Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:21:09 2011 Seq name: gi|311092479|gb|AEKJ01000001.1| Lactobacillus iners LEAF 2062A-h1 contig00034, whole genome shotgun sequence Length of sequence - 102229 bp Number of predicted genes - 94, with homology - 93 Number of transcription units - 29, operones - 18 average op.length - 4.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 8514 10180 ## HMPREF0424_1196 LPXTG-motif cell wall anchor domain protein - Prom 8654 - 8713 16.8 - Term 8694 - 8738 -0.8 2 2 Tu 1 . - CDS 8779 - 10125 1515 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 10171 - 10230 9.5 - Term 10147 - 10187 -0.7 3 3 Tu 1 . - CDS 10232 - 12628 2507 ## COG3957 Phosphoketolase - Prom 12689 - 12748 5.7 - Term 12726 - 12768 3.2 4 4 Op 1 . - CDS 12776 - 13501 780 ## COG2188 Transcriptional regulators 5 4 Op 2 . - CDS 13501 - 14433 1068 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 14460 - 14519 7.2 6 5 Op 1 . - CDS 14536 - 15231 749 ## COG0120 Ribose 5-phosphate isomerase 7 5 Op 2 . - CDS 15218 - 16156 954 ## COG0524 Sugar kinases, ribokinase family - Prom 16201 - 16260 10.7 + Prom 16178 - 16237 5.0 8 6 Op 1 9/0.000 + CDS 16310 - 16576 411 ## COG3830 ACT domain-containing protein 9 6 Op 2 . + CDS 16594 - 17937 1767 ## COG2848 Uncharacterized conserved protein + Term 17962 - 18020 8.1 - Term 18024 - 18074 8.7 10 7 Op 1 . - CDS 18085 - 19173 841 ## gi|312871969|ref|ZP_07732051.1| hypothetical protein HMPREF9218_0636 11 7 Op 2 . - CDS 19160 - 19342 106 ## gi|312871959|ref|ZP_07732041.1| hypothetical protein HMPREF9218_0637 12 7 Op 3 . - CDS 19367 - 19552 143 ## gi|259501621|ref|ZP_05744523.1| conserved hypothetical protein - Prom 19644 - 19703 7.9 - Term 19677 - 19716 6.0 13 8 Op 1 . - CDS 19731 - 20198 588 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) 14 8 Op 2 6/0.000 - CDS 20276 - 21679 1604 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 15 8 Op 3 19/0.000 - CDS 21681 - 22130 502 ## COG0822 NifU homolog involved in Fe-S cluster formation 16 8 Op 4 24/0.000 - CDS 22120 - 23358 1051 ## COG0520 Selenocysteine lyase 17 8 Op 5 41/0.000 - CDS 23324 - 24622 1433 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 18 8 Op 6 . - CDS 24635 - 25426 967 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component - Term 25446 - 25477 0.2 19 8 Op 7 21/0.000 - CDS 25487 - 26110 680 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 20 8 Op 8 . - CDS 26120 - 27172 1334 ## COG0306 Phosphate/sulphate permeases - Prom 27201 - 27260 11.5 21 9 Op 1 34/0.000 - CDS 27293 - 28033 281 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 22 9 Op 2 . - CDS 28026 - 29504 1399 ## COG0765 ABC-type amino acid transport system, permease component - Prom 29545 - 29604 8.0 23 10 Tu 1 . + CDS 29667 - 30302 687 ## COG0572 Uridine kinase + Term 30310 - 30346 3.1 24 11 Op 1 6/0.000 - CDS 30322 - 31023 646 ## COG1564 Thiamine pyrophosphokinase 25 11 Op 2 10/0.000 - CDS 31020 - 31670 494 ## COG0036 Pentose-5-phosphate-3-epimerase 26 11 Op 3 7/0.000 - CDS 31678 - 32571 739 ## COG1162 Predicted GTPases 27 11 Op 4 17/0.000 - CDS 32571 - 34424 1766 ## COG0515 Serine/threonine protein kinase - Term 34447 - 34478 -0.3 28 11 Op 5 3/0.000 - CDS 34493 - 35242 738 ## COG0631 Serine/threonine protein phosphatase 29 11 Op 6 20/0.000 - CDS 35248 - 36561 1078 ## COG0144 tRNA and rRNA cytosine-C5-methylases 30 11 Op 7 4/0.000 - CDS 36551 - 37495 1031 ## COG0223 Methionyl-tRNA formyltransferase 31 11 Op 8 3/0.000 - CDS 37518 - 39908 2266 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Term 39916 - 39952 5.0 32 11 Op 9 25/0.000 - CDS 39966 - 40184 349 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 33 11 Op 10 . - CDS 40186 - 40812 791 ## COG0194 Guanylate kinase - Prom 40863 - 40922 9.9 34 12 Op 1 . - CDS 40941 - 41231 206 ## gi|259501643|ref|ZP_05744545.1| conserved hypothetical protein 35 12 Op 2 . - CDS 41234 - 41656 639 ## COG1799 Uncharacterized protein conserved in bacteria 36 12 Op 3 35/0.000 - CDS 41679 - 42941 1497 ## COG0206 Cell division GTPase 37 12 Op 4 25/0.000 - CDS 42960 - 44327 1449 ## COG0849 Actin-like ATPase involved in cell division 38 12 Op 5 3/0.000 - CDS 44392 - 45228 699 ## COG1589 Cell division septal protein 39 12 Op 6 4/0.000 - CDS 45257 - 46369 967 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 40 12 Op 7 28/0.000 - CDS 46372 - 47754 1388 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 41 12 Op 8 4/0.000 - CDS 47768 - 48727 1010 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 42 12 Op 9 . - CDS 48736 - 50889 2512 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 43 12 Op 10 . - CDS 50886 - 51251 435 ## LBA0804 cell division protein 44 12 Op 11 29/0.000 - CDS 51279 - 52226 1081 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 45 12 Op 12 . - CDS 52229 - 52660 493 ## COG2001 Uncharacterized protein conserved in bacteria - Prom 52708 - 52767 5.0 - Term 52747 - 52803 6.5 46 13 Tu 1 . - CDS 52824 - 53159 233 ## LAC30SC_04000 hypothetical protein - Prom 53290 - 53349 8.3 - Term 53397 - 53449 13.3 47 14 Op 1 . - CDS 53451 - 53978 300 ## LJ0964 rod shape-determining protein MreD 48 14 Op 2 22/0.000 - CDS 53978 - 54826 871 ## COG1792 Cell shape-determining protein - Term 54838 - 54874 4.0 49 14 Op 3 4/0.000 - CDS 54876 - 55919 1172 ## COG1077 Actin-like ATPase involved in cell morphogenesis 50 14 Op 4 . - CDS 55970 - 56587 520 ## COG2003 DNA repair proteins 51 14 Op 5 . - CDS 56620 - 57297 732 ## COG0637 Predicted phosphatase/phosphohexomutase 52 14 Op 6 8/0.000 - CDS 57278 - 58543 1297 ## COG0285 Folylpolyglutamate synthase 53 14 Op 7 . - CDS 58543 - 61182 2820 ## COG0525 Valyl-tRNA synthetase - Prom 61248 - 61307 8.0 - Term 61193 - 61227 6.0 54 15 Op 1 7/0.000 - CDS 61474 - 62673 1232 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase 55 15 Op 2 3/0.000 - CDS 62702 - 63856 1053 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - Prom 63889 - 63948 7.8 - Term 63869 - 63897 0.7 56 15 Op 3 . - CDS 63957 - 65684 1590 ## COG4477 Negative regulator of septation ring formation - Prom 65891 - 65950 8.6 + Prom 65712 - 65771 7.5 57 16 Op 1 . + CDS 65928 - 66554 979 ## PROTEIN SUPPORTED gi|227520659|ref|ZP_03950708.1| 30S ribosomal protein S4 58 16 Op 2 . + CDS 66598 - 67935 1484 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Prom 68110 - 68169 10.1 59 17 Op 1 . + CDS 68190 - 68474 227 ## 60 17 Op 2 . + CDS 68532 - 69005 626 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 69012 - 69070 10.5 - Term 69008 - 69049 1.1 61 18 Op 1 . - CDS 69076 - 70269 906 ## COG0772 Bacterial cell division membrane protein 62 18 Op 2 . - CDS 70286 - 70513 338 ## LGAS_1233 hypothetical protein 63 18 Op 3 . - CDS 70527 - 70841 280 ## COG0759 Uncharacterized conserved protein 64 18 Op 4 . - CDS 70889 - 71878 1112 ## COG1077 Actin-like ATPase involved in cell morphogenesis 65 18 Op 5 . - CDS 71944 - 72177 290 ## LJ0942 hypothetical protein - Term 72184 - 72224 2.4 66 18 Op 6 42/0.000 - CDS 72227 - 72661 584 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 67 18 Op 7 42/0.000 - CDS 72673 - 74115 1826 ## COG0055 F0F1-type ATP synthase, beta subunit 68 18 Op 8 42/0.000 - CDS 74139 - 75092 1010 ## COG0224 F0F1-type ATP synthase, gamma subunit 69 18 Op 9 41/0.000 - CDS 75110 - 76621 1849 ## COG0056 F0F1-type ATP synthase, alpha subunit 70 18 Op 10 38/0.000 - CDS 76611 - 77180 446 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 71 18 Op 11 37/0.000 - CDS 77180 - 77680 757 ## COG0711 F0F1-type ATP synthase, subunit b 72 18 Op 12 40/0.000 - CDS 77725 - 77937 389 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 73 18 Op 13 . - CDS 77956 - 78672 494 ## COG0356 F0F1-type ATP synthase, subunit a - Prom 78705 - 78764 3.9 74 18 Op 14 . - CDS 78767 - 79396 891 ## COG0035 Uracil phosphoribosyltransferase - Prom 79424 - 79483 9.3 - Term 79465 - 79493 -0.1 75 19 Op 1 10/0.000 - CDS 79494 - 80540 1097 ## COG0009 Putative translation factor (SUA5) 76 19 Op 2 32/0.000 - CDS 80494 - 81333 329 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 77 19 Op 3 3/0.000 - CDS 81326 - 82414 1541 ## COG0216 Protein chain release factor A 78 19 Op 4 . - CDS 82447 - 83040 645 ## COG1435 Thymidine kinase - Prom 83070 - 83129 9.2 + Prom 83023 - 83082 12.8 79 20 Tu 1 . + CDS 83170 - 84522 1333 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase + Term 84530 - 84574 5.3 - Term 84289 - 84336 4.3 80 21 Tu 1 . - CDS 84525 - 85538 886 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 85757 - 85816 75.5 + TRNA 85665 - 85736 60.3 # Glu CTC 0 0 + TRNA 85741 - 85813 61.2 # Gln CTG 0 0 81 22 Op 1 9/0.000 - CDS 85877 - 87106 836 ## COG1668 ABC-type Na+ efflux pump, permease component 82 22 Op 2 . - CDS 87103 - 87996 1085 ## COG4152 ABC-type uncharacterized transport system, ATPase component - Prom 88022 - 88081 9.1 83 23 Tu 1 . - CDS 88087 - 89427 1552 ## COG0166 Glucose-6-phosphate isomerase - Prom 89490 - 89549 8.1 + Prom 89575 - 89634 8.3 84 24 Tu 1 . + CDS 89730 - 91829 1333 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Term 91799 - 91833 1.3 85 25 Op 1 . - CDS 91945 - 92658 594 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 86 25 Op 2 . - CDS 92660 - 93049 395 ## LGAS_1262 integral membrane protein 87 25 Op 3 . - CDS 93061 - 94029 843 ## COG1482 Phosphomannose isomerase 88 25 Op 4 . - CDS 94057 - 95448 958 ## gi|312871909|ref|ZP_07731991.1| hypothetical protein HMPREF9218_0715 - Prom 95485 - 95544 8.3 - Term 95493 - 95541 7.0 89 26 Op 1 36/0.000 - CDS 95580 - 97547 1408 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 90 26 Op 2 4/0.000 - CDS 97547 - 98302 274 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 98341 - 98400 11.1 91 27 Op 1 40/0.000 - CDS 98402 - 99319 526 ## COG0642 Signal transduction histidine kinase 92 27 Op 2 . - CDS 99324 - 99992 662 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 100030 - 100089 6.8 - Term 100016 - 100061 7.2 93 28 Tu 1 . - CDS 100092 - 101384 1457 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 101517 - 101576 8.4 - TRNA 101582 - 101654 81.0 # Thr CGT 0 0 - Term 101725 - 101775 8.5 94 29 Tu 1 . - CDS 101793 - 102227 212 ## gi|312871962|ref|ZP_07732044.1| conserved hypothetical protein Predicted protein(s) >gi|311092479|gb|AEKJ01000001.1| GENE 1 3 - 8514 10180 2837 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_1196 NR:ns ## KEGG: HMPREF0424_1196 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: G.vaginalis # Pathway: not_defined # 1483 2027 809 1329 3173 84 25.0 1e-13 MKLSKNNIQSKLQKEAHQIPHFSIRKLTIGAASVLLSTSLYLNWNNLNALAAENSSTKHG TYDVNKKQENPPAANESLKTTNKMVDKKLVNQKVNQTDAELKAHIATAENLNSDKITPKT NQQLDLAIATAKTAIQSYSEDAKKDTAHRLKTVVLQAKKEAAEKTKKESAKSVSVDNLKA LSDQLFDKTMHLDQTKADKGELQKIIDFGIELDSFLKNKNLKAEQLNNYETNAKRMLALV DKLPKIQINAHGKSMPQSRSYADRDGEDRDFDLKNLSLHKPLSAKEFNSDQFKLQQEKNS AIAFLQYALSWNNNPQNTVVDETAGGNKVKDEEIKENAILGINVANNREQIRQWLDYVFW HKRGMFIVPQSPDGNTTGNDVFALYKPGTFLYGTHNNAKEIPTVKEIHNTVYVKNSLIKD QTGKLVGYHWTVEFNHQHADRKSGHYYFTTPKGQSIVSSNDSKNGVKFADAAIVSTDASG HSKTLTGKGYTVDSIWQNATQNDFLPADRVSGTAQGPETYYGKQSWKTYTRNGVNLWWGG GSFSRWNYIGSAHTLKDIIYKHYWQGSNYPQSGCTKLNKDEWGDEAQFTNSRDGIKMGPF IDNLYKYKYDFNKGESSDYQRIDYAQLIQENTDRVYMFESKQDDTNTYKITFDTRIDDPK STNVHNPYYAAGYHSYENKTTVNYMQWGGLRFKPELSITINGKKNNILVDPQTHNDYVEV HEGEKTKISLNSKNDKQGLAMWSTDYKSTSALSWQLGKADENLFNADYKETPVDADNNAA NPYVHQNARMELSGVVIAKPGSEMNIAWAGSGMPNFTDDDITSIYGDKTKMDDGLNAFLP NREIRSVNVRVIPAAAYAQKTKIAIRFKGQQIVLSEQEKQDIKKTIYDANKDHYDIKNGE NGITVDNSGNVSFTIQFNAAKHKGDRANMQYRTLKLKPADTLSYTTIDIKPVDGSASFSL NSKNGVIDPTLTIYNHEPYQVKVNATDTTSKMNDFLTNGGTNVTGLSTDHNEYQKNHRGM QVDDKTPYVLTMNGQGLSKDGKTYKIKFESWDGNDTKTVSQEVKVVVADQAGRYQNKVKG RTWTVEVNDKTADHLKPDNFVDDSTKAMLGKAPSGVAGKTGVTYTFKNGVPAHDHVTKGN TPKDVTVVAKFTDNSTLEIKGKLIVNDTQNPIVEFDTTDHKIVNEGNNNYRLNVYSNEKF DVAIKAHDNSNIVQDLRVKYGNTLPNWISSDEDQVQTKYKSDTKGKRDSKGTSNNPYIIH LTGTVPNNMVNQTYKVSATAWDDVDHTGTANLEIHVLPQCDKYKNLLQGNTQTIEVKEAI PDIKTFVTAKGVKLPNNVKYTYKGTGFDNTNIKEQNAVIKLTFADNSYIEVNAKLNVQDT HLATVQFASTDAHVKISDKKYIQSTKPSDTKQSSVTITAYVNEQFGVNVNANDNSGHIQD VLLSKDNGSLAWMTSNDRDYQQHNRYKAVSESNPYQIQLTGTPTTKGTSTAVIKTWDGAN HEGDIKFTINVLDQAAQFDGDKLNGATKTVEVNDNVVLSPTDFVDAKTQALLKKAANDVK YTWTTSDGKQPANNTVSTKTNGKYQPSDIKIIAKFSDGSTKTITGHLIVQDTKAPTVKFE MTPNVTGNKITIGTETSNNQKLVTITTYRNEKFSFDVKANDNSKLVSDVKLTGTTLEGTS TDHDSKKDHGTDPYKLTISGSFTPTTQTGQYTRTIQATDKAGNSSNTSFKFYVKEQAAQF DGQTLTGQTQTVTLHTKINPNEVERYVSDATKSLLKKANGNVTYSFKDMKELSTDAVSAD GKQVHVIATFSDKSTKEIIGTLIVNDKNAPTVNFVKGTNSGPVQIDNQSKTITVYRNEKF NINANVKDDSKVVKDAKLISKDAATHTEFTITTDHDSNHNHGHDPYVLNISGSFTDKAAL GNYSRTIHAVDGNNNAGDTNFKFVVKNQSAQFDSDQLNGATKTVEVNSGYTPKAEDFIDK NTLTKIKAANGNVTLSFKQGTPKIETVKTETVPITVTFSDGSHKVINGTLKVQDTTVPSL KLIKTNSNKKNRVGEITCTPSDSKHKNSTATVVVYRNEQFSIQALATDNSNIINDARFHG SAADITDNHDVYQAQYRGKKGKVNDPYVVTIEGSFSKDLKFDPNTHTKTIDGSYVRAWDG VDNTNDLKIKFIVKDQSAQFDNDKLNGTTKVVEINSANIPQAQDFIDPATLKKLNSAKDG ITCTFVGDKAPKIDTVKINEPVNVVVTFSDKSTKTIQGHLTVKDTTAPVITVSKAEKGKC VVNGDQITVYNNEPFNLNVSAVDNSNHVSNITIEGTHEGVSLTSDHKGEGSKAKPYTSVI SGTFNDKGTHTITLDATDASHNKGTKKLTVVVKDQADQFDNQTLTGITKTVEVNDDSVSL KPEDFVSQDTKDLLGKATKGVKWTFVDNKELDKSKVTSANTGKEVHIKAEFADKTSKTIV GHLIVQDTKAPTLELVSSDPKSKDIVVTKGSDNSYNITVYRGREFKLLAKATDNSHVVTD VNIAGGDINGFSNDHDTYIKNLAKNPKGTSKDPYVLTMKGTFANDFSTGLYTRTVTAKDA SGHSTTITMKITLKSQNERFKDEFHGYKVLVPEQLDWPQIFKAENQPVPPKDFVAIPADA PDNLSYRFECDDSGNPCIYVDFADKSSLKLSLETITADAQNKNRVAETIQRNIIIRKDGQ STTSVQKVEFIRYIILKSEGISKISSIALDKDLRSASISDEYGQWLTKSKSNDNVVTYSD NAELSKYDAKNIVGYQKVETANDTLEVKPNSNDSINKYLIEKTDENDFSPAKKIPDIVIE YKRLDDVIPVGPNVQKP >gi|311092479|gb|AEKJ01000001.1| GENE 2 8779 - 10125 1515 448 aa, chain - ## HITS:1 COG:L196579 KEGG:ns NR:ns ## COG: L196579 COG0446 # Protein_GI_number: 15672373 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 1 445 1 445 446 548 63.0 1e-156 MKFVIVGTNHAGIAAANTLLDNYGKNNEVIMIDRNNNLSYLGCGTALWVGRQISSYKKLF YTKPADFEAKGARISLETTVNKIDFENKIVYATTKNHTEITEKYDKLILAEGSAPIAPDL PGKDLEGIHFLKLFQEGMAVDQELDKSDVKTVAVVGAGYIGVEIAEAARRRGKQVLLFDA AKTCLSSYYDPEFSTLMDQNLRDHDIETHYGELAQEYLGKDGHVCALKTNKGKYQADIVI NCIGFRPNAILGGDHLKRFSNGAYLVNRNFQTSDPDVFAVGDCATNYSNALQDTTYIALA SNAVRSGIVGAHNAAGTVIEGAGVQGSNGIEIYDLKLVSTGLSVKAADKFGLSVKYVDYE DKQLPDFMPASENAKVKIRIVYEKKTNRIVGAQLASLYDMHELIHMFSLAIQEGLTMDKL QLLDIFFLPHYNQPYNYVTMAALKADKN >gi|311092479|gb|AEKJ01000001.1| GENE 3 10232 - 12628 2507 798 aa, chain - ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 5 795 15 795 796 915 55.0 0 MNYDSEEYLKSVDAYWRAANYLSVGQLFLMNNPLLKQDLVATDVKPKPIGHWGTIAPQNF IYAHLNRVIKKYNLNMFYIEGSGHGGQVMVSNSYLDGSYTETYPEITQDEKGMAKLFKQF SFPGGIASHAAPETPGSIHEGGELGYCLSHGVGAILDNPDVIAAVEIGDGESETGPLATS WFSDKFINPIHDGAVIPILQINGFKISNPTIVSRMSDAELTQYFEGMGWKPYFISAYNDG QFNGYKPHMQVHHEMAHVLDQVIEEIKAIQTHARETGDSSLPTWPMIIFRVPKGWTGPKF DLDGNPIENSFRAHQIPIPVSQKQMEHKDLLTDWLKSYHPEELFEDTGYPKPIVLQNTLT GVHRMAKNPITNGGLSPKSLNLPDFRKFAVKFDQPGSVEKQDMVEWAKYLDAIAKLNPDN FRGFGPDECKSNRLFDLLDNQKRQWMEKIHQPNDENLNNSGRIIDSQLSEHQAEGWLEGY VLTGRHGFFATYEAFGRVVDSMLTQHFKWLRKAKEQAWRRYYPALNFVDTSTVFQQDHNG YTHQDPGLLTHLFEKGHADLVHEYLPADANSLLAVSDKAFKDRECINILVTSKQPRPQWF SIDEAKRLVDHGLGYIDWASTDHNAKPDVVFASTGTEPTIETLAAIDILHKEFPELKIRY INVIDVMKLMPTSKNNAAISDQEFERLFPIGVPVIFAWHGFKPMMSSIWFERGRGKDDIH IHCYEENGDITTPFDMRVLNELDRFHLVKDAVMMTNLADTNAEFIEQIDRLLDKHHVYIR DYGEDMPEVVSWKWQGLK >gi|311092479|gb|AEKJ01000001.1| GENE 4 12776 - 13501 780 241 aa, chain - ## HITS:1 COG:SP2020 KEGG:ns NR:ns ## COG: SP2020 COG2188 # Protein_GI_number: 15901841 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 236 5 236 242 129 32.0 7e-30 MADLVYRTIMHDIKEKIVNKEYDGMRLPDERSLSEHYQVSRSSMKRALELLAQEGIVFKK RGSGTFINPLYLKNRGLFKYEGSNLGITDSFSVPGKSQNIELLDYQVIKTDDDLKQDLFL TSSDFVYKIRRLRLLDDQPFLIETGFIPIKIAPDLNPDILKKSLFNYLEHQKNKRVTKSF LTITVEPSTLEDQVKLMLEPNEPVGIIEGIFFLDDGTPFEVSNMRVHYKYMKYNSFVNLN K >gi|311092479|gb|AEKJ01000001.1| GENE 5 13501 - 14433 1068 310 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 6 301 7 301 306 219 41.0 4e-57 MKRIPLIISTDPGIDDAAALTISLFAQELDVRMIVATWGNVSLKHTLDNALRLETFLKTT VPVVKGSAAPLIRDAISAADVHGVSGMVGYQFPEADLSLLKSGNAIELMHQEINKQKEKV TLVALGPLTDFALLFKQYPEDISKIDKLFIMGCNIGRGNYTPLAEYNIACDPEAAAIVFN SGLKIVVAPLEIGRQAAILPDDMSSIKAHGRVGEMLYGILTGINEESVSGGTEIYDATAI GMLLDPQMYTFSRAHVEIELTGKYTYGASVIDFSDKACTKYNAEIAVAVDHKIFTDWFLK VTQSAEMEKK >gi|311092479|gb|AEKJ01000001.1| GENE 6 14536 - 15231 749 231 aa, chain - ## HITS:1 COG:L0045 KEGG:ns NR:ns ## COG: L0045 COG0120 # Protein_GI_number: 15674215 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Lactococcus lactis # 7 224 2 218 224 189 47.0 3e-48 MQKTKQDELKQEAAKKAALMVEPNSVLGVGTGSTVAFFIDELAKINREKALNLKAIVTTS NRSRAQLEKQGFKVNELSEVDQIDLTVDGADRVDLNLNGIKGGGGALTLEKNVAVNSKKN IWIVDETKFVDRLKGFALPVEVLPISCEQNFRTFSQEGLLPKYRLDVNGKRYVTHYGNFI IDLHVDPIPFPNVLAHYLDSVVGVVEHGLFLNICNEVIIAHSDGKIEIRKR >gi|311092479|gb|AEKJ01000001.1| GENE 7 15218 - 16156 954 312 aa, chain - ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 3 295 4 296 304 239 46.0 5e-63 MKKVTIIGSINVDNIMHIKALPKPGETVAMSAFSQAAGGKGANQAIASARAGNKTVFVGR VGDDSNGEYMLREFSENEIDTAYINVTKKQQTGQAYILLQETGQNSIIIQHGANYDLTEA DIMQAKDEIQTSDFVIAQFETPLAPTILAFKLAHQAGKKTILNPAPAKANIPEELLKVTD LITPNETESEIITGIRVTDLESMKRSAEFYHQLGIGGVIITLGEKGCFVSTSKVSKLIPA FKVKAVDTTAAGDTFIGALSSELQADFANIEASAIYASLSSSFAVQKLGAFPSIPKRDIV EAALKEINYAKN >gi|311092479|gb|AEKJ01000001.1| GENE 8 16310 - 16576 411 88 aa, chain + ## HITS:1 COG:lin0537 KEGG:ns NR:ns ## COG: lin0537 COG3830 # Protein_GI_number: 16799612 # Func_class: T Signal transduction mechanisms # Function: ACT domain-containing protein # Organism: Listeria innocua # 1 88 1 89 89 60 42.0 5e-10 MNAILTVYGQDKVGIIAQTSTYLAEQKINILDVSQTIMGNNFVMMMSVQLPKGADFMVIN QGLAQIAKNLSVEINLRNNELYDAMHQI >gi|311092479|gb|AEKJ01000001.1| GENE 9 16594 - 17937 1767 447 aa, chain + ## HITS:1 COG:lin0538 KEGG:ns NR:ns ## COG: lin0538 COG2848 # Protein_GI_number: 16799613 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 447 1 451 451 610 72.0 1e-174 MEINKIFETSNMISQENLDIRTITMGISLLDCIDSDSDVACQKIYNKIMKNAQNLVKVGR EIEAEYGIPITNKRVSVTPISLIAAACKDQDYVKYAKTLDRAAQELGIDFIGGFSALVQK GYQKGDHILIKSLPQALAETKYVCASVNVGSTKSGINMDAVKEMGDIIVAGSKLNFMTNA KLVVFCNAVEDNPFMAGGFHGISEPDVVINTGVSGPGVVKAALEKIKGQSMDIVAETIKK TAFKITRMGQLVGTIAADKLNVPFGIVDLSLAPTPAVGDSVAEVLEEIGLEQVGTHGTTA CLAMLNDAVKKGGIMACSHVGGLSGAFIPVSEDAGMISAVNNHCLNIEKLEAMTAVCSVG LDMIAIPGNTPASTISAMIADEAAIGMINAKTTAVRVIPVPGKKVGDFVEFGGLLGHAPI MQVNEASSQDMIARGGTIPAPIHSFKN >gi|311092479|gb|AEKJ01000001.1| GENE 10 18085 - 19173 841 362 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312871969|ref|ZP_07732051.1| ## NR: gi|312871969|ref|ZP_07732051.1| hypothetical protein HMPREF9218_0636 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0636 [Lactobacillus iners LEAF 2062A-h1] # 1 362 1 362 362 706 100.0 0 MKYTKISIFSMLCAGALLSLADTAIGNKNISKVSAATEIANAKNIESTKSNMVISLNGTG RTVDSDKQVAVYDQPNGNVVRYLKSGTNWKIFKKYYDVDNNWYNLGGNQWVREKDLTIKL ASYVIFGMKGIANVINGDTKVAVCDKPNGNVIRYLAPGTNWKVFKCCDSVKKYGDVHAPK WYNLGGNQWVSEDYVGITTNIRGVGSIYSPKANPTSVLDKPFGKVIKDIDPNVRSWKIFK IYRCPSSMPGVQLRWYNLGGNQWVDGSYMVANITSMEEGIYDLCDYREYEDCPIIKVRCN SNAGIRVWAAPGIKPTGKCLPNGSSWKVLKIYYHNSDVWYNLGGNQWVSKKGTVYLENKF YK >gi|311092479|gb|AEKJ01000001.1| GENE 11 19160 - 19342 106 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312871959|ref|ZP_07732041.1| ## NR: gi|312871959|ref|ZP_07732041.1| hypothetical protein HMPREF9218_0637 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0637 [Lactobacillus iners LEAF 2062A-h1] # 4 60 1 57 57 90 100.0 5e-17 MCDMNPEIRTIISGFLLCLKFEVYITLKKYNISIVSSKKRNYNFRQKIDYYSEVIRYEVY >gi|311092479|gb|AEKJ01000001.1| GENE 12 19367 - 19552 143 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501621|ref|ZP_05744523.1| ## NR: gi|259501621|ref|ZP_05744523.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_04112 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 61 1 61 61 76 95.0 7e-13 MSKVIVKSALIVVIVLVAYFISFNSGFRFLDQYPYIKAILIFLAFVLTLHNVIRDVRNNK K >gi|311092479|gb|AEKJ01000001.1| GENE 13 19731 - 20198 588 155 aa, chain - ## HITS:1 COG:SP1572 KEGG:ns NR:ns ## COG: SP1572 COG0783 # Protein_GI_number: 15901415 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pneumoniae TIGR4 # 5 151 31 176 178 132 46.0 2e-31 MKYPKTKEILNEAVADLIKLHLVVHQHHWYMRGERFLKLHPYLDEVMDELSEQLDLAAER IVILDGNPCSSLKEVLEKSKIKESEGDYNLTINERFSIIVDDLRQLRDLYQKGIRISAEE GDDSTNDMLILFNTSVEKRIWMMSAELDQAPKNDD >gi|311092479|gb|AEKJ01000001.1| GENE 14 20276 - 21679 1604 467 aa, chain - ## HITS:1 COG:SP0871 KEGG:ns NR:ns ## COG: SP0871 COG0719 # Protein_GI_number: 15900754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 13 467 16 470 470 691 71.0 0 MATAEDLVNDDAYQFGFHDNIKPKFSTGRGLTEEIVRKISAEKNEPKWMLDYRLQAYQIY QKMPFPSIGPDLSGLDLENMLYYQKVTDKKYRDWNDVPEDIKLTFEKLGVPQAERKYLAG SAAQYESEMVYHNMKKQFDKLGIIFMDTDSALKEYPDIFKKYFGKIAHPTDNKFAALNCA VWSGGSFIYVPKGVKVNTPIQAYFRLNAENSGQFERTLIIVDQDAHLDYVEGCTAPQYSS DSLHAAVVEVNVLEGAYCRYTTIQNWSDNVYSLETKKAQAQKNATMEWVDGNLGAKVTMK YPSVYLNGEGAKGTMLSIAVAHHGVHQDSGARMLHNAPNTSSSIVSKSIARGGGSTDYRG TVDFSKNSSGSKSHVECDTIIMDDMSSSDTIPTNAIENSNVAMEHEATVSKISEEQLYYL MSRGISERKATEMIIMGFVEPFTQQLPMEYAVELNRLISFQMEGAIG >gi|311092479|gb|AEKJ01000001.1| GENE 15 21681 - 22130 502 149 aa, chain - ## HITS:1 COG:BH3468 KEGG:ns NR:ns ## COG: BH3468 COG0822 # Protein_GI_number: 15616030 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Bacillus halodurans # 1 142 1 141 146 131 44.0 4e-31 MGIERLNQLYREVILDYGQHPRNKRKIEHPTLTTDVYNPNCGDKLKLFVCLENDKIVDAS FTGEGCTLSQASADMMTKVIKGKSVEQAISLSRTISAIALGKKQSESQMKALGDAKVLES VMQFPARIKCVTIAWWGLDRILLGLRKEA >gi|311092479|gb|AEKJ01000001.1| GENE 16 22120 - 23358 1051 412 aa, chain - ## HITS:1 COG:BS_yurW KEGG:ns NR:ns ## COG: BS_yurW COG0520 # Protein_GI_number: 16080321 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Bacillus subtilis # 4 410 1 404 406 460 54.0 1e-129 MDKINIEKIRNDFPILKKKINDEKLIYLDNAATLQMPKDVLTACDNFYHDAYSNVHRSSH TLAIKATQIYETVRKKVQKFINAADTSEIIFTSGCTASLNLVALSWGESFISAGDEIVIT AMEHHSNLIPWQQLALRKKAKLKFIELTPDGILDMNDAVQKITSKTKLVAAVHVSNVLGV INPIKKLASLAHKVGAIMVVDGAQAAGHIPIDVQQLEADFYAFSGHKMLAPTGVGVLYGR KYLLEKMTPVMYGGEMIEHVSRFTSSWAEIPFKFEAGTPNIAGVRGLGAAIDYLNKISFK MITEYEQELTDYALNALKKITALTIYGPLTSKERLPIFSFNLDKIHAHDLATILDAEGVE VRAGHHCAEPLMTDLGVIATVRASLYIYNTEKDIDILVEAIEKARNFFNHGN >gi|311092479|gb|AEKJ01000001.1| GENE 17 23324 - 24622 1433 432 aa, chain - ## HITS:1 COG:SPy0287 KEGG:ns NR:ns ## COG: SPy0287 COG0719 # Protein_GI_number: 15674461 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 16 422 13 419 420 348 42.0 1e-95 MDDQQASRLRQVAYNHQEPAWFIEKRLAAQKLLLNNIDLPKMQRFKFDNWPFFSKHDIDL QIAESIEKNAVTTNEFNVLQIGQTTCSLNLPKKYQEQGVIFTDIFTALKKYPEMIKKYFM TEVIKMDEDRITAYHQAFVNAGLFLYVPKNVEINIPIKADLVQDSKSETSFNPHLLIVAG QNSKLKFVQHLKTIGSCHNTMNMAVEIWAEDGSHVEFSSLEEIGKNTTLYFNKRANIMRD AYVEWAVGLMNDCNTVGNIDSELIGDGSYAYSKAIAVTTDKQHVGINNRVINRGPHSTGL INQRGVLLDNSRLIFNGIGQIKHGAHGSKADQQNRVLMMSDNAHGDANPLLLIDENDVIA AHAASVGPVDPIQMNYLMSRGIPFDQAERLVIRGFLGAVLDAIPAVDVRHEMINILERKL INGQNKYRKDQK >gi|311092479|gb|AEKJ01000001.1| GENE 18 24635 - 25426 967 263 aa, chain - ## HITS:1 COG:L34806 KEGG:ns NR:ns ## COG: L34806 COG0396 # Protein_GI_number: 15673775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Lactococcus lactis # 1 258 1 253 256 363 69.0 1e-100 MATLEIKDLHVEVQDKEKKFKKILKGVNMVMHTGEIHAIMGPNGTGKSTLSETIMGNPKY HITQGDILLNGESILNMTVDERARKGLFLAMQYPAEVPGVTNSEFLRAAINARRPENDPI PISDFLSELDKNLALLDMKENMIDRYLNEGFSGGEKKRNEILQLLMIKPSFAILDEIDSG LDIDALRVVSRGVNAMRGNQFGALMITHYQRLLDYIVPDIIHVMMDGRVVKDGGPEMAKK LEKEGYAGLRDELGLDIKLVDED >gi|311092479|gb|AEKJ01000001.1| GENE 19 25487 - 26110 680 207 aa, chain - ## HITS:1 COG:CAC3094 KEGG:ns NR:ns ## COG: CAC3094 COG1392 # Protein_GI_number: 15896345 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Clostridium acetobutylicum # 5 207 7 210 210 112 31.0 5e-25 MARVKDSYYFETFVECADYSLQAAKLLKEIMTDYDSTMIGENTKKIHFIEHQGDQVKHNL TKVLARAFITPFDREDIAELSQKIDTMTDSIESVGMRLYTNNIKKIRPDALPVISLLINA VEDVKTLLKEMPNFKRNTAFKDLIIRVNSVEEEADKLFIENMHRLSVEESDPMNVLMWRD IYNALERSVDACEYVADTVEMVVLKNS >gi|311092479|gb|AEKJ01000001.1| GENE 20 26120 - 27172 1334 350 aa, chain - ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 30 350 20 335 335 185 35.0 1e-46 MTISFSNFLGQVITNPGLAITVFLTLGVIFVNGWTDAPNAIATTVTTRTMRPKTAIVMSA IFNFFGVLIMTQINSSVASTISNMVDFGSDSRHAMIALSAALFSIVVYSVGASYFGIPTS ESHSLIAGLTGAAIAMQNGLKGVNGTEWIKVIYGLFLSLFLGFVLGWLVCKLVILICRNF ERKRTNKYISYAQILGSAAMSFMHGAQDGQKFIGVLLLGIAFANGHSDLVNTFIPIWLMM ICSTVMGVGTSVGGEKIIKAVGMDMVKLEKYQGFASDLAGALCILISTLTGVPISTTHTK TSAIMGVGAVRRLSSINLSVVKDMMLTWVFTFPGCGIISYIMAKIFMAFF >gi|311092479|gb|AEKJ01000001.1| GENE 21 27293 - 28033 281 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 230 1 226 311 112 30 6e-24 MTDLIKINDLKKHYGKQSILKGISATVEQGKVISIIGPSGAGKSTFLRCLNGLEKPDDGS ICFEEKNITSINERELDKLRQKMGMVFQNFNLFSNMNVLENIKLAPMKVNKISNEAANQK ALSLLERVGLEDCANKMPSALSGGQKQRVAIARALAMDPDVMLFDEPTSALDPEMVGEVL NVMKELADSGMTMLIVTHEMGFAQHVSDEIWFMADGFLQEKATPEEFFAQPKTKRAQEFL SKVLSV >gi|311092479|gb|AEKJ01000001.1| GENE 22 28026 - 29504 1399 492 aa, chain - ## HITS:1 COG:lin2352_2 KEGG:ns NR:ns ## COG: lin2352_2 COG0765 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 284 492 7 215 215 219 50.0 8e-57 MKKCNLFKIIANLACLMTFLCLFSANAVAADHSSKSILTCIKNKKELVVGTSADYPPLEF IDNQNGTNKYVGVDIELAKEIAKDLGVKLVVKNMSFDSLLVALETRKVDMVISGLTPTPE RKKSVDFSKIYYRPSGEYFLINKNDRAKYHSLISFKGQKIGAQNGSLQYQLVKKQMPKSH VKGLGKINTLVLALQSGKVSAVVMEELIAKAYAHNNPSLYCFKSDLKEPQAGNAIAVAKN QPDLLKEVNKTVDKVIAKKLVLTKFLPQAAKSMKKSTAKKDPFKYAPYFIKGIELTLVIT IFSVLIGVILGTILALMRLSSHLALKIPAICYIELIRGTPQMVQILFVYFGIGAIIQNMS ALLAGIIAIGLNSGAYVAEDIRSGINSLPVGQAEAARSLGLSKAATYRYVVIPQAIKNIW PALGNEFITLLKDSSLVSIIGVAETMYQTQLVQTSTYQGVFPLVVAMAIYFIMTFTLTRI LSYMERRMNYHD >gi|311092479|gb|AEKJ01000001.1| GENE 23 29667 - 30302 687 211 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 5 210 3 205 211 243 60.0 1e-64 METQKKPIIIGIAGGSGSGKTTIAMEIYNRFKRKHNDRILKITQDSYYKCNDNLSMTERS KINYDHPDAFDMKLLAHQLNSLINHHAIEMPIYDFTQHTRSKETTHVEPADIILLEGILT LFDKQLRNLMDIKIYVDTDDDIRFIRRLKRDTQERGRSVDSVISQYLATVKPMYHQFIEP TKRYADIIIPEGGENNVAIDMLTTKINAVLS >gi|311092479|gb|AEKJ01000001.1| GENE 24 30322 - 31023 646 233 aa, chain - ## HITS:1 COG:SPy0265 KEGG:ns NR:ns ## COG: SPy0265 COG1564 # Protein_GI_number: 15674445 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Streptococcus pyogenes M1 GAS # 28 221 17 208 210 115 39.0 9e-26 MKKAVALLGGPVQLWPTDLKDRILVAKKNNDLIFASDRGSQFLLDMGIVPEVAIGDFDSL KKGELAQLEEYEIDFRYSHPEKDYTDSEQLFKVAFEEYNVDQLDIYGATGGRLDHFLLNI FTFSKSELKKYCEKIRYIDCQNIIMYILPGVKKFQAVAGYNYFAVGNLTAVDDLNISGAK YELKNYFSANPFVFSSNEFVGLQPIVVSLQSGEGIIIYSKDINRFYTAKKPRN >gi|311092479|gb|AEKJ01000001.1| GENE 25 31020 - 31670 494 216 aa, chain - ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 2 215 4 216 218 167 40.0 1e-41 MIAPSILNADNLSLKEQILEVKLAGIKRLHIDIMDGHFVPNLSYGPELIKCITRDFPDME IEIHLMSNNLPVMLPLFANLSCAVLEFHLEATDQIDKWIEYVRNKGIKVALAINPDTPVE KIVPFLDKIDQVLLMSVQPGFGGQKFRNEVIDKIVFLKKMMANHGYVIPLEIDGGINDVT ANKVKVAGADIVVAGSYIFKHGMIKDQIDKLKCVMK >gi|311092479|gb|AEKJ01000001.1| GENE 26 31678 - 32571 739 297 aa, chain - ## HITS:1 COG:BH2503 KEGG:ns NR:ns ## COG: BH2503 COG1162 # Protein_GI_number: 15615066 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Bacillus halodurans # 7 287 4 286 294 232 42.0 7e-61 MLEKIAGIVVSVISGYYDIKTDKGIIRSRARGVFRNLKQKPLVGDRVVVQPDDKGINYLV AVADRTCELQRPALANAEYVLLVMSATQPDFSVDLLDRYLVFFAWKKVKVVIFLSKTDLI SSDELLKIKSKLNEYQKIGYQYFVDYQDLEQYLQNNIDSDEIWVLAGQSGVGKSTLLNRL KKDISQKTAEISFALNRGKHTTRQISLFEYGKGYIADTPGFSSIDLSNIKLDELKDLFYE IKHFSKECKFRQCQHINEPKCAVKVALNNHDILDSRYNSYIKIREEIALGRIPEYRK >gi|311092479|gb|AEKJ01000001.1| GENE 27 32571 - 34424 1766 617 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 1 277 22 298 342 318 56.0 2e-86 MANVYLAEDIILCKKVAVKLLRLDLQKDPQTIHRFKLEAQSTSELSHPNIVSILDVGSDD QRHYLVMEYVEGIDLEEYIQRNKPLSLNEAIRIMDQVLSAIICAHQHGVIHRDLKPQNIL MDKMGNIKIVDFGIAVALNKSTMTQTNTAIGSVHYMSPEQARGSITTKQSDIYSLGIILY ELIMGQVPFGGENAVAVALKHFQEPTPSMRQQNIEIPQPLENVVMRATAKDARDRYKSVV EMKKDLDTSLEPSRRFEPPFVAEHNPNKDATIVLPVVDGSVKNTAEIKKNLKDSNKNSAW LSNFKKHKWWWITTAFAFMMIILIFIFALGRKDYVKVPELNNLDEMQAKRVLISRGLRVG KIYHKFSSKIKNNHVINVTPKSGTSIKKYQKVNLIISKGDGLTAVPNVIYEYFEDAQEEL QDLGFKVIKKEIHSSTVEKGVVVEQNLFPGKKVVADKTKIVLTVSKGGKTHKKIKLRDLT GYSLKSLKDYIKDKGLILKVIEEDSSAPQGTVIRQDPEAGTKLSRGDCVTVVVSRDNGNI LIKKYDIRYDSSSDRGNGNHIQVFISDDSHKFSNTYVDTYITTDKTISVPLDFSSSDEAR VRIVQDGKIIVDEDVRK >gi|311092479|gb|AEKJ01000001.1| GENE 28 34493 - 35242 738 249 aa, chain - ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 8 241 7 238 246 190 44.0 2e-48 MVEATYFTSVGKVRKTNQDFVKTFKNRNGIIMGVVCDGIGGHQGGDVASNMAVNHLGHNF MMTDFCEAQVAQSWLSVQLKAENDNILRTATKFADLNGMGTTIVLAIIFADQALIAHLGD SRAYLYRDRQLTQLTEDHSLVNELLKMGQITEQEAKNHPQKNIITQTLGVSSTVDPEFSI LEVHTSDIFLLCTDGLTNSLTDEQIQTILVPDGHSLKEKCKKLIDEANRLGGGDNITVCL LDCSEKEGQ >gi|311092479|gb|AEKJ01000001.1| GENE 29 35248 - 36561 1078 437 aa, chain - ## HITS:1 COG:SP1734 KEGG:ns NR:ns ## COG: SP1734 COG0144 # Protein_GI_number: 15901566 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 5 435 7 434 437 337 45.0 2e-92 MKINARSVALDTLLKIFKQKSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQYKLYLEY QLKSLVKTKLKEDYLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGSQSYRLVN GILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKAKTISILQAGNMPSVNS IRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLV VDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLTRLHQDQK LIMKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHLSEIQYNI LDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHPDFSLAPFEVGNLSKCKMIKIFP DDYNSDGFFIAKFVKRG >gi|311092479|gb|AEKJ01000001.1| GENE 30 36551 - 37495 1031 314 aa, chain - ## HITS:1 COG:L0362 KEGG:ns NR:ns ## COG: L0362 COG0223 # Protein_GI_number: 15673875 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Lactococcus lactis # 2 310 4 316 319 277 47.0 2e-74 MTSVIFLGTPKFGAVVLQGLIDQGYKIDAVVTQPDKKFGRKQELHQSEVKKVALANNLKI YQPLHLSKSEEMNELLSIRPDFIVTAAYGQFLPTKFLQTAKIKAINVHGSLLPKYRGGAP IQYSLINGDKQTGVTIIEMVKKMDAGEMYGSRVIDISDDDTSGSLFEKLSIIGRDLLLEV IPKIIANQIVPTGQDEDKVVFSPNISKDQEQIKTSMTATQAHNLVRALNPQPGAYILMHN KRYKIWQSEVSAEKCSLESGYLVSKNKEFAISFRNGTILKILNIQPTGKKPIAIKDFING QGNQFKVGEKIVED >gi|311092479|gb|AEKJ01000001.1| GENE 31 37518 - 39908 2266 796 aa, chain - ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 3 796 5 797 797 715 46.0 0 MFAEVIVDVAAKQTDKTFEYKIPSELKNVAVGSRVVVPFGRRKVQGFVVDIHAEANYQGE LKELSLVLDDQIPLIPELVKLSEVLARKLFTYRISILQAMLPSMLKAGYKKNIVPLTDSA RALPIFNGKAIDAATVRSNTDILLINKLLATKAAKIDYVVKNKASHKKDLIYSISNPKKD YLEILSNLRTNAFKQKILLNDIIENYESYPKRQQELANLGIKSDVLRNAVNNNWLQKQEV DIYRDPTAADMIHASKVVQLNAEQQAALDQINQQIVRKNAKTFLLEGITGSGKTEVYLHA IAECLKNNKSALMLVPEIALTPQMVNQVKSRFGKDVAVLHSALSEGEKYDEWCRIRNQET HVVVGARSAIFAPLTNIGLIIIDEEHEASYKQDNTPRYHARDVAILRSEYNHCPLVLGSA TPSLYSRARAQKGVYQLLRLNNRANNKELPKVQIIDLKKAMFAGTQFDISVDMLNVIKKT IAKKEQVILLLNRRGFSNFMLCRECGYVLQCPNCDISLNYHKDINQMKCHYCGYEINKPY VCPKCHSKHIIFLGSGTQKIQEELINMIPNVRILRMDIDTTRKKGSYQKILSAFGQGQAD ILLGTQMIAKGLDFPNVTLVCVVNADIGLAVSNYNASEKTFDLLTQVAGRAGRADKEGLV LIQTYNPDHYAIKLASVQDYEQFYQSEMRYRYIGNYPPFYFTTLVSIVSHNEPLAAKQAF LVKRLLTKKLSQATIVLGPTPSAIGKINNQYFYQILVKYKKEPYLAETLSYIQNYAQDIA KNDINVYIDQEPENIM >gi|311092479|gb|AEKJ01000001.1| GENE 32 39966 - 40184 349 72 aa, chain - ## HITS:1 COG:SP1737 KEGG:ns NR:ns ## COG: SP1737 COG1758 # Protein_GI_number: 15901569 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pneumoniae TIGR4 # 6 70 4 67 103 60 55.0 1e-09 MKITYPSIDKLLDRVNSRYSLSVLAAKRSHELQSGEPGALLSYKSSKALGQALEEIAAGK VTIDPEHQTKID >gi|311092479|gb|AEKJ01000001.1| GENE 33 40186 - 40812 791 208 aa, chain - ## HITS:1 COG:SPy1632 KEGG:ns NR:ns ## COG: SPy1632 COG0194 # Protein_GI_number: 15675507 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pyogenes M1 GAS # 5 206 1 202 211 235 58.0 5e-62 MGVNMSNKGLLIVLSGPSGVGKGTVKTEMVRQQAFPFEYSVSMTTRKPRQGEVDGKDYFF VNEERFKNAVANKELLEYNQYVGNYYGTPLAPVKEMLNMGKDVLLEIDVNGAKQVRSLMP DGVFIFLTPPDLHELKHRIVNRGTDSDKAIDLRMQQARQEILMMQDYDYAVVNDTVANAV DHIKAIVESEHVRIARVIDDYRNMVKED >gi|311092479|gb|AEKJ01000001.1| GENE 34 40941 - 41231 206 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501643|ref|ZP_05744545.1| ## NR: gi|259501643|ref|ZP_05744545.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] Cell division membrane protein [Lactobacillus iners AB-1] YGGT family protein [Lactobacillus iners SPIN 2503V10-D] YGGT family protein [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] YGGT family protein [Lactobacillus iners SPIN 2503V10-D] YGGT family protein [Lactobacillus iners SPIN 1401G] # 1 96 1 96 96 108 100.0 9e-23 MLRYLFFYFLLIVHYIAYIYGLLIVVDALFSWVDFLYRSVVGKLINRIVNPYIALFRIKP IMKISYSFGIDLSPLIGILLLWIIQNITFRLMVQIL >gi|311092479|gb|AEKJ01000001.1| GENE 35 41234 - 41656 639 140 aa, chain - ## HITS:1 COG:BS_ylmF KEGG:ns NR:ns ## COG: BS_ylmF COG1799 # Protein_GI_number: 16078603 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 24 139 32 146 149 93 43.0 9e-20 MAFEKLTKMLGISDEDEYEDDSFEESEVSYQEDKRNDKKSNIVSINSVNAGKSRIVLFEP RVYSDAKEVSQNLLNNRAVIINFSRMDEGQSKRIVDFVMGTVYALNGDIQRVGEKIFLAT PPKFVTDGKIADATSEKDNL >gi|311092479|gb|AEKJ01000001.1| GENE 36 41679 - 42941 1497 420 aa, chain - ## HITS:1 COG:BH2558 KEGG:ns NR:ns ## COG: BH2558 COG0206 # Protein_GI_number: 15615121 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Bacillus halodurans # 1 334 2 333 382 360 65.0 3e-99 MDFNFDSDNKSAVIKVIGVGGAGGNAVNRMIDEGVQGVSFIAANTDVQALNSNKAENKIQ LGPKLTRGLGAGSHPEVGQKAAEESQQTIEEALKGADMIFITAGMGGGTGTGAAPVIAKI ARETGALTVGVVTRPFTFEGPKRSKDAAEGISQLKQYVDTLVIIANNRLLEMVDKKTPMM DAFKEADNVLRQGVQGISDLITSTDYVNLDFADVKTVMENQGSALMGIGRASGENRTVEA TKMAISSPLLEVSIDGAKQVLLNITGGPDLTLFEAQDASDIVSKTAGDDVNIIFGTSINA NMGDEVVVTVIATGIDNKQDNHQNVTKAKLNKESVESSTANKAVTPADTQKDGNVAKPDM LFDPTSIWKQDKTSSNRVQEKVKGDSWTPFSKSEQQDVLDVETNLDDENDIPFFKHRQNN >gi|311092479|gb|AEKJ01000001.1| GENE 37 42960 - 44327 1449 455 aa, chain - ## HITS:1 COG:SP1667 KEGG:ns NR:ns ## COG: SP1667 COG0849 # Protein_GI_number: 15901502 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Streptococcus pneumoniae TIGR4 # 1 387 1 386 457 275 38.0 2e-73 METKDLLVGLDIGTTSVKAVLASSETGKLRVIGTCCEATKGMRHGKIVDIEQTANSIKKV LNGLSQKTNTTCDYLITAVPANMLQLESAHGLINVGEQGKEVDENDVRRVVSVAIKSSIK DTRQALTFLPSKFLIDGRTDVDDPRKMIAHSLEVHGVLVTAPISDLHNISRAIERAGYNN KFFVPTPLGIANVALDEGERTFGSIILDMGGGITTATVIHENKIKYATIDLEGGSDVTKD ISVVLNTSLDEAEKIKRDFGYADPELTSKEDKFPVNVVGANAPKMIDEEYLSEIISARLH QILDRVGKGLKEHAAFNLPGGIVITGGNSEIQGTDDLVKNSYNIKVKMYQSGQPGLKNAI YAVALGVITYAYNLSDINYLANSVIYGSQHTDDVKDIISKSKSVFFKKQRSEDENNRELE YNDNIQQGSHEDDANNGKVKKERKSFIDFIKKFFD >gi|311092479|gb|AEKJ01000001.1| GENE 38 44392 - 45228 699 278 aa, chain - ## HITS:1 COG:BS_divIB KEGG:ns NR:ns ## COG: BS_divIB COG1589 # Protein_GI_number: 16078588 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Bacillus subtilis # 32 271 17 255 263 59 23.0 7e-09 MSNSKLTKKDPKEQIAKWTEYKKTKIKENIDLPRLGALRRHALWTKLGSIIILSVVGIII CLYFISFKSSVRSVKLVGADEIDGARVAKIIDVSPKTKVFFSLFKGKEYSNKISRVFPEV DTVKVTITNWNNLILHIKEKRVIGYVKEKNHYRKILFNGKVSRQDISEKLVDISKPLFLG YSRQKFIINDLKVYKALPPYFRDKIKMISGKIRRPNQIILLLNDHNIIIGDVNTFAEKIK YYDSIKKQLTQPSIIDMEVGVFSRPLTVKDKEQYEINF >gi|311092479|gb|AEKJ01000001.1| GENE 39 45257 - 46369 967 370 aa, chain - ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 359 1 354 363 339 48.0 5e-93 MRIIFSGGGTGGHIYPILALIERLKERKLTTDDEILFIGTDKGLESKIVPAAKIPFKTLA VQGFNRKHLLRNFKTIKLFLNATKDARKILEEFKPDVVVGTGGYVCGAIVYAAAKMKIPT LIHESNSVVGLANKFLAHYVDKVCYTFDDVVRQFPEKKKLVKTGNPRSQQVLSLNETKID LKKKWNLNPDVFTVLIFGGSRGALAINNIMERSIDELGDKPYQIIWATGQVYYGQIKERL AKHKIAKNIVIVPYIDNMPGLLPQMTCVVSRSGATSLAEFTALGVPAVLIPSPNVTHNHQ EKNAMDLEKAGAALVINENDLNPNNFVSSIDHILLDPNCAQKMSAESKKLCCCDASDKLI YEMQNLINKK >gi|311092479|gb|AEKJ01000001.1| GENE 40 46372 - 47754 1388 460 aa, chain - ## HITS:1 COG:BH2567 KEGG:ns NR:ns ## COG: BH2567 COG0771 # Protein_GI_number: 15615130 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus halodurans # 1 458 1 449 450 379 45.0 1e-105 MKIIDKYQDKNILILGLGKSGYSVAKLLLKLGAKLTLNDKKKLDDNAQAIELASLGVKII SGYHPTDIFAKEHFDYLVKNPGIPYENPLVQAAKAANVSIITEPEVALAVSSAPYVCVTG SNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMG VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQKNILEQEL SLTKAHVVTFSEESNQADYYIGEQYLESQADHEIMKISDIKIPGRHNQQNSLVAIAISKL MGASDEDIRSVLSTFTGAKHRLQYVMTYNNRRIYNDSKSTNIEAASVAIPSFSQPEVLIA GGLDRGFTFDELVPLLKKHVKAIVLYGETKYLLADAARKAGIRDIVIVNTLQEAVPRAYD LTNDGDVLLFSPACASWDQFNTFEDRGDFFVKFVKELKTK >gi|311092479|gb|AEKJ01000001.1| GENE 41 47768 - 48727 1010 319 aa, chain - ## HITS:1 COG:lin2143 KEGG:ns NR:ns ## COG: lin2143 COG0472 # Protein_GI_number: 16801209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 10 313 12 317 324 265 48.0 1e-70 MQYGLYPGVISLVITALVLPFFICFMKMKKEGQQIREEGPKWHAKKAGTPTMGGIVFLLS SIIATVAILLSNGKLNKIAIILIIAYLGYGLIGFLDDGLKLLFHRNLGLRAWQKLLGQIV IALVILLIAYSDNFTFKIYIPLFGIVNSYLLFVFFIIIWLVGYSNAVNLSDGLDGLATGL SIISYGTYAYLAYLAHNIAVLAFCCSVIGGLIAFLIFNHKPAKIFMGDVGSLALGGGLAA VSIFLNRPWSLLIIGIVYVLETLSVILQVISFQTTGKRIFKMTPIHHHFEMLGWSEWKVD IVFWLVGLLGSIIYLLLAL >gi|311092479|gb|AEKJ01000001.1| GENE 42 48736 - 50889 2512 717 aa, chain - ## HITS:1 COG:lin2145 KEGG:ns NR:ns ## COG: lin2145 COG0768 # Protein_GI_number: 16801211 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 24 716 14 713 752 456 38.0 1e-128 MMNNKKIVRKVSKSHVNRNVVGRLLQISMAFVFLLFVGRFLYLSISKTIAGENISERVSN LYKRDEILKSVRGAIYDNSGNVIAEDSHSFTLYAILDKSSLDYKGKPMYVVDKKKTAEKL STVIPLSEKKILKYLHPKHKAYQVEFGTAGSGISLATKKKIMAMHLPGIHFDETPSRLYP NGRFASHIIGIAQPFNDKKNHSINLIGTMGIEKYFNKVLSGKDGRRIALVDAGEYQLPGG QHSYKAPINGNNIYLTIDSQLQIYLENLLDAVQNKYKPKALTAIVEDVKTGKIRAASQRP TFDPATRKGLNDNWRNILVQDSYEPGSVFKILSITAAIQEGKYNPKEYYRSGSITFNGST IHDWNYTGWGAIPFEQAFPRSSNIGMSILVNRLGRHTWRRYLDNYHIGKKTNITLPDENS GLINIHSQIDQAVTSFGQGINVNAMQMMQVYSALANSGQMLKPQLVEKIVSSSGKVIKRY KKIKVGKPVYSQETAQTTLKLMRDVVEKEYGTGMTYKIPGKSIAVKTGTAQIAGIHGGYL KGDRNYFFSVVGLTPADNPRYCIYITMKQPQIMSDPPETIMSLIFKPLINRVSVSSKVDM MSEQITIPSVKGQSREQAVRLLEKMGLYVETIGSGHKVEAQSILANTKVNPNSKIIIFTG GIIRCPNMKGWTIEQVTQFANISKVKVEVLGKGKVYKQSSIPRSILNRNSKVKVELR >gi|311092479|gb|AEKJ01000001.1| GENE 43 50886 - 51251 435 121 aa, chain - ## HITS:1 COG:no KEGG:LBA0804 NR:ns ## KEGG: LBA0804 # Name: ftsL # Def: cell division protein # Organism: L.acidophilus # Pathway: not_defined # 1 121 1 120 120 92 47.0 3e-18 MVDSSARNFRYSELDADNQRNKQVIVRLTSQNEPLSLTEVLFIAFGVVMTLIMMCFMISS NISATNAQRNLSEIQKDIATVQNKNTNLRQEIGELTSANRMNKLAKQYGLQLIESNIRNI R >gi|311092479|gb|AEKJ01000001.1| GENE 44 51279 - 52226 1081 315 aa, chain - ## HITS:1 COG:SA1022 KEGG:ns NR:ns ## COG: SA1022 COG0275 # Protein_GI_number: 15926762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Staphylococcus aureus N315 # 3 315 2 310 311 348 58.0 8e-96 MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG GRICVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEE NNRSHSAKLRVAEKL >gi|311092479|gb|AEKJ01000001.1| GENE 45 52229 - 52660 493 143 aa, chain - ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 138 1 138 143 179 55.0 1e-45 MFMGEYHHNLDSKGRLIIPAKFRDQIGDEIIFTRGMEGCIFGYPQSEWQKIEAKLAKLPL TQRSARKFTRLFYSGAMETEFDKQGRVNLTATLKEHADLIKECVIVGVSNRIEIWSEDRW QKFADEADDNYDDIAEDLDDIEL >gi|311092479|gb|AEKJ01000001.1| GENE 46 52824 - 53159 233 111 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_04000 NR:ns ## KEGG: LAC30SC_04000 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 5 109 4 108 109 75 46.0 9e-13 MFVLIFLLPFIGLLCGILVKNLLPHKKISYVELMPPFLIAACQLITSFHKLPSFLPYAFL FYLILVITVAINFVKKNKNIALGRILFSLWRYLILCSFIWYICLLFITIFL >gi|311092479|gb|AEKJ01000001.1| GENE 47 53451 - 53978 300 175 aa, chain - ## HITS:1 COG:no KEGG:LJ0964 NR:ns ## KEGG: LJ0964 # Name: not_defined # Def: rod shape-determining protein MreD # Organism: L.johnsonii # Pathway: not_defined # 1 175 1 177 177 134 47.0 1e-30 MVQLKRWYIAIALFFTMVLDGVLSQTFTRFFGNMNVACWLSIILITLISLSDAHNMANVW LCLVVGLVYDIYYVGVIGIYIVAFPLLCYCVQKIAKYIPELFITRLLVCLLGYIGVYLYL LLVLNIIGIIDISLFAIMRQLVESLVMCGILYILSYNLLLKLIVKYPFLNKQIFY >gi|311092479|gb|AEKJ01000001.1| GENE 48 53978 - 54826 871 282 aa, chain - ## HITS:1 COG:lin1582 KEGG:ns NR:ns ## COG: lin1582 COG1792 # Protein_GI_number: 16800650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Listeria innocua # 1 278 1 275 295 157 35.0 2e-38 MKKFFKNKKNVFIFLIVVLILSVLTFSTKMRNSREQPPFLQRISNDAMSIVTKVVTYPFN VICDCSNSVVDLFNTQQENDHLKRKIDELGQVKARNTSLENENLALKRTLKLKDTLSDYD LVICNVISRSPDSWTNLLIIDHGARSGIKKNMAVMSDSGLIGRVVEVNSTSSKVELITST DKAANRFAVAAKSKKHKEIHGIITLINDKLAFTPIESKVKVKPGTQVYTSGMGGKSPKGL LVGTIYKISRDSYGLSNILEIKPAGNLNNPSIVTVVKRKVAD >gi|311092479|gb|AEKJ01000001.1| GENE 49 54876 - 55919 1172 347 aa, chain - ## HITS:1 COG:lin1583 KEGG:ns NR:ns ## COG: lin1583 COG1077 # Protein_GI_number: 16800651 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Listeria innocua # 16 346 1 333 337 408 67.0 1e-113 MLNSLNIRRIKERFNVFGLGSKNIGIDLGTANTLVYIEGKGIVLREPSVVAKNTQTGEII SVGSDAKEMIGRTPGSIKAIRPMKDGVIADYDTTAAMLKYFIEKTVGNSKPSAMICVPSG VTEVEKRAVIDAARVAGAREAYVIEEPFAAAIGAGLPVMDPTGSMVVDIGGGTTDVATIS LGGIVSSRSTRMAGDKFNAAIAAYIHQNFNLLIGERTAEAIKIQIGSASVEKAKDIESMS IRGRDLITGLPKSMDIDAVDVAKAIQEVVQSIIAAIKETLEETSPEIAADVIDHGIVLTG GGALLKNLQEVISEATKVPVFIAQDPLDCVAIGTGESLKNIEVMRRH >gi|311092479|gb|AEKJ01000001.1| GENE 50 55970 - 56587 520 205 aa, chain - ## HITS:1 COG:L0306 KEGG:ns NR:ns ## COG: L0306 COG2003 # Protein_GI_number: 15672989 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Lactococcus lactis # 72 204 92 224 226 108 42.0 9e-24 MENTNQYLLSNDEEIINTFIKGLQEINITTFEQLRLECKARNITTFTDFFEYTRSHEAPE TLSLGAELLLNRVKAIKREKMESFCSSSQIGYYLSNVLSGCYQEHLMAVYVDVKNKIIAE KVIFKGTLNQAIIHPRDIFRWAIIYNAAGFFLAHNHPSEDLTPSEQDIQVTKKISSVSEC MGIRFLDHFIVNTGNYLSFKEMELL >gi|311092479|gb|AEKJ01000001.1| GENE 51 56620 - 57297 732 225 aa, chain - ## HITS:1 COG:VCA0102 KEGG:ns NR:ns ## COG: VCA0102 COG0637 # Protein_GI_number: 15600873 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Vibrio cholerae # 9 225 6 219 219 93 29.0 4e-19 MKTNLNKTFKAVIFDLDGLLVDSERLYWRANIQAAQELKTPIPRDAYLEIVGASPEKVAE FYHDFFADASLKDKFISRTNELFSLWLAEGQLHLKKGVLQFLQKLKRDQKKCIIASSNTK EVIEQILQKFHIENYFDFFICYDDVKQARLQAKPAPDIYLDAVKRLDMQCNELIVFEDTG IGVEAAQKAGLRCVMIPDLKPATIQDKKLAYLICNNFLEFLKNNY >gi|311092479|gb|AEKJ01000001.1| GENE 52 57278 - 58543 1297 421 aa, chain - ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 1 415 1 427 427 221 30.0 3e-57 MNVKAIIDFIEHLPRIHQKNDLTYIRRILRELNEPQDKVKTFHITGTNGKGSTAYYLSRL LQKTGQSIGLFVSPYVEVFNERIQINGQPISDELLISAYQAVKNAIRNIQKKYPEFNLVT FEFETAMAFWIFAKQNCDYAVIEVGIGGEHDKTNVIVPQVSIITTIGLDHEKVIGPTMFD IAHEKSGVIKKNRPVVLGNVPAKVLPLLMEKARKKNAPVLLLGRDFQVECNDDIVVTINK RLFHFKLRPQTEAYDIALALITFATLKFDISVSDIEDTINNTIIPARYQIVQKKPLIMVD GAHNIQAVHELISYVRKISQGRIYILLGMMKDKDIAKVVKLFDPKEKITFTRISYPRAAT KSDIEEDLNCHINFIDDYRLAYDILKNKLTQDDILVVTGSFYLAGAILNYIHGDRHEDEF K >gi|311092479|gb|AEKJ01000001.1| GENE 53 58543 - 61182 2820 879 aa, chain - ## HITS:1 COG:BS_valS KEGG:ns NR:ns ## COG: BS_valS COG0525 # Protein_GI_number: 16079861 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Bacillus subtilis # 4 876 8 879 880 1152 61.0 0 MTELAPKYDPRAVEEGRYQTWLDEDLFKPSGDKKAHPYSIVIPPPNVTGKLHLGHAWDTS IQDTLIRFKRMQGYDTLYLPGMDHAGIATQAKVEEKLRKQGQDRHQLGREKFIKQVWDWK DEYASIIKSQWGKMGLSLDYSRERFTLDDGLSKAVRKVFVKLYEEGLIYRGQYIINWDPK LETALSDIEVIHKDDNGAFYHINYPLADGTGSVEIATTRPETMFGDTAVAVAPGDERYKD LVGKELILPLVGRHIPVIEDQHVDPDFGTGLVKITPAHDPNDFLVGNRHNLQRINVMNDD GTMNEQAGKYAGMDRFDCRKALVEDLKNEGYLLKIEPIVHSVGHSERSGVQIEPRLSTQW FVKMKPLADKVLSNQKEDDKVNFVPERFEGTLEHWMENVHDWVISRQLWWGHRIPAWYNK KTGEMVVQEEAPKDIENWDQDNDVLDTWFSSALWPFSTLGWPDEEAADFKRYFPTNALVT GYDIIFFWVSRMIFQSLHFTKRRPFENVVLHGLIRDEQGRKMSKSLGNGIDPMDVVEKYG ADSLRWFLLNGTAPGQDTRFSYTKMDSAWNFINKIWNASRFVIMNLPEDAAAAHMPDVDT FDLSDKWIFDKLNRVVKKVTRLFDEFQFGEAGREMYNFIWNDFCDWYIEISKVALNGTDE ILKKHKQDNLVWILDQILRLIHPIMPFVTEKLWLSMPHNGKSIMVASYPVAHPEFENHVA EQDMEFLIEIIKAVRNIRMEVNAPMSSAIDIMIQLDNSKDKHILLDNRDYVENFLHPKSL VVDTNVVAPKLAKSAVIAGAQIFVPLAELVDLSEEIAKMDKEIDHLQEEVKRCKAKLANK GFVDHAPEAVIEKEKAKQADYESQLAGAVQRLKELKESN >gi|311092479|gb|AEKJ01000001.1| GENE 54 61474 - 62673 1232 399 aa, chain - ## HITS:1 COG:L183112 KEGG:ns NR:ns ## COG: L183112 COG0301 # Protein_GI_number: 15672361 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Lactococcus lactis # 1 381 9 389 406 456 58.0 1e-128 MVRYGELSTKGKNRRDFIAKLADNIQKALSTFPAIKIYPKHDRLHIILNGAPFDEIDQKL KKVFGIQTYSPVIKTDRTLSAIEETALDLMKATFKDGMTFKIHTRRSDHEFEYDTNQLNA LVGDYLFDHMSDLKVKMKNPDLVLRIEVRKDAIYISNQLLHGAGGMPVGTAGRAVMMLSG GIDSPVASYLAMKRGVKIDMVHFFSPPYTTDKALAKAEELTGILANYCGKINFIAVPFTE IQEQIKEKLPEGYLMTVQRRFMLQLADKIREMRGGLAIFNGESVGQVASQTLESMVAIND VTNTPVLRPVATMDKTEIIALADKIGTFELSIQPFEDCCTIFAPPRPKTKPKLDEARKLQ DRLDSESLIQRALDNIKIIPIYPNQKFINDHFEDSDNLL >gi|311092479|gb|AEKJ01000001.1| GENE 55 62702 - 63856 1053 384 aa, chain - ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 381 1 380 381 387 51.0 1e-107 MIYFDNSATTQVNPEALDTYIKVTKDIWGNPSSLHKFGDRSHQLLEASRNQIAKLLGVNS TEIYFTASGSESDNWAIKGTALAKKAFGKHIITSSVEHAAVSHSIRMLENEGFDVTVLPV DSNGLVDPKDLANSIRSDTILVSIMGVNNEIGAIQPIVEISKILEKYPNITFHVDNVQAL GKAIWSRVFTSRVDLMSLSAHKFHAPRGVGILYKKPGKMLVPLIDGGGQEGGLRSGTENL PAIAATAKAMRLYLANEKDYVARENQIKEKIINYLSHKPGIHIFSPINDNFVSSILCFAL EGIRGETLVHTLEKYDIYISTTSACSSRSSLESSTLQAMRIDNNIAESAVRLSFDDTNTL EEAKQFIEIFDGIYQHFAKINHLN >gi|311092479|gb|AEKJ01000001.1| GENE 56 63957 - 65684 1590 575 aa, chain - ## HITS:1 COG:L7722 KEGG:ns NR:ns ## COG: L7722 COG4477 # Protein_GI_number: 15674133 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Lactococcus lactis # 31 574 23 568 576 168 24.0 3e-41 MTEDGGNHMSAKQTILIVFLVVLLMAVLLGAIIINKYLKNVISSLHDDLAKLDDPLIAED IDRLDKMDLAGASLERFSKDRKNYNRIFSEDVTKSLELLNNAVAANESYKLYTAYEIVKQ VKPKVQEIGTQVLALQKGFMELLKFTRDNKLQLDALKKQYDDKRKYILSTSYDYSLALEA LEDELHAIGCQFESVKNLTIQGDHVEAKRVLQKIRSAITKLEDELPLVKKTSSELLDIFP EQLTEISTTYKSMLKNKFSIVEIDICSTVKQLRNSIEESKKLVSQLKLKDADSKNHSIKE TIDKCYDILTKEYKAKAFVDQHQAKIVKALTHTITNSVKLIKNLEHIDKSYELTHGELDE VRGLSSRIQHLNSEFDVDCQKVSDGGVVYSSIEQKWHKLIDEIIKTDERENKIFKDVDGL YDGEKIANASIEKFKQNVSLIYRKMERRNLPGKPDSFLQLYTLVVNEIAKTADKLDQVRI NLEEISHELIQIQNDIDRLEQDTKEILDSADLVELTMQYSNKYANRNDIIHANKVAYDLY NNKYEYKEALDILAAAIEKVEPGSYKRIESDYYKK >gi|311092479|gb|AEKJ01000001.1| GENE 57 65928 - 66554 979 208 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227520659|ref|ZP_03950708.1| 30S ribosomal protein S4 [Lactobacillus gasseri JV-V03] # 1 208 1 208 208 381 87 1e-105 MEDIFMSRYTGPSWKRSRRLGISLSGTGKEISRRNYAPGDHGPGNRTKVSEYGEQLKEKQ KLRWMFGLNERQFRNLFVLAGKIREGKHGVNFMIMLEKRLDNVVYRLGLATTREQARQLV NHGHILVDGKRVDIPSFQVKVGQEISLKEKSKNLQQVKDALEATVSRPAFVTFDESKMTG SLVRLPERDEMEPEIDESLVVEWYNKKL >gi|311092479|gb|AEKJ01000001.1| GENE 58 66598 - 67935 1484 445 aa, chain + ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 11 439 3 425 427 476 58.0 1e-134 MKYIIEDVQKMQPLAYRMRPHSLTDVVGQQHLIGPGKIITRMVEAKLLSSMILYGQPGIG KTSIATAIAGATKYAFRKLNAATDSKKDLQIVAEEGKMSGTVILLLDEIQRLDKSKQDFL LPLLESGQIILIGATTENPYIAISPAIRSRCQIFELKPLQSEDISKAIDHALLDPINGLG KENVTLTPEARNILIQKGNGDLRSTLNALELAVLSTKQELMQTNQYHNKLTISESEMLNS VQFKSYNFDSNGDSHYNLLSAFQKSIRGSDTDAALFYLAELCLAGDLKSICRRLLVTAYE DIGLANPAACSRTTLAVQAAEAVGLPEAKIILANSIIELCTSPKSNSAYLAINQAIDLVA NTKDIDIPLSLKDAHFKGAAKLKHGQGYKYPHDFNKDWIAQQYLPDQLINTILFKPKGNS KFEEAIKAQYLKLKDLQTKNLNKSN >gi|311092479|gb|AEKJ01000001.1| GENE 59 68190 - 68474 227 94 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSILQLIILLFIMLILLVAYFLYKCQLQNTFLIYNIKDNNNLRNLFKCTSLILVLVAILG LIILFSFDKYYNLITLFLASVVLVLFSLMLNILK >gi|311092479|gb|AEKJ01000001.1| GENE 60 68532 - 69005 626 157 aa, chain + ## HITS:1 COG:SP1996 KEGG:ns NR:ns ## COG: SP1996 COG0589 # Protein_GI_number: 15901819 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 1 146 1 146 150 149 52.0 2e-36 MSKQYKNIQIAIDGSKEADVAFKSAVEIAILNDANLEILHVVDTRAFQDVSSFDSEMVEQ VSNDAKTKIEDYYQRALDAGLKHVHYSIEYGSPKNIIAHEFPNEHNIDLIVIGATGLNVI ERLLIGSVTEYVTRTAVCDVLVIRQQLAQKQDIKNNK >gi|311092479|gb|AEKJ01000001.1| GENE 61 69076 - 70269 906 397 aa, chain - ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 386 4 388 414 318 47.0 1e-86 MAKVENKSDWFDRVAWGIVLSVFTLALISLYAIWVAASNDPNLGRPKYIVAVQGLWYVVS IAIVIFIMRFDSEQLFKLAPYAYATGIILLIAVLFLYNRSTFNETGAKSWFKLGPLTFQP SEVMKPAFILMLARVVNQHNLRFEHQIKSDWQLIGKIMAYLLPVAILLKLQNDFGTMLVF IAIVGGVILVSGITWKIIFPVYGVAFLLGAVAILLVTTPGGQVILGHFNFRAYQFERINS WLNPFGDTSKGAYQLWLSMKAIGSGQIFGQGFGKINVYVPVRTSDMIFSVIGETFGFVGS CALIVLYGYLIFKMVRITFETKNTFYSYISTGIIMMILFHVFENIGMGIDLLPLTGIPLP FVSQGGSALIGNMIGVGLILSMKWHHKDYIFSRVKDF >gi|311092479|gb|AEKJ01000001.1| GENE 62 70286 - 70513 338 75 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1233 NR:ns ## KEGG: LGAS_1233 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 75 1 75 75 102 70.0 7e-21 MSKKLENIEIEVNEQKNASVPTWEVIIPGKKSVGIIEKDNDRYHAITAKSGYSIYSKTLE SAINELLSYFTLHEK >gi|311092479|gb|AEKJ01000001.1| GENE 63 70527 - 70841 280 104 aa, chain - ## HITS:1 COG:SPy0370 KEGG:ns NR:ns ## COG: SPy0370 COG0759 # Protein_GI_number: 15674519 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 11 92 1 81 86 105 65.0 3e-23 MDTFISIFKLMKKLLINMVIIYQKCISPLFPPTCRYYPTCSKYMITAISKHGCILGIIMG VARIIRCNPFVRGGVDPVPDFFTIRRNPHPEKYMDPIIAKKFYK >gi|311092479|gb|AEKJ01000001.1| GENE 64 70889 - 71878 1112 329 aa, chain - ## HITS:1 COG:BH3739 KEGG:ns NR:ns ## COG: BH3739 COG1077 # Protein_GI_number: 15616301 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 2 329 3 330 334 396 61.0 1e-110 MAKDIGIDLGTANVLINIAGKGIVLNEPSVVAVDTNSNKVVAVGTEAYKMVGRTPGNIRV IRPLKNGVIADFDITEAMLSYFINKLNVKGFMSKPNILICAPTGVTSIEQKAIIQAAEKS GGGRVYLDFEPKVAAVGAGLDIFKPQGNMVIDIGGGTTDIAVLSMGEVVTSRSLRWAGDK MNQAVINYIKNNKNLLIGQCTAEQIKIQIGTAFDADPEKVISVRGRDIIDGLPKQTVVSA TEIQSSLEDGLMSIVAATKEVLEKTPPELSADIIDRGIMLTGGGALLTNIDKLITYYLQV PVLVADNPLEAVANGTGILLKNIQEHSKK >gi|311092479|gb|AEKJ01000001.1| GENE 65 71944 - 72177 290 77 aa, chain - ## HITS:1 COG:no KEGG:LJ0942 NR:ns ## KEGG: LJ0942 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 76 18 93 93 64 46.0 2e-09 MKDLGIGALIRIITYLVTIAYSFKVVKCLALEKFIRKGKTNEVKILLIFIAISLGYLVGQ FLINLMYYSMLLKWLFI >gi|311092479|gb|AEKJ01000001.1| GENE 66 72227 - 72661 584 144 aa, chain - ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 8 138 4 135 138 116 52.0 1e-26 MVEAEKLLTVTVVTPDGVIYSHRSSKISFRAIDGERTILYNHLPLITPLAIAEVKVKRES KHGVDHIAVNGGYMEFSDNKATIIADSAERARNINVERAQVAKERAEKHIQEAKSHHNDR EMYKAKIALERALNRLHVRENLGK >gi|311092479|gb|AEKJ01000001.1| GENE 67 72673 - 74115 1826 480 aa, chain - ## HITS:1 COG:L6563 KEGG:ns NR:ns ## COG: L6563 COG0055 # Protein_GI_number: 15673746 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Lactococcus lactis # 1 465 1 468 469 717 78.0 0 MSKGKILQVIGPVVDVQFPVDKKLPDINNALHVKNTNGDILVLEVTLELGDGVLRTISME STDGLRRGMEVEDTGGPISVPVGKATLGRVFNVLGDPIDGGPEIADDVQRDGIHKDAPKY NDLSTSEEILETGIKVIDLLEPYVRGGKVGLFGGAGVGKTTIIQELIHNIAQEHGGISVF TGVGERTREGNDLYFEMKASGVLAKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGL DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSIQA VYVPADDYTDPAPATTFAHLDATTNLERRLVEQGIYPAVDPLESTSSALDPEVVGKDHYE VAVQVQHILQRYQELQDIISVLGMDELSDEEKLIVARARKIQFFLSQNFFVAEQFTGLPG SYVPIKETIKGFKMIIDGKLDDLPEDAFRNVGPIEDVINKANTMGVVPSDPDAKAMLKAK >gi|311092479|gb|AEKJ01000001.1| GENE 68 74139 - 75092 1010 317 aa, chain - ## HITS:1 COG:SPy0759 KEGG:ns NR:ns ## COG: SPy0759 COG0224 # Protein_GI_number: 15674807 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pyogenes M1 GAS # 1 317 1 291 291 244 43.0 2e-64 MTESLLELKKKISSIQKTGQITEAMRMVSGVKLNRTEKLNQAYTVYNDHIRQTISHLVSA KIFDEFNKKNVEMCDDEINSLDYSDIFELGKIVDLIQPRKEIKSTGYLVISGDRGLVGSY NNQVIKNMMDIFKDAEIEKRDVKILAVGSIAAQFFKKQNLNVVYEYKGVDDVPNYKQVRD IIQSAIKMYQNGVYDELYVCYTHHVNTLSSAFRVQKMLPISDLDISDEEVVPKDYIVAPS VDSVLRSVLPQFARSMIFGAILDAKTAEHASSMTAMQSASKNAEDVVSRLTTKLNRARQA QITTQITEIVGGANALE >gi|311092479|gb|AEKJ01000001.1| GENE 69 75110 - 76621 1849 503 aa, chain - ## HITS:1 COG:lin2675 KEGG:ns NR:ns ## COG: lin2675 COG0056 # Protein_GI_number: 16801736 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Listeria innocua # 1 498 1 498 504 768 76.0 0 MSIKAEELSALIKQQLENYSEKLNVDEVGTVTYVGDGIARAHGLDNVLSSELLEFSNGSY GIAQNLEANDVGIIILGKFDDIREGDQVKRTGKIMEVPVGEALIGRVVNPLGQPVDGLGE IKTTKTRPIESKAPGVMERQSVNQPLQTGIKAIDALVPIGRGQRELIIGDRKTGKTALAI DTIINQKGQNVICIYVAIGQKESTVKNSVQTLKRFGAMDYTIVVQAGPSEPAPMLYIAPY AGTAMGEEFMYNGKDVLIVFDDLSKQAVSYREISLLLRRPPGREAYPGDVFYLHSRLLER SAKLSKKLGGGSMTALPFIQTQAGDISAYIPTNVISITDGQIFLESDLFFAGTRPAVNAG ESVSRVGGSAQIKAMKKVAGTLRVDLASYRELESFAQFGSDLDQATQAKLNRGRRTVEVL KQPLHKTLPVEDEVLVLYALTHGFLDEIPVPDILRYENELYDFFASNHNDLLDVIRKTGN LPDEDKLKAALKDFNEGFSIGKN >gi|311092479|gb|AEKJ01000001.1| GENE 70 76611 - 77180 446 189 aa, chain - ## HITS:1 COG:lin2676 KEGG:ns NR:ns ## COG: lin2676 COG0712 # Protein_GI_number: 16801737 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Listeria innocua # 7 178 6 177 179 87 29.0 2e-17 MSLSREEIASRYGMALFEYAKENAKLALVHDEVDELIKVLQENPKFELLMASPLLSSNDK KQILKAVTAEMTVEMANFLHLVLEYGRFEDLGCILQAFDKFYDREMNEASGVAISAIALD DEQLAAISKSYANKFNLSNIHLTNQVDANILGGVVLKVGDHIIDGSIKNKLQQIRKQLSI SKRGETIEH >gi|311092479|gb|AEKJ01000001.1| GENE 71 77180 - 77680 757 166 aa, chain - ## HITS:1 COG:SP1512 KEGG:ns NR:ns ## COG: SP1512 COG0711 # Protein_GI_number: 15901359 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Streptococcus pneumoniae TIGR4 # 22 166 19 163 164 93 40.0 2e-19 MQIMLAAIKLELGDTLYYLLIFAALLWLVNHFAFGPVSSMMEKRRKKVISDLDDAENKQK KAELLANQREAELKNSKQEATQILSIAKSNAEKTKDGIISAANSEAASIREKATQDAAQA KADALNQAHDAVADISVTIAEKLIGKNLSMADQKDLVDKFIKGLNE >gi|311092479|gb|AEKJ01000001.1| GENE 72 77725 - 77937 389 70 aa, chain - ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 1 66 1 66 70 58 51.0 4e-09 MKQLAAALVAGLTALAACWGNGRVISKTIEGMTRQPEIFNELRTNMFISVGLIEAVPILA IVISFLILFL >gi|311092479|gb|AEKJ01000001.1| GENE 73 77956 - 78672 494 238 aa, chain - ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 1 238 1 237 238 182 42.0 7e-46 MGEKSIVVNFLGLNFNITNCFSGTLVAVAIFGLVYWLSGKVCLKPGKKQNFLEAIIDFTN GIVKNNVSDSEVQSKLSLYAFTLFLFIFFMNQLGLFLEVKINDQILVKSPTANPLITMTM AMMTLLLSYHFGIKKFGAKGFIANYAKPVGFLLPINVIEEFTNFLTLSLRLYGNIYAGEV LLNLIGEHLAKSAGWATIFASVPLTMIWQGFSIFIGSIQAYVFVTLSMVYINKKVMEE >gi|311092479|gb|AEKJ01000001.1| GENE 74 78767 - 79396 891 209 aa, chain - ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 284 66.0 9e-77 MGKFTVLNHPLIQHKLTIIRKKTTGTNEFRQIVGEIGGLMVYEMTRDLPLKNVEIETPIG KTVQKELAGKKLVVVPILRAGLGMVEGVLQMIPSAKVGHIGMYRDEETLKPHEYFFKMPP EVEQRQCIIVDPMLATGGSANLAIGALKKRGVTDIKLAVLVAAPDGVKAVQKENPDVDIY AAAEDEKLMSNGYIFPGLGDAGDRLFGTK >gi|311092479|gb|AEKJ01000001.1| GENE 75 79494 - 80540 1097 348 aa, chain - ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 17 341 7 338 345 280 46.0 4e-75 MIWLVNREWFMEGGNNKLDTQIFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEA VKNVYRAKGRPSDNPLIVTVADEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGTL PDAVTGGLPTAAFRCPQDPLTNELIQTLTRPIVGPSANTSTKPSPTTAEHVYHDLKGKIA GIIDNGPTKIGLESTIIDLSVDQPVVLRPGEITPDELSEVLDKKVLLNKGTVQTKDVPKA PGMKYRHYAPSSPVYIVDDPADFAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAA HNLFGALRYFDSNEQIKTIYVQGFAKGNISAAYMNRLNKAASGNHFKK >gi|311092479|gb|AEKJ01000001.1| GENE 76 80494 - 81333 329 279 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 1 277 16 289 294 131 35 2e-29 MPSFRTLRTKFIAENPQILAEDVDFVLAERQNLTPSQYRLQLDQDLPKEQLTQIKKDLNK LHKGMSPQYIVGHAWFLGYSIDVHPGVLIPRFETEELVTWALDYLKDNSKVLDLGTGSGA ITVALAKKAECKNINNIVYYASDITDSALRQSEENFLKFNLNDIITRKADALIGLEKFDL IISNPPYIKNSEKDLMDQNVIKNEPEEALFAGADGLDFYRRFVKQVPKHLNKDGHFFLEF GFSQKDLLAELFAKELPEFAIEFKNDLAGKPRMVHGRWK >gi|311092479|gb|AEKJ01000001.1| GENE 77 81326 - 82414 1541 362 aa, chain - ## HITS:1 COG:L0373 KEGG:ns NR:ns ## COG: L0373 COG0216 # Protein_GI_number: 15672577 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Lactococcus lactis # 7 357 4 355 357 398 59.0 1e-110 MDKVMAQLESLLAHYEELQEMMSDPEVINDTKKYMEISKEEADLREVVEKYKLFCNDQSE IANNKEIISHESDSDLIDMAKEENIALEEEVNKLEEEIKILMLPKDPNDDKDIIMEIRGA AGGDEASLFAGDLLRMYQKYAENQGWQMSIIDAEETEVGGFKRVAVMISGDKVYSKLKYE NGAHRVQRIPVTESQGRVHTSTATVAVMPEYEQVDLDLDPKDIRVDVYRSSGAGGQHINK TSSAVRMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDFYESQNQASYDAKRKESVG TGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELEDIISALVLYYQTKQLEKMADD NA >gi|311092479|gb|AEKJ01000001.1| GENE 78 82447 - 83040 645 197 aa, chain - ## HITS:1 COG:SPy1140 KEGG:ns NR:ns ## COG: SPy1140 COG1435 # Protein_GI_number: 15675117 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 196 1 188 189 263 61.0 1e-70 MPQLFFRYGAMSSGKTIEILKVAHNYEVQGRKIVLMTSGLDDRSGVGVVSSRIGLHRTAV AIDHDMNIFSYVKEENKKSLNIEHEPLACVLIDEAQFLTRQHVLQCTHIVDDLKIPVMAF GLKNDFQNHLFEGSENLLIFADKIEEMKTICHYCGHKATMNLRINNGVPVYEGEQVQIGG DESYYPVCRHHYFNPEK >gi|311092479|gb|AEKJ01000001.1| GENE 79 83170 - 84522 1333 450 aa, chain + ## HITS:1 COG:SPy1035 KEGG:ns NR:ns ## COG: SPy1035 COG0769 # Protein_GI_number: 15675032 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 3 450 1 444 445 434 48.0 1e-121 MFIKTNLAKFLGKVSYLVLHNIFNGGTSFPGKLAVKIDHNILEELASDYEVILVTGTNGK TMTTSIITEALKEKYGDVLTNPSGSNMLQGIITAFLAHRKKHSQRKIAVLEVDEAYLKII TTYLKPKVVVLTNIFRDQMDRYGEIYTTYEKIITGIKNCPDATIVANGDASIFSSDDLTN QKIFYGFDLNNSDQKTDLLAPVNTDGVLCAKCHNILHYHEIVYANLGNYFCPKCNFHRPK LKYTVNEIVKQTPKSLTFKMGTKVYQMAIGGTYNIYNALAAYSVAKEFGLSDDEIARSFS KNKRIFGRQELINYSDKEIILILVKNPVGLDSVLNMLNTENDDYSLITLLNANHADGIDT SWIWDSNYESLHKENIKHILVGGLRHQDMHLRLKVAGFDPKIMETTPTDDELIDAIPNLP CKKIYILSTYTAMLSLRKKMAERKIINVNM >gi|311092479|gb|AEKJ01000001.1| GENE 80 84525 - 85538 886 337 aa, chain - ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 2 334 6 314 328 193 38.0 4e-49 MEFLKTKKLIEMMVASKIVPGVNYLIFKNNDVWQNTVGLSQIIPQPVPLKADAIYDLASL TKVIGTTNVLLKLADEGKIAFNDTLKMYLPEFLDKRVKLSDLLTHTSGIKGWIANRDQLN ARELLQAIINLPVTEEFEHKVRYADTNFILLGLVLEKIYQQDLQDIIMHEVIKPAGLKAT SFAPDANKTVPTAMNQQGIMLCGVVHDPKARVLGKSCGSAGLFSNIADLYRLAQGYVGLR DDILPFGSATLSELYKIKTPAKLHARSWGWDLCFDPSDHHTLIYHTGFTGTFMLLDKVKK TGLIVLTNRIYPSGHNLIFLKMRQKIIESFLLENSII >gi|311092479|gb|AEKJ01000001.1| GENE 81 85877 - 87106 836 409 aa, chain - ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 407 1 396 399 224 36.0 2e-58 MKKILIVAKETFFRQIRSWGFIFMVLGPFIIIGINIIIGLATAKSANQKNDTDNRIAVVC KDNLLKTNLKTNPDVKLYDNQATAGKLFEKGKIKGYLYLTIKKNQQLDATIYLQPTDSSN IHKRSSVIISGLQNNINFATAKLSDEQKKKIMTAPEVHVKQAEKSKEIKNDTGIKIICFY AVCFILYFILLIYNGVTTQEIATEKGTKIMEVVFSSMPGGDYFIGKIMGLIGEVLLHIGI YLVGGYSIWRLLPYFKEGKTLVHQFDPFVGAILGNIGVYSLIYVVAALIICLILAALCGA LASKPENAGKTAQFMTILIILCFILATQFNNNVHSNLLFVLSYVPFISSFMMPIRIIYEV ASTWEILISISITVGFLIGILILIRRIYPRLILQTDDSVFKALKKAMMK >gi|311092479|gb|AEKJ01000001.1| GENE 82 87103 - 87996 1085 297 aa, chain - ## HITS:1 COG:SP1717 KEGG:ns NR:ns ## COG: SP1717 COG4152 # Protein_GI_number: 15901551 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 294 1 294 297 346 57.0 3e-95 MLTIKQLNKSFGSKQVLYDVNFTAQDGHILGLIGKNGSGKTTIFHSILKFVEYSGAISID GHPFGAGDYNSVGYLPEERSLLPKLKIKQQIKFLARLKGMDDKEIDKLLADWMLRLEVKG KVDDKIKSLSKGNQQKVQMIATLIHNPQLIILDEPFSGLDPLNVEIMKREILNQKSKGAT VIFSDHNMSNVEELCDDVVMIDNGKVVLNGNTYDVRNKFGLTRIYVRTSMAMEDLAKIEG VEKAELLNDGRIKLYLTSAEYGYTIFDTLSQGKYIQTFDQEPPTLNEIFKQKAGEGL >gi|311092479|gb|AEKJ01000001.1| GENE 83 88087 - 89427 1552 446 aa, chain - ## HITS:1 COG:L0012 KEGG:ns NR:ns ## COG: L0012 COG0166 # Protein_GI_number: 15674150 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Lactococcus lactis # 5 446 4 448 448 578 64.0 1e-165 MTKVLSFDDSKLTPFVHDNELKEMQAMVNAADQELREGTGAGADFRGWIDLPVNYDKDEF ARIKKAAAKIQKDSEVLIGIGIGGSYLGAQAAIEFLNSAFYGKGKEKYPTVVFCGNSISG SYLYDLIEWLGDKDFSLNIISKSGTTTEPSIAFRVLKEKLVAKYGKEEAAKRIYATTDRQ KGALKTEADAEGYEEFVVPDDLGGRFSVLSAVGLLPIAVAGGDIDALMKGAADARSDYQT TDVLGDNPYKYAALRNILYRKGFTTELLENYEPTLRMFGEWWKQLFGESEGKDQKGIYPS SANFTTDLHSLGQYIQEGRRNLMETVVRVENPSHDITIPDDAENLDQLNFLSGKTMNYVN DRAYEGVVLAHTDGGVPVMTVNIADQSEHTLGYMIYFFELAVGISGYLNGINPFNQPGVE SYKRNMFGLLNKPGYEDLHDDLTKRL >gi|311092479|gb|AEKJ01000001.1| GENE 84 89730 - 91829 1333 699 aa, chain + ## HITS:1 COG:SPy0807 KEGG:ns NR:ns ## COG: SPy0807 COG1368 # Protein_GI_number: 15674849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 699 44 735 736 533 44.0 1e-151 MFAFYFYFKLQLNDYYQQIIALISSLGSTIILFSIAFYITKPLLSYIFMILLDIANTTLL FSNIIYFRQFNDFLTFKTIQNTSKVTQGLGKSTVALMQPLDILIWLDIIVIVCLLLLKII KLDQRHYNINLSFAITSFGLFVALLNLALAETARPKLLRNTFDRSYVVKYIGLSNYTLYD LTRSAQSGSSKKNINASQINKILAYTRKKYAGINPKYFGKAKGKNVIILHLESFQQFLID LKINNKEVTPFLNSIYHSKNTISYKNFFHQVGLGRTSDAETMLETGTFGIADGPLFSSLG NENTFQAAPQILRQRGYTSAVFHGNIGTFWNRNEVYKNLGYNYFFDSSYYFNEKKDKVGY GLKDKLLFAESIKYLEQLQQPFYVKFLTVTNHYPYNMDSEDLDKDFKTTNTNNTTINNYF QTAHYLDQSIREFFEYLKKSGLDKKSIVILYGDHYGVGSSDNETNALAPILNKADKPWSE YDTINLQRVPFMIHMNGLKGGIKSNIAGEIDVLPTLLHLLGIDTKNYIQFGNDLLSNKRQ KFVIFRNGTIITPHYIIVGGRNNLNRIYDFNTGEKINNLTDKQKAHIEHLIKQAAKSLRY SDLLNNRNLLRFYTPKGFIPVDPLTFNYQLNYLNMIRIRKMVGNNSTSLYSENRGSTIDM YKTDAFQINKDKLFDLPANVIKTRKEAKNLLKEDAPLNK >gi|311092479|gb|AEKJ01000001.1| GENE 85 91945 - 92658 594 237 aa, chain - ## HITS:1 COG:lin1542 KEGG:ns NR:ns ## COG: lin1542 COG0745 # Protein_GI_number: 16800610 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 232 1 226 228 182 39.0 4e-46 MNILLIEKEEAIIQILEAFFMKEKWNYDIATDGVIGTQMYSLNKNKYNLVLVDVELPSLD GVEVVKYIRNISLETPILVLAEKKFEEELISSLQQGADGYLARPFSPLLMVARIKALYRR INLERGKRVNLNIEQVICTKYLKIYPEKHKVIFNKQEINSLSPKEFAILTILASSPTQVF SRKKLLELVWGNEYFGDARTIDTHVKTLRQKLEKVGPHVIITVWGVGYKYDELNFDI >gi|311092479|gb|AEKJ01000001.1| GENE 86 92660 - 93049 395 129 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1262 NR:ns ## KEGG: LGAS_1262 # Name: not_defined # Def: integral membrane protein # Organism: L.gasseri # Pathway: not_defined # 1 129 7 135 136 164 62.0 1e-39 MLYIACGIILFMIGLIWLISPAKKPNNLYGYVSYLAMVSEEGFKFAQKSAAKYFMLYGSI QFGLGLIIHFLKWDGCIVLWLLTFYLFIIFPFISTEKALQRFLKARDLLPYDYIEPDKVK HKLTKGFKD >gi|311092479|gb|AEKJ01000001.1| GENE 87 93061 - 94029 843 322 aa, chain - ## HITS:1 COG:lin2215 KEGG:ns NR:ns ## COG: lin2215 COG1482 # Protein_GI_number: 16801280 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Listeria innocua # 2 318 3 316 318 301 47.0 1e-81 MEPIFLKPYFRSKIWGSRKFEKIFNDLPEGKIGEAWIISGYPNCSSTVIKGSYQGLNLRE LYQQKPDLFGQPHAAEFPLLVKLLDANDNLSVQVHPDDEYAKINENDSGKTECWYILQAE PGAKLIYGHHAETKEQLAAWIKNGQWNKLLRYVPIKTGDFLYVPAGCVHALTKGIMVIET QQSSDVTYRLYDWDRIDNKTGQKRELHIQQSLDTIQVPHVDPYLERAVSKFPAATLVRLA NPPYSPHFYLWQLDVFGEFEWNMLNYQYLLVSVISGQGKLIFDGNDYNLSLGDSFIVPNK YNTFKFVGESLKIIISAPTNEE >gi|311092479|gb|AEKJ01000001.1| GENE 88 94057 - 95448 958 463 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312871909|ref|ZP_07731991.1| ## NR: gi|312871909|ref|ZP_07731991.1| hypothetical protein HMPREF9218_0715 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0715 [Lactobacillus iners LEAF 2062A-h1] # 1 463 1 463 463 877 100.0 0 MVLSIADCKYFANRVNDFLTFPELEQLNSEQLWRLKNLVRNIKNISYDCFSTSVKAYALT GDAIYFEAFDKLLRKDQLLSPILNWSITNQTMPSFLLDRDGQIIINEGIKHDSWYVYDFK YDYHLKIPELKSVCNKLGLTSAELLSLVQKCSWQIVVKLLFLIQRLIVSKHYYMNYLNMA SIIKKAIVDDKIAWLVNILEFVYQRKLTLTCKFDEQWYIDNSVYPLEFCKENMLSGDLLT EDDYNMLVQEKIAIIFRNYEHMEVLSAFIHDYLEKYLTSQLTYEDARLDVNKVINGVNLK KNITALSKIVVKSIPLSLKKILEDVMNDAESCDQDLLGFNIFADSDANPYYCNYTNGLRY FKLATKYQLVLKYMQKVFSDDNTIYRWLLWWRLQQWLRQNKVVAKGYITTFSYISKLPVE LTEWLEQGVVPQKITLTDNVYVIIPKRIQKRLQKYPLNLQDYE >gi|311092479|gb|AEKJ01000001.1| GENE 89 95580 - 97547 1408 655 aa, chain - ## HITS:1 COG:SP0913 KEGG:ns NR:ns ## COG: SP0913 COG0577 # Protein_GI_number: 15900794 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 3 655 2 661 662 228 30.0 4e-59 MSFLMAKKFALKNLKANKVLEIPFVLSSGIMFILFNIMVSLASNSYVIHRHKFLISIINM GIVIVGILAVIFVLYSVSVLLKRKNKTLALYSILGLEKKHIRKIISIEFMYLFTMILAIA TVGGYIFGQLAFLGLNYLMRDMGVNVMHYPLSILAIVLTMVVVIILYIITVIRLSFTVYI STPTELLNKQHSGEGEPKSRYLVLLFGLITLSAGYWIALTTKGTLESITNFFTAVLLVIF ATYALYVALTVVALKLQKKHSSYFKPVKFLSVSGLLYRIKSNALSLASIAILGSGVIVTL SAVTMIYYSANMNFKNAIPRSYELISGENIDLHNYKKVSNTLKKQVEKTVDNKSQVVHSY VGYNCESWCEKKGDQLKILNNESLSSRTSKMLYVGDLVGYNANLHKKIKLQDDEILLCNN RIEKLNVHKLRIGGRTFKVRTVDNFVPANVAIESYGIIVKDLKTMLFFSKLFVKATGGMA TNAKISCSYNWDVKGISYKKYSKRVHVLSANKVEFVDAKEFLTRFYEINGGFLFIGIIIG IIFLVGTILIIYYKQVSAGYEDRHKFRIMKEIGLEDALIKKSNTSQLMLLLYSPLCVSII HCIVASKIVFNLVQMFGGIKWQNYNICLAAVISIFFIIYLLVFKITSRIYYNIVR >gi|311092479|gb|AEKJ01000001.1| GENE 90 97547 - 98302 274 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 4 250 5 238 311 110 28 4e-23 MAILELKNIKRTYKTKCVVTEVLKGIDFSVEAGEFVAIMGESGAGKTTLLNVIATFDKPT SGSVILNGKEISTLKNSEISTFRRNKLGFVFQDFNLLDQFNNRDNIYLPLVLSNQKPQLM QERLDQIKDQLGISELLNKYPYEISGGQKQRVAIARAIITKPDLVLADEPTGSLDSTSSE IILNMFAKINQAGQTIMMVTHSLRAASFAKRILFIKDGIVYHEIYRSQAESQSEFMERIS QAQFMLKRGEQ >gi|311092479|gb|AEKJ01000001.1| GENE 91 98402 - 99319 526 305 aa, chain - ## HITS:1 COG:SA2417 KEGG:ns NR:ns ## COG: SA2417 COG0642 # Protein_GI_number: 15928210 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 7 299 3 295 295 196 36.0 7e-50 MEKIKKFVKTEVKICVAVFIVLLIFFFVFLFANLDFSLFYLSLEIVTFCLLIYLFICWVT FKKKENLQEQVNQLLIENRQLKNTIDIERKDLEEYFLLWVHQIKTPITVSDLILQKEKTP YTCQLKEQMFYIREYTNMAINYMKLKDRQADMDIAEVEIDKLLKSLLRKYSGLFIDKNIS LDYQPIDTKIITDARWATILIEQILANALKYTNSGKITLSFDRDKNALKVKDTGIGIKSE DINKIFDRGYSGFNGRINEKSSGIGLYLVKKIAILLNIKIEVCSTVNVGSEFIICFPKQS YNFVR >gi|311092479|gb|AEKJ01000001.1| GENE 92 99324 - 99992 662 222 aa, chain - ## HITS:1 COG:SA2418 KEGG:ns NR:ns ## COG: SA2418 COG0745 # Protein_GI_number: 15928211 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 219 1 219 221 197 47.0 1e-50 MKILIVEDEATLASLLEEELVQWGYLSKKASNFNDILAEVTDFKPDLVLMDVSLPFYNGF YWTEKIRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYD YKVGSDSIMYGDLKLNLSVAHLEGKNFVLELTRTELLILEILFNFKNKIAKREDIINYCW QGDAFIDDNTLAVNIARLRKKLKTVGYDELIQTKKGIGYYLK >gi|311092479|gb|AEKJ01000001.1| GENE 93 100092 - 101384 1457 430 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 41 362 19 349 419 154 31.0 3e-37 MNFKKKLLLLATSALAMLTLSACSKNSSSTDGKVATNITKKTTVVFWHSMTGASEKCMKQ YAAEFEKKHPNIHIKLENQGNYADLQSKINATLQSPKNLPTITQAYPGWLYDAAKLNKLV NLKPYIENSQIGWGSVAKSDIKDKLLLGAQIGGKQYGIPFNKSSEVLFYNKDVFDKYNLK VPRNMSELAQCAKTIYKKSNHALVGAGVDELANYYILSMKEQGIDFDKNIDMTCPESKKA LNWYIKGLKEGYLQIASANGYLSTDFGHQKVAMFISTCASEAYVKMGMGKDKFNYGVAPR PSKYNVQQGTDIYMFNKGTAEQKSAAFMFIKFMLSKRNQLKLAHATGYMPVLNSILKSDD YKCSKDSKVAGILDKTTANIYNLKISKNENAAYFQLKSSMQAILLAAKKGDSVVPVIKAN QLKLAHCWKQ >gi|311092479|gb|AEKJ01000001.1| GENE 94 101793 - 102227 212 144 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312871962|ref|ZP_07732044.1| ## NR: gi|312871962|ref|ZP_07732044.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 1 144 1 144 144 243 100.0 4e-63 KPAGVVTSKDDPLVQKANPAGVVISKGEPLLQKANPAGVVISKGEPLVQETKPAGVVTSK GDPLVELTKADHATELSHLTELLEKKVPSIKQKQLSQQISSDVHINAKKLPQLGADCRIL VYLVSFMSIFIIGSSKYVINKDKK Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:23:11 2011 Seq name: gi|311092478|gb|AEKJ01000002.1| Lactobacillus iners LEAF 2062A-h1 contig00085, whole genome shotgun sequence Length of sequence - 1774 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 112 - 1646 99.0 # AY958899 [D:1..1547] # 16S ribosomal RNA # uncultured bacterium # Bacteria; environmental samples. Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:23:20 2011 Seq name: gi|311092449|gb|AEKJ01000003.1| Lactobacillus iners LEAF 2062A-h1 contig00022, whole genome shotgun sequence Length of sequence - 30033 bp Number of predicted genes - 28, with homology - 28 Number of transcription units - 10, operones - 6 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 173 - 214 4.3 1 1 Tu 1 . - CDS 231 - 1604 1208 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 1702 - 1761 8.9 + Prom 1704 - 1763 9.1 2 2 Op 1 . + CDS 1934 - 4528 3473 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 4543 - 4603 8.2 + Prom 4590 - 4649 7.3 3 2 Op 2 . + CDS 4694 - 5893 1307 ## COG0282 Acetate kinase + Term 5908 - 5966 11.0 - Term 5905 - 5945 7.1 4 3 Tu 1 . - CDS 5951 - 6940 949 ## COG1087 UDP-glucose 4-epimerase - Prom 7017 - 7076 10.7 + Prom 7013 - 7072 9.9 5 4 Op 1 10/0.000 + CDS 7142 - 8197 1150 ## COG3839 ABC-type sugar transport systems, ATPase components 6 4 Op 2 38/0.000 + CDS 8197 - 9060 658 ## COG1175 ABC-type sugar transport systems, permease components 7 4 Op 3 . + CDS 9062 - 9880 858 ## COG0395 ABC-type sugar transport system, permease component 8 4 Op 4 . + CDS 9864 - 11153 1473 ## FI9785_1574 hypothetical protein 9 4 Op 5 . + CDS 11192 - 12481 1745 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 12486 - 12530 7.2 + Prom 12802 - 12861 3.7 10 5 Tu 1 . + CDS 12987 - 13211 281 ## gi|309803906|ref|ZP_07697990.1| hypothetical protein HMPREF9214_0166 + Term 13277 - 13335 -0.4 11 6 Op 1 . - CDS 13218 - 13733 356 ## LGAS_1299 hypothetical protein 12 6 Op 2 . - CDS 13733 - 14596 1093 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 14647 - 14706 7.4 + Prom 14583 - 14642 6.8 13 7 Op 1 . + CDS 14684 - 15379 770 ## COG0692 Uracil DNA glycosylase 14 7 Op 2 . + CDS 15431 - 16411 1093 ## COG0280 Phosphotransacetylase 15 7 Op 3 . + CDS 16408 - 16884 472 ## COG0802 Predicted ATPase or kinase + Term 16895 - 16936 1.1 - Term 16883 - 16922 -0.1 16 8 Tu 1 . - CDS 16962 - 17495 525 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases - Prom 17525 - 17584 6.4 + Prom 17526 - 17585 6.7 17 9 Op 1 3/0.000 + CDS 17609 - 18523 1100 ## COG0812 UDP-N-acetylmuramate dehydrogenase + Term 18527 - 18567 2.4 18 9 Op 2 30/0.000 + CDS 18578 - 19684 1132 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 19 9 Op 3 36/0.000 + CDS 19671 - 20483 870 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 20 9 Op 4 25/0.000 + CDS 20480 - 21280 690 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 21 9 Op 5 . + CDS 21277 - 22350 1002 ## COG0687 Spermidine/putrescine-binding periplasmic protein 22 9 Op 6 7/0.000 + CDS 22389 - 23231 931 ## COG1624 Uncharacterized conserved protein 23 9 Op 7 6/0.000 + CDS 23228 - 24196 1137 ## COG4856 Uncharacterized protein conserved in bacteria 24 9 Op 8 5/0.000 + CDS 24220 - 25572 1937 ## COG1109 Phosphomannomutase + Prom 25638 - 25697 5.7 25 9 Op 9 . + CDS 25763 - 27574 2029 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 27588 - 27641 13.5 + Prom 27598 - 27657 6.6 26 10 Op 1 . + CDS 27681 - 29204 1317 ## LCRIS_01774 hypothetical protein 27 10 Op 2 . + CDS 29220 - 29618 205 ## Ldb0661 CrcB protein 28 10 Op 3 . + CDS 29618 - 29968 430 ## COG0239 Integral membrane protein possibly involved in chromosome condensation + Term 29985 - 30024 1.5 Predicted protein(s) >gi|311092449|gb|AEKJ01000003.1| GENE 1 231 - 1604 1208 457 aa, chain - ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 13 454 14 454 458 358 44.0 1e-98 MKQKKSHSSKDISMKRSLTNTHIQLIALGGTIGTGLFLGVGNSIELAGPAVILIYTLVGF FLFLLMRALGELILSDLNKNTYIDFITQYLGKVIGTVTGYLYWFSWLSLGMAELTALGLY FRYWWHDLPLWLPGSITLIILLMINLISAKVFGNMEFSFAIIKILTIVAFVLLVFYLLIT NGSTKLYGAISFSNLFKDGGFFAKGANGFFSGFQMVIFSFIGVELIGLTAAEAQDPKKTI VKAINELPVRIILFYVLAILAILLVIPWKQVAINDSPFVQALGATGIKNAACIINFVVIS AAISSTNTFIYSGGRLLFSLNYHGQSNFAKCMGQLNKRQLPENALLFSTLLIGIAPIMNL FLENAFHFIAATSTSMFLIIWSIMIWAHIRYRKQTPEQQLHNFRMPLYPYTDYLVLGFFI TMIGLLLWVPKDRIPMISALVIFSILILSIKFIKKIK >gi|311092449|gb|AEKJ01000003.1| GENE 2 1934 - 4528 3473 864 aa, chain + ## HITS:1 COG:lin1675_1 KEGG:ns NR:ns ## COG: lin1675_1 COG1012 # Protein_GI_number: 16800743 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Listeria innocua # 5 457 3 455 455 513 54.0 1e-145 MAKEIASATKKEQIDVQAMIDSYVVQAHVALDKMANFSQEQVDKICEAIAKVGEQNSYLL AKMAVEETGRGIVEDKTIKNMFASENIWNSLRHEKTVGIISEDPERQLIKIAEPVGVIAG VTPVTNPTSTVIFKSMIALKTRNTIIFGFHPQAQKCCVKTAELIREAAIKAGAPDNCIQW IEYPSIEATNALMTHPNIQTILATGGPGMVKAAYSSGKPALGVGPGNGPAYIEKTANYQR AAYDIILSKTFDNGMVCASENSVVIDKDIYDKVKKEFEAWNCYFLNKEEIKKFETTFIDP RRGTVAGPIAGKSAYEIGKLCGVDVPEDTKVIIAEYSGVGKEYPLSAEKLSPVFTMYKVS GADEAFKICKDLLSYGGRGHTVGIHTEDKELIKKFALAMSACRILVNTPAALGGIGDLYN NMLPSMTLGTGSYGANSMSHNISAADLLNIKTVAMRRDNMQWIKVPKKTYFEHNAANYLK HMPDVEKFFIVTDETVAGKYANQITDIISQRLGKKSYEVFQAVKEHPTTDVISDGVHRMN IFKPDAIVALGGGSVMDAAKIMRLFYENPDMTLEDSYQKFIDIRKRVVRFPKTNMVQLVC IPTTSGTGSEVSPFAIIKDTQTGIKHTLCDYSLNPDVAIVDDNFVETLPAKLVANSGMEA LAHAMESYVSTMATDFTRGWSMEAIKLIFANLEKSYKGDQAARSKMHNASTLAGMAYANA FLGVGHAIAHTLGSTFNIPSGLSDAITMPYVIKFNAQRPRKLPIRPHYSVFRADKDYAEI ARSLGIQGKNDQELVEGLINKFVELAKSINMTLNLKDNGVSEADFNNKVEQLAVEAYGDQ NIVTNPSAPLIKQIEQLMKKIYVG >gi|311092449|gb|AEKJ01000003.1| GENE 3 4694 - 5893 1307 399 aa, chain + ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 396 1 395 395 416 52.0 1e-116 MKKILAINSGSSSFKYKLFNYPSEEVVAQGQAQRIGLAGATFSLKLADGSKYESEIKIPD HKTAIQLLLTWLPKYNVINDLKEIAGIGHRVVAGGEIFSESALIDKEKLQQIYDLSDYAP LHNPYEADGIRDFMQLLPGVPQVAVFDTSFHHTLDPVHYLYSLPYKYYEKYRARKYGAHG TSVRYVSHRAAELLNKPLNELKMIVCHLGNGASITAIKDGKSYDTSMGFSPVAGITMSTR SGDIDPSVLQYVMKKENISDFNKMINILNNKSGILGISDYSPDMRDIRKKAAAGDVKAKL AKDIFVNRIIKYIGSYYVDMGGLDALVFTAGIGENESLYRQAIVDKLSVLGLKIDEKANS VNGEKVISAVDSKAKILIIPTNEELVIARDVVRLAQINK >gi|311092449|gb|AEKJ01000003.1| GENE 4 5951 - 6940 949 329 aa, chain - ## HITS:1 COG:L0024 KEGG:ns NR:ns ## COG: L0024 COG1087 # Protein_GI_number: 15673961 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Lactococcus lactis # 1 327 1 326 326 392 54.0 1e-109 MNILVIGGAGYIGSHAVRKLLDSDYHVVVLDNLITGHRKAIDPRAKFYQVDLLNTFLVSK ILRNEKIDAVMHFAAYSLVSESVQNPLLYYQNNITGMISLLNAMNDAKVKYLIFSSSAAT YGIPEKLPITEEAPLKPINPYGETKMMMEKMMLWADKANNIKSIALRYFNVAGATSDGTI GEDHRTESHLIPNILKCADSHDKIFTIYGNDYQTLDGTNVRDYVEVEDLIDAHILALKHL IKTNLSDVFNLGTTHGYSNLEILECAKRITATDIPYKFGPRRGGDPDSLVADSTKARTIL GWQPKHENIDNIIASAWKWHQKHPNGYED >gi|311092449|gb|AEKJ01000003.1| GENE 5 7142 - 8197 1150 351 aa, chain + ## HITS:1 COG:PH0022 KEGG:ns NR:ns ## COG: PH0022 COG3839 # Protein_GI_number: 14589983 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Pyrococcus horikoshii # 7 349 25 370 373 263 42.0 4e-70 MVYENGYQAISDISFTVKKGELVCLLGPSGCGKTTTLNMVAGLLNPTGGDILVDGKSVLN VAPKDRNIGYVFQNYALYPHMTVLQNVMFPMTVGKNKKSKEEAKQIAERFMRLTHIEEYA NQKPGKLSGGQQQRVSIARALVQQPKILLMDEPLSNLDARLRLKIREEIRALVKKVGITT LFVTHDQEEALSIGDKIILFNEGVIQQDAASYEIYLNPANQFVANFIGNPVVDNFNVEVS DGKVKGDGFEIPLSAFDSDRFKKNITDGVYTLSLRPENVFPVDNQADGFFTCKIDDIELI GRERILKFTINGLGQRSLVKVEANVEPGDEICFGLNLDRAFIFDNNGERIY >gi|311092449|gb|AEKJ01000003.1| GENE 6 8197 - 9060 658 287 aa, chain + ## HITS:1 COG:lin0218 KEGG:ns NR:ns ## COG: lin0218 COG1175 # Protein_GI_number: 16799295 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 10 284 15 288 292 159 37.0 5e-39 MENNQKKAWLFLLPAIISVTIFSIWPIIRAFIISFQGGPLICLNFNGIENYKYIFADTDF WNSLINTAIYAFMTVPIALAIALALAWFVFSKIKHQSFFEAMFFMPYVTSTIATGIVFRY IFNGKYGLLDFVLKMLHLPAPDWLDDPSMSLISLIIFGIWSSLAFNIVILIGALRNIDPN YYVLADMYGANESEKFWRITIPQLFPTLAFLLTVNLIGAFKVYTQVFALFNGSAGQGNSA ITSVFYIYNKFQVANTPGVAMAATVCLFLFILFITCLQRKLMKRVNS >gi|311092449|gb|AEKJ01000003.1| GENE 7 9062 - 9880 858 272 aa, chain + ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 54 271 60 277 277 164 41.0 1e-40 MKKIKTVFIYIFVTFFAIITVFPFIYMIFGGLMTYEETTRIPPTFVPGSFKISNYLAVFN QAPFARYFFNTFVTATTTTVVSLFTSILGAFAMANLKFKGKGLIKIILISLLMVPGEAII FTNYTTIMSMGLINTYIGLVIPFLTSIFYMYYLQSYFKSITPTVYKAAMIDGASDWEYIW RILVPMSKSGLITVALLSFISGWNAFLWPLLVTNESDMRLLNNGLAAFATEAGSQTQLQL AAATLIVLPILIVYFVFRKQIIRGVVNHEFKA >gi|311092449|gb|AEKJ01000003.1| GENE 8 9864 - 11153 1473 429 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1574 NR:ns ## KEGG: FI9785_1574 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 428 1 432 433 591 65.0 1e-167 MNLKHKTKVTFYNGLTTIGGPMIEVAYNDSHVLFDLGEVFKPDLELADESFQTLIDNQLI GDVPDFYDYHLTGKKLSDSHWKDSAAYISHVHLDHSKALNLLDESVKLYTGPITASMLPV LNKDGNYLLPAAGKPKNYTRPIIAAELNVPIKVGDITLEIVPSDHDAYGATGLIIKTPDK KIAYTGDIRLHGYHPEWVEAFMHKGHGCDMLIIESTALSWPNENHSEEFTGPKNEDELID RIVKYQIDNPKRQITFNTYISNVERILRIIKDSPRKVVLSAKRAEFLKLSIGVDVAYYYL PGEEIIPILRSDLEVDYNTLLADESEFLWQAVADFDKLKSGSLYIHSNAEPLGSFDPAYQ PFVDTLEQHQVEVVMLRCSGHASASALEKIIRGFEPNVLVPVHSMHPELLENPCGSRLLP ERNQVFTFE >gi|311092449|gb|AEKJ01000003.1| GENE 9 11192 - 12481 1745 429 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 41 366 19 354 419 174 32.0 2e-43 MKFTKKLATLAVTALAVVSLTACSNKSSNSSAKIPTKISKKTTVVFWHGMVGGQEKALKN MAKEFEAKNPKIHIKLENQGKYSDLQAKINSTLQSPKNLPTISQAYPGWLLVAAQAKKLV DMKPYITNSKIGWGSVTKSDIRADLLKGAQIKGVQYGIPFNKSIEVLLYNKDLLKKYGVK VPKNMAELKKAAKVIYKKSDHKVVGAGFDSLSNYYALGMKEKGHDFNNKIDFTSSDSKSI IDFYANGIKDGYFQTAGSAGYLSGDFSNQKLAMYVGSSAGECFVKMGVGKKFEYGVAPRP SEYNIAQGTDIYMFDSASADQKAAAFMFIKFLLTKENQLAWADKTGYIPVTNTVISSEAY KESKKTKMPPILTKAMANLYSVPVVKNSNAAYAAVNTELQAVFAQAKKHKDWSENIKKGQ HKIDSAWKQ >gi|311092449|gb|AEKJ01000003.1| GENE 10 12987 - 13211 281 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309803906|ref|ZP_07697990.1| ## NR: gi|309803906|ref|ZP_07697990.1| hypothetical protein HMPREF9214_0166 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9211_1410 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0333 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_1267 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0325 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9216_1336 [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9214_0166 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9211_1410 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0333 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_1336 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9218_0325 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_1267 [Lactobacillus iners LEAF 3008A-a] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 74 37 110 110 145 100.0 8e-34 MKKELGDKCEISEHSLRKSVKQLYDSIYKWLDHGCLRGVDNFIDDIQNIADYFEFMSSVV DVKPLWLKSLQPKK >gi|311092449|gb|AEKJ01000003.1| GENE 11 13218 - 13733 356 171 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1299 NR:ns ## KEGG: LGAS_1299 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 161 1 161 171 90 32.0 3e-17 MLYQIHLVNNIFQNQFEVTNQYHEISYFICGCLNTLSQMIILKTKNNEEIGRLYHDKKCP NSKYYIKIKDNAPINITTVNLGYKEVLFAAHLCYWAYGNVKNQQFYCYKGIKKIATIFIA IKSNDITISCDIKDNIDPTYILLTAILITKLHVSTLHLPNLKILTNPQLQA >gi|311092449|gb|AEKJ01000003.1| GENE 12 13733 - 14596 1093 287 aa, chain - ## HITS:1 COG:SA0517 KEGG:ns NR:ns ## COG: SA0517 COG0561 # Protein_GI_number: 15926237 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 284 1 284 289 173 38.0 4e-43 MIKLIASDMDGTLLNEKMQISAENIKAIKYAQKKGVEFLIATGRSKLESAKLLANAGIQV GYINLNGAMLYNTEGDLVFEQDIPTEKSKEIIEILNESGYYFEIVSADNVYSNSKLERIT NVSNLLVDLNQNLDFKHAVPLSSGSEQIMGISFVDNYSNLLNLPNFKVMKFLAFKPDGAT FDQVSKKLLQLGDLVITSSSNTNIEINHKNAQKGIALMHYAKMKGISTNQVMAIGDNLND KSMIERAGVSVAMGNAVDEIKALAKHITLKNTEDGVAHAIYEFLGDN >gi|311092449|gb|AEKJ01000003.1| GENE 13 14684 - 15379 770 231 aa, chain + ## HITS:1 COG:BH3850 KEGG:ns NR:ns ## COG: BH3850 COG0692 # Protein_GI_number: 15616412 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus halodurans # 7 222 6 222 224 252 56.0 4e-67 MKKFIGNDWDQILDPIFESDKYRQLHEFIKHEYSTKVIYPDMYHIYTAFKLTPFYKTKVV ILGQDPYHNPQQATGMSFSVNPGVALPPSLRNIYKELHNDVGAKIVNHGYLKKWADQGVL LLNAVLTVPYGKANGHQGKGWEFVTDQAIKSLSDRGGVVFILWGKFAQNKIPLIDVNKNF ILKSAHPSPLSASYGFFGSHPFSKCNELLKKLGESPIDWQLPESVAPNDVV >gi|311092449|gb|AEKJ01000003.1| GENE 14 15431 - 16411 1093 326 aa, chain + ## HITS:1 COG:L107797 KEGG:ns NR:ns ## COG: L107797 COG0280 # Protein_GI_number: 15673641 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Lactococcus lactis # 1 323 1 326 326 366 57.0 1e-101 MKVFDILKQKALSCEQSIVFPEGNDLRVLEAVCRLKSERMVNPILLGDVDEIKKLALQNH LNLADIRIINPLTYNQIDEMIDALVKRRNGKNTAQEAAEMLKHGSYFGTMLVYLHKAAGM VSGAAHSTADTVRPALQIIKTLPGMSRVSGAMIMERETEKYIFSDCAINIDPDAQTLAEI AYQSYLTAKMIGLDPKVAMLSFSTKGSAKGPMIDKVIQATKLVHENHPEVKIDGELQFDA AFVANVAAKKAPNSEVAGKANVFVFPELQSGNIGYKIAQRLGNFTAVGPVLQGLAAPIND LSRGCSANDVYLAGILTAVQAIEAKK >gi|311092449|gb|AEKJ01000003.1| GENE 15 16408 - 16884 472 158 aa, chain + ## HITS:1 COG:lin2184 KEGG:ns NR:ns ## COG: lin2184 COG0802 # Protein_GI_number: 16801249 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Listeria innocua # 2 143 4 141 153 138 46.0 4e-33 MKLLITSDHEMQELGQILGTHAVAGNILLLTGDLGAGKTTLTKGIAKALGIKRPVKSPTY TIVREYKEGKLPLFHMDMYRLKDGDLSSIDLNDYFEQNGVIVIEWPEFVMDNLPTDYLKI NIARIDDTWDSTKRSLVLTSSGENSNIWLNKIVPDIQK >gi|311092449|gb|AEKJ01000003.1| GENE 16 16962 - 17495 525 177 aa, chain - ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 177 1 176 306 122 38.0 4e-28 MNFTAMDFETANRHYDSACSLALVLVRDNKIIDSFYTVINPQMPFDKNNIKIHGITANDV KDAPTMDEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTLATSRA LIPNLKNYRLDTVSNQLNIDLWHHHNALSDSEACAEILIKQNQQFGDEQIKKFIKYI >gi|311092449|gb|AEKJ01000003.1| GENE 17 17609 - 18523 1100 304 aa, chain + ## HITS:1 COG:SPy1101 KEGG:ns NR:ns ## COG: SPy1101 COG0812 # Protein_GI_number: 15675084 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 4 298 1 293 295 317 54.0 2e-86 MNLMTLRQQGIDIQQNIPLSRFTFTKTGGPAEFLAFPKNLPELELLVKSVRQENMQLTVI GNASNLIIKDGGIDGLVIILTKMNQIIANESDCTITAQAGATIINTSNAARDAGLTGLEF AAGIPGSVGGAVFMNAGAYDGETENVIKSVKVLTRDGVFKTYTHDEMQFGYRHSIVQDTG DIVVSATFGLKAGEKKAIADRMKYLNDLRRAKQPLEYPSCGSVFKRPKGHFVGPMIIEAG LQGTRIGGAEDSKKHAGFIINVGGATATDYLNLIHLIQKVIKEKFDVDLQTEVRIIGKEK RIDD >gi|311092449|gb|AEKJ01000003.1| GENE 18 18578 - 19684 1132 368 aa, chain + ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 4 360 5 361 364 454 63.0 1e-127 MSNIIRLEHVRKEYDDGFVALDDVNLSIESGKFYSLVGPSGSGKTTILRIIAGFSEVSAG KVFFDNQDITHLDAAKRQINTVFQNYALFPHMNVFENVAFGLKIKKKEKSEIIRSVKAAL HMVQLDDFVNREISELSGGQQQRVAIARALVNKPQVLLLDESLSALDKRLRKDMQFELRE IQKKLGITFIFVTHDQEEALAMSDEIFVLNQGTIQQSGTPVDIYDEPVNDFVARFIGDSN ILNGRMIEDYLVEFNNRRFECADAGIKPGEKVEVVLRPEDLDIVEVAAGKLSATVESQLF LGDHFEIKATDTDNNEWLIHSTNASKIGKEIGLYFDPEDIHVMRFGESEAEFDKRLESYE GEDDDEEK >gi|311092449|gb|AEKJ01000003.1| GENE 19 19671 - 20483 870 270 aa, chain + ## HITS:1 COG:SPy1103 KEGG:ns NR:ns ## COG: SPy1103 COG1176 # Protein_GI_number: 15675086 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Streptococcus pyogenes M1 GAS # 1 263 1 264 264 283 60.0 2e-76 MKKNKLLFLIPYSLWIILFVIAPLVMITLNAFSSKYGLTINNFKQFFINGTFLRMTLNSF WYAFLITFITLLLSYPTAYILSRMKNQQFWLLLIILPTWINLLLKAYAFIGIFGKHGLLN NFLGLVGISPVNILFTNFAFVVVAAYIEIPFMVLPIYNAICDIDPAVVKAAKDLGASNFQ TFIRILWPLSKSGVEAGVQAVFIPSLSLFMLTRLIGGNRVITLGTAIEEYFMSTMNWPMG STIGVILIILMIAVMISTSSDSKKKKEVKL >gi|311092449|gb|AEKJ01000003.1| GENE 20 20480 - 21280 690 266 aa, chain + ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 1 252 1 252 268 278 63.0 9e-75 MKKFKWDKFYLTFILLTLYIPIFYLIIYSFSSGNNMDNFKNFTFDHYWDLINDNRLLAIF IETIILALLSSLFATIVGTLGAIAINNIKNRNRKKLLLTLNNVLMVSPDVIIGASFLILF TAMGISLGMGSVLLSHIAFSIPIVVLMVLPRLKEFDKSLVDAASDLGANSWQIFSKILLP AITPGILSGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGINLEINALSTVMFI FVLILVFIYYLITCKKGHTKGKAGTL >gi|311092449|gb|AEKJ01000003.1| GENE 21 21277 - 22350 1002 357 aa, chain + ## HITS:1 COG:SP1386 KEGG:ns NR:ns ## COG: SP1386 COG0687 # Protein_GI_number: 15901240 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Streptococcus pneumoniae TIGR4 # 1 355 1 354 356 395 55.0 1e-110 MKKLVLAAITIILVCLGLQILADKLNNSGVSSGSKDLIIYNWGDYIDPKLLKKFEKQTGY HVIYETFDSNESMYTKIKQGGTAYDICIPSDYMVSKMKESHLLKKINLRNISNIKNIDPQ FMNQSFDYGNNYSIPYFWGTLGIIYNDKFVKMGEIKHWNDLWKSKFKHQILLVDSARDIM GLSLISMKNSVNSQDSLKLKLAKTKLDALGANVKAIIADELKMYMIRNEASIGVTWSGEA RTMLNENPHLHYVVPSEGSNLWLDNIVIPKTAKNQAGAYAFINFMLDPKNAAQNAKYIGY ATPNMLAKKLLPDSIKKDRQFYPATSTMKHLQVFKNLRSEKIQEYNDLFLEFKMYAH >gi|311092449|gb|AEKJ01000003.1| GENE 22 22389 - 23231 931 280 aa, chain + ## HITS:1 COG:lin2225 KEGG:ns NR:ns ## COG: lin2225 COG1624 # Protein_GI_number: 16801290 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 278 2 272 273 283 53.0 2e-76 MVWDIYHIFTWQHLMNLIDILIVWFLIYRLIMIIKGTKAVQLAKGIALIIVIRLVAGFLH VVILSYLVDQILSWSVIGMIIIFQPEIRRGLEHLGRSPLLGGNVVAKKSSEIMIEELDKA IQYMSKRRIGALITLQQKTGLEDYIETGIPINATITGALLINIFIPNTPLHDGAVIIKDN KVSVAAAYLPLSDNNTIPKNLGTRHRAAVGISEVTDAITIVVSEETGGVTITRNSNLMLD LTREEYLKYLRAQLVPETDDQPTNFQRMISKIWNWGSSIR >gi|311092449|gb|AEKJ01000003.1| GENE 23 23228 - 24196 1137 322 aa, chain + ## HITS:1 COG:BS_ybbR KEGG:ns NR:ns ## COG: BS_ybbR COG4856 # Protein_GI_number: 16077244 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 313 1 317 483 117 28.0 2e-26 MNKFFDSKLFYKLLALIITILLTVYVSYNQVGFIPRGQRTRTLQTVTKTETLKLPLQISV NTDKYYVTGYPEKVKVNITGPSALVVSAINTKNFRAFIDLSELKIGKHQVPIRVSGLSNQ LSYKISPKKIVVDIQERKTRTLPIKIRYNSDVLSKEYFVYSPYCKPSMVEVTGEKSEVNH ISKIIANVDIRKKTIHSFDSEVMLVAVDASGKQLNVVIQPETTHVYIPIRKSKKRVRLNI TSHNAASNRMYSLTSSIKKVTLYGAASTLKDIVQLDVDVNLAGIVHNTSKKVRLKLPKGV VKADPSDIWVKIEKADISAIKN >gi|311092449|gb|AEKJ01000003.1| GENE 24 24220 - 25572 1937 450 aa, chain + ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 1 450 1 447 448 528 60.0 1e-150 MLKYFGTDGVRGVANAGLTPEMAFKLGRDGGYILTKHKSAGERARVLVSRDTRISGQMLE YALISGLLSVGIEVLELGVITTPGLSYLVRAQGADAGVQISASHNPVEDNGIKFFGSDGL KLSDEKEAEIEALIDSKEDTLPRPSAQGLGTVTSYHEGSSKYLQFIENTLPEQLDGIKVV VDGANGASSALISRLFADMGVDFTTIATHPDGLNINDHVGATHTELLQQEVVKQGAQLGL AFDGDADRCIAVDEKGNEVDGDHIMYVIGCYLADHGRLKNDTIVTTVMSNLGFTKALERR GIKNIRTQVGDRYVSEEMRANGYNLGGEQSGHVIISDYHNTGDGMLTGLHLLYVMKDTGK SLSELLSDFKSYPQKLVNVPVRNKQDWKKSTKISAAIAEVEKTLGDDGRIFVRPSGTQEL IRVMTEAPTQELADKCCQDVVDVVKAEMGI >gi|311092449|gb|AEKJ01000003.1| GENE 25 25763 - 27574 2029 603 aa, chain + ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 603 1 602 602 688 58.0 0 MCGIVGIIGKSARDVVLNGLKKLEYRGYDSAGIYLNDLNGHEYLTKAVGRIKNLEDKLSD NEQGLVGIGHTRWATHGKPSIANSHPHYSSDKRFYLVHNGVIENYAELKEKYLSDVSFNS DTDTEVVVQLIAKIAKEKCLSGFLAFKEALKLINGSYAFLLVDNKEPDHIFIAKNKSPMM LGIGDGFNIIASDAISVLDQTKLFIDLQDGDVADVTASAINIEDIAGNHIERKPYLVNID PNSASKGTYEFYMLKEIDEQPSVMRRLSKEYFNDDADVKVDANIVQSVAQSDRIYILAAG TSYHAGLVGKNIIEKYTDIPVEVGIASEFGYHFPKLSKKPFFIFLSQSGETADSRVVLKQ VNQLGLPSLTITNVAGSTLSREATYTMLLKAGPEIAVASTKAYTAQVAVQAILAKAVGEY LKIAAAIDFDLKRQLALVAEGMQEIVDGKEKINSLAKKYLATTRNAFYIGRGVDYAVALE GALKLKEVSYIQTEGFAAAELKHGTIALIEKGVPVVTLINDPATADLTRGNIQEVESRGA NVITIVAKKFAKATDDIILPDVDYYLSPLVTVVPAQLLAYYASKNKGLDVDKPRNLAKSV TVE >gi|311092449|gb|AEKJ01000003.1| GENE 26 27681 - 29204 1317 507 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01774 NR:ns ## KEGG: LCRIS_01774 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 19 500 12 494 502 286 36.0 1e-75 MLQENSKKNQFFIRLLQCFILIQPLLDTYFFYANSKLKKLFVFSIPTLLRFGLIALIVFL FWKFSISESRSRYFKYICVYALILVFYSVGHLWYFSTFPAISKVMIIKEAFYIVRMLLPV IMIYIIYHTEFSIQQFMVVIQGLVALISGSIVISNLICKSMCSYDNHKLIVANIFSWFSR SDFTFREIASKGWFYFANTISAILVLLVPLIIYLLLTRFNFINSILYIITGMAMIMLGTR VGTLGFVAINILSILVYLVHIFILRNAKFSIKPLILIAIFVGAYCATIPYSPMSRRNQST ETVAKKSTKHHTKRLIKKLDKALSQKETKAEKKEYIIAFVKKYHNRFNIPKKYIKYSIPV ENNYQFWNKIYHWPSIKRMDNRLLEETMVKEYMSQKSVGFVKIFGISYLAMTQLFHLERD FVSQKDSMGFIGMILLVGIYPIMIVYSIYKWLRYSQLRTMLNSFLIMANGLLILVAYNSG NVMDFLTASLIASFTFGFMLLQQKKVK >gi|311092449|gb|AEKJ01000003.1| GENE 27 29220 - 29618 205 132 aa, chain + ## HITS:1 COG:no KEGG:Ldb0661 NR:ns ## KEGG: Ldb0661 # Name: crcB1 # Def: CrcB protein # Organism: L.delbrueckii # Pathway: not_defined # 10 118 3 113 128 66 38.0 3e-10 MVKKIIQVKSLKIYLVIAILAAIGSILRSCLAKEINGVLLVNILGCIALGFINLFLKDYN YSNLSLAKGLTVGFIGSFTTFSSYNLEIFKLINHKQYLAGLTYFVLFAALGLFFTWIGML LEKLVVKVGKNR >gi|311092449|gb|AEKJ01000003.1| GENE 28 29618 - 29968 430 116 aa, chain + ## HITS:1 COG:SP1294 KEGG:ns NR:ns ## COG: SP1294 COG0239 # Protein_GI_number: 15901154 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Streptococcus pneumoniae TIGR4 # 13 114 13 109 109 62 47.0 2e-10 MAWLMVLIGGICGALVRYKINIYTSNFYLGTFPLATLCVNLAGSFLMGILFAKVCAGYSY ALLGTGFLGGLTTFSTMNFELLDALRNKQYLIFISYFVLTYLGGFTLLLIGYILAK Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:23:48 2011 Seq name: gi|311092448|gb|AEKJ01000004.1| Lactobacillus iners LEAF 2062A-h1 contig00055, whole genome shotgun sequence Length of sequence - 1444 bp Number of predicted genes - 2, with homology - 0 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 45 - 134 46.8 # Ser GCT 0 0 - TRNA 137 - 210 91.8 # Ile GAT 0 0 - TRNA 217 - 287 61.2 # Gly TCC 0 0 - TRNA 301 - 373 78.2 # Phe GAA 0 0 - TRNA 380 - 452 62.0 # Asp GTC 0 0 - TRNA 455 - 528 77.0 # Met CAT 0 0 - TRNA 564 - 637 89.6 # Met CAT 0 0 - TRNA 651 - 724 73.7 # Met CAT 0 0 - TRNA 752 - 825 86.0 # Pro TGG 0 0 - TRNA 829 - 905 78.4 # Arg ACG 0 0 - TRNA 915 - 1000 68.7 # Leu TAA 0 0 - TRNA 1013 - 1084 79.2 # Gly GCC 0 0 - TRNA 1089 - 1162 92.0 # Thr TGT 0 0 - TRNA 1195 - 1276 59.0 # Leu TAG 0 0 2 2 Tu 1 . - CDS 1233 - 1442 336 ## - TRNA 1292 - 1364 84.3 # Lys TTT 0 0 - TRNA 1367 - 1439 86.4 # Val TAC 0 0 Predicted protein(s) >gi|311092448|gb|AEKJ01000004.1| GENE 1 855 - 1049 401 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVGVAGSNPVFRLSLLCRGGGTGRRTGLKILRLVTTVPVRFRSSAYNDAPLAQLDRVSDY ESEG >gi|311092448|gb|AEKJ01000004.1| GENE 2 1233 - 1442 336 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no NGGLAQLGEHLPYKQEVTGSSPVSSIESLAQLVEHLTFNQRVGSSSLPRLIRPKFCGCGG IGRRARFRF Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:24:01 2011 Seq name: gi|311092439|gb|AEKJ01000005.1| Lactobacillus iners LEAF 2062A-h1 contig00005, whole genome shotgun sequence Length of sequence - 7222 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 1, operones - 1 average op.length - 8.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 32/0.000 + CDS 1 - 447 473 ## COG0779 Uncharacterized protein conserved in bacteria 2 1 Op 2 22/0.000 + CDS 467 - 1555 676 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 3 1 Op 3 8/0.000 + CDS 1601 - 1876 368 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 4 1 Op 4 10/0.000 + CDS 1878 - 2183 181 ## PROTEIN SUPPORTED gi|15895077|ref|NP_348426.1| hypothetical protein CAC1801 5 1 Op 5 32/0.000 + CDS 2188 - 4824 3523 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 6 1 Op 6 26/0.000 + CDS 4858 - 5214 495 ## COG0858 Ribosome-binding factor A 7 1 Op 7 12/0.000 + CDS 5275 - 6168 941 ## COG0130 Pseudouridine synthase 8 1 Op 8 . + CDS 6186 - 7115 494 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 Predicted protein(s) >gi|311092439|gb|AEKJ01000005.1| GENE 1 1 - 447 473 148 aa, chain + ## HITS:1 COG:BS_ylxS KEGG:ns NR:ns ## COG: BS_ylxS COG0779 # Protein_GI_number: 16078722 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 4 148 15 156 156 119 44.0 1e-27 SYYPLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPD PLPDPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKII LEIKIKTQQKKIAIPRNMIANIRFAIKF >gi|311092439|gb|AEKJ01000005.1| GENE 2 467 - 1555 676 362 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 344 9 347 537 265 42 1e-70 MSKELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQA VKTVVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLRE AERAHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKV LVTKVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSS DPNIDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEA NDDKSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQVEFVDEDSSANGEVES AD >gi|311092439|gb|AEKJ01000005.1| GENE 3 1601 - 1876 368 91 aa, chain + ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 87 8 94 108 86 51.0 1e-17 MRKDLITNTMMPKKELVRIVVDKEKNIFVDPTGKKAGRGAYVSLEPEKIQQAKKRRVLEN SLGIKISDEFYDELYAYVEHQRARKELFGDK >gi|311092439|gb|AEKJ01000005.1| GENE 4 1878 - 2183 181 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15895077|ref|NP_348426.1| hypothetical protein CAC1801 [Clostridium acetobutylicum ATCC 824] # 1 99 1 100 102 74 36 2e-13 MNNKALNMLGLAQKAGKMVGGYDATNIAILNKKAMLVFIASDISNNTKEKILFVCQKNNI NLCRQFSTAELSHIMGKNRKILAVTDSGFAKAIMKKINEGE >gi|311092439|gb|AEKJ01000005.1| GENE 5 2188 - 4824 3523 878 aa, chain + ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 292 878 196 782 782 729 65.0 0 MTRIRLYELAKELGIENKVIVEKARELGFDVKSHMSSLTDDQINKIRELYKNKSDKKRPN KSKIKVSVGALRRTNGNEDNNKKKKKADLTKNTNSPKEKANNPKPAARDLLNKLQKKQRQ ESVALEEQVKRSKKQWHEEQIKKVDATENKMPVEGAEAVRARVKVAKKVAGPKIIKLSPA RQKVDNETKNDQVKHSNAKRDFRPRQTKATKSMDISSVISDSPVPPEENRKLRNKEYGKT GRKKQRDDDADFERSEQSDKARRRKNRKVKGQQQVDLIKKQPTQRKDRPLPEILVFEEGM NAQDLGKLLHREPAEIVKKLFMLGIMTNQNQSLSKDTIELLAAEYGIESKEKVHEDISDI DNLYEHEMEVSKKSQNLVKRPPVVTIMGHVDHGKTTLLDRLRNTNVSAHEAGGITQKIGA YQVKLDDRLITFLDTPGHAAFSNMRARGAEVTDIVVLVVAADDGVMPQTVEAIDHAKSAG VPIIVAVNKIDKPGANPDHVMEQLMKYGLVPEDWGGDTIFVKISAKSGENVDDLLQMILL QADMMELQADPNQKAIGTVIEARLSKGRGPVADVLVQQGTLNIGDPIVIGDTFGRVRVMT NDKGRRVKKATPSTPVEITGLSDVPEAADKLVVFEDEKTARSVGEQRARNSLEKQRENTQ HVTLDNLFDTMKKENMKEVGIVLKADVQGSTEALQQSLEKIDVEGVRVNIIHAGVGAINE SDVTLASASNAFIIGFNVRPTATARSQADNEGLDIRLYNIIYKAIDDVEAAMKGMLEPTY EEKVVGSLTVRETWKVSKVGTIAGALVDSGYITKDSGVRVIRDGIVKYDGKVASLKRFKD DVKEVKQGFECGITIENFNDIKIDDQLEAYEMQEVPVK >gi|311092439|gb|AEKJ01000005.1| GENE 6 4858 - 5214 495 118 aa, chain + ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 3 114 6 117 118 97 41.0 5e-21 MKHRIGRVEGEILRELTKILRKEISDPRLREISITAVECTNDFSYATIYYSLLTDNSVRE DEVSQGLEKAKGLMRHLLSNNLTLFKVPELIFKRDNSVAYGSKMDQLIKQVQEQDKKR >gi|311092439|gb|AEKJ01000005.1| GENE 7 5275 - 6168 941 297 aa, chain + ## HITS:1 COG:SP1212 KEGG:ns NR:ns ## COG: SP1212 COG0130 # Protein_GI_number: 15901075 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 290 1 288 292 233 43.0 3e-61 MLNGIIVLNKPRGVTSSDCVYKLRKLLKIKKIGHAGTLDPEVNGVLPIAVGQATKLIEKM HEKDKKYIGVGLLGFATDSYDVTGKKIAEKKIITPFSDEEIQSGMKKLVGDISQMPPIYS AVKVNGKRLYEYARENIEVQRPMRDVTVKSYNLVNTSTYDYEKQQQTFDFSVTCSKGTYV RSLVNDLGAILDVPAVMVKLTRIASSGYNITDAVTLEDISRQIDQPHFWLQPIDSFFDNV EHFVLNSEQYDRVRNGAALKIKASSNEVALVYSGKIKAIYEKKLNVYKPQLMLLQND >gi|311092439|gb|AEKJ01000005.1| GENE 8 6186 - 7115 494 309 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 21 309 20 315 317 194 34 1e-49 METILLDNPIDSRKICSNAVVVLGFFDGVHIAHQKIIFKARKIADDKQVPLVVLTFDKHP KELYLDDKNFKYIDTLSEKTAKMRKFNVDLLVVMKFNESMCRLKPADFIDNVILMFNPSV VVVGYDYTYGPQKIANIQTLLTYSKGKFDLVIEPEATFKGEKIGSTEIKEAISHGNVKLA ADLLGCPYSMSGVVVHGFHRGHMLGFPTANLCINCKKILPYNGVYATQTLIKGKLYNSMT SVGYNDTFNNSKKTIETYIFDFCEDIYDEKIILYWYEFIRDNIKFNDINSLINQLNIDKT NIQRYFDKK Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:24:02 2011 Seq name: gi|311092437|gb|AEKJ01000006.1| Lactobacillus iners LEAF 2062A-h1 contig00090, whole genome shotgun sequence Length of sequence - 628 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 626 213 ## gi|312872036|ref|ZP_07732113.1| conserved hypothetical protein Predicted protein(s) >gi|311092437|gb|AEKJ01000006.1| GENE 1 2 - 626 213 208 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312872036|ref|ZP_07732113.1| ## NR: gi|312872036|ref|ZP_07732113.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 32 208 1 177 178 245 99.0 1e-63 YYTSTGQVDEHGKFKVGVPTGVSLTKDQEITVTQTETNKKPTSKTVKVVPSQADGLKKPT EKVWVDNDKKLSPSEQKSVKDKVEELNKKDNQKPTVTVGDNGETTVVFPDGSQATIPGNE LVQEKRAKVRNQRQSLHIRKVRKLLVQERKVQRFSVAFPGGKTATGQVDEHGKFKVGVPT GVSLTKDQEITVTQTETNKKPTSKTVKV Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:24:15 2011 Seq name: gi|311092429|gb|AEKJ01000007.1| Lactobacillus iners LEAF 2062A-h1 contig00002, whole genome shotgun sequence Length of sequence - 10432 bp Number of predicted genes - 11, with homology - 9 Number of transcription units - 7, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 277 - 336 7.0 1 1 Tu 1 . + CDS 504 - 722 57 ## + Term 864 - 910 -0.8 - Term 406 - 453 9.3 2 2 Tu 1 . - CDS 603 - 899 71 ## gi|309804925|ref|ZP_07698986.1| conserved domain protein - Prom 1143 - 1202 8.6 3 3 Op 1 . - CDS 1266 - 2876 176 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 4 3 Op 2 . - CDS 2908 - 3678 641 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 5 3 Op 3 . - CDS 3696 - 4454 494 ## Lbuc_0158 hypothetical protein 6 3 Op 4 3/0.000 - CDS 4444 - 5334 1175 ## COG1131 ABC-type multidrug transport system, ATPase component 7 3 Op 5 . - CDS 5336 - 8005 2038 ## COG0515 Serine/threonine protein kinase - Prom 8047 - 8106 6.8 - Term 8042 - 8099 3.2 8 4 Tu 1 . - CDS 8111 - 8239 91 ## - Prom 8317 - 8376 8.2 + Prom 8604 - 8663 5.7 9 5 Tu 1 . + CDS 8697 - 8900 241 ## gi|259501188|ref|ZP_05744090.1| conserved hypothetical protein + Prom 8955 - 9014 4.1 10 6 Tu 1 . + CDS 9113 - 9367 273 ## LGG_02944 integrase 11 7 Tu 1 . - CDS 9698 - 10213 407 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 - Prom 10236 - 10295 8.3 Predicted protein(s) >gi|311092429|gb|AEKJ01000007.1| GENE 1 504 - 722 57 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYTSYYFQKLKLQKLNYYSIFNTFHVPICRSSYSSQLELRHQYFQPFQDALLGIAGIMQV TCMPNIYKVDSA >gi|311092429|gb|AEKJ01000007.1| GENE 2 603 - 899 71 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804925|ref|ZP_07698986.1| ## NR: gi|309804925|ref|ZP_07698986.1| conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners LactinV 03V1-b] conserved domain protein [Lactobacillus iners LEAF 2052A-d] conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners LactinV 03V1-b] conserved domain protein [Lactobacillus iners LEAF 2052A-d] # 1 98 1 98 98 182 100.0 1e-44 MHSKITELELLYNKMFKSAFVYSQIQEIVQNDKTALDINGQILHFTDYVTIKEDIDQLLS GRINFVDIGHTCDLHNSCYSQQCILKRLKVLMPKFKLT >gi|311092429|gb|AEKJ01000007.1| GENE 3 1266 - 2876 176 536 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 320 530 1 217 223 72 28 1e-12 MIKLIHFESKGKIVLAFIFMLIASFDGVVLSYIVSEAGTLSSSSNNTSVLNFGIKSLIGL SLVYIGKFLYTISVASIIKDLNIYLKQNFFWNQFSDKKNIPNSSGIISNLSNDFKLIENK YFQGIFSLTSDILLCIVSLIYMLKFNIYISLLFLSMSFLPMIVPFAFSKKLKLAGNNWSK ANEIYINHIKDYLQGFNVLRTYSIYKEIYQKSLKNLKFLEQKNYDLMKTQAVAGLLSSLC AGVSFIVPFVVGCFVIINTNTLSFSALMGIFLLNDRVVGPLTSVASDFNEIKTTDELRKK LFIFENRVSVASDLHKTTPVNDLQSLKFNNVTYEINDKITLTLNKTLVAPFKVLICGESG SGKTTLLRLIKGDILPANGDIEAKDIYGKDMIIFQDVAYIFQTPYIFDTTLLDNLTLFQS KEFTQEKIIRVLKKVSLYDELGGKNSLKYMCGTMGKNLSGGQIQRLEIARALLRDKKVLL VDEATANLDKNNSKKIRDLLFNTPVPVIEVAHHYNLNDKRYTDKFELKNGKLIPIG >gi|311092429|gb|AEKJ01000007.1| GENE 4 2908 - 3678 641 256 aa, chain - ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 255 1 255 256 60 27.0 2e-09 MYTELKQELYKLGHRKLPWWIISFLILFMIFMGLAMGRDYSKLLVMTCYDSSQAIMLILV VVGSTIFSMEFQNKTILMVMYRASNKGAVYLAKFITIFIYNVFLHLVAMLVTIFFNTVPI LVNPVAWSTTYKYQQSLFINMIATTGVDIVTSTLIISLICLTSCLINSDTIVIVVNALII FMGSTLSVNLLNANIGPIKLIRWNPLNMLNLTTQYYNYATYHLTSMLSSTQLLIGTLCYT AIFTILGYLIFRRKSF >gi|311092429|gb|AEKJ01000007.1| GENE 5 3696 - 4454 494 252 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0158 NR:ns ## KEGG: Lbuc_0158 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 43 252 49 258 258 90 27.0 6e-17 MKIDLLHEFYKFAHRRIPLYGILILLGLMLYTIGTSYKISPYLLTQGFGAGQWAIIIIIA LSVDMISMEYRDHTMATLMYKTSNKSALYTAKFIVLVIYSILLLACGVLFSFIIKGILVG SRYYWLENYHGHSLINALLLNVGGTLIYLLFIVAFSLVLILLIKNNATVIMIGLAIGFLG ADLSSLAMVAFPSLKAILAWNPLNMINIISQLSNNDMQKITYLTNSQLIIANLIYAALFF GIGLSIFKKRAI >gi|311092429|gb|AEKJ01000007.1| GENE 6 4444 - 5334 1175 296 aa, chain - ## HITS:1 COG:SA2302 KEGG:ns NR:ns ## COG: SA2302 COG1131 # Protein_GI_number: 15928093 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 212 3 211 231 188 49.0 9e-48 MLDVKNINIYYGHKEIIRDASFTISSGEIVGLIGPNGAGKTTIMKTLLGLTHFTGKLSFN GQPITLKDHAALQTVGALIENPAIYPFLTGRDNLKLYSQDSTDTAKLITRLGMDGYIDRK AKDYSVGMKQKLGIALALLNNPKLVILDEPMNGLDIEATISIRKLIHEYAAQGTAFLISS HVLSELQKVMTSVIIINHGKITMNSPMSRFTQEISSESKLQTTAMKQTTELLQQAKISFN QKGDYLIVNQENIATIQQLLFENKIWINYLAPAGLTFEQKIVNVLQTKQGGDNNEN >gi|311092429|gb|AEKJ01000007.1| GENE 7 5336 - 8005 2038 889 aa, chain - ## HITS:1 COG:SP1344 KEGG:ns NR:ns ## COG: SP1344 COG0515 # Protein_GI_number: 15901198 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Streptococcus pneumoniae TIGR4 # 10 867 3 867 869 195 24.0 4e-49 MINGTDYVKYIKNKSIPFYSHSNNKKDDSITFHSASYNKSNWNSIITDDWHYMMHNSNDL PDQGWKIHISANLEDAQEVLIKVSELLITTKVSFKFIPDFLTLELSYSKNADRIEAGKFI TIYPKNDTEFCELLDPLKRITDQFKEGPYILNDRPWKQSNVYYRYGGFRAMTAIKDGRTI YVIRTPDGDFIEDKRVPYFSKPDFVNEPIYIQENNTYPNPETFAKLDSLNIKEALHFSNA GGVYVGKYKGHDVVIKEGRPFIGIDQKQCDGFTRIKAEYKTLMKLKYVAGVVDPIGYEKI WKHNYLIEEKIPGETLGEYMAVNFPFPNNSDVTLYKHNALQIIHKLVNLVKEIHQKGFAI VDFQPENIMIDTDKRHGTINVRLIDFESAGPLNNRYNPNLVTQDYTSFQSKTFKDADWYT LNRIARSIFLPVESTMFYSPELEKRQNKNIKFKFGKDVVDYLTKVQNLCAKHTTIYRQPA FYDGYVETPQESINSNNLAQNIAALEKGITQNINYDLKGLIYGDIKQYNDSLSWYAINYG TMGTIMALQRNNSNILRTSAFRNWLNKVEERIDSITKQDSSFNVGLFDGLGGIALILYEL GHKDMAEELIHRCNSTHNALNISMYSGLTGLGLVNLVLYLSTNKNNYMRVAKQIADTIIS RYHSGEFDNQEEYEGRLGLIKGWAGPVIFLWKLGTLINDLHYRSEAIIILDKIVATGIIN TEQGSALSDKSKGMVRILPYLDTGFAGLSLVLMDINLDAPNIIRKKYSNIWETIQKDVGS FCTYQCCLFSGTAGLAMYSNTVKLNFNKTNSFDIYLQALNNFMLSTNRKNMLVPGQFGVK CSMDYETGAAGVLIALLNIENQINWLPLLANNPLNIFNSKPTTQLKVMK >gi|311092429|gb|AEKJ01000007.1| GENE 8 8111 - 8239 91 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKNPVVNLQKTPASKISSSVRMRNSGFSFNCRGQSTLSINCR >gi|311092429|gb|AEKJ01000007.1| GENE 9 8697 - 8900 241 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259501188|ref|ZP_05744090.1| ## NR: gi|259501188|ref|ZP_05744090.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] integrase [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners DSM 13335] # 1 62 1 57 255 73 61.0 7e-12 MHFTQFLNEFEGINVYYSTVYQLLSQAEVDSPLKFKRLLVETALRQNIGLSILKLLKPKP SKPLISA >gi|311092429|gb|AEKJ01000007.1| GENE 10 9113 - 9367 273 84 aa, chain + ## HITS:1 COG:no KEGG:LGG_02944 NR:ns ## KEGG: LGG_02944 # Name: tnp # Def: integrase # Organism: L.rhamnosus # Pathway: not_defined # 4 61 254 311 478 68 53.0 8e-11 MDVLTRLGYACKQLGTEIIITSVSQVKGMVERANQTFQGRLKQEFRIAQINDIETANDYL LNTFVPDFNENNNLVCFNNHTKCL >gi|311092429|gb|AEKJ01000007.1| GENE 11 9698 - 10213 407 171 aa, chain - ## HITS:1 COG:RSc0334 KEGG:ns NR:ns ## COG: RSc0334 COG2110 # Protein_GI_number: 17545053 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Ralstonia solanacearum # 1 169 6 170 171 181 53.0 5e-46 MNLRVVKEDITRLKVDAIVNAANKTLLGGGGVDGAIHQAAGPELKEVCRKLNGCMTGEAK ITEAFKLPAKYIIHTVGPIYPFHTISENKKLLSSCYINSLNIAKAYKLKSIAFSCISTGV YKYPKKIAAMTAIETCRKWIIDENYDIEIIFCVFDSDNFNIYNDIINASFN Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:25:12 2011 Seq name: gi|311092338|gb|AEKJ01000008.1| Lactobacillus iners LEAF 2062A-h1 contig00057, whole genome shotgun sequence Length of sequence - 92741 bp Number of predicted genes - 90, with homology - 90 Number of transcription units - 40, operones - 22 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 68 - 109 4.2 1 1 Op 1 7/0.000 - CDS 127 - 879 299 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 2 1 Op 2 41/0.000 - CDS 891 - 1658 222 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 3 1 Op 3 38/0.000 - CDS 1658 - 2551 755 ## COG0581 ABC-type phosphate transport system, permease component 4 1 Op 4 39/0.000 - CDS 2554 - 3468 1089 ## COG0573 ABC-type phosphate transport system, permease component 5 1 Op 5 . - CDS 3471 - 4340 1146 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 4394 - 4453 7.9 + Prom 4375 - 4434 10.7 6 2 Tu 1 . + CDS 4487 - 5203 597 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Term 4953 - 4995 1.1 7 3 Op 1 36/0.000 - CDS 5206 - 5883 286 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 8 3 Op 2 1/0.000 - CDS 5906 - 6961 813 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 9 3 Op 3 . - CDS 6965 - 7489 332 ## COG1309 Transcriptional regulator - Prom 7520 - 7579 9.7 - Term 7562 - 7611 4.5 10 4 Op 1 . - CDS 7632 - 8117 698 ## COG2190 Phosphotransferase system IIA components 11 4 Op 2 . - CDS 8138 - 8647 487 ## LJ0638 hypothetical protein 12 4 Op 3 3/0.000 - CDS 8625 - 9431 687 ## COG1737 Transcriptional regulators - Prom 9469 - 9528 7.9 13 4 Op 4 2/0.000 - CDS 9767 - 11389 1850 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 11411 - 11470 5.7 - Term 11398 - 11443 5.9 14 4 Op 5 . - CDS 11473 - 12816 1569 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases - Prom 13054 - 13113 6.0 - Term 13169 - 13219 6.2 15 5 Tu 1 . - CDS 13220 - 14530 1571 ## COG0172 Seryl-tRNA synthetase - Prom 14625 - 14684 4.3 - Term 14613 - 14650 -0.1 16 6 Op 1 . - CDS 14775 - 15272 243 ## PROTEIN SUPPORTED gi|116514699|ref|YP_813605.1| acetyltransferase 17 6 Op 2 . - CDS 15276 - 15875 696 ## COG0398 Uncharacterized conserved protein - Prom 15898 - 15957 7.5 + Prom 15790 - 15849 8.9 18 7 Tu 1 . + CDS 16020 - 16799 929 ## COG0657 Esterase/lipase + Term 16802 - 16851 5.1 19 8 Op 1 . - CDS 16849 - 17691 766 ## LGAS_1627 hypothetical protein 20 8 Op 2 . - CDS 17713 - 18621 506 ## LJ0665 hypothetical protein - Prom 18736 - 18795 8.0 + Prom 18607 - 18666 7.5 21 9 Tu 1 . + CDS 18795 - 19712 1154 ## COG2971 Predicted N-acetylglucosamine kinase + Term 19739 - 19783 2.3 - Term 19725 - 19771 7.2 22 10 Op 1 . - CDS 19776 - 20687 876 ## LJ0652 hypothetical protein 23 10 Op 2 . - CDS 20707 - 22002 1397 ## COG2195 Di- and tripeptidases - Prom 22031 - 22090 7.2 - Term 22083 - 22129 9.1 24 11 Op 1 . - CDS 22144 - 22704 780 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 25 11 Op 2 . - CDS 22717 - 23526 816 ## COG1072 Panthothenate kinase - Prom 23580 - 23639 3.6 26 12 Tu 1 . - CDS 23647 - 25956 2327 ## COG3973 Superfamily I DNA and RNA helicases - Prom 25995 - 26054 9.5 - Term 26073 - 26117 1.9 27 13 Op 1 51/0.000 - CDS 26121 - 28211 3019 ## COG0480 Translation elongation factors (GTPases) 28 13 Op 2 56/0.000 - CDS 28244 - 28714 762 ## PROTEIN SUPPORTED gi|42518426|ref|NP_964356.1| 30S ribosomal protein S7 29 13 Op 3 . - CDS 28730 - 29137 676 ## PROTEIN SUPPORTED gi|42518425|ref|NP_964355.1| 30S ribosomal protein S12 - Prom 29207 - 29266 8.8 + Prom 29214 - 29273 8.0 30 14 Tu 1 . + CDS 29311 - 29820 329 ## gi|309803340|ref|ZP_07697435.1| hypothetical protein HMPREF9214_0897 31 15 Op 1 . - CDS 29812 - 30477 547 ## FMG_1337 hypothetical protein 32 15 Op 2 . - CDS 30543 - 31733 1256 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 31785 - 31844 8.8 - Term 31825 - 31872 1.2 33 16 Op 1 . - CDS 31889 - 32674 195 ## PROTEIN SUPPORTED gi|145223395|ref|YP_001134073.1| NLP/P60 protein 34 16 Op 2 . - CDS 32736 - 33293 364 ## COG0194 Guanylate kinase - Prom 33338 - 33397 4.7 + Prom 33281 - 33340 9.0 35 17 Tu 1 . + CDS 33386 - 33673 393 ## LAC30SC_09460 hypothetical protein + Prom 33689 - 33748 5.5 36 18 Tu 1 . + CDS 33781 - 33954 152 ## gi|309807294|ref|ZP_07701263.1| conserved domain protein + Prom 34079 - 34138 7.0 37 19 Op 1 . + CDS 34289 - 34501 346 ## FI9785_p9785L.22 hypothetical protein 38 19 Op 2 . + CDS 34508 - 36079 1004 ## COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 39 19 Op 3 . + CDS 36100 - 37671 1362 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Term 37958 - 37994 7.5 40 20 Op 1 . - CDS 38071 - 38790 1016 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 41 20 Op 2 . - CDS 38849 - 40114 1718 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 40164 - 40223 3.6 42 21 Op 1 5/0.000 - CDS 40246 - 41868 2041 ## COG0504 CTP synthase (UTP-ammonia lyase) - Term 41887 - 41917 1.0 43 21 Op 2 . - CDS 41976 - 42476 735 ## COG3343 DNA-directed RNA polymerase, delta subunit 44 21 Op 3 . - CDS 42541 - 42972 454 ## FI9785_297 hypothetical protein - Prom 43000 - 43059 4.7 + Prom 42987 - 43046 7.7 45 22 Tu 1 . + CDS 43112 - 44488 1631 ## COG1078 HD superfamily phosphohydrolases - Term 44457 - 44504 11.6 46 23 Tu 1 . - CDS 44517 - 45209 1026 ## COG0588 Phosphoglycerate mutase 1 - Prom 45238 - 45297 9.0 + Prom 45309 - 45368 8.0 47 24 Op 1 . + CDS 45398 - 45841 430 ## COG2461 Uncharacterized conserved protein 48 24 Op 2 . + CDS 45909 - 46709 518 ## LGAS_0165 hypothetical protein 49 25 Tu 1 . - CDS 46746 - 47564 800 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) - Prom 47592 - 47651 8.2 - TRNA 47650 - 47722 64.5 # Thr GGT 0 0 - Term 47732 - 47780 10.2 50 26 Tu 1 . - CDS 47781 - 49046 621 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 49212 - 49271 4.1 51 27 Op 1 . - CDS 49275 - 49907 432 ## COG0344 Predicted membrane protein 52 27 Op 2 . - CDS 49895 - 50983 848 ## COG1316 Transcriptional regulator 53 27 Op 3 . - CDS 51019 - 51654 632 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) - Prom 51697 - 51756 8.9 + Prom 51627 - 51686 8.8 54 28 Tu 1 . + CDS 51737 - 52288 441 ## COG1335 Amidases related to nicotinamidase + Term 52305 - 52348 11.2 - Term 52293 - 52336 11.2 55 29 Op 1 . - CDS 52341 - 53117 886 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria 56 29 Op 2 4/0.000 - CDS 53129 - 54229 1482 ## COG0012 Predicted GTPase, probable translation factor 57 29 Op 3 1/0.000 - CDS 54242 - 54493 384 ## COG4481 Uncharacterized protein conserved in bacteria 58 29 Op 4 25/0.000 - CDS 54508 - 55386 1118 ## COG1475 Predicted transcriptional regulators 59 29 Op 5 25/0.000 - CDS 55370 - 56143 758 ## COG1192 ATPases involved in chromosome partitioning 60 29 Op 6 4/0.000 - CDS 56146 - 56991 1049 ## COG1475 Predicted transcriptional regulators 61 29 Op 7 . - CDS 57012 - 57731 708 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division - Prom 57803 - 57862 6.0 62 30 Tu 1 . + CDS 57885 - 58424 430 ## LJ0553 hypothetical protein + Term 58431 - 58469 -0.2 - Term 58418 - 58456 -0.2 63 31 Op 1 . - CDS 58459 - 59244 1037 ## COG2365 Protein tyrosine/serine phosphatase 64 31 Op 2 1/0.000 - CDS 59262 - 59822 678 ## COG0431 Predicted flavoprotein 65 31 Op 3 . - CDS 59816 - 60373 496 ## COG0431 Predicted flavoprotein 66 31 Op 4 . - CDS 60386 - 60607 256 ## gi|309808183|ref|ZP_07702093.1| conserved hypothetical protein - Prom 60659 - 60718 9.1 + Prom 60586 - 60645 10.1 67 32 Op 1 . + CDS 60705 - 62117 1357 ## COG4690 Dipeptidase 68 32 Op 2 . + CDS 62141 - 63520 1233 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 63547 - 63583 8.2 - Term 63526 - 63579 15.1 69 33 Op 1 20/0.000 - CDS 63599 - 64468 1102 ## COG3833 ABC-type maltose transport systems, permease component 70 33 Op 2 19/0.000 - CDS 64474 - 65823 1103 ## COG1175 ABC-type sugar transport systems, permease components 71 33 Op 3 1/0.000 - CDS 65886 - 67100 1767 ## COG2182 Maltose-binding periplasmic proteins/domains - Prom 67126 - 67185 2.7 72 33 Op 4 3/0.000 - CDS 67204 - 68307 1499 ## COG3839 ABC-type sugar transport systems, ATPase components 73 33 Op 5 11/0.000 - CDS 68327 - 68989 842 ## COG0637 Predicted phosphatase/phosphohexomutase 74 33 Op 6 3/0.000 - CDS 68974 - 71247 2347 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) - Prom 71285 - 71344 4.0 75 33 Op 7 7/0.000 - CDS 71355 - 73103 1552 ## COG0366 Glycosidases 76 33 Op 8 3/0.000 - CDS 73118 - 74779 1476 ## COG0366 Glycosidases - Prom 74862 - 74921 8.2 77 33 Op 9 . - CDS 74945 - 75898 787 ## COG1609 Transcriptional regulators - Prom 75928 - 75987 6.8 78 33 Op 10 . - CDS 75992 - 76768 862 ## COG2365 Protein tyrosine/serine phosphatase - Prom 77007 - 77066 9.8 + Prom 76788 - 76847 8.6 79 34 Op 1 . + CDS 76936 - 77607 723 ## COG3442 Predicted glutamine amidotransferase 80 34 Op 2 . + CDS 77597 - 78982 1311 ## COG0531 Amino acid transporters + Term 78996 - 79049 2.6 + Prom 79047 - 79106 9.0 81 35 Tu 1 . + CDS 79184 - 80119 862 ## Ldb1900 hypothetical protein + Term 80129 - 80166 2.3 - Term 80188 - 80231 3.1 82 36 Tu 1 . - CDS 80274 - 82988 2507 ## COG1511 Predicted membrane protein - Prom 83076 - 83135 10.3 - Term 83122 - 83163 1.2 83 37 Tu 1 . - CDS 83172 - 84083 637 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 84128 - 84187 4.8 + Prom 84461 - 84520 2.9 84 38 Tu 1 . + CDS 84547 - 85557 1266 ## COG2502 Asparagine synthetase A + Term 85633 - 85692 3.3 85 39 Op 1 . - CDS 85921 - 87534 1000 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 87712 - 87771 15.1 - Term 87698 - 87748 1.4 86 39 Op 2 . - CDS 87833 - 89215 1190 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 89262 - 89321 10.2 - Term 89386 - 89434 5.3 87 40 Op 1 4/0.000 - CDS 89439 - 89798 463 ## COG4687 Uncharacterized protein conserved in bacteria 88 40 Op 2 13/0.000 - CDS 89800 - 90729 1217 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 89 40 Op 3 13/0.000 - CDS 90754 - 91548 1059 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 90 40 Op 4 . - CDS 91576 - 92565 1195 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 92602 - 92661 7.9 Predicted protein(s) >gi|311092338|gb|AEKJ01000008.1| GENE 1 127 - 879 299 250 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 245 1 239 245 119 33 4e-26 MKIISIKDLSLKYDEFEVLHKISMDIEANAVTALIGASGCGKSSFLRCFNRMNDLIPNSK VTGNIKFKQYEIYANNIDLAFLRQKIGMVFQQPNAFSFSIYDNVAFGLKIQGINKKKILD ERVENALKEAAIWDEVKDKLSCNACSLSGGQQQRICIARALATNPEILLMDEPTSALDPI SAAKVEETILFLKKQHTIILVTHNIEQAKRVSDNLAFFMSGHLIEYGVSRDIFTQAKNKD TKDYLEGKWS >gi|311092338|gb|AEKJ01000008.1| GENE 2 891 - 1658 222 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 11 237 9 227 309 90 29 4e-17 MSNNLDTSYILQTSELSVSYGKTKVLKDISIDIYQNKITSLIGCSGSGKTTFLRSINRID DNITTVSGKIYFAGLEINNPKINVYELRKNVGMVFQQPNVFAKSIYENIAYALRYHGMSD KDEVYETVEKSLKQTSLWDEVKNNLAKCALELSGGQQQRLCISRAIALKPKLLLLDEPTS ALDPIATAKLEETIKDLKEKYSIIMVTHNMQQARRVSDYIAFFNMGSLIEYGSVDDIFLR PQISITKNYVSGKFG >gi|311092338|gb|AEKJ01000008.1| GENE 3 1658 - 2551 755 297 aa, chain - ## HITS:1 COG:SPy1243 KEGG:ns NR:ns ## COG: SPy1243 COG0581 # Protein_GI_number: 15675203 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 295 295 264 46.0 2e-70 MSNSFIDKIVKKIILLIVLLLLSFLLLFLTYIFGMGIQYLSLKSILSPSQITGSGGGIRD QLFNSVYMLLLTLIISLPLSIGSGIYLAEFAPKNKIVDFIQNMIDVLSYMPSIVVGLFIY LIIVIKFNIGFSILAGSLALTIFNLPILTANIKNAFCNISQAQRDAGKALGLSEWNLIKG ILLPQTIPTIIVAVVLSAGRIFGEAAALIYSSGQSAPLLNYANWNPFCMDSPLNIMRPAE TLSVYIWKINSEGLKPDAEKISFCSILILVGVILLFDLVAHFLGNYLHQKFIYGKKK >gi|311092338|gb|AEKJ01000008.1| GENE 4 2554 - 3468 1089 304 aa, chain - ## HITS:1 COG:lin2641 KEGG:ns NR:ns ## COG: lin2641 COG0573 # Protein_GI_number: 16801703 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 7 301 8 303 307 248 49.0 1e-65 MSDLHPKLLKTSKAINENRRGIVITAFCTMFIVITAISLIVFIAIKGLAIFIDNRASLLK FLISDVWQPGNTSNGRPLIGALAMIVGSFGVTLLALMLAIPFSLALSLFVTQYAKKRVKD ILQIVLDLFTGIPSVVYGFLGLILIVPVVRKIYGGTGFGLLSGAVVLAVMILPTITSIMI NAINGVPISMIQASLALGATRWQTIYKIILRFCLPGLLIGVIFGMARALGEAMAVQMVIG NTVLLPKGLATPTTTLTSQLTVQMGNTIFGTVQNNALWTLALFLLLISLVFNVLIRTLAK KGNY >gi|311092338|gb|AEKJ01000008.1| GENE 5 3471 - 4340 1146 289 aa, chain - ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 28 286 45 302 302 263 53.0 4e-70 MKIKTIKYLLFTLVMTCTLTACSQKQESLISVGSTALQPLVEEASVHYADKNHVRINVQG GGSGTGLNQVQAGTVTIGNSDIFAQQADGINANKLIDHRVAVVGIVPVINKKIGITNISM LQLREIFSGKINNWNQLGGPNQKIVVVNRAEGSGTRKTFELEVMKGQKMKLSQTQDSNGS VQKIISTTPGSISYLAFPYANKKKLQKLSINHVKPTSANVLTNKWVLWSYEHMYMNKKKQ PQAAKKFIEYIMSRKFQTSTVEKMGYISIHKMKVQKDANGKVTLIKNKG >gi|311092338|gb|AEKJ01000008.1| GENE 6 4487 - 5203 597 238 aa, chain + ## HITS:1 COG:TM1655 KEGG:ns NR:ns ## COG: TM1655 COG0745 # Protein_GI_number: 15644403 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Thermotoga maritima # 2 238 12 245 247 99 31.0 5e-21 MKTIILLSKDIVLFTGLNTLANQKQTSIYNALTIKKVIKHASDPDTIGIIIDLHHLHDED FFNNLDKIRHHFNGPIIILTKVFDAHSAKKMFKIKASVCLTSYNPDLILAQLISLIWLNE NPRKIVENQEDIHDYLLSEHKKINLDLRQYPPKLNGKILNLTSKEFKLLKFLFENQNHVL SREQLLDGVWEYEDEYNTTRIVDMHISNLRDKIEADPANPQLIKTVRGLGYMLKLPNQ >gi|311092338|gb|AEKJ01000008.1| GENE 7 5206 - 5883 286 225 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 3 201 4 199 223 114 35 1e-24 MSLVSLKNVNKIYGKGSSQIKSLDNINFAADAGQVVLIEGPSGSGKSTFLTILGALQKAT SGQVIISGEEITAMNSKQLDQLRLNKIGFILQSYALVPYLKIREQFVLANIIKKTNNMDQ LQLNNLLKQLQVNELLDKYPKELSGGQRQRIAIARALYTNPPIVLADEPTASLDSKCVTL VGQLFQQFAHQDGTLIVMVTHDQRLEQYADVIYRIVDGKMDKRTD >gi|311092338|gb|AEKJ01000008.1| GENE 8 5906 - 6961 813 351 aa, chain - ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 350 2 356 357 222 36.0 9e-58 MFLALKEIRYEKVRYGLITCIILLISYLIFILSALAFGLANENTQVIKEWQMQTIILNDN SNLNLNQSILTKQDLEKNKLTKQDASIGQVPIVVKKAHRKTVSSQLIAINREQYIFKTMS LVAGRKFNNKHEVVVDSLFNQYGYQIGDKIKFNGKNDSYKIVGFVKNAKLNIAPLVYGDF SLWKKIRPMAPEAQATAIVSQRKLNYHHKQAKNYSTKQFVLKLPGYVAQNTTFEMMITFL FIISLITIAIFLYIVTMHKLPSYAVLRAQGVSAKMLVKATVLQSFLLSVVGSMLGLVFTL LTLKAMPITVPMYLSSWMMVSVILGMIFVGLVGSLIPVRSILKVDPASAIN >gi|311092338|gb|AEKJ01000008.1| GENE 9 6965 - 7489 332 174 aa, chain - ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 124 1 112 189 64 29.0 1e-10 MVKKTFINLNSAKKKKIEQVMLDEFSNYALNQANVARIVKEAGIARGTFYTYFDDLEDAY LYVYNKAMLQIHDPIKMDKPEFDADLFYKMAYELVCNIEKSKYKKLLKKHMLVNESLLIH NFQLENQKAIHMDTKTWSAMVLTHETIKLALFDLEHKENYFRKLKQGLDCLRRV >gi|311092338|gb|AEKJ01000008.1| GENE 10 7632 - 8117 698 161 aa, chain - ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 11 156 4 149 151 132 45.0 2e-31 MFNFFKNKGLEVDAAVDGGLIPISEVNDDVFSTKMLGDGYAIKPISGDIHSPVEGDISTL FPTKHAIGIKTKEGLEILVHLGIDTVELNGAPFQMKIQKGDHVIAGQLLGTMDLKQVVDS GRDDSVIVVYTNMDLIESISPVQKGSVNSGDRVQTITFKKN >gi|311092338|gb|AEKJ01000008.1| GENE 11 8138 - 8647 487 169 aa, chain - ## HITS:1 COG:no KEGG:LJ0638 NR:ns ## KEGG: LJ0638 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 156 1 156 169 203 69.0 2e-51 MWTMTKNKVTSFCDQIMERLHLNTCSILKWYSIILFVAPLLYWGLLEFRLVMTQVSFVNM LHKHPAMAVSVIIAITDFLLGYYCWIKKDEIVTNRTRLRTFWILQCFCQLLVGNIICFLL SIFGLRALPSSKVKSTTVSYFKVTIIISTLLYALCILLLGLIGLQGLRG >gi|311092338|gb|AEKJ01000008.1| GENE 12 8625 - 9431 687 268 aa, chain - ## HITS:1 COG:SA2115 KEGG:ns NR:ns ## COG: SA2115 COG1737 # Protein_GI_number: 15927904 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 14 253 13 246 254 75 25.0 1e-13 MTDLKRRVWEKSGELSTSEKEIFRFLFSNSKLCSHLSLAKLAAKLYVSESSIFRLCKKIG LSGYSELRFELSDLAHERKINTVDIATEVENASQEVLNYYNTLDLEKLFLDIEHANTIYL YSTGWSQELIARYLLRELFIIGKNAVMLPSAISELKMVSKRATEGDMLFIISYSGDNVQI RDEISKIQLINNKIITVSFTTLRPAELVSLVDYSFFFRTLKFEKFWVEGDATIDSLSPAY TFVDLLIAKYYQWEKSKGELDNVDYDKE >gi|311092338|gb|AEKJ01000008.1| GENE 13 9767 - 11389 1850 540 aa, chain - ## HITS:1 COG:BS_glvC_1 KEGG:ns NR:ns ## COG: BS_glvC_1 COG1263 # Protein_GI_number: 16077887 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus subtilis # 1 449 1 445 452 483 53.0 1e-136 MMQKLQRFGAAMFVPVLLFSFAGIVVALGCLFNNATIFGSLASPTTGWYKVWDTISAGGW TVFNQECLLFVVGLPIGLANKSHGRAAMESLITYLTFNYFVGAMLSHWGAFFGVPNFNKI TITANATNGGLTQIAGIKTLDTSIIFSLIIAGIVVYLHNHYFDKKLPEWLGTFQGSTFVY ILGFFVMIPVAFLTCLIWPKVQLGINSLQHFIVGSGFVGIWIYSFLNRVLIPTGLHHLVY IPFQFGPAVVAGGLQPYWLKHITEYAASTKPLSQIASMEGFQLYGNEKVFLVPFICWAFY ATAKKNKKKQTSALLIPAALTSVLTGITEPIDFTYLFAAPILWVVYSVMAATMNTIMWCF GLRGLMSDGAIGIASMNWIPLWSNHWHVYVMQFIVGIVCGLLTYFIFKLMIEKFNYVTPG READNEDVKLINKKEYKEKMAQQKIAQQATGVAESDPYIARAQAYLELLGGSSNIEEISS CATRLRVTVKDPDKLGSDAQFKSNKAVNVVHHGKAIQVIVGLDVAQVLERMQALIEKNGN >gi|311092338|gb|AEKJ01000008.1| GENE 14 11473 - 12816 1569 447 aa, chain - ## HITS:1 COG:Z5177 KEGG:ns NR:ns ## COG: Z5177 COG1486 # Protein_GI_number: 15804281 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli O157:H7 EDL933 # 7 447 3 440 440 548 58.0 1e-156 MMKDNRKFSVVIAGGGSTFTPGFVLNLLKNQDRFPLRKIKFYDNDAERQKKIGDAVSIIM NERAPEIEFEYTTDPKEAFTDVDFVMGSIRVGKYHMRSLDEKIPLRYGVNGQETTGPGGM AYGLRSIPAIIQIIDWMEEYSPNAWMINYSNTIAIVAEACRRLRPHSKVINICDMPIDIM TRMAQICGLKDYHDLDFNYYGLNHFGWWKGVWDKKTGKDLMPELKKYVSKNGYWVGGDFD KNTEASWKETFKKAADCYALEPNTLPNTYMQYYYYPQYEVKNADPNRTRTDEIREYRQKI VFGECERIVKEGTAENNMWDRNETHSEYIVDICHAIAYNTGEKFLANIPNNGAISNMDPD SIVEVPCLFTSHGVEPISTGEAGIFQRGLMMEQQTCEKLVVDAYEQHSYEKMWEAFALNK TVPDALVAKKILDDMIPENKPYWPILK >gi|311092338|gb|AEKJ01000008.1| GENE 15 13220 - 14530 1571 436 aa, chain - ## HITS:1 COG:SP0411 KEGG:ns NR:ns ## COG: SP0411 COG0172 # Protein_GI_number: 15900330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 430 1 424 424 550 64.0 1e-156 MLDIKVIRENLDWAKKKLATRGIKPEELDELVAIDVKRREVLTKTETLKNKRNEVSAQIA QAKKNKENADDAIKEMREVGQEIKALDVEVSELTEKQKYILLRLPNFPDDSDPIGPDDSY NEEVRKWNEPTKFTFEPKAHWDLGTDLNILDWDAAAKVSGARFVYYKGAGALLERAVFNF FLDENVKAGYTEVIPPYLVNYDSMQGTGQFPKFTEDVYTIVDNDDPDKPRELTLIPTAEV PLVNYFRDKILDIKQLPINVTAMSPAFRSEAGSAGRDTRGLIRMHEFRKVEMVKICDEDS SWQELDKLTKNAEHLLQKLELPYHVVALSTGDASFTSAKTYDLEVWMPAQNQYREISSCS NCTDFQARRSLIRYRDEAGKLHLAHTLNGSGLAVGRTVAAILENYQNEDGTVNVPEALVP YMHGMTVIKPEPKFGE >gi|311092338|gb|AEKJ01000008.1| GENE 16 14775 - 15272 243 165 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116514699|ref|YP_813605.1| acetyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 3 147 5 143 164 98 40 1e-19 MSRIYLRKIIPSDVKTLYKWGQDPLYHNTACFEKMTSMAQAKVATDCYMARKYSYAIVLA ETKQMIGLIELYNHVPFNGAQPICEVGFLLQKDYWHQGLMKEAMDKIINFAFNKLELKQV WAVTFADNSNAQSFLEKYGFEYVKTVDTFIEEIFRKELYFVLTDR >gi|311092338|gb|AEKJ01000008.1| GENE 17 15276 - 15875 696 199 aa, chain - ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 7 197 10 201 201 148 41.0 6e-36 MSAKDSRKLINIITVISTILMILLGIYWYKMGILTDQVKMKEYLSDKQVIGPLIFVFIQI IQVVIPIIPGGVSLVAGVIFFGPLWGFIYNYVGIVIGSIIIFFLARFYGKPFILHLVSEE TYNKYMKWTVNQKKFNHIFAWCIIAPVAPDDILCMIAGLTEIKVSTYIMIIIFGKPWTIL AYSLGLVYGSKWFLKILGK >gi|311092338|gb|AEKJ01000008.1| GENE 18 16020 - 16799 929 259 aa, chain + ## HITS:1 COG:L141530 KEGG:ns NR:ns ## COG: L141530 COG0657 # Protein_GI_number: 15673289 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Lactococcus lactis # 19 257 15 253 257 82 28.0 1e-15 MVSIIKDIKYDDRNNLFTDIYFPEQTSTTNKILIFWHGGGWIKGSKEACQELGVRFAKAG FTTMIPEYRLASQSTFPGAHQDSKTFVEWLLNSQYVTMPRSKQPIYQIGASVGATMALFI AGQFGFDTVCWSAPLDFSEWIKNHKDTVASTDAASELNLTNPRQIKDSFYKFFTVSYAGG EDPSILQQMDAYNYDLDKLNRLLMINSEHELTPLDSVLKFAKTLAQQNKALNLILLPGDQ HAMGYADKYIDKSIEFLLH >gi|311092338|gb|AEKJ01000008.1| GENE 19 16849 - 17691 766 280 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1627 NR:ns ## KEGG: LGAS_1627 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 11 267 60 332 336 189 40.0 1e-46 MHENSENKKEKQQNDTVLLMVEWIKHNAVLVFVLGIVLMIITSIIAFMGWAVLVCLLMLL YFVCANEKIAEEYTVDRKLEEKVDVVGSSLVNSVENSRISNRYRRYRQSTREPRTWLQWG VIAMALICLVTIFYGPFASDALSVVQGHTISNTLLFAFNRFSALHYRLIAWVMWLFIVAI PITIIIITLKNIKHNREFAFVLSLLETIVLLIWLFELVFLNVGIKVGLGTITGSRLYRIQ TNIISFGVSSYLLIVASCITSVVTFKSWFSYIKDKNKNTK >gi|311092338|gb|AEKJ01000008.1| GENE 20 17713 - 18621 506 302 aa, chain - ## HITS:1 COG:no KEGG:LJ0665 NR:ns ## KEGG: LJ0665 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 294 1 306 314 138 32.0 2e-31 MKIKRILVAIAISFCSFILYITNVQHLKSMKLIVSKPKSVQLHNSSSSSLATKSQSEEDF IVAKNSDHQLIEPIKNNVDLMTPFQVAVQGLNFNKKASIYNKKNSLEVGNILKLFVLLAY HKALLEKNPKLTKPYKVMAGDVKGKGLIVNTSYAYPFLIQQMMYHNSNDAANILVKVLKL EYINKVAAELGAKSTKIINSFDQKDVGQTTTADMITIFTKLYRRQILTVNDCNLILRLLN TYPNKGLAAGIPGICHYISDDNASCCLVNTNGKVYIIAAIGGDKNRFNQLGKDVYNVIAM HK >gi|311092338|gb|AEKJ01000008.1| GENE 21 18795 - 19712 1154 305 aa, chain + ## HITS:1 COG:alr4655 KEGG:ns NR:ns ## COG: alr4655 COG2971 # Protein_GI_number: 17232147 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosamine kinase # Organism: Nostoc sp. PCC 7120 # 4 288 3 305 320 95 31.0 1e-19 MFKYMIGIDAGGTHSTAIAYDEQGKELGRAESGPGQINNDYNLGIKNITVAINELRNKID GDCIKILAGIAGLSVVGNAPEVAATISSMVGNIPTRAITDSLLALYNGLEGTDGALVIAG TGSVVNGRQNGSLITVGGYGSLLGDEGSGYAITKAALVTALSKWDQRQPSSLIDLFIKIW NLDNMNDAPAKFYTMTSPQVASYAVEIAKLADSGDAEARDIIQEQAHLLARDILMCLDRY QEPKPMRIALTGSVLSNNAMIRSFMEDEVKEQYPDAVFSVSNGENARGVIYDKSKDYRYF TSSKN >gi|311092338|gb|AEKJ01000008.1| GENE 22 19776 - 20687 876 303 aa, chain - ## HITS:1 COG:no KEGG:LJ0652 NR:ns ## KEGG: LJ0652 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 73 299 56 280 282 330 81.0 6e-89 MARRKKPQKRNDLSRSIFWLICIILAFTFWGTKRSAYHTHTDNYRTQFNKQVPSSSHRGN SPKINATSEIPAAKIAKSAYGGLDDSDYQKLAACNFKSGDAAYVYVNNNHSTLIKNAWKI NKVIYSNLDSLNRTSHSNTAFLESRNVANDSLRVRQFINPTGWHSNRQNAMRTQIYNRGH MIAYSVSAGIDQSGRYNPNNQSGDQNNIKNLFTQTAFSNQKIQTIFESKVRKALRMGQKV IFQATPIFRGNELMARGINLQAISVNGWLDFNVYIFNVQPGYTFDYATGRAKVARDFSVG WVK >gi|311092338|gb|AEKJ01000008.1| GENE 23 20707 - 22002 1397 431 aa, chain - ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 6 415 1 409 412 388 47.0 1e-107 MGEDAMNDIDTAYIEQKFVEYCKVNTRSDPNNNCVPTTKRQVELLMIIKNELQELGLKNI SYSAKDSYLVGLLPSNTATLTTAVGFVAHVDTADYNAENVQPQIYRNYDGEKIYLDPQKD RVLDPAEFPSLKKHIGETLITASGSTLLGADDKAGIAGLLGMLKFLKNHPNAEHGDIWVA FGPDEEIGQGAKRFDISRFPVEFAYTLDNGDPGDIAYETFNAASATLQFKGTIVHPGEAY GLMVNATTMASEFIESLPKDQVPEKSKDFEGFMMVLSNNGDVGYAKVELIIRDFDTDSFL AKKQMLIDLVDAFNKKYGENRVEISMHDQYKSPGDLIKQYPYVVNLVLHAYEKMGLVPKI IPFRGGTDGDFISEKGIPTPNLFNGGANFHGPYEYVSVESMSLLSKTLITIVQLHLKMCD HRDNTPLKRKY >gi|311092338|gb|AEKJ01000008.1| GENE 24 22144 - 22704 780 186 aa, chain - ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 186 1 185 185 183 54.0 2e-46 MTTAIELKKGMIFKQDGKLIEVLVSNHHKPGKGNTVMQMDLRDVMSGSVVHKTMRPSEKV ELVHVDLKKAQYLYDDEVNFIFMDTATYEQYEIPKEHLSEESKYLLPNINVDLKFTDEGQ LIGVGLPTTVNMKVVETQPGIKGATAASGGKPATMETGLVVTVPDFINEGDELIINTDTG EYKSRA >gi|311092338|gb|AEKJ01000008.1| GENE 25 22717 - 23526 816 269 aa, chain - ## HITS:1 COG:SP0839 KEGG:ns NR:ns ## COG: SP0839 COG1072 # Protein_GI_number: 15900726 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Streptococcus pneumoniae TIGR4 # 37 268 75 306 306 195 40.0 9e-50 MWRHCVSPGANSLDFLILLIEKSYTNYLNKQKNNLQFVTKSIVNPPFVVAVTGSVASGKS TLSKKLKLALQEKYGNDNVDLVSMDGFIMSNAELDDKGLMSQKGFPSSFKWDAIVNFLTE IKRRRPKVPYRLYSQTISDLVPDKIAYVKQPDILLVEGINLLQTYGKQKVLTDFIDFSIY LDADESLLESWFMDRFHQLLVVNANSPDNFFYRWVKMPTTEADRLAHQVWRDVNLKNLHE YILPSKERADLIVKKCRDHIMTDFYIKKY >gi|311092338|gb|AEKJ01000008.1| GENE 26 23647 - 25956 2327 769 aa, chain - ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 9 761 4 765 774 486 38.0 1e-137 MVWVNILTKKSEQQKEQEYLDHVLSLIQDRIKIVEKSISGAQSEAQDLNAHFFDDLKLDY DGYSTSMETALSIHQQQQLLEERQNAWQHATKQLSTLQRLNKRPYFARIDFQEQNEKPET IYIGLGSFADKNDQFLIYDWRAPISSIYYDGKLGSVTYYAPDGEQEVLMTKKRQFSIKDG QIINMFDTNESIGDQMLINVLNEKSSTQMKSIVTTIQREQNKIIRNTTADLLFVQGSAGS GKTSAILQRIAYLLYRYRGNLVSSDVIMFSPNQLFNDYVKNVLPEMGEQNMVQMTYRQFV SRRVPAFKVESLFDQFEDQNKNPKIAKLKDSLEFFEAINHYSKHLIKHGVVFKNIYFKDK EKPFFDKDYIKDIYYSFNENYNLRNRIEATREKLVARLNESISAEAKKAWVAKYLESISK EELSKLYDRPDQEFASSTEEERFLSKKIVINSLKQVLRKVNANSFFNIRAQYLAFLRAIP KMIDLQQYGISEKEWYDHIELVKQNFVRKQIKITDISSYLYLYDVITGRRVNYEMRYAFI DEIQDYTPFQLAYLKYNFPRAKFTMLGDLNQAIFTKDDSLTLLDKVKQLFISEKIELIKL TKSYRSTKQITDFTKQILKSGELIEAFDRNGAKPTIWHCDNASAVQKINDILIANNQEKL TTAIITKTLEEARDLTTKLKSESIKVTLIATANQRLVPGVLVIPSYLAKGLEFDAVIAWQ VNNNNYHKDDERQLLYTITSRAMYKLDLIYTGELSDLLREIKADTCKWS >gi|311092338|gb|AEKJ01000008.1| GENE 27 26121 - 28211 3019 696 aa, chain - ## HITS:1 COG:BH0131 KEGG:ns NR:ns ## COG: BH0131 COG0480 # Protein_GI_number: 15612694 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Bacillus halodurans # 5 694 3 691 692 993 70.0 0 MANKREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETHEGDSQMDWMEEEKE RGITITSAATTAQWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVTVLDAQSGVEPQTEN VWRQAETYGVPRIVFVNKMDKIGANFDFSVKSLHERLNANAHAVQMPIGAEDQFEGVIDL IEMVADVYDEDQLGSKWETIPVPDEYKEEAEMRRAELIEAVADVDDNVMEKYLGGEEISN EELKAAIRKATLNLEFFPVFAGSAFKNKGVQMMLDGVIDYLPSPVDVKPYVAHEPKTGEE VELLADDDKPFAALAFKIATDPFVGRLTFIRVYTGSLQSGSYVLNASKNSRERVGRLLQM HANTRQEIPEVFSGDIAGAIGLKNTTTGDSLTDPNHPLILESLQIPDPVIQVSIEPKSKA DRDKMDVALQKLTEEDPTFKAETNPETGQTLVAGMGELHLDIQVERMKREFGVEATIGEP QVAYRETFTKVASAQGKFVRQSGGKGQYGDVWIEFTPQEEGKGYEFEDAIVGGVVPREYI PAVDAGLQEAMKNGVLAGYPLIDVKAKLYDGSYHEVDSSEAAFKVAASLALKNAASKAGA VVLEPIMKVQVITPEEYLGDVMGSITARRGTMEGMEDRAGAKVINSFVPLSEMFGYATTL RSSTQGRGTFTMVFDHYAPTPKSIQEEIIKSRGGNA >gi|311092338|gb|AEKJ01000008.1| GENE 28 28244 - 28714 762 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518426|ref|NP_964356.1| 30S ribosomal protein S7 [Lactobacillus johnsonii NCC 533] # 1 156 1 156 156 298 93 9e-80 MPRKGNIAKKNVLADPIYNSKLVTKLINHLMVDGKKAKASSILYDAFDIIKEKTGKEPVE VFEEAMNNVMPVLEVKARRIGGSNYQVPVEVRPERRTTLGLRWLVSYSRLRNEHNMDERL ANEIMDAANNTGSAVKKREDVHRMAEANRAFAHYRF >gi|311092338|gb|AEKJ01000008.1| GENE 29 28730 - 29137 676 135 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518425|ref|NP_964355.1| 30S ribosomal protein S12 [Lactobacillus johnsonii NCC 533] # 1 134 1 134 135 265 97 8e-70 MPTINQLVRKGRHSKTTKSKSPALNYAYNSMKKEMNYDPAPQMRGVATRVGTMTPKKPNS ALRKYARVRLSNLVEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGALDTAGV DGRKQGRSKYGAKKD >gi|311092338|gb|AEKJ01000008.1| GENE 30 29311 - 29820 329 169 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309803340|ref|ZP_07697435.1| ## NR: gi|309803340|ref|ZP_07697435.1| hypothetical protein HMPREF9214_0897 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9216_0410 [Lactobacillus iners LEAF 2053A-b] leader peptidase (prepilin peptidase)/N-methyltransferase [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF9214_0897 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9216_0410 [Lactobacillus iners LEAF 2053A-b] leader peptidase (prepilin peptidase)/N-methyltransferase [Lactobacillus iners ATCC 55195] # 1 159 1 159 168 198 100.0 1e-49 MKNNYKNNILILILLLGQLSIIWMSLPYILCSKIILILSTGFFSYAIISDFFNQEFYLLL AIIPIISLIIEWKNSFGAFTAGEWKIFLILVFVFFILILSKKIGSGDLFYFIIFCGIYGV GISLHILLIACCTALIYIIFHNKNNIALPFLPFLFLGQWLTLITLLLLL >gi|311092338|gb|AEKJ01000008.1| GENE 31 29812 - 30477 547 221 aa, chain - ## HITS:1 COG:no KEGG:FMG_1337 NR:ns ## KEGG: FMG_1337 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 6 194 22 210 232 135 38.0 1e-30 MASVWIALFISVLLVHKFRYSKLLLNFVFGSMLCLQLLLIYWYYGEPSTFLHEGLPLFHC RIAAIMIPLMYYMNQKKIAVYFSWLGIIGTTLAFTIPDPSRYVWPHITNVTYIGSHILLM CASIMVIENVETGLRSIDIMSITLAMNTLVLAVDLLLKANYCYLMQLPFKLWFTPNGVII FIIMTFLLICSISFLQKEYEIACKRSLAKKATIKDDTDYLQ >gi|311092338|gb|AEKJ01000008.1| GENE 32 30543 - 31733 1256 396 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 177 396 262 465 466 117 35.0 4e-26 MRKKARSYKFSLIILLLLSFLLVIFLLMANNKRKQNQHNRIRQINQAVIYNKSHFNPCVK IYGVDVSKLTIDQAYRKVNKKAVNALMIDGRDIKLIRKDFETITRKQVEDYFNKQKTRLP NYQKYIFRNKELLDLKGKAENIVDAKVVFEILGKKYIFSRKKYYPKIECYNRSFHFLDDS LLKARIERLNQEYSTLHKKYHFETPEHGMILVRNESYGWAINSKQLIEAIKSAYINKHSV LKGHNFVYGIGYSSYGKGYGKSNNGLGNTYIAVSIPNQEAWFYKHGKLVLKINDIVTGTA ANKLDATPKGVWYIHYKQSPSVLRGKNSDGTPYASRVRYWMPFTLSGCGLHDAAWRTDWS KTAYIKNGSHGCVNIKPSLIKAVWNVVEKDEPVVIY >gi|311092338|gb|AEKJ01000008.1| GENE 33 31889 - 32674 195 261 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145223395|ref|YP_001134073.1| NLP/P60 protein [Mycobacterium gilvum PYR-GCK] # 152 259 240 346 348 79 41 5e-14 MDVILIRYNNHCNKLRFESDRESQEEPDLKPLMSRLFKFTLATTIAVTGVVVSNSLKPVK AEAAGVIAKVNYVPGYGIAVWNNINGGHTTGQYLPHGSRWVVVKTSYDKQGRLWYDLGHN HWVLASYTVSDSTPVSQSASANTSVKASAQAIINFALKQQGKPYVYGAAGPSAFDCSGLT SYVYKQVTGRYIGRTTYNQLNAGTRVSVSQLQPGDLVFWGNYHVGIYIGNGQYIHSPQPG QSVTVANISSYYYPSYGVRVL >gi|311092338|gb|AEKJ01000008.1| GENE 34 32736 - 33293 364 185 aa, chain - ## HITS:1 COG:jhp0304 KEGG:ns NR:ns ## COG: jhp0304 COG0194 # Protein_GI_number: 15611373 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Helicobacter pylori J99 # 4 185 7 187 206 78 30.0 9e-15 MKKIIIIAGPSGAGKTTISNYLQEKYNIPRVLTHTTRPPRAGEQNGKEYYFETDSSFSKL HLFEKVEYGHYQYGSSQESLQKAWSQHDLVSIILETQGVNSYFHKLPIDNICFIYITISD HSKLMQRLIERGDAPIEINKRMNSSEFKRDLQLHGVLKKYAHILVNDNWQDTKGTIAKLI EQIQH >gi|311092338|gb|AEKJ01000008.1| GENE 35 33386 - 33673 393 95 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_09460 NR:ns ## KEGG: LAC30SC_09460 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 88 1 87 100 82 62.0 6e-15 MKKSDIRIDSIVGAKSDEEISKPFEGKVEKIYENSVLLSITSYEPEDETNVSDLNGKIVV SFKNLKKLAKKPSKQAETPTNEIKISKIEAKDEQQ >gi|311092338|gb|AEKJ01000008.1| GENE 36 33781 - 33954 152 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309807294|ref|ZP_07701263.1| ## NR: gi|309807294|ref|ZP_07701263.1| conserved domain protein [Lactobacillus iners LactinV 03V1-b] conserved domain protein [Lactobacillus iners LEAF 3008A-a] conserved domain protein [Lactobacillus iners LEAF 2062A-h1] conserved domain protein [Lactobacillus iners LactinV 03V1-b] conserved domain protein [Lactobacillus iners LEAF 2062A-h1] conserved domain protein [Lactobacillus iners LEAF 3008A-a] # 1 57 1 57 57 89 100.0 7e-17 MQPLTLTKQQRQEIKKQLGSLNKLEIKGLDLHFGGHNRDHLQLAYKLQILFHRNDCH >gi|311092338|gb|AEKJ01000008.1| GENE 37 34289 - 34501 346 70 aa, chain + ## HITS:1 COG:no KEGG:FI9785_p9785L.22 NR:ns ## KEGG: FI9785_p9785L.22 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 7 52 73 123 335 68 72.0 8e-11 MEKANEKKQYLLANHSDDPFARQIEMLDSFNGSGISTSKLQADLSQKTDMYIYPFPQKKP ILLKIIIGSR >gi|311092338|gb|AEKJ01000008.1| GENE 38 34508 - 36079 1004 523 aa, chain + ## HITS:1 COG:L82520 KEGG:ns NR:ns ## COG: L82520 COG2274 # Protein_GI_number: 15672061 # Func_class: V Defense mechanisms # Function: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain # Organism: Lactococcus lactis # 1 510 155 677 715 124 26.0 4e-28 MSFQKLIKTNLLLFIVIIVLELLFAAGSATSSYIIQFAYNQLVKNILIVFLIIIASSVFL SFVSYIFSSLATYLFSKQTQKYIHSIRHKLISKYFHDKAPKVAEMENELNSNLQVLTKNY ADKSLSIIQSSFLLVTSIGSLLLMNRMLTLLALILSVITLYIPRFTRQRASNATQKVVNR NSKYLLAIEEWFNGLEELRKYTAFNKLNLVMQEVSKNLETSFVKRKKVISIADFLNGCAN SFSQIAITLLAAILFFNHQVTFGVIIAAGNFSSMILNCLLTITTSLTRIQSVQGLNKQIV EFQKVIPSHKEINTDEIYSISTHDLSISFKNGETIHFPDIRIKKGEKVLLSGDSGTGKST LFKLILNKMYPTTGQVIFEDKYGKKISPNYAQIGYIPQDGKLFPTSIINNIIMFNNKLKQ QVKNSVENNDLSKDIASMPNGFETKIDLDTINFSGGQKQKIILARNEIHNFSIILADEAT SAIDSKSSYRILKNLVSSNKTVIVIAHNLTPDMEKLFSRKISL >gi|311092338|gb|AEKJ01000008.1| GENE 39 36100 - 37671 1362 523 aa, chain + ## HITS:1 COG:L162870 KEGG:ns NR:ns ## COG: L162870 COG1132 # Protein_GI_number: 15673504 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Lactococcus lactis # 45 522 43 524 529 152 27.0 1e-36 MSFKDLYAVNRIRMISLLVLEFLTSGLIIGVSYINTYQITAIKNRKWQQFIFLITLSLIL FIISYAGLNICQYWIEKQIQQYNHKIRFKIVNHYFYDNKVHNAAEVQNRLTNDLNLIKDS KLAVYTDIPYYLAQIIFASIGLLLFHWSLLIVVLILGTLSFYLPKFLHPAMQAAALKLSQ ANKQYLDTAEKWLDGLSVLQRFSVGAQLSRIMDNASDTLESANIARTSTMQGLAVLNKAT SALLQFALLAVTAILVTNHTVVFGVIVTVESFSSYINMSVKMLATELGQIHSVDSLGNEV NADTAVVEHIGTLQSPASLTTKNVSVKFSNGKIIKFPNLNIKSGEKILLTGDSGTGKTTL FKVLLGKIKLHTGTINFKNKYGADIKINKVKIRYIPQDPILFPDSIENNITMFNSKLKNK VLDYVKDVSFESDIRKMPLGLKTKLNLQKLNISGGQRQKIVLARACIHDDDFILIDEGTS AIDKKATLDILKKLLNSPYTVIFIAHNFNDEMYSLFDREIHLV >gi|311092338|gb|AEKJ01000008.1| GENE 40 38071 - 38790 1016 239 aa, chain - ## HITS:1 COG:lin1131 KEGG:ns NR:ns ## COG: lin1131 COG0580 # Protein_GI_number: 16800200 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 1 227 1 226 234 210 52.0 2e-54 MSELLGEFFGTMVMVALGVGTGAAVNLKKSYAKNANWFYIIFAWGLAVTFGVYVAANFGS KAHLNPAVTLGMAVGGYFPWDKVFTYIVAQFIGAFFGGLIPYIHYYAHFKETKNEAEGNH VGIFATGPATNSPIFNFIDETIDTFIFVFVLIHLGNFGEGLKPFIAGFLVIVIGLALGPT TGLAMNPARDWSPRLVYTIFPVPYKSTANWSYAWVPMCGPLLGGVLAALLNYSLQNYIL >gi|311092338|gb|AEKJ01000008.1| GENE 41 38849 - 40114 1718 421 aa, chain - ## HITS:1 COG:lin2697 KEGG:ns NR:ns ## COG: lin2697 COG0766 # Protein_GI_number: 16801758 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Listeria innocua # 3 417 4 414 423 420 54.0 1e-117 MKKMIIHGGKPLKGDVWIGGAKNSTVALIPASILSRTTVVLEGVPRIADVDNLMDLLGEM DVKCKFEETTLTIDPENIKRSPLPAGKIKSLRASYYFMGALLGRFGKAVVGFPGGDDIGP RPIDQHIRGFEALGANVDNEDDKIIITAPEEGLRGAKISLAMPSVGATMNIIMASVTANG QTVIENAAKEPEIIDLAIFLNNMGAVIRGAGTDTIRINGVSQLKAKASHTIIPDRIEAGT YISLAACIGNGIRIHNVITEHLDSYLAKIEEMGVVTDVDEDSIFVYPAGDLKMVQIKTEP YPGFATDLQQPITPLLLTAKTGEGIIIDNIYPKRVGHVPELRKMGGEICVENNIILIHPS SKLKGMDVNAGEIRAGAALMIAGLMADGETVIHNAGNILRGYDRVQDKIRKLGGDITVVE E >gi|311092338|gb|AEKJ01000008.1| GENE 42 40246 - 41868 2041 540 aa, chain - ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 531 3 530 535 748 65.0 0 MTKYIFVTGGVVSSLGKGITASSLGRLLKNRGLKVTMQKFDPYINIDPGTMNPYQHGEVY VTDDGTEADLDLGHYERLVDVRTSKYSNVTTGKIYQEVLEKERRGDYQGDTVQVIPHITD MIKKKIMRAGLTTDSDVVISEIGGTVGDIESTPFMEAIRQMRREVGDENVMYIHCTLVPL LHAAHEMKTKPTQHSVATLRSIGIQPNMLVLRAEQSIKQELKNKISNFTDVPVERIMESI DEPSLFDVPLSFQKQGMDQLVCDYLHLDSPRKTADMESWKRLDQRAKNLEHTTKITLVGK YVELEDAYISVTEALQHAGYLYSTKIEVDKVQAENITEDNIADIMRGSEGLIVPGGFGTR GLEGMITAIKYARENDIPFLGICLGMQMASVEFARNVLNMKGANTTEADPKTKYNIIDIM ADKRDVENIGGTLRLGLYPATLKKGTKTSAAYDGESVIQERHRHRFEFNNEYRQAFEDAG MIFSGVSPDNRLVEIIEIPQNRFFVATQYHPEFLSRPQRPEGLFKAFIGAASGLPISEFN >gi|311092338|gb|AEKJ01000008.1| GENE 43 41976 - 42476 735 166 aa, chain - ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 120 16 135 191 94 52.0 1e-19 MIEVARAILQDSGKRMAFADIVNAVQQFLGKSDEEIRDRLPQFYTDLNTDGEFISMGDNV WALRSWFPYESVDEEVNHPEDEEDLPRKKNHRKVNAFIADSDSDDIIDYDSDDPEDDDLS LDETAADDYSDDSDLDDADDDDELDDGLEGQLSELHKDDLDSDDEN >gi|311092338|gb|AEKJ01000008.1| GENE 44 42541 - 42972 454 143 aa, chain - ## HITS:1 COG:no KEGG:FI9785_297 NR:ns ## KEGG: FI9785_297 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 2 139 3 139 139 113 44.0 3e-24 MKKVKVEITSIIKQEGQVEHFKCTGCGTLSCDNDTYRIEYMEKNQSAEIPVKLLYKTDEL IMQRGTIENNNYNMMKFMANEKKNCRLIAAGKIMDLTSFTKSINFLKKNANNIQLKVEYQ LFSDIYLIGDYKISIDCFEDTQS >gi|311092338|gb|AEKJ01000008.1| GENE 45 43112 - 44488 1631 458 aa, chain + ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 11 445 2 427 434 470 54.0 1e-132 MRDINNINNFHEQVLRDPVHTYIHIKNPIIFNLVNTPEFQRLRRIKQLGPTSFVFFGATH TRFEHNLGVYELTRRICNIFTQKYATQQSDDGLWDPSNNLLVECAALLHDLGHGPYSHTF EHLFNTNHELMGQKIILDENTQINKILKQVSPDFPQKVASVIAKTYPNPQVVKLISSQAD ADRMDYLLRDAYFTGVSYGAFDLTRILDVIRPYKNGICFLDKGIHAVEDYIISRYQMYQQ VYFHRIGRSMEVILHHLLQRAQEIYQRNDIKDFTVTPQLEAFLANKWSLEDYLALDDGVM ETNFMLWTKSGDKILADLAGSYLYRRPLESVKVNNQTKYLIPKLNELIKNAGFDPQYYTA TNSAFDEPYDAYKPTGKNAHSPIEIMENDGTLVELSELSPLVKALNGTVQGDERFFFPKT MIKSLGDVQLFQPLYSEFQSYINNNSLQDPQKIKGTDF >gi|311092338|gb|AEKJ01000008.1| GENE 46 44517 - 45209 1026 230 aa, chain - ## HITS:1 COG:NMB1604 KEGG:ns NR:ns ## COG: NMB1604 COG0588 # Protein_GI_number: 15677454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis MC58 # 3 225 2 224 227 308 65.0 6e-84 MSKLVLIRHGQSQWNLSNQFTGWVDVNLSDKGVEEAKKAGRLIKEHGLQFDQAYTSVLTR AIKTLHFALEESGQLWIPETKSWRLNERHYGALQGLNKKDTADKYGDEQVHIWRRSYDVL PPVIEDDSEYSQAHDRRYAHLDPHIVPKAENLKVCLERVMPFWEDHIAPDLRSGKNVIIA AHGNSLRALTKYIENISDEDIMGLEMKTGEPVVYTFDNELNVVDKEKLDD >gi|311092338|gb|AEKJ01000008.1| GENE 47 45398 - 45841 430 147 aa, chain + ## HITS:1 COG:L52568 KEGG:ns NR:ns ## COG: L52568 COG2461 # Protein_GI_number: 15673592 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 8 130 316 436 490 65 30.0 4e-11 MPNNKINLSGGSLTLEQLDAIFKTIPQEFDVVDENDTIVWSSMNEGRLFERTTANLGKNV LDVHTEKSKPHVKRVLEQMHNNERKSLSINLWSKRWSKNQPINVSFYSLHNESGDYIGCV EVTQPTKDYQWKWRRLKNFLHIIFKKR >gi|311092338|gb|AEKJ01000008.1| GENE 48 45909 - 46709 518 266 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0165 NR:ns ## KEGG: LGAS_0165 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 266 1 266 275 177 37.0 4e-43 MNKRHTLLFTLMLVCCMTSGCAKKAIDNQSSNDNIRTVATTTLKHAFNQSFNSGHFIETV QSKKMKQDSSMTALFKPDLVNIKYSLNQGNKVNSEQFWLNNNMVYILLPQNKGKWIKNTN TNDKFSPDQIFNRFNAKNFSNLNQVMTNKAKIKISNGNYIFTYSKTDTSAWRSVNNLVID ALNTPGSQNMNLARAVKVSEPTRINFVYIINKHTNKIVRIDLAADFVFSNDYTCSWHAIY DEFGQHDTLAIPQNIVKSAFDIRKQK >gi|311092338|gb|AEKJ01000008.1| GENE 49 46746 - 47564 800 272 aa, chain - ## HITS:1 COG:BS_fruB KEGG:ns NR:ns ## COG: BS_fruB COG1105 # Protein_GI_number: 16078503 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Bacillus subtilis # 1 248 1 288 303 62 23.0 9e-10 MIYTITLNDDKNNTCCGTYVSLLLKKKDIESIALGIIPNDYQKAEKLLDDADIKHDFIKI DATQLDLFGEDKQVAISAQQKLLDNLKCLNKGDILVICGSFAKGISPVYLSDMAAIAHKK GAYLVVSVPYATVMDILPLQPFLIQLTGQDIKNIFDKVAGRQLLYQSAHYMVAKGASHVL CTLDKQHIAVINMTQGFVAEVPDVKKVSGVGCQESLLATFLTGILKNHMTITNLANSVAA YADSLQKEGVTDYSNNLALQRKVIAQKIMFDD >gi|311092338|gb|AEKJ01000008.1| GENE 50 47781 - 49046 621 421 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 4 419 6 415 418 243 37 2e-63 MEEKMDILEDLKWRGAINQQTDEQGLREYLQQHKDLTLYCGTDPTGDSLHIGHLIPFMIL KRFQMAGYHPIILIGGATGAIGDPSGRKTERVLQSEEQVRRNEKSLTAQMEKLFGTENFE IVNNASWLSKLTLLDFLRDYGKLFQVNTMLNKDIVASRLATGISYTEFTYQIMQAIDFYY LNKNKNVTLQIGGGDQWGNITGGIDLIHRIEGADHPAFGLTIPLMLKSDGTKFGKSAGGA IWLDPEKTSPYEFYQFWINQDDRDVIKYLKYFTFLSHQEIEDLAISVEKEPWKRLAQRKL AEEVTKFVHGEAGLRDAQFITNALFEGNIKDLSVKQIEQGFKNAPYVEISKESKNLVDLL VETGIEKSKRQAREDINNGAIYVNGTRQDDCDFLVDVPNSFEGKFVIIRRGKKKYTLLKT K >gi|311092338|gb|AEKJ01000008.1| GENE 51 49275 - 49907 432 210 aa, chain - ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 7 162 1 163 213 67 31.0 2e-11 MAWVIVMYNLIALIVGYLFGNILCAFIVCKIKFGMNPTQIGSHNPGTANVGSIFGKKWGL LTCVGDIVKAILALILVLIVCPMHISLAYCGLGLMLGHAFPFWNKFNGGKCVAVSLPIVI FFDWQWGIFCIIIELLLMIILKNLAVSPVISLLIYSIAMFVIYSNCAGILFFIGWCVMLY KFRNDLVAYCKGKGKRTDILFLFKRVLKHK >gi|311092338|gb|AEKJ01000008.1| GENE 52 49895 - 50983 848 362 aa, chain - ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 26 319 8 303 304 183 33.0 4e-46 MEEKRRLSRVEINHQREKKKRVYRWIKYIIGIIFLFACIYVTAVYLKTKNAFDKTYDPQN SVTQAGFSSKKKFAVLLLGTDTGALGRHEKRGNTDTIIVATVNPNDKKVSLMSIPRDTMA EMIGSPRFSVHKINAAYNMGGPKMAMETVSKLLNVPLKYYITINMGGMTKLVDGVGGVDV VPPLTFTYDGCSFTKGVKTHLDGKKALAYARMRYDDPRGDYGRQLRQRQVIMSILKHSIS FDTVKNLDEVLNTASNSIKTNIRFDSFISIFKNYRDCSNNMSNDYLHGNGAMIGDASYQV MSNKELNRVSKILREQLGLEYVELDNNETYQNSKNKQFDWLSGNQNQPYYIYEPNSNKLW HG >gi|311092338|gb|AEKJ01000008.1| GENE 53 51019 - 51654 632 211 aa, chain - ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 200 1 201 214 193 46.0 2e-49 MKIMLTGFNPFNGEKVNPAQEVLKFLPDTIKGHRLIKLNVETSFEKAASQVYDALLAEMP DYCINIGQAGGRSGITPEKIAINWVDASIADNMNYQPKGQKIVAKGMDGYFTQLPINAIV KNIRNSGLPAKVSNTAGTYVCNYLFYKVQYWRNTEFPNLKGGFIHIPYLPSQVLQSNQPS MSLNDITNAMMIMLETVIDYDGLKDITSLYD >gi|311092338|gb|AEKJ01000008.1| GENE 54 51737 - 52288 441 183 aa, chain + ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 3 182 2 181 183 211 52.0 7e-55 MSKQALLIIDYTNDFIDDHGALSCKQPGQILENEIVSLANQFLQQGDFIILPTDLHIKND PYTVESKLFPPHNLANTWGRQFYGKLENWYQTNKDSNSVKVIDKSHYSSFCGTSLDLFLR ERNITTLHLTGVCTDICVLHTAVDAYNLNYNLVIHKNAVGSFSPEGHLWALNHFKTCLGA QII >gi|311092338|gb|AEKJ01000008.1| GENE 55 52341 - 53117 886 258 aa, chain - ## HITS:1 COG:SPy1828 KEGG:ns NR:ns ## COG: SPy1828 COG4858 # Protein_GI_number: 15675655 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 43 244 6 209 218 80 30.0 2e-15 MSLEEKNAETIKAQKLHLQKQAMQINKVNDIERASADDLYALLSNKNSDYVFKLKKQLAD QGKQTEEQVAIMIDKLLPEIVVAQKKGVTAVNYYGKSPSEKAYELLHPVEKPKETSFTML VLDNILLYLTCFLGMFGLIQMFSNQKNNSQNMGIITIMSVGIIFGILMAYYNRMLAMDKK DRPAVWKLIAYGIVMLVGVYVWIAIVSVVPIFRPINIVLPAVVNVGMGVIAFVLRMYLKK KYNIIDPLRAKQLSKYNK >gi|311092338|gb|AEKJ01000008.1| GENE 56 53129 - 54229 1482 366 aa, chain - ## HITS:1 COG:SP0004 KEGG:ns NR:ns ## COG: SP0004 COG0012 # Protein_GI_number: 15899953 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pneumoniae TIGR4 # 1 366 1 371 371 458 65.0 1e-129 MSLTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIEPNVGMVEVPDKRLARIQELIPA KKVVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIVHVVRAFEDDNITSVTGKVD PEEDINTINLELAIADLDAVNRRIAKVQKVAQQGDKAAKAEMAVLEKLKPVLEEGNAARS IEFNDDEQQIVKGLFLLTTKPVIYVANIAESSMADPESDSLYQIVKKHAESENAEALGIS AATEEEIASMDESDRQEFLEAEGVEESGLDRLIKAAYHILGLRTFFTAGGTETRAWTFRD GMKAPQVAGVIHSDFERGFIRAEVVSYDDLDKFETMQKVKEAGKLRLEGKDYLVQDGDII EFRFNV >gi|311092338|gb|AEKJ01000008.1| GENE 57 54242 - 54493 384 83 aa, chain - ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 2 61 5 64 65 81 56.0 4e-16 MYQLADVVQMKKPHACGENQWEVLRIGADIRIKCLGCGHLIMMSRADFNKKHKKVLRTAK DPVNLKSEFYVPKDKIIIPNINN >gi|311092338|gb|AEKJ01000008.1| GENE 58 54508 - 55386 1118 292 aa, chain - ## HITS:1 COG:BS_spo0J KEGG:ns NR:ns ## COG: BS_spo0J COG1475 # Protein_GI_number: 16081148 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 9 285 3 277 282 254 52.0 2e-67 MEKRSKGFKSLGRGLEALFDDGPKIKDGEEIRDIKLDDIRPNPYQPRKNFDDKGLQELAE SIKENGVFQPIIVRKSVEGYELIAGERRFRASKIAGKETIPGIVRDFDEAKMMEVAILEN LQREDLTPLEEAQAYETLQKNLGLTQEDVSKRLGKSRPYIANYLRLLTLPPKTKRLLQYG KLSMGQARTLLGLKDKSQIDSLAKKVADEGTTVRRLELLVNKINTKSQEQSRKVTNKSKF IAASENKLSDKFGTKVNISSSNRGNGHLSISFKSTEELNRILDVLGIDLDKE >gi|311092338|gb|AEKJ01000008.1| GENE 59 55370 - 56143 758 257 aa, chain - ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 250 1 250 253 328 64.0 6e-90 MAQVISIANQKGGVGKTTTTINLGASIAIRGYKVLIIDTDPQGNATSGLGVEKSSVDQDV YNVLIDEISMSKTIHHTSTPNLDIVPATIQLAGAEIELTSLMARETRLKQGIDEISDQYD FILIDCPPSLGQLSINAFTASDSILIPVQSEYYAMEGLSQLLNTIRLVQKHFNKNLGVEG VLLTMLDARTNLGADVVKEVKEYFNKKVYKTIIPRITKLAEAPSFGKPITEYAPKSRGAQ VYDSLAKEVLKSHGKKI >gi|311092338|gb|AEKJ01000008.1| GENE 60 56146 - 56991 1049 281 aa, chain - ## HITS:1 COG:BS_yyaA KEGG:ns NR:ns ## COG: BS_yyaA COG1475 # Protein_GI_number: 16081151 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 15 279 28 283 283 199 45.0 4e-51 MSLFFSHKDKLPENKKITDIDLDNIVPNRYQPRRAFNDETIAQLAQTIQEQGLLQPIVVR HILDSDKYEIIAGERRYRAVKLLKWATIPAIVNSMADEQVASLALIENLQRENLNPIDEA KAYAQLMKINNLTQEQLAHQVGRTQSYIANKIRLLKLTPKVQSFLVAQKITPRHGRALLT LSASDQDRAVSEIVKKDLTVKETENMAQDIDRYFSNMGQEGATKAKASRKVTVKTGSDFT VQINTIKQAIKMVKDSGMIVKQHENKSKDSYKITIEILKGE >gi|311092338|gb|AEKJ01000008.1| GENE 61 57012 - 57731 708 239 aa, chain - ## HITS:1 COG:BS_gidB KEGG:ns NR:ns ## COG: BS_gidB COG0357 # Protein_GI_number: 16081152 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Bacillus subtilis # 1 239 1 237 239 248 52.0 8e-66 MNSDIFKELLLKQGIELSARQQEQFRTYYHQLIVANEKTNLTRITEEDEVYLKHFYDSLT PIIKFREMISNAESLCDVGAGAGFPSVPIKIIYPDIKLTIIDSLGKRLTFLDKLVKQLGL DNITLVHSRAEDAGRNIKLRENFDVVTARAVARMSVLSEYCLPLVKVGGYFVALKGPKLS DELFEAQNALTILGGQIEKTCEFTLPDSMDDRTLVAVKKIKKVSNKYPRQAGIPNRKPL >gi|311092338|gb|AEKJ01000008.1| GENE 62 57885 - 58424 430 179 aa, chain + ## HITS:1 COG:no KEGG:LJ0553 NR:ns ## KEGG: LJ0553 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 178 1 177 178 181 54.0 2e-44 MIILLLVLAYLIYQTKKGFQIGFAQRIINLVFSAIIFSIAVIFQNPLGDWLFMEFSNKTP NFNSTNNSSDLILYHFIGFFIILFIGKIIKRFIKKRLPKREHNKHHLIGLLDSILGACIS FFAAYFFVYIILSMFEFFENPWFIQQTIDAPFLRFIIYSTPLISNGMFKSIFGISQTLS >gi|311092338|gb|AEKJ01000008.1| GENE 63 58459 - 59244 1037 261 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 14 258 53 297 298 123 31.0 3e-28 MQEPIVLDHIKIPNARDLGGYLGADGRKILKKRLLRTGKIIDLSNDDKKFLINYGVKTVI DLRTPSEYNVNPDTPIEGVEDVHIPVHRDAKLDTKLIAMRQTYDKIQYAGFKSMCYQYRR SITEPFSQNAFKKILETLASQKDGATIFHCSEGKDRTGLTTVFILYLLGVNWETIRQDYL YSNFTLRDYQAAMDKKIIAEGGNDILRSNIRSLAGVANEYLDTALLTIKQEYDGIDNFIH NQLGLDQEFIQEFRNLYLEVK >gi|311092338|gb|AEKJ01000008.1| GENE 64 59262 - 59822 678 186 aa, chain - ## HITS:1 COG:L171116 KEGG:ns NR:ns ## COG: L171116 COG0431 # Protein_GI_number: 15672349 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Lactococcus lactis # 2 177 1 172 270 137 45.0 1e-32 MLKLIAIVGTNAEFSFNRFLCQYIAKRYGDKFNIEVCEINDLPLFSKDDYPNEAVQNFRK KLRLADGVIIAKPEYDHAIPAALKSAMEWTGKHSLGSGNDVMRLKPTMVVGTSYGVQGAS RAQEDMREILLSSDEGALVLPANEILIGYAATNFDKQSHDLINKTIIKQLDVAMDNFYQF INQWNK >gi|311092338|gb|AEKJ01000008.1| GENE 65 59816 - 60373 496 185 aa, chain - ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 180 1 183 187 156 44.0 2e-38 MKIVALVGSNAKFSYNRELLKFIQKHYIDNYEIKLAEIKNIPLFCEGLAEPDSVKNLANQ ILDSDMVIIATSENQHSVSSALKSVIEWLSSVEHPFLNKPVMVIGVSSQHTGSARAQVRL KNVLASPGVGAIVYNGNEFMLGNASEKFDEDGNLDSATVEFLDKFWHQFMDFYQTINGRK LDNQC >gi|311092338|gb|AEKJ01000008.1| GENE 66 60386 - 60607 256 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309808183|ref|ZP_07702093.1| ## NR: gi|309808183|ref|ZP_07702093.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9210_0289 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9210_0289 [Lactobacillus iners SPIN 1401G] # 1 73 1 73 73 116 100.0 5e-25 MEDNKKTIVLKFNTEEHTIDMNFSPDLTDEMEIGYILSSSFLSFAAHQGVSKEVLHDIID NQYSEFLSQNNED >gi|311092338|gb|AEKJ01000008.1| GENE 67 60705 - 62117 1357 470 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 7 467 8 473 474 283 35.0 7e-76 MIKKVGRSACTSILIGKKATIDQSIIIGRNEDCKTAWPKHLAFNQHQVKINNIFKSKANK FTIDLPNEIFSYSSTPEWTDQYGLFEEDGFNEYHVAMSATESAYANERVLACDPFNEETG ILEEAMITVVLPYIKTARDGIKRLGNIVETHGAAEANGILFADKNEAWYMEIGSGHHWVA QRIPDDSYAVVANQLSIQIIDFNDADNFMYSNNINQFVIDHNLWPQDKPFDFRRIFGTHD DSDLTYNTPRVWIGQKILTPSVSNQPQSFELPFIQKPDHPISIEDAQRVLSDHYNGTPYD LTKAKNVNNSTFRPISIATTQESHLLQLKDQNMTQWLALGIASQSVYIPFYPQGTIVPNL FKYGKKEYSANSAYWVFKLAGTLVDRNWTKYSPYLINTQKEVRYTLKKIRYQYDQKLVNE TQQNKVIDIVNQANKEMAQVAIKAFKKLISQLITLQTADSPLSFKIDPNL >gi|311092338|gb|AEKJ01000008.1| GENE 68 62141 - 63520 1233 459 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 12 459 56 506 506 408 49.0 1e-113 MSNFVFKTNSINNLESYYDAIVIGSGGAGLSAAIQAHELGLKVAILEKNNKLGGNTARAS SGMNAAETNIQYQQGIIDSMTKFYQETLQGGGQLNDPDMLHFFVAHAPLAIAWLKDHNIL LNELTITGGMTIKRTHRPASKEPIGNFLITNLLKEITKQHISVFNNAKVVELIHKDQDFA IKLENGQLISAKVVILATGGFGASKEIIKKYRPDLLSYKTTNQDGTTGDGLKLATKIGAK LIQMNFIQVHPTAQTDNQHTYLIGEAVRGEGAILINQAAARFVNELDTRKIVANAITNLH EDGAWLILDQEIRNHVKALEFYDAVGLVKTGQTISELANAISINPQALINTIQRWNQAIA QNNDVDYHRTTGLERPISTAPYFAIHVHPAIHYTMGGIHIDQHARVLDISGNIIKGFYAA GEVTGGLHGNNRIGGNSITETIVFGREAAIQAAKYILSK >gi|311092338|gb|AEKJ01000008.1| GENE 69 63599 - 64468 1102 289 aa, chain - ## HITS:1 COG:L128697 KEGG:ns NR:ns ## COG: L128697 COG3833 # Protein_GI_number: 15673667 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Lactococcus lactis # 5 289 1 285 285 337 65.0 2e-92 MSKKMKSYSAQRRLSLALRYLLLGFLAILWILPIVWIILASFSFNNTGFVSEFWPEKFTL DNYIGIFTNSQYPIVNWIINTLLVAIASAILSTFITISVAYVLSRLRFGFRKPFLQIALV LGMFPGFMSMIALYYILKALNMLNLVGLLLVYVGGSGLGFYIAKGFFDTMPRAIDEAAEI DGATAWQVFIHIGLPLSKPMIVYTALTTFMAPWVDFIFSGIILSTSGNSKNYTIAYGLYN MLTSSKGASTSNFAQFIAGCVIIAIPITILFMIMQKFYVSGITAGSDKG >gi|311092338|gb|AEKJ01000008.1| GENE 70 64474 - 65823 1103 449 aa, chain - ## HITS:1 COG:L128696 KEGG:ns NR:ns ## COG: L128696 COG1175 # Protein_GI_number: 15673666 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Lactococcus lactis # 1 449 1 452 452 493 60.0 1e-139 MFKKKHVAPEATFGETFAKGDIATKLSFFLMGVNALKHKQWVKGLSFLVTEIVYFVWLVL SGISALSMLSNLGKIKKKQVVFDKAQGIYLTKQPDNSVLILLFGILAILLTIGFIYLYYV NLKSNRNLYVLDRDHKHIPTNMEELASLLNTRLHSTLMFLPILGILLFTVLPTIFMISMA FTNYDSHHSIGFSWTAFSAFGSVLSGDLAGTFFPVLGWTLIWAVAATVTTFFFGVLLALL IESKGIKHKNFWRTIFVITFAVPQFVSLLMMAQFLDLQGPLNSLLKMVGIHAIHFIDDQA SPLVARITVIVVNMWIGVPVSMLTSTAIIQNLPQDQIEAAKIDGASAVQIFRYITFPQIL FVMSPALIQQFIGNINNFNVIFLLTGGKPFNNNYNGAGSTDLLVTWLYKLVFGQQQRYNA SAVLGILIFIISATVSLIAYRHTNAFKEG >gi|311092338|gb|AEKJ01000008.1| GENE 71 65886 - 67100 1767 404 aa, chain - ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 1 402 1 407 410 316 47.0 6e-86 MSLLKKLGVSSVVALAAVSLAACGSKKDADKSAESSKPLTLWVDTQQVGYYKKIVKEFNK KYPKIKVRVTQSPNGSAQAKTDVGKDPAKAADVFEVPNDQLGQMAESGYINPLSPDAVKQ IKADNVPEAYKGVEWKGKVYAYPFAEQAQTLYYNKSKLSASDVKDWKTLTSKGVVATDFT NAYTMFPVFFTAGNKLFGANGEDPKGSTVASENGVAALKWFAEQKGNKGVMQTSNGLNQL KKDKAQAILDGPWNAANIKKILGKNFAVTVYPKINVAGKDAPMQAFLGIEGFAVNSHTSN AKNATLLAAFITNKAAQLVAHKEAGQIPVNKAAQASDEIKNDDVAKAVIAMAKKQSVLMP KLSQMAIFWDGASPLISGAYDGKIKADQFKAQLDKFAAKISKKN >gi|311092338|gb|AEKJ01000008.1| GENE 72 67204 - 68307 1499 367 aa, chain - ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 367 1 377 377 511 64.0 1e-145 MVEVDLNHIYKKYEGNDRYSVNDFDLHIKDKEFIVFVGPSGCGKSTTLRMIAGLEDISEG TFEIDHQVMNDTAPKDRNIAMVFQNYALYPHMTIYDNMSFSLKLKHYAKEEIDKRVKHAA KILGLEDYLTKRPSELSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAKLRVTMRAEIAK LHQRLGTTTIYVTHDQTEAMTLADRVVVMSVGEVQQIGTPLEVYNKPVNMFVAGFIGSPQ MNFFNVHYKDGYISDGKGLNIEVPAGKASMLESKGYADKDLVFGIRPEDIHSEEAFLETW PHAVIDSEVVVSELLGATIQLYQKVNGTEFVANVNARDYHKPGDKVKMGFDVNKAHFFDK DTQKAIR >gi|311092338|gb|AEKJ01000008.1| GENE 73 68327 - 68989 842 220 aa, chain - ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 2 219 1 218 226 192 46.0 4e-49 MLKGLIFDLDGVLTDSARYHLAAWSQLAEKLGIHLDAKAGDGLRGLSRMDSLNLILKFGH QEDKYTEAQKEEFAAEKNSLYVESIKAMTASDILPGIEQLLTDAKKQGLKLAIASASKNA PTILNQLNIMDKFDAIVDPSTLHKGKPDPEIYQKAQELLGLESDEVISFEDAAAGVASIK AAGQFAVGIGDKKVMAAADYIVSDTGKLRLEEIEAAFDQK >gi|311092338|gb|AEKJ01000008.1| GENE 74 68974 - 71247 2347 757 aa, chain - ## HITS:1 COG:NMB0390 KEGG:ns NR:ns ## COG: NMB0390 COG1554 # Protein_GI_number: 15676304 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Neisseria meningitidis MC58 # 3 756 4 751 752 852 58.0 0 MKRIFEVDPWKVTSHIFNPEDKRLQESMTAIGNDYMGIRGNFEEGYSADGLQGTYLAGVW FPDKTRVGWWKNGYPEYFGKSLNAPSFINVEITVNGERVDLAKSKFSDFYLSLDMHQGLL TRSYVYEGKDVKVKFEFNRFLSNKIKEAALIDIKATVLEGSAKIKFNAKIDSNVVNEDSN YDEHFWQPLGEDGEGRTVQVITKPNPYEGVPQFTVLLKQGLKANGEKIEGKVTTTTGVLS ETVEIELNENDTYELEKDVVVVTSRDVEPAEQAKKATELLDAVQSESFADNLADHTAIWE KRWEQSDIVIAGDEAAQQGIRFNILQLFMTYYGEDRRLNVGPKGFTGEKYGGATYWDTEA YIVPMYLAVTKPEVTKALLEYRHEQLPGAYHNAKQQGLKGALFPMVTFNGIECHNEWEIT FEEIHRNADIPFAIYQYTNYTGDDSYVKDEGMDVLVGTARFWADRVHFSKRKGKYMIHGV TGPNEYENNVNNNWFTNTMARWLIGYTLERLPKATVEAQKRVAVTDEEKAKWQDIVDNMY LPEDKELGIFVQHDTFLDKDLRPVSEIEDQRPINQNWSWDKILRSPFIKQADVLQGIYFL NDHYTMEQKEKNFDFYEPMTVHESSLSPCIHSILAAELGKKEKAVELYERTARLDLDNYN NDTVDGLHITSMSGSWLAIVQGFAGMRYDADHLKFNPFVPDKWNHYSFKLNYRGRLIEVY ADHKEIKVSLLKGADLEIIVKGDKVQLKEGETQCLKA >gi|311092338|gb|AEKJ01000008.1| GENE 75 71355 - 73103 1552 582 aa, chain - ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 579 1 582 584 567 50.0 1e-161 MQLSAISHRPDSEDAFLYDKDHLRIRLHTAKNDIAKVTVFYNDPYMFMPDKEGKYIFHYH IKKMHLISKGQVHDHWGVTLTAQYHRIQYLFEIQDTSGRKIFLTDRGFRTACKEGLNKTQ NYYRLPYFHEIDMVKTPEWVKGTVWYQIFPERFSNGNKSNDRPNVKDWDPQTHPGREDFY GGDLQGVINHLDDLRELGVNGLYFCPIFKASSNHKYDTIDYKEVDPDFGDKGLFRQLVQE AHKRGMKVMLDAVFNHIGVNSPQWHDVIKNGSKSKYADWFHINYFPVEPYHDPTKGQGEP PYDTFAWEPHMPKWNTANVEVQNYLLDIASYWIKQFDIDAWRLDVAPEVDHNFWRLFRSK VDSLKKDFYIVGEIWHSAQSWLDGDQFSSTMNYPFTQQIEDHFLLGTKTSHQMVELLSDQ LMLYRAQTNQVMLNTLDSHDTPRILTMANGDKKLVYQTIAFTFMQTGSPCIYYGTEMGMT GGPDPDCRKPMDWSHKGDEFWQKIAGLVKFRLQNARILGKGNTRMRVTEDGLIRIKRTES GQSILGYFNTTDKPVSCKMKAVLSQNFANDILEPHGFVIGYN >gi|311092338|gb|AEKJ01000008.1| GENE 76 73118 - 74779 1476 553 aa, chain - ## HITS:1 COG:BH0872 KEGG:ns NR:ns ## COG: BH0872 COG0366 # Protein_GI_number: 15613435 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 4 520 5 519 559 361 36.0 2e-99 MANWYDRAIIYQIYPKSFQDSNGDGIGDLNGIRQRIPYLKSLGINAVWLNPVFVSPQVDN GYDVSNYYAIDPSMGTMEDMENLLSELHDAGIRVIMDFVLNHTSYQHPWFQDAIHNKDSI YRDYYIFAKGKDGKEPNNWGSFFGGSVWEKDPAGTDEYYFHLFDKKMPDLNWKNPEVRHA MLDVAEFWLKKGIDGLRIDAFIHIGKADLRQNYPTDSDDDQPIVAEPFFANLSQVQKWLR PFCKQIKADYPDTLLLGEAASANVNLAVDYTLPRNELMDTVITFRYFTEDLTKLDESFST RYQPRDLDIPAFKQNQVVWQQTLSNVSLPTLYWNNHDMSRVATRFAKDEQQVKGLAMLMY LQRGIPVIYYGEELGLKNLHFDTAEPFNDITVDEFLASAIKAGKTKEQALEMVSKMHKLA ARNVMPWDDSDNSGFTTGEPWNVGVPANADNVAGEENDNNSVLNFYRQLIDLKKTDLFTN GTYYLFDTNKYTYVYERDLEDEVGIVAVSLSSKKEMIELPIGNYDIKLKTGTCELVNNQL TLAPGSGVVLIKK >gi|311092338|gb|AEKJ01000008.1| GENE 77 74945 - 75898 787 317 aa, chain - ## HITS:1 COG:BS_yvdE KEGG:ns NR:ns ## COG: BS_yvdE COG1609 # Protein_GI_number: 16080516 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 315 1 315 316 321 50.0 1e-87 MVTLSDVAKEANVSKMTVSRVINHPEQVTKELRSLVEKAMKTLHYSPNSAARALAKNRTN VVKFIILENIDTTEPYYMNLLFGITQGLNRHQYALQLLTSVDEITKGNADGYIITGARSS DSEWLDKLDKPFVLFGENRYGYDYVDTDNKIGEQIATQYALNKNYQSIIFIGINEKEAFE YSREAGYINTLQSHNKVPKIFRLPNHSHSAQHFIDEHWKEFAHNTCFICASDRLATGVVR AIIAKGGEIPKDFGVIGFDGIFLDQVSHPKLTTVKQPIIKLGELLSDMLLQKISQSGAQQ GELLIEPTLIKRDTTRN >gi|311092338|gb|AEKJ01000008.1| GENE 78 75992 - 76768 862 258 aa, chain - ## HITS:1 COG:lin2049 KEGG:ns NR:ns ## COG: lin2049 COG2365 # Protein_GI_number: 16801115 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 1 186 73 248 326 94 36.0 3e-19 MNDRLIILDGAVNFRDLGGYVAANGRSVCWQKIYRSDRLDNLTMQDMEILAQKHIVTDCD LRTSYEQSYWQDRLWDGVAHYDCHIYNEEDITYENQITTETVNNLINSLPVSQGIVGRRY QKILLDKTGQMALKRVFQEILSLDENDALVFHCTAGKDRTGLVAAVILLGLGVKEEDIIA DYLLSNELYLFSIKHTLPTDDDLQNIIERMNLNGVDALSIQTIIQTINQGFGGFDNYFLK VLNFSKADLSEFRNKLTV >gi|311092338|gb|AEKJ01000008.1| GENE 79 76936 - 77607 723 223 aa, chain + ## HITS:1 COG:SPy1034 KEGG:ns NR:ns ## COG: SPy1034 COG3442 # Protein_GI_number: 15675031 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 6 208 18 222 263 174 47.0 1e-43 MNKSSIKIAYLYEDLMNTYGDSGDVKIIKFLLKKAGYETEVDNVSLGTNFDASKYDFVFF GGGQDLEQTIVAKDLPRHKQTLQKYIESGNPMLCICGGYQLLGSYYKTNAGITIKGLDIV PIHTVFKADKRMIGDTHYITQWGEVRAFENHSGQTYFDNDKLKPLGKMIEGYGNNPQDGV EGMRYKNLIGSYSHGPLLKNENIANALVDKIITRYHRRTEHAL >gi|311092338|gb|AEKJ01000008.1| GENE 80 77597 - 78982 1311 461 aa, chain + ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 9 457 11 460 463 427 50.0 1e-119 MPYNLLRKENLSRYINTDKHFVKTIGAFELLTLGIGSVIGTGIFILPGTVAATKAGPAVT ISFVIAAFVCALCSMCYAELSASIPIAGSAYSYGNILYGEFIGWILGWALILEYMLSVAA VSTGWASYCNSLLSSFNWQLPHFLSGPFNPAQGTYVNLLAILSVIFIAALLSKGMKSSLK FNNIAVLLKIGIICIFIIVGLFYIKPKNYTPYFPFHFSGIFKGATTVFFAFLGFDVISAS AAEVKKPEKNMPIGIIGTLIIAVLLYIGVSIVLTGMISYNKLDVANPVAFALKSVNQGWI ADCLSIGAIIGMSTMMLSMIYSSSRLIYSIGRDGLLPNFLGKINTVGLPKNALIVVTIII ALMGGLFSLDELTSLVSIGTLLAFTFVSFGVILIRRRTDIPSGTFKVPLYPFIPLLSGIC CIGMMTFLSKRTFMFAGIWFSIGILIYLLYGYKHSKINQIK >gi|311092338|gb|AEKJ01000008.1| GENE 81 79184 - 80119 862 311 aa, chain + ## HITS:1 COG:no KEGG:Ldb1900 NR:ns ## KEGG: Ldb1900 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 55 263 72 280 281 233 59.0 8e-60 MKIKINKLVTLLSIASTGLMLSAGHNLTLTHKANATEISATKDIRTQTLGIKNYKLESLD FISGNQAIIELNNNHASLNPNDWQEHKIIYKHIDQFNRATGAKTAFLSKANIDLLSKGRV KQYINPSGWHPNLPDQQIYNRGHFIAYSLSKGIDKMGKYSPNLQRGDQNNRKNLFTQTDF SNKALQTIFEDKVRTALMQDKKVIYQAKPIFRGSELMARGVHLQAISTDKSLDFNVYIFN VQPGYQFDYQTGRVAVDKDMYVSFNNQKFNNFDYYHAKVKQLNDQTFIHKISHSKIYIFF KEKLNALLQYN >gi|311092338|gb|AEKJ01000008.1| GENE 82 80274 - 82988 2507 904 aa, chain - ## HITS:1 COG:lin2460 KEGG:ns NR:ns ## COG: lin2460 COG1511 # Protein_GI_number: 16801522 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 12 887 14 898 927 403 31.0 1e-112 MKKIKQKLSQHNLVFIIMFAVAILAPVLYSLSFIKSVWDPYAGAKNLPIAVVNNDQAVNY NNKKLAVGDKIVSQLKHNKQMKWLFVTEEEAKKGLQNRKFYTVVTIPNDFSKNATTVLTS HPQKMKLYYKTNDSLNYLGSTMSDMALIRLNGKVRSSVTKAYANAMFDQLRILGKGMHKA ANGAKQISTGMISLQDGSKKYVAGVSKISKGMQILRVSVQPLATGSKKLVEGSSKLYTGI NKYTNGVSKLYLGSEKLIDATPILTQGINEFNTGLFAYTSGVGRLSSGLSKLSANSYRLR AGGRSLLTASDNFDLLNVGSQKVNAGVSAFNSKLSDSNLLGTLNGALSLQGQVFQLESQL ATVQETLKVLKSLDLLSIVKSMADIKQYAENLSQAKNIDQAINYSDQNATKADKIAQLVN SESQINESTKQKILGLVKDIKTNAQAGNASLEAYVGESVVPLLLSLEGMQSKLSPAQLQG LSSQIANIESALVGAKKLLSETKGLLSKVSDNKDMLNNMPDKLKKLSAATSQIAAGTQQL VDSKSKIKQLVSGIDEYTDGVDMAMSGAATLDANSAKLLSGFDKLKLGFSQYAGGIVQIN GGLKLLDLNSKTLLSGSNQLNVALIQLNEKVPALLSGIDRLANGSSQLNSKSSILLQGIN KLRQGSGTLSDKLSQGADKLNSTQAADANSDMFSDPAELKHDTVSVVPNYGHALAPFIMA TALFIGVLILLVEFPANRRMTEITSYRSLILREFKLAIIACLGMVLVQNIILIASGLKVF NVVELFTICIAYTLAMLGIMQLLTFMFGRWGLLPGLLLFVLQIGGAGGMFPIEVTNSFFQ NIHQFLPMSYAIAGLRQAITSGLGTGYFMSNLMVLILLAIVAYVGLVIAIVYKFTNTATE TVTN >gi|311092338|gb|AEKJ01000008.1| GENE 83 83172 - 84083 637 303 aa, chain - ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 4 290 12 298 306 166 37.0 5e-41 MKQQKKLWIFLVIISCNLWGISGLCAKRVFDLSTQVSPITITQIRMLISGLFLLLLAQLT GKKPIKILYSRKNIIDIILYGLFGLIPIQLFYFIVVQKSNASIATILQFMGPFFIMFYMV VFEHQFLRRLDIVAALVAFMGIIFIATHGNFSKISLSPEVLFWGFLSALGVATNTLIPRP LLKRMDSVTLIAWSMIATGLMMLIAYPSQILIPKDSRVIILLVVIIILGTILPFYCMLNS LRYIKPSTASILDAFEPISATLGSVFVFNLILKPIDWLGTILVILAVIAICYQPKSKIKS IQK >gi|311092338|gb|AEKJ01000008.1| GENE 84 84547 - 85557 1266 336 aa, chain + ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 9 336 3 327 327 396 60.0 1e-110 MPLIIPKDYVPKLNIRDTEAAISIIRETFQDKLSTELTLQRMSAPMFVEKSTGLNDNLNG IERPVSFDIKNIPDDQIEVVHSLAKWKRFALKRYNFPMHEGLYTNMNAIRRDEDLDNFHS IYVDQWDWEKIIKKEERTEETLKNTVRKIFAAIKQTEQYVRKIYPGSIYRLPDQISFVTT QELENRWPELSPQEREDKIAEEQKAVFLMKIGDKLEKSGKPHDGRAPDYDDWQLNGDIIF WYEPLHCKLEVSSMGIRVSETSLKEQLIKANAQDREQLPFHKMLLNGDLPYTIGGGIGQS RLCMLLLAKVHIGEVQASIWPKEMADQCEKNNIHLL >gi|311092338|gb|AEKJ01000008.1| GENE 85 85921 - 87534 1000 537 aa, chain - ## HITS:1 COG:TM1256 KEGG:ns NR:ns ## COG: TM1256 COG1132 # Protein_GI_number: 15644012 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Thermotoga maritima # 67 536 74 543 577 79 21.0 1e-14 MRAVLKELNSKYKFEYFLFLGMNIINTCIETSNIFLEGMLINSLVYKADRISFIHNVVII IALNVIRLFLSFFINKIQILNYRKINIDVNDTIIKKLYSKDTLEVLKLDPIQTADRITED TNEILNFLFQTVNQIISIIISSIIIFIYIIKAKSNFFLFIMILLPAYIILYLILKPKIFK INLELRQVYNEYFSGFAEWLNRYVEIKGNKREEREYKRWKKTQASLLNITRRNFFLNLGM STGEIVLQLIFQLILFINGGLAVISGSMTIGSFSVLFQYFNQLLGQVDALFSILFYFESF RVAYMRIDQLMSIMNEVDGEIVITKVENIQVHNFNISLDAQKTLFSKNLTCSFNNSGLYV VRGRNGIGKSTFLRTITGLYTPAKKGTILINNIDIDLINKKKLREDNISCLFQDTILPNC VVREYLDMYVNESNENCISGYQYFQKVFSSSQFNIKKVLDKKMTELSTGEIQLVKLYATI LKNKAHCFLLDEPLANIYPELQSDVLSLLNEIAQNNLVIIISHDLGIEEKTKNIRIR >gi|311092338|gb|AEKJ01000008.1| GENE 86 87833 - 89215 1190 460 aa, chain - ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 457 1 453 459 473 56.0 1e-133 MQNNSKKIQLKRSMTAGQMEMISLGGAIGVGLFMGSTSTIKWTGPSVLLAYMLVGLILYI VMRALGEMLYVNATTGSFADYATHYISPLAGYLAEWSNIFEYIMVGISEVVAVTEYLKYW WPKTPTWIAGIIVIVFLVLANLASAKAYGTLEFWFSMIKVITIVLMIVVGLAVILLGLGN KGVPIGFSNLWSHGGFFAHGIKGFFFSLAIIVGSYEGIELIGISAGEVMDPHKAVVKSVK SVLWRILIFYVGAIFIIVCIYPWNELKAIGSPFVETFTKVGIPFAAGFINFVILTAALSG ANSGIYSSSRMLFRLAHEGHAPKFFGKVSKRVVPNKAILGISAGILIGFILNLIFSTISK SASSLFVLIYSSSVLPGMVPWFVILIAELKFRKENPKQMAQHTFKLPLYPYSSYFAFSML FLIIIFMFINPETRLSVIVGAAVLLFATILYFIRKKKIVK >gi|311092338|gb|AEKJ01000008.1| GENE 87 89439 - 89798 463 119 aa, chain - ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 118 12 129 135 113 48.0 1e-25 MVQSINTKSEYHVDATWFRGMSVYGQVLIGDVGFEFYSSKNVNDFVQIPWTEVKLVIADV YFKGRYIPRFKIQTRNSGDFIFATRHPKDTLRAIRKHVLDEKMRKSRTFWQIIKNFLKR >gi|311092338|gb|AEKJ01000008.1| GENE 88 89800 - 90729 1217 309 aa, chain - ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 8 309 4 303 303 433 73.0 1e-121 MSETAKNKIILSKKDRWNVCWRSTFLQGSWNYERMQNGGWVYSLIPALRKLYPNKEDLSA ALKRHLEFFNTHPYLAAPVIGVTLALEEEKANGAKVENAALQGVKVGMMGPLAGVGDPVF WFTVRPILGAIGASLACAGNILGPILFFVVWNAIRIGFLWNTQEMGYKAGTKITEDASGG LLQKITRGASMMGMFVLGALIERWVNISFKPIVSSVKLAKGAYIDWNHISSGAKGIHQVL TQWNMGKGLSLEPIKVTTLQGNLDSLIPGLAGLLLTFLCMWLLKKKVSPIAIILGIFVVG VLGHVVGLL >gi|311092338|gb|AEKJ01000008.1| GENE 89 90754 - 91548 1059 264 aa, chain - ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 264 1 268 268 263 69.0 3e-70 MNAIQMILVVVVAFLAGMEGILDQFQFHQPLVACTLIGLVTGNLELGLLLGGSLQMIALG WANIGAAVAPDAALAAVASTIILIQGGQGSKGIGAAIGIAIPLAIAGLFLTMIVRTISVA IVHIMDKEAEKANWRAIDVWQCVAIALQGLRIAIPAALLLFIPASVVKAGLAAMPAWLND GMSIAGGMVVAVGYAMVINMMASREVWPFFVIGFCVAALQGLTLIALGGIGVSLSIMYLA LEGSGSKSSNNGSGDPLGDILDNY >gi|311092338|gb|AEKJ01000008.1| GENE 90 91576 - 92565 1195 329 aa, chain - ## HITS:1 COG:CAP0066_2 KEGG:ns NR:ns ## COG: CAP0066_2 COG3444 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 163 329 1 168 168 202 58.0 1e-51 MVGIVLASHGGFADGIFQSAEMIFGKQENLAHVILKPDEGPDDIRKKMEDAIASFDDSEQ VLFIVDLWGGTPFNQANNLVKEHEDTWAIVSGMNLPMVVEALGQRLASNNAHDIAKAIVK PGRDGIKTKPESLMPVEKAESNVSAKHQVAIPEGTVIGDGHIKYLLARIDSRLLHGQVAT SWTKSLAPNRIIVVSDSVSKDKIRKTMIREAAPSGVPANVVPIDKMLEVTKDTRFGGTKA LILFENPEDALRAIKGGMDIKTLNIGSMAYSAGKVNVNTVLAMDQKDVDAYRELEKLGVS FDVRKVPADNKQDMNELLNKAQKLINEQK Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:26:18 2011 Seq name: gi|311092337|gb|AEKJ01000009.1| Lactobacillus iners LEAF 2062A-h1 contig00093, whole genome shotgun sequence Length of sequence - 695 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - LSU_RRNA 1 - 471 94.0 # CP000413 [D:479701..482332] # 23S ribosomal RNA # Lactobacillus gasseri ATCC 33323 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:26:52 2011 Seq name: gi|311092221|gb|AEKJ01000010.1| Lactobacillus iners LEAF 2062A-h1 contig00048, whole genome shotgun sequence Length of sequence - 120639 bp Number of predicted genes - 115, with homology - 115 Number of transcription units - 45, operones - 27 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 7967 - 8425 349 ## gi|325912953|ref|ZP_08175327.1| Gram-positive signal peptide protein, YSIRK family - Prom 8614 - 8673 13.5 + Prom 8555 - 8614 5.7 3 2 Tu 1 . + CDS 8813 - 10315 1335 ## HMPREF9243_1360 hypothetical protein + Term 10325 - 10359 2.0 4 3 Tu 1 . - CDS 10506 - 10742 126 ## gi|259501345|ref|ZP_05744247.1| stage V sporulation protein K - Prom 10894 - 10953 5.9 + Prom 10507 - 10566 6.9 5 4 Op 1 . + CDS 10797 - 11459 523 ## COG1418 Predicted HD superfamily hydrolase 6 4 Op 2 . + CDS 11449 - 12603 1123 ## COG0499 S-adenosylhomocysteine hydrolase + Prom 13183 - 13242 6.7 7 5 Op 1 . + CDS 13278 - 14666 1146 ## COG0477 Permeases of the major facilitator superfamily 8 5 Op 2 . + CDS 14669 - 15331 601 ## COG1418 Predicted HD superfamily hydrolase + Term 15367 - 15415 6.4 - Term 15355 - 15403 10.2 9 6 Op 1 . - CDS 15414 - 16160 936 ## COG1794 Aspartate racemase 10 6 Op 2 . - CDS 16184 - 17743 1540 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 11 6 Op 3 40/0.000 - CDS 17778 - 18959 916 ## COG0642 Signal transduction histidine kinase 12 6 Op 4 . - CDS 18949 - 19719 853 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 13 6 Op 5 9/0.000 - CDS 19670 - 20716 709 ## PROTEIN SUPPORTED gi|229879751|ref|ZP_04499249.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 14 6 Op 6 20/0.000 - CDS 20736 - 21263 270 ## PROTEIN SUPPORTED gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase 15 6 Op 7 . - CDS 21247 - 21984 439 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 16 6 Op 8 . - CDS 21998 - 22645 614 ## COG3884 Acyl-ACP thioesterase 17 6 Op 9 2/0.364 - CDS 22727 - 23581 762 ## COG0313 Predicted methyltransferases 18 6 Op 10 . - CDS 23584 - 23886 394 ## COG4467 Uncharacterized protein conserved in bacteria 19 6 Op 11 . - CDS 23953 - 24810 919 ## COG2812 DNA polymerase III, gamma/tau subunits 20 6 Op 12 . - CDS 24827 - 25516 670 ## COG0125 Thymidylate kinase 21 6 Op 13 . - CDS 25528 - 25761 157 ## gi|259501362|ref|ZP_05744264.1| conserved hypothetical protein 22 6 Op 14 23/0.000 - CDS 25758 - 26357 558 ## COG0353 Recombinational DNA repair protein (RecF pathway) 23 6 Op 15 30/0.000 - CDS 26357 - 26686 649 ## COG0718 Uncharacterized protein conserved in bacteria 24 6 Op 16 2/0.364 - CDS 26732 - 28483 2051 ## COG2812 DNA polymerase III, gamma/tau subunits - Prom 28509 - 28568 8.6 - Term 28495 - 28533 7.2 25 7 Op 1 . - CDS 28665 - 29111 623 ## COG0590 Cytosine/adenosine deaminases 26 7 Op 2 . - CDS 29160 - 29774 558 ## COG2813 16S RNA G1207 methylase RsmC 27 7 Op 3 . - CDS 29820 - 30449 560 ## FI9785_1632 hypothetical protein 28 7 Op 4 . - CDS 30472 - 30933 322 ## LGAS_1706 hypothetical protein - Prom 30999 - 31058 11.0 - Term 31033 - 31069 4.0 29 8 Op 1 12/0.000 - CDS 31234 - 31686 609 ## COG3610 Uncharacterized conserved protein 30 8 Op 2 . - CDS 31688 - 32497 964 ## COG2966 Uncharacterized conserved protein 31 8 Op 3 . - CDS 32463 - 32867 279 ## FI9785_1641 hypothetical protein - Prom 33010 - 33069 6.8 + Prom 32864 - 32923 11.4 32 9 Tu 1 . + CDS 33022 - 33621 711 ## LGG_02225 hypothetical protein + Term 33627 - 33660 4.0 - Term 33615 - 33648 4.0 33 10 Tu 1 . - CDS 33653 - 34756 1128 ## COG1316 Transcriptional regulator - Prom 34842 - 34901 8.6 + Prom 34590 - 34649 7.9 34 11 Tu 1 . + CDS 34897 - 36696 2003 ## COG1164 Oligoendopeptidase F + Term 36706 - 36749 6.3 + Prom 36725 - 36784 6.5 35 12 Op 1 10/0.000 + CDS 36829 - 37824 1100 ## COG2376 Dihydroxyacetone kinase 36 12 Op 2 9/0.000 + CDS 37837 - 38421 580 ## COG2376 Dihydroxyacetone kinase 37 12 Op 3 . + CDS 38418 - 38786 433 ## COG3412 Uncharacterized protein conserved in bacteria - Term 38792 - 38839 11.5 38 13 Tu 1 . - CDS 38841 - 41186 2471 ## HMPREF0421_20608 hypothetical protein - Prom 41254 - 41313 9.0 - Term 41341 - 41380 8.2 39 14 Tu 1 . - CDS 41412 - 42284 942 ## COG2017 Galactose mutarotase and related enzymes - Prom 42366 - 42425 5.6 - Term 42300 - 42350 5.5 40 15 Op 1 . - CDS 42468 - 43145 760 ## FI9785_565 hypothetical protein 41 15 Op 2 4/0.091 - CDS 43158 - 43733 911 ## COG0698 Ribose 5-phosphate isomerase RpiB 42 15 Op 3 2/0.364 - CDS 43751 - 44179 593 ## COG0698 Ribose 5-phosphate isomerase RpiB 43 15 Op 4 . - CDS 44189 - 44947 784 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 44988 - 45047 5.9 44 16 Tu 1 . - CDS 45065 - 46057 1110 ## COG3684 Tagatose-1,6-bisphosphate aldolase - Prom 46092 - 46151 8.8 - Term 46089 - 46132 0.4 45 17 Op 1 8/0.000 - CDS 46158 - 47561 1472 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 46 17 Op 2 13/0.000 - CDS 47630 - 49321 1359 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 47 17 Op 3 . - CDS 49326 - 49637 366 ## COG1447 Phosphotransferase system cellobiose-specific component IIA - Prom 49840 - 49899 8.8 - Term 49905 - 49951 8.2 48 18 Op 1 3/0.091 - CDS 50054 - 51052 873 ## COG1609 Transcriptional regulators 49 18 Op 2 . - CDS 51054 - 52727 1337 ## COG0366 Glycosidases 50 18 Op 3 4/0.091 - CDS 52724 - 53146 469 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 51 18 Op 4 13/0.000 - CDS 53161 - 53997 865 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 52 18 Op 5 13/0.000 - CDS 53990 - 54796 843 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 53 18 Op 6 . - CDS 54799 - 55290 739 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 55393 - 55452 7.7 - Term 55502 - 55533 3.4 54 19 Op 1 11/0.000 - CDS 55560 - 58628 2244 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases - Prom 58650 - 58709 4.8 55 19 Op 2 2/0.364 - CDS 58728 - 59933 577 ## COG0732 Restriction endonuclease S subunits 56 19 Op 3 . - CDS 59946 - 60935 375 ## COG0582 Integrase - Prom 61018 - 61077 4.5 + Prom 60977 - 61036 4.5 57 20 Tu 1 . + CDS 61106 - 61693 302 ## COG0732 Restriction endonuclease S subunits 58 21 Op 1 27/0.000 - CDS 61690 - 62226 221 ## COG0732 Restriction endonuclease S subunits 59 21 Op 2 4/0.091 - CDS 62216 - 62542 415 ## COG0286 Type I restriction-modification system methyltransferase subunit 60 21 Op 3 . - CDS 62527 - 63723 1313 ## COG0286 Type I restriction-modification system methyltransferase subunit - Prom 63758 - 63817 6.3 - Term 63895 - 63934 3.5 61 22 Tu 1 . - CDS 63955 - 65514 1659 ## HMPREF0421_20066 perfringolysin O - Prom 65556 - 65615 6.6 + Prom 65470 - 65529 8.8 62 23 Tu 1 . + CDS 65716 - 66192 713 ## FI9785_192 hypothetical protein + Term 66214 - 66254 1.4 - Term 66259 - 66315 11.1 63 24 Op 1 25/0.000 - CDS 66321 - 68057 2059 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 64 24 Op 2 . - CDS 68057 - 68323 415 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 68376 - 68435 5.5 65 25 Tu 1 . - CDS 68451 - 68624 319 ## FI9785_1388 hypothetical protein - Prom 68717 - 68776 7.3 + Prom 68609 - 68668 5.4 66 26 Op 1 . + CDS 68755 - 70896 1587 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 67 26 Op 2 . + CDS 70951 - 71229 324 ## LJ0814 hypothetical protein + Term 71258 - 71297 5.2 - Term 71325 - 71376 7.5 68 27 Tu 1 . - CDS 71412 - 72293 1032 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs - Prom 72324 - 72383 10.8 - Term 72343 - 72379 3.0 69 28 Tu 1 . - CDS 72396 - 77579 5765 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases - Prom 77611 - 77670 7.4 - Term 77653 - 77690 3.3 70 29 Op 1 . - CDS 77702 - 79024 1424 ## COG0773 UDP-N-acetylmuramate-alanine ligase 71 29 Op 2 2/0.364 - CDS 79059 - 79703 851 ## COG0073 EMAP domain 72 29 Op 3 . - CDS 79728 - 80048 406 ## COG0526 Thiol-disulfide isomerase and thioredoxins 73 29 Op 4 . - CDS 80067 - 80717 780 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 74 29 Op 5 7/0.000 - CDS 80729 - 81925 985 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 75 29 Op 6 . - CDS 81909 - 82658 264 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 82689 - 82748 8.4 + Prom 82588 - 82647 8.9 76 30 Op 1 . + CDS 82749 - 83186 577 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 77 30 Op 2 . + CDS 83198 - 83509 479 ## gi|259501418|ref|ZP_05744320.1| hypothetical protein HMPREF0520_0928 + Prom 83511 - 83570 6.5 78 30 Op 3 . + CDS 83600 - 84493 928 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 84516 - 84552 3.2 - Term 84504 - 84540 2.2 79 31 Op 1 3/0.091 - CDS 84619 - 85596 1099 ## COG3481 Predicted HD-superfamily hydrolase 80 31 Op 2 5/0.091 - CDS 85598 - 87991 2251 ## COG4717 Uncharacterized conserved protein 81 31 Op 3 . - CDS 87978 - 89201 1064 ## COG0420 DNA repair exonuclease 82 31 Op 4 . - CDS 89211 - 89561 424 ## lhv_1666 hypothetical protein 83 31 Op 5 . - CDS 89581 - 91659 1866 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 91719 - 91778 9.2 + Prom 91639 - 91698 9.6 84 32 Tu 1 . + CDS 91720 - 92598 839 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 92611 - 92651 -0.0 - Term 92592 - 92645 12.1 85 33 Op 1 . - CDS 92684 - 93598 1115 ## COG0191 Fructose/tagatose bisphosphate aldolase - Prom 93624 - 93683 5.0 - Term 93621 - 93664 0.5 86 33 Op 2 . - CDS 93694 - 95370 2060 ## COG0018 Arginyl-tRNA synthetase - Prom 95550 - 95609 9.0 - Term 95383 - 95422 5.4 87 34 Op 1 . - CDS 95632 - 96909 1102 ## COG1686 D-alanyl-D-alanine carboxypeptidase 88 34 Op 2 . - CDS 96893 - 99178 2267 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 89 34 Op 3 . - CDS 99182 - 100051 342 ## PROTEIN SUPPORTED gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 - Prom 100157 - 100216 80.3 + TRNA 100132 - 100215 57.7 # Leu CAG 0 0 - Term 100120 - 100187 30.2 90 35 Op 1 . - CDS 100427 - 100708 432 ## gi|259501431|ref|ZP_05744333.1| toxin-antitoxin system - Prom 100766 - 100825 5.8 - Term 100826 - 100871 9.8 91 35 Op 2 . - CDS 100883 - 101047 200 ## gi|309808153|ref|ZP_07702065.1| hypothetical protein HMPREF9211_0065 - Prom 101084 - 101143 2.0 92 36 Op 1 . - CDS 101162 - 101374 302 ## gi|312870850|ref|ZP_07730955.1| hypothetical protein HMPREF9219_0988 93 36 Op 2 . - CDS 101452 - 101664 196 ## gi|309808145|ref|ZP_07702057.1| conserved domain protein - Prom 101699 - 101758 2.8 94 37 Op 1 . - CDS 101765 - 102175 316 ## Mahau_0569 hypothetical protein 95 37 Op 2 . - CDS 102221 - 102721 427 ## SSUST3_0457 hypothetical protein 96 37 Op 3 . - CDS 102631 - 102924 133 ## LJ1455 Lj928 prophage antirepressor - Prom 102956 - 103015 4.0 97 38 Tu 1 . - CDS 103146 - 103325 182 ## LM5578_p11 phage transcriptional regulator, Cro/CI family - Prom 103379 - 103438 6.8 - Term 103469 - 103504 3.1 98 39 Tu 1 . - CDS 103605 - 103778 120 ## gi|309803446|ref|ZP_07697540.1| conserved domain protein - Prom 103860 - 103919 2.9 99 40 Op 1 . - CDS 103938 - 104087 153 ## gi|309803455|ref|ZP_07697549.1| hypothetical protein HMPREF9214_0100 - Prom 104116 - 104175 3.9 100 40 Op 2 . - CDS 104177 - 104353 185 ## gi|312870862|ref|ZP_07730967.1| conserved hypothetical protein - Prom 104478 - 104537 7.4 + Prom 104438 - 104497 8.3 101 41 Op 1 . + CDS 104521 - 105189 548 ## COG1396 Predicted transcriptional regulators 102 41 Op 2 . + CDS 105263 - 105982 732 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) 103 41 Op 3 . + CDS 106025 - 106342 400 ## SPJ_1901 cI repressor 104 41 Op 4 . + CDS 106369 - 107685 1230 ## COG1396 Predicted transcriptional regulators 105 42 Op 1 . - CDS 108070 - 108774 752 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 106 42 Op 2 . - CDS 108846 - 109034 73 ## gi|259501441|ref|ZP_05744343.1| hypothetical protein HMPREF0520_0951 107 42 Op 3 . - CDS 109051 - 110616 1713 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 108 42 Op 4 . - CDS 110635 - 110943 409 ## lp_3600 galactitol PTS, EIIB (EC:2.7.1.69) 109 42 Op 5 . - CDS 110961 - 111431 583 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Prom 111577 - 111636 7.9 + Prom 111498 - 111557 8.9 110 43 Tu 1 . + CDS 111594 - 112358 556 ## COG1349 Transcriptional regulators of sugar metabolism - Term 112385 - 112431 3.1 111 44 Op 1 . - CDS 112503 - 113069 683 ## COG0406 Fructose-2,6-bisphosphatase 112 44 Op 2 . - CDS 113093 - 114721 1530 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 113 44 Op 3 2/0.364 - CDS 114743 - 117157 3037 ## COG0495 Leucyl-tRNA synthetase - Prom 117380 - 117439 7.9 - Term 117168 - 117206 5.4 114 45 Op 1 4/0.091 - CDS 117443 - 118909 1420 ## COG0477 Permeases of the major facilitator superfamily 115 45 Op 2 . - CDS 118902 - 120107 1706 ## COG0192 S-adenosylmethionine synthetase - TRNA 120235 - 120307 86.4 # Val TAC 0 0 - TRNA 120312 - 120383 62.4 # Glu TTC 0 0 - TRNA 120483 - 120572 47.7 # Pseudo GGA 0 0 Predicted protein(s) >gi|311092221|gb|AEKJ01000010.1| GENE 1 2 - 7970 9918 2656 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_1196 NR:ns ## KEGG: HMPREF0424_1196 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: G.vaginalis # Pathway: not_defined # 1254 2451 738 1899 3173 89 22.0 2e-15 MTEAQRKDLTQAVQSLKQQIEGLKTEDKKAVEEIVAAYIGAQAVLSDVNVNQTVGHAALE SLKRTQSLAKQLVTLSHFQSRSAQTGDKYDVSDILNRASEHLRQERSIGQTRGNREYNEK LLGSYTELGGGGSGYDLYTQIFRNKRNGLFGQDPNFDGMNIANAEKDVWARVTPLEDGSG YFWEINFNLGRNEHQHPKYFFTVPKNQKITKATVVYRENDDKYKTFAANGENALKTIFRD DIKRIEDTQAEFSDNLNKTPGDDGNFASLVYPANNGKWVDQYEITDPKMHPEWKDRLDQD AKRRDQLINKIKDNSQTVYFIQPHNGKNGYSIRFETKGPLERDKNTRKYYLAGFRSQEYN TYNLTLQMYGRLDSDISVIEKYPLHVRRNGRFYINQGKAINCDNVYRLKENGQKVDFSFW GDIDKAKREGKYKPGDFGKFSDAKGEDLIDSGYMVLNGGKNGQDAHSDIGKLDLNRYLAG EHSDSWKAPSGKAKWGEGDLTWTVYDNKGHEHLLSDANTPGVNHFQFKRMQTVNGKTETE LYNIMFVIKPKTPSLSQEERVGKRLPLKLTNAAGTYKNLVASNGTKGVPMVLYKNVNGRF EPMQEEYKETVTETTYNDQGKPTTIKKQVTKKRDLQVLANDKGEAVFKNILIEDGATYAV KTVVYEKQEYIDQDGSTKQKVESDLSDEHSAKIYTPTLAETEKTAVNDAVNVQKNDKDNL LTPEEANEITTKIINNLKAKFGKDYDKEVEKVQVITKKVERNKNAFPEAYDAHKLLGNQD TAEAGDAFIWYRDGGVVKITRDLTIRMKPAEVKPLEGNSVQAGATKIKLANFATGAEGIT IFGKEFKQSQLKLKNGKWTIDSAHNAAGIQSVDKNADGTLTVTFNESLNQGTTIITQVTD GNDDKKPFRSEVKQAAVVARTDKATYPQQVTAGVSQWNKDTKKLTDEAKKKVIADLEQKI TGLNGNVKVTINDQLISLGDTHFISVNATYPDGNQDSHSVQLILTDDVPAKVTMKATDNK VTVQNQVITVQANQAFSFQASAVDEHSHVVHDVRTENRPSWLNSNEGTVQSDYNKATNKK RNTKGSDKVPYVVTLSGTAPMKPGTHVFTVKTWDGANPENSGSQQVTLKVEARPLTGATQ TVEVNDTNALSKLTPESFVPQNVKTGLGNGVTYTWNNGKAPTNATINTTGQTVEIQATFA DHSPSTTIQGKLIVQDTKLAQLDVVAEKGAKVEHGTAVQTVATNVQNFPGNPPTLTTYVN EPMIVHVKVKDNSNKITDAKLNGNSSFVQSDDREYQKNNRAKKGSAKDPYTITFTGTPTT KGTKNTRIDTWDGANTQGWVPLNIVTKEQAAQFDGQAVSGDTQRVEVNASTADLKPENFV SAATKALYKKATGGVTYTFTQGKLTNNTVTSGQGQDVSITATFSDHSTRTITGKLVVFDQ TNPTADITVSSTALGQAPHIEDKNGVKEVHVYGTEDFTIKVQAHDNSGKVAEIALVQNGK PGSYPFPLTQQTSGVGSSAQPKVLTLTGATGKNTNNQSDSTQLSEGAQWNNRAIQVKDGS NHTTIINLRVINHQQTTKYDPQVQAVTVKASTKALPEAKSAISNVKSLPNGAQYTWVNGS PVTQSGKRQVKVTYPDGSSDTVNVTVTYQDDVAPTITFPTSHTYEGVAVTHFYRGEPVDI TIHATDADSNMKKLWLSNGDMHRTERQIGEDIKGLNVQSQLNGKNASYHITGTVPTDFAD RYTVGNNQAVGAKKFTRLFNAEDQNGNQSAIDNSTKFMYIVHERAEKYKASYGKLPITVG TKSASQSSIEFKDISKGRLFAGEVANSSYKAVEKTVDKPNGTTFTLMNPVDGVQIDSTTG KLTLQGQAKQVGKTIPIQVKVTYSDKSFDIVDVSMKIRDDIPADVQYEAGKGSQVNGTTV TVYANEAFEFKANVTDNTGIVYDAEYNGDNLSWLNNDKQTYQAKYKQDTGGKRNTLGSKE HPYVLTFTGTAPNVKNTTNQGKIRTWDYQDANSGAESGFTLVVKSQSENYTDHSDLKSKL QGTSQDVEVNNEHPVQPNAEQSVSQATKEMLKDKGVTYSWKTNHVPDTRTVGEKTGIVVV TFKDGSTLDISNAKVNVKDTVNPVITGWSISSDWKGKQPKIEDKNGVKEIHVYGTENFTL TVKATDNSGLVQSIGVVHNGKAGTLGFKTNDTLTGTGTTADPKQLTMTGATGPNIKDKDG YSNRTFKVTDAAGNSVEQQFKIVVHQQTTKYEATVAAGAIEKDYGATLTEEEIKAKVSVP QYSQGKPAYQVSLAGQLPSTTSAGNHQVDVKVTYPDGSTDIVQVPVSIKAQPQKDAYELT YAPEQVEPGKSLTTQVPTLKKGNETIVSKTGIVTSYSIAEDLKTKGYSVTNEGRLTIPAS ESATKVGQKLAIAVQVTYHDGTTENTIAQVSVMSPNKIDRTNDKNAPIPSGYLRVTLQAG EGTIYHGDAQAKTYDVKVNTALEPADYPQVKSQTNYRPYQWSVAAGTVITETMDPDKNNQ VTIESTATLKTAVTIEPRYGTEKGTIGETIIIGSPTFYKENNGQVTTDVAQGLDRRMQYT LDKANDHVTIDASTGVIHYTPIASELNGKDEETVTIPVTVTYDDRSIDKVNVTVTIKRAT SAEPTVSTVHTQSKEI >gi|311092221|gb|AEKJ01000010.1| GENE 2 7967 - 8425 349 152 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325912953|ref|ZP_08175327.1| ## NR: gi|325912953|ref|ZP_08175327.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners UPII 60-B] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners UPII 60-B] # 1 89 1 89 2795 167 100.0 2e-40 MFGKNNKKMRDLEQREKVTYYGIRKFTVGVVSVAISAAFLLSGQTRYVLADEQPAIESRN NKQLVISKQEHADDGVNSKANNTQSVSKQLIHNWSLDKQIKFHLEHKSKKLHLLRKSIQI KRNQQRSKQIVLPIKRRLINLKRMKKVAPQKG >gi|311092221|gb|AEKJ01000010.1| GENE 3 8813 - 10315 1335 500 aa, chain + ## HITS:1 COG:no KEGG:HMPREF9243_1360 NR:ns ## KEGG: HMPREF9243_1360 # Name: not_defined # Def: hypothetical protein # Organism: A.urinae # Pathway: not_defined # 191 494 1 306 312 90 26.0 2e-16 MFELLPKSIQRKLNLIAYLLDHPTSPPSIHFLMDYLNITYPTLKHDISELNELFDQYFNI TITKTQISLKAFVPLSMAFFTYMLKQDLTIMSLINECFLQHINTFKALAQKIYISRSVMY HDLTQLKDFITNHYSALSITTHPVQITGPERIVRQFFTDYYFLGYNLSNWPFDQVSQSAI EDLMLLIAEKIPLIAFFSDHPILPIILAINVIRYRQGHLVEDIRPAYDYDACRRYLSDPI NHDHLHNLEDRLGITFSNEAVEQLLVNIISHQTSYDTHYMWQCAQTDPTLHQALITLKSD MLSLMHAFHIQSIDEEALDLFLLTAYNLCTFHSTDSNSFEEEIYQHEQDCLAVGTELERI DPHFLTQMQRILTAFQEQMHIPCNDTRTLQATWYYCHIFPQTLRQLKTPTQPIRLGLYTI NQLQRKHWAYEINLLFGDKIQLVSIHSPNSLLHLEANQVDALLTALPIELKQIKTRYISG YPSGQDVEWIYQLLFPSSDS >gi|311092221|gb|AEKJ01000010.1| GENE 4 10506 - 10742 126 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501345|ref|ZP_05744247.1| ## NR: gi|259501345|ref|ZP_05744247.1| stage V sporulation protein K [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9218_1048 [Lactobacillus iners LEAF 2062A-h1] stage V sporulation protein K [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9218_1048 [Lactobacillus iners LEAF 2062A-h1] # 1 78 5 82 82 139 100.0 8e-32 MLQRFIFFLPLYHIIDEAYALTPDGQNSFKQEAIDRLITLSDELRNDIVIILDGYSQPMK KILQANDWLSVVFLLILY >gi|311092221|gb|AEKJ01000010.1| GENE 5 10797 - 11459 523 220 aa, chain + ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 3 213 7 210 215 142 39.0 6e-34 MSLDDIKSFSKENMAFDPSGHDFLHAQRVAKLAQKIYTEDFKKDATDIGLYVVKAASYLH DTIDEKVTTDKKNRLREIRIILSHENITTPAREDILDIIQHMSYADNIEHHYQLSNEGKC VQDADRLDALGAIGIARAFAYGGHAGQEIYDPKILVKEIKTHDDYRHHKSTTINHFYEKL LKLASLMNTRTGNLEAIRRTKYMRDFLSEFQMETGVKDET >gi|311092221|gb|AEKJ01000010.1| GENE 6 11449 - 12603 1123 384 aa, chain + ## HITS:1 COG:PA0432 KEGG:ns NR:ns ## COG: PA0432 COG0499 # Protein_GI_number: 15595629 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylhomocysteine hydrolase # Organism: Pseudomonas aeruginosa # 100 269 132 293 469 64 31.0 4e-10 MRHNEYLLDKSYFEKVATLFNKGQSNPKKLLVVEHAVINSLDFIDYLCEHYEVYFIPKPK SIDRKVLKHLSKTCTILDVSRKELADVDTPNWIKKIVGKDTFAIIDIGGYFVPRLSDIQK QFKGQLVKIIEDTENGYQKYEDKLSNNSISVPILSVARSSLKIEEDFLVGHEIVVKSEIF LADYGTTLLGKKALVIGYGKVGSSIADNLRKRGAIVIVADKRAIRLANALAHGYQITNDI YTELIDIDIVYIANGEKSIDALQLKKLDLKHTLYSFSVTSADDTFKNSQIINELPHYGHN GGYRILKTKSNKTVILANSGNAINFTYSISTLASYVQLTQAEMAVILQKDISGEENQGIV ELNENDREKIAKEWLVEIFKFVKS >gi|311092221|gb|AEKJ01000010.1| GENE 7 13278 - 14666 1146 462 aa, chain + ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 443 1 436 454 221 36.0 3e-57 MFQEKHSKLLSAIISIGLLSFLGIVVETALNITFPQLTKYFSIPINQVQWLTTGYMLVST SLIPLGSFFLKRFRVVTLFRVSCLSFLVGTLIASFSNSFNLVLLGRLCQGIADGIALPLI FAVILHQVPKKKVGTFMGIGSLVIALAPAVGPIYGGIIQDTLNWHFLFIILIPMIIVTWL LGELSIEQSSPIHYVPFDVRGGICLTIFLSTALMFIVNLTANSSSLKFNLILLGTVFFSG LLFLLNEKNKSHKLLELALFKNKRFLQLLSAFFLLQFSSLSMSYLIPNVLQILFDQSPGL VGFLVAPAAVIDAVLSVVAGIIYDKTTPSLPIISGCTIIGLTFLGANLFTPSIGGLVLIY MLFMVGLSFSYSNIMTYSLSKLPAGLVNDGNSIYMTVQAYSGAVGIAISSSVVSLLQKQQ GSIISGTKLGLSINFLILFFVAVFTISLCLIALRNKVIKGDK >gi|311092221|gb|AEKJ01000010.1| GENE 8 14669 - 15331 601 220 aa, chain + ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 3 213 7 210 215 143 39.0 2e-34 MSLDDIKSFSKENMAFDPTGHDFLHAQRVAKLAQKIYTEDFKKDATDIGLYVVKAASYLH DTIDEKVTTDKKNRLREIRIILSHENITTPAREDILDIIQHMSYADNIEHHYQLSNEGKC VQDADRLDALGAIGIARAFAYGGHAGQEIYDPKISVKEIKTHDDYRHHKSTTINHFYEKL LKLASSMNTRTGKQEALRRTKYMRDFLSEFQMETDVKDEC >gi|311092221|gb|AEKJ01000010.1| GENE 9 15414 - 16160 936 248 aa, chain - ## HITS:1 COG:L92665 KEGG:ns NR:ns ## COG: L92665 COG1794 # Protein_GI_number: 15674208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Lactococcus lactis # 1 229 1 230 240 189 42.0 5e-48 MEHFFSIIGGMGTIATESYVRLINSRVKIKCDQDYLNYILVNDAQIPDRTAYIKDHTQPD FFPALRSDVLSQAQLKPDFFVMPCNTAHYYYNELASLTDVPFLHMMRIAIHNFIDNYPNE KKIGLIATEGSIYDHLYADELSKVGRQVEFGGPEIQPLVNELIYKNIKEKGIVDAQLFYK ILQLMHDKYGCHVILLGCTELSLAQEKASDHPYNVIDPQSIIADVTIDVALKIRQGIEPQ QALKKYMY >gi|311092221|gb|AEKJ01000010.1| GENE 10 16184 - 17743 1540 519 aa, chain - ## HITS:1 COG:L53929 KEGG:ns NR:ns ## COG: L53929 COG0769 # Protein_GI_number: 15673788 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 35 514 37 483 483 340 42.0 4e-93 MSESSISLNTCILILKEHHLLKSCATQDVVSTKMDYISYDSRDIKTNTLFFCKGKGFRPT YLSYAKENGAICYVAEQPYPEGKGMHALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGT KGKTTSAYFLKGILDKLNGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAV DNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVN SRKCIINAMTDHFDEIYAAATTTTNPDSIYLFARNDYDNPDLKRPIDFRFASVETDMCET KFKLYSETDAARNIPVEGNYSLKMIGDFNEINATAAIIGAGLAGVNYQDCYDGIKNVTIP GRMETLTTANHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFS ESLSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKEAKDD DVVLICGKGADPYQKIRGVDTPYPTDIKVAQEVINKLEN >gi|311092221|gb|AEKJ01000010.1| GENE 11 17778 - 18959 916 393 aa, chain - ## HITS:1 COG:CAC0565 KEGG:ns NR:ns ## COG: CAC0565 COG0642 # Protein_GI_number: 15893855 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 88 381 209 497 499 155 33.0 1e-37 MKYNSCDEEVTFLSKKEKIRLILEAVVTFGLLCLLNLSLLVLLNLLILGSSKFVDGILLF NNTLNNWNHLPFFAWQKVIINVIFVLELFVVYLRMMRRYHQFQMYHIIKELHYIADGHFN YRIPFKFKGPLQDVVDSINALVDSTCMAISEEKAVEKSKDELIANLSHDLRTPLTSIIGY MSLLKMHQNSMLPAQRQEYLNIVFDKSLQMKSMTNDLFEYATLNFSHDKKLELEQIKISS LIEQIAAGFALEAEKKQIDIKTSCEPQDLEIAVDVKKIVRMFNNLISNAVKYGVGAKNIY VSVKKISNDMVQIIVSNDGQAIPQDALGKLFDRFYRVEESRSPKTGGSGLGLAITKTIVE MHHGTIFCTSNQKLTSFIIDLPINIQKNNLDVL >gi|311092221|gb|AEKJ01000010.1| GENE 12 18949 - 19719 853 256 aa, chain - ## HITS:1 COG:lin2516 KEGG:ns NR:ns ## COG: lin2516 COG0745 # Protein_GI_number: 16801578 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 31 256 5 231 231 215 48.0 7e-56 MQIHHWNYLIQMNCTNNNFYERLKGKKLVKVLVVDDDKEIVELLSIYLKNENYDPVVACD GREALTKFRMDPSITCIILDIMMPEMSGLDLIKEVRKDSEVPILVVSARTKDLDKIQGLL TGADDYVTKPFNPLEVMARIRSLIRRSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVK INLTVLEFGILYLLASHPGRVFSANEIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAG SEVVQTVWGVGYKIEI >gi|311092221|gb|AEKJ01000010.1| GENE 13 19670 - 20716 709 348 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229879751|ref|ZP_04499249.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Slackia heliotrinireducens DSM 20476] # 8 342 440 781 781 277 45 1e-80 MTQKNIRILAYESSCDETSTSIVKNGTEIESLIIATQIKSHQRFGGVVPEVASRHHIEVI TQITKEALAQANCTWKDIDAIAVTYGPGLVGALLIGVSAAKAASMATNIPLIGVDHIMGH IMAAQLKDTIEYPALALQVSGGHTELVLLKSPIDFEIIGDTRDDAAGEAYDKIGRVLGVN YPAGKTIDTWAHQGQDTFKFPRAMLEDYDYDFSFSGLKSAFINTCHHADQINQNLDKYDL AASFQAAVVDVLAYKTMRAIKEFKPKTFILGGGVAANLGLRERLNREIAAINQDHQLKVI MPDLKLCGDNAAMIGAAAYNLYVAGQFSDLNLNADPSLELPYSDELYK >gi|311092221|gb|AEKJ01000010.1| GENE 14 20736 - 21263 270 175 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase [Lactobacillus acidophilus NCFM] # 1 175 1 178 190 108 38 1e-22 MLRKFKSLFCKSDINMTFNPMKVKINGLQYYLRKADSSDIVNILDLQYQLCPRPLCWNIK YLTTEITNPENIYLVLYCRQQLAAVLGLKMSSDEGHIAFIGVKLEYQFQGIGTLLLQQAI TLVQNNYIDKITLEVNVKNVHAQRIYRKMGFIPDSIRKNYYATLQEDAINMVLKL >gi|311092221|gb|AEKJ01000010.1| GENE 15 21247 - 21984 439 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 42 235 1 191 380 173 47 2e-66 MKVLSITTATDHLSVALTDGEQIIAEKNELGMHNHAERLDPLIDELLKQNQLTLQEIDRF AVAQGPGSYTGLRISITTAKMFASILNKPLVGVSTLKALAQGVTSNREILISELDARNLN FFAGVYLKEDGQLKQLLADGHYNLSKLLDKVAQLELDYPIVFVGSDITNYKSEIEAFFSP SQYRQAAAEENILHATNIGKLAVDEIAQDPDLFLPRYLRRTQAEMDWHRKTGKDFASDSE YVEEV >gi|311092221|gb|AEKJ01000010.1| GENE 16 21998 - 22645 614 215 aa, chain - ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 25 211 57 239 245 89 27.0 6e-18 MLISYMMDTMSHLLDPCIKIEHAGWVVVNYQFDINKLPKFDDQITIKIDLCYYNRFFAYI KFLVKDLQENELVTINSQWILFDLLSRRMIELDSAKVGISDAQKIAKLPHFDRIKVLAGQ EDFQRSYRVMYSDLDVNHHLTNGRYFDWIVNTIPRDFLNSHSMVAASIQFRKEILYDQSA VVTLTWNADHSVSYHTIKRDEQILTVAKISWVSDK >gi|311092221|gb|AEKJ01000010.1| GENE 17 22727 - 23581 762 284 aa, chain - ## HITS:1 COG:SPy0406 KEGG:ns NR:ns ## COG: SPy0406 COG0313 # Protein_GI_number: 15674543 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Streptococcus pyogenes M1 GAS # 1 282 1 285 287 263 48.0 3e-70 MQRQSSFNDETQGCLYLVPTPIGNLEDITLRAKRILMEVDYIAAEDTRTSGILLEKIGVH NKMISFHKYNSKQRAPELIALMKEGKKIAEISDAGMPVISDPGFILVQECIKNDIAVIPL PGPSAFATALIASGFDAQPFIYYGFLSRKATEQIAFFNKMATFTGTSIFYEAPHRLLKTL TNLQKVVGENREIVCARELTKIHEEFIRGSIGEITNYFAENAPRGEFVILLSPAKEEETI SIDQMLVEVNQAVASGMSNKDAIKNIAKKYNISKNELYDKYHQK >gi|311092221|gb|AEKJ01000010.1| GENE 18 23584 - 23886 394 100 aa, chain - ## HITS:1 COG:SP0937 KEGG:ns NR:ns ## COG: SP0937 COG4467 # Protein_GI_number: 15900817 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 5 86 24 102 105 64 39.0 5e-11 MTNTVENLEIEMLDILKENTELKVENQLLREKINKLDHKENNGSVKPQAGLKSLRNIYDS GYHICNMYYGSHRDQGEDCMFCLDILDNFVNHGNLSNRKK >gi|311092221|gb|AEKJ01000010.1| GENE 19 23953 - 24810 919 285 aa, chain - ## HITS:1 COG:aq_1855 KEGG:ns NR:ns ## COG: aq_1855 COG2812 # Protein_GI_number: 15606894 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Aquifex aeolicus # 13 171 26 184 473 103 37.0 3e-22 MVNLSNVDQQQTKILFDAYLHDKIAHAYLFIDPTGYTALATAYWLICLLNCTGEHKPDAN CNNCQRILNGNHPDVFLVEAENKKSLSIDQIRPLKEELAKKPVEGSRRFFIVKDASLLTL SANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHFAPTKQKSSVTADLLTYGL NEDEIADMGDVSNLEQEITYLYQELCQQNELSIVRAYKISKLAAKSNLQKFVFYKLAKIA MEKIEKNKDYLFAPKLLQLLMECDKMRTNNVSFYNCLNYIVLSFN >gi|311092221|gb|AEKJ01000010.1| GENE 20 24827 - 25516 670 229 aa, chain - ## HITS:1 COG:BH0042 KEGG:ns NR:ns ## COG: BH0042 COG0125 # Protein_GI_number: 15612605 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Bacillus halodurans # 16 224 1 208 210 199 47.0 2e-51 MGAFFAFYIKWQGWCVMKGYFISFEGPDGAGKTTIINELVQQLSSKTIAPILVTREPGGS KISENIRKIILDPKNKEMNAETEALLYAAARSQHVIETIIPALNAGKIVFSDRFIDSSLA YQGIGRDLGIDEIKQINEFATRHITPDLTLFFDIDPLKGLQRIQKVRPENEDRLEQENNL FHQKVYTGYKQLLSAYPERIKRVDAELSIAEVVSQSVKILEEYMPHMFK >gi|311092221|gb|AEKJ01000010.1| GENE 21 25528 - 25761 157 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501362|ref|ZP_05744264.1| ## NR: gi|259501362|ref|ZP_05744264.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_02750 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0019 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_1147 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0035 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0019 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_1147 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0035 [Lactobacillus iners SPIN 1401G] # 1 77 1 77 77 119 100.0 7e-26 MKNKEKIKELGDANLINKISELQIYLSNQRILNQTTVDLSEENRILDLILHAKYHFLYDE AKYRHARSKYSNSVITQ >gi|311092221|gb|AEKJ01000010.1| GENE 22 25758 - 26357 558 199 aa, chain - ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 199 1 198 198 264 61.0 1e-70 MQYPLPIAKLIDNFMKLPGIGEKTATRLAFYTLDMQDKDVEDFSQALIEAKKQIHSCSIC GNITDTDPCEICSNANRDQTIMMVVEQAKDVMAFEQMGEYNGLYHVLHGVLSPMDGIGPE EINIKNLIIRLQKSDEIREVILALNSTPEGESTAMYLGKLIKPSGIKVSRLASGLAVGSD IEYANSITLKRAVQGRISL >gi|311092221|gb|AEKJ01000010.1| GENE 23 26357 - 26686 649 109 aa, chain - ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 12 108 1 97 99 92 50.0 2e-19 MGRMPNLGGMGMGNMQNLIKQAKKMQQQMEAERESLNQTEFVGKSADDMVIATLTGDKKV KDLKIAPEAIDPEDPDMLQDLIIDAINKAISEVDVATEKTMGKYTKGLM >gi|311092221|gb|AEKJ01000010.1| GENE 24 26732 - 28483 2051 583 aa, chain - ## HITS:1 COG:BS_dnaX KEGG:ns NR:ns ## COG: BS_dnaX COG2812 # Protein_GI_number: 16077087 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Bacillus subtilis # 1 579 1 563 563 403 41.0 1e-112 MAYQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAK AINCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYY KVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISN DQLVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAI TGYADQVKIEALFLDLLNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDT TVTFLSANYLEQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQDINAT VSQTDAAEIKQLQTKVEQLSRQVAELLKKANTSAIAKPSEILTEIKDKVRPTKAVNQNVA TLKKKKTGLQLSTEANLKKVNVVLSQATKQDLNTIKDVWQQDMSSLLEVSQRALLEVLEP VAASPTQVVLKCKYEFWFERAMADENFISQLENNLEKLTQHKYQIVLVSENSWTTIRQEY VKKYKEHLIIAQKELASNPNEEVIKKAKSLFGDLVNVKDDSDL >gi|311092221|gb|AEKJ01000010.1| GENE 25 28665 - 29111 623 148 aa, chain - ## HITS:1 COG:BH0033 KEGG:ns NR:ns ## COG: BH0033 COG0590 # Protein_GI_number: 15612596 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Bacillus halodurans # 1 147 9 154 159 160 47.0 1e-39 MKLAFLEADKAEQQGEIPIGAVIVDAEGNLIGRGYNRRELDEDATRHAEIIAIQEACKNL NSWRLIDCSLFVTLEPCPMCAGAIINARLKNVYYGAFDPKAGACGSVVDLFAFTKFNHHP QIFGGLYREQAAQQLKNFFKNIRQQNRI >gi|311092221|gb|AEKJ01000010.1| GENE 26 29160 - 29774 558 204 aa, chain - ## HITS:1 COG:SP0841 KEGG:ns NR:ns ## COG: SP0841 COG2813 # Protein_GI_number: 15900728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Streptococcus pneumoniae TIGR4 # 5 204 2 196 196 195 52.0 4e-50 MENETQMYFATNPDAKHDEHLINYQLDELSLQFYTDAGVFSKTRVDYGSCVLLKVLKQLE ISGNILDVGTGYGPLGLFAAKLWPKSRVTMIDVNERALALAKRNAQLNEIDNVNIFSSDC YRNLDEQEQFGLILTNPPIRAGKQVVDDILQNAKKYLQVGGILLVVIQKKQGAPSARKCL EQTYGNCEILKRDKGYYILKSVNK >gi|311092221|gb|AEKJ01000010.1| GENE 27 29820 - 30449 560 209 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1632 NR:ns ## KEGG: FI9785_1632 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 205 1 205 208 233 52.0 3e-60 MHISWNLLGIFVWIILVIYVFFIIHNIRQRHLKMIIQKRRRFDAKTTIIDVIEILIFILA CSYMSVITFFDNPNFSNQQILTNKFEYQPLVLSTGATKSHYVTVTCRHNRKMKQSYRFFS EDQRITVKSNYASIAEGVDPFPVEAQIIPYNKKDLRAADDHYQKAYVAIYTATYKKNWQN GLGLHAGHVFIKYYLIRVPDRSFIKIIEK >gi|311092221|gb|AEKJ01000010.1| GENE 28 30472 - 30933 322 153 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1706 NR:ns ## KEGG: LGAS_1706 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 150 1 150 163 161 60.0 7e-39 MKIKSKILIQKIEKQDYLQDLESIKYSDITSAKLKTIAQKMIQEVIQASKNNSLLQTELV ITGQRPATFVLESNIINLPFANYKKITNFRDEDSEYDINIYVEVISEYINISKFRIDLLA PVADIVAEPDQWIDKLVLIIKDKLTEVRNYNHG >gi|311092221|gb|AEKJ01000010.1| GENE 29 31234 - 31686 609 150 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 137 7 137 152 108 45.0 3e-24 MPYWLDIIINFTFAWIASVGFALTLNVPKRALIYCGHSGALGWMIYWFGIHAGWGRLTSN FLGALLIGIVGIILAKFKKCPVTVFNIPAIVPLVPGVPAYQAVRAMVIGDLASAQNLILR VFIVTIAIAMGFLLAQLVGEIWFKIHKVYH >gi|311092221|gb|AEKJ01000010.1| GENE 30 31688 - 32497 964 269 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 18 266 3 249 250 184 42.0 2e-46 MKKRVVDLKLTKQIVTENQYNDQVLDTCLKAGRLMIESGSEMYRVEDTMLRISRNANIPA ARCFTTPTGLFMSLGEHSKTQMTLIKNRNIDMTVVDKVNELSRAFADKKITLDQLHNKLC DLADHRQTFSNLMQIFGATILSCTLMVLFMDDYDWIDFPVAAIVGGSCYGIYLWIKKYSR VRFLGELVTAMIMGAMTIGICHIFPSLSMDNILIGSLMALVPGVPITNALSDLFRGDLVS GTVRAIEAFLTAIALGGGIGLAIKFLGGF >gi|311092221|gb|AEKJ01000010.1| GENE 31 32463 - 32867 279 134 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1641 NR:ns ## KEGG: FI9785_1641 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 11 126 2 117 127 97 40.0 2e-19 MRTTNMTNKNQKHRFFPVIYATFIGIFAFIAVINVCKHTFQMTTTHSLLISSLVALIFYI SAYILAYISNQIKYLVAKHCLSANDLAKITGLKSDYFPIHNNKLSLIVAKRKWLAILCKL REYDEKKGGRSKID >gi|311092221|gb|AEKJ01000010.1| GENE 32 33022 - 33621 711 199 aa, chain + ## HITS:1 COG:no KEGG:LGG_02225 NR:ns ## KEGG: LGG_02225 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 110 198 243 331 332 144 77.0 2e-33 MGVISLKHKFIAIMTAISLLILNIAIQPVLATQITNKINISSALVRNTMKVQLMEQDFQL KQKKQADQAKLKAIKIKQQQWNQMEQKQAMQRAQKAKQAIAQAPKPQIRTVNKGTFKVSF YDPAVLGSRLGYHGVAANLNIFPRGTRLRITLSNGMVLYRVVNDTGSFAYSNPRQLDVAM PNSQIPAAGILYASVEVIY >gi|311092221|gb|AEKJ01000010.1| GENE 33 33653 - 34756 1128 367 aa, chain - ## HITS:1 COG:BS_lytR KEGG:ns NR:ns ## COG: BS_lytR COG1316 # Protein_GI_number: 16080618 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 73 317 61 298 306 182 42.0 1e-45 MKISNKDKLQRNCVLAKEINRQPAKLVFLKLIGLVITIMLGMCVAVGTRIYFTMASSVRQ ANQGHVMADSSFIAQQKPFSVLILGVDQGIEGRHDQGNSDTMILVTLNPKKGVATMTSIP RDLLADIQPSKKFYMFRVNSAYQLGGNRAAVKTVSTLLNVPVNNYMEVNMKALKNLVDAL GGVDVKVPFSFTYNTKFVKGMQHLNGNAALDYVRMRKEDPQGDYGRQKRQRQVIEQLIHK GMTLKSLNNYRKILNVFAKYVKTNLTFNDMLSVAFKYRSCSHHIVQDYVHAHDAWIGGAA LQVASTSELQRVSDLTRSNLNLKKQKLHNEETRQNKLQKHLKWKKKDPFENYIIYERHSK TKVWTGK >gi|311092221|gb|AEKJ01000010.1| GENE 34 34897 - 36696 2003 599 aa, chain + ## HITS:1 COG:BS_yjbG KEGG:ns NR:ns ## COG: BS_yjbG COG1164 # Protein_GI_number: 16078219 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Bacillus subtilis # 4 598 11 605 609 539 47.0 1e-153 MATPYRKDVEVDLTWDLTRIFKNDQEWEKEFAKIQQEIAELTTLKGKLSTSGTDLYENFS KILKVSREIEKVYVYSTLSSDQDTNNSHYLGFVARVQSLYNDFSAATAFVDPEILDIPEK TIEQFKKDEPRLAEFAHRLDTLNQKRKHTLSSDQEKIIAAASDALNTSENTYNILTNSDM EYGYVEDEDGNTEQLSDGLYSNLIQSQNREVRKQAFDTMFATYGQFENSLASTLSGVVKA HNYNAKMHKYHSAREASLNENGVPTVVYDTLLAEVNKHINLLHRYVALRKKLLKINDLQM YDMYVPLTGQPSDHYDINKAKKIALEALKPLGEDYLKVVKHIFNDRVIDVVETKNKATGA YSGGSYDTDPYILLNWEGNLDSLYTLVHETGHSVHSWYTNHSQKYIYSNYPIFVAEIAST TNENILTEYFLKNITDPKTRAFILNYYLDSFKGTLFRQTQFAEFEQFIHESDAKGEPLTA EILNQFYGDLNQRYYGSSVTPGGQIAKEWSRIPHFYYNFYVYQYATGFAAATALSNNVVH GDKKQLEDYLNFLRSGSSDYPTEIMKKAGVDMTKADYLENAFATFEKRLNEFESLIGKF >gi|311092221|gb|AEKJ01000010.1| GENE 35 36829 - 37824 1100 331 aa, chain + ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 15 331 1 315 316 406 63.0 1e-113 MKKIINDPQNLVDEMVQGMTRAYSSIVEQIPATNAIVRSDKASMQEKVGIVSGGGSGHEP THAGFVGKGMLSAAVCGQVFTSPTPDQIYEAIKAVNHGKGVYLVVKNYSGDVMNFDMAKD LAAMDDIEVKSIVVDDDIAVENSLYTQGRRGVAGTLFMHKVLGAAAQNGASLDEIDELAH AILPNIKTIAVALSAATNPMTGQPGFKLADDEMEYGVGIHSEPGYRREKIKSSKELVEEL ITKLNEELHFDSRNKYAMLVNGMGATPLMEQYVFTNDVLNKLDSFNITPVFMKIGNYMTS IDMAGISLTIFEIKDDKWLEYLNYPVQTIAW >gi|311092221|gb|AEKJ01000010.1| GENE 36 37837 - 38421 580 194 aa, chain + ## HITS:1 COG:L46694 KEGG:ns NR:ns ## COG: L46694 COG2376 # Protein_GI_number: 15672231 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 10 191 9 191 192 179 51.0 3e-45 MELDATQLKKWMELFSKKITANEKYLCELDAPIGDSDHGFNMKRGMDAVVTKLNSAPDEL TICFKTIAMALISTVGGASGPLYGTAFLEMAKESQKSNNIVDLLEAALAGIKKRGGATIG DKTMVDVWSVVIEAIKQDALTTEKIEAAVLATKDMIAKKGRASYLGERSINHIDPGSQSS GYLFESLLEVINNK >gi|311092221|gb|AEKJ01000010.1| GENE 37 38418 - 38786 433 122 aa, chain + ## HITS:1 COG:BH3395 KEGG:ns NR:ns ## COG: BH3395 COG3412 # Protein_GI_number: 15615957 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 3 122 6 125 128 119 55.0 1e-27 MSLGITLVSHSPKIVAGLSDLLSQVAKDVSITIAGGTEQNDIGTSMDKIMTAFEENKADE ILAFYDLGSAKMNLEMAQEFASKKIHLYDVAFIEGAYTAATLLQAGVDLSTIEAQLAPLK IK >gi|311092221|gb|AEKJ01000010.1| GENE 38 38841 - 41186 2471 781 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_20608 NR:ns ## KEGG: HMPREF0421_20608 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 13 448 108 571 725 302 43.0 3e-80 MSIVTATCAVCISQSVSAETNANTNDSEKINRSVLIDSKNKQRENKQKEDKQKENKQPDK DKPKDKDKPNTNVPVKKMAELRVTFQWGGLGDNGTLIKEDSDFGKLSQNWFSGEASPDIK EAFSKLKFKVVDETGKSQEVGCKFVPTLSSTTMSLGEFDAGHTYTISAVNETVPSPYFVR YDNVAISEDNQFKGDVGEFTWDPTNGTKTQYTKALNLDALEIIYAKDESVANKCFSYTQP KDAKGEWISKGDWQFKYNKDNIFARIRMKNNTISFPKENPTKDGYIFDGWQFYTVPYKLP NGRVIPYISMIRSDDISIEGKPATYSPFDKERIKYPYLFALIRDNKGVNNWEDKCGTQYG LISRTFVVFPKWKEVPIAKVTFEDGKKEYASVKARVNMSINGDDLKDQSMPADPKKDGYK FTGWVDGNGKAFNGDTVVTGDMTVFSKYEEIVKPQPIAKVTFKDGDKAYAIVEARVNKSI NGDDLKDQSMPADPKKDGYKFTGWVDSAGKAFTGDTVVAGDMTVFSKYEEIVKPQPIAKV TFKDGETEYAIVEARVNKSINGDDLKDQSMPADPKKDGYKFTGWVDNAGKAFTGDTVVTG DMTVFSKYEEIVKPQPIAKVTFKDGETKYANVNVRVNKSINGDDLKDQSMPADPKKDGYK FTGWVDSTGKAFTGDTVVTGDMTVFSKYEEIVKPQPKVEPQPEIENELIPEDKPEDHSKK SKTHDEASEDIKNIIPEVTKKQVKTTKQLPQTGHNLVLGALISILSFGFAGWLISNKKKR D >gi|311092221|gb|AEKJ01000010.1| GENE 39 41412 - 42284 942 290 aa, chain - ## HITS:1 COG:lin1322 KEGG:ns NR:ns ## COG: lin1322 COG2017 # Protein_GI_number: 16800390 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 4 275 2 275 290 192 34.0 9e-49 MEQVTIENDVLAIKVALLGAEVQEVKSLKDNFSYIWYADAKYWGRHAPVLFPFIGRSYEN KYLIDGKEYNMKQHGFLRDQVFKIVDKQKNKLVLQHSATEGTKLVYPYSYTVTITYTLED TYLHINYEIDNNDAKDMYYSFGFHPGFNLNSDLSNYSLQFEPKLNSLPTLLVEPNPFRNG KIADTQLQNGKLELNYPMLDNGVKIYDISDIRTVSLISCRDAHQVTEDIADFPYLAVWSP ENKKAPFLCVEPFRGLPDQYGKTIDIKDKLGEQYIAANSNDQFTVSLDFK >gi|311092221|gb|AEKJ01000010.1| GENE 40 42468 - 43145 760 225 aa, chain - ## HITS:1 COG:no KEGG:FI9785_565 NR:ns ## KEGG: FI9785_565 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 223 1 224 226 265 57.0 1e-69 MDTIDKFRQINPNYKIYDIHDSSFSDYGVVYPFDNVSEINDVISQYAKPIDGMQYVSPIK ELESKRLINKIKYDIFGDMPIDVGLTFGHSEEFTAFEYHQCSEVNIMLDDVIMVLGKRQT LETYGTIDPNREAKMFYVPKGSVIELYNDTLHYAPLQVTSEGYKVVVIVISGTNTSLSEN VVTANPRLVKKGKFQVVHACRKDKLAQGYKLAVVGDVIKTNSLKM >gi|311092221|gb|AEKJ01000010.1| GENE 41 43158 - 43733 911 191 aa, chain - ## HITS:1 COG:SA1996 KEGG:ns NR:ns ## COG: SA1996 COG0698 # Protein_GI_number: 15927774 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Staphylococcus aureus N315 # 22 191 3 171 171 182 52.0 4e-46 MLDNDRPQPEYVDPAIDKHVVVALANDHIVTPIKMALSDHLKDEGYQVLDFGTYDNSRTH YPIYGKRAAEAVATGRADVAIVMCGTGIGISTAADKNDGVRAAMVGDVAQAKYAKRELNA NILGIGGIVLGRDFIFYIADAFLNEKYHETPENKKLIEKIDHIATPNPEQTGNEHFFDEE NKKWAEGVYHD >gi|311092221|gb|AEKJ01000010.1| GENE 42 43751 - 44179 593 142 aa, chain - ## HITS:1 COG:SA1997 KEGG:ns NR:ns ## COG: SA1997 COG0698 # Protein_GI_number: 15927775 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Staphylococcus aureus N315 # 1 141 1 141 142 127 46.0 5e-30 MKVVIGSDKDGFALKETIKEWLTSNDYEVVDVTPEPAEDFVESSLKVTHEVLENNIKKAI MFDKYGVGSAMASNKVKGMVTADVNEERTGHMTAMHNGAKALAIGSGIVGETLAKSIIEY YLHTEYAGGRHQVRLDMLEKMI >gi|311092221|gb|AEKJ01000010.1| GENE 43 44189 - 44947 784 252 aa, chain - ## HITS:1 COG:SPy1712 KEGG:ns NR:ns ## COG: SPy1712 COG1349 # Protein_GI_number: 15675565 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 249 1 248 256 211 42.0 8e-55 MLKQERFSKIVNILSTEEIVQVSDLANMMNVSEMTIRRDLRELDRRGKVLRVHGGAQSVS SSLIIEKNFNEKREIHVPEKKEVAKKAAKLIKDGETVYVGPGTTLEFMVAELKQKKLRLV TNSIPVFEAARQNANNYDLILIGGSYRRTSGACIGALANHDLKSMGYDRAFVGVNGIIDN ALMTANMEEGLTQKIVLDRAVHKYVVCDKFKLNKNDFYNFYKLSDIDRLITNHDVAKKLV DYYGQFIEIDNS >gi|311092221|gb|AEKJ01000010.1| GENE 44 45065 - 46057 1110 330 aa, chain - ## HITS:1 COG:lin0543 KEGG:ns NR:ns ## COG: lin0543 COG3684 # Protein_GI_number: 16799618 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Listeria innocua # 12 326 12 325 338 315 52.0 1e-85 MRNITVEVAKHMERLSNEDGVISAVAIDQRGSLKKMLAEAANKPADETTIVDFKKAISSE LTPYASAILTDPEYGLPATKVRDKNCGLILAYEKTGYDTTEPGRMCDLIANQSVRRIKEE GADAVKFMLYYDPEEPDAINDKKKAFVERVGAETKAYGLAFFLEVVTYDGSMDSVKSEEY AKIKPKKVFMTMEEFSKPQYEVTVLKVEVPFNIHYVAGFNGDNKALYTVDEAKAMFKKQS DLTDLPYIFLSAGVTSEEFIAELKMAEEAGAEFNGVLCGRATWKPSIKPFAAEGESVGRN WLATQGKENIENLNHALIGAKSWKNKLTVE >gi|311092221|gb|AEKJ01000010.1| GENE 45 46158 - 47561 1472 467 aa, chain - ## HITS:1 COG:SP1184 KEGG:ns NR:ns ## COG: SP1184 COG2723 # Protein_GI_number: 15901049 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 467 1 467 468 805 83.0 0 MEKILSKDFIFGGATAAYQAEGATHEDGKGPVAWDKYLKENYWYTAEPASDFYHKYPIDL KLAQEYGINGIRVSIAWSRIFPEGYGKVNYKGVEFYHKLFAECHKRNVEPFVTLHHFDTP EILHENGDFLNRENIDHFVDYAEFCFKEYPEINYWTTFNEIGPIGEGQYLIGKFPPGIKY DLAKVFQSHHNMMVAHARTVKLFKDGGYNGEIGVVHALPTKYPYDPENPEDVRAAELDDI IHNKFILDATFLGKYSDETIKGVEHILAVNGGKLDLRPEDFKVLNAAKNLNDFLGINYYM SDWMKAFDGDTEITHNSTGNKGGSKYQIKGVGQRVFDVDVPRTDWDWMIYPKGLYDQIMR VKKDYPNYKKIYITENGLGYKDVFENNTVYDDARIDYVKKHLEVIADAISDGANVKGYFI WSLMDVFSWSNGYEKRYGLFYVDFKTQKRYPKKSAEWYKKISDTHIV >gi|311092221|gb|AEKJ01000010.1| GENE 46 47630 - 49321 1359 563 aa, chain - ## HITS:1 COG:SPy1917 KEGG:ns NR:ns ## COG: SPy1917 COG1455 # Protein_GI_number: 15675726 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 1 563 1 565 565 840 75.0 0 MNVLISKIEKGKPFFEKVSRNIYLRAIRDGFIASMPVILFSSIFLLIAFVPNIFGIRWGK DVVELLMKPYNYTMGIVAFLVAGTTAKSLTDSINRDMDKTNQVNFISTMLASITGFLILA SDSIQGGFSSDFLGTKGLLSAFIAAFIVVNIYKICIKKNVTIRMPEEVPPNISQVFKDVI PFALSILVLYALDLLVRRSLGTGVAPAIGKVIAPLFKAADGYVGITIIFGAYALFWFIGI HGPSIVEPAIAAITYANIETNFKLLQAGQHADKILTSGTQMFIVTMGGTGATLVVPFMFM WLAKSKQNRAIGRASVVPTFFGVNEPILFGAPLVLNPIFFIPFVFAPIANVWIFKFFVDV LGMNSFSVNLPWTTPGPIGIIMGTGFGLWSVVLAITLIAVDVIIYYPFFKVYDNQILEHE ISGNCSNNLKDKVAANFDTSKADAILEKNNISKVGNDVKQTNVLVLCAGGGTSGLLANAL NKAAKDYNVPITAAAGSYGSHREILPQYQLVILAPQVASNYVDMKAETDRLGIKLAKTEG VQYIKLTRDGLGALKFVEEQIKN >gi|311092221|gb|AEKJ01000010.1| GENE 47 49326 - 49637 366 103 aa, chain - ## HITS:1 COG:SPy1918 KEGG:ns NR:ns ## COG: SPy1918 COG1447 # Protein_GI_number: 15675727 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Streptococcus pyogenes M1 GAS # 1 103 1 103 105 137 72.0 7e-33 MDKEQLTLLGFEIVAYAGDARSKFLEALDAAKNGEYDKAEQLIASGDECLNKAHSVQTDL LSKEAAGKNIEFSVTLMHGQDHLMTAILLRDLMKHIIALYKKG >gi|311092221|gb|AEKJ01000010.1| GENE 48 50054 - 51052 873 332 aa, chain - ## HITS:1 COG:SP1799 KEGG:ns NR:ns ## COG: SP1799 COG1609 # Protein_GI_number: 15901628 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 329 10 330 333 180 35.0 4e-45 MKDVAREAGVSVGTVSNYINGKKVRPVVAKSIEQAIKKLNYVVNNTARLLKNNCSPFVIF VVPTVWSPYFSELTFWIQKKLNSLGYKMILCISENDYKLEKDYVKMAEEQRAAGIISVSY SNLTTHIRSDIPFVSIEKESTGIFPLVTSDNYSGGSLAAKELQLRNVKRYYFIGTTNQDS VSMIARRSGFMDYCHNNGLMADVLTVASSRKISQFRKDIDKIVKKLLSENNLGDIGVFTH TDEIAIVLLNELRMKGIRVPEDIQIIGFDGWKITEEDSLNISSIRQPVDMIAEYAVKQLD EEIRYSDNFEIRRINLPVSFIPGITTNNDVRR >gi|311092221|gb|AEKJ01000010.1| GENE 49 51054 - 52727 1337 557 aa, chain - ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 6 553 5 555 561 526 48.0 1e-149 MSLKDWKKKTIVYEVYIQSFKDSNNDGIGDINGLESKLDYIKELGANSIWITPIFKSPLV DNGYDIEDYESINSIYGTMSDFEKLLISAHKKNLKIILDLVVNHTSDKHKWFLESKKSKN NQYSDYYIWRDPKPDGTEPSNLGSAFGGSAWTYVAERKQYYLHLFSEQQPDLNWNNVKVR QSIYHMMKFWLDKGVDGFRMDSISLISKPEKFDNVPLENHQRYGAYYYNISNGPHIHEYL QEMNSEVLSKYNIITIGETPHTTPEEAKKYVDPYRNELDMVFQFEHMHVDYGKFGRYSDV MYKLNDLRCAMNKWQEKLSWNTNYLGNHDQPRIVSRFGNDDKYRIKSAKVLAMMYILQKG TPFIFEGEEIGMTNLHITNINELKDIEAHYNYNFFIDKQISPEKALEMVNRKTRDNARTP MQWNFDRNSGFSDVKPWFDVNSNYKSINVKKDLQSSDSIYRFYQKLLQLRKEDSIMIDGE FRPLYINDSEIYAFIRELSGHKKLIVCSLCAYNKKFEVPKNVGNISKVILSNYEKDININ DRTIYLKPYEGVVVSLD >gi|311092221|gb|AEKJ01000010.1| GENE 50 52724 - 53146 469 140 aa, chain - ## HITS:1 COG:STM4535 KEGG:ns NR:ns ## COG: STM4535 COG2893 # Protein_GI_number: 16767779 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 3 140 1 138 140 77 33.0 7e-15 MKINRHIIIASHSNLAQGMKDTLEFFAGDKLKITVLTAYVDNVPIDETIKSMFENIDSDD EIVVLTDILGGSVNQKFFLYINRPHTILLTGMNLSLALAITMEPLDSYISPEKIKELVLD AQKQIKYENEISTLVSEEDE >gi|311092221|gb|AEKJ01000010.1| GENE 51 53161 - 53997 865 278 aa, chain - ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 15 275 16 275 275 213 42.0 3e-55 MSNENSHITDENCKLTKKDLNKMFRRWIFSAGLGYNFETQQAPSVAFSMRKALRKIYKDD KEYIEAMDNHYKYFNANPLMANVILGATLAMEENEGIKAKNAVQSLKTSLMGPFSGVGDS IFWILIPTIMGSIAGYMAVQGNATGAVIWMILQAMFYFLKVWLFKTGYNSGTKLVTSLGK KINIFTDAISIMGLMVIGCLIPTVVKVFIPLKFKTGKVILSLQNGILDKIMPALLPVAVT IFVYWLLGKKNITPTKIIGLIILICLLGSFTGILGVVK >gi|311092221|gb|AEKJ01000010.1| GENE 52 53990 - 54796 843 268 aa, chain - ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 4 268 5 267 267 165 40.0 1e-40 MSIILQNILVIIVAAYMAWDNGTGNQITGNWPVIIGMIIGLIMGNISIGLAIGGTLQLMS LGVAAIGGSSIPEYGVATIVAVFIAIRTGASIGTAVAVGLPVGIFTLQLDVLIKIINNFF AHWSQKMLHEKKYAKIDAIFYLTIAVWMLKYVIPISLVVFFGTPIVKFILKVIPGWFTNG LTIAGGMLPVVGIGMLLRYMPVKKYFSFLIIGFVLAGYLKLPVLAIALIGLAATYETYRI NSKKIDNANLANGTVVQSGECEGDDFDE >gi|311092221|gb|AEKJ01000010.1| GENE 53 54799 - 55290 739 163 aa, chain - ## HITS:1 COG:SP0061 KEGG:ns NR:ns ## COG: SP0061 COG3444 # Protein_GI_number: 15900006 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 148 1 148 158 108 35.0 5e-24 MPIVLARIDQRLIHGITVNQWNKVLHPKRFMVVDDEISNNELVKASMRMGKPAGTGMSII SIDDAIKNFKVGKYDTHSVFLIVKEPRIILDLVNAGIEIKSVNVGALFEEKGRKPYTNHV AMNDQEVSDLKKIASKHIRVFFEYTPDDENEIELEAVLKNKEE >gi|311092221|gb|AEKJ01000010.1| GENE 54 55560 - 58628 2244 1022 aa, chain - ## HITS:1 COG:XF2739 KEGG:ns NR:ns ## COG: XF2739 COG0610 # Protein_GI_number: 15839328 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 7 1017 20 1050 1058 760 39.0 0 MSGLYKEANYENSIVELFRNMGYRHVYGPKIERDFYSPLYDEELIAALYRLNPSMPEAAI QDALYKLKNFENAELFQKNELFMNYLQNGIEVKYFVNDEECSGLVYLLDYKKPDNNHFVV ANQWTFIENSNKRPDVILFLNGLPLVLIELKSPAREETDASEGYLQIRNYMQEIPSMFIY NCICVISDQLISKAGTITSGEDRFMEWKTKDGSYENTQYAQFDTFFEGMFDKVRLLDIIK NFICFSNDGLNKIKILAAYHQYFAVNKAIESTKRATVTDGKGGVFWHTQGSGKSLSMVFY AHLLQEALDSPTIVVITDRNDLDDQLYSQFAKCKDFLRQIPVHATCRKLVETSGKNDIGL KDWLDGRKANGIIFTTMQKFEESSEPLSKRRNIIVMADEAHRSQYGLKERVNAKTGEIKI GTARVIRDSLPNATYIGFTGTPIAKKDRNTREVFGDYIDIYDMTQAVEDGATRPVYYESR VIKLKFDEATLHLIDNEYDIMANNADPEVIEKSKRELGQMEAILGNDTTIDTLVIDIIKH YENYRENLLTGKAMIVAYSREIAMKVYKRMLELRPSWTKKVKVVMTDSNKDPEEWRSVIG NKHHRDELAREFKDNDSEMKIAIVVDMWLTGFDVPSLATMYVYKPMQGYNLMQAIARVNR VFKNKEGGLIVDYVGIASALKQAMNDYTSRDKNNYGDTDIAKIAYPKFLEKLSICRDLFH GYDYSRFIKGYDLERSKAITGGVNFIVGTDKNKKREDFLKESLLLSQALSLCSSLVERDL RVEAAFFESVRVLVMRLINQGEGNKISLPEMNARINELLKASIKSDGVIDLFSDVKTEFS LFDSKFLEEISKMKEKNLAVELLKKLIAEQVHIYRRTNVVKSEKFSEIIQGVMNKYLNGM LTNEEVIEELLKMAKQIRDAHKAGDQLGLSEDELAFYDALTKPQAIKDFYENDELIAITK ELTEALRKNRTIDWQKRDSERAKMRMMIKKLLKQHRYPPKGMEDAVQTVMTQCELWTDNT DI >gi|311092221|gb|AEKJ01000010.1| GENE 55 58728 - 59933 577 401 aa, chain - ## HITS:1 COG:MJECL41 KEGG:ns NR:ns ## COG: MJECL41 COG0732 # Protein_GI_number: 10954528 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Methanococcus jannaschii # 3 399 24 432 432 231 35.0 1e-60 MTNWKICTIGDLGMVIGGATPSTKAAENYDGGTIAWITPKDLAGFSGRFISYGERNITKQ GLKSCSAKLMPKHTVLFSSRAPIGYIAIANQELCTNQGFKSVVPNDDTDYKFLYYLLKYN KNKIENLGSGTTFKEVSGSTMRDIEVSVPTSIEEQRKIASVLSLLDDKIEKNASINKNLE QQAQAIFKSWFLDYKPFNGVRPIDWINGTIDDLAKEVVCGKTPSTKVKEYYGSDVPFIKI PDMHGNTYVVTTEQYLSNYGAASQAKKTLPPNSICVSCIGTAGLVTLVASKSQTNQQINA IVPKDKYSPFYIYLLMQTLSEVINKLGQSGSTIVNLNKTQFEKIKAIIPSITDMKTFDAL VSPLFALILENQKENIRLSSLRNTLLPKLMSGELDVSNLDL >gi|311092221|gb|AEKJ01000010.1| GENE 56 59946 - 60935 375 329 aa, chain - ## HITS:1 COG:SP0890 KEGG:ns NR:ns ## COG: SP0890 COG0582 # Protein_GI_number: 15900773 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pneumoniae TIGR4 # 9 328 8 320 321 370 62.0 1e-102 MKQKVINEVMQGMLCYLNNMQLEKLQEVLEHALFHKQVSETEEEVNAELTNEQFLNNFLA AKRIEGCSEKSLTYYRATIEVMTTKIKKNVREMETDDLRTYLTEYQHEKNSSKVTVDNIR RILSSFFSWLEDENYILKSPARRIHKVKAALTIKETYTDEALEKMRDSCEEPRDLALIDI LASTGMRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDDNP ALFVSLRAPHERLKIGGVECRLRELGNKLDIEKVHPHKFRRTLATMAIDKGMPIEQLQQL LGHKRIDTTLQYAMVKQSNVKLAHRKYIG >gi|311092221|gb|AEKJ01000010.1| GENE 57 61106 - 61693 302 195 aa, chain + ## HITS:1 COG:XF2741 KEGG:ns NR:ns ## COG: XF2741 COG0732 # Protein_GI_number: 15839330 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Xylella fastidiosa 9a5c # 5 194 216 405 412 96 26.0 2e-20 MLSDWKKGKLKDILKLKRQSIKTGENTTLPYLPIDVIPMRTFALTDFKPNAEAQSSLITF DKDDIIIGAMRVYFHRVVLAPCDGITRTTCFTLAPYNNEYLSFALLCCDQESSIDYAQST SKGSTMPYAIWEGGLGDMEIIIPTPEIAKKFNEIVLPMLRQIQNSYFENNRLREIRDALL PRLMSGEVDVSNLDL >gi|311092221|gb|AEKJ01000010.1| GENE 58 61690 - 62226 221 178 aa, chain - ## HITS:1 COG:Cj1051c_2 KEGG:ns NR:ns ## COG: Cj1051c_2 COG0732 # Protein_GI_number: 15792378 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Campylobacter jejuni # 53 170 318 434 454 88 40.0 7e-18 MKYKWTIKTLSDIADFNPRESLSKGTLAKKIAMDKLQPFCRDVPSFELEKFSGGTKFRNG DTIMARITPCLENGKTAKVNILDDGEIGFGSTEYIVFRAKKGTDKDYLYYLVCSPLVREP AIKSMVGSSGRQRVQTDVVQGLSIAVPSIEEQRQIGGILRALDDKIELNNEINKNLAA >gi|311092221|gb|AEKJ01000010.1| GENE 59 62216 - 62542 415 108 aa, chain - ## HITS:1 COG:HI1287 KEGG:ns NR:ns ## COG: HI1287 COG0286 # Protein_GI_number: 16273201 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Haemophilus influenzae # 1 107 336 443 443 121 54.0 3e-28 MGHMVDRKHRDFSEEDIQKLADTFEAFQNGTLEDEKGFCSVATIQDIAKQDYVLTPGRYV GIEEQEDDGEPFDEKMTRLTSELSDMFERSHELEDEIRKKLGAIGYEI >gi|311092221|gb|AEKJ01000010.1| GENE 60 62527 - 63723 1313 398 aa, chain - ## HITS:1 COG:XF2742 KEGG:ns NR:ns ## COG: XF2742 COG0286 # Protein_GI_number: 15839331 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Xylella fastidiosa 9a5c # 3 394 10 406 519 442 51.0 1e-124 MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAEGD GFEDDRDAYIMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIESENKTLKDVLPKN YASPDLNKQVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGKSGGEFYTPS SIVKTLVSILKPFDNCRVYDCCCGSGGMFVQSAKFIRAHSGNCGSISIYGQEANADTWKM AKMNMAIRGIDADLGPYQADTFTNDLHPTLKADFILANPPFNYSPWNQEKLLDDVRWKYG TPPAGNANYAWIQHMIHHLAPNGKIGLVLANGALSSQSCGEGEIRQKIIEDDLIEGIISL PPKLFYSVQIPVTLWFISQNKNKKEKQSLLMLAKWDTW >gi|311092221|gb|AEKJ01000010.1| GENE 61 63955 - 65514 1659 519 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_20066 NR:ns ## KEGG: HMPREF0421_20066 # Name: pfo # Def: perfringolysin O # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 34 519 62 541 541 517 54.0 1e-145 MNKKGLRKIIYASSLALLELSLVTATKPAQAATNTEPKTAIVAKHNTEEPMSVNDYLLGL DYDSQAVLTRQGDMLTNHFAHETTTDNNGRFVVVEKQKKTISNSTSSISVTTANDSRVFA GALFKADNNLIENNPTLVSLRRAPITVSVDLPGMTDNTNAKLVAHPTTSSVNSAVNDLVE KWIAKDSVNHAIPARIEYDTTSAQSMDQLKVKFGADFAKISVPLKIDFDAIHNGEKQASI VNFKQIYYTASVDAPENPGDVFDAHVTAKDLQKRGINSKTPLVYVSSVSYGRSMYIKLET TSKSDKVQAAFDAAIKGVKIAPNSEYDHILKNTSVVAVILGGNSGDATEVVRGDINTLKE LIQKGSKFDSSNPGVAVSYGTSFLKDNQVAVINNTADYIATKVTEYSNGKLILNHKGAYV ARFFVDWDEVSYDSNGREVLTHHTWADNGRGRTSGFSTEINLKGNVRHLNVKIQECTGLA WEWWRTIYDEQDLPLAHLRQVTIWGTTLRPKHKEEVKND >gi|311092221|gb|AEKJ01000010.1| GENE 62 65716 - 66192 713 158 aa, chain + ## HITS:1 COG:no KEGG:FI9785_192 NR:ns ## KEGG: FI9785_192 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: Pyrimidine metabolism [PATH:ljf00240] # 1 158 1 158 158 261 77.0 4e-69 MAEQKTVYFGAGWFSDVQNRAYKDAMDALAANPTINLKDSYIPLNNQYKGIRVDEHPEYL HDKEWAQATYNGDLIGIRSSDIMLGVYVPDEEDVGLGMELGYAQGQGKYILLVIPDEFYG NPINLMSWGVADNIIPMSKLKDFNFNQPRFGFYDGAVY >gi|311092221|gb|AEKJ01000010.1| GENE 63 66321 - 68057 2059 578 aa, chain - ## HITS:1 COG:lin1002 KEGG:ns NR:ns ## COG: lin1002 COG1080 # Protein_GI_number: 16800071 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Listeria innocua # 1 568 1 566 572 702 62.0 0 MTEKLKGIAASEGIAIAPAYLLVEPDLSFSKSKVTDLEAEVSRFKEAIDESTKELEAVRD QAKKNLGEEEAQVFDAHLLFLSDPEFSGAIENEIKNNSINAEAALDAISNNFISIFESMT DNAYMQERAADVRDVSKRIMAHLLGVTLPDPATIDHEVVVIAHDLTPSDTAQLNKKYVKG FITDIGGRTAHSAIMARSLEIPAVVGTNTITQDVNNGQMVIADGLDGNVLIEPSAAEISS FDEKGRKFAEQKAEWKKLKDQPSQTADGKHFTIAANIGTPDDMKGVLENGAEAVGLYRTE FLYMDSSDFPTEDAQFEAYKAVIEGMKGKQVIIRTCDIGGDKHLDYWDLPEEMNPFLGLR AIRLSMHNKDIFKTQLRALLRASAYGKLGIMFPMIGTLTELRKAKAILAEVRAELEAENV KIGEDLQVGMMIEVPAAAILADQFAKEVDFFSIGTNDLIQYTMAADRGNDGVSYLYQPYN PSVLRLIKNTIDGAHQNGIWCGMCGEAAGDSVMFPILLSMGLDEYSMSATSILRIRSLMK KISLEDVKELANEACYVSETFEDNAKLVAETLKKLNIN >gi|311092221|gb|AEKJ01000010.1| GENE 64 68057 - 68323 415 88 aa, chain - ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 108 71.0 2e-24 MEKREFKVIAETGIHARPATLLVQAASKFSSDINLEYSGKSVNLKSIMGVMSLGVGQGSE ISISAEGDDEKEAIDAIADTMKKEGLAE >gi|311092221|gb|AEKJ01000010.1| GENE 65 68451 - 68624 319 57 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1388 NR:ns ## KEGG: FI9785_1388 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 56 1 56 60 66 55.0 4e-10 MDYQEILEKIVNGELAEYKVEPQTAFEFQRVLRNFQRRSEIQGVAQVGGSIIYRLAK >gi|311092221|gb|AEKJ01000010.1| GENE 66 68755 - 70896 1587 713 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 53 713 125 806 815 615 47 1e-175 MLCQNCHQRPASIHLYLNNNGENREIALCEDCYQLLKNENGSANMNNFFSSFNDLLGSLG GSTQDFDQPRDNSPKKNKANNGSDSLLNQYGIDLTALAKQGKIDPVVGRDKEIARVIEIL NRRTKNNPVLIGEAGVGKTAVVEGLAQQIIDGSVPAKLQNKKIISLNMVSLVQGTSLRGQ FEQRMQQLIKELESDPNIILFIDEIHELVNAGNAEGGMDAGNIIKPALARGDFQLVGATT IKEYRQIEKDSALARRFQPVEVKEPSIEETIKILQGIKKKYEDYHHVTYTDQAIVSAVTL SSRYIQDRFLPDKAIDLLDEAGSRMNLTIPYVDDAKLKERVEAAQELKQTALKNEDYEKA AYYRDQIEKYEKLKDQKVDPDKTPVISEKVMEKIIEEKTNIPVGDLQKQEQMQLKNLADD LKKHIIGQDKAVDVISKAIRRNRVGFNKSGRPIGSFLFVGPTGVGKTELAKQLAKQMFGT EKSMIRFDMSEYMEQYSVSKLIGSAPGYVGYEEAGQLTEKVRHNPYSLILFDEIEKAHPD VLHLFLQILDDGHLTDSQGRTVSFKDTIIIMTSNAGQGIKSASVGFSAENNHNEQFKKVL GQYFKPEFLNRLDDIVEFEPLSKESLIQIVDLMLDKTNEMIKDQDLHINVTPEAKDLLVE KGYDPDMGARPLRRVIQAMIEDKVADYKLDHPTAKNLTAKRHENDIIIVEDNQ >gi|311092221|gb|AEKJ01000010.1| GENE 67 70951 - 71229 324 92 aa, chain + ## HITS:1 COG:no KEGG:LJ0814 NR:ns ## KEGG: LJ0814 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 92 32 123 123 126 72.0 3e-28 MHLIDVTNTYRDLIERQLSSTSSQYIKVYSLGNITVVYTETSTKIEIVLENHRRGIHEDE IQFVIKRLIHEDKIYNISMDQSRKIISITCDK >gi|311092221|gb|AEKJ01000010.1| GENE 68 71412 - 72293 1032 293 aa, chain - ## HITS:1 COG:MTH692 KEGG:ns NR:ns ## COG: MTH692 COG0330 # Protein_GI_number: 15678719 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Methanothermobacter thermautotrophicus # 34 287 27 293 318 135 32.0 7e-32 MEFKMILDLKIIIFIVLLVILTSGCTTIVPQNYEGLIETLGKYTKTVKAGLTFKIPFFQR VKKVSMALQPLEISRYSIITKDNAEISTSLTLNYQVTNSFKYFYNNTDSETSMVQLVRGH LRDIIGRMDLNDALGSTSAINNELSKAIGDLTDIYGISVIRINVDELLPSKQIQAAMDKQ LTADREKTATIAKAEGEAENIRLTTKANNDALIATAKAKAEAIKTEADAEAYRINKLQET LSKASEGYFRNQSIVAFTKLSAGNNNMIVMDKENIDKIGDIPAIKKIWDQDKN >gi|311092221|gb|AEKJ01000010.1| GENE 69 72396 - 77579 5765 1727 aa, chain - ## HITS:1 COG:BS_amyX KEGG:ns NR:ns ## COG: BS_amyX COG1523 # Protein_GI_number: 16080045 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Bacillus subtilis # 563 1137 77 631 718 442 39.0 1e-123 MNFKINKKKITFLCTSTILGLVVSVSTVNADAVNNNIKNNNNVSLIKAPTDRSVDINQKT TKVIVHYQGDGNKWKLYTWVNNGTDKVDGKEYPWDGKDEYGNYKIIDMPGEHSKIGVLIK DSNWHKDGSNNDRQITTDVSGKAEVWYKEGSDQAQTVTPKFKKANIEINYLGSDAPASVK VKTDIEDKQADLSLKEDATKTMKQGEIELKATDNKEFTKVIINDNQQHEFTPLPGAKTNI YLVAGDKNVYYTASAAKKVIDHKKKDQQDSKLIEKLKKIAAKKEQVDFSKEQIVASTKVI VHYNGDASKWALWCWPFGKGGKQYSFDKEDDYGHYAEFNIDHSDKVGFLIKGQKDWSKDG KTKADRIVNTDDSGKVEVWYAAGKDETQVVTPSFKDVKLKLHYLGDEAPQTMSVWADDKQ DSKQTIKLDKSETNGDKVGEITITGQDLHQINISNGKQVYKVTPSPKGQITDVYLNDVDN LPHYTEYSARKDFILSMANMDSDHVVKIKTNEQLSPDLVKQLLKAQNNEITKVEAVNGTD NLSDTFKVTLKDSLELGVNSRIAFCGNPKAIDVRSYVRSKDFDDKYFYANDDLGSTYSKE KTTIKLWSPIATKVTLRLYKNLDNSSQPDKTIDLTCGDKGVWSTTLTDHDYKGWAYDYRL EFADGHVTTTDDPYSTATTINGVRSVIEDVDNIKPADFIKMPAFTKPTDAIIYEAGVRDL TADKNANVKHPGQFLGLTQEGTKTDTGYPTGLDYLKKLGVTHVQFLPMYDFGSIDEAHPS NAYNWGYDPVNYNVPEGSYSSKPADPAARILEMKEMINALHKQGLRVVMDVVYNHVYGLD KQAFDKVVPGYYFKYDDNGNMVDDIGMGNAVASQRRMVRKYIVDSVKYWAKNYHIDGFRF DTMGVLDTDTMAEVYKEINKINPGTLIYGEGWEIKPNERPKEASYVHANLIPNVGFFGDN LRNAVIGESGSFGNARSGLAQGNLTDKDKNGVSHYQEDAAAFVKGFMGSQGFNKHNYLNP GQVINYSTCHDNLTLYDALKAHLPNANAAEFVKRAKLADSMIMLSQGVPLFHSGQEALRT KNGNANSYNADITVNEIDWKRVEQNKDLVSYFQKLVQLRKTCPAFRMSTYDEIKKNITPI VQGENGVFAFEIKSADSTMYVIFNVNEKANQFTSVDLTGSKILLSSDDTTVGAKTILPGL STLVIKKISDKDKINDLIAHLEADKIEFQQLKDEIAKEEAKSQKLSVLVDQLNDKIAKME SAQTALQQLKDEIANEKAKSQKLSILVDQLNDKIAKMEAAQASLQQLKDEIANEKAKSQK LSVLVDQLNDKIAKTEADKIAFQQLKKDIMTEIENYIKDKKEPEIDLSKKVLDAIAHADI EKLTSYKLSDDVMKAVVEFKQGNKKLLVDMIADAIAHVNVDQLVSYKLDEATIQAIKQYQ QGNKKDLRDIIAEAIKNYANEGGTAPYKLDNDVVNQIKADLETESDVESNTPQESVETVT EPEISPEILKDANDQENTIVGVVKIQKDSTIFDGNGSATDKVLPAGSRWKIDRITEIGGM KFYRVGTDQYILIDTAKSDGVIFTKTEKPVIGVLYINQNVDLFDKDGHNTNIRLNKGTYW KIWGAKVINGKLFYRVGTQKQWVAAESVKVVDNKAIKETPVTGVVKVHVNGHPDYQVAML DDKGNYTGQFLIQGNSYKLVAKKIINGRLCYRLGTQKQWVPAEYLLF >gi|311092221|gb|AEKJ01000010.1| GENE 70 77702 - 79024 1424 440 aa, chain - ## HITS:1 COG:BH3248 KEGG:ns NR:ns ## COG: BH3248 COG0773 # Protein_GI_number: 15615810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Bacillus halodurans # 8 436 4 431 433 452 53.0 1e-127 MLDKTKEYWFIGIKGTGMASLALILHDMGYHVAGSDIEKHTFTQDPLLAKGIKITPFDAN NIKDQGQVIIKGNAFKEENVEVKACIDKKIAWQSYPDTVQEIIAQHTSIGISGSHGKTST TGLLAHVLGQLAPTSFLIGDGTGKAIKDSRFFVYEADEYRRHFLAYHPDYQIMTNVDFDH PDYFKDRDDYASAFQTAAEQTKKGLFVWGDDTRLNNIQVSIPKYTYGFNNTDDFQAYDIQ KNITGSTFKVKYHDIDLGQFEIHLFGDHNILNTTAVIAVAYIEKESLDLVRAALLTYKGA KRRFSEKSYGKINIIDDYAHHPTEMKATLQAARQKYPNKILVAIFQPHTYSRTAEFADQF VEILKTADYAYVTPIFGSARENHGNISSQDLTKRIPNSEVISLDNIADLTKFKDAVLVFM GAGDITKYEVAYEALLEQNK >gi|311092221|gb|AEKJ01000010.1| GENE 71 79059 - 79703 851 214 aa, chain - ## HITS:1 COG:BH3251 KEGG:ns NR:ns ## COG: BH3251 COG0073 # Protein_GI_number: 15615813 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Bacillus halodurans # 1 198 1 199 200 157 41.0 2e-38 MIISTNKKSYPDTIILILDQGEGRSTYEEKNNIVQVKDEKGKIVGYNFFKVSDFLDYDKL PNGQVKPDQKLLDILNDQLTKAGFDDKLELGKPTLVYGFVKTCEPHPDSDHLHVTTINVG DDEYQIVCGAPNIQQGQKVVVALPGTLMPNGQQIWPGELRGVKSSGMICSARELGLPHAP QKRGILVVPDTFQVGDEFEPTKCDELLACGQITL >gi|311092221|gb|AEKJ01000010.1| GENE 72 79728 - 80048 406 106 aa, chain - ## HITS:1 COG:BH3253 KEGG:ns NR:ns ## COG: BH3253 COG0526 # Protein_GI_number: 15615815 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 12 102 10 100 106 97 51.0 6e-21 MKKFAEFSTSDFQREIAKGKVVLLFSASWCPDCRFLDMFLPEIVSEFTEYQFCYIDIDGA TDLAKKMNILGIPSFVAYQDGQEIGRLVSKDRKTKEEVVSFLKSLG >gi|311092221|gb|AEKJ01000010.1| GENE 73 80067 - 80717 780 216 aa, chain - ## HITS:1 COG:BH3261 KEGG:ns NR:ns ## COG: BH3261 COG0220 # Protein_GI_number: 15615823 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Bacillus halodurans # 1 216 1 211 220 200 47.0 2e-51 MRLRNKPWAQKLVLEHPEALLNEPDPEIKIPWQERFADFSKPLAIEIGSGKGQFIINWAK QHPEMNFIGVELQTTAAGMILRKKLADQIDNLQIMCADAANIALYLPPKSADIIFLNFSD PWPKTRHEKRRLTYKSFLDKYKQVLKDNGHIEFKTDNQGLFEYSLQSMNNYGMLFDFVSL DLHQSNSEIYKQNIETEYEHKFAERGNRIYCVHAHF >gi|311092221|gb|AEKJ01000010.1| GENE 74 80729 - 81925 985 398 aa, chain - ## HITS:1 COG:BS_ecsB KEGG:ns NR:ns ## COG: BS_ecsB COG4473 # Protein_GI_number: 16078069 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Bacillus subtilis # 1 389 4 402 408 113 25.0 7e-25 MQKIANKRLNSNARKQIHYLALVFNDFFVLALLLIFGALMFWYAKSIQTWPRNLWYYSPL LALVFSISFGFGSLVTLFEYADKQFLLSLDDQLEFYLKSMLKYSMVLPTIILLLVGGIAF PFAFLRMAIHPINYLILLVDMLLLKHVQHLLQEHSLYFNDKLHYNTIAFAVIGYFLILLG IYQPLVLLAIIVVAMVYIIRQPLQGFNWNKAISQESQRKDRIDNFYSMFTDVQDKKITIS RRKYLDFLISRKKQTANMFLFQRILLRDPEYSNLLLRMIVFALLLIFIIQDYKLNTFLAA IVIFLTIYQLLPVANIYERNMMYHVQPISRSSRAVDLAKVLQKFILLQWLLISIGLVIAS AGNLQSLLYILGLFVLTLILLYVYLPVKIGQTINKFKR >gi|311092221|gb|AEKJ01000010.1| GENE 75 81909 - 82658 264 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 3 211 9 218 309 106 31 6e-22 MTLTIKKLTGGYTGITVIKDINLKIESGQVVGLIGLNGAGKSTTIKHLLGLLRMQRGEIT LNGIDLVQNPAAFKKNVAYIPETPILYPELTLKEHIELVILAYGLDHDSAYERALHLCKL FRLENKLDWLPINFSKGMKQKVMIVAGFLAQSSLLVIDEPFTGLDPLAVANFIDLVKAAS NDGKMVLMTTHVLAEAQEIVDKFAVLNNGTIEKEGNLTEIRKFYGLKDTDSFDRLYKVLN QEHRNAKNS >gi|311092221|gb|AEKJ01000010.1| GENE 76 82749 - 83186 577 145 aa, chain + ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 5 140 1 135 140 142 50.0 3e-34 MSNLVQDCIFCKIIRNEIPAYTVFENDDVKAFLDISQVTKGHVLIIPKKHLINFFDYSQE DAAKYLQYIPKIAQAIKASDKNIKGLNVFVNNGEIAGQVVMHSHIHLVPRYGENDGVNVP HINHAAEYTPEAYQEVANTIKQHLS >gi|311092221|gb|AEKJ01000010.1| GENE 77 83198 - 83509 479 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259501418|ref|ZP_05744320.1| ## NR: gi|259501418|ref|ZP_05744320.1| hypothetical protein HMPREF0520_0928 [Lactobacillus iners DSM 13335] hypothetical protein LineA_02470 [Lactobacillus iners AB-1] hypothetical protein HMPREF9213_0698 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_0066 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0466 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0971 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_1123 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0892 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9216_0591 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9223_0136 [Lactobacillus iners ATCC 55195] conserved domain protein [Lactobacillus iners UPII 143-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF0520_0928 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_0698 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_0066 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0466 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0591 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9217_0892 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_1123 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0971 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9223_0136 [Lactobacillus iners ATCC 55195] conserved domain protein [Lactobacillus iners UPII 143-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 103 1 103 103 174 100.0 2e-42 MKKSTIGLIIGLSAGICWGLKKRRPNKQDEAYFKQWSTSLISNCTNTKNGISKLKKQCDA LISEQMPIANQTIQELKDSFGKYSIAIKPKIAKMENSIKQLNK >gi|311092221|gb|AEKJ01000010.1| GENE 78 83600 - 84493 928 297 aa, chain + ## HITS:1 COG:lin1482 KEGG:ns NR:ns ## COG: lin1482 COG0760 # Protein_GI_number: 16800550 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 11 290 7 281 294 140 33.0 2e-33 MQFKKSLKTLLLIAAFSGVALTATGCSKTVANYKGGKITQEDFYNKVKKSPAGQAILANM IINRTLQQQYGSQVSKKKVNTAYDNARKQYGARFEMVLQQNGMTPEAYKESIQTNLLLQA ALKDIKPITKAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGKGASFKDLAKKYSTD TGTSKNAGKIEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGS FQSHKSEIITRIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVLTQYMDADLKK >gi|311092221|gb|AEKJ01000010.1| GENE 79 84619 - 85596 1099 325 aa, chain - ## HITS:1 COG:SP1980 KEGG:ns NR:ns ## COG: SP1980 COG3481 # Protein_GI_number: 15901803 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 19 312 12 305 308 263 44.0 2e-70 MKKKLVTYNDGESMDIIVLIKDAILRKNKKNEPYLVLIFSDGDSYIRGNLWNVADDDVAK YVAGTFVQLNGIKEKFQNHYQIKILSMQTVGSSEVTNITDFTEKSYIDVNELVSELKDGI LEIKNPIWKSIVSFLLDKWYQKFIDFPAGKSNHHACKGGLLLHTVTMLKLAVAISKIYPQ VNHSLLYAGCILHDLGKVIELSGPVATKYTVEGNLLGHLVIIDEQIILAAKELKIKEYDE DLVLLRHMVLSHHGLPEYGAARRPAILEAELLHKIDDMDATVYAITKSLQRTEPGTFTEL ISSQDNRRFYRPIDSSDLNKINNLE >gi|311092221|gb|AEKJ01000010.1| GENE 80 85598 - 87991 2251 797 aa, chain - ## HITS:1 COG:MA2362 KEGG:ns NR:ns ## COG: MA2362 COG4717 # Protein_GI_number: 20091195 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 485 786 970 1285 1300 90 24.0 1e-17 MKLIKIDVENFGGLSDSEWKISSQLHVFYGPNEAGKSTIAAFIKQIMFGFHLKSQKSTFF ENYMPLKKVNQVGGSLTFKNENNQIITLERTYTTSDSKKGNLAVSLDNEKIPENVFWNNI KNIDGDFYTDSFIFNQDLLANVISLNQGDLLEHIYYLGAAQSSKLLLLRDKFVQSSEKLF KTNGRKPEINQILAQIKEKAETLSKQQVEFDQYSYLEKQKNDVQNEIELLNSQVKKLQQN QQNLAITKQELNNYTQYQQLKEQYQLIDFNQEDYTQAQALELTIEQLTTDIKNYESEIIA VSADNLDEQAKILAKKVEIYQIVNEADRLQNEIKQLCQELEQIQTYQPLYFKLESLSPED KVVMRSKYEQCLKTQAPKSIIKNISFGLIIFGLVGVFLKPLFYLLILSGLIIYYLNKIKT DHIRTNQIKSFEQEYGFDPQKFDLELVMSQIMQIENKRNILAEKRKKQAQIMEQVADFKQ KISQFVSPTNNLTSDLEKLDEHYQQVQQKVTTQKLLNEKISAIKAKLADVKLTLQKKLSQ NKVKDIEEFKAKSQLYSQNQQIKSQMMALFANLKDRVEILSKLDINSLHTTEQSLVSELE QIQAKLRIKYDALAQLKLKLKELTNSDSLKRTQQELATANANLLDYTKEYLADLLAADWI QRGLDLASNDRFPKMLSSTNQYFALLTNGRYTKVAINDQIQVVKADGTSVAVEYLSRGTA EQLYFALKLAFVEQIADEIELPILIDDAFVNFDLQRIDNIVKLVQNLSAKTQVIVFTQNL QLAKMLTDNITKLEIRN >gi|311092221|gb|AEKJ01000010.1| GENE 81 87978 - 89201 1064 407 aa, chain - ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 276 4 281 411 178 36.0 2e-44 MKFLHIADVHLDSPFLGLSFLPSELFCQIKNAIQLSFEKAVNFAIDHDVDLVLLAGDTFD SIHPTPQSKIFFANQIKRLVDRQIQVVMVLGNHDYSQIDDLLLNESPYFKIIGSNEQIEQ VDFMTKSQYKYRVVGFSYQHNHITEDIIAKYPPKSTSIYTIGLAHAGMKQSSVDQNNYAP FTLNEVKNLNYDYFALGHIHLRQVLSQEPWIVYSGNLQGRHVNEKDAKGFYFGQVDEQSQ NTQLQFIDVSPIVWQTVDLILDEPFKSTTKLCAKIQNLLADNNLRPTLFTVNIIGAELLS DAQLDMLNDKSMYEELSDNLQYHSLLVKVYYKHRDFIALNATDRALFAKAAEEILTANHT CELASSLMKKSNIVTNNLQKEEYLSDIYELARVRLEQKLRGNNDEIN >gi|311092221|gb|AEKJ01000010.1| GENE 82 89211 - 89561 424 116 aa, chain - ## HITS:1 COG:no KEGG:lhv_1666 NR:ns ## KEGG: lhv_1666 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 116 1 115 116 78 40.0 1e-13 MINIYDSVNELTANFEKTEEFVALRDAINAVKANENSLKLYHHMEEIRNKFIAEQEKGNS EMSAELQKEYKEVEAQIGQDELIKNMMVHETAVYQLLNDIQKSLTDPISNLYDALK >gi|311092221|gb|AEKJ01000010.1| GENE 83 89581 - 91659 1866 692 aa, chain - ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 2 669 1 677 714 583 46.0 1e-166 MITKIKEEILKLLGMLFYFLKRITHRFQLIRWLILACLTVILVVSTYYTIKVKTSNISTL KASLSTTTTIYDADNHQAGSLYAQKGSFVELSDISPNIQNAVISTEDRTFYKNPGFSIKG MVRALLMSMLHRGIVGGGSTLTQQLAKNALLTQKQTISRKIEELFFAIEINHVYSKRDIL TMYLNNAYFGNGVWGVQDASKRYFGKNASELNISEAATLAGMLKSPSYYNPIDHMQNALN RRNTVVNLMLQNKKITKSEADNAQHSVLSLKNTFRQKSGYRYPYFFDAVVDEAIHRYGLK EEDVMNKGLKIYTTLDQSYQKAIQDSFEIDGNFPATAADGVMAQGASVAVDPKTGAIRAV VGGRGRHVFRGYNRAMQMKRQPGSSLKPLAVYAPALQNGYHYDTSLSNKLQKFGKNGYEP HNVDNQYSDTIPMYQAVADSKNVPAVWLLDKIGINRGVQSMQNFGIKVPSDDKNLALALG GMSAGVSPLQMATAYSAFANDGNLPDQTYLIRKITDANGKVISQKSNDRYHRIISHRVAE EMTMMLLGVFSNGTAVSAQPAGYEVAGKTGSTEVPNSYGFGTKDQWIVGYTPDIVVATWV GFDKTDKEHYMHGISENGITRLYKSQMESLLPNSPLTKFKVKSAQQNEYASHTDDNDLKS SDSFQDKIKKGIDGLGKKVTEWYNGLKGLFKH >gi|311092221|gb|AEKJ01000010.1| GENE 84 91720 - 92598 839 292 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 14 291 2 281 285 327 59 1e-88 MNTIEKQVIMNQYIYYLTISQNENNQNVDQIMRNLLIPRKWRHFLRIEKNILVNNKYLPL NFKVHTNDLITIKLNHVESLQQQYPASGNMPNIIYENDDVLVINKPAGQKTHPNLYETDT ALNDCASYLGYSPYIVHRLDMLTNGLLLVAKNPAVVPILNKQLIDKTLYRSYFAWIEATN DISDNGTINLPIGDDPLDMRKRMVRADGLKAITHYQVVKKTANKILVKLQLETGRTHQIR VHLAAIGHPIIGDPLYNSNYQAGEKLQLTAYKLVFQKPFSFDKEEVLLDKKI >gi|311092221|gb|AEKJ01000010.1| GENE 85 92684 - 93598 1115 304 aa, chain - ## HITS:1 COG:SPy1889 KEGG:ns NR:ns ## COG: SPy1889 COG0191 # Protein_GI_number: 15675705 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pyogenes M1 GAS # 4 284 3 289 293 297 54.0 2e-80 MAYLVNGNDIFKAARKNHYAVGAYNTNNLEWTRALIKGAKETRTPLLIQVSTGAAKYMGG YKTVRDLVLNEMDNMDVDVPVILNLDHGDYESAKECIALGYSSVMFDGHKLPVEENLEKT KEIVKLAHERGISVEAEIGKIGENQGADGGELASVEDAKRFVAAGVDKLACGIGNIHGVY PADWKGLNFDRLKEIADAVDVPLVLHGGSGIPQDQIKKAISLGIAKININTEFQLAFQEA TRKYIEAEKDLDKANKGYDPRKLLRAGTDAITESMKEMISWMGTRPIDGKDSVVKFDEAS LNEE >gi|311092221|gb|AEKJ01000010.1| GENE 86 93694 - 95370 2060 558 aa, chain - ## HITS:1 COG:SPy2151 KEGG:ns NR:ns ## COG: SPy2151 COG0018 # Protein_GI_number: 15675893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 558 1 563 563 642 58.0 0 MDFKQEVVETIAKVVSLPKEKIEALIERPKNVKLGDYAFPTFALAKIEHKNPAVIASELA AKLVNDNFAEIVAVGPYINFAIDHAKLVSVTLKKVLADQDKYGDQDNNQGNVPIDMSSPN IAKPMSMGHLRSTVIGNSIAKILQKIGFTPIKINYLGDYGTQFGKLITAYKLWGNEEAVK KDPITNLFHYYVKFHEEAEKDPKLEDEGRAWFKKLEEGDAEAVELWQWFREVSLQEFNRI YKELGVTFDSYNGEAFFNDKMQPVVDELRAKNLLHESRGAQVVDLDDDENPALILKSDGT SLYITRDLAAALYRKKEYDFAMSLYVAGNEQSGHFKQLKQVLGKMGYDWQKDIHHIPFGL ITQNGKKLSTRKGNVVFLDNVLKDAVKLALEQIEAKNPNLANKEQVAHQVGVGAVIFHDL KNERLDNFDFNLNEVVRFEGDTGPYVQYTNARAQSILRKVNVAIDDTKLALSDDWAFAVA KDIADFPAIIQKAFEKFEPSVIAKYSLNLSKKFNKYYANVRILNQDDELNARLALVQATS IVLTESLRLLGVDAPKEM >gi|311092221|gb|AEKJ01000010.1| GENE 87 95632 - 96909 1102 425 aa, chain - ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 54 400 32 382 443 223 39.0 7e-58 MKLKNNNSFKNYQIIIFLVAFVCLIIFGWKVFRYRRAYVEVPTQFKTEICDNYAQDNLAL NAKAAIIYDLKSGQIMYAKNITQKLPVASMSKLLTIYLTLKAIKAGKISWQTKVMPSREA IAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQL LDWHISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKHLLLEFPQVLETT RIAKLDFLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRR IVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNRPINEV RACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLIFPNIPALNNENALAFDATT SKELK >gi|311092221|gb|AEKJ01000010.1| GENE 88 96893 - 99178 2267 761 aa, chain - ## HITS:1 COG:alr4773 KEGG:ns NR:ns ## COG: alr4773 COG1501 # Protein_GI_number: 17232265 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Nostoc sp. PCC 7120 # 8 743 29 761 779 543 36.0 1e-154 MDFLDNKQHLIITNNQQKLKVDIITADIVRIYTDSDDKKSAAIEGNKKIDVDYKVFEKED QLEITTNRLKLLVKPDLRFDLYDYDGNSLIKNYHGELKPLDRGLTPEQRKLAEAEGHLIS ADSSAGSIMFVNELAEDEQFYGLGDKTGFLNKRGYEYDDWNTDNPKPQVESFTKLYKSIP FLIGVKNSHPYGIFVDNTFKAHWDLGKESNDYYYYSSEKAELDVYLIVGATIKNIVSNYT YLTGRTPLPQKWTLGYQQSRWGYSATQEEVERIAGLLRKHKLPCDVIHLDIDYMDGFRVF TWRSDSYTDPHDFVKKLNQMGLHVVTIIDPGVKLDKNYGIYQEGLEKGYFVENPDGTIYV NEVWPGDSVFPDFGREEVRSWWSKNIKFLVNLGVSGIWDDMNEPASFRGEIPDNIVFHHE EIPTTHAQMHNVYGHYMDKATYEGLKKLTNKRPYVITRAAYAGTQKYSTVWTGDNQSLWP HLQMMVPQLCNLGLSGFSFAGTDIGGFGADCTAELLVRWIEGAIFSPLLRNHAAMGTRSQ EPWTYPTPTLSIYRKYLKLRYKFISYLYDLFYQESKTGLPIMRPLILNYPADQKVSNMND QFMVGDQILVSPVLQAGATAKMVYLPQGKWHDYWTGDVYDGNQYIVKDAPLDVLPIFVKD NTLLPVDHYENYVDCQKYDQITFKLYGTQAEYDHYQDNGLDFDYQLGKYNVYHVYADENA AEVTLIHSGYDRHYQKIIVELNGKKLKFAYKSDGDKYEIEK >gi|311092221|gb|AEKJ01000010.1| GENE 89 99182 - 100051 342 289 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 [Vibrio cholerae MZO-2] # 5 276 224 485 490 136 35 5e-31 MMKKIEENILYETITPRKSNTHKGDYGKILLIGGNINFGGALIMSAEGALGAGAGLICAA THSINVASLHARDPEIMYVDWRDEQNLSKLIPQMDVIVCGMGMGIDAGAQKILQLVKATV TNNQIVVLDASALDIIATDTSVIAHQAKKIIITPHQIEWQRLSNIRVQYQNDSANQTALN GLFPQKNCILVLKSNKTKIYDQFGNILENPLGNPGMATGGCGDTLSGIIGGICGQFGGEL NAVASAVYLHSLAGDIIYRKNYIVRPTAISALLPQLLKKYEYNNNDVER >gi|311092221|gb|AEKJ01000010.1| GENE 90 100427 - 100708 432 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501431|ref|ZP_05744333.1| ## NR: gi|259501431|ref|ZP_05744333.1| toxin-antitoxin system [Lactobacillus iners DSM 13335] toxin-antitoxin system [Lactobacillus iners DSM 13335] # 1 93 15 107 107 152 96.0 6e-36 MRTVNLKQWGNSMAVRLPKSVLTQAGIGNSPTVFDISVNNAKEIILRKKKKPQNLKELFK GFDYKTYWAEWNQEHSGKSKEINWGESVGREKF >gi|311092221|gb|AEKJ01000010.1| GENE 91 100883 - 101047 200 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309808153|ref|ZP_07702065.1| ## NR: gi|309808153|ref|ZP_07702065.1| hypothetical protein HMPREF9211_0065 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9219_0987 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_1139 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0908 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9216_0607 [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF9211_0065 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9216_0607 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9217_0908 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_1139 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0987 [Lactobacillus iners LEAF 3008A-a] conserved domain protein [Lactobacillus iners UPII 143-D] # 1 54 1 54 54 64 100.0 3e-09 MAEDVNKLTAKEVGAIIQARYNSEMLQPETEEDRRVVKERLKKIEEYRKKHLRN >gi|311092221|gb|AEKJ01000010.1| GENE 92 101162 - 101374 302 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312870850|ref|ZP_07730955.1| ## NR: gi|312870850|ref|ZP_07730955.1| hypothetical protein HMPREF9219_0988 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_1140 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0909 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9216_0608 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9216_0608 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9217_0909 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_1140 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0988 [Lactobacillus iners LEAF 3008A-a] # 1 70 1 70 70 120 100.0 3e-26 MNSKEIQENVVKAVENCGLAIYKNAPKIVGNYPHQTGEVTISISMDGNLKGPIATIKVQN EFLNILDSNS >gi|311092221|gb|AEKJ01000010.1| GENE 93 101452 - 101664 196 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309808145|ref|ZP_07702057.1| ## NR: gi|309808145|ref|ZP_07702057.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a] conserved domain protein [Lactobacillus iners LEAF 3008A-a] conserved domain protein [Lactobacillus iners LEAF 2062A-h1] conserved domain protein [Lactobacillus iners LEAF 2052A-d] conserved domain protein [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners UPII 143-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners LactinV 01V1-a] conserved domain protein [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners LEAF 2052A-d] conserved domain protein [Lactobacillus iners LEAF 2062A-h1] conserved domain protein [Lactobacillus iners LEAF 3008A-a] conserved domain protein [Lactobacillus iners UPII 143-D] conserved domain protein [Lactobacillus iners UPII 60-B] # 1 70 1 70 70 131 100.0 2e-29 MDKVKEFAKQHGYETAEYLGIYQNKEAYEAIYSDDNEICFVGLPAIILKSGAELEWIQNN LSRKILRKFY >gi|311092221|gb|AEKJ01000010.1| GENE 94 101765 - 102175 316 136 aa, chain - ## HITS:1 COG:no KEGG:Mahau_0569 NR:ns ## KEGG: Mahau_0569 # Name: not_defined # Def: hypothetical protein # Organism: M.australiensis # Pathway: not_defined # 2 135 393 526 559 124 45.0 8e-28 MYRINCQTCVVAYEARRRGYDVEAKGNFSGSISQMLSRATNKAWIDPNTGKYPEYIAPEY FSNINTPSRYMKYLEETLKENTRYTMQFGWKGRGNSGHIIHVFKKNGVVTLYDPQIGQTT NKVKEYLEDVKMTTTS >gi|311092221|gb|AEKJ01000010.1| GENE 95 102221 - 102721 427 166 aa, chain - ## HITS:1 COG:no KEGG:SSUST3_0457 NR:ns ## KEGG: SSUST3_0457 # Name: not_defined # Def: hypothetical protein # Organism: S.suis_ST3 # Pathway: not_defined # 5 166 123 283 406 101 34.0 1e-20 MDEVKAKNLVEVVCNAERYSEVAPKVEQAMTSFARSVVADTMKKNVELHYKLGLSPKIVR KLGRGSSKKRSTSGTDCEFCTERVGTFPYNKDNINKGIFSRHAHCTCTLEYFPGNGKKQN SWSKRWENVGEDDKIEERKLISEAKTENAMFPKELAGAKRGNLMTF >gi|311092221|gb|AEKJ01000010.1| GENE 96 102631 - 102924 133 97 aa, chain - ## HITS:1 COG:no KEGG:LJ1455 NR:ns ## KEGG: LJ1455 # Name: not_defined # Def: Lj928 prophage antirepressor # Organism: L.johnsonii # Pathway: not_defined # 1 66 109 172 253 89 71.0 4e-17 MTDKKAYDITHDRSGATLADLLQQAADQLKQKDIQIAEMKPKALFAYAVATSNRSILVGE LAKLIRQIWMKSRLKILSKLFVMLNDIQRLPQKLNKR >gi|311092221|gb|AEKJ01000010.1| GENE 97 103146 - 103325 182 59 aa, chain - ## HITS:1 COG:no KEGG:LM5578_p11 NR:ns ## KEGG: LM5578_p11 # Name: not_defined # Def: phage transcriptional regulator, Cro/CI family # Organism: L.monocytogenes_08-5578 # Pathway: not_defined # 3 59 1 57 78 65 57.0 5e-10 MQITLKAARVNKGLTQREAAKYLKVNFQTISKYEIDSSKIPMKLLKDMCSLYKIPMNYI >gi|311092221|gb|AEKJ01000010.1| GENE 98 103605 - 103778 120 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309803446|ref|ZP_07697540.1| ## NR: gi|309803446|ref|ZP_07697540.1| conserved domain protein [Lactobacillus iners LactinV 11V1-d] conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners LactinV 11V1-d] conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners UPII 60-B] # 1 57 1 57 57 100 96.0 5e-20 MVYADNPYLAWEFLEHKGFEKYVKNTTYRITDKGIQYLEDLFYIQILVERRLMSEKK >gi|311092221|gb|AEKJ01000010.1| GENE 99 103938 - 104087 153 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309803455|ref|ZP_07697549.1| ## NR: gi|309803455|ref|ZP_07697549.1| hypothetical protein HMPREF9214_0100 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF0523_0333 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9214_0100 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF0523_0333 [Lactobacillus iners UPII 60-B] # 1 49 1 49 49 79 97.0 7e-14 MNKKKWLGVWTLTSKEKKDGRHIEGEFKAGIIPSVALIVLLIYVLLKLI >gi|311092221|gb|AEKJ01000010.1| GENE 100 104177 - 104353 185 58 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312870862|ref|ZP_07730967.1| ## NR: gi|312870862|ref|ZP_07730967.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] # 1 58 1 58 58 81 100.0 2e-14 MQINLRRIKAERVFKKISQAQMAKKLGISRTSYAKKEEALERLLLKVQIHDFDYINRI >gi|311092221|gb|AEKJ01000010.1| GENE 101 104521 - 105189 548 222 aa, chain + ## HITS:1 COG:SPy0657_1 KEGG:ns NR:ns ## COG: SPy0657_1 COG1396 # Protein_GI_number: 15674725 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 100 1 105 123 87 43.0 3e-17 MRNNEEIMQLLERLKADKKMSLREISRKTDIAVSSISRYFNRTRDFPLDKLDRFAKAFNV SPEYILNVSKPCDITTIYNQLHEKRKAKVYNYAKEQLDEQLNEKRSIYVVGTSAAGEPIE YGDFDSEMIQTDVPAKADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGEIGIFEINGSA VTCKKYYVDYESKKIILKSINPKYEPMYFARDQVRILGKVVF >gi|311092221|gb|AEKJ01000010.1| GENE 102 105263 - 105982 732 239 aa, chain + ## HITS:1 COG:L0250_2 KEGG:ns NR:ns ## COG: L0250_2 COG1974 # Protein_GI_number: 15672420 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Lactococcus lactis # 81 239 36 191 191 89 35.0 6e-18 MPRNKLSPFEQNARKEISSNLKKFMHGMTQADLAEKSDIPLTTLSGYLREKSTPNSGNLE KLAIALNVKKSDIDPRYTFTDIMDFVEKAPLGEYISPVSNVEYLYNTDTVVKQIPLLGDI ACGDPITADENIEDYIPETYTRGNVPSGTLFALKTKGHSMEPTIPDGSIVIIRQQPNVED GEIAAVLVDDDARATLKRIKHSNDAVILQPDNREYDPIVLTPNFPGRILGKAIEVKTKL >gi|311092221|gb|AEKJ01000010.1| GENE 103 106025 - 106342 400 105 aa, chain + ## HITS:1 COG:no KEGG:SPJ_1901 NR:ns ## KEGG: SPJ_1901 # Name: not_defined # Def: cI repressor # Organism: S.pneumoniae_JJA # Pathway: not_defined # 3 104 2 110 250 103 58.0 2e-21 MNNILGSVIKEIRKDKKITQSELARLTGFKQNTISNHENGKRSLDECDIYTYAKALNVSP QTFFDKYTNQDKDILSIYNQLHDERQAKVYNYAREQLDEQLNEKR >gi|311092221|gb|AEKJ01000010.1| GENE 104 106369 - 107685 1230 438 aa, chain + ## HITS:1 COG:SPy1861 KEGG:ns NR:ns ## COG: SPy1861 COG1396 # Protein_GI_number: 15675680 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 210 323 8 121 124 90 48.0 9e-18 MVKHAPQYYENLNYFNTQLNHLMSVHGTKQVDLVNALDIPKTTINGYVKGTSLPNMGNLQ KLADYFNTLKSDLDLRFKKDADKHLPVYNQLTDIRKHKMIKMSNLDNKETMAQNIKYYLK QKGVSRHKLCDDLNIKYTTFCTWLQADAYPRIDKIEMMANYFNISKANLVEDKDAIKNDI TTIYNQLHEKRQAKVYNYAREQLKEVVDMFSTNLKYLRKKYNMEQLELAYKLGRKSGSTI SEWEKGSYTPKIKVLAQIADIFHVDLDDLMNKDLTNSQTKVDKDSLVEQIAETSSLLHIS RQAKVYNYAREQLDEQLNEKRSIYVVGTSAAGEPIEYGDFDSEMIQTDVPAKADKAIHIK GDSMEPKIASNSIIFYHEQPTLEIGEIGIFEINGSAVTCKKYYVDYESKKIILKSINPKY EPMYFARDQVRILGKVVF >gi|311092221|gb|AEKJ01000010.1| GENE 105 108070 - 108774 752 234 aa, chain - ## HITS:1 COG:lin2198 KEGG:ns NR:ns ## COG: lin2198 COG0235 # Protein_GI_number: 16801263 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 6 223 2 201 216 161 41.0 9e-40 MTEKFIFEDERRDLARIAKLFFDRNRTNVAGGNISEKIIPKEDYIYDNICIKANHPYIIM TPTMMSEAWFGDLEASQILVVDLDSGEKIDGVGRLTREINLHEEAYKANPNITVVYHSHA PKSMFWATCGLDEPNVTEITNVQVPLGKLKCLHYSPACTKELADTVREELLNRPNQIDNF LLLDSHGVLITTNDLHRAAMILEVTEWNAEIAYKQAVFNKLGLLDGYHSCGKKI >gi|311092221|gb|AEKJ01000010.1| GENE 106 108846 - 109034 73 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501441|ref|ZP_05744343.1| ## NR: gi|259501441|ref|ZP_05744343.1| hypothetical protein HMPREF0520_0951 [Lactobacillus iners DSM 13335] hypothetical protein LineA_02340 [Lactobacillus iners AB-1] hypothetical protein HMPREF9213_0608 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9219_1003 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_1154 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF0520_0951 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_0608 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9218_1154 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_1003 [Lactobacillus iners LEAF 3008A-a] # 1 62 1 62 62 64 100.0 2e-09 MKTKKIFWNFLLLLNIIIFIIAILNHVLYLSILVIFLSALIRFKGNKFMYDKLDVSHQHK LQ >gi|311092221|gb|AEKJ01000010.1| GENE 107 109051 - 110616 1713 521 aa, chain - ## HITS:1 COG:lin2200 KEGG:ns NR:ns ## COG: lin2200 COG3775 # Protein_GI_number: 16801265 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Listeria innocua # 1 439 1 439 449 397 48.0 1e-110 MQVLQSVVQWVLNLGSNVFVPFIMFIIGLAAGLKFKKSFVAALTLGVAFTGMTLVVNYMT SIITPAGKAMSKALSVSLTATDLGWTGVAAITWTAKVAFLFFPLLLVINFIMLALNWTKT LNVDMWNVWNKIFTYVLVYYMTNSMLFGFLVAGLQIIFELKAGDVFQRHIQDLTGMEAIT VPHFITLFAVILMPLNRILDFFPIFNKPFDAEHIQKKLGIWGRNDTMGFIIGLLLGFGAG YGLSKSLTLGIEAAAAMSLFPMISKLFMEALNPIAASMGKFMKNHFKDREVYIGVDWPVL AGRSEFWVTLIILVPIELIFAMILPKNNVLPFAGIINLSFGVAALILTGANLLRMIVLGI ITTPIFLYGGTYFAPMITKMAQTTHAVKVPAGTQISWSSFEGPDFRMLFGQAFSCKWWAI IGAIVWTLLFIWMYRYVSKAPLPSQRYHMNLDTEEVSDTTNAISSESVISDDYKSIDLHE LDGKDLSNKKHVIPNLRRSNEDYKSVGLHDIDGKDFSALRH >gi|311092221|gb|AEKJ01000010.1| GENE 108 110635 - 110943 409 102 aa, chain - ## HITS:1 COG:no KEGG:lp_3600 NR:ns ## KEGG: lp_3600 # Name: pts36B # Def: galactitol PTS, EIIB (EC:2.7.1.69) # Organism: L.plantarum # Pathway: Galactose metabolism [PATH:lpl00052]; Phosphotransferase system (PTS) [PATH:lpl02060] # 1 101 1 101 103 117 58.0 2e-25 MASIVVACGSGVATSENVVGIIKSFLEEHNITGVKVNATDFKQLADILPQYDIYVWIAKP TQEIMDICSKNGIIDVNGVNILTGNNDEDSYKKIIWGLKRLI >gi|311092221|gb|AEKJ01000010.1| GENE 109 110961 - 111431 583 156 aa, chain - ## HITS:1 COG:lin2202 KEGG:ns NR:ns ## COG: lin2202 COG1762 # Protein_GI_number: 16801267 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 4 155 1 153 155 92 33.0 2e-19 MTTIDYKNMIQKDCIFLNLKVADRHELFEQVGEKLKHIGYVKDTYVDALNEREAEFPTGL MTKYLPISLPHVDSVNVNRAFIAVVKNDKPIHMLQMGSNEDMQCEYFFFLGITDSSHQVI LLQKFMQLLRDKSFVDRLICINNVDDMFEFMQEKFN >gi|311092221|gb|AEKJ01000010.1| GENE 110 111594 - 112358 556 254 aa, chain + ## HITS:1 COG:ECs4266 KEGG:ns NR:ns ## COG: ECs4266 COG1349 # Protein_GI_number: 15833520 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1 232 1 231 252 107 30.0 2e-23 MKSSQRINKLIEILKDHPTIHITTLQKNTNTPISTLRRDLMILEQQHLIKREAGKIILLK QENIEYAWLYRENKNILLKDKLCKTASNLIQNNNAIFIDSSTTCTKLATYLNNFSNLKII TNNLIVASQLQNHMNFSVFISGGLIKPYSQSVLDNEAIRFIHQFKTKYAFVSCSTIDLSG LYMADLLQAQVKREAIKQSEKTVALIDSSKFKNNQDFIKLCDLSDIDILITDKKITDTKF INFCKVHNIQIINS >gi|311092221|gb|AEKJ01000010.1| GENE 111 112503 - 113069 683 188 aa, chain - ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 180 1 184 199 132 42.0 5e-31 MVKTLYIVRHGQTFFNFHHKTQGSCDSRLTALGIRQAKAAGDYFRKQKINFDAAYCSTQE RASDTLELITDHKMPYTRLKDFCEKDYGIFEGADEYTLPWNGDKLDAPSMERDDHVVERM VNGLKRVQEETEDGQNILIVAHGDIIAMFSKLYNSNIPHFSCCSFVKFLYDKGTYTFAGF YEPAIDVE >gi|311092221|gb|AEKJ01000010.1| GENE 112 113093 - 114721 1530 542 aa, chain - ## HITS:1 COG:lin1665 KEGG:ns NR:ns ## COG: lin1665 COG2244 # Protein_GI_number: 16800733 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 15 541 5 536 537 311 35.0 2e-84 MNNNNQQTENSRISLLKGSAWMTLGSIFSRVLGAIYIIPWYAWMGTHGNVANALTAKSYN IYSLFLIISTAGIPGAVAKQVAKYNAINEYGIGRKLFKHGLFLMMIFGIVSAFVMTIASP ILAGNDSRQIPVLHSLALAVLIIPILSIMRGYFQGYNDMMPSALSQLVEQIARVAWMLFT AYLIMQVQHGSYLTAVIQSNLAAAVGAFFGIALLVLFLLKRKSNDDKLILSSNNEIEVST QSLFKEIIGQSVPFIIIDSGITFFQLMDQYTFHPIMNNLVHVSYDQIESWYALFGLNANK LIMVIVSLATAMAMTAIPLLSGAHAKKDYKDISRQIENTLELFLFFMIPASLGMAAVSVP VYTIFYGADPLGANILFLSGIAAMFLGAFTILMAILQGLSENGLAIKYLLIGIIIKSIFQ WPSIKLFQVYGPLISTIIGLIFTITFALMHLRIKYKYNYKRTKKIFLAILIISLMMFMLS LIFVVIAGKLLNPEHRINALILATGGSIIGGLFYFYITFKLKLAQKVIGNKVERLAKKLH IC >gi|311092221|gb|AEKJ01000010.1| GENE 113 114743 - 117157 3037 804 aa, chain - ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 2 803 3 802 803 1154 67.0 0 MYNHKVVEKKWHQYWSEHKTFKTGTDPNKKNYYALDMFPFPSAKGLHVGHPEGYTATDIL ARMKRAQGYNVLHPMGWDAFGLPTEQYAIKTGRDPMDVTNENIANFKNQLTQLGFSYDWD REVNTSDPAYYKWTQWVFEQMYKMGLAYEAEVPVNWSPDLGTVVANEEVIDGKTERGGFP VYRRNMRQWMLKMTAYADRLLEDLDDLDWPEPIKEMQRNWIGRSYGAQITFQVENTNLTF DVFTTRPDTLFGVSYTVLAPENELVKKITTEEHQADVEAYIKKIESKSDLERTDLNKDKT GVFTGAYAINPINGDRVPIWISDYVLASYGTGAVMAVPAHDDRDYAFASKFSLPIKEVIK GGDVTQAAFVGDGEHVASGFINGLHNEEAKNKIIEWLEEHKLGKRTVNYKLRDWDFSRQR YWGEPIPIIHWEDGETTLVPEDQLPLILPHATNIKPSGTPESPLANLTDWINVVDENGRK GKRETNTMPNWAGSSWYYLRYIDPHNTEKLGEYELFKKWLPVNMYVGGAEHAVRHLLYAR FWHKVLYDLGVVPTKEPFQKLYNQGLILKDHEKMSKSRGNVVNPDDIVEEYGADSLRTYE MFMGPLDASIDWDDNGPASIKKFLDRVWRLMVNDLDVKAVVSDKIVEENDGQLDKVYNQT VKKVTEDFEALHFNTAISQMMVFVNEAQKATSIPRAYAEGFVQLLAPVAPHMMEEIWQIL GHDESISYVKWPSYDESKLIESVVEVMIQINGKLRGKIKVKVDTAKEELEKQALADQHVQ KFLADKEIRKIIVVPNKIINIVAK >gi|311092221|gb|AEKJ01000010.1| GENE 114 117443 - 118909 1420 488 aa, chain - ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 6 486 3 487 491 349 42.0 6e-96 MNKARHTNIKIITCAIFLTTFMTAIEGTIVSTAMPTIVSDLNGLEIMSWVVSIFLLMTAV TTPIYGKLADSFGRKPVFLFGILIFVIGSSLCGLAQNMFQLIIFRTIQGLGSGAIQPVAI TMLADLYPIDKRSKILGLNCGFWGVAAILAPLLGGFIVQHLSWHWIFYINVPIGIAALIM VQVYFIEKKVNKIVSLDYAGSAILIVFLLSLMLFLQFLDQPGTLLLTIALLVISIFSFVL FFSVEKKAKDPIIPLSIIKNKEFICHSLITLLISGVVIGFEFYIPTWMQGINGVSSSMAG FAVTPSSLLWIVGSFISGTLMFRYGTKKLFDVFLAVLLLADICLLFVPIYTPLWVFCVLA AVNGIGFGIIITVALMKSQLIVSPKDIGVATAFNTLLKFLGQTMMVSLFGVVFNTSIMTG LQKHPQLTQNMMNKIVASAKLSQLDPKFVPQLRMVLINALKSGYWVALVLIVVSFLLNHL YKEKRIKK >gi|311092221|gb|AEKJ01000010.1| GENE 115 118902 - 120107 1706 401 aa, chain - ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 1 393 1 393 400 552 69.0 1e-157 MKQEKHLFTSESVSEGHPDKIADQISDAILDAILAKDPNGRVACETTVTTGLVLVVGEIS TLAYVDIQSIVRKTINEIGYNRPELGFDASNCAILVDIDEQSSDIAGGVDNSLEVRSGNK GDDLLNQIGAGDQGLMFGFAIKETPELMPLPISLAHKIMRKTADLRKNGTLPWLRPDAKA QVTVEYDKDNKPKRIDTIVVSTQTDDVVSNDEIQNSIINDVIKKVIPERYLDEKTKYLIN PSGRFVIGGPKGDSGLTGRKIIVDTYGGYARHGGGAFSGKDLTKVDRSASYAARYVAKNI VAAGLAYRCEIQLAYAIGVAHPVSIMIDTAGTGVVDESLLVQAVREIFDLRPAGIIKMLD LNRPIYKQTAAYGHFGRTDIDLPWEHTDKVSELLDYVKNHE Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:29:38 2011 Seq name: gi|311092220|gb|AEKJ01000011.1| Lactobacillus iners LEAF 2062A-h1 contig00043, whole genome shotgun sequence Length of sequence - 555 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - LSU_RRNA 1 - 550 94.0 # AE017198 [R:1879440..1882488] # 23S ribosomal RNA # Lactobacillus johnsonii NCC 533 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:29:39 2011 Seq name: gi|311092217|gb|AEKJ01000012.1| Lactobacillus iners LEAF 2062A-h1 contig00021, whole genome shotgun sequence Length of sequence - 3869 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1660 1390 ## HMPREF0424_0005 LPXTG-motif cell wall anchor domain protein - Prom 1706 - 1765 6.6 - Term 1764 - 1807 8.7 2 2 Tu 1 . - CDS 1855 - 3867 2670 ## HMPREF9243_0633 LPXTG-motif cell wall anchor domain protein Predicted protein(s) >gi|311092217|gb|AEKJ01000012.1| GENE 1 1 - 1660 1390 553 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0005 NR:ns ## KEGG: HMPREF0424_0005 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: G.vaginalis # Pathway: not_defined # 76 519 45 483 920 336 42.0 2e-90 MVFNRRRSNLCYGIRKLAIGVVSMVISVAFLTEISVAQAKENTSNYQEHLVDKKASVADL TKTREKSKNQVESFRPLNQQDMIKLAKGQLTLPGGQVDPSFYHEPVLDVAGDDDHDGLKN GQELYVEKVNNREFLGYHTHPLLSDSDGDGLLDADEIKNHTNPLVWNICDRDLAMMMELS YRDDNYIKQVLDSHHPLKEKYNGRQEYELMHTELAPFWKAEKSFHESDGFDATFFVTHSD LPYLKDNQVQVLAIRGTKGGADLDDDLNLTLGMTPGQVDSLNKILKQLQDEGALTNTYLT GHSLGGYLAMTALVEARDKGYTGIKKAVTFNAPKIRGNLFNKKMQRVAKEANLLTQRGEA IHYAVSNDNVISAVGNFIGAKSVGNSANGHGSRTYFEDRIMQFGFKQGRRKSSMAGTGDQ EANLKKVLAGFSNPVVATQADAYPAKIKNHIVTEVGVIPDLTQCILNRNELPLAKVEDKT SSMHLYQPYQIGKGQCGSLSLTYQDGSKKTYFVTIDVQKAKPAGVVTSKGEPLMQETKPA GVVTSKVDPLVQK >gi|311092217|gb|AEKJ01000012.1| GENE 2 1855 - 3867 2670 670 aa, chain - ## HITS:1 COG:no KEGG:HMPREF9243_0633 NR:ns ## KEGG: HMPREF9243_0633 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: A.urinae # Pathway: not_defined # 4 286 2648 2902 3278 80 33.0 3e-13 KGSDGKDGQSITNATIDPNTGHLIVTIGEGADAKTVDAGQAKGADGKTPHIKVSDKVNGE TTITIDGYNDDGTAYHKEVKVSDGITYAPVATKGEDGVTTIRFYPVDPKTGKPDKTKQPV GGDVQVKDGVNGKDGKSVTSAYVDAKTGHLMITIEGQANPIDAGLVKGLSAKVDIKRNEE NTGVDITVTQEKWDNNGNLTKETTTNTVYDGVGPKIEVAEQGNSHIITITDQIRDREGIK DKPNAKPQVIEVKDGKDGETPTITKGEGKDENGHVFTTVTFTTSKGSTTVVIPNGKDGRD GKDCQGTCGICDNRDFKPVKFDARYDDGADLGRIQLRFIPVELGDRPSNVTAAVKHTRSR RSLGDQEVANAGLLNLMATSVLVGSDREAVDYPAEDKTVQGPIANTYKVEGLLDGMIFNP EDATITGKAKITDWKDGETKRRVPIRVTVYNSDGSTKVAESDIVVTRTLTSKPSVQGTST PDTSIPNPGKSMSYVGVVPGTRPYYTLKMIGRPLPKGIKFDSTTGTFTGTAKVDDWQDGE VSRIYPFVVTVVNCDGKQYKAEDSITIYRKINPEPAPVPEPTPVPEPTPVPEPAPVPEPT PVPEPTPVPEPMPVPEPTPVPEKPVSTDKTPTSGKEKLPQTGETSDIASLVAALCLAAGL VVLPKKKEQD Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:30:41 2011 Seq name: gi|311092080|gb|AEKJ01000013.1| Lactobacillus iners LEAF 2062A-h1 contig00006, whole genome shotgun sequence Length of sequence - 125951 bp Number of predicted genes - 140, with homology - 136 Number of transcription units - 47, operones - 25 average op.length - 4.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 24 - 914 1033 ## COG2017 Galactose mutarotase and related enzymes 2 1 Op 2 24/0.000 - CDS 931 - 2328 1226 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 3 1 Op 3 4/0.000 - CDS 2339 - 2863 787 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 4 1 Op 4 5/0.000 - CDS 2867 - 3703 815 ## COG4974 Site-specific recombinase XerD - Prom 3732 - 3791 5.3 5 1 Op 5 6/0.000 - CDS 3793 - 5106 1311 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation 6 1 Op 6 13/0.000 - CDS 5156 - 7243 1951 ## COG0550 Topoisomerase IA 7 1 Op 7 2/0.125 - CDS 7313 - 8158 752 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 8 1 Op 8 8/0.000 - CDS 8207 - 8959 731 ## COG0164 Ribonuclease HII 9 1 Op 9 . - CDS 8956 - 9795 962 ## COG1161 Predicted GTPases - Prom 9841 - 9900 13.4 10 2 Op 1 1/0.125 - CDS 10009 - 11391 1255 ## COG0793 Periplasmic protease 11 2 Op 2 . - CDS 11396 - 11590 225 ## COG4479 Uncharacterized protein conserved in bacteria 12 2 Op 3 . - CDS 11632 - 12483 832 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 12532 - 12591 12.2 + Prom 12419 - 12478 8.3 13 3 Tu 1 . + CDS 12610 - 13275 658 ## COG1272 Predicted membrane protein, hemolysin III homolog 14 4 Tu 1 . - CDS 13373 - 14749 1551 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - Prom 14931 - 14990 5.6 + Prom 14469 - 14528 6.8 15 5 Tu 1 . + CDS 14673 - 15614 735 ## COG1284 Uncharacterized conserved protein + Term 15623 - 15669 0.6 - Term 15611 - 15657 8.6 16 6 Op 1 . - CDS 15694 - 19113 2706 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 17 6 Op 2 . - CDS 19117 - 20253 858 ## Pedsa_1278 hypothetical protein 18 6 Op 3 . - CDS 20240 - 21847 1317 ## COG0286 Type I restriction-modification system methyltransferase subunit 19 6 Op 4 . - CDS 21893 - 23143 1185 ## COG0457 FOG: TPR repeat - Prom 23166 - 23225 4.1 - Term 23168 - 23214 5.5 20 7 Op 1 3/0.000 - CDS 23233 - 23508 450 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 23581 - 23640 3.8 - Term 23584 - 23639 -0.8 21 7 Op 2 3/0.000 - CDS 23654 - 24961 1628 ## COG1160 Predicted GTPases - Term 24977 - 25008 -0.6 22 7 Op 3 21/0.000 - CDS 25030 - 26217 1710 ## PROTEIN SUPPORTED gi|227520801|ref|ZP_03950850.1| 30S ribosomal protein S1 23 7 Op 4 . - CDS 26280 - 26942 764 ## COG0283 Cytidylate kinase - Prom 26967 - 27026 5.2 24 7 Op 5 . - CDS 27030 - 27623 408 ## COG3601 Predicted membrane protein - Prom 27821 - 27880 8.7 - Term 27850 - 27890 7.5 25 8 Op 1 . - CDS 27893 - 28675 809 ## gi|312872276|ref|ZP_07732346.1| hypothetical protein HMPREF9218_0041 26 8 Op 2 12/0.000 - CDS 28742 - 29461 795 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 27 8 Op 3 21/0.000 - CDS 29480 - 30046 618 ## COG1386 Predicted transcriptional regulator containing the HTH domain 28 8 Op 4 . - CDS 30048 - 30779 764 ## COG1354 Uncharacterized conserved protein 29 8 Op 5 . - CDS 30776 - 31177 402 ## LGAS_0885 riboflavin biosynthesis acetyltransferase RibT 30 8 Op 6 . - CDS 31146 - 32036 1137 ## COG4974 Site-specific recombinase XerD 31 8 Op 7 . - CDS 32029 - 32910 456 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains - Prom 32940 - 32999 8.8 - Term 32959 - 33007 6.1 32 9 Op 1 12/0.000 - CDS 33025 - 34794 2645 ## COG0469 Pyruvate kinase 33 9 Op 2 3/0.000 - CDS 34832 - 35791 1253 ## COG0205 6-phosphofructokinase - Prom 35859 - 35918 5.4 34 9 Op 3 . - CDS 35930 - 39052 2601 ## COG0587 DNA polymerase III, alpha subunit - Prom 39085 - 39144 8.9 + Prom 39055 - 39114 9.0 35 10 Tu 1 . + CDS 39139 - 39462 329 ## LGAS_0879 hypothetical protein + Term 39484 - 39519 -0.6 - Term 39528 - 39558 2.0 36 11 Tu 1 . - CDS 39567 - 39758 289 ## PROTEIN SUPPORTED gi|42519001|ref|NP_964931.1| 50S ribosomal protein L32 - Prom 39794 - 39853 6.2 - Term 39830 - 39870 2.5 37 12 Op 1 4/0.000 - CDS 39882 - 40676 169 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 38 12 Op 2 . - CDS 40681 - 41607 891 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 39 12 Op 3 . - CDS 41614 - 43536 1185 ## COG1835 Predicted acyltransferases 40 12 Op 4 . - CDS 43553 - 44836 1607 ## COG0536 Predicted GTPase - Prom 44863 - 44922 1.7 41 12 Op 5 . - CDS 44924 - 46741 1468 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 46800 - 46859 6.5 + Prom 46784 - 46843 13.0 42 13 Op 1 . + CDS 46868 - 47797 927 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 43 13 Op 2 . + CDS 47809 - 47925 129 ## + Term 47941 - 47996 4.4 - Term 47927 - 47981 5.4 44 14 Op 1 . - CDS 47985 - 48362 478 ## LJ1063 hypothetical protein 45 14 Op 2 . - CDS 48399 - 48713 459 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 46 14 Op 3 9/0.000 - CDS 48715 - 49596 1305 ## COG1760 L-serine deaminase 47 14 Op 4 . - CDS 49617 - 50279 734 ## COG1760 L-serine deaminase - Prom 50299 - 50358 4.1 48 15 Op 1 . - CDS 50360 - 50878 378 ## LBA0863 hypothetical protein 49 15 Op 2 4/0.000 - CDS 50950 - 51537 690 ## COG0218 Predicted GTPase 50 15 Op 3 4/0.000 - CDS 51527 - 52816 276 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 - Prom 52853 - 52912 6.7 - Term 52873 - 52906 2.2 51 15 Op 4 . - CDS 52924 - 54252 1992 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 54295 - 54354 14.5 - Term 54327 - 54375 9.5 52 16 Tu 1 . - CDS 54378 - 55568 1374 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 55629 - 55688 6.7 53 17 Op 1 . - CDS 55738 - 56607 851 ## FI9785_1198 hypothetical protein 54 17 Op 2 2/0.125 - CDS 56576 - 58462 1895 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily - Prom 58526 - 58585 7.8 - Term 58588 - 58632 4.3 55 18 Tu 1 . - CDS 58649 - 58918 412 ## PROTEIN SUPPORTED gi|42518932|ref|NP_964862.1| 30S ribosomal protein S15P/S13E - Prom 58998 - 59057 6.6 + Prom 58869 - 58928 9.2 56 19 Tu 1 . + CDS 59102 - 59365 307 ## PROTEIN SUPPORTED gi|116629807|ref|YP_814979.1| 30S ribosomal protein S20 + Term 59372 - 59432 7.1 - Term 59309 - 59346 1.0 57 20 Op 1 4/0.000 - CDS 59402 - 60400 1115 ## COG1466 DNA polymerase III, delta subunit 58 20 Op 2 4/0.000 - CDS 60397 - 62676 1122 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 59 20 Op 3 . - CDS 62645 - 63166 639 ## COG1555 DNA uptake protein and related DNA-binding proteins - Prom 63254 - 63313 5.1 - Term 63261 - 63315 -0.5 60 21 Op 1 4/0.000 - CDS 63320 - 64351 319 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 61 21 Op 2 14/0.000 - CDS 64353 - 64850 295 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 62 21 Op 3 . - CDS 64837 - 65391 383 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 63 21 Op 4 . - CDS 65388 - 65720 276 ## FI9785_1208 hypothetical protein 64 21 Op 5 . - CDS 65698 - 66900 1164 ## COG0772 Bacterial cell division membrane protein - Prom 66953 - 67012 6.6 - Term 66977 - 67020 3.4 65 22 Tu 1 . - CDS 67044 - 68942 2454 ## COG1217 Predicted membrane GTPase involved in stress response + Prom 69027 - 69086 12.5 66 23 Tu 1 . + CDS 69138 - 69683 573 ## COG0242 N-formylmethionyl-tRNA deformylase + Term 69685 - 69723 8.6 + Prom 69703 - 69762 6.8 67 24 Op 1 7/0.000 + CDS 69820 - 70044 293 ## COG5503 Uncharacterized conserved small protein 68 24 Op 2 . + CDS 70155 - 71732 1428 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Term 71733 - 71785 9.4 - Term 71726 - 71765 2.1 69 25 Op 1 . - CDS 71771 - 74113 2224 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 70 25 Op 2 . - CDS 74141 - 74773 590 ## LGAS_1187 TPR repeat-containing protein 71 25 Op 3 . - CDS 74773 - 75429 682 ## COG0406 Fructose-2,6-bisphosphatase 72 25 Op 4 . - CDS 75458 - 76585 1175 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 73 25 Op 5 . - CDS 76596 - 76931 245 ## LGAS_1190 hypothetical protein 74 25 Op 6 16/0.000 - CDS 76962 - 77339 474 ## COG0262 Dihydrofolate reductase - Prom 77415 - 77474 4.3 75 25 Op 7 . - CDS 77484 - 78473 1035 ## COG0207 Thymidylate synthase 76 25 Op 8 7/0.000 - CDS 78504 - 79031 676 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 79057 - 79116 6.6 77 25 Op 9 . - CDS 79128 - 81413 1985 ## COG0608 Single-stranded DNA-specific exonuclease 78 25 Op 10 . - CDS 81410 - 82096 744 ## COG3764 Sortase (surface protein transpeptidase) 79 25 Op 11 . - CDS 82098 - 83936 1889 ## COG0481 Membrane GTPase LepA - Prom 83968 - 84027 13.5 - Term 84124 - 84167 8.9 80 26 Op 1 . - CDS 84169 - 84399 124 ## gi|312872354|ref|ZP_07732424.1| conserved hypothetical protein 81 26 Op 2 . - CDS 84351 - 85070 844 ## gi|312872376|ref|ZP_07732446.1| hypothetical protein HMPREF9218_0097 - Prom 85174 - 85233 7.0 - Term 85280 - 85325 9.8 82 27 Op 1 . - CDS 85359 - 86462 1291 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 83 27 Op 2 . - CDS 86472 - 86894 518 ## gi|312872392|ref|ZP_07732462.1| hypothetical protein HMPREF9218_0099 84 27 Op 3 . - CDS 86909 - 87217 364 ## ELI_1319 hypothetical protein 85 27 Op 4 . - CDS 87214 - 87369 192 ## gi|309805038|ref|ZP_07699095.1| XkdX family protein 86 27 Op 5 . - CDS 87344 - 87679 376 ## gi|312872378|ref|ZP_07732448.1| conserved hypothetical protein 87 27 Op 6 . - CDS 87700 - 88011 198 ## gi|312872295|ref|ZP_07732365.1| hypothetical protein HMPREF9218_0103 88 27 Op 7 . - CDS 88022 - 90025 1197 ## gi|312872364|ref|ZP_07732434.1| hypothetical protein HMPREF9218_0104 89 27 Op 8 . - CDS 90006 - 90230 291 ## gi|312872303|ref|ZP_07732373.1| hypothetical protein HMPREF9218_0105 90 27 Op 9 . - CDS 90233 - 92254 2232 ## COG4926 Phage-related protein 91 27 Op 10 . - CDS 92251 - 92979 340 ## gi|312872337|ref|ZP_07732407.1| putative phage tail component, N-terminal domain protein 92 27 Op 11 . - CDS 92976 - 94868 2055 ## COG5412 Phage-related protein - Prom 94962 - 95021 4.2 - Term 95030 - 95073 6.3 93 28 Op 1 . - CDS 95308 - 95838 579 ## COG5412 Phage-related protein 94 28 Op 2 . - CDS 95831 - 96208 293 ## SP670_0088 phage protein 95 28 Op 3 . - CDS 96220 - 96507 317 ## gi|312872387|ref|ZP_07732457.1| conserved hypothetical protein 96 28 Op 4 . - CDS 96500 - 97114 881 ## MGAS10750_Spy1291 major tail protein 97 28 Op 5 . - CDS 97130 - 97459 411 ## gi|312872282|ref|ZP_07732352.1| conserved hypothetical protein 98 28 Op 6 . - CDS 97452 - 97703 416 ## gi|312872267|ref|ZP_07732337.1| conserved hypothetical protein 99 28 Op 7 . - CDS 97700 - 98032 519 ## LLKF_1074 phage protein 100 28 Op 8 . - CDS 98051 - 98449 592 ## LLKF_1073 phage protein 101 28 Op 9 . - CDS 98472 - 98615 195 ## gi|312872358|ref|ZP_07732428.1| hypothetical protein HMPREF9218_0117 102 28 Op 10 . - CDS 98627 - 99529 1247 ## SAG0587 prophage LambdaSa1, structural protein, putative 103 28 Op 11 . - CDS 99548 - 100000 693 ## gi|312872360|ref|ZP_07732430.1| conserved hypothetical protein - Prom 100078 - 100137 2.8 - Term 100104 - 100146 1.7 104 29 Tu 1 . - CDS 100148 - 101533 1732 ## LLKF_1069 phage terminase - Prom 101623 - 101682 9.0 - Term 101549 - 101580 0.2 105 30 Tu 1 . - CDS 101695 - 101838 98 ## gi|259501592|ref|ZP_05744494.1| biotin-acetyl-CoA-carboxylase ligase - Prom 101985 - 102044 3.1 + Prom 101778 - 101837 6.7 106 31 Tu 1 . + CDS 101912 - 102082 270 ## gi|312872338|ref|ZP_07732408.1| conserved hypothetical protein + Term 102172 - 102231 7.8 107 32 Tu 1 . - CDS 102066 - 102371 339 ## LMHCC_2978 phage protein - Prom 102477 - 102536 4.5 - Term 102398 - 102431 0.2 108 33 Op 1 . - CDS 102574 - 102774 362 ## smi_0097 hypothetical protein 109 33 Op 2 . - CDS 102743 - 103894 1191 ## SAG0583 hypothetical protein 110 33 Op 3 . - CDS 103803 - 105116 1214 ## SP70585_0057 hypothetical protein - Prom 105139 - 105198 2.4 - Term 105178 - 105213 3.1 111 34 Tu 1 . - CDS 105228 - 105548 366 ## COG1403 Restriction endonuclease - Prom 105673 - 105732 6.1 112 35 Op 1 4/0.000 - CDS 105868 - 106857 901 ## COG0286 Type I restriction-modification system methyltransferase subunit 113 35 Op 2 . - CDS 106838 - 107347 563 ## COG0286 Type I restriction-modification system methyltransferase subunit - Prom 107368 - 107427 3.9 - Term 107831 - 107877 0.3 114 36 Op 1 . - CDS 107884 - 108366 319 ## LGAS_0597 phage related protein 115 36 Op 2 . - CDS 108388 - 108606 131 ## gi|309804996|ref|ZP_07699053.1| hypothetical protein HMPREF9213_0841 116 36 Op 3 . - CDS 108588 - 109046 411 ## COG4570 Holliday junction resolvase 117 36 Op 4 . - CDS 109043 - 109750 389 ## gi|312872302|ref|ZP_07732372.1| hypothetical protein HMPREF9218_0132 118 36 Op 5 . - CDS 109737 - 110285 457 ## gi|312872277|ref|ZP_07732347.1| hypothetical protein HMPREF9218_0133 - Prom 110333 - 110392 4.5 119 37 Op 1 . - CDS 110421 - 111338 725 ## Clole_1831 hypothetical protein 120 37 Op 2 . - CDS 111350 - 112123 988 ## LJ1449 Lj928 prophage protein 121 37 Op 3 . - CDS 112126 - 113007 847 ## LJ1450 Lj928 prophage replication protein 122 37 Op 4 . - CDS 112994 - 113374 379 ## gi|312872386|ref|ZP_07732456.1| hypothetical protein HMPREF9218_0137 - Prom 113399 - 113458 4.5 123 37 Op 5 . - CDS 113460 - 113654 126 ## gi|312872349|ref|ZP_07732419.1| DNA-binding helix-turn-helix protein - Prom 113899 - 113958 5.1 124 38 Tu 1 . + CDS 113854 - 114027 56 ## - Term 113926 - 113969 -0.7 125 39 Op 1 . - CDS 114186 - 114341 177 ## gi|325912787|ref|ZP_08175166.1| hypothetical protein HMPREF0523_0434 126 39 Op 2 . - CDS 114354 - 114569 302 ## FI9785_807 hypothetical protein 127 39 Op 3 . - CDS 114575 - 115339 949 ## COG3617 Prophage antirepressor 128 39 Op 4 . - CDS 115336 - 115725 212 ## gi|309806823|ref|ZP_07700812.1| BRO family, N-terminal domain protein 129 40 Tu 1 . + CDS 115698 - 115907 75 ## 130 41 Tu 1 . - CDS 115859 - 116077 250 ## LM5578_p11 phage transcriptional regulator, Cro/CI family - Prom 116191 - 116250 7.7 131 42 Op 1 . + CDS 116522 - 117241 696 ## COG1396 Predicted transcriptional regulators 132 42 Op 2 . + CDS 117305 - 117805 697 ## SERP0074 hypothetical protein 133 43 Tu 1 . + CDS 117950 - 119068 866 ## COG0582 Integrase - Term 119166 - 119214 10.2 134 44 Op 1 31/0.000 - CDS 119257 - 120387 1562 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Term 120400 - 120441 6.6 135 44 Op 2 29/0.000 - CDS 120456 - 122297 2307 ## COG0443 Molecular chaperone 136 44 Op 3 21/0.000 - CDS 122314 - 122862 549 ## COG0576 Molecular chaperone GrpE (heat shock protein) 137 44 Op 4 . - CDS 122874 - 123932 1221 ## COG1420 Transcriptional regulator of heat shock gene - Prom 123988 - 124047 7.8 - Term 124108 - 124160 3.2 138 45 Tu 1 . - CDS 124191 - 124934 564 ## gi|309803949|ref|ZP_07698032.1| hypothetical protein HMPREF9214_0705 - Prom 124962 - 125021 11.7 - Term 125128 - 125161 -0.9 139 46 Tu 1 . - CDS 125270 - 125440 187 ## 140 47 Tu 1 . - CDS 125524 - 125883 282 ## gi|309803963|ref|ZP_07698046.1| hypothetical protein HMPREF9214_0703 Predicted protein(s) >gi|311092080|gb|AEKJ01000013.1| GENE 1 24 - 914 1033 296 aa, chain - ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 1 289 1 294 298 185 34.0 1e-46 MEYQLKNSFLTLTVSTLGAEIQSVVDNNSKCEYIWTAKKEVWPQHAPVLFPIVGRLKNDQ YTYKNKTYHLGQHGFAHKKEFELDQQDDTSITLLLKSDEETKKQYPFDFEFRVKYSLVNN LIKEDFIVTNTGSEEMIFGVGGHPGFNLPTNQGLKKEDYYFKFDPSIDHVRIPLEAPLLD WENRSLVSTNSLFEINDQLFEKDAWIFQLDNHPTKVSIKTDKSNYHINVHIDNAPYVGLW SQYPVTADYICIEPWWGIADTKDTNGKLEDKIGMNRVAAGQTWSNGFSMAFHDETK >gi|311092080|gb|AEKJ01000013.1| GENE 2 931 - 2328 1226 465 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 4 465 9 466 466 476 54 1e-133 MVKTPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGV GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKI EATEHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDDEDDEELDDQIIDKR ASVADKLKKGLLENHEVTLYVESATKANQMNDMIGQMGMDMSSLMGGLMPKKRVRRTLSV KDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREGVQ RDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLRES DFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRLATI LEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL >gi|311092080|gb|AEKJ01000013.1| GENE 3 2339 - 2863 787 174 aa, chain - ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 2 174 6 179 179 184 57.0 5e-47 MTTICAVRHKGKIAIAGDGQVTLGEKVIAKSTAKKVRRIYHNQVVVGFAGGVADAVSLQD MLEGKLETYSGDLRRSTVEMAQGWRKDPTLAKLQAMMIAFNDKDLLLISGNGEVLEPDED VVAIGSGGNYAQAAALAMIRHSSDMDACDIAKEAVLIAAGIDVFTDDKITSDEI >gi|311092080|gb|AEKJ01000013.1| GENE 4 2867 - 3703 815 278 aa, chain - ## HITS:1 COG:BS_codV KEGG:ns NR:ns ## COG: BS_codV COG4974 # Protein_GI_number: 16078677 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 1 275 30 304 304 224 43.0 1e-58 MDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYLAQKKYKRSTQSRKISTLRSFYRFLN KRNIIPVNPVELISLRGDHKNLPEFLYSDEMVKVLKSISTTTPLGLRNMALLELFYATGM RVSEIANLKLDQVDFELNLILVHGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDY GYVFLNSNGNMITSRGLEYIIKNIFLNAGISASVHPHMLRHTFATQMLNNGADLRTVQEL LGHESISTTQIYTHVTKQHLCDIYHKYFPRDNKENEAK >gi|311092080|gb|AEKJ01000013.1| GENE 5 3793 - 5106 1311 437 aa, chain - ## HITS:1 COG:lin1315 KEGG:ns NR:ns ## COG: lin1315 COG1206 # Protein_GI_number: 16800383 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Listeria innocua # 1 435 1 434 434 567 65.0 1e-161 MPERVTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQ LSNAVGLLKEEMRQLDSLIMRVADETAVPAGGALAVDRDSFSKKVTQIINELPNVHVHNE EIKDIPKDGINIIATGPLTSDSLATKIKEFCGSESLHFFDAAAPIITAESIDYNIVYKKS RYDKGEAAYLNCPMDKEQFVNFYNNLITAETAELHEFEKNNVFEGCMPIEVMAKRGEKTM LFGPLKPVGLEDPKTGKLPYAVVQLRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLA NAVFVRYGKMHRNTYISSPEVLNSTYETKLCENLFFAGQMTGVEGYVESAGSGLVAGINA SLRAIGESPIVFPKNTAIGSMANYITSTSAKNFQPMNASYSLMPQLEKKIRNKQERHLMQ SKIALDELNEFKNKVGL >gi|311092080|gb|AEKJ01000013.1| GENE 6 5156 - 7243 1951 695 aa, chain - ## HITS:1 COG:SPy1164_1 KEGG:ns NR:ns ## COG: SPy1164_1 COG0550 # Protein_GI_number: 15675140 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Streptococcus pyogenes M1 GAS # 9 575 27 589 589 703 63.0 0 MPTAKVKKNLVIVESPHKAKTIEKYLGRNYHVIASKGHVRDLPKSQMGVDIDNDYEPKYI SIRGKGSTIKELKAEAKKAKNVYLASDPDREGEAIAWHISHILGLDPKDMNRVAFNEITK DAVKAAFKEPRAIDMNIVDAQQARRVLDRLVGYSISPILWAKVKKGLSAGRVQSIALKLV IDREKEILNFVPQEYWTISSTFKKNEQKSTFNGDFYGLAGKKIDLTNNDDVRKILAKIDK KQPFEVTQVIKKERKRQAAAPFTTSTMQQEANKRLGYRTHRTMRIAQSLYEGINLGKGSV GLITYMRTDSKRIANVAKQEAADFIKSEFGDAFAAHNPKNFKNDGDAQDAHEAIRPTSAF RTPESIKDYLTPEEYRLYNLIWSRFIASQMNAAIYDTVRADIVQNDVTFRTTGSKLKFAG FTKVYDSNSEKNKDLPELVEGELVDLVKMSTDQHFTQPPARYTEASLVHTLEENGVGRPS TYAPTIDTIQKRYYVKLEGRSIVPTELGEIVNKLIEKFFPDIVNVDFTAQLENDLDSVEV GKKDWVKIVDAYYQPFSKELAKADDQIEKIQIKDEDAKFDCEICGAPMVIKLGRYGKFYA CSRFPDCRNTQAITKKVGVICPKCGKGDIIEKKSKKNRKFYGCSNYPDCDFVSWDQPIAR TCPNDGHFLVQKKTKKGLLVLCPNGDYREDQEESN >gi|311092080|gb|AEKJ01000013.1| GENE 7 7313 - 8158 752 281 aa, chain - ## HITS:1 COG:BH2468 KEGG:ns NR:ns ## COG: BH2468 COG0758 # Protein_GI_number: 15615031 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Bacillus halodurans # 75 269 81 276 302 189 48.0 7e-48 MNIKELCLRLKLQKKIGYKNMYKILFQLSSEKEITYQLINELNIDFELRGLVLSAFDNEN YSKLIDKICSQCDVITIFDDIYPECLKEIYNPPLVLFARGNLDLLQRRITVIVGSRTPTK YSEQVLQRLIPNIIQDGWVIASGLAKGVDELAHRLTLANHGDTIAVIGNGLNYFYPHQNE GLQQEIFRKGLVLSEYLPDTPPLPFRFPERNRILAGLSENILVTEARKKSGSLITANLGL EANRNIFAVPGPINSNLSEGPNELIAAGAVPVIDYFLDDTI >gi|311092080|gb|AEKJ01000013.1| GENE 8 8207 - 8959 731 250 aa, chain - ## HITS:1 COG:SP1156 KEGG:ns NR:ns ## COG: SP1156 COG0164 # Protein_GI_number: 15901021 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Streptococcus pneumoniae TIGR4 # 2 248 3 251 259 228 49.0 1e-59 MTIDEIKTLLSSGDVSTDLLIKLENDSRKGVQRLVKSYKMQKAKKEKAFLEFETRFSYEK EFWCQKKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNELFPMILD KAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDLPQLKLIR GDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALKQYGPTPIHR FSFEPVSSYR >gi|311092080|gb|AEKJ01000013.1| GENE 9 8956 - 9795 962 279 aa, chain - ## HITS:1 COG:SPy1161 KEGG:ns NR:ns ## COG: SPy1161 COG1161 # Protein_GI_number: 15675137 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 1 277 1 274 282 258 43.0 7e-69 MANIQWYPGHMNKAKNQLEDKLDLIDVIIEVLDARLPMSSKNPMISKLIANKAHIIILNK ADLADAIKTKAWVKFFQKQGILVLPMDAQHSNNMSGLIKLIKIATKDKVDKIIAKGAKEP VIKVAIAGIPNCGKSTIINRLVGRNATIVGDKPGVTRGQNWLKTDTNIQILDTPGILWPK FDDRNIGLKLAACGAIKDSVFHADDVSIFVLKYLREQYLNLLVDFCKTSAEKIEKINDID LLLAMTQLFGMRDDYERFSIFFLQRLRKGKIGRITFDLP >gi|311092080|gb|AEKJ01000013.1| GENE 10 10009 - 11391 1255 460 aa, chain - ## HITS:1 COG:lin1965 KEGG:ns NR:ns ## COG: lin1965 COG0793 # Protein_GI_number: 16801031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Listeria innocua # 8 429 39 465 496 234 34.0 2e-61 MKKKLSEYKYLFIVGLIGIFLGCISTYSAMTIYQQKSPLGKINNFYQKLKKTYYYDISDK RLISGAIDGMLNSLSDPYSQKLEGNHLKQINGVLTGNSFGGIGVEMQVFHNKIVICSVLR DTPAFKAHIKVNDELIGVNGKSVDARNFMELSKMIRGKIGTKVTLTLIRNNKKIDVTVVR ANIKQSTVSVRQKGSATIIAISQFDVNTAKDLREALKNAKVLHSKKLIIDLRNNPGGIME QAMTCAAYFVPYGKIIMKYEGRNEHQIIRSNKKLSNNFRTKLKPIIIINQHTASASEIFT AALVDNQCAVTVGQHSFGKGTVQQVGVDDNVEYKFTIAKWLTPRGKWINKRGIKPTYETP VSAIENLPKFQTNTLLKYNMMGLDIAILQKYLMALGYLSNNLTGVYDNATLNSVKMFEKD NNLKVTGIVNKDIRYALYVAAYNKFYNDDVTVSKALSIDF >gi|311092080|gb|AEKJ01000013.1| GENE 11 11396 - 11590 225 64 aa, chain - ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 59 10 68 77 57 52.0 8e-09 MTLRDHNSTDEVVQFANNAEFDSSFPRQEQDYEKLSEYLEFNATYLVSMTIFDRAYQMYQ EKMM >gi|311092080|gb|AEKJ01000013.1| GENE 12 11632 - 12483 832 283 aa, chain - ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 279 1 274 279 188 39.0 1e-47 MKKIKIVTDSSAQLTIDEINKYDIHIVPLSITFSDKTYTDGVDISREDFVKKMLSADELP KTSQPSIGLFEDVFKDLASDGSHILGIFLTQSLSGTISAAKQAADLLNLGDNITIIDSGL TDRALGLQVLAAAKDLISGKTLQEITLHIEAIKKNQHLEMMVSNLDNLIKGGRLGSISGK IATLLNIKLVLQMTDGKLSVYKKGRGKKFFKDFEERVLADIEANKNQISEVGISYVDTPD IAAEIADRIHLINSDINVLSNITSPIISSHAGSGAIAIIYYTE >gi|311092080|gb|AEKJ01000013.1| GENE 13 12610 - 13275 658 221 aa, chain + ## HITS:1 COG:L97827 KEGG:ns NR:ns ## COG: L97827 COG1272 # Protein_GI_number: 15672479 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Lactococcus lactis # 14 221 7 216 217 164 47.0 1e-40 MTFKKLWEEPKNVSTKYFILNNIFSAITHCIGFGLAIAGLVILIIRSASTGNAIRVVSFT IFGTSLVILYLFSTLYHSLVFTKAKRIFQIFDHSSIFILIAGSYTPYALVMIGGFKGWLL FGIIYTLAVIGILFCIFNKGKRPLGEIILYIAMGWTALTFGNTIFPLLGKSGFLLLLSGG LAYTIGALLYTMKRIPYIHVIWHLFVILGSALIYFSILLYV >gi|311092080|gb|AEKJ01000013.1| GENE 14 13373 - 14749 1551 458 aa, chain - ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 67 458 1 393 394 315 43.0 2e-85 MVLVFKIDLIMDFEKFVFELFCKKFMNIYHFLSKTNSYYLILPNLALNLVKFNSEYERKS IMNITELPNVFKAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQ IFEKTIDTGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFT INALAMDAEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGFELDL DTKKAIFDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQL SVFSKLNFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLLSY RIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNYLLKK GIPAGPRIGELLVEIKKAILERKLENNISAIDVFLNNK >gi|311092080|gb|AEKJ01000013.1| GENE 15 14673 - 15614 735 313 aa, chain + ## HITS:1 COG:lin2023 KEGG:ns NR:ns ## COG: lin2023 COG1284 # Protein_GI_number: 16801089 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 20 309 1 288 288 241 46.0 1e-63 MNFLQNNSKTNFSKSIIKSILNTKTIKDLFFIALGASIYAFSLDAINIKNQLADGGISGV TLLLRYWFKINPGISTLVLNIPLIIIGYKYMGRRMLILTIWGTSCLSFFLNFWLHTPFIH QINLDHDLFLAGLLTGLLSGLGIGIVFKFGGTTGGTDIIARILELKLGIPIGKTLLGLDV LVLGISLSYLDTKHMLYTLVGSYFLAKIADYVQEGSYAAKGVIIISDKYLNIAKMINLNL DRGYTYLLAEGGYQNDTKKIIYCVVSPRELSNLKSIVLNEDKKAFVSIIDVHETLGEGFT YLRKKNNIFQQFK >gi|311092080|gb|AEKJ01000013.1| GENE 16 15694 - 19113 2706 1139 aa, chain - ## HITS:1 COG:XF2739 KEGG:ns NR:ns ## COG: XF2739 COG0610 # Protein_GI_number: 15839328 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 11 1109 20 1058 1058 385 28.0 1e-106 MAKEYNGHYCESEYEYAFIGFLEAEGWNYIAGNNINRNDKREVLIADDFKKFIAKTNPEL TEDEVTQIFDTVRLVGAESDFATLHKVYGWMVDGIQFTPQNGLAKMVALIDFENPDKNIF RVVNQFTVEYTNNGQKENRRPDVLLFVNGMPLCVIELKNPADSRATVYDAWKQITIRYWR DIPHLLHYCPLACISDGVKTRLGTVRTPYEHFYSWRRVNDDDKVSTLPFAETETMVKGVY SPVRFLEIFRDYIYFQDSDYDSAEVEIVCRYPQFFAAKLLKQSIVNSIVTRNGKGGTYFG ATGCGKTYTMAFLARQLALRCSDIPQVGSPTIILIVDREELQKQGAKLFTKSKEFLNLGE VSVVQSRAQLRQELGARQSGGFYICTIQKFCDREDDKIGLINDRQNIICFSDEAHRTQLE HSKKIQFSKDADENMKAMLSKPYAKVLKEAFPHATFVGFTGTPIAETYQTFGDEIDRYTM DQAVADGITVSIKYHPRIAKVLLDKNKVKEIEDYYKKCADDGATYDDIETSKRAMSSMEV ILAEPSRLERLATDIHDHYISSCDSDPDRIQKAMIVCSSRKIAYSLLLKFKDKYPEWFKE KKTPDGVVATDEELKELKPMPFMAMVSSVGSNDETEMYNYLGGVKNDKRSEDLDAAFKQD KSNFHIVIVVDMWITGFDVPSLTYLYNDKPLKKHLLIQTISRVNRKYPGKDYGMVIDYIG IRDNMREAMKIYGGDISVAPTSDDVEQATSVFREELEILKTLFTDYDLAPFLNPECDPVE RYKLLSQAAEYVFKSIQTLQTEENGKINQVSFRTYFLNNVKRMRSAFDICQPSGNLGKEE SALAQCFMAIAGFVRKMSGTSDVDADTMNRAVSKMVEEALKYNKVENVLESGEEEDIFSP EYFEKLSNVKMPATKLELLIKMLRKQIQEYGKVNQLAAKTFQEMLEKTIDEYHERRKHLT DEEIGVTQEVASENIIKAATEQALVILRWMNENRESFRKIGLTFEEKAFYDILIALRDQY KFEYGTDKEVNGVVVNDKCKSLAKKVKEIIDTESSFVDWLNNQNVRDQLKLKIKICLVKN DYPPQYSPEVFTKVMEQVENFEEYSETTPESKVVPFNYSATTQRPMMVAEDSAPHENKE >gi|311092080|gb|AEKJ01000013.1| GENE 17 19117 - 20253 858 378 aa, chain - ## HITS:1 COG:no KEGG:Pedsa_1278 NR:ns ## KEGG: Pedsa_1278 # Name: not_defined # Def: hypothetical protein # Organism: P.saltans # Pathway: not_defined # 194 366 4 179 397 125 38.0 4e-27 MGLIKYKLGELIELLGNTNNDLQYGIEDVRGVNNLKKMMSTKADLNGRNLGKFQIVYPGE FFFNHRTSRNGSKFSITYNYESNPIICTEDYVVFRLKKICENILLKEWLYMYFNRSEFDR FVITNSWGSSTEFYNWSDVCDIELHLPPLAIQQKYVNVYNAMVANQKAYERGLEDLKLTC DAYIEDLRRKYELQEIGSYIERIDERNKDNQLTNVKGLTVYKHFIDTKANLTNVSITNYK IVRVGDIGYVPTTNRNGDRLACGLCNEDCLISSIYEVIRPDNSKLRSDYLFLWFRRSEFD RYVRYCSWGSARETFDFRDMEEFSIPIPPLEIQNSIADIYKVYTERKDINEKLKAQIKAI CPILIKGSIEDGSNSKEA >gi|311092080|gb|AEKJ01000013.1| GENE 18 20240 - 21847 1317 535 aa, chain - ## HITS:1 COG:Cj1553c KEGG:ns NR:ns ## COG: Cj1553c COG0286 # Protein_GI_number: 15792861 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Campylobacter jejuni # 1 523 1 492 500 334 38.0 2e-91 MAKKKTAEKTLNIDSILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIEAL RKTLIEQGLDPDDANIKAAFFDDATFTDGTYSLPVEARWSTIINTPAPKLNVALDTALSK LEAEDPQLKGCFIKGTFTTRNLAANDIKKIVDEVNKISHKAFGKEKDLIGYVYEYFLKEF AVNATKEEGEFYTPHDVVKLIAAMIEPFEGTLYDPACGSGGMFIQSAELVKSKQGNLNSI NVYGQEKEAATYRLAKMNLALRGISHNLGGTNDSSFTHDLHKGLYFDYVMANPPFNLKGW YDENLKNDARWADYGTPPESNANYAWILHILSHLKPSNGVAGFLLANGALNDSDTLEIRK KLIQNDKVEAIIVLPRELFITTDISVTLWILNQNKKGGKYHGRNLRNREHEILFMDLRTW TENAVKGENKKKVRLSADQIQRAANIYHTWQSEGTDGNNYAVPELYRSVGMVEIESKGWA LTPSKYIEFIDHDLDIDYEKEMARIQAEMKDLLREEKESQKMLEDAFRGIGYGID >gi|311092080|gb|AEKJ01000013.1| GENE 19 21893 - 23143 1185 416 aa, chain - ## HITS:1 COG:lin2036 KEGG:ns NR:ns ## COG: lin2036 COG0457 # Protein_GI_number: 16801102 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Listeria innocua # 1 414 1 417 417 184 28.0 2e-46 MSYSEKLLDEIQKHNFSNNNILLKKALQNDDNNVLIDLAENLLGFGFTDLAKTVYMHLIK TFPDEGVFKVYLAEILLNDGDEDQGLQLLYDIKPSSSGYIESLLAQADYYQTNGCFDVAE NKLKQALSLRKDEPAIIFGCAEINYLKGSYDSAMQYYQELLDQGNKTFGEVAISQRIMSC LAKMGKYEEAAEVIQNNMDSLLNIDSQYDAGLIMMATSNWKQAIKLFQAVIDSQPDYVNV YPNLAKAYFNIGELNKALVVANAGISYNEYDISLYRIGSKAALSLKDYDQAQQILEKGVD ILPNNDDLKLDLSNLYIITNQDKNNILLLSHDNDNQHDPQLIWNLAISYQRTENYQKAKE QFLLAYPNFKNNADFLRQMALFFHEIGDTHDFKLVLKKYIEMVPEDIEMQDLMNEK >gi|311092080|gb|AEKJ01000013.1| GENE 20 23233 - 23508 450 91 aa, chain - ## HITS:1 COG:SA1305 KEGG:ns NR:ns ## COG: SA1305 COG0776 # Protein_GI_number: 15927054 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Staphylococcus aureus N315 # 3 91 2 90 90 104 71.0 3e-23 MANKADLVSLVASNTKLSKKEAADAVDLVFNFVKETLSKDEKVQLIGFGTFEVRERAARK GRNPQTGAEIEIPASKVPAFKPGKALKEAVK >gi|311092080|gb|AEKJ01000013.1| GENE 21 23654 - 24961 1628 435 aa, chain - ## HITS:1 COG:lin2051 KEGG:ns NR:ns ## COG: lin2051 COG1160 # Protein_GI_number: 16801117 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 1 435 1 436 436 542 61.0 1e-154 MSLPVVALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGG ITFEDNVIEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINK ADNPEQRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKFNGNNTTDDDNNIRFSII GRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGIRRKGKVYE KVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAVNKWDVPSK TTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRRIQSSVLND LLLDATRITPTPLVNGKRLRIYYMTQVAVVPPTFVVFVNDPELLHFSYKRFLINQMRQNF NFEGTPIKILARKRK >gi|311092080|gb|AEKJ01000013.1| GENE 22 25030 - 26217 1710 395 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227520801|ref|ZP_03950850.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03] # 1 395 1 396 398 663 84 0.0 MSDNSNQFLDALKQMQGVEVGSIVEVEVLNVEDGQLTVGVVNEGVEGIIIKREFTADRNA NLQSLVKPGDKFKALVLRKAGGDKENGEFFFSVTRLKEREAYSELEKVYAEGNTVEGVVT GAVRGGLLVDVGTRGFLPASLISNRYVSDLKPYIGKKMNLKITEIDPNKNRLILSRKDLI EEEREEAFESVANQLVVGDTIEGKVSRLTGFGAFINVGGVDGLVHISEISYKHIDKPSDV LKVGQEVKVKVIGIDDDRRRISLSIKQTLPSPFEEATSELHEGDVIDGEVKSLTSFGAFI EVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSDKRISLSIKQTESDNKS NESRPRHEDNVAKKYMSDGDNGFALGDLIGDQLKD >gi|311092080|gb|AEKJ01000013.1| GENE 23 26280 - 26942 764 220 aa, chain - ## HITS:1 COG:SPy0803 KEGG:ns NR:ns ## COG: SPy0803 COG0283 # Protein_GI_number: 15674845 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Streptococcus pyogenes M1 GAS # 1 218 4 222 226 208 53.0 6e-54 MQVAIDGPASAGKSTVAKIIAKNMGYIYLDTGAMYRACTLVAKQNRLAYDDQSGILKALN NNIISFKNIDDDQRVYINDKDVSFDIRTPEITANVSQVSALSEIRKKMVEIQRKIAGENN IIMDGRDIGTTVLPNADVKIFLIASVASRAKRRYLDFKEKGINQNLTDIEKDIADRDYKD MHRQISPLRKAEDAYQVDTTDMSIDQVVNKLTQIIKKIKK >gi|311092080|gb|AEKJ01000013.1| GENE 24 27030 - 27623 408 197 aa, chain - ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 13 196 6 185 203 89 32.0 5e-18 MRRYQKVNNINELKILLLSMMLGVFSFIVMQISIPIIPGASFLKLDCSDIIIMISFFVFN PIVGSTVAIVRGILCLIIGGFNLIALLGQIAALVASLCYIFPIYCWSKNKMYMLKYKIIG ILLGTCGLTISMSIINYYVLLPLYMQLVNFKINDLMAYILFLIAPFNLIKGIINGILFLI LSNKIIPTLQKFIEKNC >gi|311092080|gb|AEKJ01000013.1| GENE 25 27893 - 28675 809 260 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872276|ref|ZP_07732346.1| ## NR: gi|312872276|ref|ZP_07732346.1| hypothetical protein HMPREF9218_0041 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0749 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9217_0749 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_0041 [Lactobacillus iners LEAF 2062A-h1] # 1 247 1 247 260 194 100.0 6e-48 MNKDSEEPIKHYERPSTPRGSVQKTSSSGNPKRRIRSVPSSTVAKRKSKRRSILVLATLV LLFLVCVPLVIAHFTSRSDNDSQKSELVHDRDSKDSHKKKKHEKKSDDDDDADKDDSSSD DSSNEKSNDSSTTTASNNTQDSSHNSNSSAASTKTTHVNQHKGVSAKASHSKAATSKAKV EHKVDKGSEKGKDNGSKKDEKPKSNEKADKGSEKGKDNGSKKDDKAKDDKKSNANDKKSD SAKSSNTEKESKEKSSENKK >gi|311092080|gb|AEKJ01000013.1| GENE 26 28742 - 29461 795 239 aa, chain - ## HITS:1 COG:lin2063 KEGG:ns NR:ns ## COG: lin2063 COG1187 # Protein_GI_number: 16801129 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 4 235 3 234 244 265 59.0 5e-71 MKLRLQKVIAEAGIASRRKAEILITSGQVTVNGNLVTTLGTKVDDNDKIEVNGVPIHKEQ LHTYLLYKPRNVVSTVSDNKGRKTVTDFFKDLPYRLYPVGRLDYDTSGLLLMTNDGELAN RLMHPKNEIEKVYVAKIRGFLTASEIYDLKHGVTIDGRKTAPAKVKIIKTDKNRNIQLVQ LTIHEGHYHQVKNMFKAVNHLVEKLSRERYAFLTLKSLISGEYRELTHEEINKLKHSEN >gi|311092080|gb|AEKJ01000013.1| GENE 27 29480 - 30046 618 188 aa, chain - ## HITS:1 COG:SP1875 KEGG:ns NR:ns ## COG: SP1875 COG1386 # Protein_GI_number: 15901703 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pneumoniae TIGR4 # 1 182 1 179 189 151 45.0 5e-37 MSKEAQLEAILYLAGDEGITEDQLSQLLDIPALQLHEIIKKTKDKLEDDHDFGLSILRVN DVIKLVTKNSCSDIVGKYFQKDLNKNLSQSALEVLSIVAYRQPITRIEIDDIRGVNSAGA IQTLIWRGLVEISGKKEVAGHPNLYVTTEYFLQYFGYQSLDDLPLIESFSDSVIDSQQVE LFNNSDDI >gi|311092080|gb|AEKJ01000013.1| GENE 28 30048 - 30779 764 243 aa, chain - ## HITS:1 COG:lin2065 KEGG:ns NR:ns ## COG: lin2065 COG1354 # Protein_GI_number: 16801131 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 239 4 242 249 129 36.0 7e-30 MIDDTNLNLELPNFSGPLDLLLHLIKSQKIDIYDIPIAKITSQYLAYLSKWQTLDLKIAG EYFVMASSLLKIKSQYLLPKNDFDNEVIEDDDPREELVEQLVQYSIFKKISEFLDERQKS APITVAKEPSVASQKKVSLLPFGEISSKQLAHAFFVVLQRFQHKNNVGEVNIKEVSIEDM GLWLSSKLHSAHKLSFFELSAELTTVDELISLFLAILELCRNQKIKVYQESDFEDLVIES LVA >gi|311092080|gb|AEKJ01000013.1| GENE 29 30776 - 31177 402 133 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0885 NR:ns ## KEGG: LGAS_0885 # Name: not_defined # Def: riboflavin biosynthesis acetyltransferase RibT # Organism: L.gasseri # Pathway: not_defined # 15 133 1 118 120 93 40.0 3e-18 MFINVHILVFKVVAMLYKYKNNYEKIVMGYLSYFDEFKILKNLLAEIKLYNESDIYTVYL YRSNPTVDFQGVVCVQVEAEFVVIRYVSINPSYDREKIIEMIMKELHELYQNRLLCTMPD YAYLMKYIEESDT >gi|311092080|gb|AEKJ01000013.1| GENE 30 31146 - 32036 1137 296 aa, chain - ## HITS:1 COG:BS_ripX KEGG:ns NR:ns ## COG: BS_ripX COG4974 # Protein_GI_number: 16079408 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 1 295 1 295 296 263 45.0 2e-70 MNDSLEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQER DKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPIALSTTEVTKLIN MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISN VAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVT PHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI >gi|311092080|gb|AEKJ01000013.1| GENE 31 32029 - 32910 456 293 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 1 274 1 270 285 180 38 3e-44 MLGKIVSGKVIDKNTNAFFVQVSGVTFELNNVELTQEEPLKLGDIVKGFVYENKNHKHVM TQFYPFAQEDQYGWSTVTEVRKDLGVFLDIGLKDKDVALSLDDLPLDKSRWPKKGDRLLV RLETDHKDRIWAKLADGDVFTQLAANYPNNLMNKELTGTVYLTYEIGAFLITTDFYLAFI HESQSYRPLRLGEQVTGRVIGNSQYGRLNMSVLPRNYEEIDDDAQMILVSLNRESTKSLP FCDRSDANLIKQHFGISKSAFKRALGHLLKAKLITVDNDAGVISLFDKVENDE >gi|311092080|gb|AEKJ01000013.1| GENE 32 33025 - 34794 2645 589 aa, chain - ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 479 1 475 475 530 59.0 1e-150 MKKTKIVSTLGPASNDIETITKLAEAGANIFRFNFSHGDHPEHAERMRMVREIEKKTGLL LGVLLDTKGAEIRTTDQEGGKFIINTGDKIRISMDATKVGNKDKIHVTYPGLYSDTKVGG HVLIDDGLVDLLILEKDEANQELVCEAQNTGKIGSKKGVNAPGVEIRLPGITEKDTDDIK FGLTQGINFIAASFVRKAQDVLDIRQLLEEGHCEYVKIFPKIESQEGIDNIDEILKVSDG LMIARGDMGVEIPFINVPFVQKELIKKCNRLGKPVITATQMLDSMQEHPRPTRAEVTDVA NAVLDGTDATMLSGESANGLYPVNSVKAMADIDMRTEKQLAERNSLALQRFEEYQGSNVT EAIGESVVRTAEELGVKTIIAATESGYTARMISKYRPNADIIAMTFDEKTQHSLGVVWGV KPMLVEKPKTTEEMFDKAAELAKESGLAKDGDLVIIVAGVPLGQTGTTNLMKLQLIGTQL VKGLGVGEQSVIGSAVVVDSAEDANNKVQEGDILVAKTTNKDYLPAIKKASALVVEASGL TSHAAVVGLSLGIPVVVGATDAVSKVKDGSKITVDARRGAVYLGEASNI >gi|311092080|gb|AEKJ01000013.1| GENE 33 34832 - 35791 1253 319 aa, chain - ## HITS:1 COG:SP0896 KEGG:ns NR:ns ## COG: SP0896 COG0205 # Protein_GI_number: 15900779 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Streptococcus pneumoniae TIGR4 # 1 318 1 335 335 377 60.0 1e-104 MKRIGILTSGGDAPGMNAAVRAVTRTALANGVEVFGIRYGYAGLVAGDIFQMTSATVADK IERGGTFLYSARFPEFAQKEVQLKGIEQLKKHGIEALVVIGGDGSYHGALRLTEHGYNAI GLPGSIDNDIPYTDYTIGFDTACNTAMEAIDKIRDTATSHQRVFVVNVMGRDCGDIALHV GVATGADAIVVPEEEYDIKEIAETLKQGFANGKKHGLVVVAEGVMNAEDFKNELLKYGDF DARANVLAHMQRGGNPTVRDRVLSSKMGAYAVKLLLDGKGGLAVGIENNKLIAHSILDLF DAKHQGDYSLYSLNKDMAK >gi|311092080|gb|AEKJ01000013.1| GENE 34 35930 - 39052 2601 1040 aa, chain - ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 1019 1 1018 1108 657 37.0 0 MEIAGLQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIK PLLGMQLRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVTLNKLQ KYLGNLHIITTANQHSELRDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADKSESNYI NSVKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKHVGNHYLK TKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFDTSYEFLHHLAMT GLQAKFNKHDIPAKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSIGILTGPGRGSAA GSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNRRNEVVLYMFHKYGMDH VAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKITLSDAYKLSKDFRMLV NATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSLGIPVTQQTKKYV EALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDPATIKLFQKGKTDDIFQF ESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKNKEEKVVYPDPILINLLK PTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMKKIGVDFVNRAVQQGHSA AAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVALLNSNIYDKQKVT KYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDFVEQIMNLQRPIKS LTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYEDLLICIKMSGGNNVLFQA LEPKELDIKMPSNAQKEEWETSVLGFSPQIDPILAAQIYAKKYGFKPFSDFTFYDEGVSV GKMMDIKVITTKNNKKMAFAKFNDLHETVDFVIFPAVYESIKSILSVGKVYLLKIETQTD KFNANKFKFILLSVKQIDLK >gi|311092080|gb|AEKJ01000013.1| GENE 35 39139 - 39462 329 107 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0879 NR:ns ## KEGG: LGAS_0879 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 14 91 14 93 107 74 52.0 1e-12 MRSLKQNSHFTCINLKDIVNLFLIKNIIFVKIRTEEGIFMRYIITTVWAVIFVEIIGFIG SKLTQMAFNPCESALIGAAFGLLFTAIIPTVAIIKKNDSKNASNIVK >gi|311092080|gb|AEKJ01000013.1| GENE 36 39567 - 39758 289 63 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519001|ref|NP_964931.1| 50S ribosomal protein L32 [Lactobacillus johnsonii NCC 533] # 1 63 1 63 63 115 84 8e-25 MAVPARKTSKQKKRSRRGHIKLSVPAMHYDATTGEYRLGHRVSPKGFYKGKQVLNETKKE DNE >gi|311092080|gb|AEKJ01000013.1| GENE 37 39882 - 40676 169 264 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 10 250 7 240 259 69 28 6e-11 MEKTLDNKVVAITGASSGIGKSIALECAKNGATLILMSRSVEKLNSVAKAVQSLSQAPVY VYATDVSKVDQIDMTVDRIKHVVGRVDYLVNAAGFGIFEDFMHMDINTCEDMFRTNVIGL MYLTRLLAGMMIDQRNGQVINFGSLAGKVPTVKSAVYSATKAAVIQFSNVLRLELKPFNV KVLTVNCGPVKTNFFNIADKSGNYLSNVDRFMLNSDYVAKRVVKLFGCSVRELNLPFSLA ALAKLYQLCPTLGDWASIKFASKK >gi|311092080|gb|AEKJ01000013.1| GENE 38 40681 - 41607 891 308 aa, chain - ## HITS:1 COG:BS_yqjK KEGG:ns NR:ns ## COG: BS_yqjK COG1234 # Protein_GI_number: 16079441 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Bacillus subtilis # 1 299 1 299 307 325 54.0 7e-89 MEIQFLGTGAGQPSKGRNVSSTALKLLDELNEIWLFDVGEATQHQILETNIKPRKITKIF ISHNHGDHIFGLPGLLSSRSFQGDSGSLTIYGPAGIEQFVQISLKVSKTKITYPIKYVIL KDDGIIFEDKQFAVFTAKLDHRIESYGFRVVEKPRPGELQMDKLKQYNLPNGPILGRLKA GETVEYNGHVLNGKDFLGKPRLGRIVSIIYDTRPTNVIGQLAEDADVLIHESTFSGIDSK MAHRYYHSTCVDAATVALQHNVRRLFLTHISARYIGKNSRILEKEAQNIFSNTKLANDFD SYEIKARD >gi|311092080|gb|AEKJ01000013.1| GENE 39 41614 - 43536 1185 640 aa, chain - ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 6 634 3 600 605 360 36.0 4e-99 MKNKNRFITGYSGLRSLAVIGVILYHLNPNVFIGGYLGVLIFFVLSGYLVTDHMLFSYQT YGKYSNRLFYLKRIKKLYPQLISVLWISGAYILIFQRDILSKFNEIVLANLFNVYNIWQI FNGQSYFERFASNESPFVHLWTMSILGQFYLLWPIIMYILVYKLRTKKELFITISVLTIL SAIEMALLYKPGVDTSRIYYGTDTRFFALGIGALLAIVCPTNRLRIGIKKTNTILLDSLG AVSFIGMFILATNQCMNPMQAFPYMGGMFIFSILTAIMVAIIANPHSHWNLVLTNPIFNW IGSRSYGIYLYQFPIMIFFESQAKNLAYNVFFYRVSEIILILLISELSYRLIEKPFGSLK WYQVHDFTRKIFTINKRYLCQKLVAMVGLIIFILGTIAIFTAPTVKAKNADNSPLARQIK KNRRKQLEDNKKIIAKAKANKVKLAGKEKIVNWAKRRMKANIVNKDFERYGISQLDLQLA QKLCVTAIGDSVMAGSSQNLKKMIPSSLVDATVSRQLVPTINLFEKYKQNGALYPNVLIG LGTNGPFKMSDVDNLMRILGDKRRVFWVNVYVPSRSWQQPVNQLLSQAEKKYKNLYIINW NGFAKNHSKLLYADHTHPNVEGSKYYSVMITKYLVEHGKF >gi|311092080|gb|AEKJ01000013.1| GENE 40 43553 - 44836 1607 427 aa, chain - ## HITS:1 COG:lin1572 KEGG:ns NR:ns ## COG: lin1572 COG0536 # Protein_GI_number: 16800640 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 1 427 1 429 429 419 53.0 1e-117 MFVDQTKIEVQAGNGGDGAVAFRHEKYAPLGGPAGGDGGRGGSIYLVADSGLRTLMDFRF RRKFKAENGENGRIKSQYGRGAKDVFLKVPMGTAVYDFYTNELLGDLVGNGQKLRVACGG RGGRGNIHFATSTRTAPEIAENGEPGEFRTLRLELKVLADVGLVGFPSVGKSTLLSVVTK AKPKIAAYEFTTLTPNLGMVVLDDGRDFSMADLPGLIKGASQGVGLGIQFLRHVERTKVI LHLISMDPNNGRDAYEDYLTIRQELAGYTNDLTKKTEIVVASQMDIPGSEEKLQELKKKL NNKIIYPISSITHKGVRDLMIKAADIVYAANDQVETAPVVADKGEQEYVYKKLDDSFVVE KVDEHYFVISGDKLERLVQRINLDHTDGVMMLARKLKRMGIDDALREKGAQNGDEVTIGN FTFEFVE >gi|311092080|gb|AEKJ01000013.1| GENE 41 44924 - 46741 1468 605 aa, chain - ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 1 596 1 586 603 606 50.0 1e-173 MANQNIENKLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRRAELVRD INDFEIIVVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITNERDPEVKLTSIIK KDKGYYFGPYPNVYAAQATLKFIQKMWPLRRCSGKLGRPCLYYNMGQCLGSCFKKVSSDK YDHQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIML HDKLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNA KNRLLPNEILVPKGVNASSLAAVLKVRVKTPSRGQKKALLDMAYENSKIKLDEKIRLLEL NNLKTKGAQEEIFNALGLPYGSRIESFDHSHIQGTDPVSALVVFIDGMPAKHEYRKFKLK GEIEHQNGADEVKNTREVVRRRYSRMLKEHLVLPNLILMDGGKIQVDACLDVLRNELNVN IPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQAFYLITRIQDEVHRFAITFHRN LHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREASIEDLKGVGLTLTQAQSVKLVL ENSQN >gi|311092080|gb|AEKJ01000013.1| GENE 42 46868 - 47797 927 309 aa, chain + ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 2 308 3 311 313 247 40.0 2e-65 MKNIYFNHDGNIDDLVSLLILLQAPDIKLIGVSAIDADGYIEPSVDACRKMIDLFNLRND NLEVAKSTSRAVHQFPNEWRMATYSFNYFPMLNEYGTIKTPIAKLPAHLDMVDKIKKADD MVDLVMTGPITDLARALKADPSIQEKINKVYWMGGSLNGHGNVMSVDADGTQEWNAFWDS QSVATVLESDLNIQMVGLESTEELPLTDELRMHWAKMRQFPAIDLIGLGYSLIVSIPGAE LYLWDVLTTMSALYPEVVTSSIEAKAKIITSGLADGRMYKADDGKKLTLVTSANKELFFQ KMDEILKRS >gi|311092080|gb|AEKJ01000013.1| GENE 43 47809 - 47925 129 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLTMKSNNELEKLFNKFAILPDDKDKKKNSKNKDNKK >gi|311092080|gb|AEKJ01000013.1| GENE 44 47985 - 48362 478 125 aa, chain - ## HITS:1 COG:no KEGG:LJ1063 NR:ns ## KEGG: LJ1063 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 2 124 3 124 126 109 48.0 3e-23 MDNELNEIKAQSVAWLKNNLNFYRMDSQTIEVETPLIDSFGQNIYCFIIKKGEYYLISDG GWFLFKLDPDMSDSDFYNQAVDIIIGTGFEIDEETGEFFMEVSIDELPLALNQLAQLQVA LSYLK >gi|311092080|gb|AEKJ01000013.1| GENE 45 48399 - 48713 459 104 aa, chain - ## HITS:1 COG:lin2362 KEGG:ns NR:ns ## COG: lin2362 COG2151 # Protein_GI_number: 16801425 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Listeria innocua # 7 103 5 101 102 112 55.0 2e-25 MRDINIIKDEIVAQLAKVIDPELNIDIVNLGLVYAIDLDEDGICLVQMMLTTMGCPLADV LAKMVIKQLKNIPEIKNVDVRFIWEPAWTPDRLSREAKMILGVH >gi|311092080|gb|AEKJ01000013.1| GENE 46 48715 - 49596 1305 293 aa, chain - ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 290 1 290 299 295 59.0 9e-80 MYDSISEIVANSLSTKKPISELIIEQECTLSGLTRDAVFEKMKCNLEVMLASVERGIQGQ GVFSKTGLTGGEAVKVKKYRKLNKSLSGDDMMIAVEAAMATNEVNAAMGVVCATPTAGSS GTLPGVLYLLKKKLNLNQEQMLRFLFTAGGLGLVIANHSGIAGATGGCQAEVGSASAMGA AAAVEVAGGSAEQSAQALAIAISNLLGLVCDPIAGLVEVPCVKRNAIGTTNALISADLAL AGCTSLIPPDECIQAMSNVGKLMPEELRETGLGGLASTATGQAIKAKIFGKDV >gi|311092080|gb|AEKJ01000013.1| GENE 47 49617 - 50279 734 220 aa, chain - ## HITS:1 COG:BH2497 KEGG:ns NR:ns ## COG: BH2497 COG1760 # Protein_GI_number: 15615060 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus halodurans # 4 156 2 150 220 155 49.0 8e-38 MNQKYRSVFDIIGPIMIGPSSSHTAGAVAIGQAGNKLFGGIPKKVTVYYYGSFAQTHRGH GTDYAIAAGIMGLAADDYRVPNAIKLARKRGIDIRFVEEEGDSPIGHPNTALLDLKTDDR SVKLIGCSIGGGTIEIRGIEIFGIKMDISGPLPIIIYKIPFNKLYCATELMNYLNKVAPY NKQQSFNGTGFVLYEFDIINYISPQIVNSLHKKYPGIICL >gi|311092080|gb|AEKJ01000013.1| GENE 48 50360 - 50878 378 172 aa, chain - ## HITS:1 COG:no KEGG:LBA0863 NR:ns ## KEGG: LBA0863 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 21 168 20 167 171 112 48.0 8e-24 MKIFNIILGAILIIIFLVSLFRNKNHFIFLKALFLFLALIIGSTINFIVFLLLEYNFLNI DNGLKAGNLFILLGLMIIMSGLILYLYLLLLNWIFPLNSTILSIIEYYIQWTLIYVTIYQ VIFENLKKVQDIDIYIKVGNLLNPDVFVVMILPSFISAWIAVILLKKHNNQL >gi|311092080|gb|AEKJ01000013.1| GENE 49 50950 - 51537 690 195 aa, chain - ## HITS:1 COG:BS_ysxC KEGG:ns NR:ns ## COG: BS_ysxC COG0218 # Protein_GI_number: 16079871 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus subtilis # 1 194 1 193 195 199 52.0 2e-51 MKVNNSKFVISAVSDKQYPQDDLPEIALSGRSNVGKSSLINAVLNRRNLARTSQQPGKTQ TLNFYLVNTDLYFVDVPGYGYAKVSKEQRQKFGEMIQDYLETRADLKGLVLLVDARHDPT VDDINMFNYALCLNIPILVVATKIDKLKKSAIGQLESKIGLSLDLTQSQVTFLPFSSETK INIDKFWKWIENSIK >gi|311092080|gb|AEKJ01000013.1| GENE 50 51527 - 52816 276 429 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 157 412 258 459 466 110 31 3e-23 MSTNRRGDNEEIRCSFCGKLQSQVSKIIAGQDVYICNECIDISKKLVDEELKLDSVNEIK DIPKPIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGP TGSGKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDINRAQRGI IYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKIDT TNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIPEF IGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEFSTDALNAIATMALN KNMGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESVITKASDPIIVFEDRQTNNDLET DEGELIDEG >gi|311092080|gb|AEKJ01000013.1| GENE 51 52924 - 54252 1992 442 aa, chain - ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 424 427 395 54.0 1e-109 MSAKWEKTGKTTGELTFEISTEEISKGLDIAFKRVKKNLRVPGFRKGHVSRVVFDQFYGE EALYEDAVNAVLPVAYANAIAESKAEVVGQPKIMPVSMEKGKAWTFKAIVSTKPEVKLGD YKGVEVPKQNKRVLVKDVDAELKKRQEQNAELVLKDGKSAEGDTVTIDYEGTVDGTKFEG GSAKNYSLELGSKTFIPGFEDQLLNHTAGDEVDVVVTFPEDYSAKDLAGKEAHFATKIHE VKSKHLPKIDDEFAKDIDDSVESLDELKEKIKADLKKQKEEAAEDAIQEAAVKEAVNNAS VDEIPEAMINEDVDNQLKQYLGGMQRQGIDPKTYFKLTGTTEEQLRQQLATDAPERVKTN LVLEAIVSAENIEVTAEEINQEIKNLATDYNMDEKVVRRTLSDDMLKHDISIRKAINLVV DNAKEVAKKSSTKTATSEDSDK >gi|311092080|gb|AEKJ01000013.1| GENE 52 54378 - 55568 1374 396 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 4 396 3 407 407 533 65 1e-150 MAEKEHYVRTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGLAEAKDYAGIDAAPEEKER GITINTAHVEYETEKRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREH ILLARQVGVNYIVVFLNKVDLVDDPELIDLVEMEVRDLLSEYGYPGDDVPVIRGSALKAL QGDPEQEAVIKKLMDTVDEYIPTPVRDTDKPFLMPVEDVFTITGRGTVASGRIDRGTVKI GDEVEIVGLTDKVEKSTVTGLEMFRKTLDLGEAGDNVGVLLRGIDRDQIERGQVLAKPGS IQTHKQFKGQVYILNKDEGGRHTPFFSDYRPQFYFHTTDVTGKIELPEGTEMVMPGDNVE FTVELIKPVAIEKGTKFTIREGGRTVGAGQVTDIVD >gi|311092080|gb|AEKJ01000013.1| GENE 53 55738 - 56607 851 289 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1198 NR:ns ## KEGG: FI9785_1198 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 277 1 275 285 180 36.0 7e-44 MSVSDLKKLIELAQKALTIGDLERAKNCYLQYLSVQHDIKCVIALGNIFLQEKRPDEAYK LLKDESDLFSDDMLFKFYLKVLQERHFYIEAKQVSYLLGKPLAIEIVPIVGFDADKIMSD FHKLNIITQEDYIKLYSLDEETFIEFSKSLLLDPTTDFIVKATLCNDFIKLGVSKKINIR ILGQMRFFVPADTSIFYQNSIYRYLISFLKHHYENNPSKLNLLVNEITIFCEVIFPCIEF YIIDADKFARCFIDYINGESDNINEYTKLLNDVYAELYRFNYNYKIKNN >gi|311092080|gb|AEKJ01000013.1| GENE 54 56576 - 58462 1895 628 aa, chain - ## HITS:1 COG:SPy1020 KEGG:ns NR:ns ## COG: SPy1020 COG0595 # Protein_GI_number: 15675021 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 552 4 552 553 582 52.0 1e-165 MTQQIKIMMLGGVRENGKNMYGVQVDDEIFVLDAGLKYPDSSLLGIDIVIPDLQFFADYG DRVAGIFLTHGHADAIGALPYILRDYDIPVFGSKLTIELAKIAVQHENKQCNDDLFHVID EDTEIDFNNVTISFFKTTHSLPDSLGIDVSTEKGEIVYTGDFKFDPSAKKDYRMDFVRLA DISRKGVLALLSDSTNSESVLQNDQQPDIEKYILNVFKNHDGRIIVASKASNIVRVQEIF QAAAATERKVFLTGRDIGRIVYTAMQMGYLNVPKDILIHGKDLKNIPDKNILILETGRMG EPLKSLQKMATNRHRMIKIKNGDLVFIATTPSHSVETMVAQTSDIIYRSGGIVKQLGYDK HTSGHATGRDLQMLIDTLKPKYLIPVIGEYRLLEIHKNLAVEAGMDPENIYITKNGDCLL LDDDKFYLTDPVPAEDTMIDGSGVGDVGNIVLRDREILSDDGIFIAAVTIDRKKKKIVAE PLVSTRGFIYIKESHDVMDGASDVIKTTISNNFNHKKFDWTELKQDLHTNLEKFLYKETG RRPVVLPIVMEVNQNRHRAMVRRQANVSADHDDIEAVKANSNLNVISQIVKKGTYSNSAA VSKYKFNNRKIKIKRDIKNVRFRPKKIN >gi|311092080|gb|AEKJ01000013.1| GENE 55 58649 - 58918 412 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518932|ref|NP_964862.1| 30S ribosomal protein S15P/S13E [Lactobacillus johnsonii NCC 533] # 1 89 1 89 89 163 87 4e-39 MAITKEKKDQLVKEFARHEGDTGSAEVQIALLTEDINNLNDHLKLNKQDHHSYVGLLKKI GHRRNLLRYLKGKDIQRYRDLITKLGLRR >gi|311092080|gb|AEKJ01000013.1| GENE 56 59102 - 59365 307 87 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116629807|ref|YP_814979.1| 30S ribosomal protein S20 [Lactobacillus gasseri ATCC 33323] # 1 86 1 86 88 122 76 6e-27 MILMPQIKSAIKRVITSDKANKRNASDLSKLRTQVRKFKEAVAANADNVNDLHIEAARAL DKAASKGLISKNKANRDKSRLTKKVAK >gi|311092080|gb|AEKJ01000013.1| GENE 57 59402 - 60400 1115 332 aa, chain - ## HITS:1 COG:SP0765 KEGG:ns NR:ns ## COG: SP0765 COG1466 # Protein_GI_number: 15900659 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Streptococcus pneumoniae TIGR4 # 18 328 20 340 345 85 25.0 2e-16 MTLISLFKQSNKDKNHLLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYVDVLESGIDGLIA TISESSLFSLQRLIIVKNPIFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKI DKRKAIVKLLIKNVNVVETNFKAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLA LNNYLKLKNIVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGL TPIALLAIFESQLEFLLCVKILQKRGWVKDQIVDELDANPYRIYYALNNRLDITRLKQSI KYAIKLDYGYKNGTYTGASFLKAYLLNIIKNR >gi|311092080|gb|AEKJ01000013.1| GENE 58 60397 - 62676 1122 759 aa, chain - ## HITS:1 COG:SPy1408_2 KEGG:ns NR:ns ## COG: SPy1408_2 COG2333 # Protein_GI_number: 15675328 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Streptococcus pyogenes M1 GAS # 483 751 28 299 299 192 38.0 3e-48 MKSLNHISFYNLKNGQLFLLALILAIESIALFLATNIWQVLVSIFFIAYLLFVFYFKFKE AFLTILCILLVFFLWGSYRKNISEYKKIDSPIKVYPDKLSHSENLYFGCAKYKNSNLYIS INSNQQFIEKFKKGIPFWIKVDDSKINSLMPNTVPGQFNFKKWGLCREIKQQIQIKHFTI VNRKPSIYDLFYLIRYKIKEYLSKMPRLLSFFSHELILAENPDKVNNKDILNSYRNLGVI HLLSISGLHVSLYTMIISKFCSIIKRTERECFILCTVILFVELFLSAFQPGFFRATLTFL LSSFFKSKKIPLSLLDILSLVFIFHLFLQPSLLLNVGAILSYLLVVAIIATKKYSMIMQN IFVNLAILPILLHYFFQMNILTIIFNFLIVPIFNFVLLPITFINLVTFAIIPKLSFLFEM IMQTITKVIETVARAKIGIIIFGQINWWQTILLLILTFILIIKPKMILFKLRIYYWLSLG YLLFFILIHFPLYSQVAFIDVGQGDSILITTPLNRKCYLIDVGGKVNFGKKGNSGISQTE KILLPFLYSQGINKIDGIFLSHQDADHVGNLRDLLSYIRVKKIYFGDGLLDNNSFKRRIA GKVAHTKLINLLAGNLVQEANIKFHILYPFEKSVGKNEDSLSLMFNLSGDNWIFTGDLDR AGEVKIINNFNIKADYIKLGHHGSRTATDPKYLRQIRPKLAIISSGRNNRFGHPHAETLK TLNECKIPYLNTQDNGTIIFRHYLWNKKTIKTCFNKGRL >gi|311092080|gb|AEKJ01000013.1| GENE 59 62645 - 63166 639 173 aa, chain - ## HITS:1 COG:SPy1409 KEGG:ns NR:ns ## COG: SPy1409 COG1555 # Protein_GI_number: 15675329 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Streptococcus pyogenes M1 GAS # 3 173 54 219 220 117 40.0 1e-26 MIENEPLVQQNANQKKTNSDNKQHSSHSSKFITCDISGAINKSGVYTLKSGSRLNDLIKK AGGLRSDAQLRAINRARILKDQDQIYIPDKTEKVADTAAEANNVNSDDKQDKININTATA QELQKLSGIGQKRAEQIIECRERIGGFKSIDDLKQVSGIGVKTIEKLKPHLVL >gi|311092080|gb|AEKJ01000013.1| GENE 60 63320 - 64351 319 343 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 20 339 21 343 350 127 28 3e-28 MFKKKINIKVKFLIIGFCLVILLIFFIWPTNYYIESPGEVDRVSDYLVTKENKVSHNLYL VTVYGRKANMIDYLLSLLRSDESRFYSKEIMGDTNDNQYDQMQKCYMKSSQNNAIYVAAK SAGIKFKIRYQGVKVLEVLPQSRFYSKLKIGDMIIKANKKNIRSSAALIEYLKKYPLHKK LKLTILRNKKEKQVDGKLINIPRLKKHGIGITLLDNTEIITKAPLKICTPDIGGPSAGLM FTLACYQVFTHKRLSMHKKIVGTGTIEADGHVGTIGCIKQKTIAAARANADIFLVPAECL QGEKKSQTNYQIALKTAKKLKTKMKIVPVYNFRDAINYLKNNK >gi|311092080|gb|AEKJ01000013.1| GENE 61 64353 - 64850 295 165 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 5 165 2 161 164 118 38 2e-25 MKENNMRKAIFPGSFDPLTNGHVETVNIATTIFDKVFFVIMTNTNKKYLFTEEERLEIAK TVFKDNSKVEVIARPQELAVDVAMKLGANTIVRGLRNDADFNYEREIAAINKTLAPQLNT ILLLTGPENSFISSTMIKETATFGGDITKLVPDIVSEALKKKLNK >gi|311092080|gb|AEKJ01000013.1| GENE 62 64837 - 65391 383 184 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 182 11 193 199 152 41 1e-35 LILRIISGKYARRNLFTLKSNSTRPTSDKVKESLFNAMGQFFSGGRVLDLYAGSGALGLE AVSRGYDSAVFVDINYAACEIIKKNILLTKEKERFEIFKNSDLRAISILASRNYHFDLVF LDPPYAKEKIIKVMKIMLDANILNEKALIVAETDENVELPDVEGYSLINRHHLGRTKFKI YERK >gi|311092080|gb|AEKJ01000013.1| GENE 63 65388 - 65720 276 110 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1208 NR:ns ## KEGG: FI9785_1208 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 110 1 109 111 73 41.0 2e-12 MGLVFQDKNKVEQISDRVAIVVYLNKNYEKSFLYKFGNLIYASPKNDYAIMYISESKAKK IITMLTENKFVKSVEISKYNDLDFSSEHTTELMKNLKTTAENKLKNGEEF >gi|311092080|gb|AEKJ01000013.1| GENE 64 65698 - 66900 1164 400 aa, chain - ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 4 399 15 415 434 228 36.0 2e-59 MRQKLKYLDYSILIPYLLLSLFGIVMIYSASSDILLVNGFSPMVYMRKQIINFILAFLAL GVPFFTIKLELLKRLNFVFFFLVISIAMLFFLIVLKIISHGQAEINGAVGWIKVGPINVQ PVEFAKLALIFYLAFVLSRKDGHLIPGKIIENLKKPTMLVGLMLFLTILEPDFGGTSILF LIVCIMYSVSGMPIKYAVGGLLILFFSVLAIVFLLLHFQPAFITKYYQFQRLLAFAHPFE LEKTSGGQLVNSYYAIHNGGLFGVGIGNSMQKRGYLPEPYTDFILSIISEELGSIGGIAV VAILFFLVWRITEVGLHTQNQFNSLLCFGIATIIFTETFFNVGAVLGMLPITGVTLPFIS YGGSSIMALTAAVAVVLNIEANEKIMRARKDILNGVSFSR >gi|311092080|gb|AEKJ01000013.1| GENE 65 67044 - 68942 2454 632 aa, chain - ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 25 629 5 609 613 865 70.0 0 MIFISCDWSHGFFVSFREEYLLQRRDDIRNIAIIAHVDHGKTTLVNQLLKQSDTLPEHIQ IADRAMDSNAIERERGITILSKNTAVKYKNTTINILDTPGHADFGGEVERIMHMVDGALL LVDAYEGTMPQTRFVLKKALEAGVKPIVVINKIDRPGARPAEVLDEVLELFIELGASDDQ LEFPVVYASALNGTSSYEDDPAKQEQTMAPVFETICKNIPAPVDNSDESLQFQITMLDWD DYVGRIGVGRIYRGKVKVGDNITVMKIDGTKQNFRVTKLFGYFGLNRNEIQEAKAGDIIA ISGINDIFVGETIASAEDAEALPPLHIDPPTLQMNFVANDSPFAGKEGTQVTPKKLEDRL IKQTRTDVSLKVESTDQINSWTVSGRGELHLSILVEELRREGFEMQLSRPKVIYREIDGQ MCEPFEAVQVDTPDQYVGSVIDSISQRKGEMKNMESTGNGQTRLEFLVPSRGLIGYNNEF MSQTAGYGILNHTFEKYGPVIKNWAPGRRNGALVSINQGPSTTYSLQSVEERGQLFIGAG VEVYEGMIVGQSSRERDIAVNVTKGKNLTNTRAAGKDHAAAIKTPKTLTLEEAIEFLNDD EYCEVTPQSIRLRKKILNTNERKKADKKRDKD >gi|311092080|gb|AEKJ01000013.1| GENE 66 69138 - 69683 573 181 aa, chain + ## HITS:1 COG:SPy1958 KEGG:ns NR:ns ## COG: SPy1958 COG0242 # Protein_GI_number: 15675756 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pyogenes M1 GAS # 1 180 16 203 204 180 51.0 1e-45 MHDIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAA PQVGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVP RAYKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDKKNPFSLDEDTVVI S >gi|311092080|gb|AEKJ01000013.1| GENE 67 69820 - 70044 293 74 aa, chain + ## HITS:1 COG:L91273 KEGG:ns NR:ns ## COG: L91273 COG5503 # Protein_GI_number: 15672273 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Lactococcus lactis # 1 70 1 76 76 63 44.0 9e-11 MIYKVLYQKDQIVNPRRETTQTLYLKADNLVEARKLVEDNTPYNIEFIQELTGNSLAYEK QSPDFKLSTFPSNN >gi|311092080|gb|AEKJ01000013.1| GENE 68 70155 - 71732 1428 525 aa, chain + ## HITS:1 COG:SP0121 KEGG:ns NR:ns ## COG: SP0121 COG0595 # Protein_GI_number: 15900063 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 522 37 554 559 644 59.0 0 MDCGIKFPEDGEMGINYIISDYSYLIKNREKIKALVVTHGHEDHIGGIPFLLKKIPEIPV YATPFALALIRGKLDEHGILKNSVLHEEYEDTVLQFSKLSVTFFRTTHSIPDTLGIAVHT PQGTVIFTGDFKFDLTPVMDQPAPDFQKMAKLGEEGVLALLSDSTNAEVATFTKSERFVA KSLHNIITGIKGRIIFATFASNLYRVSTAIKAAVATGRKVAIFGRSMENGIQNGIDLGYL DIPEGTIVEASEINKLPPEKAMILCTGSQGEPLAALSRIADGSHRQISIKPGDTVIFSSN PIPGNTTSVNHLINKLYEAGADVVHGKIHNVHTSGHGGQEEQKMMIELTKPEYFIPVHGE YRMQVIHTETAQATGMAKDHTFVLENGDVLALTKTSSRIAGKIQIPDVFVDTSSTSEVGD IVVHDRKILAEEGLVVVVATIDYQHQRVLAGPDILSRGFVYMRESTDLITAAQKHIYHLL RVEMAKETKSDERELKKNIIETLQDFLYSRTERRPMILPMIIEKK >gi|311092080|gb|AEKJ01000013.1| GENE 69 71771 - 74113 2224 780 aa, chain - ## HITS:1 COG:BS_yrrC KEGG:ns NR:ns ## COG: BS_yrrC COG0507 # Protein_GI_number: 16079801 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Bacillus subtilis # 3 740 13 767 798 489 37.0 1e-138 MAELQLIGMVEGIIYENNEELFKILDVHIIQKIAGYDHDSIRVMGNFGEMDMSIRYKFVG ELIEHSKFGMQFKAKSYQAIMPAEYNAIVDYLASDKFAGIGKKTAEKIVSQLGEDLFTKI KDNNKVVEDLKLTDKQRQSLLNGILHMDELGEILTQAVQYGINKSIITDLYNKYKGETLS KIEEDPYALIAETRGYGFKIADSIANKLGFKADDSRRLKGALMQVLLDSALKDGNTYLLM DKWLENTGKLLYIDDFDLLANEVNNLKKDNKVVIFDDKVSLTNMYTIEKDIANDLKRISD SNKRDIPYLDDDLNSAIKHVEQKFDISYDDTQKKAIKTALNNSISILTGGPGTGKTTIIR GILATLQEIEKIPNDVLYTDDPPFLLAAPTGRAAKRMSELTGIDAKTIHRLLGLGISDLN QENINELNGEILIVDEMSMVDMFLFKNLVSSIFQLKHIVFVGDKDQLPSVGPGNIFSDLI ASSAFPTTKLSMIHRQSDDSSIVDLAHKINQNNAQANIFTKTPNYSFISCNPNSIADAIE KIVDIALEKGFCADDIQVLTAMYNGVSGINSLNDLLQNIMNPAKIDSKKVEVHNEIFRIG DRVLQLQNNPEKEIYNGQIGKVVGIDDSQKSAKLIVRFDDREVMLTSNDLSDLTRAYAIT IHKSQGSEFPLVILALTMQNYIMLKKNLLYTAITRAQQNLVMIGEEQAYQIALKTEGNDR QTDLCSKIQCIFNKNDIELKENETDNVDKHSENYILTPDLIYSNKIDPMIGMEDVRLDDI >gi|311092080|gb|AEKJ01000013.1| GENE 70 74141 - 74773 590 210 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1187 NR:ns ## KEGG: LGAS_1187 # Name: not_defined # Def: TPR repeat-containing protein # Organism: L.gasseri # Pathway: not_defined # 1 209 1 208 214 192 51.0 9e-48 MNKKIKKVLPSNKQEAYIHSLICKIDAAPSDANNYLELSTYLIENNSPEQALELLQKAKA CTNDDTSSLDYNIAICFYMLGDYQAAGKILDSMPNDDATLYQKALVAIKSGQYAKALAYA ITIKKPSMRTYELIGDCWLSQGKLVEARLEYKKIEASIRSAKINFLLGVTYFPEDRAEAE KYFERSKKQDAKYFYSAKKQYNSIVNMIKK >gi|311092080|gb|AEKJ01000013.1| GENE 71 74773 - 75429 682 218 aa, chain - ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 207 1 204 206 172 45.0 3e-43 MQLYFVRHGKTEWNLEGRYQGCHGNSPLLPESYEDIKRLSLFLKDTKFVAFYASPLERAL QTALKIKENMNIDVPVIADNRLREFDLGELEGMKFSEAERLYPDQIKAFRHEPDLYDPRK FHGESFSHMIKRGKLLIDEITSKYSGNNDKVLLVSHGAALCALIRSLEGYRLADLRKRGG LINTSLTILETKDSINFNELRWNETSYLGRKITSRDSI >gi|311092080|gb|AEKJ01000013.1| GENE 72 75458 - 76585 1175 375 aa, chain - ## HITS:1 COG:L52034 KEGG:ns NR:ns ## COG: L52034 COG0482 # Protein_GI_number: 15672819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Lactococcus lactis # 5 373 15 382 384 505 66.0 1e-143 MTDNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGVCTATEDFEDVK RVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLD ADYIAMGHYAKTVTDKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQVR MIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTADGRIVGKHSGLMYYT IGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTGLPS NDTTIHCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGEECLGGA IIDKAYRGNHQLQLI >gi|311092080|gb|AEKJ01000013.1| GENE 73 76596 - 76931 245 111 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1190 NR:ns ## KEGG: LGAS_1190 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 108 1 108 111 145 69.0 6e-34 MSNTVKINGSNKEYTLSSNIKIYALIDAGFKKTVNGNYTYEHPLYKDSPYNATAKLKMTI NKELNHLTMVVTDINGLTKVNIFKNKQLVSMVELLQFVLKDLEEKEIIVEN >gi|311092080|gb|AEKJ01000013.1| GENE 74 76962 - 77339 474 125 aa, chain - ## HITS:1 COG:lin1987 KEGG:ns NR:ns ## COG: lin1987 COG0262 # Protein_GI_number: 16801053 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Listeria innocua # 1 122 42 157 160 68 34.0 3e-12 MGRKTFDSFPGLLKNRHHVILTTDAEFTNYYKDNDQITIFNSLTDLRKWLLNEQKTIYII GGFSLFDALKDIPDRLEQTIIQNKFKADTKMAIIDYNRYKLINRKDFCKDTKNKYNYSFL TYVKL >gi|311092080|gb|AEKJ01000013.1| GENE 75 77484 - 78473 1035 329 aa, chain - ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 19 329 4 314 314 418 62.0 1e-117 MLRFFFRRIIELTKLEQPYLDLLQKIMLEGHDKSDRTGVGTRSIFGAQMHFDLSKGFPII TTKHVPFGLIKSELLWFLRGDTNIKFLLEHKNHIWDEWAFKNWVSSTEYNGPDMTNFGLR QQNDELFNIKYQEQMKIFTEKILSDVTFSKKYGDLGNVYGAQWRRWQTSRGDTIDQLGNI IEQIKTNPDSRRLIVSAWNPEDIPNVALPPCHVLFQFYVNDNKLSLQLYQRSGDMFLGVP FNIASYSLLLNLVARETGLELGEFVHTLGDAHIYKNHFEQVNKQLSRNAYDSPTLWLNPL KHKVLDFEMKDIKLIDYNHHGTIKAPVAV >gi|311092080|gb|AEKJ01000013.1| GENE 76 78504 - 79031 676 175 aa, chain - ## HITS:1 COG:FN1483 KEGG:ns NR:ns ## COG: FN1483 COG0503 # Protein_GI_number: 19704815 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Fusobacterium nucleatum # 3 172 1 170 170 210 58.0 9e-55 MAIDFKKYIASIKDFPNEGIIFRDITPILQNGTIYRAATHELAEFAKSKGAEVIVGPEAR GFIVGCPVANELGIGFVPARKPHKLPRAVKKASYDLEYGSNSLEMHIDAIKPGQKVVICD DLMATAGTLHATVKLVKELGGEVVGAAFYVELVDLKGVEKFSDIDIYSLVKYHGE >gi|311092080|gb|AEKJ01000013.1| GENE 77 79128 - 81413 1985 761 aa, chain - ## HITS:1 COG:BS_yrvE_1 KEGG:ns NR:ns ## COG: BS_yrvE_1 COG0608 # Protein_GI_number: 16079816 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Bacillus subtilis # 13 550 19 559 560 405 38.0 1e-112 MIWKKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKLADPFLMHDM EKIVDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPS LERYQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCN YPNQDYPFDDYCGAGVAYTICRALMTDNMSELLDLAMIGTIGDMVKVSGEGHIIVKRGLE ILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNLLLCDDEEE AEKLASIVEKLNDKRKQLTQEIFEICEKQIQQYGWQSKKTLVLYDHNFHEGVLGLVTNKI AEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGTVLTKFGGHEFACGLSLKKD SLVKLRNCFESSFQPVATSELVKMYDDELNLNDLTLDTYRQIAKVGPFGTDNPEPVFSIT NPHISKLIKIGQNKNHIKMCVSNFSNELDLIGFDRGYLDTNILPYVHMIMVTLGINKWNN KAKLQGIISDFIFAAPPSLTNVRIVDLRNENYIMGFADRYLLFDKKSIEIANNIDNISSN KIILETDYMQNNESVVFLDTPTSKEQFDRVLNNDFNKIYLRFLIDPYPISKLPDRELFEN IFSYIVNHPNLSLSDYKLVATYLGINYDCIKFVLRVFWELNWIDYDVKNELIKAITSPKV TKITDSKYFQAISQRLTFTDMLKNMSSDSLLKYIKDHNSNL >gi|311092080|gb|AEKJ01000013.1| GENE 78 81410 - 82096 744 228 aa, chain - ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 1 227 40 280 287 143 40.0 3e-34 MADKKTRRNINLRYILAFICFIVGLALIFSPQITSFIAKQSQNEVLHNLNKDKIRENEKS KGQFDFSKVKSIDVAQVTKSRIKNNAKAVGAIAIPSVHMYLPILKGLSNDSLSTGGGTMR PDQKMGHGNYPLAGHYMTANGSLFSPLESVKKGKLIYLTDLKKVYIYKIYMKKKVPPTAV WLVDDTRKNIVTLITCADWGANRWAIRGSLIKTVKATDEKLRIFKLRQ >gi|311092080|gb|AEKJ01000013.1| GENE 79 82098 - 83936 1889 612 aa, chain - ## HITS:1 COG:BH1342 KEGG:ns NR:ns ## COG: BH1342 COG0481 # Protein_GI_number: 15613905 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Bacillus halodurans # 10 606 10 606 609 809 66.0 0 MDLDKLKEYQKHIRNFSIVAHIDHGKSTIADRILELTDTVSERQMKNQLLDDMPLERQRG ITIKLNSVEVKYCAKDGETYFFHLIDTPGHVDFSYEVSRSLVACEGALLIVDASQGVQAQ TLANTYLAMDSDLEILPVINKIDLPSADPDMCKDEIEEMLGLDATEAVEVSGKTGKGIPD LLERIVQDIPAPSGDLKAPLKALIFDSKYDDYRGVVLSVRIEDGIVKPGDKIRIMNTGKD FEVTEVGVSSPYPVKKEMLVAGDVGYITANIKSVRETRVGDTITSSCNPTATPLPGYRQI PPMVYSGMYPVDNQKYDDLKEALQKLQLNDAALEFEPETSQALGFGFRCGFLGLLHMDVV QERLEQEFGMQLIMTAPSVDYHAIMNDGSVKLIDNPSDLPDAGEYQDVQEPFVKAEIMVP NDFVGAVMELCQKKHGEFQTMDYLDKFRVNVIYKMPLADIIYDFFDDLKSFTKGYASLDY EIIGYRSTNLVKIDMLLNHEPVDALSFIAHNDEAQTRARQMTSMLKKLIPRQNFEVDVQG AIGAKIISRATIKPYRKDVTWKIHTGDPDRRAKLLEKQRKGKKRMKAIGRVEVPQDAFMA VLKMDDDDIKGK >gi|311092080|gb|AEKJ01000013.1| GENE 80 84169 - 84399 124 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872354|ref|ZP_07732424.1| ## NR: gi|312872354|ref|ZP_07732424.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 1 76 1 76 76 81 100.0 2e-14 MVLTPAEKSKRYRERLKEKAQAGDKHAIEMLEKKREKSRTLKSRFSTCLSYIRLHATKEE IEQIKKVIKNKEKVNK >gi|311092080|gb|AEKJ01000013.1| GENE 81 84351 - 85070 844 239 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872376|ref|ZP_07732446.1| ## NR: gi|312872376|ref|ZP_07732446.1| hypothetical protein HMPREF9218_0097 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0097 [Lactobacillus iners LEAF 2062A-h1] # 1 239 1 239 239 404 100.0 1e-111 MKKAALEKQLIYGADPELGVSLMFLTNKKSRTISREGLKKALDELNFCEWQDFCLHCIEH RWYGFDYNFVFLDDFVNFPGFFKFGSEKEVKEKIKEEGSLAAVVSKERKELTERIIENAF LKWESKKVLIPRIEVKRVKTLFKEKEKFLKAWEQDKECYYKVDEKGFLRIEDTPKDSTWS ETEDYKEWDYTAGESYAHILKMENNSADWEGRFVKAKRIRRTKKWYLHQQKKAKDIEKD >gi|311092080|gb|AEKJ01000013.1| GENE 82 85359 - 86462 1291 367 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 1 211 150 347 444 103 33.0 8e-22 MKKNAYVVDVSSYNPSDLSTYKNCGATMAIVKVSEGVAYRNPKGAAQIASAKSLGMECAG YFFCTFSNDLNGARAQALYAVESAKIMGLPGGSYLATDWETGTGASYNNVSGGKSKNTQA VLLTMDVIASAGYKPLLYSGAYLLKSNIDTSVILSHYPASLWVASYPTSNAVSTANMNYF PAIPGVALWQFTDNWNGMHTDASIAVIDSDNKNNAEGDEDMGWHPEINVTELGRFKVTRP DGAQLYKDSDLTIPIAGAVKPAGGTYKIFKARNGAVNAGGEQWFSQADGLTKVNPLSVNQ KAKGIICKIIADDAYTQNETTPNCAGIKYLPLGSSWKVISKKGDYLEIGGEKDGRYVLAS KCKIILW >gi|311092080|gb|AEKJ01000013.1| GENE 83 86472 - 86894 518 140 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872392|ref|ZP_07732462.1| ## NR: gi|312872392|ref|ZP_07732462.1| hypothetical protein HMPREF9218_0099 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0099 [Lactobacillus iners LEAF 2062A-h1] # 1 140 1 140 140 242 100.0 7e-63 MINIKNVTEWLPWVSIVILFIAQKIASYYDFAQKNDPDIATKMKHIGLIAKWAVADQSRY ADKAGAAKFEDAVDKVVKETGVSTTLAKGAVQASYIDLKDKKDSQVPAVLPQASNPVVTE TTLKPVEDTSATVEDLDPHR >gi|311092080|gb|AEKJ01000013.1| GENE 84 86909 - 87217 364 102 aa, chain - ## HITS:1 COG:no KEGG:ELI_1319 NR:ns ## KEGG: ELI_1319 # Name: not_defined # Def: hypothetical protein # Organism: E.limosum # Pathway: not_defined # 39 102 37 100 102 67 40.0 1e-10 MIYVSVVTAFLTGGFFSFVQFLIKRHDDEKNHVDEKEHLVEEALLAILHDKIYTVGTEII RQGEISTEDMNNLEHLYEPYKALGGNGTCKKIMNKINELPIK >gi|311092080|gb|AEKJ01000013.1| GENE 85 87214 - 87369 192 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805038|ref|ZP_07699095.1| ## NR: gi|309805038|ref|ZP_07699095.1| XkdX family protein [Lactobacillus iners LactinV 09V1-c] XkdX family protein [Lactobacillus iners LactinV 09V1-c] # 1 51 1 51 51 67 98.0 4e-10 MMSTEELYKQILINLYQILKVMSVQEVKQFVEVGAITTADFKEITGVEYVQ >gi|311092080|gb|AEKJ01000013.1| GENE 86 87344 - 87679 376 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872378|ref|ZP_07732448.1| ## NR: gi|312872378|ref|ZP_07732448.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 1 111 1 111 111 198 100.0 1e-49 MQQYNYFFSNDSIPFDTITTTHEYKENHYPIVVTQPDPSLKEPKYDWAKGTWIENAAESQ GEKIHALQEEVKKFQSVIAQLTSIAQTQKMLATLIATKKGENTNDVNRRAL >gi|311092080|gb|AEKJ01000013.1| GENE 87 87700 - 88011 198 103 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872295|ref|ZP_07732365.1| ## NR: gi|312872295|ref|ZP_07732365.1| hypothetical protein HMPREF9218_0103 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0103 [Lactobacillus iners LEAF 2062A-h1] # 1 103 1 103 103 199 100.0 7e-50 MILGTLYADEKKVVFNMSNFEGWRYQKFKGLFLDTTKSLPDFYSSADETLDPQNPSEFAI NIWKGDVEITDETIILKNIKYDGWPTGAKPKLETHIFYLFEND >gi|311092080|gb|AEKJ01000013.1| GENE 88 88022 - 90025 1197 667 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872364|ref|ZP_07732434.1| ## NR: gi|312872364|ref|ZP_07732434.1| hypothetical protein HMPREF9218_0104 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0104 [Lactobacillus iners LEAF 2062A-h1] # 1 667 1 667 667 1095 100.0 0 MTIQNPRLPSLNLDVQKDVRFIVRPFRLTQADKGYIQPFRLTNSWSAYDVSEINLNFAAT KPDGQIIDIKKEPNRFKQENGIWLFYLPEEIAQAVGNVTAYFYVTDSSDTILATTTKFGY EVSARYGEDVKSNSYISEIEDMEKQFQEYLANAKAQVNAQNDLTNEYKEKLSQTLSEMSD KVATWLSNKTAAIDQDIKNRQDNLDRLNADYQAKYNELVASWQNKIAEINTDWEHRKAEI ISEAKNQRTDISNEWESLKSKFKTDRDSAISQANSDFKAKLDTIQADWNNQKSKLEQEIS DFKTNLENKVQVVTNKVSDLVTHTYPDLSSKTDAINTKIAQLKEEFSKIDFSTYATKEDL QKVQPDFSKIIVQNKTLDDKREIKIFSHHLIQNPDEGFWVVSLAEGDTVPRRVQKMDAAF PKMKEKIGNLQSTKADKSELSNYATKTDLNNKTERPLFEAMLQNYATKNDLNNHQVDLSN YATKSDLDHKADRSDLSSYAPKYELDNKADRSELSSYATKDDLNSHQPDLSNYATKSDLD NKADRSDFSYYATKNELDNKADKSELSNYATKDNLGSKADRSELSNYATRGDINSAIQNV RIKQDSLDSGNNYTSGKIYSPEWSDGYLTFDMSGSYATYKTRSLVNHMSAMQEQITQLQL EVKKNQT >gi|311092080|gb|AEKJ01000013.1| GENE 89 90006 - 90230 291 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872303|ref|ZP_07732373.1| ## NR: gi|312872303|ref|ZP_07732373.1| hypothetical protein HMPREF9218_0105 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0105 [Lactobacillus iners LEAF 2062A-h1] # 1 74 1 74 74 103 100.0 5e-21 MSFFKDADTIDLAIIAKEYEKINREVMHENLVLRIQLRQHTEREKELLEILKEKIPEFYE VLKKGDEKNDNTES >gi|311092080|gb|AEKJ01000013.1| GENE 90 90233 - 92254 2232 673 aa, chain - ## HITS:1 COG:SPy0700_1 KEGG:ns NR:ns ## COG: SPy0700_1 COG4926 # Protein_GI_number: 15674761 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 3 350 2 381 431 152 30.0 2e-36 MSIPRIYPDGATQASANGLGRLSDATRLEVTEEINGIFELEMDYPIDGINFELIKKNRLI YVDKQFFQIYEVSKSLSNIVTVYAEHISYRLSHIPVAPFTATGTPSQIWKEIKTHAVIDV PFDFESDIQDSEKFVIDKPRSIKDILMSSEDSFLSNFGGEFEWNNWNIKFNSRRGIDTSY VVRYGSNLTDIKQEENLQEVDTALFPYAFKHEKDKDTVVYLPEKIIKTKNANLFSYTRIL PVDFSDKFENDQIPTADALRYLSDIYIKDEKVGDPQVSIDVSFVDLAQTLEYKGMLSAID LHLGDRMTVIYQKIGLHVVAEITKTVKEPLQDRFKVLHLGDFGESFTSSVIRNNKKTKVD LSRFDTRLEETKKDTQNEFEKQSAETNQRFEQQSTETNQRFEKQSAETNQRFDDFDKSTK EKFSKQQEELENQKDESERRYLEHNRKFTELQQETSNKIKSTKESMDSELSAHQQAINEQ MEKAKKAIRAVEEKTAKEIDDARDSIMNFVSRNSEGAPLEFYDEQGKLVKGIPPVSTIKS KDGKFELNASGFNFGNHVLGGNGELYADGIYGNKIEGYSIIGAHISGGTIQGVTIEGDSY FRSSGAGGIAVVSGDSGFSFGACAMGSGHISIGTGNWNGTDFYTSGDVICSSVVVGGMAL TSSDVAKLQRLKG >gi|311092080|gb|AEKJ01000013.1| GENE 91 92251 - 92979 340 242 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872337|ref|ZP_07732407.1| ## NR: gi|312872337|ref|ZP_07732407.1| putative phage tail component, N-terminal domain protein [Lactobacillus iners LEAF 2062A-h1] putative phage tail component, N-terminal domain protein [Lactobacillus iners LEAF 2062A-h1] # 1 242 1 242 242 483 100.0 1e-135 MIKQLIVGEYDLSDWGVQFGSKSLYNAPKRNVENISVPGRNGDVIIDHGNWENIDVTYSC FIEGKAKERIFDLKQVIISQLGYVKISDSENLDEFRLGYYKEGLDDINPSLEVKNIKFNI TFNCKPQRFLSAGDEWHSLKNGDRLYNPTLFAFSPLFKIQTSDSDYGYIEIDGYSIKVKN THGVEYLYIDTETMQCYSDNELLNDCVEFSSDNTLKVAPGGRQVSISSNIYNVEVKTRWF TL >gi|311092080|gb|AEKJ01000013.1| GENE 92 92976 - 94868 2055 630 aa, chain - ## HITS:1 COG:BH0960 KEGG:ns NR:ns ## COG: BH0960 COG5412 # Protein_GI_number: 15613523 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Bacillus halodurans # 94 574 36 506 584 132 25.0 2e-30 MKDAEKLTGKKYKIGNFADTVEAIHAVQKSMGITGTTAKEATTTLSGSFGMLKDSFTDFL GSLTGTSPIPLDTALHNLISSAQTFAGNLAPMLLKTIENIGAVIGKIFDGLPAPVQIGIA TITTFIGVFKALKMAMQIGSVISQVQSAISGLFAVLAANPIIAIIAAVAALAAGLYIFFT KTEMGKQIWASLCSFMTSAWDSVKEPLTSAWNALVAVFTTVWNTISTIVTTGINLVQTAI QVALPIIQAIWTTVWNALSTVLSVVWNVISSVVTTAINIVQGIIQAVMCAIQGDWSGAWD AIKGVINIVWNAIKNVVTTCINLVMGIIKTILSAIKSFWDATWNAIKSIAGAIWQGIQNA ISTYINAIKAVIQTTMNIIKTVWSTTWNIIKTVATTLWNGIKIVIQTAINVVKGIIQAVM CAIKGDWSGAWNAIKGVALSIFNGIKSAISNAMNGAKSIVSSAVNGIKKTFSSLTDLVGR AGKWGSDLINGFVRGIRNGISAVGKAVKGIADKVRSFLHFSEPDVGPLSDFHTYAPDMLA SFANGIKDNIPLVTSAVSKLADMTSGTLAMAVEPSPFVPGTGQFYPGNSSYNNQTTVNIY ATPEQNAKDIADEVIEKLNREYRRKKVATT >gi|311092080|gb|AEKJ01000013.1| GENE 93 95308 - 95838 579 176 aa, chain - ## HITS:1 COG:SPy1448 KEGG:ns NR:ns ## COG: SPy1448 COG5412 # Protein_GI_number: 15675357 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 2 176 3 176 785 127 49.0 9e-30 MTEIGKAYVQIIPSAKGIQAGVASVLNKDLPPAGQAGGSTLGSSLIGKLKAVIGTAAIGK FIGSAITEGGKLQQSIGGVETLFKKSAGTIKQNAMTAFKTAGLSANQYMENVTGFAASLV SSLGGNTKSAARLANMAMVDMSDNANKMGTDMNSIQMTYQSLARGNYAMLDNLKLG >gi|311092080|gb|AEKJ01000013.1| GENE 94 95831 - 96208 293 125 aa, chain - ## HITS:1 COG:no KEGG:SP670_0088 NR:ns ## KEGG: SP670_0088 # Name: not_defined # Def: phage protein # Organism: S.pneumoniae_670-6B # Pathway: not_defined # 1 118 1 121 128 105 48.0 6e-22 MLKMDSDSLECDFAEYYHIYNIKQLGLRQLSIYAFGLPDDSRIKKLISKQKVSFETYLQA VAVDALQLLVWSKTKDAQHSRNRPKSIAQSLLPKAEVEDDHQNFNSGAEFEKARQKLLKG VVKHD >gi|311092080|gb|AEKJ01000013.1| GENE 95 96220 - 96507 317 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872387|ref|ZP_07732457.1| ## NR: gi|312872387|ref|ZP_07732457.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 1 95 1 95 95 140 100.0 2e-32 MSKDRAKYFEGVTPTGFRYSVERDVVDDMELIDLLADLEDGSISALPKILLKLLGKKQKD DLYQHCLDKESGRVPSSQVMEEVKAILTDPNLKKS >gi|311092080|gb|AEKJ01000013.1| GENE 96 96500 - 97114 881 204 aa, chain - ## HITS:1 COG:no KEGG:MGAS10750_Spy1291 NR:ns ## KEGG: MGAS10750_Spy1291 # Name: not_defined # Def: major tail protein # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 5 185 8 187 193 143 45.0 4e-33 MTQNKNLVSAFRPQTAGAISYAPLGTKVPTNAIDELDTKFVKLGYISEDGMTKSYDFDSD TEKAWGGDVINNIFNGKTSTFEFKLVELLNSEVNKAVFGGKNVTGDLENGLVVKDTNTEP ESFAWVVDMIGKNGVLVRIVIPSASITDMDDTTYATSESAGYDITITPQANAEGVTNITY IQKPKTVAAENAPVASTGGETHNV >gi|311092080|gb|AEKJ01000013.1| GENE 97 97130 - 97459 411 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872282|ref|ZP_07732352.1| ## NR: gi|312872282|ref|ZP_07732352.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 1 109 1 109 109 190 100.0 3e-47 MIESLLVRYLLSKGVQVALERRQGIDVIIDKTSSHLENFQFSHTFVIQVYGESKAIAAEK SYKILAYMLDLPNQEKRIADVKLNSGPYDFSQIGTKEYRYQTYYEVYEY >gi|311092080|gb|AEKJ01000013.1| GENE 98 97452 - 97703 416 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872267|ref|ZP_07732337.1| ## NR: gi|312872267|ref|ZP_07732337.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 1 83 1 83 83 132 100.0 1e-29 MSKVKFVLNHAGVAEILKGAGIQSALSKVGTQIANSAGKGYGTRTAIRPTRAVTTVYPAT VAAHFDNLKKNTLLKAMGSGTND >gi|311092080|gb|AEKJ01000013.1| GENE 99 97700 - 98032 519 110 aa, chain - ## HITS:1 COG:no KEGG:LLKF_1074 NR:ns ## KEGG: LLKF_1074 # Name: pp145 # Def: phage protein # Organism: L.lactis_KF147 # Pathway: not_defined # 1 109 6 114 115 85 39.0 4e-16 MIATETVILINHKQVGVDEFNAPTYENVQKAISDVIVGSPTFDQQVTEFNLSGKRLAFIL GIPKGDKNDWEDSTVLIRGKKFKTYGPPLEQTEANVPLRWNKQVKVERFT >gi|311092080|gb|AEKJ01000013.1| GENE 100 98051 - 98449 592 132 aa, chain - ## HITS:1 COG:no KEGG:LLKF_1073 NR:ns ## KEGG: LLKF_1073 # Name: pp144 # Def: phage protein # Organism: L.lactis_KF147 # Pathway: not_defined # 5 128 4 129 132 155 65.0 6e-37 MCKAFATLDDIISLFRTLTMEESERAKALLPIVSNSLRVEAKKVNRNLDEMAKDEAYASV LKSVTVDVVARTLMTSTNSEPMIQSSESALGYSSSGTYLVPGGGLFIKNTELARLGLKRP RWGMLDIYNIQF >gi|311092080|gb|AEKJ01000013.1| GENE 101 98472 - 98615 195 47 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872358|ref|ZP_07732428.1| ## NR: gi|312872358|ref|ZP_07732428.1| hypothetical protein HMPREF9218_0117 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0117 [Lactobacillus iners LEAF 2062A-h1] # 1 47 1 47 47 66 100.0 8e-10 MKVYENENHDVVVTESELKGTWKVISEISTQLPGTETNQTATPVMSN >gi|311092080|gb|AEKJ01000013.1| GENE 102 98627 - 99529 1247 300 aa, chain - ## HITS:1 COG:no KEGG:SAG0587 NR:ns ## KEGG: SAG0587 # Name: not_defined # Def: prophage LambdaSa1, structural protein, putative # Organism: S.agalactiae # Pathway: not_defined # 4 298 3 297 300 428 71.0 1e-118 MPNESLKTGQLFSPELVSELFSKVRGKSTLAILSTQQPIPFNGVEQFTFNLEGNAQIVGE GDAKKGNKATLSSKTIRPLKFVYQARITDEFKYATGEKRIDYLKAFADGFSKKIAEAFDL AAIHGLEPYSMSDASFQPNNSFDGVVTDNVVAYQGDKIDDNIEAAVSAVVANGYSSNGLA LSPLAGQDLSKLKGANKQAIYPEFRFSQNPGSFYGMTTDINKTLVAVGGKAEKDHAIVGD FQNMFKWGYAENIPLEIIEYGDPDGAGRDLKQYNEILLRAEAFIGWGILDPKAFARVKEG >gi|311092080|gb|AEKJ01000013.1| GENE 103 99548 - 100000 693 150 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872360|ref|ZP_07732430.1| ## NR: gi|312872360|ref|ZP_07732430.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 1 150 1 150 150 228 100.0 8e-59 MDRKFLEELGIDKDLVGKIMSEYGKSIKTYKDQLNELETLKQSNADLNKANQDASSKYTQ LETSLKEKQTSIDNLTKQLAGINLQNLKVQVALENGLPYTLANRLNGEDQETLVKDAKQL ASLLKCPEVPMKSTEPQEKDAWATLAENLK >gi|311092080|gb|AEKJ01000013.1| GENE 104 100148 - 101533 1732 461 aa, chain - ## HITS:1 COG:no KEGG:LLKF_1069 NR:ns ## KEGG: LLKF_1069 # Name: pp140 # Def: phage terminase # Organism: L.lactis_KF147 # Pathway: not_defined # 3 461 6 469 469 609 62.0 1e-173 MTRLGNPRPTRSVILPYEKSKAQEAVDFYEKSGRKAQQWQKDLLKDIMAVNDDGLWTHTK FGYSLPRRNGKNELVVMREFWGLKNGEEIMHTAHRISASHSAWEKLCYVLDKAKIEYRSI RAKGQELIELEDGGRVQFRTRTSNGGLGEGVDLMIIDEAQEYTDDQESSLKYVVSSSHNP QTILLGTPPTAVSAGTVFPNFRKAVLNGDKPDNGWAEWGVTEKKDVHDVESWYLTNPSLG TIFTERSIRDEIGPDTDDFNIQRLGLWISYNQKSAISSQDWETLQVKRLPKLVGKLYVGI KFGNDGANVAMSIAVKTATGKVFIESIDCRSVRSGNQWLLSFLKEANVEKVVIDGASGQG LLEREMKDARLHPPILPTVKEIIHANADWEQGIYQGTIQHKGQPSLVQIVTNCEKRNIGS SGGFGYKSQFDDMDISLMDSCILAYWACVESKPAKKQKVWY >gi|311092080|gb|AEKJ01000013.1| GENE 105 101695 - 101838 98 47 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501592|ref|ZP_05744494.1| ## NR: gi|259501592|ref|ZP_05744494.1| biotin-acetyl-CoA-carboxylase ligase [Lactobacillus iners DSM 13335] biotin-acetyl-CoA-carboxylase ligase [Lactobacillus iners DSM 13335] # 1 46 14 59 60 89 100.0 1e-16 MYTLYRIKIWFIQTFCCVHEWEVVVKDIPFHGTLYRCKKCGKGTTKT >gi|311092080|gb|AEKJ01000013.1| GENE 106 101912 - 102082 270 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312872338|ref|ZP_07732408.1| ## NR: gi|312872338|ref|ZP_07732408.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 1 56 1 56 56 72 100.0 1e-11 MAKNGPKGGGRKGAVCSRSQVKNPKTNLYTKRNTQTGKFMDVKTTGGKFKGVRIEK >gi|311092080|gb|AEKJ01000013.1| GENE 107 102066 - 102371 339 101 aa, chain - ## HITS:1 COG:no KEGG:LMHCC_2978 NR:ns ## KEGG: LMHCC_2978 # Name: not_defined # Def: phage protein # Organism: L.monocytogenes_HCC23 # Pathway: not_defined # 1 93 1 90 99 75 43.0 8e-13 MDKPLTINVAGLNYKVVVTEYFKASDDDRNLWGYCDYGDLTIYIRKSLSEERKQQTLIHE LTHAVFSEAGFTEQDEETVTRLSSVLYQVLKQNPHIFTFQS >gi|311092080|gb|AEKJ01000013.1| GENE 108 102574 - 102774 362 66 aa, chain - ## HITS:1 COG:no KEGG:smi_0097 NR:ns ## KEGG: smi_0097 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 7 65 9 68 69 82 63.0 6e-15 MKTTTEIILINGEECIHCPVCERIVPLFDVCECNWENTGETNIDGGPNKMTLTEAREAYA KGLKIK >gi|311092080|gb|AEKJ01000013.1| GENE 109 102743 - 103894 1191 383 aa, chain - ## HITS:1 COG:no KEGG:SAG0583 NR:ns ## KEGG: SAG0583 # Name: not_defined # Def: hypothetical protein # Organism: S.agalactiae # Pathway: not_defined # 1 278 1 298 406 134 27.0 8e-30 MEQDITPKLWESIQKTFWANLKQITKGKSYKDADNYADLVGQAMAKAFHDNAVNLPNDKM YFNIADRLIKGALKQSHELVANYTANVQTALNKQAGLGIKGIKANMDEVKAKNLVEVACN AERYSEVALKVEQAMTSFARSVVADTMKKNVELHYKLGLSPKIVRKLGRGSSKKRSTSGA DCEFCTERVGTFPYNKDNINKGIFSRHAHCTCTLEYFPGKGAKAEKVRAWQSMEEQENRS EYKTLSETLGRRLQVSLSDFQEMKYNNSEEYKELAERAEWLRSEFPSEKSLNGHFNKHRN EFHYELTKEKYNEIASVLLSESIGNNIIGYDTNSGRRVRYDKKNNIIAIGSRTSTGKVRI NTLLRPKERENYYNENYNRDHSN >gi|311092080|gb|AEKJ01000013.1| GENE 110 103803 - 105116 1214 437 aa, chain - ## HITS:1 COG:no KEGG:SP70585_0057 NR:ns ## KEGG: SP70585_0057 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_70585 # Pathway: not_defined # 1 415 1 427 434 521 59.0 1e-146 MEKRGIDYLKQKLALFRSGAQTKYDYYDMNAILANNSILMPEKLRGRYEAVIGWCTKAVD ALADRLVFREFNNDIFDLNEIFEVNSSDIFFDSAILSALITSCCFVYVSLDNDGIPKLQV IEGTDATGVIDPITGLLTEGYAVLDRDKLSQATLEAYFEPGKTYYYKQNQLVKVVETNAP YASLIPIIHRPDAKRPFGRSRITKGCQYFQNLARKTLERSDISAEFYSFPQKYVTGVSQD AETFDNWKATIASLLVFQKDENGDSPHLGSFPQQSMTPYLEQLRSCASGFAGESGLTLDD LGFPSDNPSSAEAIKASHETLRVTARKAQRCFGSGFLNVGYIACCMRDEFPYRRSQFYKT KPKWEPVFEADATTMSLVGDGAIKINQAVPGYMDKDVIRDLTGLEGADGTGYNSQTVGID SKDILGESQANNEGQKL >gi|311092080|gb|AEKJ01000013.1| GENE 111 105228 - 105548 366 106 aa, chain - ## HITS:1 COG:SPy1468 KEGG:ns NR:ns ## COG: SPy1468 COG1403 # Protein_GI_number: 15675375 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Streptococcus pyogenes M1 GAS # 2 106 4 110 114 148 64.0 3e-36 MVRADRQGAHRVQFERNRRKILRTQNVCGICGKPVDVSLKPGNPMSPVVDHIIPIDKGGH PSDINNLQLAHWCCNRQKSDKIFKNQTEPKVLGNRNLPQSRNWAQF >gi|311092080|gb|AEKJ01000013.1| GENE 112 105868 - 106857 901 329 aa, chain - ## HITS:1 COG:MYPU_0820 KEGG:ns NR:ns ## COG: MYPU_0820 COG0286 # Protein_GI_number: 15828553 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Mycoplasma pulmonis # 4 194 97 281 332 87 30.0 3e-17 MSGLISNPPYNIKWEPYEDKRFIPESAPKSNANYAFIQTALAEIDHQAVFLLPRSVLSSS NKKEKEIRKWLLKEGYIQGVIELPERMFESTPISVCLLVLNKKKKTTDVMMIDAREMADK EERYQKGQYGSRAHTNRTYEKKVNVLSDKTIETLVQCINTGTCIKISRLVHLELIEKEDW QLVPSRYIAYENKNNSCRSFEDIVRDINRIAKLRNAVKLVVNETLAKKLKLDITSEDLKK SKELVNDLNPTVRDLVDDSLISPDYLQLTKNKNQLEFKQNDKEIQSEMMTILFNMWKQHI VFLNNMENQYLKELRDALLPKLMSGEISL >gi|311092080|gb|AEKJ01000013.1| GENE 113 106838 - 107347 563 169 aa, chain - ## HITS:1 COG:lin2410 KEGG:ns NR:ns ## COG: lin2410 COG0286 # Protein_GI_number: 16801472 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Listeria innocua # 46 157 45 172 237 60 29.0 1e-09 MELQALRDRLMELFDIKSIQDLGAKLLDCVLTNDQQKMTNYVKLVDGDLDTDYLQNIYQY YYANREDLGQDFTPISLAKLIGKFSEQENPVIDMCAGSGALTIQSWCLNPHRQFICYEFD QNVIPFLLFNLAIRNIEGQVINSDVLKQEVFKTFKLEKGERFSHVWIDQ >gi|311092080|gb|AEKJ01000013.1| GENE 114 107884 - 108366 319 160 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0597 NR:ns ## KEGG: LGAS_0597 # Name: not_defined # Def: phage related protein # Organism: L.gasseri # Pathway: not_defined # 3 157 5 158 176 181 57.0 1e-44 MCDLGLIPDYYETARTAKKFLNRNFQHYLNLCGMHRNQLKSPQLSFAPGSTYQNGVEKRA IADLQTQIDVTDPAKRVVSAIYRSMDNCTDTMLKPYRKILLGTYIEGKTISQLSIETHLS EKSISNKKASALCEFADRLEYWKRFYNCASEIPYLIVEKR >gi|311092080|gb|AEKJ01000013.1| GENE 115 108388 - 108606 131 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804996|ref|ZP_07699053.1| ## NR: gi|309804996|ref|ZP_07699053.1| hypothetical protein HMPREF9213_0841 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9218_0130 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9213_0841 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9218_0130 [Lactobacillus iners LEAF 2062A-h1] # 7 72 1 66 66 109 98.0 6e-23 MGGGRIVRSYGVEINKSNYKVKSTRELEHALITCDAEMEDSIFGTDIFRINKLKEIQELK PLVEKELKSRKR >gi|311092080|gb|AEKJ01000013.1| GENE 116 108588 - 109046 411 152 aa, chain - ## HITS:1 COG:lin1248 KEGG:ns NR:ns ## COG: lin1248 COG4570 # Protein_GI_number: 16800317 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Listeria innocua # 1 147 1 134 145 68 35.0 4e-12 MKTFYLVVPGEPVGKARPRVTRFVTYTPKKTLEYENRIRHYASSYNLAPITEQCSLKISA YFSVPKYYSKKRKANCLSGLEKPTKKPDIDNVAKSVLDALNPKFKVNKATRHRVMILPGI YEDDKLVTDLEVHKFYSVTPRTEIEITWEGDE >gi|311092080|gb|AEKJ01000013.1| GENE 117 109043 - 109750 389 235 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872302|ref|ZP_07732372.1| ## NR: gi|312872302|ref|ZP_07732372.1| hypothetical protein HMPREF9218_0132 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0132 [Lactobacillus iners LEAF 2062A-h1] # 1 235 1 235 235 458 100.0 1e-127 MLKNEKIGLTKESEENKTLIIKSKIRTFRGIMLEYIEKLVEKYGQDPWNEDDIDYKMMEL AREKLEMWQSRIRSCKSIDVKHDVTKHYTYRAELKNANSIEKKIIKLLAKGKGLAATARG AHTTQSVVLEVAHKRNLQVNFLFHFCLVDINDIRPNFYSSELKSLAREMHIAPCKLTKIL AENDVEILKKRGYKLWQGNFGWQHMPIGSLFTTSQKDCIRCKKGETFSESEVVGV >gi|311092080|gb|AEKJ01000013.1| GENE 118 109737 - 110285 457 182 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872277|ref|ZP_07732347.1| ## NR: gi|312872277|ref|ZP_07732347.1| hypothetical protein HMPREF9218_0133 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0133 [Lactobacillus iners LEAF 2062A-h1] # 1 182 3 184 184 354 100.0 2e-96 MSKKHIYLPRLKMCKPKETFKVPCTEVIIAEDENLAAIVSVLVNNEWLLLPARLYKVFGR EIAVGAIEGENAGEAKAYMYDTKTGRAIFIQTVKARDNDLHTEIFRTTQQMLEKLECDCL ASLLYIDGINFFLQVDLQAKENKSIQLSRPVLKVKRYKTTEEMMDSYIKNYGKDWMKKNV KK >gi|311092080|gb|AEKJ01000013.1| GENE 119 110421 - 111338 725 305 aa, chain - ## HITS:1 COG:no KEGG:Clole_1831 NR:ns ## KEGG: Clole_1831 # Name: not_defined # Def: hypothetical protein # Organism: C.lentocellum # Pathway: not_defined # 11 253 8 203 256 127 39.0 7e-28 MGTELEQQQPGYYSILTASVRYDKDLNANEKILFSEITALSNKYGYCTASNKYFSNLFQA DERSIRRWVSNLKQHGYIKINLITKDKEIIARRIYPMSGGGDRNVRGYGQKCPEGGDRNV LYNNTSNNNTSINNNILSGKEPDPTPEPEEKENSEFTKKTSDSKKSKTTSKTENIPYDRV IKYLNTKAGTNYRATNKATQRLIKARFNEGMTTKDFKKVIDNKCDDWLKDQKMCEYLRPA TLFGSKFESYLNQKPKRLDQSATDWHEYSTRADTDTNVSSDNAEPKLSAEELDKIFNSFG KSENT >gi|311092080|gb|AEKJ01000013.1| GENE 120 111350 - 112123 988 257 aa, chain - ## HITS:1 COG:no KEGG:LJ1449 NR:ns ## KEGG: LJ1449 # Name: not_defined # Def: Lj928 prophage protein # Organism: L.johnsonii # Pathway: not_defined # 1 253 1 260 261 289 69.0 8e-77 MEIYGEEKDRASWAMHYAQVKANITQPQRTHKVDISGKSKVGKSYQYVYKYADLADIDKA VMAGIKKVKDKSGNVVFSYFFDISTDGNMVTVQTVLVDISGFAVKTNKITFQNNQAYDAQ KTASLISYAKRYSLSGAFGIAADDDDDARNQRTVQEPKLLTNQELEQYEVTYQGFKANLY DLYQEAKDGIKDAQAWLKNSHTPQDAQAIHQIAELFKQKEKNKKKEETTKQEMKKDPFED KKVNTTEKVPDDIESLF >gi|311092080|gb|AEKJ01000013.1| GENE 121 112126 - 113007 847 293 aa, chain - ## HITS:1 COG:no KEGG:LJ1450 NR:ns ## KEGG: LJ1450 # Name: not_defined # Def: Lj928 prophage replication protein # Organism: L.johnsonii # Pathway: not_defined # 3 291 8 296 297 287 55.0 4e-76 MEKNELITFENNEYKLEIEPAKVDFDGYQNLKDKITKIASDWNNYVVTKDSYNSDKKTRA ELNKLKSDLDSKRLEIVRKASDPINQFNDQLKDLAGMVKSAADHIGEGLKFFDDQARKAK HQQNLILLGTIAQEYGIALQKLEYDAKWDNKTTSRSAIEESARKQFDVILQQENARKEAI RVIQDKAENYTKPSMVANPYINMLAYKGLPDILKQMDSDHDYLLKQAQKQAETKRKQLEA VEQHGDKYINKNTGEVVDKIYTITLRLTGTKEQLTQLSKFIQDWGIKYEKVGK >gi|311092080|gb|AEKJ01000013.1| GENE 122 112994 - 113374 379 126 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872386|ref|ZP_07732456.1| ## NR: gi|312872386|ref|ZP_07732456.1| hypothetical protein HMPREF9218_0137 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0137 [Lactobacillus iners LEAF 2062A-h1] # 1 126 1 126 126 214 100.0 2e-54 MNNFIPQLNKKQLKILERRQRQEDLHKLSKQDPSALIIVIKNYPYIVSEYGNEYDDAFTS AWEFIKWRLDELKSLDKLAHEMGYSSDELLDFMEDLLEYDSEENLEQLLIDRYDAENMET WINGKK >gi|311092080|gb|AEKJ01000013.1| GENE 123 113460 - 113654 126 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872349|ref|ZP_07732419.1| ## NR: gi|312872349|ref|ZP_07732419.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] # 1 64 1 64 64 91 100.0 2e-17 MEIQEILDLIKNKRHALGLSQFDLSKQCGISRQNIIEIEKGKRIPKLTTLLQILRALNLK IKIK >gi|311092080|gb|AEKJ01000013.1| GENE 124 113854 - 114027 56 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCLNQIEENILDVFRICDFKLQGFGKQTGKYQHAKTDPWLNRCAQPHLFFIFPCLIS >gi|311092080|gb|AEKJ01000013.1| GENE 125 114186 - 114341 177 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325912787|ref|ZP_08175166.1| ## NR: gi|325912787|ref|ZP_08175166.1| hypothetical protein HMPREF0523_0434 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF0523_0434 [Lactobacillus iners UPII 60-B] # 1 51 1 51 51 74 96.0 2e-12 MFKAINKCINKIFDIDQKLTRKETTVITLAYALFLIGAIIALIILCSPIAE >gi|311092080|gb|AEKJ01000013.1| GENE 126 114354 - 114569 302 71 aa, chain - ## HITS:1 COG:no KEGG:FI9785_807 NR:ns ## KEGG: FI9785_807 # Name: ps107 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 68 1 68 69 67 51.0 2e-10 MQVVIPDEVIKKCVIQEYFNVGESALFLGISRSKFSELAKKYDLKPYVVDERVFYKKSNL NAFMEKHKAGK >gi|311092080|gb|AEKJ01000013.1| GENE 127 114575 - 115339 949 254 aa, chain - ## HITS:1 COG:lin0080_1 KEGG:ns NR:ns ## COG: lin0080_1 COG3617 # Protein_GI_number: 16799158 # Func_class: K Transcription # Function: Prophage antirepressor # Organism: Listeria innocua # 5 131 2 128 129 132 52.0 7e-31 MIDNNEIQIFNFENNEIRALNIDDKPYFVGKDVADILGYANPSKALADHVDEEDKLNNDS LLSLGQRGGWLINESGLYSLILSSKMPNAKKFKRWVTSEVLPAIVHKGVYMTDDVIEKVI KDPDFIIKLATELKEEKTKRLVAEQQVYELKPKATYYDLVLQNKSLLSVTQIAKDYGKSA KWLNEKLHELGMQYKQGSTWLLYQKYADKGYTQSTTHVIDECNAKLLTKWTQAGRLAIYQ ILKSKNILPLIERS >gi|311092080|gb|AEKJ01000013.1| GENE 128 115336 - 115725 212 129 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309806823|ref|ZP_07700812.1| ## NR: gi|309806823|ref|ZP_07700812.1| BRO family, N-terminal domain protein [Lactobacillus iners LactinV 03V1-b] BRO family, N-terminal domain protein [Lactobacillus iners LactinV 03V1-b] # 5 129 6 135 135 148 66.0 1e-34 MIDNNGIHTLRFENNKIKIRVINSDLYFSLEDVCKILNIKSIRRAKAKLDQQGIRIVFDI MSKDFISEPNLYKLISHSRRLANIDFVIWLASEIVPTFIQNKIAKELIKDIEVLRTNDLE KLRERNSLK >gi|311092080|gb|AEKJ01000013.1| GENE 129 115698 - 115907 75 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCEYRCYQSFQTVPFFSTLLRSSQLLCSETSARVERFVTLFVLRGGRCFAFPFVYNLCTL FLVLLPKII >gi|311092080|gb|AEKJ01000013.1| GENE 130 115859 - 116077 250 72 aa, chain - ## HITS:1 COG:no KEGG:LM5578_p11 NR:ns ## KEGG: LM5578_p11 # Name: not_defined # Def: phage transcriptional regulator, Cro/CI family # Organism: L.monocytogenes_08-5578 # Pathway: not_defined # 3 63 1 61 78 71 59.0 1e-11 MQITLKAARVNKGLTQREAAKYLKVNFQTISKYEIDSSKIPMKLLKDMCSLYKIPMNYII LGKSTKKSVQRL >gi|311092080|gb|AEKJ01000013.1| GENE 131 116522 - 117241 696 239 aa, chain + ## HITS:1 COG:SPy2125_1 KEGG:ns NR:ns ## COG: SPy2125_1 COG1396 # Protein_GI_number: 15675873 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 115 1 124 152 92 44.0 7e-19 MAKHAPQYYENLNYFNNQLNHLMSVHGTKQVDLVNALDIPKTTINGYVKGTSLPNMGNLQ KLADYFNTLKSDLDLRFKKDADEQIDISPVYNQLTDIRKHKVYSYAKQQLDEQNSNLNEH RSIYLVGSSAAGLPLDYGDLDAELIDLSNIPAKADKAIHIKGDSMEPKIANNSIIFYHEQ PTLEIGEIGIFEINGSAVTCKKYYVDYESKKIVLKSINPKYEPMYFNGEQVRILGKVVF >gi|311092080|gb|AEKJ01000013.1| GENE 132 117305 - 117805 697 166 aa, chain + ## HITS:1 COG:no KEGG:SERP0074 NR:ns ## KEGG: SERP0074 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 5 166 48 203 205 81 33.0 1e-14 MNKKVISILGSAVAVGLLTTACSDSSNNGGTRVENSKKSKTSAKFYKVGETVKVDNVVYT LKSVEKTDERNEFADTKPQNVIKVVYHVKNCGKEELSIGTDLNVYGPNNSKLKSYPINGQ TLDTIAPGKESDVVTGFGTDKLGDFELQFRPLLSINKAAKFKTNVK >gi|311092080|gb|AEKJ01000013.1| GENE 133 117950 - 119068 866 372 aa, chain + ## HITS:1 COG:L55605 KEGG:ns NR:ns ## COG: L55605 COG0582 # Protein_GI_number: 15673415 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 7 357 1 343 359 147 29.0 3e-35 MPRKTNLSIKEYTLKNGQKRYYFKISLGENSNGKRIVTTRRGFKTYAEADQVYNQLSRVK ADNFVKQNQITIDELHKIWFENYKNAVKESSAISESGIYKNHIKPFFGNQFIDKITVVDL QKWADKKATELVAFRRVIAVMNGLFEYGMRLNYVSSNLVKRVLIPKKTARKRRDTEKNVY TRKELETFLKVAKNFPIMKYTFFKILACTGLRRSECLALTWQDIDFKNNLLHVNKTLAYG LNHQVIVQTPKSKKSNRKIPISSSLRKALIEYQKQATHDKLFHTLNGKYLYLGTPNIWLK KIYDKNPDLKKITVHGFRHTFATLLISETNVKPKTVQMILGHKNIEITLNLYTHINQDNQ IEAQKVIEQLNF >gi|311092080|gb|AEKJ01000013.1| GENE 134 119257 - 120387 1562 376 aa, chain - ## HITS:1 COG:lin1509 KEGG:ns NR:ns ## COG: lin1509 COG0484 # Protein_GI_number: 16800577 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Listeria innocua # 1 372 1 370 376 358 52.0 1e-98 MSQRDYYDILGVDKTASDAEINKAYRKLAKKYHPDINHEQGAEEKYKEVNEAYEVLHDKQ KRAQYDQFGHAGVNGQSGFGGGTQYSDFSGFDGFGDIFGDLFGGTGRRHVDPTAPQRGQD LDYTLTIDFMDAIKGKKTNITYTRSEICSSCHGNGAEKGTHPITCSKCKGMGVINITRQT PFGIISQQASCDQCGGKGLIIKHPCNTCHGKGCIDKEQTLQVDIPAGIDNGQQIRLSGQG EAGKNGGTYGDLYIVFKVKPSAEFTRRGTTIYSEAKISFAQATLGDYIQVDTVHGKVSLK IPAGTQPNTRFKLRGEGVPRLNGKGNGDQEVLINIVIPKEINDKQKEALVDFVKAGGGSI TPQEKNFFERLKDKLS >gi|311092080|gb|AEKJ01000013.1| GENE 135 120456 - 122297 2307 613 aa, chain - ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 613 1 608 611 780 71.0 0 MSKVIGIDLGTTNSAVAVLEGKEPKIITNPEGNRTTPSVVAFKNGEIQVGEVAKRQAITN PNTISSIKRHMGEEGYKVKVDGKEYTPQEISAMILQYIKKFAEDYLGEPVKDAVITVPAY FNDAQRQATKDAGKIAGLNVQRIINEPTASSLAYGLDKDEKDEKILVYDLGGGTFDVSVL ELGDGVFQVLSTNGDTNLGGDDFDNAIIDWLIENFKKENGVDLSSDKMALQRLKDAAEKA KKDLSGISSTHISLPFISAGESGPLHLEADLSRAKFDELTHDLVARTKIPFDNALKDAGL SVSDIDKVILNGGSTRIPAVQEAVKQWAGKDPDHSINPDEAVALGAAVQGGVITGDVKDI VLLDVTPLSLGIETMGGVFTKLIDKNTTIPTSKSQIFSTAADNQPAVDVHVLQGERPMAA DNKTLGRFQLTDIPAAPRGVPQIQVTFDIDKNGIVNVSAKDMGTGKEQKITIKSSTGLSD EEIKRMQKEAEEHAEEDKKKKEEADLRNEVDQVIFSTNKTLEEVKGKLSDNDIKPVEDAL EALKKAQKDNDLAAMKEKKDALSKVAQDLAVKLYQQQNTQGQSGTKENGNDKGTDGNGNS TVDGDFHKVDPDK >gi|311092080|gb|AEKJ01000013.1| GENE 136 122314 - 122862 549 182 aa, chain - ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 33 180 26 172 174 113 52.0 2e-25 MKEHKDNSADSKKEKNNTKPKTSSNKEDVSKYTKKIQELELKNQELEDKYLRSEAEIQNA QNRYSKERAQLIKYESQSIAKDILPALDNLERALMVESDSDVTVQLKKGVQMTLDALIKA LSDHGISEIKADGEKFDPKLHQAVQTVDAVKDQEPDHVVQVLQKGYLYKDRTLRPAMVVV TK >gi|311092080|gb|AEKJ01000013.1| GENE 137 122874 - 123932 1221 352 aa, chain - ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 350 1 342 345 244 37.0 1e-64 MLTERQELILETIINDFTQTHEPVGSKTVMLQLPIKVSSATIRNEMVVLEDFGFLEKTHS SSGRVPSASGYRYYLDYLVDPIEISDSVYHQIIKQLDQPFHQVNEIIEEATKILSDLTNY TAFAAGPENIDIYITGFRIVPLSANRVMAILVTDDGNVQNQIYTLPHHTSGDEVEKAVAL INKQLIGKSLTDFNSGCLNQIAKELVSRGSATIFLDLLQDVIKDAASEQMYVNGQINLLN NSGINDLNKLRSLYQLIDQKQLMSDFIGFDTNQIINHNSHTNVRVHLGSEMPSKLLEDCS LLTVDYSVGKHGTGTIALLGPSNMPYSQMIGLLEYFRNELANKLLEYYGDFK >gi|311092080|gb|AEKJ01000013.1| GENE 138 124191 - 124934 564 247 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309803949|ref|ZP_07698032.1| ## NR: gi|309803949|ref|ZP_07698032.1| hypothetical protein HMPREF9214_0705 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9218_0150 [Lactobacillus iners LEAF 2062A-h1] chaperonin [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0438 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_1248 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9214_0705 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9218_0150 [Lactobacillus iners LEAF 2062A-h1] chaperonin [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0438 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_1248 [Lactobacillus iners UPII 60-B] # 1 247 1 247 247 396 100.0 1e-109 MIKAIKVTEKSVILGFPDGTAKEVPISDFDCSVHVGDEFEMYEMGDKKIFSKKAPKTSNL SDKVSDFTNKISNDEGVQGFIDNIVKYDVNNLFDKILLAIFSVLGLNIIYILYMSSQYKA SIYSMLSYLSNLSSAFAFQNFVVFCAIAALVIKFSELKDGNKWKKATFVFPAVTVVVTVL MHVVCHKIFSILGGKYSFSSLISTFTNYADVENSGKMLAVFLFIVLILTIVSIVTLFMNL SKTKNNK >gi|311092080|gb|AEKJ01000013.1| GENE 139 125270 - 125440 187 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAEDVNKLTDEEVGAIIQARYNSEMRQPENEEQRKLAEERRRKLKEVLKILQEQDN >gi|311092080|gb|AEKJ01000013.1| GENE 140 125524 - 125883 282 119 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309803963|ref|ZP_07698046.1| ## NR: gi|309803963|ref|ZP_07698046.1| hypothetical protein HMPREF9214_0703 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9212_1403 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9214_0703 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9212_1403 [Lactobacillus iners LactinV 03V1-b] # 1 119 1 119 119 230 100.0 3e-59 MPFPVCVGNKDKDGLKLFEKINGYLSGYYEPISQSESEMLARMVSSIQNGLLKSKLQQDI IVYRKEYYVKDLEKPINKFLSTSVTTRGALTGNPNIAIIVPKGTLGAYVEVLSWGKFKK Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:36:50 2011 Seq name: gi|311091976|gb|AEKJ01000014.1| Lactobacillus iners LEAF 2062A-h1 contig00031, whole genome shotgun sequence Length of sequence - 96471 bp Number of predicted genes - 103, with homology - 102 Number of transcription units - 37, operones - 20 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 30 - 65 5.1 1 1 Op 1 5/0.167 - CDS 144 - 4406 3530 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 2 1 Op 2 7/0.000 - CDS 4411 - 6156 1824 ## COG0442 Prolyl-tRNA synthetase 3 1 Op 3 12/0.000 - CDS 6128 - 7384 1255 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 4 1 Op 4 32/0.000 - CDS 7394 - 8191 843 ## COG0575 CDP-diglyceride synthetase 5 1 Op 5 19/0.000 - CDS 8209 - 8928 1024 ## COG0020 Undecaprenyl pyrophosphate synthase 6 1 Op 6 33/0.000 - CDS 8944 - 9501 683 ## COG0233 Ribosome recycling factor 7 1 Op 7 24/0.000 - CDS 9501 - 10226 954 ## COG0528 Uridylate kinase - Prom 10316 - 10375 8.1 - Term 10330 - 10371 3.5 8 2 Op 1 38/0.000 - CDS 10383 - 11258 597 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 9 2 Op 2 . - CDS 11291 - 12064 1160 ## PROTEIN SUPPORTED gi|238852608|ref|ZP_04643018.1| ribosomal protein S2 - Prom 12148 - 12207 8.7 10 3 Tu 1 . - CDS 12211 - 13239 1151 ## COG4123 Predicted O-methyltransferase - Prom 13489 - 13548 6.9 + Prom 13196 - 13255 7.8 11 4 Tu 1 . + CDS 13299 - 13913 479 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 13924 - 13978 12.2 - Term 13921 - 13956 2.0 12 5 Op 1 35/0.000 - CDS 13962 - 15758 225 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 13 5 Op 2 . - CDS 15748 - 17514 187 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Term 17532 - 17568 2.1 14 6 Op 1 . - CDS 17589 - 17804 301 ## COG3763 Uncharacterized protein conserved in bacteria 15 6 Op 2 . - CDS 17870 - 18115 196 ## LGAS_0794 hypothetical protein - Prom 18162 - 18221 8.4 + Prom 18160 - 18219 10.7 16 7 Tu 1 . + CDS 18239 - 18823 416 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 18829 - 18872 -0.9 - Term 18808 - 18866 10.5 17 8 Tu 1 . - CDS 18868 - 19650 790 ## LBUL_0280 hypothetical protein - Prom 19677 - 19736 13.8 - Term 19703 - 19773 12.4 18 9 Op 1 33/0.000 - CDS 19794 - 20171 585 ## PROTEIN SUPPORTED gi|227521152|ref|ZP_03951201.1| 50S ribosomal protein L19 - Prom 20201 - 20260 6.0 19 9 Op 2 30/0.000 - CDS 20263 - 20979 963 ## COG0336 tRNA-(guanine-N1)-methyltransferase 20 9 Op 3 12/0.000 - CDS 20969 - 21490 578 ## COG0806 RimM protein, required for 16S rRNA processing - Term 21499 - 21540 5.0 21 9 Op 4 23/0.000 - CDS 21546 - 21818 406 ## PROTEIN SUPPORTED gi|42519387|ref|NP_965317.1| 30S ribosomal protein S16 - Prom 21844 - 21903 7.6 22 9 Op 5 8/0.000 - CDS 21908 - 23335 1694 ## COG0541 Signal recognition particle GTPase 23 9 Op 6 . - CDS 23337 - 23678 202 ## COG2739 Uncharacterized protein conserved in bacteria - Prom 23705 - 23764 5.7 24 10 Op 1 . - CDS 23783 - 25462 1984 ## COG0497 ATPase involved in DNA repair 25 10 Op 2 3/0.167 - CDS 25475 - 26287 826 ## COG1189 Predicted rRNA methylase 26 10 Op 3 . - CDS 26287 - 27153 775 ## COG0142 Geranylgeranyl pyrophosphate synthase 27 10 Op 4 . - CDS 27156 - 27398 401 ## LGAS_0753 exodeoxyribonuclease VII small subunit 28 10 Op 5 7/0.000 - CDS 27391 - 28749 1358 ## COG1570 Exonuclease VII, large subunit 29 10 Op 6 4/0.167 - CDS 28739 - 29638 821 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 30 10 Op 7 10/0.000 - CDS 29645 - 30046 439 ## COG0781 Transcription termination factor 31 10 Op 8 4/0.167 - CDS 30046 - 30459 526 ## COG1302 Uncharacterized protein conserved in bacteria 32 10 Op 9 10/0.000 - CDS 30492 - 31052 720 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 31075 - 31134 6.2 33 10 Op 10 . - CDS 31136 - 32245 1303 ## COG0006 Xaa-Pro aminopeptidase - Term 32264 - 32301 2.3 34 11 Op 1 32/0.000 - CDS 32313 - 32612 438 ## PROTEIN SUPPORTED gi|116629403|ref|YP_814575.1| 50S ribosomal protein L27 35 11 Op 2 . - CDS 32629 - 32940 458 ## PROTEIN SUPPORTED gi|42519428|ref|NP_965358.1| 50S ribosomal protein L21 - Prom 33057 - 33116 7.5 - Term 33275 - 33317 -0.8 36 12 Tu 1 . - CDS 33350 - 33517 90 ## gi|309805498|ref|ZP_07699543.1| hypothetical protein HMPREF9213_0333 - Prom 33679 - 33738 6.3 37 13 Op 1 . - CDS 33742 - 34257 245 ## GALLO_2153 hypothetical protein 38 13 Op 2 45/0.000 - CDS 34266 - 35009 673 ## COG0842 ABC-type multidrug transport system, permease component 39 13 Op 3 . - CDS 34993 - 35862 548 ## COG1131 ABC-type multidrug transport system, ATPase component 40 13 Op 4 . - CDS 35864 - 36400 422 ## SGGBAA2069_c21520 hypothetical protein - Prom 36584 - 36643 5.9 41 14 Tu 1 . - CDS 36888 - 37028 115 ## gi|309806552|ref|ZP_07700553.1| hypothetical protein HMPREF9212_1413 - Prom 37255 - 37314 6.2 - Term 37296 - 37336 4.2 42 15 Op 1 . - CDS 37337 - 37531 183 ## SGO_0365 hypothetical protein 43 15 Op 2 . - CDS 37539 - 37685 68 ## gi|309804297|ref|ZP_07698374.1| hypothetical protein HMPREF9214_0226 - Prom 37781 - 37840 8.2 - Term 37763 - 37806 -0.4 44 16 Op 1 . - CDS 37842 - 38978 1258 ## COG0294 Dihydropteroate synthase and related enzymes 45 16 Op 2 . - CDS 38978 - 39577 638 ## COG0127 Xanthosine triphosphate pyrophosphatase 46 16 Op 3 2/0.167 - CDS 39570 - 40790 1060 ## COG0285 Folylpolyglutamate synthase 47 16 Op 4 2/0.167 - CDS 40838 - 41398 689 ## COG0302 GTP cyclohydrolase I 48 16 Op 5 17/0.000 - CDS 41379 - 41897 259 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 49 16 Op 6 . - CDS 41891 - 42226 271 ## COG1539 Dihydroneopterin aldolase - Prom 42283 - 42342 6.8 - Term 42307 - 42351 5.8 50 17 Op 1 . - CDS 42368 - 43513 1043 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 51 17 Op 2 . - CDS 43535 - 44209 661 ## COG0775 Nucleoside phosphorylase 52 17 Op 3 . - CDS 44236 - 44487 297 ## gi|312872443|ref|ZP_07732512.1| conserved hypothetical protein 53 17 Op 4 . - CDS 44480 - 45043 758 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 54 17 Op 5 . - CDS 45049 - 45267 354 ## LJ0980b cold shock protein 55 17 Op 6 . - CDS 45267 - 48053 3420 ## COG0060 Isoleucyl-tRNA synthetase - Prom 48116 - 48175 3.5 - Term 48065 - 48098 1.2 56 18 Tu 1 . - CDS 48267 - 49094 952 ## LGAS_1197 cell division initiation protein - Prom 49139 - 49198 6.6 57 19 Op 1 . - CDS 49200 - 50624 1481 ## COG4690 Dipeptidase 58 19 Op 2 10/0.000 - CDS 50651 - 51664 838 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 59 19 Op 3 6/0.000 - CDS 51672 - 55229 3213 ## COG1196 Chromosome segregation ATPases 60 19 Op 4 . - CDS 55252 - 55929 844 ## COG0571 dsRNA-specific ribonuclease - Prom 55949 - 56008 10.7 - Term 55992 - 56037 8.4 61 20 Tu 1 . - CDS 56064 - 57815 1987 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 57852 - 57911 9.6 - Term 58223 - 58269 7.4 62 21 Op 1 49/0.000 - CDS 58270 - 59199 1301 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 63 21 Op 2 6/0.000 - CDS 59214 - 60176 1076 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 64 21 Op 3 44/0.000 - CDS 60178 - 61146 753 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 65 21 Op 4 . - CDS 61156 - 62160 586 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 62223 - 62282 10.4 66 22 Op 1 3/0.167 - CDS 62308 - 62550 324 ## COG0236 Acyl carrier protein 67 22 Op 2 . - CDS 62600 - 63601 1154 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 68 22 Op 3 4/0.167 - CDS 63622 - 65643 2116 ## COG1200 RecG-like helicase 69 22 Op 4 9/0.000 - CDS 65645 - 67270 1981 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 70 22 Op 5 . - CDS 67333 - 67692 505 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 67738 - 67797 7.0 + Prom 67628 - 67687 10.0 71 23 Tu 1 . + CDS 67868 - 68053 282 ## PROTEIN SUPPORTED gi|42519405|ref|NP_965335.1| 50S ribosomal protein L28 + Term 68072 - 68127 7.0 - Term 68178 - 68230 12.5 72 24 Op 1 17/0.000 - CDS 68235 - 68894 653 ## COG0765 ABC-type amino acid transport system, permease component 73 24 Op 2 31/0.000 - CDS 68904 - 69542 518 ## COG0765 ABC-type amino acid transport system, permease component 74 24 Op 3 16/0.000 - CDS 69539 - 70360 957 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 75 24 Op 4 . - CDS 70369 - 71109 289 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 71139 - 71198 6.3 76 25 Tu 1 . - CDS 71282 - 72370 1111 ## COG1363 Cellulase M and related proteins - Prom 72548 - 72607 6.4 + Prom 72416 - 72475 11.2 77 26 Tu 1 . + CDS 72537 - 73736 997 ## COG0477 Permeases of the major facilitator superfamily + Term 73872 - 73910 7.0 + Prom 73841 - 73900 6.3 78 27 Tu 1 . + CDS 73934 - 75244 1063 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 75259 - 75296 6.6 - Term 75247 - 75284 6.6 79 28 Op 1 45/0.000 - CDS 75297 - 76097 888 ## COG0842 ABC-type multidrug transport system, permease component 80 28 Op 2 3/0.167 - CDS 76084 - 77013 291 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 77155 - 77214 8.3 - Term 77192 - 77233 6.1 81 29 Tu 1 . - CDS 77245 - 78693 1741 ## COG0477 Permeases of the major facilitator superfamily - Prom 78731 - 78790 7.0 - Term 78743 - 78785 4.0 82 30 Op 1 13/0.000 - CDS 78803 - 79564 173 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 83 30 Op 2 9/0.000 - CDS 79557 - 80456 991 ## COG4120 ABC-type uncharacterized transport system, permease component 84 30 Op 3 . - CDS 80456 - 81451 1205 ## COG2984 ABC-type uncharacterized transport system, periplasmic component - Prom 81533 - 81592 8.2 + Prom 81753 - 81812 6.7 85 31 Tu 1 . + CDS 81846 - 83063 1091 ## SAG1837 prophage LambdaSa2, lysin, putative - Term 83060 - 83101 7.6 86 32 Op 1 . - CDS 83102 - 84721 1599 ## COG0366 Glycosidases 87 32 Op 2 34/0.000 - CDS 84776 - 86155 1134 ## COG1122 ABC-type cobalt transport system, ATPase component 88 32 Op 3 . - CDS 86149 - 86838 463 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 89 32 Op 4 . - CDS 86838 - 87446 587 ## FMG_1400 hypothetical protein - Prom 87473 - 87532 11.2 90 33 Tu 1 . - CDS 87572 - 87727 191 ## gi|309805534|ref|ZP_07699579.1| conserved hypothetical protein - Prom 87767 - 87826 2.9 91 34 Op 1 . - CDS 87901 - 88056 178 ## 92 34 Op 2 . - CDS 88043 - 88390 336 ## gi|259501501|ref|ZP_05744403.1| arsenate reductase - Prom 88523 - 88582 5.5 - Term 88527 - 88569 -0.3 93 35 Tu 1 . - CDS 88670 - 88867 250 ## gi|315653345|ref|ZP_07906267.1| minor capsid protein - Prom 88929 - 88988 3.4 - Term 89954 - 90004 3.7 94 36 Op 1 7/0.000 - CDS 90184 - 91395 1363 ## COG0282 Acetate kinase 95 36 Op 2 . - CDS 91406 - 92407 1137 ## COG0827 Adenine-specific DNA methylase 96 36 Op 3 . - CDS 92498 - 92671 108 ## gi|259501495|ref|ZP_05744397.1| conserved hypothetical protein 97 36 Op 4 . - CDS 92655 - 93146 393 ## FI9785_1299 hypothetical protein 98 36 Op 5 . - CDS 93133 - 93351 74 ## gi|259501493|ref|ZP_05744395.1| hypothetical protein HMPREF0520_1003 99 36 Op 6 . - CDS 93341 - 93772 308 ## LGAS_1272 hypothetical protein 100 36 Op 7 6/0.000 - CDS 93756 - 94082 364 ## COG4537 Competence protein ComGC 101 36 Op 8 24/0.000 - CDS 94097 - 95092 1109 ## COG1459 Type II secretory pathway, component PulF 102 36 Op 9 . - CDS 95064 - 96038 1079 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB - Prom 96079 - 96138 10.9 - Term 96109 - 96143 3.2 103 37 Tu 1 . - CDS 96160 - 96471 382 ## gi|315653335|ref|ZP_07906257.1| conserved hypothetical protein Predicted protein(s) >gi|311091976|gb|AEKJ01000014.1| GENE 1 144 - 4406 3530 1420 aa, chain - ## HITS:1 COG:BS_polC KEGG:ns NR:ns ## COG: BS_polC COG2176 # Protein_GI_number: 16078721 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus subtilis # 8 1420 11 1437 1437 1439 51.0 0 MEDKNKLFLRLLEQIQIIDNIAQNSDLKKGEIENVDVYAKERKWVIHVFLPKVLEFDTYI MLYKALHKTFDPFVNVDLVVRCQLDDNSELNNYWEFGIEHVEKLSASVKEFLIHTKPCYL DANWQITCQNNFVQSMFTSEVLDALASEFNKYGFKDLRFNINLEDNTKEDIKQLEQQQLE HENAMQKMYEQNPEQSPEYNPEHNMEITKIKDLEDGNKDIFVEGHVFNVESRELKSGKVI LTGEITDYTDSISFKKFLSSKDKLADLEDIKPGVWVQIQGNVLDDTFQHEIVLNIKSIKL IKHSGRQETYEGKQKRVELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAF PEAYVAGKKNGLKIIYGYEANMINDQALLVLNPANMDYRGQEYVIFDVETTGLSSVYDTI IEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSITDEMVQNADDENIVIRQFQEFYQ DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV VLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLA INKVGLKNMYKLVSLASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYD ATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAH YIDKKDAIYRKILLSAQKANRGKNYELPDLHFYTTQEMLDAFSFLDPKIAEEIVIKNTNM IADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS NGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQ FFEKGEYGSGYDLPDKKCPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVA HSYIRVMFGPDNSYRAGTIGTVADKIAYGYVKHYEDENELKLRNAELDRLSQGASGVKRT TGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHDNILKFDILGHDDPT MIRMLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEFGTKFVRGM LEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDVP PEVAFSTMESVRHGKGISDENMAILSKNKNIPDWYIQSCLKIKYMFPKAHATAYILMALR IAWFKVYYPVIYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTV LEIANECLERGININMVDIEKSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQ PFLSKEDLSIRGKVSQTIMEYFENNGVLDGLPDQNQLSLF >gi|311091976|gb|AEKJ01000014.1| GENE 2 4411 - 6156 1824 581 aa, chain - ## HITS:1 COG:BS_proS KEGG:ns NR:ns ## COG: BS_proS COG0442 # Protein_GI_number: 16078720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Bacillus subtilis # 16 579 1 564 564 606 53.0 1e-173 MIYIVSLLNDYLEENMRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPL AYLVLRKAEKIIEEEMENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESL LGPTHEETFTEIIGKNIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAA TREQLDKQFDDQKHAYKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPASIGEDVIATNE TGTYSANLEMARSIDTFSPEKEELKPLEKVATPDCATIEQLSEFLHVPNTRIVKSILYIV DDKKVLVLIRGDKQVNEVKLQNALDADSEPRVATNEELLSVVKATKGGVGPVNAAYADYI IADETVKGLYNVVVGANESDYQYINANIDRDFKVNEFADLRTANAGEPDPVDHLPLKFTT SIEVGHIFKLGTYYTNSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNSIFW PKEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFSDKYDVLYDDRNERPGVKFNDADLIGAP IRIIVGRRVSEQIVEVKKSTEQESVEMSLDSLTEYISKELR >gi|311091976|gb|AEKJ01000014.1| GENE 3 6128 - 7384 1255 418 aa, chain - ## HITS:1 COG:lin1355 KEGG:ns NR:ns ## COG: lin1355 COG0750 # Protein_GI_number: 16800423 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Listeria innocua # 1 416 1 419 420 286 38.0 4e-77 MKSILIFLVIFGILVFVHEFGHFFVGKKCGILVREFSIGMGPKLFQVMKKKTTYTIRWLP IGGYVRFAGPDDIAKIDPGATVVLQFNDNGEVVRIDNSGSQMPISGIPVQVIESDLVNRL IIRGYKNGDENENITYSVNHDATIIEKNGSELIIAPEDTQFQNAKVLKKIASNVAGPLMN IILGFIVFIGLSISGPGAPTTIINKTIDNSPAQRIGLKNGDQVKEIEHQKVSQLEDISKI IAEYKGKKVEVVVLRNNSYRKFKIKPMKVVDNGQTLYQLGFICKLDNNLFSKLSHGCKTS LRTMGLIFNALSGLIRHFSLDKLSGPVGIYSQTRKMSDLGFAYVVTFLAMISINLGIVNL LPIPGLDGGKLLLNVVELVTGKPLSPEKEELVNIIGFVFLLILIIAVTGNDIYRFFIK >gi|311091976|gb|AEKJ01000014.1| GENE 4 7394 - 8191 843 265 aa, chain - ## HITS:1 COG:lin1353 KEGG:ns NR:ns ## COG: lin1353 COG0575 # Protein_GI_number: 16800421 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Listeria innocua # 1 265 1 262 262 216 50.0 4e-56 MKQRIITALVALIFFIPVLLLGGYWIDVMACLLACCAISEIFIMKKQILISINFLISLLA TLTLTLPDKFFNFLPVFLGKIQLFCILNMLLLTITVLSKNKTSFDDVGTYVLGSIYVGAG FHYLAAIRNINDGYGLAILGFALVVVWASDIGAYVFGRKYGKRKLWPVISPNKTWEGSIG GIICAIVCTTIYVLIVPTGRNQLLLIGLSIVLSVVGQIGDLVESAIKRFYGVKDSGKILP GHGGILDRFDSLLFVLPVVAYIGIM >gi|311091976|gb|AEKJ01000014.1| GENE 5 8209 - 8928 1024 239 aa, chain - ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 10 237 26 250 252 271 56.0 8e-73 MKQENKRLDHLAIIMDGNGRWAQERHLPRIIGHRSGMNKVKEIALVANELGVRVLTLYAF STENWGRPRDEVNYLMKLPINFFDKFMPELQKNNIRVNIMGFNDKLPLATAEIIKKAEQE TADNDGMILNFAFNYGSRQEMTAAISKIALDIQNKKIEVDSINEQLISDYLMTSKFGDYA DPDLLIRTSGEERLSNFMLWQLAYSEFYFTKTYWPDFTTDEFKKIVEEYQHRDRRFGKI >gi|311091976|gb|AEKJ01000014.1| GENE 6 8944 - 9501 683 185 aa, chain - ## HITS:1 COG:SP0945 KEGG:ns NR:ns ## COG: SP0945 COG0233 # Protein_GI_number: 15900824 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Streptococcus pneumoniae TIGR4 # 1 182 1 182 185 196 61.0 2e-50 MSNVIIEKAKANMSKSISVFEKELGGIRAGVANASLLDGIKVEYYGVPTPLTQMSSITIP EARVLMITPFDKTTLNNIEHAILASDLGITPANDGSVVRIVIPQLTGERRIEIAKKVGKL AEQAKIAIRNIRREGIDALKKQQKDGEITEDDLHKFEKDIQKITDDATKDVDALADKKSK EITKA >gi|311091976|gb|AEKJ01000014.1| GENE 7 9501 - 10226 954 241 aa, chain - ## HITS:1 COG:L70624 KEGG:ns NR:ns ## COG: L70624 COG0528 # Protein_GI_number: 15673992 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Lactococcus lactis # 1 238 1 238 238 334 68.0 1e-91 MSQLKYKRVILKVSGEALAGSEGRGINPEVIAHLAMEVKKIHDMGVQIGIVCGGGNMWRG ETGANLGMERAQADYMGMLATIMNGLALQDALENLGVPTRVQTSIEMRQIAEPYIRRKAI RHLEKGRVVIFGGGTGNPYFSTDTTAALRAAEINADVILMAKNGVDGVYSADPKIYPEAV KFDELTQLDIIAKDLKVMDRTASSLSMDNNIPLIVFNVNEAGNIKKVIEGENIGTVIKGG K >gi|311091976|gb|AEKJ01000014.1| GENE 8 10383 - 11258 597 291 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 286 1 275 283 234 46 1e-60 MAKITAAQVKELRERTGAGMMDVKKALVKADGDMDKATDILRESGAAKAAKKSGRIAAEG LAAFDVEGNNAVLVEINSETDFVSSNDKFVKFVDDVTKAILAAKPADLEAAMNVPLGEGT IASAETELTAVIGEKITLRRFTILTKKDNEVFGAYKHNNGAIIAVTILDGDNAEAAKNIA MHVAAINPEYLDKSQVPAEVLEHQTDVFTKETEKEGKPSKIIPKIVEGRMNKYLAEICLV DQPYVKDSDMTVAEYVKSVKSEVKNFVRYEVGEGIEKKQEDFAAEVREQMR >gi|311091976|gb|AEKJ01000014.1| GENE 9 11291 - 12064 1160 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238852608|ref|ZP_04643018.1| ribosomal protein S2 [Lactobacillus gasseri 202-4] # 1 256 1 258 261 451 85 1e-126 MTVVTMKQLLEAGVHFGHQTRRWDPKMAPYIFTQRNGIYIIDLQKTIKMLDDAYNFMKDV ATDGGVFLFVGTKKQAQDAVKEEAIRAGQYFINERWLGGTLTNWSTIQSRVQRLKQLKKM SEDGTFELLPKKEVAVLTKELDKLQRFLGGIEDMPRIPDVMFVVDPKKEKIAVHEANILG IPVVAMVDTNTDPEPVDVVIPSNDDAIRAIRLIAGAMADAVIEGKQGQDDEKSVEAEFTE KSEADDEKSIEEIADED >gi|311091976|gb|AEKJ01000014.1| GENE 10 12211 - 13239 1151 342 aa, chain - ## HITS:1 COG:SP1536 KEGG:ns NR:ns ## COG: SP1536 COG4123 # Protein_GI_number: 15901380 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 246 5 247 249 185 38.0 1e-46 MEILKSNERIDYMYSDHLKVIQRKDAFSFSLDTLLLAYFAKEKIHDRDKVVDLCCGNGAA TLYMSYFNLAHYDAVEIQPEIASQAERSVSLNKLENRIEVHCMNALDTPNVLGKDKFDVV TVNPPYFKVSDGHRINPNQQKAIARHEILINLEQVIIVASQLLKMKGKLFIVHRPERLAE IIHYCLSNHMGVKNIQPFAPQKDHKTNLVVVEAVNNAPTDGLVLNNPIIVHNSDSSFTDE IENIIHENKAASSKTENKKYYFYCLQCADGSFYGGFTDNLKKRIEAHNAGKGAKYTKIRR PVKLLYFEEFDDKRAALKREYWFKHHDRKWKENFLTEHNVKF >gi|311091976|gb|AEKJ01000014.1| GENE 11 13299 - 13913 479 204 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 194 1 196 249 193 46.0 2e-49 MFYKFLRSTVRIIFWIINGHLHIHNSNYIPEENYILAAPHRTWWEPFLFAIAAKNTEFVV IAKKELFKNPIYKFLLKKCNAFPVDRANPGPSSIKIPVKELKAGQRSFMIFPSGTRHSDQ LKSGVFIIAKLANKPIVPVIYQGPLTFKGILKRQNVEIRFGKPIYLDRKIKINNENTSIL YAKLENAWQELDNEQNPNFKYIPK >gi|311091976|gb|AEKJ01000014.1| GENE 12 13962 - 15758 225 598 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 360 583 132 355 398 91 29 2e-17 MTNNKQESIWAHSIPVKEQLKIFVRLLHFVKPYKLEMILALVGAFLVSVINMLLPFVLQY FIDKYLIKSHPALKLILFFALLFAMGTIMKAIIQFIYEYFYAVGSEKTLENVRRCLYKKM HSLGMRYFDQTPAGSIVSRITNDTMTLSRFLSVWASAVIGIFSLVTSFVAMYCTNKPASL IVLTFLPILLFIIWFYSRNSSRLYRKFREYLSDINTNLNEAIEGVSLIQQFKQEKRMMSL FEKKNIALMKTRQRMILLNALLLSPLTSLLYSLALIASLLYFGYPLRETFIPAGVVYAFS QYIATFFNPIAMVMDTMTLFQDGIVAGKRIFALLDNPELEPKQSANAKDDNIIFNGKVEF KHVSFSYDGKNEILHDISFSIDPGKTLGIVGHTGSGKSSIINVMLRFYEFYQGQILIDGV DIKNYSKSELCKKIGLVLQEPFMFYGDIASNIRLYNKDITDEELVNAAKNVQADGFIQKM ADGYKTRVLEGGEGLSQGQKQLISFARTLVTNPKILVLDEATANVDTETETLIQQGLDKL RQGRTTLAIAHRLSTIANADKIIVLDKGRIIESGTHESLLAKKGYYYDLYTLQTNSEN >gi|311091976|gb|AEKJ01000014.1| GENE 13 15748 - 17514 187 588 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 353 562 34 249 329 76 29 4e-13 MGIYQKLGWFFKQHKKRYIFGIAMLMLTSLANLVPPRILGLMADQLNKKQITWFSYFKYT GLILVAALSLYVLRLLWRSLIWGGATILEKELRAKLFAHFMKMDRTFFQNNRTGDLMAHA TNDVMAVQEVAGDGILTVVDAITLGGCTAVAMILFVDLRLTLIALLPMPLLAIFARYFGD KLYVAYDKSQAAFSKLNNKTQESVSGIKVLKTFGQDKQDINSFNKMVDETICINKQVFKW QSMFDPLGSLLIGLTYVIAIIYGSILVNNQSITVGQLVSFVAYISNMVWPMFAIGYLFNI LERGSASYDRIEKLLVQKPLITDKNADSLLNIQDLHSDLEFNIDSFAYPDDVDHNILKNI HFTLKPGQTLGLVGKVGAGKTTLIKLLLREYDNYAGNIKFGGENIQKIPLKELLEAISYV PQKNFLFSTTIAGNIAFSNPDATMDEIQAAAKKAGLHDDIMAMPEQYETIVGEKGVSLSG GQRQRMSIARALLKDSRVLILDDALSAVDAKTEGIILHNLKAEMHDKTALIASHKLSSVM DADLILVLKHGQIVEQGVHDELLKKKGWYAKMWERQELQSKVGENIDE >gi|311091976|gb|AEKJ01000014.1| GENE 14 17589 - 17804 301 71 aa, chain - ## HITS:1 COG:BH2350 KEGG:ns NR:ns ## COG: BH2350 COG3763 # Protein_GI_number: 15614913 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 70 1 70 72 57 45.0 5e-09 MNYIWIILIIVAFLVGLAAGFYGARLYMKKYFKENPPISEDMIAAMMSQMGQKPSAKKLN QVMNMMKHSQR >gi|311091976|gb|AEKJ01000014.1| GENE 15 17870 - 18115 196 81 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0794 NR:ns ## KEGG: LGAS_0794 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 5 81 11 87 87 69 66.0 5e-11 MNEADEKLVKRINELYHLSKQRKLTELEIKEQKKLRLQFLANFRAGFKQQIEDIVFVDEK GNEVTSEKAKAVQRKKGLRKD >gi|311091976|gb|AEKJ01000014.1| GENE 16 18239 - 18823 416 194 aa, chain + ## HITS:1 COG:BH2356 KEGG:ns NR:ns ## COG: BH2356 COG1974 # Protein_GI_number: 15614919 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Bacillus halodurans # 9 192 7 206 207 100 33.0 2e-21 MELTNDKNKQLAILSFIYNYISKNNFPPTVREICDGIGLSSTATVHGHLLRLEKKGWIVR NAAKPRAIEITQLGNKKLNLDSKAIPLVKNIRSKKPYFAKSDIIDQFPMLPNLQNYDNQL LIWQYPDTSLNELQIMNNDMLIIHLKNQEININDIIVYANSFDKIKLAKLDHHFKSKHIK ILGTVVGIYRNLTN >gi|311091976|gb|AEKJ01000014.1| GENE 17 18868 - 19650 790 260 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0280 NR:ns ## KEGG: LBUL_0280 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 51 259 80 284 285 151 41.0 3e-35 MNKKKLFVGTLMLALMLSGCTKQDDRSAINVKAHNNSSTKVNKKVVEANNKKENSRLIFF NKKIKSVTSGILLPQDDGLKQGSSNLNMRFENNPDQSVVYYSVGESKQKFNDEILKKELP YAILTMRSNMTNEKMDKLIGYRDAKDDAGLRQIKLNDSITAAVDAGAGQQYLHFVKGNWS IIVHASSIMNQSAEKPALKLLNLIEKYGLPKTTGKSTIYITAGKSKGSLNNVFKWQLNDK YYQLDTHSLTTALKMLSSLE >gi|311091976|gb|AEKJ01000014.1| GENE 18 19794 - 20171 585 125 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227521152|ref|ZP_03951201.1| 50S ribosomal protein L19 [Lactobacillus gasseri JV-V03] # 1 125 1 125 125 229 90 3e-59 MNAVEGEIFMDPLIAELTKEQLRTDIPEFRAGDTVRVHVRIVEGTHERIQMFEGVVIKKK GAGISATYTVRKIASGVGVERTFPVNDPRVAEVEVLRHGRVRRAKLYYLRDRHGKAARIA EKRRG >gi|311091976|gb|AEKJ01000014.1| GENE 19 20263 - 20979 963 238 aa, chain - ## HITS:1 COG:SP0779 KEGG:ns NR:ns ## COG: SP0779 COG0336 # Protein_GI_number: 15900673 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 235 1 235 239 263 54.0 2e-70 MKINVLTLFPDMFAPVQQSMLGRGLEDKKWNLNLINFRDFTSDIHHHVDDSPYGGGAGMV LQIMPIKKALDTIENKGKVIITAPQGKTFNQEMAREWAQEDNLTFICGHYEGFDYRIYDF VDEIVSIGDFVLTGGELPTMSMIDATVRLLPGVLGNAASPVDESFSHGLLEYPQYTRPAD FEGKKVPEVLMSGNHQKIAEWRLKESLRMTYKKRPDMLAYRVLTAQEQKLLEEIKRES >gi|311091976|gb|AEKJ01000014.1| GENE 20 20969 - 21490 578 173 aa, chain - ## HITS:1 COG:BS_ylqE KEGG:ns NR:ns ## COG: BS_ylqE COG0806 # Protein_GI_number: 16078665 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Bacillus subtilis # 1 172 1 174 174 122 42.0 3e-28 MTEYYFVGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYISVGDQKVKMTVETARFHKQ AYLVKFLQINDIDEANRIVNKNLYVSDEDQTDLPKGSYYIHQLIGLDVFDYETKTKIGIL TDIEMPGANDIWEITPSKGKIFWIPNISSVVKQVDLVNKKIEVILLEGLRDEN >gi|311091976|gb|AEKJ01000014.1| GENE 21 21546 - 21818 406 90 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519387|ref|NP_965317.1| 30S ribosomal protein S16 [Lactobacillus johnsonii NCC 533] # 1 90 1 90 90 160 83 2e-38 MSVKIRMRRMGSKRKPFYRLVVADSRMPRDGRFIEEVGFYNPLSDTDSVKLDEEKVFAWL QKGAQPSDTVRSLLSKAGLMKKYHEAKYNK >gi|311091976|gb|AEKJ01000014.1| GENE 22 21908 - 23335 1694 475 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 455 1 464 523 531 61.0 1e-150 MAFENLSEKLQKALRKLTGKGKISENDINQASREIRLALLEADVNFKVVKKFIKTIKAEA LGKEVQESLNPGQQIIKIVNDELTKMMGSDTASIIEAKHIPTIIMMVGLQGTGKTTTVGK LANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLNVPVYSENNTDVVAIVENGLMQAD RNHNDYVIIDTAGRLEIDDQLMDELKNIVDVAHPENIILVADAMTGQVAATVAEGFNSKL KLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMASRILGMGDM LSLIEKAQQDFDAKEAEKVAQKMRENTFDFNDFVDQMDQMQKMGPLDQIIKMIPGMANNP ALKNFKVPDKQIAHTKAIVYSMTPAERENPDLLNPSRRRRIAGGCGLSVVEVNHMIKQFK QAKDMMQKVTSGNFKGLSNLPGMDTPMAKMAMKSMSKNFKKNKQKRLKNIKRFHS >gi|311091976|gb|AEKJ01000014.1| GENE 23 23337 - 23678 202 113 aa, chain - ## HITS:1 COG:SP1288 KEGG:ns NR:ns ## COG: SP1288 COG2739 # Protein_GI_number: 15901148 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 3 108 2 105 110 72 42.0 2e-13 MNELQKNELYSNLYGFYGKLLTKRQQDYFEDYYYSDLSLGEIADNHGVSRQAVFDNLKRS CKLLNNFETKLRMKSDYDFFEQSLQKCIDSLNVNDYVATQSVIEVMLSRLKGE >gi|311091976|gb|AEKJ01000014.1| GENE 24 23783 - 25462 1984 559 aa, chain - ## HITS:1 COG:SP1202 KEGG:ns NR:ns ## COG: SP1202 COG0497 # Protein_GI_number: 15901065 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Streptococcus pneumoniae TIGR4 # 1 553 1 550 555 377 40.0 1e-104 MLVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSRAQIDMIRSGES KAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTINVLK NLSQYLVDIHGQRDMQILMDQDLHINLLDNYANNDFKESLCQYQKIYAKWQEIKQRLSAI RKNAQEIAQKHDILEYQLNELKAANLTDEKEDERVDDEYRQLTNYQKIMTAANYFMQLYE DEQGLSTLLDDGQKTASELAGYSVQFSNFEKTFNDGVYALEDAHEELTSIIDNLEFDSEH YAYLTERINLLNTLKKKYGPTLKDVFIFYDNIQREINQFDNQYFDEEKLNKDLQSLQAKL MTYANELTQARKNNAKILEKKIKQELSSLYMDKARFVIKIEPCNTFNKFGLDKVAFMIAT NPGDDLHPLVRIVSGGEQSRLLLALKAIFSESEPVGTMIFDEIDTGVSGRVAAAIGKKMH KIGLAKQVIAITHSPQVAAASDHHFAISKIVKDGETFTKALSLNKDETVITIAKMMAGKD ITEISKQNALELITKLHNE >gi|311091976|gb|AEKJ01000014.1| GENE 25 25475 - 26287 826 270 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 266 3 268 274 290 56.0 2e-78 MEKKRADVLLFEQGLFYSRTEAQRAIMAGLISDHNHQRIDKSGEKFPINEVFYVKKDSRK YVSRGGYKLEKALNVFNIDLTDKVCLDIGASTGGFTDVALQNHAKLVYALDVGYNQLSWK LRDNPQVIVMEKQNFRYSTPADFTEGLPDFAMTDVSFISLDLIMKPMFEILKNNCDAVCL IKPQFEAGPENVGKNGIVHDHRVHCNVIEHTILEAQKIGFNVINLDYSPIKGGKGNIEFL IHLRKDLNHLGENLWQGDIEKLVLAAVADL >gi|311091976|gb|AEKJ01000014.1| GENE 26 26287 - 27153 775 288 aa, chain - ## HITS:1 COG:slr0739 KEGG:ns NR:ns ## COG: slr0739 COG0142 # Protein_GI_number: 16329282 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Synechocystis # 30 270 38 281 302 171 40.0 2e-42 MKLTDFSELYLPQINSFLKEQLECTINDHKFSEIMSYSVLAGGKRLRPLLFLATLEILSH PISEKEIKIACGIELIHTYSLIHDDLPAMDNDDYRRGKLTSHKKWGEAEAILAGDALLPL GIQWIAEASNSYELIKVITRAIGPNGMAGGQYMDIDSTNNLSYKRNETFIDKMEFLKTGC LIVASVQMAAKYANSSDKVQMNLLHFAEAFGRAYQIYDDIVDIMQTSVQAGKKTHKDADN GKNNTLTMLGLEKSQAELSDLIARGKVAIKDMDNQLLSDFFDLYRKAL >gi|311091976|gb|AEKJ01000014.1| GENE 27 27156 - 27398 401 80 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0753 NR:ns ## KEGG: LGAS_0753 # Name: not_defined # Def: exodeoxyribonuclease VII small subunit # Organism: L.gasseri # Pathway: Mismatch repair [PATH:lga03430] # 1 80 1 80 81 77 71.0 2e-13 MSDQKNTFEEQLKQLQDIVTKLEGGNVPLEDALNQFQEGVKLSRELEQKLNDAEKIVAKL IDKDGNVKQLNPEDSNSPEE >gi|311091976|gb|AEKJ01000014.1| GENE 28 27391 - 28749 1358 452 aa, chain - ## HITS:1 COG:lin1398 KEGG:ns NR:ns ## COG: lin1398 COG1570 # Protein_GI_number: 16800466 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Listeria innocua # 6 418 5 418 450 318 40.0 1e-86 METSPKYLTVTDLNFYLSKKFKNDPYLHKVFLQGEVSNFRLRMNSTQYFSLKDEKSKINA VMYKSFFEKVKFKLVEGMKVYVSGYIDLYSPQGSYQFYVHTIEPAGLGALFEQLRQLREK LDKEGLFADSHKKKIPKFPDKIAVVTSASGAVIHDIMVTANRRFPHVEIDLFPTIVQGKD AAASIIASLQQIAASQDKYDVVIIGRGGGSLEDLWPFNEEMVVRQIYSMTMPVISSVGHE TDTTLSDLVADKRAATPTAAAEYATPELSAITLQIIELRTHLYAAIRSIINSDKILFNRT KNSVFLREPQRFYDEKMQTLDLLEQKLEQVANNYLLNVKTKYQLVNQSLLSTNPHQIIKH HYQELIFKTQNLNKSMCYLINNNKNNFYNLSQKLDDNSPLKAISRGYVYTANEDGKTVTS VHQICENDILNLNFKDGLVKTRVLKIKGENHE >gi|311091976|gb|AEKJ01000014.1| GENE 29 28739 - 29638 821 299 aa, chain - ## HITS:1 COG:SPy1502 KEGG:ns NR:ns ## COG: SPy1502 COG0190 # Protein_GI_number: 15675405 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pyogenes M1 GAS # 16 286 1 273 284 260 49.0 2e-69 MRSAVPTSFFKGDLYLTLILDGKEPAKKIIDELTLEVEHLKAKNILPTFCVIEVGEDPAS KIYLRLKRKLAKKIGINEQTIKFPGDIRQDELINKIKELNADPHVDAIMVQLPIPEHINT RLVLEAIDPAKDADGFTPYNQGRMWQGQVNIIPATVRSIMTILDYYQLNVEGKNALIIGR SIIVGKPVASQLLARNATVTIAHSHTRNLQELTLLNDIIISDVGRAHLITKNMVKPGSIL IDVGMNRENGKLMGDIEYDDCLPIAEAITPVPGGVGPLTVANLMKQVIILTKLRHNYGN >gi|311091976|gb|AEKJ01000014.1| GENE 30 29645 - 30046 439 133 aa, chain - ## HITS:1 COG:SP0433 KEGG:ns NR:ns ## COG: SP0433 COG0781 # Protein_GI_number: 15900351 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Streptococcus pneumoniae TIGR4 # 21 131 39 136 140 72 34.0 3e-13 MTQHDVRVIAMQALYLADQVHEHEDVDAIKKKTMDVLDIKEFPDYAYEILQGVMKEKSSI DANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSSAKSK GFINGILANFIDK >gi|311091976|gb|AEKJ01000014.1| GENE 31 30046 - 30459 526 137 aa, chain - ## HITS:1 COG:BS_yqhY KEGG:ns NR:ns ## COG: BS_yqhY COG1302 # Protein_GI_number: 16079489 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 119 2 120 135 80 38.0 8e-16 MPESSTILLSNNENGDETRVDLGVLEVILGIAAKKVDGVNEMRGSLKSSIDKIFGRSNQG KGVSLTNRNGNLIADVYAYFDYGVNVPKVALELQKQLGLQLEQMTNLKLVETNIHVVGLI SEDDKNNTKVEYKEVKN >gi|311091976|gb|AEKJ01000014.1| GENE 32 30492 - 31052 720 186 aa, chain - ## HITS:1 COG:lin1392 KEGG:ns NR:ns ## COG: lin1392 COG0231 # Protein_GI_number: 16800460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Listeria innocua # 3 184 1 185 185 220 61.0 1e-57 MTMISVNDFKNGLTIQYNNDIWRIVEFQHVKPGKGGAFVRSKLKSLKTGAVQDYTFRSTA KVEDADVQTKTMQYLYNDGTSFVFMDMATYEQLEVPETQAEAEAKFLKENMVVNIIMHDG KTLGIEVPNTVDLVVKETAPATSTGSGKPATMETGLVVTVPMFINVGDVLTINTAGNGSY VSRANK >gi|311091976|gb|AEKJ01000014.1| GENE 33 31136 - 32245 1303 369 aa, chain - ## HITS:1 COG:BH2800 KEGG:ns NR:ns ## COG: BH2800 COG0006 # Protein_GI_number: 15615363 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Bacillus halodurans # 14 368 3 353 355 265 42.0 2e-70 MDAKSKLLTLINARIEKVTKLIKEKNADALIIMNQANYRYLTNFTGEEAELILCANGDRI LLSDSRFAGQIKKQAPGEMKVIMKRKNSVSEITEQLRHLSLKKVLVEGEAISAIDYQNLV NSNSDIEFEMALELVEVARNVKDELELDALKQAIAISSQSFTEILPMLQPGVTEREIGAK LDYLFKLNGGDGPSFDTIIASGYRSSWAHGVASDKKLQKGELVVIDFGSFYHGYTADITR TVALGQVPAELQKIYKIVYEAQKQGIATAIAGKTGADVDKAARDYICEQGYGQYFGHGIG HGIGLEIHELCMPALPFSKEVLKDNMAITVEPGIYLPDFGGVRIEDDILINGNSPETMSK LPKEELLVL >gi|311091976|gb|AEKJ01000014.1| GENE 34 32313 - 32612 438 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116629403|ref|YP_814575.1| 50S ribosomal protein L27 [Lactobacillus gasseri ATCC 33323] # 1 99 5 103 103 173 84 3e-42 MMIDNLVQLKLFAHHKGGGSTTNGRNSAGRRLGTKRADGQQVTAGAIIYRQRGTKIHPGK NVGRGGDDTLFALTDGVVKFERLGKDRKQVSVYSAEEAK >gi|311091976|gb|AEKJ01000014.1| GENE 35 32629 - 32940 458 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519428|ref|NP_965358.1| 50S ribosomal protein L21 [Lactobacillus johnsonii NCC 533] # 1 103 1 103 103 181 85 2e-44 MYAIIKTGGKQYKVTEGASIFVEKLDVEEGTVVTFDEVILVNDGESTKIGTPVVKGAKVT AKVEKQGKEKKVVTFKYKPKKHSHSKYGHRQPYTKVIIESIEA >gi|311091976|gb|AEKJ01000014.1| GENE 36 33350 - 33517 90 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805498|ref|ZP_07699543.1| ## NR: gi|309805498|ref|ZP_07699543.1| hypothetical protein HMPREF9213_0333 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9219_0373 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0402 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0289 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9216_0321 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0522_0299 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0160 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0775 [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9213_0333 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9216_0321 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9217_0289 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_0402 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0373 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF0522_0299 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0160 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0775 [Lactobacillus iners SPIN 1401G] # 1 55 1 55 55 87 100.0 3e-16 MVEIAYMLVTGLSFTIAIHFVLLGIPITIIGLLYWKYYVDKIEKLLRDKKSSLSN >gi|311091976|gb|AEKJ01000014.1| GENE 37 33742 - 34257 245 171 aa, chain - ## HITS:1 COG:no KEGG:GALLO_2153 NR:ns ## KEGG: GALLO_2153 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus # Pathway: not_defined # 1 170 1 170 171 201 59.0 1e-50 MKIKEYFGSISQLEKKLSAWIDLPISLRVRSTGTRNITFLFESFSEEEIISFFKDTIQQP EHAIVGYRQDDIYGDILGKCDYQDVLYFEGIGDKVYAYADNLTLSLKNKLYEIEEFSKLY VRISKSFIVNILVVEKIYPSLNGKFIIELTDGQNLTVSRKYKKQFLEYLED >gi|311091976|gb|AEKJ01000014.1| GENE 38 34266 - 35009 673 247 aa, chain - ## HITS:1 COG:BS_yvfS KEGG:ns NR:ns ## COG: BS_yvfS COG0842 # Protein_GI_number: 16080461 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Bacillus subtilis # 14 246 11 244 245 111 27.0 1e-24 MNQVSSLFFLIWLDIKRVFRDTKYVLFIIVLPVIFYIIYTAIFPENANVNGVPWSEYCLI SMIAFGIMGNAINLLGTKIADERKKQWYTYLKVSPVNSTYYVISHVFSYLLISVAFTFLM FVVAYLYKGINLGVLEMINIGITLNIGSIVFLIMALLIGRLDSLSQPIGTITYLVLSFLG GLWMPVAAMPKFLSQIATFLPSYNYARLGWGLLENKGIDVKSVAILFIYIICFLGIYILL QRKEQAN >gi|311091976|gb|AEKJ01000014.1| GENE 39 34993 - 35862 548 289 aa, chain - ## HITS:1 COG:BS_yvfR KEGG:ns NR:ns ## COG: BS_yvfR COG1131 # Protein_GI_number: 16080462 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus subtilis # 1 226 2 234 301 146 35.0 4e-35 MNNVFEISNITKSFKNKQILKGVDLIVNRGDIIGLLGLNGEGKSTLIKIILGILSQDYGE VKRNFDIKSDVGVMLQEISMPEKMKVYEWLDMVKCFSTNSKSVESVLDSVNLRTVRNKYC DSLSGGQQRRVQFATAIINNPKVLILDEPTVGMDVVSKKAFWETLNTFSFSKDLTIILIS HDMEEVAEFCNRVLILSKGLLVSDSKMTDIQDRIEKNSSYSIDKSQITQEQLEVVTKFSF EETDSEIKFTYQMIDEVVSVGKIPISIIKKNRSNLRKYFMEVLENEPSE >gi|311091976|gb|AEKJ01000014.1| GENE 40 35864 - 36400 422 178 aa, chain - ## HITS:1 COG:no KEGG:SGGBAA2069_c21520 NR:ns ## KEGG: SGGBAA2069_c21520 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus_gallolyticus # Pathway: not_defined # 2 177 143 323 327 136 40.0 3e-31 MSCMTISNQIKKSNDLPRDFVDFSKLKSSSNSGVLNYNDVDFFYSYIKLALLDIPNFSSF YFLQNFSNHINKSLKKLRDSGIYYAFCFCKYHREYVEFFLVISINQTVPNCCDYIIDELG SIYEAYDYYENQNTGVQDFKEDLCAIYLTDTFIESNVPEFTSVQRGFINKIILMLGGG >gi|311091976|gb|AEKJ01000014.1| GENE 41 36888 - 37028 115 46 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309806552|ref|ZP_07700553.1| ## NR: gi|309806552|ref|ZP_07700553.1| hypothetical protein HMPREF9212_1413 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9216_0326 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9212_1413 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9216_0326 [Lactobacillus iners LEAF 2053A-b] # 1 36 1 36 46 67 94.0 4e-10 MEQLEISEFQTQGFEVTKLDTDDFLSSDQMNWSVTLCCCPCCCCCG >gi|311091976|gb|AEKJ01000014.1| GENE 42 37337 - 37531 183 64 aa, chain - ## HITS:1 COG:no KEGG:SGO_0365 NR:ns ## KEGG: SGO_0365 # Name: not_defined # Def: hypothetical protein # Organism: S.gordonii # Pathway: not_defined # 1 64 1 64 64 89 90.0 3e-17 MFIFKSNMDKDFDQTCEYILKLKRAELFFHGIKKQDKTKARLYHATLEYYYANHKKERYM RILK >gi|311091976|gb|AEKJ01000014.1| GENE 43 37539 - 37685 68 48 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804297|ref|ZP_07698374.1| ## NR: gi|309804297|ref|ZP_07698374.1| hypothetical protein HMPREF9214_0226 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0339 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1411 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9219_0379 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0408 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9216_0328 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9214_0226 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0339 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1411 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9216_0328 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9218_0408 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0379 [Lactobacillus iners LEAF 3008A-a] # 1 48 1 48 48 69 100.0 8e-11 MIGYKKKTSKQIGKNINYIACLATVVGKISYEDKIDMSILMQKMVDVI >gi|311091976|gb|AEKJ01000014.1| GENE 44 37842 - 38978 1258 378 aa, chain - ## HITS:1 COG:L0176 KEGG:ns NR:ns ## COG: L0176 COG0294 # Protein_GI_number: 15673137 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Lactococcus lactis # 41 373 13 356 357 187 33.0 4e-47 MEIKEIKYDKINIEGLPLQIIKRDILQRQEIVLAWQGIECVENKIIDFLNHFDIPLFRCE NTIQFLFPITALKILAAKSKILWPDDEKLALSIDAIIKSHCIIWKAGRFTFDITDKPLVY GILNVTPDSFYDGGQYYAPEDMKKHIANMVDSGADIIEVGGQTTKPGGYVEVKPEDEIMR TIPAIKFIHDKYPNIAIAIDTYKLPVMQAAIEAGVDIINDVRAFDSYQKRALMAKSNVGL VTMHSSREHEYDNLSDEMIKFFKDNLKTLIDAGIDLNRIILDQGIGYAKVADGYQDYTMM RNLDQLNKFNRPIMVAISRKGFGKKLFNLNKEDRLPVTLIAESAMFLRGGRVIRAHDIAE TYQLVNMLDIINQSYWFR >gi|311091976|gb|AEKJ01000014.1| GENE 45 38978 - 39577 638 199 aa, chain - ## HITS:1 COG:BS_ysnA KEGG:ns NR:ns ## COG: BS_ysnA COG0127 # Protein_GI_number: 16079888 # Func_class: F Nucleotide transport and metabolism # Function: Xanthosine triphosphate pyrophosphatase # Organism: Bacillus subtilis # 9 194 8 194 198 69 29.0 5e-12 MISNEMNFVIASNNIKKAKELENILYHLGYKSIIYSELMPYIQFPNEQNNSLEQNACTKA EFISNYLNNELVVADDTGLYLDAFPQEYGVSTKRQLMKECKNGNFNQYLLNKVKEKDRKM TLRSVVALAQNGVIIAKGAGKMRGKIALEELGNMSTGFDKIVIPDGSTKTLAQIDWNTRF LYLHRAIALRNLLKKRNFS >gi|311091976|gb|AEKJ01000014.1| GENE 46 39570 - 40790 1060 406 aa, chain - ## HITS:1 COG:CAC2398 KEGG:ns NR:ns ## COG: CAC2398 COG0285 # Protein_GI_number: 15895664 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Clostridium acetobutylicum # 19 403 32 426 431 190 33.0 5e-48 MLAGDHNHVVFLRNIKKRLGSPEQAFKTIHIAGTNGKGSTGMMIKGVLEHAGYKVGYFNS PALIDDREQISINNILISRNDFVATYYEILNKLSPDESAKISVFEWWTLIMLVYFANKKV DWAVIECGLGGTDDATNIINAPEYAIFTHIALDHIHILGDTVEKIAKAKSGIIKYGTKAT IIAPLQQKAVVNIIKKKCSQAQVPLILSDEIAKIKVHNSKINIISTDFTLESSFSLLGEY QRENLKTVIALVKQLMREKVLISLMPLKQMLETIKIPARCEKIASLPDVLIDGAHNPDAA YNLAQTIISLRHGRRVIMILGFLKDKNYQKMIQIYQEISHDFILTEPDNLQRKLPVAILA QNFKNHVMQAVNVRSALKIARQNAKPDDLIVVTGSFYLVKDLISDD >gi|311091976|gb|AEKJ01000014.1| GENE 47 40838 - 41398 689 186 aa, chain - ## HITS:1 COG:L0175_2 KEGG:ns NR:ns ## COG: L0175_2 COG0302 # Protein_GI_number: 15673136 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Lactococcus lactis # 3 182 26 205 209 191 52.0 7e-49 MNQQKIEHAVRELLVAVGEDPDRSGLVETPKRVAKMYQEIFSSLNHRPEDFANYKKFHVD SNPEMVSINHIPIYSMCEHHLLPFFGYADIAYIPNNNMVLGLSKIPRLVEFVSKKPTMQE KITTDIVKQLAKFIDPKGIAVAIKARHLCMEMRGINKYGQYTYTSDYAGLFNEDDRLKQE FLNQRG >gi|311091976|gb|AEKJ01000014.1| GENE 48 41379 - 41897 259 172 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 1 149 117 262 278 104 42 5e-32 KMKSKAYLSVGSNIGDRLNNIVQAVNLLRSNKHIYNVTVSSVYETEPVGNVEQQNFYNIG IKIETDLDPFLLLEALHDIEQKLHRKRLVRWGPRTIDLDIIDYENYQIKTDILTLPHKER DNRKFVLEPLLEISKDDPAYHNLLQEKIKCTKDTNWIKVVQQSEVFNESTKN >gi|311091976|gb|AEKJ01000014.1| GENE 49 41891 - 42226 271 111 aa, chain - ## HITS:1 COG:DR0169 KEGG:ns NR:ns ## COG: DR0169 COG1539 # Protein_GI_number: 15805206 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Deinococcus radiodurans # 3 110 12 117 118 65 35.0 2e-11 MVYTHNGVFAEEKILGQRLEIDCEISYPIEQKVIHDNLSETISYVDIYELIVKYAQEQSF NLIETLANKLADKILSEDSMIISVQLKVRKYGVPMAGAFDDIEIEVFKKQK >gi|311091976|gb|AEKJ01000014.1| GENE 50 42368 - 43513 1043 381 aa, chain - ## HITS:1 COG:BS_yrvO KEGG:ns NR:ns ## COG: BS_yrvO COG1104 # Protein_GI_number: 16079805 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Bacillus subtilis # 3 346 2 344 346 344 52.0 2e-94 MKKNIYLDNAATTPVSPSVAARINDEMLDDFGNASSQHYFGRKARAAVEVARKIIADSIN AKANEIVFTSGGTESNNTAIYGTAKLRSHLGKKIITTKVEHPSVLNPMKDLESKGYNIVY LDVDQTGHISLEQLKDELTDDTILVSIMSVNNEVGSIMPIEEIGQLVKGTNALFHVDDVQ GFGNIDIDVQKSNIDLMSTSAHKINGPKFLGFLYEKEGINLPPLLLGGEQELKRRPGTEN VPAISGFGVAVKESNIDKKEQQKKYQNLQNIIINKLKHDHVDFEVNGSISGSVSHHVLNL WLKGIDTALAITNLDLAGFSVSGGSACTAGSLHPSHVLAAMYGESSPRLRESIRVSFSRF TSEDDVTSFAAELADMCKRLV >gi|311091976|gb|AEKJ01000014.1| GENE 51 43535 - 44209 661 224 aa, chain - ## HITS:1 COG:SA1427 KEGG:ns NR:ns ## COG: SA1427 COG0775 # Protein_GI_number: 15927179 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Staphylococcus aureus N315 # 16 218 21 221 228 124 38.0 2e-28 MVPMAEEAEYYHTNFQFNEIKKYGITEYSHGFIGNNEVFIGLSGIGKVNAAMNITSLLVN EKIDLIFITGSAGALQTNIHQYDLVCPDAFRYFDVHNTMAGDYVEGQIPQEPAEYDLNSM LRDDFIKYLQAKKIRYFSGLAVTGDSFIATFETKNGILKNFPDALCVEMEGAAFAQVASK FGVPLVALRAISDNAANEAAVDFDIFVKNVAKKAASIICDYLKN >gi|311091976|gb|AEKJ01000014.1| GENE 52 44236 - 44487 297 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872443|ref|ZP_07732512.1| ## NR: gi|312872443|ref|ZP_07732512.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 1 65 1 65 83 89 100.0 9e-17 MTEKRSEYIKEKRKKALFGFFKKKDRHAADNSDLKDNISNDEVIDRPKLTKEEKSKRLKR FLNRAIIIELILLALVLLYLLKF >gi|311091976|gb|AEKJ01000014.1| GENE 53 44480 - 45043 758 187 aa, chain - ## HITS:1 COG:SP0989 KEGG:ns NR:ns ## COG: SP0989 COG0494 # Protein_GI_number: 15900864 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 176 1 177 181 139 42.0 3e-33 MDIREEEISRKRIFSGKLIDLDVETISLPNGKTALREIVNHPDASATIAINNQNKMLLVR QWREAIKQETLEIPAGLIDDTDASPLDAMKRELNEEGGYRAEYWEKISEFYSSCGFCNEK LYLFYCDTLTKVENKRPLDDDEFLTQVWYSLDELKQLLAQGKIVDSKTVMAINLWENMVL TGNRNND >gi|311091976|gb|AEKJ01000014.1| GENE 54 45049 - 45267 354 72 aa, chain - ## HITS:1 COG:no KEGG:LJ0980b NR:ns ## KEGG: LJ0980b # Name: not_defined # Def: cold shock protein # Organism: L.johnsonii # Pathway: not_defined # 1 69 1 69 69 107 81.0 2e-22 MRTGIVKQFDSRSPYGFIEDDLTGASYFVFYKSIKESGYKRLEVGQRVRYQLAQGKKGLQ CINVYVENNERG >gi|311091976|gb|AEKJ01000014.1| GENE 55 45267 - 48053 3420 928 aa, chain - ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 928 1 932 932 1174 59.0 0 MKIKDTLNLGNTKFKMRGNLPVREAEWQKQWEDNDLYEQRLKLNEGHPRFDMHDGPPFAN GNIHMGHALNKISKDIIVRYKNMRGFYAPFVPGWDTHGLPIEQQLAKKGVKRKELNMAEY RQMCHDYALSQIEKQRQDFKRLGVMADWNHPYITFQPQFEAQEIRVFGEMYNKGYIYKGK KPVYWSWSSESTLAEAEVEYKDVEANSIFVAFKLIDGKDLLDTDNTYLIIWTTTPWTIPA NEAICVNPKFDYSLVQVNDKKFVVATGLLEKVAQEIGWDEYNVVKSFKGSEMEYMKAKHP IYDKESLVIEGFHVTLDDGTGLVHTAPGFGADDFNVGLKYNLPIFSPVDGQGNYTDEVPE LAGMFYQDVDKLMLEKLKACGALLKLKVFTHSYPHDWRTKKPVIFRATTQWFASIEPFRQ QILDEIDKVNFLPDWGKIRLYNMIKDRGDWVISRQRAWGVPLPIFYAEDGTPIVTPETIE HIAKIFEKEGSMAWFTKTAKELLPDGFTSSHSPNGEFTKEKDILDVWFDSGSSHTAVMAQ RPELSYPADLYLEGSDQYRGWFNSSLITSVAISGQAPYRQILSQGFVLDDKGHKMSKSLG NVIAPNDVIKQMGAEIIRLWVAGADTTSDVAVSQDILKQAAESYRKVRNTMRFMLANTSD FDPKKNTVPYDEMSGVDQYMEVKLNKLLAECLEAYDHYDFTSVYKNVFSFLSNDLSSFYL DFAKDVLYIESEDGQARRSMQTVIYDFLVKLAKLLTPILPHTMEEIWSYLKEPEKFVQLT NMPEVQHFANENVILSNWKRFMTLRSDVLKALEDARNKKVIGKSFEAHVILYPKADTAEL LESLNADVRQILIVSDLTIENETKMPQNVEEFATAGIVVEHAQGDVCPRCRRTTDDFCKN GSLSNLCSRCADIVLKNYPQVSEEGLEE >gi|311091976|gb|AEKJ01000014.1| GENE 56 48267 - 49094 952 275 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1197 NR:ns ## KEGG: LGAS_1197 # Name: not_defined # Def: cell division initiation protein # Organism: L.gasseri # Pathway: not_defined # 3 274 1 263 263 150 42.0 4e-35 MAMTITPMEIHDKVFPIVKNGYSAEAVDEFLDQIIDDYADVLDRNVDLKNENYKLKKQLR DASSDNTQIRQHMVEVQEQARQIVNQARVTAQQIIDDAKDKSDSMLADTQKQLVQQQNML EQYNTLMNDYELLKTEVANFIHDTKAKLNEQVKELDDKDWQIYLDKHYGRTRLYPADGSQ PIKTDDSDNLIDEEGLIKPEDIDKYQEYIPAENFDEDIDNNTDTEVNSDNEKEDTHKILE GDNPTVVETVEDENSNSDSLSRPKIIFPDDYKDHN >gi|311091976|gb|AEKJ01000014.1| GENE 57 49200 - 50624 1481 474 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 471 6 473 474 384 42.0 1e-106 MKKLSACTTILVGKKATIDGSTMIARNDDTYSPITPQKFIIQKAEKNNKGRIIKSYLNNF QMELPENAQRVPAVPNVDYKKLGYYDESGINECNVAMSCTESTYGNERTLAFDPLVVDGL DEDCMQTVVLPYIKSARNGVEYLGELITKYGSAAGNSVLFGDKDEVWYMEIVTGHHWVAQ RIPDDCYAIAANRVSIENVDFTNADYFMWSDGIREFVDAHHLNPDHHGWNFRHIFGTYTE QDRHYNTSRVWYGQKYFNPDIEQDPQDGDLPFIRKANKLITQEDIEFVLGSHYQNTPYDP FGHGTDEEKHMYRPIGLNRTQNAHILQIRNDVDADKAGIMWLCIGGPTFTPFIPFFANMS DTDASFNNTSLTYNQNDAWWYYKSLASLVESHYPQFVQLNIKYLEELNRYYRGRIEEIIA NSEGLAGNKLTEYLTAENQKTVKHTKKLSDELFGKMFIESIKMSKLTFSMDKNL >gi|311091976|gb|AEKJ01000014.1| GENE 58 50651 - 51664 838 337 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 1 337 1 324 336 327 50 1e-88 MGLFNKLKEKLLGKTEENKDSEITKKDNDIQATYDRGLKKTSNSLGEKLNSFLAQFRTID EDFFDDLEDLLIEADVGYETAEMLTDELRNEAKLKNVKDSKLLKNVIVEKLVELYEQNNT KDSKLILKTGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQL KAWGQRVDVQVISGNTNADPSSVVYEGLECAVKNHIDYLLVDTAGRLQNKVNLMNELDKI NRTIHRKIPDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAI RNEMSLPVKLVGLGEKAEDLAEFDAEKFAIGLFHELI >gi|311091976|gb|AEKJ01000014.1| GENE 59 51672 - 55229 3213 1185 aa, chain - ## HITS:1 COG:BH2487 KEGG:ns NR:ns ## COG: BH2487 COG1196 # Protein_GI_number: 15615050 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Bacillus halodurans # 1 1183 1 1183 1188 595 34.0 1e-169 MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN MRDIIFAGSEFRGPLNKAEVCLIFDNHDRQLHLDSDKVAIMRRILRSGDSEYFINNQSVR LKDIRTLFVDSGLSQNSLAIISQGKVDQILNSQAEDRRYIFEEAAGVLHFKQQKLVALKK LDETNNNLIRINDLVKELKARVEPLCEESSLAKQYKFEKKQLDRKLKQLLALEIESLVLE KKEIGSKLSDSKTNLDRIDEEVSRSQKDLETKKKKSKLLHEQKDDHQSALLHITQEIAQL STELQIQKQSFEYDAATAKEFEQQHQELIVRKNKLQQILINQQNDLAQVTNSAQQLADFK KKLGSKLNTTPNELNRNLELVRSDYIQTLQDQTTNNNQQVFLKNEIQRLTRAEDSQVVSL SEQVQQSSVKLHQLLQDKKNLMQQHEELAAKNNQKTKEYNLISQHGQKLQEQINHLQNIL SQKQAQIDGLKKLQQRHDGYYTGVKFILNNMSKFAGAIGVVGDLLNFSPKLEAALITSLG SGVQSVVTIDKNSAKDAVELLKKYRAGRVTFLPLGGLRKNKIPDSTLRVIKSMDKVLGVA AELVTPTIDKDISEVINYLLGNVIIVEDMQTALQVQSKTGGYYRIVTLDGDIISPGGSIT GGIRNQRTNSPLQINLQIAELEDKVVVDLQKMKSLKQELSQFNDKIHQFDITIQEYQRQL LTLESEFNKSNLDYQGQKKENDRLNQLLLLQTNAQKQKQNDIEKIKRQLVEQKTLQKVIA DKLVSQKSKMESLKREITQFDNDRQHLQAELADNSSRLAVANNKCANLQEQIKQNQEQAL LVEKQLQSLAIKMHDLDAKKNNTQNEENLNQKIAMKKASQEKLTADLTELNTQLGKIDAE LNQLESRASRDYELRKNLADNHKKLSIDITKLSDSIRHKLDILSQDYDISYEAALDMVEG EHNLQKQQDLAKDVKLHKMSIAEIGPVNLNAIDEYQEVKTRYDFLSEQQNDLLSARKNIE VSMSKLDNEVKKRFEDTFLKIAQKFKTIFPIMFGGGHAQLMMVDPKNILETGIEIVAQPP GKKLQSLSLLSGGERALTAITLLFAMLEVSPVPFCILDEVEAALDEANVVRFADFLNKYE LKTQFIVITHRRGTMKKVNNLYGVVMQESGVSQVLSVSLTDDQNR >gi|311091976|gb|AEKJ01000014.1| GENE 60 55252 - 55929 844 225 aa, chain - ## HITS:1 COG:SP1248 KEGG:ns NR:ns ## COG: SP1248 COG0571 # Protein_GI_number: 15901109 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Streptococcus pneumoniae TIGR4 # 10 223 8 225 232 194 50.0 1e-49 MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK VIDSDEAQPKFTVQLIVAGENISQGIGRSKKAAEQVAASVALKNI >gi|311091976|gb|AEKJ01000014.1| GENE 61 56064 - 57815 1987 583 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 564 1 576 600 374 39.0 1e-103 MKKFRLLSSLALLSGVALTMTACGGKSDNANVSTKAFKSAVPKKEVKKGGTLRQALTTNT PFTGVFLNELADTQDDSDVMSPANESLFYFDDSYGYNDEGPATIKMDVKKKTVTVKIKKG VKWSDGKQVCAKDYEYAYEIIANKDTQTSRYTESLQALKGLTEYHDGKAKTISGIEMPDG EKGLTVVLHYKEMKPGMRQSGNGFIWECAVPYHYLKDVPFKKLKESDKVRKNPLFFGPYK FSKIVRGQSATFVRNPYYWRGKPNFDKVVIQVLNPNNSSQALKSHKFDIIGVRNSQWKEV KNTKGVNFVGKVGLGYSYVGFKVGKWSAKKGKNVMNPKAKMNNKALRQAIAYGMNIAPVY KRYTNGLTFQIPTLIPKQFGAFYNGSVKPYTQDFKKANKLLDDAGYKKKGKWRVQPNGKP LVIHFAAMSGSAIQEPIIQNYLKQWHKLGLNVKLAGGRLMEMNSFYDKVMHDDPSVDMFM AAWGLSSEPSPNDLYNEKAPYNFTRFVTKKNSELLKAIDSTKAFNKKYRIAKFHEWQKYM ADELYVLPVANNWSITAVNSKISGYDASPSASCKFWMNCGFIK >gi|311091976|gb|AEKJ01000014.1| GENE 62 58270 - 59199 1301 309 aa, chain - ## HITS:1 COG:L90358 KEGG:ns NR:ns ## COG: L90358 COG1173 # Protein_GI_number: 15673820 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Lactococcus lactis # 24 306 11 291 294 251 45.0 2e-66 MFSKKKKADVQATANNSTPDLPPSAIKVVAREIVKDKISLLAFLVIALIFATTFIGSFAF SILHVDVTDTNIADAFYSWGQMGHILGTDDGGRDILNLLIVGGRNSIMIGLSVTFITEVI GLVVGVISGYYGGFIDAIIMRIIDFIQILPQLPIIIVLVSVIPNYNSVILVALISLFGWT GTTRYYRSFVLSQSGREYVLASKTSGSSDWQIMFREVLPNISSMIIIDVVLGVAGNIGIE TALSFIGYGLPNSTPSLGTLIGFAQDPVNVTTRLWLWMPATVVLLALSLSFNYVGRALQR AGDARQREN >gi|311091976|gb|AEKJ01000014.1| GENE 63 59214 - 60176 1076 320 aa, chain - ## HITS:1 COG:BH3638 KEGG:ns NR:ns ## COG: BH3638 COG0601 # Protein_GI_number: 15616200 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 320 1 322 322 342 52.0 5e-94 MWKTVLRRILIMIPQLIVLSLLVFVLAKMMPGDPFSGQINPNQDPKTIAHLKQELGLNDA PWIQYCRWLGNVIHGDFGTSYIQHVAVTSLIWDRAVNTFWLSIVTVILSYSISIPLGIIA GHHQDEWQDQSIQIFNYITFAIPGFVSLILGLWLFGFTLGWFPIAGSVGTDCDSSVFAYI WSRFYHLILPAMLCAILSTTGTVQYLRTGIVDNKVEDYVRTARSKGVPEKVVFNKHILRN SLLPIAAFMGNTITGLLAGSVILETIFSYPGMGKLFLDSISQRDYTTLTALILLFGVLTL VGNLLSDIIMSIVDPRIRIK >gi|311091976|gb|AEKJ01000014.1| GENE 64 60178 - 61146 753 322 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 2 269 8 275 329 294 52 1e-78 MAEEIIQIKDLKVHYPIRSGFWNRITDYVRAVDGVSLSIKEGETYGLIGESGSGKSTIGK VIVGVEAATEGQILYKGKDITKSRNRKKLNYNKDVQMIFQDSMSSLNPRKRIEDIIAEPI RNFENLTTDEERKRVQELLDIVGMPSDAIYKFPHEFSGGQRQRIGVARAVATKPRLIVAD EPTSALDLSVQAQVLNFMKQIQQQYNIAYLFISHDLGVVKHMSEDIAIMHRGRFVEIGKS TDIYNNPQHIYTKRLLSAIPIVDVNRREEHKRMRQRVEKEFQDNRDKWYDKDGRVYPLQQ ISDRHFVALPKDAINSELEGEK >gi|311091976|gb|AEKJ01000014.1| GENE 65 61156 - 62160 586 334 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 8 325 11 328 329 230 41 2e-59 MEKQRDVLLDIEHLHTAYRLQGKFYDAADDINLTLKRNEILAIVGESGCGKSTIASSIIG LYDHKNTRVTGDIMYNELNLSDLNESLFNKIRGNNIGMIFQDPLASLNPLMRVGDQVAET LYYHTKLNEKARYARVIELFTQVGMPEPEKMYRMYPHELSGGLRQRVVIAIAIACKPEII IADEPTTALDVTIQAQILDLLKDIQKEMQAGIILITHDLGVVAETADQVAVMYAGQVVEK ADVKTIFEHPLHPYTRSLLNSMPQADDEKEQLHVIQGTVPSLKNMPREGDRFASRIPWIP ASEHEENPVIHEVEPGHFVRCTCWKNFHFQDQSK >gi|311091976|gb|AEKJ01000014.1| GENE 66 62308 - 62550 324 80 aa, chain - ## HITS:1 COG:lin1920 KEGG:ns NR:ns ## COG: lin1920 COG0236 # Protein_GI_number: 16800986 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 75 3 73 77 64 54.0 4e-11 MSEEEIFNKIANIIEDRFEINRSNITLNLNFKNDLDADSIDFVEFVMDLEEAFGADISDE DAEKLKTVGEAVKYIYQRQN >gi|311091976|gb|AEKJ01000014.1| GENE 67 62600 - 63601 1154 333 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 1 329 1 327 330 306 49.0 3e-83 MKKIAIDAMGGEHAPQAIVEAVLSLVKQLPQTKFILFGDKNKIENCLIGVKCERIEIVNT TEVIDDSDEPVKAIKQKGDSSMVVAAKYVKDGRADALFSMGNTGALLACGIFIIGRIKGV KRPALMPTLPSSSNKLGFNMIDVGANAQSKPEYLIQWAKMAELYAEKIRKIAHPRIALLN NGAEFDKGDALHQEVYKKLLKEDLNFVGNIEGNELFSDKADIVVTDGFCGNIALKTLEGT SQVIVHEMKQSLLNNGIIVKLGALLAKHGLQSLKSHFDVARYGGAVLIGLNAPVVKTHGR SDKRPVYYTLLQIDKMLDEHLIDEFKKYFLNNN >gi|311091976|gb|AEKJ01000014.1| GENE 68 63622 - 65643 2116 673 aa, chain - ## HITS:1 COG:BS_ylpB KEGG:ns NR:ns ## COG: BS_ylpB COG1200 # Protein_GI_number: 16078650 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Bacillus subtilis # 13 666 9 667 682 563 43.0 1e-160 MEIVNLKVLLNPVSDLDGVGVKTAEALSQLKIKTIYDLLFYFPRRYDSLETFPLNELKDG QKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHDIIMVNFFNQPWLKKQLQKGNDIAIYG KYVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFISQAIEKYLPQLPEVIPQYLR DKYKLLDVKSMIIQMHQPKDLQQVKIAQRTAIFLEFFVFQLQLSQLLYANDQKNNGIAKK YDSSAINELKESINFQLSDDQIQAINEILADLASAKRMNRLLQGDVGSGKTIVAVFAIFA CITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSSTKLNEKKEIYRELKDGII NLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMVDILAMSATPIPRTLA LSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQGFQIYVVAPLIAESD KLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMDAFIHGSIKILITTSVIEVGV DVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDPKTDSAKKRLKIISTCDD GFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTTAQKESKILVHQNPELVGE EYDFLKLLMEYDD >gi|311091976|gb|AEKJ01000014.1| GENE 69 65645 - 67270 1981 541 aa, chain - ## HITS:1 COG:SPy1885 KEGG:ns NR:ns ## COG: SPy1885 COG1461 # Protein_GI_number: 15675702 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pyogenes M1 GAS # 1 541 12 554 554 545 55.0 1e-155 MVRVATHRMGKNAEFVNKLNVFPVPDGDTGTNMNLTMESGARAVNENNSSCVGDLTKSLA KGMLMGARGNSGVITSQLFRGFYKATEHKKVLTAQDLSQAFSNGVATAYKAVMKPVEGTI LTVARVAAEKGASKASETNDVIAVMKAIVSGAKEALKTTPDLLPVLKQVGVVDSGGQGLV FIYQGFLEGLMGKKVNDAFQLGENEMDELINVTHHQAESAQVQLSTGDIKNGYCTEIMVD LTASIADKKKFDLAEFRAYLSELGDSLLAVSDGDIAKVHIHTEYPAKIFAYGKQFGKLGK IKIDNMRIQHETIVENSKEQEESVDFAVIAVASGHGIRDIFKSEGVNRIISGGQTMNPST QDIIDAINKSGASKAIILPNNGNIIMAAKQAAEVANIPVGIVPTKTISQGLTAMLAFDPE VSVEENVTAMSSELDTVVSGEVTKAIRDTTIDDIEVKEGDYLGIIDGKIKIDDPDIISAS LRMIENMLDDDSEIVTLMYGSDANATQAEEIADKLRASHEDLEIEIHDGGQPVYYFLVSV E >gi|311091976|gb|AEKJ01000014.1| GENE 70 67333 - 67692 505 119 aa, chain - ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 118 1 118 121 119 55.0 2e-27 MAVKIKTKYGLVDISSNVISTVVGGAATTNYGVVGMASKNALRDGAFAILNKENYRKGVV VKIDDNQIVVDVYIIVGYGLKISEVSRNVQDSVKYNLENLLGIKAKTVNVVVQGVKVLD >gi|311091976|gb|AEKJ01000014.1| GENE 71 67868 - 68053 282 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519405|ref|NP_965335.1| 50S ribosomal protein L28 [Lactobacillus johnsonii NCC 533] # 1 61 1 61 61 113 91 4e-24 MAKDIITGCKTTFGNKRSKALNAVRRSWKPNLQKVRILVDGKPKRVWVSARTLKSGKVTR V >gi|311091976|gb|AEKJ01000014.1| GENE 72 68235 - 68894 653 219 aa, chain - ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 4 213 3 214 218 191 51.0 1e-48 METFIHAYSWINLRFLLQGLMVTVYISIVSIILSFILGLFLGIVRYLKIKVISHIVGFIV DILRNLPLLLIIFFAYFGLPQLGIVTNVTCAAIIALVVFEGAMLAEIVRSGIGAVNKGQL EGALSNGMTYAQAMYHVVVPQALHFMIPAILSQFVSLIKDTSLATIIVLPELLYHAQIIY SQNTTYLLPMYVIVALMYFIICFTLSLIADHLQKQYSAK >gi|311091976|gb|AEKJ01000014.1| GENE 73 68904 - 69542 518 212 aa, chain - ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 2 211 3 212 216 193 49.0 2e-49 MINILVNHWPQFMQGLSSTIMCSLIAIFFSLIIGVICALVEVSPCRIPHLIARIYVEIFR NIPLLIIVMIFYLVVPQMGLKLTGFGAGTIALTLYTSAFISETVKSGINSIGIGQMEGAR SNGMSYVQAMRYVVLPQALKVVIPPLGNQFISLIKNSSVLAFVAGFDLMYQADVISLASF ETVNTYVVVGLLYLVLTLPLSYYMRYLEEKLA >gi|311091976|gb|AEKJ01000014.1| GENE 74 69539 - 70360 957 273 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 1 264 1 272 273 226 46.0 5e-59 MKKIHKILLAPFILFLLLFLGGCGQAKKVNVYQKVKQSRTMIWGTRADTRLFGYMDIKSS KIIGFEIDMAKAVTKQMLGKDAVAKFVQTTPKTRIPLLKNRNINAIWATMTITPERKKQV DFARPYIGAGASLLVPNNSKIKDVHQLNNKKVLAVKGTTAVADIKKVAPKAKVLEYDDYG QAFSALKAGQGVALTTDNCLLAGIASENPGFHLIGKNYTNQPYGIAVDKGQAELRDHINK ALLALKKNGTYHRLLVKWFDGIPGFNIKEAEVL >gi|311091976|gb|AEKJ01000014.1| GENE 75 70369 - 71109 289 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 233 1 230 311 115 31 6e-25 MSSIIEFKHVNKYFGKLHALKDINLTIDEGQVVSIVGPSGSGKSTLIRTMNGLETIDSGQ LIVDGYDVTDKHTDINKIRRDVGMVFQHFNLYENHTVLENITLAPKIVLKRPDAENEKIA MDLLRKVGLEDKAQQYPRNLSGGQKQRVAIARSLAMRPKAILFDEPTSALDPEMIQDVLD VMKYVAEQGITMVVITHEMGFAREVANRLIFFENGQVLEDTDPEKFFNHPETERARQFLS KVISTK >gi|311091976|gb|AEKJ01000014.1| GENE 76 71282 - 72370 1111 362 aa, chain - ## HITS:1 COG:lin1180 KEGG:ns NR:ns ## COG: lin1180 COG1363 # Protein_GI_number: 16800249 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Listeria innocua # 4 359 2 358 359 186 34.0 6e-47 MKKEQEIKMLKEFSNANSTSGFEEEFVKLFATYAQDIANVEIDGMYNLYASKKENQGNRP VIQIDAHSDAVGFITQAVRPNGLIKFVPLGGWVKYNIPSLKVRIRNKEGEYISGVVATKP PHFMTAAERNTTPDIASMSIDVGSCSREETINDYKIDTGCPIFVDVECAYNPKTGLFFGK DFDDRFGAGAMISILDNLKNEKLDFDLVCALSAQEEVGLRGAYVTARKVKPDVCLVLESC PADDTFEPEWLSQTGLKRGPMLRDMDTSFLPNPRFQQYACQLADQLNIPYTRSVRTGGGQ DGAAIYYENGAPTIVIGIPVRYEHSPYCFSAYTDFKASVDLATALVRDLTVEKLNSFKLQ SL >gi|311091976|gb|AEKJ01000014.1| GENE 77 72537 - 73736 997 399 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 8 393 4 390 402 348 47.0 9e-96 MNKQEIIFKQNLFVLAIAVFIAGIGFSEALPFLPLYIKTLGTFTHKELNFWVGFTFSTTY FVSALVSPWWGKLADQRGRKLMILRSSIGMAIAIGSMGFVTNVYQLFCLRMLQGFFAGFV SNANALIATESPKNQAGKAMGTMAASFTAGNLLGPLLGGLLASMFTYHFTFLLTGILLFI SFILSFLFVKEEFKPISKQSVITNKQVINSLKSSNLIFGLLLTTIIIQTANSSINPIVAL YVANLMHNQGNTIFVAGIIAALPGIATFLAAPRFGELGDKIGTHKIIIGGLISAILFFFA TAFVTNAVQLGFLRFLIGFSDACLFSQVQTMLAKNSSIQTTGRIFSWNQSAMYIGNIFGP LVGSTVAGFFNYNVLFIVTAALVGINLLLFHINVVKNIN >gi|311091976|gb|AEKJ01000014.1| GENE 78 73934 - 75244 1063 436 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 13 434 5 435 447 414 49 1e-114 MNKENFHNDDAILDVYEKPNLSQGVLLSLQHLFAMFGSTVLVPILVGLDPSIALLASGVG TLVHMILTHFKIPAYLGSSFAFIATMQALMKADGYPAIAQGAIAAGLVYLVVAYVVSKIG SAWVDKVLPPIVVGPVIIVIGLSLATTAANDAMLHNQKYNLIYFLVAIFTLVVTLCFQMF FKGFTSLVSILLGIICGYILSCCLGIVNFSGVAKAAWFTFPALDVPIISYKLKLYPAAIL TMAPISFVTMSEHMGHIMVLNSLTKRDFFKNPGLHRTLLGDGLSTITAGFIGGPPTTSYG ENIGVLAMTKVHSVWVLAGAAVFAIIFSFIGKIAALIESIPMPVIGGISFLLFGTIASNG LKILVDDKVDFSEKRNLLIASVIMVVGIGGAYLQLGNFQLTSVALSTILGMILNGILPKH AAIEQQLAEKEGTKII >gi|311091976|gb|AEKJ01000014.1| GENE 79 75297 - 76097 888 266 aa, chain - ## HITS:1 COG:SP1063 KEGG:ns NR:ns ## COG: SP1063 COG0842 # Protein_GI_number: 15900933 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 226 1 226 266 190 47.0 3e-48 MKPTDFRKKSNLGLYGLGLLIKYETKAFFENKGSVLSLLLTPILFFVFISTGISRMTGNV IYAGMKVSYLEYSYLGIMIYLVLGQMSQTIYRTTIDKKYGLLALKLLSGIKPFYYVIGMS TYAMLGLSVQMFALIILANFFGIHYSLMKIGVMIVIIILTLLFWSALAVAITLRISNYQV RDNILSFVITPLSFTAPVFYVLDYAPLWMKWLAKINPVTYQLGALRQGVMLNQYFQSIII LLVFALAATALSSNLVAKSKLNLTEY >gi|311091976|gb|AEKJ01000014.1| GENE 80 76084 - 77013 291 309 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 3 303 9 308 309 116 25 4e-25 MKISVNNLAIKYQDHYGIKNISCELTAGKFVALVGHNGSGKTTLCNALVGLLEPSEGDIN IQDLSTDKQNFSTIGFAPQSQVVDWYSNVEANIMLGAQLAHLKPNEAKNQLDLILRLLDL SDLSDRSLTDLSGGQLQRVQIARAIVHNPLIYILDEPTVGLDAQNTDNLMKYLVKEAQSG KLVIVSSHDLFLLQEYAEDLLLLDEGKLIYHGSINDLLKAKGNSRKFLITLDNEYSVADD FMIKNDDVIRVEHESDNTWQLEVKPEVTISDLMLMFKKEIKVTSCVEHEKTLKEVYLSMS KRSGNYETN >gi|311091976|gb|AEKJ01000014.1| GENE 81 77245 - 78693 1741 482 aa, chain - ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 476 1 477 486 239 30.0 1e-62 MTKNQLKFLTIALILGNIMSGLDSTIINTAIPSIVANLHGIQFMGWIIAIFLLGMSISIP LWTKVAERIGNKNAFLVTLSFFIVGSILEAISQDMTFFLSVRIIMGIGAGGMGSLPYIIV GYIYPNIKQRTKALGILTSGFNAAAIVGPLIGGWIIDISSWHWIFYINIPIGLLAMLLTA IFYKKESISKFSKFDTVGSALLVTGLITFLLGIQLLGLVSVWLVICCLIISLLIMTYFFI HENKEENPVLPLSLFTNKNLIGDFLLFALTWGAFIAVNVYLPMWAQAFLGMTALIGGMTL IPNSCFSIVASQFVYVLQGRTKTYYIILVGIIGMLISSFSLLMADLSIPLWILIFTSAFS GMGVGFIFVELQVKVQVDAGREHMADATSTSYLIRILAQTVMAAIYGVIMNLSLNQGIKA HPQITLSMLNKMSDCRTASELPAKLLPLMRAISHSGIRVIMLVSCLLLVISLVINYKFNP RH >gi|311091976|gb|AEKJ01000014.1| GENE 82 78803 - 79564 173 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 26 229 147 340 398 71 29 2e-11 MNKPIFELKNVTVLGNKNSSNVTKILNNLSLTINDGDFITVIGTNGAGKSTLLNVISGAL AIDDGIILHNGRDITNLSEEEHTKFLSRVFQDPQLGTAPRMTVAENMLLALKRGERRFLV PRKLKQNRERFLKLAKMMHNGLEDRMDTFTGNLSGGQRQALSFLMAILKKPDILLLDEHT AALDPHTSQSLLNATREIISQDKITALMITHHLEDALNYGNRLLVLKQGKIIADLDHNAK IKLTTDDLYRYFE >gi|311091976|gb|AEKJ01000014.1| GENE 83 79557 - 80456 991 299 aa, chain - ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 3 299 1 288 288 244 50.0 2e-64 MNLMVSAIGQGLLWGLLGLGLYISFRILNITDMTVEGTFPLGAVISVTLISHGFNPLLAT LIAFLGGMFAGLITGLLYTKGKIPPILAGILVMTAIYSINLRIMGRSNISLLGCKTLFSN KFLLRLPKYFDNVFLGLTVMVVITTIVILFLQTDYGQAFIATGDNPKMAKSLGIKTDNTI IAGLMGSNGLVAVCGALIAQSNGYADINMGLGTIVIALASIIIGEVAFGELTLNQRLVAV TLGSILYRLIILCVLQLGFSTNDLNLLSSIVLAICMMIPRFDKLFKIKKTILRSVKSSE >gi|311091976|gb|AEKJ01000014.1| GENE 84 80456 - 81451 1205 331 aa, chain - ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 2 331 14 344 344 213 36.0 6e-55 MKRLYTLIAILLIILSVAFVNQKTQSKPKHNMPVVGVLTLLHHPALDQIYDGFVKEMAKQ GYHKDKNYKLEYQNAQGDQSNLEIMSKKLVNMSPDILVGITTPASQSLAHATSSIPIVLG AVTNPKKAGLVANNDHPNTNISGVSDQAPVEEQLKLVKKLMPKNAKVGIIYTSNDSSAVT EHDLFVKIAKKYHVNLKSYSIANSNDLNQVSQKMLNEVDAVIVPTDNTIAGAMQTLVKNA DAVRKPIFPAVDTMVKQGGLATYGINQNYLGVLIARLVVDILKGKKKIATTPIQYVRHGI PILNLKKANQLGIKIPVDFLKESIKEGEVFE >gi|311091976|gb|AEKJ01000014.1| GENE 85 81846 - 83063 1091 405 aa, chain + ## HITS:1 COG:no KEGG:SAG1837 NR:ns ## KEGG: SAG1837 # Name: not_defined # Def: prophage LambdaSa2, lysin, putative # Organism: S.agalactiae # Pathway: not_defined # 259 371 3 112 468 91 44.0 8e-17 MKKRKFVRNLSKGLILSVATLCGESLLNVQQSKADTRTSMNGSTLRIVYNGRGKVNLLNS KFKYQNQYVANGTNWKVWEKLVSNQGTLYRIGNENQWVPEQYTDKKSTTQAPKKPTTNTN NNVQAKTILPTANVVKIKAATGVNVYTAPVNGRYVKHLNPNTSWKYFKIEHGNDGYTWFN LGGAQWISSKLTDQPQLVKNISRVTQAPKTVEKAKTISKAKSTYNPVQNLTNIYIPKHVY IPKHNNMSIYDMGLNNGPVNIDSAISFMRQLKNNGVQYSMFGKRDGSDGTADCSGAVYAA LRAGGASSLGYIPNTDSMHNWLLKNNFTEVAHSTRIPNQKGDVVIFGTKGLSGGAAGHVV LYTSPYTIIHCTDRDDSHSGVLEEPASNIEGCYTSMGGFYVYRQI >gi|311091976|gb|AEKJ01000014.1| GENE 86 83102 - 84721 1599 539 aa, chain - ## HITS:1 COG:SP0342 KEGG:ns NR:ns ## COG: SP0342 COG0366 # Protein_GI_number: 15900272 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 4 538 5 534 535 671 61.0 0 MTPWWKKAVIYQIYPKSFQDSNGDGIGDLPGIITRLDYLAKLGIDAIWLSPVYQSPGIDN GYDISDYQAIDPQYGTMDDMDNLILEAKKRNIKIIMDLVVNHTSDQHAWFVEARKNKENQ YRDYYIWRDPVDGQEPNGLQSAFSGSAWQYDKTTKQYYLHFFAKQQPDLNWSNSIVRDKI YQMMNYWIDKGIGGFRMDVIELIGKDPDKMVRENGKMLHPYLQEMNQKTFGQSDLLTVGE TWNATPKIAEDYSDPARHELSMVFQFENQTLDQKDGCSKWDLKPIDLVELKKILVKWQTE LDFKHAWNSLFWENHDIPRVISRWGNDQKYRVVCAKMFAIVLHLMHGTPYIFNGEEIGMT NSPVKNINEVEDIESINMYNERLDAGYDKDELLHAINVKGRDNARTPMQWSDALNAGFTS GNPWLRVNPNYTDINVKQCLADPDSIFYTYQKLIELRHHNQIVVDGDFQLIEETDAQILA YYRILGDQKWLVVANLTDKEKPFNCHEQYQKVLVENYTTPSNLQNIILKPYQAFVVTIA >gi|311091976|gb|AEKJ01000014.1| GENE 87 84776 - 86155 1134 459 aa, chain - ## HITS:1 COG:SP1438 KEGG:ns NR:ns ## COG: SP1438 COG1122 # Protein_GI_number: 15901290 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 362 1 361 374 356 51.0 4e-98 MLMIRNAYLSYPDRKIVLKNLNLTIKTGECVVLTGISGSGKSSILNLINGLATRYDNCKI SGEVLFQHHDIVKLELYQIAQLIASVFQNPKTSFFNVNTTMELLFFLENNGVSRQEMQKR LSDLLNLFPIANLLNRNIFELSGGERQILSIATAYISGVQCVLLDEPSANLDSKYIKIVA KMLAILKKRGVTLLVAEHRLYYLMDVADRVLVVANGTISQEYSISKFNQLSEKKLYAMGL RTRQEVQLKPFSPMTSGEFYIKSLYKKLINHQILKIRDLSLKKGNIYGVVGLNGSGKTSL IKALLGVDKKCQVAIYLDDKLLSTRQRIKLSSWVMQDVNNQLFTDSVMAEIKLGIGNISV DKLNQVIKKLKLSSLLDRHPLSLSVGQKQRVAIASTILSQKTLLYFDEPTSGMDYLNMIA ISKLLRDSSTNNNIIIIVSHDVEFLNQTVDHVIKLSSNL >gi|311091976|gb|AEKJ01000014.1| GENE 88 86149 - 86838 463 229 aa, chain - ## HITS:1 COG:SP1437 KEGG:ns NR:ns ## COG: SP1437 COG0619 # Protein_GI_number: 15901289 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pneumoniae TIGR4 # 84 225 1 142 147 140 46.0 2e-33 MQFIHDDNRHNLHPLTKFFAVICLSFTPFYRVSALYCWVVVATIAILFALQFNYRDAIKA VIYFGFLSLLPSDMNFRHIGLIHVLFSLILIIKAFYLPCLSAKLLIKTTDVGSLLSALSQ INVPRTIRIPIAVIFRFFPSFKQEYQNMHLAMKVKNITWRTPIKYITYMWIPLLILSSNI ADDIAKVAETKCIYNPIKRTHYFSIKFGLMDILYLLSLLLLVTKGCKLC >gi|311091976|gb|AEKJ01000014.1| GENE 89 86838 - 87446 587 202 aa, chain - ## HITS:1 COG:no KEGG:FMG_1400 NR:ns ## KEGG: FMG_1400 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 202 1 194 194 108 39.0 1e-22 MENSKLKVKDLVNIGVFVVIYFLILGISSMTFVFLGMTMVKSTLALLCFALAPFVTGIIL GTPVILLMAKLQKPWGFFTFGILSPILLWLSGHNSFIPAVGGILLAAVAEFILYLGKYKS FKAMLIAYACYNIWTMLPLADILFVRAKRLKMIQKMGLALVNNVFTTPNILLILMFALVG GVLGALLGKKMLKKYFTKAGIL >gi|311091976|gb|AEKJ01000014.1| GENE 90 87572 - 87727 191 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805534|ref|ZP_07699579.1| ## NR: gi|309805534|ref|ZP_07699579.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 1 51 1 51 51 84 100.0 4e-15 MKVRYLGNTEGISLTKNKIYEALDYEEGFLRVIDDTGEDYLYDFEKFQVIE >gi|311091976|gb|AEKJ01000014.1| GENE 91 87901 - 88056 178 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLSKKEIEEAYLARLESETRQPETEEQRKLAEERRRKLKEVLKILQEQDN >gi|311091976|gb|AEKJ01000014.1| GENE 92 88043 - 88390 336 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501501|ref|ZP_05744403.1| ## NR: gi|259501501|ref|ZP_05744403.1| arsenate reductase [Lactobacillus iners DSM 13335] hypothetical protein LineA_05919 [Lactobacillus iners AB-1] arsenate reductase [Lactobacillus iners DSM 13335] # 14 115 1 102 102 183 96.0 3e-45 MLAIMASSIQNGLLKNELQQDIIFYRKEYYVKDLEKPINKFFSTSVTTKGVIGGVPNLAI IVSKETFGAYIELLSHIDYKKQREFLINSGLNLDKISDDRGLLIYKVRGESNETK >gi|311091976|gb|AEKJ01000014.1| GENE 93 88670 - 88867 250 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653345|ref|ZP_07906267.1| ## NR: gi|315653345|ref|ZP_07906267.1| minor capsid protein [Lactobacillus iners ATCC 55195] minor capsid protein [Lactobacillus iners ATCC 55195] # 1 65 84 148 148 128 100.0 1e-28 MFTKEEIKYMKSLGLNLDFHKPLLNEDYERIEDIVSHQLQVYGFDKNYNPTTIGILCENI LDKFD >gi|311091976|gb|AEKJ01000014.1| GENE 94 90184 - 91395 1363 403 aa, chain - ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 4 400 1 395 395 401 50.0 1e-111 MEMIKKILAVNAGSSSLKFKLFSLKDEQVLAHGQADRIGLPEATFVLKLANGEVYQDKTE IRTQEDAVGKLLSWLTKSKIVNDLSEIAGVGHRVVAGGEYFAHSTLIDQDNLHKIYELNE YAPLHNCHEADGIKAFMKLLPNVPQVGVFDTSIHQTLDQVHYMYSLPYEYYEKYKVRKYG AHGTSVRYVSQRIASILKRPLDELNMVICHLGSGVSITAMKNGQSYDTSMGFSPLAGVTM SSRSGDIDPSALQYILGKETDLNFDQMIDILNNKSGLLGISGISPDMRDIRKAISQGDER ASLARNIFINRIVRYIGAYYLELQGIDVIAFTAGVGENDIGIRKEIMDQMSCYGLIPDYD ANQINGIEKIVSAPNSKIVAMVIPTNEELMIARDVVRIAKISD >gi|311091976|gb|AEKJ01000014.1| GENE 95 91406 - 92407 1137 333 aa, chain - ## HITS:1 COG:lin1617 KEGG:ns NR:ns ## COG: lin1617 COG0827 # Protein_GI_number: 16800685 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Listeria innocua # 5 330 4 327 332 155 33.0 1e-37 MEDLEHLNELYLSFEEVVDILRKELNVTFTEALVETFDNLEHKKIKVEANAPSAKIVELL TKKYANLEYEKLETSVKSHLFYLLTLKAADVDNFNSTQLPTPRILATIVALLWSKIVPQT AKEVIDPAIGSGTLLFSLIDQLRFLNHSKNSFVLTGIDNDPAMLDLADVRSYLNKLPIDL LRQDALQPWLTGKKDVAVSDVPVGYYPLDNNAKNFDNCQLSGHSFAHILFIEQIIKNLNP SGYAFLIVPKMILSGKEAADFMTWLTKKVNILAVVDLPDDLFANMKYPKSILVLQNHGQK MQLRKVLVTKLGSLKDKSSLVKLNVELNNWVNE >gi|311091976|gb|AEKJ01000014.1| GENE 96 92498 - 92671 108 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501495|ref|ZP_05744397.1| ## NR: gi|259501495|ref|ZP_05744397.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_05949 [Lactobacillus iners AB-1] hypothetical protein HMPREF9213_0926 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1455 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9219_0537 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0465 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9216_0848 [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0360 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF9210_0651 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_0926 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1455 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9216_0848 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9218_0465 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0537 [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0360 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF9210_0651 [Lactobacillus iners SPIN 1401G] # 1 57 1 57 57 88 100.0 2e-16 MNLKNNRIFSILKMKVPATALFCALLVIVTCIVFIKYYQSAFFADLQINLDIYKSLR >gi|311091976|gb|AEKJ01000014.1| GENE 97 92655 - 93146 393 163 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1299 NR:ns ## KEGG: FI9785_1299 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 9 163 5 165 167 87 34.0 2e-16 MKIFKTKNKGFMLAEAIIAILITVLCFEILYSTINTVRTVSHKRDGVNNVAFAYIQLNRF IKDRDLMLDIKHSDVKRAILKQKKKDEENKVYYETYSFYERKGQLRMSQGYMPLMMNLRT VYFSYVNKDVMKMKIVERDGRCSILAFKLKEMEKDKRANEPKK >gi|311091976|gb|AEKJ01000014.1| GENE 98 93133 - 93351 74 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501493|ref|ZP_05744395.1| ## NR: gi|259501493|ref|ZP_05744395.1| hypothetical protein HMPREF0520_1003 [Lactobacillus iners DSM 13335] hypothetical protein LineA_05959 [Lactobacillus iners AB-1] hypothetical protein HMPREF9214_0125 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0928 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0290 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9218_0467 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9216_0850 [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0520_1003 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9214_0125 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0928 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0290 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0850 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9218_0467 [Lactobacillus iners LEAF 2062A-h1] conserved domain protein [Lactobacillus iners UPII 143-D] # 1 72 1 72 72 109 100.0 8e-23 MKNKIRAFLLADACLGLFLSIVAMSLVYYSVVELQKIKTTVEIKVDRKLAEKMMAETKIT TVKLHNRTYENI >gi|311091976|gb|AEKJ01000014.1| GENE 99 93341 - 93772 308 143 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1272 NR:ns ## KEGG: LGAS_1272 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 10 143 7 138 138 79 29.0 4e-14 MLLRIKRLSRGFTLIESLIVLIIACSIISFPIIELKGYRDNLALINTRAQVKSAINFCLK ESIINKRVYFIRYSETSNKLKVMSDWSTAEKTFSINSQVKIINIDNLTIKKKSYVAPRTI YFKCGKITKRMTVQLMWGRLIEK >gi|311091976|gb|AEKJ01000014.1| GENE 100 93756 - 94082 364 108 aa, chain - ## HITS:1 COG:SPy0103 KEGG:ns NR:ns ## COG: SPy0103 COG4537 # Protein_GI_number: 15674326 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGC # Organism: Streptococcus pyogenes M1 GAS # 5 89 6 90 108 59 37.0 1e-09 MKVLHKLLKRKVKGFTLIEMVVVIAIIAMLILLIAPNLFSYRDKANNTANDAFIKTVQMQ VDLYKDEYGKNITVSDMHDKNYLTDNQVKKIEANHITIKDGKVIAPKN >gi|311091976|gb|AEKJ01000014.1| GENE 101 94097 - 95092 1109 331 aa, chain - ## HITS:1 COG:SA1373 KEGG:ns NR:ns ## COG: SA1373 COG1459 # Protein_GI_number: 15927123 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Staphylococcus aureus N315 # 3 331 9 355 356 85 23.0 1e-16 MFFKVFSKDKLNKSEQLVFLDYLQQSLNNGFSFNQSLKILPHVWNEKVNIIQKLSSNIAQ GNDIGQSLVAIGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYPAV LIVMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFIGCSYVVILAKKQDYTSF KKLIHVPILGRLVKLYIHYLIVSEFAILMCNGYTLQQICNFFAHETNQSIAKTITCKMND ALISGNDIEKIIKQEEFLPDSLVLLFGVGADTKELSKKCVLLSQTLFYELNFKLGKAVVS IQPFCFILIGFCILAMYLKILMPMYASIQNI >gi|311091976|gb|AEKJ01000014.1| GENE 102 95064 - 96038 1079 324 aa, chain - ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 7 315 6 302 313 209 38.0 5e-54 MDTSMYADELIKHAIKQRVSDIFILPTTDCYTIKFKTLVGLQIVENISANKGVEVINHFK FIAEMDIAEHRRPQVGSFIKENNGKNVFLRFSSVGDFLNRESMVIRLIYDMGDCHYFFPE QFEKLKQLSKKRGIIVTSGPTGSGKTTTMYQLIKQISSEKFVMTIEDPIEILEPDFLQTQ INNQAGIDYLSLLKAALRHRPDILVIGEIRDAQTAKVAINAALSGHLVLTTIHAKSTYQI IDRFLGLGIKMPELENALTAISYQRLLPTVKNTFSCLLDIADATKWRKSVSEHDTNFVDW QQNIENLYHKGVIDSDVFQSFLEG >gi|311091976|gb|AEKJ01000014.1| GENE 103 96160 - 96471 382 103 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653335|ref|ZP_07906257.1| ## NR: gi|315653335|ref|ZP_07906257.1| conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 27 103 2701 2813 2813 107 61.0 2e-22 AAPTPVPVPVPTPEPTPKPAPTPVPVPVPTPEPTPKPAPTPKPELQPKPELEPKPESQPQ LEPKPEQKKLPQTGSDEGYALGMAILGLSCLLTLADKKRKNKK Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:39:19 2011 Seq name: gi|311091860|gb|AEKJ01000015.1| Lactobacillus iners LEAF 2062A-h1 contig00035, whole genome shotgun sequence Length of sequence - 117666 bp Number of predicted genes - 119, with homology - 116 Number of transcription units - 52, operones - 33 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 - CDS 1 - 1198 1657 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 1225 - 1284 9.9 - Term 1281 - 1337 2.2 2 1 Op 2 6/0.000 - CDS 1361 - 1918 726 ## PROTEIN SUPPORTED gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) - Prom 1938 - 1997 2.4 3 1 Op 3 6/0.000 - CDS 1999 - 2682 478 ## COG1040 Predicted amidophosphoribosyltransferases 4 1 Op 4 . - CDS 2660 - 3946 1035 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) - Prom 4116 - 4175 7.3 + Prom 3693 - 3752 8.0 5 2 Tu 1 . + CDS 3991 - 4656 442 ## COG1739 Uncharacterized conserved protein + Term 4760 - 4823 -0.6 - Term 4638 - 4699 17.1 6 3 Op 1 . - CDS 4703 - 5839 1223 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 5863 - 5922 8.2 7 3 Op 2 4/0.000 - CDS 5934 - 7565 2195 ## COG1418 Predicted HD superfamily hydrolase 8 3 Op 3 1/0.214 - CDS 7649 - 8686 1161 ## COG0468 RecA/RadA recombinase - Prom 8708 - 8767 11.2 - Term 8729 - 8773 9.2 9 4 Op 1 5/0.000 - CDS 8809 - 9387 299 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 10 4 Op 2 . - CDS 9390 - 10466 1258 ## COG1426 Uncharacterized protein conserved in bacteria - Prom 10492 - 10551 7.8 11 5 Tu 1 . + CDS 10402 - 10563 106 ## 12 6 Op 1 14/0.000 - CDS 10575 - 11798 1164 ## COG0612 Predicted Zn-dependent peptidases 13 6 Op 2 . - CDS 11795 - 13024 1192 ## COG0612 Predicted Zn-dependent peptidases 14 6 Op 3 . - CDS 13014 - 15278 1878 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 15 6 Op 4 . - CDS 15294 - 15701 538 ## LGAS_1345 hypothetical protein 16 6 Op 5 . - CDS 15712 - 16224 646 ## COG0219 Predicted rRNA methylase (SpoU class) - Prom 16245 - 16304 3.3 - Term 16232 - 16262 1.1 17 7 Op 1 . - CDS 16325 - 17467 986 ## COG0628 Predicted permease 18 7 Op 2 . - CDS 17477 - 17857 516 ## LGAS_1348 glucitol/sorbitol PTS, EIIA - Prom 17963 - 18022 8.5 + Prom 17907 - 17966 8.3 19 8 Op 1 . + CDS 17993 - 19012 1182 ## COG2706 3-carboxymuconate cyclase 20 8 Op 2 . + CDS 19021 - 19854 839 ## COG1968 Uncharacterized bacitracin resistance protein + Term 19855 - 19914 13.3 21 9 Op 1 7/0.000 - CDS 19895 - 20818 250 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 22 9 Op 2 6/0.000 - CDS 20790 - 21596 856 ## COG0061 Predicted sugar kinase 23 9 Op 3 . - CDS 21596 - 22222 668 ## COG2357 Uncharacterized protein conserved in bacteria - Prom 22246 - 22305 6.1 + Prom 22080 - 22139 4.8 24 10 Op 1 . + CDS 22300 - 22914 659 ## COG4116 Uncharacterized protein conserved in bacteria 25 10 Op 2 . + CDS 22979 - 23596 576 ## FI9785_1382 hypothetical protein - Term 23420 - 23465 3.1 26 11 Op 1 . - CDS 23589 - 24458 634 ## COG4469 Competence protein - Term 24481 - 24532 10.6 27 11 Op 2 . - CDS 24536 - 25297 979 ## LDBND_0516 negative regulator of genetic competence, sporulation and motility - Prom 25326 - 25385 11.4 28 12 Tu 1 . - CDS 25388 - 25786 436 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Prom 25817 - 25876 6.2 29 13 Op 1 . + CDS 25920 - 26498 316 ## LCRIS_00174 RNA polymerase sigma factor 30 13 Op 2 . + CDS 26560 - 26985 328 ## FI9785_1700 hypothetical protein + Term 26992 - 27026 1.1 - Term 26974 - 27020 4.1 31 14 Tu 1 . - CDS 27022 - 27882 888 ## LJ1019 hypothetical protein - Prom 27918 - 27977 5.4 - Term 27961 - 27996 4.0 32 15 Tu 1 . - CDS 28017 - 30173 2528 ## gi|312872536|ref|ZP_07732604.1| Gram-positive signal peptide protein, YSIRK family - Prom 30280 - 30339 13.2 - Term 30301 - 30347 6.4 33 16 Tu 1 . - CDS 30355 - 31659 1784 ## gi|309804647|ref|ZP_07698712.1| Gram-positive signal peptide protein, YSIRK family - Prom 31718 - 31777 10.1 + Prom 31715 - 31774 14.8 34 17 Tu 1 . + CDS 31963 - 32625 572 ## LGAS_1773 hypothetical protein + Term 32637 - 32686 -0.7 - Term 32823 - 32867 -0.5 35 18 Op 1 . - CDS 32868 - 33968 1506 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 36 18 Op 2 . - CDS 33980 - 35284 1446 ## COG1705 Muramidase (flagellum-specific) - Prom 35311 - 35370 8.8 - Term 35378 - 35431 6.3 37 19 Op 1 . - CDS 35477 - 35743 346 ## LA2_00960 hypothetical protein 38 19 Op 2 . - CDS 35780 - 35992 288 ## gi|312871542|ref|ZP_07731635.1| conserved hypothetical protein - Prom 36118 - 36177 7.3 + Prom 36089 - 36148 9.9 39 20 Tu 1 . + CDS 36191 - 36625 539 ## FI9785_219 hypothetical protein + Term 36661 - 36706 7.7 + Prom 36632 - 36691 6.6 40 21 Tu 1 . + CDS 36738 - 38810 2433 ## COG3158 K+ transporter + Term 38811 - 38838 0.1 + Prom 38823 - 38882 6.5 41 22 Tu 1 . + CDS 38924 - 40108 1122 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Term 40118 - 40164 5.5 42 23 Op 1 42/0.000 - CDS 40167 - 40958 895 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 43 23 Op 2 . - CDS 40962 - 41615 191 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 44 23 Op 3 . - CDS 41638 - 42426 880 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 42496 - 42555 5.1 - Term 42516 - 42551 1.0 45 24 Tu 1 . - CDS 42567 - 43763 1263 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase - Prom 43794 - 43853 6.3 - Term 43820 - 43878 10.5 46 25 Op 1 58/0.000 - CDS 43886 - 47551 4239 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 47 25 Op 2 . - CDS 47570 - 51250 4163 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit - Prom 51284 - 51343 10.1 48 26 Op 1 . - CDS 51453 - 53876 1945 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 53898 - 53957 6.7 49 26 Op 2 . - CDS 53959 - 55137 1117 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 55169 - 55228 8.6 - Term 55197 - 55245 8.1 50 27 Op 1 1/0.214 - CDS 55255 - 55764 473 ## COG4720 Predicted membrane protein 51 27 Op 2 . - CDS 55754 - 56629 775 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase 52 27 Op 3 . - CDS 56607 - 56834 346 ## - TRNA 56644 - 56717 80.3 # Pro CGG 0 0 - TRNA 56756 - 56827 79.2 # Gly GCC 0 0 53 27 Op 4 3/0.071 - CDS 56881 - 58377 2016 ## COG1190 Lysyl-tRNA synthetase (class II) 54 27 Op 5 . - CDS 58410 - 59405 480 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase - Term 59424 - 59467 3.1 55 28 Op 1 14/0.000 - CDS 59485 - 61530 1223 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 56 28 Op 2 . - CDS 61614 - 62906 1026 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 57 28 Op 3 . - CDS 62937 - 63275 481 ## LJ0280 hypothetical protein 58 28 Op 4 . - CDS 63275 - 63649 318 ## LGAS_0273 septum formation initiator 59 28 Op 5 3/0.071 - CDS 63732 - 63974 375 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 60 28 Op 6 7/0.000 - CDS 63988 - 67320 3800 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 61 28 Op 7 . - CDS 67341 - 67898 544 ## COG0193 Peptidyl-tRNA hydrolase - Prom 67953 - 68012 8.0 + Prom 67938 - 67997 11.6 62 29 Tu 1 . + CDS 68037 - 69008 1141 ## COG0039 Malate/lactate dehydrogenases + Term 69045 - 69103 13.1 + Prom 69063 - 69122 10.7 63 30 Tu 1 . + CDS 69148 - 69831 654 ## COG0517 FOG: CBS domain + Term 69845 - 69888 7.0 - Term 69836 - 69873 3.2 64 31 Op 1 5/0.000 - CDS 69908 - 71035 1132 ## COG0787 Alanine racemase 65 31 Op 2 . - CDS 71039 - 71401 301 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) - Prom 71434 - 71493 10.7 66 32 Op 1 2/0.143 - CDS 71518 - 72981 1651 ## COG0513 Superfamily II DNA and RNA helicases 67 32 Op 2 . - CDS 72997 - 74364 1391 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase - Prom 74424 - 74483 5.0 - Term 74435 - 74487 7.1 68 33 Tu 1 . - CDS 74503 - 74754 418 ## PROTEIN SUPPORTED gi|116628937|ref|YP_814109.1| 50S ribosomal protein L31 type B - Prom 74806 - 74865 10.2 + Prom 74831 - 74890 8.1 69 34 Op 1 . + CDS 75068 - 76396 1068 ## COG0477 Permeases of the major facilitator superfamily + Term 76401 - 76433 2.0 + Prom 76402 - 76461 8.3 70 34 Op 2 . + CDS 76550 - 77320 390 ## MARTH_orf139 hypothetical protein - Term 77193 - 77243 4.1 71 35 Tu 1 . - CDS 77322 - 78332 1068 ## COG0270 Site-specific DNA methylase - Prom 78360 - 78419 7.3 - Term 78925 - 78984 2.8 72 36 Op 1 . - CDS 79000 - 79185 279 ## gi|259500975|ref|ZP_05743877.1| conserved hypothetical protein 73 36 Op 2 . - CDS 79185 - 79517 275 ## gi|259500974|ref|ZP_05743876.1| ATP-dependent RNA helicase 74 36 Op 3 . - CDS 79517 - 79930 477 ## ABC1055 hypothetical protein 75 36 Op 4 . - CDS 79930 - 80580 462 ## Shel_18760 hypothetical protein - Prom 80618 - 80677 6.8 76 37 Op 1 . - CDS 80722 - 81255 582 ## COG2856 Predicted Zn peptidase 77 37 Op 2 . - CDS 81257 - 81616 326 ## Fisuc_2499 hypothetical protein - Prom 81725 - 81784 8.8 - Term 81805 - 81847 7.2 78 38 Op 1 . - CDS 82024 - 82599 468 ## COG0582 Integrase 79 38 Op 2 . - CDS 82581 - 83261 501 ## LAR_1502 phage integrase 80 38 Op 3 . - CDS 83258 - 83461 316 ## LAR_1503 hypothetical protein - Term 83481 - 83522 -0.8 81 38 Op 4 . - CDS 83532 - 84050 567 ## LC705_01954 hypothetical protein 82 39 Op 1 . - CDS 84151 - 84414 243 ## gi|256844384|ref|ZP_05549870.1| conserved hypothetical protein 83 39 Op 2 . - CDS 84425 - 84508 87 ## 84 39 Op 3 . - CDS 84505 - 85344 605 ## lhv_0264 FtsK family DNA segregation ATPase 85 39 Op 4 . - CDS 85346 - 85903 399 ## gi|259500962|ref|ZP_05743864.1| hypothetical protein HMPREF0520_0472 86 39 Op 5 . - CDS 85903 - 86268 399 ## gi|256844381|ref|ZP_05549867.1| predicted protein - Prom 86407 - 86466 4.6 - Term 86682 - 86714 -1.0 87 40 Op 1 . - CDS 86842 - 88065 1224 ## BSU06780 hypothetical protein 88 40 Op 2 . - CDS 88052 - 90001 1853 ## LLKF_0604 DNA helicase 89 40 Op 3 . - CDS 90004 - 90717 611 ## Celal_3329 hypothetical protein 90 40 Op 4 . - CDS 90707 - 93427 2252 ## COG1002 Type II restriction enzyme, methylase subunits - Prom 93467 - 93526 7.0 - Term 93686 - 93728 6.5 91 41 Op 1 . - CDS 93733 - 95097 1230 ## gi|259500955|ref|ZP_05743857.1| hypothetical protein HMPREF0520_0465 - Prom 95151 - 95210 3.3 - Term 95109 - 95150 5.7 92 41 Op 2 . - CDS 95270 - 96823 1783 ## COG0519 GMP synthase, PP-ATPase domain/subunit - Prom 96967 - 97026 10.3 + Prom 96896 - 96955 12.2 93 42 Op 1 7/0.000 + CDS 97162 - 97740 522 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 94 42 Op 2 . + CDS 97740 - 99023 400 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 99042 - 99071 2.1 - Term 99007 - 99075 9.1 95 43 Op 1 47/0.000 - CDS 99102 - 99464 503 ## PROTEIN SUPPORTED gi|161506945|ref|YP_001576899.1| 50S ribosomal protein L7/L12 96 43 Op 2 43/0.000 - CDS 99509 - 100024 701 ## PROTEIN SUPPORTED gi|227525593|ref|ZP_03955642.1| 50S ribosomal protein L10 - Prom 100162 - 100221 9.9 - Term 100052 - 100082 1.0 97 44 Op 1 55/0.000 - CDS 100252 - 100944 1031 ## PROTEIN SUPPORTED gi|238855647|ref|ZP_04645947.1| ribosomal protein L1 98 44 Op 2 45/0.000 - CDS 101041 - 101466 689 ## PROTEIN SUPPORTED gi|227525597|ref|ZP_03955646.1| 50S ribosomal protein L11 - Prom 101543 - 101602 7.2 - Term 101524 - 101559 -0.8 99 44 Op 3 . - CDS 101608 - 102159 752 ## COG0250 Transcription antiterminator - Term 102178 - 102202 -1.0 100 44 Op 4 . - CDS 102237 - 102404 153 ## gi|259500946|ref|ZP_05743848.1| preprotein translocase subunit SecE 101 44 Op 5 . - CDS 102410 - 102559 230 ## PROTEIN SUPPORTED gi|42518502|ref|NP_964432.1| 50S ribosomal protein L33 - Prom 102631 - 102690 9.6 + Prom 102589 - 102648 6.5 102 45 Tu 1 . + CDS 102698 - 103963 1242 ## COG0477 Permeases of the major facilitator superfamily + Term 103967 - 104000 3.1 - Term 103949 - 103996 4.5 103 46 Tu 1 . - CDS 104077 - 104622 511 ## LGAS_0345 ComX - Prom 104660 - 104719 7.9 104 47 Op 1 7/0.000 - CDS 104735 - 105511 543 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 105 47 Op 2 8/0.000 - CDS 105492 - 105935 320 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 106 47 Op 3 1/0.214 - CDS 105922 - 107265 1444 ## COG0215 Cysteinyl-tRNA synthetase - Prom 107364 - 107423 11.9 - Term 107375 - 107423 2.1 107 48 Op 1 . - CDS 107454 - 108953 1699 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 108 48 Op 2 1/0.214 - CDS 109033 - 110412 1532 ## COG1066 Predicted ATP-dependent serine protease 109 48 Op 3 . - CDS 110412 - 110963 715 ## COG0756 dUTPase - Prom 111072 - 111131 10.5 + Prom 111022 - 111081 9.1 110 49 Tu 1 . + CDS 111111 - 112457 1490 ## COG3579 Aminopeptidase C 111 50 Op 1 . - CDS 112498 - 113433 895 ## COG4639 Predicted kinase 112 50 Op 2 . - CDS 113497 - 114174 558 ## COG0588 Phosphoglycerate mutase 1 113 50 Op 3 . - CDS 114176 - 114376 276 ## gi|259500932|ref|ZP_05743834.1| conserved hypothetical protein 114 50 Op 4 . - CDS 114379 - 114615 281 ## gi|309808408|ref|ZP_07702307.1| hypothetical protein HMPREF9211_1071 115 50 Op 5 . - CDS 114640 - 115527 968 ## COG1230 Co/Zn/Cd efflux system component 116 50 Op 6 . - CDS 115542 - 116231 945 ## COG0406 Fructose-2,6-bisphosphatase - Prom 116262 - 116321 8.0 + Prom 116259 - 116318 9.4 117 51 Tu 1 . + CDS 116375 - 116953 425 ## COG0693 Putative intracellular protease/amidase + Term 117110 - 117151 -0.9 - Term 116931 - 116963 2.5 118 52 Op 1 . - CDS 116969 - 117292 316 ## COG2076 Membrane transporters of cations and cationic drugs 119 52 Op 2 . - CDS 117330 - 117665 197 ## gi|315653992|ref|ZP_07906908.1| conserved hypothetical protein Predicted protein(s) >gi|311091860|gb|AEKJ01000015.1| GENE 1 1 - 1198 1657 399 aa, chain - ## HITS:1 COG:L0334 KEGG:ns NR:ns ## COG: L0334 COG0653 # Protein_GI_number: 15672097 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Lactococcus lactis # 1 399 1 400 865 535 68.0 1e-152 MTNILKKLYDNDKRDLKKFEKIANKVEKLADHFANMTDEQLQHMTVEFRDRLAKGESLDD ILPEAFATAREGAKRVLGLYPFHVQVIGGISLHYGNISEMMTGEGKTLTATMPVYLNALT GQGVHVVTVNEYLSARDESEMGQLYKWLGLTVGLNLNSMSSDEKREAYSCDVTYSTNSEL GFDYLRDNMVVYKEQMVQRPLNYAIIDEVDSILIDEARTPLIISGQAEQANNEYIRADRF VKTLVEDKSDDNMDDNEDHGDYKIDWPTKTISLTNQGISKACEHFGLNNLYDIDNQVLVH HLDQALRANYIMLNNIDYVVQNGEVLIVDSFTGRVMEGRRYSDGLHQAIEAKEGVKIQEE SKTQATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNM >gi|311091860|gb|AEKJ01000015.1| GENE 2 1361 - 1918 726 185 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 1 185 1 185 185 284 75 2e-75 MLKYNVRGENIEVTDALKSYVEKRLEKLEKYFEIESDVIAHVNLKVYSEKSSKVEVTIPL PYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTRINRKSRERGMRDFFYDTDVVSGATE EKAVSGFDIVRNKHLNLKPMDAEEAILQMNMLGHNFFIFEDADTNGTSIVYRRNDGRYGL IETNE >gi|311091860|gb|AEKJ01000015.1| GENE 3 1999 - 2682 478 227 aa, chain - ## HITS:1 COG:L0319 KEGG:ns NR:ns ## COG: L0319 COG1040 # Protein_GI_number: 15673071 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Lactococcus lactis # 1 227 1 216 216 114 32.0 1e-25 MQLCLLCNQPFTDEVDLKTIFLPVSYVAKIICVNCYKKFKKITHPACINCNSYKNKLNQE QLCNDCLAWKVRYNGDLVFNRSIYQYNDAFHDLMVAYKRYGHYVLFNVLAELIKNQLPLA DRYIPIPSSPEHLQQRGYDTIISIYEPLCNLSPVLIKKAGGEAQGEKNKNERLATDNLFS LKANVKLSGQIVLLDDIYTTGRTIYHAWEIIKKAFPDCNVSSFTIAR >gi|311091860|gb|AEKJ01000015.1| GENE 4 2660 - 3946 1035 428 aa, chain - ## HITS:1 COG:SP2208 KEGG:ns NR:ns ## COG: SP2208 COG4098 # Protein_GI_number: 15902015 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Streptococcus pneumoniae TIGR4 # 6 421 9 427 432 289 38.0 8e-78 MNKLAGRQWINNQDNDIINSKVKKVPAIIDNICQRCGQVVIYRLPTGHKYCHSCIGLGRV SENDFLCRMSRVGDAVKKENHVLTWKGDLTDRQAKVSADLLHALQNNQDHLVHAVTGAGK TEMLFKAVEYFLQQGKYVALATPRLDVVNELYPRMCRAFANTKIGKYHGKMAQDPDNEPF IICTTHQLLKYYQAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDML TKVKNGEMGYSLLQQRFHGGLLAVPEEYLFWRKYISGESLHPFLIKVLNEIINSGKPLLV FVPRIAELGLYQTILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERGVT FPGVQVIVIAADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYHHYTKALKEAKKQIVEM NHATMSFM >gi|311091860|gb|AEKJ01000015.1| GENE 5 3991 - 4656 442 221 aa, chain + ## HITS:1 COG:lin2660 KEGG:ns NR:ns ## COG: lin2660 COG1739 # Protein_GI_number: 16801721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 6 210 3 207 211 172 43.0 6e-43 MTEKPEKYLTIKENGTHELVIKKSRFICSMARTNTVEEAEIFVKKITNLYKDATHNTYAY TIGFDNTCVKACDNGEPSGTAGIPELKALQLMNLNNITAVVTRYFGGIKLGAGGLIRAYS NSVTQAAENIGVIKCILQKKVSFAIQYKHLDKILYFLRQNHISIFKQEYTTDINLTVLLD SSDIDKFEQDINNILAKHVAFSIGQDLYNEILLTDFDYHNQ >gi|311091860|gb|AEKJ01000015.1| GENE 6 4703 - 5839 1223 378 aa, chain - ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 2 359 12 395 443 320 46.0 2e-87 MFQIIIKIFSLVIISVLITPFIRKLAFVLGAVDNPNARRVNKKPMPTIGGLGIFVSFNIG EFVLLRSQFPTHELFSILLASSVILLTGLIDDILELKPKQKMLGIFIAALIIYFLAGIRV NEISLPFMSPINLSWWSLPITVFWILALTNAVNLIDGLDGLATGVSMISLSTMGIVGFFF LHGWQNYVPLMCIMLATCLLGFLPYNFHPAKIFLGDTGALYIGFMISILSLKGLKNVTFI SLLVPIIILGVPLTDTIFAMIRRKLNKKPITVADKHHLHHQLMRMGLSHRQTVLAIYGIS LLFSFISLVFISSPAWGIWPLMIGLLFALELFVETIGLLGDKFKPLLHFIQNYINKMHRS DPQVGISHFSIKKDEHKD >gi|311091860|gb|AEKJ01000015.1| GENE 7 5934 - 7565 2195 543 aa, chain - ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 62 543 39 520 520 474 59.0 1e-133 MQNNYLSFVAIVIFSILISGVAGYCYRKHKWEQAAENAKNDAKHIIENARLDIQSAREKL LTEKQALQEMKKHVADLKKEKILEAQEEIHRYREKVENELNQRRKEVSRQENRLLQREDA IDRKDGMLDQKDCQLTQRENQVKELQAELSEKHQLADALIHQREEKLYEVSRLSVEDAKK IILSELSDKLVAERAALVKESNEQAQAKAEHYATKLIVEAIQSSAADTVSENTVSVVNLP NDDMKGRIIGREGRNIRSFEAMTGIDLIIDDTPDVVVLSGFDPIRREIAKRALENLIKDG RIHPARIEETVDRARKEVNDDIYEAGEGALMELGIHKMHPELVKILGRLKYRTSYGQNVL SHSIEVGKLTGVMASELGLDEKIAVRAGLLHDIGKSIDHEIEGSHVEIGVELARKYHESE IVINAIAAHHGDVPKMSFIAELVVAADTISSARPGARSESLENYIRRLEQLEKISKGYPG VKQAYAIQAGREIRIMVEPDKVSDDQIVLLARDIKNQIENEMEYPGNIRVTVIREKRAVD IAR >gi|311091860|gb|AEKJ01000015.1| GENE 8 7649 - 8686 1161 345 aa, chain - ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 4 340 2 340 348 477 73.0 1e-134 MAKDEKKAALELALKKIEKNFGKGAVMRMGEKVDTKISTISTGSIALDTALGVGGYPRGR IIEVYGPESSGKTTVALHAVAEVQKNGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPN TGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG NISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRKSEQIKQGSDPIGS RVKIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMAVDKDIVNKSGAWYSYGDDRIGQ GRENAKQYLEEHPDIFREINDKVRQAYGIDNKESDEDSSEDTEQE >gi|311091860|gb|AEKJ01000015.1| GENE 9 8809 - 9387 299 192 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 180 484 661 904 119 39 5e-26 MNLPNKLTTLRIFMIPVFILLLIFQWPVGFLVLGSTKIFWCNLVAAIVFALASFTDYLDG HIARKRGLVTNFGKFADPLADKMLTMTAFVFLITLNNSQHTYAPAWVVAIIVCRELAVTG LRLLLAENKGQVLAAKMPGKIKTTTQMLAIIFLLLSDIYYIGTILLYICLVFTIYSGYDY FKNSWHIFKGSM >gi|311091860|gb|AEKJ01000015.1| GENE 10 9390 - 10466 1258 358 aa, chain - ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 187 1 191 311 104 36.0 3e-22 MSDIGDKLKNARKANGMTIEDIEKITKIQRRYLYAIEENQFDQLPGDFYVRAFIKQYAQV VGLNGKELLDEYHKEVPEATPEKYVENSIDNKSQEVRKTTNNKKGLWKQYIPIAAAIIAF FVTVCLIYLIYAHFISNTNQKSINQVDNVTVKSSNEESQKKKKQRVKHKKKATSDIKLEK LSDTLYKVKKMGNKRTLVVKTGSTAVFARIFIDGRSVWHGVLNADDAHQVKIPHNVGNVT VFFANTSSAELIIGGKKLNITNKTMPNAARTITFLFAHKNAVKNNENNLVNNKDNETKQA EQNKTNNQADTKNENINKQESKNTTPQNKQPVQHSQQNETNKQNQQRDQGQAAGGNSR >gi|311091860|gb|AEKJ01000015.1| GENE 11 10402 - 10563 106 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSSIVIPFAFLAFFNLSPMSDILTLIPLSFTEKYTKTYSKQTRFTTNISVLPI >gi|311091860|gb|AEKJ01000015.1| GENE 12 10575 - 11798 1164 407 aa, chain - ## HITS:1 COG:BS_ymfH KEGG:ns NR:ns ## COG: BS_ymfH COG0612 # Protein_GI_number: 16078749 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus subtilis # 13 402 8 409 415 121 25.0 2e-27 MMEENLISKTYDSGFVANIILKPGFASKFMGIVVDFGGSDPQEISGGAHFLEHKLFAKKY GDIALKFERLGADSNAYTGFNETMYYAEFANHWPKILPLLFELVGEPYFTVDNIDQERKI ICQELATAKDDPEWYLINNLMSNMFPQTMFTHDIVGSEEDLAKIDISFLNKIYKKYYCSN NMRFIACGDFSPSQVQKIFTLVNKMQKKYINCAPKPKIAVQTIDSMATDEQITNTKSKNI HVGVAIKLPDLNKFTSNALLATDVLEMLIDAHFNSNNIWLSNMQLQNIINDQPDVDIYNT REGSFVIITAISRYPQKLVSAIKHELFRGHMSAELIELNKKEFLANYLRLTDDLNSYAQQ MAGTLLHGRSLAQIIEEVVQMNNSDMVSLYQDILAKSSIYSCIMSNR >gi|311091860|gb|AEKJ01000015.1| GENE 13 11795 - 13024 1192 409 aa, chain - ## HITS:1 COG:SA1121 KEGG:ns NR:ns ## COG: SA1121 COG0612 # Protein_GI_number: 15926861 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Staphylococcus aureus N315 # 8 408 10 415 421 62 20.0 1e-09 MRSKDLGNVVIEQNNKFKTGCIGCFFRLDLTPKNITISTLLAEVQSLLSEKYNTINRQSK RLSSLYDASLQIFPEINGNSIVMSYMLNFIEPREILDPEYDYAKIMETFFSIVHRPLIDE KVVNLAKSTLHSNIRDFFELPENRALHQFMKLWFKNQPNYQYVNVVNRDILDQLSLEDIQ DFVKILFKSPLMIYGQVADTNLFNKIGHSYFNIFKSKADFVNPQLVVDRDIDTFDESSDA QYEQAQVLMGYFYNHIQSMPRPWIGPLIMSYYLANTESSILFKKVREQLGATYGVDAFND ENHSLLLIRTGVNKNQVKQVKEIIQGCLSDLVCGLVDQEAFDHSKQLLINNFNSYGDIQE SMMIKAVTENLIGSFSTIPNMIKLIKYYTVNDLINLAKTMQLNGSYCLL >gi|311091860|gb|AEKJ01000015.1| GENE 14 13014 - 15278 1878 754 aa, chain - ## HITS:1 COG:BS_spoIIIE KEGG:ns NR:ns ## COG: BS_spoIIIE COG1674 # Protein_GI_number: 16078743 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 16 754 18 784 787 591 45.0 1e-168 MPRKNTSISKVKKEKLEWVITGLILAVLVLFSCADFGLLGNQATNLVRLFFGDAHYLASA IIGVCALVMIIYNQPPHLGKKRTWGLIFFTIALTALCSSLLFQKLMLQHDYMSVFLTRIG QEFLHGRDSMSVGGGLIGTLFCQIFNYLFGSYGSKFIEGLLIVAGLLMFFDVKFRTIVQK FQTLSKFFIAKNKDAGILLKDKYSDLIENYHDQHKEKQDFPNIGDLDAPKNEQLPEPASV DVVVDKANDLSNDNEISELAHDLVKKDDKNSLGRLDYVYPSLDLLDAVTNTDQSSDSKLI KQNTLTLENTFSSFGVSVIVKKAVLGPTVTRYEVQPAVGVKVSRIVNLTDDLALALAAKD IRIEAPIPGKPFIGIEVPNKIASTVSFREVMQKQENKAKQEVLSVPLGKNVTGQIVSADL RKMPHLLIAGATGSGKSVAINTIITGILMKAHPDDVKLILIDPKMVELSVYGGIPHLLIP VVTDAKLATSALRKAVREMERRYQLFAAGGVRNIGEYNEKVTLNNQNKANSVMELLPYIV VIVDELSDLMMVAGREVEDSIVRLAQMARAAGIHMILATQRPSVDVITGLIKANVPSRIS FAVSSGIDSRTILDQVGAEKLLGRGDMLYLPIGASKPERIQGAYINVDEVERVVDWVKKQ QATEYDQKMIPSDSEDAENDNSEQDDTDDEFYQQAVDLVRQQQTASVSLLQRRFRIGYNR AARIVDAMEKNGIVGPSTGAKPREVLLPPLKDEE >gi|311091860|gb|AEKJ01000015.1| GENE 15 15294 - 15701 538 135 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1345 NR:ns ## KEGG: LGAS_1345 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 133 1 133 144 179 65.0 4e-44 MKFKKMTPVTTEHFHFDVNEEEKVKNEVNVSLRQVYHQPEGQEADEGKDGKYFQLAVIFD VAPAPGEFSVSGLITQIVQFVDYFGDGTDLNPADYQLVSRPLVEEIETLIYQLTQVIFDE PLNITFKSNFDQLKH >gi|311091860|gb|AEKJ01000015.1| GENE 16 15712 - 16224 646 170 aa, chain - ## HITS:1 COG:L161988 KEGG:ns NR:ns ## COG: L161988 COG0219 # Protein_GI_number: 15673131 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Lactococcus lactis # 3 169 2 169 169 196 54.0 2e-50 MTNHVVLYEPLMPANTGNIARTCAGTDTVLDLIEPLGFSLDDKHMKRAGLDYWDKVKINK HDSLEDFLATLQSNDEMYLISKFSSKSYTDVEYTDPTKNYYFVFGKETTGLPKTFMREYY ERNLRIPMSDHIRAFNLANSVAIVLFEALRQQGFPHLEKSHHYPKDKLKD >gi|311091860|gb|AEKJ01000015.1| GENE 17 16325 - 17467 986 380 aa, chain - ## HITS:1 COG:SPy1011 KEGG:ns NR:ns ## COG: SPy1011 COG0628 # Protein_GI_number: 15675014 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pyogenes M1 GAS # 1 379 1 378 393 232 34.0 9e-61 MELKNKKDNAKSIFNSWIVNNRFSIFLLNTLLLFLTIFIFNKIAFLLTPVLTFVNAIMPA VILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFIVVLIILILIINTLLPVIEAQTKSLI DHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILFNTGKASFNLFLENLFGAV NVISMLIVTLLTAPFILFFMLKDGKKINPYLTSFMPPRLQNVFSKLLHDMNIAVSSYVRG QLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIPYFGTLISLIPAIIIGILDSPVM LLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILLLIGANSVAGLLGVIFAIPIYAG IKIIVVQVFDYYRKNSSLYK >gi|311091860|gb|AEKJ01000015.1| GENE 18 17477 - 17857 516 126 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1348 NR:ns ## KEGG: LGAS_1348 # Name: not_defined # Def: glucitol/sorbitol PTS, EIIA # Organism: L.gasseri # Pathway: Fructose and mannose metabolism [PATH:lga00051]; Phosphotransferase system (PTS) [PATH:lga02060] # 1 126 4 129 129 156 60.0 3e-37 MKWMATIQKIGVEAISKNENMVILFNETANEKLSRVAVIQKFDKETPVSSFICKKDDTVT IDGETYLVLHVGRMVADNMHAIGHCVLFFVDKLPEKTLHNAIYLQKDDEEPMPQFKQGDW ISYEHR >gi|311091860|gb|AEKJ01000015.1| GENE 19 17993 - 19012 1182 339 aa, chain + ## HITS:1 COG:L11851 KEGG:ns NR:ns ## COG: L11851 COG2706 # Protein_GI_number: 15674136 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Lactococcus lactis # 2 338 4 341 341 257 39.0 2e-68 MKVLFGGYTDHASQGLYEAFLDQQNPNPSITNLKNIIQLQRPTYFQTDGSLLFTISQNDN QAGIASYRLIGQNYVQIDAFYHPGAAPCYLALSKNKKLIYTANYHLGTLSIFQYDEQGHL QFISSCQHTGHGKLKEQDAAHPHFFNQTPQGNLVSCDLGLDRLDFYTFDGNQLKHVANYQ MEAGFGTRHVRFSVDGHYMYVVGELSSKVNVIQIDETNWNFAEIDSVKTIPESYSEHNGA AAIRISNDDKFLYVTNRGHDSIAIYRILANHHLDLIQRIPVYGAFPRDFNFNSQQNLLVV ANQNSNNATLYKRNQKLGTLVPIQKDFYVPEPTRVIILD >gi|311091860|gb|AEKJ01000015.1| GENE 20 19021 - 19854 839 277 aa, chain + ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 3 273 1 278 284 265 52.0 5e-71 MLIDIVKAIILGIIEGITEFLPISSTGHLYLADYLVKLNQPSSFINMFMVVIQLGAILSV ILIYFDKLNPFSKNKNKQKRKETWNLWFKVVVAVIPAAVIGLPLNDWLEAHMSTWPVIAS TLIVYGILFILLENYCQHNQANITKLGSLSYQMAILIGCFQVLSLIPGTSRSGATILGAL LLGASRYVSTEFSFFLAIPTMFGASLLKLVKFFAKGHSFHGDQLIILLVGMLVSFLVAYA SIKLLLKFIKNHNFKSFGWYRIALGIIVILAGLSHLI >gi|311091860|gb|AEKJ01000015.1| GENE 21 19895 - 20818 250 307 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 50 294 40 280 285 100 32 3e-20 MPSLDMSMTKNANFYKLVYREKRPQKVADFLLTKGFSKRSLINCRHRGGNVLVNHRRRYN NYLLHDGDEVIFILGNEKPNATLKFSNLPITIVQETANYLIVNKEADLLTIPSKNEDNDS VVGRLLHYLNPDALLNIKPHIITRLDRDTSGLVLVGKNAVAHARFNVSDKQRTIKKYHAI VHGNFSPSQLQGVIDAPIGKKDDPIKRYIMEGGKDSVTKYRVIKQVAGASLVELQLLTGR THQIRVHMQYLGHPLFGDHLYGVEDDFPRQALHCFLLAFDDPLEHKRIEVQIADPADMLQ LWQKLSK >gi|311091860|gb|AEKJ01000015.1| GENE 22 20790 - 21596 856 268 aa, chain - ## HITS:1 COG:SP1098 KEGG:ns NR:ns ## COG: SP1098 COG0061 # Protein_GI_number: 15900966 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 264 7 268 272 265 51.0 5e-71 MKVAIVGNEQVKTQAVVKSLKRLLSQKQIDIDVENPDVVLTVGGDGTLISAFHKYENLLD QVRFIGIHTGHLGFYTDWRNFEIDKLVENLADKQPSTASYPLLELLITDKDHHKEKLLAI NEATIKRLSKTLKADVYIRDQFFESFKGDGLCVSTPTGSTAYSKSLGGAVIHPRLKALQM TEIASINNRVFRTLSSPIVISPDEWITIKPEINDDDPCVITVDGNKYNHSHIEKIEYRIS QHVIRFDKFQHTHFWNRVEDAFIGHEHD >gi|311091860|gb|AEKJ01000015.1| GENE 23 21596 - 22222 668 208 aa, chain - ## HITS:1 COG:SP1097 KEGG:ns NR:ns ## COG: SP1097 COG2357 # Protein_GI_number: 15900965 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 3 200 4 201 223 241 60.0 1e-63 MQDWDLFLWPYREAVSELKIKLRALRESYLIKGEHSPIEFVVGRVKTVDSIKEKMERRVI PSDVIETDMQDIAGIRIMCQFVDDIYQVVELLHNRHDMHVIEERDYIQNAKPSGYRSYHM VIEYTLFLPDGPKNVIAEIQIRTLAMNFWATVEHTLNYKYQGKYPDDVSKRLKSAAEAAY QLDEEMSSIKDEVREAQRIFTQTKGKEQ >gi|311091860|gb|AEKJ01000015.1| GENE 24 22300 - 22914 659 204 aa, chain + ## HITS:1 COG:L164461 KEGG:ns NR:ns ## COG: L164461 COG4116 # Protein_GI_number: 15672342 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 167 1 159 197 59 33.0 4e-09 MSKNIEIESKILLSQKLYQQIITSFTKKAKFEQSNYYFDNQQQTLKKDAISLRIRLYHDH AEQTLKVNPSHKKQNNFQEVIEINDDLNLAEAKYLVNQAQQIMTTGQIANYLQQNYNATL ISTLKPQTWSQTNRTLLDGPYHCELTLDKTCYPDGYSDYEMEIENPDPATIQKVLDQLKE QFNLTYDDDQINQSKIKRAYLHKK >gi|311091860|gb|AEKJ01000015.1| GENE 25 22979 - 23596 576 205 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1382 NR:ns ## KEGG: FI9785_1382 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 172 1 175 201 144 41.0 2e-33 MFELFFFVNPIGGTCHECEKIAFHTMQQYNKKYNYHLIPMASMPSIIDALKNNKGNYDLN LFNQFSGDTFNAIKDFHSIKLLKGNKLAKQFVLNLQEMVNIQKCKYSEELVLQLINNFDI SAKTFKEMRQSEYVNMSIDEDLKLINTFNIKVTPTIIIYNYAKDEAGYLFEGKLEINCLK KMFQKPQPQQNKKIALSLHVLKNIT >gi|311091860|gb|AEKJ01000015.1| GENE 26 23589 - 24458 634 289 aa, chain - ## HITS:1 COG:SPy1395 KEGG:ns NR:ns ## COG: SPy1395 COG4469 # Protein_GI_number: 15675318 # Func_class: R General function prediction only # Function: Competence protein # Organism: Streptococcus pyogenes M1 GAS # 9 201 3 200 320 73 31.0 5e-13 MYAALVNEKLVTAYEEYSLLPNYQQLNTKIYRCPRCKKRVILIVSQSKAPFFKHYNVSQG KGEKEEHALSKQMLCTALVGAGYHAKMEVNLAYRQLRADILMQNSISFEIQCSPISDIEF DHRHNLYEKIGIKDVWVVGRRHFLHQQLRESQKKFLRFNQQWGWYYLEINPYEADISLKY NILLSPISRKLKYQIKQFSLDDLGIKQFFNFVPYLKRYSLPDVQFQRQYLHKKIQQKTGY GLQVAQLLYENRKSVEDIPVEILTQYYLPKQSCPLVQYLQKIAEDIETK >gi|311091860|gb|AEKJ01000015.1| GENE 27 24536 - 25297 979 253 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0516 NR:ns ## KEGG: LDBND_0516 # Name: not_defined # Def: negative regulator of genetic competence, sporulation and motility # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 253 1 247 249 106 28.0 1e-21 MKINRINENVIRVEISNDEIAEHGLSVLDFIKRTDKVRDFLMGIAKEVYGKNDDNDEEKH EEDLVSFEVMPSSEGLAIRIVRSPLSRDLDEDNSADDESSFVEDDDDEESEEDSHSGCYY RKYHPEEFEDENDEDEEDDDDSTGMLEDFHRIYSFADFDDLVAFMDVVHVADLASSLYFF EGKYYLQMEFIDDLTLSEPQQIWALANEFGTRLEAKVFRARLVNEKFAMVKHYGICIYRR DAISQFKENFFAK >gi|311091860|gb|AEKJ01000015.1| GENE 28 25388 - 25786 436 132 aa, chain - ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 131 1 131 131 157 60.0 5e-39 MIKLYISPSCTSCRKAKAWLTKHNLAFDERNILIQPLTKNEILNILRLTEDGTEEIISTR SKIFKKLNVNLDQLSIDQLLDLVVKHPSLLKRPIIMDNRRLQVGYNVEDIRRFLPRSVRK MELIRANAIISL >gi|311091860|gb|AEKJ01000015.1| GENE 29 25920 - 26498 316 192 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00174 NR:ns ## KEGG: LCRIS_00174 # Name: not_defined # Def: RNA polymerase sigma factor # Organism: L.crispatus # Pathway: not_defined # 29 191 1 162 163 100 38.0 2e-20 MFRHQIILHVKLFLHKRLWPYQKKEVIQMIKSQNFIKAWNNKKLVAGVLKTIGVQRQYHN YEDLLNEGIILYAECLESLDTVQLAEKDKDKIAFTKIKWRIIDQLRKHKKYNEQQNIADH PQINFIIPQHDNFLLLEDEIKSMSPTERLIFIQHWIKNKTITEISQQYNLSRSTLQRNKA ALRIRLREKLQD >gi|311091860|gb|AEKJ01000015.1| GENE 30 26560 - 26985 328 141 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1700 NR:ns ## KEGG: FI9785_1700 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: Metabolic pathways [PATH:ljf01100]; Biosynthesis of secondary metabolites [PATH:ljf01110] # 11 136 2 136 139 105 43.0 7e-22 MQNYEEIIFNNLEKRKVIINQEKTDQEIIAQALKCNNLSQMMEWRIDYYEHATEIDRLLA LSQQIHQQAPQLQILTTFRSQKLGGKTELCSEDAYLNLVELLINFNFGTAIDIELDHTPD RVNDLIKKAKNKHLLIREYHN >gi|311091860|gb|AEKJ01000015.1| GENE 31 27022 - 27882 888 286 aa, chain - ## HITS:1 COG:no KEGG:LJ1019 NR:ns ## KEGG: LJ1019 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 10 282 12 279 283 118 28.0 3e-25 MNKRQLKTKLPYKDKTYQWSKEIIREKLHFASGSELLQYVVHMDNYAVSAMMMAMYDFDK DPLEGKYKAVIFDQNHGIVLSTRNTRQIIGDFLNNEIFEYQLGLAVQKKIARSMNLNRYH ALSFNKFAFFSLKGFTNGKTSWLNLSALTEFSLHRRDARFTSVEVNGSRHIFCFDKVVAN LDKVLSEAITHNLVVKRGLLAYESKLMGRPVVSGREKKSLLNDSQYFAYEIMPKCDANYL VSMSKGIWHDIFLLFGKRLFKLLEINWNYEDYKEAYKHNNRINYLR >gi|311091860|gb|AEKJ01000015.1| GENE 32 28017 - 30173 2528 718 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872536|ref|ZP_07732604.1| ## NR: gi|312872536|ref|ZP_07732604.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LEAF 2062A-h1] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LEAF 2062A-h1] # 1 718 1 718 718 1209 100.0 0 MKKERLDKFSIRKLTVGAASVLIGVAFGATTVSAAPTVPQAPATGQQAAEVIELKDVKFT FKMGDKSATTRAVTIYATKDGHYGFEKDAAKCTSTAAQIVSTFLDSVSDDAIKNAQGVAY PEKIVAGENTVELAAQHASNKVEHSDADLQKEAEKKADELTNSPAFFKAELKDAEHDLQV AKDTVAQAEQEGSLSQEEMAKLQDDVAKAEAKVNELKNSSAFVEVQLKDAEHELEVAKDA VAQAEQEGGLSQEEMGKLQDEVAKAEAKVNELKAKVTPEPKPEPKPEETTYHFQYDDKKG TSIRQDYAAASQDAAEMHFTEYAIANGLDLDYQYLSYDAASHTFVYKDFESKKGEPEVQP ELPVAPMPKTVYHFQYDDKKGTSIRQDFAAVNKEIAEMHFKEYATESGLVLDDAHFAYNE ANQTFVYKDFESEKGEPEVLPVPAADVLAEAKNVAHAEFTKAGITGKIFHDAIDAAKTVE GLQAYVAETLAAHKTPAVDALAEAKKAAHEEFTKAGITGKIFHDAIDAAKTVEGLQAYVA ETLKAHKTVEPVTPTPAPVVSGETGIGYLNLDMLSDGFTGTLYVPVVGKDVNCKVRLLDD AGKYTNDYVVTDTTVKALASKVVNGVTFYKVAENRWIPAKFAEVLSDKEVAFKGVAKTFV KGHANYAVAMLDADGKYTGKFLKQGSSFKVFAKKVINGHLCYRLGTQAQWVPARFLVF >gi|311091860|gb|AEKJ01000015.1| GENE 33 30355 - 31659 1784 434 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804647|ref|ZP_07698712.1| ## NR: gi|309804647|ref|ZP_07698712.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LactinV 09V1-c] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LactinV 09V1-c] # 1 434 1 433 433 619 99.0 1e-175 MKKEKLNKFSIRKLSVGAASVLVGVALAGGATTAFAADGTSANTQATAVKTEKSAVVVFK TADNKLVGYTVVKGLPTEANVKSDVPDGYNLVTPVKYNSVGTADKPEYEVAVVEKSLVEK VAAERTKRAGLSYEDITKKHDAKVKFDAAHAAVQPAKDALDAANDAMAEKDTAVEVSKAQ LALYKELLAKNPKANVGDKVATAQAEYVKAVSAQLAQSFATAKAKAEFVAAVRKEAEAKV AYEKLGGQLADLSAYNTLEVIAGKMDVVKAQAATAKKAVEDAKTALFKAKLEAAEKTDPV ELIVAKFALEDATSALNNALATYNAYVARLNTLKTYFDEVHKTALVSTKAVTPSAAETPV AEAAEVAFSGVAKTFVKGHPNYAVAMMDANGVYTGKFLKQGSSFKVFGKKTIKGRVCYRL GTQSQWVPAEFLVF >gi|311091860|gb|AEKJ01000015.1| GENE 34 31963 - 32625 572 220 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1773 NR:ns ## KEGG: LGAS_1773 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 29 218 100 289 293 192 50.0 9e-48 MKQNRESIIRENLHFRDNLHFLLDIDDPRTHYALRVVQMIATIIIFLLTYLQHVVVINFQ SAGANDALTMFQGIANQSNNYYFNQGSNLFSFLNRLMGGNLWSTYRYAINSSQFMQDPVG LKIMIWSFLLILISAFCILTHFFKEPYVYRYSLAGAIASSIFLILTPLLIHHWANQFAIN KHISLWQANQIFSVDCLAYFAIFCSLIVLSISIVRFYKHF >gi|311091860|gb|AEKJ01000015.1| GENE 35 32868 - 33968 1506 366 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 48 363 155 438 444 117 30.0 2e-26 MHISKSEWLGVAVCFGALASMPNTVVKNSPVAMTTVKADTSYVEDKSYGVDVSSFQGTDM SNYAQNGAKYAFVKTTEGTWYTNPKASGQVSSALANNMMTMSYHFAVFGNDAQKASAEAN YAVNASRNVGVPAGSYVVCDWEAGDGNNINGPVEANTDAILSFMDTVNANGYKPMLYSGA YLMRNKIDTARVVAKYPNSLWVASYATMGRIDEPDFDYFPSMDGVAIWQFTHNWRGLHVD GNINVLPLSKGGVSQAPSSAPATPSVDINQVIASASQNVAQKEQAAITSTTTDTNQDVPF TAVGRVNYVPGYGIMLWGQPGYKNALNRYLPHGSRWKIFKKRYINGSVYYNLGGSQWVDG KYIIIE >gi|311091860|gb|AEKJ01000015.1| GENE 36 33980 - 35284 1446 434 aa, chain - ## HITS:1 COG:SA2437_1 KEGG:ns NR:ns ## COG: SA2437_1 COG1705 # Protein_GI_number: 15928230 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Staphylococcus aureus N315 # 27 191 306 472 502 133 45.0 6e-31 MNRSTITSAVTAILIAGAGISVDNILNTNSQTHQVVDATTQQEFLNKAIPAATKASSKYG TYTSVMLAQAILESNWGNSQLAQEPNNNLFGIKGSYQGNSVSFSTSEFSDDNGYYTVDAN FRKYPTYHESFDDNGNLLRNGLNGYYSDTWIENAQSSSDATNGLQGKYATAPDYAQSLNK IISQYDLTKYDPKITDVNERKVIQKTCSVTSAPVEFSVGKLVKTLHRGDVVDVTKYIAYG NGVKYALTNYGWIDAIAIVPIVSQAPVARMSDASVVNKIVKINYIPKYGIAVWQKPAHHV VGKYLAHGTSWRVDRQISINNHLWYRVGTNQWIDSQYTIVTYDSKKVAEPKTQAPASPVS SAGRNEVAAHGIVTVSCGNYQKLAVVNAPAGKLTGKKLANNTRWRFFKIAKADGHFWYNL GGNQWVIADYVYEK >gi|311091860|gb|AEKJ01000015.1| GENE 37 35477 - 35743 346 88 aa, chain - ## HITS:1 COG:no KEGG:LA2_00960 NR:ns ## KEGG: LA2_00960 # Name: not_defined # Def: hypothetical protein # Organism: L.amylovorus # Pathway: not_defined # 1 79 1 79 89 68 46.0 1e-10 MTKTSKTLKLIFKNDHHKVSTLSLPYASVNLTEAEVKEVMDTIAKENIFAKEGVGLYTEP QAAQYVERTINPIFTTAKSKHPIAPAIN >gi|311091860|gb|AEKJ01000015.1| GENE 38 35780 - 35992 288 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312871542|ref|ZP_07731635.1| ## NR: gi|312871542|ref|ZP_07731635.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] # 1 70 1 70 70 122 100.0 6e-27 MKTRTVSQKVEYIFINPKYDEGEKVFTFKNLKPDADYASVVNVGKAIAKLHKGDSFKNAT LIQSNEIIAE >gi|311091860|gb|AEKJ01000015.1| GENE 39 36191 - 36625 539 144 aa, chain + ## HITS:1 COG:no KEGG:FI9785_219 NR:ns ## KEGG: FI9785_219 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 144 1 139 139 155 59.0 3e-37 MTEDLKNTETEETTEETTEDQFEVVVPEPNRVEMPATEYKEYPDYLNVFANFYIAKFEQA DLEIMAAFDGNHDIIEINTYILANEAFGRRNLIKHVLNIHAQNFENILANIKAKTGLAVE SVRTFDEWNDWYSERRNNISQTLS >gi|311091860|gb|AEKJ01000015.1| GENE 40 36738 - 38810 2433 690 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 7 650 10 647 666 661 53.0 0 MNDKLKNRLSIAGLLITIGIVYGDIGTSPLYVMKSIINANGGLVNINRELIIGSISLILW TVTLLTTIKYVLIALQATNHGEGGIFALYALVRKRAKWLVMPALIGGAALLADGALTPAV TVTTSIEGLKGMKLGQHIFVPDQKSVIFITIIILLLLFLIQRMGTDVIGKAFGPVMLIWF TFLGAVGFCNMIGDMSILEALNPIYAIKIMFSPANKVGFFILGSIFLATTGAEALYSDVG HVGKANIIGSWPYVFICLSLNYLGQGVWILHNPNYHAIGDLNPFFAIVPEQLRIYAIILA TLAAIIASQALITGSFTLVSEAIQLKFIPRMNIVFPSKQQGQIYIPSVNKMLAIATLSIV FFFKTSEHMEAAYGLAITATMLMTTLLLFEYLGQSNHSIFTRLLFVVIFALIETAFLISS LVKFVHGGYVTVLIAGLILGVMYIWYYGNKVRDLRENRNSYVRLDQYIDMLTRLSHDEDY PTYATNLVYMAKVKYNKFIKREVIYSILDKRPKRAKAYWFVTVNVTDEPFTNEYSVNTFG TKNVINVQLYLGFKQQQRVNIYLRQIVHDLIADQTIEAQPQEYTTTPGRDVGDFSFVIVQ DVVSPQTQLTNYEKNIIKARVWLQNLSSNPASWFGLDYSDTVIERVPLILGTRHKFYINR VPASKYSIIEKEKEEKKHMLAEYRKKLHNF >gi|311091860|gb|AEKJ01000015.1| GENE 41 38924 - 40108 1122 394 aa, chain + ## HITS:1 COG:lin2952 KEGG:ns NR:ns ## COG: lin2952 COG1473 # Protein_GI_number: 16802011 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 3 383 6 386 400 416 49.0 1e-116 MNLQDELLNKLKEDETEIIRIRRHLHEYPEISFHEKETATYIKKYYQQLGCPIHDCGDGY GFYIDIDSNTAGPHLALRADFDALAVQENNNLSFKSKHPGVMHACGHDGHTAYLMVLAKN LWQIKDKLRGKIRIIHQPAEEISPGGAISMLKDGVLDGIDQIIGLHLMSSMPTSMIGIHK GETQTGRASFEIKLIGKGGHASMPHLSNDAIVAGAYLVTMLQTIVSRRINPFDTASVTIG SFEGVGSFNAIKENVTLKGDVRIMKESTRKLVKSQIFQLVNGLQTSFNIKASINYDDNYP VLINNEQLANEAITALTKAKLPEVSTVMDPGPQDPSEDFSYFSQNIPGLFFYVGCMAADQ TNHPHHSPDFYVNENSLLIAAKAAAIITLHTLFK >gi|311091860|gb|AEKJ01000015.1| GENE 42 40167 - 40958 895 263 aa, chain - ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 254 4 259 269 89 31.0 8e-18 MLSYDFMQYAYLASSFIAITCAVVGVYVVARGFSFLAHTLSEIGFAGAAFAVFLGINPLW GMLLFTLLGSLCVGELSLRSEQKESAISAISALFIGLGVLFLAISHANSRYATDILFGSI IGVDLSGVIQLVLLSLVVILVILCIMSPLNYDSFDHIGAISHHLNTALVGAIFLMALGMS VAIGSQVVGSLLVFILLTLPASTARYLGKTIFSMLAWAVAIALIGVWLGLALGYYTNWPV TFFISMIEVLIYLLVYIGKLIKK >gi|311091860|gb|AEKJ01000015.1| GENE 43 40962 - 41615 191 217 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 13 190 31 226 329 78 27 2e-13 MCTILQVNNLMMKFEDRLIFDRVSFTLKKGSTTALLGSNGTGKTTLIKILMGMLPATSGD FQYSPKIKVAYVPQFRNLDADYPLSIRAFVELNMPLFKSKKDKAEINRILAETHLSQIQH LRMGAASGGQRQRAYLAQALLDRPDLIILDEATASLDPTAKEELMLLIKHLNEKHQMTVL FTTHDIMLAKKYMHEYLIFHNKTLIHGQMKDFAEEEI >gi|311091860|gb|AEKJ01000015.1| GENE 44 41638 - 42426 880 262 aa, chain - ## HITS:1 COG:ybiV KEGG:ns NR:ns ## COG: ybiV COG0561 # Protein_GI_number: 16128790 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 2 242 3 245 271 148 36.0 8e-36 MIKLIATDMDGTWLREDKTYDEAMFVRIFDLMQERNIKFVVASGNQHANLLTRFPNHVDK IYFVAENGAMIAQGKQILRIVDIPDDIYHVMLNIVDEMSYPSIVSGVTGAYILKKYGQEF YLGNYKYYKNLKQIDNYEEVDDRIFKVSIVVPPELMPTIIKDLRYRYPEIGFVAGSANTI DMSTPGMNKAVGLKYLSYKLGIKSSEMVAFGDSGNDVGMLEYVGHSFAMGTALPEAKKAA KHIIGSCDESAVQYKILDLLSR >gi|311091860|gb|AEKJ01000015.1| GENE 45 42567 - 43763 1263 398 aa, chain - ## HITS:1 COG:lin1939 KEGG:ns NR:ns ## COG: lin1939 COG0452 # Protein_GI_number: 16801005 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Listeria innocua # 4 389 6 390 399 311 44.0 1e-84 MSKIAIYISGGIAAYKSILVLRELQKQGHEVRVGMTANAQKFVGVQTFAALTHTTVLTDL WDNDHQTEIGHLELAQWCDLALVVPATANIIAKLANGIADDAVTTALIATDKPIIVVPAM NNKMWHNAALQRNIKQLIDDGMQVMTPETGYLAEGYQAQGRLPEPEKIVQFVNANLHCDS SLVGKKVVITAGATLEKIDPVRYISNFSSGKMGWAMVQAFLQRGADVTLIYGKVSVNIVP FARLTTIHVASAQEMLTVAKHEFSDADILVMTAAVADFRPKNYCPQKIKKNAGNDSYQLE LVKNPDILYTLAQSKNEKQLVVGFAAETNNLLANAHTKLSNKGADMIIANDVSQDVFGSD LNEVTIITKDAPDVKLPRMNKQKIAESIVNHIIKLNSK >gi|311091860|gb|AEKJ01000015.1| GENE 46 43886 - 47551 4239 1221 aa, chain - ## HITS:1 COG:SPy0099 KEGG:ns NR:ns ## COG: SPy0099 COG0086 # Protein_GI_number: 15674322 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 1 1189 1 1190 1213 1714 69.0 0 MIDVNKFESMQVNLASPNKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWTC SCGKYKGVRYRGIVCDRCGVEVTSAKVRRERMGHIELAAPVSHIWFFKGIPSRMGLILDI SPRALEEVIYFAAYIVIDPGDTELEFKQLLTDAEYRENKAKYGDRFQAKMGAEAIQDLLK QVDIQEEAKKLKEELKTATGQKRMRAIRRLDILEAFCNSGNKPEWMIMDCIPVIPPDLRP MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPRIIVQNEKRMLQEAVDALIDNGR RGRPVAGPGNRPLKSLSHMLKGKPGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP MALELFKPFVMHELVKRGLASNIKNAKRKIDREDDDIWDILEYVIKERPVLLNRAPTLHR LGIQAFEPVLVAGKSIRLHPLACEAYNADFDGDQMAIHLPLSDEAVAESRLLMLAAHHIL APKDGKPIVTPSQDIVLGNYWLTQTERGREGEGMIFNSPEEATIAYENGDIHYHTRIGMA ADSMPEKKWPEGYEHGIFVTTYGKLVFNALFPKDFFYVNEPTQENLTSPLAEKYFLKPGE NIHDKLDSLPLGKAFKKGFLADSIAQIYKLYRVQRTSDYLDDLKELGYTVCTTSGLTIGV EDIPTLKDKDDIVRENRQKVDVISKQYRRGLITDEERHDRVISIWNNCKDTIQNELAGLF DPRNPISVMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEIPVTSNFREGLTVLEMFMST HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREEDCNTDRGITVSAITEGDEMIEPLF DRLVGRYTSKSVIDPTTGETICPANVMMDEDMAQKIVDAGVTSVTIRSVFTCNTQHGVCQ KCYGMNLATGEDVEVGEAVGTVAAQSIGEPGTQLTMRNFHNGGVAGANDITQGLPRVQEL FEARNPKGRATISEVTGEVTSIEEDPAEHTREITVKGQTDTRTYSVPYTASVAVAEGDQV ERGQKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIADKHVEVMARQMLQKV RILDPGETDILPGELMDIGEFKARNKDVIISGGIPATAQSVMLGITKAALETNSFLSAAS FQETTRVLTDASIRGKSDPLLGLKENVIIGKIVPAGTGMPIYRKMEPKADIPAENLPEKE NESDSKEKSVYAQAQSTGSEN >gi|311091860|gb|AEKJ01000015.1| GENE 47 47570 - 51250 4163 1226 aa, chain - ## HITS:1 COG:L0137 KEGG:ns NR:ns ## COG: L0137 COG0085 # Protein_GI_number: 15673782 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Lactococcus lactis # 4 1160 1 1156 1196 1673 69.0 0 MFSLLGHAVNYGSHRTRRSFSRIKEVVKLPNLTDVQTESYKWFLKEGIREMFDDIMPISD FSGKLSLEFVDYKLLKPKYTLEEARDHDANYSAPLHVTLRLTNHETGEIKTQDVFFGDFP LMTDSGTFVINGAERVIVSQLVRSPGVYYHCDYDKNGRPIYGTTVIPNRGAWLEYETDAK NLAYVRIDRTRKLPMTVLVRALGLESDSDIQDFFGKSDSLSFTLEKDMHKNPADTRVAES LKDIYERLRPGEPKTTDSSRSLLYARFFDPKRYDLAPVGRYKINKKLSLKNRLLRQTLAE TLADPDTGEIIAKKGTVVTHELMDKLEKYLDRDDFKTVTYQPSEEAVLPDPITVQEIKVF SKVDPERVVKLISNGHIGEDVKHITPADVLSSINYFFALQDGLGSIDDIDHLGNRRIRRV GELLQNQFRIGLARMERVVRERMSIQDIATVTPQQLINIRPVVASVKEFFGSSQLSQFMD QNNPLGELTHKRRMSALGPGGLSRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSMA TYAVVNKYGFIETPYRRISWETHKVTDKIDYLTADVEDNYIIASANAPLNEDGSFKEKIV LARHKEENLEVSPDKLDYMDVIPKQVVSVTSACIPFLENDDSNRALMGANHQRQAVPLIN PHSPLVGTGMEYRAAHDSGDAILAKAAGVVEYVDANVIKVRRDDKTLDEYVLEKYRRSNA TKNYNQTPNVHCGEKVVEGEVIADGPAMENGELALGQNPIIAFATWNMYNYEDAVMISER MVKDDVYTSIHIEDYESESRDTKLGPEEITREIPNVGEDALKDLDEDGIVRVGAEVQDGD ILVGKVTPKGVTDLSAEEKLLHAIFGEKAREVRDTSLRVPHGGGGIIQNVRVFSREAGDE LAPGVNKMVRVYIVQKRKIQVGDKMSGRHGNKGTIALVCPEEDMPYLPDGRPVDICLNPM GVPSRMNIGQVLEMHLGIASKHLGVHVATPVFDGASEEDMWNMVREAGLGKDGKTVLYDG RTGEPFHNRVSVGVMYYLKLTHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEV WALEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGEKIPKPGVPESFRVLVKELQSLGL DIKVLDSDKNEIELRDMDDDSDEHLNIDSLSKLAEQQEKKKLAEEAEEQEAEETDQVDEQ SNFDESDEEEDFDDLEFPTSNDEVSD >gi|311091860|gb|AEKJ01000015.1| GENE 48 51453 - 53876 1945 807 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 798 6 806 815 753 49 0.0 MNIPYSENAKKVLDIAQQKATMLKHAVISTEHVLLAISTMEECSAYQTLKKYKVTESRVE NIINEFYSGYGETVVTEEYCIFSPRLKKVLQCAQRLALVLKQDTITTNILLMALIKEKEL TSRLILSDNCGIDIKELLKVLRYTISKANSVNSKKHSSTPALAKVSVDLTRQALRGMIDP LIGRTKELKRVIQVISRRVKNNPMLVGDPGVGKTSIAQGLALAIVNKEVPVNLLNKRILS LDLASLVAGTKYRGDFETKMKTIINEVRRDGSIILFIDEIHTLVGAGGAEGAINASNILK PFLSRGEIQVIGATTFDEYQKYLEKDPALARRFQRIKVGEPTAKETLGILQGLKSKYEEF HNVNIEADALKEAVDLSVRYISNRFLPDKAIDVMDEACSAVKIKHNATEKDSSGELKVQI ADLAEQKQNAVIAQDIAKAGQLYRQELQLKAKLQKMLQQKNTSKPKRPLVTVDQVEKVVS ELTGVPVTKMQRQESKRLAKLESILHQRVIGQNLAVEAVSRAIRRSRSGIKDLNRPIGSF LFLGPTGVGKTELAKALADAVFGSEKNIIRVDMSEYMDKVAVTKLIGSAPGYVGYEAGGQ LAEKVRRNPYSVILLDEVEKAHPDIFNILLQVLDEGFLTDSKGRKIDFRNTIIIMTSNLG SRSLKDDKTVGFATSNQDINGVIKEKVSAATKNFFRPEFLNRIDEQVVFESLDKKQIRQI VVLMINQLVQRLQEKKIELKITTGAMDILAKDGFDPEMGARPLRRAIQHKVEDVVAKYLI SGELHEHQILKLSAKNGKLTFAISDNK >gi|311091860|gb|AEKJ01000015.1| GENE 49 53959 - 55137 1117 392 aa, chain - ## HITS:1 COG:L56488 KEGG:ns NR:ns ## COG: L56488 COG0436 # Protein_GI_number: 15672039 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 4 390 3 390 391 325 44.0 1e-88 MSKLSENVHSTLNQIPKFKLFNFSQYALKFPDVIQLTLGEPDFNTPDHIKLAAIKAIINN HTRYAPQRGIPALLNAISADVEQKLGLHYDPKDEIIVTNGVTEGCYATIMALANPGDIFL LPTPGFPMYVADVAIAGAEIVEIDISKDNFKLTPQLLQKYLDKYGDRVKGLIMVNPSNPT GVAMNQAELDALADVIRGKNIFVISDEIYNCLWYEDEIGSIAKALPEQTIMFNGFSKTYC MTGWRIGYICAPREISAQIFKVHCFALTDTVTFVQDAAIEALVNGQDDCLPMKKAYIERR DYICDALAKMGWEHPFPQGAFYVFAKAPEFLEQDDEKLAYDLINNAKIAVAPGSYFGKGG EHYLRFSYAISLNDIKIAMERLKKYTAERKLQ >gi|311091860|gb|AEKJ01000015.1| GENE 50 55255 - 55764 473 169 aa, chain - ## HITS:1 COG:SP1597 KEGG:ns NR:ns ## COG: SP1597 COG4720 # Protein_GI_number: 15901437 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 160 1 151 153 77 33.0 2e-14 MKSKRIKLNVFTALMIAMSVVLGRCFLIPIFWTRGNINLCDAGIMLASLILGPFYGALVG GISGMLLDLISGYAQFAIFSLIAHGLEGLVIGFIYFKLKNRTWSKYLALFFGSVVMIAGY VVADSYLYSLKAGWLGIGTNILQALIGAIVSLSLYFALSKKIHNIFEIN >gi|311091860|gb|AEKJ01000015.1| GENE 51 55754 - 56629 775 291 aa, chain - ## HITS:1 COG:SPy1209 KEGG:ns NR:ns ## COG: SPy1209 COG2240 # Protein_GI_number: 15675173 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 273 1 270 288 113 26.0 5e-25 MQKMLIIEDLSALGQISMVSAISVATIMNVKPALLPTIILSTQSEGFGAPVSLTLEQWQN KAIEHWNSLEQEFDTMMIGYIGCISGVQNILSFLPLIRKKKLVVDPAMADQGSLYPNLPL TYPSMISTLCQYADVIVPNLTEACLLAQVDYANDSLNQSKLNQLVDKLVQRFPSTEIIIT GVPLANKLAVVYVNKQNIASSMIWSVESIARHFYGTGDIFTAIVSACLAKKMSTKKAVKI AINALELAVKDSAQLTDHELLYGLKMTRLQEYLLDIEGNELDIEGNEIDEK >gi|311091860|gb|AEKJ01000015.1| GENE 52 56607 - 56834 346 75 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYCGSSSVVEHHLAMVGVAGSNPVFRFVLEPHIFVRLFVREMAQLGRALRSGRRGRRFKS CFPDRGRFYAENAYN >gi|311091860|gb|AEKJ01000015.1| GENE 53 56881 - 58377 2016 498 aa, chain - ## HITS:1 COG:SP0713 KEGG:ns NR:ns ## COG: SP0713 COG1190 # Protein_GI_number: 15900610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Streptococcus pneumoniae TIGR4 # 1 487 4 491 491 652 66.0 0 MNDQLIVRRKKMDELRAMNVDPFGEKFDRQDLARTLNEKYIQEDKEELNDDMPQTRVAGR MLAKRGKGKVGFADIYDRTGKIQIYVRKDIVGEENYQIFKQADLGDFLGIDGHVMKTDTG ELTIRASHITFLSKALRPLPDKYHGLQNVEQIYRQRYLDLISNQDSYKRFLNRTKIIQAI RDYLNSLDFLEVETPVLHNIPGGAEARPFITHHNALDINLYMRIALELPLKRLIVGDMER VYEIGRVFRNEGLDTHHNPEFTELETYCAYWDFHDVMDEAEGIIRAAAKVVSEDGKINYQ GTDIDLGKSFRRVHMVDLIKEKSGVDFWQPMTDDEAKKIAEEHGIQCEKFWKVGHVINAF FEEFCEGTIVDPTFVYGHPVEISPLAKKNKKDPRFTDRFEIFILGKEYGNAFTELNDPID QRQRFEAQMAERAAGNDEADMIDEDYIRAMEFGMPPTGGLGIGIDRLVMLLTNAPAIRDV LLFPTMRPERFDDLDNEE >gi|311091860|gb|AEKJ01000015.1| GENE 54 58410 - 59405 480 331 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 3 331 26 350 353 189 31 5e-47 MSKSWKIRDVVIPNQVVVAPMAGISNAAFRMVCKQFGAGLVVCEMISDHGIIYRNKKTLE MMKIDPNEHPMSLQIFGGSEETLVEAARYVDDNTHADIININMGCPVPKVTKTDSGAKWL LDPDKIYQMVKAVVNNVQKPVTVKMRTGWDEDHIYAVENALAAQEAGACAVAMHGRTRKQ LYTGHADWGILKEVSDALTIPFVGNGDVTTPQLAKKMLDEVGCSAVMVGRAVLGNPWILK EITHYLDTGELLAPQTVEERVTTCKEQLRKLVELKGEKIAVPEFRRQAAYYLKGIPRSAR TRAKINDVWTQQEVYNLLDEFVEKFESKLDK >gi|311091860|gb|AEKJ01000015.1| GENE 55 59485 - 61530 1223 681 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 16 656 14 630 636 475 42 1e-133 MKNKRNRLLSNGLFYIFIFVILLSGINWALGGSDGNGTTKNIRYSDLIKDLKNNKIKSIN IQPANGAYTVTGTYRKPQALDKRGGTRFDFFKNSNKPVGATKFSTTMLQNDSVVKKVSDL AQKHGVAFSGQGESQSGNWISTAVMLIPTLIFIVMLWMMMSQGGKGGRGMMNFGKSQVKP RDPSKNKIRFSDVAGEEEEKQELVEIVEFLKNPAKFTKLGARIPAGVLLEGPPGTGKTLL AKAVAGEAGVPFYSISASEFVEMFVGVGASRVRDLFDNAKKTAPSIIFIDEIDAVGRKRG NGIGGGHDEREQTLNQLLVEMDGFEGDEGVIVMAATNRSDVLDPALLRPGRFDRKVLVGC PDVKGREAILRVHAKNKPLANDVDLKEVARQTPGFVGADLENVLNEAALVAARRDRDEIT ASDIDEAQDRVIAGPAKKDADISEAQRKRVAYHEAGHAIVGLVLSDSRTVRKVTIVPRGR MGGYNIMLPKEDQAISTKKQLMEQVAGLMGGRAGEEIVVGDQSTGASNDFEQATAIARGM VTQYGMTEVGMSQLESANTQDQMVKPYSESTAEKIDLAIKNILDEGHKVATDIINTHRDT HRLIAEALLKYETLNEKQILSLFKTGKMPEENDYPSEKDALNYEETKEALKRKEDKFLES DSEDQKGSDDAEDSEDPKTND >gi|311091860|gb|AEKJ01000015.1| GENE 56 61614 - 62906 1026 430 aa, chain - ## HITS:1 COG:BS_yacA KEGG:ns NR:ns ## COG: BS_yacA COG0037 # Protein_GI_number: 16077135 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Bacillus subtilis # 1 254 1 260 472 147 35.0 5e-35 MKKIINFFSKYKLSLADKKIILAISAGPDSMALLDMMRQIVDDPQSQLIICHVDHCLRND SYLESEIITKYCQQYQLQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTA HHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLA YVVDYTNQENETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYH KLLNGIVQVNAADLSDFNCQQLSLYFNWLIDKEWGRQVYFESLDLSDNVQNTKDHFTLVK YLSHFYICPSDIILLKNHQQEVVLDQCFSWLKTKYIITLNKLDLPEVGYFYANKTSKFIA RNVQATDRFKLPNGSHVKPKKKFAEKKIPTFMRNTYLAILINDDIVFVQDIFKNQEYNIN YQRYNIYTLF >gi|311091860|gb|AEKJ01000015.1| GENE 57 62937 - 63275 481 112 aa, chain - ## HITS:1 COG:no KEGG:LJ0280 NR:ns ## KEGG: LJ0280 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 112 1 114 118 78 40.0 1e-13 MKYLVGLRVSAQVDQVIASGIKVILNNGRRGFIHWRDFGPLWDLKKNSFTKGQILRLVIV AINEKGEILLSLNRVNESTLVDPTNPFNKSYDFAGTLKCLLKEAEDLFNQFN >gi|311091860|gb|AEKJ01000015.1| GENE 58 63275 - 63649 318 124 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0273 NR:ns ## KEGG: LGAS_0273 # Name: not_defined # Def: septum formation initiator # Organism: L.gasseri # Pathway: not_defined # 7 122 8 123 125 97 49.0 1e-19 MSRIHHYNFLSPEEQEQRIIRKAEKQRKKIHRLRKRKIVIGFGVIFIIILFQLIMARIQT NKINNQVYSLKKELYTKQALHKKLKAESYDLKDLDYLLKVIRYKYYYSKPGEFIYNIQDK KDSN >gi|311091860|gb|AEKJ01000015.1| GENE 59 63732 - 63974 375 80 aa, chain - ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 79 17 95 105 73 56.0 1e-13 MRIDKFLKVSRLIKRRTVAKEMADQERVLVNGRQVKSSYNVAINDIIEIQFGVKALKVKV LNIKETTKKAEASDLYEVVE >gi|311091860|gb|AEKJ01000015.1| GENE 60 63988 - 67320 3800 1110 aa, chain - ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 24 1059 26 1122 1177 947 45.0 0 MKLSELIAADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENR AQQIYSSLVELFEENMVHFFPVEPLLETQAAVSSLDELSQRLDAMSFLLTKQKGIVISTP QALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFALRGDILD IYPINIAYPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQNEDYTTI LDYLTESGIICFDDIRAIRQNIVQIDARNRDYLAHETSTNIKNSRLDFTSIFNQIVQAKI YSSLFQVSVNDLKIDQLLNLHTREPQQFFSQMSLIKNELSVYELQQQTVIIQADNLVRAK QIKSTFADYGIDITIAAENKLIPNKRQIIVDNFNQGFVLPRISLVYLTEHDLFNRQPHIH KKIKSLENAQQIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGQKGDYITITYRNHDQL FVPADQLGVVQKYVASDGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRATEK GFAFLPDDELQRDFEASFPYLETPDQIKAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVAL RAAFKAIDSGKQVAFLVPTTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNL SNGKIDIVVGTHRILSRDIKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPI PRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNGQIFFLHNKI QDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPN VNTLLVENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTAL GSGFKIAMRDLSIRGAGNVLGKQQHGFIDSVGYDLYAQMLDQTIKQKRGDKVCHKTNAEV RINLEAYIPTEYISSQKQKIEFYKKIKHANNVKAIDDIADELIDRFGTYPKSVENLLNIA TIKVLADTAQILSITNIDEKIDIVLDQKASEELKGPNIFRTLEHVCFRARVSVDHDCLHV RLILDSKSSWRTIFNELKVFLQAVIDILHK >gi|311091860|gb|AEKJ01000015.1| GENE 61 67341 - 67898 544 185 aa, chain - ## HITS:1 COG:lin0245 KEGG:ns NR:ns ## COG: lin0245 COG0193 # Protein_GI_number: 16799322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Listeria innocua # 1 185 1 184 184 169 43.0 3e-42 MKLIVGLGNPGLKYQKTKHNTGFMAIDYYLKKNGLSFNKEKFEGFWIKTKIKGEDVILLE PQTYMNDSGKSVTQLVDFFKIDAHDILVIHDDMDMPVAKIRLRKSGKSGGHNGIKSIIHC LNDSEFNRLKIGIDHPTKETVVSWVLTPFSSDDCTKMAATFATVSQIIDDFIDNKSIEFL MNKYN >gi|311091860|gb|AEKJ01000015.1| GENE 62 68037 - 69008 1141 323 aa, chain + ## HITS:1 COG:L0017 KEGG:ns NR:ns ## COG: L0017 COG0039 # Protein_GI_number: 15673313 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Lactococcus lactis # 1 316 1 316 325 400 63.0 1e-111 MTEEKIHKVILVGDGAVGSSYAFAMVQQGIAQELGIVDIVKDRTKGDAIDLSDATPWIAP KNIYSAEYSDAKDADLVVISAGAPQKPGETRLDLVNKNLKILSAIVEPIVESGFKGIFLV AANPVDILTHATWKISGFPKDRVIGSGTSLDTGRLQRAIAELEHVDPRSVNAYMLGEHGD TEFPVWSYNNVAGVKVSDWVKAHPEVGENKLEEIHKTVADAAYTIINLKGATFYGIGTAL ARITKAILNDEHAVLPLSVSMNGEYGLHDLHIGTPAVVGRKGLEQVIEMPLNEDEQKRME ASAKQLKEVMDRAFKETGVKVRQ >gi|311091860|gb|AEKJ01000015.1| GENE 63 69148 - 69831 654 227 aa, chain + ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 210 1 210 211 236 55.0 4e-62 MLIKSLVYKKDYLTTVNEKATLAEALQILEDSGYRCVPILDDSGKLFRGNIYKMHIYRHK SQGGDMNLPVTYLLKNATKTIKVNSPFFQVFFNIKDLPYIAVLDEQDYFYGILTHSKLLG MLSDAWNIKNSSFVLTVLSDNERGNLVKMAKIISKYTNIASCLTLDVKLGELVRRNLFTL PVGVSNDTMKAIVDKLEKKGFVVAEIEDLQSGTILRSDEKPGQYLNK >gi|311091860|gb|AEKJ01000015.1| GENE 64 69908 - 71035 1132 375 aa, chain - ## HITS:1 COG:lin0885 KEGG:ns NR:ns ## COG: lin0885 COG0787 # Protein_GI_number: 16799958 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Listeria innocua # 1 373 1 368 368 328 44.0 2e-89 MISGIHRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGA QGLCVAILDEAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKKTSTFLS GTKLKIHLAIDSGMGRIGFNEDDAFLKANDYLLSHPEYDVEGMFTHFSTADCHDLEYFDS QVKKFDHFKKMLRIKPKYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQP KFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGFKV KVGDVYCPIVGRVCMDQFMVLLPEKMPVGTPVELISADAKAPNNIKAVADYANTIHYEIA CLLSDRVPREYLNKF >gi|311091860|gb|AEKJ01000015.1| GENE 65 71039 - 71401 301 120 aa, chain - ## HITS:1 COG:lin0884 KEGG:ns NR:ns ## COG: lin0884 COG0736 # Protein_GI_number: 16799957 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Listeria innocua # 3 118 1 117 118 101 41.0 3e-22 MLVLRGVGIDIVDLDRIREQIKKGDLFAKRVLTSKEFEQYQKYQENRQVEYLAGRFSCKE SFSKAMGVGLGTIVKFKEVEIIDNDLGQPEMIAKSYHGRIFVSISHEKRYLVTQVVLEDI >gi|311091860|gb|AEKJ01000015.1| GENE 66 71518 - 72981 1651 487 aa, chain - ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 438 3 440 516 555 63.0 1e-158 MKFSELNLKPELLKAIKRAGFEEATPIQEKTIPLVLSGKDVIGQAQTGTGKTAAFGLPIL QTLDKKQEGIQALIIEPTRELAIQTQEELFRLGRDENAHVQVVYGGADIRRQIRSLKQVP NILVGTPGRLLDHLKRRTINLSHLKHVILDEADEMLDMGFIQDIESILTFASNDHQTLLF SATMPKPILQIGEKFMHDPQIVQIKSKELTANLIDQYFVRLKENEKFDILCRLIDVQDPE LSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILVATDVAA RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSITFVTPNEIGYMKTIERLTRK KMTPLRPPSDKEAFDGQLSIANKKIQELLDSDLTKYTKEAEKLLENNSALDLVAALLKDM AKDAEQVKVEITPEKPLPFKNRRGNTQNFKRRYRSDDRDRNIKRHRKPNAQTRERNIKHN FVIKKKD >gi|311091860|gb|AEKJ01000015.1| GENE 67 72997 - 74364 1391 455 aa, chain - ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 453 463 335 40.0 1e-91 MKMQLSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGERDGHDYVANAVANG AVAALWQKDHANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEPLLQARAQKLNQLQATF GFNSTDTIYATNFNSYMHHASFAINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVE IAQALANFVPTANRMQWEKGDLGEAIMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIAVL GDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKDHM DRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL >gi|311091860|gb|AEKJ01000015.1| GENE 68 74503 - 74754 418 83 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628937|ref|YP_814109.1| 50S ribosomal protein L31 type B [Lactobacillus gasseri ATCC 33323] # 1 83 1 83 83 165 95 8e-40 MKQGIHPDYQEVVFMDSSTGAKFVAGSTLKPKETIEFEGKTYPLVRVEISSDSHPFYTGK QKFAQADGRIEKFNKKYGISSKN >gi|311091860|gb|AEKJ01000015.1| GENE 69 75068 - 76396 1068 442 aa, chain + ## HITS:1 COG:NMB0388 KEGG:ns NR:ns ## COG: NMB0388 COG0477 # Protein_GI_number: 15676302 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis MC58 # 7 439 13 449 451 433 53.0 1e-121 MEKTKKLPTLALSTLMMMTLGNLGTSMAFQLQSANMARIFQTLGADPTRLGFFFILPPLA GMIVQPLVGYYSDRTWIPRLGRRLPYLMLGTIVAVIVMCLLPNAGSLGLSTSAALWFGAI AILFMDLSSNMSMQPFKMMISDMVNIAQKDTAWSWQTIWSNIGGVFATILPTILTIIGIK NTASKGIVPDSVILSFYIGALILIVTSIFTICNVHEYDPITYAQYHKLANKKSEVHGLIN ILKKAPKVFWTLGIVQFCSWVSFQYLWTYGPGTIAQNIWHTANAKSEAFQLAGNWYGILL GIQTIIAILWGFVLVKINDKTRKPMYILGLIVGAIGYFVLANAHTKLESIIAFICIGIVW VTINAIPFTILTNALSGSNIGVYMGLFNSWICLPQVVASVASFVLYPLLNKYMPNMIMIS GIVSLIGAAAVLIIKETYGEKK >gi|311091860|gb|AEKJ01000015.1| GENE 70 76550 - 77320 390 256 aa, chain + ## HITS:1 COG:no KEGG:MARTH_orf139 NR:ns ## KEGG: MARTH_orf139 # Name: not_defined # Def: hypothetical protein # Organism: M.arthritidis # Pathway: not_defined # 27 240 6 219 243 129 44.0 1e-28 MEKWKLFELDCNAYLNKKYGNFFTHFGFSNSTISDIKYENNKKMFYIEVKMPSAQSGQFV LLPDYQNKKFVFSPNNKTKPNKSTDFIIAYMNKHFEKYAHVDSIGQNIDIDQKIFNEWIT NAYKDKGVKFMITKGKDYIIFPINQYGNYFFITAKYRIKKSGSSKVPKSKQQEVLKKLTQ MNINFELTDDFNIKSNNHLNKLKFQVDDSEYMFSYFKENIYHIRKLSNTRNANVIFSIEL RKEQNPTDLENFVNSL >gi|311091860|gb|AEKJ01000015.1| GENE 71 77322 - 78332 1068 336 aa, chain - ## HITS:1 COG:NMA1500 KEGG:ns NR:ns ## COG: NMA1500 COG0270 # Protein_GI_number: 15794400 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Neisseria meningitidis Z2491 # 12 326 20 337 337 216 41.0 6e-56 MIHIDNKSLKGYKFIDLFAGIGGFRLALESFGAKCVYSNEWDKFAQETYHMNFGDTPEGD ITQVDETSIPDHDILCAGFPCQPFSISGKQYGFEDSRGTLFFDVARIVKEKRPKVVFLEN VKNFATHDGGKTISVVKNTMLELGYSFQFRVLNPINYGIPQKRERVYMVCFRNDIERESF VFPQPFKLNRFVEDFLLPDNEVRDLIVNRTDLVLNDKVNINYNSPSTIRVGTVGKGGQGE RIYSPKGIAITLSAYGGGVFAKTGGYLINGQTRRLHPRECARIMGFPDSFKLNPNMNQAY KQLGNSVVVDVLQLITQQISDALNHKYSGTNQLEMV >gi|311091860|gb|AEKJ01000015.1| GENE 72 79000 - 79185 279 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500975|ref|ZP_05743877.1| ## NR: gi|259500975|ref|ZP_05743877.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_01030 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9210_1235 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9210_1235 [Lactobacillus iners SPIN 1401G] # 1 61 1 61 61 94 100.0 2e-18 MKELDVVGLKEDYKEISKGTKGTIVLIYDDKNCEVEFFDKDGDTIDVVMTPLKKLELIES F >gi|311091860|gb|AEKJ01000015.1| GENE 73 79185 - 79517 275 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500974|ref|ZP_05743876.1| ## NR: gi|259500974|ref|ZP_05743876.1| ATP-dependent RNA helicase [Lactobacillus iners DSM 13335] hypothetical protein LineA_01035 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9210_1236 [Lactobacillus iners SPIN 1401G] ATP-dependent RNA helicase [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9210_1236 [Lactobacillus iners SPIN 1401G] # 1 110 1 110 110 162 100.0 9e-39 MKKLIIMLDYISGPLWKDIYDTKKKELVTGIDVVDDDEYIQNLNDVISDLYSSYYKINYN DEPVYFDKEQEKKDKYKMLDLLGKLIKRLDEVNDGSFEIDDRETERVKNL >gi|311091860|gb|AEKJ01000015.1| GENE 74 79517 - 79930 477 137 aa, chain - ## HITS:1 COG:no KEGG:ABC1055 NR:ns ## KEGG: ABC1055 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 2 132 30 152 156 68 35.0 6e-11 MGAGNSRLYKNTKGALKPEHLMDELRQSGVKFNEEDVVMITKTKKKRLVWLEKGNETKGL KHIIDGHEKDFKNKFGVSKENIPSAIKDIFENGTEISSKRKNNGLEQVYLYKGEYIVITG VGTNGFIVSVYPGGGSR >gi|311091860|gb|AEKJ01000015.1| GENE 75 79930 - 80580 462 216 aa, chain - ## HITS:1 COG:no KEGG:Shel_18760 NR:ns ## KEGG: Shel_18760 # Name: not_defined # Def: hypothetical protein # Organism: S.heliotrinireducens # Pathway: not_defined # 57 195 1 139 161 144 43.0 2e-33 MSNYKYANSGFNPKLIENVSLVGKYDMPLIKKEEIEGIKEFIPFEKRNLHNEKNVGIHFY IYDGAFKQILDNPQKYMDELKKFNAVISPDFSICYDMPIVRQMYSTYMNRVMGAYYQNNG IKVIPNVRWGDSRSYEFCFEGLEKEGTYAIGSYGQIKRNSNRYYFEKGLEEFFKRLNPQK IYVYGAMPDSIFGNYINETNLISIEPYTSKIYRGDI >gi|311091860|gb|AEKJ01000015.1| GENE 76 80722 - 81255 582 177 aa, chain - ## HITS:1 COG:BMEI1683 KEGG:ns NR:ns ## COG: BMEI1683 COG2856 # Protein_GI_number: 17987966 # Func_class: E Amino acid transport and metabolism # Function: Predicted Zn peptidase # Organism: Brucella melitensis # 4 163 6 165 182 81 31.0 7e-16 MGGYIADPLSRKDIRKLANRLRELFGFERDINFPIVQVIEFLSNKGELNLEICTSDDMGS KLGETISSENLIKLREDIYDKACEDDGFSRSTCSHELLHWIKHREETVSFCRKEEDLKNR RAYEDPEWQANCFSGELLVPKHLVKGMTIDEIVQKCNVTPSMAYYQYKKYEEEGWEE >gi|311091860|gb|AEKJ01000015.1| GENE 77 81257 - 81616 326 119 aa, chain - ## HITS:1 COG:no KEGG:Fisuc_2499 NR:ns ## KEGG: Fisuc_2499 # Name: not_defined # Def: hypothetical protein # Organism: F.succinogenes # Pathway: not_defined # 1 117 1 117 119 91 41.0 1e-17 MLTQLGIFLRKLRLDCGEIMKEMATKLDVSSSFLSAVENGKKKMPESWYDTIVNLYNLDK EKQDELMTAIEESQKSLEINLEDLSKEKKRLAFSFARELENMNKEEVDKMKIFFKKDGE >gi|311091860|gb|AEKJ01000015.1| GENE 78 82024 - 82599 468 191 aa, chain - ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 32 151 239 365 368 66 31.0 2e-11 MSDIDLINGKVRFINNLHYSSKLNYELVPYLKNDASRRTVTIDAELLEVLKKWKKEQAKY NIHDFVFSCDNCPLNKSTLSVWLKRYSKLAGVSRINGRGLRHSNASYLIAELGADVLTVS HRLGHKTPMTTLKYYAHMFSNNDIELASKMEGSMDIQPASHSKIHFNGNQHIKGNSITGM PKVCQNKKKPA >gi|311091860|gb|AEKJ01000015.1| GENE 79 82581 - 83261 501 226 aa, chain - ## HITS:1 COG:no KEGG:LAR_1502 NR:ns ## KEGG: LAR_1502 # Name: not_defined # Def: phage integrase # Organism: L.reuteri_K # Pathway: not_defined # 2 220 6 228 405 177 41.0 2e-43 MKTRYPNVYQDKNGKYFYQIFIGTDANGKKKLKKGRRDALKHPFSSAYQAYKEAQRVQAL YANVSADNISYASFMKDRYLPKYRGDVEASTYDTHNLMMLKGVDFLGEIKLKDIKVIDCE KYRTWLLTDSGFSRNYASLIYTAFRQSLDYAVEIGLIASNPSLKTKSIPKGRNIENYWTM PEFEKVLASINTDTFYEELIYVTFLFYYRIGCRVNEGFALRCQILI >gi|311091860|gb|AEKJ01000015.1| GENE 80 83258 - 83461 316 67 aa, chain - ## HITS:1 COG:no KEGG:LAR_1503 NR:ns ## KEGG: LAR_1503 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 3 66 2 65 71 69 54.0 4e-11 MKKEFVNYKDLRQLGFGDNQARRIIRLAKKKLVEKGYAFYNGKRVGLVPAKAVAEVIGVP FKEDDNF >gi|311091860|gb|AEKJ01000015.1| GENE 81 83532 - 84050 567 172 aa, chain - ## HITS:1 COG:no KEGG:LC705_01954 NR:ns ## KEGG: LC705_01954 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 4 155 128 278 281 114 42.0 2e-24 MVLVSILVVLEPQASGSWHLHGLIKKKNGKLPYLDNNSVIAPMWRQGFTKTKRLKDSDNV AAYLMAYLTDMPKDEIMPNVKSKSILKGARLHFYPSGVHIYRNSRGIKRPTNFKGFKGQV LKDLGLSEDITADATFNRKQKLKDGKRLIHITEFYDNIPDKKKTNHARQDND >gi|311091860|gb|AEKJ01000015.1| GENE 82 84151 - 84414 243 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256844384|ref|ZP_05549870.1| ## NR: gi|256844384|ref|ZP_05549870.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 87 7 93 137 164 98.0 3e-39 MHQKIKKINKHAAVNVHLYGDVLEMTDYKPRKQRIKPLSKDNYVDLATGEVKDYHRNSQR IQSTENLRKTFKNLRRLIIGNFQAGDI >gi|311091860|gb|AEKJ01000015.1| GENE 83 84425 - 84508 87 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMFEVPAGALALWRCGCVATTINLING >gi|311091860|gb|AEKJ01000015.1| GENE 84 84505 - 85344 605 279 aa, chain - ## HITS:1 COG:no KEGG:lhv_0264 NR:ns ## KEGG: lhv_0264 # Name: not_defined # Def: FtsK family DNA segregation ATPase # Organism: L.helveticus # Pathway: not_defined # 3 259 5 260 270 239 46.0 1e-61 MSYLLTLSKSLSIDAYKKINFLVAGVRGSGKTYGTLILIAELASFPRISPCEFLGTVQLP TQIYCVDFKNSDLARLGDILPTGRVATNKEDAIKVVSDYDGKMHERLAFLRDKEFGATAG ALGMPMYYLLIDEWSATNASFNQGMTKADKDLRYKWNSLITDISMLNRVPGFGLGIISQQ ISVVNSGLNSSVQEEAGLKLHFGDANMNSYRLTFGNDIQIPEMRLETGEAYAWIEGLTSS GYVIPFCMPEIEPDKLWDYLKQALSNTQDDKKYLFFTSQ >gi|311091860|gb|AEKJ01000015.1| GENE 85 85346 - 85903 399 185 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500962|ref|ZP_05743864.1| ## NR: gi|259500962|ref|ZP_05743864.1| hypothetical protein HMPREF0520_0472 [Lactobacillus iners DSM 13335] hypothetical protein LineA_01100 [Lactobacillus iners AB-1] putative lipoprotein [Lactobacillus iners LactinV 11V1-d] putative lipoprotein [Lactobacillus iners LactinV 09V1-c] putative lipoprotein [Lactobacillus iners LactinV 03V1-b] putative lipoprotein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF0520_0472 [Lactobacillus iners DSM 13335] putative lipoprotein [Lactobacillus iners LactinV 11V1-d] putative lipoprotein [Lactobacillus iners LactinV 09V1-c] putative lipoprotein [Lactobacillus iners LactinV 03V1-b] putative lipoprotein [Lactobacillus iners LEAF 2062A-h1] # 1 185 1 185 185 391 100.0 1e-107 MPTRTRKPQEGGTPEKVIPPLGWLFLACAIALFILAFQVPWFGQYCIFFGICSLVLALGC LGYWVYLHYDEIRFGGLLHSKNVDLSVIYSPKMKAFLYQSNTTAPDPYDPRYQQLPHVRK TRDGLRIEAIGKLRQWLISDQFRDSLEAFLNYNRCNISIQNAQYHSDGWVYFTIIRGIKN DRLRW >gi|311091860|gb|AEKJ01000015.1| GENE 86 85903 - 86268 399 121 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256844381|ref|ZP_05549867.1| ## NR: gi|256844381|ref|ZP_05549867.1| predicted protein [Lactobacillus crispatus 125-2-CHN] predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 121 19 139 139 213 98.0 5e-54 MALKGLRDFVKFDAKGFLAGKQLLIMQESELKDFDSGKVIGAKLKVTIWTDDTQYKKDET SNEGSELDVKILGLTAEKVDRNNRGFIKLKNPSGVVFGDFQNQLSLKADGFDFVKERGGE N >gi|311091860|gb|AEKJ01000015.1| GENE 87 86842 - 88065 1224 407 aa, chain - ## HITS:1 COG:no KEGG:BSU06780 NR:ns ## KEGG: BSU06780 # Name: yeeC # Def: hypothetical protein # Organism: B.subtilis # Pathway: not_defined # 11 405 8 380 382 263 42.0 9e-69 MKIDNARPIRSLDDIFNDPAANELLAKPKKKRVTYDPEVEKFKEIENWVKEHNGKEPEKT TDLSRLGERKLASRLKGIREDLERIELLKPYDELGLLKTENQNVSLKEKVSQEKKTFNSL DDILNDDSALFDNSGQSLNSKLFDTGSLNAYKKSQENVAKNKSKRKAMDDFNKYRPLFKQ VQAELTSGKRHLIRYGNNKLKLHGFYVLKGQLMYIESIGAEFKNNNRSDTDTDARLHVIY DNGTENFPLRNGLIASLYGSKQRGGGGKIVTEPDDKFEFGEDDQVTGYIYVLKSLSNNAD VKRIQEDHPLYKVGFTSGTVERRIANAENESTYLYGPVKVVAEYQVINLNPEALETALHH ALVQYRLDVDIKAGNGRIIHPREWFVVDLNTITDIVNEIMSKLQMSK >gi|311091860|gb|AEKJ01000015.1| GENE 88 88052 - 90001 1853 649 aa, chain - ## HITS:1 COG:no KEGG:LLKF_0604 NR:ns ## KEGG: LLKF_0604 # Name: not_defined # Def: DNA helicase # Organism: L.lactis_KF147 # Pathway: not_defined # 5 647 4 640 641 766 61.0 0 MQDKNVVEVNYHQTGKSTNTDELGMREMQARVYQHRNSQYLLVKAPPASGKSRALMFVAL DKLANQGVKKIIVAVPERSIGRSFKNTELVKYGFYEDWKVDPQYDLTLPGGDESKVQKLV DFLNSLESRILICTHATLRFAYEKVADDRAFDNVMVAIDEFHHVSSNDSSVLGTALKNIM HNSSAHIMAMTGSYFRGDSEPILSPEDEQLFDKVTYTYYEQLDGYQYLKSFGIDYKFYQG SYLDALPDAIDTTKKTIIHIPSINSSASTKDKYNEVDAIFDAIGTLVDRDDKTGIYTIKS KQTGKLLKVADLVNEDGREKVQEYLRNISSADDLDIIVALNMAKEGFDWPWAEQALTIGY RHSLTEIVQIIGRVTRDSSNKTHAQFTNMIEQPDAKDDAVQYAVNQILKAITASLLMEQV LAPEIHLKRRNHKSDTPSGDADILIKGLKEPTTKRAQSIIENDLPDLKAAILQDNDVKNG IAANVDAEVMNKELIPKVIMTRYPDLNNDEVEQVSQYVVADTVLRHAKVDSSVDQEGNTN EFLKMADKFINVNDLDINLIESINPFQRAYDVMSQNIDSNTLRIIERSIDAKKYDFSNEE LMQLFMNAKAFVEKTGRRPDKNSNNEEEVRMAYALATLSDMRARRNENR >gi|311091860|gb|AEKJ01000015.1| GENE 89 90004 - 90717 611 237 aa, chain - ## HITS:1 COG:no KEGG:Celal_3329 NR:ns ## KEGG: Celal_3329 # Name: not_defined # Def: hypothetical protein # Organism: C.algicola # Pathway: not_defined # 5 230 2 238 241 78 24.0 2e-13 MKNRIPLVLLNDVEDQISQHFSANELIDLTYQFAPSFNKHIPIEVPDYALFNNKKELLSK NLDALSDEQKVDFLSQIKYHSRLSEDDFLRDEIDLLVKDASDGVIKARNSVSTLLETYSI DLKNQWQRTYRFYDHLDYRNALDNMRLTIELLIKRITGSEASLENQKSALGKFFEDKDIS KEVRNLFFKMLDMYEKIQNHEAKHNLPQNLNSKEIKFLMNQSTVIIKFLIDCDKGIS >gi|311091860|gb|AEKJ01000015.1| GENE 90 90707 - 93427 2252 906 aa, chain - ## HITS:1 COG:BS_yeeA KEGG:ns NR:ns ## COG: BS_yeeA COG1002 # Protein_GI_number: 16077744 # Func_class: V Defense mechanisms # Function: Type II restriction enzyme, methylase subunits # Organism: Bacillus subtilis # 1 898 1 873 879 928 52.0 0 MAITEIEDEISNIIEKNDKDSFIYDFLGVYDIPKATITKLKKGINNLADVAGEVYLKNKL YYKQTDKNLMQSFTDVKAKVDELGTKPRYIFVTNFKEVLAYDTKTDNTLSIPFERLPQKF EFFLAWNGIEKADFDKENPADIRAAERFAKLYDVIVKDNPNATRKGLNLFLIRVLFCLFA EDTDIFEKNLFTNRLKELTRLDGSDLDNFIGQLFSVLDVRKEDRPVDTPSWLADFPYVDG DLFKDPHESLKFTVKSRKLIIDAGEKLEWDQINPDILGSMLQAVASEDSRSHLGMHYTSV PNIMKVIKPLFLDELRNEFDKRKGSYKKLQHLYERIGKIKFMDSACGSGNFLIVTYKQLR QLEIDILKEQNKILAEEGSGKAMMYLPSVTLDQFYGIEIDDFACDTTRLSLWIAEHQMNI KLRDEINNAVRPTLPLQHAGAIVCGNALRLDWEKILPHKKDDEVYLFGNPPYLGSHGAKQ KKTHKEDIKVVFANLNGNYKGLDYISGWFMLGAEYINNTNATLAFVATSSITQGQQVFDL WNKILNLNIEISFCWEPFTWNNNAKNNAKVTVNIIGLTSLKKANNKRIYTDNSFNNTFEK VDNISPYLTNHSTIFIKSIGSSISNLPEMDMGDMANDGGNKAPGLLFTIDEYKKIIEQHP ETKQYFKRHVGTKEYMSSTCRYCLWIEKKEYNLLNKIPVFRNRFINVYNHRQSSSDKGTN NLAITPFKFRDTKIAKEYTIVVPKVNTVGRLYIPAGLLTKDYIISDLMFGIYDGPIWVLG LILSRLHYVWIKASCGKEGKSYRYSKNLGYNTFPVPRLSSRRKKEIEGLVLKILDIRDEE EGTLNDLYGSPLAEKNPKPMNPRLLKAHQELDEVVDRAYKSNGFKGDNDRLALLLDMYSR KIKNEE >gi|311091860|gb|AEKJ01000015.1| GENE 91 93733 - 95097 1230 454 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500955|ref|ZP_05743857.1| ## NR: gi|259500955|ref|ZP_05743857.1| hypothetical protein HMPREF0520_0465 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF0520_0465 [Lactobacillus iners DSM 13335] # 1 444 28 471 481 824 100.0 0 MNKVKNLPNLAKKIKRIIGKMVRENNKLLKKSMSEDYDMRKDPNLYAVKFGNRLLFITKG AHEDFVNLLENVEIVFNAENIEYDIDQISSKLEKFVDNIVSNNEPYNLDMINSFIDSIKK PNYKIYFFRLFDFAYKGKISLGQNIIIISGQELLKEIPEAEDLNRKAEENPKYEKLIQPE DILLGVSVIDSGKSDKSYYRALASANYINNIINFLNGFNHKPSRVLELSQHIIQEDGLYQ FTNKSGHFSTKQTPGILEDGWSTSTGINPDNRKKANMNFDKRWLPIISLIVEDSNKLTPL QKQCARAIDWIGDGIVNSNQTKQFLQIMISLETIVEQDPDKLKDKLEKDKLWKEGLSVSI EDQLVSIINLTCYQGVKPQQLKKSDAAIKRAYGLRSRITHDGEKFPQVDATEMLNTWYGL IYTIITDVMFTSRWNNVYDLWKAANLNIKNNKKN >gi|311091860|gb|AEKJ01000015.1| GENE 92 95270 - 96823 1783 517 aa, chain - ## HITS:1 COG:SP1445_2 KEGG:ns NR:ns ## COG: SP1445_2 COG0519 # Protein_GI_number: 15901295 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Streptococcus pneumoniae TIGR4 # 202 517 1 316 316 500 75.0 1e-141 MTKKNLRDFDKIIVLDFGSQYNQLITRRLRDFGIYSELLSHDLSAEKIKEINPKGIIFSG GPNSVYDQDAMRIDSDIFKLGIPVLGICYGMQLISHVFGGKVERAENSEYGRADISVADA TEGLFAGLPVKQTVWMSHGDLVTQAPAGFTTIASSVNCPIAAIANAEENIYGIQFHAEVR NSEYGLDILKNFAFNICHAEANWTMDDFIGMEIEDIRQTVGNKKVILGLSGGVDSSVTAT LLHRAIGDQLTAIFVDHGMLRKNEAEQVMAALNKELGINIIKVDAAERFLSKLAGVTEPE RKRKIIGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKDM HFSLIEPLRKLFKDEVRVLGEKLGLPHDLVWRQPFPGPGLGIRVIGEITAEKLAIVRESD AILREEIKNAGLQEDIWQYFTVLPGIRSVGVMGDGRTYDYTIGIRAVTSIDGMTADFAHI PWEVLQKISTRIVNDVDHINRVVYDITSKPPATIEWE >gi|311091860|gb|AEKJ01000015.1| GENE 93 97162 - 97740 522 192 aa, chain + ## HITS:1 COG:BH1514 KEGG:ns NR:ns ## COG: BH1514 COG0503 # Protein_GI_number: 15614077 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Bacillus halodurans # 1 191 1 191 198 207 56.0 1e-53 MEILEKRIRQDGELLPGNVLKVNSFLNHQIDPDLMFAIGQEFGKLFTGEKITKILTCEAS GIAPALTTGLIFHVPVVFARKSKPSTLNKECYETEVFSYTKQVTNKINVDKKFLSKDDSV LIIDDFLANGEAVKGLINIVKQANSKVAGVGIVIEKTFQGGSKWITDNGYHLESLARIAN FDNNTVHFVGEE >gi|311091860|gb|AEKJ01000015.1| GENE 94 97740 - 99023 400 427 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 14 427 19 425 447 158 26 1e-37 MDKQNTNLGKQAILGLQHLLAMYSGAVAVPMLIGTALHFNSAQMTYLISIDIFMCGLATA VQLFRNKYFGIGLPVVLGCAIQAVAPLQMIGQHFSITTMYGAIIVAGIFVVLISSQFARI KKLFPPVVTGSLITVIGLSLIPIAFQNIGGGNSLAKNFGDIKCLATGFATVLIILAFQAF GKGFLKSISILLGLIFGTMIASTLGMVSLEPVAQASWFHLPQPFYFGAPSFEISSCITMI IIAVVSMVESTGVFLAIGNIINKDITKQDLTKGYRAEGLAQILGGIFNTFPYTTFSNNVG VLELSGITSKKPIYWAAGFLMLMGLLPKIGALVSIIPVSVLGGAMLIMFAIVVVQGVNML SQVDISKSENILIIATSIGLGLGVSVYPQIFQQLPKTLQLFLGNGIVVASFSATMLNLLF SKRNKNK >gi|311091860|gb|AEKJ01000015.1| GENE 95 99102 - 99464 503 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161506945|ref|YP_001576899.1| 50S ribosomal protein L7/L12 [Lactobacillus helveticus DPC 4571] # 1 120 1 120 120 198 86 1e-49 MALETDKIIEALKGASILELNDLVKAIEEEFGVTAAAPVAAAATADAAAAKTEFDVELTE IGQEKVKVIKVVKEITGLGLKDSKDLVDGAPKNIKEGVSEAEANDIKAKLEEVGAKVTVK >gi|311091860|gb|AEKJ01000015.1| GENE 96 99509 - 100024 701 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525593|ref|ZP_03955642.1| 50S ribosomal protein L10 [Lactobacillus jensenii JV-V16] # 1 171 1 171 172 274 80 1e-72 MEVNSLSKAAIAAKEKYVDAFSEELKAAKSLLVVDYLGLTVDEVTSLRKELRESDVKMKV VKNTYLKRAAEKAGIEGLDETFSGPSAVVYTDNADDITEPARIVSKYAKDIEALSIKGGL LEGRVTSEEEIKQIASIPGREGLLSMLVSVLQAPVRNVAYAVKAVAESKGE >gi|311091860|gb|AEKJ01000015.1| GENE 97 100252 - 100944 1031 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855647|ref|ZP_04645947.1| ribosomal protein L1 [Lactobacillus jensenii 269-3] # 1 229 1 229 230 401 88 1e-111 MPKHGKKYLEAAKLVEAGKFYTVDEAMELVKKTSYAGFDATVEVSFNLSVDPKQADQQIR GSLVLPNGTGKTQKVIVFAEGPQAEAAKAAGADEVGSDDLVEKVQNGYFDFDVVVATPMM MAKVGRLGRVLGPKGLMPNPKTGTVTMDVAKAVENVKAGQVEYRVDKQGLIHAPIGKVSF ESAKLAENFNALREVILRARPAAAKGQYMKSVAVSATFGPGIYLDPMTLM >gi|311091860|gb|AEKJ01000015.1| GENE 98 101041 - 101466 689 141 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525597|ref|ZP_03955646.1| 50S ribosomal protein L11 [Lactobacillus jensenii JV-V16] # 1 141 1 141 141 270 97 3e-71 MAKKVINVVKLQIPAGAATPAPPVGPALGQAGINIVGFTKDFNARTADQKGMIIPVVITV YEDRSFDFITKTPPAAVLLKKAAKVEKGSGEPNTKKVAKVTKAQVKEIAETKMQDLNAAD VEAAMRMIEGTARSMGFEVED >gi|311091860|gb|AEKJ01000015.1| GENE 99 101608 - 102159 752 183 aa, chain - ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 6 180 2 177 178 185 56.0 4e-47 MVESSKKQWYVLHTYSGYEEKVKKDVLSRAQSMGMQDYIFRVIVPEVKKNEVVRGQEQKV DEKVFPGYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYDDEIKRILADQNKE AAPQSYDFEVGETVTITEGPFKNMEGKINSIQTDKEKLLVSIDMFGRETNAELDFTQVKK FEA >gi|311091860|gb|AEKJ01000015.1| GENE 100 102237 - 102404 153 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500946|ref|ZP_05743848.1| ## NR: gi|259500946|ref|ZP_05743848.1| preprotein translocase subunit SecE [Lactobacillus iners DSM 13335] preprotein translocase subunit SecE [Lactobacillus iners AB-1] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 11V1-d] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 09V1-c] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 03V1-b] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 01V1-a] preprotein translocase, SecE subunit [Lactobacillus iners SPIN 2503V10-D] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 3008A-a] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2062A-h1] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2052A-d] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2053A-b] preprotein translocase subunit SecE [Lactobacillus iners ATCC 55195] preprotein translocase, SecE subunit [Lactobacillus iners UPII 143-D] preprotein translocase, SecE subunit [Lactobacillus iners UPII 60-B] preprotein translocase, SecE subunit [Lactobacillus iners SPIN 1401G] preprotein translocase subunit SecE [Lactobacillus iners DSM 13335] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 11V1-d] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 09V1-c] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 03V1-b] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 01V1-a] preprotein translocase, SecE subunit [Lactobacillus iners SPIN 2503V10-D] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2053A-b] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2052A-d] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2062A-h1] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 3008A-a] preprotein translocase subunit SecE [Lactobacillus iners ATCC 55195] preprotein translocase, SecE subunit [Lactobacillus iners UPII 143-D] preprotein translocase, SecE subunit [Lactobacillus iners UPII 60-B] preprotein translocase, SecE subunit [Lactobacillus iners SPIN 1401G] # 1 55 1 55 55 95 100.0 2e-18 MFKFIKEVIASMKKVTWPTLEQNRRDTSTVVWCSILFAAYLGVLDFIFQQLVKLL >gi|311091860|gb|AEKJ01000015.1| GENE 101 102410 - 102559 230 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518502|ref|NP_964432.1| 50S ribosomal protein L33 [Lactobacillus johnsonii NCC 533] # 1 49 1 49 49 93 85 5e-18 MVVKKASLACTICGSRNYSIAASKSRTQRLELNKFCKYCGKKTLHKETR >gi|311091860|gb|AEKJ01000015.1| GENE 102 102698 - 103963 1242 421 aa, chain + ## HITS:1 COG:PA2589 KEGG:ns NR:ns ## COG: PA2589 COG0477 # Protein_GI_number: 15597785 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 40 420 27 402 404 87 25.0 7e-17 MIFIDYILLESRLFIVTNQRSIYAWWIFIVSCLISLIGFGLIVNTVGLFFIPLCKELHVN KSSISLMVTLQNLASAITLLIAGKIMSKVNLKWLLTILFAIIGIGFLSLSIANNLGWFYI VYIIIGICQPGAFILSIPVLLQKWFNAKLGTVMGIALGLSGIGGTIFNPLVADVIKSFGW RGGFIFEALLILLILVPASLTIIPQPNDKHHAYGEPSEVDHVKPGNESGLTLKQARKTIV FYSLTIAMFLLQFVSGSVQHVSGSILHIGFSIQTAGLVVSGIMFGAALGKISIGFLLDYF NAKVVLLFFALFGISGWYGQIILKNGLSLVLSAFILGLGQGICLVALPYLIKKEFGVKDY SNILSIINMVGALALSFAVLIDALLFDTTNSYNIGWYLNILAFLISFILLALTLKNYPNK K >gi|311091860|gb|AEKJ01000015.1| GENE 103 104077 - 104622 511 181 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0345 NR:ns ## KEGG: LGAS_0345 # Name: not_defined # Def: ComX # Organism: L.gasseri # Pathway: not_defined # 6 181 9 185 185 152 46.0 7e-36 MSDSELIMRVKQKDNDALQQLFVRYKPVVNKIKAQYYVRNYDYQDWDQEAMIVCYEACCL YDFERNSQFGAFYKTKFTNHVRSLLRYELAKRREANRTAISYEYGNDIGIIMEKFTNDYK LPISEIYSQFLSNLSELELLSILVYLGKLSHQQACKIGRCDRLKLLQAKARCKRKLKDEL F >gi|311091860|gb|AEKJ01000015.1| GENE 104 104735 - 105511 543 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 7 254 5 252 255 213 44 3e-54 MKSDSNNVDFVFGRHAGLDFLRTQDASLINKIFLQNGVQASIADQVYQLAKKKKIIVQSV PKSKLDKLVDQQNHQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSIL RTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFG TAMSGDNYTNWDARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGIL LYQMFNSRQAVKNGQIKQ >gi|311091860|gb|AEKJ01000015.1| GENE 105 105492 - 105935 320 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 13 140 9 136 141 127 50 2e-28 MLKPKKIVEKDIDPNTIGSLALAYLGDGVYEAAIRQHLVKGGIVRPQHLQGYATHYVSAK AQAGLITKMKELNKLTAEEIAIFKRGRNANSYTHAKNTSISTYKLSTGFEAMIGYLYLSK QYDRLDNLIAWCIEQVENGENNEKRFK >gi|311091860|gb|AEKJ01000015.1| GENE 106 105922 - 107265 1444 447 aa, chain - ## HITS:1 COG:L0348 KEGG:ns NR:ns ## COG: L0348 COG0215 # Protein_GI_number: 15673833 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Lactococcus lactis # 1 443 24 446 448 466 53.0 1e-131 MYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYEVKYISNFTDVDDKMINQARKENVS VADLADRYIKAFVADTTALNIKPATFNPRATEEITDIISFIKVLIAKGYAYVVDNDVYFR AKKFTKYGCLSGQNIDELEEGASQHISVEEQKKKEDAIDFALWKGQKTLDEIAWNSPWGK GRPGWHIECSVMSTKYLGNTIDIHGGGQDLQFPHHENELAQSEAKTGQKFVNYWLHNGFV TVGEKQEKMSKSLNNFITVHDLLKKVDPQVLRFYMSSVQYRKPINYTEDGLRQAETVLKR YKNILRNIEERLSEKNDATDSDLAERLIDAKKKFIAAMDDDFNVQNALSVMHELTLHVNV HLNNDFIDHKNLQDFVQLMDEWLLIFGVKITTEMENDDTIQKLVDQRNLARQNKDWATSD QIRDELLAKGIILEDTPQGTRWHHVKA >gi|311091860|gb|AEKJ01000015.1| GENE 107 107454 - 108953 1699 499 aa, chain - ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 3 491 4 488 491 547 57.0 1e-155 MATEKIRVRYAPSPTGHLHIGNARTALFNYLFARHNKGTMVLRIEDTDQKRNVEGGSKSQ MENLHWLGIDWDEGPDVGGEYGPYRQSERKDIYNKYIQQLLDEGKAYYSYTTSEELEAQR EEQRAMGIAPHYTYEYEGMTADEIKQAQAAAEAKGLKPVVRIHIPERRTYAWDDMVKGHV SFESDTIGGDFVIQKRDGMPTYNFAVVIDDHLMEITHVLRGDDHVANTPKQLVVYEAFNW TPPKFAHMTLIINAATGKKLSKRDESVLQFIEQYRDLGYLPDAMFNFITLLGWSPVGESE LFGRKELIKLFDPKRLSKSPAAFDKKKLEWVNNQYVKNADRDTLLDLSLNNLQEAGLVEQ DPNPEKMEWIRQLVNIYSVQMSYTKQIVDLGRIFFEEEPKLTEAELDEIKNDDARPVIEE FKKQLSQVPRFTAVQAMNAIMATRAATGVKGRKLFMPIRIAATRSMIGPGIGEAIELMGK ERVMHHLELTLTELNEANI >gi|311091860|gb|AEKJ01000015.1| GENE 108 109033 - 110412 1532 459 aa, chain - ## HITS:1 COG:L0303 KEGG:ns NR:ns ## COG: L0303 COG1066 # Protein_GI_number: 15674046 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Lactococcus lactis # 1 458 1 452 453 533 58.0 1e-151 MAKLKTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITAIGNNE PKKLSEIDIKKQIRITTPFSELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANS HKVLYVSGEESASQIKMRAERLHISDTELLLYSETNMENIREQIVDLKPEFLVIDSIQTM NEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILEHMVDTVLY FEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPNSTGSAIVV SLEGTRPILADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNLMLQNQDAFLTA TGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGLTGEIRRINNIEARVKEAATR GFKRIFVPKYNVSAKLQSHTTIEIVGVISLMEALKIEFT >gi|311091860|gb|AEKJ01000015.1| GENE 109 110412 - 110963 715 183 aa, chain - ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 178 1 149 150 132 45.0 3e-31 MKKRGFEVVSKYRDANINLPKRQTKGSAGYDFEAAVDMTIPSIWSLNFVRIFRLIRNQHI LNEFDFEKAEKIIKPFLVPTGIKSYMGDDEVLILANRSSNTFKRNLSLPNGIGVVDSDYY NNDNNEGEIFFQFINYGVRPFKIKKGDRIGQGIFMPFLKADEDGDLLVKRQGGFGSSGFG GEK >gi|311091860|gb|AEKJ01000015.1| GENE 110 111111 - 112457 1490 448 aa, chain + ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 1 448 4 445 445 464 52.0 1e-130 MTKEITSAIIDNFEKDFASRKDSQIAARAVQQNGIFKASQNLQTKVNLDPTFSIEIETGK VANQKASGRCWMFSALNTMRHPLQKNFKIKDFELSQNYTNFWDKFEKANWFFENVISTAN DDLGDRKVSFLFGTPQQDGGQWDMLCGIIEKYGIVPKYIYPETFSATASSALNDTLNTLL RKHGLELRKLVQNGTSSEDVQTRKDEMLKEVYRVLAISLGVPPKTFDFEYKDDDNQYHRD ANLTPKEFFKKYVGWDLSQYISTINAPTADKPFHKVFSVEYLGNVVDGRQVRHLNLPIDE MKDLIIKQLKSGEVVWFGSNVVKNSERQEGLLDTELYKRNELFDIDLNLSKADALNSGES LMDHAMVITGVDLVDGKPTKWKIENSWGEKPGFKGYFVMSDAWFDSFVYQAVVNKKHLSA ELKEIFEDGSKAPIQLLPWDPMGALAKF >gi|311091860|gb|AEKJ01000015.1| GENE 111 112498 - 113433 895 311 aa, chain - ## HITS:1 COG:FN1603_1 KEGG:ns NR:ns ## COG: FN1603_1 COG4639 # Protein_GI_number: 19704924 # Func_class: R General function prediction only # Function: Predicted kinase # Organism: Fusobacterium nucleatum # 1 142 1 137 174 75 31.0 2e-13 MRKIFLLRGAPGSGKSSLISRNHLQPYAISRDAIRLLLANLTFYHDQETDTLHQVIRHSV SDEEEQILDSLVERKMQWGETIIVDGTHITPDKIEHFKPWVDKYRYDLFVIDLMYNNTLE GLLKRNKVRAQYDWVRPEIITWMYNQYVEHRAVPDWAIEISPLGIERALSQKEKNLDAFN HVICVPNEVPEEDFPHVHISNFYFSFNDKFTEKYGTYRNVVNLAKTEQEAIEQFKLPFFV FKFHHKHFLISAKPIRNEMLDPIKKVKGTWIYTTGLYNVADFLKDYPVNEQSHVHQFNLD HIDAKRLLYIW >gi|311091860|gb|AEKJ01000015.1| GENE 112 113497 - 114174 558 225 aa, chain - ## HITS:1 COG:NMA1801 KEGG:ns NR:ns ## COG: NMA1801 COG0588 # Protein_GI_number: 15794692 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis Z2491 # 2 221 1 224 227 201 46.0 1e-51 MVKLVLVRHGESIANANNTYTGWDDVALSPLGIKQAQQAGYKLKKVDNFLPTAIHTSVLS RAIVTANIIADICNFLYLPIYKTWRLNERHYGALRGMNKQISKRVYGTKQVLSWRRGFES IPPLLATPSNDRRYQIGDLKNIPRGESLHQTQNRLMPYYYDHIASKLLLGQDQLIVAHGS SLRALIKKIENINDQDIVKVEVANAEPIIYTLDANLKIIDKNILR >gi|311091860|gb|AEKJ01000015.1| GENE 113 114176 - 114376 276 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500932|ref|ZP_05743834.1| ## NR: gi|259500932|ref|ZP_05743834.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_01240 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_1113 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0937 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_1272 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_1113 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0937 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_1272 [Lactobacillus iners SPIN 1401G] # 1 66 1 66 66 90 100.0 5e-17 MKVSIWTAIIVIIVGLYDLAYAFNRRQDLQDKSSCFKKRRMGIIGFIILGIIFVLLGVFL LFVGER >gi|311091860|gb|AEKJ01000015.1| GENE 114 114379 - 114615 281 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309808408|ref|ZP_07702307.1| ## NR: gi|309808408|ref|ZP_07702307.1| hypothetical protein HMPREF9211_1071 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9211_1071 [Lactobacillus iners LactinV 01V1-a] # 1 78 1 78 78 84 97.0 3e-15 MKLDSEIFSKELALLKNKTVTLSKKIQEKEWPLIRQKTTKLVNQTKKFTVQKSKDIYHIS KKTLDRTIIDLSKRCKKK >gi|311091860|gb|AEKJ01000015.1| GENE 115 114640 - 115527 968 295 aa, chain - ## HITS:1 COG:PH0896 KEGG:ns NR:ns ## COG: PH0896 COG1230 # Protein_GI_number: 14590752 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Pyrococcus horikoshii # 16 291 17 291 295 225 41.0 7e-59 MKKDYTSVKLIWITILNLIITIAEIIGGIACGSLALLSDALHNLSDTGAIIMSFIAHRIS RKNKSNTKTFGYDRAEIIAAFANGITLIAICIVLFVEALLNLKNPEPIKGNMMLIVSIIG LMANILSMFAVHNDTKKNINIKSTFVHMLSDALSSVVVVIAALIIKFWNWRWIDPVLTIL VSIFILIEALKITYKAANILMESNPCIDLEQVKQRILKINEIEHVHHVHLWQYSDKLIMM DAHINVSADMKIEDLENIYVKVGQELLPLGINHITLQAERNRGLNNNMISNNNLD >gi|311091860|gb|AEKJ01000015.1| GENE 116 115542 - 116231 945 229 aa, chain - ## HITS:1 COG:CAC0167 KEGG:ns NR:ns ## COG: CAC0167 COG0406 # Protein_GI_number: 15893461 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Clostridium acetobutylicum # 6 223 7 220 228 96 32.0 5e-20 MYTEIYLIRHGETMFNQLNKVQGWADSPLTVKGINDLRVTASNLSQIHFDRMYSSDLKRA IDTVHLIKDYNMVSQIGKIKKLPAFREVFFGGFEGDDIYETWRQVSIAGGMKPETNVCKI IDTLGIKEFRNATKKADERHLAENAKELDDRIMRAVHQIKEESDGLNRVLLVTHGDFIKS LGIKYWTQYSGKGDIEFPTNGSMTRGIFNQSGKFEIVDYNINNSDLINI >gi|311091860|gb|AEKJ01000015.1| GENE 117 116375 - 116953 425 192 aa, chain + ## HITS:1 COG:SP0804 KEGG:ns NR:ns ## COG: SP0804 COG0693 # Protein_GI_number: 15900697 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Streptococcus pneumoniae TIGR4 # 1 191 1 184 184 147 40.0 8e-36 MVKTAVIFANGCEEIEGLSIVDILRRLNIECDMIGLDSLDITGGHNIRFKCDKLISNDLL NYDMVALPGGMGGTQLLASNIDLQNIMKKRFANKKWNAAMCAAPLAFSKFGLLKQANYTC YPGFEKNISRENPQATFVDDLTVIDNKNKLITSRGPATAMSFAYAIAQTLQCKTAEIESN MLYTYLLKKSRD >gi|311091860|gb|AEKJ01000015.1| GENE 118 116969 - 117292 316 107 aa, chain - ## HITS:1 COG:BS_ebrB KEGG:ns NR:ns ## COG: BS_ebrB COG2076 # Protein_GI_number: 16078792 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 2 106 3 107 117 76 43.0 1e-14 MGYVELILAIVFEIIATAFLKLSNNFTNVWYSFGTIISYCLCFYLFSLSLKSIALGVAYA TWCGVGIIFTGIVSYLLWHESFPLPKLIGIILIIIGVVLCNLVSSHH >gi|311091860|gb|AEKJ01000015.1| GENE 119 117330 - 117665 197 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653992|ref|ZP_07906908.1| ## NR: gi|315653992|ref|ZP_07906908.1| conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 111 2038 2148 2148 131 91.0 2e-29 KTPSEPEASVTPVKPKTPSVPETSVTPVKPKTPSVPEVPAKKANASTIVKSQITKKNKNN IVKKKSKSIFSKVKSIKRHAQKNKKMPITIVSTAVLFLVSLIAFWIRKKKK Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:43:22 2011 Seq name: gi|311091859|gb|AEKJ01000016.1| Lactobacillus iners LEAF 2062A-h1 contig00083, whole genome shotgun sequence Length of sequence - 917 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - LSU_RRNA 37 - 917 95.0 # AE017198 [R:1879440..1882488] # 23S ribosomal RNA # Lactobacillus johnsonii NCC 533 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:43:24 2011 Seq name: gi|311091856|gb|AEKJ01000017.1| Lactobacillus iners LEAF 2062A-h1 contig00045, whole genome shotgun sequence Length of sequence - 6125 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 4908 6306 ## gi|312872617|ref|ZP_07732683.1| Gram-positive signal peptide protein, YSIRK family - Prom 5110 - 5169 9.2 - Term 5248 - 5288 7.0 2 2 Tu 1 . - CDS 5337 - 6125 839 ## COG1404 Subtilisin-like serine proteases Predicted protein(s) >gi|311091856|gb|AEKJ01000017.1| GENE 1 3 - 4908 6306 1635 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872617|ref|ZP_07732683.1| ## NR: gi|312872617|ref|ZP_07732683.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LEAF 2062A-h1] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LEAF 2062A-h1] # 1 1635 1 1635 1636 3024 100.0 0 MGISKNNLQNKLQQEARQVPHFGIRKLAIGTASVLLSTSLYFGAMGRLVQANANVATGNN VENEKINSGKKDIDKSGKKSTTQGEQHAIAARPEAVVATTSSTANTESKESTKYDRSAMD REAAERAAYESDFCPVIRDGNYDTQQLSQFYNKRYEEIKERDKMIRDIKLSVKKYLGSAD EMKEIIDRLDKIKNPERLKAAIAEVQQEAIKKAEQKLPSFKDTAMSKIKKLADLPNVPTY TAQLTRANSFEEVEKVVAKATLENERAKVSKHIQANYSQMRDYKDLDSGQNKKNRDKMTA ILNQLQKDVGSAQSIDELRQIKYKSDDAVTGWETKTADDQIKDSYAHIFDKGRISDFNLN PTYRKYDNKLIDPANISQTVQRQIDGTYEWQINLNDQNAYCRNARFYFTIPKEHEILKDK GISVWYDNSDKYGNYQPKGSKHNENIKGQDLSYVIAATLGNKDNVQKGNTEDGSSSDGRG FWWGGGLPNSGWPPAGRVRTLQDMIYGFWGDPKRNSTDNEHPDPKHPNTVKVTRDFLNKG YDKWSNRLWQNGTLSKAATMRAVSDVSDRVEKKIKDIQENKDQMYVVTLNDYPRVTIKFY TKSPNTPKAINRDEKIQSIIGCRSFQGNKLHNVVAFNTTLAAKHTPDINIRPITVPLGVT PPAEAGIANLLEVPQGAKIAWAEAPKVDKLTTEDNPAYGKAEVILGGDRHYTVNVPVHVI GVFKENVNLDRIKNGAPNGQFAVETDGVSVTPGKLSNGFSITDTGVLSGTPDGGHWDELQ CQKKIEVPIKVNGQSKKVQMILVKTDKIPPVVTFYTGHKIVNDHTGEITASQPQGADSKL PTLVFYKGLPGRYSVLTTDDSKIVNDAVYMINGKADNDANDDVVKGISNNSLAYQKTNRA MHGSDMNPYAFEISGTVDNTVKTGVYKRTIQAWDGTDNHKNFDFYIEVREKGQAYDLNGK AYKQEVGTNCPAMWQGHTDSHQMSDFVVPPKTSVPGGMQWGWDGKKPDDNLDKDKKFKYA GYYEYIAQAKMPDGTLIRTDGAERNLSQGKHDKVRITVTPHKPEILTDLTNSKNVVSKQV KVKVGKGLKQGSKVVILSEDGNTELASTRLTSDDQETVMITVPKITGKIFAKSIAQGPDG ESASAHPDTPVDVPSVLSDPKAPTNEAKATLVLENNGDEENKNYTTVDNNKKLITIVAGK PFDIMGKVTDISDIVKDTEVLAGNNPDASNWMNPEEADENGQKHRRDRNYQAKYSKDTNR ARNTLGTQANPYLVHLSGTAPVDHQQKDYHVKFRTWNGADKSEVIPYTVRIVPVSADKAN ITAGEIVKEYGQNTTSKELQDKVTVKNIDTNLIDGKEVDVDKINKDDKYKVIRDLLTNDN GLSGDKPGTYKVPVRVDFTDDSSKDADVTVKVKYPNAEFEGDLFGGTESVTEGGKTTPWY NPNGYLLNEFERDSIRTIHYVVKDSKGKVVEDSKHDRLNSHFIIHDKLYTDGDYTLTVTV NDIKDKNNKYYGLYNPITKVLPFKMNKSLDKGPKGDNGKNGTNGINGKNGESIIDPHIDT NGDLWVTVVDANGKKTNKKIGHVKGAKGDNGINGKNGESFIDPHVDEKGDLWVTVVDANG NKSKKNIGHVKGAKG >gi|311091856|gb|AEKJ01000017.1| GENE 2 5337 - 6125 839 262 aa, chain - ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 29 194 904 1052 1052 65 34.0 9e-11 GAPTEVTVKDVPVVNEGTAYNDPKTPAKTVVSGKTTPKAQVEVKDKDGKTIGTGTADDQG HFTISVPKQNPDTKLTLVPTANGVTGEPTEVTVKDVPVVSGNSTIESINEIPVIIDGKAI NPENGSAKTVVSGKTTPKAQVEVKDKDGKTIGTGTADDQGNFTVAVPKQDPDTKLTLVPT ANGVTGESSEVTVKDDIVNNVKIKSSKSVDNTKASDTHIRSDKATAHELPQTGNNSFALT GLLLAGIAAMLGISEYRRKNKD Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:47:16 2011 Seq name: gi|311091660|gb|AEKJ01000018.1| Lactobacillus iners LEAF 2062A-h1 contig00046, whole genome shotgun sequence Length of sequence - 192189 bp Number of predicted genes - 198, with homology - 192 Number of transcription units - 79, operones - 45 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 5766 4775 ## COG5523 Predicted integral membrane protein - Prom 5841 - 5900 8.8 - Term 5844 - 5898 11.2 2 2 Op 1 59/0.000 - CDS 5912 - 6307 644 ## PROTEIN SUPPORTED gi|238855101|ref|ZP_04645429.1| ribosomal protein S9 3 2 Op 2 7/0.000 - CDS 6321 - 6764 696 ## PROTEIN SUPPORTED gi|238853451|ref|ZP_04643829.1| ribosomal protein L13 4 2 Op 3 8/0.000 - CDS 6866 - 7648 635 ## COG0101 Pseudouridylate synthase 5 2 Op 4 34/0.000 - CDS 7649 - 8446 712 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 6 2 Op 5 15/0.000 - CDS 8447 - 9298 935 ## COG1122 ABC-type cobalt transport system, ATPase component 7 2 Op 6 6/0.000 - CDS 9274 - 10122 424 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - Prom 10161 - 10220 10.2 8 3 Op 1 50/0.000 - CDS 10306 - 10689 570 ## PROTEIN SUPPORTED gi|116628989|ref|YP_814161.1| 50S ribosomal protein L17 9 3 Op 2 32/0.000 - CDS 10714 - 11652 1154 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 10 3 Op 3 48/0.000 - CDS 11698 - 12087 635 ## PROTEIN SUPPORTED gi|42518454|ref|NP_964384.1| 30S ribosomal protein S11 11 3 Op 4 2/0.000 - CDS 12108 - 12458 531 ## PROTEIN SUPPORTED gi|42518453|ref|NP_964383.1| 30S ribosomal protein S13 12 3 Op 5 . - CDS 12491 - 12607 203 ## PROTEIN SUPPORTED gi|116628985|ref|YP_814157.1| 50S ribosomal protein L36 13 3 Op 6 6/0.000 - CDS 12622 - 12843 297 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 14 3 Op 7 28/0.000 - CDS 12919 - 13569 735 ## COG0563 Adenylate kinase and related kinases 15 3 Op 8 53/0.000 - CDS 13579 - 14883 1475 ## COG0201 Preprotein translocase subunit SecY 16 3 Op 9 48/0.000 - CDS 14883 - 15323 657 ## PROTEIN SUPPORTED gi|116628981|ref|YP_814153.1| 50S ribosomal protein L15 17 3 Op 10 50/0.000 - CDS 15354 - 15539 269 ## PROTEIN SUPPORTED gi|227525640|ref|ZP_03955689.1| 50S ribosomal protein L30 18 3 Op 11 56/0.000 - CDS 15552 - 16064 790 ## PROTEIN SUPPORTED gi|42518446|ref|NP_964376.1| 30S ribosomal protein S5 19 3 Op 12 46/0.000 - CDS 16082 - 16441 535 ## PROTEIN SUPPORTED gi|116628978|ref|YP_814150.1| 50S ribosomal protein L18 20 3 Op 13 55/0.000 - CDS 16468 - 16998 824 ## PROTEIN SUPPORTED gi|227888838|ref|ZP_04006643.1| 50S ribosomal protein L6 21 3 Op 14 50/0.000 - CDS 17023 - 17421 632 ## PROTEIN SUPPORTED gi|116628976|ref|YP_814148.1| 30S ribosomal protein S8 22 3 Op 15 50/0.000 - CDS 17448 - 17633 332 ## PROTEIN SUPPORTED gi|42518442|ref|NP_964372.1| 30S ribosomal protein S14 23 3 Op 16 48/0.000 - CDS 17649 - 18191 832 ## PROTEIN SUPPORTED gi|42518441|ref|NP_964371.1| 50S ribosomal protein L5 24 3 Op 17 57/0.000 - CDS 18206 - 18448 343 ## PROTEIN SUPPORTED gi|42518440|ref|NP_964370.1| 50S ribosomal protein L24 25 3 Op 18 50/0.000 - CDS 18469 - 18837 585 ## PROTEIN SUPPORTED gi|42518439|ref|NP_964369.1| 50S ribosomal protein L14 26 3 Op 19 . - CDS 18866 - 19132 425 ## PROTEIN SUPPORTED gi|42518438|ref|NP_964368.1| 30S ribosomal protein S17 27 3 Op 20 . - CDS 19155 - 19352 291 ## PROTEIN SUPPORTED gi|116628971|ref|YP_814143.1| 50S ribosomal protein L29 28 3 Op 21 50/0.000 - CDS 19330 - 19767 690 ## PROTEIN SUPPORTED gi|116628970|ref|YP_814142.1| 50S ribosomal protein L16 29 3 Op 22 61/0.000 - CDS 19770 - 20444 1025 ## PROTEIN SUPPORTED gi|42518435|ref|NP_964365.1| 30S ribosomal protein S3 30 3 Op 23 59/0.000 - CDS 20459 - 20812 521 ## PROTEIN SUPPORTED gi|161506878|ref|YP_001576832.1| 50S ribosomal protein L22 31 3 Op 24 60/0.000 - CDS 20831 - 21115 438 ## PROTEIN SUPPORTED gi|42518433|ref|NP_964363.1| 30S ribosomal protein S19 32 3 Op 25 61/0.000 - CDS 21138 - 21974 1356 ## PROTEIN SUPPORTED gi|227521625|ref|ZP_03951674.1| 50S ribosomal protein L2 33 3 Op 26 61/0.000 - CDS 21990 - 22292 454 ## PROTEIN SUPPORTED gi|116628965|ref|YP_814137.1| 50S ribosomal protein L23 34 3 Op 27 58/0.000 - CDS 22292 - 22906 551 ## PROTEIN SUPPORTED gi|167755913|ref|ZP_02428040.1| hypothetical protein CLORAM_01433 35 3 Op 28 40/0.000 - CDS 22921 - 23550 1014 ## PROTEIN SUPPORTED gi|42518429|ref|NP_964359.1| 50S ribosomal protein L3 36 3 Op 29 . - CDS 23578 - 23886 494 ## PROTEIN SUPPORTED gi|42518428|ref|NP_964358.1| 30S ribosomal protein S10 - Prom 24023 - 24082 8.4 37 4 Tu 1 . + CDS 23917 - 24180 198 ## + Term 24205 - 24238 -1.0 - Term 24082 - 24117 1.1 38 5 Op 1 11/0.000 - CDS 24131 - 25096 1136 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 25125 - 25184 12.0 39 5 Op 2 . - CDS 25190 - 26575 1479 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) 40 5 Op 3 . - CDS 26609 - 27445 915 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 27476 - 27535 7.2 - Term 27514 - 27567 10.2 41 6 Op 1 2/0.000 - CDS 27583 - 27825 313 ## COG4466 Uncharacterized protein conserved in bacteria 42 6 Op 2 7/0.000 - CDS 27903 - 28790 871 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 43 6 Op 3 3/0.000 - CDS 28780 - 29343 698 ## COG1658 Small primase-like proteins (Toprim domain) 44 6 Op 4 8/0.000 - CDS 29327 - 30100 771 ## COG0084 Mg-dependent DNase 45 6 Op 5 . - CDS 30100 - 32079 2282 ## COG0143 Methionyl-tRNA synthetase - Prom 32103 - 32162 7.9 - Term 32139 - 32193 13.0 46 7 Tu 1 . - CDS 32194 - 34881 2379 ## COG0474 Cation transport ATPase - Prom 34956 - 35015 3.9 47 8 Op 1 . - CDS 35213 - 35782 363 ## LGAS_0203 beta-propeller domain-containing protein 48 8 Op 2 . - CDS 35779 - 36252 504 ## COG2131 Deoxycytidylate deaminase 49 8 Op 3 . - CDS 36274 - 37293 1288 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 37462 - 37521 74.3 + TRNA 37445 - 37515 55.9 # Gly CCC 0 0 - Term 37423 - 37484 7.4 50 9 Tu 1 . - CDS 37547 - 38218 413 ## LGAS_0198 hypothetical protein - Prom 38243 - 38302 3.4 + Prom 38092 - 38151 10.3 51 10 Tu 1 . + CDS 38332 - 38646 142 ## gi|259500877|ref|ZP_05743779.1| hypothetical protein HMPREF0520_0387 + Term 38718 - 38763 7.5 - Term 38565 - 38612 -0.7 52 11 Tu 1 . - CDS 38669 - 38986 159 ## - Prom 39112 - 39171 14.3 + Prom 39087 - 39146 15.2 53 12 Op 1 45/0.000 + CDS 39193 - 39894 232 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 54 12 Op 2 . + CDS 39895 - 40695 718 ## COG0842 ABC-type multidrug transport system, permease component + Term 40700 - 40735 5.3 - Term 40679 - 40731 11.1 55 13 Tu 1 . - CDS 40788 - 41249 539 ## COG0782 Transcription elongation factor - Prom 41286 - 41345 8.9 + Prom 41205 - 41264 9.5 56 14 Op 1 . + CDS 41412 - 41885 429 ## gi|309809141|ref|ZP_07703014.1| conserved domain protein 57 14 Op 2 . + CDS 41866 - 43293 1076 ## COG3428 Predicted membrane protein 58 14 Op 3 . + CDS 43364 - 44674 1728 ## COG3579 Aminopeptidase C + Term 44686 - 44724 8.8 - Term 44719 - 44775 9.3 59 15 Op 1 . - CDS 44808 - 46757 2185 ## COG3590 Predicted metalloendopeptidase - Prom 46785 - 46844 5.9 60 15 Op 2 . - CDS 46872 - 48092 1199 ## COG0477 Permeases of the major facilitator superfamily - Prom 48129 - 48188 5.8 - Term 48149 - 48194 4.1 61 16 Op 1 12/0.000 - CDS 48195 - 48908 640 ## COG0602 Organic radical activating enzymes 62 16 Op 2 . - CDS 48933 - 51122 1964 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 51278 - 51337 8.3 - Term 51272 - 51316 6.9 63 17 Op 1 . - CDS 51345 - 51662 295 ## gi|315654058|ref|ZP_07906974.1| conserved hypothetical protein 64 17 Op 2 . - CDS 51687 - 52325 923 ## llmg_0756 putative secreted protein - Prom 52494 - 52553 9.6 - Term 52525 - 52578 10.1 65 18 Op 1 1/0.000 - CDS 52608 - 53873 1400 ## COG3919 Predicted ATP-grasp enzyme 66 18 Op 2 . - CDS 53891 - 55840 1872 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 67 18 Op 3 . - CDS 55906 - 57297 1250 ## LGAS_0134 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase - Term 57314 - 57340 -0.6 68 18 Op 4 . - CDS 57350 - 57832 654 ## LJ0133 hypothetical protein - Prom 57853 - 57912 6.0 - Term 57858 - 57898 2.2 69 19 Tu 1 . - CDS 57918 - 58394 607 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Prom 58450 - 58509 9.9 70 20 Op 1 . + CDS 58543 - 58821 196 ## FI9785_195 putative serine/tyrosine protein phosphatase (EC:3.1.3.48) + Prom 58858 - 58917 2.1 71 20 Op 2 . + CDS 58939 - 59343 301 ## COG2365 Protein tyrosine/serine phosphatase + Term 59398 - 59442 11.1 + Prom 59429 - 59488 9.1 72 21 Op 1 . + CDS 59531 - 60451 1034 ## COG4586 ABC-type uncharacterized transport system, ATPase component 73 21 Op 2 . + CDS 60457 - 61200 506 ## Ldb0155 ABC transporter, permease protein 74 21 Op 3 . + CDS 61197 - 61970 503 ## COG3694 ABC-type uncharacterized transport system, permease component + Prom 61972 - 62031 3.7 75 22 Tu 1 . + CDS 62072 - 62935 741 ## LAC30SC_10090 hypothetical protein + Term 62939 - 62981 8.3 + Prom 63154 - 63213 7.5 76 23 Tu 1 . + CDS 63288 - 63947 442 ## LBA1932 hypothetical protein 77 24 Tu 1 . - CDS 64056 - 65633 1052 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 65766 - 65825 8.5 - Term 65806 - 65850 4.4 78 25 Op 1 3/0.000 - CDS 65943 - 66341 555 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 66367 - 66426 5.1 79 25 Op 2 . - CDS 66434 - 67594 1092 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase - Prom 67751 - 67810 7.6 + Prom 67590 - 67649 6.6 80 26 Tu 1 . + CDS 67682 - 70636 2755 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases + Term 70665 - 70710 2.2 - Term 70649 - 70701 11.8 81 27 Op 1 3/0.000 - CDS 70718 - 71467 843 ## COG5438 Predicted multitransmembrane protein 82 27 Op 2 . - CDS 71479 - 72564 806 ## COG5438 Predicted multitransmembrane protein 83 27 Op 3 . - CDS 72584 - 73267 791 ## lhv_0144 hypothetical protein 84 27 Op 4 . - CDS 73260 - 74345 1510 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes - Prom 74505 - 74564 12.4 + Prom 74311 - 74370 9.5 85 28 Tu 1 . + CDS 74578 - 76017 1193 ## LGAS_0106 hypothetical protein + Term 76079 - 76121 8.0 + Prom 76548 - 76607 4.2 86 29 Tu 1 . + CDS 76698 - 77318 572 ## COG1051 ADP-ribose pyrophosphatase + Term 77469 - 77510 -0.1 87 30 Op 1 . - CDS 78218 - 78532 213 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 88 30 Op 2 . - CDS 78591 - 79361 516 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 79436 - 79495 3.6 - Term 79676 - 79710 2.0 89 31 Tu 1 . - CDS 79882 - 80745 749 ## COG1396 Predicted transcriptional regulators - Prom 80842 - 80901 8.2 - Term 80995 - 81042 2.2 90 32 Op 1 . - CDS 81059 - 81805 685 ## LSL_1382 hypothetical protein 91 32 Op 2 . - CDS 81798 - 82538 315 ## LKI_03870 putative transporter, trans-membrane domain bacteriocin immunity protein 92 32 Op 3 . - CDS 82545 - 83450 279 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 93 32 Op 4 . - CDS 83443 - 84468 895 ## COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain - Prom 84608 - 84667 4.4 94 33 Tu 1 . - CDS 84764 - 84961 114 ## gi|309805802|ref|ZP_07699839.1| putative lantibiotic mutacin-2 - Prom 85028 - 85087 5.7 95 34 Tu 1 . - CDS 85104 - 85310 111 ## 96 35 Tu 1 . + CDS 85459 - 86439 866 ## CD1869 putative conjugative transposon mobilization protein + Term 86582 - 86612 1.3 - Term 86316 - 86363 8.8 97 36 Op 1 . - CDS 86454 - 86738 294 ## - Prom 86831 - 86890 1.6 98 36 Op 2 . - CDS 86943 - 87113 114 ## CD1862 putative conjugative transposon DNA recombination protein - Prom 87216 - 87275 5.8 - Term 87389 - 87428 -0.9 99 37 Tu 1 . - CDS 87491 - 87805 226 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - Prom 87857 - 87916 5.9 100 38 Op 1 . - CDS 88017 - 88844 939 ## LGAS_0105 hypothetical protein 101 38 Op 2 . - CDS 88852 - 89517 662 ## LJ0105 hypothetical protein - Prom 89574 - 89633 12.1 - Term 89618 - 89663 7.2 102 39 Op 1 . - CDS 89674 - 90663 1278 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 90689 - 90748 4.6 103 39 Op 2 1/0.000 - CDS 90752 - 91408 811 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 104 39 Op 3 . - CDS 91438 - 92244 772 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 92265 - 92324 11.5 + Prom 92283 - 92342 8.4 105 40 Tu 1 . + CDS 92379 - 93344 1064 ## COG4086 Predicted secreted protein + Term 93381 - 93424 5.4 + Prom 93539 - 93598 8.9 106 41 Tu 1 . + CDS 93664 - 94116 306 ## FI9785_p9785L.16 putative single-stranded DNA-binding protein 107 42 Tu 1 . - CDS 93903 - 94313 389 ## gi|309805781|ref|ZP_07699818.1| hypothetical protein HMPREF9213_0530 - Prom 94338 - 94397 7.8 + Prom 94340 - 94399 12.2 108 43 Op 1 . + CDS 94531 - 95142 710 ## EUBREC_2744 hypothetical protein 109 43 Op 2 11/0.000 + CDS 95073 - 95960 517 ## COG2801 Transposase and inactivated derivatives + Prom 96468 - 96527 3.1 110 43 Op 3 . + CDS 96609 - 96776 129 ## COG2801 Transposase and inactivated derivatives - Term 96875 - 96918 9.2 111 44 Tu 1 . - CDS 96967 - 97617 951 ## COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein - Prom 97659 - 97718 10.2 + Prom 97612 - 97671 7.4 112 45 Tu 1 . + CDS 97698 - 99143 1147 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 99367 - 99406 0.6 113 46 Op 1 34/0.000 + CDS 99527 - 101134 1751 ## COG0765 ABC-type amino acid transport system, permease component 114 46 Op 2 . + CDS 101127 - 101882 271 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 + Term 101885 - 101937 8.6 - Term 101873 - 101925 9.4 115 47 Tu 1 . - CDS 101942 - 103645 199 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 103760 - 103819 5.0 - Term 103769 - 103807 2.1 116 48 Op 1 . - CDS 103821 - 104669 592 ## LGAS_0084 restriction endonuclease 117 48 Op 2 . - CDS 104742 - 105389 682 ## COG1896 Predicted hydrolases of HD superfamily - Prom 105416 - 105475 9.6 - Term 105445 - 105482 4.1 118 49 Op 1 . - CDS 105503 - 105637 208 ## 119 49 Op 2 . - CDS 105694 - 106065 277 ## FI9785_136 hypothetical protein - Prom 106298 - 106357 9.2 + Prom 106035 - 106094 11.9 120 50 Op 1 . + CDS 106273 - 107379 788 ## COG0471 Di- and tricarboxylate transporters 121 50 Op 2 3/0.000 + CDS 107395 - 107946 504 ## COG1704 Uncharacterized conserved protein 122 50 Op 3 . + CDS 107949 - 108842 657 ## COG0501 Zn-dependent protease with chaperone function + Term 109001 - 109027 0.1 + Prom 108845 - 108904 5.5 123 51 Op 1 4/0.000 + CDS 109047 - 109595 432 ## COG4721 Predicted membrane protein 124 51 Op 2 34/0.000 + CDS 109570 - 110943 173 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 125 51 Op 3 . + CDS 110957 - 111613 361 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters + Term 111682 - 111712 -0.9 126 52 Tu 1 . - CDS 111616 - 112095 524 ## COG1576 Uncharacterized conserved protein - Prom 112147 - 112206 8.2 - Term 112592 - 112638 1.3 127 53 Op 1 3/0.000 - CDS 112647 - 113819 1326 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 128 53 Op 2 4/0.000 - CDS 113855 - 114652 631 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 129 53 Op 3 . - CDS 114677 - 115513 812 ## COG4853 Uncharacterized protein conserved in bacteria 130 53 Op 4 . - CDS 115503 - 116837 997 ## LGAS_0066 hypothetical protein 131 53 Op 5 8/0.000 - CDS 116827 - 118665 1794 ## COG5002 Signal transduction histidine kinase - Term 118674 - 118702 -0.1 132 53 Op 6 . - CDS 118707 - 119411 814 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 119634 - 119693 78.9 + TRNA 119617 - 119689 85.0 # Lys CTT 0 0 - Term 119682 - 119725 4.6 133 54 Op 1 4/0.000 - CDS 119739 - 121076 319 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 134 54 Op 2 . - CDS 121100 - 122425 1273 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases - Prom 122531 - 122590 8.3 + Prom 122489 - 122548 11.8 135 55 Tu 1 . + CDS 122684 - 122971 310 ## gi|259500794|ref|ZP_05743696.1| hypothetical protein HMPREF0520_0304 + Term 123005 - 123045 5.2 - Term 123039 - 123084 6.6 136 56 Op 1 . - CDS 123182 - 123394 146 ## Ldb0080 hypothetical protein 137 56 Op 2 . - CDS 123420 - 123524 70 ## - Prom 123593 - 123652 9.5 - Term 123662 - 123707 6.6 138 57 Op 1 . - CDS 123715 - 124626 1086 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 139 57 Op 2 . - CDS 124676 - 126028 994 ## COG1114 Branched-chain amino acid permeases - Prom 126057 - 126116 7.0 140 57 Op 3 . - CDS 126120 - 127571 1172 ## COG0531 Amino acid transporters - Prom 127595 - 127654 9.8 141 58 Op 1 . - CDS 127689 - 128516 863 ## COG0708 Exonuclease III 142 58 Op 2 . - CDS 128536 - 129228 518 ## COG1011 Predicted hydrolase (HAD superfamily) 143 58 Op 3 . - CDS 129234 - 129755 340 ## LAF_0389 hypothetical protein - Prom 129968 - 130027 6.3 + Prom 129767 - 129826 11.5 144 59 Tu 1 . + CDS 129878 - 130714 765 ## COG1307 Uncharacterized protein conserved in bacteria + Term 130753 - 130788 4.4 + Prom 130755 - 130814 7.5 145 60 Op 1 4/0.000 + CDS 130967 - 131980 987 ## COG0208 Ribonucleotide reductase, beta subunit 146 60 Op 2 18/0.000 + CDS 131982 - 132407 414 ## COG1780 Protein involved in ribonucleotide reduction 147 60 Op 3 . + CDS 132397 - 134574 1947 ## COG0209 Ribonucleotide reductase, alpha subunit 148 61 Op 1 11/0.000 - CDS 134663 - 136555 1946 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 149 61 Op 2 10/0.000 - CDS 136567 - 137952 1427 ## COG0486 Predicted GTPase - Prom 137972 - 138031 5.3 - Term 137971 - 138020 1.1 150 61 Op 3 22/0.000 - CDS 138052 - 138927 744 ## COG0706 Preprotein translocase subunit YidC 151 61 Op 4 . - CDS 138929 - 139300 262 ## COG0594 RNase P protein component - Term 139319 - 139349 2.0 152 61 Op 5 . - CDS 139350 - 139490 230 ## PROTEIN SUPPORTED gi|227521920|ref|ZP_03951969.1| ribosomal protein L34 - Prom 139575 - 139634 8.5 + Prom 139927 - 139986 3.5 153 62 Op 1 16/0.000 + CDS 140012 - 141331 1289 ## COG0593 ATPase involved in DNA replication initiation + Term 141344 - 141387 4.2 + Prom 141408 - 141467 7.4 154 62 Op 2 6/0.000 + CDS 141491 - 142633 1204 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) + Term 142675 - 142709 -0.7 + Prom 142755 - 142814 9.7 155 62 Op 3 9/0.000 + CDS 142835 - 143080 140 ## COG2501 Uncharacterized conserved protein 156 62 Op 4 9/0.000 + CDS 143084 - 144205 843 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 157 62 Op 5 24/0.000 + CDS 144206 - 146167 2264 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 158 62 Op 6 . + CDS 146177 - 148624 2729 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 148753 - 148786 -1.0 + Prom 148685 - 148744 4.4 159 63 Op 1 24/0.000 + CDS 148802 - 149098 466 ## PROTEIN SUPPORTED gi|42518091|ref|NP_964021.1| 30S ribosomal protein S6 160 63 Op 2 21/0.000 + CDS 149134 - 149589 654 ## COG0629 Single-stranded DNA-binding protein 161 63 Op 3 . + CDS 149618 - 149854 353 ## PROTEIN SUPPORTED gi|42518093|ref|NP_964023.1| 30S ribosomal protein S18 + Term 149879 - 149924 5.2 + Prom 149917 - 149976 7.5 162 64 Op 1 9/0.000 + CDS 150022 - 152037 2318 ## COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain 163 64 Op 2 16/0.000 + CDS 152053 - 152508 603 ## PROTEIN SUPPORTED gi|42518096|ref|NP_964026.1| 50S ribosomal protein L9 164 64 Op 3 . + CDS 152514 - 153887 1441 ## COG0305 Replicative DNA helicase + Term 153895 - 153948 7.0 165 65 Op 1 . - CDS 153920 - 155086 997 ## LGAS_0015 hypothetical protein 166 65 Op 2 . - CDS 155093 - 155779 681 ## COG1285 Uncharacterized membrane protein - Prom 155945 - 156004 76.3 + TRNA 155927 - 155999 82.1 # Thr AGT 0 0 167 66 Op 1 . + CDS 156250 - 156630 397 ## LCRIS_00111 transcriptional regulator, xre family 168 66 Op 2 . + CDS 156652 - 157878 854 ## COG0477 Permeases of the major facilitator superfamily + Prom 157944 - 158003 4.2 169 67 Tu 1 . + CDS 158029 - 158361 156 ## LBA0029 integrase + Prom 158446 - 158505 3.7 170 68 Tu 1 . + CDS 158550 - 158801 111 ## LBA0029 integrase + Term 158868 - 158912 -0.9 + Prom 158980 - 159039 14.1 171 69 Op 1 . + CDS 159067 - 160455 1688 ## COG0362 6-phosphogluconate dehydrogenase + Term 160475 - 160513 6.4 172 69 Op 2 . + CDS 160523 - 162073 1289 ## COG0038 Chloride channel protein EriC 173 70 Op 1 . - CDS 162233 - 163543 1187 ## COG0477 Permeases of the major facilitator superfamily 174 70 Op 2 . - CDS 163555 - 164865 1115 ## COG2252 Permeases - Prom 164993 - 165052 10.6 + Prom 164964 - 165023 12.7 175 71 Op 1 2/0.000 + CDS 165210 - 166307 1335 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein + Prom 166353 - 166412 15.0 176 71 Op 2 15/0.000 + CDS 166443 - 167531 1407 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein + Term 167552 - 167588 4.0 177 71 Op 3 24/0.000 + CDS 167599 - 169119 1509 ## COG3845 ABC-type uncharacterized transport systems, ATPase components 178 71 Op 4 26/0.000 + CDS 169128 - 170240 1309 ## COG4603 ABC-type uncharacterized transport system, permease component 179 71 Op 5 . + CDS 170240 - 171196 970 ## COG1079 Uncharacterized ABC-type transport system, permease component + Term 171204 - 171252 13.1 180 72 Tu 1 . - CDS 171226 - 172182 873 ## COG0276 Protoheme ferro-lyase (ferrochelatase) - Prom 172297 - 172356 7.2 - Term 172289 - 172352 13.6 181 73 Tu 1 . - CDS 172358 - 173851 1680 ## COG3104 Dipeptide/tripeptide permease - Prom 173920 - 173979 13.9 + Prom 173882 - 173941 7.1 182 74 Tu 1 . + CDS 174028 - 174732 708 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Prom 174750 - 174809 8.7 183 75 Op 1 3/0.000 + CDS 174854 - 175498 622 ## COG1428 Deoxynucleoside kinases 184 75 Op 2 . + CDS 175511 - 176176 792 ## COG1428 Deoxynucleoside kinases 185 75 Op 3 . + CDS 176198 - 177508 1490 ## COG2252 Permeases 186 75 Op 4 . + CDS 177526 - 178173 430 ## LGAS_1838 metal-dependent membrane protease + Term 178175 - 178222 12.2 - Term 178169 - 178204 5.3 187 76 Op 1 3/0.000 - CDS 178221 - 179381 1135 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 179502 - 179561 7.9 188 76 Op 2 . - CDS 179567 - 180058 274 ## COG0517 FOG: CBS domain - Prom 180085 - 180144 10.7 + Prom 180100 - 180159 7.2 189 77 Op 1 . + CDS 180209 - 181357 1205 ## FI9785_1737 hypothetical protein 190 77 Op 2 . + CDS 181374 - 181670 274 ## LJ1785 hypothetical protein 191 77 Op 3 . + CDS 181733 - 181888 57 ## gi|259500728|ref|ZP_05743630.1| conserved hypothetical protein 192 77 Op 4 6/0.000 + CDS 181907 - 183424 1820 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 193 77 Op 5 7/0.000 + CDS 183421 - 184638 721 ## COG1696 Predicted membrane protein involved in D-alanine export 194 77 Op 6 6/0.000 + CDS 184684 - 184923 431 ## COG0236 Acyl carrier protein 195 77 Op 7 . + CDS 184916 - 187201 2357 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) + Term 187213 - 187264 13.2 - Term 187207 - 187245 -0.2 196 78 Op 1 36/0.000 - CDS 187254 - 189695 1454 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 197 78 Op 2 . - CDS 189705 - 190406 209 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 190513 - 190572 12.4 + Prom 190440 - 190499 15.4 198 79 Tu 1 . + CDS 190602 - 192017 1198 ## COG0531 Amino acid transporters Predicted protein(s) >gi|311091660|gb|AEKJ01000018.1| GENE 1 3 - 5766 4775 1921 aa, chain - ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 1806 1882 278 345 345 74 42.0 2e-12 MKKCHNTKLTSTIYLASLLAGGIYYNNAQVHVYASVENPKFDQPIKVDQYLEDIPFVQAP KVGWGSYKVDQTLDGKKIKLKINGQEHEFAKGITAHADACLIYDLSKIKSNIFETYLGID DTKTGEVEFRIYLDDELYYASGKVNRNNTQHILMNIAGKKQLKIIVDSLGYNGSDHSILA DPKFYFLDLKDKKIPDLANENPGFSYNKINDAPYNLNFEQYYFLKRMGKARLFSYMMTDK SNIKYLNWLFNNLSLLHSYNTASLPRGGNQIGFLKVFKELLDHDPDLKSDSEKQKIAMAV ALEYANGNINFWANSNLKSDPIKRYDIYSTLNNTPGALRPIFKTLSVELLRHVVNAEISD EDIIWIRDKIKRENPQLLFNNDELSNATYKYIAYNPFNKYGDDVQKGGFYGDNPTLEKVV ELGGVCGSVSKFDVVVLKSFGVPANVIGQPGHAAVTYMRDDGSWTRRNEIYSWGRSQGGT ATLLAGGSSGYNTTYNILASDILKDKGNYQQALKYYEFYKNVQPGLLKNSLAEKITTLVP CFVPVYRDQINELKDNRSATAKDYYELSKKILSTFKNYPKVMLDLLSPLKKGFAQDRYLL TDFAINYIQQVDSVTNSIARDVMKEDEYQKEYNSYNSVLGDFSFSGKNRYNLENVHPDTE YSFDGGITWHSSITNSPSLTSSEIAQLNTKYGILLRLKGMKKAIQIKLAKQVLPSFVRAD DQENIIVGLNHNMEYSLDNGQNWIDGNVVPDLSGKCTVLVREKAANKSFASDVKKLEFTN DNQIADDIMLGNMKVVQYSSQQNDTNQAAVNTINGTGTANNFWHTKWAGDSNRYITIGFN KEYTLKKFYYTPRLDNGENGNILKYEIYISNDGKQFTKVKAGEFTYSSPNYKSPKVVELP DGTKTKYFKLKIISAKGTGSYAAATKFAFEIPHEEAVAAYQEKQQKAKQQFNSELVEDLK NFKNNVESLSQLDQAKLCLGDLNLLKTDINKLDTKNINYIQELNKAKKRYDLLRDEIIIK NTIYQKQNDSKLLETFNKNNQQILTKSITDVTDKDINIITSALKQLKEKPEYSQIKTNNS EIILGLERKLLRAQDKKLANEFKQQFKTELELNEKNVSLNDYNNIVVAYYNLLALSSEVQ GDLNNEKTHLYDLLQFLEKNAVSMQNDIEFKKNNNEILSLSVDKITLKNLDKVTEQVNNA FYQYNFLNSFDKARLKASKEHLDALQSKILTFENIKAKENLLSQLQQFKNSFVNESDEIK HSWLQEYNFAKSVATRTVATNVYYQASAILLEKYEELSRTVYLQKDNIAKANKFKERFST LLNKDISKISIDDKKLLASANDQWRRQNEVTLALLTNERAKLDAIEDKIESTQANYHTVI DDNINKLITQLKKDRNNSYSIYKTDIDNILQESELAKKEPDLIKQRELLLDIKKKRSSIL AKQANLKDKVTIIHNSLLPTLKISTNLVTPADRDQINSQLIYLNTLTPDIKASLGDEKLT LENLLNKINEIEQSPNKDKILKLIDQKVKAEHEIRVYSHLSYKEIQNYLKAIEKASDSTT VVAQLQSAQKLHNQRDASAKQELVTLKNKIKSILNDNNLSKMEPDNQAQIKKIKIDDVKL DGMTLGELSELFKYINNEISLLKSKDQSEKEFKQNKINYDEKIKDINQKISEINHKIVKV KECDVNYQKQLVDISNKVDFGLGLNEIDSTIKSLDKLSTNVDASLDKQAKAEKDKLILSI SAAKQKINSMNYLTNEEKADYLAKIDLAVSDDIVNKIVSDAVNKNHEKSISVKPVKPETP KIPSKPEVTVTPETPKTPNVPEVSVKPVKPQTPSVPEVSVTPVKPNTPSVPETSVTPEEP KTPSEPEASVTPVKPKTPSEPEVPVTPEKPKTPSVPEVPVKPKTPSVPEVSVKPVKPNTQ V >gi|311091660|gb|AEKJ01000018.1| GENE 2 5912 - 6307 644 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855101|ref|ZP_04645429.1| ribosomal protein S9 [Lactobacillus jensenii 269-3] # 1 131 1 131 131 252 95 7e-66 MAQQAAYAGTGRRKNSVARVRLVPGNGKITVNKEDVTEYIPYPNLVKDLKQPLALTETEG QYDVIVNVNGGGFSGQAGAIRHGIARALLEVDPDFRGSLKKAGLLTRDPRMKERKKPGLK KARKASQFSKR >gi|311091660|gb|AEKJ01000018.1| GENE 3 6321 - 6764 696 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238853451|ref|ZP_04643829.1| ribosomal protein L13 [Lactobacillus gasseri 202-4] # 1 147 1 147 147 272 89 7e-72 MRTTPLAKTSDIKRKWYVIDATDVALGRLSAAVATILRGKNKPQYTPNVDTGDNVIIINA AKLKLTGRKSTDKIYYHHSDYRGGLRATAAGELLANNPVRLVELSVKGMLPKNTLGHQEF LKMHVYAGEDHKHAAQKPETLDINKLI >gi|311091660|gb|AEKJ01000018.1| GENE 4 6866 - 7648 635 260 aa, chain - ## HITS:1 COG:lin2747 KEGG:ns NR:ns ## COG: lin2747 COG0101 # Protein_GI_number: 16801808 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Listeria innocua # 1 247 1 248 248 238 50.0 9e-63 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG QVIHFDYPGNVIPAKNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSR FTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLEQN GDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNTAPASGLY LYHVFYDDLPKKYNLIAKRD >gi|311091660|gb|AEKJ01000018.1| GENE 5 7649 - 8446 712 265 aa, chain - ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 252 2 253 266 234 47.0 9e-62 MNNILIGRYIPGTSLIHKMDPRGKLITSFLFVMIIFLANNWSTYAVLFVFALLAVCMTKI SFKFFWRGIRPLIWLILFTVIMQLLFTGSGKVLWRVGFLKVTDYGIISSIYMCIRLITII VVSTVFTLTTTSLQIADAIEWLIHPLKYLKVPVGEIALVLSIALRFVPTLMDEATKIINA QKARGSDISTGKFIEKIKKIVPILVPLFIRSLSIALDLAVAMEARGYRDGMPRSRYRQLA WHIIDILNLGSLAILIGLLLLLRRY >gi|311091660|gb|AEKJ01000018.1| GENE 6 8447 - 9298 935 283 aa, chain - ## HITS:1 COG:L76755 KEGG:ns NR:ns ## COG: L76755 COG1122 # Protein_GI_number: 15672260 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Lactococcus lactis # 3 260 2 259 288 264 49.0 2e-70 MAIKFEKVGYTYGRETAFSSLGLNDINTVIEKNTFNSVIGHTGSGKTTLLQALDGLIKIT TGTISLKNMVINVNSDEKKLFILRKHIGLVFQFSENQLFADTVLKDVMFGPINFGISVDK AKQLAEKWLRFVGIGSELFDKSPFDLSGGQMKRVAIAGVLAFEPDVLCLDEPVSSLDPQG RKLIMQLFKKYQQDGHTVILVSHNMDEVYHYSDNIIVMENGTIIKQGSPRKIFEDKNWLD KHKLVRPSILKFIDDLEKVGFKVTKTNDLSNLLGEILQQIGVK >gi|311091660|gb|AEKJ01000018.1| GENE 7 9274 - 10122 424 282 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 11 263 135 384 398 167 36 2e-40 MGYKIVDVNNISYQYYDSSQLALDHVSFTVDSGMWVSVVGPNGSGKSTLTKILDGLLVPK SDKDSHIIIDGIKLSDNTLYDIRNKIGIVFQDPENQFVGATVADDVAFGLENRNIDRNQM IDIVTDSLKQVDMLKFADKAPNMLSGGQKQRVAIAGVLAIKPKIIILDEATSMLDPDGKN IILKLIKKLQNQNNYTVISITHDLEEAIYSDKLLILKAGKVLRYDHPRKIFNDIQLLEKS GLDLPFVFKIKSQLSQMGVNIPEEIIGQKELVNYLWQLSLKK >gi|311091660|gb|AEKJ01000018.1| GENE 8 10306 - 10689 570 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628989|ref|YP_814161.1| 50S ribosomal protein L17 [Lactobacillus gasseri ATCC 33323] # 1 127 1 127 127 224 88 3e-57 MSYRKLGCDSAHRKAMLRALTTQLIMNERIETTETRGKEIRKTVEKMITLGKRGDLSARR QAAAYVRNEIADIHEEKDGLVVKTALQKLFSDVAPRYKDRNGGYTRMYKLAMPRKGDAAP MVIIELV >gi|311091660|gb|AEKJ01000018.1| GENE 9 10714 - 11652 1154 312 aa, chain - ## HITS:1 COG:BH0162 KEGG:ns NR:ns ## COG: BH0162 COG0202 # Protein_GI_number: 15612725 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus halodurans # 1 312 1 314 314 382 63.0 1e-106 MIEFEKPNITVIDQEESYGKFVVEPLERGFGTTLGNSLRRVLLTSISGTALSYIMIDGVL HEFSTIPGVREDVTKIILNLKKLELKLLVDEEKMVEIDVEGPAVVTAADLKVDADVEILN PDQYICTIAEGGHLHMSIAIKNGRGYIPASENKSDDMPIGVIPVDSLFSPIKKVNYQVEN ARVGKRDDYDKLTLELWTDGSITPNDALSFAAKILEEHFKVFMSADMSDQFANVMIEKED KSNEKKLEMTIEELDLSVRSYNCLKRAGINTVQELNNKSEADMMRVRNLGRKSLEEVKNK LTELGLSFSKED >gi|311091660|gb|AEKJ01000018.1| GENE 10 11698 - 12087 635 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518454|ref|NP_964384.1| 30S ribosomal protein S11 [Lactobacillus johnsonii NCC 533] # 1 129 1 129 129 249 97 8e-65 MAAKKTARKRRVKKHVESGVAHIHSTFNNTLVMITDVQGNAVAWSSAGALGFKGSRKSTP FAAQMAAEAATKTAMDQGMKHVEVSVKGPGAGREAAIRALQATGLEITAIRDVTPVPHNG SRPPKRRRV >gi|311091660|gb|AEKJ01000018.1| GENE 11 12108 - 12458 531 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518453|ref|NP_964383.1| 30S ribosomal protein S13 [Lactobacillus johnsonii NCC 533] # 1 115 1 115 115 209 88 9e-53 MARIAGVDLPRDKRIVIALTYIYGIGEPTAKVICEAAGVSEDVRTSDLTPEQQEKLRSEV DKFRVEGDLRREVNLNIKRLVEIGSYRGIRHRRGLPVRGQNTKNNARTRKGSKGKR >gi|311091660|gb|AEKJ01000018.1| GENE 12 12491 - 12607 203 38 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628985|ref|YP_814157.1| 50S ribosomal protein L36 [Lactobacillus gasseri ATCC 33323] # 1 38 1 38 38 82 97 1e-14 MKVRPSVKPMCEHCKIIKRNGRVMVICSANPKHKQRQG >gi|311091660|gb|AEKJ01000018.1| GENE 13 12622 - 12843 297 73 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 71 1 71 72 119 81 1e-25 MAKEDVIEVEGKVIDTLPNAMFKVELENGATILAHVSGKIRMHYIRILPGDRVTVELSPY DLTKGRITYRFIK >gi|311091660|gb|AEKJ01000018.1| GENE 14 12919 - 13569 735 216 aa, chain - ## HITS:1 COG:BH0155 KEGG:ns NR:ns ## COG: BH0155 COG0563 # Protein_GI_number: 15612718 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Bacillus halodurans # 2 215 1 213 217 242 58.0 4e-64 MINLILLGLPGAGKGTASERIVDEFHLAHISTGDMFREAIANETPVGLEAKSYIDNGNLV PDEVTAKLVEERLQQKDTEKGFILDGFPRTTVQAELLEDITKRLDKRLTNVISIDVSEDV LIKRLSARYMCKACGATYNKISNPTKVEGKCDRCGGSEFYQRDDDKPEVVKNRLEVNKKM NTPLKDFYDKKGILSSVNGEQTPDKVFKEIYDILKK >gi|311091660|gb|AEKJ01000018.1| GENE 15 13579 - 14883 1475 434 aa, chain - ## HITS:1 COG:L0333 KEGG:ns NR:ns ## COG: L0333 COG0201 # Protein_GI_number: 15674060 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecY # Organism: Lactococcus lactis # 2 433 3 432 439 421 49.0 1e-117 MFTTLKNAFKDKEIRGKIYYTLFILLLYRIGANIAVPGINAKALAILANSSAKNLIPMLD TISGGGLDTFSIFALGVSPYITAQIVIQLLQMDIVPKLVEWGKQGEVGRRKTNQVTRYLA LVVAFIQSIGITLGFNVLTQMGLVRTQTVETYVQIAIIMTAGTMLLTWLGDEITDKGLGN GVSVLIFAGIIARLPHGLYKLFNDSIINTSSSDRINGILFFIGMLIIIFLVAKFVTWFQQ ADLRVPIQYTRRATLSGSESFLPLKINVSGVIPVIFASSFIVTPATILEAFRLNHGGDQW FQVCQEIFSLQTTYGALIYTFLIVLFTFFYAFVQVNPEKLSENLQKQGAYIPSVWPGKDT QKYVSQILMRISTVGAIFLGLVALLPQLATNMWNLPQSIGLGGTSLLIVIGVVLELSRQI DGLLMKREYVGFIR >gi|311091660|gb|AEKJ01000018.1| GENE 16 14883 - 15323 657 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628981|ref|YP_814153.1| 50S ribosomal protein L15 [Lactobacillus gasseri ATCC 33323] # 1 146 1 146 146 257 87 2e-67 MKLNELKATEGSRRNRKRVGRGTSSGYGKTSGRGQKGQLARSGGKTRLGFEGGQMPLYRR MPKRGFNNINRKEYAIINLNDLNKFETGSEVTIDSLKEAGIVKKELAGVKLLANGKLDVK LTVKVNKVSESAKKAVETAGGTVEVI >gi|311091660|gb|AEKJ01000018.1| GENE 17 15354 - 15539 269 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525640|ref|ZP_03955689.1| 50S ribosomal protein L30 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 108 86 2e-22 MTELKVTLIRSAAHRLPNQRKVVKALGLGKVSSNVVLPDNAATRGALLKIAHLISVEEVS K >gi|311091660|gb|AEKJ01000018.1| GENE 18 15552 - 16064 790 170 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518446|ref|NP_964376.1| 30S ribosomal protein S5 [Lactobacillus johnsonii NCC 533] # 1 170 1 174 174 308 91 9e-83 MANHNDSRKDRKKDDIEDQLVAINRITKVVKGGRRMRFAAVVVVGDRKGHVGFGTGKAQE VPEAIRKAVEAGKKRMIEVPVVGTTIPHDVLGHFGSGSIMLKPAEAGSGVAAGGAVRIVM DLAGISDVTSKSLGSNTPINVIRATMDGLKKLKTREEVLKLRESAKSLED >gi|311091660|gb|AEKJ01000018.1| GENE 19 16082 - 16441 535 119 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628978|ref|YP_814150.1| 50S ribosomal protein L18 [Lactobacillus gasseri ATCC 33323] # 1 119 1 119 119 210 89 3e-53 MISKPDKNKLRAKRHRRIRGKISGTAERPRLSIFRSNKNIYAQLIDDVEGVTLASASTND KAITAEGSKIEQAAQVGKALAEAASKKNIKTVVFDRSGYLYHGRVAALAEAARENGLEF >gi|311091660|gb|AEKJ01000018.1| GENE 20 16468 - 16998 824 176 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227888838|ref|ZP_04006643.1| 50S ribosomal protein L6 [Lactobacillus johnsonii ATCC 33200] # 1 176 1 176 176 322 90 1e-86 MSRIGLKVINVPESVTVTKNGDNITVKGPKGELTRYFDPRIIFEQKDGEITFSRSSESDK ALHGTSRANLAAMIEGVNTGYVKKLTLVGVGYRANAQGKKLTLNVGYSHPVEFEAPEGVT VTTPAATTIQIEGISKQVVGQFAAEIRDVRPPEPYKGKGIRYEDEYVRRKEGKTGK >gi|311091660|gb|AEKJ01000018.1| GENE 21 17023 - 17421 632 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628976|ref|YP_814148.1| 30S ribosomal protein S8 [Lactobacillus gasseri ATCC 33323] # 1 132 1 132 132 248 93 2e-64 MVMTDPIADYLTRIRNANMAKHESVVIPASSMKKSLSEILKQEGFIRDYQVEEDNKQGLI TVFLKYGPNNERVISGLKRISKPGLRNYVSAENLPKVLNGLGIAIISTSAGIITDKEARE KNVGGEVIAYVW >gi|311091660|gb|AEKJ01000018.1| GENE 22 17448 - 17633 332 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518442|ref|NP_964372.1| 30S ribosomal protein S14 [Lactobacillus johnsonii NCC 533] # 1 61 1 61 61 132 98 1e-29 MAKTSQIVRNHRPAKFSSREYTRCERCGRPHSVYRKFKLCRICLKDLAHKGQIPGLKKAS W >gi|311091660|gb|AEKJ01000018.1| GENE 23 17649 - 18191 832 180 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518441|ref|NP_964371.1| 50S ribosomal protein L5 [Lactobacillus johnsonii NCC 533] # 1 180 1 180 180 325 90 1e-87 MANTLLEKYKKEIAPALKEKFNYSSTMQIPKIEKIVLNMGVGDAVSNAKNLDEAVEELTL ISGQKPLITKAKKSIANFRLREGMSIGAKVTLRGDRMYDFLYKLINVSLPRVRDFRGVSS RSFDGRGNYTLGVKEQLIFPEIDYDKVNRVRGLDVVIVTTAKSDEEAHELLAQFGMPFSK >gi|311091660|gb|AEKJ01000018.1| GENE 24 18206 - 18448 343 80 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518440|ref|NP_964370.1| 50S ribosomal protein L24 [Lactobacillus johnsonii NCC 533] # 1 78 1 76 79 136 88 6e-31 MFVKTGDKVKVIAGNDKGKEGIVLSVNAKTNRVVVKGIHKVKKHEKPSQTNANGGVVEKE GSIHVSNVKVIEKAKKEDKK >gi|311091660|gb|AEKJ01000018.1| GENE 25 18469 - 18837 585 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518439|ref|NP_964369.1| 50S ribosomal protein L14 [Lactobacillus johnsonii NCC 533] # 1 122 1 122 122 229 96 5e-59 MIQHESRLKVADNSGARELLVIKILGGSTRKTGNIGDIVVCAVKQATPGGVVKKGDVVKA VIVRTKSGARREDGSYIKFDENAAVIINADKSPRGTRIFGPVARELREHDFMKIVSLAPE VL >gi|311091660|gb|AEKJ01000018.1| GENE 26 18866 - 19132 425 88 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518438|ref|NP_964368.1| 30S ribosomal protein S17 [Lactobacillus johnsonii NCC 533] # 1 88 1 88 88 168 93 2e-40 MSETNERNRRHVYQGRVVSDKMDKTITVVVDTYKNHPVYKKRIKYSKKYYAHDEKNEAKI GDIVRIMETRPLSHAKRYRLITIVKKSI >gi|311091660|gb|AEKJ01000018.1| GENE 27 19155 - 19352 291 65 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628971|ref|YP_814143.1| 50S ribosomal protein L29 [Lactobacillus gasseri ATCC 33323] # 1 63 1 63 69 116 93 6e-25 MANLMKTKDIRALTTDQMLEKEKQYKEELFNLRFQQATGQLENTARLKKVRKNIARIKTI LSENN >gi|311091660|gb|AEKJ01000018.1| GENE 28 19330 - 19767 690 145 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628970|ref|YP_814142.1| 50S ribosomal protein L16 [Lactobacillus gasseri ATCC 33323] # 1 144 1 144 145 270 93 3e-71 MLVPKRVKHRREFRGKMRGEAKGGKTIAFGEYGLQAVESSWITNRQIEAARIAMTRYMKR GGRVWIKIFPHKSYTAKGVGVRMGSGKGAPEGWVAVVKRSKIMFEIGGVSEDVAREALRL ASNKLPIKTKFVKKNVEVGGESNED >gi|311091660|gb|AEKJ01000018.1| GENE 29 19770 - 20444 1025 224 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518435|ref|NP_964365.1| 30S ribosomal protein S3 [Lactobacillus johnsonii NCC 533] # 1 224 1 222 222 399 87 1e-110 MGQKINPNGFRLGINRDWEAKWYAGKDYANNLNEDLRIRKYIEQKLADASISNVEIERAA NRINLSIHTAKPGMVIGKGGKEVEELRTRLNTITGKNVHINIVEIKKPDLEAKLVGESVA KQLEARIAFRRATRKATQRSMHVGAKGIKVQTAGRLNGADMARREWHTEGSVPLHTLRAD IDYAWVEAATTYGQIGVKVWINRGEILPQRKNKPVASKKAKGGN >gi|311091660|gb|AEKJ01000018.1| GENE 30 20459 - 20812 521 117 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161506878|ref|YP_001576832.1| 50S ribosomal protein L22 [Lactobacillus helveticus DPC 4571] # 1 117 1 117 117 205 91 1e-51 MAEQINSARSEARTVRIAPRKARLVVDLIRGKSVAEALAILEFTPRSASPIVKKVLKSAI ANAEHNYDLESANLYVSEAYVNEGPTLKRFRPRAKGSASPINKRTSHVVVKVSVKND >gi|311091660|gb|AEKJ01000018.1| GENE 31 20831 - 21115 438 94 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518433|ref|NP_964363.1| 30S ribosomal protein S19 [Lactobacillus johnsonii NCC 533] # 1 93 1 92 95 173 91 6e-42 MSRSIKKGPFADSHLIKKIEAQESSEKKQVIKTWSRRSTIFPSFVGYTIAVYDGRKHVPV YVTEDMVGHKLGEFVPTRTFRGHKSTADKATTTK >gi|311091660|gb|AEKJ01000018.1| GENE 32 21138 - 21974 1356 278 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227521625|ref|ZP_03951674.1| 50S ribosomal protein L2 [Lactobacillus gasseri JV-V03] # 1 278 1 278 278 526 92 1e-148 MAIIKYKPTTNGRRNMTTSDFAEITKKKPEKTLLESQSHKAGRNSYGHITVRHRGGGHKQ KYRIIDFKRNKDEVKAVVKAIEYDPNRTANIALVHYTDGVKSYILAPKGLTVGTVIESGK GSDIKPGNALPLADIPAGTEIHNIELKPGKGGQLVRSAGTSAQVLGQDGRYTLVRLQSGE VRKILSTCRATIGLVGNEQHSLIQLGKAGRSRWLGKRPQSRGSVMNPNDHPHGGGEGKAP VGRTQPMTPWGKKSRGIKTRNSKASSEKLIIRHRKGNK >gi|311091660|gb|AEKJ01000018.1| GENE 33 21990 - 22292 454 100 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628965|ref|YP_814137.1| 50S ribosomal protein L23 [Lactobacillus gasseri ATCC 33323] # 1 96 1 96 98 179 93 8e-44 MDAHDIILRPVVTEKSMDLMDDKKYTFDVLVSATKTQVRNAVEEVFDVKVKNVNIMNVRG KDKRVGRYTGKTARRRKAIVTLTEDSNSIKIFNDNESKEK >gi|311091660|gb|AEKJ01000018.1| GENE 34 22292 - 22906 551 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167755913|ref|ZP_02428040.1| hypothetical protein CLORAM_01433 [Clostridium ramosum DSM 1402] # 1 203 2 206 207 216 50 5e-55 MAIKVIDQKGKSVGEVDLNKCIFEVEPNDSVVFEAIIRQRAGKRQGTHATKNRSAVSGGG KKPWKQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKVDMPRKARRLAIKSVLSQKVADG NLIVLDQLTLATPKTKDLKAIFSAIKVSGKVLVVSDDKNVQLSGKNLPQVKVVPVNGLNV VDAVDYEKLLLTQDAIKRIEEVLA >gi|311091660|gb|AEKJ01000018.1| GENE 35 22921 - 23550 1014 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518429|ref|NP_964359.1| 50S ribosomal protein L3 [Lactobacillus johnsonii NCC 533] # 1 209 1 209 209 395 93 1e-109 MTKGILGRKVGMTQVFSKNGILVPVTVIEATPNVVLQVKTNESDGYEAVQVGYQDVREVL SNKPAKGHAAKAKTAPKRFIREIRDVELEGYEVGSEIKVDTFSEGDVVDVTGTSKGHGTQ GNIKRWGQSRGPETHGSRYHRIPGSMGSIINRVPKGKKLPGHMGGKQVTVQNLVIEKVVP EKNVLLIKGNVPGAKNSLIIVKSAVKAAK >gi|311091660|gb|AEKJ01000018.1| GENE 36 23578 - 23886 494 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518428|ref|NP_964358.1| 30S ribosomal protein S10 [Lactobacillus johnsonii NCC 533] # 1 102 1 102 102 194 96 2e-48 MASQQIRIRLKSYEHSILDESAAKIVATAQRTGAEISGPVPLPTERTLFTVLRSPHKNKD SREQFEIRTHKRLIDIVNPTPKTVDSLMKLDLPSGVDIEIKL >gi|311091660|gb|AEKJ01000018.1| GENE 37 23917 - 24180 198 87 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTSSAKITGTPLWQCSRAFRNLLRLSSTACYCIATRILLYKIFIAISIFCLSFFIFYIKN RLLIDSLFFMIFTFENACQTMDLLVDY >gi|311091660|gb|AEKJ01000018.1| GENE 38 24131 - 25096 1136 321 aa, chain - ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 5 315 7 316 317 416 66.0 1e-116 MSQLDNEIKIFALNSNKPLAKSIADTVGVELGKSDVKRFSDGEIQINIDESVRGKDVFLV QSTSAPVNDNLMELLIMIDAVKRASAKTINLVMPYYGYARQDRKTRAREPITAKLVADML QAAGATRILSLDLHAPQIQGFFDIPVDNLMGAPLLADYFLSHGLEKDAVVVSPDHGGVTR ARKLAEFLKTSIAIVDKRRPKANVAEVMNIIGDVKGKRAIIIDDMIDTAGTITLASQALI DAGATEVYASATHAVLSGPAIQRLNDSPIKKLILTDSINQPEEKQLSKAELVSVGPLMGR AIKFIINNQPVSPLFDTRFQK >gi|311091660|gb|AEKJ01000018.1| GENE 39 25190 - 26575 1479 461 aa, chain - ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 3 448 4 449 457 501 57.0 1e-141 MNKYVVILAAGKGTRMKSKLYKVLHQVCGKSMVEHVVDAAQGTNPDKIVTVVGNGASDVK SVLAGKSEFAFQKEQLGTGHAVLATADLLKNLSGYTIVTTGDTPLFTAATFNELFEQHIQ HKNSATVLTAIVKDPFGYGRIIRDAAGNVLRIVEQKDCSASESAINEINTGVFCFDNKEL FSALQKVTNHNAQKEYYLTDVLEIMREKGLVVGACQMADYTESLGVNDRIALAEATKLMQ RRINEQHMKNGVTLIDPANTYIDCDVQIGSDTIIEPNVVIKGNTIIGNECYIASGSRLVN ARIGNNVTITSSTIVDSTMHDRSDIGPNSHLRPESEVMSGSHIGNFVEVKKATIGENTKL GHLTYVGDATLGKDINVGCGTIFSNYDGVEKLHTNVGDHTFIGAGSTLIAPVNIADHAFI AADSTITKDVAKYDMAIARGRQVNKEGYWHKLPLAKNKAWD >gi|311091660|gb|AEKJ01000018.1| GENE 40 26609 - 27445 915 278 aa, chain - ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 266 3 268 272 285 53.0 5e-77 MKRSERLVDMVQYLTTHPHTLISLPFFATRYDSAKSSISEDLAILRNTFAKYEIGILETV AGVAGGVRLIPFIGFNTAEDYLKQLADRIEDPERILPGNFIYLSDVLGDPQELRHVGELI ATKYAYSNVDYVMTIETKGIAIANSVSRLLNVPYVLVRRRPKITEGATVSVNYVASSSDR VEKMELAKRSLPEGSNVLIVDDFMKGGGTLNGMEELTKEFKCHVVGMCVLCEASNPVNKV VDDYQTLVKITEVDRSKGIIKAKPGNLLEQIDFQKFPK >gi|311091660|gb|AEKJ01000018.1| GENE 41 27583 - 27825 313 80 aa, chain - ## HITS:1 COG:SA0452 KEGG:ns NR:ns ## COG: SA0452 COG4466 # Protein_GI_number: 15926171 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 77 1 77 87 96 53.0 1e-20 MPMSLMAIKEKLDNHLGQELIVIAQAGRKKVIRRKGVLKKTYPAVFVVDLDQQQNNFERV SYSYTDLLTKNIELDFDVIS >gi|311091660|gb|AEKJ01000018.1| GENE 42 27903 - 28790 871 295 aa, chain - ## HITS:1 COG:lin0227 KEGG:ns NR:ns ## COG: lin0227 COG0030 # Protein_GI_number: 16799304 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Listeria innocua # 7 288 5 285 295 206 45.0 5e-53 MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPG IGSLTEQLLLAGAKVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATD IADYFDVNRPISVVANLPYYITTPIILKLMHSPVKISQLTLMMQKEVAERISASHKSKAY GPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAF SQRRKTLNNNLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR >gi|311091660|gb|AEKJ01000018.1| GENE 43 28780 - 29343 698 187 aa, chain - ## HITS:1 COG:SP1990 KEGG:ns NR:ns ## COG: SP1990 COG1658 # Protein_GI_number: 15901813 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Streptococcus pneumoniae TIGR4 # 6 184 2 183 186 138 43.0 7e-33 MELQNKKRFDAVVIVEGRDDTKRLKQYFPGIETIETNGSEVSQQTITTIVNIAKKRDVII FTDPDFNGERIRKIILKAVPTAKQAFITRKEGEPTKRGNSLGVEHASKAALQRALSDLHE VDIKANAISIQQYDELGLGMGDNARKLREKVGIALGVGYGNAKQFYKRLAMFGISYNKLK EVVKHVK >gi|311091660|gb|AEKJ01000018.1| GENE 44 29327 - 30100 771 257 aa, chain - ## HITS:1 COG:L87336 KEGG:ns NR:ns ## COG: L87336 COG0084 # Protein_GI_number: 15672669 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Lactococcus lactis # 1 257 1 257 257 235 44.0 8e-62 MELFDSHMHLNDEPFRGKEEYYLKRAKQLNVVSGVVAGQDADFNRRAIELAERFSNLYAT VGYCPDVATKVDAKAYDVLIKELTKDKVVALGEIGLDYYWDESHRSVQRDVFAQQLDLAY QIKKPVNIHTRDAFEDTYDILSQSKVGEYGGIIHNFNGDPNYLKKILDLGMYVSFSGVVS FTKAVDVHASAKAVPLDRFLIETDAPYLTPKPYRGRQNETGYVYYVAQAIADIKNISLEE VALHTFNNAMRIYGITK >gi|311091660|gb|AEKJ01000018.1| GENE 45 30100 - 32079 2282 659 aa, chain - ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 538 4 542 549 729 65.0 0 MAEKKTFYITTPIYYPSGKLTIGNAYTTVAADAMARYKRNEGFDTFFLTGTDEHGLKIEQ KAEAQGIKPQEFVDNMALSYKKLWKLLDISYDKFIRTTDQEHVLAVQKIFERLLKQGDIY LGEYQGWYSVEDEEYFTESQLAEVYKDDSGKVIGGKAPSGHEVKLIKEPSYFFRMSKYAD RLLEYYKENPQFILPNSREKEMINNFIKPGLEDLSVTRTTVDWGIPVPSDPKHVVYVWID ALSNYISALGYSSEDDSLFKKYWPADVHLVGKEIVRFHTIYWPIMLMALDLPLPKQIFGH GWVLMKDGKMSKSKGNAVYPEMIVNRYGLDALRYYLMRAIPFGSDGIFTPEDFVERVNFD LANDLGNLLNRTISMINQYQDGLVDPVSATEDEYGKQLKELANHTINLYHEQMDALHFSK ALDTIWGLISRANKYIDETTPWVLNKEGKVDELKCVMSNLAESLRLIALLIRPIMTQSPV HIFEQLGLSLDDANATSLCWGAYGWQNYVTKNPKPIFPRLNNEEEIKYIKQEMAKAKPKK STRSEQKQTNSEITIDDFAKVQLQVAEILAVAQVKGSNKLLAFTLDLGEKEPRQILSGIA AFYPEPKELVGKKVLAVTNLKPRKMLGQLSQGMLLSSEKNGVVKLVIVSNEHENGALLG >gi|311091660|gb|AEKJ01000018.1| GENE 46 32194 - 34881 2379 895 aa, chain - ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 32 888 41 903 910 804 49.0 0 MLKINTSPKNQTNDTSLVKKIAREDKVATLYRMQTTLNGLTQEEASKRLAKNGPNEIAVD KHNNKLHFLFEAFLTPFTIVLLILATMSLFTNYIFVAPSDKDLSTVIIMLTMVFISGITS FVQNVKTNDAVEALLNMVSVTTNIRRSNQDREYPTKEVVVGDIINVAAGDMVPADMRLLR SKDLFCSSSSLNGESRPVEKIANIKPTDAQIDEYLDYPNILYEGTTIVSGSGMGVVFATG DNTVFGRVAQSISKNNIKETTFDVGIKHISELLLTMTAVIAPLVFLINGLTKCDWLSALI FAIATAVGLTPEMLPVIVTSNLVKGSVEMSKHGTIVKKMNSIQNFGSADILCTDKTGTLT QDKVVLERHYNLALKEKKHVLELSYLNSYYQTGMKNLIDKAIIEAAGDELDINDLQHRYN KIDEIPFDFKRRRMSVVVANDNNEHILVTKGAAEEMISCSTKMEVDGQVKPLTDQRKKQI LADIAEMNDDGLRVVLLGYKMNPAPVGEFSVDDESELTLIGFLAFLDPPKESAKAVIENL KHDGITIKILTGDNAAVTRNVGLQVGLNVDTIYTDSDFAGKTHEEMKKMVEECDIFVKLS PESKAKIIQLLKENGHTVGYMGDGINDAPAMKSADVSISVDTAVDIAKKSADIILLHKDL LILENGVRIGRQIFGNTMKYIKITLSSNFGNILSILVASSFLPFLPMLPLQLLILDLLYG TSCLSIPFDTMDKQYLDVPRKWSTRKLPKFMFYFGPVSSIFDIITFALLFFVICPTVAGG QYSQLAASQKTIFATVFTAGWFIESLWTQEIVIHALRDPKIPFLQQRPSVIVALSTILTS IFGTVLPFVPSIAKMMKFGELPGYYIILVFILLVMYILLTTIIKKKYLKSEQFLI >gi|311091660|gb|AEKJ01000018.1| GENE 47 35213 - 35782 363 189 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0203 NR:ns ## KEGG: LGAS_0203 # Name: not_defined # Def: beta-propeller domain-containing protein # Organism: L.gasseri # Pathway: not_defined # 1 177 1 183 195 83 33.0 5e-15 MKTRVLLFVFVLWISLCFTSVSAVASGPIKVSDKLIERINHKNKCYAKTPLKIRLTLISM PSQHSEQVQKVKNNQVLILLMDKNLRIKVGSKMQKILSVSKCNAIILYVSKYLRSNDKIK QNQGLEKAVNAIYTIIDKEYNLPFDSSDLTSKEMDKILHPQRNNLIWTVVVVVIFSFIIT YTQRRRFSL >gi|311091660|gb|AEKJ01000018.1| GENE 48 35779 - 36252 504 157 aa, chain - ## HITS:1 COG:SPy1823 KEGG:ns NR:ns ## COG: SPy1823 COG2131 # Protein_GI_number: 15675651 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Streptococcus pyogenes M1 GAS # 4 136 3 135 153 187 62.0 8e-48 MVRDRISWQQYFMMQALVISQRSTCDRALVGSVLVKDKRMIATGYNGSVTGEPHCDDEGH LMVDGHCVRTIHSEMNALIQCAKNGISTEGCAIYVTHFPCFNCTKALVQAGIVEVNYYYD YRDNPLVMALLSDKHIKVQKINIDRKYLHNLEKSLEI >gi|311091660|gb|AEKJ01000018.1| GENE 49 36274 - 37293 1288 339 aa, chain - ## HITS:1 COG:SP2229 KEGG:ns NR:ns ## COG: SP2229 COG0180 # Protein_GI_number: 15902033 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 2 337 3 341 341 454 65.0 1e-127 MKKVLLTGDRPTGKLHIGHYIGSLKNRVKLQNSGEYDPYIMIADTQALTDNARNPEKIKN SLIQVALDYLAVGLDPEKSTIFVQSQIPALFELTAYFMDLVTVARLQRNPTVKNEIKQKG FNDSLPIGFLNYPVSQAADITAFKASIIPVGDDQEPMLEQTREIVRTFNSVYGKEILVEP KGYFPPKGHGRLPGIDGNAKMSKSLNNAIYLSDDSETVKKKVMSMYTDPDHIHVQDPGKV EGNTVFTYLDVFDPDKDKVASLKEQYQKGGLGDVKLKQYLYQVIEAELMPIRERRANFAK NTAEVYEMLQEGSRKANVVANQTLAEVREAIGLNYFDHK >gi|311091660|gb|AEKJ01000018.1| GENE 50 37547 - 38218 413 223 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0198 NR:ns ## KEGG: LGAS_0198 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 4 222 1 219 220 139 45.0 8e-32 MKTVNTPKSFQGNIVRYSVYLVIYLFLYACIYQVIHIARVNWLIDIPILIFVLLGLFFYT RRYNKEQRYFEKKTEITLASDYKLIVGATILLIAFRLLIAYFQFKKYVPFTGNQLFYLQH ENNDLFWLLIIYQGLFLSVMQQFLGIGFFFNYFFRKQTFFHAMVGILMSALFFAFLNLQF SLLWFIINFAFGYFLALFYLYSQSFLWTIYFAILNSIFWIILL >gi|311091660|gb|AEKJ01000018.1| GENE 51 38332 - 38646 142 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259500877|ref|ZP_05743779.1| ## NR: gi|259500877|ref|ZP_05743779.1| hypothetical protein HMPREF0520_0387 [Lactobacillus iners DSM 13335] hypothetical protein LineA_01515 [Lactobacillus iners AB-1] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners LactinV 11V1-d] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners LEAF 2062A-h1] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners LEAF 2052A-d] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0520_0387 [Lactobacillus iners DSM 13335] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners LactinV 11V1-d] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners LEAF 2053A-b] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners LEAF 2052A-d] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners LEAF 2062A-h1] # 1 104 1 104 104 137 100.0 2e-31 MNKKVTIACTTGLSASILVTKIKQLITDDAITIESTTASQIADIIKQQKTDLLLLAPQLA YLRDQVNELILQKSNNKILVRYISIDLYSQLNANQTLEQIKKIL >gi|311091660|gb|AEKJ01000018.1| GENE 52 38669 - 38986 159 105 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNSFIERRVVVCQQDIFIKNCVYKKFATRQLITCQQTHNRWLYYIATCFYIHGLVTFINY FVSSFKRLMSPLNLIFETTKKDLTLKAFFCDVSVILYTFILNLFN >gi|311091660|gb|AEKJ01000018.1| GENE 53 39193 - 39894 232 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 202 1 212 245 94 29 4e-18 MIDVSNLTIGYKDTTVVKNLDFKLNKGEFIALIGANGAGKSTLINTLIGINTPLSGKISW ELKSTKKNMFNDVGFSPQSQLIDWYTNVLDNVIQGPLLAGYNLSTAQKYAKEALQLLDLY SLKDKAVDHISGGQQQRVQIAREIARKPKLYILDEPTTGLDVETSENLFKYLKKEVEKGA LVLTSSHDLTLLEDYATQVLFINDHVQKYFGSLNNFLNDSTSLREKYLKERGK >gi|311091660|gb|AEKJ01000018.1| GENE 54 39895 - 40695 718 266 aa, chain + ## HITS:1 COG:SP1063 KEGG:ns NR:ns ## COG: SP1063 COG0842 # Protein_GI_number: 15900933 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 230 1 230 266 142 34.0 8e-34 MNPKQFRHQSLGLKSIKIVANNEWRAFKHNKGLLLSMLMEPLITYGLLVMALNENLSAVH YAGLTISYNKYALTGVLTFFMTTQMSQAMYRSTVDKEYGLLAIKFTNGVQPWHYITGMSF FPMIGLLFQSGILLILGGFTGGIYNIGLLLLSFLVLLISLEFWSALGIILSTRISSYEQR DVVMTLLFSPISYAAPTLYVFNSHSPFIIKVLSAINPLSYQLKAIRTVAFGIFNWLDILI AIVITLFMIVIAQFILKRMPLTLSER >gi|311091660|gb|AEKJ01000018.1| GENE 55 40788 - 41249 539 153 aa, chain - ## HITS:1 COG:CAC3198 KEGG:ns NR:ns ## COG: CAC3198 COG0782 # Protein_GI_number: 15896445 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Clostridium acetobutylicum # 7 153 9 158 158 90 41.0 1e-18 MVYFQKMTPEGYKKIETEIAELKKDRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQS RLRFLNKQLQYAQIVQKNNDGVVDLGSQVEIQFEDEEEIEPYTIVGTLEADVIDNKISFD SPLGAALMHKKAGDLVKVNAPAGSYQVRIISVK >gi|311091660|gb|AEKJ01000018.1| GENE 56 41412 - 41885 429 157 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309809141|ref|ZP_07703014.1| ## NR: gi|309809141|ref|ZP_07703014.1| conserved domain protein [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners SPIN 2503V10-D] # 1 157 60 216 216 243 98.0 4e-63 MKYQTSGKLIIIRAIYSIVMIAILAIIICSQYLLKLSSEMHNIITYLAIVLIIFLLILML IYTPLEYKMLGIKINDSGVIIHRGLIVRKKIYIAWSKIYTVTKSNGPLELLTNTKSVSVV TLANEITIPAINKKQADEFIKCMNQAIKEHTNENTSY >gi|311091660|gb|AEKJ01000018.1| GENE 57 41866 - 43293 1076 475 aa, chain + ## HITS:1 COG:BS_ydbT KEGG:ns NR:ns ## COG: BS_ydbT COG3428 # Protein_GI_number: 16077527 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 56 366 63 382 493 68 24.0 3e-11 MKTRHTSPLPIFLYLLLCIIIAPIFIWLGLKHAQFLHDLSYFKYIFLAPLTKLFMSIYYW LNFKYYIDNEKIIIQKGIFNISQRQFLIKNVRQSNQHTPIIFRIFKHTNLVVDTGVNSDE EGTLNFNCISLLECKRIKDLINLGGTNESKNSLKQFIKGDFSANQNERLLFKTNILDVML SSLTSINIFAYISIIAIVTPLIDNINLHHYLPNFIYTYIKNSTLFWATATILVFCFLLIN QFIIYGNFKLLDDKDTFYSINGFIEHRTNSFKKIYIKTIAIRQNLIMQLLGIHTVETYSA SPAITQDNNANRNTFLPFIKTTPMYENLHKFFPKFSFKNVALENNSALLKRLSIIFFVPF IILLIIAIAKQNLYIFIICGVILISYLIQIIHMIFTNIIISKNTIISRTGMLNKICLYTL ISDVEFFAIKQGPLQWLLNTYSITIVIRKSPVAFITIPFIPPIKKQELLDELKKR >gi|311091660|gb|AEKJ01000018.1| GENE 58 43364 - 44674 1728 436 aa, chain + ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 1 436 1 437 441 394 45.0 1e-109 MAHELTFEELKDFQESFNNARNKVVARAAMKSGLLEASFNPELGDKLNHVFSIEVDTENV TNQQQSGRCWLFSTLNTLRHEFGVKHKVKNFTLSQAYNFFWDKIERANRFYDEIINSANQ PLEDRTVQEYLRFAGEDGGQWAMAASLVQKYGVVPSYAMPETYNTNHTAALAESLGRKER KDALVLRKLVQEGKLEEVEAKRKEFLNEVYRMTALAVGEPPKTFDLEYKDDDKKYHLDKN LTPVEFFKKYINFDFSDYVCLTNAPDHEYNKLYSLPFEDNVNGGIPITFLNVPMDVLRKA TIAQLKDNETVWFGNDVGKQKDNKTGYLDTDLYQLDQLFDVDTTMTKKERLETREGTVSH AMTITGVDLDDETVRKWKVENSWGDKIATKGYFTMSDQWFEEFVYEVVVHKKYLTDEQKQ IAQSEPEPLKPWDSIA >gi|311091660|gb|AEKJ01000018.1| GENE 59 44808 - 46757 2185 649 aa, chain - ## HITS:1 COG:L49741 KEGG:ns NR:ns ## COG: L49741 COG3590 # Protein_GI_number: 15673785 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Lactococcus lactis # 21 649 3 627 627 456 40.0 1e-127 MTNINIRGGIGNIIEPDTNARPQDNLYLAVNSEWLKKAEIPSDRSRTGSFDKIDENLEKQ LMKDFSEFAKASKELPEVKNFDKAVELYKIANNFEKRNADGAKPIQLDLKLLEGLRDLND FNLKAADLTKAAFTLPFNFSVQTDMKNTKVNALHFSGPGLFLPDTTVYKTDSAKQLLDVF EKQSVNLLHMAGIDETVAKKYVQDAISYDARLAEVVKSTEEWADYPAMYNPTDISDFEAK FSSFKIDQYLNELFPEKPNRIIVAEPRYLDNVEKLINNNLFDEIKGWLIVEFINDVACYL SQDFREAAFPFSQALSGQPELAAGEKQAYRIASGAFSEVVGVYYGQTYFGSEAKADVLDM IHNMIDVYEKRIAENEWLSQATKDKAITKLRALILKVGYPSKIKEYYNRLQIMTEKTGGT LYSNMSKISQASLQYELEQLYKPVDRTVWLMPGHLVNACYDPQRNDITFPAAILQKPFYS LEQSRSTNYGGIGVVIAHEISHAFDNNGAKFDEFGNMKNWWTEQDAIEFKKRTQAEIDLF DGIEYGPVTLNGKQIVSENVADQGGLTAAVEANKIEHGDMKELFENFARVWANKQYSESI KTQVAVDVHAPGPERANVQSQCQEEFYKAFDVKPEDGMWLDPEKRVVIW >gi|311091660|gb|AEKJ01000018.1| GENE 60 46872 - 48092 1199 406 aa, chain - ## HITS:1 COG:BH3282 KEGG:ns NR:ns ## COG: BH3282 COG0477 # Protein_GI_number: 15615844 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 16 389 5 378 401 177 32.0 3e-44 MKTAHGTRPRDEINLVWLLLGELLDWIGASFIWPLTSVYLNKNLHVSLAIVGIVILCNCL ANMVGSVIAGWAYDRYNPYYLLIAGASIDATVLFCIALNHSWPIYWFWMTLTGFLAGWNG ALINSIATSIHSHPSRYVFNMLFFAQNLGVVLGTLFVGYLYDYSITMLFVIAALLFVGVS INAILNYRPSIQFHKERLAAKIHNQQKIKYEKMPMNNFKMTFGLFITIGIIWLMYMNWES NLSVYMVSLGIPFHLYSFLWTINAGIIVVIQIFMSRYPNIFKTLFQQIVFGISMFAISFI TLIFAKDFFHFVLSMITLTLGEATAMPAIPAYINDLSPTSSKGKYQGLTLSTSSIGRALG PLFGGIVIDNWGYINFFIVAAIGIFLTLVLIGPLHKQLKKQFVLYK >gi|311091660|gb|AEKJ01000018.1| GENE 61 48195 - 48908 640 237 aa, chain - ## HITS:1 COG:SP0205 KEGG:ns NR:ns ## COG: SP0205 COG0602 # Protein_GI_number: 15900141 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pneumoniae TIGR4 # 54 235 3 183 196 268 71.0 5e-72 MPERDKNKQDGPDIRSNLIKVNVGGDTLFVDSNQYRLKRRKAKYIDTKQRQPKNPKPQEW ISEKYSQHKIADYKPFNFVDGEGVRCSLYVSGCLFDCPGCYNLAAQNFNYGMPYTQELED KIIADIAQPYVQGLTLLGGEPFLNTWVCLKLINRMRKEFGHDKDIWSWSGYTWDELQLET DDKKEMLSKIDILVDGRFLDPLKDLTLQFRGSSNQRIIDVQKSFAAGHVVIWDKLVR >gi|311091660|gb|AEKJ01000018.1| GENE 62 48933 - 51122 1964 729 aa, chain - ## HITS:1 COG:SPy2110 KEGG:ns NR:ns ## COG: SPy2110 COG1328 # Protein_GI_number: 15675860 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pyogenes M1 GAS # 18 717 15 723 732 949 63.0 0 MLKQREAKIITSKVSIPLKATKRDGSVYDFALYKLRMVIDNLGLAKNEQVILSAILSQLA SKENVTTVEIASAFVRVLREMGFTQAAQQYIDYRKQDEANFVRQTGTTDRLHRLLEHDPT IVNENANKDSRVFSTQRDLTAGTVGKTIGLTLMPEHIAKAHLRGDIHWHDLDYTPLSPMT NCCLIDFKEMLSHGFTIGNAEIESPHSIQTATAHMSQIIANVASSQYGGCSADRVDEVLA PYARKNYQKHLDEAAEFFDDQEKIKAFAKKRTKKDIYDAMQALEYEINTLFSTQGQTPFT TLGFGLGTDWFEREIQKSILKIRIEGLGRTSRTAIFPKLVFTLKRGLNLNPTDPNYDIKQ LALECSTKRMYPDVLMYDTIVAITGSFKVPMGCRSFLQGWKDENGKEVNAGRMNLGVVTI NLPRIAMESKGDIDLFWSILKERLQTAHEALQIKADRCRQAKPDNAPILYENGAFGKRLP ADGDINDLFKNKRATISLGYIGLYEVGTVFYGSCWEHNAEAHQFTINIVKKLHDACMKWE AEDPNHYHYSVYSTPSESLTDRFCRLDTAKFGIVKDITDKEYYTNSFHYDVRKHPTPFEK IDFEAPYPHYAAGGFIHYCEYPNLRQNPKALEAVWDYAYDKVGYLGTNTPIDRCFKCNFA GEFEATAKGFQCPKCGNHDPESCDCVKRTCGYLGNPLKRPMVHGRHEEIVHRKKHMSYRM EEKLANDNK >gi|311091660|gb|AEKJ01000018.1| GENE 63 51345 - 51662 295 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315654058|ref|ZP_07906974.1| ## NR: gi|315654058|ref|ZP_07906974.1| conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 105 1 105 105 139 99.0 8e-32 MLSPIMQGCLLCVYFIVIAYSKEIYRLLRKTSGGSVPLKSKILLFIGDLFSAIVVLIAVI HPISKMDNISSIMSTFSLALVPVIFIVALIILIAIYLFTKRANRI >gi|311091660|gb|AEKJ01000018.1| GENE 64 51687 - 52325 923 212 aa, chain - ## HITS:1 COG:no KEGG:llmg_0756 NR:ns ## KEGG: llmg_0756 # Name: not_defined # Def: putative secreted protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 21 207 24 200 205 75 27.0 1e-12 MLNRKSAIGIATLGLFLSIGIVKTDIIANAATTGSVSSDVQGDNFMPRQYRDLDQLVVVH ENRYEISDLGKFVLPKQTYIKLSEQLDSVNKDVYRKHAVIDPTTKSFVLNYQDRASNTPS TKNFWWGTRYYFRSNAQVDTMVSQLHTWANYNSMAAIAGGLLSPYIGAVCGLNTIRLNQV AVDLEAYNNKHKKQHIYMDLNTWIGTWSFGTF >gi|311091660|gb|AEKJ01000018.1| GENE 65 52608 - 53873 1400 421 aa, chain - ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 4 412 6 407 408 413 51.0 1e-115 MQKKFTPILLGSDINVYGMARSFHEAYGIKVKTLAAGHLAATRYSKIVDVEVHPGFEDDP TFINVMRSKMIEYQDHSEPVILIACGDGYVELLAKHKDELSATFVIPYVDYDLLEKLISK ENFYKIADKYGLPYPKTQIIKITDYQTDDYLKCMSFGFPVALKPEDPVSWLDCRFEGRKK AFTIHDAAELKDIVTKIYTHGYKEDLILQDFIPGDDSKMRVLNAYVDKNHKVKMMCLGHP LLEDPTPQSIGNYVAILPEYNLNLYNTVKTFLEKINYVGMANFDIKYDERDHEYKFFEIN VRQGRSSFYVTLNGCNLAKCYIDDYVEDSLKDQDPVYANQDPKKHVLWLGVPTKVFKQYA FENEYKEIAEDLLKKKRVGTTVFYKDDCSFKRWLLMKYMFYKYIGRYKAYYQVNKGSFFK K >gi|311091660|gb|AEKJ01000018.1| GENE 66 53891 - 55840 1872 649 aa, chain - ## HITS:1 COG:L0095 KEGG:ns NR:ns ## COG: L0095 COG0367 # Protein_GI_number: 15674210 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 624 1 615 625 658 50.0 0 MCGICAFYDPQLENKDQVIEQMMDTIVHRGPSSAGKFTNDKVALGFRRLSIIDLRGGSQP IFNEDKSRAVIFNGEIYNFKPLREELINSGHTFTTKTDTEVLLHGYEEWGMDGLLKRIRG MFAFLIWDDNNQTLYGARDFFGIKPMYYTNNDGRLLVGSELKSFLAFPYFKKELNIEAVK PYLMNQYNDLNETFFKGVYKFPAGHWFAYKNGKFDIHKYWDAEYVQNSLSFEQTLNKINE DLKETVELYHNADVKVGSFLSEGVDSSFVTSLLNPDDVFSISFDDATYDEASKAKALADI KGWTFYSDKVKAEEAMHDFPEMQYHMDEPDANPSIIPLWYLCKLARKHVTVALSGEGADE LFAGYVNYGMHTHNNIIKVFTSGLKKIPKNLRFKLAKGIKKMPNFPGKVHIYTNLASPDE YYVGQSVIYDINYPTIFSAKDANDILQPKYQNKLTVNSNYQADFAKVKNLDSVKQMQYID LHHFMLNDIEQKADKISMAHSLELRVPYLDKKIAELANSIPTKYLVNKYDTKYALRKAAE RVLPEEWAQRPKLGFPTPIKQWLQDPKFYKQVRLLFAEDFVNNIFNQDKILAMLDKNFSG DGSDRRKIWTIYTFLVWYKLFFVDYENTVKKYNHVQPEVASLLASGKLV >gi|311091660|gb|AEKJ01000018.1| GENE 67 55906 - 57297 1250 463 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0134 NR:ns ## KEGG: LGAS_0134 # Name: not_defined # Def: 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase # Organism: L.gasseri # Pathway: not_defined # 27 463 31 469 469 565 64.0 1e-159 MNMFRNISKALENIVKKNRAEENNITNNSIFDVMQHYTQVGEYSVGAPEGTPGDKDFDLI VYKNDNGILYQALRPKKAENLAPLFVRKFEPRLNRFRAFQNKKNGRRFIVEEHLDEFINY VKNYTRTNTNSINIGIITDTHQKDVDSLTSYGRLGLLHLKEFNYLEERGFLKLKVHLGDW IDGSDPGLVDEQELINLRNCFSSKRIDYALIKGNHDENDKFDALHEMLPSFPEREFEDIM WTNMYRQHNIHYISRQHGVAYFDYGDLRIIMINTSDVPYILDDNGKKKYNTQHTLALRED QVQEIIEILEKSVNKQIIFMGHAVPIDRKGMNSLKYNGRSLHELMVAFNQREKGYLNSHD VPLEYTLTNKFDFSNVVKGKIIAYFAGHAHAEDQYRINSIQYITFNCSALVSLSDSNKYN QRYNRQVDQRTEYAGYVVNVDLDKKLLQVFGYGAASKRRVYRI >gi|311091660|gb|AEKJ01000018.1| GENE 68 57350 - 57832 654 160 aa, chain - ## HITS:1 COG:no KEGG:LJ0133 NR:ns ## KEGG: LJ0133 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 160 1 160 160 172 60.0 5e-42 MEQLTMVSLADKLSAQHDIIISDKQTINVADIFEQIDNLHILQKSAKEYIDMTQEQYYDQ ESDGKLTILQMDKPLKLLKDRILTNHVDGYVDQHEINLTYNHESPYVDGGYNRSVDLNVL IYSLKVIGAVEQIAADDLRKILSKDAVVSLIIAAHSLASN >gi|311091660|gb|AEKJ01000018.1| GENE 69 57918 - 58394 607 158 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 155 1 151 152 99 39.0 2e-21 MIKGYNNILVPVDGSESAELAFDKAVAIAMENAAHIDILNIIDTRQFMGELQDTLISGDT VYQMTNDSEEYLKSLQKKAEEQFKFKDVSYHIRYGSPKRIIAFDFIKDHNNDLVVMGATG MNAVERMLMGSVTEYVNRNALADVLIVKTDLNNEKIKK >gi|311091660|gb|AEKJ01000018.1| GENE 70 58543 - 58821 196 92 aa, chain + ## HITS:1 COG:no KEGG:FI9785_195 NR:ns ## KEGG: FI9785_195 # Name: not_defined # Def: putative serine/tyrosine protein phosphatase (EC:3.1.3.48) # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 3 70 4 71 267 91 63.0 8e-18 MNNYHKRLLNIKSGRNFRELGGYRTLTGKKIKYHKLLRTGNLADLLPEDTNLLENYNVKL IIDFRSEKEKINTLILFLTKQNMNLILFLARI >gi|311091660|gb|AEKJ01000018.1| GENE 71 58939 - 59343 301 134 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 6 132 173 297 298 77 34.0 6e-15 MHTDIFLELLLANNNDNQAALFHCTAGKDRTGFGALLILSALGIPFDTIKKDYLLTNTTT KDFINSMLKKAKDDGGNDNVVKATYDIQSVCAEYLDYVLNNINNNYGSIHNYLRNTMKLS RKDILDLRKIYLED >gi|311091660|gb|AEKJ01000018.1| GENE 72 59531 - 60451 1034 306 aa, chain + ## HITS:1 COG:alr0190 KEGG:ns NR:ns ## COG: alr0190 COG4586 # Protein_GI_number: 17227686 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Nostoc sp. PCC 7120 # 5 242 3 240 322 226 43.0 4e-59 MIVIKNLSFDYVTFEKASGLKGTIEDLFHRKPQHVKALKNINLNIEDGSLIGLIGPNGAG KTTLTKLLTGIISPSSGSVNIDTFIPMQRKTELLKEIGVLFGQKSQLSWDLPAIDTLNML ASIYSLEENRFKKRLKELTKMLNAEDLINKPVRKLSLGQRVKCDLICSLIHEPKYLFLDE PTLGLDLMTQESIYEFLREENKRNKTTIIITSHNIRDIEALAQRLVILANGEIVFDDKLE KLPINISTDDHFVVKYLVNNEPESKNISENDLKNFMQTLSANQIISLTREGINLEEIILE IYKKVK >gi|311091660|gb|AEKJ01000018.1| GENE 73 60457 - 61200 506 247 aa, chain + ## HITS:1 COG:no KEGG:Ldb0155 NR:ns ## KEGG: Ldb0155 # Name: not_defined # Def: ABC transporter, permease protein # Organism: L.delbrueckii # Pathway: not_defined # 1 246 1 247 248 171 48.0 3e-41 MKKYLPIFYLGIKSSLVYRGNYLIKIITQVLNLIVTLWMWCWLMGNNVHNFNYLAKYLIM TNTLSLLFSIAPTFTLADLIQSGKLSNYLTKPVSLYWYLYLTYIGSQLPLIIFYLVLGLY FNLNIGFINLILYLIFCSFMFFNLALVFGSLGFWLINMWPLKSGLFAIYLLFGGLYFPLS MLGKNIYSWLQYNPFSLVTDVPAKLIASNINQTNIYYLAVAVWLIIFYCIYKKTFKLGLK KYEGVGV >gi|311091660|gb|AEKJ01000018.1| GENE 74 61197 - 61970 503 257 aa, chain + ## HITS:1 COG:alr3052 KEGG:ns NR:ns ## COG: alr3052 COG3694 # Protein_GI_number: 17230544 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Nostoc sp. PCC 7120 # 2 257 11 267 268 60 22.0 3e-09 MRIQKIISSIWKQSIEEFLIYRATSLITFILAVVFLLIELFVGDIYFSNSENVNWTRNQY FILITFMNSATYIYNFFFVIGHENLVEDILEGELDYNLIRPVYSYWYSIGTHLDIPSIFN LILSLGLLGYYLALENVGIIGYAIMLINLILTAFLIFLLNQLAVTLSFWVDGLTSLFGMI EDLISYASRPKQIFPMIIQQIFTFVIPVLLASNLPVEMIFHKHNYWLLGYFIMIDILLYY TSKLLWNKGIKHYSSAN >gi|311091660|gb|AEKJ01000018.1| GENE 75 62072 - 62935 741 287 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_10090 NR:ns ## KEGG: LAC30SC_10090 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 282 1 282 286 258 50.0 1e-67 MTIGELLKEYRISQAKNQKDFTHNGIIISQSYYSKVEKNTHRITADSLIKLLHFNNIPLW TFFSRLNPNDDMQYQQISNLHSIMISTYYGQNQQKLNDIKLLIDKTNLSKEDKNEEKLLV DGWIESLKKDPKSFDMELRHKLKDKIFSHPNLDKNTITLYCNFMVFYDLDSNKIIAKKII QQYKDSDNVDIKIAILAIISNILAIAIEKNQIEDIQLFIDTADEIPTLPELFFYKNTIFF FKNLIIYKQTKQNNSLINCKNAINTIINLDMKSYGDKIHKFLNKHTK >gi|311091660|gb|AEKJ01000018.1| GENE 76 63288 - 63947 442 219 aa, chain + ## HITS:1 COG:no KEGG:LBA1932 NR:ns ## KEGG: LBA1932 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 16 216 8 212 215 102 37.0 1e-20 MSMSKKVILPSVILSLLGSIVACQNASFSASTSLQKSTADLSAQVVQQVKISNSNDNIYV KVGKKLKVDYDGPKNNAPIVKIKNHYLEVSSPHHFSLNFFSRNTYNVTITLPQNELKNFS INSSNGNVKVEEIHTDKGNIVTSNGNIIISKIISRFGFELSSSNGNITVEHANFSGYNLS NSNGSNKFRGMHVSNSFAKITSKSNVLDINNSNGDIDIY >gi|311091660|gb|AEKJ01000018.1| GENE 77 64056 - 65633 1052 525 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 3 514 4 518 535 130 24.0 8e-30 MALKYVEKRYIFIFVILSFFKSLQAAFIAVVSQQMVNWVNKPKLSYLFTIVVVALVGLIV FWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIETDKIEA ELQIITNVIQFITAIIASIAGSLPLTIVFMLASFLPGIFQRILGRNIEEKSKEWDKSNSK YTENVKETEMFSASARLYNTENNLWKRFKSSANTMEVALLKLNFWQGFTNETINTIAYSV ITIAPIALGVYLVSIKNITLGTLIMVSQLSNNFVNPVIIISAYLNDMRVAKHMWEKIQDL SQKSNCLQNSKLGIDYFNGIELKDVAVAYKDKDVFSNVSFDIKKGEKVLIVAPSGWGKST LLNTLLGNINIKNGRYLINGEDMTTDIKKVHNYFSYINQEPRLLDDTILYNITLGCKDDQ NILNDVISKAGLEDLIKEKGWDFKVGQSGSHLSGGQKQRIEIARALFFNRPVILADEATA SLDPVLAKQIHETLLKEYHGTIIEVAHHLTTEEKSMFNKVIQFGN >gi|311091660|gb|AEKJ01000018.1| GENE 78 65943 - 66341 555 132 aa, chain - ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 128 1 125 134 116 48.0 9e-27 MAKELILISHGKLAEEAKKGIELIMGPQDNIQAVCMLPEDGVSDFQKKFEDATADFSVDD IVVFADLMGGTPANTVSRLIKAGLNIKLYAGLNMAMIMEWLNCQMVDDRVPDYVKAGKDG VVDVNAFLNTDN >gi|311091660|gb|AEKJ01000018.1| GENE 79 66434 - 67594 1092 386 aa, chain - ## HITS:1 COG:SP2056 KEGG:ns NR:ns ## COG: SP2056 COG1820 # Protein_GI_number: 15901876 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pneumoniae TIGR4 # 1 384 1 382 383 375 49.0 1e-104 MSYFLHAKKFFLKNHVTNGGYLEIQDDGNFGFYYPEAKKPTNVVIKEYADKLVAPGYVDT HIHGLLNEDVMKSNWNGINKISEGLLQAGVTSWLPTTITAASSTLTHICQMIAEHKGEET GAKIQGIHFEGPFFTPEHGGAENPKYMTDPSMTEFDKWRAASKNMLIKISLAPERRGAKE FTRQAIKEGVVVSLGHSSANYEETMSCVDAGATMFTHTFNGMNTLSQHTPNIIGAAFSSN LTIAELICDGHHVEPAAIKALISAKGYEHIALVTDCMQAGLMPDGDYMLGELPVYVKDGM ARLIGKNNLAGSVLLMKDAVKNLVDWNIATPEQAVMMASYIPAKSINKLKYCGVIEPDHP ADFIILNSDLTLVETYVNGISRYKNE >gi|311091660|gb|AEKJ01000018.1| GENE 80 67682 - 70636 2755 984 aa, chain + ## HITS:1 COG:alr4773 KEGG:ns NR:ns ## COG: alr4773 COG1501 # Protein_GI_number: 17232265 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Nostoc sp. PCC 7120 # 364 646 465 748 779 120 28.0 1e-26 MTSVLKDNQKQNYLSDLCQVIKKKDYYELIFKNNEIGKLYIINDEIFRLIIQPKGIEELP SVPFSCTKIKQNQKDYFELSKLLITEETFIIRNQRYSLRIQKKPALISIFDERTNHYRMK QKQPLLFQDNCTTETLTQNDNEFYFGCGMQNGHFSHKGNTVQIKNTNLTGLGAVACPINL FWSTAGFSELRNTWSNGIYDFGQQSPTYSSIMHFCDIFDNFYILGDNPAKLLANYYQISG QPLFLPKFALNLGYISDLSSKKVDNTSDIAINKQNWLTAIEDKIKLFAKKEFPLSWIIPD FKSKATFDINSTKNLSDYNINFGSENLRDNGTFGIIQLPMNNTDNFAIIDNLRNMHNQLD HQNQRIWLMTNNGWAGIHTYSATVNGGVGGEWEELSAQITSFLGLSLSGQPNFGNALDGE YGGGNAQVNLRDLQWKIFTPLLFNMDGEGNIEKTPFAFNNKITKINKAYFNLRRRLTYYI YNLLKQAQDGFPMIRPLCFNFPRETYNYTTRVNKEFMLGDSLLIAPITNGRENHEGLSIK DNIYLPNDRTVWIDPFTGKKFPGGFSYDQLTFSSWHLPVFIKQGSIIPNSLRDANIFPCN QETAILYDDDGISRQYQNEQFATTKIDSSLQNKTLVISIAATQGDFDKLDLQQPTYLTIF TDNHPQNIIATKNNEVINLVETNDIDTLDDQTSGFSYIANFNLWPEFSEYTKSNHNIIRI KLVSQNIKQDHFKLTINNFTYCNDVQMHAITDSALIIPKDFEIVPKSVTSKSMTVRWSNV PTPINDHLTADIELNGIIHTNISGNIFTLHELQSNTKYHLRIRNRYLNKVSEWSENITGK TNPDPLEYAVKDIKISANLKSTLEMPLESLIDFCPASEWLSKEKITTNNPLILTINFDQI YKLSRMVYIPRSRDHKGHVLKIRIAISKDGLNYSEWSEPYDWNDDAKNKVIGLRDVVAKS IKLQITDAVDGVVSGKELLFFKAK >gi|311091660|gb|AEKJ01000018.1| GENE 81 70718 - 71467 843 249 aa, chain - ## HITS:1 COG:L17781 KEGG:ns NR:ns ## COG: L17781 COG5438 # Protein_GI_number: 15672790 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 22 249 21 248 253 117 32.0 2e-26 MNNIFILLLLLLLGLMILVGGKTGLKSYLSIIINACLIILVALLISWGINIIGVAFVFIP LKLATIIYLGTHDYSVAKNSFLTALAVSFIVIALIVAFEYLAQAAGFGDQSGEELVGLSL QVGISFPQISIVVAIFSALGAIAEASVAMSAGILELNRHDPEITAQQIFKSAGQMGSDIL GTSINTILFGCFGSFLPLFIWFMRLNYSLVEILNDKLFVSEALTVVYSFAGVLLTVPLTT IFLVKGLKK >gi|311091660|gb|AEKJ01000018.1| GENE 82 71479 - 72564 806 361 aa, chain - ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 3 357 2 362 370 173 33.0 5e-43 MSKKRRLIISLIILLLGLFLSLWTYFSPKGSIHPVGYITDTTIHDELVNKVEDSYQNKDE VRCQVIHVKVLSGKHKGEKHTISNYYSPSQVLSQKYHGKQMVLMSFVKNKPTIISPKRDG VIIFACFFVVSLLVLITGMSSISILLSMILNSIVFYFVIKFDIIENGTQTFAIYGTAVVL FTALSLIIVQGCSKKMLVTLVSTLLGVFISFGMCYLLMRLTNEKGIKYEAVDYATQDPRA LFLAQTLLGVLGAVMDEATDIVTSLYALCQHKQQITFKELFNSGRTLGQEIMGPLINVLV LIFMAEALPMAILLLRDNNTLAYTCQFALSLGIIQSLVSAIGIVLTVIFSTVCCYVFVPK H >gi|311091660|gb|AEKJ01000018.1| GENE 83 72584 - 73267 791 227 aa, chain - ## HITS:1 COG:no KEGG:lhv_0144 NR:ns ## KEGG: lhv_0144 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 224 1 246 246 121 39.0 3e-26 MIKGKQMQEKMMVTSQVAAELGISVATLRKYSLEIEKVTKNRMYFVRNNNQSRMYTSKNV KLLHKLLTLINQEKIPYKLAIQQLFGGQTAAEMVQAEQHNNYNMVDAKQVVQLLSLLQKT IEQQNEAISSLQKQMQELSQQNSRLLANSQTKVDKEVDPKILAMPDISGVEPVETKKTAE EIHEEILRKARENQQKHPNAMMHRTLADMQLQDDKHWWDFLRKLIKK >gi|311091660|gb|AEKJ01000018.1| GENE 84 73260 - 74345 1510 361 aa, chain - ## HITS:1 COG:STM0380 KEGG:ns NR:ns ## COG: STM0380 COG1181 # Protein_GI_number: 16763760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Salmonella typhimurium LT2 # 4 356 3 360 364 293 42.0 3e-79 MNKKIRVGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVL EDPTYQIENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDD VLAAAITMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKP SNQGSSVGISHVTSAADYEKALAEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQ ITNAQGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSML TTDGHKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVARYNHKKTLLHKH D >gi|311091660|gb|AEKJ01000018.1| GENE 85 74578 - 76017 1193 479 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0106 NR:ns ## KEGG: LGAS_0106 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 472 1 506 508 494 52.0 1e-138 MRLRIKITSFFITASILISTLAGTTANAAGFTKKDLNNIHRIQEQYALLPKMRYNQKNIY HKEPHLSEPFDPGILSAEYISSQLAYINYYRSMFGLNKINTDSTNNDNAQIAASVMAAAQ ASPFVNQHGLPSLVKPPFISDMFWNIAKIVTASSNLNFNINNQTAGEVVTDLLTDRFNLD GSDTGHRAWLLSTKISKTGIGAAYGDNGYRYSVQQVAFAADSYAAPCQTSVLYPASNLFP IELLQGSNIAWSLYLSEKRINHLPKITITDLDDNQSYKVNHVNNFSKQGFGYFSTIITYY PANMPLILGHQYEVNIHGLYKYTFKLFSLDPTKPLPLDTDDSNKNKHRNNAQKIKSALLS KAEKLRDSLNKDRAMNINLFGKSYQDGKQFYNLGAQQWFHDFFVVDVPDLTAGIIDITDK TIDKNIYTSPYKQYRRNTFTQLQAGKSYAYGQIIQINKTNWYYLGPHRWFRQQISRHTL >gi|311091660|gb|AEKJ01000018.1| GENE 86 76698 - 77318 572 206 aa, chain + ## HITS:1 COG:BH3089 KEGG:ns NR:ns ## COG: BH3089 COG1051 # Protein_GI_number: 15615651 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Bacillus halodurans # 8 206 8 207 207 157 42.0 9e-39 MDSKDILIEWAKRLQSLAQAGLTYGKDKFDIERYQEIRDISAEIMAWKSDTPIQKIKCLF CNEVGYQTPKIATRAAIFKNEKILLVQENDGSWSMPGGWCEVNLSLQENCIKEVKEEAGV DIEVEKVIALHDLSKHSDKDYPYGVLEVFFLCKLKGGHFEENYETIDSKYFSIDELPKMN CDKGSEEQAVMCFKALHDPFWKTYFE >gi|311091660|gb|AEKJ01000018.1| GENE 87 78218 - 78532 213 104 aa, chain - ## HITS:1 COG:MJ0866 KEGG:ns NR:ns ## COG: MJ0866 COG0537 # Protein_GI_number: 15669057 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Methanococcus jannaschii # 4 81 30 107 129 63 41.0 8e-11 MSDNPEVEGHMLVFAKKHFPTLELADQSSWYYIGEILNELGKRLRSKGYDGYNLLSANGV SAGQSVKHFHFHVIPRKKNDGINAWPNFKTKPNNTSDFFEKVKF >gi|311091660|gb|AEKJ01000018.1| GENE 88 78591 - 79361 516 256 aa, chain - ## HITS:1 COG:SMc01214 KEGG:ns NR:ns ## COG: SMc01214 COG1063 # Protein_GI_number: 15965330 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Sinorhizobium meliloti # 4 198 77 285 347 72 26.0 6e-13 MDNGKFVVINPNITCGKCYSCLNGYENLCSKEKAIGTNVNSGFQGWLQVPSTNLEYIEKP DLKYIFTDPLAVVLHGMSMIKILSNYKVIVLGNGSIAKILVWRLNLLGIKPDVMCRSGIW NNKELTISNLYKLTEKVSPNYYDIAFECIGFKQSETIKKSLGMIRPKGEFICFGVFPEDY SPTLKVRRLFEKEITILGVRSFTKKDFKYAKSILDLHGSKLISRLCISVVSGENINAIMN DIENRNIDKVIVRMKR >gi|311091660|gb|AEKJ01000018.1| GENE 89 79882 - 80745 749 287 aa, chain - ## HITS:1 COG:SP0141 KEGG:ns NR:ns ## COG: SP0141 COG1396 # Protein_GI_number: 15900079 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 282 5 281 287 213 44.0 4e-55 MSEKSLELGELFKELRLARGLKLKDVARENLSVSQLSKFENGQTMLAADKLLIAIQGIHM TFSEFGYALTQYQESDLFKIGNQLVNFQAKRDVEGLRDLLKNYRPRETYEVYHQLNKLVL KSAIHSLEPSFEITNEEKEFLTSYLFAIEEWTEYELYLFGNTLFILSDEDLIFLGKAFIE RDKLYKDLSEHKKRAELVLINLILVLVEHRDFYYASYFINSLEKMLNYQDMFARIVLNFL KKVMNYIENGKVDLSDIEAYIDLIERLDNPTLVMFLRTNLEQIVNNQ >gi|311091660|gb|AEKJ01000018.1| GENE 90 81059 - 81805 685 248 aa, chain - ## HITS:1 COG:no KEGG:LSL_1382 NR:ns ## KEGG: LSL_1382 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: ABC transporters [PATH:lsl02010] # 5 246 1 241 242 116 30.0 7e-25 MNSRLIKWELKKQQHTYLPIILCCFIIVAVFLGSFLYFMNQQVFGKDQTQWLALWGEIGL FYAQLFFPLLIAIIVNAVWYQELEQNSWHMSSLLPIKGDRLLIAKVITASFYSLLSQIIL IILYYLIACLAHFPISHVNPFTFIWWGLLGWGGSLSIIALQFFVSIMFSRFTSLIFALIL GLGNFVTLLMGTTIFNLYPYSQIAVGMRVRAYENMSFSEFGFFLITNLVWMVIGFFLSKI TMKRKYHF >gi|311091660|gb|AEKJ01000018.1| GENE 91 81798 - 82538 315 246 aa, chain - ## HITS:1 COG:no KEGG:LKI_03870 NR:ns ## KEGG: LKI_03870 # Name: not_defined # Def: putative transporter, trans-membrane domain bacteriocin immunity protein # Organism: L.kimchii # Pathway: not_defined # 1 210 2 214 248 86 30.0 1e-15 MKQLRTEIKKYNRNRLWLPILVLFLFSIYWCSVSNNIQINKNSSNIFQTLVFNLYTINNL IIPFSVALLSYRMVMIDRKNRMFSVLFTNGGNEIGLFLSKYILGILILFIGFACQLIFTI LSSKYYHTSINHNELILFVVAMLLGSGTMLLIQLLLSFVIESPIIPIVIGLAGSFLSMLT SGLLSKQITIFIPWEYLSTLNPYTINDSGIHPFTNYQFYFSLVLIIHLLLLIISIWLVFK ERIIHE >gi|311091660|gb|AEKJ01000018.1| GENE 92 82545 - 83450 279 301 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 6 301 9 307 309 112 28 2e-23 MTKSILSIRNLSKSFGGQKVLDNLNMEIKTGEIYGFLGVNGAGKSTTMKIILGLLPKDRG EIIALGHSLPQNRSQVLPEIGALIEEPSFYPNLTGFENLQLIQELANLPKENIKVAMEAT GIYYAKDKLVRNYSLGMKQRLGISMALIKFPKFLILDEPTNGLDPDGIHQMRQLIRSLPQ KFNMTVLISSHILSEIENLADTVGIIKDGHLIYEGSINCLLNQEKKYRLKVNDLGKAIHI IQHFDSNITITKDNDTLLLSLPDHAFVPDLITQLVHNELQIFEIYGVKKTLESVFLYLTK E >gi|311091660|gb|AEKJ01000018.1| GENE 93 83443 - 84468 895 341 aa, chain - ## HITS:1 COG:alr7297 KEGG:ns NR:ns ## COG: alr7297 COG2274 # Protein_GI_number: 17233313 # Func_class: V Defense mechanisms # Function: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain # Organism: Nostoc sp. PCC 7120 # 13 322 380 698 713 125 28.0 9e-29 MHGQELYNDILSLQSIINMTNQLFSISSAVILIYLGINLVSLHRINMGDLVLFQTIFISL MSSVTQFQTSLIELSNLSVYSKKVQSLFTKDEQRQDKVIPNNDYILKAQDVSFGFYGNRQ VIKDFNLTIRPGEKIAILGESGSGKTSLLNVLLGVYKYQGDIYYGIKDFRKKLGVVTQNM NLTSGPLIKNLIGNSSITPKIMDEVNYAISAVNMMETIDKLPKKIFSNLFQNGKNLSGGQ IQRLLVARSLLNDSKFLVWDEPFSNLDNLNREKIYSNILNSARYSDKTLILSSHHIDCVK YMDRIIFISSRGQISVGSDEELRNNIEYQRFIGINKGENND >gi|311091660|gb|AEKJ01000018.1| GENE 94 84764 - 84961 114 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805802|ref|ZP_07699839.1| ## NR: gi|309805802|ref|ZP_07699839.1| putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 09V1-c] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 03V1-b] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 01V1-a] putative lantibiotic mutacin-2 [Lactobacillus iners SPIN 2503V10-D] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 3008A-a] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 2062A-h1] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 2052A-d] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 09V1-c] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 03V1-b] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 01V1-a] putative lantibiotic mutacin-2 [Lactobacillus iners SPIN 2503V10-D] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 2052A-d] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 2062A-h1] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 3008A-a] # 25 65 1 41 41 77 100.0 3e-13 MIHYVRKLFDQIFYAVYIIRRCLTMEKLNHNAVTSLNEVSDSELDTILGGSRWQYYRKSK LKISY >gi|311091660|gb|AEKJ01000018.1| GENE 95 85104 - 85310 111 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQRTIIFCLATLVYQTNMSFLLHFIVQLRCIKIPLVIFCITLGVQFKIMSISINDIIKMI RETMVKIK >gi|311091660|gb|AEKJ01000018.1| GENE 96 85459 - 86439 866 326 aa, chain + ## HITS:1 COG:no KEGG:CD1869 NR:ns ## KEGG: CD1869 # Name: not_defined # Def: putative conjugative transposon mobilization protein # Organism: C.difficile # Pathway: not_defined # 1 326 118 443 443 483 87.0 1e-135 MVTGKCYQSNKRSYHQIRYQSDKLCKENNLFVIDEFYESYKRKYKTNGKSWYENEQFKKG TSWKSRLQFDIDRLLKQSKDWEEFLKKMAELGYEIKHGKHIAFKPKDKQRFTRAKTIGED YTEERLRERITENQNIKASPVKKRIGNVINMNTNAKVKESKGYEYWATKHNLNTMAESVV FIIEHGIKSVKQLDEYIEKAADERQNLQDKIKVIDIEIQKLSATMDKVHTVKKYRAYYKE YKANPSDKAFFEEYKAHITLYENSLSELKKSYSKLPNSKDILAELDKLQEKKNTLMQEYS SSKSTMDELYQTRKNYGIYMDKEMER >gi|311091660|gb|AEKJ01000018.1| GENE 97 86454 - 86738 294 94 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRVTSMIRSLKTLIMMAFLTDMTMTLRTVIILSQLMMWRTIFIAKKKPIQSVRRFVAKTK QFESIMFLSIIVIFLSILSYAFTLKAVHKFLLKQ >gi|311091660|gb|AEKJ01000018.1| GENE 98 86943 - 87113 114 56 aa, chain - ## HITS:1 COG:no KEGG:CD1862 NR:ns ## KEGG: CD1862 # Name: not_defined # Def: putative conjugative transposon DNA recombination protein # Organism: C.difficile # Pathway: not_defined # 1 56 2801 2856 3011 110 96.0 3e-23 MEEKRNDNPLIEDVKRAIIDFCNREYEENHSYDEFNTLYPDLKHIGIAYTNTPDER >gi|311091660|gb|AEKJ01000018.1| GENE 99 87491 - 87805 226 104 aa, chain - ## HITS:1 COG:MJ0866 KEGG:ns NR:ns ## COG: MJ0866 COG0537 # Protein_GI_number: 15669057 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Methanococcus jannaschii # 4 81 30 107 129 64 41.0 4e-11 MSDNPEVEGHMLVFAKKHFPTLELADQSSWYYIGEILNELGKRLRSQGYDGYNLLSANGV AAGQSVKHFHFHVIPRKKNDGINAWPNFETKPNNTSDFFEKVKF >gi|311091660|gb|AEKJ01000018.1| GENE 100 88017 - 88844 939 275 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0105 NR:ns ## KEGG: LGAS_0105 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 5 273 5 277 279 182 44.0 2e-44 MNEDSRVELIKLSVTQTKHYKRMVECLTFLLVTLLFSTLTFMNPYFMTKQLAKESNYVIV DRQINKKFNNLANVLEVEKKETNSALLNSKQTQPMARELVDYVIGLGWFKTDNSEIAHKI KKQIYKFDSNVSSGAIEVQKKLKKCGNQANDFIIYSFNLNDSMLLANLHTLFLIINVVVI ITCVFVALALLKEYMSILKGRSLIHLTSVAISISSLMIMLIFILLAALPLIFNVESWNIL GLFLEIASGIFLELVFVAAILFVISTVISQVTSKL >gi|311091660|gb|AEKJ01000018.1| GENE 101 88852 - 89517 662 221 aa, chain - ## HITS:1 COG:no KEGG:LJ0105 NR:ns ## KEGG: LJ0105 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 217 1 217 219 208 49.0 2e-52 MARQKNMKRRRAILCSTFALLREKGIKNVSLKMIAERSNISKSLLQSYYPHKNKLITEII IGFKTTILRNLPQASFYSINEFAKVKAFIYLILQIGMTDKGISQILESILKDRNNKTVWD NILDDWLVANKIKDKLGTNEQVQVGLSFVVSGGTNLYFKRKELNLSAEDISNIMVKSFMT TFLNSSDQEINEAITEGHDMIVRFDMNKVFKIINSMFLEEE >gi|311091660|gb|AEKJ01000018.1| GENE 102 89674 - 90663 1278 329 aa, chain - ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 13 321 10 316 317 279 45.0 6e-75 MNKEELHELLHPMKLIGLGGNQTLAKRIAKALNKELLETAVKHFSDGEIQVNITETVRGC DVYVIQSIQDPVNENFMELMIVLDALNRASAHSVTVVVPYMAYSRQDTKNRSREPITAKL LANLLQLTRIDDVVALDLHASQIQGFYNIPVDHLHALPILAQYFLDNGIVDRDSDSVVVV SPDHSGAKLARNFGSYFNAPIAIVDQRGARYDTEVHDMIGDVKDKTVIIVDDLIDTGSRI SSSTKSVLAAGAKKVYVAATHALLSQNAIDVLNQLNLEQIVVTDTIEHKKYPDRIVRLSV DRLLAKGIDYIYNDKSIHQIFDEQNRIHH >gi|311091660|gb|AEKJ01000018.1| GENE 103 90752 - 91408 811 218 aa, chain - ## HITS:1 COG:STM3079 KEGG:ns NR:ns ## COG: STM3079 COG0596 # Protein_GI_number: 16766380 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Salmonella typhimurium LT2 # 3 199 54 290 318 78 23.0 9e-15 MKVKINDIELYYQKFGTGHPIILLHDYFQDGSIFDKLIAPLSLSYTVYVPDLRGYGMSQG ESTHYYQTDAEDMASFIRKVNIKKPYVLGFGSGGNIALALASQYPNMLKKLIVAGTYLND DGIDSVHVVISNLRHFVHRKQIDHPRNVDFNFDLNNLKRITIPTLAVVGEKDWVKVDHVR AYSDLIDNGRLIVMPRQTHDSYLIHSLKCIDLIKDFCK >gi|311091660|gb|AEKJ01000018.1| GENE 104 91438 - 92244 772 268 aa, chain - ## HITS:1 COG:BS_yveR KEGG:ns NR:ns ## COG: BS_yveR COG0463 # Protein_GI_number: 16080483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 2 215 1 211 344 120 31.0 2e-27 MLDLPQLTVIMPVYNVEKYIGRALEALLNQKNRNFKLLIVNDGSKDKTRQIAESYSDKFL YFKLINKANEGVAAARNVALAHVDTPYFTFHDGDDWVDPDYTDFFINSFKRYPHVSLISC GYWIDKEKQKKSRSIDPKRESGHLTKKEAYFKIANVSTSPVKGYTWNKCYRLDVVRKHNI KFMGDIAFMEDEVFNIEYVSLSDGVYFTSKPYYHYWQRPDSLIHVTSGLKYIPDNVRATY RVWHKILKSLRHEKKKIRRKMPNKITNN >gi|311091660|gb|AEKJ01000018.1| GENE 105 92379 - 93344 1064 321 aa, chain + ## HITS:1 COG:SP1027 KEGG:ns NR:ns ## COG: SP1027 COG4086 # Protein_GI_number: 15900898 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Streptococcus pneumoniae TIGR4 # 36 310 43 322 324 123 32.0 6e-28 MKKINLSIIAFISSLLLILAVNTKRVSADDNSIMTLGVSLTPNQKKGTINTLNRANNGEN CKIVTISGKDLVKYLNPTGANFNNNSGVWSSALIQRQGNGNGINVHILPYNGHNNITTIT TNQYKNAAITAGISDANIYVTSAIPIDGSGALAGVYAAYAKNGIHLNQEQINAAQQEINT LSNITQQNKDKKGYSDAQLNNAIAGAKAEMAKKGNNLSDNDIRIILNNQLNINHLNNILT SQQKEQIIHLLIEIKKSGALNSKNFQQQASKLAAQIQSKAKDIFNKLNTQQNRNFIQQII DAIVNFFKSLFKFTIMLDKIK >gi|311091660|gb|AEKJ01000018.1| GENE 106 93664 - 94116 306 150 aa, chain + ## HITS:1 COG:no KEGG:FI9785_p9785L.16 NR:ns ## KEGG: FI9785_p9785L.16 # Name: not_defined # Def: putative single-stranded DNA-binding protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 80 30 109 109 135 80.0 7e-31 MAVPRQDDRKEADYIRCLAFDKLANAIYQHCAKVQQFLCKGRLQVSTSIDEATKQVKYHH TVVVSSINFLHDPNISSPSIYFFKTIIMLITNTTIRLPYTEPKYTRGVISVFITVKYKTR KMAASTANVTLKTTKSLCLLPLKSTVIPIS >gi|311091660|gb|AEKJ01000018.1| GENE 107 93903 - 94313 389 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805781|ref|ZP_07699818.1| ## NR: gi|309805781|ref|ZP_07699818.1| hypothetical protein HMPREF9213_0530 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0898 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0772 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0951 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0599 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF0523_1127 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0583 [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9213_0530 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0898 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9217_0599 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_0951 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0772 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF0523_1127 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0583 [Lactobacillus iners SPIN 1401G] # 1 136 1 136 136 202 100.0 8e-51 MEENSKAVTTNKVREKRRKNNSNLFYIQSFLILVGIVVQSILHGFESGYTLPLVAIFLLT ISISAFQEMGITVDFNGNKHKDLVVLSVTFAVLAAIFLVLYLTVIKTDMTPLVYFGSVYG SLIVVFVISIIIVLKK >gi|311091660|gb|AEKJ01000018.1| GENE 108 94531 - 95142 710 203 aa, chain + ## HITS:1 COG:no KEGG:EUBREC_2744 NR:ns ## KEGG: EUBREC_2744 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 5 203 3 201 201 176 50.0 4e-43 MICTPFTGQTGERGFCMKYDYAFKLNAVELYRSGQWIETPEGISQKDFRKRIVQWSRIAD IYGLDSLRHSTTCKERSAECRYQLVARVLAGESQKSVAISAGIDSGLLSKWVQTYKIKGY EGLNLKKGRKSKKEANVSKKSKPTDLTPSEREELIRLRAETEYLKTENEAIKKLIALRHE KWAAELKAKKQQSSKNSVKKDTH >gi|311091660|gb|AEKJ01000018.1| GENE 109 95073 - 95960 517 295 aa, chain + ## HITS:1 COG:SPy0198 KEGG:ns NR:ns ## COG: SPy0198 COG2801 # Protein_GI_number: 15674400 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 26 291 2 266 268 235 48.0 7e-62 MGCGTQGEKAAIIKELREKGYPLKYLLIAMRMARSTYYLEINKADVVANRNQELLAEITE IFEQHKRRYGVRRVHRELINRGYRMNHKRIQRLMHEAGLFGKRPKEKYHSYKGEVGKVAD NIIDRDFSTTAPLQKWTTDVSQFNFSWGEMLYLSMLDMNTNEIISYDLSTSPNLEQVSRL LDRAFEKFPSVEGLIFHSDQGWQYRHAYFRNTLKERGIIQSMSRKGNCYDNCIMETFFGR LKNEMYYGYEKDYSSFEAFSKAVEEYIDYYNNKRIQAKTKWMPPVQYRIASMCPA >gi|311091660|gb|AEKJ01000018.1| GENE 110 96609 - 96776 129 55 aa, chain + ## HITS:1 COG:L0468 KEGG:ns NR:ns ## COG: L0468 COG2801 # Protein_GI_number: 15672354 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 22 55 203 236 272 57 76.0 9e-09 MGLPNESIHLSFERRKNLPNRSRKGNCHDNAVMENFFGLLKQEIYYAVTYYSYDE >gi|311091660|gb|AEKJ01000018.1| GENE 111 96967 - 97617 951 216 aa, chain - ## HITS:1 COG:TM1296 KEGG:ns NR:ns ## COG: TM1296 COG3341 # Protein_GI_number: 15644051 # Func_class: R General function prediction only # Function: Predicted double-stranded RNA/RNA-DNA hybrid binding protein # Organism: Thermotoga maritima # 2 67 6 72 223 61 47.0 9e-10 MKFYAVRKGRKVGIFNTWQETKENVVNFSGAEYKSFNSMEAAQAYLNADKPVVDDYSDCD IIVYTDGGCRNNGVHKGGHVKKDDKAAWAYTIRCKDEACSIDGVGGERGATNNQMELTGL IEAIEMLIKKNWQNKKIRFCLDSKYVIENIDRLSTWKAAGWRNTSGLVANKDKWQKLEPL LQECTNKSFFWVKGHADSEGNNYVDRKLNEYMDDEM >gi|311091660|gb|AEKJ01000018.1| GENE 112 97698 - 99143 1147 481 aa, chain + ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 3 481 13 487 487 423 43.0 1e-118 MVNIITLILIVNMIISFYIVFRHQRSVATSWAWLIILLIFPVAGFIIYGFIGRGISKENL FAINKQKHISLDKVNKMQAYSLEKIFSNDTSHKAIQLIKYFNNQKEAPLSKNNAIEIYTD NQSNFQKIFNDMQNAHHTINVEYYSFMNDQLGNKFLNLLIDKAKNGIKVRIIFDPWGSLG TKLSWFKPLIKVGGEVIPFITSQNNIKKYRINYHMHRKIVVIDGKIAWTGGYNIGDQYIG HNKKFGYWRDTNIRLVGPAALLLQERFVMDWNASNDYKHTIKFSDLLFPKCNNDPYNTNH STVQVVNDGPDKEVPYLRNGMIKLMMMAKESIWIQTPYLIPDDPMIATWVTAATSGVDVR IMIPCMPDHIGIYRATEWYANYLMNMGIKIYIYEKGFLHAKTVTIDNDFSTVGSMNQDYR SYLLNFEDEIIIYDNTITKQLKDIFKHDMCECYQLTPTITERWSKWLKFKQAFARMFSPF L >gi|311091660|gb|AEKJ01000018.1| GENE 113 99527 - 101134 1751 535 aa, chain + ## HITS:1 COG:SPy0277_2 KEGG:ns NR:ns ## COG: SPy0277_2 COG0765 # Protein_GI_number: 15674455 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 297 526 7 235 239 265 57.0 2e-70 MKSKINTFMIMILFLCSIITVSFSHTSIVNAKIKEPLKIGMEANYPPYNWTQNTDAHGAV PIDGSKQFANGYDVQIAKIIGKKLHRRVIVEKTVWDGLLPSLTSGKIDLIIAGMSPTSER RKAIDFSIPYRKSTFVLIVNNASNFATATKLTEFKGAKLTAQQGTLHYDLIKQLVGAKRL TAMRDFSVMRQSLASGTIDGYVAEDIEYQSYHRVNPNIVSINLSKMPHFHVNYNDSITSI GVKKGNTKLLNQVNQILKTISDNKREKLMSFAIKQQPQVSTTKKTNWFVSIMHRYGKMIL NGVIMTVFLSLIGTIIGFFIGLLVGIIRTIPTPLSKVKYWLLKLINWLLAVYVEIFRGTP MMVQAAVIYYGIAQLWHINLDRTLAALFIISINTGAYLAEVIRGGIISTPKGQFEAASAL GMSHSQKMWHIILPQAVRNCLPSITNEFIVNIKDTSVLSIISVSELFFVGTTVASQTFQF FQTYFIISIVYLILTFSITRIFRLIENKLEGPKNYNLMANQLQVDEPKEGENEND >gi|311091660|gb|AEKJ01000018.1| GENE 114 101127 - 101882 271 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 1 221 1 218 309 108 31 1e-22 MTNSNKKILQIQHLQKKFGNNFVLKDISFDVTQGEILTIIGPSGGGKSTMLRCLNLLEEP YKGIINFHDENILDPSFDRNLYRSKVGMVFQQFNLFNNKNVLQNCMVGQELVLGRSKEEA KRIAIENLKKVGMEPYIEAKPKQLSGGQQQRVAIARAISMNPEILLFDEPTSALDPEMVG EVLNTMNDLAKTGLTMIIVTHEMAFARNISDHVIFMSDGIITEQGQPNEIFNHPQEEKTK KFLRNFKNENL >gi|311091660|gb|AEKJ01000018.1| GENE 115 101942 - 103645 199 567 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 348 557 16 231 245 81 28 3e-14 MQTTKDYVKLFFKQNKFVAFVSALVFIILSTTYSIVSWIMQVIFDYMAGNSTYSFESILL MLGGYLFVAASLFMVQRSVYPRFLEKAMNQYKEAVIKKLFKKSYSDFLITNSGTYLSVLT NDCERILETYLKNIFEFIQNIIMVVSSLTLMLYYNSLLTIIAIVIAMIPMVCSLLTARSI ATREEQVSKTNESYVSLTKDILNGISVIKSFKVENEAISRYQNKSMQLEHTKKMREQTFT VVSACGTIAYMLTQFGVMVIGAWMIHEHIGTMTAGMILAFINLMNGILQPINALPRIYGG MSGAKKLITKMSDYMSNAKEDTGETIKQPLANIALQDVSYAYDTDHTILKHINLQLQAGK SYAVVGPSGAGKSSLINLLMGYYQNYDGSVHFNNYELKQISKYSLYEKITLMQQSVFIFD ASIWDNITLFKQFPDAEVDRVIHLAGLDHLISQKGRDYQCGENGSHLSGGEKQRIAIARS LLKKSEILLVDEATSALDNETSANVTQSILDLQGILRLVVTHRLDASSLKQYDEILVMKD GALIERGNFDTLMDSKEYFYSLYTISK >gi|311091660|gb|AEKJ01000018.1| GENE 116 103821 - 104669 592 282 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0084 NR:ns ## KEGG: LGAS_0084 # Name: not_defined # Def: restriction endonuclease # Organism: L.gasseri # Pathway: not_defined # 2 267 26 294 309 275 54.0 2e-72 MKLFSVCDICQLRGVDPLKYENKVVQKLSEICMFNFCGKVTKAIVATKYTTFVIPKYKRA YEAFIQDYDCNDVAIDQINRNTFYQFVIKSEKGELPSPELTNTFEENLLQLGIKADFSFN KIDYIDREYIRNKYKYRCQYCGRRGTSVDHKDPVCFSHDNGLDNLILSCSECNKIKGNMS YQSFCKMNAKIKNINKKLVKYETYLNCLHELFDENKRYIDGQVHLRGVIRDTEIDAMRKQ NKSLHDAIDSLQSDYDKLRLIRKNYFEVNDNITNAEKTDKLF >gi|311091660|gb|AEKJ01000018.1| GENE 117 104742 - 105389 682 215 aa, chain - ## HITS:1 COG:lin2634 KEGG:ns NR:ns ## COG: lin2634 COG1896 # Protein_GI_number: 16801696 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Listeria innocua # 1 191 1 190 215 228 58.0 7e-60 MGLHAYIQGFSSLESIDRAPGYFKYQHHSVAAHCFRTAELAQIMGDIEEVIGGQKINWKA LYEKSLNHDYTERFIGDIKTPVKYATPELRKMIGEVEETMTAKFIKDEIPAEFQDIYKKR LSEAKDDTLEGQILSICDKLDLLYEAYGEIELGNPSLVYMQMFKESLATIKTYDNLACVK YFIQKILPDLFKGDFAGKDKMERIAFSILLMGDEQ >gi|311091660|gb|AEKJ01000018.1| GENE 118 105503 - 105637 208 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRNIHTGINPHRRPRNKDNSKERVAHAAKVVAFLNKAKADENK >gi|311091660|gb|AEKJ01000018.1| GENE 119 105694 - 106065 277 123 aa, chain - ## HITS:1 COG:no KEGG:FI9785_136 NR:ns ## KEGG: FI9785_136 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 116 1 116 136 115 56.0 6e-25 MLIKKIISLNIKTAAADLLQNKIFDKSVIILALNDGSNKYSTVGGTCTIGANFQLVILSK YDSQYDIKIDNNMNIPMYTSQDELQYLTKGLTLGAKAGVLFLSSDEGIIDSAVSINNKTC HTN >gi|311091660|gb|AEKJ01000018.1| GENE 120 106273 - 107379 788 368 aa, chain + ## HITS:1 COG:L20481 KEGG:ns NR:ns ## COG: L20481 COG0471 # Protein_GI_number: 15673760 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Lactococcus lactis # 35 367 49 391 392 125 29.0 1e-28 MTVIRNIFKDRILQITVIITILSLCFARPRLGDINTHTLFSILAMLTIIQIFSYLHVLDV LAYKLTASASNTRRLTVIFTFLSVISAMFLTNDITVLTLIPLYLTIARRYKLPEILPVTL IGMGANIGAAFTPWGNPHNIYIVNRYTVTPIQFFKWSLPLLSVSLILLIIMLMFVKNTPI PSLPKEDIRISIRPMILTIVVSIFFFFGIFNVVPVYVPAILAILLTIFINKTILLHIDYA LLLTFTCFFVFISDIQQIPFIVNEISKAMSNEHLVYLTSILSSQCISNVPSTILIGKFTN YAEALFLGSNIGGFGTLVGSMANMLVFKSFLEHGTISRKKFFCMFSLLQFTGLIVLMILG WLVLYFVI >gi|311091660|gb|AEKJ01000018.1| GENE 121 107395 - 107946 504 183 aa, chain + ## HITS:1 COG:lin0961 KEGG:ns NR:ns ## COG: lin0961 COG1704 # Protein_GI_number: 16800030 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 6 183 8 185 185 196 54.0 2e-50 MILAIIIILIILIVLYIAIYNGLQRAKVNIEESWSQIDVQLKRRNDLIPNLVETVKGYAK HESETLEKVIQLRNQLVQIPTGNHQEQMQVSNQLTDSLKSIFALSESYPNLKANENFAQL QEELVNTENKLAYSRQLYNSTVSFFNKKILVFPSNIVASIHGFTKQEFLATPSEERNVPK VKF >gi|311091660|gb|AEKJ01000018.1| GENE 122 107949 - 108842 657 297 aa, chain + ## HITS:1 COG:SPy0331 KEGG:ns NR:ns ## COG: SPy0331 COG0501 # Protein_GI_number: 15674492 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Streptococcus pyogenes M1 GAS # 1 297 1 298 298 261 47.0 1e-69 MLYQQITKNKRKTVILLAIFVIILAIIGAVSGKIFYNSPIEGIMWSIFASVVYLLIGLAN PASMIMRMNHAIEIKEQDDPELWHVVEDMAMVAQVPMPRVFIIEDDSPNAFATGKNPQNS CIAVTMGLRKMLTREELEGVIGHEISHIKNYDILVSTVAIVLVAVISFIGNLTCNVFLYF GNIFSDKDDDRNANWGWLIYLFMRIFSSLLVFSATLVQFALSRNREYLADAGSVELTRNP KGLISALTKISTSAPMTVADKSSASLYFENPFHKHGLTHLFDTHPTTKKRIERLEKM >gi|311091660|gb|AEKJ01000018.1| GENE 123 109047 - 109595 432 182 aa, chain + ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 170 1 176 186 113 39.0 2e-25 MTSKLHIRDIIFIALIAVMFGGIYILSNQLYNALVFLGPLANDICMGLWCMAGPLAGFVV KLPGTSFLGELLSAAAEGLFGGQWGISTLISGIVQGIGSELGFAAFIYRKYNIFTLIVSA TINTFITFGWDFMKNGYNKLPLNTNLLCLGVRWISMIVFCTIIVNSIVKLLDKAHVLTKY NH >gi|311091660|gb|AEKJ01000018.1| GENE 124 109570 - 110943 173 457 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 261 442 28 208 309 71 29 3e-11 MYSQNIIINNLSFNYDVNTILKNINLTIPRGGFSLIIGPNGCGKSTLLRLIAGLYPQYGG QILKGNIINPFKNWGMIFQEPDKQFTMATPRQEFIFTLENIHCPQEKAYTQINNAVKLTK IEELLDRPFIKLSGGEKQKVALAIIMAMDPPLILLDEPFACCDMTTRHLLIKQLALLKQA GKTILITDHNLAGYQNICDDIFGFINEKFINYDNEQKRALFAQVKPTLNKHFEMVTSSSN ADFSLKKFTLKNPAKFLINQVTIDIPKGKGILLTGENGSGKTSLFKAMTKLIDYEGNLFF EHKEIKKWSFRKYLSKVNQAFQNADDQFLMITVQEELELSQFKCANSLFDEQSLQHYLSI LKLNDHLQQTVYSLSGGQKKRLQLLLMIIANPQVLLLDEPFTGLDCESITIFINLLKEYF IDKNKTVIIISHNLDQMDQLCQYHLQLQNQDLKFITN >gi|311091660|gb|AEKJ01000018.1| GENE 125 110957 - 111613 361 218 aa, chain + ## HITS:1 COG:BS_ykoC KEGG:ns NR:ns ## COG: BS_ykoC COG0619 # Protein_GI_number: 16078386 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Bacillus subtilis # 73 209 99 242 254 59 30.0 4e-09 MNPSLKLLLLCLLTIEITIIPNLIANLCLIVGSLILLMINHINYKKLCYFTIVPLSACIS VFFTIYFYSPGHNLTYALTLISRIYAFALSGAYFATSTDNYTLAKSLEQNAHLPSKFAYG SLAAFNLLPKIYEEVKRIRIAGQMRGLFLSFWSPKLYFKAIISAMTWADSLSQGMASHGY REEKSRSVIITILVTKKDWLLFFSILLLFQPILFIFHI >gi|311091660|gb|AEKJ01000018.1| GENE 126 111616 - 112095 524 159 aa, chain - ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 1 159 159 194 64.0 8e-50 MNIKIVCVGKLKEKYFKDGIAEYLKRMDRYAKVEIVQVPDEKAPEKLSDAEMEKVKEIEG NRILSKIKDKEYVFVTAIKGCEYTSENFAQKISDVTTYGHSDITFVIGGSLGTSNAVNKR ADELISFGKFTMPHQLMRLVLIEQIYRAFMINIGSPYHK >gi|311091660|gb|AEKJ01000018.1| GENE 127 112647 - 113819 1326 390 aa, chain - ## HITS:1 COG:SP2239 KEGG:ns NR:ns ## COG: SP2239 COG0265 # Protein_GI_number: 15902042 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Streptococcus pneumoniae TIGR4 # 9 384 13 379 393 261 44.0 2e-69 MKDKNNINQILKTILISFVSGMLGGLLVIYVVGYRPNNTSINKYESPKLVYDQSKHAGLM TGAFNMVKDSVVSVINLQKTRKNNLFTDIFGSKNDKDTLQTYSEGSGVIYYKNLNYAYIA TNNHVVADSDQLQVILSDGRKIAAQKVGTDPETDLAVLKVNSKYINQVAKFASSKNLVPG QPVIAVGSPLGSQYATSVTQGIISAKSRVVNVVNEQGQVTNEATVIQTDAAINPGNSGGP LVNEQGQVIGINSMKLSRSGDGTAIEGMGFAIPSDEVVNILNQLVKNGKIVRPKLGIRVL DVTDLTRKDKKRIHLPNNIQEGVAVFSVDSGSSAAKAGIKAKDVIVQIDNDKIDSVASLH SKLYKHKIGDKITIKVIRAGKYVTVKAILQ >gi|311091660|gb|AEKJ01000018.1| GENE 128 113855 - 114652 631 265 aa, chain - ## HITS:1 COG:lin0319 KEGG:ns NR:ns ## COG: lin0319 COG1235 # Protein_GI_number: 16799396 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Listeria innocua # 1 256 15 267 276 232 46.0 6e-61 MRISILSSGSAGNTTLIESEHHKVLLDAGLSGKKIANLLAQRGVDIKDIDMVFLSHDHTD HSGGLGVLMRRYSQLNAYANEGTWKYLQESNKIGKIPKEQINIFAPETTKIFDDLEVHSF ATSHDAAEPQYYVFCSGGKRFACLTDTGYVSSSVKMQIEAADAYLMEFNYDDMMLRNGPY SWSLKQRILSDVGHLSNEQAVEALGDVVSRETKYIFLAHISQHNNDQSLVKKSALQLFEQ RDADIDSDVQFMTTAPMQPSKFIEL >gi|311091660|gb|AEKJ01000018.1| GENE 129 114677 - 115513 812 278 aa, chain - ## HITS:1 COG:lin0318 KEGG:ns NR:ns ## COG: lin0318 COG4853 # Protein_GI_number: 16799395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 274 1 263 279 74 25.0 2e-13 MDFKRIECIFLLVFVAINIFLFVEIFQAPKLLNGGHTVNVQNNDLKNEIIADNITLPKIS DEQGEGYYLATKEGHSWISKAKEQLSNNCTIVSSKDTDAIIVNLNKPVDLGNNKNKTLSN IKSFVLNTRNVYQGGKYKYIDSTADKSTYIFAQKSKYGLVTENHSQLSIVVKNNHIVSYM QYYVAPLNTLREKQATISSQAAIDALYTYSELPNNSHVLWISFVYSKLITTRGSIIFIPT WLVAIQNSNNKFTIFKRVNAFSGNVMTIDNEEDKGYIK >gi|311091660|gb|AEKJ01000018.1| GENE 130 115503 - 116837 997 444 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0066 NR:ns ## KEGG: LGAS_0066 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 444 33 474 474 452 53.0 1e-125 MKFSDKCQRIVLRISLSVMVLLSIILSGYIWGSDTRFSRMEQDSNQPAIKKNVGQKSLRE IYTPTQVFYYRDKQLYQAYDAKRNLTLEFSKFTKKLEGHKINKIKSNSTFYRQLLHDEKY FQLTFPDQITISLFLPRANKYLDGEFNRIFVSTKDKKYLYLGDDRNNTLYRVYANVSFKN LYKHIQKAASQIPISLEKLKDGFCVSYNKDQQMAIYSYLTYKETDAYFVYKLLDSGNPTQ RNADDYIAYYNGIYQRLVAYKKTHNYEFVDYQQNKIPNTTTKMLTDSLFYARKICLNEPD LRFFDASNNTISYQKFVEEYPVFLPEDNNVRAKVTFTRSCMQINFNSLDLRIPIPTNGAK KELQATDKIIDKLLQAGYKKSYLEKIIIGYKVCHDTNKTSNLIDLIPTYYIKINGRWHSL DAWLNNNYEVHIPASQQGGISNGF >gi|311091660|gb|AEKJ01000018.1| GENE 131 116827 - 118665 1794 612 aa, chain - ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 1 610 1 610 610 468 41.0 1e-131 MKKIRKPFTSINAKIAIIFMLLLLATIEIVGAYFTRQLEQNSIESFETSIQIPNLISNQI ATQLNKNNAKKANKQLNRIVSNYSNDAINDITVVDSKSVIRSVSNVNDQGTIGQRATNSD IKKVLTSGRQISKIINDNGKYMIQISPLNVGNGPNTIVGVIVVKAGMQSVFNNIHRVSFL FLTASLVAATLGAGVALVIARAITKPIEEMKDQALRISNGDYSGHVKVYANDEMGELARA FNILSVRIERSQEVSDSERRRLDNVLMHMTDGVIATDRHGNITIINETALNFLDKTENEV KGEPITQLLGLKEVTIQDLMSTQQELIVTANANTHDELILHADFSLIQRVTGFVSGLICV LHDITEQQKNENEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRK DLSRIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYE KMSEEGDMWDEV >gi|311091660|gb|AEKJ01000018.1| GENE 132 118707 - 119411 814 234 aa, chain - ## HITS:1 COG:BS_yycF KEGG:ns NR:ns ## COG: BS_yycF COG0745 # Protein_GI_number: 16081093 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 234 1 235 235 320 70.0 2e-87 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD GLEVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR EITQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREH LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVKSPTDE >gi|311091660|gb|AEKJ01000018.1| GENE 133 119739 - 121076 319 445 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 12 437 8 420 447 127 26 4e-28 MAKRTSLLIGPDEKVSKFEATILGLQHVLAMDVYVPPIILAGILAMSSADAMGLLQATFL AAGVGTLLQTVIFMKIPVSQGPSFVPLTAAAGIVLANGGLHGKGIATLLGSSLIGSIFLI LLGLTGVFHKIINKFVPPVVGGTIITCVGLSLIPAALKDNIFAAPGNIFQNIELASITAV VLIFCIAMSLRIPKLEKIFKTSSIVVALLVGTSVAATMGRFNWSQVASAPLFSFPQRTIL HWGLDFSLTPIITFIIIYIILTAETTGTWFAMSAVTGCDISKKQWNNGIIGEGASCMCST LLGATPVTGYSTNAGIVSITGVASKHVFISAGIWFIILGFFSKLSAFLATVPAPVIGGVF AIITVTIMLNGLKVIRNVETEESDLYVIGIPIVLTMALLLVPKKVVAVTPQLLQYLLGSP IAVAAIVAVILKLIMPKYRGRLAKK >gi|311091660|gb|AEKJ01000018.1| GENE 134 121100 - 122425 1273 441 aa, chain - ## HITS:1 COG:SPCC1672.03c KEGG:ns NR:ns ## COG: SPCC1672.03c COG0402 # Protein_GI_number: 19075374 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Schizosaccharomyces pombe # 50 437 57 444 527 275 35.0 9e-74 MIEGTICTPETVDKIGCYGNALVCVNQQGLIASVLFPNNSQYGEIKQTAISQGNYHQLAA DEYLLPGYVDLHVHAPQWPQAGLALDLPLADWLDHYTFPLESKCSDLNYSKTIYDSLVKE LLSQGTTTALMFGTIYNDSNIILAKACLEYGLRGFIGQVAMDNADQTPAYYRNQSAKDAI DATELFIKQLQNLSSDADRVVPVITPRFVPSCSDACLQGLGQLANKYHVPVQTHVSESSW EHGYVLDRFKATDTNVLDQFGLLTDRTILMHATHLTDDDMDLLAKREAALAHCPISNAYF GNGVMRVKEILAKQIKLGLGTDISGGYSSSIYHNIRQAVISSRMLEDGVDTTKQATTRGV ANSRINIATAFYMATVGGAEALHLKTGRIKEGYKADLQVVKSHPSVITLSDEQMIERILY QTQQSDIKQVYVDGNLVYCKD >gi|311091660|gb|AEKJ01000018.1| GENE 135 122684 - 122971 310 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259500794|ref|ZP_05743696.1| ## NR: gi|259500794|ref|ZP_05743696.1| hypothetical protein HMPREF0520_0304 [Lactobacillus iners DSM 13335] hypothetical protein LineA_01940 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9210_0553 [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF0520_0304 [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9210_0553 [Lactobacillus iners SPIN 1401G] # 1 95 1 95 95 179 100.0 4e-44 MFGKKNKAEEKIIADICEILKDPNLKSEERDALIRVKNRLEKGEYTQRVLNNFLSQVRPL ALQSKLSPSVDKFYTDIINNAYKGISWAGMMFMKF >gi|311091660|gb|AEKJ01000018.1| GENE 136 123182 - 123394 146 70 aa, chain - ## HITS:1 COG:no KEGG:Ldb0080 NR:ns ## KEGG: Ldb0080 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 70 21 90 94 71 57.0 1e-11 MLLIIIVGITIITVYSAYYSFGTMIFGVHTESAIKDFWSTEFLLGAVYIIVVITIAVVTG VTRLYKKHLK >gi|311091660|gb|AEKJ01000018.1| GENE 137 123420 - 123524 70 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNLKKNLCVTLATVTLGTILSSVWGAECGWNELR >gi|311091660|gb|AEKJ01000018.1| GENE 138 123715 - 124626 1086 303 aa, chain - ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 12 293 16 290 296 146 33.0 5e-35 MRNGTKIITLDNGYHLWTNTQGQGKIHLLALHGGPGGNHEYWEDAAVQLKKQGLDVQVTM YDQLGSLYSDQPDYSDPEIAKKYLTYEYFLDEVEEVRQKLDIDNFYLIGQSWGGLLVQEY AVKYGKHLKGAIISSMVDEIDDYVKAVNRRRQEVLPQTEIDFMHQCETNNDYDNDRYQAD VQILNINFVDRKQPSKLYHLHDLGGTAVYNVFQGDNEFVITGKLKDWHFRDQLKNIKVPT LLTFGENETMPLDTAKIMQKEIPNSRLVTTPNGGHHHMVDNPDVYYKHLADFIREVESGE FNK >gi|311091660|gb|AEKJ01000018.1| GENE 139 124676 - 126028 994 450 aa, chain - ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 431 1 431 449 309 42.0 8e-84 MIQKLNLRQYLVIASMIFALFFGAGNLIFPLHLGQLAGRNWLIATIGFLITGVLLPLFSV LAIAITKTDDVYGIAKPVSSLFATCFMILIHLTLGIMCASPRTASVSYSVGIAPLLPSKW HNIGLVIFTAIYFILTFIIAYNAGNILENLGKILNPIFLVLLFLVIIIALFKPLGNPADF SATASYVHSAGVNGFLEGYNTIDALAGIAFGVSVISAVKSMGITEKNEVAKITAKSGFIA MTMIGIIYFLLILLGAMSLGKFKVSAEGGKAFSQIVTYYGGTLGQIVLASLVTLTCLTTA VGLVSSFAQDFHSHFGGLKYRKWLAITCFASFMTANLGLELIIKWTFAILMFLYPIAMVL IILALFSPLFKGDHVVYKVSVVLTIIPAFMDLIAHLPAPISETSFCKMIIDIRLKYFPLS DIGLSWVFPTLLGIIIATLVHVWRRKNNKI >gi|311091660|gb|AEKJ01000018.1| GENE 140 126120 - 127571 1172 483 aa, chain - ## HITS:1 COG:xasA KEGG:ns NR:ns ## COG: xasA COG0531 # Protein_GI_number: 16129451 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 13 480 6 472 511 285 36.0 1e-76 MDNTAVEDNELSQNIKYNRLTGLKLFAMTSSMVISVSELVPFGKTGPTAIFYLLLAGLIW FIPITKMAGEMASIDGWNKGGIFTWVKETLGEKTGWTALFYQWIHITIGMNVMMYIIIGS VSIILNKPYLNTTPCIRFLLMMIILWSITLVEMVGMKKIGRIAEWCFGLGIAMPVILLIL CFFVYLLEGKNVYFHINFDNVFPHKFDGNSLVVFVPFILAFCGGEASAPHVKYLEKPKQY SKVMLGLACVAICFDLLGSMAIGMTVPKELHTNNVTGFVETFGHMLNSINLPGDLLMKII GALLACGIIGQLGNWLAGPSQGMFEAAKEGYLPAFFTKSTKRDVPMRLIVLQSLIVTLGA IAVTFTSGTNANFAFDVSMAATTVQYLMMYIILLISYIVLKLRHAKLPRTYYMTTSPIKG IIIALVALCITLIAFVLTFIPTRETPEHLRNMYVLIMLIMCAIVTILPLIVYHFRYLYGK KRL >gi|311091660|gb|AEKJ01000018.1| GENE 141 127689 - 128516 863 275 aa, chain - ## HITS:1 COG:SP1845 KEGG:ns NR:ns ## COG: SP1845 COG0708 # Protein_GI_number: 15901674 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pneumoniae TIGR4 # 1 275 1 275 275 375 63.0 1e-104 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANGPTKKHCDIL ADIFEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQVTYPLIGAPDTMDQEGRIITLEFD TFYLTQVYTPNSGNELKRLADREIWDTKYQEYLAKLDQNKPVIASGDYNVAHQEIDLKHP ETNHHNAGFTDEERKGFSKLLSLGFIDTFRYINGDITDVYSWWSQRIRTSKTNNAGWRID YYLVSQRLADKIEQSKMIDTGDRKDHCPILLKIDL >gi|311091660|gb|AEKJ01000018.1| GENE 142 128536 - 129228 518 230 aa, chain - ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 3 217 4 217 235 118 33.0 8e-27 MIYKQIIFDIDDTIIDFANTEYVALNSLFKFHGWNITPEIRKNYHAYNQGLWRLHEQGKL TYEELSEICFRDFIKREYDIDVNGKQIMAEYRHYFGNTHKLIPGAKEALQYFKNQGYYLA ALSNGETFMQKKRLKLANVAQYFDLIITSQEAQASKPNPAIFDYFFSRSKVSVNQSLLFG DGLSSDILGATNYGLDCVWFNHCHRKNLLRLTPLLEVDTYSDFIKYCKNH >gi|311091660|gb|AEKJ01000018.1| GENE 143 129234 - 129755 340 173 aa, chain - ## HITS:1 COG:no KEGG:LAF_0389 NR:ns ## KEGG: LAF_0389 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 1 163 2 164 171 162 50.0 4e-39 MKTTESELVKYIINFRLPRYDELPVMGLYLEQVANYLNEYLHAISETPITSSMISNYVKH KIISKPIKKLYDRDQIASLIFIALAKNILQLNDLKKGLVIQQGSYSTKVAYDYFCVELEN NLQYVFGLKDENKMEDNAPSPEKIMLHNMILTISYKIYLTKYFELYDITKNKG >gi|311091660|gb|AEKJ01000018.1| GENE 144 129878 - 130714 765 278 aa, chain + ## HITS:1 COG:SP0742 KEGG:ns NR:ns ## COG: SP0742 COG1307 # Protein_GI_number: 15900637 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 277 1 279 281 204 36.0 1e-52 MIKKIITDSGANILSSNILGQKHINVPLSIIIDNNIWLDDNNINIDNFIQAIINTKQKTS TACPSIATWLQAFAGADEIYVVTITSGLSATYNSAIQAANLYKEKYPNVKIEIFDSLSAG PQMRMIAERIAQDLNKNLTFDEVIEDVKQYQQTLQMVFILKDMKNLANNGRVNPTIAKLS KLVNLNIIGTVTDAGTFALISKARGMKKCYPKLLQAMIDQGYNGGKVEIDHVNNLSEAQL VASTITSTFPNADISFSLCTALCTFYAENGGILVSFEK >gi|311091660|gb|AEKJ01000018.1| GENE 145 130967 - 131980 987 337 aa, chain + ## HITS:1 COG:SPy0425 KEGG:ns NR:ns ## COG: SPy0425 COG0208 # Protein_GI_number: 15674552 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 337 1 337 337 566 78.0 1e-161 MSESYYDHSQAPVHFAYHDNGLNMRSINWNKIDDDKDLEVWNRVTQNFWLPEKIPVSNDL PSWNSLSKDWQQLITRTFTGLTLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHA RSYGTIFSTLCNSDQIDEAHNWVINNEALQARAKALIPYYTGNDPLKSKVAAAMMPGFLL YGGFYLPFYLSSRNKLPNTADIIRLILRDKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFV FALLYKLIDLEKAYLRELYKGFDIAEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIAPEV LAQLSARADENHDFFSGNGSSYVMGVTEETTDDDWEF >gi|311091660|gb|AEKJ01000018.1| GENE 146 131982 - 132407 414 141 aa, chain + ## HITS:1 COG:MYPU_5400 KEGG:ns NR:ns ## COG: MYPU_5400 COG1780 # Protein_GI_number: 15829011 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Mycoplasma pulmonis # 4 135 19 150 151 171 63.0 3e-43 MDKKILVVYFSTSSNNTHRFVQKLNWRSVRIPLDGTPIKVNEDYILIVPTYCGGRLHMHG AVTKQVIQFLNDKDNRSYCRGVISSGNTNFGDQFAVAGPIISKKLHVPFLYQFELLGTME DVENVLNILKTERWKQNNDEK >gi|311091660|gb|AEKJ01000018.1| GENE 147 132397 - 134574 1947 725 aa, chain + ## HITS:1 COG:SPy0427 KEGG:ns NR:ns ## COG: SPy0427 COG0209 # Protein_GI_number: 15674554 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 2 725 3 726 726 1047 70.0 0 MKNNETYISLNALTEFKDENGHFNFEADKKAVKAYIDEKINPNTKKFKSFRERLNFLIDN DYYDKDLLAKYNIEFIEKLTKKAYDQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYEDR VVMNALFLADGDEDFATSLLMDIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMES ISRSITTSLQLSKRGGGVALCLTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLG QRQGAGAVYLHAHHPEILKFLDTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALF SPYDIMREYGKPMSDISITKEYDKLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFE DTVNDRNPNKKEGRIVMSNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD YSEHFEHLVANSIRALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYN SPEAVDFTDMFFYATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTA TIKDLLNKYHFYIPSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVA PVETRKEGMVGRIYVPAYKIDNNNYKYYQKGAYEVGPAAIIDIVAAAQKHVDQAISLTLF MTDKATTRDLNKAYIYAFKKKCATIYYVRVRQEVLEGSENLAADEVIKTDKFKCTGSKEC QVCML >gi|311091660|gb|AEKJ01000018.1| GENE 148 134663 - 136555 1946 630 aa, chain - ## HITS:1 COG:lin2942 KEGG:ns NR:ns ## COG: lin2942 COG0445 # Protein_GI_number: 16802001 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Listeria innocua # 1 629 1 627 629 822 64.0 0 MKTYNSNEYDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGT VVREVDALGGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNL TLRQGMADELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSL PSIKLAENLEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLK DQLSCYMTYTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFL EPEGWKTREIYVGDFSTSMPEEVQLKMLHSVAGLEKAEMMRPGYAIEYDVIEPWQLKHTL ETKNIRHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPEFVLDRDEAYIGVLIDDL VTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLHKKEAIATTM KNIKSITIHPTEEVQNYLKDIKQDALNGAVNGADFLKRPRVTFDAIEKLTGKNLAADRYV KEQVEIALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESI AQAERISGVNPADLAVLTAYIQQGRIAKIK >gi|311091660|gb|AEKJ01000018.1| GENE 149 136567 - 137952 1427 461 aa, chain - ## HITS:1 COG:SPy1071 KEGG:ns NR:ns ## COG: SPy1071 COG0486 # Protein_GI_number: 15675063 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 2 461 1 458 458 469 56.0 1e-132 MVQVLTQYDTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGANLNKVASHTIHYGHII DYANKDVVDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQLILDNGARMATPGEFT KRAFINGRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHEEV NIDYPEYDMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSL LNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRA ITESDLVLLLINSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPIV TISVLKKQNMTGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLRKAKQSLIEAIEAINDN MPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK >gi|311091660|gb|AEKJ01000018.1| GENE 150 138052 - 138927 744 291 aa, chain - ## HITS:1 COG:lin2986 KEGG:ns NR:ns ## COG: lin2986 COG0706 # Protein_GI_number: 16802044 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Listeria innocua # 20 291 11 287 287 216 42.0 4e-56 MSDFLSKKNLKKIIVIATILLISLTITGCVSTSSNGSVPPLSNNSGSFWDRYILYYISSF ILWLAAILHNAYGWSIVVFTIIVRVVLLPLNAISIKSMAKQQSLQPEMEALRKKYSDRDA ETRRKLQEETSKLYKESGVNPYLGCLPMLIQMPIMIALWQAILRTPELQNGRFLWMDLGH PDPYMVMPILAAIFTFIASYIGQLSQAKSSNNAMTKGMTYVMPVFIGVMACSLQSALSLY WVISNLFQAIQTFFLQNPIKYYRELKLKQLQEKERKAKYRKIYKKFGRKIK >gi|311091660|gb|AEKJ01000018.1| GENE 151 138929 - 139300 262 123 aa, chain - ## HITS:1 COG:L131443 KEGG:ns NR:ns ## COG: L131443 COG0594 # Protein_GI_number: 15672110 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Lactococcus lactis # 1 113 3 112 117 102 53.0 1e-22 MRKSYRVKSEKDFQLVFETGQSMANKAFVLYQLDKVNQPHFRVGISVGKKVGHNAVLRNR IKRCIRAAITEDKHMIKKDVDFLVIARPYVKDLDMKCIKANLEHVMKLSNLLISDIPSQV EEN >gi|311091660|gb|AEKJ01000018.1| GENE 152 139350 - 139490 230 46 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227521920|ref|ZP_03951969.1| ribosomal protein L34 [Lactobacillus gasseri JV-V03] # 1 46 1 46 46 93 97 8e-18 MTTKRTYQPKKRHRSRVHGFMKRMATANGRKVLARRRKKGRKVLSA >gi|311091660|gb|AEKJ01000018.1| GENE 153 140012 - 141331 1289 439 aa, chain + ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 437 15 447 449 409 50.0 1e-114 MKKRYSEVAYNAWFKNTKPLSFDKNSKQMTISVESPVSKGYWEKNLASQLIQEAYAYTDM EIIPIFKIAGDTNSERFVVHKTQKKQEPVIENNHNEFAKDLQLNSKYTFDTFVQGEGNKL AAGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQMLTEKANAKIVYIQSETFVND FINSIKNKTQDLFREKYRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSD RLPNEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRKKAEADGLGIDDNTLDYVASQV DTNIRELEGALVKVQAHATIEREDINLNLAKEALADLKLVQKTRGLEISKIQEVVANYFQ TSTTELKGKKRVKQIVVPRQIAMYLSRKLTDSSLPKIGQEFGGKDHTTVMHAYEKIERSL KTDSEIKSAVYDLKAMLNH >gi|311091660|gb|AEKJ01000018.1| GENE 154 141491 - 142633 1204 380 aa, chain + ## HITS:1 COG:SA0002 KEGG:ns NR:ns ## COG: SA0002 COG0592 # Protein_GI_number: 15925707 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Staphylococcus aureus N315 # 5 380 2 377 377 306 45.0 4e-83 MEGHMKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKID IPKSDDLHIESTGSIVLPARFFSEIIKKLPGKDFSFEVKDSFQTKIMSENSDFTINGLDA DNYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEINAIATD SHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNINF YTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQI IKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRVSITDSIVIKFTKPLRPFV VVPKDSDEKFIQLITPVRTF >gi|311091660|gb|AEKJ01000018.1| GENE 155 142835 - 143080 140 81 aa, chain + ## HITS:1 COG:BH0003 KEGG:ns NR:ns ## COG: BH0003 COG2501 # Protein_GI_number: 15612566 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 17 71 7 61 73 65 50.0 3e-11 MSRVLCKWGGFIKDFVINGEFITLAQFLKEESIISSGGQAKWYLNENPVMLNGVLENRRG KKIHPGDQIVINKNLYNFIMG >gi|311091660|gb|AEKJ01000018.1| GENE 156 143084 - 144205 843 373 aa, chain + ## HITS:1 COG:BH0004 KEGG:ns NR:ns ## COG: BH0004 COG1195 # Protein_GI_number: 15612567 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Bacillus halodurans # 1 372 1 370 371 335 47.0 8e-92 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL IKFNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED LSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV LTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEKDSVEK IYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQVFINKKSAQEYASQGQQRSIVLSIKLAE IDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGKTQTFITTTDINSISQEMIKIPR IFRIVSGTVSEEK >gi|311091660|gb|AEKJ01000018.1| GENE 157 144206 - 146167 2264 653 aa, chain + ## HITS:1 COG:lin0006 KEGG:ns NR:ns ## COG: lin0006 COG0187 # Protein_GI_number: 16799085 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 8 652 3 645 646 823 67.0 0 MADNKNIQDQALNFEKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTSIQGLHHLVWEIID NSIDEKLAGFATKIEITVNEDGSVTVEDDGRGIPVDIQKKTGRSALETVFTVLHAGGKFG GGGYKVSGGLHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQH GTIVRFYPDPDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKNTAEKDIYHFEGG IKEYVSFLNQKEQVLFEPPVYVEGDYDGINVEASLQYITGYKSTLLTFANNIHTYEGGMH ESGFKAALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLG NSDARAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIA NLPGKLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRI LANQEIRTIFTALGTGFGADFDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMI KAGYVYIARPPLYQVRQGKIIKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQLW ETTMNPENRRLDRVDPEDAEDAEEAFEMLMGNEVGPRREFIEQNAKYVENLDA >gi|311091660|gb|AEKJ01000018.1| GENE 158 146177 - 148624 2729 815 aa, chain + ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 6 815 2 812 822 1002 60.0 0 MDNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVF PDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPA AMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGM TTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKG NIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQK GLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQE NIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFGLDDR QAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRF GDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIRGMGV QNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLEKGEKVQ AVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDELSNVLLTDGSQ NILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYVVGSSIVDDHSEVLVISEKGY GKRTLASEYPIKSRGCMGVKTANVTEKNGPLVGVTVVDGSEDLMLITDAGVIIRLEVDGV SQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSEI >gi|311091660|gb|AEKJ01000018.1| GENE 159 148802 - 149098 466 98 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518091|ref|NP_964021.1| 30S ribosomal protein S6 [Lactobacillus johnsonii NCC 533] # 1 98 1 98 98 184 90 3e-45 MAKTKYEITYIIKPDIDEDSKKALIERFDKVVTDNGAQELESKDWGKRHFAYEIEKYREG TYHILTFVAENAAAVDEFGRLSRIDGQILRSMTVKLDK >gi|311091660|gb|AEKJ01000018.1| GENE 160 149134 - 149589 654 151 aa, chain + ## HITS:1 COG:BH4049 KEGG:ns NR:ns ## COG: BH4049 COG0629 # Protein_GI_number: 15616611 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Bacillus halodurans # 1 151 1 168 168 174 57.0 5e-44 MINNVVLVGRLTRDPDLRTTESGISVATFTLAVDRQFSNSQGEREADFINCVVWRKAAEN LANFTSKGSLIGVQGRIQTRSYDNKEGQRVYVTEVVVDSFSFLESRRSRENKPVASNNFS TTNNVPTEEPKQDPFADTGKTIEISEDDLPF >gi|311091660|gb|AEKJ01000018.1| GENE 161 149618 - 149854 353 78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518093|ref|NP_964023.1| 30S ribosomal protein S18 [Lactobacillus johnsonii NCC 533] # 1 78 1 78 78 140 91 4e-32 MVQQRRTTHRRRKVDFISANHIDYIDYKDVDLLKRFISERGKILPRRVTGTSAKNQRMLT VAIKRARVMGLLPFVSED >gi|311091660|gb|AEKJ01000018.1| GENE 162 150022 - 152037 2318 671 aa, chain + ## HITS:1 COG:lin0045 KEGG:ns NR:ns ## COG: lin0045 COG3887 # Protein_GI_number: 16799124 # Func_class: T Signal transduction mechanisms # Function: Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain # Organism: Listeria innocua # 38 667 9 652 657 560 45.0 1e-159 MKDFLRKLELPAFVKDSRLTASLIIVLSLSFVGFIVGLLISPLYGLAMLLLFILTCTFSI YGIYVLAINTNNYASNLSYRIKRGEQEAMIKMPLGILLYDEDQQIQWVNPYLQLFLKNND MIGTSLKNLDEQLYKSINDAIRDKDTNNRVIRVGKHKCEIVVQNDLGVVYILDITKYAAI ERRYQDQRLSIGLIFIDNYDELSQAMGDQNLTDMSSYIQNALNEYAKRFNAYLKRIDEDH YLLLSHMIDLHKMEADRFSILDKVRKESSRCNTPLTLSVGIAFGSESLNDISEQAQSNLD LALGRGGDQVVVRQIGKDAHFYGGKSNPMEKRTRVRARVVSQALQELFKDADHVFVQGHK SPDLDAIGSAIGIVKIARIHGVKANVILDLSELNYDVERLIKKMQEAGVDQEIFISPDEA VQIATDNSLLVLTDHSKYSITYNQSIYDKMKNRLVVIDHHRRGEEFPENPMLVYIEPYAS STCELVTEMIEYQPQGGDGVLNYLEATAMLAGITVDSKEFSLRTGTRTFDAASYLRSIGA DSQVVSYLLKESIDNYLKRSYLVSTVDMVHSNMAILSGNDSEIYDAIIIAQAADTALSLE GVSASFAIARRSNSMIGISARSTGKINVQVIMEKLGGGGHLSNAATQLDNISVSEAKERL LQAIDSYLQEN >gi|311091660|gb|AEKJ01000018.1| GENE 163 152053 - 152508 603 151 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518096|ref|NP_964026.1| 50S ribosomal protein L9 [Lactobacillus johnsonii NCC 533] # 1 150 1 150 151 236 79 4e-61 MKVIFISDVKGKGKKGQIKEVPTGYAQNFLLKKGLAKEATSSNLNIQKRLEKAEHDAYEA EKAEAEQIKLKLEDDKTIVKFQSKAGNDSRLFGSISSKKIVEGLEEQFGIVIDKRKLMLP EPIKALGYTNVAVKLFKGIEAKIRVHITEKK >gi|311091660|gb|AEKJ01000018.1| GENE 164 152514 - 153887 1441 457 aa, chain + ## HITS:1 COG:L0286 KEGG:ns NR:ns ## COG: L0286 COG0305 # Protein_GI_number: 15672728 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Lactococcus lactis # 10 447 11 450 455 455 58.0 1e-128 MANIISQQIPHDSEAEKAVLGAIFLDNSAIVDAYDILKPDDFYERANKLVFQAMINISER DEGIDALTLQDELKKNNQLDDIGGIAYVSELAMSTPTAVHITYYANIVKRKAILRNLIFT SQNIIQNAIKDSDDITDILDDAERSILNVSQDNSQNGFKTIKDILSETIDNINNIPADGN MVTGLATGFVELDKMTTGFHDDEMIVFAARPGVGKTAFALNVAQHVGLYDKKTVAIFSLE MGAEQLVQRMLASQGLINSQHLRTGQLDSDEWNKLFVASGLLEATDIYIDDTPGIKISEI RGKSRKLAKEKGNLGLIVIDYLQLIEGGKSESRQQEVSFISRQLKKLAKELHVPVIALSQ LSRSVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRDDKSTDIKSEKDNGEVEII IEKNRSGSRGTVKLMFSKPYNRFSNLDFAHNNVPPEK >gi|311091660|gb|AEKJ01000018.1| GENE 165 153920 - 155086 997 388 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0015 NR:ns ## KEGG: LGAS_0015 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 382 1 378 380 401 50.0 1e-110 MANILNYMRWRGDLPFSINKFNSIDAAFFATFVYLPFPTINKKILLSDLASEYINNQDML KKVNGYEKEQLQLIPFCKRYGDLEILDWTNMIKTNPPVQFSAATFRLNKNTILVAFRGTD GSMIGIKEDIDLSFHPKTSGLTVAKHYLQRIATQFNNDNIYIVGHSKGGMFSQYAAIFAS QFIQDRIIKVYSFDGPGLMHNYYSPSKYKEVLPKFITYIPEGSIFGLMLDHPEHVLVVKS NANMLKQHNIIQWEVARNGFVLASNGLTNASRILRHSFISVNTKIPINDRESLWMAIFSA LESQNVVDFSQLRDSKLRSAINLSQAYMSLSPQLKIVANEVISIIATSAKNHINIPFINK AKLLKPLSNNSNKGPIVDDSYDQTMQKK >gi|311091660|gb|AEKJ01000018.1| GENE 166 155093 - 155779 681 228 aa, chain - ## HITS:1 COG:CAC3658 KEGG:ns NR:ns ## COG: CAC3658 COG1285 # Protein_GI_number: 15896891 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Clostridium acetobutylicum # 1 223 1 227 229 169 40.0 5e-42 MQNFPFFLDCFFRILIAALCGAAIGYERATLRKSAGIRTHIVVAVASALFMIVSKYGFFD ILKDTGIGLDPSRIAAQIVTGISFIGAGTILVRKAQVSGLTTAAGVWATAAIGTAVGAGM YTIGIISTCFLFIVQIVFHDDTFINFLIVHVRFNVQIEVDNVPNILNELKQILANNDVEQ VSLKLINASKDRLLINVDGIIKSRKDENDIIIALEKNNYIHRVSCARG >gi|311091660|gb|AEKJ01000018.1| GENE 167 156250 - 156630 397 126 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00111 NR:ns ## KEGG: LCRIS_00111 # Name: not_defined # Def: transcriptional regulator, xre family # Organism: L.crispatus # Pathway: not_defined # 1 111 1 111 274 86 45.0 3e-16 MTIDEALKEEQDKLGLTEEKMVQGIMSKSAYSRVIHNERNISSKALVKILFKNGIDIITF FSKIEDTYLSESSNLEKKLSCAIGEAVNNHEVDKVKLYYRIIVNSDVSSYLFFQEKIIGK KAINMS >gi|311091660|gb|AEKJ01000018.1| GENE 168 156652 - 157878 854 408 aa, chain + ## HITS:1 COG:VNG2231C KEGG:ns NR:ns ## COG: VNG2231C COG0477 # Protein_GI_number: 15791050 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Halobacterium sp. NRC-1 # 7 369 8 399 447 86 23.0 8e-17 MFSKKYSNIYKLLMGRIATNIADSLFYMAILWYFKENRNSQLMVSILFTISSGIDMMSFS LGPLIDKISIKGLLKYSTFIQIVISIIVVTILGIGQKSYIIDIVLLLLFIISSILSAIIY PSEYKLLPLFVTKKDLLRFNGLFQVTYKILDLILDGITTFIITFSSVSFTIIFSAVIFGI ALLFYHSIQINILAKNILEDDSYFTSSYFNDLLLGWKTLRKEKSILELILPLCVVNLFYG IFAVGLPFFAQTYIQTSALGYGKLLIASSFGSIIGAFLVQKFDLGKKNMGQFIAICFLGA GIFRLFVPLSVSVGIGLVLINSVISPLWITMMNTNFEALVQTSFSSAILGRVETINDSLL SIMIPIGTLLGGWIVKSYGSLITQYIYGIALICSSIYYFIVEKLKNTN >gi|311091660|gb|AEKJ01000018.1| GENE 169 158029 - 158361 156 110 aa, chain + ## HITS:1 COG:no KEGG:LBA0029 NR:ns ## KEGG: LBA0029 # Name: not_defined # Def: integrase # Organism: L.acidophilus # Pathway: not_defined # 1 105 155 259 411 190 94.0 1e-47 MDKAVLSVNPIPRSYLKLFFKQSDFSTGRKWYLFSKDEISALREELLKEYKGATIANSVS RLALIVDTYLGLRPEELQVLKFEQLVKYEGSYTFKIDDSWSEKEKSLMVL >gi|311091660|gb|AEKJ01000018.1| GENE 170 158550 - 158801 111 83 aa, chain + ## HITS:1 COG:no KEGG:LBA0029 NR:ns ## KEGG: LBA0029 # Name: not_defined # Def: integrase # Organism: L.acidophilus # Pathway: not_defined # 1 82 329 410 411 139 95.0 3e-32 MTQKSLNEKLKAVYKNAGIEKQKDSILALYSLRVYLSSLLGNDNRISNMYACQRMGNTIQ VFLSKYVKENRESYKENSQLCNR >gi|311091660|gb|AEKJ01000018.1| GENE 171 159067 - 160455 1688 462 aa, chain + ## HITS:1 COG:L0046 KEGG:ns NR:ns ## COG: L0046 COG0362 # Protein_GI_number: 15672604 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Lactococcus lactis # 4 461 6 471 472 483 50.0 1e-136 MQQFGVIGLSVMGKNLALNIRNHGFSVAGFSIDKPEVDALAKYEDDKLKPTYSWEEFINS LEKPRKMLIMIRAGKPVDMTLEKLTELLEPGDIVIDGGNSNFNDTNRRFKKLEEKGIHFI GMGVSGGEEGALNGPALMPGGDKEAYDKVSPILESIAAKTEEGVPCVAYIGPEASGHYVK MVHNGMEYGIMQIICEVYDVLRTVGNCTNEQMSEIFEKWDEGQLHSYLTEITSKVLKQRD DLADGYIVDKILNVASYKGTGNWMLEDAIKLGCPITVIAEAVLARFASKATLRDGCMPEF KGKVDLNQLITKLANAYYLASAVSYAQGFQQLSMAAKEYGWNLHYPAIAQTWEAGCIIRS SMLKDIENAFNQDADLPNLFKDKYFNDIANKYTTDLAEIVQLAVEAGIPIPTLGAAYSYL KTIFNPKLPQNLLQGQRDYFGAHTYYRNDRDGVYHMEWYTEK >gi|311091660|gb|AEKJ01000018.1| GENE 172 160523 - 162073 1289 516 aa, chain + ## HITS:1 COG:L113400 KEGG:ns NR:ns ## COG: L113400 COG0038 # Protein_GI_number: 15673646 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Lactococcus lactis # 13 497 16 493 512 274 35.0 4e-73 MISKKVKISAYKVLMQALLVGLLVGIVVGIFRFGIEKMSALWLKLFELTHDNPYWFVVVV VGLILTGVIAGYFVHQQAHVGGSGIPEVKLQLQGKLDIPWWPILWRKLLGGIMVISTGIF LGPEGPSLQLGSTIGQGVGEKFKQSKTNSRILLATGAASGLAAAFGAPLSGVMFVLEEVF HNFSSRVWMNALAGAIAADFVVSNVFGQKAVLAIPYKHTFPVNLYWQLVILGVILGLLGQ LYKHSLFSFKKIYTHITWIPRWLHGLIPLLMVIPIAYYLPAITGPGHRLIFSLSGFITKS GWNVVLLLISFYILRIVFSIFSYDSGLPSGIFLPILAMGAVIGASYGMLMVNLHLMPAHL VVNLIIFSMAGYFAVIIRAPFTAIILITEMVGSLLHLMPLAVVAFVGLIIDNLMDGKPIY GMLAAHMQLNDMTQDESGHEDQITVPVYEGSSMIDKSISQISWPKNTLVKLIKRGSRDII PNGKTKIVAGDALILVIDEGQRATVYDEMTKLQGFI >gi|311091660|gb|AEKJ01000018.1| GENE 173 162233 - 163543 1187 436 aa, chain - ## HITS:1 COG:YPO2459 KEGG:ns NR:ns ## COG: YPO2459 COG0477 # Protein_GI_number: 16122680 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 14 435 15 432 452 175 30.0 2e-43 MQENYNKKNYQYAPFSKVHLRVYIAICLGQIACGYSLGISGLAIEAANKYLNITSIWNGL IGSGTLIGLGGSIFMGRLADKIGRHHMLMINMYVLSFLSIIQLFTSNLLFTFIIRIGIGL MIAIDYTVGNALLIEWMPIQEGAKKQSSILLYWTLGFVISYPIGLIIHGFGPLTWRIILA SVAFFSLIAALYRTSFNLPGSPSWLASRGNFVDANKIIQYQLGKKWGLPKHLERYKPIKS LSWTELFNKHYLRRTIVGGGFYACQSFAYFGISIFLPLILKSMNLQNNYLPGIIYNIGIF VGVSIGVVIFNHIGRKIFLTSTFLISAISIGLLALSLHANAWIKVVLFLIFAMSLSSGLV FDYTYTTELFDVKIRATGVGTCIAISRIGAFLGTFLLPIINQNYGTSTAMFICFIVLVFG ALICGILAIETTALSK >gi|311091660|gb|AEKJ01000018.1| GENE 174 163555 - 164865 1115 436 aa, chain - ## HITS:1 COG:SA2050 KEGG:ns NR:ns ## COG: SA2050 COG2252 # Protein_GI_number: 15927833 # Func_class: R General function prediction only # Function: Permeases # Organism: Staphylococcus aureus N315 # 4 435 1 443 444 359 47.0 7e-99 MQILDNFFHLKKSKTSIKQEFIAALTTFVSLSYILFANPNILHDAGIDKGAAFTVTAIAT AIGCFLMGIIANYPIALAPTLGSGAFFAYNVCIGMKIPWATALAAVLLASILFILITILK LREMVVDAIPQDLKYAISSGIGLFIAFIGLQSSKLIVNSNSTLVKLGSFNNPDTWVSMFG IILTVILVASRIPGSIFIGMLLTALFGIIIRQIPLPNSIVSSAPSIAPTFGKAILELKNI NTTQLFMVVITFLLVTFFDTAGTLIGMTQQAGMVDKQGKIPRIGKAFLSDSLAMVEGAIL GTAPLGTSVESSAGIAMGGRTGLTSILVGFLFIISLVFSPLLTVIPSTVTSPALIIVGVL MAANLKNIHWHEFEIAFPAFLIVIGMPLTYSISDGLALGMIAYPITMIAAKRYKEIPKMM YILLIIFIAFFIITNL >gi|311091660|gb|AEKJ01000018.1| GENE 175 165210 - 166307 1335 365 aa, chain + ## HITS:1 COG:lin1425 KEGG:ns NR:ns ## COG: lin1425 COG1744 # Protein_GI_number: 16800493 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Listeria innocua # 14 362 12 357 357 278 44.0 1e-74 MKKSFKSVLKAGLILTTVGLLLSACAGKKQGGASSDSKTTKHNIALITDVAGVDDHSFNQ SAWTGFKQYGKEHNLGRGNNGYQYFQSNGASDFVPNIEQAVNANFETIFGVGYSLKDAIA QSAKKYPKKNFVIIDDWIKNQKNVVSANFKSQDASYLAGVVAAYTTKTNVVGFIGGVHGH IVDLFDAGFTKGVQDTAKKLHKNIKILNQYAGSFVSSDKGRAIAQTMYAKKADIIFHAAG KTGDGIFQAAKAINQTKPANKKVWVIGVDSDQSSLGEYVAKGGQKSNFTLTSVITGVNVA VKDIADRAYRKQFPGGKSLNYGLSNDGVAIVHNTDIPNKVWIASQKARTNILKGRIKVPI HPKNK >gi|311091660|gb|AEKJ01000018.1| GENE 176 166443 - 167531 1407 362 aa, chain + ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 6 358 3 350 350 280 47.0 3e-75 MHLNLKKSITLGLVVTAMGILSAGCSHNTQNGAGNSDKKHSIALITDFNGVDDHSYNEIA WKGFTDYGKEHHLKRGAGGYQYFESNGASDFVPNLNQAASAGYQTIYGVGFTLTDSIKAA SKKNPKRNFVIVDSVITGRKNVVSTIFKSNDASYLAGLAAAGTTKTGKVGFVGGVRSSVI DLFEAGFRKGVADGAKALKKKVTVNVQYVGDFTSTDKAKSIAKSMYADNADIVYQAAGQA GNGVFQEAKDYNKTKLAKQKVWVIGVDIDQEKLGNYVSKDGKKENFTLTSVLKGLDVVCK DIADKAYHNKFPGGKTLVYGLDSNGVSLTRGHIDAKTWSSIKKARQAIIDGKIKVPVKPA KK >gi|311091660|gb|AEKJ01000018.1| GENE 177 167599 - 169119 1509 506 aa, chain + ## HITS:1 COG:SPy1227 KEGG:ns NR:ns ## COG: SPy1227 COG3845 # Protein_GI_number: 15675191 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 7 504 4 501 510 578 61.0 1e-165 MDNTVDNVIEMRHIVKQFGNFRANDDINLTLKKGEILALLGENGAGKSTLMNILSGLLQP TSGDIYVNGKKVIIKDPNTAKRLKIGMVHQHFMLAESFSVLENIILGNEITKGCFIDFKK EKEKIIELSKQYGLAVNLSAKISQTTVSQQQRIEILKVLYRGADILIFDEPTAVLTPQEI TEFIKVIKGLVHEGKSIIFITHKLKEIKEACDRVTVIRRGKSIGTIDTSATTDQQLADMM VGRKVNLNVTKPSSNIGDTILDVENLVVKDSRGVQIVKKLSLQVHRGEILGLAGIDGNGQ DELVEALTGLRHVESGCIRIKGHDSTNQQVRKITQCGVAHVPADRQKYGLILSMSLADNL ALQTYYEKPLSKHGFLQKKEMIKKAERLVKGFDIRAANLMIPAGDLSGGNQQKAIIAREL DRNADLIIVFQPTRGLDVGAIEYIHEQLLKQREAGKAVLLVSYELDEILKLSDRIAVIHN GQISGTVLPADTNERELGLLMTGAVR >gi|311091660|gb|AEKJ01000018.1| GENE 178 169128 - 170240 1309 370 aa, chain + ## HITS:1 COG:L166804 KEGG:ns NR:ns ## COG: L166804 COG4603 # Protein_GI_number: 15673311 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Lactococcus lactis # 6 360 4 359 364 309 49.0 7e-84 MIGKKKINKALISLIAILMGFIVGALIMLVWSYNPITAYTYMFQGALGTPLELGETLREM TPLVFTAIGFAVADKAGFFNIGLPGQAQAGWVTSVWIVLANQHLPKIILIPLALISGAIA GAVVAGIAGVLRAYFGTNEVITTIMLNYIVLYVCQYLTQQIMPEKLRINIDTTKTISDNG SLRWEWLTNMFGGSRISSGIFLAIIGLIAFYIIMNKTTIGFEIKAVGLNPHASTYAGISA KKNIIVSMLLSGAYAGLGGVILGLGTYQNYFTQTGNVDIGFDGLSVALLGGNTAVGIFLA ALLFSILKIGGLGMQTGAGIPYEIVSIVIAAIIFFVAIHYIIEYLLNYKKVMKHSCTSDK TQGLEVGGSK >gi|311091660|gb|AEKJ01000018.1| GENE 179 170240 - 171196 970 318 aa, chain + ## HITS:1 COG:SPy1225 KEGG:ns NR:ns ## COG: SPy1225 COG1079 # Protein_GI_number: 15675189 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 318 1 318 318 392 65.0 1e-109 MDIVSMLSLIVSSTLVFSAPLMYSAIGGTFSEHGGIVNIGLEGIMTMGAFSSIVFNLSFY KQVGIWTPWLGALIGGIVGLIFSLLHACATINFHADHIISGTVLNLMAPAFSVFLVKAIY SKGQTENITENFGYFTFPVLGQIPIVGKIFFRNTSAAAWLAIVIAVISWEIMFKTRFGLR LRACGENPQAADTMGINVYLLRYDGVLLSGFLAGFGGAVFAQSISGNFSVSTIVGQGFMA LAAMIFGKWNPLGAMGASLFFGFAQSLSIIGKQLPMIEHLPSVYLQCTPYLMTIIVLVLF FGKSVAPKADGINYIKSK >gi|311091660|gb|AEKJ01000018.1| GENE 180 171226 - 172182 873 318 aa, chain - ## HITS:1 COG:L0194 KEGG:ns NR:ns ## COG: L0194 COG0276 # Protein_GI_number: 15673549 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Lactococcus lactis # 2 306 5 306 314 240 39.0 2e-63 MQGLLLVNLGTPTSPTKNDIEQFILDFMGDPNVVNMPQWMWKPLLKHVILPIHIKKSIIS YQKIWSQNGSPLRFYTEKITQQVQALLPDWQVKMAMTYGDPSINTTIQEMKNNGCDHLVL LPLYPQYANCTVKTIIATAKQTCSNLDLPLTIIKHFCTNNEYLEILVKDIQHYWDLDKYD HLYISYHGIPQSAIKKGDIYLKDCTAQTQAMCQMLNIPSEKITMVFQSKCGLMPWLKPYL NKTLIQAAKDGIKKVLIVTPSFVTDCSETIAEDAIDNKNLFIKYGGENLTVVPPMNDSPA FAQFLTTLATNVNKTKKG >gi|311091660|gb|AEKJ01000018.1| GENE 181 172358 - 173851 1680 497 aa, chain - ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 7 483 6 478 492 430 50.0 1e-120 MSQKNSDTAFFGQPKGLSTIFYTVMWERFSYYGMRAILIYYIYYAVNKGGLGMSQYNAAA IMSIYGSLVFISTLLGGWISDRIWGTYKTTFIGGILIMLGHICLSTPLGVAALYLSIAFI VLGSGFLNPSASATVGNLYDKNDQRRDAGFSLYVFGINFGAMIAPIVVPWASSGFGFHLF GNVTNFHAGFVLAAIGMLLGLIQYYFAGNKYLPAKSFKPEDPMTKQEKKQVLIKFSYGLI SLLIVLGAMAFLHALNINNIINLITIIAVVLPIIYFTIIFKSNKVSHSERRKVIAYIPLF LAAIIFWGIEESGAVVLALFAENRTVLHVGSWYFQAANFQLLNPLFIMILTPIFVALWNS WKKQPTAPTKFAVGLGFAGLSYLVMAIPGALFGTSGRVSPLWLVLSWFIVEIGEMLISPI GLSVTTQLSPKVFKTQMMSLWYLSDAVAQAINAQIIRFYTPKTEVNYFIAVGIVSIVFGI LLLFGVKKISALMGDSK >gi|311091660|gb|AEKJ01000018.1| GENE 182 174028 - 174732 708 234 aa, chain + ## HITS:1 COG:L14408 KEGG:ns NR:ns ## COG: L14408 COG0363 # Protein_GI_number: 15673555 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Lactococcus lactis # 1 234 1 234 235 286 59.0 3e-77 MIVTIVKDKYEGGKKAFELIKKGVADGAKVLGLATGSTPITLYDQMVESDVDFTNITSIN LDEYYGLDPQNSQSYHYFMKKHLFEKKPFYKTYIPNGKSKDINQEISDYDKIISDNPIDI QILGIGGNGHIAFNEPGTPFDSTTHEVTLASSTIKANSRFFDNQDDVPKRAICMGIKSIM SAKQIILMAYGAAKQDAVKAMVEGPVTETVPASVLQKHPNVVVIVDRDAAAKLS >gi|311091660|gb|AEKJ01000018.1| GENE 183 174854 - 175498 622 214 aa, chain + ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 211 1 212 217 219 54.0 3e-57 MTVIVLSGPIGAGKSSLTKILADELHGQAFYENVDGNPILPLFYKDMSKYTFLLNVYLMN HRLEQINCANKMKNSVIDHSIYEDSVFFKMNVDNGIADSTEFKIYRDLVNNMMEDVPGSV HKKPDLLIYIHASLDTMLKHIKQRGRIFEQLSTDPKLEEYYACLNSHYDPWFEQYDASEK LMIDGDKYDFVNDVSARKIVVNQVMEKLHNLGKL >gi|311091660|gb|AEKJ01000018.1| GENE 184 175511 - 176176 792 221 aa, chain + ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 211 1 212 217 243 58.0 2e-64 MAVIVLSGPIGAGKSSLTSILSKYLATDPFYESVDDNPVLPLFYENPKKYAFLLQVYFLN TRFKSIKKALSADNNVLDRSIYEDALFFQMNADIGRATKEEVTTYYELLDGMMAELKAMP KRQPDLLIHIHVSYETMIKRIQKRGRKYEQLSYDPTLEDYYKRLLTYYKPWYDQYNYSPK MVIDGDKYDFMNSADDCDKVLKMIVAKLKEVGKLPQDWTKL >gi|311091660|gb|AEKJ01000018.1| GENE 185 176198 - 177508 1490 436 aa, chain + ## HITS:1 COG:BS_yebB KEGG:ns NR:ns ## COG: BS_yebB COG2252 # Protein_GI_number: 16077704 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus subtilis # 4 433 1 439 440 384 52.0 1e-106 MNIIKKYFSLDEAHTSIKIEFLAGLTTFISMSYILFVNPSVLGASGMDKGAVFTATALAS ALGTAIMGIVANYPIGEAPALGINAFFAYTVCIGMHVKWQTALASVFVASVLFILITLLK LREKIINSIPADLKFAISSGIGLFIAFLGLQNSGMIVGNKATLVSIGSLENPLVWITIFG LLLTVVLMILNIPGSIFIGMVFAAIFGIVIGQIAVPTKFISFAPSLKPIFGQAIYHIGDI NTVQMVVVVLTFLLVTFFDTAGTLIGLAQQAGFIKNNKMPRVGKALAADSTAMMAGSVLG TSPVGAFVESSSGIAVGGRTGLTAVFISIFFLISMLFSPLLSIFTAQVTAPALIIVGVLM AQNTAHIHWDRLEIAVPAFLILLGMPLTYSISDGISLGMITYPICMIAAKKYKEITPMMW VLFFIFIIFLWILNIK >gi|311091660|gb|AEKJ01000018.1| GENE 186 177526 - 178173 430 215 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1838 NR:ns ## KEGG: LGAS_1838 # Name: not_defined # Def: metal-dependent membrane protease # Organism: L.gasseri # Pathway: not_defined # 1 214 1 212 215 163 47.0 5e-39 MKKIISHLIHALYIFFAFFIYTLLQLLYFFRIPKTWKPFYNILAVAISLVGILLLAYLYY KGLKHQKLSFNNKPHWDIKRILFSLGMFILLIVCQVVMIKFFYANHISANQKELIHMQQR VGSLFKVLVILVAPFCEEIIFRGLFFNYFFTQDNIYSKTFGIIINGFLFAWLHDPTFSIF IYLYWVMGMILAFTYLQTKDLRYSILVHMLNNMLG >gi|311091660|gb|AEKJ01000018.1| GENE 187 178221 - 179381 1135 386 aa, chain - ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 381 1 376 379 242 44.0 8e-64 MHFLGELILILLITTILGQLFTRLEMPAVIGQLLSGIILGPAILSLVHPNQTITLFSEFG VILLMFLAGLESDIDLLKKYFKLSFTVASTGVILPVLFISTSCLFFKMKPLEALFIGIVF AATSVSISVEVLKDAKQLNSRAGTAILGAAVVDDILAVVVLSLFTTFSHEGGRSGLTNNF FINIVIEIGYFIVVWLIYKFIAPYFMRIAEKISVSYSVVIASLILSLTMAWVADFVGLSA VVGAFFGGLAIRQTPQYEEVAESVSAIGYSIFIPVFFAEIGLVMTFSSIIQDAIFIILMT ILALLSKFWAGKYSSEYFGFTPLEGNIVGAGMISRGEVALIVAQIGIAHHLFPRDIYSSL ILVIIVTTVISPFILNYYIKKTPQLS >gi|311091660|gb|AEKJ01000018.1| GENE 188 179567 - 180058 274 163 aa, chain - ## HITS:1 COG:lin1008 KEGG:ns NR:ns ## COG: lin1008 COG0517 # Protein_GI_number: 16800077 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 144 1 143 150 85 40.0 5e-17 MFSPAIKNLLDKKSGTFFIPASKIAFVQDDAPLYHAFLILTKVRYAKIPVLNKEKCVVGL LSLAMITNKMLLTDHISTNPLTILKVKDVMQTTFSKINFTQTTLETQLHLLIDNSFLPVV NDTGIFQGILTRREWIKAFNFVVHNFEDYYNVIPIKNQNKNNN >gi|311091660|gb|AEKJ01000018.1| GENE 189 180209 - 181357 1205 382 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1737 NR:ns ## KEGG: FI9785_1737 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 381 1 382 383 467 60.0 1e-130 MKIFKKVFRSCFIVLSLSLVVIISFIAYHSYLEHKSVKINVYSRPALIKAADGNSISPSY NSLYAYKKRLSERYPNIYQAAFDAPSQSHIGSNVTIPGLVVTRAYDYTKRKITEADEMTP QGITIADKYILVSAYDAKNRHASVIYVINSHTQKYVKTIQVPGRPHLGGITYDPVAHNIW ITGRQNGQAALMSFSLKKLKRYDYKKKHKSVQYDHIVTLPTVERASCVTYYDNQLFICLF NKYCKGQIVSYPISRTKPYKGTIISDQIKAVTGEVSWALGSGSAGLDPQIQGLAFYQNRI ILSQSYGSQDSKLYFYSTSALNNLDNSKADKVVNLPPYLEQIHAVDGQLLMLFESGSKAY ARDNMMVMDRILSVNINALLGS >gi|311091660|gb|AEKJ01000018.1| GENE 190 181374 - 181670 274 98 aa, chain + ## HITS:1 COG:no KEGG:LJ1785 NR:ns ## KEGG: LJ1785 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 2 93 1 92 96 65 38.0 6e-10 MILPEVRRWIRISGWLGIFVAYIILQMYNYTHQPMFIVSLVIVILYSAYMLATSAEPSWY VTSIMLRRIIICICLVSIIQGVFLCIAYYKLKKSRTIK >gi|311091660|gb|AEKJ01000018.1| GENE 191 181733 - 181888 57 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259500728|ref|ZP_05743630.1| ## NR: gi|259500728|ref|ZP_05743630.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_02255 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] D-Ala-teichoic acid biosynthesis protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0580 [Lactobacillus iners UPII 143-D] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] D-Ala-teichoic acid biosynthesis protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0580 [Lactobacillus iners UPII 143-D] # 1 51 1 51 51 69 100.0 6e-11 MIKINDKNKTCLKNISIFVLKTLFYFAILLVLVYLYSYSGIGAAKFIYKDF >gi|311091660|gb|AEKJ01000018.1| GENE 192 181907 - 183424 1820 505 aa, chain + ## HITS:1 COG:SPy1312 KEGG:ns NR:ns ## COG: SPy1312 COG1020 # Protein_GI_number: 15675261 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pyogenes M1 GAS # 1 504 1 511 512 461 45.0 1e-129 MIKDIIQKIDGIALEDPHRLAYDYLGNTKTYGELKLRSDQYATKINSLGLASKEPIMIWG GQTFDVIAAFLGCLKSGHAYIPIASYSNSDRLFMIQDVSKATTVIAVDPLPVAVEGVNVI VPSDIDKIDSVKINEADFVAGDDNFYILFTSGTTGKPKGVQISYNNVVSFLNWEFADFKL PDRPKFLAQVTYSFDVSVMSIYPALLSGGSIVVMPHEITSNLGQLFKILPNLKFNVWVST PSFVEMCFLDPTFNQEHHPDITHFLLCGEEFGHRTAQMLHNKFSNSHIFNTYGPTETTVA ITQVEITDEILKKYNRLPIGKVKEDTVITIDTTKGQKESQGEIVVTGPTVSKGYMNDPER TKKVFFHQDGQKYPSYRVGDLGFFEDGMLFYRGRIDFQIKFNGFRIELEEINFYLSKNPL VRYGVVAPKYNKDNKVQQLVAVVELAEGVKEKYSEKEITQQIRESLEKEVMPYMIPQRFV YKDKLPISQNGKVNIKQVIKEVNNA >gi|311091660|gb|AEKJ01000018.1| GENE 193 183421 - 184638 721 405 aa, chain + ## HITS:1 COG:SPy1311 KEGG:ns NR:ns ## COG: SPy1311 COG1696 # Protein_GI_number: 15675260 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pyogenes M1 GAS # 4 404 11 413 418 350 47.0 3e-96 MINLQPYTNPRYFIILFIALLPLIIGLYNGKRYKNYEAFISFLFLFLMFSGSEWIQGVQI IGYVIFQFLITFLYQKYLKKGKNSTKVFVCAVIASILPLALVKIAPLVPTDVSSLIGFVG ISYLTFKTVQVIMELRDKTIKSVDPVTYARFLLFFPTISSGPIDRYRRFQKDYDTAPTRD QYLDYLEKGTFYIFQGFLYKFIIGYVFGTLWLPQLAKTALFIGKANGGLRLSWALVGYMY CYSMYLFFDFAGYSLFAVGTSYFMGINTPVNFNKPFISKNIKDFWNRWHMTLSFWFRDFI FMRFTFFAMKKRLIRNRIRLSQIAYLLNFLIMGFWHGITWYYIVYGIFHAVAIIINDIWL RFKKKHSDHIPHNKFTEAFAIFLTINIVCFGFLIFSGFLDTLWFK >gi|311091660|gb|AEKJ01000018.1| GENE 194 184684 - 184923 431 79 aa, chain + ## HITS:1 COG:SP2174 KEGG:ns NR:ns ## COG: SP2174 COG0236 # Protein_GI_number: 15901984 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 78 1 78 79 76 53.0 1e-14 MDIKQIVLDILNELTGEDLSSRMDDNLFDTGLLDSMATVQLLLELQEQCDVTAPVSEFNR DEWNTVNKIIAKVESLKNE >gi|311091660|gb|AEKJ01000018.1| GENE 195 184916 - 187201 2357 761 aa, chain + ## HITS:1 COG:SPy1309 KEGG:ns NR:ns ## COG: SPy1309 COG3966 # Protein_GI_number: 15675258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Streptococcus pyogenes M1 GAS # 6 420 4 416 416 323 42.0 1e-87 MNSKSRLLHIFGPLICAFVLLELVLLYPWTTNIKSEQLLYKASVSCSKNIFKGQEIKQAA FSKEYVPFYGSSELLRMDCCHPSVLAYKYKRDYKPFLLGGPGSQSLTQFFNMQETVQQLQ NKKAVYIISPQWFTKQGQNPNAFGLYFSQLQLVNWLLSAKDSIATRYVARRLLSMPKVAI NSNVITNYALMMIASGKKLTPEQLLWFRIRRRMLLNEDNFFTSMFCDDNVDHIKKVSEKL PDKYDLNKLHEVATLEGKLNTNNNSFGIANQFYTKRLNNANLQRLKGAQKTFNYTKSPEY SDLQLVLSEFAKEHVNVLFVIPPVNKKWSDYTGLSSKMYQKTVAKIKQQLISQGFYNIAD LSRDGGKPYFMEDTIHLGWNGWLEVDKYVRPLMKQCNIPISYNLKNYYFSKTWANKVNIK HTTKQLTPKKQAQLHIKQALDNAKVRGNVLVIKNNKPFLNYQNSYADYDMKKETLPNSSY LINSTQKVMTAVMLMKQVEKGRLSLSDKLSKFYPQVPFADKISISQLLSMTSGLATRPRA ILGTSTFKSNQAGIRYDIKKNIIFSPKLYNKRYYDSFNYVLISGILEKITHKTYEQLFTA TYIKPLALKHTAFAWSKPAKMLEIGAVNSYQSLDNVSNPLVKVNIDINQLHGLVGAGNIY MSNADLYKTIRYILQGKIISNQSIKELFNKVNNKNDGSNYMGGFYNFVSFKSCNGYGYGF SNFVRISKDGSNAIIVQTNMPIKRFFALRATMNKLILGLSN >gi|311091660|gb|AEKJ01000018.1| GENE 196 187254 - 189695 1454 813 aa, chain - ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 252 813 332 896 896 441 41.0 1e-123 MNKKVLWRYSIHSITNSITRFIAITLLLGLGTFALLGLKSTGPDMRAIGRQFFVKQNLAD LIITSNYGIDNIDKKLLQNFKDTAKLECGYQQDVITKKNNLAIRIFSKPKNISIPKVVTG KMPSKANEIALSFLLQNKFHIGQTITFKHSATIKSHSFKIVGFIKSPEYLDRSFVGQTNI GNGRLDGFATITKGNFQSPVYHVARLKLKKVKHIDPYNKKYNQFVYSDQQKLYKLLNANL SHKDMQANLFKNTLGLPYYTVQSRDNLESYTQYISNSKKIDILSNVFPVFLFAVAGLVTF STMTRFIDSDRINIGTLKGLGYSNLDIALQFIIFSTLASSLGIFIGAYTGFNYLPNIIMK AYLANSILNDQLINLISVPLLIEAIIICVSSTIVASMWALWGALREEPKALLLPKQPKLG SSILLEKIPPLWNRLSFSLKITARNVFRFKSRMFMTILGIAGCCALLVMGLGIRDSLKEI ADTQYGDIIKYDLIALHNHQIPQNNSHYQSIINDNYVKRHTYINYKVCHTKQPHKFIDSN IQVIAFADKNVLKKYFDLRNRKNKERYLLNSSGAIINEKLAKIMHVKVGDKLTFKDNYNH TKKVTISHICEMYLGHYLFMNRKTYQKVFQTSYTSNADMISLKSHKDLNKFNEKLLKTNN LQTILSNQTSFKTLKNFTGNLTEVIIILIIMAIMLALIVIYNLTNINMLERIREIATLKV LGYFSIEATMYIYRETIILAIFGIFGGWFLGFLLHKFIIVQLPPSFAMFDPNIYLDNLLI SAIIPLVVTTILAFIIHFKIKKQDMLQALQSVE >gi|311091660|gb|AEKJ01000018.1| GENE 197 189705 - 190406 209 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 197 1 201 318 85 29 2e-15 MTYIDIKNCTKIFKNGMEKIYANNNINFVINRGELVIILGSSGAGKSTLLNILGGMENCS SGDIIIDGKNISHYSHKKLTKYRRYDVGFVFQFYNLIPNLTAKENVELAAELVANAMPAD KALKLVGLENRMNNFPSQLSGGEQQRVAIARAIAKNPKLLLCDEPTGALDYKTGKKILNL LQTMCHNSGVTTIIVTHNSAIAPIADKIIHIQDGQVKKIDINSDPTSIDDIEW >gi|311091660|gb|AEKJ01000018.1| GENE 198 190602 - 192017 1198 471 aa, chain + ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 1 463 1 460 463 357 44.0 2e-98 MSNFFKKVSIDTYLKSDARLVRSLNARDLIALGIGAVIGTGIFILPGHEAADHSGPAVAV AFFLAAVVSGIVGMAYAEFSSAMPVAGSAYSFGSIIYGEIVGWILGWSLLLEYFLAVSAE ATGFASYFNDNILNSFGFNLPKSLQAGPLQGGIINLSAVLITLIVAFIIYQGANLSKRVE NIAVIIKVSIIILFIIIGIFYIKADNYIPFYPKKFQTAPFGIGGISTAAATAFFAFIGFD ALASNSAETIKPEKNVVRGILGTVLISVVLYVAFSLVLTGMVNYKKLGVDDPAAYALKSV GLHSFNKIITLGALIGIFTAMLTMLLGGSRLLYALGRDHLLPPVMGKVDKVREVPDNAII IATIVAAFFAGLVPLFELAALINAGTLLAFTLISFGIIPLRKRKDIVNKGFKMPLYPVLP ILAGVFSLYFIFMLPILTKIMVTLWLIVGLLVYIFYGVKHSKLQNQESYKK Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:50:51 2011 Seq name: gi|311091648|gb|AEKJ01000019.1| Lactobacillus iners LEAF 2062A-h1 contig00026, whole genome shotgun sequence Length of sequence - 9132 bp Number of predicted genes - 10, with homology - 9 Number of transcription units - 5, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 371 - 430 4.5 1 1 Tu 1 . + CDS 475 - 672 282 ## gi|309807039|ref|ZP_07701020.1| hypothetical protein HMPREF9212_0194 + Term 695 - 737 1.1 + Prom 722 - 781 3.0 2 2 Op 1 . + CDS 904 - 1119 370 ## gi|312875505|ref|ZP_07735508.1| conserved domain protein 3 2 Op 2 . + CDS 1094 - 1474 277 ## HMPREF0868_0548 hypothetical protein + Term 1475 - 1508 0.2 + Prom 1606 - 1665 4.0 4 3 Tu 1 . + CDS 1728 - 2033 309 ## SAAV_0828 hypothetical protein + Term 2080 - 2124 -0.9 + Prom 2051 - 2110 4.4 5 4 Op 1 . + CDS 2137 - 2328 248 ## 6 4 Op 2 . + CDS 2345 - 2656 357 ## gi|315653199|ref|ZP_07906123.1| conserved hypothetical protein + Term 2801 - 2870 26.3 + TRNA 2673 - 2744 64.0 # Glu TTC 0 0 + TRNA 2763 - 2853 53.9 # Ser TGA 0 0 + TRNA 2864 - 2937 77.0 # Met CAT 0 0 + TRNA 2940 - 3012 62.0 # Asp GTC 0 0 + TRNA 3019 - 3091 78.2 # Phe GAA 0 0 + TRNA 3099 - 3180 64.5 # Tyr GTA 0 0 + TRNA 3185 - 3255 49.9 # Trp CCA 0 0 + TRNA 3270 - 3345 56.4 # His GTG 0 0 + TRNA 3350 - 3421 65.9 # Gln TTG 0 0 + TRNA 3445 - 3515 71.2 # Cys GCA 0 0 + TRNA 3549 - 3632 61.6 # Leu CAA 0 0 + Prom 3551 - 3610 80.3 7 5 Op 1 25/0.000 + CDS 3745 - 4899 1198 ## COG0438 Glycosyltransferase 8 5 Op 2 4/0.000 + CDS 4901 - 5944 1030 ## COG0438 Glycosyltransferase 9 5 Op 3 . + CDS 5944 - 6954 370 ## COG0392 Predicted integral membrane protein 10 5 Op 4 . + CDS 7013 - 9082 1570 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Predicted protein(s) >gi|311091648|gb|AEKJ01000019.1| GENE 1 475 - 672 282 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309807039|ref|ZP_07701020.1| ## NR: gi|309807039|ref|ZP_07701020.1| hypothetical protein HMPREF9212_0194 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_1153 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0872 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0345 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9216_0557 [Lactobacillus iners LEAF 2053A-b] MarR family transcriptional regulator [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF9212_0194 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_1153 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0557 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9218_0345 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0872 [Lactobacillus iners LEAF 3008A-a] MarR family transcriptional regulator [Lactobacillus iners ATCC 55195] # 1 65 1 65 65 73 100.0 4e-12 MEEQKQKPFSAKRWHEDASPDQLFGRIKSKKRLERNKREIEKVLRIQKKLFEERERLAKQ QDKQN >gi|311091648|gb|AEKJ01000019.1| GENE 2 904 - 1119 370 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312875505|ref|ZP_07735508.1| ## NR: gi|312875505|ref|ZP_07735508.1| conserved domain protein [Lactobacillus iners LEAF 2053A-b] ISHne1 transposase [Lactobacillus iners ATCC 55195] conserved domain protein [Lactobacillus iners SPIN 1401G] conserved domain protein [Lactobacillus iners LEAF 2053A-b] ISHne1 transposase [Lactobacillus iners ATCC 55195] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 71 1 71 71 92 98.0 1e-17 MAEDVNKLTAKEVGAIIQARYDSEMRQPETEEQRKKARERMAKVNKLSYESLRKQGYYAE AELVGGHNSKR >gi|311091648|gb|AEKJ01000019.1| GENE 3 1094 - 1474 277 126 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0868_0548 NR:ns ## KEGG: HMPREF0868_0548 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 8 76 4 71 75 96 72.0 4e-19 MEDIIAKDDYDVVVFKLLVYFYACLKRVTVFKQAEFDLITKKAGVDERYLLDILRMMQDE GLIEGLAFTKAWGEELILLGNVSDAKITAEGIHYLQDNGRMKKVLAFLIDKADTIIGLVK LVALMQ >gi|311091648|gb|AEKJ01000019.1| GENE 4 1728 - 2033 309 101 aa, chain + ## HITS:1 COG:no KEGG:SAAV_0828 NR:ns ## KEGG: SAAV_0828 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_ED98 # Pathway: not_defined # 5 93 1 86 96 73 46.0 2e-12 MDKLLTINVAGLNYKVVVTEYFKASDDDRNLWGYCDYGDLTIYIRKSLSEERKQQTLIHE LTHAVFSETGFTEQDEETVTRLSSVLYQVLKQNPHIFTFQS >gi|311091648|gb|AEKJ01000019.1| GENE 5 2137 - 2328 248 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEHYIDVKNVVKEPQNHNIKLIVSNRELIARSRVNGFLFCLFPCVQAVKNTMCQFPETLK CVL >gi|311091648|gb|AEKJ01000019.1| GENE 6 2345 - 2656 357 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315653199|ref|ZP_07906123.1| ## NR: gi|315653199|ref|ZP_07906123.1| conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 103 1 103 103 151 99.0 1e-35 MPKDVQQALEEKENGKQVSVNEESNAAETQEQETANTAVEKIDADKIVQPYIVQNKKIFF SEKGLLVIEIYSNIVIADASCVSKQLVLIKKVLTMFSIAGKII >gi|311091648|gb|AEKJ01000019.1| GENE 7 3745 - 4899 1198 384 aa, chain + ## HITS:1 COG:SPy0516 KEGG:ns NR:ns ## COG: SPy0516 COG0438 # Protein_GI_number: 15674620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 378 1 381 444 342 46.0 7e-94 MNIGLFSDTYFPQISGVATSIKTLKEALEQQGHSVFIFTTTDPHVDKNIVEPNIFRVASV PFVSFTDRRVAFRGLFQVAKIANEVKLDIVHTQTEFSMGLIGKYVAYSLKIPSVHTYHTM YEDYLHYVLNGHLLKPYHVKQFTKAYLYHMNGVIAPSRRVEDTLLRYGVKTPIRVIPTGV DISGINAAPVCDVRKQLGLSSSDYVILTLSRIAAEKKINRILDCLAILVDEFPNLKLVIA GDGPDVGPLKDQVLRLNLEKYVIFSGNVDHSNVANFYRMADLFVSASDTETQGLTYIESL SVGTPCVVYNTDYTRNIFDSSSLGSVFDTKQEMYDLIRSYILRTPNKADDSIFQKKLSEI SAETFAKNVAEFYDDVIMQYKRIK >gi|311091648|gb|AEKJ01000019.1| GENE 8 4901 - 5944 1030 347 aa, chain + ## HITS:1 COG:lin2699 KEGG:ns NR:ns ## COG: lin2699 COG0438 # Protein_GI_number: 16801760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Listeria innocua # 1 333 1 334 341 352 53.0 7e-97 MIKINMFSKADTVQGQGVGSAYNELIGLLRKNLSSEFQVTINQYSQSDITHYHTINPTYF INSFSKNRGRKIGYVHFLPETLEGSIKLPSGAKTVLYKYVIDFYKRMDQIVVVNPIFIDK LANYGIDRSKIKYIPNFVSKSVFYEQTDAQKKQFREKVGIPDDKFVIFGDGQVQVRKGVD DFAKLAQANPDIQFIWAGGFSFGKITEGYDRLKKLVANPPKNLLFTGIITRQELVNYLNI ANLFLLPSYDELFPMSVLEAFSCGTPVLLRNLDLYKAIIDGYYMSGNNFDDFNQIIQSVL SDPEKLKRYHTLSLKASDEYSEANLTKVWREFYLEQYNLGKKMGQIK >gi|311091648|gb|AEKJ01000019.1| GENE 9 5944 - 6954 370 336 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 3 324 6 326 357 134 31.0 3e-31 MNKRHIIGILFVLLISCIVICKELSTINIATLIKDANLINVFYCVLIFVTLAFSFLCESF ILVILNYEQNSLIPPFWSFVRVSLVQSLFNAITPMSTGGQPAQIVALKQMGISVGKATSV LLMKFIIYQISVFGIYIFAFVTCFQSILAKFDGIAVFIFIGFILHISSIIFLLFILFAHN FTVKLTKKIGNFLFYLIKSKKLSNWQNNVLNQINNFYVEGEKLRSNKMKLFCCFCLTLLQ LLCFYSVPFFILLALNLNCSWLAVTKINVMNTLFMSIVPIPGAEGGAEFGFQKLFSTFID SKSLLVLALFLWRFATYFLEIILGLIFWTIKPKKHY >gi|311091648|gb|AEKJ01000019.1| GENE 10 7013 - 9082 1570 689 aa, chain + ## HITS:1 COG:BS_yfnI KEGG:ns NR:ns ## COG: BS_yfnI COG1368 # Protein_GI_number: 16077793 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Bacillus subtilis # 4 654 15 653 653 570 48.0 1e-162 MARLKALFNWLTKTKIGYFIILLTFFWLKNYIVYLTKFNLGVVGSTQNFLLLFNPIPAGI ILLGICLFFKGRKAYWLALLVDTILSMWLFANILYYREFSDFLSASIIKTSGSSSDNLGK SIAGILHFSDFFVFLDVAIIAILLIFKIIKIDVRNLKFKISALVELLAIALAGLNLTMAQ KDRSGLLTRTFDNNYIVKYLGLNAFTVYDGIKTVHTSTVMAKANHNDLKSVQKYVQRHYI EPNNEYFGVAKGKNVLVIHLESFQQFLIDYKVDGKEVTPNLNKLYHSKNTLSFKNFFNQV GQGKTSDAEMMLENSIYGLQAGSAMSSYGTTNTFESAPAILRQKDNYTSAVMHGGAGSFW NRDNAYKSFGYDYFFPLSFYKNKKHYYVGYGLKDKIFLSQSVKYIEHLTQPFYLKLITVT NHYPYEIDKKNQSIDKTDTGDKTVDGYVQTAHYLDQAIGELLAYLKKTKLDKNTLLMLYG DHYGISGNHHRASAQLLGKSSFNNFDNLQFQRVPLMFHMNGLKGGIKRTYGGEIDVRPTL FNLLGIKDNDLIQFGHSLLSPDNPQIVAQRNGDFVTPEYSKVEGSYYYTKSGKRIKHLTV EQKRKISLINNIVTSELSLSDRIITGNLLRFYKPDWFTTVKRKKYSYKKSDTMKELKKRE KKRKNSLWYLNNKKTTQSMFKTDAPELDK Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:51:21 2011 Seq name: gi|311091635|gb|AEKJ01000020.1| Lactobacillus iners LEAF 2062A-h1 contig00008, whole genome shotgun sequence Length of sequence - 14987 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 7, operones - 4 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 6849 7068 ## HMPREF0421_20949 hypothetical protein - Prom 6928 - 6987 11.5 2 1 Op 2 . - CDS 7009 - 7500 440 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 7596 - 7655 12.8 + Prom 7567 - 7626 6.8 3 2 Op 1 . + CDS 7651 - 8082 458 ## COG3279 Response regulator of the LytR/AlgR family 4 2 Op 2 . + CDS 8079 - 8525 420 ## LAR_1321 hypothetical protein + Term 8549 - 8597 11.5 + Prom 8602 - 8661 8.7 5 3 Op 1 6/0.000 + CDS 8709 - 9968 1009 ## COG1457 Purine-cytosine permease and related proteins 6 3 Op 2 . + CDS 9980 - 11215 1553 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 11377 - 11429 2.1 - Term 11209 - 11277 5.1 7 4 Tu 1 . - CDS 11287 - 12018 999 ## COG0217 Uncharacterized conserved protein - Prom 12119 - 12178 6.2 - Term 12035 - 12091 -0.8 8 5 Op 1 . - CDS 12201 - 12992 921 ## COG3177 Uncharacterized conserved protein 9 5 Op 2 . - CDS 12973 - 13146 177 ## gi|312872836|ref|ZP_07732899.1| conserved hypothetical protein - Prom 13317 - 13376 7.6 10 6 Tu 1 . - CDS 13523 - 13819 355 ## LJ1234 hypothetical protein - Prom 14034 - 14093 6.3 + Prom 14050 - 14109 4.4 11 7 Tu 1 . + CDS 14131 - 14961 818 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin Predicted protein(s) >gi|311091635|gb|AEKJ01000020.1| GENE 1 3 - 6849 7068 2282 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_20949 NR:ns ## KEGG: HMPREF0421_20949 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 110 861 80 873 2659 258 30.0 3e-66 MVGKNNELNKSRHIFEHINRYSIRKLKVGVASVAIAGCFVLPMGTNTVSATEVKTEETVN KQENKKSATDNKKKDQTSKEKDHQAVTSEIKDKKPEQKTKKDTQIDETSHSNKVPVNPNH LEAKDQSTANDQVTNEKSGKVYNLRFVYTLNDNVVSQLYQPYELTLTERELNKKDFVKYL EVPHLVGYRTYAGTYIKKDGKYVTATDLDEKKTHYIKIDAAYIKEHAKADSADKSGLHYK GIVNVPYTPEQKVYYVRHLVQKFDNPNEFEDVQLPDSVYKVTKTITENGQTKKVALTRNY GTVGTVAYAQPIFIPGYRPETNLLRSALPDSDQPVIFTLRYYRDSYEVKYDTDNGTSIRT KRVYYQQPVTEVKAPTRRGYVFQGWTVSGLSDSEHSDSKVNKDQKFTSIKSMPANGVTFK AHWKAKATAEYTVNVWAQKADPVDYAHPDNIVNYDFVGRVKRTVDTFAKNGDGSVDESKP TTIDEPSIKQEEIEKMAFPDTVESDRKTAAEFGKYYVLNDRFTKVMNHLMVDKKTGKTTL KFTKPDARHQSRAIIRPEGDTVLDLIYDRKPYDLIFAKGDVVAGVDTSTSGVDSGYNTPI VKPDAEGKWVTYWYDNTAQPDFDQNGDFQFDERNIVKMKPRTDGKPLYSPYVVRARYGAS LQYRWPIESEVRMQRREGVDLDTHGDPTRGSDDAIGFLGFVLKNKAEKGKSEYAEYGAYR DTPPYRVTKAFLGGTDSLPNPHLTLYGKPLKSNWRLLTTDLTDLRTDRSKIEPQKVIIKL ETDQSAKKNDDKDRHYVFSLESYSKNDTSNTDYIFNCPLIKGYQVVPEDAHQKAEKVDVD EMNDKLDEIMEEDYETYQKEHPDYEGTFNDYKLLVLSANQRWQYEFYLRHHPEYLSELNP MAADYVAKHPGRHKNDFFNLLISGRLTGDKEQVQKAYEQLEAGFTRYKQLSEDINNYVKE SYEQYKKDWVAKGGDDSDIEPEDPDDPDHLSSGSPVLELPEYKRWVLGNRKLLDKDHPLD EMYEDYKTKHPDFLGSPTDFTFLFEQHASPIYYTKYNSTDKLDDPLNMDAEPYEKNMLLV YRYKRCHYKLKFFGSRDADTALAEEDHPYSENIRNASYNNEVKVVPLKANDPKHNLPYQW EFRGQTITRPTYLPEDYVFKGWALDAGGTQPLIPSGFTKEEQKNLTPIGMPEGGLALYPI WGPSEVKHKVTINYWGNKSYDMELVHDQILHEHEKPEGTDDPFLKDPPHQKGYAFTGWVI EVKGKNGKVQEHPYAFDNPVVEDMTLKAKYVPDVRVTATIHHYLLKPGETIKAYYDLFNK EQDLDKQLAACTDASKKAKLLTEKAELTNKRMAMVDVDAVQTIDNLRPDATYSAQAVYEG PQYFPDTQFDQITVNKDAKKNVAWFVYQVFGQNVYKVQYHDANGKDILPPQTIRTGNLDW DVATAPQIPGYRFNKVSVPDKDKQKDDTHPQGQMTFEVTPEGNGVNKVYNVIFTYDDVRI LKRKDQSQATPAGYQRIYYNTDGNGKLVTTDDKDKQPVANLTYDVVDGLQNGLLPDIKPQ ANPGYRFVRWDPAVPDTLASVKSRTYTAIFEPDISTRKDNPYIISVGDPLPDAKELLAGA KNLPKDVKVAYVEGQGQLNGDFIVPNGAKVPDRTYVDRPVKLLINYDAVDDAGKTSHRTI KLDTTLTVVNPVVAQSRILSADLSDQDQKNSGIDKHTLAVDRYIRTHYKLVTFDAKQNGD FASPDVERSYYVKPDAEVTIPRPGVIAKAGYDFSGWKQGNTSYSKVVKGKFSDKTTIVAD YRAHAMTLKPMILSVGDQAPEAKALVTNSDKLSDAAQFSYSGSVPTTQKVGKQQVTVVNT DGVQESTTIQVIDNIVSNNQFQGLSEAEKAYIKSHYKRIAFSAGQHGQFDPKDETIYYVN PDRVHDLSKLAPHVTAKMGYKQGNGLANTGFSCKLKDVRFDYDTDIAATYQEVDPTTKHL IIRQGMSLPKASEFIESLPQGTDVAYNFGSESAQKYAQDEVGHTKVIPLTLTYKQADKIT RTAHCVAYLTVLPSVIAQGSETAPDCVDYIKKNYHTITFDAGKDGQLDGATTYFVDPDRE VDLTSIQPGVTANTGQQFIGWNHKLKGKFTQNTTFEATYRQAPKPEPCPVCPMPKPQPKK GTFKEIHVYITKDEDGKIISTIQSENKVNGYDGDEYTTEKNEKDGFKFKEIKDLQDNPTY STDGKSTKGKIVGDKNQSITYVYEKVVKKEQPAPTPTPVPTPQPQPKKGTFKENHIYVTK DE >gi|311091635|gb|AEKJ01000020.1| GENE 2 7009 - 7500 440 163 aa, chain - ## HITS:1 COG:CAC2751 KEGG:ns NR:ns ## COG: CAC2751 COG0454 # Protein_GI_number: 15896008 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 2 159 1 164 167 99 33.0 4e-21 MLKIRNAVKEDVPRIMEIYCYAQEFMIKCGNPTQWGHSYPTRELIDRDILNQACKVVYDE TGIHGVVALYEGIDPTYVHIEDGSWLNNDPYITIHRIASDGRVHGVFKTVADYCKNMIDN VKLDTHANNLIMQSLIAKNGFTRCGIIHVDDGSPRIAYQWSKK >gi|311091635|gb|AEKJ01000020.1| GENE 3 7651 - 8082 458 143 aa, chain + ## HITS:1 COG:SA2153 KEGG:ns NR:ns ## COG: SA2153 COG3279 # Protein_GI_number: 15927943 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 1 143 2 147 147 58 27.0 3e-09 MKINLHVDASISEEHAEIWVKQMKPNLESMLQYLNNNQVLWCYYDDQLKPISLNDIFIIQ TDDRKLDISTQNRHYSCRKPLKEVKAILNNDFIEASRSAYFNFKHIDHLVLLNDGAIDVV LTNQERIAISRRKIKNLKERLGL >gi|311091635|gb|AEKJ01000020.1| GENE 4 8079 - 8525 420 148 aa, chain + ## HITS:1 COG:no KEGG:LAR_1321 NR:ns ## KEGG: LAR_1321 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 148 1 148 148 128 47.0 9e-29 MKKYILSAIKGMFLGIAIGLCISLFFDYLNGADTYLPSTPVFTSHFARPLNAVTFSVVLW ALMGLVFSIGALIFQIERWTLLKRTIVNFFVYYIFFTPLAFMAHWFIIDLPHILVFTIMF TLIYVLIWFINAQLIKNDIKQINEKLRK >gi|311091635|gb|AEKJ01000020.1| GENE 5 8709 - 9968 1009 419 aa, chain + ## HITS:1 COG:PA0438 KEGG:ns NR:ns ## COG: PA0438 COG1457 # Protein_GI_number: 15595635 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Pseudomonas aeruginosa # 20 412 4 398 416 316 48.0 5e-86 MKNYFGKISQPDQSRTNEIDQEYAHSRVKGNRKNFWQMLVIMVGFTYFSPSMTAGGHLGL GLNLSQFIIAVILGNLFLAIYTGCLAYIGQHTGMNLDLLARQTFGSKGAHLASFVIGITQ TGWFGVGVAMFAIPVAAFYHLNVYLLVLIMGFLMTLTSVKGIKALSIFGIIAVPLITVLG FYSVYLSFHTSGSLKNMFSNHPLKPLSMAMALSIVIGNFISGGTSTPNFTRFSKNSIGAI SATVIAFFVGNIFMFIFGATGAAAFGKADIFDTLIMQGLAIPAILSLGLNIWSTNNNALY ASGISLANITNNSMKLMTMIAGTIGTLLSIFLFEHFTTYLSLLSSLIPPIGSIIVVDYFM HRSNYKTEECQINYNLSALCPIFIGAFVGCVIKIGIPPINSLIAAIISYLLLQYIKINK >gi|311091635|gb|AEKJ01000020.1| GENE 6 9980 - 11215 1553 411 aa, chain + ## HITS:1 COG:STM3334 KEGG:ns NR:ns ## COG: STM3334 COG0402 # Protein_GI_number: 16766629 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Salmonella typhimurium LT2 # 17 406 22 411 426 489 58.0 1e-138 MLLKNAYIENATKSQDIRIEKETFTAIADHLTPLPNEEVIDLNYKLVLPPFIEPHVHLDS ALTAGQPKWNESGTLFEGIETWALRKKDLTVEDVKNRAIQAIKKQASNGIQFVRSHVDST DPNLTAMRALLEVREELKGTIELQICAFPQEGILSFPNGATLLEECLKMGADVIGGIPHY EFTREYSVQSLHKIIDLALKYNVLVDVHCDEIDDDQSRSLETLACLALESGLKQKVTASH TTAMHSYNNAYVQKLFRLLRLADINFIANPLVNTHLQGRIDTYPKRRGMTRVKELLANGN NVAMGHDDIFDPWYPLGDGNCLDVIHMGLHVGHMMGYKEIMNSYRFSTYNAARVLNISDR YGIEVGKPANLIVLNGKNFYQVLNEHSEVLYSIHKGKVIAKTIPKKKEILF >gi|311091635|gb|AEKJ01000020.1| GENE 7 11287 - 12018 999 243 aa, chain - ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 238 1 238 241 286 62.0 2e-77 MSGHSKWHNIQGRKNAQDAKKGKIFQKLSRELFMAAKSGGPDPSGNPSLRLVMDKARAAN MPKSNIERAIKKAEGNSDEHYDEITYEGYAPGGVAVLVEALTDNKNRTASAVRVAFTRNG GTMGATGSVAYMFDRKGYIVIDRSTTDADEDQVLMDVMDAGGDDLQASDDAFEIYTDPKA FTGVRDALEKAGYKLADAELTMVPQNTTAVPAEKKEQFERLIDALEDDDDVSNVYTAAAD EDE >gi|311091635|gb|AEKJ01000020.1| GENE 8 12201 - 12992 921 263 aa, chain - ## HITS:1 COG:mlr2757 KEGG:ns NR:ns ## COG: mlr2757 COG3177 # Protein_GI_number: 13472455 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 3 239 8 238 263 131 35.0 2e-30 MKFTKLDGLKVQMSKYRPLDQDQLRALEKEIRVEHVWSSNAIEGSKISKFETEAIIERGM TIHGESIGDVLSTIDLNEAYDYMLDLASRKQPLTQTIIRDLNRLSLAKTHPEWGGEYRTL EVHPAKIDYNPYAEPFDIRPDMDALITWANSAQNNLHPVQYAADLHYKFVTIHPFRDGNG RTARLLMNLALTEAGFPVVNIMPDKESRNEYMDILLDSQIKKDPTKFENLVGKYTEETLL KHIRILQLNEENKKDAEQDTNLK >gi|311091635|gb|AEKJ01000020.1| GENE 9 12973 - 13146 177 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872836|ref|ZP_07732899.1| ## NR: gi|312872836|ref|ZP_07732899.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 1 57 1 57 57 63 100.0 6e-09 MLDMMIQLMGFVAQNERYKIRERQMQGIKLLKQIYRIKKREELAKTQEETKNEIYKA >gi|311091635|gb|AEKJ01000020.1| GENE 10 13523 - 13819 355 98 aa, chain - ## HITS:1 COG:no KEGG:LJ1234 NR:ns ## KEGG: LJ1234 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 98 1 98 98 122 71.0 5e-27 MILDTKKLQKEIIQNKKEHGFNTTDIKFELLLLYGEVNELFQAWLKDDDQNIGEELADVA IFLLGIAEILDKDLGVEIIEKMKVNKNRIYRNGKKVNG >gi|311091635|gb|AEKJ01000020.1| GENE 11 14131 - 14961 818 276 aa, chain + ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 20 263 32 283 302 105 25.0 9e-23 MIILLCTACTKENKSNSKISIVSSTNVYADIAKNIVGKYGISSAIIKSSSVDPHDFEPKT SDAKDLKHADIIIANGMDYDGWMKKLAKANGKKITRVGEDLMHLKTDANPHIWYNLKMPQ AYVKYLVKRLSTLDKKHSAYYKNNAQKYLKKIAKIQKIANNIKAVKKPVLVSEPVFDYAL IAAGYKIGNPEFEEAVEKETDPSPKIIKHMNKMIATKKIAFFVNNTQVNSATINSFIKKA KANKIPILKVRETIPNDTTYFDWMLTNYQNLAKISK Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:52:13 2011 Seq name: gi|311091573|gb|AEKJ01000021.1| Lactobacillus iners LEAF 2062A-h1 contig00098, whole genome shotgun sequence Length of sequence - 61247 bp Number of predicted genes - 60, with homology - 60 Number of transcription units - 29, operones - 16 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 334 468 ## gi|312872890|ref|ZP_07732952.1| LPXTG-motif cell wall anchor domain protein + Term 369 - 415 15.1 + Prom 392 - 451 3.8 2 2 Tu 1 . + CDS 576 - 836 357 ## COG0157 Nicotinate-nucleotide pyrophosphorylase + Term 921 - 963 5.2 - Term 1041 - 1098 10.2 3 3 Op 1 3/0.125 - CDS 1106 - 2275 875 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases - Prom 2341 - 2400 1.8 4 3 Op 2 . - CDS 2414 - 2836 464 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases - Prom 3081 - 3140 7.0 - Term 3143 - 3183 2.5 5 4 Tu 1 . - CDS 3230 - 4204 841 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 4307 - 4366 7.1 + Prom 4318 - 4377 9.6 6 5 Op 1 1/0.250 + CDS 4414 - 5703 1890 ## COG0104 Adenylosuccinate synthase 7 5 Op 2 . + CDS 5707 - 7002 1288 ## COG0015 Adenylosuccinate lyase + Term 7034 - 7085 8.0 + Prom 7065 - 7124 9.1 8 6 Op 1 . + CDS 7341 - 8000 442 ## COG1131 ABC-type multidrug transport system, ATPase component 9 6 Op 2 . + CDS 7997 - 8752 522 ## gi|312870708|ref|ZP_07730815.1| putative membrane protein + Term 8821 - 8880 13.1 - Term 8819 - 8857 0.0 10 7 Tu 1 . - CDS 8870 - 10075 530 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 11 8 Op 1 . - CDS 10187 - 10837 495 ## COG0406 Fructose-2,6-bisphosphatase - Prom 10861 - 10920 6.4 12 8 Op 2 9/0.000 - CDS 10931 - 11566 794 ## COG0461 Orotate phosphoribosyltransferase 13 8 Op 3 . - CDS 11568 - 12275 793 ## COG0284 Orotidine-5'-phosphate decarboxylase - Prom 12394 - 12453 9.6 + Prom 12395 - 12454 2.6 14 9 Op 1 . + CDS 12490 - 13764 1394 ## COG0477 Permeases of the major facilitator superfamily 15 9 Op 2 . + CDS 13770 - 14690 1199 ## COG0167 Dihydroorotate dehydrogenase 16 9 Op 3 8/0.000 + CDS 14736 - 15278 794 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase + Term 15368 - 15399 2.5 + Prom 15312 - 15371 2.7 17 9 Op 4 15/0.000 + CDS 15412 - 16353 1201 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 18 9 Op 5 7/0.000 + CDS 16353 - 17630 1414 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 19 9 Op 6 24/0.000 + CDS 17630 - 18712 1104 ## COG0505 Carbamoylphosphate synthase small subunit 20 9 Op 7 . + CDS 18705 - 21872 3217 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Term 21922 - 21978 3.5 - Term 21918 - 21960 4.2 21 10 Tu 1 . - CDS 21995 - 22156 101 ## gi|309807421|ref|ZP_07701384.1| hypothetical protein HMPREF9211_0443 + Prom 21892 - 21951 7.3 22 11 Op 1 . + CDS 22199 - 23119 605 ## RBAM_034800 hypothetical protein 23 11 Op 2 . + CDS 23112 - 23765 559 ## gi|312872891|ref|ZP_07732953.1| hypothetical protein HMPREF9218_1301 24 11 Op 3 . + CDS 23752 - 24288 457 ## gi|309803611|ref|ZP_07697703.1| hypothetical protein HMPREF9214_0038 + Term 24308 - 24350 3.4 - Term 24296 - 24338 4.2 25 12 Tu 1 . - CDS 24344 - 26257 1588 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 26297 - 26356 12.2 + Prom 26320 - 26379 7.9 26 13 Tu 1 . + CDS 26444 - 27073 820 ## COG2344 AT-rich DNA-binding protein + Prom 27083 - 27142 5.9 27 14 Op 1 41/0.000 + CDS 27211 - 27483 390 ## COG0234 Co-chaperonin GroES (HSP10) 28 14 Op 2 . + CDS 27509 - 29143 1579 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 29186 - 29254 11.4 + Prom 29198 - 29257 6.0 29 15 Op 1 6/0.000 + CDS 29288 - 31852 3021 ## COG0249 Mismatch repair ATPase (MutS family) 30 15 Op 2 1/0.250 + CDS 31858 - 33735 1769 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 31 15 Op 3 29/0.000 + CDS 33757 - 34341 611 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 32 15 Op 4 1/0.250 + CDS 34358 - 35362 1048 ## COG2255 Holliday junction resolvasome, helicase subunit + Prom 35377 - 35436 4.3 33 16 Tu 1 . + CDS 35480 - 35779 386 ## COG1862 Preprotein translocase subunit YajC + Term 35793 - 35832 3.6 + Prom 35793 - 35852 7.4 34 17 Op 1 . + CDS 35884 - 37332 1671 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 35 17 Op 2 . + CDS 37333 - 38442 1051 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 36 17 Op 3 . + CDS 38499 - 39455 712 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 37 17 Op 4 1/0.250 + CDS 39442 - 40824 1302 ## COG0513 Superfamily II DNA and RNA helicases + Prom 40888 - 40947 6.4 38 18 Op 1 4/0.125 + CDS 41046 - 43679 3232 ## COG0013 Alanyl-tRNA synthetase 39 18 Op 2 6/0.000 + CDS 43759 - 44016 385 ## COG4472 Uncharacterized protein conserved in bacteria 40 18 Op 3 7/0.000 + CDS 44016 - 44447 549 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 41 18 Op 4 . + CDS 44454 - 44765 392 ## COG3906 Uncharacterized protein conserved in bacteria + Term 44776 - 44804 -0.9 + Prom 44778 - 44837 3.6 42 19 Op 1 3/0.125 + CDS 44873 - 47233 2918 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 47241 - 47300 2.1 43 19 Op 2 . + CDS 47330 - 47641 494 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 47679 - 47727 7.1 - Term 47667 - 47715 0.3 44 20 Tu 1 . - CDS 47768 - 48166 471 ## LGAS_0428 hydrocarbon binding protein - Prom 48190 - 48249 10.1 + Prom 48154 - 48213 7.0 45 21 Op 1 3/0.125 + CDS 48262 - 49047 1058 ## COG0796 Glutamate racemase 46 21 Op 2 . + CDS 49065 - 49685 414 ## PROTEIN SUPPORTED gi|24114209|ref|NP_708719.1| putative deoxyribonucleotide triphosphate pyrophosphatase + Term 49802 - 49846 -0.9 47 22 Tu 1 . - CDS 49711 - 50556 699 ## COG0668 Small-conductance mechanosensitive channel - Prom 50582 - 50641 8.3 + Prom 50593 - 50652 8.3 48 23 Op 1 . + CDS 50681 - 51118 538 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 49 23 Op 2 . + CDS 51133 - 51462 499 ## FI9785_505 hypothetical protein + Term 51465 - 51519 12.6 - Term 51459 - 51500 -0.8 50 24 Tu 1 . - CDS 51519 - 52625 1533 ## COG0006 Xaa-Pro aminopeptidase - Prom 52666 - 52725 4.2 + Prom 52561 - 52620 7.6 51 25 Tu 1 . + CDS 52774 - 53775 1124 ## COG1609 Transcriptional regulators + Term 53776 - 53820 12.1 - Term 53763 - 53807 12.1 52 26 Op 1 . - CDS 53855 - 55252 1605 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 53 26 Op 2 . - CDS 55267 - 56634 918 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 56691 - 56750 10.5 + Prom 56659 - 56718 6.8 54 27 Op 1 . + CDS 56742 - 57074 446 ## LCRIS_00432 hypothetical protein 55 27 Op 2 1/0.250 + CDS 57081 - 57620 502 ## COG4470 Uncharacterized protein conserved in bacteria 56 27 Op 3 3/0.125 + CDS 57623 - 58402 931 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 57 27 Op 4 . + CDS 58402 - 59010 377 ## COG4478 Predicted membrane protein + Term 59123 - 59157 -0.8 + Prom 59164 - 59223 9.5 58 28 Tu 1 . + CDS 59243 - 59428 302 ## gi|309805299|ref|ZP_07699350.1| hypothetical protein HMPREF9213_0640 + Term 59484 - 59547 5.1 - Term 59472 - 59533 8.5 59 29 Op 1 . - CDS 59558 - 60202 580 ## COG0586 Uncharacterized membrane-associated protein 60 29 Op 2 . - CDS 60230 - 61177 819 ## COG0492 Thioredoxin reductase Predicted protein(s) >gi|311091573|gb|AEKJ01000021.1| GENE 1 2 - 334 468 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312872890|ref|ZP_07732952.1| ## NR: gi|312872890|ref|ZP_07732952.1| LPXTG-motif cell wall anchor domain protein [Lactobacillus iners LEAF 2062A-h1] LPXTG-motif cell wall anchor domain protein [Lactobacillus iners LEAF 2062A-h1] # 1 110 1 110 110 176 100.0 6e-43 SKTVKVVGVIYRHGDPLVNEKPMFNYQTENPDYTVPNGEAPLGIHQTSQQKQTTDNLSQL EANQRVKAASRKKVLPNTGSHSSQTWGGWILTLGGLITLLAGKKRKKEDE >gi|311091573|gb|AEKJ01000021.1| GENE 2 576 - 836 357 86 aa, chain + ## HITS:1 COG:CAC1023 KEGG:ns NR:ns ## COG: CAC1023 COG0157 # Protein_GI_number: 15894310 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinate-nucleotide pyrophosphorylase # Organism: Clostridium acetobutylicum # 6 86 187 267 279 80 53.0 5e-16 MTYYKIKKYEVEVETLEMVKEAIHGQADIIMLDNMSHEAMAEALKWIDGRAIVEASGNFT LDNISEHKDLPFDYISSGEITHSGDV >gi|311091573|gb|AEKJ01000021.1| GENE 3 1106 - 2275 875 389 aa, chain - ## HITS:1 COG:XF2725 KEGG:ns NR:ns ## COG: XF2725 COG0610 # Protein_GI_number: 15839314 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 1 349 668 1006 1007 340 53.0 3e-93 MKNKELDLLIVVNMFLTGFDATTLNTLWVDKNLKMHGLIQAFSRTNRILNSIKTFGNIVC FRNLQKRVDTAISLFGDKNAGGIVLMKGFKDYYYGYEGIDGKQMPGYADMMEELKEKFPL SEPQIVGEQNQKDFISLFGAILRMRNLLSSFDEFVGKELITEYDMRDYLSRYQDLHDEWK RKREQGESTDIIDDIVFEVELIKQIEINIDYILMLVKKYHDTHCEDNEMLITITKAIDAS PELRSKKELIENFIAGINDVEDVMKEWHDYVAEKREEELVQIIKEENLKEPETRKFLENA FRDGEIKTAGTDIDKLMPPVSRFGGRNRAVKKQGVIDKLKLFFEKFFGVGGSFTTEKPKF FNYANAMAQQSVLMVAEDSATHGTKKDAE >gi|311091573|gb|AEKJ01000021.1| GENE 4 2414 - 2836 464 140 aa, chain - ## HITS:1 COG:XF2725 KEGG:ns NR:ns ## COG: XF2725 COG0610 # Protein_GI_number: 15839314 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 8 130 514 615 1007 72 35.0 2e-13 MVDTKDEDIDDEMVWDINREKAMMAPQSIKLVTKYILEHFDQKTYRGYKTYAYNTLMNVA KVASSDKGAVEEIKKKQRVSGFNSIFAVASVPMAKLYYQEFKKQMETDPTKKLRIATIYS YGANEAEYDEGSSGILDEEN >gi|311091573|gb|AEKJ01000021.1| GENE 5 3230 - 4204 841 324 aa, chain - ## HITS:1 COG:SA1172 KEGG:ns NR:ns ## COG: SA1172 COG0516 # Protein_GI_number: 15926918 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Staphylococcus aureus N315 # 1 324 1 324 325 497 71.0 1e-140 MEAFDYDDIQLVPNKCIIKSRKEADTSIKFGKRTFKLPVVPANMESVINEPLAVWLAEND YYYVMHRFQPEKRADFIKMMHDKGLFASISVGIKDEEYKFIDQLANEKLVPEYITIDVAH GHSDYVIKMIKYIKEKLPESFLTAGNIATPEAVRELENAGADATKVGIGPGRACITKLKT GFGTGGWQLAALRMCSKAARKPLIADGGIRHNGDIAKSVRFGASMVMIGSLFAGHLESPG NIITIDNKTYKQYWGSASAVQKGAYNNVEGKQLLVPYRGSIKDTLKEMQEDLQSAISYAG GKDLHSIRVVDYVIVKSSIMNGDK >gi|311091573|gb|AEKJ01000021.1| GENE 6 4414 - 5703 1890 429 aa, chain + ## HITS:1 COG:SP0019 KEGG:ns NR:ns ## COG: SP0019 COG0104 # Protein_GI_number: 15899967 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 427 1 427 428 605 67.0 1e-173 MTVVAVVGSQWGDEGKGKMTDYLSQSADMTVRSNGGNNAGHTIAFGGKTFKMRLIPSGIF EAKKETVIGNGVVINPEVLLDEIKYLEDNGINTDKLAISNRAHIVMPYDILQDVYQEEAK GANKVGTTKNGIGPTYMDKASRIGIRMCDLLEKDTFEEKLRFNLNEKNALFVNVYGKEAL KFEDIFEKYWKFGQELKKYVTDTSVIVNDAIDNDDKVLFEGAQGVMLDIDQGTYPFVTSS NTVTGGITTGIGIGPSKVDTVIGICKAYTTRVGAGPFPTELLDETGNYIRETGHEYGTVT GRPRRVGWFDSVALRHSKRVAGIDALSLNLLDVFSGLKTVKIAVAYELDGQKIDYYPASL KELERCKPIYEELPGWDEDITKVTKLEDLPENARHFLSRVSELVGVPLVTVSVGPDREQT IVLKNPWEM >gi|311091573|gb|AEKJ01000021.1| GENE 7 5707 - 7002 1288 431 aa, chain + ## HITS:1 COG:SPy0036 KEGG:ns NR:ns ## COG: SPy0036 COG0015 # Protein_GI_number: 15674278 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Streptococcus pyogenes M1 GAS # 1 430 1 430 430 590 68.0 1e-168 MLDRYTRPEMGKIWTDENRYAAWLKVEIAATNAWSELGEVPVADAQKIAKKASFTAERVA EIEAITHHDVVAFTRAVSESLGEERKWVHFGLTSTDVVDTAQGVLLKEANDILRSDLAHL KNTIAKKALKYKDTVMMGRTHGVHAEPTTFGLKLGRWYAEIIRDIDRFEHAAAGVESGKI SGAVGTFANVPPEVETSVLHQLGLNQQPITSQVLPRDLHAEYLAMLALIATSIENWATEI RSLQRSEIHEVEEHFRAGQKGSSAMPHKRNPIGSENLCGMARVIRGHMLTAYENVSLWHE RDISHSSAERIILPDTTIAIDYMLNRFDKILENLDVFPETMLKNMDRTYGLIYSQRLLLK LIDEAGLSREKAYDMVQKLTARSWNEQIQFRQLVDESEITKYLSKSDIDDAFDYHYHLKH VDDIFKKLGIL >gi|311091573|gb|AEKJ01000021.1| GENE 8 7341 - 8000 442 219 aa, chain + ## HITS:1 COG:SPy1286 KEGG:ns NR:ns ## COG: SPy1286 COG1131 # Protein_GI_number: 15675239 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 3 198 7 211 232 141 39.0 1e-33 MLLKNITVKYGRKVALDNISLTLRNDGKIVGILGDNGSGKTTLVNLILKNINKFKGQREI EGSFSYMPDRYFLYESMTIKESIDLFKSVYSDFDEQRMYKILQKFSISPQLKLHDCSKGM HEQVHLALVFSRNTDFYVLDEPLSATDPIKRRYFMDIIQNYRRKNSTVLMVTHLIRDLGD MLEDVIFIKDGHILSHNSRAEILAVDKTLEDAYIRRIGQ >gi|311091573|gb|AEKJ01000021.1| GENE 9 7997 - 8752 522 251 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312870708|ref|ZP_07730815.1| ## NR: gi|312870708|ref|ZP_07730815.1| putative membrane protein [Lactobacillus iners LEAF 3008A-a] putative membrane protein [Lactobacillus iners LEAF 3008A-a] # 1 251 1 251 251 391 98.0 1e-107 MSRYLLIRLKKISLMFLFPIVVELGILIYENVVKKEKANISMYNGLWYVATVAIIVFVTV YQIIKNYYLGHDSLWQIFPYSKEGLEFIDIFFYILGTIIYGCTYQYAQATASNQKFYISM YIPEKLVSLIAFYLLIMAMCVLFKNVQCPKIGEGCIIISSLIIIISQISIFWKLNQKVVN HFLLGVSDACETKHLIYINTLPYVFFGVTKRQIATLINTSYLLNGCLIILCLLFILISIK FRRMNYIDLVG >gi|311091573|gb|AEKJ01000021.1| GENE 10 8870 - 10075 530 401 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 13 384 44 413 425 208 36 5e-53 MDELAKLAEANQMEVVGRSWQNLETIVTGTYFGLGKINEIKHLAKELHATVIIINDELTP TQIRNLEKMTKLSILDRTELILEIFSNRVRTKQAKLQVQLARLQYELPRLHPSENRLDQQ RGSGGGFNNRGAGETKLELNRRTIQQQISNIKKDLKKINQQEIIKATQRNNSFLPQVALV GYTNSGKSTTLNNLLNEYSKSADKKQVFTKDMLFATLDTHVRRIDLENKLSFIISDTVGF VSNLPHNLIESFKATLQEVRDADLIINVVDASDPNILQMIQTTTKVLDELQIGDVPIITA FNKVDKTDRSYPQIEGNGNILYSAKDPESIRLLAKLIQKKIFSNLQVVELFLPLQMGDKL NYLHTHGQVIEEKYQDNGIYIKIKICKKIANKFAKYNYKSK >gi|311091573|gb|AEKJ01000021.1| GENE 11 10187 - 10837 495 216 aa, chain - ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 3 180 6 185 224 126 38.0 4e-29 MKTIYLVRHGQTFINRYDKMQGWCDTPLTNQGIKEAENTGVILKDIPFDIAFSSDLKRAC DTCDYIISENCNRHELQHISSPFFREQFYGYFEGMNSDEAYRMIGGPHGYPTREKLLSAI DLDTVKDYMKEADPYHDAESASEYWQRLNQGFSLLNQLDDVKNILLVTHGFTIRSIVNRF AKGKYNLLHGPQNGSITIMKINDKEIKITDYNKLEL >gi|311091573|gb|AEKJ01000021.1| GENE 12 10931 - 11566 794 211 aa, chain - ## HITS:1 COG:L80411 KEGG:ns NR:ns ## COG: L80411 COG0461 # Protein_GI_number: 15673050 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Lactococcus lactis # 3 206 4 207 209 207 50.0 1e-53 MYTKEIIQGLIQNKIVTISPDKPFTYASGMLSPIYTDFRLTISYPKLWNMICDDLATLIK EKYPQVTVIGGVATAGIPHAAIVAQKLGLPMIYVRPKPKDHGKGRQIEGLFTAQDKIVLI DDLITTGGSVINAVKAAQKSGADVIGVSSIFTYYLPDAKDNFAKINIPFAPLLSYPELLK QEKETGHVTDKEYMLLKNWHDDPWAWGKQFN >gi|311091573|gb|AEKJ01000021.1| GENE 13 11568 - 12275 793 235 aa, chain - ## HITS:1 COG:L181692 KEGG:ns NR:ns ## COG: L181692 COG0284 # Protein_GI_number: 15673327 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Lactococcus lactis # 2 235 4 236 237 211 46.0 1e-54 MNKPVIVALDVEDKTSLDRLLNKLGDPKDITVKIGMELFYQFGTEPVKELVAKGYSIFLD LKLHDIPNTVYNGMKQIAKLGIQYTTIHALGGSEMIKKAHEGLIAGTPTGKSLPKLLAVT ELTSISDDSLANEQNCKLTMKDQVISLAKMAKKYGADGVICSPLEVEKLRTEVGEDFLYV TPGIRPATDQKFDQSRIATPAQAKAFGSSAIVVGRPITLAKDPKAAYQKIVKEFN >gi|311091573|gb|AEKJ01000021.1| GENE 14 12490 - 13764 1394 424 aa, chain + ## HITS:1 COG:SPy1340 KEGG:ns NR:ns ## COG: SPy1340 COG0477 # Protein_GI_number: 15675278 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 15 414 1 398 406 312 46.0 7e-85 MTVSIHFWRLNMNNISKYTQELSRDQKLVISSTASGFALENMDVLFLSFAMSSMIKDLHL SGGAAGLISSITTLGMLLGGIIFGILGDKIGRVKTFSHTVVIFAIATGLMAFTNDINHIY MLRFLAGIGAGGEYGVGIALIAENFSHDRIGKMTSIAAIGGQIGAVMAAVVAAVIIPTLG WHKLFLVGVLPVVLTYFIRKHLHESKQFIEAKKHAKGSFFFEVIKKMFSTPRLMWQSIGL TIMMIVQISGYFGLMNWLPTIVQKQMHLSVSGSSLWMVSTIIGMSIGMMTFGTIFDYFGP RRAFTIFLLGSGVMVYMLILAHNMFALIIIGAIVGFFSNGMFGGYGAVISCLYPTEIRST ANNIIVNVGRAIGGFSSVVIGILMDYYNLMVVMGFLSALYLLSFIIMVSLPGLKELGLKK VKKA >gi|311091573|gb|AEKJ01000021.1| GENE 15 13770 - 14690 1199 306 aa, chain + ## HITS:1 COG:BH2534 KEGG:ns NR:ns ## COG: BH2534 COG0167 # Protein_GI_number: 15615097 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Bacillus halodurans # 1 302 1 299 305 310 52.0 3e-84 MSKLNVKLPGLNLKNPIMPASGTFGFGDVPQAKKYDLNEMGAMVFKTTTLHARIGNPQPQ IAVMKNGVLNSVGLTNPGVDKVISDKIAPFKEQYPQLPLIASVGGSQISDYITISKKLSD SGLLNALEINVSCPNVAAGGMHLGTDPVVVEKLTSEIKKVVNIPVYIKLTPNVTNIVEIA QAAERGGADGLSMINTLLGLGIDIKTHKATLGNGFGGWSGSAIKPVAVRMVAQVHQAVKL PIIGMGGIETAEDIVEFMLAGASAVAVGTAHFKDGLAIPHLVADLETLLNELKVDDINEL IGQYKF >gi|311091573|gb|AEKJ01000021.1| GENE 16 14736 - 15278 794 180 aa, chain + ## HITS:1 COG:lin1954 KEGG:ns NR:ns ## COG: lin1954 COG2065 # Protein_GI_number: 16801020 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Listeria innocua # 5 179 7 183 183 195 61.0 4e-50 MIKELFDKIAIKRALTRISYEIIEKNKGTENLVLFGIKTRGVYLAKRIAKRIEELEGVKI PVGVLDITLYRDDRQDVSLSNEAVVNSTECNTDVNKKNVILIDDVLYTGRTIRAAMDALI HMGRPNSISLAVLVDRGHRELPIRADYVGKNIPTALNEKVSVNVEEIDNKDSIELEKLES >gi|311091573|gb|AEKJ01000021.1| GENE 17 15412 - 16353 1201 313 aa, chain + ## HITS:1 COG:SPy0832 KEGG:ns NR:ns ## COG: SPy0832 COG0540 # Protein_GI_number: 15674868 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pyogenes M1 GAS # 4 307 8 307 311 335 52.0 9e-92 MQPVKLSHFTTVEDLTTEQVFNLIKRAEAFKNGAKPTPLTKPVYVTNMFFENSSRTHTSF EMAERKLGLTVIPFDPAHSSVKKGETLYDTSLIMNAIGIDLEVIRHSKNRYYDSLINLSE HQHLDMGIINAGDGSGQHPSQCMLDMMTIYEHFKHFDNLKVVIVGDIVNSRVARSDMEIL KKLGAEIYFSGPSCWYDHQFDQYGKYLPLDSLLEKMDVVMLLRVQHERHMEEDKDFSATD YHQKYGIDQKRYECLKENAMIMHPGPINHDVELAGNLVEATKCYFFRQMQNGVFMRMAMI EAVMYGRKLGGLA >gi|311091573|gb|AEKJ01000021.1| GENE 18 16353 - 17630 1414 425 aa, chain + ## HITS:1 COG:BH2538 KEGG:ns NR:ns ## COG: BH2538 COG0044 # Protein_GI_number: 15615101 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Bacillus halodurans # 1 425 1 427 428 411 50.0 1e-114 MSWLIKGGLVFYNDILSLTDILISEGKIAAIGHNLTADHEIDATGLLVTPGLVDLHVHYR DPGLTYKETIATGSKAAAHGGFTTVGAMPNVKPVPNTAALLSKMVVENQKKGVVHILQYA PLTKDENSDEILDYQALKEAGAFALSNDGFGVQSAETMYKAMQKAAVNNLIVAAHAQDDS LFNKGVINEGDKAEKFNLPAISELAETTQIARDLLLAAKTGVHYHVCHVSTKTSLDLIRI AKKRGINVTCEAAPHHILLSQDDILTDDPYYKMNPPLRSKDDQMALIEGLLDGTVDFIAT DHAPHAAYEKEGSMLNAAFGITGSETCFSMLYTKLVKTGIVRLEQLLTWLTVRPADLFNL KHCGRLVVGEPADIAIFDLNQPHQLQISEYQSKGKNTPFTGNIVYGTTAYTIVDGNIVYQ RKEVA >gi|311091573|gb|AEKJ01000021.1| GENE 19 17630 - 18712 1104 360 aa, chain + ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 2 352 4 353 360 448 58.0 1e-126 MRYLILEDGTFYAGEGFGANIETIGEVVFTTGMTGYQEAISDQSYANQILVFTNPLIGNY GITLSDYESLAPQIKGVICHQLARKPDNWRMQDTLPNFLKHINVPAISGIDTRQLVKKIR MHGTLRGAICDSIDHLDEVVEKLKNSNVTANIISQVSTKNSYPIPGSKRNIVVVDFGIKH SILKELTKRGCNCIVKPYNVSAAEIMNLNPDGVLLSNGPGDPEEMTDAAKMVREIEKHYP LMGICMGHQIFALANGAKTYKMKFGHRGFNHPVKEIATGNIAFTSQNHGYAVDPESVDKE NLFVTHVEINDGTVEGLRHKKYDAFSVQFHPDATPGPHDAVSLFDDFIQLIDQRKERNNA >gi|311091573|gb|AEKJ01000021.1| GENE 20 18705 - 21872 3217 1055 aa, chain + ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1054 1 1058 1058 1322 62.0 0 MPKRKDIHKIMVIGSGPIIIGQAAEFDYSGTQACLALREEGYEVILVNSNPATIMTDTEI ADKVYLEPLTVEALTRIIYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKL KSIEQAEDREEFKKLCKQLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGG ICNNRKELATVVARGLDLSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIICCMENFDPV GIHTGDSIVFSPSQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN PRVSRSSALASKATGYPIAKMAAKIAVGMTLDEIINPVTGTTYAEFEPALDYVVCKIPRW PFDKFAQADRKLGTQMKATGEVMAIGRTAEEALHKAIRSLDIDELDLFSPEAHNADDNLL EKKLAYAQDDRLFYLAEAIRRNYSMKDIHELTKINYYFLDIVAHLVEMEKTIQDHPQDIA TLREAKKYGFSDLTIAHLWNITENEVRQFRKQNHIIPVYKMVDTCAAEFESQTPYFYSTY DEENESTDFDSKSVIVLGSGPIRIGQGVEFDYATVHCVKALQKLGYKAIVINSNPETVST DFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGAQTAINLAAGLKEHGVKILGTDVED INRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDAAIKIGYPVLVRPSYVLGGKAMEIV YNEAELEEYLDNNAYITNDHPILVDDYLDGKECDVDAISDGVDILIPGIMEHVEHAGVHS GDSMAVYPPQSFLDDIQQKICEVTRKLAIALKCQGIMNIQFIVRDNDVYVIEVNPRASRT VPFLSKITGIEMVQVATKIIMGKSLAEQGYKPGLAPASQMINVKAPVFSFNKLPGVDPYL GPEMKSTGEVMGSDYTYAKALYKAFAGAKINLTANMSILLATDLKEKDRIVAIAKKFNQT GARVFVLPEVAEVLQDMGVRFNLVESEETLMQMLKEKKFNLVINNMSRDSEPKSFGFKLR QMAISQNISLITALDTVDAILIAISNDTLTTKPLA >gi|311091573|gb|AEKJ01000021.1| GENE 21 21995 - 22156 101 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309807421|ref|ZP_07701384.1| ## NR: gi|309807421|ref|ZP_07701384.1| hypothetical protein HMPREF9211_0443 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9211_0443 [Lactobacillus iners LactinV 01V1-a] # 1 49 1 49 49 80 93.0 5e-14 MNDILKNNINVLSCLDDSKYIFIWENFIFTQPIDPIDNGHSLKKKKFSFKQII >gi|311091573|gb|AEKJ01000021.1| GENE 22 22199 - 23119 605 306 aa, chain + ## HITS:1 COG:no KEGG:RBAM_034800 NR:ns ## KEGG: RBAM_034800 # Name: not_defined # Def: hypothetical protein # Organism: B.amyloliquefaciens # Pathway: not_defined # 14 303 14 310 319 139 31.0 1e-31 MNVFMLLSYYRKETMESIKLYKKSAKWLFDNLEYFDPRNESKIADNKYKIKAFMELLFVQ NMFYPQKLFSSSEQHIINNFIINLINNMSFYNYAVRDPDMISVLPTIIEFLLNQNQQVYN IEKIEQLIEYSHGLSIKKTAFRRLDLAYSFKKAGLKNKFDSLNAIYPLTTLGKNGNNFYY ADIDVYSITHTIFYMTDMGRKATPEISTLDNLNLLLRLIQLYILEDNMDILSELLICIKF LHYDLSKENIKFILDEAVAVLKKHQKQDGLMLGPGVSLSKRDTREQIFRLNYHTTMVSLG ALYLYE >gi|311091573|gb|AEKJ01000021.1| GENE 23 23112 - 23765 559 217 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312872891|ref|ZP_07732953.1| ## NR: gi|312872891|ref|ZP_07732953.1| hypothetical protein HMPREF9218_1301 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_1301 [Lactobacillus iners LEAF 2062A-h1] # 1 217 1 217 217 370 100.0 1e-101 MNRYEHIIIKKLNESEIDEELLNSITNMIDFYFVSKVANSSIEKLIFNIIYSIVGGQDNI RAVINTNPFKLDKFIMWANFLVTFFNDQDFSQIFYNEVQALKKQNFISEFELSDDFLEKV KENCISTNDENRITISKKDISLINFGPLLYEGNYNIHNLKLSDSDKKILLYYYYCISDWS NVLYLSLSLKCKLKQKINLKDCNIEQILGVWLLNEQK >gi|311091573|gb|AEKJ01000021.1| GENE 24 23752 - 24288 457 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309803611|ref|ZP_07697703.1| ## NR: gi|309803611|ref|ZP_07697703.1| hypothetical protein HMPREF9214_0038 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9218_1302 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF0523_0256 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9214_0038 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9218_1302 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF0523_0256 [Lactobacillus iners UPII 60-B] # 1 178 1 178 178 310 100.0 3e-83 MNKNKDVTVEVVHIKNWLNKHENVLDKEDLQILNILNKTSFSEFQDNLGYKLNHRKLEDI IIDNSLSDEDKVSYIVALKDNVEGINQFILEGYLLFLGKRYEIKLATIVAYVLLEKYGIS KLLTQFIQFLILNTDFDGSVGIINPLRNTISDDIYPIWKYGNTYFSYLFLANVIKHDL >gi|311091573|gb|AEKJ01000021.1| GENE 25 24344 - 26257 1588 637 aa, chain - ## HITS:1 COG:L73239 KEGG:ns NR:ns ## COG: L73239 COG0488 # Protein_GI_number: 15673044 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 636 1 635 635 528 45.0 1e-149 MIIAQAKNLEQHFGINQIFNDVDFSISDNARIGLVGPNGAGKTTLLKIMTGQQEPSGGNF TINKDIIVGYIAQENGLNENNSIWEEMLTVFASLVDKSHKIEQLQIDISNDPENQDLLKQ YDQLSYSFEQAGGFTYPAEIKSVLNGFKFFKDSWHKKISTLSGGEKTRLAFVKLLLKKPP LLLLDEPTNHLDLDTLEWLEGFLKNYKGAILTVSHDQYFLDNLTNEIFELNFGKLTTFKG NYTQYVQERELINRQQEAAFEKQQEQIKRDEEFIQKNIVRASTTKRAQSRQKRLDKIERI TLPQHKQKVRINFNAERQSGKEVLILKDVTIGYPDKIMVKNINFQVNKGDRIAIIGPNGI GKSTLLKTLMHKLEPKAGTIKYGAGLDIGYYDQELQSLDFKQTVLDTIWNRHKTMPESEV RSILASFLFNAKDIEKTVAQLSGGQRARLTLTVLSMEKDNFLLMDEPTNHLDIEAKEVLE QALDNYDGTLLFVSHDRYFINELANKIIVINNGTAKLYNGNYHYYLDELTKQNAIEASKQ EEIIANEDNSGKLSYAEQKERNSQKRKLERDVQNAEKKIAELEEKEKDMQLKMADPIISA SFEKLGPLQEELSRIQSELEKANETWEEAMLNLDEFE >gi|311091573|gb|AEKJ01000021.1| GENE 26 26444 - 27073 820 209 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 2 207 4 209 215 244 57.0 1e-64 MDESNIPGATAKRLPLYYRYLIFLDDAGKKRVSSAELAEAVQVDSVSIRRDFSYFGALGK PGYGYEVKGLLSFLKKILNQDILTNVALVGVGHMGHALLNYNFKRTNNIRISAAFDINKK ITGRILCGVPVYDINEMHQQLQDQQINIAILCVPQDVAQKTADEMITAGIKGIMNFTPIR LIVPHGVRVQNVDLATELQTLNYFLNSRK >gi|311091573|gb|AEKJ01000021.1| GENE 27 27211 - 27483 390 90 aa, chain + ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 90 5 94 94 89 54.0 1e-18 MGDRVIVKVKDEEEKNVGGIVLASNAKEKPQTGEVVAVGQGARDANGNLIPMTVAKGTEV FFDKYSGTNLKYEGQEYLVLHEKDILAYIK >gi|311091573|gb|AEKJ01000021.1| GENE 28 27509 - 29143 1579 544 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 543 3 541 547 612 57 1e-174 MAKDIKFSEDARSSLLRGVDKLANTVKTTLGPKGRNVVLEKSYGAPDITNDGVTIAKNIE LKDHFENLGAKLVAEVAQKTNDIAGDGTTTATVLAQAIVREGMKNVTAGANPVGIRRGIE IATKAAVAELHKISHEVSSKAEIAQVASVSSASTEVGELIADAMERVGHDGVITIEESKG IDTELSVVEGMQFDRGYLSQYMVTDNDKMEADLENPYILITDKKISNIQDILPLLQEIVQ QGKSLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVIS SDLGLELKDTKIEQLGTAGRITITKDSTTIVEGAGSKDAISERTEQIKKQIADTTSDFDR EKLQERLAKLSGGVAVIKVGAATETELKEKKYRIEDALNSTRAAVEEGYVAGGGTALVDV MKAIDNNVKADTDDAKTGVKIVLAALSAPVRQIAENAGKDGSVILDHLLHADLEIGYNAA TDKWENMVTAGIIDPTKVTRSALQNAASIAALLLTTEAVVADEPEENKAQCPCPTNPGVP GMGM >gi|311091573|gb|AEKJ01000021.1| GENE 29 29288 - 31852 3021 854 aa, chain + ## HITS:1 COG:BS_mutS KEGG:ns NR:ns ## COG: BS_mutS COG0249 # Protein_GI_number: 16078767 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus subtilis # 6 850 5 857 858 828 51.0 0 MAEKITPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKP IPMAGVPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGTVINDNPD QAKESNYLTSLCSSSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGEALT SDKQIFLKKAGITLSQPVKLSKEHAEVSYVTQQLHNQLEIAATKQLLAYLLATQKRSLAH LQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTSTAMGGRLLKSWIER PLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVALGSANARELLQLAD SLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIVENPPLSTKEGGIIKAGVS SQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGYYIEVTNSYKDKVPLDRY MRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYELFTNLREDIKKYIPALQKLAKQL SSLDVLATFSLLSEQNNYVCPQFSQDSSAINIVNGRHPVVEKVMSDEEYIPNDVKMDEQT NIFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISGK STFMVEMSEANIALNNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLR EATHMLKQLEKHSDNQAAFSDEQLDLFGSSDQHKMSDEEQDVLTQIKNLYLNEITPLQVM QLVANWQDELKNKE >gi|311091573|gb|AEKJ01000021.1| GENE 30 31858 - 33735 1769 625 aa, chain + ## HITS:1 COG:BH2368 KEGG:ns NR:ns ## COG: BH2368 COG0323 # Protein_GI_number: 15614931 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Bacillus halodurans # 1 625 1 635 637 414 39.0 1e-115 MTKIHKLSSKLTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIVVQDN GSGIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNTGGVNG IHAIFEDGNKVKQEAIASPQGTKIVVRDLFYNTPARLKYLKSERTEIMKIVDIVNRLALG YPQVSFELTNQQKQLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISRAD ETRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNVHP TKQEVRLSKESELARLIVRTIDQVLGATEHEIASLDNATESKQTKLDQLEFNLNEAVVDT SRIPVEFSMPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDENVQAQTALSPFSA SQLSSEVTTSSEQILVNRLPQLQCLGQMHEYLLATADNDLYIVDQVAADNRLAFDKLLLQ MQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLWLEN CDQLQIKAVIDLILAHINAPIDKIRIELAKKIVATKHIRRKSLNSLEMVEMLTSLSNSSN PYHDPFGKIIIAKISENDLRKLFQK >gi|311091573|gb|AEKJ01000021.1| GENE 31 33757 - 34341 611 194 aa, chain + ## HITS:1 COG:L0266 KEGG:ns NR:ns ## COG: L0266 COG0632 # Protein_GI_number: 15674189 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Lactococcus lactis # 1 193 1 197 197 177 52.0 1e-44 MFEYLQGKVTIINPAYIVLDVVGVGYKLYTPNPYQFIENKQYCIFVEQVVRENAITLYGF ATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKVASQ IILDLKGKLDVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEKIKPKLEKLPNQSA DLYIKEALKLLLKQ >gi|311091573|gb|AEKJ01000021.1| GENE 32 34358 - 35362 1048 334 aa, chain + ## HITS:1 COG:SPy0038 KEGG:ns NR:ns ## COG: SPy0038 COG2255 # Protein_GI_number: 15674280 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pyogenes M1 GAS # 15 328 13 326 332 411 64.0 1e-115 MTKDNLFSGESTPVEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR >gi|311091573|gb|AEKJ01000021.1| GENE 33 35480 - 35779 386 99 aa, chain + ## HITS:1 COG:BS_yrbF KEGG:ns NR:ns ## COG: BS_yrbF COG1862 # Protein_GI_number: 16079823 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Bacillus subtilis # 2 75 12 85 89 69 41.0 1e-12 MVVIMFGFMYFAMIRPQKKQQQVRMKMLSELKKGDKVILLDGMHCKIDTINGDDTIVVDA DGIFLTFSRSAIRQILPDDVEANKPVATNENVETKDEEK >gi|311091573|gb|AEKJ01000021.1| GENE 34 35884 - 37332 1671 482 aa, chain + ## HITS:1 COG:SP1243 KEGG:ns NR:ns ## COG: SP1243 COG0364 # Protein_GI_number: 15901104 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 7 482 6 483 495 421 44.0 1e-117 MKNIPNVMIIFGGSGDLAHRKLYPALFNLYRKGLIADNFAVIATARRPWSHDFLRGQVKN AVNETCEQIDAADLDRFATHFYYQSHDVTHVDHYIALKQLAQKLDEKYDCHGNRIFYMAM APSFFGTIATHINDQKLLGTGFNRLIVEKPFGRDYETAEKLNQEIGASFDEKSVYRIDHY LGKEMIQNILPLRFANPLLKNIWNAEYIKNIQVTLAEKIGVGTRGGYYDNSGALRDMVQN HIFQIITLLAMPAPKNLTSDAIHEAKQRLLQGLQIPSYDEVSKSVVRGQYLASEHEPAYI NVDQVAPDSCTETYVAGKVKFTTGPLAGVPIYFRTGKKMREKKSRIDIVLKADSDLYEKA NENIMTIEIDPVSKIVLRLNGKEIVGTGLRVEDLSYAFNEEEMHQVPDGYERLLNDVFMA DRTNFTHWMELAQYWRYIDAIEAAWRKQNSMAIKPDQYLPNAFGPNAADNIFENADSYWI YR >gi|311091573|gb|AEKJ01000021.1| GENE 35 37333 - 38442 1051 369 aa, chain + ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 8 368 8 364 364 286 43.0 6e-77 MDELLPCNNFNRKIIHLDMDAFYASVEIHDDPTIANKAVIIGQDPRQSNGHGVVATANYL ARKYGVRSAMTTMQALRLVPAEKLVFIKPNFEKYRRVSDKIHQLMYEITDAIESVALDEA YMDVTTNKMGNFSALELATNLQKNIYRETGLTSSFGVSYNKYLAKMGSEYAKPFGRTVIL PDDALEFIASQRIEKFPGIGVKMQEQLHELQIYTGADLQKQNIKFLLDRFNKAGYIIAQQ AKGIDLRPVISKRPRKSLGLEHTFDVNIYDYDKLLTWLRNYSCELAQKLRTLNLQTRTVV IKLRTADFITITRRSALAVATNDAMTIYQHAKSSLEDEIDCVSGGVRLLGLSATDFEQKS YETLSLDLF >gi|311091573|gb|AEKJ01000021.1| GENE 36 38499 - 39455 712 318 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 1 310 1 310 311 278 46 4e-74 MNTFDEIFKKINDYSTIIIHRHQHPDPDALGSQAGLARSLKLAFPEKKILCAGGPEGDLV WINKMDEVKDEDYQGALVITVDTANTPRISDDRFRMGDFLIKMDHHPDVDPYGDLRYVEP EKPAAAEIIFDFIKAEKLPLTKEVAYPIYAGMVGDTGRFMYAETTPATLKAAYELAATGI DITEIAMNISTVTLEQAKLQNSVIDLLHVDPCGAAYAVVTQQQLHKLGINEDQASATIGT PGRIKGIIAWNIFVEKADGTYRVHYRSKGPIINQLAEQHNGGGHALASGANAVDMKEVEQ IFAEVVEVTKKYNENANE >gi|311091573|gb|AEKJ01000021.1| GENE 37 39442 - 40824 1302 460 aa, chain + ## HITS:1 COG:SP0761 KEGG:ns NR:ns ## COG: SP0761 COG0513 # Protein_GI_number: 15900655 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Streptococcus pneumoniae TIGR4 # 7 449 3 445 447 358 46.0 2e-98 MQMNNIFQTDQLKSNIKKGLGKINFLKPTPVQQQVLPLLLAHQNVVVQAVTGSGKTHAYL IPIINDLDPELLCTQAVITAPSRELASQLYKVARQLRDAAELNISIEYLGGGNDRTRQLE KASNNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMVRLGT NVTIGAFSATIPVKLEQFLNKYMEHPEFVVIDNPSVISPTVANDLIDVGSKNKKDILYTL LTMGQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYV IASDLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGRNNLYGHAITLIHEEEMQQIAQ LEKLGIHFEFKDLKNNELVERTHYHRRDNRRTRAQKLDNRLVGMVKKAKVKKKPGYKKKI KVAIQADRQQKKKIEERIKARKQKRQRKRERDRLREDLEK >gi|311091573|gb|AEKJ01000021.1| GENE 38 41046 - 43679 3232 877 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 873 1 870 879 944 56.0 0 MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN HRITSSQKSIRTNDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGL DPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQLEDNFWDIGEGPCGPDSEIFYDRGQEN NDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVSVIQ DAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALPSNS GRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIKNEE DRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGLAVD KEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDESVFEYHQLQEDHAKLLDIVVDD KLVDQVNGEQATLIFDKTPFYAERGGQVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFV ELVLPMQKGEEYVLKVDEQRRRGLKHNHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRF DFTSLEPMTKREIATVERLVNEKIWAEIPVKTTITDQETGLKMGALALFGEKYHEKVRVV QINDFSIEFCGGTHCENTDQIGMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKE IQDEVKATKVDDIQNKVVALEDALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIA KIVDVDGMNDLRELSDNWKTQNLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKI AAPIFGGGGGGRPNMAQAGGKNPAGLAKALETVLNEL >gi|311091573|gb|AEKJ01000021.1| GENE 39 43759 - 44016 385 85 aa, chain + ## HITS:1 COG:BH1268 KEGG:ns NR:ns ## COG: BH1268 COG4472 # Protein_GI_number: 15613831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 85 1 86 90 105 67.0 1e-23 MSSLDKTMHFDFNQNKGKNVYDTLQDVYVALEEKGYSPINQIVGYLLSGDPAYIPRHNDA RNLILKHERDEIIEELVKSYLGKDK >gi|311091573|gb|AEKJ01000021.1| GENE 40 44016 - 44447 549 143 aa, chain + ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 136 1 135 139 154 57.0 4e-38 MRLLGLDVGSKTVGVAVSDALGITAQEVETIPIDESKYNFGMRRVKQLVREYEVSGFVVG LPKNMDGTCGESAQRCLDYGERLKAKFKIPVYYSDERLTTIQAKRILVEEAGISDRVARK KIIDQMAAVLILQNFLEAKRKDN >gi|311091573|gb|AEKJ01000021.1| GENE 41 44454 - 44765 392 103 aa, chain + ## HITS:1 COG:BS_yrzB KEGG:ns NR:ns ## COG: BS_yrzB COG3906 # Protein_GI_number: 16079792 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 11 98 5 90 93 73 52.0 1e-13 MGEKISNKNTENQITLIDDKGNEELFEILFTFTSDDYNKSYVLLYPAAVGEDEEVEVQAF SYDADEDGAVLGSNLHEITSDEEWDMVQGVLNTFLSDERLSGE >gi|311091573|gb|AEKJ01000021.1| GENE 42 44873 - 47233 2918 786 aa, chain + ## HITS:1 COG:BH3106 KEGG:ns NR:ns ## COG: BH3106 COG1193 # Protein_GI_number: 15615668 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 4 786 3 785 785 577 41.0 1e-164 MNSKIIEKLEFKRITQMLSDLAVTEPAKKLAQELLPVSDYKTVLNNMAQTTALVNIQRVK GPLPLTDFVDVNASIKRLHINADLNAQELGNILLILSIVRDCKIFLSAIQDRELDLHAID DLIDSLLPLDDLFNALNRSLESDGTVLDTASAELNRIRHNLKANELDIKTKMEAYLKNSS EYLTESIITIRDGRYVIPVKQTYKNKFGGVVHDQSASGQTMFVEPEAVLSINNRQQQLVY EEKREIHKILKQLSLMAQEYIDEIAADAHTLISLDFLSAKSLLAKKLKATEPIFTENNEV DLHGARHPLLDPNKVVTNDIELGKNFDTMLITGPNTGGKTIILKTVGILQLMAQSGLYIT AHEGSKVGIFREIYADIGDEQSIDQSLSTFSSHMDQIIKIMANVNQDDLVLLDELGAGTD PEEGACLAIAILDYMQARLPKIMITTHYPELKLYGYNRLRTSNASMEFDVKKMHPTYKLR IGIPGQSNAFAIAEQLGMDNTVIIAGRSLMSEQNNDINKMILRLNQQTKDAEELTNQVHK KLKLCIALKNKLQAGLDWYNQQVDHQMQLTMAKVDKIVSDKRNEAEKIIKQLKQQQHDNG QFKINKVIEAKNAFNAIENETQQLAHNKILKKAKKKHDIQPGDAVKVSSYGQTGVVTKKI SDNQFEVQIGIIKVKVSGTDLDKIVSKKAKTKEMVVRSGRGIRTTQAKAELDLRGKRYED AMVELDRYIDSALLNGLTVVTIIHGVGTGAIRLGVGKYLRQSKHVQSFAYAPANEGGTGA TIVHLK >gi|311091573|gb|AEKJ01000021.1| GENE 43 47330 - 47641 494 103 aa, chain + ## HITS:1 COG:lin1196 KEGG:ns NR:ns ## COG: lin1196 COG0526 # Protein_GI_number: 16800265 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 102 1 103 103 118 54.0 3e-27 MFEELTDKTYEVETSEGLVVIDFWAPWCGPCRMQSPVIDELSEEMQDVKFAKVDIDQNPD TPKALGIMAIPTILIKKDGKLVNRFTGFTPKEKLKAAIEEYID >gi|311091573|gb|AEKJ01000021.1| GENE 44 47768 - 48166 471 132 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0428 NR:ns ## KEGG: LGAS_0428 # Name: not_defined # Def: hydrocarbon binding protein # Organism: L.gasseri # Pathway: not_defined # 1 132 1 131 131 156 61.0 2e-37 MQDNSEQLYFINSLYRDCILSEILGKDASDILYWAGKRVSRRYDLSDIDDLPEFFRIAQF GQLKLISNRRKTVVFELSGQNVTDRIESSITEFTIESGIIAECIARENKTNAEAVANIDS KRKVVEIVVQYD >gi|311091573|gb|AEKJ01000021.1| GENE 45 48262 - 49047 1058 261 aa, chain + ## HITS:1 COG:L0120 KEGG:ns NR:ns ## COG: L0120 COG0796 # Protein_GI_number: 15673264 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Lactococcus lactis # 1 261 1 263 271 209 41.0 5e-54 MDNRPIGILDSGLGGLTVLKKVIQRLPNESTIFIGDQAHMPYGDRTVEDIINLTRASVKF LLTKNVKVIIFGCNTATAAAMSVIQQEIPMQIIGVIQSGALAASKITQTNQVAVIATNAT VNSHSYVKEIAFRNAQIQVTELGEPKLAPLVEANPSDKIKKAVVAQCLAPLKHVQYDTLI LGCTHYPLLIKEIAEFIGKDKKIVDPADQVAQYTFNVLKRDNLLAEKGGKHEYYTTGDPI KFMKIAQKWMHDPTLKAQHVE >gi|311091573|gb|AEKJ01000021.1| GENE 46 49065 - 49685 414 206 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|24114209|ref|NP_708719.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Shigella flexneri 2a str. 301] # 1 197 1 194 197 164 48 1e-39 MDTLLFATTNLNKAKEVEKALKLANFPLKVITNRDLENVPEVIETGTTFLQNATLKAHKL AQFSQLPTLADDSGLMVDKLNGAPGVYSARYSGEDHNDARNNAKLLAELGGVPEQQRTAV FHTTMVLSWPDRYDCDLVSQGEILGRILTMPKGEGNFGYDPLFYVAERGKTFAEMTVEEK NKISHRGIALRKLLAELPMWWKKMSK >gi|311091573|gb|AEKJ01000021.1| GENE 47 49711 - 50556 699 281 aa, chain - ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 19 273 6 262 281 147 36.0 2e-35 MYILNNLLTPFKIQPTQAHLLDWSQLAHESVGKFLTIAFTSLIYLAIWTIGKKFINKYLI HNPHFQQKVSSRKKTFSQLLVNIFQYTLLFFYIYGILNILGLPVGTLIASAGVVSLALGM GAQGFVSDLVNGITILSESQYDVGDLVKISGFTGTVISLGIRITKLRASDGTIIYIPNRS ISIVENLTRGGIGVDISLHLDANNDFAIITKSINDANEILRPKFSRKLKKDPSILGIVSQ YKNGFTYNIHFQVLPGYQVEIKNAYFSEYIKQLQANKVIFN >gi|311091573|gb|AEKJ01000021.1| GENE 48 50681 - 51118 538 145 aa, chain + ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 3 140 1 134 135 65 35.0 5e-11 MVMSYSEIAILLIAVAIIVLVVFMIPCLVKLYKLMKSLIQVSDNLNTTISDLNSKTSLLL NQTEDLLKTSNELMADVNDKVKRLDPLVQAIDDVSESISDINNSSKKAMSNISKFSAKKV GLGIVSSILSHIIVKKHEKNNKKHF >gi|311091573|gb|AEKJ01000021.1| GENE 49 51133 - 51462 499 109 aa, chain + ## HITS:1 COG:no KEGG:FI9785_505 NR:ns ## KEGG: FI9785_505 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 109 1 108 111 69 41.0 3e-11 MGKKGSFLVGGILGFGLGILASAFLPDDVSSNIKGKITDNDIFKTLKEKYDQRTEDLKEQ MTEIPSNINDDSELKDFDDIIIDNTQSSSEKVDDNQHISDDILDLKNEE >gi|311091573|gb|AEKJ01000021.1| GENE 50 51519 - 52625 1533 368 aa, chain - ## HITS:1 COG:L96847 KEGG:ns NR:ns ## COG: L96847 COG0006 # Protein_GI_number: 15673631 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Lactococcus lactis # 3 361 4 359 362 351 48.0 1e-96 MNLDKLNEWLIKNNCDVAYISDPLSINYFTGFNMDPNERIFALVAFKDKPAFIFAPELNV EEAKHSAWNGDVYGYLDEQNPWQKIANLVSERIGRPQKIAIEKSFVSIARLEALKSVFTD ADFSTDVSKLIGELRIIKTEEEVKQLQAAGAEADYAFEVGFNALRNGVTERYVAGQIEYR LKLDKGVMHTSFETICQAGTNAANPHLGPTLNTIKPNQLVLFDLGTMHNGYASDSSRTVA YGEPSAKEKEIYEIDREAQQAAIDAARPGMTAGELDAVARDIITKAGYGEYFIHRLGHGI GMSVHELPQIMSGNDFILQEGMCFSIEPGIYIPNVGGVRIEDCGVLTNEGFKTFTKTDKQ LRYIPVKE >gi|311091573|gb|AEKJ01000021.1| GENE 51 52774 - 53775 1124 333 aa, chain + ## HITS:1 COG:lin1640 KEGG:ns NR:ns ## COG: lin1640 COG1609 # Protein_GI_number: 16800708 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 5 333 2 334 335 290 49.0 2e-78 MQKQDVTIYDVAREANVSMATVSRVVNGNTNVRKETRDKVLAVIDRLHYQPNAVAQGLAS KKTTTVGVVVPGLTNLHFAELAKGIDDIATMYKYNIILTSIENNVIDNGNVIQSILNKQV DGVIYMCNTMSPKATEAFHRANIPVVLAGTIIDNDHFGSVAIDYKEADRKALELLWKDGK KNIALIVDDKEAYINRGFRIKSYRQFLADHGIKSEYIYDNILTFEDGYNLFAKLYSDGID AVVTTKDITAAGIVNAALDSQVSIPEQFEIISATSTNIAKIVRPQLTSIQQPLYDIGAVA MRMLTKLMKNEDVAEKNIVLPYQILKHNTTLNK >gi|311091573|gb|AEKJ01000021.1| GENE 52 53855 - 55252 1605 465 aa, chain - ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 3 465 4 469 469 427 48.0 1e-119 MDLDYKKLALEKKEAILADLKELIAIDSSEDLTNTSEEYPVGPGPVTALKKFLSFAQRDG FDTQNFANYAGRINYGNGDSHVGIIGHMDVVPSGDGWKTNPFEMVIKDGKIFGRGSADDK GPSLACYYGLLILKEHGFVPSKKIDFVLGTNEETNWVGIDYYLKHEPKPDMVFSPDAEFP IINGEQGIVTLKLTFKEENRKGTNFLISFESGIAANVIPQTAKATIKDNSSIDFETEYQQ FLTENELTGEIEHQNGVINFTLTGHGAHASAPETGRNAATYLAKFLVKYDFAGKADNYLS FLASVEHNDFHGEKLGIYHQDDLMGELASSPSIFKYNENEAYLLNNVRYPQGTNPEIMVN NINERYGNFISTTVKGKAEEPHYVPGDDPIVQTLLKVYEKQTGLKGHEVVIGGGTYGRLF EHGVAFGAQPEGAPLVMHQPNEYMKVEDLINSIAIYAEAIYELCK >gi|311091573|gb|AEKJ01000021.1| GENE 53 55267 - 56634 918 455 aa, chain - ## HITS:1 COG:lin0625_2 KEGG:ns NR:ns ## COG: lin0625_2 COG0584 # Protein_GI_number: 16799700 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Listeria innocua # 28 252 1 220 243 82 27.0 1e-15 MSKCKHLYFTIVFLGIFLLESGFLVIGHRGNPNKFPEETIQSDNSAFNDGADFVELDLHL SKDNILVISHDRNLSRITGSSVIVSQNNFSYLHTLKCKNGEPIMSLNELFEYYQHKPRTK FLIETKKTSHNTPKNMEQILANVIKKYHMENRVMFHSFSAPSLETLSKLLPKIPRIFIVG SLKRINFEVLSYVNGINISADLITQNPDLIQQLHKLHKKVYVWAEMDESPKLWNWLINND IDAVVTNFPATAYRYNMAKKKTHKFSINKDAIFYSRASERVFENPYFKTKTNKKIHFSQN IHVSNAVETSSGTYYQIGAKQFIDADFVNFNLPVNCIYPYWNLPIITKYNQMTTTYVHPK YTANVEKFLKPNTKYKIYGISQNQKWLLTTSGWVPAKEILYYGIFPNTAEFNYYRKLPHN YQQINLALVPDVAFNRQYVVNFWKQCKILNNIKDF >gi|311091573|gb|AEKJ01000021.1| GENE 54 56742 - 57074 446 110 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00432 NR:ns ## KEGG: LCRIS_00432 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 6 110 2 106 106 146 75.0 2e-34 MSAKYQQLNLIEEVTRNDGSKYYEISNINQNGIAEMAADNGKIKEVRILKLNIARTKQLQ IYEKYINETYDLQTLLLESDWRNPKWIEWEKPDGKIKDAYLAILKANKVG >gi|311091573|gb|AEKJ01000021.1| GENE 55 57081 - 57620 502 179 aa, chain + ## HITS:1 COG:SA0786 KEGG:ns NR:ns ## COG: SA0786 COG4470 # Protein_GI_number: 15926514 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 30 123 4 98 127 63 34.0 2e-10 MDYTNSCNNVPAKTYHAKADVRFKDKQLLINGRTYQIIANEKNALDLDLMQKKYDPFLDQ YDFIVGDISSEHLRLKGFYSDDERVSIDKRASTIVDYLEEYCNPNSPYFIIQLMGDNTIK EIVLGRKYKHYYKYFGNQNNYFKEKKVKKIKFKSHKNYSVKISYKHNRQKKFVIRKRKG >gi|311091573|gb|AEKJ01000021.1| GENE 56 57623 - 58402 931 259 aa, chain + ## HITS:1 COG:BH3428 KEGG:ns NR:ns ## COG: BH3428 COG0647 # Protein_GI_number: 15615990 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Bacillus halodurans # 3 258 2 254 259 224 42.0 1e-58 MNKQYGCYLIDLDGTIYRGEKTIQSGVDFVNRLNEKKIPYLFLTNNTTRTPEMIVAKLAS HGVITDVDHVYTPIMATVSYLLEHNPGTDAIPVYIIGQIGLWKGLLAEDRIVLDNNNPKY VIVGMDTDLTYKKICIATNAIRKGAEFIGTNSDHVLPSGDKLLPGNGSQCAMIAVASDQK PFFIGKPSAVIVNYALKKIKKNIEESLIVGDNYETDIMAGINCRMDSLLTLTGVTTKKQL AEEKIQPTYVLNNLDEWQL >gi|311091573|gb|AEKJ01000021.1| GENE 57 58402 - 59010 377 202 aa, chain + ## HITS:1 COG:L157321 KEGG:ns NR:ns ## COG: L157321 COG4478 # Protein_GI_number: 15673126 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 16 193 15 190 205 88 36.0 9e-18 MKNKLSIVIYNFGAAILLSLWGTILLSWPILLVMMIAQRTNKLIHLSLFGALKNYSQLMS YLINPVSDKLQMSDLQSSLNGLIHFKDCKNLFSIALMLGCIWLFIFLYFEIWKKKKIVSL PHSYTICLLLLPLIVVPFSMGNFTNLFILFHRAIFTNNNWLFNPDTDPIILILTEEFFAA CSATFLLIYELYFVRLLIKKGR >gi|311091573|gb|AEKJ01000021.1| GENE 58 59243 - 59428 302 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309805299|ref|ZP_07699350.1| ## NR: gi|309805299|ref|ZP_07699350.1| hypothetical protein HMPREF9213_0640 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0640 [Lactobacillus iners LactinV 09V1-c] # 1 61 37 97 97 119 96.0 7e-26 MGRELMGLASCDDDRKAIINFTIVAAKYFNDQVTVEKINDSLKEHGQAPLTEEEKKIYGV K >gi|311091573|gb|AEKJ01000021.1| GENE 59 59558 - 60202 580 214 aa, chain - ## HITS:1 COG:lin0035 KEGG:ns NR:ns ## COG: lin0035 COG0586 # Protein_GI_number: 16799114 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Listeria innocua # 3 213 7 217 219 196 51.0 2e-50 MNLLDFILNIDKHLITIVNSCGDWTYLILFLIVFVETGLVVFPFLPGDSLIFATIAMAAS PKYHLDLIICYIIFIIAAICGDSINYELGKWSELQSNKFKWFNKLINPQKKKAAEDFFEK HGGITIVIGRFIPIIRTFVPFVSGASKMHYRTFVIYNIVGAFLWVSLFSICGFLFGNIPA VQHHFSLLIIAIIAISILPIIILSIKNKLTKNSK >gi|311091573|gb|AEKJ01000021.1| GENE 60 60230 - 61177 819 315 aa, chain - ## HITS:1 COG:lin2489 KEGG:ns NR:ns ## COG: lin2489 COG0492 # Protein_GI_number: 16801551 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Listeria innocua # 4 308 8 321 331 215 36.0 8e-56 MEYYDLAIVGAGPVGLFATKFANLHGLKTITFEALADCGGQINRLFPNKKIKDIPGYNSI IGHQLVDKLKEGINSKIITNYKVQEIIQKDSKIIIDNNYQVKTLLITSGMGAFTPKKMPL PIDSSCEKHIHYFVKNADHFQDKNVAIFGGGDSALDWAMQMADKCKIVIIHRRDQFRGME STLKFLHQHNNVRFLTPYLPQKIIWQNNQLNILLKKLGTEEMEEIKCDEAVIAFGFKSDN LLLKKWGLNLETGHVKVNSQMQSNIENIYAAGDACIYDGRVPMMALGFGEAQIAIMSIMN RLFPEKKLTIHLSSH Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:53:19 2011 Seq name: gi|311091572|gb|AEKJ01000022.1| Lactobacillus iners LEAF 2062A-h1 contig00058, whole genome shotgun sequence Length of sequence - 1435 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - LSU_RRNA 1 - 1004 94.0 # AE017198 [R:1879440..1882488] # 23S ribosomal RNA # Lactobacillus johnsonii NCC 533 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + Prom 903 - 962 80.3 1 1 Tu 1 . + CDS 1128 - 1295 90 ## + Term 1315 - 1351 0.4 Predicted protein(s) >gi|311091572|gb|AEKJ01000022.1| GENE 1 1128 - 1295 90 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFQFTASSSLMLSIHIQGDTSRCRVPPFGYLRISAYLPLPEAFRRLSRPSSASSA Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:54:12 2011 Seq name: gi|311091424|gb|AEKJ01000023.1| Lactobacillus iners LEAF 2062A-h1 contig00033, whole genome shotgun sequence Length of sequence - 159609 bp Number of predicted genes - 146, with homology - 145 Number of transcription units - 64, operones - 34 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 42 - 257 287 ## gi|315653674|ref|ZP_07906594.1| conserved hypothetical protein + Term 266 - 327 11.7 + Prom 268 - 327 7.6 2 2 Op 1 . + CDS 397 - 621 260 ## gi|259500494|ref|ZP_05743396.1| conserved hypothetical protein 3 2 Op 2 . + CDS 625 - 1323 743 ## LGAS_0564 hypothetical protein 4 2 Op 3 . + CDS 1369 - 2712 1391 ## COG1253 Hemolysins and related proteins containing CBS domains + Prom 2714 - 2773 6.5 5 3 Op 1 . + CDS 2805 - 3371 780 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 6 3 Op 2 . + CDS 3427 - 4662 1238 ## COG0513 Superfamily II DNA and RNA helicases - TRNA 4681 - 4753 61.9 # Arg CCT 0 0 - Term 4623 - 4679 2.1 7 4 Tu 1 . - CDS 4805 - 4984 136 ## gi|259500499|ref|ZP_05743401.1| conserved hypothetical protein - Prom 5010 - 5069 7.9 + Prom 4985 - 5044 8.5 8 5 Tu 1 . + CDS 5097 - 6239 1114 ## COG0381 UDP-N-acetylglucosamine 2-epimerase + Term 6261 - 6320 10.5 - Term 6256 - 6300 4.1 9 6 Tu 1 . - CDS 6306 - 6752 569 ## COG0716 Flavodoxins - Prom 6849 - 6908 10.7 + Prom 6786 - 6845 11.8 10 7 Op 1 2/0.158 + CDS 6923 - 7708 1098 ## COG0024 Methionine aminopeptidase 11 7 Op 2 . + CDS 7712 - 8632 690 ## COG1295 Predicted membrane protein 12 7 Op 3 . + CDS 8672 - 9559 1338 ## COG1210 UDP-glucose pyrophosphorylase + Term 9566 - 9608 5.5 - Term 9554 - 9596 5.1 13 8 Tu 1 . - CDS 9600 - 9893 227 ## gi|302191194|ref|ZP_07267448.1| hypothetical protein LineA_04222 14 9 Tu 1 . + CDS 9980 - 10933 1017 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 11092 - 11126 2.2 - Term 11120 - 11155 4.1 15 10 Tu 1 . - CDS 11175 - 12560 1186 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 12655 - 12714 10.3 + Prom 12522 - 12581 8.5 16 11 Op 1 . + CDS 12656 - 13471 946 ## COG2137 Uncharacterized protein conserved in bacteria 17 11 Op 2 . + CDS 13491 - 13982 568 ## LGAS_1368 hypothetical protein - Term 13782 - 13823 -0.7 18 12 Tu 1 . - CDS 13986 - 14459 448 ## LGAS_1367 hypothetical protein - Prom 14698 - 14757 7.2 + Prom 14431 - 14490 9.3 19 13 Op 1 . + CDS 14539 - 15414 1291 ## COG1253 Hemolysins and related proteins containing CBS domains 20 13 Op 2 . + CDS 15414 - 16985 1580 ## COG4108 Peptide chain release factor RF-3 + Term 17002 - 17047 6.0 + Prom 17000 - 17059 5.1 21 14 Op 1 . + CDS 17091 - 20075 2427 ## SPD_1071 hypothetical protein 22 14 Op 2 4/0.053 + CDS 20124 - 22775 2335 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 23 14 Op 3 4/0.053 + CDS 22788 - 23618 702 ## COG0266 Formamidopyrimidine-DNA glycosylase 24 14 Op 4 1/0.263 + CDS 23615 - 24208 529 ## COG0237 Dephospho-CoA kinase 25 14 Op 5 6/0.000 + CDS 24212 - 24679 756 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 26 14 Op 6 8/0.000 + CDS 24683 - 26029 1378 ## COG3611 Replication initiation/membrane attachment protein 27 14 Op 7 2/0.158 + CDS 26046 - 26945 824 ## COG1484 DNA replication protein + Term 27167 - 27206 4.1 + Prom 27036 - 27095 9.3 28 15 Tu 1 . + CDS 27214 - 29145 2130 ## COG0441 Threonyl-tRNA synthetase + Term 29254 - 29295 5.0 + Prom 29234 - 29293 3.8 29 16 Op 1 36/0.000 + CDS 29338 - 29850 394 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 30 16 Op 2 46/0.000 + CDS 29872 - 30072 313 ## PROTEIN SUPPORTED gi|42519517|ref|NP_965447.1| 50S ribosomal protein L35 31 16 Op 3 . + CDS 30109 - 30465 549 ## PROTEIN SUPPORTED gi|227526538|ref|ZP_03956587.1| ribosomal protein L20 + Term 30475 - 30509 4.5 + Prom 30494 - 30553 6.9 32 17 Op 1 10/0.000 + CDS 30609 - 31361 832 ## COG1349 Transcriptional regulators of sugar metabolism 33 17 Op 2 19/0.000 + CDS 31361 - 32275 1068 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 34 17 Op 3 . + CDS 32303 - 34195 2346 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 34214 - 34271 8.1 + Prom 34235 - 34294 14.7 35 18 Op 1 6/0.000 + CDS 34314 - 34832 461 ## COG2179 Predicted hydrolase of the HAD superfamily 36 18 Op 2 1/0.263 + CDS 34832 - 35944 867 ## COG1161 Predicted GTPases 37 18 Op 3 9/0.000 + CDS 35944 - 36573 564 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 38 18 Op 4 6/0.000 + CDS 36641 - 37174 603 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 39 18 Op 5 . + CDS 37186 - 37530 410 ## COG0799 Uncharacterized homolog of plant Iojap protein 40 18 Op 6 . + CDS 37540 - 38700 1056 ## COG1323 Predicted nucleotidyltransferase 41 18 Op 7 1/0.263 + CDS 38701 - 39228 590 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein + Term 39289 - 39329 -0.6 + Prom 39247 - 39306 2.5 42 19 Op 1 40/0.000 + CDS 39344 - 40069 915 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 43 19 Op 2 . + CDS 40047 - 41588 1457 ## COG0642 Signal transduction histidine kinase + Term 41680 - 41716 0.3 44 20 Tu 1 . - CDS 41629 - 42588 1054 ## COG0706 Preprotein translocase subunit YidC - Prom 42752 - 42811 9.3 + Prom 42523 - 42582 7.9 45 21 Op 1 . + CDS 42737 - 43498 219 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 46 21 Op 2 1/0.263 + CDS 43571 - 43918 515 ## COG1733 Predicted transcriptional regulators + Term 44155 - 44198 8.1 + Prom 43977 - 44036 8.7 47 22 Op 1 40/0.000 + CDS 44209 - 45258 1122 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 48 22 Op 2 . + CDS 45258 - 47672 2536 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 49 22 Op 3 3/0.105 + CDS 47696 - 48796 784 ## COG1559 Predicted periplasmic solute-binding protein 50 22 Op 4 1/0.263 + CDS 48869 - 49354 777 ## COG0782 Transcription elongation factor + Term 49358 - 49399 9.1 51 23 Op 1 . + CDS 49409 - 51511 1874 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 52 23 Op 2 3/0.105 + CDS 51518 - 54100 2325 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 54132 - 54184 10.7 + Prom 54157 - 54216 7.6 53 24 Op 1 9/0.000 + CDS 54254 - 54661 534 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 54 24 Op 2 13/0.000 + CDS 54679 - 55170 649 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 55 24 Op 3 13/0.000 + CDS 55187 - 56011 1024 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 56 24 Op 4 . + CDS 56008 - 56835 819 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 57 24 Op 5 . + CDS 56890 - 57540 762 ## COG1285 Uncharacterized membrane protein 58 24 Op 6 . + CDS 57554 - 58834 1361 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog + Term 58850 - 58896 6.1 - Term 58836 - 58882 9.1 59 25 Tu 1 . - CDS 58908 - 61292 2139 ## LGAS_0712 x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) - Prom 61316 - 61375 5.6 + Prom 61357 - 61416 5.7 60 26 Tu 1 . + CDS 61449 - 63983 2649 ## COG0308 Aminopeptidase N + Term 64079 - 64145 30.0 + TRNA 64061 - 64134 79.7 # Arg TCT 0 0 + Prom 64063 - 64122 77.3 61 27 Op 1 . + CDS 64296 - 64457 268 ## PROTEIN SUPPORTED gi|116095596|gb|ABJ60748.1| Ribosomal protein L33 + Term 64461 - 64497 2.2 62 27 Op 2 4/0.053 + CDS 64514 - 65065 480 ## COG0212 5-formyltetrahydrofolate cyclo-ligase + Term 65139 - 65188 -0.8 + Prom 65137 - 65196 6.8 63 28 Op 1 3/0.105 + CDS 65229 - 65777 484 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 64 28 Op 2 1/0.263 + CDS 65777 - 65995 241 ## COG4483 Uncharacterized protein conserved in bacteria 65 28 Op 3 . + CDS 66030 - 66431 440 ## COG0607 Rhodanese-related sulfurtransferase 66 29 Tu 1 . - CDS 66486 - 66665 267 ## LGAS_1381 hypothetical protein - Prom 66693 - 66752 6.9 + Prom 66648 - 66707 9.7 67 30 Op 1 . + CDS 66740 - 67675 1027 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase + Prom 67682 - 67741 4.6 68 30 Op 2 6/0.000 + CDS 67780 - 69117 1297 ## COG0174 Glutamine synthetase + Term 69135 - 69180 8.2 + Prom 69129 - 69188 8.0 69 31 Op 1 . + CDS 69247 - 70395 1208 ## COG0477 Permeases of the major facilitator superfamily 70 31 Op 2 12/0.000 + CDS 70435 - 71388 983 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 71 31 Op 3 . + CDS 71381 - 72889 939 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) + Term 72931 - 72993 1.0 + Prom 72920 - 72979 13.3 72 32 Tu 1 . + CDS 73019 - 74944 1763 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases + Term 75117 - 75161 -0.7 73 33 Tu 1 . - CDS 74950 - 77208 1801 ## COG0474 Cation transport ATPase - Prom 77360 - 77419 80.3 + TRNA 77331 - 77417 69.6 # Ser CGA 0 0 + Prom 77342 - 77401 80.4 74 34 Op 1 . + CDS 77514 - 78068 399 ## LDBND_1239 membrane-associated phospholipid phosphatase + Prom 78123 - 78182 6.3 75 34 Op 2 . + CDS 78213 - 79499 1948 ## COG0148 Enolase + Term 79515 - 79567 15.2 + Prom 79526 - 79585 6.8 76 35 Op 1 . + CDS 79635 - 81506 1853 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases 77 35 Op 2 . + CDS 81524 - 83146 1546 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 83333 - 83378 0.7 78 36 Op 1 32/0.000 + CDS 83527 - 84576 1104 ## COG1135 ABC-type metal ion transport system, ATPase component 79 36 Op 2 . + CDS 84569 - 85270 830 ## COG2011 ABC-type metal ion transport system, permease component + Term 85272 - 85319 10.4 + Prom 85309 - 85368 7.1 80 37 Tu 1 . + CDS 85393 - 86772 1187 ## COG3610 Uncharacterized conserved protein + Term 86795 - 86835 4.1 - Term 86783 - 86823 5.5 81 38 Tu 1 . - CDS 86827 - 87333 510 ## COG2606 Uncharacterized conserved protein - Prom 87358 - 87417 8.2 + Prom 87303 - 87362 13.1 82 39 Op 1 . + CDS 87395 - 88327 798 ## PROTEIN SUPPORTED gi|227890128|ref|ZP_04007933.1| ribosomal protein L11 methyltransferase 83 39 Op 2 . + CDS 88364 - 88744 177 ## LGAS_0856 hypothetical protein 84 39 Op 3 1/0.263 + CDS 88754 - 89086 537 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 85 39 Op 4 7/0.000 + CDS 89149 - 91005 2084 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 86 39 Op 5 . + CDS 91005 - 91442 509 ## COG1490 D-Tyr-tRNAtyr deacylase + Term 91645 - 91682 2.1 + Prom 91444 - 91503 5.8 87 40 Op 1 13/0.000 + CDS 91689 - 92975 1341 ## COG0124 Histidyl-tRNA synthetase 88 40 Op 2 . + CDS 92978 - 94816 2208 ## COG0173 Aspartyl-tRNA synthetase + Prom 94818 - 94877 3.2 89 40 Op 3 . + CDS 94897 - 95469 656 ## COG0431 Predicted flavoprotein + Term 95475 - 95509 2.4 + Prom 95490 - 95549 7.9 90 41 Tu 1 . + CDS 95593 - 96471 749 ## COG1284 Uncharacterized conserved protein + Term 96473 - 96519 11.5 - Term 96466 - 96501 1.0 91 42 Tu 1 . - CDS 96523 - 97356 959 ## COG1806 Uncharacterized protein conserved in bacteria - Prom 97443 - 97502 10.4 + Prom 97449 - 97508 13.9 92 43 Tu 1 . + CDS 97558 - 97734 292 ## PROTEIN SUPPORTED gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 + Term 97742 - 97783 5.5 + Prom 97744 - 97803 9.5 93 44 Op 1 1/0.263 + CDS 97831 - 98274 515 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 94 44 Op 2 17/0.000 + CDS 98294 - 99256 1048 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 95 44 Op 3 2/0.158 + CDS 99253 - 99780 646 ## COG0319 Predicted metal-dependent hydrolase 96 44 Op 4 16/0.000 + CDS 99796 - 100698 948 ## COG1159 GTPase 97 44 Op 5 3/0.105 + CDS 100702 - 101448 522 ## COG1381 Recombinational DNA repair protein (RecF pathway) + Term 101644 - 101679 4.0 + Prom 101623 - 101682 4.9 98 45 Op 1 19/0.000 + CDS 101702 - 102607 1056 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 99 45 Op 2 . + CDS 102609 - 104678 2173 ## COG0751 Glycyl-tRNA synthetase, beta subunit 100 45 Op 3 31/0.000 + CDS 104697 - 106499 1510 ## COG0358 DNA primase (bacterial type) 101 45 Op 4 5/0.000 + CDS 106511 - 107659 1220 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 102 45 Op 5 9/0.000 + CDS 107720 - 108403 784 ## COG2384 Predicted SAM-dependent methyltransferase 103 45 Op 6 . + CDS 108390 - 109187 667 ## COG0327 Uncharacterized conserved protein 104 45 Op 7 . + CDS 109207 - 110451 1230 ## COG2195 Di- and tripeptidases + Term 110508 - 110553 3.8 + Prom 110498 - 110557 8.8 105 46 Op 1 8/0.000 + CDS 110762 - 111136 375 ## COG1725 Predicted transcriptional regulators 106 46 Op 2 . + CDS 111129 - 111818 188 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 107 46 Op 3 . + CDS 111836 - 112558 579 ## gi|309803151|ref|ZP_07697248.1| putative membrane protein + Term 112563 - 112606 6.1 + Prom 112579 - 112638 8.9 108 47 Tu 1 . + CDS 112665 - 113555 774 ## HMPREF0868_0084 hypothetical protein 109 48 Tu 1 . - CDS 113785 - 114066 399 ## HMPREF0868_0245 putative toxin-antitoxin system antitoxin component ribbon-helix-helix domain-containing protein - Prom 114197 - 114256 8.8 110 49 Tu 1 . + CDS 113966 - 114160 138 ## + Prom 114213 - 114272 5.9 111 50 Tu 1 . + CDS 114336 - 115049 572 ## COG1451 Predicted metal-dependent hydrolase + Term 115070 - 115110 1.1 - Term 115058 - 115098 1.1 112 51 Tu 1 . - CDS 115293 - 115895 561 ## COG0681 Signal peptidase I + Prom 115869 - 115928 11.2 113 52 Op 1 . + CDS 115983 - 116729 656 ## LAC30SC_06265 hypothetical protein 114 52 Op 2 . + CDS 116731 - 117696 748 ## FI9785_910 hypothetical protein 115 52 Op 3 . + CDS 117696 - 119105 1062 ## COG0144 tRNA and rRNA cytosine-C5-methylases + Term 119111 - 119149 -0.2 - Term 119098 - 119136 -0.2 116 53 Op 1 3/0.105 - CDS 119140 - 120165 816 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 117 53 Op 2 5/0.000 - CDS 120178 - 121251 946 ## COG1577 Mevalonate kinase 118 53 Op 3 5/0.000 - CDS 121263 - 122240 753 ## COG3407 Mevalonate pyrophosphate decarboxylase 119 53 Op 4 . - CDS 122255 - 123175 1125 ## COG1577 Mevalonate kinase - Prom 123342 - 123401 8.8 + Prom 123151 - 123210 7.1 120 54 Op 1 8/0.000 + CDS 123244 - 126717 2735 ## COG3857 ATP-dependent nuclease, subunit B 121 54 Op 2 . + CDS 126710 - 127315 481 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 122 54 Op 3 . + CDS 127263 - 128006 597 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 123 54 Op 4 . + CDS 127991 - 130330 1575 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 124 54 Op 5 . + CDS 130354 - 133155 2052 ## COG1199 Rad3-related DNA helicases 125 54 Op 6 . + CDS 133152 - 133661 328 ## LJ1201 hypothetical protein 126 54 Op 7 4/0.053 + CDS 133735 - 135033 1649 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases + Term 135052 - 135085 4.0 127 55 Op 1 6/0.000 + CDS 135094 - 135729 544 ## COG3935 Putative primosome component and related proteins 128 55 Op 2 . + CDS 135755 - 136381 691 ## COG0177 Predicted EndoIII-related endonuclease + Term 136387 - 136425 5.1 - Term 136374 - 136412 5.1 129 56 Op 1 7/0.000 - CDS 136431 - 138740 2212 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 130 56 Op 2 . - CDS 138745 - 139335 692 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase - Prom 139380 - 139439 9.4 + Prom 139153 - 139212 5.3 131 57 Op 1 6/0.000 + CDS 139408 - 139947 551 ## COG4474 Uncharacterized protein conserved in bacteria 132 57 Op 2 3/0.105 + CDS 140023 - 140364 481 ## COG3599 Cell division initiation protein + Term 140456 - 140492 -1.0 + Prom 140691 - 140750 5.3 133 58 Tu 1 . + CDS 140837 - 141961 1187 ## COG0116 Predicted N6-adenine-specific DNA methylase + Term 141965 - 142019 -0.6 + Prom 141964 - 142023 10.2 134 59 Op 1 . + CDS 142054 - 142401 263 ## LDBND_0912 hypothetical protein 135 59 Op 2 . + CDS 142401 - 144077 1889 ## COG2759 Formyltetrahydrofolate synthetase 136 59 Op 3 15/0.000 + CDS 144078 - 144554 382 ## COG0597 Lipoprotein signal peptidase 137 59 Op 4 . + CDS 144562 - 145497 334 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 138 59 Op 5 24/0.000 + CDS 145502 - 146563 926 ## COG0505 Carbamoylphosphate synthase small subunit 139 59 Op 6 . + CDS 146570 - 149737 2932 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Term 149740 - 149796 1.3 - Term 149726 - 149784 10.1 140 60 Tu 1 . - CDS 149805 - 151502 1578 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP - Prom 151579 - 151638 10.5 + Prom 151510 - 151569 3.7 141 61 Tu 1 . + CDS 151594 - 152568 847 ## COG1307 Uncharacterized protein conserved in bacteria + Term 152570 - 152625 1.3 142 62 Tu 1 . - CDS 152663 - 153259 757 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 153299 - 153358 5.0 143 63 Op 1 . - CDS 153380 - 154315 1134 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase 144 63 Op 2 24/0.000 - CDS 154394 - 156889 2450 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 145 63 Op 3 . - CDS 156915 - 158858 2158 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 158983 - 159042 7.0 + Prom 158882 - 158941 6.5 146 64 Tu 1 . + CDS 158969 - 159598 511 ## COG0344 Predicted membrane protein Predicted protein(s) >gi|311091424|gb|AEKJ01000023.1| GENE 1 42 - 257 287 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315653674|ref|ZP_07906594.1| ## NR: gi|315653674|ref|ZP_07906594.1| conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 71 2943 3013 3013 82 92.0 9e-15 MNNTSDLNNEANESLTANKPKDLSTTEKKTNSKITKRLPQTGEKENSVLGLLIIGLSGLL GIVDRKKRKDK >gi|311091424|gb|AEKJ01000023.1| GENE 2 397 - 621 260 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259500494|ref|ZP_05743396.1| ## NR: gi|259500494|ref|ZP_05743396.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_04167 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0914 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0818 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0488 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0914 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0818 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0488 [Lactobacillus iners SPIN 1401G] # 1 74 1 74 74 108 100.0 1e-22 MKQKGMLLGLVLMIIGIVCWLMVKYVLYDIKVLYPVGCIILCVGGLIVTINLFINTVKDD KILRSKIDQKKEKE >gi|311091424|gb|AEKJ01000023.1| GENE 3 625 - 1323 743 232 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0564 NR:ns ## KEGG: LGAS_0564 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 232 3 234 234 214 42.0 3e-54 MLDLLVSPAQWAYFDNWYNFISPTIFFAFGACFIFVGLLPISCIKNKITITLFIINVCLG LILAAVVYVHNQSAKEYFKESHYVSAMTRTYSFQLFSKRYYAYDDVDTLRYISDPSTPLA IKSVYKATQVKEPITYLGKDDCYVYIKMHNQKLKFGKDICRKVNGNVAYMTGYRFDMRSA GFSKIGFLKLPNYFRDKLEIPAKLWNTKAPQKVINNYDRPGLVGHWITDSCK >gi|311091424|gb|AEKJ01000023.1| GENE 4 1369 - 2712 1391 447 aa, chain + ## HITS:1 COG:BS_yugS KEGG:ns NR:ns ## COG: BS_yugS COG1253 # Protein_GI_number: 16080182 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Bacillus subtilis # 10 438 11 431 434 243 32.0 8e-64 MSITSITANLIVIGIAFLIAIFFVVSEFALVQTRSSQLEDLIANKQGNIKKLHRALHMVK NLNEYLSTTQVGTTLVGVILGWVGQSTIEKGLTKLFGMANLFGGKTNAILGATVGVILLT YLEVVITEIVPKNVAIDMPVKCLMAIVNPLVMFHIIVYPFVWLLNHSADLFLKLMGLHTA GEEKEVYSQSEILRLSQKAVTGGSLDQDDLLYMERAFELNDKDAKDIMTDRTRVEVLDVK DNVKQALHMYLEEGYSRFPVVRDNDKDDVVGYVYSYDLVKQSIDDSDVPISRLIRAIITV PESMKIQDILKLLIKKHTPIVLVVDEYGGTSGIVTDKDIYEELFGSIKDEIDDVADEYIV KDETGIIRVSGKTTLYDFERYFHTKLKAFQDNDIITVGGYFMEQYPDLNAGEFVELEGFK FKLVAIEQGFMRWFEVEKIVKDTPINE >gi|311091424|gb|AEKJ01000023.1| GENE 5 2805 - 3371 780 188 aa, chain + ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 11 185 5 179 179 177 51.0 9e-45 MANCDNISSIIDRRLFTEEDIKLMCKRLGKELTKEYAGKDLLVIGALKGAVFFLTDLVRE MDVPLQMDFMDVSSYGDSMESSGKVRLDVDVQTDVKGRDVLIVEDIVDTGHTMKYMKDLL ASRGANSVKCCALLNKTERRVDDVDVEYYGSIVENEFVVGYGLDLAGRYRNLPFVGVLKP EIIAKYTK >gi|311091424|gb|AEKJ01000023.1| GENE 6 3427 - 4662 1238 411 aa, chain + ## HITS:1 COG:BS_yfmL KEGG:ns NR:ns ## COG: BS_yfmL COG0513 # Protein_GI_number: 16077810 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Bacillus subtilis # 12 369 15 376 376 187 32.0 3e-47 MFKWNVMYLKEIREVLNDEKKARPTLIQERTYDALKNGESIVGLAKTGTGKTLAYGLPIL ERAREIGGLAVILEPTSELAVQTKNVLLPYVKALGLKSIALVGAGNRNRQMEQLKKEKPS ILIATPGRLFDFISAKKINYQDIKALVIDEADDILEFAKLDLLSALGQNLSSDAQIVLFG ASESSITKNCETIFERSFFLIDVRSEQKLAVKHYFLQVSNEYKIQFLQRLTKLDKFKGLI FFSSNESQMRFARIVAHTKMRFAILNNEMDKTVQKNILTSFQKGKVNLLFVTDLIARGLD LSEVTYVVNFEIPDDANTYLHRSGRTGRMNNAGYVVNLGDDHDFRKLKKMIAPVEVKQVY FKGYQLVTEKPLQKAKDKKVVSMSETKKKGKKKNRWKKQKNKGYHAKKQDK >gi|311091424|gb|AEKJ01000023.1| GENE 7 4805 - 4984 136 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500499|ref|ZP_05743401.1| ## NR: gi|259500499|ref|ZP_05743401.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_04192 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0908 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0812 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0482 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0908 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0812 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0482 [Lactobacillus iners SPIN 1401G] # 1 59 1 59 59 63 100.0 6e-09 MIYLIYLTGILIVIASVCLVISMDKKKNANLRKKMLFVAIICQLLIFTFIFIMLNTAFK >gi|311091424|gb|AEKJ01000023.1| GENE 8 5097 - 6239 1114 380 aa, chain + ## HITS:1 COG:lin2681 KEGG:ns NR:ns ## COG: lin2681 COG0381 # Protein_GI_number: 16801742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Listeria innocua # 1 379 1 377 379 489 63.0 1e-138 MKQIKVMTVFGTRPEAIKMAPLVLKLKADERFDEVTVVTAQHREMLDQVLEIFDIKPDYD FNIMHKNQTLGEITSKVMLDLSKVIQDEQPDIVLVHGDTTTSFAAGLATFYEQKKLGHVE AGLRTWNKYSPYPEEMNRQMTDDLTDLYFAPTSLSKHNLLKENHNSDNIYITGNTAIDAL KQTVQKDYHHEVLDKIKAGNKIILVTMHRRENQGEPMRRVFKVMKQVVDSHNDVEIIYPV HLSPRVQAVANEVLAGDPRIHLIAPLDVVDFHNLAKRSYFIMTDSGGVQEEAPSLGKPVL VLRDTTERPEGVAAGTLKLVGTDVDVVRKEMITLLENKQAYDKMANANNPYGDGCASDRI IEAIASYFEPNLYCKPSDFK >gi|311091424|gb|AEKJ01000023.1| GENE 9 6306 - 6752 569 148 aa, chain - ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 3 145 4 145 149 111 44.0 4e-25 MKAQIVFASMTGNNEDMAEILSEELTTLGFDVTNTDVSFADATSYLDADLCIMVTYTYGE GIFTDELDDFYEQLIQLDLSGKKFAVMGSGDKIYKEHYCENVDDFKKAFEKCGATQAANP VKIENAVDDHDVILIENAAKEMLAAFKK >gi|311091424|gb|AEKJ01000023.1| GENE 10 6923 - 7708 1098 261 aa, chain + ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 249 13 252 252 254 51.0 8e-68 MQKSGRLLASLFEELREVIKPGISTWEIEKFAQKYVKSHGGRLSEQGFEGYKYGTCISVN DEIAHATPRKDKILNEGDLVSVDVTCNVDGYETDSCTTYPVGKISAEDQRLLDVTKKAMY LGIDQAIVGNRIGDIGSVIQKYVEDDNHFGDVRELVGHGIQPTIHEDPEVPHFGKAGHGL RLREGMTITVEPMVEAGGDWRILQKTVEDPNDDWVYYATPDGSKAAQFEHTFAITADGPK ILTLQKPYDGFEKYLPHFDEE >gi|311091424|gb|AEKJ01000023.1| GENE 11 7712 - 8632 690 306 aa, chain + ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 23 282 27 280 289 133 32.0 4e-31 MKKGSIKHNCSHFMLILTQIMTRGEIGQTSIIIAYYILFSIFPVIMIVGNMLPLLQINTS SIATYLNVIFPEQIAQFILPIVKSLLHQHSNGSISLGIIFALWSFSGLVNSIRIAMNKIY GVYEQEKTCPWWYYFVTRTLMLLLSIFMIYIFLLAIFVVAFGNQIMNFLGVTLNFSVEWL NQLLHYRWPLIILMTILFNTYINYTIPNIGMKSRITFPGTIFTTICWCGLSYFFGLYLHE FGTRWENYGIIGTFIIFLMWLNLAAILFLIGVCLNATISYIKYGNAQYKLRPITDYLKSC TSKANR >gi|311091424|gb|AEKJ01000023.1| GENE 12 8672 - 9559 1338 295 aa, chain + ## HITS:1 COG:L177590 KEGG:ns NR:ns ## COG: L177590 COG1210 # Protein_GI_number: 15673321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 2 293 12 304 313 395 70.0 1e-110 MKVRKAVIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQFIVEEAKKSGIEDILIVTGKSK RPIEDHFDSNPELEAELKAKHKDSLLELTQSITRLGVNIYFTRQPHPAGLGDAIYRARSF VGNEPFVVMLGDDLMSDTVPLTQQLINCYNRTHASTIAVMKVPHEEVSKYGVIAPDDEIE PNLYNVKTFVEKPSLDEAPSDLAIIGRYLLTPEIFEILASQKPGRGGEIQLTDAIDTMNK TQRVFAHVFTGERHDVGNKEGYLETSIEYGLTHPETSEELKQYIIKLAAKLSKPK >gi|311091424|gb|AEKJ01000023.1| GENE 13 9600 - 9893 227 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302191194|ref|ZP_07267448.1| ## NR: gi|302191194|ref|ZP_07267448.1| hypothetical protein LineA_04222 [Lactobacillus iners AB-1] hypothetical protein HMPREF9223_0623 [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF9223_0623 [Lactobacillus iners ATCC 55195] # 1 97 1 97 97 154 95.0 1e-36 MKLVNLLQLMQDVDSNYQIYFHEDTQQSNYPISKIIFSQNKCILTSLSINPRTIYQLLTI CRQIKHKNVNVYFAINNHEYSIFGMQIQPDKKQIILK >gi|311091424|gb|AEKJ01000023.1| GENE 14 9980 - 10933 1017 317 aa, chain + ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 16 315 12 305 308 266 46.0 4e-71 MRKKHRKKCYIWLITIITMFLTLYLGAGYYFYQVAFVPGHKSFLKKHKALSKSDPLYKEK LWYLNSKKQQYSIKSADNKFRLVANYLPASSKSFKTVVILHGYMGNKDKMGQYAALFHQL GYNVLLPDARSHGASQGNFIGYGWPERSDVKKWSQYIIKRQGSNSKIVIFGLSMGAATAM MTSGEKLPTQVKAIIEDCGYTSIEDELNYEANKLYKLPAMVEVPIVKLLSLSVKMKYGYF LSEGNCIKQLKKNHRPFLFIHGEKDKFVPMHMVYKNYQACRGPKELWVTKNAAHAESFPK HPKIYKNKIAQFLNKYV >gi|311091424|gb|AEKJ01000023.1| GENE 15 11175 - 12560 1186 461 aa, chain - ## HITS:1 COG:SP1901 KEGG:ns NR:ns ## COG: SP1901 COG2265 # Protein_GI_number: 15901728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 24 458 1 433 436 340 42.0 3e-93 MRHILKKNNPITSEKDVIITIKRLGINGEGIGYYKKKIIFIPNALPGEVVVAKITETFPK YLEGELIRIKEKSPHRVAFPKNVNPETGGLELAHLDYDSQLLFKKELIKDSLLKFHPRNY QKIKIKNTIPAPKQWYYRNKAQYQIENIKNKISLGMYAPKSQKIIDLPIMPTQSKNTQKV EFAIKKLIEKMHIAIADSRYKKDGIKTVVVRQSHATDEIQVTLVTIGKNIKNLDKLAEKI IELENVVSVFQNESQWNNPLVWGNKTTKLIGKNYITEQILNKKFILSPRAFFQLNPEQTE VLYSTALNYLELNANSILVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNN VKNAEYINGSVEKILPQMQKDGIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNP STLARDLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK >gi|311091424|gb|AEKJ01000023.1| GENE 16 12656 - 13471 946 271 aa, chain + ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 258 1 259 264 140 35.0 3e-33 MAIITNVSTQKQKKRYNIFLNGQYAFSVSENILIKKRLFKGTNLTDEQIAEIKQAELDQR TLNLAQDFLSYQMRTVNEVCIYLRQKGVSETAIKVAIADLKKLKLLDDQNYVKLYVNNNL QIGKEGPNSIRHKLLNKGVDNKLIENVLSSYDNIDWVDPGIRLVKSMSNKLGKLSTKAII QKTKLKLMQHGFSSDQLDLVIEQLDLSNNSDEQLAALIKEGIKAYKKYAQEPDFKRNQKI RRYLFTHGFDSTEIDQFLDGQIIDFNSLEDY >gi|311091424|gb|AEKJ01000023.1| GENE 17 13491 - 13982 568 163 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1368 NR:ns ## KEGG: LGAS_1368 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 8 159 8 159 165 149 48.0 4e-35 MEIIQKQACTMIGKVFLPTDIDEQRSYAAAIQQVENDINFVNFLKENNLEHQRAALYVFA PDSFMYWYGVVVHQLPNELKGLRQFGLPSCKVTNYITESQNLTHFLSPVNQTIPMFLDKL NKENVTYHENLGESDVPYILEELDLDTKKLTQSLYLDASDLSK >gi|311091424|gb|AEKJ01000023.1| GENE 18 13986 - 14459 448 157 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1367 NR:ns ## KEGG: LGAS_1367 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 10 157 1 148 153 173 68.0 2e-42 MMSRNEVLFMKKVRIYLVFVFLLLIPYLCSLALIGSCYNALVYHSANAWRSAVGAFIGAL IMFAIKATIQRPLDLVSENISSKLLKQIFRFFSIRRRKIFLIGNIALDFILCLLATILIR HILPLSIIIDKVTGIILLIMLISTCIGAYIEYDNLSI >gi|311091424|gb|AEKJ01000023.1| GENE 19 14539 - 15414 1291 291 aa, chain + ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 42 273 198 432 449 240 53.0 2e-63 MSTDPGAGDFFSKLRAKFQADEDIDADQELTLKLDEFYKAHAIDELEYSMIQGVINFKEK IAREVMVPRTDAFMVDKHDDFKKNLVEILREPYSRVPVYDGDKDKIVGVIHIRTVLRKAF ELGFDHLSYEDVMFDPLYAPETVELKDLLIEMQQTQRQLAILTDEYGGVVGLVTIEDLIE EIVGNIDDETDVAQVLFHKISENKYVISGKMTLDDFNEEFDTDLEMEDVDTIAGYVITKL GLIPGKGEKLSVKLDDGIILTTRRMRGSRLQTLLLTLPKTDTKNTKEDIED >gi|311091424|gb|AEKJ01000023.1| GENE 20 15414 - 16985 1580 523 aa, chain + ## HITS:1 COG:L0369 KEGG:ns NR:ns ## COG: L0369 COG4108 # Protein_GI_number: 15672331 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Lactococcus lactis # 4 523 3 521 523 689 65.0 0 MNKLTEKVNSRRTFAIISHPDAGKTTITEQMLLFGGIIRNAGTVKARKSGHYATSDWMEI EKKRGISVTSSVMQFEYDNKRINILDTPGHQDFSEDTYRTLMAVDAAVMVIDSAKGVEPQ TKKLFKVVKKRGIPIFTFMNKLDRDGRDPLDLTAELEDLLDIECVAMNWPIGMGKQLKGL YDLANKRVELYRHEDDSDRFLPLNEDGTLDNNIALSHDSLFESTLADIELLKEAGNNFDL DKILRGDQTPVFFGSALANFGVETFLKSFVELAPAPKEHELIDNTTIAADDDEFSGFVFK IQANMNPNHRDRIAFIRIGSGEFQKGMDVTLARTNKVIRLNNATEFMSSSRVQVSEAVAG DIIGLYDTGNFQIGDSIYAGKKKIEYPELPQFTPEIFMRVTAKNVMKQKSFHKGMTQLVQ EGAVQLYRGYATDDYILGAVGQLQFEVFAFRMKNEYNSEVELTSLGGRVARWINPEQLDP KMSSSRNLLVKDREGEPLFLFENAFAERWFKDKYPDVELTSKL >gi|311091424|gb|AEKJ01000023.1| GENE 21 17091 - 20075 2427 994 aa, chain + ## HITS:1 COG:no KEGG:SPD_1071 NR:ns ## KEGG: SPD_1071 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_D39 # Pathway: not_defined # 23 593 7 600 1061 160 29.0 4e-37 MTALFVRKSDIMNKCNFNSKQFYNQLIDELIVSQKNNSLFFLIGAGVSNQQGYGDWNDYV RKLAEYWGLRNKRYADTLKYISSLAGLSNKRKIDFINQIIKKICNSDEQFKIRCLDFEKK HFGNHQLQINNDILSTLIKFSAIFFTTNYDYEVENAIGSNSIIKDYMELSETDELLPNFV VHLHGEPNGNVSNFINTSDKYLKLYANLDNLQHKLTMFYKKKKNPVLIIIGSGLQEDELL YSMCPDNEISVYALCKYDNCGNNDTISADLASIKEKFYLEKNIKIIWYGKEFSDLSVFCN QLYDDVQHKIMKRCGFITPDELISEAIASKDFSECYCLHKVIEQKNMDLLDAFFTNISND YFKKLLNDKVFIEQYIAKNYLSSVFLERSLALFNQINYHTRKVIENSIKLGNTWANKSAS INIIVAESNNYVGTDKIAFMEEYLCNILTQITRPDEIKNSDVKCLYLLQMLQNDKIFLNT EDYDLSEAFYSRFYRVLINIDHCLNVDQYSFNELREHCIVKKLYTLLFNNKLRFCHSKAF PEFLFKSKLIRRLLINIDLIHDLSNTNLSNLIKYFDYNKQIQGSEVNIFVTKHIKQIQTD AKYINLSVAIRQKIQNGNYYLDGNMYFNNNKDLMRWTNIDTCARYIAKAIHNNSFDINCY QIFHSIINQQIKDESLLNQLFLFDIWKLKCDCSNIINILNFFETDLGRYINILNELENTR PQLLAKCRSKIINNLSRFNNKNICDYLRGKYLPLTGANIRCSVNYLVGYAHSHTTAVDYK DETVFKEPAIVLANCTFNDDYALLEMIVKILIATANPNCIDSQKNNSLFNRNLDRIVLIV LLNFHKFYISYKNQLLAWIDFLCLQIGLDKFIEKIFLNIKYLKNNDLNILFGNLKSIINN LDSNLISLQCLNSLTSLDDKEQVNIIIQFLIYAKASNIIPFSVDNSYILAHMLDLLNRYD YVAEMKNLYECFENIVPNHDYAFLGNKYHIRTKC >gi|311091424|gb|AEKJ01000023.1| GENE 22 20124 - 22775 2335 883 aa, chain + ## HITS:1 COG:L0270_2 KEGG:ns NR:ns ## COG: L0270_2 COG0749 # Protein_GI_number: 15674124 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Lactococcus lactis # 325 883 1 548 548 570 54.0 1e-162 MKKLLLIDGNSVAFRAFYALYKQLDKFKSPDGLHTNAIFTFKNMLDVLLKNIQPTHMLVA FDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDILGTM AKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPKQFI DVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIRDKNNA ILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEIDNKVQD ECHYEILDKDNLSEIFATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKIYVCDDVTLLQ EAPLNKILEDKNIAKQVFDLKRNYVGLQRLDITLSNVTDDIMLASYIADSENNAGDLGVL ANSYQEFYVQSDEIIYGKGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHL YKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQ LGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLD YIQADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDY SQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIV YGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLL PDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELL FDVPSEELDLIRTLVPEIMQQAAQLDVPLIADANWGHNWYEVK >gi|311091424|gb|AEKJ01000023.1| GENE 23 22788 - 23618 702 276 aa, chain + ## HITS:1 COG:lin1599 KEGG:ns NR:ns ## COG: lin1599 COG0266 # Protein_GI_number: 16800667 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Listeria innocua # 1 272 1 272 273 248 46.0 7e-66 MPEMPEVETVRRTLEPLIKGKIISNVTIWYDKIIVNDADFFQRKVVGQKILDIDRYGKYL LIRLTNNLTIVSHLRMEGKYHFLDSDAPKQKHEHVQFTFSDNTYLRYDDVRKFGRMQLIE TGTERRNTGIKNLGFEPNSEDFTLDFFLNKVKARKKAIKNVLLDQSIVCGLGNIYTDEVL WQSKIHPLSIANKIAQDSLVELFYDINNTIKIAIQYHGTTFHSFLDADGHTGKYQSMLKV YGKSGEPCSRCNTTLEKIKVNGRGTTFCPLCQVVYK >gi|311091424|gb|AEKJ01000023.1| GENE 24 23615 - 24208 529 197 aa, chain + ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 194 1 195 197 139 43.0 5e-33 MTYFLGLTGGIATGKSTASNFFKKQGIPVIDSDLIAHQQLSKRNVIEKLSQLFGNMILTS SGQIDRKKLGAIVFNDKNSLAKLNAELHPLICQQIKLKIAEYERIGCPFVVLDAPLLYEL KLDKVCNTVLVISLNFELQKKRLKERNNLSDLEAEKRIYSQLPLEIKKNYANYVIENDQS VEILENKLATLLKNIRR >gi|311091424|gb|AEKJ01000023.1| GENE 25 24212 - 24679 756 155 aa, chain + ## HITS:1 COG:BS_ytcG KEGG:ns NR:ns ## COG: BS_ytcG COG1327 # Protein_GI_number: 16079952 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus subtilis # 1 151 1 151 152 175 53.0 3e-44 MECPNCHENASKVIDSRPSDENRSIRRRRECENCGYRFTTFERVEQTPLLVIKNDGTREP FNREKILRGVMMAAQKRPISSQQLDTLVDHVDNAVRKQGVSEISSKEIGEIVMDELANLD DVAYIRFASIYRQFTDVSGFMEAMTDMLKKQHGED >gi|311091424|gb|AEKJ01000023.1| GENE 26 24683 - 26029 1378 448 aa, chain + ## HITS:1 COG:lin1596 KEGG:ns NR:ns ## COG: lin1596 COG3611 # Protein_GI_number: 16800664 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Listeria innocua # 19 417 22 423 458 81 27.0 3e-15 MYSCTNPKQPFYVANNVTITADGQKILSRLYQPLIGHLGMSIYITLANEFNSLPLSIDYK VLYQLQEQLDCGLKDIFDSIHKLEAVGLVKTYLGDNPRLGSIIIFKLSEITNAQEFFSTF LLSSLLQEKVGIVAFDNLVKDFTPSIFQGLNDAQDVSSGFFDVFKLTGDHAIEPTKEVMD AKKVIAADSNSKVDIKMGKMIQKIDWQFLEDLLLKYHIPANEVDSHRTEIAQLMTFYQLG EQDFTKLATMCLHAGDKKLDMKLIQRMAHNQLGQQKLVHTVEQQLSETKSEDSLIPDFDN DEKKLLDDVNSNQPLDYLYKIKEKKGGYVTANEKRVVYRLENEYRLPSELINVLIKTCLD YTSVLTLNLADRIANNWLQNKIHTAQEAIAYTKKWQKNRQVRRFNNNSTRKQAKTDWKNY DVDNGKNTDVSLSNEELNNIFNNFGRKE >gi|311091424|gb|AEKJ01000023.1| GENE 27 26046 - 26945 824 299 aa, chain + ## HITS:1 COG:BS_dnaI KEGG:ns NR:ns ## COG: BS_dnaI COG1484 # Protein_GI_number: 16079950 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Bacillus subtilis # 1 298 1 309 311 195 37.0 1e-49 MENISSILKKIIANHKCQINQDQIIDLVLNNASVQEFLQVHKLKITDDIFKRSLNNLYIY IQECEHPSKVNQGYEPYLFVNGNMIDFAYRATLQKRIDDRKKYVQNLIHLVDLPLSLKNV ELSAVDKTPERIKALQEIGLFIQQYHVDKHAKGLYLEGDFGVGKTYMMAGLANGLAQEGN EVVFLHVPSFIAGLSDHFKDNSLTDKIMKIATATIVIFDDIGAESLTEWSRDEVLGVILQ RRMDNQLPTFFTSNMNFDALTIHFAQVKNSYDDVKAKRLMERIRCLSKEVFVGGENRRR >gi|311091424|gb|AEKJ01000023.1| GENE 28 27214 - 29145 2130 643 aa, chain + ## HITS:1 COG:L0357 KEGG:ns NR:ns ## COG: L0357 COG0441 # Protein_GI_number: 15673893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Lactococcus lactis # 5 641 4 644 646 793 59.0 0 MSLVITLPDGSKKEFNHALTIKEVASSIATSLAKSAVAGKVNDEIRPLDFVVDTDARVAI ITDKDEEGLQVLRNTAAFVFEMVASKQYPSVRLGTSELEEDGFFVDTDKEDQIKASELPD LEKEMQKIVKNGEKIEYKIVSKSELLDLFKDDPYKLELLKEEADEVAVYKLEDFVDFGFN ALLMNTGKLKHFKLLSVAGAYWQGKSSNPMLQRIFGTAFFKEADLKADLQRREDIKERDH RTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVLMNLDA YKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIAELGMM HRYEKSGALSGLQRVREMTLNDGHTFVELDQVQSEFAKILKLIMEVYRDFDITDYYFRLS YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGEAAFYGPKLDIQTKTALGND ETMSTIQLDFMLPERFNLSYVGKDGEEHRPVMVHRGIVGTMERFIAYLTEIYKGAFPTWL APLQVKIIPVNNDAHGEYAQNVKDQLMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVL GDDELQHNSVNVRKYGSEDQESKALSEFVSELSADVASYSRNK >gi|311091424|gb|AEKJ01000023.1| GENE 29 29338 - 29850 394 170 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 1 161 1 163 166 156 47 6e-37 LNEEIRAREVRLIGEDGEQIGVVTKSEALQRATEADLDLVLISPNAKPPVARIMNYGKYR FEQQKKEKENRKNQKVTAVKEIRLSPTIEGNDFDTKLKHVRNFLAKGAKVRVSIRFRGRA ITHNELGKEVLEKMAEQAKDLSSVTASPTMEGRSMFLILSPLSDKDKKKK >gi|311091424|gb|AEKJ01000023.1| GENE 30 29872 - 30072 313 66 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519517|ref|NP_965447.1| 50S ribosomal protein L35 [Lactobacillus johnsonii NCC 533] # 1 66 1 66 66 125 90 2e-27 MPKQKTHRASAKRFKKTASGELKRHQAYTGHRFHGKTKKQRRHLRKAAMVSASDLRRIRQ MLSQMR >gi|311091424|gb|AEKJ01000023.1| GENE 31 30109 - 30465 549 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526538|ref|ZP_03956587.1| ribosomal protein L20 [Lactobacillus jensenii JV-V16] # 1 118 1 118 118 216 92 7e-55 MPRTKGGTVTRKRRKKILKLAKGYRGAKHLQFKAASTQLFVSRKYAFRDRKKVKSEFRRL WIARINAAARQNGLSYSKLMHGLKVAGVDINRKMLADIAYNDEKTFAELAATAKNALN >gi|311091424|gb|AEKJ01000023.1| GENE 32 30609 - 31361 832 250 aa, chain + ## HITS:1 COG:BH0826 KEGG:ns NR:ns ## COG: BH0826 COG1349 # Protein_GI_number: 15613389 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus halodurans # 1 234 1 233 251 176 42.0 5e-44 MLTQERHQIIVSHLKSRGICSVKELCSVTNSSQATIRRDLYELQQKGKLIRVRGGARSLD EFSSDVEQTIRFNLHVEEKKQIAQAAAMHVRDGDNIFIDAGTTTYEMIQFLRDKKDLTVV TNGIDAAIACIELGIRTKILGGTIKKKTHATIGTQTCQQLMQFNFNASFLGSNGLGSNGC YTTPDCAEADIKKQAVDCSKVTFILMDKSKIGIESFVNFAKVESVTLITDQLTEMDKKKI PKKTNIEEIN >gi|311091424|gb|AEKJ01000023.1| GENE 33 31361 - 32275 1068 304 aa, chain + ## HITS:1 COG:SP0876 KEGG:ns NR:ns ## COG: SP0876 COG1105 # Protein_GI_number: 15900759 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Streptococcus pneumoniae TIGR4 # 1 301 1 301 303 279 46.0 4e-75 MIYTVTVNPALDYVIQLEQFNNGDISRSNNCNFFAGGKGINVSQILNQINVENTAWGFVG GFTGKELVRQLNTKRIVSDFVKISDLTRVNVKIHAKSESEINASGPKIFPKEIEAFKMRL EDLTSEDIVVLSGSLAPSLPADFYKQLLPTIVEKGASFAVDTTGKALLETISYKPLVIKP NHHELADLFDIKIESKEQLFECAKKLLDMGAQNVIVSMASEGGYLITSDHIYHGIPAVGK VVNSVGAGDSMLAGFVGTYTMTKDVIESFKVGMACGAATAFTEDIAIKEQIDAIYPQIGV ETII >gi|311091424|gb|AEKJ01000023.1| GENE 34 32303 - 34195 2346 630 aa, chain + ## HITS:1 COG:L185031_3 KEGG:ns NR:ns ## COG: L185031_3 COG1299 # Protein_GI_number: 15672941 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Lactococcus lactis # 293 628 2 350 351 291 45.0 2e-78 MKIEELLNPKLAILNLQANDKDSAIREMADMMADQGIVNNEEEFIKSIWDRENQTTTGIG DGIAMPHARNKNINKAAVLFAKSENGIDFKSLDGKPVHLFFMIAAPEGADNAHLQALAKL SSLLIDPEFVDELKKATSGEKVISLFKQKDAAITNEKNKKPKISSERPLIVGVTACINGI AHTYMAQEALIKAGEALGYNVHIETNGSEGVKNKLTAEDISKSEGVIIASDKKVEMARFD GKPLVSAPVVAGINKPQDLIKQIADHQASIYNAGGQTTKQADKAEISVGSTIYRNLMNGI SHMLPFVIGGGILIALSFIVEQYAGGAKSPLFVFLNTIGGMAFTFMVPVLSAYIAESIGD LPALMPGFVGGYMASNVINNAKSPAGFLGGLAAGFMAGYITLALRKVFSKIPKSLEGMKP MLLYPVLGLLLIAAIMYYIVSPIFSGLNFAITNFLNHMGTGNLIILTSILGGMMAIDMGG PFNKAAYVFASGAFANNPHDPVNAILMAAVMVGGMVPPFATAIGTVLFKNKYTESERRAG ISNWILGWSFITEGAIPFAAADPGRVIPSCVLGSAIAGFIVGLTKVGIPAPHGGFWVAPL ATNIVWYFIAVIVGSLVSGVVLSLWKKAVK >gi|311091424|gb|AEKJ01000023.1| GENE 35 34314 - 34832 461 172 aa, chain + ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 153 25 175 194 142 45.0 3e-34 MIFRPTYTIDSIYNLDINALKNMGIKAIFSDLDNTLLAWNNFETDDSLQKLERRLADADI KLIVISNNSSERISKVLDVYRIEFAARARKPLPIGINNAIEKYKLNKSDVLMVGDQLLTD IVAGNLAGVRTVLVKPLVKTDKWNTRINRCVEKFIFFVFRFTNPIKFEEHLK >gi|311091424|gb|AEKJ01000023.1| GENE 36 34832 - 35944 867 370 aa, chain + ## HITS:1 COG:SP1749 KEGG:ns NR:ns ## COG: SP1749 COG1161 # Protein_GI_number: 15901581 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 4 370 2 368 368 363 48.0 1e-100 MCDEEIRCIGCGSILQDKDSKLSGYMPHSAFNKMIQEPDTSVYCQRCFRLRHYNEITPVN ENNDDFLRLLNSLGNKKALIVNVVDLFDFNNSLITSLDRFIGDNEFVLVGNKVDLFPKNS KESKIKDWMRQEANRNGLFPKKIFLLSAIKKRNIDELINYLATKGKNEDIYFVGTTNVGK STLINAIIETRSEYKNLITTSKFPGTTLDSIKIPLNEGHYLVDTPGILSKKQMASRLTGS ELELVAPKKQLKPATYQLLPGQTIFLAGLGRIDFIKGPASGFTIYVARDLYLHRTKTINA DEFYLKHKSDLLNPPCDSDDLGALKGQIYSTSEKSDILFGGVGFITVPSGVVIKAYTPEG IGLGIRRALI >gi|311091424|gb|AEKJ01000023.1| GENE 37 35944 - 36573 564 209 aa, chain + ## HITS:1 COG:SPy0308 KEGG:ns NR:ns ## COG: SPy0308 COG1057 # Protein_GI_number: 15674475 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pyogenes M1 GAS # 22 208 24 210 210 179 45.0 3e-45 MSEVFLKTKPKVLLVRKNLEAKQIGIMGGTFNPIHNAHLLIADQVAKKLNLDEVWFVPDN IPPLKKVADKIDANDRRTMIELAIAGNPKFSVKSFELKRGGISYTVDSLKYLKKAYPQYR FYLIMGSDQVAQFSKWKEPNTIATLATLVGVNRANYSANTNYPMIWVDCPSFAISSTLIR QNIKTNNSIRYLVPEAVREYIKKKGLYRE >gi|311091424|gb|AEKJ01000023.1| GENE 38 36641 - 37174 603 177 aa, chain + ## HITS:1 COG:lin1522 KEGG:ns NR:ns ## COG: lin1522 COG1713 # Protein_GI_number: 16800590 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Listeria innocua # 1 174 14 186 191 139 41.0 2e-33 MDERRFQHCIRVSEECKKLAKLNGYYDIYKAQVAGFIHDYAKQISVDRFIKIIKEQDFDL DLLNYNRVIWHGIVGAYFIQHELKINDDEILTAVRRHTTADVEMSLLDKIVFVADYIEPG RDFEGVEEARKVAYDNLDEGVGYELAHTLAYLVKQRSKIYPKTVLAYNKWSVINSKE >gi|311091424|gb|AEKJ01000023.1| GENE 39 37186 - 37530 410 114 aa, chain + ## HITS:1 COG:BH1328 KEGG:ns NR:ns ## COG: BH1328 COG0799 # Protein_GI_number: 15613891 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Bacillus halodurans # 1 113 1 113 117 95 39.0 2e-20 MENTELLDLTLEAISERHGEETKAYDMRGISILADYYVITTAGSNRQLHAIANSIIEKVH EKGKNDYRIEGSRDSNWLLIDLGDVVVNIFTFEARGFYGLEKLWSNGKQLDIEE >gi|311091424|gb|AEKJ01000023.1| GENE 40 37540 - 38700 1056 386 aa, chain + ## HITS:1 COG:SP1742 KEGG:ns NR:ns ## COG: SP1742 COG1323 # Protein_GI_number: 15901574 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 385 1 362 365 206 36.0 6e-53 MDAVGIIAEYNPFHSGHEFLLNQARLISQNKPIVVLMSGNYVQRGQISICDKWSRAKSAL LSGADLVFELPFSYAVQPADIFAYGSMKILEQLGVSDLVFGVEDDQIDYMNLGVKISKLA QSSHIFKDYTQTYSTQYNQMLIEQIGYDLTQPNITLAVAYAVANCSLSRPLRLHAIKRFG SGGHNDKYIQDIVASATAIRRQILYELNGDFSKLENYLPKEELLWLSKQAVFPNWEMMFP FLKYRLESTNINHLQSIYQMSEGLEYKMKAEIHQSHNFEDFLHKIKSKRYTYARLRRLCL YTLLDITCDDIEEANQIITPMLLGYSLRGRKYLKKIRKSTNLPIISKVDKKNSEIGSLRL QIKVDRFFEQLIGYDQNFGRKPFEVR >gi|311091424|gb|AEKJ01000023.1| GENE 41 38701 - 39228 590 175 aa, chain + ## HITS:1 COG:SPy0334 KEGG:ns NR:ns ## COG: SPy0334 COG1399 # Protein_GI_number: 15674493 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Streptococcus pyogenes M1 GAS # 37 175 34 178 178 75 31.0 3e-14 MLTYSFLNIENSKEPLVYVDQDVKFEADFFDRAKDFILDIKNVHIKGQFFYQDPFVTGNF EVEYDVIVPSTRSLKPVSIKNSFTFTENYAEVLPSEDEDAGTVILIENDIIDLQKAVEDN LLLNLPTINLTDAEKENGEFPEGEGWTVISEENYKNRPRNTINPQFDKLKNLFNK >gi|311091424|gb|AEKJ01000023.1| GENE 42 39344 - 40069 915 241 aa, chain + ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 231 1 226 226 263 66.0 2e-70 MSKILIIEDEKNLARFVELELQHEKYDTTVESNGRKGLDLALRDNYDAILLDLMLPDLNG LEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQ IEKRASGEAAGVQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTR EQLLKKIWGSDSKIETNVVEVYVRYLRNKIDVPGRSSYIKTVRGTGYMVRTDELDEFDTS L >gi|311091424|gb|AEKJ01000023.1| GENE 43 40047 - 41588 1457 513 aa, chain + ## HITS:1 COG:lin1415 KEGG:ns NR:ns ## COG: lin1415 COG0642 # Protein_GI_number: 16800483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 13 505 9 482 483 280 37.0 5e-75 MNLIHHYNKKETRRSSLTLKWVAIVATTIMVSFVIFSLTIYSLIKSQSLEQESDVTKNVV RTFEQRLVNINEPFQVSNVVTTLSPNTLRLISGNSPNYNRKENGVFDDDILATLTNKDIN IYIFDPQKNLVFSNSNWVSNEDLKSVNQKKASELIYKTRGGMHFRNAERIYSNDNRKLLG TLVVDNRMVQTNKLLKQLQQSMVFLSILAIIFFLVASYFIVDGIVKPIKRMTKISREIDQ DPNARERMPNIRRNDELGELVVNFNKMLDRIQNYILQQKQFVGDVSHELRTPVAVIQGHL NLLERWGKDDPQILEESIHASLQETDRMKHLIQEMLDLTRAEQVDMQFPDKVSDVNEVLI RTVNDMKMIHKDFTINLDITDLKPDTIIKMYRNHLEQLLIILIDNAIKYSTDRKEVNVSA STENKSVIIAVQDFGEGIDSVEQEKIFNRFYRVDKARTREKGGNGLGLSIAKKLTESYHG TIGVTSILGTGSTFRLKFPLLKKKSLTGSQATK >gi|311091424|gb|AEKJ01000023.1| GENE 44 41629 - 42588 1054 319 aa, chain - ## HITS:1 COG:L164312 KEGG:ns NR:ns ## COG: L164312 COG0706 # Protein_GI_number: 15672551 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 32 317 23 306 307 162 36.0 7e-40 MKKIKYTITSALIAIIAIITTACATNTGNWTPPLVGPYAWIYNLFGHPLQNIMLHVSNLL GGTNGAGWAIIIITFVIQLIVLPLRLSSQSKMIKQQEKTKRLQPQLSLIQAAMKKNSNKQ MQLSQLQMKIYKDNNMSMIGGMGCLPLLIQLPIMMGIYQAVAYSKTLASSSFMGISLSKP SIVFAVVAAILYLIQGYLSLIGISEQQKQTMLITVIASPLMTLVFSIMYSGALGLYFLVG GIVIVIQQLIATFILMPKVRADVDKELTKNPIKEVINQEMIDQILNESTDQMSQNKSAEI TNLHEQLRKRNSGKQNRNK >gi|311091424|gb|AEKJ01000023.1| GENE 45 42737 - 43498 219 253 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 111 250 101 240 255 89 35 1e-16 MKEINSVNNSIIKQIRKLKQKKYRKDQMSYLIEGFHLVKEALDMEQKYEYVIGTQETINK LKLTNKIFDKSIILVNQAICDQLSDTENSQDIFMVLPINQPHSFSFKFGKWVILDNLTDP GNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIEQVLLDFKNN GLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLN AAVAAGIMIYYFS >gi|311091424|gb|AEKJ01000023.1| GENE 46 43571 - 43918 515 115 aa, chain + ## HITS:1 COG:lin1183 KEGG:ns NR:ns ## COG: lin1183 COG1733 # Protein_GI_number: 16800252 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 19 114 5 102 107 82 48.0 2e-16 MTDKSMEIAENAQPDPKDYSLCGHLINAFSIIGKKWNGLIINALCDTEAMRFRDLARCIS RCSDRVLVERLKELEQENIVQRQVDHGIISYSLTTKGKELKPVCEHVHNWADKWA >gi|311091424|gb|AEKJ01000023.1| GENE 47 44209 - 45258 1122 349 aa, chain + ## HITS:1 COG:BS_pheS KEGG:ns NR:ns ## COG: BS_pheS COG0016 # Protein_GI_number: 16079916 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Bacillus subtilis # 5 346 3 343 344 434 57.0 1e-122 MNLFEQLKSLQEIGLEKIRNSKDIQELEKVRVNIVGKKGQLTEILHSMKDVSKEERPKIG QQVNKLRDIFQKELEETKQSLLQVALNKRLEGEKIDVTLPGRRIIAGAKHPINIILDDLE AFFIGMGYQVVQGPEIETDHYCFEMMNLPKNHPARDMQETFYIDEENLLRTQTSGDQARV LEVHDFSKGPLKMVGPGKVYRRDDDDATHSHQFQQMEGLVVDKNVTMSDLKGTLELIAKH EFGADRKTRLRPSYFPFTEPSVEMDVSCFNCNGTGCGICKNTGWIEVLGAGMVHPNVLKN AGIDPEVYGGFAFGVGLDRFAILKYGVSDIRDFYTNDIRFLSQFRKEED >gi|311091424|gb|AEKJ01000023.1| GENE 48 45258 - 47672 2536 804 aa, chain + ## HITS:1 COG:SPy0769_2 KEGG:ns NR:ns ## COG: SPy0769_2 COG0072 # Protein_GI_number: 15674815 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 150 804 4 657 657 507 41.0 1e-143 MLVSYNWLKDFLDLDIEPNELAEKITRTGVEIADVIHPQSGLKKIVVGHVLTCDIVEGTH LHVTQVNVGEAEPLQIVCGAPNIAAGQKVIVALHGARIAGNEKIKRGKIRGIQSEGMICG LQEIGFDDKVVPAKYANGIFVFDEDTDVQPGDDIYEALGMDDYILDFDITPNRADTLSME GAAYEVGAIIDQTPKIEEISLKSDGKDWTNSLKVSVDPELATKFYLRKITGIKICSSPLW MQRRLWNAGIRPINNVVDVTNYVMLLTGQPLHVYDATTFSNGLLEVRRAHASETLQLLND KSVELDENDIVITDGNKPVMLAGVMGGKASEVTDQTTDIILESAIFNGSLVRKSALRHAN RTEASSRFEKGVNSDNTMKALDIAALLLRNNTDGTILNGIIKGIDKIAEPVNIRTTISYI NKTLGTNLKDHDIIKIFDRLNFPIKVNGDELVVNVPHRRWDISIAADLVEEVGRIYGYDN LISTQPLLAETHGGYSPTESIIRRIKKIIQGQGMLEAISYSLTTLEKATSYALNPKPTVK IAMPLNTSRSVMRQNLICGLLDAAAYNMARNQSNIGIYEQGRVYYKDDSNYIEHEHIAAL YSGNIYADNWQHLDQNIDFYYVKGQLTNIFIELGLDLHDIVYKAENIKGMHPTRTAAIYL KNKYLGMIGMLSHEELYSEKALRGNEIYVYELDLDVLIPEISKGVTAKSAPKFPAINRDL SLLIDAHITNDAIISNIKANAGKYLTDIKVIDVYEGSQIEAGKKSIAYSLTFRNEKETLT DEVVSLAIAEITHNLESELGAVVR >gi|311091424|gb|AEKJ01000023.1| GENE 49 47696 - 48796 784 366 aa, chain + ## HITS:1 COG:SPy0348 KEGG:ns NR:ns ## COG: SPy0348 COG1559 # Protein_GI_number: 15674503 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Streptococcus pyogenes M1 GAS # 13 357 147 511 524 237 37.0 3e-62 MFDQDTKKQNKLKKEASNKLLRWIFTFLGVFVVLFMLVATVFTIYALQPVDSQNRSHVVV HIPVGADNKEISKILEKKHLIRSSIVFNAWMKIKSVKGFQAGDFYISPSMNNNQIVNQLQ GAGGRIVKNHLLIREGEQIDEIATAVASHTKYSKSSFINLMNNQEFLQELAHKYPKLLKS SMKAKNVRYHLEGYLFPANYDVYQSMSLRELVDKMVAKTNETLKPYYTDIKKLKMTVHQV LTLASLIEREGVNKKDRRMIAGVFLNRLDAHMPLQSDIAVMYALKKHKHRLSLKDIKVDS PYNLYVHKGFGPGPFNNPSLDSISAVFNPLERNRHYLYFVADLKTGKVYFNRKYIQHLNK NNSLGQ >gi|311091424|gb|AEKJ01000023.1| GENE 50 48869 - 49354 777 161 aa, chain + ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 159 4 160 160 168 61.0 4e-42 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEMYTIVGSDESDPLSGK ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVTTSGK >gi|311091424|gb|AEKJ01000023.1| GENE 51 49409 - 51511 1874 700 aa, chain + ## HITS:1 COG:SP1673 KEGG:ns NR:ns ## COG: SP1673 COG0768 # Protein_GI_number: 15901508 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 16 699 8 677 680 394 34.0 1e-109 MKTYKRKNSLKSKIASTSLRLNIILGIICVLFLLLIGQLAYLQLIYGGRFQTEVQKTDKK IVCNNVPRGVMYDSKGRILVGNKANNAITYTKNSNLTTAKIYDISEKLSKYIRLNDETPT KHQLFDYYLANSKNALKINRQLPRNQRYDEHGDALDDHIVYQNTLKYLRSKKLVFSKRQK TAALIFNKISGAYTLSTIYIKNKHITGKELTLVGENLSELPGVGIGTDWSRDYPNGESIK SIIGSVSSEKAGLPNTNLQYYLSQGYSRNDRVGTSYLEEKYEPLLKGTKSKSQVISKHKS DSIDQTKTIYKGESGASLILTINSKYQKKVDKALKTVYNEAQRAGATRYSSGAYAVAMNP KTGALLAITGLMHNTKNNKIVDNALGVINQAYVMGSVVKGAMVSGGLLNNVITPANNTLP DVPIYLPATPVKKSVYPIGTFGALNAPTALEVSSNIYMMQLALRWLHAKYVPKSYISVPK NAFTILRRNFAMFGLGQKTGIDLPGESHGITGRSFDKNGNILSGSVLDLSYGNYDAYTPI QLVQYISTIANGGYRMKPYLVQSIGKTDPHNNKISILYNTKPKVQMCVPYKKDQLDVIKK GLYQVVHGTNGWGTGRFLKKEKPAIAGKTGTAETFFFDPEHPGNIHAPEVINSTFVGYAP ADNPKIAVAVVFPGLNPNLEGTFTLQVAKAMFNNYFKMYK >gi|311091424|gb|AEKJ01000023.1| GENE 52 51518 - 54100 2325 860 aa, chain + ## HITS:1 COG:lin1832_1 KEGG:ns NR:ns ## COG: lin1832_1 COG1221 # Protein_GI_number: 16800899 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 8 319 1 319 432 263 40.0 1e-69 MSKNGIHMDDAKDKVVSYLNHVSKSMTTVEIANSLNLSRSVISNYLNTLFKENRIKKISG RPIRWSKNCADVSERTSSFCNFIGYDGSMKHVIEQVSAAVAYPPNGLNILITGNSGVGKS FLAKKIYEYAKQIKIIRSNSPYFVLNCADYANNPELVSSMLFGYVKGAYTGADSSHNGLL LQANGGYLFLDEVHRLSSENQEKLFSFIDNGLFYQIGDNSHPIKSNVRLIMATTERPTDT LLTTFLRRIPIHVTIPDFLKRSIDERLTLLRYIIHQEAVKLNKKIYVNNQVVSALVQTNN RGNIGYLKNLIQIACSIAYKKQYGLDQIDLSMDSLLIDKLPNFEDYGDLLIDGQAAFIFN EKNSLKNAKFAQLMTEFHKLTVDFSSDNVQKVKSSIRKINQLLENSCQKTGLYYRHQELF KKIIEQQFGLNKTSYLEPLMFLFYEAKFCIDNHDLEPLYHHINISFSRSLHVAVCFYKNL DIEDKVKQSLIIVLAMLLSDHVDENITIRGLMIAHGKNTATSIQTVVNSLCGNYLFDAID MPINVGVSSIIQETNALIDTFNTTKGFILMVDMGSLSQLYSEISSHINGDLLVVNNLTTI TALDLALKMQQKMTFQEITNRVDQGYHIDTQYFEGVSQNINILVSCVSGLGIAEKISELF QTLMPDNIQIVPVDYSTLKYKIMNCDWNYFKQTILVLTTVDIDDKIPFDQMNIYDLLDAT GERKLNKCLSQYLSQDKLKKLNQKLLRFFSKEGISEKLSFLNPDVILKEVEDVNSKYEDF YHLKLDGKIKLNLYLHIALMIERLIVHNTKDISIQAISNEEKDFFKITKSIFQPLEMKYN IHIPNYELSLLYELFRQFIK >gi|311091424|gb|AEKJ01000023.1| GENE 53 54254 - 54661 534 135 aa, chain + ## HITS:1 COG:SPy1057 KEGG:ns NR:ns ## COG: SPy1057 COG2893 # Protein_GI_number: 15675049 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pyogenes M1 GAS # 5 134 6 140 141 93 44.0 1e-19 MTDILIASHGHFASGLKNSIKILTGLDSNIQTIDAYVDERDYVADIKKFVKNAKKPAVIF TDLKGGSVNQKVMLEVASHDDIYVVTQMNLAIIISILLDSEPLNKGRLKELISQSQVELV EINSSDNYQSDDFFS >gi|311091424|gb|AEKJ01000023.1| GENE 54 54679 - 55170 649 163 aa, chain + ## HITS:1 COG:SPy1058 KEGG:ns NR:ns ## COG: SPy1058 COG3444 # Protein_GI_number: 15675050 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 1 160 1 162 163 161 56.0 4e-40 MIAQLRVDDRLIHGQVALVWTKELDTPGIVVANDNAAKDAMVQMTLKMATPTGKKLLIRS VQDAIAVFNNPKAANMRIFALTNCVEDALEIAKHVSNIEGINVANVGRFANGQGKVTQLT STLMLNDEEMVALKQLSELDIPVFTQVVPSNARTSIASLLAEK >gi|311091424|gb|AEKJ01000023.1| GENE 55 55187 - 56011 1024 274 aa, chain + ## HITS:1 COG:SPy1059 KEGG:ns NR:ns ## COG: SPy1059 COG3715 # Protein_GI_number: 15675051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 7 274 1 263 263 243 53.0 2e-64 MLQIALLASLCVFICFGGNWLWGQTMIERPLVVGAVAGLVFGDLQTGILIGASLEAIFMG AVDIGGALSAEPVTATVLATTFAITLNVNMKAALALAVPIGVFAAFISMFLKNVVMNIFA PLVDKVAANDDSKGLTKLHFGMWFINYFVFSLVTFFSVLAGAQPVQHLVKQIPANLMAGL AATGGLLPAVGFAILLRMLWSKNLSPFYFLGFILAAYVNLPSVAIAAIGIIIVILQWNRD KQIMDLENKQKNINTTHIAETLDNKDQEEEEFFS >gi|311091424|gb|AEKJ01000023.1| GENE 56 56008 - 56835 819 275 aa, chain + ## HITS:1 COG:SPy1060 KEGG:ns NR:ns ## COG: SPy1060 COG3716 # Protein_GI_number: 15675052 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pyogenes M1 GAS # 1 263 1 263 275 286 54.0 3e-77 MRFTKNVTPEDRKMLNRIFLRSFTVFASRAGATKTHAPGFMYSIMPALDRYFKDNKAEHR AAMMRHTTWYNITQNVGTFVMGLVASMEKKKAENSKFDAESTVAIKTSLMGPLSGIGDSI FWGVLRVIAAGIGISLASQGSIFGPILFLLIYNIPSILTRYYLTYAGFTLGDTFIQDMYE SGSMKLLNKAASTLGLMMIGCMTATMVKFQTKLSIPIKGGKAILMQSYLDQLWKGLVPLA LTLLCYWLLSKKVNVNWILLGILVLSLVLGLVGVV >gi|311091424|gb|AEKJ01000023.1| GENE 57 56890 - 57540 762 216 aa, chain + ## HITS:1 COG:FN0215 KEGG:ns NR:ns ## COG: FN0215 COG1285 # Protein_GI_number: 19703560 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Fusobacterium nucleatum # 1 169 28 205 244 123 39.0 2e-28 MIAGVIGFDREHKNRPAGIKTHALVCAGACLIALLQKQIGFDALQLAILRPELSGILRAD EARLIAQVVSGIGFLGAGTILVNHRVVLGLTTAASLWAVAGIGLSFGMGYYNIGLVGALF VILVLVFSKKIIRVNTIKKLEIKYRHKFETKEFIQKYFENKGIIVSDVNFKVTQDADKII YVNVYEIEIPRDLNYASIIEDISMNKNIMCIQMISI >gi|311091424|gb|AEKJ01000023.1| GENE 58 57554 - 58834 1361 426 aa, chain + ## HITS:1 COG:lin2555 KEGG:ns NR:ns ## COG: lin2555 COG1508 # Protein_GI_number: 16801617 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Listeria innocua # 18 420 18 445 447 176 29.0 8e-44 MKYKNGLSLRLKESLITRLFLSPKLKQDLDILSYNTEDLLKVLHDIAETNPFIDLKYTNA NTTTLDWVQDPSQDSLVEYLIKQIQLSAWSNNDKKLVTFLIYKLDNNGYLRFTCKQLANE IEYSEADIQNAKNLLHELSPLGVGAYDLNECLLIQAKKLMHFNPIALAILEKHLLERLAD TSSWNSLPWKKEKILEALKELRKLEPTPGAKFDNSTNIQYLIPDLIFEIDNGHVLVKDSK FNLPEVVFNEVEYTNLKGSCATNEVEYFNAQKKQFMDLQLSLERRQKTLIRLGEYLAKYQ LAYLKTMDKKQLKALNMNNVAQSLGLSVSTISRAVKDKYFECNNRIISLKIMFMKSFKNN ITAMKVTDTIERLINEEDKSHPLSDQDICDQLLLQGINISRRAVTKYRTKMNIQNSYWRK LNDCNK >gi|311091424|gb|AEKJ01000023.1| GENE 59 58908 - 61292 2139 794 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0712 NR:ns ## KEGG: LGAS_0712 # Name: not_defined # Def: x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) # Organism: L.gasseri # Pathway: not_defined # 1 793 1 793 794 1151 69.0 0 MKFNQYAYVKIDPKKQIEELKNINFLPVNFEKYDFSDLLGTLFKNLLAEAKTPEAKTAKL SEYAINENETLTTFLAQNPQAITKNEFYNVALQLLGYHVIYDYDLNNPIDCLNKHALPYI DKKEFTLNDLPEVFYRLLNTRSANGQILIDVMAAKGYFTQFWGKNEFLFFNGKSLPVFDT SKVIREVVYVESDLDTDEDGQPDLLQTTIFRPDESNIIPVPALYTASPYFGGIIANEAKN HNVDENLEDATLSDYPKYVAKPHVFANKPSSDNNQATEEAIHKSSYALNEYLLARGFASV FAGAIGTRGSDGLRITGAPEETESAKAIIEWLHGDRIAYTDRNRTSEVKADWCNHKIGMT GRSYLGTLQIAIATTGVAGLKTVVSEAAISSWYDYYREHGLVVAPEACQGEDLDLLAETC QSNLWDAGNYLKLKDKYETMQQDLLKKSERNTGQYSDFWDARNYRHRADNIKCSWISVHG LNDWNVKPKNVYKIWQKVKNLPIQHHLFLHQGPHYNMNNLISIDFTDLMNLWFCHELLNL QNNAYNQWPTVMIQDNLQADLWHQEKDWNNVDGQTSTYFLHQNGELQKAPDTQAKEQKFT DQGGKIFKQAKISEQQWQNEFIAGNERWLDQQLRFTTDEFIHTTTITGRPTIKLSASCSK TTGQLSVALVEIGNRKRLTDTPSFFRDQNQEFGYRFGSQMLQEFTLTKATPAKLITKAHI NMQNYADLKKASQIKENTMYDFEFQLQPTYYRIPAGSQLALIIYSTDQAMTKRPLESEEY KIDLTKCSISFQQK >gi|311091424|gb|AEKJ01000023.1| GENE 60 61449 - 63983 2649 844 aa, chain + ## HITS:1 COG:L102360 KEGG:ns NR:ns ## COG: L102360 COG0308 # Protein_GI_number: 15672287 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Lactococcus lactis # 5 842 4 842 846 834 50.0 0 MGKNKRLFDLFVPEHYDIFLDVNREHKTISGVSTITGEAKANQIQLNQKYLTVEDVTVDG KKVEFNYNDKDELITISSDKIGKIKLVVTYNAKLTDTMMGIYPSYYEVDGVKKQLVGTQF ETTFARQAFPCVDEPEAKATFNLAVKYDEKDGETIISNEPEFKCENGIHYFKETVRMSTY LVAFVFGDMQKKLTKTKSGVEIGVFATKAHKANELDFALDIAKRSIEFYEDFYGTPYPLE HSYQVALPDFSAGAMENWGCVTYREAYLLVDPDNTSLDIKQLVATVIAHELAHQWFGDLV TMKWWDNLWLNESFANMMEYVAVDALEPSWKIWETFQTMETAAALRRDATDGVQSVHIMV NDPAEIDSIFDSAIVYAKGARLLVMVRALLGDDALRQGLKNYFAEYKYGNAQGQDLWEYL GQASGLNIGDIMDSWLEQPGYPVVRAGIEDGNLVLSQKQFFIGTGEDQGRLWQIPLNSNY LQVPKIMKDEKMIIGNYEELRAKNGVAFRLNVGNNSHFIVKYDQQLLDDILSEMDHLNNI DKLQLLQDLGLLAESQEISYADVLPLLVKEAESTSNIVNSKLYGTLAKIKIFATPDSAEE AAIKQFSKKLSESNAERLGVEPHAEESIDDNLTRPLILSASLYGDNPVIIAKLHELYLAN ADKLADLNSDIRYFVLLNEIKNFENKDLFNTLFEKYAKEVDQNYKRDICLALTSVKNPDL LQLLIDKFKDASVIKPQDLLRWVAGILRNNHGQQKAWDWMRQEWPWLDKTVGGDMSFTSY ISVVASTFDTPERLAEFKEFFDPKINVSGLTREIKMDTLVIENKVALIAKDKVAVNKAIK ALLG >gi|311091424|gb|AEKJ01000023.1| GENE 61 64296 - 64457 268 53 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116095596|gb|ABJ60748.1| Ribosomal protein L33 [Lactobacillus gasseri ATCC 33323] # 1 53 1 53 53 107 92 3e-22 MVEQMAEHIILECTECGDRSYLSEKNKRKHPERLSLKKYCPVERKTTLHRETK >gi|311091424|gb|AEKJ01000023.1| GENE 62 64514 - 65065 480 183 aa, chain + ## HITS:1 COG:BS_yqgN KEGG:ns NR:ns ## COG: BS_yqgN COG0212 # Protein_GI_number: 16079545 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Bacillus subtilis # 5 181 2 178 187 104 34.0 9e-23 MLINKNEFRKQQLAKLRGFSQSYQKLQEDQFLQEKLIATSDFKNSVSIGITISTMDEIDT KLIINTAWQFNKQVFIPRCLPGRRMEFTQITDYNRLTKNKFGILENWQSQSTINNEPDII IVPGLAFKSDGYRLGFGGGYYDRFLAEHDLMSISMVGSLRLIEQSCWSINDYDIPVKKLI TIE >gi|311091424|gb|AEKJ01000023.1| GENE 63 65229 - 65777 484 182 aa, chain + ## HITS:1 COG:lin1374_1 KEGG:ns NR:ns ## COG: lin1374_1 COG0705 # Protein_GI_number: 16800442 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Listeria innocua # 11 133 226 345 345 94 41.0 1e-19 MNNIAVVTKLQFWRLFTAQFIHAGFFHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGV GGNLLSFALGQDNVISCGASTAVFGLMGSVLALYFLNNDNIIAIIIGRQAFLLLICNIVV DFFMPSVDIIGHIGGTITGFLLTIILGSIFFKDAPSKIRVLFCVIFIIYLVYCLRQGMVI NL >gi|311091424|gb|AEKJ01000023.1| GENE 64 65777 - 65995 241 72 aa, chain + ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 66 1 66 67 70 54.0 6e-13 MKNLYDVQQLLKKFNILVYVGKRKWDIELMALELDNLHKAGVISNKNYMTAKLILNHEHE IEVAKESGQCKD >gi|311091424|gb|AEKJ01000023.1| GENE 65 66030 - 66431 440 133 aa, chain + ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 37 130 32 125 126 89 46.0 2e-18 MDKVLIILNVLLTVIILALAVNWLWLRWQAKRLGGKLTQKQFEEGKRKAQIIDLRTKDAF KNKHILGARSLPFSMIKYQYSEIRSDLPVYLYSDSLMINIRVAKFLNKKGYHKVYWLEDA FAKWEGQTKTSKY >gi|311091424|gb|AEKJ01000023.1| GENE 66 66486 - 66665 267 59 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1381 NR:ns ## KEGG: LGAS_1381 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 58 17 74 75 77 68.0 2e-13 MSKKFGTGVATGILTTLGALAVGLFTYKKKVLDPEDKEDSRIADNRRKANRKSFSAHQS >gi|311091424|gb|AEKJ01000023.1| GENE 67 66740 - 67675 1027 311 aa, chain + ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 2 307 3 308 314 229 41.0 4e-60 MQKIIVIVGPTGIGKTELAIKLAQKLNAEIISGDSMQIYQEVNIGTAKPTFAERAAVKHY LVDQQSIFTEYSVKEFVSQASKAIDEITAKGKIPLVVGGTGFYINALINKLQLGERESYN DSVDSKWLELLKSEGEHALWQKLNEKDPITAAKIPYQNHRRVLRALSVISRTGKLFSDQQ VDIEPRYDALIIGLNSDRQQVYERINNRIDKMMASGLLTEAEMIYHNLDKCHQVVQAIGY KEFFPYFKHEADLSYCVDKLKQASRKYAKRQITYFRHQLCVKWLDPLKDDHILDDMLILS NNFIHKKSKKY >gi|311091424|gb|AEKJ01000023.1| GENE 68 67780 - 69117 1297 445 aa, chain + ## HITS:1 COG:SA1150 KEGG:ns NR:ns ## COG: SA1150 COG0174 # Protein_GI_number: 15926892 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Staphylococcus aureus N315 # 2 443 3 443 446 538 57.0 1e-152 MKRILTADDIKMSVKDNDVCFLRLAFTDINGTMKNVEVPTSQLDKVLANEIRFDGSSIDG FVRIEESDMVLYPDLSTWMVLPWQDGTSGRIGRLTCSVHKVDGTPFEGDPRNNLKRILNE MKSMGYTDFEIGFEAEFHLFKLDENGGWTTNVCDHASYFDMTDSDEGAKCRREIVETLEG MDFEVEAAHHEVGNGQQEIDFKFDDALTTADRVQTFKMVVRTVAKKHGLCATFMAKPLEG EAGNGMHTNMSIFKDKRNIFYDANGKYGLSNEALYFLNGILEHARAITAIGNPTVNSYKR LIPGYEAPVYIAWANKNRSPLVRIPAAEEVTTRLELRSADPTANPYLLLAATLKAGLNGI KEAKMPMEPVTSNVFEMSEEKRKELGIKPLPSTLHNAIKAFKADKLIQEALGEHLTKSFI DSKELEWARYTQSVSEWERQRYINY >gi|311091424|gb|AEKJ01000023.1| GENE 69 69247 - 70395 1208 382 aa, chain + ## HITS:1 COG:L157472 KEGG:ns NR:ns ## COG: L157472 COG0477 # Protein_GI_number: 15672136 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 4 368 11 381 393 101 24.0 3e-21 MDVILVMAASFLFMFSVMFVTPLINGYALSLGADSILAGIITGSMSIVSIFLRPIAGNLV DLYSKYCLSLIGGILILIGVSGYWLVNTSGLLILFRLINGTGFVLATICMTTWLAFLVPR RFVGEAMGFYGLMNALAMAVAPLIAINSYKVIGYRYSMMIASLAAVIMLIMIKFVKNHAI PQNKLSLKNIKHIRIIQKDTIPVALLMLFFSIPYFATQADLVEYVAMRKLSVSVGYFFLI YALSLLIIRIWLKRFFDTIAFGFWFWLSLIAMIIFLISMAFMKNNFIMLIAAVALSIGYG VIYSINQTTALLLSPLDQQGLASSTVYLGLDLGMASAPILGGIIASTIPHFYFYPIMLIM VPFVLVIYFIYRKKLNGAIQNH >gi|311091424|gb|AEKJ01000023.1| GENE 70 70435 - 71388 983 317 aa, chain + ## HITS:1 COG:L64737 KEGG:ns NR:ns ## COG: L64737 COG1125 # Protein_GI_number: 15672829 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Lactococcus lactis # 1 257 1 260 305 149 34.0 6e-36 MIEYQNVSKKINRKTSLKNGSLNINNGDLLVIVGSNDSCKKIIIRLLNRLIEADEGDIWF NHKKITDYTIKDLRSKISYVSTQANLFNNLNIYQNLTISLDKNISGQDKQTIANTLLELI DMDNQCLNMKPHELTYFEQKKISLARAFAINPQVVLLDDSFDEMDKISQIKLHELLVRLK KHFHTTILMTTDDIADALKLASSIVIVNGSKIEQVGTARDISQHPATLFVKQLLENNHIG VSFDLETLLKSELGVNPRYYPKTDMLVRYHVYNFKDLVKDCSNHPDSLFIAETDFGEFLI EPKRVWNFLLKRLSTND >gi|311091424|gb|AEKJ01000023.1| GENE 71 71381 - 72889 939 502 aa, chain + ## HITS:1 COG:SP1860_2 KEGG:ns NR:ns ## COG: SP1860_2 COG1732 # Protein_GI_number: 15901688 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 205 502 6 297 299 170 34.0 8e-42 MIDNILNLKQTSIVLNFLMDELTILFVSFVVSSLLALLLHKCARLTKVINWLFKLILVVP IFLLIAWIFIKHNIVLTIYLYWIIGSAFATCVLFPVINNAFTKINPELKTTAVALGLSKK KILFKIELPLVIADIIGGFKKIVFYSSIWLLIINLISIRNCNQISLIHFSKIQCNIAIVL TLSVLLLNFIFCLVKLFNAKFQWMFLIIVLLFGIVSLGAYSLNNIKTVANSAKSEQIIIA SKDDSQFDIIANMYKILLEKNKKYHVTFSRRKDDRQILKELRNGNIDIYPEETRKVFSLI DNSDKKFANIDELYRYTRDILYKQDLIYMTPMAYHNNYVLIADKEFAKQNKITKISDLQK YKSKLVVGMFKDFADSSNGYEGLKDVYKLDFPKMSVTTADQCYEKLRKRQVNLIAATSND PEIKKNNLLILNDDKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEMIQLETR VKLEHKNAAKVAKAFLQRNKLI >gi|311091424|gb|AEKJ01000023.1| GENE 72 73019 - 74944 1763 641 aa, chain + ## HITS:1 COG:BS_amyX KEGG:ns NR:ns ## COG: BS_amyX COG1523 # Protein_GI_number: 16080045 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Bacillus subtilis # 12 579 91 641 718 417 37.0 1e-116 MEKHVLKKFYGLTSPEFDRENYYGGSDLGLSFEKDKVIFKIWSPIADTVTVRLYHDLNNN SISDRELTLDKENAGVWTCMISSKYIGWAYDYKFTFCDGTVTYANDPYAVAATINGVRSV IIDIAKIEVNDLVKLPSFTNPTDAIIYETSVRDITADKNGGFKYPGLFLGLSEKNTHTAQ GYATGLSYLKSLGITHVQLLPMFDFGSLDEADPNHGYNWGYDPINYNVPEGTYSTDPADP VCRIKEMKYMVNELHRAGIRVVMDVVYNHVFDIHKQAFEQVVPGYYFKHDEKGNMIDDIG MGNAIASQRLMVRKYIVDSIIFWIKNYHIDGFRFDTMGVLDVDTMNLVVEEAHKIDPGIL IYGEGWNIKPIERPLESGHDHASLMPNVGFFGENLRNAVIGESGEYADYRPGLVQGNLAE VGASGKKYYEQDVCEFVKGFMGSNGFHTYIAPHQLINYSTCHDNFTLYDALIAHLPNASR SEIIKRAEMSLAMILLAEGVPLIHSGQECLRTKNGNVNSYNAPIEENKIDWLRVEQNQDL IEFFKKLVNIRKKYSIFRIDDYQEISCIVRPYVLKQNGIFAFEYTMPTCKLYVLFNIKNE TQLFNQIDLTGAKVILSNDNDLLLSQHSTLGALSTSIVIVK >gi|311091424|gb|AEKJ01000023.1| GENE 73 74950 - 77208 1801 752 aa, chain - ## HITS:1 COG:Ta1045 KEGG:ns NR:ns ## COG: Ta1045 COG0474 # Protein_GI_number: 16082076 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Thermoplasma acidophilum # 5 744 21 770 780 395 32.0 1e-109 MEIKGLTQKEADKRLKIDGLNDVPDPKYNFWQAFASKLWNISAWILEAALILECFLGKWI QSFFVLLMLLFAAFNGATQKKKSRKVLNMIAHKLNPLVIVKRDNIWKQIDAKFLVIGDLI SLKKGDILGADAKLVQGNLQVDQSAISGESNLIDKKETETIFGGSIVIKGEALATIIATG KNSRNGKTINLINTSAAPGHLQKLLTEIIYYLCLLDGILTLILIFFAIIHGKNILDMLPF LAMMFIASIPVAMPSTFALSNSFEATKLSQEGVLTADLTGIQDAANLNLLLLDKTGTITE NKTSVFKWYNLCQKADKEVLSYVSATLDEKNSGIIDDAIFTFLKQKNIKLIKADKYISFT SDKGYSQAQVGNLDLKLGSFKQLSQLDTTSIEKIGQISFENGRSVAFLINNKLAGIFILK DTIRPDAITTLQEIKNRGIKAIMLTGDNQKTAQSIAAQVGLQGKVISINNFTENLNIHEL AGIADVLPEDKLFIVKLLQQKGFIVGMTGDGVNDAPALKQAEVGIAMHNATDIAKKSSKM VLLQDGLSPIIKILDAGHRVYHRMTTWSLTKLSRTAELTMLLTIGFICLNYIPMALNAMV IYTIMNNMVTMMIGTDNTYVSYHPENWDILKLAKRAFSLASGFMLSGLALLYFCTQKQIA PAKIGAIIYIYLVFSAMLLVLITRSKTYFWKSLPSKYVYITQLINIVITLTITAIGLGIQ QLALSEIGLAILFSLLAAIIINVIYKKITVKN >gi|311091424|gb|AEKJ01000023.1| GENE 74 77514 - 78068 399 184 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1239 NR:ns ## KEGG: LDBND_1239 # Name: not_defined # Def: membrane-associated phospholipid phosphatase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 30 184 38 192 195 79 31.0 5e-14 MELFILILVFLHLVMLNKMQNMDNGTKITKDVTVKFKLLWKIITYVFSPIDIMLACIFVS TILWINGNSKLACWFLLSLILTDVVGIALKITIKQKRPINSICHRKGYSFPSGHVLSAMT LIYLLIFTFNLEKNIILFCIFITILLGIISSRIFLRQHHLLDVIASLVLSRICFLIAIFI WRIL >gi|311091424|gb|AEKJ01000023.1| GENE 75 78213 - 79499 1948 428 aa, chain + ## HITS:1 COG:L0008 KEGG:ns NR:ns ## COG: L0008 COG0148 # Protein_GI_number: 15672258 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Lactococcus lactis # 6 422 5 421 422 505 62.0 1e-143 MLKSVIENVHGREIFDSRGNPTVEAQVTLSNGVVAIAEVPSGASTGENEAVELRDGDSRL GGKGVMKAVNNINTEINAALKGMDPYNQALIDQTMIDLDGTPNKGRLGANAILGVSMAVA RAAALDCHQPLYRYLGGTDLEMPQTFHNVINGGEHADNGIDIQEFMITPVKKTSFRDGFE KIVNTYHTLKKVLEEMGYETGLGDEGGFAPNMKNSEEALKALHEAIIRAGYKPGEDIAIA CDCAASYFYNKEDGKYHLEGKVLDDEELAEYYDKLLAEFPELISMEDPYDENDVEGMVKF TQTHKDRLQIVLDDFICTNPKLLNKAIHEGAGNASLIKLNQIGSVTETLETVRLSRKNGY NTMISHRSGETGDTFIADFAVAVNGGQLKTGAPARSERVEKYNQLLRIEEELGAGERLAF FPDNVDLD >gi|311091424|gb|AEKJ01000023.1| GENE 76 79635 - 81506 1853 623 aa, chain + ## HITS:1 COG:BS_amyX KEGG:ns NR:ns ## COG: BS_amyX COG1523 # Protein_GI_number: 16080045 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Bacillus subtilis # 7 599 91 689 718 484 41.0 1e-136 MLSIDEIQSPEFDMKYFYDVDDLGATFYDDKIKLRLWAPTAEKVCVNLFANYQSDAPKLA SLEMAKSEKGTWLIFLDKKYYGKAYTYCLTFDNFTTETVDPYIQMVTINGKYGVLSDANK IKPENFDRMSPFSKATDAIIYETSVRDFTIDVNSGVKNKGKFLGMIESDTETPLGLSSGL DYLKKLGITHVQFMPIYDFGSIDESIPDAYNWGYDPANYNVPEGSFASDPADPASRIMEM KQMIKGLHDAGLRVSMDVVYNHVYIRRMHALEKTVPGYFFQYRDGKPTNGSACRNDVASE RLMCRKYIYDSVMYWAKEYKLDGFRFDLMGILDVDTMNQIKRGLNEIDPSILVYGEGWDM RQTNHEIGAGQYNANKLPGISFFSDDFRDSIRGSEFAGVEPGLVFDMDHYGYYRASRMFI AGFLGGKFYSSLSNHPYQSPMQTINYVECHDNYTLFDKLKLLMPNIDEKEIHRRAKLALA MAILAEGIPFINSGQEAFRTKQGDPNSYSSGDQINKIDWNRMSKNKDDVLYLSELLKIRK KYDVFRLDDYSEIEKRIKLLIAGQNGLFAFSYDQNIIVIFNVFNDQKTNLGLDMTGFKKI FSSDADQDCHTVAPLSVNVFVRK >gi|311091424|gb|AEKJ01000023.1| GENE 77 81524 - 83146 1546 540 aa, chain + ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 540 1 538 540 687 61.0 0 MITVNNLSLNMAGHTLYEDVNLKFTPGNCYGIIGANGAGKSTFLKLLEGKIEPTTGSITI GANERISSLNQDHFAFEEFTVMETVIQGHKQLYDVMKQKDALYAKADFSDADGVLAAELE TKFAELDGWNAEADSAKLLQSLGVAEELHQTMMSELPESVKVKVLLAQALFGNPDILLLD EPTNGLDVHTIEWLENFLANYENIVMVVSHDRHFLNQVCTQMCDVDRGKIQLYVGNYDFW YESSKLATELANNQNAKKEEKIKELQTFIARFSANASKSKQATSRKKQLEKITLDDIKPS SRKYPYIKFDMHRELGNDLVKVENVSYSVDGRKILDNVTFSVRPGDKVAFISRNTVAISI LLQIIAGKLEPDTGSVTWGQTTAFNYLSRDLNANFNDSELTILDWLRQYASKEQEDNTFL RGFLGRMLFSGDEIDKKIKVLSGGEKVRCQLSRLMLQPSNVLILDDPTNHLDLESITALN EALKAYSGSILFTSHDHEFIQTIANHIVEVGSKGIVSRQDITYDEFIDHEIVQQQIKDIY >gi|311091424|gb|AEKJ01000023.1| GENE 78 83527 - 84576 1104 349 aa, chain + ## HITS:1 COG:L121289 KEGG:ns NR:ns ## COG: L121289 COG1135 # Protein_GI_number: 15672304 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Lactococcus lactis # 1 343 1 362 368 301 50.0 8e-82 MAKQISLKDISVIFDGNVAVDKVSLQVEKGDIYGVIGFSGAGKSTLVRTINLLQKPTSGS ITVTNDILFEDGKQKIDAKQLQEKRRKIGMIFQHFNLLNEAKVIDNVAFALKHSQLSEKE IHTKCLHLLELVGLQDKANFYPAQLSGGQQQRVAIARALANDPDILISDEATSALDPKTT NQILDLLYELNQKLQLTIVLITHEMDAVKRIANKVAVMEDGKLIENGNLLDVFLHPKRKL TKQFVGGALEVQHILNTYSLNEIAPNDQLYQLVYGIDDVTKSVVADLDEKVGTKASILYG NVEVLGGKLIGTLAILLKLDANKEREALQFLRDRNVIVTKLDKDVLRNV >gi|311091424|gb|AEKJ01000023.1| GENE 79 84569 - 85270 830 233 aa, chain + ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 9 231 9 231 231 253 69.0 2e-67 MFNILEKYLPNVVAQGWSGDAGWQTAILQTLYMTFWSALFGGLLGLVFGLGLVLTRQKGI LENKLLFSIIDKTVSVFRAVPFIILLAFVAPFTKALVHTQIGETAALVPLTLGVFPFFAR QVQVALESVDLGKIEAAQALGATTLDLIFDVYLKESRSELIRVSTVTLISLVGLTAMAGA VGAGGLGNTAISYGYNRFNNDVTFVATILVLLLVLIIQLVGDYLAVKFNHQER >gi|311091424|gb|AEKJ01000023.1| GENE 80 85393 - 86772 1187 459 aa, chain + ## HITS:1 COG:Cj1165c KEGG:ns NR:ns ## COG: Cj1165c COG3610 # Protein_GI_number: 15792489 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 319 437 5 123 164 61 34.0 3e-09 MSKKNSNMKHESCSSNKCHTLSHHHHMRIRWHEFFTSKSSTLAKEATLSERSVIVGHVGM MLLSFGTGAWRVRSAMNTMARNLNMTCSADIGLVSLEYTCVDEFGHSYTQALSLPSTGVN TAKLNKMEAFVSQFEKDHGNWTIEKIHNTLEEITKQKASYQPWQVALASGIACGGFTFLL GGGIFEVIYAFFGAMAGNYARRKMIDKRMTVLANVIVGVLVACCVYALAFYISNLFMHVS ARHLDGYIGAMLFVIPGFPFITSGLDISKVDMRSGLERMAFASMIIVVATAVGCIIALVL HLHPQDFLPLNLEPVILTILRLFASFCGVFGFSIMFNTEVKMAMLAAVFGAIANTMRLSL VDFVNWPPALAAFLGAFLAGILASIVRKKIGYPRIALTVPAIVIMVPGLYMYRAMFNLTL ASFVQGEIWSIKALLIVISLPLGLITARILTDPKWRHAG >gi|311091424|gb|AEKJ01000023.1| GENE 81 86827 - 87333 510 168 aa, chain - ## HITS:1 COG:SP0985 KEGG:ns NR:ns ## COG: SP0985 COG2606 # Protein_GI_number: 15900860 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 6 167 3 157 160 134 45.0 8e-32 MSKKNKKQNLKKTLVEKILDQHKIPYSQLQFNVTQHGDVKQIDTTILAEDEHLVYKTLVC EGNQNSPIIAVVPVTEHLSMKKLATISNNKKCELLPLKKLLSTTGYVHGANTPIGIYEKF HYPIFLDNSMKNEPLVAVSSGEVGRSVKLNPTDLATLTNATFCDLLDK >gi|311091424|gb|AEKJ01000023.1| GENE 82 87395 - 88327 798 310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227890128|ref|ZP_04007933.1| ribosomal protein L11 methyltransferase [Lactobacillus johnsonii ATCC 33200] # 1 310 1 315 315 311 49 9e-84 MQLNGVQIMCSSELEEPLTYFLQSDLAAKGIEVRRRSDFDDVLTANILAQDANEIPDDME LTAYFAIGIEISDIISQIKAKLLELKNYGFKTDNVEFKVIQVCDKMWQNQWEKFYHRVDF SRSLAIVPEWECPKPLNPHQIVIKMNPKQAFGTGTHITTQLMLMVMERVLLSEMSVLDVG TGSGILSIVASKFGASNVCATDISDDAIASAKKNLALNDIDNVELKQANLLTGVKGKYDL ILANMLAEILYQLIPHLSDHLARNGSVIMSGIDCEQLSRIEKLLSENGFTVNLKIQEKRW FCILVSQKSN >gi|311091424|gb|AEKJ01000023.1| GENE 83 88364 - 88744 177 126 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0856 NR:ns ## KEGG: LGAS_0856 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 16 126 16 126 126 111 53.0 8e-24 MKKVLHKISEIISVEFWHKLNQKSYMSIVFLAMFCIILSLLCSLAHLRKVWLVALIFLIF NSYISFQIGCLIDFHKLSKKWLLFFPIIFALMVTIHFAKYNYFFCLIYLCFELFGLWHND LYQVRK >gi|311091424|gb|AEKJ01000023.1| GENE 84 88754 - 89086 537 110 aa, chain + ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 110 1 110 738 136 57.0 8e-33 MSKYVEMTHDEVLAACKKYMNEEHVAFVEKAYAFAKDAHEGQFRESGQPYIIHPTQVAGT LASLGLDPDTVAAGYLHDTVEDTPVTNEDIKKEFGKDVAFIVEGVTKLKK >gi|311091424|gb|AEKJ01000023.1| GENE 85 89149 - 91005 2084 618 aa, chain + ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 618 131 738 738 696 55.0 0 MAKDLRVIMVKLADRLHNMHTLDHLRPDKQRRIADETLDIYAPLADRLGIGTIKWELEDM SLHYLNPQQYYRIVNLMQSKRSERERYISSAISTLKANLDDLGIKYEIFGRPKHIYSIYK KMVNKHKEFSEIYDLLAVRVIVKTVRDCYAVLGAVHTKWTPMPGRFKDYIAVPKANGYQS LHTTIIGPGGKPLEIQIRTEKMHQIAEYGVAAHWAYKEGVQTAVAETPSSKKIDMFREIL ELQDETKDSHEFMNSVKTDIFSDRVYVFTPKGDVYELPKGSVPLDFGYMIHSEVGAHSVG AKVNDKIVPLDYQLKNGDVVEMLTQSSATPSRDWIKLVKTSSARNKIKRFFKSEDREKNI EKGIELVEQELQTRGLSSKTYMDKSHVNIVIEHFNYHNEEELFAAAGFGEISPASIVNRL TQDLRKREENERKRQLEAEIMNAGQQKINPVSEKHESSNGVMYIKHNNGVMIQGVSDLML RLAKCCNPVPGDEIVGYVTKGRGVTVHRADCRNINGAAKSQGRLIEVAWENVGENNTAEN FNADIEIYGFSRSKFLSDVINALNSKTKNIINISGKTDNNNMAHIYATVSVRDTAHLEEI MGRLRDIANVYEVKRSVN >gi|311091424|gb|AEKJ01000023.1| GENE 86 91005 - 91442 509 145 aa, chain + ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 144 1 143 147 140 54.0 6e-34 MRVVVQRVLQAKVEIDQAEISSIDNGMLLLVGIGMSDTRDIVKKMATKISKIRIFEDNCG KTNLNIHEVNGKILSVSQFTLLADTKKGNRPSFVNAMKPPMSLDLFNYFNECLVNDGNVV ERGQFGADMQVSLINDGPMTIVLDL >gi|311091424|gb|AEKJ01000023.1| GENE 87 91689 - 92975 1341 428 aa, chain + ## HITS:1 COG:SPy2157 KEGG:ns NR:ns ## COG: SPy2157 COG0124 # Protein_GI_number: 15675899 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 424 426 440 53.0 1e-123 MRVQKPKGTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDV VEKEMYDFMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYERPQA GRQREFHQIGVESFGSDNALADVETIVLAHDLLSTLGIKKYELHINSLGNEAVRTAYRQA LVDYFTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIEFVSNAPRIRDYLDDESKKNFEFI IKTLSELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNHLVEEFDG PKTPAVGFGIGEERLMLVLKAQNPELLTDSNIDFYITNIGEETITKTVEIARELRKQGLK VQYDVEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIKRLSDGKSYAFNMDEIANVN DLLQKLER >gi|311091424|gb|AEKJ01000023.1| GENE 88 92978 - 94816 2208 612 aa, chain + ## HITS:1 COG:L0346 KEGG:ns NR:ns ## COG: L0346 COG0173 # Protein_GI_number: 15673947 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Lactococcus lactis # 4 586 3 588 590 653 56.0 0 MEMRTDYCGNITSKYENQNVTIYGWVQRVRKLGKLIFIDLRDREGIVQVVVNQDSGDALM DVAQKLGNEYVVEVQGKVVRRSNVNKEIKTGEVEINATNIVVLNESKNPPFEIKDDVTAA EQTRLKYRYLDLRRPSLQHSIILRSKILHAIHDYFDQEGFVYIETPTLGKSTPEGARDYL VPSRVYPGSFYALPQSPQLFKQLLMGAGFDKYYQIARCYRDEDLRGDRQPEFTQVDLETS FLDEKGVQTYTEGLLKKVMKDVMGIDIVTPIKRITWDEAMNKYGSDKPDIRYDMHLHDLS DIFKDSEFKVFADTLSNGGVIKGIAVKGGAEAYSRKKIEEKQEYIKRYHAKGIAWVKYEN GEFTGPIARFLTENQKRDLISEFELTGGELITIIADIWKVVTDSLDYLRRTFAKETGIIP QHEFKFAWVVDWPLFEYDEGDQRWIAAHHPFTMPDDKGIELLETEPHKAHARSYDIVLNG YELGGGSIRIHKREIQEKMFKALGFTKERAYEQFGFLLEALDMGFPPHAGLAIGLDRFAM LLAEKDNIRDVIAFPKNASASEPMMHSPAPVADKQLADLGINVMSEHVEANAEIEARLKK EANDLADKNRTW >gi|311091424|gb|AEKJ01000023.1| GENE 89 94897 - 95469 656 190 aa, chain + ## HITS:1 COG:NMB1796 KEGG:ns NR:ns ## COG: NMB1796 COG0431 # Protein_GI_number: 15677635 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Neisseria meningitidis MC58 # 1 189 3 190 190 234 62.0 9e-62 MKKDVVVLVGSLREQSYARKIAKNAIDMFSDEFYAEIVEIRDLPLYDADYDDINNTNKPL PESYVQFRKKIKDAAGVLFVTSENNRTIPACLKNAVDVASKPKGDVAWTNTPVAVISHSV GAMGGYSANKNLRLALSYFTMPTVQQPEVFLGHSPELLDESGKFNNEATFNFVKKYIEQF EKLIKDNPKD >gi|311091424|gb|AEKJ01000023.1| GENE 90 95593 - 96471 749 292 aa, chain + ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 10 288 32 310 313 260 44.0 2e-69 MDHFERLSRRHNFISKLSAAFFYALAVAVALNFFWHPGKIYASGVTGFSQVLESLSSRYL PFTLTTSSMYFVLNIPLFILGWLKIGKKFTLFTIIAVILASIMMKLIAPIKLSYDPIICA IFGGVVNGVGTGIALKSGISTGGIDVLGIILRRKTGKSFGQINIFFNLIIVICAGFVFGW TRALYTALNIFINGRVIDAVYTQHQKMQVIIVTEHPTEIVEQIQEKMHRGITILHDAEGA YSHNEKTVLITIIDRYDMYDIYNIVSKNDPYAFMSMSEVSKIYGRFIEQKPV >gi|311091424|gb|AEKJ01000023.1| GENE 91 96523 - 97356 959 277 aa, chain - ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 13 268 12 266 270 226 42.0 5e-59 MCNKDKVEVNLIIISDAVGDTAFNMVQAGAVQYPNATFNYRRYPFITDTKKLENVLNEIV QYKNVLIAFTLLNEEMQLMIIKFAREHNMKHVDLLSGIIDKIHEITKEDPKHVIGAVHHM GQRYFDRISAMEFAVMYDDGKDPKGFLEADVVLLGVSRTSKTPLSLFLANRNIKVANLPL VPQTHIPDEIYKVDPKKIIGLTNDPEVLNEIRRQRMISYGLNPDTTYSNMDSINAELNSA KQLYDKLGCYVINVAHRSIEETAALIMSHLGIDNFSK >gi|311091424|gb|AEKJ01000023.1| GENE 92 97558 - 97734 292 58 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 [Lactobacillus acidophilus NCFM] # 1 58 1 58 58 117 100 4e-25 MAKTIVHENESIDDALRRFKRSVSRSGTLQEYRKREFYEKPSVRRKLKSEAARKRRHY >gi|311091424|gb|AEKJ01000023.1| GENE 93 97831 - 98274 515 147 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 147 1 147 147 202 69 6e-51 MTLIESLMKDMKAAMKAQDKETLTTIRSLKAAVMYYKIKQGHELTPEDELTVLASAIKMR KESLEEFKKGGREDLVEQTEHELAIIAKYMPKQLSETELEQVIIETISEVGASGKQDFGK VMKVLMPKIKGKADGKLASEILKKKLS >gi|311091424|gb|AEKJ01000023.1| GENE 94 98294 - 99256 1048 320 aa, chain + ## HITS:1 COG:lin1504 KEGG:ns NR:ns ## COG: lin1504 COG1702 # Protein_GI_number: 16800572 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Listeria innocua # 12 319 12 319 319 375 60.0 1e-104 MISNNVVTFTPSDPKNIVNLVGINDANLKLLEETYDISIVENGNTIQLSGDESTVASAVA VLNALDKVITDGIMISATDVISASKMAEKGTLEYFGELYNQVLIRDSKKRPIRVKNMGQK RYIDAIRQYDVVFGMGPAGTGKTFLAVVMAISAFKKGEVSRIIVTRPAVEAGESLGFLPG DLKEKVDPYLRPIYDSLFTILGVETTSRLMDRGLIEVAPLAYMRGRTLDDAFVILDEAQN TTHAQMKMFLTRLGFNSKMVVNGDQTQIDLPGRARSGLLESEKILANVEQVKFIKFSFND VVRHPVVAKIVKAYEEEENR >gi|311091424|gb|AEKJ01000023.1| GENE 95 99253 - 99780 646 175 aa, chain + ## HITS:1 COG:SA1399 KEGG:ns NR:ns ## COG: SA1399 COG0319 # Protein_GI_number: 15927150 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 6 161 4 152 155 101 39.0 6e-22 MTEIDISFNDEVDFFSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVDINKIHEINK NYRGKDRPTDVISFAIEDGTDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEYETGFY REFGYTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLEEYGLPLHPDQETHGKQIH >gi|311091424|gb|AEKJ01000023.1| GENE 96 99796 - 100698 948 300 aa, chain + ## HITS:1 COG:L0155 KEGG:ns NR:ns ## COG: L0155 COG1159 # Protein_GI_number: 15672333 # Func_class: R General function prediction only # Function: GTPase # Organism: Lactococcus lactis # 1 299 1 301 303 335 54.0 7e-92 MQNKEYKSGFVALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIF IDTPGIHKPKNNLDDFMDKSSYSALNDVEAVLFMVDPEPAGKGDMFIIDLLKNVACPVFL IINKIDTVHPDKLLPIIDSYNKLVKFAEIIPISARQGNNIDDLIKTLVKYLPQGPHYYDS EQLTDKPEYFIVAELIREQILQLTHAEVPHSAAVLVDKMSDFDKGKLQIFATIFVEKEGQ KGIIIGKNGQMLKNIGMHSRVEIEKLLGDKVNLHLWIKVHKNWRSDPVFLKKIGYNVKDL >gi|311091424|gb|AEKJ01000023.1| GENE 97 100702 - 101448 522 248 aa, chain + ## HITS:1 COG:BS_yqxN KEGG:ns NR:ns ## COG: BS_yqxN COG1381 # Protein_GI_number: 16079582 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Bacillus subtilis # 5 247 2 243 255 133 28.0 3e-31 MSKELIEVSGLVFKQKKYKDFDVLSKIMTAENGIFTLLIKGGLKPKSRLLPATINFSYGN YLINTNYCGLSVLRNYKVVHQLEHIYFDFKGNAYANYLLDLVDHAYADYQPLGKNYYLVF NALVKINEGIDNEIICQMVELKLLSAFGTMPEFRHCVFCDASQGIFDFSLQLGGIVCKNH FGSANTRMCLDAKTMGLIRTLALIDIQQLGQINISDNLKQQSRKFIDILYGQYLDLHLKT KKYLKEVL >gi|311091424|gb|AEKJ01000023.1| GENE 98 101702 - 102607 1056 301 aa, chain + ## HITS:1 COG:SP1475 KEGG:ns NR:ns ## COG: SP1475 COG0752 # Protein_GI_number: 15901325 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 298 1 298 305 446 69.0 1e-125 MEEKLNVQNMIFKLEQFWASKGCMIMPSYDEQKGAGTMSPYTFLRAVGPEPWAACYVEPS RRPADGRYGNNPNRLYQHHQFQVVIKPSPKEIQQYYLDSLRILGIEPLEHDIRFVEDNWA NPSMGCAGVGWEVWLDGMEVSQFTYFQVVGELDVKPTMSEITYGVERLASYIQDVNSVFD LEWADGVIYRDIFKQPEYEHSKYAFEASNQAELLKFFDTFEATAKELLNQHLIHPAYDYI LKCSHTFNLLDARGAVSVTERAGYLARIRTLAHMAAKGFVEEREKRGFPLLKHQEESKKE D >gi|311091424|gb|AEKJ01000023.1| GENE 99 102609 - 104678 2173 689 aa, chain + ## HITS:1 COG:lin1495 KEGG:ns NR:ns ## COG: lin1495 COG0751 # Protein_GI_number: 16800563 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Listeria innocua # 1 689 1 688 688 606 44.0 1e-173 MTKDYLFEIGTEEMPAHVVAKSVKQLADRTGKFLKDNGLSFKNIKTFSTPRRLTILVQEL AEKQADIDEIKKGPSKKIALDKDGNWSKAAEGFVRGQNMSVDDIYFQKIKDVEYAYIHVK KEGKKATEILLGMDQIVKELAFPTKMRWGNYDLEFVRPIHWIVSLFGSEIIPVKILDIVA GRKTYGHRFLGESLVLATSDDYESALKSQFVIADANQRKNMILSQINSLCEKNNWQVKID SGLLEEVTNLVEYPTIFSGSFNEKYLNIPKEVLITSMKDNQRYFEVYDHEGTLINHFIAI RNGNSDYLDNVIAGNEKVLVARLDDAQFFYDEDKKYPLSHFVEKLSSVSFHDKIGSMAEK MLRVKLIGEYIGKKINLSSSELADFDRAADIYKFDLVTNMVGEFAELQGIMGTHYAELAG ERKAVSQAIKESYLPSSADGDLPTTKIGSLLSIADKLDTIISFFGAGMIPNSSNDPYALR RSAYGIVRILINQSWNISIEDALKDIIDLLKGKTVAKLPNDEATQAEISDFIINRVKQLL QVKKYSYDVIDTVLASNQQNVANILSIADILQENHDDSKFKKVVESLTRIANILKKADFS EAEQINPDLFENNSEKALYDKINLLLDKSLDVKTLYSEFVQLQPVIDEYFDSNMILDKNE AVKINRLSQLKLIDKLALEFGDLSKLVIK >gi|311091424|gb|AEKJ01000023.1| GENE 100 104697 - 106499 1510 600 aa, chain + ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 5 599 4 620 626 355 34.0 2e-97 MAGHIPSNLIDEVRSAVNIVDIISQYVSLTKKGKDYVGLCPFHQEKTPSFTVSESKQFFK CFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIYKKNPIKQIYSDAT EFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQDLLE QSGLFIKNEKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETPLFTK SKLLYHFSEAKHAVNAENHLILYEGYMDVIAAYKCGIKTGVASMGTSLTSQQVYMLRRVT PNIIINYDGDDPGQHAMERAIKLFNYPNMNLGIVSLPENLDPDEYVKKYGPEKYVNEVKA ATTSTEFLLQRMAKKYNLFNDRDKLDFINESIALIAKNDDPIEIDIYIQKLAQKLQVSVE SLKARLLREQRKIRTAINHQKQIQALYPADEVTPKQLDNVHDSSASFTEQKRLLFLFIHN DNARLYLLTKKFIFPNESYQQLADLWLSYLEKNPNPNISGFADFIPKDLQSIIVNMELTD MPYTFSEGEIDDQIASLIKQKTILEIQRLYDQIKVAQQKNDSQLIIQLTQKIIELKRKII >gi|311091424|gb|AEKJ01000023.1| GENE 101 106511 - 107659 1220 382 aa, chain + ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 24 382 16 374 374 463 73.0 1e-130 MAENNTTNNGNQNLQASKASTTTLSQVVKNIIKEVKTSKEIKEDDFVARMVKPYQLEGRA IDQLVQEFEDNGISIVDNDGNPSNLSLKKQKDVEKAELNDMTAPSSVRMNDPVRMYLKEI GRVPLLNADQEIDLAKRIENNDDEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNM GLMKAVDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQL LQDLGREPTPEEIGAEMDMSTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATS PEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLNDGRTRTLEEVGRVFGVTRERIRQI EAKALRKLRHPSRSNQLKDFLD >gi|311091424|gb|AEKJ01000023.1| GENE 102 107720 - 108403 784 227 aa, chain + ## HITS:1 COG:lin1490 KEGG:ns NR:ns ## COG: lin1490 COG2384 # Protein_GI_number: 16800558 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Listeria innocua # 1 223 6 234 234 154 36.0 1e-37 MEERLKQIASLVDDQARIADIGTDHAYLPIELVKDAKISFAIASDIAQGPLNNAKKDILA AGLVNQIETRLGSGLLTIHPEDKIDTIVMAGMGGTLMVNLLNASPTQYPTLILEPNVGEA NVRLWLMNNNYRILAEKIIETAGHIYEIIKAVKSTTAVPLTEMEINFGPVLMQNKNKVFY KKWSNQLLFQQKLLHNLKKAKVIDDLKVKQVTKLIMMIEEMIKDDES >gi|311091424|gb|AEKJ01000023.1| GENE 103 108390 - 109187 667 265 aa, chain + ## HITS:1 COG:SPy0931 KEGG:ns NR:ns ## COG: SPy0931 COG0327 # Protein_GI_number: 15674951 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 2 264 1 262 262 179 37.0 4e-45 MMKVKDIITILNKAFPEDIASKNDPVGLQLGSINNTVSKIMTTLDVRPEVVDEAVKNKVD LIISHHPLMFFPAKNLDFANPQNAMYAKLIANGITVYSIHTNSDKALHGSSEWQADQLEL HDIQPFCLDDDSIAIGRKGKLPEPMTAYKFAYYVKQKMNIKMVRLITANNEKLINSVAFI CGDGGKYWRQALIEGVDAFITSDIYYHVGHDIISSGLTVVDPGHYTEELFKYKIAEQLKT WLANADSSISIMVSKTNTNPFQDLF >gi|311091424|gb|AEKJ01000023.1| GENE 104 109207 - 110451 1230 414 aa, chain + ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 1 406 1 408 413 424 52.0 1e-118 MEYPTLLPRFLKYVKINSRSDENSQRFPSTEIEEKFQKIILNDLKELGLQCYYNQKSGCV IATIDSNVDYDVPTFGLLAHCDTADFESNNINPQITHNYDGVSKIKLGDTDFYLDPAIFP HLKKYKGQTIISTSGDTLLGGDDKCGVSELLTFAEYLVNHPEEKHGEIKLAFTPDEEIGT GASHFDVEDFGAKFAYTVDGEGPGKLDWGTFSAAQFSLDIQGIDVHPAQAKDKMINAIKL AIDFQNQLPQNEVPEKTAGEEGFYHLLKFEGTVDHAHLEYIIRDFKRDNLEKRKELVQNI VNKINDQFDQKRVVLKMADQYYNMADELKKNMEVVDLARNAYKALGLTINEDPVRGGTDG SQLTYMGLPCPNLFAGEENMHGRYEYTVLESMWLAVDVLRKINELHLKKYQKLI >gi|311091424|gb|AEKJ01000023.1| GENE 105 110762 - 111136 375 124 aa, chain + ## HITS:1 COG:BS_yhcF KEGG:ns NR:ns ## COG: BS_yhcF COG1725 # Protein_GI_number: 16077971 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 2 115 4 117 121 87 35.0 6e-18 MKFEDNLPIYYQIEQQLYYDIVLGKLQPGEKMPSVRQLALDFTVNINTAQHVLSNMQDKG IIYSKRGLGSFVTDDVNLILVLKDEIISKMFSDFLSKTKKIGLSNQDTIDKLQTFVLKEG PKNE >gi|311091424|gb|AEKJ01000023.1| GENE 106 111129 - 111818 188 229 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 5 213 12 228 318 77 27 5e-13 MSEILKISNLNYKKNNKILINNINLTVNKPEIIGLLGENGAGKTTLFRLIAGLGKGYTGS IAVAGETSIDKIKENISFNDKLDAFNLYTKLKEIKDFYAKFYKDFELEKFDNIISLLDID MSKRLGELSKGKKEGFIVALSIARTVKIYLLDEPFSGIDLMSRKKILQSIIKWLPQDATV FLSDHNIEEVHQIIDRIVLIKDKTIVADETAEKIRSNGESIEEFYLKFY >gi|311091424|gb|AEKJ01000023.1| GENE 107 111836 - 112558 579 240 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309803151|ref|ZP_07697248.1| ## NR: gi|309803151|ref|ZP_07697248.1| putative membrane protein [Lactobacillus iners LactinV 11V1-d] putative membrane protein [Lactobacillus iners LactinV 11V1-d] # 1 240 1 240 240 305 97.0 3e-81 MFNKLFFYLFKQKAKTVLYCLLLNIICTVVIALTATHKIDYLIIVFISTSFFMNLGFLVN CSVTASKFLKKQTYRLLPMKDGYLYLANTASDFLNGLLLIAIESIIGILIVHFISFNFSK VLIGSFKLSVNTMSIVLTTISILLLSSFMLYCMLITCLLLTKICMDFLPIVLQNIRKFIS VIIYIIMLLVFSRIIEYFKSLLYNENNQSTLVFFYIIGIIIIIGINYFIFNKYHEADVNN >gi|311091424|gb|AEKJ01000023.1| GENE 108 112665 - 113555 774 296 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0868_0084 NR:ns ## KEGG: HMPREF0868_0084 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 56 295 1 241 241 313 68.0 8e-84 MKNSKNFNLFLMDGEVTGRIKCTLSNWTGLAYKVPRSYLEKCKDRQDLKQSGVYFLFGTN DDGDNEVYIGQAGIRKNGEGVLFRVTEHLKDEIYFSDAVMLTTQNNSFGPTEISYLENKF TNMAIEIDRYQVRNENDPNPGNVTEEKESELEDFIEYSKMVLGVLGYKIFVPIVNKEWKK EDKTDDNEILYLSTKTKKSEKKINAKCQRTSEGFVVLKDSMIELIDSKSLPKSIKEMRDK CKANNEIIDGKITKNYLFNSPSYAAMFVLGMSRNGKTDWKTKGGTTLKALEENKIQ >gi|311091424|gb|AEKJ01000023.1| GENE 109 113785 - 114066 399 93 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0245 NR:ns ## KEGG: HMPREF0868_0245 # Name: not_defined # Def: putative toxin-antitoxin system antitoxin component ribbon-helix-helix domain-containing protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 93 1 94 94 149 89.0 4e-35 MAKTANINVRIEPEVKQQAEDLFGSFGISVTDAINIFLRTSIMEGGFPFQIRKPSFNAET LAMQEARDIMSGKIQAKSYKTTDEFIQALNAED >gi|311091424|gb|AEKJ01000023.1| GENE 110 113966 - 114160 138 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MASVTEIPKLPKRSSACCLTSGSIRTLMFAVLAIILHLLLLIWYFKSETNEVKMIYCTLK KQLS >gi|311091424|gb|AEKJ01000023.1| GENE 111 114336 - 115049 572 237 aa, chain + ## HITS:1 COG:jhp1425 KEGG:ns NR:ns ## COG: jhp1425 COG1451 # Protein_GI_number: 15612490 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Helicobacter pylori J99 # 17 234 16 233 235 149 37.0 3e-36 MISRTAVIGGIEVKITKKSTLKNLYIRINPPKGNVTISAPLHYPDDDISLFVLKKLPEIN AVRARMRSQLRQNKREFISGESHYLWGKPYRLDVAVGTKKYSIEKMPNKILFSVPKGAST ANKEKVFNEWYRSELKRVLQSLIPIVEKRMNLSANEYRIKNMKTRWGTCNIDKKRIWINL QLAKKPIECLEYVLVHEMVHLLEANHTHKFHALVGKYYPTWKDAKKTLEKMPLDYLK >gi|311091424|gb|AEKJ01000023.1| GENE 112 115293 - 115895 561 200 aa, chain - ## HITS:1 COG:lin1310 KEGG:ns NR:ns ## COG: lin1310 COG0681 # Protein_GI_number: 16800378 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 41 193 28 173 180 125 45.0 7e-29 MNNYQAKHASNNQKDEPKAVPFYKSCLQVIFLSAIFLGCYYLLFTFVLANESVSGLSMQP TFENNDRLIAVRHTNLQRGDVVILKAPDNPGAFYIKRIIGMPGDTVSSKNDITYINGKPL REKYLDEYKNSLPKGQLYTNNFSLKKLFNVSRVPKNSYFVMGDHRNISKDSRIIGFIKKK DIVGEVKLRYFPINRIQIFK >gi|311091424|gb|AEKJ01000023.1| GENE 113 115983 - 116729 656 248 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_06265 NR:ns ## KEGG: LAC30SC_06265 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 248 1 247 247 230 47.0 5e-59 MTSYLNKIISLVEELHLPLVDEQVIEIKFIIKCLDAKIPLPSAPNMLGIEPDVMDFYKEK LSAIDYPKLELVNQLLNNFRSYISRKYGVWSLANLNTAKEIVDKYNVHSILEIMAGNAYW SAAFSKLGVKAIATDNLEWAKGSCTGDLLFFPVKKLSAVDAIHKYRDVDIIICCWAPNFG SADMDIIEAYNAIQGKKPKLLFLGEKNGATNTARFWKSAKFKKSCELNSINHTISSFDFI DERFFEIK >gi|311091424|gb|AEKJ01000023.1| GENE 114 116731 - 117696 748 321 aa, chain + ## HITS:1 COG:no KEGG:FI9785_910 NR:ns ## KEGG: FI9785_910 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 309 3 312 325 219 39.0 2e-55 MKKFLLIVTIFLAFVGLAFTISIKQSQNADIILTNNGLSSSYCVYQPNLKLKIRKLLQYL DKNCKSSKLQVQLKSKYDTDEILVWANYNIKGQPVIGDNARYFNKAEFQGNVTFAVISAH TPVANIVTSQNNRYLKYEGQYISIIGQLKANDQSEIQQSAYYLTTGIQQQTGNNNLNNYK IIIDGLNKKQAKKVGHFLKAKAIWVNFAQTYNLKHRINPTKKLVFGIICILFIWGISAMI AYNCNVNRRNLAMKKGKHSMIVNILQFNIISFIMICIIYFIVPMVWFYSNSSAVLKLFIF IFIIQSAIYDGIIFFRPKRRQ >gi|311091424|gb|AEKJ01000023.1| GENE 115 117696 - 119105 1062 469 aa, chain + ## HITS:1 COG:SP1402_1 KEGG:ns NR:ns ## COG: SP1402_1 COG0144 # Protein_GI_number: 15901256 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 3 295 2 280 280 259 45.0 6e-69 MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW LMKEKKLKIQTIPKSQGISDGHPEWTIEKFNDIKKAARFWLQDKIGEGQFAALLKKDVPQ CTDSNLDMITLPSKKIRSNIKDRIQVISKDEFKLINDILHQFNLPLYLSKQLGRAINKNN HIVIPALSDEKLKSLHVISNGIELGILKKNRFEPSHQLVYILAQVKQNNVYNITNESDFK KYLHGETLQVEHPITYGYVLVAFEHHIFSFGKIGKDSILKNYYPKGLRR >gi|311091424|gb|AEKJ01000023.1| GENE 116 119140 - 120165 816 341 aa, chain - ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 3 340 5 341 349 214 36.0 2e-55 MSQRSQRKKDHIDLANKYYLPHPDADFSGINLIRPALPESKISSDSIQTTFFHKIASAPF FIEAMTGGSDESYEINRRLAFCAKKENIAMALGSASILEKEPEQLKSFVIAREINPTGIL LANINPLTKPKVADQIVKELQADALQIHLNAVQEAAMTEGDRDFHWLDNILEIQQLVNVP LIIKEVGMGLDPFSVKKLAKLGINYFDVGGMGGTNFVHIENQRTANKDNLFLDDLGLSTV KSLLSNLQEISHVNFIASGGINSSINIFKSLVLGAKYVGIANHFLHLSMQDKNGTALISE IQKLKYQLIILMALFGINKLDDVKKVKYYLSLELTNFLNQI >gi|311091424|gb|AEKJ01000023.1| GENE 117 120178 - 121251 946 357 aa, chain - ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 354 1 355 358 284 41.0 1e-76 MITEKAPGKLYIAGEYAVLEQHCPAILVALNEFVTVSINKSQGSTGVIHSKQYSQNCIYW SRRGNKMIINNRDNPFEYILSAIKFTEMYCLEKGITLAIYDLHINSELDSPDGKKFGLGS SAAVTVATVKAILHFYGIELDKSLIFKLSAIAHYTVQGNGSAGDIAASVYGGWLAYQTFD KQWLKDELKNNKLSKIVKEQWPGLDIKLLTPPKELKLLIGWSKQPASTAQLVDQTNAKKK FIKEKYNQFLNDSRICVSEMIAAFNAGDIKTIQEHIRENRKILANFARMNNISIEIPKLT TLIEIAEKYNGAAKTSGAGNGDCGIVIADSSTNISKLKEMWILNDIKPLDFVIHSIK >gi|311091424|gb|AEKJ01000023.1| GENE 118 121263 - 122240 753 325 aa, chain - ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 5 321 7 326 327 242 44.0 7e-64 MKIIARAHTNIALIKYWGKADSSLKIPLMSSISMTLDAFYTETEFTHNVDLANDMVIMNG KAVNDQASCRIINYVKKLQDIYGFNDHFCIKTENHVPTAAGLASSASGFAALATSFAASY NLNLNRQELSRVARLGSGSATRSIFGGFVEWQKGYDDQTSFAFPINEHPQMDLTMLAIEL DVSPKEISSTCGMKIAQTSPFYQTWLNLNKQEISEMESAIKNNNFTRLGELSELSANEMH SLNLTAMPSFSYFQPTTITIMNLVRNLRKNGIECYYTIDAGPNVKILCQDKSVEDICKAI HNTLDSVKIIKSKFGPGVQIINCDD >gi|311091424|gb|AEKJ01000023.1| GENE 119 122255 - 123175 1125 306 aa, chain - ## HITS:1 COG:L7866 KEGG:ns NR:ns ## COG: L7866 COG1577 # Protein_GI_number: 15672386 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Lactococcus lactis # 11 303 12 307 310 174 34.0 2e-43 MNKRKVIVKTHGKVILIGEHSVVYGKDAMALPIHALNIATSVEAYHDGIWMDTLRYQGPY LTAPAEYNGLKHVVKKILSKIPTPCSIKITYTGEIPMERGLGSSAVVALGTAKALNEYFA LKMTSEEITDITNEAETINHGKASGLDAATVQSDYLVFFNKNMGPKVLSEKLGATLLIMD TGELGNTKEAVSSVKYQIEHDIAKKEAIDKLGYLADQTKDYWFKKDAPMVGTIFNEAQDI LANFGLSTTRINNLCNIANKNGAYGCKLSGGGLGGIVIALCPNQEVASSIAQLAINNYEN YWIEEI >gi|311091424|gb|AEKJ01000023.1| GENE 120 123244 - 126717 2735 1157 aa, chain + ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 29 1146 28 1150 1157 301 24.0 5e-81 MINIITSTQAYDLQNEILNMAVKTYLNNKTKKTFVIVPNHVKFTTEIATLKKIANINKQD SVSVTNLQVLSFSRLAWYFLRNQKIALPEIIDDATSLMILEKIVKNKKDELLLFNNSNNG SLKQIYESIILIHQGNVDLNSISHEAVTEETSRKLHDLQIIYDEFIQMLGDHFTTKDGIQ LILKTVLDKKLSIDNMNFFFCGFSYFSLSELNIVKIIAKKAHLSVFAFQTKDAQINDKVM EGDYDYIVQSTIAKLINFFNANSLKFSTKEYGYNINLNNKEKLNAIWTGNIPQQGLDLTN YVHLIKADSRYAEINFVAQTIYQQVVFNHYRYKDFLVLAPNLSEYETYLTPIFSQNNISM FNDLQKQMKFHPLVVMIENIADINDMGFKTQDIITILKTRLLIPEWYTDDIKFIADVDLL ENFVLAHNINHQLWKKSFYDFVDNNISHLDQINEKVEKLDKLRQFIIENIDNLITQLHKL TNVQEAVTLFWNFLLKNKINKKLEKWRNTAINNGDLQLAQQPEQIWALLNKLLKDYVLIA EEFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIGMVQNNSFKQVFIIGAVNNSLPKI QNKPGFLNIENINELNNSIADEQQYIENNQEVNNLDQTYQFGDVLSLASDGVYISYPIIN VSNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSFITTPQASLGYIVYLKNKTNDD ISNLLALTPSNQALLFDNVIQASSFKNKPVNLTPALAQELYGNNINISISQLETFYANSY EYFLTYGLHLHKRFENELTNIQSGNYYHETMDRLVKYLKQHKLDFAELTKDKISVILANI QDELKTKGSYRELLGDPFNEFLFKCLDRTTKKVVNYWHQNMFQTKFCPLYSELSFGNKEY IAGLSYQFIDKQQKTHHISLRGKIDRVDLLKDCDNEILQLIDYKSSAKKFDFNLFKNGIS MQMLSYLSVLQDNSHIFSTNPVNIFGAFYQTMTQKVEHLNNKANISSSFVTKRTPDESVN KLKYNGLFILDDDLNISQIDANLDTPSTYSKLYSNLRINKDNNLISANGISRNDFSLLEQ YNKLLIINAAKSILNGDIKLNPYKYMDTTPLTFSDYNDIYFFDDMLPENNYHHILKADKK TIISEIVDEIERNKTND >gi|311091424|gb|AEKJ01000023.1| GENE 121 126710 - 127315 481 201 aa, chain + ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 2 190 9 199 1232 128 36.0 7e-30 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA SEMKLRIKNAIKNKIKEQPDNLFLKQQLAKVDIANISTIDSFCLEVIRKFYYVINLDPNF SIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYNNFAGDREVEAARSMLLELYYVTL AQPNYEAFFKEIRFFLSNRYQ >gi|311091424|gb|AEKJ01000023.1| GENE 122 127263 - 128006 597 247 aa, chain + ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 70 234 257 423 1232 80 27.0 2e-15 MKHFLKRLDFFYQIDINKNDIISSNLWQEKIKPLLLTNLQNIINKISQYIAEAEHDFNDL NKLIEQLNLFMKSLNYLLAGIEQNLNYDEIRSRFSNCKFVGRLRRSSNWDESSTNLYQEI SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELTFINEFGKLKRKNNI IDFNDMEQFAYKILTSDSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVIKEKVKT IYLWWGM >gi|311091424|gb|AEKJ01000023.1| GENE 123 127991 - 130330 1575 779 aa, chain + ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 1 764 435 1218 1232 387 31.0 1e-107 MVGDVKQSIYGFRQAQPHLFLQKYHQFSNEVQSERIILSDNFRSSKNVTQIVNNIFDALL TENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKQSIADEDEEVNDLDEINLV ITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSENLKLFQAFANAKLPLFVSDIQ NYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEPEFAKIRIASRSTSFYDAII NYIQTSDDELSIKCKNFINELSHFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRR VNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSK GLEFPIVFLIGLNHKYQQADTTNNYVITTKSGLGLTITTADYRIDSLVKSYCNFEKKLQN LEEEIRILYVGLTRAKQKLIMVSTMANEKIIPDFQNQLDAHNQLPFIDKSNAISPMSFLG PELFAHQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQPSVQISNQSRSDLSDKLLATVKT LYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNSKLINSANKYLMPISDKPAFLKK ANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLIENLVLQNKLNPDIIPHLSKHDINWFV TSNFAKAFWEKSDNLYREIEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILF DYKTDFVDRSNLELAINNLKKKYAGQLSLYASALNNLSDKKVKAKYLILLSINKIVKVD >gi|311091424|gb|AEKJ01000023.1| GENE 124 130354 - 133155 2052 933 aa, chain + ## HITS:1 COG:lin2013_2 KEGG:ns NR:ns ## COG: lin2013_2 COG1199 # Protein_GI_number: 16801079 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 262 914 1 645 668 219 27.0 2e-56 MVSRAFEHDVFAVVDLETTGTQIKQHDRIIQFGCAIIKDRKITKTYSFLINPEKTIPRAV ENLTGISNQEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGK AIDTVELAQIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEMLPT ATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLIQIKNIVIKKQDKILGKEKVK NIAFPKSDLEKRKLFKHFIKFRRGQVSLINRIHEFVINDSANNLIVEAPSGSGKTFAYLM AFAYNLYSSRKLVIAVPTKILQRQLISQEIKQLLKITNLDLNAEEVKSSRHYLDLDGFFN SIYQTSSDRQTLILQMSILVWLTSTETGDLDELQLTNYDAQIFNQITHPGDARVGTTFSD YDFWNLVRSKQEQADILVTNHAYLANNYSDSIWGQNPFLVIDEAHRFIDNFNNSRSNSLQ FEAFWGACTHLQNILFYDKNCIDNRFSNDSRYNIYLENLKYAIIDLIHQINQIQTELFAR IAYSQSRVDKGNNRVDVIFNGSELFSDVATFKQLFNLLQNKIEVVRKNTNEILFLLYEQE NNIVNTDEANILELQESIDRFDYYSEQIYILLDQLNTKMSLEEEGYVLQISNINDPLTTN INWLMVNSVSEISLLYSYFTKKLFISATMSQNNNFDYIKKELFLANDTNSYLAKNTFDFS KRLNIIGLKDSQVASDPNSAEFTDFIAKFIMHSVQNMDHVLVLFTNLDTIKEVFLQIQTA NELKDFEILAQGLTGSNERLAKRFSIAKRSILLGANSFWEGIDFKNCNINLVIVTKLPFE SPDQADIKLREQKLRNIMTPSQIFENSTLPRAIIRFKQGCGRLIRNEYDKGTLVILDQRL WLKNYGIKFVENVPVTVEYKTFKDLQKALSKDK >gi|311091424|gb|AEKJ01000023.1| GENE 125 133152 - 133661 328 169 aa, chain + ## HITS:1 COG:no KEGG:LJ1201 NR:ns ## KEGG: LJ1201 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 19 169 14 164 164 137 44.0 1e-31 MINKNKIDIRFKIKKAIIICISTLLLISLITCLFFFISGHSKRKAAQNAIKIALNKTPIT KIDEVYHLSRDITSDSVSGRDKHNHRYYFVYIPSKKKAYYYSAKEGMNKAKISSLFEYLH PNQNTYKINFGWYKYLPVWEISYKKNNGNYGYAIYSFKTGKEIFFVDNI >gi|311091424|gb|AEKJ01000023.1| GENE 126 133735 - 135033 1649 432 aa, chain + ## HITS:1 COG:BH1696 KEGG:ns NR:ns ## COG: BH1696 COG0017 # Protein_GI_number: 15614259 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Bacillus halodurans # 6 432 4 430 430 530 58.0 1e-150 MTKLISIKDAPKYVDQEVKMHVWLTDKRSSGKIMFLQFRDGTAFFQAVLLKKNVSEELFE QAKNLRQEASLYVTGTINKDERSHFGYELQISDFQVVTNNDGYPIGNKEHGIDFLLDHRH LWLRSKRPFAIMKIRNVAFKAIVDYFEDNGFIKFDAPILMHSAPEGTTELFHIEYFNSDA YLSQSGQLYGEVGAHAFGKIFTFGPTFRAEESKTRRHLTEFWMMEPEMAWMHQDESLEIQ EGLLKFVTKRILDNCEYELSILGRDPEKLRPTTEGNFARLSYDEAVKMLQDAGRDFKWGD DFGAPDEAFISEQYDRPVFILNYPTAIKPFYMKKNPENPLEYLCADVLAPEGYGEIIGGS EREEDYDTLKAQIEEAGLDLKDYEWYLDLRKYGSVPHSGFGIGFERFLGWICKLDHIREA IPFPRLINRLEP >gi|311091424|gb|AEKJ01000023.1| GENE 127 135094 - 135729 544 211 aa, chain + ## HITS:1 COG:BH1697 KEGG:ns NR:ns ## COG: BH1697 COG3935 # Protein_GI_number: 15614260 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus halodurans # 4 211 6 206 233 127 33.0 2e-29 MVSFAKYQKLGFTTVSNALLLYYHKLNINEVELALLLHLESFNQKNNRFPSDEMIANRMN FNAIQVSQLIQQLIDKKLIELKQQRDENKRITNYYDLSMLYEKLDTIVDKATYDQTIDSV QLDYQTTDSPLQNIIRQFEIEFGRLLSPIEKQQISSWLVIDHYKPEIINLALRESVLSQV YNFKYIDRILLNWQRHNLTDIKQVKAFLTRY >gi|311091424|gb|AEKJ01000023.1| GENE 128 135755 - 136381 691 208 aa, chain + ## HITS:1 COG:SPy0929 KEGG:ns NR:ns ## COG: SPy0929 COG0177 # Protein_GI_number: 15674949 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Streptococcus pyogenes M1 GAS # 9 197 3 193 218 199 55.0 2e-51 MTSNNLVSISEARQILYKIISLFPDAKGELRWGTPFQLLCAVLMSAQTTDKMVNKVTPIL FKKFPDSKSLAAANISDVEACIKNIGLYRTKAKHLKTTATLIENKYQGIVPKNKKALLTL PGVGIKTANVVLAEAFGVPSIAVDTHVMRIAKQFKIVPKSADPSQIETILENIMPQKDWI KLHHAMIAFGRYKMPAKYRNENPYNFLK >gi|311091424|gb|AEKJ01000023.1| GENE 129 136431 - 138740 2212 769 aa, chain - ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 35 651 18 642 719 469 44.0 1e-132 MSENKNSSERNTRSSKYHKNKKEKHLGWLVLKLILLFVVVIIVSGVGLFAYYAKDAPSIS KAQLQSGGTSSLYTTDGKFLLSLGSEKRIYVDDKHIPQKLKDAVISVEDKRFYSEGFGLD PVRIVGSVLVNARAKGVAAGGSTITQQLVKLSVFSTAMSQRTLKRKAQEAWLSMKVEREF SKKQILEFYINKVYMNYGNYGMGTAADFYYGKPLKDLNLAQTALIAGMPNAPISYDPYVY PKKAKYRRDIVLYSMLKNKKISSAQYNAAVKVPITEGLLSKKDKVNSNLRKVDDPYIKEV INEVKEKGFNPYNDNLKITININQHIQQKLYDLANNGEVPFTNDKMQIGATIIDPNNGHV VAILGGRKLPAVQLGLNRAVQTARSTGSTIKPVLDYAPAIEYLKWSTSHIINDSKYIYPG TKIQLYDWDNVYQGKMSIRRALEQSRNVPAVKTLKKVGLARASLFVRKMGINIPSDSGLS VGIGANASTLQMASAYAAFANNGRYYKPQFVSKIETPDGITRNYDSSSTKVMKESTAYMI TDMLKGVLTRGSGTMAKCDNIYEAGKTGTVKYSDEDLVKFPSYAHTPKDSWFIGYTKAYS IGIWTGYDNLKDGTISGIGENSAQLFYKKMMTYLMKNKANSNWKKPSTVVRCRIVNGTER KVAPKHSKNYTWQLFVKGHAPAPDDNDDDVDNIDDSDDKVNTADEDADKDNDVKDDDNQT DDNKGDGDQGKNSNSSSNSDKNNSNATDSSSTTTDTHSDSTSTSSSVNH >gi|311091424|gb|AEKJ01000023.1| GENE 130 138745 - 139335 692 196 aa, chain - ## HITS:1 COG:BH1703 KEGG:ns NR:ns ## COG: BH1703 COG3331 # Protein_GI_number: 15614266 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Bacillus halodurans # 2 190 3 195 199 199 55.0 3e-51 MVNYPRGIFSSIEHSISHQNKIIFSDRGMTLEQQINESNEYYLNHNIAVIHKKPTPIQIV KVDYPRRSRAVIKEAYFRQASTTDYNGVYRGYYLDFEAKETKNRKSFPLKNFHEHQIIHL QKCLEQKGICFAIIRFVTLNRYFITPASYLIRMWYSNSKKSLSLIDIINNSYEIKSGYNP TLSYLDGVDKFIIDRI >gi|311091424|gb|AEKJ01000023.1| GENE 131 139408 - 139947 551 179 aa, chain + ## HITS:1 COG:lin2003 KEGG:ns NR:ns ## COG: lin2003 COG4474 # Protein_GI_number: 16801069 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 178 1 176 181 112 34.0 3e-25 MHCIWISGYRNYELNVFNNNDPKIKVIKIAIKNYLQRKLEDRCLDWVIAGPNLGVEQWSL EVANDLRNFYSDLHTALIFPYTNFGNNWAQSKQEYLSNLRSDVDFYTELSSQNYQNPKQF IQFQEFMLKHTEGALLIYDLEHKGKTSYDYQAIKFYQTQKNYFLDIIDFYDLQDIASES >gi|311091424|gb|AEKJ01000023.1| GENE 132 140023 - 140364 481 113 aa, chain + ## HITS:1 COG:lin2002 KEGG:ns NR:ns ## COG: lin2002 COG3599 # Protein_GI_number: 16801068 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 1 101 1 106 113 58 35.0 4e-09 MTSKQNIQLSAEDILKKEFSTKLKGYDQEEVNSYLDIIISDYEHFNQIIDDQQKQISELQ EEIKNSELRDRQNPYENLIKTETTNVSMIQRISTLERKVYALEQRLNMNNQTY >gi|311091424|gb|AEKJ01000023.1| GENE 133 140837 - 141961 1187 374 aa, chain + ## HITS:1 COG:SP0373 KEGG:ns NR:ns ## COG: SP0373 COG0116 # Protein_GI_number: 15900296 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Streptococcus pneumoniae TIGR4 # 2 370 3 375 385 369 48.0 1e-102 MKNYDLYATMGTGFEAVVAKELQNLGYNTTTENGRVFFKGDIEDIIKTNINLRTADRIKI LLKEFKALDFETLYDQIFNYDWAQLLPVDAKFPVSGRSVKSKLHSEPDIQSIVKKAIVDK MIQQYHRRGFLPETGNLYHLDIYINKDIARISLDTTGASLFKRGYRVEHGGAPLKENFAA GLLKLTPYNGTHPLIDPFTGSGTLAIEAALIARNIAPGLWRNFAFNNFDWVDNNLYKQEI ENAKSKISKNHAPIIASDIDQSILEIAKVNANNAGVLDDIRFKQVAIKDFATDLTNGIII ANPPYGQRLKDKTSARKIYQEMGNVLGNLSSFNQYYLTSDVEFEKYFGKVANKKRKLFNG NIRTDFYQYWHTKK >gi|311091424|gb|AEKJ01000023.1| GENE 134 142054 - 142401 263 115 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0912 NR:ns ## KEGG: LDBND_0912 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 112 1 112 118 73 41.0 2e-12 MKKHFIFLGTNGLIYYSWLFIILFMSIIFQQETSKNISLACIVLGSIFIISLIYTLLFSY IECKNQTYFLKLPYLKKKRVFKPEFINRYLGLSFYKVNVANSNYFIVIVEKRSNA >gi|311091424|gb|AEKJ01000023.1| GENE 135 142401 - 144077 1889 558 aa, chain + ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 558 1 556 556 563 52.0 1e-160 MYSDIEISQKNKPIKITDIAHKLGLSGNDLDLYGNYKAKIHWDAIKKAKHNSKLGKLILV TSISPTPAGEGKTTISIGLGDAINNQLHKKTIIALREPSLGPVFGLKGGATGGGYAQVVP MEDINLHFTGDMHALTCAIDTLAALVDNYIYQNNECNLDPNSILLKRGIDVNDRTLRKIM IGQGSKFNGIERPASFAITVANELMAILCLSKDINDLKYRIGNILVGFSTTNKPIYVHDL GFEGSIAALLGDALKPNLVQTLEKTPTLIHGGPFANIAHGANSIIATNLALHLSDYVLTE AGFGADLGGQKFMDFVSDHLEKTPDAVVIVATVRALKYQHEKSTTNLANENIESLTTGFV NLKRHMHNMKRYNIPVIVLINKFDTDTDAELRTLQELIKAEGFESEIVNYHDLGSKGGIV AAQKVIDLADNNTKSIIKTYDPTDNIKAKIEKIAKNIYHATNVVYSEKAEKHLENIKKLG KDDLPPIMAKTQISFTDDKKQLGAPDSFTLHVKNVSLKNGAGFIVVYTGNIVDMPGLPKK PAALNIDIDNDGKISGLF >gi|311091424|gb|AEKJ01000023.1| GENE 136 144078 - 144554 382 158 aa, chain + ## HITS:1 COG:L0335 KEGG:ns NR:ns ## COG: L0335 COG0597 # Protein_GI_number: 15672979 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Lactococcus lactis # 13 157 7 148 150 102 39.0 4e-22 MKKYHIIDNCKYLIISILIIVCDQILKRYIIDNFKLGQSQEIIPGLLSFTYLRNTGAAWN LLAGKMNLFYIISILALIVVIYYLFSLKYSHRFFKFGLAMVLGGIVGNFIDRLIFKYVID MFDLDFINFNIFNLADCAITFGVIFIFYYFVFLVEKEN >gi|311091424|gb|AEKJ01000023.1| GENE 137 144562 - 145497 334 311 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 45 294 41 283 285 133 35 6e-30 MNDNISYNLVVKSEESGVRLDKYIATHISTISRTRVQELIKQKLITTNGLQTKLSYKVNT NDKINIEIPSPQPLSLDPENLNLDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNGLIY HTKNLAKCDEIFRPGIVHRIDKDTSGLLMIAKNATARISLEKQLANKINKREYIAIVHAN FKHSSGVIDAPIGRNPYQRQQMAVVASGKKAITHFTVLEQFPGYSLVKCVLETGRTHQIR VHMSYIGHPIAGDPLYGPKKTLNGNGQFLHAKTLGFYHPKTNQWLEFSISEPQIFAKQLY LLRKKLTNNLV >gi|311091424|gb|AEKJ01000023.1| GENE 138 145502 - 146563 926 353 aa, chain + ## HITS:1 COG:L43866 KEGG:ns NR:ns ## COG: L43866 COG0505 # Protein_GI_number: 15673583 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Lactococcus lactis # 3 353 4 353 357 235 38.0 1e-61 MARYLILEDGTAYKGTGFGSLTISTGELAIQTANFGYQEAISDPANFGKILAFTTPMIGG SGINAIDYESIVPSIKGIVVNDLAPQSYFEGIDTYQSLDNFLSEKKIPGIYGIDVRSLVH KIKEHKTIKASIMDTDDNHAFDQIKALVLPKNKTAQISTSNAYAAPNVGKTVAVIDLGIK HSLLRALSLRKINCVVLPYNASINDINNIRPDGIIISNGPGKVGELINYINPIFDYFYKK LPILTIGLGYLLLSNYLGLELFDIFPPYNGSNFPVIDQNTHKIWQTSINLNSLVMPVDTK LSFSNIYYDLNSDLIAGYSLLQDKAIGVAFNPEGSPGTFDAKKIFDDFTMMME >gi|311091424|gb|AEKJ01000023.1| GENE 139 146570 - 149737 2932 1055 aa, chain + ## HITS:1 COG:BH2536 KEGG:ns NR:ns ## COG: BH2536 COG0458 # Protein_GI_number: 15615099 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Bacillus halodurans # 6 1055 6 1058 1062 555 30.0 1e-157 MPLSREINKILILGAGANIVNKVSDFDILCHQAIQALCEDNVQIILINPNPATIQTDTCK NIHVFLEPLTTDFVKRIIRMEKPDAILTAFGGTPAIELVKKLQKDGIIQDMNIKLLTIND LCLKIKDAQFLYDFLSENQIPVADQWLLHSVSDLSNVLKNAQYPLLITKSVKYRTDKVCS VNNFGMVKDYFQQEAESTRFNLKNYRINEDLSSWEELIFDVIRDNTGNCCFINSMSSLEP VSVNSHDSILIAPILTHNNNQIQELRHCCSKIANLLNINGILTIHFAVKKEGDSFVYKVL SVKPRLTHTSLISYRINIYSVGYVIAKIAIGYNLNEIIDPQSGLNSAIEPINDAFAIKMP YWSFTELSSNYYELGNKSTSSGLALGIGRNFETALMKAIQSTTNIMQNKRIYFNTLNNAS DDEIINKLQHVDNHHLLMLIVAISKGISLSDIQLHTGINCIFLQKIAHIVNVGKKFKQNP EQVNNLIAAKKCGFSNKLLSMIANIDENLIDELLDKHNIKPSYIGIDGAAGLHAPKINAY YSGYDVENEIIPLSKQDKCLIIGLKSFQISQTGEFDYMIYHVAQTLKKHKMQTVIISNNP ESISNSYDLCDRVYFEPITLENILYICKKENIKYLITQFSGKQINQYRQRLLAHGLKLLG QDNLSDVLQQDRKQQIINANVNPVPALITTNRNEVLSFIETYKFPVLIGGFKNDKKQKSA VVFDKPALNRYIDENDLDKISISQFIEGNKYEITTISDGKNVTIPGIIEHFEQTGSHASD SIAVFRPQNLTSNKQRLIRDAVVNIAQQIHLRGPINLHILLANEQIYVLQIKTYAGHNVA FLSKSLQQDISAISTEVLLGKNLDELGLANDVWPSNNLIYIKMPVFSYLSYNSVNTFDSK MKTSGSVMGRANRLPFALYKGYEASNLTIPSYGTVFISVKDSDKKSAISVAARFHKLGFQ LLATEGTANILAEEGITTSIVEKLQTGNNSLLEKIAQHKINLVINVTNLSDSASHDAIMI KDQALNTHIPVFSSIQSAENILNVLETMAMCTQPL >gi|311091424|gb|AEKJ01000023.1| GENE 140 149805 - 151502 1578 565 aa, chain - ## HITS:1 COG:BS_yloA KEGG:ns NR:ns ## COG: BS_yloA COG1293 # Protein_GI_number: 16078628 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Bacillus subtilis # 1 560 3 567 572 374 38.0 1e-103 MPFDGLFIHSLLKTLTTNLKKARLSKIYQPFDNDLILIFRNQGINYKLLISINAQHPRMH ITTKNIINPDTASTFVMVLRKYLEGAILNEIKQVGMERIINLYFSNRNEFGDETNFVLSV ELMGRHSNVILYNKATNKIIDLLKRINPEDNRVRLLLPHADYQLPPLITGIDGSTITQSE FDRLLAKYTTPLDMVNKFNGLDSDDKKELLGYFNNDFSFDALKLFMSNFDKPQGYVLQTV NHQNKFFCYRPRYLNLYVVLQSEDINKALDDFYQDMANREWVRQKAKAVENVVNNENKKL SRKLIKLQKQLDSAENSTEFRIKGEILNVYLSNIKPGITTISLPNYYDENKPINIKLDPA LSPAKNAQKYFVKYQKLRNSIKFIKEQIKLTQDNLAYFDTIQTAINNAEPQDIALIREEL INQGYIRQHNKNNNLRKKKITADNIACFTLTSGKKVWVGKNNYQNDWLTLKKADKRFLWL HVKNIPGSHVILQDIEPTMADIKEAAEIAAYFSKARYSANVVVDYITVKKIKKPKGAKPG FVIYTGQKSISVTPIKEDILCKRDN >gi|311091424|gb|AEKJ01000023.1| GENE 141 151594 - 152568 847 324 aa, chain + ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 36 317 4 280 283 199 39.0 5e-51 MIFKLLQISFCGIIFTYIKIYAHRKIRSIKEFLVVKIAIVTDSTSDITVQEASDNNISIL PIPVIIDNHTYLDNIDISTKQLFDMQRNGSGFPQTSQPVLGDTMALFDKLHNSGYDAIIV ITLASTISGFFQTVNTISNEHPEYNIIPYDSGITVRLMGYLALTAARLAKKGSTPKEIID HLDALSSTIDEIFVVDDLKNLVRGGRLSNASAFVGSMLQIKPLLTFDDQSHKIVSFDKVR SMKRALKKTISLSEDKINQVNNNQDLRIMIYHSNDIHGAEALFEYFKEAYPQNNIEIQEF DPVIATHLGEKALGVTWIKDIDKM >gi|311091424|gb|AEKJ01000023.1| GENE 142 152663 - 153259 757 198 aa, chain - ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 7 195 3 193 194 223 62.0 2e-58 MSKENVFPQIAPEQEVGPVVRITTSYGDITIKLFEKEAPMTVENFLQLAKKDYYNNTIFH RVISDFMIQGGDPKGNGTGGTSIWGHSFEDEFSDVLFNIRGALSMANSGPNTNGSQFFIV QNKTMPKRYLKDMESAGYPNEIINAYKNGGTPWLDHRHTVFGQVIKGMDVVDQIAKAPRD RANDKPLEDIKIINIVEE >gi|311091424|gb|AEKJ01000023.1| GENE 143 153380 - 154315 1134 311 aa, chain - ## HITS:1 COG:SPy0380 KEGG:ns NR:ns ## COG: SPy0380 COG1227 # Protein_GI_number: 15674527 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pyogenes M1 GAS # 1 310 1 310 311 330 56.0 2e-90 MTKELIFGHQNPDTDAIGTAIAFSYLQNKLGYDTEAVALGNPNDETQYALDKFGFKAPRV VKTVKNEVDSVMLVDHNEPQQSVADIDQVNVSWVVDHHRIMNFNTANPLYYRAEPVGCTS TVVWKMYKENGVEIPANIAGIMLSAIISDTLLLKSPTTTQDDKNAVEFLAKVAGVDYQEY GLSLLKAGTNIASKTEKELINLDAKSFELNGHIVRIAQINTVDLPEAMERKAAFMKEMQN ASASDNYEMFMLVITNILDSNSEAIVVGTDECKLLFEKAFDKKLVDSSVALPGVVSRKKQ VVPPLTQAFAN >gi|311091424|gb|AEKJ01000023.1| GENE 144 154394 - 156889 2450 831 aa, chain - ## HITS:1 COG:SPy0910 KEGG:ns NR:ns ## COG: SPy0910 COG0188 # Protein_GI_number: 15674931 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 10 806 4 810 819 823 53.0 0 MTNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNT FDKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPA AMRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGY ATEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRG RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKK SVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTEK QAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKEF GSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSADNGLPSGD EVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFD INNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDS DNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLG IVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPHRIVAALIYTQNHDINIKTSSDRT IKIRTNDYPVGDRYSNGSFVVDTTSDGVPVALKLGMPLAEELGHDVSDLFD >gi|311091424|gb|AEKJ01000023.1| GENE 145 156915 - 158858 2158 647 aa, chain - ## HITS:1 COG:L0290 KEGG:ns NR:ns ## COG: L0290 COG0187 # Protein_GI_number: 15672961 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 6 640 6 641 644 865 68.0 0 MTNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGYGKE INVTIHPDNSVSVQDFGRGMPTGMHASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGVG SSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIFS TTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDGIKSFVSYLNEDKDTIG DIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRAFNDYAK KQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDNIIYEQ LSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTPAQSRNP EKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINTMIHTIG AGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYIALPPLYK LEKGQGKNVEIKYSWTDEELQKDVKEFGKGYSLQRFKGLGEMNADQLWETTMNPNTRTLI RVKIDDAALAERRVTTLMGDKVAARRKWIDENVKFKLGEDASILENQ >gi|311091424|gb|AEKJ01000023.1| GENE 146 158969 - 159598 511 209 aa, chain + ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 8 201 4 204 213 135 48.0 5e-32 MSVFNSNIILFILAYLLGSFPSGLIVGLIFFKKDIRNFGSGNIGTTNTFRILGPKAGIAV LFADVFKGWLAVNMFKLCHIHVVNLVLLITGLLAILGHTFSIFLKFKGGKAVATIAGVLF AYNFNFTLVCATIFLPMIFITSCISLSALISIVIIFIVSFLFHDIYLSILLGFLVLLVYI RHRSNIIRLINGKENIIPFGLFYWYRKIK Prediction of potential genes in microbial genomes Time: Wed Jul 13 05:56:43 2011 Seq name: gi|311091283|gb|AEKJ01000024.1| Lactobacillus iners LEAF 2062A-h1 contig00012, whole genome shotgun sequence Length of sequence - 145878 bp Number of predicted genes - 147, with homology - 134 Number of transcription units - 80, operones - 32 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 8625 9534 ## COG1404 Subtilisin-like serine proteases - Prom 8653 - 8712 8.5 - Term 8760 - 8797 5.5 2 2 Tu 1 . - CDS 8873 - 9259 419 ## COG2314 Predicted membrane protein - Prom 9288 - 9347 7.4 - Term 9354 - 9411 8.3 3 3 Op 1 . - CDS 9446 - 14773 7264 ## HMPREF9243_0550 LPXTG-motif cell wall anchor domain protein - Prom 14805 - 14864 1.9 4 3 Op 2 . - CDS 14874 - 15071 314 ## FMG_1333 putative biofilm-associated surface protein - Prom 15218 - 15277 10.8 - Term 15552 - 15589 2.3 5 4 Op 1 . - CDS 15667 - 16089 433 ## HMPREF0868_0260 hypothetical protein 6 4 Op 2 . - CDS 16091 - 16315 382 ## HMPREF0868_0259 Xre family toxin-antitoxin system antitoxin protein - Prom 16353 - 16412 7.4 - Term 16419 - 16460 7.4 7 5 Tu 1 . - CDS 16485 - 21869 6340 ## SERP1011 cell wall associated fibronectin-binding protein - Prom 21961 - 22020 7.3 - Term 22048 - 22091 5.8 8 6 Op 1 . - CDS 22095 - 23159 871 ## COG3274 Uncharacterized protein conserved in bacteria - Prom 23305 - 23364 3.3 - Term 23297 - 23336 -0.9 9 6 Op 2 . - CDS 23374 - 23976 621 ## HMPREF0573_11545 hypothetical protein - Prom 24005 - 24064 7.7 - Term 24352 - 24390 6.1 10 7 Tu 1 . - CDS 24591 - 24809 180 ## - Prom 24839 - 24898 7.6 - Term 24930 - 24962 2.4 11 8 Op 1 . - CDS 25054 - 25560 215 ## PROTEIN SUPPORTED gi|50365462|ref|YP_053887.1| acetyltransferase of 30S ribosomal protein L7 12 8 Op 2 . - CDS 25576 - 25737 172 ## gi|312873062|ref|ZP_07733121.1| conserved domain protein 13 8 Op 3 . - CDS 25737 - 26111 502 ## HMPREF0868_0167 hypothetical protein 14 8 Op 4 . - CDS 26111 - 26596 710 ## Fisuc_2497 hypothetical protein - Prom 26641 - 26700 4.9 - Term 26770 - 26813 0.2 15 9 Op 1 . - CDS 26825 - 27418 456 ## HMPREF0868_0163 toxin-antitoxin system, toxin component family protein 16 9 Op 2 . - CDS 27411 - 27731 438 ## HMPREF0868_0162 DNA-binding helix-turn-helix protein - Prom 27751 - 27810 7.2 - Term 27888 - 27923 2.2 17 10 Tu 1 . - CDS 28002 - 29312 1027 ## COG0477 Permeases of the major facilitator superfamily - Prom 29333 - 29392 5.2 + Prom 29426 - 29485 6.4 18 11 Tu 1 . + CDS 29506 - 29805 417 ## HMPREF0424_0740 hypothetical protein + Term 29973 - 30014 -0.8 19 12 Op 1 . - CDS 29902 - 30519 576 ## HMPREF0424_0739 hypothetical protein 20 12 Op 2 . - CDS 30589 - 31062 526 ## gi|309804456|ref|ZP_07698523.1| hypothetical protein HMPREF9213_0967 - Prom 31097 - 31156 10.4 - Term 31744 - 31777 1.1 21 13 Tu 1 . - CDS 31822 - 32847 997 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 32905 - 32964 13.0 22 14 Op 1 . - CDS 33150 - 33386 270 ## HMPREF0421_21053 hypothetical protein 23 14 Op 2 . - CDS 33358 - 33684 476 ## HMPREF0421_21067 toxin-antitoxin system 24 14 Op 3 . - CDS 33747 - 35225 1273 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 25 15 Tu 1 . - CDS 35401 - 35595 279 ## HMPREF0868_0396 toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain-containing protein - Prom 35691 - 35750 6.8 + Prom 35461 - 35520 4.0 26 16 Tu 1 . + CDS 35576 - 35770 131 ## + Prom 35998 - 36057 7.1 27 17 Op 1 . + CDS 36085 - 36390 459 ## HMPREF0421_21051 toxin-antitoxin system 28 17 Op 2 . + CDS 36387 - 36713 256 ## HMPREF0424_0746 toxin-antitoxin system, toxin component, RelE family - Term 36897 - 36954 2.1 29 18 Tu 1 . - CDS 36979 - 37611 943 ## HMPREF0421_21058 XRE family transcriptional regulator - Prom 37693 - 37752 5.0 - Term 37964 - 38010 11.0 30 19 Op 1 . - CDS 38039 - 38218 154 ## HMPREF0421_21066 addiction module toxin RelE 31 19 Op 2 . - CDS 38190 - 38375 287 ## HMPREF0421_21067 toxin-antitoxin system - Prom 38437 - 38496 3.2 32 20 Tu 1 . - CDS 38682 - 39293 779 ## COG4300 Predicted permease, cadmium resistance protein - Term 39665 - 39711 10.1 33 21 Op 1 . - CDS 39740 - 39919 135 ## HMPREF0421_21066 addiction module toxin RelE 34 21 Op 2 . - CDS 39891 - 40115 297 ## HMPREF0421_21067 toxin-antitoxin system - Prom 40224 - 40283 6.9 + Prom 39861 - 39920 2.2 35 22 Tu 1 . + CDS 40075 - 40269 114 ## - Term 40208 - 40243 -0.6 36 23 Tu 1 . - CDS 40317 - 40751 463 ## HMPREF0421_21046 hypothetical protein - Prom 40848 - 40907 7.9 + Prom 40819 - 40878 8.2 37 24 Tu 1 . + CDS 40972 - 41151 63 ## COG1476 Predicted transcriptional regulators + Term 41205 - 41249 6.0 - Term 41267 - 41307 10.4 38 25 Tu 1 . - CDS 41346 - 41522 68 ## HMPREF0421_21071 phage integrase family site-specific recombinase - Prom 41656 - 41715 3.5 - Term 41660 - 41689 0.5 39 26 Op 1 . - CDS 41721 - 42305 558 ## Apre_1785 hypothetical protein 40 26 Op 2 . - CDS 42332 - 42493 98 ## 41 26 Op 3 . - CDS 42471 - 42905 610 ## COG0295 Cytidine deaminase - Prom 43017 - 43076 6.0 42 27 Op 1 . - CDS 43103 - 43588 391 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 43 27 Op 2 . - CDS 43666 - 44004 342 ## FMG_0970 hypothetical protein - Prom 44125 - 44184 3.6 44 28 Tu 1 . - CDS 44391 - 44798 596 ## SGO_1462 NUDIX domain-containing protein - Prom 44938 - 44997 8.4 + Prom 45666 - 45725 9.2 45 29 Tu 1 . + CDS 45806 - 45973 137 ## CD1870 putative conjugative transposon mobilization protein + Prom 46301 - 46360 1.6 46 30 Tu 1 . + CDS 46380 - 47165 662 ## SZO_12770 relaxase/mobilisation protein - Term 47444 - 47488 2.1 47 31 Op 1 . - CDS 47503 - 50034 1710 ## COG1204 Superfamily II helicase 48 31 Op 2 . - CDS 50065 - 50880 616 ## CHAB381_0331 hypothetical protein 49 31 Op 3 . - CDS 50917 - 51129 214 ## COG3655 Predicted transcriptional regulator - Prom 51173 - 51232 8.3 - Term 51219 - 51263 8.1 50 32 Op 1 . - CDS 51270 - 51575 316 ## SEQ_0755 conjugative transposon conserved hypothetical protein 51 32 Op 2 . - CDS 51613 - 51831 276 ## CD0424 putative single-strand binding protein 52 32 Op 3 . - CDS 51743 - 51931 195 ## CD0424 putative single-strand binding protein 53 33 Op 1 1/0.000 - CDS 52759 - 53577 889 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 54 33 Op 2 . - CDS 53614 - 54291 485 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 55 33 Op 3 . - CDS 54373 - 55167 667 ## COG0550 Topoisomerase IA - Prom 55269 - 55328 6.5 56 34 Tu 1 . + CDS 55201 - 55395 70 ## + Term 55547 - 55582 3.3 57 35 Op 1 . - CDS 55672 - 56196 482 ## SEQ_0745 membrane protein 58 35 Op 2 . - CDS 56171 - 56377 235 ## SZO_12840 hypothetical protein 59 35 Op 3 . - CDS 56422 - 57114 560 ## SEQ_0743 membrane protein - Prom 57134 - 57193 3.1 60 36 Tu 1 . - CDS 57223 - 57390 113 ## SEQ_0743 membrane protein - Prom 57596 - 57655 7.2 61 37 Tu 1 . - CDS 58083 - 58286 129 ## CD0418 putative conjugal transfer protein - Prom 58391 - 58450 3.5 62 38 Op 1 . - CDS 58508 - 59398 217 ## COG3451 Type IV secretory pathway, VirB4 components 63 38 Op 2 . - CDS 59471 - 59668 128 ## CD1856 putative conjugal transfer protein - Prom 59748 - 59807 4.4 - Term 59669 - 59740 2.8 64 39 Tu 1 . - CDS 59883 - 60050 127 ## CD0418 putative conjugal transfer protein 65 40 Op 1 . - CDS 60156 - 60494 255 ## SZO_12860 conjugal transfer protein 66 40 Op 2 . - CDS 60507 - 61388 436 ## COG2801 Transposase and inactivated derivatives 67 40 Op 3 . - CDS 61319 - 61882 690 ## EUBREC_2744 hypothetical protein - Prom 62003 - 62062 4.8 + Prom 61739 - 61798 6.2 68 41 Tu 1 . + CDS 61958 - 62281 312 ## + Term 62426 - 62457 -0.6 69 42 Tu 1 . - CDS 62329 - 62526 182 ## HSM_1183 hypothetical protein - Prom 62547 - 62606 4.4 - Term 62657 - 62698 6.1 70 43 Tu 1 . - CDS 62716 - 63363 740 ## COG4271 Predicted nucleotide-binding protein containing TIR -like domain - Prom 63581 - 63640 8.0 71 44 Tu 1 . + CDS 63603 - 63923 159 ## 72 45 Tu 1 . - CDS 64310 - 64528 160 ## CD0412 putative conjugal transfer protein + Prom 64664 - 64723 7.1 73 46 Tu 1 . + CDS 64820 - 65023 128 ## + Term 65092 - 65136 -0.4 - Term 64944 - 64997 4.2 74 47 Tu 1 . - CDS 65130 - 65315 242 ## - Prom 65350 - 65409 3.1 - Term 65335 - 65373 2.0 75 48 Tu 1 . - CDS 65416 - 65898 376 ## FMG_0970 hypothetical protein - Prom 66012 - 66071 5.2 - Term 66662 - 66708 -0.8 76 49 Op 1 . - CDS 66848 - 67483 330 ## HMPREF0424_0529 hypothetical protein 77 49 Op 2 . - CDS 67556 - 67711 67 ## gi|309803804|ref|ZP_07697889.1| recombinase - Prom 67820 - 67879 1.6 78 50 Tu 1 . - CDS 67889 - 68191 242 ## HMPREF0424_0494 resolvase, N-terminal domain protein - Prom 68257 - 68316 7.8 + Prom 68397 - 68456 8.9 79 51 Tu 1 . + CDS 68584 - 68880 254 ## 80 52 Tu 1 . - CDS 68877 - 70319 1030 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen - Prom 70508 - 70567 7.4 81 53 Tu 1 . - CDS 70624 - 71976 1271 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Prom 72038 - 72097 7.5 82 54 Op 1 . + CDS 72332 - 73711 894 ## COG1757 Na+/H+ antiporter 83 54 Op 2 . + CDS 73787 - 74500 588 ## COG0670 Integral membrane protein, interacts with FtsH + Term 74504 - 74560 13.3 - Term 74500 - 74538 6.4 84 55 Op 1 . - CDS 74543 - 75241 657 ## COG1376 Uncharacterized protein conserved in bacteria 85 55 Op 2 2/0.000 - CDS 75302 - 76210 1203 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 86 55 Op 3 21/0.000 - CDS 76230 - 77660 1781 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 87 55 Op 4 31/0.000 - CDS 77664 - 79103 1685 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 88 55 Op 5 1/0.000 - CDS 79103 - 79405 342 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 89 55 Op 6 4/0.000 - CDS 79416 - 80531 1283 ## COG4851 Protein involved in sex pheromone biosynthesis 90 55 Op 7 5/0.000 - CDS 80552 - 82570 2024 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 91 55 Op 8 . - CDS 82584 - 84812 2280 ## COG0210 Superfamily I DNA and RNA helicases - Prom 84849 - 84908 8.9 92 56 Op 1 . - CDS 84914 - 85525 365 ## COG1705 Muramidase (flagellum-specific) 93 56 Op 2 . - CDS 85528 - 86139 689 ## LBA1940 hypothetical protein - Prom 86287 - 86346 9.8 + Prom 85999 - 86058 5.2 94 57 Tu 1 . + CDS 86081 - 86344 64 ## + Term 86362 - 86395 0.2 - TRNA 86198 - 86283 54.5 # Leu AAG 0 0 95 58 Tu 1 . - CDS 86355 - 87497 1768 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 87544 - 87603 11.1 - Term 87579 - 87634 5.4 96 59 Tu 1 . - CDS 87645 - 90308 2648 ## COG0474 Cation transport ATPase - Prom 90336 - 90395 7.5 - Term 90322 - 90363 5.0 97 60 Op 1 5/0.000 - CDS 90494 - 91330 1110 ## COG0171 NAD synthase 98 60 Op 2 . - CDS 91333 - 92811 1582 ## COG1488 Nicotinic acid phosphoribosyltransferase 99 60 Op 3 . - CDS 92862 - 93560 850 ## COG3774 Mannosyltransferase OCH1 and related enzymes 100 60 Op 4 3/0.000 - CDS 93623 - 94711 961 ## COG0438 Glycosyltransferase 101 60 Op 5 . - CDS 94747 - 95472 919 ## COG1922 Teichoic acid biosynthesis proteins 102 60 Op 6 . - CDS 95476 - 96750 1284 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 96820 - 96879 3.6 103 61 Tu 1 . - CDS 96918 - 98015 750 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC - Prom 98083 - 98142 9.9 + Prom 98022 - 98081 11.2 104 62 Tu 1 . + CDS 98189 - 98578 500 ## COG0615 Cytidylyltransferase + Term 98600 - 98629 2.1 + Prom 98634 - 98693 11.1 105 63 Tu 1 . + CDS 98807 - 100060 1261 ## COG0477 Permeases of the major facilitator superfamily + Term 100078 - 100117 7.0 - Term 100066 - 100105 3.2 106 64 Tu 1 . - CDS 100160 - 100861 932 ## COG2188 Transcriptional regulators - Prom 100894 - 100953 3.5 - TRNA 100993 - 101064 60.4 # Gln TTG 0 0 + Prom 100793 - 100852 8.8 107 65 Tu 1 . + CDS 101020 - 101208 201 ## - TRNA 101072 - 101153 64.5 # Tyr GTA 0 0 - Term 101224 - 101257 2.4 108 66 Tu 1 . - CDS 101265 - 102173 1122 ## COG0039 Malate/lactate dehydrogenases - Prom 102204 - 102263 12.4 - TRNA 102285 - 102359 61.0 # Gln TTG 0 0 - Term 102352 - 102389 4.1 109 67 Op 1 2/0.000 - CDS 102416 - 103579 1374 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase 110 67 Op 2 1/0.000 - CDS 103579 - 104799 1333 ## COG1257 Hydroxymethylglutaryl-CoA reductase 111 67 Op 3 . - CDS 104784 - 105950 1431 ## COG0183 Acetyl-CoA acetyltransferase - Prom 106087 - 106146 6.5 + Prom 106098 - 106157 8.8 112 68 Op 1 . + CDS 106188 - 106748 480 ## LCRIS_00491 aggregation promoting factor 113 68 Op 2 . + CDS 106681 - 106836 72 ## - Term 106756 - 106793 4.0 114 69 Tu 1 . - CDS 106821 - 107105 246 ## gi|312873146|ref|ZP_07733205.1| hypothetical protein HMPREF9218_0276 - Prom 107175 - 107234 9.2 - Term 107231 - 107284 14.0 115 70 Tu 1 . - CDS 107385 - 108758 1643 ## COG1114 Branched-chain amino acid permeases - Prom 108786 - 108845 6.1 116 71 Op 1 1/0.000 - CDS 109149 - 110303 1472 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 110327 - 110386 4.9 117 71 Op 2 . - CDS 110413 - 111252 849 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen - Prom 111287 - 111346 6.2 118 72 Tu 1 . - CDS 111646 - 112815 1080 ## FMG_0026 hypothetical protein - Prom 113001 - 113060 3.9 - Term 113004 - 113034 -0.3 119 73 Op 1 . - CDS 113064 - 114011 1127 ## Apre_0464 hypothetical protein 120 73 Op 2 42/0.000 - CDS 114021 - 114815 732 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 121 73 Op 3 25/0.000 - CDS 114815 - 115486 272 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 122 73 Op 4 . - CDS 115479 - 116390 893 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 116450 - 116509 9.0 - Term 116491 - 116539 8.7 123 74 Tu 1 . - CDS 116554 - 117045 485 ## LPST_C0132 integral membrane protein - Prom 117109 - 117168 7.8 124 75 Op 1 10/0.000 - CDS 117185 - 117643 624 ## COG0691 tmRNA-binding protein 125 75 Op 2 . - CDS 117646 - 119922 1368 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 - Term 119955 - 119987 -0.4 126 75 Op 3 . - CDS 119993 - 120211 207 ## LAC30SC_02310 preprotein translocase subunit SecG - Prom 120261 - 120320 11.9 127 76 Op 1 . - CDS 120345 - 121643 2068 ## COG0148 Enolase 128 76 Op 2 13/0.000 - CDS 121694 - 122449 917 ## COG0149 Triosephosphate isomerase 129 76 Op 3 26/0.000 - CDS 122467 - 123681 1682 ## COG0126 3-phosphoglycerate kinase - Prom 123729 - 123788 2.2 - Term 123720 - 123756 8.7 130 77 Op 1 5/0.000 - CDS 123790 - 124806 1191 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 131 77 Op 2 . - CDS 124863 - 125894 917 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 126139 - 126198 75.9 + TRNA 126122 - 126193 40.0 # Pseudo CCG 0 0 + Prom 126122 - 126181 76.1 132 78 Tu 1 . + CDS 126408 - 126992 707 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Term 127007 - 127047 6.1 - Term 126989 - 127040 10.4 133 79 Op 1 . - CDS 127101 - 128357 1179 ## COG0714 MoxR-like ATPases 134 79 Op 2 . - CDS 128373 - 129869 1389 ## Mahau_2494 von Willebrand factor type A 135 79 Op 3 12/0.000 - CDS 129862 - 130806 1067 ## COG1481 Uncharacterized protein conserved in bacteria 136 79 Op 4 12/0.000 - CDS 130806 - 131840 1146 ## COG0391 Uncharacterized conserved protein 137 79 Op 5 . - CDS 131853 - 132728 1009 ## COG1660 Predicted P-loop-containing kinase 138 79 Op 6 7/0.000 - CDS 132780 - 135596 2937 ## COG0178 Excinuclease ATPase subunit 139 79 Op 7 . - CDS 135624 - 137621 2190 ## COG0556 Helicase subunit of the DNA excision repair complex - Term 137631 - 137660 0.5 140 80 Op 1 1/0.000 - CDS 137679 - 139406 1920 ## COG1109 Phosphomannomutase 141 80 Op 2 . - CDS 139423 - 140349 532 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 142 80 Op 3 . - CDS 140369 - 141388 1143 ## COG0240 Glycerol-3-phosphate dehydrogenase 143 80 Op 4 10/0.000 - CDS 141425 - 142258 861 ## COG0682 Prolipoprotein diacylglyceryltransferase 144 80 Op 5 . - CDS 142273 - 143211 1142 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 145 80 Op 6 . - CDS 143215 - 143511 168 ## gi|259501055|ref|ZP_05743957.1| hypothetical protein HMPREF0520_0565 146 80 Op 7 6/0.000 - CDS 143528 - 144526 1064 ## COG1186 Protein chain release factor B - Prom 144553 - 144612 4.3 - Term 144639 - 144669 1.3 147 80 Op 8 . - CDS 144686 - 145876 1516 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) Predicted protein(s) >gi|311091283|gb|AEKJ01000024.1| GENE 1 3 - 8625 9534 2874 aa, chain - ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 2492 2845 737 1042 1052 65 29.0 1e-09 MFGKNNKYMRDLKQREKVTYYGIRKFSVGVVSVALSSLFLLGYANSAAASSTVATDVQHS EKAKIKVDADINKDKAEKVDKNSLADSAPKKEEAEIKAKSKVKAKINEIIHDKKQVDKVL ASVKSAKNGQAVVYQDRSGDTVSNPEWLTKPNILELQRYRGVNDQGEKKPVGSDNVGEWN DVTLKTDMYAHVEERNGSKYLVFDVFFNNDGRSMLKHSNQQQYVWQIPYQIADLNNGGYK GDTLSNLSIDFYDKNASSAYNAVLSRDFSNFYKNNANSAKLNPLQTDHHFGQSIYLYTLG VRAGRSRNQDLSDTFHSNKDDQTIKNATKLSSPYSSYSYGIGVRTTAVNEAAHLHCDVKL RPGVTTEDIQNAYTWANTSSYGRTTNSAYTFISGREPYGEENLPRKKSDSEAPKLYLNGQ PMTDGKEFTTYQGESTPLKFEASDNEGKLKNFKVTGMPSGDFSVDNQSATEAAKYSKDYS QEKFENKVNGQPKEKIYDIAVTATDEAGNTTSHSVKVQLKNQSSKYAAPTADVITVKRGE KPSNDGILAKLKYNKEDDKKGTPSVVSIPDTNLKPDAFKTGDTADAGSAVVKVTYSDGSY HTVNVPVKVKKPDNLANTLTGKTVEVKVGDPLKQTADKKVDAKQYVTTTGNVQPQKVEFE NEPRTDLAGTFKRKAIATYPDGSKNETDVTFKVKPLKPVIQTNLIGHANQENQKVTVSVG DGVPDGAIVRLTDDKNNTLGEGQVNNGSAEVVIKDKMPDNTKVKATTIVKNGGEITSDPS DPSNVSQDDVAPTLTVSAPSEITAGDDLTFTFDAKDNVKVNFEIANCIMSGLSDLDPGNL INILTQQKTTYSSYQDDHRQGTTTLLSVPDIAVGKREFTFKVTDDANHTVTKKVSVTVYP KLKLNVEPITVPLGGTLPDAKVALGKTEGIAEVKNKKGLVDIPAPTIQWVEQPKTDKVGN ALPGKVRITFNDNRNGGKPVDVIVPVNVQDQNKPEIKVYKKENGKYVEITDKDNDGYIKL DSYAREDVDFKITSTDNSGQINDLSMMPIPGVKSSKPDGTGSKDNPKSFTLTGQAPLGDK YSRVVKAVDPSGNTTTLKVRLYPHNQSEKYGNKVQEKLLTYKMSDGNKYPDPKDGISQEG NDFPAGSTYSWATEPKWTDPTSGKDGKGTPKEVSICVTLPDGSTKNVKSKLTIIDDVPPV IEEPEDAETVTKDNHTVYRVKVARGGETKISLKLHDTSGQLQSLTTAGTSFVTAGTLSKT TGATIDNPATVDLTVKAPNQAAEEGKPWQETVTLTDAKGNTTTATLELYADKDADLYNPT VTPVVKANPTDTVTIDDIKQAVTKDSKYPKNNYADPTVTVDGKIEDYNKDNKKDYFVPVT VTYPDKSTDHVQVHVTIGNDTQAAEYEAKKGYISVAYGTSKDTIKNKVENNNENQVKVKN GKKTVNKTEYTVQVLEESSLPDGKTAGKFEVPVKVVYKDGSADTTTVKVTVEQPQSKSDV SQSIGQVEKEYGQATQENDVLGAIKQDDGPKVSSHIKAKTIVPGQTLPDGKHPGTQKVRV KLTFDDGSHKVVEVPVITKDPLNKQYEPVATELKKDYGQPATNEEIEKQVTVQDSSKQPA PKENVTKIEVVPGQTAIDGKQPGTVKVQVKVTYKDGTSDIVNVPVTVADPASVTYPPKAD ALTVPWGTKQDDIKKQIVSKVTIDSKYPTDKTKPKIEVAKNANVPDGQTSTKVNVPVEVT YPDGSVATVQVPVTVGNKQADNYDPTVTPIKKTYAERKITADDIKKAITINGLDPNKGDY TISVDDAIPADGFAEGHTDVAVTIQYKDGSQDKIKVPVIIGQSEAGYTEKNLPQANTIYK NYGEEIKDSEITGAVSVPHYTKSDKQTPGDANKLQFTIAKDSAKPDSHKSGKTLVKVVVT YEDGSQATVDVPVIVKAPDTEQYTPAATTVEKEFGKQTSEDDIKKAITISGYPEDKKNKI QYKVSTDKIPDGQTAGDFTVPVEITYADGSKGNVDVPVKVKAPQPQTTDNTVFVGTSPDA SDSISNKDKYPKNTIFEWEKTPDTSKAGEPTGNILIHMPGQKDPLKVENVKVKVVAVPET QSINVFEGETPEASKGIKSKEGQTTTAEWQKDSAGVAQIPDTSTAGTVKGKVVVKVSGVQ TPATVEVTVNVLPAPKGGTINTNVNGSVDPKSGVKGNDKYPNDTKFVWKDGNPDLTKPGI VTKKVTVTVPGMKAKEVEVTINVLPNPAGQDQVTLQGQTPDPKKSVADHDKYPKGTTFNW TKEPSTDNPGETAGKVEITIPGSDKPITVDAKLKVIPYPTKQHRVVLQDPEGKTPLNAKD SIKNADKLPSDPNNATTFIWKDGKVPDNKVPGNKNGVVLVKIPGVDKEIEVPTTIEVVPN PNANDGIKVAKGGDPKPEDSIANIGDLPSGTTFKWKKDHKPNTENPAEKVPGVVEVTIPG IDHPIEVPVNVVVTDKPFINNGAATNDSGDKNKTEITGKSLPGTKIEVQDENGKKIGEGV TDQEGKFKIAVTPKQAAGKQLKLIPTNNNQTGDATTVTVTEKPAKPTIDTPENGSVTIKP ADNANNVSIDVDMVPNTVNEVIDENEPQPKQTIAAHKDEDGKWKLDGDVPTGVTIDPETG AITIPAEAVKDGSPISAIAKNKDGQSSDPAKGTVGFIKPQIINQSANNDDTKNKTIVTGK TLPGAVVKIVGPNGHEFTDSKTPVKADKDGNFTVEIPKQEQGTLLTITPINGPKAGTPVN VAVGISITDQKAKNTSDKPDKTVVSGETAPNAKVTITDTDGNPIKDKSGQPVSVTADDKG HFTVDIPKQADGTDIVLTPSLKNGDKPNLVGEPVNATVKDTPVVKDGNAINDPK >gi|311091283|gb|AEKJ01000024.1| GENE 2 8873 - 9259 419 128 aa, chain - ## HITS:1 COG:SA1057 KEGG:ns NR:ns ## COG: SA1057 COG2314 # Protein_GI_number: 15926797 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 64 128 2 67 67 74 53.0 4e-14 MAKVLKTNINKTTIGLDNGSIEEVDTASLDFIPQVDDELEVYKTGDEIIVRKCNKEQFYH NGRRVNKLVYALLAIFLGSFGIHKFYAGRMVGIVYILFFWTCIPGLIGFIEGIAALVKEA DSDGNIYL >gi|311091283|gb|AEKJ01000024.1| GENE 3 9446 - 14773 7264 1775 aa, chain - ## HITS:1 COG:no KEGG:HMPREF9243_0550 NR:ns ## KEGG: HMPREF9243_0550 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: A.urinae # Pathway: not_defined # 652 1292 2 639 764 276 35.0 9e-72 MKIKLSGDNHENASLIHPLRPATDDESSDQQMKVNFSFDVDGSEIKEGDYFDLNLSENVN LYGATSKKADIQTKLYVGNDVVAKGVYDAENHRMRYTFTKKAQEYGHFTQRVMEPVFIDA KGVPVNNKNVDVEASIGSHKSQKEVEVNYDLPVKEGEDNLNSNGNANLSDIDESTGTYKE TIYVNNKQREQNNTRILIENGGKNSFTTFDGQVANSIEVYKVKDPSKLSGSMDLDMDNLE KVSPTQYDQKLKADKSGIEINLKNKGTKDVYVVRYNGKYDASKTANIKTTIIADPQNNPY ETAKQFASVSTRRPDDESQRLLGSFYDTHIYQTVDKNGNLIRTDYVQDFKHFAEGRENET YTTEQIQVDGYTLKKAVAANKANCNQDGSPATGNFTAQVTKAVTYYYTKQNDKGFFKAIH VYQTVDDDGNILSTDAIESGNLQSGYDNQQYTGDIKGRDGYTFTHVEDVDGTTKKDQQVT GNFEIDKTKKATFYYQKVVQKGHFKEVHVYITKDKNTGKVTSIETVEGNEKSGLADEQYT TEKKDREGFTLTKVEGKGGHPKFDNEGKKTSANYIVGERQVVQYTYEREVATGTFKETHI YITKDEDGKELARDVITTEPQRGNETEEYITEKKDREGYTFVKTENPVGDPKYSEQGEPT KGNFVGDKDQAITYVYEKTVKKEVVPEPKKGTFKETHIYRVKYKDGKVISESTSEKIVTG TEKETYTTAKIDKEGFKFIEAKDPKENPSYSETGDSKTGNFKADKEQAITYVYEKEVERP APNPEPKKGSFKETHIYRVVDEEGKTVSENSTERIVSGNENTEYTTSKVDKEGFKFVKAQ DPKENPSYSENGDSKTGKFVGDKTQEITYVYEKKVKKPAPKPEDKKGSFKETHIYRVKYK DGTIVSESSSERVVSGTEKEKYTTGKVLRDGFTFVKTQDPKEDPTYSQDGLFTQGNFKAE KDQAITYVYEKVIEKPAPEPEAKKGTFKEIHVYKVVDEDGKVISESSSERVVSGTEKETY TTEKKEKDDFTFVKTQDPKEDPTYSQEGNSKTGNFKAEKEQSITYVYEKKVKKEVPTEPQ KGTFKEIHKYITKDYYGNVIGSNEVEKVFTGSEKEKYTTEKKEKDDFKFVEAKDPKENPS YSDKGDHTEGNFVKGKDQEITYVYERKVAPQPKRGTFKEIHIYIIKDEKGNIIDTNNTET MTIGNENEEYTTKKIDKKGYTFVKTQDPVENPSYSDKGDSTKGKFVGDKDQAITYVYEKT VKNPEVKQGNFKETHIYITKDEDGKVVSTDRVEKEVSGNEGDEYTTGKVDKEGFKFVKTQ DPKENPSYSDKGDSTKGKFVGDKTQEITYVYEKVVQKETPAPAPEPKKGSFQEIHIYVTK DEDGNIVKTEQSENKVNGHDGDEYTTEKNEKDGFKFVKTQDPKDNPTYSTDGKSTTGKIV GNKDQSVTYVYEKVVKKEQPAPAPEPKKGSFQEIHIYVTKDEDGNIVKTEQSENKVNGHD GDEYTTEKNEKDGFKFVKTQDPKDNPTYSTEGKSTTGKIVGNKDQSITYVYEKVVKKEKP TPCPVCPTPKPEPKSGSFKEIHIYVTKDEDGKVVKTEQNENKVDGRDGDEYTTEKNEKDG FKFVKTQDPKDNPTYSTEGKSTTGKIVGNKDQSITYVYEKVVKKEKPTPCPVCPTPKPEP KPEPKPQSQPEPKPEPQPQPQPKPEPQPQPQPKPEPQPQPEPKPEPEPQPKPEPKPEPKK LPQSGSSEEGYALGMAMLGLSGLMTIVDIKRKNEK >gi|311091283|gb|AEKJ01000024.1| GENE 4 14874 - 15071 314 65 aa, chain - ## HITS:1 COG:no KEGG:FMG_1333 NR:ns ## KEGG: FMG_1333 # Name: not_defined # Def: putative biofilm-associated surface protein # Organism: F.magna # Pathway: not_defined # 1 58 1 55 2577 63 55.0 2e-09 MNDKMQMHRLIEQKRIEGADKKPRYGMRKLTIGTVSCLLGFASLLAFTTPNFSQAAESGN TGGGE >gi|311091283|gb|AEKJ01000024.1| GENE 5 15667 - 16089 433 140 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0260 NR:ns ## KEGG: HMPREF0868_0260 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 137 1 138 148 156 60.0 3e-37 MSIFLTRNADIHHMVQKNFGKTDNYLVANKHNDVLKGLFKLLLSRLYYIFDGGRMFVLYF DNQGIHEKEISFTDNAPFLLIPWHEVRNFKVKDKRNKVYIDVDHLGKIYSYEIDFNGKLP QGNRERFMQLSEHNFYRDSL >gi|311091283|gb|AEKJ01000024.1| GENE 6 16091 - 16315 382 74 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0259 NR:ns ## KEGG: HMPREF0868_0259 # Name: not_defined # Def: Xre family toxin-antitoxin system antitoxin protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 71 1 71 71 117 87.0 2e-25 MPELEVDNKICEYRKALGLSQHKLAKAVGLKRRSIMAYENKTISPTVETAYKICKVLGKD IKEVFIFKDIKEDQ >gi|311091283|gb|AEKJ01000024.1| GENE 7 16485 - 21869 6340 1794 aa, chain - ## HITS:1 COG:no KEGG:SERP1011 NR:ns ## KEGG: SERP1011 # Name: ebh # Def: cell wall associated fibronectin-binding protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 458 1681 2658 3843 10203 325 28.0 2e-86 MKNNKNHNLIERSNYEKITHYSIRKVSFGAASVAIAVAFMFLGGRSVSAAETNNAPATNQ SATANTKDEAANQVFDAPSKDANVTELNTKLQALPDKINNNTKINEMDELGATTGVEAGK VKDITEFGGWTAINGGKFIIAKKSDKGVFPIETVNSVTGGRGNFVTYLNESTFDRKGNYM LFLGKVRTLFNKEQQTVDGKPYKDNDNGVDRNDGKGLVGYNGIEKTFKAYSPETGSKVNI EFKTGFTGDMNGHKANYKVEVIAKTADGKTEKIYEQTFDPSKSIDNDNMKVTPANIGGDA HFTTSRSISRDDITKKLEDPKLVDKLGKNSGTFTSKNITLKPGVVEYTTYISAANSKVLG MGYNTNWEHVALPISGTDFNIDQDTNILAKDLLKKIYNKLIATKDKDERGMTEESKKAYD DQLEAVKKILDATTLSETKDYKTETKTTLEKHKGLTVDKSGLEQNKKALDDFIASISTDG KTKDSKDAYDVKKTEADTAVADAKKVLDNQAATVDEVADALANVKIKKAELAEAKAKLVD VMTGDQKADLEKAEETLKLPDTKEKTPASVAAYQAAMDKIQADLTAAKTTADEVINKKEN ATKAEATDAQVKIALVKVKLVEAAALLKDKADKTTLKAAKDELAKLTSEADPTTGKTQTS KDAYDKAKRSATQAEADAQKIIDDENATPEAVTAALTEVHNKNSELEKAKLALVDSITDE QKNALAKVDDLLKLADTKGKTPASVTKYNDEIAKIKDDLEKAKNDAKEIVNKANEKEASK AEAETVLAKVATLNSKLVDAVAILKDQADKNELIAAKKDLAKLTSEADPTTGKTKASKDA YNQAKTAAKQAETEAQTVINDANATPKEVAEALAKVNDKKAALEEAKTKLVDAMTNEQKL DLAKVEDDLKLPDTDTKTPDSVKAYNDAIKQFQAELETAKQEAKTVHDKGDNATKAEATA AQEKVAAVKEKLTKAVDLLKDKADKTALKKAKEDLAKLTKEADPTPGKTPASKAVYDKAK ADATKAETAAQTIIDDENATPEAVADELAKVNKKKADLEEAKTKLVDAITADQKAALAKV ADDLKLADTKGKTSNSVNAYNTEIAKIQDELAQAKQTAKEIIDKKDEASKAEAHELLAKV ATLNSKLVTAAGALKDQAVKTELVAAKKKLESLIKEDPTKDKTTTTKTAYDNVKKTAEQL LTKAQNLIEDDNATQDDVDAILENLLFKPDDLAAAKTKLVDAITVEQKAALAKVADDLKL AETTGKTPDSVKAYNDAVEQIKAELEAVKQEAKTVHDKGDDATKAEAKEVQDKIAEVKAK LTKAAELLKDKADKDALKTAKAELAKLTSETDPTNGKTQTSKAAYDQAKADATQAEADAQ KVIDDDNATAEAVAAALAKVNEKKSALADAKAKLVDAITAEQKAALAKVADDLKLAETTG KTPESVKAYNDAVEKIKAELEAVKQTAKTVQDKGDDATKAEAKEVQDKIAAVKAKLTKAA ELLKDKADKDALKTAKAELAKLTSEADPTNGKTQTSKATYDQAKADATQAEADAQKVIDD DNATAEAVAAALAKVNEKKSALADAKAKLVDAITAEQKAALAKVADDLKLAETTGKTPDS VKAYNDAVEKIKTELEAVKQAAKTVQDKGDDATKAEATEVQDKVAAVKEKLTKAAELLKD QVSESHTDPVEIDTPTDLDNPTNLDNQNNVSDNQDSNADKIVQIVTKPTETKVNTTENNH GNGTITTVESKANKQNQAKLPNTGAKYSTATIMVAIAGILLGFGLAAGRRKEKE >gi|311091283|gb|AEKJ01000024.1| GENE 8 22095 - 23159 871 354 aa, chain - ## HITS:1 COG:RSc3292 KEGG:ns NR:ns ## COG: RSc3292 COG3274 # Protein_GI_number: 17548009 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 6 351 3 334 336 109 28.0 8e-24 MKRKIYCDYLRLIATFAVVVLHVSASNWYGADVHGLAWQSFNFYDSATRWSVPIFVMISG ALFLGREIPIKKIYSKYILRLVVAFFTWNLFYAIVTQETSRHGIIYGLKTHKEAIVSGHY HMWFVIMIIALYMCIPFCKKIVSDTLTTKYFLILSFVFSMMIPWIVQLLKDYVVGSNEQL VKFVGIVNSKLSIMSMNMMLGYSFYFVLGYYMDKIELNKKQRIIIYILGIIGLTFTILVD LNLALKTHQPCGNYYGNFRVNVFLEVVAVYTFFKYLKYKNWRLNKFVYLISQYTLGIYLI HAFFIEKYASIFKFNTLSFNAIVSVPVVSVVVFVSAIIVSALLKYIPIIKKYCV >gi|311091283|gb|AEKJ01000024.1| GENE 9 23374 - 23976 621 200 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_11545 NR:ns ## KEGG: HMPREF0573_11545 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 1 200 1 200 200 267 67.0 2e-70 MANSRKFVAKTKDVSLTVKRAESFSISYVDCEKDMFQIEENQDGIKFFQREKASACYWFG WLAKGNPEVVIMLLEDVDVCEIEAEVNQVLVTDIKADKIYVKVKNGKAAVRNVQANDVFI KCVNGKAVAHNVEATTSCTVDTLNGMSVLEGTITRDASLEVTCKNGITEVSDKNKVNLGC RTDGCAHYVVHCLNGKAAVK >gi|311091283|gb|AEKJ01000024.1| GENE 10 24591 - 24809 180 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKYLGHKRRFIPHKKSSVTYDKSLILINVIIESSIKSRPCRNKILSILTTQSMWKEYSQ DTASIEQLFNFS >gi|311091283|gb|AEKJ01000024.1| GENE 11 25054 - 25560 215 168 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|50365462|ref|YP_053887.1| acetyltransferase of 30S ribosomal protein L7 [Mesoplasma florum L1] # 1 166 3 169 170 87 32 3e-16 MRLIRPDRKYIQSYIEANEEDEMFRPNAERRFNHPETIVESSYNLEHGINLPANYVKSTT FWLIDNEKFIGEISIRHELNSFLINYGGHIGYEIRQSECMKGYGTKMLSMALAYCKDTLN LHKVLITCDDDNIGSIKVIENNGGILENKVKNSLSRGNVITRRYWINL >gi|311091283|gb|AEKJ01000024.1| GENE 12 25576 - 25737 172 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312873062|ref|ZP_07733121.1| ## NR: gi|312873062|ref|ZP_07733121.1| conserved domain protein [Lactobacillus iners LEAF 2062A-h1] conserved domain protein [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners LEAF 2062A-h1] # 1 53 1 53 53 94 100.0 2e-18 MDVQKFREVIRRRNETHDEYDYGVEMCDCVVFSITMKAKQTSNLILKNCILRI >gi|311091283|gb|AEKJ01000024.1| GENE 13 25737 - 26111 502 124 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0167 NR:ns ## KEGG: HMPREF0868_0167 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 124 1 124 124 170 79.0 2e-41 MDVQKFKEVIRRRKETHDEYDYGVEMCNKEEIQILAEDIPSTIEYLKNDCTADEFVWISE IIDDLAEKTRNRELMECYKSLMGKFPEESKRYHVDFCIECAEDFLEDTVEDYDSNQQFKK KGKK >gi|311091283|gb|AEKJ01000024.1| GENE 14 26111 - 26596 710 161 aa, chain - ## HITS:1 COG:no KEGG:Fisuc_2497 NR:ns ## KEGG: Fisuc_2497 # Name: not_defined # Def: hypothetical protein # Organism: F.succinogenes # Pathway: not_defined # 1 153 1 154 155 178 59.0 8e-44 MGTTKSGRVLNTRGAAGSASQFAVVHSNEGAYTKPQKDNHIRLKSGGHGQTGLKELDKYG IEYHIVKTYPNGVRVGYVPRHKKHIKQDGINQAWFPASWTSKDIKHAGEHVANLKGNKHV KDGVIVFGNWKGVRVGVIRTHGQIGTIFPDSNQSFKKRGKK >gi|311091283|gb|AEKJ01000024.1| GENE 15 26825 - 27418 456 197 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0163 NR:ns ## KEGG: HMPREF0868_0163 # Name: not_defined # Def: toxin-antitoxin system, toxin component family protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 191 1 191 194 300 85.0 2e-80 MYRSGIEYDKLDKLIYSIYVDYNIQSFPIDEKDLCRKMKIALVPYSAFSDEAKKLLQKKS NHAFFVKESKENPPTIYYNDTFESEGSIRLSVFHEIGHYICEDEDDSKDDLADYFARHFM CPTAYLMLKGIESPNEIVAFCGVSFQAACNASANIANRKKKLGNKLLSYEKEFIKNIDPI TFWFYELTDRGEKVMNV >gi|311091283|gb|AEKJ01000024.1| GENE 16 27411 - 27731 438 106 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0162 NR:ns ## KEGG: HMPREF0868_0162 # Name: not_defined # Def: DNA-binding helix-turn-helix protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 106 20 135 135 165 83.0 5e-40 MSWQEKVKNLMNDRGINQKQLSQLSGITESSVSRYLRSERRPRLDVVVNFAKAFGVATDY LLDDGEESEASAYKTISTAIARKGGELTPEEKNELIALLLGSKADV >gi|311091283|gb|AEKJ01000024.1| GENE 17 28002 - 29312 1027 436 aa, chain - ## HITS:1 COG:HP1165 KEGG:ns NR:ns ## COG: HP1165 COG0477 # Protein_GI_number: 15645779 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Helicobacter pylori 26695 # 33 420 2 372 386 142 31.0 1e-33 MFFTSKTFRSQKRCHAMHHGVSENNMHTLPTSLQRNIFVYYSVAAIYMLSISLPHAILTP LLIQKGLSFADIATIQVAFSIAVALCEIPSGILSDAFSRRTVYLWSKFLIIAFFLIIYFA HGLQAMTIAWFIYGISAALDSGTIGNEIILRVRDHCDHSGESSAKMVDTLVRLDTRIATI CMIISGFLGSFIYQQIGFSLYWFSLLGATICIVIIFICFPAKNIGTIPQGNSASITKIKH VFTEGLRELIDNKNVRIYFCALATTQIFFQSHFQFWQSFFLEIGMQQHSLGLLYVLFQSV SLVVSFVSMRGILARYKLASILPYVLCATLFCIILLLTSVNIYIKIFAYSIFVAIFWIIS NDINAQLRQNLTEKALSTLTSLASMMTRIASIIVLSILSVLLHLLPVHVVIPLMFAIAMI TTLASYLYASYKNANC >gi|311091283|gb|AEKJ01000024.1| GENE 18 29506 - 29805 417 99 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0424_0740 NR:ns ## KEGG: HMPREF0424_0740 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 1 99 1 99 99 173 93.0 2e-42 MDKNENINLPTKVTITLDLDKLYNELKENGWKPDRVAKYYKHYILKHISKEDTILGPDES VRYLIDLLTTISSRHFLSMIEPGPGKDALIKRVIYEYEK >gi|311091283|gb|AEKJ01000024.1| GENE 19 29902 - 30519 576 205 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0739 NR:ns ## KEGG: HMPREF0424_0739 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 6 205 37 237 237 213 67.0 4e-54 MGNNNLKEKIKNARKSVGKGKFKNLYWWVIDLENEVDIYGDKYNKIFLMPYTFGFTEDDL NTNISTDIIDLKNYEENDELFDEEGNNLFNRISKQKNYKKAKIHSNNYNVDITTGNFHPH DALKGVIKETEIKQIMLVRNTYKNGSHYGVLYDNDCPKDEEKNFIILRDEANKLRYIPKK CIKLVKENEEPEKTLNDFLNAIGAE >gi|311091283|gb|AEKJ01000024.1| GENE 20 30589 - 31062 526 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804456|ref|ZP_07698523.1| ## NR: gi|309804456|ref|ZP_07698523.1| hypothetical protein HMPREF9213_0967 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0967 [Lactobacillus iners LactinV 09V1-c] # 1 157 1 157 157 260 100.0 2e-68 MKHKSTVKRNGGGRIQMTEEHTIVSAAKGNRLQLIPLIAVLAGLGILVYRFWFNTSALYA PFYALMACGVVGALIQLLVAITTTCLYRRKVIAIVDATVIIITLLTIIFGEYIACNVLKL SVISYAWSPGTQINTVATILSGAVVTLLVFCEQRKIK >gi|311091283|gb|AEKJ01000024.1| GENE 21 31822 - 32847 997 341 aa, chain - ## HITS:1 COG:CAC3407 KEGG:ns NR:ns ## COG: CAC3407 COG1073 # Protein_GI_number: 15896648 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 58 299 150 397 431 110 32.0 3e-24 MKKIFFSIFSIVIILVILVFSIRIYNDYKYKDINVLNFPKYYKDVTNISLYPTDIDGVDV TYVDEGRMQGFRFVPKKKSHKGLVICYGGSEGSPNFESAKRLAEEGYETFALFMFGMKNQ EPTLTKIPLEQFEDVINYINKNIKDNKPISVLGASKGAEYALNLACKYPEIDNLILISPS SYNFAGLDFKDYGSSWTYKGKQLPYIDTKKSSFSSFLKNIIVPTIIKSPISYKETYKSAI EQDPSSQEKLIPVKNVKANILMIVGEDDLMWDSFAMAQKIKEKNPNAKIYSYKGAGHIFA GNGVLNLGRIRIATGGTIEGNEKARSESRKTIATFLKENHK >gi|311091283|gb|AEKJ01000024.1| GENE 22 33150 - 33386 270 78 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21053 NR:ns ## KEGG: HMPREF0421_21053 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 41 1 41 51 63 75.0 2e-09 MMFLKSLTADGQPWGELGFRKIRVKNYYIYFCVDESRKKFKYSRLFTREETRLSNWNNCN VTRCQASLKPFNDSFSYR >gi|311091283|gb|AEKJ01000024.1| GENE 23 33358 - 33684 476 108 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21067 NR:ns ## KEGG: HMPREF0421_21067 # Name: not_defined # Def: toxin-antitoxin system # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 8 108 7 107 109 177 92.0 1e-43 MQHAYGGLIDMAVTKKANVNVRIQENIKQQAEQILETIGITRATAIDMFYRQIFLNKGIP FSLTIPKSLPAQDDMDEKTFNALMAKGYDQAAQSDSYPIDDVFEELDR >gi|311091283|gb|AEKJ01000024.1| GENE 24 33747 - 35225 1273 492 aa, chain - ## HITS:1 COG:CAC0528 KEGG:ns NR:ns ## COG: CAC0528 COG0488 # Protein_GI_number: 15893818 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 492 1 492 492 502 52.0 1e-142 MSAIKIQNLTFSYYGYVKPIFENVSFSFDTNWKTGLIGRNGIGKSTLFKLLLNQETYQGK ISKDVEFIKFPPNISDTSKLGIDLYKELISDDEEWKLFRELNLLNVDENLVYREFKTLSK GEQTKILLAILFTKEDGFLLIDEPTNHLDMNGRKILSEYLKSKKGFLLISHDRNFLDGCI NHVISINRNSIDVQSGNFTSWYENKLMKDKFEISKNEKLRKDIKRLKEAARQSKIWSDKI ENTKNGVKVSGIKPDKGRIGHQSAKMMKKSKNLEHRQNKAIEEKQSLLKDIEIKESLLLH PLHHHKNPLISVSELSAHYGERQILSNLSFEIEQGDIVAISGRNGSGKSTLIKILLGINH EYTGEIKLASNLKISYIPQDTSNLSGSLNEYIHSQDVDETLCKTILRKLDFARELFEMDM IDYSDGQKKKVLIALSLSKPAHLFIWDEPLNYIDVISRIQIEEIIKEAKPTLIFVEHDKR FVEDIANKIIQF >gi|311091283|gb|AEKJ01000024.1| GENE 25 35401 - 35595 279 64 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0396 NR:ns ## KEGG: HMPREF0868_0396 # Name: not_defined # Def: toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain-containing protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 62 1 62 62 108 95.0 8e-23 MTTAINIFLRTTIRENGIPFSLKLEAPNDTTIAAIEEGRRIASDPSVKGYRNMEDLKAAL DLGN >gi|311091283|gb|AEKJ01000024.1| GENE 26 35576 - 35770 131 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLIAVVILSPSSEKILSACSLIYLSVLIFKFVVAIYGTSLLFYHTQILVYIQHVVITIHT ILVN >gi|311091283|gb|AEKJ01000024.1| GENE 27 36085 - 36390 459 101 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0421_21051 NR:ns ## KEGG: HMPREF0421_21051 # Name: not_defined # Def: toxin-antitoxin system # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 100 1 100 101 166 86.0 2e-40 MANTNVVYARIDTTLKENAESILNQLGITPSSAIQMLYSQIVLQKGMPFELRLPVNKPIA LGSITRDELDKELQKGLDSLRSGKSYSADEVDLFFAKEYGA >gi|311091283|gb|AEKJ01000024.1| GENE 28 36387 - 36713 256 108 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0424_0746 NR:ns ## KEGG: HMPREF0424_0746 # Name: not_defined # Def: toxin-antitoxin system, toxin component, RelE family # Organism: G.vaginalis # Pathway: not_defined # 1 107 1 107 110 171 79.0 9e-42 MSTTYNIIYSPQAFLDLSELYEYIRFTLQVPKTAEKQVSRIRKTIRSLNTMPMRHPLVEW EPWHSMGIRRVPIDNYTAFYLVDEDKCSVTVVRIFYAGRNIKNIINNK >gi|311091283|gb|AEKJ01000024.1| GENE 29 36979 - 37611 943 210 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21058 NR:ns ## KEGG: HMPREF0421_21058 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 210 1 210 210 379 96.0 1e-104 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY LLDKDNAIDLSIIKKPIDVAKYGLNAKLGVRKKIKIKEQIIRDEYADAEIIMLTVTKFIP NSSEKFMDNFIGWITTLFSDIPLFDTFAFGKAVESIGSEQYYLVNKKEKQFFVLITDEYI ISRMMRVKFTDKKMCVGDKEFTQVGKLRDK >gi|311091283|gb|AEKJ01000024.1| GENE 30 38039 - 38218 154 59 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21066 NR:ns ## KEGG: HMPREF0421_21066 # Name: not_defined # Def: addiction module toxin RelE # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 10 59 58 107 107 81 80.0 1e-14 MMFLKSLTADGQPWGELGFRRIRVKNYYVYFCVDENKREVQILAVIYAIRDQATQLEQL >gi|311091283|gb|AEKJ01000024.1| GENE 31 38190 - 38375 287 61 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21067 NR:ns ## KEGG: HMPREF0421_21067 # Name: not_defined # Def: toxin-antitoxin system # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 61 47 107 109 111 90.0 1e-23 MFYRQIILNKGIPFSLTIPKSLPAQDDMDEKTFNALMAKGYDQAAQSDSYPIDDVFKELD R >gi|311091283|gb|AEKJ01000024.1| GENE 32 38682 - 39293 779 203 aa, chain - ## HITS:1 COG:SP1625 KEGG:ns NR:ns ## COG: SP1625 COG4300 # Protein_GI_number: 15901461 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Streptococcus pneumoniae TIGR4 # 2 196 3 202 204 161 55.0 7e-40 METIVSALLVFVSTSIDYLVVLTILFASQGKKGLKSIYVGQYLGTGLLVLASLIAAYFLN FIPQDWIIGLLGLIPLGLGIRAIFVDEDIDEEDIEEKITGDGSKILAFTSLTVAMGGDNL GIYIPYFTGKSLIEISISLVIFALGILILCKLSQNLSSISAIGETVEKYEKVIVPVVFIG LGLYILIENGTINYFIGQVLKVV >gi|311091283|gb|AEKJ01000024.1| GENE 33 39740 - 39919 135 59 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21066 NR:ns ## KEGG: HMPREF0421_21066 # Name: not_defined # Def: addiction module toxin RelE # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 10 59 58 107 107 78 78.0 7e-14 MMFLKSLTADGQPWGELGFRRIRVKNYYVYFGVDGNKREVQILAVIYAIRDQATQLEQL >gi|311091283|gb|AEKJ01000024.1| GENE 34 39891 - 40115 297 74 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21067 NR:ns ## KEGG: HMPREF0421_21067 # Name: not_defined # Def: toxin-antitoxin system # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 74 34 107 109 129 89.0 3e-29 METIGIPRATAIDMFYRQIILNKGIPFSLTIQKSLPAQDDMDEKTFNALMAKGYDQAAQS DSYPIDDVFKELDR >gi|311091283|gb|AEKJ01000024.1| GENE 35 40075 - 40269 114 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSIAVALGIPIVSKICSACCLIFYCILTFTFALLVTAISINLNTHIINYCVAYCNTIARM GFFD >gi|311091283|gb|AEKJ01000024.1| GENE 36 40317 - 40751 463 144 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21046 NR:ns ## KEGG: HMPREF0421_21046 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 144 24 167 167 251 87.0 1e-65 MRNKTIFCKTIFQSCLVMLLLLGSLFSLAGCTDDEEKAKLASYHWETVAVSREEFRIPEN YMNKDELYLFVSRDILDSHQDLSKVTLGDKHIKLVNSSFNLSGPGLKALFLVGKFDLKDK PSSAVLKVPGFKKKGNVAIGYKKK >gi|311091283|gb|AEKJ01000024.1| GENE 37 40972 - 41151 63 59 aa, chain + ## HITS:1 COG:AF1793 KEGG:ns NR:ns ## COG: AF1793 COG1476 # Protein_GI_number: 11499382 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Archaeoglobus fulgidus # 12 59 18 65 70 58 60.0 3e-09 MDLQNEFIPTLELAEMVNVRRETIVHLENGRYNPSLKLVMDIAKIFKVKVEDLFEFTDK >gi|311091283|gb|AEKJ01000024.1| GENE 38 41346 - 41522 68 58 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21071 NR:ns ## KEGG: HMPREF0421_21071 # Name: not_defined # Def: phage integrase family site-specific recombinase # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 12 58 81 127 127 64 89.0 2e-09 MIKYESDKWKIFLKSERHDISEYYEKLVRKYIKKIKVYEDKFSLTFKSEISVDIERAS >gi|311091283|gb|AEKJ01000024.1| GENE 39 41721 - 42305 558 194 aa, chain - ## HITS:1 COG:no KEGG:Apre_1785 NR:ns ## KEGG: Apre_1785 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 2 177 1 176 176 300 97.0 3e-80 MVDELRKEIAIQQKKGLPFIMASVIIWLLIVLVSILDININMKNLLVFCCSCPLLPLAWL IGKLIKVDIFSKQNPLGQLGFIFTLNQMIYLLIVMWVFSAVPEKMIMVYAMVFGAHLFPY SWLYQSKGYTVAAISIPMISLILGCALNGTTVAVAACIIEIVFACVLHMELKKMGDNYNK SQFVKLSKDQVSMK >gi|311091283|gb|AEKJ01000024.1| GENE 40 42332 - 42493 98 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKRKQNDRPACIDRSSLPHCHSGFLFSPYGLEMIGATVIAFIELINYKIKAV >gi|311091283|gb|AEKJ01000024.1| GENE 41 42471 - 42905 610 144 aa, chain - ## HITS:1 COG:SP2068 KEGG:ns NR:ns ## COG: SP2068 COG0295 # Protein_GI_number: 15901887 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Streptococcus pneumoniae TIGR4 # 1 140 1 140 144 183 60.0 9e-47 MDIWDTMYEKAKPQFHPEEVSPFVYAHHVVCAIEAENGEIFTGFCIESCSGVLNLCAERM AALNMYVNSGQTKVKRLIAFRDKAPYGAGSGMPCGACREFFYQLNEENEKMEIMEDFEQR KTVTLKELMPNWWGKDRYAETKAK >gi|311091283|gb|AEKJ01000024.1| GENE 42 43103 - 43588 391 161 aa, chain - ## HITS:1 COG:L24277 KEGG:ns NR:ns ## COG: L24277 COG0494 # Protein_GI_number: 15672204 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Lactococcus lactis # 46 159 1 119 119 95 45.0 4e-20 MEHNCGFINDKKAFRYRAAAIIVEEGCVLFARNDKDDYYYSVGGAVHMGETSEEAVKREV FEETGLNYEVDHLAVIHEHFFIGSSGLKGVDFHELTFYYMMKPMGKRDFTSQSTTESGAK ETMHWLPIDELDKCKAYPTFMKEYLKSEHRGVEHIVTDERD >gi|311091283|gb|AEKJ01000024.1| GENE 43 43666 - 44004 342 112 aa, chain - ## HITS:1 COG:no KEGG:FMG_0970 NR:ns ## KEGG: FMG_0970 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 112 62 170 329 182 87.0 4e-45 MFQLTANEFENLRCKNFTSSWGGSRYLPNAFTEQGIYMIMTVLRGELAIRQSRALIRTFK QMKDFIIENQDFIGSKELVQIAIKTNKNTTDIAKINDKISTLATKEDLKKAI >gi|311091283|gb|AEKJ01000024.1| GENE 44 44391 - 44798 596 135 aa, chain - ## HITS:1 COG:no KEGG:SGO_1462 NR:ns ## KEGG: SGO_1462 # Name: not_defined # Def: NUDIX domain-containing protein # Organism: S.gordonii # Pathway: not_defined # 1 119 1 122 138 78 37.0 1e-13 MRASMFVIDKTGDYVVIIKRYKDGREYYVVPGGKVVVGESVQHAAIREISEELDLNINES DIIGSLNGDDNVFFLAKTGYKQGGLSIHGEEKSRSNLDNVYQPIWIRISEISRLEIFPKF DKNRFSKIVGDKCNK >gi|311091283|gb|AEKJ01000024.1| GENE 45 45806 - 45973 137 55 aa, chain + ## HITS:1 COG:no KEGG:CD1870 NR:ns ## KEGG: CD1870 # Name: not_defined # Def: putative conjugative transposon mobilization protein # Organism: C.difficile # Pathway: not_defined # 1 55 1 55 116 90 92.0 3e-17 MANRILNKRLEIKLTEEEKALFEEKRELAKCRNMSHFIRKCVLEKEIYQVDLEPF >gi|311091283|gb|AEKJ01000024.1| GENE 46 46380 - 47165 662 261 aa, chain + ## HITS:1 COG:no KEGG:SZO_12770 NR:ns ## KEGG: SZO_12770 # Name: not_defined # Def: relaxase/mobilisation protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 261 77 342 443 392 83.0 1e-108 MAHQIGMELCEKILKDEYEFALSTHIAKGHIHNHIIFNNVNMVTGKCYQSNKRSYHQIRY QSDKLCRENNLSVIDKFYESYKKKYKTNGRSWYENEHAKKGTSWKNRFQFDIDRLIKQSK DWDEFLKKMAELGYEIKYGKHIAFKPKDKSRFTRAKTIGEDYTEKRIKNVLQKKHLSKRI GNVIGMNTNMKVKESKGYEYWATKNNLNTMAESVIFLREQGIKSVNQLGEYIQKKAADER QNLQDKIKVIDKEMQELSATM >gi|311091283|gb|AEKJ01000024.1| GENE 47 47503 - 50034 1710 843 aa, chain - ## HITS:1 COG:SMa2245 KEGG:ns NR:ns ## COG: SMa2245 COG1204 # Protein_GI_number: 16263663 # Func_class: R General function prediction only # Function: Superfamily II helicase # Organism: Sinorhizobium meliloti # 1 836 1 837 845 686 39.0 0 MVDFKKKIALKSKSKITNPIDLYNTLDRKSIAGPLRPVQEYALDEWYNNRKDERDLIVKL HTGEGKTLIGLLMLQSALNLGEGPCVYVCPNIYLVKQVCDEAEKFGIPFCVIDRNNTIPN EFLSGEKILITHAHKIFNGKSIFGIGNNCTKAGTIVLDDSHACIDVLKNSFTVTISRENN ETIYNKILTLFSDDLIEQGEGSYLDIKAGEYDTFMMVPYWAWNSKRMELLSILSEYSSID EIQFVWPLMKDKIIEYSCFVSGNKIEISPYSVNVEQFGTFSRANRRILMSATTQEDIFFV KGLNFSSNAVTNPIVYPKLRWSGEKMILMPSLIDETCDRDLVATKFASMNAKKFGIVAIV PNTKRATYYNKLGSKFPNTNEELFSVIDDLRKSKFGETVVINNRYDGIDLPDESCRVLIM DSMPFLNNYSDRYEEKCCPNSEIINKKIAQKIEQGIGRAVRGEKDYCAILVIGSDIEKFM RGVLTRKYFSSQTQKQIEIGFEVAKMAKEDIREDDQPMKQIGSLINQILKRDEGWKEYYT SEMNEIVQESVENRIYKRYAEENELEKLFSQGEYELAVERTQKFIDNFISDDLEKGWYLE QMARYAYMYSTEKSEKFQRSAFRKNPQLLKPKDGIAYSKISFLNENRMINFKRNISKYNS FEEFNLYINEVIENLSFGIAAEKFESALKKLGEILGYVSQRPDKEIRKGPDNLWCVSYKK YVFFECKSEVDENRNAINKSEAGQFNNHCGWFKDVYGEFVDVLRIMIIPTKRLAHDADFN EKVFVMRKNGLKKLKDNLKKFVNEIKIYELDSLSDERIQNYFNTYKLNVEDFEKNYIEDI YHL >gi|311091283|gb|AEKJ01000024.1| GENE 48 50065 - 50880 616 271 aa, chain - ## HITS:1 COG:no KEGG:CHAB381_0331 NR:ns ## KEGG: CHAB381_0331 # Name: not_defined # Def: hypothetical protein # Organism: C.hominis_BAA-381 # Pathway: not_defined # 1 271 1 271 271 496 98.0 1e-139 MISYIERTYFNDLLNRGGYVLDFSTYRFDEFTLHSVGIALCETYNLSKGKSLNEFINKGD NDKVVKLLDDLLEYYEVRYSLEIESDDRAYNGSTYKSLYDKCKEIIEREKQHSKKFSKVS EELKKKFSSKYMNQQIDLMVAMCNENPTESIGKSKELLESCCKTIIESNGEIIKDSINMG QLVKQTLSSLNIPNKGVAMDLEEEKIVKQITGSLNGLSSGIIELRNHYGSGHGRSAKFNG LTKRHAELSVGASITLVRYLWDTFLLINENK >gi|311091283|gb|AEKJ01000024.1| GENE 49 50917 - 51129 214 70 aa, chain - ## HITS:1 COG:SPy0544 KEGG:ns NR:ns ## COG: SPy0544 COG3655 # Protein_GI_number: 15674643 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 4 69 3 68 69 63 51.0 8e-11 MRIFSYKRLFKKLIDLDMTNNELMEKAKVSKSTFYKMKNGQNVTTDVLLRICNALDCDIE EIVECIKFNS >gi|311091283|gb|AEKJ01000024.1| GENE 50 51270 - 51575 316 101 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0755 NR:ns ## KEGG: SEQ_0755 # Name: not_defined # Def: conjugative transposon conserved hypothetical protein # Organism: S.equi_equi # Pathway: not_defined # 16 101 134 219 219 117 82.0 1e-25 MMKKIRYIIIAPHTEKKSDIPKDFKQGDFVKLFGQIKTSVDDNGKEHTNIRVLSSKLLKA KEQMKGQEEKKVSVLGAIKKYQAEDTEKPKEKKETLKETGR >gi|311091283|gb|AEKJ01000024.1| GENE 51 51613 - 51831 276 72 aa, chain - ## HITS:1 COG:no KEGG:CD0424 NR:ns ## KEGG: CD0424 # Name: not_defined # Def: putative single-strand binding protein # Organism: C.difficile # Pathway: not_defined # 25 72 64 111 225 87 87.0 2e-16 MKELWISSMRLIWTMTPLIYCMRNLNYMIEELREQGHIKDLPYVQTEKDNLVNIVGNVVG KVDVFERENKNG >gi|311091283|gb|AEKJ01000024.1| GENE 52 51743 - 51931 195 62 aa, chain - ## HITS:1 COG:no KEGG:CD0424 NR:ns ## KEGG: CD0424 # Name: not_defined # Def: putative single-strand binding protein # Organism: C.difficile # Pathway: not_defined # 1 59 7 65 225 89 86.0 5e-17 MDYKTMINQIEDMVSDNHKDFVKTVISMEKGINDERALDKLYEAYMDNDTVNLLHEEFEL YD >gi|311091283|gb|AEKJ01000024.1| GENE 53 52759 - 53577 889 272 aa, chain - ## HITS:1 COG:FN0830 KEGG:ns NR:ns ## COG: FN0830 COG2865 # Protein_GI_number: 19704165 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Fusobacterium nucleatum # 1 270 239 514 522 374 71.0 1e-104 MFADTPNKFIPNAHVEIIREIDGTDKMESKKFDGPVWIQAKQVSKYFEDNIMASYTIREA DKIEHKIVYNYPLTAFEELATNAILHKEYDTPEYVGIYIYKDRISFVNHNRPLPPVTIEA LNRDRTFDRRQYLNKELKDMFFSLNLIESYGSGIRRAKDALLENGSPELKFYPDNEEDNY TNAVMGVNKEFLKEFNDSNDEKTTTKTTTKTTMKQEEIIKIIAENPHISAKEIAEKLNLT VDGVRYHLNKMRKAGLIRYEGSTKLGQWVIMK >gi|311091283|gb|AEKJ01000024.1| GENE 54 53614 - 54291 485 225 aa, chain - ## HITS:1 COG:FN0830 KEGG:ns NR:ns ## COG: FN0830 COG2865 # Protein_GI_number: 19704165 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Fusobacterium nucleatum # 1 225 1 225 522 335 77.0 3e-92 MQLLDIKRMAHNILEKQNIESSFIEYKKSANFKDKILKTACAFANNYMNNEIGLLFVGIE EVDDKETGEKAIPKRPIEGIKEAKLEGIENEIKSLLANIHPKINYHIITDQIDDEYYIVV AVESGSNGPFQTSERAEKDKDIRLKAGRYIRVGRDSRLPNPTEEFELLKKFANFSFNSNL NDTATIDDLSYEYMKEYLLQTGAKKDIREMSKLYMAKSMGLVSES >gi|311091283|gb|AEKJ01000024.1| GENE 55 54373 - 55167 667 264 aa, chain - ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 27 256 355 588 709 124 37.0 1e-28 MLLTEDMIVSMVNNILGKKDFDTEHIKMVFNSKNVTDHQAIIPTVSSLSEDLSSIPDSET KVYGLISNKLHASVGYPLVENTTKIVAEFDGFEFTSSGMVIKDEGFSKNLKEYKSKKSED AVLHDVSIGDVLSIENKEIKEKFTQPPKHFTEDTFLKSMEIAGNESLEKGVEVERKGLGT PATRAGIIENLIYKGFVERDKKNLIVTYKGLSFVTIVSDTFKSAETTAKWEMKLANIAKG KSSKEKFLKDIESEIQEAVLKYSK >gi|311091283|gb|AEKJ01000024.1| GENE 56 55201 - 55395 70 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEGLTFFCLKSNKLSCISRILIRFFIIAAIPMMNRIVLISIVLMFLLPLMEQKLLYLQSY LSRP >gi|311091283|gb|AEKJ01000024.1| GENE 57 55672 - 56196 482 174 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0745 NR:ns ## KEGG: SEQ_0745 # Name: not_defined # Def: membrane protein # Organism: S.equi_equi # Pathway: not_defined # 1 133 1 132 515 177 75.0 1e-43 MKNSWKKNKNFWTAALAVVVSISCLLDLWTVVYDHEQNLTEAPTSDKAVQTQVEVNVKYI FEDEKVYKKEKIKYEKGQLLDSGYMSMLPDNMKFIDEFLFYEVKGDGNDEIIRNVAKTEV KDKETQTKKSRKRMRACRRKFQRRKISQRRQSFLKMIFLKGKKMQRNIRKNLIS >gi|311091283|gb|AEKJ01000024.1| GENE 58 56171 - 56377 235 68 aa, chain - ## HITS:1 COG:no KEGG:SZO_12840 NR:ns ## KEGG: SZO_12840 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 68 12 79 79 62 79.0 6e-09 MKKLKDRKALIDKELEPLFIHEEELENEEIIAICRKNNITISDLMAKVNRQRVEMKKEKS NEKQLEKE >gi|311091283|gb|AEKJ01000024.1| GENE 59 56422 - 57114 560 230 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0743 NR:ns ## KEGG: SEQ_0743 # Name: not_defined # Def: membrane protein # Organism: S.equi_equi # Pathway: not_defined # 1 230 478 707 707 403 86.0 1e-111 MYSLEYREEVEIRYRTVTETYTNEDGNEYTESHEEPYEYKKLIVTLHKKEMDSIIRKIFA NYPDNLKHHETLFLAQVNMGEAFGNSDLISANGGVGGGIEYESSSEVQKKIVNVAYITPS LGAVWCSMWVSQVYQNAGLGYIGGNACDMYRNYTFTSDRSKLQVRMLVAVESSSSGSTAG LTYGYVGIYIGDDKVMNNIGRIRLTTLDNWIASFCKHHYVGFGFPPNVKK >gi|311091283|gb|AEKJ01000024.1| GENE 60 57223 - 57390 113 55 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0743 NR:ns ## KEGG: SEQ_0743 # Name: not_defined # Def: membrane protein # Organism: S.equi_equi # Pathway: not_defined # 1 55 386 440 707 94 89.0 1e-18 MNSTSSVLTTSYLSKPNVLNEINQSFSAMESELQNEVDHVKNNYPGYDEYILNNT >gi|311091283|gb|AEKJ01000024.1| GENE 61 58083 - 58286 129 67 aa, chain - ## HITS:1 COG:no KEGG:CD0418 NR:ns ## KEGG: CD0418 # Name: not_defined # Def: putative conjugal transfer protein # Organism: C.difficile # Pathway: not_defined # 1 67 731 797 797 124 94.0 2e-27 MLNQASGDREILARKLKISLPQLRYVTNSNECEGLLFFGNTIALFLDKFPKDTIPYQKMT TKPEEVR >gi|311091283|gb|AEKJ01000024.1| GENE 62 58508 - 59398 217 296 aa, chain - ## HITS:1 COG:MYPU_3830 KEGG:ns NR:ns ## COG: MYPU_3830 COG3451 # Protein_GI_number: 15828854 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Mycoplasma pulmonis # 56 284 452 689 853 64 28.0 2e-10 MHFAKTVQKLDNTISQISYISNKHNCKLKRLDHTQEQGLISVLPLVVNKIEIDRGLTSSS TAVFMPFTTEELFINSINNLYYGLNALSHNLIMADRKKLKNSNGLILGTPGSGKSFSAKI ETANAILVTDDDVIICDPDGEYGNLVRQFNGEVIKVSSKSKDYLNPLDININYGDGDVPL KDKANFIMSIMELVVGGSGLTAEEKSVIDRCLPKIYERYFENPEPCNMPILQDLYDMLKG QEEKVGKKLAMEMEIYISGSLNVFNHRSNVDLNKKLLCFDINELGSQLKKIGMLVI >gi|311091283|gb|AEKJ01000024.1| GENE 63 59471 - 59668 128 65 aa, chain - ## HITS:1 COG:no KEGG:CD1856 NR:ns ## KEGG: CD1856 # Name: not_defined # Def: putative conjugal transfer protein # Organism: C.difficile # Pathway: not_defined # 1 65 279 343 809 116 96.0 3e-25 MLAEFLDIDDNINISFHIKAIDQSEAIKMVKRKNIDIDKMKIEENKKAVRSGYDMDILPS DLITY >gi|311091283|gb|AEKJ01000024.1| GENE 64 59883 - 60050 127 55 aa, chain - ## HITS:1 COG:no KEGG:CD0418 NR:ns ## KEGG: CD0418 # Name: not_defined # Def: putative conjugal transfer protein # Organism: C.difficile # Pathway: not_defined # 1 51 140 190 797 85 94.0 9e-16 MLKRQIVKENNGLKKSKYVTFTVEVDNLEQATSKLERLEIDILSNLKSMGVVRKV >gi|311091283|gb|AEKJ01000024.1| GENE 65 60156 - 60494 255 112 aa, chain - ## HITS:1 COG:no KEGG:SZO_12860 NR:ns ## KEGG: SZO_12860 # Name: not_defined # Def: conjugal transfer protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 21 112 23 114 808 164 90.0 1e-39 MNVSRILGTYHFGLTFGGRYKQDLKQNKGKSKKDKGLLDLIFRKEPKRYTVEDTIPYLRL LKSGICQLDEKHFSKSIAFQDINYQLALDEDRDLIFNQFANFLHSFDQSISI >gi|311091283|gb|AEKJ01000024.1| GENE 66 60507 - 61388 436 293 aa, chain - ## HITS:1 COG:SPy0198 KEGG:ns NR:ns ## COG: SPy0198 COG2801 # Protein_GI_number: 15674400 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 26 291 2 266 268 248 51.0 9e-66 MCYGTQGEKAAIIKELREKGYQLKYLLKAIGVYKSTYYFEINKSDVVADRNEELLIVIRE IFEKNKHRYGVRRIYHELLNRGYHINHKRVQRLMHEAGLAGKRPKEKYHSYKGEVGKIAD NVINRDFSTTAPLQKWTTDVSQFNFSWGKCYISPVLDMNTNEIISYDLSKSPNLKQIERM LDKAFDKFPSVESLVFHSDQGWQYMHAYFRNTLKERGIIQSMSRKGNCYDNCIMETFFGR LKNEMYYGYEKDYSSFEEFSKAVEEYIDYYNNKRIQAKTKWMPPVKYRIASMC >gi|311091283|gb|AEKJ01000024.1| GENE 67 61319 - 61882 690 187 aa, chain - ## HITS:1 COG:no KEGG:EUBREC_2744 NR:ns ## KEGG: EUBREC_2744 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 1 187 15 201 201 166 52.0 6e-40 MKYDYVFKLNAVELYRSGQWIETPEGISQKNFRKRIVQWSRIADIYGLDSLRHSTTCKER SAECRYQLVARVLAGESQKSVAISAGIGSGLLSKWVQTYKIKGYEGLKLKKGRKSKKEAN VSKKSKPADLTPSEREELIRLRAETEYLKTENEAIKKLIALRHEKCAMELKAKKQQSSKN SEKKDTN >gi|311091283|gb|AEKJ01000024.1| GENE 68 61958 - 62281 312 107 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAKYSFEFKKKIVLDYLDGKGGAQYLYCKIQKSLWQRPMSFVLSSKSLILLKNLILSITA ITPAPITTAITKIFNTLTAWVKKSIIYSSSFSSFFSILLYDFTTKFL >gi|311091283|gb|AEKJ01000024.1| GENE 69 62329 - 62526 182 65 aa, chain - ## HITS:1 COG:no KEGG:HSM_1183 NR:ns ## KEGG: HSM_1183 # Name: not_defined # Def: hypothetical protein # Organism: H.somnus_2336 # Pathway: not_defined # 1 64 1 64 89 73 68.0 2e-12 MKQEMININANLLAEPTFSSFENEGEKVEVANFTLVKKYGKERSISIVQLMDKKRIKQRT LKKAI >gi|311091283|gb|AEKJ01000024.1| GENE 70 62716 - 63363 740 215 aa, chain - ## HITS:1 COG:RSc2614 KEGG:ns NR:ns ## COG: RSc2614 COG4271 # Protein_GI_number: 17547333 # Func_class: K Transcription # Function: Predicted nucleotide-binding protein containing TIR -like domain # Organism: Ralstonia solanacearum # 70 211 84 230 233 120 44.0 2e-27 MTTEKTVRSLSQYENDNMPQGLIMYVSPNDILTYDKYITDVTKELLDEGKKTQHTILDRH KDEIIGKDKNKVFIVHGRDNETKQEVARFIEKMGFEPIILHERSSSGMTIIEKIEKYTNV GFGIVLYTPCDKGYEKDSPKEIKSRARQNVVFEHGFLISKLGRNNVCALVKDDIEKPNDI SGVVYITFDSNGGWKIPLAKEMKSSGYEVDFNLFM >gi|311091283|gb|AEKJ01000024.1| GENE 71 63603 - 63923 159 106 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLYQLDYNQLFIANFFNISASSFSFSGYIERQKLTLLSSLKCSNNDFLKNFALSALNML LFFPSGFLFTFLQYVFLGSSASLILNEFTIDIFSISEICFGTLIGI >gi|311091283|gb|AEKJ01000024.1| GENE 72 64310 - 64528 160 72 aa, chain - ## HITS:1 COG:no KEGG:CD0412 NR:ns ## KEGG: CD0412 # Name: not_defined # Def: putative conjugal transfer protein # Organism: C.difficile # Pathway: not_defined # 1 72 522 593 594 114 79.0 1e-24 MSQDEITVIDGGKCIFQFRGFIPFLSDKFDITKHNNYKLLEDYDKKNIFNIEDYIKRKCK AKLNKNTSIIRL >gi|311091283|gb|AEKJ01000024.1| GENE 73 64820 - 65023 128 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFANSSSKHLTWTGNRPPYTSSALSHKRLKSCEYIMDTTKLKVSSISEIITKSAVFLSLS VSISSSS >gi|311091283|gb|AEKJ01000024.1| GENE 74 65130 - 65315 242 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQENKNEQNVGTKTIKKIGKVTYEVVVHFNETVTETMQDKLKRIMLREMEREKDKKDDKN D >gi|311091283|gb|AEKJ01000024.1| GENE 75 65416 - 65898 376 160 aa, chain - ## HITS:1 COG:no KEGG:FMG_0970 NR:ns ## KEGG: FMG_0970 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 160 170 329 329 281 94.0 5e-75 MDNFIDPDTYKHFLLMNGDKIEADVAYTKIYKSAKKSIYVIDNYIGLKTLELLRAAKDNV EVIIFSDNVRNKDMLTKNILNDFRGDYPNINLKLKIAGKRYHDRYITIDYGTENEAFYLC GASSKDAGNKISSITKIEESSKDMYHTMFWGMLNNKNLKI >gi|311091283|gb|AEKJ01000024.1| GENE 76 66848 - 67483 330 211 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0529 NR:ns ## KEGG: HMPREF0424_0529 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 1 207 1 209 209 265 66.0 1e-69 MGYKFSKSNINNVSGNVFNGTTNIISGNDNNFKERESEKAATYTPEPIWRSSITMAILTW LAFFISLIEIFPLYKICEPIINILMNKNNRIDTNNSIYLVIFALIMLVLMMILWLRNITK KETRHPLLFNYAISGLGRKITIEKIQIDKCPKCGGEMKYFNKAIKWRDITYSDGRTKREV IKRVPALQCKRNSDHWFEVDPAAERLNNKRG >gi|311091283|gb|AEKJ01000024.1| GENE 77 67556 - 67711 67 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309803804|ref|ZP_07697889.1| ## NR: gi|309803804|ref|ZP_07697889.1| recombinase [Lactobacillus iners LactinV 11V1-d] recombinase [Lactobacillus iners LactinV 11V1-d] # 1 51 53 103 103 64 100.0 3e-09 MLENKKYTGSVKLLDSVDKENYYLLKNNQEPIISEETFKKYKKKRKREVTL >gi|311091283|gb|AEKJ01000024.1| GENE 78 67889 - 68191 242 100 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0494 NR:ns ## KEGG: HMPREF0424_0494 # Name: not_defined # Def: resolvase, N-terminal domain protein # Organism: G.vaginalis # Pathway: not_defined # 1 99 83 181 321 100 48.0 2e-20 MLEDIKKEEVNIIVTKSVSRFGRDTVDALEALKVIKQASARIIFEQENLDSQEDDTDMII FIMESLAQSENEQRSENIKWGLKQRAAQGISKLYNRKCYC >gi|311091283|gb|AEKJ01000024.1| GENE 79 68584 - 68880 254 98 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAFKISFKILKAIDISTFIACYSIFLTPILRTQHAYHCPNLFFQLFCVLLNSSTFFSTLL RSSQLFYVLLNSSAFFSTLLRSSQLFCVLLNSSAFLLN >gi|311091283|gb|AEKJ01000024.1| GENE 80 68877 - 70319 1030 480 aa, chain - ## HITS:1 COG:MA2370 KEGG:ns NR:ns ## COG: MA2370 COG2865 # Protein_GI_number: 20091202 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 38 468 30 439 458 108 25.0 2e-23 MNTNVLNKLSFYCSENENQFFDRKSARIKPLDILKHLVAFSNAEGGQLVIGVEDDGTITG FNYEGAHSIDEYRNIFLTELKETPINPKFDILDVKNNKGTNDKILVISIDVSTDRVIKSY NGKVFLRQNDKSIELNFEQILQLQYDRGQRYFEDEVVQLSSIDDIDDGLIDDYKKILNID ELSSEEVLKARNFMINGKLTNAGILLFGKNPSKFLPQARLRVIKYSGMYQKVGTEINIIK EKTFDKAIPNIIREAREFINTQLRDFQYLDKDGKFKIMPEYPEFAWFEGIVNALTHRNYA IRGEHIKVLIFDDRLEILSPGLLPNIVTIENILNQRYSRNPRIARTLCEFGWVKEMNEGV KRIYSEMEKLFLKKPKYAEPNSSVLLVLENNILNRSIRTIDKIKGKISEEVFDKLNQDEK VILHFMYNSGEKITTKTATELIEKGSTFCRKLLKNLADKDLLEWHGTSKNDRTQYYTLKF >gi|311091283|gb|AEKJ01000024.1| GENE 81 70624 - 71976 1271 450 aa, chain - ## HITS:1 COG:SPy1346 KEGG:ns NR:ns ## COG: SPy1346 COG2265 # Protein_GI_number: 15675282 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 446 13 461 462 417 48.0 1e-116 MEKNQIVELEITDLSYEAMGVAHYEGLTIFVNNALPGEIVQAKILKIKKNFAFAKVEKFL QKSSDRMDVPLRQWVQTGLAALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPES TAYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVP AYDEIKHNGEVRYLEIRRSKANGQLMIVLVCLHKSFNNLDTVVQAIQSLDNVACVILNHN PHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTA DDVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEEL MPQWANEGLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLRVFQAAG YDFDCIDPVDMFPQTPHVETIVLLSKLGSK >gi|311091283|gb|AEKJ01000024.1| GENE 82 72332 - 73711 894 459 aa, chain + ## HITS:1 COG:BS_nhaC KEGG:ns NR:ns ## COG: BS_nhaC COG1757 # Protein_GI_number: 16078033 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Bacillus subtilis # 2 445 4 449 453 276 36.0 7e-74 MKHKVTFNEAICILLALLFILGTSVIKLGIAPEVPVLFTICLFIFWIKFFHGYSWQSIQD GIKEGIGVAIIPIFIFILIGALISLWIKSGIIPSIMYLGFHLLNGNYFIPSVFLVCTIIG VAIGSGFTTISTIGIALFGIGISMKANPGLVAGAIISGAVFGDKMSPLSDSTNLASAVAE SELFAHIKNMLWSTLPAFFCSLLLFTILGHGGAMNAARIETLSHILKSHFMISWWTIIPI IFMVLCAWKKIPAIPTLFLNITISIIIIFIQNPHQSIASLNQIIVNGYVAKTNDAAFNAL LSRGGIASMMETVALIISTLSLGGLLMKFNIVQSAMSPLVAKLKTPGSLIIATILSGIGI NLLVGEQYLSVILPGRAYKSAYTKLCLSSLALSRVLEDGGSVINYLIPWGVAGAFAASTL GVPVLTFLPFTFFSLFSPIFSIMSGISGIGLKRIHGIMQ >gi|311091283|gb|AEKJ01000024.1| GENE 83 73787 - 74500 588 237 aa, chain + ## HITS:1 COG:SPy0358 KEGG:ns NR:ns ## COG: SPy0358 COG0670 # Protein_GI_number: 15674509 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pyogenes M1 GAS # 17 234 11 229 229 117 37.0 2e-26 MNNFENIFQTRRSIVDNVALNRFLTKMYSIVALAILVSAATAYTILHFFANQFFNALSQN HALSFVLLILPFALIIGTSFSKNPILSFVLLMLTAMVYGLTFSIICLAFTQTSITAAFLS SSAVFITMAFIGTTTKKDLSNLGSYASAALIGLIVATIINMFLRNPMVTYIFSYIAVVIF TILTAWDAQKMKNIFIQNHDEIATTSLAIIGALTLYLDFINLFIQFLQIFGFSDNRR >gi|311091283|gb|AEKJ01000024.1| GENE 84 74543 - 75241 657 232 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 84 229 51 193 194 119 43.0 5e-27 MVYKKSRGVLIIFNKNNLNIKIKHFRLVYIAVSIVVVFAMTLASCVFARKNSKHSSTLRT SKVSLQKKIFRPYPDPTDLVKEGEWQKSSEKKAYPNLKKVKKLVIRVSVKGNRVYLLDNN KVIYTMLASCGKYKNGKSLTPLGKYQIIGGRGDKFFNSKLNEGALNWVSWTENCVYLFHS VPICKNQKINKSEAAKLGKQPASNGCIRLSLPDSKWLMDNVPTGTPVVIKTH >gi|311091283|gb|AEKJ01000024.1| GENE 85 75302 - 76210 1203 302 aa, chain - ## HITS:1 COG:lin1865 KEGG:ns NR:ns ## COG: lin1865 COG1597 # Protein_GI_number: 16800931 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Listeria innocua # 1 300 1 293 310 328 52.0 6e-90 MTKRARLIYNPVSGHEQNIRNVASILDILEQAGYEASAFRTTAEPFSAQKEANRVGKDGF ELIVGAGGDGTINEIVNGIAPLDHRPQMAVIPSGTTNDFARALKIPRDDLVAAARLVLQG KTRKMDIGKAGDKYFMNIAASGSLTELTYGVPSEWKSILGYTAYLLKGAEMFPKISNNKM RLTYDKGVYEGDLSMFFLGMTNSIGGWEQVMPDAQLSDGLFQLIVVKTSNPIDILRLMAM AINGNHVKDPNIIYTKTRSLKVELLDTSHSKKKIAVNLDGDIGGYLPMSFTNLQQHIEFF VG >gi|311091283|gb|AEKJ01000024.1| GENE 86 76230 - 77660 1781 476 aa, chain - ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 1 476 1 476 476 582 60.0 1e-166 MNFKSTIGLEVHFELKTKSKIFSPSPVTYGAEVNTATNVIDWGMPGVLPMVNKEVYRLGL MVALATNSQISPITHFDRKNYYYPDNPKAYQITQFFQPLARNGYIEVEVNGKKKRIGIHE MHIEEDAGKNTHGTNGYSYVDLNRQGVALLEVVSEPDMETPEEAYAYLEKLRQIVQFTGA SDVKMEEGSMRVDTNISIRPAGQKELGTKVEMKNLNSFQHVRQSLAYEEKRQAAVLLSGG QVQLSTRRFDESTGKTVLERVKEGDADYRYFPEPDIAPYHIKQSWIDEIKASLPESPFDR RKRYVNEYGIKEYDADVILQTKESSDFYDATVKAGADATLAANWLNTQVNGYLNEKQVDL DEVKLTPEHLAQIIKMIQDGTISSKIAKKVFQESIEHGTEPKKYVADKGMIQLSDLSVLA PLVAKIVDNNPQSVEDFKNGKDRAIGFLVGQIMKETHGKANPKVVNELINKELQSR >gi|311091283|gb|AEKJ01000024.1| GENE 87 77664 - 79103 1685 479 aa, chain - ## HITS:1 COG:SPy1771 KEGG:ns NR:ns ## COG: SPy1771 COG0154 # Protein_GI_number: 15675615 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Streptococcus pyogenes M1 GAS # 1 474 1 481 488 518 54.0 1e-146 MNYLNETIESLNKKLKNKEITAEQLTQDTLAKIKELEPKLNAMITVIDDAKPAENLDFSN ELAGIPIAVKDNIITNNVKTTAASHILYNYMPVYDATVVSKLKAAKMTIIGKTNMDEFAM GSSSENSYFGAPKNPWDLTKVTGGSSGGSAAAVAGGEVIAALGTDTGGSIRQPAAFNGIF GIKPTYGRVSRWGLIAFGSSLDQIGVMTKRVQDSAKILNVLSGADDHDATVSEREVPDFT KALNQDVKGLRVAVPEEYFGEGISEKVKALIKEQIKVLKDHGAIINKVSLPHTKYVIPDY YIIASSEASSNLQRFDGIRYGYRSKDAKNLLDVYVKSRSEGFGDEVKRRIMLGSFALSAG SYDRFFRQAAKVRTLICRDFEKIFEENDVIVGPTTPTPAFGLNSKTKDPLEMYANDILTI AANLAGVPAASVPAGLVDGMPVGLQIMAKRFDEESIFRVADFIERSNKFYEKKPTGLED >gi|311091283|gb|AEKJ01000024.1| GENE 88 79103 - 79405 342 100 aa, chain - ## HITS:1 COG:SP0438 KEGG:ns NR:ns ## COG: SP0438 COG0721 # Protein_GI_number: 15900356 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 100 1 100 100 78 44.0 4e-15 MKITKDEIIHVAKLSRLEFNAKEIDKFTEQMGEIINMANQLGEVNTDGVEETVQVVDRDT VFRADEPEHWQSKAELMKNVPDKVDGFIKVPVIIDKDDNA >gi|311091283|gb|AEKJ01000024.1| GENE 89 79416 - 80531 1283 371 aa, chain - ## HITS:1 COG:lin1869 KEGG:ns NR:ns ## COG: lin1869 COG4851 # Protein_GI_number: 16800935 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Listeria innocua # 56 368 57 370 371 192 33.0 1e-48 MGLLIFAFAINLTACGNLKNSNLTNNPANTNGKQKTYQTTVTDKNGYNVLLKDGQYLISP TNGITASNNDNNVDNRSLEVGLLNISHDLFSTDKYVFQEGQVLTPRQVNIWLSRYSKHNK QGLNYKKSKKYSPIILNQIFEQDFLVKSGSSYKLGGISLGLALNSVDYYTKVKDGPEYHV NIKKNQQLAYGKKVAYTLIKRLRKISALKHIPILIGLFQKTGRDSLIGGNYLAYSIVDTN SSKINEWKSVDYSSQVLPTIGDTKPINSTDAASFSDFKAAIQGYFPNISGVIAKVHYQNK HLKQMNISITTQFYGYAQIESFSRLTLSVAKKYLPNNVPIEIRIESVNNLQATITKNDAD DSYYVHVFSGE >gi|311091283|gb|AEKJ01000024.1| GENE 90 80552 - 82570 2024 672 aa, chain - ## HITS:1 COG:lin1870 KEGG:ns NR:ns ## COG: lin1870 COG0272 # Protein_GI_number: 16800936 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Listeria innocua # 20 667 14 663 671 618 48.0 1e-177 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVDYNVELKID GLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKIDIEVRGECYMDKAT FAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPPETITSQHQA ILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDLALQAKLGN TVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVSRAVLHNPD LLRQKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYEIPKICPSCNQNLVHLKDEV ALRCINPMCPAQVEEGITHFASRQAMNIVGLGPKIVRQLIALHLVNDIADLYFLSAAQLA KLDHFKDKSIQNLLNAIENSKQNSVELLLFGLGIDHVGAKAARLIAQKFHDLNTIRECSI ADLMQIDTIGQAIAESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKEKN VVLTGKLAHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTE DEVVAKLNSQKE >gi|311091283|gb|AEKJ01000024.1| GENE 91 82584 - 84812 2280 742 aa, chain - ## HITS:1 COG:SPy1267 KEGG:ns NR:ns ## COG: SPy1267 COG0210 # Protein_GI_number: 15675225 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 6 741 4 771 772 740 50.0 0 MNEESMLAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAI TFTNKAASEMRERVKQLLDSDADSIWMSTFHALCVRILRRYAEKIGYANNFSIADTAEQL TLIKRILKELNIDSKKFDPKSLVNAISNAKNDLLDPEEYAKQVSNEYEKKIAIVYREYQK NLQHDCIMDFDDLIMQTLVLFKSEPEVLHYYQNKFWYILVDEYQDTNQAQYELCHLLAQQ HKNICVVGDADQSIYGWRGANMQNILNFEQDYRNDNCNTIKLEQNYRSTGHILNAANAVI KNNKNRKPKKLWTNSGEGSKVNYYRASTGNDEAIFIIGKINKEIKENGYKYSDFAILYRT NAQSRNIEEAFVKSNIPYKIVGGHKFYDRKEIKDIMAYLRLVANPADYMSLHRIINAPRR GIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIMKDFGRKLEEMIIFAKNNTV TELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQFDDNYEANEDGAKAVDDFL AEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGMEEGIFPLARAQSDNSELEEE RRLAYVGITRAKKQLYLTNAIHRMLYGHYQNNNASRFISEINDIDLADISPIADNSFSSF ANKNTNSHSVQHEKPVIAKKAAGAIGADKKTWSVGDQVEHKAWGIGVVTKVNGSGEDMEL DIAFANLGVKRLLAAFAPIKKV >gi|311091283|gb|AEKJ01000024.1| GENE 92 84914 - 85525 365 203 aa, chain - ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 8 201 11 204 209 147 37.0 2e-35 MKKKYCKNQLDFMLIKVLLILLTFILCLLISRHIHHQVRPPINNDIDLIQKKAFIKKMVP LAQAEYQKYPIFPSVTIAQACLESDYGRSSLSKKYNNLFGMKGTDPNRTKLMETKEFVNN KWIVIKARFCVFNSMEECVKKHTLLLVNGTTWNPRQYQHVLNSTTYIQQAESLQKDGYAT DPSYSKSLLKIIDEFKLYQYDYR >gi|311091283|gb|AEKJ01000024.1| GENE 93 85528 - 86139 689 203 aa, chain - ## HITS:1 COG:no KEGG:LBA1940 NR:ns ## KEGG: LBA1940 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 202 1 201 201 176 50.0 5e-43 MANKKINTIAILSVFVAIVMLQTFIPCLGYIRFLPALPAITTLPLTVTVFGILMGPKMGG FLGFFWGALSLFRAYTQPADLVSIMLFQNAVIAIIPRFLAGVVPGLIGKLWQQRHSTRNY LISVAAGVASTLTNTLMVILFTSIFYNHSSKLMSCLGYADTSKSLIIVLLIALSFNSACE AIFTGILTPLIVVPLKKVLSKRL >gi|311091283|gb|AEKJ01000024.1| GENE 94 86081 - 86344 64 87 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTIATNTLNIAIVFIFLLAIMHLSPSKKKRKSLIAFLIICGREDSNFHDLKAITRSLVLR VCHSATPAYLNSIPNFIHFYKIYYLSI >gi|311091283|gb|AEKJ01000024.1| GENE 95 86355 - 87497 1768 380 aa, chain - ## HITS:1 COG:SPy2206_3 KEGG:ns NR:ns ## COG: SPy2206_3 COG0516 # Protein_GI_number: 15675939 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pyogenes M1 GAS # 99 379 5 283 286 395 76.0 1e-110 MSSWETKFAKKGLTFDDVLLIPAESHVLPNEVDLSVKLADNIKLNLPFISAGMDTVTESS MAIAMALQGGMGVIHKNMSIVAQAGEVATVKGVMLSGNFTRAAVDEENKLLVAAAVGVTS DTFQRAQALLEAGANAIVIDTAHGHSAGVLRKIKEIREHFPKATLIAGNVATAEGTKALF DSGVDIVKVGIGPGSICTTRIIAGVGVPQITAIYDAASVAREYGKTIIADGGIKYSGDIV KAIAAGGNAVMLGSMFAGTTETPGQIITDGDKKYKVYRGMGSIGAMAQSHGSSDRYFQGG VNEANKLVPEGIEARVEYKGDVSDTIFQLIGGLRSGMGYVGARNIDELINKAQFVQMTNS GLRESHPHDVQITKAAPNYK >gi|311091283|gb|AEKJ01000024.1| GENE 96 87645 - 90308 2648 887 aa, chain - ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 2 884 7 885 893 955 59.0 0 MQQEIYQQKSEDVIKQLKTSINTGLSLQQVSDRLKTDGLNELVGKQKRGLFLRFIDQFKD FMIIVLIVAAILSGVVANEWTDAAIIMFVVLLNAVLGIIQEARSEAAIEALKQMSTPNAH VRRDGQVVEIPSTQLVKGDIVLLEAGDVVPADLRLVLAKNLKIEEAALTGESVPVEKKSK VIEADDVALGDRINMAYSNTNVTYGRGEGVVVATAMDTEVGKIATMLNNADETDTPLKAN LNQLGKTLTLMILGICAFVCVVGIFTKQGTMPFDKLAIEMFLVAVSLAVAAIPEGLPAIV TIILALGTQNMAKHKAIVRKLPAVETLGATDIIASDKTGTLTQNKMTVEKVFYNDTYHCD KLEDKDNLAIKIMTLANDTKIIDNNSLLGDPTETALIQYALDSKWNVVDYLANNKRVQEV PFDSDRKLMSTVHQQADGKYFVAVKGAPDELLKRAVSLWHDDKIVDLDASAKAKILAANN DMAKNALRVLGLAYKVVDDKFTEVNSATVEQNLIFVGLVGMIDPERPEAKAAVAKAKSAG IRTIMITGDHQVTAAAIAKRLGIIGEDDTNCVITGAELDKISDTDFVKCVANYKVYARVS PEHKVRIVKAWQKNGKIVAMTGDGVNDAPSLKQADIGIGMGITGTEVSKGASDMVLADDN FATIVEAVRQGRKIFSNIQKAILYLMSCNVGEVLTVFMMTMLGWEILAPVQLLWINLVTD TLPAVALGVDPVERDIMKRKPRGKKSNFLSAVGISIVYQGILEGILVLGVYQIGLHIGPH IGNYKLLHGDALTMAFLTLGLIQLFHAFNSKFITKSIFCKDTLKNKWFNLAIIVSAIIMS AVEIPGLTSLFKVTELNITQWFVVLTAGILMIAIVEIVKLFQRNAEK >gi|311091283|gb|AEKJ01000024.1| GENE 97 90494 - 91330 1110 278 aa, chain - ## HITS:1 COG:lin1078 KEGG:ns NR:ns ## COG: lin1078 COG0171 # Protein_GI_number: 16800147 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Listeria innocua # 3 275 2 274 274 359 66.0 4e-99 MRDLQKKIIAYEQVAPKIDAKKEIRRSINFLKEYLLKNPGLKTYVLGISGGQDSTLTGKL AQMAISELRAETGDNEYQFIAVRLPYGVQKDASDAADAVAFQHADQDLIVNIKSAVDATV KSLEESGIEISDFNKGNIKARQRMIVQYAIAGANKGAVIGTDHAAENISGFFTKYGDGAS DILPIFRLNKRQGKALLQELNCPKHLYQKAPTADLEEKRPALPDEQALGVSYDKIDDYLE GKELAKVDAERIEYLWTRSEHKRHLPITIFDDFYKKNN >gi|311091283|gb|AEKJ01000024.1| GENE 98 91333 - 92811 1582 492 aa, chain - ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 4 492 7 494 495 701 69.0 0 MFNPELDRDDSLILHTDLYEINMMYTYFKKGISERKAVFEVYFRKEPFGNGYALFAGLSH MIDYIKKIHFAESDLQYLKENENYDDDFISYLRNLKINLTVRSAQEGELVFANEPIVQVE GPLAQCQLVETAILNIINFQTLIATKAARVKIAVGDQAIMEFGSRRAQETDAAIWGTRAA YIGGFDATSNVRAGKLFGIPISGTHAHSLVQAFGNEYDAFMAYAQTHKDCVFLVDTYDTL RSGVPTAIKVADEMGDKINFLGVRIDSGDMAYISKKIRKQLDDAGYPNAKIFASNDLDEK TILNLKMQGAKIDVWGVGTKLITAYDQPALGGVYKLVSIEHSDGKMYDTLKISSNAEKVS TPGKKQVWRISANSEKKNEGDWISCWNEDPRKLDALYMFHPQYTYINKVVTNYTAYPILK DIFVDGKQVYVEPSLQEIKKFAMTNLDGLWDEYKRSLNPQEYPVDLSQALYDHKMHLISK IRTQIIKRECED >gi|311091283|gb|AEKJ01000024.1| GENE 99 92862 - 93560 850 232 aa, chain - ## HITS:1 COG:FN1241 KEGG:ns NR:ns ## COG: FN1241 COG3774 # Protein_GI_number: 19704576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannosyltransferase OCH1 and related enzymes # Organism: Fusobacterium nucleatum # 1 178 1 176 243 130 41.0 3e-30 MIPKIIHYVWVGGNPKPKNIQKCMKTWSKHLKDYQIIEWNESNFDIHENKYVEQAYKAKK WAFVSDYIRAKAIYEMGGIYLDTDVLVLDDLHELLDNRAFVGFENIDNPFTAVFGAEPKH PLIKDMLDYYDDRNFEFDASDQLKGVNTVSVSDILKKVYGAKPNNLEQTIKDGVHVYPDG ILCNPSGQSKTIHVFTGTWMEGKKSLKRKIITMLKVNIKTKFQAKVYAKLFR >gi|311091283|gb|AEKJ01000024.1| GENE 100 93623 - 94711 961 362 aa, chain - ## HITS:1 COG:PH1844 KEGG:ns NR:ns ## COG: PH1844 COG0438 # Protein_GI_number: 14591592 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Pyrococcus horikoshii # 13 328 18 343 381 89 26.0 1e-17 MKVLHINAGLENGGGLYHIINLLSAAKMRNKDYELLTLAEGPVKAAAEEAKIKVTSLESN SRYDIKVFRRLIDYINQNNFDIVHTHGPRANLFLYLIHKKIKAKWVVTVHSDPLLDFANK GLIGKIFTKLNILALRHADQIFAITQRFADLLTDQVKIDPKKIIVIYNGIFFKNQIPVKL THDKFNIINVARCEKIKGQDLLLKALHAADDQRLMLHIAGDGSQLPHLKELAKELKLEDQ VIFHGFLSHTELTKLYQKMDLAVLSSYSESFPLVLLEAGDNELPLLSTTVGDIKKLIPDD EYGFIVNIGDEVALSDQLVNISKLSKKQLQMIAKKEKKYLANTFSIYNQLAEIDQGYQLL MK >gi|311091283|gb|AEKJ01000024.1| GENE 101 94747 - 95472 919 241 aa, chain - ## HITS:1 COG:BS_tagA KEGG:ns NR:ns ## COG: BS_tagA COG1922 # Protein_GI_number: 16080628 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Bacillus subtilis # 1 241 1 240 256 181 39.0 1e-45 MKKVNVLGVEFDNLTLLEFKKVFLQRIKDQKSTLIVTANPEIVMQANNDAAFMNLIKNDA DFVTADGIGIVLAGKIQHTPVKERVTGYDMFVWFLKIANEQKKRVYLIGAKAEIASLVDA KLRKEYPDLQIAKVEDGYFKEDLETVAKRIKAAKPDMVFAALGCPRQEQLLAILKKQGVP AIMMGVGGSFDVFSGKVRRAPKFFQKIHLEWFYRLATNPARIGRMQALPKFIVNVYRHRK N >gi|311091283|gb|AEKJ01000024.1| GENE 102 95476 - 96750 1284 424 aa, chain - ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 20 343 71 397 476 107 24.0 5e-23 MVFCSLSISYIGMRTISKIRAHSNKEELTEAFWGLWYFQALASSVMIILFIIFLLFIHIK YWNYFFIMLPFLIAAQLDISWFFQGLAEFGKVVLRNTCVKLLSIALILLLVKNPQDLDKY MLIMSVSTLLGSCVFWLNIKQYVAKPVKHFYKFQQTIKAIIILLIPQIATQIYTALDKPL LGMFQSSTQVSFYDNSQKISKIILGIITSITIVMMPKMAAEIKEKQRVMLRKSLEATVML GLIFAVVVMINTKEFVPFFFGDKYLAMTDLMFWFTLTVVIIPLGGVFANQFALANGKDKE YAIPVIIGAVIECIAASILDIAYGACGALIAILFTETIVCVLRIWIVRKDYEFKYVFKDI PKYFLAAIITFACGMLMPSLTHSAFLNMAYKSILVMLIYGLILALLHLELNQDIVTVIKK IIKR >gi|311091283|gb|AEKJ01000024.1| GENE 103 96918 - 98015 750 365 aa, chain - ## HITS:1 COG:MTH365 KEGG:ns NR:ns ## COG: MTH365 COG1887 # Protein_GI_number: 15678393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Methanothermobacter thermautotrophicus # 4 341 40 384 409 128 28.0 2e-29 MMFLLKFVGTDNNLYVILNEAGRSGSNGFIFYRYLRKYHPELDVVLVEPWPSAHLAFKTW LKIGRAKHIFTTHQPFKIKSKQVLSCFWHGIPLKKMALMSNNTSYKSDCRNIKSWQKADY ISSSSSLYETLMTSCISVKASKYVRTGFPRIDALYNPEVTKADVLKQYFNVTDVTAKIGV YMPTFRYELEDDSIMDKISRGNFFAFDYFDLSKLEQVLQKKNKYLIVKLHPYEMKKIDEK CKNYDHIYFLKDIDLFKFNYDMYDLLGNTDFLITDFSSVYFDYLHLDKPIYFVTNFLKEY EKTRGLLMGPYADIVPGAKINTFVELLDILENDTDTFAAARHQWLNMTYEIDFQQNCKRC FDALK >gi|311091283|gb|AEKJ01000024.1| GENE 104 98189 - 98578 500 129 aa, chain + ## HITS:1 COG:lin1076 KEGG:ns NR:ns ## COG: lin1076 COG0615 # Protein_GI_number: 16800145 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Listeria innocua # 1 127 1 126 127 185 74.0 2e-47 MKKVITYGTFDLLHYGHVRLLKRAKELGDYLIVALSTDEFNEFKKHKEAYNSYNERKYIL EAIKYVDEVIPENDWNQKITDVQKYNIDTFVMGDDWKGKFDFLKEYCNVVYLPRTPGIST TKIKHDLHN >gi|311091283|gb|AEKJ01000024.1| GENE 105 98807 - 100060 1261 417 aa, chain + ## HITS:1 COG:SP0145 KEGG:ns NR:ns ## COG: SP0145 COG0477 # Protein_GI_number: 15900083 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 379 1 378 408 99 26.0 1e-20 MDVFLKNKYYRRFSIASFLSTAGDILFYLAFLTYASKLKNYSLALSLIAISESIPRLLDI FGGYLADKTRNKLKNIFWMAIIRFFLYGLVGFLFITHISQWNLVLIIIVINFISDIVGTY SAGLCAPIIVELVDKEKFAEAEGFTNGLDEVFSTTAQFVGSGLLLFLSYSNLAFINAFTF LAAGLLYLSVGLRHTKENTPLASTEVNDQNFFATMKSSYIQIKKASGLLSTVLVIALLNG ALSAMGSLLPIIMAGHRSTMLISNYSFTLAVIGVVISVGSILGSAFGPQLFKKQSVFIMV MIAIVLSIATTIAAFLTNIYAILPFYLLLAAIASTASLKMQQWLVTTIDQTILASSMGLL NTIIMATAPAMTMFLTTISGLTNVKYSLLVLLVIECISFIVSIKLNAKDKMNNVEIS >gi|311091283|gb|AEKJ01000024.1| GENE 106 100160 - 100861 932 233 aa, chain - ## HITS:1 COG:SP1446 KEGG:ns NR:ns ## COG: SP1446 COG2188 # Protein_GI_number: 15901296 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 232 6 233 235 215 50.0 5e-56 MQEPVYIKIHNQLKKDIENKKYAVGARIPAERKLALEFNVSRMTLRQAIKTLEDEGILER RLGSGTYVASQKVKEKMMGIMSFTDITKLNHQTASTRLISYRVTQPSLTEREKLDLNSMD EVLRMERVRSADNIPICYEVATIPYTLVKNFSKAELSAGLYQTLIEKGGYQIGKVVENIG ATIATEMDARLLSVNKGEALVTRRQVTFLQNKMPFEYVRAFYVADRFEFTFEK >gi|311091283|gb|AEKJ01000024.1| GENE 107 101020 - 101208 201 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTAPKTVALPLGYNPITMEESGFEPLNSERTVLQTGAFSHFATPPKRYLIMIIKNILNCK HF >gi|311091283|gb|AEKJ01000024.1| GENE 108 101265 - 102173 1122 302 aa, chain - ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 2 299 3 300 302 241 42.0 1e-63 MRKVGIIGLGHVGATVAYTLFTHGVVDTMVLIDANEGKAVAEYNDLRDTLARNDYHVNVY MQDWSQLADADIIITSFGKISAVIENGDRFGEFGINSKNAKEIGEKIKATGFKGIIINIS NPCDAITTLLQETIGLPHNKIFGTGTFLDTARMQRIVAEELGQDPRNVQGFVLGEHGSSQ FSAWSTVSVNGKSVLEIFDDQKLAQMSAQSNKNSFIVARGKGYTSYAIATCAVKLVLAIF SDAHLFAPVSVYLEEFGTYIGYPAIVGKNGIERVIKLELPDKEYAQLAKSADIIKEHIDQ IK >gi|311091283|gb|AEKJ01000024.1| GENE 109 102416 - 103579 1374 387 aa, chain - ## HITS:1 COG:lin1454 KEGG:ns NR:ns ## COG: lin1454 COG3425 # Protein_GI_number: 16800522 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Listeria innocua # 1 385 1 388 388 328 45.0 1e-89 MKIGIDKIGFYTPNKYVDMVDLAMARNVDPNKYLKGIGQEKMSVADISQDAVSMAINATK QYLPKIDIDKVGLLIVGTESSVDESKSASLFVKSALKLKASVRTFEIKEACFGLTAAIFT AYDYISTHADKTAIVIGSDIARYGLNTAGEVTQGAGSISLLIKKDPAMLSINPQTSAYSK DINDFWRPTGSATALVDGKYSTQVYLDFFEYTFKNYQKQNNVNISNFKALLYHLPFTKMG LKANNLAIANLAERDAKKLTNEFKNSIELSKQVGNIYTGSLYLGLLSLLVHAELKLNDLI GLFSYGSGAMAEFFTFNIEAGYRNEIIDPYLILNRRKRLTVAEYEKIFTESLQAPIDGQS LVSDEQAGMWYFAGTKNHIRQYCEKNR >gi|311091283|gb|AEKJ01000024.1| GENE 110 103579 - 104799 1333 406 aa, chain - ## HITS:1 COG:SP1726 KEGG:ns NR:ns ## COG: SP1726 COG1257 # Protein_GI_number: 15901559 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Streptococcus pneumoniae TIGR4 # 38 402 46 423 424 253 42.0 6e-67 MCDKMKFYELSAMQRRQYYLKKGINFVDIDATELDRLDQLSENVVSKITLPLGLVQELIV NEQTYCVPMCTEEPSVVAAANHGAKFFNLAGGTKCICQRQGIYGQIICEINSQFNLVMLQ NKLPNIIEAVNQKFDSLIKHGGGLRKIETFVKEDMLYLRTLVDPADAMGANKTNLILEDI SQRLQKMTGVSELICAILSNYPSQFVQAKVEIPLQLVGTHLATKIAKLSRIGQVDPYRAV TNNKGIMNGVDAVLLASGNDYRAVEAACGVQASIDGHYTSLSKWQIEENKLIGCLTLPLA IGVVGGSISARKDVQQSFSLLGKVNAQQLANIIASIGLANNFAALYAITSRGINAGHMKL QARNIVAQLEADHNQKKQVLNHMIANQKFTLTDAKQILELIRKQDN >gi|311091283|gb|AEKJ01000024.1| GENE 111 104784 - 105950 1431 388 aa, chain - ## HITS:1 COG:lin1453 KEGG:ns NR:ns ## COG: lin1453 COG0183 # Protein_GI_number: 16800521 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Listeria innocua # 1 372 1 375 389 325 44.0 1e-88 MKEIYIIDAKRTPFGKFRGFFSDQNPIDMASQLLSKMLSKNKLPKKQIEAVYIGNVCSTG LGQNPARQVALHCGLSQETISTTINDVCGSSLKAMRLAQAQMQIGDFDMVAVGGVENMTQ APFFVESQFKDQSQDHLQWTLMHDCLNDAFSHQAMGITAEMVAQAHKISRDAMDQYAYES HQKAIKAIKSDWFAQEIIPFKKENEILVNDENVRFDTSLEKLAQLRSVFMENGTVTAGNS SPLSDGASFLILATGDKVKELKLKPIAKLGQFIEIGCDPNYMGYGPYYAIRKLLNKTNTT IDDYDVIEINEAFASQIVAVARDLKIPNNKLNIAGGAISLGHPLGATGTRLVATAINNLH QVSGHNALVSLCIGGGQAIACNIECVTK >gi|311091283|gb|AEKJ01000024.1| GENE 112 106188 - 106748 480 186 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00491 NR:ns ## KEGG: LCRIS_00491 # Name: not_defined # Def: aggregation promoting factor # Organism: L.crispatus # Pathway: not_defined # 1 186 1 223 223 136 40.0 5e-31 MLSKKHFLKTFMISCLILISIFTFNSFNKDNSAQAATKQIIRINYVPNYGIAVWDNYDNG HVTGQYLANNSRWVVIKTVKDAEGNTWYDLGNNQWIMAKYTVDESSVSQAANDAETEAKN WIAWRESRGSYTARNGQCIGKYQLLAAYLHGDFSPRNQELVANNYVYGRYGSWVNAKQFW ISHGWY >gi|311091283|gb|AEKJ01000024.1| GENE 113 106681 - 106836 72 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFMVDMVHGLTPNNFGLAMAGIKKIYDKKHLLILVRKCYFFGLIIKFYFLL >gi|311091283|gb|AEKJ01000024.1| GENE 114 106821 - 107105 246 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312873146|ref|ZP_07733205.1| ## NR: gi|312873146|ref|ZP_07733205.1| hypothetical protein HMPREF9218_0276 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0276 [Lactobacillus iners LEAF 2062A-h1] # 1 94 1 94 94 119 100.0 6e-26 MNGNGIVIILLFLAAIIVLLTEILNILIKQFPDNSVCKKIWCTSSYGEILFAIIAMIYFF VAYDTNIKFSIIFFVLSLLLLKGLHGLKQYYSKK >gi|311091283|gb|AEKJ01000024.1| GENE 115 107385 - 108758 1643 457 aa, chain - ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 7 451 3 448 449 322 42.0 1e-87 MKPYNSRKLSLKEYLVVSSLLFGLFFGAGNLIFPLHLGQLAGGKWIVATIGFLITGVLLP LLSVLAISVTKSEGVFDVGKPLGVGFALVFMVLIHATIGPLFGTPRTATVSFTVGVEPFV GSNNHTLALFIFSAVFFLLAFGFSYHENHILDNVGKVLNPLFLSLLFIMFLVAFLRPLGN PMTAAVTKDYVNASLINGFLQGYNTMDALAGLAFGVTVVTAVRQMGQRKESDVSKVVAKA GFVGMAAVAFIYLLLIVAGAMSLGHFKLSGDGGVAFTQIVNYYGGAFGQAVLAVLITVTC LTTAVGLVAAFAQDFHKHFPAVSYHTWLALTTFASFVVANFGLEQIIAWSTPMLMFLYPL SMVLILLSVCSPLFKRNSYVYFFVVLFTVVPALGDMVVAFPAVVSHSAFGLAVAKYREML PLAEFGLSWVVPALVGLVIGLAMYVYKDKKMSTQTVE >gi|311091283|gb|AEKJ01000024.1| GENE 116 109149 - 110303 1472 384 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 383 1 378 378 263 37.0 4e-70 MDEKGKLQVLCDLIKINSANGNEIEVAEYLSKLLSQHGLTAKIDAFGNKRANLLLEVGQG EKILGLTGHMDTVSLGDLTKWNTNPLEPTIIGNKLYGRGASDMKSGLAAQAIALIELYNS GELPQGRIRWIVTAGEENGTPGANRFEEQGIADDLAALIVGESTDGDIIFAHSGSLSYRI SSVGLSVHSSMPEKGKNAFDALVEFYRREKNLFDDAPFDEYLGSVKHSITVMHGGDQVNT IPDHAELLGNVRPTTAFGNDNVIKKLKQLVDKVNIDLDAKLQFELIYSYLPIETDPQSNF IKDAIEISQQSYQQFYPQHRKVNKDVFNGATDASVFIKKHHNLPVFIYGPDTWQVAHKIN EYTTIPSFYATIDAYKKIIKHFFA >gi|311091283|gb|AEKJ01000024.1| GENE 117 110413 - 111252 849 279 aa, chain - ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 20 279 25 285 286 257 53.0 2e-68 MKNQRNIIVTVVAVLLIIVGFFTLNRKGNSSEKNVTIGVVSQSKQDEAIWKIIRKDIKDK YGINVKIKNFTDYTQPNKALQNGDIDLNAFQHQAFLDAWNKANKGTIVSIGKTFIAPIRL YSNKYKSIKKLPKGATISLPNDATNESRALFVLKNAGLITFKKNCSKLATIKDIATNKKQ FKLKEIGAEQTARTLSDVDAAFVNNNYAIASGLKTNSAIYTEPVNKDSKQWINIICSTRK NKNNPLFKKIIKVYQTNKVKQLYKKYYGNTQIPAWDIKL >gi|311091283|gb|AEKJ01000024.1| GENE 118 111646 - 112815 1080 389 aa, chain - ## HITS:1 COG:no KEGG:FMG_0026 NR:ns ## KEGG: FMG_0026 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 313 392 699 773 212 42.0 2e-53 MKIVPVLGQKGKIDRYDIIKILQHEDHYHIYDSQGNEGITYTNPRALYPNAKFGQYVGTH SQHNTNVEIDWPEGIDKIVDHGDHWHLYKNGQEITVVHENPKSHYPNAEYIDERPKDYSN ITVENNEIFTYDEVKPEVKDGLREFLKKKDMRGIVDMEGFGDLTNETRPVYGSETDENGQ PIKKDIFYFCHNGDHYHALTIKQIIQAAKAGEYGSFTARDIVAAMKWSIENKEKLVTFTV SKNIDAVKNYLKQYYHIDDENDISSFGNQIGIYCIKADGNPVYFNVDDDFTVENGQIKSI KPLPAREEKTDQKSEADPQKEIPVENVNPTALTKVTLDSVKAFLIEKYPNSEVSAISGVL YVSKGEDEAPIKFKLTDFAIKDNKIVEKK >gi|311091283|gb|AEKJ01000024.1| GENE 119 113064 - 114011 1127 315 aa, chain - ## HITS:1 COG:no KEGG:Apre_0464 NR:ns ## KEGG: Apre_0464 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 4 301 2 340 763 259 44.0 7e-68 MNKKNKKSLAKLGVILISATILSACGNNQGANKATKNINHSFVTKKTTYQKDKTTKVLVD SDSFKKSDIVKIIKHGDHWHVFTADGKEHITYTDPNKMSDSTSLELVNVVTLAQLKNKKV VAIKIHGNHWHVFTADGNEYLTYQNPSSMFPHIKVTKYTGHHGSRGTASITKALAKDRVV KILQHGDHFHIYTASGKEFISYSDPRGMYPHAVFGQYVGTHGQHATQKVTSKQQLHLVSV LGKKVADKNRIVKILQHGDHYHIYDAEGNESITYSDPRALYPNAVFGQYVGTHADHQQAQ NIEQLQFVNVLGQKK >gi|311091283|gb|AEKJ01000024.1| GENE 120 114021 - 114815 732 264 aa, chain - ## HITS:1 COG:CAC2878 KEGG:ns NR:ns ## COG: CAC2878 COG1108 # Protein_GI_number: 15896132 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Clostridium acetobutylicum # 1 255 1 255 268 147 38.0 2e-35 MLEIFDYEFMRRAFIVGMFLAIILPTMGLPILLKRLSMIGDTLAHSSLAGVAIGLCFGFD PLLASIAACIVAGLGIELIRNKLKAYQEISTVIILAASIGLAGVFMSFINNANSISAYLF GSIVTISDSEFYLVIAVSLFVIVCSYLLYNTLYLCVFDPKAAPILGINVKFINFMVTFLS AVAISISAKTIGSLIVSSLLVIPVVSAMQIARTYKKTLLLSILLSVAFVYTGLFISYFFN LKPGSVIVLISVIWLILTMIIKKN >gi|311091283|gb|AEKJ01000024.1| GENE 121 114815 - 115486 272 223 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 194 1 199 305 109 33 8e-23 MNKVLDIENLTFAYEEKKILENFSCSIEQGNFVAIVGENGAGKSTLLNLILHNLKPLSGK IKIFGDDIDQKNHYQDIAYVSQSSVQNYRNFPTTVIEVIYNHLKFLKVKEPPEKYLDLVG LTEHQNKVLSELSGGQLQRVALAAAMIKNASLILLDEPTTGIDKKFSREFFGFLQEIASS GKTIVIVTHALDDAIDFIDYAIEIRNASGHILSRSDLQQLVVK >gi|311091283|gb|AEKJ01000024.1| GENE 122 115479 - 116390 893 303 aa, chain - ## HITS:1 COG:lin0191 KEGG:ns NR:ns ## COG: lin0191 COG0803 # Protein_GI_number: 16799268 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 1 300 1 310 312 189 38.0 5e-48 MKKHLFLFFTFLAIFCGCLTGCSKQQSSNNKKVIYTTFFPVTDLTKRIVGNKMEVKTIIK GNEEPHSFELKTNDMKDIAKADLIIYNGAGMENFIPALKDTVKKKNKFLDLSQGLKLLEA GKGIVKAHDRVNPHTWLSVKNAYEQLDTIYRKIASMDPKNEAYYKKNLKKAQSEFKYLDN QFEKTVAKFKGKDKYFVTSHAAFNYLARDYGFKQVAVTGISPDEEPSAKQLKKIADFVKK HHIKTIFFEGKATPKVAKTLAKNTHTKTDTIYTMENLTDDEAAMGYLKLMELNMKALMRS FNE >gi|311091283|gb|AEKJ01000024.1| GENE 123 116554 - 117045 485 163 aa, chain - ## HITS:1 COG:no KEGG:LPST_C0132 NR:ns ## KEGG: LPST_C0132 # Name: not_defined # Def: integral membrane protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 3 155 12 164 170 95 44.0 9e-19 MVVLAMLIALYIIFSRLLSLNIGGSHKISFTFICIALMGCLYSPYVTAISCAGADFIGCM LFPKLTYFPGFTLTAFLVGLVFGIVFSNKVNFVRILIATGLTCLIQFFVNSFWLKIICHV PYSVMLISRIPQECIMAVVMVILLSALFKLDIIQRKIKMWHEQ >gi|311091283|gb|AEKJ01000024.1| GENE 124 117185 - 117643 624 152 aa, chain - ## HITS:1 COG:SPy0504 KEGG:ns NR:ns ## COG: SPy0504 COG0691 # Protein_GI_number: 15674609 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 1 150 1 150 155 167 62.0 1e-41 MKKKENDALATNKKASYDYFIKETFEAGIALTGTEIKSVRARRINLKDGYVQTYRGSAFL ENVHISEYKQGNIYNHDPLRSRRLLLHKKEINHLQIIQAQQGMTIIPLKVYLKHGYAKVL IGVGQGKKQYDKRETIKRRDQDRELKSKYKIR >gi|311091283|gb|AEKJ01000024.1| GENE 125 117646 - 119922 1368 758 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 10 722 6 703 730 531 40 1e-150 MPQDERVLASIYEVFRHNSQKSYTIDKLDRELHNKLHYKFTELVRGVTFLEHEKKIITDG LGKYQLNRLDTIVEGTFRANDKGFGFIRYDEVADDIFVDKTNTSFAIDGDTVKAKIIADA NPWNGKGPEGQVVEIIERGFENLVGEFIPFSDQQVATTNYLGYVISENKKLKKYKIYILK DGLTPQLGDIVQVSLKTYPSEESPEDMTAVVIKVIGNKNDPGVDIMAIVADHDVKTEWSD EALEQANQIPDHVTAADKSGREDITQQAAVTIDGDDSKDFDDAVVLWKLDNGNYHLGVHI ADVAHYVTEGSPLDIEAFTRGNSTYLVDRVIPMLPFRLSNGICSLNEGVERLVLSCDMEI TPTGERVNYSIHPSVMKSHGRLTYSKVNRALAGDHLDELEEKYRTLRPMLVEMAKLHDIL YQKRHKRGAIDFEEPEAKIIVDKMGKPIDIVLHERGTAEKMVESFMLLANETVAEEYFRR HVPFLYRVHETPDEEKMKTFFEFVSAFGLNVKADPHDVKPSDLQQIVTKTAGTTEEAVVQ MMMLRSLRQAHYSAEPLGHFGLAAQYYTHFTSPIRRYSDLIVHRMIHEYGVGKPATELQK HFQGKLDEIAEQTSVQERRSIDTERSVNDLKMTEYMANQVGEHFDAIISSVTSFGMFIQL PNTVEGLIHISNLTDDFYRFDEKSLTLTGRGKHHQFKVGMPIKVKLINADVAQHQIDFEI YDPNTPKIKNNDHNQTKTPYRQRTSQNNRPYRKRNRQR >gi|311091283|gb|AEKJ01000024.1| GENE 126 119993 - 120211 207 72 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_02310 NR:ns ## KEGG: LAC30SC_02310 # Name: secG # Def: preprotein translocase subunit SecG # Organism: L.acidophilus_30SC # Pathway: Protein export [PATH:lai03060]; Bacterial secretion system [PATH:lai03070] # 1 72 6 77 77 84 83.0 1e-15 MTLIIIVSFLIIIATLMQPQKQQDALNALSGGAVFSGQTKKRGFEALMEKITGVLLVIFF VLAIILVKLSSK >gi|311091283|gb|AEKJ01000024.1| GENE 127 120345 - 121643 2068 432 aa, chain - ## HITS:1 COG:BS_eno KEGG:ns NR:ns ## COG: BS_eno COG0148 # Protein_GI_number: 16080443 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Bacillus subtilis # 1 430 1 430 430 583 69.0 1e-166 MSVITDIHAREVLDSRGNPTIEAEVYTEVGGFGRAIVPSGASTGEHEAVELRDGDKSRFN GTGVLTAVENVNGEIAKAIIGLDVTDQRLIDQTMIDLDGTPNKGRLGANAILAVSLASAR AAADELGLPLYEYLGGPNAHVLPTPMMNVINGGKHADNNVDIQEFMIMPVGAKSLHEAVR MGAETFHTLKKILKERGEFTGVGDEGGFAPNLKNNEEPFEILVEAIQRAGYKPGEDIAIA FDAAASEFYNKETKKYVTVADGREYTAEEWTSLIEDLVDKYPVISLEDPLDENDWEGWKT FTDRLSGKVQIVGDDLFVTNTNYLKKGIQKGVANSILIKVNQIGTLTETFEAIEMAKEAG YTAIVSHRSGETEDTTIADLVVATNAGQIKTGSMSRTDRIAKYNQLMRIEEALGSTAEYK GIHSFYNLHKQF >gi|311091283|gb|AEKJ01000024.1| GENE 128 121694 - 122449 917 251 aa, chain - ## HITS:1 COG:SP1574 KEGG:ns NR:ns ## COG: SP1574 COG0149 # Protein_GI_number: 15901416 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 2 249 3 250 252 313 62.0 1e-85 MRTPIIAGNWKLHMNPEQTTEFVNAVKNHLPESSKVEAVIAAPALDVDALRKAAAGSNLH TSAENCYFEAEGAFTGENSPLVLKEMGINYCIIGHSERRGYFHETDEDINKKAKALLEHG VTPIICCGESLETREANKQEEWVVSQIKAALEGLTAEQVSSLVIAYEPIWAIGTGKTASS DQAEEMCKTIRETVKDLYDEATSDNIRIQYGGSVKPANVKELMAKPNIDGGLVGGASLDP ESFLALVNYQD >gi|311091283|gb|AEKJ01000024.1| GENE 129 122467 - 123681 1682 404 aa, chain - ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 404 1 396 396 502 67.0 1e-142 MAKLIVSDLKDLEGKKVLVRVDFNVPIKNGVISDDNRIVAALPTIKYIVEHGGKAILLSH LGRVKSDADKKELTLKPVAERLSELLEKPVTFVPENEGKEVEDAVAAMKNGEVIVLENTR FQDIDNDFGKRESKNDPTLGEYWASLGDVYVNDAFGTAHRSHASNTGIATAMKAAGKLAA AGYLMEKEIKFLGNAVSNPVHPFVTILGGAKVSDKIGVITNLIPKSDHILIGGGMAYTFL AAQGHKIGKSLFEEDKVELAKELLAKAGDKIVLPVDHVAATEFSNDATHEVVDIDIPDNE MGLDIGPKTVEKFKEILKDAKTVVWNGPMGCFEMPNYAEGTLEVGRALANLTDAITIIGG GDSTAAAKQLGIAPKITHISTGGGASLNYLEGKELPGIACISDK >gi|311091283|gb|AEKJ01000024.1| GENE 130 123790 - 124806 1191 338 aa, chain - ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 338 3 333 333 414 64.0 1e-115 MTVKIGINGFGRIGRLAFRRIMELGEKSKDIEVVAINDLTTPALLAHLLKYDSTHGTFNH EVSATEDSIVVDGKKYRVYAEPQAQNIPWVKNDGVDFVLECTGFYTSKAKSEAHLKAGAK RVLISAPAGSDLKTVVYGVNEGTLTADDKIVSAGSCTTNSLAPMVNALNKEFGIEVGTMT TIHAFTSTQMILDGPVRGGNFRAARTASANIIPHSTGAAKAIGLVIPDLNGKLNGHAQRV PVVDGSVTELVSILSKEVTADEINEAMKKYETPSFAYNDDEIVSSDVLGMTAGSIFDPTQ TMVTTAGDKQLVKTVAWYDNEYSFTCQMVRTLLKFATL >gi|311091283|gb|AEKJ01000024.1| GENE 131 124863 - 125894 917 343 aa, chain - ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 3 341 2 341 348 251 40.0 2e-66 MDSDLTLLQSLVPDVFKIIRQRFLVLEQISLLAPVGRRVVAKKLGLSERNIRTETDYLKQ LHLIEINSSGMVLTEKGEITLKELAPLIDRIFNASKTELQLASKLGIDRVIIVPGNADLQ DRVWALMGEQLSAALDLLLPLGKDIITVSGGKTVANVTKHLSKRLSRYRDILFVPGRGAL GDDVELQSNTIAQAVASKVGGRFSGLYLPENLPSEAINALMQDPMISNTFTSIYNSDAVI HGIGLADNMARKRGFDAFTRSKLMDKGAVAECFGYFFDHNGHLVDRVPRVGFQLEVLDKI PHVFALAAGELKAPAIIAYMHHAPKQTWLITDEGASNKVLREN >gi|311091283|gb|AEKJ01000024.1| GENE 132 126408 - 126992 707 194 aa, chain + ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 2 193 3 194 198 267 70.0 1e-71 MLVPTVIEQTARGERAYDIYSRLLKDRVIMLSGEINDTMANSIIAQLLFLDAQDNTKDIS LYINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTAGTKGKRFALPNSTVL IHQPLGGAQGQQTDIQIAANEILKSREKINSILHETTGQPLEKIQADTERDKYLTAQEAK DYGLIDEILVNKNN >gi|311091283|gb|AEKJ01000024.1| GENE 133 127101 - 128357 1179 418 aa, chain - ## HITS:1 COG:TM0930 KEGG:ns NR:ns ## COG: TM0930 COG0714 # Protein_GI_number: 15643692 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Thermotoga maritima # 35 325 22 256 351 73 25.0 6e-13 MLNKKFYPYIAQGANAKQMFNIMQACIRAGVPFGLVGNPGVGKTATIEAMAKTLGREVIN LSLSTMLPEDIAGLPFPTKINIGSDKKEQMVDAACYAMPVWQQRLLHNSNAILFLDEFST AIPTTQHAFLQLVQNRRLPGSDLPFSKNVAIIIAMNPADQAGGSSLDLPIANRFAWFTFN PDFNDWATGFKQRWQSEELMSVPSFCTDEKILMARNKKIRSTIIDYLDSEKGAHQVTIVP SGMENPISSVVRRDDPAEMEVFRLAFPSARSWDNLAEIMTYIDEKDFGTIQVVINGTIGS NQGIAFYKYYVDNLKRLNIDAILKDPESVDWKHISIDESAGIFRALIEEAANGRLDQVLE VFISIKIAGAENLLSGNRLQDIYKAEYLNKLPLATRKKVKQRYLEYFGDFLTKIANNN >gi|311091283|gb|AEKJ01000024.1| GENE 134 128373 - 129869 1389 498 aa, chain - ## HITS:1 COG:no KEGG:Mahau_2494 NR:ns ## KEGG: Mahau_2494 # Name: not_defined # Def: von Willebrand factor type A # Organism: M.australiensis # Pathway: not_defined # 83 446 7 374 407 99 27.0 3e-19 MNDEFHNVLSADIQLNKEDYLKYDLEKINDRALAVRDILKSGGISKNNQKMQQNLILAYC ILAKLGITSYSIRKLSAEEMSVFQMATYKAVTAASALTGYISLLHPMVSVNYATLATDAN LRLGIGWWFFDPILDNVERGTLLLHEVMHTVLGHYELKNLDMQLVNTAGDAIINQEIEFG DHEVMRLPQNEDKSDFIVFPRTIITQKYPKGMPNNQSFETYYHALEEERKKTPVPDQNSD ICNSMSSQEESEFDKQNVEKAGEIEKELARNEALHKALDQENKTVGRNGSAFNSFILKAL RPAKISWQKCLKNIIAKHCNTVIEGNMDYSYRRPSRRNFSNIFIRPGTISYLPKILIGCD SSGSMDEVDYRRLMSEIKEICKTVQHEKISFVTIDTKITTKQVVHKVQDIVLGAGGGTCM EKFYEYIHQLKASEKPDLSILCTDGYLGGVKEWTLLLNSIDKNIINIILITDRQGYDSFI NLYGCNTPVKNTTIISIY >gi|311091283|gb|AEKJ01000024.1| GENE 135 129862 - 130806 1067 314 aa, chain - ## HITS:1 COG:BS_yvcL KEGG:ns NR:ns ## COG: BS_yvcL COG1481 # Protein_GI_number: 16080528 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 309 2 307 316 315 55.0 6e-86 MGSYASEVKKELTGLSVHPEHAKAELSAFLRMNGVLNLNQHHLSLNIVTENPAIARRIFS LIKIAYGIEPALIVSKKMKLKKNYQYLVRLQNNVKFVLHDLDIIDESFGVLTGIPSKIQQ SEQLAMSYLRGAFLAAGSINNPETSRYHLEIYSLYQLHNDDLMNLMNKYFYLNAKQTKRR SGYIVYLKEAEKIGDFLHIIGAVNAMLAFEDLRIMRDMRNSVNRLVNCDTANMKKTASAA AKQVEEIKLIDKKIGLDKLPEKLAILAKFRLQNPELTLKEVADKVPDGPISKSGINHRFQ KIKKIAQNLGEKHE >gi|311091283|gb|AEKJ01000024.1| GENE 136 130806 - 131840 1146 344 aa, chain - ## HITS:1 COG:SP1565 KEGG:ns NR:ns ## COG: SP1565 COG0391 # Protein_GI_number: 15901408 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 15 332 2 320 325 340 52.0 2e-93 MSFGENKIVKVIKARRPKIVVIGGGTGLPVILSALKQQNAEITAIVTVADDGGSSGVIRD YINVVPPGDIRNVLVALSDISQEEKEIFQYRFSSDDSFFAGHAIGNLIIAALSEMQGNIF DAVQSLSRMMHVDGRIFPASNEPLTLNAEFMDGTTEKGETEITSQHKKIKRVWVTGAKNN ARPEAVLPVLAAIMQADAVVLGPGSLFTSILPNLMIDDLGEAIRQTKAEVIYICNIMTQR GETDNMTSAEHVAIINRHLGGNYIDTALVNSAAIDMTKFNPADYDEYLRPVENDFKGLRK QNCRVITADFINQHSGLVFHDGKKIATEILNLALEAYARRKQEK >gi|311091283|gb|AEKJ01000024.1| GENE 137 131853 - 132728 1009 291 aa, chain - ## HITS:1 COG:SP1566 KEGG:ns NR:ns ## COG: SP1566 COG1660 # Protein_GI_number: 15901409 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 287 1 288 296 310 53.0 2e-84 MNVRKKQLLIVTGMSGAGKTVTVKSLEDLGYFVVDNLPPELLSSFWELINSSNDFDKVAV VIDLRVKSFYKDLVVEINSLEDNSKAHATILFLDASDDVLVSRYKETRRLPPLAQSGRLL DGIKKEREALESIKNLSNYIIDTSKLTAKDLKEQLVKKFSDDQTHVFSIEVMSFGFKYGI PIDADIVIDVRFLPNPFYIPQLKPFTGLDRKVFDYVMEKEQTQIFYHKFLDMLFTAIPGY IEEGKEKLTIAVGCTGGQHRSVSIAIQLAKDLSKKYPVDISHREISRYIRK >gi|311091283|gb|AEKJ01000024.1| GENE 138 132780 - 135596 2937 938 aa, chain - ## HITS:1 COG:SP0186 KEGG:ns NR:ns ## COG: SP0186 COG0178 # Protein_GI_number: 15900123 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pneumoniae TIGR4 # 4 936 3 942 943 1241 65.0 0 MKNDVIVMHGVREHNLKNIDLTIPKNKLVVVTGLSGSGKSSLAFDTLYTEGRRRYVESLS SYARQFLGQMDKADVDSIEGLTPAISIDQKTRSHNPRSTVGTVTEINDYLRLLWARVGKP ICPHDGTLIESQSVDQIIKQILALAPKTRIQILAPIIRQKKGEHKEVFKRIQRLGYVRII VDGVLHDINDELLLDKNKQHSISVVVDRLIIKEQIKSRLTDSVETALRLTDGYLNVDIVG DKLMKFSEYYACPSCGFTVGELEPRLFSFNAPFGACSECDGLGMKLAVDPDLVIPDPEKS LNQGAIVPWCNSKYYTDMLLQVAATFKIPMDRPFKKLTERQKRIILYGDDKVIKFHLTGD FGVNDVEQAFEGVLNNVDRRYHHPISKFMQDVMSKYMTELKCTKCQGRRLNEIALSVKIN GYDLATVSDLAITDELAFFESIALSEHDMMIAKPILKEVKARLTFLIDVGLGYLTLSRSA GTLSGGESQRIRLATQIGSNLSGVMYILDEPSIGLHQRDNARLIKTMKKMRDLGNSLIVV EHDSETMQQADYLIDIGPGAGIYGGKVVAAGTPQEVMANPDSLTGQYLSGKKKIAIPDHR RILNHGVIKLIDVSENNLKHIDVQIPLGGLVLVTGVSGSGKSTLVNLVLKRSILQKLGLM TKKPGKYKKMLGWDQIEKVIDVDQSPIGRTPRSNPATYTGVFDDIRALFAQTNAAKMRGY TKARFSFNIKGGRCEACHGDGIIKIEMNFLPDVYVPCEICHGTRYNSETLEVKYHEKNIA DVLKMTISEANEFFANIPKIKRKLQTIMDVGLGYIQLGQPATTLSGGEAQRMKLASELQK TSTGKNLYILDEPTTGLHVDDIKHLVLVLQRLVDEGNSVLIIEHNLDVIKCADWIIDLGP EGGAAGGEIVAQGTPEDVAKVEKSYTGQYLKPILNQNL >gi|311091283|gb|AEKJ01000024.1| GENE 139 135624 - 137621 2190 665 aa, chain - ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 664 1 659 662 879 66.0 0 MIRKQKNKRFELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAK LNKPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAI NDEIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRD LVNIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEIL GKCEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIE MMQEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDR RRKQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDKVVEQIIRPT GLLDPIVEVRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYL HSEIKTLERMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLV QMMGRAARNENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDI ISHTKDVDQKDKHINDFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAI IDLKK >gi|311091283|gb|AEKJ01000024.1| GENE 140 137679 - 139406 1920 575 aa, chain - ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 560 1 558 572 506 46.0 1e-143 MGAKDRLAQWLGNERLNSDMRSELMEFKKNSAWVEDAFGQDINFGTAGMRGLLEPGTNRI NFYTVGRVTEGLAKLIEENGSTAIKRGVVIAYDSRYYSREFATHAAQILGNHGITVYLFD NLRPTPELSFAVRYLKTFAGINITASHNAKQYNGYKVYGEDGAQMSPDNADRLFAFAQKV TDIFSVTCASVSTLRQKNILHMIGEDVDQAYLKELATVNLNSCLINKNADQIKIIYTPIH GAGKVLYDRAFRQAGFKNIIPVVSQSIIDPEFPTTIKPNPEFKQCFDEGIKLANDLKADL IIATDPDADRMGACVRTSDGSFQVLTGNQIATLFINYLLVNLKAAGKLSSDYELITSIVS SALPFKIAQDYGIKTKHVLTGFKFIGEEIDRMSTQNDGHFLMGFEESYGYLFKPFTRDKD AMQGALMLAEVACYYASHNKTIFDGLQEIWNKYGFAYEVTSALEMPGIGGQEKMKLLMDK LRKDPIKEIMGQHVTKTQDFLLQTETINGQMSKLEGFTQSNVLKYFLEDNTWLALRPSGT EPVVKVYVGVNKDNFSNAKQAAEDYTAAIEHILFK >gi|311091283|gb|AEKJ01000024.1| GENE 141 139423 - 140349 532 308 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 5 306 2 306 306 209 39 6e-53 MIKKYDVIIIGAGPGGLTAALYASRANLSVAIVDKGLYGGQMNNTGAIDNYPGFADITGP QLSEKMYQSAMKFGAEYFYADVQQIIVEQQMKKVITEKDEFHAPAVLIATGAVHKHLNIP GEDTYQGRGVSYCAVCDAAFFRNEEIAVIGGGDSAIEEGLYLAQTAKKVTIIHRRNELRA QPVLQKMAFANDKIDFIWNANTEEILGDGSRVTAVKYYDKNAEEHKILNVSGVFIYVGVQ ANSMAFSNLGICDEHGWIITDDHMQTKVEGIFALGDVRQKDLRQIATAVGEGSIAGQAAY HYLQTLKN >gi|311091283|gb|AEKJ01000024.1| GENE 142 140369 - 141388 1143 339 aa, chain - ## HITS:1 COG:SPy0226 KEGG:ns NR:ns ## COG: SPy0226 COG0240 # Protein_GI_number: 15674414 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 3 336 5 334 338 327 52.0 2e-89 MAKISVLGNGSWGSVLGSMLADNGNDVILFGNIAAVNQEINEKHTNEHYMKNWSLNESVK ATDDLELALKDAEIVLFVLPTKAVRIVAKNVRKVLDKLGTKPLLVTATKGIEPGSKKLIS EILTEEIYPNDLDKIVAISGPSHAENVAQKDLTAIACASTDIKNAELVQKLFSNNYVRFY TNPDLIGVEVAGAVKNVIAIAAGILVGKKFGDDAKAALMTRGLAEITRLGVKCFGADRLT FSGLAGIGDLIVTCTSSNSRNWRCGKQLGEGKPLQEILDNMGQVVEGATTVKAVHELCEA NDVDMPISEAIYRVLYENSDVDLEIKKMMGRSPKPEIRL >gi|311091283|gb|AEKJ01000024.1| GENE 143 141425 - 142258 861 277 aa, chain - ## HITS:1 COG:lin2625 KEGG:ns NR:ns ## COG: lin2625 COG0682 # Protein_GI_number: 16801687 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Listeria innocua # 5 267 8 267 277 250 48.0 2e-66 MNLIINPVAFRLGSMSIKWYGILMASGIVIALLMAIVEGKKRQIMPEDFSDFLLWGVPIG FVGARLYYVIFKWDYFAQNPGQIFAIWNGGIAIYGGLLTGLVVLILFCNSRFLPPLLMLD IIIPGVMAAQIIARWGNFINQEAHGACVSLSFLQSLHLPDFIIKQMYIAGHYYQPTYLYE SFFNLIGLIIILVLRHKKGLYKRGEVFFSYLIWYSVVRFFVEGMRTDSLYLMNTIRISQL VSVILFIVAIVLLIYRRKYKHVKWYLDGSGLKYPYER >gi|311091283|gb|AEKJ01000024.1| GENE 144 142273 - 143211 1142 312 aa, chain - ## HITS:1 COG:lin2626 KEGG:ns NR:ns ## COG: lin2626 COG1493 # Protein_GI_number: 16801688 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Listeria innocua # 28 310 26 308 312 339 55.0 3e-93 MSDMVKISELLHDNPTLTVKQGEDYLEQRVVSVSDISRPGLELTGYFDFYPKERIQLLGK TEISYSTHLDHDLRTNVFRRMATDITPCFVISRGLPIPSELLEAAEQAKVPVLTSNMPTT QLTSVLMQYLDEHLAPRKSIHGVLVEIYGMGVLIMGNSGVGKSETALDLIKRGHRLIADD RVDVYQKDDKTVVGEAPAILKHLMEIRGIGIIDIMSLFGAGAVKEKSEIQLVINLQNWDP KENYDRLGIAEKYINIFDVAVPQLTVPVKVGRNLAIIIEVAAMNFRAKKMGYDASEKFER NLSALIADNSQK >gi|311091283|gb|AEKJ01000024.1| GENE 145 143215 - 143511 168 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501055|ref|ZP_05743957.1| ## NR: gi|259501055|ref|ZP_05743957.1| hypothetical protein HMPREF0520_0565 [Lactobacillus iners DSM 13335] hypothetical protein LineA_00635 [Lactobacillus iners AB-1] hypothetical protein HMPREF9213_0157 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_0828 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0782 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0481 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0311 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0632 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9216_0774 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0522_1229 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0520_0565 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_0157 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_0828 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0782 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0774 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9217_0632 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_0311 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0481 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF0522_1229 [Lactobacillus iners UPII 143-D] # 1 98 1 98 98 80 100.0 3e-14 MKFKYFVIAILAFIILNLILLLNIIYKLLTFLFPIFFIIDILIIVFGALSIYIAIHKAKK KYSSYIKKFYYNDNCKQASTSHRKEARNVTIDDVDKED >gi|311091283|gb|AEKJ01000024.1| GENE 146 143528 - 144526 1064 332 aa, chain - ## HITS:1 COG:SA0709 KEGG:ns NR:ns ## COG: SA0709 COG1186 # Protein_GI_number: 15926431 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Staphylococcus aureus N315 # 1 329 1 330 330 354 53.0 1e-97 MADDTFWNDQTNAQKIIEATNYMREKVDKYQTLSSALADAKTAVELYNMEPENDMLMEIT AEVEKLKNEFNDYELHLLLSGKYDDHNALLEIHSGAGGTEAMDWANMLFRMYQRWCDSHN LTFEVDDFQVGDEAGLKSVSVRVQGNNAFGLLKSENGVHRLVRISPFDSAKRRHTSFASV EVIPEIDKSINIEINPDDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTSSQAQRSQ FQNRETAMDMLRAKLFKLEEDKKRKQTEALKGNQKEINFGSQIRSYVFHPYNMVKDHRTD YETSDTIGVMNGNLDPFIYAYLQWMLSQENPE >gi|311091283|gb|AEKJ01000024.1| GENE 147 144686 - 145876 1516 396 aa, chain - ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 390 393 781 839 463 62.0 1e-130 IPTNRPKARKDLPDILYPTLDSKFEAVVEDIQTRHAKGQPVLVGTVAIESSERLSKMLDQ AGIAHAVLNAKNHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTE RHESRRIDNQLRGRSGRQGDPGTTRFYLSLEDDLMKRFGSERVKAFLDRIAGSDDEKVIE SRMITRQVESAQKRVEGNNYDTRKQTLQYDDVMRTQREIIYGERMQVITEEHSLKEVLIP MMQRTIAHQIDLYTQGSKNQWRTDQIRDFIASSLASEEDAKKINLKNITVDELKEQLYEM VDDNYAEKERQLVDPEQMLEFEKVVILRVVDDRWTDHIDAMDQLRQSISLRGYGQLNPLV EYQEAGYRMFEEMISNIEYDATRLFMKARIVPNMSR