Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:26:27 2011 Seq name: gi|308166256|gb|AEHO01000001.1| Lactobacillus iners LactinV 09V1-c contig00096, whole genome shotgun sequence Length of sequence - 7526 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 3, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 72 - 242 191 ## gi|309804138|ref|ZP_07698218.1| conserved domain protein + Term 273 - 318 8.4 + Prom 256 - 315 6.1 2 2 Op 1 . + CDS 335 - 478 96 ## gi|259501592|ref|ZP_05744494.1| biotin-acetyl-CoA-carboxylase ligase + Term 507 - 538 0.2 + Prom 481 - 540 4.2 3 2 Op 2 . + CDS 624 - 836 296 ## gi|309804424|ref|ZP_07698495.1| hypothetical protein HMPREF9213_1287 + Term 1077 - 1146 26.3 + TRNA 949 - 1020 64.0 # Glu TTC 0 0 + TRNA 1039 - 1129 53.9 # Ser TGA 0 0 + TRNA 1140 - 1213 77.0 # Met CAT 0 0 + TRNA 1216 - 1288 62.0 # Asp GTC 0 0 + TRNA 1295 - 1367 78.2 # Phe GAA 0 0 + TRNA 1375 - 1456 64.5 # Tyr GTA 0 0 + TRNA 1461 - 1531 49.9 # Trp CCA 0 0 + TRNA 1546 - 1621 56.4 # His GTG 0 0 + TRNA 1626 - 1697 65.9 # Gln TTG 0 0 + TRNA 1721 - 1791 71.2 # Cys GCA 0 0 + TRNA 1825 - 1908 61.6 # Leu CAA 0 0 + Prom 1827 - 1886 80.3 4 3 Op 1 25/0.000 + CDS 2021 - 3175 963 ## COG0438 Glycosyltransferase 5 3 Op 2 4/0.000 + CDS 3177 - 4220 1042 ## COG0438 Glycosyltransferase 6 3 Op 3 . + CDS 4220 - 4978 362 ## COG0392 Predicted integral membrane protein 7 3 Op 4 . + CDS 5041 - 5229 214 ## FI9785_1551 hypothetical protein 8 3 Op 5 . + CDS 5288 - 7357 2015 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 7363 - 7410 12.2 Predicted protein(s) >gi|308166256|gb|AEHO01000001.1| GENE 1 72 - 242 191 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309804138|ref|ZP_07698218.1| ## NR: gi|309804138|ref|ZP_07698218.1| conserved domain protein [Lactobacillus iners LactinV 11V1-d] conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners LactinV 11V1-d] conserved domain protein [Lactobacillus iners LactinV 09V1-c] # 1 56 1 56 56 65 100.0 2e-09 MEEQKQKPFSAKRWHEDASPDQIFGRIKSKKRLEKNKREMEKFLRIQKNYLKKEKD >gi|308166256|gb|AEHO01000001.1| GENE 2 335 - 478 96 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259501592|ref|ZP_05744494.1| ## NR: gi|259501592|ref|ZP_05744494.1| biotin-acetyl-CoA-carboxylase ligase [Lactobacillus iners DSM 13335] biotin-acetyl-CoA-carboxylase ligase [Lactobacillus iners DSM 13335] # 1 46 14 59 60 86 95.0 5e-16 MYTLYKIKIWFIQTFCCVHEWEVVVKDVPFHGTLYRCKKCGKGTTKT >gi|308166256|gb|AEHO01000001.1| GENE 3 624 - 836 296 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309804424|ref|ZP_07698495.1| ## NR: gi|309804424|ref|ZP_07698495.1| hypothetical protein HMPREF9213_1287 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0105 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9213_1287 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0105 [Lactobacillus iners LactinV 01V1-a] # 1 70 1 70 70 96 100.0 6e-19 MPKDVQQALEEKEHGKQVSVNEESNTAETQEQETANTAVEKIDADKIVQPYIDRNKKIFF RKRLACNRNI >gi|308166256|gb|AEHO01000001.1| GENE 4 2021 - 3175 963 384 aa, chain + ## HITS:1 COG:SPy0516 KEGG:ns NR:ns ## COG: SPy0516 COG0438 # Protein_GI_number: 15674620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 378 1 381 444 341 46.0 1e-93 MNIGLFSDTYFPQISGVATSIKTLKEALEQQGHSVFIFTTTDPHVDKNIVEPNIFRVASV PFVSFTDRRVAFRGLFQVAKIANEVKLDIVHTQTEFSMGLIGKYVAYSLKIPSVHTYHTM YEDYLHYVLNGHLLKPYHVKQFTKAYLYHMNGVIAPSRRVEDTLLRYGVKTPIRVIPTGV DISGINAAPVCDVRKQLGLLSSDYVILTLSRIAAEKKINRILDCLAILVDEFPNLKLVIA GDGPDVGPLKDQVLRLNLEKYVIFSGNVDHSNVANFYRMADLFVSASDTETQGLTYIESL SVGTPCVVYNTDYTRNIFDSSSLGSVFDTKQEMYDLIRSYILRTPNKADDSIFQKKLSEI SAETFAKNVAEFYDDVIMQYKRIK >gi|308166256|gb|AEHO01000001.1| GENE 5 3177 - 4220 1042 347 aa, chain + ## HITS:1 COG:lin2699 KEGG:ns NR:ns ## COG: lin2699 COG0438 # Protein_GI_number: 16801760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Listeria innocua # 1 333 1 334 341 354 53.0 2e-97 MIKINMFSKADTVQGQGVGSAYNELIGLLRKNLSNEFQVTINQYSQSDITHYHTINPTYF INSFSKNRGRKIGYVHFLPETLEGSIKLPSGAKTVLYKYVIDFYKRMDQIVVVNPIFIDK LANYGIDRSKIKYIPNFVSKSVFYEQTDAQKKQFREKVGIPDDKFVIFGDGQVQVRKGVD DFAKLAQANPDIQFIWAGGFSFGKITEGYDRLKKLVANPPKNLLFTGIITRQELVNYLNI ANLFLLPSYDELFPMSVLEAFSCGTPVLLRNLDLYKAIIDGYYMSGNNFDDFNQIIQSVL SDPEKLKRYHTLSLKASDEYSEANLTKVWREFYLEQYNLGKKMGQIK >gi|308166256|gb|AEHO01000001.1| GENE 6 4220 - 4978 362 252 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 3 250 6 252 357 98 29.0 1e-20 MNKRHIIGILFVLLISCIVICKELSTINIATLIKDANLINVFYCVLIFVTLAFSFLCESF ILVILNYEQNSLIPPFWSFVRVSLVQSLFNAITPMSTGGQPAQIVALKQMGISVGKATSV LLMKFIIYQISVFGIYIFAFVTCFQSILAKFDGIAVFIFIGFILHISSIIFLLFILFAHN FTVKLTKKIGNFLFYLIKSKKLSNWQNNVLNQINNFYVEGEKLRSNKMKLFCCFCLTLLQ LLCFYSVPFLFC >gi|308166256|gb|AEHO01000001.1| GENE 7 5041 - 5229 214 62 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1551 NR:ns ## KEGG: FI9785_1551 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 60 275 334 338 78 68.0 7e-14 MSIVPIPGAEGGAEFGFQKLFSTFIDSKSLLVLALFLWRFATYFLEIILGLIFWTIKPKK HY >gi|308166256|gb|AEHO01000001.1| GENE 8 5288 - 7357 2015 689 aa, chain + ## HITS:1 COG:BS_yfnI KEGG:ns NR:ns ## COG: BS_yfnI COG1368 # Protein_GI_number: 16077793 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Bacillus subtilis # 4 654 15 653 653 568 48.0 1e-161 MARLKALFNWLTKTKIGYFIILLTFFWLKNYIVYLTKFNLGVVGSTQNFLLLFNPIPAGI ILLGICLFFKGRKAYWLALLVDTILSMWLFANILYYREFSDFLSASIIKTSGSSSDNLGK SIAGILHFSDFFVFLDVAIIAILLIFKIIKIDVRNLKFKISALVELLAIALAGLNLTMAQ KDRSGLLTRTFDNNYIVKYLGLNAFTVYDGIKTVHTSTVMAKANHNDLKSVQKYVQRHYI EPNNEYFGVAKGKNVLVIHLESFQQFLIDYKVDGKEVTPNLNKLYHSKNTLSFKNFFNQV GQGKTSDAEMMLENSIYGLQAGSAMSSYGTTNTFESAPAILRQKANYTSAVMHGGAGSFW NRDNAYKSFGYDYFFPLSFYKNKKHYYVGYGLKDKIFLSQSVKYIEHLTQPFYLKLITVT NHYPYEIDKKNQSIDKTDTGDKTVDGYVQTAHYLDQAIGELLAYLKKTKLDKNTLLMLYG DHYGISGNHHRASAQLLGKSSFNNFDNLQFQRVPLMFHMNGLKGGIKRTYGGEIDARPTL FNLLGIKDNDLIQFGHSLLSPDNPQIVAQRNGDFVTPEYSKVEGSYYYTKSGKRIKHLTV EQKRKISLINNIVTSELSLSDRIITGNLLRFYKPDWFTTVKRKKYSYKKSDTMKELKKRE KKRKNSLWYLNNKKTTQSMFKTDAPELDK Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:26:48 2011 Seq name: gi|308166255|gb|AEHO01000002.1| Lactobacillus iners LactinV 09V1-c contig00067, whole genome shotgun sequence Length of sequence - 1874 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 129 - 1663 99.0 # AY958899 [D:1..1547] # 16S ribosomal RNA # uncultured bacterium # Bacteria; environmental samples. Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:26:50 2011 Seq name: gi|308166254|gb|AEHO01000003.1| Lactobacillus iners LactinV 09V1-c contig00043, whole genome shotgun sequence Length of sequence - 1845 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 4 - 76 86.4 # Val TAC 0 0 + TRNA 79 - 151 84.3 # Lys TTT 0 0 + TRNA 167 - 248 59.0 # Leu TAG 0 0 + TRNA 281 - 354 92.0 # Thr TGT 0 0 + TRNA 359 - 430 79.2 # Gly GCC 0 0 + TRNA 443 - 528 68.7 # Leu TAA 0 0 + TRNA 538 - 614 78.4 # Arg ACG 0 0 + TRNA 618 - 691 86.0 # Pro TGG 0 0 + TRNA 719 - 792 73.7 # Met CAT 0 0 + TRNA 806 - 879 89.6 # Met CAT 0 0 + TRNA 915 - 988 77.0 # Met CAT 0 0 + TRNA 991 - 1063 62.0 # Asp GTC 0 0 + TRNA 1070 - 1142 78.2 # Phe GAA 0 0 + TRNA 1156 - 1226 61.2 # Gly TCC 0 0 + TRNA 1233 - 1306 91.8 # Ile GAT 0 0 + TRNA 1309 - 1398 46.8 # Ser GCT 0 0 Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:26:53 2011 Seq name: gi|308166243|gb|AEHO01000004.1| Lactobacillus iners LactinV 09V1-c contig00008, whole genome shotgun sequence Length of sequence - 7247 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 3, operones - 2 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 12/0.000 - CDS 159 - 1088 477 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 2 1 Op 2 26/0.000 - CDS 1106 - 1999 847 ## COG0130 Pseudouridine synthase 3 1 Op 3 32/0.000 - CDS 2060 - 2416 551 ## COG0858 Ribosome-binding factor A 4 1 Op 4 . - CDS 2437 - 4623 2366 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 5 2 Op 1 . - CDS 4739 - 5071 345 ## LGAS_0814 translation initiation factor IF-2 6 2 Op 2 8/0.000 - CDS 5076 - 5381 182 ## PROTEIN SUPPORTED gi|15895077|ref|NP_348426.1| hypothetical protein CAC1801 7 2 Op 3 22/0.000 - CDS 5472 - 5657 254 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 8 2 Op 4 . - CDS 5703 - 6677 642 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 9 2 Op 5 . - CDS 6620 - 6790 79 ## gi|315653432|ref|ZP_07906354.1| transcription elongation factor NusA - Prom 6826 - 6885 6.1 10 3 Tu 1 . - CDS 6899 - 7246 183 ## COG0779 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|308166243|gb|AEHO01000004.1| GENE 1 159 - 1088 477 309 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 21 309 20 315 317 188 34 1e-47 METILLDNPIDNRKICSNAVVVLGFFDGVHIAHQKIIFKARKIADDKQVPLVVLTFDKHP KELYLDDKNFKYIDTLSEKTAKMRKFNVDLLVVMTFNESTCRLKPADFIDNVILMFNPSV VVVGYDYTYGPKKIANIQTLLTYSKGKFDLVIEPEATFKGVKIGSTEIKEAISHGNVKLA ADLLGCPYSMSGVVVHGFHRGHMLGFPTANLCINCKKILPCNGVYATQTLIKGKLYNSMT SVGYNDTFNNNKKTIETYIFDFCEDIYGEKIILYWYEFIRDNIKFNDINSLINQLNIDKT NIQRYFDKK >gi|308166243|gb|AEHO01000004.1| GENE 2 1106 - 1999 847 297 aa, chain - ## HITS:1 COG:SP1212 KEGG:ns NR:ns ## COG: SP1212 COG0130 # Protein_GI_number: 15901075 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 290 1 288 292 233 42.0 4e-61 MLNGIIVLNKPRGVTSSDCVYKLRKLLKIKKIGHAGTLDPEVNGVLPIAVGQATKLIEKM HEKDKKYIGVGLLGFATDSYDVTGKKIAEKKLITPFSDEEIQSGMKKLVGDISQMPPIYS AVKVNGKRLYEYARENIEVQRPIRNVTVKSYNLVNTSTYDCEKQQQTFDFSVTCSKGTYV RSLVNDLGTILDVPAVMVKLTRIASSGYNIADAVTLEDISRQIDQPQFWLQPIDSFFDNV EHFVLNSEQYDRVRNGAALKINASSNEVALVYSGKIKAIYEKKLNIYKPQLMLLQND >gi|308166243|gb|AEHO01000004.1| GENE 3 2060 - 2416 551 118 aa, chain - ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 3 114 6 117 118 100 42.0 9e-22 MKHRIGRVEGEILRELTKILRKEISDPRLREISITAVECTNDFSYATIYYSLLTDNSVRE EEVSQGLEKAKGLMRHLLSNNLTLFKVPELIFKRDNSVAYGSKIDQLIKQVQEQDKKR >gi|308166243|gb|AEHO01000004.1| GENE 4 2437 - 4623 2366 728 aa, chain - ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 142 728 196 782 782 738 65.0 0 MPVEGAEAVRARVKVAKKVAGPKIIKLSPARQKADNETKNDQVKHSNAKRDFRPRQTKAT KSMDISSVISDSPVPPEENRKLRNKEYGKTGRKKQRDDDADFERSEQSDKARRRKNRKVK GQQQVDLIKKQPTQRKDRPLPEILVFEEGMNAQDLGKLLHREPAEIVKKLFMLGIMTNQN QSLSKDTIELLAAEYGIESKEKVHEDISDIDNLYEHEMEVSKKSQNLVKRPPVVTIMGHV DHGKTTLLDRLRNTNVSAHEAGGITQKIGAYQVKLDDRLITFLDTPGHAAFSNMRARGAE VTDIVVLVVAADDGVMPQTVEAIDHAKSAGVPIIVAVNKIDKPGANPDHVMEQLMKYGLV PEDWGGDTIFVKISAKSGENVDDLLQMILLQADMMELQADPNQKAIGTVIEARLSKGRGP VADVLVQQGTLNIGDPIVIGDTFGRVRVMTNDKGRRVKKATPSTPVEITGLSDVPEAADK LVVFEDEKTARSVGEQRARNSLEKQRENTQHVTLDNLFDTMKKENMKEVGIVLKADVQGS TEALQQSLEKIDVEGVRVNIIHAGVGAINESDVTLASASNAFIIGFNVRPTATARSQADN EGLDIRLYNIIYKAIDDVEAAMKGMLEPTYEEKVVGSLTVRETWKVSKVGTIAGALVDSG YITKDSGVRVIRDGIVKYDGKVASLKRFKDDVKEVKQGFECGITIENFNDIKIDDQLEAY EMQEVPVK >gi|308166243|gb|AEHO01000004.1| GENE 5 4739 - 5071 345 110 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0814 NR:ns ## KEGG: LGAS_0814 # Name: infB # Def: translation initiation factor IF-2 # Organism: L.gasseri # Pathway: not_defined # 1 83 2 95 882 75 48.0 7e-13 MTRIRLYELAKELGIENKVIVEKARELGFDVKSHMSSLTDDQINKIRELYKNKSDKKRQN KSKIKVSVGALRRTNSNEDNNKKKKRLIQPKIQTLRKKKQIIQNQQHAIY >gi|308166243|gb|AEHO01000004.1| GENE 6 5076 - 5381 182 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15895077|ref|NP_348426.1| hypothetical protein CAC1801 [Clostridium acetobutylicum ATCC 824] # 1 99 1 100 102 74 36 2e-13 MNNKALNMLGLAQKAGKMVGGYDATNIAILNKKAMLVFIASDISNNTKEKILFVCQKNNI NVCRQFSTAELSHIMGKNRKILAVTDSGFAKAIMKKINEGE >gi|308166243|gb|AEHO01000004.1| GENE 7 5472 - 5657 254 61 aa, chain - ## HITS:1 COG:BH2415 KEGG:ns NR:ns ## COG: BH2415 COG2740 # Protein_GI_number: 15614978 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Bacillus halodurans # 1 58 8 65 91 57 51.0 8e-09 MRKDLITNTMMPKKELVRIVVDKEKNIFVDPTGKKAGRGAYVSLEPEKIQQAKKEEFLKI V >gi|308166243|gb|AEHO01000004.1| GENE 8 5703 - 6677 642 324 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 1 306 44 347 537 251 44 9e-67 YNQAQNVEVIFDENKGKFIVQAVKTVVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVT PQNFGRLAAQTAKQVIMQRLREAERAHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVE AVMPHNDQMPGEVYKPQDRIKVLVTKVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNG TVEIISIAREAGDRTKIAVKSSDPNIDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEED PSDYIANALNPAEVIAVQFGEANDDKSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKID IKPESQVEFVDEDSSANGEVESAD >gi|308166243|gb|AEHO01000004.1| GENE 9 6620 - 6790 79 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653432|ref|ZP_07906354.1| ## NR: gi|315653432|ref|ZP_07906354.1| transcription elongation factor NusA [Lactobacillus iners ATCC 55195] transcription elongation factor NusA [Lactobacillus iners ATCC 55195] # 1 37 13 49 374 67 100.0 5e-10 MSKELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKIIIRHKMLRLSLMRTKVSL >gi|308166243|gb|AEHO01000004.1| GENE 10 6899 - 7246 183 115 aa, chain - ## HITS:1 COG:SP0552 KEGG:ns NR:ns ## COG: SP0552 COG0779 # Protein_GI_number: 15900464 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 9 105 24 119 159 87 47.0 6e-18 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP DPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKLMGRKVMKELCWIMIWIK Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:27:10 2011 Seq name: gi|308166194|gb|AEHO01000005.1| Lactobacillus iners LactinV 09V1-c contig00049, whole genome shotgun sequence Length of sequence - 46799 bp Number of predicted genes - 51, with homology - 47 Number of transcription units - 36, operones - 10 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 8742 11408 ## COG1404 Subtilisin-like serine proteases - Prom 8770 - 8829 7.8 - Term 8872 - 8912 7.0 2 2 Tu 1 . - CDS 8991 - 9377 480 ## COG2314 Predicted membrane protein - Prom 9407 - 9466 7.1 - Term 9479 - 9524 5.2 3 3 Tu 1 . - CDS 9564 - 14315 6862 ## HMPREF9243_0550 LPXTG-motif cell wall anchor domain protein - Prom 14407 - 14466 5.1 4 4 Tu 1 . - CDS 14695 - 14889 298 ## FMG_1333 putative biofilm-associated surface protein - Prom 15035 - 15094 12.0 - Term 15370 - 15407 2.3 5 5 Op 1 . - CDS 15485 - 15907 441 ## HMPREF0868_0260 hypothetical protein 6 5 Op 2 . - CDS 15909 - 16133 345 ## HMPREF0868_0259 Xre family toxin-antitoxin system antitoxin protein - Prom 16171 - 16230 7.4 - Term 16237 - 16278 7.4 7 6 Tu 1 . - CDS 16303 - 18441 2737 ## SERP1011 cell wall associated fibronectin-binding protein - Prom 18635 - 18694 6.1 8 7 Tu 1 . - CDS 18732 - 18953 136 ## gi|309809821|ref|ZP_07703673.1| Gram-positive signal peptide protein, YSIRK family - Prom 18992 - 19051 3.9 9 8 Tu 1 . - CDS 19075 - 20574 1875 ## HMPREF0868_0951 LPXTG-motif cell wall anchor domain-containing protein - Prom 20666 - 20725 7.3 - Term 20753 - 20796 5.8 10 9 Tu 1 . - CDS 20800 - 21717 711 ## COG3274 Uncharacterized protein conserved in bacteria - Prom 21893 - 21952 3.8 - Term 22002 - 22041 -0.9 11 10 Tu 1 . - CDS 22079 - 22681 654 ## HMPREF0573_11545 hypothetical protein - Prom 22710 - 22769 7.7 - Term 23158 - 23202 -0.5 12 11 Tu 1 . - CDS 23221 - 23859 425 ## Apre_0680 hypothetical protein - Prom 23930 - 23989 6.2 + Prom 23501 - 23560 6.9 13 12 Tu 1 . + CDS 23747 - 24007 84 ## + Term 24251 - 24294 6.2 14 13 Tu 1 . - CDS 24061 - 24648 185 ## FMG_1423 hypothetical protein - Prom 24669 - 24728 8.2 - Term 24861 - 24901 -0.7 15 14 Tu 1 . - CDS 25085 - 25510 507 ## COG0406 Fructose-2,6-bisphosphatase - Prom 25536 - 25595 3.4 16 15 Tu 1 . - CDS 25639 - 26145 220 ## PROTEIN SUPPORTED gi|50365462|ref|YP_053887.1| acetyltransferase of 30S ribosomal protein L7 - Prom 26201 - 26260 3.0 17 16 Op 1 . - CDS 26302 - 26973 454 ## Fisuc_2495 hypothetical protein 18 16 Op 2 . - CDS 26966 - 27298 385 ## HMPREF0868_0167 hypothetical protein 19 16 Op 3 . - CDS 27298 - 27672 318 ## HMPREF0868_0165 hypothetical protein 20 16 Op 4 . - CDS 27672 - 28157 847 ## Fisuc_2497 hypothetical protein - Prom 28202 - 28261 4.9 - Term 28331 - 28374 -0.6 21 17 Op 1 . - CDS 28400 - 28888 324 ## HMPREF0868_0163 toxin-antitoxin system, toxin component family protein 22 17 Op 2 . - CDS 28936 - 29226 400 ## HMPREF0868_0162 DNA-binding helix-turn-helix protein - Prom 29274 - 29333 8.2 - Term 29410 - 29446 1.1 23 18 Tu 1 . - CDS 29524 - 30834 1040 ## COG0477 Permeases of the major facilitator superfamily - Prom 30855 - 30914 5.2 + Prom 30949 - 31008 6.4 24 19 Tu 1 . + CDS 31029 - 31328 452 ## HMPREF0424_0740 hypothetical protein + Term 31496 - 31537 -0.8 25 20 Op 1 . - CDS 31425 - 31898 404 ## HMPREF0424_0739 hypothetical protein - Prom 32033 - 32092 5.0 26 20 Op 2 . - CDS 32111 - 32584 504 ## gi|309804456|ref|ZP_07698523.1| hypothetical protein HMPREF9213_0967 - Prom 32619 - 32678 10.2 - Term 33266 - 33299 1.1 27 21 Tu 1 . - CDS 33344 - 34369 977 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 34427 - 34486 13.0 28 22 Op 1 . - CDS 34672 - 34908 274 ## HMPREF0421_21053 hypothetical protein 29 22 Op 2 . - CDS 34880 - 35206 412 ## HMPREF0421_21067 toxin-antitoxin system 30 22 Op 3 3/0.000 - CDS 35269 - 36129 736 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 36158 - 36217 1.8 31 22 Op 4 . - CDS 36219 - 36749 231 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 32 23 Tu 1 . - CDS 36925 - 37119 287 ## HMPREF0868_0396 toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain-containing protein - Prom 37215 - 37274 6.8 + Prom 36985 - 37044 4.0 33 24 Tu 1 . + CDS 37100 - 37294 98 ## + Prom 37522 - 37581 7.1 34 25 Tu 1 . + CDS 37609 - 37914 408 ## HMPREF0421_21051 toxin-antitoxin system 35 26 Tu 1 . - CDS 37968 - 38297 296 ## - Prom 38358 - 38417 3.5 - Term 38421 - 38478 2.1 36 27 Tu 1 . - CDS 38503 - 39135 821 ## HMPREF0421_21058 XRE family transcriptional regulator - Prom 39218 - 39277 5.0 - Term 39489 - 39535 11.0 37 28 Op 1 . - CDS 39716 - 40012 387 ## COG3077 DNA-damage-inducible protein J - Prom 40087 - 40146 2.6 38 28 Op 2 . - CDS 40211 - 40822 813 ## COG4300 Predicted permease, cadmium resistance protein - Term 41194 - 41240 11.0 39 29 Op 1 . - CDS 41269 - 41448 147 ## HMPREF0421_21066 addiction module toxin RelE 40 29 Op 2 . - CDS 41420 - 41716 428 ## COG3077 DNA-damage-inducible protein J - Prom 41753 - 41812 5.1 - Term 41737 - 41772 -0.6 41 30 Tu 1 . - CDS 41846 - 42280 484 ## HMPREF0421_21046 hypothetical protein - Prom 42377 - 42436 7.9 + Prom 42348 - 42407 8.2 42 31 Tu 1 . + CDS 42501 - 42680 56 ## COG1476 Predicted transcriptional regulators + Term 42734 - 42778 6.0 - Term 42795 - 42836 10.2 43 32 Tu 1 . - CDS 42875 - 43051 87 ## HMPREF0421_21071 phage integrase family site-specific recombinase - Prom 43185 - 43244 3.5 - Term 43189 - 43218 0.5 44 33 Op 1 . - CDS 43250 - 43834 478 ## Apre_1785 hypothetical protein 45 33 Op 2 . - CDS 43861 - 44022 60 ## 46 33 Op 3 . - CDS 44000 - 44434 336 ## COG0295 Cytidine deaminase - Prom 44546 - 44605 6.0 47 34 Op 1 . - CDS 44632 - 45117 612 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 48 34 Op 2 . - CDS 45195 - 45350 80 ## FMG_0970 hypothetical protein - Prom 45420 - 45479 2.3 49 35 Op 1 . - CDS 45510 - 45872 354 ## gi|309804443|ref|ZP_07698510.1| 30S ribosomal protein S18 domain protein 50 35 Op 2 . - CDS 45865 - 46272 534 ## SSA_1628 MutT/NUDIX family protein, putative - Prom 46366 - 46425 10.2 51 36 Tu 1 . - CDS 46427 - 46600 164 ## gi|309804449|ref|ZP_07698516.1| conserved hypothetical protein - Prom 46718 - 46777 5.0 Predicted protein(s) >gi|308166194|gb|AEHO01000005.1| GENE 1 3 - 8742 11408 2913 aa, chain - ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 2682 2913 813 1026 1052 79 33.0 1e-13 MFGKNNKYMRDLKQREKVTYYGIRKFSVGVVSVALSSLFLLGYANSAAASTTGATDVQHS EKAKIKVGADINNEKAGKVDKNSLADSAPKKEEAETKAKSKVKAKINEIIHDKKQVDKVL ASVKSAKNGQAVVYQDRSGDAVSNPEWLKKPNILELQRYRGVNDQGEKKPVGSDNVGEWN DVTLKTDMYAHVEERNGSKYLVFDVFFNNDGQSMLKHSNQQQYVWQIPYQIADLNNGGYK GDTLSNLSIDFYDKNASSAYNAVLSRDFSNFYKNNANSAKLNPLQTDHHFGQSIYLYTLG VRAGRSRNQDLSDTFHSNKDDQTIKNATKLSAPYSSYSYGIGVRTTAVNEAAHLHCDVKL RPGVTTEDIQNAYTWANTSSYGRTTNSAYTFISGREPYGEENLPRKKSDSEAPKLYLNGQ PMTDGKEFTTYQGESTPLKFEASDNEGKLKNFKVTGMPSGDFSVDNQSATEAAKYSKDYS QKKFENKVNGQPKEKIYDIAVTATDEAGNTTSHSVKVQLKNQSSKYAAPTADVITVKRGE KPSNNDIFAKLKYNKADDKKGTPSVVSIPDTNLAPDAFKTGDTADAGSAVVKVTYSDGSY HTVNVPVKVKKPDNLANTLTGQTVEVKVGDPLKQTADKKVDAKQYVTTTGNVQPQKVEFE NEPRTDLAGTFKRKAIATYPDGSKNETDVTFKVKPLKPVIQTNLIGHANQENQKVTVSVG DGVPDGAIVRLTDDKNNTLGEGQVNNGSAEVVIKDKMPDNTKVKATTIVNNGGEITSDPS DPSNVSQDDVAPTLTVSAPSEITAGDDLTFTFDAKDNVKVNFEIATGIASGLSDLDMGNL MNILTQQKTTYSSYQDDHMQGTTTLLAVPDSAVGKHEFTFKVTDDANHTVTKKVSVTVYP KLKLNVEPITVPLGGKLPDAKVALGKTEGIAEVKNKKGSVDIPAPTIQWVEQPKTDKVGN ALPGKVKIKFSDSRGEKIVDIPVNVQDQNKPEIKVYKKENGKYVEITDKDNDGYIKLDSY AREDVDFKITSTDNSGQINDLSMMPIPGVKSSKPDGTGSKDNPKSFTLTGQAPLGDKYSR VVKAVDPSGNTTTLKVRLYPHNQSEKYGNKVQEKLLTYKMSDGNKYPDPKDGISQEGNDF PAGSTYSWATEPKWTDPTSGKDGKGTPKEVSICVTLPDGSTKNVKSKLTIIDDVPPVIEE PEDAETVTKDNHTVYRVKVARGGETKISLKLHDTSGQLQSLTTAGTSFVTAGTLSKTTGA TIDNPATVDLTVKAPNQAAEEGKPWQETVTLTDAKGNTTTATLELYADKDADLYDPQINT VAKDNVQEKVTQDDIKKAVINDKKYPNNYQSPEITVDGDLEQLGKDKKDYFVPVTVTYPD QSKDHVQVHVTIGNDTLAAKYEAKNGHISVDYGTSKDTIKNKVENASENGVKVKEGKKTV KKAEYTVQVLEESSLPDGKIAGKFEVPVKVVYKDGSADTTTVKVTVEQPQSKSDVSQSIG QVEKEYGQATQENDVLGAIKQDDGPKVSSHIKAKTIVPGQTLPDGKHPGTQKVRVKLTFD DGSHKVVEVPVITKDPLNKQYEPVATELKKEYGQPATNEEIEKQVTVQDSSKKTAPKENV TKIEVVPGQTAIDGKQPGTVKVQVKVTYKDGTSDIVNVPVTVADPASVTYPPKADALTVP WGTKQDDIKNQIVSKVTIDPKYPDKTKLKIEVAKNANVPDGQTSTKVNVPVEVTYPDGSV AIVQVPVTVGNKQADNYDPTVTPIKKTYAERKITADDIKKAVTVNSLDPNKGDYTISVDD TIPADGFAEGHTDVAVTIKYKDGSTDKTKVPVIIGQSEAGYTEKNLPQAKTIYKNYGEEI KDSEITGAVSVPNYTKSDKQTPGDANKLQFTIAKDSAKPDSHKSGKTLVKVVVTYEDGSQ ATVDVPVIVKAPDTEQYTPAATTVEKEFGKQTSEDDIKKAITISGYPEDKKNKIKYKVST DKIPNGQTAGDFTVPVEITYADRSKGNIDVLVKVKSPQPKTTDNTVFVGTIPDAENSISN KDQYPKNTTFEWEKTPDTSKAGEPTGNILIHIPGQKDPLKAENVKVKVVAVPETQSINVF EGETPEASKGIKSKEGQTTTAEWQKDPAGVAQIPDTSTAGTVKGKVVVKVPSVQTPATVE VTVNVLPAPKGGTINTNVNGSVDPKSGVKGNDKYPDETTYVWKDGNPDLTQPGIVTKKVT VKVPGMTPKEVEVTINVLPNPAGQDQVTLQGQTPDPKKSVADHDKYPKGTTFKWTKEPST DNPGETAGKVEIIVPGSDKPIPVDAKLKVIPYPTKQHRVVLQDPEGKTPLNAKDSIKNAD KLPSDPNNATAFTWKDGKVPDNKVPGNKNGVVLVKIPGVDKEIEVPTTIEVVPNPNANDG IKVAKGGDPKPEDSIANIGDLPSGTTFKWKKDRKPNTENPAEKVPGVVEVTIPGIDHPIE VPVNVVVTDKPFINNGAATNDSGDKNKTEITGKSLPGTKIEVQDENGKKIGEGVTDQEGK FQIAVTPKQAAGKQLKLIPTNNNQTGDATTVTVTEKPAKPTIDTPENGSVTIKPADNANN VSIDVDMVPNTVNEVIDENEPQPKQTIAAHKDKDGKWKLDGDVPTGVTIDPETGAITIPA EAVKDGSPISAIAKNKDGQSSDPAKGTVGFIKPQIINQSANNDDTKNKTIVTGKTLPGAV VKIVGPNGHEFTDSKTPVKADKDGNFTVEIPKQEQGTLLTITPINGPKAGTPVNVAVGIS ITDQKAKNTSDKPDKTVVSGETAPNAKVTITDTDGNPIKDKSGQPVSVTADDKGHFTVDI PKQADGTDIVLTPSLKNGDKPNLVGEPVNATVKDTPVVKDGKAINDPKTPDKTVVSGKTT PKAQVEVKDKSGNKVGEGTADDQGHFTIQVPKQ >gi|308166194|gb|AEHO01000005.1| GENE 2 8991 - 9377 480 128 aa, chain - ## HITS:1 COG:SA1057 KEGG:ns NR:ns ## COG: SA1057 COG2314 # Protein_GI_number: 15926797 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 64 128 2 67 67 74 53.0 5e-14 MAKVLKTNVSKTIIGLDNGSIEEVDTASLDFIPQVDDELEVYKTGDEIIVRKCNKEQFYH NGRRVNKLVYALLAIFLGSFGIHKFYAGRMVGIVYILFFWTCIPGLIGFIEGIAALVKEA DSDGNIYL >gi|308166194|gb|AEHO01000005.1| GENE 3 9564 - 14315 6862 1583 aa, chain - ## HITS:1 COG:no KEGG:HMPREF9243_0550 NR:ns ## KEGG: HMPREF9243_0550 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: A.urinae # Pathway: not_defined # 469 1078 2 615 764 275 36.0 2e-71 MRYTFTKKAQEYGHFTQRVMEPVFIDAKGVPVNNKNVDVEASIGSHKSQKEVEVNYDLPV KEGEDNLNSNGNANLSDIDESTGTYKETIYVNNKQREQNNTRILIENGGKNSFTTFDGQV ANSIEVYKVKDPSKLSGSMDLDMDNLEKVSPTQYDQKLKADKSGIEINLKNKGTKDVYVV RYNGKYDASKTANIKTTIIADPQNNPYETAKQFASVSTRRPDDESQRLLGSFYDTHIYQT VDKNGNLIRTDYVQDFKHFAEGRENETYTTEQIPVDGYTLKKAVAANKANCNQDGSPATG NFTAQVTKAVTYYYTKQNDKGFFKAIHVYQTVDDDGNILSTDAIESGNLQSGYDNQQYTG DIKGRDGYTFTHVDDVDGITKKDQQVTGNFEIDKTKKATFYYQKVVQKGHFKEVHVYITK DKNTGKVTSIETVEGNEKSGLADEQYTTEKKDREGFTLTKVEGQGGHPKFDNEGKKTSAN YIVGERQVVQYTYEREVATGTFKETHIYITKDEDGKELARDVITTEPQRGNETEEYTTEK KDREGYTFVKTENPVGDPKYSEQGEPTKGNFVGDKDQAITYVYEKTVKKEVVPEPKKGTF KETHIYRVKYKDGKVISESTSEKIVTGTEKETYTTAKIDKEGFKFIEAKDPKENPSYSET GDSKTGNFKADKEQAITYVYEKEVERPAPNPEPKKGSFKETHIYRVVDEEGKTVSENSTE RIVSGNENTEYTTSKVDKEGFKFVKAQDPKENPSYSENGDSKTGKFVGDKTQEITYVYEK KVKKPAPKPEDKKGSFKETHIYRVKYKDGTIVSESSSERVVSGTEKEKYTTGKVLRDGFT FVKTQDPKEDPTYSQDGLSTQGNFKAEKDQAITYVYEKVIEKPAPEPEAKKGTFKEIHVY KVVDEDGKVISESSSERVVSGTEKETYTTEKKEKDDFKFVKTQDPKEDPTYSQQGNSKTG NFKAGKDQAITYVYEKKVKKEVPTEPQKGTFKEIHKYITKDYYGNVIGSNEVEKVFTGSE KEKYTTEKKEKDDFKFVEAKDPKENPSYSDKGDHTEGNFVKGKDQEITYVYERKVAPQPK RGTFKEIHIYIIKDEKGNIIDTNNTETMTIGNENEEYTTKKIDKKGYTFVKTQDPVENPS YSDKGDSTKGKFVGDKDQAITYVYEKTVKKEVVPEPKKGTFKETHIYRVVDEDGKVISES TSERVVSGTEKEEYTTGKVDKEGYTFKNTQDAKENPKYSDKGEPTKGKFVGDKTQAITYV YEKKVAKPAPAPEPKSGSFKEIHIYVTKDEDGNVVNTIQSENKVKGHDGDEYTTEKNEKD GFKFVKTQDPKDDPTYSTEGKSTTGKIVGNKDQSITYVYEKVVKKEKPTPKPEPKSGSFK EIHIYVTKDEDGNVVNTIQSENKVEGHDGDEYTTEKNEKDGFKFVKTQDPKDNPTYSTEG KSTTGKIVGNKDQSITYVYEKVVKKEKPTPCPVCPVCPTPKPQPKPEPQPEPQPEPQPEP QPEPQPEPKPEPQPEPQPEPQPEPQPKPEPKPQPKPQPKPEPKPEPKKLPQSGSSEEGYA LGMAMLGLSGLMTIVDIKRKNEK >gi|308166194|gb|AEHO01000005.1| GENE 4 14695 - 14889 298 64 aa, chain - ## HITS:1 COG:no KEGG:FMG_1333 NR:ns ## KEGG: FMG_1333 # Name: not_defined # Def: putative biofilm-associated surface protein # Organism: F.magna # Pathway: not_defined # 1 58 1 55 2577 63 55.0 2e-09 MNDKMQMHRLIEQKRIEGADKKPRYGMRKLTIGTVSCLLGFASLLAFTTPNFSQAAESGN TGGK >gi|308166194|gb|AEHO01000005.1| GENE 5 15485 - 15907 441 140 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0260 NR:ns ## KEGG: HMPREF0868_0260 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 137 1 138 148 158 61.0 7e-38 MSIFLTRNADIHHMVQKKFGKTDNYLVANKHNDVLKGLFKLLLSRLYYIFDGGRMFVLYF DNQGIHEKEISFTDNAPFLLIPWHEVRNFKVKDKRNKVYIDVDHLGKIYSYEIDFNGKLP QGNRERFMQLSEHNFYRDSL >gi|308166194|gb|AEHO01000005.1| GENE 6 15909 - 16133 345 74 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0259 NR:ns ## KEGG: HMPREF0868_0259 # Name: not_defined # Def: Xre family toxin-antitoxin system antitoxin protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 71 1 71 71 117 87.0 2e-25 MPELEVDNKICEYRKALGLSQHKLAKAVGLKRRSIMAYENKTISPTVETAYKICKVLGKD IKEVFIFKDIKEDQ >gi|308166194|gb|AEHO01000005.1| GENE 7 16303 - 18441 2737 712 aa, chain - ## HITS:1 COG:no KEGG:SERP1011 NR:ns ## KEGG: SERP1011 # Name: ebh # Def: cell wall associated fibronectin-binding protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 26 620 2590 3170 10203 168 28.0 8e-40 MVDSITDEQKNALAKVDDLLKLADTQGKTPDSVTKYNAEIAKIKDDLEKAKNAAKEIANK KEASKAEAETVLAQVATLNSKLVDAVAILKDQADMNELIAAKTALEKLTSEADPTTGKTK ASKDAYNQAKTAATQAETDAQTVINNANATPKEVAEALAKVNDKKAALEEAKTKLVDAMT DEQKSDLAKVEDDLKLPDTDKKTPNSVTAYNDAIKQFQAELETAKQEAKTVHDKGDDATK EEATAAQEKVAAVKEKLTKAVDLLKDKADKTALKKAKEDLAKLTKAADPTIGKTPASKSV YDQAKADATQAETAAQTIIDDENATPEAVADELAKVNKKKAALEEAKTKLVDAITADQKA ALAKVADDLKLADTKGKTSNSVKAYNTEIAKIQDELAKVKQTAKEIIDKKDEASKAEAET LLAKVATLNSKLVAAAGVLKDQAVKTELVAAKKKLESLIKEDPTKGKTTTTKTAYDNVKK TAEQLLTKAQNLIADDNATQDDVDAILENLLFKPDDLADAKTKLVDAITADQKAALAKVA DDLKLAETTGKTPDSVKAYNDAVEKIKAELEAVKQAAKAVQDKGDDATKAEATAVQDKIA AVKAKLTKAAELLQDQVSESHTDPVEIDTPTDLDNPTNIVQIVTKPTETKVNTTENNHGN GTITTVESKANKQNQAKLPNTGAKYSTATIMVAIAGILLGFGLAAGRRKEKE >gi|308166194|gb|AEHO01000005.1| GENE 8 18732 - 18953 136 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809821|ref|ZP_07703673.1| ## NR: gi|309809821|ref|ZP_07703673.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners SPIN 2503V10-D] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners SPIN 2503V10-D] # 1 63 542 604 614 101 100.0 1e-20 MTDEQKTDLAKAEETLKLPDLKEKTPASVAAYQAAIDKIKADLTAAKTTADEVINKKKML LRQKLLTLKLRLL >gi|308166194|gb|AEHO01000005.1| GENE 9 19075 - 20574 1875 499 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0951 NR:ns ## KEGG: HMPREF0868_0951 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain-containing protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 58 493 44 487 689 213 35.0 2e-53 MKNNKNHNLIERSNYEKITHYSIRKVSFGAASVAIAVAFMFLGGRSVSAAETNNAPTTNQ SAAANTKDEAANQVFNAPSKDANVTELNTKLQALPDKINNNTKINDMDQLGATTGVEAGK VKDITEFGGWTAINGGKFIIAKKSDKGVFPIETVNSVTGGNRNFVTYLNESTFDRKGNYM LFLGKVRTLINKEQQTVDGKPYKDNDNGADRNDGKGLVGYNGIEKTFKAYSPETGSKVNI EFKTGFTGDMNGHKANYKVEVIAKTADGKTEKIYEQTFDPSKSIDNDNMKVTPANIGGDA HFTTSRNISRDDITKKLEDPNLVDKLGKNSGTFTSKNITLKPGVVEYTTYISAANSKVLG MGYNTNWEHVALPISGIDFNIDQDTNILAKDLLKKIYNKLIATKDKDERGMTEESKKAYD DQLEAVKKILDATTLSETKDYKAETKTTLEKHKGLIVDKSGLEQNKKALDDFIANISTDG KTKDSKDAYDVKKKKQIRL >gi|308166194|gb|AEHO01000005.1| GENE 10 20800 - 21717 711 305 aa, chain - ## HITS:1 COG:RSc3292 KEGG:ns NR:ns ## COG: RSc3292 COG3274 # Protein_GI_number: 17548009 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 25 302 73 334 336 61 21.0 2e-09 MVSTYFRHDKWCLIFRQRNTNKKIYSKYILRLVIAFFTWNLFYAIVTQETSKHGIIYGLK THKEAIVSGHYHMWFVIMIIALYMCIPFCKKIVSDTLTTKYFLILSFVFSMMIPWIVQLL KDYVVGSNEQLVKFVGIVNSKLSVMSMNMMLGYSFYFVLGYYLDKIELNKKQRIIIYILG IIGLAFTILVDLNLALKTHKPCGNYYGNFRVNVLLEVVAVYTFFKYRKYKNWRLNKFVYL ISQYTLGIYLIHAFFIEKYASIFKFNTLSFNAIVSVPVVSVVVFVSAIIVSALLKYIPII KKYCV >gi|308166194|gb|AEHO01000005.1| GENE 11 22079 - 22681 654 200 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_11545 NR:ns ## KEGG: HMPREF0573_11545 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 1 200 1 200 200 264 65.0 2e-69 MANSRKFVAKTKDISLTVRRAESFSISYVDCKKDMFQIEENQDGIKFFQREKASACYWFG WLAKGNPEVIIMLPEDVDVCEIEAEVNQVLVTDIKADKIYVKVKNGKAAVRNVQANDVFI KCVNGKAVAHNVEATTSCTVDTLNGMSVLEGAITRDASIEVTCKNGIIEVSDKNKVNLGC RPDGCAHYVVRCLNGKAAVK >gi|308166194|gb|AEHO01000005.1| GENE 12 23221 - 23859 425 212 aa, chain - ## HITS:1 COG:no KEGG:Apre_0680 NR:ns ## KEGG: Apre_0680 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 209 69 277 278 310 85.0 3e-83 MDTTIKGIALEEDRIKEIVEEILDINVDDGIRFEIKDISYIREEDKYENFRISLIANVGK TQNPMKIDITTGDAITPREIEYAYPCIFSKKDIKIMAYPLETILAEKYETIIRRNITTTR MRDFYDLYTLYKLKKDDIDYEVLKEAVKRTSNRRGSQEMMKDYEKIIEDIKEDSYLRSLW DVYLKENKYIGDLSFDKVVDVVTILSNDTKLC >gi|308166194|gb|AEHO01000005.1| GENE 13 23747 - 24007 84 86 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSFISNLIPSSTLISKISSTISFILSSSRAIPLIVVSMSIVVLFSMPIKDDIKNPPFITK LFLYCDLDNLSNNLSKKVYLQNFLRL >gi|308166194|gb|AEHO01000005.1| GENE 14 24061 - 24648 185 195 aa, chain - ## HITS:1 COG:no KEGG:FMG_1423 NR:ns ## KEGG: FMG_1423 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 195 1 195 195 329 91.0 4e-89 MNTLKEYIKENVVITNKEAEKLGYTRYNLSGLTKSGQLERLRPGLYQLKGKVIDDFVLIS SNSNRIIFSHQTALYLHDLSDRTPSVFHISVPQGYNASHIKKRYEDIQVHYVKKDLYEIG KTEIKSPQGNLIPIYDIERTICDIIIDREKIDKQIFTDAIKRYFKSNNKNLRRLIKYSRL FKIEDEIRKYMEVLS >gi|308166194|gb|AEHO01000005.1| GENE 15 25085 - 25510 507 141 aa, chain - ## HITS:1 COG:DR1393 KEGG:ns NR:ns ## COG: DR1393 COG0406 # Protein_GI_number: 15806410 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Deinococcus radiodurans # 1 126 24 156 237 64 32.0 7e-11 MRHGADPVDRYGGWSEYGLTEVGRSQVNSAKHKLLGKGITGIYSSDLNRAKETAEIVADV LSLKITYLPQFREVNNGLLAGMKKVEAVEKYPGKYFRTLDWAETWPEGESPEQFFRRIKS AWYSFKKRLEAEMCYWSLMAE >gi|308166194|gb|AEHO01000005.1| GENE 16 25639 - 26145 220 168 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|50365462|ref|YP_053887.1| acetyltransferase of 30S ribosomal protein L7 [Mesoplasma florum L1] # 1 166 3 169 170 89 32 4e-17 MKLIRPNNQYIQGYIEANEEDEMFRPNAERRFNHPETIVESSYNLEHGINLPTNYVKSTT FWLIDNEKFIGEISIRHELNSFLINYGGHIGYEIRQSECMKGYGTKMLSMALKYCKETLN LHKVLITCDDDNIGSIKVIENNGGILENKVKNSLSRGNVITRRYWINL >gi|308166194|gb|AEHO01000005.1| GENE 17 26302 - 26973 454 223 aa, chain - ## HITS:1 COG:no KEGG:Fisuc_2495 NR:ns ## KEGG: Fisuc_2495 # Name: not_defined # Def: hypothetical protein # Organism: F.succinogenes # Pathway: not_defined # 9 216 7 212 218 199 43.0 7e-50 MSKIETLVDEGFRVSLIETAFFYGKFEIPHIDAPKDIVVPSGLVPFSRRQRSRDKQDFVC FYEHDVKFREILTHTEDYVEELKQYPGVISPDCSLYIDAPLCVQIASIYLNRAVGYYLSK QGICVIPNIRWGDERTYTDELFGEKIAFQGVDKHSIVSIGTYGQIRTAESKRYFREGLIA MLDELEPKVVLVYGAMPDTIFHGLETITEFVQYPDWTTRMKQK >gi|308166194|gb|AEHO01000005.1| GENE 18 26966 - 27298 385 110 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0167 NR:ns ## KEGG: HMPREF0868_0167 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 109 1 109 124 160 81.0 2e-38 MDVQKFKEVIRRRKETHDEYDYGVEMCNKEEIQILAEDIPSTIEYLKNDCTADEFVWISE IIDDLAEKTQNRELMECYKSLMGKFPEESKRYHVDFCIECAEDFLEDNDV >gi|308166194|gb|AEHO01000005.1| GENE 19 27298 - 27672 318 124 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0165 NR:ns ## KEGG: HMPREF0868_0165 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 124 28 151 151 172 81.0 3e-42 MDVQKFKEVLKRRDETHSEYTYGLEMCWKEEVEILSEDIPSTIEYLKNECTEDEFSWISE IIEDLAQKTKSRELVECYKSLMAKFPEESERYHVDFCIECAEDFLEDTVEDSDSNQQFKK RGKK >gi|308166194|gb|AEHO01000005.1| GENE 20 27672 - 28157 847 161 aa, chain - ## HITS:1 COG:no KEGG:Fisuc_2497 NR:ns ## KEGG: Fisuc_2497 # Name: not_defined # Def: hypothetical protein # Organism: F.succinogenes # Pathway: not_defined # 1 154 1 155 155 174 58.0 1e-42 MGTTKSGRVLNTRGAAGSASQFAVVHSNEGAYTKPQKDNHIRLKSGGHGQTGLKELDKYG IEYHIVKTYPNGVRVGYVPRHKDTKKKKGTNQAWFPAHWTTKDIKHAGEHVANLKGNKHV KDGVIVFGNWKGVRVGVIRTHGQIGTIFPDSNQPRKKRGKK >gi|308166194|gb|AEHO01000005.1| GENE 21 28400 - 28888 324 162 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0163 NR:ns ## KEGG: HMPREF0868_0163 # Name: not_defined # Def: toxin-antitoxin system, toxin component family protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 12 161 38 191 194 235 83.0 5e-61 MLITISNHFPWMKIALVPYSAFSDEAKKLLQKKSNHAFFVKESKENPPTIYYNDTFESKG AIRLSVFHEIGHYICEDEDDLADYFARHFMCPTAYLMLKGIESPNEIVAFCGVSFQTACN ASANIANRKKKLGNKLLSYEKEFIKNIDPITFGFYELTDRGR >gi|308166194|gb|AEHO01000005.1| GENE 22 28936 - 29226 400 96 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0162 NR:ns ## KEGG: HMPREF0868_0162 # Name: not_defined # Def: DNA-binding helix-turn-helix protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 96 30 135 135 147 82.0 2e-34 MNDRGINQKQLSQLSGITESSVSRYLRSDRRPRLDVVVNFAKAFGVATDYLLDDGEESEA SAYKTISTAIARKGGELTPEEKNELIALLLGSKADV >gi|308166194|gb|AEHO01000005.1| GENE 23 29524 - 30834 1040 436 aa, chain - ## HITS:1 COG:HP1165 KEGG:ns NR:ns ## COG: HP1165 COG0477 # Protein_GI_number: 15645779 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Helicobacter pylori 26695 # 33 420 2 372 386 145 32.0 1e-34 MFFTSKTFRSQKRCHAMHHGVSENNMHTLPTSLQRNIFVYYSVAAIYMLSISLPHAILTP LLIQKGLSFADIATIQVAFSIAVALCEIPSGILSDAFSRRTVYLWSKFLIIAFFLIIYFA HGLQAMTIAWFIYGISAALDSGTIGNEIILRVRDHCDHLGESSAKMVDTLVRLDTRIATI CMIISGFIGSFIYQQIGFSLYWFSLLGATICIVIIFICFPAKNIGTIPQGNSASITKIKH VFTEGVRELIDNKNVRIYFCALATTQIFFQSHFQFWQSFFLEIGMKQHYLGLLYVLFQSV SFVVSFVSMRGILARYKLASILPYVLCATLFCIILLLTSVNIYIKIFAYSIFVAIFWIIS NDINAQLRQNLTEKALSTLTSLASMMTRIASIIVLSILSVLLHLLPVHVVIPLMFAIAMI TTLTSYLYASYKNANC >gi|308166194|gb|AEHO01000005.1| GENE 24 31029 - 31328 452 99 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0424_0740 NR:ns ## KEGG: HMPREF0424_0740 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 1 99 1 99 99 173 93.0 2e-42 MDKNENINLPTKVTITLDLDKLYNELKENGWKPDRVAKYYKHYILKHISKEDTILGPDES VRYLIDLLTTISSRHFLSMIEPGPGKDALIKRVIYEYEK >gi|308166194|gb|AEHO01000005.1| GENE 25 31425 - 31898 404 157 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0739 NR:ns ## KEGG: HMPREF0424_0739 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 1 157 82 237 237 184 72.0 8e-46 MPYTFGFTEDDLNTNISTDIIDLKNYEENDELFDEEGNNLFNRISKQKNYKKAKIHSNNY NVDITTGNFHPHDALKGVIKETEIKQIMLVRNTYKNGSHYGVLYDNDCPKDEEKNFIILR DEANKLRYIPKKCIKLVKENEEPEKTLNDFLNAIGAE >gi|308166194|gb|AEHO01000005.1| GENE 26 32111 - 32584 504 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804456|ref|ZP_07698523.1| ## NR: gi|309804456|ref|ZP_07698523.1| hypothetical protein HMPREF9213_0967 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0967 [Lactobacillus iners LactinV 09V1-c] # 1 157 1 157 157 260 100.0 2e-68 MKHKSTVKRNGGGRIQMTEEHTIVSAAKGNRLQLIPLIAVLAGLGILVYRFWFNTSALYA PFYALMACGVVGALIQLLVAITTTCLYRRKVIAIVDATVIIITLLTIIFGEYIACNVLKL SVISYAWSPGTQINTVATILSGAVVTLLVFCEQRKIK >gi|308166194|gb|AEHO01000005.1| GENE 27 33344 - 34369 977 341 aa, chain - ## HITS:1 COG:CAC3407 KEGG:ns NR:ns ## COG: CAC3407 COG1073 # Protein_GI_number: 15896648 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 58 299 150 397 431 110 32.0 3e-24 MKKIFFSIFSIVIILVILVFSIRIYNDYKYKDINVLNFPKYYKDVTNISLYPTDIDGVDV TYVDEGRMQGFRFVPKKKSHKGLVICYGGSEGSPNFESAKRLAEEGYETFALFMFGMKNQ EPTLTKIPLEQFEDVINYINKNIKDNKPISVLGASKGAEYALNLACKYPEIDNLILISPS SYNFAGLDFKDYGSSWTYKGKQLPYIDTKKSSFSSFLKNIIVPTIIKSPISYKETYKSAI EQDPSSQEKLIPVKNVKANILMIVGEDDLMWDSFAMAQKIKEKNPNAKIYSYKGAGHIFA GNGVLNLGRIRIATGGTIEGNEKARSESRKTIATFLKENHK >gi|308166194|gb|AEHO01000005.1| GENE 28 34672 - 34908 274 78 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21053 NR:ns ## KEGG: HMPREF0421_21053 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 41 1 41 51 63 75.0 2e-09 MMFLKSLTADGQPWGELGFRKIRVKNYYIYFCVDESRKKFKYSRLFTREETRLSNWNNCN VTRCQASLKPFNDSFSYR >gi|308166194|gb|AEHO01000005.1| GENE 29 34880 - 35206 412 108 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21067 NR:ns ## KEGG: HMPREF0421_21067 # Name: not_defined # Def: toxin-antitoxin system # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 8 108 7 107 109 177 92.0 1e-43 MQHAYGGLIDMAVTKKANVNVRIQENIKQQAEQILETIGITRATAIDMFYRQIFLNKGIP FSLTIPKSLPAQDDMDEKTFNALMAKGYDQAAQSDSYPIDDVFEELDR >gi|308166194|gb|AEHO01000005.1| GENE 30 35269 - 36129 736 286 aa, chain - ## HITS:1 COG:CAC0528 KEGG:ns NR:ns ## COG: CAC0528 COG0488 # Protein_GI_number: 15893818 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 286 207 492 492 275 50.0 5e-74 MKDKFEISKNEKLRKDIKRLKEAARQSKIWSDKIENTKNGVKVSGIKPDKGRIGHQSAKM MKKSKNLEHRQNKAIEEKQSLLKDIEIKESLLLHPLHHHKNPLISVSELSAHYGERQILS NLSFEIEQGDIVAISGRNGSGKSTLIKILLGINHEYTGEIKLASNLKISYIPQDTSNLSG SLNEYIHSQDVDETLCKTILRKLDFARELFEMDMIDYSDGQKKKVLIALSLSKPAHLFIW DEPLNYIDVISRIQIEEIIKEAKPTLIFVEHDKRFVEDIANKIIQF >gi|308166194|gb|AEHO01000005.1| GENE 31 36219 - 36749 231 176 aa, chain - ## HITS:1 COG:CAC0528 KEGG:ns NR:ns ## COG: CAC0528 COG0488 # Protein_GI_number: 15893818 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 166 1 166 492 175 56.0 4e-44 MSAIKIQNLTFSYYGYVKPIFENVSFSFDTNWKTGLIGRNGIGKSTLFKLLLNQETYQGK ISKDVEFIKFPPNISDTSKLGIDLYKELISDDEEWKLFRELNLLNVDENLVYREFKTLSK GEQTKILLAILFTKEDGFLLIDEPTNHLDMNGRKILSEYLKSKKGFFSSFLMIEIF >gi|308166194|gb|AEHO01000005.1| GENE 32 36925 - 37119 287 64 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0396 NR:ns ## KEGG: HMPREF0868_0396 # Name: not_defined # Def: toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain-containing protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 62 1 62 62 108 95.0 8e-23 MTTAINIFLRTTIRENGIPFSLKLEAPNDTTIAAIEEGRRIASDPSVKGYRNMEDLKAAL DLGN >gi|308166194|gb|AEHO01000005.1| GENE 33 37100 - 37294 98 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLIAVVILSPSSEKILSACSLIYLSVLIFKFVVAIYGTSLLFYHTQILVYIQHVVITIHT ILVN >gi|308166194|gb|AEHO01000005.1| GENE 34 37609 - 37914 408 101 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0421_21051 NR:ns ## KEGG: HMPREF0421_21051 # Name: not_defined # Def: toxin-antitoxin system # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 100 1 100 101 166 86.0 2e-40 MANTNVVYARIDTTLKENAESILNQLGITPSSAIQMLYSQIVLQKGMPFELRLPVNKPIA LGSITRDELDKELQKGLDSLRSGKSYSADEVDLFFAKEYGA >gi|308166194|gb|AEHO01000005.1| GENE 35 37968 - 38297 296 109 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRQKSSLAPSHDFDHIVEFSLFVVDNIFDVSACIKDTNNRHATFIFIYEVKSCVVIYGNP AYSHRMPRLPLYKRMAHRHSVKRADSFSNATHLFFGCFRNLQSKTDILV >gi|308166194|gb|AEHO01000005.1| GENE 36 38503 - 39135 821 210 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21058 NR:ns ## KEGG: HMPREF0421_21058 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 210 1 210 210 379 96.0 1e-104 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY LLDKDNAIDLSIIKKPIDVAKYGLNAKLGVRKKIKIKEQIIRDEYADAEIIMLTVTKFIP NSSEKFMDNFIGWITTLFSDIPLFDTFAFGKAVESIGSEQYYLVNKKEKQFFVLITDEYI ISRMMRVKFTDKKMCVGDKEFTQVGKLRDK >gi|308166194|gb|AEHO01000005.1| GENE 37 39716 - 40012 387 98 aa, chain - ## HITS:1 COG:SPy0550 KEGG:ns NR:ns ## COG: SPy0550 COG3077 # Protein_GI_number: 15674648 # Func_class: L Replication, recombination and repair # Function: DNA-damage-inducible protein J # Organism: Streptococcus pyogenes M1 GAS # 1 58 8 65 104 59 44.0 1e-09 MAVTKTANVNVRIQENIKQQAEQILETIGIPRATAIDMFYRQIILNKGIPFSLTIPKSLL AQDDMNEKTFNALMAKGYDQAAQSDSYPIDDVFKELDC >gi|308166194|gb|AEHO01000005.1| GENE 38 40211 - 40822 813 203 aa, chain - ## HITS:1 COG:SP1625 KEGG:ns NR:ns ## COG: SP1625 COG4300 # Protein_GI_number: 15901461 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Streptococcus pneumoniae TIGR4 # 2 196 3 202 204 161 55.0 6e-40 METIVSALLVFVSTSIDYLVVLTILFASQGKKGLKSIYVGQYLGTGLLVLASLIAAYFLN FIPQDWIIGLLGLIPLGLGIRAIFVDEDIDEEDIEEKITGDGSKILAFTSLTVAMGGDNL GIYIPYFTGKSLIEISISLVIFALGILILCKLSQKLSSISAIGETVEKYEKVIVPVVFIG LGLYILIENGTINYFIGQVLKVV >gi|308166194|gb|AEHO01000005.1| GENE 39 41269 - 41448 147 59 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21066 NR:ns ## KEGG: HMPREF0421_21066 # Name: not_defined # Def: addiction module toxin RelE # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 10 59 58 107 107 81 80.0 1e-14 MMFLKSLTADGQPWGELGFRRIRVKNYYVYFCVDENKREVQILAVIYAIRDQATQLEQL >gi|308166194|gb|AEHO01000005.1| GENE 40 41420 - 41716 428 98 aa, chain - ## HITS:1 COG:SPy0550 KEGG:ns NR:ns ## COG: SPy0550 COG3077 # Protein_GI_number: 15674648 # Func_class: L Replication, recombination and repair # Function: DNA-damage-inducible protein J # Organism: Streptococcus pyogenes M1 GAS # 1 79 8 89 104 57 37.0 5e-09 MAVTKSANVNVRIQENIKQQAEQILETIGIPRATAIDMFYRQIILNKGIPFSLTIPKSLP AQDDMDEKTFNALMAKGYDQAAQSDSYPIDDVFKELDR >gi|308166194|gb|AEHO01000005.1| GENE 41 41846 - 42280 484 144 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21046 NR:ns ## KEGG: HMPREF0421_21046 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 144 24 167 167 258 88.0 7e-68 MRNKTIFCKTIFQSCLVMLLLLGSLFSLAGCTDDEEKAKLASYHWETVAVSREEFRIPEN YMNKDELYLFVSRDILDSHQDLSKVTLGDKHIKLVNSSFNLPGPGLKALFLVGKFDLKDK PGSAVLKVPGFKKKGNVAIGYKKK >gi|308166194|gb|AEHO01000005.1| GENE 42 42501 - 42680 56 59 aa, chain + ## HITS:1 COG:AF1793 KEGG:ns NR:ns ## COG: AF1793 COG1476 # Protein_GI_number: 11499382 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Archaeoglobus fulgidus # 12 59 18 65 70 62 64.0 3e-10 MDLQNEFIPTLELAEMVNVRRETIVHLENGRYNPSLKLAMDIAKIFKVKVEDLFEFTDE >gi|308166194|gb|AEHO01000005.1| GENE 43 42875 - 43051 87 58 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21071 NR:ns ## KEGG: HMPREF0421_21071 # Name: not_defined # Def: phage integrase family site-specific recombinase # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 12 58 81 127 127 64 91.0 1e-09 MIKYESDKWKIFLKSERHDISEYYEKLVRKYIKKIKVYEDKFSVTFKSEISVDIERAS >gi|308166194|gb|AEHO01000005.1| GENE 44 43250 - 43834 478 194 aa, chain - ## HITS:1 COG:no KEGG:Apre_1785 NR:ns ## KEGG: Apre_1785 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 2 177 1 176 176 299 96.0 4e-80 MVDELRKEIAIQQKKGLPFIMASVIIWLLIVLVSILDININMKNLLVFCCSCPLLPLAWL IGKLIKVDIFSKQNPLGQLGFIFTLNQMIYLLIVMWVFSAVPEKMIMVYAMVFGAHLFPY SWLYQSKGYTVAAISIPMISLILGCALNGTTVAVAACIIEIVFACVLHMELKKMGDDYNK SQFVELSKDQVSMK >gi|308166194|gb|AEHO01000005.1| GENE 45 43861 - 44022 60 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKRKQNDRPACIDRSSLPHCHPGFIFSPYGLAMIGATVIAFIELINYKIKAV >gi|308166194|gb|AEHO01000005.1| GENE 46 44000 - 44434 336 144 aa, chain - ## HITS:1 COG:SP2068 KEGG:ns NR:ns ## COG: SP2068 COG0295 # Protein_GI_number: 15901887 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Streptococcus pneumoniae TIGR4 # 1 140 1 140 144 181 60.0 4e-46 MDIWDTMYEKAKPQFHPEEVSPFVYAHHVVCAIEAENGEIFTGFCIESCSGVLNLCAERV AALNMYVNSGQTKVKHFIAFRDKAPYGAGSGMPCGACREFFYQLNEENEKMEIMEDFEQR KTVTLKELMPNWWGKDRYAEAKAK >gi|308166194|gb|AEHO01000005.1| GENE 47 44632 - 45117 612 161 aa, chain - ## HITS:1 COG:L24277 KEGG:ns NR:ns ## COG: L24277 COG0494 # Protein_GI_number: 15672204 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Lactococcus lactis # 46 159 1 119 119 96 45.0 2e-20 MEHNCGFINDKKAFRYRAAAIIVEEGCVLFAGNDEDDYYYSVGGAVHIGETSEEAVKREV FEETGLNYEVDHLAVIHENFFIGSSGLKGVDFHELTFYYMMKPMGKRDFTSQSTTESGAK ETMHWLPIDELDKCKAYPTFMKEYLKSEHIGVEHIVTDERD >gi|308166194|gb|AEHO01000005.1| GENE 48 45195 - 45350 80 51 aa, chain - ## HITS:1 COG:no KEGG:FMG_0970 NR:ns ## KEGG: FMG_0970 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 51 123 170 329 65 80.0 9e-10 MKDFIIENQDFIGSKELVQIAIQTNKNTNDIAKINDKISTLATKEDLKKAI >gi|308166194|gb|AEHO01000005.1| GENE 49 45510 - 45872 354 120 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804443|ref|ZP_07698510.1| ## NR: gi|309804443|ref|ZP_07698510.1| 30S ribosomal protein S18 domain protein [Lactobacillus iners LactinV 09V1-c] 30S ribosomal protein S18 domain protein [Lactobacillus iners LEAF 2052A-d] 30S ribosomal protein S18 domain protein [Lactobacillus iners UPII 60-B] 30S ribosomal protein S18 domain protein [Lactobacillus iners LactinV 09V1-c] 30S ribosomal protein S18 domain protein [Lactobacillus iners LEAF 2052A-d] 30S ribosomal protein S18 domain protein [Lactobacillus iners UPII 60-B] # 1 120 1 120 120 234 100.0 1e-60 MNSVIFCFEGANDVGKSTLLKKLSNNSLCQNFELGTTEKLQDYEWWFHNSSPYELIDEII GLVTKREKEICSFCESKVCLVDKGYMTLFSRLKATFLLRGIVPNELSKYMVMKLKTLIDR >gi|308166194|gb|AEHO01000005.1| GENE 50 45865 - 46272 534 135 aa, chain - ## HITS:1 COG:no KEGG:SSA_1628 NR:ns ## KEGG: SSA_1628 # Name: not_defined # Def: MutT/NUDIX family protein, putative # Organism: S.sanguinis # Pathway: not_defined # 1 123 1 126 139 79 34.0 5e-14 MRASMFVIDKTGDYVVIIKRYKDGREYYVVPGGKVVVGESVQHAAIREISEELDLNINES EIIGSLNGDDNVFFFAKTGYKQGGLSIHGEEKSRSNLDNVYQPIWIRISEISRLEIFPKF DKNRFSKIVGDKCNE >gi|308166194|gb|AEHO01000005.1| GENE 51 46427 - 46600 164 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804449|ref|ZP_07698516.1| ## NR: gi|309804449|ref|ZP_07698516.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0522_1143 [Lactobacillus iners UPII 143-D] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0522_1143 [Lactobacillus iners UPII 143-D] # 1 57 1 57 57 101 100.0 2e-20 MICSWVNLFRAVGLDALKPNQKGRKKKLDKHKIDIKAKETEEIIVDTSAEHVKEYYN Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:30:01 2011 Seq name: gi|308166143|gb|AEHO01000006.1| Lactobacillus iners LactinV 09V1-c contig00028, whole genome shotgun sequence Length of sequence - 51963 bp Number of predicted genes - 49, with homology - 48 Number of transcription units - 23, operones - 12 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 6856 6802 ## HMPREF0421_20949 hypothetical protein - Prom 6935 - 6994 11.5 2 1 Op 2 . - CDS 7016 - 7507 546 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 7603 - 7662 10.1 + Prom 7574 - 7633 5.8 3 2 Op 1 . + CDS 7658 - 8089 301 ## COG3279 Response regulator of the LytR/AlgR family 4 2 Op 2 . + CDS 8086 - 8532 416 ## LAR_1321 hypothetical protein + Term 8556 - 8604 11.5 + Prom 8609 - 8668 7.3 5 3 Op 1 6/0.000 + CDS 8716 - 9975 961 ## COG1457 Purine-cytosine permease and related proteins 6 3 Op 2 . + CDS 9987 - 11222 1587 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 11374 - 11418 6.0 - Term 11357 - 11405 6.3 7 4 Tu 1 . - CDS 11505 - 11720 181 ## gi|309804540|ref|ZP_07698606.1| hypothetical protein HMPREF9213_0765 - Prom 11868 - 11927 3.7 - Term 11891 - 11938 -0.4 8 5 Op 1 . - CDS 11952 - 12617 530 ## TDE0330 CRISPR-associated Csn2 family protein 9 5 Op 2 4/0.000 - CDS 12614 - 12820 217 ## COG3512 Uncharacterized protein conserved in bacteria - Prom 12943 - 13002 2.9 10 5 Op 3 5/0.000 - CDS 13016 - 13804 538 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 11 5 Op 4 . - CDS 13801 - 15144 1364 ## COG3513 Uncharacterized protein conserved in bacteria - Prom 15178 - 15237 2.9 12 6 Op 1 . - CDS 15246 - 15569 378 ## TDE0327 CRISPR-associated Cas5e family protein 13 6 Op 2 . - CDS 15541 - 16572 664 ## COG3513 Uncharacterized protein conserved in bacteria 14 6 Op 3 . - CDS 16611 - 17378 550 ## COG3513 Uncharacterized protein conserved in bacteria - Prom 17399 - 17458 6.9 15 7 Tu 1 . - CDS 17480 - 17908 532 ## COG3513 Uncharacterized protein conserved in bacteria - Prom 17950 - 18009 7.5 - Term 18116 - 18183 3.3 16 8 Tu 1 . - CDS 18193 - 18825 1012 ## COG0217 Uncharacterized conserved protein - Term 18939 - 18995 -0.8 17 9 Op 1 . - CDS 19206 - 19895 793 ## COG3177 Uncharacterized conserved protein 18 9 Op 2 . - CDS 19876 - 20016 129 ## - Prom 20134 - 20193 5.0 19 10 Tu 1 . - CDS 20499 - 20708 64 ## LJ1234 hypothetical protein + Prom 21025 - 21084 4.4 20 11 Tu 1 . + CDS 21106 - 21936 695 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 21937 - 21995 15.7 - Term 21925 - 21982 15.5 21 12 Op 1 . - CDS 21988 - 22338 392 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 22 12 Op 2 . - CDS 22338 - 22571 112 ## gi|315653321|ref|ZP_07906243.1| camphor resistance protein CrcB2 - Prom 22670 - 22729 6.5 - Term 22652 - 22693 -1.0 23 13 Tu 1 . - CDS 22751 - 24274 1295 ## LCRIS_01774 hypothetical protein - Prom 24308 - 24367 6.5 - Term 24311 - 24370 18.5 24 14 Op 1 5/0.000 - CDS 24381 - 26192 2107 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Prom 26258 - 26317 5.9 25 14 Op 2 6/0.000 - CDS 26384 - 27736 1530 ## COG1109 Phosphomannomutase 26 14 Op 3 7/0.000 - CDS 27760 - 28728 816 ## COG4856 Uncharacterized protein conserved in bacteria 27 14 Op 4 . - CDS 28725 - 29567 902 ## COG1624 Uncharacterized conserved protein 28 14 Op 5 25/0.000 - CDS 29606 - 30679 992 ## COG0687 Spermidine/putrescine-binding periplasmic protein 29 14 Op 6 36/0.000 - CDS 30676 - 31476 808 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 30 14 Op 7 30/0.000 - CDS 31473 - 32285 654 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 31 14 Op 8 3/0.000 - CDS 32272 - 33378 1307 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components - Term 33389 - 33429 2.4 32 14 Op 9 . - CDS 33433 - 34347 1058 ## COG0812 UDP-N-acetylmuramate dehydrogenase - Prom 34371 - 34430 6.7 + Prom 34372 - 34431 6.4 33 15 Tu 1 . + CDS 34461 - 34994 486 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 35034 - 35073 -0.1 - Term 35022 - 35061 1.3 34 16 Op 1 . - CDS 35072 - 35548 415 ## COG0802 Predicted ATPase or kinase 35 16 Op 2 . - CDS 35545 - 36525 991 ## COG0280 Phosphotransacetylase 36 16 Op 3 . - CDS 36576 - 37271 700 ## COG0692 Uracil DNA glycosylase - Prom 37291 - 37350 7.1 + Prom 37277 - 37336 5.6 37 17 Op 1 . + CDS 37359 - 38222 868 ## COG0561 Predicted hydrolases of the HAD superfamily 38 17 Op 2 . + CDS 38222 - 38737 450 ## LGAS_1299 hypothetical protein - Term 38401 - 38450 2.1 39 18 Tu 1 . - CDS 38542 - 38967 257 ## gi|259501460|ref|ZP_05744362.1| conserved hypothetical protein - Prom 39093 - 39152 3.7 - Term 39424 - 39468 7.2 40 19 Op 1 . - CDS 39473 - 40762 1685 ## COG1653 ABC-type sugar transport system, periplasmic component 41 19 Op 2 . - CDS 40801 - 42090 1631 ## LGAS_1639 metallo-beta-lactamase superfamily hydrolase 42 19 Op 3 38/0.000 - CDS 42074 - 42892 782 ## COG0395 ABC-type sugar transport system, permease component 43 19 Op 4 10/0.000 - CDS 42894 - 43757 627 ## COG1175 ABC-type sugar transport systems, permease components 44 19 Op 5 . - CDS 43757 - 44812 1368 ## COG3839 ABC-type sugar transport systems, ATPase components - Prom 44882 - 44941 9.8 + Prom 44895 - 44954 8.6 45 20 Tu 1 . + CDS 45014 - 46003 1001 ## COG1087 UDP-glucose 4-epimerase + Term 46009 - 46049 7.1 - Term 45988 - 46046 11.0 46 21 Op 1 2/0.000 - CDS 46061 - 46303 297 ## COG0282 Acetate kinase 47 21 Op 2 . - CDS 46377 - 47261 851 ## COG0282 Acetate kinase - Prom 47306 - 47365 7.3 - Term 47352 - 47412 8.2 48 22 Tu 1 . - CDS 47427 - 50021 2844 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 50192 - 50251 9.1 + Prom 50194 - 50253 8.9 49 23 Tu 1 . + CDS 50351 - 51724 1209 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 51741 - 51782 4.3 Predicted protein(s) >gi|308166143|gb|AEHO01000006.1| GENE 1 1 - 6856 6802 2285 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_20949 NR:ns ## KEGG: HMPREF0421_20949 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 135 890 80 879 2659 261 30.0 4e-67 MVGKNNELNKSRHIFEHINRYSIRKFKVGVASVAIAGCFVLPMGTNTVSATEVKTEDTVN KQENKKSATDTNDKETKQSVNTSTESLHKTPDHQDPKKKDQTSKEKDHQAVTSEIKDKKP EQKTKKDTQIDETSHSNKVPVNPNHLEAKDQSTANDQVTNEKSGKVYNLRFVYTLNDNVV SQLYQPYELTLTERELNKKDFVKYLEVPHLVGYRTYAGTYIKKDGKYVTATDLDEKKTHY IKIDAAYIKEHAKADSADKSGLHYKGIVNVPYTPEQKVYYVRHLVQKFDNPNEFEDVQLP DSVYKVTKTITENGQTKKVALTRNYGTVGTVAYAQPIFIPGYRPETNLLRSALPDSDQPV IFTLRYYRDSYEVKYDTDNGTSIRTKRVYYQQPVTEVKAPTRRGYVFQGWTVSGLSDSEH SDSKVNKDQKFTSIKSMPANGVTFKAHWKAKATAEYTVNVWAQKADPVDYAHPDNIVNYD FVGRVKRTVDTFAKNGDGSVDESKPTTIDEPSIKQEEIEKMAFPDTVESDRKTAAEFGKY YVLNDRFTKVMNHLMVDKKTGKTTLKFTKPDARHQSRAIIRPEGDTVLDLIYDRKPYDLI FAKGDVVAGVDTSTSGVDSGYNTPIVKPDAEGKWVTYWYDNTAQPDFDQNGDFQFDERNI VKMKPRTDGKPLYSPYVVRARYGASLQYRWPIESEVRMQRREGVDLDTHGDPTRGSDDAI GFLGFVLKNKAEKGKSEYAEYGAYRDTPPYRVTKSFLGGTDSLPNPHLTLYGKPLKSNWR LLTTDLTDLRTDRSKIEPQKVIIKLETDQSAKKNDDKDRHYVFSLESYSKNDTSNTDYIF NCPLIKGYQVVPEDAHQKAKHDDADDMNDDLDKIMEEDYEGYKKDHPDYDGSLEDYKLLV LSGNQRWQYEFYLRHHPEYLPELNPMAADYVAKHPGRHKNDFFNLLISGRLTGDKEQVQK AYEQLEAGFTRYKQLSEDINNYVKESYEQYKKDWVAKGGDDSDIEPEDPDDPDHLSSGSP VLELPEYKRWVLGNRKLLDKDHPLDEMYEDYKTKHPDFLGSPTDFTFLFEQHASPIYYTK YNSTDKLDDPLNMDAEPYEKNMLLVYRYKRCHYKLKFFGSRDADTALAEEDHPYSENIRN ASYNNEVKVVPLKANDPKHNLPYQWEFRGQTITRPTYLPEDYVFKGWALDAGGTQPLIPS GFTKEEQKNLTPIGMPEGGLALYPIWGPSEVKHKVTINYWGNKSYDMELVHDQILHEHEK PEGTDDPFLKDPPHQKGYAFTGWVIEVKGKDGKVQEHPYAFDNPVVEDMTLKAKYVPDVR VTATIHHYLLKPGETIKAYYDLFKQEQDLDKQITACTDANKVNELRATKSALTTQRMAMV DIDAVQTIDNLRPDAAYSAQAVYEGPQYFPDTQFDQITVNKDAKKNVAWFVYQVFGQNVY KVQYHDANGKEIKPPQTIRTGNLDWDVATAPQIKGYRFNKVSVPDKDKQKDDTHPQGQMT FEVTPEGKGVNKVYNVIFTYDDVRILKRKDQSQATPAGYQRIYYNTDGNGKLVTTDDKDK QPVANLTYDVVDGLQNGLLPDIKPQANPGYRFVRWDPAVPDTLASVKSRTYTAIFEPDIS TRKDNPYIISVGDPLPDAKELLAGAKNLPKDVKVAYVEGQGQLNGDFIVPNGAKVPDRTY VDRPVKLLINYDAVDDAGKTSHRTIKLDTTLTVVNPVVAQSRILSADLSDQDQKNSGIDK HTLAVDRYIRTHYKLVTFDAKQNGDFASPDVERSYYVKPDAEVTIPRPGVIAKAGYDFSG WKQGNTSYSKVVKGKFSDKTTIVADYRAHAMTLKPMILSVGDQAPEAKALVTNSDKLSDA AKFSYSGSAPTTQKAGKQQVTVVNTDGVQESTTIQVIDNIVSNNQFQGLSEAEKAYIKSH YKRIAFSAGQHGQFDPKDETIYYVNPDRVHDLSKLAPHVTAKMGYKQGNGLANTGFSCKL KDVRFDYDTDIAATYQEVDPTTKHLIIRQGMSLPKASEFIESLPQGTDVAYNFESESAKK YAQDEVGHTKVIPLTLTYKQADKITRTAHCVAYLTVLPSVIAQGSETAPDYVDYIKKNYH TITFDAGKDGQLNGATTYFVDPDREVDLTSIQPVVTANTGQQFSGWNKNLKGKFTQNTTF EATYRQAPKPEPCPVCPIPKPEPKKGTFKEIHIYVTRDEDGKIVNTIQSENKVNGYDGDE YTTEKNEKDGFEFKEIKDLQDNPTYSTDGKSTTGKIVGDKNQSITYVYEKLLRMNNQLQL QRQFQ >gi|308166143|gb|AEHO01000006.1| GENE 2 7016 - 7507 546 163 aa, chain - ## HITS:1 COG:CAC2751 KEGG:ns NR:ns ## COG: CAC2751 COG0454 # Protein_GI_number: 15896008 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 2 159 1 164 167 97 34.0 7e-21 MLKIRNAVKEDVPRIMEIYCYAQEFMIKCGNPTQWGHSYPTRELIDCDILNQACKVVYDE TGIHGVVALYEGIDPTYVHIEEGSWLNNDPYITIHRIASDGRVHGVFKIVADYCKNMIDN VKLDTHANNLIMQSLIAKNGFTRCGIIHVDDGSPRIAYQWSKK >gi|308166143|gb|AEHO01000006.1| GENE 3 7658 - 8089 301 143 aa, chain + ## HITS:1 COG:SA2153 KEGG:ns NR:ns ## COG: SA2153 COG3279 # Protein_GI_number: 15927943 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 1 143 2 147 147 58 27.0 3e-09 MKINLHVDASISEEHAEIWVKQMKPNLESMLQYLNNNQVLWCYYDDQLKPISLNDIFIIQ TDDRKLDISTQNRHYSCRKPLKEVKAILNNDFIEASRSAYFNFKHIDHLVLLNDGAIDVV LTNQERIAISRRKIKNLKERLGL >gi|308166143|gb|AEHO01000006.1| GENE 4 8086 - 8532 416 148 aa, chain + ## HITS:1 COG:no KEGG:LAR_1321 NR:ns ## KEGG: LAR_1321 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 148 1 148 148 128 47.0 9e-29 MKKYILSAIKGMFLGIAIGLCISLFFDYLNGADTYLPSTPVFTSHFARPLNAVTFSVVLW ALMGLVFSIGALIFQIERWTLLKRTIVNFFVYYIFFTPLAFMAHWFIIDLPHILVFTIMF TLIYVLIWFINAQLIKNDIKQINEKLRK >gi|308166143|gb|AEHO01000006.1| GENE 5 8716 - 9975 961 419 aa, chain + ## HITS:1 COG:PA0438 KEGG:ns NR:ns ## COG: PA0438 COG1457 # Protein_GI_number: 15595635 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Pseudomonas aeruginosa # 20 412 4 398 416 315 47.0 9e-86 MKNYFGKISQPDQSRTNEIDQEYAHSRVKGNRKNFWQMLVIMVGFTYFSPSMTAGGHLGL GLNLSQFIIAVILGNLFLAIYTGCLAYIGQHTGMNLDLLARQTFGNKGAHLASFVIGITQ TGWFGVGVAMFAIPVAAFYHLNVYLLVLIMGFLMTLTSVKGIKALSIFGIIAVPLITVLG FYSVYLSFHTSGSLQNMFSNHPLKPLSMAMALSIVIGNFISGGTSTPNFTRFSKNSIGAI SATVIAFFVGNIFMFIFGATGAAAFGKADIFDTLIMQGLAIPAILSLGLNIWSTNNNALY ASGISLANITNNSMKLMTMIAGTIGTLLSIFLFEHFTTYLSLLSSLIPPIGSIIVVDYFM HRSNYKTEECQINYNLSALCPIFIGAFVGCVIKIGIPPINSLIAAIISYLLLQYIKINK >gi|308166143|gb|AEHO01000006.1| GENE 6 9987 - 11222 1587 411 aa, chain + ## HITS:1 COG:STM3334 KEGG:ns NR:ns ## COG: STM3334 COG0402 # Protein_GI_number: 16766629 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Salmonella typhimurium LT2 # 17 406 22 411 426 491 58.0 1e-138 MLLKNAYIENATKSQDIRIEKETFTAIADHLKPLPNEEVIDLNYKLVLPPFIEPHVHLDS ALTAGQPKWNESGTLFEGIETWALRKKDLTVEDVKYRAIQAIKKQASNGIQFVRSHVDST DPNLTAMRALLEVREELKGTIELQICAFPQEGILSFPNGATLLEECLKMGADVIGGIPHY EFTREYSVQSLHKIIDLALKYNVLVDVHCDEIDDDQSRSLETLACLALESGLKQKVTASH TTAMHSYNNAYVQKLFRLLRLADINFIANPLVNTHLQGRIDTYPKRRGMTRVKELLANGN NVAMGHDDIFDPWYPLGDGNCLDVIHMGLHVGHMMGYKEIMNSYRFSTYNAARVLNISDR YGIEVGKPANLIVLNGKNFYQVLNEHSEVLYSIHKGRVIAKTIPKKKEILF >gi|308166143|gb|AEHO01000006.1| GENE 7 11505 - 11720 181 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804540|ref|ZP_07698606.1| ## NR: gi|309804540|ref|ZP_07698606.1| hypothetical protein HMPREF9213_0765 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0765 [Lactobacillus iners LactinV 09V1-c] # 1 71 1 71 71 88 100.0 2e-16 MMTFESYVIYALGKTVFSFSSGSGVFESYVIYALGKTSIKIFNYSVMFESYVIYAPGKTK NIFSFIYIEFK >gi|308166143|gb|AEHO01000006.1| GENE 8 11952 - 12617 530 221 aa, chain - ## HITS:1 COG:no KEGG:TDE0330 NR:ns ## KEGG: TDE0330 # Name: not_defined # Def: CRISPR-associated Csn2 family protein # Organism: T.denticola # Pathway: not_defined # 1 221 1 223 224 89 29.0 7e-17 MKLLSNDLEKTFSLNQHVLNTLVIEDNTFFREFISKIVHFVENDSNELEIMDEDEEISPT KCEIIVDIFRANPNNTKILTKLYSNLISGLSSDERYQDSINFESQLYSFMDKIAFDCDYH LTYGDIDYKSIFKALNLSIDTDIKGLMSNFVSYLDLSYKLLGKKIYFAVNLNTFFSQKDM GVLNDYLRYNNIVLVCLDNSLKRTLFEDENIRIIDQDLSEI >gi|308166143|gb|AEHO01000006.1| GENE 9 12614 - 12820 217 68 aa, chain - ## HITS:1 COG:SPy1048 KEGG:ns NR:ns ## COG: SPy1048 COG3512 # Protein_GI_number: 15675043 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 68 39 106 113 59 45.0 2e-09 MIQESVYTKITKNMSSAGAINKKLRAHVPTKGLIQLLTITEKQFSRMEYLTGDEKSIYIT DDRRLIIL >gi|308166143|gb|AEHO01000006.1| GENE 10 13016 - 13804 538 262 aa, chain - ## HITS:1 COG:SPy1047 KEGG:ns NR:ns ## COG: SPy1047 COG1518 # Protein_GI_number: 15675042 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 3 242 4 243 289 170 37.0 3e-42 MTWRIVVISKRSKLYLKMGYLMVRDFENKVNGIFLQDISHLIIATTEASITVSLMNELQK NKIKLIICDEKGNPAAEMLPYYNSYNTNEKIKAQILWKNNTKADIWQYIVKEKIRKQMLL LHAKNFEKASLLAEYIKEVQPLDSTNRESHAAKVYFNALFGMDFSRNDDSNANACLNYGY SIILSAVNRSIVAMGYLTQLGIFHDNMFNQFNLSCDLMEPWRILVDKEVCDMNYHVFDKK QKMQLINLLNKKVIDRWKNTIC >gi|308166143|gb|AEHO01000006.1| GENE 11 13801 - 15144 1364 447 aa, chain - ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 247 889 1158 1334 80 29.0 6e-15 MLYDHKLIGDKKYARLIRSKAFTDDELAGFIARQLVETRQATKETADLLKRLCPKSRIVY AKAQNASIFRQKFDIPKSRTINDLHHAQDAYLNIVVGNIFDTKFTQDPRNFIKNTKDSRN YNLEKIYDYNVERNNYVAWIAPDSKTNGTIANVKCNLSTKDFRVTRPSFYKKGALFNQNL SRKGSNLAPIKEHSPKSNPLKYGGYSGKNNSFFVVVAGKDNKGKDIVKLIPVNTLIYNKM LHCDYKAKQELLTSYVANNFAINNFRIVKDDIKMYSLVKIDGAYYYLVGGTDERIEVKNA MQLLLSKDSIKAVKILEKESKDQFANIKNYKDIDIKLGRTFNEVISKYTNSVFGKSMLIS DKYRKDIFKSVDKSILEFNSLNTIAKADNLLKFVTSMRPAGSVDALKMVGLIERIRKSNV ISNFNEFKLINQSVTGLFENEEDLLKL >gi|308166143|gb|AEHO01000006.1| GENE 12 15246 - 15569 378 107 aa, chain - ## HITS:1 COG:no KEGG:TDE0327 NR:ns ## KEGG: TDE0327 # Name: not_defined # Def: CRISPR-associated Cas5e family protein # Organism: T.denticola # Pathway: not_defined # 1 97 791 885 1395 70 41.0 3e-11 MARSKEDHPKRKLSRKADLKQVYKDSKKQIISIIGKDKYQDLSNELDNKDDRDLRWDNLY LYYTQLGRSMYSLKPIDISELMNKNLYDQDHIFPKSKNMMILLKIEF >gi|308166143|gb|AEHO01000006.1| GENE 13 15541 - 16572 664 343 aa, chain - ## HITS:1 COG:SPy1046 KEGG:ns NR:ns ## COG: SPy1046 COG3513 # Protein_GI_number: 15675041 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 13 331 437 759 1368 137 33.0 4e-32 MLAKDDQEGITVKDKIISLLTFRLPYYIGPVNPAVHGKFAWVKRLANGKVTPWNYKEKID IDASHEEFIKTKLSKCSFLIGCDVLPKNSLLYQKYMVLSELNTIKFNGVNISEKLKDDIY QNLFKNIQKVTKKRLQNYIKEHENIIGDVIVTGIDNAFKQGLVSYLKFKKIIGDKIDDDR YQKVLEKIIRDITLYDECAGKKIKKEYKDSDLFTEDELNKIVKLTFNDWGRLSAELLDQL EGEDTVSGETGKIIEFMQKHNYNLMQLMSKKFTFKYKIDEINKSYYQHDKFNYKSMIDSL YVSPATKRILWQSLKVVHEISKIMKHDPEKIFYRNGTFQRRSS >gi|308166143|gb|AEHO01000006.1| GENE 14 16611 - 17378 550 255 aa, chain - ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 78 255 269 424 1334 69 30.0 5e-12 MITYLKDNDDITLSFPKDQLINIFKNSNLNSTEKSDQLKPFFGRTNLEKGIIKLLSGGKQ DLSNMFRDETLKNSNYKNLKFSDNTFDDERDGYAADLGDRINLLILLKQIYDASILESMM SQARVSIDGHKYISSAKVCAYEKHKSDLKRLKSLIKKYLPSEYNNIFRKITEKDNYVAYS KSNITNNKREKALKYVEYVDFTKYLTKKLKTIKTQDAEDDKEIFEIKGELEKQSFLPKQR TLDNSIIPYQLHLME >gi|308166143|gb|AEHO01000006.1| GENE 15 17480 - 17908 532 142 aa, chain - ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 139 1 149 1334 78 39.0 5e-15 MNNNYYLGLDLGTNSVGWAVTDDHYNIIKFHGKHMWGMRLFEEAETAKDRRLHRQARRRR QRLVERINLLEELFDKEISKVDQGFFARKKESDLHFEDKTTKSEYALFNDKSYTDRDYYK QYPTIFHLIMDLIENDKKGIYV >gi|308166143|gb|AEHO01000006.1| GENE 16 18193 - 18825 1012 210 aa, chain - ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 205 35 238 241 231 59.0 6e-61 MAAKSGGPDPSGNPSLRLVMDKARAANMPKSNIERAIKKAEGNSDEHYDEITYEGYAPGG VAVLVEALTDNKNRTASAVRVAFTRNGGTMGATGSVAYMFDRKGYIVIDRSTTDADEDQV LMDVMDAGGDDLQASDDAFEIYTDPKAFTGVRDALEKAGYKLADAELTMVPQNTTAVPAE KKEQFERLIDALEDDDDVSNVYTAAADEDE >gi|308166143|gb|AEHO01000006.1| GENE 17 19206 - 19895 793 229 aa, chain - ## HITS:1 COG:mlr2757 KEGG:ns NR:ns ## COG: mlr2757 COG3177 # Protein_GI_number: 13472455 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 3 219 8 218 263 129 36.0 3e-30 MKFTKLNGLKVQMSKYRPLDQDQLKALEKEIRVEHVWSSNAIEGSKISKFETEAIIERGM TIHGESIGDVLSTIDLNEAYDYMLDLASRKKPLTQTIIRDLNRLSLAKTHPEWGGEYRTL EVHPAKIDYNPYAEPFDIRPDMDALITWANSAQNNLHPVQYAADLHYKFVTIHPFRDGNG RTARLLMNLALTEAGFPVVNIMPDKESRNEYMDILLDSQIKKILQNSKI >gi|308166143|gb|AEHO01000006.1| GENE 18 19876 - 20016 129 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFKSNNYSIGAISRKVGISRQQIYRVKKREELAKTQEETKNEIYKA >gi|308166143|gb|AEHO01000006.1| GENE 19 20499 - 20708 64 69 aa, chain - ## HITS:1 COG:no KEGG:LJ1234 NR:ns ## KEGG: LJ1234 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 69 30 98 98 86 69.0 4e-16 MLLLYGEVNELFQAWLKDDDQNIGEELADVAIFLLGIAEILDKDLGVEIIEKMKVNKNRI YRNGKKVNG >gi|308166143|gb|AEHO01000006.1| GENE 20 21106 - 21936 695 276 aa, chain + ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 20 263 32 283 302 105 25.0 9e-23 MIILLCTACTKENKSNSKISIVSSTNVYADIAKNIVGKYGISSAIIKSSSVDPHDFEPKT SDAKDLKHADIIIANGMDYDGWMKKLAKANGKKITRVGEDLMHLKTDANPHIWYNLKMPQ AYVKYLVKRLSTLDKKHSAYYKNNAQKYLKKIAKIQKIANNIKAVKKPVLVSEPVFDYAL IAAGYKIGNPEFEEAVEKETDPSPKIIKHMNKMIATKKIAFFVNNTQVNSATINSFIKKA KANKIPILKVRETIPNDTTYFDWMLTNYQNLAKISK >gi|308166143|gb|AEHO01000006.1| GENE 21 21988 - 22338 392 116 aa, chain - ## HITS:1 COG:SP1294 KEGG:ns NR:ns ## COG: SP1294 COG0239 # Protein_GI_number: 15901154 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Streptococcus pneumoniae TIGR4 # 13 114 13 109 109 62 47.0 2e-10 MAWLMVLIGGICGALVRYKINIYTSNFYLGTFPLATLCVNLAGSFLMGILFAKVCAGCSY ALLGTGFLGGLTTFSTMNFELLDALRNKQYLIFISYFVLTYLGGFTLLLIGYILAK >gi|308166143|gb|AEHO01000006.1| GENE 22 22338 - 22571 112 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653321|ref|ZP_07906243.1| ## NR: gi|315653321|ref|ZP_07906243.1| camphor resistance protein CrcB2 [Lactobacillus iners ATCC 55195] camphor resistance protein CrcB2 [Lactobacillus iners ATCC 55195] # 1 77 56 132 132 125 98.0 9e-28 MKDYNYSNLSLAKGLTVGFIGSFTTFSSYNLEIFKLINNKQYLAGLTYFVLFAALGLFFT WIGMLLEKLVVKVGKNR >gi|308166143|gb|AEHO01000006.1| GENE 23 22751 - 24274 1295 507 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01774 NR:ns ## KEGG: LCRIS_01774 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 19 500 12 494 502 286 36.0 2e-75 MLQENSKKNQFFIRLLQCFILIQPLLDTYFFYANSKLKKLFVFSIPTLLRFGLIALIVFL FWKFSISESRSRYFKYICVYALILLFYSVGHLWYFSTFPAISKVMIIKEAFYIVRMLLPV IMIYIIYHTEFSIQQFMVVIQGLVALISGSIVISNLICKSMCSYDNHKLIVANIFSWFSR SDFTFREIASKGWFYFANTISAILVLLVPLIIYLLLTRFNFINSILYIITGMAMIMLGTR VGTLGFVAINILSILVYLVHIFILRNAKFSIKPLILIAIFVGAYCATIPYSPMSRRNQST ETVAKKSTKHHTKRLIKKLDKALSQKETKAEKKEYIIAFVKKYHNRFNIPKKYIKYSIPV ENNYQFWNKIYHWPSIKRMDNRLLEETMVKEYMSQKSVGFVKIFGISYLAMTQLFHLERD FVSQKDSMGFIGMILLVGIYPIMIVYSIYKWLRYSQLRTMLNSFLIMANGLLILVAYNSG NVMDFLTASLIASFTFGFMLLQQKKVK >gi|308166143|gb|AEHO01000006.1| GENE 24 24381 - 26192 2107 603 aa, chain - ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 603 1 602 602 688 58.0 0 MCGIVGIIGKSARDVVLNGLKKLEYRGYDSAGIYLNDLNGHEYLTKAVGRIKNLEDKLSD NEQGLVGIGHTRWATHGKPSIANSHPHYSSDKRFYLVHNGVIENYAELKEKYLSDVSFNS DTDTEVVVQLIAKIAKEKCLSGFLAFKEALKLINGSYAFLLVDNKEPDHIFIAKNKSPMM LGIGDGFNIIASDAISVLDQTKLFIDLQDGDVADVTASAINIEDIAGNHIERKPYLVNID PNSASKGTYEFYMLKEIDEQPSVMRRLSKEYFNDDADVKVDANIVQSVAQSDRIYILAAG TSYHAGLVGKNIIEKYTDIPVEVGIASEFGYHFPKLSKKPFFIFLSQSGETADSRVVLKQ VNQLGLPSLTITNVAGSTLSREATYTMLLKAGPEIAVASTKAYTAQVAVQAILAKAVGEY LKIAAAIDFDLKRQLALVAEGMQEIVDGKEKINSLAKKYLATTRNAFYIGRGVDYAVALE GALKLKEVSYIQTEGFAAAELKHGTIALIEKGVPVVTLINDPATADLTRGNIQEVESRGA NVITIVAKKFAKATDDIILPDVDYYLSPLVTVVPAQLLAYYASKNKGLDVDKPRNLAKSV TVE >gi|308166143|gb|AEHO01000006.1| GENE 25 26384 - 27736 1530 450 aa, chain - ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 1 450 1 447 448 528 60.0 1e-150 MLKYFGTDGVRGVANAGLTPEMAFKLGRDGGYILTKHKSAGERARVLVSRDTRISGQMLE YALISGLLSVGIEVLELGVITTPGLSYLVRAQGADAGVQISASHNPVEDNGIKFFGSDGL KLSDEKEAEIEALIDSKEDTLPRPSAQGLGTVTSYHEGSSKYLQFIENTLPEQLDGIKVV VDGANGASSALISRLFADMGVDFTTIATHPDGLNINDHVGATHTELLQQEVVKQGAQLGL AFDGDADRCIAVDEKGNEVDGDHIMYVIGCYLADHGRLKNDTIVTTVMSNLGFTKALERR GIKNIRTQVGDRYVSEEMRANGYNLGGEQSGHVIISDYHNTGDGMLTGLHLLYVMKDTGK SLSELLSDFKSYPQKLVNVPVRNKQDWKKSTKISAAIAEVEKTLGDDGRIFVRPSGTQEL IRVMTEAPTQELADKCCQDVVDVVKAEMGI >gi|308166143|gb|AEHO01000006.1| GENE 26 27760 - 28728 816 322 aa, chain - ## HITS:1 COG:BS_ybbR KEGG:ns NR:ns ## COG: BS_ybbR COG4856 # Protein_GI_number: 16077244 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 314 1 318 483 118 28.0 2e-26 MNKFFDSKLFYKLLALIITILLTVYVSYNQVGFIPRGQRTRTLQTVTKTETLKLPLQISV NTDKYYVTGYPEKVKVNITGPSALVVSAINTKNFRAFIDLSELKIGKHQVPIRVSGLSNQ LSYKISPKKIVVDIQERKTRTLPIKIRYNSDVLSKEYFVYAPYCKPSMVEVTGEKSEVNH ISKIIANVDIRKKTIHSFDSEVMLVAVDASGKQLNVVIQPETTHVYIPIRKSKKRVRLNI TSHNAASNRMYSLTSSIKKVTLYGAASTLKDIVQLDVDVNLAGIVHNTSKKVRLKLPKGV VKADPSDIWVKIEMADISAIKN >gi|308166143|gb|AEHO01000006.1| GENE 27 28725 - 29567 902 280 aa, chain - ## HITS:1 COG:lin2225 KEGG:ns NR:ns ## COG: lin2225 COG1624 # Protein_GI_number: 16801290 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 278 2 272 273 283 53.0 2e-76 MVWDIYHIFTWQHLMNLIDILIVWFLIYRLIMIIKGTKAVQLAKGIALIIVIRLVAGFLH VVILSYLVDQILSWSVIGMIIIFQPEIRRGLEHLGRSPLLGGNVVAKKSSEIMIEELDKA IQYMSKRRIGALITLQQKTGLEDYIETGIPINATITGALLINIFIPNTPLHDGAVIIKDN KVSVAAAYLPLSDNNTIPKNLGTRHRAAVGISEVTDAITIVVSEETGGVTITRNSNLMLD LTREEYLKYLRAQLVPETDDQPTDFQRMISKIWNWGSSIR >gi|308166143|gb|AEHO01000006.1| GENE 28 29606 - 30679 992 357 aa, chain - ## HITS:1 COG:SP1386 KEGG:ns NR:ns ## COG: SP1386 COG0687 # Protein_GI_number: 15901240 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Streptococcus pneumoniae TIGR4 # 1 355 1 354 356 397 56.0 1e-110 MKKLVLAAITIILVCLGLQILADKLNNSGVSSGSKDLIIYNWGDYIDPKLLKKFEKQTGY HVIYETFDSNESMYTKIKQGGTAYDICIPSDYMVSKMKESHLLKKINLRKISNIKNIDPQ FMNQSFDYGNNYSIPYFWGTLGIIYNDKFVKMGEIKHWNDLWKSKFKHQILLVDSARDIM GLSLISMKNSVNSQDSLKLKLAKTKLDALGANVKAIIADELKMYMIRNEASIGVTWSGEA RTMLNENPHLHYVVPSEGSNLWLDNIVIPKTAKNQAGAYAFINFMLDPKNAAQNAKYIGY ATPNMLAKKLLPDSIKKDRQFYPATSTMKHLQVFKNLRSEKIQEYNDLFLEFKMYAH >gi|308166143|gb|AEHO01000006.1| GENE 29 30676 - 31476 808 266 aa, chain - ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 1 264 1 264 268 279 61.0 4e-75 MKKFKWDKFYLTFILLTLYIPIFYLIIYSFSSGNNMDNFKNFTFDHYWDLINDNRLLAIF IETIILALLSSLFATIVGTLGAIAINNIKNRNRKKLLLTLNNVLMVSPDVIIGASFLILF TAMGISLGMGSVLLSHIAFSIPIVVLMVLPRLKEFDKSLVDAASDLGANSWQIFSKILLP AITPGILSGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGINLEINALSTVMFI FVLILVFIYYLITCKKGHTKGRAGTL >gi|308166143|gb|AEHO01000006.1| GENE 30 31473 - 32285 654 270 aa, chain - ## HITS:1 COG:SPy1103 KEGG:ns NR:ns ## COG: SPy1103 COG1176 # Protein_GI_number: 15675086 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Streptococcus pyogenes M1 GAS # 1 263 1 264 264 283 60.0 2e-76 MKKNKLLFLIPYSLWIILFVIAPLVMITLNAFSSKYGLTINNFKQFFINGTFLRMTLNSF WYAFLITFITLLLSYPTAYILSRMKNQQFWLLLIILPTWINLLLKAYAFIGIFGKHGLLN NFLGLVGISPVNILFTNFAFVVVAAYIEIPFMVLPIYNAICDIDPAVVKAAKDLGASNFQ TFIRILWPLSKSGVEAGVQAVFIPSLSLFMLTRLIGGNRVITLGTAIEEYFMSTMNWPMG STIGVILIILMIAVMISTSSDSKKKKEVKL >gi|308166143|gb|AEHO01000006.1| GENE 31 32272 - 33378 1307 368 aa, chain - ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 4 360 5 361 364 454 63.0 1e-127 MSNIIRLEHVRKEYDDGFVALDDVNLSIESGKFYSLVGPSGSGKTTILRIIAGFSEVSAG KVFFDNQDITHLDAAKRQINTVFQNYALFPHMNVFENVAFGLKIKKKEKSEIIRSVKAAL HMVQLDDFVNREISELSGGQQQRVAIARALVNKPQVLLLDESLSALDKRLRKDMQFELRE IQKKLGITFIFVTHDQEEALAMSDEIFVLNQGTIQQSGTPVDIYDEPVNDFVARFIGDSN ILNGRMIEDYLVEFNNRRFECADAGIKPGEKVEVVLRPEDLDIVEVADGKLSATVESQLF LGDHFEIKATDTDNNEWLIHSTNASKIGKEIGLYFDPEDIHVMRFGESEAEFDKRLESYE GEDDDEEK >gi|308166143|gb|AEHO01000006.1| GENE 32 33433 - 34347 1058 304 aa, chain - ## HITS:1 COG:SPy1101 KEGG:ns NR:ns ## COG: SPy1101 COG0812 # Protein_GI_number: 15675084 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 4 298 1 293 295 317 54.0 2e-86 MNLMTLRQQGIDIQQNIPLSRFTFTKTGGPAEFLAFPKNLPELELLVKSVRQENMQLTVI GNASNLIIKDGGIDGLVIILTKMNQIIANESDCTISAQAGATIINTSNAARDAGLTGLEF AAGIPGSVGGAVFMNAGAYDGETENVIKSVKVLTRDGVFKTYTHDEMQFGYRHSIVQDTG DIVVSATFGLKAGEKKAIADRMKYLNDLRRAKQPLEYPSCGSVFKRPKGHFVGPMIIEAG LQGTRIGGAEDSKKHAGFIINVGGATATDYLNLIHLIQKVIKEKFDVDLQTEVRIIGKEK RIDD >gi|308166143|gb|AEHO01000006.1| GENE 33 34461 - 34994 486 177 aa, chain + ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 177 1 176 306 122 38.0 4e-28 MNFTAMDFETANRHYDSACSLALVLVRDNKIIDSFYTVINPQMPFDKNNIKIHGITANDV KDAPTMDEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTLATSRA LMPNLKNYRLDTVSNQLNIDLWHHHNALSDSEACAEILIKQNQQFGDEQIKNFIKYI >gi|308166143|gb|AEHO01000006.1| GENE 34 35072 - 35548 415 158 aa, chain - ## HITS:1 COG:lin2184 KEGG:ns NR:ns ## COG: lin2184 COG0802 # Protein_GI_number: 16801249 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Listeria innocua # 2 143 4 141 153 136 46.0 1e-32 MKLLITSDHEMQELGQILGTHAVAGNILLLTGDLGAGKTTLTKGIAKALGIKRPVKSPTY TIVREYKEGTLPLFHMDMYRLKDGDLSSIDLNDYFEQNGVIVIEWPEFVMDNLPADYLKI NIARIDDTWDSTKRSLVLTSSGENSNIWLNKILPDIEK >gi|308166143|gb|AEHO01000006.1| GENE 35 35545 - 36525 991 326 aa, chain - ## HITS:1 COG:L107797 KEGG:ns NR:ns ## COG: L107797 COG0280 # Protein_GI_number: 15673641 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Lactococcus lactis # 1 323 1 326 326 363 57.0 1e-100 MKVFDILKQKALSCEQSIVFPEGNDLRVLEAVCRLKSERMVNPILLGDVDEIKKLALQNH LNLADIRIINPLTYNQIDEMIDALVKRRNGKNTVQEAAEMLKHGSYFGTMLVYLHKAAGM VSGAAHSTADTVRPALQIIKTLPGMSRVSGAMIMERETEKYIFSDCAINIDPDAQTLAEI AYQSYLTAKMIGLDPKVAMLSFSTKGSAKGPMIDKVIQATKIVHETHPEVKIDGELQFDA AFVANVAAKKAPNSEVAGKANVFVFPELQSGNIGYKIAQRLGNFTAVGPVLQGLAAPIND LSRGCSANDVYLAGILTAVQAIEAKK >gi|308166143|gb|AEHO01000006.1| GENE 36 36576 - 37271 700 231 aa, chain - ## HITS:1 COG:BH3850 KEGG:ns NR:ns ## COG: BH3850 COG0692 # Protein_GI_number: 15616412 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus halodurans # 7 222 6 222 224 250 55.0 1e-66 MKKFIGNDWDQILDPIFESDRYQQLHEFIKHEYSTKVIYPDMYHIYTAFKLTPFYKTKVV ILGQDPYHNPQQATGMSFSVNPGVALPPSLRNIYKELHNDVGAKIVNHGYLKKWADQGVL LLNAVLTVPYGKANGHQGKGWEFVTDQAIKSLSDRGGVVFILWGKFAQNKIPLIDVNKNF ILKSAHPSPLSASYGFFGSHPFSKCNELLKKLGKSPIDWQLPESVAPNDVV >gi|308166143|gb|AEHO01000006.1| GENE 37 37359 - 38222 868 287 aa, chain + ## HITS:1 COG:SA0517 KEGG:ns NR:ns ## COG: SA0517 COG0561 # Protein_GI_number: 15926237 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 284 1 284 289 174 38.0 1e-43 MIKLIASDMDGTLLNEKMQISDENIKAIKYAQKKGVEFLIATGRSKLESAKLLANAGIQV GYINLNGAMLYNTEGDLVFEQDIPTEKSKEIIEILNESGYYFEIVSADNVYSNSKLERIT NVSNLLVDLNKNLDFRHAVPLSSGSEQIMGISFVDNYSNLLNLPNFKVMKFLAFKPDGAT FDQVSKKLLQLGDLVITASSRTNIEINHKNAQKGIALMHYAKMKGIPTDQVMAIGDNLND KSMIERAGVSVAMGNAVDEIKALAKHITLKNTEDGVAHAIYEFLGDN >gi|308166143|gb|AEHO01000006.1| GENE 38 38222 - 38737 450 171 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1299 NR:ns ## KEGG: LGAS_1299 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 161 1 161 171 90 32.0 3e-17 MLYQIHLVNNIFQNQFKVTNQYHEISYFICGCLNTLSQMIILKTKNNEEIGRLYHDKKCP NSKYYIKIKDNAPINITTVNLGYKEVLFAAHLCYWAYGNVKNQQFYCYKGIKKIATIFIA IKSNDITISCDIKDNIDPTYILLTAILITKLHVSTLHLPNLKILTNPQLQA >gi|308166143|gb|AEHO01000006.1| GENE 39 38542 - 38967 257 141 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501460|ref|ZP_05744362.1| ## NR: gi|259501460|ref|ZP_05744362.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_06149 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners DSM 13335] # 1 73 1 73 74 150 100.0 2e-35 MKKELGDKCEISEHSLRKSVKQLYDSIYKWLDHGCLRGVDNFIDDIQNIADYFEFMSSVV DVKPLWLKSLQPKNNFDYACSCGFVNIFKFGKCRVDTCNFVIKIAVSKMYVGSMLSLISQ LIVISLDLIAIKIVAIFFIPL >gi|308166143|gb|AEHO01000006.1| GENE 40 39473 - 40762 1685 429 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 41 366 19 354 419 174 32.0 3e-43 MKFTKKLATLAVTALAVVSLTACSNKSSNSSAKIPTKISKKTTVVFWHGMVGGQEKALKS MAKEFEAKNPKIHIKLENQGKYSDLQAKINSTLQSPKNLPTISQAYPGWLLVAAQAKKLV DMKPYITNSKIGWGSVTKSDIRADLLKGAQIKGVQYGIPFNKSIEVLLYNKDLLKKYGVK VPKNMAELKKAAKVIYKKSDHKVVGAGFDSLSNYYALGMKEKGHDFNNKIDFTSSDSKSI IDFYANGIKDGYFQTAGSAGYLSGDFSNQKLAMYVGSSAGECFVKMGVGKKFEYGVAPRP SEYNIAQGTDIYMFDSASADQKAAAFMFIKFLLTKENQLAWADKTGYIPVTNTVISSEAY KESKKTKMPPILTKAMANLYSVPVVKNSNAAYAAVNTELQAVFAQAKKHKDWSENIKKGQ HKIDSAWKQ >gi|308166143|gb|AEHO01000006.1| GENE 41 40801 - 42090 1631 429 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1639 NR:ns ## KEGG: LGAS_1639 # Name: not_defined # Def: metallo-beta-lactamase superfamily hydrolase # Organism: L.gasseri # Pathway: not_defined # 1 428 1 432 433 593 66.0 1e-168 MNLKHKTKVTFYNGLTTIGGPMIEVAYNDSHVLFDLGEVFKPDLELADESFQTLIDNQLI GDVPDFYDYHLTGKKLSDSHWKASAAYISHVHLDHSKALNLLDESVKLYTGPITASMLPV LNKDGNYLLPAAGKPKNYTRPIIAADLNVPIKVGDITLEIVPSDHDAYGATGLIIKTPDK KIAYTGDIRLHGYHPEWVEAFMHKGHGCDMLIIESTALSWPNENHSEEFTGPKNEDELID RIVQYQIDNPKRQITFNTYISNVERILRIIKDSPRKVVLSAKRAEFLKLSIGVDVAYYYL PGEEIIPILRSDLEVDYNTLLADESEFLWQAVADFDKLKSGSLYIHSNAEPLGSFDPAYQ PFVDTLEQHQVEVVMLRCSGHASASALEKIIRGFEPSVLVPVHSMHPELLENPCGSRLLP ERNQVFTFE >gi|308166143|gb|AEHO01000006.1| GENE 42 42074 - 42892 782 272 aa, chain - ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 54 271 60 277 277 165 41.0 9e-41 MKKIKTILIYIFVTFFAIITVFPFIYMIFGGLMTYEETTRIPPTFVPGSFKISNYLAVFN QAPFARYFFNTFVTATTTTVVSLFTSILGAFAMANLKFKGKGLIKIILISLLMVPGEAII FTNYTTIMSMGLINTYIGLVIPFLTSIFYMYYLQSYFKSITPTVYKAAMIDGASDWEYIW RILVPMSKSGLITVALLSFISGWNAFLWPLLVTNESDMRLLNNGLAAFATEAGSQTQLQL AAATLIVLPILIVYFVFRKQIIRGVVNHEFKA >gi|308166143|gb|AEHO01000006.1| GENE 43 42894 - 43757 627 287 aa, chain - ## HITS:1 COG:lin0218 KEGG:ns NR:ns ## COG: lin0218 COG1175 # Protein_GI_number: 16799295 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 10 284 15 288 292 159 36.0 5e-39 MENNQKKAWLFLLPAIISVTIFSIWPIIRAFIISFQGGPLICLNFNGIENYKYIFADTDF WNSLTNTAIYAFMTVPIALAIALALAWFVFSKIRHQSFFEAMFFMPYVTSTIATGIVFRY IFNGKYGLLDFVLKMLHLPAPDWLDDPSMSLISLIIFGIWSSLAFNIVILIGALRNIDPN YYVLADMYGANESEKFWRITIPQLFPTLAFLLTVNLIGAFKVYTQVFALFNGSAGQGNSA ITSVFYIYNKFQVANTPGVAMAATVCLFLFILFITCLQRKLMKRVNS >gi|308166143|gb|AEHO01000006.1| GENE 44 43757 - 44812 1368 351 aa, chain - ## HITS:1 COG:ML1089 KEGG:ns NR:ns ## COG: ML1089 COG3839 # Protein_GI_number: 15827534 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Mycobacterium leprae # 3 312 13 326 392 261 42.0 1e-69 MVYENGYQAISDISFTVKKGELVCLLGPSGCGKTTTLNMVAGLLNPTGGDILVDGKSVLN VAPKDRNIGYVFQNYALYPHMTVLQNVMFPMTVGKNKKSKEEAKQIAERFMRLTHIEEYA NQKPGKLSGGQQQRVSIARALVQQPKILLMDEPLSNLDARLRLKIREEIRALVKKVGITT LFVTHDQEEALSIGDKIILFNEGVIQQDAASYEIYLNPANQFVANFIGNPVVDNFNVEVS DGKVIGDGFEIPISAFDSDRFKKNLTDGVYTLSLRPENVFPVDNQADGFFTCKIDDIELI GRERILKFTINGLGQRSLVKVEANVEPGDEVCFGLNLDRAFIFDNNGERIY >gi|308166143|gb|AEHO01000006.1| GENE 45 45014 - 46003 1001 329 aa, chain + ## HITS:1 COG:L0024 KEGG:ns NR:ns ## COG: L0024 COG1087 # Protein_GI_number: 15673961 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Lactococcus lactis # 1 327 1 326 326 396 55.0 1e-110 MNILVIGGAGYIGSHAVRKLLDSGYHVVVLDNLITGHRKAIDPRAKFYQVDLLNTFLVSK ILRNEKIDAVMHFAAYSLVSESVQKPLLYYQNNITGMISLLNAMNDAKVKYLIFSSSAAT YGIPEKLPITEEAPLKPINPYGETKMMMEKMMLWADKANNIKSIALRYFNVAGATSDGTI GEDHRTESHLIPNILKCADSHDKIFTIYGNDYQTIDGTNVRDYVEVEDLIDAHILALKHL IKTNLSDVFNLGTTHGYSNLEILECAKRITATDIPYKFGPRRGGDPDSLVADSTKARTIL GWQPKHENIDNIIASAWKWHQKHPNGYED >gi|308166143|gb|AEHO01000006.1| GENE 46 46061 - 46303 297 80 aa, chain - ## HITS:1 COG:L0224 KEGG:ns NR:ns ## COG: L0224 COG0282 # Protein_GI_number: 15673994 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Lactococcus lactis # 1 72 320 391 395 77 52.0 7e-15 MGGLDALVFTAGIGENESLYRQAIVDKLSVLGLKIDEKANSVNGEKVISAVDSKAKILII PTNEELVIARDVVRLAQINK >gi|308166143|gb|AEHO01000006.1| GENE 47 46377 - 47261 851 294 aa, chain - ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 287 1 285 395 330 54.0 2e-90 MKKILAINSGSSSFKYKLFNYPSEEVVAQGQAQRIGLAGATFSLKLADGSKYESEIKIPD HKTAIQLLLTWLPKYNVINDLKEIAGIGHRVVAGGEIFSESALIDKEKLQQIYDLSDYAP LHNPYEADGIRDFMQLLPGVPQVAVFDTSFHHTLDPVHYLYSLPYKYYEKYRARKYGAHG TSVRYVSHRAAELLNKPLNELKMIVCHLGNGASITAIKDGKSYDTSMGFSPVAGITMSTR SGDIDPSVLQYVMKKENISDFNKMINILNNKSGILGISDYSPDMRDIKKKSCCR >gi|308166143|gb|AEHO01000006.1| GENE 48 47427 - 50021 2844 864 aa, chain - ## HITS:1 COG:lin1675_1 KEGG:ns NR:ns ## COG: lin1675_1 COG1012 # Protein_GI_number: 16800743 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Listeria innocua # 5 457 3 455 455 511 54.0 1e-144 MAKEIASATKKEQIDVQAMIDSYVVQAHVALDKMANFSQEQVDKICEAIAKVGEQNSYLL AKMAVEETGRGIVEDKTIKNMFASENIWNSLRHEKTVGIISEDPERQLIKIAEPVGVIAG VTPVTNPTSTVIFKSMIALKTRNTIIFGFHPQAQKCCVKTAELIREAAIKAGAPDNCIQW IEYPSIEATNALMTHPNIQTILATGGPGMVKAAYSSGKPALGVGPGNGPAYIEKTANYQR AAYDIILSKTFDNGMVCASENSVVIDKDIYDKVKKEFEAWNCYFLNKDEIKKFETTFIDP RRGTVAGPIAGKSAYEIGKLCGVDVPEDTKVIIAEYSGVGKEYPLSAEKLSPVFTMYKVS GADEAFKICKDLLSYGGRGHTVGIHTENKELIKKFALAMSACRILVNTPAALGGIGDLYN NMLPSMTLGTGSYGANSMSHNISAADLLNIKTVAMRRDNMQWIKVPKKTYFEHNAANYLK HMPDVEKFFIVTDETVAGKYANQITDIISQRLGKKSYEVFQAVKEHPTTDVILDGVHRMN IFKPDAIVALGGGSVMDAAKIMRLFYENPDMTLEDSYQKFIDIRKRVVRFPKTNMVQLVC IPTTSGTGSEVSPFAIIKDTQTGIKHTLCDYSLNPDVAIVDDNFVETLPAKLVANSGMEA LAHAMESYVSTMATDFTRGWSMEAIKLIFANLEKSYKGDQAARSKMHNASTLAGMAYANA FLGVGHAIAHTLGSTFNIPSGLSDAITMPYVIKFNAQRPRKLPIRPHYSVFRADKDYAEI ARSLGIQGKNDQELVDGLINKFVELAKSINMTLNLKDNGVSEADFNNKVEQLAVEAYGDQ NIVTNPSAPLIKQIEQLMKKIYVG >gi|308166143|gb|AEHO01000006.1| GENE 49 50351 - 51724 1209 457 aa, chain + ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 13 454 14 454 458 358 44.0 1e-98 MKQKKSHSSKDISMKRSLTNTHIQLIALGGTIGTGLFLGVGNSIELAGPAVILIYTLVGF FLFLLMRALGELILSDLNKNTYIDFITQYLGKVIGTVTGYLYWFSWLSLGMAELTALGLY FRYWWHDLPLWLPGSITLIILLMINLISAKVFGNMEFSFAIIKILTIVAFVLLVFYLLIT NGSTKLYGAISFSNLFKDGGFFAKGANGFFSGFQMVIFSFIGVELIGLTAAEAQDPKKTI VKAINELPVRIILFYVLAILAILLVIPWKQVAINDSPFVQALGATGIKNAACIINFVVIS AAISSTNTFIYSGGRLLFSLNYHGQSNFAKCMGQLNKRQLPENALLFSTLLIGIAPLMNL FLENAFHFIAATSTSMFLIIWSIMIWAHIRYRKQTPEKQLHNFRMPLYPYTDYLVLGFFI TMIGLLLWVPKDRIPMISALVIFSILILSIKFIKKIK Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:32:20 2011 Seq name: gi|308165933|gb|AEHO01000007.1| Lactobacillus iners LactinV 09V1-c contig00003, whole genome shotgun sequence Length of sequence - 211729 bp Number of predicted genes - 214, with homology - 211 Number of transcription units - 101, operones - 51 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 6 - 65 2.9 1 1 Tu 1 . + CDS 140 - 598 435 ## FMG_0943 hypothetical protein - Term 580 - 615 0.2 2 2 Tu 1 . - CDS 627 - 2024 637 ## COG1204 Superfamily II helicase - Prom 2073 - 2132 3.8 3 3 Tu 1 . - CDS 2153 - 3202 814 ## CLM_2298 DEAD/DEAH box helicase domain-containing protein - Prom 3267 - 3326 4.8 4 4 Tu 1 . - CDS 3447 - 4010 432 ## CLM_2299 hypothetical protein - Prom 4074 - 4133 4.5 - Term 4531 - 4560 2.1 5 5 Tu 1 . - CDS 4566 - 5222 726 ## MGAS10750_Spy1699 hypothetical protein - Prom 5472 - 5531 3.2 - Term 5385 - 5427 -0.6 6 6 Tu 1 . - CDS 5545 - 6141 606 ## MGAS10750_Spy1698 superfamily II DNA and RNA helicase - Prom 6253 - 6312 5.0 + Prom 5998 - 6057 4.5 7 7 Tu 1 . + CDS 6140 - 6379 121 ## + Term 6403 - 6442 -0.7 8 8 Op 1 . - CDS 6334 - 6585 276 ## MGAS10750_Spy1698 superfamily II DNA and RNA helicase - Prom 6609 - 6668 2.3 9 8 Op 2 . - CDS 6672 - 7001 348 ## SPAP_0865 hypothetical protein - Prom 7032 - 7091 5.4 - Term 7077 - 7113 2.1 10 9 Tu 1 . - CDS 7160 - 7423 119 ## SPN23F_09511 hypothetical protein - Prom 7444 - 7503 4.8 11 10 Tu 1 . - CDS 7568 - 7882 312 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 12 11 Op 1 . - CDS 8000 - 8257 375 ## gi|309804715|ref|ZP_07698780.1| conserved hypothetical protein - Prom 8277 - 8336 2.2 13 11 Op 2 . - CDS 8340 - 8774 361 ## SSA_0253 CAAX amino terminal protease family protein, putative - Prom 8830 - 8889 5.3 - Term 8941 - 8988 -0.7 14 12 Tu 1 . - CDS 8996 - 9322 296 ## gi|309804729|ref|ZP_07698794.1| hypothetical protein HMPREF9213_0084 - Prom 9484 - 9543 2.7 15 13 Op 1 . - CDS 9550 - 9837 292 ## COG0286 Type I restriction-modification system methyltransferase subunit 16 13 Op 2 . - CDS 9891 - 10088 269 ## bpr_I1915 DNA-binding protein excisionase family protein - Prom 10130 - 10189 8.3 - Term 10336 - 10394 3.1 17 14 Tu 1 . - CDS 10420 - 11769 1086 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Prom 11831 - 11890 7.5 18 15 Op 1 . + CDS 12125 - 12358 147 ## gi|309808867|ref|ZP_07702748.1| Na+/H+ antiporter NhaC 19 15 Op 2 . + CDS 12409 - 13503 1021 ## COG1757 Na+/H+ antiporter 20 15 Op 3 . + CDS 13578 - 14291 587 ## COG0670 Integral membrane protein, interacts with FtsH + Term 14295 - 14353 7.1 - Term 14291 - 14329 4.8 21 16 Tu 1 . - CDS 14334 - 14915 590 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 15033 - 15092 11.8 22 17 Op 1 2/0.111 - CDS 15094 - 16002 1141 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 23 17 Op 2 21/0.000 - CDS 16022 - 17452 1686 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 24 17 Op 3 31/0.000 - CDS 17456 - 18895 1637 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 25 17 Op 4 1/0.167 - CDS 18895 - 19197 356 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 26 17 Op 5 4/0.000 - CDS 19208 - 20323 1209 ## COG4851 Protein involved in sex pheromone biosynthesis 27 17 Op 6 5/0.000 - CDS 20344 - 22362 1940 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 28 17 Op 7 . - CDS 22376 - 24604 2219 ## COG0210 Superfamily I DNA and RNA helicases - Prom 24641 - 24700 9.0 29 18 Op 1 . - CDS 24706 - 25317 390 ## COG1705 Muramidase (flagellum-specific) 30 18 Op 2 . - CDS 25320 - 25931 693 ## LBA1940 hypothetical protein - Prom 26078 - 26137 8.6 - TRNA 25989 - 26074 54.5 # Leu AAG 0 0 31 19 Tu 1 . - CDS 26146 - 27288 1678 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 27335 - 27394 9.6 - Term 27370 - 27425 5.4 32 20 Tu 1 . - CDS 27436 - 30099 2563 ## COG0474 Cation transport ATPase - Prom 30127 - 30186 7.5 - Term 30113 - 30154 5.0 33 21 Op 1 5/0.000 - CDS 30257 - 31120 1004 ## COG0171 NAD synthase 34 21 Op 2 . - CDS 31123 - 32601 1501 ## COG1488 Nicotinic acid phosphoribosyltransferase 35 21 Op 3 . - CDS 32643 - 33341 794 ## COG3774 Mannosyltransferase OCH1 and related enzymes 36 21 Op 4 3/0.056 - CDS 33404 - 34492 991 ## COG0438 Glycosyltransferase 37 21 Op 5 . - CDS 34528 - 35253 876 ## COG1922 Teichoic acid biosynthesis proteins 38 21 Op 6 . - CDS 35257 - 36531 1206 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 36601 - 36660 3.6 39 22 Op 1 3/0.056 - CDS 36699 - 37013 291 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 40 22 Op 2 . - CDS 37085 - 37795 538 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC - Prom 37863 - 37922 9.9 + Prom 37802 - 37861 11.2 41 23 Tu 1 . + CDS 37969 - 38358 375 ## COG0615 Cytidylyltransferase + Term 38380 - 38409 2.1 - Term 38538 - 38584 8.2 42 24 Op 1 . - CDS 38722 - 39126 296 ## LAC30SC_10090 hypothetical protein 43 24 Op 2 . - CDS 39080 - 39583 436 ## LAC30SC_10090 hypothetical protein - Prom 39623 - 39682 6.7 + Prom 39552 - 39611 8.2 44 25 Tu 1 . + CDS 39690 - 40943 1211 ## COG0477 Permeases of the major facilitator superfamily + Term 40961 - 41000 7.0 - Term 40949 - 40988 3.2 45 26 Tu 1 . - CDS 41043 - 41744 875 ## COG2188 Transcriptional regulators - Prom 41777 - 41836 3.5 - TRNA 41876 - 41947 60.4 # Gln TTG 0 0 + Prom 41676 - 41735 8.8 46 27 Tu 1 . + CDS 41903 - 42091 195 ## - TRNA 41955 - 42036 64.5 # Tyr GTA 0 0 - Term 42107 - 42140 2.4 47 28 Tu 1 . - CDS 42148 - 43056 1266 ## COG0039 Malate/lactate dehydrogenases - Prom 43087 - 43146 13.3 - TRNA 43167 - 43241 61.0 # Gln TTG 0 0 - Term 43234 - 43271 4.1 48 29 Op 1 2/0.111 - CDS 43298 - 44461 1101 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase 49 29 Op 2 1/0.167 - CDS 44461 - 45681 1290 ## COG1257 Hydroxymethylglutaryl-CoA reductase 50 29 Op 3 . - CDS 45666 - 46832 1286 ## COG0183 Acetyl-CoA acetyltransferase - Prom 46969 - 47028 6.5 + Prom 46980 - 47039 9.1 51 30 Tu 1 . + CDS 47070 - 47630 463 ## LCRIS_00491 aggregation promoting factor + Term 47650 - 47687 1.0 - Term 47638 - 47675 4.0 52 31 Tu 1 . - CDS 47703 - 47987 268 ## gi|309803831|ref|ZP_07697916.1| hypothetical protein HMPREF9214_0363 - Prom 48057 - 48116 10.5 - Term 48113 - 48166 14.0 53 32 Tu 1 . - CDS 48267 - 49640 1561 ## COG1114 Branched-chain amino acid permeases - Prom 49668 - 49727 5.3 54 33 Op 1 1/0.167 - CDS 50030 - 51250 1572 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 55 33 Op 2 . - CDS 51295 - 52134 740 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen - Prom 52169 - 52228 6.8 56 34 Op 1 . - CDS 52529 - 54895 2467 ## Apre_0464 hypothetical protein 57 34 Op 2 42/0.000 - CDS 54905 - 55699 671 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 58 34 Op 3 25/0.000 - CDS 55699 - 56313 273 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 59 34 Op 4 . - CDS 56362 - 57273 1030 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 57333 - 57392 12.6 - Term 57374 - 57422 8.7 60 35 Tu 1 . - CDS 57437 - 57928 475 ## LPST_C0132 integral membrane protein - Prom 57992 - 58051 7.8 61 36 Op 1 10/0.000 - CDS 58068 - 58436 322 ## COG0691 tmRNA-binding protein - Prom 58466 - 58525 5.5 62 36 Op 2 . - CDS 58527 - 60803 1365 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 - Term 60836 - 60868 -0.4 63 36 Op 3 . - CDS 60874 - 61092 152 ## LAC30SC_02310 preprotein translocase subunit SecG - Prom 61142 - 61201 11.9 64 37 Op 1 . - CDS 61226 - 62524 1937 ## COG0148 Enolase 65 37 Op 2 13/0.000 - CDS 62575 - 63330 814 ## COG0149 Triosephosphate isomerase 66 37 Op 3 26/0.000 - CDS 63348 - 64562 1631 ## COG0126 3-phosphoglycerate kinase - Prom 64610 - 64669 2.2 - Term 64601 - 64637 8.7 67 38 Op 1 5/0.000 - CDS 64671 - 65687 1180 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 68 38 Op 2 . - CDS 65744 - 66775 904 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 67020 - 67079 75.9 + TRNA 67003 - 67074 40.0 # Pseudo CCG 0 0 + Prom 67003 - 67062 76.1 69 39 Tu 1 . + CDS 67289 - 67873 612 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Term 67888 - 67928 5.1 - Term 67868 - 67921 11.1 70 40 Op 1 2/0.111 - CDS 67982 - 69238 1090 ## COG0714 MoxR-like ATPases 71 40 Op 2 . - CDS 69254 - 70750 1441 ## COG3864 Uncharacterized protein conserved in bacteria 72 40 Op 3 12/0.000 - CDS 70743 - 71687 948 ## COG1481 Uncharacterized protein conserved in bacteria 73 40 Op 4 12/0.000 - CDS 71687 - 72721 1117 ## COG0391 Uncharacterized conserved protein 74 40 Op 5 . - CDS 72734 - 73609 950 ## COG1660 Predicted P-loop-containing kinase 75 40 Op 6 7/0.000 - CDS 73661 - 76477 2731 ## COG0178 Excinuclease ATPase subunit 76 40 Op 7 . - CDS 76505 - 78502 2008 ## COG0556 Helicase subunit of the DNA excision repair complex - Term 78512 - 78541 0.5 77 41 Op 1 1/0.167 - CDS 78560 - 79684 1170 ## COG1109 Phosphomannomutase 78 41 Op 2 . - CDS 79674 - 81230 1519 ## COG0492 Thioredoxin reductase 79 41 Op 3 . - CDS 81250 - 81615 370 ## COG0240 Glycerol-3-phosphate dehydrogenase 80 41 Op 4 . - CDS 81647 - 82270 707 ## COG0240 Glycerol-3-phosphate dehydrogenase 81 41 Op 5 10/0.000 - CDS 82307 - 83140 851 ## COG0682 Prolipoprotein diacylglyceryltransferase 82 41 Op 6 . - CDS 83156 - 84094 1047 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 83 41 Op 7 . - CDS 84098 - 84394 156 ## gi|259501055|ref|ZP_05743957.1| hypothetical protein HMPREF0520_0565 84 41 Op 8 6/0.000 - CDS 84411 - 85409 1007 ## COG1186 Protein chain release factor B - Prom 85436 - 85495 4.2 - Term 85522 - 85552 1.3 85 41 Op 9 . - CDS 85569 - 86702 1165 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) 86 41 Op 10 7/0.000 - CDS 86749 - 87969 1348 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 87996 - 88055 9.9 - Term 88052 - 88108 2.2 87 41 Op 11 . - CDS 88132 - 88689 727 ## PROTEIN SUPPORTED gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) - Prom 88729 - 88788 10.8 - Term 88862 - 88899 1.4 88 42 Tu 1 . - CDS 88934 - 89173 296 ## LJ0844 ComF operon protein 3 - Prom 89356 - 89415 10.6 89 43 Tu 1 . - CDS 89699 - 90715 679 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) - Prom 90850 - 90909 6.7 + Prom 90601 - 90660 4.8 90 44 Tu 1 . + CDS 90760 - 91425 443 ## COG1739 Uncharacterized conserved protein + Term 91529 - 91592 -0.6 - Term 91407 - 91468 17.1 91 45 Op 1 . - CDS 91472 - 92608 1052 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 92632 - 92691 8.2 92 45 Op 2 4/0.000 - CDS 92703 - 94334 2130 ## COG1418 Predicted HD superfamily hydrolase 93 45 Op 3 1/0.167 - CDS 94418 - 95455 1028 ## COG0468 RecA/RadA recombinase - Prom 95477 - 95536 11.2 - Term 95498 - 95542 9.2 94 46 Op 1 5/0.000 - CDS 95578 - 96156 296 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 95 46 Op 2 . - CDS 96159 - 97235 1273 ## COG1426 Uncharacterized protein conserved in bacteria - Prom 97261 - 97320 7.8 96 47 Tu 1 . + CDS 97171 - 97332 118 ## 97 48 Op 1 14/0.000 - CDS 97344 - 98567 1126 ## COG0612 Predicted Zn-dependent peptidases 98 48 Op 2 . - CDS 98564 - 99793 1174 ## COG0612 Predicted Zn-dependent peptidases 99 48 Op 3 . - CDS 99783 - 102047 1976 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 100 48 Op 4 . - CDS 102063 - 102470 593 ## LGAS_1345 hypothetical protein 101 48 Op 5 . - CDS 102481 - 102993 575 ## COG0219 Predicted rRNA methylase (SpoU class) - Prom 103014 - 103073 3.3 - Term 103001 - 103031 1.1 102 49 Op 1 . - CDS 103094 - 103639 475 ## COG0628 Predicted permease 103 49 Op 2 . - CDS 103633 - 104235 301 ## COG0628 Predicted permease 104 49 Op 3 . - CDS 104245 - 104625 515 ## LGAS_1348 glucitol/sorbitol PTS, EIIA - Prom 104731 - 104790 8.5 + Prom 104675 - 104734 8.3 105 50 Op 1 . + CDS 104761 - 105780 1033 ## COG2706 3-carboxymuconate cyclase 106 50 Op 2 . + CDS 105789 - 106622 743 ## COG1968 Uncharacterized bacitracin resistance protein 107 51 Op 1 7/0.000 - CDS 106747 - 107586 242 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 108 51 Op 2 6/0.000 - CDS 107558 - 108364 788 ## COG0061 Predicted sugar kinase 109 51 Op 3 . - CDS 108364 - 108990 628 ## COG2357 Uncharacterized protein conserved in bacteria - Prom 109014 - 109073 6.1 + Prom 108848 - 108907 4.8 110 52 Op 1 . + CDS 109068 - 109682 732 ## COG4116 Uncharacterized protein conserved in bacteria 111 52 Op 2 . + CDS 109747 - 110364 471 ## FI9785_1382 hypothetical protein - Term 110188 - 110233 3.1 112 53 Tu 1 . - CDS 110357 - 111226 463 ## COG4469 Competence protein - Term 111249 - 111300 10.6 113 54 Op 1 . - CDS 111304 - 112074 933 ## LBA0642 adaptor protein - Prom 112103 - 112162 11.4 114 54 Op 2 . - CDS 112165 - 112563 410 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 112603 - 112662 7.5 115 55 Op 1 . + CDS 112780 - 113274 224 ## LCRIS_00174 RNA polymerase sigma factor 116 55 Op 2 . + CDS 113336 - 113761 422 ## FI9785_1700 hypothetical protein + Term 113768 - 113802 1.1 - Term 113750 - 113796 4.1 117 56 Tu 1 . - CDS 113798 - 114658 685 ## LJ1019 hypothetical protein - Prom 114694 - 114753 5.4 - Term 114737 - 114772 4.0 118 57 Op 1 . - CDS 114793 - 115395 803 ## gi|309804687|ref|ZP_07698752.1| hypothetical protein HMPREF9213_0193 119 57 Op 2 . - CDS 115358 - 115840 709 ## gi|309804572|ref|ZP_07698637.1| Gram-positive signal peptide protein, YSIRK family - Prom 115931 - 115990 16.2 - Term 115959 - 116023 8.7 120 58 Tu 1 . - CDS 116025 - 117326 1618 ## gi|309804647|ref|ZP_07698712.1| Gram-positive signal peptide protein, YSIRK family - Prom 117385 - 117444 10.1 + Prom 117388 - 117447 10.0 121 59 Tu 1 . + CDS 117628 - 118086 414 ## LGAS_1773 hypothetical protein + Term 118301 - 118350 -0.7 - Term 118484 - 118513 -0.2 122 60 Op 1 . - CDS 118531 - 119631 1511 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 123 60 Op 2 . - CDS 119643 - 120947 1413 ## COG1705 Muramidase (flagellum-specific) - Prom 120974 - 121033 8.8 - Term 121041 - 121094 7.2 124 61 Op 1 . - CDS 121140 - 121406 414 ## LA2_00960 hypothetical protein 125 61 Op 2 . - CDS 121442 - 121654 299 ## gi|312871542|ref|ZP_07731635.1| conserved hypothetical protein - Prom 121780 - 121839 7.3 + Prom 121751 - 121810 9.9 126 62 Tu 1 . + CDS 121853 - 122287 512 ## FI9785_219 hypothetical protein + Term 122323 - 122368 7.7 + Prom 122294 - 122353 6.1 127 63 Tu 1 . + CDS 122400 - 124472 2235 ## COG3158 K+ transporter + Term 124473 - 124500 0.1 + Prom 124485 - 124544 6.5 128 64 Tu 1 . + CDS 124586 - 125770 1001 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Term 125779 - 125826 6.1 129 65 Op 1 42/0.000 - CDS 125829 - 126620 796 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 130 65 Op 2 . - CDS 126624 - 127277 196 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 131 65 Op 3 . - CDS 127300 - 128088 759 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 128159 - 128218 4.3 - Term 128175 - 128219 3.3 132 66 Tu 1 . - CDS 128230 - 129426 1380 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase - Prom 129457 - 129516 7.0 - Term 129483 - 129541 10.5 133 67 Op 1 58/0.000 - CDS 129549 - 133214 3876 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 134 67 Op 2 . - CDS 133233 - 136916 4258 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit - Prom 136950 - 137009 10.1 - Term 136965 - 137025 -0.3 135 68 Op 1 . - CDS 137118 - 139541 1943 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 139563 - 139622 5.7 136 68 Op 2 . - CDS 139624 - 140802 1154 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 140834 - 140893 8.7 - Term 140862 - 140910 8.1 137 69 Op 1 1/0.167 - CDS 140920 - 141429 475 ## COG4720 Predicted membrane protein 138 69 Op 2 . - CDS 141419 - 142273 804 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase - Prom 142442 - 142501 3.1 - TRNA 142288 - 142361 80.3 # Pro CGG 0 0 - TRNA 142401 - 142472 79.2 # Gly GCC 0 0 - Term 142391 - 142432 1.1 139 70 Op 1 3/0.056 - CDS 142526 - 144022 1606 ## COG1190 Lysyl-tRNA synthetase (class II) 140 70 Op 2 . - CDS 144055 - 145050 479 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase - Term 145069 - 145112 3.1 141 71 Op 1 14/0.000 - CDS 145130 - 147175 1223 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 142 71 Op 2 . - CDS 147259 - 148551 955 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 143 71 Op 3 . - CDS 148582 - 148920 378 ## LJ0280 hypothetical protein 144 71 Op 4 . - CDS 148920 - 149294 313 ## LGAS_0273 septum formation initiator 145 71 Op 5 3/0.056 - CDS 149377 - 149619 366 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 146 71 Op 6 7/0.000 - CDS 149633 - 152965 3512 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 147 71 Op 7 . - CDS 152986 - 153543 524 ## COG0193 Peptidyl-tRNA hydrolase - Prom 153598 - 153657 8.0 + Prom 153583 - 153642 11.6 148 72 Tu 1 . + CDS 153682 - 154653 1122 ## COG0039 Malate/lactate dehydrogenases + Term 154690 - 154748 13.1 + Prom 154708 - 154767 10.7 149 73 Tu 1 . + CDS 154793 - 155476 647 ## COG0517 FOG: CBS domain + Term 155493 - 155530 4.0 - Term 155472 - 155524 6.1 150 74 Op 1 5/0.000 - CDS 155554 - 156681 1079 ## COG0787 Alanine racemase 151 74 Op 2 . - CDS 156685 - 157047 279 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) - Prom 157080 - 157139 10.7 152 75 Op 1 2/0.111 - CDS 157164 - 158627 1448 ## COG0513 Superfamily II DNA and RNA helicases 153 75 Op 2 . - CDS 158643 - 160010 1283 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase - Prom 160070 - 160129 5.0 - Term 160081 - 160133 7.1 154 76 Tu 1 . - CDS 160149 - 160400 418 ## PROTEIN SUPPORTED gi|116628937|ref|YP_814109.1| 50S ribosomal protein L31 type B - Prom 160452 - 160511 10.2 + Prom 160477 - 160536 8.1 155 77 Tu 1 . + CDS 160714 - 162042 1390 ## COG0477 Permeases of the major facilitator superfamily + Term 162048 - 162077 0.5 + Prom 162067 - 162126 8.1 156 78 Tu 1 . + CDS 162192 - 162962 515 ## MARTH_orf139 hypothetical protein - Term 162835 - 162885 4.1 157 79 Tu 1 . - CDS 162964 - 163974 1055 ## COG0270 Site-specific DNA methylase - Prom 164180 - 164239 9.4 + Prom 164841 - 164900 6.9 158 80 Op 1 . + CDS 164935 - 165138 243 ## SDEG_0952 hypothetical protein 159 80 Op 2 . + CDS 165122 - 165370 293 ## FMG_0950 hypothetical protein + Term 165587 - 165637 6.2 - Term 165566 - 165633 17.1 160 81 Op 1 1/0.167 - CDS 165721 - 167817 1774 ## COG2217 Cation transport ATPase 161 81 Op 2 . - CDS 167837 - 168286 430 ## COG3682 Predicted transcriptional regulator - Prom 168330 - 168389 7.5 162 82 Tu 1 . - CDS 169036 - 169332 292 ## FMG_0943 hypothetical protein - Term 169670 - 169703 2.2 163 83 Tu 1 . - CDS 169828 - 172182 989 ## gi|309804732|ref|ZP_07698797.1| hypothetical protein HMPREF9213_0241 - Prom 172280 - 172339 2.6 - Term 172669 - 172728 2.8 164 84 Op 1 . - CDS 172744 - 172929 204 ## gi|309804694|ref|ZP_07698759.1| conserved hypothetical protein 165 84 Op 2 . - CDS 172929 - 173261 244 ## gi|259500974|ref|ZP_05743876.1| ATP-dependent RNA helicase 166 84 Op 3 . - CDS 173261 - 173674 469 ## ABC1055 hypothetical protein 167 84 Op 4 . - CDS 173674 - 174036 215 ## Shel_18760 hypothetical protein 168 84 Op 5 . - CDS 174000 - 174323 193 ## gi|259500972|ref|ZP_05743874.1| conserved hypothetical protein - Prom 174361 - 174420 7.5 - Term 174367 - 174403 1.3 169 85 Op 1 . - CDS 174464 - 174997 545 ## COG2856 Predicted Zn peptidase 170 85 Op 2 . - CDS 174999 - 175301 215 ## Fisuc_2499 hypothetical protein - Prom 175468 - 175527 9.9 - Term 175554 - 175588 1.3 171 86 Op 1 . - CDS 175768 - 176343 498 ## COG0582 Integrase 172 86 Op 2 . - CDS 176325 - 177005 471 ## LAR_1502 phage integrase 173 86 Op 3 . - CDS 177002 - 177205 295 ## LAR_1503 hypothetical protein - Term 177225 - 177266 -0.8 174 86 Op 4 . - CDS 177276 - 177794 617 ## LC705_01954 hypothetical protein 175 87 Tu 1 . - CDS 177895 - 178158 214 ## gi|256844384|ref|ZP_05549870.1| conserved hypothetical protein - Term 178179 - 178209 3.6 176 88 Op 1 . - CDS 178249 - 179088 571 ## lhv_0264 FtsK family DNA segregation ATPase 177 88 Op 2 . - CDS 179090 - 179647 525 ## gi|259500962|ref|ZP_05743864.1| hypothetical protein HMPREF0520_0472 178 88 Op 3 . - CDS 179647 - 180012 453 ## gi|256844381|ref|ZP_05549867.1| predicted protein - Prom 180152 - 180211 5.3 - Term 180427 - 180459 -1.0 179 89 Op 1 . - CDS 180587 - 181810 1183 ## BSU06780 hypothetical protein 180 89 Op 2 . - CDS 181797 - 183746 1797 ## LLKF_0604 DNA helicase 181 89 Op 3 . - CDS 183749 - 184462 582 ## Celal_3329 hypothetical protein 182 89 Op 4 . - CDS 184452 - 187172 2006 ## COG1002 Type II restriction enzyme, methylase subunits - Prom 187212 - 187271 7.0 - Term 187427 - 187469 6.5 183 90 Op 1 . - CDS 187474 - 188379 854 ## gi|309804683|ref|ZP_07698748.1| hypothetical protein HMPREF9213_0260 184 90 Op 2 . - CDS 188400 - 188741 312 ## gi|309804745|ref|ZP_07698810.1| hypothetical protein HMPREF9213_0261 - Prom 188769 - 188828 4.3 - Term 188848 - 188889 5.7 185 91 Tu 1 . - CDS 189009 - 190547 1875 ## COG0519 GMP synthase, PP-ATPase domain/subunit - Prom 190707 - 190766 8.8 + Prom 190674 - 190733 8.4 186 92 Op 1 7/0.000 + CDS 190898 - 191476 428 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 187 92 Op 2 . + CDS 191476 - 192759 399 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 192777 - 192806 2.1 - Term 192745 - 192809 7.4 188 93 Op 1 47/0.000 - CDS 192836 - 193198 503 ## PROTEIN SUPPORTED gi|161506945|ref|YP_001576899.1| 50S ribosomal protein L7/L12 189 93 Op 2 43/0.000 - CDS 193243 - 193758 701 ## PROTEIN SUPPORTED gi|227525593|ref|ZP_03955642.1| 50S ribosomal protein L10 - Prom 193896 - 193955 8.3 - Term 193786 - 193816 1.0 190 93 Op 3 55/0.000 - CDS 193986 - 194678 1031 ## PROTEIN SUPPORTED gi|238855647|ref|ZP_04645947.1| ribosomal protein L1 191 93 Op 4 45/0.000 - CDS 194775 - 195200 689 ## PROTEIN SUPPORTED gi|227525597|ref|ZP_03955646.1| 50S ribosomal protein L11 - Prom 195277 - 195336 7.2 - Term 195258 - 195293 -0.8 192 93 Op 5 . - CDS 195342 - 195893 704 ## COG0250 Transcription antiterminator - Term 195912 - 195936 -1.0 193 93 Op 6 . - CDS 195971 - 196138 142 ## gi|259500946|ref|ZP_05743848.1| preprotein translocase subunit SecE 194 93 Op 7 . - CDS 196144 - 196293 230 ## PROTEIN SUPPORTED gi|42518502|ref|NP_964432.1| 50S ribosomal protein L33 - Prom 196392 - 196451 10.2 + Prom 196323 - 196382 6.5 195 94 Tu 1 . + CDS 196432 - 197697 1209 ## COG0477 Permeases of the major facilitator superfamily + Term 197701 - 197736 5.1 - Term 197682 - 197730 7.1 196 95 Tu 1 . - CDS 197811 - 198356 465 ## LGAS_0345 ComX - Prom 198394 - 198453 6.3 - Term 198424 - 198468 -0.9 197 96 Op 1 . - CDS 198469 - 199092 496 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 198 96 Op 2 . - CDS 199080 - 199244 245 ## LJ0402 hypothetical protein 199 96 Op 3 8/0.000 - CDS 199225 - 199668 320 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 200 96 Op 4 1/0.167 - CDS 199655 - 200998 1237 ## COG0215 Cysteinyl-tRNA synthetase - Prom 201097 - 201156 10.6 - Term 201107 - 201155 2.1 201 97 Op 1 . - CDS 201186 - 202685 1610 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 202 97 Op 2 1/0.167 - CDS 202764 - 204143 1303 ## COG1066 Predicted ATP-dependent serine protease 203 97 Op 3 . - CDS 204220 - 204693 466 ## COG0756 dUTPase - Prom 204802 - 204861 10.5 + Prom 204752 - 204811 9.1 204 98 Tu 1 . + CDS 204841 - 206187 1394 ## COG3579 Aminopeptidase C 205 99 Op 1 . - CDS 206228 - 206578 331 ## LAC30SC_01690 2',3'-cyclic nucleotide 206 99 Op 2 . - CDS 206636 - 207163 559 ## COG4639 Predicted kinase 207 99 Op 3 . - CDS 207227 - 207904 496 ## COG0588 Phosphoglycerate mutase 1 208 99 Op 4 . - CDS 207906 - 208106 241 ## gi|259500932|ref|ZP_05743834.1| conserved hypothetical protein 209 99 Op 5 . - CDS 208109 - 208345 310 ## gi|309808408|ref|ZP_07702307.1| hypothetical protein HMPREF9211_1071 210 99 Op 6 . - CDS 208370 - 209257 722 ## COG1230 Co/Zn/Cd efflux system component 211 99 Op 7 . - CDS 209272 - 209961 875 ## COG0406 Fructose-2,6-bisphosphatase - Prom 209992 - 210051 6.5 + Prom 209989 - 210048 9.4 212 100 Tu 1 . + CDS 210105 - 210683 329 ## COG0693 Putative intracellular protease/amidase + Term 210839 - 210880 -0.9 - Term 210661 - 210693 2.5 213 101 Op 1 . - CDS 210698 - 211021 320 ## COG2076 Membrane transporters of cations and cationic drugs 214 101 Op 2 . - CDS 211071 - 211727 1291 ## COG5523 Predicted integral membrane protein Predicted protein(s) >gi|308165933|gb|AEHO01000007.1| GENE 1 140 - 598 435 152 aa, chain + ## HITS:1 COG:no KEGG:FMG_0943 NR:ns ## KEGG: FMG_0943 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 152 295 446 446 230 98.0 1e-59 MADSIIKLREQGINSITQLDDLIKKSADDRQDLLDKIKKIETEMKSLSQDMENINTINKY REIYKYHKKNPEDKQFAEEYYSELSVYKIAAKEILENYKKLPNTKEILSNLDKLQEKQNT LMQEYSLNKEQFSDLVQYRKNYENYYGKEIER >gi|308165933|gb|AEHO01000007.1| GENE 2 627 - 2024 637 465 aa, chain - ## HITS:1 COG:yfjK KEGG:ns NR:ns ## COG: yfjK COG1204 # Protein_GI_number: 16130545 # Func_class: R General function prediction only # Function: Superfamily II helicase # Organism: Escherichia coli K12 # 13 116 340 443 729 73 31.0 8e-13 MEEVRDENIDKLIDIINEKVHEQYYLRYCLKKGIAYHFGGIPEEIKIKVEELYKLGVIKT IFCTSTLLEGVNLPAKNIFILSEKIGLSNMNEVDFWNLAGRAGRLSKDLAGNIFCVNLYN QRGYWNDDSKIKILRDKNIEETKPIILRKNNKNLYKNIANYYTRNDYTNKKLSEDDKKII EMYGNILLYHDTVNSDSVLKDRFIDSGNNSLDVLKKIRNENSVPGNILAKSIDIDIGIQN RVFKGNKEKLPTETTYEGCYKVLRLLCEEYDWLSTESKGNYPMIRSKEQLSYYATLMEGW INSKPLKYLIQKTISYYYNSGESKEISLRKDGKIYYMKFDKNNALHINTLINNLIKNLEN NIKYKIKTYVSNYQSILRSCGVDLECDWEEYIDYGTTNPQIIDIQNLGFSRTMAIFLMDK YYNLFIRNDIGEIIDIDDEKLRTSIDKKKYDEEYKELNILFEWEK >gi|308165933|gb|AEHO01000007.1| GENE 3 2153 - 3202 814 349 aa, chain - ## HITS:1 COG:no KEGG:CLM_2298 NR:ns ## KEGG: CLM_2298 # Name: not_defined # Def: DEAD/DEAH box helicase domain-containing protein # Organism: C.botulinum_A2 # Pathway: not_defined # 4 329 2 326 846 136 32.0 1e-30 MNNFIDYISSKAYTDDYLINLIYNLEKNFCNKLLDQDYKIDLSNKEKCDLMRFADILCRS SKDEHKNLSLRIVSLVYEFEELLEDKFIKLSIINVLTKLGNFPSINLMGIKDENTGIDEI DLDLIVKRVYNESPIKEIFTDEQLKIFNELQTNNHFSFSGSTSFGKSFIFEAFTKYLIDE HNQSDNIAFIVPTKALINQVSYKIRKLVKSYSYKVINSPEIPKVIKRQDGKYIFVFTPER LITYFLDTTNPKIDYLFVDEAHKLLSVKDTRTPLMYHALVMAKRKSINIFFASPNIPNPS VFLELVNNTPDESHAVKVESVSQNRFFVNCHTDSSYMISDYGKDILFPN >gi|308165933|gb|AEHO01000007.1| GENE 4 3447 - 4010 432 187 aa, chain - ## HITS:1 COG:no KEGG:CLM_2299 NR:ns ## KEGG: CLM_2299 # Name: not_defined # Def: hypothetical protein # Organism: C.botulinum_A2 # Pathway: not_defined # 4 183 39 213 300 120 39.0 3e-26 MCPINARKFDYNQISLVLVDSVIDYAISKKNITKYQNKPGRLSQMARKKFKECLNNTGEL GELLLYCFLEGHLNAPKILTKMEMKTSNSLYVNGSDGVHLLNNGDGTYKLIFGESKLYKK LSDALNAAFNSINDFINENNPNGKNKTGINYEKDLISSNIENCEISDEDKDVLELLIYPT KNEKKYA >gi|308165933|gb|AEHO01000007.1| GENE 5 4566 - 5222 726 218 aa, chain - ## HITS:1 COG:no KEGG:MGAS10750_Spy1699 NR:ns ## KEGG: MGAS10750_Spy1699 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 218 1 218 218 287 91.0 2e-76 MEYKDIRENLEEMMNDNYKDFIKALVSIEKGVNDEKALEEVYVLFMIKDTTGLLNDDFDY MIDDMKEQGKIVENSNEIEEKDDLINLVGNIAGEVENLERENSNGEKFKVSNFSIISKDD NGNKIYTNCSTHGDKTKDLENLKQGDFVKIFGQVKTRIDNNGKEHKNVRILSSKLLKAKE QVKSQDKDKKSILGQIKSFKTDDKVKSNKKDYSKGTER >gi|308165933|gb|AEHO01000007.1| GENE 6 5545 - 6141 606 198 aa, chain - ## HITS:1 COG:no KEGG:MGAS10750_Spy1698 NR:ns ## KEGG: MGAS10750_Spy1698 # Name: not_defined # Def: superfamily II DNA and RNA helicase # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 198 2254 2454 2547 325 94.0 6e-88 MTNTHTFKLLVKAEYFGEFSNSTDGNITRLDNAIEKMPSRLERLNQNLENYKESLENAKV ELTKSFEKADELSDKTLRLAEINKLLDMGEVEELENQSPLLEDLKRAIVDYSNYEFSESN SYEDFDKLYPDLSHIGLAYTESKHSIQYEVNLEEKTWTQYLDNVAIRTESFVDEDISNSQ AIKDMTEAIKMSSFDDLV >gi|308165933|gb|AEHO01000007.1| GENE 7 6140 - 6379 121 79 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLYETCKSKFLYLPMTLLSFIFTFFISSNSFSPASFLSKILFVPRLIEVNLLSLSPNFS TLSIFYLTAFISISVFNIL >gi|308165933|gb|AEHO01000007.1| GENE 8 6334 - 6585 276 83 aa, chain - ## HITS:1 COG:no KEGG:MGAS10750_Spy1698 NR:ns ## KEGG: MGAS10750_Spy1698 # Name: not_defined # Def: superfamily II DNA and RNA helicase # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 83 2106 2188 2547 139 96.0 4e-32 MTSKTPVRVAEDVDEASLSYSEIKALATGNPLIKEKMDLDNEVTKLKMLEANYKSDKYKL EDKVNKYYPQSILKTEMEIKAVK >gi|308165933|gb|AEHO01000007.1| GENE 9 6672 - 7001 348 109 aa, chain - ## HITS:1 COG:no KEGG:SPAP_0865 NR:ns ## KEGG: SPAP_0865 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_AP200 # Pathway: not_defined # 1 99 1 99 257 179 95.0 3e-44 MNFDYFYNRQSEMYNFIRLPIVLMEDEIFESISIEAKVLYSYMLNRMGLSYKNGWIDEDG KVFIYYIIESIKDQFNCASEKANKLIAELDIKSGIGLVELFVKVMKMIR >gi|308165933|gb|AEHO01000007.1| GENE 10 7160 - 7423 119 87 aa, chain - ## HITS:1 COG:no KEGG:SPN23F_09511 NR:ns ## KEGG: SPN23F_09511 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_ATCC700669 # Pathway: not_defined # 17 87 1 71 97 129 91.0 5e-29 MIDKSNKKFGINLLSCMPPPFMKKDKEVYDKVCEYLSPHLNKDMEVLELACGFRVIIVIE ANSYVNTRSSKLLPKFKTQKINSWCAA >gi|308165933|gb|AEHO01000007.1| GENE 11 7568 - 7882 312 104 aa, chain - ## HITS:1 COG:SP1029 KEGG:ns NR:ns ## COG: SP1029 COG2265 # Protein_GI_number: 15900900 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 104 441 543 543 185 92.0 2e-47 MHVETIALLSKLDVDKHISVEIELDEMGLTSAESKATYAQIKEYVWNKFQLKVSILYIAH IKRKCGIELLEHYNKSKKEKQIIPQCTPEKEEAIMDALRHFKMI >gi|308165933|gb|AEHO01000007.1| GENE 12 8000 - 8257 375 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804715|ref|ZP_07698780.1| ## NR: gi|309804715|ref|ZP_07698780.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF0522_1155 [Lactobacillus iners UPII 143-D] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF0522_1155 [Lactobacillus iners UPII 143-D] # 1 85 1 85 85 134 100.0 2e-30 MYIIRVLLPVILISILVVATINIAKKKFKNHNSDEKQEENHMSEGMAVGMCLGTAASIAL DIGDIAIGMSIGMLLGMIVGMNFKK >gi|308165933|gb|AEHO01000007.1| GENE 13 8340 - 8774 361 144 aa, chain - ## HITS:1 COG:no KEGG:SSA_0253 NR:ns ## KEGG: SSA_0253 # Name: not_defined # Def: CAAX amino terminal protease family protein, putative # Organism: S.sanguinis # Pathway: not_defined # 16 144 76 204 204 117 49.0 1e-25 MILVYLSVSFLSLYMVKNIDTATSEFHGLGVSGILPALLYAIFNTALPEEIFFRGFILKR IPSKFGFYAANLIQSVLFGLLHGTMFFSIAGMIKAMIIIVLTGAIAFCMGYVNEKKAGGS IIPSWCLHVLSNAFASFVALFSIL >gi|308165933|gb|AEHO01000007.1| GENE 14 8996 - 9322 296 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804729|ref|ZP_07698794.1| ## NR: gi|309804729|ref|ZP_07698794.1| hypothetical protein HMPREF9213_0084 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0652 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0709 [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF9213_0084 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0652 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0709 [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners UPII 143-D] # 29 108 1 80 80 162 100.0 9e-39 MSSLCDCDYCMLYQSKSKAVYPELADWLMQHGIDIGKPYETMWLDPDENGVVYYSGVQYI VFGTCEEQFESGVGDIIIRCVYSFPTPLGIEGDFFILEAYPMYLCLDR >gi|308165933|gb|AEHO01000007.1| GENE 15 9550 - 9837 292 95 aa, chain - ## HITS:1 COG:all2689 KEGG:ns NR:ns ## COG: all2689 COG0286 # Protein_GI_number: 17230181 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Nostoc sp. PCC 7120 # 1 58 1 58 145 81 63.0 3e-16 MAVKKSELYSLLWEACNKLRGGVEPSRYKDYVLVLLFFKYVSDRYKGQPFAEFTVKEGTS LNNTTMIVSSGVGNSIIPVRFNNRPEIVVVTMKSE >gi|308165933|gb|AEHO01000007.1| GENE 16 9891 - 10088 269 65 aa, chain - ## HITS:1 COG:no KEGG:bpr_I1915 NR:ns ## KEGG: bpr_I1915 # Name: not_defined # Def: DNA-binding protein excisionase family protein # Organism: B.proteoclasticus # Pathway: not_defined # 8 65 6 63 63 72 63.0 8e-12 MSEIIKGEKWIGTKEAAEYLGVQPATIRDWIRKGKDIPRKKIGKAWKFKLSELEEWIASG KSTME >gi|308165933|gb|AEHO01000007.1| GENE 17 10420 - 11769 1086 449 aa, chain - ## HITS:1 COG:SPy1346 KEGG:ns NR:ns ## COG: SPy1346 COG2265 # Protein_GI_number: 15675282 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 446 13 461 462 423 48.0 1e-118 MEKNQIVELEITDLSYEAMGVAHYEGLTIFVNNALPGEIVQAKILKIKKNFAFAKVEKFL QKSSDRMDVPLRQWVQTGLAALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPES TAYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVP AYDEIKHNGEVRYLEIRRSKANGQLMIVLVCLHKSFKNLDAVVQAIQSLDNVACVILNHN PHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTS DDVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEEL MPQWANEGLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQIFQAAG YDFDCIDPVDMFPQTPHVECVVLLTKTHR >gi|308165933|gb|AEHO01000007.1| GENE 18 12125 - 12358 147 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309808867|ref|ZP_07702748.1| ## NR: gi|309808867|ref|ZP_07702748.1| Na+/H+ antiporter NhaC [Lactobacillus iners LactinV 01V1-a] Na+/H+ antiporter NhaC [Lactobacillus iners SPIN 2503V10-D] Na+/H+ antiporter NhaC [Lactobacillus iners LEAF 2052A-d] Na+/H+ antiporter NhaC [Lactobacillus iners UPII 143-D] Na+/H+ antiporter NhaC [Lactobacillus iners UPII 60-B] Na+/H+ antiporter NhaC [Lactobacillus iners LactinV 01V1-a] Na+/H+ antiporter NhaC [Lactobacillus iners SPIN 2503V10-D] Na+/H+ antiporter NhaC [Lactobacillus iners LEAF 2052A-d] Na+/H+ antiporter NhaC [Lactobacillus iners UPII 143-D] Na+/H+ antiporter NhaC [Lactobacillus iners UPII 60-B] # 1 50 1 50 459 81 94.0 2e-14 MKHKVTFNEAICILLALLFILGISVIKLGIAPEVPVLFTICLFIFGSNFFMVAVGNQSKM VSKKVLVSQLSLSLFLS >gi|308165933|gb|AEHO01000007.1| GENE 19 12409 - 13503 1021 364 aa, chain + ## HITS:1 COG:FN1422 KEGG:ns NR:ns ## COG: FN1422 COG1757 # Protein_GI_number: 19704754 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Fusobacterium nucleatum # 1 358 85 444 473 242 40.0 1e-63 MYLGFHLLNGNYFIPSVFLVCTIIGVAIGSGFTTISTIGIALFGIGISMKANPGLVAGAI ISGAVFGDKMSPLSDSTNLASAVAESELFAHIKNMLWSTLPAFFCSLLLFTILGHGGAMN AARIETLSHILKSHFMISWWTIIPIIFMVLCAWKKIPAIPTLFLNITISIIIIFIQNPHQ SIASLNQIIVNGYVAKTNDAAFNALLSRGGIASMMETVALIISTLSLGGLLMKFNIVQSA MSPLVAKLKTPGSLIIATILSGIGINLLVGEQYLSVILPGRAYKSAYTKLCLSSLALSRV LEDGGSVINYLIPWGVAGAFAASTLGVPVLTFLPFTFFSLFSPIFSIISGISGIGLKRIH GIMQ >gi|308165933|gb|AEHO01000007.1| GENE 20 13578 - 14291 587 237 aa, chain + ## HITS:1 COG:SPy0358 KEGG:ns NR:ns ## COG: SPy0358 COG0670 # Protein_GI_number: 15674509 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pyogenes M1 GAS # 17 234 11 229 229 118 37.0 1e-26 MNNFENIFQTRRSIVDNVALNRFLTKIYSIVALAILVSAATAYTVLHFFANQFFNALSQN HALSFVLLILPFALIIGTSFSKNPILSFVLLMLTAMVYGLTFSIICLAFTQTSITAAFLS SSAVFITMAFIGTTTKKDLSNLGSYASAALIGLIVATIINMFLRNPMVTYIFSYIAVVIF TILTAWDAQKMKNIFIQNHDEIATTSLAIIGALTLYLDFINLFIQFLQIFGFSDNRR >gi|308165933|gb|AEHO01000007.1| GENE 21 14334 - 14915 590 193 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 45 190 51 193 194 117 42.0 2e-26 MAMASCVFARKNSKHSSTLRTSKVSLQKKISRPYPDPTDLVKEGEWKKSSEKKAYPNLKK VKKLVIRVSIKGNRVYLLDNNKVIYTMLASCGKYKNGKSLTPLGKYQIIGGRGDKFFNSK LNEGALNWVSWTENCVYLFHSVPICKNQKINKSEAAKLGKQPASNGCIRLSLPDSKWLMD NVPTGTPVVIKTH >gi|308165933|gb|AEHO01000007.1| GENE 22 15094 - 16002 1141 302 aa, chain - ## HITS:1 COG:lin1865 KEGG:ns NR:ns ## COG: lin1865 COG1597 # Protein_GI_number: 16800931 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Listeria innocua # 1 300 1 293 310 328 52.0 5e-90 MTKRARLIYNPVSGHEQNIRNVASILDILEQAGYEASAFRTTAEPFSAQKEANRVGKDGF ELIVGAGGDGTINEIVNGIAPLDHRPQMAVIPSGTTNDFARALKIPRDDLVAAARLVLQG KTRKMDIGKAGDKYFMNIAASGSLTELTYGVPSEWKSILGYTAYLLKGAEMFPKISNNKM RLTYDKGVYEGDLSMFFLGMTNSIGGWEQVMPDAQLSDGLFQLIVVKTSNPIDILRLMAM AINGNHVKDPNIIYTKTRSLKVELLDNSHSKKKIAVNLDGDIGGYLPMSFTNLQQHIEFF VG >gi|308165933|gb|AEHO01000007.1| GENE 23 16022 - 17452 1686 476 aa, chain - ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 1 476 1 476 476 582 60.0 1e-166 MNFKSTIGLEVHFELKTKSKIFSPSPVTYGAEVNTATNVIDWGMPGVLPMVNKEVYRLGL MVALATNSQISPVTHFDRKNYYYPDNPKAYQITQFFQPLARNGYIEVEVNGKKKRIGIHE MHIEEDAGKNTHGTNGYSYVDLNRQGVALLEVVSEPDMETPEEAYAYLEKLRQIVQFTGA SDVKMEEGSMRVDTNISIRPAGQKELGTKVEMKNLNSFQHVRQSLAYEEKRQAAVLLSGG QVQLSTRRFDESTGKTVLERVKEGDADYRYFPEPDIAPYHIKQSWIDEIKASLPESPFDR RKRYVNEYGIKEYDADVILQTKESSDFYDATVKAGADATLAANWLNTQVNGYLNEKQVDL DEVKLTPEHLAQIIKMIQDGTISSKIAKKVFQESIEHGTEPKKYVADKGMIQLSDLSVLA PLVAKIVDNNPQSVEDFKNGKDRAIGFLVGQIMKETHGKANPKVVNELINKELQSR >gi|308165933|gb|AEHO01000007.1| GENE 24 17456 - 18895 1637 479 aa, chain - ## HITS:1 COG:SPy1771 KEGG:ns NR:ns ## COG: SPy1771 COG0154 # Protein_GI_number: 15675615 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Streptococcus pyogenes M1 GAS # 1 474 1 481 488 519 54.0 1e-147 MNYLNETIESLNKKLKNKEITAEQLTQDTLAKIKELEPKLNAMITVIDDAKPAENLDFSN ELAGIPIAVKDNIITNNVKTTAASHILYNYMPVYDATVVSKLKAAKMTIIGKTNMDEFAM GSSSENSYFGAPKNPWDLTKVTGGSSGGSAAAVAGGEVIAALGTDTGGSIRQPAAFNGIF GIKPTYGRVSRWGLIAFGSSLDQIGVMTKRVQDSAKILNVLSGADDHDATVSEREVPDFT KALNQDVKGLRVAVPEEYFGEGISEKVKALIKEQIKVLEDHGAIINKVSLPHTKYVIPDY YIIASSEASSNLQRFDGIRYGYRSKDAKNLLDVYVKSRSEGFGDEVKRRIMLGSFALSAG SYDRFFRQAAKVRTLICRDFEKIFEENDVIVGPTTPTPAFGLNSKTKDPLEMYANDILTI AANLAGVPAASVPAGLVDGMPVGLQIMAKRFDEESIFRVADFIERSNKFYEKKPTGLED >gi|308165933|gb|AEHO01000007.1| GENE 25 18895 - 19197 356 100 aa, chain - ## HITS:1 COG:SP0438 KEGG:ns NR:ns ## COG: SP0438 COG0721 # Protein_GI_number: 15900356 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 100 1 100 100 78 44.0 4e-15 MKITKDEIIHVAKLSRLEFNAKEIDKFTEQMGEIINMANQLGEVNTDGVEETVQVVDRDT VFRADEPEHWQSKAELMKNVPDKVDGFIKVPVIIDKDDNA >gi|308165933|gb|AEHO01000007.1| GENE 26 19208 - 20323 1209 371 aa, chain - ## HITS:1 COG:lin1869 KEGG:ns NR:ns ## COG: lin1869 COG4851 # Protein_GI_number: 16800935 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Listeria innocua # 56 368 57 370 371 192 33.0 1e-48 MGLLIFAFAINLTACGNLKNSNLTNNPANTNGKQKTYQTTVTDKNGYNVLLKDGQYLISP TNGITASNNDNNVDNRSLEVGLLNISHDLFSTDKYVFQEGQVLTPRQVNIWLSRYSKHNK QGLNYKKSKKYSPIILNQIFEQDFLVKSGSSYKLGGISLGLALNSVDYYTKVKDGPEYHV NIKKNQQLAYGKKVAYTLIKRLRKISALKHIPILIGLFQKTGRDSLIGGNYLAYSIVDTN SSKINEWKSVDYSSQVLPTIGDTKPINSTDAASFSDFKAAIQGYFPNISGVIAKVHYQNK HLKQMNISITTQFYGYAQIESFSRLTLSVAKKYLPNNVPIEIRIESVNNLQATITKNDAD DSYYVHVFSGE >gi|308165933|gb|AEHO01000007.1| GENE 27 20344 - 22362 1940 672 aa, chain - ## HITS:1 COG:lin1870 KEGG:ns NR:ns ## COG: lin1870 COG0272 # Protein_GI_number: 16800936 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Listeria innocua # 20 667 14 663 671 623 49.0 1e-178 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVDYNVELKID GLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKIDIEVRGECYMDKAT FAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPPETITSQHQA ILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDLALQAKLGN TVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVSRAVLHNPD LLRQKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYEIPKICPSCNQNLVHLKDEV ALRCINPMCPAQVEEGITHFASRQAMNIVGLGPKIVRQLIALHLVNDIADLYFLSAAQLA KLDHFKDKSIQNLLNAIENSKQNSVELLLFGLGIDHVGAKAARLIAQKFHDLNTIRECSI ADLMQIDTIGQTIAESMVKYFEQQSVKELMDQLQIAGVNFKYLGASDTQSIEDNFFKGKN VVLTGKLAHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTE DEVIAKLNSQKE >gi|308165933|gb|AEHO01000007.1| GENE 28 22376 - 24604 2219 742 aa, chain - ## HITS:1 COG:SPy1267 KEGG:ns NR:ns ## COG: SPy1267 COG0210 # Protein_GI_number: 15675225 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 6 741 4 771 772 739 50.0 0 MNEESMLAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAI TFTNKAASEMRERVKQLLDSDADSIWMSTFHALCVRILRRYAEKIGYANNFSIADTAEQL TLIKRILKELNIDSKKFDPKSLVNAISNAKNDLLDPEEYAKQVSNEYEKKIAIVYREYQK NLQHDCIMDFDDLIMQTLVLFKSEPEVLHYYQNKFWYILVDEYQDTNQAQYELCYLLAQQ HKNICVVGDADQSIYGWRGANMQNILNFEQDYRNDNCNTIKLEQNYRSTGHILNAANAVI KNNKNRKPKKLWTNSGEGSKVNYYRASTGNDEAIFIIGKINKEIKENGYKYSDFAILYRT NAQSRNIEEAFVKSNIPYKIVGGHKFYDRKEIKDIMAYLRLVANPADYMSLHRIINAPRR GIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIMKDFGRKLEEMIIFAKNNTV TELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQFDDNYEANEDGAKAVDDFL AEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGMEEGIFPLARAQSDNSELEEE RRLAYVGITRAKKQLYLTNAIHRMLYGHYQNNNASRFISEINDIDLADISPVADNSFSSF ANKNTNSHSVQHEKPVIAKKAAGAIGADKKTWSVGDQVEHKAWGIGVVTKVNGSGEDMEL DIAFANLGVKRLLAAFAPIKKV >gi|308165933|gb|AEHO01000007.1| GENE 29 24706 - 25317 390 203 aa, chain - ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 8 201 11 204 209 148 37.0 9e-36 MKKKYCKNQLDFMLIKVLLILLTFILCLLISRHIHHQVQPPINNDIDLIQKKAFIKKMVP LAQAEYQKYPIFPSVTIAQACLESDYGRSSLSKKYNNLFGMKGTDPNRTKLMETKEFVNN KWIVIKARFCVFNSMEECVKKHTLLLVNGTTWNPRQYQHVLNSTTYIQQAESLQKDGYAT DPSYSKSLLKIIDEFKLYQYDYR >gi|308165933|gb|AEHO01000007.1| GENE 30 25320 - 25931 693 203 aa, chain - ## HITS:1 COG:no KEGG:LBA1940 NR:ns ## KEGG: LBA1940 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 202 1 201 201 176 50.0 8e-43 MANKKINTIAIFSVFVAIVMLQTFIPCLGYIRFFPALPAITTLPLTVTVFGILMGPKMGG FLGFFWGALSLFRAYTQPADLVSIMLFQNAVIAIIPRFLAGVVPGLIGKLWQQRHSTRNY LISVAAGVASTLTNTLMVILFTSIFYNHSSKLMSCLGYADTSKSLIIVLLIALSFNSACE AIFTGILTPLIVVPLKKVLSKRL >gi|308165933|gb|AEHO01000007.1| GENE 31 26146 - 27288 1678 380 aa, chain - ## HITS:1 COG:SPy2206_3 KEGG:ns NR:ns ## COG: SPy2206_3 COG0516 # Protein_GI_number: 15675939 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pyogenes M1 GAS # 99 379 5 283 286 395 76.0 1e-110 MSSWETKFAKKGLTFDDVLLIPAESHVLPNEVDLSVKLADNIKLNLPFISAGMDTVTESS MAIAMALQGGMGVIHKNMSIVAQAGEVATVKGVMLSGNFTRAAVDEENKLLVAAAVGVTS DTFQRAQALLEAGANAIVIDTAHGHSAGVLRKIKEIREHFPKATLIAGNVATAEGTKALF DSGVDIVKVGIGPGSICTTRIIAGVGVPQITAIYDAASVAREYGKTIIADGGIKYSGDIV KAIAAGGNAVMLGSMFAGTTETPGQIITDGDKKYKVYRGMGSIGAMAQSHGSSDRYFQGG VNEANKLVPEGIEARVEYKGDVSDTIFQLIGGLRSGMGYVGARNIDELINKAQFVQMTNS GLRESHPHDVQITKAAPNYK >gi|308165933|gb|AEHO01000007.1| GENE 32 27436 - 30099 2563 887 aa, chain - ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 2 884 7 885 893 955 59.0 0 MQQEIYQQKSEDVIKQLKTSINTGLSLQQVSDRLKTDGLNELVGKQKRGLFLRFIDQFKD FMIIVLIVAAILSGVVANEWTDAAIIMFVVLLNAVLGIIQEARSEAAIEALKQMSTPNAH VRRDGQVVEIPSTQLVKGDIVLLEAGDVVPADLRLVLAKNLKIEEAALTGESVPVEKKSK VIEADDVALGDRINMAYSNTNVTYGRGEGVVVATAMDTEVGKIATMLNNADETDTPLKAN LNQLGKTLTLMILGICAFVCVVGIFTKQGTMPFDKLAIEMFLVAVSLAVAAIPEGLPAIV TIILALGTQNMAKHKAIVRKLPAVETLGATDIIASDKTGTLTQNKMTVEKVFYNDTYHCD KLEDKDNLAIKIMTLANDTKITDNNSLLGDPTETALIQYALDSKWNVVDYLANNKRVQEV PFDSDRKLMSTVHQQADGKYFVAVKGAPDELLKRAVSLWHDDKIVDFDASAKAKILAANN DMAKNALRVLGLAYKVVDNKFTEVNSATVEQNLIFVGLVGMIDPERPEAKAAVAKAKSAG IRTIMITGDHQVTAAAIAKRLGIIGEDDTNCVITGAELDKISDTDFVKCVANYKVYARVS PEHKVRIVKAWQKNGKIVAMTGDGVNDAPSLKQADIGIGMGITGTEVSKGASDMVLADDN FATIVEAVRQGRKIFSNIQKAILYLMSCNVGEVLTVFMMTMLGWEILAPVQLLWINLVTD TLPAVALGVDPVERDIMKRKPRGKKSNFLSAVGISIIYQGILEGILVLGVYQIGLHIGPH IGNYKLLHGDALTMAFLTLGLIQLFHAFNSKFITKSIFCKDTLKNKWFNLAIIVSAIIMS AVEIPGLTSLFKVTELNITQWFVVLTAGILMIAIVEIVKLFQRNAEK >gi|308165933|gb|AEHO01000007.1| GENE 33 30257 - 31120 1004 287 aa, chain - ## HITS:1 COG:lin1078 KEGG:ns NR:ns ## COG: lin1078 COG0171 # Protein_GI_number: 16800147 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Listeria innocua # 3 275 2 274 274 364 67.0 1e-100 MRDLQKKIIAYEQVAPKIDAKKEIRRSINFLKEYLLKNTGLKTYVLGISGGQDSTLTGKL AQMAISELRAETGDNEYQFIAVRLPYGVQKDASDAADAVAFQHADQDLIVNIKSAVDATV KSLEESGIEISDFNKGNIKARQRMIVQYAIAGANKGAVIGTDHAAENISGFFTKYGDGAS DILPIFRLNKRQGKALLQELNCPKHLYQKAPTADLEEKRPALPDEQALGVSYDKIDDYLE GKELAKVDAERIEYLWTRSEHKRHLPITIFDDFYKKIIKMSCLTCQH >gi|308165933|gb|AEHO01000007.1| GENE 34 31123 - 32601 1501 492 aa, chain - ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 4 492 7 494 495 701 69.0 0 MFNPELDRDDSLILHTDLYEINMMYTYFKKGISERKAVFEVYFRKEPFGNGYALFAGLSH MIDYIKKIHFAESDLQYLKENENYDDDFISYLRNLKINLTVRSAQEGELVFANEPIVQVE GPLAQCQLVETAILNIINFQTLIATKAARVKIAVGDQAIMEFGSRRAQETDAAIWGTRAA YIGGFDATSNVRAGKLFGIPISGTHAHSLVQAFGNEYDAFMAYAQTHKDCVFLVDTYDTL RSGVPTAIKVADEMGDKINFLGVRIDSGDMAYISKKIRKQLDDAGYPNAKIFASNDLDEK TILNLKMQGAKIDVWGVGTKLITAYDQPALGGVYKLVSIEHSDGKMYDTLKISSNAEKVS TPGKKQVWRISANSEKKNEGDWISCWNEDPRKLDALYMFHPQYTYINKVVTNYTAYPILK DIFVDGKQVYVEPSLQEIKKFAMTNLDGLWDEYKRSLNPQEYPVDLSQALYDHKMHLISK IRTQIIKRECED >gi|308165933|gb|AEHO01000007.1| GENE 35 32643 - 33341 794 232 aa, chain - ## HITS:1 COG:FN1241 KEGG:ns NR:ns ## COG: FN1241 COG3774 # Protein_GI_number: 19704576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannosyltransferase OCH1 and related enzymes # Organism: Fusobacterium nucleatum # 1 178 1 176 243 130 41.0 3e-30 MIPKIIHYVWVGGNPKPKNIQKCMKTWSKHLKDYQIIEWNESNFDIHENKYVEQAYKAKK WAFVSDYIRAKAIYEMGGIYLDTDVLVLDDLHELLDNRAFVGFENIDNPFTAVFGAEPKH PLIKDMLDYYDDRNFEFDASDQLKGVNTVSVSDILKKVYGAKPNNLEQTIKDGVHVYPDG ILCNPSGQSKTIHVFTGTWMEGKKSLKRKIITMLKVNIKTKFQAKVYAKLFR >gi|308165933|gb|AEHO01000007.1| GENE 36 33404 - 34492 991 362 aa, chain - ## HITS:1 COG:BS_ypjH KEGG:ns NR:ns ## COG: BS_ypjH COG0438 # Protein_GI_number: 16079303 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Bacillus subtilis # 63 352 71 375 377 89 29.0 1e-17 MKVLHINAGLENGGGLYHIINLLSAAKMRNKDYELLTLAEGPVKAAAEEAKIKVTSLESN SRYDIKVFRRLIDYINQNNFDIVHTHGPRANLFLYLIHKKIKAKWVVTVHSDPLLDFANK GLIGKIFTKLNILALRHADQIFAITQRFADLLTDQVKIDPKKIIVIYNGIFFKNQIPVKL THDKFNIINVARCEKIKGQDLLLKALHAADDQRLMLHIAGDGSQLPRLKELAKELKLEDQ VIFHGFLSHTELTKLYQKMDLAVLSSYSESFPLVLLEAGDNELPLLSTTVGDIKKLIPDD EYGFIVNIGDEVALSDQLVNISKLSKKQLQMIAKKEKKYLANTFSIYNQLAEIDQGYQLL MK >gi|308165933|gb|AEHO01000007.1| GENE 37 34528 - 35253 876 241 aa, chain - ## HITS:1 COG:BS_tagA KEGG:ns NR:ns ## COG: BS_tagA COG1922 # Protein_GI_number: 16080628 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Bacillus subtilis # 1 241 1 240 256 181 39.0 7e-46 MKKVNVLGVEFDNLTLIEFKKVFLQRIKDQKSTLIVTANPEIVMQANNDAAFMNLIKNDA DFITADGIGIVLAGKIQHTPVKERVTGYDMFVWFLKIANEQKKRVYLIGAKAEIASLVDA KLRKEYPDLQIAKVEDGYFKEDLETVAKRIKAAKPDMVFAALGCPRQEQLLAILKKQGVP AIMMGVGGSFDVFSGKVRRAPKFFQKIHLEWFYRLATNPARIGRMQALPKFIVNVYRHRK N >gi|308165933|gb|AEHO01000007.1| GENE 38 35257 - 36531 1206 424 aa, chain - ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 20 343 71 397 476 107 24.0 6e-23 MVFCSLSISYIGMRTISKIRAHSNKEELTEAFWGLWYFQALASSVMIILFIIFLLFIHIK YWNYFFIMLPFLISAQLDISWFFQGLAEFGKVVLRNTCVKLLSIALILLLVKNPQDLDKY MLIMSVSTLLGSCVFWLNIKQYVAKPVKHFYKFQQTIKAIIILLIPQIATQIYTALDKPL LGMFQSSTQVSFYDNSQKISKIILGIITSITIVMMPKMAAEIKEKQRVMLRKSLEATVML GLIFAVVVMINTKEFVPFFFGDKYLAMTDLMFWFTLTVVIIPLGGVFANQFALANGKDKE YAIPVIIGAVIECIAASILDIAYGACGALIAILFTETIVCVLRIWIVRKDYEFKYVFQDI PKYFLAAIITFACGMLMPSLTHSAFLNMAYKSILVMLIYGLILALLHLELNQDIVTVIKK IIKR >gi|308165933|gb|AEHO01000007.1| GENE 39 36699 - 37013 291 104 aa, chain - ## HITS:1 COG:MTH361 KEGG:ns NR:ns ## COG: MTH361 COG1887 # Protein_GI_number: 15678389 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Methanothermobacter thermautotrophicus # 1 80 261 343 369 72 40.0 2e-13 MYDLLGNTDFLITDFSSVYFDYLHLDKPIYFVTNFLKEYEKTRGLLMGPYADIVPGAKIN TFVELLDILENDTDTFAHARHQWLNMTYEIDFQQNCKRCFDALK >gi|308165933|gb|AEHO01000007.1| GENE 40 37085 - 37795 538 236 aa, chain - ## HITS:1 COG:MTH365 KEGG:ns NR:ns ## COG: MTH365 COG1887 # Protein_GI_number: 15678393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Methanothermobacter thermautotrophicus # 4 233 40 273 409 62 25.0 8e-10 MMFLLKFVGTDNNLYVILNEAGRSGSNGFIFYRYLKKYHPEVDVVLVEPWPSAHLAFKTW LKIGRAKHIFTTHQPFKIKSKQVLSCFWHGIPLKKMALMSNNTSYKSDCRNIKSWQKADY ISSSSSLYETLMTSCISVKASKYVRTGFPRIDALYNPEVTKADVLKQYFNVTDVTAKIGV YMPTFRYELEDDSIMDKISRGNFFAFDYFDLSKLEQVLQKKNKYLIVKLHPYEMKK >gi|308165933|gb|AEHO01000007.1| GENE 41 37969 - 38358 375 129 aa, chain + ## HITS:1 COG:lin1076 KEGG:ns NR:ns ## COG: lin1076 COG0615 # Protein_GI_number: 16800145 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Listeria innocua # 1 127 1 126 127 185 74.0 2e-47 MKKVITYGTFDLLHYGHVRLLKRAKELGDYLIVALSTDEFNEFKKHKEAYNSYNERKYIL EAIKYVDEVIPENDWNQKITDVQKYNIDTFVMGDDWKGKFDFLKEYCNVVYLPRTPGIST TKIKHDLHN >gi|308165933|gb|AEHO01000007.1| GENE 42 38722 - 39126 296 134 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_10090 NR:ns ## KEGG: LAC30SC_10090 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 8 134 160 286 286 125 50.0 4e-28 MIQMWHYFVIFMQFYELDSNILISKKIIERYINTKNTKMQVVLLAIITNILNFALNDNKY QSIDYFMENGEKIKNKPELLFYKSAFCFFENIIFYRRTNDIKYYEKCIKIKDFLVGVGIT EYGKLLNKFLVKYK >gi|308165933|gb|AEHO01000007.1| GENE 43 39080 - 39583 436 167 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_10090 NR:ns ## KEGG: LAC30SC_10090 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 163 1 163 286 190 61.0 2e-47 MTIGELLKKYRVSQGKKQAEFTKRGLIVSQSYYSKVEKNINRITADSLIELLNYNNIPLW KFFSQLNSTDELKYQQIKDFNNTMVEAYYENNIEEVKHLKPLLEASNLSIKDKEEEQLII DAWIEAMKPSSEAPNLKLRNKIKEKIFNIYDFNDTNVALFCDFYAIL >gi|308165933|gb|AEHO01000007.1| GENE 44 39690 - 40943 1211 417 aa, chain + ## HITS:1 COG:SP0145 KEGG:ns NR:ns ## COG: SP0145 COG0477 # Protein_GI_number: 15900083 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 379 1 378 408 99 26.0 1e-20 MDVFLKNKYYRRFSIASFLSTAGDILFYLAFLTYASKLKNYSLALSLIAISESIPRLLDI FGGYLADKTRNKLKNIFWMAIIRFFLYGLVGFLFITHISQWNLVLIIIVINFISDIVGTY SAGLCAPIIVELVDKEKFAEAEGFTNGLDEVFSTTAQFVGSGLLLFLSYSNLAFINAFTF LAAGLLYLSVGLRHTKENTPLASTEVNDQNFFATMKASYIQIKKASGLLSTVLVIALLNG ALSAMGSLLPIIMAGHRSTMLISNYSFTLAVIGVVISVGSILGSAFGPQLFKKQSVFIMV MIAIVLSIATTIAAFLTNIYAILPFYLLLAAIASTASLKMQQWLVTTIDQTILASSMGLL NTIIMATAPAMTMFLTTISGLTNVKYSLFVLLVIECISFIVSIKLNAKDKMNNLEIS >gi|308165933|gb|AEHO01000007.1| GENE 45 41043 - 41744 875 233 aa, chain - ## HITS:1 COG:SP1446 KEGG:ns NR:ns ## COG: SP1446 COG2188 # Protein_GI_number: 15901296 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 232 6 233 235 216 50.0 4e-56 MQEPVYIKIHNQLKKDIENKKYAVGARIPAERKLALEFNVSRMTLRQAIKTLEDEGILER RLGSGTYVASQKVKEKMMGIMSFTDITKLNHQTASTRLISYRVTQPSLTEREKLNLNSMD EVLRMERVRSADNIPICYEVATIPYTLVKNFSKAELSAGLYQTLIEKGGYQIGKVVENIG ATIATEMDARLLSVNKGEALVTRRQVTFLQNKMPFEYVRAFYVADRFEFTFEK >gi|308165933|gb|AEHO01000007.1| GENE 46 41903 - 42091 195 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTAPKTVALPLGYNPITMEESGFEPLNSERTVLQTGAFSHFATPPKRYLIMIIKNILNCK HF >gi|308165933|gb|AEHO01000007.1| GENE 47 42148 - 43056 1266 302 aa, chain - ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 2 299 3 300 302 238 42.0 8e-63 MRKVGIIGLGHVGATVAYTLFTHGVVDTMVLIDANEGKAVAEYNDLRDTLARNDYHVNVY MQDWSQLADADIIITSFGKISAVIENGDRFGEFGINSKNAKEIGEKIKATGFKGIIINIS NPCDAITTLLQETIGLPHNKIFGTGTFLDTARMQRIVAEELGQDPINVQGFVLGEHGSSQ FSAWSTVSVNGKSVLEIFDDQKLAQMSAQSNKNSFIVARGKGYTSYAIATCAVKLVLAIF SDAHLFAPVSVYLEEFGTYIGYPAIVGKNGIERVIKLELPDKEYAQLAKSADIIKEHIDQ IK >gi|308165933|gb|AEHO01000007.1| GENE 48 43298 - 44461 1101 387 aa, chain - ## HITS:1 COG:lin1454 KEGG:ns NR:ns ## COG: lin1454 COG3425 # Protein_GI_number: 16800522 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Listeria innocua # 1 385 1 388 388 327 45.0 3e-89 MKIGIDKIGFYTPNKYVDMVDLAMARNVDPNKYLKGIGQEKMSVADISQDAVSMAINATK QYLPKIDIDKVGLLIVGTESSVDESKSASLFVKSALKLKASVRTFEIKEACFGLTAAIFT AYDYISTHADKTAIVIGSDIARYGLNTAGEVTQGAGSISLLIKKDPAMLSINPQTSAYSK DINDFWRPTGSATALVDGKYSTQVYLDFFEYTFKNYQKQNHVDISNFKALLYHLPFTKMG LKANNLAIANLAERDAKKLTNEFKNSIELSKQVGNIYTGSLYLGLLSLLVHAELKLNDLI GLFSYGSGAMAEFFTFNIEAGYRNEIIDPYLILNRRKRLTVAEYEKIFTESLQAPIDGQS LVSDEQAGMWYFAGTKNHIRQYCEKNR >gi|308165933|gb|AEHO01000007.1| GENE 49 44461 - 45681 1290 406 aa, chain - ## HITS:1 COG:SP1726 KEGG:ns NR:ns ## COG: SP1726 COG1257 # Protein_GI_number: 15901559 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Streptococcus pneumoniae TIGR4 # 38 402 46 423 424 250 41.0 4e-66 MCDKMKFYELSAMQRRQYYLNKGINFVDIDATELDRLDQLSENVVSKITLPLGVVQELIV NEQTYCVPMCTEEPSVVAAANHGAKFFNLAGGTKCICQRQGIYGQIICEINSQFNLVMLQ NKLPNIIEAVNQKFDSLIKHGGGLRKIETFVKEDMLYLRTLVDPADAMGANKTNLILEDI SQRLQKMTGVSELICAILSNYPSQFVQAKVEIPLQLVGTHLATKIAKLSRIGQVDPYRAV TNNKGIMNGVDAVLLASGNDYRAVESACGVQASIDGHYTSLSKWQIEENKLIGCLTLPLA IGVVGGSISARKDVQQSFSLLGKVNAQQLANIIASIGLANNFAALYAITSQGINAGHMKL QARNVVAQLEADHNQKKQVLNQMIANQKFTLTDAKQILELIRKQDN >gi|308165933|gb|AEHO01000007.1| GENE 50 45666 - 46832 1286 388 aa, chain - ## HITS:1 COG:lin1453 KEGG:ns NR:ns ## COG: lin1453 COG0183 # Protein_GI_number: 16800521 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Listeria innocua # 1 372 1 375 389 320 44.0 2e-87 MKEIYIIDAKRTPFGKFRGFFSDQNPIDMASQLLSKMLSKNKLPKKQIEAVYIGNVCSTG LGQNPARQVALHCGLSQETISTTINDVCGSSLKAMRLAQAQMQIGDFDMVAVGGVENMTQ APFFVESQFKDHSQDHLQWTLMHDCLNDAFSHQAMGITAEMVAQAHKISRDAMDQYAYES HQKAIKAIKSDWFAQEIIPFKKENEILVNDENVRFDTSLEKLAQLRSVFMENGTVTAGNS SPLSDGASFLILATGDKVKELKLKPIAKLGQFIEIGCDPNYMGYGPYYAIRKLLNNTNTT IDDYDVIEINEAFAAQIVAVARDLRIPNNKLNIAGGAISLGHPLGATGTRLVATAINNLH QVSGHNALVSLCIGGGQAIACNIECVTK >gi|308165933|gb|AEHO01000007.1| GENE 51 47070 - 47630 463 186 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00491 NR:ns ## KEGG: LCRIS_00491 # Name: not_defined # Def: aggregation promoting factor # Organism: L.crispatus # Pathway: not_defined # 1 186 1 223 223 134 40.0 1e-30 MLSKKHFFKTFMISCLILISIFTFNSFNKDNSAQAATKQIIRINYVPNYGIAVWDNYDNG HVTGQYLANNSRWVVIKTVKDAEGNTWYDLGNNQWIMAKYTVDESSVSQAANDAETEAKN WIAWRESRGSYTARNGQCIGKYQLLAAYLHGDFSPRNQELVANNYVYGRYGSWVNAKQFW INHGWY >gi|308165933|gb|AEHO01000007.1| GENE 52 47703 - 47987 268 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309803831|ref|ZP_07697916.1| ## NR: gi|309803831|ref|ZP_07697916.1| hypothetical protein HMPREF9214_0363 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0123 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0747 [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_1194 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0580 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9214_0363 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0123 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0747 [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_1194 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0580 [Lactobacillus iners UPII 60-B] # 1 94 1 94 94 122 100.0 7e-27 MNGNGIVIILLCLAAIIVLLTEILNILIKQFPDNSVCKKIWCTSSYGEILFAIIAMIYVF VSYDTNIKFSIIFFVLSLLLLKGLHGLKQYYSKK >gi|308165933|gb|AEHO01000007.1| GENE 53 48267 - 49640 1561 457 aa, chain - ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 7 451 3 448 449 322 43.0 1e-87 MKPYNSRKLSLKEYLVVSSLLFGLFFGAGNLIFPLHLGQLAGGKWIVATIGFLITGVLLP LLSVLAISVTKSEGVFDVGKPLGVGFALVFMVLIHATIGPLFGTPRTATVSFTVGVEPFV GSNNHTLALFIFSAVFFLLAFGFSYHENHILDNVGKVLNPLFLSLLFIMFLVAFLRPLGN PMTAAATKDYVNASLINGFLQGYNTMDALAGLAFGVTVVTAVRQMGQRKESDVSKVVAKS GFVGMAAVAFIYLLLIVAGAMSLGHFKLSGDGGVAFTQIVNYYGGAFGQAVLAVLITVTC LTTAVGLVAAFAQDFHKHFPAVSYHTWLALTTFASFVVANFGLEQIIAWSTPMLMFLYPL SMVLILLSVCSPLFKRNSYVYFFVVLFTVVPALGDMVVAFPAVVSHSAFGLAVAKYREML PLAEFGLSWVVPALVGLVIGLAMYVYKDKKMSTQTVE >gi|308165933|gb|AEHO01000007.1| GENE 54 50030 - 51250 1572 406 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 23 405 1 378 378 262 37.0 8e-70 MLKAQDNGLRESIPFFIGGVTVMDEKGKLQVLCDLIKINSANGNEIEVAEYLSKLLSQHG LTAKIDAFGNKRANLLLEVGQGEKILGLTGHMDTVSLGDLTKWNTNPLEPTIIGNKLYGR GASDMKSGLAAQAIALIELYNSGELPQGRIRWIVTAGEENGTPGANRFEEQGIADDLAAL IVGESTDGDIIFAHSGSLSYRISSVGLSVHSSMPEKGKNAFDALVEFYRREKNLFDDAPF DEYLGSVKHSITVMHGGDQVNTIPDHAELLGNVRPTTAFGNDNVIKKLKQLVDQVNIDLD AKLQFELIYSYLPIETDPQSNFIKDAIEISQQSYQQFYPQHRKVNKDVFNGATDASVFIK KHHNLPVFIYGPDTWQVAHKINEYTTIPSFYATIDAYKKIIKHFFA >gi|308165933|gb|AEHO01000007.1| GENE 55 51295 - 52134 740 279 aa, chain - ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 20 279 25 285 286 257 53.0 2e-68 MKNQRNIIVTVVAVLLIIVGFFTLNRKGNSSEKNVTIGVVSQSKQDEAIWKIIRKDIKDK YGINVKIKNFTDYTQPNKALQNGDIDLNAFQHQAFLDAWNKANKGTIVSIGKTFIAPIRL YSNKYKSIKKLPKGATISLPNDATNESRALFVLKNAGLITFKKNCSKLATIKDIATNKKQ FKLKEIGAEQTARTLSDVDAAFVNNNYAIASGLKTNSAIYTEPVNKDSKQWINIICSTRK NKNNPLFKKIIKVYQTNKVKQLYKKYYGNTQIPAWDIKL >gi|308165933|gb|AEHO01000007.1| GENE 56 52529 - 54895 2467 788 aa, chain - ## HITS:1 COG:no KEGG:Apre_0464 NR:ns ## KEGG: Apre_0464 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 4 673 2 637 763 396 37.0 1e-108 MNKKNKKSLAKLGVILISATILSACGNNQGANKATKNINHSFVTKKTTYQKDKTTKVLVD SDSFKKSDIVKIIKHGDHWHVFTADGKEHITYTDPNKMSDSTSLELVNVVTLAQLKNKKV VAIKIHGNHWHVFTADGNEYLTYQNPSSMFPHIKVTKYTGHHGSRGTASITKALAKDRVV KILQHGDHFHIYTASGKEFISYSDPRGMYPHAVFGQYVGTHGQHATQKVTSKQQLHLVSV LGKKVADKNRIVKILQHGDHYHIYDAEGNESITYSDPRALYPNAVFGQYVGTHADHQQAQ NIEQLQFVNVLGQKTVDKNRIVKILQHGDHYHVYDAEGNESITYSDPRALYPDAVFGQYV GTHADHHSENDEHSTHIENNEPSTHIEDKHDDNKDAIANLKIVPVLGQKGKIDRYDIIKI LQHEDHYHIYDSQGNEGITYTNPRALYPNAKFGQYVGTHSQHNTNVEIDWPEGIDKIVDH GDHWHLYKNGQEITVVHENPKSHYPNAEYIDERPKDYSNITVENNEIFTYDEVEPEVKDG LREFLKKKDMRGIVDMEGFGDLTNETRPVYGSETDENGQPIKKDIFYFCHNGDHYHALTI KQIIQAAKAGEYGSFTARDIVAAMKWSIENKEKLVTFTVSKNIDAVKNYLKQYYHIDDEN DISSVGNQIGIYGIKADVNPVYFNVDDDFTVENGQIKSIKPLPAREEKTDQKSEADPQKE LSVENVNPTALTKVTLDSVKAFLIEKYPNSEVSAISGVLYVSKGEDEAPLQFKLTDFAIK DNKIVEKK >gi|308165933|gb|AEHO01000007.1| GENE 57 54905 - 55699 671 264 aa, chain - ## HITS:1 COG:CAC2878 KEGG:ns NR:ns ## COG: CAC2878 COG1108 # Protein_GI_number: 15896132 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Clostridium acetobutylicum # 1 255 1 255 268 147 38.0 2e-35 MLEIFDYEFMRRAFIVGMFLAIILPTMGLPILLKRLSMIGDTLAHSSLAGVAIGLCFGFD PLLASIAACIVAGLGIELIRNKLKAYQEISTVIILAASIGLAGVFMSFINNANSISAYLF GSIVTISDSEFYLVIAVSLFVIVCSYLLYNTLYLCVFDPKAAPILGINVKFINFMVTFLS AVAISISAKTIGSLIVSSLLVIPVVSAMQIARTYKKTLLLSILLSVAFVYTGLFISYFFN LKPGSVIVLISVIWLILTMIIKKN >gi|308165933|gb|AEHO01000007.1| GENE 58 55699 - 56313 273 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 175 28 206 318 109 35 8e-23 LENFSCSIEQGNFVAIVGENGAGKSTLLNLILHNLKPLSGKIKIFGDDIDQKNHYQDIAY VSQSSVQNYRNFPTTVIEVIYNHLKFLKVKEPPEKYLDLVGLTEHQNKVLSELSGGQLQR VALAAAMIKNASLILLDEPTTGIDKKFSREFFGFLQEIASSGKTIVIVTHALDDAIDFID YAIEIRNASGHILSRSDLQQLVVK >gi|308165933|gb|AEHO01000007.1| GENE 59 56362 - 57273 1030 303 aa, chain - ## HITS:1 COG:lin0191 KEGG:ns NR:ns ## COG: lin0191 COG0803 # Protein_GI_number: 16799268 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 1 300 1 310 312 190 38.0 3e-48 MKKHLFLFFTFLAIFCGCLTGCSKQQSSNNKKVIYTTFFPVTDLTKRIVGNKMEVKTIIK GNEEPHSFELKTNDMKDIANADLIIYNGAGMENFIPALKDTVKKKNKFLDLSQGLKLLEA GKGIVKAHDRVNPHTWLSVKNAYEQLDTIYRKVASMDPNNEAYYKKNLKKAQSEFKSLDN QFEKTVAKFKGKDKYFVTSHAAFNYLARDYGFKQVAVTGISPDEEPSAKQLKKIADFVKK HHIKTIFFEGKATPKVAKTLAKNTHTKTDTIYTMENLTDDEAAMGYLKLMELNMKALMRS FNE >gi|308165933|gb|AEHO01000007.1| GENE 60 57437 - 57928 475 163 aa, chain - ## HITS:1 COG:no KEGG:LPST_C0132 NR:ns ## KEGG: LPST_C0132 # Name: not_defined # Def: integral membrane protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 3 155 12 164 170 95 44.0 9e-19 MVVLAMLIALYIIFSRLLSLNIGGSHKISFTFICIALMGCLYSPYVTAISCAGADFIGCM LFPKLTYFPGFTLTAFLVGLVFGIVFSNKVNFVRILIATGLTCLIQFFVNSFWLKIICHV PYSVMLISRIPQECIMAVVMVILLSALFKLDIIQRKIKMWHEQ >gi|308165933|gb|AEHO01000007.1| GENE 61 58068 - 58436 322 122 aa, chain - ## HITS:1 COG:SPy0504 KEGG:ns NR:ns ## COG: SPy0504 COG0691 # Protein_GI_number: 15674609 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 1 120 31 150 155 138 62.0 2e-33 MTGTEIKSVRARRINLKDGYVQTYRGSAFLENVHISEYKQGNIYNHDPLRSRRLLLHKKE INHLQIIQAQQGMTIIPLKVYLKHGYAKVLIGVGQGKKQYDKRETIKRRDQDRELKSKYK IR >gi|308165933|gb|AEHO01000007.1| GENE 62 58527 - 60803 1365 758 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 10 722 6 703 730 530 40 1e-149 MPQDERVLASIYEVFRHNSQKSYTIDKLDRELHNKLHYKFTELVRGVTFLEHEKKIITDG LGKYQLNRLDTIVEGTFRANDKGFGFIRYDEVADDIFVDKTNTSFAIDGDTVKAKIIADA NPWNGKGPEGQVVEIIERGFENLVGEFIPFSDQQVATTNYLGYVISENKKLKKYKIYILK DGLTPQLGDIVQVSLKTYPSEESPEDMTAVVIKVIGNKNDPGVDIMAIVADHDVKTEWSD EALEQANQIPDHVTAADKAGRDDITQQAAVTIDGDDSKDFDDAVVLWKLDNGNYHLGVHI ADVAHYVTEGSPLDIEAFTRGNSTYLVDRVIPMLPFRLSNGICSLNEGVERLVLSCDMEI TPTGERVNYSIHPSVMKSHGRLTYSKVNRALAGDHLDELEEKYRTLRPMLVEMAKLHDIL YQKRHKRGAIDFEEPEAKIIVDKMGKPIDIVLHERGTAEKMVESFMLLANETVAEEYFRR HVPFLYRVHETPDEEKMKTFFEFVSAFGLNVKADPHDVKPSDLQQIVTKTAGTTEEAVVQ MMMLRSLRQAHYSAEPLGHFGLAAQYYTHFTSPIRRYSDLIVHRMIHEYGVGKPATELQK HFQGKLDEIAEQTSVQERRSIDTERSVNDLKMTEYMANQVGEHFDAIISSVTSFGMFIQL PNTVEGLIHISNLTDDFYRFDEKSLTLTGRGKHHQFKVGMPIKVKLINADVAQHQIDFEI YDPNTPKIKNNDHNQTKTPYRQRTSQNNRPYRKRNRQR >gi|308165933|gb|AEHO01000007.1| GENE 63 60874 - 61092 152 72 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_02310 NR:ns ## KEGG: LAC30SC_02310 # Name: secG # Def: preprotein translocase subunit SecG # Organism: L.acidophilus_30SC # Pathway: Protein export [PATH:lai03060]; Bacterial secretion system [PATH:lai03070] # 1 72 6 77 77 84 83.0 1e-15 MTLIIIVSFLIIIATLMQPQKQQDALNALSGGAVFSGQTKKRGFEALMEKITGVLLVIFF VLAIILVKLSSK >gi|308165933|gb|AEHO01000007.1| GENE 64 61226 - 62524 1937 432 aa, chain - ## HITS:1 COG:BS_eno KEGG:ns NR:ns ## COG: BS_eno COG0148 # Protein_GI_number: 16080443 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Bacillus subtilis # 1 430 1 430 430 583 69.0 1e-166 MSVITDIHAREVLDSRGNPTIEAEVYTEVGGFGRAIVPSGASTGEHEAVELRDGDKSRFN GTGVLTAVENVNGEIAKAIIGLDVTDQRLIDQTMIDLDGTPNKGRLGANAILAVSLASAR AAADELGLPLYEYLGGPNAHVLPTPMMNVINGGKHADNNVDIQEFMIMPVGAKSLHEAVR MGAETFHTLKKILKERGEFTGVGDEGGFAPNLKNNEEPFEILVEAIQRAGYKPGEDIAIA FDAAASEFYNKETKKYVTVADGREYTAEEWTSLIEDLVDKYPVISLEDPLDENDWEGWKT FTDRLSGKVQIVGDDLFVTNTNYLKKGIQKGVANSILIKVNQIGTLTETFEAIEMAKEAG YTAIVSHRSGETEDTTIADLVVATNAGQIKTGSMSRTDRIAKYNQLMRIEEALGSTAEYK GIHSFYNLHKQF >gi|308165933|gb|AEHO01000007.1| GENE 65 62575 - 63330 814 251 aa, chain - ## HITS:1 COG:SP1574 KEGG:ns NR:ns ## COG: SP1574 COG0149 # Protein_GI_number: 15901416 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 2 249 3 250 252 313 62.0 1e-85 MRTPIIAGNWKLHMNPEQTTEFVNAVKNHLPESSKVEAVIAAPALDVDALRKAAAGSNLH TSAENCYFEAEGAFTGENSPLVLKEMGINYCIIGHSERRGYFHETDEDINKKAKALLEHG VTPIICCGESLETREANKQEEWVVSQIKAALEGLTAEQVSSLVIAYEPIWAIGTGKTASS DQAEEMCKTIRETVKDLYDEATSDNIRIQYGGSVKPANVKELMAKPNIDGGLVGGASLDP ESFLALVNYQD >gi|308165933|gb|AEHO01000007.1| GENE 66 63348 - 64562 1631 404 aa, chain - ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 404 1 396 396 499 67.0 1e-141 MAKLIVSDLKDLEGKKVLVRVDFNVPIKNGVISDDNRIVAALPTIKYIIEHGGKAILLSH LGRVKSDADKKELTLKPVAERLSELLEKPVTFVPENEGKEVEDAVAAMKNGEVIVLENTR FQDIDNDFGKRESKNDPTLGEYWASLGDVYVNDAFGTAHRSHASNTGIATAMKAAGKLAA AGYLMEKEIKFLGNAVSKPVHPFVTILGGAKVSDKIGVITNLIPKSDHILIGGGMAYTFL AAQGHKIGKSLFEEDKVELAKELLAKAGDKIVLPVDHVAATEFSNDATHEVVDIDIPDNE MGLDIGPKTVEKFKEILKDAKTVVWNGPMGCFEMPNYAEGTLEVGRALANLTDAITIIGG GDSTAAAKQLGIAPKITHISTGGGASLNYLEGKELPGIACISDK >gi|308165933|gb|AEHO01000007.1| GENE 67 64671 - 65687 1180 338 aa, chain - ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 338 3 333 333 414 64.0 1e-115 MTVKIGINGFGRIGRLAFRRIMELGEKSKDIEVVAINDLTTPALLAHLLKYDSTHGTFNH EVSATEDSIVVDGKKYRVYAEPQAQNIPWVKNDGVDFVLECTGFYTSKAKSEAHLKAGAK RVLISAPAGSDLKTVVYGVNEGTLTADDKIVSAGSCTTNSLAPMVNALNKEFGIEVGTMT TIHAFTSTQMILDGPVRGGNFRAARTASANIIPHSTGAAKAIGLVIPDLNGKLNGHAQRV PVVDGSVTELVSILSKEVTADEINEAMKKYETPSFAYNDDEIVSSDVLGMTAGSIFDPTQ TMVTTAGDKQLVKTVAWYDNEYSFTCQMVRTLLKFATL >gi|308165933|gb|AEHO01000007.1| GENE 68 65744 - 66775 904 343 aa, chain - ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 3 341 2 341 348 251 40.0 2e-66 MDSDLTLLQSLVPDVFKIIRQRFLVLEQISLLAPVGRRVVAKKLGLSERNIRTETDYLKQ LHLIEINSSGMVLTEKGEITLKELAPLIDRIFNASKTELQLASKLGIDRVIIVPGNADLQ DRVWALMGEQLSAALDLLLPLGKDIITVSGGKTVANVTKHLSKRLSRYRDILFVPGRGAL GDDVELQSNTIAQAVASKVGGRFSGLYLPENLPSEAINALMQDPMISNTFTSIYNSDAVI HGIGLADNMARKRGFDAFTRSKLMDKGAVAECFGYFFDHNGHLVDRVPRVGFQLEVLDKI PHVFALAAGELKAPAIIAYMHHAPKQTWLITDEGASNKVLREN >gi|308165933|gb|AEHO01000007.1| GENE 69 67289 - 67873 612 194 aa, chain + ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 2 193 3 194 198 267 70.0 1e-71 MLVPTVIEQTARGERAYDIYSRLLKDRVIMLSGEINDTMANSIIAQLLFLDAQDNTKDIS LYINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTAGTKGKRFALPNSTVL IHQPLGGAQGQQTDIQIAANEILKSREKINSILHETTGQPLEKIQADTERDKYLTAQEAK DYGLIDEILVNKNN >gi|308165933|gb|AEHO01000007.1| GENE 70 67982 - 69238 1090 418 aa, chain - ## HITS:1 COG:TM0930 KEGG:ns NR:ns ## COG: TM0930 COG0714 # Protein_GI_number: 15643692 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Thermotoga maritima # 35 327 22 258 351 76 26.0 1e-13 MPNKKFYPYIAQGANAKQMFNIMQACIRAGVPFGLVGNPGVGKTATIEAMAKTLGRELIN LSLSTMLPEDIAGLPFPTKINIGSDKKEQMVDAACYAMPVWQQRLLHNSNAILFLDEFST AIPTTQHAFLQLVQNRRLPGSDLPFSKNVAIIIAMNPADQAGGSSLDLPIANRFAWFTFN PDFNDWATGFKQRWQSEELMSVPSFCTDEKILMARNKKIRSTIIDYLDSEKGAHQVTIVP SGMENPISSVVRRDDPAEMEVFRLAFPSARSWDNLAEIMTYIDEKDFGTIQVVINGTIGS NQGIAFYKYYVDNLKRLNIDAILKDPKSVDWKHISIDESAGIFRALIEEAANGRLDQVLE VFISIKIAGAENLLSGNRLQDIYKAEYLNKLPLATRKKVKQRYLEYFGDFLTKIANNN >gi|308165933|gb|AEHO01000007.1| GENE 71 69254 - 70750 1441 498 aa, chain - ## HITS:1 COG:TM0929 KEGG:ns NR:ns ## COG: TM0929 COG3864 # Protein_GI_number: 15643691 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Thermotoga maritima # 142 446 69 358 397 60 23.0 6e-09 MNDEFHNVLSADIQLNKEDYLKYDLEKINDRALAVRDILKSGGISKNNQKMQQNLILAYC VLAKLGITSYSIRKLSAEEMSVFQMATYKAVTAASALTGYISLLHPMVSVNYATLATDAN LRLGIGWWFFDPILDNVERGTLLLHEVMHTVLGHYELKNLDMQLVNTAGDAIINQEIEFG DHEVMRLPQNEDKSDFIIFPRTIITQKYPQGMPNNQSFETYYHALEEERQKTPVPDQNSD ICNSMSSQEESEFDKQNVEKAGEIEKELARNEALHKALDQGNKTVGRNGSAFNSFILKAL RPAKISWQKCLKNIIAKHCNTVIEGNMDYSYRRPSRRNFSNIFIRPGTISYLPKILIGCD SSGSMDEVDYRRLMSEIKEICKTVQHEKISFVTIDTKITTKQVVHKVQDIVLGAGGGTCM EKFYEYIHQLKASEKPDLSILCTDGYLGGIKEWTLLLNSIDKNIINIILITDRQGYDSFI NLYGCNTPVKNTTVISIY >gi|308165933|gb|AEHO01000007.1| GENE 72 70743 - 71687 948 314 aa, chain - ## HITS:1 COG:BS_yvcL KEGG:ns NR:ns ## COG: BS_yvcL COG1481 # Protein_GI_number: 16080528 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 309 2 307 316 315 55.0 6e-86 MGSYASEVKKELTGLSVHPEHAKAELSAFLRMNGVLNLNQHHLSLNIVTENPAIARRIFS LIKIAYGIEPALIVSKKMKLKKNYQYLVRLQNNVKFVLHDLDIIDESFGVLTGIPSKIQQ SEQLAMSYLRGAFLAAGSINNPETSRYHLEIYSLYQLHNDDLMNLMNKYFYLNAKQTKRR SGYIVYLKEAEKIGDFLHIIGAVNAMLAFEDLRIMRDMRNSVNRLVNCDTANMKKTASAA AKQVEEIKLIDKKIGLDKLPEKLAILAKFRLQNPELTLKEVADKVPDGPISKSGINHRFQ KIKKIAQNLGEKHE >gi|308165933|gb|AEHO01000007.1| GENE 73 71687 - 72721 1117 344 aa, chain - ## HITS:1 COG:SP1565 KEGG:ns NR:ns ## COG: SP1565 COG0391 # Protein_GI_number: 15901408 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 15 332 2 320 325 340 52.0 2e-93 MSFGENKIVKVIKARRPKIVVIGGGTGLPVILSALKQQNAEITAIVTVADDGGSSGVIRD YINVVPPGDIRNVLVALSDISQEEKEIFQYRFSSDDSFFAGHAIGNLIIAALSEMQGNIF DAVQSLSRMMHVDGRIFPASNEPLTLNAEFMDGTTEKGETEITSQHKKIKRVWVTGAKNN ARPEAVLPVLAAIMQADAVVLGPGSLFTSILPNLMIDDLGEAIRQTKAEVIYICNIMTQR GETDNMTSAEHVAIINRHLGGNYIDTALVNSAAIDMTKFNPADYDEYLRPVENDFKGLRK QNCRVITADFINQHSGLVFHDGKKIATEILNLALEAYARRKQEK >gi|308165933|gb|AEHO01000007.1| GENE 74 72734 - 73609 950 291 aa, chain - ## HITS:1 COG:SP1566 KEGG:ns NR:ns ## COG: SP1566 COG1660 # Protein_GI_number: 15901409 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 287 1 288 296 310 53.0 2e-84 MNVRKKQLLIVTGMSGAGKTVTVKSLEDLGYFVVDNLPPELLSSFWELINSSNDFDKVAV VIDLRVKSFYKDLVVEINSLEDNSKAHATILFLDASDDVLVSRYKETRRLPPLAQSGRLL DGIKKEREALESIKNLSNYIIDTSKLTAKDLKEQLVKKFSDDQTHVFSIEVMSFGFKYGI PIDADIVIDVRFLPNPFYIPQLKPFTGLDRKVFDYVMEKEQTQIFYHKFLDMLFTAIPGY IEEGKEKLTIAVGCTGGQHRSVSIAIQLAKDLSKKYPVDISHREISRYIRK >gi|308165933|gb|AEHO01000007.1| GENE 75 73661 - 76477 2731 938 aa, chain - ## HITS:1 COG:SP0186 KEGG:ns NR:ns ## COG: SP0186 COG0178 # Protein_GI_number: 15900123 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pneumoniae TIGR4 # 4 936 3 942 943 1241 65.0 0 MKNDVIVMHGVREHNLKNIDLTIPKNKLVVVTGLSGSGKSSLAFDTLYTEGRRRYVESLS SYARQFLGQMDKADVDSIEGLTPAISIDQKTRSHNPRSTVGTVTEINDYLRLLWARVGKP ICPHDGTLIESQSVDQIIKQILALAPKTRIQILAPIIRQKKGEHKEVFKRIQRLGYVRII VDGVLHDINDELVLDKNKQHSISVVVDRLIIKEQIKSRLTDSVETALRLTDGYLDVDIVG DKLMKFSEYYACPSCGFTVGELEPRLFSFNAPFGACSECDGLGMKIAVDPDLVIPDPEKS LNQGAIAPWCNSKYYTDMLLQVAATFKIPTDRPFKKLTERQKRIILYGDDKVIKFHLTGD FGVNDVEQAFEGVLNNVDRRYHHPISKFMQDVMSKYMTELKCTKCQGRRLNEIALSVKIN GYDLATVSDLAITDELAFFESIVLSENDMMIAKPILKEVKARLTFLIDVGLGYLTLSRSA GTLSGGESQRIRLATQIGSNLSGVMYILDEPSIGLHQRDNARLIKTMKKMRDLGNSLIVV EHDSETMQQADYLIDIGPGAGIYGGKVVAAGTPQEVMANPDSLTGQYLSGKKKIAIPDHR RILNHGVIKLIDVSENNLKHIDVQIPLGGLVLVTGVSGSGKSTLVNLVLKRAILQKLGLM TKKPGKYKKLLGWDQIEKVIDVDQSPIGRTPRSNPATYTGVFDDIRALFAQTNAAKMRGY TKARFSFNIKGGRCEACHGDGIIKIEMNFLPDVYVPCEICHGTRYNSETLEVKYHEKNIA DVLKMSISEANEFFANIPKIKRKLQTIMDVGLGYIQLGQPATTLSGGEAQRMKLASELQK TSTGKNLYILDEPTTGLHVDDIKHLVLVLQRLVDEGNSILIIEHNLDVIKCADWIIDLGP EGGAAGGEIVAQGTPEDVAKVEKSYTGQYLKPILNQNL >gi|308165933|gb|AEHO01000007.1| GENE 76 76505 - 78502 2008 665 aa, chain - ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 664 1 659 662 879 66.0 0 MIRKQKDKKFELVSKFQPAGDQKQAIDQLCDNFKQGVKEQILHGATGTGKTFTMANLIAK LNKPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAI NDEIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRD LVNIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEIL GKCEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIE MMQEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDR RRKQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDKVVEQIIRPT GLLDPIVEVRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYL HSEIKTLERMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLV QMMGRAARNENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDI ISHTKDVDQKDKQINDFADLNFDELSAKQKDQMIINLTEQMKIAAQKLDFETAATLRDAI IDLKK >gi|308165933|gb|AEHO01000007.1| GENE 77 78560 - 79684 1170 374 aa, chain - ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 359 200 558 572 310 44.0 3e-84 MIGEDVDQAYLKELATVNLNSRLINKNADKIKIIYTPIHGAGKVLYDRAFRQAGFKNIIP VVSQSIIDPEFPTTIKPNPEFKQCFDEGIKLANDLGADLIIATDPDADRMGACVRTSDGS FQVLTGNQIATLFINYLLVNLKAAGKLSSDYELITSIVSSALPFKIAQDYGIKTKHVLTG FKFIGEEIDRMSTQNDGHFLMGFEESYGYLFKPFTRDKDAMQGALMLAEVACYYASHNKT IFDGLQEIWNKYGFAYEVTSALEMPGLGGQEKMKLLMDKLRKDPIKEIMGQHVTKTQDFL LQTESINGQMSKLEGFTQSNVLKYCLEDNTWLALRPSGTEPVVKVYVGVNKDNFSDAKQA AEDYTVAIEHILFK >gi|308165933|gb|AEHO01000007.1| GENE 78 79674 - 81230 1519 518 aa, chain - ## HITS:1 COG:lin2621 KEGG:ns NR:ns ## COG: lin2621 COG0492 # Protein_GI_number: 16801683 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Listeria innocua # 3 303 6 306 319 340 55.0 5e-93 MIKKYDVIIIGAGPGGLTAALYASRANLSVAIVDKGLYGGQMNNTGAIDNYPGFADITGP QLSEKMYQSAMKFGAEYFYADVQQIIVEQQIKKVITEKDEFHAPAVLIATGAVHKHLNIP GEDTYQGRGVSYCAVCDAAFFRNEEIAVIGGGDSAIEEGLYLAQTAEKVTIIHRRNELRA QPVLQKMAFANDKIDFIWNANTEEILGDGSRVTAVKYYDKNAEEQKILNVSGVFIYVGVQ ANSMAFSNLGICDEQGWIITDEHMQTKVEGIFALGDVRQKDLRQIATAVGEGSIAGQAAY HYLQTLKIKSEDKYMGAKDRLAQWLGNERLNSDMRSELMELKKNSAWVEDAFGQDINFGT AGMRGLLEPGTNRINFYTVGRVTEGLAKLIEENGSAAIKRGVVIAYDSRYYSREFATHAA QILGNHGITVYLFDNLRPTPELSFAVRYLKTFAGINITASHNAKQYNGYKVYGEDGAQMS PDNADRLFAFAQKVTDIFSVTCASVSTLRQKNNLTYDR >gi|308165933|gb|AEHO01000007.1| GENE 79 81250 - 81615 370 121 aa, chain - ## HITS:1 COG:lin2050 KEGG:ns NR:ns ## COG: lin2050 COG0240 # Protein_GI_number: 16801116 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Listeria innocua # 1 118 218 334 338 134 57.0 4e-32 MTRGLAEITRLGVKCFGADRLTFSGLAGIGDLIVTCTSSNSRNWRCGKQLGEGKPLQEIL DNMGQVVEGATTVKAVHELCEANDVDMPISEAIYRVLYENSDVDLEIKKMMGRSPKPEIR L >gi|308165933|gb|AEHO01000007.1| GENE 80 81647 - 82270 707 207 aa, chain - ## HITS:1 COG:SPy0226 KEGG:ns NR:ns ## COG: SPy0226 COG0240 # Protein_GI_number: 15674414 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 3 195 5 194 338 187 50.0 1e-47 MAKISVLGNGSWGSVLGSMLADNGNDVILFGNIAAVNQEINEKHTNEHYMKNWSLNESVK ATDDLELALKDAEIVLFVLPTKAVRIVAKNVRKVLDKLGTKPLLVTATKGIEPGSKKLIS EILTEEIYPNDLDKIVAISGPSHAENVAQKDLTAIACASTDIKNAELVQKLFSNNYVRFY TNPDLIGVEVAGAVKKCYCDCCRYISW >gi|308165933|gb|AEHO01000007.1| GENE 81 82307 - 83140 851 277 aa, chain - ## HITS:1 COG:lin2625 KEGG:ns NR:ns ## COG: lin2625 COG0682 # Protein_GI_number: 16801687 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Listeria innocua # 5 267 8 267 277 249 48.0 4e-66 MNLIINPVAFRLGSMSIKWYGILMASGIVIALLMAIVEGKKRQIMPEDFSDFLLWGVPIG FVGARLYYVIFKWDYFAQNPGQIFAIWNGGIAIYGGLLTGLVVLILFCNSRFLPPLLMLD IIIPGVMAAQIIARWGNFINQEAHGACVSLSFLQSLHLPDFIIKQMYISGHYYQPTYLYE SFFNLIGLIIILALRHKKGLYKRGEVFFSYLIWYSVVRFFVEGMRTDSLYLMNTIRISQL VSVILFIVAIVLLIYRRKYKHVKWYLDGSGLKYPYER >gi|308165933|gb|AEHO01000007.1| GENE 82 83156 - 84094 1047 312 aa, chain - ## HITS:1 COG:lin2626 KEGG:ns NR:ns ## COG: lin2626 COG1493 # Protein_GI_number: 16801688 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Listeria innocua # 29 310 27 308 312 338 55.0 6e-93 MSDMVKISELLHDNPTLTVKQGEDYLEHRVVSVSDISRPGLELTGYFDFYPKERIQLLGK TEISYSTHLDHDLRTNVFRRMATDITPCFVISRGLPIPSELLEAAEQAKVPVLTSNMPTT QLTSVLMQYLDEHLAPRKSIHGVLVEIYGMGVLIMGNSGVGKSETALDLIKRGHRLIADD RVDVYQKDDKTVVGEAPAILKHLMEIRGIGIIDIMSLFGAGAVKEKSEIQLVINLQNWDP KENYDRLGIAEKYINIFDVAVPQLTVPVKVGRNLAIIIEVAAMNFRAKKMGYDASEKFER NLSALIADNSQK >gi|308165933|gb|AEHO01000007.1| GENE 83 84098 - 84394 156 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501055|ref|ZP_05743957.1| ## NR: gi|259501055|ref|ZP_05743957.1| hypothetical protein HMPREF0520_0565 [Lactobacillus iners DSM 13335] hypothetical protein LineA_00635 [Lactobacillus iners AB-1] hypothetical protein HMPREF9213_0157 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_0828 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0782 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0481 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0311 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0632 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9216_0774 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0522_1229 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0520_0565 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_0157 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_0828 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0782 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0774 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9217_0632 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_0311 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0481 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF0522_1229 [Lactobacillus iners UPII 143-D] # 1 98 1 98 98 80 100.0 3e-14 MKFKYFVIAILAFIILNLILLLNIIYKLLTFLFPIFFIIDILIIVFGALSIYIAIHKAKK KYSSYIKKFYYNDNCKQASTSHRKEARNVTIDDVDKED >gi|308165933|gb|AEHO01000007.1| GENE 84 84411 - 85409 1007 332 aa, chain - ## HITS:1 COG:SA0709 KEGG:ns NR:ns ## COG: SA0709 COG1186 # Protein_GI_number: 15926431 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Staphylococcus aureus N315 # 1 329 1 330 330 355 53.0 5e-98 MADDTFWNDQTNAQKIIEATNYMREKVDKYQTLSAALADAKTAVELYNMEPENDMLMEIT AEVEKLKNEFNNYELHLLLSGKYDDHNALLEIHSGAGGTEAMDWANMLFRMYQRWCDSHN LTFEVDDFQVGDEAGLKSVSVRVQGNNAFGLLKSENGVHRLVRISPFDSAKRRHTSFASV EVIPEIDKSINIEINPDDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTSSQAQRSQ FQNRETAMDMLRAKLFKLEEDKKRKQTEALKGNQKEINFGSQIRSYVFHPYNMVKDHRTD YETSDTIGVMNGNLDPFIYAYLQWMLSQENPE >gi|308165933|gb|AEHO01000007.1| GENE 85 85569 - 86702 1165 377 aa, chain - ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 371 412 781 839 433 61.0 1e-121 MDSKFEAVVEDIQTRHAKGQPVLVGTVAIESSERLSKMLDQAGIAHAVLNAKNHAKEAEI IMNAGQRGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQG DPGTTRFYLSLEDDLMKRFGSERVKAFLDRIAGSDDEKVIESRMITRQVESAQKRVEGNN YDTRKQTLQYDDVMRTQREIIYGERMQVITEEHSLKEVLIPMMQRTIAHQIDLYTQGSKN QWRTDQIRDFIASSLASEEDAKKINLKNITVDELKEQLYEIVDDNYAEKERQLVDPEQML EFEKVVILRVVDDRWTDHIDAMDQLRQSISLRGYGQLNPLVEYQEAGYRMFEEMISNIEY DATRLFMKARIVPNMSR >gi|308165933|gb|AEHO01000007.1| GENE 86 86749 - 87969 1348 406 aa, chain - ## HITS:1 COG:L0334 KEGG:ns NR:ns ## COG: L0334 COG0653 # Protein_GI_number: 15672097 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Lactococcus lactis # 1 399 1 400 865 535 68.0 1e-152 MTNILKKLYDNDKRDLKKFEKIANKVEKLADHFANMTDEQLQHMTVEFRDRLAKGESLDD ILPEAFATAREGAKRVLGLYPFHVQVIGGISLHYGNISEMMTGEGKTLTATMPVYLNALT GQGVHVVTVNEYLSARDESEMGQLYKWLGLTVGLNLNSMSSDEKREAYSCDVTYSTNSEL GFDYLRDNMVVYKEQMVQRPLNYAIIDEVDSILIDEARTPLIISGQAEQANNEYIRADRF VKTLVEDKSDDNMDDNEDHGDYKIDWPTKTISLTNQGISKACEHFGLSNLYDIDNQVLVH HLDQALRANYIMLNNIDYVVQNGEVLIVDSFTGRVMEGRRYSDGLHQAIEAKEGVKIQEE SKTQATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMTSYYDSN >gi|308165933|gb|AEHO01000007.1| GENE 87 88132 - 88689 727 185 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 1 185 1 185 185 284 75 2e-75 MLKYNVRGENIEVTDALKSYVEKRLEKLEKYFEIESDVIAHVNLKVYSEKSSKVEVTIPL PYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTRINRKSRERGMRDFFYDTDVASGATE EKAVSGFDIVRNKHLNLKPMDAEEAILQMNMLGHNFFIFEDADTNGTSIVYRRNDGRYGL IETNE >gi|308165933|gb|AEHO01000007.1| GENE 88 88934 - 89173 296 79 aa, chain - ## HITS:1 COG:no KEGG:LJ0844 NR:ns ## KEGG: LJ0844 # Name: not_defined # Def: ComF operon protein 3 # Organism: L.johnsonii # Pathway: not_defined # 1 74 91 163 223 92 59.0 4e-18 MVAYKRYGHYVLFNVLAELIKNQLPLADRYIPIPSSPEHLQQRGYDTIISIYEPLCNLSP VLIKKAGGEAQGEKIKMKD >gi|308165933|gb|AEHO01000007.1| GENE 89 89699 - 90715 679 338 aa, chain - ## HITS:1 COG:SP2208 KEGG:ns NR:ns ## COG: SP2208 COG4098 # Protein_GI_number: 15902015 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Streptococcus pneumoniae TIGR4 # 6 329 9 335 432 209 37.0 7e-54 MNKLAGRQWINNQDNDIINSKVKKVPAIIDNICQRCGQLVIYRLPTGHKYCHSCIGLGRV SENDFLCRMSRVGDAVKNETHLLTWKGDLTDRQAKVSADLLHALQNNQDHLVHAVTGAGK TEMLFKAVEYFLQQGKYVALATPRLDVVNELYPRMCRAFANTKIGKYHGKMAQDPDNEPF IICTTHQLLKYYQAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDML TKVKNGEMGYSLLQQRFHGGLLAVPEEYLFWRKYISGESLHPFLIKVLNEIINSGKPLLV FVPRIAELGLYQTILQKKYSQLVIASVHSSDKKSTTKS >gi|308165933|gb|AEHO01000007.1| GENE 90 90760 - 91425 443 221 aa, chain + ## HITS:1 COG:lin2660 KEGG:ns NR:ns ## COG: lin2660 COG1739 # Protein_GI_number: 16801721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 6 210 3 207 211 173 44.0 2e-43 MTEKPEKYLTIKENGTHELVIKKSRFICSMARTNTVEEAEIFVKKITNLYKDATHNTYAY TIGFDNTCVKACDNGEPSGTAGIPELKALQLMNLNNITAVVTRYFGGIKLGAGGLIRAYS NSVTQAAENIGVIKCILQKKISFSIQYKHLDKILYFLRQNHISIFKQEYTTDINLTVLLD SSDIDKFEQDINNILAKHVEFSIGQDLYNEILLTDFDYHNQ >gi|308165933|gb|AEHO01000007.1| GENE 91 91472 - 92608 1052 378 aa, chain - ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 2 359 12 395 443 320 46.0 2e-87 MFQIIIKIFSLVIISVLITPFIRKLAFVLGAVDNPNARRVNKKPMPTIGGLGIFVSFNIG EFVLLRSQFPTHELFSILLASSVILLTGLIDDILELKPKQKMLGIFIAALIIYFLAGIRV NEISLPFMSPINLSWWSLPITVFWILALTNAVNLIDGLDGLATGVSMISLSTMGIVGFFF LHGWQNYVPLMCIMLATCLLGFLPYNFHPAKIFLGDTGALYIGFMISILSLKGLKNVTFI SLLVPIIILGVPLTDTIFAMIRRKLNKKPITVADKHHLHHQLMRMGLSHRQTVLAIYGIS LLFSFISLVFISSPAWGIWPLMIGLLFALELFVETIGLLGDKFKPLLHFIQNYINKMHRS DPQVGISHFSIKKDEHKD >gi|308165933|gb|AEHO01000007.1| GENE 92 92703 - 94334 2130 543 aa, chain - ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 62 543 39 520 520 474 59.0 1e-133 MQNNYLSFVAIVIFSILISGVAGYCYRKHKWEQAAENAKNDAKHIIENARLDIQSAREKL LTEKQALQEMKKHVADLKKEKILEAQEEIHRYREKVENELNQRRKEVSRQENRLLQREDA IDRKDGMLDQKDCQLTQRENQVKELQAELSEKHQLADALIHQREEKLYEVSRLSVEDAKK IILSELSDKLVAERAALVKESNEQAQAKAEHYATKLIVEAIQSSAADTVSENTVSVVNLP NDDMKGRIIGREGRNIRSFEAMTGIDLIIDDTPDVVVLSGFDPIRREIAKRALENLIKDG RIHPARIEETVDRARKEVNDDIYEAGEGALMELGIHKMHPELVKILGRLKYRTSYGQNVL SHSIEVGKLTGVMASELGLDEKIAVRAGLLHDIGKSIDHEIEGSHVEIGVELARKYHESE IVINAIAAHHGDVPKMSFIAELVVAADTISSARPGARSESLENYIRRLEQLEKISKGYPG VKQAYAIQAGREIRIMVEPDKVSDDQIVLLARDIKNQIENEMEYPGNIRVTVIREKRAVD IAR >gi|308165933|gb|AEHO01000007.1| GENE 93 94418 - 95455 1028 345 aa, chain - ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 4 340 2 340 348 477 73.0 1e-134 MAKDEKKAALELALKKIEKNFGKGAVMRMGEKVDTKISTISTGSIALDTALGVGGYPRGR IIEVYGPESSGKTTVALHAVAEVQKNGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPN TGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG NISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRKSEQIKQGSDPIGS RVKIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMAVDKDIVNKSGAWYSYGDDRIGQ GRENAKQYLEEHPDIFREINDKVRQAYGIDNKESDEDSSEDTEQE >gi|308165933|gb|AEHO01000007.1| GENE 94 95578 - 96156 296 192 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 180 484 661 904 118 38 2e-25 MNLPNKLTTLRIFMIPVFILLLIFQWPAGFLLLGSTKIFWCNLIAAIVFALASFTDYLDG HIARKRGLVTNFGKFADPLADKMLTMTAFVFLITLNNSQHTYAPAWVVAIIVCRELAVTG LRLLLAENKGQVLAAKMPGKIKTTTQMLAIIFLLLSDIYYIGTIFLYICLVFTIYSGYDY FKNSWHIFKGSM >gi|308165933|gb|AEHO01000007.1| GENE 95 96159 - 97235 1273 358 aa, chain - ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 187 1 191 311 104 36.0 3e-22 MSDIGDKLKNARKANGMTIEDIEKITKIQRRYLYAIEENQFDQLPGDFYVRAFIKQYAQV VGLNGKELLDEYHKEVPEATPEKYVENSIDNKSQEVRKTTNNKKGLWKQYIPIAAAIIAF FVTVCLIYLIYAHFISNTNQKSINQVDNVTVKSSNEESQKKKKQRVKHKKKATSDIKLEK LSDTLYKVKKMGNKRTLVVKTGSTAVFARIFIDGRSVWHGVLNADDAHQVKIPHNVGNVT VFFANTSSAELIIGGKKLNITNKTMPNAARTITFLFAHKNAVKTNEKNLVKNKESETKQA EQNKTNNQADTKNENINKQENKNTTPQNKQPVQHSQQNETNKQNQQRDQGQAAGGNSR >gi|308165933|gb|AEHO01000007.1| GENE 96 97171 - 97332 118 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSSIVIPFAFLAFFNLSPMSDILTLIPLSFTEKYTKTYSKQTRFTTNISVLPI >gi|308165933|gb|AEHO01000007.1| GENE 97 97344 - 98567 1126 407 aa, chain - ## HITS:1 COG:BS_ymfH KEGG:ns NR:ns ## COG: BS_ymfH COG0612 # Protein_GI_number: 16078749 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus subtilis # 13 402 8 409 415 122 25.0 9e-28 MMEENLISKTYDSGFVANIILKPGFASKFMGIVVDFGGSDPQEISGGAHFLEHKLFAKKY GDIALKFERLGADSNAYTGFNETMYYAEFANHWPQILPLLFELVGEPYFTVDNIDQERKI ICQELATAKDDPEWYLIHNLMSNMFPQTMFTHDIVGSEEDLAKIDISFLNKIYKKYYCSN NMRFIACGDFSPSQVQKIFTLVNKMQKKYINCAPKPKIAVQTIDSMATDEQITNNKSKNI HVGVAIKLPDLNKFTSNALLATDVLEMLIDAHFNSNNIWLSNMQLQNIINDQPDVDIYNT REGSFVIITALSRYPQKLVSAIKHELFRGHMSAELIELNKKEFLANYLRLTDDLNSYAQQ MAGTLLHGRSLAQIIEEVVQMNNSDMVSLYQDILAKSSIYSCIMSNR >gi|308165933|gb|AEHO01000007.1| GENE 98 98564 - 99793 1174 409 aa, chain - ## HITS:1 COG:SA1121 KEGG:ns NR:ns ## COG: SA1121 COG0612 # Protein_GI_number: 15926861 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Staphylococcus aureus N315 # 8 408 10 415 421 63 20.0 7e-10 MRSKDLGNVVIEQNNKFKTGCIGCFFRLDLTPKNITISTLLAEVQSLLSEKYNTINRQSK RLSSLYDASLQIFPEINGNSIVMSYMLNFIEPREILDPEYDYAKIMETFFSIVHRPLIDE KVVNLAKSTLHSNIRDFFELPENRALHQFMKLWFKNQPNYQYVNVVNRDILDQLSLEDIQ DFVKLLFKSPLMIYGQVADTNLFNKIGHSYFNIFKSKADFVNPQLVVDRDIDTFDESSDA QYEQAQVLMGYFYNHIQSMPRPWIGPLIMSYYLANTESSILFKKVREQLGATYGVDAFND ENHSLLLIRTGVNKNQVKQVKEIIQGCLSDLVCGLVDQEAFDHSKQLLINNFNSYGDIQE SMMMKAVTENLIGSFSTIPNMIKLIKDYTVNDLINLAKTMQLNGSYCLL >gi|308165933|gb|AEHO01000007.1| GENE 99 99783 - 102047 1976 754 aa, chain - ## HITS:1 COG:BS_spoIIIE KEGG:ns NR:ns ## COG: BS_spoIIIE COG1674 # Protein_GI_number: 16078743 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 16 754 18 784 787 590 45.0 1e-168 MPRKNTSISKVKKEKLEWVITGLILAVLVLFSCADFGLLGNQATNLVRLFFGDAHYLASA IIGVCALVMIIYNQPPHLGKKRTWGLIVFTIALTAWCSSLLFQKLMLQHDYMSIFLTRIG QEFLHGRDSMSVGGGLIGTLFCQIFNYLFGSYGSKFIEGLLIVTGLLMFFDVKFRTIVKK FQTLSKFFIAKNKDAGILLKDKYTDLIENYHDQHKEKQDFPNIGDLDAPKNEQLPEQDPV DVVVDKANDLSNDNEISELAHDLVKKDDKNSLGRLDYVYPSLDLLDAVPNTDQSSDSKLI KQNTLTLENTFSSFGVSVIVKKAVLGPTVTRYEVQPAVGVKVSRIVNLTDDLALALAAKD IRIEAPIPGKPFIGIEVPNKVASTVSFREVMQKQENKAKQEVLSVPLGKNVTGQIVSADL RKMPHLLIAGATGSGKSVAINTIITGILMKAHPDDVKLILIDPKMVELSVYSGIPHLLIP VVTDAKLATSALRKAVREMERRYQLFAAGGVRNIGEYNEKVTLNNQNKANSVMELLPYIV VIVDELSDLMMVAGREVEDSIVRLAQMARAAGIHMILATQRPSVDVITGLIKANVPSRIS FAVSSGIDSRTILDQVGAEKLLGRGDMLYLPIGASKPERIQGAYINVDEVERVVDWVKKQ QATEYDQKMIPSDSEDAENDNSEQDDTDDEFYQQAVDLVRQQQTASVSLLQRRFRIGYNR AARIVDAMEKNGIVGPSTGAKPREVLLPPLKDEE >gi|308165933|gb|AEHO01000007.1| GENE 100 102063 - 102470 593 135 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1345 NR:ns ## KEGG: LGAS_1345 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 135 1 135 144 181 65.0 1e-44 MKFKKMTPVTTEHFHFDVNEEEKVKNEVNVSLRQVYHQPEGQEADEGKDGKYFQLAVIFD VAPAPGEFSVSGLITQIVQFVDYFGDGTDLNPADYQLVSRPLVEEIETLIYQLTQVIFDE PLNITFKSNFDQLKR >gi|308165933|gb|AEHO01000007.1| GENE 101 102481 - 102993 575 170 aa, chain - ## HITS:1 COG:L161988 KEGG:ns NR:ns ## COG: L161988 COG0219 # Protein_GI_number: 15673131 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Lactococcus lactis # 3 169 2 169 169 195 54.0 3e-50 MTNHVVLYEPLMPANTGNIARTCAGTDTVLDLIEPLGFSLDDKHMKRAGLDYWDKVKINK HDSLEDFLATLQANDEMYLISKFSSKSYTDIEYTDPTKNYYFVFGKETTGLPKTFMREYY ERNLRIPMSDHIRAFNLANSVAIVLFEALRQQGFPHLEQSHHYPKDKLKD >gi|308165933|gb|AEHO01000007.1| GENE 102 103094 - 103639 475 181 aa, chain - ## HITS:1 COG:SP1505 KEGG:ns NR:ns ## COG: SP1505 COG0628 # Protein_GI_number: 15901352 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pneumoniae TIGR4 # 1 181 198 378 388 159 42.0 2e-39 MLKDGKKINPYLTSFMPPRLQNVFSKLLHDMNIAVSSYVRGQLIVAFWVGVMFAVGYTTI GLKYGLTLAILAACLNLIPYFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFI SPLVMGSKMKMNPVTTILLLIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKNSSLY K >gi|308165933|gb|AEHO01000007.1| GENE 103 103633 - 104235 301 200 aa, chain - ## HITS:1 COG:SPy1011 KEGG:ns NR:ns ## COG: SPy1011 COG0628 # Protein_GI_number: 15675014 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pyogenes M1 GAS # 1 198 1 197 393 87 28.0 2e-17 MELKNKKDNAKSIFNSWIVNNRFSIFLLNTLLLFLTIFIFNKIAFLLTPVLTFVNAIMPA VILAGVQYYLMNPIVDCLEQKYHIPRIVTILALFIVVLIILILIINTLLPVIEAQTKSLI DHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILFNTGKASFNLFLENLFGAV NVISMLIVTLLTAPFILFLC >gi|308165933|gb|AEHO01000007.1| GENE 104 104245 - 104625 515 126 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1348 NR:ns ## KEGG: LGAS_1348 # Name: not_defined # Def: glucitol/sorbitol PTS, EIIA # Organism: L.gasseri # Pathway: Fructose and mannose metabolism [PATH:lga00051]; Phosphotransferase system (PTS) [PATH:lga02060] # 1 126 4 129 129 156 60.0 3e-37 MKWMATIQKIGVEAISKNENMVILFNETANEKLSRVAVIQKFDKETPVSSFICKKDDTVT IDGETYLVLHVGRMVADNMHAIGHCVLFFVDKLPEKTLHNAIYLQKDDEEPMPQFKQGDW ISYEHR >gi|308165933|gb|AEHO01000007.1| GENE 105 104761 - 105780 1033 339 aa, chain + ## HITS:1 COG:L11851 KEGG:ns NR:ns ## COG: L11851 COG2706 # Protein_GI_number: 15674136 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Lactococcus lactis # 2 338 4 341 341 257 39.0 3e-68 MKVLFGGYTDHASQGLYEAFLDQQNPNPSITNLKNIIQLQRPTYFQTDGSLLFTISQNGK QAGIASYRLIGQNYVQIDAFYHPGAAPCYLALSKNKKLIYTANYHLGTLSIFQYDEQGHL QFISSCQHTGHGKLKEQDAAHPHFFNQTPQGNLVSCDLGLDRLDFYTFDGQQLKHVANYQ MEAGFGTRHVRFSVDGHYMYVVGELSSKVNVIKIDETNWNFAEIDSVKTIPESYSEHNGA AAIRISNDDKFLYVTNRGHDSIAIYRILANHHLDLIQRIPVYGAFPRDFNFNSQQNLLIV ANQNSNNATLYKRNQKLGTLVPIQKDFYVPEPTRVIILD >gi|308165933|gb|AEHO01000007.1| GENE 106 105789 - 106622 743 277 aa, chain + ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 3 273 1 278 284 265 52.0 5e-71 MLIDIVKAIILGIIEGITEFLPISSTGHLYLADYLVKLNQPSSFINMFMVVIQLGAILSV ILIYFDKLNPFSKNKNKQKRKETWNLWFKVVVAVIPAAVIGLPLNDWLEAHMSTWPVIAS TLIVYGILFILLENYCQHNQANITKLGSLSYQMAILIGCFQVLSLIPGTSRSGATILGAL LLGASRYVSTEFSFFLAIPTMFGASLLKLVKFFAKGHSFHGDQLIILLVGMLVSFLVAYA SIKLLLKFIKNHNFKSFGWYRIALGIIVILAGLSHLI >gi|308165933|gb|AEHO01000007.1| GENE 107 106747 - 107586 242 279 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 50 279 40 265 285 97 35 3e-19 MPSLDMSMTKNADFYKLVYREKRPQKVADFLLTKGFSKRSLINCRHRGGNVLVNHRRRYN NYLLHDGDEVIFILGKEKPNATLKFSNLPIAIVQETANYLIVNKEADLLTIPSKNEDNDS VVGRLLHYLNPDALLKIKPHIITRLDRDTSGLVLVGKNAVAHARFNVSDKQRTIKKYHAI VHGNFSPSQLQGVIDAPIGKKDDPIKRYIMEGGKNSVTKYRVIKQVAGASLVELQLLTGR THQIRVHMQYLGHPLFGDHLYGVEDDFPRQALHCFFISL >gi|308165933|gb|AEHO01000007.1| GENE 108 107558 - 108364 788 268 aa, chain - ## HITS:1 COG:SP1098 KEGG:ns NR:ns ## COG: SP1098 COG0061 # Protein_GI_number: 15900966 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 264 7 268 272 265 51.0 5e-71 MKVAIVGNEQVKTQAVVKSLKRLLSQKQIDIDVENPDVVLTVGGDGTLISAFHKYENLLD QVRFIGIHTGHLGFYTDWRNFEIDKLVENLADKQPSTASYPLLELLITDKDHHKEKLLAI NEATIKRLSKTLKADVYIRDQFFESFKGDGLCVSTPTGSTAYSKSLGGAVIHPRLKALQM TEIASINNRVFRTLSSPIVISPDEWITIKPEINDDDPCVITVDGNKYNHSHIEKIEYRIS QHVIRFDKFQHTHFWNRVEDAFIGHEHD >gi|308165933|gb|AEHO01000007.1| GENE 109 108364 - 108990 628 208 aa, chain - ## HITS:1 COG:SP1097 KEGG:ns NR:ns ## COG: SP1097 COG2357 # Protein_GI_number: 15900965 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 3 200 4 201 223 241 60.0 1e-63 MQDWDLFLWPYREAVSELKIKLRALRESYLIKGEHSPIEFVVGRVKTVDSIKEKMERRVI PSDVIETDMQDIAGIRIMCQFVDDIYQVVELLHNRHDMHVIEERDYIQNAKPSGYRSYHM VIEYTLFLPDGPKNVIAEIQIRTLAMNFWATVEHTLNYKYQGKYPDDVSKRLKSAAEAAY QLDEEMSSIKDEVREAQRIFTQTKGKEQ >gi|308165933|gb|AEHO01000007.1| GENE 110 109068 - 109682 732 204 aa, chain + ## HITS:1 COG:L164461 KEGG:ns NR:ns ## COG: L164461 COG4116 # Protein_GI_number: 15672342 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 167 1 159 197 59 33.0 4e-09 MSKNIEIESKILLSQKLYQQIITSFTKKAKFEQSNYYFDNQQQTLKKDAISLRIRLYHDH AEQTLKVNPSHKKQNNFQEVIEINDDLNLAEAKYLVNQAQQIMTTGQIANYLQQNYNATL ISTLKPQTWSQTNRTLLDGPYHCELTLDKTCYPDGYSDYEMEIENPDPATIQKVLDQLKE QFNLTYDDDQINQSKIKRAYLHKK >gi|308165933|gb|AEHO01000007.1| GENE 111 109747 - 110364 471 205 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1382 NR:ns ## KEGG: FI9785_1382 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 172 1 175 201 142 41.0 8e-33 MFELFFFVNPIGGTCHECEKIAFHTMQQYNKKFNYHLIPMASMPSIIDALKNNKGNYDLN LFNQCSGDTFNAIKDFHSIKLLKGNKLAKQFVLNLQEMVNIQKCKYSEELVLQLINNFDI SAKTFKEMRQSEYVNMSIDEDLKLINTFNIKVTPTIIIYNYAKDEAGYLFEGKLEINCLK KMFQKPQPQQNKKIALSLHVLKNIT >gi|308165933|gb|AEHO01000007.1| GENE 112 110357 - 111226 463 289 aa, chain - ## HITS:1 COG:SPy1395 KEGG:ns NR:ns ## COG: SPy1395 COG4469 # Protein_GI_number: 15675318 # Func_class: R General function prediction only # Function: Competence protein # Organism: Streptococcus pyogenes M1 GAS # 9 201 3 200 320 73 31.0 5e-13 MYAALVNEKLVTAYEEYSLLPNYQQLNTKIYRCPRCKKRVILIVSQSKAPFFKHYNVSQG KGEKEEHALSKQMLCTALVGAGYHAKMEVNLAYRQLRADILMQNSISFEIQCSPISDIEF DHRHNLYEKIGIKDVWVVGRRHFLHQQLRESQKKFLRFNQQWGWYYLEINPYEADISLKY NILLSPISRKLKYQIKQFSLDDLGIKQFFNFVPYLKRYSLPDVQFQRQYLHKKIQQKTGY GLQVAQLLYENRKSVEDIPVEILTQYYLPKQSCPLVQYLQKISEDIETK >gi|308165933|gb|AEHO01000007.1| GENE 113 111304 - 112074 933 256 aa, chain - ## HITS:1 COG:no KEGG:LBA0642 NR:ns ## KEGG: LBA0642 # Name: mecA # Def: adaptor protein # Organism: L.acidophilus # Pathway: not_defined # 1 256 1 244 246 105 32.0 2e-21 MKINRINENVIRVEISNDEIAEHGLSVLDFIKRTDKVRDFLMGIAKEVYGKNDENDEEKH EEDLVSFEVMPSSEGLAIRIVRSPLNRDMDEDNSADDESSFVEDDDDEEESEADSHSGCY YRKYHPEEFEDENDEDDEEDDDDDSTGMLEDFHRIYSFADFDDLVAFMDVVHVADLASSL YFFEGKYYLQMEFIDDLTLSEPQQIWALANEFGTRLEAKGFRARLVNEKFAMVKHYGICI YRRDAISQFKENFFAK >gi|308165933|gb|AEHO01000007.1| GENE 114 112165 - 112563 410 132 aa, chain - ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 131 1 131 131 156 60.0 1e-38 MIKLYISPSCTSCRKAKAWLTKHNLAFYERNILIQPLTKKEILNILRLTEDGTEEIISTR SKIFKKLNVNLDQLSIDQLLDLVVKHPSLLKRPIIMDNRRLQVGYNVEDIRRFLPRSVRK MELIRANAIISL >gi|308165933|gb|AEHO01000007.1| GENE 115 112780 - 113274 224 164 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00174 NR:ns ## KEGG: LCRIS_00174 # Name: not_defined # Def: RNA polymerase sigma factor # Organism: L.crispatus # Pathway: not_defined # 1 163 1 162 163 102 39.0 5e-21 MIKSQNFIKAWNNKKLVAGVLKTIGVQRQYHNYEDLLNEGIILYAECLEALDTVQLTAKD KDKIAFTKIKWRIIDQLRKHKKYNEQQNIADYPQISFIIPQHDNFLLLQDEIKSMSPTER LIFSQHWINNKTITEISQQYNLSRSTLQRNKAALRLRLREKLQD >gi|308165933|gb|AEHO01000007.1| GENE 116 113336 - 113761 422 141 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1700 NR:ns ## KEGG: FI9785_1700 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: Metabolic pathways [PATH:ljf01100]; Biosynthesis of secondary metabolites [PATH:ljf01110] # 11 136 2 136 139 103 42.0 2e-21 MQNYEEIIFNNLEKRKVIINQEKTDQEIIAQALKCNNLSQMMEWRIDYYEHATEIDRLLA LSQQIHQQAPQLQILTTFRSQKLGGKTELCSEDAYLNLVELLINFNFGTAIDIELDHTPD RVNDLIKKATNKHLLIREYHN >gi|308165933|gb|AEHO01000007.1| GENE 117 113798 - 114658 685 286 aa, chain - ## HITS:1 COG:no KEGG:LJ1019 NR:ns ## KEGG: LJ1019 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 10 282 12 279 283 117 28.0 6e-25 MNKRQLKTKLPYKEKTYQWSKEIIREKLHFASGSELLQYVVHMDNYAVSAMMMAMYDFDK DPLEGKYKAVIFDQNHGIVLSTRNTRQIIGDFLNNEIFEYQLGLAVQKEIARSMNLNRYH ALSFNKFAFFSLKGFTNGKTSWLNLSALTEFSLHRRNASFTSVEVNGSRHIFCFDKVVAN LDKVLSEAITHNLVVKRGLLAYESKLMGRPVVSGREKKSLLNDSQYFAYEIMPKCDANYL VSMSKGIWHDIFLLFGKRLFKLLEINWNYEDYKEAYKHNNRINYLR >gi|308165933|gb|AEHO01000007.1| GENE 118 114793 - 115395 803 200 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804687|ref|ZP_07698752.1| ## NR: gi|309804687|ref|ZP_07698752.1| hypothetical protein HMPREF9213_0193 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0193 [Lactobacillus iners LactinV 09V1-c] # 1 200 1 200 200 386 100.0 1e-106 MLICKKKTEKKANELQNQFAEEAKKAAHKTVEPVTPTPAPVVSGETGIGYLNLDMLSDGF TGTLYVPVVGKDVNCKVRLLDDAGKYTNDYVVTDTTVKALASKVVNGVTFYKVAENRWIP AKFAEVLSDKEVAFKGVAKTFVKGHANYAVAMLDADGKYTGKFLKQGSSFKVFAKKVING HLCYRLGTQAQWVPARFLVF >gi|308165933|gb|AEHO01000007.1| GENE 119 115358 - 115840 709 160 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804572|ref|ZP_07698637.1| ## NR: gi|309804572|ref|ZP_07698637.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LactinV 09V1-c] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LactinV 09V1-c] # 1 160 1 160 160 248 100.0 7e-65 MKKERLDKFSIRKLTVGAASVLIGVAFGATTVSAAAKPSVRQSTPAGQQAAQVTELKDVK FTFKMGDKSATTSAVTVYATKDGHYGFENDAAKCTSTAAQIVSAFLDKVTTNDDIKIAQG VAYPEKINAGENTVEVAAKPASNPVEHSDADLQKEDRKKG >gi|308165933|gb|AEHO01000007.1| GENE 120 116025 - 117326 1618 433 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804647|ref|ZP_07698712.1| ## NR: gi|309804647|ref|ZP_07698712.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LactinV 09V1-c] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LactinV 09V1-c] # 1 433 1 433 433 627 100.0 1e-178 MKKEKLNKFSIRKLSVGAASVLVGVALAGGATTAFADGTSANTQAAAVKTEKSAVVVFKT ADNKLVGYTVVKGLPTEANVKSDVPDGYNLVTPVKYNSVGTADKPEYEVAVVEKSLVEKV AAERTKRAGLSYEDITKKHDAKVKFDAAHAAVQPAKDALDAANDAMAEKDTAVEVSKAQL ALYNELLAKNPKANVGDKVATAQAEYVKAVSAQLAQSFATAKAKAEFVAAVRKEAEAKVA YEKLGGQLADLSAYNTLEVIAGKMDVVKAQAATAKKAVEDAKTALFKAKLEAAEKTDPVE LIVAKFALEDATSALNNALATYNAYVARLNTLKTYFDEVHKTALVSTKAVTPSAAETPVA EAAEVAFSGVAKTFVKGHPNYAVAMMDANGVYTGKFLKQGSSFKVFGKKTIKGRVCYRLG TQSQWVPAEFLVF >gi|308165933|gb|AEHO01000007.1| GENE 121 117628 - 118086 414 152 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1773 NR:ns ## KEGG: LGAS_1773 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 29 148 100 219 293 124 49.0 9e-28 MKQTRESIIRENLHFRDNLHFMLDIDDPRTHYVLRVVQMIATIIIFLLTYLQHVVVINFQ SAGANDALTMFQGIANKSNNYYFNQGSDLFSFLNHLMGGNLWSTYRYAINSSQFMQDPVG LKIMIWSFLLILISAFCILTHFLRNPTSIGIR >gi|308165933|gb|AEHO01000007.1| GENE 122 118531 - 119631 1511 366 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 48 363 155 438 444 117 29.0 5e-26 MHISKSEWLGVAVCFGALASMPNTVVKNSPVAMTTVKADTSYVEDKSYGVDVSSFQGTDM SNYAQNGAKYAFVKTTEGTWYTNPKASGQVSSALANNMMTMSYHFAVFGNDAQKASAEAN YAVNASRNVGVPAGSYVVCDWEAGDGNNINGPVEANTDAILSFMDTVNANGYKPMLYSGA YLMRNKIDTARVVAKYPNSLWVASYATMGRIDEPDFEYFPSMNGVAIWQFTHNWRGLHVD GNINVLPLSKGGVSQAPSSVPATPSVDINQVIASASQSVAQKEQPAITSTTTDTNQDVPF TAVGRVNYVPGYGIMLWGQPGYKNALNRYLPHGSRWKIFKKRYINGSVYYNLGGSQWVDG KYIIIE >gi|308165933|gb|AEHO01000007.1| GENE 123 119643 - 120947 1413 434 aa, chain - ## HITS:1 COG:SA2437_1 KEGG:ns NR:ns ## COG: SA2437_1 COG1705 # Protein_GI_number: 15928230 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Staphylococcus aureus N315 # 27 191 306 472 502 133 45.0 6e-31 MNRSTITSAVTVILIAGAGISVDNILNTNSQTHQVVDATTQQEFLNKAIPAATKASSKYG TYTSVMLAQAILESNWGNSQLAQEPNNNLFGIKGSYQGNSVSFSTSEFSDDNGYYTVDAN FRKYPTYHESFDDNGNLLRNGLNGYYSDTWIENAQSSSDATNGLQGKYATAPDYAQSLNK IISQYDLTKYDPKITSVNERKVIQKTCSVTSAPVESSVGKLVKTLHRGDVVDVTKYIAYG NGVKYALTNYGWIDAIAIVPIVSQAPVARMSDASVVNKIVKINYIPKYGIAVWQKPAHHV VGKYLAHGTSWRVDRQISINNHLWYRVGTNQWIDSQYTIVTYDSKKVAEPKTQAPASPVS SAGRKEVAIRGIVTVSCGNYQKLAVVDAPAGKLTGKKLANNTRWRFFKIAKADGHFWYNL GGNQWVIADYVYEK >gi|308165933|gb|AEHO01000007.1| GENE 124 121140 - 121406 414 88 aa, chain - ## HITS:1 COG:no KEGG:LA2_00960 NR:ns ## KEGG: LA2_00960 # Name: not_defined # Def: hypothetical protein # Organism: L.amylovorus # Pathway: not_defined # 1 79 1 79 89 68 46.0 1e-10 MTKTSKTLKLIFKNDHHKVSTLSLPYASANLTEAEVKEVMDTIAKENIFAKEGVGLYTEP QAAQYVERTINPIFTTAKSKHPIAPAIN >gi|308165933|gb|AEHO01000007.1| GENE 125 121442 - 121654 299 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312871542|ref|ZP_07731635.1| ## NR: gi|312871542|ref|ZP_07731635.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] # 1 70 1 70 70 119 97.0 9e-26 MKTKTVSQKVEYIFINPKYDEGEKVFTFKNLKPDADYASVVNVGKAIAKLHKGDSFKNAT LIQTNEIIAE >gi|308165933|gb|AEHO01000007.1| GENE 126 121853 - 122287 512 144 aa, chain + ## HITS:1 COG:no KEGG:FI9785_219 NR:ns ## KEGG: FI9785_219 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 144 1 139 139 155 59.0 3e-37 MTEDLKNTETEETTEETTEDQFEVVVPEPNRVEMPATEYKEYPDYLNVFANFYIAKFEQA DLEIMAAFDGNHDIIEINTYILANEAFGRRNLIKHVLNIHAQNFENILANIKAKTGLAVE SVRTFDEWNDWYSERRNNISQTLS >gi|308165933|gb|AEHO01000007.1| GENE 127 122400 - 124472 2235 690 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 7 650 10 647 666 660 53.0 0 MNDKLKNRLSIAGLLITIGIVYGDIGTSPLYVMKSIINANGGLVNINRELIIGSISLILW TVTLLTTIKYVLIALQATNHGEGGIFALYALVRKRAKWLVMPALIGGAALLADGALTPAV TVTTSIEGLKGMKLGQHIFVPDQKSVIFITIIILLLLFLIQRMGTDVIGKAFGPVMLIWF TFLGVVGFCNMIGDMSILEALNPIYAIKIMFSPANKVGFFILGSIFLATTGAEALYSDVG HVGKANIIGSWPYVFVCLSLNYLGQGVWILHNPNYHAIGDLNPFFAIVPEQLRIYAIILA TLAAIIASQALITGSFTLVSEAIQLKFIPRMNIIFPSKQQGQIYIPSVNKMLAIATLSIV FFFKTSEHMEAAYGLAITATMLMTTLLLFEYLGQSNHSIFTRLLFVVIFTLIETAFLISS LVKFVHGGYVTVLIAGLILGVMYIWYYGNKVRDLRENRNSYVRLDQYIDMLTRLSHDEDY PTYATNLVYMAKVKYNKFIKREVIYSILDKRPKRAKAYWFVTVNVTDEPFTNEYSVNTFG TKNVINVQLYLGFKQQQRVNIYLRQIVHDLIADQTIEAQPQEYTTTPGRDVGDFSFVIVQ DVVSPQTQLTNYEKNIIKARVWLQNLSSNPASWFGLDYSDTVIERVPLILGTRHKFYINR VPASKYSIIEKEKEEKKHMLAEYRKKLHHF >gi|308165933|gb|AEHO01000007.1| GENE 128 124586 - 125770 1001 394 aa, chain + ## HITS:1 COG:lin2952 KEGG:ns NR:ns ## COG: lin2952 COG1473 # Protein_GI_number: 16802011 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 3 383 6 386 400 413 49.0 1e-115 MNLQEELLNKLKEDETEIIRIRRHLHEYPEISFHEKETATYIKKYYQQLGCPIHDCGDGY GFYIDIDSNTAGPHLALRADFDALAVQENNNLSFKSKHLGVMHACGHDGHTAYLMVLAKN LWQIKDKLRGKIRIIHQPAEEISPGGAISMLKDGVLDGIDQIIGLHLMSSMPTSMIGIHK GETQTGRASFEIKLIGKGGHASMPHLSNDAIVAGAYLVTMLQTIVSRRINPFDTASVTIG SFEGVGSFNAIKENVTLKGDVRIMKESTRKLVKSQIFQLVNGLQTSFNIKASINYDDNYP VLINNEQLANEAITALTKAKLPEVSTVMDPGPQDPSEDFSYFSQNIPGLFFYVGCMAADQ TNHPHHSPDFYVNENSLLIAAKAAAIITLHTLFK >gi|308165933|gb|AEHO01000007.1| GENE 129 125829 - 126620 796 263 aa, chain - ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 254 4 259 269 89 31.0 8e-18 MLSYDFMQYAYLASSFIAITCAVVGVYVVARGFSFLAHTLSEIGFAGAAFAVFLGINPLW GMLLFTLLGSLCVGELSLRSEQKESAISAISALFIGLGVLFLAISHANSRYATDILFGSI IGVDLSGVIQLVLLSLVVILVILCIMSPLNYDSFDHIGAISHHLNTALVGAIFLMALGMS VAIGSQVVGSLLVFILLTLPASTARYLGKTIFSMLAWAVAIALIGVWLGLALGYYTNWPV TFFISMIEVLIYLLVYIGKLIKK >gi|308165933|gb|AEHO01000007.1| GENE 130 126624 - 127277 196 217 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 19 211 294 506 563 80 25 7e-14 MCTILQVNNLMMKFEDRLIFDRVNFTLQKGSTTALLGSNGTGKTTLIKILMGMLPATSGD FQYSSKIKVAYVPQFRNLDADYPLSIKAFVELNMPLFKSKKDKAEINRILAETHLSQIQH LRMGAASGGQRQRAYLAQALLDRPDLIILDEATASLDPTAKEELMLLIKHLNEKHQMTVL FTTHDIMLAKKYMHEYLIFHNKTLIHGQMKDFAEEEI >gi|308165933|gb|AEHO01000007.1| GENE 131 127300 - 128088 759 262 aa, chain - ## HITS:1 COG:ybiV KEGG:ns NR:ns ## COG: ybiV COG0561 # Protein_GI_number: 16128790 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 2 242 3 245 271 145 35.0 6e-35 MIKLIATDMDGTWLREDKTYDEAMFVRIFDLMQEQNIKFVVASGNQHANLLTRFPNHVDK IYFVAENGAMIAQGKQILRIVDIPDDIYNLMLNIVDELSYPSIVSGVTGGYILKKSGQEF YLENYKYYKNLKQMDDYKEVDDRIFKVSIVVPSELMPKIITDLRYRYPEIGFVAGSANTI DMSTPGMNKAVGLKYLSYKLGIKSSEMVAFGDSGNDVGMLEYVGHSFAMGTALPEAKKAA KHIIGSCDESAVQYKILDLLTR >gi|308165933|gb|AEHO01000007.1| GENE 132 128230 - 129426 1380 398 aa, chain - ## HITS:1 COG:lin1939 KEGG:ns NR:ns ## COG: lin1939 COG0452 # Protein_GI_number: 16801005 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Listeria innocua # 4 389 6 390 399 309 44.0 8e-84 MSKIAIYISGGIAAYKSILVLRELQKQGHEVKVGMTANAQKFVGVQTFAALTHTTVLTDL WDNDHQTEIGHLELAQWCDLALVVPATANIIAKLANGIADDAVTTALIATDKPIIVVPAM NNKMWHNAALQRNIKQLIDDGMQVMTPETGYLAEGYQAQGRLPEPEKIVQFVNANLHCDS SLVGKKVVITAGATLEKIDPVRYISNFSSGKMGWAMVQAFLQRGADVILIYGKVSVNIVP FARLTTIHVASAQEMLTVAEHEFSDADILVMTAAVADFRPKNYCPQKIKKVTGNDSYQLE LVKNPDILYTLAQSKNEKQLVVGFAAETNNLLANAHTKLSKKGADMIIANDVSQDVFGSD LNEVTIITKDAPDVKLPRMNKQKIAESIVNHIIKLNSK >gi|308165933|gb|AEHO01000007.1| GENE 133 129549 - 133214 3876 1221 aa, chain - ## HITS:1 COG:SPy0099 KEGG:ns NR:ns ## COG: SPy0099 COG0086 # Protein_GI_number: 15674322 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 1 1189 1 1190 1213 1714 69.0 0 MIDVNKFESMQVNLASPNKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWTC SCGKYKGVRYRGIVCDRCGVEVTSAKVRRERMGHIELAAPVSHIWFFKGIPSRMGLILDI SPRALEEVIYFAAYIVIDPGDTELEFKQLLTDAEYRENKAKYGDRFQAKMGAEAIQDLLK QVDIQEEAKKLKEELKTATGQKRMRAIRRLDILEAFCNSGNKPEWMIMDCIPVIPPDLRP MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPRIIVQNEKRMLQEAVDALIDNGR RGRPVAGPGNRPLKSLSHMLKGKPGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP MALELFKPFVMHELVKRGLASNIKNAKRKIDREDDDIWDILEYVIKERPVLLNRAPTLHR LGIQAFEPVLVAGKSIRLHPLACEAYNADFDGDQMAIHLPLSDEAVAESRLLMLAAHHIL APKDGKPIVTPSQDIVLGNYWLTQTERGREGEGMIFNSPEEATIAYENGDIHYHTRIGMA ADSMPEKKWPEGYEHGIFVTTYGKLVFNALFPKDFFYVNEPTQENLTSPLAEKYFLKPGE NIHDKLDSLPLGKAFKKGFLADSIAQIYKLYRVQRTSDYLDDLKELGYTVCTTSGLTIGV EDIPTLKDKDDIVRENRQKVDVISKQYRRGLITDEERHDRVISIWNNCKDTIQNELAGLF DPRNPISVMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEIPVTSNFREGLTVLEMFMST HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREEDCNTDRGITVSAITEGDEMIEPLF DRLVGRYTSKSVIDPTTGETICPANVMMDEDMAQKIVDAGVTSVTIRSVFTCNTQHGVCQ KCYGMNLATGEDVEVGEAVGTVAAQSIGEPGTQLTMRNFHNGGVAGANDITQGLPRVQEL FEARNPKGRATISEVTGEVTSIEEDPAEHTREITVKGQTDTRTYSVPYTASVAVAEGDQV ERGQKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIADKHVEVMARQMLQKV RILDPGETDILPGELMDIGEFKARNKDVIISGGIPATAQSVMLGITKAALETNSFLSAAS FQETTRVLTDASIRGKSDPLLGLKENVIIGKIVPAGTGMPIYRKMEPKADIPAENLPEKE NESDSKEKSVYAQAQSTGSEN >gi|308165933|gb|AEHO01000007.1| GENE 134 133233 - 136916 4258 1227 aa, chain - ## HITS:1 COG:L0137 KEGG:ns NR:ns ## COG: L0137 COG0085 # Protein_GI_number: 15673782 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Lactococcus lactis # 4 1160 1 1156 1196 1672 69.0 0 MFSLLGHAVNYGSHRTRRSFSRIKEVVKLPNLTDVQTESYKWFLKEGIREMFDDIMPISD FSGKLSLEFVDYKLLKPKYTLEEARDHDANYSAPLHVTLRLTNHETGEIKTQDVFFGDFP LMTDSGTFVINGAERVIVSQLVRSPGVYYHCDYDKNGRPIYGTTVIPNRGAWLEYETDAK NLAYVRIDRTRKLPMTVLVRALGLESDSDIQDFFGKSDSLSFTLEKDMHKNPADTRVAES LKDIYERLRPGEPKTTDSSRSLLYARFFDPKRYDLAPVGRYKINKKLSLKNRLLRQTLAE TLADPDTGEIIAKKGTVVTHELMDKLEKYLDRDDFKTVTYQPSEEAVLPDPITVQEIKVF SKVDPERVVKLISNGHIGEDVKHITPADVLSSINYFFALQDGLGSIDDIDHLGNRRIRRV GELLQNQFRIGLARMERVVRERMSIQDIATVTPQQLINIRPVVASVKEFFGSSQLSQFMD QNNPLGELTHKRRMSALGPGGLSRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSMA TYAVVNKYGFIETPYRRISWETHKVTDKIDYLTADVEDNYIIASANAPLNEDGSFKEKIV LARHKEENLEVSPDKLDYMDVIPKQVVSVTSACIPFLENDDSNRALMGANHQRQAVPLIN PHSPLVGTGMEYRAAHDSGDAILAKAAGVVEYVDANVIKVRRDDKTLDEYVLEKYRRSNA TKNYNQTPNVHCGEKVVEGEVIADGPAMENGELALGQNPIIAFATWNMYNYEDAVMISER MVKDDVYTSIHIEDYESESRDTKLGPEEITREIPNVGEDALKDLDEDGIVRVGAEVQDGD ILVGKVTPKGVTDLSAEEKLLHAIFGEKAREVRDTSLRVPHGGGGIIQNVRVFSREAGDE LAPGVNKMVRVYIVQKRKIQVGDKMSGRHGNKGTIALVCPEEDMPYLPDGRPVDICLNPM GVPSRMNIGQVLEMHLGIASKHLGVHVATPVFDGASEEDMWNMVREAGLGKDGKTVLYDG RTGEPFHNRVSVGVMYYLKLTHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEV WALEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGEKIPKPGVPESFRVLVKELQSLGL DIKVLDSDKNEIELRDMDDDSDEHLNIDSLSKLAEQQEKKKLAEEAEEQEAEETDQVDEQ SNFDESDEEEEDFDDLEFPTSNDEVSD >gi|308165933|gb|AEHO01000007.1| GENE 135 137118 - 139541 1943 807 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 798 6 806 815 753 49 0.0 MNIPYSENAKKVLDIAQQKATMLKHAVISTEHVLLAISTMEECSAYQTLKKYKVTESRVE NIINEFYSGYGETVVTEEYCIFSPRLKKVLQCAQRLALVLKQDTITTNILLMALIKEKEL TSRLILSDNCGIDIKELLKVLRYTISKANSVNSKKHSSTPALAKVSVDLTRQALRGMIDP LIGRTKELKRVIQVISRRVKNNPMLVGDPGVGKTSIAQGLALAIVNKEVPANLLNKRILS LDLASLVAGTKYRGDFETKMKTIINEVRRDGSIILFIDEIHTLVGAGGAEGAINASNILK PFLSRGEIQVIGATTFDEYQKYLEKDPALARRFQRIKVGEPTAKETLGILQGLKSKYEEF HNVNIEADALKEAVDLSVRYISNRFLPDKAIDVMDEACSAVKIKHNATEKDSSGELKVQI ADLAEQKQNAVIAQDIAKAGQLYRQELQLKAKLQKMLQQKDTSKPKRPLVTVDQVEKVVS ELTGVPVTKMQRQESKRLAKLESILHQRVIGQNLAVEAVSRAIRRSRSGIKDLNRPIGSF LFLGPTGVGKTELAKALADAVFGSEKNIIRVDMSEYMDKVAVTKLIGSAPGYVGYEAGGQ LAEKVRRNPYSVILLDEVEKAHPDIFNILLQVLDEGFLTDSKGRKIDFRNTIIIMTSNLG SRSLKDDKTVGFATSNQDINGVIKEKVSAATKNFFRPEFLNRIDEQVVFESLDKKQIRQI VVLMINQLVQRLQEKKIAMKITTGAMDILAKDGFDPEMGARPLRRAIQHEVEDVVAKYLI SGELHEHQILKLSAKNGKLTFAISDNK >gi|308165933|gb|AEHO01000007.1| GENE 136 139624 - 140802 1154 392 aa, chain - ## HITS:1 COG:L56488 KEGG:ns NR:ns ## COG: L56488 COG0436 # Protein_GI_number: 15672039 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 4 390 3 390 391 330 45.0 3e-90 MSKLSENVHSTLNKIPKFKLFNFSQYALKFPDVIQLTLGEPDFNTPDHIKLAAIAAIINN HTRYAPQRGIPALLNAISADVEQKLGLHYDPKDEIIVTNGVTEGCYATIMALANPGDIFL LPTPGFPMYVADVAIAGAEIVEIDISKDNFKLTPQLLQKYLDKYGDRVKGLIMVNPSNPT GVAMNQAELDALAEVIRGKNIFVISDEIYNCLWYEDEIGSIAKALPEQTIMFNGFSKTYC MTGWRIGYICAPREISAQIFKVHCFALTDTVTFVQDAAIEALVNGQDDCLPMKKAYIERR DYICDALAKMGWEHPFPQGAFYVFAKAPEFLEQDDEKLAYDLINNAKIAVAPGSYFGKGG EHYLRFSYAISLDDIKIAMERLKKYTAERKLQ >gi|308165933|gb|AEHO01000007.1| GENE 137 140920 - 141429 475 169 aa, chain - ## HITS:1 COG:SP1597 KEGG:ns NR:ns ## COG: SP1597 COG4720 # Protein_GI_number: 15901437 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 160 1 151 153 77 34.0 1e-14 MKSKRIKLNVFTALMIAMSVVLGRCFLIPIFWTRGNINLCDAGIMLASLILGPFYGALVG GLSGMLLDLVSGYAQFAIFSLIAHGLEGLVIGFIYFKLKNHTWSKYLALFLGSVVMIAGY VVADSYLYSLKAGWLGIGTNILQALIGAIISLSLYFALSKKIHNIFEIN >gi|308165933|gb|AEHO01000007.1| GENE 138 141419 - 142273 804 284 aa, chain - ## HITS:1 COG:SPy1209 KEGG:ns NR:ns ## COG: SPy1209 COG2240 # Protein_GI_number: 15675173 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 284 1 281 288 110 25.0 2e-24 MQKMLIIEDLSALGQISMVSAISVATIMNVKPALLPTIILSTQSEGFGAPVSLTLEQWQN KAIEHWNNLEQEFDTMMIGYIGCISGVQNILSFLPLIRKKKLVVDPAMADQGSLYPNLPI TYPSMISTLCQYADVILPNFTEACMLAQVDYANDSLNQSKLDQLVDKLVQRFPSTEIIIT GVPLANKLAVVYVNKLNIASPMLWSVESIARHFYGTGDIFTAIVSACLAKKISTEKAVKI AINALELAVKDSAQLTDHELLYGLKMTRLQEYLLDIEGNEIDEK >gi|308165933|gb|AEHO01000007.1| GENE 139 142526 - 144022 1606 498 aa, chain - ## HITS:1 COG:SP0713 KEGG:ns NR:ns ## COG: SP0713 COG1190 # Protein_GI_number: 15900610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Streptococcus pneumoniae TIGR4 # 1 487 4 491 491 652 66.0 0 MNDQLIVRRKKMDELRAMNVDPFGEKFDRQDLARTLNEKYIQEDKEELNDDMPQTRVAGR MLAKRGKGKVGFADIYDRTGKIQIYVRKDIVGEENYQIFKQADLGDFLGIDGHVMKTDTG ELTIRASHITFLSKALRPLPDKYHGLQNVEQIYRQRYLDLISNQDSYKRFLNRTKIIQAI RDYLNSLDFLEVETPVLHNIPGGAEARPFITHHNALDINLYMRIALELPLKRLIVGDMER VYEIGRVFRNEGLDTHHNPEFTELETYCAYWDFHDVMDEAEGIIRAAAKVVSEDGKINYQ GTDIDLGKSFRRVHMVDLIKEKSGVDFWQPMTDDEAKKIAEEHGIQCEKFWKVGHVINAF FEEFCEGTIVDPTFVYGHPVEISPLAKKNKKDPRFTDRFEIFILGKEYGNAFTELNDPID QRQRFEAQMAERAAGNDEADMIDEDYIRAMEFGMPPTGGLGIGIDRLVMLLTNAPAIRDV LLFPTMRPERFDDLDSEE >gi|308165933|gb|AEHO01000007.1| GENE 140 144055 - 145050 479 331 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 3 331 26 350 353 189 31 1e-46 MSKSWKIRDVVIPNQVVVAPMAGISNAAFRMVCKQFGAGLVVCEMISDHGIIYRNKKTLD MMKIDPNEHPMSLQIFGGSEETLVEAARYVDDNTHADIININMGCPVPKVTKTDSGAKWL LDPDKIYQMVKAVVNNVQKPVTVKMRTGWDEDHIYAVENALAAQEAGACAVAMHGRTRKQ LYTGHADWGILKEVSDALTIPFVGNGDVTTPQLAKKMLDEVGCSAVMVGRAVLGNPWILK EITHYLDTGELLAPQTVEERVTTCKEQLRKLVELKGEKIAVPEFRRQAAYYLKGIPRSAR TRAKINDVWTQQEVYNLLDEFVEKFESKLDK >gi|308165933|gb|AEHO01000007.1| GENE 141 145130 - 147175 1223 681 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 16 656 14 630 636 475 42 1e-133 MKNKRNRLLSNGLFYIFIFVILLSGINWALGGSDGNGTTKNIRYSDLIKDLKNNKIKSIN IQPANGAYTVTGTYRKPQALDKRGGTRFDFFKNSNKPVGATKFSTTMLQNDSVVKKVSDL AQKHGVAFSGQGESQSGNWISTAVMLIPTLIFIVMLWMMMSQGGKGGRGMMNFGKSQVKP RDPSKNKIRFSDVAGEEEEKQELVEIVEFLKNPAKFTKLGARIPAGVLLEGPPGTGKTLL AKAVAGEAGVPFYSISASEFVEMFVGVGASRVRDLFDNAKKTAPSIIFIDEIDAVGRKRG NGIGGGHDEREQTLNQLLVEMDGFEGDEGVIVMAATNRSDVLDPALLRPGRFDRKVLVGC PDVKGREAILRVHAKNKPLANDVDLKEVARQTPGFVGADLENVLNEAALVAARRDRDEIT ASDIDEAQDRVIAGPAKKDADISEAQRKRVAYHEAGHAIVGLVLSDSRTVRKVTIVPRGR MGGYNIMLPKEDQAISTKKQLMEQVAGLMGGRAGEEIVVGDQSTGASNDFEQATAIARGM VTQYGMTEVGMSQLESANTQDQMVKPYSESTAEKIDLAIKNILDEGHKVATDIINTHRDT HRLIAEALLKYETLNEKQILSLFKTGKMPEENDYPSEKDALNYEETKEALKRKEDKFLES DSEDQKGPDDAKDSEDPKTND >gi|308165933|gb|AEHO01000007.1| GENE 142 147259 - 148551 955 430 aa, chain - ## HITS:1 COG:BS_yacA KEGG:ns NR:ns ## COG: BS_yacA COG0037 # Protein_GI_number: 16077135 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Bacillus subtilis # 1 254 1 260 472 147 34.0 4e-35 MKKIINFFSKYKLSLADKKIILAISAGPDSMALLDMMRQIVDDPQSQLIICHVDHCLRND SYLESKIITKYCQQYQLQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTA HHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLA YIVDYTNQENETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYH KLLNGIIQVNAADLSDFNCHQLSLYFNWLIDKEWGRQVYFESLDLSDNVQNTKDHFTLVR YLSHFYICPSDIILLKNHQQEVVLDQCFSWLKTKYIITLNKLNLPEVGYFYANKTSKFIA RNVQATDRFKLPNGSRVKPKKKFAEKKIPTFMRNTYLAILINDDIVFVQDIFKNQEYNIN YQRYNIYTLF >gi|308165933|gb|AEHO01000007.1| GENE 143 148582 - 148920 378 112 aa, chain - ## HITS:1 COG:no KEGG:LJ0280 NR:ns ## KEGG: LJ0280 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 112 1 114 118 78 41.0 1e-13 MKYLVGLRVSAKVDKVIASGIKVILNNGRRGFIHWRDFGPLWDLKKNSFTKGQILRLVIV AINEKGEILLSLNRVNESTLVDPTNPFNKSDDFAGTLKCLLKEAEDLFNQFN >gi|308165933|gb|AEHO01000007.1| GENE 144 148920 - 149294 313 124 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0273 NR:ns ## KEGG: LGAS_0273 # Name: not_defined # Def: septum formation initiator # Organism: L.gasseri # Pathway: not_defined # 7 122 8 123 125 97 49.0 1e-19 MSRIHHYNFLSPEEQEQRIIRKAEKQRKKIHRLRKRKIVIGFGVIFIIILFQLIMARIQT NKINNQVYSLKKELYTKQALHKKLKAESYDLKDLDYLLKVIRYKYYYSKPGEFIYNIQDK KDSN >gi|308165933|gb|AEHO01000007.1| GENE 145 149377 - 149619 366 80 aa, chain - ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 79 17 95 105 73 56.0 1e-13 MRIDKFLKVSRLIKRRTVAKEMADQERVLVNGRQVKSSYNVAINDIIEIQFGVKALKVKV LNIKETTKKAEASDLYEVVE >gi|308165933|gb|AEHO01000007.1| GENE 146 149633 - 152965 3512 1110 aa, chain - ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 24 1059 26 1122 1177 950 45.0 0 MKLSELIAADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENR AQQIYSSLVELFEENMVHFFPVEPLLETQAAVSSLDELSQRLDAMSFLLTKQKGIVISTP QALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFALRGDILD IYPINIAYPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQNEDYTTI LDYLTESGIICFDDIRAIRQNIVQIDARNRDYLTHETSTNIKNSRLDFTSIFNQIVQAKI YSSLFQVSVNDLKIDQLLNLHTREPQQFFSQMSLIKNELSVYELQQQTVIIQADNLVRAK QIKSTFADYGIDITIAAENKLIPNKRQIIVDNFNQGFVLPRINLVYLTEHDLFNRQLHIH KKIKSLENAQQIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGKKGDYITITYRNHDQL FVPADQLGVVQKYVASDGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRATEK GFAFLPDDELQRDFEASFPYLETPDQIKAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVAL RAAFKAIDSGKQVAFLVPTTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNL SNGKIDIVVGTHRILSRDIKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPI PRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNGQIFFLHNKI QDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPN VNTLLVENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTAL GSGFKIAMRDLSIRGAGNVLGKQQHGFIDSVGYDLYAQMLDQTIKQKRGDKVCHKTNAEV RINLEAYIPTEYISSQKQKIEFYKKIKHANNVKAIDDIADELIDRFGTYPKSVENLLNIA TIKVLADTAQILSITNIDEKIDIVLDQKASEELKGPNIFRTLEHVCFRARVSVDHDCLHV RLILDSKSSWRTIFNELKVFLQAVIDILHK >gi|308165933|gb|AEHO01000007.1| GENE 147 152986 - 153543 524 185 aa, chain - ## HITS:1 COG:lin0245 KEGG:ns NR:ns ## COG: lin0245 COG0193 # Protein_GI_number: 16799322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Listeria innocua # 1 185 1 184 184 166 43.0 2e-41 MKLIVGLGNPGLKYQKTKHNTGFMAIDYYLKKNGLSFNKEKFEGFWIKTKIKGEDVILLE PQTYMNDSGKSVTQLVDFFKIDAHDILVIHDDMDMPVAKIRLRKSGKSGGHNGIKSIIHC LNDSEFNRLKIGIDHPTKETVVSWVLTPFSSDDCIKMEATFVTVSQIIDDFIDNKSIEFL MNKYN >gi|308165933|gb|AEHO01000007.1| GENE 148 153682 - 154653 1122 323 aa, chain + ## HITS:1 COG:L0017 KEGG:ns NR:ns ## COG: L0017 COG0039 # Protein_GI_number: 15673313 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Lactococcus lactis # 1 316 1 316 325 398 63.0 1e-111 MTEEKIHKVILVGDGAVGSSYAFAMVQQGIAQELGIVDIVKDRTKGDAIDLSDATPWIAP KNIYSAEYSDAKDADLVVISAGAPQKPGETRLDLVNKNLKILSAIVEPIVESGFKGIFLV AANPVDILTHATWKISGFPKDRVIGSGTSLDSGRLQRAIAELEHVDPRSVNAYMLGEHGD TEFPVWSYNNVAGVKVSDWVKAHPEVGENKLEEIHKTVADAAYTIINLKGATFYGIGTAL ARITKAILNDEHAVLPLSVSMNGEYGLHDLHIGTPAVVGRKGLEQVIEMPLNEDEQKRME ASAKQLKEVMDRAFKETGVKVRQ >gi|308165933|gb|AEHO01000007.1| GENE 149 154793 - 155476 647 227 aa, chain + ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 210 1 210 211 236 55.0 4e-62 MLIKSLVYKKDYLTTVNEKATLAEALQILEDSGYRCVPILDDSGKLFRGNIYKMHIYRHK SQGGDMNLPVTYLLKNATKTIKVNSPFFQVFFNIKDLPYIAVLDEQDYFYGILTHSKLLG MLSDAWNIKNSSFVLTVLSDNERGNLVKMAKIISKYTNIASCLTLDVKLGELVRRNLFTL PVGVSNDTMKAIVDKLEKKGFVVAEIEDLQSGTILRSDEKPGQYLNK >gi|308165933|gb|AEHO01000007.1| GENE 150 155554 - 156681 1079 375 aa, chain - ## HITS:1 COG:lin0885 KEGG:ns NR:ns ## COG: lin0885 COG0787 # Protein_GI_number: 16799958 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Listeria innocua # 1 373 1 368 368 328 44.0 2e-89 MISGIHRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGA QGLCVAILDEAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKKTSTFLS GTKLKIHLAIDSGMGRIGFNEDDAFLKANDYLLSHPEYDVEGMFTHFSTADCHDLEYFDS QVKKFDHFKKMLRIKPKYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQP KFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGFKV KVGDVYCPIVGRVCMDQFMVLLPEKMPVGTPVELISADAKAPNNIKAVADYANTIHYEIA CLLSDRVPREYLNKF >gi|308165933|gb|AEHO01000007.1| GENE 151 156685 - 157047 279 120 aa, chain - ## HITS:1 COG:lin0884 KEGG:ns NR:ns ## COG: lin0884 COG0736 # Protein_GI_number: 16799957 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Listeria innocua # 3 118 1 117 118 103 41.0 8e-23 MLVLRGVGIDIVDLDRIREQIKKGDLFAKRVLTSKEFEQYQKYQENRQVEYLAGRFSCKE SFSKAMGVGLGTIVKFKEVEIIDNDLGQPEMTAKSYHGRIFVSISHEKRYLVTQVVLEDI >gi|308165933|gb|AEHO01000007.1| GENE 152 157164 - 158627 1448 487 aa, chain - ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 438 3 440 516 555 63.0 1e-158 MKFSELNLKPELLKAIKRAGFEEATPIQEKTIPLVLSGKDVIGQAQTGTGKTAAFGLPIL QTLDKKQEGIQALIIEPTRELAIQTQEELFRLGRDENAHVQVVYGGADIRRQIRSLKQVP NILVGTPGRLLDHLKRRTINLSHLKHVILDEADEMLDMGFIQDIESILTFASNDHQTLLF SATMPKPILQIGEKFMHDPQIVQIKSKELTANLIDQYFVRLKENEKFDILCRLIDVQDPE LSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILVATDVAA RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSITFVTPNEIGYMKTIERLTRK KMTPLRPPSDKEAFDGQLSIANKKIQELLDSDLTKYTKEAEKLLENNSALDLVAALLKDM AKDAEQVKVEITPEKPLPFKNRRGNTQNFKRRYRSDDRDRNIKRHRKPNAQTRERNIKHN FVIKKKD >gi|308165933|gb|AEHO01000007.1| GENE 153 158643 - 160010 1283 455 aa, chain - ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 453 463 337 40.0 3e-92 MKMQLSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGERDGHDYVANAVANG AVAALWQKDHANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEPLLQARAQKLNQLQATF GFNSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVE IAQALANFVPTANRMQWEKGDLGEAIMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIAVL GDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKDHM DRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL >gi|308165933|gb|AEHO01000007.1| GENE 154 160149 - 160400 418 83 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628937|ref|YP_814109.1| 50S ribosomal protein L31 type B [Lactobacillus gasseri ATCC 33323] # 1 83 1 83 83 165 95 1e-39 MKQGIHPDYQEVVFMDSSTGAKFVAGSTLKPKETIEFEGKTYPLVRVEISSDSHPFYTGK QKFAQADGRIEKFNKKYGISSKN >gi|308165933|gb|AEHO01000007.1| GENE 155 160714 - 162042 1390 442 aa, chain + ## HITS:1 COG:NMB0388 KEGG:ns NR:ns ## COG: NMB0388 COG0477 # Protein_GI_number: 15676302 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis MC58 # 7 439 13 449 451 434 53.0 1e-121 MEKTKKLPTLALSTLMMMTLGNLGTSMAFQLQSANMARIFQTLGADPTRLGFFFILPPLA GMIVQPLVGYYSDRTWIPRLGRRLPYLMLGTIVAVIVMCLLPNAGSLGLSTSAALWFGAI AILFMDLSSNMSMQPFKMMISDMVNIAQKDTAWSWQTIWSNIGGVFATILPTILTIIGIK NTASKGIVPDSVILSFYIGALILIVTSIFTICNVHEYDPITYAQYHKLANKKSEVHGLIN ILKKAPKVFWTLGIVQFCSWVSFQYLWTYGPGTIAQNIWHTANAKSEAFQLAGNWYGILL GIQTIIAILWGFVLVKINDKTRKPMYILGLIVGAIGYFVLANAHTKLGSIIAFICIGIVW VTINAIPFTILTNALSGSNIGVYMGLFNSWICLPQVVASVASFVLYPLLNKYMPNMIMIS GIVSLIGAASVLIIKETYGEKK >gi|308165933|gb|AEHO01000007.1| GENE 156 162192 - 162962 515 256 aa, chain + ## HITS:1 COG:no KEGG:MARTH_orf139 NR:ns ## KEGG: MARTH_orf139 # Name: not_defined # Def: hypothetical protein # Organism: M.arthritidis # Pathway: not_defined # 27 240 6 219 243 130 45.0 7e-29 MEKWKLFELDCNAYLNKKYGNFFTHFGFSNSTISDIKYENNKKMFYIEVKMPSAQSGQFV LFPDYQNKKFVFSPNNKTKPNKSTDFIIAYMNKHFEKYAHVDSIGQNIDIDPKIFNEWIT NTYKDKGVKFMITKGKDYIIFPINQYGNYFFITAKYRIKKSGSSKVPKSKQQEVLKKLTQ MNINFELTDDFNIKSNNHLNKLKFQVDDSEYMFSYFKENIYHIRKLSNTRNANVIFSIEL RKEQNPTDLENFVNSL >gi|308165933|gb|AEHO01000007.1| GENE 157 162964 - 163974 1055 336 aa, chain - ## HITS:1 COG:NMA1500 KEGG:ns NR:ns ## COG: NMA1500 COG0270 # Protein_GI_number: 15794400 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Neisseria meningitidis Z2491 # 12 326 20 337 337 216 41.0 5e-56 MIHIDNKSLKGYKFIDLFAGIGGFRLALESFGAKCVYSNEWDKFAQETYHMNFGDTPEGD ITQVDETRIPDHDILCAGFPCQPFSISGKQYGFEDSRGTLFFDVARIVKEKRPKVVFLEN VKNFATHDGGKTISVVKNTMLELGYSFQFRVLNPINYGIPQKRERVYMVCFRNDIERELF VFPQPFKLNRFVEDFLLPDNEVRDLIVNRTDLVLNDKVNINYNSPSTIRVGTVGKGGQGE RIYSPKGIAITLSAYGGGVFAKTGGYLINGQTRRLHPRECARIMGFPDSFKLNPNMNQAY KQLGNSVVVDVLQLITQQISDALNHKYSGTNQLEMV >gi|308165933|gb|AEHO01000007.1| GENE 158 164935 - 165138 243 67 aa, chain + ## HITS:1 COG:no KEGG:SDEG_0952 NR:ns ## KEGG: SDEG_0952 # Name: not_defined # Def: hypothetical protein # Organism: S.dysgalactiae # Pathway: not_defined # 4 61 12 69 71 78 68.0 9e-14 MEVLIDKNMKKTDLQCAIATTPKTIAKMGRDENVSLETLGKICEYFQCDIGDIIEYKSME IKYDNGI >gi|308165933|gb|AEHO01000007.1| GENE 159 165122 - 165370 293 82 aa, chain + ## HITS:1 COG:no KEGG:FMG_0950 NR:ns ## KEGG: FMG_0950 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 82 254 335 542 131 91.0 8e-30 MITEFDSIPYSNAGRGLQCLLKTELALNNINTNKDKIILIEEPENHLSYSNMNNLSDIIQ VNSNKKSSQIIISTHSSFVLNK >gi|308165933|gb|AEHO01000007.1| GENE 160 165721 - 167817 1774 698 aa, chain - ## HITS:1 COG:MA0166 KEGG:ns NR:ns ## COG: MA0166 COG2217 # Protein_GI_number: 20089064 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanosarcina acetivorans str.C2A # 1 694 42 763 764 524 41.0 1e-148 MNNNNKHSSHSHHNHGDMDHSKHEHGITDEHGDHKDQHQEHHAGHDHSGHGGHDHHHHGN FKELFLKSLPLGIIIMLLSPMAGFDLPFQFTFPYSDIVVAILSTILIIYGGRPFYQGAVD EFKQKEPGMMALVSLGLSVSYLYSIYTVIASYVTVEQIMDFFFEFASLLLIMLLGHWIEM KAIGEAGDAQEELAKLVPKDAHVVLDDDSIETRPVADLKVGDLIRVQAGENVPADGTIER GESRVNEALLTGESKAVKKGPGDEVIGGSTNGEGVLYIKVLETGDKSFISQVQDLISQAQ SQPSSAENIAQKVAGWLFYIAVTAALIAFVVWTLIADIPTAVKFAITTLVIACPHALGLA IPLVTARSTSLGASHGLLVKDREALEIAQDADVMILDKTGTLTTGEFKVLDVKLLNEKYT KEEIISLLAGIEGGSSHPIAQSIISFADQEGISPVSFDSIDVISGAGVEGKANGHQYQLI SQKAYGRNLDIDIPKGATLSVLVENDDAIGAVALGDELKATSKELIEALKNNNIEPIMAT GDNEKAAQGAAEDLGIEYRSNQSPQDKYELVKTLKEEGKKVIMVGDGVNDAPSLALADVG IAVGAGTQVTLDSADVILTQSDPGDIESFIELAHKTTSKMKQNLFWGAGYNFIAIPLAAG ILAPFGFTLSPAVGAILMSVSTVLVAINAILLRLDPKK >gi|308165933|gb|AEHO01000007.1| GENE 161 167837 - 168286 430 149 aa, chain - ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 10 145 4 139 144 108 38.0 3e-24 MSTIGLNTYITDAEWEVMRVVWANDRVTSKKVITVLQEKMDWTQSTIKTILGRLVEKGVL NTEQEGRKFIYTANIEATEAVMDYAEDIFNRICNKKVGNVIGSIIEDHVLSFDDIDQLEK ILEMKKSFAVEEVDCNCPEGQCKCHLHHH >gi|308165933|gb|AEHO01000007.1| GENE 162 169036 - 169332 292 98 aa, chain - ## HITS:1 COG:no KEGG:FMG_0943 NR:ns ## KEGG: FMG_0943 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 12 97 308 393 446 124 89.0 9e-28 MILKVQFCLIFNSITQLNELIKKSVDDRQNLLDKIKKIETEMKSLSQNMENINSINKYRE IYKCHKKNPEDKQFAEEYYSELSVYKIVVKEILENYKN >gi|308165933|gb|AEHO01000007.1| GENE 163 169828 - 172182 989 784 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804732|ref|ZP_07698797.1| ## NR: gi|309804732|ref|ZP_07698797.1| hypothetical protein HMPREF9213_0241 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0241 [Lactobacillus iners LactinV 09V1-c] # 1 784 1 784 784 1436 100.0 0 MPEIKYKNYLDHEIHVKFVDGILKHSQNWQWFIEYIEDNYNLVDISSYIEYQKRSNSLIR ILSNFINILEICDFNFQFRTVLLQEIYEISKYYVGATERENCAKKVSSEFSKILFLSVWL TKLQNSGNNSNYIIDNRFMNQRNFHQALNMQEFDYDKDEIILYLEKIKLTDFERIKRNIE DNLNRIVYGLSENFFDMYGARLLSGNCFNFQSLDREASLTWQENTLLDMLQISIRNGEII PIYSNGDSIVPNYKGWTPDLLKQLKKHFNNQISDFVIESVDFLLNRKDPNIKTIESHCKL FLKLISKGEDYEILTSSTYEILTKLFDEGVMNRIEKTEVIKEFYKNLHSITSVNLLVRLS SSFYLRKDQMQSVKDYMENKYRAISYINDIPTLTQYLENTDIARHINQFYYDETKDRFLK LIKDVNDISVANLFYQAMLFLISVNQTNQIVDKRIVKQDMINIQEYWQKNKYQEQVKNLQ EFTYGTQISTEEVEKYNKSIMENPIIVANSTILAKVDDLISVLEETSKHAVIHMVSRITL NNIFPIKDTGINFDRHETDNILKKQVEKIIERYGYKFINVLDVGIYVAAIHERYKNNVYS VIALFKKEKELYALLEEIIGVKLIPFNEQISLGHLTQLFPLLEIEIRQLGKLFGIVPFKE NVDEFMKFKDPSSILRELIEDVYEELDGFESAPDLLFVYHFMYNSNSLNIRNECIHGRDY FEGYMLKFAFKVTMLALYMIRYRINLILDNSSSYNEGLVQKKNSDFRFKKECESNLFPWY QFPT >gi|308165933|gb|AEHO01000007.1| GENE 164 172744 - 172929 204 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804694|ref|ZP_07698759.1| ## NR: gi|309804694|ref|ZP_07698759.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] # 1 61 1 61 61 94 100.0 3e-18 MKELDVVRLKEDYKEISKGTKGTIVLIYDDKNCEVEFFDKEGDTIDVVMTPLKKLELIES F >gi|308165933|gb|AEHO01000007.1| GENE 165 172929 - 173261 244 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500974|ref|ZP_05743876.1| ## NR: gi|259500974|ref|ZP_05743876.1| ATP-dependent RNA helicase [Lactobacillus iners DSM 13335] hypothetical protein LineA_01035 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9210_1236 [Lactobacillus iners SPIN 1401G] ATP-dependent RNA helicase [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9210_1236 [Lactobacillus iners SPIN 1401G] # 1 110 1 110 110 160 98.0 4e-38 MKKLIIMLDYISGPLWKDIYDTKKKELVTGIDVVDDDEYIQNLNDVISDLYSSYYKINYN DEPVYFDKKQEKKDKYKMLDLLGKLIKRLDEVNDGSFEIDDRETERFKNL >gi|308165933|gb|AEHO01000007.1| GENE 166 173261 - 173674 469 137 aa, chain - ## HITS:1 COG:no KEGG:ABC1055 NR:ns ## KEGG: ABC1055 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 2 132 30 152 156 68 35.0 6e-11 MGAGNSRLYKNTKGALKPEHLMDELRQSGVKFNEEDVVMITKTKKKRLVWLEKGNETKGL KHIIDGHEKDFKNKFGVSKENIPSAIKDIFENGTEISSKRKNNGLEQVYLYKGEYIVITG VGTNGFIVSVYPGGGSR >gi|308165933|gb|AEHO01000007.1| GENE 167 173674 - 174036 215 120 aa, chain - ## HITS:1 COG:no KEGG:Shel_18760 NR:ns ## KEGG: Shel_18760 # Name: not_defined # Def: hypothetical protein # Organism: S.heliotrinireducens # Pathway: not_defined # 1 99 41 139 161 101 43.0 1e-20 MPIVRQMYSTYMNRVMGAYYQNNGIKVIPNVRWGDSRSYEFCFEGLEKEGTYAIGSYGQI KRNSNRYYFEKGLEEFFKRLNPQKIYVYGAMPDSIFGNYINETNLISIEPYTSKIYRGDI >gi|308165933|gb|AEHO01000007.1| GENE 168 174000 - 174323 193 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500972|ref|ZP_05743874.1| ## NR: gi|259500972|ref|ZP_05743874.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_01045 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9210_1238 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9210_1238 [Lactobacillus iners SPIN 1401G] # 1 91 1 91 216 172 97.0 8e-42 MSNYKYANSGFNPKLIENVSLVGKYDMPLIKKEEIEGIKEFIPFEKRNLHNEKNVGIHFY IYDGAFKQILDNPQKYMDELKKFNAVISLIFQFAMTCLLLDKCIALI >gi|308165933|gb|AEHO01000007.1| GENE 169 174464 - 174997 545 177 aa, chain - ## HITS:1 COG:BMEI1683 KEGG:ns NR:ns ## COG: BMEI1683 COG2856 # Protein_GI_number: 17987966 # Func_class: E Amino acid transport and metabolism # Function: Predicted Zn peptidase # Organism: Brucella melitensis # 4 163 6 165 182 83 32.0 2e-16 MGGYIADPLSRKDIRKLANRLRELFGLERDINFPIVQVIEFLSNKGELNLEICTSDDMGS KLGETISSENLIKLREDIYDKACEDDGFSRSTCSHELLHWIKHREETVSFCRKEEDLKNR RAYEDPEWQANCFSGELLVPKHLVKGMTIDEIVQKCNVTPSMAYYQYKKYEEEGWEE >gi|308165933|gb|AEHO01000007.1| GENE 170 174999 - 175301 215 100 aa, chain - ## HITS:1 COG:no KEGG:Fisuc_2499 NR:ns ## KEGG: Fisuc_2499 # Name: not_defined # Def: hypothetical protein # Organism: F.succinogenes # Pathway: not_defined # 4 98 23 117 119 69 38.0 4e-11 MKEMATKLDVSSSFLSAVENGKKKMPESWYDTIVNLYNLDKEKQDELMTAIEESQKSLEI NLEDLSKEKKRLAFSFARELENMNKEEVDKMKIFFKKDGE >gi|308165933|gb|AEHO01000007.1| GENE 171 175768 - 176343 498 191 aa, chain - ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 32 151 239 365 368 65 31.0 4e-11 MSDIDLINGKVRFINNLHYSSKLNYELVPYLKNDASRRTVTIDAELLEVLKKWKKEQAKY NIHDFVFSCDHCPLNKSTLSVWLKRYSKLAGVSRINGRGLRHSNASYLIAELGADVLTVS HRLGHKTPMTTLKYYAHMFSNNDIELASKMEGSMDIQPASHSKIHFNGNQHIKGNSITGM PKVCQNKKKPA >gi|308165933|gb|AEHO01000007.1| GENE 172 176325 - 177005 471 226 aa, chain - ## HITS:1 COG:no KEGG:LAR_1502 NR:ns ## KEGG: LAR_1502 # Name: not_defined # Def: phage integrase # Organism: L.reuteri_K # Pathway: not_defined # 2 220 6 228 405 177 41.0 2e-43 MKTRYPNVYQDKNGKYFYQIFIGTDANGKKKLKKGRRDALKHPFSSAYQAYKEAQRVQAL YANVSADNISYASFMKDRYLPKYRGDVEASTYDTHNLMMLKGVDFLGEIKLKDIKVIDCE KYRTWLLTDSGFSRNYASLIYTAFRQSLDYAVEIGLIASNPSLKTKSIPKGRNIENYWTM PEFEKVLASINTDTFYEELIYVTFLFYYRIGCRVNEGFALRCQILI >gi|308165933|gb|AEHO01000007.1| GENE 173 177002 - 177205 295 67 aa, chain - ## HITS:1 COG:no KEGG:LAR_1503 NR:ns ## KEGG: LAR_1503 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 3 66 2 65 71 69 54.0 4e-11 MKKEFVNYKDLRQLGFGDNQARRIIRLAKKKLVEKGYAFYNGKRVGLVPAKAVAEVIGVP FKEDDNF >gi|308165933|gb|AEHO01000007.1| GENE 174 177276 - 177794 617 172 aa, chain - ## HITS:1 COG:no KEGG:LC705_01954 NR:ns ## KEGG: LC705_01954 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 4 155 128 278 281 114 42.0 2e-24 MVLVSILVVLEPQASGSWHLHGLIKKKNGKLPYLDNNSVIAPMWRQGFTKTKRLKDSDNV AAYLMAYLTDMPKDEIMPNVKSKSILKGARLHFYPSGVHIYRNSRGIKRPTNFKGFKGQV LKDLGLSEDVTADATFNRKQKLKDGKRLIHITEFYDNIPDKKKTNHARQDND >gi|308165933|gb|AEHO01000007.1| GENE 175 177895 - 178158 214 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256844384|ref|ZP_05549870.1| ## NR: gi|256844384|ref|ZP_05549870.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 87 7 93 137 164 98.0 3e-39 MHQKIKKINKHAAVNVHLYGDVLEMTDYKPRKQRIKPLSKDNYVDLATGEVKDYHRNSQR IQSTENLRKTFKNLRRLIIGNFQAGDI >gi|308165933|gb|AEHO01000007.1| GENE 176 178249 - 179088 571 279 aa, chain - ## HITS:1 COG:no KEGG:lhv_0264 NR:ns ## KEGG: lhv_0264 # Name: not_defined # Def: FtsK family DNA segregation ATPase # Organism: L.helveticus # Pathway: not_defined # 3 259 5 260 270 236 45.0 6e-61 MSYLLTLSKSLSIDAYKKINFLVAGVRGSGKTYGTLILIAELASFPRISPCEFLGTAQLP TQIYCVDFKNSALARLGDILPTGRVATNKEDAIKVVSDYDGKMHERLAFLRDKEFGATAG ALGMPMYYLLIDEWSATNASFNQGMTKADKDLRYKWNSLITDISMLNRVPGFGLGIISQQ ISVVNSGLNSSVQEEAGLKLHFGDANMNSYRLTFGNDIQIPEMRLETGEAYAWIEGLTSS GYVIPFCMPEIEPDKLWDYLKQALSNTQDDKKYLFFTSQ >gi|308165933|gb|AEHO01000007.1| GENE 177 179090 - 179647 525 185 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500962|ref|ZP_05743864.1| ## NR: gi|259500962|ref|ZP_05743864.1| hypothetical protein HMPREF0520_0472 [Lactobacillus iners DSM 13335] hypothetical protein LineA_01100 [Lactobacillus iners AB-1] putative lipoprotein [Lactobacillus iners LactinV 11V1-d] putative lipoprotein [Lactobacillus iners LactinV 09V1-c] putative lipoprotein [Lactobacillus iners LactinV 03V1-b] putative lipoprotein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF0520_0472 [Lactobacillus iners DSM 13335] putative lipoprotein [Lactobacillus iners LactinV 11V1-d] putative lipoprotein [Lactobacillus iners LactinV 09V1-c] putative lipoprotein [Lactobacillus iners LactinV 03V1-b] putative lipoprotein [Lactobacillus iners LEAF 2062A-h1] # 1 185 1 185 185 391 100.0 1e-107 MPTRTRKPQEGGTPEKVIPPLGWLFLACAIALFILAFQVPWFGQYCIFFGICSLVLALGC LGYWVYLHYDEIRFGGLLHSKNVDLSVIYSPKMKAFLYQSNTTAPDPYDPRYQQLPHVRK TRDGLRIEAIGKLRQWLISDQFRDSLEAFLNYNRCNISIQNAQYHSDGWVYFTIIRGIKN DRLRW >gi|308165933|gb|AEHO01000007.1| GENE 178 179647 - 180012 453 121 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256844381|ref|ZP_05549867.1| ## NR: gi|256844381|ref|ZP_05549867.1| predicted protein [Lactobacillus crispatus 125-2-CHN] predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 121 19 139 139 213 99.0 4e-54 MALKGLRDFVKFDAKGFLAGKQLLLMQESELKDFDSGKVIGAKLKVTIWTDDTQYKKDET SNEGSELDVKILGLTAEKVDRNNRGFIKLKNPSGVVFGDFQNQLSLKADGFDFVKERGGE N >gi|308165933|gb|AEHO01000007.1| GENE 179 180587 - 181810 1183 407 aa, chain - ## HITS:1 COG:no KEGG:BSU06780 NR:ns ## KEGG: BSU06780 # Name: yeeC # Def: hypothetical protein # Organism: B.subtilis # Pathway: not_defined # 11 405 8 380 382 263 42.0 9e-69 MKIDNARPIRSLDDIFNDPAANELLAKPKKKRVTYDPEVEKFKEIENWVKEHNGKEPEKT TDLSRLGERKLASRLKGIREDLERIELLKPYDELGLLKTENQNVSLKEKVSQEKKTFNSL DDILNDDSALFDNSGQSLNSKLFDTGSLNAYKKSQENVAKNKSKRKAMDDFNKYRPLFKQ VQAELTSGKRHLIRYGNNKLKLHGFYVLKGQLMYIESIGAEFKNNNRSDTDTDARLHVIY DNGTENFPLRNGLIASLYGSKQRGGGGKIVTEPDDKFEFGEDDQVTGYIYVLKSLSNNAD VKRIQEDHPLYKVGFTSGTVERRIANAENESTYLYGPVKVVAEYQVINLNPEALETALHH ALVQYRLDVDIKAGNGRIIHPREWFVVDLNTITDIVNEIMSKLQMSK >gi|308165933|gb|AEHO01000007.1| GENE 180 181797 - 183746 1797 649 aa, chain - ## HITS:1 COG:no KEGG:LLKF_0604 NR:ns ## KEGG: LLKF_0604 # Name: not_defined # Def: DNA helicase # Organism: L.lactis_KF147 # Pathway: not_defined # 5 647 4 640 641 770 61.0 0 MQDKNVVEVNYHQTGKSTNTDELGMREMQARVYQHRNSQYLLVKAPPASGKSRALMFVAL DKLANQGVKKVIVAVPERSIGRSFKNTELVKYGFYEDWKVDPQYDLTLPGGDESKVQKLV DFLNSSESRILICTHATLRFAYEKVADDRAFDNVMVAIDEFHHVSSNDSSVLGTALKNIM HNSSAHIMAMTGSYFRGDSEPILSPEDEQLFDKVTYTYYEQLDGYQYLKSFGIDYKFYQG SYLDALPDAIDTTKKTIIHIPSINSSESTKDKYNEVDAIFDAIGTLVDRDDKTGIYTIKS KQTGKLLKVADLVNEDGREKVQEYLRNISSADDLDIIVALNMAKEGFDWPWAEQALTIGY RHSLTEIVQIIGRVTRDSSNKTHAQFTNMIEQPDAKDDAVQYAVNQILKAITASLLMEQV LAPEIHLKRRNHKSDTPSGDADILIKGLKEPTTKRAQSIIENDLPDLKAAILQDNDVKNG IAANVDAEVMNKELIPKVIMTRYPDLNNDEVEQVSQYVVADTVLRHAKVDSSVDQEGNTN EFLKMADKFINVNDLDINLIESINPFQRAYDVMSQNIDSNTLRIIERSIDAKKYDFSNEE LMQLFMNAKAFVEKTGRRPDKNSNNEEEVRMAYALATLSDMRARRNENR >gi|308165933|gb|AEHO01000007.1| GENE 181 183749 - 184462 582 237 aa, chain - ## HITS:1 COG:no KEGG:Celal_3329 NR:ns ## KEGG: Celal_3329 # Name: not_defined # Def: hypothetical protein # Organism: C.algicola # Pathway: not_defined # 5 230 2 238 241 78 24.0 2e-13 MKNRIPLVLLNDVEDQISQHFSANELIDLTYQFAQSFNKHIPIEVPDYALFNNKKELLSK NLDALSDEQKVDFLSQIKYHSRLSEDDFLRDEIDLLVKDASDGVIKARNSVSTLLETYSI DLKNQWQRTYRFYDHLDYRNALDNMRLTIELLIKRITGSEASLENQKSALGKFFEDKDIS KEVRNLFFKMLDMYEKIQNHEAKHNLPQNLNSKEIKFLMNQSTVIIKFLIDCDKGIS >gi|308165933|gb|AEHO01000007.1| GENE 182 184452 - 187172 2006 906 aa, chain - ## HITS:1 COG:BS_yeeA KEGG:ns NR:ns ## COG: BS_yeeA COG1002 # Protein_GI_number: 16077744 # Func_class: V Defense mechanisms # Function: Type II restriction enzyme, methylase subunits # Organism: Bacillus subtilis # 1 898 1 873 879 931 53.0 0 MAITEIEDEISNIIEKNDKDSFIYDFLGVYDIPKATITKLKKGINNLADVAGEVYLKNKL YYKQTDKNLMQSFTDVKAKVDELGTKPRYIFVTNFKEVLAYDTKTDNTLSIPFERLPQKF EFFLAWNGIEKADFDKENPADIRAAERFAKLYDVIVKDNPNATRKGLNLFLIRVLFCLFA EDTDIFEKNLFTNRLKELTRLDGSDLDNFIGQLFSVLDVRKEDRPVDTPSWLADFPYVDG DLFKDPHESLKFTVKSRKLIIDAGEKLEWDQINPDILGSMLQAVASEDSRSHLGMHYTSV PNIMKVIKPLFLDELRNEFDKRKGSYKKLQHLYERIGKIKFMDPACGSGNFLIVTYKQLR QLEIDILKEQNKILAEEGSGKAMMYLPSVTLDQFYGIEIDDFACDTTRLSLWIAEHQMNI KLRDEINNAVRPTLPLQHAGAIVCGNALRLDWEKILPHKKDDEVYLFGNPPYLGSHGAKQ KKTHKEDIKVVFANLNGNYKGLDYISGWFMLGAEYINNTNATLAFVATSSITQGQQVFDL WNKILNLNIEISFCWEPFTWNNNAKNNAKVTVNIIGLTSLKKANNKRIYTDNSFNNTFEK VDNISPYLTNHSTIFIKSIGSSISNLPEMDMGDMANDGGNKAPGLLFTIDEYKKIIEQHP ETKQYFKRHVGTKEYMSSTCRYCLWIEKKEYNLLNKIPVFRNRFINVYNHRQSSSDKGTN NLAITPFKFRDTKIAKEYTIVVPKVNTVGRLYIPAGLLTKDYIISDLMFGIYDGPIWVLG LILSRLHYVWIKASCGKEGKSYRYSKNLGYNTFPVPRLSSRRKKEIEGLVLKILDIRDEE EGTLNDLYGSPLAEKNPKPMNPRLLKAHQELDEVVDRAYKSNGFKGDNDRLALLLDMYSR KIKNEE >gi|308165933|gb|AEHO01000007.1| GENE 183 187474 - 188379 854 301 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804683|ref|ZP_07698748.1| ## NR: gi|309804683|ref|ZP_07698748.1| hypothetical protein HMPREF9213_0260 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0260 [Lactobacillus iners LactinV 09V1-c] # 1 291 1 291 301 547 100.0 1e-154 MKEIPEAEDLNRKAEENPKYEKLIQPEDILLGVSVIDSGKSDKSYYRALASANYINNIIN FLNGFNHKPSRVLELSQHIIQEDGLYQFTNKSGHFSTKQTPGILEDGWSTSTGINPDNRK KANMNFDKRWLPIIPLIVEDSNKLTPLQKQCARAIDWIGDGIVNSNQTKQFLQIMISLET IVEQDPDKLKDKLEKDKLWKEGLSVSIEDQLVSIINLTCYQGVQPQQLKKSDAAIKRAYG LRSRITHDGEKFPQVDATEMLNTWYGLIYTIITDVMFTSRWNNVYDLWKAANLNIKNNKK N >gi|308165933|gb|AEHO01000007.1| GENE 184 188400 - 188741 312 113 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804745|ref|ZP_07698810.1| ## NR: gi|309804745|ref|ZP_07698810.1| hypothetical protein HMPREF9213_0261 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0261 [Lactobacillus iners LactinV 09V1-c] # 1 113 13 125 125 182 100.0 7e-45 MSEDYDMRKDPNLYAVKFGNRLLFITKGAHEDFVNLLENVEIVFNAENIEYDIDQISSKL EKFVDNIVSNNEPYNLDMINSFIDSIKNQIIRFISLDYLILHIKEKLVLVKTL >gi|308165933|gb|AEHO01000007.1| GENE 185 189009 - 190547 1875 512 aa, chain - ## HITS:1 COG:SP1445_2 KEGG:ns NR:ns ## COG: SP1445_2 COG0519 # Protein_GI_number: 15901295 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Streptococcus pneumoniae TIGR4 # 197 512 1 316 316 500 75.0 1e-141 MRDFDKIIVLDFGSQYNQLITRRLRDFGIYSELLSHDLSAEKIKEINPKGIIFSGGPNSV YDQDAMRIDSDIFKLGIPILGICYGMQLISHVFGGKVERAENSEYGRADISVADATEGLF AGLPVKQTVWMSHGDLVTQVPAGFTTIASSVNCPIAAIANAEENIYGIQFHAEVRNSEYG LDILKNFAFNICHAEANWTMDDFIGMEIEDIRQTVGNKKVILGLSGGVDSSVTATLLHRA IGDQLTAIFVDHGMLRKNEAEQVMAALNKELGINIIKVDAAERFLSKLAGVTEPERKRKI IGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKDMHFSLI EPLRKLFKDEVRVLGEKLGLPHDLVWRQPFPGPGLGIRVIGEITAEKLAIVRESDAILRE EIKNAGLQEDIWQYFTVLPGIRSVGVMGDGRTYDYTIGIRAVTSIDGMTADFAHIPWEVL QKISTRIVNDVDHINRVVYDITSKPPATIEWE >gi|308165933|gb|AEHO01000007.1| GENE 186 190898 - 191476 428 192 aa, chain + ## HITS:1 COG:BH1514 KEGG:ns NR:ns ## COG: BH1514 COG0503 # Protein_GI_number: 15614077 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Bacillus halodurans # 1 191 1 191 198 204 55.0 1e-52 MEILEKRIRQDGELLPGNVLKVNSFLNHQIDPDLMFAIGQEFGKLFNGEKITKILTCEAS GIAPALTTGLIFHVPVVFARKSKPSTLNKECYETEVFSYTKQVTNKINVDKKFLSKDDSV LIIDDFLANGEAVKGLINIAKQANSKVAGVGIVIEKTFQGGSKWIIDNGYHLESLARIAN FDNNTVHFVGEE >gi|308165933|gb|AEHO01000007.1| GENE 187 191476 - 192759 399 427 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 14 425 19 423 447 158 26 2e-37 MDKQNTNLGKQAILGLQHLLAMYSGAVAVPMLIGTALHFNSAQMTYLISIDIFMCGLATA VQLFRNKYFGIGLPVVLGCAIQAVAPLQMIGQHFSITTMYGAIIVAGIFVVLISSQFARI KKLFPPVVTGSLITVIGLSLIPIAFQNIGGGNSLAKNFGDIKCLATGFATVLIILAFQAF GKGFLKSISILLGLIFGTMIASTLGMVSLEPVAQASWFHLPQPFYFGAPSFEISSCITMI IIAVVSMVESTGVFLAIGNIINKDITKQDLTKGYRAEGLAQILGGIFNTFPYTTFSNNVG VLELSGITSKKPIYWAAGFLMLMGLLPKIGALVSIIPVSVLGGAMLIMFAIVVVQGVNML SQVDISKSENILIIATSIGLGLGVSVYPQIFQQLPKTLQLFLGNGIVVASFSATMLNLLF SKRNKKK >gi|308165933|gb|AEHO01000007.1| GENE 188 192836 - 193198 503 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161506945|ref|YP_001576899.1| 50S ribosomal protein L7/L12 [Lactobacillus helveticus DPC 4571] # 1 120 1 120 120 198 86 2e-49 MALETDKIIEALKGASILELNDLVKAIEEEFGVTAAAPVAAAATADAAAAKTEFDVELTE IGQEKVKVIKVVKEITGLGLKDSKDLVDGAPKNIKEGVSEAEANDIKAKLEEVGAKVTVK >gi|308165933|gb|AEHO01000007.1| GENE 189 193243 - 193758 701 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525593|ref|ZP_03955642.1| 50S ribosomal protein L10 [Lactobacillus jensenii JV-V16] # 1 171 1 171 172 274 80 2e-72 MEVNSLSKAAIAAKEKYVDAFSEELKAAKSLLVVDYLGLTVDEVTSLRKELRESDVKMKV VKNTYLKRAAEKAGIEGLDETFSGPSAVVYTDNADDITEPARIVSKYAKDIEALSIKGGL LEGRVTSEEEIKQIASIPGREGLLSMLVSVLQAPVRNVAYAVKAVAESKGE >gi|308165933|gb|AEHO01000007.1| GENE 190 193986 - 194678 1031 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855647|ref|ZP_04645947.1| ribosomal protein L1 [Lactobacillus jensenii 269-3] # 1 229 1 229 230 401 88 1e-110 MPKHGKKYLEAAKLVEAGKFYTVDEAMELVKKTSYAGFDATVEVSFNLSVDPKQADQQIR GSLVLPNGTGKTQKVIVFAEGPQAEAAKAAGADEVGSDDLVEKVQNGYFDFDVVVATPMM MAKVGRLGRVLGPKGLMPNPKTGTVTMDVAKAVENVKAGQVEYRVDKQGLIHAPIGKVSF ESAKLAENFNALREVILRARPAAAKGQYMKSVAVSATFGPGIYLDPMTLM >gi|308165933|gb|AEHO01000007.1| GENE 191 194775 - 195200 689 141 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525597|ref|ZP_03955646.1| 50S ribosomal protein L11 [Lactobacillus jensenii JV-V16] # 1 141 1 141 141 270 97 5e-71 MAKKVINVVKLQIPAGAATPAPPVGPALGQAGINIVGFTKDFNARTADQKGMIIPVVITV YEDRSFDFITKTPPAAVLLKKAAKVEKGSGEPNTKKVAKVTKAQVKEIAETKMQDLNAAD VEAAMRMIEGTARSMGFEVED >gi|308165933|gb|AEHO01000007.1| GENE 192 195342 - 195893 704 183 aa, chain - ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 6 180 2 177 178 185 56.0 4e-47 MVESSKKQWYVLHTYSGYEEKVKKDVLSRAQSMGMQDYIFRVIVPEVKKNEVVRGQEQKV DEKVFPGYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYDDEIKRILADQNKE AAPQSYDFEVGETVTITEGPFKNMEGKINSIQTDKEKLLVSIDMFGRETNAELDFTQVKK FEA >gi|308165933|gb|AEHO01000007.1| GENE 193 195971 - 196138 142 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500946|ref|ZP_05743848.1| ## NR: gi|259500946|ref|ZP_05743848.1| preprotein translocase subunit SecE [Lactobacillus iners DSM 13335] preprotein translocase subunit SecE [Lactobacillus iners AB-1] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 11V1-d] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 09V1-c] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 03V1-b] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 01V1-a] preprotein translocase, SecE subunit [Lactobacillus iners SPIN 2503V10-D] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 3008A-a] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2062A-h1] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2052A-d] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2053A-b] preprotein translocase subunit SecE [Lactobacillus iners ATCC 55195] preprotein translocase, SecE subunit [Lactobacillus iners UPII 143-D] preprotein translocase, SecE subunit [Lactobacillus iners UPII 60-B] preprotein translocase, SecE subunit [Lactobacillus iners SPIN 1401G] preprotein translocase subunit SecE [Lactobacillus iners DSM 13335] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 11V1-d] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 09V1-c] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 03V1-b] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 01V1-a] preprotein translocase, SecE subunit [Lactobacillus iners SPIN 2503V10-D] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2053A-b] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2052A-d] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2062A-h1] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 3008A-a] preprotein translocase subunit SecE [Lactobacillus iners ATCC 55195] preprotein translocase, SecE subunit [Lactobacillus iners UPII 143-D] preprotein translocase, SecE subunit [Lactobacillus iners UPII 60-B] preprotein translocase, SecE subunit [Lactobacillus iners SPIN 1401G] # 1 55 1 55 55 95 100.0 2e-18 MFKFIKEVIASMKKVTWPTLEQNRRDTSTVVWCSILFAAYLGVLDFIFQQLVKLL >gi|308165933|gb|AEHO01000007.1| GENE 194 196144 - 196293 230 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518502|ref|NP_964432.1| 50S ribosomal protein L33 [Lactobacillus johnsonii NCC 533] # 1 49 1 49 49 93 85 8e-18 MVVKKASLACTICGSRNYSIAASKSRTQRLELNKFCKYCGKKTLHKETR >gi|308165933|gb|AEHO01000007.1| GENE 195 196432 - 197697 1209 421 aa, chain + ## HITS:1 COG:PA2589 KEGG:ns NR:ns ## COG: PA2589 COG0477 # Protein_GI_number: 15597785 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 40 420 27 402 404 88 25.0 3e-17 MIFIDYILLESRLFIVTNQRSIYAWWIFIVSCLISLIGFGLIVNTVGLFFIPLCKELHVN KSSISLMVTLQNLASAITLLIAGKIMSKVNLKWLLTILFAIIGIGFLSLSIANNLGGFYI VYIIIGICQPGAFILSIPVLLQKWFNAKLGTVMGIALGLSGIGGTIFNPLVADVIKSFGW RGGFIFEALLILLILVPASLTIIPQPNDKHHAYGEPSKVDHVKPGNESGLTFKQARKTIV FYSLAIAMFLLQFVSGSVQHVSGSILHIGFSIQTAGLVVSGIMFGAALGKISIGFLLDYF NAKVVLLFFALFGIGGWYGQIVLKNGLSLILSAFILGLGQGICLVALPYLIKKEFGVKDY SNILSIINMVGALALSFAVLIDALLFDTTNSYNIGWYLNILAFLISFILLALTLKNYPNK K >gi|308165933|gb|AEHO01000007.1| GENE 196 197811 - 198356 465 181 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0345 NR:ns ## KEGG: LGAS_0345 # Name: not_defined # Def: ComX # Organism: L.gasseri # Pathway: not_defined # 6 181 9 185 185 152 46.0 4e-36 MSDSELIMRVKQKDNDALQQLFVRYKPVVNKIKAQYYVRNYDYQDWDQEAMIVCYEACCL YDFERNSQFGAFYKTKFTNHVRSLLRYELAKRREANRTAISYEYGNDAGIIMEKFTNDYK LPISEIYSQFLSNLSELELLSILVYLGKLSHQQACKIGRCDRLKLLQAKARCKRKLKDEL F >gi|308165933|gb|AEHO01000007.1| GENE 197 198469 - 199092 496 207 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 1 203 48 252 255 195 48 1e-48 KEKIIVQSVPKSKLDKLVDQQNHQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIE DPHNLGSILRTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTL KDKGYWFFGTAMSGDNYTNWDARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSL NAGVATGILLYQMFNSRQAVKNGQIKQ >gi|308165933|gb|AEHO01000007.1| GENE 198 199080 - 199244 245 54 aa, chain - ## HITS:1 COG:no KEGG:LJ0402 NR:ns ## KEGG: LJ0402 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 5 53 3 51 251 80 75.0 2e-14 MKSDSNNVDFVFGRHAGLDFLRTQDASLINKIFLQNGVQASIADQVYQLAKKKK >gi|308165933|gb|AEHO01000007.1| GENE 199 199225 - 199668 320 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 13 140 9 136 141 127 50 3e-28 MLKPKKIVEKDIDPNTIGSLALAYLGDGVYEAAIRQHLVKGGIVRPQHLQGYATHYVSAK AQAGLITKMKELNKLTAEEIAIFKRGRNANSYTHAKNTSISTYKLSTGFEAMIGYLYLSK QYDRLDNLIAWCIEQVENGENNEKRFE >gi|308165933|gb|AEHO01000007.1| GENE 200 199655 - 200998 1237 447 aa, chain - ## HITS:1 COG:L0348 KEGG:ns NR:ns ## COG: L0348 COG0215 # Protein_GI_number: 15673833 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Lactococcus lactis # 1 443 24 446 448 466 52.0 1e-131 MYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYEVKYISNFTDVDDKMINQARKENVS VADLADRYIKAFVADTTALNIKPATFNPRATEEITDIISFIKVLIAKGYAYVVDNDVYFR AKKFTKYGCLSGQNIDELEEGASQHISVEEQKKKEDAIDFALWKGQKTLDEIAWNSPWGK GRPGWHIECSVMSTKYLGNTIDIHGGGQDLQFPHHENELAQSEAKTGQKFVNYWLHNGFV TVGEKQEKMSKSLNNFITVHDLLKKVDPQVLRFYMSSVQYRKPINYTEDGLRQAETVLKR YKNILRNIEERLSEKNDATDSDLAERLIDAKKKFIAAMDDDFNVQNALSVMHELTLHVNV HLNNDFIDHKNLQDFVQLMDEWLLIFGVKITTEMENDDTVQKLVDQRNLARQNKDWATSD QIRDELLAKGIILEDTPQGTRWHHVKA >gi|308165933|gb|AEHO01000007.1| GENE 201 201186 - 202685 1610 499 aa, chain - ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 4 491 5 488 491 545 56.0 1e-154 MAKEKIRVRYAPSPTGHLHIGNARTALFNYLFARHNKGTMVLRIEDTDQKRNVEGGSKSQ MENLHWLGIDWDEGPDVGGEYGPYRQSERKDIYNKYIQQLLDEGKAYYSYTTSEELEAQR EEQRAMGIAPHYTYEYEGMTADEIKQAQAAAEAKGLKPVVRIHIPERRTYAWDDMVKGHV SFESDTIGGDFVIQKRDGMPTYNFAVVIDDHLMEITHVLRGDDHVANTPKQLVVYEAFNW TPPKFAHMTLIINAATGKKLSKRDESVLQFIEQYRDLGYLPDAMFNFITLLGWSPVGESE LFGRKELIKLFDPKRLSKSPAAFDKKKLEWVNNQYVKNADRDTLLDLSLNNLQEAGLVEQ DPNPEKMEWIRQLVNIYSVQMSYTKQIVDLGRIFFEEEPKLTETELDEIKNDDARPVIEE FKKQLSQVPRFTAVQAMNAIMATRAATGVKGRKLFMPIRIAATRSMIGPGIGEAIELMGK ERVMHHLELTLTELNEANI >gi|308165933|gb|AEHO01000007.1| GENE 202 202764 - 204143 1303 459 aa, chain - ## HITS:1 COG:L0303 KEGG:ns NR:ns ## COG: L0303 COG1066 # Protein_GI_number: 15674046 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Lactococcus lactis # 1 458 1 452 453 532 58.0 1e-151 MAKLKTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITAIGNND PKKLSEIDIKKQIRITTPFSELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSISNA HKVLYVSGEESASQIKMRAERLHISDTELLLYSETNMENIREQIVDLKPEFLVIDSIQTM NEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILEHMVDTVLY FEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPNSTGSAIVV SLEGTRPILADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNLMLQNQDAFLTA TGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGLTGEIRRINNIEARVKEAATR GFKRIFVPKYNVSAKLQSHTTIEIVGVISLMEALKIEFT >gi|308165933|gb|AEHO01000007.1| GENE 203 204220 - 204693 466 157 aa, chain - ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 145 1 115 150 101 42.0 5e-22 MKKRGFEVVSKYRDANINLPQRQTKGSAGYDFEAAVDMTIPSIWSLNFVRIFRLIRNQHI LNEFDFEKAEKIIKPFLVPTGIKSYMGDDEVLILANRSSNTFKRNLSLPNGIGVVDSDYY NNDNNEGEIFFQFINYGVRPFKIKKVIELDKEFLCHF >gi|308165933|gb|AEHO01000007.1| GENE 204 204841 - 206187 1394 448 aa, chain + ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 1 448 4 445 445 462 52.0 1e-130 MTKEITSAIIDNFEKDFASRKDSQIAARAVQQNGIFKASQNLQTKVNLDPTFSIEIETGK VANQKASGRCWMFSALNTMRHPLQKNFKIKDFELSQNYTNFWDKFEKANWFFENVISTAN DDLGDRKVSFLFGTPQQDGGQWDMLCGIIEKYGIVPKYIYPETFSATASSALNDTLNTLL RKHGLELRKLVQNGTSSEDVQSRKDEMLKEVYRVLAISLGVPPKTFDFEYKDDDNQYHRD ANLTPKEFFKKYVGWDLSQYISTINAPTADKPFHKVFSVEYLGNVVDGRQVRHLNLPIDE MKDLIIKQLKSGEVVWFGSNVVKNSERQEGLLDTELYKRNELFDIDLNLSKADALNSGES LMDHAMVITGVDLVDSKPTKWKIENSWGEKPGFKGYFVMSDAWFDSFVYQAVVNKKHLSA ELKEIFEDGSKAPIQLLPWDPMGALAKF >gi|308165933|gb|AEHO01000007.1| GENE 205 206228 - 206578 331 116 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_01690 NR:ns ## KEGG: LAC30SC_01690 # Name: not_defined # Def: 2',3'-cyclic nucleotide # Organism: L.acidophilus_30SC # Pathway: not_defined # 9 116 204 311 311 178 77.0 7e-44 MCIFLISIFSFNDKFTEKYGTYRNVVNLAKTEQEAIEQFKLPFFVFKFHHKHFLISAKPI RNEMLDPIKKVKGTWIYTTGLYNVADFLKDYPVNEQSHVHQFNLDHIDAKRLLYIW >gi|308165933|gb|AEHO01000007.1| GENE 206 206636 - 207163 559 175 aa, chain - ## HITS:1 COG:FN1603_1 KEGG:ns NR:ns ## COG: FN1603_1 COG4639 # Protein_GI_number: 19704924 # Func_class: R General function prediction only # Function: Predicted kinase # Organism: Fusobacterium nucleatum # 1 142 1 137 174 74 31.0 7e-14 MRKIFLLRGAPGSGKSSLISRNHLQPYAISRDAIRLLLANLTFYHDQETDTLHQVIRHSV SDEEEQILDSLVERKMQWGETIIVDGTHITPDKIEHFKPWVDKYRYDLFVIDLMYNNTLE GLLKRNKVRAQYDWVRPEIITWMYNQYVEHRAVPDWAIEISPLGIERALSQKEKI >gi|308165933|gb|AEHO01000007.1| GENE 207 207227 - 207904 496 225 aa, chain - ## HITS:1 COG:NMA1801 KEGG:ns NR:ns ## COG: NMA1801 COG0588 # Protein_GI_number: 15794692 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis Z2491 # 2 221 1 224 227 203 47.0 2e-52 MVKLVLVRHGESIANANNTYTGWDDVALSPLGITQAQQAGYKLKKVDNFLPTAIHTSVLS RAIVTANIIADICNFLYLPIYKTWRLNERHYGALRGMNKKISKRVYGTKQVLSWRRGFES VPPLLATPSNDRRYQIGDLKNIPRGESLHQTQNRLMPYYYDHIASKLLLGQDQLVVAHGS SLRALIKKIENINDQDIVKVEVANAEPIIYTLDANLKIIDKNILR >gi|308165933|gb|AEHO01000007.1| GENE 208 207906 - 208106 241 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500932|ref|ZP_05743834.1| ## NR: gi|259500932|ref|ZP_05743834.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_01240 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_1113 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0937 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_1272 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_1113 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0937 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_1272 [Lactobacillus iners SPIN 1401G] # 1 66 1 66 66 90 100.0 5e-17 MKVSIWTAIIVIIVGLYDLAYAFNRRQDLQDKSSCFKKRRMGIIGFIILGIIFVLLGVFL LFVGER >gi|308165933|gb|AEHO01000007.1| GENE 209 208109 - 208345 310 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309808408|ref|ZP_07702307.1| ## NR: gi|309808408|ref|ZP_07702307.1| hypothetical protein HMPREF9211_1071 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9211_1071 [Lactobacillus iners LactinV 01V1-a] # 1 78 1 78 78 84 97.0 3e-15 MKLDSEIFSKELALLKNKTVTLSKKIQEKEWPLIRQKTTKLVNQTKKFTVQKSKDIYHIS KKTLDRTIIDLSKRCKKK >gi|308165933|gb|AEHO01000007.1| GENE 210 208370 - 209257 722 295 aa, chain - ## HITS:1 COG:PH0896 KEGG:ns NR:ns ## COG: PH0896 COG1230 # Protein_GI_number: 14590752 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Pyrococcus horikoshii # 16 291 17 291 295 224 40.0 1e-58 MKKDYTSVKLIWITILNLIITIAEIIGGIACGSLALLSDALHNLSDTGAVILSFIAHRIS RKNKSNTKTFGYDRAEIIAAFANGITLIAICIVLFVEALLNLKNPEPIKGNMMLVVSIIG LMANILSMFAVHNDTKKNINIKSTFVHMLSDALSSVVVVIAALIIKFWNWRWIDPVLTIL VSIFILIEALKITYKAANILMESNPCIDLEQVKQRILKINEIEHVHHVHLWQYSDKLIMM DAHINVSADMKIEDLENIYVKVGQELLPLGINHITLQAERNRGLNNNMISNNNLD >gi|308165933|gb|AEHO01000007.1| GENE 211 209272 - 209961 875 229 aa, chain - ## HITS:1 COG:CAC0167 KEGG:ns NR:ns ## COG: CAC0167 COG0406 # Protein_GI_number: 15893461 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Clostridium acetobutylicum # 6 223 7 220 228 97 32.0 3e-20 MYTEIYLIRHGETMFNQLNKVQGWADSPLTVKGINDLRVTASNLSQIHFDRMYSSDLKRA IDTVHLIKDYNMVSQIGKIKKLPAFREVFFGGFEGDDIYETWRQVSIAGGMKPETNVCKI IDTLGIKEFRNATKKADERHLAENAKELDDRIMRAVHQIKEESDGLNRVLLVTHGDLIKS LGIKYWTQYSGKGDIEFPTNGSMTRGIFNQSGKFEIVDYNINNSDLINI >gi|308165933|gb|AEHO01000007.1| GENE 212 210105 - 210683 329 192 aa, chain + ## HITS:1 COG:SP0804 KEGG:ns NR:ns ## COG: SP0804 COG0693 # Protein_GI_number: 15900697 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Streptococcus pneumoniae TIGR4 # 1 191 1 184 184 147 40.0 2e-35 MVRTAVIFANGCEEIEGLSIVDILRRLNIECDMIGLDSLDITGGHNIRFKCDKLISNDLL NYDMVALPGGMGGTQLLASNIDLQNIMKKRFANKKWNAAMCAAPLAFSKFGLLKQANYTC YPGFEKNISRENPQATFVDDLTVIDNKNKLITSRGPATAMSFAYAIAQTLQCKTAEIESN MLYTYLLKKSRD >gi|308165933|gb|AEHO01000007.1| GENE 213 210698 - 211021 320 107 aa, chain - ## HITS:1 COG:BS_ebrB KEGG:ns NR:ns ## COG: BS_ebrB COG2076 # Protein_GI_number: 16078792 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 2 106 3 107 117 75 42.0 2e-14 MGYVELILAIVFEIIATAFLKLSNNFTNVWYSLGTIISYCLCYYLFSLSLKSIALGVAYA TWCGVGIIFTGIVSYLLWHESFPLPKLIGIILIIIGVVLCNLVSSHH >gi|308165933|gb|AEHO01000007.1| GENE 214 211071 - 211727 1291 218 aa, chain - ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 61 128 278 345 345 68 48.0 9e-12 PEVPVTPVQPQIPSKPEVPVTPVQPQIPSKPEVPVTPEQPKTPSVPEVSVKPEKPQTPSV PEVTVKPEKPQTPSKPEVTVTPEQPQTPSVPEVPVTPETPKTPSVPETPETPEKPQTPSA PEVTDKPKTPSAPEVTVKPEQPKAPSVPEVPAKKANASTIVKSQITKKNKNNIVKKKSKS IFSKFKLIKRHAQKIKNAYNNCKYCSIVFSVFDCFLDS Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:38:49 2011 Seq name: gi|308165861|gb|AEHO01000008.1| Lactobacillus iners LactinV 09V1-c contig00002, whole genome shotgun sequence Length of sequence - 75367 bp Number of predicted genes - 77, with homology - 75 Number of transcription units - 25, operones - 15 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 8521 10048 ## HMPREF0424_1196 LPXTG-motif cell wall anchor domain protein - Prom 8661 - 8720 14.2 - Term 8697 - 8741 -0.8 2 2 Tu 1 . - CDS 8782 - 10128 1364 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 10174 - 10233 8.7 - Term 10150 - 10190 -0.7 3 3 Tu 1 . - CDS 10237 - 12633 2508 ## COG3957 Phosphoketolase - Prom 12694 - 12753 5.7 - Term 12731 - 12773 3.2 4 4 Op 1 . - CDS 12781 - 13506 949 ## COG2188 Transcriptional regulators 5 4 Op 2 . - CDS 13506 - 14438 1042 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 14481 - 14540 8.0 6 5 Op 1 . - CDS 14542 - 15237 737 ## COG0120 Ribose 5-phosphate isomerase 7 5 Op 2 2/0.000 - CDS 15224 - 15910 666 ## COG0524 Sugar kinases, ribokinase family 8 5 Op 3 . - CDS 15900 - 16163 348 ## COG0524 Sugar kinases, ribokinase family - Prom 16208 - 16267 10.7 + Prom 16185 - 16244 5.0 9 6 Op 1 9/0.000 + CDS 16317 - 16583 395 ## COG3830 ACT domain-containing protein 10 6 Op 2 . + CDS 16601 - 17944 1745 ## COG2848 Uncharacterized conserved protein + Term 17969 - 18027 8.1 - Term 18040 - 18078 6.1 11 7 Op 1 . - CDS 18095 - 19132 741 ## gi|309804773|ref|ZP_07698837.1| hypothetical protein HMPREF9213_0011 12 7 Op 2 . - CDS 19143 - 20354 1025 ## COG1705 Muramidase (flagellum-specific) - Prom 20431 - 20490 5.7 - Term 20430 - 20481 11.2 13 8 Tu 1 . - CDS 20514 - 20699 160 ## gi|259501621|ref|ZP_05744523.1| conserved hypothetical protein - Prom 20790 - 20849 7.1 - Term 20823 - 20862 6.0 14 9 Op 1 . - CDS 20877 - 21344 595 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) 15 9 Op 2 6/0.000 - CDS 21422 - 22825 1413 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 16 9 Op 3 19/0.000 - CDS 22827 - 23276 517 ## COG0822 NifU homolog involved in Fe-S cluster formation 17 9 Op 4 24/0.000 - CDS 23279 - 24502 993 ## COG0520 Selenocysteine lyase 18 9 Op 5 41/0.000 - CDS 24468 - 25766 1263 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 19 9 Op 6 . - CDS 25779 - 26570 904 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component 20 9 Op 7 21/0.000 - CDS 26558 - 27253 647 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 21 9 Op 8 . - CDS 27263 - 28315 1149 ## COG0306 Phosphate/sulphate permeases - Prom 28344 - 28403 11.5 22 10 Op 1 34/0.000 - CDS 28436 - 29176 281 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 23 10 Op 2 . - CDS 29169 - 30647 1370 ## COG0765 ABC-type amino acid transport system, permease component - Prom 30688 - 30747 8.8 + Prom 30787 - 30846 5.5 24 11 Tu 1 . + CDS 30883 - 31446 497 ## COG0572 Uridine kinase + Term 31454 - 31490 3.1 25 12 Op 1 6/0.000 - CDS 31466 - 32032 574 ## COG1564 Thiamine pyrophosphokinase - Prom 32077 - 32136 3.8 26 12 Op 2 10/0.000 - CDS 32163 - 32813 574 ## COG0036 Pentose-5-phosphate-3-epimerase 27 12 Op 3 7/0.000 - CDS 32822 - 33715 642 ## COG1162 Predicted GTPases 28 12 Op 4 4/0.000 - CDS 33715 - 34446 541 ## COG2815 Uncharacterized protein conserved in bacteria 29 12 Op 5 17/0.000 - CDS 34443 - 35567 1267 ## COG0515 Serine/threonine protein kinase - Term 35590 - 35621 -0.3 30 12 Op 6 3/0.000 - CDS 35636 - 36385 626 ## COG0631 Serine/threonine protein phosphatase 31 12 Op 7 . - CDS 36391 - 36798 301 ## COG0144 tRNA and rRNA cytosine-C5-methylases 32 12 Op 8 20/0.000 - CDS 36849 - 37703 655 ## COG0144 tRNA and rRNA cytosine-C5-methylases 33 12 Op 9 4/0.000 - CDS 37693 - 38637 1005 ## COG0223 Methionyl-tRNA formyltransferase 34 12 Op 10 1/0.000 - CDS 38660 - 40705 1574 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 35 12 Op 11 3/0.000 - CDS 40702 - 41049 360 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Term 41057 - 41093 5.0 36 12 Op 12 25/0.000 - CDS 41107 - 41325 288 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 37 12 Op 13 . - CDS 41327 - 41953 685 ## COG0194 Guanylate kinase - Prom 42004 - 42063 9.9 38 13 Op 1 . - CDS 42082 - 42372 181 ## gi|259501643|ref|ZP_05744545.1| conserved hypothetical protein 39 13 Op 2 . - CDS 42375 - 42797 642 ## COG1799 Uncharacterized protein conserved in bacteria 40 13 Op 3 35/0.000 - CDS 42820 - 44082 1413 ## COG0206 Cell division GTPase 41 13 Op 4 25/0.000 - CDS 44082 - 45467 1414 ## COG0849 Actin-like ATPase involved in cell division 42 13 Op 5 3/0.000 - CDS 45532 - 46368 857 ## COG1589 Cell division septal protein 43 13 Op 6 4/0.000 - CDS 46397 - 47509 961 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 44 13 Op 7 28/0.000 - CDS 47512 - 48894 1408 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 45 13 Op 8 4/0.000 - CDS 48908 - 49867 915 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 46 13 Op 9 3/0.000 - CDS 49876 - 51546 1869 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Term 51569 - 51608 1.0 47 13 Op 10 . - CDS 51632 - 52027 402 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 48 13 Op 11 . - CDS 52024 - 52389 403 ## LBA0804 cell division protein 49 13 Op 12 . - CDS 52417 - 52551 66 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 50 13 Op 13 29/0.000 - CDS 52527 - 53363 912 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 51 13 Op 14 . - CDS 53366 - 53797 493 ## COG2001 Uncharacterized protein conserved in bacteria - Prom 53845 - 53904 5.0 + Prom 53697 - 53756 4.8 52 14 Tu 1 . + CDS 53777 - 53965 172 ## - Term 53884 - 53935 2.9 53 15 Tu 1 . - CDS 53960 - 54295 270 ## LAC30SC_04000 hypothetical protein - Prom 54426 - 54485 8.3 - Term 54533 - 54585 10.1 54 16 Op 1 . - CDS 54587 - 55114 301 ## LJ0964 rod shape-determining protein MreD 55 16 Op 2 22/0.000 - CDS 55114 - 55962 909 ## COG1792 Cell shape-determining protein - Term 55974 - 56010 4.0 56 16 Op 3 . - CDS 56012 - 57055 1168 ## COG1077 Actin-like ATPase involved in cell morphogenesis - Prom 57101 - 57160 3.7 57 17 Op 1 . - CDS 57260 - 57724 491 ## FI9785_1245 DNA repair protein RadC 58 17 Op 2 . - CDS 57757 - 58434 638 ## COG0637 Predicted phosphatase/phosphohexomutase 59 17 Op 3 . - CDS 58415 - 58789 375 ## LGAS_1218 folylpolyglutamate synthase 60 17 Op 4 . - CDS 58792 - 59301 447 ## COG0285 Folylpolyglutamate synthase 61 17 Op 5 8/0.000 - CDS 59325 - 59678 315 ## COG0285 Folylpolyglutamate synthase 62 17 Op 6 . - CDS 59682 - 62321 2708 ## COG0525 Valyl-tRNA synthetase - Prom 62387 - 62446 8.0 - Term 62332 - 62366 6.0 63 18 Op 1 7/0.000 - CDS 62613 - 63812 1097 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase 64 18 Op 2 3/0.000 - CDS 63841 - 64995 934 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - Prom 65028 - 65087 7.8 - Term 65008 - 65036 0.7 65 18 Op 3 . - CDS 65096 - 66751 1362 ## COG4477 Negative regulator of septation ring formation + Prom 66850 - 66909 7.5 66 19 Op 1 . + CDS 67066 - 67692 979 ## PROTEIN SUPPORTED gi|227520659|ref|ZP_03950708.1| 30S ribosomal protein S4 67 19 Op 2 . + CDS 67735 - 69072 1462 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Prom 69247 - 69306 10.1 68 20 Op 1 . + CDS 69327 - 69611 195 ## 69 20 Op 2 . + CDS 69669 - 70142 592 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 70 21 Op 1 . - CDS 70327 - 71544 865 ## COG0582 Integrase 71 21 Op 2 . - CDS 71626 - 71829 235 ## SPH_1403 hypothetical protein - Prom 71867 - 71926 3.9 + Prom 71648 - 71707 8.7 72 22 Tu 1 . + CDS 71813 - 72064 145 ## SPH_1404 hypothetical protein - Term 72219 - 72247 -1.0 73 23 Op 1 . - CDS 72290 - 72520 263 ## SPH_1405 hypothetical protein 74 23 Op 2 . - CDS 72517 - 72939 424 ## SAG0919 Tn916 hypothetical protein 75 23 Op 3 . - CDS 72896 - 73084 106 ## gi|256960284|ref|ZP_05564455.1| conserved hypothetical protein - Prom 73162 - 73221 3.8 + Prom 73305 - 73364 7.9 76 24 Tu 1 . + CDS 73444 - 73797 274 ## SPH_1408 transcriptional regulator, putative + Term 73818 - 73881 11.1 77 25 Tu 1 . - CDS 74143 - 75183 605 ## COG0480 Translation elongation factors (GTPases) - Prom 75207 - 75266 4.2 Predicted protein(s) >gi|308165861|gb|AEHO01000008.1| GENE 1 1 - 8521 10048 2840 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_1196 NR:ns ## KEGG: HMPREF0424_1196 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: G.vaginalis # Pathway: not_defined # 1483 2490 809 1808 3173 86 23.0 2e-14 MKLSKNNIQSKLQKEAHQIPHFSIRKLTIGAASVLLSTSLYLNWNNLNALAAENSSTKHG TYDVNKKQENPPAANESLKTTNKMVDKKLVNQKVNQTDAELKAHIATAENLNSDKITPKT NQQLDLAIATAKTAIQSYSEDAKKDTAHRLKTVVLQAKKEAAEKTKKESAKSVSVDNLKA LSDQLFDKTMHLDQTKADKGELQKIIDFGIELDSFLKNKNLKAEQLNNYETNAKRMLALV DKLPKIQINAHGKSMPQSRSYADRDGEDRDFDLKNLSLHKPLSAKEFNSDQFKLQQEKNS AIAFLQYALSWNNNPQNTFVDETAGGNKVKDEEIKENAILGINVANNREQIRQWLDYVFW HKRGMFIVPQSPDGNTTGNDVFALYKPGTFLYGTHNNAKEIPTVKEIHNTVYVKNSLIKD QTGKLVGYHWTVEFNHQHADRKSGHYYFTTPKGQSIVSSNDSKNGVKFADAAIVSTDASG HSKTLTGKGYTVDSIWQNATQNDFLPADRVSGTAQGPETYYGKQSWKTYTRNGVNLWWGG GSFSRWNYIGSAHTLKDIIYKHYWQGSNYPQSGCTKLNKDEWGDEAQFTNSRDGIKMGPF IDNLYKYKYDFNKGESSDYQRIDYAQLIQENTDRVYMFESKQDDTNTYKITFDTRIDDPK STNVHNPYYAAGYHSYENKTTVNYMQWGGLRFKPELSITINGKNNNILVDPQTHNDYVEV HEGEKTKISLNSKNDKQGLAMWSTDYKSTSALSWQLGKADENLFNADYKETPVDADNNAA NPYVHQNARMELSGVVIAKPGSEMNIAWAGSGMPNFTDDDITSIYGDKTKMDDGLNAFLP NREIRSVNVRVIPAAAYAQKTKIAIRFKGQQIVLSEQEKQDIKKTIYDANKDHYDIKNGE NGITVDNSGNVSFTIQFNAAKHKGDRANMQYRTLKLKPADTLSYTTIDIKPVDGSASFSL NSKNGVIDPTLTIYNHEPYQVKVNATDTTSKMNDFLTNGGTNVTGLSTDHNEYQKNHRGM QVDDKTPYVLTMNGQGLSKDGKTYKIKFESWDGNDTKTVSQEVKVVVADQAGRYQNKVKG RTWTVEVNDKTADHLKPDNFVDDSTKAMLGKAPSGVAGKTGVTYTFKNGVPAHDHVTKGN TPKDVTVVAKFTDNSTLEIKGKLIVNDTQNPIVEFDTTDHKIVNEGNNNYRLNVYSNEKF DVAIKAHDNSNIVQDLRVKYGNTLPNWISSDEDQVQTKYKSDTKGKRDSKGTSNNPYIIH LTGTVPNNMVNQTYKVSATAWDDVDHTGTANLEIHVLPQCDKYKNLLQGNTQTIEVKEAI PDIKTFVTAKGVKLPNNVKYTYKGTGFDNTNIKEQNAVIKLTFADNSYIDVNAKLNVQDT HLATVQFASTDAHVKVSDNKYLQSTKPSDTKQSSVTITAYVNEQLGVNVNANDNSGHILD VLLSKDNGSLTWMTSNDRDYQQHNRNKAVSESHPYQIQLTGTPTTKGTSTAVIKTWDGAN HEGDIKFTINVLDQAAQFDGDKLNGATKTVEVNDNVVLSPTDFVDAKTQALLKKAANDVK YTWTTSDGKQPANNTVSTKTNGKYQPSDIKIIAKFSDGSTKTITGHLIVQDTKAPTVKFE MTPNVTGNKITIGTETSNNQKLVTITTYRNEKFSFDVKANDNSKLVSDVKLTGTTLEGTS TDHDSKKDHGTDPYKLTISGSFTPTTQTGQYTRTIQATDKAGNSSNTSFKFYVKEQAAQF DGQTLTGQTQTVTLHTKINPNEVERYVSDATKSLLKKANGNVTYSFKDMKELSTDAVSAD GKQVHVIATFSDKSTKEIIGTLIVNDKNAPTVNFVKGTNSGPVQIDNQSKTITVYRNEKF NINANVKDDSKVVKDAKLISKDAATHTEFTITTDHDSNHNHGHDPYVLNISGSFTDKAAL GNYSRTIHAVDGNNNAGDTNFKFVVKNQSAQFDSDQLNGATKTVEVNSGYTPKAEDFIDK ATKQKLDAANGTENYAFAKQPTIDKVKTETVPITVTFSDGSHKVINGTLKVQDTTVPSLK LIKTNSNKKNRVGEITCTPSDSKHKNSTATVVVYRNEQFSIQALATDNSNIINDARFHGS AADITDNHDVYQAQYRGKKGKVNDPYVVTIEGGFSKDLKFDPNTHTKTIDGSYVRAWDGV NNTNDLKIKFIVKDQSAQFDNDKLNGITKIVEINSANIPQAQDFIDPATLKKLNSAKDGI TCTFVNGKEPKIDTVKTNEKVSVVVTFSDKSTKTIQGYLTVQDTAAPVITVAKSEKGKCV VNGDQITVYNNEPFNLNVSAVDNSNHVSNITIEGTHEGVSLASDHKGEGSKAKPYTAVIS GTFNDKGTHTITLNATDASHNKGTKKLTVVVKGQDAQFDNQTLTGITKTVEVNDDSVSLK PEDFVSQDTKDLLGKATKGVKWTFVDNKELDKSKVTSANTGKEVHIKAEFADKTSKTILG HLIVQDTKAPTLELVSSDPKSKDVVVTKGSNNSYNITVYCGREFKLLAKATDNSHVVTDV NIAGGDINGFSNDHDTYIKNLAKNPKGTSKDPYVLTMKGTFANDFSTGLYTRTVTAKDAS GHSTTITMKITLKSQNERFKDEFHGYKVLVPEKLDWQQIFKAENQPVPPKDFVAIPADAP DNLSYKFECDDSGNPCIYVDFADKSSLKLSLETITADAQNKNRVAETIQRNIIIKKDGQS TTSVQKVEFIRYIILKSEGISKISSIALDKDLRSASISDEYGQWLTKSKSNDNVVTYSDN AELSKYDAKNIVGYQKVETANDTLEVKPNSNDSINKYLIEKTDENDFSPAKKIPDIVIEY KRLADVITNDGRHEKPAGYV >gi|308165861|gb|AEHO01000008.1| GENE 2 8782 - 10128 1364 448 aa, chain - ## HITS:1 COG:L196579 KEGG:ns NR:ns ## COG: L196579 COG0446 # Protein_GI_number: 15672373 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 1 445 1 445 446 551 63.0 1e-157 MKFVIVGTNHAGIAAANTLLDNYGKNNEVIMIDRNNNLSYLGCGTALWVGRQISSYKKLF YTKPADFEAKGARISLETTVNKIDFENKIVYATTKNHTEITETYDKLILAEGSAPIAPDL PGKDLEGIHFLKLFQEGMAVDQELDKSDVKTVAVVGAGYIGVEIAEAARRRGKQVLLFDA AKTCLSSYYDPEFSTLMDQNLRDHGIETHYGELAQEYLGKDGHVCALKTNKGQYQADIVI NCIGFRPNAILGGDHLKRFSNGAYLVNRNFQTSDPDVFAVGDCATNYSNALQDTTYIALA SNAVRSGIVGAHNAAGTVIEGAGVQGSNGIEIYDLKLVSTGLSVKAADKFGLSVKYVDYE DKQLPDFMPASENAKVKIRIVYEKKTNRIVGAQLASLYDMHELIHMFSLAIQEGLTMDKL QLLDIFFLPHYNQPYNYVTMAALKADKN >gi|308165861|gb|AEHO01000008.1| GENE 3 10237 - 12633 2508 798 aa, chain - ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 5 795 15 795 796 914 55.0 0 MNYDSEEYLKSVDAYWRAANYLSVGQLFLMNNPLLKQDLVATDVKPKPIGHWGTIAPQNF IYAHLNRVIKKYNLNMFYIEGSGHGGQVMVSNSYLDGSYTETYPEITQDEKGMAKLFKQF SFPGGIASHAAPETPGSIHEGGELGYCLSHGVGAILDNPDVIAAVEIGDGESETGPLATS WFSDKFINPIHDGAVIPILQINGFKISNPTIVSRMSDAELTQYFEGMGWKPYFISAYNDG QFNGYKPHMQVHHEMAHVLDQVIEEIKAIQTHARETGDSSLPTWPMIIFRVPKGWTGPKF DLDGNPIENSFRAHQIPIPVSQKQMEHKDLLTDWLKSYHPEELFEDTGYPKPIVLQNTLT GVHRMAKNPITNGGLSPKSLNLPDFRKFAVKFDQPGSVEKQDMVEWAKYLDAIAKLNPDN FRGFGPDECKSNRLFDLLDNQKRQWMEKIHQPNDENLNNSGRIIDSQLSEHQAEGWLEGY VLTGRHGFFATYEAFGRVVDSMLTQHFKWLRKAKEQAWRRYYPALNFVDTSTVFQQDHNG YTHQDPGLLTHLFEKGHADLVHEYLPADANSLLAVSDKAFKDRECINILVTSKQPRPQWF SIDEAKRLVDHGLGYIDWASTDHNAKPDVVFASTGTEPTIETLAAIDILHKEFPSLKIRY INVIDVMKLMPTSKNNAAISDQEFERLFPIGVPVIFAWHGFKPMMSSIWFERGRGKDDIH IHCYEENGDITTPFDMRVLNELDRFHLVKDAVMMTKLADTNAEFIEQIDRLLDKHHVYIR DYGEDMPEVVSWKWQGLK >gi|308165861|gb|AEHO01000008.1| GENE 4 12781 - 13506 949 241 aa, chain - ## HITS:1 COG:SP2020 KEGG:ns NR:ns ## COG: SP2020 COG2188 # Protein_GI_number: 15901841 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 236 5 236 242 129 32.0 7e-30 MADLVYRTIMHDIKEKIVNKEYDGMRLPDERSLSEHYQVSRSSMKRALELLAQEGIVFKK RGSGTFINPLYLKNRGLFKYEGSNLGITDSFSVPGKSQNIELLDYQVIKTDDDLKQDLFL TSSDFVYKIRRLRLLDDQPFLIETGFIPIKIAPDLNPDILKKSLFNYLEHQKNKRVTKSF LTITVEPSTLEDQVKLMLEPNEPVGIIEGIFFLDDGTPFEVSNMRVHYKYMKYNSFVNLN K >gi|308165861|gb|AEHO01000008.1| GENE 5 13506 - 14438 1042 310 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 6 301 7 301 306 221 41.0 2e-57 MKRIPLIISTDPGIDDAAALTISLFAQELDVRMIVATWGNVSLKHTLDNALRLETFLKTT VPVVKGSAAPLIRDAISAADVHGISGMVGYQFPEADLSLLKRGNAIELMHQEINKQKEKV TLVALGPLTDFALLFKQYPEDISKIDKLFIMGCNIGRGNYTPLAEYNIACDPEAAAIVFN SGLKIVVAPLEIGRQAAILPDDMSSIKAHGRVGEMLYGILTGINEESVSGGTEIYDATAI GMLLDPQMYTFSRAHVEIELTGKYTYGASVIDFSDKACTKYNAEIAVAVDHKIFTDWFLK VTQSAEMEKK >gi|308165861|gb|AEHO01000008.1| GENE 6 14542 - 15237 737 231 aa, chain - ## HITS:1 COG:L0045 KEGG:ns NR:ns ## COG: L0045 COG0120 # Protein_GI_number: 15674215 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Lactococcus lactis # 7 224 2 218 224 191 47.0 8e-49 MQKTKQDELKQEAAKKAALMVEPNSVLGVGTGSTVAFFIDELAKINREKALNLKAIVTTS NRSRAQLEKQGFKVNELSEVDQIDLTVDGADRVDLNLNGIKGGGGALTLEKNVAVNSKKN IWIVDETKFVDRLKGFALPVEVLPISCEQNFRTFSQEGLLPKYRLDDNGKRYITHYGNFI IDLHVDPIPFPNVLAHYLDSVVGVVEHGLFLNICNEVIIAHSDGKIEIRKR >gi|308165861|gb|AEHO01000008.1| GENE 7 15224 - 15910 666 228 aa, chain - ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 3 211 89 296 304 179 48.0 5e-45 MLTKKQQTGQAYILLQETGQNSIIIQHGANYDLTEADIMQAKDEIQTSDFVIAQFETPLA PTILAFKLAHQAGKKTILNPAPAKANIPEELLKVTDLITPNETESEIITGIRVTDLESMK RSAEFYHQLGIGGVIITLGEKGCFVSTSKVSKLIPAFKVKAVDTTAAGDTFIGALSSELQ ADFANIEASAIYASLSSSFAVQKLGAFPSIPKRDIVEAALKEINYAKN >gi|308165861|gb|AEHO01000008.1| GENE 8 15900 - 16163 348 87 aa, chain - ## HITS:1 COG:YPO0008 KEGG:ns NR:ns ## COG: YPO0008 COG0524 # Protein_GI_number: 16120361 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Yersinia pestis # 3 84 5 86 308 76 45.0 1e-14 MKKVTIIGSINVDNIMHIKALPKPGETVAMSAFSQAAGGKGANQAIASARAGNKTVFVGR VGDDSNGEYMLREFSENEIDTAYINVN >gi|308165861|gb|AEHO01000008.1| GENE 9 16317 - 16583 395 88 aa, chain + ## HITS:1 COG:MA3235 KEGG:ns NR:ns ## COG: MA3235 COG3830 # Protein_GI_number: 20092051 # Func_class: T Signal transduction mechanisms # Function: ACT domain-containing protein # Organism: Methanosarcina acetivorans str.C2A # 4 88 7 92 92 61 38.0 3e-10 MNAILTVYGQDKVGIIAQTSTYLAEQKINILDVSQTIMGNNFVMMMSVQLPKGADFMVIN HGLAQIAKNLSVEINLRNNELYDAMHQI >gi|308165861|gb|AEHO01000008.1| GENE 10 16601 - 17944 1745 447 aa, chain + ## HITS:1 COG:lin0538 KEGG:ns NR:ns ## COG: lin0538 COG2848 # Protein_GI_number: 16799613 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 447 1 451 451 609 72.0 1e-174 MEINKIFETSNMISQENLDIRTITMGISLLDCIDSDSDVACQKIYNKIMKSAQNLVKVGR EIEAEYGIPITNKRVSVTPISLIAAACKDQDYVKYAKTLDRAAQELGIDFIGGFSALVQK GYQKGDHILIKSLPQALAETKYVCASVNVGSTKSGINMDAVKEMGDIIVAGSKLNFMTNA KLVVFCNAVEDNPFMAGGFHGISEPDVVINTGVSGPGVVKAALEQIKGQSMDIVAETIKK TAFKITRMGQLVGTIAADKLNVPFGIVDLSLAPTPAVGDSVAEVLEEIGLEQVGTHGTTA CLAMLNDAVKKGGIMACSHVGGLSGAFIPVSEDAGMISAVNNHCLNIEKLEAMTAVCSVG LDMIAIPGNTPASTISAMIADEAAIGMINAKTTAVRVIPVPGKKVGDFVEFGGLLGHAPI MQVNEASSQDMIARGGTIPAPIHSFKN >gi|308165861|gb|AEHO01000008.1| GENE 11 18095 - 19132 741 345 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804773|ref|ZP_07698837.1| ## NR: gi|309804773|ref|ZP_07698837.1| hypothetical protein HMPREF9213_0011 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0011 [Lactobacillus iners LactinV 09V1-c] # 1 345 1 345 345 669 100.0 0 MKKGIISLLAVASSALILNVTCANAKNIESTKSNMVISLNGTGRTVDSDKQVAVYDQPNG NVVRYLKPGTNWKIFKKYYDVDNNWYNLGSNQWVREKDLTIKLASYVIFGIKGIANVING DTKVAVCDKPNGNVIRYLAPGTNWKVFKCCDSVKKYGDVHAPKWYNLGGNQWVNENYVGI TTNIRGVGSVYSPKANPTSVLDKPFGKVIKDIDPNVRSWKIFKIYRCPSGMPGVQLRWYN LGGNQWVDGSYMVANITSMEEGIYDLCDYREYEDCPIIKVRCNSNAGIRVWAAPGIKPTG KCLPNGSSWKVLKIYYHNSDVWYNLGGNQWVSKKGTVYLENKFYK >gi|308165861|gb|AEHO01000008.1| GENE 12 19143 - 20354 1025 403 aa, chain - ## HITS:1 COG:lin1179 KEGG:ns NR:ns ## COG: lin1179 COG1705 # Protein_GI_number: 16800248 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 109 268 28 193 328 105 40.0 2e-22 MLGKRLIITVRLLGMKYTKISIFSMLCAGTLLSLADTAIGNKDISKVSAATEIANAFSGN KLLKENNNYIVEKYSAMGPNYYEPSVINYFNNLVNDDFLQNPFINFVATRYQEKFLAAIK PKLLQLKSKGILPSIMAAQAALESNYGTSRLAREANNLFSIKGSYNGQTYYIPTREYSPS KGYYVINGQFRKYSSWDESIQDYVDLMTANPRYHNLLFKENYKDVAHLLKQDGYATDPNY AKALIDLINMYKLYLWDNTATTVEDESIAQIKYIPNYGVLGFYIDGTSIPDSNYKFKDGT RWKTFGSVIINGEEMYNVGGGEYIPKKYTNHNDNGIITIHYQVNYGVNALRSDGTQIPGS NLTFKTGTRWKIVGVKIINGEMCYLVGNDMYIPKRYTQWGEGK >gi|308165861|gb|AEHO01000008.1| GENE 13 20514 - 20699 160 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501621|ref|ZP_05744523.1| ## NR: gi|259501621|ref|ZP_05744523.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_04112 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 61 1 61 61 76 95.0 7e-13 MSKVIVKSALIVVIVLVAYFISFNSGFRFLDQYPYIKAILIFLAFVLTLHNVIRDVRNNK K >gi|308165861|gb|AEHO01000008.1| GENE 14 20877 - 21344 595 155 aa, chain - ## HITS:1 COG:SP1572 KEGG:ns NR:ns ## COG: SP1572 COG0783 # Protein_GI_number: 15901415 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pneumoniae TIGR4 # 5 151 31 176 178 132 46.0 2e-31 MKYPKTKEILNEAVADLIKLHLVVHQHHWYMRGERFLKLHPYLDEVMDELSEQLDLAAER IVILDGNPCSSLKEVLEKSKIKESEGDYNLTINERFSIIVDDLRQLRDLYQKGIRISAEE GDDSTNDMLILFNTSVEKRIWMMSAELDQAPKNDD >gi|308165861|gb|AEHO01000008.1| GENE 15 21422 - 22825 1413 467 aa, chain - ## HITS:1 COG:SP0871 KEGG:ns NR:ns ## COG: SP0871 COG0719 # Protein_GI_number: 15900754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 13 467 16 470 470 691 71.0 0 MATAEDLVNDDAYQFGFHDNIKPKFSTGRGLTEEIVRKISAEKNEPKWMLDYRLQAYQIY QKMPFPSIGPDLSGLDLENMLYYQKVTDKKYRDWNDVPEDIKLTFEKLGVPQAERKYLAG SAAQYESEMVYHNMKKQFDKLGIIFMDTDSALKEYPDIFKKYFGKIAHPTDNKFAALNCA VWSGGSFIYVPKGVKVNTPIQAYFRLNAENSGQFERTLIIVDQDAHLDYVEGCTAPQYSS DSLHAAVVEVNVLEGAYCRYTTIQNWSDNVYSLETKKAQAQKNATMEWVDGNLGAKVTMK YPSVYLNGEGAKGTMLSIAVAHHGVHQDSGARMLHNAPNTSSSIVSKSIARGGGSTDYRG TVDFSKNSSGSKSHVECDTIIMDDMSSSDTIPTNAIENSNVAMEHEATVSKISEEQLYYL MSRGISERKATEMIIMGFVEPFTQQLPMEYAVELNRLISFQMEGAIG >gi|308165861|gb|AEHO01000008.1| GENE 16 22827 - 23276 517 149 aa, chain - ## HITS:1 COG:BH3468 KEGG:ns NR:ns ## COG: BH3468 COG0822 # Protein_GI_number: 15616030 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Bacillus halodurans # 1 142 1 141 146 131 44.0 4e-31 MGIERLNQLYREVILDYGQHPRNKRKIEHPTLTTDVYNPNCGDKLKLFVCLENDKIVDAS FTGEGCTLSQASADMMTKVIKGKSVEQAISLSRTISAIALGKKQSESQMKALGDAKVLES VMQFPARIKCVTIAWWGLDRILLGLRKEA >gi|308165861|gb|AEHO01000008.1| GENE 17 23279 - 24502 993 407 aa, chain - ## HITS:1 COG:BS_yurW KEGG:ns NR:ns ## COG: BS_yurW COG0520 # Protein_GI_number: 16080321 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Bacillus subtilis # 4 403 1 397 406 454 54.0 1e-127 MDKIDIEKIRNDFPILKKKINDEKLIYLDNAATVQMPKEVLTACDTFYHDAYSNVHRSSH TLAIKATQIYETVRKKVQKFINAADTSEIIFTSGCTASLNLVALSWGESFISAGDEIVIT AMEHHSNLIPWQQLALRKKAKLKFIELTPDGRLDMNDAAQKITSKTKLVAAVHVSNVLGV INPIKKLASLAHKVGAIMVVDGAQAAGHIPIDVQQLEADFYAFSGHKMLSPTGVGVLYGR KYLLEKMTPVMYGGEMIEHVSRFTSSWAEIPFKFEAGTPNIAGVRGLGAAIDYLNKISFK MITEYEQELTDYALNALKKITALTIYGPLTSKERLPIFSFNLDKIHAHDLATILDAEGVE VRAGHHCAEPLMTDLGVIATVRASLYIYNTEKDIDILVEAIEKQGIF >gi|308165861|gb|AEHO01000008.1| GENE 18 24468 - 25766 1263 432 aa, chain - ## HITS:1 COG:SPy0287 KEGG:ns NR:ns ## COG: SPy0287 COG0719 # Protein_GI_number: 15674461 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 16 422 13 419 420 349 43.0 6e-96 MDDQQASRLRQVAYNHQEPAWFIEKRLAAQKLLLNNIDLPQMQRFKFDNWPFFSKHDIDL QIAESIEKNAVTTNEFNVLQIGQTTCSLNLPPKYQKQGVIFTDIFTALKEYPEMIKKYFM TEVIKVDEDRITAYHQAFVNAGLFLYVPKNVEINIPIKADLVQDSRSETSFNPHLLIVAG KNSKLKFVQHLKTIGSCHNTMNMAVEIWAEDGSHVEFSSLEEIGKNTTLYFNKRANIMRD AYVEWAVGLMNDCNTVGNIDSELIGDGSYAYSKAIAVTTDKQHVGINNRVINRGPHSTGL INQRGVLLDNSRLIFNGIGQIKHGAHGSKADQQNRVLMMSDNAHGDANPLLLIDENDVIA AHAASVGPVDPIQMNYLMSRGIPFDQAERLVIRGFLGAVLDAIPAVDVRHEMINILERKL INGQNRYRKDQK >gi|308165861|gb|AEHO01000008.1| GENE 19 25779 - 26570 904 263 aa, chain - ## HITS:1 COG:L34806 KEGG:ns NR:ns ## COG: L34806 COG0396 # Protein_GI_number: 15673775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Lactococcus lactis # 1 258 1 253 256 363 69.0 1e-100 MATLEIKDLHVEVQDKEKNFKKILKGVNMVMHTGEIHAIMGPNGTGKSTLSETIMGNPKY HITQGDILLNGESILNMTVDERARKGLFLAMQYPAEVPGVTNSEFLRAAINARRPENDPI PISDFLSELDKNLALLDMKENMIDRYLNEGFSGGEKKRNEILQLLMIKPSFAILDEIDSG LDIDALRVVSRGVNAMRGNQFGALMITHYQRLLDYIVPDIIHVMMDGRVVKDGGPEMAKK LEKEGYAGLRDELGLDIKLVDED >gi|308165861|gb|AEHO01000008.1| GENE 20 26558 - 27253 647 231 aa, chain - ## HITS:1 COG:CAC3094 KEGG:ns NR:ns ## COG: CAC3094 COG1392 # Protein_GI_number: 15896345 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Clostridium acetobutylicum # 5 205 7 208 210 111 30.0 1e-24 MARVKDSYYFETFVECADYSLQAAKLLKEIMTDYDSTMIGENTKKIHFIEHQGDQVKHNL TKVLARAFITPFDREDIAELSQKIDTMTDSIESVGMRLYTNNIKKIRPDALPVISLLINA VEDVKTLLKEMSNFKRNTAFKDLIIRVNSVEEEADKLFIENMHRLSVEESDPMNVLMWRD IYNALERSVDACEYVADTVEMVVLKTHNSINGHLRMAIFYRNGEIVIKWQH >gi|308165861|gb|AEHO01000008.1| GENE 21 27263 - 28315 1149 350 aa, chain - ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 30 350 20 335 335 185 35.0 1e-46 MTISFSNFLGQVITNPGLAITVFLTLGVIFVNGWTDAPNAIATTVTTRTMRPKTAIVMSA IFNFFGVLIMTQINSSVASTISNMVDFGSDSRHAMIALSAALFSIVVYSVGASYFGIPTS ESHSLIAGLTGAAIAMQNGLKGVNGTEWIKVIYGLFLSLFLGFVLGWLVCKLVILICRNF ERKRTNKYISYAQILGSAAMSFMHGAQDGQKFIGVLLLGIAFANGHSDLVNTFIPIWLMM ICSTVMGVGTSVGGEKIIKAVGMDMVKLEKYQGFASDLAGALCILISTLTGVPISTTHTK TSAIMGVGAVRRLSSINLSVVKDMMLTWVFTFPGCGIISYIMAKIFMAFF >gi|308165861|gb|AEHO01000008.1| GENE 22 28436 - 29176 281 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 230 1 226 311 112 30 4e-24 MTDLIKINDLKKHYGKQSILKGISATVEQGKVISIIGPSGAGKSTFLRCLNGLEKPDDGS ICFEEKNITSINERELDKLRQKMGMVFQNFNLFSNMNVLENIKLAPMKVNKISNEAANQK ALSLLERVGLEDCANKMPSALSGGQKQRVAIARALAMDPDVMLFDEPTSALDPEMVGEVL NVMKELADSGMTMLIVTHEMGFAQHVSDEIWFMADGFLQEKATPEEFFAQPKTKRAQEFL SKVLSV >gi|308165861|gb|AEHO01000008.1| GENE 23 29169 - 30647 1370 492 aa, chain - ## HITS:1 COG:lin2352_2 KEGG:ns NR:ns ## COG: lin2352_2 COG0765 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 284 492 7 215 215 219 50.0 8e-57 MKKCNLFKIIANLACLMTFLCLFSANAVAADHSSKSILTCIKNKKELVVGTSADYPPLEF IDNQNGTNKYVGVDIELAKEIAKDLGVKLVVKNMSFDSLLVALETRKVDMVISGLTPTPE RKKSVDFSKIYYRPSGEYFLINKNDRAKYHSLISFKGQKIGAQNGSLQYQLVKKQMPKSH VKGLGKINTLVLALQSGKVSAVVMEELIAKAYAHNNPSLYCFKSDLKEPQAGNAIAVAKN QPDLLKEVNKTVDKVIAKKLVLTKFLPQAAKSMKKSTAKKDPFKYAPYFIKGIELTLVIT IFSVLIGVILGTILALMRLSSHLALKIPAICYIELIRGTPQMVQILFVYFGIGAIIQNMS ALLAGIIAIGLNSGAYVAEDIRSGINSLPVGQAEAARSLGLSKAATYRYVVIPQAIKNIW PALGNEFITLLKDSSLVSIIGVAETMYQTQLVQTSTYQGVFPLVVAMAIYFIMTFTLTRI LSYMERRMNYHD >gi|308165861|gb|AEHO01000008.1| GENE 24 30883 - 31446 497 187 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 2 186 24 205 211 209 58.0 3e-54 MEIYNRFKRKHNDRILKITQDSYYKCNDNLSMTERSKINYDHPDAFDMKLLAHQLNSLIN HHAIEMPIYDFTQHTRSKETTHVEPADIILLEGILTLFDKQLRNLMDIKIYVDTDDDIRF IRRLKRDTQERGRSVDSVISQYLATVKPMYHQFIEPTKRYADIIIPEGGENNVAIDMLTT KINAVLS >gi|308165861|gb|AEHO01000008.1| GENE 25 31466 - 32032 574 188 aa, chain - ## HITS:1 COG:SPy0265 KEGG:ns NR:ns ## COG: SPy0265 COG1564 # Protein_GI_number: 15674445 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Streptococcus pyogenes M1 GAS # 2 176 36 208 210 99 38.0 3e-21 MGIVPEVAIGDFDSLKKGELAQLEEYEIDFRYSHPEKDYTDSEQLFKVAFEEYNVDQLDI YGATGGRLDHFLLNIFTFSKSELKKYCEKIRYIDCQNIIMYILPGVKKFTAVAGYNYFAV GNLTAVDDLNISGAKYELKNYYSSNPFVFSSNEFVGLQPIVVSLQSGEGIIIYSKDINRF YTAKKPRN >gi|308165861|gb|AEHO01000008.1| GENE 26 32163 - 32813 574 216 aa, chain - ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 2 215 4 216 218 171 40.0 8e-43 MIAPSILNADNLSLKEQILEVKLAGIKRLHIDIMDGHFVPNLSYGPELIKCISRDFPDME IEIHLMSNNLPVMLPLFANLSCAILEFHLEATDQIDKWIEYVRNKGIKVALAINPDTPVE KLVPFLDKIDQVLLMSVQPGFGGQKFRNEVIDKIVFLKKMMANQGYVIPLEIDGGINDVT ANKVKTAGADIVVAGSYIFKHGMIKDQIDKLKCVMK >gi|308165861|gb|AEHO01000008.1| GENE 27 32822 - 33715 642 297 aa, chain - ## HITS:1 COG:BH2503 KEGG:ns NR:ns ## COG: BH2503 COG1162 # Protein_GI_number: 15615066 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Bacillus halodurans # 7 287 4 286 294 232 42.0 8e-61 MLEKIAGIVVSVISGYYDIKTDKGIIRSRARGIFRNLKQKPLVGDRVVVQPDDKGINYLV AVADRTCELQRPALANAEYVLLVMSATQPDFSVDLLDRYLVFFAWKKVKVVIFLSKTDLI SSDELLKIKSKLNEYQKIGYQYFVDYQDLEQYLQNNIDSDEIWVLAGQSGVGKSTLLNRL KKDISQKTAEISFALNRGKHTTRQISLFEYGKGYIADTPGFSSIDLSNIKLDELKDLFYE IKHFSKECKFRQCQHINEPKCAVKVALNNHDILDSRYNSYIKIREEIALGRIPEYRK >gi|308165861|gb|AEHO01000008.1| GENE 28 33715 - 34446 541 243 aa, chain - ## HITS:1 COG:lin1934_2 KEGG:ns NR:ns ## COG: lin1934_2 COG2815 # Protein_GI_number: 16801000 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 236 67 306 315 94 29.0 1e-19 MIDVTPKSGTSIKKYQKVNLIISKGDGLTAVPNVIYEYFEDAQEELQDLGFKVIKKEIHS STVEKGVVVEQNLFPGKKVVADKTKIVLTVSKGGKTHKKIKLRDLTGYSLKSLKDYIKDK GLILKVIEEDSSAPQGTVIRQDPEAGTKLSRGDCVTVVVSRDNGNILIKKYDIRYDSSSD RGNGNHIQVFISDDSHKFSNTYVDTYITTDKTISVPLDFSSSDEARVRIVQDGKIIVDED IRK >gi|308165861|gb|AEHO01000008.1| GENE 29 34443 - 35567 1267 374 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 1 291 22 307 342 322 55.0 6e-88 MANVYLAEDIILCKKVAVKLLRLDLQKDPQTIHRFKLEAQSTSELSHPNIVSILDVGSDD QRHYLVMEYVEGIDLEEYIQRNKPLSLNEAIRIMDQVLSAIICAHQHGVIHRDLKPQNIL MDKMGNIKIVDFGIAVALNKSTMTQTNTAIGSVHYMSPEQARGSITTKQSDIYSLGIILY ELIMGQVPFGGENAVAVALKHFQEPTPSMRQQNIEIPQPLENVVMRATAKDARDRYKSVV EMKKDLDTSLEPSRRFEPPFVAEHNPNKDATIVLPVVDGSVKNTAEIKQNLKDSNKNSAW LSNFKKHKWWWITTAFAFMMIILIFVFALGSKDYVKVPELNNLDEMQAKRVLISRGLRVG KIYHKFSSKIKIIM >gi|308165861|gb|AEHO01000008.1| GENE 30 35636 - 36385 626 249 aa, chain - ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 8 241 7 238 246 188 43.0 1e-47 MVEATYFTSVGKVRKTNQDFVKTFKNRNGIIMGVVCDGIGGHQGGDVASNMAVNHLGHNF MMTDFCEAQVAQSWLSVQLKAENDNILRTATKFADLNGMGTTIVLAIIFADQVLIAHLGD SRAYLYRDRQLTQLTEDHSLVNELLKMGQITEEEAKNHPQKNIITQTLGVSSTVDPEFSI LEVHTSDIFLLCTDGLTNSLTDEQIQTILVPDGHSLKDKCKKLIDEANRLGGGDNITVCL LDCSEKEGQ >gi|308165861|gb|AEHO01000008.1| GENE 31 36391 - 36798 301 135 aa, chain - ## HITS:1 COG:lin1936 KEGG:ns NR:ns ## COG: lin1936 COG0144 # Protein_GI_number: 16801002 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Listeria innocua # 4 133 308 441 446 136 48.0 1e-32 MKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHLSEIQYNILD HVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHPDFSLAPFEVGNLSKCKMIKIFPDD YNSDGFFIAKFVKRG >gi|308165861|gb|AEHO01000008.1| GENE 32 36849 - 37703 655 284 aa, chain - ## HITS:1 COG:SP1734 KEGG:ns NR:ns ## COG: SP1734 COG0144 # Protein_GI_number: 15901566 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 5 281 7 278 437 200 44.0 2e-51 MKINARSVALDTLLKIFKQKSYSNIALNNALEKSQLSPIDKALTTQIVYGTVQYKLYLEY QLKSLVKTKLKEDYLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGSQSYRLVN GILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKAKTISILQAGNMPSVNS IRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLV VDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKN >gi|308165861|gb|AEHO01000008.1| GENE 33 37693 - 38637 1005 314 aa, chain - ## HITS:1 COG:L0362 KEGG:ns NR:ns ## COG: L0362 COG0223 # Protein_GI_number: 15673875 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Lactococcus lactis # 2 310 4 316 319 279 47.0 6e-75 MTSVIFLGTPKFGAVVLQGLIDQGYKIEAVVTQPDKKFGRKQELHQSEVKKVALANNLKI YQPLHLSKSEEMNELLSIRPDFIVTAAYGQFLPTKFLQTAKIKAINVHGSLLPKYRGGAP IQYSLINGDKQTGVTIIEMVKKMDAGEMYGSRVIDISDDDTSGSLFEKLSIIGRDLLLEV IPKIIANQIVPTCQDEDKVVFSPNISKDQEQIKTSMTATQAHNLVRALNPQPGAYILMHN KRYKIWQSEVSAEKCSLESGYLVSKNKEFAISFSNGTILKILNIQPTGKKPIAIKDFING QGNQFKVGEKIVED >gi|308165861|gb|AEHO01000008.1| GENE 34 38660 - 40705 1574 681 aa, chain - ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 10 681 128 797 797 637 47.0 0 MTDSARALPIFNGKAIDAATVRSNTDILLINKLLATKAAKIDYVVKNKASHKKDLIYSIS NPKKDYLEILANLRTNAFKQKILLNDIIENYESYPKRQQELANLGIKSDVLRNAVNNNWL QKQEVDVYRDPTAADMIHASKVVQLNVEQQAALDQINAQIVRKNAKTFLLEGITGSGKTE VYLHAIAECLKNNKSALMLVPEIALTPQMVNQVKSRFGKDVAVLHSALSEGEKYDEWCRI RNQETHVVVGARSAIFAPLTNIGLIIIDEEHEASYKQDNTPRYHARDVAILRSEYNHCPL VLGSATPSLYSRARAQKGVYHLLRLNNRANNKELPKVQIIDLKKAMFAGTQFDISVDMLN VIKKTIAKKEQVILLLNRRGFSNFMLCRECGYVLQCPNCDISLNYHKDINQMKCHYCGYE INKPYVCPKCHSKHIIFLGSGTQKIQEELINMIPNVRILRMDIDTTRKKGSYQKILSAFG QGQADILLGTQMIAKGLDFPNVTLVCVVNADIGLAVSNYNASEKTFDLLTQVAGRAGRAD KEGLVLIQTYNPDHYAIKLASVQDYEQFYQSEMRYRYIGNYPPFYFTTLVSIVSHNEPLA AKQAFLIKRLLTKKLSQATIVLGPTPSAIGKINNQYFYQILVKYKKEPYLAETLSYIQNY AQDIAKNDINVYIDQEPENIM >gi|308165861|gb|AEHO01000008.1| GENE 35 40702 - 41049 360 115 aa, chain - ## HITS:1 COG:BS_priA KEGG:ns NR:ns ## COG: BS_priA COG1198 # Protein_GI_number: 16078634 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Bacillus subtilis # 2 113 3 116 805 97 48.0 8e-21 MFAEVIVDVAAKQTDKTFEYKIPSELKNVAVGSRVVVPFGRRKVQGFVVDIHAEANYQGE LKELSLVLDDQIPLIPELVKLSEVLARKLFTYRISILQAMLPSMLKAGYKKILYL >gi|308165861|gb|AEHO01000008.1| GENE 36 41107 - 41325 288 72 aa, chain - ## HITS:1 COG:SP1737 KEGG:ns NR:ns ## COG: SP1737 COG1758 # Protein_GI_number: 15901569 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pneumoniae TIGR4 # 6 70 4 67 103 60 56.0 9e-10 MKITYPSIDKLLDKVNSRYSLSVLAAKRSHELQSGEPGALLSYKSSKALGQALEEIAAGK VTIDPEHQTKID >gi|308165861|gb|AEHO01000008.1| GENE 37 41327 - 41953 685 208 aa, chain - ## HITS:1 COG:SPy1632 KEGG:ns NR:ns ## COG: SPy1632 COG0194 # Protein_GI_number: 15675507 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pyogenes M1 GAS # 5 206 1 202 211 234 58.0 9e-62 MGVNMSNKGLLIVLSGPSGVGKGTVKTEMVRQQAFPFEYSVSMTTRKPRQGEVDGKDYFF VDEERFKNAVANKELLEYNQYVGNYYGTPLAPVKEMLNMGKDVLLEIDVNGAKQVRSLMP DGVFIFLTPPDLHELKHRIVNRGTDSDKAIDLRMQQARQEILMMQDYDYAVVNDTVANAV DHIKAIVESEHVRIARVIDDYRNMVKED >gi|308165861|gb|AEHO01000008.1| GENE 38 42082 - 42372 181 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501643|ref|ZP_05744545.1| ## NR: gi|259501643|ref|ZP_05744545.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] Cell division membrane protein [Lactobacillus iners AB-1] YGGT family protein [Lactobacillus iners SPIN 2503V10-D] YGGT family protein [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] YGGT family protein [Lactobacillus iners SPIN 2503V10-D] YGGT family protein [Lactobacillus iners SPIN 1401G] # 1 96 1 96 96 108 100.0 9e-23 MLRYLFFYFLLIVHYIAYIYGLLIVVDALFSWVDFLYRSVVGKLINRIVNPYIALFRIKP IMKISYSFGIDLSPLIGILLLWIIQNITFRLMVQIL >gi|308165861|gb|AEHO01000008.1| GENE 39 42375 - 42797 642 140 aa, chain - ## HITS:1 COG:BS_ylmF KEGG:ns NR:ns ## COG: BS_ylmF COG1799 # Protein_GI_number: 16078603 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 24 139 32 146 149 93 43.0 9e-20 MAFEKLTKMLGISDEDEYEDDSFEESEVSYQEDKRNDKKSNIVSINSVNAGKSRIVLFEP RVYSDAKEVSQNLLNNRAVIINFSRMDEGQSKRIVDFVMGTVYALNGDIQRVGEKIFLAT PPKFVTDGKIADATSEKDNL >gi|308165861|gb|AEHO01000008.1| GENE 40 42820 - 44082 1413 420 aa, chain - ## HITS:1 COG:BH2558 KEGG:ns NR:ns ## COG: BH2558 COG0206 # Protein_GI_number: 15615121 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Bacillus halodurans # 1 334 2 333 382 359 65.0 6e-99 MDFNFDSDNKSAVIKVIGVGGAGGNAVNRMIDEGVQGVSFIAANTDVQALNSNKAENKIQ LGPKLTRGLGAGSHPEVGQKAAEESQQTIEEALKGADMIFITAGMGGGTGTGAAPVIAKI ARETGALTVGVVTRPFTFEGPKRSKDAAEGISQLKQYVDTLVIIANNRLLEMVDKKTPMM DAFKEADNVLRQGVQGISDLITSTDYVNLDFADVKTVMENQGSALMGIGRASGENRTVEA TKMAISSPLLEVSIDGAKQVLLNITGGPDLTLFEAQDASDIVSKTAGDDVNIIFGTSINA NMGDEVVVTVIATGIDNKQDNHQNVAKAKLNKESVESSTANKAVTPADAQKDVNSAKPDM LFDPTSIWKQEKTSSNRVQEKVKGDSWTPFSKSEQQDVLDVETNLDDENDIPFFKHRQNN >gi|308165861|gb|AEHO01000008.1| GENE 41 44082 - 45467 1414 461 aa, chain - ## HITS:1 COG:SP1667 KEGG:ns NR:ns ## COG: SP1667 COG0849 # Protein_GI_number: 15901502 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Streptococcus pneumoniae TIGR4 # 1 387 1 386 457 275 38.0 2e-73 METKDLLVGLDIGTTSVKAVLASSETGKLRVIGTCCEATKGMRHGKIVDIEQTANSIKKV LNGLSQKTNTTCDYLITAVPANMLQLESAHGLINVGEQGKEVDENDVRRVVSVAIKSSIK DTRQALTFLPSKFLIDGRTDVDDPRKMIAHSLEVHGVLVTAPISDLHNISRAIERAGYNN KFFVPTPLGIANVALDEGERTFGSIILDMGGGITTATVIHENKIKYATIDLEGGSDVTKD ISVVLNTSLDEAEKIKRDFGYADPELTSKEDKFPVNVVGANAPKMIDEEYLSEIISARLH QILDRVGKGLKEHAAFNLPGGIVITGGNSEIQGTDDLVKNSYNIKVKMYQSGQPGLKNAI YAVALGVITYAYNLSDINYLANSVIYGSQHTDDVKDIISKSKSVFFKKQRSEDENNRELE YNDNIQQGSHEDDANNGKVKKERKSFIDFIKNFLTDEDGLG >gi|308165861|gb|AEHO01000008.1| GENE 42 45532 - 46368 857 278 aa, chain - ## HITS:1 COG:lin2140 KEGG:ns NR:ns ## COG: lin2140 COG1589 # Protein_GI_number: 16801206 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Listeria innocua # 32 262 14 244 270 62 25.0 1e-09 MSNSKLTKKDPKEQIAKWTEYKKTKIKENIDLPRLGALRRHALWTKLGSIIILSVVGIII CLYFISFKSSVRSVKLVGADEIDGAKVAKIIDVSPKTKVVFSLFKGKEYSKKISRVFPEV DTVKITVTNWNNLILHIKEKRVIGYVKENNHYRKILFNGKVSRQDISEKLVDISKPLFLG YSRQKSIINDLKVYKALPPYFRDKIKMISGKIRRPNQIILLLNDHNIIIGDVNTFAEKIK YYDSIKKQLTQPSIIDMEVGVFSRPLTVKDKEQYEINF >gi|308165861|gb|AEHO01000008.1| GENE 43 46397 - 47509 961 370 aa, chain - ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 359 1 354 363 338 48.0 9e-93 MRIIFSGGGTGGHIYPILALIERLKERKLTTDDDILFIGTNKGLESKIVPAAKIPFKTLA VQGFNRKHLLRNFKTIKLFLNATKDARKILEEFKPDVVVGTGGYVCGAIVYAAAKMKIPT LIHESNSVVGLANKFLAHYVDKVCYTFDDVVRQFPEKKKLVKTGNPRSQQVLSLNETKID LKKKWNLNPDVFTVLIFGGSRGALAINNIMERSIDELGDKPYQIIWATGQVYYGQIKERL AKHKIAKNIVIVPYIDNMPGLLPQMTCVVSRSGATSLAEFTALGVPAVLIPSPNVTHNHQ EKNAMDLEKAGAALVINENDLNPNNFVSSIDHILLDPNCAQKMSAESKKLCCCDASDKLI YEMQNLINKK >gi|308165861|gb|AEHO01000008.1| GENE 44 47512 - 48894 1408 460 aa, chain - ## HITS:1 COG:BH2567 KEGG:ns NR:ns ## COG: BH2567 COG0771 # Protein_GI_number: 15615130 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus halodurans # 1 458 1 449 450 375 45.0 1e-104 MKIIDKYQDKNILILGLGKSGYSVAKLLLKLGAKLTLNDKKKLDDNAQAIELASLGVKII SGYHPTDIFAKEHFDYLVKNPGIPYENPLVQAAKAANVSIITEPEVALAVSSAPYVCVTG SNGKTTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMG VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQKNILEQEL SLNKAHVVTFSEESTQADYYIGEQYLESQADHEIMKISDIKIPGRHNQQNSLVAIAISKI MGASDEDIRSVLSTFTGAKHRLQYVMTYNNRRIYNDSKSTNIEAASVAIPSFSQPEVLIA GGLDRGFTFDELVPLLKKHVKAIVLYGETKYLLADAARKAGIRDIVIVNTLQEAVPRAYD LTNDGDVLLFSPACASWDQFNTFEDRGDFFVKFVKELKTK >gi|308165861|gb|AEHO01000008.1| GENE 45 48908 - 49867 915 319 aa, chain - ## HITS:1 COG:lin2143 KEGG:ns NR:ns ## COG: lin2143 COG0472 # Protein_GI_number: 16801209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 10 313 12 317 324 267 48.0 2e-71 MQYGLYPGVISLVITALVLPFFICFMKMKKEGQQIREEGPKWHAKKAGTPTMGGIVFLLS SIIATVAILLSNGKLNKIAIILIIAYLGYGVIGFLDDGLKLLFHRNLGLRAWQKLLGQII IALVILLIAYSDNFTFKIYIPLFGTVNSYLLFVFFIIIWLVGYSNAVNLSDGLDGLATGL SIISYGTYAYLAYLAHNATVLAFCCSVIGGLVAFLIFNHKPAKIFMGDVGSLALGGGLAA VSIFLNRPWSLLIIGIVYVLETLSVILQVISFQTTGKRIFKMTPIHHHFEMLGWSEWKVD IVFWLVGLLGSIIYLLLAL >gi|308165861|gb|AEHO01000008.1| GENE 46 49876 - 51546 1869 556 aa, chain - ## HITS:1 COG:lin2145 KEGG:ns NR:ns ## COG: lin2145 COG0768 # Protein_GI_number: 16801211 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 4 555 154 713 752 367 37.0 1e-101 MAMHLPGIHFDETPSRLYPNGRFASHIIGIAQPFNDKKNHSINLIGTMGIEKYFNKVLSG KDGRRIALVDAGEYQLPGGQHSYKAPINGNNIYLTIDSQLQIYLENLLDAVQNKYKPKAL TAIVEDVKTGKIMAASQRPTFDPATRKGLNDNWRNILVQDSYEPGSVFKILSITAAIQEG KYNPKEYYRSGSITFNGSTIHDWNYTGWGAIPFEQAFPRSSNVGMSILVNRLGRHTWRRY LDNYHIGKKTNITLPDENSGLINIHSQIDQAVTSFGQGINVNAMQMMQVYSALANSGQML KPQLVEKIVSSSGKVIKRYKKIKVGKPVYSQETAQTTLKLMRDVVEKEYGTGMTYKIPGK SIAVKTGTAQIAGIHGGYLKGDRNYLFSVVGLTPADNPRYCIYITMKQPQIMSDPPETIM SLIFKPLINRVSVSSKVDMMDEQITIPSVKGQSREQAVRLLEKMGLYVETIGSGHKVEAQ SILANTKVNPNSKIIIFTGGIIRCPNMKGWTIKQVTQFANISKVKVEVLGKGKVYKQSRI PRSILNRNSKVKVELR >gi|308165861|gb|AEHO01000008.1| GENE 47 51632 - 52027 402 131 aa, chain - ## HITS:1 COG:BS_pbpB KEGG:ns NR:ns ## COG: BS_pbpB COG0768 # Protein_GI_number: 16078580 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Bacillus subtilis # 24 128 17 121 716 73 37.0 1e-13 MMNNKKIVRKVSKSHVNRNVVGRLLQISMAFVFLLFVGRFLYLSISKTIAGENISERVSN LYKRDEILKSVRGAIYDNSGNVIAEDSHSFTLYAILDKSSLDYKGKPMYVVDKKKTAEKL STVIPLSEKKF >gi|308165861|gb|AEHO01000008.1| GENE 48 52024 - 52389 403 121 aa, chain - ## HITS:1 COG:no KEGG:LBA0804 NR:ns ## KEGG: LBA0804 # Name: ftsL # Def: cell division protein # Organism: L.acidophilus # Pathway: not_defined # 1 121 1 120 120 92 47.0 4e-18 MVDSSARNFRYSELDADNQHNKQVIVRLTSQNEPLSLTEVLFIAFGVVMTLIMMCFMISS NISATNAQRNLSEIQKDIATVQNKNTNLRQEIGELTSANRMNKLAKQYGLQLIESNIRNI R >gi|308165861|gb|AEHO01000008.1| GENE 49 52417 - 52551 66 44 aa, chain - ## HITS:1 COG:SP0334 KEGG:ns NR:ns ## COG: SP0334 COG0275 # Protein_GI_number: 15900265 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 1 44 271 314 316 57 61.0 6e-09 MPQIPDSLKPTLKIISRKPIVATNKELEENNRSHSAKLRVAEKL >gi|308165861|gb|AEHO01000008.1| GENE 50 52527 - 53363 912 278 aa, chain - ## HITS:1 COG:SA1022 KEGG:ns NR:ns ## COG: SA1022 COG0275 # Protein_GI_number: 15926762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Staphylococcus aureus N315 # 3 270 2 256 311 290 58.0 2e-78 MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL AKKSFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG GRICVITFQSLEDKIVKKYSKNIQMSIFQEGCRKYQIH >gi|308165861|gb|AEHO01000008.1| GENE 51 53366 - 53797 493 143 aa, chain - ## HITS:1 COG:BH2576 KEGG:ns NR:ns ## COG: BH2576 COG2001 # Protein_GI_number: 15615139 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 143 1 143 143 179 54.0 1e-45 MFMGEYHHNLDSKGRLIIPAKFRDQIGDEIIFTRGMEGCIFGYPQAEWQKIEAKLAKLPL TQRSARKFTRLFYSGAMETEFDKQGRVNLTATLKEHADLIKECVIVGVSNRIEIWSEDRW QKFADEADDNYDDIAEDLDDIEL >gi|308165861|gb|AEHO01000008.1| GENE 52 53777 - 53965 172 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIFTHEHGHSPLSTYNLPQFTTSNHNLPQKGKKYLKSYITTPKKILKLGSFIIDIYQVSN NL >gi|308165861|gb|AEHO01000008.1| GENE 53 53960 - 54295 270 111 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_04000 NR:ns ## KEGG: LAC30SC_04000 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 5 109 4 108 109 75 46.0 6e-13 MFVLIFLLPFIGLLCGILVKNMLPHKKISYVELMPPFLIAACQLITSFHKLPSFLPYAFL FYLILVITVAINFVKKNKNIALGRILFSLWRYLILCSFIWYICLLLITIFL >gi|308165861|gb|AEHO01000008.1| GENE 54 54587 - 55114 301 175 aa, chain - ## HITS:1 COG:no KEGG:LJ0964 NR:ns ## KEGG: LJ0964 # Name: not_defined # Def: rod shape-determining protein MreD # Organism: L.johnsonii # Pathway: not_defined # 1 175 1 177 177 133 45.0 3e-30 MVQLKRWYIAIALFFTMVLDGVLSQTFTRFLGNINVACWLSIILITLIALSDAHNMANVW LCLVVGLVYDIYYVGVIGIYIVAFPLLCYCVQKIAKYIPELFITRLLVCLLGYIGVYLYL LLVLNIIGIIDISLFAIMRQLVESLVMCIILYILSYNLLFKLIVKYPFLNKQIFY >gi|308165861|gb|AEHO01000008.1| GENE 55 55114 - 55962 909 282 aa, chain - ## HITS:1 COG:lin1582 KEGG:ns NR:ns ## COG: lin1582 COG1792 # Protein_GI_number: 16800650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Listeria innocua # 1 278 1 275 295 157 35.0 2e-38 MKKFFKNKKNVFIFLIVVLILSVLTFSTKMRNSREQPPFLQRISNDAMSIVTKVVTYPFN VICDCSNSVVDLFNTQQENDHLKRKIDELGQVKARNTSLENENLALKRTLKLKDTLSDYD LVICNVISRSPDSWTNLLIIDHGARSGIKKNMAVMSDSGLIGRVVEVNSTSSKVELITST DKAANRFAVAAKSKKHKEIHGIITLINDKLAFTPIESKVKVKPGTQVYTSGMGGKSPKGL LVGTIYKISRDSYGLSNILEIKPAGNLNNPSIVTVVKRKVAD >gi|308165861|gb|AEHO01000008.1| GENE 56 56012 - 57055 1168 347 aa, chain - ## HITS:1 COG:lin1583 KEGG:ns NR:ns ## COG: lin1583 COG1077 # Protein_GI_number: 16800651 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Listeria innocua # 16 346 1 333 337 408 67.0 1e-113 MLNSLNIRRIKERFNVFGLGSKNIGIDLGTANTLVYIEGKGIVLREPSVVAKNTQTGEII SVGSDAKEMIGRTPGSIKAIRPMKDGVIADYDTTAAMLKYFIEKTVGNSKPSAMICVPSG VTEVEKRAVIDAARVAGAREAYVIEEPFAAAIGAGLPVMDPTGSMVVDIGGGTTDVATIS LGGIVSSRSTRMAGDKFNAAIAAYIHQNFNLLIGERTAEAIKIQIGSASVEKAKDIESMS IRGRDLITGLPKSMDIDAVDVAKAIQEVVQSIIAAIKETLEETSPEIAADVIDHGIVLTG GGALLKNLQEVISEATKVPVFIAQDPLDCVAIGTGESLKNIEVMRRH >gi|308165861|gb|AEHO01000008.1| GENE 57 57260 - 57724 491 154 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1245 NR:ns ## KEGG: FI9785_1245 # Name: radC # Def: DNA repair protein RadC # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 8 152 6 150 203 131 44.0 1e-29 MENTNQYLLSNDEEIINTFIKGLQEINITTFEQLRLECKARNITTFTDFFEYTRSHEAPE TLSLGAELLLNRVKAIKREKMESFCSSSQIGYYLSNVLSGCYQEHLMAVYVDVKNKIIAE KVIFKGTLNQAIIHPRDIFRWAIIYNAAGFFLVT >gi|308165861|gb|AEHO01000008.1| GENE 58 57757 - 58434 638 225 aa, chain - ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 7 199 5 192 221 92 29.0 6e-19 MKTNLNKTFKAVIFDLDGLLVDSERLYWRANIQAAQELKTPIPRDAYLEIVGVSPEKVAE FYHDFFADASLKDKFISRTNELFSLWLAEGQLHLKKGVLQFLQKLKKDQKKCIIASSNTK EVIEQILQKFHIENYFDFFICYDDVKQARLQAKPAPDIYLDAVKRLDMQCDELIVFEDTG IGVEAAQKAGLRCVMIPDLKPATIQDKKLAYLICNNFLEFSKNNY >gi|308165861|gb|AEHO01000008.1| GENE 59 58415 - 58789 375 124 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1218 NR:ns ## KEGG: LGAS_1218 # Name: not_defined # Def: folylpolyglutamate synthase # Organism: L.gasseri # Pathway: Folate biosynthesis [PATH:lga00790]; Metabolic pathways [PATH:lga01100] # 1 113 302 413 419 122 55.0 5e-27 MVDGAHNIQAVHELISYVRKISQGRIYILLGMMKDKDIAKVVKLFDPKEKITFTRISYPR AATKSDIEEDLNCHINFIDDYRLAYDILKNKLTQDDILVVTGSFYLAGAILNYIHGDRHE DEFK >gi|308165861|gb|AEHO01000008.1| GENE 60 58792 - 59301 447 169 aa, chain - ## HITS:1 COG:TVN0757 KEGG:ns NR:ns ## COG: TVN0757 COG0285 # Protein_GI_number: 13541588 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Thermoplasma volcanium # 1 168 122 296 428 98 33.0 5e-21 MAFWIFAKQNCDYAVIEVGIGGEHDKTNVIVPQASIITTIGLDHEKVIGPTMFDIAHEKS GVIKKNRPVVLGNVPAKVLPLLMEKARKKNAPVLLLGRDFQVECNDDIVVTINKRLFHFK LRPQAEAYDIALALITFATLKFDISVSDIEDTINNTIIPARYQIVQKSL >gi|308165861|gb|AEHO01000008.1| GENE 61 59325 - 59678 315 117 aa, chain - ## HITS:1 COG:BS_folC KEGG:ns NR:ns ## COG: BS_folC COG0285 # Protein_GI_number: 16079860 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Bacillus subtilis # 19 93 21 95 430 85 46.0 3e-17 MNVRAIIDFIEHLPRIHQKNDLTYIRRILQELNEPQDKVKTFHITGTNGKGSTAYYLSRL LQKTGQSIGLFVSPYVEMFNERIQINGQPISDELLISAYQAVKNAIRNIQKNIQNLT >gi|308165861|gb|AEHO01000008.1| GENE 62 59682 - 62321 2708 879 aa, chain - ## HITS:1 COG:BS_valS KEGG:ns NR:ns ## COG: BS_valS COG0525 # Protein_GI_number: 16079861 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Bacillus subtilis # 4 876 8 879 880 1152 61.0 0 MTELAPKYDPRAVEEGRYQTWLDEDLFKPSGDKKAHPYSIVIPPPNVTGKLHLGHAWDTS IQDTLIRFKRMQGYDTLYLPGMDHAGIATQAKVEEKLRKQGQDRHQLGREKFIKQVWDWK DEYASIIKSQWGKMGLSLDYSRERFTLDDGLSKAVRKVFVKLYEEGLIYRGQYIINWDPK LETALSDIEVIHKDDNGAFYHINYPLADGTGSVEIATTRPETMFGDTAVAVAPGDERYKD LVGKELILPLVGRHIPVIEDQHVDPDFGTGLVKITPAHDPNDFLVGNRHNLQRINVMNDD GTMNEQAGKYAGMDRFDCRKALVEDLKNEGYLLKIEPIVHSVGHSERSGVQIEPRLSTQW FVKMKPLADKVLSNQKEDDKVNFVPERFEGTLEHWMENVHDWVISRQLWWGHRIPAWYNK KTGEMVVQEEAPKDIENWDQDNDVLDTWFSSALWPFSTLGWPDEEAADFKRYFPTNALVT GYDIIFFWVSRMIFQSLHFTKRRPFENVVLHGLIRDEQGRKMSKSLGNGIDPMDVVEKYG ADSLRWFLLNGTAPGQDTRFSYTKMDSAWNFINKIWNASRFVIMNLPEDATAAHMPDVDT FDLSDKWIFDKLNRVVKKVTRLFDEFQFGEAGREMYNFIWNDFCDWYIEISKVALNGTDE ILKKHKQDNLVWILDQILRLIHPIMPFVTEKLWLSMPHNGKSIMVASYPVVHSEFENHVA EQDMEFLIEIIKAVRNIRMEVNAPMSSAIDIMIQLDNSKDKHILLDNRDYVENFLHPKSL VVDTNVVAPKLAKSAVIAGAQIFVPLAELVDLSEEIAKMDKEIDHLQEEVKRCKAKLANK GFVDHAPEAVIEKEKAKQADYESQLAGAVQRLKELKESN >gi|308165861|gb|AEHO01000008.1| GENE 63 62613 - 63812 1097 399 aa, chain - ## HITS:1 COG:L183112 KEGG:ns NR:ns ## COG: L183112 COG0301 # Protein_GI_number: 15672361 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Lactococcus lactis # 1 381 9 389 406 456 58.0 1e-128 MVRYGELSTKGKNRRDFIAKLADNIQKALSTFPAIKIYPKHDRLHIILNGAPFDEIDQKL KKVFGIQTYSPVIKTDRTLSAIEETALDLMKATFKDGMTFKINTRRSDHEFEYDTNQLNA LVGDYLFDHMSDLKVKMKNPDLVLRIEVRKDAIYISNQLLHGAGGMPVGTAGRAVMMLSG GIDSPVASYLAMKRGVKIDMVHFFSPPYTTDKALAKAEELTGILANYCGKINFIAVPFTE IQEQIKEKLPEGYLMTVQRRFMLQLADKIREMRGGLAIFNGESVGQVASQTLESMVAIND VTNTPVLRPVATMDKTEIIALADKIGTFELSIQPFEDCCTIFAPPRPKTKPKLDEARKLQ DRLDSESLIQRALDNIKIIPIYPNQKFINDHFEDSDNLL >gi|308165861|gb|AEHO01000008.1| GENE 64 63841 - 64995 934 384 aa, chain - ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 381 1 380 381 387 51.0 1e-107 MIYFDNSATTQVNPEALDTYIKVTKDIWGNPSSLHKFGDRSHQLLEASRNQIAKLLGVNS TEIYFTASGSESDNWAIKGTALAKKAFGKHIITSSVEHAAVSHSIRMLENEGFDVTVLPV DSNGLVDPKDLANSIRSDTILVSIMGVNNEIGAIQPIVEISKILEKYPNITFHVDNVQAL GKAIWSRVFTSRVDLMSLSAHKFHAPRGVGILYKKHGKMLVPLIDGGGQESGLRSGTENL PAIAATAKAMRLYLANEKDYVARENQIKEKIINYLSHKPGIHIFSPINDNFVSSILCFAL EGIRGETLVHTLEKYDIYISTTSACSSRSSLESSTLQAMRIDNNIAESAVRLSFDDTNTL EEAKQFIEIFDGIYQHFAKINHLN >gi|308165861|gb|AEHO01000008.1| GENE 65 65096 - 66751 1362 551 aa, chain - ## HITS:1 COG:L7722 KEGG:ns NR:ns ## COG: L7722 COG4477 # Protein_GI_number: 15674133 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Lactococcus lactis # 7 550 23 568 576 165 23.0 2e-40 MAVLLGAIIINKYLKNVISSLHDDLAKLDDPLIAEDIDRLDKMDLAGASLERFSKDRKNY NRIFSEDVTKSLELLNNAVAANESYKLYTAYEIVKQVKPKVQEIGTQVLALQKGFMELLK FTRDNKLQLDALKKQYDDKRKYILSTSYDYSLALEALEDELHAIGCQFESVKNLTIQGDH VEAKRVLQKIRSAITKLEDELSLVKKTSSELLDIFPEQLTEISTTYKSMLKNKFSIVEID ICSTVKQLRNSIEESKKLVSQLKLKDADSKNHSIKETIDKCYDILTKEYKAKAFVDQHQA KIVKALTHTITNSVKLIKNLEHIDKSYELTHGELDEVRGLSSRIQHLNSEFDVDCQKVSD GGVVYSSIEQKWHKLIDEIIKTDERENKIFKDVDGLYDGEKIANASIEKFKQNVSLIYRK MERRNLPGKPDSFLQLYTLVVNEIAKTADKLDQVRINLEEISHELIQIQNDIDRLEQDTK EILDSADLVELTMQYSNKYANRNDIIHANKVAYDLYNNKYEYKEALDILAAAIEKVEPGS YKRIESDYYKK >gi|308165861|gb|AEHO01000008.1| GENE 66 67066 - 67692 979 208 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227520659|ref|ZP_03950708.1| 30S ribosomal protein S4 [Lactobacillus gasseri JV-V03] # 1 208 1 208 208 381 87 1e-105 MEDIFMSRYTGPSWKRSRRLGISLSGTGKEISRRNYAPGDHGPGNRTKVSEYGEQLKEKQ KLRWMFGLNERQFRNLFVLAGKIREGKHGVNFMIMLEKRLDNVVYRLGLATTREQARQLV NHGHILVDGKRVDIPSFQVKVGQEISLKEKSKNLQQVKDALEATVSRPAFVTFDESKMTG SLVRLPERDEMEPEIDESLVVEWYNKKL >gi|308165861|gb|AEHO01000008.1| GENE 67 67735 - 69072 1462 445 aa, chain + ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 11 439 3 425 427 476 58.0 1e-134 MKYIIEDVQKMQPLAYRMRPHSLTDVVGQQHLIGPGKIITRMVEAKLLSSMILYGQPGIG KTSIATAIAGATKYAFRKLNAATDSKKDLQIVAEEGKMSGTVILLLDEIQRLDKSKQDFL LPLLESGQIILIGATTENPYIAISPAIRSRCQIFELKPLQSEDISKAIDHALLDPINGLG KENVTLTPEARNILIQKGNGDLRSTLNALELAVLSTKQELMQTNQYHNKLTISESEMLNS VQFKSYNFDSNGDSHYNLLSAFQKSIRGSDTDAALFYLAELCLAGDLKSICRRLLVTAYE DIGLANPAACSRTTLAVQAAEAVGLPEAKIILANSIIELCTSPKSNSAYLAINQAIDLVA NTKDIDIPLSLKDAHFKGAAKLKHGQGYKYPHDFNKDWIAQQYLPDQLINTILFKPKGNS KFEEAIKAQYLKLKDLQTKNLNKSN >gi|308165861|gb|AEHO01000008.1| GENE 68 69327 - 69611 195 94 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSILQLIILLFIMLILLVAYFLYKCQLQNTFLIYNIKDNNNLRNLFKCTSLILVLVAILG LIILFSFDKYYNLITLFLASVVLVLFSLMLNILK >gi|308165861|gb|AEHO01000008.1| GENE 69 69669 - 70142 592 157 aa, chain + ## HITS:1 COG:SP1996 KEGG:ns NR:ns ## COG: SP1996 COG0589 # Protein_GI_number: 15901819 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 1 146 1 146 150 150 52.0 1e-36 MSKQYKNIQIAIDGSKEADVAFKSAVEIAILNDANLEILHVVDTRAFQDVSSFDSEMVEQ VSNDAKTKIEDYYQRALDAGLKHVHYSIEYGSPKNIIAHEFPNEHNIDLIVIGATGLNVI ERLLIGSVTEYVTRTAACDVLVIRQQLAQKQDIKNNK >gi|308165861|gb|AEHO01000008.1| GENE 70 70327 - 71544 865 405 aa, chain - ## HITS:1 COG:SA1835 KEGG:ns NR:ns ## COG: SA1835 COG0582 # Protein_GI_number: 15927603 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 181 383 167 367 390 75 27.0 1e-13 MSEKRRDNKGRILKTGESQRKDGRYLYKYIDSFGEPQFVYSWKLVATDRVPAGKRDCISL REKIAELQKDIHDGIDVVGKKMTLCQLYAKQNAQRPKVRKNTETGRKYLMDILKKDKLGV RSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVRKNPFDFQLKAV LDDDTVPKTVLTEEQEEKLLAFAKADKTYSKNYDEILILLKTGLRISEFGGLTLPDLDFE NRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFKRVLANRKNDKRVEIDGY SDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLPHITPHSLRHTFCTNYANAGMNP KALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKEKQQERLVA >gi|308165861|gb|AEHO01000008.1| GENE 71 71626 - 71829 235 67 aa, chain - ## HITS:1 COG:no KEGG:SPH_1403 NR:ns ## KEGG: SPH_1403 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 67 1 67 67 111 100.0 7e-24 MKQTDIPIWERYTLTIEEASKYFRIGENKLRRLAEENKNANWLIMNGNRIQIKRKQFEKI IDTLDAI >gi|308165861|gb|AEHO01000008.1| GENE 72 71813 - 72064 145 83 aa, chain + ## HITS:1 COG:no KEGG:SPH_1404 NR:ns ## KEGG: SPH_1404 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 83 1 83 83 162 100.0 3e-39 MSVCFIKSSFPNHLFGFHKSCFTSNRTALAKLTGVPPLHGSHVAILIACDGFITLGLLTV WEYHYHDKNVVAGNPAKDCFSDH >gi|308165861|gb|AEHO01000008.1| GENE 73 72290 - 72520 263 76 aa, chain - ## HITS:1 COG:no KEGG:SPH_1405 NR:ns ## KEGG: SPH_1405 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 76 1 76 76 142 100.0 5e-33 MKTQYPMIPFPLIVKATDGDTEAINQILHHYRGYITKRSLRLMKDEYGNQSMVVDEVLRG RMETRLITKILSFEIK >gi|308165861|gb|AEHO01000008.1| GENE 74 72517 - 72939 424 140 aa, chain - ## HITS:1 COG:no KEGG:SAG0919 NR:ns ## KEGG: SAG0919 # Name: not_defined # Def: Tn916 hypothetical protein # Organism: S.agalactiae # Pathway: not_defined # 1 140 18 157 157 251 100.0 8e-66 MKPSSFQTTIENQFDYICKRAMEDERKNYMLYLSRIAKREVSFSDVGDYLVSQFATTDNY STDFQIFTLNGLSVGVENDLLSEALRELPDKKREILLLFYFMDMSDSEIADLLKLNRSTV YRHRTSGLALIKKFMEEFEE >gi|308165861|gb|AEHO01000008.1| GENE 75 72896 - 73084 106 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256960284|ref|ZP_05564455.1| ## NR: gi|256960284|ref|ZP_05564455.1| conserved hypothetical protein [Enterococcus faecalis Merz96] conserved hypothetical protein [Enterococcus gallinarum EG2] conserved hypothetical protein [Enterococcus faecalis Merz96] conserved hypothetical protein [Enterococcus gallinarum EG2] # 1 62 1 62 62 114 100.0 3e-24 MLFWLFRTFLQSLFISNATNPPFTLGLRVKGDKRARLTSFPRQKGGEKHETIFFSDHNRK SV >gi|308165861|gb|AEHO01000008.1| GENE 76 73444 - 73797 274 117 aa, chain + ## HITS:1 COG:no KEGG:SPH_1408 NR:ns ## KEGG: SPH_1408 # Name: not_defined # Def: transcriptional regulator, putative # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 117 1 117 117 216 100.0 3e-55 MRKKEDKYDFRAFGLAIKEARLKRGLTREQVGALIEIDPRYLTNIENKGQHPSIQVLYDL VSLLHVSVDEFFLPANNLVKSTRRLQIEKYMDSFTDKELSLMESLASGINEARNIED >gi|308165861|gb|AEHO01000008.1| GENE 77 74143 - 75183 605 346 aa, chain - ## HITS:1 COG:CAC1448 KEGG:ns NR:ns ## COG: CAC1448 COG0480 # Protein_GI_number: 15894727 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 6 345 308 647 652 189 31.0 6e-48 MYTSINGELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPS KPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIEL KEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSF QNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGT ELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDL TFFTNGRSVCLTELKGYHVITGEPVCQPRRPNSRIDKVRYMFNKIT Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:40:34 2011 Seq name: gi|308165858|gb|AEHO01000009.1| Lactobacillus iners LactinV 09V1-c contig00031, whole genome shotgun sequence Length of sequence - 5681 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 4655 5922 ## gi|309804824|ref|ZP_07698887.1| Gram-positive signal peptide protein, YSIRK family - Prom 4711 - 4770 4.0 - Term 4993 - 5041 8.3 2 2 Tu 1 . - CDS 5085 - 5681 547 ## HMPREF9243_0917 LPXTG-motif cell wall anchor domain protein Predicted protein(s) >gi|308165858|gb|AEHO01000009.1| GENE 1 2 - 4655 5922 1551 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804824|ref|ZP_07698887.1| ## NR: gi|309804824|ref|ZP_07698887.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LactinV 09V1-c] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LEAF 2052A-d] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LactinV 09V1-c] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LEAF 2052A-d] # 1 1551 1 1551 1552 2890 100.0 0 MGISKNNLQNKLQQEARQVPHFGIRKLAIGTASVLLSTSLYFGAMGRLVQANANVATGNN VENEKINSGKKDTDRATNDHVEQPKKNIDGGQCLLVKDGKYDQQQWQNQYNEEARNRIES KQAVYDLEDELSQVSEAKRAELIKELQQPLSTEQRKQKVQEIKKTINKIVQDTLPSAKKE AHDKVQKMENLIDPEKKPYYNKIQQAKNKKELREIEQQAELEALKRETNDYITSQYNNYH SNAELNDSENQEYKNWANKRLDLYAKIALHPETELSSEADKHDFNKLKAVLAYARRAADS VITGWDTDQDLEHNQTIDYYSHIFADGHMTDRKQYIANDWSKGKKPHSGQLIDPSNISEQ ITRQADGTYEWQVSFNNNNLKTGKARFYFTVPRDQEIIEDQNHPMEVYRDGENSKSITST NMQGVARIDDKAKQFTNMVNEIAAQPDWRSLKQKFAMRHGDTTGAVDPDWDKDATINGNR VPDRRGFWINSFIDGYTYNPGWPRSGQCKTLQGIIFGLNDGGRDPNKPVTRLMLNEGYDV SKQPEFTAKSPRAVGKSVRLVGDASDRLLERINTIQKRRDLVFMQTMIDSDAMSFRFYTR NVDPAKRGREHKIESVIGTRSFESNTNHSLVKLIDTYVSAQRPEPVLTQPITVPLGVEPD VKDGIENLPAQQKSNHFSWLSNNKPIVYELTQSGKPVLGEAISQDAHRSISNIDLQIPVN VVGVFKEGQDFNTVKQGVIPGQMIRVSKAGATGDFKAQTLNYGLSIDKDGNLTGKPKITD WKPGECQRKVVLDLTFNGKATQVPITIVRSEQAPAVTIYEGNKTDFAQNPDGNRVTNTYN NRISLVFYKGENKTYTVAATDDQTIKQATYQLSNNQPLSKDIKGLKVNDQDQAIKAQSNK KGAKTDPYRFTISGPVSTSKQGTSDYVTPGHYTRQIVAVDNEGLKTTYTFDIEVREKAQN ARLAGNELHRTVGDTFSEFYQNKADANQLTTGTKPAGITWGFEGKTPLDIVTKEGNQYKH SRAGYFEYVATATFSDNSVVKTTGEKDHEHVRITVKPQTPSFTASELNEAGNVKNKQLTI NVQKGLPKGAVVTVYSDQAGQNAIGHATVDTNDQTSVKVTVSKVPVGKLYVQTAVTGPDQ CYLTKQPVTVKSDMGEGTATKLPAQATLTLTNNGNETIKPYTTVDNKTKTITIIAGKQFD INGDVTDRIDVIKDTVVQPSHENEGKSAESWMNPVEKGPDGTQAKRDRNYQKQYSQRDSK RESLGSKANPYKISLSGTAPEKIGKYYIKFQTWNGDDRAETTEWKVKVVTPAPKLEGGLF GGREESAKHPWYNPNGYSINTMVSKGIDRLTYTVTDKNGKIIERSDQLDDNFVIHEDLYK NADGSYRENEDFTLTIAANKYDNGDEAECCLPTVKTVKFQWKDFDIPTFTRDEKRKGTII YINGKEKGFIPDGKQGEQGKQGQAGKNGTSVTIKSITSDKSGNHVITFSDGKSVTVENGK NGKNGINGKNGESFIDPHVDKNGDLYVTVVDANGNKSQKKIGHVKGDKGDP >gi|308165858|gb|AEHO01000009.1| GENE 2 5085 - 5681 547 198 aa, chain - ## HITS:1 COG:no KEGG:HMPREF9243_0917 NR:ns ## KEGG: HMPREF9243_0917 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: A.urinae # Pathway: not_defined # 44 149 1631 1736 2257 69 43.0 9e-11 ADTKLTLIPTSNGVTGEPTEVTVKDVPVVIDVPVVSGNSTIESINEIPVIIDGKAINPEN GSAKTVVSGKTTPKAKVEVKDKDGKTIGTGTADDQGNFTVAVPKQDPDTKLTLVPTANGV TGESSEVTVKDDIVNNVKIKSSKSVDNTNASDTHIRSDKATAHELPQTGNNSFALTGLLL AGIAAMLGISGYRRKNKD Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:42:03 2011 Seq name: gi|308165765|gb|AEHO01000010.1| Lactobacillus iners LactinV 09V1-c contig00056, whole genome shotgun sequence Length of sequence - 94528 bp Number of predicted genes - 95, with homology - 91 Number of transcription units - 38, operones - 26 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 432 - 478 8.7 1 1 Op 1 . - CDS 551 - 2008 1824 ## LJ1313 hypothetical protein - Prom 2043 - 2102 6.5 2 1 Op 2 . - CDS 2110 - 2760 859 ## COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein - Prom 2802 - 2861 10.2 + Prom 2755 - 2814 7.5 3 2 Tu 1 . + CDS 2877 - 4286 1106 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 4509 - 4548 0.6 4 3 Op 1 31/0.000 + CDS 4669 - 5982 1280 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 5 3 Op 2 34/0.000 + CDS 5951 - 6277 295 ## COG0765 ABC-type amino acid transport system, permease component 6 3 Op 3 . + CDS 6270 - 7025 271 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 + Term 7028 - 7080 8.6 - Term 7016 - 7068 9.4 7 4 Tu 1 . - CDS 7085 - 8788 199 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 8903 - 8962 5.0 - Term 8912 - 8950 2.1 8 5 Op 1 . - CDS 8964 - 9812 739 ## LGAS_0084 restriction endonuclease 9 5 Op 2 . - CDS 9885 - 10532 591 ## COG1896 Predicted hydrolases of HD superfamily - Prom 10559 - 10618 9.6 - Term 10588 - 10625 4.1 10 6 Op 1 . - CDS 10646 - 10780 201 ## 11 6 Op 2 . - CDS 10837 - 11208 369 ## FI9785_136 hypothetical protein - Prom 11230 - 11289 4.5 12 6 Op 3 . - CDS 11292 - 11516 73 ## - Prom 11640 - 11699 4.2 + Prom 11178 - 11237 11.9 13 7 Op 1 . + CDS 11416 - 12522 1055 ## COG0471 Di- and tricarboxylate transporters 14 7 Op 2 3/0.000 + CDS 12538 - 13089 608 ## COG1704 Uncharacterized conserved protein 15 7 Op 3 . + CDS 13092 - 13985 687 ## COG0501 Zn-dependent protease with chaperone function + Term 14144 - 14170 0.1 + Prom 13988 - 14047 5.5 16 8 Op 1 4/0.000 + CDS 14190 - 14738 599 ## COG4721 Predicted membrane protein 17 8 Op 2 . + CDS 14713 - 16086 173 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 18 8 Op 3 . + CDS 16100 - 16786 363 ## LJ0072 ABC transporter permease component + Term 16824 - 16854 -0.9 19 9 Tu 1 . - CDS 16758 - 17219 556 ## COG1576 Uncharacterized conserved protein - Prom 17288 - 17347 8.2 - Term 17733 - 17779 1.3 20 10 Op 1 3/0.000 - CDS 17788 - 18960 1555 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 21 10 Op 2 4/0.000 - CDS 18996 - 19793 808 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 22 10 Op 3 . - CDS 19818 - 20537 460 ## COG4853 Uncharacterized protein conserved in bacteria - Prom 20581 - 20640 6.8 23 11 Op 1 . - CDS 20645 - 21979 936 ## LGAS_0066 hypothetical protein 24 11 Op 2 8/0.000 - CDS 21969 - 23750 1568 ## COG5002 Signal transduction histidine kinase - Prom 23773 - 23832 2.6 - Term 23815 - 23843 -0.1 25 11 Op 3 . - CDS 23848 - 24552 897 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 24776 - 24835 78.9 + TRNA 24759 - 24831 85.0 # Lys CTT 0 0 - Term 24824 - 24867 4.6 26 12 Op 1 4/0.000 - CDS 24881 - 26218 319 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 27 12 Op 2 . - CDS 26242 - 27567 1319 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases - Prom 27672 - 27731 8.3 + Prom 27630 - 27689 10.6 28 13 Tu 1 . + CDS 27825 - 28112 323 ## gi|259500794|ref|ZP_05743696.1| hypothetical protein HMPREF0520_0304 + Term 28146 - 28186 5.2 - Term 28180 - 28225 6.6 29 14 Op 1 . - CDS 28323 - 28601 135 ## Ldb0080 hypothetical protein 30 14 Op 2 . - CDS 28561 - 28665 76 ## - Prom 28734 - 28793 9.5 - Term 28803 - 28848 6.6 31 15 Op 1 . - CDS 28856 - 29767 1012 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 32 15 Op 2 . - CDS 29817 - 31169 1292 ## COG1114 Branched-chain amino acid permeases - Prom 31198 - 31257 6.6 33 15 Op 3 . - CDS 31261 - 32712 1156 ## COG0531 Amino acid transporters - Prom 32736 - 32795 9.8 34 16 Op 1 . - CDS 32830 - 33336 582 ## COG0708 Exonuclease III 35 16 Op 2 . - CDS 33366 - 33656 309 ## COG0708 Exonuclease III 36 16 Op 3 . - CDS 33676 - 34368 471 ## COG1011 Predicted hydrolase (HAD superfamily) 37 16 Op 4 . - CDS 34374 - 34895 418 ## LAF_0389 hypothetical protein - Prom 34994 - 35053 6.4 + Prom 34907 - 34966 11.5 38 17 Tu 1 . + CDS 35019 - 35855 847 ## COG1307 Uncharacterized protein conserved in bacteria + Term 35894 - 35929 4.4 + Prom 35896 - 35955 9.3 39 18 Op 1 4/0.000 + CDS 36108 - 37121 973 ## COG0208 Ribonucleotide reductase, beta subunit + Prom 37145 - 37204 4.8 40 18 Op 2 18/0.000 + CDS 37293 - 37547 269 ## COG1780 Protein involved in ribonucleotide reduction 41 18 Op 3 . + CDS 37537 - 39714 1830 ## COG0209 Ribonucleotide reductase, alpha subunit - Term 39740 - 39768 -0.9 42 19 Op 1 11/0.000 - CDS 39803 - 41695 1963 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 43 19 Op 2 10/0.000 - CDS 41707 - 43092 1281 ## COG0486 Predicted GTPase - Prom 43112 - 43171 5.3 - Term 43111 - 43160 1.1 44 19 Op 3 22/0.000 - CDS 43192 - 44067 690 ## COG0706 Preprotein translocase subunit YidC 45 19 Op 4 . - CDS 44069 - 44440 254 ## COG0594 RNase P protein component - Term 44458 - 44488 2.0 46 19 Op 5 . - CDS 44489 - 44629 230 ## PROTEIN SUPPORTED gi|227521920|ref|ZP_03951969.1| ribosomal protein L34 - Prom 44683 - 44742 9.5 + Prom 45065 - 45124 3.5 47 20 Op 1 16/0.000 + CDS 45150 - 46469 1311 ## COG0593 ATPase involved in DNA replication initiation + Term 46482 - 46525 4.2 + Prom 46558 - 46617 10.5 48 20 Op 2 6/0.000 + CDS 46641 - 47771 1131 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) + Prom 47893 - 47952 9.7 49 21 Op 1 9/0.000 + CDS 47973 - 48218 157 ## COG2501 Uncharacterized conserved protein 50 21 Op 2 . + CDS 48222 - 48947 445 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 51 21 Op 3 9/0.000 + CDS 48991 - 49344 350 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 52 21 Op 4 . + CDS 49345 - 50067 762 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit + Prom 50137 - 50196 3.8 53 22 Op 1 24/0.000 + CDS 50238 - 51305 1040 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 54 22 Op 2 . + CDS 51315 - 53762 2579 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 53891 - 53924 -1.0 + Prom 53823 - 53882 5.2 55 23 Op 1 24/0.000 + CDS 53940 - 54236 466 ## PROTEIN SUPPORTED gi|42518091|ref|NP_964021.1| 30S ribosomal protein S6 56 23 Op 2 21/0.000 + CDS 54272 - 54727 623 ## COG0629 Single-stranded DNA-binding protein 57 23 Op 3 . + CDS 54756 - 54992 353 ## PROTEIN SUPPORTED gi|42518093|ref|NP_964023.1| 30S ribosomal protein S18 + Term 55017 - 55062 6.0 + Prom 55055 - 55114 8.4 58 24 Op 1 9/0.000 + CDS 55160 - 57175 2248 ## COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain 59 24 Op 2 16/0.000 + CDS 57191 - 57646 603 ## PROTEIN SUPPORTED gi|42518096|ref|NP_964026.1| 50S ribosomal protein L9 60 24 Op 3 . + CDS 57652 - 59025 1327 ## COG0305 Replicative DNA helicase + Term 59031 - 59085 6.2 61 25 Op 1 . - CDS 58960 - 60225 1125 ## LGAS_0015 hypothetical protein 62 25 Op 2 . - CDS 60232 - 60918 573 ## COG1285 Uncharacterized membrane protein - Prom 61082 - 61141 76.1 + TRNA 61065 - 61137 82.1 # Thr AGT 0 0 + Prom 61065 - 61124 77.3 63 26 Op 1 . + CDS 61304 - 62692 1427 ## COG0362 6-phosphogluconate dehydrogenase + Term 62712 - 62750 6.4 64 26 Op 2 . + CDS 62760 - 64310 1278 ## COG0038 Chloride channel protein EriC 65 27 Tu 1 . - CDS 64470 - 65558 647 ## COG0477 Permeases of the major facilitator superfamily - Prom 65702 - 65761 4.4 + Prom 65355 - 65414 5.2 66 28 Tu 1 . + CDS 65521 - 65715 129 ## 67 29 Tu 1 . - CDS 65791 - 67101 1238 ## COG2252 Permeases - Prom 67229 - 67288 10.6 + Prom 67200 - 67259 12.7 68 30 Op 1 2/0.000 + CDS 67446 - 68543 1360 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein + Prom 68589 - 68648 13.0 69 30 Op 2 15/0.000 + CDS 68678 - 69766 1328 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein + Term 69787 - 69823 4.0 70 30 Op 3 . + CDS 69834 - 70976 1075 ## COG3845 ABC-type uncharacterized transport systems, ATPase components 71 30 Op 4 24/0.000 + CDS 70973 - 71353 510 ## COG3845 ABC-type uncharacterized transport systems, ATPase components 72 30 Op 5 26/0.000 + CDS 71362 - 72474 1252 ## COG4603 ABC-type uncharacterized transport system, permease component 73 30 Op 6 . + CDS 72474 - 73430 874 ## COG1079 Uncharacterized ABC-type transport system, permease component + Term 73437 - 73485 13.1 74 31 Tu 1 . - CDS 73459 - 74415 956 ## COG0276 Protoheme ferro-lyase (ferrochelatase) - Prom 74440 - 74499 6.8 - Term 74521 - 74584 8.1 75 32 Tu 1 . - CDS 74590 - 76011 1499 ## COG3104 Dipeptide/tripeptide permease - Prom 76152 - 76211 11.7 + Prom 76114 - 76173 7.2 76 33 Tu 1 . + CDS 76393 - 76962 566 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Prom 76979 - 77038 8.7 77 34 Op 1 3/0.000 + CDS 77083 - 77727 611 ## COG1428 Deoxynucleoside kinases 78 34 Op 2 . + CDS 77740 - 78405 691 ## COG1428 Deoxynucleoside kinases 79 34 Op 3 . + CDS 78427 - 79737 1450 ## COG2252 Permeases 80 34 Op 4 . + CDS 79755 - 80402 437 ## LGAS_1838 metal-dependent membrane protease + Term 80404 - 80451 12.2 - Term 80398 - 80433 5.3 81 35 Op 1 . - CDS 80450 - 81289 746 ## COG0475 Kef-type K+ transport systems, membrane components 82 35 Op 2 3/0.000 - CDS 81366 - 81611 295 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 81732 - 81791 7.9 83 35 Op 3 . - CDS 81797 - 82288 378 ## COG0517 FOG: CBS domain - Prom 82322 - 82381 11.7 + Prom 82313 - 82372 8.3 84 36 Op 1 . + CDS 82442 - 83038 609 ## FI9785_1737 hypothetical protein 85 36 Op 2 . + CDS 82978 - 83589 366 ## FI9785_1737 hypothetical protein 86 36 Op 3 . + CDS 83606 - 83902 274 ## LJ1785 hypothetical protein 87 36 Op 4 . + CDS 83965 - 84120 73 ## gi|259500728|ref|ZP_05743630.1| conserved hypothetical protein 88 36 Op 5 6/0.000 + CDS 84139 - 85656 1839 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 89 36 Op 6 7/0.000 + CDS 85653 - 86870 748 ## COG1696 Predicted membrane protein involved in D-alanine export 90 36 Op 7 6/0.000 + CDS 86916 - 87155 394 ## COG0236 Acyl carrier protein 91 36 Op 8 . + CDS 87148 - 89433 2338 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) + Term 89445 - 89497 12.3 - Term 89428 - 89484 3.0 92 37 Op 1 36/0.000 - CDS 89485 - 91926 1541 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 93 37 Op 2 2/0.000 - CDS 91936 - 92439 399 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 94 37 Op 3 . - CDS 92408 - 92638 94 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 92745 - 92804 12.4 + Prom 92672 - 92731 15.4 95 38 Tu 1 . + CDS 92834 - 94249 1119 ## COG0531 Amino acid transporters Predicted protein(s) >gi|308165765|gb|AEHO01000010.1| GENE 1 551 - 2008 1824 485 aa, chain - ## HITS:1 COG:no KEGG:LJ1313 NR:ns ## KEGG: LJ1313 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 274 1 278 509 107 28.0 1e-21 MSKEKVIKKISVSALLAGAMICTNVLNENAQKAQAATDETPINTVATVQYNGKGKVRLLD GNGQWQDQYVANNTRWKTFAKATIRNMTMYRLGTDKQWIPARYTDLPEDVTPADTTVNTS VDTSKAATNRQPLHTVGYTHYDGAGKIRLLDDNGQWQDQYVAKGRKYKVFEQATIRNQTM YRIGTNQQWIPSAYFTLETPYVTPTYSVYDAGISDSASVTTNTPASTDDISSQIMSNYKN IFGTNSNTDSSSVVNNIPTITPNIDTATPESSATITDGAHSWEAQPYIIDSNGNATEMTS DDVYHFFHPTPKPVDPNEGMWSQAQIEEAEQYFFDYINNIRIQHGLQPFENGNNVSWIRD GVKTRAAENKQLVEEGRGIAHQRPNGTSCFTAFSEPAGGFVTGECLGQTLSQSSTEHFYS ETPQQAATNVAQSFIAEGPNGGHYQALMTPSKNIYMGVAFAATHDPQAGGSMDYIAAVAT ATMGN >gi|308165765|gb|AEHO01000010.1| GENE 2 2110 - 2760 859 216 aa, chain - ## HITS:1 COG:TM1296 KEGG:ns NR:ns ## COG: TM1296 COG3341 # Protein_GI_number: 15644051 # Func_class: R General function prediction only # Function: Predicted double-stranded RNA/RNA-DNA hybrid binding protein # Organism: Thermotoga maritima # 2 67 6 72 223 62 47.0 5e-10 MKFYAVRKGRKVGIFNTWQETKENVDNFSGAEYKSFNSMEAAQAYLNADKPAVDDYSDCD IIVYTDGGCRNNGVHKGGHVKKDDKAAWAYTIRCKDETCSIDGVGGERGATNNQMELTGL IEAIEMLIKKNWQNRKIRFCLDSKYVIENIDRLSTWKAAGWRNTSGLVANKDKWQKLEPL LQECTNKSFFWVKGHADSEGNNYVDRKLNEYMDDEM >gi|308165765|gb|AEHO01000010.1| GENE 3 2877 - 4286 1106 469 aa, chain + ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 2 469 24 487 487 417 44.0 1e-116 MIISFYIVFRHQRSVATSWAWLIILLIFPVAGFIVYGFIGRGISKENLFAINKQKHISLD KVNKMQAYSLEKIFSNDTSHKAIQLIKYFNNQKEAPLSKNNAIEIYTDNQSNFQKIFNDM QNAHHTINVEYYSFMNDQLGNKFLNLLIDKAKNGIKVRIIFDPWGSLGTKLSWFKPLIKI GGEVIPFITSQNNIKKYRINYHMHRKIVVIDGKIAWTGGYNIGDQYIGHNKKFGYWRDTN IRLVGPASLLLQERFVMDWNASNDYKHTIKFSDLLFPKCNNDPYNTNHSTVQVVNDGPDK EVPYLRNGMIKLMMMAKESIWIQTPYLIPDDPMIATWVTAATSGVDVRIMIPCMPDHIGI YRATEWYANYLMNMGIKIYIYEKGFLHAKTVTIDNDFSTVGSMNQDYRSYLLNFEDEIII YDNTITKQLKDIFKHDMCECYQLTPTITERWSKWLKFKQAFARMFSPFL >gi|308165765|gb|AEHO01000010.1| GENE 4 4669 - 5982 1280 437 aa, chain + ## HITS:1 COG:SP0453_1 KEGG:ns NR:ns ## COG: SP0453_1 COG0834 # Protein_GI_number: 15900370 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 17 331 7 325 325 241 45.0 2e-63 MKSKINTFMIMILFLCSIITVSFSHTSIVNAKTKEPLKIGMEANYPPYNWTQNTDAHGAV PIDGSKQFANGYDVQIAKIIGKKLHRRVIVEKTVWDGLLPSLTSGKIDLIIAGMSPTSER RKAIDFSIPYRKSTFVLIVNNASNFATATKLTEFKGAKLTAQQGTLHYDLIKQLVGAKRL TAMRDFSVMRQSLASGTIDGYVAEDIEYQSYHRVNPNIVSINLSKMPHFHVNYNDSITSI GVKKGNTKLLNQVNQILKTISDNKREKLMSFAIKQQPQVSTTKKTNWFVSIMHRYGKMIL NGVIMTVFLSLIGTIIGFFIGLLVGIIRTIPTPISKVKYWLLKLINWLLAVYVEIFRGTP MMVQAAVIYYGIAQLWHINLDRTLAALFIISINTGAYLAEVIRGGIISTPKGQFEAASAL GMSHSQKNVAYNSAASS >gi|308165765|gb|AEHO01000010.1| GENE 5 5951 - 6277 295 108 aa, chain + ## HITS:1 COG:SPy0277_2 KEGG:ns NR:ns ## COG: SPy0277_2 COG0765 # Protein_GI_number: 15674455 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 99 138 235 239 114 56.0 6e-26 MWHIILPQAVRNCLPSITNEFIVNIKDTSVLSIISVSELFFVGTTVASQTFQFFQTYFII SIVYLILTFSITRIFRLIENKLEGPKNYNLMANQLQVDEPKEGENEND >gi|308165765|gb|AEHO01000010.1| GENE 6 6270 - 7025 271 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 1 221 1 218 309 108 31 8e-23 MTNSNKKILQIQHLQKKFGNNFVLKDISFDVTQGEILTIIGPSGGGKSTMLRCLNLLEEP YKGIINFHDENILDPSFDRNLYRSKVGMVFQQFNLFNNKNVLQNCMVGQELVLGRSKEEA KRIAIENLKKVGMEPYIEAKPKQLSGGQQQRVAIARAISMNPEILLFDEPTSALDPEMVG EVLNTMNDLAKTGLTMIIVTHEMAFARNISDHVIFMSDGIITEQGQPNEIFNHPQEEKTK KFLRNFKNENL >gi|308165765|gb|AEHO01000010.1| GENE 7 7085 - 8788 199 567 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 348 557 16 231 245 81 28 2e-14 MQTTKDYVKLFFKQNKFVAFVSALVFIILSTTYSIVSWIMQVIFDYMAGNSTYSFESILL MLGGYLFVAASLFMVQRSVYPRFLEKAMNQYKEAVIKKLFKKSYSDFLITNSGTYLSVLT NDCERILETYLKNIFEFIQNIIMVVSSLTLMLYYNSLLTIIAIVIAMIPMVCSLLTARSI ATREEQVSKTNESYVSLTKDILNGISVIKSFKVENEAISRYQNKSMQLEHTKKMREQTFT VVSACGTIAYMVTQFGVMVIGAWMIHEHIGTMTAGMILAFINLMNGILQPINALPRIYGG MSGAKKLITKMSDYMSNAKEDTGETIKQPLANIALQDVSYAYDTDHTILKHINLQLQAGK SYAVVGPSGAGKSSLINLLMGYYQNYDGSVHFNNYELKQISKYSLYEKITLMQQSVFIFD ASIWDNITLFKQFPDAEVDRVIHLAGLDHLISQKGRDYQCGENGSHLSGGEKQRIAIARS LLKKSEILLVDEATSALDNETSANVTQSILDLQGILRLVVTHRLDASSLKQYDEILVMKD GALIERGNFDTLMDSKEYFYSLYTISK >gi|308165765|gb|AEHO01000010.1| GENE 8 8964 - 9812 739 282 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0084 NR:ns ## KEGG: LGAS_0084 # Name: not_defined # Def: restriction endonuclease # Organism: L.gasseri # Pathway: not_defined # 2 267 26 294 309 275 54.0 2e-72 MKLFSVCDICQLRGVDPLKYENKVVQKLSEICMFNFCGKVTKAIVATKYTTFVIPKYKRA YEAFIQDYDCNDVAIDQINRNTFYQFVIKSEKGELPSPELTNTFEENLLQLGIKADFSFN KIDYIDREYIRNKYKYRCQYCGRRGTSVDHKDPVCFSHDNGLDNLILSCSECNKIKGNMS YQSFCKMNAKIKNINKKLVKYETYLNCLHELFDENKRYIDGQVHLRGVIRDTEIDAMRKQ NKSLHDAIDSLQSDYDKLRLIRKNYFEVNDNITNAEKTDKLF >gi|308165765|gb|AEHO01000010.1| GENE 9 9885 - 10532 591 215 aa, chain - ## HITS:1 COG:lin2634 KEGG:ns NR:ns ## COG: lin2634 COG1896 # Protein_GI_number: 16801696 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Listeria innocua # 1 191 1 190 215 228 58.0 6e-60 MGLHAYIQGFSSLESIDRAPGYFKYQHHSVAAHCFRTAELAQIMGDIEEVIGGQKINWKA LYEKSLNHDYTERFIGDIKTPVKYATPELRKMIGEVEETMTAKFIKDEIPAEFQDIYKKR LSEAKDDTLEGQILSICDKLDLLYEAYGEIELGNPSFVYMQMFKESLATIKTYDNLACVK YFIQKILPDLFKGDFAGKDKMERIAFSILLMGDEQ >gi|308165765|gb|AEHO01000010.1| GENE 10 10646 - 10780 201 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRNIHTGINPHRRPRNKDNSKERVAHAAKVVAFLNKAKADENK >gi|308165765|gb|AEHO01000010.1| GENE 11 10837 - 11208 369 123 aa, chain - ## HITS:1 COG:no KEGG:FI9785_136 NR:ns ## KEGG: FI9785_136 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 116 1 116 136 114 56.0 2e-24 MLIKKIISLNIKTAAADLLQNKIFDKSVIILALNDGSNKYSTVGGTCTIGANFQLVILSK YDSQYDIEIDNNMNIPMYTSQDELQYLTKGLTLGAKAGVLFLSSDEGIIDSAVSINNKTC HTN >gi|308165765|gb|AEHO01000010.1| GENE 12 11292 - 11516 73 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSPNLGLAKQRLKIVIITVICKIRSLNIFLMTVIRGSPLKNYTCLFCTFYTGISFDKKEA HTYTSIVSVFLIFR >gi|308165765|gb|AEHO01000010.1| GENE 13 11416 - 12522 1055 368 aa, chain + ## HITS:1 COG:L20481 KEGG:ns NR:ns ## COG: L20481 COG0471 # Protein_GI_number: 15673760 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Lactococcus lactis # 35 367 49 391 392 125 29.0 1e-28 MTVIRNIFKDRILQITVIITILSLCFARPRLGDINTHTLFSILAMLTIIQIFSYLHVLDV LAYKLTASASNTRRLTVIFTFLSVISAMFLTNDITVLTLIPLYLTIARRYKLPEILPVTL IGMGANIGAAFTPWGNPHNIYIVNRYTVTPIQFFKWSLPLLSVSLILLIIMLMFVKNTPI PSLPKEDIRISIRPMILTIVVSIFFFFGIFNVVPVYVPAILAILLTIFINKTILLHIDYA LLLTFTCFFVFISDIQQIPFIVNEISKAMSNEHLVYLTSILSSQCISNVPSTILIGKFTN YAEALFLGSNIGGFGTLVGSMANMLVFKSFLEHGTISRKKFFCMFSLLQFTGLIVLMILG WLVLYFVI >gi|308165765|gb|AEHO01000010.1| GENE 14 12538 - 13089 608 183 aa, chain + ## HITS:1 COG:lin0961 KEGG:ns NR:ns ## COG: lin0961 COG1704 # Protein_GI_number: 16800030 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 6 183 8 185 185 196 54.0 2e-50 MILAIIIILIILIVLYIAIYNGLQRAKVNIEESWSQIDVQLKRRNDLIPNLVETVKGYAK HESETLEKVIQLRNQLVQIPTGNHQEQMQVSNQLTDSLKSIFALSESYPNLKANENFAQL QEELVNTENKLAYSRQLYNSTVSFFNKKILVFPSNIVASIHGFTKQEFLATPSEERNVPK VKF >gi|308165765|gb|AEHO01000010.1| GENE 15 13092 - 13985 687 297 aa, chain + ## HITS:1 COG:SPy0331 KEGG:ns NR:ns ## COG: SPy0331 COG0501 # Protein_GI_number: 15674492 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Streptococcus pyogenes M1 GAS # 1 297 1 298 298 263 47.0 4e-70 MLYQQITKNKRKTVILLAIFVIILAIIGAVSGKIFYNSPIEGIMWSIFASVVYLLIGLAN PASMIMRMNHAIEIKEQDDPELWHVVEDMAMVAQVPMPRVFIIEDDSPNAFATGKNPQNS CIAVTMGLRKMLTREELEGVIGHEISHIKNYDILVSTVAIVLVAVISFIGNLTCNVFLYF GNIFSDKDDDRNANWGWLIYLFMRIFSSLLVFSATLVQFALSRNREYLADAGSVELTRNP KGLISALTKISTSEPMTVADKSSASLYFENPFHKHGLTHLFDTHPTTKKRIERLEKM >gi|308165765|gb|AEHO01000010.1| GENE 16 14190 - 14738 599 182 aa, chain + ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 170 1 176 186 113 39.0 2e-25 MTSKLHIRDIIFIALIAVMFGGIYILSNQLYNALVFLGPLANDICMGLWCMAGPLAGFVV KLPGTSFLGELLSAAAEGLFGGQWGISTLISGIVQGIGSELGFAAFIYRKYNIFTLIVSA TINTFITFGWDFMKNGYNKLPLNTNLLCLGVRWISMIVFCTIIVNSIVKLLDKAHVLTKY NH >gi|308165765|gb|AEHO01000010.1| GENE 17 14713 - 16086 173 457 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 261 442 28 208 309 71 29 2e-11 MYSQNIIINNLSFNYDVNTILKNINLTIPRGGFSLIIGPNGCGKSTLLRLIAGLYPQYGG RILKGNIINPFKNWGMIFQEPDKQFTMATPRQEFIFTLENIHCPQEKAYTQINNAVKLTN IEELLDRPFINLSGGEKQRVALAIIMAMDPPLILLDEPFACCDMTTRHLLIKQLALLKQA GKTILITDHNLAGYQNICDDIFGFINEKFVNYDNEQKRALFDQVKPTLNKHFEMVTSSSN ADFSLKKFTLKNPAKFLINQVTIDIPKGKGILLTGENGSGKTSLFKAMTKLIDYEGNLLF EHKEIRKWSFRKYLSKVNQAFQNADDQFLMITVQEELELSQLKCTNSLFDEQMLQHYLSI LKLNDHLQQTVYSLSGGQKKRLQLLLMIMANPQVLLLDEPFTGLDCESITIFINLLKEYF IDKNKTIIIISHNLDQMDQLCQYHLQLQNQNLKFITN >gi|308165765|gb|AEHO01000010.1| GENE 18 16100 - 16786 363 228 aa, chain + ## HITS:1 COG:no KEGG:LJ0072 NR:ns ## KEGG: LJ0072 # Name: not_defined # Def: ABC transporter permease component # Organism: L.johnsonii # Pathway: ABC transporters [PATH:ljo02010] # 1 197 1 197 217 196 55.0 6e-49 MNPSLKLLLLCLLIIEITIIPNLIANLCLIVGSLILLMINHINYKKLCYFTIVPLSACIS VFFTIYFYAPGHNLTYALTLISRIYAFALSGAYFATSTDNYTLAKSLEQNAHLPSKFAYG SLAAFNLLPKIYEEVKRIRIAGQMRGLFLSFWSPKLYFKAIISAMTWADSLSQGMASHGY CEEKSRSVIIPILVTKKTGCYSFPSCYYFNQSYSYFIFDTIYDMGYQY >gi|308165765|gb|AEHO01000010.1| GENE 19 16758 - 17219 556 153 aa, chain - ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 153 10 159 159 180 63.0 8e-46 MCRKIKEKYFKDGIAEYLKRMDRYAKVEIVQVPDEKAPEKLSDAEMEKVKEIEGNRILSK IKDKEYVFVTAIKGCEYTSENFAQKISDVTTYGHSDITFVIGGSLGTSNAVNKRADELIS FGKFTMPHQLMRLVLIEQIYRAFMINIGSPYHK >gi|308165765|gb|AEHO01000010.1| GENE 20 17788 - 18960 1555 390 aa, chain - ## HITS:1 COG:SP2239 KEGG:ns NR:ns ## COG: SP2239 COG0265 # Protein_GI_number: 15902042 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Streptococcus pneumoniae TIGR4 # 9 389 13 384 393 261 44.0 1e-69 MKDKNNINQILKTILISFVSGMLGGLLVIYVVGYRPNNTSINKYESPKLVYDQSKHAGLM TGAFNMVKDSVVSVINLQKTRKNNLFTDIFGSKNDKDTLQTYSEGSGVIYYKNLNYAYIA TNNHVVADSDQLQVILSDGRKIAAQKVGTDPETDLAVLKVNSKYINQVAKFASSKNLVPG QPVIAVGSPLGSQYATSVTQGIISAKSRVVNVVNEQGQVTNEATVIQTDAAINPGNSGGP LVNEQGQVIGINSMKLSRSGDGTAIEGMGFAIPSDEVVNILNQLVKNGKIVRPKLGIRVL DVTDLTRKDKKRIHLPNNIQEGVAVFSVDSGSSAAKAGIKAKDVIVQIDNDKIDSVASLH SKLYKHKIGDKITIKVIRAGKYVTVKASLQ >gi|308165765|gb|AEHO01000010.1| GENE 21 18996 - 19793 808 265 aa, chain - ## HITS:1 COG:lin0319 KEGG:ns NR:ns ## COG: lin0319 COG1235 # Protein_GI_number: 16799396 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Listeria innocua # 1 256 15 267 276 231 47.0 8e-61 MRISILSSGSAGNTTLIESEHHKVLLDAGLSGKKIANLLAQRGVDIKDIDMVFLSHDHTD HSGGLGVLMRRYSQLNAYANEGTWKYLQESNKIGKIPKEQINIFAPETTKIFDDLEVHSF ATSHDAAEPQYYVFCSGGKRFACLTDTGYVSSSVKMQIEAADAYLMEFNYDDMMLRNGPY SWSLKQRILSDVGHLSNEQAVEALGDVVSRETKYIFLAHISQHNNDQLLVKKSALQLFEQ RDADVDSDVQFMTTAPMKPSKFIEL >gi|308165765|gb|AEHO01000010.1| GENE 22 19818 - 20537 460 239 aa, chain - ## HITS:1 COG:lin0318 KEGG:ns NR:ns ## COG: lin0318 COG4853 # Protein_GI_number: 16799395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 235 37 263 279 60 24.0 4e-09 MQNNDLKNEIIADNITLPKISDEQGEGYYLATKEGHSWISKAKEQLSNNCTIVSSKDTDA IIVNLNKPVDLGNNKNKTLSNIKSFVLNTRNVYQGGKYKYIDSTADKSTYIFAQKSKYGL VTENHSQLSIVVKNNHIVSYMQYYVAPLNTLREKQATISSQAAIDALYTYSELPNNSHVL WISFVYSKLITTRGSIIFIPTWLVAIQNSNNKFTIFKRVNAFSGNVMTIDNEEDKGYIK >gi|308165765|gb|AEHO01000010.1| GENE 23 20645 - 21979 936 444 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0066 NR:ns ## KEGG: LGAS_0066 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 444 33 474 474 451 53.0 1e-125 MKFSDKCQRIVLRISLSVMVLLSIILSGYIWGSDTRFSRMEQDSNQPTIKKNVGQKSLRE IYTPTQVFYYRDKQLYQAYDAKRNLTLEFSKFTKKLDGHKLNKIKSNSTFYRQLLHDEKY FQLTFPDQITISLFLPRANKYLDGEFNRIFVSTKDKKYLYLGDDRNNTLYRVYANVSFKN LYKHIQKAASQIPISLEKLKDGFCVSYNKDQQMAIYSYLTYKETDAYFVYKLLDSGNPTQ RNADDYIAYYNGIYQRLVAYKKTHNYEFVDYQQNKIPNTTTKMLTDSLFYVRKICLNEPD LRFFDASNNTISYQKFVEEYPVFLPEDNNVRAKVTFTRSCMQINFNSLDLRIPIPTNGAK QELQATDKIIDKLLQAGYKKSYLEKIIIGYKVCHDTNKTSNLIDLIPTYYIKINGRWHSL DAWLNNNYEVHIPASQQGGISNGF >gi|308165765|gb|AEHO01000010.1| GENE 24 21969 - 23750 1568 593 aa, chain - ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 1 591 19 610 610 459 42.0 1e-128 MLLLLATIEIVGAYFTRQLEQNSIESFETSIQIPNLISNQIATQLNKNNAKKANKQLNRI VSNYSNDAINDITVVDSKSVIRSVSNVNDQGTIGQRATNSDIKKVLTSGRQISKIINDNG KYMIQISPLNVGNGPNTIVGVIVVKAGMQSVFNNIHRVSFLFLTASLVAATLGAGVALVI ARAITKPIEEMKDQALRISNGDYSGHVKVYANDEMGELARAFNILSVRIERSQEVSDSER RRLDNVLMHMTDGVIATDRHGNITIINETALNFLDKTENEVKGEPITQLLGLKEVTIQDL MSTQQELIVTANANTHDELILHADFSLIQRVTGFVSGLICVLHDITEQQKNENEQRQFVS NVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDR GVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVID NIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRK QGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEKMSEEGDMWDEV >gi|308165765|gb|AEHO01000010.1| GENE 25 23848 - 24552 897 234 aa, chain - ## HITS:1 COG:BS_yycF KEGG:ns NR:ns ## COG: BS_yycF COG0745 # Protein_GI_number: 16081093 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 234 1 235 235 320 70.0 2e-87 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD GLEVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR EITQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREH LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVKSPTDE >gi|308165765|gb|AEHO01000010.1| GENE 26 24881 - 26218 319 445 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 12 437 8 420 447 127 26 2e-28 MAKRTSLLIGPDEKVSKFEATILGLQHVLAMDVYVPPIILAGILAMSSADAMGLLQATFL AAGVGTLLQTVIFMKIPVSQGPSFVPLTAAAGIVLANGGLHGKGIATLLGSSLIGSIFLI LLGLTGVFHKIINKFVPPVVGGTIITCVGLSLIPAALKDNIFAAPGNIFQNIELASITAV VLIFCIAMSLRIPKLEKIFKTSSIVVALLVGTSVAATMGRFNWSQVASAPLFSFPQRTIL HWGLDFSLTPIITFIIIYIILTAETTGTWFAMSAVTGCDISKKQWNNGIIGEGASCMCST LLGATPVTGYSTNAGIVSITGVASKHVFISAGIWFIILGFFSKLSAFLATVPAPVIGGVF AIITVTIMLNGLKVIRNVETEESDLYVIGIPIVLTMALLLVPKKVVAVTPQLLQYLLGSP IAVAAIVAVILKLIMPKYRGRLAKK >gi|308165765|gb|AEHO01000010.1| GENE 27 26242 - 27567 1319 441 aa, chain - ## HITS:1 COG:SPCC1672.03c KEGG:ns NR:ns ## COG: SPCC1672.03c COG0402 # Protein_GI_number: 19075374 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Schizosaccharomyces pombe # 50 437 57 444 527 275 35.0 1e-73 MIEGTICTPETVDKIGCYGNALVCVNQQGLIASVLFPNNSQYGEIKQTAISQGNYHQLAA DEYLLPGYVDLHVHAPQWPQAGLALDLPLADWLDHYTFPLESKCSDLNYSKTIYDSLVKE LLSQGTTTALMFGTIYNDSNIILAKACLEYGLRGFIGQVAMDNADQTPAYYRNQSAKDAI DATELFIKQLQKLSNDADRVVPVITPRFVPSCSDACLQGLGQLANKYNVPVQTHVSESSW EHGYVLDRFKATDTSVLDQFGLLTDRTILMHATHLTDDDMDLLAKREAALAHCPISNAYF GNGVMRVKEILAKQIKLGLGTDISGGYSSSIYHNIRQAVISSRMLEDGVDTTKQATTRGV ANSRINIATAFYMATVGGAEALHLNTGRIKEGYKADFQVVKSHPSVITLSDEQMIERILY QTQQSDIKQVYIDGNLVYCKD >gi|308165765|gb|AEHO01000010.1| GENE 28 27825 - 28112 323 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259500794|ref|ZP_05743696.1| ## NR: gi|259500794|ref|ZP_05743696.1| hypothetical protein HMPREF0520_0304 [Lactobacillus iners DSM 13335] hypothetical protein LineA_01940 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9210_0553 [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF0520_0304 [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9210_0553 [Lactobacillus iners SPIN 1401G] # 1 95 1 95 95 179 100.0 4e-44 MFGKKNKAEEKIIADICEILKDPNLKSEERDALIRVKNRLEKGEYTQRVLNNFLSQVRPL ALQSKLSPSVDKFYTDIINNAYKGISWAGMMFMKF >gi|308165765|gb|AEHO01000010.1| GENE 29 28323 - 28601 135 92 aa, chain - ## HITS:1 COG:no KEGG:Ldb0080 NR:ns ## KEGG: Ldb0080 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 14 92 12 90 94 84 58.0 1e-15 MYGEQNVVGTSYAKKIIKWILSLLLIIIVGITIITVYSAYYSFGTMIFGVHTESAIKDFW STEFLLGAVYIIVVITIAVVTGVTRLYKKHLK >gi|308165765|gb|AEHO01000010.1| GENE 30 28561 - 28665 76 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNLKKTLCVTLATVTLGTILSSVWGAECGWNELR >gi|308165765|gb|AEHO01000010.1| GENE 31 28856 - 29767 1012 303 aa, chain - ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 12 293 16 290 296 146 33.0 5e-35 MRNGTKIITLDNGYHLWTNTQGQGKIHLLALHGGPGGNHEYWEDAAVQLKKQGLDVQVTM YDQLGSLYSDQPDYSDPEIAKKYLTYEYFLDEVEEVRQKLDIDNFYLIGQSWGGLLVQEY AVKYGKHLKGAIISSMVDEIDDYVKAVNRRRQEVLPQTEIDFMHQCETNNDYDNDRYQAD VQILNINFVDRKQPSKLYHLHDLGGTAVYNVFQGDNEFVITGKLKDWHFRDQLKNIKVPT LLTFGENETMPLDTAKIMQKEIPNSRLVTTPNGGHHHMVDNPDVYYKHLADFIREVESGE FNK >gi|308165765|gb|AEHO01000010.1| GENE 32 29817 - 31169 1292 450 aa, chain - ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 431 1 431 449 310 42.0 4e-84 MIQKLNLRQYLVIASMIFALFFGAGNLIFPLHLGQLAGRNWLIATIGFLITGVLLPLFSV LAIAITKTDDVYGIAKPVSNLFATCFMILIHLTLGIMCASPRTASVSYSVGIAPLLPSKW HNIGLVIFTAIYFILTFIIAYNAGNILENLGKILNPIFLVLLFLVIIIALFKPLGNPADF SATASYAHSAGVNGFLEGYNTIDALAGIAFGVSVISAVKSMGVTEKNEVAKITAKSGFIA MTMIGIIYFLLILLGAMSLGKFKVSAEGGKAFSQIVTYYGGTLGQIVLASLVTLTCLTTA VGLVSSFAQDFHSHFGGLKYRKWLAITCFASFMTANLGLELIIKWTFAILMFLYPIAMVL IILALFSPLFKGDHVVYKVSVVLTIIPAFMDLIAHLPAPISETSFCKMIIDIRLKYFPLS DIGLSWVFPTLLGIIIATLVHVWRRKNNKI >gi|308165765|gb|AEHO01000010.1| GENE 33 31261 - 32712 1156 483 aa, chain - ## HITS:1 COG:ECs2097 KEGG:ns NR:ns ## COG: ECs2097 COG0531 # Protein_GI_number: 15831351 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 11 480 4 472 511 283 36.0 4e-76 MDNTAVEDNELSQNIKYNRLTGLKLFAMTSSMVISVSELVPFGKTGPTAIFYLLLAGLIW FIPITKMAGEMASIDGWNKGGIFTWVKGTLGEKTGWTALFYQWIHITIGMNVMMYIIIGS VSIILNKPYLNTTPFIRFLLMMIILWSITLVEMVGMKKIGRIAEWCFGLGIAMPVILLIL CFFVYLLEGKNVYFHINFDNVFPHKFDGNSLVVFVPFILAFCGGEASAPHVKYLEKPKQY SKVMLGLACVAICFDLLGSMAIGMTVPKELHTNNVTGFVETFGHMLNSINLPGDLLMKII GALLACGIIGQLGNWLAGPSQGMFEAAKEGYLPAFFTKSTKRDVPMRLIVLQSLIVTLGA IAVTFTSGTNANFAFDVSMAATTVQYLMMYIILLISYIVLKLRHAKLPRTYYMTTSPIKG IGIALVALCITLIAFVLTFIPTRETPEHLRNMYVLIMLIMCAIVTILPLIVYHFRHLYGK KRL >gi|308165765|gb|AEHO01000010.1| GENE 34 32830 - 33336 582 168 aa, chain - ## HITS:1 COG:SP1845 KEGG:ns NR:ns ## COG: SP1845 COG0708 # Protein_GI_number: 15901674 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pneumoniae TIGR4 # 1 168 108 275 275 242 64.0 2e-64 MDQEGRIITLEFDTFYLTQVYTPNSGNELKRLADREIWDTKYQEYLAKLDQNKPVIASGD YNVAHQEIDLKHPETNHHNAGFTDEERKGFSKLLSLGFIDTFRYINGDITDVYSWWSQRI RTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDRKDHCPILLKIDL >gi|308165765|gb|AEHO01000010.1| GENE 35 33366 - 33656 309 96 aa, chain - ## HITS:1 COG:SP1845 KEGG:ns NR:ns ## COG: SP1845 COG0708 # Protein_GI_number: 15901674 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pneumoniae TIGR4 # 1 91 1 91 275 122 65.0 2e-28 MLFISWNIDSLNAALTGDSDRANETRSVLNKIKKANPDVVAIQETKLRANGPTKKHCDIL ADIFEDYQYVWRSSQEPARKSYAGTMFLYKKITIHK >gi|308165765|gb|AEHO01000010.1| GENE 36 33676 - 34368 471 230 aa, chain - ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 3 217 4 217 235 118 33.0 8e-27 MIYKQIIFDIDDTIIDFANTEYVALNSLFKFHGWNITPEIRKNYHAYNQGLWRLHEQGKL TYEELSEICFRDFIKREYDIDVNGKQIMAEYRHYFGNTHKLIPGAKEALQYFKNQGYYLA ALSNGETFMQKKRLKLANVAQYFDLIITSQEAQASKPNPAIFDYFFSRSKVSVNQSLLFG DGLSSDILGATNYGLDCVWFNHCHRKNLLRLTPLLEVDTYSDFIKYCKNH >gi|308165765|gb|AEHO01000010.1| GENE 37 34374 - 34895 418 173 aa, chain - ## HITS:1 COG:no KEGG:LAF_0389 NR:ns ## KEGG: LAF_0389 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 1 163 2 164 171 163 50.0 2e-39 MKTTESELVKDIINFRLPRYDELPVMGLYLEQVANYLNEYLHAISETPITSSMISNYVKH KIISKPIKKLYDRDQIASLIFIALAKNILQLNDLKKGLVIQQGSYSTKVAYDYFCVELEN NLQYVFGLKDENKMEDNAPSPEKIMLHNMILTISYKIYLTKYFELYDITKNKG >gi|308165765|gb|AEHO01000010.1| GENE 38 35019 - 35855 847 278 aa, chain + ## HITS:1 COG:SP0742 KEGG:ns NR:ns ## COG: SP0742 COG1307 # Protein_GI_number: 15900637 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 277 1 279 281 202 35.0 4e-52 MIKKIITDSGANILSSTILGQKHINVPLSIIIDNNIWLDDNNINIDNFIQAIINTKQKTS TACPSIATWLQAFAGADEIYVVTITSGLSATYDSAIQAANLYKEKYPNVKIEIFDSLSAG PQMRMIAERIAQDLNKNLTFDEVIEDVKQYQQTLQMVFILKDMKNLANNGRVNPTIAKLS KLVNLNIIGTVTDAGTFALISKARGMKKCYPKLLQAMIDQGYNGGKVEIDHVNNLSEAQL VASTITSTFPNADISFSLCTALCTFYAENGGILVSFEK >gi|308165765|gb|AEHO01000010.1| GENE 39 36108 - 37121 973 337 aa, chain + ## HITS:1 COG:SPy0425 KEGG:ns NR:ns ## COG: SPy0425 COG0208 # Protein_GI_number: 15674552 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 337 1 337 337 566 78.0 1e-161 MSESYYDHSQAPVHFAYHDNGLNMRSINWNKIDDDKDLEVWNRVTQNFWLPEKIPVSNDL PSWNSLSKDWQQLITRTFTGLTLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHA RSYGTIFSTLCNSDQIDEAHNWVINNEALQARAKALIPYYTGNDPLKSKVAAAMMPGFLL YGGFYLPFYLSSRNKLPNTADIIRLILRDKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFV FALLYKLIDLEKAYLRELYKGFDIAEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIAPEV LAQLSARADENHDFFSGNGSSYVMGVTEETTDDDWEF >gi|308165765|gb|AEHO01000010.1| GENE 40 37293 - 37547 269 84 aa, chain + ## HITS:1 COG:MYPU_5400 KEGG:ns NR:ns ## COG: MYPU_5400 COG1780 # Protein_GI_number: 15829011 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Mycoplasma pulmonis # 2 78 75 150 151 114 74.0 4e-26 MHGAVTKQVIQFLNDKDNRSYCRGVISSGNTNFGDQFAVAGPIISKKLHVPFLYQFELLG TMEDVENVLNILKTERWKQNNDEK >gi|308165765|gb|AEHO01000010.1| GENE 41 37537 - 39714 1830 725 aa, chain + ## HITS:1 COG:SPy0427 KEGG:ns NR:ns ## COG: SPy0427 COG0209 # Protein_GI_number: 15674554 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 2 725 3 726 726 1045 70.0 0 MKNNETYISLNALTEFKDENGHFNFEADKKAVKAYIDEKINPNTKKFKSFRERLNFLIDN DYYDKDLLAKYNIEFIEKLTKKAYDQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYEDR VVMNALFLADGDEDFATSLLMDIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMES ISRSITTSLQLSKRGGGVALCLTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLG QRQGAGAVYLHAHHPEILKFLDTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALF SPYDIMREYGKPMSDISITKEYDNLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFE DTVNDRNPNKKEGRIVMSNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKTMD DSEHFEHLVANSIRALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYN SPEAVDFTDMFFYATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTA TIKDLLNKYHFYIPSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVA PVETRKEGMVGRIYVPAYKIDNNNYKYYQKGAYEVGPAAIIDIVAAAQKHVDQAISLTLF MTDKATTRDLNKAYIYAFKKKCATIYYVRVRQEVLEGSENLAADEVIKTDKFKCTGSKEC QVCML >gi|308165765|gb|AEHO01000010.1| GENE 42 39803 - 41695 1963 630 aa, chain - ## HITS:1 COG:lin2942 KEGG:ns NR:ns ## COG: lin2942 COG0445 # Protein_GI_number: 16802001 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Listeria innocua # 1 629 1 627 629 824 65.0 0 MKTYNSNEYDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGT VVREVDALGGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNL TLRQGMADELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSL PSIKLAENLEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLK DQLSCYMTYTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFL EPEGWKTREIYVGDFSTSMPEEVQLKMLHSVVGLEKAEMMRPGYAIEYDVIEPWQLKHTL ETKNIRHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFVLGRDEAYIGVLIDDL VTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLRKKEAIATTM KNIKSITIHPTEEVQNYLKDIKQDALNGAVNGADFLKRPRVTFDAIEKLTGKKLAADRYV KEQVEIALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESI AQAERISGVNPADLAVLTAYIQQGRIAKIK >gi|308165765|gb|AEHO01000010.1| GENE 43 41707 - 43092 1281 461 aa, chain - ## HITS:1 COG:SPy1071 KEGG:ns NR:ns ## COG: SPy1071 COG0486 # Protein_GI_number: 15675063 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 2 461 1 458 458 466 56.0 1e-131 MVQVLTQYDTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGANLNKVASHTIHYGHII DYANKDVVDEVLATVMLAPKTFTRENTVEVSCHGGLLVTEKILQLILDNGARMATPGEFT KRAFINGRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHEEV NIDYPEYDMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSL LNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRA ITESDLVLLLINSSEELTEEDQKLLKLTQDKKRIVILNKADQVAKITKKDIQKITDSPIV TISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLRKAKQSLIEAIEAINDN MPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK >gi|308165765|gb|AEHO01000010.1| GENE 44 43192 - 44067 690 291 aa, chain - ## HITS:1 COG:lin2986 KEGG:ns NR:ns ## COG: lin2986 COG0706 # Protein_GI_number: 16802044 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Listeria innocua # 20 291 11 287 287 216 42.0 3e-56 MSDFLSKKNLKKIIVIATILLISLTITGCVSTSSNGSVPPLSNNSGSFWDRYILYYISSF ILWLATILHNAYGWSIVVFTIIVRVVLLPLNAISIKSMAKQQSLQPEMEALRKKYSDRDA ETRRKLQEETSKLYKESGVNPYLGCLPMLIQMPIMIALWQAILRTPELQNGRFLWMDLGH PDPYMVMPILAAIFTFIASYIGQLSQAKSSNNAMTKGMTYVMPVFIGVMACSLQSALSLY WVISNLFQAIQTFFLQNPIKYYRELKLKQLQEKERKAKYRKIYKKFGRKIK >gi|308165765|gb|AEHO01000010.1| GENE 45 44069 - 44440 254 123 aa, chain - ## HITS:1 COG:L131443 KEGG:ns NR:ns ## COG: L131443 COG0594 # Protein_GI_number: 15672110 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Lactococcus lactis # 1 113 3 112 117 102 53.0 1e-22 MRKSYRVKSEKDFQLVFETGQSMANKAFVLYQLDKVNQPHFRVGISVGKKVGHNAVLRNR IKRCIRAAITEDKHMIKKDVDFLVIARPYVKDLDMKCIKANLEHVMKLSNLLISDIPSQV EEN >gi|308165765|gb|AEHO01000010.1| GENE 46 44489 - 44629 230 46 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227521920|ref|ZP_03951969.1| ribosomal protein L34 [Lactobacillus gasseri JV-V03] # 1 46 1 46 46 93 97 4e-18 MTTKRTYQPKKRHRSRVHGFMKRMATANGRKVLARRRKKGRKVLSA >gi|308165765|gb|AEHO01000010.1| GENE 47 45150 - 46469 1311 439 aa, chain + ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 437 15 447 449 411 50.0 1e-114 MKKRYSEVAYNAWFKNTKPLSFDKNSKQMTISVESPVSKGYWEKNLASQLIQEAYAYTDM EIIPIFKIAGDTNSERFVVHKTPKKQEPVIENNHNEFAKDLQLNSKYTFDTFVQGEGNKL AAGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQMLTEKANAKIVYIQSETFVND FINSIKNKTQDLFREKYRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSD RLPNEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRKKAEADGLGIDDNTLDYVASQV DTNIRELEGALVKVQAHATIEREDINLNLAKEALADLKLVQKTRGLEISKIQEVVANYFQ TSTTELKGKKRVKQIVVPRQIAMYLSRKLTDSSLPKIGQEFGGKDHTTVMHAYEKIERSL KTDSEIKSAVYDLKAMLNH >gi|308165765|gb|AEHO01000010.1| GENE 48 46641 - 47771 1131 376 aa, chain + ## HITS:1 COG:SA0002 KEGG:ns NR:ns ## COG: SA0002 COG0592 # Protein_GI_number: 15925707 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Staphylococcus aureus N315 # 1 376 2 377 377 307 45.0 3e-83 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS DDLHIESTGSIVLPARFFSEIIKKLPGKDFSFEVKDSFQTKIMSENSDFTINGLDADNYP KLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEINAIATDSHRL SRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANINFYTRL LEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQVIKLS GDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRVSITDSIVIKFTKPLRPFVVVPK DSDEKFIQLITPVRTF >gi|308165765|gb|AEHO01000010.1| GENE 49 47973 - 48218 157 81 aa, chain + ## HITS:1 COG:BH0003 KEGG:ns NR:ns ## COG: BH0003 COG2501 # Protein_GI_number: 15612566 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 17 71 7 61 73 65 50.0 3e-11 MSRVLCKWGGFIKDFVINGEFITLAQFLKEESIISSGGQAKWYLNENPVMLNGVLENRRG KKIHPGDQIVINKNLYNFIMG >gi|308165765|gb|AEHO01000010.1| GENE 50 48222 - 48947 445 241 aa, chain + ## HITS:1 COG:BH0004 KEGG:ns NR:ns ## COG: BH0004 COG1195 # Protein_GI_number: 15612567 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Bacillus halodurans # 1 228 1 227 371 220 50.0 2e-57 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL IKFNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED LSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV LTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEKDSVEK I >gi|308165765|gb|AEHO01000010.1| GENE 51 48991 - 49344 350 117 aa, chain + ## HITS:1 COG:BS_recF KEGG:ns NR:ns ## COG: BS_recF COG1195 # Protein_GI_number: 16077072 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Bacillus subtilis # 4 113 259 368 370 122 53.0 2e-28 MRLGTTLVGPHRDDLQVFINKKSAQEYASQGQQRSIVLSIKLAEIDLMHQILNEYPILLL DDVMSELDNIRQKNLLNYINGKTQTFITTTDINSISQEMIKIPRIFRIVSGTVSEEK >gi|308165765|gb|AEHO01000010.1| GENE 52 49345 - 50067 762 240 aa, chain + ## HITS:1 COG:BS_gyrB KEGG:ns NR:ns ## COG: BS_gyrB COG0187 # Protein_GI_number: 16077074 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Bacillus subtilis # 15 232 2 217 638 256 60.0 2e-68 MADNKNIQDQALNFEKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTSIQGLHHLVWEIID NSIDEKLAGFATKIEITVNEDGSVTVEDDGRGIPVDIQKKTGRSALETVFTVLHAGGKFG GGGYKVSGGLHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQH GTIVRFYPDPDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKIQQKKIFIILKVV >gi|308165765|gb|AEHO01000010.1| GENE 53 50238 - 51305 1040 355 aa, chain + ## HITS:1 COG:lin0006 KEGG:ns NR:ns ## COG: lin0006 COG0187 # Protein_GI_number: 16799085 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 2 354 293 645 646 514 73.0 1e-146 MHESGFKTALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTK LGNSDARAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLE IANLPGKLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD RILANQEIRTIFTALGTGFGADFDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKP MIKAGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQ LWETTMNPENRRLDRVDPEDAEDAEEAFEMLMGNEVGPRREFIEQNAKYVENLDA >gi|308165765|gb|AEHO01000010.1| GENE 54 51315 - 53762 2579 815 aa, chain + ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 6 815 2 812 822 1002 60.0 0 MDNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVF PDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPA AMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGM TTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKG NIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQK GLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQE NIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDR QAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRF GDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIRGMGV QNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLEKGEKVQ AVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDELSNVLLTDGSQ NILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYVVGSSIVDDHSEVLVISEKGY GKRTLASEYPIKSRGCMGVKTANVTEKNGPLVGVTVVDGSEDLMLITDAGVIIRLEVDGV SQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSEI >gi|308165765|gb|AEHO01000010.1| GENE 55 53940 - 54236 466 98 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518091|ref|NP_964021.1| 30S ribosomal protein S6 [Lactobacillus johnsonii NCC 533] # 1 98 1 98 98 184 90 2e-45 MAKTKYEITYIIKPDIDEDSKKALIERFDKVVTDNGAQELESKDWGKRHFAYEIEKYREG TYHILTFVAENAAAVDEFGRLSRIDGQILRSMTVKLDK >gi|308165765|gb|AEHO01000010.1| GENE 56 54272 - 54727 623 151 aa, chain + ## HITS:1 COG:BH4049 KEGG:ns NR:ns ## COG: BH4049 COG0629 # Protein_GI_number: 15616611 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Bacillus halodurans # 1 151 1 168 168 174 57.0 5e-44 MINNVVLVGRLTRDPDLRTTESGISVATFTLAVDRQFSNSQGEREADFINCVVWRKAAEN LANFTSKGSLIGVQGRIQTRSYDNKEGQRVYVTEVVVDSFSFLESRRSRENKPVASNNFS TTNNVPTEEPKQDPFADTGKTIEISEDDLPF >gi|308165765|gb|AEHO01000010.1| GENE 57 54756 - 54992 353 78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518093|ref|NP_964023.1| 30S ribosomal protein S18 [Lactobacillus johnsonii NCC 533] # 1 78 1 78 78 140 91 2e-32 MVQQRRTTHRRRKVDFISANHIDYIDYKDVDLLKRFISERGKILPRRVTGTSAKNQRMLT VAIKRARVMGLLPFVSED >gi|308165765|gb|AEHO01000010.1| GENE 58 55160 - 57175 2248 671 aa, chain + ## HITS:1 COG:lin0045 KEGG:ns NR:ns ## COG: lin0045 COG3887 # Protein_GI_number: 16799124 # Func_class: T Signal transduction mechanisms # Function: Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain # Organism: Listeria innocua # 38 667 9 652 657 560 45.0 1e-159 MKDFLRKLELPAFVKDSRLTASLIIVLSLSFVGFIVGLLISPLYGLAMLLLFILTCTFSI YGIYVLAINTNNYASNLSYRIKRGEQEAMIKMPLGILLYDEDQQIQWVNPYLQLFLKNND MIGTSLKNLDEQLYKSINDAIRDKDTNNRVIRVGKHKCEIVVQNDLGVVYILDITKYAAI ERRYQDQRLSIGLIFIDNYDELSQAMGDQNLTDMSSYIQNALNEYAKRFNAYLKRIDEDH YLLLSHMIDLHKMEADRFSILDKVRKESSRCNTPLTLSVGIAFGSESLNDISEQAQSNLD LALGRGGDQVVVRQIGKDAHFYGGKSNPMEKRTRVRARVVSQALQELFKDADHVFVQGHK SPDLDAIGSAIGIVKIARIHGVKANVILDLSELNYDVERLIKKMQEAGVDQEIFISPDEA VQIATDNSLLVLTDHSKYSITYNQSIYDKMKNRLVVIDHHRRGEEFPENPMLVYIEPYAS STCELVTEMIEYQPQGGDGVLNYLEATAMLAGITVDSKEFSLRTGTRTFDAASYLRSIGA DSQVVSYLLKESIDNYLKRSYLVSTVDMVHSNMAILSGNDSEIYDAIIIAQAADTALSLE GVSASFAIARRSNSMIGISARSTGKINVQVIMEKLGGGGHLSNAATQLDNISVSEAKERL LQAIDSYLQEN >gi|308165765|gb|AEHO01000010.1| GENE 59 57191 - 57646 603 151 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518096|ref|NP_964026.1| 50S ribosomal protein L9 [Lactobacillus johnsonii NCC 533] # 1 150 1 150 151 236 79 2e-61 MKVIFISDVKGKGKKGQIKEVPTGYAQNFLLKKGLAKEATSSNLNIQKRLEKAEHDAYEA EKAEAEQIKLKLEDDKTIVKFQSKAGNDSRLFGSISSKKIVEGLEEQFGIVIDKRKLMLP EPIKALGYTNVAVKLFKGIEAKIRVHITEKK >gi|308165765|gb|AEHO01000010.1| GENE 60 57652 - 59025 1327 457 aa, chain + ## HITS:1 COG:L0286 KEGG:ns NR:ns ## COG: L0286 COG0305 # Protein_GI_number: 15672728 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Lactococcus lactis # 10 447 11 450 455 454 58.0 1e-127 MANIISQQIPHDSEAEKAVLGAIFLDNSAIVDAYDILKPDDFYERANKLVFQAMINISER DEGIDALTLQDELKRNNQLDDIGGIVYVSELAMSTPTAVHITYYANIVKRKAILRNLIFT SQNIIQNAIKDSDDITDILDDAERSILNVSQDNSQNGFKTIKDILSETIDNINNIPADGN MVTGLATGFVELDKMTTGFHDDEMIVFAARPGVGKTAFALNVAQHVGLYDKKTVAIFSLE MGAEQLVQRMLASQGLINSQHLRTGQLDSDEWNKLFVASGLLEATDIYIDDTPGIKISEI RGKSRKLAKEKGNLGLIVIDYLQLIEGGKSESRQQEVSFISRQLKKLAKELHVPVIALSQ LSRSVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRDDKSTDIKSEKDNGEVEII IEKNRSGSRGTVKLMFSKPYNRFSNLDFAHNNVPPEK >gi|308165765|gb|AEHO01000010.1| GENE 61 58960 - 60225 1125 421 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0015 NR:ns ## KEGG: LGAS_0015 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 382 1 378 380 397 49.0 1e-109 MANILNYMRWRGDLPFSINKFNSIDAAFFATFVYLPFPTINKKILLSDLASEYINNQDML KKVNGYEKEQLQLIPFCKRYGDLEILDWTNTIKTNPPVQFSAATFRLNKNTILVAFRGTD GSMIGIKEDIDLSFHPKTSGLTVAKHYLQRIATQFNNDNIYIVGHSKGGMFSQYAAIFAP QFIQDRIIKVYSLDGPGLMHNYYSPSKYKEVLPKFITYIPEGSIFGLMLDHPEHVLVVKS NANMLKQHNIIQWEVARNGFVLASNGLTNASRILRHSFISVNTKIPINDRESLWMAIFSA LESQNVVDFSQLRDSKLRSAINLSQAYMSLSPQLKIVANEVISIIATSAKNHINIPFINK AKLLKPLSNNSNKGPIVDDSYDQTMQKKIDSHESIFLYNTLFFRRNVVMCKIQIRKSIIW F >gi|308165765|gb|AEHO01000010.1| GENE 62 60232 - 60918 573 228 aa, chain - ## HITS:1 COG:CAC3658 KEGG:ns NR:ns ## COG: CAC3658 COG1285 # Protein_GI_number: 15896891 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Clostridium acetobutylicum # 1 223 1 227 229 169 40.0 4e-42 MQNFPFFLDCFFRILIAALCGAAIGYERATLRKSAGIRTHIVVAVASALFMIVSKYGFFD ILKDTGIGLDPSRIAAQIVTGISFIGAGTILVRKAQVSGLTTAAGVWATAAIGTAVGAGM YTIGIISTCFLFIVQIVFHDDTFINFLIVHVRFNVQIEVDNVPNILNELKQILANNDVEQ VSLKLINASKDRLLINVDGIIKSRKDENDIIITLEKNNYIHRVSCARG >gi|308165765|gb|AEHO01000010.1| GENE 63 61304 - 62692 1427 462 aa, chain + ## HITS:1 COG:L0046 KEGG:ns NR:ns ## COG: L0046 COG0362 # Protein_GI_number: 15672604 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Lactococcus lactis # 4 461 6 471 472 481 50.0 1e-135 MQQFGVIGLSVMGKNLALNIRNHGFSVAGFSIDKPEVDALAKYEDDKLKPTYSWEEFINS LEKPRKMLIMIRAGKPVDMTLEKLTELLEPGDIVIDGGNSNFNDTNRRFKKLEEKGIHFI GMGVSGGEEGALNGPALMPGGDKEAYDKVSPILESIAAKTEEGVPCVAYIGPEASGHYVK MVHNGMEYGIMQIICEVYDVLRTVGNCTNEQMSEIFAKWDEGQLHSYLTEITSKVLKQRD DLADGYIVDKILNVASYKGTGNWMLEDAIKLGCPITVIAEAVLARFASKATLRDGCMPEF KGKVDLNQLITKLANAYYLASAVSYAQGFQQLSMAAKEYGWNLHYPAIAQTWEAGCIIRS SMLKDIENAFNQDADLPNLFKDKYFNDIANKYTTDLEEIVKLAVEAGIPIPTLGAAYSYL KTIFNPKLPQNLLQGQRDYFGAHTYYRNDRDGVYHMEWYTEK >gi|308165765|gb|AEHO01000010.1| GENE 64 62760 - 64310 1278 516 aa, chain + ## HITS:1 COG:L113400 KEGG:ns NR:ns ## COG: L113400 COG0038 # Protein_GI_number: 15673646 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Lactococcus lactis # 13 497 16 493 512 274 35.0 4e-73 MISKKVKISAYKVLMQALLVGLLVGIVVGIFRFGIEKMSALWLKLFELTHDNPYWFVVVV VGLILTGVIAGYFVHQQAHVGGSGIPEVKLQLQGKLDIPWWPILWRKLLGGIMVISTGIF LGPEGPSLQLGSTIGQGVGEKFKQSKTNSRILLATGAASGLAAAFGAPLSGVMFVLEEVF HNFSSRVWMNALAGAIAADFVVSNVFGQKAVLAIPYKHTFPVNLYWQLVILGVILGLLGQ LYKHSLFSFKKIYTHITWIPRWLHGLIPLLMVIPIAYYLPAITGPGHRLIFSLSGFITKS GWNVVLLLISFYILRIVFSIFSYDSGLPSGIFLPILAMGAVIGASYGMLMVNLHLMPAHL VVNLIIFSMAGYFAVIIRAPFTAIILITEMVGSLLHLMPLAVVAFVGLIIDNLMDGKPIY GMLAAHMQLNDMTQDESGHEDQITVPVYEGSSMIDKSISQISWPKNTLVKLIKRGSRDII PNGKTKIVAGDALILVIDEGQRATVYDEMTKLQGFI >gi|308165765|gb|AEHO01000010.1| GENE 65 64470 - 65558 647 362 aa, chain - ## HITS:1 COG:YPO2459 KEGG:ns NR:ns ## COG: YPO2459 COG0477 # Protein_GI_number: 16122680 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 1 361 77 432 452 142 29.0 9e-34 MGRLADKIGRHHMLMINMYVLSFLSIIQLFTSNLLFTFIIRIGIGLMIAIDYTVGNALLI EWMPIQEGAKKQSSILLYWTLGFVISYPIGLIIHGFGPLTWRIILASVAFFSLIAALYRT SFNLPGSPSWLASRGNFVDANKIIQYQLGKKWGLPKHLERYKPIKSLSWTELFNKHYLRR TIVGGGFYACQSFAYFGISIFLPLILKSMNLQNNYLPGIIYNIGIFVGVSIGVVIFNHIG RKIFLTSTFLISAISIGLLALSLHANAWIKVVLFLIFAMSLSSGLVFDYTYTTELFDVKI RATGVGTCIAISRIGAFLGTFLLPIINQNYGTSTAMFICFIVLVFGALICGILAIETTAL SK >gi|308165765|gb|AEHO01000010.1| GENE 66 65521 - 65715 129 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWCLPILSAKRPINILPPRPIRVPDPIKPFHMLVIFRYLLAASIASPLIPKLYPHAICPK QMAI >gi|308165765|gb|AEHO01000010.1| GENE 67 65791 - 67101 1238 436 aa, chain - ## HITS:1 COG:SA2050 KEGG:ns NR:ns ## COG: SA2050 COG2252 # Protein_GI_number: 15927833 # Func_class: R General function prediction only # Function: Permeases # Organism: Staphylococcus aureus N315 # 4 435 1 443 444 359 47.0 7e-99 MQILDNFFHLKKSKTSIKQEFIAALTTFVSLSYILFANPNILHDAGIDKGAAFTVTAIAT AIGCFLMGIIANYPIALAPTLGSGAFFAYNVCIGMKIPWATALAAVLLASILFILITILK LREMVVDAIPQDLKYAISSGIGLFIAFIGLQSSKLIVNSNSTLVKLGSFNNPDTWVSMFG IILTVILVASRIPGSIFIGMLLTALFGIIIRQIPLPNSIVSSAPSIAPTFGKAILELKNI NTTQLFMVVITFLLVTFFDTAGTLIGMTQQAGMVDKQGKIPRIGKAFLSDSLAMVEGAIL GTAPLGTSVESSAGIAMGGRTGLTSILVGFLFIISLVFSPLLTVIPSTVTSPALIIVGVL MAANLKNIHWHEFEIAFPAFLIVIGMPLTYSISDGLALGMIAYPITMIAAKRYKEIPKMM YILLIIFIAFFIITNL >gi|308165765|gb|AEHO01000010.1| GENE 68 67446 - 68543 1360 365 aa, chain + ## HITS:1 COG:lin1425 KEGG:ns NR:ns ## COG: lin1425 COG1744 # Protein_GI_number: 16800493 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Listeria innocua # 14 362 12 357 357 278 44.0 8e-75 MKKSFKSVLKAGLILTTVGLLLSACAGKKQGGASSDSKTTKHNIALITDVAGVDDHSFNQ SAWTGFKQYGKEHNLGRGNNGYQYFQSNGASDFVPNIEQAVNANFETIFGVGYSLKDAIA QSAKKYPKKNFVIIDDWIKNQKNVVSANFKSQDASYLAGVVAAYTTKTNVVGFIGGVHGH IVDLFDAGFTKGVQDTAKKLHKNIKILNQYAGSFVSSDKGRAIAQTMYAKKADIIFHAAG KTGDGIFQAAKSINQTKPANKKVWVIGVDSDQSSLGEYVAKGGQKSNFTLTSVITGVNVA VKDIADRAYRKQFPGGKSLNYGLSNDGVAIVHNTDIPNKVWIASQKARTNILKGRIKVPI HPKNK >gi|308165765|gb|AEHO01000010.1| GENE 69 68678 - 69766 1328 362 aa, chain + ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 6 358 3 350 350 280 47.0 3e-75 MHLNLKKSITLGLVVTAMGILSAGCSHNTQNGAGNSDKKHSIALITDFNGVDDHSYNEIA WKGFTDYGKEHHLKRGAGGYQYFESNGASDFVPNLNQAASAGYQTIYGVGFTLTDSIKAA SKKNPKRNFVIVDSVITGRKNVVSTIFKSNDASYLAGLAAAGTTKTGKVGFVGGVRSSVI DLFEAGFRKGVADGAKALKKKVTVNVQYVGDFTSTDKAKSIAKSMYADNADIVYQAAGQA GNGVFQEAKDYNKTKLAKQKVWVIGVDIDQEKLGNYVSKDGKKENFTLTSVLKGLDVVCK DIADKAYHNKFPGGKTLVYGLDSNGVSLTRGHIDAKTWSSIKKARQAIIDGKIKVPVKPA KK >gi|308165765|gb|AEHO01000010.1| GENE 70 69834 - 70976 1075 380 aa, chain + ## HITS:1 COG:SPy1227 KEGG:ns NR:ns ## COG: SPy1227 COG3845 # Protein_GI_number: 15675191 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 7 380 4 377 510 424 60.0 1e-118 MDNTVDNVIEMRHIVKQFGNFRANDDINLTLKKGEILALLGENGAGKSTLMNILSGLLQP TSGDIYVNGKKVIIKDPNTAKRLKIGMVHQHFMLAESFSVLENIILGNEITKGCFIDFKK EKEKIIELSKQYGLAVNLSAKISQTTVSQQQRIEILKVLYRGADILIFDEPTAVLTPQEI TEFIKVIKGLVHEGKSIIFITHKLKEIKEACDRVTVIRRGKSIGTIDTSATTDQQLADMM VGRKVNLNVTKPSSNIGDTILDVENLVVKDSRGVQIVKKLSLQVHRGEILGLAGIDGNGQ DELVEALTGLRHVESGCIRIKGHDSTNQQVRKITQCGVAHVPADRQKYGLILSMSLADNL ALQTYYEKPLSKHGFLQKKK >gi|308165765|gb|AEHO01000010.1| GENE 71 70973 - 71353 510 126 aa, chain + ## HITS:1 COG:SPy1227 KEGG:ns NR:ns ## COG: SPy1227 COG3845 # Protein_GI_number: 15675191 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 5 124 382 501 510 161 68.0 2e-40 MIKKAERLVKGFDIRAANLMIPAGDLSGGNQQKAIIARELDRNADLIIVFQPTRGLDVGA IEYIHEQLLKQREAGKAVLLVSYELDEILKLSDRIAVIHNGQISGTVLPADTNERELGLL MTGAVR >gi|308165765|gb|AEHO01000010.1| GENE 72 71362 - 72474 1252 370 aa, chain + ## HITS:1 COG:L166804 KEGG:ns NR:ns ## COG: L166804 COG4603 # Protein_GI_number: 15673311 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Lactococcus lactis # 6 360 4 359 364 309 49.0 7e-84 MIGKKKINKALISLIAILMGFIVGALIMLVWSYNPITAYTYMFQGALGTPLELGETLREM TPLVFTAIGFAVADKAGFFNIGLPGQAQAGWVTSVWIVLANQHLPKIILIPLALISGAIA GAVVAGIAGVLRAYFGTNEVITTIMLNYIVLYVCQYLTQQIMPEKLRINIDTTKTISDNG SLRWEWLTNMFGGSRISSGIFLAIIGLIAFYIIMNKTTIGFEIKAVGLNPHASTYAGISA KKNIIVSMLLSGAYAGLGGVILGLGTYQNYFTQTGNVDIGFDGLSVALLGGNTAVGIFLA ALLFSILKIGGLGMQTGAGIPYEIVSIVIAAIIFFVAIHYIIEYLLNYKKVMKHSCTSDK TQGLEVGGSK >gi|308165765|gb|AEHO01000010.1| GENE 73 72474 - 73430 874 318 aa, chain + ## HITS:1 COG:SPy1225 KEGG:ns NR:ns ## COG: SPy1225 COG1079 # Protein_GI_number: 15675189 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 318 1 318 318 394 65.0 1e-110 MDIVSMLSLIVSSTLVFSAPLMYSAIGGTFSEHGGIVNIGLEGIMTMGAFSSIVFNLSFY KQFGIWTPWLGALIGGIVGLIFSLLHACATINFHADHIISGTVLNLMAPAFSVFLVKAIY SKGQTENITENFGYFTFPVLGQIPIVGKIFFRNTSAAAWLAIVIAVISWEIMFKTRFGLR LRACGENPQAADTMGINVYLLRYDGVLLSGFLAGFGGAVFAQSISGNFSVSTIVGQGFMA LAAMIFGKWNPLGAMGASLFFGFAQSLSIIGKQLPMIEHLPSVYLQCTPYLMTIIVLVLF FGKSVAPKADGINYIKSK >gi|308165765|gb|AEHO01000010.1| GENE 74 73459 - 74415 956 318 aa, chain - ## HITS:1 COG:L0194 KEGG:ns NR:ns ## COG: L0194 COG0276 # Protein_GI_number: 15673549 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Lactococcus lactis # 2 308 5 308 314 239 38.0 4e-63 MQGLLLVNLGTPTSPTKNDIEKFILDFMGDPNVVNMPQWMWKPLLKHVILPIHIKKSIIS YQKIWSQNGSPLRFYTEKITQQVQALLPDWQVKMAMTYGDPSINTTIQEMKNNGCDHLVL LPLYPQYANCTVKTIIATAKQTCSNLDLPLTIIKHFCTNNEYLEILVKDIQHYWDLDKYD HLYISYHGIPQSAIKKGDIYLKDCTAQTQAMCQMLNIPSEKITMVFQSKCGLMPWLKPYL NKTLIQAAKDGIKKVLIVTPSFVTDCSETIAEDAIDNKNLFIKYGGENLTVVPPMNDSPA FAKFIANLATNVNKTKKG >gi|308165765|gb|AEHO01000010.1| GENE 75 74590 - 76011 1499 473 aa, chain - ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 2 459 25 478 492 410 50.0 1e-114 MWERFSYYGMRAILIYYIYYAVNKGGLGMSQYNAAAIMSIYGSLVFISTLLGGWISDRIW GTYKTTFIGGILIMMGHICLSTPLGVAALYLSIAFIVLGSGFLNPSASATVGNLYDKNDQ RRDAGFSLYVFGINFGAMIAPIVVPWASSGFGFHVFGNVTNFHAGFVLAAIGMLLGLIQY YFASNKYLPAKSFKPEDPMTKQEKKQVLIKFSYGIISLLIVLGAMALLHALNINNIINLI TIIAVVLPIIYFAIIFKSNKVSHSERRKVIAYIPLFLAAIIFWGIEESGAVVLALFAENR TVLHVGSWYFQAANFQLLNPLFIMILTPIFVALWNSWKKQPTAPTKFAVGLGFAGLSYLV MAIPGALFGTSGRVSPLWLVLSWFIVEIGEMLISPIGLSVTTQLSPKVFKTQMMSLWYLS DAVAQAINAQIIRFYTPKTEVNYFIAVGIVSIVFGILLLFGVKKISALMGDSK >gi|308165765|gb|AEHO01000010.1| GENE 76 76393 - 76962 566 189 aa, chain + ## HITS:1 COG:L14408 KEGG:ns NR:ns ## COG: L14408 COG0363 # Protein_GI_number: 15673555 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Lactococcus lactis # 1 189 46 234 235 236 60.0 2e-62 MVESDVDFTNITSINLDEYYGLDPQNSQSYHYFMKKHLFEKKPFYKTYIPNGKAKDINQE IADYDKIISDNPIDIQILGIGGNGHIAFNEPGTPFDSTTHEVTLASSTIKANSRFFDNQD DVPKRAICMGIKSIMSAKQIILMAYGAAKQDAVKAMVEGPVTETVPASVLQKHPNVVVIV DRDAAAKLS >gi|308165765|gb|AEHO01000010.1| GENE 77 77083 - 77727 611 214 aa, chain + ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 211 1 212 217 220 54.0 2e-57 MTVIVLSGPIGAGKSSLTKILADELHGQAFYENVDGNPILPLFYKDMSKYTFLLNVYLMN HRLEQINCANKMKNSVIDHSIYEDSVFFKMNVDNGIADSTEFKIYRDLVNNMMEDVPGSV HKKPDLLIYIHASLDTMLKHIKQRGRIFEQLSTDPKLEEYYACLNSHYDPWFEQYDASDK LMIDGDKYDFVNDVSARKIVVNQVMEKLRNLGKL >gi|308165765|gb|AEHO01000010.1| GENE 78 77740 - 78405 691 221 aa, chain + ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 211 1 212 217 243 58.0 2e-64 MAVIVLSGPIGAGKSSLTSILSKYLATDPFYESVDDNPVLPLFYENPKKYAFLLQVYFLN TRFKSIKKALSADNNVLDRSIYEDALFFQMNADIGRATKEEVTTYYELLDGMMAELKAMP KRQPDLLIHIHVSYETMIKRIQKRGRKYEQLSYDPTLEDYYKRLLTYYQPWYDQYNYSPK MVIDGDKYDFMNSDDDCDKVLKMIVAKLKEVGKLPQDWTKL >gi|308165765|gb|AEHO01000010.1| GENE 79 78427 - 79737 1450 436 aa, chain + ## HITS:1 COG:BS_yebB KEGG:ns NR:ns ## COG: BS_yebB COG2252 # Protein_GI_number: 16077704 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus subtilis # 4 433 1 439 440 384 52.0 1e-106 MNIIKKYFSLDEAHTSIKIEFLAGLTTFISMSYILFVNPSVLGASGMDKGAVFTATALAS ALGTAIMGIVANYPIGEAPALGINAFFAYTVCIGMHVKWQTALASVFVASVLFILITLLK LREKIINSIPADLKFAISSGIGLFIAFLGLQNSGMIVGNKATLVSIGSLENPLVWITIFG LLLTVVLMILNIPGSIFIGMVFAAIFGIVIGQIAVPTKFISFAPSLQPIFGQAIYHIGDI NTVQMVVVVLTFLLVTFFDTAGTLIGLAQQAGFIKNNKMPRVGKALAADSTAMMAGSVLG TSPVGAFVESSSGIAVGGRTGLTAVFISIFFLISMLFSPLLSIFTAQVTAPALIIVGVLM AQNTAHIHWDRLEIAVPAFLILLGMPLTYSISDGISLGMITYPICMIAAKKYKEITPMMW VLFFIFIIFLWILNIK >gi|308165765|gb|AEHO01000010.1| GENE 80 79755 - 80402 437 215 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1838 NR:ns ## KEGG: LGAS_1838 # Name: not_defined # Def: metal-dependent membrane protease # Organism: L.gasseri # Pathway: not_defined # 1 214 1 212 215 162 47.0 1e-38 MKKIISNLIHALYIFFAFFIYTLLQLLYFFRIPKTWKPFYNILAVAISLVGILLLAYLYY KGLKHQKLSFNNKPHWDIKRILFSLGMFILLIVCQVVMIKFFYANHISANQKELIHMQQR VGSLFKVLVILVAPFCEEIIFRGLFFNYFFTQDNIYSKTFGIIINGFLFAWLHDPTFSIF IYLYWVMGMILAFTYLQTKDLRYSILVHMLNNMLG >gi|308165765|gb|AEHO01000010.1| GENE 81 80450 - 81289 746 279 aa, chain - ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 6 274 113 376 379 176 45.0 3e-44 MKPLEALFIGIVFAATSVSISVEVLKDAKQLNSRAGTAILGAAVVDDILAVVVLSLFTTF SHEGGRSGLTNNFFINIVIEIGYFIVVWLIYKFIAPYFMRIAERISVSYSVVIASLILSL TMAWVADFVGLSAVVGAFFGGLAIRQTPQYEEVAESVSAIGYSIFIPVFFAEIGLVMTFS SMIQDAIFIILMTILALLSKFWAGKYSSEYFGFTPLEGNIVGAGMISRGEVALIVAQIGI AHHLFPRDIYSSLILVIIVTTVISPFILNYYIKKTPQLS >gi|308165765|gb|AEHO01000010.1| GENE 82 81366 - 81611 295 81 aa, chain - ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 81 1 81 379 63 46.0 1e-10 MHFLGELILILLITTILGQLFTRLEMPAVIGQLLSGIILGPAILSLVHPNQTITLFSEFG VILLMFLAGLESDIDLLKKVF >gi|308165765|gb|AEHO01000010.1| GENE 83 81797 - 82288 378 163 aa, chain - ## HITS:1 COG:lin1008 KEGG:ns NR:ns ## COG: lin1008 COG0517 # Protein_GI_number: 16800077 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 144 1 143 150 85 40.0 5e-17 MFSPAIKNLLDKKSGTFFIPASKIAFVQDDAPLYHAFLILTKVRYAKIPVLNKEKCVVGL LSLAMITNKMLLTDHISTNPLTILKVKDVMQTTFSKINFTQTTLETQLHLLIDNSFLPVV NDTGIFQGILTRREWIKAFNFVVHNFENYYNVIPIKNQNKNNN >gi|308165765|gb|AEHO01000010.1| GENE 84 82442 - 83038 609 198 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1737 NR:ns ## KEGG: FI9785_1737 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 197 1 198 383 201 51.0 1e-50 MKIFKKVFRSCFIVLSLSLVVIISFIAYHSYLEHKSVKINVYSRPALIKAADGNSISPSY NSLYAYKKRLSERYPNIYQAAFDAPSQSHIGSNVTIPGLVVTRAYDYTKRKITEADEMTP QGITIADKYILVSAYDAKNRHASVIYVINSHTQKYVKTIQVPGRPHLGGITYDPVAHNIW ITGRQNGQAALMSFSLKN >gi|308165765|gb|AEHO01000010.1| GENE 85 82978 - 83589 366 203 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1737 NR:ns ## KEGG: FI9785_1737 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 17 202 197 382 383 276 70.0 6e-73 MDHWSPKWSGCFDVLFIKKLKRYDYKKKHKSVQYDHIVTLPTVERASCVTYYDNQLFICL FNKYCKGQIVSYPISRTKPYKGTIISDQIKAVTGEVSWALGSGSAGLDPQIQGLAFYQNR IILSQSYGSQDSKLYFYSTSALNNLDNSKADKVVNLPPYLEQIHAVDGQLLMLFESGSKA YARDNMMVMDRILSVNINALLGS >gi|308165765|gb|AEHO01000010.1| GENE 86 83606 - 83902 274 98 aa, chain + ## HITS:1 COG:no KEGG:LJ1785 NR:ns ## KEGG: LJ1785 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 2 93 1 92 96 65 38.0 6e-10 MILPEVRRWIRISGWLGIFVAYIILQMYNYTHQPMFIVSLVIVILYSAYMLATSAEPSWY VTSIMLRRIIICICLVSIIQGVFLCIAYYKLKKSRTIK >gi|308165765|gb|AEHO01000010.1| GENE 87 83965 - 84120 73 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259500728|ref|ZP_05743630.1| ## NR: gi|259500728|ref|ZP_05743630.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_02255 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] D-Ala-teichoic acid biosynthesis protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0580 [Lactobacillus iners UPII 143-D] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] D-Ala-teichoic acid biosynthesis protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0580 [Lactobacillus iners UPII 143-D] # 1 51 1 51 51 69 100.0 6e-11 MIKINDKNKTCLKNISIFVLKTLFYFAILLVLVYLYSYSGIGAAKFIYKDF >gi|308165765|gb|AEHO01000010.1| GENE 88 84139 - 85656 1839 505 aa, chain + ## HITS:1 COG:SPy1312 KEGG:ns NR:ns ## COG: SPy1312 COG1020 # Protein_GI_number: 15675261 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pyogenes M1 GAS # 1 504 1 511 512 461 45.0 1e-129 MIKDIIQKIDGIALEDPHRLAYDYLGNTKTYGELKLRSDQYATKINSLGLASKEPIMIWG GQTFDVIAAFLGCLKSGHAYIPIASYSNSDRLFMIQDVSKATTVIAVDPLPVAVEGVNVI VPSDIDKIDSVKINEADFVAGDDNFYILFTSGTTGKPKGVQISYNNVVSFLNWEFADFKL PDRPKFLAQVTYSFDVSVMSIYPALLSGGSIVVMPHEITSNLGQLFKILPNLKFNIWVST PSFVEMCFLDPTFNQEHHPDITHFLLCGEEFGHRTAQMLHNKFSNSHIFNTYGPTETTVA ITQVEITDEILKKYNRLPIGKVKEDTVITIDTTKGQKESQGEIVVTGPTVSKGYMNDPER TKKVFFHQDGQKYPSYRVGDLGFFEDGMLFYRGRIDFQIKFNGFRIELEEINFYLSKNPL VRYGVVAPKYNKDNKVQQLVAVVELAEGVKEKYSEKEITQQIRESLEKEVMPYMIPQRFV YKDKLPISQNGKVNIKQVIKEVNNA >gi|308165765|gb|AEHO01000010.1| GENE 89 85653 - 86870 748 405 aa, chain + ## HITS:1 COG:SPy1311 KEGG:ns NR:ns ## COG: SPy1311 COG1696 # Protein_GI_number: 15675260 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pyogenes M1 GAS # 4 404 11 413 418 350 47.0 3e-96 MINLQPYTNPRYFIILFIALLPLIIGLYNGKRYKNYEAFISFLFLFLMFSGSEWIQGVQI IGYVIFQFLITFLYQKYLKKGKNSTKVFVCAVIASILPLALVKIAPLVPTDVSSLIGFVG ISYLTFKTVQVIMELRDKTIKSVDPVTYARFLLFFPTISSGPIDRYRRFQKDYDTAPTRD QYLDYLEKGTFYIFQGFLYKFIIGYVFGTLWLPQLAKTALFIGKANGGLRLSWALVGYMY CYSMYLFFDFAGYSLFAVGTSYFMGINTPVNFNKPFISKNIKDFWNRWHMTLSFWFRDFI FMRFTFFAMKKRLIRNRIRLSQIAYLLNFLIMGFWHGITWYYIVYGIFHAVAIIINDIWL RFKKKHSDHIPHNKFTEAFAIFLTINIVCFGFLIFSGFLDTLWFK >gi|308165765|gb|AEHO01000010.1| GENE 90 86916 - 87155 394 79 aa, chain + ## HITS:1 COG:SP2174 KEGG:ns NR:ns ## COG: SP2174 COG0236 # Protein_GI_number: 15901984 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 78 1 78 79 76 53.0 1e-14 MDIKQIVLDILNELTGEDLSSRMDDNLFDTGLLDSMATVQLLLELQEQCDVTAPVSEFNR DEWNTVNKIIAKVESLKNE >gi|308165765|gb|AEHO01000010.1| GENE 91 87148 - 89433 2338 761 aa, chain + ## HITS:1 COG:SPy1309 KEGG:ns NR:ns ## COG: SPy1309 COG3966 # Protein_GI_number: 15675258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Streptococcus pyogenes M1 GAS # 6 420 4 416 416 323 42.0 1e-87 MNSKSRLLHIFGPLICAFVLLELVLLYPWTTNIKSEQLLYKASVSCSKNIFKGQEIKQAA FSKEYVPFYGSSELLRMDCCHPSVLAYKYKRDYKPFLLGGPGSQSLTQFFNMQETVQQLQ NKKAVYIISPQWFTKQGQNPNAFGLYFSQLQLVNWLLSAKDSIATRYVARRLLSMPKVAI NSNVITNYALMMIASGKKLTPEQLLWFRIRRRMLLNEDNFFTSMFCDDNVDHIKKVSEKL PDKYDLNKLHEVATLEGKLNTNNNSFGIANQFYTKRLNNANLQRLKGAQKTFNYTKSPEY SDLQLVLSEFAKEHVNVLFVIPPVNKKWSDYTGLSSKMYQKTVAKIKQQLISQGFYNIAD LSRDGGKPYFMEDTIHLGWNGWLEVDKYVRPLMKQCNIPISYNLKNYYFSKTWANKVNIK HTTKQLTPKKQAQLHIKQALDNAKVRGNVLVIKNNKPFLNYQNSYADYDMKKETLPNSSY LINSTQKVMTAVMLMKQVEKGRLSLSDKLSKFYPQVPFADKISISQLLSMTSGLATRPRA ILGTSTFKSNQAGIRYDIKKNIIFSPKLYNKRYYDSFNYVLISGILEKITHKTYEQLFTA TYIKPLALKHTAFAWSKPAKMLEIGAVNSYQSLDNVSNPLVKVNIDINQLHGLVGAGNIY MSNADLYKTIRYILQGKIISNQSIKELFNKVNNKNDGSNYMGGFYNFVSFKSCNGYGYGF SNFVRISKDGSNAIIVQTNMPIKRFFALRATMNKLILGLSN >gi|308165765|gb|AEHO01000010.1| GENE 92 89485 - 91926 1541 813 aa, chain - ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 252 813 332 896 896 441 41.0 1e-123 MNKKVLWRYSIHSITNSITRFIAITLLLGLGTFALLGLKSTGPDMRVIGRQFFVKQNLAD LIITSNYGIDNIDKKLLQNFKDTAKLECGYQQDVITKKNNLAIRIFSKPKNISIPKVVTG KMPSKANEIALSFLLQNKFHIGQTITFKHSATIKSHSFKIVGFIKSPEYLDRSFVGQTNI GNGRLDGFATITKGNFQSPVYHVARLKLKQVKHIDPYNKKYNQFVYSDQQKLYKLLNANL SHKDMQANLFKNTLGLPYYTVQSRDNLESYTQYISNSKKIDILSNVFPVFLFAVAGLVTF STMTRFIDSDRINIGTLKGLGYSNLDIALQFVIFSTLASSLGIFIGAYTGFNYLPNIIMK AYLANSILNDQLINLISVPLLIEAIIICVLSTIVASMWALWGALREEPKALLLPKQPKLG SSILLEKIPPLWNRLSFSLKITARNVFRFKSRMFMTILGIAGCCALLVMGLGIRDSLKEI ADTQYGDIIKYDLIALHNHQIPQNNSHYQSIINDNYVKRHTYINYKVCHTKQPHKFIDSN IQVIAFADKNVLKKYFDLRNRKNKERYLLNSSGAIINEKLAKIMHVKVGDKLTFKDNYNH TKKVTISHICEMYLGHYLFMNRKTYQKVFQTSYTSNADMISLKSHKDLNKFNEKLLKTNN LQTILSNQTSFKTLKNFTGNLTEVIIILIIMAIMLALIVIYNLTNINMLERIREIATLKV LGYFSIEATMYIYRETIILAIFGIFGGWFLGFLLHKFIIVQLPPSFAMFDPNIYLDNLLI SAIIPLVVTTILAFIIHFKIKKQDMLQALQSVE >gi|308165765|gb|AEHO01000010.1| GENE 93 91936 - 92439 399 167 aa, chain - ## HITS:1 COG:lin1186 KEGG:ns NR:ns ## COG: lin1186 COG1136 # Protein_GI_number: 16800255 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Listeria innocua # 11 167 77 233 233 228 68.0 4e-60 MAKIYLITHNKKLTKYRRYDVGFVFQFYNLIPNLTAKENVELAAELVANAMPADKALKLV GLENRMNNFPSQLSGGEQQRVAIARAIAKNPKLLLCDEPTGALDYKTGKKILNLLQTMCH NSGVTTIIVTHNSAIAPIADKIIHIQDGQVKKIDINSDPTSIDDIEW >gi|308165765|gb|AEHO01000010.1| GENE 94 92408 - 92638 94 76 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 71 1 76 318 40 28 2e-13 MTYIDIKNCTKIFKNGMEKIYANNNINFVINRGELVIILGSSGAGKSTLLNILGGMENCS SGDIIIDGKNISHYSQ >gi|308165765|gb|AEHO01000010.1| GENE 95 92834 - 94249 1119 471 aa, chain + ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 1 463 1 460 463 356 43.0 7e-98 MSNFFKKVSIDTYLKSDARLVRSLNARDLIALGIGAVIGTGIFILPGHEAADHSGPAVAV AFFLAAVVSGIVGMAYAEFSSAMPVAGSAYSFGSIIYGEIVGWILGWSLLLEYFLAVSAE ATGFASYFNDNILNSFGFNLPKSLQAGPLQGGIINLSAVLITLIVAFIIYQGANLSKRVE NIAVIIKVSIIILFIIIGIFYIKADNYIPFYPKKFQTAPFGIGGISTAAATAFFAFIGFD ALASNSAETIKPEKNVVRGILGTVLISVVLYVAFSLVLTGMVNYKKLGVDDPAAYALKSV GLHSFNKIITLGALIGIFTAMLTMLLGGSRLLYALGRDHLLPPAMGKVDKFREVPDNAII IATIVAAFFAGLVPLFELAALINAGTLLAFTLISFGIIPLRKRKDIVNKGFKMPLYPVLP VLAGIFSLYFILMLPILTKIMVTLWLIVGLLVYIFYGVKHSKLQNQESYKK Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:43:36 2011 Seq name: gi|308165754|gb|AEHO01000011.1| Lactobacillus iners LactinV 09V1-c contig00026, whole genome shotgun sequence Length of sequence - 10436 bp Number of predicted genes - 11, with homology - 10 Number of transcription units - 6, operones - 1 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 406 - 453 9.3 1 1 Tu 1 . - CDS 603 - 899 174 ## gi|309804925|ref|ZP_07698986.1| conserved domain protein - Prom 1143 - 1202 8.6 2 2 Op 1 35/0.000 - CDS 1265 - 2287 176 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 3 2 Op 2 . - CDS 2202 - 2876 534 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 4 2 Op 3 . - CDS 2908 - 3678 593 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 5 2 Op 4 . - CDS 3696 - 4454 457 ## Lbuc_0158 hypothetical protein 6 2 Op 5 3/0.000 - CDS 4444 - 5334 1101 ## COG1131 ABC-type multidrug transport system, ATPase component 7 2 Op 6 . - CDS 5336 - 8005 1866 ## COG0515 Serine/threonine protein kinase - Prom 8047 - 8106 6.8 - Term 8042 - 8099 3.2 8 3 Tu 1 . - CDS 8111 - 8239 63 ## - Prom 8317 - 8376 8.2 + Prom 8606 - 8665 5.7 9 4 Tu 1 . + CDS 8699 - 8902 223 ## gi|259501188|ref|ZP_05744090.1| conserved hypothetical protein + Prom 8957 - 9016 4.1 10 5 Tu 1 . + CDS 9115 - 9465 365 ## LGG_02944 integrase + Term 9659 - 9700 2.2 11 6 Tu 1 . - CDS 9702 - 10217 361 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 - Prom 10297 - 10356 9.0 Predicted protein(s) >gi|308165754|gb|AEHO01000011.1| GENE 1 603 - 899 174 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804925|ref|ZP_07698986.1| ## NR: gi|309804925|ref|ZP_07698986.1| conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners LactinV 03V1-b] conserved domain protein [Lactobacillus iners LEAF 2052A-d] conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners LactinV 03V1-b] conserved domain protein [Lactobacillus iners LEAF 2052A-d] # 1 98 1 98 98 182 100.0 1e-44 MHSKITELELLYNKMFKSAFVYSQIQEIVQNDKTALDINGQILHFTDYVTIKEDIDQLLS GRINFVDIGHTCDLHNSCYSQQCILKRLKVLMPKFKLT >gi|308165754|gb|AEHO01000011.1| GENE 2 1265 - 2287 176 340 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 124 334 1 217 223 72 28 1e-12 MYYVLILFIKKFIKKVLKNLKFLEQKNYDLMKTQAVAGLLSSLCAGVSFIVPFVVGCFVI INTNTLSFSALMGIFLLNDRVVGPLTSVASDFNEIKTTDELRKKLFIFENRVSVASDLHK TTPVNDLQSLKFNNVTYEINDKITLTLNKTLVAPFKVLICGESGSGKTTLLRLIKGDILP ANGDIEAKDIYGKDMIIFQDVAYIFQTPYIFDTTLLDNLTLFQSKEFTQEKIIRVLKKVS LYDELGGKNSLKYMCGTMGKNLSGGQIQRLEIARALLRDKKVLLVDEATANLDKNNSKKI RDLLFNTPVPVIEVAHHYNLNDKRYTDKFELKNGKLIPIG >gi|308165754|gb|AEHO01000011.1| GENE 3 2202 - 2876 534 224 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 5 215 4 214 535 143 41.0 2e-34 MIKLIHFESKGKIVLAFIFMLIASFDGVVLSYIVSEAGTLSSSSNNTSVLNFGIKSLIGL SLVYIGKFLYTISVASIIKDLNIYLKQNFFWNKFSDKKNIPNSSGIISNLSNDFKLIENK YFQGIFSLTSDILLCIVSLIYMLKFNIYISLLFLSMSFLPMIVPFAFSKKLKLAGNNWSK ANEIYINHIKDYLQGFNVLRTYSIYKEIYQKSLKKSKILRAKKL >gi|308165754|gb|AEHO01000011.1| GENE 4 2908 - 3678 593 256 aa, chain - ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 255 1 255 256 60 27.0 2e-09 MYTELKQELYKLGHRKLPWWIISFLILFMIFMGLAMGRDYSKLLVMTCYDSSQAIMLILV VVGSTIFSMEFQNKTILMVMYRASNKGAVYLAKFITIFIYNVFLHLVAMLVTIFFNTVPI LVNPVAWSTTYKYQQSLFINMIATTGVDIVTSTLIISLICLTSCLINSDTIVIVVNALII FMGSTLSVNLLNANIGPIKLIRWNPLNMLNLTTQYYNYATYHLTSMLSSTQLLIGTLCYT AIFTILGYLIFRRKSF >gi|308165754|gb|AEHO01000011.1| GENE 5 3696 - 4454 457 252 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0158 NR:ns ## KEGG: Lbuc_0158 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 43 252 49 258 258 90 27.0 6e-17 MKIDLLHEFYKFAHRRIPLYGILILLGLMLYTIGTSYKISPYLLTQGFGAGQWAIIIIIA LSVDMISMEYRDHTMATLMYKTSNKSALYTAKFIVLVIYSILLLACGVLFSFIIKGILVG SRYYWLENYHGHSLINALLLNVGGTLIYLLFIVAFSLVLILLIKNNATVIMIGLAIGFLG ADLSSLAMVAFPSLKAILAWNPLNMINIISQLSNNDMQKITYLTNSQLIIANLIYAALFF GIGLSIFKKRAI >gi|308165754|gb|AEHO01000011.1| GENE 6 4444 - 5334 1101 296 aa, chain - ## HITS:1 COG:SA2302 KEGG:ns NR:ns ## COG: SA2302 COG1131 # Protein_GI_number: 15928093 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 212 3 211 231 188 49.0 9e-48 MLDVKNINIYYGHKEIIRDASFTISSGEIVGLIGPNGAGKTTIMKTLLGLTHFTGKLSFN GQPITLKDHAALQTVGALIENPAIYPFLTGRDNLKLYSQDSTDTAKLITRLGMDGYIDRK AKDYSVGMKQKLGIALALLNNPKLVILDEPMNGLDIEATISIRKLIHEYAAQGTAFLISS HVLSELQKVMTSVIIINHGKITMNSPMSRFTQEISSESKLQTTAMKQTTELLQQAKISFN QKGDYLIVNQENIATIQQLLFENKIWINYLAPAGLTFEQKIVNVLQTKQGGDNNEN >gi|308165754|gb|AEHO01000011.1| GENE 7 5336 - 8005 1866 889 aa, chain - ## HITS:1 COG:SP1344 KEGG:ns NR:ns ## COG: SP1344 COG0515 # Protein_GI_number: 15901198 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Streptococcus pneumoniae TIGR4 # 10 867 3 867 869 195 24.0 4e-49 MINGTDYVKYIKNKSIPFYSHSNNKKDDSITFHSASYNKSNWNSIITDDWHYMMHNSNDL PDQGWKIHISANLEDAQEVLIKVSELLITTKVSFKFIPDFLTLELSYSKNADRIEAGKFI TIYPKNDTEFCELLDPLKRITDQFKEGPYILNDRPWKQSNVYYRYGGFRAMTAIKDGRTI YVIRTPDGDFIEDKRVPYFSKPDFVNEPIYIQENNTYPNPETFAKLDSLNIKEALHFSNA GGVYVGKYKGHDVVIKEGRPFIGIDQKQCDGFTRIKAEYKTLMKLKYVAGVVDPIGYEKI WKHNYLIEEKIPGETLGEYMAVNFPFPNNSDVTLYKHNALQIIHKLVNLVKEIHQKGFAI VDFQPENIMIDTDKRHGTINVRLIDFESAGPLNNRYNPNLVTQDYTSFQSKTFKDADWYT LNRIARSIFLPVESTMFYSPELEKRQNKNIKFKFGKDVVDYLTQVQNLCAKHTTIYRQPA FYDGYVETPQESINSNNLAQNIAALEKGITQNINYDLKGLIYGDIKQYNDSLSWYAINYG TMGTIMALQRNNSNVLRTSAFRNWLNKVEERIDSITKQDSSFNVGLFDGLGGIALILYEL GHKDMAEELIHRCNSTHNALNISMYSGLTGLGLVNLVLYLSTNKNNYMRVAKQIADTIIS RYHSGEFDNQEEYEGRLGLIKGWAGPVIFLWKLGTLINDLHYRSEAIIILDKIVATGIIN TEQGSALSDKSKGMVRILPYLDTGFAGLSLVLMDINLDAPNIIRKKYSNIWETIQKDVGS FCTYQCCLFSGTAGLAMYSNTVKLNFNKTNSFDIYLQALNNFMLSTNRKNMLVPGQFGVK CSMDYETGAAGVLIALLNIENQINWLPLLANNPLNIFNSKPTTQLKVMK >gi|308165754|gb|AEHO01000011.1| GENE 8 8111 - 8239 63 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKNPVVNLQKTPASKISSSVRMRNSGFSFNCRGQSTLSINCR >gi|308165754|gb|AEHO01000011.1| GENE 9 8699 - 8902 223 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259501188|ref|ZP_05744090.1| ## NR: gi|259501188|ref|ZP_05744090.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] integrase [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners DSM 13335] # 1 62 1 57 255 73 61.0 5e-12 MHFTQFLNEFEGINVYYSTVYQLLSQAEVDSPLKFKRLLVETALRQNIGLSTLKLLKPKP SKPLISA >gi|308165754|gb|AEHO01000011.1| GENE 10 9115 - 9465 365 116 aa, chain + ## HITS:1 COG:no KEGG:LGG_02944 NR:ns ## KEGG: LGG_02944 # Name: tnp # Def: integrase # Organism: L.rhamnosus # Pathway: not_defined # 4 114 254 415 478 70 30.0 2e-11 MDVLTRLGYACKQLGTEIVITSVSQVKGMVERANQTFQGRLKQEFRIAQINDIETANDYL LNTFVPDFNENNNLVCFNNHTKCLVIEAFDKQRFITVDDEIYFMREIPKNVKYSPD >gi|308165754|gb|AEHO01000011.1| GENE 11 9702 - 10217 361 171 aa, chain - ## HITS:1 COG:RSc0334 KEGG:ns NR:ns ## COG: RSc0334 COG2110 # Protein_GI_number: 17545053 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Ralstonia solanacearum # 1 169 6 170 171 181 53.0 5e-46 MNLRVVKEDITRLKVDAIVNAANKTLLGGGGVDGAIHQAAGPELKEVCRKLNGCMTGEAK ITEAFKLPAKYIIHTVGPIYPFHTISENKKLLSSCYINSLNIAKAYKLKSIAFSCISTGV YKYPKKIAAMTAIETCRKWIIDENYDIEIIFCVFDSDNFNIYNDIINASFN Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:43:59 2011 Seq name: gi|308165752|gb|AEHO01000012.1| Lactobacillus iners LactinV 09V1-c contig00051, whole genome shotgun sequence Length of sequence - 1578 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 452 - 481 -0.3 1 1 Tu 1 . - CDS 622 - 1335 517 ## COG1451 Predicted metal-dependent hydrolase - Prom 1399 - 1458 5.9 Predicted protein(s) >gi|308165752|gb|AEHO01000012.1| GENE 1 622 - 1335 517 237 aa, chain - ## HITS:1 COG:jhp1425 KEGG:ns NR:ns ## COG: jhp1425 COG1451 # Protein_GI_number: 15612490 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Helicobacter pylori J99 # 17 234 16 233 235 148 36.0 8e-36 MISRTAVIGGIEVKITKKSTLKNLYIRINPPKGNVTISAPLHYPDDDISLFVLKKLPEIN AVRARMRSQLIQTKREFISGESHYLWGKPYRLDVAVGTKKYSIEKMPNKILFSVPKGAST ENKEKVFNEWYRSELKRVMQSLIPIVEKRMNLSANEYRIKNMRTRWGTCNIDKKRIWINL QLAKKPIECLEYVLVHEMVHLLEANHTHKFHALVGKYYPTWKDAKKTLEKMPLDYLK Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:44:01 2011 Seq name: gi|308165745|gb|AEHO01000013.1| Lactobacillus iners LactinV 09V1-c contig00048, whole genome shotgun sequence Length of sequence - 8398 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 2, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 137 - 241 79 ## gi|312875526|ref|ZP_07735528.1| hypothetical protein HMPREF9216_1349 - Prom 291 - 350 4.5 2 2 Op 1 . - CDS 455 - 1351 725 ## HMPREF0424_0870 hypothetical protein 3 2 Op 2 . - CDS 1353 - 4787 2645 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 4 2 Op 3 . - CDS 4791 - 5921 967 ## Fluta_2797 restriction modification system DNA specificity domain-containing protein 5 2 Op 4 . - CDS 5908 - 7515 1381 ## COG0286 Type I restriction-modification system methyltransferase subunit 6 2 Op 5 . - CDS 7515 - 7727 311 ## Swol_1464 hypothetical protein - Prom 7747 - 7806 6.1 Predicted protein(s) >gi|308165745|gb|AEHO01000013.1| GENE 1 137 - 241 79 34 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312875526|ref|ZP_07735528.1| ## NR: gi|312875526|ref|ZP_07735528.1| hypothetical protein HMPREF9216_1349 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9216_1349 [Lactobacillus iners LEAF 2053A-b] # 1 34 1 34 540 72 100.0 1e-11 MSNKKIIKQLSIPIALAGAMFCTVLQQTQKVNAA >gi|308165745|gb|AEHO01000013.1| GENE 2 455 - 1351 725 298 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0870 NR:ns ## KEGG: HMPREF0424_0870 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 1 298 1 298 298 490 89.0 1e-137 MGSIVLELQNEIVSSNCDVVNILRKAHLIASKLKLADFDQWIQHELNGYPDQESCPEYRK VCGSLKAFNHYHGWISTLMQDNELEKMICERKLTNSISEVISLCQSSENVLISEFSGEQF AFFNKMFNSPLSMKYALHIPTTAVKDIEEKVKNTILEWTLKLESEGIVGENMVFSEAEKE SAVNMPQTVNNYYGNTSVINSPSDNVQIVSGSENTVTFSYDKVKDVVDAVEKSISESDLS KEDIETATELLADIKLKIEEEKKPNILKSALVGLKDFLINTGANVAAGLIQAKIKGLF >gi|308165745|gb|AEHO01000013.1| GENE 3 1353 - 4787 2645 1144 aa, chain - ## HITS:1 COG:XF2739 KEGG:ns NR:ns ## COG: XF2739 COG0610 # Protein_GI_number: 15839328 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 13 1111 20 1058 1058 385 28.0 1e-106 MAKLKEYNGHYCESEYEYAFIGFLEAEGWDYIAGNNINRISKRDVLIADDFKKFIAKTNP ELTEDEVTQIFDNVRLVGAESDFATLHKVYGWMVDGIQFTLQDGLAKMIPLIDFENPDKN IFRVVNQFTVEYTNNGQKENRRPDVLLFVNGMPLCVIELKNPADVHATVYDAWKQINIRY WRDIPHLLHYCPLACISDGVKTRLGTVRTPYEHFYAWRRVNDDDKVSTLPFAETETMIKG VYSPARFLEIFRDYIYFQDSDYDSDEVEIVCRYPQFFAAKLLKQSIVNSIVTRNGKGGTY FGATGCGKTYTMAFLARQLALRCSDIPQVGSPTIILIVDREELQKQGAKLFTKSKEFLNL GEVSVVQSRAQLRQELGARQSGGFYICTIQKFCDREDDKIGLINDRQNIICFSDEAHRTQ LEHSKKIQFSKDADENMKAMLSKPYAKVLKEAFPHATFVGFTGTPIAETYQTFGDEIDRY TMDQAVADGITVSIKYHPRIAKVLLDKNKVKEIEDYYKKCADDGATYDDIETSKRAMSSM EVILAEPSRLERLATDIHDHYISSCDSDPDRIQKAMIVCSSRKIAYSLLLKFKDKYPEWF KEKKKPDGVVATDEELKELKPMPFIAMVSSVGSNDETEMYNYLGGVKNDKRSEDLDAAFK QDKSNFHIVIVVDMWITGFDVPSLTYLYNDKPLKKHLLIQTISRVNRKYPGKDYGMVIDY IGIRDNMREAMKIYGGDISVAPTSDDVEQATSVFREELEILKTLFTDYDLAPFLNPECDP VERYKLLSKAAEYVFKSIQTLQTEENGKINQVSFRTYFLKNVKRMRSAFDICQPSGNLGK EESALAQCFMAIAGFVRKMSGTSDVDVDTMNRAVSKMVEEALKYNKVENVLESGEEEDIF SPEYFEKLSNVKMPATKLELLIKMLRKQIQEYGKVNQLAAKTFQEMLEKTIDEYHERRKH LTDEEIGVTQEVASENIIKAATEQALVILRQMNENRESFRRIGLTFEEKAFYDILIALRD QYKFEYGIDKEVNGVVVNDKCKALAKKVKEIIDTESSFVDWLNNQNVRDQLKLNIKICLV KNDYPPQYSPEVFTKVMEQVENFEEYSETTPESKVVPFNYSDYTQRPMMVAENSAPYGRK KDGE >gi|308165745|gb|AEHO01000013.1| GENE 4 4791 - 5921 967 376 aa, chain - ## HITS:1 COG:no KEGG:Fluta_2797 NR:ns ## KEGG: Fluta_2797 # Name: not_defined # Def: restriction modification system DNA specificity domain-containing protein # Organism: F.taffensis # Pathway: not_defined # 192 364 6 181 397 123 36.0 1e-26 MGLSRYKLGELIELVTETNSDLKYQENDVRGMTITKEIIPTKANVKNTDLSKFLVVHPNE FIFNPRTHGKKIGFGYNNSNKAFLISWNNIAFSLSEYGRKLALPKYLFLHFNRSEWDRAA CFSSWGSSTEVFSWNALCDMDIDLPSLAIQQKYVNVYNAMVSNQKAYERGLEDLKLTCDA YIEDLRRQIPCESIGPYIDSVNENNSENAYTHVQGVESGGSFIDTRANMQGVDIGKYTVV RKGNIAYNPSRINIGSIALYNSDEPCVVSPMYSVFKVTDTDKVSPEYLMLWFNRTEFQRY TWYYAAGSVRDTFDFNLMQEVEFPIPSIETQKDIVNILTAYNKRKSINEKLKAQIKDICP ILIKGSIEEGRNTKEA >gi|308165745|gb|AEHO01000013.1| GENE 5 5908 - 7515 1381 535 aa, chain - ## HITS:1 COG:Cj1553c KEGG:ns NR:ns ## COG: Cj1553c COG0286 # Protein_GI_number: 15792861 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Campylobacter jejuni # 1 523 1 492 500 334 38.0 3e-91 MAKKKTAEKTLNIDSILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIEAL RKTLIEQGLNPDDANIKAAFFDDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALSK LEAEDPQLKGCFIKGTFTTRNLAANDIKKIVDEVNKISHKAFGKEKDLIGYVYEYFLKEF AVNATKEEGEFYTPHDVVKLIAAMIEPFEGRLYDPACGSGGMFIQSAELVKSKQGNLNSI NVYGQEKEAATYRLAKMNLALRGISHNLGDTNDSSFTHDLHKGLYFDYVMANPPFNLKGW YDENLKNDARWADYGTPPESNANYAWILHILSHLKPSNGVAGFLLANGALNDSDTLEIRK KLIQNDKVEAIIVLPRELFITTDISVTLWILNQNKKGGKYHDRNLRNREHEILFMDLRTW TENAVKGENKKKVRLSAEQIQRAANIYHTWQSEGTDGNNYAVPELYRSVGMAEIESKDWS LTPSKYIEFIDHDLEIDYEKEMARIQAEMKDLLHEEKESQKMLEDAFRGIGYGIE >gi|308165745|gb|AEHO01000013.1| GENE 6 7515 - 7727 311 70 aa, chain - ## HITS:1 COG:no KEGG:Swol_1464 NR:ns ## KEGG: Swol_1464 # Name: not_defined # Def: hypothetical protein # Organism: S.wolfei # Pathway: not_defined # 1 67 20 86 95 77 55.0 2e-13 MAVSYKKLLHRMIEEDISNQDLMRMSNISANIITKLRTGQYISLEKIESICTALHCTPDD ILEFIPEDEK Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:46:15 2011 Seq name: gi|308165699|gb|AEHO01000014.1| Lactobacillus iners LactinV 09V1-c contig00054, whole genome shotgun sequence Length of sequence - 32159 bp Number of predicted genes - 45, with homology - 45 Number of transcription units - 4, operones - 3 average op.length - 14.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 5753 6536 ## COG5523 Predicted integral membrane protein - Prom 5828 - 5887 8.8 - Term 5831 - 5885 11.2 2 2 Op 1 59/0.000 - CDS 5899 - 6294 644 ## PROTEIN SUPPORTED gi|238855101|ref|ZP_04645429.1| ribosomal protein S9 3 2 Op 2 7/0.000 - CDS 6308 - 6751 696 ## PROTEIN SUPPORTED gi|238853451|ref|ZP_04643829.1| ribosomal protein L13 4 2 Op 3 8/0.000 - CDS 6853 - 7635 646 ## COG0101 Pseudouridylate synthase 5 2 Op 4 34/0.000 - CDS 7636 - 8433 663 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 6 2 Op 5 15/0.000 - CDS 8434 - 9048 274 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 7 2 Op 6 15/0.000 - CDS 9024 - 9284 79 ## PROTEIN SUPPORTED gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 8 2 Op 7 6/0.000 - CDS 9260 - 10108 423 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - Prom 10230 - 10289 6.9 9 2 Op 8 50/0.000 - CDS 10291 - 10674 570 ## PROTEIN SUPPORTED gi|116628989|ref|YP_814161.1| 50S ribosomal protein L17 10 2 Op 9 32/0.000 - CDS 10699 - 11637 1215 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 11 2 Op 10 48/0.000 - CDS 11683 - 12072 635 ## PROTEIN SUPPORTED gi|42518454|ref|NP_964384.1| 30S ribosomal protein S11 12 2 Op 11 . - CDS 12093 - 12443 531 ## PROTEIN SUPPORTED gi|42518453|ref|NP_964383.1| 30S ribosomal protein S13 13 2 Op 12 . - CDS 12476 - 12592 203 ## PROTEIN SUPPORTED gi|116628985|ref|YP_814157.1| 50S ribosomal protein L36 14 2 Op 13 6/0.000 - CDS 12607 - 12858 297 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 15 2 Op 14 28/0.000 - CDS 12904 - 13554 725 ## COG0563 Adenylate kinase and related kinases 16 2 Op 15 53/0.000 - CDS 13564 - 14868 1424 ## COG0201 Preprotein translocase subunit SecY 17 2 Op 16 48/0.000 - CDS 14868 - 15308 656 ## PROTEIN SUPPORTED gi|116628981|ref|YP_814153.1| 50S ribosomal protein L15 18 2 Op 17 50/0.000 - CDS 15339 - 15524 269 ## PROTEIN SUPPORTED gi|227525640|ref|ZP_03955689.1| 50S ribosomal protein L30 19 2 Op 18 56/0.000 - CDS 15537 - 16049 790 ## PROTEIN SUPPORTED gi|42518446|ref|NP_964376.1| 30S ribosomal protein S5 20 2 Op 19 46/0.000 - CDS 16067 - 16426 535 ## PROTEIN SUPPORTED gi|116628978|ref|YP_814150.1| 50S ribosomal protein L18 21 2 Op 20 55/0.000 - CDS 16453 - 16983 824 ## PROTEIN SUPPORTED gi|227888838|ref|ZP_04006643.1| 50S ribosomal protein L6 22 2 Op 21 50/0.000 - CDS 17008 - 17406 632 ## PROTEIN SUPPORTED gi|116628976|ref|YP_814148.1| 30S ribosomal protein S8 23 2 Op 22 50/0.000 - CDS 17433 - 17618 332 ## PROTEIN SUPPORTED gi|42518442|ref|NP_964372.1| 30S ribosomal protein S14 24 2 Op 23 48/0.000 - CDS 17634 - 18098 647 ## PROTEIN SUPPORTED gi|228912861|ref|ZP_04076508.1| 50S ribosomal protein L5 25 2 Op 24 57/0.000 - CDS 18190 - 18432 343 ## PROTEIN SUPPORTED gi|42518440|ref|NP_964370.1| 50S ribosomal protein L24 26 2 Op 25 50/0.000 - CDS 18453 - 18821 585 ## PROTEIN SUPPORTED gi|42518439|ref|NP_964369.1| 50S ribosomal protein L14 27 2 Op 26 . - CDS 18850 - 19116 425 ## PROTEIN SUPPORTED gi|42518438|ref|NP_964368.1| 30S ribosomal protein S17 28 2 Op 27 . - CDS 19139 - 19336 291 ## PROTEIN SUPPORTED gi|116628971|ref|YP_814143.1| 50S ribosomal protein L29 29 2 Op 28 50/0.000 - CDS 19314 - 19751 690 ## PROTEIN SUPPORTED gi|116628970|ref|YP_814142.1| 50S ribosomal protein L16 30 2 Op 29 61/0.000 - CDS 19754 - 20428 1026 ## PROTEIN SUPPORTED gi|42518435|ref|NP_964365.1| 30S ribosomal protein S3 31 2 Op 30 59/0.000 - CDS 20443 - 20796 521 ## PROTEIN SUPPORTED gi|161506878|ref|YP_001576832.1| 50S ribosomal protein L22 32 2 Op 31 60/0.000 - CDS 20815 - 21099 438 ## PROTEIN SUPPORTED gi|42518433|ref|NP_964363.1| 30S ribosomal protein S19 33 2 Op 32 61/0.000 - CDS 21122 - 21958 1356 ## PROTEIN SUPPORTED gi|227521625|ref|ZP_03951674.1| 50S ribosomal protein L2 34 2 Op 33 61/0.000 - CDS 21974 - 22276 448 ## PROTEIN SUPPORTED gi|116628965|ref|YP_814137.1| 50S ribosomal protein L23 35 2 Op 34 58/0.000 - CDS 22276 - 22890 551 ## PROTEIN SUPPORTED gi|167755913|ref|ZP_02428040.1| hypothetical protein CLORAM_01433 36 2 Op 35 40/0.000 - CDS 22905 - 23534 1014 ## PROTEIN SUPPORTED gi|42518429|ref|NP_964359.1| 50S ribosomal protein L3 37 2 Op 36 . - CDS 23562 - 23870 494 ## PROTEIN SUPPORTED gi|42518428|ref|NP_964358.1| 30S ribosomal protein S10 - Prom 24007 - 24066 9.2 - Term 24065 - 24100 1.1 38 3 Op 1 11/0.000 - CDS 24114 - 25079 865 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 25108 - 25167 12.0 39 3 Op 2 . - CDS 25173 - 26558 1451 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) 40 3 Op 3 . - CDS 26592 - 27428 790 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 27459 - 27518 7.3 - Term 27497 - 27550 10.2 41 4 Op 1 2/0.000 - CDS 27566 - 27808 321 ## COG4466 Uncharacterized protein conserved in bacteria 42 4 Op 2 7/0.000 - CDS 27886 - 28773 848 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 43 4 Op 3 3/0.000 - CDS 28763 - 29326 656 ## COG1658 Small primase-like proteins (Toprim domain) 44 4 Op 4 8/0.000 - CDS 29310 - 30083 724 ## COG0084 Mg-dependent DNase 45 4 Op 5 . - CDS 30083 - 32062 2194 ## COG0143 Methionyl-tRNA synthetase - Prom 32086 - 32145 7.9 Predicted protein(s) >gi|308165699|gb|AEHO01000014.1| GENE 1 2 - 5753 6536 1917 aa, chain - ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 1845 1908 278 344 345 75 50.0 8e-13 MKKCHNTKLTSTIYLASLLAGGIYYNNAQVHVYASVENPKFDQPIKVDQYLEDIPFVQAP KVGWGSYKVDQTLDGKKIKLKINGQEHEFAKGITAHADACLIYDLSKIKSNIFETYLGID DTKTGEVEFRIYLDDELYYASGKVNRNNTQHILMNIAGKKQLKIIVDSLGYNGSDHSILA DPKFYFLDLKDKKIPDLANENPGFSYNKINDAPYNLNFEQYYFLKRMGKARLFSYMMTDK SNIKYLNWLFNNLSLLHSYNTASLPRGGNQIGFLKVFKELLDHDPDLKSDSEKQKIAMAV ALEYANGNINFWANSNLKSDPIKRYDIYSTLNNTPGALRPIFKTLSVELLRHVVNAEISD EDIIWIRDKIKRENPQLLFNNDELSNATYKYIAYNPFNKYGDDVQKGGFYGDNPTLEKVV ELGGVCGSVSKFDVVVLKSFGVPANVIGQPGHAAVTYMRDDGSWTRRNEIYSWGRSQGGT ATLLAGGSSGYNTTYNILASDILKDKDNYQQALKYYEFYKNVQPGLLKNSLAEKIITLVP CFVPVYRDQINELKDNRSATAKDYYELSKKILSTFKNYPKVMFDLLSPLKKGFAQDRYLL TDFAINYIQQVDSVTNSIARDVMKEDEYQKEYNSYNSVLGDFSFSGKNRYNLENVHPDTE YSFDGGITWHSSITNSPSLTSSEIAQLNTKYGILLRLKGMKKAIQIKLAKQVLPSFVRAD DQENIIVGLNHNMEYSLDNGQNWINGNVVPDLSGKCTVLVREKAANKSFASDVKKLEFTN DNQIADDIMLGNMKVVQYSSQQNDTNQAAVNTINGTGTANNFWHTKWAGDSNRYITIGFN KEYTLKKFYYTPRLDNGENGNILKYEIYISNDGKQFTKVKAGEFTYSSPNYKSPKVVELP DGTQTKYFKLKIISAKGTGSYAAATKFAFEIPHEEAVAAYQEKQQKAKQQFNSELVEDLK NFKNNVESLSQLDQAKLCLGDLNLLKTDINKLDTKNINYIQELNKAKKRYDLLRDEIIIK NTIYQKQNDSKLLETFNKNNQQILTKSITDVTDKDINIITSALKQLKEKPEYSQIKTNNS EIILGLERKLLRAQDKKLANEFKQQFKTELELNEKNVSLNDYNNIVVAYYNLLALSSEIQ GDLNNEKTHLYDLLQFLEKNAVSMQNDIEFKKNNNEILSLSVDKITLKNLDKVTEQVNNA FYQYNFLNSFDKARLKASKEHLDALQSKILTFENIKAKENLLSQLQQFKNSFVNESDEIK HSWLQEYNFAKSVATRAVATNVYYQASAILLEKYEELSRTVYLQKDNIAKANKFKERFST LLNKDISKISIYDKKLLASANDQWRRQNEATLALLTNERAKLDAIEDKIESTQANYHTVI DDNINKLITQLKKDRNNSYSIYKTDIDNILQESEQAKKEPDLIKQRELLLDIKKKRSSIL AKQANLKNKVTIIHNSLLPTLNISTNLVTPADRDRINSQLIYLNTLTPDIKASLGDEKST LENLINKINEIEQSPNKDKILKLIDQKVKAEHEIRAYSHLSYKEIQNYLKAIEKASDSTT VVAQLQSAQKLHNQRDASAKQELVTLKNKIKSILNDDNLSKMEPDNQTQIKKIKIDDVKL DGMTLGELSELFKYINNEISLLKSKDQSEKEFKQNKINYDEKIKDINQKISEINHKIVKV KECDVNYQKQLVDISNKVDFGLGLNEIDSTIKSLDKLSTNVDASLDKQAKAEKDKLILSI SAAKQKINSMNYLTNEEKADYLAKIDLAVSDDIVNKIVSDAVNKNHEKSISVKPVTPETP KIPSKPEVSVKPETPKTPSVPEVTVKPVKPQTPSVPEVPVTPEKPNTPSEPETPVTPVKP KTPSEPEASVTPVKPKTPSEPETPVTPVTPETPKTPSVPEVPVKPKTPSVPEVPVTP >gi|308165699|gb|AEHO01000014.1| GENE 2 5899 - 6294 644 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855101|ref|ZP_04645429.1| ribosomal protein S9 [Lactobacillus jensenii 269-3] # 1 131 1 131 131 252 95 2e-66 MAQQAAYAGTGRRKNSVARVRLVPGNGKITVNKEDVTEYIPYPNLVKDLKQPLALTETEG QYDVIVNVNGGGFSGQAGAIRHGIARALLEVDPDFRGSLKKAGLLTRDPRMKERKKPGLK KARKASQFSKR >gi|308165699|gb|AEHO01000014.1| GENE 3 6308 - 6751 696 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238853451|ref|ZP_04643829.1| ribosomal protein L13 [Lactobacillus gasseri 202-4] # 1 147 1 147 147 272 89 2e-72 MRTTPLAKTSDIKRKWYVIDATDVALGRLSAAVATILRGKNKPQYTPNVDTGDNVIIINA AKLKLTGRKSTDKIYYHHSDYRGGLRATAAGELLANNPVRLVELSVKGMLPKNTLGHQEF LKMHVYAGEDHKHAAQKPETLDINKLI >gi|308165699|gb|AEHO01000014.1| GENE 4 6853 - 7635 646 260 aa, chain - ## HITS:1 COG:lin2747 KEGG:ns NR:ns ## COG: lin2747 COG0101 # Protein_GI_number: 16801808 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Listeria innocua # 1 247 1 248 248 238 50.0 9e-63 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG QVIHFDYPGNVIPAKNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSR FTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLEQN GDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNTAPASGLY LYHVFYDDLPKKYNLIAKRD >gi|308165699|gb|AEHO01000014.1| GENE 5 7636 - 8433 663 265 aa, chain - ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 252 2 253 266 234 47.0 9e-62 MNNILIGRYIPGTSLIHKMDPRGKLITSFLFVMIIFLANNWSTYAVLFVFALLAVCMTKI SFKFFWRGIRPLIWLILFTVIMQLLFTGSGKVLWRVGFLKVTDYGIISSIYMCIRLITII VVSTVFTLTTTSLQIADAIEWLIHPLKYLKVPVGEIALVLSIALRFVPTLMDEATKIINA QKARGSDISTGKFIEKIKKIVPILVPLFIRSLSIALDLAVAMEARGYRDGMPRSRYRQLA WHIIDILNLGSLAILIGLLLLLRRY >gi|308165699|gb|AEHO01000014.1| GENE 6 8434 - 9048 274 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 1 181 201 379 398 110 32 1e-23 LFILRKHIGLVFQFSENQLFADTVLKDVMFGPINFGISVDKAKQLAEKWLRFVGIGSELF DKSPFDLSGGQMKRVAIAGVLAFEPDILCLDEPVSSLDPQGRKLIMQLFKKYQQDGHTVI LVSHNMDEVYHYSDNIIVMENGTIIKQGSPRKIFEDKNWLDKHKLVRPSILKFIDDLEKV GFKVTKTNDLSNLLGDILQQIGVK >gi|308165699|gb|AEHO01000014.1| GENE 7 9024 - 9284 79 86 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 [Haemophilus influenzae PittAA] # 23 76 17 70 205 35 37 2e-19 MAIKFEKVGYTYGRETAFSSMGLNDINTVIEKNTFNSVIGHTGSGKTTLLQALDGLIKIS TGTISLKNMVINVNSDEKSYLFLESI >gi|308165699|gb|AEHO01000014.1| GENE 8 9260 - 10108 423 282 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 11 263 135 384 398 167 36 8e-41 MGYKIVDVNNISYQYYDSSQLALDHVSFTVDSGMWVSVVGPNGSGKSTLTKILDGLLVPK SDKDSHIIIDGIKLSDNTLYDIRNKIGIVFQDPENQFVGATVADDVAFGLENRNIDRNQM IGIVTDSLKQVDMLKFADKAPNMLSGGQKQRVAIAGVLAIKPKIIILDEATSMLDPDGKN IILKLIKKLQKQNNYTVISITHDLEEAIYSDKLLILKAGKVLRYDHPRKIFNDVQLLERS GLDLPFVFKIKSQLSQMGVNIPEEIIGQKELVNYLWQLSSKK >gi|308165699|gb|AEHO01000014.1| GENE 9 10291 - 10674 570 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628989|ref|YP_814161.1| 50S ribosomal protein L17 [Lactobacillus gasseri ATCC 33323] # 1 127 1 127 127 224 88 7e-58 MSYRKLGCDSAHRKAMLRALTTQLIMNERIETTETRGKEIRKTVEKMITLGKRGDLSARR QAAAYVRNEIADIHEEKDGLVVKTALQKLFSDVAPRYKDRNGGYTRMYKLAMPRKGDAAP MVIIELV >gi|308165699|gb|AEHO01000014.1| GENE 10 10699 - 11637 1215 312 aa, chain - ## HITS:1 COG:BH0162 KEGG:ns NR:ns ## COG: BH0162 COG0202 # Protein_GI_number: 15612725 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus halodurans # 1 312 1 314 314 382 63.0 1e-106 MIEFEKPNITVIDQEESYGKFVVEPLERGFGTTLGNSLRRVLLTSISGTALSYIMIDGVL HEFSTIPGVREDVTKIILNLKKLELKLLVDEEKMVEIDVEGPAVVTAADLKVDADVEILN PDQYICTIAEGGHLHMSIAIKNGRGYIPASENKSDDMPIGVIPVDSLFSPIKKVNYQVEN ARVGKRDDYDKLTLELWTDGSITPNDALSFAAKILEEHFKVFMSADMSDQFANVMIEKED KSNEKKLEMTIEELDLSVRSYNCLKRAGINTVQELNNKSEADMMRVRNLGRKSLEEVKNK LTELGLSFSKED >gi|308165699|gb|AEHO01000014.1| GENE 11 11683 - 12072 635 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518454|ref|NP_964384.1| 30S ribosomal protein S11 [Lactobacillus johnsonii NCC 533] # 1 129 1 129 129 249 97 2e-65 MAAKKTARKRRVKKHVESGVAHIHSTFNNTLVMITDVQGNAVAWSSAGALGFKGSRKSTP FAAQMAAEAATKTAMDQGMKHVEVSVKGPGAGREAAIRALQATGLEITAIRDVTPVPHNG SRPPKRRRV >gi|308165699|gb|AEHO01000014.1| GENE 12 12093 - 12443 531 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518453|ref|NP_964383.1| 30S ribosomal protein S13 [Lactobacillus johnsonii NCC 533] # 1 115 1 115 115 209 88 2e-53 MARIAGVDLPRDKRIVIALTYIYGIGEPTAKVICEAAGVSEDVRTSDLTPEQQEKLRSEV DKFRVEGDLRREVNLNIKRLVEIGSYRGIRHRRGLPVRGQNTKNNARTRKGSKGKR >gi|308165699|gb|AEHO01000014.1| GENE 13 12476 - 12592 203 38 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628985|ref|YP_814157.1| 50S ribosomal protein L36 [Lactobacillus gasseri ATCC 33323] # 1 38 1 38 38 82 97 2e-15 MKVRPSVKPMCEHCKIIKRNGRVMVICSANPKHKQRQG >gi|308165699|gb|AEHO01000014.1| GENE 14 12607 - 12858 297 83 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 11 81 1 71 72 119 81 3e-26 MASCQFGGTILAKEDVIEVEGKVIDTLPNAMFKVELENGATILAHVSGKIRMHYIRILPG DRVTVELSPYDLTKGRITYRFIK >gi|308165699|gb|AEHO01000014.1| GENE 15 12904 - 13554 725 216 aa, chain - ## HITS:1 COG:BH0155 KEGG:ns NR:ns ## COG: BH0155 COG0563 # Protein_GI_number: 15612718 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Bacillus halodurans # 2 215 1 213 217 242 58.0 4e-64 MINLILLGLPGAGKGTASERIVDEFHLAHISTGDMFREAIANETPVGLEAKSYIDNGNLV PDEVTAKLVEERLQQKDTEKGFILDGFPRTTVQAELLEDITKRLDKRLTNVISIDVSEDV LIKRLSARYMCKACGATYNKISNPTKVEGKCDRCGGSEFYQRDDDKPEVVKNRLEVNKKM NTPLKDFYDKKGILSSVNGEQTPDKVFKEIYDILKK >gi|308165699|gb|AEHO01000014.1| GENE 16 13564 - 14868 1424 434 aa, chain - ## HITS:1 COG:L0333 KEGG:ns NR:ns ## COG: L0333 COG0201 # Protein_GI_number: 15674060 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecY # Organism: Lactococcus lactis # 2 433 3 432 439 421 49.0 1e-117 MFTTLKNAFKDKEIRGKIYYTLFILLLYRIGANIAVPGINAKALAILANSSAKNLIPMLD TISGGGLDTFSIFALGVSPYITAQIVIQLLQMDIVPKLVEWGKQGEVGRRKTNQVTRYLA LVVAFIQSIGITLGFNVLTQMGLVRTQTVETYVQIAIIMTAGTMLLTWLGDEITDKGLGN GVSVLIFAGIIARLPHGLYKLFNDSIINTSSSDRINGILFFIGMLIIIFLVAKFVTWFQQ ADLRVPIQYTRRATLSGSESFLPLKINVSGVIPVIFASSFIVTPATILEAFRLNHGGDQW FQVCQEIFSLQTTYGALIYTFLIVLFTFFYAFVQVNPEKLSENLQKQGAYIPSVWPGKDT QKYVSQILMRISTVGAIFLGLVALLPQLATNMWNLPQSIGLGGTSLLIVIGVVLELSRQI DGLLMKREYVGFIR >gi|308165699|gb|AEHO01000014.1| GENE 17 14868 - 15308 656 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628981|ref|YP_814153.1| 50S ribosomal protein L15 [Lactobacillus gasseri ATCC 33323] # 1 146 1 146 146 257 87 7e-68 MKLNELKATEGSRRNRKRVGRGTSSGYGKTSGRGQKGQLARSGGKTRLGFEGGQMPLYRR MPKRGFNNINRKEYAIINLNDLNKFEAGSEVTIDSLKEAGIVKKELAGVKLLANGKLDVK LTVKVNKVSESAKKAVETAGGTVEVI >gi|308165699|gb|AEHO01000014.1| GENE 18 15339 - 15524 269 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525640|ref|ZP_03955689.1| 50S ribosomal protein L30 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 108 86 6e-23 MTELKVTLIRSAAHRLPNQRKVVKALGLGKVSSNVVLPDNAATRGALLKIAHLISVEEVS K >gi|308165699|gb|AEHO01000014.1| GENE 19 15537 - 16049 790 170 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518446|ref|NP_964376.1| 30S ribosomal protein S5 [Lactobacillus johnsonii NCC 533] # 1 170 1 174 174 308 91 2e-83 MANHNDSRKDRKKDDIEDQLVAINRITKVVKGGRRMRFAAVVVVGDRKGHVGFGTGKAQE VPEAIRKAVEAGKKRMIEVPVVGTTIPHDVLGHFGSGSIMLKPAEAGSGVAAGGAVRIVM DLAGISDVTSKSLGSNTPINVIRATMDGLKKLKTREEVLKLRESAKSLED >gi|308165699|gb|AEHO01000014.1| GENE 20 16067 - 16426 535 119 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628978|ref|YP_814150.1| 50S ribosomal protein L18 [Lactobacillus gasseri ATCC 33323] # 1 119 1 119 119 210 89 8e-54 MISKPDKNKLRAKRHRRIRGKISGTAERPRLSIFRSNKNIYAQLIDDVEGVTLASASTND KAITAEGSKIEQAAQVGKALAEAASKKNIKTVVFDRSGYLYHGRVAALAEAARENGLEF >gi|308165699|gb|AEHO01000014.1| GENE 21 16453 - 16983 824 176 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227888838|ref|ZP_04006643.1| 50S ribosomal protein L6 [Lactobacillus johnsonii ATCC 33200] # 1 176 1 176 176 322 90 2e-87 MSRIGLKVINVPESVTVTKNGDNITVKGPKGELTRYFDPRIIFEQKDGEITFSRSSESDK ALHGTSRANLAAMIEGVNTGYVKKLTLVGVGYRANAQGKKLTLNVGYSHPVEFEAPEGVT VTTPAATTIQIEGISKQVVGQFAAEIRDVRPPEPYKGKGIRYEDEYVRRKEGKTGK >gi|308165699|gb|AEHO01000014.1| GENE 22 17008 - 17406 632 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628976|ref|YP_814148.1| 30S ribosomal protein S8 [Lactobacillus gasseri ATCC 33323] # 1 132 1 132 132 248 93 4e-65 MVMTDPIADYLTRIRNANMAKHESVVIPASSMKKSLSEILKQEGFIRDYQVEEDNKQGLI TVFLKYGPNNERVISGLKRISKPGLRNYVSAENLPKVLNGLGIAIISTSAGIITDKEARE KNVGGEVIAYVW >gi|308165699|gb|AEHO01000014.1| GENE 23 17433 - 17618 332 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518442|ref|NP_964372.1| 30S ribosomal protein S14 [Lactobacillus johnsonii NCC 533] # 1 61 1 61 61 132 98 3e-30 MAKTSQIVRNHRPAKFSSREYTRCERCGRPHSVYRKFKLCRICLKDLAHKGQIPGLKKAS W >gi|308165699|gb|AEHO01000014.1| GENE 24 17634 - 18098 647 154 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228912861|ref|ZP_04076508.1| 50S ribosomal protein L5 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] # 1 154 1 154 154 253 80 8e-67 MQIPKIEKIVLNMGVGDAVSNAKNLDEAVEELTLISGQKPLITKAKKSIANFRLREGMSI GAKVTLRGDRMYDFLYKLINVSLPRVRDFRGVSSRSFDGRGNYTLGVKEQLIFPEIDYDK VNRVRGLDVVIVTTAKSDEEAHELLAQFGMPFSK >gi|308165699|gb|AEHO01000014.1| GENE 25 18190 - 18432 343 80 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518440|ref|NP_964370.1| 50S ribosomal protein L24 [Lactobacillus johnsonii NCC 533] # 1 78 1 76 79 136 88 1e-31 MFVKTGDKVKVIAGNDKGKEGIVLSVNAKTNRVVVKGIHKVKKHEKPSQTNANGGVVEKE GSIHVSNVKVIEKAKKEDKK >gi|308165699|gb|AEHO01000014.1| GENE 26 18453 - 18821 585 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518439|ref|NP_964369.1| 50S ribosomal protein L14 [Lactobacillus johnsonii NCC 533] # 1 122 1 122 122 229 96 1e-59 MIQHESRLKVADNSGARELLVIKILGGSTRKTGNIGDIVVCAVKQATPGGVVKKGDVVKA VIVRTKSGARREDGSYIKFDENAAVIINADKSPRGTRIFGPVARELREHDFMKIVSLAPE VL >gi|308165699|gb|AEHO01000014.1| GENE 27 18850 - 19116 425 88 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518438|ref|NP_964368.1| 30S ribosomal protein S17 [Lactobacillus johnsonii NCC 533] # 1 88 1 88 88 168 93 5e-41 MSETNERNRRHVYQGRVVSDKMDKTITVVVDTYKNHPVYKKRIKYSKKYYAHDEKNEAKI GDIVRIMETRPLSHAKRYRLITIVKKSI >gi|308165699|gb|AEHO01000014.1| GENE 28 19139 - 19336 291 65 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628971|ref|YP_814143.1| 50S ribosomal protein L29 [Lactobacillus gasseri ATCC 33323] # 1 63 1 63 69 116 93 2e-25 MANLMKTKDIRALTTDQMLEKEKQYKEELFNLRFQQATGQLENTARLKKVRKNIARIKTI LSENN >gi|308165699|gb|AEHO01000014.1| GENE 29 19314 - 19751 690 145 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628970|ref|YP_814142.1| 50S ribosomal protein L16 [Lactobacillus gasseri ATCC 33323] # 1 144 1 144 145 270 93 8e-72 MLVPKRVKHRREFRGKMRGEAKGGKTIAFGEYGLQAVESSWITNRQIEAARIAMTRYMKR GGRVWIKIFPHKSYTAKGVGVRMGSGKGAPEGWVAVVKRSKIMFEIGGVSEDVAREALRL ASNKLPIKTKFVKKNVEVGGESNED >gi|308165699|gb|AEHO01000014.1| GENE 30 19754 - 20428 1026 224 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518435|ref|NP_964365.1| 30S ribosomal protein S3 [Lactobacillus johnsonii NCC 533] # 1 224 1 222 222 399 88 1e-111 MGQKINPNGFRLGINRDWEAKWYAGKDYANNLNEDLRIRKYIEQKLADASISNVEIERAA NRINLSIHTAKPGMVIGKGGKEVEELRTRLNTITGKNVHINIVEIKKPDLEAKLVGESIA KQLEARIAFRRATRKATQRSMHVGAKGIKVQTAGRLNGADMARREWHTEGSVPLHTLRAD IDYAWVEAATTYGQIGVKVWINRGEILPQRKNKPVASKKAKGGN >gi|308165699|gb|AEHO01000014.1| GENE 31 20443 - 20796 521 117 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161506878|ref|YP_001576832.1| 50S ribosomal protein L22 [Lactobacillus helveticus DPC 4571] # 1 117 1 117 117 205 91 3e-52 MAEQINSARSEARTVRIAPRKARLVVDLIRGKSVAEALAILEFTPRSASPIVKKVLKSAI ANAEHNYDLESANLYVSEAYVNEGPTLKRFRPRAKGSASPINKRTSHVVVKVSVKND >gi|308165699|gb|AEHO01000014.1| GENE 32 20815 - 21099 438 94 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518433|ref|NP_964363.1| 30S ribosomal protein S19 [Lactobacillus johnsonii NCC 533] # 1 93 1 92 95 173 91 1e-42 MSRSIKKGPFADSHLIKKIEAQESSEKKQVIKTWSRRSTIFPSFVGYTIAVYDGRKHVPV YVTEDMVGHKLGEFVPTRTFRGHKSTADKATTTK >gi|308165699|gb|AEHO01000014.1| GENE 33 21122 - 21958 1356 278 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227521625|ref|ZP_03951674.1| 50S ribosomal protein L2 [Lactobacillus gasseri JV-V03] # 1 278 1 278 278 526 92 1e-149 MAIIKYKPTTNGRRNMTTSDFAEITKKKPEKTLLESQSHKAGRNSYGHITVRHRGGGHKQ KYRIIDFKRNKDEVKAVVKAIEYDPNRTANIALVHYTDGVKSYILAPKGLTVGTVIESGK GSDIKPGNALPLADIPAGTEIHNIELKPGKGGQLVRSAGTSAQVLGQDGRYTLVRLQSGE VRKILSTCRATIGLVGNEQHSLIQLGKAGRSRWLGKRPQSRGSVMNPNDHPHGGGEGKAP VGRTQPMTPWGKKSRGIKTRNSKASSEKLIIRHRKGNK >gi|308165699|gb|AEHO01000014.1| GENE 34 21974 - 22276 448 100 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628965|ref|YP_814137.1| 50S ribosomal protein L23 [Lactobacillus gasseri ATCC 33323] # 1 96 1 96 98 177 92 1e-43 MDAHDIILRPVVTEKSMDLMDDKKYTFDVLVSATKTQVRNAVEEVFDVKVKKVNIMNVRG KDKRVGRYTGKTARRRKAIVTLTEDSNSIKIFNDNESKEK >gi|308165699|gb|AEHO01000014.1| GENE 35 22276 - 22890 551 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167755913|ref|ZP_02428040.1| hypothetical protein CLORAM_01433 [Clostridium ramosum DSM 1402] # 1 203 2 206 207 216 50 1e-55 MAIKVIDQKGKSVGEVDLNKCIFEVEPNDSVVFEAIIRQRAGKRQGTHATKNRSAVSGGG KKPWKQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKVDMPRKARRLAIKSVLSQKVADG NLIVLDQLTLATPKTKDLKAIFSAIKVSGKVLVVSDDKNVQLSGKNLPQVKVVPVNGLNV VDAVDYEKLLLTQDAIKRIEEVLA >gi|308165699|gb|AEHO01000014.1| GENE 36 22905 - 23534 1014 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518429|ref|NP_964359.1| 50S ribosomal protein L3 [Lactobacillus johnsonii NCC 533] # 1 209 1 209 209 395 93 1e-109 MTKGILGRKVGMTQVFSKNGILVPVTVIEATPNVVLQVKTNESDGYEAVQVGYQDVREVL SNKPAKGHAAKAKTAPKRFIREIRDVELEGYEVGSEIKVDTFSEGDVVDVTGTSKGHGTQ GNIKRWGQSRGPETHGSRYHRIPGSMGSIINRVPKGKKLPGHMGGKQVTVQNLVIEKVVP EKNVLLIKGNVPGAKNSLIIVKSAVKAAK >gi|308165699|gb|AEHO01000014.1| GENE 37 23562 - 23870 494 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518428|ref|NP_964358.1| 30S ribosomal protein S10 [Lactobacillus johnsonii NCC 533] # 1 102 1 102 102 194 96 4e-49 MASQQIRIRLKSYEHSILDESAAKIVATAQRTGAEISGPVPLPTERTLFTVLRSPHKNKD SREQFEIRTHKRLIDIVNPTPKTVDSLMKLDLPSGVDIEIKL >gi|308165699|gb|AEHO01000014.1| GENE 38 24114 - 25079 865 321 aa, chain - ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 5 315 7 316 317 416 66.0 1e-116 MSQLDNEIKIFALNSNKPLAKSIADTVGVELGKSDVKRFSDGEIQINIDESVRGKDVFLV QSTSAPVNDNLMELLIMIDAVKRASAKTINLVMPYYGYARQDRKTRAREPITAKLVADML QAAGATRILSLDLHAPQIQGFFDIPVDNLMGAPLLADYFLSHGLEKDAVVVSPDHGGVTR ARKLAEFLKTSIAIVDKRRPKANVAEVMNIIGDVKGKRAIIIDDMIDTAGTITLASQALI DAGATEVYASATHAVLSGPAIQRLNDSPIKKLILTDSINQPEEKQLSKAELVSVGPLMGR AIKFIINNQPVSPLFDTRFQK >gi|308165699|gb|AEHO01000014.1| GENE 39 25173 - 26558 1451 461 aa, chain - ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 3 448 4 449 457 499 57.0 1e-141 MNKYVVILAAGKGTRMKSKLYKVLHQVCGKSMVEHVVDAAQGTNPDKIVTVVGNGASDVK SVLAGKSEFAFQKEQLGTGHAVLATADLLKNLSGYTIVTTGDTPLFTAATFNELFEQHIQ HKNSATVLTAIVKDPFGYGRIIRDAAGNVLRIVEQKDCSVSESAINEINTGVFCFDNKEL FSALQKVTNHNAQKEYYLTDVLEIMREKGLVVGACQMADYTESLGVNDRIALAEATKLMQ RRINEQHMKNGVTLIDPANTYIDCDVQIGSDTIIEPNVVIKGNTIIGNECYIASGSRLVN ARIGNNVTITSSTIVDSTMHDRSDIGPNSHLRPKSEIMSGAHIGNFVEVKKATIGENTKL GHLTYVGDATLGKDINVGCGTIFSNYDGVEKLHTNVGDHTFIGAGSTLIAPVNIADHAFI AADSTITKDVAKYDMAIARGRQVNKEGYWHKLPLAKNKAWD >gi|308165699|gb|AEHO01000014.1| GENE 40 26592 - 27428 790 278 aa, chain - ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 266 3 268 272 285 53.0 5e-77 MKRSERLVDMVQYLTTHPHTLISLPFFATRYDSAKSSISEDLAILRNTFAKYEIGILETV AGVAGGVRLIPFIGFNTAEDYLKQLADRIEDPERILPGNFIYLSDVLGDPQELRHVGELI ATKYAYSNVDYVMTIETKGIAIANSVSRLLNVPYVLVRRRPKITEGATVSVNYVASSSDR VEKMELAKRSLPEGSNVLIVDDFMKGGGTLNGMEELTKEFKCHVVGMCVLCEASNPVNKV VDDYQTLVKITEVDRSKGIIKAKPGNLLEQIDFQKFPK >gi|308165699|gb|AEHO01000014.1| GENE 41 27566 - 27808 321 80 aa, chain - ## HITS:1 COG:SA0452 KEGG:ns NR:ns ## COG: SA0452 COG4466 # Protein_GI_number: 15926171 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 77 1 77 87 96 53.0 1e-20 MPMSLMAIKEKLDNHLGQELIVIAQAGRKKVIRRKGVLKKTYPAVFVVDLDQQQNNFERV SYSYTDLLTKNIELDFDVIS >gi|308165699|gb|AEHO01000014.1| GENE 42 27886 - 28773 848 295 aa, chain - ## HITS:1 COG:lin0227 KEGG:ns NR:ns ## COG: lin0227 COG0030 # Protein_GI_number: 16799304 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Listeria innocua # 7 288 5 285 295 205 45.0 1e-52 MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPG IGSLTEQLLLAGAKVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATD IADYFDVNRPIIVVANLPYYITTPIILKLMHSPVKISQLTLMMQKEVAERISASHKSKAY GPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAF SQRRKTLNNNLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR >gi|308165699|gb|AEHO01000014.1| GENE 43 28763 - 29326 656 187 aa, chain - ## HITS:1 COG:SP1990 KEGG:ns NR:ns ## COG: SP1990 COG1658 # Protein_GI_number: 15901813 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Streptococcus pneumoniae TIGR4 # 6 184 2 183 186 138 43.0 7e-33 MELQNKKRFDAVVIVEGRDDTKRLKQYFPGIETIETNGSEVSQQTITTIVNIAKKRDVII FTDPDFNGERIRKIILKAVPTAKQAFITRKEGEPTKRGNSLGVEHASKAALQRALSDLHE VDITANAISIQQYDELGLGMGDNARKLREKVGIALGVGYGNAKQFYKRLAMFGISYNKLK EVVKHVK >gi|308165699|gb|AEHO01000014.1| GENE 44 29310 - 30083 724 257 aa, chain - ## HITS:1 COG:L87336 KEGG:ns NR:ns ## COG: L87336 COG0084 # Protein_GI_number: 15672669 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Lactococcus lactis # 1 257 1 257 257 238 44.0 1e-62 MELLDSHMHLNDEPFRGKEEYYLKRAKQLNVVSGVVAGQDAEFNRRAIELAERFSNLYAT VGYCPDVATKVNAKAYDVLIKELTKDKVVALGEIGLDYYWDESPRSVQRDVFAQQLDLAY QIKKPVNIHTRDAFEDTYDILSQSKVGEYGGIIHNFNGDPDYLKKILDLGMYVSFSGVVS FTKAVDVHASAKAVPLDRFLIETDAPYLTPKPYRGRQNETGYVYYVAQAIADIKNISLEE VALHTFNNAMRIYGITK >gi|308165699|gb|AEHO01000014.1| GENE 45 30083 - 32062 2194 659 aa, chain - ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 538 4 542 549 728 65.0 0 MAEKKTFYITTPIYYPSGKLTIGNAYTTVAADAMARYKRNEGFDTFFLTGTDEHGLKIEQ KAEAQGIKPQEFVDNMALSYKKLWKLLDISYDKFIRTTDQEHVLAVQKIFERLLKQGDIY LGEYQGWYSVEDEEYFTESQLAEVYKDDSGKVIGGKAPSGHEVKLIKEPSYFFRMSKYAD RLLEYYKENPQFILPNSREKEMINNFIKPGLEDLSVTRTTVDWGIPVPSDPKHVVYVWID ALSNYISALGYSSEDDSLFKKYWPADVHLVGKEIVRFHTIYWPIMLMALDLPLPKQIFGH GWVLMKDGKMSKSKGNAVYPEMIVNRYGLDALRYYLMRAIPFGSDGIFTPEDFVERVNFD LANDLGNLLNRTISMINQYQDGLVDPVSTTEDEYGKQLKELANNTINLYHEQMDALHFSK ALDTIWGLISRANKYIDETTPWVLNKEGKVDKLKCVMSNLAESLRLIALLIRPIMTQSPV HIFEQLGLSLDDANATSLCWGAYGWQNYVTKNPKPIFPRLNNEEEIKYIKQEMAKAKPKK STRSEQKQTNSEITIDDFDKVQLQVAEILAVAQVKGSNKLLAFTLDLGEKEPRQILSGIA AFYPEPQELVGKKVLAVTNLKPRKMLGQVSQGMLLSSEKNGVVKLIIVSNEHENGALLG Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:46:31 2011 Seq name: gi|308165644|gb|AEHO01000015.1| Lactobacillus iners LactinV 09V1-c contig00041, whole genome shotgun sequence Length of sequence - 35830 bp Number of predicted genes - 55, with homology - 53 Number of transcription units - 19, operones - 12 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 30 - 89 12.2 1 1 Tu 1 . + CDS 183 - 347 63 ## + Term 535 - 587 -0.6 - Term 298 - 370 13.1 2 2 Op 1 . - CDS 377 - 1480 1170 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 3 2 Op 2 . - CDS 1490 - 1912 471 ## gi|309805024|ref|ZP_07699081.1| hypothetical protein HMPREF9213_0813 4 2 Op 3 . - CDS 1928 - 2182 156 ## ELI_1319 hypothetical protein 5 2 Op 4 . - CDS 2234 - 2389 140 ## gi|309805038|ref|ZP_07699095.1| XkdX family protein 6 2 Op 5 . - CDS 2364 - 2699 339 ## gi|309805021|ref|ZP_07699078.1| conserved hypothetical protein 7 2 Op 6 . - CDS 2703 - 2972 134 ## - Prom 3037 - 3096 7.9 8 3 Op 1 . - CDS 3113 - 4990 1434 ## gi|309805009|ref|ZP_07699066.1| hypothetical protein HMPREF9213_0817 9 3 Op 2 . - CDS 4971 - 5195 262 ## gi|309804999|ref|ZP_07699056.1| hypothetical protein HMPREF9213_0818 10 3 Op 3 . - CDS 5198 - 7189 2142 ## MCCL_0934 hypothetical protein 11 3 Op 4 2/0.000 - CDS 7186 - 8010 727 ## COG4722 Phage-related protein 12 3 Op 5 . - CDS 8014 - 10935 2540 ## COG5412 Phage-related protein 13 3 Op 6 . - CDS 10953 - 11267 421 ## FI9785_840 hypothetical protein - Prom 11314 - 11373 2.6 14 4 Tu 1 . - CDS 11378 - 11755 410 ## Spy49_1471c hypothetical protein - Term 11766 - 11810 6.4 15 5 Op 1 . - CDS 11816 - 12127 426 ## FI9785_835 hypothetical protein 16 5 Op 2 . - CDS 12130 - 12702 681 ## FI9785_838 hypothetical protein 17 5 Op 3 . - CDS 12719 - 13099 397 ## gi|309804265|ref|ZP_07698342.1| hypothetical protein HMPREF9214_0283 18 5 Op 4 . - CDS 13099 - 13467 479 ## gi|309804204|ref|ZP_07698281.1| phage protein, HK97 gp10 family 19 5 Op 5 . - CDS 13451 - 13855 509 ## FI9785_834 hypothetical protein 20 5 Op 6 . - CDS 13872 - 14744 1263 ## FI9785_832 hypothetical protein 21 5 Op 7 . - CDS 14758 - 15363 857 ## gi|309804991|ref|ZP_07699048.1| conserved domain protein 22 6 Op 1 . - CDS 15479 - 15739 235 ## gi|309804275|ref|ZP_07698352.1| hypothetical protein HMPREF9214_0288 23 6 Op 2 . - CDS 15816 - 16073 219 ## gi|309804242|ref|ZP_07698319.1| hypothetical protein HMPREF9214_0289 - Prom 16095 - 16154 2.8 24 7 Op 1 . - CDS 16194 - 16478 416 ## gi|309804308|ref|ZP_07698385.1| hypothetical protein HMPREF9214_0291 25 7 Op 2 . - CDS 16483 - 18075 1430 ## COG5585 NAD+--asparagine ADP-ribosyltransferase 26 7 Op 3 . - CDS 18068 - 19498 1028 ## FI9785_828 bacteriophage portal protein 27 7 Op 4 . - CDS 19512 - 20741 1157 ## LGAS_0605 phage terminase large subunit 28 7 Op 5 . - CDS 20704 - 21210 567 ## LDBND_p002 putative transposase - Term 21224 - 21259 3.1 29 8 Op 1 . - CDS 21270 - 21665 583 ## LCRIS_01740 hypothetical protein - Term 21668 - 21712 7.2 30 8 Op 2 . - CDS 21715 - 21903 246 ## gi|259501593|ref|ZP_05744495.1| HicA family toxin-antitoxin system - Prom 21986 - 22045 10.4 - Term 22613 - 22643 -0.3 31 9 Tu 1 . - CDS 22647 - 23129 518 ## LGAS_0597 phage related protein - Prom 23217 - 23276 4.7 32 10 Op 1 . - CDS 23354 - 23812 502 ## COG4570 Holliday junction resolvase 33 10 Op 2 . - CDS 23820 - 24515 267 ## gi|309805003|ref|ZP_07699060.1| hypothetical protein HMPREF9213_0843 34 10 Op 3 . - CDS 24502 - 25065 440 ## gi|309805015|ref|ZP_07699072.1| hypothetical protein HMPREF9213_0844 - Prom 25086 - 25145 3.5 35 11 Op 1 . - CDS 25193 - 26116 587 ## LVIS_1129 hypothetical protein 36 11 Op 2 . - CDS 26128 - 26637 613 ## LJ1449 Lj928 prophage protein 37 11 Op 3 . - CDS 26697 - 26900 274 ## LGAS_0582 hypothetical protein 38 11 Op 4 . - CDS 26903 - 27784 1004 ## LJ1450 Lj928 prophage replication protein 39 11 Op 5 . - CDS 27771 - 28139 391 ## gi|309804990|ref|ZP_07699047.1| hypothetical protein HMPREF9213_0849 - Prom 28165 - 28224 5.0 40 12 Op 1 . - CDS 28256 - 28405 65 ## gi|309805017|ref|ZP_07699074.1| hypothetical protein HMPREF9213_0850 41 12 Op 2 . - CDS 28424 - 28579 166 ## gi|325912787|ref|ZP_08175166.1| hypothetical protein HMPREF0523_0434 42 12 Op 3 . - CDS 28604 - 28972 329 ## gi|325912759|ref|ZP_08175138.1| hypothetical protein HMPREF0523_0435 43 12 Op 4 . - CDS 28999 - 29796 794 ## COG3645 Uncharacterized phage-encoded protein 44 12 Op 5 . - CDS 29793 - 30200 274 ## COG3617 Prophage antirepressor 45 12 Op 6 . - CDS 30203 - 30343 138 ## gi|312873820|ref|ZP_07733864.1| putative protein CopG - Prom 30444 - 30503 8.9 + Prom 30320 - 30379 7.7 46 13 Tu 1 . + CDS 30493 - 30636 166 ## gi|309805012|ref|ZP_07699069.1| conserved hypothetical protein + Term 30833 - 30866 5.1 - Term 30577 - 30624 -0.8 47 14 Tu 1 . - CDS 30638 - 30808 186 ## gi|309805019|ref|ZP_07699076.1| conserved domain protein 48 15 Op 1 . - CDS 30866 - 31090 213 ## gi|312873803|ref|ZP_07733847.1| DNA-binding helix-turn-helix protein 49 15 Op 2 . - CDS 31065 - 31214 187 ## gi|309804989|ref|ZP_07699046.1| conserved domain protein - Prom 31313 - 31372 7.5 + Prom 31267 - 31326 9.1 50 16 Op 1 . + CDS 31357 - 32049 838 ## HMPREF0837_10283 bifunctional S24 family peptidase/transcriptional regulator 51 16 Op 2 . + CDS 32107 - 32607 582 ## SERP0074 hypothetical protein + Prom 32633 - 32692 6.4 52 17 Tu 1 . + CDS 32801 - 33175 410 ## LAR_0916 hypothetical protein + Term 33180 - 33222 4.0 - Term 33404 - 33432 -1.0 53 18 Op 1 . - CDS 33433 - 33954 543 ## UUR10_0034 hypothetical protein 54 18 Op 2 . - CDS 33957 - 34421 489 ## COG3600 Uncharacterized phage-associated protein - Prom 34503 - 34562 9.0 + Prom 34479 - 34538 10.6 55 19 Tu 1 . + CDS 34558 - 35679 967 ## COG0582 Integrase + Term 35680 - 35710 2.0 Predicted protein(s) >gi|308165644|gb|AEHO01000015.1| GENE 1 183 - 347 63 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAGYTTFENPLTQININTVIFVNAITLYVLVICILYPQLRIEQQIKKHSVSTTY >gi|308165644|gb|AEHO01000015.1| GENE 2 377 - 1480 1170 367 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 1 211 150 347 444 103 33.0 6e-22 MKKNAYVVDVSSYNPSDLSTYKKCGATMAIVKVSEGVAYRNPKGAAQIASAKSLGMECAG YFFCTFSNDLNGARAQALYAVESAKIIGLPGGSYLATDWETGTGASYNNVSGGKSKNTQA VLLTMDVIASAGYKPLLYSGAYLLKSNIDTSVILSHYPASLWVASYPTSNAVSTANMNYF PAIPGVALWQFTDNWNGMHTDASIAVIDSDNKNNAEGDEDMGWHPEINVTELGRFKVTRP DGAQLYKDSDLTIPIAGAVKPAGGTYKIFKARNGAVNAGGEQWFSQADGLTKVNPLSVNQ KAKGIICKIIADDAYTQNETTPNCAGIKYLPAGSSWKVISKKGDYLEVGGEKDGRYVLAS KCKIILW >gi|308165644|gb|AEHO01000015.1| GENE 3 1490 - 1912 471 140 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805024|ref|ZP_07699081.1| ## NR: gi|309805024|ref|ZP_07699081.1| hypothetical protein HMPREF9213_0813 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0813 [Lactobacillus iners LactinV 09V1-c] # 1 140 1 140 140 241 100.0 1e-62 MINIKNVTEWLPWVSIVILFIAQKIASYYDFAQKNDPDIATKMKHIGLIAKWAVADQSRY ADKAGAAKFEDAVDKVVKETGVSTTLAKGAVQASYIDLKDKKDSQVPAVVPQASNPIVTE NALKPVEDTSATVEDLDPHR >gi|308165644|gb|AEHO01000015.1| GENE 4 1928 - 2182 156 84 aa, chain - ## HITS:1 COG:no KEGG:ELI_1319 NR:ns ## KEGG: ELI_1319 # Name: not_defined # Def: hypothetical protein # Organism: E.limosum # Pathway: not_defined # 21 84 37 100 102 67 40.0 2e-10 MQFLIKRHDDEKNHVDEKEHLVEEALLAILHDKIYTVGTEIIRQGEISTEDMNNLEHLYE PYKALGGNGTCKKIMNKINELPIK >gi|308165644|gb|AEHO01000015.1| GENE 5 2234 - 2389 140 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805038|ref|ZP_07699095.1| ## NR: gi|309805038|ref|ZP_07699095.1| XkdX family protein [Lactobacillus iners LactinV 09V1-c] XkdX family protein [Lactobacillus iners LactinV 09V1-c] # 1 51 1 51 51 69 100.0 9e-11 MMSTEELYKQILINLYQILKVMSVQEVKQFVEAGAITTADFKEITGVEYVQ >gi|308165644|gb|AEHO01000015.1| GENE 6 2364 - 2699 339 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805021|ref|ZP_07699078.1| ## NR: gi|309805021|ref|ZP_07699078.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] # 1 111 1 111 111 196 100.0 4e-49 MQQYNYYFSNDTIPFDTITTTHEYKENHYPIVVTQPDPSLKEPKYDWAKGAWIENAAESQ GEKIHALQEEVKKFQSVIAQLTSIAQTQKMLATLIATKKGESTNDVNRRAL >gi|308165644|gb|AEHO01000015.1| GENE 7 2703 - 2972 134 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSYNDQTGKFEDDSHTNKVYCKDLVTFYDDYGKLKSSIEFTERNEKYSTVTRNIPISIQD NFLIFDFGKTGIELPRQTSRFAYYIERSK >gi|308165644|gb|AEHO01000015.1| GENE 8 3113 - 4990 1434 625 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805009|ref|ZP_07699066.1| ## NR: gi|309805009|ref|ZP_07699066.1| hypothetical protein HMPREF9213_0817 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0817 [Lactobacillus iners LactinV 09V1-c] # 1 625 1 625 625 1021 100.0 0 MTIQNPRLPELTLDLQKTTVFVSRPFRLTQADKGYIQPFRLTNSWSAYDVSEINLNFAAT KPDGQIIDIKKEPNRFKQENGIWLFYLPEEIAQAVGNVTAYFYVTDSSDTILATTTKFGY EISARYGDDVKSNSYISEIEDMEKQFQEYLANAKAQVNAQNDLTNEYKQKLSQILSEMSD KVATWLSTKTAAIDQDIKNRQDNLDRLNADYQAKYNELVASWQNKIAEINTDWEQRKAEI ISEAKNQRTDISNEWESLKSKFKTDRDSAISQANSDFKAKLDTIQADWNNQKSKLEQEIT DFKTNLENKVQVVTNKVSDLVTHTYPDLSSKTDAISTKIAQLKEEFSKIDFSTYATKEDL PDFSKFIVQNKILDRENKVTYVNHAFVKRDNGGWGVFMGKEDCTPIRVRDLLKKKLPKID ERIGNLQTTKADKSELSNYATKTDLTAKADKSELSNYATKDELNNHQVDLSNYATKTDLT AKADKSELGNYATKSDLDNKVDRSDLNNYAYETQKELSNKANSSELDSYATKGDLDNKAD KSELSNYAKTGDITTAIQNVRIKQDFLDGSNNYASKMVYSPKWSDGYLTFDMSDSYATYK TKTLTDRVSAMQEQITQLQLEVKKK >gi|308165644|gb|AEHO01000015.1| GENE 9 4971 - 5195 262 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804999|ref|ZP_07699056.1| ## NR: gi|309804999|ref|ZP_07699056.1| hypothetical protein HMPREF9213_0818 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1135 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9213_0818 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1135 [Lactobacillus iners LactinV 03V1-b] # 1 74 1 74 74 108 100.0 2e-22 MSFFKDADTIDLAIIAKEYEKINREVMHENLVLHIQLRQHTEREKELLKILKEKIPEFYE VLNKGDEKNDNTES >gi|308165644|gb|AEHO01000015.1| GENE 10 5198 - 7189 2142 663 aa, chain - ## HITS:1 COG:no KEGG:MCCL_0934 NR:ns ## KEGG: MCCL_0934 # Name: not_defined # Def: hypothetical protein # Organism: M.caseolyticus # Pathway: not_defined # 60 422 70 421 724 171 31.0 1e-40 MRLLLYDNHERLLAIVNGYGTIEREINVYDQLNVEVPPTRKNIDLLKKTMKIGVPYPLTK KYQLFKVEKVSLNSKPLTITAIDSAADDLDTQYLIRDKRFINKPLSQVLPVIFEKTTWKY KQFAPDNSDIISFYRISPKEALKKVEGIFGTEVRFLYSIQGNKVIDKTCEVYEQIGKSTN IRLVQGINVTNVDYTQDQTRLYTAAVGRGAGIQNTDNDGNATGGYSRSIEFTNISWSKAN GDPVDKPVGQDYVEIPEATQKYGWLDENGQCHPRIAKFEFPDEQNVNKLLKETYDKLLSL SQPQIIVETTVAKIGQRVNLGDEVTVVIYEPYKLTYKARVIKVEENPDNDSLSAVTVGFT SVERQAEREFQQEQALVDTKTDFNQALGDTKTDFNQALGDTKTDFNQALDNTKTNFNQEL ENQKDESERRYLEHNRKFTELQQETSDKIKSTKESMDSELSAHQQAINEQMEKAKKAIRA VEEKTAKEIDDARDSIMTFVSRNSEGAPLEFYDEQGKLVKGIPPVSTIKSKDGKFELNAS GFNFGNHVLGGNGELYADGIYGNKIEGYSIIGAHISGGTIQGVTIEGDSYFRSSGAGGIA VVSGDSGFSFGTCAMGSGHISIGTGNWNGTDFYTSGDVICSSVVVGGMALTSSDVAKLQQ LKG >gi|308165644|gb|AEHO01000015.1| GENE 11 7186 - 8010 727 274 aa, chain - ## HITS:1 COG:SPy0995 KEGG:ns NR:ns ## COG: SPy0995 COG4722 # Protein_GI_number: 15675003 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 4 227 2 218 259 63 28.0 5e-10 MKQYEFHDLDVNTRGDPSWLPPEAMFIISDGIGIPLEDLIDGYQTLTVSGRELSVYEVNT QSVDNEDGVMFLSANRPVREIEVSYKLEAEKDEEFRAKYQLLNYYLSNKQFDFYFYDDDQ YQWTGTVSSTEKPEPGKNIVKSSFTITCNDPYKRLRKSVIYTNRDGMLRITEPALYLTTP DLISIYLEDSSSTVQVSNGRQTISLTGVFNPNDNIKIKISTDSDKQSDIILNGQSHLELL NLDSDFENFALKRDDIVTVSPHADLSIKFRRKEL >gi|308165644|gb|AEHO01000015.1| GENE 12 8014 - 10935 2540 973 aa, chain - ## HITS:1 COG:SPy1448 KEGG:ns NR:ns ## COG: SPy1448 COG5412 # Protein_GI_number: 15675357 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 459 902 274 701 785 139 29.0 2e-32 MALEARAKLVLDDSQFTKTCKNAESSLNGLARETDRGVSSFKGFAIAGATMAVVSRAISV VKDNLGSAIRRFDTLNKYPVVMKALGYSTKDVANSTKLLVKGIDGLPTSLQDITSVAQQL APLTGSAKKAAQSAVALNNAFLASGASGADASRGLLQYTQMLSTGKVDLMSYRTLMETMP IALRKVANSFGFTGKSAENDLFKALQSGKITMDQLNDRFIKLNKGVGGFAELAHKNSAGI QTSFENLKNTVVKNLANMLTAIDKGFKEAGLGSIAKVLDSMKANINSAFTAITPVVTKAT KVILKLVTGLQKLSGKPWFQALAVGAGTFSVATKGMLKVARAARATKGALEAFKAGWKAL KVAGSAAEGVKEAKVALEGFSKTSKVATAIQWAFNVAVSANPLVLIPAAIAAVVAALVWF FGFTNTGKNMWSGFLSWLGQAWNAIVNTAQVVWNGLGQFFGNLWNGIVNVTKTVWDGLKS FFGPIVDTIKNVWNGMAQFFSGLWQGIVSAVAPIWQGFITSIQPIIDAFKNLWSALGDFF STLWQGIVTVAGVIWQGLLIVFSPIIQALQIAWQGFSTVIGVVWQGIQVVISTAVAIIRA LITNFLNGVQTIWNAVWPVLGPVVRAIWQGIKIAISTAIKVISTIISTTLNTIRTIWNAV WGVIGTLVKTIWNMISTTISTTINVIAGIIRAITAAIKGDWSGVWNAIKGIASTIWNGIK SLASTLFNGIKAVIVAVWNAIKGVTSSIWNGIRGVISSVWNGIKGVITAGVNVVKSIFTG AMNVLKGVASTIWGAIKGVFNVGVSFIKSIVHFDLGSAGRHIMNSFLNGLKAVWNTVKNF VGGIGNWIKKHKGPESYDKRLLIPAGRYIMGGLAQGLKDNFTLVKDQVNNVTGYFEDLTV SLPSVDSDQFNASLDSLNNRTYAAVSGAINQEISFQNKPAYVTLSLGGSDYQGFVDDISK QQDMSVALRKKRL >gi|308165644|gb|AEHO01000015.1| GENE 13 10953 - 11267 421 104 aa, chain - ## HITS:1 COG:no KEGG:FI9785_840 NR:ns ## KEGG: FI9785_840 # Name: ps137 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 98 10 110 115 64 40.0 1e-09 MEAYALKDAYLSKLAAQAAFFNQVMKSTKGSGSNTRLVYDRFDKLYDYEKAVTKIRSQFE PDFKTTEEKTEFNFAEKLREFDALKKAGKIKAWADRTEAERKIL >gi|308165644|gb|AEHO01000015.1| GENE 14 11378 - 11755 410 125 aa, chain - ## HITS:1 COG:no KEGG:Spy49_1471c NR:ns ## KEGG: Spy49_1471c # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_NZ131 # Pathway: not_defined # 6 111 1 106 119 78 35.0 8e-14 MAAPKLNLNINGNDVELVFGVRFVHELNKAFGIERDGFNIGMGFTLILPPLLQYDPDALA KVIYCASYKSSSRPTMDQIYDSLDELDDLEQTFDEVMGRLKASSATKHTLATLTVKEQTE EQKSN >gi|308165644|gb|AEHO01000015.1| GENE 15 11816 - 12127 426 103 aa, chain - ## HITS:1 COG:no KEGG:FI9785_835 NR:ns ## KEGG: FI9785_835 # Name: ps132 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 100 1 100 105 94 47.0 1e-18 MRYDSKVKFYSESKKHYNPKTSKYEGGAELVLETYANVTDLGLTRQKKLFDSIKIEQLTV RLIESCPKSWAYLTIDNQPKKYKLSKQLNSLKGTAIIIEELSE >gi|308165644|gb|AEHO01000015.1| GENE 16 12130 - 12702 681 190 aa, chain - ## HITS:1 COG:no KEGG:FI9785_838 NR:ns ## KEGG: FI9785_838 # Name: ps135 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 2 190 3 190 191 147 47.0 2e-34 MAQPQKINGSNVLGLFRLEKNAATEKAAIINYQTSLDFEFKRDSDSTSTKTGSLSTSGSL ETTIKFSFVDNISKVSDDIRTSILNAEPAELWQVQLDRKNSEGKYFGCYVRGTVSSDSAK NDDGDNSTRECEFKCDGTPQYGWTDLDATIKEALSYAYQGIGVISDSDKQGGGKAYNTIT DRGLGSATGK >gi|308165644|gb|AEHO01000015.1| GENE 17 12719 - 13099 397 126 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804265|ref|ZP_07698342.1| ## NR: gi|309804265|ref|ZP_07698342.1| hypothetical protein HMPREF9214_0283 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0826 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1143 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9211_0854 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0266 [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9214_0283 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0826 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1143 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9211_0854 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0266 [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 126 1 126 126 239 100.0 6e-62 MHISLALFNYFFAKCQELGFDTYEVLPDDTVPYPFVRVNQATLTGGSTKTGFAGEITINL DLFGTLYQKLELSEMQQKLEAVGLTGIWLSDTSLVAVVDDYQAVNLLDTSTTTPLNHTNL SFKFRY >gi|308165644|gb|AEHO01000015.1| GENE 18 13099 - 13467 479 122 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804204|ref|ZP_07698281.1| ## NR: gi|309804204|ref|ZP_07698281.1| phage protein, HK97 gp10 family [Lactobacillus iners LactinV 11V1-d] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 09V1-c] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 03V1-b] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 01V1-a] phage protein, HK97 gp10 family [Lactobacillus iners SPIN 2503V10-D] phage protein, HK97 gp10 family [Lactobacillus iners UPII 60-B] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 11V1-d] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 09V1-c] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 03V1-b] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 01V1-a] phage protein, HK97 gp10 family [Lactobacillus iners SPIN 2503V10-D] phage protein, HK97 gp10 family [Lactobacillus iners UPII 60-B] # 1 122 1 122 122 218 100.0 1e-55 MTFQIKWDGLDQLTEELRTMASGKALEKASVALGSQWQKEARAMERAKYTHGYWTGNQQR NTLVYWENGKKTIVLDPKTEYSVYTEYGTRKMDAMPVFKPTLDMTKKRAPSVIEYYLKKD IK >gi|308165644|gb|AEHO01000015.1| GENE 19 13451 - 13855 509 134 aa, chain - ## HITS:1 COG:no KEGG:FI9785_834 NR:ns ## KEGG: FI9785_834 # Name: ps131 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 112 1 113 118 111 55.0 9e-24 MDYLANIKALLMLPDSAKDDLINVIIDNTKRALRVRLGLSASDTVPDELSYIVVEVSVRR YNRLKNEGMVSYSQEGESIAFNSNDFADFEEDIKAWKDKNNKANEVRFINPYARALSNRY SSRTNGRLLNDFSN >gi|308165644|gb|AEHO01000015.1| GENE 20 13872 - 14744 1263 290 aa, chain - ## HITS:1 COG:no KEGG:FI9785_832 NR:ns ## KEGG: FI9785_832 # Name: ps130 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 288 1 288 288 248 48.0 2e-64 MTVDANTIKTTDLVAQSIDFTEQFSQGLSTLLNVLGVTRKQALSQGSVIKLYKTEGTLVS GDVAEGDVIPLSKVTRKVSSTQELKFGKWRKVTTAEAIQKAGFNQAVQATDQKLLRLVQE QVKTNWFNFLTTATGTTTTNGVGFQAAVASAIGQFNVVWEGYGVQPVAFVNPLDVYTYLA KAPVLTQTAFGLNYIENFLGFSAVVLSASVPAGKIYVTAPDNINLAYADLHGDLSGAFNF TTDQTGLIGVAHNELLNALSYETVVTTASILYPEISAGIIVSEIKNEASK >gi|308165644|gb|AEHO01000015.1| GENE 21 14758 - 15363 857 201 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804991|ref|ZP_07699048.1| ## NR: gi|309804991|ref|ZP_07699048.1| conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners LactinV 09V1-c] # 1 201 2 202 202 288 100.0 2e-76 MEDNNLKNNQNTVDPKDSDVNPKDSDVNPKDDKGKSKTGDVVSKLKERLSKKTAENSSLA DQVADLRVQLQKFTQQDKANDEQASELDEAKKQLEALQLENQRIKASRQVEKDLQDAGLL SYSSDGVLEMLVGDTDKVTTQRTMAFIKFAQSLETGIRKEYHTGHTPRTSGKASLTRDEI NKIADPAKRLEAIKNNLSLYN >gi|308165644|gb|AEHO01000015.1| GENE 22 15479 - 15739 235 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804275|ref|ZP_07698352.1| ## NR: gi|309804275|ref|ZP_07698352.1| hypothetical protein HMPREF9214_0288 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0831 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0859 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0271 [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9214_0288 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0831 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0859 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0271 [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 86 1 86 86 147 100.0 3e-34 MLDIKTAQDKAKQAIIDNYNLSKLISEKDISLNIVDVYYTFSFEISSNKLPKPEMVGYPD YVQVNCETEEVHFINSYLYDDLISKL >gi|308165644|gb|AEHO01000015.1| GENE 23 15816 - 16073 219 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804242|ref|ZP_07698319.1| ## NR: gi|309804242|ref|ZP_07698319.1| hypothetical protein HMPREF9214_0289 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0832 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0860 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0272 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9214_0289 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0832 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0860 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0272 [Lactobacillus iners SPIN 2503V10-D] # 1 85 1 85 85 139 100.0 7e-32 MIDKDKAIEIAQKYAIDHLLVRNCKIEDLQATVIDDYFTIKVEPIEVTQDTIVYTNKSNL VTVDKRTGDTYLIDEDGYKPMVSRL >gi|308165644|gb|AEHO01000015.1| GENE 24 16194 - 16478 416 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804308|ref|ZP_07698385.1| ## NR: gi|309804308|ref|ZP_07698385.1| hypothetical protein HMPREF9214_0291 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0833 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1149 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9211_0862 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0274 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9210_0195 [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9214_0291 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0833 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1149 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9211_0862 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0274 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9210_0195 [Lactobacillus iners SPIN 1401G] # 1 94 1 94 94 162 100.0 8e-39 MITLKFMSIELLEDNLNEWVYSIYTDYQEGQIAINKHNFDGKLTSFEKASKRVRIKKETV EYEIYYRIVKLMKSQPGIKEYYWLHSTKKIEPLV >gi|308165644|gb|AEHO01000015.1| GENE 25 16483 - 18075 1430 530 aa, chain - ## HITS:1 COG:SPy0975 KEGG:ns NR:ns ## COG: SPy0975 COG5585 # Protein_GI_number: 15674985 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 5 309 8 306 541 93 27.0 1e-18 MTKVYWQQRMQGEKSFAKWIEQTENRLFDYYQVRYNELLEHLNAEIAKEYAALTRSTGMN LDLAKQTVSNLDIKAYSQLAKKVVREAHEARKNGNPKAFKGYSAEINRRMKIYNATMRIN RLELLKARLATWLLEVNAELDADLRKALSDGYVEHVTKQAGLLGTTVSSSAIDQGIQETI AYMYDNATFSDRIWKNQDVIKASIDKVVSQGSLGGYGLEKMINQLHKFTNANYSNAKRIV RTEMTRVMDKAQEDVFKKADVKLVFWQVEKKPCAACLAIHDNDVGYGKGVYPIDDSPKPV EDTHPNCRCLRSAFTEYEAWQLQWAKSKDKGVYLDQYGRVRYSDGRPVEDYLEAEKLYNQ DLKNKSKKAKPAGAIVYDSSLSLSEKLKNKELEKSRLEAKRQKTFAQKYYATLRNYKRDF LVSKIAKNTGISSNIVIKAIEHVLDSKYNLDIDGKMVFQTFEPDADMAHSLQNLYLNNYD EADILLLHHENLEAYYMDKKGMSYVKAHKLTNKRYDYQDKIDQLKEEGKR >gi|308165644|gb|AEHO01000015.1| GENE 26 18068 - 19498 1028 476 aa, chain - ## HITS:1 COG:no KEGG:FI9785_828 NR:ns ## KEGG: FI9785_828 # Name: ps126 # Def: bacteriophage portal protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 2 450 3 459 468 442 50.0 1e-122 METLGTKGQVLSNGMFVYPKDELMDETEVNAFIDKNRGFTAKIYDRNMQYYLGKHDILKK TNATGIELNKIVDNIPKYLVDTYNGFFTGISPKITLDEDSLNNNLQNWNRSNSFFDKLSE ISKQVDIYGRSYAFIYQNESADTRVAVVPPTQCFIVYDDTIEHEPLAFVRYYKNSENLLQ ADIYYGNATQTYSEGKLLDLGLKSVYGMVPAVEFFENEERQGLYTDCISMIDALDDTLSQ KQDTIEYFANEYMYVLGGGIDLNEEELSYMRTHRLINVPTANAADIKIGFLERPDGDNVQ ENQLQHLNDKIYQITGIPNLSDSNFAGNASGVAIRYKLLAMENKASNKERKFTQALRALY KVVFSIDSVINVSDAWEDLKFKFTRNLPANLADEASTANSLNGIVSKETQLGALSIVDDP KAEMERMEEEQDQQLKKSLEVTGADYEKLDDTNQEQPEANQKSIKSPFSNEEVDND >gi|308165644|gb|AEHO01000015.1| GENE 27 19512 - 20741 1157 409 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0605 NR:ns ## KEGG: LGAS_0605 # Name: not_defined # Def: phage terminase large subunit # Organism: L.gasseri # Pathway: not_defined # 1 396 8 404 414 456 56.0 1e-127 MALQDLLTKKQIKVLHSYLADDWKILINAGAVRSGKTYINNYLFLLELRRIAKLAMENND EHPQYIIAGFSSNSIFNNIINSIGSQFGIMLTADRHGHYHLFGVDIVPAYTGSLRGIGGI RGMTSYGAYINEASLSTHAVFQEIKQRCSKEGARIICDTNPDIPTHWLKTEYIDNVDSNA GIKYFMFTIDDNPTLPKDYVVSLKASTPKGMFYDRAIKGLWVTGEGVVYRDFDQSTMTID RDKLPTDLTYYVGVDWGYEHTGTLIVFADDSQGNTYLIKEHAHKHRFIDYWVDLAHDVQQ KYGSTIPFWCDSARPDNLNEFLTHGIRAYNANKAINSGIEAVGSLMKAKHFFVVKNSADN WFNEVYQYIWNEKTGEPVKENDDSMDAMRYAIYNQHNKAKINLQRNTLF >gi|308165644|gb|AEHO01000015.1| GENE 28 20704 - 21210 567 168 aa, chain - ## HITS:1 COG:no KEGG:LDBND_p002 NR:ns ## KEGG: LDBND_p002 # Name: not_defined # Def: putative transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 10 156 3 157 173 85 36.0 8e-16 MLLVMGRALYKEWLDKDKLVLLQGWKRAGLTDAQISQNMGVSVFTLDKWKRNYSQIRQAL KRGRSEINYIVENALLKKALEGNVTAMIFFLKNNWRDKYNDSQLSKEERELVLANIQKTK AEARIKEAKAIIAERLGDESNAKLEELLNKIVQGDNSGTTRFIDKETN >gi|308165644|gb|AEHO01000015.1| GENE 29 21270 - 21665 583 131 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01740 NR:ns ## KEGG: LCRIS_01740 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 4 128 3 127 131 101 42.0 1e-20 MSNNLLIYPIIVTECHDEAGHYYGAISPNIPGMVTDGQTLQELVIHAEDAIATMISGTKY PEVQDLKEWTLGPNDFVVYVTVNMLKWEAQHEKTVRRNITLPEGLNNWAKDNKINVSKVT TEALRSMQNTN >gi|308165644|gb|AEHO01000015.1| GENE 30 21715 - 21903 246 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501593|ref|ZP_05744495.1| ## NR: gi|259501593|ref|ZP_05744495.1| HicA family toxin-antitoxin system [Lactobacillus iners DSM 13335] phage protein [Lactobacillus iners AB-1] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 11V1-d] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 09V1-c] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 03V1-b] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 01V1-a] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners SPIN 2503V10-D] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners UPII 60-B] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners SPIN 1401G] HicA family toxin-antitoxin system [Lactobacillus iners DSM 13335] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 11V1-d] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 09V1-c] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 03V1-b] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 01V1-a] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners SPIN 2503V10-D] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners UPII 60-B] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners SPIN 1401G] # 1 62 1 62 62 100 100.0 3e-20 MPIKPSKMVRLLLKAGFKEVPKGGGHRRFRHPDGRMTEVPMHGKELTPYTQRKILEQAKI KL >gi|308165644|gb|AEHO01000015.1| GENE 31 22647 - 23129 518 160 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0597 NR:ns ## KEGG: LGAS_0597 # Name: not_defined # Def: phage related protein # Organism: L.gasseri # Pathway: not_defined # 3 157 5 158 176 180 56.0 2e-44 MCDLGLIPDYYETARTAKKFLNRNLQHYLNLCGMHRNQLKSPQLSFAPGSTYQNGVEKRT IAELQNEMDVTEPAKRVVSAIYRSMDNCTDTMLKPYRKILLGTYIEGKTISQLSIETHLS EKSISNKKASALCEFADRLEYWKRFYNCASEIPYLIVEKR >gi|308165644|gb|AEHO01000015.1| GENE 32 23354 - 23812 502 152 aa, chain - ## HITS:1 COG:lin1248 KEGG:ns NR:ns ## COG: lin1248 COG4570 # Protein_GI_number: 16800317 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Listeria innocua # 1 147 1 134 145 70 35.0 9e-13 MKTFYLVVPGEPVGKARPRVTRFVTYTPKKTLEYENRIRHYASLYNLAPITDQCSLKISA YFSVPKYYSKKRKANCLSGLEKPTKKPDIDNVAKSVLDALNPKFKVNKATRHRVMISLGI YEDDKLVTDLEVHKFYSVTPRTEIEITWEGDE >gi|308165644|gb|AEHO01000015.1| GENE 33 23820 - 24515 267 231 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805003|ref|ZP_07699060.1| ## NR: gi|309805003|ref|ZP_07699060.1| hypothetical protein HMPREF9213_0843 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0843 [Lactobacillus iners LactinV 09V1-c] # 1 231 1 231 231 446 100.0 1e-124 MLKNEKLGLIEESEENKTLIIKSKIRTFRGIMLEYIEKLIEKYGQDPWNEDDIDYKMMEL AREKLEMWQSRIRACKSIDVKHDVTKHYTYRAELKNANSIEKKIIKLLAKGKGLAATARG AHTTQSVVLEVAHKRNLKVNFLFHFCLVDINDIRPNFYSSELKSLAREMHIAPCKLTKIL AENDVEILKKRGYKLWQGNFGWQHMPIGSLFTTSQKDCIRCKKGKHLVNRR >gi|308165644|gb|AEHO01000015.1| GENE 34 24502 - 25065 440 187 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805015|ref|ZP_07699072.1| ## NR: gi|309805015|ref|ZP_07699072.1| hypothetical protein HMPREF9213_0844 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0844 [Lactobacillus iners LactinV 09V1-c] # 1 187 1 187 187 358 100.0 1e-97 MEMSKKHIYLPRLKMCKPKETFKVPCTEVIIAEDENLVAIVSVLVNNEWLLLPARLYKVF GREIAVGAIEGENTGEAKAYMYDTKTGRAIFIKTVKASETDLHTEIFRTTQQMLEKLECD CLASLLYIDGTNFFLQVDLQAEEPENESIQLSRPALKVVKRYKTTEEMMDSYIKNYGKDW IKKNVKK >gi|308165644|gb|AEHO01000015.1| GENE 35 25193 - 26116 587 307 aa, chain - ## HITS:1 COG:no KEGG:LVIS_1129 NR:ns ## KEGG: LVIS_1129 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 6 259 3 210 250 122 35.0 2e-26 MNTENEQPNYYSILTANVRYDKNLKANEKLLFSEITALSNKYGYCTASNRYFAELYQVTE RVIRKWISDLAQLGYLKIILVSKDGKIIGRKMYPSNNFREEQMFQGGTNVPGVGNKCSAE GGTNVPLNITSNNNTSNNNNNILSGKEPDPTPEPEEKENSEFTQKTSDSKKSKTTSKTED IPYDRVIKYLNAKAGTNYRATNKATQRLIKARFTEGMTTKDFKKVIDNKCDDWLKDPKMC EYLRPATLFGSKFESYLNQKTKPKTDWHEYSTRADTDTNVSSDNAEPKLSAEELDKIFNS FGKSENT >gi|308165644|gb|AEHO01000015.1| GENE 36 26128 - 26637 613 169 aa, chain - ## HITS:1 COG:no KEGG:LJ1449 NR:ns ## KEGG: LJ1449 # Name: not_defined # Def: Lj928 prophage protein # Organism: L.johnsonii # Pathway: not_defined # 2 165 90 260 261 172 66.0 5e-42 MVTVQTVLVDISGFAVKTNKITFQNNQAYDAQKTASLISYAKRYSLSGAFGIAADDDDDA RNQRAVQEPKLLTNQELEQYEVTYQGFKANLYDLYQEAKDGIKDAQAWLKNSHTPQDAQA IHQIAELFKQKEKNKKKEETTKQEMKKDPFEDKKVNTTEKVPDDIESLF >gi|308165644|gb|AEHO01000015.1| GENE 37 26697 - 26900 274 67 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0582 NR:ns ## KEGG: LGAS_0582 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 67 1 67 270 92 71.0 6e-18 MEIYGEEKDRASWAMHYAQVKANITQPQRTHKVDISGKSKVGKSYQYVYKYADLADIDKA VMAGIKK >gi|308165644|gb|AEHO01000015.1| GENE 38 26903 - 27784 1004 293 aa, chain - ## HITS:1 COG:no KEGG:LJ1450 NR:ns ## KEGG: LJ1450 # Name: not_defined # Def: Lj928 prophage replication protein # Organism: L.johnsonii # Pathway: not_defined # 2 291 7 296 297 289 55.0 9e-77 MGKNELITFENNEYKLEIAPAKVDFDGYQDLKDKITKIASDWNNYVVTKDSYNSDKKTRA ELNKLKSDLDSKRLKIVRKASDPINQFNDQLKDLAGMVKSAADHIGEGLKFFDDQARKAK HQQNLILLGTIAQEYGIALQKLEYDAKWDNKTASRSAIEESARKQFDVILQQENARKEAI KVIQDKAENYTKPSMVANPYINMLAYKGLPDILKQMDSDHDYLLKQAQKQAETKRKQLEA VEQHGDKYINKNTGEVVDKIYTITLRLTGTKEQLTQLSKFIQDWGIKYEKVGK >gi|308165644|gb|AEHO01000015.1| GENE 39 27771 - 28139 391 122 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804990|ref|ZP_07699047.1| ## NR: gi|309804990|ref|ZP_07699047.1| hypothetical protein HMPREF9213_0849 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF0523_0432 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9213_0849 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF0523_0432 [Lactobacillus iners UPII 60-B] # 1 122 1 122 122 189 100.0 6e-47 MNRFIPQMNKEQEEILKERNKYYELLELAPSTLVVSIGTEQFVVGEYCEYNTSFDNAEDF IRWRLKKLKSLDKLAHEMGYSSDELLDFMEDLLEYDSEENLEQLLIDRYDAENMETWING KK >gi|308165644|gb|AEHO01000015.1| GENE 40 28256 - 28405 65 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805017|ref|ZP_07699074.1| ## NR: gi|309805017|ref|ZP_07699074.1| hypothetical protein HMPREF9213_0850 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF0523_0433 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9213_0850 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF0523_0433 [Lactobacillus iners UPII 60-B] # 1 49 1 49 49 72 100.0 1e-11 MLTRINQAINQVCDCKLTVRATTMITLAYAILIIGALIGLSLLGSPLGD >gi|308165644|gb|AEHO01000015.1| GENE 41 28424 - 28579 166 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325912787|ref|ZP_08175166.1| ## NR: gi|325912787|ref|ZP_08175166.1| hypothetical protein HMPREF0523_0434 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF0523_0434 [Lactobacillus iners UPII 60-B] # 1 51 1 51 51 75 98.0 2e-12 MFKTINKCINKIFDIDQKLTRKETTVITLAYALFLIGAIIALIILCSPIAE >gi|308165644|gb|AEHO01000015.1| GENE 42 28604 - 28972 329 122 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325912759|ref|ZP_08175138.1| ## NR: gi|325912759|ref|ZP_08175138.1| hypothetical protein HMPREF0523_0435 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF0523_0435 [Lactobacillus iners UPII 60-B] # 1 122 1 122 122 203 100.0 3e-51 MSEIERKSKLLKKAVRRKTMELINKKSLQELIKATFMETKPIFEEHFTGSKGKLSKDELK ALEKAGRQHYYSATEACQFLGVSQATFWKWKKKYPELKPIMVDGICRFAREDLINFMNEK RK >gi|308165644|gb|AEHO01000015.1| GENE 43 28999 - 29796 794 265 aa, chain - ## HITS:1 COG:SPy0946_2 KEGG:ns NR:ns ## COG: SPy0946_2 COG3645 # Protein_GI_number: 15674964 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Streptococcus pyogenes M1 GAS # 135 261 2 127 127 164 63.0 1e-40 MINNNEIQIFNFENNEIRTKIIDNEPYFNLTDACKILEIQNTRNAKARLNEDGVRTMDTI DRLGRTQQANFISEPNLYKLIFQSRKPEAEKFADWVTSEVLPAIVHKGVYMTDKKAYDIT HDRTGATLADLLQQAADQLKQKDIQIAEMKPKALFADAVATSNRSILVGELAKLIRQNGV DIGQNRLFIWLREHGYLIKRKGTDYNMPTQKAVAMGIFQIKETSITHSNGTVTLTKTAKV TGKGQQYFINKFLCSQRVLPVIERS >gi|308165644|gb|AEHO01000015.1| GENE 44 29793 - 30200 274 135 aa, chain - ## HITS:1 COG:SPy0980_1 KEGG:ns NR:ns ## COG: SPy0980_1 COG3617 # Protein_GI_number: 15674990 # Func_class: K Transcription # Function: Prophage antirepressor # Organism: Streptococcus pyogenes M1 GAS # 8 102 3 99 123 70 40.0 6e-13 MDNIESGIQTFYFEHNRIQMMAIGSDPYFNLEDVCEILKIKDTKRAKARLDEQGVCDAMT LTSSGFQKKDFISETNLYRLIFKSRRLENIKFAVWVMSEVLPVFIRNKVAKKLIKDLEKL RDEDLEELRERNSLK >gi|308165644|gb|AEHO01000015.1| GENE 45 30203 - 30343 138 46 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312873820|ref|ZP_07733864.1| ## NR: gi|312873820|ref|ZP_07733864.1| putative protein CopG [Lactobacillus iners LEAF 2052A-d] putative protein CopG [Lactobacillus iners LEAF 2052A-d] # 1 46 1 46 46 67 97.0 3e-10 MKKQYLLRIPKNIKENLKKYGDEKGVSLNAVILSAIDDYIEKKGIK >gi|308165644|gb|AEHO01000015.1| GENE 46 30493 - 30636 166 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309805012|ref|ZP_07699069.1| ## NR: gi|309805012|ref|ZP_07699069.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF0523_0439 [Lactobacillus iners UPII 60-B] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF0523_0439 [Lactobacillus iners UPII 60-B] # 1 47 1 47 47 65 100.0 1e-09 MSERTSTLIRLDKSLLEDLRNCAFKEDRSLNKQIEFILKQYINSQKK >gi|308165644|gb|AEHO01000015.1| GENE 47 30638 - 30808 186 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805019|ref|ZP_07699076.1| ## NR: gi|309805019|ref|ZP_07699076.1| conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners LEAF 2052A-d] conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners LEAF 2052A-d] # 12 56 1 45 45 69 100.0 9e-11 MDTPIKEKEKDMNNETHNLTLRLKKGLYESLKKISEEKGITVHELIVLAIVDKYNV >gi|308165644|gb|AEHO01000015.1| GENE 48 30866 - 31090 213 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312873803|ref|ZP_07733847.1| ## NR: gi|312873803|ref|ZP_07733847.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] # 1 74 3 76 76 130 98.0 3e-29 MTLKMLRVSHDLTQKEASKKVGVSEGTWSNWEHFKTFPDAEKIRKIEEVFSTKYDEILFF RVNHGLAVKHQSNK >gi|308165644|gb|AEHO01000015.1| GENE 49 31065 - 31214 187 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804989|ref|ZP_07699046.1| ## NR: gi|309804989|ref|ZP_07699046.1| conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners LactinV 09V1-c] # 1 49 1 49 49 64 100.0 3e-09 MEDWNKKIDELTELVSKLIRLSLEIGTLASVDLVERSEDIANDIEDAKS >gi|308165644|gb|AEHO01000015.1| GENE 50 31357 - 32049 838 230 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0837_10283 NR:ns ## KEGG: HMPREF0837_10283 # Name: not_defined # Def: bifunctional S24 family peptidase/transcriptional regulator # Organism: S.pneumoniae_TCH8431-19A # Pathway: not_defined # 1 229 1 240 246 126 37.0 6e-28 MALGNKEIFSQNLKYYMYKYGVDRNALCDTLGFKYMTVSDWINAKTYPRIDKIEILANYF NIKKSDLVEKQTDKQIDILPVYNQLADIRKHKVYSYAQQQLDEQNSNLNEKRSIYLVGSS AAGLPLDYGDLDAELIDLSNIPAKADKAIHIKGDSMEPKISNNSIIFYHEQPTLEIGEIG IFEINGSAVTCKKYYVDYESKKIVLKSINPKYEPMYFTGDQVRILGKVVF >gi|308165644|gb|AEHO01000015.1| GENE 51 32107 - 32607 582 166 aa, chain + ## HITS:1 COG:no KEGG:SERP0074 NR:ns ## KEGG: SERP0074 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 5 166 48 203 205 83 33.0 3e-15 MNKKVISILGSAVAVGLLTTACSDSSNNGGTRVEHSKKSKTSAKFYKVGETVKVDNVVYT LKSVQKTDERNEFADTKPQNVIKVVYHVKNCGKEDLSIGTDLSVYGPDNSKLKSYPINGQ TLDAIAPGKESDVVTGFGTDKLGDFELQFRPLVSINKAAKFKINVK >gi|308165644|gb|AEHO01000015.1| GENE 52 32801 - 33175 410 124 aa, chain + ## HITS:1 COG:no KEGG:LAR_0916 NR:ns ## KEGG: LAR_0916 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 118 1 117 117 85 48.0 7e-16 MKVTKLVVGILQILFAVIILAQSCAIGVGHAVENKTSDAGGSIGFLVAILFLATGITYIA TRKSEKLGGDIAGLIMMLITWIFAITNAHDYEDLMFWGWLAFIIGVGFFVWHYMINKKAS NKSK >gi|308165644|gb|AEHO01000015.1| GENE 53 33433 - 33954 543 173 aa, chain - ## HITS:1 COG:no KEGG:UUR10_0034 NR:ns ## KEGG: UUR10_0034 # Name: not_defined # Def: hypothetical protein # Organism: U.urealyticum_10 # Pathway: not_defined # 6 163 3 159 175 74 35.0 2e-12 MSKSKKKVKNLHKPRLNVTDNISKLDDIIYIDFTKYDKWLDSVELDDFTNYFYDEKEALK KLYFVLHQLIPDIEKKGKEIFKEKHCHPVKGKQATKAIKIVKKLHGKNVLDDETEIWELS AQKGGVRIFGVFINDTFRRFYPLFMDYHHLLYSDKNYNEADYKNNKFGTEHIN >gi|308165644|gb|AEHO01000015.1| GENE 54 33957 - 34421 489 154 aa, chain - ## HITS:1 COG:UU033 KEGG:ns NR:ns ## COG: UU033 COG3600 # Protein_GI_number: 13357589 # Func_class: S Function unknown # Function: Uncharacterized phage-associated protein # Organism: Ureaplasma urealyticum # 8 153 9 154 157 153 55.0 1e-37 MSYTFKDVAKWFLAKGNKDISPKKLQKLVYYAYAWTLTLLNDSSDDLENKLFEDGKFEAW IHGPVIRKLYVMYADYGFEDIPEKPEKPKFSKDVEDVLNQVWEVYGDYSADQLESITHQE EPWQKARKGFSPLQNCDNIISDKDIFNYYIQRVG >gi|308165644|gb|AEHO01000015.1| GENE 55 34558 - 35679 967 373 aa, chain + ## HITS:1 COG:L55605 KEGG:ns NR:ns ## COG: L55605 COG0582 # Protein_GI_number: 15673415 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 8 370 3 355 359 158 31.0 2e-38 MPKQDKRVEKYETKKGIRYRFKTYVGTDINGKKIWATRSGFTSYTEAKYELDKLKLEGVD SFVKQKQIKVNDLFTQWFDTYQTTVKESTAHKTYEMYKIHIKPKYGNAYVDKITPASLQR FANALSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSR EELDTFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLD NKYIVQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLD TIYKQLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQS KKKVAQSINDLNI Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:50:47 2011 Seq name: gi|308165631|gb|AEHO01000016.1| Lactobacillus iners LactinV 09V1-c contig00015, whole genome shotgun sequence Length of sequence - 10607 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 4, operones - 3 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 2321 2094 ## COG3857 ATP-dependent nuclease, subunit B - Prom 2355 - 2414 7.1 + Prom 2306 - 2365 4.4 2 2 Op 1 5/0.000 + CDS 2390 - 3310 885 ## COG1577 Mevalonate kinase 3 2 Op 2 . + CDS 3325 - 3456 97 ## COG3407 Mevalonate pyrophosphate decarboxylase 4 2 Op 3 5/0.000 + CDS 3434 - 4303 527 ## COG3407 Mevalonate pyrophosphate decarboxylase 5 2 Op 4 3/0.000 + CDS 4315 - 5388 1001 ## COG1577 Mevalonate kinase 6 2 Op 5 . + CDS 5401 - 6426 836 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 6429 - 6468 4.6 - Term 6417 - 6455 1.4 7 3 Op 1 1/0.000 - CDS 6461 - 6925 234 ## COG3270 Uncharacterized conserved protein - Prom 7056 - 7115 2.2 - Term 6957 - 7002 2.1 8 3 Op 2 . - CDS 7129 - 7869 845 ## COG0144 tRNA and rRNA cytosine-C5-methylases 9 3 Op 3 . - CDS 7869 - 8834 807 ## FI9785_910 hypothetical protein 10 3 Op 4 . - CDS 8836 - 9582 616 ## LAC30SC_06265 hypothetical protein - Prom 9637 - 9696 11.2 + Prom 9584 - 9643 10.4 11 4 Op 1 . + CDS 9670 - 10272 513 ## COG0681 Signal peptidase I 12 4 Op 2 . + CDS 10288 - 10473 207 ## gi|259500604|ref|ZP_05743506.1| conserved hypothetical protein + Term 10483 - 10523 1.1 Predicted protein(s) >gi|308165631|gb|AEHO01000016.1| GENE 1 2 - 2321 2094 773 aa, chain - ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 29 773 28 789 1157 195 25.0 3e-49 MINIITSTQAYDLQNEILNMAVKTYLNNKTKKTFVIVPNHVKFTTEIATLKKIANINKQD SVSVTNLQVLSFSRLAWYFLRNQKIALPEIIDDATSLMILEKIVKNKKDELLLFNNSNNG SLKQIYESIILIHQGNVDLNSISHEAVTEETNRKLHDLQIIYDEFIQMLGDHFTTKDGIQ LILKTVLDKKLSIDNMNFFFCGFSYFSLSELNIVKIIAKKANLSVFAFKTKDAQINDKVM EGDYDYIVQSTIAKLINFFNVNSLKFSTKEYGYNINLNNKEKLNAIWTENIPQQGLDLTN YVHLIKADSRYAEINFVAQTIYQQVVFNHYRYKDFLVLAPNLSEYETYLTPIFSQNNISM FNDLQKQMKFHPLVVMIENIADINDMGFKTQDIITILKTRLLIPEWYTDDIKFIADVDLL ENFVLAHNINHQLWKKSFYDFVDNNISHLDQINEKVEKLDKLRQFIIENIDNLITQLHKL TNVQEAVTLFWNFLLKNQINKKLEKWRNTAINNGDLQLAQQPEQIWALLNKLLKDYVLIA EEFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIGMVQNNSFKQVFIIGAVNNSLPKI QNKPGFLNIENINELNNSIADEQQYIENNQEVNNLDQTYQFGDVLSLASDGVYISYPIIN VSNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSFITTPQASLGYIVYLKNKTNDD ISNLLALTPSKQALLFDNVIQASSFKNKPVNLTPALAQELYGNNINISISQLE >gi|308165631|gb|AEHO01000016.1| GENE 2 2390 - 3310 885 306 aa, chain + ## HITS:1 COG:L7866 KEGG:ns NR:ns ## COG: L7866 COG1577 # Protein_GI_number: 15672386 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Lactococcus lactis # 11 303 12 307 310 172 34.0 6e-43 MNKRKVIVKTHGKVILIGEHSVVYGKDAMALPIHALNIATSVEAYHDGIWMDTLRYQGPY LTAPAEYNGLKHVVKKILSRIPTPCSIKITYTGEIPMERGLGSSAVVALGTAKALNEYFA LKMTAEEITDITNEAETINHGKASGLDAATVQSDYLVFFNKNMGPKVLSEKLGATLLIMD TGELGNTKEAVSSVKYQIEHDIVKKEAIDKLGYLADQTKDYWFKKDAPMVGTIFNEAQDI LANFGLSTTRINNLCNIANKNGAYGCKLSGGGLGGIVIALCPNQEVASSIAQLAINNYEN YWIEEI >gi|308165631|gb|AEHO01000016.1| GENE 3 3325 - 3456 97 43 aa, chain + ## HITS:1 COG:L9089 KEGG:ns NR:ns ## COG: L9089 COG3407 # Protein_GI_number: 15672387 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Lactococcus lactis # 3 39 5 41 318 58 72.0 2e-09 MKIIARAHTNIALIKYWGKADSSLKIPLMSSISMTLDAFLYRN >gi|308165631|gb|AEHO01000016.1| GENE 4 3434 - 4303 527 289 aa, chain + ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 3 285 41 326 327 197 41.0 1e-50 MLFYTETEFTHNVDLANDMVIMNGKAVNDQASYRIINYVKKLQDIYGFNDHFCIKTENHV PTAAGLASSASGFAALATSFAASYNLNLNRQELSRIARIGSGSATRSIFGGFVEWQKGYD DQTSFAFPINEHPQMDLTMLAIELDVSPKEISSTCGMKIAQTSPFYQTWLNRNKQEISEM ESAIKNNNFTRLGELSELSANEMHSLNLTAMPSFSYFQPTTITIMNLVRNLRKNGIECYY TIDAGPNVKILCQDKNVEDICKAIHNTLDSVKIIKSKFGPGVQIINCDD >gi|308165631|gb|AEHO01000016.1| GENE 5 4315 - 5388 1001 357 aa, chain + ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 354 1 355 358 284 41.0 1e-76 MITEKAPGKLYIAGEYAVLEQHCPAILVALNEFVTVSINKSQGSTGVIHSKQYSQNCIYW SRRGNKMIINNRDNPFEYILSAIKFTEMYCLEKGITLAIYDLHINSELDSPDGKKFGLGS SAAVTVATVKAILHFYGIELDKSLIFKLSAIAHYTVQGNGSAGDIAASVYGGWLAYQTFD KQWLKDELKNNKLSKIVKEQWPGLDIKLLTPPKELKLLIGWSKQPASTAQLVDQTNAKKK FIKEKYNQFLNDSRICVSEMIAAFNAGDIKTIQEHIRENRKILANFARMNNISIEIPKLT TLIEIAEKYNGAAKTSGAGNGDCGIVIADSSTNISKLKEMWILNDIKPLDFVIHSIK >gi|308165631|gb|AEHO01000016.1| GENE 6 5401 - 6426 836 341 aa, chain + ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 3 340 5 341 349 216 35.0 4e-56 MSQRSQRKKDHIDLANKYYLPHPDADFSGINLIRPALPESKISSDSIKTTFFHKIASAPF FIEAMTGGSDESYEINRRLAFCAKEENIAMALGSASILEKEPEQLKSFVIAREINPTGIL LANINPLTKPKVAEQIIKELQADALQIHLNAVQEAAMTEGDRDFHWLDNILEIQQLINVP LIIKEVGMGLDPFSVKKLAKLGINYFDVGGMGGTNFVHIENQRTANKDNLFLDDLGLSTV KSLLSNLQEISHVNFIASGGINSSINIFKSLVLGAKYVGIANHFLHLSMQDKNGTALISE IQKLKYQLVTLMALFGINKLDDVKKVKYYLSLELTNFLNQI >gi|308165631|gb|AEHO01000016.1| GENE 7 6461 - 6925 234 154 aa, chain - ## HITS:1 COG:SP1402_2 KEGG:ns NR:ns ## COG: SP1402_2 COG3270 # Protein_GI_number: 15901256 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 57 153 58 152 154 59 39.0 2e-09 MRSNIKNRIQVISKDDFKLINDILHQFNLPLYLSKQLDRAINKNNHIVIPALSDEKLKSL HIISNGIELGILKKNRFEPSHQLVYILAQVNQNNVYNITNESDFKKYLHGETLQVEHPIT YGYVLVAFEHHIFSFGKIGKDSILKNYYPKGLRR >gi|308165631|gb|AEHO01000016.1| GENE 8 7129 - 7869 845 246 aa, chain - ## HITS:1 COG:SP1402_1 KEGG:ns NR:ns ## COG: SP1402_1 COG0144 # Protein_GI_number: 15901256 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 3 244 2 238 280 247 50.0 1e-65 MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKISYID NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW LMKEKT >gi|308165631|gb|AEHO01000016.1| GENE 9 7869 - 8834 807 321 aa, chain - ## HITS:1 COG:no KEGG:FI9785_910 NR:ns ## KEGG: FI9785_910 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 309 3 312 325 225 41.0 3e-57 MKKFLLIVTIFLAFVGLAFAISIKQSQNADIILTNNGLSSSYCVYQPKLKLKIRKLLQYL DKNCKSSKLQVQFKSKYDADEILVWANYNIKGQPVIGDNARYFNKAEFKGNVTFAVISAH TPLANIVTSQNNRYLKYEGQYISIIGQLKANDQSEIQQSAYYLTTGIQQQTGNNNLNNYK IIVDGLNKKQAKKVGHFLKAKAIWVNFAQTYNLKHRINPTKKLVFGIICILFIWGISAMI AYNCNVNRRNLAMKKGKHSMIVNILQFNIINFIMICIIYFIVPMVWFYSNSSAVLKLFIF IFIIQSAIYDGIIFVRPKRRQ >gi|308165631|gb|AEHO01000016.1| GENE 10 8836 - 9582 616 248 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_06265 NR:ns ## KEGG: LAC30SC_06265 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 248 1 247 247 230 47.0 3e-59 MTSYLNKMISLVEELHLPLVDEQVLEIKFIIKCLDAKIPLPSAPNMLGIEPDVMDFYKEK LSAIDYQKLELVNQLLNNFRSYISRKYGVWSLANLNTAKEIVDKYNVHSILEIMAGNAYW SAAFSKLGVKAIATDNLEWAKGSCTGDLLFFPVKKLSAVDAIHKYRDVDIIICCWAPNFG SADMDIIEAYNTIQGKKPKLLFLGEKNGATNTARFWKSAKFKKSCELNSINHTISSFDFI DERFFEIK >gi|308165631|gb|AEHO01000016.1| GENE 11 9670 - 10272 513 200 aa, chain + ## HITS:1 COG:lin1310 KEGG:ns NR:ns ## COG: lin1310 COG0681 # Protein_GI_number: 16800378 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 41 198 28 178 180 125 43.0 7e-29 MNNYQAKHASNNQKDEPKAVPFYKSCLQVIFLSVIFLGCYYLLFTFVLANESVSGLSMQP TFENNDRLIAVRHTNLQRGDVVILKAPDNPGAFYIKRIIGMPGDTVSSKNDITYINGKPL REKYLDEYKNSLPKGQLYTNNFSLKKLFNVSRVPKNSYFVMGDHRNISKDSRIIGFIKKK DIVGEVKLRYFPINKIQIFK >gi|308165631|gb|AEHO01000016.1| GENE 12 10288 - 10473 207 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259500604|ref|ZP_05743506.1| ## NR: gi|259500604|ref|ZP_05743506.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners DSM 13335] # 1 61 6 66 66 85 98.0 1e-15 MLNQNIADLIINYELQHNLTDNTLAFKSHISVEKIHQLKTTGNNNISDDDINRILQYIEK N Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:51:02 2011 Seq name: gi|308165629|gb|AEHO01000017.1| Lactobacillus iners LactinV 09V1-c contig00047, whole genome shotgun sequence Length of sequence - 565 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 563 301 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|308165629|gb|AEHO01000017.1| GENE 1 2 - 563 301 187 aa, chain + ## HITS:1 COG:SPy0198 KEGG:ns NR:ns ## COG: SPy0198 COG2801 # Protein_GI_number: 15674400 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 9 187 2 179 268 167 51.0 1e-41 EKGYQLKYLLKAIGVSKSTYYFEINKSDVVADRNEELLIVIREIFEKNKHRYGVRRIYHE LLNRGYHINHKRVQRLMHEAGLAGKRPKEKYHSYKGEVGKIADNVINRDFSTTAPLQKWT TDVSQFNFSWGKCYIAPVLDMNTNEIISYDLSKSPNLKQIERMLDKAFDQFPSVEGLVFH SDQGWQY Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:51:06 2011 Seq name: gi|308165617|gb|AEHO01000018.1| Lactobacillus iners LactinV 09V1-c contig00011, whole genome shotgun sequence Length of sequence - 12954 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 5, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 66 - 155 47.7 # Pseudo GGA 0 0 + TRNA 255 - 326 62.4 # Glu TTC 0 0 + TRNA 331 - 403 86.4 # Val TAC 0 0 2 1 Op 2 2/0.000 + CDS 1722 - 3188 1312 ## COG0477 Permeases of the major facilitator superfamily + Term 3436 - 3474 5.4 + Prom 3192 - 3251 7.9 3 2 Op 1 . + CDS 3485 - 5899 2985 ## COG0495 Leucyl-tRNA synthetase 4 2 Op 2 . + CDS 5921 - 7549 1278 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 5 2 Op 3 . + CDS 7573 - 8139 544 ## COG0406 Fructose-2,6-bisphosphatase 6 3 Tu 1 . - CDS 8284 - 9048 653 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 9085 - 9144 8.9 + Prom 9006 - 9065 7.9 7 4 Op 1 . + CDS 9211 - 9681 523 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 8 4 Op 2 . + CDS 9699 - 10007 334 ## lp_3600 galactitol PTS, EIIB (EC:2.7.1.69) 9 4 Op 3 . + CDS 10026 - 11591 1554 ## COG3775 Phosphotransferase system, galactitol-specific IIC component + Prom 11626 - 11685 8.3 10 5 Tu 1 . + CDS 11868 - 12572 912 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Predicted protein(s) >gi|308165617|gb|AEHO01000018.1| GENE 1 524 - 1729 1466 401 aa, chain + ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 1 393 1 393 400 553 69.0 1e-157 MKQEKHLFTSESVSEGHPDKIADQISDAILDAILAKDPNGRVACETTVTTGLVLVVGEIS TLAYVDIQSIVRKTINEIGYNRPELGFDASNCAILVDIDEQSSDIAGGVDNSLEVRSGNK GDDRLNQIGAGDQGLMFGFAIKETPELMPLPISLAHKIMRKTADLRKNGTLPWLRPDAKA QVTVEYDKDNKPKRIDTIVVSTQTDDVVSNDEIQNSIINDVIKKVIPERYLDENTKYLIN PSGRFVIGGPKGDSGLTGRKIIVDTYGGYARHGGGAFSGKDLTKVDRSASYAARYVAKNI VAAGLAYRCEIQLAYAIGVAHPVSIMIDTAGTGVVDESLLVQAVREIFDLRPAGIIKMLD LNRPIYKQTAAYGHFGRTDIDLPWEHTDKVSELLDYVKNHE >gi|308165617|gb|AEHO01000018.1| GENE 2 1722 - 3188 1312 488 aa, chain + ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 6 486 3 487 491 347 42.0 2e-95 MNKARHTNIKIITCAIFLTTFMTAIEGTIVSTAMPTIVSDLNGLEIMSWVVSIFLLMTAV TTPIYGKLADSFGRKPVFLFGILIFVIGSSLCGLAQNMFQLIIFRTIQGLGSGAIQPVAI TMLADLYPIDKRSKILGLNCGFWGVAAILAPLLGGFIVQHLSWHWIFYINVPIGIAALIM VQVYFIEKKVNKIVSLDYAGSAILIVFLLSLMLFLQFLDQPGTLLLTIALLVISIFSFVL FFSVEKKAKDPIIPLSIIKNKEFICHSLITLLISGVVIGFEFYIPTWMQGINGVSSSMAG FAVTPSSLLWIVGSFISGTLMFRYGTKKLFDVFLAVLLLADICLLFVPIYTPLWVFCVLA AVNGIGFGIIITVALMKSQLIVSPKDIGVATAFNTLLKFLGQTMMVSLFGVVFNTSIMAG LQKHPQLTQNMMNKIVASAKLSQLDPKFVPQLRMVLINALKSGYWVALVLIVVSFLLNHL YKEKKIKK >gi|308165617|gb|AEHO01000018.1| GENE 3 3485 - 5899 2985 804 aa, chain + ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 2 803 3 802 803 1152 66.0 0 MYNHKVVERKWHQYWSEHKTFKTGTDPNKKNYYALDMFPFPSAKGLHVGHPEGYTATDIL ARMKRAQGYNVLHPMGWDAFGLPTEQYAIKTGRDPMDVTKENIANFKNQLTQLGFSYDWD REVNTSDPAYYKWTQWVFEQMYKMGLAYEAEVPVNWSPDLGTVVANEEVIDGKTERGGFP VYRRNMRQWMLKMTAYADRLLEDLDDLDWPEPIKEMQRNWIGRSYGAQITFQVENTNLTF DVFTTRPDTLFGVSYTVLAPENELVKKITTEEHQADVEAYIKKIESKSDLERTDLNKDKT GVFTGAYAINPINGDRVPIWISDYVLASYGTGAVMAVPAHDDRDYAFASKFSLPIKEVIK GGDVHQAAFVGDGEHVASGFINGLHNEEAKNKIIEWLEEHKLGKRTVNYKLRDWDFSRQR YWGEPIPIIHWEDGETTLVPEDQLPLILPHATNIKPSGTPESPLANLTDWINVVDENGRK GKRETNTMPNWAGSSWYYLRYIDPHNTEKLGEYELFKKWLPVNMYVGGAEHAVRHLLYAR FWHKVLYDLGVVPTKEPFQKLYNQGLILKDHEKMSKSRGNVVNPDDIVEEYGADSLRTYE MFMGPLDASIDWDDNGPASIKKFLDRVWRLMVNDLDVKAVVSDKIVEENDGQLDKVYNQT VKKVTEDFEALHFNTAISQMMVFVNEAQKATSIPRAYAEGFVQLLAPVAPHMMEEIWQIL GHDESISYVKWPSYDESKLIESVVEVMIQINGKLRGKIKVKVDTAKEELEKQALADQHVQ KFLADKEIRKIIIVPNKIINIVAK >gi|308165617|gb|AEHO01000018.1| GENE 4 5921 - 7549 1278 542 aa, chain + ## HITS:1 COG:lin1665 KEGG:ns NR:ns ## COG: lin1665 COG2244 # Protein_GI_number: 16800733 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 15 541 5 536 537 311 34.0 3e-84 MNNNNQQTENSRISLLKGSAWMTLGSIFSRVLGAIYIIPWYAWMGAHGNVANALTAKSYN IYSLFLIISTAGIPGAVAKQVAKYNAINEYGIGRKLFKHGLFLMMIFGVVSAFVMTIASP ILAGNDSRQIPVLHSLALAVLIIPILSIMRGYFQGYNDMMPSALSQLVEQIARVAWMLFT AYLIMQVQHGSYLTAVIQSNLAAAVGAFFGIALLVLFLLKRKSNDDKLILSSNNEIEVST QSLFKEIIGQSVPFIIIDSGITFFQLMDQYTFHPIMNNLVHVSYDQIESWYALFGLNANK LIMVIVSLATAMAMTAIPLLSGAHAKKDYKDISRQIENTLELFLFFMIPASLGMAAVSVP VYTIFYGADPLGANILFLSGIAAMFLGAFTILMAILQGLSENGLAIKYLLIGIIIKSIFQ WPSIKLFQVYGPLISTIIGLIFTITFALMHLRIKYKYNYKRTKKIFLAILIISLMMFMLS LIFVVIAGKLLNPEHRINALILATGGSIIGGLFYFYITFKLKLAQKVIGNKVERLAKKLH IC >gi|308165617|gb|AEHO01000018.1| GENE 5 7573 - 8139 544 188 aa, chain + ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 180 1 184 199 132 42.0 3e-31 MVKTLYIVRHGQTFFNFHHKTQGSCDSRLTALGIRQAKAAGDYFKKQNIHFDAAYCSTQE RASDTLELITDHKMPYTRLKDFCEKDYGIFEGADEYTLPWNGDKLDAPSMERDDHVVERM VNGLKQVQKETEDGQNILIVAHGDIIAMFSKLYNSNIPHFSCCSFVKFLYDKGTYTFAGF YEPAIGVE >gi|308165617|gb|AEHO01000018.1| GENE 6 8284 - 9048 653 254 aa, chain - ## HITS:1 COG:glpR KEGG:ns NR:ns ## COG: glpR COG1349 # Protein_GI_number: 16131297 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1 232 1 231 252 109 30.0 4e-24 MKSSQRINKLIEILKDHPTIHITTLQKNTNTPISTLRRDLMILEQQHLIKREAGKIILLK QENIEYAWLYRENKNTLLKDKLCKTASNLIQNNNAIFIDSSTTCTKLATYLNNFSNLKII TNNLIVASQLQNHMNFSVFISGGLIKPYSQSVLDNEAIRFIHQFKTKYAFVSCSTIDLSG LYMADLLQAQVKREAIKQSEKTVALIDSSKFKNNQDFIKLCDLSDIDILITDKKITDTKF INFCKVHNIQIINS >gi|308165617|gb|AEHO01000018.1| GENE 7 9211 - 9681 523 156 aa, chain + ## HITS:1 COG:lin2202 KEGG:ns NR:ns ## COG: lin2202 COG1762 # Protein_GI_number: 16801267 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 4 155 1 153 155 94 33.0 5e-20 MTTIDYKNMIQKDCIFLNLKVADRHELFEQVGEKLKRTGYVKDTYVDALNEREAEFPTGL MTKYLPISLPHVDSVNVNRAFIAVVKNDKPIHMLQMGSNEDMQCEYFFFLGITDSSHQVI LLQKFMQLLRDKSFVDRLICINNVDDMFEFMQEKFN >gi|308165617|gb|AEHO01000018.1| GENE 8 9699 - 10007 334 102 aa, chain + ## HITS:1 COG:no KEGG:lp_3600 NR:ns ## KEGG: lp_3600 # Name: pts36B # Def: galactitol PTS, EIIB (EC:2.7.1.69) # Organism: L.plantarum # Pathway: Galactose metabolism [PATH:lpl00052]; Phosphotransferase system (PTS) [PATH:lpl02060] # 1 101 1 101 103 117 58.0 2e-25 MASIVVACGSGVATSENVVGIIKSFLEEHNITGVKVNATDFKQLADILPQYDIYVWIAKP TQEIMDICSKNGIIDVNGVNILTGNNDEDSYKKIIWGLKRLI >gi|308165617|gb|AEHO01000018.1| GENE 9 10026 - 11591 1554 521 aa, chain + ## HITS:1 COG:lin2200 KEGG:ns NR:ns ## COG: lin2200 COG3775 # Protein_GI_number: 16801265 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Listeria innocua # 1 439 1 439 449 397 48.0 1e-110 MQVLQSVVQWVLNLGSNVFVPFIMFIIGLAAGLKFKKSFVAALTLGVAFTGMTLVVNYMT SIITPAGKAMSKALSVSLTATDLGWTGVAAITWTAKVAFLFFPLLLVINFIMLALNWTKT LNVDMWNVWNKIFTYVLVYYMTNSMLFGFLVAGLQIIFELKAGDVFQRHIQDLTGMEAIT VPHFITLFAVILMPLNRILDFFPIFNKPFDAEHIQKKLGIWGRNDTMGFIIGLLLGFGAG YGLSKSLTLGIEAAAAMSLFPMISKLFMEALNPIAASMGKFMKNHFKDREVYIGVDWPVL AGRSEFWVTLIILVPIELIFAMILPKNNVLPFAGIINLSFGVAALILTGANLLRMIVLGI ITTPIFLYGGTYFAPMITKMAQTTHAVKVPAGTQISWSSFEGPDFRMLFGQAFSCKWWAI IGAIVWTLLFIWMYRYVSKAPLPSQRYHMNLDTEEVSDTTNAISSESVISDDYKSIDLHE LDGKDLSNKKHVIPNLRRSNEDYKSVGLHDIDGKDFSALRH >gi|308165617|gb|AEHO01000018.1| GENE 10 11868 - 12572 912 234 aa, chain + ## HITS:1 COG:lin2198 KEGG:ns NR:ns ## COG: lin2198 COG0235 # Protein_GI_number: 16801263 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 6 223 2 201 216 161 41.0 9e-40 MTEKFIFEDERRDLARIAKLFFDRNRTNVAGGNISEKIIPKEDYIYDNICIKANHPYIIM TPTMMSEAWFGDLEASQILVVDLDSGEKIDGVGRLTREINLHEEAYKANPNITVVYHSHA PKSMFWATCGLDEPNVTEITNVQVPLGKLKCLHYSPACTKELADTVREELLNRPNQIDNF LLLDSHGVLITTNDLHRAAMILEVTEWNAEIAYKQAVFNKLGLLDGYHSCGKKI Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:51:38 2011 Seq name: gi|308165521|gb|AEHO01000019.1| Lactobacillus iners LactinV 09V1-c contig00060, whole genome shotgun sequence Length of sequence - 92806 bp Number of predicted genes - 97, with homology - 95 Number of transcription units - 47, operones - 24 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 - CDS 210 - 962 299 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 2 1 Op 2 41/0.000 - CDS 974 - 1741 222 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 3 1 Op 3 . - CDS 1741 - 2532 719 ## COG0581 ABC-type phosphate transport system, permease component 4 1 Op 4 . - CDS 2459 - 2635 66 ## 5 1 Op 5 39/0.000 - CDS 2638 - 3552 789 ## COG0573 ABC-type phosphate transport system, permease component 6 1 Op 6 . - CDS 3555 - 4424 885 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 4478 - 4537 7.9 + Prom 4459 - 4518 10.7 7 2 Tu 1 . + CDS 4571 - 5287 612 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Term 5037 - 5079 1.1 8 3 Op 1 36/0.000 - CDS 5290 - 5967 286 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 9 3 Op 2 . - CDS 5990 - 7045 807 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 10 3 Op 3 . - CDS 7049 - 7513 284 ## LCRIS_01869 transcriptional regulator - Prom 7603 - 7662 5.8 - Term 7642 - 7692 -0.2 11 4 Op 1 . - CDS 7713 - 8198 642 ## COG2190 Phosphotransferase system IIA components 12 4 Op 2 . - CDS 8203 - 8712 450 ## LJ0638 hypothetical protein 13 4 Op 3 . - CDS 8690 - 9079 305 ## LJ0637 hypothetical protein - Prom 9105 - 9164 2.0 - Term 9180 - 9211 -0.6 14 5 Tu 1 . - CDS 9266 - 9496 227 ## LJ0637 hypothetical protein - Prom 9534 - 9593 7.9 15 6 Op 1 . - CDS 9831 - 10622 784 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 16 6 Op 2 2/0.000 - CDS 10676 - 11452 577 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 11474 - 11533 5.7 - Term 11461 - 11506 5.9 17 7 Op 1 . - CDS 11536 - 12522 701 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases 18 7 Op 2 . - CDS 12559 - 12879 328 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases - Prom 12904 - 12963 3.3 - Term 13232 - 13282 10.9 19 8 Tu 1 . - CDS 13283 - 14503 1238 ## COG0172 Seryl-tRNA synthetase - Prom 14689 - 14748 4.3 - Term 14677 - 14714 -0.1 20 9 Op 1 . - CDS 14839 - 15336 242 ## PROTEIN SUPPORTED gi|116514699|ref|YP_813605.1| acetyltransferase 21 9 Op 2 . - CDS 15340 - 15939 555 ## COG0398 Uncharacterized conserved protein - Prom 16033 - 16092 7.7 + Prom 15854 - 15913 8.9 22 10 Tu 1 . + CDS 16084 - 16863 826 ## COG0657 Esterase/lipase + Term 16866 - 16915 5.1 23 11 Op 1 . - CDS 16926 - 17768 831 ## LGAS_1627 hypothetical protein 24 11 Op 2 . - CDS 17790 - 18698 590 ## LJ0665 hypothetical protein - Prom 18721 - 18780 8.1 + Prom 18719 - 18778 6.3 25 12 Tu 1 . + CDS 18870 - 19787 1113 ## COG2971 Predicted N-acetylglucosamine kinase + Term 19814 - 19858 2.3 - Term 19800 - 19846 7.2 26 13 Op 1 . - CDS 19851 - 20762 806 ## LJ0652 hypothetical protein 27 13 Op 2 . - CDS 20782 - 22077 1161 ## COG2195 Di- and tripeptidases - Prom 22106 - 22165 7.2 - Term 22158 - 22204 9.1 28 14 Op 1 . - CDS 22219 - 22779 672 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 29 14 Op 2 . - CDS 22792 - 23601 713 ## COG1072 Panthothenate kinase - Prom 23655 - 23714 3.6 30 15 Tu 1 . - CDS 23722 - 26031 1681 ## COG3973 Superfamily I DNA and RNA helicases - Prom 26070 - 26129 9.5 - Term 26148 - 26192 1.9 31 16 Op 1 51/0.000 - CDS 26196 - 28286 2560 ## COG0480 Translation elongation factors (GTPases) 32 16 Op 2 56/0.000 - CDS 28319 - 28789 762 ## PROTEIN SUPPORTED gi|42518426|ref|NP_964356.1| 30S ribosomal protein S7 33 16 Op 3 . - CDS 28805 - 29212 676 ## PROTEIN SUPPORTED gi|42518425|ref|NP_964355.1| 30S ribosomal protein S12 - Prom 29282 - 29341 8.8 + Prom 29079 - 29138 7.7 34 17 Tu 1 . + CDS 29385 - 29891 319 ## gi|309805132|ref|ZP_07699185.1| hypothetical protein HMPREF9213_1221 - Term 29791 - 29837 -0.2 35 18 Op 1 . - CDS 29883 - 30548 399 ## FMG_1337 hypothetical protein 36 18 Op 2 . - CDS 30614 - 31795 1215 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 31847 - 31906 9.0 - Term 31896 - 31927 -0.5 37 19 Tu 1 . - CDS 31951 - 32652 850 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 32728 - 32787 6.1 38 20 Tu 1 . - CDS 32795 - 33352 403 ## COG0194 Guanylate kinase - Prom 33397 - 33456 4.7 + Prom 33340 - 33399 9.0 39 21 Tu 1 . + CDS 33445 - 33732 418 ## LAC30SC_09460 hypothetical protein + Prom 33748 - 33807 5.7 40 22 Tu 1 . + CDS 33840 - 34013 197 ## gi|309805090|ref|ZP_07699143.1| conserved domain protein + Term 34048 - 34085 -1.0 + Prom 34138 - 34197 7.0 41 23 Op 1 . + CDS 34348 - 34548 226 ## FI9785_p9785L.22 hypothetical protein 42 23 Op 2 . + CDS 34578 - 36149 885 ## COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 43 23 Op 3 . + CDS 36170 - 37741 1246 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Term 38028 - 38065 4.2 44 24 Op 1 . - CDS 38142 - 38861 965 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 45 24 Op 2 . - CDS 38920 - 40185 1293 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 40235 - 40294 3.6 46 25 Op 1 5/0.000 - CDS 40317 - 41939 2113 ## COG0504 CTP synthase (UTP-ammonia lyase) - Term 41958 - 41988 1.0 47 25 Op 2 . - CDS 42047 - 42547 787 ## COG3343 DNA-directed RNA polymerase, delta subunit 48 25 Op 3 . - CDS 42612 - 43043 305 ## FI9785_297 hypothetical protein - Prom 43070 - 43129 6.6 + Prom 43058 - 43117 9.3 49 26 Tu 1 . + CDS 43182 - 44558 1527 ## COG1078 HD superfamily phosphohydrolases - Term 44527 - 44574 10.3 50 27 Tu 1 . - CDS 44587 - 45279 939 ## COG0588 Phosphoglycerate mutase 1 - Prom 45308 - 45367 9.0 + Prom 45379 - 45438 8.0 51 28 Op 1 . + CDS 45467 - 45958 442 ## COG2461 Uncharacterized conserved protein 52 28 Op 2 . + CDS 45977 - 46777 467 ## LGAS_0165 hypothetical protein 53 29 Tu 1 . - CDS 46814 - 47632 725 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) - Prom 47660 - 47719 8.2 - TRNA 47718 - 47790 64.5 # Thr GGT 0 0 - Term 47800 - 47848 10.2 54 30 Tu 1 . - CDS 47849 - 49114 617 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 49281 - 49340 4.1 55 31 Op 1 . - CDS 49344 - 49976 327 ## COG0344 Predicted membrane protein 56 31 Op 2 . - CDS 49964 - 51052 921 ## COG1316 Transcriptional regulator 57 31 Op 3 . - CDS 51088 - 51723 600 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) - Prom 51766 - 51825 8.9 + Prom 51696 - 51755 7.2 58 32 Tu 1 . + CDS 51806 - 51985 220 ## COG1335 Amidases related to nicotinamidase - Term 52363 - 52406 11.2 59 33 Op 1 . - CDS 52411 - 53187 714 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria - Prom 53208 - 53267 3.6 60 33 Op 2 4/0.000 - CDS 53269 - 54300 1300 ## COG0012 Predicted GTPase, probable translation factor 61 33 Op 3 1/0.000 - CDS 54313 - 54564 372 ## COG4481 Uncharacterized protein conserved in bacteria 62 33 Op 4 25/0.000 - CDS 54579 - 55457 1103 ## COG1475 Predicted transcriptional regulators 63 33 Op 5 25/0.000 - CDS 55441 - 56214 736 ## COG1192 ATPases involved in chromosome partitioning 64 33 Op 6 4/0.000 - CDS 56217 - 57062 933 ## COG1475 Predicted transcriptional regulators 65 33 Op 7 . - CDS 57083 - 57802 656 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division - Prom 57874 - 57933 6.0 66 34 Tu 1 . + CDS 57956 - 58363 290 ## LJ0553 hypothetical protein + Term 58494 - 58549 7.4 - Term 58489 - 58527 -0.2 67 35 Op 1 . - CDS 58530 - 59315 1072 ## COG2365 Protein tyrosine/serine phosphatase 68 35 Op 2 1/0.000 - CDS 59333 - 59893 681 ## COG0431 Predicted flavoprotein 69 35 Op 3 . - CDS 59887 - 60444 463 ## COG0431 Predicted flavoprotein 70 35 Op 4 . - CDS 60457 - 60678 253 ## gi|259501216|ref|ZP_05744118.1| conserved hypothetical protein - Prom 60730 - 60789 9.1 + Prom 60657 - 60716 10.1 71 36 Op 1 . + CDS 60776 - 62188 1344 ## COG4690 Dipeptidase 72 36 Op 2 . + CDS 62212 - 63591 1055 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 63618 - 63654 8.2 - Term 63597 - 63650 15.1 73 37 Op 1 20/0.000 - CDS 63670 - 64527 946 ## COG3833 ABC-type maltose transport systems, permease component 74 37 Op 2 19/0.000 - CDS 64546 - 65895 1009 ## COG1175 ABC-type sugar transport systems, permease components 75 37 Op 3 1/0.000 - CDS 65958 - 67172 1795 ## COG2182 Maltose-binding periplasmic proteins/domains - Prom 67197 - 67256 2.0 - Term 67207 - 67256 2.2 76 37 Op 4 3/0.000 - CDS 67275 - 68378 1449 ## COG3839 ABC-type sugar transport systems, ATPase components 77 37 Op 5 11/0.000 - CDS 68398 - 69060 798 ## COG0637 Predicted phosphatase/phosphohexomutase 78 37 Op 6 . - CDS 69045 - 71318 2329 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 79 37 Op 7 . - CDS 71302 - 71451 69 ## gi|259501207|ref|ZP_05744109.1| conserved hypothetical protein 80 37 Op 8 7/0.000 - CDS 71426 - 73174 1452 ## COG0366 Glycosidases 81 37 Op 9 3/0.000 - CDS 73189 - 74850 1535 ## COG0366 Glycosidases - Prom 74933 - 74992 8.2 - Term 74961 - 75005 6.1 82 38 Op 1 . - CDS 75015 - 75968 797 ## COG1609 Transcriptional regulators - Prom 75998 - 76057 6.9 83 38 Op 2 . - CDS 76062 - 76838 826 ## COG2365 Protein tyrosine/serine phosphatase - Prom 77077 - 77136 9.8 + Prom 76858 - 76917 8.6 84 39 Op 1 . + CDS 77006 - 77677 669 ## COG3442 Predicted glutamine amidotransferase 85 39 Op 2 . + CDS 77667 - 79052 1167 ## COG0531 Amino acid transporters + Term 79067 - 79120 2.6 86 40 Tu 1 . - CDS 79008 - 79160 58 ## - Prom 79181 - 79240 9.2 + Prom 79118 - 79177 9.9 87 41 Tu 1 . + CDS 79312 - 80190 841 ## Ldb1900 hypothetical protein + Term 80200 - 80237 4.2 - Term 80258 - 80301 3.1 88 42 Tu 1 . - CDS 80344 - 83058 2493 ## COG1511 Predicted membrane protein - Prom 83146 - 83205 11.1 - Term 83184 - 83241 2.5 89 43 Op 1 . - CDS 83242 - 83826 479 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 90 43 Op 2 . - CDS 83855 - 84154 167 ## LGAS_1785 DMT family permease - Prom 84273 - 84332 4.8 + Prom 84526 - 84585 2.9 91 44 Tu 1 . + CDS 84612 - 85622 1226 ## COG2502 Asparagine synthetase A + Term 85697 - 85756 7.1 92 45 Tu 1 . - CDS 85985 - 87598 738 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 87776 - 87835 14.9 - Term 87762 - 87812 3.0 93 46 Tu 1 . - CDS 87898 - 89280 1100 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 89327 - 89386 11.8 - Term 89456 - 89503 8.1 94 47 Op 1 4/0.000 - CDS 89508 - 89867 223 ## COG4687 Uncharacterized protein conserved in bacteria 95 47 Op 2 13/0.000 - CDS 89869 - 90798 892 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 96 47 Op 3 13/0.000 - CDS 90823 - 91617 1117 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 97 47 Op 4 . - CDS 91645 - 92634 1272 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 92671 - 92730 6.5 Predicted protein(s) >gi|308165521|gb|AEHO01000019.1| GENE 1 210 - 962 299 250 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 245 1 239 245 119 33 4e-26 MKIISIKDLSLKYDEFEVLHKISMDIEANAVTALIGASGCGKSSFLRCFNRMNDLIPNSK VTGNIKFKQYEIYANNIDLAFLRQKIGMVFQQPNAFSFSIYDNVAFGLKIQGINKKKILD ERVENALKEAAIWDEVKDKLSCNACSLSGGQQQRICIARALATNPEILLMDEPTSALDPI SAAKVEETILFLKKQHTIILVTHNIEQAKRVSDNLAFFMSGHLIEYGVSRDIFTQAKNKD TKDYLEGKWS >gi|308165521|gb|AEHO01000019.1| GENE 2 974 - 1741 222 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 11 242 12 235 312 90 29 4e-17 MNNNLDTPYILQTSELSVSYGKTKVLKDISIDIYQNKITSLIGCSGSGKTTFLRSINRID DNITTVSGKIYFAGLEINNPKINVYELRKNVGMVFQQPNVFAKSIYENIAYALRYHGMSD KDEVYETVEKSLKQTSLWDEVKNNLAKCALELSGGQQQRLCISRAIALKPKLLLLDEPTS ALDPIATAKLEETIKQLKEKYSIIMVTHNMQQARRVSDYIAFFNMGSLIEYGSVDDIFLR PQISITKNYVSGKFG >gi|308165521|gb|AEHO01000019.1| GENE 3 1741 - 2532 719 263 aa, chain - ## HITS:1 COG:SPy1243 KEGG:ns NR:ns ## COG: SPy1243 COG0581 # Protein_GI_number: 15675203 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 2 261 36 295 295 255 49.0 5e-68 MGIRYLSLKSILLPSQITGSGGGIRDQLFNSVYMLLLTLIISLPLSIGSGIYLAEFAPKN KIVDFIQNMIDVLSYMPSIVVGLFIYLIIVIKFNIGFSILAGSLALTIFNLPILTANIKN AFCNISQAQRDAGKALGLSEWNLIKGILLPQTIPTIIVAVVLSAGRIFGEAAALIYSSGQ SAPLLNYANWNPFCMDSPLNIMRPAETLSVYIWKINSEGLKPDAEKISFCSILILVGVIL LFDLIAHFLGNYLHQKFIYGKKK >gi|308165521|gb|AEHO01000019.1| GENE 4 2459 - 2635 66 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSNSFIDKVAKKIILLIVLLLLSFLLLFFDIYIWHGYPISIIKIYIATIANYWFRWWY >gi|308165521|gb|AEHO01000019.1| GENE 5 2638 - 3552 789 304 aa, chain - ## HITS:1 COG:lin2641 KEGG:ns NR:ns ## COG: lin2641 COG0573 # Protein_GI_number: 16801703 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 6 301 7 303 307 249 49.0 4e-66 MADLHQKLLKTSKAINENRRGIVITAFCTMFIVITAISLIVFIAIKGLAIFVDNRASLLN FLISDVWQPGNTSNGRPLIGALAMIVGSFGVTLLALMLAIPFGLALSLFVTQYAKKRVKD ILQIVLDLFTGIPSVVYGFLGLILIVPVVRKIYGGTGFGLLSGAVVLAVMILPTITSIMI NAINGVPISMIQASLALGATRWQTIYKIILRFCLPGLLIGVIFGMARALGEAMAVQMVIG NTVLLPKGLATPTTTLTSQLTVQMGNTIFGTVQNNALWTLALFLLLISLVFNVLIRTLAK KGNY >gi|308165521|gb|AEHO01000019.1| GENE 6 3555 - 4424 885 289 aa, chain - ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 28 286 45 302 302 263 53.0 3e-70 MKIKTIKYLLFTLVMTCTLTACSQKQESLISVGSTALQPLVEEASVHYADKNHVRINVQG GGSGTGLNQVQAGTVTIGNSDIFAQQADGINANKLIDHRVAVVGIVPVINKKIGITNISM LQLREIFSGKINNWNQLGGPNQKIVVVNRAEGSGTRKTFELEVMKGQKMKLSQTQDSNGS VQKIISTTPGSISYLAFPYANKKKLQKLSINHVKPTSANVLTNKWVLWSYEHMYMNKKKQ QQAAKKFIEYIMSRQFQTSTVEKMGYISIRKMKVQKDANGKVTLIKNKG >gi|308165521|gb|AEHO01000019.1| GENE 7 4571 - 5287 612 238 aa, chain + ## HITS:1 COG:TM1655 KEGG:ns NR:ns ## COG: TM1655 COG0745 # Protein_GI_number: 15644403 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Thermotoga maritima # 2 238 12 245 247 99 31.0 5e-21 MKTIILLSKDIVLFTGLNTLANQKQTSIYNALTIKKVIKHASDPDTIGIIIDLHHLHDED FFNNLDKIRHHFNGPIIILTKVFDAHSAKKMFKIKASVCLTSYNPDLILAQLISLIWLNE NPRKIVENQEDIHDYLLSEHKKINLDLRQYPPKLNGKILNLTSKEFKLLKFLFENQNHVL SREQLLDGVWEYEDEYNTTRIVDMHISNLRDKIEADPANPQLIKTVRGLGYMLKLPNQ >gi|308165521|gb|AEHO01000019.1| GENE 8 5290 - 5967 286 225 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 3 201 4 199 223 114 35 1e-24 MSLVSLKNVNKIYGKGSSQIKSLDNINFAADAGQVVLIEGPSGSGKSTFLTILGALQKAT SGQVIISGEEITAMNSKQLDQLRLNKIGFILQSYALVPYLKIREQFVLANIIKKTNNMDQ LQLNNLLKQLQVNELLDKYPKELSGGQRQRIAIARALYTNPPIVLADEPTASLDSKCVTL VGQLFQQFAHQDGTLIVMVTHDQRLEQYADVIYRIVDGKMDKRID >gi|308165521|gb|AEHO01000019.1| GENE 9 5990 - 7045 807 351 aa, chain - ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 350 2 356 357 225 37.0 1e-58 MFLALKEIRYEKVRYGLITCIILLISYLIFILSALAFGLANENTQVIKEWQMQTIILNEN SNLNLNQSILTKQDLEKNKLTKQDASIGQVPIVVKKAHRKTVSSQLIAINREQYIFKTMS LVAGRKFNNKHEVVVDSLFNQYGYQIGDKIKFNGKNDSYKIVGFVKNAKLNIAPLVYGDF SLWKKIRPMAPAAQATAIVSQRKLNYHHKQAKNYSTKQFILKLPGYVAQNTTFEMMIAFL FIISLITIAIFLYIVTMHKLPSYAVLRAQGVSAKMLVKATVLQSFLLSIVGSMLGLIFTL LTLKAMPITVPMYLSSWMMVSVILGMIVVGLVGSLIPVRSILKVDPASAIN >gi|308165521|gb|AEHO01000019.1| GENE 10 7049 - 7513 284 154 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01869 NR:ns ## KEGG: LCRIS_01869 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 153 21 172 174 121 43.0 1e-26 MLDEFSNYDLNQANVARIVKEAGIARGAFYTYFDDLEDAYLYVYNKAMLQIHNPIKMDKP EFDADLFYKMAYELVCNIEKSKYKKLLKKHMLVNESLLIHNFQVENQKAIHMDTKTWSAM VLTHETIKLALFDLEHKENYFRKLKQGLDCLRRV >gi|308165521|gb|AEHO01000019.1| GENE 11 7713 - 8198 642 161 aa, chain - ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 11 156 4 149 151 132 45.0 2e-31 MFNFFKNKGLEVDAAVDGGLIPISEVNDDVFSTKMLGDGYAIKPISGDIHSPVEGDISTL FPTKHAIGIKTKEGLEILVHLGIDTVELNGAPFQMKIQKGDHVIAGQLLGTMDLKQVVDS GRDDSVIVVYTNMDLIESISPVQKGSVNSGDRVQTITFKKK >gi|308165521|gb|AEHO01000019.1| GENE 12 8203 - 8712 450 169 aa, chain - ## HITS:1 COG:no KEGG:LJ0638 NR:ns ## KEGG: LJ0638 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 156 1 156 169 209 71.0 3e-53 MWTMTKNKVTSFCDQIMERLHLNTRSILKWYSIILFVAPLLYWGLLEFRLVMTQVSFVNM LHKHPAMAVSVIIAITDFLLGYYCWIKKDEIVNNRTRLRTFWILQCFCQLLVGNIICFLL SIFGLRALPSSKVKSTTVSYFKVTIIISTLLYALCILLLGLIGLQGLRG >gi|308165521|gb|AEHO01000019.1| GENE 13 8690 - 9079 305 129 aa, chain - ## HITS:1 COG:no KEGG:LJ0637 NR:ns ## KEGG: LJ0637 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 129 140 268 268 182 72.0 4e-45 MIGKKAVMLPSAIEELKMVSKRATEGDMLFIVSYSGDNVQIRDEISKIQLINNKIITVSF TTLRPAELVSLVDYSFFFRTLKFEKFWVEGDATIDSFSPAYTFIDLLIAKYYQWEQSKGE LDNVDYDKE >gi|308165521|gb|AEHO01000019.1| GENE 14 9266 - 9496 227 76 aa, chain - ## HITS:1 COG:no KEGG:LJ0637 NR:ns ## KEGG: LJ0637 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 76 1 76 268 127 88.0 1e-28 MTDLKRRVWEKSGELSTSEKEIFRFLFSNSKLCSHLSLAKLAAKLYVSESSIFRLCKKIG LSGYSELRFELSDLAH >gi|308165521|gb|AEHO01000019.1| GENE 15 9831 - 10622 784 263 aa, chain - ## HITS:1 COG:BS_glvC_1 KEGG:ns NR:ns ## COG: BS_glvC_1 COG1263 # Protein_GI_number: 16077887 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus subtilis # 3 172 275 445 452 169 47.0 5e-42 MEGFQLYGNEKVFLVPFICWAFYATAKKNKKKQTSALLIPAALTSVLTGITEPIDFTYLF AAPILWVVYSVMAATMNTIMWCFGLRGLMSDGAIGIASMNWIPLWSNHWHVYVMQFIVGI VCGLLTYFIFKLMIEKFNYVTPGREADNEDVKLINKKEYKEKMAQQKIAQQATGVAESDP YIARAQAYLELLGGSSNIEEISSCATRLRVTVKDPDKLGSDAQFKSNKAVNVVHHGKAIQ VIVGLDVAQVLERMQALIEKNGN >gi|308165521|gb|AEHO01000019.1| GENE 16 10676 - 11452 577 258 aa, chain - ## HITS:1 COG:BS_glvC_1 KEGG:ns NR:ns ## COG: BS_glvC_1 COG1263 # Protein_GI_number: 16077887 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus subtilis # 1 258 1 258 452 293 58.0 2e-79 MMQKLQRFGAAMFVPVLLFSFAGIVVALGCLFNNATIFGSLASPTTGWYKVWDTISAGGW TVFNQECLLFVVGLPIGLANKSHGRAAMESLITYLTFNYFVGAMLSHWGAFFGVPNFNKI TITANATNGGLTQIAGIKTLDTSIIFSLIIAGIVVYLHNHYFDKKLPEWLGTFQGSTFVY ILGFFVMIPVAFLTCLIWPKVQLGINSLQHFIVGSGFVGIWIYSFLNRVLIPTGLHHLVY IPFQFGPAVVAGGLQHIG >gi|308165521|gb|AEHO01000019.1| GENE 17 11536 - 12522 701 328 aa, chain - ## HITS:1 COG:Z5177 KEGG:ns NR:ns ## COG: Z5177 COG1486 # Protein_GI_number: 15804281 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli O157:H7 EDL933 # 1 328 116 440 440 371 52.0 1e-102 MAYGLRSIPAIIQIIDWMEEYSPNAWMINYSNTIAIVSEACRRLRPHSKVINICDMPIDI MTRMAQICGLKDYHDLDFNYYGLNHFGWWKGVWDKKTGKDLMPELKKYVSKNGYWVGGDF DKNTESSWKETFKKAADCYALEPNTLPNTYMQYYYYPQYEVKNADPNRTRTDEIREYRQK IVFGECERIVKEGTAENNMWDRNETHSEYIVDICHAIAYNTGEKFLANIPNNGAISNMDP DSIVEVPCLFTSHGVEPISTGEAGIFQRGLMMEQQTCEKLVVDAYEQHSYEKMWEAFALN KTVPDALVAKKILDDMIPENKPYWPILK >gi|308165521|gb|AEHO01000019.1| GENE 18 12559 - 12879 328 106 aa, chain - ## HITS:1 COG:Z5177 KEGG:ns NR:ns ## COG: Z5177 COG1486 # Protein_GI_number: 15804281 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli O157:H7 EDL933 # 7 106 3 102 440 159 72.0 2e-39 MMKDNRKFSVVIAGGGSTFTPGFVLNLLKNQDRFPLRKIKFYDNDAERQKKIGDAVSIIM NERAPEIEFEYTTDPKEAFTDVDFVMGSIRVGKYHMRSLDEKIPLR >gi|308165521|gb|AEHO01000019.1| GENE 19 13283 - 14503 1238 406 aa, chain - ## HITS:1 COG:SP0411 KEGG:ns NR:ns ## COG: SP0411 COG0172 # Protein_GI_number: 15900330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 400 31 424 424 526 66.0 1e-149 MVAIDVKRREVLTKTETLKNKRNEVSAQIAQAKKNKENADDAIKEMREVGQEIKALDVEV SELTEKQKYILLRLPNFPDDSDPIGPDDSYNEEVRKWNEPTKFTFEPKAHWDLGTDLNIL DWDAAAKVSGARFVYYKGAGALLERAVFNFFLDENVKAGYTEVIPPYLVNYDSMQGTGQF PKFTEDVYTIVDNDDPDKPRELTLIPTAEVPLVNYFRDKILDIKQLPINVTAMSPAFRSE AGSAGRDTRGLIRMHEFRKVEMVKICDEDSSWQELDKLTKNAEHLLQKLELPYHVVALST GDASFTSAKTYDLEVWMPAQNQYREISSCSNCTDFQARRSLIRYRDEAGKLHLAHTLNGS GLAVGRTVAAILENYQNEDGTVNVPEALVPYMHGMTVIKPEPKFGE >gi|308165521|gb|AEHO01000019.1| GENE 20 14839 - 15336 242 165 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116514699|ref|YP_813605.1| acetyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 3 147 5 143 164 97 40 2e-19 MSRIYLRKIIPSDIKTLYKWGQDPLYHNTACFEKMTSMAQAKVATDCYMARKYSYAIVLA ETKQMIGLIELYNHVPFNGAQPICEVGFLLQKDYWHQGLMKEAMDKIINFAFNKLELKQV WAVTFADNSNAQSFLEKYGFEYVKTVDTFIEEIFRKELYFVLTDR >gi|308165521|gb|AEHO01000019.1| GENE 21 15340 - 15939 555 199 aa, chain - ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 7 197 10 201 201 148 41.0 6e-36 MSAKDSRKLINIITVISTILMILLGIYWYKMGILTDQVKMKEYLSDKQVIGPLIFVFIQI IQVVIPIIPGGVSLVAGVIFFGPLWGFIYNYVGIVIGSIIIFFLARFYGKPFILHLVSEE TYNKYMKWTVNQKKFNHIFAWCIIAPVAPDDILCMIAGLTEIKVSTYIMIIIFGKPWTIL AYSLGLVYGSKWFLKILGK >gi|308165521|gb|AEHO01000019.1| GENE 22 16084 - 16863 826 259 aa, chain + ## HITS:1 COG:L141530 KEGG:ns NR:ns ## COG: L141530 COG0657 # Protein_GI_number: 15673289 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Lactococcus lactis # 19 257 15 253 257 81 28.0 1e-15 MVSIIKDIKYDDRNNLFTDIYFPEQTSTTNKILIFWHGGGWIKGSKEACQELGVRFAKAG FTTMIPEYRLASQSTFPGAHQDSKTFVEWLLNSQYVTMPRSKQPIYQIGASVGATMALFI AGQFGFDTVCWSAPLDFSEWIKNHKDTVASTDAASELHLTNPRQIKDSFYKFFTVSYAGG EDPSILQKMDAYTYDLDKLNRLLMINSEHELTPLDSVLKFAKTLAQQNKALNLILLPGDQ HAMGYANKYIDKSIEFLLH >gi|308165521|gb|AEHO01000019.1| GENE 23 16926 - 17768 831 280 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1627 NR:ns ## KEGG: LGAS_1627 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 11 267 60 332 336 187 40.0 3e-46 MHENSENKKEKQQNDTVLLMVEWIKHNAVLVFVLGIVLMIITSIIAFMGWAVLVCLLMLL YFTCANEKIAEEYTVDRKLEEKVDVVGSSLVNSVENSRISNRYRRYRQSTREPRTWLQWG VIAMALICLVTIFYGPFASDALSVVQGHTISNTLLFAFNRFSALHYRLIAWVMWLFIVAI PITIIIITLKNIKHNREFAFVLSLLETIVLLIWLFELVFLNVGIKVGLGTITGSRLYRIQ TNIISFGVSAYLLIVASCITSVVTFKSWFSYIKDKNKNTK >gi|308165521|gb|AEHO01000019.1| GENE 24 17790 - 18698 590 302 aa, chain - ## HITS:1 COG:no KEGG:LJ0665 NR:ns ## KEGG: LJ0665 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 294 1 306 314 138 31.0 3e-31 MKIKRILVAIAISFCSFILYITNVQHLKSMKLIVSKPKSVQLHNSSSSSLATKSQSEEDF IVAKNSDHQLIEPIKNNVDLMTPFQVAVQGLNFNKKASIYNKKNSLEVGNILKLFILLAY HKALLEKNPKLTKPYKVMAGDVKGKGLVVNTSYAYPFLIQQMMYHNSNDAANILVKVLKL EYINKVAAELGAKSTKIINSFDQKDVGQTTTADMITIFTKLYRRQILTVNDCNLILRLLN TYPNKGLAAGIPGICHYISDDNASCCLVNTNGKVYIIAAIGGDKNRFNQLGKDVYNVIAM HK >gi|308165521|gb|AEHO01000019.1| GENE 25 18870 - 19787 1113 305 aa, chain + ## HITS:1 COG:alr4655 KEGG:ns NR:ns ## COG: alr4655 COG2971 # Protein_GI_number: 17232147 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosamine kinase # Organism: Nostoc sp. PCC 7120 # 4 288 3 305 320 95 31.0 1e-19 MFKYMIGIDAGGTHSTAIAYDEQGKELGRAESGPGQINNDYNLGIKNITVAINELRNKID GDCIKILAGIAGLSVVGNAPEVAATISSMVGNIPTRAITDSLLALYNGLEGTDGALVIAG TGSVVNGRQNGSLITVGGYGSLLGDEGSGYAITKAALVTALSKWDQRQPSSLIDLFIKIW NLDNMNDAPAKFYTMTSPQVASYAVEIAKLADSGDAEARDIIQEQAHLLARDILMCLDRY QEPKPMRIALTGSVLSNNAMIRSFMEDEVKEQYPDAVFSVSNGENARGVIYDKSKDYRYF TSSKN >gi|308165521|gb|AEHO01000019.1| GENE 26 19851 - 20762 806 303 aa, chain - ## HITS:1 COG:no KEGG:LJ0652 NR:ns ## KEGG: LJ0652 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 70 299 53 280 282 329 80.0 1e-88 MARRKKPQKRNDLSRSIFWLICIILAFTFWGTKRSAYHTHTDNYRTQFNKQVPSSSHRDN STKINATSEIPTAKIAKSAYGGLDDSDYQKLAACNFKSGDAAYVYVNNNHSTLIKNAWKI NKVIYSNLDSLNRTSHSNTAFLESRNVANDSLRVRQFINPTGWHSNRQNAMRTQIYNRGH MIAYSVSAGIDQSGRYNPNNQSGDQNNIKNLFTQTAFSNQKIQTIFESKVRKALRMGQKV IFQATPIFRGNELMARGINLQAISVNGWLDFNVYIFNVQPGYTFDYATGRAKVARDFSVG WVK >gi|308165521|gb|AEHO01000019.1| GENE 27 20782 - 22077 1161 431 aa, chain - ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 6 415 1 409 412 386 47.0 1e-107 MGEDAMNDIDTAYIEQKFVEYCKVNTRSDPNNNCVPTTKGQVELLMIIKNELQELGLKNI SYSAKDSYLVGLLPSNTATLTTAVGFVAHVDTADYNAENVQPQIYRNYDGEKIYLDPQKD RVLDPAEFPSLKKHIGETLITASGSTLLGADDKAGIAGLLCMLKFFKNHPNAEHGDIWVA FGPDEEIGQGAKRFDISRFPVEFAYTLDNGDPGDIAYETFNAASATLQFKGTIVHPGEAY GLMVNATTMASEFIESLPKDQVPEKSKDFEGFMMVLSNNGDVGYAKVELIIRDFDTDSFL AKKQMLIDLVDAFNKKYGENRVEISMHDQYKSPGDLIKQYPYVVNLVLHAYEKMGLVPKI IPFRGGTDGDFISEKGIPTPNLFNGGANFHGPYEYVSVESMSLLSKTLITIVQLHLKMCD HRDNTPLKRKY >gi|308165521|gb|AEHO01000019.1| GENE 28 22219 - 22779 672 186 aa, chain - ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 186 1 185 185 183 54.0 2e-46 MTTAIELKKGMIFKQDGKLIEVLVSNHHKPGKGNTVMQMDLRDVMSGSVVHKTMRPSEKV ELVHVDLKKAQYLYDDEVNFIFMDTATYEQYEIPKEHLSEESKYLLPNINVDLKFTDEGQ LIGVGLPTTVNMKVVETQPGIKGATAASGGKPATMETGLVVTVPDFINEGDELIINTDTG EYKSRA >gi|308165521|gb|AEHO01000019.1| GENE 29 22792 - 23601 713 269 aa, chain - ## HITS:1 COG:SP0839 KEGG:ns NR:ns ## COG: SP0839 COG1072 # Protein_GI_number: 15900726 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Streptococcus pneumoniae TIGR4 # 37 268 75 306 306 195 40.0 9e-50 MWRHCVSPGANSLDFLILLIEKSYTNYLNKQKNNLQFVTKSIVNPPFVVAVTGSVASGKS TLSKKLKLALQEKYGNDNVDLVSMDGFIMSNAELDDKGLMSQKGFPSSFKWDAIVNFLTE IKRRRPKVPYRLYSQTISDLVPDKIAYVKQPDILLVEGINLLQTYGKQKVLTDFIDFSIY LDADESLLESWFMDRFHQLLVVNANSPDNFFYRWVKMPTTEADRLAHQVWRDVNLKNLHE YILPSKERADLIVKKCRDHIMTDFYIKKY >gi|308165521|gb|AEHO01000019.1| GENE 30 23722 - 26031 1681 769 aa, chain - ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 9 761 4 765 774 486 38.0 1e-137 MVWVNILTKKSEQQKEQEHLDHVLSLIQDRIKIVEKSISGAQSEAQDLNAHFFDDLKLDY DGYSTSMETALSIHQQQQLLEERQNAWQHATKQLSTLQRLNKRPYFARIDFQEQNEKPET IYIGLGSFADKNDQFLIYDWRAPISSIYYDGKLGSVTYYAPDGEQEVLMTKKRQFSIKDG QIINMFDTNESIGDQMLINVLNEKSSTQMKSIVTTIQREQNKIIRNTTADLLFVQGSAGS GKTSAILQRIAYLLYRYRGNLVSSDVIMFSPNQLFNDYVKNVLPEMGEQNMVQMTYRQFV SRRVPAFKVESLFDQFEDQNKNPKIAKLKDSLEFFEAINHYSKHLIKHGVVFKNIYFKDK EKPFFDKDYIKDIYYSFNENYNLRNRIEATREKLVARLNESISAEAKKAWVAKYLESISK EELNKLYDRPDQEFASSTEEERFLSKKIVIKSLKQVLRKVNANSFFNIRAQYLAFLRAIP KMIDLQQYGISEKEWYDHIELVKQNFVRKQIKITDISSYLYLYDVITGRRVNYEMRYAFI DEIQDYTPFQLAYLKYNFPRAKFTMLGDLNQAIFTKDDSLTLLDKVKQLFISEKIELIKL TKSYRSTKQITDFTKQILKSGELIEAFDRNGAKPTIWHCDNASAVHKINDILIANNQEKL TTAIITKTLEEARDLTTKLKSESIKVTLIATANQRLVPGVLVIPSYLAKGLEFDAVIAWQ VNNNNYHKDDERQLLYTITSRAMYKLDLIYTGELSDLLREIKADTCKWS >gi|308165521|gb|AEHO01000019.1| GENE 31 26196 - 28286 2560 696 aa, chain - ## HITS:1 COG:BH0131 KEGG:ns NR:ns ## COG: BH0131 COG0480 # Protein_GI_number: 15612694 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Bacillus halodurans # 5 694 3 691 692 992 70.0 0 MANKREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETHEGDSQMDWMEEEKE RGITITSAATTAQWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVTVLDAQSGVEPQTEN VWRQAETYGVPRIVFVNKMDKIGANFDFSVKSLHERLNANAHAVQMPIGAEDQFEGVIDL IEMVADVYDEDQLGAKWETIPVPDEYKEEAEMRRAELIEAVADVDDNVMEKYLGGEEISN EELKAAIRKATLNLEFFPVFAGSAFKNKGVQMMLDGVIDYLPSPVDVKPYVAHEPKTGEE VELLADDDKPFAALAFKIATDPFVGRLTFIRVYTGSLQSGSYVLNASKNSRERVGRLLQM HANTRQEIPEVFSGDIAGAIGLKNTTTGDSLTDPNHPLILESLQIPDPVIQVSIEPKSKA DRDKMDVALQKLTEEDPTFKAETNPETGQTLVAGMGELHLDIQVERMKREFGVEATIGEP QVAYRETFTKVASAQGKFVRQSGGKGQYGDVWIEFTPQEEGKGYEFEDAIVGGVVPREYI PAVDAGLQEAMKNGVLAGYPLIDVKAKLYDGSYHEVDSSEAAFKVAASLALKNAASKAGA VVLEPIMKVQVITPEEYLGDVMGSITARRGTMEGMEDRAGAKVINSFVPLSEMFGYATTL RSSTQGRGTFTMVFDHYAPTPKSIQEEIIKSRGGNA >gi|308165521|gb|AEHO01000019.1| GENE 32 28319 - 28789 762 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518426|ref|NP_964356.1| 30S ribosomal protein S7 [Lactobacillus johnsonii NCC 533] # 1 156 1 156 156 298 93 9e-80 MPRKGNIAKKNVLADPIYNSKLVTKLINHLMVDGKKAKASSILYDAFDIIKEKTGKEPVE VFEEAMNNVMPVLEVKARRIGGSNYQVPVEVRPERRTTLGLRWLVSYSRLRNEHNMDERL ANEIMDAANNTGSAVKKREDVHRMAEANRAFAHYRF >gi|308165521|gb|AEHO01000019.1| GENE 33 28805 - 29212 676 135 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518425|ref|NP_964355.1| 30S ribosomal protein S12 [Lactobacillus johnsonii NCC 533] # 1 134 1 134 135 265 97 8e-70 MPTINQLVRKGRHSKTTKSKSPALNYAYNSMKKEMNYDPAPQMRGVATRVGTMTPKKPNS ALRKYARVRLSNLVEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGALDTAGV DGRKQGRSKYGAKKD >gi|308165521|gb|AEHO01000019.1| GENE 34 29385 - 29891 319 168 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309805132|ref|ZP_07699185.1| ## NR: gi|309805132|ref|ZP_07699185.1| hypothetical protein HMPREF9213_1221 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_1221 [Lactobacillus iners LactinV 09V1-c] # 1 159 1 159 168 200 100.0 3e-50 MKNNYKNNILILILLLGQLSIIWLSLPYILCSKIILILSTGFFSYAIISDFFNQEFYLLL AIIPIISLIIEWKNSFGAFTAGEWKILLILFFVFFILILSKKIGSGDLFYFIIFCGIYGV GISLHILLIACCTALIYIIFHNKNNRSLPFLPFLFLGQWLTLITLLLL >gi|308165521|gb|AEHO01000019.1| GENE 35 29883 - 30548 399 221 aa, chain - ## HITS:1 COG:no KEGG:FMG_1337 NR:ns ## KEGG: FMG_1337 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 6 194 22 210 232 135 38.0 1e-30 MASVWIALFISVLLVHKFRYSKLLLNFVFGSMLCLQLLLIYWYYGEPSTFLHEGLPLFHC RIAAIMIPLMYYMNQKKIAVYFSWLGIIGTTLAFTIPDPSRYVWPHITNVTYIGSHILLM CASIMVIENVETGLRSIDIMSITLAMNTLVLAVDLLLKANYCYLMQLPFKLWFTPNGVII FIIMTFLLICSISFLQKEYEIACKKNLAKKATIKDDTDYLQ >gi|308165521|gb|AEHO01000019.1| GENE 36 30614 - 31795 1215 393 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 174 393 262 465 466 114 35.0 3e-25 MRKKARSYKFSLIILLLLSFLLVIFLLIANNKRKHNRIKQINQTVIYNKTHFNPCVKIYG VDVSKLTIDQAYRKVNKKAVNALMIDGRDIKLIRKDFETITRKKVEDYFNEQKTRLPNYQ KYIFRNKELLDLKGKAKNIADAKVVFEILGKKYIFSRKKYYPKVECYNKAFHFLDDSLLK ARIERLNQEYSTLHKKYHFETPEHGMILVRNESYGWAINSKQLIEAIKSAYINKHSVLKG HNFVYGIGYSSYGKGYGKGNNGLGNTYIAVSIPNQEAWFYKHGKLVLKINNIVTGTAANK LDATPKGVWYIHYKQSPSVLRGKNSDGTPYASRVRYWMPFTLSGCGLHDAAWRTDWSKTA YIKNGSHGCVNIKPSLIKAVWNVVEKDEPVVIY >gi|308165521|gb|AEHO01000019.1| GENE 37 31951 - 32652 850 233 aa, chain - ## HITS:1 COG:L161266 KEGG:ns NR:ns ## COG: L161266 COG0791 # Protein_GI_number: 15672918 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Lactococcus lactis # 100 221 65 187 197 124 47.0 2e-28 MKPLMSRLFKFTLATTIAVTGVVVSNSLKPVKAKAAGVIAKVNYVPGYGIAVWNNVNGGH TTGQYLPHGSRWVVVKTSYDKQGRLWYDLGHNHWVLASYTVSDSTPVSQSASANTSVKAS AQAIINFALKQQGKPYVYGAAGPSAFDCSGLTSYVYKQVTGRYIGRTTYNQLNAGTRVSV SQLQPGDLVFWGNYHVGIYIGNGQYIHSPQPGQSVTVANISSYYYPSYGVRVL >gi|308165521|gb|AEHO01000019.1| GENE 38 32795 - 33352 403 185 aa, chain - ## HITS:1 COG:jhp0304 KEGG:ns NR:ns ## COG: jhp0304 COG0194 # Protein_GI_number: 15611373 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Helicobacter pylori J99 # 4 185 7 187 206 78 30.0 6e-15 MKKIIIIAGPSGAGKTTISNYLQEKYNIPRVLTHTTRPPRAGEQNGKEYYFETDSSFSKL HLFEKVEYGHYQYGSSQESLQKAWSQHDLVSIILETQGVNSYFHKLPIDNICFIYITISD HSKLMQRLIGRGDAPIEINKRINSSEFKRDLQLHGVLKKYAHIVVNDNWQDTKGTIAKLI DQIQH >gi|308165521|gb|AEHO01000019.1| GENE 39 33445 - 33732 418 95 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_09460 NR:ns ## KEGG: LAC30SC_09460 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 88 1 87 100 81 63.0 8e-15 MKKSDIKIDSIVGAKSDEEISKPFEGKVEKIYENSVLLSITSYEPEDETNVSDLNGKIVV SFKNLKKLAKKPSKQAETPTNEIKISKIEAKDEQQ >gi|308165521|gb|AEHO01000019.1| GENE 40 33840 - 34013 197 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309805090|ref|ZP_07699143.1| ## NR: gi|309805090|ref|ZP_07699143.1| conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners UPII 143-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners UPII 143-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 57 1 57 57 88 100.0 2e-16 MQPLTLTKQQRQEIKKQLGSLNKLEIKGLDLHFGGHNRDHLQLAYKLQILFHRNNCH >gi|308165521|gb|AEHO01000019.1| GENE 41 34348 - 34548 226 66 aa, chain + ## HITS:1 COG:no KEGG:FI9785_p9785L.22 NR:ns ## KEGG: FI9785_p9785L.22 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 7 57 73 123 335 83 78.0 3e-15 MEKVNKKKQYLLTNYFGDNHSDDPFARQIEMLDSFNRSGVSTSKLQADLKRQICIFIHSL RKSRYY >gi|308165521|gb|AEHO01000019.1| GENE 42 34578 - 36149 885 523 aa, chain + ## HITS:1 COG:L82520 KEGG:ns NR:ns ## COG: L82520 COG2274 # Protein_GI_number: 15672061 # Func_class: V Defense mechanisms # Function: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain # Organism: Lactococcus lactis # 1 510 155 677 715 129 26.0 2e-29 MSFQKLIKTNLLLFIVIIVLELLFAAGSATSSYIIQFAYNQLVKNILIGFLIIIASSVFL SFVSYIFSSLATYLFSKQTQKYIHSIRHNLISKYFHDKAPKVAEMENELNSNLQVLTKNY ADKSLSIIQSCFLLVTSIGSLLLMNWMLTLLALILSVITLYIPRFTRQRASNATQKVVNR NSKYLLAIEEWFNGLEELRKYTAFNKLNLVMQEVSKNLETSFVKRKKVISIADFLNGCAN SFSQIAITLLAAILFFNHQITFGVIIAAGNFSSMILNCLLTITTSLTRIQSVQELNKQIV ESQKVISSHKEINTDEIYSISTHDLSISFKNGETIHFPDIRIKKGEKVLLSGDSGTGKST LFKLILNKMYPTTGQVIFEDKYGKKISPDYAQIGYIPQDGKLFPTSIINNIIMFNNKLKQ QVKNSIENNDLSKDIASMPNGFETKIDLDTINFSGGQKQKIILARNEIHNFSIILADEAT SAIDSRSSYRILKNLVSSNKTVIVIAHNLTQDMEKLFSRKISL >gi|308165521|gb|AEHO01000019.1| GENE 43 36170 - 37741 1246 523 aa, chain + ## HITS:1 COG:L162870 KEGG:ns NR:ns ## COG: L162870 COG1132 # Protein_GI_number: 15673504 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Lactococcus lactis # 45 522 43 524 529 154 28.0 3e-37 MSFKDIYAVNRIRMISLLVLEFLTSGLIIGVSYINTYQITAIKNRKWQQFIFLITLSLIL FIISYAGLNICQYWIEKQIQQYNHKIRFKIVNHYFYDNKVHNAAEVQNRLTNDLNLIKDS KLAVYTDIPYYLAQIIFASIGLLLFHWSLLIVVLILGTLSFYLPKFLRPTMQAAALKLSQ ANKQYLDTAEKWLDGLSVLQRFSVGAQLSRIMDNASDTLESANIARTGTMQGLAVLNKAT SALLQFALLAVTAILVTNHTVVFGVIVTVESFSSYINMSVKMLATELGQIHSVDSLSNEV NADTAVVEHIGTLQSPASLTTKNVSVKFSNGKIIKFPNLNIKSGEKVLLTGDSGTGKTTL FKVLLGKIKLHTGTINFKNKYGADIKINKVKIRYIPQDPILFPDSIENNITMFNSKLKNK VLDYVKDISFESDIRKMPLGLKTKLNLQKLNISGGQRQKIVLARACIHDDDFILIDEGTS AIDKKATLDILKKLLNSPYTVIFIAHNFNDEMYSLFDREIHLV >gi|308165521|gb|AEHO01000019.1| GENE 44 38142 - 38861 965 239 aa, chain - ## HITS:1 COG:lin1131 KEGG:ns NR:ns ## COG: lin1131 COG0580 # Protein_GI_number: 16800200 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 1 227 1 226 234 210 52.0 1e-54 MSELLGEFFGTMVMVALGVGTGAAVNLKKSYAKNANWFYIIFAWGLAVTFGVYVAANFGS KAHLNPAVTLGMAVGGYFPWDKVFTYIVAQFIGAFFGGLIPYIHYYAHFKETKNEAEGNH VGIFATGPATNSPIFNFIDETIDTFIFVFVLIHLGNFGEGLKPFIAGFLVIVIGLALGPT TGLAMNPARDWSPRLVYTIFPVPYKSTANWSYAWVPMCGPLLGGILAALLNYSLQNYIL >gi|308165521|gb|AEHO01000019.1| GENE 45 38920 - 40185 1293 421 aa, chain - ## HITS:1 COG:lin2697 KEGG:ns NR:ns ## COG: lin2697 COG0766 # Protein_GI_number: 16801758 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Listeria innocua # 3 417 4 414 423 420 54.0 1e-117 MKKMIIHGGKPLKGDVWIGGAKNSTVALIPASILSRTTVVLEGVPRIADVDNLMDLLGEM DVKCKFEETTLTIDPENIKRSPLPAGKIKSLRASYYFMGALLGRFGKAVVGFPGGDDIGP RPIDQHIRGFEALGANVDNEDDKIIITAPEEGLRGAKISLAMPSVGATMNIIMASVTANG QTVIENAAKEPEIIDLAIFLNNMGAVIRGAGTDTIRINGVSQLKAKASHTIIPDRIEAGT YISLAACIGNGIRIHNVITEHLDSYLAKIEEMGVVTDVDEDSIFVYPAGDLKMVQIKTEP YPGFATDLQQPITPLLLTAKTGEGIIIDNIYPKRVGHVPELRKMGGEICVENNIILIHPS SKLKGMDVNAGEIRAGAALMIAGLMADGETVIHNAGNILRGYDRVQDKIRKLGGDITVVE E >gi|308165521|gb|AEHO01000019.1| GENE 46 40317 - 41939 2113 540 aa, chain - ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 531 3 530 535 748 65.0 0 MTKYIFVTGGVVSSLGKGITASSLGRLLKNRGLKVTMQKFDPYINIDPGTMNPYQHGEVY VTDDGTEADLDLGHYERLVDVRTSKYSNVTTGKIYQEVLEKERRGDYQGDTVQVIPHITD MIKKKIMRAGLTTDSDVVISEIGGTVGDIESTPFMEAIRQMRREVGDENVMYIHCTLVPL LHAAHEMKTKPTQHSVATLRSIGIQPNMLVLRAEQSIKQELKNKISNFTDVPVERIMESI DEPSLFDVPLSFQKQGMDQLVCDYLHLDSPRKTADMESWKRLDQRAKNLEHTTKITLVGK YVELEDAYISVTEALQHAGYLYSTKIEVDKVQAENITEDNIADIMRGSEGLIVPGGFGTR GLEGMITAIKYARENDIPFLGICLGMQMASVEFARNVLNLKGANTTEADPKTKYNIIDIM ADKRDVENIGGTLRLGLYPATLKKGTKTSAAYDGESVIQERHRHRFEFNNEYRQAFENAG MIFSGVSPDNRLVEIIEIPKNRFFVATQYHPEFLSRPQRPEGLFKAFIGAASGLPISEFN >gi|308165521|gb|AEHO01000019.1| GENE 47 42047 - 42547 787 166 aa, chain - ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 120 16 135 191 94 52.0 1e-19 MIEVARAILQDSGKRMAFADIVNAVQQFLGKSDEEIRDRLPQFYTDLNTDGEFISMGDNV WALRSWFPYESVDEEVNHPEDEEDLPRKKNHRKVNAFIADSDSDDIIDYDSDDPEDDDLS LDETAADDYSDDSDLDDADDDDELDDGLEGQLSELHKDDLDSDDEN >gi|308165521|gb|AEHO01000019.1| GENE 48 42612 - 43043 305 143 aa, chain - ## HITS:1 COG:no KEGG:FI9785_297 NR:ns ## KEGG: FI9785_297 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 2 139 3 139 139 113 44.0 3e-24 MKKVKVEITSIIKQEGQVEHFKCTGCGTLSCDNDTYRIEYMEKNQSAEIPVKLLYKTDEL IMQRGTIENNNYNMMKFMANEKKNCRLIAAGKIMDLTSFTKSINFLKKNANNIQLKVEYQ LFSDIYLIGDYKISIDCFEDTQS >gi|308165521|gb|AEHO01000019.1| GENE 49 43182 - 44558 1527 458 aa, chain + ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 11 445 2 427 434 468 54.0 1e-132 MRDINNINNFHEQVLRDPVHTYIHIKNPIIFNLVNTPEFQRLRRIKQLGPTSFVFFGATH TRFEHNLGVYELTRRICNIFTQKYATQQSNDGLWDPSNNLLVECAALLHDLGHGPYSHTF EHLFNTNHELMGQKIILDENTQINKILKQVSPDFPQKVASVIAKTYPNPQVVKLISSQAD ADRMDYLLRDAYFTGVSYGAFDLTRILDVIRPYKNGICFLDKGIHAVEDYIISRYQMYQQ VYFHRIGRSMEVILHHLLQRAQEIYQRNDIKDFTVTPQLEAFLANKWSLEDYLALDDGVM ETNFMLWTKSGDKILADLAESYLYRHPLESVKVNNQTKYLIPKLNELIKNAGFDPQYYTA TNSAFDEPYDAYKPTGKNAHSPIEIMENDGTLVELSELSPLVKALNGTVQGDERFFFPKT MIKSLGDVQLFQPLYSEFQSYINNNSLQDPQKIKGTDF >gi|308165521|gb|AEHO01000019.1| GENE 50 44587 - 45279 939 230 aa, chain - ## HITS:1 COG:NMB1604 KEGG:ns NR:ns ## COG: NMB1604 COG0588 # Protein_GI_number: 15677454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis MC58 # 3 225 2 224 227 308 65.0 6e-84 MSKLVLIRHGQSQWNLSNQFTGWVDVNLSDKGVEEAKKAGRLIKEHGLQFDQAYTSVLTR AIKTLHFALEESGQLWIPETKSWRLNERHYGALQGLNKKDTADKYGDEQVHIWRRSYDVL PPVIEDDSEYSQAHDRRYAHLDPHIVPKAENLKVCLERVMPFWEDHIAPDLRSGKNVIIA AHGNSLRALTKYIENISDEDIMGLEMKTGEPVVYTFDNELNVVDKEKLDD >gi|308165521|gb|AEHO01000019.1| GENE 51 45467 - 45958 442 163 aa, chain + ## HITS:1 COG:L52568 KEGG:ns NR:ns ## COG: L52568 COG2461 # Protein_GI_number: 15673592 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 8 130 316 436 490 63 29.0 1e-10 MPNNKINLSGGSLTLEQLDAIFKTIPQEFDVVDENDTIVWSSMNEGRLFERTTANLGKNV LDVHAEKSKPHVKRVLEQMHNNERKSLSINLWSKRWSKNQPINVSFYSLHNKSGDYIGCV EVTQPTKDYQWKWRRLKNFLHIIFKKDRLHFKNNKSKIITSNL >gi|308165521|gb|AEHO01000019.1| GENE 52 45977 - 46777 467 266 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0165 NR:ns ## KEGG: LGAS_0165 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 266 1 266 275 176 37.0 8e-43 MNKRHTLLFTLMLVCCMTSGCAKKAMNNQASNDNIRTVATTTLKHAFNQSFNSGHFIETV QSKKMKQNSSMTALFKPNLVNITYSLNQGNKVNSEQFWLNNNMVYILLPQNKGKWIKNTN TNDKFSPDQIFNRFNAKNFSNLNQVMTNKAKIKISNGNYIFTYSKTDTSAWRSVNNLVID ALNTPGSQNMNLARAVKVSEPTRINFVYIINKHTNKIVRIDLAADFVFSNDYTCSWHAIY DEFGQHDTLAIPQNIVKSAFDIRKQK >gi|308165521|gb|AEHO01000019.1| GENE 53 46814 - 47632 725 272 aa, chain - ## HITS:1 COG:BS_fruB KEGG:ns NR:ns ## COG: BS_fruB COG1105 # Protein_GI_number: 16078503 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Bacillus subtilis # 1 248 1 288 303 62 23.0 9e-10 MIYTITLNDDKNNTCCGTYVSLLLKKKDIESIALGIIPNDYQKAEKLLDDADIKHDFIKI DATQLDLFGEDKQVAISAQQKLLDNLKCLNKGDILVICGSFAKGISPVYLSDMAAIAHKK GAYLVVSVPYATVMDILPLQPFLIQLTGQDIKNIFDKVAGRQLLYQSAHYMVAKGASHVL CTLDKQHIAVINMTQGFVAEVPDVKKVSGVGCQESLLATFLTGILKNHMTITNLANSVAA YADSLQKEGLTDYSNNLALQRKVIAQKIMFDD >gi|308165521|gb|AEHO01000019.1| GENE 54 47849 - 49114 617 421 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 4 419 6 415 418 242 36 6e-63 MEEKMDILEDLKWRGAINQQTDEQGLREYLQQHKDLTLYCGTDPTGDSLHIGHLIPFMIL KRFQMAGYHPIILIGGATGAIGDPSGRKTERVLQSEEQVRHNEKCLTSQMEKLFGTENFE IVNNASWLSKLTLLDFLRDYGKLFQVNTMLNKDIVASRLATGISYTEFTYQIMQAIDFYY LNKNKNVTLQIGGGDQWGNITGGIDLIHRIEGADHPAFGLTIPLMLKSDGTKFGKSAGGA IWLDPEKTSPYEFYQFWINQDDRDVIKYLKYFTFLSHQEIEDLAISVEKEPWKRLAQRKL AEEVTKFVHGEAGLRDAQFITNALFEGNIKELSVKQIEQGFKNAPYVEISKESKNLVDLL VETGIEKSKRQAREDINNGAIYVNGSRQDDCDFLVDVPNSFEGKFVIIRRGKKKYTLLKT K >gi|308165521|gb|AEHO01000019.1| GENE 55 49344 - 49976 327 210 aa, chain - ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 7 162 1 163 213 67 31.0 2e-11 MAWVIVMYNLIALIVGYLFGNILCAFIVCKIKFGMNPTQIGSHNPGTANVGSIFGKKWGL LTCVGDIVKAILALILVLIVCPMHISLAYCGLGLMLGHAFPFWNNFNGGKCVAVSLPIVI FFDWQWGIFCIIIELLLMIILKNLAVSPVISLLIYSIVIFVIYSNCAGILFLIGWCVMLY KFRNDLVAYCKGEGKRTDILFLFKRVLKHK >gi|308165521|gb|AEHO01000019.1| GENE 56 49964 - 51052 921 362 aa, chain - ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 26 319 8 303 304 180 32.0 4e-45 MEEKRRLSRVEINHQREKKKRVSRWIKYIIGIIFLFACIYVTAVYLKTKNAFDKTYDPQN SVTQTGFSSKKKFAVLLLGTDTGALGRHEKRGNTDTIIVATVNPNDKKVSLMSIPRDTMA EMIGSPKFSVHKINAAYNIGGPKMAMETVSKLLNVPLKYYITINMGGMTKLVDGVGGVDV VPPLTFTYDGCSFTKGVKTHLDGKKALAYARMRYDDPQGDYGRQLRQRQVIMSILKHSIS FDTVRNLDEVLNTASNSIKTNIRFDSFISIFKNYRDCSNNMSNDYLHGNGAMIGDASYQV MSNKELNRVSKILREQLGLEYVELDNNETYQNSRNKQFDWLSGNQNQPYYIYEPNSNKLW HG >gi|308165521|gb|AEHO01000019.1| GENE 57 51088 - 51723 600 211 aa, chain - ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 200 1 201 214 192 46.0 3e-49 MKIMITGFNPFNGEKVNPAQEVLKFLPDTIKGHRLIKLNVETSFEKAASQVYDALLAEMP DYCINIGQAGGRSGITPEKIAINWVDASIADNMNYQPKGQKIVAKGMDGYFTQLPINAIV KNIRNSGLPAKVSNTAGTYVCNYLFYKVQYWRHTEFPNLKGGFIHIPYLPSQVLQSNQPS MSLNDITNAMMIMLETVIDYDGLKDITSLYD >gi|308165521|gb|AEHO01000019.1| GENE 58 51806 - 51985 220 59 aa, chain + ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 3 56 2 55 183 64 46.0 4e-11 MSKQALLIIDYTNDFIDDHGALSCKQPGQILENEIVSLANQFLQQGDFIILPTDLHIKK >gi|308165521|gb|AEHO01000019.1| GENE 59 52411 - 53187 714 258 aa, chain - ## HITS:1 COG:SPy1828 KEGG:ns NR:ns ## COG: SPy1828 COG4858 # Protein_GI_number: 15675655 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 43 244 6 209 218 80 30.0 3e-15 MSLKEKNAETIKAQKLHLQKQAMQINKVNDIEHASADDLYALLSNKNRDYVFKLKKQLAD QGKQTEEQVAILIDKLLPEIVVAQKKGVTAVNYYGKSPIEKAYELLHPVEKPKETSFTML VLDNILLYLTCFLGMFGLIQMFSNPKNNSQNMGIITIMSVGIIFGILMAYYNRMLAMDKK DRPAVWKLIAYGVVMLVGVYVWIAIVSVVPIFRPINIVLPAVVNVGMGVIAFVLRMYLKK KYNIIDPLRAKQLSKYNK >gi|308165521|gb|AEHO01000019.1| GENE 60 53269 - 54300 1300 343 aa, chain - ## HITS:1 COG:SP0004 KEGG:ns NR:ns ## COG: SP0004 COG0012 # Protein_GI_number: 15899953 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pneumoniae TIGR4 # 1 333 1 338 371 416 65.0 1e-116 MSLTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIEPNVGMVEVPDKRLARIQELIPA KKVVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIVHVVRAFEDDNITSVTGKVD PEEDINTINLELAIADLDAVNRRIAKVQKVAQQGDKAAKAEMAVLEKLKPVLEEGNAARS IEFNDDEQQIVKGLFLLTTKPVIYVANIAESSMADPESDSLYQIVKKHAESENAEALGIS AATEEEIASMDESDRQEFLEAEGVEESGLDRLIKAAYHILGLRTFFTAGGTETRAWTFRD GMKAPQVAGVIHSDFERGFIRAEVVSYDDLDKFETMQKSQRSW >gi|308165521|gb|AEHO01000019.1| GENE 61 54313 - 54564 372 83 aa, chain - ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 2 61 5 64 65 81 56.0 4e-16 MYQLADVVQMKKPHACGENQWEVLRIGADIRIKCLGCGHLIMMSRADFNKKHKKVLRTAK DPVNLKSEFYVPKDKIIIPNINN >gi|308165521|gb|AEHO01000019.1| GENE 62 54579 - 55457 1103 292 aa, chain - ## HITS:1 COG:BS_spo0J KEGG:ns NR:ns ## COG: BS_spo0J COG1475 # Protein_GI_number: 16081148 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 9 285 3 277 282 254 52.0 2e-67 MEKRSKGFKSLGRGLEALFDDGPKIKDGEEIRDIKLDDIRPNPYQPRKNFDDKGLQELAE SIKENGVFQPIIVRKSVEGYELIAGERRFRASKIAGKETIPGIVRDFDEAKMMEVAILEN LQREDLTPLEEAQAYETLQKNLGLTQEDVSKRLGKSRPYIANYLRLLTLPPKTKRLLQYG KLSMGQARTLLGLKDKSQIDGLAKKVADEGTTVRRLELLVNKINTKSQEQSRKVTNKSKF IAASENKLSDKFGTKVNISSSNRGNGHLSISFKSTEELNRILDVLGIDLDKE >gi|308165521|gb|AEHO01000019.1| GENE 63 55441 - 56214 736 257 aa, chain - ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 250 1 250 253 329 64.0 4e-90 MAQVISIANQKGGVGKTTTTINLGASIAIRGYKVLIIDTDPQGNATSGLGIEKSSVDQDV YNVLIDEISMSKTIHHTSTPNLDIVPATIQLAGAEIELTSLMARETRLKQGIDEISDQYD FILIDCPPSLGQLSINAFTASDSILIPVQSEYYAMEGLSQLLNTIRLVQKHFNKNLGVEG VLLTMLDARTNLGADVVKEVKEYFNKKVYKTIIPRITKLAEAPSFGKPITEYAPKSRGAQ VYDSLAKEVLKSHGKKI >gi|308165521|gb|AEHO01000019.1| GENE 64 56217 - 57062 933 281 aa, chain - ## HITS:1 COG:BS_yyaA KEGG:ns NR:ns ## COG: BS_yyaA COG1475 # Protein_GI_number: 16081151 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 15 279 28 283 283 199 45.0 4e-51 MSLFFSHKDKLPENKKITDIDLDNIVPNRYQPRRAFNDETIAQLAQTIQEQGLLQPIVVR HILDSDKYEIIAGERRYRAVKLLKWATIPAIVNSMADEQVASLALIENLQRENLNPIDEA KAYAQLMKINNLTQEQLAHQVGRTQSYIANKIRLLKLTPKVQSFLVAQKITPRHGRALLT LSASDQDRAVSEIVKKDLTVKETENMAQDIDRYFSNMGQEGATKAKASRKVTVKTGSDFT VQINTIKQAIKMVKDSGMIVKQHENKSKDSYKITIEILKGE >gi|308165521|gb|AEHO01000019.1| GENE 65 57083 - 57802 656 239 aa, chain - ## HITS:1 COG:BS_gidB KEGG:ns NR:ns ## COG: BS_gidB COG0357 # Protein_GI_number: 16081152 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Bacillus subtilis # 1 239 1 237 239 248 52.0 9e-66 MNSDIFKELLLKQGIELSARQQEQFRTYYHQLIVANEKTNLTRITEEDEVYLKHFYDSLT PIIKFREIISNAESLCDVGAGAGFPSVPIKIIYPDIKLTIIDSLGKRLTFLDKLVKQLGL DNITLVHSRAEDAGRNIKLRENFDVVTARAVARMSVLSEYCLPLVKVGGYFVALKGPKLS DELFEAQNALTILGGQIEKTCEFTLPDSMDDRTLVAVKKIKKVSNKYPRQAGIPNRKPL >gi|308165521|gb|AEHO01000019.1| GENE 66 57956 - 58363 290 135 aa, chain + ## HITS:1 COG:no KEGG:LJ0553 NR:ns ## KEGG: LJ0553 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 127 1 126 178 112 48.0 4e-24 MIILLLVLAYLIYQTKKGFQIGFAQRIINLVFSAIIFSIAVIFQNPLGDWLFMEFSNKTP NLNSTNNSSDLILYHFIGFFIILFIGKIIKRFIKKRLPKREHSKHHLIGLLDSILGACIS FFCGIFLCIYHTIYV >gi|308165521|gb|AEHO01000019.1| GENE 67 58530 - 59315 1072 261 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 14 258 53 297 298 123 31.0 3e-28 MQEPIVLDHIKIPNARDLGGYLGADGRKILKKRLLRTGKIIDLSNDDKKFLINYGVKTVI DLRTPSEYNVNPDTPIEGVEDVHIPVHRDAKLDTKLIAMRQTYDKIQYAGFKSMCYQYRR SITEPFSQNAFKKILETLASQKDGATIFHCSEGKDRTGLTTVFILYLLGVNWETIRQDYL YSNFTLRDYQAAMDKKIIAEGGNDILRSNIRSLAGVANEYLDTALLTIKQEYDGIDNFIH NQLGLDQEFIQEFRNLYLEVK >gi|308165521|gb|AEHO01000019.1| GENE 68 59333 - 59893 681 186 aa, chain - ## HITS:1 COG:L171116 KEGG:ns NR:ns ## COG: L171116 COG0431 # Protein_GI_number: 15672349 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Lactococcus lactis # 2 177 1 172 270 139 46.0 2e-33 MLKLIAIVGTNAEFSFNRFLCQYIAKRYGDKFNIEVCEINDLPLFSKDDYPNEAVQNFRK KLRLADGVIIATPEYDHAIPAALKSAMEWTGKHSLGSGNDVMRLKPTMVVGTSYGVQGAS RAQEDMREILLSSDEGALVLPANEILIGYAATNFDKQSHDLINKTIIKQLDVAMDNFYQF INQWNK >gi|308165521|gb|AEHO01000019.1| GENE 69 59887 - 60444 463 185 aa, chain - ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 180 1 183 187 157 44.0 1e-38 MKIVALVGSNANFSYNRELLKFIQKHYIDNYEIKLAEIKNIPLFCEGLAEPDSVKNLANQ ILDSDMVIIATSENQHSVSSALKSVIEWLSSVEHPFLNKPVMVIGVSSQHTGSARAQVRL KNVLASPGVGAIVYNGNEFMLGNASEKFDEDGNLDSATVEFLDKFWHQFMDFYQTINGRK LDNQC >gi|308165521|gb|AEHO01000019.1| GENE 70 60457 - 60678 253 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501216|ref|ZP_05744118.1| ## NR: gi|259501216|ref|ZP_05744118.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_03320 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0713 [Lactobacillus iners UPII 143-D] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0713 [Lactobacillus iners UPII 143-D] # 1 73 1 73 73 115 100.0 8e-25 MEDNKKTIVLKFNTEEHTIDMNFSPDLTDEMEIGYILSSSFLSFAAHQGVSKEVLHDIID DQYSEFLSQNNED >gi|308165521|gb|AEHO01000019.1| GENE 71 60776 - 62188 1344 470 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 7 467 8 473 474 283 35.0 5e-76 MIKKVGRSACTSILIGKKATIDQSIIIGRNEDCKTAWPKHLAFNQHQVKINNIFKSKANK FTIDLPNEIFSYSSTPEWTDQYGLFEEDGFNEYHVAMSATESAYANERVLACDPFNEETG ILEEAMITVVLPYIKTARDGIKRLGNIVETHGAAEANGILFADKNEAWYMEIGSGHHWVA QRIPDDSYAVVANQLSIQIIDFNDSDNFMYSNNINQFVIDHNLWPQDKPFDFRRIFGTHD DSDLTYNTPRVWIGQKILTPAVSNQPQSFELPFIQKPDHPISIEDAQRVLSDHYNGTPYD LTKAKNVNNSTFRPISIATTQESHLLQLKDQNMTQWLALGIASQSVYIPFYPQGTIVPNL FKYGKKEYSANSAYWVFKLAGTLVDRNWTKYSPYLINTQKEVRYTLKKIRYQYDQKLVNE TQQNKVIDIVNQANKEMAQVAIKAFKKLISQLITLQTADSPLSFKIDPNL >gi|308165521|gb|AEHO01000019.1| GENE 72 62212 - 63591 1055 459 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 12 459 56 506 506 410 49.0 1e-114 MSNFVFKTNSINNLESYYDAIVIGSGGAGLSAAIQAHELGLKVAILEKNNKLGGNTARAS SGMNAAETNIQYQQGIIDSMTKFYQETLQGGGQLNDPDMLHFFVEHAPLAIAWLKDHNIL LNELTITGGMTIKRTHRPASKEPIGNFLITNLLKEITKQHISVFNNAKVVELIHKDQDFA IKLENGQLISAKVVILATGGFGASKEIIKKYRPDLLSYKTTNQDGTTGDGLKLATKIGAQ LIQMNFIQVHPTAQTDNKHTYLIGEAVRGEGAILINQAAARFVNELDTRKIVANAITNLH EDGAWLILDQEIRNHVKALEFYDAVGLVKTGQTISELANAISISPQALIKTIQRWNQAIA QNNDVDYHRTTGLERPIATAPYFAIHVHPAIHYTMGGIHIDQHARVLDISGNIIKGFYAA GEVTGGLHGNNRIGGNSITETIVFGREAAIQAAKYILSK >gi|308165521|gb|AEHO01000019.1| GENE 73 63670 - 64527 946 285 aa, chain - ## HITS:1 COG:L128697 KEGG:ns NR:ns ## COG: L128697 COG3833 # Protein_GI_number: 15673667 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Lactococcus lactis # 1 285 1 285 285 335 64.0 6e-92 MKSYSAQRRLSLALRYLLLGFLAILWILPIVWIILASFSFNNTGFVSEFWPEKFTLDNYI GIFTNNQYPIVNWIINTLLVAIASAILSTFITISVAYVLSRLRFGFRKPFLQIALVLGMF PGFMSMIALYYILKALNMLNLVGLLLVYVGGSGLGFYIAKGFFDTMPRAIDEAAEIDGAT AWQVFIHIGLPLSKPMIVYTALTTFMAPWVDFIFSGIILSTSGNSKNYTIAYGLYNMLTS SKGASTSNFAQFIAGCVIIAIPITILFMIMQKFYVSGITAGSDKG >gi|308165521|gb|AEHO01000019.1| GENE 74 64546 - 65895 1009 449 aa, chain - ## HITS:1 COG:L128696 KEGG:ns NR:ns ## COG: L128696 COG1175 # Protein_GI_number: 15673666 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Lactococcus lactis # 1 449 1 452 452 492 60.0 1e-139 MFKKKHVAPEATFGETFAKGDIATKLSFFLMGVNALKHKQWVKGLSFLVTEIVYFVWLVL SGISALSMLSNLGKIKKKQVVFDKAQGIYLTKQPDNSVLILLFGILAILLTIGFIYLYYI NLKSNRNLYVLDRDHKHIPTNMEELASLLNTRLHSTLMFLPILGILLFTVLPTVFMISMA FTNYDSHHSIGFSWTAFSAFGSVLSGDLAGTFFPVLGWTLIWAVAATVTTFFFGVLLALL IESKGIKHKNFWRTIFVITFAVPQFVSLLMMAQFLDLQGPLNSLLKMVGIHAIHFIDDQA SPLVARITVIVVNMWIGVPVSMLTSTAIIQNLPQDQIEAAKIDGASAVQIFRYITFPQIL FVMSPALIQQFIGNINNFNVIFLLTGGKPFNNNYNGAGSTDLLVTWLYKLVFGQQQRYNA SAVLGILIFIISATVSLIAYRHTNAFKEG >gi|308165521|gb|AEHO01000019.1| GENE 75 65958 - 67172 1795 404 aa, chain - ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 1 402 1 407 410 316 47.0 6e-86 MSLLKKLGVSSVVALAAVSLAACGSKKDADKSAESSKPLTLWVDTQQVGYYKKIVKEFNK KYPKIKVRVTQSPNGSAQAKTDVGKDPAKAADVFEVPNDQLGQMAESGYINPLSPDAVKQ IKADNVPEAYKGVEWKGKVYAYPFAEQAQTLYYNKSKLSASDVKDWKTLTSKGVVATDFT NAYTMFPVFFTAGNKLFGANGEDPKGSTVASENGVAALKWFAEQKGNKGVMQTSNGLNQL KKDKAQAILDGPWNAANIKKILGKNFAVTVYPKINVAGKDAPMQAFLGIEGFAVNSHTSN AKNATLLAAFITNKAAQLVAHKEAGQIPVNKAAQASDEIKNDDVAKAVIAMAKKQSVLMP KLSQMAIFWDGASPLISGAYDGKIKADQFKAQLDKFAAKISKKN >gi|308165521|gb|AEHO01000019.1| GENE 76 67275 - 68378 1449 367 aa, chain - ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 367 1 377 377 510 64.0 1e-144 MVEVDLNHIYKKYEGNDRYSVNDFDLHIKDKEFIVFVGPSGCGKSTTLRMIAGLEDISEG TFEIDHQVMNDTAPKDRNIAMVFQNYALYPHMTIYDNMSFSLKLKHYAKEEIDKRVKHAA KILGLEDYLTKRPSELSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAKLRVTMRAEIAK LHQRLGTTTIYVTHDQTEAMTLADRVVVMSVGEVQQIGTPLEVYNKPVNMFVAGFIGSPQ MNFFNVHYKDGYISDGKGLNIEVPAGKASLLESKGYADKDLVFGIRPEDIHSEEAFLETW PHAVIDSEVVVSELLGATIQLYQKVNGTEFVANVNARDYHKPGDKVKMGFDVNKAHFFDK DTQKAIR >gi|308165521|gb|AEHO01000019.1| GENE 77 68398 - 69060 798 220 aa, chain - ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 2 219 1 218 226 191 46.0 7e-49 MLKGLIFDLDGVLTDSARYHLAAWSQLAEKLGIHLDAKAGDGLRGLSRMDSLNLILKFGH QEDKYTEAQKEEFAAEKNSLYVESIKAMTASDILPGIEQLLTDAKKQGLKLAIASASKNA PTILNQLNIMDKFDAIVDPSTLHKGKPDPEIYQKAQELLGLESDEVISFEDAAAGVASIK AAGQFAVGIGDEKIMAAADYIVSDTGKLRLEEIEAAFDQK >gi|308165521|gb|AEHO01000019.1| GENE 78 69045 - 71318 2329 757 aa, chain - ## HITS:1 COG:NMB0390 KEGG:ns NR:ns ## COG: NMB0390 COG1554 # Protein_GI_number: 15676304 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Neisseria meningitidis MC58 # 3 756 4 751 752 852 58.0 0 MKRIFEVDPWKVTSHIFNPEDKRLQESMTAIGNDYMGIRGNFEEGYSADGLQGTYLAGVW FPDKTRVGWWKNGYPEYFGKSLNAPSFINVEITVNGERVDLAKSKFSDFYLSLDMHQGLL TRSYVYEGKDVKVKFEFNRFLSNKIKEAALIDIKATVLEGSAKIKFNAKIDSNVVNEDSN YDEHFWQPLGEDGEGRTIQVITKPNPYEGVPQFTVLLKQGLKANGEKIEGKVTTTTGVLS ETVEVELNENDTYELEKDVVVVTSRDVEPAEQAKKATDLLDAVQSESFADNLADHTAIWE KRWEQSDIVIAGDEAAQQGIRFNILQLFMTYYGEDRRLNVGPKGFTGEKYGGATYWDTEA YIVPMYLAVTKPEVTKSLLEYRHEQLPGAYHNAKQQGLKGALFPMVTFNGIECHNEWEIT FEEIHRNADIPFAIYQYTNYTGDDSYVKDEGMDVLVGTARFWADRVHFSKRKGKYMIHGV TGPNEYENNVNNNWFTNTMARWLIGYTLERLPKATAEAQKRVAVTDEEKAKWQDIVDNMY LPEDKELGIFVQHDTFLDKDLRPVSEIEDQRPINQNWSWDKILRSPFIKQADVLQGIYFL NDHYTMEQKEKNFDFYEPMTVHESSLSPCIHSILAAELGKKEKAVELYERTARLDLDNYN NDTVDGLHITSMSGSWLAIVQGFAGMRYDADHLKFNPFVPDKWNHYSFKLNYRGRLIEVY ADHKEIKVSLLKGADLEIIVKGDKVQLKEGETQCLKA >gi|308165521|gb|AEHO01000019.1| GENE 79 71302 - 71451 69 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501207|ref|ZP_05744109.1| ## NR: gi|259501207|ref|ZP_05744109.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_1266 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0019 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0526 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0018 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9217_0018 [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_1266 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0019 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0526 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9217_0018 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9219_0018 [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 49 1 49 49 85 100.0 1e-15 MALLLGIINFDNGNIKDGIVKRFQKHNNRLIEIKPVNSWRRRQINETYF >gi|308165521|gb|AEHO01000019.1| GENE 80 71426 - 73174 1452 582 aa, chain - ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 579 1 582 584 567 50.0 1e-161 MQLSAISHRPDSEDAFLYDKDHLRIRLHTAKNDIAKVTVFYNDPYMFMPDKEGKYIFHYH IKKMHLISKGQVHDHWGVTLTAQYHRIQYLFEIQDTSGRKIFLTDRGFRTACKEGLNKTQ NYYRLPYFHEIDMVKTPEWVKGTVWYQIFPERFSNGNKSNDRPNVKDWDPQTHPGREDFY GGDLQGVINHLDDLRELGVNGLYFCPIFKASSNHKYDTIDYKEVDPDFGDKGLFRQLVQE AHKRGMKVMLDAVFNHIGVNSPQWHDVIKNGSKSKYADWFHINYFPVEPYHDPTKGQGEP PYDTFAWEPHMPKWNTANVEVQNYLLDIASYWIKQFDIDAWRLDVAPEVDHNFWRLFRSK VDSLKKDFYIVGEIWHSAQSWLDGDQFSSTMNYPFTQQIEDHFLLGTKTSHQMVELLSDQ LMLYRAQTNQVMLNTLDSHDTPRILTMANGDKKLVYQTIAFTFMQTGSPCIYYGTEMGMT GGPDPDCRKPMDWSHKGDEFWQKIAGLVKFRLQNARILGKGNTRMRVTEDGLIRIKRTES GQSILGYFNTTDKPVSCKMKAVLSQNFANDILEPHGFVIGYN >gi|308165521|gb|AEHO01000019.1| GENE 81 73189 - 74850 1535 553 aa, chain - ## HITS:1 COG:BH0872 KEGG:ns NR:ns ## COG: BH0872 COG0366 # Protein_GI_number: 15613435 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 4 520 5 519 559 361 36.0 2e-99 MANWYDRAIIYQIYPKSFQDSNGDGIGDLNGIRQRIPYLKSLGINAVWLNPVFVSPQVDN GYDVSNYYAIDPSMGTMEDMENLLSELHDAGIRVIMDFVLNHTSYQHPWFQDAIHNKDSI YRDYYIFAKGKDGKEPNNWGSFFGGSVWEKDPAGTDEYYFHLFDKKMPDLNWKNPEVRHA MLDVAEFWLKKGIDGLRIDAFIHIGKADLRQNYPTDSDDDQPIVAEPFFANLSQVQKWLR PFCKQIKADYPDTLLLGEAASANVNLAVDYTLPRNELMDTVITFRYFTEDLTKLDESFST RYQPRDLDIPAFKQNQVVWQQTLSNVSLPTLYWNNHDMSRVATRFAKDEQQVKGLAMLMY LQRGIPVIYYGEELGLKNLHFDTAEPFNDITVDEFLASAIKAGKTKEQALEMVSKMHKLA ARNVMPWDDSDNSGFTTGEPWNVGVPANADNVAGEENDNNSVLNFYRQLIDLKKTDLFTN GTYYLFDTNKYTYVYERDLEDEVGIVAVSLSSKKEMIELPIGNYDIKLKTGTCELVNNQL TLAPGSGVVLIKK >gi|308165521|gb|AEHO01000019.1| GENE 82 75015 - 75968 797 317 aa, chain - ## HITS:1 COG:BS_yvdE KEGG:ns NR:ns ## COG: BS_yvdE COG1609 # Protein_GI_number: 16080516 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 315 1 315 316 321 50.0 9e-88 MVTLSDVAKEANVSKMTVSRVINHPEQVTKELRSLVEKAMKTLHYSPNSAARALAKNRTN VVKFIILENIDTTEPYYMNLLFGITQGLNRHQYALQLLTSVDEITKGNADGYIITGARSS DSEWLDKLDKPFVLFGENRYGYDYVDTDNKVGEQIATQYALNKNYQSIIFIGINEKEAFE YSREAGYINTLQSHNKVPKIFRLPNHSHSAQHFIDEHWKEFAHNTCFICASDRLATGVVR AIIAKGGEIPKDFGVIGFDGIFLDQVSHPKLTTVKQPIIKLGELLSDMLLQKISQSGAQQ GELLIEPTLIKRDTTRN >gi|308165521|gb|AEHO01000019.1| GENE 83 76062 - 76838 826 258 aa, chain - ## HITS:1 COG:lin2049 KEGG:ns NR:ns ## COG: lin2049 COG2365 # Protein_GI_number: 16801115 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 1 186 73 248 326 93 36.0 4e-19 MNDRLIILDGAVNFRDLGGYVAANGRSVCWQKIYRSDRLDNLTMQDMEILAQKHIVTDCD LRTSYEQSYWQDRLWDGVAHYDCHIYNEEDITYENQITTETVNNLINSLPVPQGIVGRRY QKILLDKTGQMALKRVFQEILSLDENDALVFHCTAGKDRTGLVAAVILLGLGVKEEDIIA DYLLSNELYLFSIKHTLPTDDDLQNIIERMNLNGVDALSIQTIIQTINQGFGGFDNYFLK VLNFSKADLSEFRNKLTV >gi|308165521|gb|AEHO01000019.1| GENE 84 77006 - 77677 669 223 aa, chain + ## HITS:1 COG:SPy1034 KEGG:ns NR:ns ## COG: SPy1034 COG3442 # Protein_GI_number: 15675031 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 6 208 18 222 263 174 47.0 1e-43 MNKSSIKIAYLYEDLMNTYGDSGDVKIIKFLLKKAGYETEVDNVSLGTNFDASKYDFVFF GGGQDLEQTIVAKDLPRHKQTLQKYIESGNPMLCICGGYQLLGSYYKTNAGITIKGLDIV PIHTVFKADKRMIGDTHYITQWGEVRAFENHSGQTYFDNDKLKPLGKMIEGYGNNPQDGV EGMRYKNLIGSYSHGPLLKNENIANALVDKIITRYHRRTEHAL >gi|308165521|gb|AEHO01000019.1| GENE 85 77667 - 79052 1167 461 aa, chain + ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 9 457 11 460 463 426 50.0 1e-119 MPYNLLRKENLSRYINTDKHFVKTIGAFELLTLGIGSVIGTGIFILPGTVAATKAGPAVT ISFIIAAFVCALCSMCYAELSASIPIAGSAYSYGNILYGEFIGWILGWALILEYMLSVAA VSTGWSSYCNSLLSSFNWQLPHFLSGPFNPAQGTYVNLLAILSVIFIAALLSKGMKSSLK FNNIAVLLKIGIICVFIIVGLFYIKPKNYTPYFPFHFSGIFKGATTVFFAFLGFDVISAS AAEVKKPEKYMPIGIIGTLIIAVLLYIGVSIVLTGMISYNKLDVANPVAFALKSVNQGWI ADCLSIGAIIGMSTMMLSMIYSSSRLIYSIGRDGLLPNFLGKINTVGLPKNALIVVTIII ALMGGLFSLDELTSLVSIGTLLAFTFVSFGVILIRRRTDIPSGTFKVPLYPFIPLLSGIC CIGMMTFLSKRTFIFASIWFSIGILIYLLYGYKHSKINQIK >gi|308165521|gb|AEHO01000019.1| GENE 86 79008 - 79160 58 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFEKSTVRIVVFLFFKLTKREVTYALVISLLKKFVQLFDLINFTVLVTIQ >gi|308165521|gb|AEHO01000019.1| GENE 87 79312 - 80190 841 292 aa, chain + ## HITS:1 COG:no KEGG:Ldb1900 NR:ns ## KEGG: Ldb1900 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 36 244 72 280 281 223 57.0 8e-57 MLSAGHNLTLTHKANATEISATKDIRTQTLGIKNYKLESLDFISGNQAIIELNNNHANLN PNDWQEHKIVYKRIDQFNRATGAKTAFLSKSNIDSLSKGRVKQYINPSGWHPNLPDQKIY NRGHFIAYSLSKGMDKMGKYSPNLQSGDQNNRKNLFTQTDFSNKALQTIFEDKVRTALMQ DKKVIYQAKPIFRGSELMARGVHLQAISTDKSLNFNVYIFNVQPGYKFDYQTGRVAADKD MYVSFNNQKFNNFDYYHAKVKQLNDQTFIHKISQSKIYIFFKEKWNALLQYN >gi|308165521|gb|AEHO01000019.1| GENE 88 80344 - 83058 2493 904 aa, chain - ## HITS:1 COG:lin2460 KEGG:ns NR:ns ## COG: lin2460 COG1511 # Protein_GI_number: 16801522 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 12 887 14 898 927 404 31.0 1e-112 MKKIKQKLSQHNLVFIIMFAVAILAPVLYSLSFIKSVWDPYAGAKNLPIAVVNNDQAVNY NNKKLAVGDKIVSQLKHNKQMKWLFVTEEEAKKGLQNRKFYTVVTIPNDFSKNATTVLTS HPQKMKLYYKTNDSLNYLGSTMSDMALIRLNGKVRSSVTKAYANAMFDQLRILGKGMHKA ANGAKQISTGMISLQDGSKKYVAGVSKISNGMQILRVSVQPLATGSKKLVEGSSKLYTGI NKYTNGVSKLYLGSEKLIDATPILTQGINEFNTGLFAYTSGVGRLSSGLSKLSANSYRLR AGGRSLLTASDNFDLLNVGSQKVNAGVSAFNSKLSDSNLLGTLNGALSLQGQVFQLESQL ATVQETLKVLKSLDLLSIVKSMADIKQYAENLSQAKNIDQAINYSDQNATKADKIAQLVN SESQINESTKQKILGLVKDIKTNAQAGNASLEAYVGESVVPLLLSLEGMQSKLSPAQLQG LSSQIANIESALVGAKKLLSETKGLLSKVSDNKDMLNNMPDKLKKLSAATSQIAAGTQQL VDSKSKIKQLVSGIDEYTDGVDMAMSGAATLDANSAKLLSGFDKLKLGFSQYAGGIVQIN GGLKLLDLNSKTLLSGSNQLNVALIQLNEKVPALLSGIDRLANGSSQLNSKSSILLQGIN KLRQGSGTLSDKLSQGADKLNSTQAADANSDMFSDPAELKHDTVSVVPNYGHALAPFIMA TALFIGVLILLVEFPANRRMTEITSYRSLILREFKLAIIACLGMVLVQNIILIASGLKVF NVVELFTICIAYTLAMLGIMQLLTFMFGRWGLLPGLLLFVLQIGGAGGMFPIEVTNSFFQ NIHQFLPMSYAIAGLRQAITSGLGTGYFMSNLMVLILLAIVAYVGLVIAIVYKFTNTATE TVTD >gi|308165521|gb|AEHO01000019.1| GENE 89 83242 - 83826 479 194 aa, chain - ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 1 181 117 298 306 108 35.0 7e-24 MGPFFIMFYMVVFEHQFLRRLDIVAALVAFMGIIFIATHGNFSKISLSPEVLFWGFLSAL GVATNTLIPRPLLKRMDSVTLIAWSMIATGLMMLIAYPSQILIPKDSRVIILLVVIIILG TILPFYCMLNSLRYIKPSTASILDAFEPISATLGSVFVFNLTLKPIDWLGTILVILAVIA ICYQPKSKIKSIQK >gi|308165521|gb|AEHO01000019.1| GENE 90 83855 - 84154 167 99 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1785 NR:ns ## KEGG: LGAS_1785 # Name: not_defined # Def: DMT family permease # Organism: L.gasseri # Pathway: not_defined # 4 98 3 97 297 100 51.0 2e-20 MKQQKKLWIFLVIISCNLWGISGLCAKRVFDLSTQVSPITITQIRMLISGLFLLLLAQLT GKKPIKILYSRKNIIDIILYGLFGLIPIQLFYFIVVQKI >gi|308165521|gb|AEHO01000019.1| GENE 91 84612 - 85622 1226 336 aa, chain + ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 9 336 3 327 327 396 60.0 1e-110 MPLIIPKDYVPKLNIRDTEAAISIIRETFQDKLSTELTLQRMSAPMFVEKSTGLNDNLNG IERPVSFDIKNIPDDQIEVVHSLAKWKRFALKRYNFPMHEGLYTNMNAIRRDEDLDNFHS IYVDQWDWEKIIKKEERTEETLKNTVRKIFAAIKQTEQYVRKIYPGSIYRLPDQISFVTT QELENRWPELSPQEREDKIAEEQKAVFLMKIGDKLEKSGKPHDGRAPDYDDWQLNGDIIF WYEPLHCKLEVSSMGIRVSETSLKEQLVKANAQDREQLPFHKMLLNGDLPYTIGGGIGQS RLCMLLLAKVHIGEVQASIWPKEMADQCEKNNIHLL >gi|308165521|gb|AEHO01000019.1| GENE 92 85985 - 87598 738 537 aa, chain - ## HITS:1 COG:HP1082 KEGG:ns NR:ns ## COG: HP1082 COG1132 # Protein_GI_number: 15645696 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Helicobacter pylori 26695 # 116 524 119 530 551 79 23.0 2e-14 MRAVLKELNSKYKFEYFLFLGMNIINTCIETSNIFLEGMLINSLVYKADRISFIHNVVII IALNVVRLFLSFFINKIQILNYRKINIDVNDTIIKKLYSKDTLEVLKLDPIQTADRITED TNEILNFLFQTVNQIISIIISSIIIFIYIIKAKSNFFLFIMILLPAYIILYLILKPKIFK INLELRQVYNEYFSGFAEWLNRYVEIKGNKREEREYKRWKKTQASLLNITRRNFFLNLGM STGEIVLQLIFQLILFINGGLAVISGSMTIGSFSVLFQYFNQLLGQVDALFSILFDFESF RVAYMRIDQLMSIMNEVDGEIVITKVENIQVHNFNISLDAQKTLFSKKLTCSFNNSGLYV VRGRNGIGKSTFLRTITGLYTPAKKGTILINNIDIDLINKKKLREDNISCLFQDTILPNC VVREYLDMYVNESNENCISGYQYFPKVFSSSQFNIKKVLDKKMTELSTGEIQLVKLYATI LKNEAHCFLLDEPLANIYPELQSDVLSLLNEIAQNNLVIIISHDLGIEEKTKNIRIR >gi|308165521|gb|AEHO01000019.1| GENE 93 87898 - 89280 1100 460 aa, chain - ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 457 1 453 459 473 56.0 1e-133 MQNNSKKIQLKRSMTAGQMEMISLGGAIGVGLFMGSTSTIKWTGPSVLLAYMLVGLILYI VMRALGEMLYVNATTGSFADYATHYISPLAGYLAEWSNIFEYIMVGISEVVAVTEYLKYW WPKTPTWIAGIIVIVFLVLANLASAKAYGTLEFWFSMIKVITIVLMIVVGLAVILLGLGN KGVPIGFSNLWSHGGFFAHGIKGFFFSLAIIVGSYEGIELIGISAGEVMDPHKAVVKSVK SVLWRILIFYVGAIFIIVCIYPWNELKAIGSPFVETFTKVGIPFAAGFINFVILTAALSG ANSGIYSSSRMLFRLAHEGHAPKFFGKVSKRVVPNKAILGISAGILIGFILNLIFSTISK SASSLFVLIYSSSVLPGMVPWFVILIAELKFRKENPKQMAQHTFKLPLYPYSSYFAFSML FLIIIFMFINPETRLSVIVGAAVLLFATILYFIRKKKIVK >gi|308165521|gb|AEHO01000019.1| GENE 94 89508 - 89867 223 119 aa, chain - ## HITS:1 COG:lin0146 KEGG:ns NR:ns ## COG: lin0146 COG4687 # Protein_GI_number: 16799223 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 114 1 114 129 114 48.0 5e-26 MVQSINTKSEYHVDATWFRGMSVYGQVLIGDVGFEFYSSKNVNDFVQIPWTEVKLVIADV YFKGKYIPRFKIQTRNSGDFIFATRHPKDTLRAIRTHISDEKMRKSRTFWQIIKNFLKR >gi|308165521|gb|AEHO01000019.1| GENE 95 89869 - 90798 892 309 aa, chain - ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 8 309 4 303 303 433 73.0 1e-121 MSETAKNKIILSKKDRWNVCWRSTFLQGSWNYERMQNGGWVYSLIPALRKLYPNKEDLSA ALKRHLEFFNTHPYLAAPVIGVTLALEEEKANGAKVENAALQGVKVGMMGPLAGVGDPVF WFTVRPILGAIGASLACAGNILGPILFFVVWNVIRIGFLWNTQEMGYKAGTKITEDASGG LLQKITRGASMMGMFILGALIERWVNISFKPIVSSVKLAKGAYIDWNHISSGAKGIHQVL TQWNMGKGLSLEPIKVTTLQGNLDALIPGLAGLLLTFLCMWLLKKKVSPIAIILGIFVVG VLGHVVGLL >gi|308165521|gb|AEHO01000019.1| GENE 96 90823 - 91617 1117 264 aa, chain - ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 264 1 268 268 263 69.0 2e-70 MNAIQIILVVVVAFLAGMEGILDQFQFHQPLVACTLIGLVTGNLELGLLLGGSLQMIALG WANIGAAVAPDAALAAVASTIILIQGGQGSKGIGAAIGIAIPLAIAGLFLTMIVRTISVA IVHIMDKEAEKANWRAIDVWQCVAIALQGLRIAIPAALLLFIPASVVKAGLAAMPAWLND GMSIAGGMVVAVGYAMVINMMASREVWPFFVIGFCVAALQGLTLIALGGIGVSLSIMYLA LEGSGSKSSNNGSGDPLGDILDNY >gi|308165521|gb|AEHO01000019.1| GENE 97 91645 - 92634 1272 329 aa, chain - ## HITS:1 COG:CAP0066_2 KEGG:ns NR:ns ## COG: CAP0066_2 COG3444 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 163 329 1 168 168 201 58.0 1e-51 MVGIVLASHGGFADGIFQSAEMIFGKQENLAHVILKPDEGPDDIRKKMEDAIASFDDSEQ VLFIVDLWGGTPFNQANNLVKEHEDTWAIVSGMNLPMVVEALGQRLASNNAHDIAKAIVK PGRDGIKTKPESLMPVEKVESNVSAKHQAAIPEGTVIGDGHIKYLLARIDSRLLHGQVAT SWTKSLAPNRIIVVSDGVSKDKIRKTMIREAAPSGVPANVVPIDKMLEVTKDTRFGGTKA LILFENPEDALKAIKGGMDIKTLNIGSMAYSAGKVNVNTVLAMDQKDVDAYRELEKLGVS FDVRKVPADSKQDMNELLNKAQKLINEQK Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:53:43 2011 Seq name: gi|308165397|gb|AEHO01000020.1| Lactobacillus iners LactinV 09V1-c contig00151, whole genome shotgun sequence Length of sequence - 113495 bp Number of predicted genes - 125, with homology - 125 Number of transcription units - 50, operones - 29 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 23/0.000 - CDS 1 - 220 179 ## COG2801 Transposase and inactivated derivatives 2 1 Op 2 . - CDS 238 - 807 700 ## COG2963 Transposase and inactivated derivatives 3 1 Op 3 . - CDS 882 - 1604 562 ## gi|309803151|ref|ZP_07697248.1| putative membrane protein 4 1 Op 4 . - CDS 1622 - 1831 160 ## Lbuc_2280 ABC transporter-like protein 5 1 Op 5 8/0.000 - CDS 1900 - 2205 128 ## COG1131 ABC-type multidrug transport system, ATPase component - Prom 2225 - 2284 3.1 6 1 Op 6 . - CDS 2302 - 2676 468 ## COG1725 Predicted transcriptional regulators - Prom 2881 - 2940 8.8 - Term 2885 - 2930 3.8 7 2 Op 1 . - CDS 2987 - 4231 1221 ## COG2195 Di- and tripeptidases 8 2 Op 2 9/0.000 - CDS 4251 - 5048 749 ## COG0327 Uncharacterized conserved protein 9 2 Op 3 5/0.000 - CDS 5035 - 5718 624 ## COG2384 Predicted SAM-dependent methyltransferase 10 2 Op 4 . - CDS 5779 - 6927 1172 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 11 2 Op 5 . - CDS 6939 - 7226 171 ## LJ1318 DNA primase 12 2 Op 6 . - CDS 7254 - 8741 1138 ## COG0358 DNA primase (bacterial type) 13 2 Op 7 19/0.000 - CDS 8760 - 10829 2144 ## COG0751 Glycyl-tRNA synthetase, beta subunit 14 2 Op 8 3/0.000 - CDS 10831 - 11736 994 ## COG0752 Glycyl-tRNA synthetase, alpha subunit - Prom 11756 - 11815 4.9 - Term 11759 - 11794 4.0 15 2 Op 9 16/0.000 - CDS 11990 - 12655 447 ## COG1381 Recombinational DNA repair protein (RecF pathway) - Prom 12678 - 12737 2.8 16 2 Op 10 2/0.111 - CDS 12739 - 13641 889 ## COG1159 GTPase 17 2 Op 11 17/0.000 - CDS 13657 - 14184 683 ## COG0319 Predicted metal-dependent hydrolase 18 2 Op 12 1/0.333 - CDS 14181 - 15143 1052 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 19 2 Op 13 . - CDS 15163 - 15606 515 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 - Prom 15634 - 15693 9.5 - Term 15654 - 15695 5.5 20 3 Tu 1 . - CDS 15703 - 15879 292 ## PROTEIN SUPPORTED gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 - Prom 15929 - 15988 13.9 + Prom 15935 - 15994 10.4 21 4 Op 1 . + CDS 16081 - 16236 184 ## LJ1326 hypothetical protein 22 4 Op 2 . + CDS 16314 - 16913 703 ## COG1806 Uncharacterized protein conserved in bacteria + Term 16935 - 16970 1.0 - Term 16917 - 16963 11.5 23 5 Tu 1 . - CDS 16965 - 17843 641 ## COG1284 Uncharacterized conserved protein - Prom 17889 - 17948 7.9 24 6 Op 1 . - CDS 17969 - 18541 610 ## COG0431 Predicted flavoprotein - Prom 18561 - 18620 3.2 25 6 Op 2 13/0.000 - CDS 18622 - 20460 2152 ## COG0173 Aspartyl-tRNA synthetase 26 6 Op 3 . - CDS 20463 - 21749 1319 ## COG0124 Histidyl-tRNA synthetase - Prom 21935 - 21994 5.8 - Term 21756 - 21793 2.1 27 7 Op 1 7/0.000 - CDS 21996 - 22433 540 ## COG1490 D-Tyr-tRNAtyr deacylase 28 7 Op 2 1/0.333 - CDS 22433 - 24289 1543 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 29 7 Op 3 . - CDS 24352 - 24684 502 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 30 7 Op 4 . - CDS 24694 - 25074 257 ## LGAS_0856 hypothetical protein 31 7 Op 5 . - CDS 25111 - 26043 808 ## PROTEIN SUPPORTED gi|227890128|ref|ZP_04007933.1| ribosomal protein L11 methyltransferase - Prom 26076 - 26135 13.1 + Prom 26021 - 26080 8.2 32 8 Tu 1 . + CDS 26105 - 26611 418 ## COG2606 Uncharacterized conserved protein + Term 26615 - 26655 5.5 33 9 Tu 1 . - CDS 26666 - 28045 1172 ## COG3610 Uncharacterized conserved protein - Prom 28103 - 28162 8.6 - Term 28121 - 28167 11.6 34 10 Op 1 32/0.000 - CDS 28169 - 28870 772 ## COG2011 ABC-type metal ion transport system, permease component 35 10 Op 2 . - CDS 28863 - 29912 1109 ## COG1135 ABC-type metal ion transport system, ATPase component - Term 30061 - 30106 0.7 36 11 Op 1 . - CDS 30293 - 31885 1522 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 37 11 Op 2 . - CDS 31933 - 33492 1334 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases - Prom 33515 - 33574 1.6 38 11 Op 3 . - CDS 33576 - 33803 217 ## LA2_02565 thermostable pullulanase - Prom 33853 - 33912 7.9 - Term 33872 - 33924 12.2 39 12 Op 1 . - CDS 33940 - 35226 1602 ## COG0148 Enolase - Prom 35264 - 35323 5.5 40 12 Op 2 . - CDS 35380 - 35934 330 ## Ldb1292 putative membrane-associated phosphatase - Prom 36124 - 36183 8.8 - TRNA 36028 - 36114 69.6 # Ser CGA 0 0 + Prom 36145 - 36204 6.8 41 13 Tu 1 . + CDS 36237 - 38495 2082 ## COG0474 Cation transport ATPase - Term 38316 - 38381 1.5 42 14 Tu 1 . - CDS 38501 - 40426 1653 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases - Prom 40466 - 40525 13.3 - Term 40452 - 40514 1.0 43 15 Op 1 12/0.000 - CDS 40556 - 42073 789 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 44 15 Op 2 . - CDS 42066 - 43019 683 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 45 15 Op 3 6/0.000 - CDS 43059 - 44207 898 ## COG0477 Permeases of the major facilitator superfamily - Prom 44266 - 44325 8.0 - Term 44274 - 44319 8.2 46 16 Op 1 . - CDS 44337 - 45674 1164 ## COG0174 Glutamine synthetase - Prom 45713 - 45772 4.6 47 16 Op 2 . - CDS 45779 - 46714 853 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase - Prom 46747 - 46806 9.2 + Prom 46702 - 46761 11.3 48 17 Tu 1 . + CDS 46789 - 46968 264 ## LGAS_1381 hypothetical protein 49 18 Op 1 1/0.333 - CDS 47023 - 47424 417 ## COG0607 Rhodanese-related sulfurtransferase 50 18 Op 2 3/0.000 - CDS 47459 - 47677 225 ## COG4483 Uncharacterized protein conserved in bacteria 51 18 Op 3 4/0.000 - CDS 47677 - 48375 433 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 52 18 Op 4 . - CDS 48389 - 48940 428 ## COG0212 5-formyltetrahydrofolate cyclo-ligase - Term 48957 - 48993 2.2 53 18 Op 5 . - CDS 48997 - 49158 268 ## PROTEIN SUPPORTED gi|116095596|gb|ABJ60748.1| Ribosomal protein L33 - Prom 49179 - 49238 9.9 - TRNA 49320 - 49393 79.7 # Arg TCT 0 0 - Term 49280 - 49313 2.2 54 19 Tu 1 . - CDS 49471 - 52005 3074 ## COG0308 Aminopeptidase N - Prom 52038 - 52097 5.7 + Prom 52511 - 52570 4.0 55 20 Tu 1 . + CDS 52614 - 54545 1766 ## LGAS_0712 x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) + Term 54570 - 54616 9.1 - Term 54556 - 54602 6.1 56 21 Op 1 . - CDS 54618 - 55898 1060 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 57 21 Op 2 . - CDS 55912 - 56562 665 ## COG1285 Uncharacterized membrane protein 58 21 Op 3 13/0.000 - CDS 56617 - 57444 768 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 59 21 Op 4 13/0.000 - CDS 57441 - 58265 981 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 60 21 Op 5 . - CDS 58281 - 58547 264 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 61 21 Op 6 9/0.000 - CDS 58601 - 58771 224 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 62 21 Op 7 3/0.000 - CDS 58788 - 59195 492 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 59233 - 59292 7.6 - Term 59270 - 59310 9.4 63 22 Op 1 . - CDS 59328 - 61646 1542 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain 64 22 Op 2 . - CDS 61654 - 61911 178 ## FI9785_531 hypothetical protein 65 22 Op 3 1/0.333 - CDS 61918 - 64020 1769 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Term 64030 - 64071 9.1 66 23 Op 1 3/0.000 - CDS 64075 - 64560 760 ## COG0782 Transcription elongation factor 67 23 Op 2 . - CDS 64633 - 65628 944 ## COG1559 Predicted periplasmic solute-binding protein - Prom 65660 - 65719 4.5 68 24 Op 1 40/0.000 - CDS 65757 - 68171 2536 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 69 24 Op 2 1/0.333 - CDS 68171 - 69220 1031 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Prom 69421 - 69480 9.4 - Term 69232 - 69275 7.3 70 25 Op 1 . - CDS 69513 - 69860 341 ## COG1733 Predicted transcriptional regulators 71 25 Op 2 . - CDS 69933 - 70694 219 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 - Prom 70824 - 70883 6.5 72 26 Op 1 . + CDS 70998 - 71159 66 ## LJ1629 hypothetical protein 73 26 Op 2 . + CDS 71201 - 71800 443 ## COG0706 Preprotein translocase subunit YidC 74 27 Op 1 40/0.000 - CDS 71885 - 73426 1253 ## COG0642 Signal transduction histidine kinase 75 27 Op 2 1/0.333 - CDS 73404 - 74129 869 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 74167 - 74226 2.5 76 28 Op 1 . - CDS 74245 - 74772 532 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 77 28 Op 2 . - CDS 74773 - 75933 1131 ## COG1323 Predicted nucleotidyltransferase - Prom 76015 - 76074 3.0 - Term 76013 - 76060 1.3 78 29 Op 1 . - CDS 76080 - 76286 228 ## LGAS_1401 iojap family protein 79 29 Op 2 1/0.333 - CDS 76298 - 77527 1119 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 80 29 Op 3 . - CDS 77527 - 77943 486 ## COG1161 Predicted GTPases - Prom 78132 - 78191 5.4 81 30 Op 1 6/0.000 - CDS 78263 - 78637 331 ## COG1161 Predicted GTPases 82 30 Op 2 . - CDS 78642 - 79154 429 ## COG2179 Predicted hydrolase of the HAD superfamily - Prom 79174 - 79233 14.7 - Term 79198 - 79254 7.0 83 31 Op 1 19/0.000 - CDS 79273 - 81165 2149 ## COG1299 Phosphotransferase system, fructose-specific IIC component 84 31 Op 2 10/0.000 - CDS 81193 - 82107 1057 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 85 31 Op 3 . - CDS 82107 - 82598 431 ## COG1349 Transcriptional regulators of sugar metabolism 86 31 Op 4 . - CDS 82589 - 82858 248 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 82914 - 82973 6.9 - Term 82958 - 82992 4.5 87 32 Op 1 46/0.000 - CDS 83002 - 83358 549 ## PROTEIN SUPPORTED gi|227526538|ref|ZP_03956587.1| ribosomal protein L20 88 32 Op 2 36/0.000 - CDS 83395 - 83595 313 ## PROTEIN SUPPORTED gi|42519517|ref|NP_965447.1| 50S ribosomal protein L35 89 32 Op 3 16/0.000 - CDS 83613 - 84128 394 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 - Prom 84173 - 84232 3.8 - Term 84171 - 84212 5.0 90 32 Op 4 . - CDS 84321 - 85703 1333 ## COG0441 Threonyl-tRNA synthetase 91 32 Op 5 2/0.111 - CDS 85714 - 86253 560 ## COG0441 Threonyl-tRNA synthetase - Prom 86372 - 86431 9.3 - Term 86262 - 86299 5.4 92 33 Tu 1 . - CDS 86522 - 87253 539 ## COG1484 DNA replication protein - Prom 87281 - 87340 4.7 93 34 Op 1 . - CDS 87437 - 87766 157 ## FI9785_1441 chromosome replication initiation / membrane attachment protein 94 34 Op 2 6/0.000 - CDS 87796 - 88782 1135 ## COG3611 Replication initiation/membrane attachment protein 95 34 Op 3 1/0.333 - CDS 88786 - 89253 561 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 96 34 Op 4 4/0.000 - CDS 89328 - 89849 429 ## COG0237 Dephospho-CoA kinase 97 34 Op 5 4/0.000 - CDS 89846 - 90676 634 ## COG0266 Formamidopyrimidine-DNA glycosylase 98 34 Op 6 . - CDS 90689 - 91981 1010 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 99 34 Op 7 . - CDS 91999 - 93360 1128 ## COG0258 5'-3' exonuclease (including N-terminal domain of PolI) 100 34 Op 8 . - CDS 93390 - 94439 494 ## gi|329920110|ref|ZP_08276941.1| conserved domain protein 101 34 Op 9 . - CDS 94420 - 95058 245 ## gi|315653654|ref|ZP_07906574.1| conserved hypothetical protein - Prom 95098 - 95157 4.8 102 35 Tu 1 . - CDS 95205 - 96377 896 ## SPCG_1088 hypothetical protein - Prom 96409 - 96468 5.1 - Term 96421 - 96466 6.0 103 36 Tu 1 . - CDS 96483 - 97142 729 ## COG4108 Peptide chain release factor RF-3 - Prom 97175 - 97234 4.2 104 37 Op 1 . - CDS 97268 - 98053 895 ## COG4108 Peptide chain release factor RF-3 105 37 Op 2 . - CDS 98053 - 98928 959 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 98978 - 99037 9.3 + Prom 98710 - 98769 7.2 106 38 Tu 1 . + CDS 99009 - 99482 479 ## LGAS_1367 hypothetical protein + Term 99645 - 99686 -0.7 107 39 Op 1 . - CDS 99486 - 99977 587 ## LGAS_1368 hypothetical protein 108 39 Op 2 . - CDS 99997 - 100455 340 ## COG2137 Uncharacterized protein conserved in bacteria 109 39 Op 3 . - CDS 100503 - 100811 304 ## COG2137 Uncharacterized protein conserved in bacteria - Prom 100886 - 100945 8.5 + Prom 101264 - 101323 6.0 110 40 Tu 1 . + CDS 101371 - 102291 893 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Term 102311 - 102346 4.1 - Term 102387 - 102436 -0.8 111 41 Tu 1 . - CDS 102537 - 103490 746 ## COG1073 Hydrolases of the alpha/beta superfamily 112 42 Tu 1 . + CDS 103577 - 103870 288 ## gi|302191194|ref|ZP_07267448.1| hypothetical protein LineA_04222 + Term 103874 - 103916 5.1 - Term 103862 - 103904 5.5 113 43 Op 1 . - CDS 103911 - 104798 1022 ## COG1210 UDP-glucose pyrophosphorylase 114 43 Op 2 2/0.111 - CDS 104838 - 105758 670 ## COG1295 Predicted membrane protein 115 43 Op 3 . - CDS 105762 - 106547 1126 ## COG0024 Methionine aminopeptidase - Prom 106625 - 106684 12.7 + Prom 106562 - 106621 10.7 116 44 Tu 1 . + CDS 106716 - 107162 566 ## COG0716 Flavodoxins + Term 107168 - 107212 4.1 - Term 107148 - 107207 10.5 117 45 Tu 1 . - CDS 107224 - 108366 1097 ## COG0381 UDP-N-acetylglucosamine 2-epimerase - Prom 108419 - 108478 8.5 + Prom 108394 - 108453 7.9 118 46 Tu 1 . + CDS 108479 - 108658 111 ## gi|259500499|ref|ZP_05743401.1| conserved hypothetical protein + Term 108784 - 108840 2.1 + TRNA 108710 - 108782 61.9 # Arg CCT 0 0 119 47 Tu 1 . - CDS 108801 - 109541 616 ## COG0513 Superfamily II DNA and RNA helicases - Prom 109561 - 109620 5.8 120 48 Op 1 . - CDS 109670 - 110035 521 ## COG0513 Superfamily II DNA and RNA helicases 121 48 Op 2 . - CDS 110091 - 110657 667 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase - Prom 110689 - 110748 6.5 122 49 Op 1 . - CDS 110750 - 112093 1231 ## COG1253 Hemolysins and related proteins containing CBS domains 123 49 Op 2 . - CDS 112139 - 112837 686 ## LGAS_0564 hypothetical protein 124 49 Op 3 . - CDS 112841 - 113065 269 ## gi|259500494|ref|ZP_05743396.1| conserved hypothetical protein - Prom 113135 - 113194 7.6 - Term 113135 - 113196 11.7 125 50 Tu 1 . - CDS 113205 - 113420 319 ## gi|315653674|ref|ZP_07906594.1| conserved hypothetical protein Predicted protein(s) >gi|308165397|gb|AEHO01000020.1| GENE 1 1 - 220 179 73 aa, chain - ## HITS:1 COG:SPy1336 KEGG:ns NR:ns ## COG: SPy1336 COG2801 # Protein_GI_number: 15675275 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 1 73 6 77 268 63 43.0 1e-10 MRMARSTYYLEINKADVVANRNQELLAEITEIFEQHKHRYGVRRVHRELINRGYRINHKR VQRLMHEAGLFGK >gi|308165397|gb|AEHO01000020.1| GENE 2 238 - 807 700 189 aa, chain - ## HITS:1 COG:SMb20826 KEGG:ns NR:ns ## COG: SMb20826 COG2963 # Protein_GI_number: 16264314 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Sinorhizobium meliloti # 2 181 3 176 177 61 30.0 9e-10 MRYSYAFKRKCVEMYYQGLYPDTPDGICGKEFHRTIRKWVRIEESCGPEALKHKAQNKVW SPEDKYALVARVLSGESNKSVALTSGINEGMLYQWVRKYKIYGYNGLISKPKGRKSRDPD MKKIGTREPKKLNESEYEELIRLRAEITYIKAENEVIKKEIALREEKEAARLKAKKQQSS KNSVKKDTH >gi|308165397|gb|AEHO01000020.1| GENE 3 882 - 1604 562 240 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309803151|ref|ZP_07697248.1| ## NR: gi|309803151|ref|ZP_07697248.1| putative membrane protein [Lactobacillus iners LactinV 11V1-d] putative membrane protein [Lactobacillus iners LactinV 11V1-d] # 1 240 1 240 240 303 97.0 7e-81 MFNKLFFYLFKQKAKTVLYCLLLNIICTVVIALTATHKIDYLIIVFISTSFFMNLGFLVN CSVTASKFLKKQTYRLLPMKDGYLYLANTASDFLNGLLLIAIESIIGILIVHFISFNFSK VLIGSFKLSVNTMSIVLTTISILLLSSFMLYCMLITCLLLTKICMDFLPIVLQNIRKFIS VIIYIIMLLVFSRIIEYFKSLLYNESNQSTLVFFYIIGIIIIIGINYFIFNKYHEADVNN >gi|308165397|gb|AEHO01000020.1| GENE 4 1622 - 1831 160 69 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2280 NR:ns ## KEGG: Lbuc_2280 # Name: not_defined # Def: ABC transporter-like protein # Organism: L.buchneri # Pathway: not_defined # 1 69 161 230 237 72 51.0 4e-12 MSRKKILQSIIKWLPQDATVFLSDHNIEEVHQIIDRIVLIKDKTIVADETAEKIRSNGES IEEFYLKFY >gi|308165397|gb|AEHO01000020.1| GENE 5 1900 - 2205 128 101 aa, chain - ## HITS:1 COG:BH0382 KEGG:ns NR:ns ## COG: BH0382 COG1131 # Protein_GI_number: 15612945 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 1 101 33 133 230 62 32.0 2e-10 MGENGAGKTTLFRLIAGLGKGYTGSIAVAGETSIDKIKENISFNDKLDAFNLYTKLKEIK DFYAKFYKDFELEKFDNIISLLDIDMSKRLGELSKGKKKAL >gi|308165397|gb|AEHO01000020.1| GENE 6 2302 - 2676 468 124 aa, chain - ## HITS:1 COG:BS_yhcF KEGG:ns NR:ns ## COG: BS_yhcF COG1725 # Protein_GI_number: 16077971 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 2 115 4 117 121 87 35.0 6e-18 MKFEDNLPIYYQIEQQLYYDIVLGKLQPGEKMPSVRQLALDFTVNINTAQHVLSNMQDKG IIYSKRGLGSFVTDDVNLILVLKDEIISKMFSDFLSKTKKIGLSNQDTIDKLQTFVLKEG PKNE >gi|308165397|gb|AEHO01000020.1| GENE 7 2987 - 4231 1221 414 aa, chain - ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 1 406 1 408 413 426 53.0 1e-119 MEYPTLLPRFLKYVKINSRSDENSQRFPSTEIEEKFQKIILNDLKELGLQCYYNQKSGCV IATIDSNVDYDVPTFGLLAHCDTADFESNNINPQITHNYDGVSKIKLGDTDFYLDPAIFP HLKKYKGQTIISTSGDTLLGGDDKCGVSELLTFAEYLVNHPEEKHGEIKLAFTPDEEIGT GASHFDVEDFGAKFAYTVDGEGPGKLDWGTFSAAQFSLDIQGIDVHPAQAKDKMINAIKL AIDFQNQLPQNEVPEKTAGEEGFYHLLKFDGTVDHAHLEYIIRDFKRDNLEKRKELVQNI VNKINDQFDQKRVVLKMADQYYNMADELKKNMEVVDLARNAYKALGLTINEDPVRGGTDG SQLTYMGLPCPNLFAGEENMHGRYEYTVLESMWLAVDVLRKINELHLKKYQKLI >gi|308165397|gb|AEHO01000020.1| GENE 8 4251 - 5048 749 265 aa, chain - ## HITS:1 COG:SPy0931 KEGG:ns NR:ns ## COG: SPy0931 COG0327 # Protein_GI_number: 15674951 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 2 264 1 262 262 176 37.0 5e-44 MMKVKDIITILNKAFPEDIASKNDPVGLQLGSINNTVSKIMTTLDVRPEVVDEAVKNKVD LIISHHPLMFFPAKNLDFANPQNAMYAKLIANGITVYSIHTNSDKALHGSSEWQAHQLEL HDIQPFCLDDDLIAIGRKGKLPEPMTAYKFAYYVKQKMNIKMVRLITANNEKLINSVAFI CGDGGKYWRQALIEGVDAFITSDIYYHVGHDIISSGLTVVDPGHYTEELFKYKIAEQLKT WLANADSSISIMVSKTNTNPFQDLF >gi|308165397|gb|AEHO01000020.1| GENE 9 5035 - 5718 624 227 aa, chain - ## HITS:1 COG:lin1490 KEGG:ns NR:ns ## COG: lin1490 COG2384 # Protein_GI_number: 16800558 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Listeria innocua # 1 223 6 234 234 154 37.0 1e-37 MEERLKQIASLVDDQARIADIGTDHAYLPIELVKDAKISFAIASDIAQGPLNNAKKDILA AGLVNQIETRLGSGLLTIHPEDKIDTIVMAGMGGTLMVNLLNASPTQYPTLILEPNVGEA NVRLWLMNNNYRILAEKIIETAGHIYEIIKAVKSTTAVPLTEMEINFGPVLMQNKNKIFY KKWSNQLLFQQKLLHNLKKAKVIDDLKVKQVTKLIMMIEEMIKDDES >gi|308165397|gb|AEHO01000020.1| GENE 10 5779 - 6927 1172 382 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 24 382 16 374 374 463 73.0 1e-130 MAENNTTNNGNQNLQASKASTTTLSQVVKNIIKEVKTSKEIKEDDFVARMVKPYQLEGKA IDQLVQEFEDNGISIVDNDGNPSNLSLKKQKDVEKAELNDMTAPSSVRMNDPVRMYLKEI GRVPLLNADQEIDLAKRIENNDDEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNM GLMKAVDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQL LQDLGREPTPEEIGAEMDMSTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATS PEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLNDGRTRTLEEVGRVFGVTRERIRQI EAKALRKLRHPSRSNQLKDFLD >gi|308165397|gb|AEHO01000020.1| GENE 11 6939 - 7226 171 95 aa, chain - ## HITS:1 COG:no KEGG:LJ1318 NR:ns ## KEGG: LJ1318 # Name: not_defined # Def: DNA primase # Organism: L.johnsonii # Pathway: DNA replication [PATH:ljo03030] # 2 93 510 601 603 79 41.0 7e-14 MVKLFRKNPNPNISGFADFIPKDLQSIIVNMELTDMPYTFSEGEIDDQIASLIKQKTILE IQRLYDQIKVAQQKNDSQLIIQLTQKIIELKRKII >gi|308165397|gb|AEHO01000020.1| GENE 12 7254 - 8741 1138 495 aa, chain - ## HITS:1 COG:BH1375 KEGG:ns NR:ns ## COG: BH1375 COG0358 # Protein_GI_number: 15613938 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Bacillus halodurans # 1 474 1 462 599 331 38.0 2e-90 MAGHIPSNLIDEVRSAVNIVDIISQYVSLTKKGKDYVGLCPFHQEKTPSFTVSESKQFFK CFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIYKKNPIKQIYFDAT EFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQDLLE QSGLFIKNEKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETPLFTK SKLLYHFSEAKHAVNAENHLILYEGYMDVIAAYKCGIKTGVASMGTSLTSQQVYMLRRVT PNIIINYDGDDPGQHAMERAIKLFNYPNMNLGIVSLPENLDPDEYVKKYGPEKYVNEVKA ATTSTEFLLQRMAKKYNLFNDRDKLDFINESITLIAKNDDPIEIDIYIQKLAQKLQVSVE SLKARLLREQRKIRTAINHQKQIQALYPADEVTPKQLDNVHDSSASFTEQKRLLFLFIHN DNARLYLLTKKFYFS >gi|308165397|gb|AEHO01000020.1| GENE 13 8760 - 10829 2144 689 aa, chain - ## HITS:1 COG:lin1495 KEGG:ns NR:ns ## COG: lin1495 COG0751 # Protein_GI_number: 16800563 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Listeria innocua # 1 689 1 688 688 602 44.0 1e-172 MTKDYLFEIGTEEMPAHVVAKSVKQLADRTGKFLKDNGLSFKNIKTFSTPRRLTILVQEL AEKQADIDEIKKGPSKKIALDKDGNWSKAAEGFVRGQNMSVDDIYFQKIKDVEYAYIHVK KEGKKATEILLGMDQIVKELAFPTKMRWGNYDLEFVRPIHWIVSLFGSEIIPVKILDIVA GRKTYGHRFLGESLVLATSDDYESALKSQFVIADANQRKNMILSQINSLCEKNDWQVKID SGLLEEVTNLVEYPTIFSGSFNEKYLNIPKEVLITSMKDNQRYFEVYDHEGTLINHFIAI RNGNSDYLDNVIAGNEKVLVARLDDAQFFYDEDKKYPLSHFVEKLSSVSFHDKIGSMAEK MLRVKLIGEYIGEKINISSSELADFDRAADIYKFDLVTNMVGEFAELQGIMGTHYAELAG ERKAVSQAIKESYLPSSADGDLPTTKIGSLLSIADKLDTIIAFFGAGMIPNSSNDPYALR RSAYGIVRILINQSWNISIEDALKDIIALLKGKTVAKLPNDEATQAEISDFIINRVKQLL QVKKYSYDVIDTVLASNQQNVANILSIADILQENHDDSKFKKVVESLTRIANILKKADFS EAEQINPDLFENNSEKALYDKINLLLDKSLDVKTLYSEFVQLQPVIDEYFDSNMILDKNE AVKINRLSQLKLIDKLALEFGDLSKLVIK >gi|308165397|gb|AEHO01000020.1| GENE 14 10831 - 11736 994 301 aa, chain - ## HITS:1 COG:SP1475 KEGG:ns NR:ns ## COG: SP1475 COG0752 # Protein_GI_number: 15901325 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 298 1 298 305 446 69.0 1e-125 MEEKLNVQNMIFKLEQFWASKGCMIMPSYDEQKGAGTMSPYTFLRAVGPEPWAACYVEPS RRPADGRYGNNPNRLYQHHQFQVVIKPSPKEIQQYYLDSLRILGIEPLEHDIRFVEDNWA NPSMGCAGVGWEVWLDGMEVSQFTYFQVVGELDVKPTMSEITYGVERLASYIQDVNSVFD LEWADGVIYRDIFKQPEYEHSKYAFEASNQAELLKFFDTFEATAKELLNQHLIHPAYDYI LKCSHTFNLLDARGAVSVTERAGYLARIRTLAHMAAKGFVEEREKRGFPLLKHQEESKKE D >gi|308165397|gb|AEHO01000020.1| GENE 15 11990 - 12655 447 221 aa, chain - ## HITS:1 COG:BS_yqxN KEGG:ns NR:ns ## COG: BS_yqxN COG1381 # Protein_GI_number: 16079582 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Bacillus subtilis # 1 220 25 243 255 125 30.0 4e-29 MTAENGIFTLLIKGGLKPKSRLLPATINFSYGNYLINTNYCGLSVLRNYKVVHQLEHIYF DFKGNAYANYLLDLVDHAYADYQPLGKNYYLVFNALVKINEGIDNEIICQMVELKLLSAF GTMPEFRHCVFCDASQGIFDFSLQLGGIVCKNHFGSANTRMCLDVKTMGLIRTLALIDIQ QLGQINISDNLKQQSRKFIDILYGQYLDLHLKTKKYLKEVL >gi|308165397|gb|AEHO01000020.1| GENE 16 12739 - 13641 889 300 aa, chain - ## HITS:1 COG:L0155 KEGG:ns NR:ns ## COG: L0155 COG1159 # Protein_GI_number: 15672333 # Func_class: R General function prediction only # Function: GTPase # Organism: Lactococcus lactis # 1 299 1 301 303 335 54.0 7e-92 MQNKEYKSGFVALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIF IDTPGIHKPKNNLDDFMDKSSYSALNDVEAVLFMVDPEPAGKGDMFIIDLLKNVACPVFL IINKIDTVHPDKLLPIIDSYNKLVKFAEIIPISARQGNNIDDLIKTLVKYLPQGPHYYDS EQLTDKPEYFIVAELIREQILQLTHAEVPHSAAVLVDKMSDFDKGKLQIFATIFVEKEGQ KGIIIGKNGQMLKNIGMHSRVEIEKLLGDKVNLHLWIKVHKNWRSDPVFLKKIGYNVKDL >gi|308165397|gb|AEHO01000020.1| GENE 17 13657 - 14184 683 175 aa, chain - ## HITS:1 COG:SA1399 KEGG:ns NR:ns ## COG: SA1399 COG0319 # Protein_GI_number: 15927150 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 6 161 4 152 155 100 39.0 1e-21 MTEIDISFNDEVDFFSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVNINKIHEINK NYRGKDRPTDVISFAIEDGTDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEYETGFY REFGYTLVHGYLHLNGYDHIQDDEAEVMFGIQSKVLEEYGLPLHPDQETHGKQIH >gi|308165397|gb|AEHO01000020.1| GENE 18 14181 - 15143 1052 320 aa, chain - ## HITS:1 COG:lin1504 KEGG:ns NR:ns ## COG: lin1504 COG1702 # Protein_GI_number: 16800572 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Listeria innocua # 12 319 12 319 319 375 60.0 1e-104 MISNNVVTFTPSDPKNIVNLVGINDANLKLLEETYDISIVENGNTIQLSGDESTVASAVA VLNALDKVITDGIMISATDVISASKMAEKGTLEYFGELYNQVLIRDSKKRPIRVKNMGQK RYIDAIRQYDVVFGMGPAGTGKTFLAVVMAISAFKKGEVSRIIVTRPAVEAGESLGFLPG DLKEKVDPYLRPIYDSLFTILGVETTSRLMDRGLIEVAPLAYMRGRTLDDAFVILDEAQN TTHAQMKMFLTRLGFNSKMVVNGDQTQIDLPGRARSGLLESEKILANVEQVKFIKFSFND VVRHPVVAKIVKAYEEEENR >gi|308165397|gb|AEHO01000020.1| GENE 19 15163 - 15606 515 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 147 1 147 147 202 69 5e-51 MTLIESLMKDMKAAMKAQDKETLTTIRSLKAAVMYYKIKQGHELTPEDELTVLASAIKMR KESLEEFKKGGREDLVEQTEHELAIIAKYMPKQLSETELEQVIIETISEVGASGKQDFGK VMKVLMPKIKGKADGKLASEILKKKLS >gi|308165397|gb|AEHO01000020.1| GENE 20 15703 - 15879 292 58 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 [Lactobacillus acidophilus NCFM] # 1 58 1 58 58 117 100 3e-25 MAKTIVHENESIDDALRRFKRSVSRSGTLQEYRKREFYEKPSVRRKLKSEAARKRRHY >gi|308165397|gb|AEHO01000020.1| GENE 21 16081 - 16236 184 51 aa, chain + ## HITS:1 COG:no KEGG:LJ1326 NR:ns ## KEGG: LJ1326 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 9 48 12 51 280 78 90.0 9e-14 MCNKDKVEVNLIIISDAVGDTAFNMVQAGAVQYPNATFNYRRYPFITDTKN >gi|308165397|gb|AEHO01000020.1| GENE 22 16314 - 16913 703 199 aa, chain + ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 2 190 78 266 270 188 46.0 7e-48 MIIKFAREHNMKHVDLLSGIIDKIHEITKEDPKHVIGAVHHMGQRYFDRISAMEFAVMYD DGKDPKGFLEADVVLLGVSRTSKTPLSLFLANRNIKVANLPLVPQTHIPDEIYKVDPKKI IGLTNDPEVLNEIRRQRMISYGLNPDTTYSNMDSINAELNSAKQLYDKLGCYVINVAHRS IEETAALIMSHLGIDNFSK >gi|308165397|gb|AEHO01000020.1| GENE 23 16965 - 17843 641 292 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 10 288 32 310 313 260 44.0 2e-69 MDHFERLSRRHNFISKLSAAFFYALAVAVALNFFWHPGKIYASGVTGFSQVLESLSSRYL PFTLTTSSMYFVLNIPLFILGWLKIGKKFTLFTIIAVILASIMMKLIAPIKLSYDPIICA IFGGVVNGVGTGIALKSGISTGGIDVLGIILRRKTGKSFGQINIFFNLIIVICAGFVFGW TRALYTALNIFINGRVIDAVYTQHQKMQVIIVTEHPTEIVEQIQEKMHRGITILHDAEGA YSHNEKTVLITIIDRYDMYDIYNIVSKNDPYAFMSMSEVSKIYGRFIEQKPV >gi|308165397|gb|AEHO01000020.1| GENE 24 17969 - 18541 610 190 aa, chain - ## HITS:1 COG:NMB1796 KEGG:ns NR:ns ## COG: NMB1796 COG0431 # Protein_GI_number: 15677635 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Neisseria meningitidis MC58 # 1 189 3 190 190 233 62.0 2e-61 MKKDVVVLVGSLREQSYARKIAKNAIDMFSDEFYAEIVEIRDLPLYDADYDDINNINKPL PESYVQFRKKIKDAAGVLFVTSENNRTIPACLKNAVDVASKPKGDVAWTNTPVAVISHSV GAMGGYSANKNLRLALSYFTMPTVQQPEVFLGHSPELLDESGKFNNEATFNFVKKYIEQF EKLIKDNPKD >gi|308165397|gb|AEHO01000020.1| GENE 25 18622 - 20460 2152 612 aa, chain - ## HITS:1 COG:L0346 KEGG:ns NR:ns ## COG: L0346 COG0173 # Protein_GI_number: 15673947 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Lactococcus lactis # 4 586 3 588 590 653 56.0 0 MEMRTDYCGNITSKYENQNVTIYGWVQRVRKLGKLIFIDLRDREGIVQVVVNQDSGDALM DVAQKLGNEYVVEVQGKVVRRSNVNKEIKTGEVEINATNIVVLNESKNPPFEIKDDVTAA EQTRLKYRYLDLRRPSLQHSIILRSKILHAIHDYFDQEGFVYIETPTLGKSTPEGARDYL VPSRVYPGSFYALPQSPQLFKQLLMGAGFDKYYQIARCYRDEDLRGDRQPEFTQVDLETS FLDEKGVQIYTEGLLKKVMKDVMGIDIVTPIKRITWDEAMNKYGSDKPDIRYDMHLHDLS EIFKDSEFKVFADTLSNGGVIKGIAVKGGAEAYSRKKIEEKQEYIKRYHAKGIAWVKYEN GEFTGPIARFLTENQKRDLISEFELTGGELITIIADIWKVVTDSLDYLRRTFAKETGIIP QHEFKFAWVVDWPLFEYDEGDQRWIAAHHPFTMPDDKGIELLETEPHKAHARSYDIVLNG YELGGGSIRIHKREIQEKMFKALGFTKERAYEQFGFLLEALDMGFPPHAGLAIGLDRFAM LLAEKDNIRDVIAFPKNASASEPMMHSPAPVADKQLADLGINVMSEHVEANAEIEARLKK EANDLADKNRTW >gi|308165397|gb|AEHO01000020.1| GENE 26 20463 - 21749 1319 428 aa, chain - ## HITS:1 COG:SPy2157 KEGG:ns NR:ns ## COG: SPy2157 COG0124 # Protein_GI_number: 15675899 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 424 426 440 53.0 1e-123 MRVQKPKGTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDV VEKEMYDFMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYERPQA GRQREFHQIGVESFGSDNALADVETIVLAHDLLSTLGIKKYELHINSLGNEAVRTAYRQA LVDYFTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIEFVSNAPRIRDYLDDESKKNFEFI IKTLSELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNHLVEEFDG PKTPAVGFGIGEERLMLVLKAQNPELLTDSNIDFYITNIGEETITKTVEIARELRKQGLK VQYDVEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIKRLSDGKSYAFNMDEIANVN DLLQKLER >gi|308165397|gb|AEHO01000020.1| GENE 27 21996 - 22433 540 145 aa, chain - ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 144 1 143 147 140 54.0 6e-34 MRVVVQRVLQAKVEIDQAEISSIDKGMLLLVGIGMSDTRDIVKKMATKISKIRIFEDDCG KTNLNIHEVNGKILSVSQFTLLADTKKGNRPSFVNAMKPPMSLDLFNYFNECLVNDGNVV ERGQFGADMQVSLINDGPMTIVLDL >gi|308165397|gb|AEHO01000020.1| GENE 28 22433 - 24289 1543 618 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 618 131 738 738 696 55.0 0 MAKDLRVIMVKLADRLHNMHTLDHLRPDKQRRIADETLDIYAPLADRLGIGTIKWELEDM SLHYLNPQQYYRIVNLMQSKRSERERYISSAISTLKANLDDLGIKYEIFGRPKHIYSIYK KMVNKHKEFSEIYDLLAVRVIVKTVRDCYAVLGAVHTKWTPMPGRFKDYIAVPKANGYQS LHTTIIGPGGKPLEIQIRTEKMHQIAEYGVAAHWAYKEGVQTAVAETPSSKKIDMFREIL ELQDETKDSHEFMNSVKTDIFSDRVYVFTPKGDVYELPKGSVPLDFGYMIHSEVGAHSVG AKVNDKIVPLDYQLKNGDVVEMLTQSSATPSRDWIKLVKTSSARNKIKRFFKSEDREKNI EKGIELVEQELQTRGLSSKTYMDKSHVNIVIEHFNYHNEEELFAAAGFGEISPASIVNRL TQDLRKREENERKRQLEAEIMNAGQQKINPVSEKHESSNGVMYIKHNNGVMIQGVSDLML RLAKCCNPVPGDEIVGYVTKGRGVTVHRADCRNINGAAKSQGRLIEVAWENVGENNTAEN FNADIEIYGFSRSKFLSDVINALNSKTKNIINISGKTDNNNMAHIYATVSVRDTAHLEEI MGRLRDIANVYEVKRSVN >gi|308165397|gb|AEHO01000020.1| GENE 29 24352 - 24684 502 110 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 110 1 110 738 136 57.0 8e-33 MSKYVEMTHDEVLAACKKYMNEEHVAFVEKAYAFAKDAHEGQFRESGQPYIIHPTQVAGT LASLGLDPDTVAAGYLHDTVEDTPVTNEDIKKEFGKDVAFIVEGVTKLKK >gi|308165397|gb|AEHO01000020.1| GENE 30 24694 - 25074 257 126 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0856 NR:ns ## KEGG: LGAS_0856 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 16 126 16 126 126 112 52.0 5e-24 MKKVLHKISEIVSIEFWHKLNQKSYMPIVFLATFCIILSLLCSLAHLRKVWLVALIFLIF NSYISFQIGCLIDFHKLSKKWLLFFPIIFALMVTVHFAKYNYFFCLIYLCFELLGLWHND LYQVRK >gi|308165397|gb|AEHO01000020.1| GENE 31 25111 - 26043 808 310 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227890128|ref|ZP_04007933.1| ribosomal protein L11 methyltransferase [Lactobacillus johnsonii ATCC 33200] # 1 310 1 315 315 315 49 5e-85 MQLNGVQIMCSSELEEPLTYFLQSDLAAKGIEVRRRSDFDDVLTANILAQDANEIPDDME LTAYFAIGIEISDIISQIKAKLLELKNYGFKTDNVEFKVIQVCDKMWQNQWEKFYHRVDF SRSLAIVPEWECPKPLNPHQIVIKMNPKQAFGTGTHITTQLMLMVMERVLLSEMSVLDVG TGSGILSIVASKFGASNVCATDISDDAIASAKKNLALNDIDNVELKQANLLTGVKGKYDL ILANMLAEILYQLIPHLSDHLARNGRVIMSGIDCEQLPRIEKLLSENGFTVSLKIQEKRW FCILVSQKSN >gi|308165397|gb|AEHO01000020.1| GENE 32 26105 - 26611 418 168 aa, chain + ## HITS:1 COG:SP0985 KEGG:ns NR:ns ## COG: SP0985 COG2606 # Protein_GI_number: 15900860 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 6 167 3 157 160 134 45.0 6e-32 MSKKNKKQNLKKTLVEKILDQHKIPYSQLQFNVTQHGDVKQIDTTILAEDEHLVYKTLVC EGNQNSPIIAVVPVTEHLSMKKLATISNNKKCELLPLKKLLSTTGYVHGANTPIGIYEKF HYPIFLDNSMKNEPLVAVSSGEVGRSVKLNPNDLATLTNATFCDLLDK >gi|308165397|gb|AEHO01000020.1| GENE 33 26666 - 28045 1172 459 aa, chain - ## HITS:1 COG:Cj1165c KEGG:ns NR:ns ## COG: Cj1165c COG3610 # Protein_GI_number: 15792489 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 319 437 5 123 164 61 34.0 3e-09 MSKKNSNMKHENCSSNKCHTLSHHHHMRIRWHEFFTSKSSTLAKEATLSERSVIVGHVGM MLLSFGTGAWRVRSAMNTMARNLNMTCSADIGLVSLEYTCVDEFGHSYTQALSLPSTGVN TAKLNKMEAFVSQFEKDHGNWTIEKIHNTLEEITKQKASYQPWQVALASGIACGGFTFLL GGGIFEVIYAFFGAMAGNYARRKMIDKRMTVLANVIVGVLVACCVYALAFYISNLFMRVS ARHLDGYIGAMLFVIPGFPFITSGLDISKVDMRSGLERMAFASMIIIVATAVGCIIALVL HLHPQDFLPLNLDPVILTILRLFASFCGVFGFSIMFNTEVKMAMLAAVFGAIANTMRLSL VDFVNWPPALAAFLGAFLAGILASIVRKKIGYPRIALTVPAIVIMVPGLYMYRAMFNLTL ASFVQGEIWSIKALLIVISLPLGLITARILTDPKWRHAG >gi|308165397|gb|AEHO01000020.1| GENE 34 28169 - 28870 772 233 aa, chain - ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 231 1 231 231 254 68.0 1e-67 MFNIFEKYLPNVVAQGWSGDAGWQTAILQTLYMTFWSALFGGLLGLVFGLGLVLTRQKGI LENKLLFSIIDKTVSVFRAVPFIILLAFVAPFTKALVHTQIGETAALVPLTLGVFPFFAR QVQVALESVDLGKIEAAQALGATTLDLIFDVYLKESRSELIRVSTVTLISLVGLTAMAGA VGAGGLGNTAISYGYNRFNNDVTFVATILVLLLVLIIQLVGDYLAVKFNHQER >gi|308165397|gb|AEHO01000020.1| GENE 35 28863 - 29912 1109 349 aa, chain - ## HITS:1 COG:L121289 KEGG:ns NR:ns ## COG: L121289 COG1135 # Protein_GI_number: 15672304 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Lactococcus lactis # 1 343 1 362 368 302 50.0 8e-82 MAKQISLKDISVIFDGNVAVDKVSLQVEKGDIYGVIGFSGAGKSTLVRTINLLQKPTSGS ITVTNDILFEDGKQKIDAKQLQEKRRKIGMIFQHFNLLNEAKVIDNVAFALKHSQLSEKE IHTKCLHLLELVGLQDKANFYPAQLSGGQQQRVAIARALANDPDILISDEATSALDPKTT NQILDLLYELNQKLQLTIVLITHEMDAVKRIANKVAVMEDGKLIENGNLLDVFLHPKQKL TKQFVGGALEVQHILNTYSLNEIAPNDQLYQLVYGIDDVTKSVVADLDEKVGTKASILYG NVEVLGGKLIGTLAILLKLDANKEQEALQFLRDRNVIVTKLDKDVLRNV >gi|308165397|gb|AEHO01000020.1| GENE 36 30293 - 31885 1522 530 aa, chain - ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 2 530 12 538 540 674 60.0 0 MAGHTLYEDVNLKFTPGNCYGIIGANGAGKSTFLKLLEGKIEPTTGSITIGANERISSLN QDHFAFEAFTVMETVIQGHKQLYDVMKQKDALYAKADFSDADGVLAAELETKFAELDGWN AEADSAKLLQSLGVAEELHQTMMSELPESVKVKVLLAQALFGNPDILLLDEPTNGLDVHT IEWLENFLANYENIVMVVSHDRHFLNQVCTQMCDVDRGKIQLYVGNYDFWYESSKLATEL ANNQNAKKEEKIKELQTFIARFSANASKSKQATSRKKQLEKITLDDIKPSSRKYPYIKFD MHRELGNDLVKVENVSYSVDGRKILDNVTFSVRPGDKVAFISRNTVAISILLQIIAGKLE PDTGSVTWGQTTAFNYLSRDLNANFNDSELTILDWLRQYASKEQEDNTFLRGFLGRMLFS GDEIDKKIKVLSGGEKVRCQLSRLMLQPSNVLILDDPTNHLDLESITALNEALKAYPGSI LFTSHDHEFIQTIANHIVEVGSKGIVSRQDITYDEFIDHEIVQQQIKDIY >gi|308165397|gb|AEHO01000020.1| GENE 37 31933 - 33492 1334 519 aa, chain - ## HITS:1 COG:BS_amyX KEGG:ns NR:ns ## COG: BS_amyX COG1523 # Protein_GI_number: 16080045 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Bacillus subtilis # 2 495 185 689 718 441 44.0 1e-123 MVTINGKYGVLSDANKIKPENFDRMSPFSKATDAIIYETSVRDFTIDVNSGVKNKGKFLG MIESDTETPLGLSSGLDYLKKLGITHVQFMPIYDFGSIDESIPDAYNWGYDPANYNVPEG SFASDPADPASRIMEMKQMIKGLHDAGLRVSMDVVYNHVYIRRMHALEKTVPGYFFQYRD GKPTNGSACRNDVASERLMCRKYIYDSVMYWAKEYKLDGFRFDLMGILDVDTMNQIKQGL NEIDPSILVYGEGWDMRQTNHEIGAGQYNANKLPGISFFSDDFRDSIRGSEFAGVEPGLV FDMDHYGYYRASRMFIAGFLGGKFYSSLSNHPYQSPMQTINYVECHDNYTLFDKLKLLMP NIDEKEIHRRAKLALAMAILAEGIPFINSGQEAFRTKQGDPNSYSSGDQINKIDWNRMSK NKDDVLYLSELLKIRKKYDVFRLDDYSEIEKRIKLLIAGQNGLFAFSYDQNIIVIFNVFN DQKTNLGLDMTGFKKIFSSDADQDCHTVAPLSVNVFVRK >gi|308165397|gb|AEHO01000020.1| GENE 38 33576 - 33803 217 75 aa, chain - ## HITS:1 COG:no KEGG:LA2_02565 NR:ns ## KEGG: LA2_02565 # Name: not_defined # Def: thermostable pullulanase # Organism: L.amylovorus # Pathway: not_defined # 7 74 394 461 1194 69 42.0 4e-11 MLSIDEIQSPEFDMKYFYDVDDLGATFYDDKIKLRLWAPTAEKVCVNLFANYQSDAPKLA SLEMAKSEKGTWLIF >gi|308165397|gb|AEHO01000020.1| GENE 39 33940 - 35226 1602 428 aa, chain - ## HITS:1 COG:L0008 KEGG:ns NR:ns ## COG: L0008 COG0148 # Protein_GI_number: 15672258 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Lactococcus lactis # 6 422 5 421 422 505 62.0 1e-143 MLKSVIENVHGREIFDSRGNPTVEAQVTLSNGVVAIAEVPSGASTGENEAVELRDGDSRL GGKGVMKAVNNINTEINAALKGMDPYNQALIDQTMIDLDGTPNKGRLGANAILGVSMAVA RAAALDCHQPLYRYLGGTDLEMPQTFHNVINGGEHADNGIDIQEFMITPVKKTSFRDGFE KIVNTYHTLKKVLEEMGYETGLGDEGGFAPNMKNSEEALKALHEAIIRAGYKPGEDIAIA CDCAASYFYNKEDGKYHLEGKVLDDEELAEYYDKLLAEFPELISMEDPYDENDVEGMVKF TQTHKDRLQIVLDDFICTNPKLLNKAIHEGAGNASLIKLNQIGSVTETLETVRLSRKNGY NTMISHRSGETGDTFIADFAVAVNGGQLKTGAPARSERVEKYNQLLRIEEELGAGERLAF FPDNVDLD >gi|308165397|gb|AEHO01000020.1| GENE 40 35380 - 35934 330 184 aa, chain - ## HITS:1 COG:no KEGG:Ldb1292 NR:ns ## KEGG: Ldb1292 # Name: not_defined # Def: putative membrane-associated phosphatase # Organism: L.delbrueckii # Pathway: not_defined # 30 184 38 192 195 78 31.0 1e-13 MELFILILVFWHLVMINKIQNMDDVTKMSKEVTVKFKLLWKIITYVFLPIDIMLACIFVS TILWINGNPKLACWFLLSLILTDVVGIALKIAIKQKRPTNSICHRKGYSFPSGHVLSAMT LIYLLIFTFNLEKNIIWLCIFNLLLLGIISSRIFLRQHHLLDVIASLVLSRICFLIAIFI WRIL >gi|308165397|gb|AEHO01000020.1| GENE 41 36237 - 38495 2082 752 aa, chain + ## HITS:1 COG:Ta1045 KEGG:ns NR:ns ## COG: Ta1045 COG0474 # Protein_GI_number: 16082076 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Thermoplasma acidophilum # 5 744 21 770 780 397 32.0 1e-110 MEIKGLTQKEADKRLNIDGLNDVPDPKYNFWQAFASKLWNISAWILEAALILECFLGKWI QSFFVLLMLLFAAFNGATQKKKSRKVLNMIAHKLNPLVIVKRDNIWKQIDAKFLVVGDLI SLKKGDILGADAKLVQGHLQVDQSAISGESNLIDKKETETILGGSIVIKGEALATIMATG KNSRNGKTINLINTSAAPGHLQKLLTAIIYYLCLLDGILTLILIFFAIIHGKNILDMLPF LAMMFIASIPVAMPSTFALSNSFEATKLSQEGVLTADLTGIQDAANLNLLLLDKTGTITE NKTSVFKWYNLCQKADKEVLSYVSATLDEKNSGIIDDAIFTFLKQKNIKLIKADKYISFT SDKGYSQAQVGNLDLKLGSFKQLSQLDTTSIEKIGQINFENGRSVAFLINNKLAGIFILK DTIRPDAITTLQEIKNRGIKAIMLTGDNQKTAQSIAAQVGLQGEVISINNFTENLNIHEL AGIADVLPEDKLFIVKLLQQKGFIVGMTGDGVNDAPALKQAEVGIAMHNATDIAKKSSKM VLLQDGLSPIIKILDAGHRVYHRMTTWSLTKLSRTAELTMLLTIGFICLNYIPMALNAMV IYTIMNNMVTMMIGTDNTYVSYHPENWDILKLAKRAFSLASGFMLSGLALLYFCTQKQIA PAKIGAIIYIYLVFSAMLLVLITRSKTYFWKSLPSKYVYITQLINIVITLIITTIGLGIQ QLAVSEIGLAILFSLLAAIIIDVIYKKITVKN >gi|308165397|gb|AEHO01000020.1| GENE 42 38501 - 40426 1653 641 aa, chain - ## HITS:1 COG:BS_amyX KEGG:ns NR:ns ## COG: BS_amyX COG1523 # Protein_GI_number: 16080045 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Bacillus subtilis # 12 579 91 641 718 419 37.0 1e-116 MEKHVLKKFYGLTSPEFDRENYYGGSDLGLSFEKDKVIFKIWSPIADTVTVRLYHDLNNN SISDREITLDKEKAGVWTCIISSKYIGWAYDYKFTFCDGTVTYANDPYAVAATINGVRSV IIDIAKIEVNDLVKLPSFTNPTDAIIYETSVRDITADKNGGFKYPGLFLGLSEKNTHTAQ GYATGLSYLKSLGITHVQLLPMFDFGSLDEADPNHGYNWGYDPINYNVPEGTYSTDPADP VCRIKEMKYMVNELHRAGIRVVMDVVYNHVFDIHKQAFEQVVPGYYFKHDEKGNMIDDIG MGNAIASQRLMVRKYIVDSVIFWIKNYHIDGFRFDTMGVLDVDTMNLVVEEAHKIDPGIL IYGEGWNIKPIERPFESGHDHASLMPNVGFFGENLRNAVIGESGEYADYRPGLVQGNLAE VGASGKKYYEQDVCEFVKGFMGSNGFHTYIAPHQLINYSTCHDNFTLYDALIAHLPNASR PEIIKRAEMSLAMILLAEGVPLIHSGQECLRTKNGNVNSYNAPIEENKIDWLRVEQNQDL IEFFKKLVNIRKKYSIFRIDDYQEISRIVRPYVLKQNGIFAFEYTMPTCKLYVLFNIKNE TQLFNQIDLTGAKVILSNDNDLLLSQHSTLGALSTSIVILK >gi|308165397|gb|AEHO01000020.1| GENE 43 40556 - 42073 789 505 aa, chain - ## HITS:1 COG:SP1860_2 KEGG:ns NR:ns ## COG: SP1860_2 COG1732 # Protein_GI_number: 15901688 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 236 505 26 297 299 168 36.0 2e-41 MIDNIFNILNLKQTSIVFNFLMDELTILFVSFVVSSLLALLLHKCARLTKVINWLFKLIL VVPIFLLIASIFIKHNIVLTIYLYWIIGSAFATCVLFPVINNAFTKINPELKTTAVALGL SKKKIFFKIELPLVIADIIGGLKKIVFYSSIWLLIINLISIRNCRQISLIHFSKIQCNIA IVLTLSVLLLNFIFCLVKLFNAKFQWMFLIIVLLFGIVSLGAYSLNSIKIGSNSAKSEQI IIASKDDSQFDIIANMYKILLEKNKKYHVTFSRRKDDRQILKELRKGNIDIYPEETRKVF SLIDNSDKKFANIDELYRYTRDILYKQDLIYLTPMAYHNNYVLIADKEFAKQNKITKISD LQKYKSKLVVEMFKDFADSSNGYEGLKNVYKLDFPKMSVTTADQCYEKLRKRQVNLIAAK SNDPEIKKNNLLILNDDKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEMIQL ETKVKLEHKNAAKVAKAFLQRNKLI >gi|308165397|gb|AEHO01000020.1| GENE 44 42066 - 43019 683 317 aa, chain - ## HITS:1 COG:L64737 KEGG:ns NR:ns ## COG: L64737 COG1125 # Protein_GI_number: 15672829 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Lactococcus lactis # 1 257 1 260 305 153 35.0 4e-37 MIEYQNVSKKINRKTSLKNGSLNINNGDLLVIVGSNDSCKKIIIRLLNRLIEADEGDIWF NHKKITDYTIKDLRSKISYVSTQANLFNNLNIYQNLTISLDKNISGQDKQTIANTLLELI DMDKQCLNMKPHELTYFEQKKISLARAFAINPQVVLLDDSFDEMDKISQIKLHELLVRLK KHFHTTILMTTDDIADALKLASSIVIVNGSKIEQVGTARDISQHPANLFVKQLLENNHIG VSFDLETLLKSELGVNPRYYPKTDMLVRYHVYNFKDLVKDCSNHPDSLFIAETDFGEFLI EPKRVWNFLLKRLSTND >gi|308165397|gb|AEHO01000020.1| GENE 45 43059 - 44207 898 382 aa, chain - ## HITS:1 COG:L157472 KEGG:ns NR:ns ## COG: L157472 COG0477 # Protein_GI_number: 15672136 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 4 368 11 381 393 101 24.0 3e-21 MDVILVMAASFLFMFSVMFVTPLINGYALSLGADSILAGIITGSMSIVSIFLRPIAGNLV DLYSKYCLSLIGGILILIGVSGYWLVNTSGLLILFRLINGTGFVLATICMTTWLAFLVPR RFVGEAMGFYGLMNALAMAVAPLIAINSYKVIGYRYSMMIASLAAVIMLIMIKFVKNHAI PQNKLSLKNIKHIRIIQKDTIPVALLMLFFSIPYFATQADLVEYVAMRKLSVSVGYFFLI YALSLLIIRIWLKRFFDTIAFGFWFWLSLIAMIIFLISMAFMKNNFIMLIAAVALSIGYG VIYSINQTTALLLSPLDQQGLASSTVYLGLDLGMASAPILGGIIASTIPHFYFYPIMLIM VPFVLVIYFIYRKKLNGAIQNH >gi|308165397|gb|AEHO01000020.1| GENE 46 44337 - 45674 1164 445 aa, chain - ## HITS:1 COG:SA1150 KEGG:ns NR:ns ## COG: SA1150 COG0174 # Protein_GI_number: 15926892 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Staphylococcus aureus N315 # 2 443 3 443 446 538 57.0 1e-152 MKRILTADDIKMSVKDNDVCFLRLAFTDINGTMKNVEVPTSQLDKVLANEIRFDGSSIDG FVRIEESDMVLYPDLSTWMVLPWQDGTSGRIGRLTCSVHKVDGTPFEGDPRNNLKRILNE MKSMGYTDFEIGFEAEFHLFKLDENGGWTTNVCDHASYFDMTDSDEGAKCRREIVETLEG MDFEVEAAHHEVGNGQQEIDFKFDDALTTADRVQTFKMVVRTVAKKHGLCATFMAKPLEG EAGNGMHTNMSIFKDKRNIFYDANGKYGLSNEALYFLNGILEHARAITAIGNPTVNSYKR LIPGYEAPVYIAWANKNRSPLVRIPAAEEVTTRLELRSADPTANPYLLLAATLKAGLNGI KEAKMPMEPVTSNVFEMSEEKRKELGIKPLPSTLHNAIKAFKADKLIQEALGEHLTKSFI DSKELEWARYTQSVSEWERQRYINY >gi|308165397|gb|AEHO01000020.1| GENE 47 45779 - 46714 853 311 aa, chain - ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 2 307 3 308 314 229 41.0 7e-60 MKKIIVIVGPTGIGKTELAIKLAQKLNAEIISGDSMQIYQEVNIGTAKPTFAERAAVKHY LVDQQSIFTEYSVKEFVSQASKAIDEITAKGKIPLVVGGTGFYINALINKLQLGERESYN DSVDSKWLELLKSEGEHALWQKLNEKDPITAAKIPYQNHRRVLRALSVISRTGKLFSDQQ VDIEPRYDALIIGLNSDRQQVYERINNRIDKMMASGLLTEAEMIYHNLDKCHQVVQAIGY KEFFPYFKHEADLSYCVDKLKQASRKYAKRQITYFRHQLCVKWLDPLKDDHILDDMLILS NNFIHKKSKKY >gi|308165397|gb|AEHO01000020.1| GENE 48 46789 - 46968 264 59 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1381 NR:ns ## KEGG: LGAS_1381 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 58 17 74 75 77 68.0 2e-13 MSKKFGTGVATGILTTLGALAVGLFTYKKKVLDPEDKEDSRIADNRRKANRKSFSAHQS >gi|308165397|gb|AEHO01000020.1| GENE 49 47023 - 47424 417 133 aa, chain - ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 37 130 32 125 126 89 46.0 2e-18 MDKVLIILNVLLTVIILALAVNWLWLRWQAKRLGGKLTQKQFEEGKRKAQIIDLRTKDAF KNKHILGARSLPFSMIKYQYSEIRSDLPVYLYSDSLMINIRVAKFLNKKGYHKVYWLEDA FAKWEGQTKTSKY >gi|308165397|gb|AEHO01000020.1| GENE 50 47459 - 47677 225 72 aa, chain - ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 66 1 66 67 70 54.0 6e-13 MKNLYDVQQLLKKFNILVYVGKRKWDIELMALELDNLHKAGVISNKNYMTAKLILNHEHE IEVAKESGQCKD >gi|308165397|gb|AEHO01000020.1| GENE 51 47677 - 48375 433 232 aa, chain - ## HITS:1 COG:lin1374_1 KEGG:ns NR:ns ## COG: lin1374_1 COG0705 # Protein_GI_number: 16800442 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Listeria innocua # 7 183 173 345 345 100 34.0 2e-21 MIHIGIKRKYRKYTSRIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKL QFWRLFTAQFIHAGFFHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALG QDNVISCGASTAVFGLMGSVLALYFLNNDNIIAIIIGRQAFLLLICNIVVDFFMPSVDII GHIGGTITGFLLTIILGSIFFKDAPYKIRVLFCAIFIIYLVYCLRQGMVINI >gi|308165397|gb|AEHO01000020.1| GENE 52 48389 - 48940 428 183 aa, chain - ## HITS:1 COG:BS_yqgN KEGG:ns NR:ns ## COG: BS_yqgN COG0212 # Protein_GI_number: 16079545 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Bacillus subtilis # 5 181 2 178 187 103 34.0 2e-22 MLINKNEFRKQQLAKLRDFSQSYQKLQEDQFLQEKLIATSDFKKSVSIGITISTMDEIDT KLIINTAWQFNKQVFIPRCLPGRRMEFTQITDYNRLTKNKFGILENWQSQPTINNEPDII IVPGLAFKSDGYRLGFGGGYYDRFLAEHDLMSISMVGSLRLIEQSCWPINDYDIPVKKLI TIE >gi|308165397|gb|AEHO01000020.1| GENE 53 48997 - 49158 268 53 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116095596|gb|ABJ60748.1| Ribosomal protein L33 [Lactobacillus gasseri ATCC 33323] # 1 53 1 53 53 107 92 2e-22 MVEQMAEHIILECTECGDRSYLSEKNKRKHPERLSLKKYCPVERKTTLHRETK >gi|308165397|gb|AEHO01000020.1| GENE 54 49471 - 52005 3074 844 aa, chain - ## HITS:1 COG:L102360 KEGG:ns NR:ns ## COG: L102360 COG0308 # Protein_GI_number: 15672287 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Lactococcus lactis # 5 842 4 842 846 834 50.0 0 MGKNKRLFDVFVPEHYDIFLDVNREHKTISGVSTITGEAKANQIQLNQKYLTVEDVTVDG KKVEFNYNDKDELITISSDKIGKIKLVVTYNAKLTDTMMGIYPSYYEVDGVKKQLVGTQF ETTFARQAFPCVDEPEAKATFNLAVKYDEKDGETIISNEPEFKCENGIHYFKETVRMSTY LVAFVFGDMQKKLTKTKSGVEIGVFATKAHKANELDFALDIAKRSIEFYEDFYGTPYPLE HSYQVALPDFSAGAMENWGCVTYREAYLLVDPDNTSLDIKQLVATVIAHELAHQWFGDLV TMKWWDNLWLNESFANMMEYVAVDALEPSWKIWETFQTMETAAALRRDATDGVQSVHIMV NDPAEIDSIFDSAIVYAKGARLLVMVRALLGDDALRQGLKNYFAEYKYGNAQGQDLWEYL GQASGLNIGDIMDSWLEQPGYPVVRAGIEDGNLVLSQKQFFIGTGEDQGRLWQIPLNSNY LQVPKIMKDEKMIIGNYEELRAKNGVAFRLNVGNNSHFIVKYDQQLLDDILSEMDHLNNI DKLQLLQDLGLLAESQEISYADVLPLLVKEAESTSNIVNSKLYGTLAKIKIFATPDSAEE AAIKQFSKKLSESNAERLGVEPHAEESIDDNLTRPLILSASLYGDNPVIIAKLHELYLAN ADKLADLNSDIRYFVLLNEIKNFENKDLFNTLFEKYAKEVDQNYKRDICLALTSVKNPDL LQLLIDKFKDASVIKPQDLLRWVAGILRNNHGQQKAWDWMRQEWPWLDKTVGGDMSFTSY ISVVASTFDTPERLAEFKEFFDPKINVSGLTREIKMDTLVIENKVALIAKDKVAVNKAIK ALLG >gi|308165397|gb|AEHO01000020.1| GENE 55 52614 - 54545 1766 643 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0712 NR:ns ## KEGG: LGAS_0712 # Name: not_defined # Def: x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) # Organism: L.gasseri # Pathway: not_defined # 1 642 152 793 794 982 72.0 0 MAAKGYFTQFWGKNEFLFFNGKSLPVFDTSKVIREVVYVESDLDTDEDGQPDLLQTTIFR PDESNIIPVPALYTASPYFGGIIANEAKNHNVDENLEDATLSDYPKYVAKPHVFANKPSS DNNQATEEAIHKSSYALNEYLLARGFASVFAGAIGTRGSDGLRITGAPEETESAKAIIEW LHGDRIAYTDRNRTSEVKADWCNHKIGMTGRSYLGTLQIAIATTGVAGLKTVVSEAAISS WYDYYREHGLVVAPEACQGEDLDLLAETCQSNLWDAGNYLKLKDKYETMQQDLLKKSERN TGQYSDFWDARNYRHRADNIKCSWISVHGLNDWNVKPKNVYKIWQKVKNLSIQHHLFLHQ GPHYNMNNLISIDFTDLMNLWFCHELLNLQNNAYNQWPTVMIQDNLQADLWHQEKDWNNV DGQTSTYFLHQNGELQKAPDTQAKEQKFTDQGGKIFKQAKISEQQWQNEFIAGNERWLDQ QLRFTTDEFIHTTTITGRPTIKLSASCSKTTGQLSVALVEIGNRKRLTDTPSFFRDQNQE FGYRFGSQMLQEFTLTKATPAKLITKAHINMQNYADLKKASQIKENTMYDFEFQLQPTYY RIPAGSQLALIIYSTDQAMTKRPLESEEYKIDLTKCSISFQQK >gi|308165397|gb|AEHO01000020.1| GENE 56 54618 - 55898 1060 426 aa, chain - ## HITS:1 COG:lin2555 KEGG:ns NR:ns ## COG: lin2555 COG1508 # Protein_GI_number: 16801617 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Listeria innocua # 18 420 18 445 447 177 29.0 5e-44 MKYKNGLSLRFKESLITRLFLSPKLKQDLDILSYNTEDLLKVLHDIAEANPFIDLKYTNA NTTTLDWVQDPSQDSLVEYLMKQVQLSAWSNIDKKLVTFLIYKLDNNGYLRFTCKQLANE TEYSEADIKNAKNLLHELSPLGVGAYDLNECLLIQAKKLPHFNPIALAILEKHLLECLAD TSSWNSLPWKKEKILEALKELRKLEPTPGAKFDNFTNIQYLIPDLIFEIDNGHILVKDSK FNLPEVVFNEVEYTNLKGSCATNEVEYFNAQKKQFMDLQLSLERRQKTLIRLGEYLAKYQ LAYLKTMDKKQLKALNMNNVAQSLGLSVSTISRAVKDKYFECNNRIISLKIMFMKSFKNN ITAMKVTDTIERLINEEDKSHPLSDQDICNQLLLQGINISRRAVTKYRKKMNIQNSYWRK LNDCNK >gi|308165397|gb|AEHO01000020.1| GENE 57 55912 - 56562 665 216 aa, chain - ## HITS:1 COG:FN0215 KEGG:ns NR:ns ## COG: FN0215 COG1285 # Protein_GI_number: 19703560 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Fusobacterium nucleatum # 1 169 28 205 244 123 39.0 3e-28 MIAGVIGFDREHKNRPAGIKTHALVCAGACLIALLQKQIGFDALQLAILRPKLSGILRAD EARLIAQVVSGIGFLGAGTILVNHRVVLGLTTAASLWAVAGIGLSFGMGYYNIGLVGALF VILVLVFSKKIIRVNTIKKLEIKYKHKFETKEFIQKYFENKGIIVSDVNFKVTQDADKII YVNVYEIEIPRDLNYASIIEDISMNKNIMCIQMISI >gi|308165397|gb|AEHO01000020.1| GENE 58 56617 - 57444 768 275 aa, chain - ## HITS:1 COG:SPy1060 KEGG:ns NR:ns ## COG: SPy1060 COG3716 # Protein_GI_number: 15675052 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pyogenes M1 GAS # 1 263 1 263 275 286 54.0 3e-77 MRFTKNVTPEDRKMLNRIFLRSFTVFASRAGATKTHAPGFMYSIMPALDRYFKDNKAEHR AAMMRHTTWYNITQNVGTFVMGLVASMEKKKAENSKFDAESTVAIKTSLMGPLSGIGDSI FWGVLRVIAAGIGISLASQGSIFGPILFLLIYNIPSILTRYYLTYAGFTLGDTFIQDMYE SGSMKLLNKAASTLGLMMIGCMTATMVKFQTKLSIPIKGGKAILMQSYLDQLWKGLVPLA LTLLCYWLLSKKVNVNWILLGILVLSLVLGLVGVV >gi|308165397|gb|AEHO01000020.1| GENE 59 57441 - 58265 981 274 aa, chain - ## HITS:1 COG:SPy1059 KEGG:ns NR:ns ## COG: SPy1059 COG3715 # Protein_GI_number: 15675051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 7 274 1 263 263 243 53.0 2e-64 MLQIALLASLCVFICFGGNWLWGQTMIERPLVVGAVAGLVFGDLQTGILIGASLEAIFMG AVDIGGALSAEPVTATVLATTFAITLNVNMKAALALAVPIGVFAAFISMFLKNVVMNIFA PLVDKVAANDDSKGLTKLHFGMWFINYFVFSLVTFFSVLAGAQPVQHLVKQIPANLMAGL AATGGLLPAVGFAILLRMLWSKNLSPFYFLGFILAAYVNLPSVAIAAIGIIIVILQWNRD KQIMDLENKQKNINTTHIAETLDNKDQEEEEFFS >gi|308165397|gb|AEHO01000020.1| GENE 60 58281 - 58547 264 88 aa, chain - ## HITS:1 COG:SPy1058 KEGG:ns NR:ns ## COG: SPy1058 COG3444 # Protein_GI_number: 15675050 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 2 85 77 162 163 64 44.0 4e-11 MRIFALTNCVEDALEIAKHVSNIEGINVANVGRFANGQGKVTQLTSTLMLSDEEMVALKQ LSELDIPVFTQVVPSNARTSIASLLAEK >gi|308165397|gb|AEHO01000020.1| GENE 61 58601 - 58771 224 56 aa, chain - ## HITS:1 COG:SPy1058 KEGG:ns NR:ns ## COG: SPy1058 COG3444 # Protein_GI_number: 15675050 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 1 53 1 53 163 78 73.0 3e-15 MIAQLRVDDRLIHGQVALVWTKELDTPGIVVANDNAAKDAMVQMTLKMATPTGKNY >gi|308165397|gb|AEHO01000020.1| GENE 62 58788 - 59195 492 135 aa, chain - ## HITS:1 COG:SPy1057 KEGG:ns NR:ns ## COG: SPy1057 COG2893 # Protein_GI_number: 15675049 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pyogenes M1 GAS # 5 134 6 140 141 95 45.0 2e-20 MTDILIASHGHFASGLKNSIKILTGLDSHIQTIDAYVDERDYVADIKNFVKNAKKPAVIF TDLKGGSVNQKVMLEVASHDDIYVVTQMNLAIIISILLDSEPLNKDRLKELISQSQVELV EINSSDNDQSDDFFS >gi|308165397|gb|AEHO01000020.1| GENE 63 59328 - 61646 1542 772 aa, chain - ## HITS:1 COG:CAC0382_1 KEGG:ns NR:ns ## COG: CAC0382_1 COG1221 # Protein_GI_number: 15893673 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Clostridium acetobutylicum # 1 249 84 331 423 229 46.0 2e-59 MKHVIEQVSAAVAYPPNGLNILITGNSGVGKSFLAKKIYEYAKQIKIIKSNSPYFVLNCA DYANNPELVSSMLFGYVKGAYTGADASHTGLLLQANGGYLFLDEVHRLSSENQEKLFSFI DNGLFYQIGDNSHPIKSNVRLIMATTERPTDTLLITFLRRIPIHVTIPDFLKRSIDERLT LLRYIIHQEAVKLNKKIYVNNQVVSALVQTNNRGNIGYLKNLIQIACSIAYKKQYGLDQI DLSMDSLLIDKLPNFEDYGDLLIDGRSPFIFNEKNSLKNAKFTQLMTEFHKLTVDFSSDN VQKVKSSIRKINQLLENSCPKTGLYYRHQELFKKIIEQQFGLNKTSYLEPLMFLFYEAKF CIDNHDLEPLYHHINISFSRSLHVAVCFYKNMDIEDKVKQSLIIVLAMLLSDHVDENITI RGLMIAHGKNTATSIQTVVNSLCGNYLFDAIDMPINVGVSSIIQEANALIDTFNTTKGFI LMVDMGSLSQLYSEISSHINGDLLVVNNLTTITALDLALKMQQKMTFQEITNRVDQGYNI DTQYFEGVSQNINILVSCVSGLGIAEKISELFQTLMPDNIQIVPVDYSTLKYKIMNCDWN YFKQTILVLTTVDIDDKIPFDQMNIYDLLDATGERKLNKCLSQYLSQDKLKKLNQKLLRF FSKEGISEKLSFLNPDVILKEVEDVNSKYEDFYHLKLDGKIKLNLYLHIALMIERLIVHN TKDISIQAISNEEKDFFKITKSIFQPLEMKYNIHIPNYELSLLYELFRQFIK >gi|308165397|gb|AEHO01000020.1| GENE 64 61654 - 61911 178 85 aa, chain - ## HITS:1 COG:no KEGG:FI9785_531 NR:ns ## KEGG: FI9785_531 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 8 67 1 61 202 70 56.0 1e-11 MSKNGVYMDDAKDKVLTYLNHVSKSMTTIEIANSLNLSRSVISNYLNTLFKENRIKKISG RPIRWSKNCDDVSELTSSFLQFYRV >gi|308165397|gb|AEHO01000020.1| GENE 65 61918 - 64020 1769 700 aa, chain - ## HITS:1 COG:SP1673 KEGG:ns NR:ns ## COG: SP1673 COG0768 # Protein_GI_number: 15901508 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 16 699 8 677 680 392 34.0 1e-109 MKTYKRKNSLKSKIASTSLRLNIILGIICVLFLLLIGQLAYLQLIYGGRFQTEVQKTDKK IVCNNVPRGVMYDSKGRILVGNKANNAITYTKNSNLTTAKIYDISEKLSKYIRLNDETPT KNQLFDYYLANSKNALKINRQLPRNQRYDEHGDALDDHIVYQNTLKYLRSKKLVFSKRQK TAALIFNKISGAYTLSTIYIKNKHITGKELTLVGENLSELPGVGIGTDWSRDYPNGESIK SIIGSVSSEKAGLPNTNLQYYLSQGYSRNDRVGTSYLEEKYEPLLKGTKSKSQVISKHKS DSIDQTKTIYKGESGASLILTINSKYQKKVDKALKTVYNEAQRAGATRYSSGAYAVAMNP KTGALLAITGLMHNTKNNKIVDNALGVINQAYVMGSVVKGAMVSGGLLNNVITPANNTLP DVPIYLPATPVKKSVYPIGTFGALNAPTALEVSSNIYMMQLALRWLHAKYVPKSYISVPK NAFTILRRNFAMFGLGQKTGIDLPGESHGITGRSFDKNGNILSGSVLDLSYGNYDAYTPI QLVQYISTIANGGYRMKPYLVQSIGKTDPHNNKISILYNTKPKVQMCVPYKKDQLDVIKK GLYQVVHGTNGWGTGRFLKKEKPAIAGKTGTAETFFFDPEHPGNIHAPEVINATFVGYAP ADNPKIAVAVVFPGLNPNLEGTFTLQVAKAMFNNYFKMYK >gi|308165397|gb|AEHO01000020.1| GENE 66 64075 - 64560 760 161 aa, chain - ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 159 4 160 160 168 61.0 4e-42 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEVYTIVGSDESDPLSGK ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVTTSGK >gi|308165397|gb|AEHO01000020.1| GENE 67 64633 - 65628 944 331 aa, chain - ## HITS:1 COG:SPy0348 KEGG:ns NR:ns ## COG: SPy0348 COG1559 # Protein_GI_number: 15674503 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Streptococcus pyogenes M1 GAS # 2 322 175 511 524 234 39.0 2e-61 MLVATVFTIYALQPVDSQNRSHVVVHIPVGADNKEISKILEKKHLIRSSIVFNAWMKIKS VKGFQAGDFYISPSMNNNQIVNQLQGAGGRIVKNHLLVREGEQIDEIATAVASHTKYSKS SFINLMNNQEFLQELAHKYPKLLKSSMKSKNVRYHLEGYLFPAKYDVYQSMSLRELVDKM VAKTNETLKPYYTDIKKLKMTVHQVLTLASLIEREGVNKKDRRMIAGVFLNRLDAHMPLQ SDIAVMYALKKHKHRLSLKDIKVDSPYNLYVHKGFGPGPFNNPSLDSISAVLNPLERNRH YLYFVADLKTGKVYFNRKYVQHLNKNDSLGQ >gi|308165397|gb|AEHO01000020.1| GENE 68 65757 - 68171 2536 804 aa, chain - ## HITS:1 COG:SPy0769_2 KEGG:ns NR:ns ## COG: SPy0769_2 COG0072 # Protein_GI_number: 15674815 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 150 804 4 657 657 506 40.0 1e-143 MLVSYNWLKDFLDLDIEPNELAEKITRTGVEIADVIHPQSGLKKIVVGHVLTCDIVEGTH LHVTKVNVGEAEPLQIVCGAPNIAAGQKVIVALHGARIAGNEKIKRGKIRGIQSEGMICG LQEIGFDDKVVPAKYANGIFVFDEDTDVQPGDDIYEALGMDDYILDFDITPNRADTLSME GAAYEVGAIIDQTPKIEEISLKSDGKDWTNSLKVSVDPELATKFYLRKITGIKICSSPLW MQRRLWNAGIRPINNVVDVTNYVMLLTGQPLHVYDATTFSNGLLEVRRAHASETLQLLND KSVELDENDIVITDGNKPVMLAGVMGGKASEVTDQTTDIILESAIFNGSLVRKSALRHAN RTEASSRFEKGVNSDNTMKALDIAALLLRNNTDGTILNGIIKGIDKVAEPVNIRTTISYI NKTLGTNLEDHDIIKIFDRLNFPIKVNGDELVVNVPHRRWDISIAADLVEEVGRIYGYDN LISTQPLLAETHGGYSPTESIIRRIKKIIQGQGMLEAISYSLTTLEKATSYALNQKPTVK IAMPLNTSRSVMRQNLICGLLDAAAYNMARNQSNIGIYEQGRVYYKDDNNYIEHEHIAAL YSGNIYDDNWQHLDQNIDFYYVKGQLTNIFIELGLDLHDIVYKAENIKGMHPTRTAAIYL KNKYLGMIGMLSHEELYSEKALRGNEIYVYELDLDVLIPEISKGVTAKSAPKFPAINRDL SLLIDAHITNDAIISNIKANAGKYLTDIKVIDVYEGSQIEAGKKSIAYSLTFRNEKETLT DEVVSLAIAEITHNLESELGAVVR >gi|308165397|gb|AEHO01000020.1| GENE 69 68171 - 69220 1031 349 aa, chain - ## HITS:1 COG:BS_pheS KEGG:ns NR:ns ## COG: BS_pheS COG0016 # Protein_GI_number: 16079916 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Bacillus subtilis # 5 346 3 343 344 434 57.0 1e-122 MNLFEQLKSLQEIGLEKIRNSKDIQELEKVRVNIVGKKGQLTEILHSMKDVSKEERPKIG QQVNKLRDIFQKELEETKQSLLQVALNKRLEGEKIDVTLPGRRIIAGAKHPINIILDDLE AFFIGMGYQVVQGPEIETDHYCFEMMNLPKNHPARDMQETFYIDEENLLRTQTSGDQARV LEVHDFSKGPLKMVGPGKVYRRDDDDATHSHQFQQMEGLVVDKNVTMSDLKGTLELIAKH EFGADRKTRLRPSYFPFTEPSVEMDVSCFNCNGTGCGICKNTGWIEVLGAGMVHPNVLKN AGIDPEVYGGFAFGVGLDRFAILKYGVSDIRDFYTNDIRFLSQFRKEED >gi|308165397|gb|AEHO01000020.1| GENE 70 69513 - 69860 341 115 aa, chain - ## HITS:1 COG:lin1183 KEGG:ns NR:ns ## COG: lin1183 COG1733 # Protein_GI_number: 16800252 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 19 114 5 102 107 82 48.0 2e-16 MTDKSMEIAENAQPDPKDYSLCGHLINAFSIIGKKWNGLIINALCDTEAMRFRDLARCIS RCSDRVLVERLKELEQENIVQRQVDHGIISYSLTTKGKELKPVCEHVHNWADKWA >gi|308165397|gb|AEHO01000020.1| GENE 71 69933 - 70694 219 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 111 250 101 240 255 89 35 1e-16 MKEINSVNNSIIKQIRKLKQKKYRKDQMSYLIEGFHLVKEALDMEQKYEYVIGTQETINK LKLTNKIFDKSIILVNQAICDQLSDTENSQDIFMVLPINQPHSFSFKFGKWVILDNLTDP GNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIEQVLLDFKNN GLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLN AAVAAGIMIYYFS >gi|308165397|gb|AEHO01000020.1| GENE 72 70998 - 71159 66 53 aa, chain + ## HITS:1 COG:no KEGG:LJ1629 NR:ns ## KEGG: LJ1629 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: Protein export [PATH:ljo03060]; Bacterial secretion system [PATH:ljo03070] # 1 48 55 102 327 68 70.0 1e-10 MLHVSNLLGGTNGAGWAIIIITFVIQLIVLPLRLSSQSKMIKQQEKLKGYNRN >gi|308165397|gb|AEHO01000020.1| GENE 73 71201 - 71800 443 199 aa, chain + ## HITS:1 COG:L164312 KEGG:ns NR:ns ## COG: L164312 COG0706 # Protein_GI_number: 15672551 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 12 197 123 306 307 129 40.0 5e-30 MQLSQLQMKIYKDNNMSMIGGMGCLPLLIQLPIMIGIYQAVAYSKTLASSSFMGISLSKP SIVFAVVAAILYLIQGYLSLIGISEQQKQTMLITVIASPLMTLVFSIMYSGALGLYFLVG GIVIVIQQLIATFILMPKVRADVDKELTKHPIKEVINQAMIDQILNESSDQMNQNKSDEI TNLHEQLRKRNSGKQNRNK >gi|308165397|gb|AEHO01000020.1| GENE 74 71885 - 73426 1253 513 aa, chain - ## HITS:1 COG:lin1415 KEGG:ns NR:ns ## COG: lin1415 COG0642 # Protein_GI_number: 16800483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 13 505 9 482 483 279 37.0 8e-75 MNLIHHYNKKETRRSSLTLKWVAIVATTIMVSFVIFSLTIYSLIKSQSLEQESDVTKNVV RTFEQRLVNINEPFQVSNVVTTLSPNTLRLISGNSPNYNRKDNGVFDDDILATLTNKDIN IYIFDPQKNLVFSNSNWVSNEDLKSVNQKKASELIYKTRGGMHFRNAERIYSNDNRKLLG TLVVDNRMVQTNKLLKQLQQSMVFLSILAIIFFLVASYFIVDGIVKPIKRMTKISREIDQ DPNARERMPNIRRNDELGELVVNFNKMLDRIQNYILQQKQFVGDVSHELRTPVAVIQGHL NLLERWGKDDPQILEESIHASLQETDRMKHLIQEMLDLTRAEQVDIQFPDKVSDVNEVLI RTVNDMKMIHKDFTINLDIADLKPDTIIKMYRNHLEQLLIILIDNAIKYSTDRKEVNVSA STENKSVIIAVQDFGEGIDSVEQEKIFNRFYRVDKARTREKGGNGLGLSIAKKLTESYHG TIGVTSILGTGSTFRLKFPLLKKKSLTGSQATK >gi|308165397|gb|AEHO01000020.1| GENE 75 73404 - 74129 869 241 aa, chain - ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 231 1 226 226 263 66.0 2e-70 MSKILIIEDEKNLARFVELELQHEKYDTTVESNGRKGLDLALRDNYDAILLDLMLPDLNG LEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQ IEKRASGEAAGVQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTR EQLLKKIWGSDSKIETNVVEVYVRYLRNKIDVPGRSSYIKTVRGTGYMVRTDELDEFDTS L >gi|308165397|gb|AEHO01000020.1| GENE 76 74245 - 74772 532 175 aa, chain - ## HITS:1 COG:SPy0334 KEGG:ns NR:ns ## COG: SPy0334 COG1399 # Protein_GI_number: 15674493 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Streptococcus pyogenes M1 GAS # 37 175 34 178 178 75 31.0 4e-14 MLTYSFLNIENSKEPLVYVDQDVKFEADFFDRAKDFILDIKNVHIKGQFFYQDPFVTGNF EVEYDVIVPSTRSLKPVSIKNSFTFTENYAEMMPSEDEDAGTVILIENDIIDLQKAVEDN LLLNLPTINLTDAEKENGEFPEGEGWTVISEENYKNRPRNTINPQFDKLKNLFNK >gi|308165397|gb|AEHO01000020.1| GENE 77 74773 - 75933 1131 386 aa, chain - ## HITS:1 COG:SP1742 KEGG:ns NR:ns ## COG: SP1742 COG1323 # Protein_GI_number: 15901574 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 385 1 362 365 207 35.0 4e-53 MDAVGIIAEYNPFHSGHEFLLNQARLISQNKPIVVLMSGNYVQRGQISICDKWSRAKSAL LSGADLVFELPFSYAVQPADIFACGSMKILEQLGVSDLVFGVEDDQIDYMNLGGKISKLA QSSHIFKDYTQTYSTQYNQMLIEQIGYDLTQPNITLAVAYAVANCSLSRPLHLHAIKRFG SGGHNDKYIQDIVASATAIRRQILYELNGDFSKLENYLPKEELLWLSKQAVFPNWEMMFP FLKYRLESTNISHLQSIYQMSEGLEYKMKAEIHQSHNFEDFLHKIKSKRYTYARLRRLCL YTLLDITCDDIEEANQIITPMLLGYSLRGRKYLKKIRKSTNLPIISKVDKKNSEIGSLRL QVKVDRFFEQLIGYDQNFGRKPFEVR >gi|308165397|gb|AEHO01000020.1| GENE 78 76080 - 76286 228 68 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1401 NR:ns ## KEGG: LGAS_1401 # Name: not_defined # Def: iojap family protein # Organism: L.gasseri # Pathway: not_defined # 1 64 7 70 121 97 75.0 2e-19 MENTELLDLTLEAISERHGEETKAYDMRGISILADYYVITTAGSNRQLHAIANSIIEKVH EKVKMIIV >gi|308165397|gb|AEHO01000020.1| GENE 79 76298 - 77527 1119 409 aa, chain - ## HITS:1 COG:SPy0308 KEGG:ns NR:ns ## COG: SPy0308 COG1057 # Protein_GI_number: 15674475 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pyogenes M1 GAS # 22 205 24 207 210 174 45.0 3e-43 MSEVFLKTKPKVLLVRKNIEAKQIGIMGGTFNPIHNAHLLIADQVAKKLNLDEVWFVPDN IPPLKKVADKIDANDRRTMIELAIAGNPKFSVKSFELKRGGISYTVDSLKYLKKAYPQYR FYLIMGSDQVAQFSKWKEPNTIATLATLVGVNRANYSANTNYPMIWVDCPSFAISSTLIR QNIKTNNSIRYLVPEAVREYIKKRGCIVNNFKFEKTFSILTTEQLVEKVKSNMDERRFQH CIRVSEECKKLAKLNGYYDIYKAQVAGFIHDYAKQISVDRFIKIIKEHDFDPDLLNYNRA IWHGIVGSYFIQHELKINDDEILTAVRRHTTADVEMSLLDKIVFVADYIEPGRDFEGVEE ARKVAYDNLDEGVGYELAHTLAYLVKQRNKIYPKTVLAYNKWSVINSKE >gi|308165397|gb|AEHO01000020.1| GENE 80 77527 - 77943 486 138 aa, chain - ## HITS:1 COG:SPy0306 KEGG:ns NR:ns ## COG: SPy0306 COG1161 # Protein_GI_number: 15674473 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 1 138 229 372 372 122 45.0 2e-28 MASRLTGSELELVAPKKQLKPATYQLLPGQTIFLAGLGRIDFIKGPASGFTIYVARDLYL HRTKTINADEFYLKHKSDLLNPPCDSDDLGALKGQLYSTSEKSDILFGGVGFITVPSGVV IKAYTPEGIGLGIRRALI >gi|308165397|gb|AEHO01000020.1| GENE 81 78263 - 78637 331 124 aa, chain - ## HITS:1 COG:SP1749 KEGG:ns NR:ns ## COG: SP1749 COG1161 # Protein_GI_number: 15901581 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 4 124 2 120 368 145 54.0 3e-35 MCDEEIRCIGCGSILQDKDSKLSGYMPHSAFNKMIQEPDTSVYCQRCFRLRHYNEITPVN ENNDDFLRLLNSLGNKKALIVNVVDLFDFNNSLITSLDRFIGNNEFVLVGNKVDLFPKNS KESK >gi|308165397|gb|AEHO01000020.1| GENE 82 78642 - 79154 429 170 aa, chain - ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 160 25 182 194 145 44.0 2e-35 MIFRPTYTIDSIYNLDINALKNMGIKAIFSDLDNTLLAWNNFETDDALQKLERRLADADI KLIVISNNSSERISKVLDVYRIEFAARARKPLPIGINKAIAKYNLNKSDVLMVGDQLLTD IVAGNLAGVRTVLVKPLVETDKWNTRINRCVEKFIFLFLDLLIQLSLRSI >gi|308165397|gb|AEHO01000020.1| GENE 83 79273 - 81165 2149 630 aa, chain - ## HITS:1 COG:L185031_3 KEGG:ns NR:ns ## COG: L185031_3 COG1299 # Protein_GI_number: 15672941 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Lactococcus lactis # 293 628 2 350 351 292 45.0 2e-78 MKIEELLNPKLAILNLQANDKDSAIREMADMMADQGIVNNEEEFIKSIWDRENQTTTGIG DGIAMPHARNKNINKAAVLFAKSENGIDFKSLDGKPVHLFFMIAAPEGADNAHLQALAKL SSLLIDPEFVDELKKATSGEEVISLFKQKDAAITNEKNKKPKISSERPLIVGVTACINGI AHTYMAQEALIKAGEALGYNVHIETNGSEGVKNKLTAEDISRSEGVIIASDKKVEMARFD GKPLVSAPVVAGINKPQDLIKQIADHQASIYNAGGQTTKQADKAEISVGSTIYRNLMNGI SHMLPFVIGGGILIALSFIVEQYAGGAKSPLFVFLNTIGGMAFTFMVPVLSAYIAESIGD LPALMPGFVGGYMASNVINNAKSPAGFLGGLAAGFMAGYITLALRKVFSKIPKSLEGMKP MLLYPVLGLLLIAAIMYYIVSPIFSGLNFAITNFLNHMGTGNLIILTSILGGMMAIDMGG PFNKAAYVFASGAFANNPHDPVNAILMAAVMVGGMVPPFATAIGTVLFKNKYTESERRAG ISNWILGWSFITEGAIPFAAADPGRVIPSCVLGSAISGFIVGLTKVGIPAPHGGFWVAPL ATNILWYFIAVIVGSLVSGVVLSLWKKAVK >gi|308165397|gb|AEHO01000020.1| GENE 84 81193 - 82107 1057 304 aa, chain - ## HITS:1 COG:SP0876 KEGG:ns NR:ns ## COG: SP0876 COG1105 # Protein_GI_number: 15900759 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Streptococcus pneumoniae TIGR4 # 1 301 1 301 303 278 46.0 1e-74 MIYTVTVNPALDYVIQLEKFNNGDISRSNNCNFFAGGKGINVSQILNQINVENTAWGFVG GFTGKELVRQLNTKRIVSDFVKISDLTRVNVKIHAKSESEINASGPKIFPKEIEAFKMRL EDLTSEDIVVLSGSLAPSLPADFYKQLLPTIVEKGASFAVDTTGKALLETIPYKPLVIKP NHHELADLFDIKIESKEQLFECAKKLLDMGAQNVIVSMASEGGYLITSDHIYHGIPAVGK VVNSVGAGDSMLAGFVGTYTMTKDVIESFKVGMACGAATAFTEDIAIKEQIDAIYPQIGV ETII >gi|308165397|gb|AEHO01000020.1| GENE 85 82107 - 82598 431 163 aa, chain - ## HITS:1 COG:BH0826 KEGG:ns NR:ns ## COG: BH0826 COG1349 # Protein_GI_number: 15613389 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus halodurans # 3 147 90 233 251 121 43.0 7e-28 MHVRDGDNIFIDAGTTTYEMIQFLRYKKDLTVVTNGIDAAIACIELGIRTKILGGTIKKK THATIGTQTCQQLMQFNFNASFLGSNGLGSNGCYTTPDCAEADIKKQAVDCSKVTFILMD KSKIGIESFVNFAKVESVTLITDQLTEMDKKKIPKKTNIEEIN >gi|308165397|gb|AEHO01000020.1| GENE 86 82589 - 82858 248 89 aa, chain - ## HITS:1 COG:BS_fruR KEGG:ns NR:ns ## COG: BS_fruR COG1349 # Protein_GI_number: 16078502 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 1 75 1 77 251 65 41.0 3e-11 MLTQERHQIIVSHLKSRGICSVKELCSVTNSSQATIRRDLYELQQKGKLIRVRGGARSLN EFSSDVEQTIRFNLHVEEKSRLPKQLQCM >gi|308165397|gb|AEHO01000020.1| GENE 87 83002 - 83358 549 118 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526538|ref|ZP_03956587.1| ribosomal protein L20 [Lactobacillus jensenii JV-V16] # 1 118 1 118 118 216 92 5e-55 MPRTKGGTVTRKRRKKILKLAKGYRGAKHLQFKAASTQLFVSRKYAFRDRKKVKSEFRRL WIARINAAARQNGLSYSKLMHGLKVAGVDINRKMLADIAYNDEKTFAELAATAKNALN >gi|308165397|gb|AEHO01000020.1| GENE 88 83395 - 83595 313 66 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519517|ref|NP_965447.1| 50S ribosomal protein L35 [Lactobacillus johnsonii NCC 533] # 1 66 1 66 66 125 90 1e-27 MPKQKTHRASAKRFKKTASGELKRHQAYTGHRFHGKTKKQRRHLRKAAMVSASDLRRIRQ MLSQMR >gi|308165397|gb|AEHO01000020.1| GENE 89 83613 - 84128 394 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 1 161 1 163 166 156 47 5e-37 LNEEIRAREVRLIGEDGEQIGVVTKSEALQRATEADLDLVLISPNAKPPVARIMNYGKYR FEQQKKEKENRKNQKVTAVKEIRLSPTIEGNDFDTKLKHVRNFLAKGAKVRVSIRFRGRA ITHNELGKEVLEKMAEQAKDLSSVTASPTMEGRSMFLILSPLSDKDKKKSS >gi|308165397|gb|AEHO01000020.1| GENE 90 84321 - 85703 1333 460 aa, chain - ## HITS:1 COG:L0357 KEGG:ns NR:ns ## COG: L0357 COG0441 # Protein_GI_number: 15673893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Lactococcus lactis # 2 458 188 644 646 676 67.0 0 MNTGKLKHFKLLSVAGAYWQGKSSNPMLQRIFGTAFFKDADLKADLQRREDIKERDHRTI GRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVLMNLDAYKT SGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIAELGMMHRY EKSGALSGLQRVREMTLNDGHTFVELDQVQSEFAKILKLIMEVYRDFDITDYYFRLSYRD PKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGEAAFYGPKLDIQTKTALGNDETM STIQLDFMLPERFNLSYVGKDGEEHRPVMVHRGIVGTMERFIAYLTEIYKGAFPTWLAPL QVKIIPVNNDAHGEYAQNVKDQLMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVLGDD ELQHNSVNVRKYGSEDQESKALSEFVSELSADVASYSRNK >gi|308165397|gb|AEHO01000020.1| GENE 91 85714 - 86253 560 179 aa, chain - ## HITS:1 COG:SPy0517 KEGG:ns NR:ns ## COG: SPy0517 COG0441 # Protein_GI_number: 15674621 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 5 177 4 178 647 129 41.0 3e-30 MSLVITLPDGSKKEFNHALTIKEVASSIATSLAKSAVAGKVNDEIRPLDFVVDTDARVAI ITDKDEEGLQVLRNTAAFVFEMVASKQYPSVRLGTSELEEDGFFVDTDKEDQIKASELPD LEKEMQKIVKNGEKIEYKIVSKSELLDLFKDDPYKLELLKEEADEVAVYKLEDFVDFWL >gi|308165397|gb|AEHO01000020.1| GENE 92 86522 - 87253 539 243 aa, chain - ## HITS:1 COG:BS_dnaI KEGG:ns NR:ns ## COG: BS_dnaI COG1484 # Protein_GI_number: 16079950 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Bacillus subtilis # 4 242 69 309 311 177 40.0 1e-44 MYIYIQECEHPSKVNQGYEPYLFVNGNMIDFAYRATLQKRIDDRKKYVQNLIHLVDLPLS LKNVELSAVDKTPERIKALQEIGLFIQQYHVDKHAKGLYLEGDFGVGKTYMMAGLANGLA QEGNEVVFLHVPSFIAGLSDHFKDNSLTDKIMKIATATIVIFDDIGAESLTEWSRDEVLG VILQRRMDNQLPTFFTSNMNFDALTIHFAQVKNSYDDVKAKRLMERIRCLSKEVFVGGEN RRR >gi|308165397|gb|AEHO01000020.1| GENE 93 87437 - 87766 157 109 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1441 NR:ns ## KEGG: FI9785_1441 # Name: dnaB # Def: chromosome replication initiation / membrane attachment protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 109 339 446 446 85 42.0 9e-16 MENEYRLPSELINVLIKTCLDYTSVLTLNLADRIANNWLQNKIHTAQEAIAYTKKWQKNR QVRRFNNNSTRKQAKTDWKNYDVDNGKNTDVSLSNEELNNIFNNFGRKE >gi|308165397|gb|AEHO01000020.1| GENE 94 87796 - 88782 1135 328 aa, chain - ## HITS:1 COG:BS_dnaB KEGG:ns NR:ns ## COG: BS_dnaB COG3611 # Protein_GI_number: 16079951 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Bacillus subtilis # 7 165 10 166 472 70 30.0 6e-12 MYSCTNPKQPFYVANNVTITADGQKILSRLYQPLIGHLGMSIYITLANEFNSLPLSIDYK VLYQLQEQLDCGLKDIFDSIHKLEAVGLVKTYLGDNPRLGSIIIFKLSEITNAQEFFSTF LLSSLLQEKVGIVAFDNLVKDFTPSIFQGLNDAQDVSSGFFDVFKLTGDHAIEPTKEVMD AKKVIAADSNSKVDIKMGKMIQKIDWQFLEDLLLKYHIPANEVDSHRTEIAQLMTFYQLG EQDFTKLATMCLHAGDKKLDMKLIQRMAHNQLGQQKLVHTVEQQLSETKSEDSLIPDFDN DEKKLLDDVNSNQPLDYLYKIKEKKVDM >gi|308165397|gb|AEHO01000020.1| GENE 95 88786 - 89253 561 155 aa, chain - ## HITS:1 COG:BS_ytcG KEGG:ns NR:ns ## COG: BS_ytcG COG1327 # Protein_GI_number: 16079952 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus subtilis # 1 151 1 151 152 175 53.0 3e-44 MECPNCHENASKVIDSRPSDENRSIRRRRECENCGYRFTTFERVEQTPLLVIKNDGTREP FNREKILRGVMMAAQKRPISSQQLDTLVDHVDNAVRKQGISEISSKEIGEIVMDELANLD DVAYIRFASIYRQFTDVSGFMEAMTDMLKKQHGED >gi|308165397|gb|AEHO01000020.1| GENE 96 89328 - 89849 429 173 aa, chain - ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 167 1 168 197 131 46.0 8e-31 MTYFLGLTGGIATGKSTASNFFKKQGIPVIDSDLIAHQQLSKRDVIERLSQLFGNMILTS SGQIDRKKLGAIVFNDKNSLAKLNAELHPLICQQIKLKIAEYERIGCPFVVLDAPLLYEL KLDKVCNAVLVISLNFELQKKRLKERNNLSDLEAEKRIYSQLPLEIKKIMPIM >gi|308165397|gb|AEHO01000020.1| GENE 97 89846 - 90676 634 276 aa, chain - ## HITS:1 COG:lin1599 KEGG:ns NR:ns ## COG: lin1599 COG0266 # Protein_GI_number: 16800667 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Listeria innocua # 1 272 1 272 273 252 47.0 4e-67 MPEMPEVETVRRTLEPLIKGKIISNVTIWYDKIIVNDADFFQRKVVGQKILAIDRYGKYL LIRLTNNLTIVSHLRMEGKYHFLDSDAPKQKHEHVQFTFSDNTYLRYDDVRKFGRMQLIE TGTERRNTGIKNLGFEPNSEDFTLDFFLNKVKARKRAIKNVLLDQSIVCGLGNIYTDEVL WQSKIHPLSIANKIAQDSLVELFYDINNTIKIAIQYHGTTFHSFLDADGHTGKYQSMLKV YGKSGEPCSRCNTTLEKIKVNGRGTTFCPLCQVVYK >gi|308165397|gb|AEHO01000020.1| GENE 98 90689 - 91981 1010 430 aa, chain - ## HITS:1 COG:L0270_2 KEGG:ns NR:ns ## COG: L0270_2 COG0749 # Protein_GI_number: 15674124 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Lactococcus lactis # 1 430 120 548 548 513 60.0 1e-145 MATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKND LDVRITDLKNKIYQLAGEKFNINSPKQLGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEY QSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQTLTTTGRLSSVEPNLQNIP VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAM KIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQI KDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKI AMIKMQSELEQRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAAQLDVPLIADA NWGHNWYEVK >gi|308165397|gb|AEHO01000020.1| GENE 99 91999 - 93360 1128 453 aa, chain - ## HITS:1 COG:L0270_1 KEGG:ns NR:ns ## COG: L0270_1 COG0258 # Protein_GI_number: 15674124 # Func_class: L Replication, recombination and repair # Function: 5'-3' exonuclease (including N-terminal domain of PolI) # Organism: Lactococcus lactis # 10 327 6 329 329 346 55.0 5e-95 MLRETNSLKKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ PTHMLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEA DDILGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYG VTPKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYL IRDKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEE IDNKVQDECHYEILDKDNLSEIFATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKIYVC DDVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENN AGDLGVLANSYQEFYVQSDEIIYGREKSNIVWM >gi|308165397|gb|AEHO01000020.1| GENE 100 93390 - 94439 494 349 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|329920110|ref|ZP_08276941.1| ## NR: gi|329920110|ref|ZP_08276941.1| conserved domain protein [Lactobacillus iners SPIN 1401G] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 349 646 994 994 625 99.0 1e-177 MQKAIHNNSFDINCYQIFHSIINQQIKDESLLNQVFLFDIWKLKCDCSNIINILNFFETD LGRYINILNELENTRPQLLAKCRSKIINNLSRFNNKNICDYLRGKYLPLTGANIRCSVNY LVGYAHSHTTAVDYKDETVFKEPAIVLANCTFNDDYALLEMIVKILIATANPNCIDSQKN NSLFNRNLDRIVLIVLLNFHKFYISYKNQLLAWIDFLCLQIGLDKFIEKIFLNIKYLKNN DLNILFGNLKSIINNLDSNLISLQCLNNLTSLDDKEQVNIIIQFLIYAKASNIIPFSVDN SYILAHMLDLLNRYDYVAEMKNLYECFENIVPNHDYAFLGNKYHIRTKC >gi|308165397|gb|AEHO01000020.1| GENE 101 94420 - 95058 245 212 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653654|ref|ZP_07906574.1| ## NR: gi|315653654|ref|ZP_07906574.1| conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 210 440 649 868 383 99.0 1e-105 MEEYLCNILTQITRPDEIKNSDVKCLYLLQMLQNDKIFLNTEDYDLSEAFYSRFYRVLIN IDHCLNVDQYSFNELREHCIVKKLYTLLFNNKLRFCHSKAFPEFLFKSKLIRRLLINIDL IHDLSNTNLSNLIKYFDYNKQIQGSEVNIFVTKHIKQIQTDAKYINLSVAIRQKIQNGNY YLDGNMYFNNNKDLMRWTNIDTCARYIAKSNT >gi|308165397|gb|AEHO01000020.1| GENE 102 95205 - 96377 896 390 aa, chain - ## HITS:1 COG:no KEGG:SPCG_1088 NR:ns ## KEGG: SPCG_1088 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 23 383 7 367 1061 150 32.0 9e-35 MTALFVRKSDIMNKCNFNSKQFYNQLIDELIVSQKNNSLFFLIGAGVSNQQGYGDWNDYV RKLAEYWGLRNKRYADTLKYISSLAGLSNKRKIDFINQIIKKICNSDEQFKIRCLDFEKK HFGNHQLQINNDILSTLIKFSAIFFTTNYDYEVENAIGSNSIIKDYMELSETDELLPNFV VHLHGEPNGNVSNFINTSDKYLKLYANLDNLQHKLTMFYKKKKNPVLIIIGSGLQEDELL YSMCPDNEISVYALCKYDNCGNNDTISADLASIKEKFYLEKNIKIIWYGKEFSDLSVFCN QLYDDVQHKIMKRCGFITPDELISEAIASKDFSECYCLHKVIEQKNMDLLDAFFTNISND YFKKLLNDKVFIEQYIAKNYLSSVFFRKKF >gi|308165397|gb|AEHO01000020.1| GENE 103 96483 - 97142 729 219 aa, chain - ## HITS:1 COG:lin0987 KEGG:ns NR:ns ## COG: lin0987 COG4108 # Protein_GI_number: 16800056 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Listeria innocua # 1 219 304 522 522 301 64.0 6e-82 MNPNHRDRIAFIRIGSGEFQKGMDVTLARTNKVIRLNNATEFMSSSRVQVSEAVAGDIIG LYDTGNFQIGDSIYAGKKKIEYPELPQFTPEIFMRVTAKNVMKQKSFHKGMTQLVQEGAV QLYRGYATDDYILGAVGQLQFEVFAFRMKNEYNSEVELTSLGGRVARWINPEQLDPKMSS SRNLLVKDREGEPLFLFENAFAERWFKDKYPDVELTSKL >gi|308165397|gb|AEHO01000020.1| GENE 104 97268 - 98053 895 261 aa, chain - ## HITS:1 COG:L0369 KEGG:ns NR:ns ## COG: L0369 COG4108 # Protein_GI_number: 15672331 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Lactococcus lactis # 4 253 3 251 523 341 66.0 7e-94 MNKLTEKVNSRRTFAIISHPDAGKTTITEQMLLFGGIIRNAGTVKARKSGHYATSDWMEI EKKRGISVTSSVMQFEYDNKRINILDTPGHQDFSEDTYRTLMAVDAAVMVIDSAKGVEPQ TKKLFKVVKKRGIPIFTFMNKLDRDGRDPLDLTAELEDLLDIECVAMNWPIGMGKQLKGL YDLANKRVELYRHEDDSDRFLPLNEDGTLDNNIALSHDSLFESTLADIELLKEAGNNFDL DKILRGDQTPVFLDQLWLILA >gi|308165397|gb|AEHO01000020.1| GENE 105 98053 - 98928 959 291 aa, chain - ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 42 273 198 432 449 239 53.0 3e-63 MSTDPGAGDFFSKLRAKFQADEDIDADQELTLKLDEFYKAHAIDELEYSMIQGVINFKEK IAREVMVPRTDAFMVDKHDDFQKNLVEILREPYSRVPVYDGDKDKIVGVIHIRTVLRKAF ELGFDHLSYEDVMFDPLYAPETVELKDLLIEMQQTQRQLAILTDEYGGVVGLVTIEDLIE EIVGNIDDETDVAQVLFHKISENKYVISGKMTLDDFNEEFDTDLEMEDVDTIAGYVITKL GLIPGKGEKLSVKLDDGIILTTRRMRGSRLQTLLLTLPKTDTKNTKEDIED >gi|308165397|gb|AEHO01000020.1| GENE 106 99009 - 99482 479 157 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1367 NR:ns ## KEGG: LGAS_1367 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 10 157 1 148 153 172 68.0 3e-42 MMSRNEVLFMKKVRIYLVFVFLLLIPYLCSLALIGSCYNALVYHSANAWRSAVGAFIGAL IMFAIKATIQRPLDLVSENISSQLLKQIFRFFSIRRRKIFLIGNIALDFILCLLATIIIR HILPLSIIIDKVTGIILLIMLISTCIGAYIEYDNLSI >gi|308165397|gb|AEHO01000020.1| GENE 107 99486 - 99977 587 163 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1368 NR:ns ## KEGG: LGAS_1368 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 8 159 8 159 165 151 49.0 1e-35 MEIIQKQACTMIGKVFLPTDIDEQRSYSAAIQQVENDINFVNFLKENNLEHQRAALYVFA PDSFMYWYGVVVHQLPNELKGLRQFGLPSCKVANYITESQNLTHFLSPVNQTIPMFLDKL NKENVTYHENLGESDVPYILEELDLDTKKLTQSLYLDASDLSK >gi|308165397|gb|AEHO01000020.1| GENE 108 99997 - 100455 340 152 aa, chain - ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 6 139 126 259 264 67 31.0 1e-11 MQIGKEGPNSIRHKLLNKGVDNKLIENVLSSYDNIDWVDPGIRLVKSMSNKLGKLSTKAI IQKTKLKLMQHGFSSDQLDLVIEQLDLSNNSDEQLAALIKEGIKAYKKYAQEPDFKRNQK IRRYLFTHGFDSTEIDQFLDGQIIDFNSLEDY >gi|308165397|gb|AEHO01000020.1| GENE 109 100503 - 100811 304 102 aa, chain - ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 102 1 103 264 70 43.0 6e-13 MAIITNVSTQKQKKRYNIFLDGQYAFSVSENILIKKRLFKGTNLTDEQIAEIKQAELDQR TLNLAQDFLSYQMRTVNEVCIYLRQKGVSETAIKVAIADLKN >gi|308165397|gb|AEHO01000020.1| GENE 110 101371 - 102291 893 306 aa, chain + ## HITS:1 COG:SP1901 KEGG:ns NR:ns ## COG: SP1901 COG2265 # Protein_GI_number: 15901728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 303 133 433 436 238 43.0 2e-62 MYAPKSQKIIDLPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGIKTVVVRQSHA TDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIGKNYI TEQILNKKFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGTLGILASEK VKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKDGIAIDALIVDPPRT GLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYDVRLIQPVDMMPQTPRWEGIA KLVLRK >gi|308165397|gb|AEHO01000020.1| GENE 111 102537 - 103490 746 317 aa, chain - ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 13 315 16 305 308 263 46.0 3e-70 MRKKHRKKCYIWLITIITMFFTLYLGAGYYFYQVAFVPGHKSFLKKHKALSKSDPLYKEK LWYLNSKKQQYSIKSADNKFRLVANYLPASSKSFKTVVILHGYMGNKDKMGQYAALFHQL GYNVLLPDARSHGASQGHFIGYGWPERNDVKKWSQYIIKKQGSNSKIVIFGLSMGAATAM MTSGEKLPTQVKAIIEDCGYTSIEDELNYEANKLYKLPSMVEVPIVKLLSLSVKIKYGYF LSEGNCIKQLEKNHRPFLFIHGEKDKFVPMYMVYKNYRACRGPKELWVTKNAAHAESFPK HPKIYKNKIAQFLNKYV >gi|308165397|gb|AEHO01000020.1| GENE 112 103577 - 103870 288 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302191194|ref|ZP_07267448.1| ## NR: gi|302191194|ref|ZP_07267448.1| hypothetical protein LineA_04222 [Lactobacillus iners AB-1] hypothetical protein HMPREF9223_0623 [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF9223_0623 [Lactobacillus iners ATCC 55195] # 1 97 1 97 97 154 95.0 1e-36 MKLVNLLQLMQDVDSNYQIYFHEDTQQSNYPISKIIFSQNKCILTSLSINPRTIYQLLTI CRQIKHKNVNVYFAINNHEYSIFGMQIQPDKKQIILK >gi|308165397|gb|AEHO01000020.1| GENE 113 103911 - 104798 1022 295 aa, chain - ## HITS:1 COG:L177590 KEGG:ns NR:ns ## COG: L177590 COG1210 # Protein_GI_number: 15673321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 2 293 12 304 313 395 70.0 1e-110 MKVRKAVIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQFIVEEAKKSGIEDILIVTGKSK RPIEDHFDSNPELEAELKAKHKDSLLELTQSITRLGVNIYFTRQPHPAGLGDAIYRARSF VGNEPFVVMLGDDLMSDTVPLTQQLINCYNRTHASTIAVMKVPHEEVSKYGVIAPDDEIE PNLYNVKTFVEKPSLDEAPSDLAIIGRYLLTPEIFEILASQKPGRGGEIQLTDAIDTMNK TQRVFAHVFTGERHDVGNKEGYLETSIEYGLTHPETSEELKQYIIKLAAKLSKSK >gi|308165397|gb|AEHO01000020.1| GENE 114 104838 - 105758 670 306 aa, chain - ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 23 282 27 280 289 133 32.0 4e-31 MKKGSIKHSCSHFMLILTQIMTRGEIGQTSIIIAYYILFSIFPVIMIVGNMLPLLQINTS SIATYLNVIFPEQIAQFILPIVKSLLHQQSNGSISLGIIFALWSFSGLVNSIRIAMNKIY GVYEQEKTCPWWYYFVTRTLMLLLSIFMIYIFLLAIFVVAFGNQIMNFLGVTLNFSVEWL NQLLHYRWPLIILMTILFNTYINYTIPNISMKSRITFPGTIFTTICWCGLSYFFGLYLHE FGIRWENYGIIGTFIIFLMWLNLAAILFLIGVCLNATISYIKYGNAQYKLRPITDYLKSC TSKANR >gi|308165397|gb|AEHO01000020.1| GENE 115 105762 - 106547 1126 261 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 249 13 252 252 254 51.0 8e-68 MQKSGRLLASLFEELREVIKPGISTWEIEKFAQKYVKSHGGRLSEQGFEGYKYGTCISVN DEIAHATPRKDKILNEGDLVSVDVTCNVDGYETDSCTTYPVGKISAEDQRLLDVTKKAMY LGIDQAIVGNRIGDIGSVIQKYVEDDNHFGDVRELVGHGIQPTIHEDPEVPHFGKAGHGL RLREGMTITVEPMVEAGGDWRILQKTVEDPNDDWVYYATPDGSKAAQFEHTFAITADGPK ILTLQKPYDGFEKYLPHFDEE >gi|308165397|gb|AEHO01000020.1| GENE 116 106716 - 107162 566 148 aa, chain + ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 3 145 4 145 149 111 44.0 4e-25 MKAQIVFASMTGNNEDMAEILSEELTTLGFDVTNTDVSFADATSYLDADLCIMVTYTYGE GIFTDELDDFYEQLIQLDLSGKKFAVMGSGDKIYKEHYCENVDDFKKAFEKCGATQAANP VKIENAVDDHDVILIENAAKEMLAAFKK >gi|308165397|gb|AEHO01000020.1| GENE 117 107224 - 108366 1097 380 aa, chain - ## HITS:1 COG:lin2681 KEGG:ns NR:ns ## COG: lin2681 COG0381 # Protein_GI_number: 16801742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Listeria innocua # 1 379 1 377 379 488 63.0 1e-138 MKQIKVMTVFGTRPEAIKMAPLVLKLKADERFDEVTVVTAQHREMLDQVLEIFDIKPDYD FNIMHKNQTLGEITSKVMLDLSKVIQDEQPDIVLVHGDTTTSFAAGLATFYEQKKLGHVE AGLRTWNKYSPYPEEMNRQMTDDLTDLYFAPTSLSKQNLLKENHNSDNIYITGNTAIDAL KQTVQKDYHHEVLDKIKAGNKIILVTMHRRENQGEPMRRVFKVMKQVVDSHNDVEIIYPV HLSPRVQAVANEVLAGDPRIHLIAPLDVVDFHNLAKRSYFIMTDSGGVQEEAPSLGKPVL VLRDTTERPEGVAAGTLKLVGTDVDVVRKEMITLLENKQAYEKMANANNPYGDGCASDRI IEAIASYFEPNLYCKPSDFK >gi|308165397|gb|AEHO01000020.1| GENE 118 108479 - 108658 111 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259500499|ref|ZP_05743401.1| ## NR: gi|259500499|ref|ZP_05743401.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_04192 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0908 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0812 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0482 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0908 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0812 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0482 [Lactobacillus iners SPIN 1401G] # 1 59 1 59 59 63 100.0 6e-09 MIYLIYLTGILIVIASVCLVISMDKKKNANLRKKMLFVAIICQLLIFTFIFIMLNTAFK >gi|308165397|gb|AEHO01000020.1| GENE 119 108801 - 109541 616 246 aa, chain - ## HITS:1 COG:HI0422 KEGG:ns NR:ns ## COG: HI0422 COG0513 # Protein_GI_number: 16272370 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Haemophilus influenzae # 39 223 216 399 439 100 32.0 4e-21 MGQNLSSDAQIVLFGASESSITKNCETIFERSFFLIDVRSEQKLAVKHYFLQVSNEYKIQ FLQRLTKLDKFKGLIFFSSNESQMRFARIVAHTKMRFAILNNEMDKTVQKNILTSFQKGK VNLLFVTDLIARGLDLSEVTYVVNFEIPDDANTYLHRSGRTGRMNNAGYVVNLGDDHDFR KLKKMIAPVEVKQVYFKGYQLVTEKPLQKAKDKKVVSMSETKKKGKKKNRWKKQKNKGYH AKKQDK >gi|308165397|gb|AEHO01000020.1| GENE 120 109670 - 110035 521 121 aa, chain - ## HITS:1 COG:alr1223 KEGG:ns NR:ns ## COG: alr1223 COG0513 # Protein_GI_number: 17228718 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Nostoc sp. PCC 7120 # 24 116 26 120 513 73 42.0 8e-14 MFKWNVMYLKEIREVLNNEKKARPTLIQERTYDALKNGESIVGLAKTGTGKTLAYGLPIL ERAREIGGLAVILEPTSELAVQTKNVLLPYVKALGLKSIALVGAGNRNRQMEQLKKKNQV F >gi|308165397|gb|AEHO01000020.1| GENE 121 110091 - 110657 667 188 aa, chain - ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 11 185 5 179 179 177 51.0 9e-45 MANCDNISSIIDRKLFTEEDIKLMCKRLGKELTKEYAGKDLLVIGALKGAVFFLTDLVRE MDVPLQMDFMDVSSYGDSMESSGKVRLDVDVQTDVKGRDVLIVEDIVDTGHTMKYMKDLL ASRGANSVKCCALLNKTERRVDDVDVEYYGSIVENEFVVGYGLDLAGRYRNLPFVGVLKP EIIAKYTK >gi|308165397|gb|AEHO01000020.1| GENE 122 110750 - 112093 1231 447 aa, chain - ## HITS:1 COG:BS_yugS KEGG:ns NR:ns ## COG: BS_yugS COG1253 # Protein_GI_number: 16080182 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Bacillus subtilis # 10 438 11 431 434 241 32.0 2e-63 MSITSITANLIVIGIAFLIAIFFVVSEFALVQTRSSQLEDLIANKQGNIKKLHRALHMVK NLNEYLSTTQVGTTLVGVILGWVGQSTIEKGLTKLFGMANFFGGKTNAILGATVGVILLT YLEVVITEIVPKNVAIDMPVKCLMAIVNPLVMFHIIVYPFVWLLNHSADLFLKLMGLHTA GEEKEVYSQSEILRLSQKAVTGGSLDQDDLLYMERAFELNDKDAKDIMTDRTRVEVLDVK DNVKQALHMYLEEGYSRFPVVRDNDKDDVVGYVYSYDLVKQSIDDGDVPISRLIRAIITV PESMKIQDILKLLIKKHTPIVLVVDEYGGTSGIVTDKDIYEELFGSIKDEIDDVADEYIV KDETGIIRVSGKTTLYDFERYFHTKLKAFQDNDIITVGGYFMEQYPDLHAGEFVELEGFK FKLVAIEQGFMRWFEVEKIVKDTPINE >gi|308165397|gb|AEHO01000020.1| GENE 123 112139 - 112837 686 232 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0564 NR:ns ## KEGG: LGAS_0564 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 232 3 234 234 215 43.0 1e-54 MLDLLVSPAQWAYFDNWYNFISPTIFLAFGACFIFVGLLPISCIKNKITITLFIINVCLG LILAAVVYVHNQSAKEYFKESHYVSAMTRTYSFQLFSKRYYAYDDVDTLRYISDPSTPLA IKSVYKATQVKEPITYLGKDDGYVYIKMHNQKLKFGKDICRKVNGNVAYMTGYRFDMRSA GFSKIGFLKLPNYFRDKLEIPAKLWNTKAPQKVINNYDRPGLVGHWITDSCK >gi|308165397|gb|AEHO01000020.1| GENE 124 112841 - 113065 269 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500494|ref|ZP_05743396.1| ## NR: gi|259500494|ref|ZP_05743396.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_04167 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0914 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0818 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0488 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0914 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0818 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0488 [Lactobacillus iners SPIN 1401G] # 1 74 1 74 74 108 100.0 1e-22 MKQKGMLLGLVLMIIGIVCWLMVKYVLYDIKVLYPVGCIILCVGGLIVTINLFINTVKDD KILRSKIDQKKEKE >gi|308165397|gb|AEHO01000020.1| GENE 125 113205 - 113420 319 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653674|ref|ZP_07906594.1| ## NR: gi|315653674|ref|ZP_07906594.1| conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 71 2943 3013 3013 90 98.0 5e-17 MNNTSDLNNEVTESSTANKQKDLSATEKKTNSKITKRLPQTGEKENSVLGLLIIGLSGLL GIIDRKKRKDK Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:55:48 2011 Seq name: gi|308165363|gb|AEHO01000021.1| Lactobacillus iners LactinV 09V1-c contig00012, whole genome shotgun sequence Length of sequence - 29375 bp Number of predicted genes - 34, with homology - 34 Number of transcription units - 17, operones - 10 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.250 + CDS 70 - 1782 1915 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 2 1 Op 2 29/0.000 + CDS 1804 - 2307 615 ## COG0632 Holliday junction resolvasome, DNA-binding subunit + Term 2333 - 2381 0.6 + Prom 2325 - 2384 2.1 3 1 Op 3 1/0.250 + CDS 2404 - 3408 1064 ## COG2255 Holliday junction resolvasome, helicase subunit + Prom 3423 - 3482 4.3 4 2 Tu 1 . + CDS 3526 - 3825 334 ## COG1862 Preprotein translocase subunit YajC + Term 3839 - 3878 3.6 + Prom 3839 - 3898 7.4 5 3 Op 1 . + CDS 3930 - 5378 1623 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 6 3 Op 2 . + CDS 5379 - 6488 870 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 7 3 Op 3 . + CDS 6545 - 7501 709 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 8 4 Tu 1 . + CDS 7602 - 8744 1011 ## COG0513 Superfamily II DNA and RNA helicases + Prom 8930 - 8989 6.4 9 5 Op 1 4/0.000 + CDS 9088 - 11721 3173 ## COG0013 Alanyl-tRNA synthetase 10 5 Op 2 6/0.000 + CDS 11801 - 12058 361 ## COG4472 Uncharacterized protein conserved in bacteria 11 5 Op 3 7/0.000 + CDS 12058 - 12489 495 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 12 5 Op 4 . + CDS 12496 - 12807 367 ## COG3906 Uncharacterized protein conserved in bacteria + Term 12818 - 12846 -0.9 + Prom 12820 - 12879 3.6 13 6 Op 1 3/0.000 + CDS 12915 - 15275 2736 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 15283 - 15342 2.1 14 6 Op 2 . + CDS 15372 - 15683 487 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 15721 - 15769 7.1 - Term 15709 - 15757 0.3 15 7 Tu 1 . - CDS 15810 - 16208 442 ## LGAS_0428 hydrocarbon binding protein - Prom 16232 - 16291 10.1 + Prom 16196 - 16255 7.0 16 8 Op 1 3/0.000 + CDS 16304 - 17089 1004 ## COG0796 Glutamate racemase 17 8 Op 2 . + CDS 17106 - 17726 416 ## PROTEIN SUPPORTED gi|24114209|ref|NP_708719.1| putative deoxyribonucleotide triphosphate pyrophosphatase + Term 17843 - 17887 -0.9 18 9 Tu 1 . - CDS 17752 - 18597 770 ## COG0668 Small-conductance mechanosensitive channel - Prom 18623 - 18682 8.3 + Prom 18634 - 18693 8.3 19 10 Op 1 . + CDS 18722 - 19159 493 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 20 10 Op 2 . + CDS 19174 - 19503 501 ## FI9785_505 hypothetical protein + Term 19506 - 19559 12.4 - Term 19500 - 19541 -0.8 21 11 Tu 1 . - CDS 19560 - 20666 1490 ## COG0006 Xaa-Pro aminopeptidase - Prom 20707 - 20766 4.2 + Prom 20611 - 20670 8.2 22 12 Tu 1 . + CDS 20815 - 21816 1080 ## COG1609 Transcriptional regulators + Term 21817 - 21861 12.1 - Term 21804 - 21848 12.1 23 13 Op 1 . - CDS 21896 - 23293 1552 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 24 13 Op 2 . - CDS 23308 - 24270 650 ## LJ0494 hypothetical protein 25 13 Op 3 . - CDS 24255 - 24674 241 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 24770 - 24829 9.3 + Prom 24699 - 24758 6.8 26 14 Op 1 . + CDS 24782 - 25114 502 ## LCRIS_00432 hypothetical protein 27 14 Op 2 . + CDS 25118 - 25285 102 ## gi|259501287|ref|ZP_05744189.1| transcriptional regulator 28 14 Op 3 1/0.250 + CDS 25212 - 25661 313 ## COG4470 Uncharacterized protein conserved in bacteria 29 14 Op 4 . + CDS 25664 - 26260 711 ## COG0647 Predicted sugar phosphatases of the HAD superfamily + Prom 26262 - 26321 3.5 30 15 Op 1 . + CDS 26441 - 26791 225 ## LA2_02330 hypothetical protein 31 15 Op 2 . + CDS 26857 - 27048 169 ## LA2_02330 hypothetical protein + Prom 27053 - 27112 4.3 32 16 Tu 1 . + CDS 27151 - 27465 283 ## gi|309805299|ref|ZP_07699350.1| hypothetical protein HMPREF9213_0640 + Term 27521 - 27584 5.1 - Term 27509 - 27570 8.5 33 17 Op 1 . - CDS 27595 - 28239 546 ## COG0586 Uncharacterized membrane-associated protein 34 17 Op 2 . - CDS 28267 - 29214 716 ## COG0492 Thioredoxin reductase - Prom 29300 - 29359 6.6 Predicted protein(s) >gi|308165363|gb|AEHO01000021.1| GENE 1 70 - 1782 1915 570 aa, chain + ## HITS:1 COG:BH2368 KEGG:ns NR:ns ## COG: BH2368 COG0323 # Protein_GI_number: 15614931 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Bacillus halodurans # 2 570 57 635 637 349 36.0 8e-96 MVQDNGSGIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT GDVNGIHAIFEDSNKVKQEAIASPQGTKIVVKDLFYNTPARLKYLKSERTEIMKIVDIVN RLALGYPQVSFELTNRQKQLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGL ISRADDTRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVD VNVHPTKQEVRLSKESELARLIVRTIDQVLGATEHEIASLDNATESKQTKLDQLEFNLNE AVVDTSRIPVEFSMPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDENVQAQTAL SPFSASQLSSEVTTSSEQILVNRLPQLQCLGQMHEYLLATADNDLYIVDQVAADNRLAFD KLLLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYP LWLENCDQIQIKAVIDLILAHINAPLDKIRIELAKKIVATKHIRRKSLNSLEMVEMLTSL SNSSNPYHDPFGKIIIAKISENDLRKLFQK >gi|308165363|gb|AEHO01000021.1| GENE 2 1804 - 2307 615 167 aa, chain + ## HITS:1 COG:L0266 KEGG:ns NR:ns ## COG: L0266 COG0632 # Protein_GI_number: 15674189 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Lactococcus lactis # 1 167 1 171 197 160 53.0 1e-39 MFEYLQGKVTIINPAYIVLDVVGVGYKLYTPNPYQFIENKQYCIFVEQVVRENAITLYGF ATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKVASQ IILDLKGKLDVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK >gi|308165363|gb|AEHO01000021.1| GENE 3 2404 - 3408 1064 334 aa, chain + ## HITS:1 COG:SPy0038 KEGG:ns NR:ns ## COG: SPy0038 COG2255 # Protein_GI_number: 15674280 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pyogenes M1 GAS # 15 328 13 326 332 411 64.0 1e-115 MTKDNLFSSESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR >gi|308165363|gb|AEHO01000021.1| GENE 4 3526 - 3825 334 99 aa, chain + ## HITS:1 COG:BS_yrbF KEGG:ns NR:ns ## COG: BS_yrbF COG1862 # Protein_GI_number: 16079823 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Bacillus subtilis # 2 75 12 85 89 69 41.0 1e-12 MVVIMFGFMYFAMIRPQKKQQQVRMKMLSELKKGDKVILLDGMHCKIDTINGDDTIVVDA DGIFLTFSRSAIRQILPDDVEANKPVATNENVETKDEEK >gi|308165363|gb|AEHO01000021.1| GENE 5 3930 - 5378 1623 482 aa, chain + ## HITS:1 COG:SP1243 KEGG:ns NR:ns ## COG: SP1243 COG0364 # Protein_GI_number: 15901104 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 7 482 6 483 495 422 43.0 1e-118 MKNIPNVMIIFGGSGDLAHRKLYPALFNLYRKGLIADNFAVIATARRPWSHDFLRGQVKN AVNETCEQIDAADLDRFATHFYYQSHDVTHVDHYIALKQLAQKLDEKYDCHGNRIFYMAM APSFFGTIATHINDQKLLGTGFNRLIVEKPFGRDYETAEKLNQEIGASFDEKSVYRIDHY LGKEMIQNILPLRFANPLLKNIWNAEYIKNIQVTLAEKIGVGTRGGYYDNSGALRDMVQN HIFQIITLLAMPAPKNLTSDAIHEAKQRLLQGLQIPSYDEVSKSVVRGQYLASEHEPAYI NVDQVAPDSCTETYVAGKVKFTTGPLAGVPIYFRTGKKMREKKSRIDIVLKAGSDLYEKA NENVITIEIDPVSKIVLRLNGKEIVGTGLRIEDLSYAFNAEEMHQVPDGYERLLNDVFMA DRTNFTHWMELAQYWRYIDAIESAWRKQNSMAIKPDQYLPNAFGPNAADNIFENADSYWI YR >gi|308165363|gb|AEHO01000021.1| GENE 6 5379 - 6488 870 369 aa, chain + ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 8 368 8 364 364 291 44.0 2e-78 MDELLPCNNFSRKIIHLDMDAFYASVEIHDDPTIANKAVIIGQDPRQSNGHGVVATANYL ARKYGVHSAMTTMQALRLVPAEKLVFIKPNFEKYRRVSDKIHQLMYEITDAIESVALDEA YMDVTTNKMGNFSALELATNLQKNIYRETGLTSSFGVSYNKYLAKMGSEYAKPFGRTVIL PDDALEFIASQKIEKFPGIGVKMQEQLHELQIYTGADLQKQNIKFLLDRFNKAGYIIAQQ AKGIDLRPVISKRPRKSLGLEHTFDVNIYDYDKLLTWLRNYSCELAQKLRTLNLQTRTVV IKLRTADFITITRRSALAVATNDAMTIYQHAKSSLEDEIDCVSGGVRLLGLSATDFEQKS YETLSLDLF >gi|308165363|gb|AEHO01000021.1| GENE 7 6545 - 7501 709 318 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 1 310 1 310 311 277 46 5e-74 MNTFDEIFKKINDYSTIIIHRHQHPDPDALGSQAGLARSLKLAFPEKKILCAGGPEGDLV WINKMDEVKDEDYQGALVITVDTANTPRISDDRFRMGDFLIKMDHHPDVDPYGDLRYVEP EKPAAAEIIFDFIKAEKLPLTKEVAYPIYAGMVGDTGRFMYAETTPATLKAAYELAATGI DITEIAMNISTVTLEQAKLQNSVIDLLHVDPCGAAYAVVTQQQLHKLGINEDQASATIGT PGRIKGIIAWNIFVEKSDGTYRVHYRSKGPIINQLAEQHNGGGHALASGANAVDMKEVEQ IFAEVVEVTKKYNENANE >gi|308165363|gb|AEHO01000021.1| GENE 8 7602 - 8744 1011 380 aa, chain + ## HITS:1 COG:lin1488 KEGG:ns NR:ns ## COG: lin1488 COG0513 # Protein_GI_number: 16800556 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 4 380 43 418 435 346 48.0 4e-95 MAHQNVVVQAVTGSGKTHAYLIPIINDLDPELLCTQAVITAPSRELASQLYKVARQLRDA AELNISIEYLGGGNDRTRQLEKASNNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEA DMTLDMGFLNQMDDIMVRLGTNVTIGAFSATIPVKLEQFLNKYMEHPEFVVIDNPSVISP TVANDLIDVGSKNKKDILYTLLTMGQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGG ITERERKRTIRQVREGQYQYVIASDLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGR NNLYGHAITLIHEEEMQQIAQLEKLGIHFEFKDLKNNELVERTHYHRRDNRRTRAQKLDN RLVGMVKKAKVKKKPGYKKK >gi|308165363|gb|AEHO01000021.1| GENE 9 9088 - 11721 3173 877 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 873 1 870 879 944 56.0 0 MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN HRITSSQKSIRTNDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGL DPDKLYVTVYPKDIDAYRLWHEVVGLPESHIVQLEDNFWDIGEGPCGPDSEIFYDRGQEN NDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVSVIQ DAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALPSNS GRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIKNEE DRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGLAVD KEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDESVFEYHQLQEDHAKLLDIVVDD KLVDQVNGEQATLIFDKTPFYAERGGQVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFV ELVLPMQKGEEYVLKVDEQRRRGLKHNHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRF DFTSLEPMTKREIATVERLVNEKIWAEIPVKTTITDQETGLKMGALALFGEKYHEKVRVV QINDFSIEFCGGTHCENTDQIGMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKE IQDEVKATKVDDIQNKVVALEDALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIA KIVDVDGMNDLRELSDNWKNQNLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKI AAPIFGGGGGGRPNMAQAGGKNPAGLAKALETVLNEL >gi|308165363|gb|AEHO01000021.1| GENE 10 11801 - 12058 361 85 aa, chain + ## HITS:1 COG:BH1268 KEGG:ns NR:ns ## COG: BH1268 COG4472 # Protein_GI_number: 15613831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 85 1 86 90 105 67.0 1e-23 MSSLDKTMHFDFNQNKGKNVYDTLQDVYVALEEKGYSPINQIVGYLLSGDPAYIPRHNDA RNLILKHERDEIIEELVKSYLGKDK >gi|308165363|gb|AEHO01000021.1| GENE 11 12058 - 12489 495 143 aa, chain + ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 136 1 135 139 154 57.0 4e-38 MRLLGLDVGSKTVGVAVSDALGITAQEVETIPIDESKYNFGMRRVKQLVREYEVSGFVVG LPKNMDGTCGESAQRCLDYGERLKAKFKIPVYYSDERLTTIQAKRILVEEAGISDRVARK KIIDQMAAVLILQNFLEAKRKDN >gi|308165363|gb|AEHO01000021.1| GENE 12 12496 - 12807 367 103 aa, chain + ## HITS:1 COG:BS_yrzB KEGG:ns NR:ns ## COG: BS_yrzB COG3906 # Protein_GI_number: 16079792 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 11 98 5 90 93 73 52.0 1e-13 MGEKISNKNTENQITLIDDKGNEELFEILFTFTSDDYNKSYVLLYPAAVGEDEEVEVQAF SYDADEDGAVLGSNLHEITSDEEWDMVQGVLNTFLSDERLSGE >gi|308165363|gb|AEHO01000021.1| GENE 13 12915 - 15275 2736 786 aa, chain + ## HITS:1 COG:BH3106 KEGG:ns NR:ns ## COG: BH3106 COG1193 # Protein_GI_number: 15615668 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 4 786 3 785 785 575 40.0 1e-163 MNSKIIEKLEFKRITQMLSDLAVTEPAKKLAQELLPVSDYQTVLNNMAQTTALVNIQRVK GPLPLTDFVDVNASIKRLHINADLNAQELGNILLILSIVRDCKNFLSAIQDRELDLHAID DLIDSLLPLDDLFNALNRSLESDGTVLDTASAELNRIRHNLKANELDIKTKMEAYLKNSS EYLTESIITIRDGRYVIPVKQTYKNKFGGVVHDQSASGQTMFVEPEAVLSINNRQQQLVY EEKREIHKILKQLSLMAQEYIDEIAADARTLISLDFLSAKSLLAKKLKATEPIFTENNEV DLHGARHPLLDPKKVVTNDIELGKNFDTMLITGPNTGGKTIILKTVGILQLMAQSGLYIT AHEGSKVGIFREIYADIGDEQSIDQSLSTFSSHMDQIIKIMANVNQDDLVLLDELGAGTD PEEGACLAIAILDYMQARLPKIMITTHYPELKLYGYNRLRTSNASMEFDVKKMHPTYKLR IGIPGQSNAFAIAEQLGMDNTVIIAGRSLMSEQNNDINKMILRLNQQTKDAEELTNQVHK KLKLCIALKNKLQAGLDWYNQQVDHQMQLTMAKVDKIVSDKRDEAEKIIKQLKQQQHDNG QFKINKVIEAKNAFNAIENETQQLAHNKILKKAKKKHDIQPGDAVKVSSYGQTGVVTKKI SDNQFEVQIGIIKVKVSGADLDKIVSKKAKTKEMVVRSGRGIRTTQAKAELDLRGKRYED AMVELDRYIDSVLLNGLTVVTIIHGVGTGAIRLGVGKYLRQSKHVQSFAYAPANEGGTGA TIVHLK >gi|308165363|gb|AEHO01000021.1| GENE 14 15372 - 15683 487 103 aa, chain + ## HITS:1 COG:lin1196 KEGG:ns NR:ns ## COG: lin1196 COG0526 # Protein_GI_number: 16800265 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 102 1 103 103 118 54.0 3e-27 MFEELTDKTYEVETSEGLVVIDFWAPWCGPCRMQSPVIDELSEEMQDVKFAKVDIDQNPD TPKALGIMAIPTILIKKDGKLVNRFTGFTPKEKLKAAIEEYID >gi|308165363|gb|AEHO01000021.1| GENE 15 15810 - 16208 442 132 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0428 NR:ns ## KEGG: LGAS_0428 # Name: not_defined # Def: hydrocarbon binding protein # Organism: L.gasseri # Pathway: not_defined # 1 132 1 131 131 156 61.0 2e-37 MQDNSEQLYFINSLYRDCILSEILGKDASDILYWAGKRVSRRYDLSDIDDLPEFFRIAQF GQLKLISNRRKTVVFELSGQNVTDRIESSITEFTIESGIIAECIARENKTNAEAVANIDS KRKVVEIVVQYD >gi|308165363|gb|AEHO01000021.1| GENE 16 16304 - 17089 1004 261 aa, chain + ## HITS:1 COG:L0120 KEGG:ns NR:ns ## COG: L0120 COG0796 # Protein_GI_number: 15673264 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Lactococcus lactis # 1 261 1 263 271 210 41.0 2e-54 MDNRPIGILDSGLGGLTVLKKVIQRLPNESTIFIGDQAHMPYGDRTVEDIINLTRASVKF LLTKNVKVIIFGCNTATAAAMSVIQQEIPMQIIGVIQSGALAASKITQTNQVAVIATNAT VNSHSYVKEIAFRNAQIQVTELGEPKLAPLVEANPSDEIKKAVVAQCLAPLKHVQYDTLI LGCTHYPLLIREIAEFIGKDKKIVDPADQVAQYTFNVLKRDNLLAAKGGKHEYYTTGDPI KFMKIAQKWMHDPTLKAQHVE >gi|308165363|gb|AEHO01000021.1| GENE 17 17106 - 17726 416 206 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|24114209|ref|NP_708719.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Shigella flexneri 2a str. 301] # 1 197 1 194 197 164 48 5e-40 MDTLLFATTNLNKAKEVEKALALANFPLKVITNRDLENVPEVIETGTTFLQNATLKAHKL AQFSQLPTLADDSGLMVDKLNGAPGVYSARYSGEDHNDARNNAKLLAELGGVPEQQRTAV FHTTMVLSWPDRYDCDLVSQGEILGRILTMPKGEGNFGYDPLFYVAEKGKTFAEMTVEEK NKISHRGIALRKLLAELPMWWKKMSK >gi|308165363|gb|AEHO01000021.1| GENE 18 17752 - 18597 770 281 aa, chain - ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 19 273 6 262 281 147 36.0 2e-35 MYILNNLLTPFKIQPTQAHLLDWSQLAHESVGKFLTIAFTSLIYLAIWTIGKKFINKYLI HNPHFQQKVSSRKKTFSQLLVNIFQYTLLFFYIYGILNILGLPVGTLIASAGVVSLALGM GAQGFVSDLVNGITILSESQYDVGDLVKISGFTGTVISLGIRITKLRASDGTIIYIPNRS ISIVENLTRGGIGVDISLHLDANNDFAIITKSINDANEILRPKFSRKLKKDPSILGIVSQ YKNGFTYNIHFQVLPGYQVEIKNAYFSEYIKQLQANKVIFN >gi|308165363|gb|AEHO01000021.1| GENE 19 18722 - 19159 493 145 aa, chain + ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 3 140 1 134 135 63 35.0 9e-11 MVMSYSEIAILLIAVAIIVLVVFMIPCLVKLYKLMKSLIQVSDNLNTTISDLNSKTSLLL TQTEDLLKTSNELMADVNDKVKRLDPLVQAIDDVSESISDINNSSKKAMSNISKFSAKKV GLGIVSSILSHIIVKKHEKNNKKHF >gi|308165363|gb|AEHO01000021.1| GENE 20 19174 - 19503 501 109 aa, chain + ## HITS:1 COG:no KEGG:FI9785_505 NR:ns ## KEGG: FI9785_505 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 109 1 108 111 70 41.0 3e-11 MGKKGSFLVGGILGFGLGILASAFLPDDVSSNIKGKITDNDMFKTLKEKYDQRTEDLKEQ MTEIPSNINDDSELKDFDDIIIDNTQSSSEKVDDNQHISDDILDLKNEE >gi|308165363|gb|AEHO01000021.1| GENE 21 19560 - 20666 1490 368 aa, chain - ## HITS:1 COG:L96847 KEGG:ns NR:ns ## COG: L96847 COG0006 # Protein_GI_number: 15673631 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Lactococcus lactis # 3 361 4 359 362 351 48.0 1e-96 MNLDKLNEWLIKNNCDVAYISDPLSINYFTGFNMDPNERIFALVAFKDKPAFIFAPELNV EEAKHSAWNGDVYGYLDEQNPWQKIANLVSERIGRPQKIAIEKSFVSIARLEALKSVFTD ADFSTDVSKLIGELRIIKTEEEVKQLQAAGAEADYAFEVGFNALRNGVTERYVAGQIEYR LKLDKGVMHTSFETICQAGTNAANPHLGPTLNTIKPNQLVLFDLGTMHNGYASDSSRTVA YGEPSAKEKEIYEIDREAQQAAIDAARPGMTAGELDAVARDIITKAGYGEYFIHRLGHGI GMSVHELPQIMSGNDFILQEGMCFSIEPGIYIPNVGGVRIEDCGVLTNEGFKTFTKTDKQ LRYIPVKE >gi|308165363|gb|AEHO01000021.1| GENE 22 20815 - 21816 1080 333 aa, chain + ## HITS:1 COG:lin1640 KEGG:ns NR:ns ## COG: lin1640 COG1609 # Protein_GI_number: 16800708 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 5 333 2 334 335 289 48.0 7e-78 MQKQDVTIYDVAREANVSMATVSRVVNGNTNVRKETRDKVLAVIDRLHYQPNAVAQGLAS KKTTTVGVVVPGLTNLHFAELAKGIDDIATMYKYNIILTSIENNVIDNGNVIQSILNKQV DGVIYMCNTMSPKATEAFHRANIPVVLAGTIIDNDHFGSVAIDYKEADRKALELLWKDGK ENIALIVDDKEAYINRGCRIKSYRQFLADHGIKSEYIYDNILTFEDGYNLFAKLYSDGID AVVTTKDITAAGIVNAALDSQVSIPEQFEIISATSTNIAKIVRPQLTSIQQPLYDIGAVA MRMLTKLMKNEDVAEKNIVLPYQILKHNTTLNK >gi|308165363|gb|AEHO01000021.1| GENE 23 21896 - 23293 1552 465 aa, chain - ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 3 465 4 469 469 427 48.0 1e-119 MDLDYKKLALEKKDAILADLKELIAIDSSEDLTNTSEEYPVGPGPVTALKKFLSFAQRDG FDTQNFANYAGRINYGNGDSRVGIIGHMDVVPAGDGWKTNPFEMVIKDGKIFGRGSADDK GPSLACYYGLLILKEHGFVPSKKIDFVLGTNEETNWVGIDYYLKHEPKPDMVFSPDAEFP IINGEQGIVTLKLTFKEENRKGTNFLISFESGIAANVIPQTAKATIKDNSSIDFETEYQQ FLTENELTGEIEHQNGVINFTLTGHGAHASAPETGRNAATYLAKFLVKYDFAGKADNYLS FLASVEHNDFHGEKLGIYHQDDLMGELASSPSIFKYNENEAYLLNNVRYPQGTNPEIMVN NINERYGNFISTTVKGKAEEPHYVPGDDPIVQTLLKVYEKQTGLKGHEVVIGGGTYGRLF EHGVAFGAQPEGAPLVMHQPNEYMKVEDLINSIAIYAEAIYELCK >gi|308165363|gb|AEHO01000021.1| GENE 24 23308 - 24270 650 320 aa, chain - ## HITS:1 COG:no KEGG:LJ0494 NR:ns ## KEGG: LJ0494 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 317 136 455 460 340 55.0 5e-92 MEQILANVIKKYHMENRVMFHSFSAPSLETLSKLLPKIPRIFIVGSLKRINFEVLSYVNG INISADLITQNPDLIRQLHKLHKKVYVWAEMDESPKLWNWLINNDIDAVVTNFPATAYRY NMAKKNTHKFSINKDAIFYSRTSERVFENPYFKTKTNKKIHFSQNIHVSNAVETNSGTYY QIGAKQFIDADFVNFNLPVNCIYPYWNLPIITKYNQMTNTYVHPKYTANVEKFLKPNTKY KIYGISKNQKWLLTTSGWVPAKEILYYGIFPNTAEFRYYQKLPHNYQQINLALVPDVAFN RQYVVNFWKQCKILNNIKDF >gi|308165363|gb|AEHO01000021.1| GENE 25 24255 - 24674 241 139 aa, chain - ## HITS:1 COG:Ta0634 KEGG:ns NR:ns ## COG: Ta0634 COG0584 # Protein_GI_number: 16081723 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Thermoplasma acidophilum # 17 126 3 109 232 65 33.0 3e-11 MSKCKHLYFTIVFLGIFLLESGFLVIGHRGNPNKFPEETIQSDNSAFNDGADFVELDLHL SKDNILVISHDRNLSRITGSSVIVSQNNFSYLHTLKCKNGEPIMSLNELFEYYQHMPRTK FLIETKKLVIIHLRTWNKF >gi|308165363|gb|AEHO01000021.1| GENE 26 24782 - 25114 502 110 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00432 NR:ns ## KEGG: LCRIS_00432 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 6 110 2 106 106 146 74.0 3e-34 MSAKYQQFNLIEEVTRNDGSKYYEISNINQNGIAEMAADNGKIKEVRILKLNIARTKQLQ IYEKYINETYDLQTLLLESDWRNPKWIEWEKPDGKIKDAYLAILKANKVG >gi|308165363|gb|AEHO01000021.1| GENE 27 25118 - 25285 102 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259501287|ref|ZP_05744189.1| ## NR: gi|259501287|ref|ZP_05744189.1| transcriptional regulator [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0523_0225 [Lactobacillus iners UPII 60-B] transcriptional regulator [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0523_0225 [Lactobacillus iners UPII 60-B] # 1 46 2 47 181 85 97.0 9e-16 MMDYTNSCNNVPAKTYHAKADVRLKDKQLLINGRTYQIIANEKNSLRSRFNAEKI >gi|308165363|gb|AEHO01000021.1| GENE 28 25212 - 25661 313 149 aa, chain + ## HITS:1 COG:SA0786 KEGG:ns NR:ns ## COG: SA0786 COG4470 # Protein_GI_number: 15926514 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 23 93 27 98 127 60 44.0 1e-09 MDELIRLLLMKKIALDLDLMQKKYDPFLDQYDFIVGDISSEHLRLKGFYSDDERVSIDKR ASTIVDYLEEYCNPNSPYFILQLMGDNTIKEIVLGRKYKHYYKYFGNQNNYFKEKKVKKI KFKSHKNYSVKISYKHNRQKKFVIRKRKG >gi|308165363|gb|AEHO01000021.1| GENE 29 25664 - 26260 711 198 aa, chain + ## HITS:1 COG:SPy1043 KEGG:ns NR:ns ## COG: SPy1043 COG0647 # Protein_GI_number: 15675039 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 197 3 192 254 172 48.0 3e-43 MNKQYGCYLIDLDGTIYRGEKTIQSGVDFVNRLNEKKIPYLFLTNNTTRTPEMIVAKLAS HGVITDVDHVYTPIMATVSYLLEHNPGTDAIPVYIIGQIGLWKGLLAEDRIVLDNNNPKY VIVGMDTDLTYKKICIATNAIRKGAEFIGTNSDHVLPSGDKLLPGNGSQCAMIAVASDQK PFFIGKPSAVIVNYALKK >gi|308165363|gb|AEHO01000021.1| GENE 30 26441 - 26791 225 116 aa, chain + ## HITS:1 COG:no KEGG:LA2_02330 NR:ns ## KEGG: LA2_02330 # Name: not_defined # Def: hypothetical protein # Organism: L.amylovorus # Pathway: not_defined # 2 115 4 117 202 89 42.0 5e-17 MKNKLSIVIYNFVAAILLSLWGTILLSWPILLVMMIAQRTNKLIHLSLFGALKNYSQLMS YLINPVFDKLQMSDLQSSLNGLIHFKDCKNLFSIALMLGCIWLFIFLYFEIWKKKK >gi|308165363|gb|AEHO01000021.1| GENE 31 26857 - 27048 169 63 aa, chain + ## HITS:1 COG:no KEGG:LA2_02330 NR:ns ## KEGG: LA2_02330 # Name: not_defined # Def: hypothetical protein # Organism: L.amylovorus # Pathway: not_defined # 3 61 144 202 202 67 55.0 2e-10 MGNFTNLFILFHRAMFTNNNWLFNPDTDPIILILTEEFFAACSATFLLIYELYFVRLLIK KGR >gi|308165363|gb|AEHO01000021.1| GENE 32 27151 - 27465 283 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309805299|ref|ZP_07699350.1| ## NR: gi|309805299|ref|ZP_07699350.1| hypothetical protein HMPREF9213_0640 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0640 [Lactobacillus iners LactinV 09V1-c] # 8 104 1 97 97 181 100.0 1e-44 MFNLGVSMLFLVLACFFLNIVLSVHAVDNKVIFIIKRRKVTYIMGRELMGLASCDDDRKA IINFTIVAAKYFNDQVTVEKINDSLKEYGQAPLTEEEKKFYGVK >gi|308165363|gb|AEHO01000021.1| GENE 33 27595 - 28239 546 214 aa, chain - ## HITS:1 COG:lin0035 KEGG:ns NR:ns ## COG: lin0035 COG0586 # Protein_GI_number: 16799114 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Listeria innocua # 3 213 7 217 219 196 51.0 2e-50 MNLLDFILNIDKHLITIVNSCGDWTYLILFLIVFVETGLVVFPFLPGDSLIFATIAMAAS PKYHLDLIICYIIFIIAAICGDSINYELGKWSELQSNKFKWFNKLINPQKKKAAEDFFEK HGGITIVIGRFIPIIRTFVPFVSGASKMHYRTFVIYNIVGAFLWVSLFSICGFLFGNIPA VQHHFSLLIIAIIAISILPIIILSIKNKLTKNSK >gi|308165363|gb|AEHO01000021.1| GENE 34 28267 - 29214 716 315 aa, chain - ## HITS:1 COG:lin2489 KEGG:ns NR:ns ## COG: lin2489 COG0492 # Protein_GI_number: 16801551 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Listeria innocua # 4 308 8 321 331 216 36.0 3e-56 MEYYDLAIVGAGPVGLFATKFANLHGLKTITFEALADCGGQINRLFPNKKIKDIPGYNSI IGHQLVDKLKEGINSKIITNYKVQEIIQKDSKIIIDNNYQVKTLLITSGMGAFTPKKLPL PIDSSCEKHIHYFVKNADHFQDKNVAIFGGGDSALDWAMQMADKCKIVIIHRRDQFRGME STLKFLHQHNNVRFLTPYLPQKIIWQNNQLNILLKKLGTEEMEEIKCDEAVIAFGFKSDN LLLKKWGLNLETGHVKVNSQMQSNIENIYAAGDACIYDGRVPMMALGFGEAQIAIMSIMN HLFPEKKLTIHLSSH Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:56:29 2011 Seq name: gi|308165321|gb|AEHO01000022.1| Lactobacillus iners LactinV 09V1-c contig00044, whole genome shotgun sequence Length of sequence - 34794 bp Number of predicted genes - 41, with homology - 40 Number of transcription units - 13, operones - 8 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 72 - 269 261 ## gi|309805357|ref|ZP_07699407.1| hypothetical protein HMPREF9213_0882 2 1 Op 2 . + CDS 304 - 519 142 ## gi|309805347|ref|ZP_07699397.1| hypothetical protein HMPREF9213_0883 3 1 Op 3 . + CDS 506 - 655 176 ## + Term 656 - 689 0.2 + Prom 760 - 819 11.1 4 2 Tu 1 . + CDS 988 - 1731 677 ## gi|309805360|ref|ZP_07699410.1| hypothetical protein HMPREF9213_0885 + Term 1762 - 1814 3.2 + Prom 1875 - 1934 7.8 5 3 Op 1 21/0.000 + CDS 1990 - 3048 1162 ## COG1420 Transcriptional regulator of heat shock gene 6 3 Op 2 29/0.000 + CDS 3060 - 3608 597 ## COG0576 Molecular chaperone GrpE (heat shock protein) 7 3 Op 3 31/0.000 + CDS 3625 - 5466 2235 ## COG0443 Molecular chaperone + Term 5481 - 5522 6.6 8 3 Op 4 . + CDS 5535 - 6668 1431 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain + Term 6711 - 6759 10.2 + Prom 6767 - 6826 13.5 9 4 Tu 1 . + CDS 6858 - 8696 1794 ## COG0481 Membrane GTPase LepA + Prom 8712 - 8771 6.7 10 5 Op 1 . + CDS 8832 - 9209 265 ## COG3764 Sortase (surface protein transpeptidase) 11 5 Op 2 . + CDS 9206 - 9382 138 ## LCRIS_01262 sortase 12 5 Op 3 7/0.000 + CDS 9379 - 11664 2194 ## COG0608 Single-stranded DNA-specific exonuclease + Prom 11666 - 11725 4.5 13 5 Op 4 . + CDS 11760 - 12287 634 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 12301 - 12341 1.1 14 6 Op 1 16/0.000 + CDS 12351 - 13307 725 ## COG0207 Thymidylate synthase + Prom 13317 - 13376 4.3 15 6 Op 2 . + CDS 13452 - 13829 367 ## COG0262 Dihydrofolate reductase 16 6 Op 3 . + CDS 13860 - 14195 251 ## LGAS_1190 hypothetical protein 17 6 Op 4 . + CDS 14206 - 15333 1094 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 18 6 Op 5 . + CDS 15362 - 16018 597 ## COG0406 Fructose-2,6-bisphosphatase 19 6 Op 6 . + CDS 16077 - 16649 549 ## LGAS_1187 TPR repeat-containing protein 20 6 Op 7 . + CDS 16677 - 17492 698 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 21 6 Op 8 . + CDS 17525 - 19018 1671 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 19024 - 19063 2.1 - Term 19004 - 19056 9.4 22 7 Op 1 7/0.000 - CDS 19057 - 20634 1454 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 23 7 Op 2 1/0.000 - CDS 20745 - 20969 335 ## COG5503 Uncharacterized conserved small protein - Prom 21027 - 21086 6.8 - Term 21066 - 21104 8.6 24 8 Op 1 . - CDS 21106 - 21426 304 ## COG0242 N-formylmethionyl-tRNA deformylase 25 8 Op 2 . - CDS 21359 - 21652 280 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 21705 - 21764 12.6 + Prom 21729 - 21788 11.8 26 9 Tu 1 . + CDS 21852 - 23750 2445 ## COG1217 Predicted membrane GTPase involved in stress response + Term 23774 - 23817 3.4 + Prom 23782 - 23841 6.6 27 10 Op 1 . + CDS 23894 - 25096 1258 ## COG0772 Bacterial cell division membrane protein 28 10 Op 2 . + CDS 25074 - 25406 352 ## FI9785_1208 hypothetical protein 29 10 Op 3 . + CDS 25403 - 25666 230 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 30 10 Op 4 . + CDS 25651 - 25956 154 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 31 10 Op 5 4/0.000 + CDS 25943 - 26440 295 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 32 10 Op 6 . + CDS 26442 - 26984 428 ## COG3480 Predicted secreted protein containing a PDZ domain 33 10 Op 7 . + CDS 26996 - 27472 214 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 34 10 Op 8 4/0.000 + CDS 27515 - 28147 581 ## COG1555 DNA uptake protein and related DNA-binding proteins 35 10 Op 9 . + CDS 28116 - 30395 1341 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 36 10 Op 10 . + CDS 30392 - 30868 535 ## LJ1004 hypothetical protein + Prom 30896 - 30955 7.7 37 11 Tu 1 . + CDS 31039 - 31377 256 ## LGAS_1173 DNA polymerase III, delta subunit + Term 31445 - 31482 1.0 - Term 31361 - 31419 7.6 38 12 Tu 1 . - CDS 31426 - 31689 307 ## PROTEIN SUPPORTED gi|116629807|ref|YP_814979.1| 30S ribosomal protein S20 - Prom 31863 - 31922 9.2 + Prom 31734 - 31793 6.6 39 13 Op 1 2/0.000 + CDS 31873 - 32142 412 ## PROTEIN SUPPORTED gi|42518932|ref|NP_964862.1| 30S ribosomal protein S15P/S13E + Term 32159 - 32203 4.3 + Prom 32206 - 32265 7.8 40 13 Op 2 . + CDS 32329 - 34218 1841 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 41 13 Op 3 . + CDS 34187 - 34793 488 ## FI9785_1198 hypothetical protein Predicted protein(s) >gi|308165321|gb|AEHO01000022.1| GENE 1 72 - 269 261 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309805357|ref|ZP_07699407.1| ## NR: gi|309805357|ref|ZP_07699407.1| hypothetical protein HMPREF9213_0882 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9219_0195 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9217_0811 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9213_0882 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9217_0811 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9219_0195 [Lactobacillus iners LEAF 3008A-a] # 1 65 1 65 65 73 100.0 4e-12 MEEQKQKPFSAKRWHEDASPDQLFGRIKSKKRLERNKREMEKVLRIQKKLFEERERLAKQ QDKQK >gi|308165321|gb|AEHO01000022.1| GENE 2 304 - 519 142 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309805347|ref|ZP_07699397.1| ## NR: gi|309805347|ref|ZP_07699397.1| hypothetical protein HMPREF9213_0883 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9219_0194 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9217_0810 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9213_0883 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9217_0810 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9219_0194 [Lactobacillus iners LEAF 3008A-a] # 1 71 1 71 71 131 100.0 2e-29 MVTTKGAFGSNPNIAIIVPKGTSGAYIEQLSFDDYKKQREFLFNSGSRIEKLTNDSETLI YRIRGGYNETK >gi|308165321|gb|AEHO01000022.1| GENE 3 506 - 655 176 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKPSKKELEETYIARIKSETRPPRTEADRKIGEERMKEIDEYIKKYLSN >gi|308165321|gb|AEHO01000022.1| GENE 4 988 - 1731 677 247 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309805360|ref|ZP_07699410.1| ## NR: gi|309805360|ref|ZP_07699410.1| hypothetical protein HMPREF9213_0885 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0885 [Lactobacillus iners LactinV 09V1-c] # 1 247 1 247 247 395 100.0 1e-108 MIKAIKVTEKSVILGFPDGTAKEVPISDFDCSVHVGDEFEMYEMGDKKIFSKKTPKTSNL SDKVSDFTNKISNDEGVQGFIDNIVKYDVNNLFDKILLAIFSVLGLNIIYILYMSSQYKA SIYSMLSYLSNLSSAFAFQNFVVFCAIAALVIKFSELKDGNKWKKATFVFPAVTVVVTVL MHVVCHKIFSILGGKYSFSSLISTFTNYADVENSGKMLAVFLFIVLILTIVSIVTFFMNL SKTKNNK >gi|308165321|gb|AEHO01000022.1| GENE 5 1990 - 3048 1162 352 aa, chain + ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 350 1 342 345 244 37.0 1e-64 MLTERQELILETIINDFTQTHEPVGSKTVMLQLPIKVSSATIRNEMVVLEDFGFLEKTHS SSGRVPSASGYRYYLDYLVDPIEISDSVYHQIIKQLDQPFHQVNEIIEEATKILSDLTNY TAFAAGPENIDIYITGFRIVPLSANRVMAILVTDDGNVQNQIYTLPHHTSGDEVEKAVAL INKQLIGKSLTDVNSGCLNQIAKELVSRGSATIFLDLLQDVIKDAASEQMYVNGQINLLN NSGINDLNKLRSLYQLIDQKQLMSDFIGFDTNQIINHNSHTNVRVHLGSEMPSKLLEDCS LLTVDYSVGKHGTGTIALLGPSNMPYSQMIGLLEYFRNELANKLLEYYGDFK >gi|308165321|gb|AEHO01000022.1| GENE 6 3060 - 3608 597 182 aa, chain + ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 33 180 26 172 174 114 52.0 1e-25 MKEHKDNSADSKKEKNNTKTKTSSNKEDVSKYTKKIQELELKNQELEDKYLRSEAEIQNA QNRYSKERAQLIKYESQSIAKDILPALDNLERALMVESDSDVTVQLKKGVQMTLDALIKA LSDHGISEIKADGEKFDPKLHQAVQTVDAVKDQKPDHVVQVLQKGYLYKDRTLRPAMVVV TK >gi|308165321|gb|AEHO01000022.1| GENE 7 3625 - 5466 2235 613 aa, chain + ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 613 1 608 611 779 71.0 0 MSKVIGIDLGTTNSAVAVLEGKEPKIITNPEGNRTTPSVVAFKNGEIQVGEVAKRQAITN PNTISSIKRHMGEEGYKVKVDGKEYTPQEISAMILQYIKKFAEDYLGEPVKDAVITVPAY FNDAQRQATKDAGKIAGLNVQRIINEPTASSLAYGLDKDEKDEKILVYDLGGGTFDVSVL ELGDGVFQVLSTNGDTNLGGDDFDNAIINWLIENFKKENGVDLSSDKMALQRLKDAAEKA KKDLSGISSTHISLPFISAGESGPLHLEADLSRAKFDELTHDLVARTKIPFDNALKDAGL SVSDIDKVILNGGSTRIPAVQEAVKQWAGKDPDHSINPDEAVALGAAVQGGVITGDVKDI VLLDVTPLSLGIETMGGVFTKLIDKNTTIPTSKSQIFSTAADNQPAVDVHVLQGERPMAA DNKTLGRFQLTDIPAAPRGVPQIQVTFDIDKNGIVNVSAKDMGTGKEQKITIKSSTGLSD EEIKRMQKEAEEHAEEDKKKKEEADLRNEVDQVIFSTNKTLEEVKGKLSDNDIKPVEDAL EALKKAQKDNDLAAMKEKKDALSKVAQDLAVKLYQQQNTQGQSGTKENGNDKGTDGNGNS TVDGDFHKVDPDK >gi|308165321|gb|AEHO01000022.1| GENE 8 5535 - 6668 1431 377 aa, chain + ## HITS:1 COG:lin1509 KEGG:ns NR:ns ## COG: lin1509 COG0484 # Protein_GI_number: 16800577 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Listeria innocua # 1 373 1 370 376 356 52.0 4e-98 MSQRDYYDILGVDKTASDAEINKAYRKLAKKYHPDINHEQGAEEKYKEVNEAYEVLHDKQ KRAQYDQFGHAGVNGQSGFGGGTQYSDFSGFDGFGDIFGDLFGGGTGRRHVDPTAPQRGQ DLDYTLTIDFMDAIKGKKTNITYTRSEICSSCHGNGAEKGTHPITCSKCKGMGVINITRQ TPFGIISQQASCDQCGGKGLIIKHPCNTCHGKGCIDKEQTLQVDIPAGIDNGQQIRLSGQ GEAGKNGGTYGDLYIVFKVKPSAEFTRRGTTIYSEAKISFAQATLGDYIQVDTVHGKVSL KIPAGTQPNTRFKLRGEGVPRLNGKGNGDQEVLINIVIPKEINDKQKEALVDFVKAGGGS ITPQEKNFFERLKDKLS >gi|308165321|gb|AEHO01000022.1| GENE 9 6858 - 8696 1794 612 aa, chain + ## HITS:1 COG:BH1342 KEGG:ns NR:ns ## COG: BH1342 COG0481 # Protein_GI_number: 15613905 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Bacillus halodurans # 10 606 10 606 609 811 66.0 0 MDLDKLKEYQKHIRNFSIVAHIDHGKSTIADRILELTDTVSERQMKNQLLDDMPLERQRG ITIKLNSVEVKYCAKDGETYFFHLIDTPGHVDFSYEVSRSLVACEGALLIVDASQGVQAQ TLANTYLAMDSDLEILPVINKIDLPSADPDMCKDEIEEMLGLDATEAVEVSGKTGIGIPD LLERIVQDIPAPSGDLKAPLKALIFDSKYDDYRGVVLSVRIEDGIVKPGDKIRIMNTGKD FEVTEVGVSSPYPVKKEMLVAGDVGYITANIKSVRETRVGDTITSSCNPTATPLPGYRQI PPMVYSGMYPVDNQKYDDLKEALQKLQLNDAALEFEPETSQALGFGFRCGFLGLLHMDVV QERLEQEFGMQLIMTAPSVDYHAIMNDGSVKLIDNPSDLPDAGEYQDVQEPFVKAEIMVP NDFVGAVMELCQKKHGEFQTMDYLDKFRVNVIYKMPLADIIYDFFDDLKSFTKGYASLDY EIIGYRSTNLVKIDMLLNHEPVDALSFIAHNDEAQTRARQMTSMLKKLIPRQNFEVDVQG AIGAKIISRATIKPYRKDVTWKIHTGDPDRRAKLLEKQRKGKKRMKAIGRVEVPQDAFMA VLKMDDDDIKGK >gi|308165321|gb|AEHO01000022.1| GENE 10 8832 - 9209 265 125 aa, chain + ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 1 115 89 208 287 104 46.0 5e-23 MHNLNKDKIRENEKSKGQFDFSKVKSIDFAQVTKSRIKNNAKAVGAIAIPSVHMYLPILK GLSNDSLSTGGGTMRPDQKMGHGNYPLAGHYMTANGSLFSPLESVKKGKLIYLTDLKKFI FIKYI >gi|308165321|gb|AEHO01000022.1| GENE 11 9206 - 9382 138 58 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01262 NR:ns ## KEGG: LCRIS_01262 # Name: srtA # Def: sortase # Organism: L.crispatus # Pathway: not_defined # 1 57 156 212 212 92 78.0 7e-18 MKKKVPPTAVWLVDDTRKNIVTLITCADWGANRWAIRGSLIKTVKATDEKLRIFKLRQ >gi|308165321|gb|AEHO01000022.1| GENE 12 9379 - 11664 2194 761 aa, chain + ## HITS:1 COG:BS_yrvE_1 KEGG:ns NR:ns ## COG: BS_yrvE_1 COG0608 # Protein_GI_number: 16079816 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Bacillus subtilis # 13 550 19 559 560 404 38.0 1e-112 MIWKKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNDDESKLADPFLMHDM KKTVNRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPS LERYQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCN YPNQDYPFDDYCGAGVAYTICRALMTDNMSELLDLAMIGTIGDMVKVSGEGHIIVKRGLE ILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNLLLCDDEEE AEKLASIVEKLNDKRKQLTQEIFEICEKQIQQYGWQSKKTLVLYDHNFHEGVLGLVTNKI AEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGTVLTKFGGHEFACGLSLKKD SLVKLRNCFESSFQPVATSELVKMYDDELNLNDLTLDTYRQMVKVGPFGTDNPEPVFSIT NPHISKLIKIGQNKNHIKMCVSNFSNELDLIGFDRSYLDTNILPYVHMIMVTFGINKWNN KAKLQGIISDFIFAAPPSLTSVRIVDLRNENYIMGFADRYLLFDKNSIEIANNIDNISSD KIILATDYMQNNESVVFLDTPTSKEQFDRVLNNDFNKIYLRFLIDPYPISKLPDRELFES IFNYIVNHPNLSLSDYKLVATYLGINYDCIKFVLRVFWELNWIDYDVKNELIKAITSPKV TKITDSKYFQAISQRLTFTDMLKNMSSDSLLKYIKDHNSNL >gi|308165321|gb|AEHO01000022.1| GENE 13 11760 - 12287 634 175 aa, chain + ## HITS:1 COG:FN1483 KEGG:ns NR:ns ## COG: FN1483 COG0503 # Protein_GI_number: 19704815 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Fusobacterium nucleatum # 3 172 1 170 170 213 59.0 1e-55 MAIDFKKYIASIKDFPNEGIIFRDITPILQNGTAYRAATHELAEFAKSKGAEVIVGPEAR GFIVGCPVANELGIGFVPARKPHKLPRAVKKASYDLEYGSNSLEMHMDAIKPGQKVVICD DLMATAGTLHATVKLVKELGGEVVGAAFYVELVDLKGVEKFSDIDIYSLVKYHGE >gi|308165321|gb|AEHO01000022.1| GENE 14 12351 - 13307 725 318 aa, chain + ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 8 318 4 314 314 418 62.0 1e-117 MTKLEQPYLDLLQKIMLEGHDKSDRTGVGTRSIFGAQMHFDLSEGFPIITTKHVPFGLIK SELLWFLRGDTNIKFLLEHKNHIWDEWAFKNWVSSTEYNGPDMTNFGLRQQTDELFNIKY QEQMNIFTEKILSDATFSKKYGDLGNVYGAQWRRWQTSRGDTIDQLGNVIEQIKTNPDSR RLIVSAWNPEDIPNVALPPCHVLFQFYVNDNKLSLQLYQRSGDMFLGVPFNIASYSLLLN LVARETGLELGEFVHTLGDAHIYKNHFDQVNKQLSRNAYDSPTLWLNPLKHRVLDFEMKD IKLIDYNHHGTIKAPVAV >gi|308165321|gb|AEHO01000022.1| GENE 15 13452 - 13829 367 125 aa, chain + ## HITS:1 COG:lin1987 KEGG:ns NR:ns ## COG: lin1987 COG0262 # Protein_GI_number: 16801053 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Listeria innocua # 1 122 42 157 160 68 34.0 3e-12 MGRKTFDSFPGLLKNRHHVILTTDAEFTNYYKDNDQITIFNSLTDLRKWLLNEQKTIYII GGFSLFDALKDIPDRLEQTIIQNKFKADTKMAIIDYNRYKLINRKDFCKDTKNKYNYSFL TYVKL >gi|308165321|gb|AEHO01000022.1| GENE 16 13860 - 14195 251 111 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1190 NR:ns ## KEGG: LGAS_1190 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 108 1 108 111 145 69.0 6e-34 MSNTVKINGSNKEYTLSSNIKIYALIDAGFKKTVNGNYTYEHPLYKDSPYNATAKLKMTI NKELNHLTMVVTDINGLTKVNIFKNKQLVSMVELLQFVLKDLEEKEIIVEN >gi|308165321|gb|AEHO01000022.1| GENE 17 14206 - 15333 1094 375 aa, chain + ## HITS:1 COG:L52034 KEGG:ns NR:ns ## COG: L52034 COG0482 # Protein_GI_number: 15672819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Lactococcus lactis # 5 373 15 382 384 507 66.0 1e-143 MTDNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGVCTATEDFEDVK RVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLD ADYIAMGHYAKTVTDKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQVR MIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLPAMGGKIVTADGRIVGKHSGLMYYT IGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTGLPS NDTTIHCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGEECLGGA IIDKAYRGNHQLQLI >gi|308165321|gb|AEHO01000022.1| GENE 18 15362 - 16018 597 218 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 207 1 204 206 172 45.0 3e-43 MQLYFVRHGKTEWNLEGRYQGCHGNSPLLPESYEDIKRLSLFLKDTKFVAFYASPLERAL QTALKIKENMNIDVPVIADNRLREFDLGELEGMKFSEAERLYPDQIKAFRHEPDLYDPRK FHGESFSHMIKRGKLLIDEITSKYSGNNDKVLLVSHGAALCALIRSLEGYRLADLRKRGG LINTSLTILETKDSINFNELRWNETSYLGRKITSRDSI >gi|308165321|gb|AEHO01000022.1| GENE 19 16077 - 16649 549 190 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1187 NR:ns ## KEGG: LGAS_1187 # Name: not_defined # Def: TPR repeat-containing protein # Organism: L.gasseri # Pathway: not_defined # 1 189 21 208 214 182 52.0 6e-45 MICKIDAAPSDVNNYLELSTYLIENNSPEQALELLQKAKACTNDDTSSLDYNIAICFYML GDYQAAGKILDSMPNNDATLYQKALVAIKSGQYAKALAYAITIKKPSMRTYELIGDCWLS QGKLVEARLEYKKIEASIRSAKINFLLGVTYFPEDRAEAEKYFERSKKQDAKYFYSAKKQ YNSIVNMIKK >gi|308165321|gb|AEHO01000022.1| GENE 20 16677 - 17492 698 271 aa, chain + ## HITS:1 COG:BS_yrrC KEGG:ns NR:ns ## COG: BS_yrrC COG0507 # Protein_GI_number: 16079801 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Bacillus subtilis # 3 251 13 262 798 153 32.0 3e-37 MAELQLIGMVEGIIYENNEELFKILDVHIIRKIAGYDHDSIRVMGNFGEMDLSIRYKFVG ELIEHSKFGMQFKAKSYQAIMPAEYNAIVDYLASDKFAGIGKKTAEKIVSQLGEDLFTKI KDNNKVVEDLKLTDKQRQSLLNGILHMDELGEILTQAVQYGINKSIITDLYNKYKGETLS KIEEDPYALIAETRGYGFKIADSIANKLGFKADDSRRLKGALMQVLLDSALKDGNTYLLM DKWLENTGKLLYIDDFDLLANEVNNLKKITK >gi|308165321|gb|AEHO01000022.1| GENE 21 17525 - 19018 1671 497 aa, chain + ## HITS:1 COG:BS_yrrC KEGG:ns NR:ns ## COG: BS_yrrC COG0507 # Protein_GI_number: 16079801 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Bacillus subtilis # 1 457 302 767 798 338 41.0 1e-92 MYTIEKDIANDLKRISDSNKRDIPYLDDDLNSAIKHVEQKFDISYDDTQKKAIKTALNNS ISILTGGPGTGKTTIIRGILATLQEIEKIPNDVLYTDDPPFLLAAPTGRAAKRMSELTGI DAKTIHRLLGLGISDLNQENMNELDGEILIVDEMSMVDMFLFKNLVSSIFQLKHIVFVGD KDQLPSVGPGNIFSDLIDSSAFPTTKLSMIHRQSDDSSIVDLAHKINQNNAQANIFTKTP NYSFISCNPNSIADAIEKIVDIALEKGFCADDIQVLTAMYNGVSGINSLNDLLQNIMNPA KIDSKKVEVHNEIFRIGDRVLQLQNNPEKEIYNGQIGKVVGIDDSQKSAKLIVRFDDREV MLTSNDLSDLTRAYAITIHKSQGSEFPLVILALTMQNYIMLKKNLLYTAITRAQQNLVMI GEEQAYQIALKTEGNDRQTDLCSKIQCIFNKNDIELKENETDNVDNHFENYILTPDLIYS NKIDPMIGMEDVRLDDI >gi|308165321|gb|AEHO01000022.1| GENE 22 19057 - 20634 1454 525 aa, chain - ## HITS:1 COG:SP0121 KEGG:ns NR:ns ## COG: SP0121 COG0595 # Protein_GI_number: 15900063 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 522 37 554 559 644 59.0 0 MDCGIKFPEDGEMGINYIISDYSYLIKNREKIKALVVTHGHEDHIGGIPFLLKKIPEIPV YATPFALALIRGKLDEHGILKNSVLHEEYEDTVLQFSKLSVTFFRTTHSIPDTLGIAVHT PQGTVIFTGDFKFDLTPVMDQPAPDFQKMAKLGEEGVLALLSDSTNAEVATFTKSERFVA KSLHNIITGIKGRIIFATFASNLYRVSTAIKAAVATGRKVAIFGRSMENGIQNGIDLGYL DIPEGTIVEASEINKLPPEKAMILCTGSQGEPLAALSRIADGSHRQISIKPGDTVIFSSN PIPGNTTSVNHLINKLYEAGADVVHGKIHNVHTSGHGGQEEQKMMIELTKPEYFIPVHGE YRMQVIHTETAQATGMAKDHTFVLENGDVLALTKTSSRIAGKIQIPDVFVDTSSTSEVGD IVVHDRKILAEEGLVVVVATIDYQHQRVLAGPDILSRGFVYMRESTDLITAAQKHIYHLL RVEMAKETKSDERELKKNIIETLQDFLYSRTERRPMILPMIIEKK >gi|308165321|gb|AEHO01000022.1| GENE 23 20745 - 20969 335 74 aa, chain - ## HITS:1 COG:L91273 KEGG:ns NR:ns ## COG: L91273 COG5503 # Protein_GI_number: 15672273 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Lactococcus lactis # 1 70 1 76 76 63 44.0 9e-11 MIYKVLYQKDQIVNPRRETTQTLYLKADNLVEARKLVEDNTPYNIEFIQELTGNSLAYEK QSPDFKLSTFPSNN >gi|308165321|gb|AEHO01000022.1| GENE 24 21106 - 21426 304 106 aa, chain - ## HITS:1 COG:BS_ykrB KEGG:ns NR:ns ## COG: BS_ykrB COG0242 # Protein_GI_number: 16078520 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Bacillus subtilis # 16 105 93 182 184 110 56.0 5e-25 MTKAILSSKKLLLIQKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAYKLKIKYQTVDGE QKQISLKGYPAIVASHEIDHLNGHLFYDRIDKKNPFSLDEDTVVIS >gi|308165321|gb|AEHO01000022.1| GENE 25 21359 - 21652 280 97 aa, chain - ## HITS:1 COG:lin1043 KEGG:ns NR:ns ## COG: lin1043 COG0242 # Protein_GI_number: 16800112 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Listeria innocua # 1 91 4 93 183 89 48.0 2e-18 MHDIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAA PQVGESVQMAALLVPDDQGNIIFKETFVNPKNYFRIS >gi|308165321|gb|AEHO01000022.1| GENE 26 21852 - 23750 2445 632 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 25 629 5 609 613 865 70.0 0 MIFISCDWSHGFFVSFREEYLLQRRDDIRNIAIIAHVDHGKTTLVNQLLKQSDTLPEHIQ IADRAMDSNAIERERGITILSKNTAVKYKNTTINILDTPGHADFGGEVERIMHMVDGALL LVDAYEGTMPQTRFVLKKALEAGVKPIVVINKIDRPGARPAEVLDEVLELFIELGASDDQ LEFPVVYASALNGTSSYEDDPAKQEQTMAPVFETICKNIPAPVDNSDESLQFQITMLDWD DYVGRIGVGRIYRGKVKVGDNITVMKIDGTKQNFRVTKLFGYFGLNRNEIQEAKAGDIIA ISGINDIFVGETIASAEDAEALPPLHIDPPTLQMNFVANDSPFAGKEGTQVTPKKLEDRL IKQTRTDVSLKVESTDQINSWTVSGRGELHLSILVEELRREGFEMQLSRPKVIYREIDGQ MCEPFEAVQVDTPDQYVGSVIDSISQRKGEMKNMESTGNGQTRLEFLVPSRGLIGYNNEF MSQTAGYGILNHTFEKYGPVIKNWAPGRRNGALVSINQGPSTTYSLQSVEERGQLFIGAG VEVYEGMIVGQSSRERDIAVNVTKGKNLTNTRAAGKDHAAAIKTPKTLTLEEAIEFLNDD EYCEVTPQSIRLRKKILNTNERKKADKKRDKD >gi|308165321|gb|AEHO01000022.1| GENE 27 23894 - 25096 1258 400 aa, chain + ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 4 399 15 415 434 228 36.0 1e-59 MRQKLKYLDYSILIPYLLLSLFGIVMIYSASSDILLVNGFSPMVYMRKQIINFILAFLAL GVPFFTIKLELLKRLNFVFFFLVISIAMLFFLIVLKIVSHGQAEINGAVGWIKVGPINVQ PVEFAKLALIFYLAFVLSRKDGHLIPGKIIENLKKPTMLVGLMLFLTILEPDFGGTSILF LIVCIMYSVSGMPIKYAVGGLLILFFSVLAIVFLLLHFQPAFITKYYQFQRLLAFAHPFE LEKTSGGQLVNSYYAIHNGGLFGVGIGNSMQKRGYLPEPYTDFILSIISEELGSIGGIAV VAILFFLVWRITEVGLHTQNQFNSLLCFGIATIIFTETFFNVGAVLGMLPITGVTLPFIS YGGSSIMALTAAVAVVLNIEANEKIMRARKDILNGVSFSR >gi|308165321|gb|AEHO01000022.1| GENE 28 25074 - 25406 352 110 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1208 NR:ns ## KEGG: FI9785_1208 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 110 1 109 111 73 41.0 2e-12 MGLVFQDKNKVEQISDRVAIVVYLNKNYEKSFLYKFGNLIYASPKNDYAIMYISESKAKK IITMLTENKFVKSVEISKYNDLDFSSEHTSELMKNLKTTAENKLKNGEEF >gi|308165321|gb|AEHO01000022.1| GENE 29 25403 - 25666 230 87 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 84 11 94 199 93 52 2e-31 LILRIISGKYARRNLFTLKSNSTRPTSDKVKESLFNAMGQFFSGGRVLDLYAGSGALGLE AVSRGYDSAVFVDINYAACEIIKKIFC >gi|308165321|gb|AEHO01000022.1| GENE 30 25651 - 25956 154 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 99 94 193 199 63 32 2e-31 KNILLTKEKERFEIFKNSDLRAISILASRNYHFDLVFLDPPYAKEKIIKVMKIMLDANIL NEKALIVAETDENVELPDVEGYSLINRHHLGRTKFKIYERK >gi|308165321|gb|AEHO01000022.1| GENE 31 25943 - 26440 295 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 5 165 2 161 164 118 38 6e-26 MKENNMRKAIFPGSFDPLTNGHVETVNIATTIFDKVFFVIMTNTNKKYLFTEEERLEIAK TVFKDNSKVEVIARPQELAVDVAMKLGANTIVRGLRNDADFNYEREIAAINKTLAPQLNT ILLLTGPENSFISSTMIKETATFGGDITKLVPDIVSEALKKKLNK >gi|308165321|gb|AEHO01000022.1| GENE 32 26442 - 26984 428 180 aa, chain + ## HITS:1 COG:L20937 KEGG:ns NR:ns ## COG: L20937 COG3480 # Protein_GI_number: 15674143 # Func_class: T Signal transduction mechanisms # Function: Predicted secreted protein containing a PDZ domain # Organism: Lactococcus lactis # 4 174 5 177 342 107 36.0 2e-23 MFKKKINIKVKFLIIGFCLVILLIFFIWPTNYYIESPGEVDRVSDYLVTKENKVSHNLYL VTVYGRKANMIDYLLSLLRSDESRFYSKDIMGDTNDNQYDQMQKCYMKSSQNNAIYIAAK SAGMKFKIRYQGVNVLDVLPQSRFYSKLKIGDMIIKVNKKNIRSSAALIEYLKKYPLHKN >gi|308165321|gb|AEHO01000022.1| GENE 33 26996 - 27472 214 158 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 23 154 217 343 350 87 40 1e-16 MRNKKEKQVDGKLINIPRLKKHGIGITLLDNTEIITKTPLKICTPDIGGPSAGLMFTLAC YQVFTHKRLSMHKKIVGTGTIEADGHVGTIGCIKQKTIAAVRANADIFLVPAERLQGEKK SQTNYQIALKTAKKLKTKMKIAPVYNFRDAIDYLKNNK >gi|308165321|gb|AEHO01000022.1| GENE 34 27515 - 28147 581 210 aa, chain + ## HITS:1 COG:SP0954 KEGG:ns NR:ns ## COG: SP0954 COG1555 # Protein_GI_number: 15900831 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 210 6 215 216 122 35.0 6e-28 MFFDKIKKFLDEKKTVCVIGGLILFGIFLYFQVRDDNTIENESLVQQNATKIKTNSDNKQ HSSHSSKFITCDISGAINKSGVYTLKSGSRLNDLIKKAGGLRSDAQLRAINRARILKDQD QIYIPDKTEKVADTAAETNNVKSDDKQDKININTATVQELQKLSGIGQKRAEQIIECRER IGGFKSIDDLKQVSGIGVKTIEKLKPHLVL >gi|308165321|gb|AEHO01000022.1| GENE 35 28116 - 30395 1341 759 aa, chain + ## HITS:1 COG:SPy1408_2 KEGG:ns NR:ns ## COG: SPy1408_2 COG2333 # Protein_GI_number: 15675328 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Streptococcus pyogenes M1 GAS # 483 751 28 299 299 191 37.0 6e-48 MKSLNHISFYNFKNGQFFLLALILAIESTALFLATNILQILVSIFFIAYLLFVFYFKFKE AFLTILCILLVFFLWGSYRKNISEYKNIDSTIKVYPDKLSHSENLYFGCAKYKNSNLYIS INSNQQFIEKFKEGIPFWIKVDDSKINSLMPNTVPGQFNFKKWGLCRDIKQQIQIKHFTI INRKPSIYDLFYLIRYKIKEYLSKMPRLLSFFSHELILAENPDKVNNKDILNSYRNLGVI HLLSISGLHVSLYTMIISKFCSIIKRTERECFILCTVILFVELFLSAFQPGFFRATLTFL LSSFFKSKKIPLSLLDILSLVFIFHLFLQPSLLLNVGAILSYLLVVAIIATRKYSMIMQN VFVNLAILPILLHYFFQMNILTIIFNFLIVPIFNFVLLPITFINLVTFAIIPKLSLVFEM IMQMITKVIETVARAKIGIIIFGQINWWQTILLLILTFILIIQPKMILLKLRIYYWLSLG YLLFFILIHFPLYSQVAFIDVGQGDSILITTPLNRKCYLIDVGGKVNFGKKGNSGISQTE KILLPFLYSQGINKIDGIFLSHQDADHVGNLRDLLSCIRVRKIYFGDGLLDNNSFKRRIA GKVAHTKLINLLAGNLVQEANIKFHILYPFEKTVGKNEDSLSLMFNLSGDNWIFTGDLDR AGEVKIINNFNIKADYIKLGHHGSRTATDPKYLRQIRPKLAIISSGRNNRFGHPHAETLK TLNECKIPYLNTQDNGTIIFRHYLWNKKTIKTCFNKDRL >gi|308165321|gb|AEHO01000022.1| GENE 36 30392 - 30868 535 158 aa, chain + ## HITS:1 COG:no KEGG:LJ1004 NR:ns ## KEGG: LJ1004 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: Purine metabolism [PATH:ljo00230]; Pyrimidine metabolism [PATH:ljo00240]; Metabolic pathways [PATH:ljo01100]; DNA replication [PATH:ljo03030]; Mismatch repair [PATH:ljo03430]; Homologous recombination [PATH:ljo03440] # 1 158 1 158 329 146 53.0 3e-34 MTLISLFKQSNKDKNHLLIYGTNDLLNNYIMTDFVKQKQFSNYDLTYVDVLESGIDGLIA TMSESSLFSLQRLIIVKNPIFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKI DKRKAIVKLLIKNVNVVETNFKAQEVAKVLKSIAAAEK >gi|308165321|gb|AEHO01000022.1| GENE 37 31039 - 31377 256 112 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1173 NR:ns ## KEGG: LGAS_1173 # Name: not_defined # Def: DNA polymerase III, delta subunit # Organism: L.gasseri # Pathway: Purine metabolism [PATH:lga00230]; Pyrimidine metabolism [PATH:lga00240]; Metabolic pathways [PATH:lga01100]; DNA replication [PATH:lga03030]; Mismatch repair [PATH:lga03430]; Homologous recombination [PATH:lga03440] # 1 112 218 329 329 124 55.0 1e-27 MTAIFNKNYVEANRRLDEQINNGLTPIALLAIFESQLEFLLCVKILQKRGWVKDQIVDEL DANPYRIYYALNNRLDITRLKQSIKYAIKLDYGYKNGTYTGASFFKRYLLNI >gi|308165321|gb|AEHO01000022.1| GENE 38 31426 - 31689 307 87 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116629807|ref|YP_814979.1| 30S ribosomal protein S20 [Lactobacillus gasseri ATCC 33323] # 1 86 1 86 88 122 76 2e-27 MILMPQIKSAIKRVITSDKANKRNASDLSKLRTQVRKFKEAVAANADNVNDLHIEAARAL DKAASKGLISKNKANRDKSRLTKKVAK >gi|308165321|gb|AEHO01000022.1| GENE 39 31873 - 32142 412 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518932|ref|NP_964862.1| 30S ribosomal protein S15P/S13E [Lactobacillus johnsonii NCC 533] # 1 89 1 89 89 163 87 2e-39 MAITKEKKDQLVKEFARHEGDTGSAEVQIALLTEDINNLNDHLKLNKQDHHSYVGLLKKI GHRRNLLRYLKGKDIQRYRDLITKLGLRR >gi|308165321|gb|AEHO01000022.1| GENE 40 32329 - 34218 1841 629 aa, chain + ## HITS:1 COG:SPy1020 KEGG:ns NR:ns ## COG: SPy1020 COG0595 # Protein_GI_number: 15675021 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 552 4 552 553 582 52.0 1e-165 MTQQIKIMMLGGVRENGKNMYGVQVDDEIFVLDAGLKYPDSSLLGIDIVIPDLQFFADYG DRVAGIFLTHGHADAIGALPYILRDYDIPVFGSKLTIELAKIAVQHENKQCNDDLFHVID EDTEIDFNNVTISFFKTTHSLPDSLGIDVSTEKGEIVYTGDFKFDPSAKKDYRMDFVRLA DISRKGVLALLSDSTNSESVLQNDQQPDIEKYILNVFKNHDGRIIVASKASNIVRVQEIF QAAAATERKVFLTGRDIGRIVYTAMQMGYLNVPKDILIHGKDLKNIPDKNILILETGRMG EPLKSLQKMATNRHRMIKIKNGDLVFIATTPSHSVETMVAQTSDIIYRSGGIVKQLGYDK HTSGHATGRDLQMLIDTLKPKYLIPVIGEYRLLEIHKNLAVEAGMDPENIYITKNGDCLL LDDDKFYLTDPVPAEDTMIDGSGVGDVGNIVLRDREILSDDGIFIAAVTIDRKKKKIVAE PLVSTRGFIYIKESHDVMDGASDVIKTTISNNFNHKKFDWTELKQDLHTNLEKFLYKETG RRPVVLPIVMEVNQNRHRAMVRRQANVSADHDDIETVKANSNLNVISQIVKKGTYSNSAA VSKYKFNNNRKIKIKRDIKNVRFRPKKIN >gi|308165321|gb|AEHO01000022.1| GENE 41 34187 - 34793 488 202 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1198 NR:ns ## KEGG: FI9785_1198 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 202 1 202 285 145 38.0 1e-33 MSVSDLKKLIELAQKALTIGDLERAKHCYLQYLSVQHDIKCVIALGNIFLQEKRPDEAYK LLKDESDLFSDDMLFKFYLKVLQERHFYIEAKQVSYLLGKPLAIEILPIVGSDADKIMLD FHKLNIITQEDYIKLYSLDEETFIEFSKSLLLDPTTNFMVKATLCNDFIKLGVSQKINIR ILGQMQSFVPADTSIFYQNSIY Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:57:29 2011 Seq name: gi|308165290|gb|AEHO01000023.1| Lactobacillus iners LactinV 09V1-c contig00014, whole genome shotgun sequence Length of sequence - 30739 bp Number of predicted genes - 30, with homology - 30 Number of transcription units - 13, operones - 7 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 253 102 ## COG1396 Predicted transcriptional regulators - Prom 277 - 336 10.2 + Prom 237 - 296 9.3 2 2 Tu 1 . + CDS 421 - 597 230 ## gi|312870862|ref|ZP_07730967.1| conserved hypothetical protein + Term 644 - 671 -0.8 + Prom 919 - 978 5.0 3 3 Tu 1 . + CDS 1031 - 1204 121 ## gi|309803446|ref|ZP_07697540.1| conserved domain protein + Term 1305 - 1340 3.1 + Prom 1371 - 1430 6.8 4 4 Op 1 . + CDS 1484 - 1663 178 ## LM5578_p11 phage transcriptional regulator, Cro/CI family 5 4 Op 2 . + CDS 1757 - 1936 226 ## COG3617 Prophage antirepressor 6 5 Op 1 . + CDS 2085 - 3125 687 ## SP670_2156 phage putative head morphogenesis protein, SPP1 gp7 family 7 5 Op 2 . + CDS 3127 - 3321 232 ## HMPREF0868_0553 hypothetical protein 8 5 Op 3 . + CDS 3305 - 3721 453 ## HMPREF0868_0554 hypothetical protein + Term 3733 - 3778 9.8 + Prom 3785 - 3844 5.8 9 6 Tu 1 . + CDS 3896 - 4177 364 ## gi|259501431|ref|ZP_05744333.1| toxin-antitoxin system - TRNA 4389 - 4472 57.7 # Leu CAG 0 0 + Prom 4455 - 4514 9.4 10 7 Op 1 . + CDS 4553 - 5422 344 ## PROTEIN SUPPORTED gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 11 7 Op 2 . + CDS 5426 - 7711 2266 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 12 7 Op 3 . + CDS 7695 - 8972 1095 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Term 9182 - 9221 5.4 + Prom 8995 - 9054 9.0 13 8 Op 1 . + CDS 9234 - 10910 2019 ## COG0018 Arginyl-tRNA synthetase + Term 10940 - 10983 0.5 + Prom 10921 - 10980 5.0 14 8 Op 2 . + CDS 11006 - 11920 1119 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 11959 - 12012 12.1 - Term 11953 - 11993 -0.0 15 9 Tu 1 . - CDS 12006 - 12884 823 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit - Prom 12906 - 12965 9.6 + Prom 12826 - 12885 9.9 16 10 Op 1 . + CDS 12945 - 15023 1842 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 17 10 Op 2 . + CDS 15043 - 15393 434 ## lhv_1666 hypothetical protein 18 10 Op 3 5/0.250 + CDS 15403 - 16626 957 ## COG0420 DNA repair exonuclease 19 10 Op 4 3/0.250 + CDS 16613 - 19006 2495 ## COG4717 Uncharacterized conserved protein 20 10 Op 5 . + CDS 19046 - 19984 853 ## COG3481 Predicted HD-superfamily hydrolase + Term 20064 - 20100 2.2 - Term 20052 - 20088 3.2 21 11 Op 1 . - CDS 20112 - 21005 806 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 21035 - 21094 6.5 22 11 Op 2 . - CDS 21096 - 21407 465 ## gi|259501418|ref|ZP_05744320.1| hypothetical protein HMPREF0520_0928 23 11 Op 3 . - CDS 21419 - 21856 559 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - Prom 21958 - 22017 8.9 + Prom 21857 - 21916 8.4 24 12 Op 1 7/0.000 + CDS 21947 - 22696 263 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 25 12 Op 2 . + CDS 22680 - 23876 998 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 26 12 Op 3 . + CDS 23888 - 24538 867 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 27 12 Op 4 2/0.500 + CDS 24557 - 24877 336 ## COG0526 Thiol-disulfide isomerase and thioredoxins 28 12 Op 5 . + CDS 24902 - 25546 674 ## COG0073 EMAP domain 29 12 Op 6 . + CDS 25581 - 26903 1404 ## COG0773 UDP-N-acetylmuramate-alanine ligase + Term 26915 - 26952 3.3 + Prom 26935 - 26994 9.3 30 13 Tu 1 . + CDS 27025 - 30739 3752 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases Predicted protein(s) >gi|308165290|gb|AEHO01000023.1| GENE 1 1 - 253 102 84 aa, chain - ## HITS:1 COG:SPy0657_1 KEGG:ns NR:ns ## COG: SPy0657_1 COG1396 # Protein_GI_number: 15674725 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 84 1 89 123 67 41.0 6e-12 MRNNEEIMQLLERLKADKKMSLREISRKTDIAVSSISRYFNRTRDFPLDKLDRFAKAFNV SPEYILNVSKPCDITTIYNQLHEK >gi|308165290|gb|AEHO01000023.1| GENE 2 421 - 597 230 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312870862|ref|ZP_07730967.1| ## NR: gi|312870862|ref|ZP_07730967.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] # 1 58 1 58 58 73 93.0 5e-12 MQINLRRIKAERVFKKISQAQMAKKLGISRTSYAKKEEALERLLLKVQIQDVNYVNRI >gi|308165290|gb|AEHO01000023.1| GENE 3 1031 - 1204 121 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309803446|ref|ZP_07697540.1| ## NR: gi|309803446|ref|ZP_07697540.1| conserved domain protein [Lactobacillus iners LactinV 11V1-d] conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners LactinV 11V1-d] conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners UPII 60-B] # 1 57 1 57 57 106 100.0 7e-22 MVYADNPYLAWEFLEHKGFAKHVKNTTYRITDKGIQYLEDLFYIQILVERRLMSEKK >gi|308165290|gb|AEHO01000023.1| GENE 4 1484 - 1663 178 59 aa, chain + ## HITS:1 COG:no KEGG:LM5578_p11 NR:ns ## KEGG: LM5578_p11 # Name: not_defined # Def: phage transcriptional regulator, Cro/CI family # Organism: L.monocytogenes_08-5578 # Pathway: not_defined # 3 59 1 57 78 65 57.0 5e-10 MQITLKAARVNKGLTQREAAKYLKVNFQTISKYEIDSSKIPMKLLKDMCSLYKIPMNYI >gi|308165290|gb|AEHO01000023.1| GENE 5 1757 - 1936 226 59 aa, chain + ## HITS:1 COG:SPy0980_1 KEGG:ns NR:ns ## COG: SPy0980_1 COG3617 # Protein_GI_number: 15674990 # Func_class: K Transcription # Function: Prophage antirepressor # Organism: Streptococcus pyogenes M1 GAS # 2 46 67 111 123 72 71.0 1e-13 MNFISEPNLYKLIFQSRKPEAEKFADWVMYEVLPAIVYKGVYMTDKKAYDIAHDRSRQP >gi|308165290|gb|AEHO01000023.1| GENE 6 2085 - 3125 687 346 aa, chain + ## HITS:1 COG:no KEGG:SP670_2156 NR:ns ## KEGG: SP670_2156 # Name: not_defined # Def: phage putative head morphogenesis protein, SPP1 gp7 family # Organism: S.pneumoniae_670-6B # Pathway: not_defined # 117 345 300 526 527 119 37.0 3e-25 MDEVKAKNLVEVACNAERYSEVAPKVEQAMTSFTRSVVADTMKKNVELHYKLGLSPKIVR KLGRGSSKKRSTSGADCEFCTERVGTFPYNKDNINKGIFSRHAHCTCTLEYFPGNGKKQN SWTKRWEKVGEDDKSKLFKEQLASKKVTRIRRNKRVSIAIAKQSLKDLLPIEKIVTADLK AIAKVNGSQLSGLKYRLKTVDSLARKIISDSKEKGIGLNEASDLIHDKLRYTILKEPNTF TDNYFKTVEELHRKKYTVVRVKNTFKEGAVYKGVNTLVKDPHGNIFELQFHTPQSVAIKE NELHKLYEEQRILDKRKDLEKYQELKQKMVKLSDQIINPLGIERID >gi|308165290|gb|AEHO01000023.1| GENE 7 3127 - 3321 232 64 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0868_0553 NR:ns ## KEGG: HMPREF0868_0553 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 63 1 63 64 85 77.0 5e-16 MADFREKVQYFYCPDYKKYVKCKDGLFYCIQKGKEIYNDFYDKILIGDIYTEDVTKEEYY AQLS >gi|308165290|gb|AEHO01000023.1| GENE 8 3305 - 3721 453 138 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0868_0554 NR:ns ## KEGG: HMPREF0868_0554 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 138 1 138 141 165 60.0 7e-40 MLNYLRAFIIALIAHWGQKDKGGHPYFFHPFRVSQGVKSLRVKVVALLHDVLEDSEKFNF SDFYFLDEEQKEAIKLLTHNKSVDYFDYIQEVKKNMIAREVKLADLSDNMNLSRLKEITE KDKRRYDKYKTAKNCLLN >gi|308165290|gb|AEHO01000023.1| GENE 9 3896 - 4177 364 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259501431|ref|ZP_05744333.1| ## NR: gi|259501431|ref|ZP_05744333.1| toxin-antitoxin system [Lactobacillus iners DSM 13335] toxin-antitoxin system [Lactobacillus iners DSM 13335] # 1 93 15 107 107 151 97.0 1e-35 MRTVNLKQRGNSMAVRLPKSVLTQAGIGNSPTVFDISVNNDKEIILRKKKKPKNLKELFK GFDYKKYWAEWNQEHSGESKEINWGESVGREKF >gi|308165290|gb|AEHO01000023.1| GENE 10 4553 - 5422 344 289 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 [Vibrio cholerae MZO-2] # 5 276 224 485 490 137 36 1e-31 MMKKIEENILYETITPRKSNTHKGDYGKILLIGGNLNFGGALIMSAEGALGAGAGLICAA THSINVASLHARDPEIMYVDWRDEQNLSKLIPQMDVIVCGMGMGIDAGAQKILQLVKATV TNNQIVVLDASALDIIATDTSVIAHQAKKIIITPHQIEWQRLSNIRVQYQNDSANQTALN GLFPQKNCILVLKSNKTKIYDQFGNILENPLGNPGMATGGCGDTLSGIIGGICGQFGGEL NAVASAVYLHSLAGDILYRKNYIVRPTAISALLPQLLKKYEYNNNDVER >gi|308165290|gb|AEHO01000023.1| GENE 11 5426 - 7711 2266 761 aa, chain + ## HITS:1 COG:alr4773 KEGG:ns NR:ns ## COG: alr4773 COG1501 # Protein_GI_number: 17232265 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Nostoc sp. PCC 7120 # 8 743 29 761 779 537 36.0 1e-152 MDFLDNKQHLIITNNQQKLKVDIITADIVRIYTDSDDKKSAAIEGNKKIDVDYKVFEKDD QLEIKTNRLKLLVKPDLRFDLYDYDGNPLIKNYHGELKPLDRGLTPEQRKLAEAEGHLIS ADSSAGSIMFVNELAEDEQFYGLGDKTGFLNKRGYEYDDWNTDNPKPQVESFTKLYKSIP FLIGVKNSHPYGIFVDNTFKAHWDLGKESNDYYYYSSEKAELDVYLIVGDTIKNIVSNYT YLTGRTPLPQKWTLGYQQSRWGYSATQAEVERIAGLLRKHNLPCDVIHLDIDYMDGFRVF TWRSDSYTDPHDFVKKLNQMGLHVVTIIDPGVKLDKNYGIYQEGLEKGYFVENLDGTIYV NEVWPGDSVFPDFGREEVRSWWSKNIKFLVNLGVSGIWDDMNEPASFRGEIPDNIVFHHE EIPTTHAQMHNVYGHYMDKATYEGLKKLTNKRPYVITRAAYAGTQKYSTVWTGDNQSLWP HLQMMVPQLCNLGLSGFSFAGTDIGGFGADCTAELLVRWIEGAIFSPLLRNHAAMGTRSQ EPWTYPTPTLSIYRKYLKLRYQFISYLYDLFYQESKTGLPIMRPLILNYPADQKVSNMND QFMVGDQVLVSPVLQAGATAKMVYLPQGKWHDYWTGDVYDGNQYIVKDAPLDVLPIFVKD NTLLPVDHYENYVDCQKYDQITFKLYGTQAEYDHYQDNGLDFDYQLGKYNVYHVYADENA AEVTWIHSGYDRHYQKIIVELNGKKLKFAYKSDGDKYEIEK >gi|308165290|gb|AEHO01000023.1| GENE 12 7695 - 8972 1095 425 aa, chain + ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 54 400 32 382 443 221 39.0 2e-57 MKLKNNNSFKNYQIIIFLVAFVCLIIFGWKVFRYHRAYVEVPTQFKTEICDNYAQDNLAL NAKAAIIYDLKSGQIMYAKNITQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREA IAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQL LDWHISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKHLLLEFPQVLDTT RISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRR IVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNSPINEV RACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLIFPNIPALNNENALAFDATT SKELK >gi|308165290|gb|AEHO01000023.1| GENE 13 9234 - 10910 2019 558 aa, chain + ## HITS:1 COG:SPy2151 KEGG:ns NR:ns ## COG: SPy2151 COG0018 # Protein_GI_number: 15675893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 558 1 563 563 635 58.0 0 MDFKQEVVETIAKVVSLPKEKIEALIERPKNVKLGDYAFPTFALAKIEHKNPAVIASELA AKLVNDNFAEIEAVGPYINFAIDHAKLVSVTLKKVLADQDKYGDQDNNQGNVPIDMSSPN IAKPMSMGHLRSTVIGNSIAKILQKIGFTPIKINYLGDYGTQFGKLITAYKLWGNEEAVK KDPITNLFHYYVKFHEEAEKDPKLEDEGRAWFKKLEEGDAEAVELWQWFREVSLQEFNRI YKELGVTFDSYNGEAFFNDKMQPVVDELRAKNLLHESRGAQVVDLDDDENPALILKSDGT SLYITRDLAAALYRKKEYAFAMSLYVAGNEQSGHFKQLKQVLGKMGYDWQKDIHHIPFGL ITQNGKKLSTRKGNVVFLDNVLKDAVKLALEQIEAKNPNLANKEQVAHQVGVGAVIFHDL KNERLDNFDFNLNEVVRFEGDTGPYVQYTNARAQSILRKVNVEIDDTKLALSDDWAFAVA KDIADFPAIIQKAFEKFEPSVIAKYSLNLSKKFNKYYANVRILNQDDELNARLALVQATS IVLTESLRLLGVDAPKEM >gi|308165290|gb|AEHO01000023.1| GENE 14 11006 - 11920 1119 304 aa, chain + ## HITS:1 COG:SPy1889 KEGG:ns NR:ns ## COG: SPy1889 COG0191 # Protein_GI_number: 15675705 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pyogenes M1 GAS # 4 284 3 289 293 297 54.0 2e-80 MAYLVNGNDIFKAARKNHYAVGAYNTNNLEWTRALIKGAKETRTPLLIQVSTGAAKYMGG YKTVRDLVLNEMDNMDVDVPVILNLDHGDYESAKECIALGYSSVMFDGHKLPVEENLEKT KEIVKLAHERGISVEAEIGKIGENQGADGGELASVEDAKRFVAAGVDKLACGIGNIHGVY PADWKGLNFDRLKEIADAVDVPLVLHGGSGIPQDQIKKAISLGIAKININTEFQLAFQEA TRKYIEAEKDLDKANKGYDPRKLLRAGTDAITESMKEMISWMGTRPIDGKDSVVKFDEAS LNEE >gi|308165290|gb|AEHO01000023.1| GENE 15 12006 - 12884 823 292 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 14 291 2 281 285 321 58 3e-87 MNTIEKQAIMNQYIYYLTISQNENNQNVDQIMRNLLIPRKWRHFLRIEKNILVNDKYLPL NFKVHTNDLITIKLNHVESLQQQYPASGNMPNIIYENDDVLVIDKPAGQKTHPNLYETDT ALNDCASYLGYSPYIVHRLDMLTNGLLLVAKNPAVVPILNKQLIDKTLSRSYFAWIEATN DISDNGTINLPIGDDPLDMRKRMVRADGLKAITHYQVVKKIGSKILVKLQLETGRTHQIR VHLAAIGHPIIGDPLYNSNYQAGEKLQLTAYKLVFQKPFSFDKEEVLLDKKI >gi|308165290|gb|AEHO01000023.1| GENE 16 12945 - 15023 1842 692 aa, chain + ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 2 669 1 677 714 581 46.0 1e-165 MITKIKEEILKLLGMLFYFLKRITHRFQLIRWLILACLTVILVVSTYYTIKVKTSNIATL KASLSTTTTIYDADNHQAGSLYAQKGSFVELSDISPNIQNAVISTEDRTFYKNPGFSIKG MVRALLMSMLHRGIVGGGSTLTQQLAKNALLTQKQTISRKIEELFFAIEINHVYSKRDIL TMYLNNAYFGNGVWGVQDASKRYFGKNASELNISEAATLAGMLKSPSYYNPIDHMQNALN RRNTVVNLMLQNKKITKSEADNAQHSVLSLKNTFRQKSGYRYPYFFDAVVDEAIHRYGLK EEDVMNKGLKIYTTLDQSYQKAIQDSFEIDGNFPATAADGVMAQGASVAVDPKTGAIRAV VGGRGRHVFRGYNRAMQMKRQPGSSLKPLAVYAPALQNGYHYDTSLSNKLQKFGKNGYEP HNVDNQYSDTIPMYQAVADSKNVPAVWLLDKIGINRGVQSMQNFGIKVPSDDKNLALALG GMSSGVSPLQMATAYSAFANDGNLPDQTYLIRKITDANGKVISQKSNDRYHRIISHRVAE EMTMMLLGVFSNGTAVSAQPAGYEVAGKTGSTEVPNSYGFGTKDQWIVGYTPDIVVATWV GFDKTDKEHYMHGISENGITRLYKSQMESLLPNSPLTKFKVKSAQQNEYASHTGDNDLKS SDSFQDKIKKGIDGLGKKVTEWYNDLKGLFKH >gi|308165290|gb|AEHO01000023.1| GENE 17 15043 - 15393 434 116 aa, chain + ## HITS:1 COG:no KEGG:lhv_1666 NR:ns ## KEGG: lhv_1666 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 116 1 115 116 79 41.0 5e-14 MINIYDSVNELTANFEKTDEFVALRDAINAVKANENSLKLYHHMEEIRNKFIAEQEKGNS EMSAELQKEYKEVEAQIGQDELIKNMMVHETAVYQLLNDIQKSLTDPISNLYDALK >gi|308165290|gb|AEHO01000023.1| GENE 18 15403 - 16626 957 407 aa, chain + ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 276 4 281 411 178 36.0 1e-44 MKFLHIADVHLDSPFLGLSFLPSELFCQIKNAIQLSFEKAVNFAIDNDVDLVLLAGDTFD SIHPTPQSKIFFANQIKRLVDRQIQVVMVLGNHDYSQIDDLLLNESPYFKIIGSNEQIEQ VDFMTKSQYKYRVVGFSYQHNHITEDIIAKYPPKSTSIYTIGLAHAGMKQSSVDQNNYAP FTLNEVKNLNYDYFALGHIHLRQVLSQEPWIVYSGNLQGRHVNEKDAKGFYFGQVDEQSQ NTQLQFIDVSPIVWQTVDLILDEPFKSTTKLCAKIQNLLADNNLRPTLFTVNIIGAELLS DAQLDMLNDKSMYEELSNNLQYHSLLVKVYYKHRDFIALNATDRALFAKAAEEILTANHT CELASSLMKKSNIVTNNLQKEEYLSDIYELARVRLEQKLRGNNDEIN >gi|308165290|gb|AEHO01000023.1| GENE 19 16613 - 19006 2495 797 aa, chain + ## HITS:1 COG:lin2324 KEGG:ns NR:ns ## COG: lin2324 COG4717 # Protein_GI_number: 16801388 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 787 1 901 908 113 23.0 2e-24 MKLIKIDVKNFGGLSDSEWKISSQLHVFYGPNEAGKSTIAAFIKQIMFGFHLKSQKSTFF ENYMPLKKVNQVGGSLTFKNENNQIITLERTYTTSDSKKGNLAVSLDNEKIPENIFWNNI KNIDGDFYTDSFIFNQDLLANVISLNQGDLLEHIYYLGAAQSSKLLLLRDKFVQSSEKLF KTNGRKPEINQILAQIKEKAETLSKQQVEFDQYSSLEKQKNDVQNEIELLNSQVKKLQQN QQNLAITKQELNNYAQYQQLKEQYQLIDFNQEDYTQAQALELTIEQLTTDIKNYESEIIA VSADNLDEQAKILAKKVEIYQIVNEADRLQSEIKQLCQELEQIQTYQPLYFKLESLSPED KLVMRSKYEQCLKTQAPKSIIKNISFGLIIFGLVGVFLKPLFYLLILSGLIIYYLDKIKT DHIRTNQIKSFEQEYGFDPQKFDLELVMSQIMQIENKRNILAEKRKKQAKIMEQVADLKQ KISQFVSPTNNLTSDLEKLDEHYQQVQQKVTTQKLLNEKISAIKAKLADVKLTLQKKLSQ NKVKDIEEFKAKGKLYHQNQQIKSQMMALSANLKDRVEILSKLDINSLHTTEQSLVSELE QIQAKLRIKYDTLAQLKLKLKELTNSDSLKRTQQELATANANLLDYTKEYLADLLVADWI QRGLDLASNDRFPKMLSSTNQYFALLTNGRYIKVAINDQLQVVKADGTSVAVEYLSRGTA EQLYFALKLAFVEQIADEIELPILIDDAFVNFDLQRIDNIVKLVQNLSAKTQVIVFTQNL QLAKMLTDNITKLEIRN >gi|308165290|gb|AEHO01000023.1| GENE 20 19046 - 19984 853 312 aa, chain + ## HITS:1 COG:SP1980 KEGG:ns NR:ns ## COG: SP1980 COG3481 # Protein_GI_number: 15901803 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 6 299 12 305 308 263 44.0 3e-70 MDIIVLIKDAILRKNKKNEPYLVLIFSDGDSYIRGNLWNVADDDVAKYVAGTFVQLNGIK EKFQNHYQIKILSMQTVGSSEVTNITDFTEKSYIDVNELVSELKDGILEINNPIWKSIVS FLVDKWYQKFIDFPAGKSNHHACKGGLLLHTVTMLKLAVAISKIYPQVNHSLLYAGCILH DLGKVIELSGPVATKYTVEGNLLGHLVIIDEQIILAAKELKIKEYDEDLVLLRHMVLSHH GLPEYGAARRPAILEAELLHKIDDMDATVYAITRSLQRTEPGTFTELISSQDNRRFYRPI DSSDLNKINNLE >gi|308165290|gb|AEHO01000023.1| GENE 21 20112 - 21005 806 297 aa, chain - ## HITS:1 COG:lin1482 KEGG:ns NR:ns ## COG: lin1482 COG0760 # Protein_GI_number: 16800550 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 11 290 7 281 294 142 33.0 5e-34 MQFKKSLKTLLLIAAFSGVALTATGCSKTVANYKGGKITQEDFYNKVKKSPAGQAILANM IINKTLQQQYGSQVSKKKVNTAYDNARKQYGARFEMVLQQNGMTPEAYKESIQTNLLLQA ALKDIKPITKAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGKGASFKDLAKKYSTD TGTSKNAGKIEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGS FQSHKSEIIARIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVLTQYMDADLKK >gi|308165290|gb|AEHO01000023.1| GENE 22 21096 - 21407 465 103 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501418|ref|ZP_05744320.1| ## NR: gi|259501418|ref|ZP_05744320.1| hypothetical protein HMPREF0520_0928 [Lactobacillus iners DSM 13335] hypothetical protein LineA_02470 [Lactobacillus iners AB-1] hypothetical protein HMPREF9213_0698 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_0066 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0466 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0971 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_1123 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0892 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9216_0591 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9223_0136 [Lactobacillus iners ATCC 55195] conserved domain protein [Lactobacillus iners UPII 143-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF0520_0928 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_0698 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_0066 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0466 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0591 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9217_0892 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_1123 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0971 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9223_0136 [Lactobacillus iners ATCC 55195] conserved domain protein [Lactobacillus iners UPII 143-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 103 1 103 103 174 100.0 2e-42 MKKSTIGLIIGLSAGICWGLKKRRPNKQDEAYFKQWSTSLISNCTNTKNGISKLKKQCDA LISEQMPIANQTIQELKDSFGKYSIAIKPKIAKMENSIKQLNK >gi|308165290|gb|AEHO01000023.1| GENE 23 21419 - 21856 559 145 aa, chain - ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 5 140 1 135 140 140 50.0 6e-34 MSNLVQDCIFCKIIRNEIPAYTVFENDDVKAFLDISQVTKGHVLIIPKKHLINFFDYSQE DAAKYLQYIPKIAQAIKASDKNIKGLNVFVNNGEIAGQVVMHSHIHLVPRYDENDGVNVP HINHAAEYTPEAYQEVANTIKQHLS >gi|308165290|gb|AEHO01000023.1| GENE 24 21947 - 22696 263 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 3 211 9 218 309 105 31 3e-22 MTLTIKKLTGGYTGITVIKDINLKIESGQVVGLIGLNGAGKSTTIKHLLGLLRMQRGEIT LNGIDLVQNPAAFKKNVAYIPETPILYPELTLKEHIELVILAYGLDHDSAYEHALHLCKL FRLENKLDWLPINFSKGMKQKVMIVAGFLAQSSLLVIDEPFTGLDPLAVANFIDLVKAAS NDGKMVLMTTHVLAEAQEIVDKFAVLNNGTIEKEGNLTEIRKFYGLKDTDSFDRLYKVLN QEHCNAKNS >gi|308165290|gb|AEHO01000023.1| GENE 25 22680 - 23876 998 398 aa, chain + ## HITS:1 COG:BS_ecsB KEGG:ns NR:ns ## COG: BS_ecsB COG4473 # Protein_GI_number: 16078069 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Bacillus subtilis # 1 389 4 402 408 113 25.0 6e-25 MQKIANKRLNSNARKQIHYLALVFNDFFVLALLLIFGALMFWYAKSIQTWPRNLWYYSPL LALVFSISFGFGSLVTLFEHADQQFLLSLDDQLEFYLKPMLKYSMVLPTIILLLVGGIAF PFAFLRLAIHPINYLILLVDMLLLKHVQHLLQEHSLYFNDKLHYNTIAFTVIGYFLILLG IYQPLVLLAIIVVAMVYIIRQPLQGFNWNKAISKEAQRKDRIDNFYSMFTDVQDKKITIS RRKYLDFLISRKKQTANMFLFQRILLRDPEYSNLLLRMIVFALLLIFIIQDYKLNTFLAA IVIFLTIYQLLPVANIYERNMMYHVQPISRSSRAVDLAKVLQKFILLQWLLISIGLVISS AGNLQSLLYILGLFVLTLILLYVYLPVKIGQTINKFKR >gi|308165290|gb|AEHO01000023.1| GENE 26 23888 - 24538 867 216 aa, chain + ## HITS:1 COG:BH3261 KEGG:ns NR:ns ## COG: BH3261 COG0220 # Protein_GI_number: 15615823 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Bacillus halodurans # 1 216 1 211 220 200 47.0 2e-51 MRLRNKPWAQKLVLEHPEALLNEPDPEIKIPWQERFADFSKPLAIEIGSGKGQFIINWAK QHPEMNFIGVELQTTAAGMILRKKLADQIDNLQIMCADAANIALYLPPKSADIIFLNFSD PWPKTRHEKRRLTYKSFLDKYKQVLKDNGHIEFKTDNQGLFEYSLQSMNNYGMLFDFVSL DLHQSNSEIYKQNIETEYEHKFAERGNRIYCVHAHF >gi|308165290|gb|AEHO01000023.1| GENE 27 24557 - 24877 336 106 aa, chain + ## HITS:1 COG:BH3253 KEGG:ns NR:ns ## COG: BH3253 COG0526 # Protein_GI_number: 15615815 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 12 102 10 100 106 97 51.0 6e-21 MKKFAEFSTSDFQREIAKGKVVLLFSASWCPDCRFLDMFLPEIVSEFTEYQFCYIDIDGA TDLAKKMNILGIPSFVAYQDGQEIGRLVSKDRKTKEEVVSFLKSLG >gi|308165290|gb|AEHO01000023.1| GENE 28 24902 - 25546 674 214 aa, chain + ## HITS:1 COG:BH3251 KEGG:ns NR:ns ## COG: BH3251 COG0073 # Protein_GI_number: 15615813 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Bacillus halodurans # 1 198 1 199 200 153 41.0 2e-37 MIISTNKKSYPDTIILILDQGEGRSTYEEKNNIVQVKDEKGKIVGYNFFKVSDFLDYDKL PNGQVKPDQKLLDILNDQLTKAGFDDKLELGKPTLVYGFVKTCEPHPDSDHLHVTTINVG DAEYQIVCGAPNIQQGQKVVVALPGTLMPNGQQIWPGELRGVKSSGMICSARELGLPHAP QKRGILVVPDTFKVGDEFEPTKCDELLACGQITL >gi|308165290|gb|AEHO01000023.1| GENE 29 25581 - 26903 1404 440 aa, chain + ## HITS:1 COG:BH3248 KEGG:ns NR:ns ## COG: BH3248 COG0773 # Protein_GI_number: 15615810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Bacillus halodurans # 8 436 4 431 433 453 53.0 1e-127 MLDKTKEYWFIGIKGTGMASLALILHDMGYHVAGSDIEKHTFTQDPLLAKGIKITPFDAN NIKDQGQVIIKGNAFKEENVEVKACIDKKIAWQSYPDTVQEIIAQHTSIGVSGSHGKTST TGLLAHVLGQLAPTSFLIGDGTGKAIKDSRFFVYEADEYRRHFLAYHPDYQIMTNVDFDH PDYFKDRDDYASAFQTAAEQTKKGLFVWGDDTRLNNIQVSIPKYTYGFNNTDDFQAYDIQ KNITGSTFKVKYHDIELGQFEIHLFGDHNILNTTAVIAVAYIEKESLDLVRAALLTYKGA KRRFSEKSYGKINIIDDYAHHPTEMKATLQAARQKYPNKILVAIFQPHTYSRTAEFADQF VEILKTADYAYVTPIFGSARENHGNISSQDLTKRIPNSEVISLDNIADLTKFKDAVLVFM GAGDITKYEVAYEALLEQNK >gi|308165290|gb|AEHO01000023.1| GENE 30 27025 - 30739 3752 1238 aa, chain + ## HITS:1 COG:BS_amyX KEGG:ns NR:ns ## COG: BS_amyX COG1523 # Protein_GI_number: 16080045 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Bacillus subtilis # 563 1137 77 631 718 441 39.0 1e-123 MNFKIDKKKITFLCTSTILGLVVSVSTVNADAVNNNIKNNNNVSLIKTPTDRSVDINQKT TKVIVHYQGDGNKWKLYTWVNNGTDKVDGKEYPWDGKDEYGNYKIIDMPGEHSKIGVLIK DSNWHKDGSNNDRQITTDLSGKAEVWYKEGSDQAQTVTPKFKKANIEINYLGSDAPASVK VKTDIEDKQADLSLKEDATKTMKQGAIELKATDNKEFNKVIINDNQQHEFTPLPGDKTDI YLVAGDKNVYYTASAAKKVIDNRKKSQQDSKLIEKLKKIAAKQEPVDFSKEQIVASTKVI VHYNGDASKWALWCWPFGKGGKQYSFDKEDDYGHYAEFNIDNSDKVGFLIKGQTDWSKDG KTKADRIVNTDNSGKVEVWYATGKDEAQVVTPSFKDVKLKLHYFGDEAPQTMSVWADDKQ ASKQTITLDKSETSGDKVGEITITGQDLHQINISNGKQVYKVTPSPKGQITDVYLNDVDN LPHYTEYSARKDFILSMANMDSDHVVKIKTNVQLSPDLVKQLLKAQNNEITKVEAINGTD NLSDTFKVTLKDSLELGVNSRIAFCGNPKAIDVRSYVRSKDFDDKYFYANDDLGSTYSKE KTTIKLWSPIATKVTLRLYKNLDNSSQPDKTIDLTCGDKGVWSTTLTDQDYKGWAYDYRL EFADGHVTTTDDPYSTATTINGVRSVIEDVDNIKPADFIKMPAFTKPTDAIIYEAGVRDL TADKNANVQHPGQFLGLTQEGTKTDTGYPTGLDYLKKLGVTHVQFLPMYDFGSIDEAHPS NAYNWGYDPVNYNVPEGSYSSKPADPAARILEMKEMINALHKQGLRVVMDVVYNHVYGLD KQAFDKVVPGYYFKYDDNGNMVDDIGMGNAVASQRRMVRKYIVDSVKYWAKNYHIDGFRF DTMGVLDTDTMAEVYKEINKINPGTLIYGEGWEIKPNERPKEASYVHANLIPNVGFFGDN LRNAVIGESGSFGNARSGLAQGNLTDKDKNGVSHYQEDAAAFVKGFMGSQGFNKHNYLNP GQVINYSTCHDNLTLYDALKAHLPNANAAEFVKRAKLADSMIMLSQGVPLFHSGQEALRT KNGNANSYNADITVNEIDWKRVEQNKDLVSYFQKLVQLRKTCPAFRMSTYDEIKKNITPI VKGENGVFAFEIKSADSTMYVIFNVNEKANQFTSVDLTGSKILLSSDDTTVGAKTILPGL STLVIKKISDKDKINDLIAHLEADKIAFQQLKDEIAKE Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:58:09 2011 Seq name: gi|308165279|gb|AEHO01000024.1| Lactobacillus iners LactinV 09V1-c contig00045, whole genome shotgun sequence Length of sequence - 6712 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 2, operones - 1 average op.length - 9.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 171 - 221 3.7 1 1 Op 1 7/0.000 - CDS 401 - 1612 1304 ## COG0282 Acetate kinase 2 1 Op 2 . - CDS 1623 - 2624 898 ## COG0827 Adenine-specific DNA methylase 3 1 Op 3 . - CDS 2715 - 2888 110 ## gi|259501495|ref|ZP_05744397.1| conserved hypothetical protein 4 1 Op 4 . - CDS 2872 - 3363 300 ## FI9785_1299 hypothetical protein 5 1 Op 5 . - CDS 3350 - 3499 95 ## gi|259501493|ref|ZP_05744395.1| hypothetical protein HMPREF0520_1003 6 1 Op 6 . - CDS 3558 - 3989 231 ## LGAS_1272 hypothetical protein 7 1 Op 7 6/0.000 - CDS 3973 - 4299 366 ## COG4537 Competence protein ComGC 8 1 Op 8 24/0.000 - CDS 4314 - 5309 992 ## COG1459 Type II secretory pathway, component PulF 9 1 Op 9 . - CDS 5281 - 6255 1069 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB - Prom 6296 - 6355 9.6 - Term 6329 - 6362 1.4 10 2 Tu 1 . - CDS 6379 - 6711 505 ## gi|315653335|ref|ZP_07906257.1| conserved hypothetical protein Predicted protein(s) >gi|308165279|gb|AEHO01000024.1| GENE 1 401 - 1612 1304 403 aa, chain - ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 4 400 1 395 395 402 50.0 1e-112 MEMIKKILAVNAGSSSLKFKLFSLKDEQVLAHGQADRIGLPEATFVLKLANGEVYQDKTE IRTQEDAVEKLLSWLTKSKIVNDLSEIAGVGHRVVAGGEYFAHSTLIDQDNLHKIYELNE YAPLHNCHEADGIKAFMKLLPNVPQVGVFDTSIHQTLDQVHYMYSLPYEYYEKYKVRKYG AHGTSVRYVSQRIASILKRPLDELNMVICHLGSGVSITAMKNGQSYDTSMGFSPLAGVTM SSRSGDIDPSALQYILGKETDLNFDQMIDILNNKSGLLGISGISPDMRDIRKAISQGDER ASLARNIFINRIVRYIGAYYLELQGIDVIAFTAGVGENDIGIRKEIMDQMSCYGLIPDYD SNQINGIEKIVSAPNSKIVAMVIPTNEELMIARDVVRIAKISD >gi|308165279|gb|AEHO01000024.1| GENE 2 1623 - 2624 898 333 aa, chain - ## HITS:1 COG:lin1617 KEGG:ns NR:ns ## COG: lin1617 COG0827 # Protein_GI_number: 16800685 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Listeria innocua # 5 330 4 327 332 159 33.0 8e-39 MEDLEHLNELYLSFEEVVDILRKELNVTFTEALVETFDNLEHKKIKVEANAPSAKIVELL TKKYANLEYEKLETSVKSHLFYLLTLKAADVDNFNSTQLPTPRILATIVALLWSKIVPQT AKEVIDPAIGSGTLLFSLIDQLRFLNHSKNSFVLTGIDNDPAMLDLADVSSYLNKLPVDL LRQDALQPWLTGKKDVAVSDVPVGYYPLDNNAKNFDNCQLSGHSFAHILFIEQIIKNLKP SGYAFLIVPKMILSGKDAADFMTWLTKKVNILAVVDLPDDLFANMKYPKSILVLQNHGQK MQLRKVLVTKLGSLKDKSSLVKLNVELNNWVNE >gi|308165279|gb|AEHO01000024.1| GENE 3 2715 - 2888 110 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501495|ref|ZP_05744397.1| ## NR: gi|259501495|ref|ZP_05744397.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_05949 [Lactobacillus iners AB-1] hypothetical protein HMPREF9213_0926 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1455 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9219_0537 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0465 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9216_0848 [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0360 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF9210_0651 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_0926 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1455 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9216_0848 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9218_0465 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0537 [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0360 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF9210_0651 [Lactobacillus iners SPIN 1401G] # 1 57 1 57 57 88 100.0 2e-16 MNLKNNRIFSILKMKVPATALFCALLVIVTCIVFIKYYQSAFFADLQINLDIYKSLR >gi|308165279|gb|AEHO01000024.1| GENE 4 2872 - 3363 300 163 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1299 NR:ns ## KEGG: FI9785_1299 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 9 163 5 165 167 88 35.0 9e-17 MKIFKTKNKGFMLAEAIIAILITVLCFEILYSTINTVRTVSHKRDGVNNVAFAYIQLNRF IKDRDLMLDIKHSDVKRAILKQKKKNEENKVYYETYSFYERKGQLRMSQGYMPLMMNLRT VYFSYVNKDVMKIKIVERDGRCSILAFKLKEMEKDKRANEPKK >gi|308165279|gb|AEHO01000024.1| GENE 5 3350 - 3499 95 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501493|ref|ZP_05744395.1| ## NR: gi|259501493|ref|ZP_05744395.1| hypothetical protein HMPREF0520_1003 [Lactobacillus iners DSM 13335] hypothetical protein LineA_05959 [Lactobacillus iners AB-1] hypothetical protein HMPREF9214_0125 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0928 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0290 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9218_0467 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9216_0850 [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0520_1003 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9214_0125 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0928 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0290 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0850 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9218_0467 [Lactobacillus iners LEAF 2062A-h1] conserved domain protein [Lactobacillus iners UPII 143-D] # 1 49 24 72 72 70 100.0 3e-11 MSLVYYSVVELQKIKTTVEIKVDRKLAEKMMAETKITTVKLHNRTYENI >gi|308165279|gb|AEHO01000024.1| GENE 6 3558 - 3989 231 143 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1272 NR:ns ## KEGG: LGAS_1272 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 10 143 7 138 138 79 29.0 5e-14 MLLRIKRLSRGFTLIESLIVLVITCSIISFPIIELKGYRDNLALINTRAQVKSAINFCLK ESIINKRVYFIRYSETSNKLKVMSDWSTAEKTFSINSQVKIINIDNLTIKKKSYVAPRTI YFKCGKITKRMTVQLMWGRLIEK >gi|308165279|gb|AEHO01000024.1| GENE 7 3973 - 4299 366 108 aa, chain - ## HITS:1 COG:SPy0103 KEGG:ns NR:ns ## COG: SPy0103 COG4537 # Protein_GI_number: 15674326 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGC # Organism: Streptococcus pyogenes M1 GAS # 5 89 6 90 108 59 37.0 1e-09 MKVLHKLFKRKVKGFTLIEMVVVIAIIAMLILLIAPNLFSYRDKANNTANDAFIKTVQMQ VDLYKDEYGKNITVSDMHDKNYLTDNQVKKIEANHITIKDGKVIAPKN >gi|308165279|gb|AEHO01000024.1| GENE 8 4314 - 5309 992 331 aa, chain - ## HITS:1 COG:SA1373 KEGG:ns NR:ns ## COG: SA1373 COG1459 # Protein_GI_number: 15927123 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Staphylococcus aureus N315 # 3 331 9 355 356 86 23.0 8e-17 MFFKVFSKDKLNKSEQLVFLDYLQQSLNNGFSFNQSLKILPHVWNEKVNIIQKLSSNIAQ GNDIGQSLVAIGFSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYPAV LIVMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFIGCSYVVILAKKQDYTSF KKLIHVPILGRLVKLYIHYLIVSEFAILMCNGYTLQQICNFFDHETNQSIAKTITCKMND ALISGNDIEEIIKQEEFLPDSLVLLFGVGADTKELSKKCVLLSQTLFYELNFKLGKAVVS IQPFCFILIGFCILAMYLKILMPMYASIQNI >gi|308165279|gb|AEHO01000024.1| GENE 9 5281 - 6255 1069 324 aa, chain - ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 7 315 6 302 313 209 38.0 5e-54 MDTSMYADELIKHAIKQRVSDIFILPTTDCYTIKFKTLVGLQIVENISANKGVEVINHFK FIAEMDIAEHRRPQVGSFIKENNGKNVFLRFSSVGDFLNRESMVIRLIYDMGDCHYFFPE QFEKLKQLSKKRGIIVTSGPTGSGKTTTMYQLIKQISSEKFVMTIEDPIEILEPDFLQTQ INNQAGIDYLSLLKAALRHRPDILVIGEIRDAQTAKVAINAALSGHLVLTTIHAKSTYQI IDRFLGLGIKMPELENALTAISYQRLLPTVKNTFSCLLDIADATKWRKSVSEHDTNFVDW QQNIENLYHKGVIDSDVFQSFLEG >gi|308165279|gb|AEHO01000024.1| GENE 10 6379 - 6711 505 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653335|ref|ZP_07906257.1| ## NR: gi|315653335|ref|ZP_07906257.1| conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 15 110 2696 2813 2813 120 66.0 3e-26 APEPTPEPMPKPAPVPTPKPEPTPTPEPMPAPTPAPEPTPAPEPTPMPVPTPKPELEPKP ESQPKPHLEPKSEQKKLPQTGSDEGYALGMAILGLSCLLTLADKKRKNKK Prediction of potential genes in microbial genomes Time: Wed Jul 13 02:58:58 2011 Seq name: gi|308165223|gb|AEHO01000025.1| Lactobacillus iners LactinV 09V1-c contig00055, whole genome shotgun sequence Length of sequence - 55852 bp Number of predicted genes - 54, with homology - 53 Number of transcription units - 23, operones - 12 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 6004 7393 ## HMPREF9243_0917 LPXTG-motif cell wall anchor domain protein 2 1 Op 2 . - CDS 5964 - 8381 2438 ## gi|325911561|ref|ZP_08173969.1| Gram-positive signal peptide protein, YSIRK family - Prom 8554 - 8613 8.1 + Prom 8511 - 8570 5.7 3 2 Tu 1 . + CDS 8768 - 10270 1296 ## HMPREF9243_1360 hypothetical protein + Term 10291 - 10339 2.5 4 3 Tu 1 . - CDS 10473 - 10697 156 ## Swoo_1071 ATPase central domain-containing protein - Prom 10849 - 10908 6.4 5 4 Op 1 . + CDS 10752 - 11414 513 ## COG1418 Predicted HD superfamily hydrolase 6 4 Op 2 . + CDS 11404 - 12558 1084 ## COG0499 S-adenosylhomocysteine hydrolase 7 5 Op 1 . + CDS 13232 - 14620 989 ## COG0477 Permeases of the major facilitator superfamily 8 5 Op 2 . + CDS 14623 - 15285 545 ## COG1418 Predicted HD superfamily hydrolase + Term 15321 - 15369 6.4 - Term 15309 - 15357 10.2 9 6 Op 1 . - CDS 15368 - 16114 918 ## COG1794 Aspartate racemase 10 6 Op 2 . - CDS 16138 - 17697 1443 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 11 6 Op 3 . - CDS 17732 - 18628 799 ## COG0642 Signal transduction histidine kinase - Prom 18774 - 18833 6.8 + Prom 18627 - 18686 8.6 12 7 Tu 1 . + CDS 18744 - 18941 113 ## 13 8 Op 1 . - CDS 18902 - 19639 764 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 14 8 Op 2 9/0.000 - CDS 19623 - 20669 706 ## PROTEIN SUPPORTED gi|229879751|ref|ZP_04499249.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 15 8 Op 3 20/0.000 - CDS 20689 - 21216 271 ## PROTEIN SUPPORTED gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase 16 8 Op 4 . - CDS 21200 - 21937 439 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 17 8 Op 5 . - CDS 21951 - 22580 496 ## COG3884 Acyl-ACP thioesterase 18 8 Op 6 2/0.000 - CDS 22680 - 23534 736 ## COG0313 Predicted methyltransferases 19 8 Op 7 1/0.000 - CDS 23537 - 23839 322 ## COG4467 Uncharacterized protein conserved in bacteria 20 8 Op 8 . - CDS 23906 - 24472 264 ## COG0470 ATPase involved in DNA replication 21 8 Op 9 . - CDS 24532 - 24762 271 ## LGAS_0374 DNA replication ATPase 22 8 Op 10 . - CDS 24779 - 25468 804 ## COG0125 Thymidylate kinase 23 8 Op 11 . - CDS 25480 - 25713 136 ## gi|259501362|ref|ZP_05744264.1| conserved hypothetical protein 24 8 Op 12 23/0.000 - CDS 25710 - 26309 537 ## COG0353 Recombinational DNA repair protein (RecF pathway) 25 8 Op 13 30/0.000 - CDS 26309 - 26638 587 ## COG0718 Uncharacterized protein conserved in bacteria 26 8 Op 14 2/0.000 - CDS 26684 - 28435 1886 ## COG2812 DNA polymerase III, gamma/tau subunits - Prom 28461 - 28520 6.8 - Term 28445 - 28485 7.2 27 9 Op 1 . - CDS 28617 - 29063 431 ## COG0590 Cytosine/adenosine deaminases 28 9 Op 2 . - CDS 29112 - 29726 580 ## COG2813 16S RNA G1207 methylase RsmC 29 9 Op 3 . - CDS 29772 - 30068 313 ## FI9785_1632 hypothetical protein - Prom 30095 - 30154 1.6 30 9 Op 4 . - CDS 30158 - 30400 152 ## FI9785_1632 hypothetical protein - Prom 30587 - 30646 7.0 - Term 30984 - 31020 4.0 31 10 Op 1 12/0.000 - CDS 31185 - 31637 581 ## COG3610 Uncharacterized conserved protein 32 10 Op 2 . - CDS 31639 - 32448 968 ## COG2966 Uncharacterized conserved protein 33 10 Op 3 . - CDS 32414 - 32803 361 ## FI9785_1641 hypothetical protein - Prom 32961 - 33020 6.8 + Prom 32824 - 32883 9.7 34 11 Tu 1 . + CDS 32973 - 33572 673 ## LGG_02225 hypothetical protein + Term 33578 - 33611 4.0 - Term 33566 - 33599 4.0 35 12 Tu 1 . - CDS 33605 - 34711 994 ## COG1316 Transcriptional regulator - Prom 34794 - 34853 8.6 + Prom 34542 - 34601 7.9 36 13 Tu 1 . + CDS 34849 - 36648 2022 ## COG1164 Oligoendopeptidase F + Term 36658 - 36701 6.3 + Prom 36682 - 36741 7.2 37 14 Op 1 10/0.000 + CDS 36763 - 37776 1148 ## COG2376 Dihydroxyacetone kinase 38 14 Op 2 9/0.000 + CDS 37789 - 38373 556 ## COG2376 Dihydroxyacetone kinase 39 14 Op 3 . + CDS 38370 - 38738 446 ## COG3412 Uncharacterized protein conserved in bacteria + Term 38745 - 38797 6.7 - Term 38731 - 38780 5.1 40 15 Op 1 . - CDS 38897 - 39577 331 ## Dhaf_4387 GP21 protein 41 15 Op 2 3/0.000 - CDS 39632 - 42271 1974 ## COG3421 Uncharacterized protein conserved in bacteria 42 15 Op 3 . - CDS 42274 - 44004 949 ## COG2189 Adenine specific DNA methylase Mod - Prom 44069 - 44128 6.6 - Term 44132 - 44171 7.3 43 16 Tu 1 . - CDS 44192 - 45751 1650 ## HMPREF0421_20066 perfringolysin O - Prom 45793 - 45852 7.2 + Prom 45868 - 45927 7.1 44 17 Tu 1 . + CDS 45953 - 46429 656 ## FI9785_192 hypothetical protein + Term 46451 - 46491 1.4 - Term 46496 - 46552 11.1 45 18 Op 1 25/0.000 - CDS 46558 - 48294 1927 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 46 18 Op 2 . - CDS 48294 - 48560 412 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 48613 - 48672 5.5 47 19 Tu 1 . - CDS 48688 - 48861 314 ## FI9785_1388 hypothetical protein - Prom 48954 - 49013 7.5 + Prom 48846 - 48905 5.4 48 20 Op 1 . + CDS 48993 - 51134 1585 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 49 20 Op 2 . + CDS 51189 - 51467 333 ## LJ0814 hypothetical protein + Term 51493 - 51538 8.2 - Term 51563 - 51614 7.5 50 21 Tu 1 . - CDS 51650 - 52531 1042 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs - Prom 52562 - 52621 11.9 - Term 52568 - 52636 4.4 51 22 Op 1 . - CDS 52681 - 53211 460 ## MPTP_1837 putative ABC transporter membrane-spanning subunit 52 22 Op 2 . - CDS 53091 - 53489 79 ## MPTP_1837 putative ABC transporter membrane-spanning subunit 53 22 Op 3 . - CDS 53482 - 54393 316 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 54426 - 54485 5.6 - Term 54618 - 54654 3.0 54 23 Tu 1 . - CDS 54671 - 55678 987 ## LJ1313 hypothetical protein - Prom 55782 - 55841 4.3 Predicted protein(s) >gi|308165223|gb|AEHO01000025.1| GENE 1 1 - 6004 7393 2001 aa, chain - ## HITS:1 COG:no KEGG:HMPREF9243_0917 NR:ns ## KEGG: HMPREF9243_0917 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: A.urinae # Pathway: not_defined # 1688 1871 933 1121 2257 75 29.0 2e-11 MTKGKQFLKTFLIEDGATYAVKTVVYEKQEYIDQDGSTKQKVESDLSNEHLAKIYTPTLA ETEKTAVNDAVNVQKNDTDNLLTPEEANEIKSKIIKNLKGKFGKDYDKEVENVQVITKKV ERNKNAFPEAYDANKLLGNQDTAEAGDAFIWYRDGGVVKITRDLTIRMKPAEVKPLEGNS VQAGATKIKLANFSTGAEGITLFGKDYKQSQLKLENGKWTIDSAHNAAGIQSVDKNADGT LTVTFNESLNQGTRIITQVTDGKDDKKPFRSEVKQAAVVARTDKAIYPKQVTAGVSQWNK DTKKLTDAAKKKVIADLEQKITGLNGNVKVTINDELISLGDTHFISVNATYPDGNKDSRS VQLILTDDVPAKVTMKATDNKVTVQNQVITVQANQAFSFQASAVDEHSHIVHDVRTENRP SWLNSNEGTAQSEYNAATHNQRNTKGSDKVPYVVTLSGTAPMKPGTHVFTVKTWDGANPE NSGSQQVTLKVEARPLTGATQTVEVNDTNALSKLTPESFVPQNVKTGLGNGVTYTWNNGK APTNATINTTGQTVEIQATFADHSPSTTIQGKLIVQDTKLAQLDVVAEKGAKVEHGTAVQ TVATNVQNFPGNPPTLTTYVNEPMIVHVKVKDNSNKITDAKLNGNSSFVQSDDREYQKNN RAKKGSAKDPYTITFTGTPTTKGTKNTRIDTWDGANTQGWVPLNIVTKEQAAQFDGQAVS GDTQRVEVNASTADLKPENFVSDATKALYKKATGGVTYTFTQGKLTNNTVTSGQGQDVSI TATFSDHSTRTITGKLVVFDQTNPTADITVSSTAPGQAPRIEDKNGVKEVHVYGTEDFTI TVQAQDNSGKVAEIALVQNGKPGSYPFPLTQQTSGVGSSAQPKVLTLTGATGKNTNNQSD STQLSEGAQWNNRAIQVKDGSNHTTIINLRVINHQQTTKYDPQEQAVTVKASTKALPEAK SAISNVKSLPNGTQYTWMNESPVTQSGKRQVKVTYPDGSSDTVDVTVTYQDDVAPTITFP TSHTYEGVAVTHFYRGEPVDITIHATDADSNMKKLWLSNGDMHRTERQIGEDIKGLNVQS QLNGKNASYHITGTVPTDFADRYTVGNNQAVGAKKFTRLFNAEDQNGNQSVIDNSTKFIY IVHERAEKYKASYGQLPITVGTKSASHSSIEFKDISKGRLFAGEVANSSYKAVEKTVDKP NGTTFTLMNPVDGVQIDSKTGKLTLQGQAKQVGQTIPIKVKVTYSDKSFDIVDVSMKIRD DIPADVQYEAGKGSQVNGTTVTVYANEAFEFKANVTDNTGIVYDAEYNGDNLSWLNNDKQ TYQAKYKQDTGGKRNTLGSKEHPYVLTFTGTAPNVKNTTHQGKIRTWDYQDANSGAESGF TLVVKSQSENYTDHSDLKSKLQGTSQDVEVNNEHPVQPNAEQSVSQTTKEMLKDKGVTYS WKTNHVPDTRTVGEKTGIVVVTFKDGSTLDISNAKVNVKDTVKPVITGWSISSDWKGDQP KIEDKNGVKEIHVYGTEKFTLTVRATDNSGIVQSIDVVHNGKAVTLGFTTKDTLTGTGTT ADPKQLTMIGATGPNIKDKDGYSNRTFKVTDAAGNSVEQQFKIVVHQQTTKYEATVAAGA IEKDYGATLTEEEIKAKVSVPQYPQGKTAYRVSLAGQLPSTTSAGNHQVAVQVTYPDGST DIVQVPVSIKAQPQKDAYELTYAPEQVEPGKSLTTQVPTLKKGNETIASQTGIVTSYSIA EDLKTKGYSVTNEGRLTIPASESATKVGQKLAIAVQVTYRDGTTENTIAQVSVTSPNKID RTNDKNAPIPSGYLRVTLQAGEGTIYQGDAQAKTYDVKVNTALESADYPQVKSQANYRPY QWSVAAGTVITETMDPDKNNQVTIESTATLKTAVTIEPRYGTEKGTIGETIIIGSPTFYK ENNGQVTTDVYQFLDRRMQYTLDKANDHVTIDASTGVIHYTPIASELNGKDEETVTIPVT VTYDDRSIDKVNVTVTIKRAT >gi|308165223|gb|AEHO01000025.1| GENE 2 5964 - 8381 2438 805 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325911561|ref|ZP_08173969.1| ## NR: gi|325911561|ref|ZP_08173969.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners UPII 143-D] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners UPII 143-D] # 1 804 1 804 2802 1499 99.0 0 MFGKNNKKMRDLEQREKVTYYGIRKFTVGVVSVAISAAFLLSGQTRYVLADEQPAIESRN NKQLVISKQEHADDGVNSKANNTQSVSKQATNTQLVTGQTDKISSGAQVKKAAPVAEKHS DKTQSAKEQTDSLADKTKANQSEKDEKGSTSKRMTEAQRKDLTQAVQSLKQQIEGLKTED KKAVEEIVAAYIGAQAVLSDVNVNQTVGHAALESLKRTQSLAKQLVTLSHFQSRSAQTGD KYDVSDILNRASAHLRQERSIGQMRGNREYNEKLLGSYTELGGGGSGYDLYTQIFRNKRN GLFGQDPNFDGMNISNAERDVWARVTPLEDGSGYSWEINFNLGRNEHQHPKYFFTVPKNQ KITKATVIYRENDDKYKTFAANGENALKTIFRDDIKRIEDTQAEFSDDLNKTPGDDGNFA SLVYPANNGKWVNQREITDPKMHPEWKDRLDQDAKRRDQLISKIKDNSQTVYFIQPHNGK NGYSVRFETKGRLERDKNTRKYYLAGFRSQEYNTYNLTLQMYGRLDSDISVIEKYPLHVR RNGRFYINQGKAINCDNVYRLKENGQKVDFSFWGDIDKAKREGKYKPGDFGKFSDAKGED LIDSGYMVLNGGKNGQDAHSDIGKLDLNRYLAGEHSDSWKDPSGKAKWGEGDLTWTVYDN KGHEHLLSDANTPGVNHFQFKRMQTVNGKTETELYNIMFVIKPKTPSLSQEERVGKRLPL KLTNAAGTYKNLVASNGTKGVPMVLYKNVNGRFEPMQEEYKETVTETTYNDQGKPTTIKK QVTKKRDLQVLANDKGEAVFKNIFD >gi|308165223|gb|AEHO01000025.1| GENE 3 8768 - 10270 1296 500 aa, chain + ## HITS:1 COG:no KEGG:HMPREF9243_1360 NR:ns ## KEGG: HMPREF9243_1360 # Name: not_defined # Def: hypothetical protein # Organism: A.urinae # Pathway: not_defined # 191 494 1 306 312 89 26.0 5e-16 MFELLPKSIQRKLNLIAYLLDHPTSPPSIHFLMDYLNITYPTLKHDISELNELFDQYFNI TITKTQISLKAFVPLSMAFFTYMLKQDLTIMSLINECFLQHINTFKALAQKIYISRSVMY HDLTQLKDFITNHYSALSITTHPVQITGPERIVRQFFTDYYFLGYNLSNWPFDQVSQSAI EDLMLLIAEKIPLIAFFSDHPILPIILAINVIRYRQGHLVEDIRPAYDHDACRRYLSDPI NHDHLHNLEVRLGITFSNEAVEQLLVNIISHQTSYDTHYMWQCAQTDPTLYQALITLKSN MLSLMHAFHIPSIDEEALDLFLLTAYNLCTFHGTDSNSFEEEIYQHEQDCLAVGTELERI DPHFLTQMQRILTTFQEQMHIPCNDTRTLQATWYYCHIFPQTLRQLKTPTQPIRLGLYTI NQLQRKHWAYEINLLFGDKIQLVSIHSPNSLLHLEANQVDALLTALPIELKQIKTRYISG YPSGQDVEWIYQLLFPSSDS >gi|308165223|gb|AEHO01000025.1| GENE 4 10473 - 10697 156 74 aa, chain - ## HITS:1 COG:no KEGG:Swoo_1071 NR:ns ## KEGG: Swoo_1071 # Name: not_defined # Def: ATPase central domain-containing protein # Organism: S.woodyi # Pathway: not_defined # 15 74 435 494 596 66 53.0 4e-10 MLQRLIFFLSLYHIIDEAYALTPNGQNSFKQEAIDRLITLSDELRNDIVIILAGYSQPMK KFLQANEGLSVVFS >gi|308165223|gb|AEHO01000025.1| GENE 5 10752 - 11414 513 220 aa, chain + ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 3 213 7 210 215 144 40.0 1e-34 MSLDDIKSFSKENMAFDPTGHDFLHAQRVAKLAQKIYTEDFKKDATDIGLYVVKAASYLH DTIDEKVTTDKKNRLIEIRILLSHENITTQAREDILDIIQHMSYADNIEHHYQLSNEGKC VQDADRLDALGAIGIARAFAYGGHAGQEIYDPQISVKEIKTHDDYRHHKSTTINHFYEKL LKLASLMNTRTGKLEAIRRTKYMRDFLSEFQMETGVKDET >gi|308165223|gb|AEHO01000025.1| GENE 6 11404 - 12558 1084 384 aa, chain + ## HITS:1 COG:PA0432 KEGG:ns NR:ns ## COG: PA0432 COG0499 # Protein_GI_number: 15595629 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylhomocysteine hydrolase # Organism: Pseudomonas aeruginosa # 100 269 132 293 469 64 31.0 4e-10 MRHNEYLLDKSYFEKVATLFNKGQSNPKKILVVEHAVINSLDFIDYLCEHYEVYFIPKPK SIDRKVLKHLSKTCTILDVSRKELADVDTPNWIKKIVGKDTFAIIDIGGYFVPRLSDIQK QFKGQLVKIIEDTENGYQKYEDKLSNNSISVPILSVARSSLKIEEDFLVGHEIVVKSEIF LADYGTTLLGKKALVIGYGKVGSSIADNLRKRGAIVIVADKRAIRLANALAHGYQITNDI YTELIDIDIVYIANGEKSIDALQLKKLDLKHTLYSFSVTSADDTFKNSQIINELPHYGHN GGYRILKTKSNKTVILANSGNAINFTYSISTLASYVQLTQAEMAVILQKDISGEENQGIV ELNENDREKIAKEWLVEIFKFVKS >gi|308165223|gb|AEHO01000025.1| GENE 7 13232 - 14620 989 462 aa, chain + ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 443 1 436 454 221 36.0 3e-57 MFQEKHSKLLSAIISIGLLSFLGIVVETALNITFPQLTKYFSIPINQVQWLTTGYMLVST SLIPLGSFFLKRFRVVTLFRVSCLSFLVGTLIASFSNSFNLVLLGRLCQGIADGIALPLI FAVILHQVPKKKVGTFMGIGSLVIALAPAVGPIYGGIIQDTLNWHFLFIILIPMIIVTWL LGELSIEQSSPIHYVPFDVRGGICLTIFLSTALMFIVNLTANSSSLKFNLILLGTVFFSG LLFLLNEKNKSHKLLELALFKNKRFLQLLSAFFLLQFSSLSMSYLIPNVLQILFDQSPGL VGFLVAPAAVIDAVLSVVAGIIYDKTTPSLPIISGCTIIGLTFLGANLFTPSIGGLVLIY MLFMVGLSFSYSNIMTYSLSKLPAGLVNDGNSIYMTVQAYSGAVGIAISSSVISLLQKQQ GSIISGTKLGLSINFLILFFVAVFTISLCLIALRNKVIKGDK >gi|308165223|gb|AEHO01000025.1| GENE 8 14623 - 15285 545 220 aa, chain + ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 3 213 7 210 215 143 39.0 2e-34 MSLDDIKSFSKENMAFDPTGHDFLHAQRVAKLAKKIYTEDFKKDATDIGLYVVKAASYLH DTIDEKVTTDKKNRLREIRIILSHENITTPAREDILDIIQHMSYADNIEHHYQLSNEGKC VQDADRLDALGAIGIARAFAYGGHAGQEIYDPKISVKEIKTHDDYRHHKSTTINHFYEKL LKLASSMNTRTGKHEAIRRTKYMRNFLSEFQMETDVKDEC >gi|308165223|gb|AEHO01000025.1| GENE 9 15368 - 16114 918 248 aa, chain - ## HITS:1 COG:L92665 KEGG:ns NR:ns ## COG: L92665 COG1794 # Protein_GI_number: 15674208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Lactococcus lactis # 1 229 1 230 240 189 42.0 5e-48 MEHFFSIIGGMGTIATESYVRLINSRVKIKCDQDYLNYILVNDAQIPDRTAYIKDHTQPD FFPALRSDVLSQAQLKPDFFVMPCNTAHYYYNELASLTDVPFLHMMRIAIHNFIDNYPNE KKIGLIATEGSIYDHLYADELSKVGRQVEFGGPEIQPLVNELIYKNIKEKGIVDAQLFYK ILQLMHDKYGCHVILLGCTELSLAQEKASDHPYNVIDPQSIIADVTIDVALKIRQGIEPQ QALKKYMY >gi|308165223|gb|AEHO01000025.1| GENE 10 16138 - 17697 1443 519 aa, chain - ## HITS:1 COG:L53929 KEGG:ns NR:ns ## COG: L53929 COG0769 # Protein_GI_number: 15673788 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 35 514 37 483 483 339 42.0 6e-93 MSESSISLNTCILILKEHHLLKSCATQDVVSTKMDYISYDSRDIKTNTLFFCKGKGFRPT YLSYAKENGAICYVAEQPYPEGKGMHALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGT KGKTTSAYFLKGILDKLNGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAV DNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVN SRKCIINAMTDHFDEIYAAATTTTNPDSIYLFARNDYDNPDLKRPIDFRFASVETDMCET KFKLYSETDAARNIPVEGNYSLKMIGDFNEINATAAIIGAGLAGVNYQDCYDGIKNVTIP GRMETLTTANHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFS ESLSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDD DVVLICGKGADPYQKIRGVDTPYPTDIKVAQEVINKLEN >gi|308165223|gb|AEHO01000025.1| GENE 11 17732 - 18628 799 298 aa, chain - ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 32 288 128 379 380 155 36.0 7e-38 MRRYHQFQMYHIIKELHYIADGHFNYRIPFKFKGPLQDVVDSINALVDSTCMAISEEKAV EKSKDELIANLSHDLRTPLTSIIGYMSLLKMHQNSMLPAQRQEYLNIVFDKSLQMKSMTN DLFEYATLNFSHDKKLELEQIKISSLIEQIAAGFALEAEKKQIDIKTSCEPQDLEIAVDV KKIVRMFNNLISNAVKYGVGAKNIYVSVKKISNDMVQIIVSNDGQAIPQDALGKLFDRFY RVEESRSPKTGGSGLGLAITKTIVEMHHGTIFCTSNQKLTSFIIDLPINIQKNNLDVL >gi|308165223|gb|AEHO01000025.1| GENE 12 18744 - 18941 113 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPSTNFELPKISKFNNTNSDKFNKHNNPNVTTASNINRIFLFYLEKLLLHHNYYISILYP TPHTV >gi|308165223|gb|AEHO01000025.1| GENE 13 18902 - 19639 764 245 aa, chain - ## HITS:1 COG:lin2516 KEGG:ns NR:ns ## COG: lin2516 COG0745 # Protein_GI_number: 16801578 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 20 245 5 231 231 214 48.0 1e-55 MNCTNNNFYERLKGKKLVKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFRMD PSITCIILDIMMPEMSGLDLIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPF NPLEVMARIRSLIRRSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGIL YLLASHPGRVFSANEIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVG YKIEI >gi|308165223|gb|AEHO01000025.1| GENE 14 19623 - 20669 706 348 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229879751|ref|ZP_04499249.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Slackia heliotrinireducens DSM 20476] # 8 342 440 781 781 276 44 1e-80 MTQKDIRILAYESSCDETSTSIVKNGTEIESLIIATQIKSHQRFGGVVPEVASRHHIEVI TQITKEALAQANCTWKDIDAIAVTYGPGLVGALLIGVSAAKAASMATNIPLIGVDHIMGH IMAAQLKDTIEYPALALQVSGGHTELVLLKSPIDFEIIGDTRDDAAGEAYDKIGRVLGVN YPAGKTIDTWAHQGQDTFKFPRAMLEDYDYDFSFSGLKSAFINTCHHADQINQNLDKYDL SASFQAAVVDVLAYKTMRAIKEFKPKTFILGGGVAANLGLRERLNREIAAINQDHQLKVI MPDLKLCGDNAAMIGAAAYNLYVAGQFSDLNLNADPSLELPYSDELYK >gi|308165223|gb|AEHO01000025.1| GENE 15 20689 - 21216 271 175 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase [Lactobacillus acidophilus NCFM] # 1 175 1 178 190 108 38 5e-23 MLRKFKRLFCKSDINMTFNPMKVKINGLQYYLRKADSSDIVNILDLQYQLCPRPLCWNIK YLTTEITNPENIYLVLYCRQQLAAVLGLKMSSDEGHIAFIGVKLEYQFQGIGTLLLQQAI TLVQNNYVDKITLEVNVKNVHAQRIYRKMGFIPDSIRKNYYATLQEDAINMVLKL >gi|308165223|gb|AEHO01000025.1| GENE 16 21200 - 21937 439 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 42 235 1 191 380 173 47 8e-67 MKVLSITTATDHLSVALTDGEQIIAEKNELGMHNHAERLDPLIDELLKQNQLTLQEIDRF AVAQGPGSYTGLRISITTAKMFASILNKPLVGVSTLKALAQGVTSNREILISELDARNLN FFAGVYLKEDGQLKQLLADGHYNLSKLLDKVAQLELDYPIVFVGSDIANYKSEIEAFFSP SQYRQAAAEENILHATNIGKLAVDEIAQDPDLFLPRYLRRTQAEMDWHRKTGKDFASDSE YVEEV >gi|308165223|gb|AEHO01000025.1| GENE 17 21951 - 22580 496 209 aa, chain - ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 19 205 57 239 245 87 28.0 1e-17 MDTMSHLLDPCIKIEHAGWVVVNYQFDINKLPKFDDQITIKIDLCYYNRFFAYIKFLVKD LQENELVTINSQWILFDLLSRRMIELDSAKVGISDAQKIAKLPHFDRIKVLEGQEDFQRS YRVMYSDLDVNHHLTNGRYFDWIVNTIPRDFLNSHSMVAASIQFRKEILYDQSALVTLTW NADHSVSYHTIKRDEQILTVAKISWVSDK >gi|308165223|gb|AEHO01000025.1| GENE 18 22680 - 23534 736 284 aa, chain - ## HITS:1 COG:SPy0406 KEGG:ns NR:ns ## COG: SPy0406 COG0313 # Protein_GI_number: 15674543 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Streptococcus pyogenes M1 GAS # 1 282 1 285 287 264 48.0 2e-70 MQRQSSFNDETQGCLYLVPTPIGNLEDITLRAKRILMEVDYIAAEDTRTSGILLEKIGVH NKMISFHKYNSKQRAPELIALMKEGKKIAEISDAGMPVISDPGFILVQECIKNDIAVIPL PGPSAFATALIASGFDAQPFIYYGFLSRKATEQTAFFNKMATFTGTSIFYEAPHRLLKTL TNLQNVVGENREIVCARELTKIHEEFIRGSIGEITNYFAENAPRGEFVILLSPAKEEETI SIDQMLVEVNQAVASGMSNKDAIKNIAKKYNISKNELYDKYHQK >gi|308165223|gb|AEHO01000025.1| GENE 19 23537 - 23839 322 100 aa, chain - ## HITS:1 COG:SP0937 KEGG:ns NR:ns ## COG: SP0937 COG4467 # Protein_GI_number: 15900817 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 5 86 24 102 105 64 39.0 5e-11 MTNTVENLEIEMLDILKENTELKVENQLLREKINKLDHKENNGSVKPQAGLKSLRNIYDS GYHICNMYYGSHRDQGEDCMFCLDILDNFVNHGNLSNRKK >gi|308165223|gb|AEHO01000025.1| GENE 20 23906 - 24472 264 188 aa, chain - ## HITS:1 COG:SP0936 KEGG:ns NR:ns ## COG: SP0936 COG0470 # Protein_GI_number: 15900816 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Streptococcus pneumoniae TIGR4 # 6 185 104 293 296 67 26.0 1e-11 MAKKPVEGSRRFFIVKDASSLTLSANNALLNLLEEPVAPVVTILIANNENTILPTVRSRT QIIHFAPTKQKSSVTEDLLTYGLNEDEIADMGDVSNLEQEITYLYQELCQQNELSIVRAY KISKLAAKSNLQKFVFYKLAKIAMEKIEKNKDYLFAPKLLQLLMECDKMRTNNVSFYNCL NYIVLSFN >gi|308165223|gb|AEHO01000025.1| GENE 21 24532 - 24762 271 76 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0374 NR:ns ## KEGG: LGAS_0374 # Name: not_defined # Def: DNA replication ATPase # Organism: L.gasseri # Pathway: Purine metabolism [PATH:lga00230]; Pyrimidine metabolism [PATH:lga00240]; Metabolic pathways [PATH:lga01100]; DNA replication [PATH:lga03030]; Mismatch repair [PATH:lga03430]; Homologous recombination [PATH:lga03440] # 1 76 1 76 285 122 65.0 6e-27 MVNLSNVDQQQTKILFDAYLHDKIAHAYLFIDPTGYTALATAYWLICLLNCTGEHKPDAN CNNCQRILNGNHPDVF >gi|308165223|gb|AEHO01000025.1| GENE 22 24779 - 25468 804 229 aa, chain - ## HITS:1 COG:BH0042 KEGG:ns NR:ns ## COG: BH0042 COG0125 # Protein_GI_number: 15612605 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Bacillus halodurans # 16 224 1 208 210 199 47.0 2e-51 MGAFFAFYIKWQGWCVMKGYFISFEGPDGAGKTTIINELVQQLSSKTIAPILVTREPGGS KISENIRKIILDPKNKEMNAETEALLYAAARSQHVIETIIPALNAGKIVFSDRFIDSSLA YQGIGRDLGIDEIKQINEFATRHITPDLTLFFDIDPLKGLQRIQKVRPENEDRLEQENNL FHQKVYTGYKQLLSAYPERIKRVDAELSIAEVVSQSVKILEEYMPHMFK >gi|308165223|gb|AEHO01000025.1| GENE 23 25480 - 25713 136 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501362|ref|ZP_05744264.1| ## NR: gi|259501362|ref|ZP_05744264.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_02750 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0019 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_1147 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0035 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0019 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_1147 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0035 [Lactobacillus iners SPIN 1401G] # 1 77 1 77 77 119 100.0 7e-26 MKNKEKIKELGDANLINKISELQIYLSNQRILNQTTVDLSEENRILDLILHAKYHFLYDE AKYRHARSKYSNSVITQ >gi|308165223|gb|AEHO01000025.1| GENE 24 25710 - 26309 537 199 aa, chain - ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 199 1 198 198 264 61.0 1e-70 MQYPLPIAKLIDNFMKLPGIGEKTATRLAFYTLDMQDKDVEDFSQALIEAKKQIHSCSIC GNITDTDPCEICSNANRDQTIMMVVEQAKDVMAFEQMGEYNGLYHVLHGVLSPMDGIGPE EINIKNLIIRLQKSDEIREVILALNSTPEGESTAMYLGKLIKPSGIKVSRLASGLAVGSD IEYANSITLKRAVQGRISL >gi|308165223|gb|AEHO01000025.1| GENE 25 26309 - 26638 587 109 aa, chain - ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 12 108 1 97 99 92 50.0 2e-19 MGRMPNLGGMGMGNMQNLIKQAKKMQQQMEAERESLNQTEFVGKSADDMVIATLTGDKKV KDLKIAPEAIDPEDPDMLQDLIIDAINKAISEVDVATEKTMGKYTKGLM >gi|308165223|gb|AEHO01000025.1| GENE 26 26684 - 28435 1886 583 aa, chain - ## HITS:1 COG:BS_dnaX KEGG:ns NR:ns ## COG: BS_dnaX COG2812 # Protein_GI_number: 16077087 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Bacillus subtilis # 1 579 1 563 563 400 41.0 1e-111 MAYQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAK AINCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYY KVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISN DQLVARMKFILDQDKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAI TGYADQVKIEALFLDLLNRKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDT TVTFLSANYLEQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQDINAT VSQTDAAEIKQLQTKVEQLSLQVAELLKKANTSAIAKPSEILTEIKDKVRPTKAVNQNVA TLKKKKTGLQLSTEANLKKVNAVLSQATKQDLNTIKDVWQQDMSSLLEVSQRALLEVLEP VAASPTQVVLKCKYEFWFERAMADENFISQLENNLEKLTQHKYQIVLVSENSWTTIRQEY VKKYKEHLIIAQKELASNPNEEVIKKAKSLFGDLVNVKDDSDL >gi|308165223|gb|AEHO01000025.1| GENE 27 28617 - 29063 431 148 aa, chain - ## HITS:1 COG:BH0033 KEGG:ns NR:ns ## COG: BH0033 COG0590 # Protein_GI_number: 15612596 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Bacillus halodurans # 1 147 9 154 159 160 47.0 1e-39 MKLAFLEADKAEQQGEIPIGAVIVDAEGNLIGRGYNRRELDEDATRHAEIIAIQEACKNL NSWRLIDCSLFVTLEPCPMCAGAIINARLKNVYYGAFDPKAGACGSVVDLFAFTKFNHHP QIFGGLYREQAAQQLKKFFKNIRQQNRI >gi|308165223|gb|AEHO01000025.1| GENE 28 29112 - 29726 580 204 aa, chain - ## HITS:1 COG:SP0841 KEGG:ns NR:ns ## COG: SP0841 COG2813 # Protein_GI_number: 15900728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Streptococcus pneumoniae TIGR4 # 5 204 2 196 196 197 53.0 9e-51 MENETQMYFATNPDAKHDEHLINYQLDELSLQFYTDAGVFSKTRVDYGSCVLLKVLKQLE ISGNILDVGTGYGPLGLFAAKLWPKSRVTMIDVNERALALAKRNAQLNEIDNVNIFSSDC YRNLDEQEQFGLILTNPPIRAGKQVVDDILQNAKKYLQVGGILLVVIQKKQGAPSAKKCL EQTYGNCEILKRDKGYYILKSVKK >gi|308165223|gb|AEHO01000025.1| GENE 29 29772 - 30068 313 98 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1632 NR:ns ## KEGG: FI9785_1632 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 3 94 114 205 208 118 59.0 8e-26 MKQSYRFFSEDQRITVKSNYASIAEGVDPFPVEAQIIPYNKKDLRAADDHYQKAYVAIYT ATYKKNWQNGLGLHAGHVFIKYYLIRVPDRSFIKIIEK >gi|308165223|gb|AEHO01000025.1| GENE 30 30158 - 30400 152 80 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1632 NR:ns ## KEGG: FI9785_1632 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 70 1 70 208 80 48.0 3e-14 MHISWNLLGIFVWIILVIYVFFIIHNIRQRHLKMIIQKRRRFDAKTAIIDVIEILIFILA CSYMSVITFLIILIFLISRS >gi|308165223|gb|AEHO01000025.1| GENE 31 31185 - 31637 581 150 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 137 7 137 152 108 45.0 3e-24 MPYWLDIIINFTFAWIASVGFALTLNVPKRALIYCGHSGALGWMIYWFGIHAGWGRLTSN FLGALLIGIVGIILAKFKKCPVTVFNIPAIVPLVPGVPAYQAVRAMVIGDLASAQNLILR VFIVTIAIAMGFLLAQLVGEIWFKIHKVYH >gi|308165223|gb|AEHO01000025.1| GENE 32 31639 - 32448 968 269 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 18 266 3 249 250 184 42.0 2e-46 MKKRVVDLKLTKQIVTENQYNDQVLDTCLKAGRLMIESGSEMYRVEDTMLRISRNANIPA ARCFTTPTGLFMSLGEHSKTQMTLIKNRNIDMTVVDKVNELSRAFADKKITLDQLHNKLC DLADHRQTFSNLMQIFGATILSCTLMVLFMDDYDWIDFPVAAIVGGSCYGIYLWIKKYSR VRFLGELVTAMIMGAMTIGICHIFPSLSMDNILIGSLMALVPGVPITNALSDLFRGDLVS GTVRAIEAFLTAVALGGGIGLAIKFLGGF >gi|308165223|gb|AEHO01000025.1| GENE 33 32414 - 32803 361 129 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1641 NR:ns ## KEGG: FI9785_1641 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 6 121 2 117 127 95 40.0 5e-19 MTNKNQKHRFFPVIYATFIGIFAFIAVINVCKHTFQITTTHSLLISSLVALIFYISAYIL AYISNQIKYLVAKHCLSANDLAKITGLKSDYFPIHNNKLSLIVAKRKWLAILCKLREYDE KKGGRSKID >gi|308165223|gb|AEHO01000025.1| GENE 34 32973 - 33572 673 199 aa, chain + ## HITS:1 COG:no KEGG:LGG_02225 NR:ns ## KEGG: LGG_02225 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 110 198 243 331 332 144 77.0 3e-33 MGVISLKHKFIAIMTAISLLILNIAIQPVLATQVTNKINISSALVRNTMKVQLMEQDFQL KQKKQADQAKLKAIKIKQQQWNQMEQKQAIQRAQKAKQAIAQAPKPQIRTVNKGTFKVSF YDPAVLGSRLGYHGVAANLNIFPRGTRLRITLSNGMVLYRVVNDTGSFAYSNPRQLDVAM PNSQIPAAGILYASVEVIY >gi|308165223|gb|AEHO01000025.1| GENE 35 33605 - 34711 994 368 aa, chain - ## HITS:1 COG:BS_lytR KEGG:ns NR:ns ## COG: BS_lytR COG1316 # Protein_GI_number: 16080618 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 74 318 61 298 306 180 41.0 3e-45 MMKISNKDKLQRNCVLAKEINRQPAKLVFLKLIGLVITIMLGMCVAVGTRIYFTMASSVR QANQGHVMAESSFIAQQKPFSVLILGVDQGIEGRHDQGNSDTMILVTLNPKKGVATMTSI PRDLLADIQPSKKFYMFRVNSAYQLGGNRAAVKTVSTLLNVPVNNYMEVNMKALKNLVDA LGGVDVKVPFSFTYNTKFVKGMQHLNGNAALDYVRMRKEDPQGDYGRQKRQRKVIEQLIH KGMTLKSLNNYRKILNVFAKYVKTNLTFNDMLSVAFKYRSCSHHIVQDYVHAHDAWIGGA ALQVASTSELQRVSDLTRSNLNLKKQKLHNEETRQNKLQKHLKWKKKDPFENYIIYERHS KTKVWTGK >gi|308165223|gb|AEHO01000025.1| GENE 36 34849 - 36648 2022 599 aa, chain + ## HITS:1 COG:BS_yjbG KEGG:ns NR:ns ## COG: BS_yjbG COG1164 # Protein_GI_number: 16078219 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Bacillus subtilis # 4 598 11 605 609 539 47.0 1e-153 MATPYRKDVEVDLTWDLTRIFKNDQEWEKEFAKIQQEIAELTTLKGKLSTSGTDLYENFS KILKVSREIEKVYVYSTLSSDQDTNNSHYLGFVARVQSLYNDFSAATAFVDPEILDIPEK TIEQFKKDEPRLAEFAHRLDTLNQKRKHTLSSDQEKIIAAASDALNTSENTYNILTNSDM EYGYVEDEDGNTEQLSDGLYSNLIQSQNREVRKQAFDTMFSTYGQFENSLASTLSGVVKA HNYNAKMHKYHSAREASLNENGVPTVVYDTLLAEVNKHINLLHRYVALRKKLLKINDLQM YDMYVPLTGQPSDHYDINKAKEIALEALKPLGEDYLKVVKHIFNDRVIDVVETKNKATGA YSGGSYDTDPYILLNWEGNLDSLYTLVHETGHSVHSWYTNHSQKYIYSNYPIFVAEIAST TNENILTEYFLKNITDPKTRAFILNYYLDSFKGTLFRQTQFAEFEQFIHESDAKGEPLTA EILNQFYGDLNQRYYGSSVTPGGQIAKEWSRIPHFYYNFYVYQYATGFAAATALSNNVVH GDKKQLEDYLNFLRSGSSDYPTEIMKKAGVDMTKADYLENAFATFEKRLNEFESLIGKF >gi|308165223|gb|AEHO01000025.1| GENE 37 36763 - 37776 1148 337 aa, chain + ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 21 337 1 315 316 406 63.0 1e-113 MKEDIFMKKIINDPQNLVDEMVQGMTRAYSSIVEQIPATNAIVRSDKASMQEKVGIVSGG GSGHEPTHAGFVGKGMLSAAVCGQVFTSPTPDQIYEAIKAVNHGKGVYLVVKNYSGDVMN FDMAKDLAAMDDIEVKSIVVDDDIAVENSLYTQGRRGVAGTLFMHKVLGAAAQNGASLDE IDELAHAILPNIKTIAVALSAATNPMTGQPGFKLADDEMEYGVGIHSEPGYRREKIKSSK ELVEELITKLNEELHFDSNNKYAMLVNGMGATPLMEQYVFTNDVLNKLDSFNITPVFMKI GNYMTSIDMAGISLTIFEIKDDKWLEYLNYPVQTIAW >gi|308165223|gb|AEHO01000025.1| GENE 38 37789 - 38373 556 194 aa, chain + ## HITS:1 COG:L46694 KEGG:ns NR:ns ## COG: L46694 COG2376 # Protein_GI_number: 15672231 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 10 191 9 191 192 179 51.0 2e-45 MELDATQLKKWMELFSKKIAANEKYLCELDAPIGDSDHGFNMKRGMDAVVTKLNSAPDDL TICFKTIAMALISTVGGASGPLYGTAFLEMAKESQKSNNIVDLLEAALAGIKKRGGATIG DKTMVDVWSVIIEAIKQDTLTTEKIEAAVLATKDMIAKKGRASYLGERSINHIDPGSQSS GYLFESLLEVLNNK >gi|308165223|gb|AEHO01000025.1| GENE 39 38370 - 38738 446 122 aa, chain + ## HITS:1 COG:BH3395 KEGG:ns NR:ns ## COG: BH3395 COG3412 # Protein_GI_number: 15615957 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 3 122 6 125 128 119 55.0 1e-27 MSLGITLVSHSPKIVAGLSDLLSQVAKDVSITIAGGTEQNDIGTSMDKIMTAFEENKADE ILAFYDLGSAKMNLEMAQEFANKKIHLYDVAFIEGAYTAATLLQAGVDLSTIEAQLVPLK IK >gi|308165223|gb|AEHO01000025.1| GENE 40 38897 - 39577 331 226 aa, chain - ## HITS:1 COG:no KEGG:Dhaf_4387 NR:ns ## KEGG: Dhaf_4387 # Name: not_defined # Def: GP21 protein # Organism: D.hafniense_DCB-2 # Pathway: not_defined # 1 223 1 226 228 161 46.0 2e-38 MNIYIDESGSINNTLDKNSDFIITLVVPTNKKQLEYTYKRFVSNNYKILKKLDKTNKMFF NNKFQELKGSQFNKPMKQKFVKFFAKKKHFEIYYIRIENYKLSDDFCKNTARAFNYVIRL ALQYLIKNNFLEQDNIHLQLDERNEKTETIHFLENYLNTELSLGGTTKGKFTVNYFDSSN NKFIQIADVFSNLFYSQLHTGGYGDEIQLLKNNDILKFVFVFPLEY >gi|308165223|gb|AEHO01000025.1| GENE 41 39632 - 42271 1974 879 aa, chain - ## HITS:1 COG:MYPU_3950 KEGG:ns NR:ns ## COG: MYPU_3950 COG3421 # Protein_GI_number: 15828866 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycoplasma pulmonis # 1 879 19 890 897 966 60.0 0 MSDQFLYEKLDVLKETNQLSAMPDIIEKGLSKNIVLREYQKEAFQYFVTYFENDGLHKNK QIHTLFHMATGAGKTVMMAGLILYLYTKGYRKFLFFVNQTNILKKTEENFLNTLSSKYLF ADELSYLGMKIKVKKVDRFSDIPLDDDIELLFTTTQKLHMDMWDAKENAPTCADFENDKI VLISDESHHINSNTKKKKTSTEEDAEKSWEYTVNRVFYSNKDSILLEFTATADLKNENVL EKYTDKIIYNYPLARFRESGYTKDFQNFATDTSLWDRTLIALILSEYRRYLFADLKLNIK PVIMLKSRKIKESEAFHDEFFKRMQELTGDEIKALQSANIPLLSKAIAYFEKKDDTLENL EHSLKNSFTEDNTIIMNGSSDDNDANQIKVNSLEDKDNHIRLIFAVDMLNEGWDVLNLFD IVRLYDSRQGSGKAGKVGSYTIKEAQLIGRGARYCPFTYDGEEELKFKRKFDNDLTNDYR ILETMLFHSLNDSRYIAELKQALIATGLQPKDAITCEYHLKKDFKSSDFYNKTYVYSNKR LPRDRNEIKTVEPSLKTKIYYYTQKSLSGNIVGLFDQIKQENSSLNKQVNSSKTTLKNIY FKDVDYNILSGAAACYPELRFNVLKDKYPHVSSLKEFLTADDFLGNSMLEITQTSGHLSG KDIFEACKIALGKVANYIANIKQEFVGSKEFQPHMLKSVLHDKKIYLSSITENGGHGDSQ NDCINEDYRLNLVDEPWYVFNDNYGTSEEKQLVKYFKTVIEPKLKEKNLEYYLIRNERIP ELAIYSFDAGERFEPDFLLFIKKKEMSEVKTLQAYIEPKGTQLLMQDAWKEQFLSEIKDE HQINDLLGSGYTVLGLPFFNREKRMAEFSQAIDELVDQI >gi|308165223|gb|AEHO01000025.1| GENE 42 42274 - 44004 949 576 aa, chain - ## HITS:1 COG:MYPU_3970 KEGG:ns NR:ns ## COG: MYPU_3970 COG2189 # Protein_GI_number: 15828868 # Func_class: L Replication, recombination and repair # Function: Adenine specific DNA methylase Mod # Organism: Mycoplasma pulmonis # 2 319 3 302 565 408 72.0 1e-113 MKNIFDTVADLLLTNDKYKAEDGKLLKAVVYSDVMAMNETLLTLLLSNENVKETFFKDVQ GTLVFDKQKFAWFMESKEFLPDSYTSYTNKIGLTHNGNFISQTNDVVLDFPYKDCVLEGG QDKDDQKRSEIFYNETIASDEISRMLAPKVFTNAKRYTAVGEKDLTGELDPDTIQVKEET GITFNDDDNLIIKGNNLIALASLLKRYEGKVKCIYIDPPYNTKNDSFNYNDSFNHSTWLT FMKNRLELARKLLREDGTIFVQCDDNEQAYLKVLMDSIFGRNNFQAEIVWVLEGASGYKS LVNNYVRGHESILFYSKSNYFNFNKIYLPYSEKQIKRFSKLDDSGRRYKPITKTRRLYLD EAKGVPLTDVWTDIASFQTIVNSPERTGFDTQKPEKLIERIIETLTTTHDLVLDFHLGSG TTAAVAHKMGRRYIGVEQMDYIQDITVERLKKVLEGEQGGISKAQNWHGGGSFVYCELKE DANTLITTIQNATEDIIESVKASIYADEHIVPYLTKQELADADKDFENLTLEEKKQALIK LVDKNKLYVNASDMDDESYHVSDDDKKFTKSFYKGV >gi|308165223|gb|AEHO01000025.1| GENE 43 44192 - 45751 1650 519 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_20066 NR:ns ## KEGG: HMPREF0421_20066 # Name: pfo # Def: perfringolysin O # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 34 519 62 541 541 518 54.0 1e-145 MNQKGLRKIIYASSLALLELSLVTATKPAQAATNTEPKTAIVAKHNTEEPMSVNDYLLGL DYDSQAVLTRQGDMLTNHFAHETTTDNNGRFVVVEKQKKTISNSTSSISVTTANDSRVFA GALFKADNNLIENNPTLVSLRRAPITVSVDLPGMTDNTNAKLVAHPTTSSVNSAVNDLVE KWIAKDSVNHAIPARIEYDTTSAQSMDQLKVKFGADFAKISVPLKIDFDAIHNGEKQASI VNFKQIYYTASVDAPENPGDVFDAHVTAKDLQKRGINSKTPLVYVSSVSYGRSMYIKLET TSKSDKVQAAFDAAIKGVKIAPNSEYDHILKNTSVVAVILGGNSGDATEVVRGDINTLKE LIQKGSKFDSSNPGVAVSYGTSFLKDNQVAVINNTADYIATKVTEYSNGKLILNHKGAYV ARFFVDWDEVSYDSNGREVLTHHTWADNGRGRTSGFSTEINLKGNVRHLNVKIQECTGLA WEWWRTIYDEQDLPLAHLRQITIWGTTLRPKHKEEVKND >gi|308165223|gb|AEHO01000025.1| GENE 44 45953 - 46429 656 158 aa, chain + ## HITS:1 COG:no KEGG:FI9785_192 NR:ns ## KEGG: FI9785_192 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: Pyrimidine metabolism [PATH:ljf00240] # 1 158 1 158 158 261 77.0 4e-69 MAEQKTVYFGAGWFSDVQNRAYKDAMDALAANPTINLKDSYIPLNNQYKGIRVDEHPEYL HDKEWAQATYNGDLIGIRSSDIMLGVYVPDEEDVGLGMELGYAQGQGKYILLVIPDEFYG NPINLMSWGVADNIIPMSKLKDFNFNQPRFGFYDGAVY >gi|308165223|gb|AEHO01000025.1| GENE 45 46558 - 48294 1927 578 aa, chain - ## HITS:1 COG:lin1002 KEGG:ns NR:ns ## COG: lin1002 COG1080 # Protein_GI_number: 16800071 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Listeria innocua # 1 568 1 566 572 702 62.0 0 MTEKLKGIAASEGIAIAPAYLLVEPDLSFSKSKVTDLEAEVARFKEAIDESTKELEAVRD QAKKNLGEEEAQVFDAHLLFLSDPEFSGAIENEIKNNSINAEAALDAISNNFISIFESMT DNAYMQERAADVRDVSKRIMAHLLGVTLPDPATIDHEVVVIAHDLTPSDTAQLNKKYVKG FITDIGGRTAHSAIMARSLEIPAVVGTNTITQDVNNGQMVIADGLDGNVLIEPSAAEISS FDEKGRKFAEQKAEWKKLKDQPSQTADGKHFTIAANIGTPDDMKGVLENGAEAVGLYRTE FLYMDSSDFPTEDAQFEAYKAVIEGMKGKQVIIRTCDIGGDKHLDYWDLPEEMNPFLGLR AIRLSMHNKDIFKTQLRALLRASAYGKLGIMFPMIGTLTELRKAKAILAEVRAELEAKNV KIGEDLQVGMMIEVPAAAILADQFAKEVDFFSIGTNDLIQYTMAADRGNDGVSYLYQPYN PSVLRLIKNTIDGAHQNGIWCGMCGEAAGDSVMFPILLSMGLDEYSMSATSILRIRSLMK KISLEDVKELANEACYVSETFEDNAKLVAETLKKLNIN >gi|308165223|gb|AEHO01000025.1| GENE 46 48294 - 48560 412 88 aa, chain - ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 108 71.0 2e-24 MEKREFKVIAETGIHARPATLLVQAASKFSSDINLEYSGKSVNLKSIMGVMSLGVGQGSE ISISAEGDDEKEAIDAIADTMKKEGLAE >gi|308165223|gb|AEHO01000025.1| GENE 47 48688 - 48861 314 57 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1388 NR:ns ## KEGG: FI9785_1388 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 56 1 56 60 66 55.0 4e-10 MDYQEILEKIVNGELAEYKVEPQTAFEFQRVLRNFQRRSEIQGVAQVGGSIIYRLAK >gi|308165223|gb|AEHO01000025.1| GENE 48 48993 - 51134 1585 713 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 53 713 125 806 815 615 47 1e-175 MLCQNCHQRPASIHLYLNNNGENREIALCEDCYQLLKNENGTANMNNFFSSFNDLLGSLG GSTQDFDQPRDNSPKKNKANNGSDSLLNQYGIDLTALAKQGKIDPVVGRDKEIARVIEIL NRRTKNNPVLIGEAGVGKTAVVEGLAQQIIDGSVPAKLQNKKIISLNMVSLVQGTSLRGQ FEQRMQQLIKELESDPNIILFIDEIHELVNAGNAEGGMDAGNIIKPALARGDFQLVGATT IKEYRQIEKDSALARRFQPVEVKEPSIEETIKILQGIKKKYEDYHHVTYTDQAIVSAVTL SSRYIQDRFLPDKAIDLLDEAGSRMNLTIPYVDDAKLKERVEAAQELKQTALKNEDYEKA AYYRDQIEKYEKLKDQKVDPDKTPVISEKVMEKIIEEKTNIPVGDLQKQEQMQLKNLADD LKKHIIGQDKAVDVISKAIRRNRVGFNKSGRPIGSFLFVGPTGVGKTELAKQLAKQMFGT EKSMIRFDMSEYMEQYSVSKLIGSAPGYVGYEEAGQLTEKVRHNPYSLILFDEIEKAHPD VLHLFLQILDDGHLTDSQGRTVSFKDTIIIMTSNAGQGIKSASVGFSAENNHNEQFKKVL GQYFKPEFLNRLDDIVEFEPLSKESLIQIVDLMLDKTNEMIKDQDLHINVTPEAKNLLVE KGYDPDMGARPLRRVIQAMIEDKVADYKLDHPTAKNLTAKRHENDIIIVEDNQ >gi|308165223|gb|AEHO01000025.1| GENE 49 51189 - 51467 333 92 aa, chain + ## HITS:1 COG:no KEGG:LJ0814 NR:ns ## KEGG: LJ0814 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 92 32 123 123 126 72.0 3e-28 MHLIDVTNTYRDLIERQLSSTSSQYIKVYSLGNITVVYTETSTKIEIVLENHRRGIHEDE IQFVIKRLIHEDKIYNISMDQSRKIISITCDK >gi|308165223|gb|AEHO01000025.1| GENE 50 51650 - 52531 1042 293 aa, chain - ## HITS:1 COG:MTH692 KEGG:ns NR:ns ## COG: MTH692 COG0330 # Protein_GI_number: 15678719 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Methanothermobacter thermautotrophicus # 34 287 27 293 318 135 32.0 7e-32 MEFKMILDLKIIIFIVLLVILTSGCTTIVPQNYEGLIETLGKYTKTVKAGLTFKIPFFQR VKKVSMALQPLEISRYSIITKDNAEISTSLTLNYQVTNSFKYFYNNTDSETSMVQLVRGH LRDIIGRMDLNDALGSTSAINNELSKAIGDLTDIYGISVIRINVDELLPSKQIQAAMDKQ LTADREKTATIAKAEGEAENIRLTTKANNDALIATAKAKAEAIKTEADAEAYRINKLQET LSKASEGYFRNQSIVAFTKLSAGNNNMIVMDKENIDKIGDIPAIKKIWDQDKN >gi|308165223|gb|AEHO01000025.1| GENE 51 52681 - 53211 460 176 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1837 NR:ns ## KEGG: MPTP_1837 # Name: not_defined # Def: putative ABC transporter membrane-spanning subunit # Organism: M.plutonius # Pathway: not_defined # 1 176 95 270 270 127 46.0 2e-28 MLLPIIISTVLSSSSFIGEKEHKTLEGLLYTPINTKVLVLGKALGCAAPAVTISTVSVLV YILVVNTVGWRYFKHIILPNMTWLLVTILISPLLVLLSILLVIGSSQYLKNSKSAQGVSM IIVAPIFGMLISQATGVLILGVFETVILIIVLILLDIIVFCVVMKMFNFEKFILNN >gi|308165223|gb|AEHO01000025.1| GENE 52 53091 - 53489 79 132 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1837 NR:ns ## KEGG: MPTP_1837 # Name: not_defined # Def: putative ABC transporter membrane-spanning subunit # Organism: M.plutonius # Pathway: not_defined # 5 89 6 90 270 62 37.0 5e-09 MDRHQLKVMINKEYRELVNDRGLMFSLLIIPIIFSIVLPILLFILGTRKEVSASIVGLNT FIEQFKMIKYPDYLTRGTLPFYVIFTYFFYLYLCYYQLLFLQYYLAVVLLVKKSIKLWKV CYILPSILKSLF >gi|308165223|gb|AEHO01000025.1| GENE 53 53482 - 54393 316 303 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 3 302 12 313 318 126 28 3e-28 MIIEISGINKVIGSKKVINNVSLRIDKGQVFALLGPNGAGKTTLIRIILGLLKPDAGTIR LFGEKLTDKSRPDLLLRVGVQNDGNLYENLTAKENLILWGEIYGLNSKNIKKSIDDLKKM FHLENYIDMPVGSLSKGNRQKVMLARAMFHSPEVLILDEPTTGLDPAAIDEFYQFIKKLK KAGVTIIMSTHYLYGMDGVVDSIGIISSGNLLISDKVDRLRCKIHKVHFKGKFNPKDIQE LISYGELSDCMQNEFIISVDDNNKVADIVKTLVLKGNDIYEVSQVIETVKEIYFRIIGGH SNG >gi|308165223|gb|AEHO01000025.1| GENE 54 54671 - 55678 987 335 aa, chain - ## HITS:1 COG:no KEGG:LJ1313 NR:ns ## KEGG: LJ1313 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 196 333 39 193 509 82 35.0 2e-14 MKAVVEFKQGNKKLLVDMIADAIANVNVDQLVSYKLDEATIQAIKQYQQGNKKDLRDIIA EAIKNYANEGGTAPYKLDNDVVNQIKADLEAESDVESNTPQESVETVTEPEISQEILKDS NDQENTIVGVVNIQKDSTIFDSNGSATDKVLPAGSRWKIDRITEIGGMKFYRVGTNQYIL IDTAKSDGIIFTKTEKPVIGVLYINQNVDLFDKDGHNTNILLNKGTYWKIWGAKVINGKL FYRVGTQKQWVAAESVKVVDNKAIKETPVTGVVKVHVNGHPDYQVAMLDDNGNYTGQFLI QGNSYKLVAKKIINGRLCYRLGTQKQWVPAEYLLF Prediction of potential genes in microbial genomes Time: Wed Jul 13 03:00:51 2011 Seq name: gi|308165221|gb|AEHO01000026.1| Lactobacillus iners LactinV 09V1-c contig00007, whole genome shotgun sequence Length of sequence - 590 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 544 528 ## EUBREC_2744 hypothetical protein Predicted protein(s) >gi|308165221|gb|AEHO01000026.1| GENE 1 1 - 544 528 181 aa, chain - ## HITS:1 COG:no KEGG:EUBREC_2744 NR:ns ## KEGG: EUBREC_2744 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 1 181 15 195 201 164 52.0 2e-39 MKYDYVFKLNAVELYRSGQWIETPEGISQKNFRKRIVQWSRIADIYGLDSLRHSTTCKER SAECRYQLVARVLAGESQKSVAISAGIDSGLLSKWVQTYKIKGYEGLNLKKGRKSKKEAN VSKKSKPTDLTPSEREELIRLRAETEYLKTENEAIKKLIALRHEKWAAELKAKKQQSSKN S Prediction of potential genes in microbial genomes Time: Wed Jul 13 03:01:28 2011 Seq name: gi|308165114|gb|AEHO01000027.1| Lactobacillus iners LactinV 09V1-c contig00004, whole genome shotgun sequence Length of sequence - 89913 bp Number of predicted genes - 107, with homology - 104 Number of transcription units - 38, operones - 22 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 31 - 66 5.1 1 1 Op 1 . - CDS 145 - 2070 2130 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 2 1 Op 2 5/0.167 - CDS 2129 - 4405 1669 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 3 1 Op 3 . - CDS 4410 - 4730 341 ## COG0442 Prolyl-tRNA synthetase 4 1 Op 4 7/0.000 - CDS 4693 - 6111 1491 ## COG0442 Prolyl-tRNA synthetase 5 1 Op 5 12/0.000 - CDS 6128 - 7384 1459 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 6 1 Op 6 32/0.000 - CDS 7394 - 8191 625 ## COG0575 CDP-diglyceride synthetase 7 1 Op 7 19/0.000 - CDS 8209 - 8928 794 ## COG0020 Undecaprenyl pyrophosphate synthase 8 1 Op 8 33/0.000 - CDS 8944 - 9501 717 ## COG0233 Ribosome recycling factor 9 1 Op 9 24/0.000 - CDS 9501 - 10226 931 ## COG0528 Uridylate kinase - Prom 10316 - 10375 6.8 - Term 10329 - 10370 3.5 10 2 Op 1 38/0.000 - CDS 10382 - 11257 597 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 11 2 Op 2 . - CDS 11290 - 12063 1160 ## PROTEIN SUPPORTED gi|238852608|ref|ZP_04643018.1| ribosomal protein S2 - Prom 12170 - 12229 8.6 12 3 Tu 1 . - CDS 12233 - 13237 940 ## COG4123 Predicted O-methyltransferase - Prom 13487 - 13546 6.9 + Prom 13194 - 13253 7.8 13 4 Tu 1 . + CDS 13297 - 13911 579 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 13923 - 13977 12.2 - Term 13920 - 13955 2.0 14 5 Op 1 35/0.000 - CDS 13961 - 15757 225 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 15 5 Op 2 . - CDS 15747 - 17513 189 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 16 5 Op 3 . - CDS 17588 - 17803 317 ## COG3763 Uncharacterized protein conserved in bacteria 17 5 Op 4 . - CDS 17868 - 18113 165 ## LGAS_0794 hypothetical protein - Prom 18266 - 18325 8.0 + Prom 18158 - 18217 10.7 18 6 Tu 1 . + CDS 18237 - 18821 404 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 18827 - 18870 -0.9 - Term 18806 - 18864 10.5 19 7 Op 1 . - CDS 18866 - 19261 409 ## LBUL_0280 hypothetical protein - Prom 19340 - 19399 4.0 20 7 Op 2 . - CDS 19455 - 19646 277 ## gi|259501567|ref|ZP_05744469.1| conserved hypothetical protein - Prom 19673 - 19732 13.8 - Term 19699 - 19769 13.3 21 8 Op 1 33/0.000 - CDS 19784 - 20161 585 ## PROTEIN SUPPORTED gi|227521152|ref|ZP_03951201.1| 50S ribosomal protein L19 - Prom 20191 - 20250 6.0 22 8 Op 2 30/0.000 - CDS 20253 - 20969 755 ## COG0336 tRNA-(guanine-N1)-methyltransferase 23 8 Op 3 12/0.000 - CDS 20959 - 21480 683 ## COG0806 RimM protein, required for 16S rRNA processing - Term 21489 - 21530 5.0 24 8 Op 4 23/0.000 - CDS 21536 - 21808 406 ## PROTEIN SUPPORTED gi|42519387|ref|NP_965317.1| 30S ribosomal protein S16 - Prom 21834 - 21893 7.6 25 8 Op 5 8/0.000 - CDS 21898 - 23325 1550 ## COG0541 Signal recognition particle GTPase 26 8 Op 6 . - CDS 23327 - 23668 150 ## COG2739 Uncharacterized protein conserved in bacteria - Prom 23695 - 23754 5.7 27 9 Op 1 . - CDS 23773 - 25452 1807 ## COG0497 ATPase involved in DNA repair 28 9 Op 2 3/0.167 - CDS 25465 - 26301 572 ## COG1189 Predicted rRNA methylase 29 9 Op 3 . - CDS 26276 - 27142 714 ## COG0142 Geranylgeranyl pyrophosphate synthase 30 9 Op 4 . - CDS 27145 - 27387 417 ## LGAS_0753 exodeoxyribonuclease VII small subunit 31 9 Op 5 7/0.000 - CDS 27400 - 28737 1318 ## COG1570 Exonuclease VII, large subunit 32 9 Op 6 4/0.167 - CDS 28727 - 29626 727 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 33 9 Op 7 10/0.000 - CDS 29633 - 30034 449 ## COG0781 Transcription termination factor 34 9 Op 8 4/0.167 - CDS 30034 - 30447 525 ## COG1302 Uncharacterized protein conserved in bacteria 35 9 Op 9 10/0.000 - CDS 30480 - 31040 659 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 31063 - 31122 6.2 36 9 Op 10 . - CDS 31124 - 32233 1260 ## COG0006 Xaa-Pro aminopeptidase - Term 32252 - 32289 2.3 37 10 Op 1 32/0.000 - CDS 32301 - 32600 438 ## PROTEIN SUPPORTED gi|116629403|ref|YP_814575.1| 50S ribosomal protein L27 38 10 Op 2 . - CDS 32617 - 32928 458 ## PROTEIN SUPPORTED gi|42519428|ref|NP_965358.1| 50S ribosomal protein L21 - Prom 33045 - 33104 8.5 - Term 33264 - 33306 -0.8 39 11 Tu 1 . - CDS 33339 - 33506 145 ## gi|309805498|ref|ZP_07699543.1| hypothetical protein HMPREF9213_0333 - Prom 33668 - 33727 6.3 40 12 Op 1 . - CDS 33731 - 34246 318 ## GALLO_2153 hypothetical protein 41 12 Op 2 45/0.000 - CDS 34255 - 34998 649 ## COG0842 ABC-type multidrug transport system, permease component 42 12 Op 3 . - CDS 34982 - 35851 336 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 43 12 Op 4 . - CDS 35853 - 36692 601 ## SGGBAA2069_c21520 hypothetical protein - Prom 36813 - 36872 5.2 44 13 Tu 1 . - CDS 36876 - 37016 94 ## gi|309806552|ref|ZP_07700553.1| hypothetical protein HMPREF9212_1413 - Prom 37050 - 37109 4.1 45 14 Tu 1 . - CDS 37166 - 37342 110 ## - Prom 37381 - 37440 5.3 - Term 37422 - 37462 6.1 46 15 Tu 1 . - CDS 37463 - 37657 131 ## SGO_0365 hypothetical protein - Prom 37906 - 37965 6.8 - Term 37889 - 37932 -0.4 47 16 Op 1 . - CDS 37967 - 39103 1165 ## COG0294 Dihydropteroate synthase and related enzymes 48 16 Op 2 . - CDS 39103 - 39702 601 ## COG0127 Xanthosine triphosphate pyrophosphatase 49 16 Op 3 2/0.167 - CDS 39695 - 40792 1012 ## COG0285 Folylpolyglutamate synthase - Prom 40889 - 40948 4.6 50 17 Op 1 2/0.167 - CDS 40964 - 41524 675 ## COG0302 GTP cyclohydrolase I 51 17 Op 2 17/0.000 - CDS 41505 - 42023 259 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 52 17 Op 3 . - CDS 42017 - 42352 206 ## COG1539 Dihydroneopterin aldolase - Prom 42409 - 42468 6.8 - Term 42433 - 42477 5.8 53 18 Op 1 . - CDS 42494 - 43639 982 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 54 18 Op 2 . - CDS 43661 - 43831 170 ## LJ0983 nucleoside phosphorylase - Prom 43856 - 43915 2.5 55 19 Op 1 . - CDS 43933 - 44325 409 ## COG0775 Nucleoside phosphorylase 56 19 Op 2 . - CDS 44361 - 44612 229 ## gi|259501540|ref|ZP_05744442.1| conserved hypothetical protein 57 19 Op 3 . - CDS 44605 - 45168 711 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 58 19 Op 4 . - CDS 45174 - 45392 331 ## LJ0980b cold shock protein 59 19 Op 5 . - CDS 45392 - 48178 3431 ## COG0060 Isoleucyl-tRNA synthetase - Prom 48241 - 48300 3.5 - Term 48190 - 48223 2.1 60 20 Tu 1 . - CDS 48392 - 49219 943 ## LGAS_1197 cell division initiation protein - Prom 49239 - 49298 6.7 61 21 Op 1 . - CDS 49325 - 50749 1389 ## COG4690 Dipeptidase 62 21 Op 2 . - CDS 50776 - 51681 816 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 63 21 Op 3 . - CDS 51675 - 51812 56 ## 64 21 Op 4 1/0.500 - CDS 51796 - 52731 992 ## COG1196 Chromosome segregation ATPases 65 21 Op 5 1/0.500 - CDS 52746 - 54029 1074 ## COG1196 Chromosome segregation ATPases - Prom 54055 - 54114 4.6 66 22 Op 1 6/0.000 - CDS 54459 - 55349 517 ## COG1196 Chromosome segregation ATPases 67 22 Op 2 . - CDS 55372 - 56049 801 ## COG0571 dsRNA-specific ribonuclease - Prom 56069 - 56128 10.7 - Term 56112 - 56157 8.4 68 23 Tu 1 . - CDS 56184 - 57935 1913 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 57972 - 58031 9.6 - Term 58347 - 58381 -0.5 69 24 Op 1 1/0.500 - CDS 58388 - 58681 378 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 70 24 Op 2 49/0.000 - CDS 58645 - 59316 471 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 71 24 Op 3 6/0.000 - CDS 59331 - 60293 1016 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 72 24 Op 4 44/0.000 - CDS 60295 - 61263 753 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 73 24 Op 5 . - CDS 61273 - 62277 586 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 62340 - 62399 11.1 74 25 Op 1 3/0.167 - CDS 62425 - 62667 297 ## COG0236 Acyl carrier protein 75 25 Op 2 . - CDS 62718 - 63719 1079 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 76 25 Op 3 . - CDS 63740 - 64726 793 ## COG1200 RecG-like helicase 77 25 Op 4 4/0.167 - CDS 64701 - 65762 888 ## COG1200 RecG-like helicase 78 25 Op 5 9/0.000 - CDS 65764 - 67389 1848 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 79 25 Op 6 . - CDS 67452 - 67811 503 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 67857 - 67916 7.0 + Prom 67747 - 67806 10.0 80 26 Tu 1 . + CDS 67987 - 68172 282 ## PROTEIN SUPPORTED gi|42519405|ref|NP_965335.1| 50S ribosomal protein L28 + Term 68191 - 68245 7.0 - Term 68291 - 68343 12.5 81 27 Op 1 17/0.000 - CDS 68348 - 69007 635 ## COG0765 ABC-type amino acid transport system, permease component 82 27 Op 2 31/0.000 - CDS 69017 - 69655 497 ## COG0765 ABC-type amino acid transport system, permease component 83 27 Op 3 16/0.000 - CDS 69652 - 70473 934 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 84 27 Op 4 . - CDS 70482 - 71222 290 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 71252 - 71311 6.9 85 28 Tu 1 . - CDS 71394 - 72482 1072 ## COG1363 Cellulase M and related proteins - Prom 72660 - 72719 6.4 + Prom 72528 - 72587 11.2 86 29 Tu 1 . + CDS 72649 - 73848 936 ## COG0477 Permeases of the major facilitator superfamily + Term 73984 - 74022 7.0 + Prom 73953 - 74012 6.3 87 30 Tu 1 . + CDS 74046 - 75356 1062 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 75372 - 75409 6.6 - Term 75360 - 75397 6.6 88 31 Op 1 45/0.000 - CDS 75410 - 76210 774 ## COG0842 ABC-type multidrug transport system, permease component 89 31 Op 2 3/0.167 - CDS 76197 - 77126 296 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 77279 - 77338 12.0 - Term 77315 - 77356 6.1 90 32 Op 1 21/0.000 - CDS 77368 - 78504 1160 ## COG0477 Permeases of the major facilitator superfamily 91 32 Op 2 . - CDS 78567 - 78815 243 ## COG0477 Permeases of the major facilitator superfamily - Prom 78853 - 78912 7.0 - Term 78865 - 78907 4.0 92 33 Op 1 13/0.000 - CDS 78925 - 79686 173 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 93 33 Op 2 9/0.000 - CDS 79679 - 80578 968 ## COG4120 ABC-type uncharacterized transport system, permease component 94 33 Op 3 . - CDS 80578 - 80934 447 ## COG2984 ABC-type uncharacterized transport system, periplasmic component 95 33 Op 4 . - CDS 80924 - 81574 714 ## COG2984 ABC-type uncharacterized transport system, periplasmic component + Prom 81875 - 81934 6.1 96 34 Tu 1 . + CDS 81968 - 83185 1322 ## SAG1837 prophage LambdaSa2, lysin, putative - Term 83108 - 83151 -0.6 97 35 Op 1 7/0.000 - CDS 83224 - 84450 1058 ## COG0366 Glycosidases 98 35 Op 2 . - CDS 84341 - 84844 519 ## COG0366 Glycosidases 99 35 Op 3 15/0.000 - CDS 84904 - 85935 207 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 100 35 Op 4 34/0.000 - CDS 85962 - 86282 108 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 101 35 Op 5 . - CDS 86276 - 86965 449 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 102 35 Op 6 . - CDS 86965 - 87573 613 ## FMG_1400 hypothetical protein - Prom 87600 - 87659 11.2 103 36 Tu 1 . - CDS 87699 - 87854 112 ## gi|309805534|ref|ZP_07699579.1| conserved hypothetical protein - Prom 87956 - 88015 2.8 104 37 Op 1 . - CDS 88028 - 88183 145 ## 105 37 Op 2 . - CDS 88170 - 88478 166 ## gi|309805567|ref|ZP_07699612.1| hypothetical protein HMPREF9213_0399 106 37 Op 3 . - CDS 88475 - 88660 207 ## gi|259501600|ref|ZP_05744502.1| conserved hypothetical protein - Prom 88706 - 88765 3.9 107 38 Tu 1 . - CDS 88802 - 88999 190 ## gi|315653345|ref|ZP_07906267.1| minor capsid protein - Prom 89136 - 89195 5.1 Predicted protein(s) >gi|308165114|gb|AEHO01000027.1| GENE 1 145 - 2070 2130 641 aa, chain - ## HITS:1 COG:BS_polC KEGG:ns NR:ns ## COG: BS_polC COG2176 # Protein_GI_number: 16078721 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus subtilis # 2 641 800 1437 1437 866 63.0 0 MIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSII SNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYS QFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPV AHSYIRVMFGPDNSYRAGTIGTVADKIAYGYVKHYEDENELKLRNAELDRLSQGASGVKR TTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHDNILKFDILGHDDP TMIRMLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEFGTKFVRG MLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDV PPEVAFSTMESVRHGKGISDENMAILSKNKNIPDWYIQSCLKIKYMFPKAHATAYILMAL RIAWFKVYYPVIYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLT VLEIANECLERGININMVDIEKSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDE QPFLSKEDLSIRGKVSQTIMEYFENNGVLDGLPDQNQLSLF >gi|308165114|gb|AEHO01000027.1| GENE 2 2129 - 4405 1669 758 aa, chain - ## HITS:1 COG:BS_polC KEGG:ns NR:ns ## COG: BS_polC COG2176 # Protein_GI_number: 16078721 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus subtilis # 8 737 11 755 1437 548 40.0 1e-155 MEDKNKLFLRLLEQIQIIDNIAQNSDLKKGEIENVDVYAKERKWVIHVFLPKVLEFDTYI MLYKALHQTFDPFVNVDLVVRCQLDDNSELNNYWEFAIEHAEKLSASVKEFLIHTKPCYL DANWQITCQNNFVQSMFTSEVLDAIASEFNKYGFKDLSFNINLEDNTKEDIKQLEQQQLE HENAMQKMYEQNPEQSPEYNPEHNMEITKIKDLEDGNKDIFVEGHVFNVESRELKSGKVI LTGEITDYTDSISFKKFLSSKDKLADLEDIKPGVWVQIQGNVLDDTFQHEIVLNIKSIKL IKHSGRQETYEGKQKRVELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAF PEAYVAGKKNGLKIIYGYEANMINDQALLVLNPANMDYRGQEYVIFDVETTGLSSVYDTI IEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSITDEMVQNADDENIVIRQFQEFYQ DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV VLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLA INKVGLKNMYKLVSLASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYD ATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAH YIDKKDAIYRKILLSAQKANRGKIMNCQIYIFILRKKC >gi|308165114|gb|AEHO01000027.1| GENE 3 4410 - 4730 341 106 aa, chain - ## HITS:1 COG:BS_proS KEGG:ns NR:ns ## COG: BS_proS COG0442 # Protein_GI_number: 16078720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Bacillus subtilis # 2 104 461 564 564 111 53.0 3e-25 MAFFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFSDKYDVLYDDRNERPGVKFNDAD LIGAPIRIIVGRRVSEQIVEVKKSTEQESVEMSLDSLTEYISKELR >gi|308165114|gb|AEHO01000027.1| GENE 4 4693 - 6111 1491 472 aa, chain - ## HITS:1 COG:BS_proS KEGG:ns NR:ns ## COG: BS_proS COG0442 # Protein_GI_number: 16078720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Bacillus subtilis # 1 467 1 466 564 504 52.0 1e-142 MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID TFSPEKEELKPLEKVATPDCATIEQLSEFLHVPNTRIVKSILYIVDDKKVLVLIRGDKQV NEVKLQNALDADSEPRVATNEELLSIVKATKGGVGPVKAAYADYIIADETVKGLYNVVVG ANESDYQYINANIDRDFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYT NSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNGIFLAKRSCSF >gi|308165114|gb|AEHO01000027.1| GENE 5 6128 - 7384 1459 418 aa, chain - ## HITS:1 COG:lin1355 KEGG:ns NR:ns ## COG: lin1355 COG0750 # Protein_GI_number: 16800423 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Listeria innocua # 1 416 1 419 420 287 38.0 3e-77 MKSILIFLVIFGILVFVHEFGHFFVGKKCGILVREFSIGMGPKLFQVMKKKTTYTIRWLP IGGYVRFAGPDDIAKIDPGATVVLQFNDNGEVVRIDNSGSQMPISGIPVQVIESDLVNRL IIRGYKNGDENENITYSVNHDATIIEKNGSELIIAPEDTQFQNAKVLKKIASNVAGPLMN IILGFIVFIGLSISGPGAPTTIINKTIDNSPAQRIGLKNGDQVKEIEHQKVSQLEDISKI IAEYKGKKVEVVVLRNNSYRKFKIKPMKVVDNGQTLYQLGFICKLDNNLFSKLAHGCKTS LRTMGLIFNALSSLIRHFSLDKLSGPVGIYSQTRKMSNLGFAYVVTFLAMISINLGIVNL LPIPGLDGGKLLLNVVELVTGKPLSPEKEELVNIIGFVFLLILIIAVTGNDIYRFFIK >gi|308165114|gb|AEHO01000027.1| GENE 6 7394 - 8191 625 265 aa, chain - ## HITS:1 COG:lin1353 KEGG:ns NR:ns ## COG: lin1353 COG0575 # Protein_GI_number: 16800421 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Listeria innocua # 1 265 1 262 262 216 50.0 3e-56 MKQRIITALVALIFFIPVLLLGGYWIDVMACLLACCAISEIFIMKKQILISINFLISLLA TLTLTLPDKFFNFLPVFLGKIQLFCILNMLLLTITVLSKNKTSFDDVGTYVLGSIYVGAG FHYLAAIRNINDGYGLAILGFALIVVWASDIGAYVFGRKYGKRKLWPVISPNKTWEGSIG GIICAIVCTTIYVLIVPTGRNQLLLIGLSIVLSVVGQIGDLVESAIKRFYGVKDSGKILP GHGGILDRFDSLLFVLPVVAYIGIM >gi|308165114|gb|AEHO01000027.1| GENE 7 8209 - 8928 794 239 aa, chain - ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 10 237 26 250 252 271 56.0 6e-73 MKQENKRLDHLAIIMDGNGRWAQERHLPRIIGHRSGMNKVKEIALAANELGVKVLTLYAF STENWGRPRDEVNYLMKLPINFFDKFMPELQKNNIKVNIMGFNDKLPLATAEIIKKAEQE TADNDGMILNFAFNYGSRQEITAAISKIALDIQNKKIEVDSINEQLVSDYLMTAKFGDYA DPDLLIRTSGEERLSNFMLWQLAYSEFYFTKTYWPDFTTDEFKKIVEEYQHRDRRFGKI >gi|308165114|gb|AEHO01000027.1| GENE 8 8944 - 9501 717 185 aa, chain - ## HITS:1 COG:SP0945 KEGG:ns NR:ns ## COG: SP0945 COG0233 # Protein_GI_number: 15900824 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Streptococcus pneumoniae TIGR4 # 1 182 1 182 185 196 60.0 2e-50 MSNVIIEKAKANMSKSISVFEKELGGIRAGVANASLLDGIKVEYYGVPTPLTQMSSITIP EARVLMITPFDKTTLNNIEHAILASDLGITPANDGSVVRIVIPQLTGERRIEIAKKVGKL AEQAKIAIRNIRREGMDALKKQQKDGEITEDDLHKFEKDMQKITDNATKDVDALADKKSK EITKA >gi|308165114|gb|AEHO01000027.1| GENE 9 9501 - 10226 931 241 aa, chain - ## HITS:1 COG:L70624 KEGG:ns NR:ns ## COG: L70624 COG0528 # Protein_GI_number: 15673992 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Lactococcus lactis # 1 238 1 238 238 334 68.0 1e-91 MSQLKYKRVILKVSGEALAGSEGRGINPEVIAHLAMEVKKIHDMGVQIGIVCGGGNMWRG ETGANLGMERAQADYMGMLATIMNGLALQDALENLGVPTRVQTSIEMRQIAEPYIRRKAI RHLEKGRVVIFGGGTGNPYFSTDTTAALRAAEINADVILMAKNGVDGVYSADPKIYPEAV KFDELTQLDIIAKDLKVMDRTASSLSMDNNIPLIVFNVNEAGNIKKVIEGENIGTVIKGG K >gi|308165114|gb|AEHO01000027.1| GENE 10 10382 - 11257 597 291 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 286 1 275 283 234 46 1e-60 MAKITAAQVKELRERTGAGMMDVKKALVKADGDMDKATDILRESGAAKAAKKSGRIAAEG LAAFDVEGNNAVLVEINSETDFVSSNDKFVKFVDDVTKAILAAKPADLEAAMNVPLGEGT IASAETELTAVIGEKITLRRFTILTKKDNEVFGAYKHNNGAIIAVTILDGDNAEAAKNIA MHVAAINPEYLDKSQVPAEVLEHQTDVFTKETEKEGKPSKIIPKIVEGRMNKYLAEICLV DQPYVKDSDMTVAEYVKSVKSEVKNFVRYEVGEGIEKKQEDFAAEVREQMR >gi|308165114|gb|AEHO01000027.1| GENE 11 11290 - 12063 1160 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238852608|ref|ZP_04643018.1| ribosomal protein S2 [Lactobacillus gasseri 202-4] # 1 256 1 258 261 451 85 1e-126 MTVVTMKQLLEAGVHFGHQTRRWDPKMAPYIFTQRNGIYIIDLQKTIKMLDDAYNFMKDV ATDGGVFLFVGTKKQAQDAVKEEAIRAGQYFINERWLGGTLTNWSTIQSRVQRLKQLKKM SEDGTFELLPKKEVAVLTKELDKLQRFLGGIEDMPRIPDVMFVVDPKKEKIAVHEANILG IPVVAMVDTNTDPEPVDVVIPSNDDAIRAIRLIAGAMADAVIEGKQGQDDEKSVEAEFTE KSEADDEKSIEEIADED >gi|308165114|gb|AEHO01000027.1| GENE 12 12233 - 13237 940 334 aa, chain - ## HITS:1 COG:SP1536 KEGG:ns NR:ns ## COG: SP1536 COG4123 # Protein_GI_number: 15901380 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 246 5 247 249 187 38.0 3e-47 MEILKSNERIDYMYSDHLKVIQRKDAFSFSLDTLLLAYFAKEKIHDRDKVVDLCCGNGAA TLYMSYFNLAHYDAVEIQPEIASQAERSVNLNQLENRIAVHCINALDAPKKLGKDKFDVV TVNPPYFKVPEGHVINPNQQKAIARHEILINLEQVIKVASQLLKMKGKLFIVHRPERLAE IIHYCLNNHMGVKNIQPFAPQKDHETNLVVVEAVNNAPTDGLVLNNPIIVHNSDSSFTDE IENIIHENKAASTKTENKKYYFYCLKCADGSFYGGFTDNLKKRIEAHNSGKGAKYTKSRR PVKLLYFEEFDDKKAALKREYWFKHHDRKWKENF >gi|308165114|gb|AEHO01000027.1| GENE 13 13297 - 13911 579 204 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 194 1 196 249 194 46.0 1e-49 MFYKFLRSTVRIIFWIINGHLHIHNSNYIPEENYILAAPHRTWWEPFLFAIAAKNTEFVV IAKKELFKNPIYKFLLKKCNAFPVDRANPGPSAIKIPVKELKAGQRSFMIFPSGTRHSDQ LKSGVFIIAKLANKPIVPVIYQGPLTFKGILKRQNVEIRFGKPIYLDGKIKINNENTPIL YAKLENAWQELDNEQNPNFKYIPK >gi|308165114|gb|AEHO01000027.1| GENE 14 13961 - 15757 225 598 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 360 583 132 355 398 91 29 2e-17 MTNNKQESIWAHSIPVKEQLKIFVRLLHFVKPYKLEMILALVGAFLVSVINMLLPFVLQY FIDKYLIKSHPALKLILFFALLFAMGTIMKAIIQFIYEYFYAVGSEKTLENVRRCLYKKM HSLGMRYFDQTPAGSIVSRITNDTMTLSRFLSVWASAVIGIFSLVTSFVAMYCTNKPASL IVLAFLPILLFIIWFYSRNSSRLYRKFREYLSDINTNLNEAIEGVSLIQQFKQEKRMMSL FEKKNIALMKTRQRMILLNALLLSPLTSLLYSLALIASLLYFGYPLRETFIPAGVVYAFS QYIATFFNPIAMVMDTMTLFQDGIVAGKRIFALLDNPELEPKQSANAKDDNIIFNGKVEF KHVSFSYDGKNEILHDISFSIDPGKTLGIVGHTGSGKSSIINVMLRFYEFYQGQILIDGV DIKNYSKSELCKKIGLVLQEPFMFYGDIASNIRLYNKDITDEELVNAAKNVQADGFIQKM ADGYKTRVLEGGEGLSQGQKQLISFARTLVTNPKILVLDEATANVDTETETLIQQGLDKL RQGRTTLAIAHRLSTIANADKIIVLDKGRIIESGTHESLLAKKGYYYDLYTLQTNSEN >gi|308165114|gb|AEHO01000027.1| GENE 15 15747 - 17513 189 588 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 353 562 34 249 329 77 30 2e-13 MGIYQKLGWFFKKHKKRYIFGIIMLMLTSLANLVPPRILGLMADQLNKKQITWFSYFKYT GLILVAALSLYVLRLLWRSLIWGGATILEKELRAKLFAHFMKMDRTFFQNNRTGDLMAHA TNDVMAVQEVAGDGILTVVDAITLGGCTAVAMILFVDLRLTLIALLPMPLLAIFARYFGD KLYVAYDKSQAAFSKLNNKTQESVSGIKVLKTFGQAKQDTNSFNKMVDETICINKQVFKW QSMFDPLGSLLIGLTYVIAIIYGSILVNNQSITVGQLVSFVAYISNMVWPMFAIGYLFNI LERGSASYDRIEKLLVQKPLITDKNADSLLNIQDLHSDLEFNIDSFAYPDDVDHNILKNI HFTLKPGQTLGLVGKVGAGKTTLIKLLLREYDNYAGNIKFGGENIQKIPLKELLEAISYV PQKNFLFSTTIAGNIAFSNPDATMEEIQVAAKKAGLHDDIMAMPEQYETIVGEKGVSLSG GQRQRMSIARALLKDSRVLILDDALSAVDAKTEGIILHNLKAEMHDKTALIASHKLSSVM DADLILVLKHGQIVEQGVHDELLKKKGWYAKMWERQELQSKVGENIDE >gi|308165114|gb|AEHO01000027.1| GENE 16 17588 - 17803 317 71 aa, chain - ## HITS:1 COG:BH2350 KEGG:ns NR:ns ## COG: BH2350 COG3763 # Protein_GI_number: 15614913 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 70 1 70 72 57 45.0 5e-09 MNYIWIILIIVAFLVGLAAGFYGARLYMKKYFKENPPISEDMIAAMMSQMGQKPSAKKLN QVMNMMKHSQR >gi|308165114|gb|AEHO01000027.1| GENE 17 17868 - 18113 165 81 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0794 NR:ns ## KEGG: LGAS_0794 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 5 81 11 87 87 69 66.0 5e-11 MNEADEKLVKRINELYHLSKQRKLTELEIKEQKKLRLQFLANFRAGFKQQIEDIVFVDEK GNEVTSEKAKAVQRKKGLRKD >gi|308165114|gb|AEHO01000027.1| GENE 18 18237 - 18821 404 194 aa, chain + ## HITS:1 COG:BH2356 KEGG:ns NR:ns ## COG: BH2356 COG1974 # Protein_GI_number: 15614919 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Bacillus halodurans # 9 192 7 206 207 100 33.0 2e-21 MELTNDKNKQLAILSFIYNYISKNNFPPTVREICDGIGLSSTATVHGHLLRLEKKGWIVR NAAKPRAIEITQLGNKKLNLDSKAIPLVKNIRSKKPYFAKSDIIDKFPMLPNLQNYDNQL LIWQYPDTSLNELQIMNNDMLIIHLKNQEININDIIVYANSFDKIKLAKLDHHFKSKHIK ILGTVVGIYRNLTN >gi|308165114|gb|AEHO01000027.1| GENE 19 18866 - 19261 409 131 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0280 NR:ns ## KEGG: LBUL_0280 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 9 130 165 284 285 94 42.0 1e-18 MTNEKMDKLIGYRDAKDDAGLRQIKLNDSITAAVDAGAGQQYLHFVKGNWSIIVHASSIM NQSAEKPALKLLNLIEKYGLPKTTGKSTIYITAGKSKGSLNNVFKWQLNDKYYQLDTHSL TTALKMLSSLE >gi|308165114|gb|AEHO01000027.1| GENE 20 19455 - 19646 277 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501567|ref|ZP_05744469.1| ## NR: gi|259501567|ref|ZP_05744469.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_05589 [Lactobacillus iners AB-1] putative lipoprotein [Lactobacillus iners LactinV 03V1-b] putative lipoprotein [Lactobacillus iners LEAF 2062A-h1] putative lipoprotein [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] putative lipoprotein [Lactobacillus iners LactinV 03V1-b] putative lipoprotein [Lactobacillus iners LEAF 2062A-h1] putative lipoprotein [Lactobacillus iners SPIN 1401G] # 1 63 1 63 260 104 100.0 2e-21 MNKKKLFVGTLMLALMLSGCTKQDDRSAINVKAHNNSSTKVNKKVVEANNKKENSRLIFF NKK >gi|308165114|gb|AEHO01000027.1| GENE 21 19784 - 20161 585 125 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227521152|ref|ZP_03951201.1| 50S ribosomal protein L19 [Lactobacillus gasseri JV-V03] # 1 125 1 125 125 229 90 3e-59 MNAVEGEIFMDPLIAELTKEQLRTDIPEFRAGDTVRVHVRIVEGTHERIQMFEGVVIKKK GAGISATYTVRKIASGVGVERTFPVNDPRVAEVEVLRHGRVRRAKLYYLRDRHGKAARIA EKRRG >gi|308165114|gb|AEHO01000027.1| GENE 22 20253 - 20969 755 238 aa, chain - ## HITS:1 COG:SP0779 KEGG:ns NR:ns ## COG: SP0779 COG0336 # Protein_GI_number: 15900673 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 235 1 235 239 263 54.0 2e-70 MKINVLTLFPDMFAPVQQSMLGRGLEDKKWNLNLINFRDFTSDIHHHVDDSPYGGGAGMV LQIMPIKKALDTIENKGKVIITAPQGKTFNQEMAREWAQEDNLTFICGHYEGFDYRIYDF VDEIVSIGDFVLTGGELPTMSMIDATVRLLPGVLGNAASPVDESFSHGLLEYPQYTRPAD FEGKKVPEVLMSGNHQKIAEWRLKESLRMTYKKRPDMLAYRVLTAQEQKLLEEIKRES >gi|308165114|gb|AEHO01000027.1| GENE 23 20959 - 21480 683 173 aa, chain - ## HITS:1 COG:BS_ylqE KEGG:ns NR:ns ## COG: BS_ylqE COG0806 # Protein_GI_number: 16078665 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Bacillus subtilis # 1 172 1 174 174 121 42.0 5e-28 MTEYYFVGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYISVGDQKVKMTVETVRFHKQ AYLVKFLQINDIDEANRIVNKNLYVSDEDQTDLPKGSYYIHQLIGLDVFDYETKTKIGIL TDIEMPGANDIWEITPSKGKIFWIPNISSVVKQVDLVNKKIEVILLEGLRDEN >gi|308165114|gb|AEHO01000027.1| GENE 24 21536 - 21808 406 90 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519387|ref|NP_965317.1| 30S ribosomal protein S16 [Lactobacillus johnsonii NCC 533] # 1 90 1 90 90 160 83 2e-38 MSVKIRMRRMGSKRKPFYRLVVADSRMPRDGRFIEEVGFYNPLSDTDSVKLDEEKVFAWL QKGAQPSDTVRSLLSKAGLMKKYHEAKYNK >gi|308165114|gb|AEHO01000027.1| GENE 25 21898 - 23325 1550 475 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 455 1 464 523 531 61.0 1e-150 MAFENLSEKLQKALRKLTGKGKISENDINQASREIRLALLEADVNFKVVKKFIKTIKAEA LGKEVQESLNPGQQIIKIVNDELTKMMGSDTASIIEAKHIPTIIMMVGLQGTGKTTTVGK LANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLNVPVYSENNTDVVAIVENGLMQAD RNHNDYVIIDTAGRLEIDDQLMDELKNIVDVAHPENIILVADAMTGQVAATVAEGFNSKL KLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMASRILGMGDM LSLIEKAQQDFDAKEAEKVAQKMRENTFDFNDFVDQMDQMQKMGPLDQIIKMIPGMANNP ALKNFKVPDKQIAHTKAIVYSMTPAERENPDLLNPSRRRRIAGGCGLSVVEVNRMIKQFK QAKDMMQKVTSGNFKGLSNLPGMDTPMAKMAMKSMSKNFKKNKQKRLKNIKRFHS >gi|308165114|gb|AEHO01000027.1| GENE 26 23327 - 23668 150 113 aa, chain - ## HITS:1 COG:SP1288 KEGG:ns NR:ns ## COG: SP1288 COG2739 # Protein_GI_number: 15901148 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 3 108 2 105 110 72 42.0 2e-13 MNELQKNELYSNLYGFYGKLLTKRQQDYFEDYYYSDLSLGEIADNHGVSRQAVFDNLKRS CKLLNNFETKLRMKSDYDFFEQSLQKCIDSLNVNDYVATQSVIEVMLSRLKGE >gi|308165114|gb|AEHO01000027.1| GENE 27 23773 - 25452 1807 559 aa, chain - ## HITS:1 COG:BS_recN KEGG:ns NR:ns ## COG: BS_recN COG0497 # Protein_GI_number: 16079480 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Bacillus subtilis # 1 555 1 568 576 379 38.0 1e-105 MLVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSRAQIDMIRSGES KAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTINILK NLSQYLVDIHGQRDMQILMDQDLHINLLDNYANNDFKESLCQYQKIYAKWQEIKQRLSAI RKNAQEIAQKHDILEYQLNELKAANLTDEKEDERIDDEYRQLTNYQKIMTAANYFMQLYE DEQGLSTLLDDGQKTASDLSGYSVQFSNFEKTFNDGVYALEDAHEELTSIIDNLEFDSEH YAYLTERINLLNTLKKKYGPTLKDVFVFYDNIQREINQFDNQYFDEEKLNKDLQSLQAKL MTYADELTQARKNNAKILEKKIKQELSSLYMDKARFVIKIEPCNTFNKFGLDKVAFMIAT NPGDDLHPLVRIVSGGEQSRLLLALKAIFSESEPVGTMIFDEIDTGVSGRVAAAIGKKMH KIGLSKQVIAITHSPQVAAASDHHFAISKIVKDGETFTKALSLNKDETVITIAKMMAGKD ITEISKQNALELITKLHNE >gi|308165114|gb|AEHO01000027.1| GENE 28 25465 - 26301 572 278 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 11 274 5 268 274 291 56.0 7e-79 MICIERHYNGKKRADVLLFEQGLFYSRTEAQRAIMAGLISDHNHQRIDKSGEKFPINEVF YVKNDNKKYVSRGGYKLEKALNVFNIDLTDKVCLDIGASTGGFTDVALQNHAKLVYALDV GYNQLSWKLRDNPQVIVMEKQNFRYSTPADFTEGLPDFAMTDVSFISLDLIMKPMFEILK NNCDAVCLIKPQFEAGPENVGKNGIVHDHRVHCNVIEHTILEAQKIGFNVINLDYSPIKG GKGNIEFLIHLRKDLNHLGENLWQGDIEKLVLTAVADL >gi|308165114|gb|AEHO01000027.1| GENE 29 26276 - 27142 714 288 aa, chain - ## HITS:1 COG:slr0739 KEGG:ns NR:ns ## COG: slr0739 COG0142 # Protein_GI_number: 16329282 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Synechocystis # 30 270 38 281 302 169 39.0 5e-42 MKLTDFSELYLPQINSFLKEQLECTINDHKFSEIMSYSVLAGGKRLRPLLFLATLEILSH PISEKEIKIACGIELIHTYSLIHDDLPAMDNDDYRRGKLTSHKKWGEAEAILAGDALLPL GIQWIAEASNSYELIKVITRAIGPNGMAGGQYMDIDSTNNLSYKRNETFIDKMEFLKTGC LIVASVQMAAKYANSSDKVQMNLLHFAEAFGRAYQIYDDIVDIMQTSVQAGKKTHKDADN GKNNTLTMLGLKKSQAELSDLIARGKVAIKDIDNQLLSDFFDLYRKAL >gi|308165114|gb|AEHO01000027.1| GENE 30 27145 - 27387 417 80 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0753 NR:ns ## KEGG: LGAS_0753 # Name: not_defined # Def: exodeoxyribonuclease VII small subunit # Organism: L.gasseri # Pathway: Mismatch repair [PATH:lga03430] # 1 80 1 80 81 77 71.0 2e-13 MSDQKNTFEEQLKQLQDIVTKLEGGNVPLEDALNQFQEGVKLSRELEQKLNDAEKIVAKL IDKDGNVKQLNPEDSNSPEE >gi|308165114|gb|AEHO01000027.1| GENE 31 27400 - 28737 1318 445 aa, chain - ## HITS:1 COG:lin1398 KEGG:ns NR:ns ## COG: lin1398 COG1570 # Protein_GI_number: 16800466 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Listeria innocua # 6 418 5 418 450 318 40.0 1e-86 METSPKYLTVTDLNFYLSKKFKNDPYLHKVFLQGEVSNFRLRMNSTQYFSLKDEKSKINA VMYKSFFEKVKFKLVEGMKVYVSGYIDLYSPQGSYQFYVHTIEPAGLGALFEQLRQLREK LDKEGLFADSHKKKIPKFPDKIAVVTSASGAVIHDIMVTANRRFPHVEIDLFPTIVQGKD AAASIIASLQQIAASQDKYDVVIIGRGGGSLEDLWPFNEEMVVRQIYSMTMPVISSVGHE TDTTLSDLVADKRAATPTAAAEYATPELSAITLQIIELRTHLYAAIRSIINSDKILFNRT KNSVFLREPQRFYDEKMQTLDLLEQKLEQVANNYLLNVKTKYQLVNQSLLSTNPHQIIKH HYQELIFKTQNLNKSMCYLINNNKNNFYNLSQKLDDNSPLKAISRGYVYTANEDGKTVTS VHQICENDILNLNFKDGLVKTRVLK >gi|308165114|gb|AEHO01000027.1| GENE 32 28727 - 29626 727 299 aa, chain - ## HITS:1 COG:SPy1502 KEGG:ns NR:ns ## COG: SPy1502 COG0190 # Protein_GI_number: 15675405 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pyogenes M1 GAS # 16 286 1 273 284 259 48.0 5e-69 MRSAVPTSFFKGDLYLTLILDGKEPAKKIIDELTLEVEHLKAQNILPTFCVIEVGEDPAS KIYLRLKRKLAKKIGINEQTIKFPGDIRQDELINKIKELNADPHVDAIMVQLPIPEHINT RLVLEAIDPAKDADGFTPYNQGRMWQGQVNIIPATVRSIMTILDYYQLNVEGKNALIIGR SIIVGKPVASQLLARNATVTIAHSHTRNLQELTLLNDIIISDVGRAHLITKNMVKPGSIL IDVGMNRENGKLMGDIEYDDCLPIAEAITPVPGGVGPLTVANLMKQVIILTKLRHNYGN >gi|308165114|gb|AEHO01000027.1| GENE 33 29633 - 30034 449 133 aa, chain - ## HITS:1 COG:L92686 KEGG:ns NR:ns ## COG: L92686 COG0781 # Protein_GI_number: 15672676 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Lactococcus lactis # 41 131 233 322 323 70 39.0 7e-13 MTQHDVRVIAMQALYLADQVHEHEDVDAIKKKTMDVLDIKEFPDYAYEILQGVMKEKSSI DANLAKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSSAKSK GFINGILANFIDK >gi|308165114|gb|AEHO01000027.1| GENE 34 30034 - 30447 525 137 aa, chain - ## HITS:1 COG:BS_yqhY KEGG:ns NR:ns ## COG: BS_yqhY COG1302 # Protein_GI_number: 16079489 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 119 2 120 135 80 38.0 8e-16 MPESSTILLSNNENGDETRVDLGVLEVILGIAAKKVDGVNEMRGSLKSSIDKIFGRSNQG KGVSLTNRNGNLIADVYAYFDYGVNVPKVALELQKQLGLQLEQMTNLKLVETNIHVVGLI SEDDKNNTKVEYKEVKN >gi|308165114|gb|AEHO01000027.1| GENE 35 30480 - 31040 659 186 aa, chain - ## HITS:1 COG:lin1392 KEGG:ns NR:ns ## COG: lin1392 COG0231 # Protein_GI_number: 16800460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Listeria innocua # 3 184 1 185 185 220 61.0 1e-57 MTMISVNDFKNGLTIQYNNDIWRIVEFQHVKPGKGGAFVRSKLKSLKTGAVQDYTFRSTA KVEDADVQTKTMQYLYNDGTSFVFMDMATYEQLEVPETQAEAEAKFLKENMVVNIIMHDG KTLGIEVPNTVDLVVKETAPATSTGSGKPATMETGLVVTVPMFINVGDVLTINTAGNGSY VSRANK >gi|308165114|gb|AEHO01000027.1| GENE 36 31124 - 32233 1260 369 aa, chain - ## HITS:1 COG:BH2800 KEGG:ns NR:ns ## COG: BH2800 COG0006 # Protein_GI_number: 15615363 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Bacillus halodurans # 14 368 3 353 355 264 43.0 2e-70 MDAKSKLLTLINARIEKVTKLIKEKNADALIIINQANYRYLTNFTGEEAELILCANGDRI LLSDSRFAGQIKKQAPGEMKVIMKHKNSVSEITEQLRHLSLKKVLVEGEAISAIDYQNLV NSNSDIEFEMALELVEVARNVKDELELDALKQAIAISSQSFTEILPMLQPGVTEREIGAK LDYLFKLNGGDGPSFDTIIASGYRSSWAHGVASDKKLQKGELVVIDFGSFYHGYTADITR TVALGQVPAELQKIYKIVYEAQKQGIATAVAGKTGADVDKAARDYICEQGYGQYFGHGIG HGIGLEIHELCMPALPFSKEVLKDNMAITVEPGIYLPDFGGVRIEDDILINGNSPETMSK LPKEELLVL >gi|308165114|gb|AEHO01000027.1| GENE 37 32301 - 32600 438 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116629403|ref|YP_814575.1| 50S ribosomal protein L27 [Lactobacillus gasseri ATCC 33323] # 1 99 5 103 103 173 84 3e-42 MMIDNLVQLKLFAHHKGGGSTTNGRNSAGRRLGTKRADGQQVTAGAIIYRQRGTKIHPGK NVGRGGDDTLFALTDGVVKFERLGKDRKQVSVYSAEEAK >gi|308165114|gb|AEHO01000027.1| GENE 38 32617 - 32928 458 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519428|ref|NP_965358.1| 50S ribosomal protein L21 [Lactobacillus johnsonii NCC 533] # 1 103 1 103 103 181 85 2e-44 MYAIIKTGGKQYKVTEGASIFVEKLDVEEGTVVTFDEVILVNDGESTKIGTPVVKGAKVT AKVEKQGKEKKVVTFKYKPKKHSHSKYGHRQPYTKVIIESIEA >gi|308165114|gb|AEHO01000027.1| GENE 39 33339 - 33506 145 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805498|ref|ZP_07699543.1| ## NR: gi|309805498|ref|ZP_07699543.1| hypothetical protein HMPREF9213_0333 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9219_0373 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0402 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0289 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9216_0321 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0522_0299 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0160 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0775 [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9213_0333 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9216_0321 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9217_0289 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_0402 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0373 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF0522_0299 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0160 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0775 [Lactobacillus iners SPIN 1401G] # 1 55 1 55 55 87 100.0 3e-16 MVEIAYMLVTGLSFTIAIHFVLLGIPITIIGLLYWKYYVDKIEKLLRDKKSSLSN >gi|308165114|gb|AEHO01000027.1| GENE 40 33731 - 34246 318 171 aa, chain - ## HITS:1 COG:no KEGG:GALLO_2153 NR:ns ## KEGG: GALLO_2153 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus # Pathway: not_defined # 1 170 1 170 171 202 60.0 5e-51 MKIKEYFGSISQLEKKLSAWIDLPISLRVRSTGTRNITFLFESFSEEEIISFFKDTIQQP EHAIVGYRQDDIYGDILGKCDYKDVLYFEGIGDKVYAYADNLTLSLKNKLYEIEEFSKLY VRISKSFIVNILVVEKIYPSLNGKFIIELTDGQNLTVSRKYKKQFLEYLED >gi|308165114|gb|AEHO01000027.1| GENE 41 34255 - 34998 649 247 aa, chain - ## HITS:1 COG:BS_yvfS KEGG:ns NR:ns ## COG: BS_yvfS COG0842 # Protein_GI_number: 16080461 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Bacillus subtilis # 14 246 11 244 245 112 27.0 7e-25 MNQVSSLFFLIWLDIKRVFRDTKYVLFIIVLPVIFYIIYTAIFPENANVNGVPWSEYCLI SMIAFGIMGNAINLLGTKIADERKKQWYTYLKVSPVNSTYYVISHVFSYLLISVAFTFLM FVVAYLYKGINLGVLEMINIGITLNIGSIVFLIMALLIGRLDSLSQPIGTITYLVLSFLG GLWMPVAAMPKFLSQIATFLPSYNYARLGWGLLENKGIDVKSVAILFIYIICFLAIYILL QRKEQAN >gi|308165114|gb|AEHO01000027.1| GENE 42 34982 - 35851 336 289 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 7 286 14 311 312 134 31 2e-30 MNNVFEISNITKSFKNKQILKGVDLIVNRGDIIGLLGLNGEGKSTLIKIILGILSQDYGE VKRNFDIKSDVGVMLQEISMPEKMKVYEWLDMVKCFSTNSESVESILDSVNLRTVRNKYC DSLSGGQQRRVQFATAIINNPKVLILDEPTVGMDVVSKKAFWETLNTFSFSKDLTIILIS HDMEEVAEFCNRVLILSKGLLVSDSKMTDIQDRIEKNSSYSIDKSQITQEQLEVVTKFSF EETDSEIKFTYQMIDEVVSVGKIPISIIKKNRSNLRKYFMEVLENEPSE >gi|308165114|gb|AEHO01000027.1| GENE 43 35853 - 36692 601 279 aa, chain - ## HITS:1 COG:no KEGG:SGGBAA2069_c21520 NR:ns ## KEGG: SGGBAA2069_c21520 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus_gallolyticus # Pathway: not_defined # 14 278 57 323 327 173 37.0 7e-42 MSFISKKDIQGVDAVTTEDFIKFKIFNPFIDLQELIKIIDSKLWFSEESYYFALSEIEQE KALISSNISNLLSKIICTNHKRGENVTFENYKEWFLKVLSSMSCMTISNQIKKSNDLPRD FVDFSKLKSSSNSGVLNYNDVDFFYSYIKLALLDIINFSSFYFLQNFSNHINKSLKKLRD SGIYYAFCFCKYHREYVEFFLIISINQTVPNCCDYIIDELGSIYEAYDYYENQNTGVQDF KEDLCAIYLTDTFIESNVPEFTSVQRGFINKIILMLGGG >gi|308165114|gb|AEHO01000027.1| GENE 44 36876 - 37016 94 46 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309806552|ref|ZP_07700553.1| ## NR: gi|309806552|ref|ZP_07700553.1| hypothetical protein HMPREF9212_1413 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9216_0326 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9212_1413 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9216_0326 [Lactobacillus iners LEAF 2053A-b] # 1 36 1 36 46 69 97.0 7e-11 MEQLEISEFQTQGFEVKKLDTDDFLSSDQMNWSVTLCCCPCCCCCG >gi|308165114|gb|AEHO01000027.1| GENE 45 37166 - 37342 110 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTLRAQSLYTHTTQITSKICIHTCMYFWGDLHFGESPNPYVSYRLIFATYWKKAHKTY >gi|308165114|gb|AEHO01000027.1| GENE 46 37463 - 37657 131 64 aa, chain - ## HITS:1 COG:no KEGG:SGO_0365 NR:ns ## KEGG: SGO_0365 # Name: not_defined # Def: hypothetical protein # Organism: S.gordonii # Pathway: not_defined # 1 64 1 64 64 89 90.0 3e-17 MFIFKSNMDKDFDQTCEYILKLKRAELFFHGIKKQDKTKARLYHATLEYYYANHKKERYM RILK >gi|308165114|gb|AEHO01000027.1| GENE 47 37967 - 39103 1165 378 aa, chain - ## HITS:1 COG:L0176 KEGG:ns NR:ns ## COG: L0176 COG0294 # Protein_GI_number: 15673137 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Lactococcus lactis # 66 373 49 356 357 186 34.0 8e-47 MEIKEIKYDKINIEGLPLQIIKRDILQRQEIVLAWQGIECVENKIIDFLNHFDIPLFRCE NTIQFLFPITALKILAAKSKILWPDDEKLALSIYAIIKSHCIIWKAGRFTFDITDKPLVY GILNVTPDSFYDGGQYYAPEDMKKHIANMVDSGADIIEVGGQTTKPGGYVEVKPEDEIMR TIPAIKFIHDKYPNIAIAIDTYKLPVMQAAIEAGVDIINDVRAFDSYQKRALMAKSNVGL VTMHSSREHEYDNLSDEMIKFFKDNLKTLIDAGIDLNRIILDQGIGYAKVADGYQDYTMM RNLDQLNKFNRPIMVAISRKGFGKKLFNLNKEDRLPVTLIAESAMFLRGGRVIRAHDIAE TYQLVNMLDIINQSYWFR >gi|308165114|gb|AEHO01000027.1| GENE 48 39103 - 39702 601 199 aa, chain - ## HITS:1 COG:BS_ysnA KEGG:ns NR:ns ## COG: BS_ysnA COG0127 # Protein_GI_number: 16079888 # Func_class: F Nucleotide transport and metabolism # Function: Xanthosine triphosphate pyrophosphatase # Organism: Bacillus subtilis # 9 194 8 194 198 70 30.0 3e-12 MISNEMNFVIASNNIKKAKELENILYHLGYHSIIYSELMPYIQFPNEQNNSLEQNACTKA EFISNYLNNELVIADDTGLYLDAFPQEYGVSTKRQLMKECKNGNFNQYLLNKVKEKDRKM TLRSVVALAQNGVIIAKGAGKMRGKIALEELGNMSTGFDKIVIPDGSTKTMAQMDWHTRF LYLHRAIALQNLLKKRNFS >gi|308165114|gb|AEHO01000027.1| GENE 49 39695 - 40792 1012 365 aa, chain - ## HITS:1 COG:CAC2398 KEGG:ns NR:ns ## COG: CAC2398 COG0285 # Protein_GI_number: 15895664 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Clostridium acetobutylicum # 2 362 56 426 431 158 31.0 2e-38 MMIKGVLEHAGYKVGYFNSPALIDDREQISINNILISRNDFVATYYEILNKLSPDESAKI SVFEWWTLIMLVYFANKKVDWAVIECGLGGTDDATNIINAPEYAIFTHIALDHIHILGDT VEKIAKAKSGIIKYGTKATIIAPLQQKAVVNIIKEKCSQAQVPLILSDEIAKIKVHNSKI NIISTDFTLESSFSLLGEYQRENLKTVIALVKQLMREKVLISLMPLKQMLETIKIPARCE KIASLPDVLIDGAHNPDAAYNLAQTIISLRHGRRVIMILGFLKDKNYQKMIQIYQEISHD FILTEPDNLQRKLPVAILAQNFKNHVMQAVNVRSALKIARQNAKPDDLIVVTGSFYLVKD LISDD >gi|308165114|gb|AEHO01000027.1| GENE 50 40964 - 41524 675 186 aa, chain - ## HITS:1 COG:L0175_2 KEGG:ns NR:ns ## COG: L0175_2 COG0302 # Protein_GI_number: 15673136 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Lactococcus lactis # 3 182 26 205 209 191 52.0 7e-49 MNQQKIEHAVRELLVAVGEDPDRSGLVETPKRVAKMYQEIFSSLNHRPEDFANYKKFHVD SNPEMVSINHIPIYSMCEHHLLPFFGYADIAYIPNNNMVLGLSKIPRLVEFVSKKPTMQE KITTDIVKQLAKFIDPKGIAVAIKARHLCMEMRGINKYGQYTYTSDYAGLFNEDDRLKQE FLNQRG >gi|308165114|gb|AEHO01000027.1| GENE 51 41505 - 42023 259 172 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 1 149 117 262 278 104 42 4e-33 KMKSKAYLSVGSNIGDRLNNIVQAVNLLRSNKHIYNVTVSSVYETEPVGNVEQQNFYNIG IKIETDLDPFLLLEALHDIEQKLHRKRLVRWGPRTIDLDIIDYENYQIKTDILTLPHKER DNRKFVLEPLLEISKDDPAYHNLLQEKIKCTKDTNWIKVVQQSEVFNESTKN >gi|308165114|gb|AEHO01000027.1| GENE 52 42017 - 42352 206 111 aa, chain - ## HITS:1 COG:DR0169 KEGG:ns NR:ns ## COG: DR0169 COG1539 # Protein_GI_number: 15805206 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Deinococcus radiodurans # 3 110 12 117 118 68 35.0 4e-12 MVYTHNGVFAEEKILGQRLEIDCEISYPIEQKVIHDSLSETISYVDIYELIVKYAQEQSF NLIETLANKLADKILSEYSMIISVQLKVRKYGVPMAGAFDDIEIEVFKKQK >gi|308165114|gb|AEHO01000027.1| GENE 53 42494 - 43639 982 381 aa, chain - ## HITS:1 COG:BS_yrvO KEGG:ns NR:ns ## COG: BS_yrvO COG1104 # Protein_GI_number: 16079805 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Bacillus subtilis # 3 346 2 344 346 347 53.0 3e-95 MKKNIYLDNAATTPVSPSVAARINDEMLDDFGNASSQHYFGRKARAAVEVARKIIADSIN AKANEIVFTSGGTESNNTAIYGTAKLRSHLGKKIITTKVEHPSVLNPMKDLESQGYNIVY LDVDQTGHISLEQLKDELTDDTILVSIMSVNNEVGSIMPIEEIGKLVKDTNALFHVDDVQ GFGNIDIDVQKSNIDLMSTSAHKINGPKFLGFLYEKEGINLPPLLLGGEQELKRRPGTEN VPAISGFGVAVKESNIDKKEQQKKYQNLQNIIINKLKHDHVDFEVNGSISGSVSHHVLNL WLKGIDTALAITNLDLAGFAVSGGSACTAGSLHPSHVLAAMYGESSPRLRESIRVSFSRF TSEDDVTSFAAELADMCKRLV >gi|308165114|gb|AEHO01000027.1| GENE 54 43661 - 43831 170 56 aa, chain - ## HITS:1 COG:no KEGG:LJ0983 NR:ns ## KEGG: LJ0983 # Name: not_defined # Def: nucleoside phosphorylase # Organism: L.johnsonii # Pathway: Cysteine and methionine metabolism [PATH:ljo00270]; Metabolic pathways [PATH:ljo01100] # 1 55 174 228 233 65 67.0 7e-10 MEGAAFAQVASKFGVPLVALRAISDNAANEAAVDFDIFVKNVAKKAASIICDYLKN >gi|308165114|gb|AEHO01000027.1| GENE 55 43933 - 44325 409 130 aa, chain - ## HITS:1 COG:SA1427 KEGG:ns NR:ns ## COG: SA1427 COG0775 # Protein_GI_number: 15927179 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Staphylococcus aureus N315 # 13 112 21 118 228 67 43.0 8e-12 MAEEAEYYHTNFQFNEIKKYGITEYSHGFIGNNEVFIGLSGIGKVNAAMNITSLLVNEKI DLIFITGSAGALQTNIHQYDLVCPDAFRYFDAHNTMAGDYVEGQIPQEPAEYDLNSMLRD DFIKYLQAKK >gi|308165114|gb|AEHO01000027.1| GENE 56 44361 - 44612 229 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501540|ref|ZP_05744442.1| ## NR: gi|259501540|ref|ZP_05744442.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_05724 [Lactobacillus iners AB-1] hypothetical protein HMPREF9214_0235 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0349 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0800 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0217 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0388 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9216_0337 [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0312 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0176 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0127 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9214_0235 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0349 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0800 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0217 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0337 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9219_0388 [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0312 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0176 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0127 [Lactobacillus iners SPIN 1401G] # 1 65 1 65 83 92 100.0 9e-18 MTEKRSEYIKEKRKKALFGFFKKKGRHAADNSDLKDNISNDEVIDRPKLTKEEKSKRLKR FLNRAIIIELILLALVLLYLLKF >gi|308165114|gb|AEHO01000027.1| GENE 57 44605 - 45168 711 187 aa, chain - ## HITS:1 COG:SP0989 KEGG:ns NR:ns ## COG: SP0989 COG0494 # Protein_GI_number: 15900864 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 176 1 177 181 138 42.0 5e-33 MDIREEEISRKRIFSGKLIDLDVETISLPNGKTALREIVNHPDASATIAINNQNKMLLVR QWREAIKQETLEIPAGLIDDTDASPLDAMKRELNEEGGYRAEYWEKISEFYSSCGFCNEK LYLFYCDTLTKVENKRPLDDDEFLTQVWYSLDELKQLLAQGKIVDSKTVMAINLWENMVL TGNRKND >gi|308165114|gb|AEHO01000027.1| GENE 58 45174 - 45392 331 72 aa, chain - ## HITS:1 COG:no KEGG:LJ0980b NR:ns ## KEGG: LJ0980b # Name: not_defined # Def: cold shock protein # Organism: L.johnsonii # Pathway: not_defined # 1 69 1 69 69 107 81.0 2e-22 MRTGIVKQFDSRSPYGFIEDDLTGASYFVFYKSIKESGYKRLEVGQRVRYQLAQGKKGLQ CINVYVENNERG >gi|308165114|gb|AEHO01000027.1| GENE 59 45392 - 48178 3431 928 aa, chain - ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 928 1 932 932 1175 59.0 0 MKIKDTLNLGNTKFKMRGNLPVREAEWQKQWEDNNLYEQRLKLNEGHPRFDMHDGPPFAN GNIHMGHALNKISKDIIVRYKNMRGFYAPFVPGWDTHGLPIEQQLAKKGVKRKELNMAEY RQMCHDYALSQIEKQRQDFKRLGVMADWNHPYITFQPQFEAQEIRVFGEMYNKGYIYKGK KPVYWSWSSESTLAEAEVEYKDVEANSIFVAFKLIDGKDLLDTDNTYLIIWTTTPWTIPA NEAICVNPKFDYSLVQVNDKKFVVATGLLEKVAQEIGWDEYHVVKSFKGSEMEYMKAKHP IYDKESLVIEGFHVTLDDGTGLVHTAPGFGADDFNVGLKYNLPIFSPVDGQGNYTDEVPE LAGMFYQDVDKLMLEKLKACGALLKLKVFTHSYPHDWRTKKPVIFRATTQWFASIEPFRQ QILDEIDKVNFLPDWGKIRLYNMIKDRGDWVISRQRAWGVPLPIFYAEDGTPIVTPETIE HIAKIFEKEGSMAWFTKTAKELLPDGFTSSHSPNGEFTKEKDILDVWFDSGSSHTAVMAQ RPELSYPADLYLEGSDQYRGWFNSSLITSVAISGQAPYRQILSQGFVLDDKGHKMSKSLG NVIAPNDVIKQMGAEIIRLWVAGADTTSDVAVSQDILKQAAESYRKVRNTMRFMLANTSD FDPKKNTVPYDEMSGVDQYMEVKLNKLLAECLEAYDHYDFTSVYKNVFSFLSNDLSSFYL DFAKDVLYIESEDGQARRSMQTVIYDFLVKLAKLLTPILPHTMEEIWSYLKEPEKFVQLT DMPEVQHFANENVILSNWKRFMTLRSDVLKALEDARNKKVIGKSFEAHVILYPKADTAEL LESLNVDVRQILIVSDLTIENETKMPQNVEEFATAGIVVEHAQGDVCPRCRRTTNDFCKN GSLSNLCSRCADIVLKNYPQVSEEGLEE >gi|308165114|gb|AEHO01000027.1| GENE 60 48392 - 49219 943 275 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1197 NR:ns ## KEGG: LGAS_1197 # Name: not_defined # Def: cell division initiation protein # Organism: L.gasseri # Pathway: not_defined # 3 274 1 263 263 151 42.0 3e-35 MAMTITPMEIHDKVFPIVKNGYSAEAVDEFLDQIIDDYADVLDRNVDLKNENYKLKKQIR DASSDNTQIRQHMVEVQEQARQIVNQARVTAQQIIDDAKDKSDSMLADTQKQLVQQQNML EQYNTLMNDYELLKTEVANFIHDTKAKLNEQVKELDDKDWQIYLDKHYGRTRLYPADGSQ PIKTDDSDNLIDEEGLIKPEDIDKYQEYIPAENFDEDIDNNTDTEVNSDNEKEDTHKILE GDNPTVVETVEDENSNSDSLSRPKIIFPDDYKDHN >gi|308165114|gb|AEHO01000027.1| GENE 61 49325 - 50749 1389 474 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 471 6 473 474 382 42.0 1e-106 MKKLSACTTILVGKKATIDGSTMIARNDDTYSPITPQKFIIQKAEKNNKGRIIKSYLNNF QMELPENAQRVPAVPNVDYKKLGYYDESGINECNVAMSCTESTYGNERTLAFDPLVVDGL DEDCMQTVVLPYIKSARNGVEYLGELITKYGSAAGNSVLFGDKDEVWYMEIVTGHHWVAQ RIPDDCYAIAANRVSIENVDFTNADYFMWSDGIREFVDAHHLNPDHHGWNFRHIFGTYTE QDRHYNTSRVWYGQKYFNPDIEQDPQDGDLPFIRKANKLITQEDIEFVLGSHYQNTPYDP FGHGTDEEKHMYRPIGLNRTQNAHILQIRNDVDADKAGIMWLCIGGPTFTPFIPFFANMS DTDASFNNTSLTYNQNDAWWYYKSLASLVESHYPQFVQLNIKYLEELNRYYRGRIEEIIA NSEGLAGTKLTEYLTSENQKTVKHTKKLSDELFGKMFTESIKMSKLTFSMDKNL >gi|308165114|gb|AEHO01000027.1| GENE 62 50776 - 51681 816 301 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 1 301 25 324 336 318 53 5e-86 GLKKTSNSLGEKLNSFLAQFRTIDEDFFDDLEDLLIEADVGYETAEMLTDELRNEAKLKN VKDSKLLKNVIVEKLVELYEQNNTKDSKLILKTGDMPAVFLFVGVNGAGKTTTIGKLAKK LKDAGNSVMLVAADTFRAGAVEQLKAWGQRVDVQVISGNTNADPSSVVYEGLECAVKNHI DYLLVDTAGRLQNKVNLMNELDKINRTIHRKIPDQPQEILLVIDGSTGQNALNQAKEFDK TTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPVKLVGLGEKAEDLAEFDAEKFAIGLFHEL I >gi|308165114|gb|AEHO01000027.1| GENE 63 51675 - 51812 56 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKIGEVVMGLFNKLKEKLLGKTEENKDSEITKKTMIFKQHMIVA >gi|308165114|gb|AEHO01000027.1| GENE 64 51796 - 52731 992 311 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 14 307 897 1180 1186 243 48.0 3e-64 MKKSSQEKLTADLTELNTQLGKIDAELNQLESRASRDYELRKNLADNHKKLSIDITKLSD SIRHKLDILSQDYDISYEAALDMVEGEHNLQKQQDLAKDVKLHKMSIAEIGPVNLNAIDE YQEVKTRYDFLSEQQNDLLSARKNIEVSMSKLDNEVKKRFEDTFLKIAQKFKTIFPIMFG GGHAQLMMVDPKNILETGIEIVAQPPGKKLQSLSLLSGGERALTAITLLFAMLEVSPVPF CILDEVEAALDEANVVRFADFLNKYELKTQFIVITHRRGTMKKVNNLYGVVMQESGVSQV LSVSLTDDQNR >gi|308165114|gb|AEHO01000027.1| GENE 65 52746 - 54029 1074 427 aa, chain - ## HITS:1 COG:BH2487 KEGG:ns NR:ns ## COG: BH2487 COG1196 # Protein_GI_number: 15615050 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Bacillus halodurans # 2 397 447 840 1188 134 26.0 5e-31 MQQHEELAAKNNQKTKEYNLISQHGQKLQEQINHLQNILSQKQAQIDGLKKLQQRHDGYY TGVKFILNNMSKFAGAIGVVGDLLNFSPKLEAALITSLGSGVQSVVTIDKNSAKDAVELL KKYRAGRVTFLPLGGLRKNKIPDSTLRVIKSMDKVLGVAEELVTPTIDKDISEVINYLLG NVIIVEDMQTALQVQSKTGGYYRIVTLDGDIISPGGSITGGIRNQRTNSPLQINLQIAEL EDKVVVDLQKMKSLKQELSQFNDKIHQFDITIQEYQRQLLTLESEFNKSNLDYQGQKKEN DRLNQLLLLQTNAQKQKQNDIEKIKRQLVEQETLQKVIADKLVSQKSKMESLKREITQFD NDRQHLQAELADNSSKLAVANNKCANLQEQIKQNQEQALLVEKQLQSLAIKMHDLDAKKI IRKMKKL >gi|308165114|gb|AEHO01000027.1| GENE 66 54459 - 55349 517 296 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 277 1 277 1186 255 52.0 6e-68 MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN MRDIIFAGSEFRGPLNKAEVCLIFDNHDRQLHLDSDKVAIMRRILRSGDSEYFINNQSVR LKDIRTLFVDSGLSQNSLAIISQGKVDQILNSQAEDRRYIFEEAAGVLHFKQQKLVALKK LDETNNNLIRINDLVKELKARVEPLSEESSLAKQYKFEKKQLDLKLKQLLALEIESLVLR KKEIGSKLSDSKTNLDRIDEEVSRSQKDLETKRKNLNYYMNKKMIIRVLYYILHRR >gi|308165114|gb|AEHO01000027.1| GENE 67 55372 - 56049 801 225 aa, chain - ## HITS:1 COG:SP1248 KEGG:ns NR:ns ## COG: SP1248 COG0571 # Protein_GI_number: 15901109 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Streptococcus pneumoniae TIGR4 # 10 223 8 225 232 194 50.0 1e-49 MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK VIDSDEAQPKFTVQLIVAGENISQGIGRSKKAAEQVAASVALKNI >gi|308165114|gb|AEHO01000027.1| GENE 68 56184 - 57935 1913 583 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 564 1 576 600 374 39.0 1e-103 MKKFRLLSSLALLSGVALTMTACGGKSDNANVSTKAFKSAVPKKEVKKGGTLRQALTTNT PFTGVFLNELADTQDDSDVMSPANESLFYVDDSYGYNDEGPATIKMDVKKKTVTVKIKKG VKWSDGKQVCAKDYEYAYEIIANKDTQTSRYTESLQALKGLTEYHDGKAKTISGIEMPDG EKGLTVVLHYKEMKPGMRQSGNGFIWECAVPYHYLKDVPFKKLKESDKVRKNPLFFGPYK FSKIVRGQSATFVRNPYYWRGKPNFDKVVIQVLNPNNSSQALKSHKFDIIGVRNSQWKEV KNTKGVNFVGKVGLGYSYVGFKVGKWSAKKGKNIMNPKAKMNNKALRQAIAYGMNIAPVY KRYTNGLTFQIPTLIPKQFGAFYNGSVKPYTQDFKKANKLLDDAGYKKKGKWRVQPNGKP LVIHFAAMSGSAIQEPIIQNYLKQWHKLGLNVKLAGGRLMEMNSFYDKVMHDDPSVDMFM AAWGLSSEPSPNDLYNEKAPYNFTRFVTKKNSELLKAIDSTKAFNKKYRIAKFHEWQKYM ADELYVLPVANNWSITAVNSKISGYDASPSASCKFWMNCGFIK >gi|308165114|gb|AEHO01000027.1| GENE 69 58388 - 58681 378 97 aa, chain - ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 95 206 300 302 113 56.0 7e-26 MFREVLPNISSMIIIDVVLGVAGNIGIETALSFIGYGLPNSTPSLGTLIGFAQDPVNVTT RLWLWMPATVVLLALSLSFNYVGRALQRAGDARQREN >gi|308165114|gb|AEHO01000027.1| GENE 70 58645 - 59316 471 223 aa, chain - ## HITS:1 COG:L90358 KEGG:ns NR:ns ## COG: L90358 COG1173 # Protein_GI_number: 15673820 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Lactococcus lactis # 24 177 11 162 294 114 39.0 1e-25 MFSKKKKADVQATDNNSTPDLPPSAIKVVAREIVKDKISLLAFLVIALIFATTFIGSFAF SILHVDVTDTNIADAFYSWGQMGHILGTDDGGRDILNLLIVGGRNSIMIGLSVTFITEVI GLVVGVISGYYGGFIDAIIMRIIDFIQILPQLPIIIVLVSVIPNYNSVILVALISLLVGL ELLGIIEVLFYLKVVVNMSLLLKLQVQVIGRLCFVKFCLILAQ >gi|308165114|gb|AEHO01000027.1| GENE 71 59331 - 60293 1016 320 aa, chain - ## HITS:1 COG:BH3638 KEGG:ns NR:ns ## COG: BH3638 COG0601 # Protein_GI_number: 15616200 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 320 1 322 322 342 52.0 5e-94 MWKTVLRRILIMIPQLIVLSLLVFVLAKMMPGDPFSGQINPNQDPKTIAHLKQELGLNDA PWIQYCRWLGNVIHGDFGTSYIQHVAVTSLIWDRAVNTFWLSIVTVILSYSISIPLGIIA GHHQDEWQDQSIQIFNYITFAIPGFVSLILGLWLFGFTLGWFPIAGSVGTDCDSSVFAYI WSRFYHLILPAMLCAILSTTGTVQYLRTGIVDNKVEDYVRTARSKGVPEKVVFNKHILRN SLLPIAAFMGNTITGLLAGSVILETIFSYPGMGKLFLDSISQRDYTTLTALILLFGVLTL VGNLLSDIIMSIVDPRIRIK >gi|308165114|gb|AEHO01000027.1| GENE 72 60295 - 61263 753 322 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 2 269 8 275 329 294 52 1e-78 MAEEIIQIKDLKVHYPIRSGFWNRITDYVRAVDGVSLSIKEGETYGLIGESGSGKSTIGK VIVGVEAATEGQILYKGKDITKSRNRKKLNYNKDVQMIFQDSMSSLNPRKRIEDIIAEPI RNFENLTTDEERKRVQELLDIVGMPSDAIYKFPHEFSGGQRQRIGVARAVATKPRLIVAD EPTSALDLSVQAQVLNFMKQIQQQYNIAYLFISHDLGVVKHMSEDIAIMHRGRFVEIGKS TDIYNNPQHIYTKRLLSAIPIVDVNRREEHKRMRQRVEKEFQDNRDKWYDKDGRVYPLQQ ISDRHFVALPKDAINSELEGEK >gi|308165114|gb|AEHO01000027.1| GENE 73 61273 - 62277 586 334 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 8 325 11 328 329 230 41 2e-59 MEKQRDVLLDIEHLHTAYRLQGKFYDAADDINLTLKRNEILAIVGESGCGKSTIASSIIG LYDHKNTRVTGDIMYNELNLSDLNESLFNKIRGNNIGMIFQDPLASLNPLMRVGDQVAET LYYHTKLNEKARYARVIELFTQVGMPEPEKMYRMYPHELSGGLRQRVVIAIAIACKPEII IADEPTTALDVTIQAQILDLLKDIQKEMQAGIILITHDLGVVAETADQVAVMYAGQVVEK ADVKTIFEHPLHPYTRSLLNSMPQADDEKEQLHVIQGTVPSLKNMPREGDRFASRIPWIP ASEHEENPVIHEVEPGHFVRCTCWKNFHFQDQSK >gi|308165114|gb|AEHO01000027.1| GENE 74 62425 - 62667 297 80 aa, chain - ## HITS:1 COG:lin1920 KEGG:ns NR:ns ## COG: lin1920 COG0236 # Protein_GI_number: 16800986 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 75 3 73 77 64 54.0 4e-11 MSEEEIFNKIANIIEDRFEINRSNITLNLNFKNDLDADSIDFVEFVMDLEEAFGADISDE DAEKLKTVGEAVKYIYQRQN >gi|308165114|gb|AEHO01000027.1| GENE 75 62718 - 63719 1079 333 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 1 329 1 327 330 306 49.0 3e-83 MKKIAIDAMGGEHAPQAIVEAVLSLVKQLPQTKFILFGDKNKIENCLIGVKCERIEIVNT TEVIDDSDEPVKAIKQKGDSSMVVAAKYVKDGRADALFSMGNTGALLACGIFIIGRIKGV KRPALMPTLPSSSNKLGFNMIDVGANAQSKPEYLIQWAKMAELYAEKIRKIAHPRIALLN NGAEFDKGDVLHQEVYKKLLKEDLNFVGNIEGNELVSDKADIVVTDGFCGNIALKTLEGT SQVIVHEMKQSLLNNGIIVKLGALLAKHGLQSLKSHFDVARYGGAVLIGLNAPVVKTHGR SDKRPVYYTLLQIDKMLDEHLIDEFKKYFLNNN >gi|308165114|gb|AEHO01000027.1| GENE 76 63740 - 64726 793 328 aa, chain - ## HITS:1 COG:BS_ylpB KEGG:ns NR:ns ## COG: BS_ylpB COG1200 # Protein_GI_number: 16078650 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Bacillus subtilis # 2 321 347 667 682 331 48.0 1e-90 MKKKKIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMV DILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQ GFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSDIMDAFING SIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDPKT DSAKKRLKIISTCDDGFALAREDLKLRGEGDLFGQAQSGIPQFKLGDVINNYNIFTTAQK ESKILVHQNPELVGEEYDFLKLLMEYDD >gi|308165114|gb|AEHO01000027.1| GENE 77 64701 - 65762 888 353 aa, chain - ## HITS:1 COG:L0262 KEGG:ns NR:ns ## COG: L0262 COG1200 # Protein_GI_number: 15674226 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Lactococcus lactis # 9 353 3 347 666 252 40.0 1e-66 MGIVNLKVLLNPVSDLDGVGVKTAEALSQLKIKTIYDLLFYFPRRYDSLETFPLNELKDG QKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHDIIMVNFFNQPWLKKQLQKGNDIAIYG KYVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFINQAIEKYLPQLPEVIPQYLR DKYKLLDVQSMIIQMHQPKDLQQVKVAQRTAIFLEFFVFQLQLSQLLYANDQKNNGIAKK YDSSAINELKESINFQLSDDQIQAICEILADLASAKRMNRLLQGDVGSGKTIVAVFAIFA CITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSSTKLNEKKEDLS >gi|308165114|gb|AEHO01000027.1| GENE 78 65764 - 67389 1848 541 aa, chain - ## HITS:1 COG:SPy1885 KEGG:ns NR:ns ## COG: SPy1885 COG1461 # Protein_GI_number: 15675702 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pyogenes M1 GAS # 1 541 12 554 554 546 55.0 1e-155 MVRVATHRMGKNAEFVNKLNVFPVPDGDTGTNMNLTMESGARAVNENNSSCVGDLTKSLA KGMLMGARGNSGVITSQLFRGFYKSTEHKKVLTAQDLSQAFSNGVATAYKAVMKPVEGTI LTVARVAAEKGASKASETNDVIAVMKAIVSGAKDALKTTPDLLPVLKQVGVVDSGGQGLV FIYQGFLEGLMGKKVNDAFQLGENEMDELINVTHHQAESAQVQLSTGDIKNGYCTEIMVD LTASIADKKKFDLAEFRAYLSELGDSLLAVSDGDIAKVHIHTEYPAKIFAYGKQFGKLGK IKIDNMRIQHETIVENSKEQEESVDFAVIAVASGHGIRDIFKSEGVNRIISGGQTMNPST QDIIDAINKSGASKAIILPNNGNIIMAAKQAAEVANIPVGIVPTKTISQGLTAMLAFDPE VSVEENVTAMSSELDTVVSGEVTKAIRDTTIDDIEVKEGDYLGIIDGKIKIDDPDIISAS LRMIENMLDDDSEIVTLMYGSDANATQAEKIADKLRASHEDLEIEIHDGGQPVYYFLVSV E >gi|308165114|gb|AEHO01000027.1| GENE 79 67452 - 67811 503 119 aa, chain - ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 118 1 118 121 119 55.0 2e-27 MAVKIKTKYGLVDISSNVISTVVGGAATTNYGVVGMASKNALRDGAFAILNKENYRKGVV VKIDDNQIVVDVYIIVGYGLKISEVSRNVQDSVKYNLENLLGIKAKTVNVVVQGVKVLD >gi|308165114|gb|AEHO01000027.1| GENE 80 67987 - 68172 282 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519405|ref|NP_965335.1| 50S ribosomal protein L28 [Lactobacillus johnsonii NCC 533] # 1 61 1 61 61 113 91 4e-24 MAKDIITGCKTTFGNKRSKALNAVRRSWKPNLQKVRILVDGKPKRVWVSARTLKSGKVTR V >gi|308165114|gb|AEHO01000027.1| GENE 81 68348 - 69007 635 219 aa, chain - ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 4 213 3 214 218 191 51.0 1e-48 METFIHAYSWINLRFLLQGLMVTVYISIVSIILSFILGLFLGIVRYLKIKVISHIVGFIV DILRNLPLLLIIFFAYFGLPQLGIVTNVTCAAIIALVVFEGAMLAEIVRSGIGAVNKGQL EGALSNGMTYAQAMYHVVVPQALHFMIPAILSQFVSLIKDTSLATIIVLPELLYHAQIIY SQNTTYLLPMYVIVALMYFIICFTLSLIADHLQKQYSAK >gi|308165114|gb|AEHO01000027.1| GENE 82 69017 - 69655 497 212 aa, chain - ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 2 211 3 212 216 193 49.0 2e-49 MINILVNHWPQFMQGLSSTIMCSLIAIFFSLIIGVICALVEVSPCRIPHLIARIYVEIFR NIPLLIIVMIFYLVVPQMGLKLTGFGAGTIALTLYTSAFISETVKSGINSIGIGQMEGAR SNGMSYVQAMRYVVLPQALKVVIPPLGNQFISLIKNSSVLAFVAGFDLMYQADVISLASF ETVNTYVVVGLLYLVLTLPLSYYMRYLEEKLA >gi|308165114|gb|AEHO01000027.1| GENE 83 69652 - 70473 934 273 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 1 264 1 272 273 224 46.0 9e-59 MKKIHKILLAPFILFLLLFLGGCGQAKKVNVYQKVKQSRTMIWGTRADTRLFGYMDIKSS KIIGFEIDMAKAVTKQMLGKDAVAKFVQTTPKTRIPLLKNRNINAIWATMTITPERKKQV DFARPYIGAGASLLVPNNSKIKDVHQLNNKKVLAVKGTTAVADIKKVAPKAKVLEYDDYG QAFSALKAGQGVALTTDNCLLAGIASENPGFHLIGKNYTNQPYGIAVDKGQDELRDHINK ALLALKKNGTYHRLLVKWFDGIPGFNIKEAEIL >gi|308165114|gb|AEHO01000027.1| GENE 84 70482 - 71222 290 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 233 1 230 311 116 31 5e-25 MSSIIEFKHVNKYFGKLHALKDINLTIDEGQVVSIIGPSGSGKSTLIRTMNGLETIDSGQ LIVDGYDVTDKHTDINKIRRDVGMVFQHFNLYENHTVLENITLAPKIVLKRPDAENEKIA MDLLRKVGLEDKAQQYPRNLSGGQKQRVAIARSLAMRPKAILFDEPTSALDPEMIQDVLD VMKYVAEQGITMVVITHEMGFAREVANRLIFFENGQVLEDTDPEKFFNHPETERARQFLS KVISTK >gi|308165114|gb|AEHO01000027.1| GENE 85 71394 - 72482 1072 362 aa, chain - ## HITS:1 COG:lin1180 KEGG:ns NR:ns ## COG: lin1180 COG1363 # Protein_GI_number: 16800249 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Listeria innocua # 4 359 2 358 359 187 34.0 4e-47 MKKEQEIKMLKEFSNANSTSGFEEEFVKLFATYAQDIANVEIDGMYNLYASKKENQGNRP VIQIDAHSDAVGFITQAVRPNGLIKFVPLGGWVKYNIPSLKVRIRNKEGEYISGVVATKP PHFMTAAERNTTPDIASMSIDVGSCSREETINDYKIDTGCPIFVDVECAYNPKTGLFFGK DFDDRFGAGAMISILDNLKNEKLNFDLVCALSAQEEVGLRGAYVTARKVKPDVCLVLESC PADDTFEPEWLSQTGLKRGPMLRDMDTSFLPNPRFQQYACQLADQLNIPYTRSVRTGGGQ DGAAIYYENGAPTIVIGIPVRYEHSPYCFSAYTDFKASVDLATALVRDLTVEKLNSFKLQ SL >gi|308165114|gb|AEHO01000027.1| GENE 86 72649 - 73848 936 399 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 8 393 4 390 402 347 46.0 2e-95 MNKQEIIFKQNLFVLAIAVFIAGIGFSEALPFLPLYIKTLGTFTHKELNFWVGFTFSTTY FVSALVSPWWGKLADQRGRKLMILRSSIGMAIAIGSMGFVTNVYQLFCLRMLQGFFAGFV SNANALIATESPKNQAGKAMGTMAASFTAGNLLGPLLGGLLASMFTYHFTFLLTGILLFI SFILSFLFVKEEFKPISKQSVITNKQVINSLKSSNLIFGLLLTTIIIQTANSSINPIVAL YVANLMHNQGNTIFVAGIIAALPGIATFLAAPRFGELGDKIGTHKIIIGGLISAIIFFFA TAFVTNAVQLGFLRFLIGFSDACLFSQVQTMLAKNSSIQTTGRIFSWNQSAMYIGNIFGP LVGSTVAGFFNYNVLFIVTAALVGINLLLFHINVVKNIN >gi|308165114|gb|AEHO01000027.1| GENE 87 74046 - 75356 1062 436 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 13 434 5 435 447 413 49 1e-114 MNKENFHNDDAILDVYEKPNLSQGVLLSLQHLFAMFGSTVLVPILVGLDPSIALLASGVG TLVHMILTHFKIPAYLGSSFAFIATMQALMKADGYPAIAQGAIAAGLVYLVVAYVVSKIG SVWVDKVLPPIVVGPVIIVIGLSLATTAANDAMLHNQKYNLIYFLVAIFTLVVTLCFQMF FKGFTSLVSILLGIICGYILSCCLGIVNFSGVAKAAWFTFPALDVPIISYKLKLYPAAIL TMAPISFVTMSEHMGHIMVLNSLTKRDFFKNPGLHRTLLGDGLSTITAGFIGGPPTTSYG ENIGVLAMTKVHSVWVLAGAAVFAIIFSFIGKIAALIESIPMPVIGGISFLLFGTIASNG LKILVDDKVDFSEKRNLLIASVIMVVGIGGAYLQLGNFQLTSVALSTILGMILNGILPKH AAIEQQLAEKEGTKII >gi|308165114|gb|AEHO01000027.1| GENE 88 75410 - 76210 774 266 aa, chain - ## HITS:1 COG:SP1063 KEGG:ns NR:ns ## COG: SP1063 COG0842 # Protein_GI_number: 15900933 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 226 1 226 266 188 46.0 7e-48 MKPTDFRKKSNLGLYGLELLIKYETKAFFENKGSVLSLLLTPILFFVFISTGISRMTGNV IYAGMKVSYLEYSYLGIMIYLVLGQMSQTIYRTTIDKRYGLLALKLLSGIKPFYYVIGMS TYAMLGLSVQMFALIILANFFGIHYSLMKIGVMIVIIILTLLFWSALAVAITLRISNYQV RDNILSFVITPLSFTAPVFYVLDYAPLWMKWLAKINPVTYQLGALRQGVMLNQYFQSIII LLVFALAATALSSNLVAKSKLNLTEY >gi|308165114|gb|AEHO01000027.1| GENE 89 76197 - 77126 296 309 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 3 303 9 308 309 118 25 9e-26 MKISVNNLAIKYQDHYGIKNISCELTAGKFVALVGHNGSGKTTLCNALVGLLEPSEGDIN IQDLSTDKQNFSTIGFAPQSQVVDWYSNVEANIMLGAQLAHLKPNEAKNQLDLILRLLDL SDLRDRSLTDLSGGQLQRVQIARAIVHNPLIYILDEPTVGLDAQNTDNLMKYLVKEAQSG KLVIVSSHDLFLLQEYAEDLLLLDEGKLIYHGSINDLLKARGNSRKFLITLDNEYSVADD FMVKNDDVIRVEHESDNTWQLEVKPEVTISDLMLMFKKEIKVTSCVEHEKTLKEVYLSMS KRSGNYETN >gi|308165114|gb|AEHO01000027.1| GENE 90 77368 - 78504 1160 378 aa, chain - ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 372 105 477 486 166 28.0 5e-41 MGIGAGGMGSLPYIIVGYIYPNIKQRTKALGILTSGFNAAAIVGPLIGGWIIDISSWHWI FYINIPIGLLAMLLTAIFYKKESISKFSKFDTVGSALLVTGLITFLLGIQLLGLVSVWLV ICCLIISLLIMTYFFIHENKEENPVLPLSLFTNKNLIGDFLLFALTWGAFIAVNVYLPMW AQAFLGMTALIGGMTLIPNSCFSIVASQFVYVLQGRTKTYYIILVGIIGMLISSFSLLIA DLSIPLWILIFTSAFSGMGVGFIFVELQVKVQVDAGREHMADATSTSYLIRILAQTVMAA IYGVIMNLSLNQGIKAHPQITLSMLNKMSDCRTASELPAKLLPLMRAISHSGIRVIMLVS CLLLVISLVINYKFNPRH >gi|308165114|gb|AEHO01000027.1| GENE 91 78567 - 78815 243 82 aa, chain - ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 77 1 77 486 67 44.0 5e-12 MTKNQLKFLTIALILGNIMSGLDSTIINTAIPSIVANLHGIQFMGWIIAIFLLGMSISIP LWTKVAERIGNKNAFLVTLSFL >gi|308165114|gb|AEHO01000027.1| GENE 92 78925 - 79686 173 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 26 229 147 340 398 71 29 2e-11 MNKPIFELKNVTVLGNKNSSNVTKILNNLSLTINDGDFITVIGTNGAGKSTLLNVISGAL AIDDGIILHNGRDITNLSEEEHTKFLSRVFQDPQLGTAPRMTVAENMLLALKRGERRFLV PRKLKQNRERFLKLAKMMHNGLEDRMDTFTGNLSGGQRQALSFLMAILKKPDILLLDEHT AALDPHTSQSLLNATREIISQDKITALMITHHLEDALNYGNRLLVLKQGKIIADLDHNAK IKLTTDDLYRYFE >gi|308165114|gb|AEHO01000027.1| GENE 93 79679 - 80578 968 299 aa, chain - ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 3 299 1 288 288 244 50.0 2e-64 MNLMVSAIGQGLLWGLLGLGLYISFRILNITDMTVEGTFPLGAVISVTLISHGFNPLLAT LIAFLGGMFAGLITGLLYTKGKIPPILAGILVMTAIYSINLRIMGRSNISLLGCKTLFSN KFLLRLPKYFDNVFLGLTVMVVITTIVILFLQTDYGQAFIATGDNPKMAKSLGIKTDNTI IAGLMGSNGLVAVCGALIAQSNGYADINMGLGTIVIALASIIIGEVAFGELTLNQRLVAV TLGSILYRLIILCVLQLGFSTNDLNLLSSIVLAICMMIPRFDKLFKIKKTILRSVKSSE >gi|308165114|gb|AEHO01000027.1| GENE 94 80578 - 80934 447 118 aa, chain - ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 118 231 344 344 85 43.0 2e-17 MLNEVDAVIVPTDNTIAGAMQTLVKNADAVRKPIFPAVDTMVKQGGLATYGINQNYLGVL IARLVVDILKGKKKIATTPIQYVRHGIPILNLKKANQLGIKIPVDFLKECIKEGEVFE >gi|308165114|gb|AEHO01000027.1| GENE 95 80924 - 81574 714 216 aa, chain - ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 2 207 14 224 344 131 33.0 1e-30 MKRLYTLVAILLIILSVAFVNQKTESKPKHNMPVVGVLTLLHHPALDQIYDGFVKEMAKQ GYHKGKNYKLEYQNAQGDQSNLEIMSKKLVNMSPDILVGITTPASQSLAHATSSIPIVLG AVTNPKKAGLVANNDHPNTNISGVSDQAPVEEQLKLVKKLMPKNAKVGIIYTSNDSSAVT EHDLFVKIAKKYHVNLKSYSIANSNDLNQVSQKNVK >gi|308165114|gb|AEHO01000027.1| GENE 96 81968 - 83185 1322 405 aa, chain + ## HITS:1 COG:no KEGG:SAG1837 NR:ns ## KEGG: SAG1837 # Name: not_defined # Def: prophage LambdaSa2, lysin, putative # Organism: S.agalactiae # Pathway: not_defined # 259 371 3 112 468 90 44.0 9e-17 MKKRKFVRNLSKGLILSVATLCGESLLNVQQSKADTRTSMNGSTLRIVYNGRGKVNLLNS KFKYQNQYVANGTNWKVWEKLVSNQGTLYRIGNENQWVPEQYTDKKSTTQAPKKPTTNTN NNVHAKTTLPTANVVKIKAATGVNVYTAPVNGRYVKHLNPNTSWKYFKIEHGNDGYTWFN LGGAQWISSKLTDQPQLVKNISRVTQAPKTVEKAKTISKAKSTYNPVQNLTNIYIPKHVY IPKHNNMSIYDMGLNNGPVNIDSAISFMRQLKNNGVQYSMFGKRDGSDGTADCSGAVYAA LRAGGASSLGYIPNTDSMHNWLLKNNFTEVAHSTRIPNQKGDVVIFGAKGLSGGAAGHVV LYTSPYTIIHCTDRDDSHSGVLEEPASNIEGCYTSMGGFYVYRQI >gi|308165114|gb|AEHO01000027.1| GENE 97 83224 - 84450 1058 408 aa, chain - ## HITS:1 COG:SP0342 KEGG:ns NR:ns ## COG: SP0342 COG0366 # Protein_GI_number: 15900272 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 30 407 157 534 535 446 56.0 1e-125 MDMNQMSCNLHSLVLHGNMMKLPNNIICTFFAKQQPDLNWSNSIVRDKIYQMMNYWIDKG IGGFRMDVIELIGKEPDKMVRENGKMLHPYLQEMNQKTFGQSDLLTVGETWNATPKIAED YSDPARHELSMVFQFENQTLDQKDGCSKWDLKPIDLVELKKILVKWQTELDFKHAWNSLF WENHDIPRVISRWGNDQKYRVVCAKMFAIVLHLMHGTPYIFNGEEIGMTNSPVKNINEVE DIESINMYNERLDAGYDKDELLHAINVKGRDNARTPMQWSDALNAGFTSGNPWLRVNSNY TDINVKQCLADPDSIFYTYQKLIELRHHNQIVVDGDFQLIEETDAQILAYYRILGDQKLL VVANLTDKEKPFNCQEQYQKVLVENYTTPSNLQNIILKPYQAFVVTIA >gi|308165114|gb|AEHO01000027.1| GENE 98 84341 - 84844 519 167 aa, chain - ## HITS:1 COG:SP0342 KEGG:ns NR:ns ## COG: SP0342 COG0366 # Protein_GI_number: 15900272 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 4 164 5 160 535 243 73.0 8e-65 MTPWWKKAVIYQIYPKSFQDSNGDGIGDLPGIITRLDYLAKLGIDAIWLSPVYQSPGIDN GYDISDYQAIDPQYGTMDDMDNLILEAKKRHIKIIMDLVVNHTSDQHAWFVEARKNKENP YRDYYIWRDPVDGHEPNELQSAFSGSAWQYDETTKQYYLHFFCKATT >gi|308165114|gb|AEHO01000027.1| GENE 99 84904 - 85935 207 343 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 145 337 4 210 245 84 26 2e-15 MQKRLSDLLNLFPIANLLNRNIFELSGGERQILSIATAYISGVQCVLLDEPSANLDSKYI KIVAKMLAILKKRGVTLLVAEHRLYYLMDVADRVLVVANGTISQEYSISKFKQLSEKQLY AMGLRTRQEVQLKSFSPMTSGEFYIKSLYKKLIHHQVLKIRDLSLKKGNIYGIVGLNGSG KTSLIKALLGVDKKCQVAIYLDDKLLSTRQRIKLSSWVMQDVNNQLFTDNVMAEIKLGTG NISADKVNQVIKKLKLSSLLDRHPLSLSVGQKQRVAIASTILSQKTLLYFDEPTSGMDYL NMIAISKLLRDSSTNNNIIIIVSHDVEFLNQTVDHVIKLSSNG >gi|308165114|gb|AEHO01000027.1| GENE 100 85962 - 86282 108 106 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 89 4 90 223 46 31 2e-12 MLMIRNAYLSYPDRKIVLKNLNLTIKTGECVVLTGISGSGKSSILNLINGLATRYDNCKI GGEVLFQHHDIVKLELYQIAQLIASVFQNPKTSFFNVNTTMELLFF >gi|308165114|gb|AEHO01000027.1| GENE 101 86276 - 86965 449 229 aa, chain - ## HITS:1 COG:SP1437 KEGG:ns NR:ns ## COG: SP1437 COG0619 # Protein_GI_number: 15901289 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pneumoniae TIGR4 # 84 225 1 142 147 140 47.0 2e-33 MQFIHDDNRHNLHPLTKFFAVICLSFTPFYRVSVLYCWVVVATIAILFALQFNYRDAIKA VIYFGFLSLLPSDMNFRHIGLIHVLFSLILIIKAFYLPCLSAKLLIKTTDVGSLLSALSQ INIPRTIRIPIAVIFRFFPSFKQEYQNMHLAMKVKNITWRTPIKYITYMWIPLLILSSNI ADDIAKVAETKCIYNPIKRTHYFSIKFGLMDILYLLSLLLLVTKGCKLC >gi|308165114|gb|AEHO01000027.1| GENE 102 86965 - 87573 613 202 aa, chain - ## HITS:1 COG:no KEGG:FMG_1400 NR:ns ## KEGG: FMG_1400 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 202 1 194 194 108 39.0 2e-22 MENSKLKVKDLVNIGVFVVIYFLILGISSMTFVFLGMTMVKSTLALLCFALAPFVTGIIL GTPVILLMAKLQKPWGFFTFGILSPILLWLSGHNSFIPAVGGVLLAAVAEFILYLGKYKS FKAMLIAYACYNIWTMLPLADILFVRAKRLKMIQKMGLALVNNVFTTPNVLLILMFALVG GVLGALLGKKMLKKYFTKAGIL >gi|308165114|gb|AEHO01000027.1| GENE 103 87699 - 87854 112 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805534|ref|ZP_07699579.1| ## NR: gi|309805534|ref|ZP_07699579.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] # 1 51 1 51 51 84 100.0 4e-15 MKVRYLGNTEGISLTKNKIYEALDYEEGFLRVIDDTGEDYLYDFEKFQVIE >gi|308165114|gb|AEHO01000027.1| GENE 104 88028 - 88183 145 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLSKKEIEEAYLARLESETRQPETEEQRKLAEERRRKLKEVLKILQEQDN >gi|308165114|gb|AEHO01000027.1| GENE 105 88170 - 88478 166 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805567|ref|ZP_07699612.1| ## NR: gi|309805567|ref|ZP_07699612.1| hypothetical protein HMPREF9213_0399 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0399 [Lactobacillus iners LactinV 09V1-c] # 1 102 1 102 102 189 100.0 9e-47 MKNELQQDIIFYRKEYYVKDLEKPINKFFSTSVTTKGVIGGVPNLAIKVPKETFGAYIEL LSHIDYKKQREFLINGGFNLDKISDDRGLLIYKVRGESNETK >gi|308165114|gb|AEHO01000027.1| GENE 106 88475 - 88660 207 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501600|ref|ZP_05744502.1| ## NR: gi|259501600|ref|ZP_05744502.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_05380 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners DSM 13335] # 10 51 27 68 180 73 85.0 4e-12 MLKKLSISNRAITQYTYNGKDKDGLRLFEKINGYLSGYYVPISTSESDMLDIKAPVFKIV Y >gi|308165114|gb|AEHO01000027.1| GENE 107 88802 - 88999 190 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653345|ref|ZP_07906267.1| ## NR: gi|315653345|ref|ZP_07906267.1| minor capsid protein [Lactobacillus iners ATCC 55195] minor capsid protein [Lactobacillus iners ATCC 55195] # 1 65 84 148 148 128 100.0 1e-28 MFTKEEIKYMKSLGLNLDFHKPLLNEDYERIEDIVSHQLQVYGFDKNYNPTTIGILCENI LDKFD Prediction of potential genes in microbial genomes Time: Wed Jul 13 03:03:06 2011 Seq name: gi|308165109|gb|AEHO01000028.1| Lactobacillus iners LactinV 09V1-c contig00010, whole genome shotgun sequence Length of sequence - 2080 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 73 - 792 905 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) 2 1 Op 2 . + CDS 835 - 1152 336 ## SPJ_1901 cI repressor 3 1 Op 3 6/0.000 + CDS 1179 - 1640 668 ## COG1396 Predicted transcriptional regulators 4 1 Op 4 . + CDS 1648 - 2080 234 ## COG1396 Predicted transcriptional regulators Predicted protein(s) >gi|308165109|gb|AEHO01000028.1| GENE 1 73 - 792 905 239 aa, chain + ## HITS:1 COG:L0250_2 KEGG:ns NR:ns ## COG: L0250_2 COG1974 # Protein_GI_number: 15672420 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Lactococcus lactis # 81 239 36 191 191 89 35.0 6e-18 MPRNKLSPFEQNARKEISSNLKKFMHGMTQADLAEKSDIPLTTLSGYLREKSTPNSGNLE KLAIALNVKKSDIDPRYTFTDIMDFVEKAPLGEYISPVSNVEYLYNTDTVVKQIPLLGDI ACGDPITADENIEDYIPETYTRGNVPSGTLFALKTKGHSMEPTIPDGSIVIIRQQPNVED GEIAAVLVDDDARATLKRIKHSNDTVILQPDNREYDPIVLTPNFPGRILGKAIEVKTKL >gi|308165109|gb|AEHO01000028.1| GENE 2 835 - 1152 336 105 aa, chain + ## HITS:1 COG:no KEGG:SPJ_1901 NR:ns ## KEGG: SPJ_1901 # Name: not_defined # Def: cI repressor # Organism: S.pneumoniae_JJA # Pathway: not_defined # 3 104 2 110 250 103 58.0 2e-21 MNNILGSVIKEIRKDKKITQSELARLTGFKQNTISNHENGKRSLDECDIYTYAKALNVSP QTFFDKYTNQDKDILSIYNQLHDERQAKVYNYAREQLDEQLNEKR >gi|308165109|gb|AEHO01000028.1| GENE 3 1179 - 1640 668 153 aa, chain + ## HITS:1 COG:SPy2125_1 KEGG:ns NR:ns ## COG: SPy2125_1 COG1396 # Protein_GI_number: 15675873 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 80 1 80 152 81 55.0 5e-16 MVKHAPQYYENLNYFNTQLNHLMSVHGTKQVDLVNALDIPKTTINGYVKGTSLPNMGNLQ KLADYFNTLKSDLDLRFKKDADKHLPVYNQLTDIRKHKMIKMSNLDNKETMAQNIKYYLK QKGVSRHKLCDDLNIKYTTFLHLVTSRRLSSHR >gi|308165109|gb|AEHO01000028.1| GENE 4 1648 - 2080 234 144 aa, chain + ## HITS:1 COG:SPy1861 KEGG:ns NR:ns ## COG: SPy1861 COG1396 # Protein_GI_number: 15675680 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 54 119 8 73 124 77 68.0 8e-15 MMANYFNISKANLVEDKDAIKNDITTIYNQLHEKRQAKVYNYAREQLKEVVDMFSTNLKY LRKKYNMEQLELAYKLGRKSGSTISEWEKGSYTPKIKVLAQIADIFHVDLDDLMNKDLTN SQTKVDKDSLVEQIAETSSLLHIS Prediction of potential genes in microbial genomes Time: Wed Jul 13 03:03:19 2011 Seq name: gi|308165076|gb|AEHO01000029.1| Lactobacillus iners LactinV 09V1-c contig00013, whole genome shotgun sequence Length of sequence - 31962 bp Number of predicted genes - 31, with homology - 31 Number of transcription units - 15, operones - 8 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.250 - CDS 123 - 452 327 ## COG0249 Mismatch repair ATPase (MutS family) 2 1 Op 2 . - CDS 358 - 2688 2540 ## COG0249 Mismatch repair ATPase (MutS family) - Prom 2719 - 2778 6.0 - Term 2722 - 2790 11.4 3 2 Op 1 41/0.000 - CDS 2831 - 4465 1579 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 4 2 Op 2 . - CDS 4491 - 4763 414 ## COG0234 Co-chaperonin GroES (HSP10) - Prom 4832 - 4891 5.9 5 3 Tu 1 . - CDS 4901 - 5530 795 ## COG2344 AT-rich DNA-binding protein - Prom 5595 - 5654 7.9 + Prom 5618 - 5677 12.2 6 4 Tu 1 . + CDS 5778 - 7631 1579 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 7637 - 7679 4.2 - Term 7625 - 7667 3.4 7 5 Op 1 . - CDS 7687 - 8223 567 ## gi|309805591|ref|ZP_07699634.1| hypothetical protein HMPREF9213_0650 8 5 Op 2 . - CDS 8210 - 8863 301 ## gi|309805604|ref|ZP_07699647.1| hypothetical protein HMPREF9213_0651 9 5 Op 3 . - CDS 8856 - 9776 465 ## RBAM_034800 hypothetical protein - Prom 10024 - 10083 7.3 10 6 Tu 1 . + CDS 9819 - 9980 145 ## gi|309807421|ref|ZP_07701384.1| hypothetical protein HMPREF9211_0443 + Term 10015 - 10057 4.2 - Term 9997 - 10053 3.5 11 7 Op 1 24/0.000 - CDS 10103 - 13270 3656 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 12 7 Op 2 7/0.000 - CDS 13263 - 14345 1028 ## COG0505 Carbamoylphosphate synthase small subunit 13 7 Op 3 15/0.000 - CDS 14345 - 15622 1508 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 14 7 Op 4 8/0.000 - CDS 15622 - 16563 915 ## COG0540 Aspartate carbamoyltransferase, catalytic chain - Prom 16609 - 16668 2.7 - Term 16578 - 16615 5.5 15 7 Op 5 . - CDS 16702 - 16968 331 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 16 7 Op 6 . - CDS 16958 - 17245 403 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 17 7 Op 7 . - CDS 17291 - 18211 1216 ## COG0167 Dihydroorotate dehydrogenase 18 7 Op 8 . - CDS 18217 - 19491 1344 ## COG0477 Permeases of the major facilitator superfamily - Prom 19511 - 19570 5.7 + Prom 19528 - 19587 12.9 19 8 Op 1 9/0.000 + CDS 19706 - 20413 988 ## COG0284 Orotidine-5'-phosphate decarboxylase 20 8 Op 2 . + CDS 20415 - 21050 765 ## COG0461 Orotate phosphoribosyltransferase + Prom 21061 - 21120 6.4 21 8 Op 3 . + CDS 21144 - 21794 483 ## COG0406 Fructose-2,6-bisphosphatase 22 9 Tu 1 . + CDS 21906 - 23111 530 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 + Term 23124 - 23162 0.0 - Term 23101 - 23160 13.1 23 10 Op 1 . - CDS 23229 - 23942 494 ## gi|312870708|ref|ZP_07730815.1| putative membrane protein 24 10 Op 2 . - CDS 23980 - 24639 648 ## COG1131 ABC-type multidrug transport system, ATPase component - Prom 24856 - 24915 10.7 - Term 24896 - 24944 9.1 25 11 Op 1 1/0.250 - CDS 24989 - 26272 1266 ## COG0015 Adenylosuccinate lyase 26 11 Op 2 . - CDS 26276 - 27565 1719 ## COG0104 Adenylosuccinate synthase - Prom 27730 - 27789 7.3 + Prom 27668 - 27727 5.0 27 12 Tu 1 . + CDS 27775 - 28749 741 ## COG0516 IMP dehydrogenase/GMP reductase + Term 28796 - 28836 2.5 28 13 Op 1 3/0.250 + CDS 29147 - 29569 571 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases + Prom 29583 - 29642 1.8 29 13 Op 2 . + CDS 29708 - 30877 807 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases + Term 30885 - 30942 10.2 - Term 31020 - 31062 5.2 30 14 Tu 1 . - CDS 31147 - 31407 276 ## COG0157 Nicotinate-nucleotide pyrophosphorylase - Prom 31532 - 31591 3.8 - Term 31568 - 31614 15.1 31 15 Tu 1 . - CDS 31649 - 31915 348 ## gi|302190937|ref|ZP_07267191.1| hypothetical protein LineA_02860 Predicted protein(s) >gi|308165076|gb|AEHO01000029.1| GENE 1 123 - 452 327 109 aa, chain - ## HITS:1 COG:BH2369 KEGG:ns NR:ns ## COG: BH2369 COG0249 # Protein_GI_number: 15614932 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 4 106 747 865 865 69 36.0 1e-12 MDILIFLHKILPGAADQSYGIHVAQLAGLPTKVLREATHMLKQLEKHSDNQAAFSDEQLD LFGSSDQHKMSDEEQDVLTQIKNLYLNEITPLQVMQLVANWQDELKNKE >gi|308165076|gb|AEHO01000029.1| GENE 2 358 - 2688 2540 776 aa, chain - ## HITS:1 COG:BS_mutS KEGG:ns NR:ns ## COG: BS_mutS COG0249 # Protein_GI_number: 16078767 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus subtilis # 6 754 5 749 858 778 53.0 0 MAEKITPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKP IPMAGVPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGTVINDNPD QAKESNYLTSLCSSSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGEALT SDKQIFLKKAGITLSQPVKLSKEHAEVSYVTQQLHNQLEIAATKQLLAYLLATQKRSLAH LQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTSTAMGGRLLKSWIER PLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVALGSANARELLQLAD SLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIVENPPLSTKEGGIIKAGVS SQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGYYIEVTNSYKDKVPLDRY MRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYELFTNLREDIKKYIPALQKLAKQL SSLDVLATFSLLSEQNNYVCPQFSQDSSAINIVNGRHPVVEKVMSDEEYIPNDVKMDEQT NIFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISGK STFMVEMSEANIALNNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT HYHELTDLDQELAHLKNIHVGATQENGHFNFFTQNFTWCSRPIIWNSCCSISRVAN >gi|308165076|gb|AEHO01000029.1| GENE 3 2831 - 4465 1579 544 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 543 3 541 547 612 57 1e-175 MAKDIKFSEDARSSLLRGVDKLANTVKTTLGPKGRNVVLEKSYGAPDITNDGVTIAKNIE LKDHFENLGAKLVAEVAQKTNDIAGDGTTTATVLAQAIVREGMKNVTAGANPVGIRRGIE IATKAAVAELHKISHEVSSKAEIAQVASVSSASTEVGELIADAMERVGHDGVITIEESKG IDTELSVVEGMQFDRGYLSQYMVTDNDKMEADLENPYILITDKKISNIQDILPLLQEIVQ QGKSLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVIS SDLGLELKDTKIEQLGTAGRITITKDSTTIVEGAGSKDAISERTEQIKKQIADTTSDFDR EKLQERLAKLSGGVAVIKVGAATETELKEKKYRIEDALNSTRAAVEEGYVAGGGTALVDV MKAIDNNVKADTDDAKTGVKIVLAALSAPVRQIAENAGKDGSVILDHLLHADLEIGYNAA TDKWENMVTAGIIDPTKVTRSALQNAASIAALLLTTEAVVADEPEENKAQCPCPTNPGVP GMGM >gi|308165076|gb|AEHO01000029.1| GENE 4 4491 - 4763 414 90 aa, chain - ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 90 5 94 94 89 54.0 1e-18 MGDRVIVKVKDEEEKNVGGIVLASNAKEKPQTGEVVAVGQGARDANGNLIPMTVAKGTEV FFDKYSGTNLKYEGQEYLVLHEKDILAYIK >gi|308165076|gb|AEHO01000029.1| GENE 5 4901 - 5530 795 209 aa, chain - ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 2 207 4 209 215 244 57.0 1e-64 MDESNIPGATAKRLPLYYRYLIFLDDAGKKRVSSAELAEAVQVDSVSIRRDFSYFGALGK PGYGYEVKGLLSFLKKILNQDILTNVALVGVGHMGHALLNYNFKRTNNIRISAAFDINKK ITGRILCGVPVYDINEMHQQLQDQQINIAILCVPQDVAQKTADEMITAGIKGIMNFTPIR LIVPHGVRVQNVDLATELQTLNYFLNSRK >gi|308165076|gb|AEHO01000029.1| GENE 6 5778 - 7631 1579 617 aa, chain + ## HITS:1 COG:L73239 KEGG:ns NR:ns ## COG: L73239 COG0488 # Protein_GI_number: 15673044 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 4 616 24 635 635 514 45.0 1e-145 MLIFSISDNARIGLVGPNGAGKTTLLKIMTGQQEPSGGNFTINKDIIVGYIAQENGLNEN NSIWEEMLTVFASLVDKSHKIEQLQIDISNDPENQDLLKQYDQLSYSFEQAGGFTYPAEI KSVLNGFKFFKDSWHKKISTLSGGEKTRLAFVKLLLKKPPLLLLDEPTNHLDLDTLEWLE GFLKNYKGAILTVSHDQYFLDNLTNEIFELNFGKLTTFKGNYTQYVQERELINRQQEAAF EKQQEQIKRDEEFIQKNIVRASTTKRAQSRQKRLDKIERITLPQHKQKVRINFNAERQSG KEVLILKDVTIGYPDKIMVKNINFQVNKGDRIAIIGPNGIGKSTLLKTLMHKLEPKAGTI KYGAGLDIGYYDQELQSLDFKQTVLDTIWNRHKTMPESEVRSILASFLFNAKDIEKTVAQ LSGGQRARLTLTVLSMEKDNFLLMDEPTNHLDIEAKEVLEQALDNYDGTLLFVSHDRYFI NELANKIIVINNGTAKLYNGNYHYYLDELTKQNAIEASKQEEIIANEDNSGKLSYAEQKE RNSQKRKLERDVQNAEKKIAELEEKEKDIQLKMADPIISASFEKLGPLQEELSQIQSELE KANETWEEAMLNLDEFE >gi|308165076|gb|AEHO01000029.1| GENE 7 7687 - 8223 567 178 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805591|ref|ZP_07699634.1| ## NR: gi|309805591|ref|ZP_07699634.1| hypothetical protein HMPREF9213_0650 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9217_1299 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9213_0650 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9217_1299 [Lactobacillus iners LEAF 2052A-d] # 1 178 1 178 178 312 100.0 9e-84 MNKNKDVTVELVHIENWLNKHENVLDKDDLQILNILNKTSFSEFQDNLRYKLNHRKLEDI IIDNSLSDEDKVSYIVAIKDNVEGINQFVLEGYLLFLGKRYEIKLATIVAYVLLEKYGIS KLLTQFIQFLILNTDFDGSVGIINPLRNTISDDIYPIWKYGNTYFSYLFLAKAIKHDL >gi|308165076|gb|AEHO01000029.1| GENE 8 8210 - 8863 301 217 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805604|ref|ZP_07699647.1| ## NR: gi|309805604|ref|ZP_07699647.1| hypothetical protein HMPREF9213_0651 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0651 [Lactobacillus iners LactinV 09V1-c] # 1 217 1 217 217 376 100.0 1e-103 MNRYEHIIIKKLNESEIDEDLLNSITNMIDFYLVSKVANSSIEKLIFNIIYSIVGGQDNI RAVINTNPFKLDKFIMWANFLVTFFNDQDFSQIFYNEVQALKRQNFISEFELSDDFFEKV KGNCISTNDENRITIPQKDISLINFGPLLYEGNLNIHNLNLSDSDKKILLYYYYCISDWS NVLYLSLSLKCKLKQNINLEDCNIEQILGVWLLNEQK >gi|308165076|gb|AEHO01000029.1| GENE 9 8856 - 9776 465 306 aa, chain - ## HITS:1 COG:no KEGG:RBAM_034800 NR:ns ## KEGG: RBAM_034800 # Name: not_defined # Def: hypothetical protein # Organism: B.amyloliquefaciens # Pathway: not_defined # 14 303 14 310 319 139 31.0 1e-31 MNVFMLLSYYRKETMESIKLYKKSAKWLFDNLEYFDPRNESKIADNKYKIKAFMELLFVQ NMFYPQKLFSSSEQHIINNFIINLINNMSFYNYAVRDPDMISVLPTIIEFLLNQNQQVYN IEKIEQLIEYSHGLSIKKTAFRRLDLAYSFKKAGLKNKFDSLNAIYPLTTLGKNGNNFYY ADIDVYSITHTIFYMTDMGRKATPEISTLDNLNLLLRLIQLYILEDNMDILSELLICIKF LHYDLSKENIKFILDEAVAVLKKHQKQDGLMLGPGVSLSKRDTREQIFRLNYHTTMVSLG ALYLYE >gi|308165076|gb|AEHO01000029.1| GENE 10 9819 - 9980 145 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309807421|ref|ZP_07701384.1| ## NR: gi|309807421|ref|ZP_07701384.1| hypothetical protein HMPREF9211_0443 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9211_0443 [Lactobacillus iners LactinV 01V1-a] # 1 49 1 49 49 80 93.0 5e-14 MNDILKNNINVLSCLDDSKYIFIWENFIFTQPIDPIDNGHSLKKKKFSFKQII >gi|308165076|gb|AEHO01000029.1| GENE 11 10103 - 13270 3656 1055 aa, chain - ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1054 1 1058 1058 1325 62.0 0 MPKRKDIHKIMVIGSGPIIIGQAAEFDYSGTQACLALREEGYEVILVNSNPATIMTDTEI ADKVYLEPLTVEALTRIIYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKL KSIEQAEDREEFKKLCKQLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGG ICNNRKELATVVARGLDLSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPV GIHTGDSIVFSPSQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN PRVSRSSALASKATGYPIAKMAAKIAVGMTLDEIINPVTGTTYAEFEPALDYVVCKIPRW PFDKFAQADRKLGTQMKATGEVMAIGRTAEEALHKAIRSLDIDELDLFSPEAHNADDNLL EKKLAYAQDDRLFYLAEAIRRNYSMKDIHELTKINYYFLDIVAHLVEMEKAIQDHPQDIA TLREAKKYGFSDLTIAHLWNITENEVRQFRKQNHIIPVYKMVDTCAAEFESQTPYFYSTY DEENESTDFDSKSVIVLGSGPIRIGQGVEFDYATVHCVKALQKLGYKAIVINSNPETVST DFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGAQTAINLAAGLKEHGVKILGTDVED INRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDAAIKIGYPVLVRPSYVLGGKAMEIV YNEAELQEYLDNNAYITNDHPILVDDYLDGKECDVDAISDGVDILIPGIMEHVEHAGVHS GDSMAVYPPQSFSDDIQQKICEVTRKLAIALKCQGIMNIQFIVRDNDVYVIEVNPRASRT VPFLSKITGIEMVQVATKIIMGKSLAEQGYKPGLATASQMINVKAPVFSFNKLPGVDPYL GPEMKSTGEVMGSDYTYAKALYKAFAGAKINLTANMSILLATDLKEKDRILAIAKKFNQT GARVFVLPEVAEVLQDMGVRFNLVESEETLMQMLKEKKFNLVINNMSRDSEPKSFGFKLR QMAISQNISLITALDTVDAILIAISNDTLTTKPLA >gi|308165076|gb|AEHO01000029.1| GENE 12 13263 - 14345 1028 360 aa, chain - ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 2 352 4 353 360 448 58.0 1e-126 MRYLILEDGTFYAGEGFGANIETIGEVVFTTGMTGYQEAISDQSYANQILVFTNPLIGNY GITLSDYESLAPQIKGVICHQLARKPDNWRMQDTLPNFLKHINVPAISGIDTRQLVKKIR MHGTLRGAICDSIDHLDEVVEKLKNSNVTANIISQVSTKNSYPIPGSKRNIVVVDFGIKH SILKELTKRGCNCIVKPYNVSAAEIMNLNPDGVLLSNGPGDPEEMTDAAKMVREIEKHYP LMGICMGHQIFALANGAKTYKMKFGHRGFNHPVKEIATGNIAFTSQNHGYAVDPESVDKE NLFVTHVEINDGTVEGLRHKKYDAFSVQFHPDATPGPHDAVSLFDDFIQLIDQRKERNNA >gi|308165076|gb|AEHO01000029.1| GENE 13 14345 - 15622 1508 425 aa, chain - ## HITS:1 COG:BH2538 KEGG:ns NR:ns ## COG: BH2538 COG0044 # Protein_GI_number: 15615101 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Bacillus halodurans # 1 425 1 427 428 412 50.0 1e-115 MSWLIKGGLVFYNDILSLTDILISEGKIAAIGHNLTADHEIDATGLLVTPGLVDLHVHYR DPGLTYKETITTGSKAAAHGGFTTVGAMPNVKPVPNTATLLSKMVVENHEKGVVHILQYA PLTKDENSDEILDYQALKEAGAFALSNDGFGVQNAETMYKAMQKAAVNNLIVAAHAQDDS LFNKGVINEGDKAKKFNLPAISELAETTQIARDLLLAAKTGVHYHVCHVSTKTSLDLIRI AKKRGINVTCEAAPHHILLSQDDILTDDPYYKMNPPLRSKDDQMALIEGLLDGTVDFIAT DHAPHAAYEKEGSMLNAAFGITGSETCFSMLYTKLVKTGIVRLEQLLTWLTVRPADLFNL KHCGRLVVGEPADIAIFDLNQPHQLQILEYQSKGKNTPFTGNMVYGTTAYTIVDGNIVYQ RKEVA >gi|308165076|gb|AEHO01000029.1| GENE 14 15622 - 16563 915 313 aa, chain - ## HITS:1 COG:SPy0832 KEGG:ns NR:ns ## COG: SPy0832 COG0540 # Protein_GI_number: 15674868 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pyogenes M1 GAS # 4 307 8 307 311 337 52.0 2e-92 MQPVKLSHFTTVEDLTTEQVFNLIKRAEEFKNGAKPTPLTKPVYVTNMFFENSSRTHTSF EMAERKLGLTVIPFDPAHSSVKKGETLYDTSLIMNAIGIDLEVIRHSKNRYYDSLINLSE HQHLDMGIINAGDGSGQHPSQCMLDMMTIYEHFKHFDNLKVVIVGDIVNSRVARSDMEIL KKLGAEIYFSGPSCWYDHQFDQYGKYLPLDSLLEKMDVVMLLRVQHERHMEEDKDFSATD YHQKYGIDQKRYECLKENAMIMHPGPINHDVELAGNLVEATKCYFFRQMQNGVFMRMAMI EAVMYGRKLGGLA >gi|308165076|gb|AEHO01000029.1| GENE 15 16702 - 16968 331 88 aa, chain - ## HITS:1 COG:DR1110 KEGG:ns NR:ns ## COG: DR1110 COG2065 # Protein_GI_number: 15806130 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Deinococcus radiodurans # 2 83 95 176 183 109 69.0 1e-24 MLNKKNVILIDDVLYTGRTIRAAMDALIHMGRPNSISLAVLVDRGHRELPIRADYVGKNI PTALNEKVSVNVEEIDNKDSIELEKLES >gi|308165076|gb|AEHO01000029.1| GENE 16 16958 - 17245 403 95 aa, chain - ## HITS:1 COG:lin1954 KEGG:ns NR:ns ## COG: lin1954 COG2065 # Protein_GI_number: 16801020 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Listeria innocua # 5 73 7 75 183 97 71.0 6e-21 MIKELFDKIAIKRALTRISYEIIEKNKGTENLVLFGIKTRGVYLAKRIAKRIEELEGVKI PVGVLDITLYRDDRQDVSLSNEAVVNSTECNTDVK >gi|308165076|gb|AEHO01000029.1| GENE 17 17291 - 18211 1216 306 aa, chain - ## HITS:1 COG:BH2534 KEGG:ns NR:ns ## COG: BH2534 COG0167 # Protein_GI_number: 15615097 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Bacillus halodurans # 1 302 1 299 305 310 52.0 3e-84 MSKLNVKLPGLNLKNPIMPASGTFGFGDVPQAKKYDLNEMGAMVFKTTTLHARIGNPQPQ IAVMKNGVLNSVGLTNPGVDKVISDKIAPFKEQYPQLPLIASVGGSQISDYITISKKLSD SGLLNALEINVSCPNVAAGGMHLGTDPVVVEKLTSEIKKVVNIPVYIKLTPNVTNIVEIA QAAERGGADGLSMINTLLGLGIDIKTHKATLGNGFGGWSGSAIKPVAVRMVAQVHQAVKL PIIGMGGIETAEDIVEFMLAGASAVAVGTAHFKDGLAIPHLVADLETLLNELKVDDINEL IGQYKF >gi|308165076|gb|AEHO01000029.1| GENE 18 18217 - 19491 1344 424 aa, chain - ## HITS:1 COG:SPy1340 KEGG:ns NR:ns ## COG: SPy1340 COG0477 # Protein_GI_number: 15675278 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 15 414 1 398 406 313 46.0 3e-85 MTVSIHFWRLNMNNISKYTQELTRDQKLVISSTASGFALENMDVLFLSFAMSSMIKDLHL SGGAAGLISSITTLGMLLGGIIFGILGDKIGRVKTFSHTVVIFAIATGLMAFTNDINHIY MLRFLAGIGAGGEYGVGIALIAENFSHDRIGKMTSIAAIGGQIGAVMAAVVAAVIIPTLG WHKLFLVGVLPVVLTYFIRKHLHESKQFIEAKKHAKGSFFFEVIKKMFSTPRLMWQSIGL TIMMIVQISGYFGLMNWLPTIVQKQMHLSVSGSSLWMVSTIIGMSIGMMTFGTIFDYFGP RRAFTIFLLGSGVMVYMLILAHNMFALIIIGAIVGFFSNGMFGGYGAVISCLYPTEIRST ANNIIVNVGRAIGGFSSVVIGILMDYYNLMVVMGFLSALYLLSFIIMISLPGLKELGLKK VKKA >gi|308165076|gb|AEHO01000029.1| GENE 19 19706 - 20413 988 235 aa, chain + ## HITS:1 COG:L181692 KEGG:ns NR:ns ## COG: L181692 COG0284 # Protein_GI_number: 15673327 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Lactococcus lactis # 2 235 4 236 237 211 47.0 8e-55 MNKPVIVALDVEDKTSLDRLLNKLGDPKDITVKIGMELFYQFGTEPVKELVAKGYSIFLD LKLHDIPNTVYNGMKQIAKLGIQYTTIHALGGSEMIKKAHEGLIAGTPKGKSLPKLLAVT ELTSISDDSLANEQNCKLTMKDQVISLAKMAKKYGADGVICSPLEVEKLRAEVGEDFLYV TPGIRPATDQKFDQSRIATPAQAKAFGSSAIVVGRPITLAKDPQAAYQKIVKEFN >gi|308165076|gb|AEHO01000029.1| GENE 20 20415 - 21050 765 211 aa, chain + ## HITS:1 COG:L80411 KEGG:ns NR:ns ## COG: L80411 COG0461 # Protein_GI_number: 15673050 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Lactococcus lactis # 3 206 4 207 209 207 50.0 1e-53 MYTKEIIQSLIQNKIVTISPDKPFTYASGMLSPIYTDFRLTISYPKLWNMICDDLATLIK EKYPQVTVIGGVATAGIPHAAIVAQKLGLPMIYVRPKPKDHGKGRQIEGLFTAQDKIVLI DDLITTGGSVINAVKAAQKSGADVIGVSSIFTYYLPDAKENFAKINIPFAPLLSYPELLK QEKETGHVTDKEYMLLKNWHDDPWAWGKQFN >gi|308165076|gb|AEHO01000029.1| GENE 21 21144 - 21794 483 216 aa, chain + ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 3 180 6 185 224 126 38.0 3e-29 MKTIYLVRHGQTFINRYDKMQGWCDTPLTNQGIKEAENTGVVLKDIPFDIAFSSDLKRAC DTCDYIISENCNRHELQHISSPFFREQFYGYFEGMNSDEAYRMIGGPHGYPTREKLLSAI DLDTVKDYMKEADPYHDAESASEYWQRLNQGFSLLNQLDDVKNILLVTHGFTIRSIVNRF AKGKYNLLHGPQNGSITIMKINDKEIKITDYNKLEL >gi|308165076|gb|AEHO01000029.1| GENE 22 21906 - 23111 530 401 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 13 384 44 413 425 208 36 3e-53 MDELAKLAEANQMEVVGRSWQNLETIVTGTYFGLGKINEIKHLAKELHATVIIINDELTP TQIRNLEKMTKLSILDRTELILEIFSNRVRTKQAKLQVQLARLQYELPRLHPSENRLDQQ RGSGGGFNNRGAGETKLELNRRTIQQQISNIKKDLKKINQQEIIKATQRNNSFLPQVALV GYTNSGKSTTLNNLLNEYSKSADKKQVFTKDMLFATLDTHVRRIDLDNKLSFIISDTVGF VSNLPHNLIESFKATLQEVRDADLIINVVDASDPNILQMIQTTTKVLDELQIGDVPIITA FNKVDKTDRSYPQIEGNGNILYSAKDPESIRLLAKLIQKKIFSNLQVVELFLPLQMGDKL NYLHTHGQVIEEKYQDNGIYIKIKICKKIADKFAKYNYKSK >gi|308165076|gb|AEHO01000029.1| GENE 23 23229 - 23942 494 237 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312870708|ref|ZP_07730815.1| ## NR: gi|312870708|ref|ZP_07730815.1| putative membrane protein [Lactobacillus iners LEAF 3008A-a] putative membrane protein [Lactobacillus iners LEAF 3008A-a] # 1 237 15 251 251 370 97.0 1e-101 MFLFPIVVELGILIYENVVKKEKANISMYNGLWYVATVAIIVFVTVYQIIKNYYLGHDSL WQIFPYSKEGLEFIDIFFYILGTIIYGCTYQYAQATASNQKFYISMYIPEKLVSLIAFYL LIMAMCVLFKNVQCPKIGEGCIIISSLIIIISQISIFWKLNQKVVNHFLLGVSDACETKH LIYINTLPYVFFGVTKRQIATLINTSYLLNGCLIILCLLFILISIKFRRMNYIDLVG >gi|308165076|gb|AEHO01000029.1| GENE 24 23980 - 24639 648 219 aa, chain - ## HITS:1 COG:SPy1286 KEGG:ns NR:ns ## COG: SPy1286 COG1131 # Protein_GI_number: 15675239 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 3 198 7 211 232 141 39.0 1e-33 MLLKNITVKYGRKVALDNISLTLRNDGKIVGILGDNGSGKTTLVNLILKNINKFKGQREI EGSFSYMPDRYFLYESMTIKESIDLFKSVYSDFDEQRMYKILQKFSISPQLKLHDCSKGM HEQVHLALVFSRNTDFYVLDEPLSATDPIKRRYFMDIIQNYRRKNSTVLMVTHLIRDLGD MLEDVIFIKDGHILSHNSRAEILAVDKTLEDAYIRRIGQ >gi|308165076|gb|AEHO01000029.1| GENE 25 24989 - 26272 1266 427 aa, chain - ## HITS:1 COG:SPy0036 KEGG:ns NR:ns ## COG: SPy0036 COG0015 # Protein_GI_number: 15674278 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Streptococcus pyogenes M1 GAS # 1 426 1 426 430 583 68.0 1e-166 MLDRYTRPEMGKIWTDENRYAAWLKVEIAATNAWSELGEVPVADAQKIAKKASFTAERVA EIEAITHHDVVAFTRAVSESLGEERKWVHFGLTSTDVVDTAQGVLLKEANDILRSDLAHL KNTIAKKALKYKDTVMMGRTHGVHAEPTTFGLKLGRWYAEIIRDIDRFEHAAAGVESGKI SGAVGTFANVPPEVETSVLHQLGLNQQPITSQVLPRDLHAEYLAMLALIATSIENWATEI RSLQRSEIHEVEEHFRAGQKGSSAMPHKRNPIGSENLCGMARVIRGHMLTAYENVSLWHE RDISHSSAERIILPDTTIAIDYMLNRFDKILENLDVFPETMLKNMDRTYGLIYSQRLLLK LIDEAGLSREKAYDMVQKLTARSWNEQIQFRQLVDESEITKYLSKSDIDDAFDYHYHLKH VDDIFKN >gi|308165076|gb|AEHO01000029.1| GENE 26 26276 - 27565 1719 429 aa, chain - ## HITS:1 COG:SP0019 KEGG:ns NR:ns ## COG: SP0019 COG0104 # Protein_GI_number: 15899967 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 427 1 427 428 602 67.0 1e-172 MTVVAVVGSQWGDEGKGKMTDYLSQSADMTVRSNGGNNAGHTIAFGGKTFKMRLIPSGIF EAKKETVIGNGVVINPEVLLDEIKYLEDNGINTDKLAISNRAHIVMPYDILQDVYQEEAK GANKVGTTKNGIGPTYMDKASRIGIRMCDLLEKDTFEEKLRFNLNEKNALFVNVYGKEAL KFEDIFEKYWKLGQELKKYVTDTSVIVNDAIDNDDKVLFEGAQGVMLDIDQGTYPFVTSS NTVTGGIATGIGIGPSKVDTVIGICKAYTTRVGAGPFPTELLDETGNYIRETGHEYGTVT GRPRRVGWFDSVALRHSKRVAGIDALSLNLLDVFSGLKTVKIAVAYELDGQKIDYYPASL KELERCKPIYEELPGWDEDITKVTKLEDLPENARHFLSRVSELVGVPLVTVSVGPDREQT IVLKNPWEM >gi|308165076|gb|AEHO01000029.1| GENE 27 27775 - 28749 741 324 aa, chain + ## HITS:1 COG:SA1172 KEGG:ns NR:ns ## COG: SA1172 COG0516 # Protein_GI_number: 15926918 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Staphylococcus aureus N315 # 1 324 1 324 325 497 71.0 1e-140 MEAFDYDDIQLVPNKCIIKSRKEADTSIKFGKRTFKLPVVPANMESVINEPLAVWLAEND YYYVMHRFQPEKRADFIKMMHDKGLFASISVGIKDEEYKFIDQLANEKLVPEYITIDVAH GHSDYVIKMIKYIKEKLPESFLTAGNIATPEAVRELENAGADATKVGIGPGRACITKLKT GFGTGGWQLAALRMCSKAARKPLIADGGIRHNGDIAKSVRFGASMVMIGSLFAGHLESPG NIITIDNKTYKQYWGSASAVQKGAYNNVEGKQLLVPYRGSIKDTLKEMQEDLQSAISYAG GKDLHSIRVVDYVIVKSSIMNGDK >gi|308165076|gb|AEHO01000029.1| GENE 28 29147 - 29569 571 140 aa, chain + ## HITS:1 COG:XF2725 KEGG:ns NR:ns ## COG: XF2725 COG0610 # Protein_GI_number: 15839314 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 8 130 514 615 1007 72 35.0 2e-13 MVDTKDEDIDDEMVWDINREKAMMAPQSIKLVTKYILEHFDQKTYRGYKTYAYNTLMNVA KVASSDKGAVEEIKKKQRVSGFNSIFAVASVPMAKLYYQEFKKQMETDPTKKLRIATIYS YGANEAEYDEGSSGILDEEN >gi|308165076|gb|AEHO01000029.1| GENE 29 29708 - 30877 807 389 aa, chain + ## HITS:1 COG:XF2725 KEGG:ns NR:ns ## COG: XF2725 COG0610 # Protein_GI_number: 15839314 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 1 349 668 1006 1007 337 52.0 2e-92 MKNKELDLLIVVNMFLTGFDATTLNTLWVDKNLKMHGLIQAFSRTNRILNSIKTFGNIVC FRNLQKRVDTAISLFGDKNAGGIVLMKGFKDYYYGYEGIDGKQMPGYADMMEELKEKFPL SEPQIVGEQNQKDFISLFGAILRMRNLLSSFDEFVGKELITEYDMRDYLSRYQDLHDEWK RKREQGESTDIIDDIVFEVELIKQIEINIDYILMLVKKYHDTHCEDNEMLITITKAIDAS PELRSKKELIENFIAGINDVEDVMKEWHDYVAEKREEELVQIIKEENLKEPETRKFLENA FPDGEIKTAGTDIDKLMPPVSRFGGRNRAVKKQGVIDKLKLFFEKFFGVGGSFTTEKPKF FNYANAMAQQSVLMVAEDSATHVTKKDAE >gi|308165076|gb|AEHO01000029.1| GENE 30 31147 - 31407 276 86 aa, chain - ## HITS:1 COG:CAC1023 KEGG:ns NR:ns ## COG: CAC1023 COG0157 # Protein_GI_number: 15894310 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinate-nucleotide pyrophosphorylase # Organism: Clostridium acetobutylicum # 6 86 187 267 279 80 53.0 5e-16 MTYYKIKKYEVEVETLEMVKEAIHGQADIIMLDNMSHEAMAEALKWIDGRAIVEASGNFT LDNISEHKDLPFDYISSGEITHSGDV >gi|308165076|gb|AEHO01000029.1| GENE 31 31649 - 31915 348 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302190937|ref|ZP_07267191.1| ## NR: gi|302190937|ref|ZP_07267191.1| hypothetical protein LineA_02860 [Lactobacillus iners AB-1] # 1 88 1329 1416 1416 139 97.0 6e-32 MFNYQTENPDYTVPNGEAPLGIHQTSQQKQTTDNLSQLEANQRVKAASRKKVLPNTGSHS SQTWGGWILTLGGLITLLAGKKRKKEDE Prediction of potential genes in microbial genomes Time: Wed Jul 13 03:04:17 2011 Seq name: gi|308165046|gb|AEHO01000030.1| Lactobacillus iners LactinV 09V1-c contig00016, whole genome shotgun sequence Length of sequence - 33998 bp Number of predicted genes - 29, with homology - 29 Number of transcription units - 11, operones - 8 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 6 - 623 374 ## COG0344 Predicted membrane protein - Prom 651 - 710 6.5 + Prom 550 - 609 7.0 2 2 Op 1 24/0.000 + CDS 734 - 2677 2375 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 3 2 Op 2 . + CDS 2703 - 5198 2343 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 4 2 Op 3 . + CDS 5276 - 6211 1046 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase + Prom 6233 - 6292 5.0 5 3 Tu 1 . + CDS 6332 - 6928 703 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Term 6966 - 7020 4.1 6 4 Tu 1 . - CDS 7022 - 7996 781 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 8120 - 8179 6.0 + Prom 7952 - 8011 10.5 7 5 Op 1 . + CDS 8088 - 9413 1074 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP + Prom 9417 - 9476 5.5 8 5 Op 2 . + CDS 9581 - 9784 275 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP + Term 9805 - 9863 10.1 - Term 9793 - 9849 1.3 9 6 Op 1 24/0.000 - CDS 9852 - 13019 3045 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 10 6 Op 2 . - CDS 13026 - 14087 908 ## COG0505 Carbamoylphosphate synthase small subunit 11 6 Op 3 15/0.000 - CDS 14092 - 15027 334 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 12 6 Op 4 . - CDS 15035 - 15511 204 ## COG0597 Lipoprotein signal peptidase 13 6 Op 5 . - CDS 15512 - 17188 1594 ## COG2759 Formyltetrahydrofolate synthetase 14 6 Op 6 . - CDS 17188 - 17535 151 ## LDBND_0912 hypothetical protein 15 6 Op 7 3/0.333 - CDS 17614 - 18750 1089 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 18837 - 18896 5.3 - Term 19094 - 19130 -1.0 16 7 Op 1 6/0.000 - CDS 19222 - 19563 512 ## COG3599 Cell division initiation protein - Prom 19590 - 19649 6.2 17 7 Op 2 . - CDS 19686 - 20177 603 ## COG4474 Uncharacterized protein conserved in bacteria - Prom 20373 - 20432 5.3 + Prom 20146 - 20205 9.4 18 8 Op 1 7/0.000 + CDS 20250 - 20840 545 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 19 8 Op 2 . + CDS 20845 - 23151 2630 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 23170 - 23210 5.1 - Term 23156 - 23196 5.1 20 9 Op 1 6/0.000 - CDS 23202 - 23828 553 ## COG0177 Predicted EndoIII-related endonuclease 21 9 Op 2 4/0.167 - CDS 23854 - 24489 432 ## COG3935 Putative primosome component and related proteins - Term 24498 - 24531 4.0 22 10 Op 1 . - CDS 24550 - 25848 1545 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases 23 10 Op 2 . - CDS 25922 - 26362 275 ## LJ1201 hypothetical protein 24 10 Op 3 . - CDS 26423 - 28327 1673 ## COG1199 Rad3-related DNA helicases - Prom 28372 - 28431 3.4 - Term 28367 - 28402 -0.1 25 11 Op 1 . - CDS 28546 - 29223 555 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 26 11 Op 2 . - CDS 29247 - 31586 1553 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 27 11 Op 3 . - CDS 31580 - 32356 513 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 28 11 Op 4 8/0.000 - CDS 32430 - 32864 388 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 29 11 Op 5 . - CDS 32880 - 33899 714 ## COG3857 ATP-dependent nuclease, subunit B - Prom 33935 - 33994 2.1 Predicted protein(s) >gi|308165046|gb|AEHO01000030.1| GENE 1 6 - 623 374 205 aa, chain - ## HITS:1 COG:lin1323 KEGG:ns NR:ns ## COG: lin1323 COG0344 # Protein_GI_number: 16800391 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 8 194 6 192 198 132 47.0 3e-31 MSVFNSNIILFILAYLLGSFPSGLIVGLIFFKKDIRNFGSGNIGTTNTFRILGPKAGIAV LFADVFKGWLAVNLFKLCHIHVVNLVLLITGLLAILGHTFSIFLKFKGGKAVATIAGVLF AYNFNFTLVCATIFLPMIFITSCISLSALISIVIIFILSFLFHDIYLSILLGFLVLLVYI RHRSNIIRLINGKENIIPLWIILLV >gi|308165046|gb|AEHO01000030.1| GENE 2 734 - 2677 2375 647 aa, chain + ## HITS:1 COG:L0290 KEGG:ns NR:ns ## COG: L0290 COG0187 # Protein_GI_number: 15672961 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 6 640 6 641 644 865 68.0 0 MTNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGYGKE INVTIHPDNSVSVQDFGRGMPTGMHASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGVG SSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIFS TTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDGIKSFVSYLNEDKDTIG DIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRAFNDYAK KQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDNIIYEQ LSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTPAQSRNP EKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINTMIHTIG AGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYIALPPLYK LEKGQGKNVDIKYSWTDEELQKNVKEFGKGYSLQRFKGLGEMNADQLWETTMNPNTRTLI RVKIDDAALAERRVTTLMGDKVAARRKWIDENVKFKLGEDASILENQ >gi|308165046|gb|AEHO01000030.1| GENE 3 2703 - 5198 2343 831 aa, chain + ## HITS:1 COG:SP0855 KEGG:ns NR:ns ## COG: SP0855 COG0188 # Protein_GI_number: 15900740 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 10 806 4 807 823 818 53.0 0 MTNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNT FDKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPA AMRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGY ATEIPPHNLSEVLDVLIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRG RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKK SVVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNNYSFTEK QAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKKEF GSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSADNGLPSGD EVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFD INNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDS DNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLG IVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPHRIVAALIYTQNHDINIKTSSDRT IKIRTNDYPVGDRYSNGSFVVDTTSDGVPVALKLGMPLAEELGHDVSDLFD >gi|308165046|gb|AEHO01000030.1| GENE 4 5276 - 6211 1046 311 aa, chain + ## HITS:1 COG:SPy0380 KEGG:ns NR:ns ## COG: SPy0380 COG1227 # Protein_GI_number: 15674527 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pyogenes M1 GAS # 1 310 1 310 311 328 55.0 9e-90 MTKELIFGHQNPDTDAIGTAIAFSYLQNKLGYDTEAVALGNPNDETQYALDKFGFKAPRV VKTVKNEVDSVMLVDHNEPQQSVADIDQVNVSWVVDHHRIMNFNTANPLYYRAEPVGCTS TVVWKMYNENGVEIPANIAGIMLSAIISDTLLLKSPTTTQDDKNAVEFLAKVAGVDYQEY GLSLLKAGTNIASKTEKELINLDAKSFELNGHIVRIAQINTVDLPEAMERKAAFMKEMQN ASASDNYEMFMLVITNILDSNSEAIVVGTDECKLLFEKAFDKKLVDSSVALPGVVSRKKQ VVPPLTKAFAN >gi|308165046|gb|AEHO01000030.1| GENE 5 6332 - 6928 703 198 aa, chain + ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 7 195 3 193 194 224 61.0 1e-58 MSKENVFPQIAPEKEVGSVVRITTSYGDITIKLFEKEAPMTVENFLQLAKKDYYNNTIFH RVISDFMIQGGDPKGNGTGGTSIWGHSFEDEFSDVLFNIRGALSMANSGPNTNGSQFFIV QNKTMPKRYLKDMESAGYPNEIINAYKNGGTPWLDHRHTVFGQVIKGMDVVDKIAKAPRD RANDKPLEDIKIINIVEE >gi|308165046|gb|AEHO01000030.1| GENE 6 7022 - 7996 781 324 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 36 317 4 280 283 199 39.0 5e-51 MIFKLLQISFCGIIFTYIKIYAHRKIRSIKEFLVVKIAIVTDSTSDITVQEASDNNISIL PIPVIIDNHTYLDNIDISTKQLFDMQRNGSGFPQTSQPVLGDTMALFDKLHNSGYDAIIV ITLASTISGFFQTVNTISNEHPEYNIIPYDSGITVRLMGYLALTAARLAKKGSTPKEIID HLDALSSTIDEIFVVDDLKNLVRGGRLSNASAFVGSMLQIKPLLTFDDQSHKIVSFDKVR SMKRALKKTISLSEDKINQVNNNQDLRIMIYHSNDIQGAEYLFEYFKEAYPQNNIEIQEF DPVIATHLGEKALGVTWIKDIDKM >gi|308165046|gb|AEHO01000030.1| GENE 7 8088 - 9413 1074 441 aa, chain + ## HITS:1 COG:BS_yloA KEGG:ns NR:ns ## COG: BS_yloA COG1293 # Protein_GI_number: 16078628 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Bacillus subtilis # 1 427 3 435 572 270 37.0 4e-72 MPFDGLFIHSLLKTLTTNLKKARLSKIYQPFDNDLILIFRNQGINYKLLISINAQHPRMH ITTKNIINPDTASTFVMVLRKYLEGAILNEIKQVGMERIINLYFSNRNEFGDETNFVLSV ELMGRHSNVILYNKATNKIIDLLKRINPEDNRVRLLLPHADYQLPPLITGIDGSTITQSE FARLLAKYTTPLDMVNKFNGLDSDDKKELLGYFNNDFSFDALKLFMSNFDKPQGYVLQTV NHQNKFFCYRPRYLNLYVVLQSEDINKALDDFYQDMANREWVRQKAKAVENVVNNENKKL SRKLIKLQKQLDSAENSTEFRIKGEILNVYLSNIKPGITTISLPNYYDENKPINIKLDPA LSPAKNAQKYFVKYQKLRNSIKFIKEQIKLTQDNLAYFDTIQTAINNAEPQDIALIREEL INQGYIRQHNKNNNLRKKKLQ >gi|308165046|gb|AEHO01000030.1| GENE 8 9581 - 9784 275 67 aa, chain + ## HITS:1 COG:SPy1013 KEGG:ns NR:ns ## COG: SPy1013 COG1293 # Protein_GI_number: 15675016 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Streptococcus pyogenes M1 GAS # 6 62 489 545 550 72 63.0 3e-13 MSDIKEAAEIAAYFSKARYSANVVVDYITVKKIKKPKGAKPGFVIYTGQKSISVTPIKED ILCKRDN >gi|308165046|gb|AEHO01000030.1| GENE 9 9852 - 13019 3045 1055 aa, chain - ## HITS:1 COG:BH2536 KEGG:ns NR:ns ## COG: BH2536 COG0458 # Protein_GI_number: 15615099 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Bacillus halodurans # 6 1055 6 1058 1062 555 30.0 1e-157 MPLSREINKILILGAGANIVNKVSDFDILCHQAIQALCEDNVQIILINPNPATIQTDTCK NIHVFLEPLTTDFVKRIIRMEKPDAILTAFGGTPAIELVKKLQKDGIIQDMNIKLLTIND LCLKIKDAQFLYDFLSENQIPVADQWLLHSVSDLSNVLKNAQYPLLITKSVKYRTDKVCS VNNFGMVKDYFQQEAESTRFNLKNYRINEDLSSWEELIFDVIRDNTGNCCFINSMSSLEP VSVNSHDSILIAPILTHNNNQIQELRHCCSKIANLLNINGILTIHFAVKKEGDSFVYKVL SVKPRLTHTSLISYRINIYSVGYVIAKIAIGYNLNEIIDPQSGLNSAIEPINDAFAIKMP YWSFTELSSNYYELGNKSTSSGLALGIGRNFETALMKAIQSTTNIMQNKRIYFNTLNNAS DDEIINKLQHVDNHHLLMLIVAISKGISLSDIQLHTGINCIFLQKIAHIVNVGKKFKQNP EQVNNLIAAKKCGFSNKLLSMIANIDENLIDELLDKHNIKPSYIGIDGAAGLHAPKINAY YSGYEVENEIIPLSQQDKCLIIGLKSFQISQTGEFDYMIYHVAQTLKKHKMQTVIISNNP ESISNSYDLCDRVYFEPITLENILYICKKENIKYLITQFSGKQINQYRQRLLAHGLKLLG QDNLSDVLQQDRKQQIINANVNPVPALITTNRNEVLSFIETYKFPVLIGGFKNDKKQKSA VVFDKPALNRYIDENDLDKISISQFIEGNKYEITTISDGKNVTIPGIIEHFEQTGSHASD SIAVFRPQNLTSNKQRLIRDAVVNIAQQIHLRGPINLHILLANEQIYVLQIKTYAGHNVA FLSKSLQQDISAISTEVLLGKNLDELGLANDVWPSNNLIYIKMPVFSYLSYNSVNTFDSK MKTSGSVMGRANRLPFALYKGYEASNLTIPSYGTVFISVKDSDKKSAISVAARFHKLGFQ LLATEGTANILAEEGITTSIVEKLQTGNNSLLEKIAQHKINLVINVTNLSDSASHDAIMI KDQALNTHIPVFSSIQSAENILNVLETMAMCTQPL >gi|308165046|gb|AEHO01000030.1| GENE 10 13026 - 14087 908 353 aa, chain - ## HITS:1 COG:L43866 KEGG:ns NR:ns ## COG: L43866 COG0505 # Protein_GI_number: 15673583 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Lactococcus lactis # 3 353 4 353 357 235 38.0 1e-61 MARYLILEDGTAYKGTGFGSLTISTGELAIQTANFGYQEAISDPANFGKILAFTTPMIGG SGINAIDYESIVPSIKGIVVNDLAPQSYFEGIDTYQSLDNFLSEKKIPGIYGIDVRSLVH KIKEHKTIKASIMDTDDNHAFDQIKALVLPKNKTAQISTSNAYAAPNVGKTVAVIDLGIK HSLLRALSLRKINCVVLPYNASINDINNIRPDGIIISNGPGKVGELINYINPIFDYFYKK LPILTIGLGYLLLSNYLGLELFDIFPPYNGSNFPVIDQNTHKIWQTSINLNSLVMPVDTK LSFSNIYYDLNSDLIAGYSLLQDKAIGVAFNPEGSPGTFDAKKIFDDFTMMME >gi|308165046|gb|AEHO01000030.1| GENE 11 14092 - 15027 334 311 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 45 294 41 283 285 133 35 2e-30 MNDNISYNLVVKSEESGVRLDKYIATHISTISRTRVQELIKQKLITTNGLQTKLSYKVNT NDKINIEIPSPQPLSLDPENLNLDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNGLIY HTKNLAKCDEILRPGIVHRIDKDTSGLLMIAKNATARISLEKQLANKINKREYIAIVHAN FKHSSGVIDAPIGRNPYQRQQMAVVASGKKAITHFTVLEQFPGYSLVKCVLETGRTHQIR VHMSYIGHPIAGDPLYGPKKTLNGNGQFLHAKTLGFYHPKTNQWLEFSISEPQIFAKQLY LLRKKLTNNLV >gi|308165046|gb|AEHO01000030.1| GENE 12 15035 - 15511 204 158 aa, chain - ## HITS:1 COG:L0335 KEGG:ns NR:ns ## COG: L0335 COG0597 # Protein_GI_number: 15672979 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Lactococcus lactis # 13 157 7 148 150 100 39.0 1e-21 MKKYHIIDNCKYLIISILIIVCDQILKRYIIDNFKLGQSREIIPGLLSFTYLRNTGAAWN LLAGKMNLFYIISILALIVVIYYLFSLKYSHRIFKFGLAMVLGGIVGNFIDRLIFKYVID MFDLDFINFNIFNLADCAITFGVIFIFYYFVFLVEKEN >gi|308165046|gb|AEHO01000030.1| GENE 13 15512 - 17188 1594 558 aa, chain - ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 558 1 556 556 566 52.0 1e-161 MYSDIEISQKNKPIKITDIAHKLGLSGNDLDLYGNYKAKIHWDAIKKAKHNSKLGKLILV TSISPTPAGEGKTTISIGLGDAINNQLHKKTIIALREPSLGPVFGLKGGATGGGYAQVVP MEDINLHFTGDMHALTCAIDTLAALVDNYIYQNNECNLDPNSILLKRGIDVNDRTLRKIM IGQGSKFNGIERPASFAITVANELMAILCLSKDINDLKYRIGNILVGFSTTNKPIYVHDL GFEGSIAALLGDALKPNLVQTLEKTPTLIHGGPFANIAHGANSIIATNLALHLSDYVLTE AGFGADLGGQKFMDFVSDHLEKTPDAVVIVATVRALKYQHEKSTTNLANENIESLTAGFV NLKRHMHNMKRYNIPVIVLINKFDTDTDAELRTLQELIRAEGFESEIVNYHDLGSKGGIV AAQKVIDLADNNTKEIIKTYDPTDNIKAKIEKIAKNIYHATNVVYSEKAEKHLENIKKLG KDDLPPIMAKTQISFTDDKKQLGAPDNFTLHVKNVSLKNGAGFIVVYTGNIVDMPGLPKK PAALNIDIDNDGKISGLF >gi|308165046|gb|AEHO01000030.1| GENE 14 17188 - 17535 151 115 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0912 NR:ns ## KEGG: LDBND_0912 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 112 1 112 118 73 41.0 2e-12 MKKHFIFLGTNGLIYYSWLFIILFMSIIFQQETSKNISLACIVLGSIFIISLIYTLLFSY IECKNQTYFLKLPYLKKKRVFKPEFINRYLGLSFYKVNVANSNYFIVIVEKRSNA >gi|308165046|gb|AEHO01000030.1| GENE 15 17614 - 18750 1089 378 aa, chain - ## HITS:1 COG:SP0373 KEGG:ns NR:ns ## COG: SP0373 COG0116 # Protein_GI_number: 15900296 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Streptococcus pneumoniae TIGR4 # 2 354 3 359 385 342 47.0 6e-94 MKNYDLYATMGTGFEAVVAKELQNLGYNTTTENGRVFFKGNIEDIIKTNINLRTADRIKI LLKEFKALDFETLYDQTFNYDWAQLLPVDAKFPVSGRSVKSKLHSEPDIQSIVKKAIVDK MTQQYHRRGFLPETGNLYHLDIYINKDIARISLDTTGESLFKRGYRVEHGGAPLKENFAA GLLKLTPYNGTHPLIDPFTGSGTLAIEAALIARNIAPGLWRNFAFNNFDWVDNNLYKQEI ENAKSKISKNHAPIIASDIDQSILEIAKVNANNAGVLDDIRFKQVAIKDFATDLTNGIII ANPPYGQRLKDKTSARKIYQEMGNVLGNLSSFNQYYLTSDVEFEKYFGKVANKKENYSTE ILELTFINIGTLKNDKQK >gi|308165046|gb|AEHO01000030.1| GENE 16 19222 - 19563 512 113 aa, chain - ## HITS:1 COG:lin2002 KEGG:ns NR:ns ## COG: lin2002 COG3599 # Protein_GI_number: 16801068 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 1 101 1 106 113 58 35.0 4e-09 MTSKQNIQLSAEDILKKEFSTKLKGYDQEEVNSYLDIIISDYEHFNQIIDDQQKQISELQ EEIKNSELRDRQNPYENLIKTETTNVSMIQRISTLERKVYALEQRLNMNNQTY >gi|308165046|gb|AEHO01000030.1| GENE 17 19686 - 20177 603 163 aa, chain - ## HITS:1 COG:SPy1647 KEGG:ns NR:ns ## COG: SPy1647 COG4474 # Protein_GI_number: 15675519 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 148 1 144 171 106 43.0 2e-23 MHCIWISGYRSYELNVFNNNDPKIKVIKIAIKNYLQQKLEDRCLDWVIAGPNLGVEQWAL EVANDLRNFYSDLHTALIFPYTNFGNNWTPSKQEYLSNLRSNVDFYTELSSQNYQNPKQF IQFQEFMLKHTEGALLIYDLEHKGKTSYDYQAIQFYQTQKIIF >gi|308165046|gb|AEHO01000030.1| GENE 18 20250 - 20840 545 196 aa, chain + ## HITS:1 COG:BH1703 KEGG:ns NR:ns ## COG: BH1703 COG3331 # Protein_GI_number: 15614266 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Bacillus halodurans # 2 190 3 195 199 199 55.0 3e-51 MVNYPRGIFSSIEHSISHQNKIIFSDRGMTLEQQINESNEYYLNHNIAVIHKKPTPIQIV KVDYPRRSRAVIKEAYFRQASTTDYNGVYRGYYLDFEAKETKNRKSFPLKNFHEHQIIHL QKCLEQKGICFAIIRFVTLNRYFITPASYLIRMWYSNSKKSLSLIDIINNSYEIKSGYNP TLSYLDGVDKFIIDRI >gi|308165046|gb|AEHO01000030.1| GENE 19 20845 - 23151 2630 768 aa, chain + ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 35 651 18 642 719 468 44.0 1e-131 MSESKNSSERNTRSSKYHKNKKEKHLGWLVLKLILLFVVVIIVSGVGLFAYYAKDAPSIS KAQLQSGGTSSLYTTDGKFLLSLGSEKRIYVDDKHIPQKLKDAVISVEDKRFYSEGFGLD PVRIVGSVLVNARAKGVAAGGSTITQQLVKLSVFSTAMSQRTLKRKAQEAWLSMKVEREF SKKQILEFYINKVYMNYGNYGMGTAADFYYGKPLKDLNLAQTALIAGMPNAPISYDPYVY PKKAKYRRDIVLYSMLKNKKISSAQYNAAVKVPITEGLLSKKDKVNSNLRKVDDPYIKEV INEVKEKGFNPYNDNLKITININQHIQQKLYDLANNGEVPFTNDKMQIGATIIDPNNGHV VAILGGRKLPAVQLGLNRAVQTARSTGSTIKPVLDYAPAIEYLKWSTSHIINDSKYIYPG TKIQLYDWDNVYQGKMSIRRALEQSRNVPAVKTLKKVGLARASLFVRKIGINIPSDSGLS VGIGANASTLQMASAYAAFANNGRYYKPQFVSKIETPDGITRNYDSSSTKVMKESTAYMI TDMLKGVFTRGSGTMAKCDNIYEAGKTGTVKYSDEDLVKFPSYAHTPKDSWFIGYTKAYS IGIWTGYDNLKDGTISGIGENSAQLFYKKMMTYLMKNKPNSNWKKPSTVVRCRIVNGTER KVASKHSKNYTWQLFVKGHAPAPDDNDDDDVDNIDDSDDKVNTADEDADKDNDVKDDDNQ TDNNQGDGDKGKNSSSNSDNNNSNATDSSSTTTDNHSDSTSTSSSVNH >gi|308165046|gb|AEHO01000030.1| GENE 20 23202 - 23828 553 208 aa, chain - ## HITS:1 COG:SPy0929 KEGG:ns NR:ns ## COG: SPy0929 COG0177 # Protein_GI_number: 15674949 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Streptococcus pyogenes M1 GAS # 9 197 3 193 218 200 55.0 1e-51 MTSNNLVSISEARQILYKIISLFPDAKGELRWGTPFQLLCAVLMSAQTTDKMVNKVTPIL FKKFPDSKSLAAANISDVEACIKNIGLYRTKAKHLKTTATLIENKYQGIVPKNKKALLTL PGVGIKTANVVLAEAFGVPSIAVDTHVMRIAKQFKIVPNNADPSQIETILENIMPQKDWI KLHHAMIAFGRYKMPAKYRNENPYDFLK >gi|308165046|gb|AEHO01000030.1| GENE 21 23854 - 24489 432 211 aa, chain - ## HITS:1 COG:BH1697 KEGG:ns NR:ns ## COG: BH1697 COG3935 # Protein_GI_number: 15614260 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus halodurans # 4 211 6 206 233 127 33.0 2e-29 MVSFAKYQKLGFTTVSNALLLYYHKLNINEVELALLLHLESFNQKNNRFPSDEMIANRMN FNAIQVSQLIQQLIDKKLIELKQQRDENKRITNYYDLSMLYEKLDTIVDKATYDQTIDSV QLDYQTTDSPLQNIIRQFEIEFGRLLSPIEKQQISSWLVIDHYKPEIINLALRESVLSQV YNFKYIDRILLNWQRHNLTDIKQVKAFLTRY >gi|308165046|gb|AEHO01000030.1| GENE 22 24550 - 25848 1545 432 aa, chain - ## HITS:1 COG:BH1696 KEGG:ns NR:ns ## COG: BH1696 COG0017 # Protein_GI_number: 15614259 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Bacillus halodurans # 6 432 4 430 430 529 58.0 1e-150 MTKLISIKDAPKYVDQEVKMHVWLTDKRSSGKIMFLQFRDGTAFFQAVLLKKNVSEELFE QAKNLRQEASLYVTGTINKDERSHFGYELQISDFQVVTNNDGYPIGNKEHGIDFLLDHRH LWLRSKRPFAIMKIRNVAFKAIVDYFEDNGFIKFDAPILMHSAPEGTTELFHIEYFNSDA YLSQSGQLYGEVGAHAFGKIFTFGPTFRAEESKTRRHLTEFWMMEPEMAWMHQDESLEIQ EGLLKFVTKRILDNCEYELSILGRDHEKLRPTTEGNFARLSYDEAVKMLQDAGRDFKWGD DFGAPDEAFISEQYDRPVFILNYPTAIKPFYMKKNPENPLEYLCADVLAPEGYGEIIGGS EREEDYDTLKAQIEEAGLDLKDYEWYLDLRKYGSVPHSGFGIGFERFLGWICKLDHIREA IPFPRLINRLEP >gi|308165046|gb|AEHO01000030.1| GENE 23 25922 - 26362 275 146 aa, chain - ## HITS:1 COG:no KEGG:LJ1201 NR:ns ## KEGG: LJ1201 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 4 146 22 164 164 135 45.0 4e-31 MLLISLITCLFFFISGHSKRKAAQNAIKIALNKTPITKIDEVYHLSRDITSDSVSGRDKH NHRYYFVYIPSKKKAYYYSAKEGMNKAKISSLFEYLHPNQNTYKINFGWYKDLPVWEISY KKNNGNYGYAIYSFKTGKEIFFVDNI >gi|308165046|gb|AEHO01000030.1| GENE 24 26423 - 28327 1673 634 aa, chain - ## HITS:1 COG:lin2013_2 KEGG:ns NR:ns ## COG: lin2013_2 COG1199 # Protein_GI_number: 16801079 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 13 615 50 645 668 201 27.0 5e-51 MAFAYNLYSSRKLVIAVPTKILQRQLISQEIKQLLKITNLDLNAEEVKSSRHYLDLDGFF NSIYQTSSDRQTLILQMSILVWLTNTETGDLDELQLTNYDAQIFKQITHPGDARVGTTFS DYDFWNLVRSKQEQADILVTNHAYLANNYSDSIWGQNPFLVIDEAHRFIDNFNNSRSNSL QFESFWGACTHLQNILFYDKNCIDNRFSNDSRYNIYLENLKYAIVDLIHQINQIQTELFA RIAYSQSRVDKGNNRVDVIFNGSELFSDVATFKQLFNLLQNKIEVVRKNTNEILFLLYEQ ENNIVNTDEANILELQESIDRFDYYSEQIYILLDQLNTKLSLEEEGYVLQISNINDPLTT NINWLMVNSVSEISLLYSYFTKKLFISATMSQNNNFDYIKQDLFLANDTNSYLAKNTFDF SKRLNIIGLKDSQVASDPNSAEFTDFIAKFITHSVQKMDHILVLFTNLDTIKEVFLQIQT ANELKDFEILAQGLTGSNERLAKRFSIAKRSILLGANSFWEGIDFKNCNINLVVVTKLPF ESPDQADIKLREQKLRNIMTPSQIFENSTLPRAIIRFKQGCGRLIRNEYDKGTLVILDQR LWLKNYGIKFVENVPVTVEYKTFKDLQKALSKDK >gi|308165046|gb|AEHO01000030.1| GENE 25 28546 - 29223 555 225 aa, chain - ## HITS:1 COG:BS_dinG_1 KEGG:ns NR:ns ## COG: BS_dinG_1 COG0847 # Protein_GI_number: 16079297 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Bacillus subtilis # 11 214 6 209 220 162 41.0 6e-40 MVSRAFEHDVFAVVDLETTGTQIKQHDRIIQFGCAIIKDRKITKTYSFLINPEKTIPRAV ENLTGISNQEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGK AIDTVELAQIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEMLPT ATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLIQIKIS >gi|308165046|gb|AEHO01000030.1| GENE 26 29247 - 31586 1553 779 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 1 764 435 1218 1232 385 32.0 1e-106 MVGDVKQSIYGFRQAQPHLFLQKYHQFSNEVQSERIILSDNFRSSKNVTQIVNNIFDALL TENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEVNDLDEINLV ITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSENLKLFQAFANAKLPLFVSDIQ NYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEPEFAKIRIASRSTSFYDAII NYIQTSDDELSIKCNNFINELSHFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRR VNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSK GLEFPIVFLIGLNHKYQQADTTNNYVITTKSGLGLTITTADYRIDSLVKSYCNFEKKLQN LEEEIRILYVGLTRAKQKLIMVSTMANENIIPDFQNKLDAHNQLPFIDKSNAISPMSFLG PELFANQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQASVKISNQSRSDLSDKLLATVKT LYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNSKLINSANKYLMPISDQPAFLKK ANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLIENLVLQNKLNPDIIPHLSKHDINWFV TSNFAKAFWEKSDNLYREIEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILF DYKTDFVDRSNLELAINNLKKKYAGQLSLYASALNNLSDKKVKAKYLILLSINKIVKVD >gi|308165046|gb|AEHO01000030.1| GENE 27 31580 - 32356 513 258 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 1 248 180 423 1232 84 23.0 2e-16 MLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLWQEKIKPLLLTNLQNIINKI SQYITKAEHNFSDLNKLIEQLNLFMKSLNYLLAGIEQNLNYDEIRSRFSNCNFVGRLRRS SNWDESSTNLYQEISEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT FINEFGKLKRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNEL QEQIIQVIKEKVKTIYLW >gi|308165046|gb|AEHO01000030.1| GENE 28 32430 - 32864 388 144 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 2 137 9 146 1232 120 44.0 7e-28 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA SEMKLRIKNAIKNKIKEQPDNLFLKQQLAKVDIANISTIDSFCLEVIRKFYYVINLDPNF SIMTDDTQLSLLKEKALLNTENIF >gi|308165046|gb|AEHO01000030.1| GENE 29 32880 - 33899 714 339 aa, chain - ## HITS:1 COG:CAC2263 KEGG:ns NR:ns ## COG: CAC2263 COG3857 # Protein_GI_number: 15895531 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Clostridium acetobutylicum # 1 332 819 1135 1153 94 23.0 3e-19 MDRLVKYLKQHKLDFAELTKDKISVILANIQDELKTKGSYRELLGDPFNEFLFKCLDRTT KKVVNYWHQNMFQTKFCPLYSELSFGNKEYIAGLSYQFIDKQQKTHHISLRGKIDRVDLL KDCDNEILQLIDYKSSAKKFDFNLFKNGISMQMLSYLSVLQDNSHIFSTNPVNIFGAFYQ TMTQKVEHLNNKANISSSFVTKRTPDESVNKLKYNGLFILDDDLNISQIDANLDTPSTYS KLYSNLRINKDNNLISANGISRNDFSLLERYNKLLIINGAKSILNGDIKLNPYKYADTTP LTFSDYNDIYFFDDMLPENNYHHILKADKKQLSVRSLMR Prediction of potential genes in microbial genomes Time: Wed Jul 13 03:04:40 2011 Seq name: gi|308164998|gb|AEHO01000031.1| Lactobacillus iners LactinV 09V1-c contig00009, whole genome shotgun sequence Length of sequence - 48653 bp Number of predicted genes - 48, with homology - 48 Number of transcription units - 17, operones - 9 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 689 429 ## COG0480 Translation elongation factors (GTPases) - Prom 913 - 972 6.4 - Term 1012 - 1056 -0.7 2 2 Op 1 . - CDS 1066 - 1980 829 ## SPCG_0169 hypothetical protein 3 2 Op 2 . - CDS 1998 - 2999 1080 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 4 2 Op 3 . - CDS 2996 - 5107 1051 ## SPSINT_2115 hypothetical membrane protein 5 2 Op 4 . - CDS 5176 - 7623 1063 ## SPCG_0166 hypothetical protein 6 2 Op 5 . - CDS 7607 - 7837 124 ## SPH_1415 conjugative transposon membrane protein - Prom 7919 - 7978 4.0 - Term 8049 - 8086 3.1 7 3 Tu 1 . - CDS 8088 - 8585 379 ## SPG_1237 Tn5251 hypothetical protein 8 4 Op 1 . - CDS 8702 - 8923 288 ## SPG_1238 Tn5251 hypothetical protein 9 4 Op 2 1/0.000 - CDS 8920 - 10113 916 ## COG2946 Putative phage replication protein RstA - Prom 10151 - 10210 2.0 - Term 10208 - 10254 1.7 10 4 Op 3 . - CDS 10348 - 11733 890 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 11 4 Op 4 . - CDS 11780 - 12145 364 ## SPSINT_2122 hypothetical protein 12 4 Op 5 . - CDS 12164 - 12478 266 ## SPH_1425 conjugative transposon protein - Prom 12612 - 12671 5.6 - Term 12595 - 12637 6.3 13 5 Op 1 . - CDS 12836 - 14029 1127 ## COG0772 Bacterial cell division membrane protein 14 5 Op 2 . - CDS 14046 - 14273 268 ## LGAS_1233 hypothetical protein 15 5 Op 3 . - CDS 14287 - 14601 281 ## COG0759 Uncharacterized conserved protein 16 5 Op 4 . - CDS 14649 - 15638 1054 ## COG1077 Actin-like ATPase involved in cell morphogenesis 17 5 Op 5 . - CDS 15704 - 15937 287 ## LJ0942 hypothetical protein - Term 15948 - 15977 0.5 18 5 Op 6 42/0.000 - CDS 15986 - 16420 576 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 19 5 Op 7 42/0.000 - CDS 16432 - 17901 1810 ## COG0055 F0F1-type ATP synthase, beta subunit 20 5 Op 8 42/0.000 - CDS 17898 - 18851 1059 ## COG0224 F0F1-type ATP synthase, gamma subunit 21 5 Op 9 41/0.000 - CDS 18869 - 20380 1746 ## COG0056 F0F1-type ATP synthase, alpha subunit 22 5 Op 10 38/0.000 - CDS 20370 - 20939 382 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 23 5 Op 11 37/0.000 - CDS 20939 - 21439 698 ## COG0711 F0F1-type ATP synthase, subunit b 24 5 Op 12 40/0.000 - CDS 21484 - 21696 328 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 25 5 Op 13 . - CDS 21715 - 22431 446 ## COG0356 F0F1-type ATP synthase, subunit a - Prom 22464 - 22523 4.8 26 5 Op 14 . - CDS 22526 - 23155 857 ## COG0035 Uracil phosphoribosyltransferase - Prom 23183 - 23242 9.3 - Term 23224 - 23252 -0.1 27 6 Op 1 10/0.000 - CDS 23253 - 24269 1017 ## COG0009 Putative translation factor (SUA5) 28 6 Op 2 32/0.000 - CDS 24253 - 25092 331 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 29 6 Op 3 3/0.000 - CDS 25085 - 26173 1418 ## COG0216 Protein chain release factor A 30 6 Op 4 . - CDS 26206 - 26799 688 ## COG1435 Thymidine kinase - Prom 26829 - 26888 10.7 + Prom 26782 - 26841 15.3 31 7 Tu 1 . + CDS 26929 - 28281 1306 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase + Term 28289 - 28333 5.3 - Term 28048 - 28095 4.3 32 8 Tu 1 . - CDS 28284 - 29297 925 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 29516 - 29575 75.5 + TRNA 29424 - 29495 60.3 # Glu CTC 0 0 + TRNA 29500 - 29572 61.2 # Gln CTG 0 0 33 9 Op 1 9/0.000 - CDS 29636 - 30865 848 ## COG1668 ABC-type Na+ efflux pump, permease component 34 9 Op 2 . - CDS 30862 - 31755 1055 ## COG4152 ABC-type uncharacterized transport system, ATPase component - Prom 31775 - 31834 9.2 35 9 Op 3 . - CDS 31847 - 33187 1492 ## COG0166 Glucose-6-phosphate isomerase - Prom 33250 - 33309 8.9 + Prom 33335 - 33394 8.9 36 10 Tu 1 . + CDS 33490 - 35589 1393 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Term 35559 - 35593 1.3 37 11 Op 1 . - CDS 35705 - 36418 468 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 38 11 Op 2 . - CDS 36420 - 36809 408 ## FI9785_1291 hypothetical protein 39 11 Op 3 . - CDS 36821 - 37618 615 ## COG1482 Phosphomannose isomerase - Prom 37688 - 37747 3.7 40 12 Tu 1 . - CDS 37816 - 39207 909 ## gi|309805664|ref|ZP_07699705.1| hypothetical protein HMPREF9213_0583 - Prom 39244 - 39303 8.3 - Term 39252 - 39300 7.0 41 13 Op 1 36/0.000 - CDS 39339 - 41306 1285 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 42 13 Op 2 4/0.000 - CDS 41306 - 42061 274 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 42100 - 42159 11.1 43 14 Op 1 40/0.000 - CDS 42161 - 43078 496 ## COG0642 Signal transduction histidine kinase 44 14 Op 2 . - CDS 43083 - 43751 575 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 43789 - 43848 6.5 - Term 43774 - 43820 9.0 45 15 Op 1 . - CDS 43851 - 44918 1045 ## COG1653 ABC-type sugar transport system, periplasmic component 46 15 Op 2 . - CDS 44795 - 45142 201 ## FI9785_470 hypothetical protein - Prom 45275 - 45334 8.4 - TRNA 45340 - 45412 81.0 # Thr CGT 0 0 - Term 45484 - 45534 8.5 47 16 Tu 1 . - CDS 45626 - 48310 3682 ## HMPREF0424_0004 triacylglycerol lipase - Prom 48356 - 48415 6.6 - Term 48414 - 48457 8.7 48 17 Tu 1 . - CDS 48483 - 48653 59 ## gi|309808127|ref|ZP_07702040.1| LPXTG-motif cell wall anchor domain protein Predicted protein(s) >gi|308164998|gb|AEHO01000031.1| GENE 1 2 - 689 429 229 aa, chain - ## HITS:1 COG:CAC1448 KEGG:ns NR:ns ## COG: CAC1448 COG0480 # Protein_GI_number: 15894727 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 2 227 3 235 652 213 47.0 3e-55 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE GNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDN >gi|308164998|gb|AEHO01000031.1| GENE 2 1066 - 1980 829 304 aa, chain - ## HITS:1 COG:no KEGG:SPCG_0169 NR:ns ## KEGG: SPCG_0169 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 1 304 8 311 311 558 100.0 1e-157 MKFRKNQNKEKQIPKEKKPRVYYKVNPHKKVVIALWVLLGLSFSFAIFKHFTAIDTHTIH ETTIIEKEYVDTHHVENFVENFAKVYYSWEQSDKSIDNRMESLKGYLTDELQALNVDTVR KDIPVSSSVRGFQIWTVEPTGDNEFNVTYSVDQLITEGENTKTVHSAYIVSVYVDGSGNM VLVKNPTITNIPKKSSYKPKAIESEGTVDSITTNEINEFLTTFFKLYPTATASELSYYVN DGILKPIGKEYIFQELVNPIHNRKDNQVTVSLTVEYIDQQTKATQVSQFDLVLEKNGSNW KIIE >gi|308164998|gb|AEHO01000031.1| GENE 3 1998 - 2999 1080 333 aa, chain - ## HITS:1 COG:BS_yddH_2 KEGG:ns NR:ns ## COG: BS_yddH_2 COG0791 # Protein_GI_number: 16077564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 210 332 2 124 124 144 59.0 2e-34 MKLKTLVIGGSGLFLMVFSLLLFVAILFSDEQDSGISNIHYGGVNVSAEVLAHKPMVEKY AKEYGVEEYVNILLAIIQVESGGTAEDVMQSSESLGLPPNSLSTEESIKQGVKYFSELLA SSERLSVDLESVIQSYNYGGGFLGYVANRGNKYTFELAQSFSKEYSGGEKVSYPNPIAIP INGGWRYNYGNMFYVQLVTQYLVTTEFDDDTVQAIMDEALKYEGWRYVYGGASPTTSFDC SGLTQWTYGKAGINLPRTAQQQYDVTQHIPLSEAQAGDLVFFHSTYNAGSYITHVGIYLG NNRMFHAGDPIGYADLTSPYWQQHLVGAGRIKQ >gi|308164998|gb|AEHO01000031.1| GENE 4 2996 - 5107 1051 703 aa, chain - ## HITS:1 COG:no KEGG:SPSINT_2115 NR:ns ## KEGG: SPSINT_2115 # Name: not_defined # Def: hypothetical membrane protein # Organism: S.pseudintermedius # Pathway: not_defined # 1 703 23 725 725 1290 99.0 0 MTVAFTLVIAIFLLAMLGTVVQAAGLVDDTVNVANEYSRYPLENYQLDFYVDNSWSWLPW NWSDGIGKQVMYGLYAITNFIWTISLYVSNATGYLVQEAYSLDFISATADSIGKNMQTLA GVSANGFSTEGFYVGFLLLLILVLGVYVAYTGLIKRETTKAIHAIMNFVLVFILSASFIA YAPDYIKKINDFSSDISNASLSLGTKIVMPHSDSQGKDSVDLIRDSLFSIQVQQPWLLLQ YNSSDIESIGIDRVESLLSTSPDSNNGEDREKIVAEEIEDRSNTNLTITKTINRLGTVFF LFVFNIGISIFVFLLTGIMIFSQVLFIIYAMFLPVSFILSMIPSFDGMSKRAITKLFNTI LTRAGITLIITTAFSISTMLYTLSAGYPFFLIAFLQIVTFAGIYFKLGDLMSMFSLQSND SQSVGSRVMRKPRMLMHAHMHRLQRKLGRSMTTLGAGSAIVTGKKGQSGSGSSARTQADH SRPDGKEKSTLGKRIGQTIGTVADTKDRMVDTASGLKEQVKDLPTNARYAVYQGKSKVKE NVRDLTSSISQTKADRASGRKEQQEQRRKTIAKRRSEMEQVKQKKQPASSVHERPTTRQE QYHDEQTSKQSNIQTSYKESQQAKQERPAVKSDFSSPKVERQGNTVQEKTVQKPATSTTT ADRTSQRPITKERPSTVQRVPLQNTRSRPPIKTATIKKVGKKP >gi|308164998|gb|AEHO01000031.1| GENE 5 5176 - 7623 1063 815 aa, chain - ## HITS:1 COG:no KEGG:SPCG_0166 NR:ns ## KEGG: SPCG_0166 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 1 815 18 832 832 1585 100.0 0 MAYPIKYIENNLVWNKDGECYAYYELVPYNYSFLSPEQKIQVHDSFRQLIAQNRDGKIHA LQISTESSIRSAQERSKNEVTGKLKAVAYDKIDQQTDALISMIGENQVNYRFFIGFKLLL NDQEFSMKSLTVEAKNALSDFVYDVNHKLMGDFVSMSNDEILRFQKMEKLLENKISRRFK IRRLDKDDFGYLIEHLYGQTGTAYEEYEYHLSKKKLDNETLIKYYDLIKPTRCLVEEKQR YLKIQQEDETVYVAYFTINSIVGELDFPSSEIFYYQQQQFTFPIDTSMNVEIVANRKALS TVRNKKKELKDLDNHAWQSDNETSSNVAEALESVNELETNLDQSKESMYKLSYVVRVSAN DLDELKRRCNEVKDFYDDLSVKLVRPFGDMLGLHEEFLPASKRYMNDYIQYVTSDFLAGL GFGATQMLGENEGIYVGYSLDTGRNVYLKPALASQGVKGSVTNALASAFVGSLGGGKSFA NNLIVYYAVLYGAQAVIVDPKAERGRWKETLPEISHEINIVTLTSDEKNKGLLDPYVIMK NPKDSESLAIDILTFLTGISSRDGERFPILRKAIRAVTNSEVRGLMKVIEELRVENTPLS TSIADHIESFTDYDFAHLLFSNGYVEQSISLEKQLNIIQVADLVLPDKETSFEEYTTMEL LSVAMLIVISTFALDFIHTDRSIFKIVDLDEAWSFLQVAQGKTLSMKLVRAGRAMNAGVY FVTQNTDDLLDEKLKNNLGLKFAFRSTDLNEIKKTLAFFGVDPEDENNQKRLRDLENGQC LISDLYGRVGVIQFHPVFEELLHAFDTRPPVRKEV >gi|308164998|gb|AEHO01000031.1| GENE 6 7607 - 7837 124 76 aa, chain - ## HITS:1 COG:no KEGG:SPH_1415 NR:ns ## KEGG: SPH_1415 # Name: not_defined # Def: conjugative transposon membrane protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 76 93 168 168 144 100.0 1e-33 MIEGAFLKYFGIPVAFTWFMSTKTFDGKKPYGFLKSVIAYALRPKLTYAGKKVTLGRNQP QEAITAVRSEFYGISN >gi|308164998|gb|AEHO01000031.1| GENE 7 8088 - 8585 379 165 aa, chain - ## HITS:1 COG:no KEGG:SPG_1237 NR:ns ## KEGG: SPG_1237 # Name: not_defined # Def: Tn5251 hypothetical protein # Organism: S.pneumoniae_G54 # Pathway: not_defined # 1 165 1 165 165 295 100.0 5e-79 MDDMQVYIANLGKYNEGELVGAWFTFPIDFEEVKEKIGLNDEYEEYAIHDYELPFTVDEY TSIGELNRLWEMVSELPEELQSELSALLTHFSSIEELSEHQEDIIIHSDCDDMYDVARYY IEETGALGEVPASLQNYIDYQAYGRDLDLSGTFISTNHGIFEIVY >gi|308164998|gb|AEHO01000031.1| GENE 8 8702 - 8923 288 73 aa, chain - ## HITS:1 COG:no KEGG:SPG_1238 NR:ns ## KEGG: SPG_1238 # Name: not_defined # Def: Tn5251 hypothetical protein # Organism: S.pneumoniae_G54 # Pathway: not_defined # 1 73 1 73 73 101 98.0 9e-21 MNFGQNLYNWFLSNAQSLVLLVIVVIGLYLGFKREFSKLIGFLIIAIIAVGLVFNAAGVK DILLELFNRIIGA >gi|308164998|gb|AEHO01000031.1| GENE 9 8920 - 10113 916 397 aa, chain - ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 49 367 25 340 352 243 41.0 7e-64 MAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLEMLFDYVR IRFPTTDVQQVVENILQLKLSYFLHEDYGFYSYSEHYALGDIFVLCSHELDKGVLVELKG RGCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLDLAINDKTGILNIPVLTEKCQQEECI SVFRSFKSYRSGELVRKEEKECMGNTLYIGSLQSEVYFCIYEKDYEQYKKNDIPIEDAEV KNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFVDKDDSKPRSDWKLNEEWAW FIGNNRERLKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKLDEINQTQVVKDILDHAKLT DRHKQILKQQSVKEQDVITTKNNSNTNSLNIERRTFL >gi|308164998|gb|AEHO01000031.1| GENE 10 10348 - 11733 890 461 aa, chain - ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 2 455 11 461 480 439 50.0 1e-123 MKQRGKRIRPSGKDLVFHFTIASLLPVFLLVVGLFHVKTIQQINWQDFNLSQADKIDIPY LIISFSVAILICLLVAFVFKRVRYDTVKQLYHRQKLAKMILENKWYESEQVKTEGFFKDS AGRTKEKITYFPKMYYRLKNGLIQIRVEITLGKYQDQLLHLEKKLESGLYCELTDKELKD SYVEYTLLYDTIASRISIDEVEAKDGKLRLMKNVWWEYDKLPHMLIAGGTGGGKTYFILT LIEALLHTDSKLYILDPKNADLADLGSVMANVYYRKEDLLSCIETFYEEMMKRSEEMKQM KNYKTGKNYAYLGLPAHFLIFDEYVAFMEMLGTKENTAVMNKLKQIVMLGRQAGFFLILA CQRPDAKYLGDGIRDQFNFRVALGRMSEMGYGMMFGSDVQKDFFLKRIKGRGYVDVGTSV ISEFYTPLVPKGYDFLEEIKKLSNSRQSTQATCEAEVAGVD >gi|308164998|gb|AEHO01000031.1| GENE 11 11780 - 12145 364 121 aa, chain - ## HITS:1 COG:no KEGG:SPSINT_2122 NR:ns ## KEGG: SPSINT_2122 # Name: not_defined # Def: hypothetical protein # Organism: S.pseudintermedius # Pathway: not_defined # 1 121 2 122 128 218 100.0 6e-56 MRLANGIVLDKDTTFGELKFSALRREVRIQNEDGSVSDEIKERTYDLKSKGQGRMIQVSI PASVPLKEFDYNARVELINPIADTVATATYQGADVDWYIKADDIVLTKDSSSFKAQPQAK K >gi|308164998|gb|AEHO01000031.1| GENE 12 12164 - 12478 266 104 aa, chain - ## HITS:1 COG:no KEGG:SPH_1425 NR:ns ## KEGG: SPH_1425 # Name: not_defined # Def: conjugative transposon protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 104 1 104 104 203 100.0 1e-51 MELKFVIPNMEKTFGNLEFAGEDKVVQRRINGRLTVLSRSYNLYSDVQRADDIVVVLPAE AGEKHFGFEERVKLVNPRITAEGYKIGTRGFTNYLLHADDMIKE >gi|308164998|gb|AEHO01000031.1| GENE 13 12836 - 14029 1127 397 aa, chain - ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 386 4 388 414 318 47.0 1e-86 MAKVENKSDWFDRVAWGIVLSVFTLALISLYAIWVAASNDPNLGRPKYIVAVQGLWYVVS IAIVIFIMRFDSEQLFKLAPYAYATGIILLIAVLFLYNRSTFNETGAKSWFKLGPLTFQP SEVMKPAFILMLARVVNQHNLRFEHQIKSDWQLIGKIMAYLLPVAILLKLQNDFGTMLVF IAIVGGVILVSGITWKIIFPVYGVAFLLGAVAILLVTTPGGQVILGHFNFRAYQFERINS WLNPFGDTSKGAYQLWLSMKAIGSGQIFGQGFGKINVYVPVRTSDMIFSVIGETFGFVGS CALIVLYGYLIFKMVRITFETKNTFYSYISTGIIMMILFHVFENIGMGIDLLPLTGIPLP FVSQGGSALIGNMIGVGLILSMKWHHKDYIFSRVKDF >gi|308164998|gb|AEHO01000031.1| GENE 14 14046 - 14273 268 75 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1233 NR:ns ## KEGG: LGAS_1233 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 75 1 75 75 102 70.0 7e-21 MSKKLENIEIEVNEQKNASVPTWEVIIPGKKSVGIIEKDNDRYHAITAKSGYSIYSKTLE SAINELLSYFTLHEK >gi|308164998|gb|AEHO01000031.1| GENE 15 14287 - 14601 281 104 aa, chain - ## HITS:1 COG:SPy0370 KEGG:ns NR:ns ## COG: SPy0370 COG0759 # Protein_GI_number: 15674519 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 11 92 1 81 86 105 65.0 3e-23 MDTFISIFKLMKKLLINMVIIYQKCISPLFPPTCRYYPTCSKYMITAISKHGCILGIIMG VARIIRCNPFVRGGVDPVPDFFTIRRNPHPEKYMDPIIAKKFYK >gi|308164998|gb|AEHO01000031.1| GENE 16 14649 - 15638 1054 329 aa, chain - ## HITS:1 COG:BH3739 KEGG:ns NR:ns ## COG: BH3739 COG1077 # Protein_GI_number: 15616301 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 2 329 3 330 334 396 61.0 1e-110 MAKDIGIDLGTANVLINIAGKGIVLNEPSVVAVDTNSNKVVAVGTEAYKMVGRTPGNIRV IRPLKNGVIADFDITEAMLSYFINKLNVKGFMSKPNILICAPTGVTSIEQKAIIQAAEKS GGGRVYLDFEPKVAAVGAGLDIFKPQGNMVIDIGGGTTDIAVLSMGEVVTSRSLRWAGDK MNQAVINYIKNNKNLLIGQCTAEQIKIQIGTAFDADPEKVISVRGRDIIDGLPKQTVVSA TEIQSSLEDGLMSIVAATKEVLEKTPPELSADIIDRGIMLTGGGALLTNIDKLITYYLQV PVLVADNPLEAVANGTGILLKNIQEHSKK >gi|308164998|gb|AEHO01000031.1| GENE 17 15704 - 15937 287 77 aa, chain - ## HITS:1 COG:no KEGG:LJ0942 NR:ns ## KEGG: LJ0942 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 76 18 93 93 64 46.0 2e-09 MKDLGIGALIRIITYLVTIAYSFKVVKCLALEKFIRKGKTNEVKILLIFIAISLGYLVGQ FLINLMYYSMLLKWLFI >gi|308164998|gb|AEHO01000031.1| GENE 18 15986 - 16420 576 144 aa, chain - ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 8 138 4 135 138 116 52.0 1e-26 MVEAEKLLTVTVVTPDGVIYSHRSSKISFRAIDGERTILYNHLPLITPLAIAEVKVKRES KHGVDHIAVNGGYMEFSDNKATIIADSAERARNINVERAQVAKERAEKHIQEAKSHHNDR EMYKAKIALERALNRLHVRENLGK >gi|308164998|gb|AEHO01000031.1| GENE 19 16432 - 17901 1810 489 aa, chain - ## HITS:1 COG:L6563 KEGG:ns NR:ns ## COG: L6563 COG0055 # Protein_GI_number: 15673746 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Lactococcus lactis # 10 474 1 468 469 716 78.0 0 MIRGIEVDILSKGKILQVIGPVVDVQFPVDKKLPDINNALHVKNTNGDILVLEVTLELGD GVLRTISMESTDGLRRGMEVEDTGGPISVPVGKATLGRVFNVLGDPIDGGPEIADDVQRD GIHKDAPKYNDLSTSEEILETGIKVIDLLEPYVRGGKVGLFGGAGVGKTTIIQELIHNIA QEHGGISVFTGVGERTREGNDLYFEMKASGVLAKTAMVFGQMNEPPGARMRVALTGLTIA EYFRDVEGLDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK KGSITSIQAVYVPADDYTDPAPATTFAHLDATTNLERRLVEQGIYPAVDPLESTSSALDP EVVGKDHYEVAVQVQHILQRYQELQDIISVLGMDELSDEEKLIVARARKIQFFLSQNFFV AEQFTGLPGSYVPIKETIKGFKMIIDGKLDDLPEDAFRNVGPIEDVINKANTMGVVPSDP DAKAMLKAK >gi|308164998|gb|AEHO01000031.1| GENE 20 17898 - 18851 1059 317 aa, chain - ## HITS:1 COG:SPy0759 KEGG:ns NR:ns ## COG: SPy0759 COG0224 # Protein_GI_number: 15674807 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pyogenes M1 GAS # 1 317 1 291 291 244 43.0 2e-64 MTESLLELKKKISSIQKTGQITEAMRMVSGVKLNRTEKLNQAYTVYNDHIRQTISHLVSA KIFDEFNKKNVEMCDDEINSLDYSDIFELGKIVDLIQPRKEIKSTGYLVISGDRGLVGSY NNQVIKNMMDIFKDAEIEKRDVKILAVGSIAAQFFKKQNLNVVYEYKGVDDVPNYKQVRD IIQSAIKMYQNGVYDELYVCYTHHVNTLSSAFRVQKMLPISDLDISDEEVVPKDYIVAPS VDSVLRSVLPQFARSMIFGAILDAKTAEHASSMTAMQSASKNAEDVVSRLTTKLNRARQA QITTQITEIVGGANALE >gi|308164998|gb|AEHO01000031.1| GENE 21 18869 - 20380 1746 503 aa, chain - ## HITS:1 COG:lin2675 KEGG:ns NR:ns ## COG: lin2675 COG0056 # Protein_GI_number: 16801736 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Listeria innocua # 1 498 1 498 504 768 76.0 0 MSIKAEELSALIKQQLENYSEKLNVDEVGTVTYVGDGIARAHGLDNVLSSELLEFSNGSY GIAQNLEANDVGIIILGKFDDIREGDQVKRTGKIMEVPVGEALIGRVVNPLGQPVDGLGE IKTTKTRPIESKAPGVMERQSVNQPLQTGIKAIDALVPIGRGQRELIIGDRKTGKTALAI DTIINQKGQNVICIYVAIGQKESTVKNSVQTLKRFGAMDYTIVVQAGPSEPAPMLYIAPY AGTAMGEEFMYNGKDVLIVFDDLSKQAVSYREISLLLRRPPGREAYPGDVFYLHSRLLER SAKLSKKLGGGSMTALPFIQTQAGDISAYIPTNVISITDGQIFLESDLFFAGTRPAVNAG ESVSRVGGSAQIKAMKKVAGTLRVDLASYRELESFAQFGSDLDQATQAKLNRGRRTVEVL KQPLHKTLPVEDEVLVLYALTHGFLDEIPVPDILRYENELYDFFASNHNDLLDVIRKTGN LPDEDKLKAALKDFNEGFSIGKN >gi|308164998|gb|AEHO01000031.1| GENE 22 20370 - 20939 382 189 aa, chain - ## HITS:1 COG:lin2676 KEGG:ns NR:ns ## COG: lin2676 COG0712 # Protein_GI_number: 16801737 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Listeria innocua # 7 178 6 177 179 87 29.0 2e-17 MSLSREEIASRYGMALFEYAKENAKLALVHDEVDELIKVLQENPKFELLMASPLLSSNDK KQILKAVTAEMTVEMANFLHLVLEYGRFEDLGCILQAFDKFYDREMNEASGVAISAIALD DEQLAAISKSYANKFNLSNIHLTNQVDANILGGVVLKVGDHIIDGSIKNKLQQIRKQLSI SKRGETIEH >gi|308164998|gb|AEHO01000031.1| GENE 23 20939 - 21439 698 166 aa, chain - ## HITS:1 COG:SP1512 KEGG:ns NR:ns ## COG: SP1512 COG0711 # Protein_GI_number: 15901359 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Streptococcus pneumoniae TIGR4 # 22 166 19 163 164 93 40.0 2e-19 MQIMLAAIKLELGDTLYYLLIFAALLWLVNHFAFGPVSSMMEKRRKKVISDLDDAENKQK KAELLANQREAELKNSKQEATQILSIAKSNAEKTKDGIISAANSEAASIREKATQDAAQA KADALNQAHDAVADISVTIAEKLIGKNLSMADQKDLVDKFIKGLNE >gi|308164998|gb|AEHO01000031.1| GENE 24 21484 - 21696 328 70 aa, chain - ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 1 66 1 66 70 58 51.0 4e-09 MKQLAAALVAGLTALAACWGNGRVISKTIEGMTRQPEIFNELRTNMFISVGLIEAVPILA IVISFLILFL >gi|308164998|gb|AEHO01000031.1| GENE 25 21715 - 22431 446 238 aa, chain - ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 1 238 1 237 238 181 41.0 2e-45 MGEKSIVVNFLGLNFNITNCFSGTLVAIAIFGLVYWLSGQVCLKPGKKQNFLEAIIDFTN GIVKNNVSDSEVQSKLSLYAFTLFLFIFFMNQLGLFLEVKINDQILVKSPTASPLITMTM AMMTLLLSYHFGIKKFGAKGFIANYAKPVGFLLPINVIEEFTNFLTLSLRLYGNIYAGEV LLNLIGEHLAKSAGWATIFASVPLTMIWQGFSIFIGSIQAYVFVTLSMVYINKKVMEE >gi|308164998|gb|AEHO01000031.1| GENE 26 22526 - 23155 857 209 aa, chain - ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 284 66.0 9e-77 MGKFTVLNHPLIQHKLTIIRKKTTGTNEFRQIVGEIGGLMVYEMTRDLPLKNVEIETPIG KTVQKELAGKKLVVVPILRAGLGMVEGVLQMIPSAKVGHIGMYRDEETLKPHEYFFKMPP EVEQRQCIIVDPMLATGGSANLAIGALKKRGVTDIKLAVLVAAPDGVKAVQKENPDVDIY AAAEDEKLMSNGYIFPGLGDAGDRLFGTK >gi|308164998|gb|AEHO01000031.1| GENE 27 23253 - 24269 1017 338 aa, chain - ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 7 331 7 338 345 278 47.0 1e-74 MEGGNNKLNTQIFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGR PSDNPLIVTVADEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGALPDAVTGGLPT AAFRCPQDPLTNELIQTLARPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNGPTKI GLESTIIDLSVDQPVVLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAP SSPVYIVDDPADFAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYF DSNEQIKTIYVQGFAKGNISAAYMNRLNKAASGNHFKK >gi|308164998|gb|AEHO01000031.1| GENE 28 24253 - 25092 331 279 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 1 277 16 289 294 132 35 5e-30 MPSFRTLRTKFIAENPQILAEDVDFVLAERQNLTPSQYRLQLDQDLPKEQLTQIKKDLNK LHKGMSPQYIVGHAWFLGYSIDVHPGVLIPRFETEELVTWALDYLKDNSKVLDLGTGSGA ITVALAKKAECKNINNIVYYASDITDSALRQSEENFLKFNLNDIITRKADVLIGLEKFDL IISNPPYIKNSEKDLMDQNVIKNEPEEALFAGADGLDFYRRFVKQVPKHLNKNGHFFLEF GFSQKDLLAELFAKELPEFTIEFKNDLAGKPRMVHGRWK >gi|308164998|gb|AEHO01000031.1| GENE 29 25085 - 26173 1418 362 aa, chain - ## HITS:1 COG:L0373 KEGG:ns NR:ns ## COG: L0373 COG0216 # Protein_GI_number: 15672577 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Lactococcus lactis # 7 357 4 355 357 398 59.0 1e-110 MDKVMAQLESLLAHYEELQEMMSDPEVINDTKKYMEISKEEADLREVVEKYKLFCNDQSE IANNKEIISHESDSDLIDMAKEENIALEEEVNKLEEEIKILMLPKDPNDDKDIIMEIRGA AGGDEASLFAGDLLRMYQKYAENQGWQMSIIDAEETEVGGFKRVAVMISGDKVYSKLKYE NGAHRVQRIPVTESQGRVHTSTATVAVMPEYEQVDLDLDPKDIRVDVYRSSGAGGQHINK TSSAVRMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDFYESQNQASYDAKRKESVG TGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELEDIISALVLYYQTKQLEKMADD NA >gi|308164998|gb|AEHO01000031.1| GENE 30 26206 - 26799 688 197 aa, chain - ## HITS:1 COG:SPy1140 KEGG:ns NR:ns ## COG: SPy1140 COG1435 # Protein_GI_number: 15675117 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 196 1 188 189 263 61.0 1e-70 MPQLFFRYGAMSSGKTIEILKVAHNYEVQGRKIVLMTSGLDDRSGVGVVSSRIGLHRTAV AIDHDMNIFSYVKEENKKSLNIEHEPLACVLIDEAQFLTRQHVLQCTHIVDDLKIPVMAF GLKNDFQNHLFEGSENLLIFADKIEEMKTICHYCGHKATMNLRINNGVPVYEGEQVQIGG DESYYPVCRHHYFNPEK >gi|308164998|gb|AEHO01000031.1| GENE 31 26929 - 28281 1306 450 aa, chain + ## HITS:1 COG:SPy1035 KEGG:ns NR:ns ## COG: SPy1035 COG0769 # Protein_GI_number: 15675032 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 3 450 1 444 445 434 48.0 1e-121 MFIKTNLAKFLGKVSYLVLHNIFNGGTSFPGKLAVKIDHNILEELASDYEVILVTGTNGK TMTTSIITEALKEKYGDVLTNPSGSNMLQGIITAFLAHRKKHSQRKIAVLEVDEAYLKII TTYLKPKVVVLTNIFRDQMDRYGEIYTTYEKIITGIKNCPDATIVANGDASIFSSDDLTN QKIFYGFDLNNSDQKTDLLAPVNTDGVLCAKCHNILHYHEIVYANLGNYFCPKCNFHRPK LKYTVNEIVKQTPKSLTFKMGTKVYQMAIGGTYNIYNALAAYSVAKEFGLSDDEIARSFS KNKRIFGRQELINYSDKEIILILVKNPVGLDSVLNMLNTENDDYSLITLLNANHADGIDT SWIWDSNYESLHKENIKHILVGGLRHQDMHLRLKVAGFDPKIMETTPTDDELIDAIPNLP CKKIYILSTYTAMLSLRKKMAERKIINVNM >gi|308164998|gb|AEHO01000031.1| GENE 32 28284 - 29297 925 337 aa, chain - ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 2 334 6 314 328 193 38.0 4e-49 MEFLKTKKLIEMMVASKIVPGVNYLIFKNNDVWQNTVGLSQIIPQPVPLKADAIYDLASL TKVIGTTNVLLKLADEGKIAFNDTLKMYLPEFLDKRVKLSDLLTHTSGIKGWIANRDQLN ARELLQAIINLPVTEEFEHKVRYADTNFILLGLVLEKIYQQDLQDIIMHEVIKPAGLKAT SFAPDANKTVPTAMNQQGIMLCGVVHDPKARVLGKSCGSAGLFSNIADLYRLAQGYVGLR DDILPFGSATLSELYKIKTPAKLHARSWGWDLCFDPSDHHTLIYHTGFTGTFMLLDKVKK TGLIVLTNRIYPSGHNLIFLKMRQKIIESFLLENSII >gi|308164998|gb|AEHO01000031.1| GENE 33 29636 - 30865 848 409 aa, chain - ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 407 1 396 399 225 36.0 2e-58 MKKILIVAKETFFRQIKSWGFIFMVLGPFIIVGINIIIGLATAKSAHQKNDTDNRIAVVC KDNLLKTNLKANPDVKLYDNQATASKLFEKGKIKGYLYLTIKKNQQLDATVYLQPTDSSN IHKRSSVIISGLQNNINFATAKLSNEQKKKIMTVPEVHVKQAEKSKEIKNDTGIKIICFY AVCFILYFILLIYNGVTTQEIATEKGTKIMEVVFSSMPGGDYFIGKIMGLIGEVLLHIGI YLVGGYSIWRLLPYFKEGKTLVHQFDPFVGAILGNIGIYSLIYVVAALIICLILAALCGA LASKPENAGKTAQFMTILIILCFILATQFNNNVHSNLLFVLSYVPFISSFMMPIRIIYEV ASTWEILISISITVGFLIGILILIRRIYPRLILQTDDSVFKALKKAMMK >gi|308164998|gb|AEHO01000031.1| GENE 34 30862 - 31755 1055 297 aa, chain - ## HITS:1 COG:SP1717 KEGG:ns NR:ns ## COG: SP1717 COG4152 # Protein_GI_number: 15901551 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 294 1 294 297 346 57.0 4e-95 MLTIKQLNKSFGNKQVLYDVNFTAQDGHILGLIGKNGSGKTTIFHSILKFVEYSGDISID GHPFGAGDYNSVGYLPEERSLLPKFKIKQQIKFLARLKGMDDKEIDKLLADWMLRLEVKG KVDDKIKSLSKGNQQKVQMIATLIHNPQLIILDEPFSGLDPLNVEIMKREILNQKSKGAT VIFSDHNMSNVEELCDDVVMIDNGKVVLNGNTYDVRNKFGLTRIYVRTSMAIEDLAKIEG VEKAELLNDGRIKLYLTSAEYGYTIFDILSQGKYIQTFDQEPPTLNEIFKQKAGEGL >gi|308164998|gb|AEHO01000031.1| GENE 35 31847 - 33187 1492 446 aa, chain - ## HITS:1 COG:L0012 KEGG:ns NR:ns ## COG: L0012 COG0166 # Protein_GI_number: 15674150 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Lactococcus lactis # 5 446 4 448 448 578 64.0 1e-165 MTKVLSFDDSKLTPFVHDNELKEMQAMVNAADQELREGTGAGADFRGWIDLPVNYDKDEF ARIKKAAAKIQKDSEVLIGIGIGGSYLGAQAAIEFLNSAFYGKGKEKYPTVVFCGNSISG SYLYDLIEWLGDKDFSLNIISKSGTTTEPSIAFRVLKEKLVAKYGKEEAAKRIYATTDRQ KGALKTEADAEGYEEFVVPDDLGGRFSVLSAVGLLPIAVAGGDIDALMKGAADARSDYQT TDVLGDNPYKYAALRNILYRKGFTTELLENYEPTLRMFGEWWKQLFGESEGKDQKGIYPS SANFTTDLHSLGQYIQEGRRNLMETVVRVENPSHDITIPDDAENLDQLNFLSGKTMNYVN DRAYEGVVLAHTDGGVPVMTVNIADQSEHTLGYMIYFFELAVGISGYLNGINPFNQPGVE SYKRNMFGLLNKPGYEDLHDDLTKRL >gi|308164998|gb|AEHO01000031.1| GENE 36 33490 - 35589 1393 699 aa, chain + ## HITS:1 COG:SPy0807 KEGG:ns NR:ns ## COG: SPy0807 COG1368 # Protein_GI_number: 15674849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 699 44 735 736 532 44.0 1e-151 MFAFYFYFKLQLNDYYQQIIALISSLGSTIILFSIAFYITKPLLSYIFMILLDIANTTLL FSNIIYFRQFNDFLTFKTIQNTSKVTQGLGKSTVALMQPLDILIWLDIIVIVCLLLLKII KLDQRHYNINLSFAITSFGLFVALLNLALAETARPKLLRNTFDRSYVVKYIGLSNYTLYD LTRSAQSGSSKKNINASQINKILAYTRKKYAGINPKYFGKAKGKNVIILHLESFQQFLID LKINNKEVTPFLNSIYHSKNTISYKNFFHQVGLGRTSDAETMLETGTFGIADGPLFSSLG NENTFQAAPQILRQRGYTSAVFHGNIGTFWNRNEVYKNLGYNYFFDSSYYFNEKKDKVGY GLKDKLLFAESIKYLEQLQQPFYVKFLTVTNHYPYNMDTEDLDKDFKTTNTNNTTINNYF QTAHYLDQSIREFFEYLKKSGLDKKSIVILYGDHYGVGSSDNETNALAPILNKADKPWSE YDTINLQRVPFMIHMNGLKGGIKSNIAGEIDVLPTLLHLLGIDTKNYIQFGNDLLSNKRQ KFVIFRNGTIITPHYIIVGGRNNLNRIYDFNTGEKINNLTDKQKAHIEHLIKQAAKSLRY SDLLNNRNLLRFYTPKGFIPVDPLTFNYQLNYLNMIRIRKMVGNNSTSLYSENRGSTIDM YKTDAFQINKDKLFDLPANVIKTRKEAKNLLKEDAPLNK >gi|308164998|gb|AEHO01000031.1| GENE 37 35705 - 36418 468 237 aa, chain - ## HITS:1 COG:lin1542 KEGG:ns NR:ns ## COG: lin1542 COG0745 # Protein_GI_number: 16800610 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 232 1 226 228 182 39.0 4e-46 MNILLIEKEEAIIQILEAFFMKEKWNYDIATDGVIGTQMYSLNKNKYNLVLVDVELPSLD GVEVVKYIRNISLETPILVLAEKKFEEELISSLQQGADGYLARPFSPLLMVARIKALYRR INLERGKRVNLNIEQVICTKYLKIYPEKHKVIFNKQEINSLSPKEFAILTILASSPTQVF SRKKLLELVWGNEYFGDARTIDTHVKTLRQKLEKVGPHVIITVWGVGYKYDELNFDI >gi|308164998|gb|AEHO01000031.1| GENE 38 36420 - 36809 408 129 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1291 NR:ns ## KEGG: FI9785_1291 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 129 1 129 130 164 63.0 1e-39 MLYIACGIILFMIGLIWLISPAKKPNNLYGYVSYLAMVSEEGFKFAQKSAAKYFMLYGSI QFGLGLIIHLLKWDGCIVLWLLTFYLFIIFPFISTEKALQRFLKARDLLPYDYIEPDKVK HKLTKGFKD >gi|308164998|gb|AEHO01000031.1| GENE 39 36821 - 37618 615 265 aa, chain - ## HITS:1 COG:lin2215 KEGG:ns NR:ns ## COG: lin2215 COG1482 # Protein_GI_number: 16801280 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Listeria innocua # 1 261 60 316 318 256 48.0 3e-68 MRELYQQKPDLFGQPHAAEFPLLVKLLDANDNLSVQVHPDDEYAKIHENDSGKTECWYIL QAEPGAKLIYGHHAETKEQLAAWIKNGQWNKLLRYVPIKTGDFLYVPAGCVHALTKGIMV IETQQSSDVTYRLYDWDRIDNKTGQKRELHIQQSLDTIQVPHVDPYLERAVSKFPAATLV RLANPPYSPHFYLWQLDVFGEFEWNMLNYQYLLVSVISGQGKLIFDGNDYNLSLGDSFIV PNKYNNFKFVGESLKIIISAPTNEE >gi|308164998|gb|AEHO01000031.1| GENE 40 37816 - 39207 909 463 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805664|ref|ZP_07699705.1| ## NR: gi|309805664|ref|ZP_07699705.1| hypothetical protein HMPREF9213_0583 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_1144 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9213_0583 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_1144 [Lactobacillus iners SPIN 2503V10-D] # 1 463 1 463 463 877 100.0 0 MVLSIADCKYFANRVNDFLTFPELEQLNSEQLWRLKNLVRNIKNISYDCFSTSVKAYALT GDAIYFEAFDKLLRKDQLLSPILNWSITNQTMPSFLLDRDGQIIINEGIKHDSWYVYDFK YDYHLKIPELKSVCNKLGLTSAELLSLVQKCSWQIVVKLLFLIQRLIVSKHYYMNYLNMA SIIKKAIVDDKIVWLVNILEFVYQRKLTLTCKFDEQWYIDNSVYPLEFCKENMLSGDLLT EDDYNMLVQEKIAIMFRNYEHMEVLSAFIHDYLEKYLTSQLTYEDARLDVNKVINGVNLK KNITALSKIAVKSIPLSLNKILEDVMNDTQSCDQDLLGFNIFADSDANPYYCNYTNGLRY FKLATKYQLVLKYMQKVFSDDNTIYRWLLWWRLQQWLRQNKVVAKGYITTFSYISKLPVE LTEWLEQGVVPQKITLTDNVYVIIPKRIQKRLQKYPLNLQDYE >gi|308164998|gb|AEHO01000031.1| GENE 41 39339 - 41306 1285 655 aa, chain - ## HITS:1 COG:SP0913 KEGG:ns NR:ns ## COG: SP0913 COG0577 # Protein_GI_number: 15900794 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 3 655 2 661 662 229 30.0 1e-59 MSFLMAKKFALKNLKANKVLEIPFVLSSGIMFILFNIMVSLASNSYVIHRHKFLISIINM GIVIVGILAVIFVLYSVSVLLKRKNKTLALYSILGLEKKHIRKIISIEFMYLFTMILAIA TVGGYIFGQLAFLGLNYLMRDMGVNVMHYPLSILAIVLTMVVVIILYLITVIRLSFTVYI STPTELLNKQHSGEGEPKSRYLVLLFGLITLSAGYWIALTTKGTLESITNFFIAVLLVIF ATYALYVALTVVALKLQKKHSSYFKPVKFLSVSGLLYRIKSNALSLASIAILGSGVIVTL SAVTMIYYSANMNFKNAIPRSYELISGENIDLHNYKKVSNTLKKQVEKTVDNKSQVVHSY VGYNCESWCEKKGDQLKILNNESLSSRTSKMLYVGDLVGYNANLHKKIKLQDDEILLCNN RIEKLNVHKLRIGGRTFKVRTVDNFVPANVAIESYGIIVKDLKTMLFFSKLFVKATGGMA TNAKISCSYNWDVKGISYKKYSKRVHVLSANKVEFVDAKEFLTRFYEINGGFLFIGIIIG IIFLVGTILIIYYKQVSAGYEDRHKFRIMKEIGLEDALIKKSNTSQLMLLLYSPLCVSII HCIVASKIVFNLVQMFGGIKWQNYNICLAAVISIFFIIYLLVFKITSRIYYNIVR >gi|308164998|gb|AEHO01000031.1| GENE 42 41306 - 42061 274 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 4 250 5 238 311 110 28 2e-23 MAILELKNIKRTYKTKCVVTEVLKGIDFSVEAGEFVAIMGESGAGKTTLLNVIATFDKPT SGSVILNGKEISTLKNSEISTFRRNKLGFVFQDFNLLDQFNNRDNIYLPLVLSNQKPQLM QERLDQIKDQLGISELLNKYPYEISGGQKQRVAIARAIITKPDLVLADEPTGSLDSTSSE IILNMFAKINQAGQTIMMVTHSLRAASFAKRILFIKDGIVYHEIYRSQAESQSEFMERIS QAQFMLKRGEQ >gi|308164998|gb|AEHO01000031.1| GENE 43 42161 - 43078 496 305 aa, chain - ## HITS:1 COG:SA2417 KEGG:ns NR:ns ## COG: SA2417 COG0642 # Protein_GI_number: 15928210 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 7 299 3 295 295 195 36.0 9e-50 MEKIKKFVKTEVKICVAVFIVLLIFFFVFLFANLDFSLFYLSLEIVTFCLLIYLFICWVT FKKKENLQEQVNQLLIENRQLKNTIDIERKDLEEYFLLWVHQIKTPITVSDLILQKEKNP YTCQLKEQMFYIREYTNMAINYMKLKDRQADMDIAEVEIDKLLKSLLRKYSGLFIDKNIS LDYQPIDTKIITDARWATILIEQILANALKYTNSGKITLSFDRDKNALKVKDTGIGIKSE DINKIFDRGYSGFNGRINEKSSGIGLYLVKKIAILLNIKIEVCSTVNVGSEFIICFPKQS YNFVR >gi|308164998|gb|AEHO01000031.1| GENE 44 43083 - 43751 575 222 aa, chain - ## HITS:1 COG:SA2418 KEGG:ns NR:ns ## COG: SA2418 COG0745 # Protein_GI_number: 15928211 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 219 1 219 221 199 47.0 2e-51 MKILIVEDEATLASLLEEELVQWGYLSKKASNFNDILAEVTDFKPDLVLMDVSLPFYNGF YWTEKIRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYD YKVGSDSIMYGDLKLNLSVANLEGKNFVLELTRTELLILEILFNFKNKIAKREAIINYCW QGDAFIDDNTLAVNIARLRKKLKTVGYDELIQTKKGIGYYLK >gi|308164998|gb|AEHO01000031.1| GENE 45 43851 - 44918 1045 355 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 5 287 58 349 419 128 31.0 2e-29 MENQGNYADLQSKINATLQSPKNLPTITQAYPGWLYDAAKLNKLVNLKPYIENSQIGWGS VAKSDIKDKLLLGAQIGGKQYGIPFNKSSEVLFYNKDVFDKYNLKVPRNMSELAQCAKTI YKKSNHALVGAGVDELANYYILSMKEQGIDFDKNIDMTCPESKKALNWYIKGLKEGYLQI ASANGYLSTDFGHQKVAMFISTCASEAYVKMGMGKNKFNYGVAPRPSKYNVQQGTDIYMF NKGTAEQKSAAFMFIKFMLSKRNQLKLAHATGYMPVLNSILKSDDYKCSKDSKVAGILDK TTANIYNLKISKNENAAYFQLKSSMQAILSAAKKGDSVVPVIKANQLKLAHCWKQ >gi|308164998|gb|AEHO01000031.1| GENE 46 44795 - 45142 201 115 aa, chain - ## HITS:1 COG:no KEGG:FI9785_470 NR:ns ## KEGG: FI9785_470 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 67 1 67 430 65 44.0 8e-10 MNFKKKLLLLATSALAMLTLSACSKNSSSTDGKVATNITKKTTVVFWHSMTGASEKCMKQ YAAEFEKNILTYILNWKTKVIMQISSLRLMQLCNHLRICQLLLRLTQVGCMMLLN >gi|308164998|gb|AEHO01000031.1| GENE 47 45626 - 48310 3682 894 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0004 NR:ns ## KEGG: HMPREF0424_0004 # Name: not_defined # Def: triacylglycerol lipase # Organism: G.vaginalis # Pathway: not_defined # 76 418 38 377 392 322 46.0 4e-86 MVFNRRRSNLCYGIRKLAIGVVSMVISVAFLTEISVSQAKENTSNYQEHLVDKKASVADL TKTRKKSKNQVESFRPLNQQDMIKLAQGQLTLPGGQVDPSFYHEPVLDVAGDDDHDGLKN GQELYVEKVNNREFLGYHTHPLLSDSDGDGLLDADEIKNHTDPLVWNICDRDLAMMMELS YRDDNYIQQVLDSHHPLKEKYNGRQEYELMHTELAPFWKAEKSFHESDGLDATFFVTHSD LPYLKDNQVQVLAIRGTKGGADLDDDLNLTLGMTPGQVDSLNKILKQLQNEGALTNTYLT GHSLGGYLAMTALVEARDKGYTGIKKAVTFNAPKIRGNLFNKKMQRVAKEANLLTQRGEA IHYAVSNDNVISAVGNFIGAKSVGKSANGHSSRTYFEDRIMQFGFKQGRRKSSMAGTGDQ EANLKKVLAGFSNPVVATQADAYPAKIKNHIVTEVGVIPDLTQCILNRNELPLAKVEDKT SSMHLYQPYQIGKGQCGSLSLTYQDGSKKTYFVTIDVQKAKLAGVVTSKGEPLMQETKPA GVVTSQVDPLVQKVKPAGVVTSKGDPLVQKAKPEGVVTSKVDPLVQEAKPAAVVTSKVDS LVQKAKPAGVITSKVDPLVQKVNPAGVVTSKVDPIVQKAKPEGVVTSKGEPLVQKAKPAG VVTSKGEPLVQKAKPEGVVTSKGEPLVQEVKPTGVVTSKGDPLVQKAKPAGIITSKVDPL VQEAKPAGVVTSKDDPLVQKANPAGVVISKGEPLLQKANPAGVVISKGEPLVQETKPAGV VTSKVDPLVQKAKPAGVVTSKVDPLVQKAKPAAVITSKVDPLVQKATPAGVVTSKGDPLV ELTKADHATELSHLTELLEKKYHLSSRNNLVNRYHQMYILMLKNCLNWEQIVEF >gi|308164998|gb|AEHO01000031.1| GENE 48 48483 - 48653 59 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309808127|ref|ZP_07702040.1| ## NR: gi|309808127|ref|ZP_07702040.1| LPXTG-motif cell wall anchor domain protein [Lactobacillus iners LactinV 01V1-a] LPXTG-motif cell wall anchor domain protein [Lactobacillus iners LactinV 01V1-a] # 2 56 611 665 665 102 100.0 8e-21 EKPVSTDKTPTSGKEKLPQTGETSDIASLVAALCLAAGLVVLPKKKNRIKDCVLLN Prediction of potential genes in microbial genomes Time: Wed Jul 13 03:06:20 2011 Seq name: gi|308164939|gb|AEHO01000032.1| Lactobacillus iners LactinV 09V1-c contig00005, whole genome shotgun sequence Length of sequence - 51289 bp Number of predicted genes - 58, with homology - 57 Number of transcription units - 19, operones - 10 average op.length - 4.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 893 789 ## COG2017 Galactose mutarotase and related enzymes 2 1 Op 2 24/0.000 - CDS 910 - 2304 1226 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 3 1 Op 3 4/0.000 - CDS 2315 - 2839 756 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 4 1 Op 4 5/0.000 - CDS 2843 - 3754 778 ## COG4974 Site-specific recombinase XerD 5 1 Op 5 . - CDS 3770 - 4108 286 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation 6 1 Op 6 6/0.000 - CDS 4041 - 5084 903 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation 7 1 Op 7 . - CDS 5134 - 5877 724 ## COG0551 Zn-finger domain associated with topoisomerase type I 8 1 Op 8 13/0.000 - CDS 5907 - 7220 1233 ## COG0550 Topoisomerase IA 9 1 Op 9 2/0.200 - CDS 7290 - 8135 713 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 10 1 Op 10 8/0.000 - CDS 8184 - 8936 703 ## COG0164 Ribonuclease HII 11 1 Op 11 . - CDS 8933 - 9772 823 ## COG1161 Predicted GTPases - Prom 9818 - 9877 13.4 12 2 Op 1 . - CDS 9986 - 11161 949 ## COG0793 Periplasmic protease 13 2 Op 2 . - CDS 11202 - 11369 134 ## gi|259500647|ref|ZP_05743549.1| carboxy-terminal processing protease CtpA 14 2 Op 3 . - CDS 11374 - 11601 273 ## COG4479 Uncharacterized protein conserved in bacteria 15 2 Op 4 . - CDS 11610 - 12461 821 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 12510 - 12569 11.0 + Prom 12397 - 12456 8.3 16 3 Tu 1 . + CDS 12587 - 13252 609 ## COG1272 Predicted membrane protein, hemolysin III homolog 17 4 Tu 1 . - CDS 13350 - 14726 1519 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - Prom 14908 - 14967 5.8 + Prom 14446 - 14505 6.8 18 5 Tu 1 . + CDS 14650 - 15594 632 ## COG1284 Uncharacterized conserved protein + Term 15596 - 15647 9.6 - Term 15583 - 15633 3.2 19 6 Tu 1 . - CDS 15660 - 16982 1070 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - Prom 17074 - 17133 8.4 - Term 16989 - 17042 -0.9 20 7 Tu 1 . - CDS 17193 - 18440 1102 ## COG0457 FOG: TPR repeat - Prom 18465 - 18524 1.9 - Term 18465 - 18511 5.5 21 8 Op 1 3/0.000 - CDS 18530 - 18805 512 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 18879 - 18938 4.6 - Term 18882 - 18937 -0.8 22 8 Op 2 3/0.000 - CDS 18952 - 20259 1637 ## COG1160 Predicted GTPases - Term 20277 - 20308 -0.6 23 8 Op 3 21/0.000 - CDS 20330 - 21517 1710 ## PROTEIN SUPPORTED gi|227520801|ref|ZP_03950850.1| 30S ribosomal protein S1 24 8 Op 4 . - CDS 21545 - 22243 677 ## COG0283 Cytidylate kinase - Prom 22268 - 22327 5.2 25 8 Op 5 . - CDS 22331 - 22924 237 ## COG3601 Predicted membrane protein - Prom 23120 - 23179 9.4 - Term 23149 - 23189 7.5 26 9 Op 1 . - CDS 23192 - 23653 533 ## gi|309807108|ref|ZP_07701087.1| hypothetical protein HMPREF9212_0782 27 9 Op 2 . - CDS 23589 - 23972 268 ## gi|309804145|ref|ZP_07698223.1| hypothetical protein HMPREF9214_0671 28 9 Op 3 12/0.000 - CDS 24039 - 24758 790 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 29 9 Op 4 21/0.000 - CDS 24777 - 25343 560 ## COG1386 Predicted transcriptional regulator containing the HTH domain 30 9 Op 5 . - CDS 25345 - 26076 655 ## COG1354 Uncharacterized conserved protein 31 9 Op 6 . - CDS 26073 - 26474 354 ## LGAS_0885 riboflavin biosynthesis acetyltransferase RibT 32 9 Op 7 . - CDS 26443 - 26973 471 ## COG4974 Site-specific recombinase XerD 33 9 Op 8 . - CDS 27003 - 27332 345 ## COG4974 Site-specific recombinase XerD 34 9 Op 9 . - CDS 27325 - 28206 462 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains - Prom 28236 - 28295 8.8 - Term 28255 - 28303 6.1 35 10 Op 1 12/0.000 - CDS 28321 - 30090 2193 ## COG0469 Pyruvate kinase 36 10 Op 2 3/0.000 - CDS 30128 - 31087 1102 ## COG0205 6-phosphofructokinase - Prom 31155 - 31214 5.4 37 10 Op 3 . - CDS 31226 - 32332 927 ## COG0587 DNA polymerase III, alpha subunit 38 10 Op 4 . - CDS 32371 - 34347 1474 ## COG0587 DNA polymerase III, alpha subunit - Prom 34380 - 34439 8.9 + Prom 34350 - 34409 9.0 39 11 Tu 1 . + CDS 34434 - 34757 296 ## LGAS_0879 hypothetical protein + Term 34772 - 34820 2.7 - Term 34821 - 34851 2.0 40 12 Tu 1 . - CDS 34860 - 35051 289 ## PROTEIN SUPPORTED gi|42519001|ref|NP_964931.1| 50S ribosomal protein L32 - Prom 35087 - 35146 6.2 - Term 35123 - 35163 2.5 41 13 Op 1 4/0.000 - CDS 35175 - 35969 168 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 42 13 Op 2 . - CDS 35974 - 36900 1167 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 43 13 Op 3 . - CDS 36907 - 38829 1194 ## COG1835 Predicted acyltransferases 44 13 Op 4 . - CDS 38846 - 40129 1687 ## COG0536 Predicted GTPase - Prom 40156 - 40215 3.2 45 14 Op 1 . - CDS 40217 - 41224 894 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 41244 - 41303 2.3 46 14 Op 2 . - CDS 41320 - 42033 536 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 42092 - 42151 6.5 + Prom 42076 - 42135 13.0 47 15 Op 1 . + CDS 42160 - 43089 860 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 48 15 Op 2 . + CDS 43101 - 43217 130 ## + Term 43243 - 43277 -0.5 - Term 43231 - 43265 0.2 49 16 Op 1 . - CDS 43281 - 43658 442 ## LJ1063 hypothetical protein 50 16 Op 2 . - CDS 43695 - 44009 432 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 51 16 Op 3 9/0.000 - CDS 44011 - 44892 1179 ## COG1760 L-serine deaminase 52 16 Op 4 . - CDS 44912 - 45529 703 ## COG1760 L-serine deaminase - Prom 45583 - 45642 5.6 53 17 Op 1 . - CDS 45655 - 46173 394 ## LBA0863 hypothetical protein 54 17 Op 2 4/0.000 - CDS 46245 - 46832 668 ## COG0218 Predicted GTPase 55 17 Op 3 4/0.000 - CDS 46822 - 48111 275 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 - Prom 48148 - 48207 6.7 - Term 48168 - 48201 2.2 56 17 Op 4 . - CDS 48219 - 49547 1939 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 49590 - 49649 14.5 - Term 49622 - 49671 6.7 57 18 Tu 1 . - CDS 49674 - 50864 1374 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 50925 - 50984 6.7 58 19 Tu 1 . - CDS 51034 - 51288 185 ## gi|309807951|ref|ZP_07701879.1| conserved hypothetical protein Predicted protein(s) >gi|308164939|gb|AEHO01000032.1| GENE 1 2 - 893 789 297 aa, chain - ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 1 289 1 294 298 184 34.0 1e-46 MEYQLKNSFLTLTVSTLGAEIQSVVDNNSKCEYIWTAKKEVWPQHAPVLFPIVGRLKNDQ YTYKNKTYHLGQHGFAHKKEFELDQQDDTSITLLLKSDEETKKQYPFDFEFRVKYSLVNN LIKEDFIVTNTGSEEMIFGVGGHPGFNLPTNQGLKKEDYYFKFDPSIDHVRIPLEAPLLD WENRSLVSTNSLFEINDQLFEKDAWIFQLDNHPTKVSIKTDKSNYHINVHIDNAPYVGLW SQYPVTADYICIEPWWGIADTKDTNGKLEDKIGMNRVAAGQTWSNGFSMAFHDENKI >gi|308164939|gb|AEHO01000032.1| GENE 2 910 - 2304 1226 464 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 4 464 9 466 466 476 54 1e-134 MVKTPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGV GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKI EATEHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDEDDEELDDQIIDKRA SVADKLKKGLLENHEVTLYVESATKANQMNDMIGQMGMDMSSLMGGLMPKKRVRRTLSVK DARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREGVQR DILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLRESD FVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRLATIL EKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL >gi|308164939|gb|AEHO01000032.1| GENE 3 2315 - 2839 756 174 aa, chain - ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 2 174 6 179 179 184 57.0 5e-47 MTTICAVRHKGKIAIAGDGQVTLGEKVIAKSTAKKVRRIYHNQVVVGFAGGVADAVSLQD MLEGKLETYSGDLRRSTVEMAQGWRKDPTLAKLQAMMIAFNDKDLLLISGNGEVLEPDED VVAIGSGGNYAQAAALAMIRHSSDMDACDIAKEAVLIAAGIDVFTDDKITSDEI >gi|308164939|gb|AEHO01000032.1| GENE 4 2843 - 3754 778 303 aa, chain - ## HITS:1 COG:BS_codV KEGG:ns NR:ns ## COG: BS_codV COG4974 # Protein_GI_number: 16078677 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 3 300 7 304 304 243 43.0 3e-64 MIFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVL KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDNKEN EAK >gi|308164939|gb|AEHO01000032.1| GENE 5 3770 - 4108 286 112 aa, chain - ## HITS:1 COG:BS_gid KEGG:ns NR:ns ## COG: BS_gid COG1206 # Protein_GI_number: 16078676 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Bacillus subtilis # 9 110 334 435 435 120 56.0 8e-28 MKQNCVRILFFAGQMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPKNTAIGSMANYI TSTSAKNFQPMNASYSLMPQLEKKIRNKQERHLMQSKIALDELNEFKNKVGL >gi|308164939|gb|AEHO01000032.1| GENE 6 4041 - 5084 903 347 aa, chain - ## HITS:1 COG:lin1315 KEGG:ns NR:ns ## COG: lin1315 COG1206 # Protein_GI_number: 16800383 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Listeria innocua # 1 342 1 341 434 463 66.0 1e-130 MPERVTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQ LSNAVGLLKEEMRQLDSLIMRVADETAVPAGGALAVDRDSFSKKVTQIINELPNVHVHNE EIKDIPKDGINIIATGPLTSDLLATKIKEFCGSESLHFFDAAAPIITAESIDYNIVYKKS RYDKGEAAYLNCPMDKEQFVNFYNNLITAETAELHEFEKNNVFEGCMPIEVMAKRGEKTM LFGPLKPVGLEDPKTGKLPYAVVQLRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLA NAVFVRYGKMHRNTYISSPEVLNSTYETKLCKNFIFCGSDDGCRRIC >gi|308164939|gb|AEHO01000032.1| GENE 7 5134 - 5877 724 247 aa, chain - ## HITS:1 COG:SP1263_2 KEGG:ns NR:ns ## COG: SP1263_2 COG0551 # Protein_GI_number: 15901123 # Func_class: L Replication, recombination and repair # Function: Zn-finger domain associated with topoisomerase type I # Organism: Streptococcus pneumoniae TIGR4 # 105 243 1 140 146 198 63.0 1e-50 MSTDQHFTQPPARYTEASLVHTLEENGVGRPSTYAPTIDTIQKRYYVKLEGRSIVPTELG EIVNKLIEKFFPDIVNVDFTAQLENDLDSVEVGKKDWVKIVDAYYQPFSKELAKADDQIE KIQIKDEDAKFDCEICGAPMVIKLGRYGKFYACSRFPDCRNTQAITKKVGVICPKCGKGD IIEKKSKKNRKFYGCSNYPDCDFVSWDQPIARTCPNDGHFLVQKKTKKGLLVLCPNGDYR EDQEESN >gi|308164939|gb|AEHO01000032.1| GENE 8 5907 - 7220 1233 437 aa, chain - ## HITS:1 COG:SP1263_1 KEGG:ns NR:ns ## COG: SP1263_1 COG0550 # Protein_GI_number: 15901123 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Streptococcus pneumoniae TIGR4 # 9 437 15 438 553 516 62.0 1e-146 MPTAKVKKNLVIVESPHKAKTIEKYLGRNYHVIASKGHVRDLPKSQMGVDIDNDYEPKYI SIRGKGSTIKELKAEAKKAKNVYLASDPDREGEAIAWHISHILGLDPKDMNRVAFNEITK DAVKAAFKEPRAIDMNIVDAQQARRVLDRLVGYSISPILWAKVKKGLSAGRVQSIALKLV IDREKEILNFVPQEYWTISSTFKKNEQKSTFNGDFYGLAGKKIDLTNNDDVRKILAKIDK KQPFEVTQVIKKERKRQAAAPFTTSTMQQEANKRLGYRTHRTMRIAQSLYEGINLGKGSV GLITYMRTDSKRIANVAKQEAADFIKSEFGDAFAAHNPKNFKNDGDAQDAHEAIRPTSAF RTPESIKDYLTPEEYRLYNLIWSRFIASQMNAAIYDTVRADIVQNDVTFRTTGSKLKFAG FTKVYDSNSEKTKIYPN >gi|308164939|gb|AEHO01000032.1| GENE 9 7290 - 8135 713 281 aa, chain - ## HITS:1 COG:BH2468 KEGG:ns NR:ns ## COG: BH2468 COG0758 # Protein_GI_number: 15615031 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Bacillus halodurans # 75 269 81 276 302 189 48.0 7e-48 MNIKELCLRLKLQKKIGYKNMYKILFQLSSEKEITYQLINELNIDFELRGLVLSAFDNEN YSKLIDKICSQCDVITIFDDIYPECLKEIYNPPLVLFARGNLDLLQRRITVIVGSRTPTK YSEQVLQRLIPNIIQDGWVIASGLAKGVDELAHRLTLANHGDTIAVIGNGLNYFYPHQNE GLQQEIFRKGLVLSEYLPDTPPLPFRFPERNRILAGLSENILVTEARKKSGSLITANLGL EANRNIFAVPGPINSNLSEGPNELIAAGAVPVIDYFLDDTI >gi|308164939|gb|AEHO01000032.1| GENE 10 8184 - 8936 703 250 aa, chain - ## HITS:1 COG:SP1156 KEGG:ns NR:ns ## COG: SP1156 COG0164 # Protein_GI_number: 15901021 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Streptococcus pneumoniae TIGR4 # 2 248 3 251 259 227 48.0 2e-59 MTIAEIKKLLSSGDVSTDLLIKLENDSRQGVQRLVKSYKMQKAKKEKAFLEFKTRFSYEK EFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNELFPMILD KAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDLPQLKLIR GDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALKQYGPTPIHR FSFEPVSSYR >gi|308164939|gb|AEHO01000032.1| GENE 11 8933 - 9772 823 279 aa, chain - ## HITS:1 COG:SPy1161 KEGG:ns NR:ns ## COG: SPy1161 COG1161 # Protein_GI_number: 15675137 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 1 277 1 274 282 256 43.0 3e-68 MANIQWYPGHMNKAKNQLEDKLDLIDVIIEVLDARLPMSSKNPMISKLIANKAHIIILNK ADLADAIKTKAWVKFFQKQGILVLPMDAQHSNNMSGLIKLIKIATKDKVDKIIAKGAKEP VIKVAIAGIPNCGKSTIINRLVGRNATIVGDKPGVTRGQNWLKTDTNIQILDTPGILWPK FDDRNIGLKLAACGAIKDSVFHADDVSIFVLKYLREQYLDLLVDFCKTSAEKIEKINDID LLLAMTQLFGMRDDYERFSIFFLQRLRKGKIGRITFDLP >gi|308164939|gb|AEHO01000032.1| GENE 12 9986 - 11161 949 391 aa, chain - ## HITS:1 COG:lin1965 KEGG:ns NR:ns ## COG: lin1965 COG0793 # Protein_GI_number: 16801031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Listeria innocua # 1 360 102 465 496 216 37.0 6e-56 MLNSLSDPYSQKLEGNHLKQINGVLTGNSFGGIGVEMQVFHNKIVICSVLRDTPAFKAHI KVNDELIGVNGKNVDARNFMELSKMIRGKIGTKVTLTLIRNNKKFDVTIVRANIKQSTVS VRQKGSATIIAISQFDVNTAKDLREALKNAKVLHSKKLIIDLRNNPGGIMEQAMTCAAYF VPYGKIIMKYEGRNEHQIIRSNKKLSNNFRTKLKPIIIINQHTASASEIFTAALVDNRCA VTVGQHSFGKGTVQQVGADDNVEYKFTIAKWLTPRGKWINKRGIKPTYETPVSAIENLPK FQTNTLLKYNMMGLDIAILQKYLMALGYLSNNLTGVYDNATLNSVKMFQKDNNLKVTGIV NKDIRYALYVAAYNKFYNDDVTVSKALSIDF >gi|308164939|gb|AEHO01000032.1| GENE 13 11202 - 11369 134 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500647|ref|ZP_05743549.1| ## NR: gi|259500647|ref|ZP_05743549.1| carboxy-terminal processing protease CtpA [Lactobacillus iners DSM 13335] hypothetical protein LineA_04932 [Lactobacillus iners AB-1] carboxy-terminal processing protease CtpA [Lactobacillus iners DSM 13335] # 1 51 1 51 460 97 96.0 2e-19 MKKKLSEYKYLFIVGLIGIFLGCISTYSAMTIYQQKSPLGKINNFYQKIKENILL >gi|308164939|gb|AEHO01000032.1| GENE 14 11374 - 11601 273 75 aa, chain - ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 70 4 68 77 62 53.0 2e-10 MAYHESFYRFLMTLRDHNSTDEVVQFANNAEFDSSFPRQEQDYEKLSEYLELNATYLVSM TIFDRAYQMYQEKMM >gi|308164939|gb|AEHO01000032.1| GENE 15 11610 - 12461 821 283 aa, chain - ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 279 1 274 279 189 40.0 7e-48 MKKIKIVTDSSAQLTIDEINKYDIHIVPLSITFSDKTYTDGVDISREDFVKKMLSADELP KTSQPSIGLFEDVFKDLASDGSHILGIFLTQSLSGTISAAKQAADLLNLGDNITIIDSGL TDRALGLQVLAAAKDLIAGKTLQEIKLHIEAIKKNQHLEMMVSNLDNLIKGGRLGSISGK IATLLNIKLVLQMTDGKLSVYKKGRGKKFFKDFEERVLADIEANKNRISEVGISYVDTPD IAAEIAEKIHLINSDINVLSNITSPIISSHAGSGAIAIIYYTE >gi|308164939|gb|AEHO01000032.1| GENE 16 12587 - 13252 609 221 aa, chain + ## HITS:1 COG:L97827 KEGG:ns NR:ns ## COG: L97827 COG1272 # Protein_GI_number: 15672479 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Lactococcus lactis # 14 221 7 216 217 166 48.0 4e-41 MTFKKLWEEPKNVSTKYFILNNIFSAITHCIGFGLAIAGLVILIIRSASTGNAIRVVSFT IFGTSLVILYLFSTLYHSLVFTKAKRIFQIFDHSSIFILIAGSYTPYALVMIGGFKGWLL FGIIYTLAIIGILFCIFNKGKRPLGEIILYIVMGWTALTFGNTIFPLLGKSGFLLLLSGG LAYTIGALLYTMKRIPYIHVIWHLFVILGSALIYFSILLYV >gi|308164939|gb|AEHO01000032.1| GENE 17 13350 - 14726 1519 458 aa, chain - ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 67 458 1 393 394 315 43.0 1e-85 MVLVFKIDLIMDFEKFVFELFCKKFMNIYHFLSKTNSYYLILPNLALNLVKFNSDYERKS IMNITELPNVFKAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQ IFEKTIDTGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFT INALAMDAEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGFELDL DTKKAIFDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQL SVFSKLNFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLLSY RIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNYLLKQ GIPAGPRIGELLVEIKKAILERKLENNISAIDVFLNNK >gi|308164939|gb|AEHO01000032.1| GENE 18 14650 - 15594 632 314 aa, chain + ## HITS:1 COG:lin2023 KEGG:ns NR:ns ## COG: lin2023 COG1284 # Protein_GI_number: 16801089 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 20 309 1 288 288 241 46.0 1e-63 MNFLQNNSKTNFSKSIIKSILNTKTIKDLFFIALGASIYAFSLDAINIKNQLADGGISGV TLLLRYWFKINPGISTLVLNIPLIIIGYKYMGRRMLILTIWGTSCLSFFLNFWLHTPFIH QINLDHDLFLAGLLTGLLSGLGIGIVFKFGGTTGGTDIIARILELKLGIPIGKTLLGLDV LVLGISLSYLDTKHMLYTLVGSYFLAKIADYVQEGSYAAKGVIIISDKYLNIAKMINLNL DRGYTYLLAEGGYQNDTKKIIYCVVSPRELSNLKSIVLNEDKKAFVSIIDVHETLGEGFT YLRKKNNIFENLKK >gi|308164939|gb|AEHO01000032.1| GENE 19 15660 - 16982 1070 440 aa, chain - ## HITS:1 COG:SPy0902 KEGG:ns NR:ns ## COG: SPy0902 COG0154 # Protein_GI_number: 15674924 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Streptococcus pyogenes M1 GAS # 18 434 62 481 484 280 41.0 4e-75 MDRQLQYLTEDERQKLPPFYGVPTLLKDLTEFWEGTVTSNGCALMRDKVSSRTDAYVQKV LEMGFLPIGRSNVSEFGLKTVADSNAFGAVCLPQDITRNPGGSSGGAAAAVKAGIVPIAM GSDAGGSIRVPAGYTGLIGLKPSRGRIASGPGIYRGFNSLSTQFALAKSVRDVFTMLKNA SVYSPYAMCSLPTIKEEKIQSLTKPLKIAYSVQSLSDEPTSSDAIKAIKSIVSYLKAMGH EVIEDAPAIDIVKLFHFYYTTCLVETGRNLANFKDQSDRVLCKALGDLAWLSYKIGPQIS AYEYSGMLKDQDILIEQNAKFYQNYDLFLTPTTISVAKKQTECALPQTLKNLLSNLQSMS IREQRDVAIQAFDNTYRWTPFTQLMNLTGDPAISLPVYETINGLPIGVQISSLKGNEYRL LQVAKDFEEHGLLKTHIVSL >gi|308164939|gb|AEHO01000032.1| GENE 20 17193 - 18440 1102 415 aa, chain - ## HITS:1 COG:lin2036 KEGG:ns NR:ns ## COG: lin2036 COG0457 # Protein_GI_number: 16801102 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Listeria innocua # 1 412 1 416 417 184 28.0 3e-46 MSYSEKLLDEIQKHNFSNNNILLKKALQNDDNNVLIDLAENLLGFGFTDLAKTVYMHLIK TFPDEGVFKVYLAEILLNDGDEDQGLQLLYDIKPNSSGYIESLLAQADYYQTNGCFDVAE DKLKQALALRKDEPAIIFGCAEINYLKGSYDRAMQYYQELLDQGNKTFGEVAIFQRIMSC LAKMGKYEEAAEIIQNNMDSLLNIDSQYDAGLIMMATSNWKQAIKLFQAVIDSQPDYVNV YPNLAKAYFNIGELNKALDVANAGISYNEYDISLYRIGSKAALSLKDYDQAQQILEKGVD ILSNNDDLKLDLSNLYIITNQDKNNILLLSHDDNQHDPQLIWNLAISYQRTENYQKAKEQ FLLAYPNFKNNADFLRQMALFFHEIGDTHNFKLVLKKYIEMVPEDIEMQDLLTEL >gi|308164939|gb|AEHO01000032.1| GENE 21 18530 - 18805 512 91 aa, chain - ## HITS:1 COG:SA1305 KEGG:ns NR:ns ## COG: SA1305 COG0776 # Protein_GI_number: 15927054 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Staphylococcus aureus N315 # 3 91 2 90 90 104 71.0 3e-23 MANKADLVSLVASNTKLSKKEAADAVDLVFNFVKETLSKDEKVQLIGFGTFEVRERAARK GRNPQTGAEIEIPASKVPAFKPGKALKEAVK >gi|308164939|gb|AEHO01000032.1| GENE 22 18952 - 20259 1637 435 aa, chain - ## HITS:1 COG:lin2051 KEGG:ns NR:ns ## COG: lin2051 COG1160 # Protein_GI_number: 16801117 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 1 435 1 436 436 542 61.0 1e-154 MSLPVVALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGG ITFEDNVIEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINK ADNPEQRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKFDGNNTTDDDNNIRFSII GRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGIRRKGKVYE KVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAVNKWDVPSK TTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRRIQSSVLND LLLDATRITPTPLVNGKRLRIYYMTQVAVVPPTFVVFVNDPELLHFSYKRFLINQMRQNF NFEGTPIKILARKRK >gi|308164939|gb|AEHO01000032.1| GENE 23 20330 - 21517 1710 395 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227520801|ref|ZP_03950850.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03] # 1 395 1 396 398 663 84 0.0 MSDNSNQFLDALKQMQGVEVGSIVEVEVLNVEDGQLTVGVVNEGVEGIIIKREFTADRNA NLQSLVKPGDKFKALVLRKAGGDKENGEFFFSVTRLKEREAYSELEKVYAEGNTVEGVVT GAVRGGLLVDVGTRGFLPASLISNRYVSDLKPYIGKKMNLKITEIDPNKNRLILSRKDLI EEEREEAFESVANQLVVGDTIEGKVSRLTGFGAFINVGGVDGLVHISEISYKHIDKPSDV LKVGQEVKVKVIGIDDDRRRISLSIKQTLPSPFEEATSELHEGDVIDGEVKSLTSFGAFI EVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSDKRISLSIKQTESDNKS NESRPRHEDNVAKKYMSDGDNGFALGDLIGDQLKD >gi|308164939|gb|AEHO01000032.1| GENE 24 21545 - 22243 677 232 aa, chain - ## HITS:1 COG:SPy0803 KEGG:ns NR:ns ## COG: SPy0803 COG0283 # Protein_GI_number: 15674845 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Streptococcus pyogenes M1 GAS # 1 218 4 222 226 211 54.0 6e-55 MQVAIDGPASAGKSTVAKIIAKNMGYIYLDTGAMYRACTLVAKQNHLAYDDQSGILKALN NNIISFKNIDDDQRVYINDKDVSFDIRTPEITANVSQVSALSEIRKKMVEIQRKIAGENN IIMDGRDIGTTVLPDADVKIFLIASVASRAKRRYLDFKEKGINQNLTDIEKDIADRDYKD MHRKISPLRKAEDAYQVDTTDMSIDQVVNKLTQIIKKIKKINKSVEKTFVFL >gi|308164939|gb|AEHO01000032.1| GENE 25 22331 - 22924 237 197 aa, chain - ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 13 196 6 185 203 89 32.0 5e-18 MRRYQKVNNINELKMLLLSMMLGVFSFIVMQISIPIIPGASFLKLDCSDIIIMISFFVFN PIVGSTVAIVRGILCLIIGGFNLIALLGQIAALVASLCYIFPIYFWSKNKMYMLKYKIIG ILLGTCGLTISMSIINYYVLLPLYMQLVNFKINDLMAYILFLIAPFNLIKGIINGILFLI LSNKIIPTLQKFIEKNC >gi|308164939|gb|AEHO01000032.1| GENE 26 23192 - 23653 533 153 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309807108|ref|ZP_07701087.1| ## NR: gi|309807108|ref|ZP_07701087.1| hypothetical protein HMPREF9212_0782 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9212_0782 [Lactobacillus iners LactinV 03V1-b] # 18 140 35 157 170 101 94.0 2e-20 MMMMQIRTIRLVTIHLMKKVNDSSTTTASNNTQNSSHNNNSSTASTKTTHVNQHKGVSAK ASHSKAATSKAKVEHKVDKGSEKGKENGSKKDEKPKSNEKADKGSEKGKENGSKKDDKAK DDKKSNANDKKSDSAKSSNTEKESKEKSSENKK >gi|308164939|gb|AEHO01000032.1| GENE 27 23589 - 23972 268 127 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804145|ref|ZP_07698223.1| ## NR: gi|309804145|ref|ZP_07698223.1| hypothetical protein HMPREF9214_0671 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9214_0671 [Lactobacillus iners LactinV 11V1-d] # 1 104 1 104 156 166 95.0 5e-40 MNKDSEEPIKHYEIPSTPRGSVQKTSSAGNPKRRIRSVPSSTVAKRKSKRRSILVLATLV LLFLVCVPLVIAHFTSRSDNDSQKSELVHDRDSKDSHKRKNNEKKSDDDDADKDDSSSDD SSNEKSK >gi|308164939|gb|AEHO01000032.1| GENE 28 24039 - 24758 790 239 aa, chain - ## HITS:1 COG:lin2063 KEGG:ns NR:ns ## COG: lin2063 COG1187 # Protein_GI_number: 16801129 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 4 235 3 234 244 265 59.0 5e-71 MKLRLQKVIAEAGIASRRKAEILITSGQVTVNGNLVTTLGTKVDDNDKIEVNGVPIHKEQ LHTYLLYKPRNVVSTVSDNKGRKTVTDFFKDLPYRLYPVGRLDYDTSGLLLMTNDGELAN RLMHPKNEIEKVYVAKIRGFLTASEIYDLKHGVTIDGRKTAPAKVKIIKTDKNRNIQLVQ LTIHEGHYHQVKNMFKAVNHLVEKLSRERYAFLTLKSLISGEYRELTHEEINKLKHSEN >gi|308164939|gb|AEHO01000032.1| GENE 29 24777 - 25343 560 188 aa, chain - ## HITS:1 COG:SP1875 KEGG:ns NR:ns ## COG: SP1875 COG1386 # Protein_GI_number: 15901703 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pneumoniae TIGR4 # 1 182 1 179 189 152 45.0 3e-37 MSKEAQLEAILYLAGDEGITEDQLSQLLDIPALQLHEIIKKTKDKLEDDHDCGLSILRVN DVIKLVTKNSCSDIVGKYFQKDLNKNLSQSALEVLSIVAYRQPITRIEIDDIRGVNSAGA IQTLIWRGLVEISGKKEVAGHPNLYVTTEYFLQYFGYQSLDDLPLIESFSDSVIDSQQVE LFNNSDDI >gi|308164939|gb|AEHO01000032.1| GENE 30 25345 - 26076 655 243 aa, chain - ## HITS:1 COG:lin2065 KEGG:ns NR:ns ## COG: lin2065 COG1354 # Protein_GI_number: 16801131 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 239 4 242 249 129 36.0 4e-30 MIDDTNLNLELPNFSGPLDLLLHLIKSQKIDIYDIPIAKITSQYLAYLSKWQTLDLKIAG EYFVMASSLLKIKSQYLLPKNDFDNEIIEDDDPREELVEQLVQYSIFKKISEFLDERQKS APITVAKEPSVASQKKVSLLPFGEISSKQLARAFFVVLQRFQHKNNVGEVNIKEVSIEDM VLWLSSKLHSAHKLSFFELSAELTTVDELISLFLAILELCRNQKIKVYQESDFEDLVIES LVA >gi|308164939|gb|AEHO01000032.1| GENE 31 26073 - 26474 354 133 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0885 NR:ns ## KEGG: LGAS_0885 # Name: not_defined # Def: riboflavin biosynthesis acetyltransferase RibT # Organism: L.gasseri # Pathway: not_defined # 15 133 1 118 120 96 41.0 3e-19 MFINVHILVFKVVAMLYKYKNNYEKIVMGYLSYFDEFKILKNLLAEIKLYNESDIYTVYL YRSKPTVDFQGVVCVQVEAEFVVIRYVSINPSYDREKIIERIMKELHELYPNRLLCTMPD YAYLMKYIEESDT >gi|308164939|gb|AEHO01000032.1| GENE 32 26443 - 26973 471 176 aa, chain - ## HITS:1 COG:BS_ripX KEGG:ns NR:ns ## COG: BS_ripX COG4974 # Protein_GI_number: 16079408 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 2 175 124 295 296 181 52.0 7e-46 MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISN VAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVT PHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI >gi|308164939|gb|AEHO01000032.1| GENE 33 27003 - 27332 345 109 aa, chain - ## HITS:1 COG:SA1328 KEGG:ns NR:ns ## COG: SA1328 COG4974 # Protein_GI_number: 15927078 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Staphylococcus aureus N315 # 1 104 1 105 295 77 38.0 5e-15 MNDSLEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQER DKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKKKGYLLL >gi|308164939|gb|AEHO01000032.1| GENE 34 27325 - 28206 462 293 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 1 274 1 270 285 182 38 3e-45 MLGKIVSGKVIDKNTNAFFVQVSGVTFELNNVELTQEEPLKLGDIVKGFVYENKNHKHVM TQFYPFAQEDQYGWSTVTEVRKDLGVFLDIGLKDKDVALSLDDLPLDKSRWPKKGDRLLV RLETDHKDRIWAKLADGDVFTQLAANYPNNLMNKELTGTVYLTYEIGAFLITTDFYLAFI HESQSYRPLRLGEQVTGRVIGNSQYGRLNMSVLPRNYEEIDDDAQMILVSLNRESTKSLP FCDRSDANLIKQHFGISKSAFKRALGHLLKEKLITVDNDAGVISLFDKVENDE >gi|308164939|gb|AEHO01000032.1| GENE 35 28321 - 30090 2193 589 aa, chain - ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 479 1 475 475 530 59.0 1e-150 MKKTKIVSTLGPASNDIETITKLAEAGANIFRFNFSHGDHPEHAERMRMVREIEKKTGLL LGVLLDTKGAEIRTTDQEGGKFIINTGDKIRISMDATKVGNKDKIHVTYPGLYSDTKVGG HVLIDDGLVDLLILEKDEANQELVCEAQNTGKIGSKKGVNAPGVEIRLPGITEKDTDDIK FGLTQGINFIAASFVRKAQDVLDIRQLLEEGHCEYVKIFPKIESQEGIDNIDEILKVSDG LMIARGDMGVEIPFINVPFVQKELIKKCNRLGKPVITATQMLDSMQEHPRPTRAEVTDVA NAVLDGTDATMLSGESANGLYPVNSVKAMADIDMRTEKQLAERNSLALQRFEEYQGSNVT EAIGESVVRTAEELGVKTIIAATESGYTARMISKYRPNADIIAMTFDEKTQHSLGVVWGV KPMLVEKPKTTEEMFDKAAELAKESGLAKDGDLVIIVAGVPLGQTGTTNLMKLQLIGTQL VKGLGVGEQSVIGSAVVVDSAEDANNKVQEGDILVAKTTNKDYLPAIKKASALVVEASGL TSHAAVVGLSLGIPVVVGATDAVSKVKDGSKITVDARRGAVYLGEASNI >gi|308164939|gb|AEHO01000032.1| GENE 36 30128 - 31087 1102 319 aa, chain - ## HITS:1 COG:SP0896 KEGG:ns NR:ns ## COG: SP0896 COG0205 # Protein_GI_number: 15900779 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Streptococcus pneumoniae TIGR4 # 1 318 1 335 335 377 60.0 1e-104 MKRIGILTSGGDAPGMNAAVRAVTRTALANGVEVFGIRYGYAGLVAGDIFQMTSATVADK IERGGTFLYSARFPEFAQKEVQLKGIEQLKKHGIEALVVIGGDGSYHGALRLTEHGYNAI GLPGSIDNDIPYTDYTIGFDTACNTAMEAIDKIRDTATSHQRVFVVNVMGRDCGDIALHV GVATGADAIVVPEEEYDIKEIAETLKQGFANGKKHGLVVVAEGVMNAEDFKNELLKYGDF DARANVLAHMQRGGNPTVRDRVLSSKMGAYAVKLLLDGKGGLAVGIENNKLIAHSILDLF DAKHQGDYSLYSLNKDMAK >gi|308164939|gb|AEHO01000032.1| GENE 37 31226 - 32332 927 368 aa, chain - ## HITS:1 COG:BB0579 KEGG:ns NR:ns ## COG: BB0579 COG0587 # Protein_GI_number: 15594924 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Borrelia burgdorferi # 1 366 693 1074 1161 174 34.0 4e-43 MKTAQIYAGFSLGEADLLRRAISSKDSMEMKKIGVDFVNRAVQQGHSAAAASSIFEYILK FSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVALLNSNIYDKQKVTKYIMDLKMDNIK ITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDFVEQIMNLQRPIKSLTDFLWKIDTKY LSPDMIGNLIKSGAFDKLHKNRSALLASYEDLLICIKMSGGNNVLFQALEPKELDIKMPS NAQKEEWETSVLGFSPQIDPILAAQIYAKKYGFKPFSDFTFYDEGVSVGKMMDIKVITTK NNKKMAFAKFNDLHETVDFVIFPAVYESIKSILSVGKVYLLKIETQTDKFNANKFKFILL SVKQIDLK >gi|308164939|gb|AEHO01000032.1| GENE 38 32371 - 34347 1474 658 aa, chain - ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 654 1 639 1108 471 41.0 1e-132 MEIAGLQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIK PLLGMQLRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVTLNKLQ KYLGNLHIITTANQHSELRDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADKSESNYI NSVKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKHVGNHYLK TKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFDTSYEFLHHLAMT GLQAKFNKHDIPAKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSIGILTGPGRGSAA GSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNRRNEVVLYMFHKYGMDH VAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKITLSDAYKLSKDFRMLV NATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSLGIPVTQQTKKYV EALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDPATIKLFQKGKTDDIFQF ESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKIRKKRWYIQIPYLLIY >gi|308164939|gb|AEHO01000032.1| GENE 39 34434 - 34757 296 107 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0879 NR:ns ## KEGG: LGAS_0879 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 14 91 14 93 107 75 52.0 6e-13 MRSLKQNSHFTCINLKDIVNLFLIKNIIFVKIRTEEGIFMRYIITTVWAVIFVEIIGFIG SKLTQMAFNPCESALIGAAFGLLFTAIIPTVAIIKKNDSKNASDVVK >gi|308164939|gb|AEHO01000032.1| GENE 40 34860 - 35051 289 63 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519001|ref|NP_964931.1| 50S ribosomal protein L32 [Lactobacillus johnsonii NCC 533] # 1 63 1 63 63 115 84 4e-25 MAVPARKTSKQKKRSRRGHIKLSVPAMHYDATTGEYRLGHRVSPKGFYKGKQVLNETKKE DNE >gi|308164939|gb|AEHO01000032.1| GENE 41 35175 - 35969 168 264 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 10 250 7 240 259 69 28 4e-11 MEKTLDNKVVAITGASSGIGKSIALECAKNGATLILISRSVEKLNSVAKAVQSLSQAPVY VYATDVSKVDQIDMTVDRIKHVVGRVDYLVNAAGFGIFEDFMHMDINTCEDMFRTNVIGL MYLTRLLAGMMIDQRNGQVINFGSLAGKIPTVKSAVYSATKAAVIQFSNVLRLELKPFNV KVLTVNCGPVKTNFFNIADKSGNYLSNVDRFMLNSDYVAKRVVKLFGCSVRELNLPFSLA ALAKLYQLCPTLGDWASIKFASKK >gi|308164939|gb|AEHO01000032.1| GENE 42 35974 - 36900 1167 308 aa, chain - ## HITS:1 COG:L18686 KEGG:ns NR:ns ## COG: L18686 COG1234 # Protein_GI_number: 15672612 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Lactococcus lactis # 1 305 1 305 307 324 55.0 1e-88 MEIQFLGTGAGQPSKGRNVSSTALKLLDELNEIWLFDVGEATQHQILETNIKPRKITKIF ISHNHGDHIFGLPGLLSSRSFQGDSGGLTIYGPAGIEQFVQISLKVSKTKITYPIKYVIL KDDGIIFEDKQFAVFTAKLDHRIESYGFRVVEKPRPGELQMDKLKQYNLPNGPILGRLKA GETVEYNGHVLNGKDFLGKPRLGRIVSIIYDTRPTNVIGQLAEDADVLIHESTFSGIDSK MAHRYYHSTCVDAATVALQHNVRRLFLTHISARYIGKNSRILEKEAQKIFSNTKLANDFD SYEIKARD >gi|308164939|gb|AEHO01000032.1| GENE 43 36907 - 38829 1194 640 aa, chain - ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 6 634 3 600 605 358 36.0 1e-98 MKNKNRFITGYSGLRSLAVIGVILYHLNPNVFIGGYLGVLIFFVLSGYLVTDHMLFSYQT YGRYSNRLFYLKRIKKLYPQLISVLWISGAYILIFQRDILSKFNEIVLANLFNVYNIWQI FNGQSYFERFASNESPFVHLWTMSILGQFYLLWPIIMYILVYKLRTKKELFITISVLTIL SAMEMALLYKPGVDTSRIYYGTDTRFFALGIGALLAIVCPTNRLRIGIKKNNTILLDSLG AVSFIGMFILATNQCMNPMQAFPYMGGMFIFSILTAIMVAIIANPHSHWNLVLTNPIFNW IGSRSYGIYLYQFPIMIFFESQAKNLAYNVFFYRVSEIILILLISELSYRLIEKPFGSLK WNQVHDFTRKILTINKRYLSQKLVTMVGLIVFVLGTIAIFTAPTVKAKNADNSPLARQIK KNRREQLEDNKKIIAKAKSNKVKLAGKEKIVNWAKRRMKANIVNKDFERYGISQLDLQLA QKLCVTAIGDSVMAGSSQNLKKMIPSSLVDATVSRQLVPTINLFEKYKQNGALYPNVLIG LGTNGPFKMSDVDNLMRILGDKRRVFWVNVYVPSRSWQQPVNQLLYQAEKKYKNLYIINW NGFAKNHSKLLYADHTHPNVEGSKYYSVMITKYLVEHGKF >gi|308164939|gb|AEHO01000032.1| GENE 44 38846 - 40129 1687 427 aa, chain - ## HITS:1 COG:lin1572 KEGG:ns NR:ns ## COG: lin1572 COG0536 # Protein_GI_number: 16800640 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 1 427 1 429 429 418 53.0 1e-116 MFVDQTKIEVQAGNGGDGAVAFRHEKYAPLGGPAGGDGGRGGSIYLVADSGLRTLMDFRF RRKFKAENGENGRIKSQYGRGAKDVFLKVPMGTAVYDFYTNELLGDLVGNGQKLRVACGG RGGRGNIHFATSTRTAPEIAENGEPGEFRTLRLELKVLADVGLVGFPSVGKSTLLSVVTK AKPKIAAYEFTTLTPNLGMVVLDDGRDFSMADLPGLIKGASQGVGLGIQFLRHVERTKVI LHLISMDPNNGRDAYEDYLTIRQELAGYTNDLTKKTEIVVASQMDIPGSEEKLQELKKKL NDKIIYPISSITHKGVRDLMIKAADIVYAANDQAETAQVVADKGEQEYVYKKLDDSFVVE KVDEHYFVISGDKLERLVQRINLDHTDGVMMLARKLKRMGIDDALREKGAQNGDEVTIGN FTFEFVE >gi|308164939|gb|AEHO01000032.1| GENE 45 40217 - 41224 894 335 aa, chain - ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 14 326 282 586 603 308 50.0 1e-83 MRRETKIFNLTDIDKAKDEFESFIVQFYNAKNRLFPNEILVPKGVNASSLAAVLKVRVKT PSRGQKKALLDMAYENSKIKLDEKIRLLELNNLKTKGAQEEIFNALGLPYGSRIESFDHS HIQGTDPVSALVVFIDGMPAKHEYRKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH LVLPNLILMDGGKIQVDACLDVLRNELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRT IPLDSKSQAFYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPRSRNKLLKNFG SLKKIREASIEDLKGIGLTLTQAQSVKLVLENSQN >gi|308164939|gb|AEHO01000032.1| GENE 46 41320 - 42033 536 237 aa, chain - ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 1 237 1 237 603 268 54.0 8e-72 MANQNIENKLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRRAELVRD INDFEIIVVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITNERDPEVKLTSIIK KDKGYYFGPYPNVYAAQATLKFIQKMWPLRRCSGKLGRPCLYYNMGQCLGSCFKEVSSDK YDHQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQK >gi|308164939|gb|AEHO01000032.1| GENE 47 42160 - 43089 860 309 aa, chain + ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 2 308 3 311 313 244 40.0 1e-64 MKNIYFNHDGNIDDLVSLLILLQTPDIKLIGVSAIDADGYIEPSVDACRKMIDLFNLRND NLEVAKSTSRAVHQFPNEWRMATYSFNYFPMLNESGTIKTPIAKLPAHLDMVDKIKKADD MVDLVMTGPITDLARALKADPSIQEKINKVYWMGGSLNGHGNVMSVDADGTQEWNAFWDS QSVATVLESDLNIQMVGLESTEELPLTDELRMHWAKMRKFPAIDLIGLGYSLIVSIPGAE LYLWDVLTTMSALYPEVVTSSIEAKAKIITSGLADGRMYTADDGKKLTLVTSANKELFFQ KMDEILKRS >gi|308164939|gb|AEHO01000032.1| GENE 48 43101 - 43217 130 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLTMKSNNELEKLFNKFAILPDDKDKKKNSKNKDNKK >gi|308164939|gb|AEHO01000032.1| GENE 49 43281 - 43658 442 125 aa, chain - ## HITS:1 COG:no KEGG:LJ1063 NR:ns ## KEGG: LJ1063 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 2 124 3 124 126 110 48.0 2e-23 MDNELNEMKAQSVAWLKNNLNFYRMDSQTIEVETPLIDSFGQNIYCFIIKKDEYYLISDG GWFLFKLDPDMSDSDFYNQAVDIIIGTGFEIDEETGEFFMEVSIDELPLALNQLAQLQVA LSYLK >gi|308164939|gb|AEHO01000032.1| GENE 50 43695 - 44009 432 104 aa, chain - ## HITS:1 COG:lin2362 KEGG:ns NR:ns ## COG: lin2362 COG2151 # Protein_GI_number: 16801425 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Listeria innocua # 7 103 5 101 102 112 55.0 2e-25 MRDINIIKDEIVAQLAKVIDPELNIDIVNLGLVYAIDLDEDGICLVQMMLTTMGCPLADV LAKMVIKQLKNIPEIKNVDVRFIWEPAWTPDRLSREAKMILGVH >gi|308164939|gb|AEHO01000032.1| GENE 51 44011 - 44892 1179 293 aa, chain - ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 290 1 290 299 295 59.0 9e-80 MYDSISEIVANSLSTKKPISELIIEQECTLSGLTRDAVFEKMKCNLEVMLASVERGIQGQ GVFSKTGLTGGEAVKVKKYRKLNKSLSGDDMMIAVEAAMATNEVNAAMGVVCATPTAGSS GTLPGVLYLLKKKLNLNQEQMLRFLFTAGGLGLVIANHSGIAGATGGCQAEVGSASAMGA AAAVEVAGGSAEQSAQALAIAISNLLGLVCDPIAGLVEVPCVKRNAIGTTNALISADLAL AGCTSLIPPDECIQAMSNVGKLMPEELRETGLGGLASTATGQAIKAKIFGKDV >gi|308164939|gb|AEHO01000032.1| GENE 52 44912 - 45529 703 205 aa, chain - ## HITS:1 COG:BH2497 KEGG:ns NR:ns ## COG: BH2497 COG1760 # Protein_GI_number: 15615060 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus halodurans # 1 141 14 150 220 132 45.0 6e-31 MIGPSSSHTAGAVAIGQAGNKLFGGIPKKVTVYYYGSFAQTHRGHGTDYAIAAGIMGLAA DDYRVPNAIKLARKRGIDIRFVEEEGDSPIGHPNTALLDLKTDDHRVKLIGCSIGGGTIE IRGIEISGIKMDIAGPLPIIIYKIPSNKLYCATELMNYLNKVAPYNKQQSFNGTGFVLYE FDIINYISPKIVNSLHKKYPGIICL >gi|308164939|gb|AEHO01000032.1| GENE 53 45655 - 46173 394 172 aa, chain - ## HITS:1 COG:no KEGG:LBA0863 NR:ns ## KEGG: LBA0863 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 21 168 20 167 171 110 48.0 2e-23 MKIFNIILGAILIIIFLVSLFRNKNHFIFFKALFLFLALIIGSTINFIIFLLLEYNFLNI DNGLKAGNLFILLGLMIIMSGLILYLYLLLLNWIFPLNSTILSIIEYYIQWTLIYVTIYQ VIFENLKKVQDIDIYIKVGNLLNPDVFVVMILPSFISAWIAVILLKKHNNQL >gi|308164939|gb|AEHO01000032.1| GENE 54 46245 - 46832 668 195 aa, chain - ## HITS:1 COG:BS_ysxC KEGG:ns NR:ns ## COG: BS_ysxC COG0218 # Protein_GI_number: 16079871 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus subtilis # 1 194 1 193 195 199 52.0 2e-51 MKVNNSKFVISAVSDKQYPQDDLPEIALSGRSNVGKSSLINAVLNRRNLARTSQQPGKTQ TLNFYLVNTDLYFVDVPGYGYAKVSKEQRQKFGEMIQDYLETRADLKGLVLLVDARHDPT VDDINMFNYALCLNIPILVVATKIDKLKKSAIGQLESKIGLSLDLTQSQVTFLPFSSETK INIDKFWQWIENSIK >gi|308164939|gb|AEHO01000032.1| GENE 55 46822 - 48111 275 429 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 157 412 258 459 466 110 31 2e-23 MSTNRRGDNEEIRCSFCGKLQSQVSKIIAGQDVYICNECIDISKKLVDEELKLDSVNEIK DIPKPIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGP TGSGKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDINRAQRGI IYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKIDT TNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIPEF IGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEFSTDALNAIATMALN KNMGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESVITKASYPIIVFEDRQTNNDLET DEGELIDEG >gi|308164939|gb|AEHO01000032.1| GENE 56 48219 - 49547 1939 442 aa, chain - ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 424 427 393 53.0 1e-109 MSAKWEKTGKTTGELTFEISTEEISKGLDIAFKRVKKNLRVPGFRKGHVSRVVFDQFYGE EALYEDAVNAVLPVAYANAIAESKAEVVGQPKIMPVSMEKGKAWTFKAIVSTKPEVKLGD YKGVEVPKQNKRVLVKDVDAELKKRQEQNAELVLKDGKSAEGDTVTIDYEGTVDGTKFEG GSAKNYSLELGSKTFIPGFEDQLLNHTAGDGVDVVVTFPEDYSAKDLAGKEAHFATKIHE VKSKHLPKIDDEFAKDIDDSVESLDELKEKIKADLKKQKEEAAEDAIQEAAVKEAVNNAS VDEIPEAMINEDVDNQLKQYLGGMQRQGIDPKTYFKLTGTTEEQLRQQLATDAPERVKTN LVLEAIVSAENIEVTAEEINQEIKNLATDYNMDEKVVRRTLSDDMLKHDISIRKAINLVV DNAKEVAKKSSTKTATSEDSDK >gi|308164939|gb|AEHO01000032.1| GENE 57 49674 - 50864 1374 396 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 4 396 3 407 407 533 65 1e-151 MAEKEHYVRTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGLAEAKDYAGIDAAPEEKER GITINTAHVEYETEKRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREH ILLARQVGVNYIVVFLNKVDLVDDPELIDLVEMEVRDLLSEYGYPGDDVPVIRGSALKAL QGDPEQEAVIKKLMDTVDEYIPTPVRDTDKPFLMPVEDVFTITGRGTVASGRIDRGTVKI GDEVEIVGLTDKVEKSTVTGLEMFRKTLDLGEAGDNVGVLLRGIDRDQIERGQVLAKPGS IQTHKQFKGQVYILNKDEGGRHTPFFSDYRPQFYFHTTDVTGKIELPEGTEMVMPGDNVE FTVELIKPVAIEKGTKFTIREGGRTVGAGQVTDIVD >gi|308164939|gb|AEHO01000032.1| GENE 58 51034 - 51288 185 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309807951|ref|ZP_07701879.1| ## NR: gi|309807951|ref|ZP_07701879.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9210_0886 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9210_0886 [Lactobacillus iners SPIN 1401G] # 1 84 206 289 289 160 100.0 3e-38 ISFLKHHYENNPSKMNLLVNEITIFCEVIFPCIEFYIIDADKFARCFIDYINGESDNINE YTKLLNDVYAELYRFNYNYKIKNN Prediction of potential genes in microbial genomes Time: Wed Jul 13 03:07:10 2011 Seq name: gi|308164938|gb|AEHO01000033.1| Lactobacillus iners LactinV 09V1-c contig00115, whole genome shotgun sequence Length of sequence - 3187 bp Number of predicted genes - 2, with homology - 0 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 85 - 121 0.4 1 1 Tu 1 . - CDS 141 - 308 103 ## - Prom 553 - 612 80.3 + LSU_RRNA 432 - 1593 94.0 # AE017198 [R:1879440..1882488] # 23S ribosomal RNA # Lactobacillus johnsonii NCC 533 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + LSU_RRNA 1660 - 3010 95.0 # AE017198 [R:1879440..1882488] # 23S ribosomal RNA # Lactobacillus johnsonii NCC 533 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. 2 2 Tu 1 . - CDS 3040 - 3186 67 ## + 5S_RRNA 3070 - 3175 95.0 # CP000413 [D:482332..482450] # 5S ribosomal RNA # Lactobacillus gasseri ATCC 33323 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Predicted protein(s) >gi|308164938|gb|AEHO01000033.1| GENE 1 141 - 308 103 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFQFTASSSLMLSIHIQGDTSRCRVPPFGYLRISAYLPLPEAFRRLSRPSSASSA >gi|308164938|gb|AEHO01000033.1| GENE 2 3040 - 3186 67 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no HGNVLPSQAVSHQLLSALRTLTSVFDMGTGVSFLLSPPYSSLSFYTQN Prediction of potential genes in microbial genomes Time: Wed Jul 13 03:07:20 2011 Seq name: gi|308164936|gb|AEHO01000034.1| Lactobacillus iners LactinV 09V1-c contig00033, whole genome shotgun sequence Length of sequence - 1610 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1608 2097 ## HMPREF9243_0633 LPXTG-motif cell wall anchor domain protein Predicted protein(s) >gi|308164936|gb|AEHO01000034.1| GENE 1 3 - 1608 2097 535 aa, chain + ## HITS:1 COG:no KEGG:HMPREF9243_0633 NR:ns ## KEGG: HMPREF9243_0633 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: A.urinae # Pathway: not_defined # 1 242 2688 2902 3278 78 35.0 9e-13 DGKTPHIKVSDKVNGETTITIDGYNDDGTAYRQEVKVSDGITYAPVATKGEDGVTTIKFY PVDPKTGKPDKTKQPVGSDVQVKDGVNGKDGKSVTSAYVDAKTGHLMITIEGQANPIDAG LVKGLSAKVDIKRNEENTGVDITVTQEKWDNNGNLTKETTTNTVYDGVGPKIEVAEQGNS HIITITDQIRDREGIKEKPNAKPQVIEVKDGKDGETPTITKGEGKDENGHVFTTVTFTTS KGSTTVVIPNGKDGRDGKDCQGTCGICDNRDFKPVKFDARYEDGADLGRIQLRFIPVELG DRPSNVTAAVKHTRSRRSLGDQEVANAGLLNLMATSVLVGSDREAVDYPAEDKTVQGPIA NTYKVEGLLDGMVFNPEDATITGKAKITDWKDGETKRRVPIRVTVYNSDGSTKVAESDIV VTRTITSKPSVQGTSTPDTSIPNPGKSMSYVGVVPGTRPYYTLKMIGRPLPKGIKFDSTT GIFTGTAKVDDWQDGEVSRIYPFVVTVVNCDGKQYKAEDSITIYRKINPEPAPVP Prediction of potential genes in microbial genomes Time: Wed Jul 13 03:07:45 2011 Seq name: gi|308164868|gb|AEHO01000035.1| Lactobacillus iners LactinV 09V1-c contig00006, whole genome shotgun sequence Length of sequence - 68193 bp Number of predicted genes - 67, with homology - 65 Number of transcription units - 38, operones - 16 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 7 - 2694 2254 ## COG0474 Cation transport ATPase - Prom 2769 - 2828 3.9 2 2 Op 1 . - CDS 3026 - 3595 282 ## LGAS_0203 beta-propeller domain-containing protein 3 2 Op 2 . - CDS 3592 - 4065 615 ## COG2131 Deoxycytidylate deaminase 4 2 Op 3 . - CDS 4087 - 5106 1205 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 5275 - 5334 74.3 + TRNA 5258 - 5328 55.9 # Gly CCC 0 0 - Term 5236 - 5297 7.4 5 3 Tu 1 . - CDS 5360 - 6031 369 ## LGAS_0198 hypothetical protein + Prom 5905 - 5964 10.3 6 4 Tu 1 . + CDS 6145 - 6459 283 ## gi|309805792|ref|ZP_07699829.1| PTS system, Lactose/Cellobiose specific IIB subunit + Term 6468 - 6519 1.6 - Term 6634 - 6673 8.1 7 5 Tu 1 . - CDS 6773 - 7819 997 ## COG0515 Serine/threonine protein kinase - Prom 7847 - 7906 6.8 8 6 Op 1 . - CDS 8070 - 8378 361 ## Ldb0333 hypothetical protein 9 6 Op 2 . - CDS 8403 - 8645 375 ## Ldb0332 hypothetical protein - Prom 8721 - 8780 13.9 + Prom 8691 - 8750 10.4 10 7 Op 1 45/0.000 + CDS 8777 - 9304 200 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 9348 - 9407 4.3 11 7 Op 2 . + CDS 9478 - 10278 711 ## COG0842 ABC-type multidrug transport system, permease component + Term 10283 - 10318 5.3 - Term 10262 - 10314 11.1 12 8 Tu 1 . - CDS 10371 - 10832 523 ## COG0782 Transcription elongation factor - Prom 10869 - 10928 8.8 + Prom 10788 - 10847 9.7 13 9 Op 1 . + CDS 10995 - 11162 155 ## gi|315654051|ref|ZP_07906967.1| membrane protein 14 9 Op 2 . + CDS 11168 - 11467 297 ## gi|309809141|ref|ZP_07703014.1| conserved domain protein 15 9 Op 3 . + CDS 11448 - 12875 910 ## COG3428 Predicted membrane protein 16 9 Op 4 . + CDS 12945 - 14255 1721 ## COG3579 Aminopeptidase C + Term 14264 - 14318 4.2 - Term 14310 - 14366 10.2 17 10 Op 1 . - CDS 14399 - 16348 2057 ## COG3590 Predicted metalloendopeptidase - Prom 16376 - 16435 5.9 18 10 Op 2 . - CDS 16463 - 17683 1126 ## COG0477 Permeases of the major facilitator superfamily - Prom 17720 - 17779 5.8 - Term 17740 - 17785 4.1 19 11 Op 1 12/0.000 - CDS 17786 - 18499 563 ## COG0602 Organic radical activating enzymes 20 11 Op 2 . - CDS 18524 - 20713 1918 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 20869 - 20928 8.3 - Term 20863 - 20907 6.9 21 12 Tu 1 . - CDS 20936 - 21253 265 ## gi|312874798|ref|ZP_07734817.1| conserved domain protein - Prom 21370 - 21429 11.6 - Term 21376 - 21408 1.4 22 13 Op 1 4/0.000 - CDS 21433 - 22146 953 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 23 13 Op 2 5/0.000 - CDS 22165 - 24000 2446 ## COG0578 Glycerol-3-phosphate dehydrogenase 24 13 Op 3 . - CDS 24003 - 25523 1460 ## COG0554 Glycerol kinase - Prom 25556 - 25615 7.3 - Term 25578 - 25625 4.1 25 14 Op 1 . - CDS 25651 - 27066 940 ## SSA_1825 hypothetical protein 26 14 Op 2 . - CDS 27060 - 28376 1080 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 28424 - 28483 6.4 - Term 28486 - 28539 13.2 27 15 Op 1 1/0.000 - CDS 28569 - 29780 1025 ## COG3919 Predicted ATP-grasp enzyme 28 15 Op 2 . - CDS 29852 - 31801 1847 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 29 15 Op 3 . - CDS 31867 - 33258 1163 ## LGAS_0134 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase - Term 33275 - 33301 -0.6 30 15 Op 4 . - CDS 33311 - 33793 625 ## LJ0133 hypothetical protein - Prom 33814 - 33873 6.0 - Term 33819 - 33859 2.2 31 16 Tu 1 . - CDS 33879 - 34355 530 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 32 17 Tu 1 . + CDS 34799 - 35302 349 ## COG2365 Protein tyrosine/serine phosphatase + Term 35357 - 35399 8.2 + Prom 35389 - 35448 10.0 33 18 Op 1 . + CDS 35491 - 36411 794 ## COG4586 ABC-type uncharacterized transport system, ATPase component 34 18 Op 2 . + CDS 36417 - 37160 563 ## Ldb0155 ABC transporter, permease protein 35 18 Op 3 . + CDS 37157 - 37930 486 ## COG3694 ABC-type uncharacterized transport system, permease component 36 18 Op 4 . + CDS 37962 - 38111 138 ## + Prom 38125 - 38184 6.9 37 19 Tu 1 . + CDS 38212 - 39393 924 ## Ldb0158 hypothetical protein + Prom 39395 - 39454 8.0 38 20 Tu 1 . + CDS 39596 - 39967 109 ## LBA1932 hypothetical protein 39 21 Tu 1 . - CDS 40077 - 41654 1062 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 41785 - 41844 8.5 - Term 41825 - 41869 4.4 40 22 Op 1 3/0.000 - CDS 41962 - 42360 403 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 42386 - 42445 5.1 41 22 Op 2 . - CDS 42453 - 43535 1256 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase - Prom 43771 - 43830 7.6 + Prom 43610 - 43669 6.6 42 23 Tu 1 . + CDS 43702 - 46656 2051 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases + Term 46681 - 46734 8.3 - Term 46669 - 46722 14.6 43 24 Op 1 3/0.000 - CDS 46739 - 47488 666 ## COG5438 Predicted multitransmembrane protein 44 24 Op 2 . - CDS 47500 - 48585 680 ## COG5438 Predicted multitransmembrane protein 45 24 Op 3 . - CDS 48605 - 49273 589 ## lhv_0144 hypothetical protein 46 24 Op 4 . - CDS 49298 - 50380 1136 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes - Prom 50541 - 50600 12.6 + Prom 50346 - 50405 8.2 47 25 Tu 1 . + CDS 50613 - 52052 1102 ## LGAS_0106 hypothetical protein + Term 52117 - 52159 8.0 - Term 52105 - 52145 -0.0 48 26 Tu 1 . - CDS 52254 - 53024 491 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 53099 - 53158 3.6 - Term 53339 - 53373 2.0 49 27 Tu 1 . - CDS 53545 - 54408 935 ## COG1396 Predicted transcriptional regulators - Prom 54505 - 54564 8.2 - Term 54658 - 54705 2.2 50 28 Op 1 . - CDS 54796 - 55467 645 ## LSL_1382 hypothetical protein 51 28 Op 2 . - CDS 55460 - 56200 286 ## LKI_03870 putative transporter, trans-membrane domain bacteriocin immunity protein 52 28 Op 3 . - CDS 56207 - 57154 281 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 57210 - 57269 4.5 53 29 Tu 1 . - CDS 57411 - 58130 477 ## COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain - Prom 58270 - 58329 4.4 54 30 Tu 1 . - CDS 58426 - 58623 180 ## gi|309805802|ref|ZP_07699839.1| putative lantibiotic mutacin-2 - Prom 58715 - 58774 7.6 55 31 Tu 1 . + CDS 59120 - 59875 616 ## CD1869 putative conjugative transposon mobilization protein - Term 59978 - 60025 8.8 56 32 Op 1 . - CDS 60116 - 60385 223 ## - Prom 60493 - 60552 1.6 57 32 Op 2 . - CDS 60605 - 60775 109 ## CD1862 putative conjugative transposon DNA recombination protein - Prom 60878 - 60937 6.2 - Term 61051 - 61090 -0.9 58 33 Tu 1 . - CDS 61152 - 61466 367 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - Prom 61518 - 61577 5.9 59 34 Op 1 . - CDS 61678 - 62019 203 ## LGAS_0105 hypothetical protein 60 34 Op 2 . - CDS 62079 - 62504 555 ## LGAS_0105 hypothetical protein 61 34 Op 3 . - CDS 62512 - 63177 601 ## LJ0105 hypothetical protein - Prom 63234 - 63293 12.1 - Term 63275 - 63326 9.3 62 35 Op 1 . - CDS 63335 - 64324 1022 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 64350 - 64409 4.6 63 35 Op 2 1/0.000 - CDS 64413 - 65069 836 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 64 35 Op 3 . - CDS 65099 - 65905 716 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 65926 - 65985 11.7 + Prom 65944 - 66003 8.4 65 36 Tu 1 . + CDS 66040 - 67005 1142 ## COG4086 Predicted secreted protein + Term 67042 - 67085 5.4 + Prom 67200 - 67259 8.9 66 37 Tu 1 . + CDS 67325 - 67777 158 ## FI9785_p9785L.16 putative single-stranded DNA-binding protein 67 38 Tu 1 . - CDS 67564 - 67974 345 ## gi|309805781|ref|ZP_07699818.1| hypothetical protein HMPREF9213_0530 - Prom 68001 - 68060 9.6 Predicted protein(s) >gi|308164868|gb|AEHO01000035.1| GENE 1 7 - 2694 2254 895 aa, chain - ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 32 885 41 900 910 808 50.0 0 MLKINTSPKNQTNDTSLVKKIAREDKVATLYRMQTTLNGLTQEEASKRLAKNGPNEIAVD KHNNKLHFLFEAFLTPFTIVLLILATMSLFTNYIFVAPSDKDLSTVIIMLTMVFISGITS FVQNVKTNDAVEALLNMVSVTTNIRRSNQDREYPTKEVVVGDIINVAAGDMVPADMRLLR SKDLFCSSSSLNGESRPVEKIANIKPTDAQIDEYLDYPNILYEGTTIVSGSGMGVVFATG DNTVFGRVAQSISKNNIKETTFDVGIKHISELLLTMTAVIAPLVFLINGLTKGDWLSALI FAIATAVGLTPEMLPVIVTSNLVKGSVEMSKHGTIVKKMNSIQNFGSADILCTDKTGTLT QDKVVLERHYNLALKEKKHVLELSYLNSYYQTGMKNLIDKAIIEAAGDELDINDLQHRYN KIDEIPFDFKRRRMSVVVANDNNEHILVTKGAAEEMISCSTKMEVDGQVKPLTEQRKKQI LADIAEMNDDGLRVVLLGYKMNPAPVGEFSVDDESELTLIGFLAFLDPPKESAKAVIENL KHDGITIKILTGDNAAVTRNVGLQVGLNVDTIYTDSDFAGKTHEEMKKMVEECDIFVKLS PESKARIIQLLKENGHTVGYMGDGINDAPAMKSADVSISVDTAVDIAKKSADIILLHKDL LILENGVRIGRQIFGNTMKYIKITLSSNFGNILSILVASSFLPFLPMLPLQLLILDLLYG TSCLSIPFDTMDKQYLDVPRKWSTRKLPKFMFYFGPVSSIFDIITFALLFFVICPTVAGG QYSQLAASQKTIFATVFTAGWFIESLWTQEIVIHALRDPKIPFLQQRPSVIVALSTILTS IFGTVLPFVPSIAKMMKFGELPGYYIILVFILLVMYILLTTIIKKTVFKIRTVFN >gi|308164868|gb|AEHO01000035.1| GENE 2 3026 - 3595 282 189 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0203 NR:ns ## KEGG: LGAS_0203 # Name: not_defined # Def: beta-propeller domain-containing protein # Organism: L.gasseri # Pathway: not_defined # 1 177 1 183 195 84 33.0 3e-15 MKTRVLLFVFVLWISLCFTSVSAVASGPIKVSDKLIERINHKNKCYAKTPLKIRLTLISM PSQHSEQVQKVKNNQVLILLMDNDLRIKVGSKMQKILSVSKCNAIILYVSKYLRSNDKIK QNQGLEKAVNAIYTIIDQEYNLPFDSSDLTSKEMDKILHPQRNNLIWTVVVVVIFSFIIT YTQRRRFSL >gi|308164868|gb|AEHO01000035.1| GENE 3 3592 - 4065 615 157 aa, chain - ## HITS:1 COG:SPy1823 KEGG:ns NR:ns ## COG: SPy1823 COG2131 # Protein_GI_number: 15675651 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Streptococcus pyogenes M1 GAS # 4 136 3 135 153 187 62.0 8e-48 MVRDRISWQQYFMMQALVISQRSTCDRALVGSVLVKDKRMIATGYNGSVTGEPHCDDEGH LMVDGHCVRTIHSEMNALIQCAKNGISTEGCAIYVTHFPCFNCTKALVQAGIVEVNYYYD YRDNPLVMALLSDKHIKVQKINIDRKYLHNLEKSLEI >gi|308164868|gb|AEHO01000035.1| GENE 4 4087 - 5106 1205 339 aa, chain - ## HITS:1 COG:SP2229 KEGG:ns NR:ns ## COG: SP2229 COG0180 # Protein_GI_number: 15902033 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 2 337 3 341 341 452 65.0 1e-127 MKKVLLTGDRPTGKLHIGHYIGSLKNRVKLQNSGEYDPYIMIADTQALTDNARNPEKIKN SLIQVALDYLAVGLDPEKSTIFVQSQIPALFELTAYFMDLVTVARLQRNPTVKNEIKQKG FNDSLPIGFLNYPVSQAADITAFKASIIPVGDDQEPMLEQTREIVRTFNSVYGKEILVEP KGYFPPKGHGRLPGIDGNAKMSKSLNNAIYLSDDSETVKKKVMSMYTDPDHIHVQDPGKV EGNTVFTYLDVFDPDKDKVASLKEQYQKGGLGDVKLKQYLYQVIEAELMPIRERRANFAQ NTAEVYEMLQEGSRKANVVANQTLAEVREAIGLNYFDHK >gi|308164868|gb|AEHO01000035.1| GENE 5 5360 - 6031 369 223 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0198 NR:ns ## KEGG: LGAS_0198 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 4 222 1 219 220 139 45.0 1e-31 MKTVNTPKSFQGNIVRYSVYLVIYLFLYACIYQVIHIARVNWLIDIPILIFVLLGLFFYT RRYNKEQRYFEKKTEITLASDYKLIVGATILLIAFRLLIAYFQFKKYVPFTGNQLFYLQH ENNDLFWLLIIYQGLFLSIMQQFLGIGFFFNYFFRKQTFFHAMVGILMSALFFAFLNLQF SLLWFIINFAFGYFLALFYLYSQSFLWTIYFAILNSIFWIILL >gi|308164868|gb|AEHO01000035.1| GENE 6 6145 - 6459 283 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309805792|ref|ZP_07699829.1| ## NR: gi|309805792|ref|ZP_07699829.1| PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners LactinV 09V1-c] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners LactinV 03V1-b] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners UPII 143-D] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners UPII 60-B] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners LactinV 09V1-c] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners LactinV 03V1-b] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners UPII 143-D] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners UPII 60-B] # 1 104 1 104 104 136 100.0 4e-31 MNKQVTIACTTGLSAAILVTKIKQLITDDAITIESTAASQIADIIKQQKTDLLLLAPQLA YLRDQVNELILQKSNNKILVKYINIDLYSQLNANQTLEQIKKIL >gi|308164868|gb|AEHO01000035.1| GENE 7 6773 - 7819 997 348 aa, chain - ## HITS:1 COG:SP1061 KEGG:ns NR:ns ## COG: SP1061 COG0515 # Protein_GI_number: 15900931 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 296 98 382 448 110 32.0 5e-24 MGYYGNSQVGKFITIYPPQDKVLNTLEILYYFFHNDIGIPVGSDFSYKLSSNVYYRFGTL LLDSRNIDKRDKQLKPFKDAETIPDYTLRHLHQLPSNYLILKVLKKMGPTGVFLGLDIST RKKVIIRYATKLYNLELSGIDENDRLLSTSSILKMNEIKNNSHYENIIDTFYVDTSVFLV TEYIDGRTLDEMALDGELDKLSNSQKMHIFNQMYSSITNLNKLGIMFRDISFNNVIITQN LELKIIDFNYAVSQSGLPNFGGRKVNPAGTYGFYNPVIQMKYHNSDKYGLAKFLYFLFYP KAYVQFISQIDIDTSYSRITDILKSVTCVPLPKEVDILYHSLLDEFLY >gi|308164868|gb|AEHO01000035.1| GENE 8 8070 - 8378 361 102 aa, chain - ## HITS:1 COG:no KEGG:Ldb0333 NR:ns ## KEGG: Ldb0333 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 29 102 21 94 94 61 43.0 9e-09 MNFNEIYREPDSSLTYALKRIVCEINKNNTILIKTRIYYEYNLFIINSYRQPRSKRYSIS QLGEYFREHIIQTDKIEYLIIRYIDGMYLLAQLDNEEQGFVP >gi|308164868|gb|AEHO01000035.1| GENE 9 8403 - 8645 375 80 aa, chain - ## HITS:1 COG:no KEGG:Ldb0332 NR:ns ## KEGG: Ldb0332 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 2 77 1 76 81 95 67.0 6e-19 MMSQEFKKLIEQLQDDPKIISKFLADPVAFLEKLHITSEERKALLSRDVEALNVLGLNDS QAVGALSGAHSQRCSTNRRM >gi|308164868|gb|AEHO01000035.1| GENE 10 8777 - 9304 200 175 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 173 1 183 245 81 31 1e-14 MIDVSNLTIGYKDTTVVKNLDFKLNKGEFIALIGANGAGKSTLINTLIGINTPLSGKISW ELKSTKKNMFNDVGFSPQSQLIDWYTNVLDNVIQGPLLAGYDLRTAQKYAKEALQLLDLY SLKDKAVDHISGGQQQRVQIAREIARKPKLYILDEPTTGLDVETSENLFKYLKKK >gi|308164868|gb|AEHO01000035.1| GENE 11 9478 - 10278 711 266 aa, chain + ## HITS:1 COG:SP1063 KEGG:ns NR:ns ## COG: SP1063 COG0842 # Protein_GI_number: 15900933 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 230 1 230 266 142 34.0 8e-34 MNPKQFRHQSLGLKSIKIVANNEWRAFKHNKGLLLSMLMEPLITYGLLVMALNENLSAVH YAGLTISYNKYALTGVLTFFMTTQMSQAMYRSTVDKEYGLLAIKFTNGVQPWHYITGMSF FPMIGLLFQSSILLILGGFTGGIYNIGLLLLSFLVLLISLEFWSALGIILSTRISSYEQR DVVMTLLFSPISYAAPTLYVFNSHSPFIIKVLSAINPLSYQLKAIRTVAFGIFNWIDILI AIVITLFMIVIAQFILKRMPLTLSER >gi|308164868|gb|AEHO01000035.1| GENE 12 10371 - 10832 523 153 aa, chain - ## HITS:1 COG:CAC3198 KEGG:ns NR:ns ## COG: CAC3198 COG0782 # Protein_GI_number: 15896445 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Clostridium acetobutylicum # 7 153 9 158 158 90 39.0 1e-18 MVYFQKMTPEGYKKIETEIAELKKDRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQS RLRFLNKQLQYAQIVQKNNDGVIDLGSQVEIQFEDEVEIEPYTIVGTLEADVIDNKISFD SPLGAALMHKKAGDLVKVNAPAGSYQVRIISVK >gi|308164868|gb|AEHO01000035.1| GENE 13 10995 - 11162 155 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315654051|ref|ZP_07906967.1| ## NR: gi|315654051|ref|ZP_07906967.1| membrane protein [Lactobacillus iners ATCC 55195] membrane protein [Lactobacillus iners ATCC 55195] # 1 54 60 113 216 74 100.0 3e-12 MKYQTSSKLIIIRAIYSIVMIAILAIIIGSQYLLKLSSEMHNIITYLAIVLIVFY >gi|308164868|gb|AEHO01000035.1| GENE 14 11168 - 11467 297 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309809141|ref|ZP_07703014.1| ## NR: gi|309809141|ref|ZP_07703014.1| conserved domain protein [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners SPIN 2503V10-D] # 1 99 118 216 216 175 100.0 1e-42 MLIYTPLEYKMLGIKINDSGVIIHRGLIVRKKIYIAWSKIYTVTKSNGPLELLTNTKSVS VVTLANEITIPAINKKQADEFIKCMNQAIKEHTNENTSY >gi|308164868|gb|AEHO01000035.1| GENE 15 11448 - 12875 910 475 aa, chain + ## HITS:1 COG:BS_ydbT KEGG:ns NR:ns ## COG: BS_ydbT COG3428 # Protein_GI_number: 16077527 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 8 366 10 382 493 65 22.0 3e-10 MKTRHTSPLPIFLYLLLCIIITLIFSWLYLKHAQFLHDLSYVKYIFLAPLTNLFMSIYYW LNFKYYIDNEKIIIQKGIFNISQRQFLIKNVRQSNQHTPIIFRIFKHTNLVVDTGVNSDE EGTLNFNCISLIECKRIKDLINLGGTNESKYSLKQFIKGDFIANQNERLLFKTNILDVML SSLTSINIVAYISIIAIVTSVIDNINLRHYLPNFIYTYIKNSTLFWSTATILAFCFLLIN QFIIYGNFKLLDDKDTFYSINGFIEHRTNSFKKIYIKTIAIRQNLIMQLLGIHTVETYSA SPAIPQDNNANRNTFLPFIKTTPMYENLHQFFPKFSFKNIALENNSALLKRLSIIFFVPF IILLIIAIAKQNLYIFIICGVILISYLIQIIHMIFTNIIISKNTIISRTGMLNKICLYTL ISDVEFFAIKQGPLQWLLNTYSITIVIRKSPVAFITIPFIPPIKKQELLDELKKR >gi|308164868|gb|AEHO01000035.1| GENE 16 12945 - 14255 1721 436 aa, chain + ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 1 436 1 437 441 395 45.0 1e-110 MAHELTFEELKDFQESFNNARNKVVARAAMKSGLLEASFNPELGDKLNHVFSIEVDTENV TNQQQSGRCWLFSTLNTLRHEFGVKHKVKNFTLSQAYNFFWDKIERANRFYDEIIDSANQ PLEDRTVQEYLRFAGEDGGQWAMAASLVQKYGVVPSYAMPETYNTNHTAALAESLGRKER KDALVLRKLVQEGKLEEVEAKRKEFLNEVYRMTALAVGEPPKTFDLEYKDDDKKYHLDKN LTPVEFFKKYINFDFSDYVCLTNAPDHEYNKLYSLPFEDNVNGGIPITFLNVPMDVLRKA TIAQLKDNETVWFGNDVGKQKDNKTGYLDTDLYQLDQLFDVDTTMTKKERLETREGTVSH AMTITGVDLDGETVRKWKVENSWGDKIATKGYFTMSDQWFEEFVYEVVVHKKYLTDEQKQ IAQSEPEPLKPWDSIA >gi|308164868|gb|AEHO01000035.1| GENE 17 14399 - 16348 2057 649 aa, chain - ## HITS:1 COG:L49741 KEGG:ns NR:ns ## COG: L49741 COG3590 # Protein_GI_number: 15673785 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Lactococcus lactis # 21 649 3 627 627 458 40.0 1e-128 MTNINIRGGIGNIIEPDTNARPQDNLYLAVNSEWLKKAEIPSDRSRTGSFDKIDENLEKQ LMKDFSEFAKASKELPEVKNFDKAVELYKIANNFEKRNADGAKPIQLDLKLLEGLRDLND FNLKAADLTKAAFTLPFNFSVQTDMKNTKVNALHFSGPGLFLPDTTVYKTDSAKQLLDVF AKQSVNLLHMAGIDETVAKKYVQDAISYDARLAEVVKSTEEWADYPAMYNPTDISDFEAK FSSFKIDQYLNELFPEKPNRIIVAEPRYLDNVEKLINNNLFDEIKGWLIVEFINDVACYL SQDFREAAFPFSQALSGQPELAAGEKQAYRIASGAFSEVVGVYYGQTYFGSEAKADVLDM IHNMIDVYEKRIAENEWLSQATKDKAITKLRALILKVGYPSKIKEYYNRLQIMTEKTGGT LYSNMSKISQASLQYELEQLYKPVDRTVWLMPGHLVNACYDPQRNDITFPAAILQKPFYS LEQSRSTNYGGIGVVIAHEISHAFDNNGAKFDEFGNMKNWWTEQDAIEFKKRTQAEIDLF DGIEYGPVTLNGKQIVSENVADQGGLTAAVEANKIEHGDMKELFENFARVWANKQYSESI KTQVAVDVHAPGPERANVQSQCQEEFYKAFDVKPEDGMWLDPEKRVVIW >gi|308164868|gb|AEHO01000035.1| GENE 18 16463 - 17683 1126 406 aa, chain - ## HITS:1 COG:BH3282 KEGG:ns NR:ns ## COG: BH3282 COG0477 # Protein_GI_number: 15615844 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 16 389 5 378 401 177 32.0 2e-44 MKTAHGTRPRDEINLVWLLLGELLDWIGASFIWPLTSVYLNKNLHVSLAIVGIVILCNCL ANMVGSVIAGWAYDRYNPYYLLIAGASIDATVLFCIALNHSWPIYWFWMTLTGFLAGWNG ALINSIATSIHSHPSRYVFNMLFFAQNLGVVLGTLFVGYLYDYSITMLFVIAALLFVGVS INAILNYRPSIQFHKERLAAKIQNQQKVKYEKMPMNNFKMTFGLFITIGIIWLMYMNWES NLSVYMVSLGIPFHLYSFLWTINAGIIVVIQIFMSRYPNIFKTLFHQIVFGISMFAISFI TLIFAKDFFHFVLSMITLTLGEATAMPAIPAYINDLSPTSSKGKYQGLTLSTSSIGRALG PLFGGIVIDNWGYINFFIVAAIGIFLTLVLIGPLHKQLKKRFVIYK >gi|308164868|gb|AEHO01000035.1| GENE 19 17786 - 18499 563 237 aa, chain - ## HITS:1 COG:SP0205 KEGG:ns NR:ns ## COG: SP0205 COG0602 # Protein_GI_number: 15900141 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pneumoniae TIGR4 # 54 235 3 183 196 268 71.0 5e-72 MPERDKNKQDGPDIRSNLIKVNVGGDTLFVDSNQYRLKRRKAKYIDTKQRQPKNPKPQEW ISEKYSQHKIADYKPFNFVDGEGVRCSLYVSGCLFDCPGCYNLAAQNFNYGMPYTQELED KIIADIAQPYVQGLTLLGGEPFLNTWVCLKLINRMRKEFGHDKDIWSWSGYTWDELQLET DDKKEMLSKIDILVDGRFLDPLKDLTLQFRGSSNQRIIDVQKSFAAGHVVIWDKLVR >gi|308164868|gb|AEHO01000035.1| GENE 20 18524 - 20713 1918 729 aa, chain - ## HITS:1 COG:SPy2110 KEGG:ns NR:ns ## COG: SPy2110 COG1328 # Protein_GI_number: 15675860 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pyogenes M1 GAS # 18 717 15 723 732 948 63.0 0 MLKQREAKIITSKVSIPLKATKRDGSVYDFALYKLRMVIDNLGLAKNEQVILSAILSQLA SKENVTTIEIASAFVRVLREMGFTQAAQQYIDYRKQDEANFVRQTGTTDRLHRLLEHDPT IVNENANKDSRVFSTQRDLTAGTVGKTIGLTLMPEHIAKAHLRGDIHWHDLDYTPLSPMT NCCLIDFKEMLSHGFTIGNAEIESPHSIQTATAHMSQIIANVASSQYGGCSADRVDEVLA PYARKNYQKHLDEAAEFFDDQEKIKAFAKKRTKKDIYDAMQALEYEINTLFSTQGQTPFT TLGFGLGTDWFEREIQKSILKIRIEGLGRTSRTAIFPKLVFTLKRGLNLNPTDPNYDIKQ LALECSTKRMYPDVLMYDTIVAITGSFKVPMGCRSFLQGWKDENGKEVNAGRMNLGVVTI NLPRIAMESKGDIDLFWSILKERLQTAHEALQIKADRCRQAKPDNAPILYENGAFGKRLP ADGDINDLFKNKRATISLGYIGLYEVGTVFYGSCWEHNEEAHQFTINIVKKLHDACIKWE AEDPNHYHYSVYSTPSESLTDRFCRLDTAKFGIVKDITDKEYYTNSFHYDVRKHPTPFEK IDFEAPYPHYAAGGFIHYCEYPNLRQNPKALEAVWDYAYDKVGYLGTNTPIDRCFKCNFA GEFEATAKGFQCPKCGNHDPESCDCVKRTCGYLGNPLKRPMVHGRHEEIVHRKKHMSYRM EEKLANDNK >gi|308164868|gb|AEHO01000035.1| GENE 21 20936 - 21253 265 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312874798|ref|ZP_07734817.1| ## NR: gi|312874798|ref|ZP_07734817.1| conserved domain protein [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners LEAF 2053A-b] # 1 105 1 105 105 139 99.0 5e-32 MLSPIMQGCLLCVYFIVIAYSKEIYRLLRKTSGGSVPLKSKILLFMGDLFSAIVVLIAVI HPISKMDNISSIMSSFSLALVPVIFIVALIILIAIYLFTKRANRI >gi|308164868|gb|AEHO01000035.1| GENE 22 21433 - 22146 953 237 aa, chain - ## HITS:1 COG:lin1574 KEGG:ns NR:ns ## COG: lin1574 COG0580 # Protein_GI_number: 16800642 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 2 235 6 239 272 253 56.0 3e-67 MLTHELLGEFFGTCLLVLLGDGIVANNCLAKSKGKDAGWLAITLGWGLAVMVGSYASGIL GPAHLNPAVTIAFAVKGSLPWSSVLPYILAQLAGGFIGAILVWLAYYKHFEETTDSDTIL GIFSTEPAIRSYLHNFITEAIGTFVLVFAVMTFAKNNLAAGLNPLIVSGLIVSIGLSIGG PTGYAINPARDLAPRLAHSVLPISHKGRSDWAYAWVPIFGPIVGAILASLAYMALPL >gi|308164868|gb|AEHO01000035.1| GENE 23 22165 - 24000 2446 611 aa, chain - ## HITS:1 COG:SPy1683 KEGG:ns NR:ns ## COG: SPy1683 COG0578 # Protein_GI_number: 15675544 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 1 611 1 610 612 819 67.0 0 MKFNYQTREHAIEKLQDRTLDLLIIGGGITGAGVALQAAASGLETGLIEMQDFAEGTSSR STKLVHGGIRYLKNFDVEVVADTVGERAVVQQIAPHVPKPDPMLMPIYDEEGSTFSMFRL KVAMNLYDSLAGINSNSEFANTMLTKEEVLEHQPNLKQEGLLGGGQYLDFNNSDIRLVVE NIKRANQDGALIASRVKAVDYTFDDNGKVNGVVAEDLLNGKKFEINARYVINTTGPWSDK TRNLNKPEHPIEMMRPTKGVHLVIDRSKLEVSQPIYFDSGYNDGRMIFVIPREKKTYFGT TDTDYHGDFEHPTVTQADVDYLLKAVNNRFPKANITLDDIESSWAGLRPLIAGNAASDYN GGDNGKISDDSFNGLIDTVQSYLKKDKTRDDVEKAITNLQGSLSEKELSPSEVSRGSSLE QDDNGLITLAGGKITDYRKMAAGAMELIIKLLAENYDKHYQLINSKTYPVSGGEINPNDI ESAFDAYAQMGVTRGLEREDAYYLASFFGSNAPQVYAYVDKVPAVEGMSLAETVMLFYSL DNECVLTPNDYFLRRTNYMLFMRDKMDRLIDPVLNIMQEYFGWSDEEKQNHMDHLQKALY DNDLIALKEHK >gi|308164868|gb|AEHO01000035.1| GENE 24 24003 - 25523 1460 506 aa, chain - ## HITS:1 COG:SP2186 KEGG:ns NR:ns ## COG: SP2186 COG0554 # Protein_GI_number: 15901993 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Streptococcus pneumoniae TIGR4 # 3 501 4 502 502 799 76.0 0 MGDNYILSIDQGTTSTRAVIYNHKGEQVGSYQKEFDQFFPKAGWVEHDANQIWNSVQSVI AGAFIESGLKPAQIKGIGITNQRETTVIWDKNTGKPIYHAIVWQSRQTAPIAERLIQQGY KDMIRDKTGLIIDPYFSATKIRWILDQVDGAQERAEKGELLFGTIDSWIVWKLTDGAAHI TDYTNASRTMLYNIKDLCWDNEILKLLNIPKAMLPEVKSNSEIYGYTKPFHFYGAKVPIA GMAGDQQAALFGQLALEPGTVKNTYGTGAFIVMNMGEDFQLSKNNLLTTIGYGIGGKVVY ALEGSIFVAGSAIQWLRDGMRLIEKASQSEKLAEDSTNDDEVYVVPAFTGLGAPYWNYNA RGSVFGITRGTTREDFVKATLQSLAYQTRDIINTMELDTGINIHLLKVDGGATMNNYLMQ FQSDILGIELDRAKNLETTALGAAFLAGLAVGFWEDIDELKTLEAVGQRFSPTMNNARKE QLYKGWQRAVKATQVFSKIEDDIVEE >gi|308164868|gb|AEHO01000035.1| GENE 25 25651 - 27066 940 471 aa, chain - ## HITS:1 COG:no KEGG:SSA_1825 NR:ns ## KEGG: SSA_1825 # Name: not_defined # Def: hypothetical protein # Organism: S.sanguinis # Pathway: not_defined # 1 466 1 474 475 171 28.0 7e-41 MLVTALLDNQSALRYQILNILLEQSQPISLKILMDKVDISKQTLTKYLDEINQMYQEEEL EACISTNPETIRIILDATLSFKDLCWPLIRNSLSVHVIELLLNHPNLSNYQMASTLMISE ATLSRQLVQLNQALKEFSIQIKNGMWYGPEEQVRYFYYEFYRHFYPDNELFRLKHDANLD QSLAIFEHRLSTNLTLVQREKLSLWLGISQKRWRQKDKDYSQLINRFKPYQEVVFFDRIY QAVLRYLIQFSLKLDEGEIYALMAFILSMDLLDYSNNERLLGFGGPIAKASQCFLNQVKN LTQKGQAVMREEVLYCFGQSSTKLYFFEGAILQKPLVADPKCLSMVKIVMETIFKRKFKK ANNITITISETLNTLVDYLNLPPCKEHKIGVLLLGDPIKNSIQRLQLQKTLEQPPYITFE TFDQKKWLDYDLVITNVNLPEKNSVQVYRLKNSSMTYDFTQLKLIFRNLLY >gi|308164868|gb|AEHO01000035.1| GENE 26 27060 - 28376 1080 438 aa, chain - ## HITS:1 COG:L178227 KEGG:ns NR:ns ## COG: L178227 COG0446 # Protein_GI_number: 15674108 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 1 410 1 419 443 150 28.0 5e-36 MHIVIIGGSFAGVSAALSCKTYYPQAKITLIEKGTGLAYIANSLNEYLKGKLADLKNGYA YSIKDLQSKGINCLLNHEVTKIDSTNQILYVKASGDSMTLTYDYLILAMGGKGFTEEPVA ALIDPHSYESSLKSFEKLQKAKTVLIVGGGTIGIEACEAYQRAGKDVTLLEAYPSLAVKY LDKPISQAVERLLVSHGVNVHKRELVNKIVPVNDTIAYQVITNNSTYLSDCVQFATNFTP NINLVENQIALLADRSIAVDEYLATSLKHTFAVGDLIQIPVGLHRKSLYWPSIQHSITSG SIVAANLIVPTKALPSSETCLYSKLYGYNLLSLGMTASSAEEEGIVTFTSTYVSQKGGQI FIISKADDGQILGIQWLSLAPLQAELALLMTGLQAKFSEDDFLVQAPPFYSGKSLIQFDL YKALYHHKSLRQKEAHLC >gi|308164868|gb|AEHO01000035.1| GENE 27 28569 - 29780 1025 403 aa, chain - ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 1 394 21 407 408 384 50.0 1e-106 MARSFHEAYGIKVKTLAAGHLAATRYSKIVDVEVHPGFEDDPTFINVMRSKMIEYQDYSE PVILIACGDGYVELLAKHKDELSATFVIPYVDYDLLEKLISKENFYKIADKYGLPYPKTQ IIKITDYQTDDYLKCMSFGFPVALKPEDPVSWLDCRFEGRKKAFTIHDAAELKDIVTKIY THGYKEDLILQDFIPGDDSKMRVLNAYVDKNHKVKMMCLGHPLLEDPTPQSIGNYVAILP EYDLNLYNTVKTFLEKINYVGMANFDIKYDERDHEYKFFEINVRQGRSSFYVTLNGCNLA KCYIDDYVEDSLKDQDPVYANQDPKKHVLWLGVPTKVFKQYAFENEYKEIAEDLLKKKRV GTTVFYKADCSFKRWLLMKYMFYKYIGRYKAYYQVNKGSFFKK >gi|308164868|gb|AEHO01000035.1| GENE 28 29852 - 31801 1847 649 aa, chain - ## HITS:1 COG:L0095 KEGG:ns NR:ns ## COG: L0095 COG0367 # Protein_GI_number: 15674210 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 624 1 615 625 659 51.0 0 MCGICAFYDPQLENKDQVIEQMMDTIVHRGPSSAGKFTNDKVALGFRRLSIIDLRGGSQP IFNEDKSRAVIFNGEIYNFKPLREELINSGHTFTTKTDTEVLLHGYEEWGMDGLLKRIRG MFAFLIWDDNDQTLYGARDFFGIKPMYYTNNDGRLLVGSELKSFLAFPYFKKELNVEAVK PYLMNQYNDLNETFFKGVYKFPAGHWFAYKNGKFDIHKYWDAEYVQNSLSFEQTLDKINE DLKETVELYHNADVKVGSFLSEGVDSSFVTSLLNPDDVFSISFDDATYDEASKAKALADI KGWTFYSDKVKAEEAMHDFPEMQYHMDEPDANPSIIPLWYLCKLARKHVTVALSGEGADE LFAGYVNYGMHTHNNIIKVFTSGLKKIPKNLRFKLAKGIKKLPNFPGKVHIYTNLASPDE YYVGQSVIYDINYPTIFSAKDANDILQPKYQNKLTVNSNYQADFAKVKNLDSVKQMQYID LHHFMLNDIEQKADKISMAHSLELRVPYLDKKIAELANSIPTKYLVNKYDTKYALRKAAE RVLPEEWAQRPKLGFPTPIKQWLQDPKFYKQVRLLFAEDFVNNIFNQDKILAMLDKNFSG DGSDRRKIWTIYTFLVWYKLFFVDYENTVKKYNHVQPEVASLLASGKLV >gi|308164868|gb|AEHO01000035.1| GENE 29 31867 - 33258 1163 463 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0134 NR:ns ## KEGG: LGAS_0134 # Name: not_defined # Def: 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase # Organism: L.gasseri # Pathway: not_defined # 27 463 31 469 469 563 64.0 1e-159 MNMFRNISKALENIVKKNRAEENNITNNSIFDVMQHYTQVGEYSVGAPEGTPGDKDFDLI VYKNDNGILYQALRPKKAENLAPLFVRKFEPRLNRFRAFQNKKNGRRFIVEEHLDEFINY VKNYTRTNTNSINIGIITDTHQKDVDSLTSYGRLGLLHLKEFNYLEERGFLKLKVHLGDW IDGSDPGLVDEQELINLRNCFSSKRIDYALIKGNHDENDKFDALHEMLPSFPEREFEDIM WTNMYRQHNIHYISRQHGVAYFDYGDLRIIMINTSDVPYILDDNGKKKYNTQHTLALRED QVQEIIEILEKSVNKQIIFMGHAVPIDRKGMNSLKYNGRSLHELMVAFNQREKGYLNSHD VPLEYTLTNKFDFSNVVKGKIIAYFAGHAHAEDQYRINSIQYITFNCSALVSLSDSNKYN HRYNRQVDQRTEYAGYVVNVDLDKKLLQVFGYGAASKRRVYRI >gi|308164868|gb|AEHO01000035.1| GENE 30 33311 - 33793 625 160 aa, chain - ## HITS:1 COG:no KEGG:LJ0133 NR:ns ## KEGG: LJ0133 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 160 1 160 160 172 60.0 5e-42 MEQLTMVSLADKLSAQHDIIISDKQTINVADIFEQIDNLHILQKSAKEYIDMTQEQYYDQ ESDGKLTILQMDKPLKLLKDRILTNHVDGYVDQHEINLTYNHESPYVDGGYNRSVDLNVL IYSLKVIGAVEQIAADDLRKILSKDAVVSLIIAAHSLASN >gi|308164868|gb|AEHO01000035.1| GENE 31 33879 - 34355 530 158 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 155 1 151 152 100 39.0 1e-21 MIKGYNNILVPVDGSESAELAFDKAVTIAMENAAHIDILNIIDTRQFMGELQDTLISGDT VYQMTNDSEEYLKSLQKKAEEQFKFKDVSYHIRYGSPKRIIAFDFIKDHNNDLVVMGATG MNAVERMLMGSVTEYVNRNALADVLIVKTDLNNEKIKK >gi|308164868|gb|AEHO01000035.1| GENE 32 34799 - 35302 349 167 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 19 165 153 297 298 83 31.0 2e-16 MEDLEKWASNDPNFGKRQMFAAYNDMINSSSAQNAYRHFLELLLANNNDNQAALFHCTAG KDRTGFGALLILSALGIPFDTIKKDYLLTNTTTKDFINSMLKKAKDDGGNDNVVKATYDI QSVCAEYLDYVLSNINNNYGSIHNYLRNTMKLSRKDILDLRKIYLED >gi|308164868|gb|AEHO01000035.1| GENE 33 35491 - 36411 794 306 aa, chain + ## HITS:1 COG:DR1581 KEGG:ns NR:ns ## COG: DR1581 COG4586 # Protein_GI_number: 15806589 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Deinococcus radiodurans # 4 242 12 250 346 226 42.0 3e-59 MIVIKNLSFDYVTFEKASGLKGTIEDLFHRKPQYVKALKNINLNIEDGSLIGLIGPNGAG KTTLTKLLTGIISPSSGSVNIDTFIPMQRKTELLKEIGVLFGQKSQLSWDLPAIDTLNML ASIYSLEENRFKKRLKELTKMLNAEDLINKPVRKLSLGQRVKCDLICSLIHEPKYLFLDE PTLGLDLMTQESIYEFLREENKRNKTTIIITSHNIRDIEALAQRLVILANGEIVFDDKLE KLPINISTDDHFVVKYLVNNEPESKNISENDLKNFMQTLSANQIISLTREGINLEEIILE IYKKVK >gi|308164868|gb|AEHO01000035.1| GENE 34 36417 - 37160 563 247 aa, chain + ## HITS:1 COG:no KEGG:Ldb0155 NR:ns ## KEGG: Ldb0155 # Name: not_defined # Def: ABC transporter, permease protein # Organism: L.delbrueckii # Pathway: not_defined # 1 246 1 247 248 171 47.0 2e-41 MKKYLPIFYLGIKSSLVYRGNYLIKIITQVLNLIVTLWMWCWLMGNNVHNFNYLAKYLIM TNTLSLLFSIAPTFTLADLIQSGKLSNYLTKPVSLYWYLYLTYIGSQLPIIIFYLVLGLY FNLNIGFINLILYLIFCSFMFFNLALVFGSLGFWLINMWPLKSGLFAIYLLFGGLYFPLS MLGKNIYSWLQYNPFSLVTDVPAKLIASNINQTNIYYLAVAVWLIIFYCIYKKTFKLGLK KYEGVGV >gi|308164868|gb|AEHO01000035.1| GENE 35 37157 - 37930 486 257 aa, chain + ## HITS:1 COG:alr3052 KEGG:ns NR:ns ## COG: alr3052 COG3694 # Protein_GI_number: 17230544 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Nostoc sp. PCC 7120 # 2 257 11 267 268 61 21.0 2e-09 MRIQKIISSIWKQSIEEFLIYRATSLITFILAVVFLLIELFVGDIYFSNSENANWTRNQY FILITFMNSATYIYNFFFVIGHENLVEDILEGELDYNLIRPVYSYWYSIGTHLDIPSIFN LILSLGLLGYYLALENVGIIGYAIMLINLILTAFLIFLLNQLAVTLSFWVDGLTSLFGMI EDLISYASRPKQIFPMIIQQIFTFVIPVLLASNLPVDMIFHKHNYWLLGYFIMIDILLYY ISKLFWNKGIKHYSSAN >gi|308164868|gb|AEHO01000035.1| GENE 36 37962 - 38111 138 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGHRRTEITTKRTLNFGLSSSELKIFNHFFETNTVYSDNSINNYPVIEK >gi|308164868|gb|AEHO01000035.1| GENE 37 38212 - 39393 924 393 aa, chain + ## HITS:1 COG:no KEGG:Ldb0158 NR:ns ## KEGG: Ldb0158 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 321 1 320 321 223 39.0 2e-56 MQPEREVSNAKAYHNALLYLKSKNLYTNFNLWISNNLTLKIIQCDLINYQNKKVSTGMGK GINFEPILGAVFEALEHYTYENQKISTRRMSLKETLLNNAILLEDVAIKVALKENIHKKI LVTRFSNIYQNKSDLYYPTSLIDTNVNDNNINYNSHIYQYSSNSGYASGSTISEAMLHSI NELIERDSFSKLLIKYGMNKDEDIIAYQIDIQTLPKKLYKLFKDIETTTNGTLSLVKINN KFQIPTYVAILKNKRKYIFPLYGAGTSLIEEYAVERALTEVFQASCVFNSDDVNMFKYMK NLWHKVPGMIDLISFDFIKKIKYSKYICNNQYRDVQVKKLLSSELNILSNCNVNIYIRRI IDDINFNVVQCLIPQFSKFNLVLEGKVLLPYIE >gi|308164868|gb|AEHO01000035.1| GENE 38 39596 - 39967 109 123 aa, chain + ## HITS:1 COG:no KEGG:LBA1932 NR:ns ## KEGG: LBA1932 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 11 120 103 212 215 79 46.0 3e-14 MNFFSRNTYNVTITLPQNELKNFSINSSNGNVKVEEIHTDKGNIVTSNGNIIISKLISRF GFELSSSNGNITVEHANFSGYNLSNSNGSNKFRGMHVSNSFAKITSKSNVLDINNSNGDI DIY >gi|308164868|gb|AEHO01000035.1| GENE 39 40077 - 41654 1062 525 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 3 514 4 518 535 132 24.0 3e-30 MALKYVEKRYIFIFVILSFFKSLQAAFIAVVSQQMVNWVNKPKLSYLFTIVVVALVGLIV FWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIETDKIEA ELQIITNVIQFIIAIIASIAGSLPLTIVFMLASFLPGIFQRILGRNIEEKSKEWDKSNSK YTENVKETKMFSASARLYNTENNLWKRFKSSANTMEAALLKLNFWQGFTNETINTIAYSV ITIAPIALGVYLVSIKNITLGTLIMVSQLSNNFVNPVIIISAYLNDMRVAKHMWEKIQDL SQKSNCLQNSKLGIDYFNGIELKDVAVAYKDKDVFSNVSFDIKKGEKVLIVAPSGWGKST LLNTLLGNINIKNGRYLINGEDMTTDIKKVHNYFSYINQEPRLLDDTILYNITLGCKDDQ NILNDVISKAGLEDLIKEKGWDFKVGQSGSHLSGGQKQRIEIARALFFNRPVILADEATA SLDPVLAKQIHETLLKEYHGTIIEVAHHLTTEEKGMFNKVIQFGN >gi|308164868|gb|AEHO01000035.1| GENE 40 41962 - 42360 403 132 aa, chain - ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 128 1 125 134 116 48.0 9e-27 MAKELILISHGKLAEEAKKGIELIMGPQDNIQAVCMLPEDGVSDFQKKFEDATADFSVDD IVVFADLMGGTPANTVSRLIKAGLNIKLYAGLNMAMIMEWLNCQMVDDRVPDYVKAGKDG VVDVNAFLNTDN >gi|308164868|gb|AEHO01000035.1| GENE 41 42453 - 43535 1256 360 aa, chain - ## HITS:1 COG:SPy1694 KEGG:ns NR:ns ## COG: SPy1694 COG1820 # Protein_GI_number: 15675552 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pyogenes M1 GAS # 14 353 37 376 382 364 50.0 1e-100 MVILVSIIQKQKKPTNVVIKEYADKLVAPGYVDTHIHGLLNEDVMKSNWNGINKISEGLL QAGVTSWLPTTITAASSTLTHICQMIAEHKGEETGAKIQGIHFEGPFFTPEHGGAENPKY MTDPSMTEFDKWRAASKNMLIKISLAPERRGAKEFTRQAIKEGVVVSLGHSSANYEETMS CVDAGATMFTHTFNGMNTLSQHTPNIIGAAFSSNLTIAELICDGHHVEPAAIKALISAKG YEHIALVTDCMQAGLMPDGDYMLGELPVYVKDGMARLIGKNNLAGSVLLMKDAVKNLVDW NIATPEQAVMMASYIPAKSINKLKYCGVIEPDHPADFIILNSDLTLVETYVNGISRYKND >gi|308164868|gb|AEHO01000035.1| GENE 42 43702 - 46656 2051 984 aa, chain + ## HITS:1 COG:alr4773 KEGG:ns NR:ns ## COG: alr4773 COG1501 # Protein_GI_number: 17232265 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Nostoc sp. PCC 7120 # 364 646 465 748 779 120 29.0 2e-26 MTSVLKDNQKQNYLSDLCQVIKKKDYYELIFKNNEIGKLYIINDEIFRLVIQPKGKEELP SVPFSCTKIKQSQKDYFELSKLLITEETFIIRNQRYSLRIQKKPALISIFDERTNHYRMK QKQPLLFQDNCTTETLTQNDNEFYFGCGMQNGHFSHKGNTVQIKNTNLTGLGAVACPINL FWSTAGFSELRNTWSNGIYDFGQQSPSYSSIMHFCDIFDNFYILGDNPAKLLANYYQISG QPLFLPKFALNLGYISDLSSKKVDDTSDIAIHKQNWLTAIEDKIKLFAKKEFPLSWIIPD FKSKATFDINSTKNLSEYNINFGSENLRDNGTFGIIQLPMNNTDNLTIIDNLRNMHNQLD HQNQRIWLMTNNGWAGIHTYSATVNGGVGGEWEELSAQITSFLGLSLSGQPNFGNALDGE YGGGNAQVNLRDLQWKIFTPLLFNMDGEGNIEKTPFAFNNKITKINKAYFNLRKRLTYYL YNLLKQAQDGFPMIRPLCFNFPRETYNYTTRVNKEFMLGDSLLIAPITNGRENHDGLSIK DNIYLPDDRTVWIDPFTGKKFPGGLSYDQLTFSSWHLPVFIKQGSIIPNNLRDANIFPCN QETAILYDDDGISRQYQNEQFATTKIDSSLQNKTLVISIAATQGDFDKLDLQQPTYLTIF TDNHPQNIIAKRNNEVINLVETNDIDTLDDQTSGFSYIANFNLWPEFSEYTQSNHNIIRI KLVSQNIKQDHFELTINNFTYCNDVQMHAITDSALIIPKDFEIMPKSVTSKSMTVHWSNI PTPINDHLTADIELNGIIHTNISGNIFTLHELQSNTKYRLRIRNRYLNKVSEWSENITGK TNPDPLEYAVKDIKISANLESTLEMPLESLIDFCPASEWLSKEKITTNNPLVLTINFDQI YKLSRMVYIPRSRDHKGHVLKIRIAISKDGLNYSEWSAPYDWNDDAKNKVIGLRDVVAKS IKLHITDAVDGVVSGKELLFFKAK >gi|308164868|gb|AEHO01000035.1| GENE 43 46739 - 47488 666 249 aa, chain - ## HITS:1 COG:L17781 KEGG:ns NR:ns ## COG: L17781 COG5438 # Protein_GI_number: 15672790 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 22 249 21 248 253 122 33.0 5e-28 MNNIFVLLLLLLLGLMILVGGKTGLKSYLSIIINALLIILVALLISWGINIIGVAIVFIP LKLATIIYLGTHDYKVARNSFLTALAISCIVIVLIIMFEYVAQAAGFGDQSGEELVGLSL QAGISFPQISIVVAIFSTLGAIAEASVAMSAGILELKRHDKDITIRQIFKSAEQMGDDIL GTAINTILFGFFGSFLPLFIWFMRLNYSLVEILNDKLFVSEALIVVYSFVGVLLTIPLTT IFLVKGLKK >gi|308164868|gb|AEHO01000035.1| GENE 44 47500 - 48585 680 361 aa, chain - ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 14 357 13 362 370 181 32.0 1e-45 MSKKQRLIISVVILLLGLFCSLWIYFSSKGLTHPVGRIIDTNIHDELVNKVEDTYRNKDE VRHQIIHVKVLSGKHKGETHTISNYYSPSQVLTQKYHGQQMVIMSFVKNKPTIVSPKRDG IVVFAIFLMISLLILITGFNSISILLSMILNSVVFYFIIKFDIMENGTQIFAIYGTAVVL FAFISLIIVQGCNKKMLVTLASTLLGVFISFGMCYLLMRLTNEKGIKYEAVAYATQDPRA LFLAQTLLGVLGAVMDEATDIVTSLYALCQHKPHITFKELFNSGRTLGQEIMGPLINVLV LIFMAESLPMAILLLRDNNTLIYTCQFALSLGILQSLVSAIGIVVTVIFSALCCYVFIPK H >gi|308164868|gb|AEHO01000035.1| GENE 45 48605 - 49273 589 222 aa, chain - ## HITS:1 COG:no KEGG:lhv_0144 NR:ns ## KEGG: lhv_0144 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 3 219 9 246 246 120 38.0 5e-26 MQEKMLVTSQVAKQLGISVATLRKYSSEIEQVTGNHMYFVRNNKQSRMYTPQNVRLLQTV LTLINQKKLPYKEAISQLFEVHASDKMPQVNKVNSSYNMIDAKQVVQLLGMLQKTIEQQN VAISGLKAQMEQLSQQNSQLLIDLNSKKDKEVDPKILAMPDISGVEPINSSESAETIHEE ILRKARENQQKHPNITMHRTLADMQLKDKHHWWDPLLKFIQK >gi|308164868|gb|AEHO01000035.1| GENE 46 49298 - 50380 1136 360 aa, chain - ## HITS:1 COG:ECs0431 KEGG:ns NR:ns ## COG: ECs0431 COG1181 # Protein_GI_number: 15829685 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Escherichia coli O157:H7 # 3 355 2 360 364 304 45.0 2e-82 MNKKIRVGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVL EDPSYQIENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDD VLAAAITMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKP ANQGSSVGISHVTSASDYKAALAEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQ ITNAQGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSML SSDNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYALDRYAHKKTLLHKHD >gi|308164868|gb|AEHO01000035.1| GENE 47 50613 - 52052 1102 479 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0106 NR:ns ## KEGG: LGAS_0106 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 472 1 506 508 495 52.0 1e-138 MRLRIKITSFFITASILISTLAGTTANAAGFTKKDLNNIHRIQEQYALLPKMRYNQKNIY HKEPHLSEPFDPGILSAEYISSQLAYINYYRSMFGLNKINTDSTNNDNAQIAASVMAAAQ ASPFVNQHGLPSLVKPPFISDMFWNIAKIVTASSNLNFNINNQTAGEVVTDLLTDRFNLD GSDTGHRAWLLSTKISKTGIGAAYGENGYRYSVQQVAFAADSYAAPCQTSVLYPASNLFP IELLQGSNIAWSLYLSEKRINHLPKITITDLDDNQSYKVNHVNNFSKQGFGYFSTIITYY PANMPLILGHQYEVNIHGLYKYTFKLFSLDPTKPLPLDTDDSNKNKHRNNAQKIKSALLS KAEKLRDSLNKDRAMNINLFGKSYQDGKQFYNLGAQQWFHDFFVVDVPDLTAGIIDITDK TIDKNIYTSPYKQYRRNTFTQLQAGKSYAYGQIIQINKTNWYYLGPHRWFRQQVSRHTL >gi|308164868|gb|AEHO01000035.1| GENE 48 52254 - 53024 491 256 aa, chain - ## HITS:1 COG:SMc01214 KEGG:ns NR:ns ## COG: SMc01214 COG1063 # Protein_GI_number: 15965330 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Sinorhizobium meliloti # 4 198 77 285 347 72 26.0 6e-13 MDNGKFVVINPNITCGKCYSCLNGYENLCSKEKAIGTNVNSGFQGWLQVPSTNLEYIEKP DLKYIFTDPLAVVLHGMSMIKILSNYKVIVLGNGSIAKILVWRLNLLGIKPDVMCRSGIW NNKELTISNLYKLTEKVSPNYYDIAFECIGFKQSETIKKSLGMIRPKGEFICFGVFPEDY SPTLKVRRLFEKEITILGVRSFTKKDFKYAKSILDLHGSKLISRLCISVVSGENINAIMN DIENRNIDQVIVRMKR >gi|308164868|gb|AEHO01000035.1| GENE 49 53545 - 54408 935 287 aa, chain - ## HITS:1 COG:SP0141 KEGG:ns NR:ns ## COG: SP0141 COG1396 # Protein_GI_number: 15900079 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 282 5 281 287 213 44.0 4e-55 MSEKSLELGELFKELRLARGLKLKDVARENLSVSQLSKFENGQTMLAADKLLIAIQGIHM TFSEFGYALTQYQESDLFKIGNQLVNFQAKRDVEGLRDLLKNYRPRETYEVYHQLNKLVL KSAIHSLEPSFEITNEEKEFLTSYLFAIEEWTEYELYLFGNTLFILSDEDLIFLGKAFIE RDKLYKDLSEHKKRAELVLINLILVLVEHRDFYYASYFINSLEKMLNYQDMFARIVLNFL KKVMNYIENGKVDLSDIEAYINLIERLDNPTLVMFLRTNLEQIVNNQ >gi|308164868|gb|AEHO01000035.1| GENE 50 54796 - 55467 645 223 aa, chain - ## HITS:1 COG:no KEGG:LSL_1382 NR:ns ## KEGG: LSL_1382 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: ABC transporters [PATH:lsl02010] # 5 220 1 215 242 109 31.0 9e-23 MNSRLIKWELKKQQHTYLPIILCCFIIVAVFLGSFLYFMNQQVFGKDQTQWLALWGEIGL FYAQLFFPLLIAIIVNAVWYQELEQNSWHMSSLLPIKGDRLLIAKVITASFYSLLSQIIL IILYYLIACLAHFPISHVNPFTFIWWGLLGWGGSLSIIALQFFVSIMFSRFTSLIFALIL GLGNFVTLLMGPTIFNLYPYSQIAVGMRVRAYENMSFSEFGFS >gi|308164868|gb|AEHO01000035.1| GENE 51 55460 - 56200 286 246 aa, chain - ## HITS:1 COG:no KEGG:LKI_03870 NR:ns ## KEGG: LKI_03870 # Name: not_defined # Def: putative transporter, trans-membrane domain bacteriocin immunity protein # Organism: L.kimchii # Pathway: not_defined # 1 210 2 214 248 86 30.0 1e-15 MKQLRTEIKKYNRNRLWLPILVLFLFSIYWCSVSNNIQINKNSSNIFQTLVFNLYTINNL IIPFSVALLSYRMVMIDRKNRMFSVLFTNGGNEIGLFLSKYILGILILFIGFACQLIFTI LSSKYYHTSINHNELILFVVAMLLGSGTMLLIQLLLSFVIESPIIPIVIGLAGSFLSMLT SGLLSKQITIFIPWEYLSTLNPYTINDSGIHPFTNYQFYFSLVLIIHLLLLIISIWLVFK ERIIHE >gi|308164868|gb|AEHO01000035.1| GENE 52 56207 - 57154 281 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 9 312 1 307 318 112 28 4e-24 MNISDLSELTKEKIMTKSILSIRNLSKSFGGQKVLDNLNMEIKTGEIYGFLGVNGAGKST TMKIILGLLPKDRGEIIALGHSLPKNRSQVLPEIGALIEEPSFYPNLTGFENLQLIQELA NLPKENIKVAMEATGIYYAKDKLVRNYSLGMKQRLGISMALIKFPKFLILDEPTNGLDPD GIHQMRQLIRSLPQKFNMTVLISSHILSEIENLADTVGIIKDGHLIYEGSINRLLNQEKK YRLKVNDLEKAIHIIQHFDSNITITKDNDTLLLSLPDHAFVPDLITQLVHNELQIFEIYG VKKTLESVFLYLTKE >gi|308164868|gb|AEHO01000035.1| GENE 53 57411 - 58130 477 239 aa, chain - ## HITS:1 COG:alr7297 KEGG:ns NR:ns ## COG: alr7297 COG2274 # Protein_GI_number: 17233313 # Func_class: V Defense mechanisms # Function: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain # Organism: Nostoc sp. PCC 7120 # 13 239 380 619 713 89 27.0 7e-18 MHGQELYNDILSLQSIINMTNQLFSISSAVILIYLGINLVSLHRINMGDLVLFQTIFISL MSSVTQFQTSLIELSNLSVYSKKVQSLFTKDEQRQDKVIPNNDYILKAQDVSFGFYGNRQ VIKDFNLTIRPGEKIAILGESGSGKTSLLNVLLGVYKYQGDIYYGIKDFRKKLGVVTQNM NLTSGPLIKNLIGNSSITPKIMDEVNYAISAVNMMETIDKLPKKIFSNLFQNGKNLSGG >gi|308164868|gb|AEHO01000035.1| GENE 54 58426 - 58623 180 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805802|ref|ZP_07699839.1| ## NR: gi|309805802|ref|ZP_07699839.1| putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 09V1-c] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 03V1-b] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 01V1-a] putative lantibiotic mutacin-2 [Lactobacillus iners SPIN 2503V10-D] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 3008A-a] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 2062A-h1] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 2052A-d] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 09V1-c] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 03V1-b] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 01V1-a] putative lantibiotic mutacin-2 [Lactobacillus iners SPIN 2503V10-D] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 2052A-d] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 2062A-h1] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 3008A-a] # 25 65 1 41 41 77 100.0 3e-13 MIHYVRKLFDQIFYAVYIIRRCLTMEKLNHNAVTSLNEVSDSELDTILGGSRWQYYRKSK LKISY >gi|308164868|gb|AEHO01000035.1| GENE 55 59120 - 59875 616 251 aa, chain + ## HITS:1 COG:no KEGG:CD1869 NR:ns ## KEGG: CD1869 # Name: not_defined # Def: putative conjugative transposon mobilization protein # Organism: C.difficile # Pathway: not_defined # 1 251 118 368 443 391 88.0 1e-107 MVTGKCYQSNKRSYHQIRYQSDKLCKENNLFVIDEFYESYKRKYKTNGKSWYENEQFKKG TSWKSRLQFDIDRLLKQSKDWEEFLKKMAELGYEIKHGKHIAFKPKDKQRFTRAKTIGED YTEERLRERITENQNIKASPVKKRIGNVINMNTNAKVKESKGYEYWATKHNLNTMAESVV FIIEHGIKSVKQLDEYIEKAADERQNLQDKIKVIDIEIQKLSATMDKVHTVKKYRAYYKE YKANPSDKAFF >gi|308164868|gb|AEHO01000035.1| GENE 56 60116 - 60385 223 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIRSLKTLIMMAFLTDMTMTLRTVIILSQLMMWRTIFIAKKKPIQSVRRFVAKTKQFESI MFLSIIVIFLSILSYAFTLKAVHKFLLKQ >gi|308164868|gb|AEHO01000035.1| GENE 57 60605 - 60775 109 56 aa, chain - ## HITS:1 COG:no KEGG:CD1862 NR:ns ## KEGG: CD1862 # Name: not_defined # Def: putative conjugative transposon DNA recombination protein # Organism: C.difficile # Pathway: not_defined # 1 56 2801 2856 3011 110 96.0 3e-23 MEEKRNDNPLIEDVKRAIIDFCNREYEENHSYDEFNTLYPDLKHIGIAYTNTPDER >gi|308164868|gb|AEHO01000035.1| GENE 58 61152 - 61466 367 104 aa, chain - ## HITS:1 COG:MJ0866 KEGG:ns NR:ns ## COG: MJ0866 COG0537 # Protein_GI_number: 15669057 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Methanococcus jannaschii # 4 81 30 107 129 64 41.0 4e-11 MSDNPEVEGHMLVFAKKHFPTLELADQSSWYYIGEILNELGKRLRSQGYDGYNLLSANGV AAGQSVKHFHFHVIPRKKNDGINAWPNFETKPNNTSDFFEKVKF >gi|308164868|gb|AEHO01000035.1| GENE 59 61678 - 62019 203 113 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0105 NR:ns ## KEGG: LGAS_0105 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 2 111 167 277 279 70 47.0 2e-11 MLLANLHTLFLIINVVVIITCVFVALALLKEYMSILKGRSLIHLTSVAISISSLMIMLIF ILLAALPLIFNVESWNILGLFLEIASGIFLELVFVAAILFVISTVISQVTSKL >gi|308164868|gb|AEHO01000035.1| GENE 60 62079 - 62504 555 141 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0105 NR:ns ## KEGG: LGAS_0105 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 5 140 5 143 279 105 43.0 6e-22 MNEDSRVELIKLSVTQTKHYKRMVECLTFLLVTLLFSTLTFMNPYFMTKQLAKESNYVIV DRQINKKFNNLANVLEVEKKETNSALLNSKQTQPMARELVDYVIGLGWFKTDNSEIAHKI KKQIYKFDSNVSSGAIEVQKN >gi|308164868|gb|AEHO01000035.1| GENE 61 62512 - 63177 601 221 aa, chain - ## HITS:1 COG:no KEGG:LJ0105 NR:ns ## KEGG: LJ0105 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 217 1 217 219 208 49.0 2e-52 MARQKNMKRRRAILCSTFALLREKGIKNVSLKMIAERSNISKSLLQSYYPHKNKLITEII IGFKTTILRNLPQASFYSINEFAKVKAFIYLILQIGMTDKGISQILESILKDRNNKTVWD NILDDWLVANKIKDKLGTNEQVQVGLSFVVSGGTNLYFKRKELNLSAEDISNIMVKSFMT TFLNSSDQEINEAITEGHDMIVRFDMNKVFKIINSMFLEEE >gi|308164868|gb|AEHO01000035.1| GENE 62 63335 - 64324 1022 329 aa, chain - ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 13 321 10 316 317 279 45.0 6e-75 MNKEELHELLHPMKLIGLGGNQTLAKRIAKALNKELLETAVKHFSDGEIQVNITETVRGC DVYVIQSIQDPVNENFMELMIVLDALNRASAHSVTVVVPYMAYSRQDTKNRSREPITAKL LANLLQLTRIDDVVALDLHASQIQGFYNIPVDHLHALPILAQYFLDNGIVDRDSDSVVVV SPDHSGAKLARNFGSYFNAPIAIVDQRGARYDTEVHDMIGDVKDKTVIIVDDLIDTGSRI SSSTKSVLAAGAKKVYVAATHALLSQNAIDVLNQLNLEQIVVTDTIEHKKYPDRIVRLSV DRLLAKGIDYIYNDKSIHQIFDEQNRIHH >gi|308164868|gb|AEHO01000035.1| GENE 63 64413 - 65069 836 218 aa, chain - ## HITS:1 COG:STM3079 KEGG:ns NR:ns ## COG: STM3079 COG0596 # Protein_GI_number: 16766380 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Salmonella typhimurium LT2 # 3 115 54 167 318 78 33.0 1e-14 MKVKINDIELYYQKFGTGHPIILLHDYFQDGSIFDKLIAPLSLSYTVYVPDLRGYGMSQG ESTHYYQTDAEDMASFIRKVNIKKPYVLGFGSGGNIALALASQYPNMLKKLIVAGTYLND DGIDSVHVVISNLRHFVHRKQIDHPCNVDFNFDLNNLKRITIPTLAVVGEKDWVKVDHVR AYSDLIDNGRLIVMPRQTHDSYLIHSLKCIDLIKDFCK >gi|308164868|gb|AEHO01000035.1| GENE 64 65099 - 65905 716 268 aa, chain - ## HITS:1 COG:BS_yveR KEGG:ns NR:ns ## COG: BS_yveR COG0463 # Protein_GI_number: 16080483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 2 215 1 211 344 120 31.0 2e-27 MLDLPQLTVIMPVYNVEKYIGRALEALLNQKNRNFKLLIVNDGSKDKTRQIAESYSDKFL YFKLINKANEGVAAARNVALAHVDTPYFTFHDGDDWVDPDYTDFFINSFKRYPHVSLISC GYWIDKEKQKKSRSIDPKRESGHLTKKEAYFKIANVSTSPVKGYTWNKCYRLDVVRKHNI KFMGDIAFMEDEVFNIEYVSLSDGVYFTSKPYYHYWQRPDSLIHVTSGLKYIPDNVRATY RVWHKILKSLRHEKKKIRRKMPNKITNN >gi|308164868|gb|AEHO01000035.1| GENE 65 66040 - 67005 1142 321 aa, chain + ## HITS:1 COG:SP1027 KEGG:ns NR:ns ## COG: SP1027 COG4086 # Protein_GI_number: 15900898 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Streptococcus pneumoniae TIGR4 # 15 310 13 322 324 123 31.0 5e-28 MKKINLSIIAFISSLLLILAVNTKRASADDNSIMTLGVSLTPNQKKGTINTLNRANNGEN CKIVTISGKDLVKYLNPTGANFNNNSGVWSSALIQKQGNGNGINVHILPYNGHNNITTIT TNQYKNAAITAGISDANIYVTSAIPIDGSGALAGVYAAYAKNGIHLNQEQINAAQQEINT LSNITQQNKDKKGYSDAQLNNAIAGAKAEMAKKGNNLSDNDIRIILNNQLNINHLNNILT SQQKEQIIHLLIEIKKSGALNSKNFQQQASKLAAQIQSKAKDIFNKLNTQQNRNFIQQII DAIVNFFKSLFKFTIMLDKIK >gi|308164868|gb|AEHO01000035.1| GENE 66 67325 - 67777 158 150 aa, chain + ## HITS:1 COG:no KEGG:FI9785_p9785L.16 NR:ns ## KEGG: FI9785_p9785L.16 # Name: not_defined # Def: putative single-stranded DNA-binding protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 80 30 109 109 137 81.0 2e-31 MAVPRQDDRKEADYIRCLAFDKLANAIYQHCAKVQQFLCKGRLQVSTSIDEATKQVKYHH TVVVSNINFLHDPNISSPSIYFFKTIIMLITNTTIRLPYTEPKYTRGVISVFITVKYKTR KMAASTANVTLKTTKSLCLLPLKSTVIPIS >gi|308164868|gb|AEHO01000035.1| GENE 67 67564 - 67974 345 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805781|ref|ZP_07699818.1| ## NR: gi|309805781|ref|ZP_07699818.1| hypothetical protein HMPREF9213_0530 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0898 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0772 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0951 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0599 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF0523_1127 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0583 [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9213_0530 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0898 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9217_0599 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_0951 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0772 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF0523_1127 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0583 [Lactobacillus iners SPIN 1401G] # 1 136 1 136 136 202 100.0 8e-51 MEENSKAVTTNKVREKRRKNNSNLFYIQSFLILVGIVVQSILHGFESGYTLPLVAIFLLT ISISAFQEMGITVDFNGNKHKDLVVLSVTFAVLAAIFLVLYLTVIKTDMTPLVYFGSVYG SLIVVFVISIIIVLKK