Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:19:28 2011 Seq name: gi|308170620|gb|AEHR01000001.1| Lactobacillus iners SPIN 2503V10-D contig00027, whole genome shotgun sequence Length of sequence - 92782 bp Number of predicted genes - 96, with homology - 95 Number of transcription units - 43, operones - 23 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 77 - 136 5.7 1 1 Op 1 13/0.000 + CDS 173 - 1162 1298 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 2 1 Op 2 13/0.000 + CDS 1190 - 1984 974 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 3 1 Op 3 4/0.000 + CDS 2009 - 2938 965 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 4 1 Op 4 . + CDS 2940 - 3299 385 ## COG4687 Uncharacterized protein conserved in bacteria + Term 3304 - 3351 8.1 + Prom 3421 - 3480 11.8 5 2 Tu 1 . + CDS 3527 - 4900 1545 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 4994 - 5044 3.0 + Prom 4971 - 5030 14.9 6 3 Op 1 . + CDS 5095 - 5187 63 ## 7 3 Op 2 . + CDS 5208 - 5639 256 ## lhv_1140 ABC transporter ATPase component 8 3 Op 3 . + CDS 5687 - 6820 570 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 6859 - 6896 1.8 - Term 7064 - 7123 3.3 9 4 Tu 1 . - CDS 7199 - 8209 1352 ## COG2502 Asparagine synthetase A - Prom 8237 - 8296 5.1 + Prom 8498 - 8557 3.9 10 5 Tu 1 . + CDS 8676 - 9587 856 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 9588 - 9640 8.0 + Prom 9624 - 9683 11.1 11 6 Tu 1 . + CDS 9771 - 12485 3077 ## COG1511 Predicted membrane protein + Term 12528 - 12571 3.1 - Term 12593 - 12630 2.3 12 7 Op 1 . - CDS 12640 - 12984 355 ## LBUL_1767 DNA-entry nuclease 13 7 Op 2 . - CDS 13028 - 13519 459 ## LJ0652 hypothetical protein - Prom 13654 - 13713 9.9 - Term 13710 - 13763 2.6 14 8 Op 1 . - CDS 13778 - 15163 1178 ## COG0531 Amino acid transporters 15 8 Op 2 . - CDS 15153 - 15824 846 ## COG3442 Predicted glutamine amidotransferase - Prom 15913 - 15972 8.6 + Prom 15694 - 15753 9.8 16 9 Tu 1 . + CDS 15992 - 16768 856 ## COG2365 Protein tyrosine/serine phosphatase + Prom 16773 - 16832 6.9 17 10 Op 1 3/0.000 + CDS 16907 - 17815 813 ## COG1609 Transcriptional regulators + Term 17825 - 17870 3.3 + Prom 17839 - 17898 8.2 18 10 Op 2 . + CDS 17981 - 19642 1618 ## COG0366 Glycosidases 19 10 Op 3 . + CDS 19657 - 19755 62 ## gi|309803363|ref|ZP_07697458.1| neopullulanase 20 10 Op 4 3/0.000 + CDS 19709 - 21406 1423 ## COG0366 Glycosidases + Prom 21417 - 21476 4.0 21 10 Op 5 11/0.000 + CDS 21514 - 23787 2325 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 22 10 Op 6 3/0.000 + CDS 23772 - 24434 1000 ## COG0637 Predicted phosphatase/phosphohexomutase 23 10 Op 7 1/0.000 + CDS 24454 - 25557 1432 ## COG3839 ABC-type sugar transport systems, ATPase components + Prom 25576 - 25635 2.7 24 10 Op 8 19/0.000 + CDS 25661 - 26875 1900 ## COG2182 Maltose-binding periplasmic proteins/domains 25 10 Op 9 20/0.000 + CDS 26938 - 28287 1381 ## COG1175 ABC-type sugar transport systems, permease components 26 10 Op 10 . + CDS 28293 - 29162 826 ## COG3833 ABC-type maltose transport systems, permease component + Term 29182 - 29235 15.1 - Term 29178 - 29214 8.2 27 11 Op 1 . - CDS 29241 - 30620 1163 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 28 11 Op 2 . - CDS 30644 - 32056 1408 ## COG4690 Dipeptidase - Prom 32116 - 32175 10.1 + Prom 32043 - 32102 9.1 29 12 Op 1 . + CDS 32154 - 32375 267 ## gi|259501216|ref|ZP_05744118.1| conserved hypothetical protein 30 12 Op 2 1/0.000 + CDS 32388 - 32945 564 ## COG0431 Predicted flavoprotein 31 12 Op 3 . + CDS 32939 - 33499 655 ## COG0431 Predicted flavoprotein 32 12 Op 4 . + CDS 33517 - 34302 974 ## COG2365 Protein tyrosine/serine phosphatase + Term 34305 - 34343 -0.2 - Term 34292 - 34330 -0.2 33 13 Tu 1 . - CDS 34337 - 34876 426 ## LJ0553 hypothetical protein + Prom 34899 - 34958 6.0 34 14 Op 1 4/0.000 + CDS 35030 - 35749 785 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 35 14 Op 2 25/0.000 + CDS 35770 - 36615 951 ## COG1475 Predicted transcriptional regulators 36 14 Op 3 25/0.000 + CDS 36618 - 37391 788 ## COG1192 ATPases involved in chromosome partitioning 37 14 Op 4 1/0.000 + CDS 37375 - 38253 963 ## COG1475 Predicted transcriptional regulators 38 14 Op 5 4/0.000 + CDS 38268 - 38519 355 ## COG4481 Uncharacterized protein conserved in bacteria 39 14 Op 6 . + CDS 38532 - 39632 1469 ## COG0012 Predicted GTPase, probable translation factor 40 14 Op 7 . + CDS 39644 - 40420 874 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria + Term 40425 - 40468 11.2 - Term 40413 - 40456 11.2 41 15 Tu 1 . - CDS 40473 - 41024 384 ## COG1335 Amidases related to nicotinamidase - Prom 41075 - 41134 7.2 + Prom 41005 - 41064 8.9 42 16 Op 1 . + CDS 41107 - 41742 638 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 43 16 Op 2 . + CDS 41778 - 42866 962 ## COG1316 Transcriptional regulator 44 16 Op 3 . + CDS 42854 - 43486 551 ## COG0344 Predicted membrane protein + Prom 43490 - 43549 4.1 45 17 Tu 1 . + CDS 43660 - 44982 618 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Term 44983 - 45031 10.2 + TRNA 45041 - 45113 64.5 # Thr GGT 0 0 + Prom 45042 - 45101 77.4 46 18 Tu 1 . + CDS 45199 - 46017 762 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 47 19 Op 1 . - CDS 46054 - 46854 611 ## LGAS_0165 hypothetical protein 48 19 Op 2 . - CDS 46922 - 47365 371 ## COG2461 Uncharacterized conserved protein - Prom 47394 - 47453 8.0 + Prom 47465 - 47524 9.0 49 20 Tu 1 . + CDS 47553 - 48245 1098 ## COG0588 Phosphoglycerate mutase 1 + Term 48258 - 48305 10.3 50 21 Op 1 . - CDS 48274 - 48738 429 ## COG1078 HD superfamily phosphohydrolases 51 21 Op 2 . - CDS 48794 - 49651 726 ## COG1078 HD superfamily phosphohydrolases - Prom 49717 - 49776 7.7 + Prom 49704 - 49763 4.7 52 22 Op 1 . + CDS 49791 - 50222 394 ## FI9785_297 hypothetical protein 53 22 Op 2 5/0.000 + CDS 50287 - 50787 802 ## COG3343 DNA-directed RNA polymerase, delta subunit + Term 50846 - 50876 1.0 54 22 Op 3 . + CDS 50895 - 52517 2297 ## COG0504 CTP synthase (UTP-ammonia lyase) + Prom 52540 - 52599 3.6 55 23 Op 1 . + CDS 52649 - 53914 1434 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 56 23 Op 2 . + CDS 53973 - 54692 1031 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 54769 - 54805 7.5 57 24 Op 1 . - CDS 55163 - 56734 1292 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 58 24 Op 2 . - CDS 56755 - 58326 975 ## COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 59 24 Op 3 . - CDS 58356 - 58556 273 ## FI9785_p9785L.22 hypothetical protein - Prom 58620 - 58679 6.6 - Term 58815 - 58852 -1.0 60 25 Tu 1 . - CDS 58887 - 59060 145 ## gi|309805090|ref|ZP_07699143.1| conserved domain protein - Prom 59093 - 59152 5.7 61 26 Tu 1 . - CDS 59168 - 59455 361 ## LAC30SC_09460 hypothetical protein - Prom 59501 - 59560 9.0 + Prom 59444 - 59503 4.7 62 27 Tu 1 . + CDS 59548 - 60105 329 ## COG0194 Guanylate kinase + Prom 60113 - 60172 6.1 63 28 Tu 1 . + CDS 60248 - 60949 195 ## PROTEIN SUPPORTED gi|145223395|ref|YP_001134073.1| NLP/P60 protein + Term 60966 - 61013 1.2 + Prom 60994 - 61053 8.8 64 29 Op 1 . + CDS 61105 - 61641 402 ## LDBND_1928 hypothetical protein 65 29 Op 2 . + CDS 61550 - 62296 752 ## COG1376 Uncharacterized protein conserved in bacteria 66 29 Op 3 . + CDS 62362 - 63027 472 ## FMG_1337 hypothetical protein + Term 63073 - 63119 -0.2 67 30 Tu 1 . - CDS 63019 - 63525 302 ## gi|325913582|ref|ZP_08175947.1| conserved domain protein - Prom 63563 - 63622 8.0 + Prom 63570 - 63629 8.8 68 31 Op 1 56/0.000 + CDS 63699 - 64106 676 ## PROTEIN SUPPORTED gi|42518425|ref|NP_964355.1| 30S ribosomal protein S12 69 31 Op 2 51/0.000 + CDS 64122 - 64592 762 ## PROTEIN SUPPORTED gi|42518426|ref|NP_964356.1| 30S ribosomal protein S7 70 31 Op 3 . + CDS 64625 - 66715 2681 ## COG0480 Translation elongation factors (GTPases) + Term 66719 - 66763 1.9 + Prom 66782 - 66841 9.5 71 32 Tu 1 . + CDS 66880 - 69189 2432 ## COG3973 Superfamily I DNA and RNA helicases + Prom 69197 - 69256 3.6 72 33 Op 1 . + CDS 69310 - 70119 723 ## COG1072 Panthothenate kinase 73 33 Op 2 . + CDS 70132 - 70692 804 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 70707 - 70753 9.1 + Prom 70746 - 70805 7.2 74 34 Op 1 . + CDS 70834 - 72129 1407 ## COG2195 Di- and tripeptidases 75 34 Op 2 . + CDS 72149 - 73060 997 ## LJ0652 hypothetical protein + Term 73069 - 73108 -0.9 - Term 73051 - 73097 2.1 76 35 Tu 1 . - CDS 73124 - 74041 1061 ## COG2971 Predicted N-acetylglucosamine kinase - Prom 74168 - 74227 6.4 + Prom 74131 - 74190 8.1 77 36 Op 1 . + CDS 74213 - 75121 531 ## LJ0665 hypothetical protein 78 36 Op 2 . + CDS 75143 - 75985 936 ## LGAS_1627 hypothetical protein - Term 75983 - 76032 5.1 79 37 Tu 1 . - CDS 76035 - 76814 1073 ## COG0657 Esterase/lipase - Prom 76986 - 77045 8.9 + Prom 76878 - 76937 7.5 80 38 Op 1 . + CDS 76960 - 77559 674 ## COG0398 Uncharacterized conserved protein 81 38 Op 2 . + CDS 77563 - 78060 242 ## PROTEIN SUPPORTED gi|116514699|ref|YP_813605.1| acetyltransferase + Term 78185 - 78222 -0.1 + Prom 78151 - 78210 4.3 82 39 Tu 1 . + CDS 78305 - 79615 1617 ## COG0172 Seryl-tRNA synthetase + Term 79616 - 79666 10.9 + Prom 79935 - 79994 3.3 83 40 Op 1 2/0.000 + CDS 80019 - 81362 1224 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases + Term 81392 - 81437 5.9 + Prom 81365 - 81424 5.7 84 40 Op 2 3/0.000 + CDS 81446 - 83068 1397 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Prom 83303 - 83362 8.3 85 40 Op 3 . + CDS 83400 - 84206 452 ## COG1737 Transcriptional regulators 86 40 Op 4 . + CDS 84184 - 84693 513 ## LJ0638 hypothetical protein 87 40 Op 5 . + CDS 84698 - 85183 706 ## COG2190 Phosphotransferase system IIA components + Term 85204 - 85254 -0.2 + Prom 85236 - 85295 5.8 88 41 Op 1 1/0.000 + CDS 85326 - 85850 582 ## COG1309 Transcriptional regulator 89 41 Op 2 36/0.000 + CDS 85854 - 86909 969 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 90 41 Op 3 . + CDS 86932 - 87609 282 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 91 42 Tu 1 . - CDS 87612 - 88328 384 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 88381 - 88440 10.7 + Prom 88362 - 88421 7.9 92 43 Op 1 39/0.000 + CDS 88475 - 89344 1025 ## COG0226 ABC-type phosphate transport system, periplasmic component 93 43 Op 2 38/0.000 + CDS 89347 - 90261 858 ## COG0573 ABC-type phosphate transport system, permease component 94 43 Op 3 41/0.000 + CDS 90264 - 91157 752 ## COG0581 ABC-type phosphate transport system, permease component 95 43 Op 4 7/0.000 + CDS 91157 - 91924 226 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 96 43 Op 5 . + CDS 91936 - 92610 256 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 92707 - 92748 4.2 Predicted protein(s) >gi|308170620|gb|AEHR01000001.1| GENE 1 173 - 1162 1298 329 aa, chain + ## HITS:1 COG:CAP0066_2 KEGG:ns NR:ns ## COG: CAP0066_2 COG3444 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 163 329 1 168 168 200 57.0 4e-51 MVGIVLASHGGFADGIFQSAEMIFGKQENLAHVILKPDEGPDDIRKKMEDAIASFDDSEQ VLFIVDLWGGTPFNQANNLVKEHEDTWAIVSGMNLPMVVEALGQRLASNNAHDIAKAIVK PGRDGIKTKPESLMPVEKVESNVSAKHQAAIPEGTVIGDGHIKYLLARIDSRLLHGQVAT SWTKSLAPNRIIVVSDGVSKDKIRKTMIREAAPSGVPANVVPIDKMLEVTKDTRFGGTKA LILFENPEDALKAIKGGMDIKTLNIGSMAYSAGKVNVNTVLAMDQKDVDAYRELEKLGVS FDVRKVPADNKQDMNELLNKAQKLINEQK >gi|308170620|gb|AEHR01000001.1| GENE 2 1190 - 1984 974 264 aa, chain + ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 264 1 268 268 263 69.0 2e-70 MNAIQIILVVVVAFLAGMEGILDQFQFHQPLVACTLIGLVTGNLELGLLLGGSLQMIALG WANIGAAVAPDAALAAVASTIILIQGGQGSKGIGAAIGIAIPLAIAGLFLTMIVRTISVA IVHIMDKEAEKANWRAIDVWQCVAIALQGLRIAIPAALLLFIPASVVKAGLAAMPAWLND GMSIAGGMVVAVGYAMVINMMASREVWPFFVIGFCVAALQGLTLIALGGIGVSLSIMYLA LEGSGSKSSNNGSGDPLGDILDNY >gi|308170620|gb|AEHR01000001.1| GENE 3 2009 - 2938 965 309 aa, chain + ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 8 309 4 303 303 432 73.0 1e-121 MSETAKNKIILSKKDRWNVCWRSTFLQGSWNYERMQNGGWVYSLIPALKKLYPNKEDLSA ALKRHLEFFNTHPYLAAPVIGVTLALEEEKANGAKVENAALQGVKVGMMGPLAGVGDPVF WFTVRPILGAIGASLACAGNILGPILFFVVWNVIRIGFLWNTQEMGYKAGTKITEDASGG LLQKITRGASMMGMFILGALIERWVNISFKPIVSSVKLAKGAYIDWNHISGGAKGIHQVL TQWNMGKGLSLEPIKVTTLQGNLDALIPGLAGLLLTFLCMWLLKKKVSPIAIILGIFVVG VLGHVVGLL >gi|308170620|gb|AEHR01000001.1| GENE 4 2940 - 3299 385 119 aa, chain + ## HITS:1 COG:lin0146 KEGG:ns NR:ns ## COG: lin0146 COG4687 # Protein_GI_number: 16799223 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 114 1 114 129 114 48.0 5e-26 MVQSINTKSEYHVDATWFRGMSVYGQVLIGDVGFEFYSSKNVNDFVQIPWTEVKLVIADV YFEGKYIPRFKIQTRNSGDFIFATRHPKDTLRAIRTHVSDEKMRKSRTFWQIIKNFLKR >gi|308170620|gb|AEHR01000001.1| GENE 5 3527 - 4900 1545 457 aa, chain + ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 457 1 453 459 473 56.0 1e-133 MQNNSKKIQLKRSMTAGQMEMISLGGAIGVGLFMGSTSTIKWTGPSVLLAYMLVGLILYI VMRALGEMLYVNATTGSFADYATHYISPLAGYLAEWSNIFEYIMVGISEVVAVTEYLKYW WPKTPTWIAGIIVIVFLVLANLASAKAYGTLEFWFSMIKVITIVLMIVVGLAVILLGLGN KGVPIGFSNLWSHGGFFAHGIKGFFFSLAIIVGSYEGIELIGISAGEVMDPHKAVVKSVK SVLWRILIFYVGAIFIIVCIYPWNELKAIGSPFVETFTKVGIPFAAGFINFVILTAALSG ANSGIYSSSRMLFRLAHEGHAPKFFGKVSKRVVPNKAILGISAGILIGFILNLIFSTISK SASSLFVLIYSSSVLPGMVPWFVILIAELKFRKENPKQMAQHTFKLPLYPYSSYFAFSML FLIIIFMFINPETRLSVIVGAAVLLFATILYFIRKKK >gi|308170620|gb|AEHR01000001.1| GENE 6 5095 - 5187 63 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSDYKKINSAVGGSERKLEKEFQSLEDIIL >gi|308170620|gb|AEHR01000001.1| GENE 7 5208 - 5639 256 143 aa, chain + ## HITS:1 COG:no KEGG:lhv_1140 NR:ns ## KEGG: lhv_1140 # Name: not_defined # Def: ABC transporter ATPase component # Organism: L.helveticus # Pathway: not_defined # 1 134 1 134 537 216 92.0 3e-55 MRAVLKELNSKYKFEYFLFLGMNIINTCIETSNIFLEGMLINSLVYKADRISFIHNVVII IALNVIRLFLSFFINKIQILNYRKINIDVNDTIIKKLYSKDTLEVLKLDPIQTADRITED TNEILNFLFQTVNQIISIIFPRL >gi|308170620|gb|AEHR01000001.1| GENE 8 5687 - 6820 570 377 aa, chain + ## HITS:1 COG:HP1082 KEGG:ns NR:ns ## COG: HP1082 COG1132 # Protein_GI_number: 15645696 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Helicobacter pylori 26695 # 36 364 199 530 551 80 25.0 5e-15 MILLPAYIILYLILKPKIFKINLELRQVYNEYFSGFAEWLNRYVEIKGNKREEREYKRWK KTQASLLNITRRNFFLNLGMSTGEIVLQLIFQLILFINGGLAVISGSMTIGSFSVLFQYF NQLLGQVDALFSILFNFESFRVAYMRIDQLMSIMNEVDGEIVITKVENIQVHNFNISLDA QKTLFSKNLTCSFNNSGLYVVRGRNGIGKSTFLRTITGLYTPAKKGTILINNIDIDLINK KKLREDNISCLFQDTILPNCVVREYLDMYVNESNENCISGYQYFPKVFSSSQFNIKTVLD KKMTELSTGEIQLVKLYATILKNKAHCFLLDEPLANIYPELQSYLLSLLNEIAQNNLVII ISHDLGIEEKTKNIRIR >gi|308170620|gb|AEHR01000001.1| GENE 9 7199 - 8209 1352 336 aa, chain - ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 9 336 3 327 327 397 60.0 1e-110 MPLIIPKDYVPKLNIRDTEAAISIIRETFQDKLSTELTLQRMSAPMFVEKSTGLNDNLNG IERPVSFDIKNIPDDQIEVVHSLAKWKRFALKRYNFPMHEGLYTNMNAIRRDEDLDNFHS IYVDQWDWEKIIKKEERTEETLKNTVRKIFAAIKQTEQYVRKIYPGSIYRLPDQISFVTT QELENRWPELSPQEREDKIAEEQKAVFLMKIGDKLEKSGKPHDGRAPDYDDWQLNGDIIF WYEPLHCKLEVSSMGIRVSETSLKEQLVKANAQDREQLPFHKMLLNGDLPYTIGGGIGQS RLCMLLLAKVHIGEVQASIWPKEIADQCEKNNIHLL >gi|308170620|gb|AEHR01000001.1| GENE 10 8676 - 9587 856 303 aa, chain + ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 4 290 12 298 306 167 37.0 2e-41 MKQQKKLWIFLVIISCNLWGISGLCAKRVFDLSTQVSPITITQIRMLISGLFLLLLAQLT GKKPIKILYSRKNIIDIILYGLFGLIPIQLFYFIVVQKSNASIATILQFMGPFFIMFYMV VFEHQFLRRLDIVAALVAFMGIIFIATHGNFSKISLSPEVLFWGFLSALGVATNTLIPRP LLKRMDSVTLIAWSMIATGLMMLIAYPSQILIPKDSRVIILLVVIIILGTILPFYCMLNS LRYIKPSTASILDAFEPISATLGSVFVFNLTLKPIDWLGTILVILAVIAICYQPKSKMKS IRN >gi|308170620|gb|AEHR01000001.1| GENE 11 9771 - 12485 3077 904 aa, chain + ## HITS:1 COG:lin2460 KEGG:ns NR:ns ## COG: lin2460 COG1511 # Protein_GI_number: 16801522 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 12 887 14 898 927 407 31.0 1e-113 MKKIKQKLSQHNLVFMIMFAVAILAPVLYSLSFIKSVWDPYAGAKNLPIAVVNNDQAVNY NNRKLAVGDKIVSQLKHNKQMKWLFVTEEEAKKGLQNRKFYTVVTIPNDFSKNATTVLTS HPQKMKLYYKTNDSLNYLGSTMSDMALIRLNGKVRSSVTKAYANAMFDQLRILGKGMHKA ANGAKQISTGMISLQDGSKKYVAGVSKISKGMQILRVSVQPLATGSKKLVEGSSKLYTGI NKYTNGVSKLYLGSEKLIDATPILTQGINEFNTGLFAYTSGVGSLSSGLSKLSANSYRLR AGGRSLLTASNNFDLLNVGSQKVNAGVSKFNSKLSDSNLLGTLNGALSLQGQVFQLESQL ATVQETLKVLKSLDLLSIVKSMADIKQYAEKLSQAKNIDQAINYSDQNAAKADQIAQLVN SDSQINGSTKQKILGLVKDIKTNAQAGQASLDAYVGDSVVPLLISLEGMQSKLSPTQLQG LSSQIANIESALVGAKKLLSETKGLLSKVSDNKDMLNNMPDQLKKLSAATSQIAAGTQQL VDSKSKIKQLVSGIDEYTDGVDMAMSGAATLDANSAKLLSGFDKLKLGFSQYAGGIVQIN GGLKLLDLNSKTLLSGSNQLNVALIQLNEKVPVLLSGIDSLANGSSQLNSKSSILLQGIN KLRQGSGTLSDKLSQGADKLNSTQAADANSDMFSNPAELKHDTVSVVPNYGHALAPFIMA TALFIGVLILLVEFPANRRMTEITSCRSLILREFKLAIIACLGMVLVQNIILIVSGLKVF NVVELFTICIAYTLAMLGIMQLLTFMFGRWGLLPGLLLFVLQIGGAGGMFPIEVTNSFFQ TIHQFLPMSYAIAGLRQAITSGLGTGYFMSNLMVLILLAIVAYVGLVIAIVYKFTNTATE TVTN >gi|308170620|gb|AEHR01000001.1| GENE 12 12640 - 12984 355 114 aa, chain - ## HITS:1 COG:no KEGG:LBUL_1767 NR:ns ## KEGG: LBUL_1767 # Name: not_defined # Def: DNA-entry nuclease # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 4 66 218 280 281 96 74.0 2e-19 MQDKKVIYQAKPIFRGSELMARGVHLQAISTDKSLNFNVYIFNVQPGYKFDYQTGRVAAD KDMYVSFNNQKFNNFDYYHAKVKQPNDQTFIHKISHSKIYIFFKEKLNALLQYN >gi|308170620|gb|AEHR01000001.1| GENE 13 13028 - 13519 459 163 aa, chain - ## HITS:1 COG:no KEGG:LJ0652 NR:ns ## KEGG: LJ0652 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 36 161 73 198 282 115 51.0 4e-25 MLSAGHNLTLTHKANATEISATKDIRTQTLGIKNYKLESLDFISGNQAIIELNNNHANLN PNDWQEHKIVYKRIDQFNRATGAKTAFLSKSNIDSLSKGRVKQYINPSGWHPNLPDQKIY NRGHFIAYSLSKGMDKMGKYSPNLQRGDQNNRKNLFTQTDFFK >gi|308170620|gb|AEHR01000001.1| GENE 14 13778 - 15163 1178 461 aa, chain - ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 20 457 22 460 463 426 51.0 1e-119 MPYNLLRKEKLSRYINTDKHFVKTIGAFELLTLGIGSVIGTGIFILPGTVAATKAGPAVT ISFVIAAFVCALCSMCYAELSASIPIAGSAYSYGNILYGEFIGWILGWALILEYMLSVAA VSTGWSSYCNSLLSSFNWQLPHFLSGPFNPAQGTYVNLLAILSVIFIAALLSKGMKSSLK FNNIAVLLKIGIICVFIIVGLFYIKPKNYTPYFPFHFSGIFKGATTVFFAFLGFDVISAS AAEVKKPEKNMPIGIIGTLIIAVLLYIGVSIVLTGMISYNKLDVANPVAFALKSVNQGWI ADCLSIGAIIGMSTMMLSMIYSSSRLIYSIGRDGLLPNFLGKINTVGLPKNALIVVTIII ALMGGLFSLDELTSLVSIGTLLAFTFVSFGVILIRRRTDIPSGTFKVPLYPFIPLLSGIC CIGMMTFLSKRTFIFASIWFSIGILIYLLYGYKHSKINQIK >gi|308170620|gb|AEHR01000001.1| GENE 15 15153 - 15824 846 223 aa, chain - ## HITS:1 COG:SPy1034 KEGG:ns NR:ns ## COG: SPy1034 COG3442 # Protein_GI_number: 15675031 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 6 208 18 222 263 174 47.0 1e-43 MNKSSIKIAYLYEDLMNTYGDSGDVKIIKFLLKKAGYETEVDNVSLGTNFDASKYDFVFF GGGQDLEQTVVAKDLPRHKQTLQKYIESGNPMLCICGGYQLLGSYYKTNAGITIKGLDIV PIHTVFKADKRMIGDTHYITQWGEVRAFENHSGQTYFDNDKLKPLGKMIEGYGNNPQDGV EGMRYKNLIGSYSHGPLLKNENIANALVDKIITRYHRRTEHAL >gi|308170620|gb|AEHR01000001.1| GENE 16 15992 - 16768 856 258 aa, chain + ## HITS:1 COG:lin2049 KEGG:ns NR:ns ## COG: lin2049 COG2365 # Protein_GI_number: 16801115 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 1 186 73 248 326 93 36.0 4e-19 MNDRLIILDGAVNFRDLGGYVAANGRSVCWQKIYRSDRLDNLTMQDMEILAQKHIVTDCD LRTSYEQSYWQDRLWDGVAHYDCHIYNEEDITYENQITTETVNNLINSLPVPQGIVGRRY QKILLDKTGQMALKRVFQEILSLDENDALVFHCTAGKDRTGLVAAVILLGLGVKEEDIIA DYLLSNELYLFSIKHTLPTDDDLQNIIERMNLNGVDALSIQTIIQTINQGFGGFDNYFLK VLNFSKADLSEFRNKLTV >gi|308170620|gb|AEHR01000001.1| GENE 17 16907 - 17815 813 302 aa, chain + ## HITS:1 COG:BS_yvdE KEGG:ns NR:ns ## COG: BS_yvdE COG1609 # Protein_GI_number: 16080516 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 300 16 315 316 299 49.0 4e-81 MTVSRVINHPEQVTKELRSLVEKAMKTLHYSPNSAARALAKNRTNVVKFIILENIDTTEP YYMNLLFGITQGLNRHQYALQLLTSVDEITKGNADGYIITGARSSDSEWLDKLDKPFVLF GENRYGYDYVDTDNKVGEQIATQYALNKNYQSIIFIGINEKEAFEYSREAGYINTLQSHN KVPKIFRLPNHSHSAQHFIDEHWKEFAHNTCFICASDRLATGVVRAIIAKGGEIPKDFGV IGFDGIFLDQVSHPKLTTVKQPIIKLGELLSDMLLQKISQSGAQQGELLIEPTLIKRDTT RN >gi|308170620|gb|AEHR01000001.1| GENE 18 17981 - 19642 1618 553 aa, chain + ## HITS:1 COG:BH0872 KEGG:ns NR:ns ## COG: BH0872 COG0366 # Protein_GI_number: 15613435 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 4 520 5 519 559 362 36.0 1e-99 MANWYDRAIIYQIYPKSFQDSNGDGIGDLNGIRQRIPYLKSLGINAVWLNPVFVSPQVDN GYDVSNYYAIDPSMGTMEDMENLLSELHDAGIRVIMDFVLNHTSYQHPWFQDAIHNKDSI YRDYYIFAKGKDGKEPNNWGSFFGGSVWEKDPAGTDEYYFHLFDKKMPDLNWKNPEVRHA MLDVAEFWLKKGIDGLRIDAFIHIGKADLRQNYPTDSNDDQPIVAEPFFANLSQVQKWLR PFCKQIKADYPDTLLLGEAASANVNLAVDYTLPRNELMDTVITFRYFTEDLTKLDESFST RYQPRDLDIPAFKQNQVVWQQTLSNVSLPTLYWNNHDMSRVATRFAKDEQQVKGLAMLMY LQRGIPVIYYGEELGLKNLHFDTAEPFNDITVDEFLASAIKAGKTKEQALEMVSKMHKLA ARNVMPWDDSDNSGFTTGEPWNVGVPANADNVAGEENDNNSVLNFYRQLIDLKKTDLFTN GTYYLFDTNKYTYVYERDLEDEVGIVAVSLSSKKEMIELPIGNYDIKLKTGTCELVNNQL TLAPGSGVVLIKK >gi|308170620|gb|AEHR01000001.1| GENE 19 19657 - 19755 62 32 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309803363|ref|ZP_07697458.1| ## NR: gi|309803363|ref|ZP_07697458.1| neopullulanase [Lactobacillus iners LactinV 11V1-d] neopullulanase [Lactobacillus iners LactinV 09V1-c] neopullulanase [Lactobacillus iners LactinV 03V1-b] neopullulanase [Lactobacillus iners LactinV 01V1-a] neopullulanase [Lactobacillus iners LEAF 3008A-a] neopullulanase [Lactobacillus iners LEAF 2062A-h1] neopullulanase [Lactobacillus iners LEAF 2053A-b] neopullulanase [Lactobacillus iners ATCC 55195] neopullulanase [Lactobacillus iners UPII 143-D] neopullulanase [Lactobacillus iners UPII 60-B] neopullulanase [Lactobacillus iners SPIN 1401G] neopullulanase [Lactobacillus iners LactinV 11V1-d] neopullulanase [Lactobacillus iners LactinV 09V1-c] neopullulanase [Lactobacillus iners LactinV 03V1-b] neopullulanase [Lactobacillus iners LactinV 01V1-a] neopullulanase [Lactobacillus iners LEAF 2053A-b] neopullulanase [Lactobacillus iners LEAF 2062A-h1] neopullulanase [Lactobacillus iners LEAF 3008A-a] neopullulanase [Lactobacillus iners ATCC 55195] neopullulanase [Lactobacillus iners UPII 143-D] neopullulanase [Lactobacillus iners UPII 60-B] neopullulanase [Lactobacillus iners SPIN 1401G] # 1 31 1 31 582 65 100.0 9e-10 MQLSAISHRPDSEDAFLYDKDHLRIRLHTAKK >gi|308170620|gb|AEHR01000001.1| GENE 20 19709 - 21406 1423 565 aa, chain + ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 14 562 31 582 584 540 50.0 1e-153 MIKIIYVLGCILLKNDIAKVTVFYNDPYMFMPDKEGKYIFHYHIKKMHLISKGQVHDHWG VTLTAQYHRIQYLFEIQDTSGRKIFLTDRGFRTACKEGLNKTQNYYRLPYFHEIDMVKTP EWVKGTVWYQIFPERFSNGNKSNDRPNVKDWDPQTHPGREDFYGGDLQGVINHLDDLREL GVNGLYFCPIFKASSNHKYDTIDYKEVDPDFGDKGLFRQLVQEAHKRGMKVMLDAVFNHI GVNSPQWHDVIKNGSKSKYADWFHINYFPVEPYHDPTKGQGEPPYDTFAWEPHMPKWNTA NVEVQNYLLDIASYWIKQFDIDAWRLDVAPEVDHNFWRLFRSKVDSLKKDFYIVGEIWHS AQSWLDGDQFSSTMNYPFTQQIEDHFLLGTKTSHQMVELLSDQLMLYRAQTNQVMLNTLD SHDTPRILTMANGDKKLVYQTIAFTFMQTGSPCIYYGTEMGMTGGPDPDCRKPMDWSHKG DEFWQKIAGLVKFRLQNARILGKGNTRMRVTEDGLIRIKRTESGQSILGYFNTTDKPVSC KMKAVLSQNFANDILEPHGFVIGYN >gi|308170620|gb|AEHR01000001.1| GENE 21 21514 - 23787 2325 757 aa, chain + ## HITS:1 COG:NMB0390 KEGG:ns NR:ns ## COG: NMB0390 COG1554 # Protein_GI_number: 15676304 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Neisseria meningitidis MC58 # 3 756 4 751 752 851 58.0 0 MKRIFEVDPWKVTSHIFNPEDKRLQESMTAIGNDYMGIRGNFEEGYSADGLQGTYLAGVW FPDKTRVGWWKNGYPEYFGKSLNAPSFINVEITVNGERVDLAKSKFSDFYLSLDMHQGLL TRSYVYEGKDVKVKFEFNRFLSNKIKEAALIDIKATVLEGSAKIKFNAKIDSNVVNEDSN YDEHFWQPLGEDGEGRTVQVITKPNPYEGVPQFTVLLKQGLKANGEKIEGKVTTTTGVLS ETVEIELNENDTYELEKDVVVVTSRDVEPAEQAKKATELLDAVQSESFADNLADHTAIWE KRWEQSDIVIAGDEAAQQGIRFNILQLFMTYYGEDRRLNVGPKGFTGEKYGGATYWDTEA YIVPMYLAVTKPEVTKALLEYRHEQLPGAYHNAKQQGLKGALFPMVTFNGIECHNEWEIT FEEIHRNADIPFAIYQYTNYTGDDSYVKDEGMDVLVGTARFWADRVHFSKRKGKYMIHGV TGPNEYENNVNNNWFTNTMARWLIGYTLERLPKATAEAQKRVAVTDEEKAKWQDIVDNMY LPEDKELGIFVQHDTFLDKDLRPVSEIEDQRPINQNWSWDKILRSPFIKQADVLQGIYFL NDHYTMEQKEKNFDFYEPMTVHESSLSPCIHSILAAELGKKEKAVELYERTARLDLDNYN NDTVDGLHITSMSGSWLAIVQGFAGMRYDADHLKFNPFVPDKWNHYSFKLNYRGRLIEVY ADHKEIKVSLLKGADLEIIVKGDKVQLKEGETQCLKA >gi|308170620|gb|AEHR01000001.1| GENE 22 23772 - 24434 1000 220 aa, chain + ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 2 219 1 218 226 191 46.0 7e-49 MLKGLIFDLDGVLTDSARYHLAAWSQLAEKLGIHLDAKAGDGLRGLSRMDSLNLILKFGH QEDKYTEAQKEEFAAEKNSLYVESIKAMTASDILPGIEQLLTDAKKQGLKLAIASASKNA PTILNQLNIMDKFDAIVDPSTLHKGKPDPEIYQKAQELLGLESDEVISFEDAAAGVASIK AAGQFAVGIGDEKIMAAADYIVSDTGKLRLEEIEAAFDQK >gi|308170620|gb|AEHR01000001.1| GENE 23 24454 - 25557 1432 367 aa, chain + ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 367 1 377 377 511 64.0 1e-145 MVEVDLNHIYKKYEGNDRYSVNDFDLHIKDKEFIVFVGPSGCGKSTTLRMIAGLEDISEG TFEIDHQVMNDTAPKDRNIAMVFQNYALYPHMTIYDNMSFSLKLKHYAKEEIDKRVKHAA KILGLEDYLTKRPSELSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAKLRVTMRAEIAK LHQRLGTTTIYVTHDQTEAMTLADRVVVMSVGEVQQIGTPLEVYNKPVNMFVAGFIGSPQ MNFFNVHYKDGYISDGKGLNIEVPAGKASMLESKGYADKDLVFGIRPEDIHSEEAFLETW PHAVIDSEVVVSELLGATIQLYQKVNGTEFVANVNARDYHKPGDKVKMGFDVNKAHFFDK DTQKAIR >gi|308170620|gb|AEHR01000001.1| GENE 24 25661 - 26875 1900 404 aa, chain + ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 1 402 1 407 410 316 47.0 6e-86 MSLLKKLGVSSVVALAAVSLAACGSKKDADKSAESSKPLTLWVDTQQVGYYKKIVKEFNK KYPKIKVRVTQSPNGSAQAKTDVGKDPAKAADVFEVPNDQLGQMAESGYINPLSPDAVKQ IKADNVPEAYKGVEWKGKVYAYPFAEQAQTLYYNKSKLSASDVKDWKTLTSKGVVATDFT NAYTMFPVFFTAGNKLFGANGEDPKGSTVASENGVAALKWFAEQKGNKGVMQTSNGLNQL KKDKAQAILDGPWNAANIKKILGKNFAVTVYPKINVAGKDAPMQAFLGIEGFAVNSHTSN AKNATLLAAFITNKAAQLVAHKEAGQIPVNKAAQASDEIKNDDVAKAVIAMAKKQSVLMP KLSQMAIFWDGASPLISGAYDGKIKADQFKAQLDKFAAKISKKN >gi|308170620|gb|AEHR01000001.1| GENE 25 26938 - 28287 1381 449 aa, chain + ## HITS:1 COG:L128696 KEGG:ns NR:ns ## COG: L128696 COG1175 # Protein_GI_number: 15673666 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Lactococcus lactis # 1 449 1 452 452 492 60.0 1e-139 MFKKKHVAPEATFGETFAKGDIATKLSFFLMGVNALKHKQWVKGLSFLVTEIVYFVWLVL SGISALSMLSNLGKIKKKQVVFDKAQGIYLTKQPDNSVLILLFGILAILLTIGFIYLYYI NLKSNRNLYVLDRDHKHIPTNMEELASLLNTRLHSTLMFLPILGILLFTVLPTVFMISMA FTNYDSHHSIGFSWTAFSAFGSVLSGDLAGTFFPVLGWTLIWAVAATVTTFFFGVLLALL IESKGIKHKNFWRTIFVITFAVPQFVSLLMMAQFLDLQGPLNSLLKMVGIHAIHFIDDQA SPLVARITVIVVNMWIGVPVSMLTSTAIIQNLPQDQIEAAKIDGASAVQIFRYITFPQIL FVMSPALIQQFIGNINNFNVIFLLTGGKPFNNNYNGAGSTDLLVTWLYKLVFGQQQRYNA SAVLGILIFIISATVSLIAYRHTNAFKEG >gi|308170620|gb|AEHR01000001.1| GENE 26 28293 - 29162 826 289 aa, chain + ## HITS:1 COG:L128697 KEGG:ns NR:ns ## COG: L128697 COG3833 # Protein_GI_number: 15673667 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Lactococcus lactis # 5 289 1 285 285 335 64.0 4e-92 MSKKMKSYSAQRRLSLALRYLLLGFLAILWILPIVWIILASFSFNNTGFVSEFWPEKFTL DNYIGIFTNNQYPIVNWIINTLLVAIASAILSTFITISVAYVLSRLRFGFRKPFLQIALV LGMFPGFMSMIALYYILKALNMLNLVGLLLVYVGGSGLGFYIAKGFFDTMPRAIDEAAEI DGATAWQVFIHIGLPLSKPMIVYTALTTFMAPWVDFIFSGIILSTSGNSKNYTIAYGLYN MLTSSKGASTSNFAQFIAGCVIIAIPITILFMIMQKFYVSGITAGSDKG >gi|308170620|gb|AEHR01000001.1| GENE 27 29241 - 30620 1163 459 aa, chain - ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 12 459 56 506 506 409 49.0 1e-114 MSNFVFKTNSINNLESYYDAIVIGSGGAGLSAAIQAHELGLKVAILEKNNKLGGNTARAS SGMNAAETNIQYQQGIIDSMTKFYQETLQGGGQLNDPDMLHFFVEHAPLAIAWLKDHNIL LNELTITGGMTIKRTHRPASKEPIGNFLITNLLKEITKQHINVFNNAKVVELIHNDKDFA IKLENGQLISAKVVILATGGFGASKEIIKKYRPDLLSYKTTNQDGSTGDGLKLATKIGAQ LIQMNFIQVHPTAQTDNQHTYLIGEAVRGEGAILINQAAARFVNELDTRKIVANAITNLH EDGAWLILDQEIRNHVKALEFYDAVGLVKTGQTISELANAISISPQALIKTIQRWNQAIA QNNDVDYHRTTGLERPIATAPYFAIHVHPAIHYTMGGIHIDQHARVLDISGNIIKGFYAA GEVTGGLHGNNRIGGNSITETIVFGREAAIQAAKYILSK >gi|308170620|gb|AEHR01000001.1| GENE 28 30644 - 32056 1408 470 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 7 467 8 473 474 284 35.0 3e-76 MIKKVGRSACTSILIGKKATIDQSIIIGRNEDCKTAWPKHLAFNQHQVKINNIFKSKANK FTIDLPSEIFSYSSTPEWTDQYGLFEEDGFNEYHVAMSATESAYANERVLACDPFNEETG ILEEAMITVVLPYIKTARDGIKRLGNIVETHGAAEANGILFADKNEAWYMEIGSGHHWVA QRIPDDSYAVVANQLSIQIIDFNDSDNFMYSNNINQFVIDHNLWPQDKPFDFRRIFGTHD DSDLTYNTPRVWIGQKILTPSVSNQPQSFELPFIQKPDHPISIEDAQRVLSDHYNGTPYD LTKAKNVNNSTFRPISIATTQESHLLQLKDQNMTQWLALGIASQSVYIPFYPQGTIVPNL FKYGKKEYSANSAYWVFKLAGTLVDRNWTKYSPYLINTQKEVRYTLKKIRYQYDQKLVNE TQQNKVIDIVNQANKEMAQVAIKAFKKLISQLITLQTADSPLSFKIDPNL >gi|308170620|gb|AEHR01000001.1| GENE 29 32154 - 32375 267 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259501216|ref|ZP_05744118.1| ## NR: gi|259501216|ref|ZP_05744118.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_03320 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0713 [Lactobacillus iners UPII 143-D] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0713 [Lactobacillus iners UPII 143-D] # 1 73 1 73 73 115 100.0 8e-25 MEDNKKTIVLKFNTEEHTIDMNFSPDLTDEMEIGYILSSSFLSFAAHQGVSKEVLHDIID DQYSEFLSQNNED >gi|308170620|gb|AEHR01000001.1| GENE 30 32388 - 32945 564 185 aa, chain + ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 180 1 183 187 156 44.0 2e-38 MKIVALVGSNAKFSYNRELLKFIQKHYIDNYEIKLAEIKNIPLFCEGLAEPDSVKNLANQ ILDSDMVIIATSENQHSVSSALKSVIEWLSSVEHPFLNKPVMVIGVSSQHTGSARAQVRL KNVLASPGVGAIVYNGNEFMLGNASEKFDEDGNLDSATVEFLDKFWHQFMDFYQTINGRK LDNQC >gi|308170620|gb|AEHR01000001.1| GENE 31 32939 - 33499 655 186 aa, chain + ## HITS:1 COG:L171116 KEGG:ns NR:ns ## COG: L171116 COG0431 # Protein_GI_number: 15672349 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Lactococcus lactis # 2 177 1 172 270 139 46.0 2e-33 MLKLIAIVGTNAEFSFNRFLCQYIAKRYGDKFNIEVCEINDLPLFSKDDYPNEAVQNFRK KLRLADGVIIATPEYDHAIPAALKSAMEWTGKHSLGSGNDVMRLKPTMVVGTSYGVQGAS RAQEDMREILLSSDEGALVLPANEILIGYAATNFDKQSHDLINKTIIKQLDVAMDNFYQF INQWNK >gi|308170620|gb|AEHR01000001.1| GENE 32 33517 - 34302 974 261 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 14 258 53 297 298 123 31.0 3e-28 MQEPIVLDHIKIPNARDLGGYLGADGRKILKKRLLRTGKIIDLSNDDKKFLINYGVKTVI DLRTPSEYNVNPDTPIEGVEDVHIPVHRDAKLDTKLIAMRQTYDKIQYAGFKSMCYQYRR SITEPFSQNAFKKILETLASQKDGATIFHCSEGKDRTGLTTVFILYLLGVNWETIRQDYL YSNFTLRDYQAAMDKKIIAEGGNDILRSNIRSLAGVANEYLDTALLTIKQEYDGIDNFIH NQLGLDQEFIQEFRNLYLEVK >gi|308170620|gb|AEHR01000001.1| GENE 33 34337 - 34876 426 179 aa, chain - ## HITS:1 COG:no KEGG:LJ0553 NR:ns ## KEGG: LJ0553 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 178 1 177 178 182 54.0 7e-45 MIILLLVLAYLIYQTKKGFQIGFAQRIINLVFSAIIFSIAVIFQNPLGDWLFMEFSNKTP NLNSTNNSSDLILYHFIGFFIILFIGKIIKRFIKKRLPKREHSKHHLIGLLDSILGACIS FFAAYFFVYIILSMFEFFENPWFIQQTIDAPFLRFIIYSTPLISNGMFKSIFGISQTLS >gi|308170620|gb|AEHR01000001.1| GENE 34 35030 - 35749 785 239 aa, chain + ## HITS:1 COG:BS_gidB KEGG:ns NR:ns ## COG: BS_gidB COG0357 # Protein_GI_number: 16081152 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Bacillus subtilis # 1 239 1 237 239 248 52.0 8e-66 MNSDIFKELLLKQGIELSARQQEQFRTYYHQLIVANEKTNLTRITEEDEVYLKHFYDSLT PIIKFREMISNAESLCDVGAGAGFPSVPIKIIYPDIKLTIIDSLGKRLTFLDKLVKQLGL DNITLVHSRAEDAGRNIKLRENFDVVTARAVARMSVLSEYCLPLVKVGGYFVALKGPKLS DELFEAQNALTILGGQIEKTCEFTLPDSMDDRTLVAVKKIKKVSNKYPRQAGIPNRKPL >gi|308170620|gb|AEHR01000001.1| GENE 35 35770 - 36615 951 281 aa, chain + ## HITS:1 COG:BS_yyaA KEGG:ns NR:ns ## COG: BS_yyaA COG1475 # Protein_GI_number: 16081151 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 15 279 28 283 283 199 45.0 4e-51 MSLFFSHKDKLPENKKITDIDLDNIVPNRYQPRRAFNDETIAQLAQTIQEQGLLQPIVVR HILDSDKYEIIAGERRYRAVKLLKWATIPAIVNSMADEQVASLALIENLQRENLNPIDEA KAYAQLMKINNLTQEQLAHQVGRTQSYIANKIRLLKLTPKVQSFLVAQKITPRHGRALLT LSASDQDRAVSEIVKKDLTVKETENMAQDIDRYFSNMGQEGATKAKASRKVTVKTGSDFT VQINTIKQAIKMVKDSGMIVKQHENKSKDSYKITIEILKGE >gi|308170620|gb|AEHR01000001.1| GENE 36 36618 - 37391 788 257 aa, chain + ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 250 1 250 253 329 64.0 4e-90 MAQVISIANQKGGVGKTTTTINLGASIAIRGYKVLIIDTDPQGNATSGLGIEKSSVDQDV YNVLIDEISMSKTIHHTSTPNLDIVPATIQLAGAEIELTSLMARETRLKQGIDEISDQYD FILIDCPPSLGQLSINAFTASDSILIPVQSEYYAMEGLSQLLNTIRLVQKHFNKNLGVEG VLLTMLDARTNLGADVVKEVKEYFNKKVYKTIIPRITKLAEAPSFGKPITEYAPKSRGAQ VYDSLAKEVLKSHGKKI >gi|308170620|gb|AEHR01000001.1| GENE 37 37375 - 38253 963 292 aa, chain + ## HITS:1 COG:BS_spo0J KEGG:ns NR:ns ## COG: BS_spo0J COG1475 # Protein_GI_number: 16081148 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 9 285 3 277 282 254 52.0 2e-67 MEKRSKGFKSLGRGLEALFDDGPKIKDGEEIRDIKLDDIRPNPYQPRKNFDDKGLQELAE SIKENGVFQPIIVRKSVEGYELIAGERRFRASKIAGKETIPGIVRDFDEAKMMEVAILEN LQREDLTPLEEAQAYETLQKNLGLTQEDVSKRLGKSRPYIANYLRLLTLPPKTKRLLQYG KLSMGQARTLLGLKDKSQIDGLAKKVADEGTTVRRLELLVNKINTKSQEQSRKVTNKSKF IAASENKLSDKFGTKVNISSSNRGNGHLSISFKSTEELNRILDVLGIDLDKE >gi|308170620|gb|AEHR01000001.1| GENE 38 38268 - 38519 355 83 aa, chain + ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 2 61 5 64 65 81 56.0 4e-16 MYQLADVVQMKKPHACGENQWEVLRIGADIRIKCLGCGHLIMMSRADFNKKHKKVLRTAK DPVNLKSEFYVPKDKIIIPNINN >gi|308170620|gb|AEHR01000001.1| GENE 39 38532 - 39632 1469 366 aa, chain + ## HITS:1 COG:SP0004 KEGG:ns NR:ns ## COG: SP0004 COG0012 # Protein_GI_number: 15899953 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pneumoniae TIGR4 # 1 366 1 371 371 458 65.0 1e-129 MSLTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIEPNVGMVEVPDKRLARIQELIPA KKVVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIVHVVRAFEDDNITSVTGKVD PEEDINTINLELAIADLDAVNRRIAKVQKVAQQGDKAAKAEMAVLEKLKPVLEEGNAARS IEFNDDEQQIVKGLFLLTTKPVIYVANIAESSMADPESDSLYQIVKKHAESENAEALGIS AATEEEIASMDESDRQEFLEAEGVEESGLDRLIKAAYHILGLRTFFTAGGTETRAWTFRD GMKAPQVAGVIHSDFERGFIRAEVVSYDDLDKFETMQKVKEAGKLRLEGKDYLVQDGDII EFRFNV >gi|308170620|gb|AEHR01000001.1| GENE 40 39644 - 40420 874 258 aa, chain + ## HITS:1 COG:SPy1828 KEGG:ns NR:ns ## COG: SPy1828 COG4858 # Protein_GI_number: 15675655 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 43 244 6 209 218 80 30.0 3e-15 MSLKEKNAETIKAQKLHLQKQAMQINKVNDIEHASADDLYALLSNKNRDYVFKLKKQLAD QGKQTEEQVAILIDKLLPEIVVAQKKGVTAVNYYGKSPIEKAYELLHPVEKPKETSFTML VLDNILLYLTCFLGMFGLIQMFSNPKNNSQNMGIITIMSVGIIFGILMAYYNRMLAMDKK DRPAVWKLIAYGVVMLVGVYVWIAIVSVVPIFRPINIVLPAVVNVGMGVIAFVLRMYLKK KYNIIDPLRAKQLSKYNK >gi|308170620|gb|AEHR01000001.1| GENE 41 40473 - 41024 384 183 aa, chain - ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 3 182 2 181 183 211 52.0 7e-55 MSKQALLIIDYTNDFIDDHGALSCKQPGQILENEIVSLANQFLQQGDFIILPTDLHIKND PYTVESKLFPPHNLANTWGRQFYGKLENWYQTNKDSNSVKVIDKSHYSSFCGTSLDLFLR ERNITTLHLTGVCTDICVLHTAVDAYNLNYNLVIHKNAVGSFSPEGHLWALNHFKTCLGA QII >gi|308170620|gb|AEHR01000001.1| GENE 42 41107 - 41742 638 211 aa, chain + ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 200 1 201 214 192 46.0 3e-49 MKIMITGFNPFNGEKVNPAQEVLKFLPDTIKGHRLIKLNVETSFEKAASQVYDALLAEMP DYCINIGQAGGRSGITPEKIAINWVDASIADNMNYQPKGQKIVAKGMDGYFTQLPINAIV KNIRNSGLPAKVSNTAGTYVCNYLFYKVQYWRHTEFPNLKGGFIHIPYLPSQVLQSNQPS MSLNDITNAMMIMLETVIDYDGLKDITSLYD >gi|308170620|gb|AEHR01000001.1| GENE 43 41778 - 42866 962 362 aa, chain + ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 26 319 8 303 304 180 32.0 4e-45 MEEKRRLSRVEINHQREKKKRVSRWIKYIIGIIFLFACIYVTAVYLKTKNAFDKTYDPQN SVTQTGFSSKKKFAVLLLGTDTGALGRHEKRGNTDTIIVATVNPNDKKVSLMSIPRDTMA EMIGSPKFSVHKINAAYNIGGPKMAMETVSKLLNVPLKYYITINMGGMTKLVDGVGGVDV VPPLTFTYDGCSFTKGVKTHLDGKKALAYARMRYDDPQGDYGRQLRQRQVIMSILKHSIS FDTVRNLDEVLNTASNSIKTNIRFDSFISIFKNYRDCSNNMSNDYLHGNGAMIGDASYQV MSNKELNRVSKILREQLGLEYVELDNNETYQNSRNKQFDWLSGNQNQPYYIYEPNSNKLW HG >gi|308170620|gb|AEHR01000001.1| GENE 44 42854 - 43486 551 210 aa, chain + ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 7 162 1 163 213 67 31.0 2e-11 MAWVIVMYNLIALIVGYLFGNILCAFIVCKIKFGMNPTQIGSHNPGTANVGSIFGKKWGL LTCVGDIVKAILALILVLIVCPMHISLAYCGLGLMLGHAFPFWNNFNGGKCVAVSLPIVI FFDWQWGIFCIIIELLLMIILKNLAVSPVISLLIYSIVIFVIYSNCAGILFLIGWCVMLY KFRNDLVAYCKGEGKRTDILFLFKRVLKHK >gi|308170620|gb|AEHR01000001.1| GENE 45 43660 - 44982 618 440 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 20 438 3 415 418 242 36 4e-63 MVKVDLIAPDLICWIRGFFWRKKMDILEDLKWRGAINQQTDEQGLREYLQQHKDLTLYCG TDPTGDSLHIGHLIPFMILKRFQMAGYHPIILIGGATGAIGDPSGRKTERVLQSEEQVRH NEKCLTSQMEKLFGTENFEIVNNASWLSKLTLLDFLRDYGKLFQVNTMLNKDIVASRLAT GISYTEFTYQIMQAIDFYYLNKNKNVTLQIGGGDQWGNITGGIDLIHRIEGADHPAFGLT IPLMLKSDGTKFGKSAGGAIWLDPEKTSPYEFYQFWINQDDRDVIKYLKYFTFLSHQEIE DLAISVEKEPWKRLAQRKLAEEVTKFVHGEAGLRDAQFITNALFEGNIKELSVKQIEQGF KNAPYVEISKESKNLVDLLVETGIEKSKRQAREDINNGAIYVNGSRQDDCDFLVDVPNSF EGKFVIIRRGKKKYTLLKTK >gi|308170620|gb|AEHR01000001.1| GENE 46 45199 - 46017 762 272 aa, chain + ## HITS:1 COG:BS_fruB KEGG:ns NR:ns ## COG: BS_fruB COG1105 # Protein_GI_number: 16078503 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Bacillus subtilis # 1 248 1 288 303 62 23.0 9e-10 MIYTITLNDDKNNTCCGTYVSLLLKKKDIESIALGIIPNDYQKAEKLLDDADIKHDFIKI DATQLDLFGEDKQVAISAQQKLLDNLKCLNKGDILVICGSFAKGISPVYLSDMAAIAHKK GAYLVVSVPYATVMDILPLQPFLIQLTGQDIKNIFDKVAGRQLLYQSAHYMVAKGASHVL CTLDKQHIAVINMTQGFVAEVPDVKKVSGVGCQESLLATFLTGILKNHMTITNLANSVAA YADSLQKEGLTDYSNNLALQRKVIAQKIMFDD >gi|308170620|gb|AEHR01000001.1| GENE 47 46054 - 46854 611 266 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0165 NR:ns ## KEGG: LGAS_0165 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 266 1 266 275 176 37.0 8e-43 MNKRHTLLFTLMLVCCMTSGCAKKAMNNQASNDNIRTVATTTLKHAFNQSFNSGHFIETV QSKKMKQNSSMTALFKPNLVNITYSLNQGNKVNSEQFWLNNNMVYILLPQNKGKWIKNTN TNDKFSPDQIFNRFNAKNFSNLNQVMTNKAKIKISNGNYIFTYSKTDTSAWRSVNNLVID ALNTPGSQNMNLARAVKVSEPTRINFVYIINKHTNKIVRIDLAADFVFSNDYTCSWHAIY DEFGQHDTLAIPQNIVKSAFDIRKQK >gi|308170620|gb|AEHR01000001.1| GENE 48 46922 - 47365 371 147 aa, chain - ## HITS:1 COG:L52568 KEGG:ns NR:ns ## COG: L52568 COG2461 # Protein_GI_number: 15673592 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 8 130 316 436 490 63 29.0 9e-11 MPNNKINLSGGSLTLEQLDAIFKTIPQEFDVVDENDTIVWSSMNEGRLFERTTANLGKNV LDVHAEKSKPHVKRVLEQMHNNERKSLSINLWSKRWSKNQPINVSFYSLHNKSGDYIGCV EVTQPTKDYQWKWRRLKNFLHIIFKKR >gi|308170620|gb|AEHR01000001.1| GENE 49 47553 - 48245 1098 230 aa, chain + ## HITS:1 COG:NMB1604 KEGG:ns NR:ns ## COG: NMB1604 COG0588 # Protein_GI_number: 15677454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis MC58 # 3 225 2 224 227 308 65.0 6e-84 MSKLVLIRHGQSQWNLSNQFTGWVDVNLSDKGVEEAKKAGRLIKEHGLQFDQAYTSVLTR AIKTLHFALEESGQLWIPETKSWRLNERHYGALQGLNKKDTADKYGDEQVHIWRRSYDVL PPVIEDDSEYSQAHDRRYAHLDPHIVPKAENLKVCLERVMPFWEDHIAPDLRSGKNVIIA AHGNSLRALTKYIENISDEDIMGLEMKTGEPVVYTFDNELNVVDKEKLDD >gi|308170620|gb|AEHR01000001.1| GENE 50 48274 - 48738 429 154 aa, chain - ## HITS:1 COG:SPy0621 KEGG:ns NR:ns ## COG: SPy0621 COG1078 # Protein_GI_number: 15674697 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pyogenes M1 GAS # 2 147 291 433 433 128 45.0 3e-30 MLWTKSGDKILADLAGSYLYRHPLESVKVNNQTKYLIPKLNELIKNAGFDPQYYTATNSA FDEPYDAYKPTGKNAHSPIEIMENDGTLVELSELSPLVKALNGTVQGDERFFFPKTMIKS LGDVQLFQPLYSEFQSYINNNSLQDPQKIKGTDF >gi|308170620|gb|AEHR01000001.1| GENE 51 48794 - 49651 726 285 aa, chain - ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 11 283 2 268 434 338 62.0 6e-93 MRDINNINNFHEQVLRDPVHTYIHIKNPIIFNLVNTPEFQRLRRIKQLGPTSFVFFGATH TRFEHNLGVYELTRRICNIFTQKYATQQSDDGLWDPSNNLLVECAALLHDLGHGPYSHTF EHLFNTNHELMGQKIILDENTQINKILKQVSPDFPQKVASVIAKTYPNPQVVKLISSQAD ADRMDYLLRDAYFTGVSYGAFDLTRILDVIRPYKNGICFLDKGIHAVEDYIISRYQMYQQ VYFHRIGRSMEVILHHLLQRAQEIYQRNDIKDFTVTPQLEAFFGQ >gi|308170620|gb|AEHR01000001.1| GENE 52 49791 - 50222 394 143 aa, chain + ## HITS:1 COG:no KEGG:FI9785_297 NR:ns ## KEGG: FI9785_297 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 2 139 3 139 139 113 44.0 3e-24 MKKVKVEITSIIKQEGQVEHFKCTGCGTLSCDNDTYRIEYMEKNQSAEIPVKLLYKTDEL IMQRGTIENNNYNMMKFMANEKKNCRLIAAGKIMDLTSFTKSINFLKKNANNIQLKVEYQ LFSDIYLIGDYKISIDCFEDTQS >gi|308170620|gb|AEHR01000001.1| GENE 53 50287 - 50787 802 166 aa, chain + ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 120 16 135 191 92 52.0 2e-19 MIEVARAILQDSGKRMAFADIVNAVQQFLGKSDEEIRDRLPQFYTDLNTDGEFISMGDNV WALRSWFPYESVDEEVNHPEDEEDLPRKKNHRKVNAFIADSDSDDIIDYDSDDPEDDDLS LDETDADDYSDDSDLDDADDDDELDDGLEGQLSELHKDDLDSDDEN >gi|308170620|gb|AEHR01000001.1| GENE 54 50895 - 52517 2297 540 aa, chain + ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 531 3 530 535 748 65.0 0 MTKYIFVTGGVVSSLGKGITASSLGRLLKNRGLKVTMQKFDPYINIDPGTMNPYQHGEVY VTDDGTEADLDLGHYERLVDVRTSKYSNVTTGKIYQEVLEKERRGDYQGDTVQVIPHITD MIKKKIMRAGLTTDSDVVISEIGGTVGDIESTPFMEAIRQMRREVGDENVMYIHCTLVPL LHAAHEMKTKPTQHSVATLRSIGIQPNMLVLRAEQSIKQELKNKISNFTDVPVERIMESI DEPSLFDVPLSFQKQGMDQLVCDYLHLDSPRKTADMESWKRLDQRAKNLEHTTKITLVGK YVELEDAYISVTEALQHAGYLYSTKIEVDKVQAENITEDNIADIMRGSEGLIVPGGFGTR GLEGMITAIKYARENDIPFLGICLGMQMASVEFARNVLNLKGANTTEADPKTKYNIIDIM ADKRDVENIGGTLRLGLYPATLKKGTKTSAAYDGESVIQERHRHRFEFNNEYRQAFENAG MIFSGVSPDNRLVEIIEIPKNRFFVATQYHPEFLSRPQRPEGLFKAFIGAASGLPISEFN >gi|308170620|gb|AEHR01000001.1| GENE 55 52649 - 53914 1434 421 aa, chain + ## HITS:1 COG:lin2697 KEGG:ns NR:ns ## COG: lin2697 COG0766 # Protein_GI_number: 16801758 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Listeria innocua # 3 417 4 414 423 420 54.0 1e-117 MKKMIIHGGKPLKGDVWIGGAKNSTVALIPASILSRTTVVLEGVPRIADVDNLMDLLGEM DVKCKFEETTLTIDPENIKRSPLPAGKIKSLRASYYFMGALLGRFGKAVVGFPGGDDIGP RPIDQHIRGFEALGANVENEDDKIIITAPEEGLRGAKISLAMPSVGATMNIIMASVTANG QTVIENAAKEPEIIDLAIFLNNMGAVIRGAGTDTIRINGVSQLKAKASHTIIPDRIEAGT YISLAACIGNGIRIHNVITEHLDSYLAKIEEMGVVTDVDEDSIFVYPAGDLKMVQIKTEP YPGFATDLQQPITPLLLTAKTGEGIIIDNIYPKRVGHVPELRKMGGEICVENNIILIHPS SKLKGMDVNAGEIRAGAALMIAGLMADGETVIHNAGNILRGYDRVQDKIRKLGGDITVVE E >gi|308170620|gb|AEHR01000001.1| GENE 56 53973 - 54692 1031 239 aa, chain + ## HITS:1 COG:lin1131 KEGG:ns NR:ns ## COG: lin1131 COG0580 # Protein_GI_number: 16800200 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 1 227 1 226 234 209 52.0 3e-54 MSELLGEFFGTMVMVALGVGTGAAVNLKKSYAKNANWFYIIFAWGLAVTFGVYVAANFGS KAHLNPAVTLGMAVGGYFPWDKVFTYIVAQFIGAFFGGLIPYIHYYAHFKETKNEAEGNH VGIFATGPATNSPIFNFIDETIDTFIFVFVLIHLGNFGEGLKPFIAGFLVIVIGLALGPT TGLAMNPARDWSPRLVYTIFPVPYKSTANWSYAWVPMCGPLLGGVLAALLNYGLQNYIL >gi|308170620|gb|AEHR01000001.1| GENE 57 55163 - 56734 1292 523 aa, chain - ## HITS:1 COG:L162870 KEGG:ns NR:ns ## COG: L162870 COG1132 # Protein_GI_number: 15673504 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Lactococcus lactis # 45 522 43 524 529 152 27.0 1e-36 MSFKDLYAVNRIRMISLLVLEFLTSGLIIGVSYINTYQITAIKNRKWQQFIFLITLSLIL FIISYAGLNICQYWIEKQIQQYNHKIRFKIVNHYFYDNKVHNAAEVQNRLTNDLNLIKDS KLAVYTDIPYYLAQIIFASIGLLLFHWSLLIVVLILGTLSFYLPKFLHPAMQAAALKLSQ ANKQYLDTAEKWLDGLSVLQRFSVGAQLSRIMDNASDTLESANIARTSTMQGLAVLNKAT SALLQFALLAVTAILVTNHTVVFGVIVTVESFSSYINMSVKMLATELGQIHSVDSLGNEV NADTAVVEHIGTLQSPASLTTKNVSVKFSNGKIIKFPNLNIKSGEKILLTGDSGTGKTTL FKVLLGKIKLHTGTINFKNKYGADIKINKVKIRYIPQDPILFPDSIENNITMFNSKLKNK VLDYVKDVSFESDIRKMPLGLKTKLNLQKLNISGGQRQKIVLARACIHDDDFILIDEGTS AIDKKATLDILKKLLNSPYTVIFIAHNFNDEMYSLFDREIHLV >gi|308170620|gb|AEHR01000001.1| GENE 58 56755 - 58326 975 523 aa, chain - ## HITS:1 COG:L82520 KEGG:ns NR:ns ## COG: L82520 COG2274 # Protein_GI_number: 15672061 # Func_class: V Defense mechanisms # Function: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain # Organism: Lactococcus lactis # 1 510 155 677 715 127 26.0 8e-29 MSFQKLIKTNLLLFIVIIVLELLFAAGSATSSYIIQFAYNQLVKNILIGFLIIIASSVFL SFVSYIFSSLATYLFSKQTQKYIHSIRHKLISKYFHDKAPKVAEMENELNSNLQVLTKNY ADKSLSIIQSSFLLVTSIGSLLLMNWMLTLLALILSVITLYIPRFTRQRASNATQKVVNR NSKYLLAIEEWFNGLEELRKYTAFNKLNLVMQEVSKNLETSFVKRKKVISIADFLNGCAN SFSQIAITLLAAILFFNHQVTFGVIIAAGNFSSMILNCLLTITTSLTRIQSVQELNKQIV ESQKVIPSHKEINTDEIYSISTHDLSISFKNGETIHFPDIRIKKGEKVLLSGDSGTGKST LFKLILNKMYPTTGQVIFEDKYGKKISPDYAQIGYIPQDGKLFPTSIINNIIMFNNKLKQ QVKNSIENNDLSKDIASMPNGFETKIDLDTINFSGGQKQKIILARNEIHNFSIILADEAT SAIDSRSSYRILKNLVSSNKTVIVIAHNLTQDMEKLFSRKISL >gi|308170620|gb|AEHR01000001.1| GENE 59 58356 - 58556 273 66 aa, chain - ## HITS:1 COG:no KEGG:FI9785_p9785L.22 NR:ns ## KEGG: FI9785_p9785L.22 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 7 57 73 123 335 85 80.0 6e-16 MEKANEKKQYLLANYFGDNHSDDPFARQIEMLDSFNRSGVSTSKLQADLKRQICIFIHSL RKSRYY >gi|308170620|gb|AEHR01000001.1| GENE 60 58887 - 59060 145 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805090|ref|ZP_07699143.1| ## NR: gi|309805090|ref|ZP_07699143.1| conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners UPII 143-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners UPII 143-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 57 1 57 57 88 100.0 2e-16 MQPLTLTKQQRQEIKKQLGSLNKLEIKGLDLHFGGHNRDHLQLAYKLQILFHRNNCH >gi|308170620|gb|AEHR01000001.1| GENE 61 59168 - 59455 361 95 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_09460 NR:ns ## KEGG: LAC30SC_09460 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 88 1 87 100 81 63.0 8e-15 MKKSDIKIDSIVGAKSDEEISKPFEGKVEKIYENSVLLSITSYEPEDETNVSDLNGKIVV SFKNLKKLAKKPSKQAETPTNEIKISKIEAKDEQQ >gi|308170620|gb|AEHR01000001.1| GENE 62 59548 - 60105 329 185 aa, chain + ## HITS:1 COG:jhp0304 KEGG:ns NR:ns ## COG: jhp0304 COG0194 # Protein_GI_number: 15611373 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Helicobacter pylori J99 # 4 185 7 187 206 78 30.0 8e-15 MKKIIIIAGPSGAGKTTISNYLQEKYNIPRVLTHTTRPPRAGEQNGKEYYFETDSSFSKL HLFEKVEYGHYQYGSSQESLQKAWSQHDLVSIILETQGVNSYFHKLPIDNICFIYITISD HSKLMQRLIERGDAPIEINKRINSSEFKRDLQLHGVLKKYAHIVVNDNWQDTKGTIAKLI DQIQH >gi|308170620|gb|AEHR01000001.1| GENE 63 60248 - 60949 195 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145223395|ref|YP_001134073.1| NLP/P60 protein [Mycobacterium gilvum PYR-GCK] # 124 231 240 346 348 79 41 5e-14 MKPLMSRLFKFTLATTIAVTGVVVSNSLKPVKAEAAGVIAKVNYVPGYGIAVWNNINGGH TTGQYLPHGSRWVVVKTSYDKQGRLWYDLGHNHWVLASYTVSDSTPVSQSASANTSVKAS AQAIINFALKQQGKPYVYGAAGPSAFDCSGLTSYVYKQVTGRYIGRTTYNQLNAGTRVSV SQLQPGDLVFWGNYHVGIYIGNGQYIHSPQPGQSVTVANISSYYYPSYGVRVL >gi|308170620|gb|AEHR01000001.1| GENE 64 61105 - 61641 402 178 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1928 NR:ns ## KEGG: LDBND_1928 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 2 176 8 183 403 105 36.0 6e-22 MRKKARSYKFSLIILLLLSFLLVIFLLMANNKRKQNQHNRIRQINQAVIYNKSHFNPCVK IYGVDVSKLTIDQAYRKVNKKAVNALMIDGRDIKLIRKDFETITRKQVEDYFNEQKTRLP NYQKYIFRNKELLDLKGKAKNIADAKVVFEILGKKYIFSRKKYYPKVECYNRSFHFFR >gi|308170620|gb|AEHR01000001.1| GENE 65 61550 - 62296 752 248 aa, chain + ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 27 248 260 465 466 116 35.0 3e-26 MKFWVKNTFSQEKNITPKLNAIIGHFIFLDDSLLKARIERLNQEYSTLHKKYHFETPEHG MILVRNESYGWAINSKQLIEAIKSAYINKHSVLKGHNFVYGIGYSSYGKGYGKSNNGLGN TYIAVSIPNQEAWFYKHGKLVLKINDIVTGTAANKLDATPKGVWYIHYKQSPSVLRGKNS DGTPYASRVRYWMPFTLSGCGLHDAAWRTDWSKTAYIKNGSHGCVNIKPSLIKAVWNVVE KDEPVVIY >gi|308170620|gb|AEHR01000001.1| GENE 66 62362 - 63027 472 221 aa, chain + ## HITS:1 COG:no KEGG:FMG_1337 NR:ns ## KEGG: FMG_1337 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 6 194 22 210 232 139 38.0 1e-31 MASVWIALFVSVLLVHKFRYSKLLLNFVFGSMLCLQLMLIYWYYGEPSTFLHEGLPLFHC RIAAIMIPLMYYMKQKKLAVYFSWLGIIGTTLAFTIPDPSRYVWPHITNVTYIGSHILLM CASIMVIENVETELRSVDIMSITLAMNTLVLAVDLLLKANYCYLMQLPFKLWFTPNGVII FIIMTFLLICSISFLQKEYEIACKKNLAKKATVKDDTDYLQ >gi|308170620|gb|AEHR01000001.1| GENE 67 63019 - 63525 302 168 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325913582|ref|ZP_08175947.1| ## NR: gi|325913582|ref|ZP_08175947.1| conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners UPII 60-B] # 1 167 1 167 167 199 96.0 7e-50 MKNNYKNNILILILLLGQLSIIWMSLPYILCSKIILILSTGFFSYAIISDFFNQEFYLLL AIIPIISLIIEWKNSFGAFTAGEWKIFLILFFVFFILILSKKIGSGDLFYFIIFCGIYGV GISLHILLIACCTALIYIIFHNKNNRSLPFLPFLFLGQWLTLITLLLL >gi|308170620|gb|AEHR01000001.1| GENE 68 63699 - 64106 676 135 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518425|ref|NP_964355.1| 30S ribosomal protein S12 [Lactobacillus johnsonii NCC 533] # 1 134 1 134 135 265 97 8e-70 MPTINQLVRKGRHSKTTKSKSPALNYAYNSMKKEMNYDPAPQMRGVATRVGTMTPKKPNS ALRKYARVRLSNLVEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGALDTAGV DGRKQGRSKYGAKKD >gi|308170620|gb|AEHR01000001.1| GENE 69 64122 - 64592 762 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518426|ref|NP_964356.1| 30S ribosomal protein S7 [Lactobacillus johnsonii NCC 533] # 1 156 1 156 156 298 93 9e-80 MPRKGNIAKKNVLADPIYNSKLVTKLINHLMVDGKKAKASSILYDAFDIIKEKTGKEPVE VFEEAMNNVMPVLEVKARRIGGSNYQVPVEVRPERRTTLGLRWLVSYSRLRNEHNMDERL ANEIMDAANNTGSAVKKREDVHRMAEANRAFAHYRF >gi|308170620|gb|AEHR01000001.1| GENE 70 64625 - 66715 2681 696 aa, chain + ## HITS:1 COG:BH0131 KEGG:ns NR:ns ## COG: BH0131 COG0480 # Protein_GI_number: 15612694 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Bacillus halodurans # 5 694 3 691 692 992 70.0 0 MANKREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETHEGDSQMDWMEEEKE RGITITSAATTAQWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVTVLDAQSGVEPQTEN VWRQAETYGVPRIVFVNKMDKIGANFDFSVKSLHERLNANAHAVQMPIGAEDQFEGVIDL IEMVADVYDEDQLGAKWETIPVPDEYKEEAEMRRAELIEAVADVDDNVMEKYLGGEEISN EELKAAIRKATLNLEFFPVFAGSAFKNKGVQMMLDGVIDYLPSPVDVKPYVAHEPKTGEE VELLADDDKPFAALAFKIATDPFVGRLTFIRVYTGSLQSGSYVLNASKNSRERVGRLLQM HANTRQEIPEVFSGDIAGAIGLKNTTTGDSLTDPNHPLILESLQIPDPVIQVSIEPKSKA DRDKMDVALQKLTEEDPTFKAETNPETGQTLVAGMGELHLDIQVERMKREFGVEATIGEP QVAYRETFTKVASAQGKFVRQSGGKGQYGDVWIEFTPQEEGKGYEFEDAIVGGVVPREYI PAVDAGLQEAMKNGVLAGYPLIDVKAKLYDGSYHEVDSSEAAFKVAASLALKNAASKAGA VVLEPIMKVQVITPEEYLGDVMGSITARRGTMEGMEDRAGAKVINSFVPLSEMFGYATTL RSSTQGRGTFTMVFDHYAPTPKSIQEEIIKSRGGNA >gi|308170620|gb|AEHR01000001.1| GENE 71 66880 - 69189 2432 769 aa, chain + ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 9 761 4 765 774 486 38.0 1e-137 MVWVNILTKKSEQQKEQEHLDHVLSLIQDRIKIVEKSISGAQSEAQNLNAHFFDDLKLDY DGYSTSMETALSIHQQQQLLEERQNAWQHATKQLSTLQRLNKRPYFARIDFQEQNEKPET IYIGLGSFADKNDQFLIYDWRAPISSIYYDGKLGSVTYYAPDGEQEVLMTKKRQFSIKDG QIINMFDTNESIGDQMLINVLNEKSSTQMKSIVTTIQREQNKIIRNTTADLLFVQGSAGS GKTSAILQRIAYLLYRYRGNLVSSDVIMFSPNQLFNDYVKNVLPEMGEQNMVQMTYRQFV SRRVPAFKVESLFDQFEDQNKNPKIAKLKDSLEFFEAINHYSKHLIKHGVVFKNIYFKDK EKPFFDKDYIKDIYYSFNENYNLRNRIEATREKLVARLNESISAEAKKAWVAKYLESISK EELNKLYDRPDQEFASSTEEERFLSKKIVINSLKQVLRKVNANSFFNIRAQYLAFLRAIP KMIDLQQYGISENEWYDHIELVKQNFVHKQIKITDISSYLYLYDVITGRRVNYEMRYAFI DEIQDYTPFQLAYLKYNFPRAKFTMLGDLNQAIFTKDDSLTLLDKVKQLFISEKIELIKL TKSYRSTKQITDFTKQILKSGELIEAFDRNGAKPTIWHCDNASAVHKINDILIANNQEKL TTAIITKTLEEARDLTTKLKSESIKVTLIATANQRLVPGVLVIPSYLAKGLEFDAVIAWQ VNNNNYHKDDERQLLYTITSRAMYKLDLIYTGELSDLLREIKADTCKWS >gi|308170620|gb|AEHR01000001.1| GENE 72 69310 - 70119 723 269 aa, chain + ## HITS:1 COG:SP0839 KEGG:ns NR:ns ## COG: SP0839 COG1072 # Protein_GI_number: 15900726 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Streptococcus pneumoniae TIGR4 # 37 268 75 306 306 195 40.0 9e-50 MWRHCVSPGANSLDFLILLIEKSYTNYLNKQKNNLQFVTKSIVNPPFVVAVTGSVASGKS TLSKKLKLALQEKYGNDNVDLVSMDGFIMSNAELDDKGLMSQKGFPSSFKWDAIVNFLTE IKRRRPKVPYRLYSQTISDLVPDKIAYVKQPDILLVEGINLLQTYGKQKVLTDFIDFSIY LDADESLLESWFMDRFHQLLVVNANSPDNFFYRWVKMPTTEADRLAHQVWRDVNLKNLHE YILPSKERADLIVKKCRDHIMTDFYIKKY >gi|308170620|gb|AEHR01000001.1| GENE 73 70132 - 70692 804 186 aa, chain + ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 186 1 185 185 183 54.0 2e-46 MTTAIELKKGMIFKQDGKLIEVLVSNHHKPGKGNTVMQMDLRDVMSGSVVHKTMRPSEKV ELVHVDLKKAQYLYDDEVNFIFMDTATYEQYEIPKEHLSEESKYLLPNINVDLKFTDEGQ LIGVGLPTTVNMKVVETQPGIKGATAASGGKPATMETGLVVTVPDFINEGDELIINTDTG EYKSRA >gi|308170620|gb|AEHR01000001.1| GENE 74 70834 - 72129 1407 431 aa, chain + ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 6 415 1 409 412 386 47.0 1e-107 MGEDAMNDIDTAYIEQKFVEYCKVNTRSDPNNNCVPTTKGQVELLMIIKNELQELGLKNI SYSAKDSYLVGLLPSNTATLTTAVGFVAHVDTADYNAENVQPQIYRNYDGEKIYLDPQKD RVLDPAEFPSLKKHIGETLITASGSTLLGADDKAGIAGLLGMLKFFKNHPNAEHGDIWVA FGPDEEIGQGAKRFDISRFPVEFAYTLDNGDPGDIAYETFNAASATLQFKGTIVHPGEAY GLMVNATTMASEFIESLPKDQVPEKSKDFEGFMMVLSNSGDVGYAKVELIIRDFDTDSFL AKKQMLIDLVDAFNKKYGENRVEISMHDQYKSPGDLIKQYPYVVNLVLHAYEKMGLVPKI IPFRGGTDGDFISEKGIPTPNLFNGGANFHGPYEYVSVESMSLLSKTLITIVQLHLKMCD HRDNTPLKRKY >gi|308170620|gb|AEHR01000001.1| GENE 75 72149 - 73060 997 303 aa, chain + ## HITS:1 COG:no KEGG:LJ0652 NR:ns ## KEGG: LJ0652 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 73 299 56 280 282 329 81.0 7e-89 MARRKKPQKRNDLSRSIFWLICIILAFTFWGTKRSAYHTHTDNYRTQFNKQVPSSSHRDN SPKINATSEIPAAKIAKSAYGGLDDSDYQKLAACNFKSGDAAYVYVNNNHSTLIKNAWKI NKVIYSNLDSLNRTSHSNTAFLESRNVANDSLRVRQFINPTGWHSNRQNAMRTQIYNRGH MIAYSVSAGIDQSGRYNPNNQSGDQNNIKNLFTQTAFSNQKIQTIFESKVRKALRMGQKV IFQATPIFRGNELMARGINLQAISVNGWLDFNVYIFNVQPGYTFDYATGRAKVARDFSVG WVK >gi|308170620|gb|AEHR01000001.1| GENE 76 73124 - 74041 1061 305 aa, chain - ## HITS:1 COG:alr4655 KEGG:ns NR:ns ## COG: alr4655 COG2971 # Protein_GI_number: 17232147 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosamine kinase # Organism: Nostoc sp. PCC 7120 # 4 288 3 305 320 95 31.0 1e-19 MFKYMIGIDAGGTHSTAIAYDEQGKELGRAESGPGQINNDYNLGIKNITVAINELRNKID GDCIKILAGIAGLSVVGNAPEVAATISSMVGNIPTRAITDSLLALYNGLEGTDGALVIAG TGSVVNGRQNGSLITVGGYGSLLGDEGSGYAITKAALVTALSKWDQRQPSSLIDLFIKIW NLDNMNDAPAKFYTMTSPQVASYAVEIAKLADSGDAEARDIIQEQAHLLARDILMCLDRY QEPKPMRIALTGSVLSNNAMIRSFMEDEVKEQYPDAVFSVSNGENARGVIYDKSKDYRYF TSSKN >gi|308170620|gb|AEHR01000001.1| GENE 77 74213 - 75121 531 302 aa, chain + ## HITS:1 COG:no KEGG:LJ0665 NR:ns ## KEGG: LJ0665 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 294 1 306 314 138 33.0 2e-31 MKIKRILVAIAISFCSFILYITNVQHLKSMKLIVSKPKSVQLHNSSSSSIATKSQSEKDF IVAKNSDHQLIEPIKNNVDLMMPFQVAVQGLNFNKKASIYNKKNSLEVGNILKLFVLLAY HKALLDKDPKLTKPYKVMAGDVKGKGLIVNTSYAYPFLIQQMMYHNSNDAANILVKVLKL EYINKVAAELGAKSTRIINSFDQKDVGQTTANDMITIFTKLYRRQILTVNDCNLILRLLN TYPNKGLAAGIPGICHYISDDNASCCLVNTNGKVYIIAAIGGDKNRFNQLGKDVYNVIAM HK >gi|308170620|gb|AEHR01000001.1| GENE 78 75143 - 75985 936 280 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1627 NR:ns ## KEGG: LGAS_1627 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 11 267 60 332 336 189 40.0 1e-46 MHENSENKKEKQQNDTVLLMVEWIKHNAVLVFVLGIVLMIITSIIAFMGWAVLVCLLMLL YFVCANEKIAEEYTVDRKLEEKVDVVGSSLVNSVENSRISNRYRRYRQSTREPRTWLQWG VIAMALICLVTIFYGPFASDALSVVQGHTISNTLLFAFNRFSALHYRLIAWVMWLFIVAI PITIIIITLKNIKHNREFAFVLSLLETIVLLIWLFELVFLNVGIKVGLGTITGSRLYRIQ TNIISFGVSSYLLIVASCITSVVTFKSWFSYIKDKNKNTK >gi|308170620|gb|AEHR01000001.1| GENE 79 76035 - 76814 1073 259 aa, chain - ## HITS:1 COG:L141530 KEGG:ns NR:ns ## COG: L141530 COG0657 # Protein_GI_number: 15673289 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Lactococcus lactis # 19 257 15 253 257 82 28.0 9e-16 MVSIIKDIKYDDRNNLFTDIYFPEQTSTTNKILIFWHGGGWIKGSKEACQELGVKFAKAG FTTMIPEYRLASQSTFPGAHQDSKTFVEWLLNSQYVTMPRSKQPIYQIGASVGATMALFI AGQFGFDTVCWSAPLDFSEWIKNHKDTVASTDAASELHLTNPRQIKDSFYKFFTVSYAGG EDPSILQQMDAYNYDLDKLNRLLMINSEHELTPLDSVLKFAKTLAQQNKALNLILLPGDQ HAMGYADKYIDKSIEFLLH >gi|308170620|gb|AEHR01000001.1| GENE 80 76960 - 77559 674 199 aa, chain + ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 7 197 10 201 201 148 41.0 6e-36 MSAKDSRKLINIITVISTILMILLGIYWYKMGILTDQVKMKEYLSDKQVIGPLIFVFIQI IQVVIPIIPGGVSLVAGVIFFGPLWGFIYNYVGIVIGSIIIFFLARFYGKPFILHLVSEE TYNKYMKWTVNQKKFNHIFAWCIIAPVAPDDILCMIAGLTEIKVSTYIMIIIFGKPWTIL AYSLGLVYGSKWFLKILGK >gi|308170620|gb|AEHR01000001.1| GENE 81 77563 - 78060 242 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116514699|ref|YP_813605.1| acetyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 3 147 5 143 164 97 40 2e-19 MSRIYLRKIIPSDIKTLYKWGQDPLYHNTACFEKMTSMAQAKVATDCYMARKYSYAIVLA ETKQMIGLIELYNHVPFNGAQPICEVGFLLQKDYWHQGLMKEAMDKIINFAFNKLELKQV WAVTFADNSNAQSFLEKYGFEYVKTVDTFIEEIFRKELYFVLTDR >gi|308170620|gb|AEHR01000001.1| GENE 82 78305 - 79615 1617 436 aa, chain + ## HITS:1 COG:SP0411 KEGG:ns NR:ns ## COG: SP0411 COG0172 # Protein_GI_number: 15900330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 430 1 424 424 550 64.0 1e-156 MLDIKVIRENLDWAKKKLATRGIKPEELDELVAIDVKRREVLTKTETLKNKRNEVSAQIA QAKKNKENADDAIKEMREVGQEIKALDVEVSELTEKQKYILLRLPNFPDDSDPIGPDDSY NEEVRKWNEPTKFTFEPKAHWDLGTDLNILDWDAAAKVSGARFVYYKGAGALLERAVFNF FLDENVKAGYTEVIPPYLVNYDSMQGTGQFPKFTEDVYTIVDNDDPDKPRELTLIPTAEV PLVNYFRDKILDIKQLPINVTAMSPAFRSEAGSAGRDTRGLIRMHEFRKVEMVKICDEDS SWQELDKLTKNAEHLLQKLELPYHVVALSTGDASFTSAKTYDLEVWMPAQNQYREISSCS NCTDFQARRSLIRYRDEAGKLHLAHTLNGSGLAVGRTVAAILENYQNEDGTVNVPEALVP YMHGMTVIKPEPKFGE >gi|308170620|gb|AEHR01000001.1| GENE 83 80019 - 81362 1224 447 aa, chain + ## HITS:1 COG:Z5177 KEGG:ns NR:ns ## COG: Z5177 COG1486 # Protein_GI_number: 15804281 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli O157:H7 EDL933 # 7 447 3 440 440 548 58.0 1e-156 MMKDNRKFSVVIAGGGSTFTPGFVLNLLKNQDRFPLRKIKFYDNDAERQKKIGDAVSIIM NERAPEIEFEYTTDPKEAFTDVDFVMGSIRVGKYHMRSLDEKIPLRYGVNGQETTGPGGM AYGLRSIPAIIQIIDWMEEYSPNAWMINYSNTIAIVAEACRRLRPHSKVINICDMPIDIM TRMAQICGLKDYHDLDFNYYGLNHFGWWKGVWDKKTGKDLMPELKKYVSKNGYWVGGDFD KNTEASWKETFKKAADCYALEPNTLPNTYMQYYYYPQYEVKNADPNRTRTDEIREYRQKI VFGECERIVKEGTAENNMWDRNETHSEYIVDICHAIAYNTGEKFLANIPNNGAISNMDPD SIVEVPCLFTSHGVEPISTGEAGIFQRGLMMEQQTCEKLVVDAYEQHSYEKMWEAFALNK TVPDALVAKKILDDMIPENKPYWPILK >gi|308170620|gb|AEHR01000001.1| GENE 84 81446 - 83068 1397 540 aa, chain + ## HITS:1 COG:BS_glvC_1 KEGG:ns NR:ns ## COG: BS_glvC_1 COG1263 # Protein_GI_number: 16077887 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus subtilis # 1 449 1 445 452 482 53.0 1e-136 MMQKLQRFGAAMFVPVLLFSFAGIVVALGCLFNNATIFGSLASPTTGWYKVWDTISAGGW TVFNQECLLFVVGLPIGLANKSHGRAAMESLITYLTFNYFVGAMLSHWGAFFGVPNFNKI TITANATNGGLTQIAGIKTLDTSIIFSLIIAGIVVYLHNHYFDKKLPEWLGTFQGSTFVY ILGFFVMIPVAFLTCLIWPKVQLGINSLQHFIVGSGFVGIWIYSFLNRVLIPTGLHHLVY IPFQFGPAVVAGGLQPYWLKHITEYAASTKPLSQIASMEGFQLYGNEKVFLVPFICWAFY ATAKKNKKKQTSALLIPAALTSVLTGITEPIDFTYLFAAPILWVVYSVMAATMNTIMWCF GLRGLMSDGAIGIASMNWIPLWSNHWHVYVMQFIVGIVCGLLTYFIFKLMIEKFNYVTPG READNEDVKLINKKEYKEKMAQQKIAQQATGVAESDPYIARAQAYLELLGGSSNIEEISS CATRLRVTVKDPDKLGSDAQFKANKAVNVVHHGKAIQVIVGLDVAQVLERMQALIEKNGH >gi|308170620|gb|AEHR01000001.1| GENE 85 83400 - 84206 452 268 aa, chain + ## HITS:1 COG:SA2115 KEGG:ns NR:ns ## COG: SA2115 COG1737 # Protein_GI_number: 15927904 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 14 253 13 246 254 77 25.0 2e-14 MTDLKRRVWEKSGELSTSEKEIVRFLFSNSKLCSHLSLAKLATKLYVSESSIFRLCKKIG LSGYSELRFELSDLAHERKINTIDIATEVENAIQEVLNYCSTLDLEKVFLDIEHANTIYL YSTGWSQELIARYLLHELFMIGKKAVMLPSAIEELKMVSKRATEGDMLFIVSYSGDNVQI RDEISKIQLINNKIITVSFTTLRPAELVSLVDYSFFFRTLKFEKFWVEGDATIDSFSPAY TFIDLLIAKYYQWEQSKGELDNVDYDKE >gi|308170620|gb|AEHR01000001.1| GENE 86 84184 - 84693 513 169 aa, chain + ## HITS:1 COG:no KEGG:LJ0638 NR:ns ## KEGG: LJ0638 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 156 1 156 169 209 71.0 3e-53 MWTMTKNKVTSFCDQIMERLHLNTRSILKWYSIILFVAPLLYWGLLEFRLVMTQVSFVNM LHKHPAMAVSVIIAITDFLLGYYCWIKKDEIVNNRTRLRTFWILQCFCQLLVGNIICFLL SIFGLRALPSSKVKSTTVSYFKVTIIISTLLYALCILLLGLIGLQGLRG >gi|308170620|gb|AEHR01000001.1| GENE 87 84698 - 85183 706 161 aa, chain + ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 11 156 4 149 151 133 45.0 2e-31 MFNFFKNKGLEVDAAVDGGLIPISEVNDDVFSTKMLGDGYAIKPISGDIHSPVEGDISTL FPTKHAIGIKTKEGLEILVHLGIDTVELNGAPFQMKIQKGDHVIAGQLLGTMDLKQVVDS GRDDSVIVVYTNMDLIESISPVQKGSINSGDRVQTITFKKK >gi|308170620|gb|AEHR01000001.1| GENE 88 85326 - 85850 582 174 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 112 1 100 189 63 33.0 2e-10 MVKKTFINLNSAKKQKIEQVMLDEFSNYDLNQANVARIVKEAGIARGAFYTYFDDLEDAY LYVYNKAMLQIHNPIKMDKPEFDADLFYKMAYELVCNIEKSKYKKLLKKHMLVNESLLIH NFQVENQKAIHMDTKTWSAMVLTHETIKLALFDLEHKENYFRKLKQGLDCLRRV >gi|308170620|gb|AEHR01000001.1| GENE 89 85854 - 86909 969 351 aa, chain + ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 350 2 356 357 224 37.0 1e-58 MFLAWKEIRYEKVRYGLITCIILLISYLIFILSALAFGLANENTQVIKEWQMQTIILNEN SNLNLNQSILTKQDLEKNKLTKQDASIGQVPIVVKKAHRKTVSSQLIAINREQYIFKTMS LVAGRKFNNKHEVVVDSLFNQYGYQIGDKIKFNGKNDSYKIVGFVKNAKLNIAPLVYGDF SLWKKIRPMAPAAQATAIVSQRKLNYHHKQAKNYSTKQFILKLPGYVAQNTTFEMMIAFL FIISLITIAIFLYIVTMHKLPSYAVLRAQGVSAKMLVKATVLQSFLLSIVGSMLGLIFTL LTLKAMPITVPMYLSSWMMVSVILGMIVVGLVGSLIPVRSILKVDPASAIN >gi|308170620|gb|AEHR01000001.1| GENE 90 86932 - 87609 282 225 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 3 201 4 199 223 113 34 4e-24 MSLVSLKNVNKIYGKGSSQIKSLDNINFAADAGQVVLIEGPSGSGKSTFLTILGALQKAT SGQVIISGEEITAMNSKQLDQLRLNKIGFILQSYALVPYLKIREQFVLANIIKKTNNMQQ LQLNNLLEQLQVNELLDKYPKELSGGQRQRIAIARALYTNPPIVLADEPTASLDSKCVTL VGQLFQQFAHQDGTLIVMVTHDQRLEQYADVIYRIVDGKMDKRID >gi|308170620|gb|AEHR01000001.1| GENE 91 87612 - 88328 384 238 aa, chain - ## HITS:1 COG:TM1655 KEGG:ns NR:ns ## COG: TM1655 COG0745 # Protein_GI_number: 15644403 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Thermotoga maritima # 2 238 12 245 247 99 31.0 5e-21 MKTIILLSKDIVLFTGLNTLANQKQTSIYNALTIKKVIKHASDPDTIGIIIDLHHLHDED FFNNLDKIRHHFNGPIIILTKVFDAHSAKKMFKIKASVCLTSYNPDLILAQLISLIWLNE NPRKIVENQEDIHDYLLSEHKKINLDLRQYPPKLNGKILNLTSKEFKLLKFLFENQNHVL SREQLLDGVWEYEDEYNTTRIVDMHISNLRDKIEADPANPQLIKTVRGLGYMLKLPNQ >gi|308170620|gb|AEHR01000001.1| GENE 92 88475 - 89344 1025 289 aa, chain + ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 28 286 45 302 302 263 53.0 4e-70 MKIKTIKYLLFTLVMTCTLTACSQKQESLISVGSTALQPLVEEASVHYADKNHVRINVQG GGSGTGLNQVQAGTVTIGNSDIFAQQADGINANKLIDHRVAVVGIVPVINKKIGITNISM LQLREIFSGKINNWNQLGGPNQKIVVVNRAEGSGTRKTFELEVMKGQKMKLSQTQDSNGS VQKIISTTPGSISYLAFPYANKKKLQKLSINHVKPTSANVLTNKWVLWSYEHMYMNKKKQ PQAAKKFIEYIMSRKFQTSTVEKMGYISIHKMKVQKDANGKVTLIKNKG >gi|308170620|gb|AEHR01000001.1| GENE 93 89347 - 90261 858 304 aa, chain + ## HITS:1 COG:lin2641 KEGG:ns NR:ns ## COG: lin2641 COG0573 # Protein_GI_number: 16801703 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 7 301 8 303 307 248 49.0 1e-65 MSDLHPKLLKTSKAINENRRGIVITAFCTMFIVITAISLIVFIAIKGLAIFIDNRASLLK FLISDVWQPGNTSNGRPLIGALAMIVGSFGVTLLALMLAIPFSLALSLFVTQYAKKRVKD ILQIVLDLFTGIPSVVYGFLGLILIVPVVRKIYGGTGFGLLSGAVVLAVMILPTITSIMI NAINGVPISMIQASLALGATRWQTIYKIILRFCLPGLLIGVIFGMARALGEAMAVQMVIG NTVLLPKGLATPTTTLTSQLTVQMGNTIFGTVQNNALWTLALFLLLISLVFNVLIRTLAK KGNY >gi|308170620|gb|AEHR01000001.1| GENE 94 90264 - 91157 752 297 aa, chain + ## HITS:1 COG:SPy1243 KEGG:ns NR:ns ## COG: SPy1243 COG0581 # Protein_GI_number: 15675203 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 295 295 264 46.0 2e-70 MSNSFIDKIVKKIILLIVLLLLSFLLLFLTYIFGMGIQYLSLKSILSPSQITGSGGGIRD QLFNSVYMLLLTLIISLPLSIGSGIYLAEFAPKNKIVDFIQNMIDVLSYMPSIVVGLFIY LIIVIKFNIGFSILAGSLALTIFNLPILTANIKNAFCNISQAQRDAGKALGLSEWNLIKG ILLPQTIPTIIVAVVLSAGRIFGEAAALIYSSGQSAPLLNYANWNPFCMDSPLNIMRPAE TLSVYIWKINSEGLKPDAEKISFCSILILVGVILLFDLVAHFLGNYLHQKFIYGKKK >gi|308170620|gb|AEHR01000001.1| GENE 95 91157 - 91924 226 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 11 242 12 235 312 91 29 1e-17 MSNNLDTSYILQTSELSVSYGKTKVLKDISIDIYQNKITSLIGCSGSGKTTFLRSINRID DNITTVSGKIYFAGLEINNPKINVYELRKNVGMVFQQPNVFAKSIYENIAYALRYHGMSD KDEVYETVEKSLKQTSLWDEVKNNLAKCALELSGGQQQRLCISRAIALKPKLLLLDEPTS ALDPIATAKLEETIKKLKEKYSIIMVTHNMQQARRVSDYIAFFNMGSLIEYGSVDDIFLR PQISITKNYVSGKFG >gi|308170620|gb|AEHR01000001.1| GENE 96 91936 - 92610 256 224 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 217 1 211 245 103 33 4e-21 MKIISIKDLSLKYDEFEVLHKISMDIEANAVTALIGASGCGKSSFLRCFNRMNDLIPNSK VTGNIKFKQYEIYANNIDLAFLRQKIGMVFQQPNAFSFSIYDNVAFGLKIQGINKKKILD ERVENALKEAAIWDEVKDKLSCNACSLSGGQQQRICIARALATNPEILLMDEPTSALDPI SAAKVEETILFLKKQHTIILVTHNIEQAKRVSDNLAFFYVWTLN Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:23:04 2011 Seq name: gi|308170505|gb|AEHR01000002.1| Lactobacillus iners SPIN 2503V10-D contig00054, whole genome shotgun sequence Length of sequence - 101133 bp Number of predicted genes - 117, with homology - 115 Number of transcription units - 42, operones - 23 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 140 81 ## HMPREF0868_1573 hypothetical protein - Prom 292 - 351 12.3 + Prom 275 - 334 9.8 2 2 Tu 1 . + CDS 359 - 769 382 ## gi|309805781|ref|ZP_07699818.1| hypothetical protein HMPREF9213_0530 3 3 Tu 1 . - CDS 556 - 1008 306 ## FI9785_p9785L.16 putative single-stranded DNA-binding protein - Prom 1074 - 1133 8.9 - Term 1241 - 1298 -0.3 4 4 Tu 1 . - CDS 1512 - 2294 854 ## COG4086 Predicted secreted protein - Prom 2331 - 2390 8.4 + Prom 2349 - 2408 11.5 5 5 Op 1 1/0.000 + CDS 2429 - 3235 1008 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 6 5 Op 2 . + CDS 3265 - 3921 747 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Prom 3925 - 3984 4.6 7 5 Op 3 . + CDS 4010 - 4999 978 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 5010 - 5055 7.2 + Prom 5040 - 5099 12.1 8 6 Op 1 . + CDS 5156 - 5821 658 ## LJ0105 hypothetical protein 9 6 Op 2 . + CDS 5829 - 6254 495 ## LGAS_0105 hypothetical protein 10 6 Op 3 . + CDS 6314 - 6655 217 ## LGAS_0105 hypothetical protein 11 6 Op 4 . + CDS 6673 - 6804 61 ## 12 6 Op 5 . + CDS 6866 - 7180 352 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases + Term 7294 - 7334 -0.0 + Prom 7224 - 7283 5.8 13 7 Op 1 . + CDS 7418 - 7822 352 ## LCRIS_00111 transcriptional regulator, xre family 14 7 Op 2 . + CDS 7831 - 8199 190 ## LCRIS_00111 transcriptional regulator, xre family + Term 8259 - 8319 15.3 15 8 Op 1 . + CDS 8652 - 9857 931 ## COG0477 Permeases of the major facilitator superfamily 16 8 Op 2 . + CDS 9858 - 10466 519 ## Smon_0662 DEAD/DEAH box helicase domain-containing protein + Term 10565 - 10606 5.0 - Term 10401 - 10457 -0.9 17 9 Op 1 . - CDS 10486 - 11016 417 ## SZO_12770 relaxase/mobilisation protein 18 9 Op 2 . - CDS 11057 - 11467 125 ## CD1869 putative conjugative transposon mobilization protein 19 10 Tu 1 . - CDS 11600 - 11857 138 ## - Prom 11922 - 11981 8.5 + Prom 11706 - 11765 7.7 20 11 Tu 1 . + CDS 11965 - 12162 182 ## gi|309805802|ref|ZP_07699839.1| putative lantibiotic mutacin-2 + Prom 12259 - 12318 4.4 21 12 Op 1 . + CDS 12458 - 13483 633 ## COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 22 12 Op 2 . + CDS 13476 - 14381 279 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 23 12 Op 3 . + CDS 14388 - 15128 263 ## LKI_03870 putative transporter, trans-membrane domain bacteriocin immunity protein 24 12 Op 4 . + CDS 15121 - 15792 483 ## LSL_1382 hypothetical protein + Term 15883 - 15930 2.2 + Prom 16024 - 16083 8.2 25 13 Tu 1 . + CDS 16180 - 17043 760 ## COG1396 Predicted transcriptional regulators + Term 17215 - 17249 2.0 + Prom 17430 - 17489 3.6 26 14 Tu 1 . + CDS 17564 - 18334 615 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Term 18429 - 18471 8.0 27 15 Tu 1 . - CDS 18533 - 19972 1050 ## LGAS_0106 hypothetical protein - Prom 20180 - 20239 8.2 + Prom 19985 - 20044 12.6 28 16 Op 1 . + CDS 20205 - 21287 1284 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 29 16 Op 2 . + CDS 21312 - 21980 647 ## lhv_0144 hypothetical protein 30 16 Op 3 3/0.000 + CDS 22000 - 23085 692 ## COG5438 Predicted multitransmembrane protein 31 16 Op 4 . + CDS 23097 - 23846 858 ## COG5438 Predicted multitransmembrane protein + Term 23863 - 23916 11.2 - Term 23851 - 23904 3.6 32 17 Tu 1 . - CDS 23929 - 26883 2751 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases - Prom 26917 - 26976 6.6 + Prom 26755 - 26814 7.6 33 18 Op 1 3/0.000 + CDS 26972 - 28132 1056 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Prom 28140 - 28199 5.1 34 18 Op 2 . + CDS 28225 - 28623 611 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA + Term 28717 - 28761 4.4 + Prom 28742 - 28801 8.5 35 19 Tu 1 . + CDS 28931 - 30508 1436 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 30529 - 30601 12.3 - Term 30520 - 30585 10.5 36 20 Op 1 . - CDS 30713 - 31372 458 ## LBA1932 hypothetical protein 37 20 Op 2 . - CDS 31390 - 31626 248 ## gi|309809167|ref|ZP_07703040.1| hypothetical protein HMPREF9215_0931 - Prom 31657 - 31716 5.2 - Term 31686 - 31728 8.3 38 21 Op 1 . - CDS 31732 - 32346 325 ## LAC30SC_10090 hypothetical protein 39 21 Op 2 . - CDS 32402 - 32596 205 ## LAC30SC_10090 hypothetical protein - Prom 32637 - 32696 3.7 40 22 Op 1 . - CDS 32698 - 33471 685 ## COG3694 ABC-type uncharacterized transport system, permease component 41 22 Op 2 . - CDS 33468 - 34211 342 ## Ldb0155 ABC transporter, permease protein 42 22 Op 3 . - CDS 34217 - 34558 369 ## Ldb0154 ABC transporter, ATP-binding protein 43 22 Op 4 . - CDS 34533 - 35138 211 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 35181 - 35240 8.4 - Term 35229 - 35273 11.1 44 23 Op 1 . - CDS 35328 - 35831 436 ## COG2365 Protein tyrosine/serine phosphatase 45 23 Op 2 . - CDS 35849 - 36127 182 ## FI9785_195 putative serine/tyrosine protein phosphatase (EC:3.1.3.48) - Prom 36161 - 36220 9.3 46 24 Tu 1 . + CDS 36276 - 36752 586 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 36772 - 36812 2.2 + Prom 36758 - 36817 6.0 47 25 Op 1 . + CDS 36838 - 37320 711 ## LJ0133 hypothetical protein + Term 37330 - 37356 -0.6 48 25 Op 2 . + CDS 37373 - 38764 1226 ## LGAS_0134 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase 49 25 Op 3 1/0.000 + CDS 38830 - 40779 1952 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 50 25 Op 4 . + CDS 40797 - 42056 1445 ## COG3919 Predicted ATP-grasp enzyme + Term 42094 - 42143 10.6 + Prom 42148 - 42207 6.4 51 26 Op 1 . + CDS 42255 - 43571 1105 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 52 26 Op 2 . + CDS 43565 - 44980 911 ## SSA_1825 hypothetical protein + Term 45006 - 45053 4.1 + Prom 45016 - 45075 7.3 53 27 Op 1 5/0.000 + CDS 45108 - 46628 1492 ## COG0554 Glycerol kinase 54 27 Op 2 4/0.000 + CDS 46631 - 48472 2051 ## COG0578 Glycerol-3-phosphate dehydrogenase 55 27 Op 3 . + CDS 48495 - 49199 890 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 49209 - 49277 10.2 + Prom 49205 - 49264 11.3 56 28 Tu 1 . + CDS 49381 - 49698 302 ## gi|309809133|ref|ZP_07703006.1| conserved domain protein + Term 49727 - 49771 8.5 + Prom 49706 - 49765 6.7 57 29 Op 1 12/0.000 + CDS 49922 - 52111 2686 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 58 29 Op 2 . + CDS 52136 - 52849 566 ## COG0602 Organic radical activating enzymes + Term 52850 - 52895 4.1 + Prom 52856 - 52915 5.8 59 30 Op 1 21/0.000 + CDS 52952 - 53584 758 ## COG0477 Permeases of the major facilitator superfamily 60 30 Op 2 . + CDS 53590 - 54174 396 ## COG0477 Permeases of the major facilitator superfamily + Prom 54202 - 54261 5.9 61 31 Tu 1 . + CDS 54289 - 56238 2476 ## COG3590 Predicted metalloendopeptidase + Term 56271 - 56327 9.3 - Term 56322 - 56360 8.8 62 32 Op 1 . - CDS 56372 - 57682 1325 ## COG3579 Aminopeptidase C 63 32 Op 2 . - CDS 57727 - 59178 901 ## COG3428 Predicted membrane protein 64 32 Op 3 . - CDS 59159 - 59632 419 ## gi|309809141|ref|ZP_07703014.1| conserved domain protein - Prom 59780 - 59839 9.7 + Prom 59699 - 59758 8.8 65 33 Tu 1 . + CDS 59795 - 60256 700 ## COG0782 Transcription elongation factor + Term 60313 - 60365 11.1 - Term 60309 - 60344 5.3 66 34 Op 1 45/0.000 - CDS 60349 - 61149 893 ## COG0842 ABC-type multidrug transport system, permease component 67 34 Op 2 . - CDS 61150 - 61851 232 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 61944 - 62003 16.8 - Term 62328 - 62379 1.6 68 35 Tu 1 . - CDS 62388 - 62702 319 ## gi|309809098|ref|ZP_07702971.1| PTS system, Lactose/Cellobiose specific IIB subunit - Prom 62883 - 62942 10.3 + Prom 62641 - 62700 4.3 69 36 Tu 1 . + CDS 62816 - 63268 227 ## LGAS_0198 hypothetical protein - TRNA 63522 - 63592 55.9 # Gly CCC 0 0 + Prom 63651 - 63710 7.4 70 37 Op 1 . + CDS 63744 - 64763 1430 ## COG0180 Tryptophanyl-tRNA synthetase 71 37 Op 2 . + CDS 64785 - 65258 501 ## COG2131 Deoxycytidylate deaminase 72 37 Op 3 . + CDS 65255 - 65824 300 ## LGAS_0203 beta-propeller domain-containing protein + Prom 66022 - 66081 3.9 73 38 Tu 1 . + CDS 66156 - 68843 2378 ## COG0474 Cation transport ATPase + Term 68844 - 68898 13.0 + Prom 68875 - 68934 7.9 74 39 Op 1 8/0.000 + CDS 68958 - 70937 2303 ## COG0143 Methionyl-tRNA synthetase 75 39 Op 2 3/0.000 + CDS 70937 - 71710 801 ## COG0084 Mg-dependent DNase + Prom 71716 - 71775 2.4 76 39 Op 3 7/0.000 + CDS 71813 - 72256 432 ## COG1658 Small primase-like proteins (Toprim domain) 77 39 Op 4 2/0.000 + CDS 72246 - 73133 978 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 78 39 Op 5 . + CDS 73211 - 73453 265 ## COG4466 Uncharacterized protein conserved in bacteria + Term 73469 - 73522 10.2 79 40 Op 1 . + CDS 73877 - 74452 496 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 80 40 Op 2 11/0.000 + CDS 74452 - 75837 1505 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) + Prom 75843 - 75902 12.0 81 40 Op 3 . + CDS 75931 - 76896 952 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 76910 - 76945 1.1 + Prom 76944 - 77003 9.2 82 41 Op 1 40/0.000 + CDS 77140 - 77448 494 ## PROTEIN SUPPORTED gi|42518428|ref|NP_964358.1| 30S ribosomal protein S10 83 41 Op 2 58/0.000 + CDS 77476 - 78105 1014 ## PROTEIN SUPPORTED gi|42518429|ref|NP_964359.1| 50S ribosomal protein L3 84 41 Op 3 61/0.000 + CDS 78120 - 78734 551 ## PROTEIN SUPPORTED gi|167755913|ref|ZP_02428040.1| hypothetical protein CLORAM_01433 85 41 Op 4 61/0.000 + CDS 78734 - 79036 454 ## PROTEIN SUPPORTED gi|116628965|ref|YP_814137.1| 50S ribosomal protein L23 86 41 Op 5 60/0.000 + CDS 79052 - 79888 1356 ## PROTEIN SUPPORTED gi|227521625|ref|ZP_03951674.1| 50S ribosomal protein L2 87 41 Op 6 59/0.000 + CDS 79911 - 80195 438 ## PROTEIN SUPPORTED gi|42518433|ref|NP_964363.1| 30S ribosomal protein S19 88 41 Op 7 61/0.000 + CDS 80214 - 80567 521 ## PROTEIN SUPPORTED gi|161506878|ref|YP_001576832.1| 50S ribosomal protein L22 89 41 Op 8 50/0.000 + CDS 80582 - 81256 1025 ## PROTEIN SUPPORTED gi|42518435|ref|NP_964365.1| 30S ribosomal protein S3 90 41 Op 9 . + CDS 81259 - 81696 690 ## PROTEIN SUPPORTED gi|116628970|ref|YP_814142.1| 50S ribosomal protein L16 91 41 Op 10 . + CDS 81674 - 81871 291 ## PROTEIN SUPPORTED gi|116628971|ref|YP_814143.1| 50S ribosomal protein L29 92 41 Op 11 50/0.000 + CDS 81894 - 82160 425 ## PROTEIN SUPPORTED gi|42518438|ref|NP_964368.1| 30S ribosomal protein S17 93 41 Op 12 57/0.000 + CDS 82189 - 82557 585 ## PROTEIN SUPPORTED gi|42518439|ref|NP_964369.1| 50S ribosomal protein L14 94 41 Op 13 48/0.000 + CDS 82578 - 82820 343 ## PROTEIN SUPPORTED gi|42518440|ref|NP_964370.1| 50S ribosomal protein L24 95 41 Op 14 50/0.000 + CDS 82835 - 83377 832 ## PROTEIN SUPPORTED gi|42518441|ref|NP_964371.1| 50S ribosomal protein L5 96 41 Op 15 50/0.000 + CDS 83393 - 83578 332 ## PROTEIN SUPPORTED gi|42518442|ref|NP_964372.1| 30S ribosomal protein S14 97 41 Op 16 55/0.000 + CDS 83605 - 84003 632 ## PROTEIN SUPPORTED gi|116628976|ref|YP_814148.1| 30S ribosomal protein S8 98 41 Op 17 46/0.000 + CDS 84028 - 84558 824 ## PROTEIN SUPPORTED gi|227888838|ref|ZP_04006643.1| 50S ribosomal protein L6 99 41 Op 18 56/0.000 + CDS 84585 - 84944 535 ## PROTEIN SUPPORTED gi|116628978|ref|YP_814150.1| 50S ribosomal protein L18 100 41 Op 19 50/0.000 + CDS 84962 - 85474 790 ## PROTEIN SUPPORTED gi|42518446|ref|NP_964376.1| 30S ribosomal protein S5 101 41 Op 20 48/0.000 + CDS 85487 - 85672 269 ## PROTEIN SUPPORTED gi|227525640|ref|ZP_03955689.1| 50S ribosomal protein L30 102 41 Op 21 53/0.000 + CDS 85703 - 86143 656 ## PROTEIN SUPPORTED gi|116628981|ref|YP_814153.1| 50S ribosomal protein L15 103 41 Op 22 28/0.000 + CDS 86143 - 87447 1432 ## COG0201 Preprotein translocase subunit SecY 104 41 Op 23 6/0.000 + CDS 87457 - 88107 882 ## COG0563 Adenylate kinase and related kinases 105 41 Op 24 2/0.000 + CDS 88153 - 88404 297 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 106 41 Op 25 . + CDS 88419 - 88535 203 ## PROTEIN SUPPORTED gi|116628985|ref|YP_814157.1| 50S ribosomal protein L36 107 41 Op 26 48/0.000 + CDS 88568 - 88918 531 ## PROTEIN SUPPORTED gi|42518453|ref|NP_964383.1| 30S ribosomal protein S13 108 41 Op 27 32/0.000 + CDS 88939 - 89328 635 ## PROTEIN SUPPORTED gi|42518454|ref|NP_964384.1| 30S ribosomal protein S11 109 41 Op 28 50/0.000 + CDS 89374 - 90312 1157 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 110 41 Op 29 6/0.000 + CDS 90337 - 90720 570 ## PROTEIN SUPPORTED gi|116628989|ref|YP_814161.1| 50S ribosomal protein L17 + Prom 90806 - 90865 7.1 111 41 Op 30 15/0.000 + CDS 90904 - 91545 336 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Prom 91599 - 91658 5.8 112 41 Op 31 34/0.000 + CDS 91727 - 92578 847 ## COG1122 ABC-type cobalt transport system, ATPase component 113 41 Op 32 8/0.000 + CDS 92579 - 93376 666 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 114 41 Op 33 7/0.000 + CDS 93377 - 94159 838 ## COG0101 Pseudouridylate synthase 115 41 Op 34 59/0.000 + CDS 94261 - 94704 696 ## PROTEIN SUPPORTED gi|238853451|ref|ZP_04643829.1| ribosomal protein L13 116 41 Op 35 . + CDS 94718 - 95113 644 ## PROTEIN SUPPORTED gi|238855101|ref|ZP_04645429.1| ribosomal protein S9 + Term 95127 - 95181 11.2 + Prom 95125 - 95184 8.8 117 42 Tu 1 . + CDS 95259 - 101132 170 ## PROTEIN SUPPORTED gi|167042352|gb|ABZ07080.1| putative ribosomal protein L31e Predicted protein(s) >gi|308170505|gb|AEHR01000002.1| GENE 1 2 - 140 81 46 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_1573 NR:ns ## KEGG: HMPREF0868_1573 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 17 46 1 30 67 67 96.0 2e-10 MICTPFTGQTGERGFCMKYDYAFKLNAVELYRSGQWIETPEGISQK >gi|308170505|gb|AEHR01000002.1| GENE 2 359 - 769 382 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309805781|ref|ZP_07699818.1| ## NR: gi|309805781|ref|ZP_07699818.1| hypothetical protein HMPREF9213_0530 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0898 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0772 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0951 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0599 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF0523_1127 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0583 [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9213_0530 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0898 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9217_0599 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_0951 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0772 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF0523_1127 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0583 [Lactobacillus iners SPIN 1401G] # 1 136 1 136 136 202 100.0 8e-51 MEENSKAVTTNKVREKRRKNNSNLFYIQSFLILVGIVVQSILHGFESGYTLPLVAIFLLT ISISAFQEMGITVDFNGNKHKDLVVLSVTFAVLAAIFLVLYLTVIKTDMTPLVYFGSVYG SLIVVFVISIIIVLKK >gi|308170505|gb|AEHR01000002.1| GENE 3 556 - 1008 306 150 aa, chain - ## HITS:1 COG:no KEGG:FI9785_p9785L.16 NR:ns ## KEGG: FI9785_p9785L.16 # Name: not_defined # Def: putative single-stranded DNA-binding protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 80 30 109 109 134 78.0 2e-30 MAVPRQDDRKEADYIRCLAFDKLANAIYQHCAKVQQFLCKGRLQVSTSMDEATKQVKYHH TVVVSSINFLHDPNISSPSIYFFKTIIMLITNTTIRLPYTEPKYTRGVISVFITVKYKTR KMAASTANVTLKTTKSLCLLPLKSTVIPIS >gi|308170505|gb|AEHR01000002.1| GENE 4 1512 - 2294 854 260 aa, chain - ## HITS:1 COG:SP1027 KEGG:ns NR:ns ## COG: SP1027 COG4086 # Protein_GI_number: 15900898 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Streptococcus pneumoniae TIGR4 # 36 256 43 260 324 102 33.0 8e-22 MKKINLSIIAFISSLLLILAVNTKRVSADDNSIMTLGVSLTPNQKKGTINTLNRANNGEN CKIVTISGKDLVKYLNPTGANFNNNSGVWSSALIQRQGNGNGINVHILPYNGHNNITTIT TNQYKNAAITAGISDANIYVTSAIPIDGSGALAGVYAAYAKNGIHLNQEQINAAQQEINT LSNITQQNKDKKGYSDAQLNNAIAGAKAEMAKKGNNLSDNDIRIILNNQLNINHLNNILT SQQKEQIIHLLIEIKKIWCT >gi|308170505|gb|AEHR01000002.1| GENE 5 2429 - 3235 1008 268 aa, chain + ## HITS:1 COG:BS_yveR KEGG:ns NR:ns ## COG: BS_yveR COG0463 # Protein_GI_number: 16080483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 2 215 1 211 344 120 31.0 2e-27 MLDLPQLTVIMPVYNVEKYIGRALEALLNQKNRNFKLLIVNDGSKDKTRQIAESYSDKFL YFKLINKANEGVAAARNVALAHVDTPYFTFHDGDDWVDPDYTDFFINSFKRYPHVSLISC GYWIDKEKQKKSRSIDPKRESGHLTKKEAYFKIANVSTSPVKGYTWNKCYRLDVVRKHNI KFMGDIAFMEDEVFNIEYVSLSDGVYFTSKPYYHYWQRPDSLIHVTSGLKYIPDNVRATY RVWHKILKSLRHEKKKIRRKMPNKITNN >gi|308170505|gb|AEHR01000002.1| GENE 6 3265 - 3921 747 218 aa, chain + ## HITS:1 COG:STM3079 KEGG:ns NR:ns ## COG: STM3079 COG0596 # Protein_GI_number: 16766380 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Salmonella typhimurium LT2 # 3 199 54 290 318 78 23.0 9e-15 MKVKINDIELYYQKFGTGHPIILLHDYFQDGSIFDKLIAPLSLSYTVYVPDLRGYGMSQG ESTHYYQTDAEDMASFIRKVNIKKPYVLGFGSGGNIALALASQYPNMLKKLIVAGTYLND DGIDSVHVVISNLRHFVHRKQIDHPRNVDFNFDLNNLKRITIPTLAVVGEKDWVKVDHVR AYSDLIDNGRLIVMPRQTHDSYLIHSLKCIDLIKDFCK >gi|308170505|gb|AEHR01000002.1| GENE 7 4010 - 4999 978 329 aa, chain + ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 13 321 10 316 317 279 45.0 6e-75 MNKEELHELLHPMKLIGLGGNQTLAKRIAKALNKELLETAVKHFSDGEIQVNITETVRGC DVYVIQSIQDPVNENFMELMIVLDALNRASAHSVTVVVPYMAYSRQDTKNRSREPITAKL LANLLQLTRIDDVVALDLHASQIQGFYNIPVDHLHALPILAQYFLDNGIVDRDSDSVVVV SPDHSGAKLARNFGSYFNAPIAIVDQRGARYDTEVHDMIGDVKDKTVIIVDDLIDTGSRI SSSTKSVLAAGAKKVYVAATHALLSQNAIDVLNQLNLEQIVVTDTIEHKKYPDRIVRLSV DRLLAKGIDYIYNDKSIHQIFDEQNRIHH >gi|308170505|gb|AEHR01000002.1| GENE 8 5156 - 5821 658 221 aa, chain + ## HITS:1 COG:no KEGG:LJ0105 NR:ns ## KEGG: LJ0105 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 217 1 217 219 208 49.0 2e-52 MARQKNMKRRRAILCSTFALLREKGIKNVSLKMIAERSNISKSLLQSYYPHKNKLITEII IGFKTTILRNLPQASFYSINEFAKVKAFIYLILQIGMTDKGISQILESILKDRNNKTVWD NILDDWLVANKIKDKLGTNEQVQVGLSFVVSGGTNLYFKRKELNLSAEDISNIMVKSFMT TFLNSSDQEINEAITEGHDMIVRFDMNKVFKIINSMFLEEE >gi|308170505|gb|AEHR01000002.1| GENE 9 5829 - 6254 495 141 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0105 NR:ns ## KEGG: LGAS_0105 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 5 140 5 143 279 105 43.0 4e-22 MNEDSRVELIKLSVTQTKHYKRMVECLTFLLVTLLFSTLTFMNPYFMTKQLAKESNYVIV DRQINKKFNNLANVLEVEKKETNSALLNSKQTQPMARELVDYVIGLDWFKTDNSEIAHKI KKQIYKFDSNVSSGAIEVQKN >gi|308170505|gb|AEHR01000002.1| GENE 10 6314 - 6655 217 113 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0105 NR:ns ## KEGG: LGAS_0105 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 2 111 167 277 279 70 47.0 2e-11 MLLANLHTLFLIINVVVIITCVFVALALLKEYMSILKGRSLIHLTSVAISISSLMIMLIF ILLAALPLIFNVESWNILGLFLEIASGIFLELVFVAAILFVISTVISQVTSKL >gi|308170505|gb|AEHR01000002.1| GENE 11 6673 - 6804 61 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIKKITSILSSENINAIMNDIEYRNIDKILVRMRRYFERLRFL >gi|308170505|gb|AEHR01000002.1| GENE 12 6866 - 7180 352 104 aa, chain + ## HITS:1 COG:MJ0866 KEGG:ns NR:ns ## COG: MJ0866 COG0537 # Protein_GI_number: 15669057 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Methanococcus jannaschii # 4 81 30 107 129 65 43.0 2e-11 MSDNPEVEGHMLVFAKKHFPTLELADQSSWYYIGEILNELGKRLKSQGYDGYNLLSANGV AAGQSVKHFHFHVIPRKKNDGINAWPNFETKPNNTSDFFEKVKF >gi|308170505|gb|AEHR01000002.1| GENE 13 7418 - 7822 352 134 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00111 NR:ns ## KEGG: LCRIS_00111 # Name: not_defined # Def: transcriptional regulator, xre family # Organism: L.crispatus # Pathway: not_defined # 2 127 16 141 274 101 46.0 1e-20 MLTEEEMSKGIIGKGTYSKVIHGKQNLSSCLLIKILLENDIDIDYFISLIKKDYSSKESL KENMLSQRMAVAFNNHKINDAEECLREIKKLGTNPLFEQRAIIAVHYLKDQLDSLSLEFK KQLLKSLVRQIIGY >gi|308170505|gb|AEHR01000002.1| GENE 14 7831 - 8199 190 122 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00111 NR:ns ## KEGG: LCRIS_00111 # Name: not_defined # Def: transcriptional regulator, xre family # Organism: L.crispatus # Pathway: not_defined # 2 122 154 274 274 125 49.0 5e-28 MLRLFGSAMMILPPKEIELEMQLFFFRLNRMKIESPNMIERYAILCCNYLHWKYTYNKHL DNNTTKCINFLKFLPKSSRMFLYTVSGKYYYYLFNNQVEEAKNIKESLLKLGCTEGVENW PI >gi|308170505|gb|AEHR01000002.1| GENE 15 8652 - 9857 931 401 aa, chain + ## HITS:1 COG:SPy0543 KEGG:ns NR:ns ## COG: SPy0543 COG0477 # Protein_GI_number: 15674642 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 394 1 395 402 234 37.0 2e-61 MKKERKNIFLLLSAKVISNIGDNFFDFSNNTWIASLGAKGQKILTIYQITESITGIVLNV FGGVFADNYNRKKIITITDLIAGVACLVLSIVYPTKFFVFAMILVNIILAILSSFRSPAY KSIIPNTVHKDKIVKVNSNLEICNQLVSVSSPVISLIAYKVFGIGGALLIDGISFLISAL LNNCLQVIHKKSDENIRHIKNKIIKNIIEGIEYITKNSQVAILLIVSSAVNFFLAGYNYS FPFVNKAFGTGNSTYTILLVSQSLGGIIGGIISPKLTQNDSISHLLNLLTFCGLSIAGIY LLFQWYHSLLTVFVFMFLFHMLLTAYNIDFFSIIQTKVDDKYLGRVFSVVFTVAIIFMPI GTAVFSYYSKAYLVENYIIIGIGIIIVSIVAQVLSRFKGSK >gi|308170505|gb|AEHR01000002.1| GENE 16 9858 - 10466 519 202 aa, chain + ## HITS:1 COG:no KEGG:Smon_0662 NR:ns ## KEGG: Smon_0662 # Name: not_defined # Def: DEAD/DEAH box helicase domain-containing protein # Organism: S.moniliformis # Pathway: not_defined # 156 202 986 1032 1032 76 76.0 6e-13 MKFDEEYYKEVIKKYNYNPLLFNKIDFQLPGISKNEMQLMWLCSYHSLKNKKVNCENTLF TTGIGLSGVPHMGTISQIIRAIKLQRGGNKVQIVLGDIDAYTGRHISWTQTQHLKEKYRN FILKLGFNFQTGILRAQSDKSVFLTQAKIAGYFKDEIADEISDFDCSTKKKTKSTIKRNR EKLQELLANYPSYFLDRLQKLR >gi|308170505|gb|AEHR01000002.1| GENE 17 10486 - 11016 417 176 aa, chain - ## HITS:1 COG:no KEGG:SZO_12770 NR:ns ## KEGG: SZO_12770 # Name: not_defined # Def: relaxase/mobilisation protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 176 268 443 443 258 87.0 8e-68 MNTNAKMKESKGYEYWATKHNLKTMAESVIFIREHGIKSVKQLDEYIEKAADERQNLQDK IKVIDIEIQKLSATMDQVHTVKKYRAYYKEYKANPSDKAFFEEYKAHITLYENSLSELKS SYSKLPNSKNILDRLDKLQEKKNTLMQEYSSTKSTMDELYQIRKNYGIYMGKEMKR >gi|308170505|gb|AEHR01000002.1| GENE 18 11057 - 11467 125 136 aa, chain - ## HITS:1 COG:no KEGG:CD1869 NR:ns ## KEGG: CD1869 # Name: not_defined # Def: putative conjugative transposon mobilization protein # Organism: C.difficile # Pathway: not_defined # 1 131 118 248 443 217 92.0 1e-55 MVTGKCYQSNKRSYHQIRYQSDKLCKENNLFVIDEFYESYKRKYKTNGKSWYENEQFKKG TSWKSRLQFDIDRLLKQSKDWEEFLKKMAELGYEIKHGKHIAFKPKDKQRFTRAKTIGED YTEERLRERITVRSAY >gi|308170505|gb|AEHR01000002.1| GENE 19 11600 - 11857 138 85 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRFYYVEKISYSYFIFTIVSLTIFIISLIEILIILNCTPKVIQKITRGIFIHLSCTMKCN RKDMFVWYTKVAKQNIIVLCIYLRE >gi|308170505|gb|AEHR01000002.1| GENE 20 11965 - 12162 182 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309805802|ref|ZP_07699839.1| ## NR: gi|309805802|ref|ZP_07699839.1| putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 09V1-c] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 03V1-b] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 01V1-a] putative lantibiotic mutacin-2 [Lactobacillus iners SPIN 2503V10-D] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 3008A-a] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 2062A-h1] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 2052A-d] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 09V1-c] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 03V1-b] putative lantibiotic mutacin-2 [Lactobacillus iners LactinV 01V1-a] putative lantibiotic mutacin-2 [Lactobacillus iners SPIN 2503V10-D] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 2052A-d] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 2062A-h1] putative lantibiotic mutacin-2 [Lactobacillus iners LEAF 3008A-a] # 25 65 1 41 41 77 100.0 3e-13 MIHYVRKLFDQIFYAVYIIRRCLTMEKLNHNAVTSLNEVSDSELDTILGGSRWQYYRKSK LKISY >gi|308170505|gb|AEHR01000002.1| GENE 21 12458 - 13483 633 341 aa, chain + ## HITS:1 COG:alr7297 KEGG:ns NR:ns ## COG: alr7297 COG2274 # Protein_GI_number: 17233313 # Func_class: V Defense mechanisms # Function: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain # Organism: Nostoc sp. PCC 7120 # 13 322 380 698 713 124 28.0 2e-28 MHGQELYNDILSLQSIINMTNQLFSISSAVILIYLGINLVSLHIINMGDLVLFQTIFISL MSSVTQFQTSLIELSNLSVYSKKVQSLFTKDEQRQDKVIPNNDYILKAQDVSFGFYGNRQ VIKDFNLTIRPGEKIAILGESGSGKTSLLNVLLGVYKYQGDIYYGIKDFRKKLGVVTQNM NLTSGPLIKNLIGNSSITPKIMDEVNYAISAVNMMETIDKLPKKIFSNLFQNGKNLSGGQ IQRLLVARSLLNDSKFLVWDEPFSNLDNLNREKIYSNILNSARYSDKTLILSSHHIDCVK YMDRIIFISSRGQVSVGSDEELRNNIEYQQFIGINKGENND >gi|308170505|gb|AEHR01000002.1| GENE 22 13476 - 14381 279 301 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 6 301 9 307 309 112 28 9e-24 MTKSILSIRNLSKSFGGQKVLDNLNMEIKTGEIYGFLGVNGAGKSTTMKIILGLLPKDRG EIIALGHSLPQNRSQVLPEIGALIEEPSFYPNLTGFENLQLIQELANLPKENIKVAMEAT GIYYAKDKLVRNYSLGMKQRLGISMALIKFPKFLILDEPTNGLDPDGIHQMRQLIRSLPQ KFNMTVLISSHILSEIENLADTVGIIKDGHLIYEGSINCLLNQEKKYRLKVNDLEKAIHI IQHFDSNITITKDNDTLLLSLPDHAFVPDLITQLVHNELQIFEIYGVKKTLESVFLYLTK E >gi|308170505|gb|AEHR01000002.1| GENE 23 14388 - 15128 263 246 aa, chain + ## HITS:1 COG:no KEGG:LKI_03870 NR:ns ## KEGG: LKI_03870 # Name: not_defined # Def: putative transporter, trans-membrane domain bacteriocin immunity protein # Organism: L.kimchii # Pathway: not_defined # 1 210 2 214 248 86 30.0 1e-15 MKQLRTEIKKYNRNRLWLPILVLFLFSIYWCSVSNNIQINKNSSNIFQTLVFNLYTINNL IIPFSVALLSYRMVMIDRKNRMFSVLFTNGGNEIGLFLSKYILGILILFIGFACQLIFTI LSSKYYHTSINHNELILFVVAMLLGSGTMLLIQLLLSFVIESPIIPIVIGLAGSFLSMLT SGLLSKQITIFIPWEYLSTLNPYTINDSGIHPFTNYQFYFSLVLIIHLLLLIISIWLVFK ERIIHE >gi|308170505|gb|AEHR01000002.1| GENE 24 15121 - 15792 483 223 aa, chain + ## HITS:1 COG:no KEGG:LSL_1382 NR:ns ## KEGG: LSL_1382 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: ABC transporters [PATH:lsl02010] # 5 220 1 215 242 108 31.0 1e-22 MNSRLIKWELKKQQHTYLPIILCCFIIVAVFLGSFLYFMNQQVFGKDQTQWLALWGEIGL FYAQLFFPLLIAIIVNAVWYQELEQNSWHMSSLLPIKGDRLLIAKVITASFYSLLSQIIL IILYYLIACLAHFPISHVNPFTFTWWGLLGWGGSLSIIALQFFVSIMFSRFTSLIFALIL GLGNFVTLLMGPTIFNLYPYSQIAVGMRVRAYENMSFSEFGFS >gi|308170505|gb|AEHR01000002.1| GENE 25 16180 - 17043 760 287 aa, chain + ## HITS:1 COG:SP0141 KEGG:ns NR:ns ## COG: SP0141 COG1396 # Protein_GI_number: 15900079 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 282 5 281 287 213 44.0 4e-55 MSEKSLELGELFKELRLARGLKLKDVARENLSVSQLSKFENGQTMLAADKLLIAIQGIHM TFSEFGYALTQYQESDLFKIGNQLVNFQAKRDVEGLRDLLKNYRPRETYEVYHQLNKLVL KSAIHSLEPSFEITNEEKEFLTSYLFAIEEWTEYELYLFGNTLFILSDEDLIFLGKAFIE RDKLYKDLSEHKKRAELVLINLILVLVEHRDFYYASYFINSLEKMLNYQDMFARIVLNFL KKVMNYIENGKVDLSDIEAYIDLIERLDNPTLVMFLRTNLEQIVNNQ >gi|308170505|gb|AEHR01000002.1| GENE 26 17564 - 18334 615 256 aa, chain + ## HITS:1 COG:SMc01214 KEGG:ns NR:ns ## COG: SMc01214 COG1063 # Protein_GI_number: 15965330 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Sinorhizobium meliloti # 4 198 77 285 347 72 26.0 6e-13 MDNGKFVVINPNITCGKCYSCLNGYENLCSKEKAIGTNVNSGFQGWLQVPSTNLEYIEKP DLKYIFTDPLAVVLHGMSMIKILSNYKVIVLGNGSIAKILVWRLNLLGIKPDVMCRSGIW NNKELTISNLYKLTEKVSPNYYDIAFECIGFKQSETIKKSLGMIRPKGEFICFGVFPEDY SPTLKVRRLFEKEITILGVRSFTKKDFKYAKNILDLHGSKLISRLCISVVSGENINAIMN DIENRNIDQVIVRMKR >gi|308170505|gb|AEHR01000002.1| GENE 27 18533 - 19972 1050 479 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0106 NR:ns ## KEGG: LGAS_0106 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 472 1 506 508 494 52.0 1e-138 MRLRIKITSFFITASILISTLAGTTANAAGFTKKDLNNIHRIQEQYALLPKMRYNQKNIY HKEPHLSEPFDPGILSAGYISSQLAYINYYRSMFGLNKINTDSTNNDNAQIAASVMAATQ ASPFVNQHGLPSLVKPPFISDMFWNIAKIVTASSNLNFNINNQTAGEVVTDLLTDRFNLD GSDTGHRAWLLSTKISKTGIGAAYGDNGYRYSVQQVAFAADSYAAPCQTSVLYPASNLFP IELLQGSNIAWSLYLSEKRINHLPKITITDLDDNQSYKVNHVNNFSKQGFGYFSTIITYY PANMPLILGHQYEVNIHGLYKYTFKLFSLDPTKPLPLDTDDSNKNKHRNNAQKIKSALLS KAEKLRDSLNKDRAMNINLFGKSYQDGKQFYNLGAQQWFHDFFVVDVPDLTAGIIDITDK TIDKNIYTSPYKQYRRNTFTQLQAGKSYAYGQIIQINKTNWYYLGPHRWFRQQVSRHTL >gi|308170505|gb|AEHR01000002.1| GENE 28 20205 - 21287 1284 360 aa, chain + ## HITS:1 COG:STM0380 KEGG:ns NR:ns ## COG: STM0380 COG1181 # Protein_GI_number: 16763760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Salmonella typhimurium LT2 # 4 355 3 360 364 304 43.0 2e-82 MNKKIRVGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVL EDPTYQIENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDD VLAAAITMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKP SNQGSSVGISHVTSAADYEKALAEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQ ITNAQGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSML SSDNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYALDRYAHKKTLLHKHD >gi|308170505|gb|AEHR01000002.1| GENE 29 21312 - 21980 647 222 aa, chain + ## HITS:1 COG:no KEGG:lhv_0144 NR:ns ## KEGG: lhv_0144 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 3 219 9 246 246 120 38.0 5e-26 MQEKMLVTSQVAKQLGISVATLRKYSSEIEQVTGNHMYFVRNNKQSRMYTPQNVRLLQTV LTLINQKKLPYKEAISQLFEVHASDKMPQVNKVNSSYNMIDAKQVVQLLGMLQKTIEQQN VAISGLKAQMEQLSQQNSQLLIDLNSKKDKEVDPKILAMPDISGVEPINSSESAETIHEE ILRKARENQQKHPNITMHRTLADMQLKDKHHWWDPLLKFIQK >gi|308170505|gb|AEHR01000002.1| GENE 30 22000 - 23085 692 361 aa, chain + ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 14 357 13 362 370 181 32.0 1e-45 MSKKQRLIISVVILLLGLFCSLWIYFSSKGLTHPVGRIIDTNIHDELVNKVEDTYRNKDE VRHQIIHVKVLSGKHKGETHTISNYYSPSQVLTQKYHGQQMVIMSFVKNKPTIVSPKRDG IVVFAIFLMISLLILITGFNSISILLSMILNSVVFYFIIKFDIMENGTQIFAIYGTAVVL FAFISLIIVQGCNKKMLVTLASTLLGVFISFGMCYLLMRLTNEKGIKYEAVAYATQDPRA LFLAQTLLGVLGAVMDEATDIVTSLYALCQHKPHITFKELFNSGRTLGQEIMGPLINVLV LIFMAESLPMAILLLRDNNTLIYTCQFALSLGILQSLVSAIGIVVTVIFSALCCYVFIPK H >gi|308170505|gb|AEHR01000002.1| GENE 31 23097 - 23846 858 249 aa, chain + ## HITS:1 COG:L17781 KEGG:ns NR:ns ## COG: L17781 COG5438 # Protein_GI_number: 15672790 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 22 249 21 248 253 122 33.0 5e-28 MNNIFVLLLLLLLGLMILVGGKTGLKSYLSIIINALLIILVALLISWGINIIGVAIVFIP LKLATIIYLGTHDYKVARNSFLTALAISCIVIVLIIMFEYVAQAAGFGDQSGEELVGLSL QAGISFPQISIVVAIFSTLGAIAEASVAMSAGILELKRHDKDITIRQIFKSAEQMGDDIL GTAINTILFGFFGSFLPLFIWFMRLNYSLVEILNDKLFVSEALIVVYSFVGVLLTIPLTT IFLVKGLKK >gi|308170505|gb|AEHR01000002.1| GENE 32 23929 - 26883 2751 984 aa, chain - ## HITS:1 COG:alr4773 KEGG:ns NR:ns ## COG: alr4773 COG1501 # Protein_GI_number: 17232265 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Nostoc sp. PCC 7120 # 364 646 465 748 779 120 29.0 2e-26 MTSVLKDNQKQNYLSDLCQVIKKKDYYELIFKNNEIGKLYIINDEIFRLIIQPKGIEELP SVPFSCTKIKQNQKDYFELSKLLITEETFIIRNQRYSLRIQKKPALISIFDERTNHYRMK QKQPLLFQDNCTTETLTQNDNEFYFGCGMQNGHFSHKGNTVQIKNTNLTGLGAVACPINL FWSTAGFSELRNTWSNGIYDFGQQSPSYSSIMHFCDIFDNFYILGDNPAKLLANYYQISG QPLFLPKFALNLGYISDLSSKKVDDTSDIAIHKQNWLTAIEDKIKLFAKKEFPLSWIIPD FKSKAAFDINSTKNLSDYNINFGSENLKDNGTFGIIQLPMNNTDNLTIIDNLRNMHNQLD HQNQRIWLMTNNGWAGIHTYSATVNGGVGGEWEELSAQITSFLGLSLSGQPNFGNALDGE YGGGNAQVNLRDLQWKIFTPLLFNMDGEGNIEKTPFAFNNKITKINKAYFNLRKRLTYYL YNLLKQAQDGFPMIRPLCFNFPRETYNYTTRVNKEFMLGDSLLIAPITNGRENHDGLSIK DNIYLPDDRTVWIDPFTGKKFPGGLSYDQLTFSSWHLPVFIKQGSIIPNNLRDANIFPCN QETAILYDDDGISRQYQNEQFATTKIDSSLQNKTLVISIAATQGDFDKLDLQQPTYLTIF TDNHPQNIIAKRNNEVINLVETNDIDTLDDQTSGFSYIANFNLWPEFSEYTQSNHNIIRI KLVSQNIKQDHFELTINNFTYCNDVQMHAITDSALIIPKDFEIMPKSVTSKSMTVHWSNI PTPINDHLTADIELNGIIHTNISGNIFTLHELQSNTRYRLRIRNRYLNKVSEWSENITGK TNPDPLEYAVKDIKISANLESTLEMPLESLIDFCPASEWLSKEKITTNNPLVLTINFDQI YKLSRMVYIPRSRDHKGHILKIRIAISKDGLNYSEWSAPYDWNDDAKNKVIGLRDVVAKS IKLHITDAVDGVVSGKELLFFKAK >gi|308170505|gb|AEHR01000002.1| GENE 33 26972 - 28132 1056 386 aa, chain + ## HITS:1 COG:SPy1694 KEGG:ns NR:ns ## COG: SPy1694 COG1820 # Protein_GI_number: 15675552 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pyogenes M1 GAS # 1 379 1 376 382 377 49.0 1e-104 MSYFLHAKKFFLKNHVTNGGYLEIQDDGNFGFYYPEKNKPTNVVIKEYADKLVAPGYVDT HIHGLLNEDVMKSNWNGINKISEGLLQTGVTSWLPTTITAASSTLTHICQMIAEHKGEET GAKIQGIHFEGPFFTPEHGGAENPKYMTDPSMTEFDKWRAASKNMLIKISLAPERRGAKE FTRQAIKEGVVVSLGHSSANYEETMSCVDAGATMFTHTFNGMNTLSQHTPNIIGAAFSSN LTIAELICDGHHVEPAAIKALISAKGYEHIALVTDCMQAGLMPDGDYMLGELPVYVKDGM ARLIGKNNLAGSVLLMKDAVKNLVDWNIATPEQAIMMASYIPAKSINKLKYCGVIEPDHP ADFIILNSDLTLVETYVNGISRYKNE >gi|308170505|gb|AEHR01000002.1| GENE 34 28225 - 28623 611 132 aa, chain + ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 128 1 125 134 116 48.0 9e-27 MAKELILISHGKLAEEAKKGIELIMGPQDNIQAVCMLPEDGVSDFQKKFEDATADFSVDD IVVFADLMGGTPANTVSRLIKAGLNIKLYAGLNMAMIMEWLNCQMVDDRVPDYVKAGKDG VVDVNAFLNTDN >gi|308170505|gb|AEHR01000002.1| GENE 35 28931 - 30508 1436 525 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 3 514 4 518 535 128 24.0 3e-29 MALKYVEKRYIFIFVILSFFKSLQAAFIAVVSQQMVNWVNKPKLSYLFTIVVVALVGLIV FWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIETDKIEA ELQIITNVIQFITAIIASIAGSLPLTIVFMLASFWPGIFQRILGRNIEEKSKEWDKSNSK YTENVKETEMFSASARLYNTENNLWKRFKSSANTMEVALLKLNFWQGFTNETINTIAYSV ITIAPIALGVYLVSIKNITLGTLIMVSQLSNNFVNPVIIISAYLNDMRVAKHMWEKIQDL SQKSNCLQNSKLGIDYFNGIELKDVAVAYKDKDVFSNVSFDIKKGEKVLIVAPSGWGKST LLNTLLGNINIKNGRYLINGEDMTTDIKKVHNYFSYINQEPRLLDDTILYNITLGCKDDQ NILNDVISKAGLEDLIKEKGWDFKVGQSGSHLSGGQKQRIEIARALFFNRPVILADEATA SLDPVLAKQIHETLLKEYHGTIIEVAHHLTTEEKGMFNKVIQFGN >gi|308170505|gb|AEHR01000002.1| GENE 36 30713 - 31372 458 219 aa, chain - ## HITS:1 COG:no KEGG:LBA1932 NR:ns ## KEGG: LBA1932 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 48 219 39 215 215 101 39.0 2e-20 MSISKKVILPSVILSLLGSMVACQNASFSADTSLHKSTADLSAQIIQQVKISNSNDNIYV KVGNKLKVDYDGPKNNAPIVKIKNHYLEVSSPHHFSLNFFSRNTYNVTITLPQNELKNFS INSSNGNVKVEEIHTDKGYIVTSNGNIIISKLISRFGFELSSSNGNITVEHANFSGYNLS NSNGSNKFRGMHVSNSFAKITSKSNVLDINNSNGDIDIN >gi|308170505|gb|AEHR01000002.1| GENE 37 31390 - 31626 248 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809167|ref|ZP_07703040.1| ## NR: gi|309809167|ref|ZP_07703040.1| hypothetical protein HMPREF9215_0931 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9215_0931 [Lactobacillus iners SPIN 2503V10-D] # 1 78 1 78 78 124 100.0 2e-27 MEDIFIKLKAKWKYVGIIHIIYKNPLIQMKTNDYPKKYLNIQDTQIIENQINKVFSILAN LAFSDLIDQNRSTIIAYI >gi|308170505|gb|AEHR01000002.1| GENE 38 31732 - 32346 325 204 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_10090 NR:ns ## KEGG: LAC30SC_10090 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 199 84 282 286 150 41.0 4e-35 MISTYYGQNQQKLNDIKLLIDKTNLSKEDKNEEKLLVDGWIESLKKEPKSFDMELRHKLK DKIFSHPNLDKNTITLYCNFMVFYDLDSNKIIAKKIIQQYKDSDNVDIKIAILAIISNIL AIAIEKNQIEDIQLFIDTADEIPTLPELFFYKNTIFFFKNLIIYKQTKQNNSLINCKNAI NTIINLDMKSYGDKIHKFLNKHTK >gi|308170505|gb|AEHR01000002.1| GENE 39 32402 - 32596 205 64 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_10090 NR:ns ## KEGG: LAC30SC_10090 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 63 1 63 286 99 80.0 6e-20 MTIGELLKEYRISQAKNQKDFTHNGIIISQSYYSKVEKNTHRITADSLIKLLHFNNIPLW TFFQ >gi|308170505|gb|AEHR01000002.1| GENE 40 32698 - 33471 685 257 aa, chain - ## HITS:1 COG:alr3052 KEGG:ns NR:ns ## COG: alr3052 COG3694 # Protein_GI_number: 17230544 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Nostoc sp. PCC 7120 # 2 257 11 267 268 61 22.0 2e-09 MRIQKIISSIWKQSIEEFLIYRATSLITFILAVVFLLIELFVGDIYFSNSENANWTRNQY FILITFMNSATYIYNFFFVIGHENLVEDILEGELDYNLIRPVYSYWYSIGTHLDIPSIFN LILSLGLLGYYLSLENVGIIGYAIMLINLILTAFLIFLLNQLAVTLSFWVDGLTSLFGMI EDLISYASRPKQIFPMIIQQIFTFVIPVLLASNLPVEMIFHKHNYWLLGYFIMIDILLYY TSKLLWNKGIKHYSSAN >gi|308170505|gb|AEHR01000002.1| GENE 41 33468 - 34211 342 247 aa, chain - ## HITS:1 COG:no KEGG:Ldb0155 NR:ns ## KEGG: Ldb0155 # Name: not_defined # Def: ABC transporter, permease protein # Organism: L.delbrueckii # Pathway: not_defined # 1 246 1 247 248 171 47.0 2e-41 MKKYLPIFYLGIKSSLVYRGNYLIKIITQVLNLIVTLWMWCWLMGNNVHNFNYLAKYLIM TNTLSLLFSIAPTFTLADLIQSGKLSNYLTKPVSLYWYLYLTYIGSQLPIIIFYLVLGLY FNLNIGFINLILYLIFCSFMFFNLALVFGSLGFWLINMWPLKSGLFAIYLLFGGLYFPLS MLGKNIYSWLQYNPFSLVTDVPAKLIASNINQTNIYYLAVAVWLIIFYCIYKKTFKLGLK KYEGVGV >gi|308170505|gb|AEHR01000002.1| GENE 42 34217 - 34558 369 113 aa, chain - ## HITS:1 COG:no KEGG:Ldb0154 NR:ns ## KEGG: Ldb0154 # Name: not_defined # Def: ABC transporter, ATP-binding protein # Organism: L.delbrueckii # Pathway: not_defined # 2 113 195 309 310 107 46.0 1e-22 MNFLREENKRNKTTIIITSHNIRDIEALAQRLIILANGEIVFDDKLEKLPINISTDDHFV VKYLVNNEPESKNISENDLKNFMQTLSTNQIISLTREGINLEEIILEIYKKVK >gi|308170505|gb|AEHR01000002.1| GENE 43 34533 - 35138 211 201 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 36 198 19 180 311 85 31 7e-16 MIVIKNLSFDYVTFEKASGLKGTIEDLFHRKPQYVKALKNINLNIEDGSLIGLIGPNGAG KTTLTKLLTGIISPSSGSVNIDTFIPMQRKTELLKEIGVLFGQKSQLSWDLPAIDTLNML ASIYSLEENRFKKRLKELTKMLNAEDLINKPVRKLSLGQRVKCDLICSLIHEPKYLFLDE PTLGLDLMTQESIYEFFTRRK >gi|308170505|gb|AEHR01000002.1| GENE 44 35328 - 35831 436 167 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 19 165 153 297 298 84 31.0 1e-16 MEDLEKWASNDPNFGKRQMFAAYNDMINSSSAQNAYRHFLELLLANNNDNQAALFHCTAG KDRTGFGALLILSALGIPFDTIKKDYLLTNTTTKDFINSMLKKAKDDGGNDNVVKATYDI QSVCAEYLDYVLNNINNNYGSIHNYLRNTMKLSRKDILDLRKIYLED >gi|308170505|gb|AEHR01000002.1| GENE 45 35849 - 36127 182 92 aa, chain - ## HITS:1 COG:no KEGG:FI9785_195 NR:ns ## KEGG: FI9785_195 # Name: not_defined # Def: putative serine/tyrosine protein phosphatase (EC:3.1.3.48) # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 3 70 4 71 267 90 63.0 2e-17 MNNYHKRLLNIKSGRNFRELGGYQTLTGKKIKYHKLLRTGNLADLLPEDSNLLENYNVKL IIDFRSEKEKINTLILFLTKQNMNLILFLARI >gi|308170505|gb|AEHR01000002.1| GENE 46 36276 - 36752 586 158 aa, chain + ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 155 1 151 152 99 39.0 2e-21 MIKGYNNILVPVDGSESAELAFDKAVAIAMENAAHIDILNIIDTRQFMGELQDTLISGDT VYQMTNDSEEYLKSLQKKAEEQFKFKDVSYHIRYGSPKRIIAFDFIKDHNNDLVVMGATG MNAVERMLMGSVTEYVNRNALADVLIVKTDLNNEKIKK >gi|308170505|gb|AEHR01000002.1| GENE 47 36838 - 37320 711 160 aa, chain + ## HITS:1 COG:no KEGG:LJ0133 NR:ns ## KEGG: LJ0133 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 160 1 160 160 171 60.0 6e-42 MEQLTMVSLADKLSAQHDIIISDKQTINVADIFEQIDNLHILQKSAKEYIDMTQEQYYDQ ESDGKLTILQMDKPLKLLKDRILTNHVDGYVDQHEINLTYNHESPYIDGGYNRSVDLNVL IYSLKVIGAVEQIAADDLRKILSKDAVVSLIIAAHSLASN >gi|308170505|gb|AEHR01000002.1| GENE 48 37373 - 38764 1226 463 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0134 NR:ns ## KEGG: LGAS_0134 # Name: not_defined # Def: 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase # Organism: L.gasseri # Pathway: not_defined # 27 463 31 469 469 565 64.0 1e-159 MNMFRNISKALENIVKKNRAEENNITNNSIFDVMQHYTQVGEYSVGAPEGTPGDKDFDLI VYKNDNGILYQALRPKKAENLAPLFVRKFEPRLNRFRAFQNKKNGRRFIVEEHLDEFINY VKNYTRTNTNSINIGIITDTHQKDVDSLTSYGRLGLLHLKEFNYLEERGFLKLKVHLGDW IDGSDPGLVDEQELINLRNCFSSKRIDYALIKGNHDENDKFDALHEMLPSFPEREFEDIM WTNMYRQHNIHYISRQHGVAYFDYGDLRIIMINTSDVPYILDSNGKKKYNTQHTLAIRED QVQEIIEILEKSVNKQIIFMGHAVPIDRKGMNSLKYNGRSLHELMVAFNQREKGYLNSHD VPLEYTLTNKFDFSNVVKGKIIAYFAGHAHAEDQYRINSIQYITFNCSALVSLSDSNKYN QRYNRQVDQRTEYAGYVVNVDLDKKLLQVFGYGAASKRRVYRI >gi|308170505|gb|AEHR01000002.1| GENE 49 38830 - 40779 1952 649 aa, chain + ## HITS:1 COG:L0095 KEGG:ns NR:ns ## COG: L0095 COG0367 # Protein_GI_number: 15674210 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 624 1 615 625 657 50.0 0 MCGICAFYDPQLENKDQVIEQMMDTIVHRGPSSAGKFTNDEVALGFRRLSIIDLRGGSQP IFNEDKSRAVIFNGEIYNFKPLREELINSGHTFTTKTDTEVLLHGYEEWGMDGLLKRIRG MFAFLIWDDNDQTLYGARDFFGIKPMYYTNNDGRLLVGSELKSFLAFPYFKKELNVEAVK PYLMNQYNDLNETFFKGVYKFPAGHWFAYKNGKFDIHKYWDAEYVQNSLSFEQTLDKINE DLKETVELYHNADVKVGSFLSEGVDSSFVTSLLNPDDVFSISFDDATYDEASKAKALADI KGWTFYSDKVKAEEAMHDFPEMQYHMDEPDANPSIIPLWYLCKLARKHVTVALSGEGADE LFAGYVNYGMHTHNNIIKVFTSGLKKIPKNLRFKLAKGIKKLPNFPGKVHIYTNLASPDE YYVGQSVIYDINYPTIFSAKDANDILQPKYQNKLTVNSNYQADFAKVKNLDSVKQMQYID LHHFMLNDIEQKADKISMAHSLELRVPYLDKKIAELANSIPTKYLVNKYDTKYALRKAAE RVLPAEWAKRPKLGFPTPIKQWLQDPKFYKQVRLLFAEDFVNNIFNQDKILAMLDNNFSG DGSDRRKIWTIYTFLVWYKLFFVDYENTVKKYNHVQPEVASLLASGKLV >gi|308170505|gb|AEHR01000002.1| GENE 50 40797 - 42056 1445 419 aa, chain + ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 4 412 6 407 408 414 51.0 1e-115 MQKKFTPILLGSDINVYGMARSFHEAYGIKVKTLAAGHLAATRYSKIVDVEVHPGFEDDP TFINVMRSKMIEYQDHSEPVILIACGDGYVELLAKHKDELSATFVIPYVDYSLLNKLISK ENFYEIADKYGLPYPKTQIIKITDYQTDDYLKRMSFGFPVALKPEDPVSWLDCRFEGRKK AFTIHDATELKDIVTKIYTHGYKEDLILQDFIPGDDSKMRVLNAYVDKNHKVKMMCLGHP LLEDPTPQSIGNYVAILPEYNLNLYNTVKTFLEKINYVGMANFDIKYDERDHEYKFFEIN VRQGRSSFYVTLNGCNLAKCYIDDYVEDSLKDQDPVYANQDPQKHVLWLGVPTKVFKQYA FENEYKEIAEDLLKKKRVGTTVFYKADCSFKRWLLMKYMFYKYIGRYKAYYQVNKGRFF >gi|308170505|gb|AEHR01000002.1| GENE 51 42255 - 43571 1105 438 aa, chain + ## HITS:1 COG:L178227 KEGG:ns NR:ns ## COG: L178227 COG0446 # Protein_GI_number: 15674108 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 1 410 1 419 443 149 28.0 9e-36 MHIVIIGGSFAGVSAALSCKTYYPQAKITLIEKGTGLAYIANSLNEYLKGKLADLKNGYA YSIKDLQSKGINCLLNHEVTKIDSTNQILYVKASGDSMTLTYDYLILAMGGKGFTEEPVA ALIDPHSYESSLKSFEKLQKAKMVLIVGGGPIGIEACEAYQRAGKDVTLLEAYPSLAVKY LDKPISQAVERLLVSHGVNVYKRELVNKIVPVNDTIAYQVITNNSTYLSDCVQFATNFTP NINLVENQIALLADRSIAVDEYLATSLKHTFAVGDLIQIPVGLHRKSLYWPSIQHSITSG SIVAANLIVPTKALPSSETCLYSKLYGYNLLSLGMTASSAEEEGIVTFTSTYVSQKGGQI FIISKADDGQILGIQWLSLAPLQAELALLMTGLQAKFSEDDFLVQAPPFYSGKSLIQFDL YKALYHHKSLRQKEAHLC >gi|308170505|gb|AEHR01000002.1| GENE 52 43565 - 44980 911 471 aa, chain + ## HITS:1 COG:no KEGG:SSA_1825 NR:ns ## KEGG: SSA_1825 # Name: not_defined # Def: hypothetical protein # Organism: S.sanguinis # Pathway: not_defined # 1 466 1 474 475 171 28.0 7e-41 MLVTALLDNQSALRYQILNILLEQSQPISLKILMDKVDISKQTLTKYLDEINQMYQEEEL EACISTNPETIRIILDATLSFKDLCWPLIRNSLSVHVIELLLNHPNLSNYQMASTLMISE ATLSRQLVQLNQALKEFSIQIKNGMWYGPEEQVRYFYYEFYRHFYPDNELFRLKHDANLD QSLAIFEHRLSTNLTLVQREKLSLWLGISQKRWRQKDKDYSQLINRFKPYQEVVFFDRIY QAVLRYLIQFSLKLDEGEIYALMAFILSMDLLDYSNNERLLGFGGPIAKASQCFLNQVKN LTQKGQAVMREEVLYCFGQSSTKLYFFEGAILQKPLVADPKCLSMVKIVMETIFKRKFKK ANNITITISETLNTLVDYLNLPPCKEHKIGVLLLGDPIKNSIQRLQLQKTLEQPPYITFE TFDQKKWLDYDLVITNVNLPEKNSVQVYRLKNSSMTYDFTQLKLIFRNLLY >gi|308170505|gb|AEHR01000002.1| GENE 53 45108 - 46628 1492 506 aa, chain + ## HITS:1 COG:SP2186 KEGG:ns NR:ns ## COG: SP2186 COG0554 # Protein_GI_number: 15901993 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Streptococcus pneumoniae TIGR4 # 3 501 4 502 502 799 76.0 0 MGDNYILSIDQGTTSTRAVIYNHKGEQVGSYQKEFDQFFPKAGWVEHDANQIWNSVQSVI AGAFIESGLKPAQIKGIGITNQRETTVIWDKNTGKPIYHAIVWQSRQTAPIAERLIQQGY KDMIRDKTGLIIDPYFSATKIRWILDQVDGAQERAEKGELLFGTIDSWIVWKLTDGAAHI TDYTNASRTMLYNIKDLCWDNEILKLLNIPKAMLPEVKSNSEIYGYTKPFHFYGAKVPIA GMAGDQQAALFGQLALEPGTVKNTYGTGAFIVMNMGEDFQLSKNNLLTTIGYGIGGKVVY ALEGSIFVAGSAIQWLRDGMRLIEKASQSEKLAEDSTNDDEVYVVPAFTGLGAPYWNYNA RGSVFGITRGTTREDFVKATLQSLAYQTRDIINTMELDTGINIHLLKVDGGATMNNYLMQ FQSDILGIELDRAKNLETTALGAAFLAGLAVGFWEDIDELKTLEAVGQRFSPTMNNARKE QLYKGWQRAVKATQVFSKIEDDIVEE >gi|308170505|gb|AEHR01000002.1| GENE 54 46631 - 48472 2051 613 aa, chain + ## HITS:1 COG:SPy1683 KEGG:ns NR:ns ## COG: SPy1683 COG0578 # Protein_GI_number: 15675544 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 1 613 1 612 612 818 67.0 0 MKFNYQTREHAIEKLQDRTLDLLIIGGGITGAGVALQAAASGLETGLIEMQDFAEGTSSR STKLVHGGIRYLKNFDVEVVADTVGERAVVQQIAPHVPKPDPMLMPIYDEEGSTFSMFRL KVAMNLYDSLAGINSNSEFANTMLTKEEVLEHQPNLKQEGLLGGGQYLDFNNSDIRLVVE NIKRANQDGALIASRVKAVDYTFDDNGKVNGVVAEDLLNGKKFEINARYVINTTGPWSDK TRNLNKPEHPIEMMRPTKGVHLVIDRSKLEVSQPIYFDSGYNDGRMIFVIPREKKTYFGT TDTDYHGDFEHPTVTQADVDYLLKAVNNRFPKANITLDDIESSWAGLRPLIAGNAASDYN GGDNGKISDDSFNGLIDTVQSYLKKDKTRDDVEKAITNLQGSLSEKELSPSEVSRGSSLE QDDNGLITLAGGKITDYRKMAAGAMELIIKLLAENYDRHYQLINSKTYPVSGGEINPNDI ESAFDAYAQMGVTRGLEREDAYYLASFFGSNAPQVYAYVDKVPAVEGMSLAETVMLFYSL DNECVLTPNDYFLRRTNYMLFMRDKMDRLIDPVLNIMQEYFGWSDEEKQNHMDHLQKALY DNDLIALKEHKKA >gi|308170505|gb|AEHR01000002.1| GENE 55 48495 - 49199 890 234 aa, chain + ## HITS:1 COG:lin1574 KEGG:ns NR:ns ## COG: lin1574 COG0580 # Protein_GI_number: 16800642 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 9 232 16 239 272 245 57.0 6e-65 MNFWVNFFGTCLLVLLGDGIVANNCLAKSKGKDAGWLAITLGWGLAVMVGSYASGILGPA HLNPAVTIAFAVKGSLPWSSVLPYILAQLAGGFIGAILVWLAYYKHFEETTDSDTILGIF STEPAIRSYLHNFITEAIGTFVLVFAVMTFAKNNLAAGLNPLIVSGLIVSIGLSIGGPTG YAINPARDLAPRLAHSVLPISHKGRSDWAYAWVPIFGPIVGAILASLAYMALPL >gi|308170505|gb|AEHR01000002.1| GENE 56 49381 - 49698 302 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309809133|ref|ZP_07703006.1| ## NR: gi|309809133|ref|ZP_07703006.1| conserved domain protein [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners LEAF 2052A-d] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners LEAF 2052A-d] conserved domain protein [Lactobacillus iners UPII 60-B] # 1 105 1 105 105 140 100.0 3e-32 MLSPIMQGCLLCVYFIVIAYSKEIYRLLRKTSGGSVPLKSKILLFIGDLFSAIVVLIAVI HPISKMDNISSIMSSFSLAFVPVIFIVALIILIAIYLFTKRTNRI >gi|308170505|gb|AEHR01000002.1| GENE 57 49922 - 52111 2686 729 aa, chain + ## HITS:1 COG:SPy2110 KEGG:ns NR:ns ## COG: SPy2110 COG1328 # Protein_GI_number: 15675860 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pyogenes M1 GAS # 18 717 15 723 732 951 63.0 0 MLKQREAKIITSKVSIPLKATKRDGSVYDFALYKLRMVIDNLGLAKNEQVILSAILSQFA SKENVTTVEIASAFVRVLREMGFTQAAQQYIDYRKQDEANFVRQTGTTDRLHRLLEHDPT IVNENANKDSRVFSTQRDLTAGTVGKTIGLTLMPEHIAKAHLRGDIHWHDLDYTPLSPMT NCCLIDFKEMLSHGFTIGNAEIESPHSIQTATAHMSQIIANVASSQYGGCSADRVDEVLA PYARKNYQKHLDEAAEFFDDQEKIKAFAKKRTKKDIYDAMQALEYEINTLFSTQGQTPFT TLGFGLGTDWFEREIQKSILKIRIEGLGRTSRTAIFPKLVFTLKRGLNLNPTDPNYDIKQ LALECSTKRMYPDVLMYDTIVAITGSFKVPMGCRSFLQGWKDENGKEVNAGRMNLGVVTI NLPRIAMESKGDIDLFWSILKERLQTAHEALQIKADRCRQAKPDNAPILYENGAFGKRLP ADGDINDLFKNKRATISLGYIGLYEVGTVFYGSCWEHNAEAHQFTINIVKKLHDACMKWE AEDPNHYHYSVYSTPSESLTDRFCRLDTAKFGIVKDITDKEYYTNSFHYDVRKHPTPFEK IDFEAPYPHYAAGGFIHYCEYPNLRQNPKALEAVWDYAYDKVGYLGTNTPIDRCFKCNFA GEFEATAKGFQCPKCGNHDPESCDCVKRTCGYLGNPLKRPMVHGRHEEIVHRKKHMSYRM EEKLANDNK >gi|308170505|gb|AEHR01000002.1| GENE 58 52136 - 52849 566 237 aa, chain + ## HITS:1 COG:SP0205 KEGG:ns NR:ns ## COG: SP0205 COG0602 # Protein_GI_number: 15900141 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pneumoniae TIGR4 # 54 235 3 183 196 269 71.0 3e-72 MPERDKNKQDGPDIRSNLIKVNVGGDTLFVDSNQYRLKRRKAKYIDTKQRHPKNPKPQEW ISEKYSQHKIADYKPFNFVDGEGVRCSLYVSGCLFDCPGCYNLAAQNFNYGMPYTQELED KIIADIAQPYVQGLTLLGGEPFLNTWVCLKLINRMRKEFGHDKDIWSWSGYTWDELQLET DDKKEMLSKIDILVDGRFLDPLKDLTLQFRGSSNQRIIDVQKSFAAGHVVIWDKLVR >gi|308170505|gb|AEHR01000002.1| GENE 59 52952 - 53584 758 210 aa, chain + ## HITS:1 COG:BH3282 KEGG:ns NR:ns ## COG: BH3282 COG0477 # Protein_GI_number: 15615844 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 16 209 5 198 401 95 31.0 9e-20 MKTAHGTRPRDEINLVWLLLGELLDWIGASFIWPLTSVYLNKNLHVSLAIVGIVILCNCL ANMVGSVIAGWAYDRYNPYYLLIAGASIDATVLFCIALNHSWPIYWFWMTLTGFLAGWNG ALINSIATSIHSHPSRYVFNMLFFAQNLGVVLGTLFVGYLYDYSITMLFVIAALLFVGVS INAILNYRPSIQFHKERLAAKIHNQQKNQV >gi|308170505|gb|AEHR01000002.1| GENE 60 53590 - 54174 396 194 aa, chain + ## HITS:1 COG:BS_yttB KEGG:ns NR:ns ## COG: BS_yttB COG0477 # Protein_GI_number: 16080087 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 20 160 216 357 397 100 40.0 1e-21 MPMNNFKMTFGLFITIGIIWLMYMNWESNLSVYMVSLGIPFHLYSFLWTINAGIIVVIQI FMSRYPNIFKTLFHQIVFGISMFAISFITLIFAKDFFHFVLSMITLTLGEATAMPAIPAY INDLSPTSSKGKYQGLTLSTSSIGRALGPLFGGIVIDNWGYINFFIVAAIGIFLTLVLIG PLHKQLKKQFVLYK >gi|308170505|gb|AEHR01000002.1| GENE 61 54289 - 56238 2476 649 aa, chain + ## HITS:1 COG:L49741 KEGG:ns NR:ns ## COG: L49741 COG3590 # Protein_GI_number: 15673785 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Lactococcus lactis # 21 649 3 627 627 456 40.0 1e-127 MTNINIRGGIGNIIEPDTNARPQDNLYLAVNSEWLKKAEIPSDRSRTGSFDKIDENLEKQ LMKDFSEFAKASKELPEVKNFDKAVELYKIANNFEKRNADGAKPIQLDLKLLEGLRDLND FNLKAADLTKAAFTLPFNFSVQTDMKNTKVNALHFSGPGLFLPDTTVYKTDSAKQLLDVF EKQSVNLLHMAGIDETVAKKYVQDAISYDARLAEVVKSTEEWADYPAMYNPTDISDFEAK FSSFKIDQYLNELFPEKPNRIIVAEPRYLDNVEKLINNNLFDEIKGWLIVEFINDVACYL SQDFREAAFPFSQALSGQPELAAGEKQAYRIASGAFSEVVGVYYGQTYFGSEAKADVLDM IHNMIDVYEKRIAENEWLSQATKDKAITKLRALILKVGYPSKIKEYYNRLQIMTEKTGGT LYSNMSKISQASLQYELEQLYKPVDRTVWLMPGHLVNACYDPQRNDITFPAAILQKPFYS LEQSRSTNYGGIGVVIAHEISHAFDNNGAKFDEFGNMKNWWTEQDAIEFKKRTQAEIDLF DGIEYGPVTLNGKQIVSENVADQGGLTAAVEANKIEHGDMKELFENFARVWANKQYSESI KTQVAVDVHAPGPERANVQSQCQEEFYKAFDVKPEDGMWLDPEKRVVIW >gi|308170505|gb|AEHR01000002.1| GENE 62 56372 - 57682 1325 436 aa, chain - ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 1 436 1 437 441 394 45.0 1e-109 MAHELTFEELKDFQESFNNARNKVVARAAMKSGLLEASFNPELGDKLNHVFSIEVDTENV TNQQQSGRCWLFSTLNTLRHEFGVKHKVKNFTLSQAYNFFWDKIERANRFYDEIINSANQ PLEDRTVQEYLRFAGEDGGQWAMAASLVQKYGVVPSYAMPETYNTNHTAALAESLGRKER KDALVLRKLVQEGKLEEVEAKRKEFLNEVYRMTALAVGEPPKTFDLEYKDDDKKYHLDKN LTPVEFFKKYINFDFSDYVCLTNAPDHEYNKLYSLPFEDNVNGGIPITFLNVPMDVLRKA TIAQLKDNETVWFGNDVGKQKDNKTGYLDTDLYQLDQLFDVDTTMTKKERLETREGTVSH AMTITGVDLDGEAVRKWKVENSWGDKIATKGYFTMSDQWFEEFVYEVVVHKKYLTDEQKQ IAQSEPEPLKPWDSIA >gi|308170505|gb|AEHR01000002.1| GENE 63 57727 - 59178 901 483 aa, chain - ## HITS:1 COG:BS_ydbT KEGG:ns NR:ns ## COG: BS_ydbT COG3428 # Protein_GI_number: 16077527 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 20 366 28 382 493 67 22.0 8e-11 MKTRHTSPLPIFLYLLLCIVITPIFIWLYLKHAKFLHDLSYFKYIFLAPLTKLFMSIYYW LNFKYYIDNDKIIIQKGIFNISQRQFLIKNVRQSNQHTPIIFRIFKHTNLVVDTGVNSDE EGTLNFNCISLIECKRIKDLINLGGTNESKYSLKQFIKGDFIANQNERLLFKTNILDVML SSLTSINIVAYISIIAIVTSVIDNINLRHYLPNFIYTYIKNSTLFWSTATILAFCFLLIN QFIIYGNFKLLDDKDTFYSINGFIEHRTNSFKKIYIKTIAIRQNLIMQLLGIHTVETYSA SPAIPQDNNANRNTFLPFIKTTPMYENLHKFFPKFSFKNIALENNSALLKRLSIIFFVPF IILLIIAIAKQNLYIFIICGVILISYLIQIIHMIFTNIIISKNTIISRTGMLNKICLYTL ISDVEFFAIKQGPLQWLLNTYSITIVIRKSPVAFITIPFIPPIKKQELLDELKKDKTSKN ILI >gi|308170505|gb|AEHR01000002.1| GENE 64 59159 - 59632 419 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809141|ref|ZP_07703014.1| ## NR: gi|309809141|ref|ZP_07703014.1| conserved domain protein [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners SPIN 2503V10-D] # 1 157 60 216 216 246 100.0 3e-64 MKYQTSSKLIIIRAIYSIVMIAILAIIIGSQYLLKLSSEMHNIITYLAIVLIVFLLILML IYTPLEYKMLGIKINDSGVIIHRGLIVRKKIYIAWSKIYTVTKSNGPLELLTNTKSVSVV TLANEITIPAINKKQADEFIKCMNQAIKEHTNENTSY >gi|308170505|gb|AEHR01000002.1| GENE 65 59795 - 60256 700 153 aa, chain + ## HITS:1 COG:BMEI0508 KEGG:ns NR:ns ## COG: BMEI0508 COG0782 # Protein_GI_number: 17986791 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Brucella melitensis # 7 153 6 155 157 90 40.0 1e-18 MVYFQKMTPEGYKKIETEIAELKKDRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQS RLRFLNKQLQYAQIVQKNNDGVIDLGSQVEIQFEDEEEIEPYTIVGTLEADVIDNKISFD SPLGAALMHKKAGDLVKVNAPAGSYQVRIISVK >gi|308170505|gb|AEHR01000002.1| GENE 66 60349 - 61149 893 266 aa, chain - ## HITS:1 COG:SP1063 KEGG:ns NR:ns ## COG: SP1063 COG0842 # Protein_GI_number: 15900933 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 230 1 230 266 142 34.0 8e-34 MNPKQFRHQSLGLKSIKIVANNEWRAFKHNKGLLLSMLMEPLITYGLLVMALNENLSAVH YAGLTISYNKYALTGVLTFFMTTQMSQAMYRSTVDKEYGLLAIKFTNGVQPWHYITGMSF FPMIGLLFQSSILLILGGFTGGIYNIGLLLLSFLVLLISLEFWSALGIILSTRISSYEQR DVVMTLLFSPISYAAPTLYVFNSHSPFIIKVLSAINPLSYQLKAIRTVAFGIFNWIDILI AIVITLFMIVIAQFILKRMPLTLSER >gi|308170505|gb|AEHR01000002.1| GENE 67 61150 - 61851 232 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 202 1 212 245 94 29 3e-18 MIDVSNLTIGYKDTTVVKNLDFKLNKGEFIALIGANGAGKSTLINTLIGINTPLSGKISW ELKSTKKNMFNDVGFSPQSQLIDWYTNVLDNVIQGPLLAGYNLSTAQKYAKEALQLLDLY SLKDKAVDHISGGQQQRVQIAREIARKPKLYILDEPTTGLDVETSENLFKYLKKEVEKGA LVLTSSHDLTLLEDYATQVLFINDHVQKYFGSLNNFLNDSTSLREKYLKERGK >gi|308170505|gb|AEHR01000002.1| GENE 68 62388 - 62702 319 104 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809098|ref|ZP_07702971.1| ## NR: gi|309809098|ref|ZP_07702971.1| PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners SPIN 2503V10-D] PTS family porter [Lactobacillus iners ATCC 55195] PTS system, Lactose/Cellobiose specific IIB subunit [Lactobacillus iners SPIN 2503V10-D] PTS family porter [Lactobacillus iners ATCC 55195] # 1 104 1 104 104 139 100.0 7e-32 MNKKVTIACTTGLSASILVTKIKQLITDDAITIESTAASQIADIIKLQKTDLLLLAPQLA YLRDQVNELILQKSNNKILVRYISIDLYSQLNANQTLEQIKKIL >gi|308170505|gb|AEHR01000002.1| GENE 69 62816 - 63268 227 150 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0198 NR:ns ## KEGG: LGAS_0198 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 4 150 1 147 220 93 40.0 3e-18 MKTVNTPKSFQGNIVRYSVYLVIYLFLYACIYQVIHIARVNWLIDIPILIFVLLGLFFYT RRYNKEQRYFEKKTEITLASDYKLIVGATILLIAFRLLIAYFQFKKYVPFTRNQLFYLQH ENNDLFWLLIIYQGLFLSVMQQFFRDWLFL >gi|308170505|gb|AEHR01000002.1| GENE 70 63744 - 64763 1430 339 aa, chain + ## HITS:1 COG:SP2229 KEGG:ns NR:ns ## COG: SP2229 COG0180 # Protein_GI_number: 15902033 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 2 337 3 341 341 450 64.0 1e-126 MKKVLLTGDRPTGKLHIGHYIGSLKNRVKLQNSGEYAPYIMIADTQALTDNARNPEKIKN SLIQVALDYLAVGLDPEKSTIFVQSQIPALFELTAYFMDLVTVARLQRNPTVKNEIKQKG FNDSLPIGFLNYPVSQAADITAFKASIIPVGDDQEPMLEQTREIVRTFNSVYGKEILVEP KGYFPPKGHGRLPGIDGNAKMSKSLNNAIYLSDDSETVKKKVMSMYTDPDHIHVQDPGKV EGNTVFTYLDVFDPDKDKVASLKEQYQKGGLGDVKLKQYLYQVIEAELMPIRERRANFAQ NTAEVYEMLQEGSRKANVVANQTLAEVREAIGLNYFDHK >gi|308170505|gb|AEHR01000002.1| GENE 71 64785 - 65258 501 157 aa, chain + ## HITS:1 COG:SPy1823 KEGG:ns NR:ns ## COG: SPy1823 COG2131 # Protein_GI_number: 15675651 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Streptococcus pyogenes M1 GAS # 4 136 3 135 153 187 62.0 8e-48 MVRDRISWQQYFMMQALVISQRSTCDRALVGSVLVKDKRMIATGYNGSVTGEPHCDDEGH LMVDGHCVRTIHSEMNALIQCAKNGISTEGCAIYVTHFPCFNCTKALVQAGIVEVNYYYD YRDNPLVMALLSDKHIKVQKINIDRKYLHNLEKSLEI >gi|308170505|gb|AEHR01000002.1| GENE 72 65255 - 65824 300 189 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0203 NR:ns ## KEGG: LGAS_0203 # Name: not_defined # Def: beta-propeller domain-containing protein # Organism: L.gasseri # Pathway: not_defined # 1 177 1 183 195 84 33.0 3e-15 MKTRVLLFVFVLWISLCFTSVSAVASGPIKVSDKLIERINHKNKCYAKTPLKIRLTLISM PSQHSEQVQKVKNNQVLILLMDNDLRIKVGSKMQKILSVSKCNAIILYVSKYLRSNDKIK QNQGLEKAVNAIYTIIDQEYNLPFDSSDLTSKEMDKILHPQRNNLIWTVVVVVIFSFIIT YTQRRRFSL >gi|308170505|gb|AEHR01000002.1| GENE 73 66156 - 68843 2378 895 aa, chain + ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 32 888 41 903 910 806 50.0 0 MLKINTSPKNQTNDTSLVKKIAREDKVATLYRMQTTLNGLTQEEASKRLAKNGPNEIAVD KHNNKLHFLFEAFLTPFTIVLLILATMSLFTNYIFVAPIDKDLSTVIIMLTMVFISGITS FVQNVKTNDAVEALLNMVSVTTNIRRSNQDREYPTKEVVVGDIINVAAGDMVPADMRLLR SKDLFCSSSSLNGESRPVEKIANIKPTDAQIDEYLDYPNILYEGTTIVSGSGMGVVFATG DNTVFGRVAQSISKNNIKETTFDVGIKHISELLLTMTAVIAPLVFLINGLTKGDWLSALI FAIATAVGLTPEMLPVIVTSNLVKGSVEMSKHGTIVKKMNSIQNFGSADILCTDKTGTLT QDKVVLERHYNLALKEKKHVLELSYLNSYYQTGMKNLIDKAIIEAAGDELDINDLQHRYN KIDEIPFDFKRRRMSVVVANDNNEHILVTKGAAEEMISCSTKMEVDGQVKPLTDQRKKQI LADIAEMNDDGLRVVLLGYKMNPAPVGEFSVDDESELTLIGFLAFLDPPKESAKAVIENL KHDGITIKILTGDNAAVTRNVGLQVGLNVDTIYTDSDFVGKTHEEMKKMVEECDIFVKLS PESKARIIQLLKENGHTVGYMGDGINDAPAMKSADVSISVDTAVDIAKKSADIILLHKDL LILENGVRIGRQIFGNTMKYIKITLSSNFGNILSILVASSFLPFLPMLPLQLLILDLLYG TSCLSIPFDTMDKQYLDVPRKWSTRKLPKFMFYFGPVSSIFDIITFALLFFVICPTVAGG QYSQLAASQKTIFATVFTAGWFIESLWTQEIVIHALRDPKIPFLQQRPSVIVALSTILTS IFGTVLPFVPSIAKMMKFGELPGYYIILVFILLVMYILLTTIIKKQYLKSEQFLI >gi|308170505|gb|AEHR01000002.1| GENE 74 68958 - 70937 2303 659 aa, chain + ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 538 4 542 549 729 65.0 0 MAEKKTFYITTPIYYPSGKLTIGNAYTTVAADAMARYKRNEGFDTFFLTGTDEHGLKIEQ KAEAQGIKPQEFVDNMALSYKKLWKLLDISYDKFIRTTDQEHVLAVQKIFERLLKQGDIY LGEYQGWYSVEDEEYFTESQLAEVYKDDSGKVIGGKAPSGHEVKLIKEPSYFFRMSKYAD RLLEYYKENPQFILPNSREKEMINNFIKPGLEDLSVTRTTVDWGIPVPSDPKHVVYVWID ALSNYISALGYSSEDDSLFKKYWPADVHLVGKEIVRFHTIYWPIMLMALDLPLPKQIFGH GWVLMKDGKMSKSKGNAVYPEMIVNRYGLDALRYYLMRAIPFGSDGIFTPEDFVERVNFD LANDLGNLLNRTISMINQYQDGLVDPASTTEDEYGKQLKELANNTINLYHEQMDALHFSK ALDTIWGLISRANKYIDETTPWVLNKEGKVDKLKCVMSNLAESLRLIALLIRPIMTQSPV HIFEQLGLSLDDANATSLCWGAYGWQNYVTKNPKPIFPRLNNEEEIKYIKQEMAKAKPKK STRSEQKQTNSEITIDDFAKVQLQVAEILAVAQVKGSNKLLAFTLDLGEKEPRQILSGIA AFYPKPQELVGKKVLAVTNLKPRKMLGQLSQGMLLSSEKNGVVKLVIVSNEHENGALLG >gi|308170505|gb|AEHR01000002.1| GENE 75 70937 - 71710 801 257 aa, chain + ## HITS:1 COG:L87336 KEGG:ns NR:ns ## COG: L87336 COG0084 # Protein_GI_number: 15672669 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Lactococcus lactis # 1 257 1 257 257 238 44.0 6e-63 MELFDSHMHLNDEPFRGKEEYYLKRAKQLNVVSGVVAGQDADFNRRAIELAERFSNLYAT VGYCPDVATKVDAKAYDVLIKELTKDKVVALGEIGLDYYWDESPRSVQRDVFAQQLDLAY QIKKPVNIHTRDAFEDTYDILSQSKVGEYGGIIHNFNGDPDYLKKILDLGMYVSFSGVVS FTNAVDVHASAKAVPLDRFLIETDAPYLTPKPYRGRQNETGYVYYVAQAIADIKNISLEE VALHTFNNAMRIYGITK >gi|308170505|gb|AEHR01000002.1| GENE 76 71813 - 72256 432 147 aa, chain + ## HITS:1 COG:SPy0261 KEGG:ns NR:ns ## COG: SPy0261 COG1658 # Protein_GI_number: 15674441 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Streptococcus pyogenes M1 GAS # 1 144 38 185 189 114 43.0 7e-26 MSQQTITTIVNIAKKRDVIIFTDPDFNGERIRKIILKAVPTAKQAFITRKEGEPTKRGNS LGVEHASKAALQRALSDLHEVDIKANAISIQQYDELGLGMGDNARKLREKVGIALGVGYG NAKQFYKRLAMFGISYNKLKEVVKHVK >gi|308170505|gb|AEHR01000002.1| GENE 77 72246 - 73133 978 295 aa, chain + ## HITS:1 COG:lin0227 KEGG:ns NR:ns ## COG: lin0227 COG0030 # Protein_GI_number: 16799304 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Listeria innocua # 7 288 5 285 295 205 45.0 9e-53 MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPG IGSLTEQLLLAGAKVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATD IADYFDVNQPIIVVANLPYYITTPIILKLMHSPIKISQLTLMMQKEVAERISAAHKSKAY GPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAF SQRRKTLNNNLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR >gi|308170505|gb|AEHR01000002.1| GENE 78 73211 - 73453 265 80 aa, chain + ## HITS:1 COG:SA0452 KEGG:ns NR:ns ## COG: SA0452 COG4466 # Protein_GI_number: 15926171 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 77 1 77 87 96 53.0 1e-20 MPMSLMAIKEKLDNHLGQELIVIAQAGRKKVIRRKGVLKKTYPAVFVVDLDQQQNNFERV SYSYTDLLTKNIELDFDVIS >gi|308170505|gb|AEHR01000002.1| GENE 79 73877 - 74452 496 191 aa, chain + ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 171 98 268 272 187 53.0 9e-48 MPGNFIYLSDVLGDPQELRHVGELIATKYAYSNVDYVMTIETKGIAIANSVSRLLNVPYV LVRRRPKITEGATVSVNYVASSSDRVEKMELAKRSLPEGSNVLIVDDFMKGGGTLNGMEE LTKEFKCHVVGMCVLCEASNPVNKVVDDYQTLVKITEVDRSKGIIKAKPGNLLEQIDFQN KIKIPKLKGNV >gi|308170505|gb|AEHR01000002.1| GENE 80 74452 - 75837 1505 461 aa, chain + ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 3 448 4 449 457 500 57.0 1e-141 MNKYVVILAAGKGTRMKSKLYKVLHQVCGKSMVEHVVDAAQGTNPDKIVTVVGNGASDVK SVLAGKSEFAFQKEQLGTGHAVLATADLLKNLSGYTIVTTGDTPLFTAATFNELFEQHIQ HKNSATVLTAIVKDPFGYGRIIRDAAGNVLRIVEQKDCSASESAINEINTGVFCFDNKEL FSALQKVTNHNAQKEYYLTDVLEIMREKGLVVGACQMADYTESLGVNDRIALAEATKLMQ RRINEQHMKNGVTLIDPANTYIDCDVQIGSDTIIEPNVVIKGHTIIGNECYIASGSRLVN ARIGNNVTITSSTIVDSTMHDRSDIGPNSHLRPKSEIMSGAHIGNFVEVKKATIGENTKL GHLTYVGDATLGKDINVGCGTIFSNYDGVEKLHTNVGDHTFIGAGSTLIAPVNIADHAFI AADSTITKDVAKYDMAIARGRQVNKEGYWHKLPLAKNKAWD >gi|308170505|gb|AEHR01000002.1| GENE 81 75931 - 76896 952 321 aa, chain + ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 5 315 7 316 317 417 66.0 1e-116 MSQLDNEIKIFALNSNKPLAKSIADTVGVELGKSDVKRFSDGEIQINIDESVRGKDVFLV QSTSAPVNDNLMELLIMIDAVKRASAKTINLVMPYYGYARQDRKTRAREPITAKLVADML QAAGATRILSLDLHAPQIQGFFDIPVDNLMGAPLLADYFLSHGLEKDAVVVSPDHGGVTR ARKLAEFLKTSIAIVDKRRPKANVAEVMNIIGDVKGKRAIIIDDMIDTAGTITLASQALI DAGATEVYASATHAVLSGPAIQRLNDSPIKKLILTDSINQPEEKQLSKAELVSVGPLMGR AIKFIIDNQPVSPLFDTRFQK >gi|308170505|gb|AEHR01000002.1| GENE 82 77140 - 77448 494 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518428|ref|NP_964358.1| 30S ribosomal protein S10 [Lactobacillus johnsonii NCC 533] # 1 102 1 102 102 194 96 1e-48 MASQQIRIRLKSYEHSILDESAAKIVATAQRTGAEISGPVPLPTERTLFTVLRSPHKNKD SREQFEIRTHKRLIDIVNPTPKTVDSLMKLDLPSGVDIEIKL >gi|308170505|gb|AEHR01000002.1| GENE 83 77476 - 78105 1014 209 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518429|ref|NP_964359.1| 50S ribosomal protein L3 [Lactobacillus johnsonii NCC 533] # 1 209 1 209 209 395 93 1e-109 MTKGILGRKVGMTQVFSKNGILVPVTVIEATPNVVLQVKTNESDGYEAVQVGYQDVREVL SNKPAKGHAAKAKTAPKRFIREIRDVELEGYEVGSEIKVDTFSEGDVVDVTGTSKGHGTQ GNIKRWGQSRGPETHGSRYHRIPGSMGSIINRVPKGKKLPGHMGGKQVTVQNLVIEKVVP EKNVLLIKGNVPGAKNSLIIVKSAVKAAK >gi|308170505|gb|AEHR01000002.1| GENE 84 78120 - 78734 551 204 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167755913|ref|ZP_02428040.1| hypothetical protein CLORAM_01433 [Clostridium ramosum DSM 1402] # 1 203 2 206 207 216 50 3e-55 MAIKVIDQKGKSVGEVDLNKCIFEVEPNDSVVFEAIIRQRAGKRQGTHATKNRSAVSGGG KKPWKQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKVDMPRKARRLAIKSVLSQKVADG NLIVLDQLTLATPKTKDLKAIFSAIKVSGKVLVVSDDKNVQLSGKNLPQVKVVPVNGLNV VDAVDYEKLLLTQDAIKRIEEVLA >gi|308170505|gb|AEHR01000002.1| GENE 85 78734 - 79036 454 100 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116628965|ref|YP_814137.1| 50S ribosomal protein L23 [Lactobacillus gasseri ATCC 33323] # 1 96 1 96 98 179 93 5e-44 MDAHDIILRPVVTEKSMDLMDDKKYTFDVLVSATKTQVRNAVEEVFDVKVKNVNIMNVRG KDKRVGRYTGKTARRRKAIVTLTEDSNSIKIFNDNESKEK >gi|308170505|gb|AEHR01000002.1| GENE 86 79052 - 79888 1356 278 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227521625|ref|ZP_03951674.1| 50S ribosomal protein L2 [Lactobacillus gasseri JV-V03] # 1 278 1 278 278 526 92 1e-148 MAIIKYKPTTNGRRNMTTSDFAEITKKKPEKTLLESQSHKAGRNSYGHITVRHRGGGHKQ KYRIIDFKRNKDEVKAVVKAIEYDPNRTANIALVHYTDGVKSYILAPKGLTVGTVIESGK GSDIKPGNALPLADIPAGTEIHNIELKPGKGGQLVRSAGTSAQVLGQDGRYTLVRLQSGE VRKILSTCRATIGLVGNEQHSLIQLGKAGRSRWLGKRPQSRGSVMNPNDHPHGGGEGKAP VGRTQPMTPWGKKSRGIKTRNSKASSEKLIIRHRKGNK >gi|308170505|gb|AEHR01000002.1| GENE 87 79911 - 80195 438 94 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518433|ref|NP_964363.1| 30S ribosomal protein S19 [Lactobacillus johnsonii NCC 533] # 1 93 1 92 95 173 91 3e-42 MSRSIKKGPFADSHLIKKIEAQESSEKKQVIKTWSRRSTIFPSFVGYTIAVYDGRKHVPV YVTEDMVGHKLGEFVPTRTFRGHKSTADKATTTK >gi|308170505|gb|AEHR01000002.1| GENE 88 80214 - 80567 521 117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506878|ref|YP_001576832.1| 50S ribosomal protein L22 [Lactobacillus helveticus DPC 4571] # 1 117 1 117 117 205 91 8e-52 MAEQINSARSEARTVRIAPRKARLVVDLIRGKSVAEALAILEFTPRSASPIVKKVLKSAI ANAEHNYDLESANLYVSEAYVNEGPTLKRFRPRAKGSASPINKRTSHVVVKVSVKND >gi|308170505|gb|AEHR01000002.1| GENE 89 80582 - 81256 1025 224 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518435|ref|NP_964365.1| 30S ribosomal protein S3 [Lactobacillus johnsonii NCC 533] # 1 224 1 222 222 399 87 1e-110 MGQKINPNGFRLGINRDWEAKWYAGKDYANNLNEDLRIRKYIEQKLADASISNVEIERAA NRINLSIHTAKPGMVIGKGGKEVEELRTRLNTITGKNVHINIVEIKKPDLEAKLVGESVA KQLEARIAFRRATRKATQRSMHVGAKGIKVQTAGRLNGADMARREWHTEGSVPLHTLRAD IDYAWVEAATTYGQIGVKVWINRGEILPQRKNKPVASKKAKGGN >gi|308170505|gb|AEHR01000002.1| GENE 90 81259 - 81696 690 145 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116628970|ref|YP_814142.1| 50S ribosomal protein L16 [Lactobacillus gasseri ATCC 33323] # 1 144 1 144 145 270 93 2e-71 MLVPKRVKHRREFRGKMRGEAKGGKTIAFGEYGLQAVESSWITNRQIEAARIAMTRYMKR GGRVWIKIFPHKSYTAKGVGVRMGSGKGAPEGWVAVVKRSKIMFEIGGVSEDVAREALRL ASNKLPIKTKFVKKNVEVGGESNED >gi|308170505|gb|AEHR01000002.1| GENE 91 81674 - 81871 291 65 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116628971|ref|YP_814143.1| 50S ribosomal protein L29 [Lactobacillus gasseri ATCC 33323] # 1 63 1 63 69 116 93 4e-25 MANLMKTKDIRALTTDQMLEKEKQYKEELFNLRFQQATGQLENTARLKKVRKNIARIKTI LSENN >gi|308170505|gb|AEHR01000002.1| GENE 92 81894 - 82160 425 88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518438|ref|NP_964368.1| 30S ribosomal protein S17 [Lactobacillus johnsonii NCC 533] # 1 88 1 88 88 168 93 1e-40 MSETNERNRRHVYQGRVVSDKMDKTITVVVDTYKNHPVYKKRIKYSKKYYAHDEKNEAKI GDIVRIMETRPLSHAKRYRLITIVKKSI >gi|308170505|gb|AEHR01000002.1| GENE 93 82189 - 82557 585 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518439|ref|NP_964369.1| 50S ribosomal protein L14 [Lactobacillus johnsonii NCC 533] # 1 122 1 122 122 229 96 3e-59 MIQHESRLKVADNSGARELLVIKILGGSTRKTGNIGDIVVCAVKQATPGGVVKKGDVVKA VIVRTKSGARREDGSYIKFDENAAVIINADKSPRGTRIFGPVARELREHDFMKIVSLAPE VL >gi|308170505|gb|AEHR01000002.1| GENE 94 82578 - 82820 343 80 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518440|ref|NP_964370.1| 50S ribosomal protein L24 [Lactobacillus johnsonii NCC 533] # 1 78 1 76 79 136 88 4e-31 MFVKTGDKVKVIAGNDKGKEGIVLSVNAKTNRVVVKGIHKVKKHEKPSQTNANGGVVEKE GSIHVSNVKVIEKAKKEDKK >gi|308170505|gb|AEHR01000002.1| GENE 95 82835 - 83377 832 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518441|ref|NP_964371.1| 50S ribosomal protein L5 [Lactobacillus johnsonii NCC 533] # 1 180 1 180 180 325 90 7e-88 MANTLLEKYKKEIAPALKEKFNYSSTMQIPKIEKIVLNMGVGDAVSNAKNLDEAVEELTL ISGQKPLITKAKKSIANFRLREGMSIGAKVTLRGDRMYDFLYKLINVSLPRVRDFRGVSS RSFDGRGNYTLGVKEQLIFPEIDYDKVNRVRGLDVVIVTTAKSDEEAHELLAQFGMPFSK >gi|308170505|gb|AEHR01000002.1| GENE 96 83393 - 83578 332 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518442|ref|NP_964372.1| 30S ribosomal protein S14 [Lactobacillus johnsonii NCC 533] # 1 61 1 61 61 132 98 7e-30 MAKTSQIVRNHRPAKFSSREYTRCERCGRPHSVYRKFKLCRICLKDLAHKGQIPGLKKAS W >gi|308170505|gb|AEHR01000002.1| GENE 97 83605 - 84003 632 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116628976|ref|YP_814148.1| 30S ribosomal protein S8 [Lactobacillus gasseri ATCC 33323] # 1 132 1 132 132 248 93 1e-64 MVMTDPIADYLTRIRNANMAKHESVVIPASSMKKSLSEILKQEGFIRDYQVEEDNKQGLI TVFLKYGPNNERVISGLKRISKPGLRNYVSAENLPKVLNGLGIAIISTSAGIITDKEARE KNVGGEVIAYVW >gi|308170505|gb|AEHR01000002.1| GENE 98 84028 - 84558 824 176 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227888838|ref|ZP_04006643.1| 50S ribosomal protein L6 [Lactobacillus johnsonii ATCC 33200] # 1 176 1 176 176 322 90 6e-87 MSRIGLKVINVPESVTVTKNGDNITVKGPKGELTRYFDPRIIFEQKDGEITFSRSSESDK ALHGTSRANLAAMIEGVNTGYVKKLTLVGVGYRANAQGKKLTLNVGYSHPVEFEAPEGVT VTTPAATTIQIEGISKQVVGQFAAEIRDVRPPEPYKGKGIRYEDEYVRRKEGKTGK >gi|308170505|gb|AEHR01000002.1| GENE 99 84585 - 84944 535 119 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116628978|ref|YP_814150.1| 50S ribosomal protein L18 [Lactobacillus gasseri ATCC 33323] # 1 119 1 119 119 210 89 2e-53 MISKPDKNKLRAKRHRRIRGKISGTAERPRLSIFRSNKNIYAQLIDDVEGVTLASASTND KAITAEGSKIEQAAQVGKALAEAASKKNIKTVVFDRSGYLYHGRVAALAEAARENGLEF >gi|308170505|gb|AEHR01000002.1| GENE 100 84962 - 85474 790 170 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518446|ref|NP_964376.1| 30S ribosomal protein S5 [Lactobacillus johnsonii NCC 533] # 1 170 1 174 174 308 91 5e-83 MANHNDSRKDRKKDDIEDQLVAINRITKVVKGGRRMRFAAVVVVGDRKGHVGFGTGKAQE VPEAIRKAVEAGKKRMIEVPVVGTTIPHDVLGHFGSGSIMLKPAEAGSGVAAGGAVRIVM DLAGISDVTSKSLGSNTPINVIRATMDGLKKLKTREEVLKLRESAKSLED >gi|308170505|gb|AEHR01000002.1| GENE 101 85487 - 85672 269 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227525640|ref|ZP_03955689.1| 50S ribosomal protein L30 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 108 86 1e-22 MTELKVTLIRSAAHRLPNQRKVVKALGLGKVSSNVVLPDNAATRGALLKIAHLISVEEVS K >gi|308170505|gb|AEHR01000002.1| GENE 102 85703 - 86143 656 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116628981|ref|YP_814153.1| 50S ribosomal protein L15 [Lactobacillus gasseri ATCC 33323] # 1 146 1 146 146 257 87 2e-67 MKLNELKATEGSRRNRKRVGRGTSSGYGKTSGRGQKGQLARSGGKTRLGFEGGQMPLYRR MPKRGFNNINRKEYAIINLNDLNKFEAGSEVTIDSLKEAGIVKKELAGVKLLANGKLDVK LTVKVNKVSESAKKAVETAGGTVEVI >gi|308170505|gb|AEHR01000002.1| GENE 103 86143 - 87447 1432 434 aa, chain + ## HITS:1 COG:L0333 KEGG:ns NR:ns ## COG: L0333 COG0201 # Protein_GI_number: 15674060 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecY # Organism: Lactococcus lactis # 2 433 3 432 439 421 49.0 1e-117 MFTTLKNAFKDKEIRGKIYYTLFILLLYRIGANIAVPGINAKALAILANSSAKNLIPMLD TISGGGLDTFSIFALGVSPYITAQIVIQLLQMDIVPKLVEWGKQGEVGRRKTNQVTRYLA LVVAFIQSIGITLGFNVLTQMGLVRTQTVETYVQIAIIMTAGTMLLTWLGDEITDKGLGN GVSVLIFAGIIARLPHGLYKLFNDSIINTSSSDRINGILFFIGMLIIIFLVAKFVTWFQQ ADLRVPIQYTRRATLSGSESFLPLKINVSGVIPVIFASSFIVTPATILEAFRLNHGGDQW FQVCQEIFSLQTTYGALIYTFLIVLFTFFYAFVQVNPEKLSENLQKQGAYIPSVWPGKDT QKYVSQILMRISTVGAIFLGLVALLPQLATNMWNLPQSIGLGGTSLLIVIGVVLELSRQI DGLLMKREYVGFIR >gi|308170505|gb|AEHR01000002.1| GENE 104 87457 - 88107 882 216 aa, chain + ## HITS:1 COG:BH0155 KEGG:ns NR:ns ## COG: BH0155 COG0563 # Protein_GI_number: 15612718 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Bacillus halodurans # 2 215 1 213 217 242 58.0 4e-64 MINLILLGLPGAGKGTASERIVDEFHLAHISTGDMFREAIANETPVGLEAKSYIDNGNLV PDEVTAKLVEERLQQKDTEKGFILDGFPRTTVQAELLEDITKRLDKRLTNVISIDVSEDV LIKRLSARYMCKACGATYNKISNPTKVEGKCDRCGGSEFYQRDDDKPEVVKNRLEVNKKM NTPLKDFYDKKGILSSVNGEQTPDKVFKEIYDILKK >gi|308170505|gb|AEHR01000002.1| GENE 105 88153 - 88404 297 83 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 11 81 1 71 72 119 81 8e-26 MASCQFGGTILAKEDVIEVEGKVIDTLPNAMFKVELENGATILAHVSGKIRMHYIRILPG DRVTVELSPYDLTKGRITYRFIK >gi|308170505|gb|AEHR01000002.1| GENE 106 88419 - 88535 203 38 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116628985|ref|YP_814157.1| 50S ribosomal protein L36 [Lactobacillus gasseri ATCC 33323] # 1 38 1 38 38 82 97 6e-15 MKVRPSVKPMCEHCKIIKRNGRVMVICSANPKHKQRQG >gi|308170505|gb|AEHR01000002.1| GENE 107 88568 - 88918 531 116 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518453|ref|NP_964383.1| 30S ribosomal protein S13 [Lactobacillus johnsonii NCC 533] # 1 115 1 115 115 209 88 6e-53 MARIAGVDLPRDKRIVIALTYIYGIGEPTAKVICEAAGVSEDVRTSDLTPEQQEKLRSEV DKFRVEGDLRREVNLNIKRLVEIGSYRGIRHRRGLPVRGQNTKNNARTRKGSKGKR >gi|308170505|gb|AEHR01000002.1| GENE 108 88939 - 89328 635 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42518454|ref|NP_964384.1| 30S ribosomal protein S11 [Lactobacillus johnsonii NCC 533] # 1 129 1 129 129 249 97 5e-65 MAAKKTARKRRVKKHVESGVAHIHSTFNNTLVMITDVQGNAVAWSSAGALGFKGSRKSTP FAAQMAAEAATKTAMDQGMKHVEVSVKGPGAGREAAIRALQATGLEITAIRDVTPVPHNG SRPPKRRRV >gi|308170505|gb|AEHR01000002.1| GENE 109 89374 - 90312 1157 312 aa, chain + ## HITS:1 COG:BH0162 KEGG:ns NR:ns ## COG: BH0162 COG0202 # Protein_GI_number: 15612725 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus halodurans # 1 312 1 314 314 382 63.0 1e-106 MIEFEKPNITVIDQEESYGKFVVEPLERGFGTTLGNSLRRVLLTSISGTALSYIMIDGVL HEFSTIPGVREDVTKIILNLKKLELKLLVDEEKMVEIDVEGPAVVTAADLKVDADVEILN PDQYICTIAEGGHLHMSIAIKNGRGYIPASENKSDDMPIGVIPVDSLFSPIKKVNYQVEN ARVGKRDDYDKLTLELWTDGSITPNDALSFAAKILEEHFKVFMSADMSDQFANVMIEKED KSNEKKLEMTIEELDLSVRSYNCLKRAGINTVQELNNKSEADMMRVRNLGRKSLEEVKNK LTELGLSFSKED >gi|308170505|gb|AEHR01000002.1| GENE 110 90337 - 90720 570 127 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116628989|ref|YP_814161.1| 50S ribosomal protein L17 [Lactobacillus gasseri ATCC 33323] # 1 127 1 127 127 224 88 2e-57 MSYRKLGCDSAHRKAMLRALTTQLIMNERIETTETRGKEIRKTVEKMITLGKRGDLSARR QAAAYVRNEIADIHEEKDGLVVKTALQKLFSDVAPRYKDRNGGYTRMYKLAMPRKGDAAP MVIIELV >gi|308170505|gb|AEHR01000002.1| GENE 111 90904 - 91545 336 213 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 11 203 135 325 398 134 38 5e-37 MGYKIVDVNNISYQYYDSSQLALDHVSFTVDSGMWVSVVGPNGSGKSTLTKVLDGLLVPK SDKDSHIIIDGIKLSDNTLYNIRNKIGIVFQDPENQFVGATVADDVAFGLENRNIDRNQM IDIVTDSLKQVDMLRFADKAPNMLSGGQKQRVAIAGVLAIKPKIIILDEATSMLDPDGKN IILKLIKNYKSKIIILLFLLHMIWKKPYIQISY >gi|308170505|gb|AEHR01000002.1| GENE 112 91727 - 92578 847 283 aa, chain + ## HITS:1 COG:L76755 KEGG:ns NR:ns ## COG: L76755 COG1122 # Protein_GI_number: 15672260 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Lactococcus lactis # 3 260 2 259 288 263 49.0 2e-70 MAIKFEKVGYTYGRETAFSSLGLNDINTVIEKNTFNSVIGHTGSGKTTLLQALDGLIKIT TGTISLKNMVINVNSDEKKLFILRKHIGLVFQFSENQLFADTVLKDVMFGPINFGISVDK AKQLAEKWLRFVGIGSELFDKSPFDLSGGQMKRVAIAGVLAFEPDILCLDEPVSSLDPQG RKLIMQLFKKYQQDGHTVILVSHNMDEVYHYSDNIIVMENGTIIKQGSPRKIFEDKNWLD KHKLVRPSILKFIDDLEKVGFKVTKTNDLSNLLGEILQQIGVK >gi|308170505|gb|AEHR01000002.1| GENE 113 92579 - 93376 666 265 aa, chain + ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 252 2 253 266 236 47.0 3e-62 MNNILIGRYIPGTSLIHKMDPRGKLITSFLFVMIIFLANNWSTYAVLFVFALLAVCMTKI SFKIFWRGIRPLIWLILFTVIMQLLFTGSGKVLWHVGFLKVTDYGIISSIYMCIRLITII VVSTVFTLTTTSLQIADAIEWLIHPLKYLKVPVGEIALVLSIALRFVPTLMDEATKIINA QKARGSDISTGKFIEKIKKIVPILVPLFIRSLSIALDLAVAMEARGYRDGMPRSRYRQLA WHIIDILNLGSLAILIGLLLLLRRY >gi|308170505|gb|AEHR01000002.1| GENE 114 93377 - 94159 838 260 aa, chain + ## HITS:1 COG:lin2747 KEGG:ns NR:ns ## COG: lin2747 COG0101 # Protein_GI_number: 16801808 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Listeria innocua # 1 247 1 248 248 236 49.0 2e-62 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG QVIHFDYPGNVIPAKNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSR FTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLEQN GDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQQARNTAPASGLY LYHVFYDDLPKKYNLIAKRD >gi|308170505|gb|AEHR01000002.1| GENE 115 94261 - 94704 696 147 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238853451|ref|ZP_04643829.1| ribosomal protein L13 [Lactobacillus gasseri 202-4] # 1 147 1 147 147 272 89 4e-72 MRTTPLAKTSDIKRKWYVIDATDVALGRLSAAVATILRGKNKPQYTPNVDTGDNVIIINA AKLKLTGRKSTDKIYYHHSDYRGGLRATAAGELLANNPVRLVELSVKGMLPKNTLGHQEF LKMHVYAGEDHKHAAQKPETLDINKLI >gi|308170505|gb|AEHR01000002.1| GENE 116 94718 - 95113 644 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855101|ref|ZP_04645429.1| ribosomal protein S9 [Lactobacillus jensenii 269-3] # 1 131 1 131 131 252 95 4e-66 MAQQAAYAGTGRRKNSVARVRLVPGNGKITVNKEDVTEYIPYPNLVKDLKQPLALTETEG QYDVIVNVNGGGFSGQAGAIRHGIARALLEVDPDFRGSLKKAGLLTRDPRMKERKKPGLK KARKASQFSKR >gi|308170505|gb|AEHR01000002.1| GENE 117 95259 - 101132 170 1958 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167042352|gb|ABZ07080.1| putative ribosomal protein L31e [uncultured marine crenarchaeote HF4000_ANIW97M7] # 1823 1951 81 213 236 70 35 4e-11 MKKCHNTKLTSTIYLASLLAGGIYYNNAQVHVYASVENPKFDQPIKVDQYLEDIPFVQAP KVGWGSYKVDQTLDGKKIKLKINGQEHEFAKGITAHADACLIYDLSKIKSNIFETYLGID DTKTGEVEFRIYLDDELYYASGKVNRNNTQHILMNIAGKKQLKIIVDSLGYNGSDHSILA DPKFYFLDLKDKKIPDLANENPGFSYNKINDAPYNLNFEQYYFLKRMGKARLFSYMMTDK SNIKYLNWLFNNLSLLHSYNTASLPRGGNQIGFLKVFKELLDHDPDLKSDSEKQKIAMAV ALEYANGNINFWANSNLKSDPIKRYDIYSTLNNTPGALRPIFKTLSVELLRHVVNAEISD EDIIWIRDKIKRENPQLLFNNDELSNATYKYIAYNPFNKYGDDVQKGGFYGDNPTLEKVV ELGGVCGSVSKFDVVVLKSFGVPANVIGQPGHAAVTYMRDDGSWTRRNEIYSWGRSQGGT ATLLAGGSSGYNTTYNILASDILKDKDNYQQALKYYEFYKNVQPGLLKNSLAEKIITLVP CFVPVYRDQINELKDNRSATAKDYYELSKKILSTFKNYPKVMFDLLSPLKKGFAQDRYLL TDFAINYIQQVDSVTNSIARDVMKEDEYQKEYNSYNSVLGDFSFSGKNRYNLENVHPDTE YSFDGGITWHSSITNSPSLTSSEIAQLNTKYGILLRLKGMKKAIQIKLAKQVLPSFVRAD DQENIIVGLNHNMEYSLDNGQNWIDGNVVPDLSGKCTVLVREKAANKSFASDVKKLEFTN DNQIADDIMLGNMKVVQYSSQQNDTNQAAVNTINGTGTANNFWHTKWAGDSNRYITIGFN KEYTLKKFYYTPRLDNGENGNILKYEIYISNDGKQFTKVKAGEFTYSSPNYKSPKVVELP DGTKTKYFKLKIISAKGTGSYAAATKFAFEIPHEEAVAAYQEKQQKAKQQFNSELVEDLK NFKNNVESLSQLDQAKLCLGDLNLLKTDINKLDTKNINYIQELNKAKKRYDLLRDEIIIK NTIYQKQNDSKLLETFNKNNQQILTKSITDVTDKDINIITSALKQLKEKPEYSQIKTNNS EIILGLERKLLRAQDKKLANEFKQQFKTELELNEKNVSLNDYNNIVVAYYNLLALSSEVQ GDLNNEKTHLYDLLQFLEKNAVSMQNDIEFKKNNNEILSLSVDKITLKNLDKVTEQVNNA FYQYNFLNSFDKARLKASKEHLDALQSKILTFENIKAKENLLSQLQQFKNSFVNESDEIK HSWLQEYNFAKSVATRTVATNVYYQASAILLEKYEELSRTVYLQKDNIAKANKFKERFST LLNKDISKISIDDKKLLASANDQWRRQNAATLALLTDERAKLDAIEDKIESTQANYHTVI DDNINKLITQLKKDRNNSYSIYKTDIDNILQESELAKKEPDLIKQRELLLDIKKKRSSIL AKQANLKDKVTIIHNSLLPTLKISPNLVTPADRDQINSKLIYLNTLTPDIKASLGDEKLT LENLLNKINEIEQSPNKDKILKLIDQKVKAEHEIRAYSHLSYKEIQNYLKAIEKASDSTT VVAQLQSAQKLHNQRDASAKRELVTLKNKIKSILNDNNLSKMEPDNQAQIKKIKIDDVKL DGMTLGELSELFKYINNEISLLKSKDQSEKEFKQNKINYDEKIKDINQKISEINHKIVKL KECDVNYQKQLGDISNKVDFGLGLNEIDSTIKSLDKLSTNVDASLDKQAKAEKDKLILSI SAAKQKINSMNYLTNEEKADYLAKIDLAVSDDIVNKIVSDAVNKNHEKSISVKPVTPVKP KTPSEPETPVTPVKPKTPSVPEVSVKPEKPKTPSEPEVSVTPEKPKTPSEPEASVTPEKP KMPSVPEVPVTPEKPKMPSVPEVPVKPETPKIPSKPEVPVKPNTPSEPEVSVKPVKPNTT SVPEVSVKPKTPSEPEVSVKPVKPNTTSEPEVFSETSE Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:25:36 2011 Seq name: gi|308170475|gb|AEHR01000003.1| Lactobacillus iners SPIN 2503V10-D contig00012, whole genome shotgun sequence Length of sequence - 30020 bp Number of predicted genes - 29, with homology - 29 Number of transcription units - 10, operones - 6 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 41 - 391 352 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 2 1 Op 2 . - CDS 391 - 789 245 ## LDBND_0594 protein CrcB-like protein 1 3 1 Op 3 . - CDS 805 - 2328 1269 ## LCRIS_01774 hypothetical protein - Prom 2352 - 2411 6.6 - Term 2368 - 2421 13.5 4 2 Op 1 5/0.000 - CDS 2435 - 4246 2361 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Prom 4312 - 4371 5.7 5 2 Op 2 . - CDS 4437 - 5789 1708 ## COG1109 Phosphomannomutase 6 2 Op 3 . - CDS 5813 - 6175 298 ## LGAS_1287 hypothetical protein 7 2 Op 4 7/0.000 - CDS 6166 - 6780 476 ## COG4856 Uncharacterized protein conserved in bacteria 8 2 Op 5 . - CDS 6777 - 7619 950 ## COG1624 Uncharacterized conserved protein 9 2 Op 6 25/0.000 - CDS 7658 - 8731 1054 ## COG0687 Spermidine/putrescine-binding periplasmic protein 10 2 Op 7 36/0.000 - CDS 8728 - 9528 802 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 11 2 Op 8 30/0.000 - CDS 9525 - 10337 706 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 12 2 Op 9 3/0.000 - CDS 10324 - 11430 1347 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components - Term 11441 - 11481 2.4 13 2 Op 10 . - CDS 11485 - 12399 1082 ## COG0812 UDP-N-acetylmuramate dehydrogenase - Prom 12423 - 12482 6.7 + Prom 12424 - 12483 6.4 14 3 Tu 1 . + CDS 12513 - 13046 473 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 13087 - 13126 -0.1 - Term 13075 - 13114 1.3 15 4 Op 1 . - CDS 13125 - 13601 458 ## COG0802 Predicted ATPase or kinase 16 4 Op 2 . - CDS 13598 - 14578 1070 ## COG0280 Phosphotransacetylase 17 4 Op 3 . - CDS 14635 - 15330 827 ## COG0692 Uracil DNA glycosylase - Prom 15372 - 15431 6.8 + Prom 15308 - 15367 7.4 18 5 Op 1 . + CDS 15418 - 16281 939 ## COG0561 Predicted hydrolases of the HAD superfamily 19 5 Op 2 . + CDS 16281 - 16796 417 ## LGAS_1299 hypothetical protein - Term 16679 - 16737 -0.4 20 6 Tu 1 . - CDS 16803 - 17027 272 ## gi|309803906|ref|ZP_07697990.1| hypothetical protein HMPREF9214_0166 - Prom 17153 - 17212 3.7 - Term 17484 - 17528 7.2 21 7 Op 1 . - CDS 17533 - 18822 1644 ## COG1653 ABC-type sugar transport system, periplasmic component 22 7 Op 2 . - CDS 18861 - 20150 1557 ## LGAS_1639 metallo-beta-lactamase superfamily hydrolase 23 7 Op 3 38/0.000 - CDS 20134 - 20952 865 ## COG0395 ABC-type sugar transport system, permease component 24 7 Op 4 10/0.000 - CDS 20954 - 21817 599 ## COG1175 ABC-type sugar transport systems, permease components 25 7 Op 5 . - CDS 21817 - 22911 1362 ## COG3839 ABC-type sugar transport systems, ATPase components - Prom 22942 - 23001 9.8 + Prom 22955 - 23014 8.6 26 8 Tu 1 . + CDS 23074 - 24063 1039 ## COG1087 UDP-glucose 4-epimerase + Term 24069 - 24109 7.1 - Term 24048 - 24106 11.0 27 9 Op 1 . - CDS 24120 - 25319 1275 ## COG0282 Acetate kinase - Prom 25364 - 25423 7.3 - Term 25410 - 25470 8.2 28 9 Op 2 . - CDS 25485 - 28079 2898 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 28250 - 28309 9.1 + Prom 28252 - 28311 8.9 29 10 Tu 1 . + CDS 28409 - 29782 1237 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 29799 - 29840 4.3 Predicted protein(s) >gi|308170475|gb|AEHR01000003.1| GENE 1 41 - 391 352 116 aa, chain - ## HITS:1 COG:SP1294 KEGG:ns NR:ns ## COG: SP1294 COG0239 # Protein_GI_number: 15901154 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Streptococcus pneumoniae TIGR4 # 13 114 13 109 109 62 47.0 2e-10 MAWLMVLIGGICGALVRYKINIYTSNFYLGTFPLATLCVNLAGSFLMGILFAKVCAGYSY ALLGTGFLGGLTTFSTMNFELLDALRNKQYLIFISYFVLTYLGGFTLLLIGYILAK >gi|308170475|gb|AEHR01000003.1| GENE 2 391 - 789 245 132 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0594 NR:ns ## KEGG: LDBND_0594 # Name: crcB1 # Def: protein CrcB-like protein 1 # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 10 118 3 113 128 65 36.0 1e-09 MVKKIIQVKSLKIYLVIAILAAIGSILRSCLAKEINGVLLVNILGCIALGFINLFLKDYN YSNLSLAKGLTVGFIGSFTTFSSYNLEIFKLINHKQYLAGLTYFILFAGLGLFFTWIGML LEKLVVKVGKNR >gi|308170475|gb|AEHR01000003.1| GENE 3 805 - 2328 1269 507 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01774 NR:ns ## KEGG: LCRIS_01774 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 19 500 12 494 502 286 36.0 1e-75 MLQENSKKNQFFIRLLQCFILIQPLLDTYFFYANSKLKKLFVFSIPTLLRFGLIALIVFL FWKFSISESRSRYFKYICVYALILVFYSVGHLWYFSTFPAISKVMIIKEAFYIVRMLLPV IMIYIIYHTEFSIQQFMVVIQGLVALISGSIVISNLICKSMCSYDNHKLIVANIFSWFSR SDFTFREIASKGWFYFANTISAILVLLVPLIIYLLLTRFNFINSILYIFTGMAMIMLGTR VGTLGFVAINILSILVYLVHIFILRNAKFSIKPLILIAIFVGAYCATIPYSPMSRRNQST ETVAKKSTKHHTKRLIKKLDKALSQKETKAEKKEYIIAFVKKYHNRFNIPKKYIKYSIPV ENNYQFWNKVYHWPSIKRMDNRLLEETMVKEYMSQKSVGLVKIFGISYLAMTQLFHLERD FVSQKDSMGFIGMILLVGIYPIMIVYSIYKWLRYSQLRTMLNSFLIMANGLLILVAYNSG NVMDFLTASLIASFTFGFMLLQQKKVK >gi|308170475|gb|AEHR01000003.1| GENE 4 2435 - 4246 2361 603 aa, chain - ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 603 1 602 602 688 58.0 0 MCGIVGIIGKSARDVVLNGLKKLEYRGYDSAGIYLNDLNGHEYLTKAVGRIKNLEDKLSD NEQGLVGIGHTRWATHGKPSIANSHPHYSSDKRFYLVHNGVIENYAELKEKYLSDVSFNS DTDTEVVVQLIAKIAKEKCLSGFLAFKEALKLINGSYAFLLVDNKEPDHIFIAKNKSPMM LGIGDGFNIIASDAISVLDQTKLFIDLQDGDVADVTASAINIEDIAGNHIERKPYLVNID PNSASKGTYEFYMLKEIDEQPSVMRRLSKEYFNDDADVKVDANIVQSVAQSDRIYILAAG TSYHAGLVGKNIIEKYTDIPVEVGIASEFGYHFPKLSKKPFFIFLSQSGETADSRVVLKQ VNQLGLPSLTITNVAGSTLSREATYTMLLKAGPEIAVASTKAYTAQVAVQAILAKAVGEY LKIAAAIDFDLKRQLALVAEGMQEIVDGKDKINSLAKKYLATTRNAFYIGRGVDYAVALE GALKLKEVSYIQTEGFAAAELKHGTIALIEKGVPVVTLINDPATADLTRGNIQEVESRGA NVITIVAKKFAKATDDIILPDVDYYLSPLVTVVPAQLLAYYASKNKGLDVDKPRNLAKSV TVE >gi|308170475|gb|AEHR01000003.1| GENE 5 4437 - 5789 1708 450 aa, chain - ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 1 450 1 447 448 528 60.0 1e-149 MLKYFGTDGVRGVANAGLTPEMAFKLGRDGGYILTKHKSAGERARVLVSRDTRISGQMLE YALISGLLSVGIEVLELGVITTPGLSYLVRAQGADAGVQISASHNPVEDNGIKFFGSDGL KLSDEKEAEIEALIDSKEDTLPRPSAQGLGTVTSYHEGSSKYLQFIENTLPEQLDGIKVV VDGANGASSALISRLFADMGVDFTTIATHPDGLNINDHVGATHTELLQQEVVKQGAQLGL AFDGDADRCIAVDEKGNEVDGDHIMYVIGCYLADHGRLKNDTIVTTVMSNLGFTKALERR GIKNIRTQVGDRYVSEEMRASGYNLGGEQSGHVIISDYHNTGDGMLTGLHLLYVMKDTGK SLSELLSDFKSYPQKLVNVPVRNKQDWKKSTKISAAIAEVEKTLGDDGRIFVRPSGTQEL IRVMTEAPTQELADKCCQDVVDVVKAEMGI >gi|308170475|gb|AEHR01000003.1| GENE 6 5813 - 6175 298 120 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1287 NR:ns ## KEGG: LGAS_1287 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 119 203 321 322 106 51.0 3e-22 MLVAVDASGKQLNVVIQPETTHVYIPIRKSKKRVRLNITSHNAASNRMYSLTSSIKKVTL YGAASTLKDIVQLDVDVNLAGIVHNTSKKVRLKLPKGVVKADPSDIWVKIEMADISAIKN >gi|308170475|gb|AEHR01000003.1| GENE 7 6166 - 6780 476 204 aa, chain - ## HITS:1 COG:BS_ybbR KEGG:ns NR:ns ## COG: BS_ybbR COG4856 # Protein_GI_number: 16077244 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 190 1 192 483 89 32.0 4e-18 MNKFFDSKLFYKLLALIITILLTVYVSYNQVGFIPRGQRTRTLQTVTKTETLKLPLQISV NTDKYYVTGYPEKVKVNITGPSALVVSAINTKNFRAFIDLSELKIGKHQVPIRVSGLSNQ LSYKISPKKIVVDIQERKTRTLPIKIRYNSDVLSKEYFVYAPYCKPSMVEVTGEKSEVNH ISKIIANVDIRKKQSILLIVRLCW >gi|308170475|gb|AEHR01000003.1| GENE 8 6777 - 7619 950 280 aa, chain - ## HITS:1 COG:lin2225 KEGG:ns NR:ns ## COG: lin2225 COG1624 # Protein_GI_number: 16801290 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 278 2 272 273 283 53.0 2e-76 MVWDIYHIFTWQHLMNLIDILIVWFLIYRLIMIIKGTKAVQLAKGIALIIVIRLVAGFLH VVILSYLVDQILSWSVIGMIIIFQPEIRRGLEHLGRSPLLGGNVVAKKSSEIMIEELDKA IQYMSKRRIGALITLQQKTGLEDYIETGIPINATITGALLINIFIPNTPLHDGAVIIKDN KVSVAAAYLPLSDNNTIPKNLGTRHRAAVGISEVTDAITIVVSEETGGVTITRNSNLMLD LTREEYLKYLRAQLVPETDDQPTNFQRMISKIWNWGSSIR >gi|308170475|gb|AEHR01000003.1| GENE 9 7658 - 8731 1054 357 aa, chain - ## HITS:1 COG:SP1386 KEGG:ns NR:ns ## COG: SP1386 COG0687 # Protein_GI_number: 15901240 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Streptococcus pneumoniae TIGR4 # 1 355 1 354 356 397 56.0 1e-110 MKKLVLAAITIILVCLGLQILADKLNNSGVSSGSKDLIIYNWGDYIDPKLLKKFEKQTGY HVIYETFDSNESMYTKIKQGGTAYDICIPSDYMVSKMKESHLLKKINLRKISNIKNIDPQ FMNQSFDYGNNYSIPYFWGTLGIIYNDKFVKMGEIKHWNDLWKSKFKHQILLVDSARDIM GLSLISMKNSVNSQDSLKLKLAKTKLDALGANVKAIIADELKMYMIRNEASIGVTWSGEA RTMLNENPHLHYVVPSEGSNLWLDNIVIPKTAKNQAGAYAFINFMLDPKNAAQNAKYIGY ATPNMLAKKLLPDSIKKDRQFYPATSTMKHLQVFKNLRSEKIQEYNDLFLEFKMYAH >gi|308170475|gb|AEHR01000003.1| GENE 10 8728 - 9528 802 266 aa, chain - ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 1 264 1 264 268 279 61.0 4e-75 MKKFKWDKFYLTFILLTLYIPIFYLIIYSFSSGNNMDNFKNFTFDHYWDLINDNRLLAIF IETIILALLSSLFATIVGTLGAIAINNIKNRNRKKLLLTLNNVLMVSPDVIIGASFLILF TAMGISLGMGSVLLSHIAFSIPIVVLMVLPRLKEFDKSLVDAASDLGANSWQIFSKILLP AITPGILSGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGINLEINALSTVMFI FVLILVFIYYLITCKKGHTKGRAGTL >gi|308170475|gb|AEHR01000003.1| GENE 11 9525 - 10337 706 270 aa, chain - ## HITS:1 COG:SPy1103 KEGG:ns NR:ns ## COG: SPy1103 COG1176 # Protein_GI_number: 15675086 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Streptococcus pyogenes M1 GAS # 1 263 1 264 264 283 60.0 2e-76 MKKNKLLFLIPYSLWIILFVIAPLVMITLNAFSSKYGLTINNFKQFFINGTFLRMTLNSF WYAFLITFITLLLSYPTAYILSRMKNQQFWLLLIILPTWINLLLKAYAFIGIFGKHGLLN NFLGLVGISPVNILFTNFAFVVVAAYIEIPFMVLPIYNAICDIDPAVVKAAKDLGASNFQ TFIRILWPLSKSGVEAGVQAVFIPSLSLFMLTRLIGGNRVITLGTAIEEYFMSTMNWPMG STIGVILIILMIAVMISTSSDSKKKKEVKL >gi|308170475|gb|AEHR01000003.1| GENE 12 10324 - 11430 1347 368 aa, chain - ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 4 360 5 361 364 454 63.0 1e-127 MSNIIRLEHVRKEYDDGFVALDDVNLSIESGKFYSLVGPSGSGKTTILRIIAGFSEVSAG KVFFDNQDITHLDAAKRQINTVFQNYALFPHMNVFENVAFGLKIKKKEKSEIIRSVKAAL HMVQLDDFVNREISELSGGQQQRVAIARALVNKPQVLLLDESLSALDKRLRKDMQFELRE IQKKLGITFIFVTHDQEEALAMSDEIFVLNQGTIQQSGTPVDIYDEPVNDFVARFIGDSN ILNGRMIEDYLVEFNNRRFECADAGIKPGEKVEVVLRPEDLDIVEVADGKLSATVESQLF LGDHFEIKATDTDNNEWLIHSTNASKIGKEIGLYFDPEDIHVMRFGESEAEFDKRLESYE GEDDDEEK >gi|308170475|gb|AEHR01000003.1| GENE 13 11485 - 12399 1082 304 aa, chain - ## HITS:1 COG:SPy1101 KEGG:ns NR:ns ## COG: SPy1101 COG0812 # Protein_GI_number: 15675084 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 4 298 1 293 295 317 54.0 2e-86 MNLMTLRQQGIDIQQNIPLSRFTFTKTGGPAEFLAFPKNLPELELLVKSVRQENMQLTVI GNASNLIIKDGGIDGLVIILTKMNQIIANESDCTITAQAGATIINTSNAARDAGLTGLEF AAGIPGSVGGAVFMNAGAYDGETENVIKSVKVLTRDGVFKTYTHDEMQFGYRHSIVQDTG DIVVSATFGLKAGEKKAIADRMKYLNDLRRAKQPLEYPSCGSVFKRPKGHFVGPMIIEAG LQGTRIGGAEDSKKHAGFIINVGGATATDYLNLIHLIQKVIKEKFDVDLQTEVRIIGKEK RIDD >gi|308170475|gb|AEHR01000003.1| GENE 14 12513 - 13046 473 177 aa, chain + ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 177 1 176 306 122 38.0 4e-28 MNFTAMDFETANRHYDSACSLALVLVRDNKIIDSFYTVINPQMPFDKNNIKIHGITANDV KDAPTMDEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTLATSRA LMPNLKNYRLDTVSNQLNIDLWHHHNALSDSEACAEILIKQNQQFGDEQIKNFIKYI >gi|308170475|gb|AEHR01000003.1| GENE 15 13125 - 13601 458 158 aa, chain - ## HITS:1 COG:lin2184 KEGG:ns NR:ns ## COG: lin2184 COG0802 # Protein_GI_number: 16801249 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Listeria innocua # 2 143 4 141 153 137 47.0 7e-33 MKLLITSDHEMQDLGQILGTHAVAGNILLLTGDLGAGKTTLTKGIAKALGIKRPVKSPTY TIIREYKEGTLPLFHMDMYRLKDGDLSSIDLNDYFEQNGVIVIEWPEFVMDNLPADYLKI NIARIDDTWDSTKRSLVLTSSGENSNIWLNKILPDIEK >gi|308170475|gb|AEHR01000003.1| GENE 16 13598 - 14578 1070 326 aa, chain - ## HITS:1 COG:L107797 KEGG:ns NR:ns ## COG: L107797 COG0280 # Protein_GI_number: 15673641 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Lactococcus lactis # 1 323 1 326 326 362 57.0 1e-100 MKVFDILKQKALSCEQSIVFPEGNDLRALEAVCRLKSERMVNPILLGDVDEITKLAQQNN LNLTDIRIINPLTYNQIDEMVDALVKRRNGKNTAQEAAEMLKHGSYFGTMLVYLHKAAGM VSGAAHSTADTVRPALQIIKTLPGMSRVSGAMIMERETEKYIFSDCAINIDPDAQTLAEI AYQSYLTAKMIGLDPKVAMLSFSTKGSAKGPMIDKVIQATKIVHETHPEVKIDGELQFDA AFVANVAAKKAPNSEVAGKANVFVFPELQSGNIGYKIAQRLGNFTAVGPVLQGLAAPIND LSRGCSANDVYLAGILTAVQAIEAKK >gi|308170475|gb|AEHR01000003.1| GENE 17 14635 - 15330 827 231 aa, chain - ## HITS:1 COG:BH3850 KEGG:ns NR:ns ## COG: BH3850 COG0692 # Protein_GI_number: 15616412 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus halodurans # 7 222 6 222 224 252 56.0 4e-67 MKKFIGNDWDQILDPIFESDKYRQLHEFIKHEYSTKVIYPDMYHIYTAFKLTPFYKTKVV ILGQDPYHNPQQATGMSFSVNPGVALPPSLRNIYKELHNDVGAKIVNHGYLKKWADQGVL LLNAVLTVPYGKANGHQGKGWEFVTDQAIKSLSDRGGVVFILWGKFAQNKIPLIDVNKNF ILKSAHPSPLSASYGFFGSHPFSKCNELLKKLGESPIDWQLPESVAPNDVV >gi|308170475|gb|AEHR01000003.1| GENE 18 15418 - 16281 939 287 aa, chain + ## HITS:1 COG:SA0517 KEGG:ns NR:ns ## COG: SA0517 COG0561 # Protein_GI_number: 15926237 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 284 1 284 289 174 38.0 2e-43 MIKLIASDMDGTLLNEKMQISAENIKAIKYAQKKGVEFLIATGRSKLESAKLLANAGIKV GYINLNGAMLYNTEGHLVFEQDIPTEKSKEIIKILNESGYYFEIVSADNVYSNSKLERIT NVSNLLVDLNQNLDFKHAVPLSSGSEQIMGISFVDNYSNLLNLPNFKVMKFLAFKPDGAT FDQVSKKLLQLGDLVITSSSNTNIEINHKNAQKGIALMHYAKMKGISTNQVMAIGDNLND KSMIERAGVSVAMGNAVDEIKALAKHITLKNTEDGVAHAIYEFLGDN >gi|308170475|gb|AEHR01000003.1| GENE 19 16281 - 16796 417 171 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1299 NR:ns ## KEGG: LGAS_1299 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 161 1 161 171 90 32.0 3e-17 MLYQIHLVNNIFQNQFKVTNQYHEISYFICGCLNTLSQMIILKTKNNEEIGRLYHDKKCP NSKYYIKIKDNAPINITTVNLGYKEVLFAAHLCYWAYGNVKNQQFYCYKGIKKIATIFIA IKSNDITISCDIKDNIDPTYILLTAILITKLHVSTLHLPNLKILTNPQLQA >gi|308170475|gb|AEHR01000003.1| GENE 20 16803 - 17027 272 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309803906|ref|ZP_07697990.1| ## NR: gi|309803906|ref|ZP_07697990.1| hypothetical protein HMPREF9214_0166 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9211_1410 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0333 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_1267 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0325 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9216_1336 [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9214_0166 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9211_1410 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0333 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_1336 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9218_0325 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_1267 [Lactobacillus iners LEAF 3008A-a] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 74 37 110 110 145 100.0 8e-34 MKKELGDKCEISEHSLRKSVKQLYDSIYKWLDHGCLRGVDNFIDDIQNIADYFEFMSSVV DVKPLWLKSLQPKK >gi|308170475|gb|AEHR01000003.1| GENE 21 17533 - 18822 1644 429 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 41 366 19 354 419 174 32.0 3e-43 MKFTKKLATLAVTALAVVSLTACSNKSSNSSAKIPTKISKKTTVVFWHGMVGGQEKALKS MAKEFEAKNPKIHIKLENQGKYSDLQAKINSTLQSPKNLPTISQAYPGWLLVAAQAKKLV DMKPYITNSKIGWGSVTKSDIRADLLKGAQIKGVQYGIPFNKSIEVLLYNKDLLKKYGVK VPKNMAELKKAAKVIYKKSDHKVVGAGFDSLSNYYALGMKEKGHDFNNKIDFTSSDSKSI IDFYANGIKDGYFQTAGSAGYLSGDFSNQKLAMYVGSSAGECFVKMGVGKKFEYGVAPRP SEYNIAQGTDIYMFDSASADQKAAAFMFIKFLLTKENQLAWADKTGYIPVTNTVISSEAY KESKKTKMPPILTKAMANLYSVPVVKNSNAAYAAVNTELQAVFAQAKKHKDWSENIKKGQ HKIDSAWKQ >gi|308170475|gb|AEHR01000003.1| GENE 22 18861 - 20150 1557 429 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1639 NR:ns ## KEGG: LGAS_1639 # Name: not_defined # Def: metallo-beta-lactamase superfamily hydrolase # Organism: L.gasseri # Pathway: not_defined # 1 428 1 432 433 589 66.0 1e-167 MNLKHKTKVTFYNGLTTIGGPMIEVAYNDSHVLFDLGEVFKPDLELADESFQTLIDNQLI GDVPDFYDYHLTGKKLSDSHWKASAAYISHVHLDHSKALNLLDESVKLYTGPITASMLPV LNKDGNYLLPAAGKPKNYTRPIIAADLNVPIKVGDITLEIVPSDHDAYGATGLIIKTPDK KLAYTGDIRLHGYHPEWVEAFMHKGHGCDMLIIESTALSWPNENHSEEFTGPKDEDELID RIVQYQIDNPKRQITFNTYISNVERILRIIKDSPRKVVLSAKRAEFLKLSIGVDVAYYYL PGEEIIPILRSDLEVDYNTLLADESEFLWQAVADFDKLKSGSLYIHSNAEPLGSFDPAYQ PFVDTLEQHQVEVVMLRCSGHASASALEKIIRGFEPSVLVPVHSMHPELLENPCGSRLLP ERNQVFTFE >gi|308170475|gb|AEHR01000003.1| GENE 23 20134 - 20952 865 272 aa, chain - ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 54 271 60 277 277 165 41.0 9e-41 MKKIKTILIYIFVTFFAIITVFPFIYMIFGGLMTYEETTRIPPTFVPGSFKISNYLAVFN QAPFARYFFNTFVTATTTTVVSLFTSILGAFAMANLKFKGKGLIKIILISLLMVPGEAII FTNYTTIMSMGLINTYIGLVIPFLTSIFYMYYLQSYFKSITPTVYKAAMIDGASDWEYIW RILVPMSKSGLITVALLSFISGWNAFLWPLLVTNESDMRLLNNGLAAFATEAGSQTQLQL AAATLIVLPILIVYFVFRKQIIRGVVNHEFKA >gi|308170475|gb|AEHR01000003.1| GENE 24 20954 - 21817 599 287 aa, chain - ## HITS:1 COG:lin0218 KEGG:ns NR:ns ## COG: lin0218 COG1175 # Protein_GI_number: 16799295 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 10 284 15 288 292 159 36.0 6e-39 MKNNQKKAWLFLLPAIISVTIFSIWPIIRAFIISFQGGPLICLNFNGIENYKYIFADTDF WNSLTNTAIYAFMTVPIALAIALALAWFVFSKIRHQSFFEAMFFMPYVTSTIATGIVFRY IFNGKYGLLDFVLKMLHLPAPDWLDDPSMSLISLIIFGIWSSLAFNIVILIGALRNIDPN YYVLADMYGANESEKFWRITIPQLFPTLAFLLTVNLIGAFKVYTQVFALFNGSAGQGNSA ITSVFYIYNKFQVANTPGVAMAATVCLFLFILFITCLQRKLMKRVNS >gi|308170475|gb|AEHR01000003.1| GENE 25 21817 - 22911 1362 364 aa, chain - ## HITS:1 COG:PH0022 KEGG:ns NR:ns ## COG: PH0022 COG3839 # Protein_GI_number: 14589983 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Pyrococcus horikoshii # 7 362 13 370 373 262 41.0 8e-70 MNEDNFIQIKNLKMVYENGYQAISDISFTVKKGELVCLLGPSGCGKTTTLNMVAGLLNPT GGDILVDGKSVLNVAPKDRNIGYVFQNYALYPHMTVLQNVMFPMTVGKNKKSKEEAKQIA ERFMRLTHIEEYANQKPGKLSGGQQQRVSIARALVQQPKILLMDEPLSNLDARLRLKIRE EIRALVKKVGITTLFVTHDQEEALSIGDKIILFNEGVIQQDAASYEIYLNPANQFVANFI GNPVVDNFNVEVSDGKVIGDGFEIPISAFDSDRFKKNLTDGVYTLSLRPENVFPVDNPAD GFFTCKIDDIELIGRERILKFTINGLGQRSLVKVEANVEPGDEVCFGLNLDRAFIFDNNG ERIY >gi|308170475|gb|AEHR01000003.1| GENE 26 23074 - 24063 1039 329 aa, chain + ## HITS:1 COG:L0024 KEGG:ns NR:ns ## COG: L0024 COG1087 # Protein_GI_number: 15673961 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Lactococcus lactis # 1 327 1 326 326 396 55.0 1e-110 MNILVIGGAGYIGSHAVRKLLDSGYHVVVLDNLITGHRKAIDPRAKFYQVDLLNTFLVSK ILRNEKIDAVMHFAAYSLVSESVQKPLLYYQNNITGMISLLNAMNDAKVKYLIFSSSAAT YGIPEKLPITEEAPLKPINPYGETKMMMEKMMLWADKANNIKSIALRYFNVAGATSDGTI GEDHRTESHLIPNILKCADSHDKIFTIYGNDYQTIDGTNVRDYVEVEDLIDAHILALKHL IKTNLSDVFNLGTTHGYSNLEILECAKRITATDIPYKFGPRRGGDPDSLVADSTKARTIL GWQPKHENIDNIIASAWKWHQKHPNGYED >gi|308170475|gb|AEHR01000003.1| GENE 27 24120 - 25319 1275 399 aa, chain - ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 396 1 395 395 416 52.0 1e-116 MKKILAINSGSSSFKYKLFNYPSEEVVAQGQAQRIGLAGATFSLKLADGSKYESEIKIPD HKTAIQLLLTWLPKYNVINDLKEIAGIGHRVVAGGEIFSESALIDKEKLQQIYDLSDYAP LHNPYEADGIRDFMQLLPGVPQVAVFDTSFHHTLDPVHYLYSLPYKYYEKYRARKYGAHG TSVRYVSHRAAELLNKPLNELKMIVCHLGNGASITAIKDGKSYDTSMGFSPVAGITMSTR SGDIDPSVLQYVMKKENISDFNKMINILNNKSGILGISDYSPDMRDIRKRAAAGDVKAKL AKDIFVNRIIKYIGSYYVDMGGLDALVFTAGIGENESLYRQAIVDKLSVLGLKIDEKANS VNGEKVISAVDSKAKILIIPTNEELVIARDVVRLAQINK >gi|308170475|gb|AEHR01000003.1| GENE 28 25485 - 28079 2898 864 aa, chain - ## HITS:1 COG:lin1675_1 KEGG:ns NR:ns ## COG: lin1675_1 COG1012 # Protein_GI_number: 16800743 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Listeria innocua # 5 457 3 455 455 511 54.0 1e-144 MAKEIASATKKKQIDVQAMIDSYVVQAHVALDKMANFSQEQVDKICEAIAKVGEQNSYLL AKMAVEETGRGIVEDKTIKNMFASENIWNSLRHEKTVGIISEDPERQLIKIAEPVGVIAG VTPVTNPTSTVIFKSMIALKTRNTIIFGFHPQAQKCCVKTAELIREAAIKAGAPDNCIQW IEYPSIEATNALMTHPNIQTILATGGPGMVKAAYSSGKPALGVGPGNGPAYIEKTANYQR AAYDIILSKTFDNGMVCASENSVVIDKDIYDKVKKEFEAWNCYFLNKDEIKKFETTFIDP RRGTVAGPIAGKSAYEIGKLCGVDVPEDTKVIIAEYSGVGKEYPLSAEKLSPVFTMYKVS GADEAFKICKDLLSYGGRGHTVGIHTEDKELIKKFALAMSACRILVNTPAALGGIGDLYN NMLPSMTLGTGSYGANSMSHNISAADLLNIKTVAMRRDNMQWIKVPKKTYFEHNAANYLK HMPDVEKFFIVTDETVAGKYANQITDIISQRLGKKSYEVFQAVKEHPTTDVILDGVHRMN IFKPDAIVALGGGSVMDAAKIMRLFYENPDMTLEDSYQKFIDIRKRVVRFPKTNMVQLVC IPTTSGTGSEVSPFAIIKDTQTGIKHTLCDYSLNPDVAIVDDNFVETLPAKLVANSGMEA LAHAMESYVSTMATDFTRGWSMEAIKLIFANLEKSYKGDQAARSKMHNASTLAGMAYANA FLGVGHAIAHTLGSTFNIPSGLSDAITMPYVIKFNAQRPRKLPIRPHYSVFRADKDYAEI ARSLGIQGKNDQELVEGLINKFVELAKSINMTLNLKDNGVSEADFNNKVEQLAVEAYGDQ NIVTNPSAPLIKQIEQLMKKIYVG >gi|308170475|gb|AEHR01000003.1| GENE 29 28409 - 29782 1237 457 aa, chain + ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 13 454 14 454 458 358 44.0 1e-98 MKQKKSHSSKDISMKRSLTNTHIQLIALGGTIGTGLFLGVGNSIELAGPAVILIYTLVGF FLFLLMRALGELILSDLNKNTYIDFITQYLGKVIGTVTGYLYWFSWLSLGMAELTALGLY FRYWWHDLPLWLPGSITLIILLMINLISAKVFGNMEFSFAIIKILTIVAFVLLVFYLLIT NGSTKLYGAISFSNLFKDGGFFAKGANGFFSGFQMVIFSFIGVELIGLTAAEAQDPKKTI VKAINELPVRIILFYVLAILAILLVIPWKQVAINDSPFVQALGATGIKNAACIINFVVIS AAISSTNTFIYSGGRLLFSLNYHGQSNFAKCMGQLNKRQLPENALLFSTLLIGIAPIMNL FLENAFHFIAATSTSMFLIIWSIMIWAHIRYRKQTPEQQLHNFRMPLYPYTDYLVLGFFI TMIGLLLWVPKDRIPMISALVIFSILILSIKFIKKIK Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:26:05 2011 Seq name: gi|308170474|gb|AEHR01000004.1| Lactobacillus iners SPIN 2503V10-D contig00083, whole genome shotgun sequence Length of sequence - 1173 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - LSU_RRNA 1 - 746 95.0 # AE017198 [R:1879440..1882488] # 23S ribosomal RNA # Lactobacillus johnsonii NCC 533 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:26:16 2011 Seq name: gi|308170440|gb|AEHR01000005.1| Lactobacillus iners SPIN 2503V10-D contig00042, whole genome shotgun sequence Length of sequence - 30001 bp Number of predicted genes - 34, with homology - 34 Number of transcription units - 15, operones - 6 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 528 - 562 -0.8 1 1 Op 1 . - CDS 667 - 1767 821 ## gi|309809225|ref|ZP_07703095.1| hypothetical protein HMPREF9215_0831 2 1 Op 2 . - CDS 1742 - 2755 535 ## YPO0392 hypothetical protein 3 1 Op 3 . - CDS 2827 - 4014 583 ## COG0863 DNA modification methylase 4 1 Op 4 . - CDS 4023 - 4817 524 ## Bacsa_1533 type II site-specific deoxyribonuclease (EC:3.1.21.4) - Prom 4892 - 4951 6.4 5 2 Tu 1 . - CDS 4988 - 6010 831 ## COG0270 Site-specific DNA methylase - Prom 6100 - 6159 6.3 + Prom 6755 - 6814 5.7 6 3 Tu 1 . + CDS 6912 - 7199 217 ## gi|309809235|ref|ZP_07703105.1| hypothetical protein HMPREF9215_0836 - Term 7195 - 7229 1.3 7 4 Tu 1 . - CDS 7358 - 8911 2006 ## COG0519 GMP synthase, PP-ATPase domain/subunit - Prom 9054 - 9113 12.2 + Prom 8984 - 9043 11.0 8 5 Op 1 7/0.000 + CDS 9250 - 9828 469 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 9 5 Op 2 . + CDS 9828 - 11111 400 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 11130 - 11159 2.1 - Term 11095 - 11163 9.1 10 6 Op 1 47/0.000 - CDS 11190 - 11552 503 ## PROTEIN SUPPORTED gi|161506945|ref|YP_001576899.1| 50S ribosomal protein L7/L12 11 6 Op 2 43/0.000 - CDS 11597 - 12112 701 ## PROTEIN SUPPORTED gi|227525593|ref|ZP_03955642.1| 50S ribosomal protein L10 - Prom 12250 - 12309 9.9 - Term 12141 - 12169 -1.0 12 6 Op 3 55/0.000 - CDS 12340 - 13032 1032 ## PROTEIN SUPPORTED gi|238855647|ref|ZP_04645947.1| ribosomal protein L1 13 6 Op 4 45/0.000 - CDS 13129 - 13554 689 ## PROTEIN SUPPORTED gi|227525597|ref|ZP_03955646.1| 50S ribosomal protein L11 - Prom 13631 - 13690 7.2 - Term 13612 - 13647 -0.8 14 6 Op 5 . - CDS 13696 - 14247 689 ## COG0250 Transcription antiterminator - Term 14266 - 14290 -1.0 15 6 Op 6 . - CDS 14325 - 14492 160 ## gi|259500946|ref|ZP_05743848.1| preprotein translocase subunit SecE 16 6 Op 7 . - CDS 14498 - 14647 230 ## PROTEIN SUPPORTED gi|42518502|ref|NP_964432.1| 50S ribosomal protein L33 - Prom 14720 - 14779 9.8 + Prom 14684 - 14743 8.2 17 7 Tu 1 . + CDS 14785 - 16050 1312 ## COG0477 Permeases of the major facilitator superfamily + Term 16054 - 16089 5.1 - Term 16035 - 16083 7.1 18 8 Tu 1 . - CDS 16164 - 16688 486 ## LGAS_0345 ComX - Prom 16746 - 16805 7.4 19 9 Op 1 7/0.000 - CDS 16821 - 17597 543 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 20 9 Op 2 8/0.000 - CDS 17578 - 18021 320 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 21 9 Op 3 1/0.000 - CDS 18008 - 19351 1304 ## COG0215 Cysteinyl-tRNA synthetase - Prom 19450 - 19509 10.6 - Term 19460 - 19508 2.1 22 10 Op 1 . - CDS 19539 - 21038 1660 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 23 10 Op 2 1/0.000 - CDS 21118 - 22497 1416 ## COG1066 Predicted ATP-dependent serine protease 24 10 Op 3 . - CDS 22497 - 23048 760 ## COG0756 dUTPase - Prom 23157 - 23216 10.5 + Prom 23107 - 23166 9.1 25 11 Tu 1 . + CDS 23196 - 24542 1411 ## COG3579 Aminopeptidase C 26 12 Op 1 . - CDS 24583 - 25518 862 ## COG4639 Predicted kinase 27 12 Op 2 . - CDS 25582 - 26259 577 ## COG0588 Phosphoglycerate mutase 1 28 12 Op 3 . - CDS 26261 - 26461 256 ## gi|259500932|ref|ZP_05743834.1| conserved hypothetical protein 29 12 Op 4 . - CDS 26464 - 26700 280 ## gi|309808408|ref|ZP_07702307.1| hypothetical protein HMPREF9211_1071 30 12 Op 5 . - CDS 26725 - 27612 894 ## COG1230 Co/Zn/Cd efflux system component 31 12 Op 6 . - CDS 27627 - 28316 948 ## COG0406 Fructose-2,6-bisphosphatase - Prom 28347 - 28406 7.6 + Prom 28344 - 28403 8.8 32 13 Tu 1 . + CDS 28460 - 29038 412 ## COG0693 Putative intracellular protease/amidase + Term 29194 - 29235 -0.9 - Term 29016 - 29048 2.5 33 14 Tu 1 . - CDS 29053 - 29376 354 ## COG2076 Membrane transporters of cations and cationic drugs - Prom 29445 - 29504 8.4 34 15 Tu 1 . - CDS 29536 - 30000 341 ## COG5523 Predicted integral membrane protein Predicted protein(s) >gi|308170440|gb|AEHR01000005.1| GENE 1 667 - 1767 821 366 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809225|ref|ZP_07703095.1| ## NR: gi|309809225|ref|ZP_07703095.1| hypothetical protein HMPREF9215_0831 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9215_0831 [Lactobacillus iners SPIN 2503V10-D] # 6 366 1 361 361 632 99.0 1e-179 MEKGILDFNSDRTMLIESKNQLLFQDFLNYISSDSQVRIKEIEELEIQQKPKNRNIKMLK GESLKDNEIDDTNIRTIYYQNNVEKIFNSIKIGDWKIEYNNGDTTNISVLDYPDAKMRFI LNELEVAKEYRLDDILEATDCKGTKQIIPQHIDIQPAKNVSFDSKNEKLIVMSPSDIVFN IKFIDKISSKEFDFNQSIPCVKKTVDIKANKTGFLHPFIKLNKTSVLDRDLVNFINEFNQ VYDNDSCRMLRVASIRTLIEVICCEILDSLNENKNEYLKENFKKIFFENSIKNNLFSKVT DDRDRRALTSIYEANKHSLITGTFVDKYNYSTHGLTRIVNEEFYKGDQPIFNLLYSYLLF VSQDKM >gi|308170440|gb|AEHR01000005.1| GENE 2 1742 - 2755 535 337 aa, chain - ## HITS:1 COG:no KEGG:YPO0392 NR:ns ## KEGG: YPO0392 # Name: not_defined # Def: hypothetical protein # Organism: Y.pestis # Pathway: not_defined # 3 189 6 194 240 93 36.0 1e-17 MRLSVSGKIIKEISEKIPSTTYSMVELIKNAYEAMASYIEINIYDEMIEIIDDGEGMDLS DIRDLLIVSHSNKEYGVIKNGRIISGEKGLGFFSVFKFGSKVTVHTSKQELDYSFSIDMN EIENLKDIYDSNVDISKSVSVDVKKHGTKIVIENLNSETMEIFCKVLNNPSNFLKLQNSI IDDSFEIKLNNLMKNSKNINSDISNLSLKNKIIAEAFFDSDKNYANDCFYYRICINNSWY DIDIDKKYNRILKKNKFGIKFQITYFKLSKGGVKKVSDYYKDQNLKKISPLVYFNNVYFS NELYNVEVNSSMRSSKVIRQQVGIINVFFDGKGNFGF >gi|308170440|gb|AEHR01000005.1| GENE 3 2827 - 4014 583 395 aa, chain - ## HITS:1 COG:YPO0391_1 KEGG:ns NR:ns ## COG: YPO0391_1 COG0863 # Protein_GI_number: 16120725 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Yersinia pestis # 1 325 11 356 371 142 33.0 1e-33 MNKIAEEINKYPQDYWDFKGITKSGIHNIGKYPATMVPDMQYQLLSVISKHLNNKNISLL DPFCGSGTTLVIAQELGINSVGIDINPYATLLSFVKTHQYNRTDVCDAISIIKNNLEQES NFPIYDFVNIKKWFRDDIIKSLSQIRHCILLEKNQDIRKFFWICLSEVIFKFSNDRTSTF KLHVLPKEKIDLIEDRCIEYFIKIINDNSKHLNYINMTSSNIIYGDSSSIINNKLKGEFD IICTSPPYGDNPTTVTYGQASILFLKWIDSKDLYCSQELLEKYTTIDKISVGGEKRKIIN TKDIKSLQDFLGKISLKKQAKVINFFEDYYISLKCMKKCLSKSGYLIMTVGNRSVDTVRQ PLDNITIEIACKMGLQVVSKFNRNILYKKHHLHFL >gi|308170440|gb|AEHR01000005.1| GENE 4 4023 - 4817 524 264 aa, chain - ## HITS:1 COG:no KEGG:Bacsa_1533 NR:ns ## KEGG: Bacsa_1533 # Name: not_defined # Def: type II site-specific deoxyribonuclease (EC:3.1.21.4) # Organism: B.salanitronis # Pathway: not_defined # 1 263 55 316 317 323 60.0 3e-87 MYKVSALAGTNKILELEPFILDDGDDELELKIQTDDKGKDGDVRDVLIIRKDIEWEIGLS VKHNNFAVKHSRLSKGLDFGEKWYGIKCSDKYWEDIKPIFDYLENEKTKESRWRDLPSKE DNVYLPLLNAFKDEIDRQNNAYGKDIPKLMVEYLLGEFDFYKVIGIDSRQMTQVQSYNLR GNLNKEGNVRKRSVKLPRVSLPTRIVSLEFSPGSKNTLELYLDGGWQFSFRIHNASTKVE TSLKFDIQIIGMPTTIISIDCKWK >gi|308170440|gb|AEHR01000005.1| GENE 5 4988 - 6010 831 340 aa, chain - ## HITS:1 COG:BH3508 KEGG:ns NR:ns ## COG: BH3508 COG0270 # Protein_GI_number: 15616070 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Bacillus halodurans # 4 327 9 311 326 229 40.0 6e-60 MKLISLFSGAGGLDLGFKKAGYEIVVANEFDKTIWKTYEKNNATKLIKGDICKIPSDEFP KCDGIIGGPPCQSWSEAGSLKGINDSRGQLFYQYIRILKDKKPKFFLAENVKGMMAKRHS VAVENIVLQFEKAGYDVFIHLLNASDYGVPQDRKRVFYVGFRKDLNINFDIPPKPYDYKL TFRDAIYDLKDNAIPALEKNKTNGDNCKFLNHEYFIGSYSPIFMSRNRVRGWDEQAFTVQ ASGRQCQIHPQAPKMIRKDINKYIFEPGKEELYRRLSVRECARIQGFPDDFKFYYTNLND AYKMIGNAVPVNLAYEMAKAIELVLNKPSIFFYPKQLQMI >gi|308170440|gb|AEHR01000005.1| GENE 6 6912 - 7199 217 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309809235|ref|ZP_07703105.1| ## NR: gi|309809235|ref|ZP_07703105.1| hypothetical protein HMPREF9215_0836 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9215_0836 [Lactobacillus iners SPIN 2503V10-D] # 1 95 1 95 95 162 100.0 7e-39 MLKTSGLLFTPNADGSANIGYEDYNVELFDGADYEVMYYLDEYNFGLLLDLLGISNKDKI KNHLIDTFDKNFDSNKFEDFCKEKNIKFRKNVHIR >gi|308170440|gb|AEHR01000005.1| GENE 7 7358 - 8911 2006 517 aa, chain - ## HITS:1 COG:SP1445_2 KEGG:ns NR:ns ## COG: SP1445_2 COG0519 # Protein_GI_number: 15901295 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Streptococcus pneumoniae TIGR4 # 202 517 1 316 316 502 75.0 1e-142 MTKKNLRDFDKIIVLDFGSQYNQLITRRLRDFGIYSELLSHDLSAEKIKEINPKGIIFSG GPNSVYDQDAMRIDSDIFKLGIPILGICYGMQLISHVFGGKVERAENSEYGRADISVADA TEGLFAGLPVKQTVWMSHGDLVTQVPAGFTTIASSVNCPIAAIANAEENIYGIQFHAEVR NSEYGLDILKNFAFNICHAEANWTMDDFIDMEIEDIRQTVGNKKVILGLSGGVDSSVTAT LLHRAIGDQLTAIFVDHGMLRKNEAEQVMAALNKELGINIIKVDAADRFLSKLAGVTEPE RKRKIIGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKDM HFSLIEPLRKLFKDEVRVLGEKLGLPHDLVWRQPFPGPGLGIRVIGEITAEKLAIVRESD AILREEIKNAGLQEDIWQYFTVLPGIRSVGVMGDGRTYDYTIGIRAVTSIDGMTADFAHI PWEVLQKISTRIVNDVDHINRVVYDITSKPPATIEWE >gi|308170440|gb|AEHR01000005.1| GENE 8 9250 - 9828 469 192 aa, chain + ## HITS:1 COG:BH1514 KEGG:ns NR:ns ## COG: BH1514 COG0503 # Protein_GI_number: 15614077 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Bacillus halodurans # 1 191 1 191 198 206 56.0 3e-53 MEILEKRIRQDGELLPGNVLKVNSFLNHQIDPDLMFAIGQEFGKLFNGEKITKILTCEAS GIAPALTTGLIFHVPVVFARKSKPSTLNKECYETEVFSYTKQVTNKINVDKKFLSKDDSV LIIDDFLANGEAVKGLINIAKQANSKVAGVGIVIEKTFQGGSKWITDNGYHLESLARIAN FDNNTVHFVGEE >gi|308170440|gb|AEHR01000005.1| GENE 9 9828 - 11111 400 427 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 14 427 19 425 447 158 26 3e-38 MDKQNTNLGKQAILGLQHLLAMYSGAVAVPMLIGTALHFNSAQMTYLISIDIFMCGLATA VQLFRNKYFGIGLPVVLGCAIQAVAPLQMIGQHFSITTMYGAIIVAGIFVVLISSQFARI KKLFPPVVTGSLITVIGLSLIPIAFQNIGGGNSLAKNFGDIKCLATGFATVLIILAFQAF GKGFLKSISILLGLIFGTMIASTLGMVSLEPVAQASWFHLPQPFYFGAPSFEISSCITMI IIAVVSMVESTGVFLAIGNIINKDITKQDLTKGYRAEGLAQILGGIFNTFPYTTFSNNVG VLELSGITSKKPIYWAAGFLMLMGLLPKIGALVSIIPVSVLGGAMLIMFAIVVVQGVNML SQVDISKSENILIIATSIGLGLGVSVYPQIFQQLPKTLQLFLGNGIVVASFSATMLNLLF SKRNKNK >gi|308170440|gb|AEHR01000005.1| GENE 10 11190 - 11552 503 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161506945|ref|YP_001576899.1| 50S ribosomal protein L7/L12 [Lactobacillus helveticus DPC 4571] # 1 120 1 120 120 198 86 4e-50 MALETDKIIEALKGASILELNDLVKAIEEEFGVTAAAPVAAAATADAAAAKTEFDVELTE IGQEKVKVIKVVKEITGLGLKDSKDLVDGAPKNIKEGVSEAEANDIKAKLEEVGAKVTVK >gi|308170440|gb|AEHR01000005.1| GENE 11 11597 - 12112 701 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525593|ref|ZP_03955642.1| 50S ribosomal protein L10 [Lactobacillus jensenii JV-V16] # 1 171 1 171 172 274 80 4e-73 MEVNSLSKAAIAAKEKYVDAFSEELKAAKSLLVVDYLGLTVDEVTSLRKELRESDVKMKV VKNTYLKRAAEKAGIEGLDETFSGPSAVVYTDNADDITEPARIVSKYAKDIEALSIKGGL LEGRVTSEEEIKQIASIPGREGLLSMLVSVLQAPVRNVAYAVKAVAESKGE >gi|308170440|gb|AEHR01000005.1| GENE 12 12340 - 13032 1032 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855647|ref|ZP_04645947.1| ribosomal protein L1 [Lactobacillus jensenii 269-3] # 1 229 1 229 230 402 88 1e-111 MPKHGKKYLEAAKLVEAGKFYTVDEAMELVKKTSYAGFDATVEVSFNLSVDPKQADQQIR GSLVLPNGTGKTQKVIVFAEGPQAEAAKAAGADEVGSDDLVEKVQNGYFDFDVVVATPMM MAKVGRLGRVLGPKGLMPNPKTGTVTMDVAKAVENVKAGQVEYRVDKQGLIHAPIGKVSF ESSKLAENFNALREVILRARPAAAKGQYMKSVAVSATFGPGIYLDPMTLM >gi|308170440|gb|AEHR01000005.1| GENE 13 13129 - 13554 689 141 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525597|ref|ZP_03955646.1| 50S ribosomal protein L11 [Lactobacillus jensenii JV-V16] # 1 141 1 141 141 270 97 1e-71 MAKKVINVVKLQIPAGAATPAPPVGPALGQAGINIVGFTKDFNARTADQKGMIIPVVITV YEDRSFDFITKTPPAAVLLKKAAKVEKGSGEPNTKKVAKVTKAQVKEIAETKMQDLNAAD VEAAMRMIEGTARSMGFEVED >gi|308170440|gb|AEHR01000005.1| GENE 14 13696 - 14247 689 183 aa, chain - ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 6 180 2 177 178 185 56.0 4e-47 MVESSKKQWYVLHTYSGYEEKVKKDVLSRAQSMGMQDYIFRVIVPEVKKNEVVRGQEQKV DEKVFPGYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYDDEIKRILADQNKE AAPQSYDFEVGETVTITEGPFKNMEGKINSIQTDKEKLLVSIDMFGRETNAELDFTQVKK FEA >gi|308170440|gb|AEHR01000005.1| GENE 15 14325 - 14492 160 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500946|ref|ZP_05743848.1| ## NR: gi|259500946|ref|ZP_05743848.1| preprotein translocase subunit SecE [Lactobacillus iners DSM 13335] preprotein translocase subunit SecE [Lactobacillus iners AB-1] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 11V1-d] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 09V1-c] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 03V1-b] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 01V1-a] preprotein translocase, SecE subunit [Lactobacillus iners SPIN 2503V10-D] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 3008A-a] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2062A-h1] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2052A-d] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2053A-b] preprotein translocase subunit SecE [Lactobacillus iners ATCC 55195] preprotein translocase, SecE subunit [Lactobacillus iners UPII 143-D] preprotein translocase, SecE subunit [Lactobacillus iners UPII 60-B] preprotein translocase, SecE subunit [Lactobacillus iners SPIN 1401G] preprotein translocase subunit SecE [Lactobacillus iners DSM 13335] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 11V1-d] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 09V1-c] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 03V1-b] preprotein translocase, SecE subunit [Lactobacillus iners LactinV 01V1-a] preprotein translocase, SecE subunit [Lactobacillus iners SPIN 2503V10-D] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2053A-b] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2052A-d] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 2062A-h1] preprotein translocase, SecE subunit [Lactobacillus iners LEAF 3008A-a] preprotein translocase subunit SecE [Lactobacillus iners ATCC 55195] preprotein translocase, SecE subunit [Lactobacillus iners UPII 143-D] preprotein translocase, SecE subunit [Lactobacillus iners UPII 60-B] preprotein translocase, SecE subunit [Lactobacillus iners SPIN 1401G] # 1 55 1 55 55 95 100.0 2e-18 MFKFIKEVIASMKKVTWPTLEQNRRDTSTVVWCSILFAAYLGVLDFIFQQLVKLL >gi|308170440|gb|AEHR01000005.1| GENE 16 14498 - 14647 230 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518502|ref|NP_964432.1| 50S ribosomal protein L33 [Lactobacillus johnsonii NCC 533] # 1 49 1 49 49 93 85 2e-18 MVVKKASLACTICGSRNYSIAASKSRTQRLELNKFCKYCGKKTLHKETR >gi|308170440|gb|AEHR01000005.1| GENE 17 14785 - 16050 1312 421 aa, chain + ## HITS:1 COG:PA2589 KEGG:ns NR:ns ## COG: PA2589 COG0477 # Protein_GI_number: 15597785 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 40 420 27 402 404 88 25.0 3e-17 MIFIDYILLESRLFIVTNQRSIYAWWIFIVSCLISLIGFGLIVNTVGLFFIPLCKELHVN KSSISLMVTLQNLASAITLLIAGKIMSKVNLKWLLTILFAIIGIGFLSLSIANNLGWFYI VYIIIGICQPGAFILSIPVLLQKWFNAKLGTVMGIALGLSGIGGTIFNPLVADVIKSFGW RGGFIFEALLILLILVPASLTIIPQPNDKHHAYGEPSEVDHVKPGNESGLTFKQARKTIV FYSLTIAMFLLQFVSGSVQHVSGSILHIGFSIQTAGLVVSGIMFGAALGKISIGFLLDYF NAKVVLLFFALFGIGGWYGQIVLKNGLSLILSAFILGLGQGICLVALPYLIKKEFGVKDY SNILSIINMVGALALSFAVLIDALLFDTTNSYNIGWYLNILAFLISFILLALTLKNYPNK K >gi|308170440|gb|AEHR01000005.1| GENE 18 16164 - 16688 486 174 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0345 NR:ns ## KEGG: LGAS_0345 # Name: not_defined # Def: ComX # Organism: L.gasseri # Pathway: not_defined # 2 174 12 185 185 150 45.0 3e-35 MRVKQKDNDALQQLFVRYKPVVNKIKAQYYVRNYDYQDWDQEAMIVCYEACCLYDFERNS QFGAFYKTKFTNHVRSLLRYELAKRREANRTAISYEYGNDTGIIMEKFTNDYKLPISEIY SQFLSNLSELELLSILVYLGKLSHQQACKIGRCDRLKLLQAKARCKRKLKDELF >gi|308170440|gb|AEHR01000005.1| GENE 19 16821 - 17597 543 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 7 254 5 252 255 213 44 9e-55 MKSDSNNVDFVFGRHAGLDFLRTQDASLINKIFLQNGVQASIADQVYQLAKKKKIIVQSV PKSKLDKLVDQQNHQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSIL RTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFG TAMSGDNYTNWDARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGIL LYQMFNSRQAVKNGQIKQ >gi|308170440|gb|AEHR01000005.1| GENE 20 17578 - 18021 320 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 13 140 9 136 141 127 50 6e-29 MLKPKKIVEKDIDPNTIGSLALAYLGDGVYEAAIRQHLVKGGIVRPQHLQGYATHYVSAK AQAGLITKMKELNKLTAEEIAIFKRGRNANSYTHAKNTSISTYKLSTGFEAMIGYLYLSK QYDRLDNLIAWCIEQVENGENNEKRFE >gi|308170440|gb|AEHR01000005.1| GENE 21 18008 - 19351 1304 447 aa, chain - ## HITS:1 COG:L0348 KEGG:ns NR:ns ## COG: L0348 COG0215 # Protein_GI_number: 15673833 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Lactococcus lactis # 1 443 24 446 448 466 53.0 1e-131 MYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYEVKYISNFTDVDDKMINQARKENVS VADLADRYIKAFVADTTALNIKPATFNPRATEEITDIISFIKVLIAKGYAYVVDNDVYFR AKKFTKYGCLSGQNIDELEEGASQHISVEEQKKKEDAIDFALWKGQKTLDEIAWNSPWGK GRPGWHIECSVMSTKYLGNTIDIHGGGQDLQFPHHENELAQSEAKTGQKFVNYWLHNGFV TVGEKQEKMSKSLNNFITVHDLLKKVDPQVLRFYMSSVQYRKPINYTEDGLRQAETVLKR YKNILRNIEERLSEKNDATDSDLAERLIDAKKKFIAAMDDDFNVQNALSVMHELTLHVNV HLNNDFIDHKNLQDFVQLMDEWLLIFGVKITTEMENDDTIQKLVDQRNLARQNKDWATSD QIRDELLAKGIILEDTPQGTRWHHVKA >gi|308170440|gb|AEHR01000005.1| GENE 22 19539 - 21038 1660 499 aa, chain - ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 3 491 4 488 491 547 57.0 1e-155 MATEKIRVRYAPSPTGHLHIGNARTALFNYLFARHNKGTMVLRIEDTDQKRNVEGGSKSQ MENLHWLGIDWDEGPDVGGEYGPYRQSERKDIYNKYIQQLLDEGKAYYSYTTSEELEAQR EEQRAMGIAPHYTYEYEGMTADEIKQAQAAAEAKGLKPVVRIHIPERRTYAWDDMVKGHV SFESDTIGGDFVIQKRDGMPTYNFAVVIDDHLMEITHVLRGDDHVANTPKQLVVYEAFNW TPPKFAHMTLIINAATGKKLSKRDESVLQFIEQYRDLGYLPDAMFNFITLLGWSPVGESE LFGRKELIKLFDPKRLSKSPAAFDKKKLEWVNNQYVKNADRDTLLDLSLNNLQEAGLVEQ DPNPEKMEWIRQLVNIYSVQMSYTKQIVDLGRIFFEEEPKLTEAELDEIKNDDARPVIEE FKKQLSQVPRFTAVQAMNAIMATRAATGVKGRKLFMPIRIAATRSMIGPGIGEAIELMGK ERVMHHLELTLTELNEANI >gi|308170440|gb|AEHR01000005.1| GENE 23 21118 - 22497 1416 459 aa, chain - ## HITS:1 COG:L0303 KEGG:ns NR:ns ## COG: L0303 COG1066 # Protein_GI_number: 15674046 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Lactococcus lactis # 1 458 1 452 453 534 58.0 1e-151 MAKLKTQYRCKNCDYVSASYLGRCPNCGAWNQLKKETEVAKTTSNRLTASRLITAIGNNE PKKLSEIDIKKQIRITTPFSELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANS HKVLYVSGEESASQIKMRAERLHISDTELLLYSETNMENIREQIVDLKPEFLVIDSIQTM NEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILEHMVDTVLY FEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPNSTGSAIVV SLEGTRPILADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNLMLQNQDAFLTA TGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGLTGEIRRINNIEARVKEAATR GFKRIFVPKYNVSAKLQSHTTIEIVGVISLMEALKIEFT >gi|308170440|gb|AEHR01000005.1| GENE 24 22497 - 23048 760 183 aa, chain - ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 178 1 149 150 132 45.0 3e-31 MKKRGFEVVSKYRDANINLPKRQTKGSAGYDFEAAVDMTIPSIWSLNFVRIFRLIRNQHI LNEFDFEKAEKIIKPFLVPTGIKSYMGDDEVLILANRSSNTFKRNLSLPNGIGVVDSDYY NNDNNEGEIFFQFINYGVRPFKIKKGDRIGQGIFMPFLKADEDGDLLVKRQGGFGSSGFG GEK >gi|308170440|gb|AEHR01000005.1| GENE 25 23196 - 24542 1411 448 aa, chain + ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 1 448 4 445 445 464 52.0 1e-130 MTKEITSAIIDNFEKDFASRKDSQIAARAVQQNGIFKASQNLQTKVNLDPTFSIEIETGK VANQKASGRCWMFSALNTMRHPLQKNFKIKDFELSQNYTNFWDKFEKANWFFENVISTAN DDLGDRKVSFLFGTPQQDGGQWDMLCGIIEKYGIVPKYIYPETFSATASSALNDTLNTLL RKHGLELRKLVQNGTSSQDVQTRKDEMLKEVYRVLAISLGVPPKTFDFEYKDDDNQYHRD ANLTPKEFFKKYVGWDLSQYISTINAPTADKPFHKVFSVEYLGNVVDGRQVRHLNLPIDE MKDLIIKQLKSGEVVWFGSNVVKNSERQEGLLDTELYKRNELFDIDLNLSKADALNSGES LMDHAMVITGVDLVDGKPTKWKIENSWGEKPGFKGYFVMSDAWFDSFVYQAVVNKKHLSA ELKEIFEDGSKAPIQLLPWDPMGALAKF >gi|308170440|gb|AEHR01000005.1| GENE 26 24583 - 25518 862 311 aa, chain - ## HITS:1 COG:FN1603_1 KEGG:ns NR:ns ## COG: FN1603_1 COG4639 # Protein_GI_number: 19704924 # Func_class: R General function prediction only # Function: Predicted kinase # Organism: Fusobacterium nucleatum # 1 142 1 137 174 75 31.0 1e-13 MRKIFLLRGAPGSGKSSLISRNHLQPYAISRDAIRLLLANLTFYHDQETDTLHQVIRHSV SDEEEQILDSLVERKMQWGETIIVDGTHITPDKIEHFKPCVDKYRYDLFVIDLMYNNTLE GLLKRNKVRAQYDWVRPEIITWMYNQYVEHRAVPDWAIEISPLGIERALSQKEKNLDAFN HVICVPNEVPEEDFPHVHISNFYFSFNDKFTEKYGTYRNVVNLAKTEQEAIEQFKLPFFV FKFHHKHFLISAKPIRNEMLDPIKKVKGTWIYTTGLYNVADFLKDYPVNEQSHVHQFNLD HIDAKRLLYIW >gi|308170440|gb|AEHR01000005.1| GENE 27 25582 - 26259 577 225 aa, chain - ## HITS:1 COG:NMA1801 KEGG:ns NR:ns ## COG: NMA1801 COG0588 # Protein_GI_number: 15794692 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis Z2491 # 2 221 1 224 227 201 46.0 1e-51 MVKLVLVRHGESIANANNTYTGWDDVALSPLGIKQAQQAGYKLKKVDNFLPTAIHTSVLS RAIVTANIIADICNFLYLPIYKTWRLNERHYGALRGMNKQISKRVYGTKQVLSWRRGFES IPPLLATPSNDRRYQIGDLKNIPRGESLHQTQNRLMPYYYDHIASKLLLGQDQLIVAHGS SLRALIKKIENINDQDIVKVEVANAEPIIYTLDANLKIIDKNILR >gi|308170440|gb|AEHR01000005.1| GENE 28 26261 - 26461 256 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500932|ref|ZP_05743834.1| ## NR: gi|259500932|ref|ZP_05743834.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_01240 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_1113 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0937 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_1272 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_1113 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0937 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_1272 [Lactobacillus iners SPIN 1401G] # 1 66 1 66 66 90 100.0 5e-17 MKVSIWTAIIVIIVGLYDLAYAFNRRQDLQDKSSCFKKRRMGIIGFIILGIIFVLLGVFL LFVGER >gi|308170440|gb|AEHR01000005.1| GENE 29 26464 - 26700 280 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309808408|ref|ZP_07702307.1| ## NR: gi|309808408|ref|ZP_07702307.1| hypothetical protein HMPREF9211_1071 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9211_1071 [Lactobacillus iners LactinV 01V1-a] # 1 78 1 78 78 84 97.0 3e-15 MKLDSEIFSKELALLKNKTVTLSKKIQEKEWPLIRQKTTKLVNQTKKFTVQKSKDIYHIS KKTLDRTIIDLSKRCKKK >gi|308170440|gb|AEHR01000005.1| GENE 30 26725 - 27612 894 295 aa, chain - ## HITS:1 COG:PH0896 KEGG:ns NR:ns ## COG: PH0896 COG1230 # Protein_GI_number: 14590752 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Pyrococcus horikoshii # 16 291 17 291 295 225 41.0 7e-59 MKKDYTSVKLIWITILNLIITIAEIIGGIACGSLALLSDALHNLSDTGAIIMSFIAHRIS RKNKSNTKTFGYDRAEIIAAFANGITLIAICIVLFVEALLNLKNPEPIKGNMMLIVSIIG LMANILSMFAVHNDTKKNINIKSTFVHMLSDALSSVVVVIAALIIKFWNWRWIDPVLTIL VSIFILIEALKITYKAANILMESNPCIDLEQVKQRILKINEIEHVHHVHLWQYSDKLIMM DAHINVSADMKIEDLENIYVKVGQELLPLGINHITLQAERNRGLNNNMISNNNLD >gi|308170440|gb|AEHR01000005.1| GENE 31 27627 - 28316 948 229 aa, chain - ## HITS:1 COG:CAC0167 KEGG:ns NR:ns ## COG: CAC0167 COG0406 # Protein_GI_number: 15893461 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Clostridium acetobutylicum # 6 223 7 220 228 96 32.0 5e-20 MYTEIYLIRHGETMFNQLNKVQGWADSPLTVKGINDLRVTASNLSQIHFDRMYSSDLKRA IDTVHLIKDYNMVSQIGKIKKLPAFREVFFGGFEGDDIYETWRQVSIAGGMKPETNVCKI IDTLGIKEFRNATKKADERHLAENAKELDDRIMRAVHQIKEESDGLNRVLLVTHGDFIKS LGIKYWTQYSGKGDIEFPTNGSMTRGIFNQSGKFEIVDYNINNSDLINI >gi|308170440|gb|AEHR01000005.1| GENE 32 28460 - 29038 412 192 aa, chain + ## HITS:1 COG:SP0804 KEGG:ns NR:ns ## COG: SP0804 COG0693 # Protein_GI_number: 15900697 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Streptococcus pneumoniae TIGR4 # 1 191 1 184 184 147 40.0 2e-35 MVRTAVIFANGCEEIEGLSIVDILRRLNIECDMIGLDSLDITGGHNIRFKCDKLISNDLL NYDMVALPGGMGGTQLLASNIDLQNIMKKRFANKKWNAAMCAAPLAFSKFGLLKQANYTC YPGFEKNISRENPQATFVDDLTVIDNKNKLITSRGPATAMSFAYAIAQTLQCKTAEIESN MLYTYLLKKSRD >gi|308170440|gb|AEHR01000005.1| GENE 33 29053 - 29376 354 107 aa, chain - ## HITS:1 COG:BS_ebrB KEGG:ns NR:ns ## COG: BS_ebrB COG2076 # Protein_GI_number: 16078792 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 2 106 3 107 117 75 42.0 2e-14 MGYVELILAIVFEIIATAFLKLSNNFTNVWYSFGTIISYCLCYYLFSLSLKSIALGVAYA TWCGVGIIFTGIVSYLLWHESFPLPKLIGIILIIIGVVLCNLVSSHH >gi|308170440|gb|AEHR01000005.1| GENE 34 29536 - 30000 341 154 aa, chain - ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 64 124 278 338 345 58 44.0 3e-09 ARSFSQTGEAKYHKCARSFSETSEAKNSECTRSSSNTSETKTPSAPEVSLTPEKPKTPSV PEVPVTPEKPKTPSVPEVPVTPVKPKTPSVPEVPVTPEKPKTPSVPEVSVTPVKPKTPSV PEVPAKKANASTIVKSHITKKIKQYSKEKIKIYI Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:27:38 2011 Seq name: gi|308170353|gb|AEHR01000006.1| Lactobacillus iners SPIN 2503V10-D contig00004, whole genome shotgun sequence Length of sequence - 86217 bp Number of predicted genes - 88, with homology - 86 Number of transcription units - 31, operones - 16 average op.length - 4.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 23 - 913 1061 ## COG2017 Galactose mutarotase and related enzymes 2 1 Op 2 24/0.000 - CDS 930 - 2324 1226 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 3 1 Op 3 4/0.000 - CDS 2335 - 2859 827 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 4 1 Op 4 5/0.000 - CDS 2863 - 3699 857 ## COG4974 Site-specific recombinase XerD - Prom 3728 - 3787 5.3 5 1 Op 5 6/0.000 - CDS 3789 - 5102 1420 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation 6 1 Op 6 . - CDS 5152 - 5895 817 ## COG0551 Zn-finger domain associated with topoisomerase type I 7 1 Op 7 13/0.000 - CDS 5925 - 7238 1448 ## COG0550 Topoisomerase IA 8 1 Op 8 2/0.143 - CDS 7308 - 8153 763 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 9 1 Op 9 8/0.000 - CDS 8202 - 8954 697 ## COG0164 Ribonuclease HII 10 1 Op 10 . - CDS 8951 - 9790 1055 ## COG1161 Predicted GTPases - Prom 9836 - 9895 13.4 11 2 Op 1 1/0.143 - CDS 10004 - 11386 1216 ## COG0793 Periplasmic protease 12 2 Op 2 . - CDS 11391 - 11624 234 ## COG4479 Uncharacterized protein conserved in bacteria 13 2 Op 3 . - CDS 11627 - 12478 824 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 12527 - 12586 11.0 + Prom 12414 - 12473 8.3 14 3 Tu 1 . + CDS 12604 - 13269 655 ## COG1272 Predicted membrane protein, hemolysin III homolog 15 4 Tu 1 . - CDS 13366 - 14742 1416 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - Prom 14924 - 14983 5.6 + Prom 14462 - 14521 6.8 16 5 Tu 1 . + CDS 14666 - 15610 633 ## COG1284 Uncharacterized conserved protein + Term 15612 - 15663 9.6 - Term 15599 - 15649 3.2 17 6 Tu 1 . - CDS 15676 - 17094 1059 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - Prom 17125 - 17184 4.5 18 7 Tu 1 . - CDS 17209 - 18456 1084 ## COG0457 FOG: TPR repeat - Prom 18481 - 18540 1.9 - Term 18481 - 18527 5.5 19 8 Op 1 3/0.000 - CDS 18546 - 18821 457 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 18894 - 18953 3.8 - Term 18854 - 18887 -0.9 20 8 Op 2 3/0.000 - CDS 18967 - 20274 1645 ## COG1160 Predicted GTPases - Term 20291 - 20322 -0.6 21 8 Op 3 21/0.000 - CDS 20344 - 21531 1710 ## PROTEIN SUPPORTED gi|227520801|ref|ZP_03950850.1| 30S ribosomal protein S1 22 8 Op 4 . - CDS 21594 - 22256 221 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 - Prom 22281 - 22340 5.2 23 8 Op 5 . - CDS 22344 - 22937 385 ## COG3601 Predicted membrane protein - Prom 23133 - 23192 10.1 - Term 23163 - 23203 5.1 24 9 Op 1 . - CDS 23206 - 23985 837 ## gi|309809260|ref|ZP_07703129.1| hypothetical protein HMPREF9215_0032 25 9 Op 2 12/0.000 - CDS 24052 - 24771 825 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 26 9 Op 3 21/0.000 - CDS 24790 - 25356 609 ## COG1386 Predicted transcriptional regulator containing the HTH domain 27 9 Op 4 . - CDS 25358 - 26089 690 ## COG1354 Uncharacterized conserved protein 28 9 Op 5 . - CDS 26086 - 26445 407 ## LGAS_0885 riboflavin biosynthesis acetyltransferase RibT 29 9 Op 6 . - CDS 26456 - 27346 1118 ## COG4974 Site-specific recombinase XerD 30 9 Op 7 . - CDS 27339 - 28220 454 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains - Prom 28250 - 28309 8.8 - Term 28269 - 28317 6.1 31 10 Op 1 12/0.000 - CDS 28336 - 30105 2613 ## COG0469 Pyruvate kinase 32 10 Op 2 3/0.000 - CDS 30143 - 31102 1271 ## COG0205 6-phosphofructokinase - Prom 31170 - 31229 5.4 33 10 Op 3 . - CDS 31241 - 34363 2724 ## COG0587 DNA polymerase III, alpha subunit - Prom 34396 - 34455 8.9 + Prom 34366 - 34425 8.9 34 11 Tu 1 . + CDS 34450 - 34773 327 ## LGAS_0879 hypothetical protein + Term 34788 - 34836 2.7 - Term 34838 - 34868 2.0 35 12 Tu 1 . - CDS 34877 - 35068 289 ## PROTEIN SUPPORTED gi|42519001|ref|NP_964931.1| 50S ribosomal protein L32 - Prom 35104 - 35163 6.2 - Term 35140 - 35180 2.5 36 13 Op 1 4/0.000 - CDS 35192 - 35986 925 ## COG0300 Short-chain dehydrogenases of various substrate specificities 37 13 Op 2 . - CDS 35991 - 36917 879 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 38 13 Op 3 . - CDS 36924 - 38846 1292 ## COG1835 Predicted acyltransferases 39 13 Op 4 . - CDS 38863 - 40146 1769 ## COG0536 Predicted GTPase - Prom 40173 - 40232 3.2 40 13 Op 5 . - CDS 40234 - 42051 1416 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 42110 - 42169 6.5 + Prom 42094 - 42153 13.0 41 14 Op 1 . + CDS 42178 - 43107 853 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 42 14 Op 2 . + CDS 43119 - 43340 107 ## - Term 43236 - 43290 5.4 43 15 Op 1 . - CDS 43294 - 43671 459 ## LJ1063 hypothetical protein 44 15 Op 2 . - CDS 43708 - 44022 468 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 45 15 Op 3 9/0.000 - CDS 44024 - 44905 1238 ## COG1760 L-serine deaminase 46 15 Op 4 . - CDS 44927 - 45601 808 ## COG1760 L-serine deaminase - Prom 45636 - 45695 6.1 47 16 Op 1 . - CDS 45792 - 46190 291 ## lhv_0917 hypothetical protein 48 16 Op 2 4/0.000 - CDS 46262 - 46849 727 ## COG0218 Predicted GTPase 49 16 Op 3 4/0.000 - CDS 46839 - 48128 273 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 - Prom 48165 - 48224 6.7 - Term 48185 - 48218 2.2 50 16 Op 4 . - CDS 48236 - 49564 1987 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 49607 - 49666 14.5 - Term 49639 - 49687 9.5 51 17 Tu 1 . - CDS 49690 - 50880 1374 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 50941 - 51000 6.7 52 18 Op 1 . - CDS 51050 - 51919 884 ## FI9785_1198 hypothetical protein 53 18 Op 2 2/0.143 - CDS 51888 - 53783 1929 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily - Prom 53847 - 53906 7.8 - Term 53909 - 53953 4.3 54 19 Tu 1 . - CDS 53970 - 54239 412 ## PROTEIN SUPPORTED gi|42518932|ref|NP_964862.1| 30S ribosomal protein S15P/S13E - Prom 54319 - 54378 6.6 + Prom 54190 - 54249 9.2 55 20 Tu 1 . + CDS 54423 - 54686 307 ## PROTEIN SUPPORTED gi|116629807|ref|YP_814979.1| 30S ribosomal protein S20 + Term 54694 - 54751 10.4 - Term 54630 - 54667 1.0 56 21 Op 1 4/0.000 - CDS 54734 - 55720 1040 ## COG1466 DNA polymerase III, delta subunit 57 21 Op 2 4/0.000 - CDS 55717 - 57996 1043 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 58 21 Op 3 . - CDS 57965 - 58597 587 ## COG1555 DNA uptake protein and related DNA-binding proteins 59 21 Op 4 . - CDS 58640 - 58894 149 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 60 21 Op 5 4/0.000 - CDS 58899 - 59672 647 ## COG3480 Predicted secreted protein containing a PDZ domain 61 21 Op 6 14/0.000 - CDS 59674 - 60171 295 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 62 21 Op 7 . - CDS 60158 - 60712 383 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 63 21 Op 8 . - CDS 60709 - 61041 311 ## FI9785_1208 hypothetical protein 64 21 Op 9 . - CDS 61019 - 62221 1259 ## COG0772 Bacterial cell division membrane protein - Prom 62274 - 62333 6.6 - Term 62298 - 62341 3.4 65 22 Tu 1 . - CDS 62365 - 64263 2488 ## COG1217 Predicted membrane GTPase involved in stress response + Prom 64348 - 64407 12.5 66 23 Tu 1 . + CDS 64459 - 65004 556 ## COG0242 N-formylmethionyl-tRNA deformylase + Term 65006 - 65044 8.6 + Prom 65024 - 65083 6.8 67 24 Op 1 7/0.000 + CDS 65141 - 65365 291 ## COG5503 Uncharacterized conserved small protein 68 24 Op 2 . + CDS 65476 - 67053 1271 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Term 67054 - 67106 9.4 - Term 67047 - 67086 2.1 69 25 Tu 1 . - CDS 67092 - 68996 1848 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member - Prom 69034 - 69093 2.8 70 26 Op 1 . - CDS 69110 - 69433 398 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 71 26 Op 2 . - CDS 69461 - 70093 544 ## LGAS_1187 TPR repeat-containing protein 72 26 Op 3 . - CDS 70093 - 70749 772 ## COG0406 Fructose-2,6-bisphosphatase 73 26 Op 4 . - CDS 70778 - 71905 1298 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 74 26 Op 5 . - CDS 71916 - 72251 370 ## LGAS_1190 hypothetical protein 75 26 Op 6 16/0.000 - CDS 72282 - 72659 429 ## COG0262 Dihydrofolate reductase - Prom 72735 - 72794 4.3 76 26 Op 7 . - CDS 72804 - 73793 965 ## COG0207 Thymidylate synthase 77 26 Op 8 7/0.000 - CDS 73824 - 74351 619 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 74377 - 74436 5.4 78 26 Op 9 . - CDS 74447 - 76732 2040 ## COG0608 Single-stranded DNA-specific exonuclease - Prom 76831 - 76890 2.9 79 27 Op 1 . - CDS 76901 - 77413 575 ## COG3764 Sortase (surface protein transpeptidase) 80 27 Op 2 . - CDS 77415 - 79253 2171 ## COG0481 Membrane GTPase LepA - Prom 79285 - 79344 13.5 - Term 79352 - 79400 10.2 81 28 Op 1 31/0.000 - CDS 79443 - 80576 1277 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Term 80589 - 80630 6.6 82 28 Op 2 29/0.000 - CDS 80645 - 82486 2469 ## COG0443 Molecular chaperone 83 28 Op 3 21/0.000 - CDS 82503 - 83051 599 ## COG0576 Molecular chaperone GrpE (heat shock protein) 84 28 Op 4 . - CDS 83063 - 84121 1219 ## COG1420 Transcriptional regulator of heat shock gene - Prom 84177 - 84236 7.8 - Term 84297 - 84349 3.2 85 29 Op 1 . - CDS 84380 - 85000 481 ## gi|309809324|ref|ZP_07703193.1| hypothetical protein HMPREF9215_0091 86 29 Op 2 . - CDS 84957 - 85124 215 ## gi|312875491|ref|ZP_07735494.1| hypothetical protein HMPREF9216_0290 - Prom 85152 - 85211 11.7 - Term 85318 - 85351 -0.9 87 30 Tu 1 . - CDS 85460 - 85630 180 ## 88 31 Tu 1 . - CDS 85714 - 86181 361 ## gi|309809284|ref|ZP_07703153.1| hypothetical protein HMPREF9215_0094 Predicted protein(s) >gi|308170353|gb|AEHR01000006.1| GENE 1 23 - 913 1061 296 aa, chain - ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 1 289 1 294 298 186 35.0 4e-47 MEYQLKNSFLTLTVSTLGAEIQSVVDNNSKCEYIWTAKKEVWPQHAPVLFPIVGRLKNDQ YTYKDKTYHLGQHGFAHKKEFELDQQDDTSITLLLKSDEETKKQYPFDFEFRVKYSLVNN LIKEDFIVTNTGSEEMIFGVGGHPGFNLPTNQGLKKEDYYFKFDPSIDHVRIPLEAPLLD WDNRSLVSTNSLFEINDQLFENDAWIFQLDNHPTKVSIKTDKSNYHINVHIDNAPYVGLW SQYPVTADYICIEPWWGIADTKDTNGKLEDKIGMNRVAAGQTWSNGFSMAFHDETK >gi|308170353|gb|AEHR01000006.1| GENE 2 930 - 2324 1226 464 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 4 464 9 466 466 476 54 1e-133 MVKTPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGV GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKI EATEHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDEDDEELDDQIIDKRA SVADKLKKGLLENHEVTLYVESATKANQMNDMIGQMGMDMSSLMGGLMPKKRVRRTLSVK DARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREGVQR DILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLRESD FVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRLATIL EKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL >gi|308170353|gb|AEHR01000006.1| GENE 3 2335 - 2859 827 174 aa, chain - ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 2 174 6 179 179 184 57.0 5e-47 MTTICAVRHKGKIAIAGDGQVTLGEKVIAKSTAKKVRRIYHNQVVVGFAGGVADAVSLQD MLEGKLETYSGDLRRSTVEMAQGWRKDPTLAKLQAMMIAFNDKDLLLISGNGEVLEPDED VVAIGSGGNYAQAAALAMIRHSSDMDACDIAKEAVLIAAGIDVFTDDKITSDEI >gi|308170353|gb|AEHR01000006.1| GENE 4 2863 - 3699 857 278 aa, chain - ## HITS:1 COG:BS_codV KEGG:ns NR:ns ## COG: BS_codV COG4974 # Protein_GI_number: 16078677 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 1 275 30 304 304 223 42.0 2e-58 MDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYLAQKKDKRSTQSRKISTLRSFYRFLN KRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVLKSISTTTPLGLRNMALLELFYATGM RVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFGEEAKTALNNYLVEARKKILLHKTDY GYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQEL LGHESISTTQIYTHVTKQHLCDIYHKYFPRDNKENEAK >gi|308170353|gb|AEHR01000006.1| GENE 5 3789 - 5102 1420 437 aa, chain - ## HITS:1 COG:lin1315 KEGG:ns NR:ns ## COG: lin1315 COG1206 # Protein_GI_number: 16800383 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Listeria innocua # 1 435 1 434 434 566 65.0 1e-161 MPEKVTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQ LSNAVGLLKEEMRQLDSLIMRVADETAVPAGGALAVDRDSFSKKVTQIINELPNVHVHNE EIKDIPKDGINIIATGPLTSDLLATKIKEFCGSESLHFFDAAAPIITAESIDYNIVYKKS RYDKGEAAYLNCPMDKEQFVNFYNNLITAETAELHEFEKNNVFEGCMPIEVMAKRGEKTM LFGPLKPVGLEDPKTGKLPYAVVQLRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLA NAVFVRYGKMHRNTYISSPEVLNSTYETKLCKNLFFAGQMTGVEGYVESAGSGLVAGINA SLRAIGESPIVFPKNTAIGSMANYITSTSAKNFQPMNASYSLMPQLEKKIRNKQERHLMQ SKIALDELNEFKNKVGL >gi|308170353|gb|AEHR01000006.1| GENE 6 5152 - 5895 817 247 aa, chain - ## HITS:1 COG:SP1263_2 KEGG:ns NR:ns ## COG: SP1263_2 COG0551 # Protein_GI_number: 15901123 # Func_class: L Replication, recombination and repair # Function: Zn-finger domain associated with topoisomerase type I # Organism: Streptococcus pneumoniae TIGR4 # 105 243 1 140 146 199 64.0 6e-51 MSTDQHFTQPPARYTEASLVHTLEENGVGRPSTYAPTIDTIQKRYYVKLEGRSIVPTELG EIVNKLIEKFFPDIVNVDFTAQLENDLDSVEVGKKDWVKIVDAYYQPFSEELAKADDQME KIQIKDEDAKFDCEVCGAPMVIKLGRYGKFYACSRFPDCRNTQAITKKVGVVCPKCGKGD IIEKKSKKNRKFYGCSNYPDCDFVSWDQPIARTCPNDGHFLVQKKTKKGLLVLCPNGDYR EDQEESN >gi|308170353|gb|AEHR01000006.1| GENE 7 5925 - 7238 1448 437 aa, chain - ## HITS:1 COG:SP1263_1 KEGG:ns NR:ns ## COG: SP1263_1 COG0550 # Protein_GI_number: 15901123 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Streptococcus pneumoniae TIGR4 # 9 437 15 438 553 516 62.0 1e-146 MPTAKVKKNLVIVESPHKAKTIEKYLGRNYHVIASKGHVRDLPKSQMGVDIDNDYEPKYI SIRGKGSTIKELKAEAKKAKNVYLASDPDREGEAIAWHISHILGLDPKDMNRVAFNEITK DAVKAAFKEPRAIDMNIVDAQQARRVLDRLVGYSISPILWSKVKKGLSAGRVQSIALKLV IDREKEILNFVPQEYWTISSTFKKAEQKSTFNGDFYGLAGKKIDLNNNDDVRKILAKIDK KQPFEVTQVIKKERKRQAAAPFTTSTMQQEANKRLGYRTHRTMRIAQSLYEGINLGKGSV GLITYMRTDSKRIANVAKQEAADFIKSEFGDAFAAHNPKNFKNDGDAQDAHEAIRPTSAF RTPESIKDYLTPEEYRLYNLIWSRFIASQMNAAIYDTVRADIVQNDVTFRTTGSKLKFAG FTKVYDSNSEKTKICPN >gi|308170353|gb|AEHR01000006.1| GENE 8 7308 - 8153 763 281 aa, chain - ## HITS:1 COG:BH2468 KEGG:ns NR:ns ## COG: BH2468 COG0758 # Protein_GI_number: 15615031 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Bacillus halodurans # 75 269 81 276 302 188 48.0 8e-48 MNIKELCLRLKLQKKIGYKNMYKILFQLSSEKEITYQLINELNIDFELRGLVLSAFDNEN YSKLIDKICSQCDVITIFDDIYPECLKEIYNPPLVLFARGNLDLLQRRITVIVGSRTPTK YSDQVLQRLIPNIIQDGWVIASGLAKGVDELAHRLTLANHGDTIAVIGNGLNYFYPHQNE GLQQEIFRKGLVLSEYLPDTPPLPFRFPERNRILAGLSENILVTEARKKSGSLITANLGL EANRNIFAVPGPINSNLSEGPNELIAAGAVPVIDYFLDDTI >gi|308170353|gb|AEHR01000006.1| GENE 9 8202 - 8954 697 250 aa, chain - ## HITS:1 COG:SP1156 KEGG:ns NR:ns ## COG: SP1156 COG0164 # Protein_GI_number: 15901021 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Streptococcus pneumoniae TIGR4 # 2 248 3 251 259 229 49.0 4e-60 MTIAEIKKLLSSGDVSTDLLITLENDSRQGVQRLVKSYKMQRAKKEKAFLEFETRFSYEK EFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNELFPMILD KAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDLPQLKLIR GDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALKQYGPTPIHR FSFEPVSSYR >gi|308170353|gb|AEHR01000006.1| GENE 10 8951 - 9790 1055 279 aa, chain - ## HITS:1 COG:SPy1161 KEGG:ns NR:ns ## COG: SPy1161 COG1161 # Protein_GI_number: 15675137 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 1 277 1 274 282 258 43.0 7e-69 MANIQWYPGHMNKAKNQLEDKLDLIDVIIEVLDARLPMSSKNPMISKLIANKAHIIILNK ADLADAIKTKAWVKFFQKQGILVLPMDAQHSNNMSGLIKLIKIATKDKVDKIIAKGAKEP VIKVAIAGIPNCGKSTIINRLVGRNATIVGDKPGVTRGQNWLKTDTNIQILDTPGILWPK FDDRNIGLKLAACGAIKDSVFHADDVSIFVLKYLREQYLNLLVDFCKTSAEKIEKINDID LLLAMTQLFGMRDDYERFSIFFLQRLRKGKIGRITFDLP >gi|308170353|gb|AEHR01000006.1| GENE 11 10004 - 11386 1216 460 aa, chain - ## HITS:1 COG:lin1965 KEGG:ns NR:ns ## COG: lin1965 COG0793 # Protein_GI_number: 16801031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Listeria innocua # 8 429 39 465 496 236 34.0 8e-62 MKKKLSEYKYLFIVGLIGIFLGCISTYSAMTIYQQKSPLGKINNFYQKLKKTYYCDISDK RLISGAIDGMLNSLSDPYSQKLEGNHLKQINGVLTGNSFGGIGVEMQVFHNKIVICSVLR DTPAFKAHIKVNDELIGVNGKSVDARNFMELSKMIRGKIGTKVTLTLIRNNKKIDVTVVR ANIKQSTVSVRQKGSATIIAISQFDVNTAKDLREALKNAKVLHSKKLIIDLRNNPGGIME QAMTCAAYFVPYGKIIMKYEGRNEHQIIRSNKKLSNNFRTKLKPIIIINQHTASASEIFT AALVDNQCAVTVGQHSFGKGTVQQVGVDDNVEYKFTIAKWLTPRGKWINKRGIKPTYETP VSAIENLPKFQTNTLLKYNMMGLDIAILQKYLMALGYLSNNLTGVYDNATLNSVKMFQKD NNLKVTGIVNKDIRYALYVAAYNKFYNDDVTVSKALSIDF >gi|308170353|gb|AEHR01000006.1| GENE 12 11391 - 11624 234 77 aa, chain - ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 72 4 68 77 65 55.0 3e-11 MCMPYRESFYRFLMTLRDHNSTDEVVQFANNAEFDSSFPRQEQDYEKLSEYLEFNATYLV SMTIFDRAYQMYQEKMM >gi|308170353|gb|AEHR01000006.1| GENE 13 11627 - 12478 824 283 aa, chain - ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 279 1 274 279 189 40.0 8e-48 MKKIKIVTDSSAQLTIDEINKYDIHIVPLSITFSDKTYTDGVDISREDFVKKMLSADELP KTSQPSIGLFEDVFKDLASDGSHILGIFLTQSLSGTISAAKQAADLLNLGDNITIIDSGL TDRALGLQVLAAAKDLIAGKTLQEIKLHIEAIKKNQHLEMMVSNLDNLIKGGRLGSISGK IATLLNIKLVLQMTDGKLSVYKKGRGKKFFKDFEERVLADIEANKNQISEVGISYVDTPD IAAEIAEKIHLINSDINVLSNITSPIISSHAGSGAIAIIYYTE >gi|308170353|gb|AEHR01000006.1| GENE 14 12604 - 13269 655 221 aa, chain + ## HITS:1 COG:L97827 KEGG:ns NR:ns ## COG: L97827 COG1272 # Protein_GI_number: 15672479 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Lactococcus lactis # 14 221 7 216 217 164 47.0 1e-40 MTFKKLWEEPKNVSTKYFILNNVFSAITHCIGFGLAIAGLVILIIRSASTGNAIRVVSFT IFGTSLVILYLFSTLYHSLVFTKAKRIFQIFDHSSIFILIAGSYTPYALVMIGGFKGWLL FGIIYTLAIIGILFCIFNKGKRPLGEIILYISMGWTALTFGNTIFPLLGKSGFLLLLSGG LAYTIGALLYTMKRIPYIHVIWHLFVILGSALIYFSILLYV >gi|308170353|gb|AEHR01000006.1| GENE 15 13366 - 14742 1416 458 aa, chain - ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 67 458 1 393 394 314 43.0 2e-85 MVLVFKIDLIMDFEKFVFELFCKKFMNIYHFLSKTNSYYLILPNLALNLVKFNSDYERKS IMNITELPNVFKAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQ IFEKTIDTGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFT INALAMDAEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGFELDL DTKKAIFDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQL SVFSKLNFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLLSY RIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNYLLKK GIPAGPRIGELLIEIKKAILERKLENNISAIDVFLNNK >gi|308170353|gb|AEHR01000006.1| GENE 16 14666 - 15610 633 314 aa, chain + ## HITS:1 COG:lin2023 KEGG:ns NR:ns ## COG: lin2023 COG1284 # Protein_GI_number: 16801089 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 20 309 1 288 288 241 46.0 1e-63 MNFLQNNSKTNFSKSIIKSILNTKTIKDLFFIALGASIYAFSLDAINIKNQLADGGISGV TLLLRYWFKINPGISTLVLNIPLIIIGYKYMGRRMLILTIWGTSCLSFFLNFWLHTPFIH QINLDHDLFLAGLLTGLLSGLGIGIVFKFGGTTGGTDIIARILELKLGIPIGKTLLGLDV LVLGISLSYLDTKHMLYTLVGSYFLAKIADYVQEGSYAAKGVIIISDKYLNIAKMINLNL DRGYTYLLAEGGYQNDTKKIIYCVVSPRELSNLKSIVLNEDKKAFVSIIDVHETLGEGFT YLRKKNNIFENLKK >gi|308170353|gb|AEHR01000006.1| GENE 17 15676 - 17094 1059 472 aa, chain - ## HITS:1 COG:SPy0902 KEGG:ns NR:ns ## COG: SPy0902 COG0154 # Protein_GI_number: 15674924 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Streptococcus pyogenes M1 GAS # 4 466 27 481 484 294 41.0 3e-79 MEYAIDNAIKLQPILNCITITWFDKALCQAKKMDRQLQYLTEDERQKLPPFYGVPTLLKD LTEFWEGTVTSNGCALMRDKVSSRTDAYVQKVLEMGFLPIGRSNVSEFGLKTVADSNAFG AVCLPQDITRNPGGSSGGAAAAVKAGIVPIAMGSDAGGSIRVPAGYTGLIGLKPSRGRIA SGPGIYRGFNSLSTQFALAKSVRDVFTMLKNASVYSPYAMCSLPTIKEEKIQSLTKPLKI AYSVQSLSDEPTSSDAIKAIKSIVSYLKAMGHEVIEDAPAIDIVKLFHFYYTTCLVETGR NLANFKDQSDRVLCKALGDLAWLSYKIGPQISAYEYSGMLKDQDILIEQNAKFYQNYDLF LTPTTISVAKKQTECALPQTLKNLLSNLQSMSIREQRDVAIQAFDNTYRWTPFTQLMNLT GDPAISLPVYETINGLPIGVQISSLKGNEYRLLQVAKDFEEHGLLKTHIVSL >gi|308170353|gb|AEHR01000006.1| GENE 18 17209 - 18456 1084 415 aa, chain - ## HITS:1 COG:lin2036 KEGG:ns NR:ns ## COG: lin2036 COG0457 # Protein_GI_number: 16801102 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Listeria innocua # 1 412 1 416 417 184 28.0 3e-46 MSYSEKLLDEIQKHNFSNNNILLKKALQNDDNNVLIDLAENLLGFGFTDLAKTVYMHLIK TFPDEGVFKVYLAEILLNDGDEDQGLQLLYDIKPNSSGYIESLLAQADYYQTNGCFDVAE DKLKQALALRKDEPAIIFGCAEINYLKGSYDRAMQYYQELLDQGNKTFGEVAIFQRIMSC LAKMGKYEEAAEIIQNNMDSLLNIDSQYDAGLIMMATSNWKQAIKLFQAVIDSQPDYVNV YPNLAKAYFNIGELNKALDVANAGISYNEYDISLYRIGSKAALSLKDYDQAQQILEKGVD ILSNNDDLKLDLSNLYIITNQDKNNILLLSHDDNQHDPQLIWNLAISYQRTENYQKAKEQ FLLAYPNFKNNADFLRQMALFFHEIGDTHNFKLVLKKYIEMVPEDIEMQDLLTEL >gi|308170353|gb|AEHR01000006.1| GENE 19 18546 - 18821 457 91 aa, chain - ## HITS:1 COG:SA1305 KEGG:ns NR:ns ## COG: SA1305 COG0776 # Protein_GI_number: 15927054 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Staphylococcus aureus N315 # 3 91 2 90 90 104 71.0 3e-23 MANKADLVSLVASNTKLSKKEAADAVDLVFNFVKETLSKDEKVQLIGFGTFEVRERAARK GRNPQTGAEIEIPASKVPAFKPGKALKEAVK >gi|308170353|gb|AEHR01000006.1| GENE 20 18967 - 20274 1645 435 aa, chain - ## HITS:1 COG:lin2051 KEGG:ns NR:ns ## COG: lin2051 COG1160 # Protein_GI_number: 16801117 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 1 435 1 436 436 541 61.0 1e-153 MSLPVVALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGG ITFEDNVIEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINK ADNPEQRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKFDGNNTTDDDNNIRFSII GRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGIRRKGKVYE KVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAVNKWDVPYK TTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRRIQSSVLND LLLDATRITPTPLVNGKRLRIYYMTQVAVVPPTFVVFVNDPELLHFSYKRFLINQMRQNF NFEGTPIKILARKRK >gi|308170353|gb|AEHR01000006.1| GENE 21 20344 - 21531 1710 395 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227520801|ref|ZP_03950850.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03] # 1 395 1 396 398 663 84 0.0 MSDNSNQFLDALKQMQGVEVGSIVEVEVLNVEDGQLTVGVVNEGVEGIIIKREFTADRNA NLQSLVKPGDKFKALVLRKAGGDKENGEFFFSVTRLKEREAYSELEKVYAEGNTVEGVVT GAVRGGLLVDVGTRGFLPASLISNRYVSDLKPYIGKKMNLKITEIDPNKNRLILSRKDLI EEEREEAFESVANQLVVGDTIEGKVSRLTGFGAFINVGGVDGLVHISEISYKHIDKPSDV LKVGQEVKVKVIGIDDDRRRISLSIKQTLPSPFEEATSELHEGDVIDGEVKSLTSFGAFI EVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSDKRISLSIKQTESDNKS NESRPRHEDNVAKKYMSDGDNGFALGDLIGDQLKD >gi|308170353|gb|AEHR01000006.1| GENE 22 21594 - 22256 221 220 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 3 213 37 281 863 89 27 4e-17 MQVAIDGPASAGKSTVAKIIAKNMGYIYLDTGAMYRACTLVAKQNHLAYDDQSGILKALN NNIISFKNIDDDQRVYINDKDVSFDIRTPEITANVSQVSALSEIRKKMVEIQRKIAGENN IIMDGRDIGTTVLPDADVKIFLIASVASRAKRRYLDFKEKGINQNLTDIEKDIADRDYKD MHRQISPLRKAEDAYQVDTTDMSIDQVVNKLTQIIKKIKK >gi|308170353|gb|AEHR01000006.1| GENE 23 22344 - 22937 385 197 aa, chain - ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 13 196 6 185 203 89 32.0 5e-18 MRRYQKVNNINELKMLLLSMMLGVFSFIVMQISIPIIPGASFLKLDCSDIIIMISFFVFN PIVGSTVAIVRGILCLIIGGFNLIALLGQIAALVASLCYIFPIYFWSKNKMYMLKYKIIG ILLGTCGLTISMSIINYYVLLPLYMQLVNFKINDLMAYILFLIAPFNLIKGIINGILFLI LSNKIIPTLQKFIEKNC >gi|308170353|gb|AEHR01000006.1| GENE 24 23206 - 23985 837 259 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809260|ref|ZP_07703129.1| ## NR: gi|309809260|ref|ZP_07703129.1| hypothetical protein HMPREF9215_0032 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9215_0032 [Lactobacillus iners SPIN 2503V10-D] # 1 246 1 246 259 191 100.0 4e-47 MNKDSEEPIKHYERPSTPRGSVQKTSSAGNPKRRIRSVPSSTVAKRKSKRRSILVLATLV LLFLVCVPLVIAHFTSRSDNDSQKSELVHDRDSKDSHKKKKHEKKSDDDDADKDDSSSDD SSNEKSNDSSTTTASNNTQNSSHNNNSSTASTKTTHVNQHKGVSAKASHSKAATSKAKVE HKVYKGSEKGKENGSKKDEKPKSNEKADKGSEKGKENGSKKDDKAKDDKKSNANDKKSDS AKSSNTEKESKEKSSENKK >gi|308170353|gb|AEHR01000006.1| GENE 25 24052 - 24771 825 239 aa, chain - ## HITS:1 COG:lin2063 KEGG:ns NR:ns ## COG: lin2063 COG1187 # Protein_GI_number: 16801129 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 4 235 3 234 244 265 59.0 5e-71 MKLRLQKVIAEAGIASRRKAEILITSGQVTVNGNLVTTLGTKVDDNDKIEVNGVPIHKEQ LHTYLLYKPRNVVSTVSDNKGRKTVTDFFKDLPYRLYPVGRLDYDTSGLLLMTNDGELAN RLMHPKNEIEKVYVAKIRGFLTASEIYDLKHGVTIDGRKTAPAKVKIIKTDKNRNIQLVQ LTIHEGHYHQVKNMFKAVNHLVEKLSRERYAFLTLKSLISGEYRELTHEEINKLKHSEN >gi|308170353|gb|AEHR01000006.1| GENE 26 24790 - 25356 609 188 aa, chain - ## HITS:1 COG:SP1875 KEGG:ns NR:ns ## COG: SP1875 COG1386 # Protein_GI_number: 15901703 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pneumoniae TIGR4 # 1 182 1 179 189 152 45.0 3e-37 MSKEAQLEAILYLAGDEGITEDQLSQLLDIPALQLHEIIKKTKDKLEDDHDCGLSILRVN DVIKLVTKNSCSDIVGKYFQKDLNKNLSQSALEVLSIVAYRQPITRIEIDDIRGVNSAGA IQTLIWRGLVEISGKKEVAGHPNLYVTTEYFLQYFGYQSLDDLPLIESFSDSVIDSQQVE LFNNSDDI >gi|308170353|gb|AEHR01000006.1| GENE 27 25358 - 26089 690 243 aa, chain - ## HITS:1 COG:lin2065 KEGG:ns NR:ns ## COG: lin2065 COG1354 # Protein_GI_number: 16801131 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 239 4 242 249 129 36.0 4e-30 MIDDTNLNLELPNFSGPLDLLLHLIKSQKIDIYDIPIAKITSQYLAYLSKWQTLDLKIAG EYFVMASSLLKIKSQYLLPKNDFDNEVIEDDDPREELVEQLVQYSIFKKISEFLDERQKS APITVAKEPSVASQKKVSLLPFGEISSKQLAHAFFVVLQRFQHKNNVGEVNIKEVSIEDM VLWLSSKLHSAHKLSFFELSAELTTVDELISLFLAILELCRNQKIKVYQESDFEDLVIES LVA >gi|308170353|gb|AEHR01000006.1| GENE 28 26086 - 26445 407 119 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0885 NR:ns ## KEGG: LGAS_0885 # Name: not_defined # Def: riboflavin biosynthesis acetyltransferase RibT # Organism: L.gasseri # Pathway: not_defined # 1 119 1 118 120 90 40.0 1e-17 MLYKYKNNYEKIVMGYLSYFDEFKILKNLLAEIKLYNESDIYTVYLYRSKPTVDFQGVVC VQVEAEFVVIRYVSINPSYDREKIIERIMKELHELYQNRLLCTMPDYAYLMKYIEESDT >gi|308170353|gb|AEHR01000006.1| GENE 29 26456 - 27346 1118 296 aa, chain - ## HITS:1 COG:BS_ripX KEGG:ns NR:ns ## COG: BS_ripX COG4974 # Protein_GI_number: 16079408 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 1 295 1 295 296 264 45.0 1e-70 MNDSLEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQER DKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLIN MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISN VAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVT PHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI >gi|308170353|gb|AEHR01000006.1| GENE 30 27339 - 28220 454 293 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 1 274 1 270 285 179 38 4e-44 MLGKIVSGKVIDKNTNAFFVQVSGVTFELNNVELTQEEPLKLGDIVKGFVYENKNHKHVM TQFYPFAQEDQYGWSTVTEVRKDLGVFLDIGLKDKDVALSLDDLPLDKSRWPKKGDRLLV RLETDHKDRIWAKLADGDVFTQLAANYPNNLMNKELTGTVYLTYEIGAFLITTDFYLAFI HESQSYRPLRLGEQVTGRVIGNSRYGRLNMSVLPRNYEEIDDDAQMILVSLNRESTKSLP FCDRSDANLIKQHFGISKSAFKRALGHLLKAKLITVDNDAGVISLFDKVENDE >gi|308170353|gb|AEHR01000006.1| GENE 31 28336 - 30105 2613 589 aa, chain - ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 479 1 475 475 530 59.0 1e-150 MKKTKIVSTLGPASNDIETITKLAEAGANIFRFNFSHGDHPEHAERMRMVREIEKKTGLL LGVLLDTKGAEIRTTDQEGGKFIINTGDKIRISMDATKVGNKDKIHVTYPGLYSDTKVGG HVLIDDGLVDLLILEKDEANQELVCEAQNTGKIGSKKGVNAPGVEIRLPGITEKDTDDIK FGLTQGINFIAASFVRKAQDVLDIRQLLEEGHCEYVKIFPKIESQEGIDNIDEILKVSDG LMIARGDMGVEIPFINVPFVQKELIKKCNRLGKPVITATQMLDSMQEHPRPTRAEVTDVA NAVLDGTDATMLSGESANGLYPVNSVKAMADIDMRTEKQLAERNSLALQRFEEYQGSNVT EAIGESVVRTAEELGVKTIIAATESGYTARMISKYRPNADIIAMTFDEKTQHSLGVVWGV KPMLVEKPKTTEEMFDKAAELAKESGLAKDGDLVIIVAGVPLGQTGTTNLMKLQLIGTQL VKGLGVGEQSVIGSAVVVDSAEDANNKVQEGDILVAKTTNKDYLPAIKKASALVVEASGL TSHAAVVGLSLGIPVVVGATDAVSKVKDGSKITVDARRGAVYLGEASNI >gi|308170353|gb|AEHR01000006.1| GENE 32 30143 - 31102 1271 319 aa, chain - ## HITS:1 COG:SP0896 KEGG:ns NR:ns ## COG: SP0896 COG0205 # Protein_GI_number: 15900779 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Streptococcus pneumoniae TIGR4 # 1 318 1 335 335 377 60.0 1e-104 MKRIGILTSGGDAPGMNAAVRAVTRTALANGVEVFGIRYGYAGLVAGDIFQMTSATVADK IERGGTFLYSARFPEFAQKEVQLKGIEQLKKHGIEALVVIGGDGSYHGALRLTEHGYNAI GLPGSIDNDIPYTDYTIGFDTACNTAMEAIDKIRDTATSHQRVFVVNVMGRDCGDIALHV GVATGADAIVVPEEEYDIKEIAETLKQGFANGKKHGLVVVAEGVMNAEDFKNELLKYGDF DARANVLAHMQRGGNPTVRDRVLSSKMGAYAVKLLLDGKGGLAVGIENNKLIAHSILDLF DAKHQGDYSLYSLNKDMAK >gi|308170353|gb|AEHR01000006.1| GENE 33 31241 - 34363 2724 1040 aa, chain - ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 1019 1 1018 1108 655 37.0 0 MEIAGLQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIK PLLGMQLRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVTLNKLQ KYLGNLHIITTANQHSELRDLFYHNFDLMPDYIRKLVKILPQSSNLYLGVFADKSESNYI NSVKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKHVGNHYLK TKDKLCESYNSLGILEALRNTKQVSDDSNIEIKFTMPQLPKFIQHKFDTSYEFLHHLAMT GLQAKFNKHDIPSKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSIGILTGPGRGSAA GSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNRRNEVVLYMFHKYGMDH VAQILSFSTFAAKQVLHDVGNAFSFNKITIDSWLKAIPKSKSKITLSDAYKLSKDFRMLV NATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSLGIPVTQQTKKYV EALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDPATIKLFQKGKTDDIFQF ESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKNKEENVVYPDPVLINLLK PTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSIEMKKIGVDFVNRAVQQGHSA AAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVALLNSNIYDKQKVT KYIMDLKLDNIKITLPDINYSKRNFYISDKGEIVTGLNSILGLRMDFVEQIMNLQRPIKS LTDFLWKIDTKYLLPDMIGNLIKSGAFDKLHKNRSALLASYKDLLVCIKMSGGNNVLFQA LEPKELDIKMPSNAQKEEWETSVLGFSPQIDPILAAQIYAKKYGFKPFSDFTFYDEGVSV GKMMDIKVITTKNNKKMAFAKFNDLNETVDFVIFPAVYESIKSILSVGKVYLLKIETQTD KFNANKFKFILLSVKQIDLK >gi|308170353|gb|AEHR01000006.1| GENE 34 34450 - 34773 327 107 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0879 NR:ns ## KEGG: LGAS_0879 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 14 91 14 93 107 74 52.0 1e-12 MRSLKQNSHFTCINLKDIVNLFLIKNIIFVKIRMEEGIFMRYIITTVWAVIFVEIIGFIG SKLTQMAFNPCESALIGAAFGLLFTAIIPTVAIIKKNDSKNASDVVK >gi|308170353|gb|AEHR01000006.1| GENE 35 34877 - 35068 289 63 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519001|ref|NP_964931.1| 50S ribosomal protein L32 [Lactobacillus johnsonii NCC 533] # 1 63 1 63 63 115 84 6e-25 MAVPARKTSKQKKRSRRGHIKLSVPAMHYDATTGEYRLGHRVSPKGFYKGKQVLNETKKE DNE >gi|308170353|gb|AEHR01000006.1| GENE 36 35192 - 35986 925 264 aa, chain - ## HITS:1 COG:lin2083 KEGG:ns NR:ns ## COG: lin2083 COG0300 # Protein_GI_number: 16801149 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Listeria innocua # 1 252 1 251 263 201 43.0 8e-52 MGKTLDNKVVAITGASSGIGKSIALECAKNGATLILMSRSIEKLNSVAKAVQSLSQAPVY VYATDVRKVDQIDMTVDRIKHIVGRVDYLVNAAGFGIFEDFMHMDINTCEDMFQTNVIGL MYLTRLLAGMMIDQRNGQVINFGSLAGKVPTVKSAVYSATKAAVIQFSNVLRLELKPFNV KVLTVNCGPVKTNFFNIADKSGNYLSNVDRFMLNSDYVAKRVVKLFGCSVRELNLPFSLA ALARLYQLCPTLGDWASIKFASKK >gi|308170353|gb|AEHR01000006.1| GENE 37 35991 - 36917 879 308 aa, chain - ## HITS:1 COG:L18686 KEGG:ns NR:ns ## COG: L18686 COG1234 # Protein_GI_number: 15672612 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Lactococcus lactis # 1 305 1 305 307 324 55.0 1e-88 MEIQFLGTGAGQPSKGRNVSSTALKLLDELNEIWLFDVGEATQHQILETNIKPRKITKIF ISHNHGDHIFGLPGLLSSRSFQGDSGGLTIYGPAGIEQFVQISLKVSKTKITYPIKYVIL KDDGIIFEDKQFAVFTAKLDHRIESYGFRVVEKPRPGELQMDKLKQYNLPNGPILGRLKA GETVEYNGHVLNGKDFLGKPRLGRIVSIIYDTRPTNVIGQLAEDADVLIHESTFSGIDSK MAHRYYHSTCVDAATVALQHNVRRLFLTHISARYIGKNSRILEKEAQKIFSNTKLANDFD SYEIKARD >gi|308170353|gb|AEHR01000006.1| GENE 38 36924 - 38846 1292 640 aa, chain - ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 6 634 3 600 605 355 36.0 2e-97 MKNKNRFITGYSGLRSLAVIGVILYHLNPNVFIGGYLGVLIFFVLSGYLVTDHMLFSYQT YGRYSNRLFYLKRIKKLYPQLISVLWISGAYILIFQRDILSKFNEIVLANLFNVYNIWQI FNGQSYFERFASNESPFVHLWTMSILGQFYLLWPIIMYILVYKLRTKKELFITISVLTIL SAMEMALLYKPGVDTSRIYYGTDTRFFALGIGALLAIVCPTNRLRIGIKKNNTILLDSLG AVSFIGMFILATNQCMNPMQAFPYMGGMFIFSILTAIMVAIIANPHSHWNLVLTNPIFNW IGSRSYEIYLYQFPIMIFFESQAKNLAYNVFFYRVSEIILILLISELSYRLIEKPFGSLK WNQVHDFTRKIFTINKRYLSQKLVTMVGLIVFVLGTIAIFTAPTVKAKNADNSPLARQIK KNRREQLEDNKKIIAKAKSNKVKLAGKEKIVNWAKRRMKANIVNKDFERYGISQLDLQLA QKLCVTAIGDSVMAGSSQNLKKMIPSSLVDATVSRQLVPTINLFEKYKQNGALYPNVLIG LGTNGPFKMSDVDNLMRILGDKRRVFWVNVYVPSRSWQQPVNQLLYQAEKKYKNLYIINW NGFAKNHSKLLYADHTHPNVEGSKYYSVMITKYLVEHGKF >gi|308170353|gb|AEHR01000006.1| GENE 39 38863 - 40146 1769 427 aa, chain - ## HITS:1 COG:lin1572 KEGG:ns NR:ns ## COG: lin1572 COG0536 # Protein_GI_number: 16800640 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 1 427 1 429 429 418 53.0 1e-116 MFVDQTKIEVQAGNGGDGAVAFRHEKYAPLGGPAGGDGGRGGSIYLVADSGLRTLMDFRF RRKFKAENGENGRIKSQYGRGAKDVFLKVPMGTAVYDFYTNELLGDLVGNGQKLRVACGG RGGRGNIHFATSTRTAPEIAENGEPGEFRTLRLELKVLADVGLVGFPSVGKSTLLSVVTK AKPKIAAYEFTTLTPNLGMVVLDDGRDFSMADLPGLIKGASQGVGLGIQFLRHVERTKVI LHLISMDPNNGRDAYEDYLTIRQELAGYTNDLTKKTEIVVASQMDIPGSEEKLQELKKKL NDKIIYPISSITHKGVRDLMIKAADIVYAANDQAETAQVVADKGEQEYVYKKLDDSFVVE KVDEHYFVISGDKLERLVQRINLDHTDGVMMLARKLKRMGIDDALREKGAQNGDEVTIGN FTFEFVE >gi|308170353|gb|AEHR01000006.1| GENE 40 40234 - 42051 1416 605 aa, chain - ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 1 596 1 586 603 605 50.0 1e-172 MANQNIENKLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRRAELVRD INDFEIIVVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITNEKDPEVKLTSIIK KDKGYYFGPYPNVYAAQATLKFIQKMWPLRRCSGKLGRPCLYYNMGQCLGSCFKEVSSDK YDHQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIML HDKLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNA KNRLLPNEILVPKGVNASSLAAVLKVRVKTPSRGQKKALLDMAYENSKIKLDEKIRLLEL NNLKTKGAQEEIFNALGLPYGSRIESFDHSHIQGTDPVSALVVFIDGMPAKHEYRKFKLK GEIEHQNGADEVKNTREVVRRRYSRMLKEHLVLPNLILMDGGKIQVDACLDVLRNELNVN IPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQAFYLITRIQDEVHRFAITFHRN LHNKNSLASKLDEIKGIGPRSRNKLLKNFGSLKKIREASIEDLKGIGLTLTQAQSVKLVL ENSQN >gi|308170353|gb|AEHR01000006.1| GENE 41 42178 - 43107 853 309 aa, chain + ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 2 308 3 311 313 244 40.0 1e-64 MKNIYFNHDGNIDDLVSLLILLQAPDIKLIGVSAIDADGYIEPSVDACRKMIDLFNLRND NLEVAKSTSRAVHQFPNEWRMATYSFNYFPMLNESGTIKTPIAKLPAHLDMVDKIKKADD MVDLVMTGPITDLARALKADPSIQEKINKVYWMGGSLNGHGNVMSVDADGTQEWNAFWDS QSVATVLESDLNIQMVGLESTEELPLTDELRMHWAKMRKFPAIDLIGLGYSLIVSIPGAE LYLWDVLTTMSALYPEVVTSSIEAKAKIITSGLADGRMYTADDGKKLTLVTSANKELFFQ KMDEILKRS >gi|308170353|gb|AEHR01000006.1| GENE 42 43119 - 43340 107 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLTMKSNNELEKLFNKFAILPDDKDKKKIAKIKIIRNNCYHNLSKKGCSLCWHPFFILT SNMIKLLAIVLID >gi|308170353|gb|AEHR01000006.1| GENE 43 43294 - 43671 459 125 aa, chain - ## HITS:1 COG:no KEGG:LJ1063 NR:ns ## KEGG: LJ1063 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 2 124 3 124 126 109 48.0 3e-23 MDNELNEIKAQSVAWLKNNLNFYRMDSQTIEVETPLIDSFGQNIYCFIIKKGEYYLISDG GWFLFKLDPDMSDSDFYNQAVDIIIGTGFEIDEETGEFFMEVSIDELPLALNQLAQLQVA LSYLK >gi|308170353|gb|AEHR01000006.1| GENE 44 43708 - 44022 468 104 aa, chain - ## HITS:1 COG:lin2362 KEGG:ns NR:ns ## COG: lin2362 COG2151 # Protein_GI_number: 16801425 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Listeria innocua # 7 103 5 101 102 112 55.0 2e-25 MRDINIIKDEIVAQLAKVIDPELNIDIVNLGLVYAIDLDEDGICLVQMMLTTMGCPLADV LAKMVIKQLKNIPEIKNVDVRFIWEPAWTPDRLSREAKMILGVH >gi|308170353|gb|AEHR01000006.1| GENE 45 44024 - 44905 1238 293 aa, chain - ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 290 1 290 299 295 59.0 9e-80 MYDSISEIVANSLSTKKPISELIIEQECTLSGLTRDAVFEKMKCNLEVMLASVERGIQGQ GVFSKTGLTGGEAVKVKKYRKLNKSLSGDDMMIAVEAAMATNEVNAAMGVVCATPTAGSS GTLPGVLYLLKKKLNLNQEQMLRFLFTAGGLGLVIANHSGIAGATGGCQAEVGSASAMGA AAAVEVAGGSAEQSAQALAIAISNLLGLVCDPIAGLVEVPCVKRNAIGTTNALISADLAL AGCTSLIPPDECIQAMSNVGKLMPEELRETGLGGLASTATGQAIKAKIFGKDV >gi|308170353|gb|AEHR01000006.1| GENE 46 44927 - 45601 808 224 aa, chain - ## HITS:1 COG:BH2497 KEGG:ns NR:ns ## COG: BH2497 COG1760 # Protein_GI_number: 15615060 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus halodurans # 8 160 2 150 220 153 47.0 2e-37 MNDSVNQKYRSVFDIIGPIMIGPSSSHTAGAVAIGQAGNKLFGGIPKKVTVYYYGSFAQT HRGHGTDYAIAAGIMGLAADDYRVPNAINLARKRGIDIRFVEEDGNSPIGHPNTALLDLK TDDHRVKLIGCSIGGGTIEIRGIEISGIKMDIAGPLPIIIYKIPSNKLYCATELMNYLNK VAPYNKQQSFNGTGFVLYEFDIINYISPQIVNSLHKKYPGIICL >gi|308170353|gb|AEHR01000006.1| GENE 47 45792 - 46190 291 132 aa, chain - ## HITS:1 COG:no KEGG:lhv_0917 NR:ns ## KEGG: lhv_0917 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 13 127 12 126 171 73 43.0 3e-12 MKIFNIILGAILIIIFLVSLFRNKNHFIFLKALFLFLALIIGSTINFIVFLLLEYNFLNI DNGLKAGNLFILLGLMIIMSGLILYLYLLLLNWIFPLNSTILSIIEYYIQWTLIYVTIYQ VIFENLKKSQRY >gi|308170353|gb|AEHR01000006.1| GENE 48 46262 - 46849 727 195 aa, chain - ## HITS:1 COG:BS_ysxC KEGG:ns NR:ns ## COG: BS_ysxC COG0218 # Protein_GI_number: 16079871 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus subtilis # 1 194 1 193 195 199 52.0 2e-51 MKVNNSKFVISAVSDKQYPQDDLPEIALSGRSNVGKSSLINAVLNRRNLARTSQQPGKTQ TLNFYLVNTDLYFVDVPGYGYAKVSKEQRQKFGEMIQDYLETRADLKGLVLLVDARHDPT VDDINMFNYALCLNIPILVVATKIDKLKKSAIGQLKSKIGLSLDLTQSQVTFLPFSSETK INIDKFWQWIENSIK >gi|308170353|gb|AEHR01000006.1| GENE 49 46839 - 48128 273 429 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 157 407 258 456 466 109 30 4e-23 MSTNRRGDNEEIRCSFCGKLQSQVSKIIAGQDVYICNECIDISKKLVDEELKLDSVNEIK DIPKPIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGP TGSGKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDINRAQRGI IYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKIDT TNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIPEF IGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEFSSDALNAIATMALN KNMGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESVITKASDPIIVFDDRQTNNDLET DEGELIDEG >gi|308170353|gb|AEHR01000006.1| GENE 50 48236 - 49564 1987 442 aa, chain - ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 424 427 394 54.0 1e-109 MSAKWEKTGKTTGELTFEISTEEISKGLDIAFKRVKKNLRVPGFRKGHVSRVVFDQFYGE EALYEDAVNAVLPVAYANAIAESKAEVVGQPKIMPVSMEKGKAWTFKAIVSTKPEVKLGD YKGVEVPKQNKRVLVKDVDAELKKRQEQNAELVLKDGKSAEGDTVTIDYEGTVDGTKFEG GSAKNYSLELGSKTFIPGFEDQLLNHVAGDEVDVVVTFPEDYSAKDLAGKEAHFATKIHE VKSKHLPKIDDEFAKDIDDSVESLDELKEKIKADLKKQKEEAAEDAIQEAAVKEAVNNAS VDEIPEAMINEDVDNQLKQYLGGMQRQGIDPKTYFKLTGTTEEQLRQQLATDAPERVKTN LVLEAIVSAENIEVTAEEINQEIKNLATDYNMDEKVVRRTLSDDMLKHDISIRKAIKLVV DNAKEVAKKSSTKTATSEDSDK >gi|308170353|gb|AEHR01000006.1| GENE 51 49690 - 50880 1374 396 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 4 396 3 407 407 533 65 1e-151 MAEKEHYVRTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGLAEAKDYAGIDAAPEEKER GITINTAHVEYETEKRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREH ILLARQVGVNYIVVFLNKVDLVDDPELIDLVEMEVRDLLSEYGYPGDDVPVIRGSALKAL QGDPEQEAVIKKLMDTVDEYIPTPVRDTDKPFLMPVEDVFTITGRGTVASGRIDRGTVKI GDEVEIVGLTDKVEKSTVTGLEMFRKTLDLGEAGDNVGVLLRGIDRDQIERGQVLAKPGS IQTHKQFKGQVYILNKDEGGRHTPFFSDYRPQFYFHTTDVTGKIELPEGTEMVMPGDNVE FTVELIKPVAIEKGTKFTIREGGRTVGAGQVTDIVD >gi|308170353|gb|AEHR01000006.1| GENE 52 51050 - 51919 884 289 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1198 NR:ns ## KEGG: FI9785_1198 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 277 1 275 285 179 36.0 1e-43 MSVSDLKKLIELAQKALTIGDLERAKHCYLQYLSVQHDIKCVIALGNIFLQEKRPDEAYK LLKDESDLFSDDMLFKFYLKVLQERHFYIEAKQVSYLLGKPLAIEILPIVGSDADKIMLD FHKLNIITQEDYIKLYSLDEETFIEFSKSLLLDPTTNFMVKATLCNDFIKLGVSQKINIR ILGQMQSFVPADTSIFYQNSIYKYLISFLKHHYENNPSKLNLLVNEITIFCEVIFPCIEF YIIDADKFARCFIDYINGESDNINEYTKLLNDVYAELYRFNYNYKIKNN >gi|308170353|gb|AEHR01000006.1| GENE 53 51888 - 53783 1929 631 aa, chain - ## HITS:1 COG:SPy1020 KEGG:ns NR:ns ## COG: SPy1020 COG0595 # Protein_GI_number: 15675021 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 552 4 552 553 582 52.0 1e-165 MTQQIKIMMLGGVRENGKNMYGVQVDDEIFVLDAGLKYPDSSLLGIDIVIPDLQFFADYG DRVAGIFLTHGHADAIGALPYILRDYDIPVFGSKLTIELAKIAVQHENKQCNDDLFHVID EDTEIDFNNVTISFFKTTHSLPDSLGIDVSTEKGEIVYTGDFKFDPSAKKDYRMDFVRLA DISRKGVLALLSDSTNSESVLQNDQQPDIEKYILNVFKNHDGRIIVASKASNIVRVQEIF QAAAATERKVFLTGRDIGRIVYTAMQMGYLNVPKDILIHGKDLKNIPDKNILILETGRMG EPLKSLQKMATNRHRMIKIKNGDLVFIATTPSHSVETMVAQTSDIIYRSGGIVKQLGYDK HTSGHATGRDLQMLIDTLKPKYLIPVIGEYRLLEIHKNLAVEAGMDPENIYITKNGDCLL LDDDKFYLTDPVPAEDTMIDGSGVGDVGNIVLRDREILSDDGIFIAAVTIDRKKKKIVAE PLVSTRGFIYIKESHDVMDGASDVIKTTISNNFNHKKFDWTELKQDLHTNLEKFLYKETG RRPVVLPIVMEVNQNRHRAMVRRQANVSADHDDIETVKANSNSNLNVISQIVKKGTYSNS AAVSKYKFNNNRKIKIKRDIKNVRFRPKKIN >gi|308170353|gb|AEHR01000006.1| GENE 54 53970 - 54239 412 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518932|ref|NP_964862.1| 30S ribosomal protein S15P/S13E [Lactobacillus johnsonii NCC 533] # 1 89 1 89 89 163 87 3e-39 MAITKEKKDQLVKEFARHEGDTGSAEVQIALLTEDINNLNDHLKLNKQDHHSYVGLLKKI GHRRNLLRYLKGKDIQRYRDLITKLGLRR >gi|308170353|gb|AEHR01000006.1| GENE 55 54423 - 54686 307 87 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116629807|ref|YP_814979.1| 30S ribosomal protein S20 [Lactobacillus gasseri ATCC 33323] # 1 86 1 86 88 122 76 5e-27 MILMPQIKSAIKRVITSDKANKRNASDLSKLRTQVRKFKEAVAANADNVNDLHIEAARAL DKAASKGLISKNKANRDKSRLTKKVAK >gi|308170353|gb|AEHR01000006.1| GENE 56 54734 - 55720 1040 328 aa, chain - ## HITS:1 COG:SP0765 KEGG:ns NR:ns ## COG: SP0765 COG1466 # Protein_GI_number: 15900659 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Streptococcus pneumoniae TIGR4 # 18 328 20 340 345 83 25.0 5e-16 MTLISLFKQSNKDKNHLLIYGTNDLLNNYIMTDFVKQKQFSNYDLTYVDVLESGIDGLIA TMSESSLFSLQRLIIVKNPIFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKI DKRKAIVKLLIKNVNVVETNFKAQEVAKVLKSIAAAEKIKFIGDAFTELIKRSDNVFSLA LNNYLKLKNIVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDEQINNGL TPIALLAIFESQLEFLLCVKILQKRGWVKDQIVDELDANPYRIYYALNNRLDITRLKQSI KYAIKLDYGYKNGTYTGASFLKVYLLNI >gi|308170353|gb|AEHR01000006.1| GENE 57 55717 - 57996 1043 759 aa, chain - ## HITS:1 COG:SPy1408_2 KEGG:ns NR:ns ## COG: SPy1408_2 COG2333 # Protein_GI_number: 15675328 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Streptococcus pyogenes M1 GAS # 483 751 28 299 299 191 37.0 6e-48 MKSLNHISFYNFKNGQFFLLALILAIESTALFLATNILQILVSIFFIAYLLFVFYFKFKE AFLTILCILLVFFLWGSYRKNISEYKNIDSTIKVYPDKLSHSENLYFGCAKYKNSNLYIS INSNQQFIEKFKEGIPFWIKVDDSKINSLMPNTVPGQFNFKKWGLCRDIKQQIQIKHFTI INRKPSIYDLFYLIRYKIKEYLSKMPRLLSFFSHELILAENPDKVNNKDILNSYRNLGVI HLLSISGLHVSLYTMIISKFCSIIKRTERECFILCTVILFVELFLSAFQPGFFRATLTFL LSSFFKSKKIPLSLLDILSLVFIFHLFLQPSLLLNVGAILSYLLVVAIIATRKYSMIMQN VFVNLAILPILLHYFFQMNILTIIFNFLIVPIFNFVLLPITFINLVTFAIIPKLSLVFEM IMQMITKVIETVARAKIGIIIFGQINWWQTILLLILTFILIIQPKMILLKLRIYYWLSLG YLLFFILIHFPLYSQVAFIDVGQGDSILITTPLNRKCYLIDVGGKVNFGKKGNSGISQTE KILLPFLYSQGINKIDGIFLSHQDADHVGNLRDLLSCIRVRKIYFGDGLLDNNSFKRRIA GKVAHTKLINLLAGNLVQEANIKFHILYPFEKTVGKNEDSLSLMFNLSGDNWIFTGDLDR AGEVKIINNFNIKADYIKLGHHGSRTATDPKYLRQIRPKLAIISSGRNNRFGHPHAETLK TLNECKIPYLNTQDNGTIIFRHYLWNKKTIKTCFNKDRL >gi|308170353|gb|AEHR01000006.1| GENE 58 57965 - 58597 587 210 aa, chain - ## HITS:1 COG:SP0954 KEGG:ns NR:ns ## COG: SP0954 COG1555 # Protein_GI_number: 15900831 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 210 6 215 216 122 35.0 6e-28 MFFDKIKKFLDEKKTVCVIGGLILFGIFLYFQVRDDNTIENESLVQQNATKIKTNSDNKQ HSSHSSKFITCDISGAINKSGVYTLKSGSRLNDLIKKAGGLRSDAQLRAINRARILKDQD QIYIPDKTEKVADTAAETNNVKSDDKQDKININTATVQELQKLSGIGQKRAEQIIECRER IGGFKSIDDLKQVSGIGVKTIEKLKPHLVL >gi|308170353|gb|AEHR01000006.1| GENE 59 58640 - 58894 149 84 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 1 80 268 343 350 62 43 7e-25 IVGTGTIEADGHVGTIGCIKQKTIAAARANADIFLVPAECLQGEKKSQTNYQIALKTAKK LKTKMKIVPVYNFRDAIDYLKNNK >gi|308170353|gb|AEHR01000006.1| GENE 60 58899 - 59672 647 257 aa, chain - ## HITS:1 COG:L20937 KEGG:ns NR:ns ## COG: L20937 COG3480 # Protein_GI_number: 15674143 # Func_class: T Signal transduction mechanisms # Function: Predicted secreted protein containing a PDZ domain # Organism: Lactococcus lactis # 4 254 5 257 342 147 36.0 2e-35 MFKKKINIKVKFLIIGFCLVILLIFFIWPTNYYIESPGEVDRVSDYLVTKENKVSHNLYL VTVYGRKANMIDYLLSLLRSDESRFYSKEIMGDTNDNQYDQMQKCYMKSSQNNAIYVAAK SAGIKFKIRYQGVKVLEVLPQSRFYSKLKIGDMIIKANKKNIRSSAALIEYLKKYPLHKK LKLTILRNKKEKQVDGKLINIPRLKKHGIGITLLDNTEIITKAPLKICTPDIGGPSAGLM FTLACYQVFTHKRLSMQ >gi|308170353|gb|AEHR01000006.1| GENE 61 59674 - 60171 295 165 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 5 165 2 161 164 118 38 1e-25 MKENNMRKAIFPGSFDPLTNGHVETVNIATTIFDKVFFVIMTNTNKKYLFTEEERLEIAK TVFKDNSKVEVIARPQELAVDVAMKLGANTIVRGLRNDADFNYEREIAAINKTLAPQLNT ILLLTGPENSFISSTMIKETATFGGDITKLVPDIVSEALKKKLNK >gi|308170353|gb|AEHR01000006.1| GENE 62 60158 - 60712 383 184 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 182 11 193 199 152 41 7e-36 LILRIISGKYARRNLFTLKSNSTRPTSDKVKESLFNAMGQFFSGGRVLDLYAGSGALGLE AVSRGYDSAVFVDINYAACEIIKKNILLTKEKERFEIFKNSDLRAISILASRNYHFDLVF LDPPYAKEKIIKVMKIMLDANILNEKALIVAETDENVELPDVEGYSLINRHHLGRTKFKI YERK >gi|308170353|gb|AEHR01000006.1| GENE 63 60709 - 61041 311 110 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1208 NR:ns ## KEGG: FI9785_1208 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 110 1 109 111 73 41.0 3e-12 MGLVFQDKNKVEQISDRVAIVVYLNKNYEKSFLYKFGNLIYASPKNDYAIMYISESKAKK IITMLTENKFVKSVEISKYNDLDFSSEHTSELMNNLKTTAENKLKNGEEF >gi|308170353|gb|AEHR01000006.1| GENE 64 61019 - 62221 1259 400 aa, chain - ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 4 399 15 415 434 228 36.0 2e-59 MRQKLKYLDYSILIPYLLLSLFGIVMIYSASSDILLVNGFSPMVYMRKQIINFILAFLAL GVPFFTIKLELLKRLNFVFFFLVISIAMLFFLIVLKIISHGQAEINGAVGWIKVGPINVQ PVEFAKLALIFYLAFVLSRKDGHLIPGKIIENLKKPTMLVGLMLFLTILEPDFGGTSILF LIVCIMYSVSGMPIKYAVGGLLILFFSVLAIVFLLLHFQPAFITKYYQFQRLLAFAHPFE LEKTSGGQLVNSYYAIHNGGLFGVGIGNSMQKRGYLPEPYTDFILSIISEELGSIGGIAV VAILFFLVWRITEVGLHTQNQFNSLLCFGIATIIFTETFFNVGAVLGMLPITGVTLPFIS YGGSSIMALTAAVAVVLNIEANEKIMRARKDILNGVSFSR >gi|308170353|gb|AEHR01000006.1| GENE 65 62365 - 64263 2488 632 aa, chain - ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 25 629 5 609 613 863 70.0 0 MIFISCDWSHGFFVSFREEYLLQRRDDIRNIAIIAHVDHGKTTLVNQLLKQSDTLPEHIQ IADRAMDSNAIERERGITILSKNTAVKYKNTTINILDTPGHADFGGEVERIMHMVDGALL LVDAYEGTMPQTRFVLKKALEAGVKPIVVINKIDRPGARPAEVLDEVLELFIELGASDDQ LEFPVVYASALNGTSSYEDDPAKQEQTMAPVFETICKNIPAPVDNSDESLQFQITMLDWD DYVGRIGVGRIYRGKVKVGDNITVMKIDGTKQNFRVTKLFGYFGLNRNEIQEAKAGDIIA ISGINDIFVGETIASAEDAEALPPLHIDPPTLQMNFVANDSPFAGKEGTQVTPKKLEDRL IKQTRTDVSLKVESTDQINSWTVSGRGELHLSILVEELRREGFEMQLSRPKVIYREIEGQ MCEPFEAVQVDTPDQYVGSVIDSISQRKGEMKNMESTGNGQTRLEFLVPSRGLIGYNNEF MSQTAGYGILNHTFEKYGPVIKNWAPGRRNGALVSINQGPSTTYSLQSVEERGQLFIGAG VEVYEGMIVGQSSRERDIAVNVTKGKNLTNTRAAGKDHAAAIKTPKTLTLEEAIEFLNDD EYCEVTPQSIRLRKKILNTNERKKADKKRDKD >gi|308170353|gb|AEHR01000006.1| GENE 66 64459 - 65004 556 181 aa, chain + ## HITS:1 COG:SPy1958 KEGG:ns NR:ns ## COG: SPy1958 COG0242 # Protein_GI_number: 15675756 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pyogenes M1 GAS # 1 180 16 203 204 180 51.0 1e-45 MHDIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAA PQVGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVP RAYKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDKKNPFSLDEDTVVI S >gi|308170353|gb|AEHR01000006.1| GENE 67 65141 - 65365 291 74 aa, chain + ## HITS:1 COG:L91273 KEGG:ns NR:ns ## COG: L91273 COG5503 # Protein_GI_number: 15672273 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Lactococcus lactis # 1 70 1 76 76 63 44.0 9e-11 MIYKVLYQKDQIVNPRRETTQTLYLKADNLVEARKLVEDNTPYNIEFIQELTGNSLAYEK QSPDFKLSTFPSNN >gi|308170353|gb|AEHR01000006.1| GENE 68 65476 - 67053 1271 525 aa, chain + ## HITS:1 COG:SP0121 KEGG:ns NR:ns ## COG: SP0121 COG0595 # Protein_GI_number: 15900063 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 522 37 554 559 644 59.0 0 MDCGIKFPEDGEMGINYIISDYSYLIKNREKIKALVVTHGHEDHIGGIPFLLKKIPEIPV YATPFALALIRGKLDEHGILKNSVLHEEYEDTVLQFSKLSVTFFRTTHSIPDTLGIAVHT PQGTVIFTGDFKFDLTPVMDQPAPDFQKMAKLGEEGVLALLSDSTNAEVATFTKSERFVA KSLHNIITGIKGRIIFATFASNLYRVSTAIKAAVATGRKVAIFGRSMENGIQNGIDLGYL DIPEGTIVEASEINKLPPEKAMILCTGSQGEPLAALSRIADGSHRQISIKPGDTVIFSSN PIPGNTTSVNHLINKLYEAGADVVHGKIHNVHTSGHGGQEEQKMMIELTKPEYFIPVHGE YRMQVIHTETAQATGMAKDHTFVLENGDVLALTKTSSRIAGKIQIPDVFVDTSSTSEVGD IVVHDRKILAEEGLVVVVATIDYQHQRVLAGPDILSRGFVYMRESTDLITAAQKHIYHLL RVEMAKETKSDERELKKNIIETLQDFLYSRTERRPMILPMIIEKK >gi|308170353|gb|AEHR01000006.1| GENE 69 67092 - 68996 1848 634 aa, chain - ## HITS:1 COG:BS_yrrC KEGG:ns NR:ns ## COG: BS_yrrC COG0507 # Protein_GI_number: 16079801 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Bacillus subtilis # 4 594 161 767 798 402 38.0 1e-111 MDELGEILTQAVQYGINKSIITDLYNKYKGETLSKIEEDPYALIAETRGYGFKIADSIAN KLGFKADDSRRLKGALMQVLLDSALKDGNTYLLMDKWLENTGKLLYIDDFDLLANEVNNL KKDNKVVIFDDKVSLTNMYTIEKDIANDLKRISDSNKRDIPYLDDDLNSAIKHVEQKFDI SYDDTQKKAIKTALNNSISILTGGPGTGKTTIIRGILATLQEIEKIPNDVLYTDDPPFLL AAPTGRAAKRMSELTGIDAKTIHRLLGLGISDLNQENMNELNGEILIVDEMSMVDMFLFK NLVSSIFQLKHIVFVGDKDQLPSVGPGNIFSDLIDSSAFPTTKLSMIHRQSDDSSIVDLA HKINQNNAQANIFTKTPNYSFISCKPNSIADAIEKIVDIALEKGFCADDIQVLTAMYNGV SGINSLNDLLQNIMNPAKIDSKKVEMHNEIFRIGDRVLQLQNNPEKEIYNGQIGKVVGID DSQKSAKLIVRFDDREVMLTSNDLSDLTRAYAITIHKSQGSEFPLVILALTMQNYIMLKK NLLYTAITRAQQNLVMIGEEQAYQIALKTEGNDRQTDLCSKIQCIFNKNDIELKENETDN VDNHFENYILTPDLIYSNKIDPMIGMEDVRLDDI >gi|308170353|gb|AEHR01000006.1| GENE 70 69110 - 69433 398 107 aa, chain - ## HITS:1 COG:BS_yrrC KEGG:ns NR:ns ## COG: BS_yrrC COG0507 # Protein_GI_number: 16079801 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Bacillus subtilis # 3 103 13 113 798 72 34.0 2e-13 MAELQLIGMVEGIIYENNEELFKILDVHIIQKIAGYDHDSIRVMGNFGEMDMSIRYKFVG ELIEHSKFGMQFKAKSYQAIMPAEYNAIVDYLASDKFAGIGKKQLKK >gi|308170353|gb|AEHR01000006.1| GENE 71 69461 - 70093 544 210 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1187 NR:ns ## KEGG: LGAS_1187 # Name: not_defined # Def: TPR repeat-containing protein # Organism: L.gasseri # Pathway: not_defined # 1 209 1 208 214 192 51.0 8e-48 MNKKIRKVLPSNKQEAYIHSLICKIDAAPSDVNNYLELSTYLIENNSPEQALELLQKAKA CTNDDTSSLDYNIAICFYMLGDYQAAGKILDSMPNNDATLYQKALVAIKSGQYAKALAYA ITIKKPSMRTYELIGDCWLSQGKLVEARLEYKKIEASIRSAKINFLLGVTYFPEDRAEAE KYFERSKKQDAKYFYSAKKQYNSIVNMIKK >gi|308170353|gb|AEHR01000006.1| GENE 72 70093 - 70749 772 218 aa, chain - ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 207 1 204 206 172 45.0 5e-43 MQLYFVRHGKTEWNLEGRYQGCHGNSPLLPESYEDIKRLSLFLKDTKFVAFYASPLERAL QTALKIKENMNIDVPVIADNRLREFDLGELEGMKFSEAERLYPDQIKAFRYEPDLYDPRK FHGESFSHMIKRGKLLIDEITSKYSGNNDKVLLVSHGAALCALIRSLEGYRLADLRKRGG LINTSLTILETKDSINFNELRWNETSYLGRKITSRDSI >gi|308170353|gb|AEHR01000006.1| GENE 73 70778 - 71905 1298 375 aa, chain - ## HITS:1 COG:L52034 KEGG:ns NR:ns ## COG: L52034 COG0482 # Protein_GI_number: 15672819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Lactococcus lactis # 5 373 15 382 384 509 66.0 1e-144 MTDNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGVCTATEDFEDVK RVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLD ADYIAMGHYAKTVTDENGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQVR MIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTSDGRIVGKHSGLMYYT IGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTGLPS NDTTIHCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGEECLGGA IIDKAYRGNHQLQLI >gi|308170353|gb|AEHR01000006.1| GENE 74 71916 - 72251 370 111 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1190 NR:ns ## KEGG: LGAS_1190 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 108 1 108 111 145 69.0 6e-34 MSNTVKINGSNKEYTLSSNIKIYALIDAGFKKTVNGNYTYEHPLYKDSPYNATAKLKMTI NKELNHLTMVVTDINGLTKVNIFKNKQLVSMVELLQFVLKDLEEKEIIVEN >gi|308170353|gb|AEHR01000006.1| GENE 75 72282 - 72659 429 125 aa, chain - ## HITS:1 COG:lin1987 KEGG:ns NR:ns ## COG: lin1987 COG0262 # Protein_GI_number: 16801053 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Listeria innocua # 1 122 42 157 160 69 35.0 1e-12 MGRKTFDSFPGLLKNRHHVILTTDAEFTNYYKDNDQITIFNSLTDLRKWLLNEQKTIYII GGFSLFDALKDIPDRLEQTIIQNKFKADTKMAIIDYNRYKLINREDFCKDTKNKYNYSFL TYVKL >gi|308170353|gb|AEHR01000006.1| GENE 76 72804 - 73793 965 329 aa, chain - ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 19 329 4 314 314 417 62.0 1e-116 MLRFFFRRIIELTKLEQPYLDLLQKIMLEGHDKSDRTGVGTRSIFGAQMHFDLSKGFPII TTKHVPFGLIKSELLWFLRGDTNIKFLLEHKNHIWDEWAFKNWVSSTEYNGPDMTNFGLR QQTDELFNIKYQEQMKIFTEKILSDATFSKKYGDLGNVYGAQWRRWQTSRGDTIDQLGNV IEQIKTNPDSRRLIVSAWNPEDIPNVALPPCHVLFQFYVNDNKLSLQLYQRSGDMFLGVP FNIASYSLLLNLVARETGLELGEFVHTLGDAHIYKNHFDQVNKQLSRNAYDSPTLWLNPL KHKVLDFEMKDIKLIDYNHHGTIKAPVAV >gi|308170353|gb|AEHR01000006.1| GENE 77 73824 - 74351 619 175 aa, chain - ## HITS:1 COG:FN1483 KEGG:ns NR:ns ## COG: FN1483 COG0503 # Protein_GI_number: 19704815 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Fusobacterium nucleatum # 3 172 1 170 170 210 58.0 9e-55 MAIDFKKYIASIKDFPNEGIIFRDITPILQNGTIYRAATHELAEFAKSKGAEVIVGPEAR GFIVGCPVANELGIGFVPARKPHKLPRAVKKASYDLEYGSNSLEMHIDAIKPGQKVVICD DLMATAGTLHATVKLVKELGGEVVGAAFYVELVDLKGVEKFSDIDIYSLVKYHGE >gi|308170353|gb|AEHR01000006.1| GENE 78 74447 - 76732 2040 761 aa, chain - ## HITS:1 COG:BS_yrvE_1 KEGG:ns NR:ns ## COG: BS_yrvE_1 COG0608 # Protein_GI_number: 16079816 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Bacillus subtilis # 13 550 19 559 560 407 38.0 1e-113 MIWKKKQAESLDKDLITKYKLSPIQAKLFAIRSINTDQQLDFWLNADETKLADPFLMHDM KKTVDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPS LERYQELVSNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCN YPNQDYPFDDYCGAGVAYTICRALMADNMSELLDLAMIGTIGDMVKVSGEGHIIVKRGLE ILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNLLLCDDEEE AEKLASIVEKLNDKRKQLTQEIFEICEKQIQQYGWQSKKTLVLYDHNFHEGVLGLVTNKI AEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGTVLTKFGGHEFACGLSLKKD SLVKLRNCFESSFQPVATSELVKMYDDELNLNDLTLDTYRQMAKVGPFGTDNPEPVFSIT NPHISKLIKIGQNKNHIKMCVSNFSNELDLIGFDRGYLDTNILPYVHMIMVTLGINKWNN KAKLQGIISDFIFAAPLSLTNVRIVDLRNENYIMGFADRYLLFDKNSIEIANNIDNIASD KIILETDYMQNNESVVFLDTPTSKEQFDRVLNNDFNKIYLRFLIDPYPISKLPDRELFEN IFNYIVNHPNLSLSDYKLVATYLGINYDCIKFVLRVFWELNWIDYDVKNELIKAITSPKV TKITDSKYFQAISQRLTFTDMLKNMSSDSLLKYIKDHNSNL >gi|308170353|gb|AEHR01000006.1| GENE 79 76901 - 77413 575 170 aa, chain - ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 1 160 40 208 287 117 43.0 7e-27 MADKKTRRNINLRYILAFICFIVGLALIFSPQITSFIAKQSQNEVLHNLNKDKIRENEKS KGQFDFSKVKSIDFAQVTKSRIKNNAKAVGAIAIPSVHMYLPILKGLSNDSLSTGGGTMR PDQKMGHGNYPLAGHYMTANGSLFSPLESVKKRKLIYLTDLKKFIFIKYI >gi|308170353|gb|AEHR01000006.1| GENE 80 77415 - 79253 2171 612 aa, chain - ## HITS:1 COG:BH1342 KEGG:ns NR:ns ## COG: BH1342 COG0481 # Protein_GI_number: 15613905 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Bacillus halodurans # 10 606 10 606 609 811 66.0 0 MDLDKLKEYQKHIRNFSIVAHIDHGKSTIADRILELTDTVSERQMKNQLLDDMPLERQRG ITIKLNSVEVKYCAKDGETYFFHLIDTPGHVDFSYEVSRSLVACEGALLIVDASQGVQAQ TLANTYLAMDSDLEILPVINKIDLPSADPDMCKDEIEEMLGLDATEAVEVSGKTGIGIPD LLERIVQDIPAPSGDLKAPLKALIFDSKYDDYRGVVLSVRIEDGIVKPGDKIRIMNTGKD FEVTEVGVSSPYPVKKEMLVAGDVGYITANIKSVRETRVGDTITSSCNPTATPLPGYRQI PPMVYSGMYPVDNQKYDDLKEALQKLQLNDAALEFEPETSQALGFGFRCGFLGLLHMDVV QERLEQEFGMQLIMTAPSVDYHAIMNDGSVKLIDNPSDLPDAGEYQDVQEPFVKAEIMVP NDFVGAVMELCQKKHGEFQTMDYLDKFRVNVIYKMPLADIIYDFFDDLKSFTKGYASLDY EIIGYRSTNLVKIDMLLNHEPVDALSFIAHNDEAQTRARQMTSMLKKLIPRQNFEVDVQG AIGAKIISRATIKPYRKDVTWKIHTGDPDRRAKLLEKQRKGKKRMKAIGRVEVPQDAFMA VLKMDDDDIKGK >gi|308170353|gb|AEHR01000006.1| GENE 81 79443 - 80576 1277 377 aa, chain - ## HITS:1 COG:lin1509 KEGG:ns NR:ns ## COG: lin1509 COG0484 # Protein_GI_number: 16800577 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Listeria innocua # 1 373 1 370 376 356 52.0 4e-98 MSQRDYYDILGVDKTASDAEINKAYRKLAKKYHPDINHEQGAEEKYKEVNEAYEVLHDKQ KRAQYDQFGHAGVNGQSGFGGGTQYSDFSGFDGFGDIFGDLFGGGTGRRHVDPTAPQRGQ DLDYTLTIDFMDAIKGKKTNITYTRSEICSSCHGNGAEKGTHPITCSKCKGMGVINITRQ TPFGIISQQASCDQCGGKGLIIKHPCNTCHGKGCIDKEQTLQVDIPAGIDNGQQIRLSGQ GEAGKNGGTYGDLYIVFKVKPSAEFTRRGTTIYSEAKISFAQATLGDYIQVDTVHGKVSL KIPAGTQPNTRFKLRGEGVPRLNGKGNGDQEVLINIVIPKEINDKQKEALVDFVKAGGGS ITPQEKNFFERLKDKLS >gi|308170353|gb|AEHR01000006.1| GENE 82 80645 - 82486 2469 613 aa, chain - ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 613 1 608 611 779 71.0 0 MSKVIGIDLGTTNSAVAVLEGKEPKIITNPEGNRTTPSVVAFKNGEIQVGEVAKRQAITN PNTISSIKRHMGEEGYKVKVDGKEYTPQEISAMILQYIKKFAEDYLGEPVKDAVITVPAY FNDAQRQATKDAGKIAGLNVQRIINEPTASSLAYGLDKDEKDEKILVYDLGGGTFDVSVL ELGDGVFQVLSTNGDTNLGGDDFDNAIINWLIENFKKENGVDLSSDKMALQRLKDAAEKA KKDLSGISSTHISLPFISAGESGPLHLEADLSRAKFDELTHDLVARTKIPFDNALKDAGL SVSDIDKVILNGGSTRIPAVQEAVKQWAGKDPDHSINPDEAVALGAAVQGGVITGDVKDI VLLDVTPLSLGIETMGGVFTKLIDKNTTIPTSKSQIFSTAADNQPAVDVHVLQGERPMAA DNKTLGRFQLTDIPAAPRGVPQIQVTFDIDKNGIVNVSAKDMGTGKEQKITIKSSTGLSD EEIKRMQKEAEEHAEEDKKKKEEADLRNEVDQVIFSTNKTLEEVKGKLSDNDIKPVEDAL EALKKAQKDNDLAAMKEKKDALSKVAQDLAVKLYQQQNTQGQSGTKENGNDKGTDGNGNS TVDGDFHKVDPDK >gi|308170353|gb|AEHR01000006.1| GENE 83 82503 - 83051 599 182 aa, chain - ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 33 180 26 172 174 112 51.0 4e-25 MKEHKDNSADSKKEKNNTKTKTSSNKEDVSKYTKKIQELELKNQELEDKYLRSEAEIQNA QNRYSKERAQLIKYESQSIAKDILPALDNLERALMVDSDSDVTVQLKKGVQMTLDALIKA LSDHGISEIKADGEKFDPKLHQAVQTVDAVKDQEPDHVVQVLQKGYLYKDRTLRPAMVVV TK >gi|308170353|gb|AEHR01000006.1| GENE 84 83063 - 84121 1219 352 aa, chain - ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 350 1 342 345 244 37.0 1e-64 MLTERQELILETIINDFTQTHEPVGSKTVMLQLPIKVSSATIRNEMVVLEDFGFLEKTHS SSGRVPSASGYRYYLDYLVDPIEISDSVYHQIIKQLDQPFHQVNEIIEEATKILSDLTNY TAFAAGPENIDIYITGFRIVPLSANRVMAILVTDDGNVQNQIYTLPHHTSGDEVEKAVAL INKQLIGKSLTDVNSGCLNQIAKELVSRGSATIFLDLLQDVIKDAASEQMYVNGQINLLN NSGINDLNKLRSLYQLIDQKQLMSDFIGFDTNQIINHNSHTNVRVHLGSEMPSKLLEDCS LLTVDYSVGKHGTGTIALLGPSNMPYSQMIGLLEYFRNELANKLLEYYGDFK >gi|308170353|gb|AEHR01000006.1| GENE 85 84380 - 85000 481 206 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809324|ref|ZP_07703193.1| ## NR: gi|309809324|ref|ZP_07703193.1| hypothetical protein HMPREF9215_0091 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9215_0091 [Lactobacillus iners SPIN 2503V10-D] # 1 206 1 206 206 310 100.0 4e-83 MKWAIRRYFLKKAPKTSNLSDKVSDFTNKISNDEGVQGFIDNIVKYDVNNLFDKILLAIF SVLGLNIIYILYMSSQYKASIYSMLSYLSNLSSAFAFQNFVVFCAIAALVIKFSELKDGN KWKKATFVFPAVTVVVTVLMHVVCHKIFSILGGKYSFSSLISTFTNYADVENSGKMLAVF LFIVLILTIVSIVTLFMNLSKTKNNK >gi|308170353|gb|AEHR01000006.1| GENE 86 84957 - 85124 215 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312875491|ref|ZP_07735494.1| ## NR: gi|312875491|ref|ZP_07735494.1| hypothetical protein HMPREF9216_0290 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9210_0819 [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9216_0290 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9210_0819 [Lactobacillus iners SPIN 1401G] # 1 54 1 54 247 106 98.0 7e-22 MIKAIKVTEKSVILGFPDGTAKEVPISDFDCSVHVGDEFEMYEMGDKKIFSKKST >gi|308170353|gb|AEHR01000006.1| GENE 87 85460 - 85630 180 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAEDVNKLTDEEVGAIIQARYNSEMRQPENEEQRKLAEERRRKLKEVLKILQEQDN >gi|308170353|gb|AEHR01000006.1| GENE 88 85714 - 86181 361 155 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809284|ref|ZP_07703153.1| ## NR: gi|309809284|ref|ZP_07703153.1| hypothetical protein HMPREF9215_0094 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9215_0094 [Lactobacillus iners SPIN 2503V10-D] # 1 155 1 155 155 285 100.0 1e-75 MKVILAAKKYLKKDLQNNQINKKTRKTIDLYQQSFILPFPVCVGNKDKDGLKLFEKINGY LSGYYEPISQSESEMLARMVSSIQNGLLKSKLQQDIIVYRKEYYVKDLEKPINKFLSTSV TTRGALTGNPNIAIIVPKGTLGAYVEVLSWGKFKK Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:29:01 2011 Seq name: gi|308170350|gb|AEHR01000007.1| Lactobacillus iners SPIN 2503V10-D contig00057, whole genome shotgun sequence Length of sequence - 3676 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1931 2586 ## HMPREF9243_0633 LPXTG-motif cell wall anchor domain protein + Term 1979 - 2022 8.7 + Prom 2021 - 2080 6.6 2 2 Tu 1 . + CDS 2126 - 3674 1712 ## HMPREF0424_0005 LPXTG-motif cell wall anchor domain protein Predicted protein(s) >gi|308170350|gb|AEHR01000007.1| GENE 1 3 - 1931 2586 642 aa, chain + ## HITS:1 COG:no KEGG:HMPREF9243_0633 NR:ns ## KEGG: HMPREF9243_0633 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: A.urinae # Pathway: not_defined # 28 270 2686 2902 3278 77 34.0 1e-12 EIDKNGHLIVTIGEGADAKTVDAGQAKGADGKTPHIKVSDKVNGETTITIDGYNDDGTAY HKEVKVSDGITYAPVATKGEDGVTTIKFYPVDPKTGKPDKTKQPVGSDVQVKDGVNGKDG KSVTNAYVDANGHLMITIEGQANPIDAGLVKGLSAKVDIKRNEENTGVDITVTQEKWDNN GNLTKETTTNTVYDGVGPKIEVAEQGNSHIITITDQIRDREGIKDKPNAKPQVIEVKDGK DGETPTITKGEGKDENGHVFTTVTFTTSKGSTTVVIPNGKDGRDGKDCQGTCGICDNRDF KPVKFDARYEDGADLGRIQLRFIPVELGDQPSNVTAAVKHTRSRRSLGDQEVANSGLLNL MATSVLVGSDREAVDSPAEDKTVQGPIANTYKVEGLLDGMVFNPEDATITGKAKITDWKD GETKRRVPIRVTVYNSDGSTKVAESDIVVTRTITSKPSVQGTSTPDTSIPNPGKSMSYVG VVPGTRPYYTLKMIGRPLPKGIKFDSTTGTFTGTAKVDDWQDGEVSRIYPFVVTVVNCDG KQYKAEDSITIYRKINPEPTPVPEPAPVPEPMPVPEPAPVPEPTPVPEPTQVPEKPVSTD KTPTSGKEKLPQTGETSDIASLVAALCLAAGLVVLPKKKEQD >gi|308170350|gb|AEHR01000007.1| GENE 2 2126 - 3674 1712 516 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0424_0005 NR:ns ## KEGG: HMPREF0424_0005 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: G.vaginalis # Pathway: not_defined # 76 498 45 458 920 329 42.0 2e-88 MVFNRRRSNLCYGIRKLAIGVVSMVISVAFLTEISVAQAKENTSNYQEHLVDKKASVADL TKTREKSKNQVESFRPLNQQDMIKLAKGQLTLPGGQVDPSFYHEPVLDVAGDDDHDGLKN GQELYVEKVNNREFLGYHTHPLLSDSDGDGLLDADEIKNHTDPLVWNICDRDLAMMMELS YRDDNYIQQVLDSHHPLKEKYNGRQEYELMHTELAPFWKAEKSFHESNGLDATFFVTHSD LPYLKDNQVQVLAIRGTKGGADLDDDLNLTLGMTPGQVDSLNKILKQLQNEGALTNTYLT GHSLGGYLAMTALVEARDKGYTGIKKAVTFNAPKIRGNLFNKKMQRVAKEANLLTQRGEA IHYAVSNDNVISAVGNFIGAKSVGKSANGHSSRTYFEDRIMQFGFKQGRRKSSMAGTGDQ EANLKKVLAGFSNPVVVTQADAYPAKIKNHIVTEVGVIPDLTQCILNRNELPLAKVEDKT SSMHLYQPYQIGKGQCGSLSLTYQDGSKKTYFVTID Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:29:24 2011 Seq name: gi|308170342|gb|AEHR01000008.1| Lactobacillus iners SPIN 2503V10-D contig00002, whole genome shotgun sequence Length of sequence - 10434 bp Number of predicted genes - 11, with homology - 9 Number of transcription units - 6, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 406 - 453 9.3 1 1 Tu 1 . - CDS 603 - 899 119 ## gi|309804925|ref|ZP_07698986.1| conserved domain protein - Prom 1143 - 1202 8.6 2 2 Op 1 . - CDS 1265 - 2875 176 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 3 2 Op 2 . - CDS 2907 - 3677 613 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 4 2 Op 3 . - CDS 3695 - 4453 460 ## Lbuc_0158 hypothetical protein 5 2 Op 4 3/0.000 - CDS 4443 - 5333 824 ## COG1131 ABC-type multidrug transport system, ATPase component 6 2 Op 5 . - CDS 5335 - 8004 2583 ## COG0515 Serine/threonine protein kinase - Prom 8046 - 8105 6.8 - Term 8041 - 8098 3.2 7 3 Tu 1 . - CDS 8110 - 8238 78 ## - Prom 8316 - 8375 8.2 + Prom 8603 - 8662 5.7 8 4 Tu 1 . + CDS 8696 - 8899 259 ## gi|259501188|ref|ZP_05744090.1| conserved hypothetical protein + Prom 8954 - 9013 4.1 9 5 Op 1 . + CDS 9112 - 9462 405 ## LGG_02944 integrase 10 5 Op 2 . + CDS 9522 - 9866 88 ## 11 6 Tu 1 . - CDS 9805 - 10215 179 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 - Prom 10238 - 10297 8.3 Predicted protein(s) >gi|308170342|gb|AEHR01000008.1| GENE 1 603 - 899 119 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804925|ref|ZP_07698986.1| ## NR: gi|309804925|ref|ZP_07698986.1| conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners LactinV 03V1-b] conserved domain protein [Lactobacillus iners LEAF 2052A-d] conserved domain protein [Lactobacillus iners LactinV 09V1-c] conserved domain protein [Lactobacillus iners LactinV 03V1-b] conserved domain protein [Lactobacillus iners LEAF 2052A-d] # 1 98 1 98 98 182 100.0 1e-44 MHSKITELELLYNKMFKSAFVYSQIQEIVQNDKTALDINGQILHFTDYVTIKEDIDQLLS GRINFVDIGHTCDLHNSCYSQQCILKRLKVLMPKFKLT >gi|308170342|gb|AEHR01000008.1| GENE 2 1265 - 2875 176 536 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 320 530 1 217 223 72 28 1e-12 MIKLIHFESKGKIVLAFIFMLIASFDGVVLSYIVSEAGTLSSSSNNTSVLNFGIKSLIGL SLVYIGKFLYTISVASIIKDLNIYLKQNFFWNKFSDKKNIPNSSGIISNLSNDFKLIENK YFQGIFSLTSDILLCIVSLIYMLKFNIYISLLFLSMSFLPMIVPFAFSKKLKLAGNNWSK ANEIYINHIKDYLQGFNVLRTYSIYKEIYQKSLKNLKFLEQKNYDLMKTQAVAGLLSSLC AGVSFIVPFVVGCFVIINTNTLSFSALMGIFLLNDRVVGPLTSVASDFNEIKTTDELRKK LFIFENRVSVASDLHKTTPVNDLQSLKFNNVTYEINDKITLTLNKTLVAPFKVLICGESG SGKTTLLRLIKGDILPANGDIEAKDIYGKDMIIFQDVAYIFQTPYIFDTTLLDNLTLFQS KEFTQEKIIRVLKKVSLYDELGGKNSLKYMCGTMGKNLSGGQIQRLEIARALLRDKKVLL VDEATANLDKNNSKKIRDLLFNTPVPVIEVAHHYNLNDKRYTDKFELKNGKLIPIG >gi|308170342|gb|AEHR01000008.1| GENE 3 2907 - 3677 613 256 aa, chain - ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 255 1 255 256 60 27.0 2e-09 MYTELKQELYKLGHRKLPWWIISFLILFMIFMGLAMGRDYSKLLVMTCYDSSQAIMLILV VVGSTIFSMEFQNKTILMVMYRASNKGAVYLAKFITIFIYNVFLHLVAMLVTIFFNTVPI LVNPVAWSTTYKYQQSLFINMIATTGVDIVTSTLIISLICLTSCLINSDTIVIVVNALII FMGSTLSVNLLNANIGPIKLIRWNPLNMLNLTTQYYNYATYHLTSMLSSTQLLIGTLCYT AIFTILGYLIFRRKSF >gi|308170342|gb|AEHR01000008.1| GENE 4 3695 - 4453 460 252 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0158 NR:ns ## KEGG: Lbuc_0158 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 43 252 49 258 258 90 27.0 6e-17 MKIDLLHEFYKFAHRRIPLYGILILLGLMLYTIGTSYKISPYLLTQGFGAGQWAIIIIIA LSVDMISMEYRDHTMATLMYKTSNKSALYTAKFIVLVIYSILLLACGVLFSFIIKGILVG SRYYWLENYHGHSLINALLLNVGGTLIYLLFIVAFSLVLILLIKNNATVIMIGLAIGFLG ADLSSLAMVAFPSLKAILAWNPLNMINIISQLSNNDMQKITYLTNSQLIIANLIYAALFF GIGLSIFKKRAI >gi|308170342|gb|AEHR01000008.1| GENE 5 4443 - 5333 824 296 aa, chain - ## HITS:1 COG:SA2302 KEGG:ns NR:ns ## COG: SA2302 COG1131 # Protein_GI_number: 15928093 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 212 3 211 231 188 49.0 9e-48 MLDVKNINIYYGHKEIIRDASFTISSGEIVGLIGPNGAGKTTIMKTLLGLTHFTGKLSFN GQPITLKDHAALQTVGALIENPAIYPFLTGRDNLKLYSQDSTDTAKLITRLGMDGYIDRK AKDYSVGMKQKLGIALALLNNPKLVILDEPMNGLDIEATISIRKLIHEYAAQGTAFLISS HVLSELQKVMTSVIIINHGKITMNSPMSRFTQEISSESKLQTTAMKQTTELLQQAKISFN QKGDYLIVNQENIATIQQLLFENKIWINYLAPAGLTFEQKIVNVLQTKQGGDNNEN >gi|308170342|gb|AEHR01000008.1| GENE 6 5335 - 8004 2583 889 aa, chain - ## HITS:1 COG:SP1344 KEGG:ns NR:ns ## COG: SP1344 COG0515 # Protein_GI_number: 15901198 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Streptococcus pneumoniae TIGR4 # 10 867 3 867 869 194 24.0 5e-49 MINGTDYVKYIKNKSIPFYSHSNNKKDDSITFHSASYNKSNWNSIITDDWHYMMHNSNDL PDQGWKIHISANLEDAQEVLIKVSELLITTKVSFKFIPDFLTLELSYSKNADRIEAGKFI TIYPKNDTEFCELLDPLKRITDQFKEGPYILNDRPWKQSNVYYRYGGFRAMTAIKDGRTI YVIRTPDGDFIEDKRVPYFSKPDFVNEPIYIQENNTYPNPETFAKLDSLNIKEALHFSNA GGVYVGKYKGHDVVIKEGRPFIGIDQKQCDGFTRIKAEYKTLMKLKYVAGVVDPIGYEKI WKHNYLIEEKIPGETLGEYMAVNFPFPNNSDVTLYKHNALQIIHKLVNLVKEIHQKGFAI VDFQPENIMIDTDKRHGTINVRLIDFESAGPLNNRYNPNLVTQDYTSFQSKTFKDADWYT LNRIARSIFLPVESTMFYSPELEKRQNKNIKFKFGKDVVDYLTQVQNLCAKHTTIYRQPA FYDGYVETPQESINSNNLAQNIAALEKGITQNINYDLKGLIYGDIKQYNDSLSWYAINYG TMGTIMALQRNNSNVLRTSAFRNWLNKVEERIDSITKQDSSFNVGLFDGLGGIALILYEL GHKDMAEELIHRCNSTHNALNISMYSGLTGLGLVNLVLYLSTNKNNYMRVAKQIADTIIS RYHSGEFDNQEEYEGRLGLIKGWAGPVIFLWKLGTLIDDLHYRSEAIIILDKIVATGIIN TEQGSALSDKSKGMVRILPYLDTGFAGLSLVLMDINLDAPNIIRKKYSNIWETIQKDVGS FCTYQCCLFSGTAGLAMYSNTVKLNFNKTNSFDIYLQALNNFMLSTNRKNMLVPGQFGVK CSMDYETGAAGVLIALLNIENQINWLPLLANNPLNIFNSKPTTQLKVMK >gi|308170342|gb|AEHR01000008.1| GENE 7 8110 - 8238 78 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKNPVVNLQKTPASKISSSVRMRNSGFSFNCRGQSTLSINCR >gi|308170342|gb|AEHR01000008.1| GENE 8 8696 - 8899 259 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259501188|ref|ZP_05744090.1| ## NR: gi|259501188|ref|ZP_05744090.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] integrase [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners DSM 13335] # 1 62 1 57 255 73 61.0 5e-12 MHFTQFLNEFEGINVYYSTVYQLLSQAEVDSPLKFKRLLVETALRQNIGLSTLKLLKPKP SKPLISA >gi|308170342|gb|AEHR01000008.1| GENE 9 9112 - 9462 405 116 aa, chain + ## HITS:1 COG:no KEGG:LGG_02944 NR:ns ## KEGG: LGG_02944 # Name: tnp # Def: integrase # Organism: L.rhamnosus # Pathway: not_defined # 4 114 254 415 478 70 30.0 2e-11 MDVLTRLGYACKQLGTEIVITSVSQVKGMVERANQTFQGRLKQEFRIAQINDIETANDYL LNTFVPDFNENNNLVCFNNHTKCLVIEAFDKQRFITVDDEIYFMREIPKNVKYSPD >gi|308170342|gb|AEHR01000008.1| GENE 10 9522 - 9866 88 114 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEESIIYQTASRKEHTIKSNMLKKKAEQKGSPNVYNFLGHFPLILTLHFNFLCMFLYNKL IQTCVYNIIINIKIIRIKNAKNYFNIVILIYNPFSTCFYSSRGSYLFLDIYRHL >gi|308170342|gb|AEHR01000008.1| GENE 11 9805 - 10215 179 136 aa, chain - ## HITS:1 COG:MA1614 KEGG:ns NR:ns ## COG: MA1614 COG2110 # Protein_GI_number: 20090472 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Methanosarcina acetivorans str.C2A # 3 126 29 151 195 159 64.0 2e-39 MNLRVIKDDITRLKVDAIVNAANKTLLGGGGVDGAIHQAAGPELKEVCRKLNGCMTGEAK ITEAFKLPAKYIIHTVGPIYPFHTISENKKLLRSCYINSLNIAKAYKLKSIAFSCISTGV YKYPKKDSCHDCCRNM Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:29:53 2011 Seq name: gi|308170340|gb|AEHR01000009.1| Lactobacillus iners SPIN 2503V10-D contig00045, whole genome shotgun sequence Length of sequence - 1625 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 276 111 ## COG3041 Uncharacterized protein conserved in bacteria - Term 542 - 571 -0.3 2 2 Tu 1 . - CDS 712 - 1425 538 ## COG1451 Predicted metal-dependent hydrolase - Prom 1489 - 1548 5.9 Predicted protein(s) >gi|308170340|gb|AEHR01000009.1| GENE 1 1 - 276 111 91 aa, chain + ## HITS:1 COG:SP0276 KEGG:ns NR:ns ## COG: SP0276 COG3041 # Protein_GI_number: 15900210 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 89 2 92 92 82 46.0 2e-16 LQLKTTSKFRKDYRRIKKRGLDIYLLKEVLDKLCARETLDLKYKDHALSGSYQGFRECHI QPDWLLIYAISEDEIILVASRTGSHADLFNM >gi|308170340|gb|AEHR01000009.1| GENE 2 712 - 1425 538 237 aa, chain - ## HITS:1 COG:jhp1425 KEGG:ns NR:ns ## COG: jhp1425 COG1451 # Protein_GI_number: 15612490 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Helicobacter pylori J99 # 17 234 16 233 235 149 37.0 4e-36 MISRTAVIGGIEVKITKKSTLKNLYIRINPPKGNVTISAPLHYPDDDISLFVLKKLPEIN AVRARMRSQLRQNKREFISGESHYLWGKPYRLDVAVGTKKYSIEKMPHKILFSVPKGAST ENKEKVFNEWYRSELKRVMQSLIPIVEERMNLSANEYRIKNMKTRWGTCNIDKKRIWINL QLAKKPIECLEYVLVHEMVHLLEANHTHKFHALVGKYYPTWKDAKKTLEKMPLDYLK Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:29:54 2011 Seq name: gi|308170338|gb|AEHR01000010.1| Lactobacillus iners SPIN 2503V10-D contig00148, whole genome shotgun sequence Length of sequence - 796 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 794 329 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|308170338|gb|AEHR01000010.1| GENE 1 2 - 794 329 264 aa, chain + ## HITS:1 COG:SPy0198 KEGG:ns NR:ns ## COG: SPy0198 COG2801 # Protein_GI_number: 15674400 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 9 263 2 255 268 239 51.0 3e-63 EKGYQLKYLLKAIGVSKSTYYFEINKSDVVADRNEELLIVIREIFEKNKYRYGVRRIYHE LLNRGYHINHKRVQRLMHEAGLAGKRPKEKYHSYKGEVGKIADNVINRDFSTTAPLQKWT TDVSQFNFSWGKCYIVPVLDMNTNEIISYDLSKSPNLKQIERMLDKAFDQFPSVEGLVFH SDQGWQYMHAYFRNTLKERGIIQSMSRKGNCYDNCIMETFFGRLKNEMYYGYEKDYSSFE EFSKAVEEYIDYYNNKRIQAKTKW Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:29:56 2011 Seq name: gi|308170337|gb|AEHR01000011.1| Lactobacillus iners SPIN 2503V10-D contig00058, whole genome shotgun sequence Length of sequence - 1404 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 7 - 96 46.8 # Ser GCT 0 0 - TRNA 99 - 172 91.8 # Ile GAT 0 0 - TRNA 179 - 249 61.2 # Gly TCC 0 0 - TRNA 263 - 335 78.2 # Phe GAA 0 0 - TRNA 342 - 414 62.0 # Asp GTC 0 0 - TRNA 417 - 490 77.0 # Met CAT 0 0 - TRNA 526 - 599 89.6 # Met CAT 0 0 - TRNA 613 - 686 73.7 # Met CAT 0 0 - TRNA 714 - 787 86.0 # Pro TGG 0 0 - TRNA 791 - 867 78.4 # Arg ACG 0 0 - TRNA 877 - 962 68.7 # Leu TAA 0 0 - TRNA 975 - 1046 79.2 # Gly GCC 0 0 - TRNA 1051 - 1124 92.0 # Thr TGT 0 0 - TRNA 1157 - 1238 59.0 # Leu TAG 0 0 - TRNA 1254 - 1326 84.3 # Lys TTT 0 0 - TRNA 1329 - 1401 86.4 # Val TAC 0 0 Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:29:56 2011 Seq name: gi|308170335|gb|AEHR01000012.1| Lactobacillus iners SPIN 2503V10-D contig00040, whole genome shotgun sequence Length of sequence - 659 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 647 453 ## COG1418 Predicted HD superfamily hydrolase Predicted protein(s) >gi|308170335|gb|AEHR01000012.1| GENE 1 2 - 647 453 215 aa, chain - ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 3 213 7 210 215 144 40.0 9e-35 MSLDDIKSFSKENMAFDPTGHDFLHAQRVAKLAQKIYTEDFKKDATDIGLYVVKAASYLH DTIDEKVTTDKKNRLIEIRILLSHENITTQAREDILDIIQHMSYADNIEHHYQLSNEGKC VQDADRLDALGAIGIARAFAYGGHAGQEIYDPQISVKEIKTHDDYRHHKSTTINHFYEKL LKLASLMNTRTGKLEAIRRTKYMRDFLSEFQMETG Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:30:21 2011 Seq name: gi|308170256|gb|AEHR01000013.1| Lactobacillus iners SPIN 2503V10-D contig00030, whole genome shotgun sequence Length of sequence - 86825 bp Number of predicted genes - 84, with homology - 82 Number of transcription units - 39, operones - 17 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 62 - 121 2.9 1 1 Tu 1 . + CDS 196 - 654 429 ## FMG_0943 hypothetical protein - Term 636 - 671 0.2 2 2 Op 1 . - CDS 683 - 1813 784 ## CLM_2298 DEAD/DEAH box helicase domain-containing protein 3 2 Op 2 . - CDS 1833 - 3260 1203 ## Ethha_1804 helicase domain protein 4 2 Op 3 . - CDS 3257 - 4069 639 ## CLM_2299 hypothetical protein - Prom 4133 - 4192 4.5 - Term 4590 - 4619 2.1 5 3 Tu 1 . - CDS 4625 - 5281 735 ## MGAS10750_Spy1699 hypothetical protein - Prom 5531 - 5590 3.2 - Term 5444 - 5486 -0.6 6 4 Tu 1 . - CDS 5604 - 6200 583 ## MGAS10750_Spy1698 superfamily II DNA and RNA helicase - Prom 6312 - 6371 5.0 + Prom 6057 - 6116 4.5 7 5 Tu 1 . + CDS 6199 - 6438 149 ## + Term 6462 - 6501 -0.7 8 6 Op 1 . - CDS 6393 - 6644 300 ## MGAS10750_Spy1698 superfamily II DNA and RNA helicase - Prom 6668 - 6727 2.3 9 6 Op 2 . - CDS 6731 - 7060 427 ## SPAP_0865 hypothetical protein - Prom 7091 - 7150 5.4 - Term 7136 - 7172 2.1 10 7 Tu 1 . - CDS 7219 - 7482 223 ## SPN23F_09511 hypothetical protein - Prom 7503 - 7562 4.8 11 8 Tu 1 . - CDS 7627 - 7941 287 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 12 9 Op 1 . - CDS 8059 - 8316 402 ## gi|309804715|ref|ZP_07698780.1| conserved hypothetical protein - Prom 8336 - 8395 2.2 13 9 Op 2 . - CDS 8399 - 8833 354 ## SSA_0253 CAAX amino terminal protease family protein, putative - Prom 8889 - 8948 5.3 - Term 9000 - 9047 -0.7 14 10 Tu 1 . - CDS 9055 - 9381 290 ## gi|309804729|ref|ZP_07698794.1| hypothetical protein HMPREF9213_0084 - Prom 9543 - 9602 2.7 15 11 Op 1 . - CDS 9609 - 9896 304 ## COG0286 Type I restriction-modification system methyltransferase subunit 16 11 Op 2 . - CDS 9950 - 10147 208 ## bpr_I1915 DNA-binding protein excisionase family protein - Prom 10189 - 10248 8.3 - Term 10396 - 10454 3.1 17 12 Tu 1 . - CDS 10480 - 11829 1652 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Prom 11891 - 11950 7.5 18 13 Op 1 . + CDS 12185 - 13564 1364 ## COG1757 Na+/H+ antiporter 19 13 Op 2 . + CDS 13639 - 14238 444 ## COG0670 Integral membrane protein, interacts with FtsH 20 13 Op 3 . + CDS 14210 - 14353 75 ## gi|312875398|ref|ZP_07735402.1| putative membrane protein + Term 14357 - 14415 7.1 - Term 14353 - 14391 4.8 21 14 Tu 1 . - CDS 14396 - 14977 600 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 15095 - 15154 11.8 22 15 Op 1 2/0.000 - CDS 15156 - 16064 1179 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 23 15 Op 2 21/0.000 - CDS 16084 - 17514 1822 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 24 15 Op 3 31/0.000 - CDS 17518 - 18957 1791 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 25 15 Op 4 1/0.000 - CDS 18957 - 19259 353 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 26 15 Op 5 4/0.000 - CDS 19270 - 20385 1187 ## COG4851 Protein involved in sex pheromone biosynthesis 27 15 Op 6 5/0.000 - CDS 20406 - 22424 2077 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 28 15 Op 7 . - CDS 22438 - 24666 2219 ## COG0210 Superfamily I DNA and RNA helicases - Prom 24703 - 24762 9.0 29 16 Op 1 . - CDS 24768 - 25379 324 ## COG1705 Muramidase (flagellum-specific) 30 16 Op 2 . - CDS 25382 - 26029 707 ## LBA1940 hypothetical protein - Prom 26139 - 26198 8.6 - TRNA 26050 - 26135 54.5 # Leu AAG 0 0 31 17 Tu 1 . - CDS 26207 - 27349 1753 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 27396 - 27455 9.6 - Term 27431 - 27486 5.4 32 18 Tu 1 . - CDS 27497 - 30160 2770 ## COG0474 Cation transport ATPase - Prom 30196 - 30255 6.6 - Term 30173 - 30214 5.0 33 19 Op 1 5/0.000 - CDS 30317 - 31180 1080 ## COG0171 NAD synthase 34 19 Op 2 . - CDS 31183 - 32661 1721 ## COG1488 Nicotinic acid phosphoribosyltransferase 35 19 Op 3 . - CDS 32712 - 33410 832 ## COG3774 Mannosyltransferase OCH1 and related enzymes 36 19 Op 4 3/0.000 - CDS 33473 - 34561 1017 ## COG0438 Glycosyltransferase 37 19 Op 5 . - CDS 34597 - 35322 952 ## COG1922 Teichoic acid biosynthesis proteins 38 19 Op 6 . - CDS 35326 - 36600 1240 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 36670 - 36729 3.6 39 19 Op 7 . - CDS 36768 - 37865 863 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC - Prom 37933 - 37992 12.5 + Prom 37872 - 37931 11.2 40 20 Tu 1 . + CDS 38038 - 38427 516 ## COG0615 Cytidylyltransferase + Term 38449 - 38478 2.1 41 21 Tu 1 . - CDS 39028 - 39651 555 ## LAC30SC_10090 hypothetical protein - Prom 39691 - 39750 6.7 + Prom 39620 - 39679 8.2 42 22 Tu 1 . + CDS 39758 - 41011 1303 ## COG0477 Permeases of the major facilitator superfamily + Term 41029 - 41068 7.0 - Term 41017 - 41056 3.2 43 23 Tu 1 . - CDS 41111 - 41812 994 ## COG2188 Transcriptional regulators - Prom 41845 - 41904 3.1 - TRNA 41944 - 42015 60.4 # Gln TTG 0 0 + Prom 41744 - 41803 8.8 44 24 Tu 1 . + CDS 41971 - 42159 153 ## - TRNA 42023 - 42104 64.5 # Tyr GTA 0 0 - Term 42175 - 42208 2.4 45 25 Tu 1 . - CDS 42216 - 43124 1279 ## COG0039 Malate/lactate dehydrogenases - Prom 43155 - 43214 13.5 - TRNA 43235 - 43309 61.0 # Gln TTG 0 0 - Term 43302 - 43339 4.1 46 26 Op 1 2/0.000 - CDS 43366 - 44529 1211 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase 47 26 Op 2 1/0.000 - CDS 44529 - 45737 1348 ## COG1257 Hydroxymethylglutaryl-CoA reductase 48 26 Op 3 . - CDS 45734 - 46900 1378 ## COG0183 Acetyl-CoA acetyltransferase - Prom 47037 - 47096 6.5 + Prom 47048 - 47107 8.8 49 27 Op 1 . + CDS 47138 - 47527 372 ## LCRIS_01770 cell wall-associated hydrolase 50 27 Op 2 . + CDS 47445 - 47699 122 ## LA2_10210 aggregation promoting protein + Term 47719 - 47756 1.0 - Term 47707 - 47744 4.0 51 28 Tu 1 . - CDS 47772 - 48056 242 ## gi|309803831|ref|ZP_07697916.1| hypothetical protein HMPREF9214_0363 - Prom 48126 - 48185 10.5 - Term 48182 - 48235 14.0 52 29 Tu 1 . - CDS 48336 - 49709 1626 ## COG1114 Branched-chain amino acid permeases - Prom 49737 - 49796 5.3 53 30 Op 1 1/0.000 - CDS 50099 - 51253 1621 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 51277 - 51336 3.5 54 30 Op 2 . - CDS 51364 - 52203 771 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen - Prom 52238 - 52297 6.8 55 31 Tu 1 . - CDS 52598 - 54673 2321 ## Apre_0464 hypothetical protein - Prom 54906 - 54965 8.2 56 32 Op 1 42/0.000 - CDS 54975 - 55769 775 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 57 32 Op 2 25/0.000 - CDS 55769 - 56440 272 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 58 32 Op 3 . - CDS 56433 - 57344 955 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 57404 - 57463 7.2 - Term 57443 - 57492 10.2 59 33 Tu 1 . - CDS 57507 - 57998 567 ## LPST_C0132 integral membrane protein - Prom 58062 - 58121 7.8 60 34 Op 1 10/0.000 - CDS 58138 - 58596 647 ## COG0691 tmRNA-binding protein 61 34 Op 2 . - CDS 58599 - 60341 1233 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 62 34 Op 3 . - CDS 60338 - 60874 155 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 - Term 60907 - 60939 -0.4 63 34 Op 4 . - CDS 60945 - 61163 146 ## LAC30SC_02310 preprotein translocase subunit SecG - Prom 61213 - 61272 11.9 64 35 Op 1 . - CDS 61297 - 62595 2135 ## COG0148 Enolase 65 35 Op 2 13/0.000 - CDS 62646 - 63401 870 ## COG0149 Triosephosphate isomerase 66 35 Op 3 26/0.000 - CDS 63419 - 64633 1681 ## COG0126 3-phosphoglycerate kinase - Prom 64681 - 64740 2.2 - Term 64672 - 64708 8.7 67 36 Op 1 5/0.000 - CDS 64742 - 65758 1250 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 68 36 Op 2 . - CDS 65815 - 66846 856 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 67090 - 67149 75.9 + TRNA 67073 - 67144 40.0 # Pseudo CCG 0 0 + Prom 67073 - 67132 76.1 69 37 Tu 1 . + CDS 67359 - 67943 701 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Term 67958 - 67998 5.1 - Term 67938 - 67991 11.1 70 38 Op 1 . - CDS 68052 - 69308 1283 ## COG0714 MoxR-like ATPases 71 38 Op 2 . - CDS 69324 - 70817 1282 ## Mahau_2494 von Willebrand factor type A 72 38 Op 3 12/0.000 - CDS 70810 - 71754 1010 ## COG1481 Uncharacterized protein conserved in bacteria 73 38 Op 4 12/0.000 - CDS 71754 - 72788 998 ## COG0391 Uncharacterized conserved protein 74 38 Op 5 . - CDS 72801 - 73676 894 ## COG1660 Predicted P-loop-containing kinase 75 38 Op 6 7/0.000 - CDS 73728 - 76544 2824 ## COG0178 Excinuclease ATPase subunit 76 38 Op 7 . - CDS 76572 - 78569 2080 ## COG0556 Helicase subunit of the DNA excision repair complex - Term 78579 - 78608 0.5 77 39 Op 1 1/0.000 - CDS 78627 - 80354 1994 ## COG1109 Phosphomannomutase 78 39 Op 2 . - CDS 80371 - 81297 532 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 79 39 Op 3 . - CDS 81317 - 82336 1230 ## COG0240 Glycerol-3-phosphate dehydrogenase 80 39 Op 4 10/0.000 - CDS 82373 - 83206 954 ## COG0682 Prolipoprotein diacylglyceryltransferase 81 39 Op 5 . - CDS 83222 - 84160 1054 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 82 39 Op 6 . - CDS 84164 - 84460 210 ## gi|259501055|ref|ZP_05743957.1| hypothetical protein HMPREF0520_0565 83 39 Op 7 6/0.000 - CDS 84477 - 85475 1129 ## COG1186 Protein chain release factor B - Prom 85502 - 85561 4.3 - Term 85588 - 85618 1.3 84 39 Op 8 . - CDS 85635 - 86825 1392 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) Predicted protein(s) >gi|308170256|gb|AEHR01000013.1| GENE 1 196 - 654 429 152 aa, chain + ## HITS:1 COG:no KEGG:FMG_0943 NR:ns ## KEGG: FMG_0943 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 152 295 446 446 230 98.0 1e-59 MADSIIKLREQGINSITQLDDLIKKSADDRQDLLDKIKKIETEMKSLSQDMENINTINKY REIYKYHKKNPEDKQFAEEYYSELSVYKIAAKEILENYKKLPNTKEILSNLDKLQEKQNT LMQEYSLNKEQFSDLVQYRKNYENYYGKEIER >gi|308170256|gb|AEHR01000013.1| GENE 2 683 - 1813 784 376 aa, chain - ## HITS:1 COG:no KEGG:CLM_2298 NR:ns ## KEGG: CLM_2298 # Name: not_defined # Def: DEAD/DEAH box helicase domain-containing protein # Organism: C.botulinum_A2 # Pathway: not_defined # 1 348 484 815 846 116 29.0 2e-24 MNEVDFWNLAGRAGRLSKDLAGNIFCVNLYNQQGYWNDDSKIKILRDKNIEETKPIILRK NNKNLYKNIANYYTRNDYTNKKLSEDDKKIIEMYGNILLYHDTVNSDSVLKDRFIDSGNN SLDVLKKIRNENSVPGNILAKSIDIDIGIQNRVFKGNKEKLPTETTYEGCYKVLRLLCEE YDWLSTESKGNYPMIRSKEQLSYYATLMEGWINSKPLKYLIQKTISYYYNSGESKEISLR KDGKIYYMKFDKNNALHINTLINNLIKNLENNIKYKIKTYVSNYQSILRSCGVDLECDWE EYIDYGTTNPQIIDIQNLGFSRTMAIFLMDKYYNLFIRNDIGEIIDIDDEKLRTSIDKKK YDEEYKELNILFEWEK >gi|308170256|gb|AEHR01000013.1| GENE 3 1833 - 3260 1203 475 aa, chain - ## HITS:1 COG:no KEGG:Ethha_1804 NR:ns ## KEGG: Ethha_1804 # Name: not_defined # Def: helicase domain protein # Organism: E.harbinense # Pathway: not_defined # 14 455 18 491 910 179 32.0 3e-43 MNNFIDYISSKAYTDDYLINLIYNLEKNFCNKLLDQDYKIDLSNKEKCDLMRFADILCRS SKDEHKNLSLRIVSLVYEFEELLEDKFIKLSIINVLTKLGNFPSINLMGIKDENTGIDEI DLDLIVKRVYNESPIKEIFTDEQLKIFNELQTNNHFSFSGSTSFGKSFIFEAFTKYLIDE HNQSDNIAFIVPTKALINQVSYKIRKLVKSYSYKVINSPEIPKVIKRQDGKYIFVFTPER LITYFLDTTNPKIDYLFVDEAHKLLSVKDTRTPLMYHALVMAKRKSINIFFASPNIPNPS VFLELVNNTPDESHAVKVESVSQNRFFVNCHTDSSYMISDYGKDILFPKLNFSGNIITDL GIILNTFSNGRQSIVYCNTIEKTILTAFEFAKTLEEVRDENIDKLIDIINEKVHEQYYLR YCLKKGIAYHFGGIPEEIKIKVEELYKLGVIKTIFLYFNSIRGSKFARKKHFYFK >gi|308170256|gb|AEHR01000013.1| GENE 4 3257 - 4069 639 270 aa, chain - ## HITS:1 COG:no KEGG:CLM_2299 NR:ns ## KEGG: CLM_2299 # Name: not_defined # Def: hypothetical protein # Organism: C.botulinum_A2 # Pathway: not_defined # 4 268 39 298 300 153 37.0 8e-36 MCPINARKFDYNQISLVLVDSVIDYAISKKNITKYQNKPGRLSQMARKKFKECLNNTGEL GELLLYCFLEGHLNAPKILTKMEMKTSNSLYVNGSDGVHLLNNGDGTYKLIFGESKLYKK LSDALNAAFNSINDFINENNPNGKNKTGINYEKDLISSNIENCEISDEDKDVLELLIYPT KNEKKIRIDDAFSIFIGYETDISNETRSCTSNNFSDEVKKKILLDLDKYENKIYEKIKDN NLLGHTFFVYIIPFTDIDITRRKILKDILT >gi|308170256|gb|AEHR01000013.1| GENE 5 4625 - 5281 735 218 aa, chain - ## HITS:1 COG:no KEGG:MGAS10750_Spy1699 NR:ns ## KEGG: MGAS10750_Spy1699 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 218 1 218 218 287 91.0 2e-76 MEYKDIRENLEEMMNDNYKDFIKALVSIEKGVNDEKALEEVYVLFMIKDTTGLLNDDFDY MIDDMKEQGKIVENSNEIEEKDDLINLVGNIAGEVENLERENSNGEKFKVSNFSIISKDD NGNKIYTNCSTHGDKTKDLENLKQGDFVKIFGQVKTRIDNNGKEHKNVRILSSKLLKAKE QVKSQDKDKKSILGQIKSFKTDDKVKSNKKDYSKGTER >gi|308170256|gb|AEHR01000013.1| GENE 6 5604 - 6200 583 198 aa, chain - ## HITS:1 COG:no KEGG:MGAS10750_Spy1698 NR:ns ## KEGG: MGAS10750_Spy1698 # Name: not_defined # Def: superfamily II DNA and RNA helicase # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 198 2254 2454 2547 325 94.0 6e-88 MTNTHTFKLLVKAEYFGEFSNSTDGNITRLDNAIEKMPSRLERLNQNLENYKESLENAKV ELTKSFEKADELSDKTLRLAEINKLLDMGEVEELENQSPLLEDLKRAIVDYSNYEFSESN SYEDFDKLYPDLSHIGLAYTESKHSIQYEVNLEEKTWTQYLDNVAIRTESFVDEDISNSQ AIKDMTEAIKMSSFDDLV >gi|308170256|gb|AEHR01000013.1| GENE 7 6199 - 6438 149 79 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLYETCKSKFLYLPMTLLSFIFTFFISSNSFSPASFLSKILFVPRLIEVNLLSLSPNFS TLSIFYLTAFISISVFNIL >gi|308170256|gb|AEHR01000013.1| GENE 8 6393 - 6644 300 83 aa, chain - ## HITS:1 COG:no KEGG:MGAS10750_Spy1698 NR:ns ## KEGG: MGAS10750_Spy1698 # Name: not_defined # Def: superfamily II DNA and RNA helicase # Organism: S.pyogenes_MGAS10750 # Pathway: not_defined # 1 83 2106 2188 2547 139 96.0 4e-32 MTSKTPVRVAEDVDEASLSYSEIKALATGNPLIKEKMDLDNEVTKLKMLEANYKSDKYKL EDKVNKYYPQSILKTEMEIKAVK >gi|308170256|gb|AEHR01000013.1| GENE 9 6731 - 7060 427 109 aa, chain - ## HITS:1 COG:no KEGG:SPAP_0865 NR:ns ## KEGG: SPAP_0865 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_AP200 # Pathway: not_defined # 1 99 1 99 257 179 95.0 3e-44 MNFDYFYNRQSEMYNFIRLPIVLMEDEIFESISIEAKVLYSYMLNRMGLSYKNGWIDEDG KVFIYYIIESIKDQFNCASEKANKLIAELDIKSGIGLVELFVKVMKMIR >gi|308170256|gb|AEHR01000013.1| GENE 10 7219 - 7482 223 87 aa, chain - ## HITS:1 COG:no KEGG:SPN23F_09511 NR:ns ## KEGG: SPN23F_09511 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_ATCC700669 # Pathway: not_defined # 17 87 1 71 97 129 91.0 5e-29 MIDKSNKKFGINLLSCMPPPFMKKDKEVYDKVCEYLSPHLNKDMEVLELACGFRVIIVIE ANSYVNTRSSKLLPKFKTQKINSWCAA >gi|308170256|gb|AEHR01000013.1| GENE 11 7627 - 7941 287 104 aa, chain - ## HITS:1 COG:SP1029 KEGG:ns NR:ns ## COG: SP1029 COG2265 # Protein_GI_number: 15900900 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 104 441 543 543 185 92.0 2e-47 MHVETIALLSKLDVDKHISVEIELDEMGLTSAESKATYAQIKEYVWNKFQLKVSILYIAH IKRKCGIELLEHYNKSKKEKQIIPQCTPEKEEAIMDALRHFKMI >gi|308170256|gb|AEHR01000013.1| GENE 12 8059 - 8316 402 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804715|ref|ZP_07698780.1| ## NR: gi|309804715|ref|ZP_07698780.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF0522_1155 [Lactobacillus iners UPII 143-D] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF0522_1155 [Lactobacillus iners UPII 143-D] # 1 85 1 85 85 134 100.0 2e-30 MYIIRVLLPVILISILVVATINIAKKKFKNHNSDEKQEENHMSEGMAVGMCLGTAASIAL DIGDIAIGMSIGMLLGMIVGMNFKK >gi|308170256|gb|AEHR01000013.1| GENE 13 8399 - 8833 354 144 aa, chain - ## HITS:1 COG:no KEGG:SSA_0253 NR:ns ## KEGG: SSA_0253 # Name: not_defined # Def: CAAX amino terminal protease family protein, putative # Organism: S.sanguinis # Pathway: not_defined # 16 144 76 204 204 117 49.0 1e-25 MILVYLSVSFLSLYMVKNIDTATSEFHGLGVSGILPALLYAIFNTALPEEIFFRGFILKR IPSKFGFYAANLIQSVLFGLLHGTMFFSIAGMIKAMIIIVLTGAIAFCMGYVNEKKAGGS IIPSWCLHVLSNAFASFVALFSIL >gi|308170256|gb|AEHR01000013.1| GENE 14 9055 - 9381 290 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804729|ref|ZP_07698794.1| ## NR: gi|309804729|ref|ZP_07698794.1| hypothetical protein HMPREF9213_0084 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0652 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0709 [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF9213_0084 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0652 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0709 [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners UPII 143-D] # 29 108 1 80 80 162 100.0 9e-39 MSSLCDCDYCMLYQSKSKAVYPELADWLMQHGIDIGKPYETMWLDPDENGVVYYSGVQYI VFGTCEEQFESGVGDIIIRCVYSFPTPLGIEGDFFILEAYPMYLCLDR >gi|308170256|gb|AEHR01000013.1| GENE 15 9609 - 9896 304 95 aa, chain - ## HITS:1 COG:all2689 KEGG:ns NR:ns ## COG: all2689 COG0286 # Protein_GI_number: 17230181 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Nostoc sp. PCC 7120 # 1 58 1 58 145 81 63.0 3e-16 MAVKKSELYSLLWEACNKLRGGVEPSRYKDYVLVLLFFKYVSDRYKGQPFAEFTVKEGTS LNNTTMIVSSGVGNSIIPVRFNNRPEIVVVTMKSE >gi|308170256|gb|AEHR01000013.1| GENE 16 9950 - 10147 208 65 aa, chain - ## HITS:1 COG:no KEGG:bpr_I1915 NR:ns ## KEGG: bpr_I1915 # Name: not_defined # Def: DNA-binding protein excisionase family protein # Organism: B.proteoclasticus # Pathway: not_defined # 8 65 6 63 63 72 63.0 8e-12 MSEIIKGEKWIGTKEAAEYLGVQPATIRDWIRKGKDIPRKKIGKAWKFKLSELEEWIASG KSTME >gi|308170256|gb|AEHR01000013.1| GENE 17 10480 - 11829 1652 449 aa, chain - ## HITS:1 COG:SPy1346 KEGG:ns NR:ns ## COG: SPy1346 COG2265 # Protein_GI_number: 15675282 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 446 13 461 462 419 48.0 1e-117 MEKNQIVELEITDLSYEAMGVAHYEGLTIFVNNALLGEIVQAKILKIKKNFAFAKVEKFL QKSSDRMDVPLRQWVQTGLAALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPES TAYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVP AYDEIKHNGEVRYLEIRRSKANGQLMIVLVCLHKSFKNLDAVVQAIQSLDNVACVILNHN PHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTS DDVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEEL MPQWANEGLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQIFQAAG YDFDCIDPVDMFPQTPHVECVVLLTKTHR >gi|308170256|gb|AEHR01000013.1| GENE 18 12185 - 13564 1364 459 aa, chain + ## HITS:1 COG:FN1422 KEGG:ns NR:ns ## COG: FN1422 COG1757 # Protein_GI_number: 19704754 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Fusobacterium nucleatum # 14 453 4 444 473 277 38.0 4e-74 MKHKVTFNEAICILLALLFILGISVIKLGIAPEVPVLFTICLFIFWIKFFHGCSWQSIQD GIKEGIGVAIIPIFIFILIGALISLWIKSGIIPSIMYLGFHLLNGNYFIPSVFLVCTIIG VAIGSGFTTISTIGIALFGIGISMKANPGLVAGAIISGAVFGDKMSPLSDSTNLASAVAE SELFAHIKNMLWSTLPAFFCSLLLFTILGHGGAMNAARIETLSHILKSHFMISWWTIIPI IFMVLCAWKKIPAIPTLFLNITISIIIIFIQNPHQSIASLNQIIVNGYVAKTNDAAFNAL LSRGGIASMMETVALIISTLSLGGLLMKFNIVQSAMSPLVAKLKTPGSLIIATILSGIGI NLLVGEQYLSVILPGRAYKSAYTKLCLSSLALSRVLEDGGSVINYLIPWGVAGAFAASTL GVPVLTFLPFTFFSLFSPIFSIISGISGIGLKRIHGIMQ >gi|308170256|gb|AEHR01000013.1| GENE 19 13639 - 14238 444 199 aa, chain + ## HITS:1 COG:SPy0358 KEGG:ns NR:ns ## COG: SPy0358 COG0670 # Protein_GI_number: 15674509 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pyogenes M1 GAS # 17 189 11 185 229 92 36.0 6e-19 MNNFENIFQTRRSIVDNVALNRFLTKMYSIVALAILVSAATAYTVLHFFANQFFNALSQN HALSFVLLILPFALIIGTSFSKNPILSFVLLMLTAMVYGLTFSIICLAFTQTSITAAFLS SSAVFITMAFIGTTTKKDLSNLGSYASAALIGLIVATIINMFLRNPMVTYIFSYIAVVIF TILTAWDAQKNEEYLHSKS >gi|308170256|gb|AEHR01000013.1| GENE 20 14210 - 14353 75 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312875398|ref|ZP_07735402.1| ## NR: gi|312875398|ref|ZP_07735402.1| putative membrane protein [Lactobacillus iners LEAF 2053A-b] putative membrane protein [Lactobacillus iners LEAF 2053A-b] # 1 47 191 237 237 79 100.0 1e-13 MKNIFIQNHDEIATTSLAIIGALTLYLDFINLFIQFLQIFGFSDNRR >gi|308170256|gb|AEHR01000013.1| GENE 21 14396 - 14977 600 193 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 45 190 51 193 194 117 42.0 2e-26 MAMASCVFARKNSKHSSTLRTSKVSLQKKISRPYPDPTDLVKEGEWKKSSEKKAYPNLKK VKKLVIRVSIKGNRVYLLDNNKVIYTMLASCGKYKNGKSLTPLGKYQIIGGRGDKFFNSK LNEGALNWVSWTENCVYLFHSVPICKNQKINKSEAAKLGKQPASNGCIRLSLPDSKWLMD NVPTGTPVVIKTH >gi|308170256|gb|AEHR01000013.1| GENE 22 15156 - 16064 1179 302 aa, chain - ## HITS:1 COG:lin1865 KEGG:ns NR:ns ## COG: lin1865 COG1597 # Protein_GI_number: 16800931 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Listeria innocua # 1 300 1 293 310 328 52.0 5e-90 MTKRARLIYNPVSGHEQNIRNVASILDILEQAGYEASAFRTTAEPFSAQKEANRVGKDGF ELIVGAGGDGTINEIVNGIAPLDHRPQMAVIPSGTTNDFARALKIPRDDLVAAARLVLQG KTRKMDIGKAGDKYFMNIAASGSLTELTYGVPSEWKSILGYTAYLLKGAEMFPKISNNKM RLTYDKGVYEGDLSMFFLGMTNSIGGWEQVMPDAQLSDGLFQLIVVKTSNPIDILRLMAM AINGNHVKDPNIIYTKTRSLKVELLDNSHSKKKIAVNLDGDIGGYLPMSFTNLQQHIEFF VG >gi|308170256|gb|AEHR01000013.1| GENE 23 16084 - 17514 1822 476 aa, chain - ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 1 476 1 476 476 582 60.0 1e-166 MNFKSTIGLEVHFELKTKSKIFSPSPVTYGAEVNTATNVIDWGMPGVLPMVNKEVYRLGL MVALATNSQISPVTHFDRKNYYYPDNPKAYQITQFFQPLARNGYIEVEVNGKKKRIGIHE MHIEEDAGKNTHGTNGYSYVDLNRQGVALLEVVSEPDMETPEEAYAYLEKLRQIVQFTGA SDVKMEEGSMRVDTNISIRPAGQKELGTKVEMKNLNSFQHVRQSLAYEEKRQAAVLLSGG QVQLSTRRFDESTGKTVLERVKEGDADYRYFPEPDIAPYHIKQSWIDEIKASLPESPFDR RKRYVNEYGIKEYDADVILQTKESSDFYDATVKAGADATLAANWLNTQVNGYLNEKQVDL DEVKLTPEHLAQIIKMIQDGTISSKIAKKVFQESIEHGTEPKKYVADKGMIQLSDLSVLA PLVAKIVDNNPQSVEDFKNGKDRAIGFLVGQIMKETHGKANPKVVNELINKELQSR >gi|308170256|gb|AEHR01000013.1| GENE 24 17518 - 18957 1791 479 aa, chain - ## HITS:1 COG:SPy1771 KEGG:ns NR:ns ## COG: SPy1771 COG0154 # Protein_GI_number: 15675615 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Streptococcus pyogenes M1 GAS # 1 474 1 481 488 519 54.0 1e-147 MNYLNETIESLNKKLKNKEITAEQLTQDTLAKIKELEPKLNAMITVIDDAKPAENLDFSN ELAGIPIAVKDNIITNNVKTTAASHILYNYMPVYDATVVSKLKAAKMTIIGKTNMDEFAM GSSSENSYFGAPKNPWDLTKVTGGSSGGSAAAVAGGEVIAALGTDTGGSIRQPAAFNGIF GIKPTYGRVSRWGLIAFGSSLDQIGVMTKRVQDSAKILNVLSGADDHDATVSEREVPDFT KALNQDVKGLRVAVPEEYFGEGISEKVKALIKEQIKVLEDNGAIINKVSLPHTKYVIPDY YIIASSEASSNLQRFDGIRYGYRSKDAKNLLDVYVKSRSEGFGDEVKRRIMLGSFALSAG SYDRFFRQAAKVRTLICRDFEKIFEENDVIVGPTTPTPAFGLNSKTKDPLEMYANDILTI AANLAGVPAASVPAGLVDGMPVGLQIMAKRFDEESIFRVADFIERSNKFYEKKPTGLED >gi|308170256|gb|AEHR01000013.1| GENE 25 18957 - 19259 353 100 aa, chain - ## HITS:1 COG:SP0438 KEGG:ns NR:ns ## COG: SP0438 COG0721 # Protein_GI_number: 15900356 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 100 1 100 100 78 44.0 4e-15 MKITKDEIIHVAKLSRLEFNAKEIDKFTEQMGEIINMANQLGEVNTDGVEETVQVVDRDT VFRADEPEHWQSKAELMKNVPDKVDGFIKVPVIIDKDDNA >gi|308170256|gb|AEHR01000013.1| GENE 26 19270 - 20385 1187 371 aa, chain - ## HITS:1 COG:lin1869 KEGG:ns NR:ns ## COG: lin1869 COG4851 # Protein_GI_number: 16800935 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Listeria innocua # 56 368 57 370 371 192 33.0 1e-48 MGLLIFAFAINLTACGNLKNSNLTNNPANTNGKQKTYQTTVTDKNGYNVLLKDGQYLISP TNGITASNNDNNVDNRSLEVGLLNISHDLFSTDKYVFQEGQVLTPRQVNIWLSRYSKHNK QGLNYKKSKKYSPIILNQIFEQDFLVKSGSSYKLGGISLGLALNSVDYYTKVKDGPEYHV NIKKNQQLAYGKKVAYTLIKRLRKISALKHIPILIGLFQKTGRDSLIGGNYLAYSIVDTN SSKINEWKSVDYSSQVLPTIGDTKPINSTDAASFSDFKAAIQGYFPNISGVIAKVHYQNK HLKQMNISITTQFYGYAQIESFSRLTLSVAKKYLPNNVPIEIRIESVNNLQATITKNDAD DSYYVHVFSGE >gi|308170256|gb|AEHR01000013.1| GENE 27 20406 - 22424 2077 672 aa, chain - ## HITS:1 COG:lin1870 KEGG:ns NR:ns ## COG: lin1870 COG0272 # Protein_GI_number: 16800936 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Listeria innocua # 20 667 14 663 671 623 49.0 1e-178 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVDYNVELKID GLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKIDIEVRGECYMDKAT FAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPPETITSQHQA ILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDLALQAKLGN TVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVSRAVLHNPD LLRQKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYEIPKICPSCNQNLVHLKDEV ALRCINPMCPAQVEEGITHFASRQAMNIVGLGPKIVRQLIALHLVNDIADLYFLSAAQLA KLDHFKDKSIQNLLNAIENSKQNSVELLLFGLGIDHVGAKAARLIAQKFHDLNTIRECSI ADLMQIDTIGQTIAESMVKYFEQQSVKELMDQLQIAGVNFKYLGASDTQSIEDNFFKGKN VVLTGKLAHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTE DEVIAKLNSQKE >gi|308170256|gb|AEHR01000013.1| GENE 28 22438 - 24666 2219 742 aa, chain - ## HITS:1 COG:SPy1267 KEGG:ns NR:ns ## COG: SPy1267 COG0210 # Protein_GI_number: 15675225 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 6 741 4 771 772 739 50.0 0 MNEESMLAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAI TFTNKAASEMRERVKQLLDSDADSIWMSTFHALCVRILRRYAEKIGYANNFSIADTAEQL TLIKRILKELNIDSKKFDPKSLVNAISNAKNDLLDPEEYAKQVSNEYEKKIAIVYREYQK NLQHDCIMDFDDLIMQTLVLFKSEPEVLHYYQNKFWYILVDEYQDTNQAQYELCYLLAQQ HKNICVVGDADQSIYGWRGANMQNILNFEQDYRNDNCNTIKLEQNYRSTGHILNAANAVI KNNKNRKPKKLWTNSGEGSKVNYYRASTGNDEAIFIIGKINKEIKENGYKYSDFAILYRT NAQSRNIEEAFVKSNIPYKIVGGHKFYDRKEIKDIMAYLRLVANPADYMSLHRIINAPRR GIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIMKDFGRKLEEMIIFAKNNTV TELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQFDDNYEANEDGAKAVDDFL AEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGMEEGIFPLARAQSDNSELEEE RRLAYVGITRAKKQLYLTNAIHRMLYGHYQNNNASRFISEINDIDLADISPVADNSFSSF ANKNTNSHSVQHEKPVIAKKAAGAIGADKKTWSVGDQVEHKAWGIGVVTKVNGSGEDMEL DIAFANLGVKRLLAAFAPIKKV >gi|308170256|gb|AEHR01000013.1| GENE 29 24768 - 25379 324 203 aa, chain - ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 8 201 11 204 209 148 37.0 9e-36 MKKKYCKNQLDFMLIKVLLILLTFILCLLISRHIHHQVQPPINNDIDLIQKKAFIKKMVP LAQAEYQKYPIFPSVTIAQACLESDYGRSSLSKKYNNLFGMKGTDPNRTKLMETKEFVNN KWIVIKARFCVFNSMEECVKKHTLLLVNGTTWNPRQYQHVLNSTTYIQQAESLQKDGYAT DPSYSKSLLKIIDEFKLYQYDYR >gi|308170256|gb|AEHR01000013.1| GENE 30 25382 - 26029 707 215 aa, chain - ## HITS:1 COG:no KEGG:LBA1940 NR:ns ## KEGG: LBA1940 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 13 214 1 201 201 176 50.0 5e-43 MTFFFLLGDRCIMANKKINTIAIFSVFVAIVMLQTFIPCLGYIRFFPALPAITTLPLTVT VFGILMGPKMGGFLGFFWGALSLFRAYTQPADLVSIMLFQNAVIAIIPRFLAGVVPGLIG KLWQQRHSTRNYLISVAAGVASTLTNTLMVILFTSIFYNHSSKLMSCLGYADTSKSLIIV LLIALSFNSACEAIFTGILTPLIVVPLKKVLSKRL >gi|308170256|gb|AEHR01000013.1| GENE 31 26207 - 27349 1753 380 aa, chain - ## HITS:1 COG:SPy2206_3 KEGG:ns NR:ns ## COG: SPy2206_3 COG0516 # Protein_GI_number: 15675939 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pyogenes M1 GAS # 99 379 5 283 286 395 76.0 1e-110 MSSWETKFAKKGLTFDDVLLIPAESHVLPNEVDLSVKLADNIKLNLPFISAGMDTVTESS MAIAMALQGGMGVIHKNMSIVAQAGEVATVKGVMLSGNFTRAAVDEENKLLVAAAVGVTS DTFQRAQALLEAGANAIVIDTAHGHSAGVLRKIKEIREHFPKATLIAGNVATAEGTKALF DSGVDIVKVGIGPGSICTTRIIAGVGVPQITAIYDAASVAREYGKTIIADGGIKYSGDIV KAIAAGGNAVMLGSMFAGTTETPGQIITDGDKKYKVYRGMGSIGAMAQSHGSSDRYFQGG VNEANKLVPEGIEARVEYKGDVSDTIFQLIGGLRSGMGYVGARNIDELINKAQFVQMTNS GLRESHPHDVQITKAAPNYK >gi|308170256|gb|AEHR01000013.1| GENE 32 27497 - 30160 2770 887 aa, chain - ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 2 884 7 885 893 955 59.0 0 MQQEIYQQKSEDVIKQLKTSINTGLSLQQVSDRLKTDGLNELVGKQKRGLFLRFIDQFKD FMIIVLIVAAILSGVVANEWTDAAIIMFVVLLNAVLGIIQEARSEAAIEALKQMSTPNAH VRRDGQVVEIPSTQLVKGDIVLLEAGDVVPADLRLVLAKNLKIEEAALTGESVPVEKKSK VIEADDVALGDRINMAYSNTNVTYGRGEGVVVATAMDTEVGKIATMLNNADETDTPLKAN LNQLGKTLTLMILGICAFVCVVGIFTKQGTMPFDKLAIEMFLVAVSLAVAAIPEGLPAIV TIILALGTQNMAKHKAIVRKLPAVETLGATDIIASDKTGTLTQNKMTVEKVFYNDTYHCD KLEDKDNLAIKIMTLANDTKITDNNSLLGDPTETALIQYALDSKWNVVDYLANNKRVQEV PFDSDRKLMSTVHQQADGKYFVAVKGAPDELLKRAVSLWHDDKIVDLDASAKAKILAANN DMAKNALRVLGLAYKVVDNKFTEVNSATVEQNLIFVGLVGMIDPERPEAKAAVAKAKSAG IRTIMITGDHQVTAAAIAKRLGIIGEDDTNCVITGAELDKISDTDFVKCVANYKVYARVS PEHKVRIVKAWQKNGKIVAMTGDGVNDAPSLKQADIGIGMGITGTEVSKGASDMVLADDN FATIVEAVRQGRKIFSNIQKAILYLMSCNVGEVLTVFMMTMLGWEILAPVQLLWINLVTD TLPAVALGVDPVERDIMKRKPRGKKSNFLSAVGISIVYQGILEGILVLGVYQIGLHIGPH IDNYKLLHGDALTMAFLTLGLIQLFHAFNSKFITKSIFCKDTLKNKWFNLAIIVSAIIMS AVEIPGLTSLFKVTELNITQWFVVLTAGILMIAIVEIVKLFQRNAEK >gi|308170256|gb|AEHR01000013.1| GENE 33 30317 - 31180 1080 287 aa, chain - ## HITS:1 COG:lin1078 KEGG:ns NR:ns ## COG: lin1078 COG0171 # Protein_GI_number: 16800147 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Listeria innocua # 3 275 2 274 274 361 66.0 1e-100 MRDLQKKIIAYEQVAPKIDAKKEIRRSINFLKEYLLKNPGLKTYVLGISGGQDSTLTGKL AQMAISELRAETGDNEYQFIAVRLPYGVQKDASDAADAVAFQHADQDLIVNIKSAVDATV KSLEESGIEISDFNKGNIKARQRMIVQYAIAGANKGAVIGTDHAAENISGFFTKYGDGAS DILPIFRLNKRQGKALLQELNCPKHLYQKAPTADLEEKRPALPDEQALGVSYDKIDDYLE GKELAKVDAERIEYLWTRSEHKRHLPITIFDDFYKKIIKMSRLTCQH >gi|308170256|gb|AEHR01000013.1| GENE 34 31183 - 32661 1721 492 aa, chain - ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 4 492 7 494 495 700 69.0 0 MFNPELDLDDSLILHTDLYEINMMYTYFKKGISERKAVFEVYFRKEPFGNGYALFAGLSH MIDYIKKIHFAESDLQYLKENENYDDDFISYLRNLKINLTVRSAQEGELVFANEPIVQVE GPLAQCQLVETAILNIINFQTLIATKAARVKIAVGDQAIMEFGSRRAQETDAAIWGTRAA YIGGFDATSNVRAGKLFGIPISGTHAHSLVQAFGNEYDAFMAYAQTHKDCVFLVDTYDTL RSGVPTAIKVADEMGDKINFLGVRIDSGDMAYISKKIRKQLDDAGYPNAKIFASNDLDEK TILNLKMQGAKIDVWGVGTKLITAYDQPALGGVYKLVSIEHSDGKMYDTLKISSNAEKVS TPGKKQVWRISANSEKKNEGDWISCWNEDPRKLDALYMFHPQYTYINKIVTNYTAYPILK DIFVDGKQVYVEPSLQEIKKFAMTNLDGLWDEYKRSLNPQEYPVDLSQALYDHKMHLISK IRTQIIKRECED >gi|308170256|gb|AEHR01000013.1| GENE 35 32712 - 33410 832 232 aa, chain - ## HITS:1 COG:FN1241 KEGG:ns NR:ns ## COG: FN1241 COG3774 # Protein_GI_number: 19704576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannosyltransferase OCH1 and related enzymes # Organism: Fusobacterium nucleatum # 1 178 1 176 243 130 41.0 3e-30 MIPKIIHYVWVGGNPKPKNIQKCMKTWSKHLKDYQIIEWNESNFDIHENKYVEQAYKAKK WAFVSDYIRAKAIYEMGGIYLDTDVLVLDDLHELLDNRAFVGFENIDNPFTAVFGAEPKH PLIKDMLDYYDDRNFEFDANDQLKGVNTVSVSDILKKVYGAKPNNLEQTIKDGVHVYPDG ILCNPSGQSKTIHVFTGTWMEGKKSLKRKIITMLKVNIKTKFQAKVYAKLFR >gi|308170256|gb|AEHR01000013.1| GENE 36 33473 - 34561 1017 362 aa, chain - ## HITS:1 COG:BS_ypjH KEGG:ns NR:ns ## COG: BS_ypjH COG0438 # Protein_GI_number: 16079303 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Bacillus subtilis # 63 352 71 375 377 89 29.0 1e-17 MKVLHINAGLENGGGLYHIINLLSAAKMRNKDYELLTLAEGPVKAAAEEAKIKVTSLESN SRYDIKVFRRLIDYINQNNFDIVHTHGPRANLFLYLIHKKIKAKWVVTVHSDPLLDFANK GLIGKIFTKLNILALRHADQIFAITQRFADLLTDQVKIDPKKIIVIYNGIFFKNQIPVKL THDKFNIINVARCEKIKGQDLLLKALHAADDQRLMLHIAGDGSQLPHLKELAKELKLEDQ VIFHGFLSHTELTKLYQKMDLAVLSSYSESFPLVLLEAGDNELPLLSTTVGDIKKLIPDD EHGFIVNIGDEVALSDQLVNISKLSKKQLQMIAKKEKKYLANTFSIYNQLAEIDQGYQLL MK >gi|308170256|gb|AEHR01000013.1| GENE 37 34597 - 35322 952 241 aa, chain - ## HITS:1 COG:BS_tagA KEGG:ns NR:ns ## COG: BS_tagA COG1922 # Protein_GI_number: 16080628 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Bacillus subtilis # 1 241 1 240 256 181 39.0 8e-46 MKKVNVLGVEFDNLTLLEFKKVFLQRIKDQKSTLIVTANPEIVMQANNDAAFMNLIKNDA DFITADGIGIVLAGKIQHTPVKERVTGYDMFVWFLKIANEQKKRVYLIGAKAEIASLVDA KLRKEYPDLQIAKVEDGYFKEDLETVAKRIKAAKPDMVFAALGCPRQEQLLAILKKQGVP AIMMGVGGSFDVFSGKVRRAPKFFQKIHLEWFYRLATNPARIGRMQALPKFIVNVYRHRK N >gi|308170256|gb|AEHR01000013.1| GENE 38 35326 - 36600 1240 424 aa, chain - ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 20 343 71 397 476 106 23.0 8e-23 MVFCSLSISYIGMRTISKIRAHSNKEELTEAFWGLWYFQALASSVMIILFIIFLLFIHIK YWNYFFIMLPFLISAQLDISWFFQGLAEFGKVVLRNTCVKLLSIALILLLVKNPQDLDKY MLIMSVSTLLGSCVFWLNIKQYVAKPVKHFYKFQQTIKAIIILLIPQIATQIYTALDKPL LGMFQSSTQVSFYDNSQKISKIILGIITSITIVMMPKMAAEIKEKQRVMLRKSLEATVML GLIFAVVVMINTKEFVPFFFGDKYLAMTDLMFWFTLTVVIIPLGGVFANQFALANGKDKE YAIPVIIGAIIECIAASILDIAYGACGALIAILFTETIVCVLRIWIVRKDYEFKYVFKDI PKYFLAAIITFACGMLMPSLTHSAFLNMAYKSILVMLIYGLILALLHLELNQDIVTVIKK IIKR >gi|308170256|gb|AEHR01000013.1| GENE 39 36768 - 37865 863 365 aa, chain - ## HITS:1 COG:MTH365 KEGG:ns NR:ns ## COG: MTH365 COG1887 # Protein_GI_number: 15678393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Methanothermobacter thermautotrophicus # 4 341 40 384 409 129 28.0 6e-30 MMFLLKFVGTDNNLYVILNEAGRSGSNGFIFYRYLKKYHPEVDVVLVEPWPSAHLAFKTW LKIGRAKHIFTTHQPFKIKSKQVLSCFWHGIPLKKMALMSNNTSYKSDCRNIKSWQKADY ISSSSSLYETLMTSCISVKASKYVRTGFPRIDALYNPEVTKADVLKQYFNVTDVTAKIGV YMPTFRYELEDDSIMDKISRGNFFAFDYFDLSKLEQVLQKKNKYLIVKLHPYEMKKIDEK CKNYDHIYFLKDIDLFKFNYDMYDLLGNTDFLITDFSSVYFDYLHLDKPIYFVTNFLKEY EKTRGLLMGPYADIVPGAKINTFVELLDILENDTDTFAAARHQWLNMTYEIDFQQNCKRC FDALK >gi|308170256|gb|AEHR01000013.1| GENE 40 38038 - 38427 516 129 aa, chain + ## HITS:1 COG:lin1076 KEGG:ns NR:ns ## COG: lin1076 COG0615 # Protein_GI_number: 16800145 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Listeria innocua # 1 127 1 126 127 186 74.0 1e-47 MKKVITYGTFDLLHYGHVRLLKRAKELGDYLIVALSTDEFNELKKHKEAYNSYNERKYIL EAIKYVDEVIPENDWNQKITDVQKYNIDTFVMGDDWKGKFDFLKEYCNVVYLPRTPGIST TKIKHDLHN >gi|308170256|gb|AEHR01000013.1| GENE 41 39028 - 39651 555 207 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_10090 NR:ns ## KEGG: LAC30SC_10090 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 195 1 195 286 226 61.0 7e-58 MTIGELLKKYRVSQGKKQAEFTKRGLIVSQSYYSKVEKNINRITADSLIELLNYNNIPLW KFFSQLNSTDELKYQQIKDFNNTMVEAYYENNIEEVKHLKPLLEASNLSIKDKEEEQLII DAWIEAMKPSSEAPNLKLRNKIKEKIFNIYDFNDTNVALFCNFMQFYELDSNILISKKII ERYINTKNTKMQVVFAGYNNKYIKFCT >gi|308170256|gb|AEHR01000013.1| GENE 42 39758 - 41011 1303 417 aa, chain + ## HITS:1 COG:SP0145 KEGG:ns NR:ns ## COG: SP0145 COG0477 # Protein_GI_number: 15900083 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 379 1 378 408 98 26.0 2e-20 MDVFLKNKYYRRFSIASFLSTAGDILFYLAFLTYASKLKNYSLALSLIAISESIPRLLDI FGGYLADKTRNKLKNIFWMAIIRFSLYGLVGFLFITHISQWNLVLIIIVINFISDIVGTY SAGLCAPIIVELVDKEKFAEAEGFTNGLDEVFSTTAQFVGSGLLLFLSYSNLAFINAFTF LAAGLLYLSVGLRHTKENTPLASTEVNDQNFFATMKSSYIQIKKASGLLSTVLVIALLNG ALSAMGSLLPIIMAGHRSTMLISNYSFTLAVIGVVISVGSILGSAFGPQLFKKQSVFIIV MIAIVLSIATTIAAFLTNIYAILPFYLLLAAIASTASLKMQQWLVTTIDQTILASSMGLL NTIIMATAPAMTMFLTTISGLTNVKYSLFVLLVIECISFIVSIKLNAKDKMNNVEIS >gi|308170256|gb|AEHR01000013.1| GENE 43 41111 - 41812 994 233 aa, chain - ## HITS:1 COG:SP1446 KEGG:ns NR:ns ## COG: SP1446 COG2188 # Protein_GI_number: 15901296 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 232 6 233 235 216 50.0 4e-56 MQEPVYIKIHNQLKKDIENKKYAVGARIPAERKLALEFNVSRMTLRQAIKTLEDEGILER RLGSGTYVASQKVKEKMMGIMSFTDITKLNHQTASTRLISYRVTQPSLTEREKLNLNSMD EVLRMERVRSADNIPICYEVATIPYTLVKNFSKAELSAGLYQTLIEKGGYQIGKVVENIG ATIATEMDARLLSVNKGEALVTRRQVTFLQNKMPFEYVRAFYVADRFEFTFEK >gi|308170256|gb|AEHR01000013.1| GENE 44 41971 - 42159 153 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTAPKTVALPLGYNPITMEESGFEPLNSERTVLQTGAFSHFATPPKRYLIMIIKNILNCK HF >gi|308170256|gb|AEHR01000013.1| GENE 45 42216 - 43124 1279 302 aa, chain - ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 2 299 3 300 302 240 42.0 2e-63 MRKVGIIGLGHVGATVAYTLFTHGVVDTMVLIDANEGKAVAEYNDLRDTLARNDYHVNVY MQDWSQLADADIIITSFGKISAVIENGDRFGEFRINSKNAKEIGEKIKATGFKGIIINIS NPCDAITTLLQETIGLPHNKIFGTGTFLDTARMQRIVADELGQDPRNVQGFVLGEHGSSQ FSAWSTVSVNGKSVLEIFDDQKLAQMSAQSNKNSFIVARGKGYTSYAIATCAVKLVLAIF SDAHLFAPVSVYLEEFGTYIGYPAIVGKNGIERVIKLELPDKEYAQLAKSADIIKEHIDQ IK >gi|308170256|gb|AEHR01000013.1| GENE 46 43366 - 44529 1211 387 aa, chain - ## HITS:1 COG:lin1454 KEGG:ns NR:ns ## COG: lin1454 COG3425 # Protein_GI_number: 16800522 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Listeria innocua # 1 385 1 388 388 327 45.0 3e-89 MKIGIDKIGFYTPNKYVDMVDLAMARNVDPNKYLKGIGQEKMSVADISQDAVSMAINATK QYLPKIDIDKVGLLIVGTESSVDESKSASLFVKSALKLKASVRTFEIKEACFGLTAAIFT AYDYISTHSDKTAIVIGSDIARYGLNTAGEVTQGAGSISLLIKKDPAMLSINPQTSAYSK DINDFWRPTGSATALVDGKYSTQVYLDFFEYTFKNYQKQNHVDISNFKALLYHLPFTKMG LKANNLAIANLAERDAKKLTNEFKNSIELSKQVGNIYTGSLYLGLLSLLVHAELKLNDLI GLFSYGSGAMAEFFTFNIEAGYRNEIIDPYLILNRRKRLTVAEYEKIFTESLQAPIDGQS LVSDEQAGMWYFAGTKNHIRQYCEKNR >gi|308170256|gb|AEHR01000013.1| GENE 47 44529 - 45737 1348 402 aa, chain - ## HITS:1 COG:SP1726 KEGG:ns NR:ns ## COG: SP1726 COG1257 # Protein_GI_number: 15901559 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Streptococcus pneumoniae TIGR4 # 34 398 46 423 424 251 42.0 2e-66 MKFYELSAMQRRQYYLNKGINFVDIDATELDRLDQLSENVVSKITLPLGLVQELIVNEQT YCVPMCTEEPSVVAAANHGAKFFNLAGGTKCICQRQGIYGQIICEINSQFNLVMLQNKLP NIIEAVNQKFDSLIKHGGGLRKIETFVKEDMLYLRTLVDPADAMGANKTNLILEDISQRL QKMTGVSELICAILSNYPSQFVQAKVEIPLQLVGTHLATKIAKLSRIGQVDPYRAVTNNK GIMNGVDAVLLASGNDYRAVEAACGVQASIDGHYTSLSKWQIEGNKLIGCLTLPLAIGVV GGSISARKDVQQSFSLLGKVNAQQLANIIASIGLANNFAALYAITSRGINAGHMKLQARN VVAQLEADHNQKKQVLNQMIANQKFTLTDAKQILELIRKQDN >gi|308170256|gb|AEHR01000013.1| GENE 48 45734 - 46900 1378 388 aa, chain - ## HITS:1 COG:SPy1637 KEGG:ns NR:ns ## COG: SPy1637 COG0183 # Protein_GI_number: 15675510 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 380 1 388 395 322 45.0 1e-87 MKEIYIIDAKRTPFGKFRGFFSDQNPIDMASQLLSKMLSKNKLPKKQIEAVYIGNVCSTG LGQNPARQVALHCGLSQETISTTINDVCGSSLKAMRLAQAQMQIGDFDMVAVGGVENMTQ APFFVESQFKDHSQDHLQWTLMHDCLNDAFSHQAMGITAEMVAQAHKISRDAMDQYAYES HQKAIKAIKNDWFAQEIIPFKKENETLVNDENVRFDTSLEKLAKLRPVFMENGTVTAGNS SPLSDGASFLILATGDKVKELKLKPIAKLGKFIEIGCDPNYMGYGPYYAIRKLLNNTNTT IDDYDVIEINEAFAAQIVAVARDLRIPNNKLNIAGGAISLGHPLGATGTRLVATAINNLK KVSGHNALVSLCIGGGQAIACNIECVTK >gi|308170256|gb|AEHR01000013.1| GENE 49 47138 - 47527 372 129 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01770 NR:ns ## KEGG: LCRIS_01770 # Name: not_defined # Def: cell wall-associated hydrolase # Organism: L.crispatus # Pathway: not_defined # 4 106 4 108 247 89 43.0 4e-17 MLSKKHFLKTFMISCLILISIFTFNSFNKDNSAQAATKQIIRINYVPNYGIAVWDNYDNG HVTGQYLANNSRWVVIKTAKDAEGNTWYDLGNNQWIMAKYTVDESSVSQAANDAETEAKK LDRMARITW >gi|308170256|gb|AEHR01000013.1| GENE 50 47445 - 47699 122 84 aa, chain + ## HITS:1 COG:no KEGG:LA2_10210 NR:ns ## KEGG: LA2_10210 # Name: not_defined # Def: aggregation promoting protein # Organism: L.amylovorus # Pathway: not_defined # 17 84 53 120 120 101 75.0 1e-20 MKAVYLKQLMMLKLKQKNWIAWRESRGSYTARNGQCIGKYQLLAAYLHGDFSPRNQELVA NNYVYGRYGSWVNAKQFWINHGWY >gi|308170256|gb|AEHR01000013.1| GENE 51 47772 - 48056 242 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309803831|ref|ZP_07697916.1| ## NR: gi|309803831|ref|ZP_07697916.1| hypothetical protein HMPREF9214_0363 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0123 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0747 [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_1194 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0580 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9214_0363 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0123 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0747 [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_1194 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0580 [Lactobacillus iners UPII 60-B] # 1 94 1 94 94 122 100.0 7e-27 MNGNGIVIILLCLAAIIVLLTEILNILIKQFPDNSVCKKIWCTSSYGEILFAIIAMIYVF VSYDTNIKFSIIFFVLSLLLLKGLHGLKQYYSKK >gi|308170256|gb|AEHR01000013.1| GENE 52 48336 - 49709 1626 457 aa, chain - ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 7 451 3 448 449 322 43.0 1e-87 MKPYNSRKLSLKEYLVVSSLLFGLFFGAGNLIFPLHLGQLAGGKWIVATIGFLITGVLLP LLSVLAISVTKSEGVFDVGKPLGVGFALVFMVLIHATIGPLFGTPRTATVSFTVGVEPFV GSNNHTLALFIFSAVFFLLAFGFSYHENHILDNVGKVLNPLFLSLLFIMFLVAFLRPLGN PMTAAATKDYVNASLINGFLQGYNTMDALAGLAFGVTVVTAVRQMGQRKESDVSKVVAKS GFVGMAAVAFIYLLLIVAGAMSLGHFKLSGDGGVAFTQIVNYYGGAFGQAVLAVLITVTC LTTAVGLVAAFAQDFHKHFPAVSYHTWLALTTFASFVVANFGLEQIIAWSTPMLMFLYPL SMVLILLSVCSPLFKRNSYVYFFVVLFTVVPALGDMVVAFPAVVSHSAFGLAVAKYREML PLAEFGLSWVVPALVGLVIGLAMYVYKDKKMSTQTVE >gi|308170256|gb|AEHR01000013.1| GENE 53 50099 - 51253 1621 384 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 383 1 378 378 263 37.0 6e-70 MDEKGKLQVLCDLIKINSANGNEIEVAEYLSKLLSQHGLTAKIDAFGNKRANLLLEVGQG KKILGLTGHMDTVSLGDLTKWNTNPLEPTIIGNKLYGRGASDMKSGLAAQAIALIELYNS GELPQGRIRWIVTAGEENGTPGANRFEEQGIADDLAALIVGESTDGDIIFAHSGSLSYRI SSVGLSVHSSMPEKGKNAFDALVEFYRREKNLFDDAPFDEYLGSVKHSITVMHGGDQVNT IPDHAELLGNVRPTTAFGNDNVIKKLKQLVDKVNIDLDAKLQFELIYSYLPIETDPQSNF IKDAIEISQQSYQQFYPQHRKVNKDVFNGATDASVFIKKHHNLPVFIYGPDTWQVAHKIN EYTTIPSFYATIDAYKKIIKHFFA >gi|308170256|gb|AEHR01000013.1| GENE 54 51364 - 52203 771 279 aa, chain - ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 20 279 25 285 286 257 53.0 2e-68 MKNQRNIIVTVVAVLLIIVGFFTLHRKGNSSEKNVTIGVVSQSKQDEAIWKIIRKDIKDK YGINVKIKNFTDYTQPNKALQNGDIDLNAFQHQAFLDAWNKANKGTIVSIGKTFIAPIRL YSNKYKSIKKLPKGATISLPNDATNESRALFVLKNAGLITFKKNCSKLATIKDIATNKKQ FKLKEIGAEQTARTLSDVDAAFVNNNYAIASGLKTNSAIYTEPVNKDSKQWINIICSTRK NKNNPLFKKIIKVYQTNKVKQLYKKYYGNTQIPAWDIKL >gi|308170256|gb|AEHR01000013.1| GENE 55 52598 - 54673 2321 691 aa, chain - ## HITS:1 COG:no KEGG:Apre_0464 NR:ns ## KEGG: Apre_0464 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 12 576 63 637 763 397 40.0 1e-109 MSDSTSLELVNVVTLAQLKNKKVVAIKIHGNHWHVFTADGNEYLTYQNPSSMFPHIKVTK YTGHHGSRGTASITKALAKDRVVKILQHGDHFHIYTASGKEFISYSDPRGMYPHAVFGQY VGTHGQHATQKVTSKQQLHLVSVLGKKVADKNRIVKILQHGDHYHIYDAEGNESITYSDP RALYPNAVFGQYVGTHADHQQAQNIEQLQFVNVLGQKTVDKNRIVKILQHGDHYHVYDAE GNESITYSDPRALYPDAVFGQYVGTHADHHSENDEHSTHIENNEPSTHIEDKHDDNKDAI ANLKIVPVLGQKGKIDRYDIIKILQHEDHYHIYDSQGNEGITYTNPRALYPNAKFGQYVG THSQHNTNVEIDWPEGIDKIVDHGDHWHLYKNGQEITVVHENPKSHYPNAEYIDERPKDY SNITVENNEIFTYDEVKPEVKDGLREFLKKKDMRGIVDMEGFGDLTNETRPVYGSETDEN GQPIKKDIFYFCHNGDHYHALTIKQIIQAAKAGEYGSFTARDIVAAMKWSIENKEKLVTF TVSKNIDAVKNYLKQYYHIDDENDISSVGNQIGIYGIKADGNPVYFNVDDDFTVENGQIK STKPLPAREEKTDQKSETNPQKELPVENVNQTALTKVTLDSVKAFLIAKYPNSEVSAISG ILYVSNGEDEAPLQFKLTDFAIKDNKIVEKK >gi|308170256|gb|AEHR01000013.1| GENE 56 54975 - 55769 775 264 aa, chain - ## HITS:1 COG:CAC2878 KEGG:ns NR:ns ## COG: CAC2878 COG1108 # Protein_GI_number: 15896132 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Clostridium acetobutylicum # 1 255 1 255 268 147 38.0 2e-35 MLEIFDYEFMRRAFIVGMFLAIILPTMGLPILLKRLSMIGDTLAHSSLAGVAIGLCFGFD PLLASIAACIVAGLGIELIRNKLKAYQEISTVIILAASIGLAGVFMSFINNANSISAYLF GSIVTISDSEFYLVIAVSLFVIVCSYLLYNTLYLCVFDPKAAPILGINVKFINFMVTFLS AVAISISAKTIGSLIVSSLLVIPVVSAMQIARTYKKTLLLSILLSVAFVYTGLFISYFFN LKPGSVIVLISVIWLILTMIIKKN >gi|308170256|gb|AEHR01000013.1| GENE 57 55769 - 56440 272 223 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 194 1 199 305 109 33 5e-23 MNKVLDIENLTFAYEEKKILENFSCSIEQGNFVAIVGENGAGKSTLLNLILHNLKPLSGK IKIFGDDIDQKNHYQDIAYVSQSSVQNYRNFPTTVIEVIYNHLKFLKVKEPPEKYLDLVG LTEHQNKVLSELSGGQLQRVALAAAMIKNASLILLDEPTTGIDKKFSREFFGFLQEIASS GKTIVIVTHALDDAIDFIDYAIEIRNASGHILSRSDLQQLVVK >gi|308170256|gb|AEHR01000013.1| GENE 58 56433 - 57344 955 303 aa, chain - ## HITS:1 COG:lin0191 KEGG:ns NR:ns ## COG: lin0191 COG0803 # Protein_GI_number: 16799268 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 1 300 1 310 312 190 38.0 3e-48 MKKHLFLFFTFLAIFCGCLTGCSKQQSSNNKKVIYTTFFPVTDLTKRIVGNKMEVKTIIK GNEEPHSFELKTNDMKDIAKADLIIYNGAGMENFIPALKDTVKKKNKFLDLSQGLKLLEA GKGIVKAHDRVNPHTWLSVKNAYEQLDTIYRKVASMDPNNEAYYKKNLKKAQSEFKSLDN QFEKTVAKFKGKDKYFVTSHAAFNYLARDYGFKQVAVTGISPDEEPSAKQLKKIADFVKK HHIKTIFFEGKATPKVAKTLAKNTHTKTDTIYTMENLTDDEAAMGYLKLMELNMKALMRS FNE >gi|308170256|gb|AEHR01000013.1| GENE 59 57507 - 57998 567 163 aa, chain - ## HITS:1 COG:no KEGG:LPST_C0132 NR:ns ## KEGG: LPST_C0132 # Name: not_defined # Def: integral membrane protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 3 155 12 164 170 95 44.0 9e-19 MVVLAMLIALYIIFSRLLSLNIGGSHKISFTFICIALMGCLYSPYVTAISCAGADFIGCM LFPKLTYFPGFTLTAFLVGLVFGIVFSNKVNFVRILIATGLTCLIQFFVNSFWLKIICHV PYSVMLISRIPQECIMAVVMVILLSALFKLDIIQRKIKMWHEQ >gi|308170256|gb|AEHR01000013.1| GENE 60 58138 - 58596 647 152 aa, chain - ## HITS:1 COG:SPy0504 KEGG:ns NR:ns ## COG: SPy0504 COG0691 # Protein_GI_number: 15674609 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 1 150 1 150 155 167 62.0 1e-41 MKKKENDALATNKKASYDYFIKETFEAGIALTGTEIKSVRARRINLKDGYVQTYRGSAFL ENVHISEYKQGNIYNHDPLRSRRLLLHKKEINHLQIIQAQQGMTIIPLKVYLKHGYAKVL IGVGQGKKQYDKRETIKRRDQDRELKSKYKIR >gi|308170256|gb|AEHR01000013.1| GENE 61 58599 - 60341 1233 580 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 10 544 173 703 730 479 45 1e-147 MKDGLTPQLGDIVQVSLKTYPSEESPEDMTAVVIKVIGNKNDPGVDIMAIVADHDVKTEW SDEALEQANQIPDHVTAADKAGREDITQQAAVTIDGDDSKDFDDAVVLWKLDNGNYHLGV HIADVAHYVTEGSPLDIEAFTRGNSTYLVDRVIPMLPFRLSNGICSLNEGVERLVLSCDM EITPTGERVNYSIHPSVMKSHGRLTYSKVNRALAGDHLDELEEKYRTLRPMLVEMAKLHD ILYQKRHKRGAIDFEEPEAKIIVDKMGKPIDIVLHERGTAEKMVESFMLLANETVAEEYF RRHVPFLYRVHETPDEEKMKTFFEFVSAFGLNVKADPHDVKPSDLQQIVTKTAGTTEEAV VQMMMLRSLRQAHYSAEPLGHFGLAAQYYTHFTSPIRRYSDLIVHRMIHEYGVGKPATEL QKHFQGKLDEIAEQTSVQERRSIDTERSVNDLKMTEYMANQVGEHFDAIISSVTSFGMFI QLPNTVEGLIHISNLTDDFYRFDEKSLTLTGRGKHHQFKVGMPIKVKLINADVAQHQIDF EIYDPNTPKIKNNDHNQTKTPYRQRTSQNNRPYRKRNRQR >gi|308170256|gb|AEHR01000013.1| GENE 62 60338 - 60874 155 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 10 177 6 162 730 64 26 1e-147 MPQDERVLASIYEVFRHNSQKSYTIDKLDRELHNKLHYKFTELVRGVTFLEHEKKIITDG LGKYQLNRLDTIVEGTFRANDKGFGFIRYDEVADDIFVDKTNTSFAIDGDTVKAKIIADA NPWNGKGPEGQVVEIIERGFENLVGEFIPFSDQQVATTNYLGYVISENKKLKNIKYIY >gi|308170256|gb|AEHR01000013.1| GENE 63 60945 - 61163 146 72 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_02310 NR:ns ## KEGG: LAC30SC_02310 # Name: secG # Def: preprotein translocase subunit SecG # Organism: L.acidophilus_30SC # Pathway: Protein export [PATH:lai03060]; Bacterial secretion system [PATH:lai03070] # 1 72 6 77 77 84 83.0 1e-15 MTLIIIVSFLIIIATLMQPQKQQDALNALSGGAVFSGQTKKRGFEALMEKITGVLLVIFF VLAIILVKLSSK >gi|308170256|gb|AEHR01000013.1| GENE 64 61297 - 62595 2135 432 aa, chain - ## HITS:1 COG:BS_eno KEGG:ns NR:ns ## COG: BS_eno COG0148 # Protein_GI_number: 16080443 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Bacillus subtilis # 1 430 1 430 430 583 69.0 1e-166 MSVITDIHAREVLDSRGNPTIEAEVYTEVGGFGRAIVPSGASTGEHEAVELRDGDKSRFN GTGVLTAVENVNGEIAKAIIGLDVTDQRLIDQTMIDLDGTPNKGRLGANAILAVSLASAR AAADELGLPLYEYLGGPNAHVLPTPMMNVINGGKHADNNVDIQEFMIMPVGAKSLHEAVR MGAETFHTLKKILKERGEFTGVGDEGGFAPNLKNNEEPFEILVEAIQRAGYKPGEDIAIA FDAAASEFYNKETKKYVTVADGREYTAEEWTSLIEDLVDKYPVISLEDPLDENDWEGWKT FTDRLSGKVQIVGDDLFVTNTNYLKKGIQKGVANSILIKVNQIGTLTETFEAIEMAKEAG YTAIVSHRSGETEDTTIADLVVATNAGQIKTGSMSRTDRIAKYNQLMRIEEALGSTAEYK GIHSFYNLHKQF >gi|308170256|gb|AEHR01000013.1| GENE 65 62646 - 63401 870 251 aa, chain - ## HITS:1 COG:SP1574 KEGG:ns NR:ns ## COG: SP1574 COG0149 # Protein_GI_number: 15901416 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 2 249 3 250 252 313 62.0 1e-85 MRTPIIAGNWKLHMNPEQTTEFVNAVKNHLPESSKVEAVIAAPALDVDALRKAAAGSNLH TSAENCYFEAEGAFTGENSPLVLKEMGINYCIIGHSERRGYFHETDEDINKKAKALLEHG VTPIICCGESLETREANKQEEWVVSQIKAALEGLTAEQVSSLVIAYEPIWAIGTGKTASS DQAEEMCKTIRETVKDLYDEATSDNIRIQYGGSVKPANVKELMAKPNIDGGLVGGASLDP ESFLALVNYQD >gi|308170256|gb|AEHR01000013.1| GENE 66 63419 - 64633 1681 404 aa, chain - ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 404 1 396 396 502 67.0 1e-142 MAKLIVSDLKDLEGKKVLVRVDFNVPIKNGVISDDNRIVAALPTIKYIIEHGGKAILLSH LGRVKSDADKKELTLKPVAERLSELLEKPVTFVPENEGKEVEDAVAAMKNGEVIVLENTR FQDIDNDFGKRESKNDPTLGEYWASLGDVYVNDAFGTAHRSHASNTGIATAMKAAGKLAA AGYLMEKEIKFLGNAVSNPVHPFVTILGGAKVSDKIGVITNLIPKSDHILIGGGMAYTFL AAQGHKIGKSLFEEDKVELAKELLAKAGDKIVLPVDHVAATEFSNDATHEVVDIDIPDNE MGLDIGPKTVEKFKEILKDAKTVVWNGPMGCFEMPNYAEGTLEVGRALANLTDAITIIGG GDSTAAAKQLGIAPKITHISTGGGASLNYLEGKELPGIACISDK >gi|308170256|gb|AEHR01000013.1| GENE 67 64742 - 65758 1250 338 aa, chain - ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 338 3 333 333 414 64.0 1e-115 MTVKIGINGFGRIGRLAFRRIMELGEKSKDIEVVAINDLTTPALLAHLLKYDSTHGTFNH EVSATEDSIVVDGKKYRVYAEPQAQNIPWVKNDGVDFVLECTGFYTSKAKSEAHLKAGAK RVLISAPAGSDLKTVVYGVNEGTLTADDKIVSAGSCTTNSLAPMVNALNKEFGIEVGTMT TIHAFTSTQMILDGPVRGGNFRAARTASANIIPHSTGAAKAIGLVIPDLNGKLNGHAQRV PVVDGSVTELVSILSKEVTADEINEAMKKYETPSFAYNDDEIVSSDVLGMTAGSIFDPTQ TMVTTAGDKQLVKTVAWYDNEYSFTCQMVRTLLKFATL >gi|308170256|gb|AEHR01000013.1| GENE 68 65815 - 66846 856 343 aa, chain - ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 3 341 2 341 348 251 40.0 2e-66 MDSDLTLLQSLVPDVFKIIRQRFLVLEQISLLAPVGRRVVAKKLGLSERNIRTETDYLKQ LHLIEINSSGMVLTEKGEITLKELAPLIDRIFNASKTELQLASKLGIDRVIIVPGNADLQ DRVWALMGEQLSAALDLLLPLGKDIITVSGGKTVANVTKHLSKRLSRYRDILFVPGRGAL GDDVELQSNTIAQAVASKVGGRFSGLYLPENLPSEAINALMQDPMISNTFTSIYNSDAVI HGIGLADNMARKRGFDAFTRSKLMDKGAVAECFGYFFDHNGHLVDRVPRVGFQLEVLDKI PHVFALAAGELKAPAIIAYMHHAPKQTWLITDEGASNKVLREN >gi|308170256|gb|AEHR01000013.1| GENE 69 67359 - 67943 701 194 aa, chain + ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 2 193 3 194 198 267 70.0 1e-71 MLVPTVIEQTARGERAYDIYSRLLKDRVIMLSGEINDTMANSIIAQLLFLDAQDNTKDIS LYINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTAGTKGKRFALPNSTVL IHQPLGGAQGQQTDIQIAANEILKSREKINSILHETTGQPLEKIQADTERDKYLTAQEAK DYGLIDEILVNKNN >gi|308170256|gb|AEHR01000013.1| GENE 70 68052 - 69308 1283 418 aa, chain - ## HITS:1 COG:TM0930 KEGG:ns NR:ns ## COG: TM0930 COG0714 # Protein_GI_number: 15643692 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Thermotoga maritima # 35 327 22 258 351 75 26.0 2e-13 MPNKKFYPYIAQGANAKQMFNIMQACIRAGVPFGLVGNPGVGKTATIEAMAKTLGRDLIN LSLSTMLPEDIAGLPFPTKINIGSDKNEQMVDAACYAMPVWQQRLLHNSNAILFLDEFST AIPTTQHAFLQLVQNRRLPGSDLPFSKNVAIIIAMNPADQAGGSSLDLPIANRFAWFTFN PDFNDWATGFKQRWQSEELMSVPSFCTEEKILMARNKKIRSTIIDYLDSEKGAHQVTIVP SGMENPISSVVRRDDPAEMEVFRLAFPSARSWDNLAEIMTYIDEKDFGTIQVVINGTIGS NQGIAFYKYYVDNLKRLNIDAILKDPKSVDWKHISIDESAGIFRALIEEAANGRLDQVLE VFISIKIAGAENLLSGNRLQDIYKAEYLNKLPLATRKKVKQRYLEYFGDFLTKIANNN >gi|308170256|gb|AEHR01000013.1| GENE 71 69324 - 70817 1282 497 aa, chain - ## HITS:1 COG:no KEGG:Mahau_2494 NR:ns ## KEGG: Mahau_2494 # Name: not_defined # Def: von Willebrand factor type A # Organism: M.australiensis # Pathway: not_defined # 83 445 7 374 407 98 27.0 6e-19 MNDEFHNVLSADIQLNKEDYLKYDLEKINDRALAVRDILKSGGISKNNQKMQQNLILAYC ILAKLGITSYSIRKLSAEEMSVFQMATYKAVTAASALTGYISLLHPMVSVNYATLATDAN LRLGIGWWFFDPILDNVERGTLLLHEVMHTVLGHYELKNLDMQLVNTAGDAIINQEIEFG DHEVMHLPQNEDKSDFIVFPRTIITQKYPKGMPNNQSFETYYHALEERKKTPVPDQNSDI CNSMSSQEESEFDKQNVEKAGEIEKELARNEALHKALDQENKTVGRNGSSFNSFILKALR PAKISWQKCLKNIIAKHCNTVIEGNMDYSYRRPSRRNFSNIFIRPGTISYLPKILIGCDS SGSMDEVDYRRLMSEIKEICKTVQHEKISFVTIDTKITTKQVVHKVQDIVLGAGGGTCME KFYEYIHQLKASEKPDLSILCTDGYLGGIKEWTLLLNSIDKNIINIILITDRQGYDSFIN LYGCNTPVKNTTVISIY >gi|308170256|gb|AEHR01000013.1| GENE 72 70810 - 71754 1010 314 aa, chain - ## HITS:1 COG:BS_yvcL KEGG:ns NR:ns ## COG: BS_yvcL COG1481 # Protein_GI_number: 16080528 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 309 2 307 316 315 55.0 6e-86 MGSYASEVKKELTGLSVHPEHAKAELSAFLRMNGVLNLNQHHLSLNIVTENPAIARRIFS LIKIAYGIEPALIVSKKMKLKKNYQYLVRLQNNVKFVLHDLDIIDESFGVLTGIPSKIQQ SEQLAMSYLRGAFLAAGSINNPETSRYHLEIYSLYQLHNDDLMNLMNKYFYLNAKQTKRR SGYIVYLKEAEKIGDFLHIIGAVNAMLAFEDLRIMRDMRNSVNRLVNCDTANMKKTASAA AKQVEEIKLIDKKIGLDKLPEKLAILAKFRLQNPELTLKEVADKVPDGPISKSGINHRFQ KIKKIAQNLGEKHE >gi|308170256|gb|AEHR01000013.1| GENE 73 71754 - 72788 998 344 aa, chain - ## HITS:1 COG:SP1565 KEGG:ns NR:ns ## COG: SP1565 COG0391 # Protein_GI_number: 15901408 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 15 332 2 320 325 340 52.0 2e-93 MSFGENKIVKVIKARRPKIVVIGGGTGLPVILSALKQQNAEITAIVTVADDGGSSGVIRD YINVVPPGDIRNVLVALSDISQEEKEIFQYRFSSDDSFFAGHAIGNLIIAALSEMQGNIF DAVQSLSRMMHVDGRIFPASNEPLTLNAEFMDGTTEKGETEITSQHKKIKRVWVTGAKNN ARPEAVLPVLAAIMQADAVVLGPGSLFTSILPNLMIDDLGEAIRQTKAEVIYICNIMTQR GETDNMTSAEHVAIINRHLGGNYIDTALVNSAAIDMTKFNPADYDEYLRPVENDFKGLRK QNCRVITADFINQHSGLVFHDGKKIATEILNLALEAYARRKQEK >gi|308170256|gb|AEHR01000013.1| GENE 74 72801 - 73676 894 291 aa, chain - ## HITS:1 COG:SP1566 KEGG:ns NR:ns ## COG: SP1566 COG1660 # Protein_GI_number: 15901409 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 287 1 288 296 310 53.0 2e-84 MNVRKKQLLIVTGMSGAGKTVTVKSLEDLGYFVVDNLPPELLSSFWELINSSNDFDKVAV VIDLRVKSFYKDLVVEINSLEDNSKAHATILFLDASDDVLVSRYKETRRLPPLAQSGRLL DGIKKEREALESIKNLSNYIIDTSKLTAKDLKEQLVKKFSDDQTHVFSIEVMSFGFKYGI PIDADIVIDVRFLPNPFYIPQLKPFTGLDRKVFDYVMEKEQTQIFYHKFLDMLFTAIPGY IEEGKEKLTIAVGCTGGQHRSVSIAIQLAKDLSKKYPVDISHREISRYIRK >gi|308170256|gb|AEHR01000013.1| GENE 75 73728 - 76544 2824 938 aa, chain - ## HITS:1 COG:SP0186 KEGG:ns NR:ns ## COG: SP0186 COG0178 # Protein_GI_number: 15900123 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pneumoniae TIGR4 # 4 936 3 942 943 1241 65.0 0 MKNDVIVMHGVREHNLKNIDLTIPKNKLVVVTGLSGSGKSSLAFDTLYTEGRRRYVESLS SYARQFLGQMDKADVDSIEGLTPAISIDQKTRSHNPRSTVGTVTEINDYLRLLWARVGKP ICPHDGTLIESQSVDQIIKQILALAPKTRIQILAPIIRQKKGEHKEVFKRIQRLGYVRII VDGVLHDINDELVLDKNKQHSISVVVDRLIIKEQIKSRLTDSVETALRLTDGYLDVDIVG DKLMKFSEYYACPSCGFTVGELEPRLFSFNAPFGACSECDGLGMKLAVDPDLVIPDPEKS LNQGAIAPWCNSKYYTDMLLQVAATFKIPTDRPFKKLTERQKRIILYGDDKVIKFHLTGD FGVNDVEQAFEGVLNNVDRRYHHPISKFMQDVMSKYMTELKCTKCQGRRLNEIALSVKIN GYDLATVSDLAITDELAFFESIALSEHDMMIAKPILKEVKARLTFLIDVGLGYLTLSRSA GTLSGGESQRIRLATQIGSNLSGVMYILDEPSIGLHQRDNARLIKTMKKMRDLGNSLIVV EHDSETMQQADYLIDIGPGAGIYGGKVVAAGTPQEVMANPDSLTGQYLSGKKKIAIPDHR RILNHGVIKLIDVSENNLKHIDVQIPLGGLVLVTGVSGSGKSTLVNLVLKRAILQKLGLM TKKPGKYKKMLGWDQIEKVIDVDQSPIGRTPRSNPATYTGVFDDIRALFAQTNAAKMRGY TKARFSFNIKGGRCEACHGDGIIKIEMNFLPDVYVPCEICHGTRYNSETLEVKYHEKNIA DVLKMSISEANEFFANIPKIKRKLQTIMDVGLGYIQLGQPATTLSGGEAQRMKLASELQK TSTGKNLYILDEPTTGLHVDDIKHLVLVLQRLVDEGNSVLIIEHNLDVIKCADWIIDLGP EGGAAGGEIVAQGTPEDVAKVEKSYTGQYLKPILNQNL >gi|308170256|gb|AEHR01000013.1| GENE 76 76572 - 78569 2080 665 aa, chain - ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 664 1 659 662 880 66.0 0 MIRKQKDKKFELVSKFQPAGDQKQAIDQLCDNFKQGVKEQILHGATGTGKTFTMANLIAK LNKPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAI NDEIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRD LVNIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEIL GKCEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIE MMQEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDR RRKQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDKVVEQIIRPT GLLDPIVEVRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYL HSEIKTLERMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLV QMMGRAARNENGKVIMYADHITDSMQAAIDVTERRRNIQMLFNQKHHIIPKTIVKPIRDI ISHTKDVDQKDKQINDFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAI IDLKK >gi|308170256|gb|AEHR01000013.1| GENE 77 78627 - 80354 1994 575 aa, chain - ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 560 1 558 572 503 46.0 1e-142 MGAKDRLAQWLGNERLNSDMRSELMEFKKNSAWVEDAFGQDINFGTAGMRGLLEPGTNRI NFYTVGRVTEGLAKLIEENGSTAIKRGVVIAYDSRYYSREFATHAAQILGNHGITVYLFD NLRPTPELSFAVRYLKTFAGINITASHNAKQYNGYKVYGEDGAQMSPDNADRLFAFAQKV TDIFSVTCASVSTLRQKNILHMIGEDVDQAYLKELATVNLNSCLINKNADQIKIIYTPIH GAGKVLYDRAFRQAGFKNIIPVVSQSIIDPEFPTTIKPNPEFKQCFDEGIKLANDLGADL IIATDPDADRMGACVRTSDGSFQVLTGNQIATLFINYLLVNLKAAGKLSSDYELITSIVS SALPFKIAQDYGIKTKHVLTGFKFIGEEIDRMSTQNDGHFLMGFEESYGYLFKPFTRDKD AMQGALMLAEVACYYASHNKTIFDGLQEIWNKYGFAYEVTSALEMPGLGGQEKMKLLMDK LRKDPIKEIMGQHVTKTQDFLLQTESINGQMSKLEGFTQSNVLKYFLEDNTWLALRPSGT EPVVKVYVGVNKDNFSDAKQAAEDYTVAIEHILFK >gi|308170256|gb|AEHR01000013.1| GENE 78 80371 - 81297 532 308 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 5 306 2 306 306 209 39 4e-53 MIKKYDVIIIGAGPGGLTAALYASRANLSVAIVDKGLYGGQMNNTGAIDNYPGFADITGP QLSEKMYQSAMKFGAEYFYADVQQIIVEQQMKKVITEKDEFHAPAVLIATGAVHKHLNIP GEDTYQGRGVSYCAVCDAAFFRNEEIAVIGGGDSAIEEGLYLAQTAKKVTIIHRRNELRA QPVLQKMAFANDKIDFIWNANTEEILGDGSRVTAVKYYDKNAEEHKILNVSGVFIYVGVQ ANSMAFSNLGICDEHGWIITDDHMQTKVEGIFALGDVRQKDLRQIATAVGEGSIAGQAAY HYLQTLKN >gi|308170256|gb|AEHR01000013.1| GENE 79 81317 - 82336 1230 339 aa, chain - ## HITS:1 COG:SPy0226 KEGG:ns NR:ns ## COG: SPy0226 COG0240 # Protein_GI_number: 15674414 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 3 336 5 334 338 327 52.0 2e-89 MAKISVLGNGSWGSVLGSMLADNGNDVILFGNIAAVNQEINEKHTNEHYMKNWSLNESVK ATDDLELALKDAEIVLFVLPTKAVRIVAKNVRKVLDKLGTKPLLVTATKGIEPGSKKLIS EILTEEIYPNDLDKIVAISGPSHAENVAQKDLTAIACASTDIKNAELVQKLFSNNYVRFY TNPDLIGVEVAGAVKNVIAIAAGILVGKKFGDDAKAALMTRGLAEITRLGVKCFGADRLT FSGLAGIGDLIVTCTSSNSRNWRCGKQLGEGKPLQEILDNMGQVVEGATTVKAVHELCEA NDVDMPISEAIYRVLYENSDVDLEIKKMMGRSPKPEIRL >gi|308170256|gb|AEHR01000013.1| GENE 80 82373 - 83206 954 277 aa, chain - ## HITS:1 COG:lin2625 KEGG:ns NR:ns ## COG: lin2625 COG0682 # Protein_GI_number: 16801687 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Listeria innocua # 5 267 8 267 277 249 48.0 4e-66 MNLIINPVAFRLGSMSIKWYGILMASGIVIALLMAIVEGKKRQIMPEDFSDFLLWGVPIG FVGARLYYVIFKWDYFAQNPGQIFAIWNGGIAIYGGLLTGLVVLILFCNSRFLPPLLMLD IIIPGVMAAQIIARWGNFINQEAHGACVSLSFLQSLHLPDFIIKQMYISGHYYQPTYLYE SFFNLIGLIIILALRHKKGLYKRGEVFFSYLIWYSVVRFFVEGMRTDSLYLMNTIRISQL VSVILFIVAIVLLIYRRKYKHVKWYLDGSGLKYPYER >gi|308170256|gb|AEHR01000013.1| GENE 81 83222 - 84160 1054 312 aa, chain - ## HITS:1 COG:lin2626 KEGG:ns NR:ns ## COG: lin2626 COG1493 # Protein_GI_number: 16801688 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Listeria innocua # 28 310 26 308 312 340 55.0 2e-93 MSDMVKISELLHDNPTLTVKQGEDYLEQRVVSVSDISRPGLELTGYFDFYPKERIQLLGK TEISYSTHLDHDLRTNVFRRMATDITPCFVISRGLPIPSELLEAAEQAKVPVLTSNMPTT QLTSVLMQYLDEHLAPRKSIHGVLVEIYGMGVLIMGNSGVGKSETALDLIKRGHRLIADD RVDVYQKDDKTVVGEAPAILKHLMEIRGIGIIDIMSLFGAGAVKEKSEIQLVINLQNWDP KENYDRLGIAEQYINIFDVAVPQLTVPVKVGRNLAIIIEVAAMNFRAKKMGYDASEKFER NLSALIADNSHK >gi|308170256|gb|AEHR01000013.1| GENE 82 84164 - 84460 210 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501055|ref|ZP_05743957.1| ## NR: gi|259501055|ref|ZP_05743957.1| hypothetical protein HMPREF0520_0565 [Lactobacillus iners DSM 13335] hypothetical protein LineA_00635 [Lactobacillus iners AB-1] hypothetical protein HMPREF9213_0157 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_0828 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0782 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0481 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0311 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0632 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9216_0774 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0522_1229 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0520_0565 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_0157 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_0828 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0782 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0774 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9217_0632 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_0311 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0481 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF0522_1229 [Lactobacillus iners UPII 143-D] # 1 98 1 98 98 80 100.0 3e-14 MKFKYFVIAILAFIILNLILLLNIIYKLLTFLFPIFFIIDILIIVFGALSIYIAIHKAKK KYSSYIKKFYYNDNCKQASTSHRKEARNVTIDDVDKED >gi|308170256|gb|AEHR01000013.1| GENE 83 84477 - 85475 1129 332 aa, chain - ## HITS:1 COG:SA0709 KEGG:ns NR:ns ## COG: SA0709 COG1186 # Protein_GI_number: 15926431 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Staphylococcus aureus N315 # 1 329 1 330 330 354 53.0 1e-97 MADDTFWNDQTNAQKIIEATNYMREKVDKYQTLSSALADAKTAVELYNMEPENDMLMEIT AEVEKLKNEFNDYELHLLLSGKYDDHNALLEIHSGAGGTEAMDWANMLFRMYQRWCDSHN LTFEVDDFQVGDEAGLKSVSVRVQGNNAFGLLKSENGVHRLVRISPFDSAKRRHTSFASV EVIPEIDKSINIEINPDDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTSSQAQRSQ FQNRETAMDMLRAKLFKLEEDKKRKQTEALKGNQKEINFGSQIRSYVFHPYNMVKDHRTD YETSDTIGVMNGNLDPFIYAYLQWMLSQENPE >gi|308170256|gb|AEHR01000013.1| GENE 84 85635 - 86825 1392 396 aa, chain - ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 390 393 781 839 463 62.0 1e-130 VPTNRPKARKDLPDILYPTLDSKFEAVVEDIQTRHAKGQPVLVGTVAIESSERLSKMLDQ AGIAHAVLNAKNHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTE RHESRRIDNQLRGRSGRQGDPGTTRFYLSLEDDLMKRFGSERVKAFLDRIAGSDDEKVIE SRMITRQVESAQKRVEGNNYDTRKQTLQYDDVMRTQREIIYGERMQVITEEHSLKEVLIP MMQRTIAHQIDLYTQGSKNQWRTDQIRDFIASSLASEEDAKKINLKNITVDELKEQLYEM VDNNYAEKERQLVDPEQMLEFEKVVILRVVDDRWTDHIDAMDQLRQSISLRGYGQLNPLV EYQEAGYRMFEEMISNIEYDATRLFMKARIVPNMSR Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:32:19 2011 Seq name: gi|308170254|gb|AEHR01000014.1| Lactobacillus iners SPIN 2503V10-D contig00147, whole genome shotgun sequence Length of sequence - 863 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 38 - 838 375 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|308170254|gb|AEHR01000014.1| GENE 1 38 - 838 375 266 aa, chain + ## HITS:1 COG:SPy0198 KEGG:ns NR:ns ## COG: SPy0198 COG2801 # Protein_GI_number: 15674400 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 1 262 6 266 268 247 50.0 1e-65 MRMARSTYYLEINKADVVANRNQELLAEITEIFEQHKRRYGVRRVHRELINRGYRMNHKR IQRLMREAGLFGKRPKEKYHSYKGEVGKVADNIIGRDFSTTAPLQKWTTDVSQFNFSWGK CYISPVLDMNTNEIISYDLSTSPNLEQVSRMLDRAFEKFPSVEGLIFHSDQGWQYRHAYF RNTLKERGIIQSMSRKGNCYDNCIMETFFGRLKNEMYYGYEKDYSSFEEFSKAVEEYIDY YNNKRIQAKTKWMPPVQYRIASMCPA Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:32:22 2011 Seq name: gi|308170247|gb|AEHR01000015.1| Lactobacillus iners SPIN 2503V10-D contig00116, whole genome shotgun sequence Length of sequence - 7999 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 3, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 401 - 460 3.4 1 1 Tu 1 . + CDS 513 - 710 280 ## gi|309807039|ref|ZP_07701020.1| hypothetical protein HMPREF9212_0194 + Term 715 - 760 8.4 2 2 Op 1 . + CDS 777 - 920 94 ## gi|259501592|ref|ZP_05744494.1| biotin-acetyl-CoA-carboxylase ligase + Term 1025 - 1056 0.2 + Prom 987 - 1046 9.2 3 2 Op 2 . + CDS 1142 - 1453 361 ## gi|315653199|ref|ZP_07906123.1| conserved hypothetical protein + Term 1598 - 1667 26.3 + TRNA 1470 - 1541 64.0 # Glu TTC 0 0 + TRNA 1560 - 1650 53.9 # Ser TGA 0 0 + TRNA 1661 - 1734 77.0 # Met CAT 0 0 + TRNA 1737 - 1809 62.0 # Asp GTC 0 0 + TRNA 1816 - 1888 78.2 # Phe GAA 0 0 + TRNA 1896 - 1977 64.5 # Tyr GTA 0 0 + TRNA 1982 - 2052 49.9 # Trp CCA 0 0 + TRNA 2067 - 2142 56.4 # His GTG 0 0 + TRNA 2147 - 2218 65.9 # Gln TTG 0 0 + TRNA 2242 - 2312 71.2 # Cys GCA 0 0 + TRNA 2346 - 2429 61.6 # Leu CAA 0 0 + Prom 2348 - 2407 80.3 4 3 Op 1 25/0.000 + CDS 2542 - 3696 1340 ## COG0438 Glycosyltransferase 5 3 Op 2 4/0.000 + CDS 3698 - 4741 1079 ## COG0438 Glycosyltransferase 6 3 Op 3 . + CDS 4741 - 5751 413 ## COG0392 Predicted integral membrane protein 7 3 Op 4 . + CDS 5810 - 7879 1635 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 7885 - 7932 7.5 Predicted protein(s) >gi|308170247|gb|AEHR01000015.1| GENE 1 513 - 710 280 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309807039|ref|ZP_07701020.1| ## NR: gi|309807039|ref|ZP_07701020.1| hypothetical protein HMPREF9212_0194 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_1153 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0872 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_0345 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9216_0557 [Lactobacillus iners LEAF 2053A-b] MarR family transcriptional regulator [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF9212_0194 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_1153 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0557 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9218_0345 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0872 [Lactobacillus iners LEAF 3008A-a] MarR family transcriptional regulator [Lactobacillus iners ATCC 55195] # 1 65 1 65 65 73 100.0 4e-12 MEEQKQKPFSAKRWHEDASPDQLFGRIKSKKRLERNKREIEKVLRIQKKLFEERERLAKQ QDKQN >gi|308170247|gb|AEHR01000015.1| GENE 2 777 - 920 94 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259501592|ref|ZP_05744494.1| ## NR: gi|259501592|ref|ZP_05744494.1| biotin-acetyl-CoA-carboxylase ligase [Lactobacillus iners DSM 13335] biotin-acetyl-CoA-carboxylase ligase [Lactobacillus iners DSM 13335] # 1 46 14 59 60 88 97.0 2e-16 MYTLYRIKIWFIQTFCCVHEWEVVVKDVPFHGTLYRCKKCGKGTTKT >gi|308170247|gb|AEHR01000015.1| GENE 3 1142 - 1453 361 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315653199|ref|ZP_07906123.1| ## NR: gi|315653199|ref|ZP_07906123.1| conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 103 1 103 103 151 98.0 2e-35 MPKDVQQALEEKENGKQVSVNEESNAAETQEQETANTAVEKIDADKIVQPYIIQNKKIFF SEKGLLVIEIYSNIVIADASCVSKQLVLIKKVLTMFSIAGKII >gi|308170247|gb|AEHR01000015.1| GENE 4 2542 - 3696 1340 384 aa, chain + ## HITS:1 COG:SPy0516 KEGG:ns NR:ns ## COG: SPy0516 COG0438 # Protein_GI_number: 15674620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 378 1 381 444 342 46.0 7e-94 MNIGLFSDTYFPQISGVATSIKTLKEALEQQGHSVFIFTTTDPHVDKNIVEPNIFRVASV PFVSFTDRRVAFRGLFQVAKIANEVKLDIVHTQTEFSMGLIGKYVAYSLKIPSVHTYHTM YEDYLHYVLNGHLLKPYHVKQFTKAYLYHMNGVIAPSRRVEDTLLRYGVKTPIRVIPTGV DISGINAAPVCDVRKQLGLSSSDYVILTLSRIAAEKKINRILDCLAILVDEFPNLKLVIA GDGPDVGPLKDQVLRLNLEKYVIFSGNVDHSNVANFYRMADLFVSASDTETQGLTYIESL SVGTPCVVYNTDYTRNIFDSSSLGSVFDTKQEMYDLIRSYILRTPNKADDSIFQKKLSEI SAETFAKNVAEFYDDVIMQYKRIK >gi|308170247|gb|AEHR01000015.1| GENE 5 3698 - 4741 1079 347 aa, chain + ## HITS:1 COG:lin2699 KEGG:ns NR:ns ## COG: lin2699 COG0438 # Protein_GI_number: 16801760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Listeria innocua # 1 333 1 334 341 352 53.0 7e-97 MIKINMFSKADTVQGQGVGSAYNELIGLLRKNLSSEFQVTINQYSQSDITHYHTINPTYF INSFSKNRGRKIGYVHFLPETLEGSIKLPSGAKTVLYKYVIDFYKRMDQIVVVNPIFIDK LANYGIDRSKIKYIPNFVSKSVFYEQTDAQKKQFREKVGIPDDKFVIFGDGQVQVRKGVD DFAKLAQANPDIQFIWAGGFSFGKITEGYDRLKKLVANPPKNLLFTGIITRQELVNYLNI ANLFLLPSYDELFPMSVLEAFSCGTPVLLRNLDLYKAIIDGYYMSGNNFDDFNQIIQSVL SDPEKLKRYHTLSLKASDEYSEANLTKVWREFYLEQYNLGKKMGQIK >gi|308170247|gb|AEHR01000015.1| GENE 6 4741 - 5751 413 336 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 3 324 6 326 357 134 31.0 3e-31 MNKRHIIGILFVLLISCIVICKELSTINIATLIKDANLINVFYCVLIFVTLAFSFLCESF ILVILNYEQNSLIPPFWSFVRVSLVQSLFNAITPMSTGGQPAQIVALKQMGISVGKATSV LLMKFIIYQISVFGIYIFAFVTCFQSILAKFDGIAVFIFIGFILHISSIIFLLFILFAHN FTVKLTKKIGNFLFYLIKSKKLSNWQNNVLNQINNFYVEGEKLRSNKMKLFCCFCLTLLQ LLCFYSVPFFILLALNLNCSWLAVTKINVMNTLFMSIVPIPGAEGGAEFGFQKLFSTFID SKSLLVLALFLWRFATYFLEIILGLIFWTIKPKKHY >gi|308170247|gb|AEHR01000015.1| GENE 7 5810 - 7879 1635 689 aa, chain + ## HITS:1 COG:BS_yfnI KEGG:ns NR:ns ## COG: BS_yfnI COG1368 # Protein_GI_number: 16077793 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Bacillus subtilis # 4 654 15 653 653 570 48.0 1e-162 MARLKALFNWLTKTKIGYFIILLTFFWLKNYIVYLTKFNLGVVGSTQNFLLLFNPIPAGI ILLGICLFFKGRKAYWLALLVDTILSMWLFANILYYREFSDFLSASIIKTSGSSSDNLGK SIAGILHFSDFFVFLDVAIIAILLIFKIIKIDVRNLKFKVSALVELLAIALAGLNLTMAQ KDRSGLLTRTFDNNYIVKYLGLNAFTVYDGIKTVHTSTVMAKANHNDLKSVQKYVQRHYI EPNNAYFGVAKGKNVLVIHLESFQQFLIDYKVDGKEVTPNLNKLYHSKNTLSFKNFFNQV GQGKTSDAEMMLENSIYGLQAGSAMSSYGTTNTFESAPAILGQKANYTSAVMHGGAGSFW NRDNAYKSFGYDYFFPLSFYKNKKHYYVGYGLKDKIFLSQSVKYIEHLTQPFYLKLITVT NHYPYEIDKKNQSIDKTDTGDKTVDGYVQTAHYLDQAIGELLAYLKKTKLDKNTLLMLYG DHYGISGNHHRASAQLLGKSSFNNFDNLQFQRVPLMFHMNGLKGGIKHTYGGEIDVRPTL FNLLGIKDNDLIQFGHSLLSPDNPQIVAQRNGDFVTPEYSKVEGSYYYTKSGKRIKHLTV EQKRKISLINNIVTSELSLSDRIITGNLLRFYKPDWFTTVKRKKYSYKKSDTMKELKKRE KKRKNSLWYLNNKKTTQSMFKTDAPELDK Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:32:43 2011 Seq name: gi|308170246|gb|AEHR01000016.1| Lactobacillus iners SPIN 2503V10-D contig00080, whole genome shotgun sequence Length of sequence - 1851 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 129 - 1663 99.0 # AY958899 [D:1..1547] # 16S ribosomal RNA # uncultured bacterium # Bacteria; environmental samples. Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:33:25 2011 Seq name: gi|308170106|gb|AEHR01000017.1| Lactobacillus iners SPIN 2503V10-D contig00011, whole genome shotgun sequence Length of sequence - 126723 bp Number of predicted genes - 137, with homology - 137 Number of transcription units - 51, operones - 31 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 41 - 76 5.1 1 1 Tu 1 . - CDS 155 - 4429 4533 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) - Prom 4610 - 4669 2.8 - Term 4541 - 4575 2.4 2 2 Op 1 7/0.000 - CDS 4684 - 6135 1561 ## COG0442 Prolyl-tRNA synthetase 3 2 Op 2 12/0.000 - CDS 6152 - 7408 1213 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 4 2 Op 3 32/0.000 - CDS 7418 - 8215 767 ## COG0575 CDP-diglyceride synthetase 5 2 Op 4 19/0.000 - CDS 8233 - 8952 904 ## COG0020 Undecaprenyl pyrophosphate synthase 6 2 Op 5 33/0.000 - CDS 8968 - 9525 634 ## COG0233 Ribosome recycling factor 7 2 Op 6 24/0.000 - CDS 9525 - 10250 1032 ## COG0528 Uridylate kinase - Prom 10340 - 10399 6.8 - Term 10353 - 10394 3.5 8 3 Op 1 38/0.000 - CDS 10406 - 11281 597 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 9 3 Op 2 . - CDS 11314 - 12087 1160 ## PROTEIN SUPPORTED gi|238852608|ref|ZP_04643018.1| ribosomal protein S2 - Prom 12194 - 12253 10.9 10 4 Tu 1 . - CDS 12257 - 13261 825 ## COG4123 Predicted O-methyltransferase - Prom 13474 - 13533 7.5 + Prom 13218 - 13277 7.8 11 5 Tu 1 . + CDS 13321 - 13935 512 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 13946 - 14000 9.2 - Term 13943 - 13978 2.0 12 6 Op 1 35/0.000 - CDS 13985 - 15781 225 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 13 6 Op 2 . - CDS 15771 - 17537 190 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Term 17555 - 17591 2.1 14 7 Op 1 . - CDS 17612 - 17827 324 ## COG3763 Uncharacterized protein conserved in bacteria 15 7 Op 2 . - CDS 17892 - 18137 168 ## LGAS_0794 hypothetical protein - Prom 18290 - 18349 8.0 + Prom 18182 - 18241 10.7 16 8 Tu 1 . + CDS 18261 - 18845 407 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 18851 - 18894 -0.9 - Term 18830 - 18888 10.5 17 9 Op 1 . - CDS 18890 - 19285 392 ## LBUL_0280 hypothetical protein - Prom 19364 - 19423 4.1 18 9 Op 2 . - CDS 19479 - 19670 311 ## gi|259501567|ref|ZP_05744469.1| conserved hypothetical protein - Prom 19697 - 19756 13.8 - Term 19723 - 19793 13.3 19 10 Op 1 33/0.000 - CDS 19808 - 20185 585 ## PROTEIN SUPPORTED gi|227521152|ref|ZP_03951201.1| 50S ribosomal protein L19 - Prom 20215 - 20274 5.0 20 10 Op 2 30/0.000 - CDS 20278 - 20994 899 ## COG0336 tRNA-(guanine-N1)-methyltransferase 21 10 Op 3 12/0.000 - CDS 20984 - 21505 626 ## COG0806 RimM protein, required for 16S rRNA processing - Term 21514 - 21555 5.0 22 10 Op 4 23/0.000 - CDS 21561 - 21833 406 ## PROTEIN SUPPORTED gi|42519387|ref|NP_965317.1| 30S ribosomal protein S16 - Prom 21860 - 21919 8.7 23 10 Op 5 . - CDS 21924 - 23351 1766 ## COG0541 Signal recognition particle GTPase - Prom 23455 - 23514 3.9 24 11 Tu 1 . - CDS 23531 - 23695 67 ## FI9785_748 UPF0122 protein - Prom 23722 - 23781 7.2 25 12 Op 1 . - CDS 23800 - 25479 1588 ## COG0497 ATPase involved in DNA repair 26 12 Op 2 3/0.125 - CDS 25492 - 26328 679 ## COG1189 Predicted rRNA methylase 27 12 Op 3 . - CDS 26303 - 27169 834 ## COG0142 Geranylgeranyl pyrophosphate synthase 28 12 Op 4 . - CDS 27172 - 27414 443 ## LGAS_0753 exodeoxyribonuclease VII small subunit 29 12 Op 5 7/0.000 - CDS 27407 - 28765 1376 ## COG1570 Exonuclease VII, large subunit 30 12 Op 6 4/0.125 - CDS 28755 - 29654 888 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 31 12 Op 7 10/0.000 - CDS 29661 - 30062 464 ## COG0781 Transcription termination factor 32 12 Op 8 4/0.125 - CDS 30062 - 30475 564 ## COG1302 Uncharacterized protein conserved in bacteria 33 12 Op 9 10/0.000 - CDS 30508 - 31068 716 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 31091 - 31150 6.2 34 12 Op 10 . - CDS 31152 - 32261 1327 ## COG0006 Xaa-Pro aminopeptidase - Term 32280 - 32317 2.3 35 13 Op 1 32/0.000 - CDS 32329 - 32628 438 ## PROTEIN SUPPORTED gi|116629403|ref|YP_814575.1| 50S ribosomal protein L27 36 13 Op 2 . - CDS 32645 - 32956 458 ## PROTEIN SUPPORTED gi|42519428|ref|NP_965358.1| 50S ribosomal protein L21 - Prom 33059 - 33118 3.4 37 14 Op 1 . - CDS 33123 - 34259 1368 ## COG0294 Dihydropteroate synthase and related enzymes 38 14 Op 2 . - CDS 34259 - 34858 529 ## COG0127 Xanthosine triphosphate pyrophosphatase 39 14 Op 3 2/0.125 - CDS 34851 - 36071 1191 ## COG0285 Folylpolyglutamate synthase 40 14 Op 4 2/0.125 - CDS 36119 - 36679 726 ## COG0302 GTP cyclohydrolase I 41 14 Op 5 17/0.000 - CDS 36660 - 37178 259 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 42 14 Op 6 . - CDS 37172 - 37507 238 ## COG1539 Dihydroneopterin aldolase - Prom 37564 - 37623 6.8 - Term 37588 - 37632 5.8 43 15 Op 1 . - CDS 37649 - 38794 967 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 44 15 Op 2 . - CDS 38816 - 39481 703 ## COG0775 Nucleoside phosphorylase 45 15 Op 3 . - CDS 39517 - 39768 294 ## gi|259501540|ref|ZP_05744442.1| conserved hypothetical protein 46 15 Op 4 . - CDS 39761 - 40324 772 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 47 15 Op 5 . - CDS 40330 - 40548 352 ## LJ0980b cold shock protein 48 15 Op 6 . - CDS 40548 - 43409 3503 ## COG0060 Isoleucyl-tRNA synthetase - Prom 43437 - 43496 3.2 49 16 Tu 1 . - CDS 43550 - 44377 915 ## LGAS_1197 cell division initiation protein - Prom 44397 - 44456 6.7 50 17 Op 1 . - CDS 44483 - 45724 1394 ## COG4690 Dipeptidase 51 17 Op 2 . - CDS 45736 - 45906 262 ## COG4690 Dipeptidase 52 17 Op 3 10/0.000 - CDS 45933 - 46946 839 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 53 17 Op 4 . - CDS 46954 - 47889 1008 ## COG1196 Chromosome segregation ATPases 54 17 Op 5 . - CDS 47904 - 48143 233 ## gi|309805472|ref|ZP_07699517.1| SMC protein Flexible Hinge domain protein 55 18 Op 1 6/0.000 - CDS 48278 - 50509 1857 ## COG1196 Chromosome segregation ATPases 56 18 Op 2 . - CDS 50532 - 51209 1029 ## COG0571 dsRNA-specific ribonuclease - Prom 51229 - 51288 10.6 - Term 51269 - 51319 2.6 57 19 Tu 1 . - CDS 51344 - 53095 1953 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 53132 - 53191 9.6 - Term 53503 - 53549 7.4 58 20 Op 1 49/0.000 - CDS 53550 - 54479 1267 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 59 20 Op 2 6/0.000 - CDS 54494 - 55456 1022 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 60 20 Op 3 44/0.000 - CDS 55458 - 56426 753 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 61 20 Op 4 . - CDS 56436 - 57440 586 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 57503 - 57562 10.4 62 21 Op 1 3/0.125 - CDS 57588 - 57830 368 ## COG0236 Acyl carrier protein 63 21 Op 2 . - CDS 57880 - 58881 1288 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 64 21 Op 3 . - CDS 58902 - 60263 1184 ## COG1200 RecG-like helicase 65 21 Op 4 4/0.125 - CDS 60232 - 60924 509 ## COG1200 RecG-like helicase 66 21 Op 5 9/0.000 - CDS 60926 - 62551 1904 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 67 21 Op 6 . - CDS 62614 - 62973 506 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 63019 - 63078 7.0 + Prom 62909 - 62968 10.0 68 22 Tu 1 . + CDS 63149 - 63334 282 ## PROTEIN SUPPORTED gi|42519405|ref|NP_965335.1| 50S ribosomal protein L28 + Term 63353 - 63408 7.0 - Term 63459 - 63511 12.5 69 23 Op 1 17/0.000 - CDS 63516 - 64175 711 ## COG0765 ABC-type amino acid transport system, permease component 70 23 Op 2 31/0.000 - CDS 64185 - 64823 511 ## COG0765 ABC-type amino acid transport system, permease component 71 23 Op 3 16/0.000 - CDS 64820 - 65641 1081 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 72 23 Op 4 . - CDS 65650 - 66390 290 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 66420 - 66479 6.9 73 24 Tu 1 . - CDS 66563 - 67651 1017 ## COG1363 Cellulase M and related proteins - Prom 67829 - 67888 6.8 + Prom 67697 - 67756 11.2 74 25 Tu 1 . + CDS 67818 - 69017 872 ## COG0477 Permeases of the major facilitator superfamily + Term 69146 - 69196 12.2 + Prom 69122 - 69181 5.7 75 26 Tu 1 . + CDS 69215 - 70528 1056 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 70543 - 70580 6.6 - Term 70531 - 70568 6.6 76 27 Op 1 45/0.000 - CDS 70581 - 71381 902 ## COG0842 ABC-type multidrug transport system, permease component 77 27 Op 2 3/0.125 - CDS 71368 - 72297 305 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 72450 - 72509 13.1 - Term 72485 - 72526 6.1 78 28 Op 1 21/0.000 - CDS 72538 - 73674 1274 ## COG0477 Permeases of the major facilitator superfamily 79 28 Op 2 . - CDS 73737 - 73985 202 ## COG0477 Permeases of the major facilitator superfamily - Prom 74023 - 74082 7.0 - Term 74035 - 74077 4.0 80 29 Op 1 13/0.000 - CDS 74095 - 74856 173 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 81 29 Op 2 9/0.000 - CDS 74849 - 75748 969 ## COG4120 ABC-type uncharacterized transport system, permease component 82 29 Op 3 . - CDS 75748 - 76743 1201 ## COG2984 ABC-type uncharacterized transport system, periplasmic component - Prom 76823 - 76882 7.7 + Prom 77044 - 77103 6.7 83 30 Tu 1 . + CDS 77137 - 78354 1085 ## SAG1837 prophage LambdaSa2, lysin, putative - Term 78351 - 78392 7.6 84 31 Op 1 . - CDS 78393 - 80012 1566 ## COG0366 Glycosidases 85 31 Op 2 34/0.000 - CDS 80070 - 81446 209 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 86 31 Op 3 . - CDS 81440 - 82129 476 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 87 31 Op 4 . - CDS 82129 - 82737 570 ## FMG_1400 hypothetical protein - Prom 82764 - 82823 11.2 88 32 Tu 1 . - CDS 82860 - 83018 167 ## gi|309804229|ref|ZP_07698306.1| conserved hypothetical protein - Prom 83120 - 83179 2.8 89 33 Op 1 . - CDS 83196 - 83393 241 ## gi|315653345|ref|ZP_07906267.1| minor capsid protein 90 33 Op 2 . - CDS 83398 - 83643 71 ## gi|315653345|ref|ZP_07906267.1| minor capsid protein - Term 84111 - 84145 -0.7 91 34 Op 1 . - CDS 84171 - 84344 93 ## gi|259501498|ref|ZP_05744400.1| hypothetical protein HMPREF0520_1008 92 34 Op 2 . - CDS 84287 - 84733 453 ## FI9785_838 hypothetical protein 93 34 Op 3 . - CDS 84750 - 85130 502 ## gi|309804265|ref|ZP_07698342.1| hypothetical protein HMPREF9214_0283 94 34 Op 4 . - CDS 85130 - 85498 412 ## gi|309804204|ref|ZP_07698281.1| phage protein, HK97 gp10 family 95 34 Op 5 . - CDS 85482 - 85886 421 ## FI9785_834 hypothetical protein 96 34 Op 6 . - CDS 85903 - 86775 1200 ## FI9785_832 hypothetical protein 97 34 Op 7 . - CDS 86789 - 87373 786 ## gi|309804258|ref|ZP_07698335.1| conserved hypothetical protein 98 35 Op 1 . - CDS 87489 - 87749 282 ## gi|309804275|ref|ZP_07698352.1| hypothetical protein HMPREF9214_0288 99 35 Op 2 . - CDS 87826 - 88083 207 ## gi|309804242|ref|ZP_07698319.1| hypothetical protein HMPREF9214_0289 100 35 Op 3 . - CDS 88080 - 88571 619 ## gi|309804270|ref|ZP_07698347.1| hypothetical protein HMPREF9214_0290 101 35 Op 4 . - CDS 88605 - 88889 505 ## gi|309804308|ref|ZP_07698385.1| hypothetical protein HMPREF9214_0291 102 35 Op 5 . - CDS 88894 - 90486 1463 ## COG5585 NAD+--asparagine ADP-ribosyltransferase 103 35 Op 6 . - CDS 90479 - 91909 1537 ## FI9785_828 bacteriophage portal protein 104 35 Op 7 . - CDS 91923 - 93152 848 ## LGAS_0605 phage terminase large subunit 105 35 Op 8 . - CDS 93142 - 93609 480 ## Apre_0833 hypothetical protein - Prom 93636 - 93695 4.8 - Term 93668 - 93703 3.1 106 36 Op 1 . - CDS 93714 - 94109 464 ## LCRIS_01740 hypothetical protein - Term 94112 - 94156 7.2 107 36 Op 2 . - CDS 94159 - 94347 292 ## gi|259501593|ref|ZP_05744495.1| HicA family toxin-antitoxin system - Prom 94430 - 94489 10.4 108 37 Tu 1 . - CDS 94958 - 95263 392 ## LMHCC_2978 phage protein - Prom 95351 - 95410 5.9 + Prom 95196 - 95255 6.4 109 38 Op 1 23/0.000 + CDS 95364 - 95933 725 ## COG2963 Transposase and inactivated derivatives 110 38 Op 2 3/0.125 + CDS 95951 - 96751 265 ## COG2801 Transposase and inactivated derivatives + Term 96760 - 96799 5.2 + Prom 96768 - 96827 7.3 111 39 Tu 1 . + CDS 97076 - 98197 923 ## COG0582 Integrase + Term 98198 - 98228 2.0 - Term 98519 - 98569 3.7 112 40 Op 1 7/0.000 - CDS 98749 - 99960 1375 ## COG0282 Acetate kinase 113 40 Op 2 . - CDS 99971 - 100972 1158 ## COG0827 Adenine-specific DNA methylase 114 40 Op 3 . - CDS 101063 - 101236 101 ## gi|309809553|ref|ZP_07703411.1| hypothetical protein HMPREF9215_0288 115 40 Op 4 . - CDS 101220 - 101711 350 ## FI9785_1299 hypothetical protein 116 40 Op 5 . - CDS 101698 - 101847 70 ## gi|259501493|ref|ZP_05744395.1| hypothetical protein HMPREF0520_1003 117 40 Op 6 . - CDS 101906 - 102337 258 ## LGAS_1272 hypothetical protein 118 40 Op 7 6/0.000 - CDS 102321 - 102647 425 ## COG4537 Competence protein ComGC 119 40 Op 8 24/0.000 - CDS 102662 - 103657 1037 ## COG1459 Type II secretory pathway, component PulF 120 40 Op 9 . - CDS 103629 - 104603 1113 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB - Prom 104644 - 104703 9.6 - Term 104667 - 104716 6.0 121 41 Op 1 . - CDS 104726 - 111808 9189 ## HMPREF0421_20949 hypothetical protein - Prom 111887 - 111946 11.5 122 41 Op 2 . - CDS 111968 - 112459 420 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 112555 - 112614 10.1 + Prom 112506 - 112565 5.9 123 42 Op 1 . + CDS 112610 - 113041 429 ## COG3279 Response regulator of the LytR/AlgR family 124 42 Op 2 . + CDS 113038 - 113484 456 ## LAR_1321 hypothetical protein + Term 113508 - 113556 11.5 + Prom 113561 - 113620 7.3 125 43 Op 1 6/0.000 + CDS 113668 - 114927 995 ## COG1457 Purine-cytosine permease and related proteins 126 43 Op 2 . + CDS 114939 - 116174 1588 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 116324 - 116368 6.0 - Term 116709 - 116756 -0.4 127 44 Op 1 . - CDS 116770 - 117435 574 ## TDE0330 CRISPR-associated Csn2 family protein 128 44 Op 2 4/0.125 - CDS 117432 - 117638 243 ## COG3512 Uncharacterized protein conserved in bacteria - Prom 117676 - 117735 2.0 129 45 Op 1 5/0.125 - CDS 117743 - 118621 692 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 130 45 Op 2 . - CDS 118618 - 120597 1766 ## COG3513 Uncharacterized protein conserved in bacteria - Prom 120721 - 120780 7.9 131 46 Op 1 . - CDS 120834 - 121388 383 ## COG3513 Uncharacterized protein conserved in bacteria 132 46 Op 2 . - CDS 121382 - 122002 528 ## COG3513 Uncharacterized protein conserved in bacteria - Prom 122212 - 122271 7.3 133 47 Tu 1 . - CDS 122296 - 122724 601 ## COG3513 Uncharacterized protein conserved in bacteria - Prom 122766 - 122825 7.5 - Term 122938 - 123003 1.1 134 48 Tu 1 . - CDS 123015 - 123746 1087 ## COG0217 Uncharacterized conserved protein - Prom 123847 - 123906 7.4 - Term 123763 - 123819 -0.8 135 49 Tu 1 . - CDS 123929 - 124720 875 ## COG3177 Uncharacterized conserved protein - Prom 124810 - 124869 3.3 136 50 Tu 1 . - CDS 125252 - 125548 347 ## LJ1234 hypothetical protein - Prom 125763 - 125822 6.6 + Prom 125779 - 125838 4.5 137 51 Tu 1 . + CDS 125860 - 126690 827 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin Predicted protein(s) >gi|308170106|gb|AEHR01000017.1| GENE 1 155 - 4429 4533 1424 aa, chain - ## HITS:1 COG:BS_polC KEGG:ns NR:ns ## COG: BS_polC COG2176 # Protein_GI_number: 16078721 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus subtilis # 8 1424 11 1437 1437 1441 51.0 0 MEDKNKLFLRLLEQIQIIDNIAQNSDLKKGEIENVDVYAKERKWVIHVFLPKVLEFDTYI MLYKALHQTFDPFVNVDLVVRCQLDDNSELNNYWEFAIEHAEKLSASVKEFLIHTKPCYL DANWQITCQNNFVQSMFTSEVLDAIASEFNKYGFKDLSFNINLEDNTKEDIKQLKQQQLE HENAMQKMYEQSPEQSQEYSPEYNPEHNMEITKIKDLEDGNKDIFVEGHVFNVESRELKS GKVILTGEITDYTDSISFKKFLSSKDKLADLEDIKPGVWVQIQGNVLDDTFQHEIVLNIK SIKLIKHIGRQETYEGKQKRVELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHAD VQAFPEAYVAGKKNGLKIIYGYEANMINDQALLVLNPANMDYRGQEYVIFDVETTGLSSV YDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSITDEMVQNADDENIVIRQFQ EFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAK KYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHM TVLAINKVGLKNMYKLVSLASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQ KGYDATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVAT SDAHYIDKKDAIYRKILLSAQKANRGKNYELPDLHFYTTQEMLDAFSFLNPKIAEEIVIK NTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELK SIISNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGITEVNPLAPHYRCPNC KYSQFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDY QPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYVKHYEDENELKLRNAELDRLSQGASG VKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHDNILKFDILGH DDPTMIRMLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEFGTKF VRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIGCRDNIMTDLIH WDVPPEVAFSTMESVRHGKGISDENMAILSKNKNIPDWYIQSCLKIKYMFPKAHATAYIL MALRIAWFKVYYPVIYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKT LLTVLEIANECLERGININMVDIEKSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAA RDEQPFLSKEDLSIRGKVSQTIMEYFENNGVLDGLPDQNQLSLF >gi|308170106|gb|AEHR01000017.1| GENE 2 4684 - 6135 1561 483 aa, chain - ## HITS:1 COG:BS_proS KEGG:ns NR:ns ## COG: BS_proS COG0442 # Protein_GI_number: 16078720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Bacillus subtilis # 1 482 1 481 564 534 53.0 1e-151 MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRNAEKIIEEE MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID TFSPEKEELKPLEKIATPDCATIEQLSEFLHVPNTRIVKSILYIVDDKKVLVLIRGDKQV NEVKLQNALDADSEPRVATNEELLSIVKATKGGVGPVKAAYADYIIADETVKGLYNVVVG ANESDYQYINANIDRDFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYT NSMNAKFLDQNGKTQPIIMGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMN MKK >gi|308170106|gb|AEHR01000017.1| GENE 3 6152 - 7408 1213 418 aa, chain - ## HITS:1 COG:lin1355 KEGG:ns NR:ns ## COG: lin1355 COG0750 # Protein_GI_number: 16800423 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Listeria innocua # 1 416 1 419 420 287 38.0 3e-77 MKSILIFLVIFGILVFVHEFGHFFVGKKCGILVREFSIGMGPKLFQVMKKKTTYTIRWLP IGGYVRFAGPDDIAKIDPGATVVLQFNDNGEVVRIDNSGSQMPISGIPVQVIESDLVNRL IIRGYKNGDENENITYSVNHDATIIEKNGSELIIAPEDTQFQNAKVLKKIASNVAGPLMN IILGFIVFIGLSISGPGAPTTIINKTIDNSPAQRIGLKNGDQVKEIEHQKVSQLEDISKI IAEYKGKKVEVVVLRNNSYRKFKIKPMKVVDNGQTLYQLGFICKLDNNLFSKLAHGCKTS LRTMGLIFNALSSLIRHFSLDKLSGPVGIYSQTRKMSDLGFAYVVTFLAMISINLGIVNL LPIPGLDGGKLLLNVVELVTGKPLSPEKEELVNIIGFVFLLILIIAVTGNDIYRFFIK >gi|308170106|gb|AEHR01000017.1| GENE 4 7418 - 8215 767 265 aa, chain - ## HITS:1 COG:lin1353 KEGG:ns NR:ns ## COG: lin1353 COG0575 # Protein_GI_number: 16800421 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Listeria innocua # 1 265 1 262 262 216 50.0 3e-56 MKQRIITALVALIFFIPVLLLGGYWIDVMACLLACCAISEIFIMKKQILISINFLISLLA TLTLTLPDKFFNFLPVFLGKIQLFCILNMLLLTITVLSKNKTSFDDVGTYVLGSIYVGAG FHYLAAIRNINDGYGLAILGFALIVVWASDIGAYVFGRKYGKRKLWPVISPNKTWEGSIG GIICAIVCTTIYVLIVPTGRNQLLLIGLSIVLSVVGQIGDLVESAIKRFYGVKDSGKILP GHGGILDRFDSLLFVLPVVAYIGIM >gi|308170106|gb|AEHR01000017.1| GENE 5 8233 - 8952 904 239 aa, chain - ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 10 237 26 250 252 271 56.0 6e-73 MKQENKRLDHLAIIMDGNGRWAQERHLPRIIGHRSGMNKVKEIALAANELGVKVLTLYAF STENWGRPRDEVNYLMKLPINFFDKFMPELQKNNIKVNIMGFNDKLPLATAEIIKKAEQE TADNDGMILNFAFNYGSRQEITAAISKIALDIQNKKIEVDSINEQLVSDYLMTAKFGDYA DPDLLIRTSGEERLSNFMLWQLAYSEFYFTKTYWPDFTTDEFKKIVEEYQHRDRRFGKI >gi|308170106|gb|AEHR01000017.1| GENE 6 8968 - 9525 634 185 aa, chain - ## HITS:1 COG:SP0945 KEGG:ns NR:ns ## COG: SP0945 COG0233 # Protein_GI_number: 15900824 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Streptococcus pneumoniae TIGR4 # 1 182 1 182 185 196 60.0 2e-50 MSNVIIEKAKANMSKSISVFEKELGGIRAGVANASLLDGIKVEYYGVPTPLTQMSSITIP EARVLMITPFDKTTLNNIEHAILASDLGITPANDGSVVRIVIPQLTGERRIEIAKKVGKL AEQAKIAIRNIRREGMDALKKQQKDGEITEDDLHKFEKDMQKITDNATKDVDALADKKSK EITKA >gi|308170106|gb|AEHR01000017.1| GENE 7 9525 - 10250 1032 241 aa, chain - ## HITS:1 COG:L70624 KEGG:ns NR:ns ## COG: L70624 COG0528 # Protein_GI_number: 15673992 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Lactococcus lactis # 1 238 1 238 238 334 68.0 1e-91 MSQLKYKRVILKVSGEALAGSEGRGINPEVIAHLAMEVKKIHDMGVQIGIVCGGGNMWRG ETGANLGMERAQADYMGMLATIMNGLALQDALENLGVPTRVQTSIEMRQIAEPYIRRKAI RHLEKGRVVIFGGGTGNPYFSTDTTAALRAAEINADVILMAKNGVDGVYSADPKIYPEAV KFDELTQLDIIAKDLKVMDRTASSLSMDNNIPLIVFNVNEAGNIKKVIEGENIGTVIKGG K >gi|308170106|gb|AEHR01000017.1| GENE 8 10406 - 11281 597 291 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 286 1 275 283 234 46 2e-60 MAKITAAQVKELRERTGAGMMDVKKALVKADGDMDKATDILRESGAAKAAKKSGRIAAEG LAAFDVEGNNAVLVEINSETDFVSSNDKFVKFVDDVTKAILAAKPADLEAAMNVPLGEGT IASAETELTAVIGEKITLRRFTILTKKDNEVFGAYKHNNGAIIAVTILDGDNAEAAKNIA MHVAAINPEYLDKSQVPAEVLEHQTDVFTKETEKEGKPSKIIPKIVEGRMNKYLAEICLV DQPYVKDSDMTVAEYVKSVKSEVKNFVRYEVGEGIEKKQEDFAAEVREQMR >gi|308170106|gb|AEHR01000017.1| GENE 9 11314 - 12087 1160 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238852608|ref|ZP_04643018.1| ribosomal protein S2 [Lactobacillus gasseri 202-4] # 1 256 1 258 261 451 85 1e-126 MTVVTMKQLLEAGVHFGHQTRRWDPKMAPYIFTQRNGIYIIDLQKTIKMLDDAYNFMKDV ATDGGVFLFVGTKKQAQDAVKEEAIRAGQYFINERWLGGTLTNWSTIQSRVQRLKQLKKM SEDGTFELLPKKEVAVLTKELDKLQRFLGGIEDMPRIPDVMFVVDPKKEKIAVHEANILG IPVVAMVDTNTDPEPVDVVIPSNDDAIRAIRLIAGAMADAVIEGKQGQDDEKSVEAEFTE KSEADDEKSIEEIADED >gi|308170106|gb|AEHR01000017.1| GENE 10 12257 - 13261 825 334 aa, chain - ## HITS:1 COG:SP1536 KEGG:ns NR:ns ## COG: SP1536 COG4123 # Protein_GI_number: 15901380 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 246 5 247 249 185 38.0 1e-46 MEILKSNERIDYMYSDHLKVIQRKDAFSFSLDTLLLAYFAKEKIHDRDKVVDLCCGNGAA TLYMSYFNLAHYDAVEIQPEIASQAKRSVSLNQLENRITVHCINALDAPKNLGKDKFDVV TVNPPYFKVPDGHRINPNQQKAIARHEILINLEQVIIVASQLLKMKGKLFIVHRPERLAE IIHYCLSNHMGVKNIQPFAPQRGQNANLLVVEAVNNATFDGLVLKDPIVVHNNDNSFTEE IENIIHENKAASTKTENKKYYFYCLKCADGSFYGGFTDNLKKRIEAHNSGKGAKYTKSRR PVKLLYFEEFDDKKAALKREYWFKHHDRKWKENF >gi|308170106|gb|AEHR01000017.1| GENE 11 13321 - 13935 512 204 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 194 1 196 249 191 46.0 1e-48 MFYKFLRSTVRIIFWIINGHLHIHNSNYIPEGNYILAAPHRTWWEPFLFAIAAKNTEFVV IAKKELFKNPIYRFLLKKCNAFPVDRANPGPSAIKIPVKELKAGQRSFMIFPSGTRHSDQ LKSGVFIIAKLANKPIVPVIYQGPLTFKGILKRQNVEIRFGKPIYLDRKIKINNENTPIL YAKLENAWQELDNEQNPNFKYIPK >gi|308170106|gb|AEHR01000017.1| GENE 12 13985 - 15781 225 598 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 360 583 132 355 398 91 29 2e-17 MTNNKQESIWAHSIPVKEQLKIFVRLLYFVRPYKLEMILALVGAFLVSVINMLLPFVLQY FIDKYLIKSHPALKLILFFALLFAMGTIMKAIIQFIYEYFYAVGSEKTLENVRRCLYKKM HSLGMRYFDQTPAGSIVSRITNDTMTLSRFLSVWASAVIGIFSLVTSFVAMYCTNKPASL IVLAFLPILLFIIWFYSRNSSRLYRKFREYLSDINTNLNEAIEGVSLIQQFKQEKRMMSL FEKKNIALMKTRQRMILLNAFLLSPLTSLLYSLALIASLLYFGYPLHETFIPAGVVYAFS QYIATFFNPIAMVMDTMTLFQDGIVAGKRIFALLDNPELEPKQSANAKDDNIIFNGKVEF KHVSFSYDGKNEILHDISFSIDPGKTLGIVGHTGSGKSSIINVMLRFYEFYQGQILIDGV DIKNYSKSELCKKIGLVLQEPFMFYGDIASNIRLYNKDITDEELVNAAKNVQADGFIQKM ADGYKTRVLEGGEGLSQGQKQLISFARTLVTNPKILVLDEATANVDTETETLIQQGLDKL RQGRTTLAIAHRLSTIANADKIIVLDKGRIIESGTHESLLAKKGYYYDLYTLQTNSEN >gi|308170106|gb|AEHR01000017.1| GENE 13 15771 - 17537 190 588 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 353 562 34 249 329 77 30 2e-13 MGIYQKLGWFFKKHKKRYIFGIIMLMLTSLANLVPPRILGLMADQLNKKQITWFSYFKYT GLILVAALSLYVLRLLWRSLIWGGATILEKELRAKLFAHFMKMDRTFFQNNRTGDLMAHA TNDVMAVQEVAGDGILTVVDAITLGGCTAVAMILFVDLRLTLIALLPMPLLAIFARYFGD KLYVAYDKSQAAFSKLNNKTQESVSGIKVLKTFGQAKQDTNSFNKMVDETICINKQVFKW QSMFDPLGSLLIGLTYVIAIIYGSILVNNQSITVGQLVSFVAYISNMVWPMFAIGYLFNI LERGSASYDRIEKLLVQKPLITDKNADSLLNIQDLHSDLEFNIDSFAYPDDVDHNILKNI HFTLKPGQTLGLVGKVGAGKTTLIKLLLREYDNYAGNIKFGGENIQKIPLKELLEAISYV PQKNFLFSTTIAGNIAFSNPDATMEEIQAAAKKAGLHDDIMAMPEQYETIVGEKGVSLSG GQRQRMSIARALLKDSRVLILDDALSAVDAKTEGIILHNLKAEMHDKTALIASHKLSSVM DADLILVLKHGQIVEQGVHDELLKQKGWYAKMWERQELQSKVGENIDE >gi|308170106|gb|AEHR01000017.1| GENE 14 17612 - 17827 324 71 aa, chain - ## HITS:1 COG:BH2350 KEGG:ns NR:ns ## COG: BH2350 COG3763 # Protein_GI_number: 15614913 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 70 1 70 72 57 45.0 5e-09 MNYIWIILIIVAFLVGLAAGFYGARLYMKKYFKENPPISEDMIAAMMSQMGQKPSAKKLN QVMNMMKHSQR >gi|308170106|gb|AEHR01000017.1| GENE 15 17892 - 18137 168 81 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0794 NR:ns ## KEGG: LGAS_0794 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 5 81 11 87 87 68 66.0 6e-11 MSEADEKLVKRINELYHLSKQRKLTELEIKEQKKLRLQFLANFRAGFKQQIEDIVFVDEK GNEVTSEKAKAVQRKKGLRKD >gi|308170106|gb|AEHR01000017.1| GENE 16 18261 - 18845 407 194 aa, chain + ## HITS:1 COG:BH2356 KEGG:ns NR:ns ## COG: BH2356 COG1974 # Protein_GI_number: 15614919 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Bacillus halodurans # 9 192 7 206 207 100 33.0 2e-21 MELTNDKNKQLAILSFIYNYISKNNFPPTVREICDGIGLSSTATVHGHLLRLEKKGWIVR NAAKPRAIEITQLGNKKLNLDSKAIPLVKNIRSKKPYFAKSDIIDQFPMLPNLQNYDNQL LIWQYPDTSLNELQIMNNDMLIIHLKNQEININDIIVYANSFDKIKLAKLDHHFKSKHIK ILGTVVGIYRNLTN >gi|308170106|gb|AEHR01000017.1| GENE 17 18890 - 19285 392 131 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0280 NR:ns ## KEGG: LBUL_0280 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 9 130 165 284 285 94 42.0 1e-18 MTNEKMDKLIGYRDAKDDAGLRQIKLNDSITAAVDAGAGQQYLHFVKGNWSIIVHASSIM NQSAEKPALKLLNLIEKYGLPKTTGKSTIYITAGKSKGSLNNVFKWQLNDKYYQLDTHSL TTALKMLSSLE >gi|308170106|gb|AEHR01000017.1| GENE 18 19479 - 19670 311 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501567|ref|ZP_05744469.1| ## NR: gi|259501567|ref|ZP_05744469.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_05589 [Lactobacillus iners AB-1] putative lipoprotein [Lactobacillus iners LactinV 03V1-b] putative lipoprotein [Lactobacillus iners LEAF 2062A-h1] putative lipoprotein [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] putative lipoprotein [Lactobacillus iners LactinV 03V1-b] putative lipoprotein [Lactobacillus iners LEAF 2062A-h1] putative lipoprotein [Lactobacillus iners SPIN 1401G] # 1 63 1 63 260 104 100.0 2e-21 MNKKKLFVGTLMLALMLSGCTKQDDRSAINVKAHNNSSTKVNKKVVEANNKKENSRLIFF NKK >gi|308170106|gb|AEHR01000017.1| GENE 19 19808 - 20185 585 125 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227521152|ref|ZP_03951201.1| 50S ribosomal protein L19 [Lactobacillus gasseri JV-V03] # 1 125 1 125 125 229 90 4e-59 MNAVEGEIFMDPLIAELTKEQLRTDIPEFRAGDTVRVHVRIVEGTHERIQMFEGVVIKKK GAGISATYTVRKIASGVGVERTFPVNDPRVAEVEVLRHGRVRRAKLYYLRDRHGKAARIA EKRRG >gi|308170106|gb|AEHR01000017.1| GENE 20 20278 - 20994 899 238 aa, chain - ## HITS:1 COG:SP0779 KEGG:ns NR:ns ## COG: SP0779 COG0336 # Protein_GI_number: 15900673 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 235 1 235 239 263 54.0 2e-70 MKINVLTLFPDMFAPVQQSMLGRGLEDKKWNLNLINFRDFTSDIHHHVDDSPYGGGAGMV LQIMPIKKALDTIENKGKVIITAPQGKTFNQEMAREWAQEDNLTFICGHYEGFDYRIYDF VDEIVSIGDFVLTGGELPTMSMIDATVRLLPGVLGNAASPVDESFSHGLLEYPQYTRPAD FEGKKVPEVLMSGNHQKIAEWRLKESLRMTYKKRPDMLAYRVLTAQEQKLLEEIKRES >gi|308170106|gb|AEHR01000017.1| GENE 21 20984 - 21505 626 173 aa, chain - ## HITS:1 COG:BS_ylqE KEGG:ns NR:ns ## COG: BS_ylqE COG0806 # Protein_GI_number: 16078665 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Bacillus subtilis # 1 172 1 174 174 122 42.0 3e-28 MTEYYFVGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYISVGDQKVKMTVETARFHKQ AYLVKFLQINDIDEANRIVNKNLYVSDEDQTDLPKGSYYIHQLIGLDVFDYETKTKIGIL TDIEMPGANDIWEITPNKGKIFWIPNISSVVKQVDLVNKKIEVILLEGLRDEN >gi|308170106|gb|AEHR01000017.1| GENE 22 21561 - 21833 406 90 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519387|ref|NP_965317.1| 30S ribosomal protein S16 [Lactobacillus johnsonii NCC 533] # 1 90 1 90 90 160 83 2e-38 MSVKIRMRRMGSKRKPFYRLVVADSRMPRDGRFIEEVGFYNPLSDTDSVKLDEEKVFAWL QKGAQPSDTVRSLLSKAGLMKKYHEAKYNK >gi|308170106|gb|AEHR01000017.1| GENE 23 21924 - 23351 1766 475 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 455 1 464 523 532 61.0 1e-151 MAFENLSEKLQKALRKLTGKGKISENDINQASREIRLALLEADVNFKVVKKFIKTIKAEA LGKEVQESLNPGQQIIKIVNDELTKMMGSDTASIIEAKHIPTIIMMVGLQGTGKTTTVGK LANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLDVPVYSENNTDVVAIVKNGLMQAD RNHNDYVIIDTAGRLEIDDQLMDELKNIVDVAHPENIILVADAMTGQVAATVAEGFNSKL KLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMASRILGMGDM LSLIEKAQQDFDAKEAEKVAQKMRENTFDFNDFVDQMDQMQKMGPLDQIIKMIPGMANNP ALKNFKVPDKQIAHTKAIVYSMTPAEREDPDLLNPSRRRRIAGGCGLSVVEVNRMIKQFK QAKDMMQKVTSGNFKGLSNLPGMDTPMAKMAMKSMSKNFKKNKQKRLKKIKRFHS >gi|308170106|gb|AEHR01000017.1| GENE 24 23531 - 23695 67 54 aa, chain - ## HITS:1 COG:no KEGG:FI9785_748 NR:ns ## KEGG: FI9785_748 # Name: ylxM # Def: UPF0122 protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 54 1 54 113 72 74.0 4e-12 MNELQKNELYSNLYGFYGKLLTKRQQDYFEDYYYSDLSLGEIADNHGVSRQAVF >gi|308170106|gb|AEHR01000017.1| GENE 25 23800 - 25479 1588 559 aa, chain - ## HITS:1 COG:SP1202 KEGG:ns NR:ns ## COG: SP1202 COG0497 # Protein_GI_number: 15901065 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Streptococcus pneumoniae TIGR4 # 1 553 1 550 555 379 40.0 1e-104 MLVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSRAQIDMIRSGES KAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTINVLK NLSQYLVDIHGQRDMQILMDQDLHINLLDNFANNDFKESLCQYQKIYAKWQEIKQRLSAI RKNAQEIAQKHDILEYQLNELKAANLTDEKEDERVDDEYRQLTNYQKIMTAANYFMQLYE DEQGLSTLLDDGQKTASELAGYSVQFSNFEKTFNDGVYALEDAHEELTSIIDNLEFDSEH YAYLTERINLLNTLKKKYGPTLKDVFIFYDNIQREINQFDNQYFDEEKLNKDLQSLQAKL MTYANELTQARKNNAKILEKKIKQELSSLYMDKARFVIKIEPCNTFNKFGLDKVAFMIAT NPGDDLHPLVRIVSGGEQSRLLLALKAIFSESEPVGTMIFDEIDTGVSGRVAAAIGKKMH KIGLSKQVIAITHSPQVAAASDHHFAISKIVKDGETFTKAISLNKDETVITIAKMMAGKD ITEISKQNALELITKLHNE >gi|308170106|gb|AEHR01000017.1| GENE 26 25492 - 26328 679 278 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 11 274 5 268 274 290 56.0 2e-78 MICIERHYNGKKRADVLLFEQGLFYSRTEAQRAIMAGLISDHNHQRIDKSGEKFPINEVF YVKKDSRKYVSRGGYKLEKALNVFNIDLTDKACLDIGASTGGFTDVALQNHAKLVYALDV GYNQLSWKLRDNPQVIVMEKQNFRYSTPADFTEGLPDFAMTDVSFISLDLIMKPMFEILK NNCDAVCLIKPQFEAGPENVGKNGIVHDHRVHCNVIEHTILEAQKIGFNVINLDYSPIKG GKGNIEFLIHLRKDLNHLGENLWQGDIEKLVLAAVADL >gi|308170106|gb|AEHR01000017.1| GENE 27 26303 - 27169 834 288 aa, chain - ## HITS:1 COG:slr0739 KEGG:ns NR:ns ## COG: slr0739 COG0142 # Protein_GI_number: 16329282 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Synechocystis # 30 270 38 281 302 170 40.0 2e-42 MKLTDFSELYLPQINSFLKEQLECTINDHKFSEIMSYSVLAGGKRLRPLLFLATLEILSH PISEKEIKIACGIELIHTYSLIHDDLPAMDNDDYRRGKLTSHKKWGEAEAILAGDALLPL GIQWIAEASNSYELIKVITRAIGPNGMAGGQYMDIDSTNNLSYKRNETFIDKMEFLKTGC LIVASVQMAAEYASSSDKVQMNLLHFAEAFGRAYQIYDDIVDIMQTSVQAGKKTHKDADN GKNNTLTMLGLEKSQAELSDLIARGKVAIKDIDNQLLSDFFDLYRKAL >gi|308170106|gb|AEHR01000017.1| GENE 28 27172 - 27414 443 80 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0753 NR:ns ## KEGG: LGAS_0753 # Name: not_defined # Def: exodeoxyribonuclease VII small subunit # Organism: L.gasseri # Pathway: Mismatch repair [PATH:lga03430] # 1 80 1 80 81 77 71.0 2e-13 MSDQKNTFEEQLKQLQDIVTKLEGGNVPLEDALNQFQEGVKLSRELEQKLNDAEKIVAKL IDKDGNVKQLNPEDSNSPEE >gi|308170106|gb|AEHR01000017.1| GENE 29 27407 - 28765 1376 452 aa, chain - ## HITS:1 COG:lin1398 KEGG:ns NR:ns ## COG: lin1398 COG1570 # Protein_GI_number: 16800466 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Listeria innocua # 6 418 5 418 450 318 40.0 1e-86 METSPKYLTVTDLNFYLSKKFKNDPYLHKVFLQGEVSNFRLRMNSTQYFSLKDEKSKINA VMYKSFFEKVKFKLVEGMKVYVSGYIDLYSPQGSYQFYVHTIEPAGLGALFEQLRQLREK LDKEGLFADSHKKKIPKFPDKIAVVTSASGAVIHDIMVTANRRFPHVEIDLFPTIVQGKD AAASIIASLQQIAASQDKYDVVIIGRGGGSLEDLWPFNEEMVVRQIYSMTMPVISSVGHE TDTTLSDLVADKRAATPTAAAEYATPELSAITLQIIELRTHLYAAIRSIINSDKILFNRT KNSVFLREPQRFYDEKMQTLDLLEQKLEQVANNYLLNVKTKYQLVNQSLLSTNPHQIIKH HYQELIFKTQNLNKSMCYLINNNKNNFYNLSQKLDDNSPLKAISRGYVYTANEDGKTVTS VHQICENDILNLNFKDGLVKTRVLKIKGENHE >gi|308170106|gb|AEHR01000017.1| GENE 30 28755 - 29654 888 299 aa, chain - ## HITS:1 COG:SPy1502 KEGG:ns NR:ns ## COG: SPy1502 COG0190 # Protein_GI_number: 15675405 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pyogenes M1 GAS # 16 286 1 273 284 261 49.0 2e-69 MRSAVPTSFFKGDLYLTLILDGKEPAKKIIDELTLEVEHLKAKNILPTFCVIEVGEDPAS KIYLRLKRKLAKKIGINEQTIKFPGDIRQDELIDKIKELNADPHVDAIMVQLPIPEHINT RLVLEAIDPAKDADGFTPYNQGRMWQGQVNIIPATVRSIMTILDYYQLNVEGKNALIIGR SIIVGKPVASQLLARNATVTIAHSHTRKLQELTLLNDIIISDVGRAHLITKNMVKPGSIL IDVGMNRENGKLMGDIEYDDCLPIAEAITPVPGGVGPLTVANLMKQVIILTKLRHNYGN >gi|308170106|gb|AEHR01000017.1| GENE 31 29661 - 30062 464 133 aa, chain - ## HITS:1 COG:L92686 KEGG:ns NR:ns ## COG: L92686 COG0781 # Protein_GI_number: 15672676 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Lactococcus lactis # 41 131 233 322 323 70 39.0 7e-13 MTQHDVRVIAMQALYLADQVHEHEDVDAIKKKTMDVLDIKEFPDYAYEILQGVMKEKSSI DANLAKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDEFSSAKSK GFINGILANFIDK >gi|308170106|gb|AEHR01000017.1| GENE 32 30062 - 30475 564 137 aa, chain - ## HITS:1 COG:BS_yqhY KEGG:ns NR:ns ## COG: BS_yqhY COG1302 # Protein_GI_number: 16079489 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 119 2 120 135 80 38.0 8e-16 MPESSTILLSNNENGDETRVDLGVLEVILGIAAKKVDGVNEMRGSLKSSIDKIFGRSNQG KGVSLTNRNGNLIADVYAYFDYGVNVPKVALELQKQLGLQLEQMTNLKLVETNIHVVGLI SEDDKNNTKVEYKEVKN >gi|308170106|gb|AEHR01000017.1| GENE 33 30508 - 31068 716 186 aa, chain - ## HITS:1 COG:lin1392 KEGG:ns NR:ns ## COG: lin1392 COG0231 # Protein_GI_number: 16800460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Listeria innocua # 3 184 1 185 185 220 61.0 1e-57 MTMISVNDFKNGLTIQYNNDIWRIVEFQHVKPGKGGAFVRSKLKSLKTGAVQDYTFRSTA KVEDADVQTKTMQYLYNDGTSFVFMDMATYEQLEVPETQAEAEAKFLKENMVVNIIMHDG KTLGIEVPNTVDLVVKETAPATSTGSGKPATMETGLVVTVPMFINVGDVLTINTAGNGSY VSRANK >gi|308170106|gb|AEHR01000017.1| GENE 34 31152 - 32261 1327 369 aa, chain - ## HITS:1 COG:BH2800 KEGG:ns NR:ns ## COG: BH2800 COG0006 # Protein_GI_number: 15615363 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Bacillus halodurans # 14 368 3 353 355 267 43.0 2e-71 MDAKSKLLTLINARIEKVTKLIKEKDADALIIMNQANYRYLTNFTGEEAELILCANGDRI LLSDSRFAGQIKKQAPGEMKVIMKHKNSVSEITEQLRHLSLKKVLVEGEAISAIDYQNLV NSNSDIEFEMALELVEVARNVKDELELDALKQAIAISSQSFTEILPMLQPGVTEREIGAK LDYLFKLNGGDGPSFDTIIASGYRSSWAHGVASDKKLQKGELVVIDFGSFYHGYTADITR TVALGQVPAELQKIYKIVYEAQKQGIATAVAGKTGADVDKAARDYICEQGYGQYFGHGIG HGIGLEIHELCMPALPFSKEVLKDNMAITVEPGIYLPDFGGVRIEDDILINGNSPETMSK LPKEELLVL >gi|308170106|gb|AEHR01000017.1| GENE 35 32329 - 32628 438 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116629403|ref|YP_814575.1| 50S ribosomal protein L27 [Lactobacillus gasseri ATCC 33323] # 1 99 5 103 103 173 84 4e-42 MMIDNLVQLKLFAHHKGGGSTTNGRNSAGRRLGTKRADGQQVTAGAIIYRQRGTKIHPGK NVGRGGDDTLFALTDGVVKFERLGKDRKQVSVYSAEEAK >gi|308170106|gb|AEHR01000017.1| GENE 36 32645 - 32956 458 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519428|ref|NP_965358.1| 50S ribosomal protein L21 [Lactobacillus johnsonii NCC 533] # 1 103 1 103 103 181 85 2e-44 MYAIIKTGGKQYKVTEGASIFVEKLDVEEGTVVTFDEVILVNDGESTKIGTPVVKGAKVT AKVEKQGKEKKVVTFKYKPKKHSHSKYGHRQPYTKVIIESIEA >gi|308170106|gb|AEHR01000017.1| GENE 37 33123 - 34259 1368 378 aa, chain - ## HITS:1 COG:L0176 KEGG:ns NR:ns ## COG: L0176 COG0294 # Protein_GI_number: 15673137 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Lactococcus lactis # 41 373 13 356 357 187 33.0 4e-47 MEIKEIKYDKINIEGLPLQIIKRDILQRQEIVLAWQGIECVENKIIDFLNHFDIPLFRCE NTIQFLFPITALKILAAKSKILWPDDEKLALSIDAIIKSHCIIWKAGRFTFDITDKPLVY GILNVTPDSFYDGGQYYAPEDMKKHIANMVDSGADIIEVGGQTTKPGGYVEVKPEDEIMR TIPAIKFIHDKYPNIAIAIDTYKLPVMQAAIEAGVDIINDVRAFDSYQKRALMAKSNVGL VTMHSSREHEYDNLSDEMIKFFKDNLKTLIDAGIDLNRIILDQGIGYAKVADGYQDYTMM RNLDQLNKFNRPIMVAISRKGFGKKLFNLNKEDRLPVTLIAESAMFLRGGRVIRAHDIAE TYQLVNMLDIINQSYWFR >gi|308170106|gb|AEHR01000017.1| GENE 38 34259 - 34858 529 199 aa, chain - ## HITS:1 COG:BS_ysnA KEGG:ns NR:ns ## COG: BS_ysnA COG0127 # Protein_GI_number: 16079888 # Func_class: F Nucleotide transport and metabolism # Function: Xanthosine triphosphate pyrophosphatase # Organism: Bacillus subtilis # 9 194 8 194 198 69 30.0 3e-12 MISNEMNFVIASNNIKKAKELENILYHLGYKSIIYSELMPYIQFPNEQNNSLEQNACTKA EFISHYLNNELVIADDTGLYLDAFPQEYGVSTKRQLMKECKNGNFNQYLLNKVKEKDRKM TLRSVVALAQNGVIIAKGAGKMRGKIALEELGNMSTGFDKIVIPDGSTKTMAQMDWHTRF LYLHRAIALQNLLKKRNFS >gi|308170106|gb|AEHR01000017.1| GENE 39 34851 - 36071 1191 406 aa, chain - ## HITS:1 COG:CAC2398 KEGG:ns NR:ns ## COG: CAC2398 COG0285 # Protein_GI_number: 15895664 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Clostridium acetobutylicum # 19 403 32 426 431 189 33.0 9e-48 MLAGDHNHVVFLRNIKKRLGSPEQAFKTIHIAGTNGKGSTGMMIKGVLEHAGYKVGYFNS PALIDDREQISINNILISRNDFVATYYEILNKLSPDESAKISVFEWWTLIMLVYFANKKV DWAVIECGLGGTDDATNIINAPEYAIFTHIALDHIHILGDTVEKIAKAKSGIIKYGTKAT IIAPLQQKAVVNIIKEKCSQAQVPLILSDEIAKIKVHNSKINIISTDFTLESSFSLLGEY QRENLKTVIALVKQLMREKVLISLMPLKQMLETIKIPARCEKIASLPDVLIDGAHNPDAA YNLAQTIISLRHGRRVIMILGFLKDKNYQKMIQIYQEISHDFILTEPDNLQRKLPVAILA QNFKNHVMQAVNVRSALKIARQNAKPDDLIVVTGSFYLVKDLINDD >gi|308170106|gb|AEHR01000017.1| GENE 40 36119 - 36679 726 186 aa, chain - ## HITS:1 COG:L0175_2 KEGG:ns NR:ns ## COG: L0175_2 COG0302 # Protein_GI_number: 15673136 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Lactococcus lactis # 3 182 26 205 209 191 52.0 7e-49 MNQQKIEHAVRELLVAVGEDPDRSGLVETPKRVAKMYQEIFSSLNHRPEDFANYKKFHVD SNPEMVSINHIPIYSMCEHHLLPFFGYADIAYIPNNNMVLGLSKIPRLVEFVSKKPTMQE KITTDIVKQLAKFIDPKGIAVAIKARHLCMEMRGINKYGQYTYTSDYAGLFNEDDRLKQE FLNQRG >gi|308170106|gb|AEHR01000017.1| GENE 41 36660 - 37178 259 172 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 1 149 117 262 278 104 42 6e-32 KMKSKAYLSVGSNIGDRLNNIVQAVNLLRSNKHIYNVTVSSVYETEPVGNVEQQNFYNIG IKIETDLDPFLLLEALHDIEQKLHRKRLVRWGPRTIDLDIIDYENYQIKTDILTLPHKER DNRKFVLEPLLEISKDDPAYHNLLQEKIKCTKDTNWIKVVQQSEVFNESTKN >gi|308170106|gb|AEHR01000017.1| GENE 42 37172 - 37507 238 111 aa, chain - ## HITS:1 COG:DR0169 KEGG:ns NR:ns ## COG: DR0169 COG1539 # Protein_GI_number: 15805206 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Deinococcus radiodurans # 3 110 12 117 118 65 35.0 2e-11 MVYTHNGVFAEEKILGQRLEIDCEISYPIEQKVIHDNLSETISYVDIYELIVKYAQEQSF NLIETLANKLADKILSEDSMIISVQLKVRKYGVPMAGAFDDIEIEVFKKQK >gi|308170106|gb|AEHR01000017.1| GENE 43 37649 - 38794 967 381 aa, chain - ## HITS:1 COG:BS_yrvO KEGG:ns NR:ns ## COG: BS_yrvO COG1104 # Protein_GI_number: 16079805 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Bacillus subtilis # 3 346 2 344 346 344 52.0 2e-94 MKKNIYLDNAATTPVSPSVAARINDEMLDDFGNASSQHYFGRKARAAVEVARKIIADSIN AKANEIVFTSGGTESNNTAIYGTAKLRSHLGKKIITTKVEHPSVLNPMKDLESKGYNIVY LDVDQTGHISLEQLKDELTDDTILVSIMSVNNEVGSIMPIEEIGQLVKGTNALFHVDDVQ GFGNIDIDVQKSNIDLMSTSAHKINGPKFLGFLYEKEGINLPPLLLGGEQELKRRPGTEN VPAISGFGVAVKESNIDKKEQQKKYQNLQNIIINKLKHDHVDFEVNGSISGSVSHHVLNL WLKGIDTALAITNLDLAGFSVSGGSACTAGSLHPSHVLAAMYGESSPRLRESIRVSFSRF TSEDDVTSFAAELADMCKRLV >gi|308170106|gb|AEHR01000017.1| GENE 44 38816 - 39481 703 221 aa, chain - ## HITS:1 COG:SA1427 KEGG:ns NR:ns ## COG: SA1427 COG0775 # Protein_GI_number: 15927179 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Staphylococcus aureus N315 # 13 215 21 221 228 125 39.0 6e-29 MAEEAEYYHTNFQFNEIKKYGITEYSHGFIGNNEVFIGLSGIGKVNAAMNITSLLVNEKI DLIFITGSAGALQTNIHQYDLVCPDAFRYFDAHNTMAGDYVEGQIPQEPAEYDLNSMLRD DFIKYLQAKKIRYFSGLAVTGDSFIATFETKNGILKNFPDALCVEMEGAAFAQVASKFGV PLVALRAISDNAANEAAVDFDIFVKNVAKKAASIICDYLKN >gi|308170106|gb|AEHR01000017.1| GENE 45 39517 - 39768 294 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501540|ref|ZP_05744442.1| ## NR: gi|259501540|ref|ZP_05744442.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_05724 [Lactobacillus iners AB-1] hypothetical protein HMPREF9214_0235 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0349 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0800 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0217 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0388 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9216_0337 [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0312 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0176 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0127 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9214_0235 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0349 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0800 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0217 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0337 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9219_0388 [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0312 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0176 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0127 [Lactobacillus iners SPIN 1401G] # 1 65 1 65 83 92 100.0 9e-18 MTEKRSEYIKEKRKKALFGFFKKKGRHAADNSDLKDNISNDEVIDRPKLTKEEKSKRLKR FLNRAIIIELILLALVLLYLLKF >gi|308170106|gb|AEHR01000017.1| GENE 46 39761 - 40324 772 187 aa, chain - ## HITS:1 COG:SP0989 KEGG:ns NR:ns ## COG: SP0989 COG0494 # Protein_GI_number: 15900864 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 176 1 177 181 138 42.0 5e-33 MDIREEEISRKRIFSGKLIDLDVETISLPNGKTALREIVNHPDASATIAINNQNKMLLVR QWREAIKQETLEIPAGLIDDTDASPLDAMKRELNEEGGYRAEYWEKISEFYSSCGFCNEK LYLFYCDTLTKVENKRPLDDDEFLTQVWYSLDELKQLLAQGKIVDSKTVMAINLWENMVL TGNRKND >gi|308170106|gb|AEHR01000017.1| GENE 47 40330 - 40548 352 72 aa, chain - ## HITS:1 COG:no KEGG:LJ0980b NR:ns ## KEGG: LJ0980b # Name: not_defined # Def: cold shock protein # Organism: L.johnsonii # Pathway: not_defined # 1 69 1 69 69 107 81.0 2e-22 MRTGIVKQFDSRSPYGFIEDDLTGASYFVFYKSIKESGYKRLEVGQRVRYQLAQGKKGLQ CINVYVENNERG >gi|308170106|gb|AEHR01000017.1| GENE 48 40548 - 43409 3503 953 aa, chain - ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 26 953 1 932 932 1176 59.0 0 MFKLGGTTKNFVLFWAKFFCLERKNMKIKDTLNLGNTKFKMRGNLPVREAEWQKQWEDNN LYEQRLKLNEGHPRFDMHDGPPFANGNIHMGHALNKISKDIIVRYKNMRGFYAPFVPGWD THGLPIEQQLAKKGVKRKELNMAEYRQMCHDYALSQIEKQRQDFKRLGVMADWNHPYITF QPQFEAQEIRVFGEMYNKGYIYKGKKPVYWSWSSESTLAEAEVEYKDVEANSIFVAFKLI DGKDLLDTDNTYLIIWTTTPWTIPANEAICVNPKFDYSLVQVNDKKFVVATGLLEKVAQE IGWDEYHVVKSFKGSEMEYMKAKHPIYDKESLVIEGFHVTLDDGTGLVHTAPGFGADDFN VGLKYNLPIFSPVDGQGNYTDEVPELAGMFYQDVDKLMLEKLKACGALLKLKVFTHSYPH DWRTKKPVIFRATTQWFASIEPFRQQILDEIDKVNFLPDWGKIRLYNMIKDRGDWVISRQ RAWGVPLPIFYAEDGTPIVTPETIEHIAKIFEKEGSMAWFTKTAKELLPDGFTSSHSPNG EFTKEKDILDVWFDSGSSHTAVMAQRPELSYPADLYLEGSDQYRGWFNSSLITSVAISGK APYRQILSQGFVLDDKGHKMSKSLGNVIAPNDVIKQMGAEIIRLWVAGADTTSDVAVSQD ILKQAAESYRKVRNTMRFMLANTSDFDPKKNTVPYDEMSGVDQYMEVKLNKLLAECLDAY DHYDFTSVYKNVFSFLSNDLSSFYLDFAKDVLYIESEDGQARRSMQTVIYDFLVKLAKLL TPILPHTMEEIWSYLKEPEKFVQLTNMPEVQHFANENVILSNWKRFMTLRSDVLKALEDA RNKKVIGKSFEAHVILYPKADTAELLESLNADVRQILIVSDLTIENETKMPQNVEEFATA GIVVEHAQGDVCPRCRRTTNDFCKNGSLSNLCSRCADIVLKNYPQVSEEGLEE >gi|308170106|gb|AEHR01000017.1| GENE 49 43550 - 44377 915 275 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1197 NR:ns ## KEGG: LGAS_1197 # Name: not_defined # Def: cell division initiation protein # Organism: L.gasseri # Pathway: not_defined # 3 274 1 263 263 151 42.0 3e-35 MAMTITPMEIHDKVFPIVKNGYSAEAVDEFLDQIIDDYADVLDRNVDLKNENYKLKKQIR DASSDNTQIRQHMVEVQEQARQIVNQARVTAQQIIDDAKDKSDSMLADTQKQLVQQQNML EQYNTLMNDYELLKTEVANFIHDTKAKLNEQVKELDDKDWQIYLDKHYGRTRLYPADGSQ PIKTDDSDNLIDEEGLIKPEDIDKYQEYIPAENFDEDIDNNTDTEVNSDNEKEDTHKILE GDNPTVVETVEDENSNSDSLSRPKIIFPDDYKDHN >gi|308170106|gb|AEHR01000017.1| GENE 50 44483 - 45724 1394 413 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 1 410 64 473 474 328 42.0 1e-89 MELPENAQRVPAVPNVDYKKLGYYDESGINECNVAMSCTESTYGNERTLAFDPLVVDGLD EDCMQTVVLPYIKSARNGVEYLGELITKYGSAAGNSVLFGDKDEVWYMEIVTGHHWVAQR IPDDCYAIAANRVSIENVDFTNADYFMWSDGIREFVDAHHLNPDHHGWNFRHIFGTYTEQ DRHYNTSRVWYGQKYFNPDIEQDPQDGDLPFIRKANKLITQEDIEFVLGSHYQNTPYDPF GHGTDEEKHMYRPIGLNRTQNAHILQIRNDVDADKAGIMWLCIGGPTFTPFIPFFANMSD TDASFNNTSLTYNQNDAWWYYKSLASLVESHYPQFVQLNIKYLEELNRYYRGRIEEIIAN SEGLAGNKLTEYLTSENQKTVKHTKKLSDELFGKMFIESIKMSKLTFSMDKNL >gi|308170106|gb|AEHR01000017.1| GENE 51 45736 - 45906 262 56 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 46 6 50 474 62 55.0 2e-10 MKKLSACTTILVGKKATIDGSTMIARNDDTYSPITPQKFIIQKAEKIIKDALLNLI >gi|308170106|gb|AEHR01000017.1| GENE 52 45933 - 46946 839 337 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 1 337 1 324 336 327 50 1e-88 MGLFNKLKEKLLGKTEENKDSEITKKDNDIQATYDRGLKKTSNSLGEKLNSFLAQFRTID EDFFDDLEDLLIEADVGYETAEMLTDELRNEAKLKNVKDSKLLKNVIVEKLVELYEQNNT KDSKLILKTGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQL KAWGQRVDVQVISGNTNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKI NRTIHRKIPDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAI RNEMSLPVKLVGLGEKAEDLAEFDAEKFAIGLFHELI >gi|308170106|gb|AEHR01000017.1| GENE 53 46954 - 47889 1008 311 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 14 307 897 1180 1186 243 48.0 3e-64 MKKSSQEKLTADLTELNTQLGKIDAELNQLESRASRDYELRKNLADNHKKLSIDITKLSD SIRHKLDILSQDYDISYEAALDMVEGEHNLQKQQDLAKDVKLHKMSIAEIGPVNLNAIDE YQEVKTRYDFLSEQQNDLLSARKNIEVSMSKLDNEVKKRFEDTFLKIAQKFKTIFPIMFG GGHAQLMMVDPKNILETGIEIVAQPPGKKLQSLSLLSGGERALTAITLLFAMLEVSPVPF CILDEVEAALDEANVVRFADFLNKYELQTQFIVITHRRGTMKKVNNLYGVVMQESGVSQV LSVSLTDDQNR >gi|308170106|gb|AEHR01000017.1| GENE 54 47904 - 48143 233 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805472|ref|ZP_07699517.1| ## NR: gi|309805472|ref|ZP_07699517.1| SMC protein Flexible Hinge domain protein [Lactobacillus iners LactinV 09V1-c] SMC protein Flexible Hinge domain protein [Lactobacillus iners LactinV 09V1-c] # 1 79 413 491 491 112 100.0 9e-24 MESLKREITQFDNDRQHLQAELADNSSKLAVANNKCANLQEQIKQNQEQALLVEKQLQSL AIKMHDLDAKKIIRKMKKL >gi|308170106|gb|AEHR01000017.1| GENE 55 48278 - 50509 1857 743 aa, chain - ## HITS:1 COG:BS_smc KEGG:ns NR:ns ## COG: BS_smc COG1196 # Protein_GI_number: 16078657 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Bacillus subtilis # 1 706 1 714 1186 361 36.0 3e-99 MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN MRDIIFAGSEFRGPLNKAEVCLIFDNHDRQLHLDSDKVAIMRRILRSGDSEYFINNQSVR LKDIRTLFVDSGLSQNSLAIISQGKVDQILNSQAEDRRYIFEEAAGVLHFKQQKLVALKK LDETNNNLIRINDLVKELKARVEPLSEESSLAKQYKFEKKQLDRKLKQLLALEIESLVLE KKEIGSKLSDSKTNLDRIDEEVSRSQKDLEAKKKKSKLLHEQKDDHQSALLHITQEIAQL STELQIQKQSFEYDAATAKEFEQQHQELIVRKNKLQQILISQQNDLAQVTNNAQQLADFK KKLGSKLNTTPNELNRNLELVRSDYIQTLQDQTTNNNQQVFLKNEIQRLTRAEDSQVVSL SEQVQQSSVKLHQLLQDKKNLMQQHEELAAKNNQKTKEYNLISQHGQKLQEQINHLQNIL SQKQAQIDGLKKLQQRHDGYYTGVKFILNNMSKFAGAIGVVGDLLNFSPKLEAALITSLG SGVQSVVTIDKNSAKDAVELLKKYRAGRVTFLPLGGLRKNKIPDSTLRVIKSMDKVLGVA EELVTPTIDKDISEVINYLLGNVIIVEDMQTALQVQSKTGGYYRIVTLDGDIISPGGSIT GGIRNQRTNSPLQINLQIAELEDKVVVDLQKMKSLKQELSQFNDKIHQFDITIQEYQRQL LTLESEFNKSNLDYQGQKRKMID >gi|308170106|gb|AEHR01000017.1| GENE 56 50532 - 51209 1029 225 aa, chain - ## HITS:1 COG:SP1248 KEGG:ns NR:ns ## COG: SP1248 COG0571 # Protein_GI_number: 15901109 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Streptococcus pneumoniae TIGR4 # 10 223 8 225 232 193 49.0 2e-49 MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK VIDSDEAKPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKNI >gi|308170106|gb|AEHR01000017.1| GENE 57 51344 - 53095 1953 583 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 564 1 576 600 374 39.0 1e-103 MKKFRLLSSLALLSGVALTMTACGGKSDNANVSTKAFKSAVPKKEVKKGGTLRQALTTNT PFTGVFLNELADTQDDSDVMSPANESLFYFDDSYGYNDEGPATIKMDVKKKTVTVKIKKG VKWSDGKQVCAKDYEYAYEIIANKDTQTSRYTESLQALKGLTEYHDGKAKTISGIEMPDG EKGLTVVLHYKEMKPGMRQSGNGFIWECAVPYHYLKDVPFKKLKESDKVRKNPLFFGPYK FSKIVRGQSATFVRNPYYWRGKPNFDKVVIQVLNPNNSSQALKSHKFDIIGVRNSQWKEV KNTKGVNFVGKVGLGYSYVGFKVGKWSAKKGKNIMNPKAKMNNKALRQAIAYGMNIAPVY KRYTNGLTFQIPTLIPKQFGAFYNGSVKPYTQDFKKANKLLDDAGYKKKGKWRVQPNGKP LVIHFAAMSGSAIQEPIIQNYLKQWHKLGLNVKLAGGRLMEMNSFYDKVMHDDPSVDMFM AAWGLSSEPSPNDLYNEKAPYNFTRFVTKKNSELLKAIDSTKAFNKKYRIAKFHEWQKYM ADELYVLPVANNWSITAVNSKISGYDASPSASCKFWMNCGFIK >gi|308170106|gb|AEHR01000017.1| GENE 58 53550 - 54479 1267 309 aa, chain - ## HITS:1 COG:L90358 KEGG:ns NR:ns ## COG: L90358 COG1173 # Protein_GI_number: 15673820 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Lactococcus lactis # 24 306 11 291 294 251 45.0 2e-66 MFSKKKKADVQATANNSTPDLPPSAIKVVAREIVKDKISLLAFLVIALIFATTFIGSFAF SILHVDVTDTNIADAFYSWGQMGHILGTDDGGRDILNLLIVGGRNSIMIGLSVTFITEVI GLVVGVISGYYGGFIDAIIMRIIDFIQILPQLPIIIVLVSVIPNYNSVILVALISLFGWT GTTRYYRSFVLSQSGREYVLASKTSGSSDWQIMFREVLPNISSMIIIDVVLGVAGNIGIE TALSFIGYGLPNSTPSLGTLIGFAQDPVNVTTRLWLWMPATVVLLALSLSFNYVGRALQR AGDARQREN >gi|308170106|gb|AEHR01000017.1| GENE 59 54494 - 55456 1022 320 aa, chain - ## HITS:1 COG:BH3638 KEGG:ns NR:ns ## COG: BH3638 COG0601 # Protein_GI_number: 15616200 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 320 1 322 322 342 52.0 5e-94 MWKTVLRRILIMIPQLIVLSLLVFVLAKMMPGDPFSGQINPNQDPKTIAHLKQELGLNDA PWIQYCRWLGNVMHGDFGTSYIQHVAVTSLIWDRAVNTFWLSIVTVILSYSISIPLGIIA GHHQDEWQDQSIQIFNYITFAIPGFVSLILGLWLFGFTLGWFPIAGSVGTDCDSSVFAYI WSRFYHLILPAMLCAILSTTGTVQYLRTGIVDNKVEDYVRTARSKGVPEKVVFNKHILRN SLLPIAAFMGNTITGLLAGSVILETIFSYPGMGKLFLDSISQRDYTTLTALILLFGVLTL VGNLLSDIIMSIVDPRIRIK >gi|308170106|gb|AEHR01000017.1| GENE 60 55458 - 56426 753 322 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 2 269 8 275 329 294 52 1e-78 MAEEIIQIKDLKVHYPIRSGFWNRITDYVRAVDGVSLSIKEGETYGLIGESGSGKSTIGK VIVGVEAATEGQILYKGKDITKSRNRKKLNYNKDVQMIFQDSMSSLNPRKRIEDIIAEPI RNFENLTTDEERKRVQELLDIVGMPSDAIYKFPHEFSGGQRQRIGVARAVATKPRLIVAD EPTSALDLSVQAQVLNFMKQIQQQYNIAYLFISHDLGVVKHMSEDIAIMHRGRFVEIGKS TDIYNNPQHIYTKRLLSAIPIVDVNRREEHKRMRQRVEKEFQDNRDKWYDKDGRVYPLQQ ISDRHFVALPKDAINSELEGEK >gi|308170106|gb|AEHR01000017.1| GENE 61 56436 - 57440 586 334 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 8 325 11 328 329 230 41 3e-59 MEKQRDVLLDIEHLHTAYRLQGKFYDAADDINLTLKRNEILAIVGESGCGKSTIASSIIG LYDHKNTRVTGDIMYNELNLSDLNESLFNKIRGNNIGMIFQDPLASLNPLMRVGDQVAET LYYHTKLNEKARYARVIELFTQVGMPEPEKMYRMYPHELSGGLRQRVVIAIAIACKPEII IADEPTTALDVTIQAQILDLLKDIQKEMQAGIILITHDLGVVAETADQVAVMYAGQVVEK ADVKTIFEHPLHPYTRSLLNSMPQADDEKEQLHVIQGTVPSLKNMPREGDRFASRIPWIP ASEHEENPVIHEVEPGHFVRCTCWKNFHFQDQSK >gi|308170106|gb|AEHR01000017.1| GENE 62 57588 - 57830 368 80 aa, chain - ## HITS:1 COG:lin1920 KEGG:ns NR:ns ## COG: lin1920 COG0236 # Protein_GI_number: 16800986 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 75 3 73 77 64 54.0 4e-11 MSEEEIFNKIANIIEDRFEINRSNITLNLNFKNDLDADSIDFVEFVMDLEEAFGADISDE DAEKLKTVGEAVKYIYQRQN >gi|308170106|gb|AEHR01000017.1| GENE 63 57880 - 58881 1288 333 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 1 329 1 327 330 309 50.0 6e-84 MKKIAIDAMGGEHAPQAIVEAVLSLVKQLPQTKFILFGDKNKIENCLIGVKCERIEIVNT TEVIDDSDEPVKAIKQKGDSSMVVAAKYVKDGRADALFSMGNTGALLACGIFIIGRIKGV KRPALMPTLPSSSNKLGFNMIDVGANAQSKPEYLIQWAKMAELYAEKIRKIAHPRIALLN NGTEFDKGDALHQEVYKKLLKEDLNFVGNIEGNELFSDKADIVVTDGFCGNIALKTLEGT SQVIVHEMKQSLLNNGIIVKLGALLAKHGLQSLKSHFDVARYGGAVLIGLNAPVVKTHGR SDKRPVYYTLLQIDKMLDEHLIDEFKKYFLNNN >gi|308170106|gb|AEHR01000017.1| GENE 64 58902 - 60263 1184 453 aa, chain - ## HITS:1 COG:BH2495 KEGG:ns NR:ns ## COG: BH2495 COG1200 # Protein_GI_number: 15615058 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Bacillus halodurans # 1 432 212 644 673 429 47.0 1e-120 MQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKRMNR LLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLT SSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLN KGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMN EQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMD AFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFV SDPKTDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIF TTAQKESKILVHQNPELVGEEYDFLKLLMEYDD >gi|308170106|gb|AEHR01000017.1| GENE 65 60232 - 60924 509 230 aa, chain - ## HITS:1 COG:L0262 KEGG:ns NR:ns ## COG: L0262 COG1200 # Protein_GI_number: 15674226 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Lactococcus lactis # 9 223 3 219 666 156 39.0 3e-38 MGIVNLKVLLNPVSDLDGVGVKTAEALLQLKIKTIYDLLFYFPRRYDSLETFPLNELKDG QKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHDIIMVNFFNQPWLKKQLQKGNDIAIYG KYVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFINQAIEKYLPQLPEVIPQYLR DKYKLLDVQSMIIQMHQPKDLQQVKVAQRTAIFFGVFCFSIAIITIVVCK >gi|308170106|gb|AEHR01000017.1| GENE 66 60926 - 62551 1904 541 aa, chain - ## HITS:1 COG:SPy1885 KEGG:ns NR:ns ## COG: SPy1885 COG1461 # Protein_GI_number: 15675702 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pyogenes M1 GAS # 1 541 12 554 554 545 55.0 1e-155 MVRVATHRMGKNAEFVNKLNVFPVPDGDTGTNMNLTMESGARAVNENNSSCVGDLTKSLA KGMLMGARGNSGVITSQLFRGFYKATENKKVLTAQDLSQAFSNGVATAYKAVMKPVEGTI LTVARVAAEKGASKASETNDVIAVMKAIVSGAKEALKTTPDLLPVLKQVGVVDSGGQGLV FIYQGFLEGLMGKKVNDAFQLGENEMDELINVTHHQAESAQVQLSTGDIKNGYCTEIMVD LTASIADKKKFDLAEFRAYLSELGDSLLAVSDGDIAKVHIHTEYPAKIFAYGKQFGKLGK IKIDNMRIQHETIVENSKEQEESVDFAVIAVASGHGIRDIFKSEGVNRIISGGQTMNPST QDIIDAINKSGASKAIILPNNGNIIMAAKQAAEVANIPVGIVPTKTISQGLTAMLAFDPE VSVEENVTAMSSELDTVVSGEVTKAIRDTTIDDIEVREGDYLGIIDGKIKIDDPDIISAS LRMIENMLDDDSEIVTLMYGSDANATQAEKIADKLRASHEDLEIEIHDGGQPVYYFLVSV E >gi|308170106|gb|AEHR01000017.1| GENE 67 62614 - 62973 506 119 aa, chain - ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 118 1 118 121 119 55.0 2e-27 MAVKIKTKYGLVDISSNVISTVVGGAATTNYGVVGMASKNALRDGAFAILNKENYRKGVV VKIDDNQIVVDVYIIVGYGLKISEVSRNVQDSVKYNLENLLGIKAKTVNVVVQGVKVLD >gi|308170106|gb|AEHR01000017.1| GENE 68 63149 - 63334 282 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519405|ref|NP_965335.1| 50S ribosomal protein L28 [Lactobacillus johnsonii NCC 533] # 1 61 1 61 61 113 91 5e-24 MAKDIITGCKTTFGNKRSKALNAVRRSWKPNLQKVRILVDGKPKRVWVSARTLKSGKVTR V >gi|308170106|gb|AEHR01000017.1| GENE 69 63516 - 64175 711 219 aa, chain - ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 4 213 3 214 218 191 51.0 1e-48 METFIHAYSWINLRFLLQGLMVTVYISIVSIILSFILGLFLGIVRYLKIKVISHIVGFIV DILRNLPLLLIIFFAYFGLPQLGIVTNVTCAAIIALVVFEGAMLAEIVRSGIGAVNKGQL EGALSNGMTYAQAMYHVVVPQALHFMIPAILSQFVSLIKDTSLATIIVLPELLYHAQIIY SQNTTYLLPMYVIVALMYFIICFTLSLIADHLQKQYSAK >gi|308170106|gb|AEHR01000017.1| GENE 70 64185 - 64823 511 212 aa, chain - ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 2 211 3 212 216 193 50.0 2e-49 MINILVNHWPQFMQGLSSTIMCSLIAIFFSLIIGVICALVEVSPCRIPHLIARIYVEIFR NIPLLIIVMIFYLVVPQMGLKLTGFGAGTIALTLYTSAFISETVKSGINSIGIGQMEGAR SNGMSYVQAMRYVVLPQALKVVIPPLGNQFISLIKNSSVLAFVAGFDLMYQADVISLASF ETVNTYIVVGLLYLVLTLPLSYYMRYLEEKLA >gi|308170106|gb|AEHR01000017.1| GENE 71 64820 - 65641 1081 273 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 1 264 1 272 273 226 46.0 5e-59 MKKIHKILLAPFILFLLLFLGGCGQAKKVNVYQKVKQSRTMIWGTRADTRLFGYMDIKSS KIIGFEIDMAKAVTKQMLGKDAVAKFVQTTPKTRIPLLKNRNINAIWATMTITPERKKQV DFARPYIGAGASLLVPNNSKIKDVHQLNNKKVLAVKGTTAVADIKKVAPKAKVLEYDDYG QAFSALKAGQGVALTTDNCLLAGIASENPGFHLIGKNYTNQPYGIAVDKGQAELRDHINK ALLALKKNGTYHRLLVKWFDGIPGFNIKEAEVL >gi|308170106|gb|AEHR01000017.1| GENE 72 65650 - 66390 290 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 233 1 230 311 116 31 6e-25 MSSIIEFKHVNKYFGKLHALKDINLTIDEGQVVSIIGPSGSGKSTLIRTMNGLETIDSGQ LIVDGYDVTDKHTDINKIRRDVGMVFQHFNLYENHTVLENITLAPKIVLKRPDAENEKIA MDLLRKVGLEDKAQQYPRNLSGGQKQRVAIARSLAMRPKAILFDEPTSALDPEMIQDVLD VMKYVAEQGITMVVITHEMGFAREVANRLIFFENGQVLEDTDPEKFFNHPETERARQFLS KVISTK >gi|308170106|gb|AEHR01000017.1| GENE 73 66563 - 67651 1017 362 aa, chain - ## HITS:1 COG:lin1180 KEGG:ns NR:ns ## COG: lin1180 COG1363 # Protein_GI_number: 16800249 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Listeria innocua # 4 359 2 358 359 187 34.0 4e-47 MKKEQEIKMLKEFSNANSTSGFEEEFVKLFATYAQDIANVEIDGMYNLYASKKENQGNRP VIQIDAHSDAVGFITQAVRPNGLIKFVPLGGWVKYNIPSLKVRIRNKEGEYISGVVATKP PHFMTAAERNTTPDIASMSIDVGSCSREETINDYKIDTGCPIFVDVECAYNPKTGLFFGK DFDDRFGAGAMISILDNLKNEKLNFDLVCALSAQEEVGLRGAYVTARKVKPDVCLVLESC PADDTFEPEWLSQTGLKRGPMLRDMDTSFLPNPRFQQYACQLADQLNIPYTRSVRTGGGQ DGAAIYYENGAPTIVIGIPVRYEHSPYCFSAYTDFKASVDLATALVRDLTVEKLNSFKLQ SL >gi|308170106|gb|AEHR01000017.1| GENE 74 67818 - 69017 872 399 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 8 393 4 390 402 353 47.0 3e-97 MNKQEIIFKQNLFVLAIAVFIAGIGFSEALPFLPLYIKTLGTFTHKELNFWVGFTFSTTY FVSALVSPWWGKLADQKGRKLMILRSSIGMAIAIGSMGFVTNVYQLFCLRMLQGFFAGFV SNANALIATESPKNQAGKAMGTMAASFTAGNLLGPLLGGLLASMFTYHFTFLLTGILLFI SFILSFLFVKEEFKPISKQSVITNKQVINSLKSPNLIFGLLLTTIIIQTANSSINPIVAL YVANLMHNQGNTIFVAGIIAALPGVATFLAAPRFGELGDKIGTHKIIIGGLISAIIFFFT TAFVTNAVQLGVLRFLIGFSDACLFSQVQTMLAKNSSIQTTGRIFSWNQSAMYIGNIFGP LVGSTVAGFFNYNVLFIVTAALVGINLLLFHINVVKNIN >gi|308170106|gb|AEHR01000017.1| GENE 75 69215 - 70528 1056 437 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 13 431 5 432 447 411 49 1e-114 MNKENFHNDDAILDVYEKPNLSQGVLLSLQHLFAMFGSTVLVPILVGLDPSIALLASGVG TLVHMILTHFKIPAYLGSSFAFIATMQALMKADGYPAIAQGAIAAGLVYLVVAYVVSKIG SAWVDKVLPPIVVGPVIIVIGLSLATTAANDAMLHNQKYNLIYFLVAIFTLVVTLCFQMF FKGFTSLVSILLGIICGYILSCCLGIVNFSGVAKAAWFTFPALDVPIISYKLKLYPAAIL TMAPISFVTMSEHMGHIMVLNSLTKRDFFKNPGLHRTLLGDGLSTITAGFIGGPPTTSYG ENIGVLAMTKVHSVWVLAGAAVFAIIFSFIGKIAALIESIPMPVIGGISFLLFGTIASNG LKILVDDKVDFSEKRNLLIASVIMVVGIGGAYLQLGNFQLTSVALSTILGMILNGILPKH AAIEQQQLAEKEGTKII >gi|308170106|gb|AEHR01000017.1| GENE 76 70581 - 71381 902 266 aa, chain - ## HITS:1 COG:SP1063 KEGG:ns NR:ns ## COG: SP1063 COG0842 # Protein_GI_number: 15900933 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 226 1 226 266 190 47.0 3e-48 MKPTDFRKKSNLGLYGLGLLIKYETKAFFENKGSVLSLLLTPILFFVFISTGISRMTGNV IYAGMKVSYLEYSYLGIMIYLVLGQMSQTIYRTTIDKKYGLLALKLLSGIKPFYYVIGMS TYAMLGLSVQMFALIILANFFGIHYSLMKIGVMIVIIILTLLFWSALAVAITLRISNYQV RDNILSFVITPLSFTAPVFYVLDYAPLWMKWLAKINPVTYQLGALRQGVMLNQYFQSIII LLVFALAATALSSNLVAKSKLNLTEY >gi|308170106|gb|AEHR01000017.1| GENE 77 71368 - 72297 305 309 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 3 303 9 308 309 122 26 1e-26 MKISVNNLAIKYQDHYGIKNISCELTAGKFVALVGHNGSGKTTLCNALVGLLEPSEGDIN IQDLSTDKQNFSTIGFAPQSQVVDWYSNVEANIMLGAQLAHLKPNEAKNQLDLILRLLDL SDLRDRSLTDLSGGQLQRVQIARAIVHNPLIYILDEPTVGLDAQNTDNLMKYLVKEAQSG KLVIVSSHDLFLLQEYAEDLLLLDEGKLIYHGSINDLLKDRGNSRKFIITLDNEYSVADD FMIKNDDVIRVEHESDNTWQLEVKPEVTISDLMLMFKKEIKVTSCVEHEKTLKEVYLSMS KRSGNYETN >gi|308170106|gb|AEHR01000017.1| GENE 78 72538 - 73674 1274 378 aa, chain - ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 372 105 477 486 167 28.0 5e-41 MGIGAGGMGSLPYIIVGYIYPNIKQRTKALGILTSGFNAAAIVGPLIGGWIIDISSWHWI FYINIPIGLLAMLLTAIFYKKESISQFSKFDTVGSALLVTGLITFLLGIQLLGLVSVWLV ICCLIISLLIMTYFFIHENKEENPVLPLSLFTNKNLIGDFLLFALTWGAFIAVNVYLPMW AQAFLGMTALIGGMTLIPNSCFSIVASQFVYVLQGRTKTYYIILVGIIGMLISSFSLLIA DLSIPLWILIFTSAFSGMGVGFIFVELQVKVQVDAGREHMADATSTSYLIRILAQTVMAA IYGVIMNLSLNQGIKAHPQITLSMLNKMSDCRTASELPAKLLPLMRAISHSGIRVIMLVS CLLLVISLIINYKFNPRH >gi|308170106|gb|AEHR01000017.1| GENE 79 73737 - 73985 202 82 aa, chain - ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 77 1 77 486 67 44.0 5e-12 MTKNQLKFLTIALILGNIMSGLDSTIINTAIPSIVANLHGIQFMGWIIAIFLLGMSISIP LWTKVAERIGNKNAFLVTLSFL >gi|308170106|gb|AEHR01000017.1| GENE 80 74095 - 74856 173 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 26 229 147 340 398 71 29 2e-11 MNKPIFELKNVTVLGNKNSSNVTKILNNLSLTINDGDFITVIGTNGAGKSTLLNVISGAL AIDDGIILHNGRDITNLSEEEHTKFLSRVFQDPQLGTAPRMTVAENMLLALKRGERRFLV PRKLKQNRERFLKLAKMMHNGLEDRMDTFTGNLSGGQRQALSFLMAILKKPDILLLDEHT AALDPHTSQSLLNATREIISQDKITALMITHHLEDALNYGNRLLVLKQGKIIADLDHNAK IKLTTDDLYRYFE >gi|308170106|gb|AEHR01000017.1| GENE 81 74849 - 75748 969 299 aa, chain - ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 3 299 1 288 288 244 50.0 2e-64 MNLMVSAIGQGLLWGLLGLGLYISFRILNITDMTVEGTFPLGAVISVTLISHGFNPLLAT LIAFLGGMFAGLITGLLYTKGKIPPILAGILVMTAIYSINLRIMGRSNISLLGCKTLFSN KFLLRLPKYFDNVFLGLTVMVVITTIVILFLQTDYGQAFIATGDNPKMAKSLGIKTDNTI IAGLMGSNGLVAVCGALIAQSNGYADINMGLGTIVIALASIIIGEVAFGELTLNQRLVAV TLGSILYRLIILCVLQLGFSTNDLNLLSSIVLAICMMIPRFDKLFKIKKTILRSVKSSE >gi|308170106|gb|AEHR01000017.1| GENE 82 75748 - 76743 1201 331 aa, chain - ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 2 331 14 344 344 213 36.0 5e-55 MKRLYTLIAILLIILSVAFVNQKTQSKPKHNMPVVGVLTLLHHPALDQIYDGFVKEMAKQ GYYKDKNYKLEYQNAQGDQSNLEIMSKKLVNMSPDILVGITTPASQSLAHATSSIPIVLG AVTNPKKAGLVANNDHPNTNISGVSDQAPVEEQLKLVKKLMPKNAKVGIIYTSNDSSAVT EHDLFVKMAKKYHVNLKSYSIANSNDLNQVSQKMLNEVDAVIVPTDNTIAGAMQTLVKNA DAVRKPIFPAVDTMVKQGGLATYGINQNYLGVLIARLVVDILKGKKKIATTPIQYVRHGI PILNLKKANQLGIKIPVDFLKESIKEGEVFE >gi|308170106|gb|AEHR01000017.1| GENE 83 77137 - 78354 1085 405 aa, chain + ## HITS:1 COG:no KEGG:SAG1837 NR:ns ## KEGG: SAG1837 # Name: not_defined # Def: prophage LambdaSa2, lysin, putative # Organism: S.agalactiae # Pathway: not_defined # 259 371 3 112 468 91 44.0 7e-17 MKKRKFVRNLSKGLILSVATLCGESLLNVQQSKADTRTSMNGSTLRIVYNGRGKVNLLNS KFKYQNQYVANGTNWKVWEKLVSNQGTLYRIGNENQWVPEQYTDKKSTTQAPKKPTTNTN NNVQAKTILPTANVVKIKAATGVNVYTAPVNGRYVKHLNPNTSWKYFKIEHGNDGYTWFN LGGAQWISSKLTDQPQLVKNISHITQAPKTVKKAKTISQAKATYNPVQNLANIYIPKHVY IPKHNNMSIYDMGLNNGPVNIDSAISFMRQLKNNGVQYSMFGKRDGSDGTADCSGAVYAA LRAGGASSLGYIPNTDSMHNWLLKNNFTEVAHSTRIPNQKGDVVIFGTKGLSGGAAGHVV LYTSPYTIIHCTDRDDSHSGVLEEPASNIEGCYTSMGGFYVYRQI >gi|308170106|gb|AEHR01000017.1| GENE 84 78393 - 80012 1566 539 aa, chain - ## HITS:1 COG:SP0342 KEGG:ns NR:ns ## COG: SP0342 COG0366 # Protein_GI_number: 15900272 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 4 538 5 534 535 667 61.0 0 MTPWWKKAVIYQIYPKSFQDSNGDGIGDLPGIITRLDYLSKLGIDAIWLSPVYQSPGIDN GYDISDYQAIDPQYGTMDDMDNLILEAKKRNIKIIMDLVVNHTSDQHAWFVEARKNKENQ YRDYYIWRDPVDGHEPNGLQSAFSGSAWQYDKTTKQYYLHFFAKQQPDLNWSNSIVRDKI YQMMNYWIDKGIGGFRMDVIELIGKDPDKMVRENGKMLHPYLQEMNQKTFGQSDLLTVGE TWNATPKIAEDYSDPARHELSMVFQFENQTLDQKDGCSKWDLKPIDLVELKKILVKWQTE LDFKHAWNSLFWENHDIPRVISRWGNDQKYRVVCAKMFAIVLHLMHGTPYIFNGEEIGMT NSPVKNINEVEDIESINMYNERLDAGYDKDELLHAINVKGRDNARTPMQWSDALNAGFTS GKPWLRVNSNYTDINVKQCLADPDSIFYTYQKLIELRHHNQIVVDGDFQLIEETDAQILA YYRILGDQKWLVVANLTDKEKPFNCHEQYQKVLVENYTTPSNLQNIILKPYQAFVVTIA >gi|308170106|gb|AEHR01000017.1| GENE 85 80070 - 81446 209 458 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 261 453 4 210 245 85 25 1e-15 MLMIRNAYLSYPDRKIVLKNLNLTIKTGECVVLTGISGSGKSSILNLINGLATRYDNCKI GGEVLFQHHDIVKLELYQIAQLIASVFQNPKTSFFNVNTTMELLFFLENNGVSRQEMQKR LSDLLNLFPIANLLNRNIFELSGGERQILSIATAYISGVQCVLLDEPSANLDSKYIKIVA KMLAILKKRGVTLLVAEHRLYYLMDVADRVLVVANGTISQEYSISKFKQLSEKQLYAMGL RTRQEVQLKSFSPMTSGEFYIKSLYKKLIHHQVLKIRDLSLKKGNIYGIVGLNGSGKTSL IKALLGVDKKCQVAIYLDDKLLSTRQRIKLSSWVMQDVNNQLFTDSVMAEIKLGTGNISV DKINQVIKKLKLSSLLDRHPLSLSVGQKQRVAIASTILSQKTLLYFDEPTSGMDYLNMIA ISKLLRDSSTNNNIIIIVSHDVEFLNQTVDHVIKLSSN >gi|308170106|gb|AEHR01000017.1| GENE 86 81440 - 82129 476 229 aa, chain - ## HITS:1 COG:SP1437 KEGG:ns NR:ns ## COG: SP1437 COG0619 # Protein_GI_number: 15901289 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pneumoniae TIGR4 # 84 225 1 142 147 140 46.0 2e-33 MQFIHDDNRHNLHPLTKFFAVICLSFTPFYRVSALYCWVVVATIAILFALQFNYRDAIKA VIYFGFLSLLPSDMNFRHIGLIHVLFSLILIIKAFYLPCLSAKLLIKTTDVGSLLSALSQ INVPRTIRIPIAVIFRFFPSFKQEYQNMHLAMKVKNITWRTPIKYITYMWIPLLILSSNI ADDIAKVAETKCIYNPIKRTHYFSIKFGLMDILYLLSLLLLVTKGCKLC >gi|308170106|gb|AEHR01000017.1| GENE 87 82129 - 82737 570 202 aa, chain - ## HITS:1 COG:no KEGG:FMG_1400 NR:ns ## KEGG: FMG_1400 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 202 1 194 194 108 39.0 1e-22 MENSKLKVKDLVNIGVFVVIYFLILGISSMTFVFLGMTMVKSTLALLCFALAPFVTGIIL GTPVILLMAKLQKPWGFFTFGILSPILLWLSGHNSFIPAVGGILLAAVAEFILYLGKYKS FKAMLIAYACYNIWTMLPLADILFVRAKRLKMIQKMGLALVNNVFTTPNILLILMFALVG GVLGALLGKKMLKKYFTKAGIL >gi|308170106|gb|AEHR01000017.1| GENE 88 82860 - 83018 167 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804229|ref|ZP_07698306.1| ## NR: gi|309804229|ref|ZP_07698306.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 52 1 52 52 83 100.0 6e-15 MKVRYLGNTEGISLTKNKIYEALDYEEGFLRVIDDTGEDYLYDSEKFQVIEE >gi|308170106|gb|AEHR01000017.1| GENE 89 83196 - 83393 241 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653345|ref|ZP_07906267.1| ## NR: gi|315653345|ref|ZP_07906267.1| minor capsid protein [Lactobacillus iners ATCC 55195] minor capsid protein [Lactobacillus iners ATCC 55195] # 1 65 84 148 148 128 100.0 1e-28 MFTKEEIKYMKSLGLNLDFHKPLLNEDYERIEDIVSHQLQVYGFDKNYNPTTIGILCENI LDKFD >gi|308170106|gb|AEHR01000017.1| GENE 90 83398 - 83643 71 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653345|ref|ZP_07906267.1| ## NR: gi|315653345|ref|ZP_07906267.1| minor capsid protein [Lactobacillus iners ATCC 55195] minor capsid protein [Lactobacillus iners ATCC 55195] # 1 79 1 79 148 139 97.0 5e-32 MFVKTAHAKIRQSQRNISNIDIEKALRNPIHKESIITDELGRKSQKIIGDFTTVVINPDT MEVITTYPTKKSKRQRYLKGR >gi|308170106|gb|AEHR01000017.1| GENE 91 84171 - 84344 93 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501498|ref|ZP_05744400.1| ## NR: gi|259501498|ref|ZP_05744400.1| hypothetical protein HMPREF0520_1008 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_0402 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0264 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9218_0461 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0345 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9216_0844 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0522_0356 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0219 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0631 [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF0520_1008 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_0402 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0264 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0844 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9217_0345 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_0461 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF0522_0356 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0219 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0631 [Lactobacillus iners SPIN 1401G] # 18 57 1 40 40 70 100.0 4e-11 MRVQMRWNPSSPLYKERMLIYQHSGSLKLRFDYKKRALIQCLFILGGKYAKEKKLTH >gi|308170106|gb|AEHR01000017.1| GENE 92 84287 - 84733 453 148 aa, chain - ## HITS:1 COG:no KEGG:FI9785_838 NR:ns ## KEGG: FI9785_838 # Name: ps135 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 2 140 3 141 191 112 47.0 4e-24 MAQPQKINGSNVLGLFRLEKNAATEKAAIINYQTSLDFEFKRDSDSTSTKTGSLSTSGSL ETTIKFSFVDNISKVSDDIRTSILNAEPAELWQVQLDRKNSEGKYFGCYVRGTVSSDSAK NDDGDNSTRECEFKCDGTPHLHYIRKEC >gi|308170106|gb|AEHR01000017.1| GENE 93 84750 - 85130 502 126 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804265|ref|ZP_07698342.1| ## NR: gi|309804265|ref|ZP_07698342.1| hypothetical protein HMPREF9214_0283 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0826 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1143 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9211_0854 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0266 [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9214_0283 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0826 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1143 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9211_0854 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0266 [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 126 1 126 126 239 100.0 6e-62 MHISLALFNYFFAKCQELGFDTYEVLPDDTVPYPFVRVNQATLTGGSTKTGFAGEITINL DLFGTLYQKLELSEMQQKLEAVGLTGIWLSDTSLVAVVDDYQAVNLLDTSTTTPLNHTNL SFKFRY >gi|308170106|gb|AEHR01000017.1| GENE 94 85130 - 85498 412 122 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804204|ref|ZP_07698281.1| ## NR: gi|309804204|ref|ZP_07698281.1| phage protein, HK97 gp10 family [Lactobacillus iners LactinV 11V1-d] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 09V1-c] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 03V1-b] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 01V1-a] phage protein, HK97 gp10 family [Lactobacillus iners SPIN 2503V10-D] phage protein, HK97 gp10 family [Lactobacillus iners UPII 60-B] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 11V1-d] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 09V1-c] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 03V1-b] phage protein, HK97 gp10 family [Lactobacillus iners LactinV 01V1-a] phage protein, HK97 gp10 family [Lactobacillus iners SPIN 2503V10-D] phage protein, HK97 gp10 family [Lactobacillus iners UPII 60-B] # 1 122 1 122 122 218 100.0 1e-55 MTFQIKWDGLDQLTEELRTMASGKALEKASVALGSQWQKEARAMERAKYTHGYWTGNQQR NTLVYWENGKKTIVLDPKTEYSVYTEYGTRKMDAMPVFKPTLDMTKKRAPSVIEYYLKKD IK >gi|308170106|gb|AEHR01000017.1| GENE 95 85482 - 85886 421 134 aa, chain - ## HITS:1 COG:no KEGG:FI9785_834 NR:ns ## KEGG: FI9785_834 # Name: ps131 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 112 1 113 118 112 55.0 6e-24 MDYLANIKALLMLPDSAKDDLINVIIDNTKRALRVRLGLSASDAVPDELSYIVVEVSVRR YNRLKNEGMVSYSQEGESIAFNSNDFADFEEDIKAWKDKNNKANEVRFINPYARALSNRY SSRANGRLLNDFSN >gi|308170106|gb|AEHR01000017.1| GENE 96 85903 - 86775 1200 290 aa, chain - ## HITS:1 COG:no KEGG:FI9785_832 NR:ns ## KEGG: FI9785_832 # Name: ps130 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 288 1 288 288 250 49.0 6e-65 MTVDANTIKTTDLVAQSIDFTEQFSQGLSTLLNVLGVTRKQALSQGSVIKLYKTEGTLVS GDVAEGDVIPLSKVTRKVSSTQELKFGKWRKVTTAEAIQKAGFNQAVQATDQKLLRLVQE QVKTNWFNFLTTATGTTTTNGVGFQVAVANAIGQFNVVWEGYGVQPVAFVNPLDVYTYLA KAPVSTQTAFGLNYIENFLGFSAVILSASVPAGKIYVTAPDNINLAYADLHGDLSGAFNF TTDQTGLIGVAHNELLNALSYETVVTTASVLYPEISAGIIVSEIKNEASK >gi|308170106|gb|AEHR01000017.1| GENE 97 86789 - 87373 786 194 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804258|ref|ZP_07698335.1| ## NR: gi|309804258|ref|ZP_07698335.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] # 1 194 2 195 195 285 100.0 2e-75 MEDNNLKNNQNTVDPKDSDVNPKDDKGKSKTGDVVSKLKERLSKKTAENSSLADQVADLR VQLQKFTQQDKANDEQASELDEAKKQLEALQLENQRIKASRQVEKDLQDAGLLIYSSDGV LEMLVGDTDKVTTQRTMAFIKFAQSLETGIRKEYHTGHTPRTSGKASLTRDEINKIADPA KRLEAIKNNLSLYN >gi|308170106|gb|AEHR01000017.1| GENE 98 87489 - 87749 282 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804275|ref|ZP_07698352.1| ## NR: gi|309804275|ref|ZP_07698352.1| hypothetical protein HMPREF9214_0288 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0831 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0859 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0271 [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9214_0288 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0831 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0859 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0271 [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 86 1 86 86 147 100.0 3e-34 MLDIKTAQDKAKQAIIDNYNLSKLISEKDISLNIVDVYYTFSFEISSNKLPKPEMVGYPD YVQVNCETEEVHFINSYLYDDLISKL >gi|308170106|gb|AEHR01000017.1| GENE 99 87826 - 88083 207 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804242|ref|ZP_07698319.1| ## NR: gi|309804242|ref|ZP_07698319.1| hypothetical protein HMPREF9214_0289 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0832 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0860 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0272 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9214_0289 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0832 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9211_0860 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0272 [Lactobacillus iners SPIN 2503V10-D] # 1 85 1 85 85 139 100.0 7e-32 MIDKDKAIEIAQKYAIDHLLVRNCKIEDLQATVIDDYFTIKVEPIEVTQDTIVYTNKSNL VTVDKRTGDTYLIDEDGYKPMVSRL >gi|308170106|gb|AEHR01000017.1| GENE 100 88080 - 88571 619 163 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804270|ref|ZP_07698347.1| ## NR: gi|309804270|ref|ZP_07698347.1| hypothetical protein HMPREF9214_0290 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9211_0861 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0273 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9210_0194 [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9214_0290 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9211_0861 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0273 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9210_0194 [Lactobacillus iners SPIN 1401G] # 1 163 1 163 163 312 100.0 4e-84 MLKRRGFDVTAIANPLYNKDARRDLGLLTANAEKMKDKVYNSASSFFIKKDIDIKRFVPE KAIDEELLNGLQPGQRGIISWGWAGRNVGHTINVERTSDGLKYVDAQIGQTADSWKGLKY PIRVGRYRIGGRMLSSFRWYRSDDKDFDERLLDLLVKGNEGQK >gi|308170106|gb|AEHR01000017.1| GENE 101 88605 - 88889 505 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804308|ref|ZP_07698385.1| ## NR: gi|309804308|ref|ZP_07698385.1| hypothetical protein HMPREF9214_0291 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0833 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1149 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9211_0862 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0274 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9210_0195 [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF9214_0291 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0833 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_1149 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9211_0862 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0274 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9210_0195 [Lactobacillus iners SPIN 1401G] # 1 94 1 94 94 162 100.0 8e-39 MITLKFMSIELLEDNLNEWVYSIYTDYQEGQIAINKHNFDGKLTSFEKASKRVRIKKETV EYEIYYRIVKLMKSQPGIKEYYWLHSTKKIEPLV >gi|308170106|gb|AEHR01000017.1| GENE 102 88894 - 90486 1463 530 aa, chain - ## HITS:1 COG:SPy0975 KEGG:ns NR:ns ## COG: SPy0975 COG5585 # Protein_GI_number: 15674985 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 5 309 8 306 541 94 27.0 5e-19 MTKVYWQQRMQGEKSFAKWIEQTENRLFDYYQVRYNELLEHLNAEIAKEYAALTRSTGMN LDLAKQTVSNLDIKAYSQLAKKVVREAHEARKNGNPKAFKGYSAEINRRMKIYNATMRIN RLELLKARLATWLLEVNAELDADLRKALSDGYVEHVTKQAGLLGTTVSSSAIDQGIQEAI AYMYDNATFSDRIWKNQDVIKASIDKVVSQGSLGGYGLEKMINQLHKFTNANYSNAKRIV RTEMTRVMDKAQEDVFKKADVKLVFWQVEKKPCAACLAIHDNDVGYGKGVYPIDDSPKPV EDTHPNCRCLRSAFTEYEAWQLQWAKSKDKGVYLDQYGRVRYSDGRLVEDYLEAEKLYNQ DLKNKSKKAKPAGAIVYDSSLSLSEKLKNKELEKSRLEAKRQKTFAQKYYATLRNYKRDF LVSKIAKNTGISSNIVIKAIEHVLDSKYNLDIDGKMVFQTFEPDADMAHSLQNLYLNNYD EADILLLHHENLEAYYMDKKGMSYVKAHKLTNKRYDYQDKIDQLKEEGKR >gi|308170106|gb|AEHR01000017.1| GENE 103 90479 - 91909 1537 476 aa, chain - ## HITS:1 COG:no KEGG:FI9785_828 NR:ns ## KEGG: FI9785_828 # Name: ps126 # Def: bacteriophage portal protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 2 450 3 459 468 443 50.0 1e-123 METLGTKGQVLSNGMFVYPKDELMDETEVNAFIDKNRGFTAKIYDRNMQYYLGKHDILKK TNATGIELNKIVDNIPKYLVDTYNGFFTGISPKITLDEDSLNNNLQNWNRSNSFFDKLSE ISKQVDIYGRSYAFIYQNESADTRVAVVPPTQCFIVYDDTIEHEPLAFVRYYKNSENLLQ ADIYYGNATQTYSEGKLLDLGLKSVYGMVPAVEFFENEERQGLYTDCISMIDALDDTLSQ KQDTIEYFANEYMYVLGGGIDLNEEELSYMRTHRLINVPTANAADIKIGFLERPDGDNVQ ENQLQHLNDKIYQTTGIPNLSDSNFAGNASGVAIRYKLLAMENKASNKERKFTQALRALY KVVFSIDSVINVSDAWEDLKFKFTRNLPANLADEASTANSLNGIVSKETQLGALSIVDDP KAEMERMEEEQDQQLKKSLEVTGADYEKLDDTNQEQPEANQKSIKSPFSNEEVDND >gi|308170106|gb|AEHR01000017.1| GENE 104 91923 - 93152 848 409 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0605 NR:ns ## KEGG: LGAS_0605 # Name: not_defined # Def: phage terminase large subunit # Organism: L.gasseri # Pathway: not_defined # 1 396 8 404 414 426 52.0 1e-118 MAISDLLAPKQEQVLRSYLNDKWKTLILSGAVRSGKTYIDNLLFLMELRRISKLAKKLNK PNPMYILAGFSADTIYKNVIAEITTTFGLNIKFDRSGHFRLFGVEVVKAYTGSERGRDSI RGMTAWGAYINEASLAKASVFSEIQKRCSAPEARIICDTNPDAPTHWLKKNYIDNTDPKA GIKTFFFTFDDNPTLDDDYKEKLKASTPSGVFYDRDILGLWCTGEGVVYRDFDQSTMTID RDKLPTDLTYYVGVDWGYEHTGTLIVFADDSQGNTYLIKEHAHKHRFIDYWVDLAHDVQQ KYGSTIPFWCDSARPDNLNEFLTHGIRAYNANKAINSGIEAVGSLMKAKHFFVVKNSADN WFNEVYQYIWNEKTGEPVKENDDSMDAMRYAIYNQHNKAKINLQRNTLF >gi|308170106|gb|AEHR01000017.1| GENE 105 93142 - 93609 480 155 aa, chain - ## HITS:1 COG:no KEGG:Apre_0833 NR:ns ## KEGG: Apre_0833 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 2 115 3 145 155 84 41.0 1e-15 MRARYTEWLEKDKLLLIQGWKRDGLTDEQIARNMSINPRTLEKWKANYEPIRQAIKRGRT EVNFIVENKLLKKALDGNTTAIIFWLKNNWRDKYNDSTLGPEERKMIQAKMRKLEADTRV SEAKALLAEQVSSQNNAELERMLKLLEVEGTEDGD >gi|308170106|gb|AEHR01000017.1| GENE 106 93714 - 94109 464 131 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01740 NR:ns ## KEGG: LCRIS_01740 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 4 128 3 127 131 101 42.0 1e-20 MSNNLLIYPIIVTECHDEAGHYYGAISPNIPGMVTDGQTLQELVIHAEDAIATMISGTKY PEVQDLKEWTLGPNDFVVYVTVNMLKWEAQHEKTVRRNITLPEGLNNWAKDNKINVSKVT TEALRSMQNTN >gi|308170106|gb|AEHR01000017.1| GENE 107 94159 - 94347 292 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501593|ref|ZP_05744495.1| ## NR: gi|259501593|ref|ZP_05744495.1| HicA family toxin-antitoxin system [Lactobacillus iners DSM 13335] phage protein [Lactobacillus iners AB-1] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 11V1-d] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 09V1-c] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 03V1-b] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 01V1-a] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners SPIN 2503V10-D] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners UPII 60-B] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners SPIN 1401G] HicA family toxin-antitoxin system [Lactobacillus iners DSM 13335] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 11V1-d] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 09V1-c] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 03V1-b] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners LactinV 01V1-a] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners SPIN 2503V10-D] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners UPII 60-B] toxin-antitoxin system, toxin component, HicA family [Lactobacillus iners SPIN 1401G] # 1 62 1 62 62 100 100.0 3e-20 MPIKPSKMVRLLLKAGFKEVPKGGGHRRFRHPDGRMTEVPMHGKELTPYTQRKILEQAKI KL >gi|308170106|gb|AEHR01000017.1| GENE 108 94958 - 95263 392 101 aa, chain - ## HITS:1 COG:no KEGG:LMHCC_2978 NR:ns ## KEGG: LMHCC_2978 # Name: not_defined # Def: phage protein # Organism: L.monocytogenes_HCC23 # Pathway: not_defined # 1 93 1 90 99 73 43.0 2e-12 MDKPLTINVAGLNYKVVVTEYFKASDDDRNLWGYCDYGDLTIYIRKSLSEERKQQTLIHE LTHAVFSEAGFTEQDEETVIRLSSVLYQVLKQNPHIFTFQS >gi|308170106|gb|AEHR01000017.1| GENE 109 95364 - 95933 725 189 aa, chain + ## HITS:1 COG:SMb20826 KEGG:ns NR:ns ## COG: SMb20826 COG2963 # Protein_GI_number: 16264314 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Sinorhizobium meliloti # 2 181 3 176 177 62 30.0 7e-10 MRYSYAFKRKCVEMYYQGLYPDTPDGICGKEFHRTIRKWVRIEESCGPEALKHKAQNKVW SPEDKYALVARVLSGESNKSVALTSGINEGMLYQWVRKYKIYGYNGLISKPKGRKSKDPD MKKIGTREPKKLNESEYEELIRLRAEITYIKAENEVIKKEIALREEKEAARLKAKKQQSS KNSVKKDTH >gi|308170106|gb|AEHR01000017.1| GENE 110 95951 - 96751 265 266 aa, chain + ## HITS:1 COG:SPy0198 KEGG:ns NR:ns ## COG: SPy0198 COG2801 # Protein_GI_number: 15674400 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 1 262 6 266 268 247 50.0 2e-65 MRMARSTYYLEINKADVVANRNQELLAEITEIFEQHKHRYGVHRVHRELINRGYRINHKR VQRLMHEAGLFGKRPKEKYHSYKGEVGKVADNIINRDFSTTAPLQKWTTDVSQFNFSWGK CYISPVLDMNTNEIISYDLSTSPNLEQISRMLDRAFEKFPSVEGLIFHSDQGWQYQHAYF RNTLKERGIIQSMSRKGNCYDNCIMETFFGRLKNEMYYGYEKDYSSFEEFSKAVEEYIDY YNNKRIQAKTKWMPPVQYRIASMCSA >gi|308170106|gb|AEHR01000017.1| GENE 111 97076 - 98197 923 373 aa, chain + ## HITS:1 COG:L55605 KEGG:ns NR:ns ## COG: L55605 COG0582 # Protein_GI_number: 15673415 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 8 370 3 355 359 158 31.0 2e-38 MPKQDKRVEKYETKKGIRYRFKTYVGTDINGKKIWATRSGFTSYTEAKYELDKLKLEGVD SFVKQKQIKVNDLFTQWFDTYQTTVKESTAHKTYEMYKIHIKPKYGNAYVDKITPASLQR FSNALSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSR EELDTFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLD NKYIVQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLD TIYKQLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQS KKKVAQSINDLNI >gi|308170106|gb|AEHR01000017.1| GENE 112 98749 - 99960 1375 403 aa, chain - ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 4 400 1 395 395 403 50.0 1e-112 MEMIKKILAVNAGSSSLKFKLFSLKDEQVLAHGQADRIGLPESTFVLKLANGEVYQDKTE IRTQDDAVEKLLSWLTKSKIVNDLSEIAGVGHRVVAGGEYFAHSTLIDQDNLHKIYELNE YAPLHNCHEADGIKAFMKLLPNVPQVGVFDTSIHQTLDQVHYMYSLPYEYYEKYKVRKYG AHGTSVRYVSQRIASILKRPLDELNMVICHLGSGVSITAMKNGQSYDTSMGFSPLAGVTM SSRSGDIDPSALQYILGKETDLNFDQMIDILNNKSGLLGISGISPDMRDIRKAISQGDER ASLARNIFINRIVRYIGAYYLELQGIDVIAFTAGVGENDIGIRKEIMDQMSCYGLIPDYD ANQINGIEKIVSAPNSKIVAMVIPTNEELMIARDVVRIAKISD >gi|308170106|gb|AEHR01000017.1| GENE 113 99971 - 100972 1158 333 aa, chain - ## HITS:1 COG:lin1617 KEGG:ns NR:ns ## COG: lin1617 COG0827 # Protein_GI_number: 16800685 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Listeria innocua # 5 330 4 327 332 157 33.0 3e-38 MEDLEHLNELYLSFEEVVDILRKELNVTFTEALVETFDNLEHKKIKVEANAPSAKIVELL TKKYANLEYEKLETSVKSHLFYLLTLKAADVDNFNSTQLPTPRILATIVALLWSKIVPQT AKEVIDPAIGSGTLLFSLIDQLRFLNHSKNSFVLTGIDNDPAMLDLADVSSYLNKLPVDL LRQDALQPWLTGKKDVAVSDVPVGYYPLDNNAKNFDNCQLSGHSFAHILFIEQIIKNLKP SGYAFLIVPKMILSGKEAADFMTWLTKKVNILAVVDLPDDLFANMKYPKSILVLQNHGQK MQLRKVLVTKLGSLKDKSSLVKLNVELNNWVNE >gi|308170106|gb|AEHR01000017.1| GENE 114 101063 - 101236 101 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809553|ref|ZP_07703411.1| ## NR: gi|309809553|ref|ZP_07703411.1| hypothetical protein HMPREF9215_0288 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9217_0349 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF0523_0376 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9215_0288 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9217_0349 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF0523_0376 [Lactobacillus iners UPII 60-B] # 1 57 1 57 57 87 100.0 4e-16 MNLKNNCIFSILKMKVPATALFCALLVIVTCIVFIKYYQSAFFADLQINLDIYKSLR >gi|308170106|gb|AEHR01000017.1| GENE 115 101220 - 101711 350 163 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1299 NR:ns ## KEGG: FI9785_1299 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 9 163 5 165 167 89 35.0 5e-17 MKIFKTKNKGFMLAEAIIAILITVLCFEILYSTINTVRTVSHKRDGVNNVAFAYIQLNRF IKDRELMLDIKHSDVKRAILKQKKKDEENKVYYETYSFYERKGQLRMSQGYMPLMMNLRT VYFSYVNKDVMKMKIVERDGRCSILAFKLKEMEKDQRADEPKK >gi|308170106|gb|AEHR01000017.1| GENE 116 101698 - 101847 70 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501493|ref|ZP_05744395.1| ## NR: gi|259501493|ref|ZP_05744395.1| hypothetical protein HMPREF0520_1003 [Lactobacillus iners DSM 13335] hypothetical protein LineA_05959 [Lactobacillus iners AB-1] hypothetical protein HMPREF9214_0125 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0928 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0290 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9218_0467 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9216_0850 [Lactobacillus iners LEAF 2053A-b] conserved domain protein [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0520_1003 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9214_0125 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9213_0928 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_0290 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0850 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9218_0467 [Lactobacillus iners LEAF 2062A-h1] conserved domain protein [Lactobacillus iners UPII 143-D] # 1 49 24 72 72 70 100.0 3e-11 MSLVYYSVVELQKIKTTVEIKVDRKLAEKMMAETKITTVKLHNRTYENI >gi|308170106|gb|AEHR01000017.1| GENE 117 101906 - 102337 258 143 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1272 NR:ns ## KEGG: LGAS_1272 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 10 143 7 138 138 79 29.0 5e-14 MLLRIKRLSRGFTLIESLIVLVITCSIISFPIIELKGYRDNLALINTRAQVKSAINFCLK ESIINKRVYFIRYSETSNKLKVMSDWSTAEKTFSINSQVKIINIDNLTIKKKSYVAPRTI YFKCGKITKRMTVQLMWGRLIEK >gi|308170106|gb|AEHR01000017.1| GENE 118 102321 - 102647 425 108 aa, chain - ## HITS:1 COG:SPy0103 KEGG:ns NR:ns ## COG: SPy0103 COG4537 # Protein_GI_number: 15674326 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGC # Organism: Streptococcus pyogenes M1 GAS # 5 89 6 90 108 59 37.0 1e-09 MKVLHKLLKRKVKGFTLIEMVVVIAIIAMLILLIAPNLFSYRDKANNTANDAFIKTVQMQ VDLYKDEYGKNITVSDMHDKNYLTDNQVKKIEANHITIKDGKVIAPKN >gi|308170106|gb|AEHR01000017.1| GENE 119 102662 - 103657 1037 331 aa, chain - ## HITS:1 COG:SA1373 KEGG:ns NR:ns ## COG: SA1373 COG1459 # Protein_GI_number: 15927123 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Staphylococcus aureus N315 # 3 331 9 355 356 88 23.0 1e-17 MFFKVFSKDKLNKSEQLVFLDYLQQSLNNGFSFNQSLKILPHVWNEKVNIIQKLSSNIAQ GNDIGQSLVAIGFSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIKSEMAYPAV LIVMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIISLIGIFFIGCSYVVILAKKQDYTSF KKLIHVPILGRLVKLYIHYLIVSEFAILMCNGYTLQQICNFFAHETNQSIAKTITCKMND ALIKGNDIEEIIKQEEFLPDSLVLLFGVGADTKELSKKCVLLSQTLFYELNFKLGKAVVS IQPFCFILIGFCILAMYLKILMPMYASIQNI >gi|308170106|gb|AEHR01000017.1| GENE 120 103629 - 104603 1113 324 aa, chain - ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 7 267 6 266 313 208 41.0 1e-53 MDTSMYADELIKHAIKQRVSDIFILPTTDGYTIKFKTLVGLQIVENISANKGVEVINHFK FIAEMDIAEHRRPQVGSFIKETNGKNVFLRFSSVGDFLNRESMVIRLIYDMGDCHYFFPE QFEKLKQLSKKRGMIVTSGPTGSGKTTTMYQLIKQISSEKFVMTIEDPIEILEPDFLQTQ INNQAGIDYLSLLKSALRHRPDILVIGEIRDAQTAKVAINAALSGHLVLTTIHAKSTYQI IDRFLGLGIKMPELENALTAISYQRLLPTVKNTFSCLLDIADATKWRKSVSENDTNFVDW QQNIENLYHKGVIDSDVFQSFLEG >gi|308170106|gb|AEHR01000017.1| GENE 121 104726 - 111808 9189 2360 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_20949 NR:ns ## KEGG: HMPREF0421_20949 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 135 886 80 873 2659 258 30.0 2e-66 MVGKNNELNKSRHIFEHINRYSIRKFKVGVASVAIAGCFVLPMGTNTVSATEVKTEDTVN KQENKKSATDTNDKETKQSVNTSTESLHKTPDHQDPKKKDQTSKEKDHQAVTSEIKDKKP EQKTKKDTQIDETSHSNKVPVNPNHLEAKDQSTANDQVTNEKSGKVYNLRFVYTLNDNVV SQLYQPYELTLTERELNKKDFVKYLEVPHLVGYRTYAGTYIKKDGKYVTATDLDEKKTHY IKIDAAYIKEHAKADSADKSGLHYKGIVNVPYTPEQKVYYVRHLVQKFDNPNEFEDVQLP DSVYKVTKTITENGKQKQVVLTRNYGTVGTVAYAQPIFIPGYRPETNLLRSALPDSDQPV IFTLRYYRDSYEVKYDTDNGTSIRTKKVYYQQPVTEVANPTRRGYVFQGWTVSGLSDSEH SGSKINKEQKFTSIKSMPANGVTFKAHWKAVEKAEYTVNVWAQKADLVDYAHPDNIVNYD FVGRVKRTVDTFAKNGDGSVDESKPTTIDDPHIEQTEIEKMAFPDTVESDRKTAAEFGKY YVLNDRFTKVMNHLMVDKKTGKTTLKFTKPDARHQSRAIIRPEGDTVLDLIYDRKPYDLI FAKGDVAQGVDTSTSGVDSGYNTPIVKPDAEGKWVTYWYDNTAQPDFDQNGDFQFDERNI VKMKPRTDGKPLYSPYVVRARYGASLQYRWPIESEVRMQRHEGVDLDTHGDPTRGSDDAI GFLGFVLKNKAEKGKSEYAEYGAYRDTPPYRVTKSFLGGTDSLPNPHLTLYGKPLKSNWR LLTTDLTDLRTDRGKVEPQKVIIKLETDQSAKKNDDKDRHYVFSLESYSKNDTSNTDYIF NCPLIKGYQVVPEDAHQKAEKVDVDEMNDKLDEIMEEDYETYQKEHPDYKGTLEDYKLLV LSANQRWQYEFYLRHHPEYLPELNPMVADYVAKHPGRHKNDFFNLLISGRLTGDKEQVQK AYEQLEAGFTRYKQLSEDINNYVKESYEQYKKDWVAKGGDDSDIEPEDPDDPDHLSSGSP VLELPEYKRWVLGNRKLLDKDHPLDEMYEDYKTKHPDFLGSPTDFTFLFEQHASPIYYTK YNSTDKLDGPDNMDTEPYEKNMLLVYRYKRCHYKLQFFGNRDADKALAEEDHPYSENIRN ASYNDEVKVVPLKANDPKHHLPYQWEFRGQTITRPTYLPEDYVFKGWALDAGGTQPLIPS GFTKKEQKNLTPIGMPEGGLALYPIWGPSEVKHKVTINYWGNKSYDMELVHNQILHEHEK PEGTDDPFLKDPPRQKGYAFTGWVIEVKDKDGKVQEHPYAFDNPVVEDMTLKAKYVPDVR VTATIHHYLLKPGETIKAYYDLFKQEQDLDKQITACTDANKVNELRATKSELTKKRMAMV DIDAVQTIDNLRPDAAYSAQAVYEGPQYFPDTQFDQITVNKDAKKNVAWFVYQVFGQNVY KVQYHDANGKDILPPQTIRTGNLDWDVATAPQIQGYRFNKVSVPDRDAKNKQKDDTHPQG QMTFEVTPEGKGVNKVYNVIFTYDDVRILKRKDQSQATPAGYHRIYYNTDGNGTLRATDD KDKQPVANLTYDVVDGLQNGLLPDIKPQANPGYRFVRWDPAVPDTLASVKSRTYTAIFEP DISTRKDNPYIISVGDPLPDAKELLAGAKNLPNNVIVSYAKGQGQLNGDFIVPNGAKVPD RTYVDRPVKLLINYDAVDDAGKPSHRTIELDTTLTVVNPVVAQSRILSADLSDQDQKNSG IDKHTLAVDRYIRTHYKLVTFDAKQNGDFASPDVERSYYVKPDVEVTIPRPGVIAKAGYD FSGWKQGNTPYSKVVKGKFSDKTTIEADYHAHAMTLKPMILSVGDQAPEAKALVTNSDKL SDAAKFSYSGSAPTTQKAGKQQVTVVNTDGVKQSTTIQVIDNIVSNKQLQGLSEAEKAYI KAHYKRIVFSAGQHGQFDPKDETIYYVNPDRVHDLSQLAPHVIAKMGYKQGNGLANTGFS CKLKDVRFDYDTDIVATYQEVDPTTKHLIIRQGMSLPKASEFIESLPQGTDVAYNFGSES AQKYAQDEVGHTKVIPLTLTYKQADKITRTANCVAYLTVLPSVIAQGSETAPDCVDYIKK NYHTITFDAGKDGQLDGATTYFVDPDREVDLTSIQPGVTANTGQQFIGWNHKLKGQFTQN TTFEATYRQAPKPEPCPVCPIPKPEPKKGTFKEIHVYVTKDEDGKIISTIQSENKVNGYD GDEYTTEKNEKDGFEFKGIKDLQDNPTYSTDGKSTTGKIVGDKNQSITYVYEKVVKKEQP VPTPTPAPEPTPEPMPKPAPEPKQELEPKPESQPKPQLEQKSEQKKLPQTGSDEGYALGM AILGLSCLLTLADKKRKNKK >gi|308170106|gb|AEHR01000017.1| GENE 122 111968 - 112459 420 163 aa, chain - ## HITS:1 COG:CAC2751 KEGG:ns NR:ns ## COG: CAC2751 COG0454 # Protein_GI_number: 15896008 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 2 159 1 164 167 97 34.0 7e-21 MLKIRNAVKEDVPRIMEIYCYAQEFMIKCGNPTQWGHSYPTRELIDCDILNQACKVVYDE TGIHGVVALYEGIDPTYVHIEEGSWLNNDPYITIHRIASDGRVHGVFKIVADYCKNMIDN VKLDTHANNLIMQSLIAKNGFTRCGIIHVDDGSPRIAYQWSKK >gi|308170106|gb|AEHR01000017.1| GENE 123 112610 - 113041 429 143 aa, chain + ## HITS:1 COG:SA2153 KEGG:ns NR:ns ## COG: SA2153 COG3279 # Protein_GI_number: 15927943 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 1 143 2 147 147 58 27.0 3e-09 MKINLHVDASISEEHAEIWVKQMKPNLESMLQYLNNNQVLWCYYDDQLKPISLNDIFIIQ TDDRKLDISTQNRHYSCRKPLKEVKAILNNDFIEASRSAYFNFKHIDHLVLLNDGAIDVV LTNQERIAISRRKIKNLKERLGL >gi|308170106|gb|AEHR01000017.1| GENE 124 113038 - 113484 456 148 aa, chain + ## HITS:1 COG:no KEGG:LAR_1321 NR:ns ## KEGG: LAR_1321 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 148 1 148 148 126 46.0 3e-28 MKKYILSAIKGMFLGIAIGLCISIFFNYLNGADTYLPSTPVFTSHFARPLDAVTFSVVLW ALMGLVFSIGALIFKIERWTLLKRTIVNFFVYYIFFTPLAFMAHWFIIDLPHILVFTIMF TLIYVLIWFINAQLIKNDIKQINEKLRK >gi|308170106|gb|AEHR01000017.1| GENE 125 113668 - 114927 995 419 aa, chain + ## HITS:1 COG:PA0438 KEGG:ns NR:ns ## COG: PA0438 COG1457 # Protein_GI_number: 15595635 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Pseudomonas aeruginosa # 20 412 4 398 416 316 48.0 4e-86 MKNYFRKISQPDQSRVNEIDQEYAHSRVKGNRKNFWQMLVIMVGFTYFSPSMTAGGHLGL GLNLSQFIIAVILGNLFLAIYTGCLAYIGQHTGMNLDLLARQTFGSKGAHLASFVIGITQ TGWFGVGVAMFAIPVAAFYHLNVYLLVLIMGFLMTLTSVKGIKALSIFGIIAVPLITVLG FYSVYLSFHTSGSLQNMFSNHPLKPLSMAMALSIVIGNFISGGTSTPNFTRFSKNSIGAI SATVIAFFVGNIFMFIFGATGAAAFGKADIFDTLIMQGLAIPAILSLGLNIWSTNNNALY ASGISLANITNNSMKLMTMIAGTIGTLLSIFLFEHFTTYLSLLSSLIPPIGSIIVVDYFM HRSNYKTEECPINYNLSALCPIFIGAFVGCVIKIGIPPINSLIAAIISYLLLQYIKINK >gi|308170106|gb|AEHR01000017.1| GENE 126 114939 - 116174 1588 411 aa, chain + ## HITS:1 COG:STM3334 KEGG:ns NR:ns ## COG: STM3334 COG0402 # Protein_GI_number: 16766629 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Salmonella typhimurium LT2 # 17 406 22 411 426 489 58.0 1e-138 MLLKNAYIENATKSQDIRIEKETFTAIADHLTPLPNEEVIDLNYKLVLPPFIEPHVHLDS ALTAGQPKWNESGTLFEGIETWALRKKDLTVEDVKNRAIQAIKKQASNGIQFVRSHVDST DPNLTAMRALLEVREELKGTIELQICAFPQEGILSFPNGATLLEECLKMGADVIGGIPHY EFTREYSVQSLHKIIDLALKYNVLVDVHCDEIDDDQSRSLETLACLALESGLKQKVTASH TTAMHSYNNAYVQKLFRLLRLADINFIANPLVNTHLQGRIDTYPKRRGMTRVKELLANGN NVAMGHDDIFDPWYPLGDGNCLDVIHMGLHVGHMMGYKEIMNSYRFSTYNAARVLNISDR YGIEVGKPANLIVLNGKNFYQVLNEHSEVLYSIHKGKVIAKTIPKKKEILF >gi|308170106|gb|AEHR01000017.1| GENE 127 116770 - 117435 574 221 aa, chain - ## HITS:1 COG:no KEGG:TDE0330 NR:ns ## KEGG: TDE0330 # Name: not_defined # Def: CRISPR-associated Csn2 family protein # Organism: T.denticola # Pathway: not_defined # 1 221 1 223 224 89 29.0 7e-17 MKLLSNDLEKTFSLNQHVLNTLVIEDNTFFREFISKIVHFVENDSNELEIMDEDEEISPT KCEIIVDIFRANPNNTKILTKLYSNLISGLSSDERYQDSINFESQLYSFMDKIAFDCDYH LTYGDIDYKSIFKALNLSIDTDIKGLMSNFVSYLDLSYKLLGKKIYFAVNLNTFFSQKDM GVLNDYLRYNNIVLVCLDNSLKRTLFEDENIRIIDQDLSEI >gi|308170106|gb|AEHR01000017.1| GENE 128 117432 - 117638 243 68 aa, chain - ## HITS:1 COG:SPy1048 KEGG:ns NR:ns ## COG: SPy1048 COG3512 # Protein_GI_number: 15675043 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 68 39 106 113 59 45.0 2e-09 MIQESVYTKITKNMSSAGAINKKLRAHVPTKGLIQLLTITEKQFSRMEYLTGDEKSIYIT DDRRLIIL >gi|308170106|gb|AEHR01000017.1| GENE 129 117743 - 118621 692 292 aa, chain - ## HITS:1 COG:SPy1047 KEGG:ns NR:ns ## COG: SPy1047 COG1518 # Protein_GI_number: 15675042 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 3 278 4 278 289 182 36.0 5e-46 MTWRIVVISKRSKLYLKMGYLMVRDFENKVNGIFLQDISHLIIATTEASITVSLMNELQK NKIKLIICDEKGNPAAEMLPYYNSYNTNEKIKAQILWKNNTKADIWQYIVKEKIRKQMLL LHAKNFEKASLLAEYIKEVQPLDSTNRESHAAKVYFNVLFGMDFSRNDDSNANACLNYGY SIILSAVNRSIVAMGYLTQLGIFHDNMFNQFNLSCDLMEPWRILVDKEVCDMNYHVFDKK QKMQLINLLNKKVLIDGKTQYVNQAINIYCQSIIDALNENDVSLIRFPEYEL >gi|308170106|gb|AEHR01000017.1| GENE 130 118618 - 120597 1766 659 aa, chain - ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 459 698 1158 1334 157 30.0 7e-38 MQLMSKKFTFKSKIDEINKSYYQHDKFNYKSMIDSLYVSPATKRILWQSLKVVHEISKIM KHDPEKIFIEMARSKEDHPKRKLSRKADLKQVYKDSKKQIISIIGKDKYQDLSNELDNKD DRDLRWDNLYLYYTQLGRSMYSLKPIDISELMNKNLYDQDHIFPKSKKYDDSIENRVLVE KELNVKKSDIYPISDANIIPQKIKGQVESFWKMLYDHKLIGDKKYARLIRSKAFTDDELA GFIARQLVETRQATKETADLLKRLCPKSRIVYAKAQNASIFRQKFDIPKSRTINDLHHAQ DAYLNIVVGNIFDTKFTQDPRNFIKNTKDSRNYNLEKIYDYNVERNNYVAWIAPDGETNG TIANVKCNLSTKDFRVTRPSFYKKGALFNQNLSRKGSNLAPIKEHSPKSNPLKYGGYSGK NNSFFVVVAGKDNKGKDIVKLIPVNTLIYNKMLHCDYKAKQELLTSYVANNFAINNFRIV KDDIKMYSLVKIDGAYYYLVGGTDERIEVKNAMQLLLSKDSIKAVKILEKESKDQFANIK NYKDIDIKLGRTFNEVVSKYTNSVFGKSMLISDKYRKDIFKSVEKSILEFNHLDTIGKAD NLLKFVTLMRPSGSAHSLKMVGLIERIRKSNVISNFNEFKLINQSVTGLFENEEDLLKL >gi|308170106|gb|AEHR01000017.1| GENE 131 120834 - 121388 383 184 aa, chain - ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 14 165 444 598 1334 94 36.0 1e-19 MLAKDDQEGITVKDKIISLLTFRLPYYIGPVNPAVHGKFAWVKRLANGKVTPWNYKEKID IDASHEEFIKTKLSKCSFLIGCDVLPKNSLLYQKYMVLSELNTIKFNGVNISEKLKDDIY QNLFKNIQKVTKKRLQNYIKEHENIIGDVIVTGIDNAFKQGLVSYLKFKKLLVIRLMMIV IRKY >gi|308170106|gb|AEHR01000017.1| GENE 132 121382 - 122002 528 206 aa, chain - ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 14 196 269 429 1334 72 29.0 5e-13 MFRDETLKNSNYKNLKFSDNRFDDERDGYAADLGDRIDLLILLKQIYDASILESMMSQAR VSIDGHKYISSAKVCAYEKHKSDLKRLKSLIKKYLPSEYNNIFRKITEKDNYVAYSKSNI TNNKREKALKYVKYVDFTKYLTKKLKTIKTQDAEDDQEIFEIKGELEKQSFLPKQRTLDN SIIPYQLHLMELKKYLIINLNIMTFC >gi|308170106|gb|AEHR01000017.1| GENE 133 122296 - 122724 601 142 aa, chain - ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 139 1 149 1334 78 39.0 5e-15 MNNNYYLGLDLGTNSVGWAVTDDHYNIIKFHGKHMWGMRLFEEAETAKDRRLHRQARRRR QRLVERINLLEELFDKEISKVDQGFFARKKESDLHFEDKTTKSEYALFNDKSYTDRDYYK QYPTIFHLIMDLIENDKKGIYV >gi|308170106|gb|AEHR01000017.1| GENE 134 123015 - 123746 1087 243 aa, chain - ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 238 1 238 241 286 62.0 2e-77 MSGHSKWHNIQGRKNAQDAKKGKIFQKLSRELFMAAKSGGPDPSGNPSLRLVMDKARAAN MPKSNIERAIKKAEGNSDEHYDEITYEGYAPGGVAVLVEALTDNKNRTASAVRVAFTRNG GTMGATGSVAYMFDRKGYIVIDRSTTDADEDQVLMDVMDAGGDDLQASDDAFEIYTDPKA FTGVRDALEKAGYKLADAELTMVPQNTTAVPAEKKEQFERLIDALEDDDDVSNVYTAAAD EDE >gi|308170106|gb|AEHR01000017.1| GENE 135 123929 - 124720 875 263 aa, chain - ## HITS:1 COG:mlr2757 KEGG:ns NR:ns ## COG: mlr2757 COG3177 # Protein_GI_number: 13472455 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 3 239 8 238 263 132 35.0 8e-31 MKFTKLDGLKVQMSKYRPLDQDQLKALEKEIRVEHVWSSNAIEGSKISKFETEAIIERGM TIHGESIGDVLSTIDLNEAYDYMLDLASRKQPLTQTIIRDLNRLSLAKTHPEWGGEYRTL EVHSAKIDYNPYAEPFDIRPDMDALITWANSAQNNLHPVQYAADLHYKFVTIHPFRDGNG RTARLLMNLALIEAGFPVINIMPDKESRNEYMDILLDSQIKKDPTKFENLVGKYTEETLL KHIRILQLNEENKKDAEQDTNLK >gi|308170106|gb|AEHR01000017.1| GENE 136 125252 - 125548 347 98 aa, chain - ## HITS:1 COG:no KEGG:LJ1234 NR:ns ## KEGG: LJ1234 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 96 1 96 98 119 71.0 3e-26 MILDTKKLQKEIIQNKKEHGFNTTDIKFELLLLYGEVNELFQAWLKDDDQNIGEELADVA IFLLGIAEILDKDLGVEIIEKMKVNKNRIYRNGKKVND >gi|308170106|gb|AEHR01000017.1| GENE 137 125860 - 126690 827 276 aa, chain + ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 20 263 32 283 302 105 25.0 7e-23 MIILLCTACTKENKSNSKISIVSSTNVYADIAKNIVGKYGISSAIIKSSSVDPHDFEPKT SDAKDLKHADIIIANGMDYDGWMKKLAKANGKKITRVGEDLMHLKTDANPHIWYNLKMPQ AYVKYLVKRLSTLDKKHSAYYKNNAQKYLKKIAKIQEIAKNIKAIKKPVLVSEPVFDYAL IAAGYKIGNPEFEEAVEKETDPSPKIIKHMNKMIATKKIAFFVNNTQVNSATINSFIKKA KANKIPILKVRETIPNDTTYFDWMLTNYQNLAKISK Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:37:13 2011 Seq name: gi|308170055|gb|AEHR01000018.1| Lactobacillus iners SPIN 2503V10-D contig00141, whole genome shotgun sequence Length of sequence - 57528 bp Number of predicted genes - 47, with homology - 47 Number of transcription units - 27, operones - 12 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 222 330 ## gi|309806998|ref|ZP_07700980.1| Gram-positive signal peptide protein, YSIRK family - Prom 329 - 388 8.0 - Term 342 - 385 6.9 2 2 Tu 1 . - CDS 396 - 1742 1979 ## gi|309809604|ref|ZP_07703461.1| Gram-positive signal peptide protein, YSIRK family - Prom 1763 - 1822 6.9 + Prom 1756 - 1815 13.2 3 3 Tu 1 . + CDS 1998 - 2660 502 ## LGAS_1773 hypothetical protein + Term 2672 - 2721 -0.7 - Term 2856 - 2885 -0.2 4 4 Op 1 . - CDS 2903 - 4003 1558 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 5 4 Op 2 . - CDS 4015 - 5319 1386 ## COG1705 Muramidase (flagellum-specific) - Prom 5346 - 5405 8.8 - Term 5413 - 5466 6.3 6 5 Op 1 . - CDS 5512 - 5778 380 ## LA2_00960 hypothetical protein 7 5 Op 2 . - CDS 5815 - 6027 257 ## gi|312871542|ref|ZP_07731635.1| conserved hypothetical protein - Prom 6153 - 6212 7.3 + Prom 6124 - 6183 9.9 8 6 Tu 1 . + CDS 6226 - 6660 502 ## FI9785_219 hypothetical protein + Term 6696 - 6741 7.7 + Prom 6667 - 6726 6.1 9 7 Tu 1 . + CDS 6773 - 8845 2361 ## COG3158 K+ transporter + Term 8846 - 8873 0.1 + Prom 8858 - 8917 6.5 10 8 Tu 1 . + CDS 8959 - 10143 1059 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 11 9 Op 1 42/0.000 - CDS 10173 - 10994 931 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 12 9 Op 2 . - CDS 10998 - 11651 184 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 13 9 Op 3 . - CDS 11674 - 12462 787 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 12533 - 12592 5.1 - Term 12549 - 12593 2.5 14 10 Tu 1 . - CDS 12604 - 13800 1235 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase - Prom 13831 - 13890 7.0 - Term 13857 - 13915 10.5 15 11 Op 1 58/0.000 - CDS 13923 - 17588 4162 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 16 11 Op 2 . - CDS 17607 - 21290 4051 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit - Prom 21324 - 21383 10.1 17 12 Op 1 . - CDS 21493 - 23916 1948 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 23938 - 23997 6.7 18 12 Op 2 . - CDS 23999 - 25177 1128 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 25209 - 25268 8.6 - Term 25237 - 25285 8.1 19 13 Op 1 . - CDS 25295 - 25534 147 ## gi|309807034|ref|ZP_07701016.1| conserved hypothetical protein 20 13 Op 2 1/0.000 - CDS 25491 - 25805 267 ## COG4720 Predicted membrane protein 21 13 Op 3 . - CDS 25795 - 26649 831 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase - Prom 26818 - 26877 3.1 - TRNA 26664 - 26737 81.6 # Pro CGG 0 0 - TRNA 26777 - 26848 79.2 # Gly GCC 0 0 - Term 26767 - 26808 1.1 22 14 Op 1 3/0.000 - CDS 26902 - 28398 1794 ## COG1190 Lysyl-tRNA synthetase (class II) 23 14 Op 2 . - CDS 28431 - 29426 479 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase - Term 29445 - 29488 3.1 24 15 Op 1 14/0.000 - CDS 29506 - 31551 1223 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 25 15 Op 2 . - CDS 31635 - 32927 1021 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 26 15 Op 3 . - CDS 32958 - 33296 418 ## LJ0280 hypothetical protein 27 15 Op 4 . - CDS 33296 - 33508 154 ## LGAS_0273 septum formation initiator - Prom 33530 - 33589 6.2 28 16 Op 1 3/0.000 - CDS 33752 - 33994 385 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 29 16 Op 2 7/0.000 - CDS 34008 - 37340 3727 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 30 16 Op 3 . - CDS 37361 - 37918 535 ## COG0193 Peptidyl-tRNA hydrolase - Prom 37973 - 38032 8.0 + Prom 37958 - 38017 11.6 31 17 Tu 1 . + CDS 38057 - 39028 1197 ## COG0039 Malate/lactate dehydrogenases + Term 39065 - 39123 13.1 + Prom 39083 - 39142 10.7 32 18 Tu 1 . + CDS 39167 - 39850 652 ## COG0517 FOG: CBS domain + Term 39864 - 39907 7.0 - Term 39855 - 39892 3.2 33 19 Op 1 5/0.000 - CDS 39927 - 41054 1287 ## COG0787 Alanine racemase 34 19 Op 2 . - CDS 41058 - 41420 299 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) - Prom 41453 - 41512 10.7 35 20 Op 1 2/0.000 - CDS 41538 - 43001 1587 ## COG0513 Superfamily II DNA and RNA helicases 36 20 Op 2 . - CDS 43017 - 44384 1366 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase - Prom 44444 - 44503 5.2 - Term 44455 - 44507 7.1 37 21 Tu 1 . - CDS 44523 - 44774 415 ## PROTEIN SUPPORTED gi|116628937|ref|YP_814109.1| 50S ribosomal protein L31 type B - Prom 44826 - 44885 10.2 + Prom 44851 - 44910 8.1 38 22 Tu 1 . + CDS 45088 - 46416 1021 ## COG0477 Permeases of the major facilitator superfamily + Term 46422 - 46451 0.5 + Prom 46441 - 46500 8.1 39 23 Tu 1 . + CDS 46566 - 47336 352 ## MARTH_orf139 hypothetical protein - Term 47209 - 47260 5.2 40 24 Tu 1 . - CDS 47338 - 48348 1012 ## COG0270 Site-specific DNA methylase - Prom 48376 - 48435 7.2 41 25 Op 1 . + CDS 48863 - 49564 256 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 42 25 Op 2 . + CDS 49568 - 50308 473 ## CLD_2969 antibiotic ABC transporter, permease protein 43 25 Op 3 . + CDS 50308 - 51048 466 ## SMU.657 putative MutG 44 25 Op 4 40/0.000 + CDS 51081 - 51740 768 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 45 25 Op 5 . + CDS 51731 - 53110 712 ## COG0642 Signal transduction histidine kinase - Term 53436 - 53469 2.2 46 26 Tu 1 . - CDS 53625 - 55946 1133 ## gi|309809594|ref|ZP_07703451.1| hypothetical protein HMPREF9215_1218 - Prom 56044 - 56103 2.6 47 27 Tu 1 . - CDS 56768 - 57007 245 ## gi|309809619|ref|ZP_07703476.1| hypothetical protein HMPREF9215_1220 - Prom 57212 - 57271 7.0 Predicted protein(s) >gi|308170055|gb|AEHR01000018.1| GENE 1 3 - 222 330 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309806998|ref|ZP_07700980.1| ## NR: gi|309806998|ref|ZP_07700980.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LactinV 03V1-b] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LactinV 03V1-b] # 1 73 1 73 259 124 98.0 2e-27 MKRERLNKFSIRKLTVGAASVLIGVAFGATTVSATGESAGQQAGTPTTVTPKKDNPTDPK KDNPTDPKKGNPT >gi|308170055|gb|AEHR01000018.1| GENE 2 396 - 1742 1979 448 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809604|ref|ZP_07703461.1| ## NR: gi|309809604|ref|ZP_07703461.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners SPIN 2503V10-D] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LEAF 3008A-a] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners UPII 143-D] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners SPIN 2503V10-D] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners LEAF 3008A-a] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners UPII 143-D] # 17 448 1 432 432 660 100.0 0 MNSVLKKNDLIHGGLDMKKEKLNKFSIRKLSVGAASVLVGVALAGGATTAFASEPSTPQP SVSQTEKSSVVVFKTADNKLVGYTVVKGAPTEANVKADVPDGYKLAPQFSAKQVGTDEKP EYEVAVVEKSLVEKVQEERIKRTGLSYEDITKKHDAKVKFDEAHAAVKPAKDALDAANEA MATANTEVEVAKAQLALYKELLAKNPKANVADKVVEVQADYVKAVQEQLKQSFATAKAKA EFVTAIRKEAEAKAAYEKLGGQLADLSAYNTLEEIAGKMDEVKAEVAKAKTAVEAAKVEL VKAKVEVAGKTDPVELIIAKFKLEDATTVLNNALATYNAKAARLNTLKTYFDEVHKTALV STKAVTPSAAETPVAEAAEVAFSGVAKTFVKGHPNYAVAMMDANGVYTGKFLKQGSRFKV FGKKTIKGRVCYRLGTQSQWVPAEFLVF >gi|308170055|gb|AEHR01000018.1| GENE 3 1998 - 2660 502 220 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1773 NR:ns ## KEGG: LGAS_1773 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 29 218 100 289 293 192 50.0 1e-47 MKRNRESIIRENLHFRDNWHFLLDIDDPRTHYVLRVVQMIATIIIFLLTYLQHVVVINFQ SAGANDALTMFQGIANQSNNYYFNQGSNLFSFLNRLMGGNLWSTYRYAINSSQFMQDPVG LKIMIWSFLLILISAFCILTHFFKEPYVYRYSLAGAIASSIFLILTPLLIHHWANQFAIN KHLSLWQANQIFSVDCLAYFAIFCSLIVLSISIVRFYKHF >gi|308170055|gb|AEHR01000018.1| GENE 4 2903 - 4003 1558 366 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 48 363 155 438 444 114 29.0 2e-25 MHISKSEWLGVAVCFGALASMPNTVVKNSPVAMTTVKADTSYVENKSYGVDVSSFQSTDM SNYAQNGAKYAFVKTTEGTWYTNPKASGQVSSALANNMMTMSYHFAVFGNDAQKASAEAN YAVNASRNVGVPTGSYVVCDWEAGDGNNINGPVEANTDAILSFMDTVNANGYKPMLYSGA YLMRNKIDTDRVVAKYPNSLWVASYATMGRIDDPDFEYFPSMNGVAIWQFTHNWRGLHVD GNINVLPLSKGGVSQAPSSVPATPSVDINQVIASASQNVAQKEQPAITSTTTDTDQDVPF TAVGRVNYVPGYGIMLWGQPGYKNALNRYLPHGSRWKIFKKRYINGSVYYNLGGSQWVDG KYIIIE >gi|308170055|gb|AEHR01000018.1| GENE 5 4015 - 5319 1386 434 aa, chain - ## HITS:1 COG:L68758_1 KEGG:ns NR:ns ## COG: L68758_1 COG1705 # Protein_GI_number: 15672254 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 7 191 28 214 242 130 45.0 6e-30 MNRSTITSAVTAILIAGAGISVDNILNTNSQTHQVVDATTQQEFLNKAIPAATKASSKYG TYTSVMLAQAILESNWGNSQLAQEPNNNLFGIKGSYQGNSVSFSTSEFSDDNGYYTVDAK FRKYPTYHESFDDNGNLLRNVLNGYYSDTWIENAQSSSDATNGLQGKYATAPNYAQSLDK IISQYNLTKYDPKITDVNERKVIQKTCSVTSAPVESSVGKLVKTLHRGDVVDVTKYIAYG NGVKYALTNYGWIDAIAIVPIVSQAPVARMSDASVVNKIVKINYIPKYGIAVWQKPAHHV VGKYLAHGTSWRVDRQISINNHLWYRVGTNQWIDSQYTIVTYDSKKVAEPKTQAPASPVS SAGRKEVAIRGIVTVSCGNYQKLAVVDAPAGKLTGKKLANNTRWRFFKIAKADGHFWYNL GGNQWVIADYVYEK >gi|308170055|gb|AEHR01000018.1| GENE 6 5512 - 5778 380 88 aa, chain - ## HITS:1 COG:no KEGG:LA2_00960 NR:ns ## KEGG: LA2_00960 # Name: not_defined # Def: hypothetical protein # Organism: L.amylovorus # Pathway: not_defined # 1 74 1 74 89 65 47.0 5e-10 MTKTSKTLKLIFKNDHHKVSTLSLPYASVNLPEAEVKEVMDTIAKENIFAKEGVGLYTEP QAAQYVERTINPIFTTTKSKHPIAPAIN >gi|308170055|gb|AEHR01000018.1| GENE 7 5815 - 6027 257 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312871542|ref|ZP_07731635.1| ## NR: gi|312871542|ref|ZP_07731635.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] # 1 70 1 70 70 118 97.0 2e-25 MKTKTVSQKVEYIFINPKYDEGEKVFTFKNLKPNADYASVVNVGKAIAKLHKGDSFKNAT LIQSNEIIAE >gi|308170055|gb|AEHR01000018.1| GENE 8 6226 - 6660 502 144 aa, chain + ## HITS:1 COG:no KEGG:FI9785_219 NR:ns ## KEGG: FI9785_219 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 144 1 139 139 155 59.0 3e-37 MTEDLKNTETEETTEETTEDQFEVVVPEPNRVEMPATEYKEYPDYLNVFANFYIAKFEQA DLEIMAAFDGNHDIIEINTYILANEAFGRRNLIKHVLNIHAQNFENILANIKAKTGLAVE SVRTFDEWNDWYSERRNNISQTLS >gi|308170055|gb|AEHR01000018.1| GENE 9 6773 - 8845 2361 690 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 7 650 10 647 666 661 53.0 0 MNDKLKNRLSIAGLLITIGIVYGDIGTSPLYVMKSIINANGGLVNINRELIIGSISLILW TVTLLTTIKYVLIALQATNHGEGGIFALYALVRKRAKWLVMPALIGGAALLADGALTPAV TVTTSIEGLKGMKLGQHIFVPDQKSVIFITIIILLLLFLIQRMGTDVIGKAFGPVMLIWF TFLGVVGFCNMIGDMSILEALNPIYAIKIMFSPANKVGFFILGSIFLATTGAEALYSDVG HVGKANIIGSWPYVFVCLSLNYLGQGVWILHNPNYHAIGDLNPFFAIVPEQLRIYAIILA TLAAIIASQALITGSFTLVSEAIQLKFIPRMNIIFPSKQQGQIYIPSVNKMLAIATLSIV FFFKTSEHMEAAYGLAITATMLMTTLLLFEYLGQSNHSIFTRLLFVVIFTLIETAFLISS LVKFVHGGYVTVLIAGLILGVMYIWYYGNKVRDLRENRNSYVRLDQYIDMLTRLSHDEDY PTYATNLVYMAKVKYNKFIKREVIYSILDKRPKRAKAYWFVTVNVTDEPFTNEYSVNTFG TKNVINVQLYLGFKQQQRVNIYLRQIVHDLIADQTIEAQPQEYTTTPGRDVGDFSFVIVQ DVVSPQTQLTNYEKNIIKARVWLQNLSSNPASWFGLDYSDTVIERVPLILGTRHKFYINR VPASKYSIIEKEKEEKKHMLAEYRKKLHNF >gi|308170055|gb|AEHR01000018.1| GENE 10 8959 - 10143 1059 394 aa, chain + ## HITS:1 COG:lin2952 KEGG:ns NR:ns ## COG: lin2952 COG1473 # Protein_GI_number: 16802011 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 3 383 6 386 400 417 49.0 1e-116 MNLQEELLNKLKEDETEIIRIRRHLHEYPEISFHEKETATYIKKYYQQLGCPIHDCGDGY GFYIDIDSNTAGPHLALRADFDALAVQENNNLSFKSKHPGVMHACGHDGHTAYLMVLAKN LWQIKDKLRGKIRIIHQPAEEISPGGAISMLKDGVLDGIDQIIGLHLMSSMPTSMIGIHK GETQTGRASFEIKLTGKGGHASMPHLSNDAIVAGAYLVTMLQTIVSRRINPFDTASVTIG SFEGVGSFNAIKENVTLKGDVRIMKESTRKLVKSQIFQLVNGLQTSFNIKASINYDDNYP VLINNEQLANEAITALTKAKLPEVSTVMDPGPQDPSEDFSYFSQNIPGLFFYVGCMAADQ TNHPHHSPDFYVNENSLLIAAKAAAIITLHTLFK >gi|308170055|gb|AEHR01000018.1| GENE 11 10173 - 10994 931 273 aa, chain - ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 254 4 259 269 90 31.0 4e-18 MLSYDFMQYAYLASSFIAITCAVVGVYVVARGFSFLAHTLSEIGFAGAAFAVFLGINPLW GMLLFTLLGSLCVGELSLRSEQKESAISAISALFIGLGVLFLAISHANSRYATDILFGSI IGVDLSGVIQLVLLSLVVILVILCIMSPLNYDSFDHIGAISHHLNTALVGAIFLMALGMS VAIGSQVVGSLLVFILLTLPASTARYLGKTIFSMLAWAVAIALIGVWLGLALGYYTNWPV TFFISMIEVLIYLLVYIGKLIKKIKDHLLGYNA >gi|308170055|gb|AEHR01000018.1| GENE 12 10998 - 11651 184 217 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 13 190 31 226 329 75 26 6e-13 MCTILQVNNLMMKFEDRLIFDRVNFTLQKGSTTALLGSNGTGKTTLIKILMGMLPATSGD FQYSPKIKVAYVPQFRNLDADYPLSIKAFVELNMPLFKSKKDKAEINRILAETHLSQIQH LRMGAASGGQRQRAYLAQALLDRPDLIILDEATASLDPTAKEELMLLIKHLNEKHQMTVL FTTHDIMLAKKYMHEYFIFHNKTLIHGQMKDFAEEEI >gi|308170055|gb|AEHR01000018.1| GENE 13 11674 - 12462 787 262 aa, chain - ## HITS:1 COG:ybiV KEGG:ns NR:ns ## COG: ybiV COG0561 # Protein_GI_number: 16128790 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 2 242 3 245 271 145 35.0 6e-35 MIKLIATDMDGTWLREDKTYDEAMFVRIFDLMQEQNIKFVVASGNQHANLLTRFPNHVDK IYFVAENGAMITQGKQILRIVDIPDDIYNLMLNIVDELSYPSIVSGVTGGYILKKSGQEF YLENYKYYKNLKQMDDYKEVDDRIFKVSIVVPSELMPKIITDLRYRYPEIGFVAGSANTI DMSTPGMNKAVGLKYLSYKLGIKSSEMVAFGDSGNDVGMLEYVGHSFAMGTALPEAKKAA KHIIGSCDESAVQYKILDLLTR >gi|308170055|gb|AEHR01000018.1| GENE 14 12604 - 13800 1235 398 aa, chain - ## HITS:1 COG:lin1939 KEGG:ns NR:ns ## COG: lin1939 COG0452 # Protein_GI_number: 16801005 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Listeria innocua # 4 389 6 390 399 311 45.0 2e-84 MSKIAIYISGGIAAYKSILVLRELQKQGHEVRVGMTANAQKFVGVQTFAALTHTTVLTDL WDNDHQTEIGHLELAQWCDLALVVPATANIIAKLANGIADDAVTTALIATDKPIIVVPAM NNKMWHNAALQRNIKQLIDDGMQVMTPETGYLAEGYQAQGRLPEPDKIVQFVNANLHCDS SLVGKKVVITAGATLEKIDPVRYISNFSSGKMGWAMVQAFLQRGADVTLIYGKVSVNIVP FARLTTIHVASAQEMLTVAEHEFSDADILVMTAAVADFRPKNYCPQKIKKVTGNDSYQLE LVKNPDILYTLAQSKKAKQVVVGFAAETNNLLANAHTKLSKKGADMIIANDVSQDVFGSD LNEVTIITKDAPDVKLPRMNKQKIAESIVNHIIKLNSK >gi|308170055|gb|AEHR01000018.1| GENE 15 13923 - 17588 4162 1221 aa, chain - ## HITS:1 COG:SPy0099 KEGG:ns NR:ns ## COG: SPy0099 COG0086 # Protein_GI_number: 15674322 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 1 1189 1 1190 1213 1712 69.0 0 MIDVNKFESMQVNLASPNKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWTC SCGKYKGVRYRGIVCDRCGVEVTSAKVRRERMGHIELAAPVSHIWFFKGIPSRMGLILDI SPRALEEVIYFAAYIVIDPGDTELEFKQLLTDAEYRENKAKYGDRFQAKMGAEAIQDLLK QVDIQEEAKKLKEELKTATGQKRMRAIRRLDILEAFCNSGNKPEWMIMDCIPVIPPDLRP MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPRIIVQNEKRMLQEAVDALIDNGR RGRPVAGPGNRPLKSLSHMLKGKPGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP MALELFKPFVMHELVKRGLASNIKNAKRKIDREDDDIWDILEYVIKERPVLLNRAPTLHR LGIQAFEPVLVAGKSIRLHPLACEAYNADFDGDQMAIHLPLSDEAVAESRLLMLAAHHIL APKDGKPIVTPSQDIVLGNYWLTQTERGREGEGMIFNSPEEATIAYENGDIHYHTRIGMS ADSMPEKKWPEGYEHGIFVTTYGKLVFNALFPKDFFYVNEPTQENLTSPLAEKYFLKPGE NIHDKLDSLPLGKAFKKGFLADSIAQIYKLYRVQRTSDYLDDLKELGYTVCTTSGLTIGV EDIPTLKDKDDIVRENRQKVDVISKQYRRGLITDEERHDRVISIWNNCKDTIQNELAGLF DPRNPISVMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEIPVTSNFREGLTVLEMFMST HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREEDCNTDRGITVSAITEGDEMIEPLF DRLVGRYTSKSVIDPTTGETICPANVMMDEDMAQKIVDAGVTSVTIRSVFTCNTQHGVCQ KCYGMNLATGEDVEVGEAVGTVAAQSIGEPGTQLTMRNFHNGGVAGANDITQGLPRVQEL FEARNPKGRATISEVTGEVTSIEEDPAEHTREITVKGQTDTRTYSVPYTASVAVAEGDQV ERGQKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIADKHVEVMARQMLQKV RILDPGETDILPGELMDIGEFKARNKDVIISGGIPATAQSVMLGITKAALETNSFLSAAS FQETTRVLTDASIRGKSDPLLGLKENVIIGKIVPAGTGMPIYRKMEPKADIPAENLPEKE NESDSKEKSVYAQAQSTGSEN >gi|308170055|gb|AEHR01000018.1| GENE 16 17607 - 21290 4051 1227 aa, chain - ## HITS:1 COG:L0137 KEGG:ns NR:ns ## COG: L0137 COG0085 # Protein_GI_number: 15673782 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Lactococcus lactis # 4 1160 1 1156 1196 1672 69.0 0 MFSLLGHAVNYGSHRTRRSFSRIKEVVKLPNLTDVQTESYKWFLKEGIREMFDDIMPISD FSGKLSLEFVDYKLLKPKYTLEEARDHDANYSAPLHVTLRLTNHETGEIKTQDVFFGDFP LMTDSGTFVINGAERVIVSQLVRSPGVYYHCDYDKNGRPIYGTTVIPNRGAWLEYETDAK NLAYVRIDRTRKLPMTVLVRALGLESDSDIQDFFGKSDSLSFTLEKDMHKNPADTRVAES LKDIYERLRPGEPKTTDSSRSLLYARFFDPKRYDLAPVGRYKINKKLSLKNRLLRQTLAE TLADPDTGEIIAKKGTVVTHELMDKLEKYLDRDDFKTVTYQPSEEAVLPDPITVQEIKVF SKVDPERVVKLISNGHIGEDVKHITPADVLSSINYFFALQDGLGSIDDIDHLGNRRIRRV GELLQNQFRIGLARMERVVRERMSIQDIATVTPQQLINIRPVVASVKEFFGSSQLSQFMD QNNPLGELTHKRRMSALGPGGLSRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSMA TYAVVNKYGFIETPYRRISWETHKVTDKIDYLTADVEDNYIIASANAPLNEDGSFKEKIV LARHKEENLEVSPDKLDYMDVIPKQVVSVTSACIPFLENDDSNRALMGANHQRQAVPLIN PHSPLVGTGMEYRAAHDSGDAILAKAAGVVEYVDANVIKVRRDDKTLDEYVLEKYRRSNA TKNYNQTPNVHCGEKVVEGEVIADGPAMENGELALGQNPIIAFATWNMYNYEDAVMISER MVKDDVYTSIHIEDYESESRDTKLGPEEITREIPNVGEDALKDLDEDGIVRVGAEVQDGD ILVGKVTPKGVTDLSAEEKLLHAIFGEKAREVRDTSLRVPHGGGGIIQNVRVFSREAGDE LAPGVNKMVRVYIVQKRKIQVGDKMSGRHGNKGTIALVCPEEDMPYLPDGRPVDICLNPM GVPSRMNIGQVLEMHLGIASKHLGVHVATPVFDGASEEDMWNMVREAGLGKDGKTVLYDG RTGEPFHNRVSVGVMYYLKLTHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEV WALEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGEKIPKPGVPESFRVLVKELQSLGL DIKVLDSDKNEIELRDMDDDSDEHLNIDSLSKLAEQQEKKKLAEEAEEQEAEETDQVDEQ SNFDESDEEEEDFDDLEFPTSNDEVSD >gi|308170055|gb|AEHR01000018.1| GENE 17 21493 - 23916 1948 807 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 798 6 806 815 754 49 0.0 MNIPYSENAKKVLDIAQQKATMLKHAVISTEHVLLAISTMEECSAYQTLKKYKVTESRVE NIINEFYSGYGETVVTEEYCIFSPRLKKVLQCAQRLALVLKQDTITTNILLMALIKEKEL TSRLILSDNCGIDIKELLKVLRYTISKANSVNSKKHSSTPALAKVSVDLTRQALRGMIDP LIGRTKELKRVIQVISRRVKNNPMLVGDPGVGKTSIAQGLALAIVNKEVPVNLLNKRILS LDLASLVAGTKYRGDFETKMKTIINEVRRDGSIILFIDEIHTLVGAGGAEGAINASNILK PFLSRGEIQVIGATTFDEYQKYLEKDPALARRFQRIKVGEPTAKETLGILQGLKSKYEEF HNVNIEADALKEAVDLSVRYISNRFLPDKAIDVMDEACSAVKIKHNATEKDSSGELKVQI ADLAEQKQNAVIAQDIAKAGQLYRQELQLKAKLQKMLQQKDTSKPKRPLVTVDQVEKVVS ELTGVPVTKMQRQESKRLAKLESILHQRVIGQNLAVEAVSRAIRRSRSGIKDLNRPIGSF LFLGPTGVGKTELAKALADAVFGSEKNIIRVDMSEYMDKVAVTKLIGSAPGYVGYEAGGQ LAEKVRRNPYSVILLDEVEKAHPDIFNILLQVLDEGFLTDSKGRKIDFRNTIIIMTSNLG SRSLKEDKTVGFATSNQDINGVIKEKVSAATKNFFRPEFLNRIDEQVVFESLDKKQIRQI VVLMINQLVQRLQEKKIELKITTGAMDILAKDGFDPEMGARPLRRAIQHEVEDVVAKYLI SGELHEHQILKLSAKNGKLTFAISDNK >gi|308170055|gb|AEHR01000018.1| GENE 18 23999 - 25177 1128 392 aa, chain - ## HITS:1 COG:L56488 KEGG:ns NR:ns ## COG: L56488 COG0436 # Protein_GI_number: 15672039 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 4 390 3 390 391 325 44.0 9e-89 MSKLSENVHSTLNQIPKFKLFNFSQYALKFPDVIQLTLGEPDFNTPDHIKLAAIKAIINN HTRYAPQRGIPALLNAISADVEQKLGLHYDPKDEIIVTNGVTEGCYATIMALANPGDIFL LPTPGFPMYVADVAIAGAEIVEIDISKDNFKLTPQLLQKYLDKYGDRVKGLIMVNPSNPT GVAMNQAELDALADVIRGKNIFVISDEIYNCLWYEDEIGSIAKALPEQTIMFNGFSKTYC MTGWRIGYICAPREISAQIFKVHCFALTDTVTFVQDAAIEALVNGQADCLPMKKAYIERR DYICDALAKMGWEHPFPQGAFYVFAKAPEFLEQDDEKLAYDLINNAKIAVAPGSYFGKGG EHYLRFSYAISLNDIKIAMERLKKYTAERKLQ >gi|308170055|gb|AEHR01000018.1| GENE 19 25295 - 25534 147 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309807034|ref|ZP_07701016.1| ## NR: gi|309807034|ref|ZP_07701016.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] # 9 79 99 169 169 116 100.0 5e-25 MVLFILNSKNRTWSKYLALFLGSVVMIAGYVVADSYLYSLKAGWLGIGTNILQALIGAIV SLSLYFALSKKIHNIFEIN >gi|308170055|gb|AEHR01000018.1| GENE 20 25491 - 25805 267 104 aa, chain - ## HITS:1 COG:SP1597 KEGG:ns NR:ns ## COG: SP1597 COG4720 # Protein_GI_number: 15901437 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 93 1 91 153 61 41.0 4e-10 MKSKRIKLNVFTALMIAMSVVLGRCFLIPIFWTRGNINLCDAGIMLASLILGPFYGALVG GISGMLLDLISGYAQFAIFSLMAHGLEGLVIGFIYFKLKKSYLE >gi|308170055|gb|AEHR01000018.1| GENE 21 25795 - 26649 831 284 aa, chain - ## HITS:1 COG:SPy1209 KEGG:ns NR:ns ## COG: SPy1209 COG2240 # Protein_GI_number: 15675173 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 284 1 281 288 113 25.0 4e-25 MQKMLIIEDLSALGQISMVSAISVATIMNVKPALLPTIILSTQSEGFGDPVSLTLEQWQN KAIEHWNSLEQEFDTMMIGYIGCISGVQNILSFLPLIRKKKLVVDPAMADQGSLYPNLPL TYPSMISTLCQYADVIVPNFTEACLLAQVDYANDSLNQSKLNQLVDKLVQRFPSTEIIIT GVPLANKLAVVYVNKQNIASPMIWSVESIARHFYGTGDIFTAIVSACLAKKMSTEKAVKI AINALELAVKDSAQLTDHELLYGLKMTRLQEYLLDIEGNEIDEK >gi|308170055|gb|AEHR01000018.1| GENE 22 26902 - 28398 1794 498 aa, chain - ## HITS:1 COG:SP0713 KEGG:ns NR:ns ## COG: SP0713 COG1190 # Protein_GI_number: 15900610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Streptococcus pneumoniae TIGR4 # 1 487 4 491 491 652 66.0 0 MNDQLIVRRKKMDELRAMNVDPFGEKFDRQDLARTLNEKYIQEDKEELNDDMPQTRVAGR MLAKRGKGKVGFADIYDRTGKIQIYVRKDIVGEENYQIFKQADLGDFLGIDGHVMKTDTG ELTIRASHITFLSKALRPLPDKYHGLQNVEQIYRQRYLDLISNQDSYKRFLNRTKIIQAI RDYLNSLDFLEVETPVLHNIPGGAEARPFITHHNALDINLYMRIALELPLKRLIVGDMER VYEIGRVFRNEGLDTHHNPEFTELETYCAYWDFHDVMDEAEGIIRAAAKVVSEDGKINYQ GTDIDLGKSFRRVHMVDLIKEKSGVDFWQPMTDDEAKKIAEEHGIQCEKFWKVGHVINAF FEEFCEGTIVDPTFVYGHPVEISPLAKKNKKDPRFTDRFEIFILGKEYGNAFTELNDPID QRQRFEAQMAERAAGNDEADMIDEDYIRAMEFGMPPTGGLGIGIDRLVMLLTNAPAIRDV LLFPTMRPERFDDLDSEE >gi|308170055|gb|AEHR01000018.1| GENE 23 28431 - 29426 479 331 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 3 331 26 350 353 189 31 4e-47 MSKSWKIRDVVIPNQVVVAPMAGISNAAFRMVCKQFGAGLVVCEMISDHGIIYRNKKTLD MMKIDPNEHPMSLQIFGGSEETLVEAARYVDDNTHADIININMGCPVPKVTKTDSGAKWL LDPDKIYQMVKAVVNNVQKPVTVKMRTGWDEDHIYAVENALAAQEAGACAVAMHGRTRKQ LYTGHADWGILKEVSDALTIPFVGNGDVTTPQLAKKMLDEVGCSAVMVGRAVLGNPWILK EITHYLDTGELLAPQTVEERVTTCKEQLRKLVELKGEKIAVPEFRRQAAYYLKGIPRSAR TRAKINDVWTQQEVYNLLDEFVEKFESKLDK >gi|308170055|gb|AEHR01000018.1| GENE 24 29506 - 31551 1223 681 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 16 656 14 630 636 475 42 1e-133 MKNKRNRLLSNGLFYIFIFVILLSGINWALGGSDGNGTTKNIRYSDLIKDLKNNKIKSIN IQPANGAYTVTGTYRKPQALDKRGGTRFDFFKNSNKPVGATKFSTTMLQNDSVVKKVSDL AQKHGVAFSGQGESQSGNWISTAVMLIPTLIFIVMLWMMMSQGGKGGRGMMNFGKSQVKP RDPSKNKIRFSDVAGEEEEKQELVEIVEFLKNPAKFTKLGARIPAGVLLEGPPGTGKTLL AKAVAGEAGVPFYSISASEFVEMFVGVGASRVRDLFDNAKKTAPSIIFIDEIDAVGRKRG NGIGGGHDEREQTLNQLLVEMDGFEGDEGVIVMAATNRSDVLDPALLRPGRFDRKVLVGC PDVKGREAILRVHAKNKPLANDVDLKEVARQTPGFVGADLENVLNEAALVAARRDRDEIT ASDIDEAQDRVIAGPAKKDADISEAQRKRVAYHEAGHAIVGLVLSDSRTVRKVTIVPRGR MGGYNIMLPKEDQAISTKKQLMEQVAGLMGGRAGEEIVVGDQSTGASNDFEQATAIARGM VTQYGMTEVGMSQLESANTQDQMVKPYSESTAEKIDLAIKNILDEGHKVATDIINTHRDT HRLIAEALLKYETLNEKQILSLFKTGKMPEENDYPSEKDALNYEETKEALKRKEDKFLES DSEDQKGPDDAKDSEDPKTND >gi|308170055|gb|AEHR01000018.1| GENE 25 31635 - 32927 1021 430 aa, chain - ## HITS:1 COG:BS_yacA KEGG:ns NR:ns ## COG: BS_yacA COG0037 # Protein_GI_number: 16077135 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Bacillus subtilis # 1 233 1 233 472 144 36.0 3e-34 MKKIINFFSKYKLSLADKKIILAISAGPDSMALLDMMRQIVDDPQSQLIICHVDHCLRND SYLESEIITKYCQQYKLQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTA HHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLA YIVDYTNQENETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYH KLLNGIVQVNAVDLSDFNCHQLSLYFNWLIDKEWGRQVYFESLDLSDNVQNTKDHFTLVR YLSHFYICPSDIILLKNHQQEVVLDQCFSWLKTKYIITLNKLDLPEVGYFYANKTSKFIA RNLRANDRLKLPNGSHVKPKKKFAEKKIPTFMRNTYLAILINDDIVFVQDIFKNQEYNIN YQRYNIYTLF >gi|308170055|gb|AEHR01000018.1| GENE 26 32958 - 33296 418 112 aa, chain - ## HITS:1 COG:no KEGG:LJ0280 NR:ns ## KEGG: LJ0280 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 112 1 114 118 77 40.0 1e-13 MKYLVGLRVSAQVDQVIASGIKVILNNGRRGFIHWRDFGPLWDLKKNSFTKGQILRLVIV AINEKGEILLSLNRVNESTLVDPTNPFNKSDDFAGTLKCLLKEAEDLFNQFN >gi|308170055|gb|AEHR01000018.1| GENE 27 33296 - 33508 154 70 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0273 NR:ns ## KEGG: LGAS_0273 # Name: not_defined # Def: septum formation initiator # Organism: L.gasseri # Pathway: not_defined # 1 68 56 123 125 62 52.0 4e-09 MARIQTNKINNQVYSLKKELYTKQALHKKLKAESYDLKDLDYLLKVIRYKYYYSKPGEFI YNIQDKKDSN >gi|308170055|gb|AEHR01000018.1| GENE 28 33752 - 33994 385 80 aa, chain - ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 79 17 95 105 73 56.0 1e-13 MRIDKFLKVSRLIKRRTVAKEMADQERVLVNGRQVKSSYNVAINDIIEIQFGVKALKVKV LNIKETTKKAEASDLYEVVE >gi|308170055|gb|AEHR01000018.1| GENE 29 34008 - 37340 3727 1110 aa, chain - ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 24 1059 26 1122 1177 949 45.0 0 MKLSELIAADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENR AQQIYSSLVELFEENMVHFFPVEPLLETQAAVSSLDELSQRLDAMSFLLTKQKGIVISTP QALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFALRGDILD IYPINIAYPYRIEFFDDEIDNIRTFNSVSQRTKDSLTEVVIEPADDQLDKLYQNEDYTTI LDYLTESGIICFDDIRAIRQNIVQIDARNRDYLAHETSTNIKNSRLDFTSIFNQIVQAKI YSSLFQVSVNDLKIDQLLNLHTREPQQFFSQMSLIKNELSVYELQQQTVIIQADNLVRAK QIKSTFADYGIDITIAAENKLIPNKRQIIVDNFNQGFVLPRISLVYLTEHDLFNRQPHIH KKIKSLENAQQIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGKKGDYITITYRNHDQL FVPADQLGVVQKYVASDGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRATEK GFAFLPDDELQRDFEASFPYLETPDQIKAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVAL RAAFKAIDSGKQVAFLVPTTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNL SNGKIDIVVGTHRILSRDIKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPI PRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNGQIFFLHNKI QDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPN VNTLLVENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTAL GSGFKIAMRDLSIRGAGNILGKQQHGFIDSVGYDLYAQMLDQTIKQKRGDKVCHKTNAEV RINLEAYIPTEYISSQKQKIEFYKKIKHANNVKAIDDIADELIDRFGTYPKSVENLLNIA TIKVLADTAQILSITNIDEKIDIVLDQKASEELKGPNIFRTLEHVCFRARVSVDHDCLHV RLILDSKSSWRTIFNELKVFLQAVIDILHK >gi|308170055|gb|AEHR01000018.1| GENE 30 37361 - 37918 535 185 aa, chain - ## HITS:1 COG:lin0245 KEGG:ns NR:ns ## COG: lin0245 COG0193 # Protein_GI_number: 16799322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Listeria innocua # 1 185 1 184 184 167 43.0 1e-41 MKLIVGLGNPGLKYQKTKHNTGFMAIDYYLKKNGLSFNKEKFEGFWIKTKIKGEDVILLE PQTYMNDSGKSVTQLVDFFKIDAHDILVIHDDMDMPVAKIRLRKSGKSGGHNGIKSIINC LNDSEFNRLKIGIDHPTKETVVSWVLTPFSSDDCIKMEATFATVSQIIDDFIDNKSIEFL MNKYN >gi|308170055|gb|AEHR01000018.1| GENE 31 38057 - 39028 1197 323 aa, chain + ## HITS:1 COG:L0017 KEGG:ns NR:ns ## COG: L0017 COG0039 # Protein_GI_number: 15673313 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Lactococcus lactis # 1 316 1 316 325 400 63.0 1e-111 MTEEKIHKVILVGDGAVGSSYAFAMVQQGIAQELGIVDIVKDRTKGDAIDLSDATPWIAP KNIYSAEYSDAKDADLVVISAGAPQKPGETRLDLVNKNLKILSAIVEPIVESGFKGIFLV AANPVDILTHATWKISGFPKDRVIGSGTSLDTGRLQRAIAELEHVDPRSVNAYMLGEHGD TEFPVWSYNNVAGVKVSDWVKAHPEVGENKLEEIHKTVADAAYTIINLKGATFYGIGTAL ARITKAILNDEHAVLPLSVSMNGEYGLHDLHIGTPAVVGRKGLEQVIEMPLNEDEQKRME ASAKQLKEVMDRAFKETGVKVRQ >gi|308170055|gb|AEHR01000018.1| GENE 32 39167 - 39850 652 227 aa, chain + ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 210 1 210 211 236 55.0 4e-62 MLIKSLVYKKDYLTTVNEKATLAEALQILEDSGYRCVPILDDSGKLFRGNIYKMHIYRHK SQGGDMNLPVTYLLKNATKTIKVNSPFFQVFFNIKDLPYIAVLDEQDYFYGILTHSKLLG MLSDAWNIKNSSFVLTVLSDNERGNLVKMAKIISKYTNIASCLTLDVKLGELVRRNLFTL PVGVSNDTMKAIVDKLEKKGFVVAEIEDLQSGTILRSDEKPGQYLNK >gi|308170055|gb|AEHR01000018.1| GENE 33 39927 - 41054 1287 375 aa, chain - ## HITS:1 COG:lin0885 KEGG:ns NR:ns ## COG: lin0885 COG0787 # Protein_GI_number: 16799958 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Listeria innocua # 1 373 1 368 368 324 44.0 1e-88 MISGIHRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGA QGLCVAILDEAIELRKAGIKVPILVLGITLPKFALLAAENDISLTVGDLDWLKQASTFLS GTKLKIHLAIDSGMGRIGFNEDDAFLKANDYLLAHPEYDVEGMFTHFSTADCHDLEYFDS QVKKFDHFKKMLRIKPKYIHCDNSAASIFNRQVNSDLVRYGIAMYGLNPSSAPHGIEIQP KFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGFKV KVGDVYCPIVGRVCMDQFMVLLPEKMPVGTPVELISADAKAPNNIKAVADYANTIHYEIA CLLSDRVPREYLNKF >gi|308170055|gb|AEHR01000018.1| GENE 34 41058 - 41420 299 120 aa, chain - ## HITS:1 COG:lin0884 KEGG:ns NR:ns ## COG: lin0884 COG0736 # Protein_GI_number: 16799957 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Listeria innocua # 3 118 1 117 118 107 42.0 6e-24 MLVLRGVGIDIVDLDRIREQIKKGDLFAKRVLTSKEFEQYQKYQGNRQVEYLAGRFSCKE SFSKAMGVGLGTIVKFKEVEIIDNDLGQPEMTAKSYHGRIFVSISHEKRYLVTQVVLEDI >gi|308170055|gb|AEHR01000018.1| GENE 35 41538 - 43001 1587 487 aa, chain - ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 438 3 440 516 555 63.0 1e-158 MKFSELNLKPELLKAIKRAGFEEATPIQEKTIPLVLSGKDVIGQAQTGTGKTAAFGLPIL QTLDKKQEGIQALIIEPTRELAIQTQEELFRLGRDENAHVQVVYGGADIRRQIRSLKQVP NILVGTPGRLLDHLKRRTINLSHLKHVILDEADEMLDMGFIQDIESILTFASNDHQTLLF SATMPKPILQIGEKFMHDPQIVQIKSKELTANLIDQYFVRLKENEKFDILCRLIDVQDPE LSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILVATDVAA RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSITFVTPNEIGYMKTIERLTRK KMTPLRPPSDKEAFDGQLSIANKKIQELLDSDLTKYTKEAEKLLENNSALDLVAALLKDM AKDAEQVKVEITPEKPLPFKNRRGNTQNFKRRYRSDDRDRNIKRHRKPNAQTRERNIKHN FVIKKKD >gi|308170055|gb|AEHR01000018.1| GENE 36 43017 - 44384 1366 455 aa, chain - ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 453 463 336 40.0 7e-92 MKMQLSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGERDGHDYVANAVANG AVAALWQKDHANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDV CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEPLLQARAQKLNQLQATF GFNSTDTIYATNFNSYMHHASFTINDSKVKFTIPMIGKHNVSNALAAILVGRTFGVPDVE IAQALANFVPTANRMQWEKGDLGEAIMSDVYNSNPTAAKAVLTSFSQVDVDAFGRRIAVL GDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSALHYYEKDHM DRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL >gi|308170055|gb|AEHR01000018.1| GENE 37 44523 - 44774 415 83 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116628937|ref|YP_814109.1| 50S ribosomal protein L31 type B [Lactobacillus gasseri ATCC 33323] # 1 83 1 83 83 164 93 1e-39 MKQGIHPDYQEVVFMDSSTGAKFVSGSTLKPKETIEFEGKTYPLVRVEISSDSHPFYTGK QKFAQADGRIEKFNKKYGISSKN >gi|308170055|gb|AEHR01000018.1| GENE 38 45088 - 46416 1021 442 aa, chain + ## HITS:1 COG:NMB0388 KEGG:ns NR:ns ## COG: NMB0388 COG0477 # Protein_GI_number: 15676302 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis MC58 # 7 439 13 449 451 434 53.0 1e-121 MEKTKKLPTLALSTLMMMTLGNLGTSMAFQLQSANMARIFQTLGADPTRLGFFFILPPLA GMIVQPLVGYYSDRTWIPRLGRRLPYLMLGTIVAVIVMCLLPNAGSLGLSTSAALWFGAI AILFMDLSSNMSMQPFKMMISDMVNIAQKDTAWSWQTIWSNIGGVFATILPTILTIIGIK NTASKGIVPDSVILSFYIGALILIVTSIFTICNVHEYDPITYAQYHKLANKKSEVHGLIN ILKKAPKVFWTLGIVQFCSWVSFQYLWTYGPGTIAQNIWHTANAKSEAFQLAGNWYGILL GIQTIIAILWGFVLVKINDKTRKPMYILGLIVGALGYFVLANAHTKLGSIIAFICIGIVW VTINAIPFTILTNALSGSNIGVYMGLFNSWICLPQVVASVASFVLYPLLNKYMPNMIMIS GIVSLIGAASVLIIKETYGEKK >gi|308170055|gb|AEHR01000018.1| GENE 39 46566 - 47336 352 256 aa, chain + ## HITS:1 COG:no KEGG:MARTH_orf139 NR:ns ## KEGG: MARTH_orf139 # Name: not_defined # Def: hypothetical protein # Organism: M.arthritidis # Pathway: not_defined # 27 240 6 219 243 128 44.0 3e-28 MEKWKLFELDCNAYLNKKYGNFFTHFGFSNSTISDIKYENNKKMFYIEVKMPSAQSGQFV LLPDYQNKKFVFSPNNKTKPNKSTDFIIAYMNKYFEKYAHVDSIGQNIDIDPKIFNEWIT NAYKDKGVKFMITKGKDYIIFPINQYGNYFFITAKYRIKKSGSSKVPKSKQQEVLKKLTQ MNINFELTDDFNIKSNNHLNKLKFQVDDSEYMFSYFKENIYHIRKLSNTRNANVIFSIEL RKEQNPTDLENFVNSL >gi|308170055|gb|AEHR01000018.1| GENE 40 47338 - 48348 1012 336 aa, chain - ## HITS:1 COG:NMA1500 KEGG:ns NR:ns ## COG: NMA1500 COG0270 # Protein_GI_number: 15794400 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Neisseria meningitidis Z2491 # 12 326 20 337 337 216 41.0 5e-56 MIHIDNQSLKGYKFIDLFAGIGGFRLALESFGAKCVYSNEWDKFAQETYHMNFGDTPEGD ITQVDETRIPDHDILCAGFPCQPFSISGKQYGFEDSRGTLFFDVARIVKEKRPKVVFLEN VKNFATHDGGKTISVVKNTMLELGYSFQFRVLNPINYGIPQKRERVYMVCFRNDIERESF VFPQPFKLNRFVENFLLPDNEVRDLIVNRTDLVLNDKVNINYNAPSTIRVGTVGKGGQGE RIYSPKGIAITLSAYGGGVFAKTGGYLINGQTRRLHPRECARIMGFPDSFKLNPNMNQAY KQLGNSVVVDVLQLITQQISDALNHKYSGTHQLEMV >gi|308170055|gb|AEHR01000018.1| GENE 41 48863 - 49564 256 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 6 207 9 218 309 103 32 3e-21 MDKLILETKNLTKTFGKQKAVDSISLKIKENSIYGLLGPNGAGKSTTLKMITGMIHKTSG EIFFEGHEWSRDDLSDIGALIEMPALYENLSARENLKVRTLLLGLPDSRIDEVLEIVSLK DTGKKKSGQFSLGMKQRLGIAIALLNNPKLLILDEPTNGLDPLGIQELRNLIRSFPEKGI TVILSSHILAEVEQTADHIGIINNGKLQYQNIINHDDNLEELFMNVIKSGMGV >gi|308170055|gb|AEHR01000018.1| GENE 42 49568 - 50308 473 246 aa, chain + ## HITS:1 COG:no KEGG:CLD_2969 NR:ns ## KEGG: CLD_2969 # Name: not_defined # Def: antibiotic ABC transporter, permease protein # Organism: C.botulinum_B1 # Pathway: ABC transporters [PATH:cbb02010] # 1 245 1 242 243 164 38.0 3e-39 MISYILAENLKHRGTFLKKLLVIMPITLILLSLFLMPSYFTTNSYNWWYVIIMPATFALI PAMMDRKESRKLNYRAVFPLNINLKKLWVSKIITAFVYISIAAIIHMLGVYIFQFFLGGQ LSPNYGFSTLLFASALLIITNIWQIPLCFFLAKKFGFIASIIMNAVLGLGTGILLSDGAF WIYCPYSWGIRSMIPVMHILPSGVLTEASNPIISSTSLYIPCILSICLFTLLTMISAKWF SKQEVK >gi|308170055|gb|AEHR01000018.1| GENE 43 50308 - 51048 466 246 aa, chain + ## HITS:1 COG:no KEGG:SMU.657 NR:ns ## KEGG: SMU.657 # Name: mutG # Def: putative MutG # Organism: S.mutans # Pathway: ABC transporters [PATH:smu02010] # 1 246 1 248 248 124 33.0 3e-27 MINIIKSEIYKIKGTWLPWIHIVLPIAYSLLFYVASKTTGLKNFEENDISQTYFVLLGAV MPIILSFITSKVVDMEMSAGKFQVLLSTTKSRSKAYIGKLLVLELGFVISLALAIIIFAV LTGYQNTLDWLIEFSLIVISSLSLYMIHLWVSIVLSSGVSIGLGFLETLVALLSMTVIGD SIWYFIPCTWSSRLPAMYIIMRKVSDTSYFYKEFRIWSFVALFVILIFFISSIIWFNKWD GKSISE >gi|308170055|gb|AEHR01000018.1| GENE 44 51081 - 51740 768 219 aa, chain + ## HITS:1 COG:SPy1081 KEGG:ns NR:ns ## COG: SPy1081 COG0745 # Protein_GI_number: 15675069 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 219 1 227 228 161 40.0 1e-39 MSLILAVDDDLDMLELIKNILKKNNHEVDVYQNPLEIDNSKLSKYDLILLDIMMPGIDGI SFCKDIRAKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGTAELLARIEAHLRREKR ERHTSLNLGGIRFDLSSNEVFVGDEKVHLTKSEYQISELLAKRKGQVFSREQIYELIFGF DGIGDASAISEHIKNIRAKFQKYDENPIETVWGIGYKWN >gi|308170055|gb|AEHR01000018.1| GENE 45 51731 - 53110 712 459 aa, chain + ## HITS:1 COG:CAC0317 KEGG:ns NR:ns ## COG: CAC0317 COG0642 # Protein_GI_number: 15893609 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 169 435 203 475 498 105 31.0 1e-22 MELKSKGQSLKNILFKYLLSIALGLAISVLLILAFISASYQFKWIFPANHTESLILEKRI NIATSKNFDKSLLPNNTSYLFLSKDEKVLETNMNKNIQDIAFSYHKGSGYSNANLSFMEI QRSDGYVLVAYNLKPYYKSPWMQKNLPQINILLLILLIIFCLISIVTTTLIWAKKISKEL NPLLEASDEIGKQNLDFQVKKSNIQEFNAILDSLEKMKMGLSESLRTNWREEEKKRNQIS ALSHDIKTPLSIIKGNSELLGETNLTEDQESYLGYIRKNTNRIGKYIETLMLVNKSNQAN ELNFTQIKAKEFVENIEKLAKEFTSTYKLNLLEDINYDDDFLIVDLKNFERAFLNIMSNA EEQSPKNSTIKLIICSKADKLEISILDQGHGFTGEDLLYATDQFYQGDKSRNSKENYGIG LFVAEQIIKMHGGSLVLENRTDKIGAKVSILLPVKNTLI >gi|308170055|gb|AEHR01000018.1| GENE 46 53625 - 55946 1133 773 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809594|ref|ZP_07703451.1| ## NR: gi|309809594|ref|ZP_07703451.1| hypothetical protein HMPREF9215_1218 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9215_1218 [Lactobacillus iners SPIN 2503V10-D] # 1 773 1 773 773 1404 100.0 0 MPEIKYKNYLDHEIHVKFVDGILKHSQNWQWFIEYIEDNYNLVDISSYIEYQKRSNSLIR ILSNFINILEICDFNFQFRTVLLQEIYEISKYYVGATERENCAKKVSSEFSKILFLSVWL TKLQNSGNNSNYIIDNRFMNQRNFHQALNMQEFDYDKDEIILYLEKIKLTDFERIKRNIE DNLNRIVYGLSENFFDMYGARLLSGNCFNFQSLDREASLTWQENTLLDMLQISIRNGEII PIYSNGDSIVPNYKGWTPDLLKQLKKHFNNQISDFVIESVDFLLNRKDPNIKTIESHCKL FLKLISKGEDYEILTSSTYEILTKLFDEGVMNRIEKTEVIKEFYKNLHSITSVNLLVRLS SSFSLRKDQMQSVKDYMENKYRAISYINDIPTLTQYLENTDIARHINQFYYDETKDRFLK LIKDVNDISVANLFYQAMLFLISVNQTNQIVDKRIVKQDMINIQEYWQKNKYQEQVKNLQ EFTYGTQISTEEVEKYNKSIMENPIIVANSTILAKVDDLISVLEETSKHAVIHMVSRITL NNIFPIKDTGINFDRHETDNILKKQVEKIIERYGYKFINVLDVGIYVAAIHERYKNNVYS VIALFKKEKELYALLEEIIGVKLIPFNEQISLGHLTQLFPLLEIEIRQLGKLFGIVPFKE NVDEFMKFKDPSSILRELIEDVYEELDGFESAPDLLFVYHFMYNSNSLNIRNECIHGRDY FEGYMLKFAFKVTMLALYMIRYRINLILDNSSSYNEGLVQKKLRFSVQERMRI >gi|308170055|gb|AEHR01000018.1| GENE 47 56768 - 57007 245 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809619|ref|ZP_07703476.1| ## NR: gi|309809619|ref|ZP_07703476.1| hypothetical protein HMPREF9215_1220 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9215_1220 [Lactobacillus iners SPIN 2503V10-D] # 1 79 7 85 85 145 100.0 8e-34 MLDFGEGPIWTEYFDEEKGRLLTGIEKVDNDKELWDINETIQELFTSYYHFDYNDQGCFF DEEQEKKINTKCLTCLGNL Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:39:16 2011 Seq name: gi|308169985|gb|AEHR01000019.1| Lactobacillus iners SPIN 2503V10-D contig00005, whole genome shotgun sequence Length of sequence - 67281 bp Number of predicted genes - 70, with homology - 70 Number of transcription units - 33, operones - 21 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 30 - 89 4.5 1 1 Op 1 . + CDS 140 - 1087 1044 ## COG0492 Thioredoxin reductase 2 1 Op 2 . + CDS 1115 - 1759 348 ## COG0586 Uncharacterized membrane-associated protein + Term 1784 - 1845 8.5 - Term 1770 - 1833 5.1 3 2 Tu 1 . - CDS 1889 - 2074 268 ## gi|309805299|ref|ZP_07699350.1| hypothetical protein HMPREF9213_0640 - Prom 2094 - 2153 9.5 - Term 2164 - 2208 4.2 4 3 Op 1 3/0.143 - CDS 2307 - 2915 449 ## COG4478 Predicted membrane protein 5 3 Op 2 . - CDS 2915 - 3694 928 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 6 3 Op 3 . - CDS 3697 - 3897 180 ## gi|309805288|ref|ZP_07699339.1| conserved hypothetical protein - Prom 3941 - 4000 2.8 7 4 Op 1 . - CDS 4062 - 4235 176 ## gi|309809678|ref|ZP_07703534.1| conserved domain protein 8 4 Op 2 . - CDS 4242 - 4574 463 ## LCRIS_00432 hypothetical protein - Prom 4598 - 4657 6.8 + Prom 4566 - 4625 8.4 9 5 Op 1 . + CDS 4682 - 6049 1246 ## COG0584 Glycerophosphoryl diester phosphodiesterase 10 5 Op 2 . + CDS 6064 - 6507 565 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 11 5 Op 3 . + CDS 6438 - 7460 993 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 7508 - 7552 12.1 - Term 7494 - 7541 13.6 12 6 Tu 1 . - CDS 7566 - 8540 1003 ## COG1609 Transcriptional regulators - Prom 8685 - 8744 8.2 + Prom 8589 - 8648 4.2 13 7 Op 1 . + CDS 8689 - 8901 169 ## LGAS_0435 proline dipeptidase 14 7 Op 2 . + CDS 8819 - 9796 1180 ## COG0006 Xaa-Pro aminopeptidase + Term 9815 - 9856 -0.8 - Term 9797 - 9850 12.4 15 8 Op 1 . - CDS 9853 - 10182 462 ## FI9785_505 hypothetical protein 16 8 Op 2 . - CDS 10196 - 10633 509 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain - Prom 10662 - 10721 8.3 + Prom 10673 - 10732 8.8 17 9 Tu 1 . + CDS 10758 - 11603 993 ## COG0668 Small-conductance mechanosensitive channel + Term 11683 - 11719 -0.9 - Term 11492 - 11547 -0.5 18 10 Op 1 3/0.143 - CDS 11629 - 12249 416 ## PROTEIN SUPPORTED gi|24114209|ref|NP_708719.1| putative deoxyribonucleotide triphosphate pyrophosphatase 19 10 Op 2 . - CDS 12267 - 13052 919 ## COG0796 Glutamate racemase - Prom 13101 - 13160 7.0 + Prom 13065 - 13124 10.1 20 11 Tu 1 . + CDS 13148 - 13546 404 ## LGAS_0428 hydrocarbon binding protein + Term 13599 - 13647 0.3 - Term 13587 - 13635 7.1 21 12 Op 1 3/0.143 - CDS 13673 - 13984 540 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 14014 - 14073 2.1 22 12 Op 2 . - CDS 14081 - 16441 2887 ## COG1193 Mismatch repair ATPase (MutS family) - Prom 16477 - 16536 3.6 - Term 16510 - 16538 -0.9 23 13 Op 1 7/0.000 - CDS 16549 - 16860 416 ## COG3906 Uncharacterized protein conserved in bacteria 24 13 Op 2 6/0.000 - CDS 16867 - 17298 673 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 25 13 Op 3 4/0.143 - CDS 17298 - 17555 426 ## COG4472 Uncharacterized protein conserved in bacteria 26 13 Op 4 1/0.143 - CDS 17635 - 20268 3202 ## COG0013 Alanyl-tRNA synthetase - Prom 20367 - 20426 6.4 27 14 Op 1 . - CDS 20612 - 21871 1225 ## COG0513 Superfamily II DNA and RNA helicases 28 14 Op 2 . - CDS 21858 - 22814 710 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 29 14 Op 3 . - CDS 22871 - 23980 989 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 30 14 Op 4 . - CDS 23981 - 25429 1395 ## COG0364 Glucose-6-phosphate 1-dehydrogenase - Prom 25461 - 25520 7.4 - Term 25481 - 25519 6.4 31 15 Tu 1 . - CDS 25533 - 25832 399 ## COG1862 Preprotein translocase subunit YajC - Prom 25876 - 25935 4.3 32 16 Op 1 29/0.000 - CDS 25950 - 26915 1286 ## COG2255 Holliday junction resolvasome, helicase subunit 33 16 Op 2 1/0.143 - CDS 26971 - 27555 629 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 34 16 Op 3 6/0.000 - CDS 27577 - 29454 1803 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 35 16 Op 4 . - CDS 29460 - 32024 2534 ## COG0249 Mismatch repair ATPase (MutS family) - Prom 32055 - 32114 6.0 - Term 32058 - 32126 11.4 36 17 Op 1 41/0.000 - CDS 32166 - 33800 1579 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 37 17 Op 2 . - CDS 33826 - 34098 416 ## COG0234 Co-chaperonin GroES (HSP10) - Prom 34167 - 34226 5.9 38 18 Tu 1 . - CDS 34236 - 34865 812 ## COG2344 AT-rich DNA-binding protein - Prom 34930 - 34989 7.9 + Prom 34953 - 35012 12.2 39 19 Tu 1 . + CDS 35052 - 36965 1585 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 36971 - 37013 4.2 - Term 36959 - 37001 3.4 40 20 Op 1 . - CDS 37021 - 37557 570 ## gi|309809648|ref|ZP_07703504.1| hypothetical protein HMPREF9215_0133 41 20 Op 2 . - CDS 37544 - 37774 69 ## gi|315653070|ref|ZP_07905998.1| conserved hypothetical protein - Prom 37861 - 37920 5.0 42 21 Op 1 . - CDS 37938 - 38198 208 ## gi|312872891|ref|ZP_07732953.1| hypothetical protein HMPREF9218_1301 43 21 Op 2 . - CDS 38191 - 39111 734 ## RBAM_034800 hypothetical protein - Prom 39359 - 39418 6.3 44 22 Tu 1 . + CDS 39154 - 39315 161 ## gi|309807421|ref|ZP_07701384.1| hypothetical protein HMPREF9211_0443 + Term 39350 - 39392 4.2 - Term 39338 - 39380 3.4 45 23 Op 1 24/0.000 - CDS 39437 - 42604 3246 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 46 23 Op 2 7/0.000 - CDS 42597 - 43679 1127 ## COG0505 Carbamoylphosphate synthase small subunit 47 23 Op 3 15/0.000 - CDS 43679 - 44956 1720 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 48 23 Op 4 8/0.000 - CDS 44956 - 45897 1058 ## COG0540 Aspartate carbamoyltransferase, catalytic chain - Prom 45943 - 46002 2.7 - Term 45912 - 45949 5.5 49 23 Op 5 . - CDS 46036 - 46233 294 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 50 23 Op 6 . - CDS 46275 - 46577 425 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 51 23 Op 7 . - CDS 46623 - 46967 525 ## COG0167 Dihydroorotate dehydrogenase - Prom 47001 - 47060 2.4 52 24 Op 1 . - CDS 47063 - 47542 545 ## COG0167 Dihydroorotate dehydrogenase 53 24 Op 2 . - CDS 47548 - 48789 1113 ## COG0477 Permeases of the major facilitator superfamily - Prom 48834 - 48893 7.4 + Prom 48858 - 48917 8.4 54 25 Op 1 9/0.000 + CDS 49036 - 49743 781 ## COG0284 Orotidine-5'-phosphate decarboxylase 55 25 Op 2 . + CDS 49745 - 50380 906 ## COG0461 Orotate phosphoribosyltransferase + Prom 50391 - 50450 6.4 56 25 Op 3 . + CDS 50474 - 51124 514 ## COG0406 Fructose-2,6-bisphosphatase 57 26 Tu 1 . + CDS 51236 - 52441 530 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 + Term 52454 - 52492 0.0 - Term 52431 - 52490 13.1 58 27 Op 1 . - CDS 52559 - 53272 509 ## gi|312870708|ref|ZP_07730815.1| putative membrane protein 59 27 Op 2 . - CDS 53312 - 53971 601 ## COG1131 ABC-type multidrug transport system, ATPase component - Prom 54188 - 54247 9.1 - Term 54227 - 54278 8.0 60 28 Op 1 1/0.143 - CDS 54310 - 55605 1251 ## COG0015 Adenylosuccinate lyase 61 28 Op 2 . - CDS 55609 - 56898 1772 ## COG0104 Adenylosuccinate synthase - Prom 56935 - 56994 9.6 + Prom 56946 - 57005 7.1 62 29 Tu 1 . + CDS 57108 - 58082 915 ## COG0516 IMP dehydrogenase/GMP reductase + Term 58129 - 58169 2.5 + Prom 58172 - 58231 7.0 63 30 Op 1 4/0.143 + CDS 58476 - 58994 691 ## COG0286 Type I restriction-modification system methyltransferase subunit 64 30 Op 2 2/0.143 + CDS 58957 - 60057 371 ## COG0286 Type I restriction-modification system methyltransferase subunit 65 30 Op 3 1/0.143 + CDS 60057 - 61049 639 ## COG3943 Virulence protein 66 30 Op 4 4/0.143 + CDS 61046 - 62272 1289 ## COG0732 Restriction endonuclease S subunits + Prom 62299 - 62358 4.2 67 31 Op 1 11/0.000 + CDS 62404 - 62898 218 ## COG0732 Restriction endonuclease S subunits + Prom 62904 - 62963 1.8 68 31 Op 2 . + CDS 63041 - 66160 1656 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases + Term 66168 - 66225 10.2 - Term 66305 - 66347 5.2 69 32 Tu 1 . - CDS 66432 - 66692 383 ## COG0157 Nicotinate-nucleotide pyrophosphorylase - Prom 66871 - 66930 4.8 - Term 66851 - 66899 17.1 70 33 Tu 1 . - CDS 66934 - 67281 344 ## gi|309809671|ref|ZP_07703527.1| LPXTG-motif cell wall anchor domain protein Predicted protein(s) >gi|308169985|gb|AEHR01000019.1| GENE 1 140 - 1087 1044 315 aa, chain + ## HITS:1 COG:lin2489 KEGG:ns NR:ns ## COG: lin2489 COG0492 # Protein_GI_number: 16801551 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Listeria innocua # 4 308 8 321 331 219 37.0 4e-57 MEYYDLAIVGAGPVGLFATKFANLHGLKTITFEALADCGGQINRLFPNKKIKDIPGYNSI IGHQLVDKLKEGIDSKIITNYKVQEIIQKDSEIIIDNNYQAKTLLITSGMGAFTPKKLPL PIDSSCEKHIHYFVKNADHFQDKNVAIFGGGDSALDWAMQMADKCKIVIIHRRDQFRGME STLKFLHQHSNVSFLTPYLPQKIKCKNNQLNILLKKLGTKEMEEIKCDEAVIAFGFKSDN LLLKKWGLNLETGHVKVNSQMQSNIENIYAAGDACIYDGRVPMMALGFGEAQIAIMSIMN HLFPEKKLTIHLSSH >gi|308169985|gb|AEHR01000019.1| GENE 2 1115 - 1759 348 214 aa, chain + ## HITS:1 COG:lin0035 KEGG:ns NR:ns ## COG: lin0035 COG0586 # Protein_GI_number: 16799114 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Listeria innocua # 3 213 7 217 219 196 51.0 2e-50 MNLLDFILNIDKHLITIVNSCGDWTYLILFLIVFVETGLVVFPFLPGDSLIFATIAMAAS PKYHLDLIICYIIFIIAAICGDSINYELGKWSELQSNKFKWFNKLINPQKKKAAEDFFEK HGGITIVIGRFIPIIRTFVPFVSGASKMHYRTFVIYNIVGAFLWVSLFSICGFLFGNIPA VQHHFSLLIIAIIAISILPIIILSIKNKLTKNSK >gi|308169985|gb|AEHR01000019.1| GENE 3 1889 - 2074 268 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805299|ref|ZP_07699350.1| ## NR: gi|309805299|ref|ZP_07699350.1| hypothetical protein HMPREF9213_0640 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0640 [Lactobacillus iners LactinV 09V1-c] # 1 61 37 97 97 121 98.0 1e-26 MGRELMGLASCDDDRKAIINFTIVAAKYFNDQVTVEKINDSLKEHGQAPLTEEEKKFYGV K >gi|308169985|gb|AEHR01000019.1| GENE 4 2307 - 2915 449 202 aa, chain - ## HITS:1 COG:L157321 KEGG:ns NR:ns ## COG: L157321 COG4478 # Protein_GI_number: 15673126 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 16 193 15 190 205 88 36.0 9e-18 MKNKLSIVIYNFGAAILLSLWGTILLSWPILLVMMIAQRTNKLIHLSLFGALKNYSQLMS YLINPVSDKLQMSDLQSSLNGLIHFKDCKNLFSIALMLGCIWLFIFLYFEIWKKKKIVSL PHSYTICLLLLPLIVVPFSMGNFTNLFILFHRAIFTNNNWLFNPDTDPIILILTEEFFAA CSATFLLIYELYFVRLLIKKGR >gi|308169985|gb|AEHR01000019.1| GENE 5 2915 - 3694 928 259 aa, chain - ## HITS:1 COG:BH3428 KEGG:ns NR:ns ## COG: BH3428 COG0647 # Protein_GI_number: 15615990 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Bacillus halodurans # 3 258 2 254 259 223 42.0 3e-58 MNKQYGCYLIDLDGTIYRGEKTIQSGVDFVNRLNEKKIPYLFLTNNTTRTPEMIVAKLAS HGVITDVDHVYTPIMATVSYLLEHNPGTDAIPVYIIGQIGLWKGLLAEDRIVLDNNNPKY VIVGMDTDLTYKKICIATNAIRKGAEFIGTNSDHVLPSGDKLLPGNGSQCAMIAVASDQK PFFIGKPSAVIVNYALKKIKKNIEESLIVGDNYETDIMAGINCRMDSLLTLTGVTTKKQL AGEKIQPTYVLNNLDEWQL >gi|308169985|gb|AEHR01000019.1| GENE 6 3697 - 3897 180 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805288|ref|ZP_07699339.1| ## NR: gi|309805288|ref|ZP_07699339.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] # 1 66 84 149 149 89 100.0 7e-17 MGDNTIKEIVLGRKYKHYYKYFGNQNNYFKEKKVKKIKFKSHKNYSVKISYKHNRQKKFV IRKRKG >gi|308169985|gb|AEHR01000019.1| GENE 7 4062 - 4235 176 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809678|ref|ZP_07703534.1| ## NR: gi|309809678|ref|ZP_07703534.1| conserved domain protein [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners SPIN 2503V10-D] # 1 57 1 57 57 99 100.0 7e-20 MDYTNSCNNVPAKTYHAKADVRFKDKQLLINGRTYQIIANEKNALDLDLMQKNMILF >gi|308169985|gb|AEHR01000019.1| GENE 8 4242 - 4574 463 110 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00432 NR:ns ## KEGG: LCRIS_00432 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 6 110 2 106 106 146 75.0 2e-34 MSAKYQQLNLIEEVTRNDGSKYYEISNINQNGIAEMAADNGKIKEVRILKLNIARTKQLQ IYEKYINETYDLQTLLLESDWRNPKWIEWEKPDGKIKDAYLAILKANKVG >gi|308169985|gb|AEHR01000019.1| GENE 9 4682 - 6049 1246 455 aa, chain + ## HITS:1 COG:lin0625_2 KEGG:ns NR:ns ## COG: lin0625_2 COG0584 # Protein_GI_number: 16799700 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Listeria innocua # 28 252 1 220 243 82 27.0 1e-15 MSKCKHLYFTIVFLGIFLLESGFLVIGHRGNPNKFPEETIQSDNSAFNDGADFVELDLHL SKDNILVISHDRNLSRITGSSVIVSQNNFSYLHTLKCKNGEPIMSLNELFEYYQHKPRTK FLIETKKTSHNTPKNMEQILANVIKKYHMENRVMFHSFSAPSLETLSKLLPKIPRIFIVG SLKRINFEVLSYVNGINISADLITQNPDLIQQLHKLHKKVYVWAEMDESPKLWNWLINND IDAVVTNFPATAYRYNMAKKKTHKFSINKDAIFYSRASERVFENPYFKTKTNKKIHFSQN IHVSNAVETSSGTYYQIGAKQFIDADFVNFNLPVNCIYPYWNLPIITKYNQMTTTYVHPK YTANVEKFLKPNTKYKIYGISQNQKWLLTTSGWVPAKEILYYGIFPNTAEFNYYRKLPHN YQQINIALVPDVAFNRQYVVNFWKQCKILNNIKDF >gi|308169985|gb|AEHR01000019.1| GENE 10 6064 - 6507 565 147 aa, chain + ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 3 144 4 145 469 160 52.0 9e-40 MDLDYKKLALEKKEAILADLKELIAIDSSEDLTNTSEEYPVGPGPVTALKKFLSFAQRDG FDTQNFANYAGRINYGNGDSRVGIIGHMDVVPAGDGWKTNPFEMVIKDGKIFGRGSADDK GPSLACYYGLLILKEHGFVPSKKLILF >gi|308169985|gb|AEHR01000019.1| GENE 11 6438 - 7460 993 340 aa, chain + ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 17 340 143 469 469 280 46.0 2e-75 MLLWFTNFKRTWICTIKKIDFVLGTNEETNWVGIDYYLKHEPKPDMVFSPDAEFPIINGE QGIVTLKLTFKEENRKGTNFLISFESGIAANVIPQTAKATIKDNSSIDFETEYQQFLTEN ELTGEIEHQNGVINFTLTGHGAHASAPETGRNAATYLAKFLVKYDFAGKADNYLSFLASV EHNDFHGEKLGIYHQDDLMGELASSPSIFKYNENEAYLLNNVRYPQGTNPEIMVNNINER YGNFISTTVKGKAEEPHYVPGDDPIVQTLLKVYEKQTGLKGHEVVIGGGTYGRLFEHGVA FGAQPEGAPLVMHQPNEYMKVEDLINSIAIYAEAIYELCK >gi|308169985|gb|AEHR01000019.1| GENE 12 7566 - 8540 1003 324 aa, chain - ## HITS:1 COG:lin1640 KEGG:ns NR:ns ## COG: lin1640 COG1609 # Protein_GI_number: 16800708 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 5 316 2 317 335 283 50.0 3e-76 MQKQDVTIYDVAREANVSMATVSRVVNGNTNVRKETRDKVLAVIDRLHYQPNAVAQGLAS KKTTTVGVVVPGLTNLHFAELAKGIDDIATMYKYNIILTSIENNVIDNGNVIQSILNKQV DGVIYMCNTMSPKATEAFHRANIPVVLAGTIIDNDHFGSVAIDYKEADRKALELLWKDGK ENIALIVDDKEAYINRGCRIKSYRQFLADHGIKSEYIYDNILTFEDGYNLFAKLYSDGID AVVTTKDITAAGIVNAALDSQVSIPEQFEIISATSTNIAKIVRPQLTSIQQPLYDIGAVA MRMLTKLMKNEDVAEKISYYHIRF >gi|308169985|gb|AEHR01000019.1| GENE 13 8689 - 8901 169 70 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0435 NR:ns ## KEGG: LGAS_0435 # Name: not_defined # Def: proline dipeptidase # Organism: L.gasseri # Pathway: not_defined # 1 64 1 64 368 104 70.0 9e-22 MNLDKLNEWLIKNNCDVAYISDPLSINYFTGFNMDPNERIFALVAFKDKPAFIFCTRIKC RRSKTLSLER >gi|308169985|gb|AEHR01000019.1| GENE 14 8819 - 9796 1180 325 aa, chain + ## HITS:1 COG:L96847 KEGG:ns NR:ns ## COG: L96847 COG0006 # Protein_GI_number: 15673631 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Lactococcus lactis # 10 318 54 359 362 312 51.0 6e-85 MHSKTSLLSFFAPELNVEEAKHSAWNGDVYGYLDEQNPWQKIANLVSERIGRPQKIAIEK SFVSIARLEALKSVFTDADFSTDVSKLIGELRIIKTEEEVKQLQAAGAEADYAFEVGFNA LRNGVTERYVAGQIEYRLKLDKGVMHTSFETICQAGTNAANPHLGPTLNTIKPNQLVLFD LGTMHNGYASDSSRTVAYGEPSAKEKEIYEIDREAQQAAIDAARPGMTAGELDAVARDII TKAGYGEYFIHRLGHGIGMSVHELPQIMSGNDFILQEGMCFSIEPGIYIPNVGGVRIEDC GVLTNEGFKTFTKTDKQLRYIPVKE >gi|308169985|gb|AEHR01000019.1| GENE 15 9853 - 10182 462 109 aa, chain - ## HITS:1 COG:no KEGG:FI9785_505 NR:ns ## KEGG: FI9785_505 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 109 1 108 111 70 41.0 3e-11 MGKKGSFLVGGILGFGLGILASAFLPDDVSSNIKGKITDNDMFKTLKEKYDQRTEDLKEQ MTEIPSNINDDSELKDFDDIIIDNTQSSSEKVDDNQHISDDILDLKNEE >gi|308169985|gb|AEHR01000019.1| GENE 16 10196 - 10633 509 145 aa, chain - ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 3 140 1 134 135 65 35.0 5e-11 MVMSYSEIAILLIAVAIIVLVVFMIPCLVKLYKLMKSLIQVSDNLNTTISDLNSKTSLLL NQTEDLLKTSNELMADVNDKVKRLDPLVQAIDDVSESISDINNSSKKAMSNISKFSAKKV GLGIVSSILSHIIVKKHEKNNKKHF >gi|308169985|gb|AEHR01000019.1| GENE 17 10758 - 11603 993 281 aa, chain + ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 19 273 6 262 281 148 36.0 9e-36 MYILNNLLTPFKIQPTQAHLLDWSQLAHESVGKFLTIAFTSLIYLAIWTIGKKFINKYLI QNPHFQQKVSSRKKTFSQLLVNIFQYTLLFFYIYGILNILGLPVGTLIASAGVVSLALGM GAQGFVSDLVNGITILSESQYDVGDLVKISGFTGTVISLGIRITKLRASDGTIIYIPNRS ISIVENLTRGGIGVDISLHLDANNDFAIITKSINDANEILRPKFSRKLKKDPSILGIVSQ YKNGFTYNIHFQVVPGYQVEIKNAYFSEYIKQLQANKVIFN >gi|308169985|gb|AEHR01000019.1| GENE 18 11629 - 12249 416 206 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|24114209|ref|NP_708719.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Shigella flexneri 2a str. 301] # 1 197 1 194 197 164 48 9e-40 MDTLLFATTNLNKAKEVEKALKLANFPLKVITNRDLENVPEVIETGTTFLQNATLKAHKL AQFSQLPTLADDSGLMVDKLNGAPGVYSARYSGEDHNDARNNAKLLAELGGVPEQQRTAV FHTTMVLSWPDRYDCDLVSQGEILGRILTMPKGEGNFGYDPLFYVAEKGKTFAEMTVEEK NTISHRGIALRKLLAELPMWWKKMSK >gi|308169985|gb|AEHR01000019.1| GENE 19 12267 - 13052 919 261 aa, chain - ## HITS:1 COG:L0120 KEGG:ns NR:ns ## COG: L0120 COG0796 # Protein_GI_number: 15673264 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Lactococcus lactis # 1 261 1 263 271 208 41.0 1e-53 MDNRPIGILDSGLGGLTVLKKVIQRLPNESTIFIGDQAHMPYGDRTVEDIINLTRASVKF LLTKNVKVIIFGCNTATAAAMSVIQQEIPMQIIGVIQSGALAASKITQTNQVAVIATNAT VNSHSYVKEIAFRNAQIQVTELGEPKLAPLVEANPSDKIKKVVVAQCLAPLKHVQYDTLI LGCTHYPLLIKEIAEFIGKDKKIVDPADQVAQYTFNVLKRDNLLAEKGGKHEYYTTGDPI KFMKIAQKWMHDPTLKAQHVE >gi|308169985|gb|AEHR01000019.1| GENE 20 13148 - 13546 404 132 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0428 NR:ns ## KEGG: LGAS_0428 # Name: not_defined # Def: hydrocarbon binding protein # Organism: L.gasseri # Pathway: not_defined # 1 132 1 131 131 156 61.0 3e-37 MQDNSEQLYFINSLYRDCILSEILGKDASDILYWAGKRVSRRYDLSDIDDLPEFFRIAQF GQLKLISNRRKTVVFELSGQNVTDRIESSITEFTIESGIIAECIARENKTNAEAVANIDA KRKVVEIVVQYD >gi|308169985|gb|AEHR01000019.1| GENE 21 13673 - 13984 540 103 aa, chain - ## HITS:1 COG:lin1196 KEGG:ns NR:ns ## COG: lin1196 COG0526 # Protein_GI_number: 16800265 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 102 1 103 103 118 54.0 3e-27 MFEELTDKTYEVETSEGLVVIDFWAPWCGPCRMQSPVIDELSEEMQDVKFAKVDIDQNPD TPKALGIMAIPTILIKKDGKLVNRFTGFTPKEKLKAAIEEYID >gi|308169985|gb|AEHR01000019.1| GENE 22 14081 - 16441 2887 786 aa, chain - ## HITS:1 COG:BH3106 KEGG:ns NR:ns ## COG: BH3106 COG1193 # Protein_GI_number: 15615668 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 4 786 3 785 785 578 41.0 1e-164 MNSKIIEKLEFKRITQMLSDLAVTEPAKKLAQELLPVSDYKTVLNNMAQTTALVNIQRVK GPLPLTDFVDVNASIKRLHINADLNAQELGNILLILSIVRDCKNFLSAIQDRELDLHAID DLIDSLLPLDDLFNALNRSLESDGTVLDTASAELNRIRHNLKANELDIKTKMEAYLKNSS EYLTESIITIRDGRYVIPVKQTYKNKFGGVVHDQSASGQTMFVEPEAVLSINNRQQQLVY EEKREIHKILKQLSLMAQEYIDEIAADARTLISLDFLSAKSLLAKKLKATEPIFTENNEV DLHGARHPLLDPNKVVTNDIELGKNFDTMLITGPNTGGKTIILKTVGILQLMAQSGLYIT AHEGSKVGIFREIYADIGDEQSIDQSLSTFSSHMDQIIKIMANVNQDDLVLLDELGAGTD PEEGACLAIAILDYMQARLPKIMITTHYPELKLYGYNRLRTSNASMEFDVKKMHPTYKLR IGIPGQSNAFAIAEQLGMDNTVIIAGRSLMSEQNNDINKMILRLTQQTKDAEELTNQVHK KLKLCIALKNKLQAGLDWYNQQVDHQMQLTMAKVDKIVSDKRDEAEKIIKQLKQQQHDNG QFKINKVIEAKNAFNAIENETQQLAHNKILKKAKKKHDIQPGDAVKVSSYGQTGVVTKKI SDNQFEVQIGIIKVKVSGTDLDKIVSKKAKTKEMVVRSGRGIRTTQAKAELDLRGKRYED AMVELDRYIDSALLNGLTVVTIIHGVGTGAIRLGVGKYLRQSKHVQSFAYAPANEGGTGA TIVHLK >gi|308169985|gb|AEHR01000019.1| GENE 23 16549 - 16860 416 103 aa, chain - ## HITS:1 COG:BS_yrzB KEGG:ns NR:ns ## COG: BS_yrzB COG3906 # Protein_GI_number: 16079792 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 11 98 5 90 93 73 52.0 1e-13 MGEKISNKNTENQITLIDDKGNEELFEILFTFTSDDYNKSYVLLYPAAVGEDEEVEVQAF SYDADEDGAVLGSNLHEITSDEEWDMVQGVLNTFLSDERLSGE >gi|308169985|gb|AEHR01000019.1| GENE 24 16867 - 17298 673 143 aa, chain - ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 136 1 135 139 154 57.0 4e-38 MRLLGLDVGSKTVGVAVSDALGITAQEVETIPIDESKYNFGMRRVKQLVREYEVSGFVVG LPKNMDGTCGESAQRCLDYGERLKAKFKIPVYYSDERLTTIQAKRILVEEAGISDRVARK KIIDQMAAVLILQNFLEAKRKDN >gi|308169985|gb|AEHR01000019.1| GENE 25 17298 - 17555 426 85 aa, chain - ## HITS:1 COG:BH1268 KEGG:ns NR:ns ## COG: BH1268 COG4472 # Protein_GI_number: 15613831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 85 1 86 90 105 67.0 1e-23 MSSLDKTMHFDFNQNKGKNVYDTLQDVYVALEEKGYSPINQIVGYLLSGDPAYIPRHNDA RNLILKHERDEIIEELVKSYLGKDK >gi|308169985|gb|AEHR01000019.1| GENE 26 17635 - 20268 3202 877 aa, chain - ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 873 1 870 879 946 56.0 0 MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN HRITSSQKSIRTNDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGL DPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQLEDNFWDIGEGPCGPDSEIFYDRGQEN NDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVSVIQ DAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALPSNS GRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIKNEE DRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGLAVD KEEFDAEMKAQKDRARKARGNLQSMGSQDITLMNIKDESVFEYHQLQEDHAKLLDIVVDD KLVDQVNGEQATLIFDKTPFYAERGGQVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFV ELVLPMQKGEEYVLKVDEQRRRGLKHNHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRF DFTSLEPMTKREIATVERLVNEKIWAEIPVKTTITDQETGLKMGALALFGEKYHEKVRVV QINDFSIEFCGGTHCENTDQIGMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKE IQDEVKATKVDDIQNKVVALEDALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIA KIVDVDGMNDLRELSDNWKTQNLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKI AAPIFGGGGGGRPNMAQAGGKNPAGLAKALETVLNEL >gi|308169985|gb|AEHR01000019.1| GENE 27 20612 - 21871 1225 419 aa, chain - ## HITS:1 COG:lin1488 KEGG:ns NR:ns ## COG: lin1488 COG0513 # Protein_GI_number: 16800556 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 1 419 1 418 435 366 47.0 1e-101 MQMNNIFQTDQLKPNIKKGLEKINFLKPTPVQQQVLPLLLAHQNVVVQAVTGSGKTHAYL IPIINDLDPELLCTQAVITAPSRELASQLYKVARQLRDAAELNISIEYLGGGNDRTRQLE KASNNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMVRLGT NVTIGAFSATIPVKLEQFLNKYMEHPEFVVIDNPSVISPTVANDLIDVGSKNKKDILYTL LTMGQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYV IASDLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGRNNLYGHAITLIHEEEMQQIAQ LEKLGIHFEFKDLKNNELVERTHYHRRDNRRTRAQKLDNRLVGMVKKAKVKKKPGYKKK >gi|308169985|gb|AEHR01000019.1| GENE 28 21858 - 22814 710 318 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 1 310 1 310 311 278 46 7e-74 MNTFDEIFKKINDYSTIIIHRHQHPDPDALGSQAGLARSLKLAFPEKKILCAGGPEGDLA WINKMDEVKDEDYQGALVITVDTANTPRISDDRFRMGDFLIKMDHHPDVDPYGDLRYVEP EKPAAAEIIFDFIKAEKLPLTKEVAYPIYAGMVGDTGRFMYAETTPATLKAAYELAATGI DITEIAMNISTVTLEQAKLQNLVIDLLHVDPCGAAYAVVTQQQLHKLGINEDQASATIGT PGRIKGIIAWNIFVEKSDGTYRVHYRSKGPIINQLAEQHNGGGHALASGANAVDMKEVEQ IFAEVVEVTKKYNENANE >gi|308169985|gb|AEHR01000019.1| GENE 29 22871 - 23980 989 369 aa, chain - ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 8 368 8 364 364 291 44.0 2e-78 MDELLPCNNFSRKIIHLDMDAFYASVEIHDDPTIANKAVIIGQDPRQSNGHGVVATANYL ARKYGVHSAMTTMQALRLVPAEKLVFIKPNFEKYRRVSDKIHQLMYEITDAIESVALDEA YMDVTTNKMGNFSALELATNLQKNIYRETGLTSSFGVSYNKYLAKMGSEYAKPFGRTVIL PDDALEFIASQKIEKFPGIGVKMQEQLHELQIYTGADLQKQNIKFLLDRFNKAGYIIAQQ AKGIDLRPVISKRPRKSLGLEHTFDVNIYDYDKLLTWLRNYSCELAQKLRTLNLQTRTVV IKLRTADFITITRRSALAVATNDAMTIYQHAKSSLEDEIDCVSGGVRLLGLSATDFEQKS YETLSLDLF >gi|308169985|gb|AEHR01000019.1| GENE 30 23981 - 25429 1395 482 aa, chain - ## HITS:1 COG:SP1243 KEGG:ns NR:ns ## COG: SP1243 COG0364 # Protein_GI_number: 15901104 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 7 482 6 483 495 421 43.0 1e-117 MKNIPNVMIIFGGSGDLAHRKLYPALFNLYRKGLIADDFAVIATARRPWSHDFLRGQVKN AVNETCEQIDAADLDRFATHFYYQSHDVTHVDHYIALKQLAQKLDEKYDCHGNRIFYMAM APSFFGTIATHINDQKLLGTGFNRLIVEKPFGRDYETAEKLNQEIGASFDEKSVYRIDHY LGKEMIQNILPLRFANPLLKNIWNAEYIKNIQVTLAEKIGVGTRGGYYDNSGALRDMVQN HIFQIITLLAMPAPKNLTSDAIHEAKQRLLQGLQIPSYDEVSKSVVRGQYLASEHEPAYI NVDQVAPDSCTETYVAGKVKFTTGPLAGVPIYFRTGKKMLEKKSRIDIVLKAGSDLYEKA NENVITIEIDPVSKIVLRLNGKEIVGTGLRIEDLSYAFNAEEMHQVPDGYERLLNDVFMA DRTNFTHWMELAQYWRYIDAIESAWRKQNSMAIKPDQYLPNAFGPNAADNIFENADSYWI YR >gi|308169985|gb|AEHR01000019.1| GENE 31 25533 - 25832 399 99 aa, chain - ## HITS:1 COG:BS_yrbF KEGG:ns NR:ns ## COG: BS_yrbF COG1862 # Protein_GI_number: 16079823 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Bacillus subtilis # 2 75 12 85 89 69 41.0 2e-12 MVVIMFGFMYFAMIRPQKKQQQVRMKMLSELKKGDKVILLDGMHCKIDTINGDDTIVVDA DGIFLTFSRSAIRQILPDDVEANKPVTTNENVETKDEEK >gi|308169985|gb|AEHR01000019.1| GENE 32 25950 - 26915 1286 321 aa, chain - ## HITS:1 COG:SPy0038 KEGG:ns NR:ns ## COG: SPy0038 COG2255 # Protein_GI_number: 15674280 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pyogenes M1 GAS # 2 315 13 326 332 411 64.0 1e-115 MEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLYGPPGLGKTTMAFV IANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKTVEEILYSAMEDFY VDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHMQYYSEDELQQIIE RSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETSISLLTTKHALAKL EVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVYEPYLLQKGFISRT PRGRVANAKAYVQLGISLDTR >gi|308169985|gb|AEHR01000019.1| GENE 33 26971 - 27555 629 194 aa, chain - ## HITS:1 COG:L0266 KEGG:ns NR:ns ## COG: L0266 COG0632 # Protein_GI_number: 15674189 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Lactococcus lactis # 1 193 1 197 197 176 51.0 2e-44 MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTPNPYQFIENKQYCIFVEQVVRENAITLYGF ATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKVASQ IILDLKGKLDVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEKIKPKLEKLPNQSA DLYIKEALKLLLKQ >gi|308169985|gb|AEHR01000019.1| GENE 34 27577 - 29454 1803 625 aa, chain - ## HITS:1 COG:SPy2121 KEGG:ns NR:ns ## COG: SPy2121 COG0323 # Protein_GI_number: 15675871 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pyogenes M1 GAS # 1 625 1 646 660 406 37.0 1e-113 MTKIHKLSSELTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIVVQDN GSGIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNTGDVNG IHAIFEDSNKVKQEAIASPQGTKIVVKDLFYNTPARLKYLKSERTEIMKIVDIVNRLALG YPQVSFELTNQQKQLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISRAD ETRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNVHP TKQEVRLSKESELARLIVRTIDQVLGATEHEIASLDNATESKQTKLDQLEFNLNEAVVDT SRIPVEFSMPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDANVQAQTALSPFSA SSLSSEVTTSSEQILVNKLPQLQCLGQMHEYLLATADNDLYIVDQVAADNRLAFDKLLLQ MQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLWLEN CDQIQIKAVIDLILAHINAPLDKIRIELAKKNVATKHIRRKSLNSLEMVEMLTSLSNSSN PYHDPFGKIIIAKISENDLRKLFQK >gi|308169985|gb|AEHR01000019.1| GENE 35 29460 - 32024 2534 854 aa, chain - ## HITS:1 COG:BS_mutS KEGG:ns NR:ns ## COG: BS_mutS COG0249 # Protein_GI_number: 16078767 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus subtilis # 6 850 5 857 858 830 51.0 0 MAEKITPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKP IPMAGVPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQGMVKRGIIQLVTPGTVINDNPD QAKESNYLTSLCSNSQGWGLTYCDLSTGESYATHLTSWEMIVNELLSLQTRELVYGKTLT SDKQIFLKKAGITLSQPVKLSKEHAEISYVTQQLHNQLEIAATKQLLAYLLATQKRSLAH LQVTQSYEPNQYLQMSHIVQTNLELIKSAKTGKKMGSLFWLLDKTSTAMGGRLLKSWIER PLISLSEIKSRQLVVTALFDDYFSREKIIKQLQGVYDLERLTGRVALGSANARELLQLAD SLAVVPEIINILANSKNEVLNNFAQKIDPLKGIHDLIVKTIVENPPLSTKEGGIIKAGVS SQLDRYRDAMMNGKKWLADMANSEREKTGINNLRVGYNKVFGYYIEVTNSYKDKVPLDRY MRKQTLTNAERYITVELKEHEALILEAQDYSTDLEYELFTNLREDIKKYIPALQKLAKQL SSLDVLSTFSLLSEQNNYVCPQFSQDSSAINIVNGRHPVVEKVMSDEEYIPNDVKMDEQT NIFLITGPNMSGKSTYMRQLALIIIMAQMGCFIPADSAVLPIFDKIFTRIGAGDDLISGK STFMVEMSEANIALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT HYHELTDLDQELAHLKNIHVGATQENGHLIFLHKILPGAADRSYGIHVAQLAGLPTKVLR EATHMLKQLEKNSDNQVAFSDEQLDLFGSSDQHKMSDEEQDVLTQIKNLYLNEMTPLQVM QLVANWQDELKNKE >gi|308169985|gb|AEHR01000019.1| GENE 36 32166 - 33800 1579 544 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 543 3 541 547 612 57 1e-174 MAKDIKFSEDARSSLLRGVDKLANTVKTTLGPKGRNVVLEKSYGAPDITNDGVTIAKNIE LKDHFENLGAKLVAEVAQKTNDIAGDGTTTATVLAQAIVREGMKNVTAGANPVGIRRGIE IATKAAVAELHKISHEVSSKAEIAQVASVSSASTEVGELIADAMERVGHDGVITIEESKG IDTELSVVEGMQFDRGYLSQYMVTDNDKMEADLENPYILITDKKISNIQDILPLLQEIVQ QGKSLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVIS SDLGLELKDTKIEQLGTAGRITITKDSTTIVEGAGSKDAISERTEQIKKQIADTTSDFDR EKLQERLAKLSGGVAVIKVGAATETELKEKKYRIEDALNSTRAAVEEGYVAGGGTALVDV MKAIDNNVKADTDDAKTGVKIVLAALSAPVRQIAENAGKDGSVILDHLLHADLEIGYNAA TDKWENMVTAGIIDPTKVTRSALQNAASIAALLLTTEAVVADEPEESKAQCPCPTNPGVP GMGM >gi|308169985|gb|AEHR01000019.1| GENE 37 33826 - 34098 416 90 aa, chain - ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 90 5 94 94 89 54.0 1e-18 MGDRVIVKVKDEEEKNVGGIVLASNAKEKPQTGEVVAVGQGARDANGNLIPMTVAKGTEV FFDKYSGTNLKYEGQEYLVLHEKDILAYIK >gi|308169985|gb|AEHR01000019.1| GENE 38 34236 - 34865 812 209 aa, chain - ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 2 207 4 209 215 244 57.0 1e-64 MDESNIPGATAKRLPLYYRYLIFLDDAGKKRVSSAELAEAVQVDSVSIRRDFSYFGALGK PGYGYEVKGLLSFLKKILNQDILTNVALVGVGHMGHALLNYNFKRTNNIRISAAFDINKK ITGRILCGVPVYDINEMHQQLQDQQINIAILCVPQDVAQKTADEMITAGIKGIMNFTPIR LIVPHGVRVQNVDLATELQTLNYFLNSRK >gi|308169985|gb|AEHR01000019.1| GENE 39 35052 - 36965 1585 637 aa, chain + ## HITS:1 COG:L73239 KEGG:ns NR:ns ## COG: L73239 COG0488 # Protein_GI_number: 15673044 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 636 1 635 635 526 45.0 1e-149 MIIAQAKNLEQHFGINQIFNDVDFSISDNARIGLVGPNGAGKTTLLKIMTGQQEPSGGNF TINKDIIVGYIAQENGLNENNSIWEEMLTVFASLVDKSHKIEQLQIDISNDPENQDLLKQ YDQLSYSFEQAGGFTYPAEIKSVLNGFKFFKDSWHKKISTLSGGEKTRLAFVKLLLKKPP LLLLDEPTNHLDLDTLEWLEGFLKNYKGAILTVSHDQYFLDNLTNEIFELNFGKLTTFKG NYTQYVQERELINRQQEAAFEKQQEQIKRDEEFIQKNIVRASTTKRAQSRQKRLDKIERI TLPQHKQKVRINFNAERQSGKEVLILKDVTIGYPDKIMVKNINFQVNKGDRIAIIGPNGI GKSTLLKTLMHKLEPKTGTIKYGAGLDIGYYDQELQSLDFKQTVLDTIWNRHKTMPESEV RSILASFLFNAKDIEKTVAQLSGGQRARLTLTVLSMEKDNFLLMDEPTNHLDIEAKEVLE QALDNYDGTLLFVSHDRYFINELANKIIVINNGTAKLYNGNYHYYLDELTKQNAIEASKQ EEIIANEDNSGKLSYAEQKERNSQKRKLERDVQNAEKKIAELEEKEKDIQLKMADPIISA SFEKLGPLQEELSRIQSELEKANETWEEAMLNLDEFE >gi|308169985|gb|AEHR01000019.1| GENE 40 37021 - 37557 570 178 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809648|ref|ZP_07703504.1| ## NR: gi|309809648|ref|ZP_07703504.1| hypothetical protein HMPREF9215_0133 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9215_0133 [Lactobacillus iners SPIN 2503V10-D] # 1 178 1 178 178 313 100.0 4e-84 MNKNKDVTVELVHIENWLNKHENVLDKDDLQILNILNKPSFSEFQDNLGYKLNHRKLEDI IIDNSLSDEDKVSYIVALKDNVEGINQFILEGYLLFLGKRYEIKLATIVAYVLLEKYGIS KLLTQFIQFLILNTDFDGSVGIINPLRNTISDDIYPIWKYGNTYFSYLFLAKVMKYDL >gi|308169985|gb|AEHR01000019.1| GENE 41 37544 - 37774 69 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653070|ref|ZP_07905998.1| ## NR: gi|315653070|ref|ZP_07905998.1| conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 76 142 217 217 138 98.0 1e-31 MINFGPLLYEGNLNIHNLSLSDSDKKILLYYYYCISDWSNVLYLSLSLKCKLKQNINVED CNIEQILGVWLLNEQK >gi|308169985|gb|AEHR01000019.1| GENE 42 37938 - 38198 208 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312872891|ref|ZP_07732953.1| ## NR: gi|312872891|ref|ZP_07732953.1| hypothetical protein HMPREF9218_1301 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_1301 [Lactobacillus iners LEAF 2062A-h1] # 1 86 1 86 217 146 98.0 5e-34 MNRYEHIIIKKLNESEIDEELLNSITNMIDFYFVSKVANSSIEKLIFNIIYSIVGGQDNI RAVINTNPFKLDKFIMWANFLITFFN >gi|308169985|gb|AEHR01000019.1| GENE 43 38191 - 39111 734 306 aa, chain - ## HITS:1 COG:no KEGG:RBAM_034800 NR:ns ## KEGG: RBAM_034800 # Name: not_defined # Def: hypothetical protein # Organism: B.amyloliquefaciens # Pathway: not_defined # 16 303 16 310 319 137 31.0 5e-31 MNVFMLLSYYRKEKMESIKLYKKSAKWLFDNLEYFDPRNESKIADNKYKIKAFMELLFVQ NMFYPQKLFSSSEQHIINNFIINLINNMSFYNYAVRDPDMISVLPTIIEFLLNQNQQVYN IEKIEQLIEYSHGLSIKKTAFRRLDLAYSFKKAGLKNKFDSLNAIYPLTTLGKNGNNFYY ADIDVYSITHTIFYMTDMGRKATPEISTLDNLNLLLRLIQLYILEDNMDILSELLICIKF LHYDLSKENIKFILDEAVAVLKKHQKQDGLMLGPGVSLSKRDTRERIFRLNYHTTMVSLG ALYLYE >gi|308169985|gb|AEHR01000019.1| GENE 44 39154 - 39315 161 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309807421|ref|ZP_07701384.1| ## NR: gi|309807421|ref|ZP_07701384.1| hypothetical protein HMPREF9211_0443 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9211_0443 [Lactobacillus iners LactinV 01V1-a] # 1 49 1 49 49 80 93.0 5e-14 MNDILKNNINVLSCLDDSKYIFIWENFIFTQPIDPIDNGHSLKKKKFSFKQII >gi|308169985|gb|AEHR01000019.1| GENE 45 39437 - 42604 3246 1055 aa, chain - ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1054 1 1058 1058 1322 62.0 0 MPKRKDIHKIMVIGSGPIIIGQAAEFDYSGTQACLALREEGYEVILVNSNPATIMTDTEI ADKVYLEPLTVEALTRIIYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKL KSIEQAEDREEFKKLCKQLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGG ICNNRKELATVVARGLDLSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPV GIHTGDSIVFSPSQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN PRVSRSSALASKATGYPIAKMAAKIAVGMTLDEIINPVTGTTYAEFEPALDYVVCKIPRW PFDKFAQADRKLGTQMKATGEVMAIGRTAEEALHKAIRSLDIDELDLFSPEAHNADDNLL EKKLAYAQDDRLFYLAEAIRRNYSMKDIHELTKINYYFLDIVAHLVEMEKTIQDHPQDIA TLREAKKYGFSDLTIAHLWNITENEVRQFRKQNHIIPVYKMVDTCAAEFESQTPYFYSTY DEENESTDFDSKSVIVLGSGPIRIGQGVEFDYATVHCVKALQKLGYKAIVINSNPETVST DFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGAQTAINLAAGLKEHGVKILGTDVED INRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDAAIKIGYPVLVRPSYVLGGKAMEIV YNEAELEEYLDNNAYITNDHPILVDDYLDGKECDVDAISDGVDILIPGIMEHVEHAGVHS GDSMAVYPPQSFLDDIQQKICEVTRKLAIALKCQGIMNIQFIVRDNDVYVIEVNPRASRT VPFLSKITGIEMVQVATKIIMGKSLAEQGYKPGLAPASQMINVKAPVFSFNKLPGVDPYL GPEMKSTGEVMGSDYTYAKALYKAFAGAKINLTANMSILLATDLKEKDRIVAIAKKFNQT GARVFVLPEVAEILQDIGVRFNLVESEATLMQMLKEKKFNLVINNMSRDSEPESFGFKLR QMAISQNISLITALDTVDAILLAISNDTLTTKPLS >gi|308169985|gb|AEHR01000019.1| GENE 46 42597 - 43679 1127 360 aa, chain - ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 2 352 4 353 360 448 58.0 1e-126 MRYLILEDGTFYAGEGFGANIETIGEVVFTTGMTGYQEAISDQSYANQILVFTNPLIGNY GITLSDYESLAPQIKGVICHQLARKPDNWRMQDTLPNFLKHINVPAISGIDTRQLVKKIR MHGTLRGAICDSIDHLDEVVEKLKNSNVTANIISQVSTKNSYPIPGSKRNIVVVDFGIKH SILKELTKRGCNCIVKPYNVSAAEIMNLNPDGVLLSNGPGDPEEMTDAAKMVREIEKHYP LMGICMGHQIFALANGAKTYKMKFGHRGFNHPVKEIATGNIAFTSQNHGYAVDPESVDKE NLFVTHVEINDGTVEGLRHKKYDAFSVQFHPDATPGPHDAVSLFDDFIQLIDQRKERNNA >gi|308169985|gb|AEHR01000019.1| GENE 47 43679 - 44956 1720 425 aa, chain - ## HITS:1 COG:BH2538 KEGG:ns NR:ns ## COG: BH2538 COG0044 # Protein_GI_number: 15615101 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Bacillus halodurans # 1 425 1 427 428 411 50.0 1e-114 MSWLIKGGLVFYNDILSLTDILISEGKIAAIGHNLTADHEIDATGLLVTPGLVDLHVHYR DPGLTYKETIATGSKAAAHGGFTTVGAMPNVKPVPNTAALLSKMVVENQKKGVVHILQYA PLTKDENSDEILDYQALKEAGAFALSNDGFGVQSAETMYKAMQKAAVNNLIVAAHAQDDS LFNKGVINEGDKAEKFNLPAISELAETTQIARDLLLAAKTGVHYHVCHVSTKTSLDLIRI AKKRGINVTCEAAPHHILLSQDDILTDDPYYKMNPPLRSKDDQMALIEGLLDGTVDFIAT DHAPHAAYEKEGSMLNAAFGITGSETCFSMLYTKLVKTGIVRLEQLLTWLTVRPADLFNL KHCGRLVVGEPADIAIFDLNQPHQLQISEYQSKGKNTPFTGNIVYGTTAYTIVDGNIVYQ RKEVA >gi|308169985|gb|AEHR01000019.1| GENE 48 44956 - 45897 1058 313 aa, chain - ## HITS:1 COG:SPy0832 KEGG:ns NR:ns ## COG: SPy0832 COG0540 # Protein_GI_number: 15674868 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pyogenes M1 GAS # 4 307 8 307 311 335 52.0 9e-92 MQPVKLSHFTTVEDLTTEQVFNLIKRAEAFKNGAKPTPLTKPVYVTNMFFENSSRTHTSF EMAERKLGLTVIPFDPAHSSVKKGETLYDTSLIMNAIGIDLEVIRHSKNRYYDSLINLSE HQHLDMGIINAGDGSGQHPSQCMLDMMTIYEHFKHFDNLKVVIVGDIVNSRVARSDMEIL KKLGAEIYFSGPSCWYDHQFDQYGKYLPLDSLLEKMDVVMLLRVQHERHMEEDKDFSATD YHQKYGIDQKRYECLKENAMIMHPGPINHDVELAGNLVEATKCYFFRQMQNGVFMRMAMI EAVMYGRKLGGLA >gi|308169985|gb|AEHR01000019.1| GENE 49 46036 - 46233 294 65 aa, chain - ## HITS:1 COG:BS_pyrR KEGG:ns NR:ns ## COG: BS_pyrR COG2065 # Protein_GI_number: 16078611 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Bacillus subtilis # 1 64 118 181 181 81 64.0 4e-16 MDALIHMGRPNSISLAVLVDRGHRELPIRADYVGKNIPTALNEKVSVNVEEIDNKDSIEL EKLES >gi|308169985|gb|AEHR01000019.1| GENE 50 46275 - 46577 425 100 aa, chain - ## HITS:1 COG:lin1954 KEGG:ns NR:ns ## COG: lin1954 COG2065 # Protein_GI_number: 16801020 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Listeria innocua # 5 97 7 100 183 100 58.0 9e-22 MIKELFDKIAIKRALTRISYEIIEKNKGTENLVLFGIKTRGVYLAKRIAKRIEELEGVKI PVGVLDITLYRDDRQDVSLSNEAVVNSTECNTDVNKKMSF >gi|308169985|gb|AEHR01000019.1| GENE 51 46623 - 46967 525 114 aa, chain - ## HITS:1 COG:BH2534 KEGG:ns NR:ns ## COG: BH2534 COG0167 # Protein_GI_number: 15615097 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Bacillus halodurans # 1 110 190 299 305 123 55.0 9e-29 MINTLLGLGIDIKTHKATLGNGFGGWSGSAIKPVAVRMVAQVHQAVKLPIIGMGGIETAE DIVEFMLAGASAVAVGTAHFKDGLAIPHLVADLETLLNELKVDDINELIGQYKF >gi|308169985|gb|AEHR01000019.1| GENE 52 47063 - 47542 545 159 aa, chain - ## HITS:1 COG:L182555 KEGG:ns NR:ns ## COG: L182555 COG0167 # Protein_GI_number: 15673328 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 2 158 5 160 311 155 48.0 3e-38 MSKLNVKLPGLNLKNPIMPASGTFGFGDVPQAKKYDLNEMGAMVFKTTTLHARIGNPQPQ IAVMKNGVLNSVGLTNPGVDKVISDKIAPFKEQYPQLPLIASVGGSQISDYITISKKLSD SGLLNALEINVSCPNVAAGGMHLGTDPVVVEKLTSEIKK >gi|308169985|gb|AEHR01000019.1| GENE 53 47548 - 48789 1113 413 aa, chain - ## HITS:1 COG:SPy1340 KEGG:ns NR:ns ## COG: SPy1340 COG0477 # Protein_GI_number: 15675278 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 4 403 1 398 406 313 46.0 4e-85 MNNISKYTQELTRDQKLVISSTASGFALENMDVLFLSFAMSSMIKDLHLSGGAAGLISSI TTLGMLLGGIIFGILGDKIGRVKTFSHTVVIFAIATGLMAFTNDINHIYMLRFLAGIGAG GEYGVGIALIAENFSHDRIGKMTSIAAIGGQIGAVMAAVVAAVIIPTLGWHKLFLVGVLP VVLTYFIRKHLHESKQFIEAKKHAKGSFFFEVIKKMFSTPRLMWQSIGLTIMMIVQISGY FGLMNWLPTIVQKQMHLSVSGSSLWMVSTIIGMSIGMMTFGTIFDYFGPRRAFTIFLLGS GVMVYMLILAHNMFALIIIGAIVGFFSNGMFGGYGAVISCLYPTEIRSTANNIIVNVGRA IGGFSSVVIGILMDYYNLMVVMGFLSALYLLSFIIMVSLPGLKELGLKKVKKA >gi|308169985|gb|AEHR01000019.1| GENE 54 49036 - 49743 781 235 aa, chain + ## HITS:1 COG:L181692 KEGG:ns NR:ns ## COG: L181692 COG0284 # Protein_GI_number: 15673327 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Lactococcus lactis # 2 235 4 236 237 211 46.0 1e-54 MNKPVIVALDVEDKTSLDRLLNKLGDPKDITVKIGMELFYQFGTEPVKELVAKGYSIFLD LKLHDIPNTVYNGMKQIAKLGIQYTTIHALGGSEMIKKAHEGLIAGTPTGKSLPKLLAVT ELTSISDDSLANEQNCKLTMKDQVISLAKMAKKYGADGVICSPLEVEKLRTEVGEDFLYV TPGIRPATDQKFDQSRIATPAQAKAFGSSAIVVGRPITLAKDPKAAYQKIVKEFN >gi|308169985|gb|AEHR01000019.1| GENE 55 49745 - 50380 906 211 aa, chain + ## HITS:1 COG:L80411 KEGG:ns NR:ns ## COG: L80411 COG0461 # Protein_GI_number: 15673050 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Lactococcus lactis # 3 206 4 207 209 207 50.0 1e-53 MYTKEIIQSLIQNKIVTISPDKPFTYASGMLSPIYTDFRLTISYPKLWNMICDDLATLIK EKYPQVTVIGGVATAGIPHAAIVAQKLGLPMIYVRPKPKDHGKGRQIEGLFTAQDKIVLI DDLITTGGSVINAVKAAQKSGADVIGVSSIFTYYLPDAKDNFAKINIPFAPLLSYPELLK QEKETGHVTDKEYMLLKNWHDDPWAWGKQFN >gi|308169985|gb|AEHR01000019.1| GENE 56 50474 - 51124 514 216 aa, chain + ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 3 180 6 185 224 126 38.0 3e-29 MKTIYLVRHGQTFINRYDKMQGWCDTPLTNQGIKEAENTGVVLKDIPFDIAFSSDLKRAC DTCDYIISENCNRHELQHISSPFFREQFYGYFEGMNSDEAYRMIGGPHGYPTREKLLSAI DLDTVKDYMKEADPYHDAENANEYWQRLNQGFSLLNQLDDVKNILLVTHGFTIRSIVNRF AKGKYNLLHGPQNGSITIMKINDKEIKITDYNKLEL >gi|308169985|gb|AEHR01000019.1| GENE 57 51236 - 52441 530 401 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 13 384 44 413 425 208 36 6e-53 MDELAKLAEANQMEVVGRSWQNLETIVTGTYFGLGKINEIKHLAKELHATVIIINDELTP TQIRNLEKMTKLSILDRTELILEIFSNRVRTKQAKLQVQLARLQYELPRLHPSENRLDQQ RGSGGGFNNRGAGETKLELNRRTIQQQISNIKKDLKKINQQEIIKATQRNNSFLPQVALV GYTNSGKSTTLNNLLNEYSKSADKKQVFTKDMLFATLDTHVRRIDLENKLSFIISDTVGF VSNLPHNLIESFKATLQEVRDADLIINVVDASDPNILQMIQTTTKVLDELQIGDVPIITA FNKVDKTDRSYPQIEGNGNILYSAKDPESIRLLAKLIQKKIFSNLQVVELFLPLQMGDKL NYLHTHGQVIEEKYQDNGIYIKIKICKKIANKFAKYNYKSK >gi|308169985|gb|AEHR01000019.1| GENE 58 52559 - 53272 509 237 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312870708|ref|ZP_07730815.1| ## NR: gi|312870708|ref|ZP_07730815.1| putative membrane protein [Lactobacillus iners LEAF 3008A-a] putative membrane protein [Lactobacillus iners LEAF 3008A-a] # 1 237 15 251 251 370 97.0 1e-101 MFLFPIVVELGILIYENVVKKEKANISMYNGLWYVATVAIIVFVTVYQIIKNYYLGHDSL WQIFPYSKEGLEFIDIFFYILGTIIYGCTYQYAQATASNQKFYISMYIPEKLVSLIAFYL LIMAMCVLFKNVQCPKIGEGCIIISSLIIIISQISIFWKLNQKVVNHFLLGVSDACETKH LIYINTLPYVFFGVTKRQIATLINTSYLLNGCLIILCLLFILISIKFRRMNYIDLVG >gi|308169985|gb|AEHR01000019.1| GENE 59 53312 - 53971 601 219 aa, chain - ## HITS:1 COG:SPy1286 KEGG:ns NR:ns ## COG: SPy1286 COG1131 # Protein_GI_number: 15675239 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 3 198 7 211 232 141 39.0 1e-33 MLLKNITVKYGRKVALDNISLTLRNDGKIVGILGDNGSGKTTLVNLILKNINKFKGQREI EGSFSYMPDRYFLYESMTIKESIDLFKSVYSDFDEQRMYKILQKFSISPQLKLHDCSKGM HEQVHLALVFSRNTDFYVLDEPLSATDPIKRRYFMDIIQNYRRKNSTVLMVTHLIRDLGD MLEDVIFIKDGHILSHNSRAEILAVDKTLEDAYIRRIGQ >gi|308169985|gb|AEHR01000019.1| GENE 60 54310 - 55605 1251 431 aa, chain - ## HITS:1 COG:SPy0036 KEGG:ns NR:ns ## COG: SPy0036 COG0015 # Protein_GI_number: 15674278 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Streptococcus pyogenes M1 GAS # 1 430 1 430 430 590 68.0 1e-168 MLDRYTRPEMGKIWTDENRYAAWLKVEIAATNAWSELGEVPVADAQKIAKKASFTAERVA EIEAITHHDVVAFTRAVSESLGEERKWVHFGLTSTDVVDTAQGVLLKEANDILRSDLAHL KNTIAKKALKYKDTVMMGRTHGVHAEPTTFGLKLGRWYAEIIRDIDRFEHAAAGVESGKI SGAVGTFANVPPEVETSVLHQLGLNQQPITSQVLPRDLHAEYLAMLALIATSIENWATEI RSLQRSEIHEVEEHFRAGQKGSSAMPHKRNPIGSENLCGMARVIRGHMLTAYENVSLWHE RDISHSSAERIILPDTTIAIDYMLNRFDKILENLDVFPETMLKNMDRTYGLIYSQRLLLK LIDEAGLSREKAYDMVQKLTARSWNEQIQFRQLVDESEITKYLSKSDIDDAFDYHYHLKH VDDIFKKLGIL >gi|308169985|gb|AEHR01000019.1| GENE 61 55609 - 56898 1772 429 aa, chain - ## HITS:1 COG:SP0019 KEGG:ns NR:ns ## COG: SP0019 COG0104 # Protein_GI_number: 15899967 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 427 1 427 428 601 66.0 1e-172 MTVVAVVGSQWGDEGKGKMTDYLSQSADMTVRSNGGNNAGHTIAFGGKTFKMRLIPSGIF EAKKETVIGNGVVINPEVLLDEIKYLEDNGINTDKLAISNRAHIVMPYDILQDVYQEEAK GANKVGTTKNGIGPTYMDKASRIGIRMCDLLEKDTFEEKLRFNLNEKNALFVNVYGKEAL KFEDIFEKYWKFGQELKKYVTDTSVIVNDAIDNDDKVLFEGAQGVMLDIDQGTYPFVTSS STVTGGIATGIGIGPSKVDTVIGICKAYTTRVGAGPFPTELLDETGNYIRETGHEYGTVT GRPRRVGWFDSVALRHSKRVAGIDALSLNLLDVFSGLKTVKIAVAYELDGQKIDYYPASL KELERCKPIYEELPGWDEDITKVTKLEDLPENARHFLSRVSELVGVPLVTVSVGPDREQT IVLKNPWEM >gi|308169985|gb|AEHR01000019.1| GENE 62 57108 - 58082 915 324 aa, chain + ## HITS:1 COG:SA1172 KEGG:ns NR:ns ## COG: SA1172 COG0516 # Protein_GI_number: 15926918 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Staphylococcus aureus N315 # 1 324 1 324 325 497 71.0 1e-140 MEAFDYDDIQLVPNKCIIKSRKEADTSIKFGKRTFKLPVVPANMESVINEPLAVWLAEND YYYVMHRFQPEKRADFIKMMHDKGLFASISVGIKDEEYKFIDQLANEKLVPEYITIDVAH GHSDYVIKMIKYIKEKLPESFLTAGNIATPEAVRELENAGADATKVGIGPGRACITKLKT GFGTGGWQLAALRMCSKAARKPLIADGGIRHNGDIAKSVRFGASMVMIGSLFAGHLESPG NIITIDNKTYKQYWGSASAVQKGAYNNVEGKQLLVPYRGSIKDTLKEMQEDLQSAISYAG GKDLHSIRVVDYVIVKSSIMNGDK >gi|308169985|gb|AEHR01000019.1| GENE 63 58476 - 58994 691 172 aa, chain + ## HITS:1 COG:XF2728 KEGG:ns NR:ns ## COG: XF2728 COG0286 # Protein_GI_number: 15839317 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Xylella fastidiosa 9a5c # 2 172 1 166 525 191 56.0 7e-49 MVDTKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLTNYINHGEIE AGNTDFDFAQMSDEEAEEAREGLVEEKGFFILPSELFVNIKKKSNEDMEWAKAHLNEKLE SVFRHIEESSQGSEAEGDFAGLFADFDVNSNKLGATVAKKNEKTRKAIKWCG >gi|308169985|gb|AEHR01000019.1| GENE 64 58957 - 60057 371 366 aa, chain + ## HITS:1 COG:XF2728 KEGG:ns NR:ns ## COG: XF2728 COG0286 # Protein_GI_number: 15839317 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Xylella fastidiosa 9a5c # 2 364 156 522 525 510 65.0 1e-144 MKKLVKLLNGVADMNLGSVQDHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLT RLGTVGKTEVNKVYDPACGSGSLLLKSLKVLGKEGVRNGFYGQEINITTYNLCRINMFLH DVEFDKFDVACEDTLTSPQHWDDEPFELIVSNPPYSIKWDGDANPLLINDPRFAPAGVLA PKSKADLAFIMHSLAWLASNGTAAIVCFPGIMYRGGAEKKIRQYLVDNNFIDCIIQLPSN LFFGTPIATCIMVIKKNKIDNRTLFIDASNECVKVTNNNKLTPENIDRIVDIFTKREEIE HIAHLASYDEVKENDFNLSVSTYVEAEDTREKIDIVKLNAEIKEIVAREQVLRDEIDKII AEIEVQ >gi|308169985|gb|AEHR01000019.1| GENE 65 60057 - 61049 639 330 aa, chain + ## HITS:1 COG:STM3755 KEGG:ns NR:ns ## COG: STM3755 COG3943 # Protein_GI_number: 16767039 # Func_class: R General function prediction only # Function: Virulence protein # Organism: Salmonella typhimurium LT2 # 6 311 13 322 345 214 37.0 1e-55 MSNEFQFLIYKTAEENVSVNAFIQNESIWITANQMAILFGKSESTIRKHINNVFDEGELN RENNTQKVRVDGVKQPVAFYNLDTIISVGYRVNSHKATKFRIWATSVLKEYMLKGFAMDD ERLKQGKAAFGKDYFKELLERVRSIRASERRIWQQITDIFAECSIDYDKNAQITHDFYSM IQNKFHYAITGQTGAEIVHSHADRTKEHMGLTTWKNAPDGRILKSDVVIAKNYLEEKQIR QLERAVTGYFDYIEDLIERENTFTMEEFVASVNEFLAFRRYDILHDKGKISSKMAKEKAI TEYMEFNKTQKITSDFDKAVNKMLKAGEEE >gi|308169985|gb|AEHR01000019.1| GENE 66 61046 - 62272 1289 408 aa, chain + ## HITS:1 COG:HP0790 KEGG:ns NR:ns ## COG: HP0790 COG0732 # Protein_GI_number: 15645409 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Helicobacter pylori 26695 # 1 381 1 419 431 128 28.0 3e-29 MSRLDELIQELCPNGVEYKELGEICEITTGKLNANEKIDDGLYPFFTCDKLPFRINKYAF NTSAILISGNGSQVGHLNSYEGKFNAYQRTYVLYEFKFVEKQYLLHYMRSYLKPYIILNC KKGSVPYITLPMLENFKIPIPPLPIQREIVRILDSFTELTAELTAELTARKKQYEFYRDE LLSFGEIIKGGSTQSSKLCEIALIYDGTHKTPNYKNSGIPFISVENINDIYGSKKFISKE DYDLYKITPQINDLFMTRIGSVGKCAIVTKNVDLAYYVSLALIRPNNKIIDTGYLKYYIE SVSGTKELSKRTLHNAVPIKINKEDIGKIKITYPSLDIQKKIASTLDNFDAICSDLNIGL PAEIEARQKQYEYYRDALLTYAATGKIIPRQTDRQTDRQTDRQTSMMR >gi|308169985|gb|AEHR01000019.1| GENE 67 62404 - 62898 218 164 aa, chain + ## HITS:1 COG:jhp0726 KEGG:ns NR:ns ## COG: jhp0726 COG0732 # Protein_GI_number: 15611793 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Helicobacter pylori J99 # 1 162 285 446 454 147 45.0 1e-35 MYTHFGIYATEPLKYISEDVAKKSKIAVKNDIVMAVTSENVEDVCKCTAWLGNENIAVSG HTAIIHHNQNAKYLSYYFHTAMFFAQKKRLAHGTKVIEVTPNALNDIIIPLPSLAEQKRI VGILDRFDDFCNDISTGLPAEIEARKKQYEYYRDKLLNFKKIEK >gi|308169985|gb|AEHR01000019.1| GENE 68 63041 - 66160 1656 1039 aa, chain + ## HITS:1 COG:XF2725 KEGG:ns NR:ns ## COG: XF2725 COG0610 # Protein_GI_number: 15839314 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 5 999 54 1006 1007 1076 57.0 0 MLCEQGYEYLSIHSEKDLIQNLRTKLEELNNYTFTDTEWHQFFHSAVANPNEHIVEKTRK IQEDNVQVLKRDDGSSKNITLIDKENIHNNRLQVINQYVMGKKDGASYDNRYDVTVLVNG LPLVHIELKRRGVAIREAFNQINRYQRDSFWAGCGLYEYVQIFVISNGTNTKYYSNSTRF NAIKDVNAAASAKKGKTSNSFEFTSFWADANNRVIPDLIDFTKTFFAKHAILNILTKYCI FTSENMLMVMRPYQITATERIINRIEIANNYKKYGSIEGGGYIWHTTGSGKTLTSFKTAR QASYLPFIDKVLFVVDRKDLDYQTMKEYDRFEKGAANSNTSTAVLKKQLEDPTVRIIITT IQKLATFIKKNPGHDVYQKHVVIIFDECHRSQFGDMHTAIVKNFKKYHLFGFTGTPIFSV NAARAKNPEFFTTAQTFGDQLHTYTIVDAINDKNVLPFRVDYIKTMDEDEDIDDEMVWDI NREKAMMAPQRIKLVTKYILEHFDQKTYRGDKTYIYNTLTNISQVASGKNGAVEEIKQKQ RVSGFNSIFAVASVPMAKLYYEEFKKQMAKDPTKKLRIATIFSYGANEAEYDEGSSGILD EENSEDTSALDQSSRDFLEAAIKDYNEMFHTNYSTDSDKFQNYYKDVSLRMKNKELDLLI VVNMFLTGFDATTLNTLWVDKNLKMHGLIQAFSRTNRILNSIKTFGNIVCFRNLQKRVDT AISLFGDKNAGGIVLMKGFKDYYYGYEGIDGKQMPGYADMMEELKEKFPLSEPQIVGEQN QKDFISLFGAILRMRNLLSSFDEFVGKELITEYDLRDYLSRYQDLHDEWKRKREQGESTD IIDDIVFEVELIKQIEINIDYILMLVKKYHDTHCEDNEMLITITKAIDASPELRSKKELI ENFIAGINDVEDVMKEWHDYVAEKREEELVQIIKEENLKEPETRKFLENAFRDGEIKTAG TDIDKLMPPVSRFGGRNRAVKKQGVIDKLKLFFEKFFGVGGSFTTEKPKFFNYADAMTQQ SVLMVAEDSATHGTKKDAE >gi|308169985|gb|AEHR01000019.1| GENE 69 66432 - 66692 383 86 aa, chain - ## HITS:1 COG:CAC1023 KEGG:ns NR:ns ## COG: CAC1023 COG0157 # Protein_GI_number: 15894310 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinate-nucleotide pyrophosphorylase # Organism: Clostridium acetobutylicum # 6 86 187 267 279 80 53.0 5e-16 MTYYKIKKYEVEVETLEMVKEAIHGQADIIMLDNMSHEAMAEALKWIDGRAIVEASGNFT LDNISEHKDLPFDYISSGEITHSGDV >gi|308169985|gb|AEHR01000019.1| GENE 70 66934 - 67281 344 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809671|ref|ZP_07703527.1| ## NR: gi|309809671|ref|ZP_07703527.1| LPXTG-motif cell wall anchor domain protein [Lactobacillus iners SPIN 2503V10-D] LPXTG-motif cell wall anchor domain protein [Lactobacillus iners SPIN 2503V10-D] # 1 115 1 115 115 177 99.0 2e-43 DKKPTSKTVKVVGVIYRHGDPLVNEKPMLNYQTENPDYTVPNGEDPLGIHQTSQQKQTTD NLSQLEANQRVRAASRKKVLPNTGSHSSQTWGGWILTLGGLITLLAGKKRKKEDE Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:40:37 2011 Seq name: gi|308169975|gb|AEHR01000020.1| Lactobacillus iners SPIN 2503V10-D contig00014, whole genome shotgun sequence Length of sequence - 7347 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 2, operones - 2 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 21 - 61 2.6 1 1 Op 1 12/0.000 - CDS 240 - 1169 477 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 2 1 Op 2 26/0.000 - CDS 1187 - 2080 883 ## COG0130 Pseudouridine synthase 3 1 Op 3 32/0.000 - CDS 2141 - 2500 611 ## COG0858 Ribosome-binding factor A 4 1 Op 4 . - CDS 2534 - 4720 2471 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) - Prom 4791 - 4850 4.8 5 2 Op 1 . - CDS 4902 - 5168 374 ## LGAS_0814 translation initiation factor IF-2 6 2 Op 2 8/0.000 - CDS 5173 - 5478 181 ## PROTEIN SUPPORTED gi|15895077|ref|NP_348426.1| hypothetical protein CAC1801 7 2 Op 3 22/0.000 - CDS 5480 - 5755 398 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 8 2 Op 4 32/0.000 - CDS 5801 - 6889 676 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 9 2 Op 5 . - CDS 6909 - 7346 351 ## COG0779 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|308169975|gb|AEHR01000020.1| GENE 1 240 - 1169 477 309 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 21 309 20 315 317 188 34 1e-47 METILLDNPIDNRKICSNAVVVLGFFDGVHIAHQKIIFKARKIADDKQVPLVVLTFDKHP KELYLDDKNFKYIDTLSEKTAKMRKFNVDLLVVMTFNESTCRLKPADFIDNVILMFNPSV VVVGYDYTYGPKKIANIQTLLTYSKGKFDLVIEPEATFKGVKIGSTEIKEAISHGNVKLA ADLLGCPYSMSGVVVHGFHRGHMLGFPTANLCINCKKILPCNGVYATQTLIKGKLYNSMT SVGYNDTFNNNKKTIETYIFDFCEDIYGEKIILYWYEFIRDNIKFNDINSLINQLNIDKT NIQRYFDKK >gi|308169975|gb|AEHR01000020.1| GENE 2 1187 - 2080 883 297 aa, chain - ## HITS:1 COG:SP1212 KEGG:ns NR:ns ## COG: SP1212 COG0130 # Protein_GI_number: 15901075 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 290 1 288 292 233 42.0 4e-61 MLNGIIVLNKPRGVTSSDCVYKLRKLLKIKKIGHAGTLDPEVNGVLPIAVGQATKLIEKM HEKDKKYIGVGLLGFATDSYDVTGKKIAEKKLITPFSDEEIQSGMKKLVGDISQMPPIYS AVKVNGKRLYEYARENIEVQRPIRNVTVKSYNLVNTSTYDCEKQQQTFDFSVTCSKGTYV RSLVNDLGTILDVPAVMVKLTRIASSGYNIADAVTLEDISRQIDQPQFWLQPIDSFFDNV EHFVLNSEQYDRVRNGAALKINASSNEVALVYSGKIKAIYEKKLNIYKPQLMLLQND >gi|308169975|gb|AEHR01000020.1| GENE 3 2141 - 2500 611 119 aa, chain - ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 3 114 6 117 118 99 42.0 1e-21 MKHRIGRVEGEILRELTKILRKEISDPRLREISITAVECTNDFSYATIYYSLLTDNSVRE EEVSQGLEKAKGLMRHLLSNNLTLFKVPELIFKRDNSVAYGSKIDQLIKQVQEEQDKKR >gi|308169975|gb|AEHR01000020.1| GENE 4 2534 - 4720 2471 728 aa, chain - ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 142 728 196 782 782 738 65.0 0 MPVEGAEAVRARVKVAKKVAGPKIIKLSPARQKADNETKNDQVKHSNAKRDFRPRQTKAT KSMDISSVISDSPVPPEENRKLRNKEYGKTGRKKQRDDDADFERSEQSDKARRRKNRKVK GQQQVDLIKKQPTQRKDRPLPEILVFEEGMNAQDLGKLLHREPAEIVKKLFMLGIMTNQN QSLSKDTIELLAAEYGIESKEKVHEDISDIDNLYEHEMEVSKKSQNLVKRPPVVTIMGHV DHGKTTLLDRLRNTNVSAHEAGGITQKIGAYQVKLDDRLITFLDTPGHAAFSNMRARGAE VTDIVVLVVAADDGVMPQTVEAIDHAKSAGVPIIVAVNKIDKPGANPDHVMEQLMKYGLV PEDWGGDTIFVKISAKSGENVDDLLQMILLQADMMELQADPNQKAIGTVIEARLSKGRGP VADVLVQQGTLNIGDPIVIGDTFGRVRVMTNDKGRRVKKATPSTPVEITGLSDVPEAADK LVVFEDEKTARSVGEQRARNSLEKQRENTQHVTLDNLFDTMKKENMKEVGIVLKADVQGS TEALQQSLEKIDVEGVRVNIIHAGVGAINESDVTLASASNAFIIGFNVRPTATARSQADN EGLDIRLYNIIYKAIDDVEAAMKGMLEPTYEEKVVGSLTVRETWKVSKVGTIAGALVDSG YITKDSGVRVIRDGIVKYDGKVASLKRFKDDVKEVKQGFECGITIENFNDIKIDDQLEAY EMQEVPVK >gi|308169975|gb|AEHR01000020.1| GENE 5 4902 - 5168 374 88 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0814 NR:ns ## KEGG: LGAS_0814 # Name: infB # Def: translation initiation factor IF-2 # Organism: L.gasseri # Pathway: not_defined # 1 83 2 95 882 75 48.0 6e-13 MTRIRLYELAKELGIENKVIVEKARELGFDVKSHMSSLTDDQINKIRELYKNKSDKKRPN KSKIKVSVGALRRTNGNEDNNKKKKRLI >gi|308169975|gb|AEHR01000020.1| GENE 6 5173 - 5478 181 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15895077|ref|NP_348426.1| hypothetical protein CAC1801 [Clostridium acetobutylicum ATCC 824] # 1 99 1 100 102 74 36 3e-13 MNNKALNMLGLAQKAGKMVGGYDATNIAILNKKAILVFIASDISNNTKEKVLFVCQKNNI NVCRQFSTAELSHIMGKNRKILAVTDSGFAKAIMKKINEGE >gi|308169975|gb|AEHR01000020.1| GENE 7 5480 - 5755 398 91 aa, chain - ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 87 8 94 108 86 51.0 1e-17 MRKDLITNTMMPKKELVRIVVDKEKNIFVDPTGKKAGRGAYVSLEPEKIQQAKKRRVLEN SLGIKISDEFYDELYAYVEHQRARKELFGDK >gi|308169975|gb|AEHR01000020.1| GENE 8 5801 - 6889 676 362 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 344 9 347 537 265 42 1e-70 MSKELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQA VKTVVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLRE AERAHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKV LVTKVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSS DPNIDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEA NDDKSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQVEFVDEDSSANGEVES AD >gi|308169975|gb|AEHR01000020.1| GENE 9 6909 - 7346 351 145 aa, chain - ## HITS:1 COG:BS_ylxS KEGG:ns NR:ns ## COG: BS_ylxS COG0779 # Protein_GI_number: 16078722 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 145 15 156 156 117 44.0 6e-27 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP DPYILELSSPGVERPIKTEADWCKAKDDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI KIKTQQQKITIPRNMIANIRFAIKF Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:41:08 2011 Seq name: gi|308169884|gb|AEHR01000021.1| Lactobacillus iners SPIN 2503V10-D contig00029, whole genome shotgun sequence Length of sequence - 93034 bp Number of predicted genes - 92, with homology - 89 Number of transcription units - 37, operones - 26 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 140 - 1555 1356 ## COG0531 Amino acid transporters - Prom 1658 - 1717 15.4 + Prom 1585 - 1644 12.4 2 2 Op 1 36/0.000 + CDS 1750 - 2451 207 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 3 2 Op 2 . + CDS 2461 - 4902 1526 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 4903 - 4959 3.0 - Term 4890 - 4942 12.3 4 3 Op 1 6/0.000 - CDS 4954 - 7239 1937 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) 5 3 Op 2 7/0.000 - CDS 7232 - 7471 367 ## COG0236 Acyl carrier protein 6 3 Op 3 . - CDS 7517 - 7741 192 ## COG1696 Predicted membrane protein involved in D-alanine export - Term 7749 - 7781 1.0 7 3 Op 4 6/0.000 - CDS 7791 - 8735 845 ## COG1696 Predicted membrane protein involved in D-alanine export 8 3 Op 5 7/0.000 - CDS 8732 - 9088 437 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 9 3 Op 6 . - CDS 9096 - 10250 1480 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 10 3 Op 7 . - CDS 10269 - 10424 74 ## gi|259500728|ref|ZP_05743630.1| conserved hypothetical protein 11 3 Op 8 . - CDS 10487 - 10783 306 ## LJ1785 hypothetical protein 12 3 Op 9 . - CDS 10800 - 11948 1224 ## FI9785_1737 hypothetical protein - Prom 11998 - 12057 7.6 + Prom 12008 - 12067 8.0 13 4 Op 1 3/0.000 + CDS 12097 - 12588 401 ## COG0517 FOG: CBS domain + Prom 12594 - 12653 7.9 14 4 Op 2 . + CDS 12774 - 13934 1400 ## COG0475 Kef-type K+ transport systems, membrane components + Term 13938 - 13985 13.1 - Term 13926 - 13973 13.1 15 5 Op 1 . - CDS 13975 - 14622 484 ## LGAS_1838 metal-dependent membrane protease - Prom 14642 - 14701 4.8 16 5 Op 2 . - CDS 14713 - 15951 1244 ## COG2252 Permeases 17 5 Op 3 3/0.000 - CDS 15973 - 16638 899 ## COG1428 Deoxynucleoside kinases 18 5 Op 4 . - CDS 16651 - 17295 664 ## COG1428 Deoxynucleoside kinases - Prom 17340 - 17399 8.7 19 6 Tu 1 . - CDS 17416 - 18120 724 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 18205 - 18264 8.3 + Prom 18167 - 18226 11.0 20 7 Tu 1 . + CDS 18295 - 19788 1700 ## COG3104 Dipeptide/tripeptide permease + Term 19794 - 19857 13.6 + Prom 19790 - 19849 7.2 21 8 Tu 1 . + CDS 19964 - 20920 910 ## COG0276 Protoheme ferro-lyase (ferrochelatase) - Term 20894 - 20942 13.1 22 9 Op 1 26/0.000 - CDS 20950 - 21906 1107 ## COG1079 Uncharacterized ABC-type transport system, permease component 23 9 Op 2 24/0.000 - CDS 21906 - 23018 1224 ## COG4603 ABC-type uncharacterized transport system, permease component 24 9 Op 3 . - CDS 23027 - 23407 576 ## COG3845 ABC-type uncharacterized transport systems, ATPase components 25 9 Op 4 15/0.000 - CDS 23404 - 24546 1125 ## COG3845 ABC-type uncharacterized transport systems, ATPase components - Term 24557 - 24593 4.0 26 9 Op 5 2/0.000 - CDS 24614 - 25702 1587 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 25733 - 25792 15.0 27 9 Op 6 . - CDS 25838 - 26935 1170 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 27122 - 27181 12.7 + Prom 27093 - 27152 10.6 28 10 Op 1 4/0.000 + CDS 27280 - 28107 855 ## COG2252 Permeases 29 10 Op 2 . + CDS 28079 - 28591 438 ## COG2252 Permeases 30 10 Op 3 . + CDS 28603 - 29913 931 ## COG0477 Permeases of the major facilitator superfamily 31 11 Op 1 . - CDS 30073 - 31623 1248 ## COG0038 Chloride channel protein EriC - Term 31633 - 31671 6.4 32 11 Op 2 . - CDS 31691 - 33079 1693 ## COG0362 6-phosphogluconate dehydrogenase - Prom 33107 - 33166 14.1 - TRNA 33246 - 33318 82.1 # Thr AGT 0 0 + Prom 33376 - 33435 12.4 33 12 Op 1 . + CDS 33466 - 34152 518 ## COG1285 Uncharacterized membrane protein 34 12 Op 2 . + CDS 34159 - 35325 849 ## LGAS_0015 hypothetical protein - Term 35297 - 35350 7.7 35 13 Op 1 16/0.000 - CDS 35358 - 36731 1437 ## COG0305 Replicative DNA helicase 36 13 Op 2 9/0.000 - CDS 36737 - 37192 603 ## PROTEIN SUPPORTED gi|42518096|ref|NP_964026.1| 50S ribosomal protein L9 37 13 Op 3 . - CDS 37208 - 39223 1962 ## COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain - Prom 39269 - 39328 7.5 - Term 39321 - 39366 5.2 38 14 Op 1 21/0.000 - CDS 39391 - 39627 353 ## PROTEIN SUPPORTED gi|42518093|ref|NP_964023.1| 30S ribosomal protein S18 39 14 Op 2 24/0.000 - CDS 39656 - 40111 655 ## COG0629 Single-stranded DNA-binding protein 40 14 Op 3 . - CDS 40147 - 40443 466 ## PROTEIN SUPPORTED gi|42518091|ref|NP_964021.1| 30S ribosomal protein S6 - Prom 40501 - 40560 5.0 - Term 40459 - 40492 -1.0 41 15 Op 1 24/0.000 - CDS 40622 - 43069 2552 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 42 15 Op 2 . - CDS 43079 - 44146 1122 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 44188 - 44247 3.8 43 16 Op 1 9/0.000 - CDS 44317 - 45039 826 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 44 16 Op 2 9/0.000 - CDS 45040 - 46161 836 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 45 16 Op 3 6/0.000 - CDS 46165 - 46410 128 ## COG2501 Uncharacterized conserved protein - Prom 46431 - 46490 9.7 46 17 Op 1 16/0.000 - CDS 46612 - 47754 1227 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - Prom 47778 - 47837 7.4 - Term 47858 - 47901 4.2 47 17 Op 2 . - CDS 47914 - 49233 1232 ## COG0593 ATPase involved in DNA replication initiation - Prom 49259 - 49318 3.5 + Prom 49641 - 49700 9.5 48 18 Op 1 . + CDS 49754 - 49894 230 ## PROTEIN SUPPORTED gi|227521920|ref|ZP_03951969.1| ribosomal protein L34 + Term 49895 - 49925 2.0 49 18 Op 2 22/0.000 + CDS 49944 - 50315 328 ## COG0594 RNase P protein component 50 18 Op 3 10/0.000 + CDS 50317 - 51192 784 ## COG0706 Preprotein translocase subunit YidC + Term 51224 - 51273 1.1 + Prom 51213 - 51272 5.3 51 18 Op 4 11/0.000 + CDS 51292 - 52677 1688 ## COG0486 Predicted GTPase 52 18 Op 5 . + CDS 52689 - 54581 1915 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division + Term 54616 - 54644 -0.9 53 19 Op 1 18/0.000 - CDS 54670 - 56847 1970 ## COG0209 Ribonucleotide reductase, alpha subunit 54 19 Op 2 4/0.000 - CDS 56837 - 57091 188 ## COG1780 Protein involved in ribonucleotide reduction - Prom 57180 - 57239 4.8 55 19 Op 3 . - CDS 57263 - 58276 1018 ## COG0208 Ribonucleotide reductase, beta subunit - Prom 58428 - 58487 9.3 - Term 58454 - 58489 4.4 56 20 Tu 1 . - CDS 58528 - 59364 728 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 59424 - 59483 8.7 + Prom 59330 - 59389 6.4 57 21 Op 1 . + CDS 59488 - 60009 376 ## LAF_0389 hypothetical protein 58 21 Op 2 . + CDS 60015 - 60707 546 ## COG1011 Predicted hydrolase (HAD superfamily) 59 21 Op 3 . + CDS 60727 - 61017 377 ## COG0708 Exonuclease III 60 21 Op 4 . + CDS 61047 - 61553 543 ## COG0708 Exonuclease III + Prom 61588 - 61647 9.8 61 22 Op 1 . + CDS 61671 - 63122 1478 ## COG0531 Amino acid transporters + Prom 63126 - 63185 6.6 62 22 Op 2 . + CDS 63214 - 64566 1077 ## COG1114 Branched-chain amino acid permeases 63 22 Op 3 . + CDS 64616 - 65527 1227 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 65535 - 65580 6.6 + Prom 65590 - 65649 9.5 64 23 Op 1 . + CDS 65718 - 65822 94 ## 65 23 Op 2 . + CDS 65809 - 66060 224 ## Ldb0080 hypothetical protein + Term 66157 - 66202 6.4 - Term 66193 - 66237 9.2 66 24 Tu 1 . - CDS 66269 - 66556 179 ## gi|309809768|ref|ZP_07703622.1| conserved hypothetical protein - Prom 66685 - 66744 10.6 + Prom 66643 - 66702 8.3 67 25 Op 1 4/0.000 + CDS 66807 - 68132 1377 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 68 25 Op 2 . + CDS 68156 - 69493 313 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 - TRNA 69545 - 69617 85.0 # Lys CTT 0 0 + Prom 69652 - 69711 9.2 69 26 Op 1 8/0.000 + CDS 69825 - 70529 1113 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 70534 - 70562 -0.1 70 26 Op 2 . + CDS 70571 - 72409 1832 ## COG5002 Signal transduction histidine kinase 71 26 Op 3 . + CDS 72399 - 73562 1232 ## LGAS_0066 hypothetical protein + Prom 73611 - 73670 6.9 72 27 Op 1 4/0.000 + CDS 73722 - 74558 776 ## COG4853 Uncharacterized protein conserved in bacteria 73 27 Op 2 3/0.000 + CDS 74583 - 75380 674 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 74 27 Op 3 1/0.000 + CDS 75416 - 76588 1317 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 76597 - 76643 -0.3 + Prom 77029 - 77088 8.1 75 27 Op 4 . + CDS 77140 - 77619 583 ## COG1576 Uncharacterized conserved protein - Term 77523 - 77553 -0.9 76 28 Op 1 . - CDS 77622 - 78278 546 ## LJ0072 ABC transporter permease component 77 28 Op 2 4/0.000 - CDS 78292 - 79665 173 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 78 28 Op 3 . - CDS 79640 - 80188 503 ## COG4721 Predicted membrane protein - Prom 80331 - 80390 5.5 - Term 80208 - 80234 0.1 79 29 Op 1 3/0.000 - CDS 80393 - 81286 773 ## COG0501 Zn-dependent protease with chaperone function 80 29 Op 2 . - CDS 81289 - 81840 511 ## COG1704 Uncharacterized conserved protein 81 29 Op 3 . - CDS 81856 - 82962 1020 ## COG0471 Di- and tricarboxylate transporters - Prom 83141 - 83200 11.9 + Prom 82679 - 82738 4.2 82 30 Tu 1 . + CDS 82862 - 83086 74 ## + Prom 83089 - 83148 5.2 83 31 Op 1 . + CDS 83170 - 83541 354 ## FI9785_136 hypothetical protein 84 31 Op 2 . + CDS 83598 - 83732 209 ## + Term 83753 - 83790 4.1 + Prom 83760 - 83819 9.6 85 32 Op 1 . + CDS 83846 - 84493 810 ## COG1896 Predicted hydrolases of HD superfamily 86 32 Op 2 . + CDS 84566 - 85414 673 ## LGAS_0084 restriction endonuclease + Term 85428 - 85466 2.1 + Prom 85416 - 85475 5.0 87 33 Tu 1 . + CDS 85592 - 87295 208 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 87308 - 87374 6.1 - Term 87300 - 87352 9.6 88 34 Op 1 34/0.000 - CDS 87357 - 88112 271 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 89 34 Op 2 . - CDS 88105 - 89712 1353 ## COG0765 ABC-type amino acid transport system, permease component - Term 89833 - 89872 0.6 90 35 Tu 1 . - CDS 90094 - 91539 1014 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Prom 91566 - 91625 7.5 + Prom 91519 - 91578 10.2 91 36 Tu 1 . + CDS 91620 - 92270 808 ## COG0328 Ribonuclease HI + Term 92319 - 92362 9.2 92 37 Tu 1 . - CDS 92461 - 92628 118 ## COG2801 Transposase and inactivated derivatives - Prom 92869 - 92928 3.5 Predicted protein(s) >gi|308169884|gb|AEHR01000021.1| GENE 1 140 - 1555 1356 471 aa, chain - ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 1 463 1 460 463 357 44.0 2e-98 MSNFFKKVSIDTYLKSDARLVRSLNARDLIALGIGAVIGTGIFILPGHEAADHSGPAVAV AFLLAAVVSGIVGMAYAEFSSAMPVAGSAYSFGSIIYGEIVGWILGWSLLLEYFLAVSAE ATGFASYFNDNILNSFGFNLPKSLQAGPLQGGIINLSAVLITLIVAFIIYQGANLSKRVE NIAVIIKVSIIILFIIIGIFYIKADNYIPFYPKKFQTAPFGIGGISTAAATAFFAFIGFD ALASNSAETIKPEKNVVRGILGTVLISVVLYVAFSLVLTGMVNYKKLGVDDPAAYALKSV GLHSFNKIITLGALIGIFTAMLTMLLGGSRLLYALGRDHLLPPVMGKVDKVREVPDNAII IATIVAAFFAGLVPLFELAALINAGTLLAFTLISFGIIPLRKRKDIVNKGFKMPLYPVLP ILAGVFSLYFIFMLPILTKIMVTLWLIVGLLVYIFYGVKHSKLQNQESYKK >gi|308169884|gb|AEHR01000021.1| GENE 2 1750 - 2451 207 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 197 1 201 318 84 27 2e-15 MTYIDIKNCTKIFKNGMEKIYANNNINFVINRGELVIILGSSGAGKSTLLNILGGMENCS SGDIIIDGKNISHYSHKKLTQYRRYDVGFVFQFYNLIPNLTAKENVELAAELVANAMPAD KALKLVGLENRMNNFPSQLSGGEQQRVAIARAIAKNPKLLLCDEPTGALDYKTGKKILNL LQTMCHNSGVTTIIVTHNSAIAPIADKIIHIQDGQVKKMDINSDPTSIDDIEW >gi|308169884|gb|AEHR01000021.1| GENE 3 2461 - 4902 1526 813 aa, chain + ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 252 813 332 896 896 437 41.0 1e-122 MNKKVLWRYSIHSITNSITRFIAITLLLGLGTFALLGLKSTGPDMRAIGRQFFVKQNLAD LIITSNYGIDNIDKKLLQNFKDTAKLECGYQQDVITKKNNLAIRIFSKPKNISIPKVVTG KMPSKANEIALSFLLQNKFHIGQTITFKHSATIKSHSFKIVGFIKSPEYLDRSFVGQTNI GNGRLDGFATITKGNFQSSVYHVARLKLKQVKHIDPYNKKYNQFVYSDQQKLYKLLNANL SHKDMQANLFKNTLGLPYYTVQSRDNLESYTQYISNSKKIDILSNVFPVFLFAVAGLVTF STMTRFIDSDRINIGTLKGLGYSNLDIALQFVIFSTLASSLGIFIGAYTGFNYLPNIIMK AYLANSILNDQLINLISVPLLIEAIIICVSSTIVASMWALWGALREEPKALLLPKQPKLG SSILLEKIPPLWNRLSFSLKITARNVFRFKSRMFMTILGIAGCCALLVMGLGIRDSLKEI ADTQYGDIIKYDLIALHNHQIPQNNSHYQSIINDNYVKRHTYINYKVCHTKQPHKFIDSN IQVIAFADKNVLKKYFDLRNRRNKERYLLNSSGAIINEKLAKIMHVKVGDKLTFKDNYNH TKKVTISHICEMYLGHYLFMNRKTYQKVFQTSYTSNADMISLKSHKDLNKFNEKLLKTNN LQTILSNQTSFKTLKNFTGNLTEVIIILIIMAIMLALIVIYNLTNINMLECIREIATLKV LGYFSIEATMYIYRETIILAIFGIFGGWFLGFLLHKFIIVQLPPSFSMFDPNIYLDNLLI SAIIPLVVTTILAFIIHFKIKKQDMLQALQSVE >gi|308169884|gb|AEHR01000021.1| GENE 4 4954 - 7239 1937 761 aa, chain - ## HITS:1 COG:SPy1309 KEGG:ns NR:ns ## COG: SPy1309 COG3966 # Protein_GI_number: 15675258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Streptococcus pyogenes M1 GAS # 6 420 4 416 416 322 42.0 2e-87 MNSKSRLLHIFGPLICAFVLLELVLLYPWTTNIKSEQLLYKASVSCSKNIFKGQEIKQAA FSKEYVPFYGSSELLRMDCCHPSVLAYKYKRDYKPFLLGGPGSQSLTQFFNMQETVQQLQ NKKAVYIISPQWFTKQGQNPNAFGLYFSQLQLVNWLLSAKDSIATRYVARRLLSMPKVAI NSNVITNYALMMIAAGKKLTPEQLLWFRIRRRMLLNEDNFFTSMFCDDNVDHIKKVSEKL PDKYDPDKLHEVATLEGKLNTNNNSFGIANQFYTKRLNNANLQRLKGAQKAFNYTKSPEY SDLQLVLSEFAKEHVNVLFVIPPVNKKWSDYTGLSSKMYQKTVAKIKQQLISQGFYNIAD LSRDGGKPYFMEDTIHLGWNGWLEVDKYVRPLMKQCNIPISYNLKNYYFSKTWANKVNIK HTTKQLTPKKQAQLHIKQALDNAKVRGNVLVIKNNKPFLNYQNSYADYDMKKETLPNSSY LINSTQKVMTAVMLMKQVEKGRLSLSDKLSKFYPQVPFADKISISQLLSMTSGLATRPRA ILGTSTFKSNQAGIRYDIKKNIIFSPKLYNKRYYDSFNYVLISGILEKITHKTYEQLFTA TYIKPLALKHTAFAWSKPAKMLEIGAVNSYQSLDNVSNPLVKVNIDINQLHGLVGAGNIY MSNADLYKTIRYILQGKIISNQSIKELFNKVNNKNDGSNYMGGFYNFVSFKSCNGYGYGF SNFVRISKDGSNAIIVQTNMPIKRFFALRATMNKLILGLSN >gi|308169884|gb|AEHR01000021.1| GENE 5 7232 - 7471 367 79 aa, chain - ## HITS:1 COG:SP2174 KEGG:ns NR:ns ## COG: SP2174 COG0236 # Protein_GI_number: 15901984 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 78 1 78 79 76 53.0 1e-14 MDIKQIVLDILNELTGEDLSSRMDDNLFDTGLLDSMATVQLLLELQEQCDVTAPVSEFNR DEWNTVNKIIAKVESLKNE >gi|308169884|gb|AEHR01000021.1| GENE 6 7517 - 7741 192 74 aa, chain - ## HITS:1 COG:SP2175 KEGG:ns NR:ns ## COG: SP2175 COG1696 # Protein_GI_number: 15901985 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pneumoniae TIGR4 # 1 74 331 412 413 78 46.0 4e-15 MGFWHGITWYYIVYGIFHAVAIIINDIWLRFKKKHSDHIPHNKFTEAFAIFLTINIVCFG FLIFSGFLDTLWFK >gi|308169884|gb|AEHR01000021.1| GENE 7 7791 - 8735 845 314 aa, chain - ## HITS:1 COG:SPy1311 KEGG:ns NR:ns ## COG: SPy1311 COG1696 # Protein_GI_number: 15675260 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pyogenes M1 GAS # 4 310 11 311 418 270 48.0 3e-72 MINLQPYTNPRYFIILFIALLPLIIGLYNGKRYKNYEAFISFLFLFLMFSGSEWIQGVQI IGYVIFQFLITFLYQKYLKKGKNSTKVFVCAVIASILPLALVKIAPLVPTDVSSLIGFVG ISYLTFKTVQVIMELRDKTIKSVDPVTYARFLLFFPTISSGPIDRYRRFQKDYDTAPTRD QYLDYLEKGTFYIFQGFLYKFIIGYVFGTLWLPQLAKTALFIGKANGGLRLSWALVGYMY CYSMYLFFDFAGYSLFAVGTSYFMGINTPVNFNKPFISKNIKDFWNRWHMTLSFWFRDFI FMRFTFFAMKKAID >gi|308169884|gb|AEHR01000021.1| GENE 8 8732 - 9088 437 118 aa, chain - ## HITS:1 COG:SPy1312 KEGG:ns NR:ns ## COG: SPy1312 COG1020 # Protein_GI_number: 15675261 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pyogenes M1 GAS # 1 117 394 511 512 126 47.0 8e-30 MLFYRGRIDFQIKFNGFRIELEEINFYLSKNPLVRYGVVAPKYNKDNKVQQLVAVVELAE GVKEKYSEKEITQQIRESLEKEVMPYMIPQRFVYKDKLPISQNGKVNIKQVIKEVNNA >gi|308169884|gb|AEHR01000021.1| GENE 9 9096 - 10250 1480 384 aa, chain - ## HITS:1 COG:SPy1312 KEGG:ns NR:ns ## COG: SPy1312 COG1020 # Protein_GI_number: 15675261 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pyogenes M1 GAS # 1 382 1 387 512 340 44.0 2e-93 MIKDIIQKIDGIALEDPHRLAYDYLGNTKTYGELKLRSDQYATKINSLGLASKEPIMIWG GQTFDVIAAFLGCLKSGHAYIPIASYSNSDRLFMIQDVSKATTVIAVDPLPVAVEGVNVI VPSDIDKIDSVKINEADFVAGDDNFYILFTSGTTGKPKGVQISYNNVVSFLNWEFADFKL PDRPKFLAQVTYSFDVSVMSIYPALLSGGSIVVMPHEITSNLGQLFKILPNLKFNIWVST PSFVEMCFLDPTFNQEHHPDITHFLLCGEEFGHRTAQMLHNKFSNSHIFNTYGPTETTVA ITQVEITDEILKKYNRLPIGKVKEDTVITIDTTKGQKESQGEIVVTGPTVSKGYMNDPER TKKVFFHQDGQKYPSYRVGDLGFF >gi|308169884|gb|AEHR01000021.1| GENE 10 10269 - 10424 74 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500728|ref|ZP_05743630.1| ## NR: gi|259500728|ref|ZP_05743630.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_02255 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] D-Ala-teichoic acid biosynthesis protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0580 [Lactobacillus iners UPII 143-D] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] D-Ala-teichoic acid biosynthesis protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0580 [Lactobacillus iners UPII 143-D] # 1 51 1 51 51 69 100.0 6e-11 MIKINDKNKTCLKNISIFVLKTLFYFAILLVLVYLYSYSGIGAAKFIYKDF >gi|308169884|gb|AEHR01000021.1| GENE 11 10487 - 10783 306 98 aa, chain - ## HITS:1 COG:no KEGG:LJ1785 NR:ns ## KEGG: LJ1785 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 9 93 8 92 96 64 41.0 1e-09 MILPGVRRWIRISGWLGIFVAYIILQMYNYTHQPMFIVSLVIVILYSAYMLATSAEPSWY ITSIMLRRIIICICLVSIIQGVFLCIAYYKLKKSRTIK >gi|308169884|gb|AEHR01000021.1| GENE 12 10800 - 11948 1224 382 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1737 NR:ns ## KEGG: FI9785_1737 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 381 1 382 383 467 60.0 1e-130 MKIFKKVFRSCFIVLSLSLVVIISFIAYHSYLEHKSVKINVYSRPALIKAADGNSISPSY NSLYAYKKRLSERYPNIYQAAFDAPSQSHIGSNVTIPGLVVTRAYDYTKRKITEADEMTP QGITIADKYILVSAYDAKNRHASVIYVINSHTQKYVKTIQVPGRPHLGGITYDPVAHNIW ITGRQNGQAALMSFSLKKLKRYDYKKKHKSVQYDHIVTLPTVERASCVTYYDNQLFICLF NKYCKGQIVSYPISRTKPYKGTIISDQIKAVTGEVSWALGSGSAGLDPQIQGLAFYQNRI ILSQSYGSQDSKLYFYSTSALNNLDNSKADKVVNLPPYLEQIHAVDGQLLMLFESGSKAY ARDNMMVMDRILSVNINALLGS >gi|308169884|gb|AEHR01000021.1| GENE 13 12097 - 12588 401 163 aa, chain + ## HITS:1 COG:lin1008 KEGG:ns NR:ns ## COG: lin1008 COG0517 # Protein_GI_number: 16800077 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 144 1 143 150 85 40.0 5e-17 MFSPAIKNLLDKKSGTFFIPASKIAFVQDDAPLYHAFLILTKVRYAKIPVLNKEKCVVGL LSLAMITNKMLLTDHISTNPLTILKVKDVMQTTFSKINFTQTTLETQLHLLIDNSFLPVV NDTGIFQGILTRREWIKAFNFVVHNFENYYNVIPIKNQNKNNN >gi|308169884|gb|AEHR01000021.1| GENE 14 12774 - 13934 1400 386 aa, chain + ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 381 1 376 379 242 44.0 8e-64 MHFLGELILILLITTILGQLFTRLEMPAVIGQLLSGIILGPAILSLVHPNQTITLFSEFG VILLMFLAGLESDIDLLKKYFKLSFTVASTGVILPVLFISTSCLFFKMKPLEALFIGIVF AATSVSISVEVLKDAKQLNSRAGTAILGAAVVDDILAVVVLSLFTTFSHEGGRSGLTNNF FINIVIEIGYFIVVWLIYKFIAPYFMRIAEKISVSYSVVIASLILSLTMAWVADFVGLSA VVGAFFGGLAIRQTPQYEEVAESVSAIGYSIFIPVFFAEIGLVMTFSSIIQDAIFIILMT ILALLSKFWAGKYSSEYFGFTPLEGNIVGAGMISRGEVALIVAQIGIAHHLFPRDIYSSL ILVIIVTTVISPFILNYYIKKTPQLS >gi|308169884|gb|AEHR01000021.1| GENE 15 13975 - 14622 484 215 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1838 NR:ns ## KEGG: LGAS_1838 # Name: not_defined # Def: metal-dependent membrane protease # Organism: L.gasseri # Pathway: not_defined # 1 214 1 212 215 163 47.0 5e-39 MKKIISHLIHALYIFFAFFIYTLLQLLYFFRIPKTWKPFYNILAVAISLVGILLLAYLYY KGLKHQKLSFNNKPHWDIKRILFSLGMFILLIVCQVVMIKFFYANHISANQKELIHMQQR VGSLFKVLVILVAPFCEEIIFRGLFFNYFFTQDNIYSKTFGIIINGFLFAWLHDPTFSIF IYLYWVMGMILAFTYLQTKDLRYSILVHMLNNMLG >gi|308169884|gb|AEHR01000021.1| GENE 16 14713 - 15951 1244 412 aa, chain - ## HITS:1 COG:BS_yebB KEGG:ns NR:ns ## COG: BS_yebB COG2252 # Protein_GI_number: 16077704 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus subtilis # 4 411 1 417 440 366 52.0 1e-101 MNIIKKYFSLDEAHTSIKIEFLAGLTTFISMSYILFVNPSVLGASGMDKGAVFTATALAS ALGTAIMGIVANYPIGEAPALGINAFFAYTVCIGMHVKWQTALASVFVASVLFILITLLK LREKIINSIPADLKFAISSGIGLFIAFLGLQNSGMIVGNKATLVSIGSLENPLVWITIFG LLLTVVLMILNIPGSIFIGMVFAAIFGIVIGQIAVPTKFISFAPSLKPIFGQAIYHIGDI NTVQMVVVVLTFLLVTFFDTAGTLIGLAQQAGFIKNNKMPRVGKALAADSTAMMAGSVLG TSPVGAFVESSSGIAVGGRTGLTAVFISIFFLISMLFSPLLSIFTAQVTAPALIIVGVLM AQNTAHIHWDRLEIAVPAFLILLGMPLTYSISDGISLGMITYPICMIAAKKI >gi|308169884|gb|AEHR01000021.1| GENE 17 15973 - 16638 899 221 aa, chain - ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 211 1 212 217 243 58.0 2e-64 MAVIVLSGPIGAGKSSLTSILSKYLATDPFYESVDDNPVLPLFYENPKKYAFLLQVYFLN TRFKSIKKALSADNNVLDRSIYEDALFFQMNADIGRATKEEVTTYYELLDGMMAELKAMP KRQPDLLIHIHVSYETMIKRIQKRGRKYEQLSYDPTLEDYYKRLLTYYKPWYDQYNYSPK MVIDGDKYDFMNSADDCDKVLKMIVAKLKEVGKLPQDWTKL >gi|308169884|gb|AEHR01000021.1| GENE 18 16651 - 17295 664 214 aa, chain - ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 211 1 212 217 221 54.0 6e-58 MTVIVLSGPIGAGKSSLTKILADELHGQAFYENVDGNPILPLFYKDMSKYTFLLNVYLMN HRLEQINCANKMKNSVIDHSIYEDSVFFKMNVDNGIADSTEFKIYRDLVNNMMEDVPGSV HKKPDLLIYIHASLDTMLKHIKQRGRIFEQLSTDPKLEDYYACLNSHYDPWFEQYDASDK LMIDGDKYDFVNDVSARKIVVNQVMEKLRNLGKL >gi|308169884|gb|AEHR01000021.1| GENE 19 17416 - 18120 724 234 aa, chain - ## HITS:1 COG:L14408 KEGG:ns NR:ns ## COG: L14408 COG0363 # Protein_GI_number: 15673555 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Lactococcus lactis # 1 234 1 234 235 286 60.0 2e-77 MIVTIVKDKYEGGKKAFELIKKGVADGAKVLGLATGSTPITLYDQMVESDVDFTNITSIN LDEYYGLDPQNSQSYHYFMKKHLFEKKPFYKTYIPNGKAKDINQEIADYDKIISDNPIDI QILGIGGNGHIAFNEPGTPFDSTTHEVTLASSTIKANSRFFDNQDDVPKRAICMGIKSIM SAKQIILMAYGAAKQDAVKAMVEGPVTETVPASVLQKHPNVVVIVDRDAAAKLS >gi|308169884|gb|AEHR01000021.1| GENE 20 18295 - 19788 1700 497 aa, chain + ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 7 483 6 478 492 429 50.0 1e-120 MSQKNSDTAFFGQPKGLSTIFYTVMWERFSYYGMRAILIYYIYYAVNKGGLGMSQYNAAA IMSIYGSLVFISTLLGGWISDRIWGTYKTTFIGGILIMMGHICLSTPLGVAALYLSIAFI VLGSGFLNPSASATVGNLYDKNDQRRDAGFSLYVFGINFGAMIAPIVVPWASSGFGFHVF GNVTNFHAGFVLAAIGMLLGLIQYYFASNKYLPAKSFKPEDPMTKQEKKQVLIKFSYGII SLLIVLGAMALLHALNINNIINLITIIAVVLPIIYFAIIFKSNKVSHSERRKVIAYIPLF LAAIIFWGIEESGAVVLALFAENRTVLHVGSWYFQAANFQLLNPLFIMILTPIFVALWNS WKKQPTAPTKFAVGLGFAGLSYLVMAIPGALFGTSGRVSPLWLVLSWFIVEIGEMLISPI GLSVTTQLSPKVFKTQMMSLWYLSDAVAQAINAQIIRFYTPKTEVNYFIAVGIVSIVFGI LLLFGVKKISALMGDSK >gi|308169884|gb|AEHR01000021.1| GENE 21 19964 - 20920 910 318 aa, chain + ## HITS:1 COG:L0194 KEGG:ns NR:ns ## COG: L0194 COG0276 # Protein_GI_number: 15673549 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Lactococcus lactis # 2 306 5 306 314 240 39.0 2e-63 MQGLLLVNLGTPTSPTKNDIEQFILDFMGDPNVVNMPQWMWKPLLKHVILPIHIKKSIIS YQKIWSQNGSPLRFYTEKITQQVQALLPDWQVKMAMTYGDPSINTTIQEMKNNGCDHLVL LPLYPQYANCTVKTIIATAKQTCSNLDLPLTIIKHFCTNNEYLEILVKDIQHYWDLDKYD HLYISYHGIPQSAIKKGDIYLKDCTAQTQAMCQMLNIPSEKITMVFQSKCGLMPWLKPYL NKTLIQAAKDGIKKVLIVTPSFVTDCSETIAEDAIDNKNLFIKYGGENLTVVPPMNDSPA FAQFLTTLATNVNKTKKG >gi|308169884|gb|AEHR01000021.1| GENE 22 20950 - 21906 1107 318 aa, chain - ## HITS:1 COG:SPy1225 KEGG:ns NR:ns ## COG: SPy1225 COG1079 # Protein_GI_number: 15675189 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 318 1 318 318 394 65.0 1e-110 MDIVSMLSLIVSSTLVFSAPLMYSAIGGTFSEHGGIVNIGLEGIMTMGAFSSIVFNLSFY KQFGIWTPWLGALIGGIVGLIFSLLHACATINFHADHIISGTVLNLMAPAFSVFLVKAIY SKGQTENITENFGYFTFPVLGQIPIVGKIFFRNTSAAAWLAIVIAVISWEIMFKTRFGLR LRACGENPQAADTMGINVYLLRYDGVLLSGFLAGFGGAVFAQSISGNFSVSTIVGQGFMA LAAMIFGKWNPLGAMGASLFFGFAQSLSIIGKQLPMIEHLPSVYLQCTPYLMTIIVLVLF FGKSVAPKADGINYIKSK >gi|308169884|gb|AEHR01000021.1| GENE 23 21906 - 23018 1224 370 aa, chain - ## HITS:1 COG:L166804 KEGG:ns NR:ns ## COG: L166804 COG4603 # Protein_GI_number: 15673311 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Lactococcus lactis # 6 360 4 359 364 309 49.0 7e-84 MIGKKKINKALISLIAILMGFIVGALIMLVWSYNPITAYTYMFQGALGTPLELGETLREM TPLVFTAIGFAVADKAGFFNIGLPGQAQAGWVTSVWIVLANQHLPKIILIPLALISGAIA GAVVAGIAGVLRAYFGTNEVITTIMLNYIVLYVCQYLTQQIMPEKLRINIDTTKTISDNG SLRWEWLTNMFGGSRISSGIFLAIIGLIAFYIIMNKTTIGFEIKAVGLNPHASTYAGISA KKNIIVSMLLSGAYAGLGGVILGLGTYQNYFTQTGNVDIGFDGLSVALLGGNTAVGIFLA ALLFSILKIGGLGMQTGAGIPYEIVSIVIAAIIFFVAIHYIIEYLLNYKKVMKHSCTSDK TQGLEVGGSK >gi|308169884|gb|AEHR01000021.1| GENE 24 23027 - 23407 576 126 aa, chain - ## HITS:1 COG:SPy1227 KEGG:ns NR:ns ## COG: SPy1227 COG3845 # Protein_GI_number: 15675191 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 5 124 382 501 510 161 68.0 2e-40 MIKKAERLVKGFDIRAANLMIPAGDLSGGNQQKAIIARELDRNADLIIVFQPTRGLDVGA IEYIHEQLLKQREAGKAVLLVSYELDEILKLSDRIAVIHNGQISGTVLPADTNERELGLL MTGAVR >gi|308169884|gb|AEHR01000021.1| GENE 25 23404 - 24546 1125 380 aa, chain - ## HITS:1 COG:SPy1227 KEGG:ns NR:ns ## COG: SPy1227 COG3845 # Protein_GI_number: 15675191 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 7 380 4 377 510 424 60.0 1e-118 MDNTVDNVIEMRHIVKQFGNFRANDDINLTLKKGEILALLGENGAGKSTLMNILSGLLQP TSGDIYVNGKKVIIKDPNTAKRLKIGMVHQHFMLAESFSVLENIILGNEITKGCFIDFKK EKEKIIELSKQYGLAVNLSAKISQTTVSQQQRIEILKVLYRGADILIFDEPTAVLTPQEI TEFIKVIKGLVHEGKSIIFITHKLKEIKEACDRVTVIRRGKSIGTIDTSATTDQQLADMM VGRKVNLNVTKPSSNIGDTILDVENLVVKDSRGVQIVKKLSLQVHRGEILGLAGIDGNGQ DELVEALTGLRHVESGCIRIKGHDSTNQQVRKITQCGVAHVPADRQKYGLILSMSLADNL ALQTYYEKPLSKHGFLQKKK >gi|308169884|gb|AEHR01000021.1| GENE 26 24614 - 25702 1587 362 aa, chain - ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 6 358 3 350 350 280 47.0 3e-75 MHLNLKKSITLGLVVTAMGILSAGCSHNTQNGAGNSDKKHSIALITDFNGVDDHSYNEIA WKGFTDYGKEHHLKRGAGGYQYFESNGASDFVPNLNQAASAGYQTIYGVGFTLTDSIKAA SKKNPKRNFVIVDSVITGRKNVVSTIFKSNDASYLAGLAAAGTTKTGKVGFVGGVRSSVI DLFEAGFRKGVADGAKALKKKVTVNVQYVGDFTSTDKAKSIAKSMYADNADIVYQAAGQA GNGVFQEAKDYNKTKLAKQKVWVIGVDIDQEKLGNYVSKDGKKENFTLTSVLKGLDVVCK DIADKAYHNKFPGGKTLVYGLDSNGVSLTRGHIDAKTWSSIKKARQAIIDGKIKVPVKPA KK >gi|308169884|gb|AEHR01000021.1| GENE 27 25838 - 26935 1170 365 aa, chain - ## HITS:1 COG:lin1425 KEGG:ns NR:ns ## COG: lin1425 COG1744 # Protein_GI_number: 16800493 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Listeria innocua # 14 362 12 357 357 278 44.0 8e-75 MKKSFKSVLKAGLILTTVGLLLSACAGKKQGGASSDSKTTKHNIALITDVAGVDDHSFNQ SAWTGFKQYGKEHNLGRGNNGYQYFQSNGASDFVPNIEQAVNANFETIFGVGYSLKDAIA QSAKKYPKKNFVIIDDWIKNQKNVVSANFKSQDASYLAGVVAAYTTKTNVVGFIGGVHGH IVDLFDAGFTKGVQDTAKKLHKNIKILNQYAGSFVSSDKGRAIAQTMYAKKADIIFHAAG KTGDGIFQAAKSINQTKPANKKVWVIGVDSDQSSLGEYVAKGGQKSNFTLTSVITGVNVA VKDIADRAYRKQFPGGKSLNYGLSNDGVAIVHNTDIPNKVWIASQKARTNILKGRIKVPI HPKNK >gi|308169884|gb|AEHR01000021.1| GENE 28 27280 - 28107 855 275 aa, chain + ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 4 258 1 257 434 213 49.0 2e-55 MQILDNFFHLKKSKTSIKQEFIAALTTFVSLSYILFANPNILHDAGIDKGAAFTVTAIAT AIGCFLMGIIANYPIALAPTLGSGAFFAYNVCIGMKIPWATALAAVLLASILFILITILK LREMVVDAIPQDLKYAISSGIGLFIAFIGLQSSKLIVNSNSTLVKLGSFNNPDTWVSMFG IILTVILVASRIPGSIFIGMLLTALFGIIIRQIPLPNSIVSSAPSIAPTFGKAILELKNI NTTQLFMVVITFLLVTFFRHCWHPNWNDATSWYGR >gi|308169884|gb|AEHR01000021.1| GENE 29 28079 - 28591 438 170 aa, chain + ## HITS:1 COG:SA2050 KEGG:ns NR:ns ## COG: SA2050 COG2252 # Protein_GI_number: 15927833 # Func_class: R General function prediction only # Function: Permeases # Organism: Staphylococcus aureus N315 # 4 169 279 443 444 150 50.0 1e-36 MTQQAGMVDKQGKIPRIGKAFLSDSLAMVEGAILGTAPLGTSVESSAGIAMGGRTGLTSI LVGFLFIISLVFSPLLTVIPSTVTSPALIIVGVLMAANLKNIHWHEFEIAFPAFLIVIGM PLTYSISDGLALGMIAYPITMIAAKRYKEIPKMMYILLIIFIAFFIITNL >gi|308169884|gb|AEHR01000021.1| GENE 30 28603 - 29913 931 436 aa, chain + ## HITS:1 COG:YPO2459 KEGG:ns NR:ns ## COG: YPO2459 COG0477 # Protein_GI_number: 16122680 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 14 435 15 432 452 175 30.0 2e-43 MQENYNKKNYQYAPFSKVHLRVYIAICLGQIACGYSLGISGLAIEAANKYLNITSIWNGL IGSGTLIGLGGSIFMGRLADKIGRHHMLMINMYVLSFLSIIQLFTSNLLFTFIIRIGIGL MIAIDYTVGNALLIEWMPIQEGAKKQSSILLYWTLGFVISYPIGLIIHGFGPLTWRIILA SVAFFSLIAALYRTSFNLPGSPSWLASRGNFVDANKIIQYQLGKKWGLPKHLERYKPIKS LSWTELFNKHYLRRTIVGGGFYACQSFAYFGISIFLPLILKSMNLQNNYLPGIIYNIGIF VGVSIGVVIFNHIGRKIFLTSTFLISAISIGLLALSLHANAWIKVVLFLIFAMSLSSGLV FDYTYTTELFDVKIRATGVGTCIAISRIGAFLGTFLLPIINQNYGTSTAMFICFIVLVFG ALICGILAIETTALSK >gi|308169884|gb|AEHR01000021.1| GENE 31 30073 - 31623 1248 516 aa, chain - ## HITS:1 COG:L113400 KEGG:ns NR:ns ## COG: L113400 COG0038 # Protein_GI_number: 15673646 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Lactococcus lactis # 13 497 16 493 512 274 35.0 4e-73 MISKKVKISAYKVLMQALLVGLLVGIVVGIFRFGIEKMSALWLKLFELTHDNPYWFVVVV VGLILTGVIAGYFVHQQAHVGGSGIPEVKLQLQGKLDIPWWPILWRKLLGGIMVISTGIF LGPEGPSLQLGSTIGQGVGEKFKQSKTNSRILLATGAASGLAAAFGAPLSGVMFVLEEVF HNFSSRVWMNALAGAIAADFVVSNVFGQKAVLAIPYKHTFPVNLYWQLVILGVILGLLGQ LYKHSLFSFKKIYTHITWIPRWLHGLIPLLMVIPIAYYLPAITGPGHRLIFSLSGFITKS GWNVVLLLISFYILRIVFSIFSYDSGLPSGIFLPILAMGAVIGASYGMLMVNLHLMPAHL VVNLIIFSMAGYFAVIIRAPFTAIILITEMVGSLLHLMPLAVVAFVGLIIDNLMDGKPIY GMLAAHMQLNDMTQDESGHEDQITVPVYEGSSMIDKSISQISWPKNTLVKLIKRGSRDII PNGKTKIVAGDALILVIDEGQRATVYDEMTKLQGFI >gi|308169884|gb|AEHR01000021.1| GENE 32 31691 - 33079 1693 462 aa, chain - ## HITS:1 COG:L0046 KEGG:ns NR:ns ## COG: L0046 COG0362 # Protein_GI_number: 15672604 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Lactococcus lactis # 4 461 6 471 472 481 50.0 1e-135 MQQFGVIGLSVMGKNLALNIRNHGFSVAGFSIDKPEVDALAKYEDDKLKPTYSWEEFINS LEKPRKMLIMIRAGKPVDMTLEKLTELLEPGDIVIDGGNSNFNDTNRRFKKLEEKGIHFI GMGVSGGEEGALNGPALMPGGDKEAYDKVSPILESIAAKTEEGVPCVAYIGPEASGHYVK MVHNGMEYGIMQIICEVYDVLRTVGNCTNEQMSEIFAKWDEGQLHSYLTEITSKVLKQRD DLADGYIVDKILNVASYKGTGNWMLEDAIKLGCPITVIAEAVLARFASKATLRDGCMPEF KGKVDLNQLITKLANAYYLASAVSYAQGFQQLSMAAKEYGWNLHYPAIAQTWEAGCIIRS SMLKDIENAFNQDADLPNLFKDKYFNDIANKYTTDLEEIVKLAVEAGIPIPTLGAAYSYL KTIFNPKLPQNLLQGQRDYFGAHTYYRNDRDGVYHMEWYTEK >gi|308169884|gb|AEHR01000021.1| GENE 33 33466 - 34152 518 228 aa, chain + ## HITS:1 COG:CAC3658 KEGG:ns NR:ns ## COG: CAC3658 COG1285 # Protein_GI_number: 15896891 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Clostridium acetobutylicum # 1 223 1 227 229 169 40.0 5e-42 MQNFPFFLDCFFRILIAALCGAAIGYERATLRKSAGIRTHIVVAVASALFMIVSKYGFFD ILKDTGIGLDPSRIAAQIVTGISFIGAGTILVRKAQVSGLTTAAGVWATAAIGTAVGAGM YTIGIISTCFLFIVQIVFHDDTFINFLIVHVRFNVQIEVDNVPNILNELKQILANNDVEQ VSLKLINASKDRLLINVDGIIKSRKDENDIIIALEKNNYIHRVSCARG >gi|308169884|gb|AEHR01000021.1| GENE 34 34159 - 35325 849 388 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0015 NR:ns ## KEGG: LGAS_0015 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 382 1 378 380 397 49.0 1e-109 MANILNYMRWRGDLPFSINKFNSIDAAFFATFVYLPFPTISKKILLSDLASEYINNQDML KKINSYEKEQLQLIPFCKRYGDLEILDWTNTIKTNPPVQFSAATFRLNKNTILVAFRGTD GSMIGIKEDIDLSFHPKTSGLTVAKHYLQRIATQFNNDNIYIVGHSKGGMFSQYAAIFAP QFIQDRIIKVYSFDGPGLMHNYYSPSKYKEVLPKFITYIPEGSIFGLMLDHPEHVLVVKS NANMLKQHNIIQWEVARNGFVLASNGLTNASRILRHSFISVNTKIPINDRESLWMAIFSA LESQNVVDFSQLRDSKLRSAINLSQAYMSLSPQLKIVANEVISIIATSAKNHINIPFINK AKLLKPLSNNSNKGPIVDDSYDQTMQKK >gi|308169884|gb|AEHR01000021.1| GENE 35 35358 - 36731 1437 457 aa, chain - ## HITS:1 COG:L0286 KEGG:ns NR:ns ## COG: L0286 COG0305 # Protein_GI_number: 15672728 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Lactococcus lactis # 10 447 11 450 455 455 58.0 1e-128 MANIISQQIPHDSEAEKAVLGAIFLDNSAIVDAYDILKPDDFYERANKLVFQAMINISER DEGIDALTLQDELKKNNQLDDIGGIAYVSELAMSTPTAVHITYYANIVKRKAILRNLIFT SQNIIQNAIKDSDDITDILDDAERSILNVSQDNSQNGFKTIKDILSETIDNINNIPADGN MVTGLATGFVELDKMTTGFHDDEMIVFAARPGVGKTAFALNVAQHVGLYDKKTVAIFSLE MGAEQLVQRMLASQGLINSQHLRTGQLDSDEWNKLFVASGLLEATDIYIDDTPGIKISEI RGKSRKLAKEKGNLGLIVIDYLQLIEGGKSESRQQEVSFISRQLKKLAKELHVPVIALSQ LSRSVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRDDKSTDIKSEKDNGEVEII IEKNRSGSRGTVKLMFSKPYNRFSNLDFAHNNVPPEK >gi|308169884|gb|AEHR01000021.1| GENE 36 36737 - 37192 603 151 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518096|ref|NP_964026.1| 50S ribosomal protein L9 [Lactobacillus johnsonii NCC 533] # 1 150 1 150 151 236 79 2e-61 MKVIFISDVKGKGKKGQIKEVPTGYAQNFLLKKGLAKEATSSNLNIQKRLEKAEHDAYEA EKAEAEQIKLKLEDDKTIVKFQSKAGNDSRLFGSISSKKIVEGLEEQFGIVIDKRKLMLP EPIKALGYTNVAVKLFKGIEAKIRVHITEKK >gi|308169884|gb|AEHR01000021.1| GENE 37 37208 - 39223 1962 671 aa, chain - ## HITS:1 COG:lin0045 KEGG:ns NR:ns ## COG: lin0045 COG3887 # Protein_GI_number: 16799124 # Func_class: T Signal transduction mechanisms # Function: Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain # Organism: Listeria innocua # 38 667 9 652 657 560 45.0 1e-159 MKDFLRKLELPAFVKDSRLTASLIIVLSLSFVGFIVGLLISPLYGLAMLLLFILTCTFSI YGIYVLAINTNNYASNLSYRIKRGEQEAMIKMPLGILLYDEDQQIQWVNPYLQLFLKNND MIGTSLKNLDEQLYKSINDAIRDKDTNNRVIRVGKHKCEIVVQNDLGVVYILDITKYAAI ERRYQDQRLSIGLIFIDNYDELSQAMGDQNLTDMSSYIQNALNEYAKRFNAYLKRIDEDH YLLLSHMIDLHKMEADRFSILDKVRKESSRCNTPLTLSVGIAFGSESLNDISEQAQSNLD LALGRGGDQVVVRQIGKDAHFYGGKSNPMEKRTRVRARVVSQALQELFKDADHVFVQGHK SPDLDAIGSAIGIVKIARIHGVKANVILDLSELNYDVERLIKKMQEAGVDQEIFISPDEA VQIATDNSLLVLTDHSKYSITYNQSIYDKMKNRLVVIDHHRRGEEFPENPMLVYIEPYAS STCELVTEMIEYQPQGGDGVLNYLEATAMLAGITVDSKEFSLRTGTRTFDAASYLRSIGA DSQVVSYLLKESIDNYLKRSYLVSTVDMVHSNMAILSGNDSEIYDAIIIAQAADTALSLE GVSASFAIARRSNSMIGISARSTGKINVQVIMEKLGGGGHLSNAATQLDNISVSEAKERL LQAIDSYLQEN >gi|308169884|gb|AEHR01000021.1| GENE 38 39391 - 39627 353 78 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518093|ref|NP_964023.1| 30S ribosomal protein S18 [Lactobacillus johnsonii NCC 533] # 1 78 1 78 78 140 91 2e-32 MVQQRRTTHRRRKVDFISANHIDYIDYKDVDLLKRFISERGKILPRRVTGTSAKNQRMLT VAIKRARVMGLLPFVSED >gi|308169884|gb|AEHR01000021.1| GENE 39 39656 - 40111 655 151 aa, chain - ## HITS:1 COG:BH4049 KEGG:ns NR:ns ## COG: BH4049 COG0629 # Protein_GI_number: 15616611 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Bacillus halodurans # 1 151 1 168 168 174 57.0 5e-44 MINNVVLVGRLTRDPDLRTTESGISVATFTLAVDRQFSNSQGEREADFINCVVWRKAAEN LANFTSKGSLIGVQGRIQTRSYDNKEGQRVYVTEVVVDSFSFLESRRSRENKPVASNNFS TTNNVPTEEPKQDPFADTGKTIEISEDDLPF >gi|308169884|gb|AEHR01000021.1| GENE 40 40147 - 40443 466 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42518091|ref|NP_964021.1| 30S ribosomal protein S6 [Lactobacillus johnsonii NCC 533] # 1 98 1 98 98 184 90 2e-45 MAKTKYEITYIIKPDIDEDSKKALIERFDKVVTDNGAQELESKDWGKRHFAYEIEKYREG TYHILTFVAENAAAVDEFGRLSRIDGQILRSMTVKLDK >gi|308169884|gb|AEHR01000021.1| GENE 41 40622 - 43069 2552 815 aa, chain - ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 6 815 2 812 822 1002 60.0 0 MDNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVF PDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPA AMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGM TTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKG NIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQK GLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQE NIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDR QAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRF GDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIRGMGV QNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLEKGEKVQ AVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDELSNVLLTDGSQ NILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYVVGSSIVDDHSEVLVISEKGY GKRTLASEYPIKSRGCMGVKTANVTEKNGPLVGVTVVDGSEDLMLITDAGVIIRLEVDGV SQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSEI >gi|308169884|gb|AEHR01000021.1| GENE 42 43079 - 44146 1122 355 aa, chain - ## HITS:1 COG:lin0006 KEGG:ns NR:ns ## COG: lin0006 COG0187 # Protein_GI_number: 16799085 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 2 354 293 645 646 514 73.0 1e-146 MHESGFKTALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTK LGNSDARAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLE IANLPGKLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD RILANQEIRTIFTALGTGFGADFDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKP MIKAGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQ LWETTMNPENRRLDRVDPEDAEDAEEAFEMLMGNEVGPRREFIEQNAKYVENLDA >gi|308169884|gb|AEHR01000021.1| GENE 43 44317 - 45039 826 240 aa, chain - ## HITS:1 COG:BS_gyrB KEGG:ns NR:ns ## COG: BS_gyrB COG0187 # Protein_GI_number: 16077074 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Bacillus subtilis # 15 232 2 217 638 254 59.0 1e-67 MADNKNIQDQALNFEKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTSIQGLHHLVWEIID NSIDEKLAGFATKIEITVNEDGSVTVEDDGRGIPVDIQKKTGRSALETVFTVLHAGGKFG GGGYKVSGGLHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQH GTIVRFYPDPDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKEKIQQKKIFIILKVV >gi|308169884|gb|AEHR01000021.1| GENE 44 45040 - 46161 836 373 aa, chain - ## HITS:1 COG:BH0004 KEGG:ns NR:ns ## COG: BH0004 COG1195 # Protein_GI_number: 15612567 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Bacillus halodurans # 1 372 1 370 371 334 47.0 2e-91 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL IKFNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED LSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV LTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEKDSVEK IYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQVFINKKSAQEYASQGQQRSIVLSIKLAE IDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGKTQTFITTTDINSISQEMIKIPR IFRIVSGTVSEEK >gi|308169884|gb|AEHR01000021.1| GENE 45 46165 - 46410 128 81 aa, chain - ## HITS:1 COG:BH0003 KEGG:ns NR:ns ## COG: BH0003 COG2501 # Protein_GI_number: 15612566 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 17 71 7 61 73 65 50.0 3e-11 MSRVLCKWGGFIKDFVINGEFITLAQFLKEESIISSGGQAKWYLNENPVMLNGVLENRRG KKIHPGDQIVINKNLYNFIMG >gi|308169884|gb|AEHR01000021.1| GENE 46 46612 - 47754 1227 380 aa, chain - ## HITS:1 COG:SA0002 KEGG:ns NR:ns ## COG: SA0002 COG0592 # Protein_GI_number: 15925707 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Staphylococcus aureus N315 # 5 380 2 377 377 307 45.0 2e-83 MEGHMKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKID IPKSDDLHIESTGSIVLPARFFSEIIKKLPGKDFSFEVKDSFQTKIMSENSDFTINGLDA DNYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEINAIATD SHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANINF YTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQV IKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRVSITDSIVIKFTKPLRPFV VVPKDSDEKFIQLITPVRTF >gi|308169884|gb|AEHR01000021.1| GENE 47 47914 - 49233 1232 439 aa, chain - ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 437 15 447 449 411 50.0 1e-114 MKKRYSEVAYNAWFKNTKPLSFDKNSKQMTISVESPVSKGYWEKNLASQLIQEAYAYTDM EIIPIFKIAGDTNSERFVVHKTPKKQEPVIENNHNEFAKDLQLNSKYTFDTFVQGEGNKL AAGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQMLTEKANAKIVYIQSETFVND FINSIKNKTQDLFREKYRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSD RLPNEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRKKAEADGLGIDDNTLDYVASQV DTNIRELEGALVKVQAHATIEREDINLNLAKEALADLKLVQKTRGLEISKIQEVVANYFQ TSTTELKGKKRVKQIVVPRQIAMYLSRKLTDSSLPKIGQEFGGKDHTTVMHAYEKIERSL KTDSEIKSAVYDLKAMLNH >gi|308169884|gb|AEHR01000021.1| GENE 48 49754 - 49894 230 46 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227521920|ref|ZP_03951969.1| ribosomal protein L34 [Lactobacillus gasseri JV-V03] # 1 46 1 46 46 93 97 4e-18 MTTKRTYQPKKRHRSRVHGFMKRMATANGRKVLARRRKKGRKVLSA >gi|308169884|gb|AEHR01000021.1| GENE 49 49944 - 50315 328 123 aa, chain + ## HITS:1 COG:L131443 KEGG:ns NR:ns ## COG: L131443 COG0594 # Protein_GI_number: 15672110 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Lactococcus lactis # 1 113 3 112 117 102 53.0 1e-22 MRKSYRVKSEKDFQLVFETGQSMANKAFVLYQLDKVNQPHFRVGISVGKKVGHNAVLRNR IKRCIRAAITEDKHMIKKDVDFLVIARPYVKDLDMKCIKANLEHVMKLSNLLISDIPSQV EEN >gi|308169884|gb|AEHR01000021.1| GENE 50 50317 - 51192 784 291 aa, chain + ## HITS:1 COG:lin2986 KEGG:ns NR:ns ## COG: lin2986 COG0706 # Protein_GI_number: 16802044 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Listeria innocua # 20 291 11 287 287 216 42.0 3e-56 MSDFLSKKNLKKIIVIATILLISLTITGCVSTSSNGSVPPLSNNSGSFWDRYILYYISSF ILWLATILHNAYGWSIVVFTIIVRVVLLPLNAISIKSMAKQQSLQPEMEALRKKYSDRDA ETRRKLQEETSKLYKESGVNPYLGCLPMLIQMPIMIALWQAILRTPELQNGRFLWMDLGH PDPYMVMPILAAIFTFIASYIGQLSQAKSSNNAMTKGMTYVMPVFIGVMACSLQSALSLY WVISNLFQAIQTFFLQNPIKYYRELKLKQLQEKERKAKYRKIYKKFGRKIK >gi|308169884|gb|AEHR01000021.1| GENE 51 51292 - 52677 1688 461 aa, chain + ## HITS:1 COG:SPy1071 KEGG:ns NR:ns ## COG: SPy1071 COG0486 # Protein_GI_number: 15675063 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 2 461 1 458 458 466 56.0 1e-131 MVQVLTQYDTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGANLNKVASHTIHYGHII DYANKDVVDEVLATVMLAPKTFTRENTVEVSCHGGLLVTEKILQLILDNGARMATPGEFT KRAFINGRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHEEV NIDYPEYDMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSL LNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRA ITESDLVLLLINSSEELTEEDQKLLKLTQDKKRIVILNKADQVAKITKKDIQKITDSPIV TISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLRKAKQSLIEAIEAINDN MPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK >gi|308169884|gb|AEHR01000021.1| GENE 52 52689 - 54581 1915 630 aa, chain + ## HITS:1 COG:lin2942 KEGG:ns NR:ns ## COG: lin2942 COG0445 # Protein_GI_number: 16802001 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Listeria innocua # 1 629 1 627 629 824 65.0 0 MKTYNSNEYDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGT VVREVDALGGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNL TLRQGMADELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSL PSIKLAENLEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLK DQLSCYMTYTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFL EPEGWKTREIYVGDFSTSMPEEVQLKMLHSVVGLEKAEMMRPGYAIEYDVIEPWQLKHTL ETKNIRHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFVLGRDEAYIGVLIDDL VTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLRKKEAIATTM KNIKSITIHPTEEVQNYLKDIKQDALNGAVNGADFLKRPRVTFDAIEKLTGKKLAADRYV KEQVEIALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESI AQAERISGVNPADLAVLTAYIQQGRIAKIK >gi|308169884|gb|AEHR01000021.1| GENE 53 54670 - 56847 1970 725 aa, chain - ## HITS:1 COG:SPy0427 KEGG:ns NR:ns ## COG: SPy0427 COG0209 # Protein_GI_number: 15674554 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 2 725 3 726 726 1048 70.0 0 MKNNETYISLNALTEFKDENGHFNFEADKKAVKAYIDEKINPNTKKFKSFRERLNFLIDN DYYDKDLLAKYNIEFIEKLTKKAYDQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYEDR VVMNALFLADGDEDFATSLLMDIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMES ISRSITTSLQLSKRGGGVALCLTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLG QRQGAGAVYLHAHHPEILKFLDTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALF SPYDIMREYGKPMSDISITKEYDKLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFE DTVNDRNPNKKEGRIVMSNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD DSEHFEHLVANSIRALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYN SPEAVDFTDMFFYATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTA TIKDLLNKYHFYIPSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVA PVETRKEGMVGRIYVPAYKIDNNNYKYYQKGAYEVGPAAIIDIVAAAQKHVDQAISLTLF MTDKATTRDLNKAYIYAFKKKCATIYYVRVRQEVLEGSENLAADEVIKTDKFKCTGSKEC QVCML >gi|308169884|gb|AEHR01000021.1| GENE 54 56837 - 57091 188 84 aa, chain - ## HITS:1 COG:MYPU_5400 KEGG:ns NR:ns ## COG: MYPU_5400 COG1780 # Protein_GI_number: 15829011 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Mycoplasma pulmonis # 2 78 75 150 151 114 74.0 4e-26 MHGAVTKQVIQFLNDKDNRSYCRGVISSGNTNFGDQFAVAGPIISKKLHVPFLYQFELLG TMEDVENVLNILKTERWKQNNDEK >gi|308169884|gb|AEHR01000021.1| GENE 55 57263 - 58276 1018 337 aa, chain - ## HITS:1 COG:SPy0425 KEGG:ns NR:ns ## COG: SPy0425 COG0208 # Protein_GI_number: 15674552 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 337 1 337 337 566 78.0 1e-161 MSESYYDHSQAPVHFAYHDNGLNMRSINWNKIDDDKDLEVWNRVTQNFWLPEKIPVSNDL PSWNSLSKDWQQLITRTFTGLTLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHA RSYGTIFSTLCNSDQIDEAHNWVINNEALQARAKALIPYYTGNDPLKSKVAAAMMPGFLL YGGFYLPFYLSSRNKLPNTADIIRLILRDKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFV FALLYKLIDLEKAYLRELYKGFDIAEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIAPEV LAQLSARADENHDFFSGNGSSYVMGVTEETTDDDWEF >gi|308169884|gb|AEHR01000021.1| GENE 56 58528 - 59364 728 278 aa, chain - ## HITS:1 COG:SP0742 KEGG:ns NR:ns ## COG: SP0742 COG1307 # Protein_GI_number: 15900637 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 277 1 279 281 202 35.0 4e-52 MIKKIITDSGANILSSTILGQKHINVPLSIIIDNNIWLDDNNINIDNFIQAIINTKQKTS TACPSIASWLQAFAGADEIYVVTITSGLSATYDSAIQAANLYKEKYPHVKIEIFDSLSAG PQMRMIAERIAQDLNKNLTFDEVIEDVKQYQQTLQMVFILKDMKNLANNGRINPTIAKLS KLVNLNIIGTVTDAGTFALISKARGMKKCYPKLLQAMIDQGYNGGKVEIDHVNNLSEAQL VASTITSTFPNADISFSLCTALCTFYAENGGILVSFEK >gi|308169884|gb|AEHR01000021.1| GENE 57 59488 - 60009 376 173 aa, chain + ## HITS:1 COG:no KEGG:LAF_0389 NR:ns ## KEGG: LAF_0389 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 1 163 2 164 171 163 50.0 2e-39 MKTTESELVKDIISFRLPRYDELPVMGLYLEQVANYLNEYLHAISETPITSSMISNYVKH KIISKPIKKLYDRDQIASLIFIALAKNILQLNDLKKGLVIQQGSYSTKVAYDYFCVELEN NLQYVFGLKDENKMEDNAPSPEKIMLHNMILTISYKIYLTKYFELYDITKNKG >gi|308169884|gb|AEHR01000021.1| GENE 58 60015 - 60707 546 230 aa, chain + ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 3 217 4 217 235 118 33.0 8e-27 MIYKQIIFDIDDTIIDFDNTEYVALNSLFKFHGWNITPEIRKNYHAYNQGLWRLHEQGKL TYEELSEICFRDFIKREYDIDVNGKQIMAEYRHYFGNTHKLIPGAKEALQYFKNQGYYLA ALSNGETFMQKKRLKLANVAQYFDLIITSQEAQASKPNPAIFDYFFSRSKVSVNQSLLFG DGLSSDILGATNYGLDCVWFNHCHRKNLLRLTPLLEVDTYSDFIKYCKNH >gi|308169884|gb|AEHR01000021.1| GENE 59 60727 - 61017 377 96 aa, chain + ## HITS:1 COG:SP1845 KEGG:ns NR:ns ## COG: SP1845 COG0708 # Protein_GI_number: 15901674 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pneumoniae TIGR4 # 1 91 1 91 275 122 65.0 2e-28 MLFISWNIDSLNAALTGDSDRANETRSVLNKIKKANPDVVAIQETKLRANGPTKKHCDIL ADIFEDYQYVWRSSQEPARKSYAGTMFLYKKITIHK >gi|308169884|gb|AEHR01000021.1| GENE 60 61047 - 61553 543 168 aa, chain + ## HITS:1 COG:SP1845 KEGG:ns NR:ns ## COG: SP1845 COG0708 # Protein_GI_number: 15901674 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pneumoniae TIGR4 # 1 168 108 275 275 242 64.0 2e-64 MDQEGRIITLEFDTFYLTQVYTPNSGNELKRLADREIWDTKYQEYLAKLDQNKPVIASGD YNVAHQEIDLKHPETNHHNAGFTDEERKGFSKLLSLGFIDTFRYINGDITDVYSWWSQRI RTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDRKDHCPILLKIDL >gi|308169884|gb|AEHR01000021.1| GENE 61 61671 - 63122 1478 483 aa, chain + ## HITS:1 COG:ECs2097 KEGG:ns NR:ns ## COG: ECs2097 COG0531 # Protein_GI_number: 15831351 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 11 480 4 472 511 285 36.0 1e-76 MDNTAVEDNELSQNIKYNRLTGLKLFAMTSSMVISVSELVPFGKTGPTAIFYLLLAGLIW FIPITKMAGEMASIDGWNKGGIFTWVKETLGEKTGWTALFYQWIHITIGMNVMMYIIIGS VSIILNKPYLNTTPCIRFLLMMIILWSITLVEMVGMKKIGRIAEWCFGLGIAMPVILLIL CFFVYLLEGKNVYFHINLDNVFPHKFDGNSLVVFVPFILAFCGGEASAPHVKYLEKPKQY SKVMLGLACVAICFDLLGSMAIGMTVPKELHTNNVTGFVETFGHMLNSINLPGDLLMKII GALLACGIIGQLGNWLAGPSQGMFEAAKEGYLPAFFTKSTKRDVPMRLIVLQSLIVTLGA IAVTFTSGTNANFAFDVSMAATTVQYLMMYIILLISYIVLKLRHAKLPRTYYMTTSPIKG ISIALVALCITLIAFVLTFIPTRETPEHLRNMYVLIMFIMCAIVTILPLIVYHFRHLYGK KRL >gi|308169884|gb|AEHR01000021.1| GENE 62 63214 - 64566 1077 450 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 431 1 431 449 310 42.0 4e-84 MIQKLNLRQYLVIASMIFALFFGAGNLIFPLHLGQLAGRNWLIATIGFLITGVLLPLFSV LAIAITKTDDVYGIAKPVSNLFATCFMILIHLTLGIMCASPRTASVSYSVGIAPLLPSKW HNIGLVIFTAIYFILTFIIAYNAGNILENLGKILNPIFLVLLFLVIIIALFKPLGNPADF SATASYAHSAGVNGFLEGYNTIDALAGIAFGVSVISAVKSMGVTEKNEVAKITAKSGFIA MTMIGIIYFLLILLGAMSLGKFKVSAEGGKAFSQIVTYYGGTLGQIVLASLVTLTCLTTA VGLVSSFAQDFHSHFGGLKYRKWLAITCFASFMTANLGLELIIKWTFAILMFLYPIAMVL IILALFSPLFKGDHVVYKVSVVLTIIPAFMDLIAHLPAPISETSFCKMIIDIRLKYFPLS DIGLSWVFPTLLGIIIATLVHVWRRKNNKI >gi|308169884|gb|AEHR01000021.1| GENE 63 64616 - 65527 1227 303 aa, chain + ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 12 293 16 290 296 146 33.0 5e-35 MRNGTKIITLDNGYHLWTNTQGQGKIHLLALHGGPGGNHEYWEDAAVQLKKQGLDVQVTM YDQLGSLYSDQPDYSDPEIAKKYLTYEYFLDEVEEVRQKLDIDNFYLIGQSWGGLLVQEY AVKYGKHLKGAIISSMVDEIDDYVKAVNRRRQEVLPQTEIDFMHQCETNNDYDNDRYQAD VQILNINFVDRKQPSKLYHLHDLGGTAVYNVFQGDNEFVITGKLKDWHFRDQLKNIKVPT LLTFGENETMPLDTAKIMQKEIPNSRLVTTPNGGHHHMVDNPDVYYKHLADFIREVESGE FNK >gi|308169884|gb|AEHR01000021.1| GENE 64 65718 - 65822 94 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNLKKTLCVTLATVTLGTILSSVWGAECGWNELR >gi|308169884|gb|AEHR01000021.1| GENE 65 65809 - 66060 224 83 aa, chain + ## HITS:1 COG:no KEGG:Ldb0080 NR:ns ## KEGG: Ldb0080 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 5 83 12 90 94 82 58.0 7e-15 MSYAKKIIKWILSLLLIIIVGITIITVYSAYYSFGTMIFGVHTESAIKDFWSTEFLLGAV YIIVVITIAVVTGVTRLYKKHLK >gi|308169884|gb|AEHR01000021.1| GENE 66 66269 - 66556 179 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809768|ref|ZP_07703622.1| ## NR: gi|309809768|ref|ZP_07703622.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF0523_1280 [Lactobacillus iners UPII 60-B] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF0523_1280 [Lactobacillus iners UPII 60-B] # 1 95 1 95 95 180 100.0 3e-44 MFGKKNKVEEKIIADICEILKDPNLKSEEQEALTRVKNRLEKGEYTQRVLNNFLSQVRPL ALQSKLSPSVDKFYTDIINNAYKGTSWAGMMFMRF >gi|308169884|gb|AEHR01000021.1| GENE 67 66807 - 68132 1377 441 aa, chain + ## HITS:1 COG:SPCC1672.03c KEGG:ns NR:ns ## COG: SPCC1672.03c COG0402 # Protein_GI_number: 19075374 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Schizosaccharomyces pombe # 50 437 57 444 527 268 34.0 1e-71 MIEGRICTPETVDKIGCYGNALVCVNQQGLIASVLFPNNSQYGEIKQTAISQGDYHQLAT DEYLLPGYVDLHVHAPQWPQAGLALDLPLADWLDHYTFPLEQKCLDLDYSKTIYNSLVKE LLSQGTTTALMFGTIYNDSNIILAKACLEYGLRGFIGQVAMDNPDQTPADYRNQSAQDAV DSTELFIKQLQKLSNDADRVVPVITPRFVPSCSDACLQGLGQLANKYHVPVQTHVSESSW EHGYVLDRFKATDTHVLDQFGLLTDRTILMHATHLTDDDMDLLAKREAALAHCPISNAYF GNGVMRVKEILAKQIKLGLGTDISGGYSSGIYHNIRQAVISSRMLEDGVDTTKQATTRGV ANSRINIATAFYMATVGGAEALHLKTGRIKEGYKADLQVVKSHPSVITLSDEQMIERILY QTQQSDIKQVYVDGNLVYCKD >gi|308169884|gb|AEHR01000021.1| GENE 68 68156 - 69493 313 445 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 12 437 8 420 447 125 26 1e-27 MAKRTSLLIGPDEKVSKFEATILGLQHVLAMDVYVPPIILAGILAMSSADAMGLLQATFL AAGVGTLLQTVIFMKIPVSQGPSFVPLTAAAGIVLANGGLHGKGIATLLGSSLIGSIFLI LLGLTGVFHKIINKFVPPVVGGTIITCVGLSLIPAALKDNIFAAPGNIFQNIELASITAV VLIFCIAMSLRIPKLEKIFKTSSIVVALLVGTSVAATMGRFNWSQVASAPLFSFPQRTIL HWGLDFSLTPIITFIIIYIILTAETTGTWFAMSAVTGCDISRKQWNNGIIGEGASCMCST LLGATPVTGYSTNAGIVSITGVASKHVFISAGIWFIILGFFSKLSAFLATVPAPVIGGVF AIITVTIMLNGLKVIRNVETEESDLYVIGIPIVLTMALLLVPKKVVAVTPQLLQYLLGSP IAVAAIVAVILKLIMPRYRGRLATK >gi|308169884|gb|AEHR01000021.1| GENE 69 69825 - 70529 1113 234 aa, chain + ## HITS:1 COG:BS_yycF KEGG:ns NR:ns ## COG: BS_yycF COG0745 # Protein_GI_number: 16081093 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 234 1 235 235 322 70.0 4e-88 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD GLEVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR EITQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREH LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVKNPTDE >gi|308169884|gb|AEHR01000021.1| GENE 70 70571 - 72409 1832 612 aa, chain + ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 8 610 7 610 610 468 42.0 1e-131 MKRIRKPFTSINAKIAIIFMLLLLATIEIVGAYFTRQLEQNSIESFETSIQIPNLISNQI ATQLNKNNAKKANKQLNRIVSNYSNDAINDITVVDSKSVIRSVSNVNDQGTIGQRATNSD IKKVLTSGRQISKIINDNGKYMIQISPLNVGNGPNTIVGVIVVKAGMQSVFNNIHRVSFL FLTASLVAATLGAGVALVIARAITKPIEEMKDQALRISNGDYSGHVKVYANDEMGELARA FNILSVRIERSQEVSDSERRRLDNVLMHMTDGVIATDRHGNITIINETALNFLDKTENEV KGEPITQLLGLKEVTIQDLMSTQQELIVTANVNTHDELILHADFSLIQRVTGFVSGLICV LHDITEQQKNENEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRK DLSRIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYE KMSEEGDMWDEV >gi|308169884|gb|AEHR01000021.1| GENE 71 72399 - 73562 1232 387 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0066 NR:ns ## KEGG: LGAS_0066 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 385 33 417 474 400 55.0 1e-110 MKFSDKCQRIVLRISLSVMVLLSIILSGYIWGSDTRFSRMEQDSNQPAIKKNVGQKSLRE IYTPTQVFYYRDKQLYQAYDAKRNLTLEFSKFTKKLEGHKINKIKSNSTFYRQLLHDEKY FQLTFPDQITISLFLPRANKYLDGEFNRIFVSTKDKKYLYLGDDRNNTLYRVYANVSFKN LYKHIQKAASQIPISLEKLKDGFCVSYNKDQQMAIYSYLTYKETDAYFVYKLLDSGNPTQ RNADDYIAYYNGIYQRLVAYKKTHNYEFVDYQQNKIPNTTTKMLTDSLFYVRKICLNEPD LRFFDASNNTISYQKFVEEYPVFLPEDNNVRAKVTFTRSCMQINFNSLDLRIPIPTNGAK QELQATDKIIDKLLQAGYKKSYLEKSL >gi|308169884|gb|AEHR01000021.1| GENE 72 73722 - 74558 776 278 aa, chain + ## HITS:1 COG:lin0318 KEGG:ns NR:ns ## COG: lin0318 COG4853 # Protein_GI_number: 16799395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 274 1 263 279 74 25.0 2e-13 MDFKRIECIFLLVFVAINIFLFVEIFQAPKLLNGGHTVNVQNNDLKNEIIADNITLPKIS DEQGEGYYLATKEGHSWISKAKEQLSNNCTIVSSKDTDAIIVNLNKPVDLGNNKNKTLSN IKSFVLNTRNVYQGGKYKYIDSTADKSTYIFAQKSKYGLVTENHSQLSIVVKNNHIVSYM QYYVAPLNTLREKQATISSQAAIDALYTYSELPNNSHVLWISFVYSKLITTRGSIIFIPT WLVAIQNSNNKFTIFKRVNAFSGNVMTIDNEEDKGYIK >gi|308169884|gb|AEHR01000021.1| GENE 73 74583 - 75380 674 265 aa, chain + ## HITS:1 COG:lin0319 KEGG:ns NR:ns ## COG: lin0319 COG1235 # Protein_GI_number: 16799396 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Listeria innocua # 1 256 15 267 276 231 47.0 1e-60 MRISILSSGSAGNTTLIESEHHKVLLDAGLSGKKIANLLAQRGVDIKDIDMVFLSHDHTD HSGGLGVLMRRYSQLNAYANEGTWKYLQESNKIGKIPKEQINIFAPETTKIFDDLEVYSF ATSHDAAEPQYYVFCSGGKRFACLTDTGYVSSSVKMQIEAADAYLMEFNYDDMMLRNGPY SWSLKQRILSDVGHLSNEQAVEALGDVVSRETKYIFLAHISQHNNDQLLVKKSALQLFEQ RDADVDSDVQFMTTAPMKPSKFIEL >gi|308169884|gb|AEHR01000021.1| GENE 74 75416 - 76588 1317 390 aa, chain + ## HITS:1 COG:SP2239 KEGG:ns NR:ns ## COG: SP2239 COG0265 # Protein_GI_number: 15902042 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Streptococcus pneumoniae TIGR4 # 9 384 13 379 393 262 44.0 1e-69 MKDKNNINQILKTILISFVSGMLGGLLVIYVVGYRPNNTSINKYESPKLVYDQSKHAGLM TGAFNMVKDSVVSVINLQKTRKNNLFTDIFGSKNDKDTLQTYSEGSGVIYYKNLNYAYIA TNNHVVADSDQLQVILSDGRKIAAQKVGTDPETDLAVLKVNSKYINQVAKFASSKNLVPG QPVIAVGSPLGSQYATSVTQGIISAKSRVVNVVNEQGQVTNEATVIQTDAAINPGNSGGP LVNEQGQVIGINSMKLSRSGDGTAIEGMGFAIPSDEVVNILNQLVKNGKIVRPKLGIRVL DVTDLTRKDKKRIHLPNNIQEGVAVFSVDSGSSAAKAGIKAKDVIVQIDNDKIDSVASLH SKLYKHKIGDKIPIKVIRAGKYVTVKAILQ >gi|308169884|gb|AEHR01000021.1| GENE 75 77140 - 77619 583 159 aa, chain + ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 1 159 159 194 64.0 8e-50 MNIKIVCVGKLKEKYFKDGIAEYLKRMDRYAKVEIVQVPDEKAPEKLSDAEMEKVKEIEG NRILSKIKDKEYVFVTAIKGCEYTSENFAQKISDVTTYGHSDITFVIGGSLGTSNAVNKR ADELISFGKFTMPHQLMRLVLIEQIYRAFMINIGSPYHK >gi|308169884|gb|AEHR01000021.1| GENE 76 77622 - 78278 546 218 aa, chain - ## HITS:1 COG:no KEGG:LJ0072 NR:ns ## KEGG: LJ0072 # Name: not_defined # Def: ABC transporter permease component # Organism: L.johnsonii # Pathway: ABC transporters [PATH:ljo02010] # 1 216 1 216 217 216 56.0 6e-55 MNPSLKLLLLCLLTIEITIIPNLIANLCLIVGSLILLMINHINYKKLCYFTIVPLSACIS VFFTIYFYAPGHNLTYALTLISRIYAFALSGAYFATSTDNYTLAKSLEQNAHLPSKFAYG SLAAFNLLPKIYEEVKRIRIAGQMRGLFLSFWSPKLYFKAIISAMTWADSLSQGMASHGY CEEKSRSVIIPILVTKKDWLLFFSILLLFQPILFIFHI >gi|308169884|gb|AEHR01000021.1| GENE 77 78292 - 79665 173 457 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 261 442 28 208 309 71 29 2e-11 MYSQNIIINNLSFNYDVNTILKNINLTIPRGGFSLIIGPNGCGKSTLLRLIAGLYPQYGG RILKGNIINPFKNWGMIFQEPDKQFTMATPRQEFIFTLENIHCSKEKAYTQINNAVKLTN IEELLDRPFINLSGGEKQRVALAIIMAMDPPLILLDEPFACCDMTTRHLLIKQLALLKQA GKTILITDHNLAGYQNICDDIFGFINEKFINYDNEQKRALFDQVKPTLNKHFEMVTSSSN ADFSLKKFTLKNPAKFLINQVTIDIPKGKGILLTGENGSGKTSLFKAMTKLIDYEGNLLF EHKEIRKWSFRKYLSKVNQAFQNADDQFLMITVQEELELSQLKCTNSLFDEQMLQHYLSI LKLNDHLQQTVYSLSGGQKKRLQLLLMIMANPQVLLLDEPFTGLDCESITIFINLLKEYF IDKNKTIIIISHNLDQMDQLCQYHLQLQNQNLKFITN >gi|308169884|gb|AEHR01000021.1| GENE 78 79640 - 80188 503 182 aa, chain - ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 170 1 176 186 113 39.0 2e-25 MTSKLHIRDIIFIALIAVMFGGIYILSNQLYNALVFLGPLANDICMGLWCMAGPLAGFVV KLPGTSFLGELLSAAAEGLFGGQWGISTLISGIVQGIGSELGFAAFIYRKYNIFTLIVSA TINTFITFGWDFMKNGYNKLPLNTNLLCLGVRWISMIVFCTIIVNSIVKLLDKAHVLTKY NH >gi|308169884|gb|AEHR01000021.1| GENE 79 80393 - 81286 773 297 aa, chain - ## HITS:1 COG:SPy0331 KEGG:ns NR:ns ## COG: SPy0331 COG0501 # Protein_GI_number: 15674492 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Streptococcus pyogenes M1 GAS # 1 297 1 298 298 261 47.0 1e-69 MLYQQITKNKRKTVILLAIFVIILAIIGAVSGKIFYNSPIEGIMWSIFASVVYLLIGLAN PASMIMRMNHAIEIKEQDDPELWHVVEDMAMVAQVPMPRVFIIEDDSPNAFATGKNPQNS CIAVTMGLRKMLTREELEGVIGHEISHIKNYDILVSTVAIVLVAVISFIGNLTCNVFLYF GNIFSDKDDDRNANWGWLIYLFMRIFSSLLVFSATLVQFALSRNREYLADAGSVELTRNP KGLISALTKISTSAPMTVADKSSASLYFENPFHKHGLTHLFDTHPTTKKRIERLEKM >gi|308169884|gb|AEHR01000021.1| GENE 80 81289 - 81840 511 183 aa, chain - ## HITS:1 COG:lin0961 KEGG:ns NR:ns ## COG: lin0961 COG1704 # Protein_GI_number: 16800030 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 6 183 8 185 185 196 54.0 2e-50 MILAIIIILIILIVLYIAIYNGLQRAKVNIEESWSQIDVQLKRRNDLIPNLVETVKGYAK HESETLEKVIQLRNQLVQIPTGNHQEQMQVSNQLTDSLKSIFALSESYPNLKANENFAQL QEELVNTENKLAYSRQLYNSTVSFFNKKILVFPSNIVASIHGFTKQEFLATPSEERNVPK VKF >gi|308169884|gb|AEHR01000021.1| GENE 81 81856 - 82962 1020 368 aa, chain - ## HITS:1 COG:L20481 KEGG:ns NR:ns ## COG: L20481 COG0471 # Protein_GI_number: 15673760 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Lactococcus lactis # 35 367 49 391 392 125 29.0 1e-28 MTVIRNIFKDRILQITVIITILSLCFARPRLGDINTHTLFSILAMLTIIQIFSYLHVLDV LAYKLTASASNTRRLTVIFTFLSVISAMFLTNDITVLTLIPLYLTIARRYKLPEILPVTL IGMGANIGAAFTPWGNPHNIYIVNRYTVTPIQFFKWSLPLLSVSLILLIIMLMFVKNTPI PSLPKEDIRISIRPMILTIVVSIFFFFGIFNVVPVYVPAILAILLTIFINKTILLHIDYA LLLTFTCFFVFISDIQQIPFIVNEISKAMSNEHLVYLTSILSSQCISNVPSTILIGKFTN YAEALFLGSNIGGFGTLVGSMANMLVFKSFLEHGTISRKKFFCMFSLLQFTGLIVLMILG WLVLYFVI >gi|308169884|gb|AEHR01000021.1| GENE 82 82862 - 83086 74 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSPNLGLAKQRLKIVIITVICKIRSLNIFLMTVIRGSPLKNYTCLFCTFYTGISFDKKEA HTYTSIVSVFLIFR >gi|308169884|gb|AEHR01000021.1| GENE 83 83170 - 83541 354 123 aa, chain + ## HITS:1 COG:no KEGG:FI9785_136 NR:ns ## KEGG: FI9785_136 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 116 1 116 136 114 56.0 2e-24 MLIKKIISLNIKTAAADLLQNKIFDKSVIILALNDGSNKYSTVGGTCTIGANFQLVILSK YDSQYDIEIDNNMNIPMYTSQDELQYLTKGLTLGAKAGVLFLSSDEGIIDSAVSINNKTC HTN >gi|308169884|gb|AEHR01000021.1| GENE 84 83598 - 83732 209 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSRNIHTGINPHRRPRNKDNSKERVAHAAKVVAFLNKAKADENK >gi|308169884|gb|AEHR01000021.1| GENE 85 83846 - 84493 810 215 aa, chain + ## HITS:1 COG:lin2634 KEGG:ns NR:ns ## COG: lin2634 COG1896 # Protein_GI_number: 16801696 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Listeria innocua # 1 191 1 190 215 228 58.0 6e-60 MGLHAYIQGFSSLESIDRAPGYFKYQHHSVAAHCFRTAELAQIMGDIEEVIGGQKINWKA LYEKSLNHDYTERFIGDIKTPVKYATPELRKMIGEVEETMTAKFIKDEIPAEFQDIYKKR LSEAKDDTLEGQILSICDKLDLLYEAYGEIELGNPSFVYMQMFKESLATIKTYDNLACVK YFIQKILPDLFKGDFAGKDKMERIAFSILLMGDEQ >gi|308169884|gb|AEHR01000021.1| GENE 86 84566 - 85414 673 282 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0084 NR:ns ## KEGG: LGAS_0084 # Name: not_defined # Def: restriction endonuclease # Organism: L.gasseri # Pathway: not_defined # 2 267 26 294 309 275 54.0 2e-72 MKLFSVCDICQLRGVDPLKYENKVVQKLSEICMFNFCGKVTKAIVATKYTTFVIPKYKRA YEAFIQDYDCNDVAIDQINRNTFYQFVIKSEKGELPSPELTNTFEENLLQLGIKADFSFN KIDYIDREYIRNKYKYRCQYCGRRGTSVDHKDPVCFSHDNGLDNLILSCSECNKIKGNMS YQSFCKMNAKIKNINKKLVKYETYLNCLHELFDENKRYIDGQVHLRGVIRDTEIDAMRKQ NKSLHDAIDSLQSDYDKLRLIRKNYFEVNDNITNAEKTDKLF >gi|308169884|gb|AEHR01000021.1| GENE 87 85592 - 87295 208 567 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 348 557 16 231 245 84 28 2e-15 MQTTKDYVKLFFKQNKFVAFVSALVFIILSTTYSIVSWIMQVIFDYMAGNSTYSFESILL MLGGYLFVAASLFMVQRSVYPRFLEKAMNQYKEAVIKKLFKKSYSDFLITNSGTYLSVLT NDCERILETYLKNIFEFIQNIIMVVSSLTLMLYYNSLLTIIAIVIAMIPMVCSLLTARSI ATREEQVSKTNESYVSLTKDILNGISVIKSFKVENEAISRYQNKSMQLEHTKKMREQTFT VVSACGTIAYMLTQFGVMVIGAWMIHEHIGTMTAGMILAFINLMNGILQPINALPRIYGG MSGAKKLITKMSDYMSNAKEDTGETIKQPLANIALQDVSYAYDTDHTILKHINLQLQAGK SYAVVGPSGAGKSSLINLLMGYYQNYDGSVHFNNYELKQISKYSLYEKITLMQQSVFIFD ASIWDNITLFKQFPAAEVDRVIHLAGLDHLISQKGRDYQCGENGSHLSGGEKQRIAIARS LLKKSEILLVDEATSALDNETSANVTQSILDLQGILRLVVTHRLDASSLKQYDEILVMKD GALIERGSFDTLMDSKEYFYSLYTISK >gi|308169884|gb|AEHR01000021.1| GENE 88 87357 - 88112 271 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 1 221 1 218 309 108 31 8e-23 MTNSNKKILQIQHLQKKFGNNFVLKDISFDVTQGEILTIIGPSGGGKSTMLRCLNLLEEP YKGIINFHDENILDPSFDRNLYRSKVGMVFQQFNLFNNKNVLQNCMVGQELVLGRSKEEA KRIAIENLKKVGMEPYIEAKPKQLSGGQQQRVAIARAISMNPEILLFDEPTSALDPEMVG EVLNTMNDLAKTGLTMIIVTHEMAFARNISDHVIFMSDGIITEQGQPNEIFNHPQEEKTK KFLRNFKNENL >gi|308169884|gb|AEHR01000021.1| GENE 89 88105 - 89712 1353 535 aa, chain - ## HITS:1 COG:SPy0277_2 KEGG:ns NR:ns ## COG: SPy0277_2 COG0765 # Protein_GI_number: 15674455 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 297 526 7 235 239 265 57.0 2e-70 MKSKINTFMIMILFLCSIITVSFSHTSIVNAKTKEPLKIGMEANYPPYNWTQNTDAHGAV PIDGSKQFANGYDVQIAKIIGKKLHRRVIVEKTVWDGLLPSLTSGKIDLIIAGMSPTSER RKAIDFSIPYRKSTFVLIVNNASNFATATKLTEFKGAKLTAQQGTLHYDLIKQLVGAKRL TAMRDFSVMRQSLASGTIDGYVAEDIEYQSYHRVNPNIVSINLSKMPHFHVNYNDSITSI GVKKGNTKLLNQVNQILKTISDNKREKLMSFAIKQQPQVATTKKTNWFVSIMHRYGKMIL NGVIMTVFLSLIGTIIGFFIGLLVGIIRTIPTPLSKVKYWLLKLINWLLAVYVEIFRGTP MMVQAAVIYYGIAQLWHINLDRTLAALFIISINTGAYLAEVIRGGIISTPKGQFEAASAL GMSHSQKMWHIILPQAVRNCLPSITNEFIVNIKDTSVLSIISVSELFFVGTTVASQTFQF FQTYFIISIVYLILTFSITRIFRLIENKLEGPKNYNLMANQLQVDEPKEGENEND >gi|308169884|gb|AEHR01000021.1| GENE 90 90094 - 91539 1014 481 aa, chain - ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 3 481 13 487 487 424 43.0 1e-118 MANIITLILIVNMIISFYIVFRHQRSVATSWAWLIILLIFPVAGFIIYGFIGRGISKENL FAINKQKHISLDKVNKMQAYSLEKIFSNDTSHKAIQLIKYFNNQKEAPLSKNNAIEIYTD NQSNFQKIFNDMQNAHHTINVEYYSFMNDQLGNKFLNLLIDKAKNGIKVRIIFDPWGSLG TKLSWFKPLIKVGGEVIPFITSQNNIKKYRINYHMHRKIVVIDGKIAWTGGYNIGDQYIG HNKKFGYWRDTNIRLVGPAALLLQERFVMDWNASNDYKHTIKFSDLLFPKCNNDPYNTNH STVQVVNDGPDKEVPYLRNGMIKLMMMAKESIWIQTPYLIPDDPMIATWVTAATSGVDVR IMIPCMPDHIGIYRATEWYANYLMNMGIKIYIYEKGFLHAKTVTIDNDFSTVGSMNQDYR SYLLNFEDEIIIYDNTITKQLKDIFKHDMCECYQLTPTITERWSKWLKFKQAFARMFSPF L >gi|308169884|gb|AEHR01000021.1| GENE 91 91620 - 92270 808 216 aa, chain + ## HITS:1 COG:CC3365 KEGG:ns NR:ns ## COG: CC3365 COG0328 # Protein_GI_number: 16127595 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Caulobacter vibrioides # 61 210 5 139 149 62 33.0 5e-10 MKFYAVRKGRKVGIFNTWQETKENVVNFSGAEYKSFNSMEAAQAYLNADKPVVDDYSDCD IIVYTDGGCRNNGVHKGGHVQKDDKAAWAYTIRCKDEACSIDGVGGERGATNNQMELTGL IEAIEMLIKKNWQNRKIRFCLDSKYVIENIDRLSTWKAAGWRNTSGLVANKDKWQKLEPL LQECTNKSFFWVKGHADSEGNNYVDRKLNEYMDDEM >gi|308169884|gb|AEHR01000021.1| GENE 92 92461 - 92628 118 55 aa, chain - ## HITS:1 COG:L0468 KEGG:ns NR:ns ## COG: L0468 COG2801 # Protein_GI_number: 15672354 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 22 55 203 236 272 57 76.0 9e-09 MGLPNESIHLSFERRKNLPNRSRKGNCHDNAVMENFFGLLKQEIYYAVTYYSYDE Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:42:24 2011 Seq name: gi|308169883|gb|AEHR01000022.1| Lactobacillus iners SPIN 2503V10-D contig00050, whole genome shotgun sequence Length of sequence - 1627 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 1 - 357 91.0 # AE017198 [R:1879440..1882488] # 23S ribosomal RNA # Lactobacillus johnsonii NCC 533 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + LSU_RRNA 424 - 1627 96.0 # AE017198 [R:1879440..1882488] # 23S ribosomal RNA # Lactobacillus johnsonii NCC 533 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:42:35 2011 Seq name: gi|308169839|gb|AEHR01000023.1| Lactobacillus iners SPIN 2503V10-D contig00031, whole genome shotgun sequence Length of sequence - 45277 bp Number of predicted genes - 49, with homology - 46 Number of transcription units - 31, operones - 13 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 8734 9974 ## COG1404 Subtilisin-like serine proteases - Prom 8762 - 8821 8.8 - Term 8865 - 8905 7.0 2 2 Tu 1 . - CDS 8984 - 9370 537 ## COG2314 Predicted membrane protein - Prom 9400 - 9459 7.1 - Term 9472 - 9517 5.2 3 3 Tu 1 . - CDS 9625 - 13428 5511 ## HMPREF9243_0550 LPXTG-motif cell wall anchor domain protein - Prom 13574 - 13633 10.8 - Term 13908 - 13945 1.4 4 4 Op 1 . - CDS 14023 - 14406 356 ## HMPREF0868_0260 hypothetical protein 5 4 Op 2 . - CDS 14451 - 14672 292 ## HMPREF0868_0259 Xre family toxin-antitoxin system antitoxin protein - Prom 14710 - 14769 6.5 - Term 14776 - 14817 7.4 6 5 Op 1 . - CDS 14842 - 16980 2870 ## SERP1011 cell wall associated fibronectin-binding protein - Prom 17174 - 17233 6.1 7 5 Op 2 . - CDS 17271 - 19115 2079 ## HMPREF0868_0951 LPXTG-motif cell wall anchor domain-containing protein - Prom 19207 - 19266 7.3 - Term 19294 - 19337 5.8 8 6 Op 1 . - CDS 19341 - 20405 884 ## COG3274 Uncharacterized protein conserved in bacteria - Prom 20552 - 20611 3.3 - Term 20544 - 20583 -0.9 9 6 Op 2 . - CDS 20621 - 21223 706 ## HMPREF0573_11545 hypothetical protein - Prom 21252 - 21311 8.0 - Term 21791 - 21835 -0.5 10 7 Tu 1 . - CDS 21854 - 22492 506 ## Apre_0680 hypothetical protein - Prom 22563 - 22622 6.2 11 8 Tu 1 . - CDS 22694 - 23281 245 ## FMG_1423 hypothetical protein - Prom 23302 - 23361 8.2 - Term 23494 - 23534 -0.7 12 9 Tu 1 . - CDS 23620 - 24144 622 ## COG0406 Fructose-2,6-bisphosphatase - Prom 24170 - 24229 3.4 13 10 Tu 1 . - CDS 24273 - 24779 220 ## PROTEIN SUPPORTED gi|50365462|ref|YP_053887.1| acetyltransferase of 30S ribosomal protein L7 - Prom 24835 - 24894 3.0 14 11 Op 1 . - CDS 24936 - 25607 497 ## Fisuc_2495 hypothetical protein 15 11 Op 2 . - CDS 25600 - 25932 387 ## HMPREF0868_0167 hypothetical protein 16 11 Op 3 . - CDS 25932 - 26306 309 ## HMPREF0868_0165 hypothetical protein 17 11 Op 4 . - CDS 26306 - 26791 757 ## Fisuc_2497 hypothetical protein - Prom 26836 - 26895 4.9 - Term 26965 - 27008 -0.6 18 12 Op 1 . - CDS 27034 - 27522 332 ## HMPREF0868_0163 toxin-antitoxin system, toxin component family protein 19 12 Op 2 . - CDS 27570 - 27890 318 ## HMPREF0868_0162 DNA-binding helix-turn-helix protein - Prom 27910 - 27969 7.4 - Term 28044 - 28080 1.1 20 13 Op 1 21/0.000 - CDS 28158 - 28973 486 ## COG0477 Permeases of the major facilitator superfamily 21 13 Op 2 . - CDS 28966 - 29469 324 ## COG0477 Permeases of the major facilitator superfamily - Prom 29490 - 29549 5.2 + Prom 29583 - 29642 6.4 22 14 Tu 1 . + CDS 29663 - 29962 298 ## HMPREF0424_0740 hypothetical protein + Term 30129 - 30170 -0.8 23 15 Op 1 . - CDS 30058 - 30675 704 ## HMPREF0424_0739 hypothetical protein 24 15 Op 2 . - CDS 30745 - 31218 254 ## gi|309804456|ref|ZP_07698523.1| hypothetical protein HMPREF9213_0967 - Prom 31253 - 31312 10.2 - Term 31900 - 31933 1.1 25 16 Tu 1 . - CDS 31978 - 33003 835 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 33061 - 33120 13.0 26 17 Op 1 . - CDS 33306 - 33542 181 ## HMPREF0421_21053 hypothetical protein 27 17 Op 2 . - CDS 33514 - 33840 426 ## HMPREF0421_21067 toxin-antitoxin system 28 17 Op 3 3/0.000 - CDS 33903 - 34763 748 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 34792 - 34851 1.8 29 17 Op 4 . - CDS 34867 - 35382 305 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 30 18 Tu 1 . - CDS 35558 - 35752 268 ## HMPREF0868_0396 toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain-containing protein - Prom 35848 - 35907 6.8 + Prom 35618 - 35677 4.0 31 19 Tu 1 . + CDS 35733 - 35927 118 ## + Prom 36155 - 36214 7.1 32 20 Tu 1 . + CDS 36242 - 36547 412 ## HMPREF0421_21051 toxin-antitoxin system 33 21 Tu 1 . - CDS 36601 - 36930 268 ## - Prom 36991 - 37050 3.6 - Term 37054 - 37111 2.1 34 22 Tu 1 . - CDS 37136 - 37768 905 ## HMPREF0421_21058 XRE family transcriptional regulator - Prom 37851 - 37910 5.0 - Term 38122 - 38168 11.0 35 23 Op 1 . - CDS 38349 - 38645 365 ## COG3077 DNA-damage-inducible protein J - Prom 38720 - 38779 2.6 36 23 Op 2 . - CDS 38844 - 39455 773 ## COG4300 Predicted permease, cadmium resistance protein - Term 39827 - 39873 11.0 37 24 Op 1 . - CDS 39902 - 40081 137 ## HMPREF0421_21066 addiction module toxin RelE 38 24 Op 2 . - CDS 40053 - 40349 423 ## COG3077 DNA-damage-inducible protein J - Prom 40386 - 40445 5.8 - Term 40370 - 40405 -0.6 39 25 Tu 1 . - CDS 40479 - 40913 487 ## HMPREF0421_21046 hypothetical protein - Prom 41010 - 41069 7.9 + Prom 40981 - 41040 8.2 40 26 Tu 1 . + CDS 41134 - 41313 94 ## COG1476 Predicted transcriptional regulators + Term 41367 - 41411 6.0 - Term 41428 - 41469 10.2 41 27 Op 1 . - CDS 41508 - 41684 80 ## HMPREF0421_21071 phage integrase family site-specific recombinase 42 27 Op 2 . - CDS 41662 - 41826 61 ## gi|315653817|ref|ZP_07906733.1| conserved hypothetical protein 43 27 Op 3 . - CDS 41883 - 42467 493 ## Apre_1785 hypothetical protein - Prom 42525 - 42584 4.1 + Prom 42464 - 42523 6.8 44 28 Tu 1 . + CDS 42579 - 43085 297 ## + Term 43176 - 43217 2.2 45 29 Op 1 . - CDS 43265 - 43744 603 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 46 29 Op 2 . - CDS 43822 - 44160 331 ## FMG_0970 hypothetical protein - Prom 44227 - 44286 3.5 47 30 Op 1 . - CDS 44335 - 44556 216 ## gi|259501138|ref|ZP_05744040.1| hypothetical protein HMPREF0520_0648 48 30 Op 2 . - CDS 44549 - 44956 519 ## SSA_1628 MutT/NUDIX family protein, putative - Prom 45050 - 45109 10.2 49 31 Tu 1 . - CDS 45111 - 45275 196 ## gi|309804449|ref|ZP_07698516.1| conserved hypothetical protein Predicted protein(s) >gi|308169839|gb|AEHR01000023.1| GENE 1 1 - 8734 9974 2911 aa, chain - ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 2680 2911 813 1026 1052 84 34.0 3e-15 MFGKNNKYMRDLKQREKVTYYGIRKFSVGVVSVALSSLFLLGYANSAAASTTGATDVQHS EKAKIKVGADINNEKAGKVDKNSLADSAPKKEEAETKAKSKVKAKINEIIHDKKQVDKVL ASVKSAKNGQAVVYQDRSGDAVSNPEWLKKPNILELQRYRGVNDKGEKKPVGSDNVGEWN DVTLKTDMYAHVEERNGSKYLVFDVFFNNDGQSMLKHSNQQQYVWQIPYQIADLNNGGYK GDTLSNLSIDFYDKNASSAYNAVLSRDFSNFYKNDANSAKLNPLQTDHHFGQSIYLYTLG VRAGRSRNQDLSDTFHSNKDDQTIKNATKLSSPYSSYSYGIGVRTTAVNEAAHLHCDVKL RPGVTTEEIQNAYTWANTSSYGRTTNSAYTFISGREPYGEENLPRKKSDSEAPKLYLNGQ PMTDGKEFTTYQGESTPLKFEASDNEGKLKNFKVTGMPSGDFSVDNQSATEAAKYSKDYS KEKFENKVNGQPKEKIYDIAVTATDEAGNTTSHSVKVQLKNQSSKYAAPTADVITVKRGE KPSNNDIFAKLKYNKADDKKGTPSVVSIPDTNLVPDAFKTGDTADAGSAVVKVTYSDGSY HTVNVPVKVKKPDNLANTLTGKTVEVKVGDPLKQTADKKVDAKQYVTTTGNVQPQKVEFE NEPRTDLAGTFKRKAIATYPDGSKNETDVTFKVKPLKPVIQTNLIGHANQENQKVTVSVG DGVPDGAIVRLTDDKNNTLGEGQVNNGSAEVVIKDKMPDNTKVKATTIVNNGGEITSDPS DPSNVSQDDVAPTLTVSAPSEITAGDDLTFTFDAKDNVKVNFEIATGIASGLSDLDMGNL MNILTQQKTTYSSYQDDHMQGTTTLLAVPDSAVGKHEFTFKVTDDANHTVTKKVSVTVYP KLKLNVEPITVPLGGKLPDAKVALGKTEGIAEVKNKKGSVDIPAPTIQWVEQPKTDKVGN ALPGKVKIKFSDSRGEKIVDIPVNVQDQNKPEIKVYKKENGKYVEITDKDNDGYIKLDSY AREDVDFKITSTDNSGQINDLSMMPIPGVKSSKPDGTGSKDNPKSFTLTGQAPLGDKYSR VVKAVDPSGNTTTLKVRLYPHNQSEKYGNKVQEKLLTYKMSDGNKYPDPKDGISQEGNDF PAGSTYSWATEPKWTDPTSGKDGKGTPKEVSICVTLPDGSTKNVKSKLTIIDDVPPVIEE PEDAETVTKDNHTVYRVKVARGGETKISLKLHDTSGQLQSLTTAGTSFVTAGTLSKTTGA TIDNPATVDLTVKAPNQAAEEGKPWQETVTLTDAKGNTTTATLELYADKDADLYDPQINT VAKDNVQEKVTQDDIKKAVINDKKYPNNYQSPEITVDGDLEQLGKDKKDYFVPVTVTYPD KSTDHVQVHVTIGNDTLAAKYEATNGHISVDYGTSKDTIKTKVENTSENGVKVKEGKKKA KVDYTVQVLEESSLPDGKTAGKFEVPVKVVYSDGSADTTTVKVTVGQPQSKSDVSSFIGQ VEKEYGQATKENDVVKVIKQDDGPKDSSHIKDKQIVPGQTLPDGKHPGTQKVRVQLTFDD GSHKVVEVPVITKDPLNKQYEPGATELKKEYGKPATNEEIEKQVTVQDSSKKPAPKENVT KIEVVPGQTAIDGKQPGTVKVQVKVTYKDGTSDIVNVPVTVADPASVTYQPKADALTVPW GTKQEDIKKQILSKVTIDSKYPTDKTKPKIEVAKNANVPDGQTSTKVNVPVEVTYPDGSV AIVQVPVTVGNKQADNYDPTVTPIKKTYAERKITADDIKKAVTINGLDPNKGDYTISVDD TIPADGFAEGHTDVAVTINYKDGSTEKTKVPVIIGQSEAGYTEKNLPQAKTIYKNYGEKI EDSEITGAVSVPNYTKIDKQTPGDAKKLQFTIAEGSAKPDSHKSGKTLVKVVVTYEDGSK ATVDVPVIVKAPDTEQYTPAATQVEKEFGKQTSEDDIKKAITISGYPEDKKNKIQYKVST DKIPNGQTAGDFTVPVEITYADGSKGNIDVPVKVKAPQLQTTDNTVFVGTIPDASDSISN KDKYPKNTTFEWEKTPDTSKAGEPTGNILIHMPGQKAPLKVENVKVKVVAVPETQYINVF EGETPEASKGIKSKEGTTAEWQKDPAGVAQIPDTSTAGTVKGKVVVKVPSVQTPATVEVT VNVLPAPKGGTINTTVNGSVDPKSGVKGNDKYPDKTTYVWKDGKPDLTQPGIVTKKVTVK VPGMTAKEVEVTINVLPNPAGQDQVTLQGQTPDPKKSVADNEKYPKGTTFKWTKEPSTDN PGETTGKVEITVPGSDKPITVDAKLKVIPYPTKQHRVVLQDPEGKTPLNAEDSIKNADQL PSDPNNRTDFTWKDGKVPDNKVPGNKNGVVLVKIHGVDKEIEVPTTIEVVPNPNANDGIK VAKGGDPKPEDSIANIGDLPSGTTFKWKKDHKPNTENPAEKVPGVVEVTIPGIDHPIEVP VNVVVTDKPFINNGAATNDSGDKNKTEITGKSLPGTKIEVQDETGKKIGEGVTDQEGKFK IAVTPKQAAGKQLKLIPTNKNQTGDATTVTVTEKPAKPTIDTPENGSVTIKPADNANNVS IDVDMVPNTVNEVIDENEPQPKQTIVAHKDKDGKWKIDGDVPTGVTIDPETGAITIPAEA VKDGSPISAIAKNKDGQSSDPAKGTVGFIKPQIINQSANNDDTKNKTIVTGKTLPGAVVK IVGPNGHEFTDSKTPVKADKDGNFTVEIPKQEQGTLLTITPINGPKAGTPVNVAVGISIT DQKAKNTSDKPDKTVVSGETAPNAKVTITDTDGNPIKDKSGQPVSVTADDKGHFTVDIPK QADGTDIVLTPSLKNGDKANLVGEPVNATVKDTPVVKDGKAINDPKMPDKTVVSGKTTPK AKVEVKDKDGKTIGTGTADDQGNFTVAVPKQ >gi|308169839|gb|AEHR01000023.1| GENE 2 8984 - 9370 537 128 aa, chain - ## HITS:1 COG:SA1057 KEGG:ns NR:ns ## COG: SA1057 COG2314 # Protein_GI_number: 15926797 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 64 128 2 67 67 74 53.0 5e-14 MAKVLKTNVSKTIIGLDNGSIEEVDTASLDFIPQVDDELEVYKTGDEIIVRKCNKEQFYH NGRRVNKLVYALLAIFLGSFGIHKFYAGRMVGIVYILFFWTCIPGLIGFIEGIAALVKEA DSDGNIYL >gi|308169839|gb|AEHR01000023.1| GENE 3 9625 - 13428 5511 1267 aa, chain - ## HITS:1 COG:no KEGG:HMPREF9243_0550 NR:ns ## KEGG: HMPREF9243_0550 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: A.urinae # Pathway: not_defined # 484 1074 5 616 764 276 37.0 5e-72 MNDKMQMHRLIEQKRIEGADKKPRYGMRKLTIGTVSCLLGFASLLAFTTPNFSQAAESGN TGGNNSLITGTVPKENKSSSEEGEKLRAPQDVSGQLENLKIKLSGDNHENASLIHPLRPA TDDESSDQQMKVNFSFDVDGSEIKEGDYFDLNLSENVNLYGATSKKADIQTKLYVGNDVV AKGVYDAENHRMRYTFTKKAQEYGHFTQRVMEPVFIDAKGVPVNNKNVDVEASIGSHKSQ KEVEVNYDLPVKEGEDNLNSNGNANLSDIDESTGTYKETIYVNNKQREQNNTRILIENGG KNSFTTFDGQVANSIEVYKVKDPSKLSGSMDLDMDNLEKVSPTQYDQKLKADKSGIEINL KNKGTKDVYVVRYNGKYDASKTANIKTTIIADPQNNPYETAKQFASVSTRRPDDESQRLL GSFYDTHIYQTVDKNGNLIRTDYVQDFKHFAEGRENETYTTEQIPVDGYTLKKAVAANKA NCNQDGSPATGNFTAQVTKAVTYYYTKQNDKGFFKAIHVYQTVDDDGNILSTDAIESGNL QSGYDNQQYTGDIKGRDGYTFTHVDDVDGITKKDQQVTGNFEIDKTKKATFYYQKVVQKG HFKEVHVYITKDKNTGKVTSIETVEGNEKSGLADEQYTTEKKDREGFTLTKVEGQGGHPK FDNEGKKTSANYIVGERQVVQYTYEREVATGTFKETHIYITKDEDGKELARDVITTEPQR GNETEEYTTEKKDREGYTFVKTENPVGDPKYSEQGEPTKGNFVGDKDQAITYVYEKTVKK EVAPQPKRGTFKEIHIYIIKDEKGNIIDTNNTETMTIGNENEEYTTKKIDKKGYTFVKTQ DPVENPSYSDKGDSTKGKFVGDKDQAITYVYEKTVKKEVVPEPKKGTFKETHIYRVVDED GKVISESTSERVVSGTEKEEYTTGKVDKEGYTFKNTQDAKENPKYSDKGEPTKGKFVGDK TQAITYVYEKKVAKPAPAPEPKSGSFKEIHIYVTKDEDGNVVNTIQSENKVKGHDGDEYT TEKNEKDGFKFVKTQDPKDDPTYSTEGKSTTGKIVGNKDQSITYVYEKVVKKEKPTPKPE PKSGSFKEIHIYVTKDEDGNVVNTIQSENKVEGHDGDEYTTEKNEKDGFKFVKTQDPKDN PTYSTEGKSTTGKIVGNKDQSITYVYEKVVKKENQHHVQYVQYAQLLSHSQSQSRSQNRS QNRSQNRSQNRSQSPSQNRSRSRSRSRSQSRSQSQSQSHNLNRNLNQSQNLNQRNYHSQV LQKKVTH >gi|308169839|gb|AEHR01000023.1| GENE 4 14023 - 14406 356 127 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0260 NR:ns ## KEGG: HMPREF0868_0260 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 124 14 138 148 145 64.0 5e-34 MVQKNFGKTDNYLVANKHNDCLKGLFKLLLSRLYYIFDGGRMFVLYFDNQGIHEKEISFT DNAPFLLIPWHEVRNFKVKDKRNKVYIDVDHLGKIYSYEIDFNGKLPQGNRERFMQLSEH NFYRDSL >gi|308169839|gb|AEHR01000023.1| GENE 5 14451 - 14672 292 73 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0259 NR:ns ## KEGG: HMPREF0868_0259 # Name: not_defined # Def: Xre family toxin-antitoxin system antitoxin protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 71 1 71 71 117 87.0 2e-25 MPELEVDNKICEYRKALGLSQHKLAKAVGLKRRSIMAYENKTISPTVETAYKICKVLGKD IKEVFIFKDIKED >gi|308169839|gb|AEHR01000023.1| GENE 6 14842 - 16980 2870 712 aa, chain - ## HITS:1 COG:no KEGG:SERP1011 NR:ns ## KEGG: SERP1011 # Name: ebh # Def: cell wall associated fibronectin-binding protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 26 620 2590 3170 10203 167 28.0 2e-39 MVDSITDEQKNALAKVDDLLKLADTQGKTPDSVTKYNAEIAKIKDDLEKAKNAAKEIANK KEASKAEAETVLAQVATLNSKLVDAVAILKDQADMNELIAAKTALEKLTSEADPTTGKTK ASKDAYNQAKTAATQAETDAQTVINNANATPKEVAEALAKVNDKKAALEEAKTKLVDAMT DEQKSDLAKVEDDLKLPDTDKKTPNSVTAYNDAIKQFQAELETAKQEAKTVHDKGDDATK EEATAAQEKVAAVKEKLTKAVDLLKDKADKTALKKAKEDLAKLTKAADPTIGKTPASKSV YDQAKADATQAETAAQTIIDDENATPEAVADELAKVNKKKAALEEAKTKLVDAITADQKA ALAKVADDLKLADTKGKTSNSVKAYNTEIAKIQDELAKVKQTAKEIIDKKDEASKAEAET LLAKVATLNSKLVAAAGVLKDQAVKTELVAAKKKLESLIKEDPTKGKTTTTKTAYDNVKT TAEQLLTKAQNLIADDNATQDDVDAILENLLFKPDDLADAKTKLVDAITADQKAALAKVA DDLKLAETTGKTPDSVKAYNDAVEKIKAELEAVKQAAKAVQDKGDDATKAEATAVQDKIA AVKAKLTKAAELLQDQVSESHTDPVEIDTPTDLDNPTNIVQIVTKPTETKVTTTENNQGS GTTTTVESKANKQNQAKLPNTGEKYSTATIMVAIAGILLGFGLAAGRRKEKE >gi|308169839|gb|AEHR01000023.1| GENE 7 17271 - 19115 2079 614 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0951 NR:ns ## KEGG: HMPREF0868_0951 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain-containing protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 58 592 44 582 689 218 33.0 7e-55 MKNNKNHNLIERSNYEKITHYSIRKVSFGAASVAIAVAFMFLGGRSVSAAETNNAPTTNQ SAAANTKDEAANQVFNAPSKDANVTELNTKLQALPDKINNNTKINDMDQLGATTGVEAGK VKDITEFGGWTAINGGKFIIAKKSDKGVFPIETVNSVTGGNRNFVTYLNESTFDRKGNYM LFLGKVRTLINKEQQTVDGKPYKDNDNGADRNDGKGLVGYNGIEKTFKAYSPETGSKVNI EFKTGFTGDMNGHKANYKVEVIAKTADGKTEKIYEQTFDPSKSIDNDNMKVTPANIGGDA HFTTSRNISRDDITKKLEDPNLVDKLGKNSGTFTSKNITLKPGVVEYTTYISAANSKVLG MGYNTNWEHVALPISGIDFNIDQDTNILAKDLLKKIYNKLIATKDKDERGMTEESKKAYD DQLEAVKKILDATTLSETKDYKAETKTTLEKHKGLIVDKSGLEQNKKALDDFIANISTDG KTKDSKDAYDAKKKEADTAVADAKKVLDNQAATVDEVADALANVKIKKAELAEAKAKLVD VMTDEQKTDLAKAEETLKLPDLKEKTPASVAAYQAAIDKIKADLTAAKTTADEVINKKKM LLRQKLLTLKLRLL >gi|308169839|gb|AEHR01000023.1| GENE 8 19341 - 20405 884 354 aa, chain - ## HITS:1 COG:RSc3292 KEGG:ns NR:ns ## COG: RSc3292 COG3274 # Protein_GI_number: 17548009 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 6 351 3 334 336 107 26.0 3e-23 MKRKIYCDYLRLLATFAVVVLHVSASNWYGADVHGLAWQSFNFYDSATRWSVPIFVMISG ALFLGREIPIKKIYSKYILRLVIAFFTWNLFYAIMTQETSKHGIIYGLKTHKEAIVSGHY HMWFVIMIIALYMCIPFCKKIVSDTLTTKYFLILSFVFSMMIPWIVQLLKDYVVGSNEQL VKFVGIVNSKLSVMSMNMMLGYSFYFVLGYYLDKIELNKKQRIIIYILGIIGLAFTILVD LNLALKTHKPCGNYYGNFRVNVLLEVVAVYTFFKYRKYKNWRLNKFVYLISQYTLGIYLI HAFFIEKYASIFKFNTLSFNAIVSVPVVSVVVFVSAIIVSALLKYIPIIKKYCV >gi|308169839|gb|AEHR01000023.1| GENE 9 20621 - 21223 706 200 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_11545 NR:ns ## KEGG: HMPREF0573_11545 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 1 200 1 200 200 266 67.0 3e-70 MANSRKFVAKTKDVSLTVKRAESFSISYVDCEKDMFQIEENQDGIKFFQREKASACYWFG WLAKGNPEVVIMLPEDVDVCEIEAEVNQVLVTDIKADKIYVKVKNGKAAVRNVQANDVFI KCVNGKAVAHNVESTTSCTVDTLNGMSVLEGAITRDASIEVTCKNGITEVSDKNKVNLGC RTYGCAHYVVHCLNGKAAVK >gi|308169839|gb|AEHR01000023.1| GENE 10 21854 - 22492 506 212 aa, chain - ## HITS:1 COG:no KEGG:Apre_0680 NR:ns ## KEGG: Apre_0680 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 1 209 69 277 278 310 85.0 3e-83 MDTTIKGIALEEDRIKEIVEEILDINVDDGIRFEIKDISYIREEDKYENFRISLIANVGK TQNPMKIDITTGDAITPREIEYAYPCIFSKKDIKIMAYPLETILAEKYETIIRRNITTTR MRDFYDLYTLYKLKKDDIDYEVLKEAVKRTSNRRGSQEMMKDYEKIIEDIKEDSYLRSLW DVYLKENKYIGDLSFDKVVDVVTILSNDTKLC >gi|308169839|gb|AEHR01000023.1| GENE 11 22694 - 23281 245 195 aa, chain - ## HITS:1 COG:no KEGG:FMG_1423 NR:ns ## KEGG: FMG_1423 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 195 1 195 195 329 91.0 4e-89 MNTLKEYIKENVVITNKEAEKLGYTRYNLSGLTKSGQLERLRPGLYQLKGKVIDDFVLIS SNSNRIIFSHQTALYLHDLSDRTPSVFHISVPQGYNASHIKKRYEDIQVHYVKKDLYEIG KTEIKSPQGNLIPIYDIERTICDIIIDREKIDKQIFTDAIKRYFKSNNKNLRRLIKYSRL FKIEDEIRKYMEVLS >gi|308169839|gb|AEHR01000023.1| GENE 12 23620 - 24144 622 174 aa, chain - ## HITS:1 COG:DR1393 KEGG:ns NR:ns ## COG: DR1393 COG0406 # Protein_GI_number: 15806410 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Deinococcus radiodurans # 1 152 24 182 237 79 33.0 3e-15 MRHGADPVDRYGGWSEYGLTEVGRSQVNSAKHKLLGKGITGIYSSDLNRAKETAEIVADV LSLKITYLPQFREVNNGLLAGMKKVEAVEKYPGKYFRTLDWAETWPEGESPEQFFRRIKS AWYSFKKKVGSRNVLLVTHGGVINIILCLENGILYTNKELHFKINDAEIVQIDV >gi|308169839|gb|AEHR01000023.1| GENE 13 24273 - 24779 220 168 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|50365462|ref|YP_053887.1| acetyltransferase of 30S ribosomal protein L7 [Mesoplasma florum L1] # 1 166 3 169 170 89 32 4e-17 MKLIRPNNQYIQGYIEANEEDEMFRPNAERRFNHPETIVESSYNLEHGINLPTNYVKSTT FWLIDNEKFIGEISIRHELNSFLINYGGHIGYEIRQSECMKGYGTKMLSMALKYCKETLN LHKVLITCDDDNIGSIKVIENNGGILENKVKNSLSRGNVITRRYWINL >gi|308169839|gb|AEHR01000023.1| GENE 14 24936 - 25607 497 223 aa, chain - ## HITS:1 COG:no KEGG:Fisuc_2495 NR:ns ## KEGG: Fisuc_2495 # Name: not_defined # Def: hypothetical protein # Organism: F.succinogenes # Pathway: not_defined # 9 216 7 212 218 196 43.0 8e-49 MSKIETLVDEGFRVSLIETAFFYGKFEIPHIDAPKDIVVPSGLVPFSRRQRSRDKQDFVC FYEHDVKFREILTHTEDYVEELKQYPGVISLDCSLYIDAPLCVQIASIYLNRAVGYYLSK QGICVIPNIRWGDERTYTDELFGEKIAFQGVDKHSIVSIGTYGQIRTAESKRYFREGLIA MLDELEPKVVLVYGAMPDTIFHGLETITEFVQYPDWTTRMKQK >gi|308169839|gb|AEHR01000023.1| GENE 15 25600 - 25932 387 110 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0167 NR:ns ## KEGG: HMPREF0868_0167 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 109 1 109 124 160 81.0 2e-38 MDVQKFKEVIRRRKETHDEYDYGVEMCNKEEIQILAEDIPSTIEYLKNDCTADEFVWISE IIDDLAEKTQNRELMECYKSLMGKFPEESKRYHVDFCIECAEDFLEDNDV >gi|308169839|gb|AEHR01000023.1| GENE 16 25932 - 26306 309 124 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0165 NR:ns ## KEGG: HMPREF0868_0165 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 124 28 151 151 172 81.0 3e-42 MDVQKFKEVLKRRDETHSEYTYGLEMCWKEEVEILSEDIPSTIEYLKNECTEDEFSWISE IIEDLAQKTKSRELVECYKSLMAKFPEESERYHVDFCIECAEDFLEDTVEDSDSNQQFKK RGKK >gi|308169839|gb|AEHR01000023.1| GENE 17 26306 - 26791 757 161 aa, chain - ## HITS:1 COG:no KEGG:Fisuc_2497 NR:ns ## KEGG: Fisuc_2497 # Name: not_defined # Def: hypothetical protein # Organism: F.succinogenes # Pathway: not_defined # 1 154 1 155 155 173 58.0 2e-42 MGTTKSGRVLNTRGAAGSASQFAVVHSNEGAYTKPQKDNHIRLKSGGHGQTGLKELDKYG IEYYIVKTYPNGVRVGYVPRHKDTKKKKGTNQAWFPAHWTTKDIKHAGEHVANLKGNKHV KDGVIVFGNWKGVRVGVIRTHGQIGTIFPDSNQPRKKRGKK >gi|308169839|gb|AEHR01000023.1| GENE 18 27034 - 27522 332 162 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0163 NR:ns ## KEGG: HMPREF0868_0163 # Name: not_defined # Def: toxin-antitoxin system, toxin component family protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 12 161 38 191 194 235 83.0 5e-61 MLITISNHFPWMKIALVPYSAFSDEAKKLLQKKSNHAFFVKESKENPPTIYYNDTFESKG AIRLSVFHEIGHYICEDEDDLADYFARHFMCPTAYLMLKGIESPNEIVAFCGVSFQTACN ASANIANRKKKLGNKLLSYEKEFIKNIDPITFGFYELTDRGR >gi|308169839|gb|AEHR01000023.1| GENE 19 27570 - 27890 318 106 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0162 NR:ns ## KEGG: HMPREF0868_0162 # Name: not_defined # Def: DNA-binding helix-turn-helix protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 106 20 135 135 165 82.0 5e-40 MSWQEKVKNLMNDRGINQKQLSQLSGITESSVSRYLRSDRRPRLDVVVNFAKAFGVATDY LLDDGEESEASAYKTISTAIARKGGELTPEEKNELIALLLGSKADV >gi|308169839|gb|AEHR01000023.1| GENE 20 28158 - 28973 486 271 aa, chain - ## HITS:1 COG:HP1165 KEGG:ns NR:ns ## COG: HP1165 COG0477 # Protein_GI_number: 15645779 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Helicobacter pylori 26695 # 9 255 135 372 386 76 29.0 4e-14 MVDTLVRLDTRIATICMIISGFIGSFIYQQIGFSLYWFSLLGATICIVIIFICFPAKNIG TIPQGNSASITKIKHVFTEGVRELIDNKNVRIYFCALATTQIFFQSHFQFWQSFFLEIGM KQHYLGLLYVLFQSVSFVVSFVSMRGILARYKLASILPYVLCATLFCIILLLTSVNIYIK IFAYSIFVAIFWIISNDINAQLRQNLTEKALSTLTSLASMMTRIASIIVLSILSVLLHLL PVHVVIPLMFAIAMITTLTSYLYASYKNANC >gi|308169839|gb|AEHR01000023.1| GENE 21 28966 - 29469 324 167 aa, chain - ## HITS:1 COG:BBI26 KEGG:ns NR:ns ## COG: BBI26 COG0477 # Protein_GI_number: 11496744 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Borrelia burgdorferi # 40 144 10 114 392 89 42.0 4e-18 MFFTSKTFRSQKRCHAMHHGVSENNMHTLPTSLQRNIFVYYSVAAIYMLSISLPHAILTP LLIQKGLSFADIATIQVAFSIAVALCEIPSGILSDAFSRRTVYLWSKFLIIAFFLIIYFA HGLQAMTIAWFIYGISAALDSGTIGNEIILRVRDHCDHLGESSAKNG >gi|308169839|gb|AEHR01000023.1| GENE 22 29663 - 29962 298 99 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0424_0740 NR:ns ## KEGG: HMPREF0424_0740 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 1 99 1 99 99 173 93.0 2e-42 MDKNENINLPTKVTITLDLDKLYNELKENGWKPDRVAKYYKHYILKHISKEDTILGPDES VRYLIDLLTTISSRHFLSMIEPGPGKDALIKRVIYEYEK >gi|308169839|gb|AEHR01000023.1| GENE 23 30058 - 30675 704 205 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0739 NR:ns ## KEGG: HMPREF0424_0739 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 6 205 37 237 237 213 67.0 4e-54 MGNNNLKEKIKNARKSVGKGKFKNLYWWVIDLENEVDIYGDKYNKIFLMPYTFGFTEDDL NTNISTDIIDLKNYEENDELFDEEGNNLFNRISKQKNYKKAKIHSNNYNVDITTGNFHPH DALKGVIKETEIKQIMLVRNTYKNGSHYGVLYDNDCPKDEEKNFIILRDEANKLRYIPKK CIKLVKENEEPEKTLNDFLNAIGAE >gi|308169839|gb|AEHR01000023.1| GENE 24 30745 - 31218 254 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804456|ref|ZP_07698523.1| ## NR: gi|309804456|ref|ZP_07698523.1| hypothetical protein HMPREF9213_0967 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9213_0967 [Lactobacillus iners LactinV 09V1-c] # 1 157 1 157 157 260 100.0 2e-68 MKHKSTVKRNGGGRIQMTEEHTIVSAAKGNRLQLIPLIAVLAGLGILVYRFWFNTSALYA PFYALMACGVVGALIQLLVAITTTCLYRRKVIAIVDATVIIITLLTIIFGEYIACNVLKL SVISYAWSPGTQINTVATILSGAVVTLLVFCEQRKIK >gi|308169839|gb|AEHR01000023.1| GENE 25 31978 - 33003 835 341 aa, chain - ## HITS:1 COG:CAC3407 KEGG:ns NR:ns ## COG: CAC3407 COG1073 # Protein_GI_number: 15896648 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 58 299 150 397 431 110 32.0 3e-24 MKKIFFSIFSIVIILVILVFSIRIYNDYKYKDINVLNFPKYYKDVTNISLYPTDIDGVDV TYVDEGRMQGFRFVPKKKSHKGLVICYGGSEGSPNFESAKRLAEEGYETFALFMFGMKNQ EPTLTKIPLEQFEDVINYINKNIKDNKPISVLGASKGAEYALNLACKYPEIDNLILISPS SYNFAGLDFKDYGSSWTYKGKQLPYIDTKKSSFSSFLKNIIVPTIIKSPISYKETYKSAI EQDPSSQEKLIPVKNVKANILMIVGEDDLMWDSFAMAQKIKEKNPNAKIYSYKGAGHIFA GNGVLNLGRIRIATGGTIEGNEKARSESRKTIATFLKENHK >gi|308169839|gb|AEHR01000023.1| GENE 26 33306 - 33542 181 78 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21053 NR:ns ## KEGG: HMPREF0421_21053 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 41 1 41 51 63 75.0 2e-09 MMFLKSLTADGQPWGELGFRKIRVKNYYIYFCVDESRKKFKYSRLFTREETRLSNWNNCN VTRCQASLKPFNDSFSYR >gi|308169839|gb|AEHR01000023.1| GENE 27 33514 - 33840 426 108 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21067 NR:ns ## KEGG: HMPREF0421_21067 # Name: not_defined # Def: toxin-antitoxin system # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 8 108 7 107 109 177 92.0 1e-43 MQHAYGGLIDMAVTKKANVNVRIQENIKQQAEQILETIGITRATAIDMFYRQIFLNKGIP FSLTIPKSLPAQDDMDEKTFNALMAKGYDQAAQSDSYPIDDVFEELDR >gi|308169839|gb|AEHR01000023.1| GENE 28 33903 - 34763 748 286 aa, chain - ## HITS:1 COG:CAC0528 KEGG:ns NR:ns ## COG: CAC0528 COG0488 # Protein_GI_number: 15893818 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 286 207 492 492 275 50.0 5e-74 MKDKFEISKNEKLRKDIKRLKEAARQSKIWSDKIENTKNGVKVSGIKPDKGRIGHQSAKM MKKSKNLEHRQNKAIEEKQSLLKDIEIKESLLLHPLHHHKNPLISVSELSAHYGERQILS NLSFEIEQGDIVAISGRNGSGKSTLIKILLGINHEYTGEIKLASNLKISYIPQDTSNLSG SLNEYIHSQDVDETLCKTILRKLDFARELFEMDMIDYSDGQKKKVLIALSLSKPAHLFIW DEPLNYIDVISRIQIEEIIKEAKPTLIFVEHDKRFVEDIANKIIQF >gi|308169839|gb|AEHR01000023.1| GENE 29 34867 - 35382 305 171 aa, chain - ## HITS:1 COG:CAC0528 KEGG:ns NR:ns ## COG: CAC0528 COG0488 # Protein_GI_number: 15893818 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 166 1 166 492 175 56.0 3e-44 MSAIKIQNLTFSYYGYVKPIFENVSFSFDTNWKTGLIGRNGIGKSTLFKLLLNQETYQGK ISKDVEFIKFPPNISDTSKLGIDLYKELISDDEEWKLFRELNLLNVDENLVYREFKTLSK GEQTKILLAILFTKEDGFLLIDEPTNHLDMNGRKILSEYLKSKKGFFAHFS >gi|308169839|gb|AEHR01000023.1| GENE 30 35558 - 35752 268 64 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0396 NR:ns ## KEGG: HMPREF0868_0396 # Name: not_defined # Def: toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain-containing protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 62 1 62 62 108 95.0 8e-23 MTTAINIFLRTTIRENGIPFSLKLEAPNDTTIAAIEEGRRIASDPSVKGYRNMEDLKAAL DLGN >gi|308169839|gb|AEHR01000023.1| GENE 31 35733 - 35927 118 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLIAVVILSPSSEKILSACSLIYLSVLIFKFVVAIYGTSLLFYHTQILVYIQHVVITIHT ILVN >gi|308169839|gb|AEHR01000023.1| GENE 32 36242 - 36547 412 101 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0421_21051 NR:ns ## KEGG: HMPREF0421_21051 # Name: not_defined # Def: toxin-antitoxin system # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 100 1 100 101 166 86.0 2e-40 MANTNVVYARIDTTLKENAESILNQLGITPSSAIQMLYSQIVLQKGMPFELRLPVNKPIA LGSITRDELDKELQKGLDSLRSGKSYSADEVDLFFAKEYGA >gi|308169839|gb|AEHR01000023.1| GENE 33 36601 - 36930 268 109 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRQKSSLAPSHDFDHIVEFSLFVVDNIFDVSACIKDTNNRHATFIFIYEVKSCVVIYGNP AYSHRMPRLPLYKRMAHRHSVKRADSFSNATHLFFGCFRNLQSKTDILV >gi|308169839|gb|AEHR01000023.1| GENE 34 37136 - 37768 905 210 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21058 NR:ns ## KEGG: HMPREF0421_21058 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 210 1 210 210 379 96.0 1e-104 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY LLDKDNAIDLSIIKKPIDVAKYGLNAKLGVRKKIKIKEQIIRDEYADAEIIMLTVTKFIP NSSEKFMDNFIGWITTLFSDIPLFDTFAFGKAVESIGSEQYYLVNKKEKQFFVLITDEYI ISRMMRVKFTDKKMCVGDKEFTQVGKLRDK >gi|308169839|gb|AEHR01000023.1| GENE 35 38349 - 38645 365 98 aa, chain - ## HITS:1 COG:SPy0550 KEGG:ns NR:ns ## COG: SPy0550 COG3077 # Protein_GI_number: 15674648 # Func_class: L Replication, recombination and repair # Function: DNA-damage-inducible protein J # Organism: Streptococcus pyogenes M1 GAS # 1 58 8 65 104 59 44.0 1e-09 MAVTKTANVNVRIQENIKQQAEQILETIGIPRATAIDMFYRQIILNKGIPFSLTIPKSLL AQDDMNEKTFNALMAKGYDQAAQSDSYPIDDVFKELDC >gi|308169839|gb|AEHR01000023.1| GENE 36 38844 - 39455 773 203 aa, chain - ## HITS:1 COG:SP1625 KEGG:ns NR:ns ## COG: SP1625 COG4300 # Protein_GI_number: 15901461 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Streptococcus pneumoniae TIGR4 # 2 196 3 202 204 161 55.0 6e-40 METIVSALLVFVSTSIDYLVVLTILFASQGKKGLKSIYVGQYLGTGLLVLASLIAAYFLN FIPQDWIIGLLGLIPLGLGIRAIFVDEDIDEEDIEEKITGDGSKILAFTSLTVAMGGDNL GIYIPYFTGKSLIEISISLVIFALGILILCKLSQKLSSISAIGETVEKYEKVIVPVVFIG LGLYILIENGTINYFIGQVLKVV >gi|308169839|gb|AEHR01000023.1| GENE 37 39902 - 40081 137 59 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21066 NR:ns ## KEGG: HMPREF0421_21066 # Name: not_defined # Def: addiction module toxin RelE # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 10 59 58 107 107 81 80.0 1e-14 MMFLKSLTADGQPWGELGFRRIRVKNYYVYFCVDENKREVQILAVIYAIRDQATQLEQL >gi|308169839|gb|AEHR01000023.1| GENE 38 40053 - 40349 423 98 aa, chain - ## HITS:1 COG:SPy0550 KEGG:ns NR:ns ## COG: SPy0550 COG3077 # Protein_GI_number: 15674648 # Func_class: L Replication, recombination and repair # Function: DNA-damage-inducible protein J # Organism: Streptococcus pyogenes M1 GAS # 1 79 8 89 104 57 37.0 5e-09 MAVTKSANVNVRIQENIKQQAEQILETIGIPRATAIDMFYRQIILNKGIPFSLTIPKSLP AQDDMDEKTFNALMAKGYDQAAQSDSYPIDDVFKELDR >gi|308169839|gb|AEHR01000023.1| GENE 39 40479 - 40913 487 144 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21046 NR:ns ## KEGG: HMPREF0421_21046 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 1 144 24 167 167 258 88.0 7e-68 MRNKTIFCKTIFQSCLVMLLLLGSLFSLAGCTDDEEKAKLASYHWETVAVSREEFRIPEN YMNKDELYLFVSRDILDSHQDLSKVTLGDKHIKLVNSSFNLPGPGLKALFLVGKFDLKDK PGSAVLKVPGFKKKGNVAIGYKKK >gi|308169839|gb|AEHR01000023.1| GENE 40 41134 - 41313 94 59 aa, chain + ## HITS:1 COG:AF1793 KEGG:ns NR:ns ## COG: AF1793 COG1476 # Protein_GI_number: 11499382 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Archaeoglobus fulgidus # 12 59 18 65 70 62 64.0 3e-10 MDLQNEFIPTLELAEMVNVRRETIVHLENGRYNPSLKLAMDIAKIFKVKVEDLFEFTDE >gi|308169839|gb|AEHR01000023.1| GENE 41 41508 - 41684 80 58 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_21071 NR:ns ## KEGG: HMPREF0421_21071 # Name: not_defined # Def: phage integrase family site-specific recombinase # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 12 58 81 127 127 64 91.0 1e-09 MIKYESDKWKIFLKSERHDISEYYEKLVRKYIKKIKVYEDKFSVTFKSEISVDIERAS >gi|308169839|gb|AEHR01000023.1| GENE 42 41662 - 41826 61 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653817|ref|ZP_07906733.1| ## NR: gi|315653817|ref|ZP_07906733.1| conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 54 1 54 54 78 98.0 1e-13 MPKKVSEFRLKFHCIQHVMKLDTKTANEIDELKGKKQQLLIEKAGQEDDKIRIR >gi|308169839|gb|AEHR01000023.1| GENE 43 41883 - 42467 493 194 aa, chain - ## HITS:1 COG:no KEGG:Apre_1785 NR:ns ## KEGG: Apre_1785 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 2 177 1 176 176 299 96.0 4e-80 MVDELRKEIAIQQKKGLPFIMASVIIWLLIVLVSILDININMKNLLVFCCSCPLLPLAWL IGKLIKVDIFSKQNPLGQLGFIFTLNQMIYLLIVMWVFSAVPEKMIMVYAMVFGAHLFPY SWLYQSKGYTVAAISIPMISLILGCALNGTTVAVAACIIEIVFACVLHMELKKMGDDYNK SQFVELSKDQVSMK >gi|308169839|gb|AEHR01000023.1| GENE 44 42579 - 43085 297 168 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKPGWQCGRLDLSIQAGRSFCFRFSISIFAPPIWHELLQRDSLPLFKVLHNLHFFIFFIQ LIKELSTRSTRHTASRTIRCLVAECDKVLHLRLSAINIHIKSGHAFCTQIKNPTAALNAE PSENFSVFSFYCTYNMMCVNEWRNFLRMKLRLRLFIHCIPNIHIFLFS >gi|308169839|gb|AEHR01000023.1| GENE 45 43265 - 43744 603 159 aa, chain - ## HITS:1 COG:L24277 KEGG:ns NR:ns ## COG: L24277 COG0494 # Protein_GI_number: 15672204 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Lactococcus lactis # 44 157 1 119 119 96 45.0 2e-20 MEHNCGFINDKKAFRYRAAAIEEGCVLFAGNDEDDYYYSVGGAVHIGETSEEAVKREVFE ETGLNYEVDHLAVIHENFFIGSSGLKGVDFHELTFYYMMKPMGKRDFTSQSTTESGAKET MHWLPIDELDKCKAYPTFMKEYLKSEHIGVEHIVTDERD >gi|308169839|gb|AEHR01000023.1| GENE 46 43822 - 44160 331 112 aa, chain - ## HITS:1 COG:no KEGG:FMG_0970 NR:ns ## KEGG: FMG_0970 # Name: not_defined # Def: hypothetical protein # Organism: F.magna # Pathway: not_defined # 1 112 62 170 329 181 88.0 7e-45 MFQLTENEFENLRCKNFTSSWGGSRYLPNAFTEQGIYMIMTVLRGEIAIRQSRALIRTFK QMKDFIIENQDFIGSKELVQIAIQTNKNKNDIEKIKNKISTLATKEDLKKAI >gi|308169839|gb|AEHR01000023.1| GENE 47 44335 - 44556 216 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501138|ref|ZP_05744040.1| ## NR: gi|259501138|ref|ZP_05744040.1| hypothetical protein HMPREF0520_0648 [Lactobacillus iners DSM 13335] hypothetical protein LineA_00230 [Lactobacillus iners AB-1] hypothetical protein HMPREF9211_0179 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0826 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0889 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0520_0648 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9211_0179 [Lactobacillus iners LactinV 01V1-a] hypothetical protein HMPREF9215_0826 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0889 [Lactobacillus iners LEAF 2053A-b] # 1 73 1 73 73 141 100.0 2e-32 MNSVIFCFEGANDAGKSTLLKKLSTNSLCQNFELGTTEKLQDYEWWFHNSSPYELIDEII GLVTNRERNLQFL >gi|308169839|gb|AEHR01000023.1| GENE 48 44549 - 44956 519 135 aa, chain - ## HITS:1 COG:no KEGG:SSA_1628 NR:ns ## KEGG: SSA_1628 # Name: not_defined # Def: MutT/NUDIX family protein, putative # Organism: S.sanguinis # Pathway: not_defined # 1 123 1 126 139 79 34.0 5e-14 MRASMFVIDKTGDYVVIIKRYKDGREYYVVPGGKVVVGESVQHAAIREISEELDLNINES EIIGSLNGDDNVFFFAKTGYKQGGLSIHGEEKSRSNLDNVYQPIWIRISEISRLEIFPKF DKNRFSKIVGDKCNE >gi|308169839|gb|AEHR01000023.1| GENE 49 45111 - 45275 196 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309804449|ref|ZP_07698516.1| ## NR: gi|309804449|ref|ZP_07698516.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0522_1143 [Lactobacillus iners UPII 143-D] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF0522_1143 [Lactobacillus iners UPII 143-D] # 1 54 4 57 57 92 100.0 8e-18 SWVNLFRAVGLDALKPNQKGRKKKLDKHKIDIKAKETEEIIVDTSAEHVKEYYN Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:44:58 2011 Seq name: gi|308169836|gb|AEHR01000024.1| Lactobacillus iners SPIN 2503V10-D contig00033, whole genome shotgun sequence Length of sequence - 5479 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 4662 5979 ## gi|309809843|ref|ZP_07703694.1| Gram-positive signal peptide protein, YSIRK family - Prom 4698 - 4757 8.8 - Term 5016 - 5064 11.1 2 2 Tu 1 . - CDS 5108 - 5479 342 ## gi|259501185|ref|ZP_05744087.1| conserved hypothetical protein Predicted protein(s) >gi|308169836|gb|AEHR01000024.1| GENE 1 3 - 4662 5979 1553 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809843|ref|ZP_07703694.1| ## NR: gi|309809843|ref|ZP_07703694.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners SPIN 2503V10-D] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners SPIN 2503V10-D] # 1 1553 1 1553 1554 2897 100.0 0 MGISKNNLQNKLQQEARQVPHFGIRKLAIGTASVLLSTSLYFGAMGRLVQANANVATGNN VENEKINSGKKDTDRATNDHVEQPKKNIDGGQCLLVKDGKYDQQQWQNQYNEEARNRIES KQAVYDLEDELSQVSEAKRAELIKELQQPLSTEQRKQKVQEIKKTINKIVQDTLPSAKKE AHDKVQKMENLIDPEKKPYYNKIQQAKNKKELREIEQQAELEALKRETNDYITSQYNNYH SNAELNDSENQEYKNWANKRLDLYAKIALHPETELSSEADKHDFNKLKAVLAYARRAADS VITGWDTDQDLEHNQTIDYYSHIFADGHMTDRKQYIANDWSKGKKPHSGQLIDPSNISEQ ITRQADGTYEWQVSFNNNNLKTGKARFYFTVPRDQEIIEDQNHPMEVYRDGENSKSITST NMQGVARIDDKAKQFTNMVNEIAAQPDWRSLKQKFAMRHGDTTGAVDPDWDKDATINGNR VPDRRGFWINSFIDGYTYNPGWPRSGQCKTLQGIIFGLNDGGRDPNKPVTRLMLNEGYDV SKQPEFTAKSPRAVGKSVRLVGDASDRLLERINTIQKRRDLVFMQTMIDSDAMSFRFYTR NVDPAKRGREHKIESVIGTRSFESNTNHSLVKLIDTYVSAQRPEPVLTQPITVPLGVEPD VKDGIENLPEQQKSNHFSWVSNNKPIVYELTQSGKPVLGEAISQDAHRSISNIDLQIPVN VVGVFKEGQDFNTVKQGVIPGQMIRVSKAGATGDFKAQTLNYGLSIDKDGNLTGKPKITD WKPGECQRKVVLDLTFNGKATQVPITIVRSEQAPAVTIYEGNKTDFAQNPDGNRVTNTYN NRISLVFYKGENKTYTVAATDDQTIKQATYQLSNNQPLSKDIKGLKVNDQDQAIKAQSNK KGAKTDPYRFTISGPVSTGKHGASDYVTPGHYTRQIVAVDNEGLKTTYTFDIEVREKAQD ARLAGKELHRTVGDTFSEVYQNKADANQLTTGTKPAGITWGFEGKTPLDIVTKNGNQYKH SRAGYFEYVATATFSDNSVVKTTGEKDHEHVRITVKPQTPSFTASELNEAGNVKNKQLTI NVQKGLPKGAVVTVYSDQAGQNAIGHATVDTNDQTSVKVTVSKVPVGKLYVQTAVTGPDQ CYLTKQPVTVKSDMGEGTATKLPAQATLTLTNNGNETIKPYTTVDNKTKTITIIAGKQFD INGDVTDRIDVIKDTVVQPSHENEGKSAESWMNPVEKGPDGTQAKRDRNYQKQYSQRDSK RESLGSKANPYKVSLSGTAPEKIGKYYIKFQTWNGDDRAETTEWKVKVVTPAPKLEGGLF GGREESAKHPWYNPNGYSINTMVSKGIDRLTYTVTDKNGNIIERSDKLDDNFVIHEDLYK NADGSYRENEDFTLTIAANKYDNGDEAECCLPTVKTVKFQWKDFDIPTFTRDEKRKGTII YINGKEKGFIPDGKQGEQGKQGQAGKNGTSVTIKSITSDKSGNHVITFSDGKSLTVENGK NGKNGINGKNGESFIDPHVDTKGDLWVTVVDANGKKSQKNIGHVKGDKGDPGK >gi|308169836|gb|AEHR01000024.1| GENE 2 5108 - 5479 342 123 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501185|ref|ZP_05744087.1| ## NR: gi|259501185|ref|ZP_05744087.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] LPXTG-motif cell wall anchor domain protein [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners DSM 13335] # 1 123 3671 3793 3793 195 97.0 9e-49 EVEVKDKDGKTIGTGTADDQGNFTVAVPKQDPDTKLTLVPTANGVTGESSEVTVKDDIVN NVKIKSSKSVDNTKASDTHIRSDKATAHELPQTGNNSFALTGLLLAGIAAMLGISEYRRK NKD Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:46:14 2011 Seq name: gi|308169796|gb|AEHR01000025.1| Lactobacillus iners SPIN 2503V10-D contig00013, whole genome shotgun sequence Length of sequence - 44601 bp Number of predicted genes - 39, with homology - 39 Number of transcription units - 15, operones - 10 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 21 - 650 536 ## COG0344 Predicted membrane protein - Prom 678 - 737 6.5 + Prom 577 - 636 7.0 2 2 Op 1 24/0.000 + CDS 761 - 2704 2505 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 3 2 Op 2 . + CDS 2730 - 5225 2546 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 4 2 Op 3 . + CDS 5304 - 6239 1074 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase + Prom 6261 - 6320 5.0 5 3 Tu 1 . + CDS 6360 - 6956 727 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Term 6994 - 7049 1.3 6 4 Tu 1 . - CDS 7051 - 8025 800 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 8050 - 8109 3.7 + Prom 7981 - 8040 10.5 7 5 Tu 1 . + CDS 8117 - 9466 1241 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP - Term 9820 - 9876 1.3 8 6 Op 1 1/0.286 - CDS 9879 - 11546 1356 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 9 6 Op 2 24/0.000 - CDS 11557 - 13047 859 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 10 6 Op 3 . - CDS 13054 - 14115 996 ## COG0505 Carbamoylphosphate synthase small subunit 11 6 Op 4 15/0.000 - CDS 14120 - 15055 326 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 12 6 Op 5 . - CDS 15063 - 15539 381 ## COG0597 Lipoprotein signal peptidase 13 6 Op 6 . - CDS 15540 - 17216 1998 ## COG2759 Formyltetrahydrofolate synthetase 14 6 Op 7 . - CDS 17216 - 17563 215 ## LDBND_0912 hypothetical protein - Prom 17594 - 17653 10.2 - Term 17598 - 17652 -0.6 15 7 Tu 1 3/0.286 - CDS 17656 - 18780 1040 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 18867 - 18926 5.3 - Term 19124 - 19160 -1.0 16 8 Op 1 6/0.000 - CDS 19252 - 19593 490 ## COG3599 Cell division initiation protein 17 8 Op 2 . - CDS 19669 - 20208 623 ## COG4474 Uncharacterized protein conserved in bacteria - Prom 20404 - 20463 5.3 + Prom 20177 - 20236 9.4 18 9 Op 1 7/0.000 + CDS 20281 - 20871 546 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 19 9 Op 2 . + CDS 20876 - 22765 2070 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 20 9 Op 3 . + CDS 22765 - 23178 474 ## LJ1197 penicillin-binding protein 1A + Term 23190 - 23241 8.8 - Term 23183 - 23223 5.1 21 10 Op 1 6/0.000 - CDS 23230 - 23856 557 ## COG0177 Predicted EndoIII-related endonuclease 22 10 Op 2 4/0.143 - CDS 23882 - 24517 537 ## COG3935 Putative primosome component and related proteins - Term 24526 - 24559 4.0 23 11 Op 1 . - CDS 24578 - 25876 1742 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases 24 11 Op 2 . - CDS 25934 - 26452 382 ## LJ1201 hypothetical protein 25 11 Op 3 . - CDS 26449 - 28353 1827 ## COG1199 Rad3-related DNA helicases - Prom 28398 - 28457 1.9 26 12 Op 1 . - CDS 28547 - 29248 513 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 27 12 Op 2 . - CDS 29272 - 31611 1635 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 28 12 Op 3 8/0.000 - CDS 31596 - 32891 871 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 29 12 Op 4 . - CDS 32884 - 34188 722 ## COG3857 ATP-dependent nuclease, subunit B 30 12 Op 5 . - CDS 34182 - 36356 1778 ## COG3857 ATP-dependent nuclease, subunit B - Prom 36404 - 36463 6.5 + Prom 36345 - 36404 5.6 31 13 Op 1 5/0.000 + CDS 36425 - 37345 1168 ## COG1577 Mevalonate kinase 32 13 Op 2 5/0.000 + CDS 37360 - 38337 742 ## COG3407 Mevalonate pyrophosphate decarboxylase 33 13 Op 3 3/0.286 + CDS 38349 - 39422 1011 ## COG1577 Mevalonate kinase 34 13 Op 4 . + CDS 39435 - 40460 785 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 40464 - 40502 -0.2 - Term 40451 - 40489 -0.2 35 14 Op 1 . - CDS 40495 - 41904 972 ## COG0144 tRNA and rRNA cytosine-C5-methylases 36 14 Op 2 . - CDS 41904 - 42869 905 ## FI9785_910 hypothetical protein 37 14 Op 3 . - CDS 42871 - 43617 589 ## LAC30SC_06265 hypothetical protein - Prom 43672 - 43731 11.2 + Prom 43619 - 43678 10.4 38 15 Op 1 . + CDS 43705 - 44307 503 ## COG0681 Signal peptidase I 39 15 Op 2 . + CDS 44323 - 44508 216 ## gi|259500604|ref|ZP_05743506.1| conserved hypothetical protein + Term 44519 - 44559 1.1 Predicted protein(s) >gi|308169796|gb|AEHR01000025.1| GENE 1 21 - 650 536 209 aa, chain - ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 8 201 4 204 213 135 48.0 5e-32 MSVFNSNIILFILAYLLGSFPSGLIVGLIFFKKDIRNFGSGNIGTTNTFRILGPKAGIAV LFADVFKGWLAVNMFKLCHIHVVNLVLLITGLLAILGHTFSIFLKFKGGKAVATIAGVLF AYNFNFTLVCATIFLPMIFITSCISLSALISIVIIFIVSFLFHDIYLSILLGFLVLLVYI RHRSNIIRLINGKENIIPFGLFYWYRKIK >gi|308169796|gb|AEHR01000025.1| GENE 2 761 - 2704 2505 647 aa, chain + ## HITS:1 COG:L0290 KEGG:ns NR:ns ## COG: L0290 COG0187 # Protein_GI_number: 15672961 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 6 640 6 641 644 862 68.0 0 MTNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGFGKE INVTIHPDNSVSVQDFGRGMPTGMHASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGVG SSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIFS TTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDGIKSFVSYLNEDKDTIG DIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRAFNDYAK KQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDNIIYEQ LSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTPAQSRIP EKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINTMIHTIG AGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYIALPPLYK LEKGQGKNVDIKYSWTDEELQKNVKEFGKGYSLQRFKGLGEMNADQLWETTMNPNTRTLI RVKIDDAALAEHRVTTLMGDKVAARRKWIDENVKFKLGEDASILENQ >gi|308169796|gb|AEHR01000025.1| GENE 3 2730 - 5225 2546 831 aa, chain + ## HITS:1 COG:SPy0910 KEGG:ns NR:ns ## COG: SPy0910 COG0188 # Protein_GI_number: 15674931 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 10 806 4 810 819 826 53.0 0 MTNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNT FDKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPA AMRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGY ATEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRG RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKK SVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTEK QAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKEF GSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSADNGLPSGD EVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFD INNLNSDLIFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDS DNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLG IVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPHRIVAALIYTQNHDINIKTSSDRT IKIRTNDYPVGDRYSNGSFVVDTISDGVPVALKLGMPLAEELGHDVSDLFD >gi|308169796|gb|AEHR01000025.1| GENE 4 5304 - 6239 1074 311 aa, chain + ## HITS:1 COG:SP1534 KEGG:ns NR:ns ## COG: SP1534 COG1227 # Protein_GI_number: 15901378 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 309 1 309 311 330 56.0 2e-90 MTKELIFGHQNPDTDAIGTAIAFSYLQNKLGYDTEAVALGNPNDETQYALDKFGFKAPRV VKTVKNEVDSVMLVDHNEPQQSVADIDQVNVSWVVDHHRIMNFNTANPLYYRAEPVGCTS TVVWKMYKENGVEIPANIAGIMLSAIISDTLLLKSPTTTQDDKNAVEFLAKVAGVDYQEY GLSLLKAGTNIASKTEKELINLDAKSFELNGHIVRIAQINTVDLPEAMERKAAFMKEMQN ASASDNYEMFMLVITNILDSNSEAIVVGTDECKLLFEKAFDKKLVDSSVALPGVVSRKKQ VVPPLTKAFAN >gi|308169796|gb|AEHR01000025.1| GENE 5 6360 - 6956 727 198 aa, chain + ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 7 195 3 193 194 223 62.0 2e-58 MSKENVFPQIAPEQEVGPVVRITTSYGDITIKLFEKEAPMTVENFLQLAKKDYYNNTIFH RVISDFMIQGGDPKGNGTGGTSIWGHSFEDEFSDVLFNIRGALSMANSGPNTNGSQFFIV QNKTMPKRYLKDMESAGYPNEIINAYKNGGTPWLDHRHTVFGQVIKGMDVVDQIAKAPRD RANDKPLEDIKIINIVEE >gi|308169796|gb|AEHR01000025.1| GENE 6 7051 - 8025 800 324 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 36 317 4 280 283 199 39.0 5e-51 MIFKLLQISFCGIIFTYIKIYAHRKIRSIKEFLVVKIAIVTDSTSDITVQEASDNNISIL PIPVIIDNHTYLDNIDISTKQLFDMQRNGSGFPQTSQPVLGDTMALFDKLHNSGYDAIIV ITLASTISGFFQTVNTISNEHPEYNIIPYDSGITVRLMGYLALTAARLAKKGSTPKEIID HLDALSSTIDEIFVVDDLKNLVRGGRLSNASAFVGSMLQIKPLLTFDDQSHKIVSFDKVR SMKRALKKTISLSEDKINQVNNNQDLRIMIYHSNDIHGAEALFEYFKEAYPQNNIEIQEF DPVIATHLGEKALGVTWIKDIDKM >gi|308169796|gb|AEHR01000025.1| GENE 7 8117 - 9466 1241 449 aa, chain + ## HITS:1 COG:BS_yloA KEGG:ns NR:ns ## COG: BS_yloA COG1293 # Protein_GI_number: 16078628 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Bacillus subtilis # 1 427 3 435 572 269 37.0 7e-72 MPFDGLFIHSLLKTLTTNLKKARLSKIYQPFDNDLILIFRNQGINYKLLISINAQHPRMH ITTKNIINPDTASTFVMVLRKYLEGAILNEIKQVGMERIINLYFSNRNEFGDETNFVLSV ELMGRHSNVILYNKATNKIIDLLKRINPEDNRVRLLLPHADYQLPPLITGIDGSTITQSE FARLLAKYTTPLDMVNKFNGLDSDDKKELLGYFNNDFSFDALKLFMSNFDKPQGYVLQTV NHQNKFFCYRPRYLNLYVVLQSEDINKALDDFYQDMANKEWVRQKAKAVENVVNNENKKL SRKLIKLQKQLDSAENSTEFRIKGEILNVYLSSVKPGITTISLPNYYDENKPINIKLDPA LSPAKNAQKYFVKYQKLRNSIKFIKEQIKLTQDNLAYFDTIQTAINNAEPQDIALIREEL INQGYIRQHNKNNNLRKKKLQQIILLVSH >gi|308169796|gb|AEHR01000025.1| GENE 8 9879 - 11546 1356 555 aa, chain - ## HITS:1 COG:lin1949 KEGG:ns NR:ns ## COG: lin1949 COG0458 # Protein_GI_number: 16801015 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Listeria innocua # 4 547 500 1050 1070 305 32.0 2e-82 MIANIDENLIDELLDKHNIKPSYIGIDGTAGLHAPKINAYYSGYEVENEIIPLSQQDKCL IIGLKSFQISQTGEFDYMIYHVAQTLKKHKMQTVIISNNPESISNSYDLCDRVYFEPITL ENILYICKKENIKYLITQFSGKQINQYRQRLLAHGLKLLGQDNLSDVLQQDRKQQIINAN VNPVPALITTNRNEVLSFIETYKFPVLIGGFKNDKKQKSAVVFDKPALNRYIDENDLDKI SISQFIEGNKYEITTISDGKNVTIPGIIEHFEQTGSHASDSIAVFRPQNLTSNKQRLIRD AVVNIAQQIHLRGPINLHILLANEQIYVLQIKTYAGHNVAFLSKSLQQDISAISTEVLLG KNLDELGLANDVWPSNNLIYIKMPVFSYLSYNSVNTFDSKMKTSGSVMGRANRLPFALYK GYEASNLTIPSYGTVFISVKDSDKKSAISVAARFHKLGFQLLATEGTANILAEEGITTSI VEKLQTGNNSLLEKIAQHKINLVINVTNLSDSASHDAIMIKDQALNTHIPVFSSIQSAEN ILNVLETMAMCTQPL >gi|308169796|gb|AEHR01000025.1| GENE 9 11557 - 13047 859 496 aa, chain - ## HITS:1 COG:BH2536 KEGG:ns NR:ns ## COG: BH2536 COG0458 # Protein_GI_number: 15615099 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Bacillus halodurans # 6 491 6 487 1062 248 29.0 2e-65 MPLSREINKILILGAGANIVNKVSDFDILCHQAIQALCEDNVQIILINPNPATIQTDTCK NIHVFLEPLTTDFVKRIIRMEKPDAILTAFGGTPAIELVKKLQKDGIIQDMNIKLLTIND LCLKIKDAQFLYDFLSENKIPVADQWLLHSVSDLSNVLKNAQYPLLITKSVKYRTDKVCS VNNFGMVKDYFQQEAESNRFNLKNYRINEDLSSWEELIFDVIRDNTGNCCFINSMSSLEP VSVNSHDSILIAPILTHNNNQIQELRHCCSKIANLLNINGILTIHFAVKKEGDSFIYKVL SVKPRLTHTSLISYRINIYSVGYVIAKIAIGYNLNEIIDPQSGLNSAIEPINDAFAIKMP YWSFTELSSNYYELGNKSTSSGLALGIGRNFETALMKAIQSTTNIMQNKRIYFNTLNNAS DDEIINKLQHVDNHHLLMLIVAISKGISLSDIQLHTGINCIFLQKIAHIVNVGKKFKQNP EQVNNLIAAKKMRILK >gi|308169796|gb|AEHR01000025.1| GENE 10 13054 - 14115 996 353 aa, chain - ## HITS:1 COG:L43866 KEGG:ns NR:ns ## COG: L43866 COG0505 # Protein_GI_number: 15673583 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Lactococcus lactis # 3 353 4 353 357 235 38.0 1e-61 MARYLILEDGTAYKGTGFGSLTISTGELAIQTANFGYQEAISDPANFGKILAFTTPMIGG SGINAIDYESIVPSIKGIVVNDLAPQSYFEGIDTYQSLDNFLSEKKIPGIYGIDVRSLVH KIKEHKTIKASIMDTDDNHAFDQIKALVLPKNKTAQISTSNAYAAPNVGKTVAVIDLGIK HSLLRALSLRKINCVVLPYNASINDINNIRPDGIIISNGPGKVGELINYINPIFDYFYKK LPILTIGLGYLLLSNYLGLELFDIFPPYNGSNFPVIDQNTHKIWQTSINLNSLVMPVDTK LSFSNIYYDLNSDLIAGYSLLQDKAIGVAFNPEGSPGTFDAKKIFDDFTMMME >gi|308169796|gb|AEHR01000025.1| GENE 11 14120 - 15055 326 311 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 45 294 41 283 285 130 34 2e-29 MNDNISYNLVVKSEESGVRLDKYIATHISTISRTRVQELIKQKLITTNGLQTKLSYKVNT NDKINIEIPYPQPLSLDPENLNLDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNGLIY HTKNLAKCDEIFRPGIVHRIDKDTSGLLMIAKNATARISLEKQLANKINKREYIAIVHDN FKHSSGVIDAPIGRNPYQRQQMAVVASGKKAITHFTVLEQFPGYSLVKCVLETGRTHQIR VHMSYIGHPIAGDPLYGPKKTLNGNGQFLHAKTLGFYHPKTNQWLEFSISEPQIFAKQLY LLRKKLTNNLV >gi|308169796|gb|AEHR01000025.1| GENE 12 15063 - 15539 381 158 aa, chain - ## HITS:1 COG:L0335 KEGG:ns NR:ns ## COG: L0335 COG0597 # Protein_GI_number: 15672979 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Lactococcus lactis # 13 157 7 148 150 100 39.0 8e-22 MKKYHIIDNCKYLIISILIIVCDQILKRYIIDNFKLGQSQEIIPGLLSFTYLRNTGAAWN LLAGKMNLFYIISILALIVVIYYLFSLKYSHRIFKFGLAMVLGGIVGNFIDRLIFKYVID MFDLDFINFNIFNLADCAITFGVIFIFYYFVFLVEKEN >gi|308169796|gb|AEHR01000025.1| GENE 13 15540 - 17216 1998 558 aa, chain - ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 558 1 556 556 566 52.0 1e-161 MYSDIEISQKNKPIKITDIAHKLGLSGNDLDLYGNYKAKIHWDAIKKAKHNSKLGKLILV TSISPTPAGEGKTTISIGLGDAINNQLHKKTIIALREPSLGPVFGLKGGATGGGYAQVVP MEDINLHFTGDMHALTCAIDTLAALVDNYIYQNNECNLDPNSILLKRGIDVNDRTLRKIM IGQGSKFNGIERPASFAITVANELMAILCLSKDINDLKYRIGNILVGFSTTNKPIYVHDL GFEGSIAALLGDALKPNLVQTLEKTPTLIHGGPFANIAHGANSIIATNLALHLSDYVLTE AGFGADLGGQKFMDFVSDHLEKTPDAVVIVATVRALKYQHEKSTTNLANENIESLTAGFV NLKRHMHNMKRYNIPVIVLINKFDTDTDAELRTLQELIRAEGFESEIVNYHDLGSKGGIV AAQKVIDLADNNTKEIIKTYDPTDNIKAKIEKIAKNIYHATNVVYSEKAEKHLENIKKLG KDDLPPIMAKTQISFTDDKKQLGAPDNFTLHVKNVSLKNGAGFIVVYTGNIVDMPGLPKK PAALNIDIDNDGKISGLF >gi|308169796|gb|AEHR01000025.1| GENE 14 17216 - 17563 215 115 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0912 NR:ns ## KEGG: LDBND_0912 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 112 1 112 118 73 41.0 2e-12 MKKHFIFLGTNGLIYYSWLFIILFMSIIFQQETSKNISLACIVLGSIFIISLIYTLLFSY IECKNQTYFLKLPYLKKKRVFKPEFINRYLGLSFYKVNVANSNYFIVIVEKRSNA >gi|308169796|gb|AEHR01000025.1| GENE 15 17656 - 18780 1040 374 aa, chain - ## HITS:1 COG:SP0373 KEGG:ns NR:ns ## COG: SP0373 COG0116 # Protein_GI_number: 15900296 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Streptococcus pneumoniae TIGR4 # 2 370 3 375 385 371 48.0 1e-102 MKNYDLYATMGTGFEAVVAKELQNLGYNTTTENGRVFFKGDIEDIIKTNINLRTADRIKI LLKEFKALDFETLYDQIFNYDWAQLLPVDAKFPVSGRSVKSKLHSEPDIQSIVKKAIVDK MIQQYHRRGFLPETGNLYHLDIYINKDIARISLDTTGASLFKRGYRVEHGGAPLKENFAA GLLKLTPYNGTHPLIDPFTGSGTLAIEAALIARNIAPGLWRNFAFNNFDWVDNNLYKQEI ENAKSKISKNHAPIIASDIDQSILEIAKVNANNAGVLGDIRFKQVAIKDFATDLTNGIII ANPPYGQRLKDKTSARKIYQEMGNVLGNLSSFNQYYLTSDVEFEKYFGKVANKKRKLFNG NIRTDFYQYWHTKK >gi|308169796|gb|AEHR01000025.1| GENE 16 19252 - 19593 490 113 aa, chain - ## HITS:1 COG:lin2002 KEGG:ns NR:ns ## COG: lin2002 COG3599 # Protein_GI_number: 16801068 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 1 101 1 106 113 58 35.0 4e-09 MTSKQNIQLSAEDILKKEFSTKLKGYDQEEVNSYLDIIISDYEHFNQIIDDQQKQISELQ EEIKNSELRDRQNPYENLIKTETTNVSMIQRISTLERKVYALEQRLNMNNQTY >gi|308169796|gb|AEHR01000025.1| GENE 17 19669 - 20208 623 179 aa, chain - ## HITS:1 COG:lin2003 KEGG:ns NR:ns ## COG: lin2003 COG4474 # Protein_GI_number: 16801069 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 178 1 176 181 108 34.0 4e-24 MHCIWISGYRNYELNVFNNNDPKIKVIKIAIKNYLQQKLEDRCLDWVIAGPNLGVEQWSL EVANDLRNFYSDLHTALIFPYTNFGNNWTPSKQEHLSNLRSNVDFYTELSSQNYQNPKQF IQFQEFMLKHTEGALLIYDLEHKGKTFYDYQAIQFYQTQKNYFLDIIDFYDLQDIASES >gi|308169796|gb|AEHR01000025.1| GENE 18 20281 - 20871 546 196 aa, chain + ## HITS:1 COG:BH1703 KEGG:ns NR:ns ## COG: BH1703 COG3331 # Protein_GI_number: 15614266 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Bacillus halodurans # 2 190 3 195 199 199 55.0 3e-51 MVNYPRGIFSSIEHSISHQNKIIFSDRGMTLEQQINESNEYYLNHNIAVIHKKPTPIQIV KVDYPRRSRAVIKEAYFRQASTTDYNGVYRGYYLDFEAKETKNRKSFPLKNFHEHQIIHL QKCLEQKGICFAIIRFVTLNRYFITPASYLIRMWYSNSKKSLSLIDIINNSYEIKSGYNP TLSYLDGVDKFIIDRI >gi|308169796|gb|AEHR01000025.1| GENE 19 20876 - 22765 2070 629 aa, chain + ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 35 609 18 601 719 462 45.0 1e-130 MSENKNSSERNTRSSKYHKNKKEKHLGWLVLKLILLFVVVIIVSGVGLFAYYAKDAPSIS KAQLQSGGTSSLYTTDGKFLLSLGSEKRIYVDDKHIPQKLKDAVISVEDKRFYSEGFGLD PVRIVGSVLVNARAKGVAAGGSTITQQLVKLSVFSTAMSQRTLKRKAQEAWLSMKVEREF SKKQILEFYINKVYMNYGNYGMGTAADFYYGKPLKDLNLAQTALIAGMPNAPISYDPYVY PKKAKYRRDIVLYSMLKNKKISSAQYNAAVKVPITEGLLSKKDKVNSNLRKVDDPYIKEV INEVKEKGFNPYNDNLKITININQHIQQKLYDLANNGEVPFTNDKMQIGATIIDPNNGHV VAILGGRKLPAVQLGLNRAVQTARSTGSTIKPVLDYAPAIEYLKWSTSHIINDSKYIYPG TKIQLYDWDNVYQGKMSIRRALEQSRNVPAVKTLKKVGLARASLFVRKMGINIPSDSGLS VGIGANASTLQMASAYAAFANNGRYYKPQFVSKIETPDGITRNYDSSSTKVMKESTAYMI TDMLKGVLTRGSGTMAKCDNIYEAGKTGTVKYSDEDLVKFPSYAHTPKDSWFIGYTKAYS IGIWTGYDNLKDGTISGIGENSAQLFYKK >gi|308169796|gb|AEHR01000025.1| GENE 20 22765 - 23178 474 137 aa, chain + ## HITS:1 COG:no KEGG:LJ1197 NR:ns ## KEGG: LJ1197 # Name: not_defined # Def: penicillin-binding protein 1A # Organism: L.johnsonii # Pathway: Peptidoglycan biosynthesis [PATH:ljo00550]; Metabolic pathways [PATH:ljo01100] # 1 78 631 708 795 76 51.0 4e-13 MTYLMKNKANSNWKKPSTVVRCRIVNGTERKVAPKHSKNYTWQLFVKGHAPAPDDNDDDV DNIDDSDDKVNTADEDADKDNDVKDDDNQTDNNQGDGDKGKNSSSNSDNNNSNATDSSST TTDNHSDSTSTSSSVNH >gi|308169796|gb|AEHR01000025.1| GENE 21 23230 - 23856 557 208 aa, chain - ## HITS:1 COG:SPy0929 KEGG:ns NR:ns ## COG: SPy0929 COG0177 # Protein_GI_number: 15674949 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Streptococcus pyogenes M1 GAS # 9 197 3 193 218 196 54.0 3e-50 MTSNNLVSITEARQILYKIISLFPDAKGELKWGTPFQLLCAVLMSAQTTDKMVNKVTPIL FKKFPNSKSLAAANISDIEACIKNIGLYRTKAKHLKATATLIENKYQGIVPKNKKALLTL PGVGIKTANVVLAEAFGVPSIAVDTHVMRIAKQFKIVPKSAEPSQIETILENIMPQKDWI KLHHAMIAFGRYKMPAKYRNENPYDFLK >gi|308169796|gb|AEHR01000025.1| GENE 22 23882 - 24517 537 211 aa, chain - ## HITS:1 COG:BH1697 KEGG:ns NR:ns ## COG: BH1697 COG3935 # Protein_GI_number: 15614260 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus halodurans # 4 211 6 206 233 127 33.0 2e-29 MVSFAKYQKLGFTTVSNALLLYYHKLNINEVELALLLHLESFNQKNNRFPSDEMIANRMN FNAIQVSQLIQQLIDKKLIELKQQRDENKRITNYYDLSMLYEKLDTIVDKATYDQTIDSV QLDYQTTDSPLQNIIRQFEIEFGRLLSPIEKQQISSWLVIDHYKPEIINLALRESVLSQV YNFKYIDRILLNWQRHNLTDIKQVKAFLTRY >gi|308169796|gb|AEHR01000025.1| GENE 23 24578 - 25876 1742 432 aa, chain - ## HITS:1 COG:BH1696 KEGG:ns NR:ns ## COG: BH1696 COG0017 # Protein_GI_number: 15614259 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Bacillus halodurans # 6 432 4 430 430 530 57.0 1e-150 MTKLISIKDAPKYVNQEVKMHVWLTDKRSSGKIMFLQFRDGTAFFQAVLLKKNVAEELFE QAKNLRQEASLYVTGTINKDERSHFGYELQISDFQVVTNNDGYPIGNKEHGIDFLLDHRH LWLRSKRPFAIMKIRNVAFKAIVDYFEDNGFIKFDAPILMHSAPEGTTELFHIEYFNSDA YLSQSGQLYGEVGAHAFGKIFTFGPTFRAEESKTRRHLTEFWMMEPEMAWMHQDESLEIQ EGLLKFVTKRILDNCEYELSILGRDPEKLRPTTEGNFARLSYDEAVKMLQDAGRDFKWGD DFGAPDEAFISEQYDRPVFILNYPTAIKPFYMKKNPENPLEYLCADVLAPEGYGEIIGGS EREEDYDTLKAQIEEAGLDLKDYEWYLDLRKYGSVPHSGFGIGFERFLGWICKLDHIREA IPFPRLINRLEP >gi|308169796|gb|AEHR01000025.1| GENE 24 25934 - 26452 382 172 aa, chain - ## HITS:1 COG:no KEGG:LJ1201 NR:ns ## KEGG: LJ1201 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 17 143 14 140 164 110 42.0 2e-23 MINKIDIKFKIKKAIIICISTLLLISLITCLFFFISGHSKRKAAQNAIKIALNKTPITKI DEVYHLSRDITSDSVSGRDKHNHRYYFVYIPSKKKAYYYSAKEGMNKAKISSLFEYLHPN QNTYKINFGWYKDLPVWEISYKKIMVIMAMQYIALRLVRKFFSLIIYKRYFS >gi|308169796|gb|AEHR01000025.1| GENE 25 26449 - 28353 1827 634 aa, chain - ## HITS:1 COG:lin2013_2 KEGG:ns NR:ns ## COG: lin2013_2 COG1199 # Protein_GI_number: 16801079 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 13 615 50 645 668 201 27.0 6e-51 MAFAYNLYSSRKLVIAVPTKILQRQLISQEIKQLLKITNLDLNAEEVKSSRHYLDLDGFF NSIYQTSSDRQTLILQMSILVWLTSTETGDLDELQLTNYDAQIFKQITHPGDARVGTTFS DYDFWNLVRSKQEQADILVTNHAYLANNYSDSIWGQNPFLVIDEAHRFIDNFNNSRSNSL QFEAFWGACTHLQNILFYDKNCIDNRFSNDSRYNIYLENLKYAIIDLIHQINQIQTELFA RIAYSQSRVDKGNNRVDVIFNGSELFSDVATFKRLFNLLQNKIEVVRKNTNEILFLLYEQ ENNIVNTDEANILELQESIDRFDYYSEQIYILLDQLNTKLSLEEEGYVLQISNINDPLTT NINWLMVNSVSEISLLYSYFTKKLFISATMSQNNNFDYIKQDLFLANDTNSYLAKNTFDF SKRLNIIGLKDSQVASDPNSAEFTDFIAKFIAHSVQKMDHILVLFTNLDTIKEVFLQIQT ANELKDFEILAQGLTGSNERLAKRFSIAKRSILLGANSFWEGIDFKNCNINLVVVTKLPF ESPDQADIKLREQKLRNIMTPSQIFENSTLPRAIIRFKQGCGRLIRNEYDKGTLVILDQR LWLKNYGIKFVENVPVTVEYKTFKDLQKALSKDK >gi|308169796|gb|AEHR01000025.1| GENE 26 28547 - 29248 513 233 aa, chain - ## HITS:1 COG:BS_dinG_1 KEGG:ns NR:ns ## COG: BS_dinG_1 COG0847 # Protein_GI_number: 16079297 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Bacillus subtilis # 11 214 6 209 220 161 41.0 8e-40 MVSRAFEHDVFAVVDLETTGTQIKQHDRIIQFGCAIIKDRKITKTYSFLINPEKTIPRAV ENLTGISNQEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGK AIDTVELAQIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEMLPT ATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLIQIKNIVIKNKIRF >gi|308169796|gb|AEHR01000025.1| GENE 27 29272 - 31611 1635 779 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 1 764 435 1218 1232 385 32.0 1e-106 MVGDVKQSIYGFRQAQPHLFLQKYHQFSNEVQSERIILSDNFRSSKNVTQIVNNIFDALL TENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEVNDLDEINLV ITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSENLKLFQAFANAKLPLFVSDIQ NYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEPEFAKIRIASRSTSFYDAII NYIQTSDDELSIKCNNFINELSHFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRR VNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSK GLEFPIVFLIGLNHKYQQADTTNNYVITTKSGLGLTITTADYRIDSLVKSYCNFEKKLQN LEEEIRILYVGLTRAKQKLIMVSTMANENIIPDFQNKLDAHNQLPFIDKSNAISPMSFLG PELFANQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQASVKISNQSRSDLSDKLLATVKT LYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNSKLINSANKYLMPISDQPAFLKK ANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLIENLVLQNKLNPDIIPHLSKNDINWFV TSNFAKAFWEKSDNLYREIEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILF DYKTDFVDRSNLELAINNLKKKYAGQLSLYASALNNLSDKKVKAKYLILLSINKIVKVD >gi|308169796|gb|AEHR01000025.1| GENE 28 31596 - 32891 871 431 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 2 418 9 423 1232 196 29.0 9e-50 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA SEMKLRIKNAIKNKIKEQPDNLFLKQQLAKVDIANISTIDSFCLEVIRKFYYVINLDPNF SIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYNNFAGDREVEAARSMLLELYYVTL AQPNYEAFLKRLDFFYQIDINKNDIISSNLWQEKIKPLLLTNLQNIINKISQYIAEAEHN FNDLNKLIEQLNLFMKSLNYLLAGIEQNLNYDEIRSRFSNCKFVGRLRRSSNWDESSTNL YQEISEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELTFINEFGKLKR KNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVIKE KVKTIYLWWGM >gi|308169796|gb|AEHR01000025.1| GENE 29 32884 - 34188 722 434 aa, chain - ## HITS:1 COG:BS_addB KEGG:ns NR:ns ## COG: BS_addB COG3857 # Protein_GI_number: 16078126 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Bacillus subtilis # 22 431 768 1164 1166 136 26.0 9e-32 MLALTPSNQALLFDNVIQASSFKNKPVNLTPALAQELYGNNINISISQLETFYANSYEYF LTYGLHLHKRFENELTNIQSGNYYHETMDRLVKYLKQHKLDFAELTKDKISVILANIQDE LKTKGSYRELLGDPFNEFLFKCLDRTTKKVVNYWHQNMFQTKFCPLYSELSFGNKEYIAG LSYQFIDKQQKTHHISLRGKIDRVDLLKDCDNEILQLIDYKSSAKKFDFNLFKNGISMQM LSYLSVLQDNSHIFSTNPVNIFGAFYQTMTQKVEHLNNKANISSSFVTKRTPDESVNKLK YNGLFILDDNLNISQIDANLDTPSTYSKIYSNLRIDKDNNLISANGISRNDFSLLEQYNK LLIINAAKSILNGDIKLNPYKYMDTTPLTFSDYNDIYFFDDMLPENNYHHILKADKKTII SEIVDEIERNKTND >gi|308169796|gb|AEHR01000025.1| GENE 30 34182 - 36356 1778 724 aa, chain - ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 29 710 28 718 1157 183 25.0 9e-46 MINIITSTQAYDLQNEILNMAVKTYLNNKTKKTFVIVPNHVKFTTEIATLKKIANINKQD SVSVTNLQVLSFSRLAWYFLRNQKIALPEIIDDATSLMILEKIVKNKKDELLLFNNSNNG SLKQIYESIILIHQGNVDLNSISHEAVTEETSRKLHDLQIIYDEFIKMLGDHFTTKDGIQ LILKTVLDKKLSIDNMNFFFCGFSYFSLSELNIVKIIAKKAHLSVFAFKTKDAQINDKVM EGDYDYIVQSTIAKLINFFNVNSLKFSTKEYGYNINLNNKEKLNAIWTGNIPQQGLDLTN YVHLIKADSRYAEINFVAQTIYQQVVFNHYRYKDFLVLAPNLSEYETYLTPIFSQNNISM FNDLQKQMKFHPLVVLIENIADINDMGFKTQDIITILKTRLLIPEWYTDDIKFIADVDLL ENFVLAHNINHQLWKKSFYDFVDNNISHLDQINEKVEKLDKLRQFIIENIDNLITQLHKL TNVQEAVTSFWDFLLKNQINKKLEKWRDTAINNGDLQLAQQPEQIWALLNKLLKDYVLIA EEFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIGMVQNNSFKQVFIIGAVNNSLPKI QNKPGFLNIENINELNNSIDDEQQYIENNQEVNNLDQTYQFGDVLSLASDGVYISYPIIN VSNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSFITTPQASLGYIVYLKIKLMMI LVTC >gi|308169796|gb|AEHR01000025.1| GENE 31 36425 - 37345 1168 306 aa, chain + ## HITS:1 COG:L7866 KEGG:ns NR:ns ## COG: L7866 COG1577 # Protein_GI_number: 15672386 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Lactococcus lactis # 11 303 12 307 310 172 34.0 1e-42 MNKRKVVVKTHGKVILIGEHSVVYGKDAMALPIHALNIDTSVEAYHDGIWMDTLRYQGPY LTAPAEYNGLKHVVKKILSKIPTPCSIKITYTGEIPMERGLGSSAVVALGTAKALNEYFA LKMTAEEITDITNEAETINHGKASGLDAATVQSDYLVFFNKNMGPKVLSEKLGATLLIMD TGELGNTKEAVSSVKYQIEHDIAKKEAIDKLGYLADQTKDYWFKKDAPMVGTIFNEAQHI LANFGLSTTRINNLCNIANQNGAYGCKLSGGGLGGIVIALCPNQEVASSIAQLAINNYEN YWIEEI >gi|308169796|gb|AEHR01000025.1| GENE 32 37360 - 38337 742 325 aa, chain + ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 5 321 7 326 327 238 43.0 1e-62 MKIIARAHTNIALIKYWGKADSSLKIPLMSSISMTLDAFYTDTEFTHNVDLANDMVIMNG KAVDDQASYRIINYVKKLQDIYGFNDHFCIKTENHVPTAAGLASSASGFAALATSFAASY NLNLNRQELSRIARLGSGSATRSIFGGFVEWQKGYDDQTSFAFPINEHPQMDLTLLAIEL DVSPKEISSTRGMKIAQTSPFYQTWLNRNKQEISEMESAIKNNNFTRLGELSELSANEMH SLNLTAMQSFSYFQSTTITIMNLVRNLRKNGIECYYTIDAGPNVKILCQDKNVEDICKAI HNTLDSVKIIKSKFGPGVQIINCDD >gi|308169796|gb|AEHR01000025.1| GENE 33 38349 - 39422 1011 357 aa, chain + ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 354 1 355 358 284 41.0 1e-76 MITEKAPGKLYIAGEYAVLEQHCPAILVALNEFVTVSINKSQGSTGVIHSKQYSQNCIYW SRRGNKMIINNRDNPFEYILSAIKFTEMYCLEKGITLAIYDLHINSELDSPDGKKFGLGS SAAVTVATVKAILHFYGIELDKSLIFKLSAIAHYTVQGNGSAGDIAASVYGGWLAYQTFD KQWLKDELKNNKLSKIVKEQWPGLDIKLLTPPKELKLLIGWSKQPASTAQLVDQTNAKKK FIKEKYNQFLSDSRICVSEMITAFNAGDIKTIQEHIRENRKILANFARMNNISIEIPKLT TLIEIAEKYNGAAKTSGAGNGDCGIVIADSSTNISKLKEMWILNDIKPLDFVIHSIK >gi|308169796|gb|AEHR01000025.1| GENE 34 39435 - 40460 785 341 aa, chain + ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 3 340 5 341 349 216 35.0 3e-56 MSQRSQRKKDHIDLANKYYLPHPDADFSGINLIRPALPESKISSDSIQTTFFHKIASAPF FIEAMTGGSDESYEINRRLAFCAKEENIAMALGSASILEKEPEQLKSFVIAREINPTGIL LANINPLTKPKVAEQIIKELQADALQIHLNAVQEAAMTEGDRDFYWLDNILEIQQLINVP LIIKEVGMGLDPFSVKKLAKLGINYFDVGGMGGTNFVHIENQRTANKDNLFLDDLGLSTV KSLLSNLQEISHVNFIASGGINSSINIFKSLVLGAKYVGIANHFLHLSMQDKNGTALISE IQKLKYQLVTLMALFGINKLDDVKKVKYYLSLELTNFLNQI >gi|308169796|gb|AEHR01000025.1| GENE 35 40495 - 41904 972 469 aa, chain - ## HITS:1 COG:SP1402_1 KEGG:ns NR:ns ## COG: SP1402_1 COG0144 # Protein_GI_number: 15901256 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 3 295 2 280 280 263 46.0 7e-70 MYKIPTEFIDKFTHLLGEKHASELMSAYQESPKKGFRLNPLKYDYTNVKYNLDHKIPYID NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE GMFRKSDDAIKYWSQEYVLTCQSRQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW LMKEKKLKIQTIPKSQGISDGHPEWTIEKFNDIKKTARFWIQDKIGEGQFAALLKKDVSQ CADSNLDMITPPSKKIRSNIKNRIQVISKDEFKLINDILHQFNLPFYLSKQLDRAINKNN HIVIPALSDEKLKSLHIISNGIELGILKKNRFEPSHQLVYILAQVKQNNVYNITNESDFK KYLHGETLQVEHPITYGYVLVAFEHHIFSFGKIGKDSILKNYYPKGLRR >gi|308169796|gb|AEHR01000025.1| GENE 36 41904 - 42869 905 321 aa, chain - ## HITS:1 COG:no KEGG:FI9785_910 NR:ns ## KEGG: FI9785_910 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 309 3 312 325 222 40.0 1e-56 MKKFLLIVTIFLAFVGLAFTISIKQSQNADIILTNNGLSSSYCVYRPKLKLKIRKLLQYL DKNCKSSKLQVQLKSKYDADEILVWANYNIKGQPVIGDNARYFNKAEFKGNVTFAVISAH TPVANIVTSQNNRYLKYEGQYISIIGQLKANDQSEIQQSAYYLTTGIQQQTGNNNLNNYK IIIDGLNKKQAKKVGHFLKAKAIWVNFAQTYNLKHRINPTKKLVFGIICILFIWGISAMI AYNCNVNRRDLAMKKGRHSMIVNILQFNIINFIMICIIYFIVPMVWFYSNSSAVLKLFIF IFIIQSAIYDGIIFFRPKRRQ >gi|308169796|gb|AEHR01000025.1| GENE 37 42871 - 43617 589 248 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_06265 NR:ns ## KEGG: LAC30SC_06265 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 248 1 247 247 229 47.0 1e-58 MTSYLNKMISLVEELHLPLVDEQVLEIKFIIKCLDAKIPLPSAPNMLGIEPDVMDFYKEK LSAIDYQKLELVNQLLNNFRSYISRKYGVWSLANLNTAKEIVDKYNVHSILEIMAGNAYW SAAFSKLGVKAIATDNLEWAKGSCTGDLLFFPVKKLSAVDAIHKYRDVDIIICCWAPNFG SADMDIIEAYNAIQGKKPKLLFLGEKNGATNTARFWKSAKFKKSCELNSINHTISSFDFI DERFFEIK >gi|308169796|gb|AEHR01000025.1| GENE 38 43705 - 44307 503 200 aa, chain + ## HITS:1 COG:lin1310 KEGG:ns NR:ns ## COG: lin1310 COG0681 # Protein_GI_number: 16800378 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 41 198 28 178 180 125 43.0 7e-29 MNNYQAKHASNNQKDEPKAVPFYKSCLQVIFLSVIFLGCYYLLFTFVLANESVSGLSMQP TFENNDRLIAVRHTNLQRGDVVILKAPDNPGAFYIKRIIGMPGDTVSSKNDITYINGKPL REKYLDEYKNSLPKGQLYTNNFSLKKLFNVSRVPKNSYFVMGDHRNISKDSRIIGFIKKK DIVGEVKLRYFPINKIQIFK >gi|308169796|gb|AEHR01000025.1| GENE 39 44323 - 44508 216 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259500604|ref|ZP_05743506.1| ## NR: gi|259500604|ref|ZP_05743506.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners DSM 13335] # 1 61 6 66 66 85 98.0 1e-15 MLNQNIADLIINYELQHNLTDNTLAFKSHISVEKIHQLKTTGNNNISDDDINRILQYIEK N Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:46:42 2011 Seq name: gi|308169792|gb|AEHR01000026.1| Lactobacillus iners SPIN 2503V10-D contig00006, whole genome shotgun sequence Length of sequence - 3212 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 6 - 1160 1006 ## COG0499 S-adenosylhomocysteine hydrolase 2 2 Tu 1 . + CDS 1834 - 3211 606 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|308169792|gb|AEHR01000026.1| GENE 1 6 - 1160 1006 384 aa, chain + ## HITS:1 COG:PA0432 KEGG:ns NR:ns ## COG: PA0432 COG0499 # Protein_GI_number: 15595629 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylhomocysteine hydrolase # Organism: Pseudomonas aeruginosa # 100 269 132 293 469 64 31.0 4e-10 MRHNEYLLDKSYFEKVATLFNKGQSNPKKILVVEHAVINSLDFIDYLCEHYEVYFIPKPK SIDRKVLKHLSKTCTILDVSRKELADVDTPNWIKKIVGKDTFAIIDIGGYFVPRLSDIQK QFKGQLVKIIEDTENGYQKYEDKLSNNSISVPILSVARSSLKIEEDFLVGHEIVVKSEIF LADYGTTLLGKKALVIGYGKVGSSIADNLRKRGAIVIVADKRAIRLANALAHGYQITNDI YTELIDVDIVYIANGEKSIDALQLKKLDLKHTLYSFSVTSADDTFKNSQIINELPHYGHN GGYRILKTKSNKTVILANSGNAINFTYSISTLASYVQLTQAEMAVILQKDISGEENQGIV ELNENDREKIAKEWLVEIFKFVKS >gi|308169792|gb|AEHR01000026.1| GENE 2 1834 - 3211 606 459 aa, chain + ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 443 1 436 454 221 36.0 3e-57 MFQEKHSKLLSAIISIGLLSFLGIVVETALNITFPQLTKYFSIPINQVQWLTTGYMLVST SLIPLGSFFLKRFRVVTLFRVSCLSFLVGTLIASFSNSFNLVLLGRLCQGIADGIALPLM FAVILHQVPKKKVGTFMGIGSLVIAFAPAVGPIYGGIIQDTLNWHFLFIILIPMIIVTWL LGELSIEQSSPIHYVPFDVRGGICLTIFLSTALMFIVNLTANSSSLKFNLILLGTVFFSG LLFLLNEKNKSHKLLELALFKNKRFLQLLSAFFLLQFSSLSMSYLIPNVLQILFDQSPGL VGFLVAPAAVIDAVLSVVAGIIYDKTTPSLPIISGCTIIGLTFLGANLFTPSIGGLVLIY MLFMVGLSFSYSNIMTYSLSQLPAGLVNDGNSIYMTVQAYSGAVGIAISSSVISLLQKQQ GSIISGTKLGLSINFLILFFVAVFTISLCLVALRNKVIK Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:47:18 2011 Seq name: gi|308169676|gb|AEHR01000027.1| Lactobacillus iners SPIN 2503V10-D contig00071, whole genome shotgun sequence Length of sequence - 116930 bp Number of predicted genes - 116, with homology - 115 Number of transcription units - 33, operones - 23 average op.length - 4.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 8493 8636 ## HMPREF0424_1196 LPXTG-motif cell wall anchor domain protein - Prom 8615 - 8674 12.9 - Term 8651 - 8695 -0.8 2 1 Op 2 . - CDS 8736 - 10082 1451 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 10128 - 10187 9.5 - Term 10104 - 10144 -0.7 3 2 Tu 1 . - CDS 10189 - 12585 2569 ## COG3957 Phosphoketolase - Prom 12646 - 12705 5.7 - Term 12683 - 12725 4.1 4 3 Op 1 . - CDS 12733 - 13458 849 ## COG2188 Transcriptional regulators 5 3 Op 2 . - CDS 13458 - 14390 1058 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 14417 - 14476 7.2 6 4 Op 1 . - CDS 14493 - 15188 839 ## COG0120 Ribose 5-phosphate isomerase 7 4 Op 2 2/0.000 - CDS 15175 - 15861 736 ## COG0524 Sugar kinases, ribokinase family 8 4 Op 3 . - CDS 15851 - 16114 382 ## COG0524 Sugar kinases, ribokinase family - Prom 16159 - 16218 10.7 + Prom 16136 - 16195 5.0 9 5 Op 1 9/0.000 + CDS 16268 - 16534 378 ## COG3830 ACT domain-containing protein 10 5 Op 2 . + CDS 16552 - 17895 1440 ## COG2848 Uncharacterized conserved protein + Term 17920 - 17978 8.1 - Term 17989 - 18028 5.1 11 6 Op 1 . - CDS 18045 - 18752 807 ## gi|309803132|ref|ZP_07697229.1| hypothetical protein HMPREF9214_0532 12 6 Op 2 . - CDS 18773 - 19132 336 ## gi|309809892|ref|ZP_07703740.1| hypothetical protein HMPREF9215_1044 13 6 Op 3 . - CDS 19119 - 19301 64 ## gi|312871959|ref|ZP_07732041.1| hypothetical protein HMPREF9218_0637 14 6 Op 4 . - CDS 19326 - 19511 182 ## gi|259501621|ref|ZP_05744523.1| conserved hypothetical protein - Prom 19603 - 19662 7.9 - Term 19636 - 19675 6.0 15 7 Op 1 . - CDS 19690 - 20157 601 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) 16 7 Op 2 6/0.000 - CDS 20235 - 21638 1561 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 17 7 Op 3 19/0.000 - CDS 21640 - 22089 502 ## COG0822 NifU homolog involved in Fe-S cluster formation 18 7 Op 4 24/0.000 - CDS 22079 - 23317 1154 ## COG0520 Selenocysteine lyase 19 7 Op 5 41/0.000 - CDS 23283 - 24581 1468 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 20 7 Op 6 . - CDS 24594 - 25385 1002 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component - Term 25405 - 25436 0.2 21 7 Op 7 21/0.000 - CDS 25446 - 26069 700 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 22 7 Op 8 . - CDS 26079 - 27131 1382 ## COG0306 Phosphate/sulphate permeases - Prom 27160 - 27219 11.5 23 8 Op 1 34/0.000 - CDS 27252 - 27992 281 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 24 8 Op 2 . - CDS 27985 - 29184 1072 ## COG0765 ABC-type amino acid transport system, permease component - Prom 29247 - 29306 3.0 25 9 Tu 1 . - CDS 29322 - 29480 63 ## gi|259501631|ref|ZP_05744533.1| glutamine ABC superfamily ATP binding cassette transporter, permease protein - Prom 29503 - 29562 8.0 26 10 Tu 1 . + CDS 29625 - 30260 708 ## COG0572 Uridine kinase + Term 30268 - 30304 3.1 27 11 Op 1 6/0.000 - CDS 30280 - 30846 647 ## COG1564 Thiamine pyrophosphokinase - Prom 30891 - 30950 3.8 28 11 Op 2 10/0.000 - CDS 30977 - 31627 528 ## COG0036 Pentose-5-phosphate-3-epimerase 29 11 Op 3 1/0.000 - CDS 31635 - 32135 368 ## COG1162 Predicted GTPases 30 11 Op 4 7/0.000 - CDS 32203 - 32529 278 ## COG1162 Predicted GTPases 31 11 Op 5 17/0.000 - CDS 32529 - 34382 1749 ## COG0515 Serine/threonine protein kinase - Term 34405 - 34436 -0.3 32 11 Op 6 3/0.000 - CDS 34451 - 35200 895 ## COG0631 Serine/threonine protein phosphatase 33 11 Op 7 . - CDS 35206 - 35613 343 ## COG0144 tRNA and rRNA cytosine-C5-methylases 34 11 Op 8 20/0.000 - CDS 35664 - 36518 666 ## COG0144 tRNA and rRNA cytosine-C5-methylases 35 11 Op 9 4/0.000 - CDS 36508 - 37452 906 ## COG0223 Methionyl-tRNA formyltransferase 36 11 Op 10 1/0.000 - CDS 37475 - 38047 657 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Term 38053 - 38094 -0.5 37 11 Op 11 3/0.000 - CDS 38109 - 39866 1629 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Term 39874 - 39910 5.0 38 11 Op 12 25/0.000 - CDS 39924 - 40142 354 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 39 11 Op 13 . - CDS 40144 - 40770 800 ## COG0194 Guanylate kinase - Prom 40821 - 40880 9.9 40 12 Op 1 . - CDS 40899 - 41189 220 ## gi|259501643|ref|ZP_05744545.1| conserved hypothetical protein 41 12 Op 2 . - CDS 41192 - 41614 524 ## COG1799 Uncharacterized protein conserved in bacteria 42 12 Op 3 35/0.000 - CDS 41637 - 42899 1784 ## COG0206 Cell division GTPase 43 12 Op 4 25/0.000 - CDS 42918 - 44285 1419 ## COG0849 Actin-like ATPase involved in cell division 44 12 Op 5 3/0.000 - CDS 44350 - 45186 810 ## COG1589 Cell division septal protein 45 12 Op 6 4/0.000 - CDS 45215 - 46327 1070 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 46 12 Op 7 28/0.000 - CDS 46330 - 47712 1520 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 47 12 Op 8 1/0.000 - CDS 47726 - 48562 747 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 48 12 Op 9 4/0.000 - CDS 48499 - 48684 197 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 49 12 Op 10 . - CDS 48693 - 50846 2463 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 50 12 Op 11 . - CDS 50843 - 51208 401 ## LBA0804 cell division protein - Prom 51228 - 51287 7.5 51 13 Op 1 29/0.000 - CDS 51346 - 52182 938 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 52 13 Op 2 . - CDS 52185 - 52616 498 ## COG2001 Uncharacterized protein conserved in bacteria - Prom 52664 - 52723 5.0 - Term 52703 - 52759 6.5 53 14 Tu 1 . - CDS 52780 - 53115 247 ## LAC30SC_04000 hypothetical protein - Prom 53246 - 53305 8.3 - Term 53353 - 53405 13.3 54 15 Op 1 . - CDS 53407 - 53934 346 ## LJ0964 rod shape-determining protein MreD 55 15 Op 2 22/0.000 - CDS 53934 - 54782 705 ## COG1792 Cell shape-determining protein - Term 54794 - 54830 4.0 56 15 Op 3 4/0.000 - CDS 54832 - 55875 1466 ## COG1077 Actin-like ATPase involved in cell morphogenesis 57 15 Op 4 . - CDS 55926 - 56108 174 ## COG2003 DNA repair proteins 58 15 Op 5 . - CDS 56080 - 56544 484 ## FI9785_1245 DNA repair protein RadC 59 15 Op 6 . - CDS 56531 - 57253 547 ## COG0637 Predicted phosphatase/phosphohexomutase 60 15 Op 7 . - CDS 57234 - 57875 627 ## COG0285 Folylpolyglutamate synthase 61 15 Op 8 8/0.000 - CDS 57908 - 58498 668 ## COG0285 Folylpolyglutamate synthase 62 15 Op 9 . - CDS 58502 - 61141 3442 ## COG0525 Valyl-tRNA synthetase - Prom 61207 - 61266 8.0 - Term 61152 - 61186 6.0 63 16 Op 1 7/0.000 - CDS 61433 - 62632 1182 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase 64 16 Op 2 3/0.000 - CDS 62661 - 63815 1021 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - Prom 63848 - 63907 7.8 - Term 63828 - 63856 0.7 65 16 Op 3 . - CDS 63916 - 65643 1499 ## COG4477 Negative regulator of septation ring formation - Prom 65850 - 65909 8.6 + Prom 65671 - 65730 7.5 66 17 Op 1 . + CDS 65887 - 66513 979 ## PROTEIN SUPPORTED gi|227520659|ref|ZP_03950708.1| 30S ribosomal protein S4 67 17 Op 2 . + CDS 66556 - 67893 1182 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Prom 68068 - 68127 10.1 68 18 Op 1 . + CDS 68148 - 68432 237 ## 69 18 Op 2 . + CDS 68490 - 68963 593 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 70 19 Op 1 . - CDS 69591 - 70631 1128 ## COG0480 Translation elongation factors (GTPases) 71 19 Op 2 . - CDS 70643 - 71509 543 ## COG0480 Translation elongation factors (GTPases) - Prom 71733 - 71792 6.4 - Term 71832 - 71876 -0.7 72 20 Op 1 . - CDS 71886 - 72800 748 ## SPCG_0169 hypothetical protein 73 20 Op 2 . - CDS 72818 - 73819 663 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 74 20 Op 3 . - CDS 73816 - 75927 1216 ## SPSINT_2115 hypothetical membrane protein 75 20 Op 4 . - CDS 75996 - 78443 1222 ## SPCG_0166 hypothetical protein 76 20 Op 5 . - CDS 78427 - 78657 150 ## SPH_1415 conjugative transposon membrane protein - Prom 78739 - 78798 4.0 - Term 78869 - 78906 3.1 77 21 Tu 1 . - CDS 78908 - 79405 366 ## SPG_1237 Tn5251 hypothetical protein 78 22 Op 1 . - CDS 79522 - 79743 324 ## SPG_1238 Tn5251 hypothetical protein 79 22 Op 2 1/0.000 - CDS 79786 - 80991 781 ## COG2946 Putative phage replication protein RstA - Prom 81016 - 81075 1.9 - Term 81029 - 81075 1.7 80 22 Op 3 . - CDS 81169 - 82554 779 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 81 22 Op 4 . - CDS 82583 - 82966 382 ## SPSINT_2122 hypothetical protein 82 22 Op 5 . - CDS 82985 - 83299 251 ## SPH_1425 conjugative transposon protein - Prom 83433 - 83492 5.6 - Term 83416 - 83458 6.3 83 23 Op 1 . - CDS 83657 - 84850 1170 ## COG0772 Bacterial cell division membrane protein 84 23 Op 2 . - CDS 84867 - 85094 290 ## LGAS_1233 hypothetical protein 85 23 Op 3 . - CDS 85108 - 85371 281 ## COG0759 Uncharacterized conserved protein 86 23 Op 4 . - CDS 85365 - 86381 1088 ## COG1077 Actin-like ATPase involved in cell morphogenesis 87 23 Op 5 . - CDS 86447 - 86680 270 ## LJ0942 hypothetical protein - Term 86691 - 86720 0.5 88 23 Op 6 42/0.000 - CDS 86729 - 87163 622 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 89 23 Op 7 42/0.000 - CDS 87175 - 88617 1795 ## COG0055 F0F1-type ATP synthase, beta subunit 90 23 Op 8 42/0.000 - CDS 88641 - 89594 920 ## COG0224 F0F1-type ATP synthase, gamma subunit 91 23 Op 9 41/0.000 - CDS 89612 - 91123 1703 ## COG0056 F0F1-type ATP synthase, alpha subunit 92 23 Op 10 38/0.000 - CDS 91113 - 91682 418 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 93 23 Op 11 37/0.000 - CDS 91682 - 92182 766 ## COG0711 F0F1-type ATP synthase, subunit b 94 23 Op 12 40/0.000 - CDS 92227 - 92439 392 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 95 23 Op 13 . - CDS 92458 - 93174 478 ## COG0356 F0F1-type ATP synthase, subunit a - Prom 93207 - 93266 4.8 96 23 Op 14 . - CDS 93269 - 93898 933 ## COG0035 Uracil phosphoribosyltransferase - Prom 93926 - 93985 9.3 - Term 93967 - 93995 -0.1 97 24 Op 1 10/0.000 - CDS 93996 - 95012 1117 ## COG0009 Putative translation factor (SUA5) 98 24 Op 2 32/0.000 - CDS 94996 - 95835 331 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 99 24 Op 3 3/0.000 - CDS 95828 - 96916 1483 ## COG0216 Protein chain release factor A 100 24 Op 4 . - CDS 96949 - 97542 693 ## COG1435 Thymidine kinase - Prom 97572 - 97631 10.7 + Prom 97525 - 97584 15.3 101 25 Tu 1 . + CDS 97672 - 99024 1338 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase + Term 99032 - 99076 5.3 - Term 98791 - 98838 4.3 102 26 Tu 1 . - CDS 99027 - 100040 977 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 100259 - 100318 75.5 + TRNA 100167 - 100238 60.3 # Glu CTC 0 0 + TRNA 100243 - 100315 61.2 # Gln CTG 0 0 103 27 Op 1 9/0.000 - CDS 100379 - 101608 839 ## COG1668 ABC-type Na+ efflux pump, permease component 104 27 Op 2 . - CDS 101605 - 102498 1020 ## COG4152 ABC-type uncharacterized transport system, ATPase component - Prom 102527 - 102586 8.9 105 27 Op 3 . - CDS 102590 - 103930 1664 ## COG0166 Glucose-6-phosphate isomerase - Prom 103993 - 104052 8.9 + Prom 104050 - 104109 5.8 106 28 Tu 1 . + CDS 104152 - 106332 1306 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Term 106302 - 106336 1.3 107 29 Op 1 . - CDS 106448 - 107161 496 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 108 29 Op 2 . - CDS 107163 - 107552 383 ## FI9785_1291 hypothetical protein 109 29 Op 3 . - CDS 107555 - 108532 820 ## COG1482 Phosphomannose isomerase 110 29 Op 4 . - CDS 108560 - 109951 996 ## gi|309805664|ref|ZP_07699705.1| hypothetical protein HMPREF9213_0583 - Prom 109988 - 110047 8.3 - Term 109996 - 110044 7.0 111 30 Op 1 36/0.000 - CDS 110083 - 112050 1378 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 112 30 Op 2 4/0.000 - CDS 112050 - 112805 274 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 112844 - 112903 11.1 113 31 Op 1 40/0.000 - CDS 112905 - 113822 559 ## COG0642 Signal transduction histidine kinase 114 31 Op 2 . - CDS 113827 - 114495 670 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 114533 - 114592 6.5 - Term 114518 - 114564 9.0 115 32 Tu 1 . - CDS 114595 - 115887 1446 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 116021 - 116080 8.7 - TRNA 116086 - 116158 81.0 # Thr CGT 0 0 - Term 116230 - 116280 8.5 116 33 Tu 1 . - CDS 116372 - 116929 118 ## SPG_1053 immunoglobulin A1 protease Predicted protein(s) >gi|308169676|gb|AEHR01000027.1| GENE 1 3 - 8493 8636 2830 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_1196 NR:ns ## KEGG: HMPREF0424_1196 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: G.vaginalis # Pathway: not_defined # 1489 2032 809 1329 3173 86 26.0 1e-14 MGEVLKMKLSKNNIQSKLQKEAHQIPHFSIRKLTIGAASVLLSTSLYLNWNNLNALAAEN SSTKHGTYDVNKKQENPPAANESLKTTNKMVDKKLVNQKVNQTDAELKAHIATAENLNSD KITPKTNQQLDLAIATAKTAIQSYSEDAKKDTAHRLKTVVLQAKKEAAEKTKKESVKSVS VDNLKALSDQLFDKTMHLDQTKADKGELQKIIDFGIELDSFLKNKNLKAEQLNNYETNAK RMLALVDKLPKIQINAHGKSMPQSRSYADRDGEDRDFDLKNLSLHKPLSAKEFNSDQFKL QQEKNSAIAFLQYALSWNNNPQNTVVDETAGGNKVKDEEIKENAILGINVANNREQIRQW LDYVFWHKRGMFIVPQSPDGNTTGNDVFALYKPGTFLYGTHNNAKEIPTVKEIHNTVYVK NSLIKDQTGKLVGYHWTVEFNHQHADRKSGHYYFTTPKGQSIVSSNDSKNGVKFADAAIV STDASGHSKTLTGRGYTVDNIWQNATQNDFLPADRVSGTAQGPETYYGKQSWKTYTRNGV NLWWGGGSFSRWNYIGSAHTLKDIIYKHYWQGSNYPQSGCTKLNKDEWGDEAQFTNSRDG IKMGPFIDNLYKYKYDFNKGESSDYQRIDYAQLIQENTDRVYMFESKQDDTNTYKITFDT RIDDPKSTNVHNPYYAAGYHSYENKTTVNYMQWGGLRFKPELSITINGKKNNILVDPQTH NDYVEVHEGEKTKISLNSKNDKQGLAMWSTDYKSTSALSWQLGKADENLFNADYKETPVD ADNNAANPYVHQNARMELSGVVIAKPGSEMNIAWAGSGMPNFTADDITNIYGNKTQMDDG LNAFLPNREIRSVNVRVIPAAAYAQKTKIAIRFKGQQIVLSEQEKQDIKKTIYDANKDHY DIKNGENGITVDNSGNVSFTIQFNAAKHKGDRANMQYRKLTLKPADTLSYTTIDIKPVDG SASFSLNSKNGAIDPTLTVYNHEPYQVKVNATDTTSKMNDFLTNGGTNVTGLSTDHNEYQ KNHRGMQVDDKTPYVLTMNGQGLSKDGKTYKIKFESWDGNDTKTVSQEVKVVVADQAGRY QNKVKGRTWTVEVNDKTADHLKPDNFVDDSTKAMLGKAPSGVAGKTGVTYTFKNGVPAHD HVTKGNTPKDVTVVAKFTDNSTLEIKGKLIVNDTQNPIVEFDTTDHKIVNEGNNNYRLNV YSNEKFDVAIKAHDNSNIVQDLRVKYGNTLPNWISSDEDQVQTKYKSDTKGKRDSKGTSN NPYIIHLTGTVPNNMVNQTYKVSATAWDDVDHTGTANLEIHVLPQCDKYKNLLQGNTQTI EVKEAIPDIKTFVTAKGVKLPNNVKYTYKGTGFDNTNIKEQNAVIKLTFADNSYIDVHAK LNVQDTHLATVQFASTDAHVKVSDNKYIQSTKPSDTKQSSVTITAYVNEQFGVNVNANDN SGHIQDVLLSKDNGSLAWMTSNDRDYQQHNRYKAVSESNPYQIQLTGTPTTKGTSTAVIK TWDGANHEGDINFTINVLDQAAQFDGDKLNGATKTVEVNDNVVLSPTDFVDAKTQALLKK AANDVKYTWTTSDGKQPANNTVSTKTNGKYQPSDIKIIAKFSDGSTKTITGHLIVQDTKA PTVKFEMTPNVTGNKITIGTETSNNQKLVTITTYRNEKFSFDVKANDNSKLVSDVKLTGT TLEGTSTDHDSKKDHGTDPYKLTISGSFTPTTQTGQYTRTIQATDKAGNSSNTSFKFYVK EQAAQFDGQTLTGQTQTVTLHTKINPNEVERYVSDATKSLLKKANGNVTYSFKDMKELST DAVSADGKQVHVIATFSDKSTKEIIGTLIVNDKNAPTVNFVKGTNSGPVQIDNQSKTITV YRNEKFNINANVKDDSKVVKDAKLISKDAATHTEFTITTDHDSNHNHGHDPYVLNISGSF TDKAALGNYSRTIHAVDGNNNAGDTNFKFVVKNQSAQFDSDQLNGATKTVEVNSGYTPKA EDFIDKATKQKLDAANGTENYAFAKQPTIDKVKTETVPITVTFSDGSHKVINGTLKVQDT TVPSLKLIKTNSNKKNRVGEITCTPSDSKHKNSTATVVVYRNEQFSIQALATDNSNIIND ARFHGSAADITDNHDVYQAQYRGKKGKVNDPYVVTIEGGFSKDLKFDPNTHTKTIDGSYV RAWDGVDNTNDLKIKFIVKDQSAQFDNDKLNGITKIVEINSANIPQAQDFIDPATLKKLS SAKDGITCTFADGKEPKIDTVKTNEKVSVVVTFSDKSTKTIYGHLTVKDTTAPAITVSKA EKGKCVVNGDQITVYNNEPFNLNVSAVDNSNHVSNITIEGTHEGVSLTSDHKGEGSKAKP YTSVISGTFNDKGKHTITLNATDASNNKGTKKLTVVVKDQADQFDNQTLTGITKTVEVND DSVSLNPEDFVSQDTKNLLGKATKGVKWTFVDNKELDKSKVTSANTGKEVHIKAEFADKT SKTILGHLIVQDTKAPTLELVSSDPKSKDVVVTKGSNNSYNITVYCGREFKLLAKATDNS HVVTDVNIAGGDIKGFSNDHDTYIKNLAKNPKGTSKDPYVLTMTGTFANDFSTGLYERTV TAKDSSGHSTTITMKITLKSQNERFKDEFHGYKVLVPEQLDWQQIFKAENQPVPPKDFVA IPADAPDNLSYRFECDDSGNPCIYVDFADKSSLKLSLETITADAQNKNRVAETIQRNIII KKDGQSTTSVQKAEFIRYIILKSEGISKISSIALDKDLRSASISDEYGQWLTKSKSNDNV VTYSDNAELSKYDAKNIVGYQKVETANDTLEVKPNSNDSINKYLIEKTDENDFSPAKKIP DIVIEYKRLA >gi|308169676|gb|AEHR01000027.1| GENE 2 8736 - 10082 1451 448 aa, chain - ## HITS:1 COG:L196579 KEGG:ns NR:ns ## COG: L196579 COG0446 # Protein_GI_number: 15672373 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 1 445 1 445 446 549 63.0 1e-156 MKFVIVGTNHAGIAAANTLLDNYGKNNEVIMIDRNNNLSYLGCGTALWVGRQISSYKKLF YTKPADFEAKGARISLETTVNKIDFENKIVYATTKNHTEITEKYDKLILAEGSAPIAPDL PGKDLEGIHFLKLFQEGMAVDQELDKSDVKTVAVVGAGYIGVEIAEAARRRGKQVLLFDA AKTCLSSYYDPEFSTLMDQNLRDHGIETHYGELAQEYLGKDGHVCALKTNKGQYQADIVI NCIGFRPNAILGGEHLKRFSNGAYLVNRNFQTSDPDVFAVGDCATNYSNALQATTYIALA SNAVRSGIVGAHNAAGTVIEGAGVQGSNGIEIYDLKLVSTGLSVKAADKFGLSVKYVDYE DKQLPDFMPASENAKVKIRIVYEKKTNRIVGAQLASLYDMHELIHMFSLAIQEGLTMDKL QLLDIFFLPHYNQPYNYVTMAALKADKN >gi|308169676|gb|AEHR01000027.1| GENE 3 10189 - 12585 2569 798 aa, chain - ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 5 795 15 795 796 915 55.0 0 MNYDSEEYLKSVDAYWRAANYLSVGQLFLMNNPLLKQDLVATDVKPKPIGHWGTIAPQNF IYAHLNRVIKKYNLNMFYIEGSGHGGQVMVSNSYLDGSYTETYPEITQDEKGMAKLFKQF SFPGGIASHAAPETPGSIHEGGELGYCLSHGVGAILDNPDVIAAVEIGDGESETGPLATS WFSDKFINPIHDGAVIPILQINGFKISNPTIVSRMSDAELTQYFEGMGWKPYFISAYNDG QFNGYKPHMQVHHEMAHVLDQVIEEIKAIQTHARETGDSSLPTWPMIIFRVPKGWTGPKF DLDGNPIENSFRAHQIPIPVSQKQMEHKDLLTDWLKSYHPEELFEDTGYPKPIVLQNTLT GVHRMAKNPITNGGLSPKSLNLPDFRKFAVKFDQPGSVEKQDMVEWAKYLDAIAKLNPDN FRGFGPDECKSNRLFDLLDNQKRQWMEKIHQPNDENLNNSGRIIDSQLSEHQAEGWLEGY VLTGRHGFFATYEAFGRVVDSMLTQHFKWLRKAKEQAWRRYYPALNFVDTSTVFQQDHNG YTHQDPGLLTHLFEKGHADLVHEYLPADANSLLAVSDKAFKDRECINILVTSKQPRPQWF SIDEAKRLVDHGLGYIDWASTDHNAKPDVVFASTGTEPTIETLAAIDILHKEFPELKIRY INVIDVMKLMPTSKNNAAISDQEFERLFPIGVPVIFAWHGFKPMMSSIWFERGRGKDDIH IHCYEENGDITTPFDMRVLNELDRFHLVKDAVMMTNLADTNAEFIEQIDRLLDKHHVYIR DYGEDMPEVVSWKWQGLK >gi|308169676|gb|AEHR01000027.1| GENE 4 12733 - 13458 849 241 aa, chain - ## HITS:1 COG:SP2020 KEGG:ns NR:ns ## COG: SP2020 COG2188 # Protein_GI_number: 15901841 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 236 5 236 242 129 32.0 7e-30 MADLVYRTIMHDIKEKIVNKEYDGMRLPDERSLSEHYQVSRSSMKRALELLAQEGIVFKK RGSGTFINPLYLKNRGLFKYEGSNLGITDSFSVPGKSQNIELLDYQVIKTDDDLKQDLFL TSSDFVYKIRRLRLLDDQPFLIETGFIPIKIAPDLNPDILKKSLFNYLEHQKNKRVTKSF LTITVEPSTLEDQVKLMLEPNEPVGIIEGIFFLDDGTPFEVSNMRVHYKYMKYNSFVNLN K >gi|308169676|gb|AEHR01000027.1| GENE 5 13458 - 14390 1058 310 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 6 301 7 301 306 219 41.0 4e-57 MKRIPLIISTDPGIDDAAALTISLFAQELDVRMIVATWGNVSLKHTLDNALRLETFLKTT VPVVKGSAAPLIRDAISAADVHGVSGMVGYQFPEADLSLLKSGNAIELMHQEINKQKEKV TLVALGPLTDFALLFKQYPEDISKIDKLFIMGCNIGRGNYTPLAEYNIACDPEAAAIVFN SGLKIVVAPLEIGRQAAILPDDMSSIKAHGRVGEMLYGILTGINEESVSGGTEIYDATAI GMLLDPQMYTFSRAHVEIELTGKYTYGASVIDFSDKACTKYNAEIAVAVDHKIFTDWFLK VTQSAEMEKK >gi|308169676|gb|AEHR01000027.1| GENE 6 14493 - 15188 839 231 aa, chain - ## HITS:1 COG:L0045 KEGG:ns NR:ns ## COG: L0045 COG0120 # Protein_GI_number: 15674215 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Lactococcus lactis # 7 224 2 218 224 191 47.0 8e-49 MQKTKQDELKQEAAKKAALMVEPNSVLGVGTGSTVAFFIDELAKINREKALNLKAIVTTS NRSRAQLEKQGFKVNELSEVDQIDLTVDGADRVDLNLNGIKGGGGALTLEKNVAVNSKKN IWIVDETKFVDRLKGFALPVEVLPISCEQNFRTFSQEGLLPKYRLDDNGKRYITHYGNFI IDLHVDPIPFPNVLAHYLDSVVGVVEHGLFLNICNEVIIAHSDGKIEIRKR >gi|308169676|gb|AEHR01000027.1| GENE 7 15175 - 15861 736 228 aa, chain - ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 3 211 89 296 304 179 48.0 5e-45 MLTKKQQTGQAYILLQETGQNSIIIQHGANYDLTEADIMQAKDEIQTSDFVIAQFETPLA PTILAFKLAHQAGKKTILNPAPAKANIPEELLKVTDLITPNETESEIITGIRVTDLESMK RSAEFYHQLGIGGVIITLGEKGCFVSTSKVSKLIPAFKVKAVDTTAAGDTFIGALSSELQ ADFANIEASAIYASLSSSFAVQKLGAFPSIPKRDIVEAALKEINYAKN >gi|308169676|gb|AEHR01000027.1| GENE 8 15851 - 16114 382 87 aa, chain - ## HITS:1 COG:YPO0008 KEGG:ns NR:ns ## COG: YPO0008 COG0524 # Protein_GI_number: 16120361 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Yersinia pestis # 3 84 5 86 308 76 45.0 1e-14 MKKVTIIGSINVDNIMHIKALPKPGETVAMSAFSQAAGGKGANQAIASARAGNKTVFVGR VGDDSNGEYMLREFSENEIDTAYINVN >gi|308169676|gb|AEHR01000027.1| GENE 9 16268 - 16534 378 88 aa, chain + ## HITS:1 COG:lin0537 KEGG:ns NR:ns ## COG: lin0537 COG3830 # Protein_GI_number: 16799612 # Func_class: T Signal transduction mechanisms # Function: ACT domain-containing protein # Organism: Listeria innocua # 1 88 1 89 89 60 42.0 5e-10 MNAILTVYGQDKVGIIAQTSTYLAEQKINILDVSQTIMGNNFVMMMSVQLPKGADFMVIN QGLAQIAKNLSVEINLRNNELYDAMHQI >gi|308169676|gb|AEHR01000027.1| GENE 10 16552 - 17895 1440 447 aa, chain + ## HITS:1 COG:lin0538 KEGG:ns NR:ns ## COG: lin0538 COG2848 # Protein_GI_number: 16799613 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 447 1 451 451 609 72.0 1e-174 MEINKIFETSNMISQENLDIRTITMGISLLDCIDSDSDVACQKIYNKIMKNAQNLVKVGR EIEAEYGIPITNKRVSVTPISLIAAACKDQDYVKYAKTLDRAAQELGIDFIGGFSALVQK GYQKGDHILIKSLPQALAETKYVCASVNVGSTKSGINMDAVKEMGDIIVAGSKLNFMTNA KLVVFCNAVEDNPFMAGGFHGISEPDVVINTGVSGPGVVKAALEQIKGQSMDIVAETIKK TAFKITRMGQLVGTIAADKLNVPFGIVDLSLAPTPAVGDSVAEVLEEIGLEQVGTHGTTA CLAMLNDAVKKGGIMACSHVGGLSGAFIPVSEDAGMISAVNNHCLNIEKLEAMTAVCSVG LDMIAIPGNTPASTISAMIADEAAIGMINAKTTAVRVIPVPGKKVGDFVEFGGLLGHAPI MQVNEASSQDMIARGGTIPAPIHSFKN >gi|308169676|gb|AEHR01000027.1| GENE 11 18045 - 18752 807 235 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309803132|ref|ZP_07697229.1| ## NR: gi|309803132|ref|ZP_07697229.1| hypothetical protein HMPREF9214_0532 [Lactobacillus iners LactinV 11V1-d] hypothetical protein HMPREF9214_0532 [Lactobacillus iners LactinV 11V1-d] # 1 235 128 362 362 467 99.0 1e-130 MKGIANVINGDTKVAVCDKPNGNVIRYLAPGTNWKVFKCCDSVKKYGDVHAPKWYNLGGN QWVSEDYVGITTNIRGVGSVYSPKANPTSVLNKPFGKVIKDIDPNVRSWKIFKIYRCPSS MPGVQLRWYNLGGNQWVDGSYMVANITSMEEGIYDLCDYREYKDCPIIKVRCNSNAGIRV WAAPGVKPTSKCLPNGSSWKVLKIYYHNSDVWYNLGGNQWVSKKGTVYLESKFYK >gi|308169676|gb|AEHR01000027.1| GENE 12 18773 - 19132 336 119 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309809892|ref|ZP_07703740.1| ## NR: gi|309809892|ref|ZP_07703740.1| hypothetical protein HMPREF9215_1044 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9215_1044 [Lactobacillus iners SPIN 2503V10-D] # 1 119 1 119 119 195 100.0 1e-48 MKYTKISIFSMLCAGALLSLADIAIGNKDISKVSAATEIANAKNIESTKSNMVISLNGTG QTVDSDKQVAVYDQPNGNVVRYLKPGTNWKILKNIMMLTIIGTILVVINGFVKKILQSS >gi|308169676|gb|AEHR01000027.1| GENE 13 19119 - 19301 64 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312871959|ref|ZP_07732041.1| ## NR: gi|312871959|ref|ZP_07732041.1| hypothetical protein HMPREF9218_0637 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9218_0637 [Lactobacillus iners LEAF 2062A-h1] # 5 60 2 57 57 80 91.0 4e-14 MCDRSPEIRTIISGFLLCLKFEVYITFKKYNISIVLFKKRNYNFRQKMDYYSEVIRYEVY >gi|308169676|gb|AEHR01000027.1| GENE 14 19326 - 19511 182 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501621|ref|ZP_05744523.1| ## NR: gi|259501621|ref|ZP_05744523.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_04112 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 61 1 61 61 72 90.0 9e-12 MSKVIVKSALIVVIVLVAYFILFNSGFRFLDQYPYIKAILIFLAFAITLHNVIRDVRNNK K >gi|308169676|gb|AEHR01000027.1| GENE 15 19690 - 20157 601 155 aa, chain - ## HITS:1 COG:SPy1531 KEGG:ns NR:ns ## COG: SPy1531 COG0783 # Protein_GI_number: 15675430 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pyogenes M1 GAS # 2 151 24 173 175 132 45.0 2e-31 MKYPKTKEILNEAVADLIKLHLVVHQHHWYMRGERFLKLHPYLDEVMDELSEQLDLAAER IVILDGNPCSSLKEVLEKSKIKESEGNYNLTINERFSIIVDDLRQLRDLYQKGIRISAEE GDDSTNDMLILFNTSVEKRIWMMSAELDQAPKNDD >gi|308169676|gb|AEHR01000027.1| GENE 16 20235 - 21638 1561 467 aa, chain - ## HITS:1 COG:SP0871 KEGG:ns NR:ns ## COG: SP0871 COG0719 # Protein_GI_number: 15900754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 13 467 16 470 470 691 71.0 0 MATAEDLVNDDAYQFGFHDNIKPKFSTGRGLTEEIVRKISAEKNEPKWMLDYRLQAYQIY QKMPFPSIGPDLSGLDLENMLYYQKVTDKKYRDWNDVPEDIKLTFEKLGVPQAERKYLAG SAAQYESEMVYHNMKKQFDKLGIIFMDTDSALKEYPDIFKKYFGKIAHPTDNKFAALNCA VWSGGSFIYVPKGVKVNTPIQAYFRLNAENSGQFERTLIIVDQDAHLDYVEGCTAPQYSS DSLHAAVVEVNVLEGAYCRYTTIQNWSDNVYSLETKKAQAQKNATMEWVDGNLGAKVTMK YPSVYLNGEGAKGTMLSIAVAHHGVHQDSGARMLHNAPNTSSSIVSKSIARGGGSTDYRG TVDFSKNSSGSKSHVECDTIIMDDMSSSDTIPTNAIENSNVAMEHEATVSKISEEQLYYL MSRGISERKATEMIIMGFVEPFTQQLPMEYAVELNRLISFQMEGAIG >gi|308169676|gb|AEHR01000027.1| GENE 17 21640 - 22089 502 149 aa, chain - ## HITS:1 COG:BH3468 KEGG:ns NR:ns ## COG: BH3468 COG0822 # Protein_GI_number: 15616030 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Bacillus halodurans # 1 142 1 141 146 131 44.0 4e-31 MGIERLNQLYREVILDYGQHPRNKRKIEHPTLTTDVYNPNCGDKLKLFVCLENDKIVDAS FTGEGCTLSQASADMMTKVIKGKSVEQAISLSKTISAIALGKKQSESQMKALGDAKVLES VMQFPARIKCVTIAWWGLDRILLGLRKEA >gi|308169676|gb|AEHR01000027.1| GENE 18 22079 - 23317 1154 412 aa, chain - ## HITS:1 COG:BS_yurW KEGG:ns NR:ns ## COG: BS_yurW COG0520 # Protein_GI_number: 16080321 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Bacillus subtilis # 4 410 1 404 406 457 54.0 1e-128 MDKIDIEKIRNDFPILKNKINDETLIYLDNAATLQMPKDVLTACDNFYHDAYSNVHRSSH TLAIKATQIYETVRKKVQKFINAADTSEIIFTSGCTASLNLVALSWGESFISAGDEIVIT AMEHHSNLIPWQQLALRKKAKLKFIELTPDGRLDMNDAVQKITSKTKLVAAVHVSNVLGV INPIKKLASLAHKVGAIMVVDGAQAAGHIPIDVQQLEADFYAFSGHKMLAPTGVGVLYGR KYLLEKMTPVMYGGEMIEHVSRFTSSWAEIPFKFEAGTPNIAGVRGLGAAIDYLNKISFK MITEYEQELTDYALNALKKITALTIYGPLTSKERLPIFSFNLDKIHAHDLATILDAEGVE VRAGHHCAEPLMTDLGVIATVRASLYIYNTEKDIDILVEAIEKARNFFNHGN >gi|308169676|gb|AEHR01000027.1| GENE 19 23283 - 24581 1468 432 aa, chain - ## HITS:1 COG:SPy0287 KEGG:ns NR:ns ## COG: SPy0287 COG0719 # Protein_GI_number: 15674461 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 16 422 13 419 420 349 43.0 6e-96 MDDQQASRLRQVAYNHQEPAWFIEKRLAAQKLLLNNIDLPQMQRFKFDNWPFFSKHDIDL QIAESIEKNAVTTNEFNVLQIGQTTCSLNLPQKYQEQGVIFTDIFTALKEYPEMIKKYFM TEVIKVDEDRITAYHQAFVNAGLFLYVPKNVEINIPIKADLVQDSRSETSFNPHLLIVAG QNSKLKFVQHLKTIGSCHNTMNMAVEIWAEDGSHVEFSSLEEIGKNTTLYFNKRANIMRD AYVEWAVGLMNDCNTVGNIDSELIGDGSYAYSKAIAVTTDKQHVGINNRVINRGPHSTGL INQRGVLLDNSRLIFNGIGQIKHGAHGSKADQQNRVLMMSDNAHGDANPLLLIDENDVIA AHAASVGPVDPIQMNYLMSRGIPFDQAERLVIRGFLGAVLDAIPAVDVRHEMINILERKL INGQNRYRKDQK >gi|308169676|gb|AEHR01000027.1| GENE 20 24594 - 25385 1002 263 aa, chain - ## HITS:1 COG:L34806 KEGG:ns NR:ns ## COG: L34806 COG0396 # Protein_GI_number: 15673775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Lactococcus lactis # 1 258 1 253 256 363 69.0 1e-100 MATLEIKDLHVEVQDKEKNFKKILKGVNMVMHTGEIHAIMGPNGTGKSTLSETIMGNPKY HITQGDILLNGESILNMTVDERARKGLFLAMQYPAEVPGVTNSEFLRAAINARRPENDPI PISDFLSELDKNLALLDMKENMIDRYLNEGFSGGEKKRNEILQLLMIKPSFAILDEIDSG LDIDALRVVSRGVNAMRGNQFGALMITHYQRLLDYIVPDIIHVMMDGRVVKDGGPEMAKK LEKEGYAGLRDELGLDIKLVDED >gi|308169676|gb|AEHR01000027.1| GENE 21 25446 - 26069 700 207 aa, chain - ## HITS:1 COG:CAC3094 KEGG:ns NR:ns ## COG: CAC3094 COG1392 # Protein_GI_number: 15896345 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Clostridium acetobutylicum # 5 207 7 210 210 112 31.0 7e-25 MARVKDSYYFETFVECADYSLQAAKLLKEIMTDYDSTMIGENTKKIHFIEHQGDQVKHNL TKVLARAFITPFDREDIAELSQKIDTMTDSIESVGMRLYTNNIKKIRPDALPVISLLINA VEDVKTLLKEMPNFKRNTAFKDLIIRVNSVEEEADKLFIENMHRLSVEESDPMKVLMWRD IYNALERSVDACEYVADTVEMVVLKNS >gi|308169676|gb|AEHR01000027.1| GENE 22 26079 - 27131 1382 350 aa, chain - ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 30 350 20 335 335 185 35.0 1e-46 MTISFSNFLGQVITNPGLAITVFLTLGVIFVNGWTDAPNAIATTVTTRTMRPKTAIVMSA IFNFFGVLIMTQINSSVASTISNMVDFGSDSRHAMIALSAALFSIVVYSVGASYFGIPTS ESHSLIAGLTGAAIAMQNGLKGVNGAEWIKVIYGLFLSLFLGFVLGWLVCKLVILICRNF ERKRTNKYISYAQILGSAAMSFMHGAQDGQKFIGVLLLGIAFANGHSDLVNTFIPIWLMI ICSTVMGVGTSVGGEKIIKAVGMDMVKLEKYQGFASDLAGALCILISTLTGVPISTTHTK TSAIMGVGAVRRLSSINLSVVKDMMLTWVFTFPGCGIISYIMAKIFMAFF >gi|308169676|gb|AEHR01000027.1| GENE 23 27252 - 27992 281 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 230 1 226 311 112 30 6e-24 MTDLIKINDLKKHYGKQSILKGISATVEQGKVISIIGPSGAGKSTFLRCLNGLEKPDDGS ICFEEKNITSINERELDKLRQKMGMVFQNFNLFSNMNVLENIKLAPMKVNKISNEAANQK ALSLLERVGLEDCANKMPSALSGGQKQRVAIARALAMDPDVMLFDEPTSALDPEMVGEVL NVMKELADSGMTMLIVTHEMGFAQHVSDEIWFMADGFLQEKATPEEFFAQPKTKRAQEFL SKVLSV >gi|308169676|gb|AEHR01000027.1| GENE 24 27985 - 29184 1072 399 aa, chain - ## HITS:1 COG:lin2352_2 KEGG:ns NR:ns ## COG: lin2352_2 COG0765 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 191 399 7 215 215 216 50.0 5e-56 MSFDSLLVALETRKVDMVISGLTPTPERKKSVDFSKIYYRPSGEYFLINKNDRAKYHSLI SFKGQKIGAQNGSLQYQLVKKQMPKSHVKGLGKINTLVLALQSGKVSAVVMEELIAKAYA HNNPSLYCFKSDLKEPQAGNAIAVAKNQPDLLKEVNKTVDKVIAKKLVLTKFLPQAAKSM KKSTAKKDPFKYAPYFIKGIELTLVITIFSVLIGVILGTILALMRLSSHLALKIPAICYI ELIRGTPQMVQILFVYFGIGAIIQNMSALLAGIIAIGLNSGAYVAEDIRSGINSLPVGQA EAARSLGLSKAATYRYVVIPQAIKNIWPALGNEFITLLKDSSLVSIIGVAETMYQTQLVQ TSTYQGVFPLVVAMAIYFIMTFTLTRILSYMERRMNYHD >gi|308169676|gb|AEHR01000027.1| GENE 25 29322 - 29480 63 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501631|ref|ZP_05744533.1| ## NR: gi|259501631|ref|ZP_05744533.1| glutamine ABC superfamily ATP binding cassette transporter, permease protein [Lactobacillus iners DSM 13335] glutamine ABC superfamily ATP binding cassette transporter, permease protein [Lactobacillus iners DSM 13335] # 1 51 1 51 498 101 100.0 2e-20 MEKVVYMKKCNLFKIIANLACLMTFLCLFSANAVAADHSSKSILTCIKNKKS >gi|308169676|gb|AEHR01000027.1| GENE 26 29625 - 30260 708 211 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 5 210 3 205 211 243 60.0 1e-64 METQKKPIIIGIAGGSGSGKTTIAMEIYNRFKRKHNDRILKITQDSYYKCNDNLSMTERS KINYDHPDAFDMKLLAHQLNSLINHHAIEMPIYDFTQHTRSKETTHVEPADIILLEGILT LFDKQLRNLMDIKIYVDTDDDIRFIRRLKRDTQERGRSVDSVISQYLATVKPMYHQFIEP TKRYADIIIPEGGENNVAIDMLTTKINAVLS >gi|308169676|gb|AEHR01000027.1| GENE 27 30280 - 30846 647 188 aa, chain - ## HITS:1 COG:SPy0265 KEGG:ns NR:ns ## COG: SPy0265 COG1564 # Protein_GI_number: 15674445 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Streptococcus pyogenes M1 GAS # 2 176 36 208 210 99 38.0 3e-21 MGIVPEVAIGDFDSLKKGELAQLEEYEIDFRYSHPEKDYTDSEQLFKVAFEEYNVDQLDI YGATGGRLDHFLLNIFTFSKSELKKYCEKIRYIDCQNIIMYILPGVKKFTAVAGYNYFAV GNLTAVDDLNISGAKYELKNYYSSNPFVFSSNEFVGLQPIVVSLQSGEGIIIYSKDINRF YTAKKPRN >gi|308169676|gb|AEHR01000027.1| GENE 28 30977 - 31627 528 216 aa, chain - ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 2 215 4 216 218 170 40.0 2e-42 MIAPSILNADNLSLKEQILEVKLAGIKRLHIDIMDGHFVPNLSYGPELIKCITRDFPDME IEIHLMSNNLPVMLPLFANLSCAILEFHLEATDQIDKWIEYVRNKGIKVALAINPDTPVE KIVPFLDKIDQVLLMSVQPGFGGQKFRNEVIDKIVFLKKMMANQGYVIPLEIDGGINDVT ANKVKTAGADIVVAGSYIFKHGMIKDQIDKLKCVMK >gi|308169676|gb|AEHR01000027.1| GENE 29 31635 - 32135 368 166 aa, chain - ## HITS:1 COG:lin1933 KEGG:ns NR:ns ## COG: lin1933 COG1162 # Protein_GI_number: 16800999 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 4 164 132 291 291 146 47.0 1e-35 MNEYQKIGYQYFVDYQDLEQYLQNNIDSDEIWVLAGQSGVGKSTLLNRLKKDISQKTAEI SFALNRGKHTTRQISLFEYGKGYIADTPGFSSIDLSNIKLDELKDLFYEIKHFSKECKFR QCQHINEPKCAVKVALNNHDILDSRYNSYIKIREEIALGRIPEYRK >gi|308169676|gb|AEHR01000027.1| GENE 30 32203 - 32529 278 108 aa, chain - ## HITS:1 COG:BH2503 KEGG:ns NR:ns ## COG: BH2503 COG1162 # Protein_GI_number: 15615066 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Bacillus halodurans # 7 100 4 97 294 87 42.0 7e-18 MLEKIAGIVVSVISGYYDIKTDKGIIRSRARGIFRNLKQKPLVGDRVVVQPDDKGINYLV AVADRTCELQRPALANAEYVLLVMSATQPDFSVDLLDRYFSFFCMEES >gi|308169676|gb|AEHR01000027.1| GENE 31 32529 - 34382 1749 617 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 1 291 22 307 342 319 55.0 8e-87 MANVYLAEDIILCKKVAVKLLRLDLQKDPQTIHRFKLEAQSTSELSHPNIVSILDVGSDD QRHYLVMEYVEGIDLEEYIQRNKPLSLNEAIRIMDQVLSAIICAHQHGVIHRDLKPQNIL MDKMGNIKIVDFGIAVALNKSTMTQTNTAIGSVHYMSPEQARGSITTKQSDIYSLGIILY ELIMGQVPFGGENAVAVALKHFQEPTPSMRQQNIEIPQPLENVVMRATAKDARDRYKSVV EMKKDLDTSLEPSRRFEPPFVAEHNPNKDATIVLPVVDGSVKNTAEIKQNLKDSNKNSAW LSNFKKHKWWWITTAFAFMMIILIFIFALGRKDYVKVPELNNLDEMQAKRVLISRGLRVG KIYHKFSSKIKNNHVINVTPKSGTSIKKYQKVNLIISKGDGLTAVPNVIYEYFEDAQEEL QDLGFKVIKKEIHSSTVEKGVVVEQNLFPGKKVVADKTKIVLTVSKGGKTHKKIKLRDLT GYSLKSLKDYIKDKGLILKVIEEDSSAPQGTVIRQDPEAGTKLSRGDCVTVVVSRDNGNI LIKKYDIRYDSSSDRGNGNHIQVFISDDSHKFSNTYVDTYITTDKTISVPLDFSSSDEAR VRIVQDGKIIVDEDIRK >gi|308169676|gb|AEHR01000027.1| GENE 32 34451 - 35200 895 249 aa, chain - ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 8 241 7 238 246 188 43.0 6e-48 MVEATYFTSVGKVRKTNQDFVKTFKNRNGIIMGVVCDGIGGHQGGDVASNMAVNHLGHNF MMTDFCEAQVAQSWLSVQLKAENDNILRTATKFADLNGMGTTIVLAIIFADQALIAHLGD SRAYLYRDRQLTQLTEDHSLVNELLKMGQITEQEAKNHPQKNIITQTLGVSSTVDPEFSI LEVHTSDIFLLCTDGLTNSLTDEQIQTILVPDGHSLKDKCKKLIDEANRLGGGDNITVCL LDCSEKEGQ >gi|308169676|gb|AEHR01000027.1| GENE 33 35206 - 35613 343 135 aa, chain - ## HITS:1 COG:lin1936 KEGG:ns NR:ns ## COG: lin1936 COG0144 # Protein_GI_number: 16801002 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Listeria innocua # 4 133 308 441 446 136 48.0 1e-32 MKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHLSEIQYNILD HVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHPDFSLAPFEVGNLSKCKMIKIFPDD YNSDGFFIAKFVKRG >gi|308169676|gb|AEHR01000027.1| GENE 34 35664 - 36518 666 284 aa, chain - ## HITS:1 COG:BH2507 KEGG:ns NR:ns ## COG: BH2507 COG0144 # Protein_GI_number: 15615070 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Bacillus halodurans # 4 282 5 287 450 194 39.0 2e-49 MKINARSVALDTLLKIFKQKSYSNLALNNALEKSKLSPIDKALTTQIVYGTVQYKLYLEY QLKSLVKTKLKEDYLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGSQSYRLVN GILRSLVRRGEILPDEQDDVQYMSIKYSYPQWLVKYCLDNFGKAKTISILQAGNMPSVNS IRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLV VDAFNFKGDEKVLDACSAPGGKTAQIAEHLTTGKVFALDIHQKN >gi|308169676|gb|AEHR01000027.1| GENE 35 36508 - 37452 906 314 aa, chain - ## HITS:1 COG:L0362 KEGG:ns NR:ns ## COG: L0362 COG0223 # Protein_GI_number: 15673875 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Lactococcus lactis # 2 310 4 316 319 276 46.0 5e-74 MTSVIFLGTPKFGAVVLQGLIDQGYKIEAVVTQPDKKFGRKQELHQSEVKKVALANNLKI YQPLHLSKSEEMNELLSIRPDFIVTAAYGQFLPTKFLQTAKIKAINVHGSLLPKYRGGAP IQYSLINGDKQTGVTIIEMVKKMDAGEMYGSRAIDISDDDTSGSLFEKLSIIGRDLLLEV IPKIIANQIVPTSQDEDKVVFSPNISKGQEQIKTSMTATQAHNLVRALSPQPGAYILMHN KRYKIWQSEVSAEKCSLESGYLVSKNKEFAISFSNGTILKILNIQPTGKKPIAIKDFING QGNQFKVGEKIVED >gi|308169676|gb|AEHR01000027.1| GENE 36 37475 - 38047 657 190 aa, chain - ## HITS:1 COG:L0292 KEGG:ns NR:ns ## COG: L0292 COG1198 # Protein_GI_number: 15673879 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Lactococcus lactis # 1 190 590 779 779 200 51.0 1e-51 MIAKGLDFPNVTLVCVVNADIGLAVSNYNASEKTFDLLTQVAGRAGRADKEGLVLIQTYN PDHYAIKLASVQDYEQFYQSEMRYRYIGNYPPFYFTTLVSIVSHNEPLAAKQAFLIKRLL TKKLSQATIVLGPTPSAIGKINNQYFYQILVKYKKEPYLAETLSYIQNYAQDIAKKDINV YIDQEPENIM >gi|308169676|gb|AEHR01000027.1| GENE 37 38109 - 39866 1629 585 aa, chain - ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 3 584 5 585 797 509 46.0 1e-144 MFAEVIVDVAAKQTDKTFEYKIPSELKNVAVGSRVVVPFGRRKVQGFVVEIHAEANYQGE LKELSLVLDDQIPLIPELVKLSEVLARKLFTYRISILQAMLPSMLKAGYKKNIVPLTDSA RELPIFNGKAIDAATVRSNTDILLINKLLATKAAKIDYVVKNKASHKKDLIYSISNPKKD YLEILANLRTNAFKQKILLNDIIENYESYPKRQQELANLGIKSDVLRNAVNNNWLQKQEV DVYRDPTAADMIHASKVVQLNVEQQAALDQINAQIVRKNAKTFLLEGITGSGKTEVYLHA IAECLKNNKSALMLVPEIALTPQMVNQVKSRFGKDVAVLHSALSEGEKYDEWCRIRNQET HVVVGARSAIFAPLTNIGLIIIDEEHEASYKQDNTPRYHARDVAILRSEYNHCPLVLGSA TPSLYSRARAQKGVYHLLRLNNRANNKELPKVQIIDLKKAMFAGTQFDISVDMLNVIKKT IAKKEQVILLLNRRGFSNFMLCRECGYVLQCPNCDISLNYHKDINQMKCHYCGYEINKPY VCPKCHSKHIIFLGSGTQKIQEELINMIPNVRILRMDIDTTTKKR >gi|308169676|gb|AEHR01000027.1| GENE 38 39924 - 40142 354 72 aa, chain - ## HITS:1 COG:SP1737 KEGG:ns NR:ns ## COG: SP1737 COG1758 # Protein_GI_number: 15901569 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pneumoniae TIGR4 # 6 70 4 67 103 60 56.0 9e-10 MKITYPSIDKLLDKVNSRYSLSVLAAKRSHELQSGEPGALLSYKSSKALGQALEEIAAGK VTIDPEHQTKID >gi|308169676|gb|AEHR01000027.1| GENE 39 40144 - 40770 800 208 aa, chain - ## HITS:1 COG:SPy1632 KEGG:ns NR:ns ## COG: SPy1632 COG0194 # Protein_GI_number: 15675507 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pyogenes M1 GAS # 5 206 1 202 211 235 58.0 5e-62 MGVNMSNKGLLIVLSGPSGVGKGTVKTEMVRQQAFPFEYSVSMTTRKPRQGEVDGKDYFF VNEERFKNAVANKELLEYNQYVGNYYGTPLAPVKEMLNMGKDVLLEIDVNGAKQVRSLMP DGVFIFLTPPDLHELKHRIVNRGTDSDKAIDLRMQQARQEILMMQDYDYAVVNDTVANAV DHIKAIVESEHVRIARVIDDYRNMVKED >gi|308169676|gb|AEHR01000027.1| GENE 40 40899 - 41189 220 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501643|ref|ZP_05744545.1| ## NR: gi|259501643|ref|ZP_05744545.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] Cell division membrane protein [Lactobacillus iners AB-1] YGGT family protein [Lactobacillus iners SPIN 2503V10-D] YGGT family protein [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] YGGT family protein [Lactobacillus iners SPIN 2503V10-D] YGGT family protein [Lactobacillus iners SPIN 1401G] # 1 96 1 96 96 108 100.0 9e-23 MLRYLFFYFLLIVHYIAYIYGLLIVVDALFSWVDFLYRSVVGKLINRIVNPYIALFRIKP IMKISYSFGIDLSPLIGILLLWIIQNITFRLMVQIL >gi|308169676|gb|AEHR01000027.1| GENE 41 41192 - 41614 524 140 aa, chain - ## HITS:1 COG:BS_ylmF KEGG:ns NR:ns ## COG: BS_ylmF COG1799 # Protein_GI_number: 16078603 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 24 139 32 146 149 93 43.0 9e-20 MAFEKLTKMLGISDEDEYEDDSFEESEVSYQEDKRNDKKSNIVSINSVNAGKSRIVLFEP RVYSDAKEVSQNLLNNRAVIINFSRMDEGQSKRIVDFVMGTVYALNGDIQRVGEKIFLAT PPKFVTDGKIADATSEKDNL >gi|308169676|gb|AEHR01000027.1| GENE 42 41637 - 42899 1784 420 aa, chain - ## HITS:1 COG:BH2558 KEGG:ns NR:ns ## COG: BH2558 COG0206 # Protein_GI_number: 15615121 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Bacillus halodurans # 1 334 2 333 382 359 65.0 6e-99 MDFNFDSDNKSAVIKVIGVGGAGGNAVNRMIDEGVQGVSFIAANTDVQALNSNKAENKIQ LGPKLTRGLGAGSHPEVGQKAAEESQQTIEEALKGADMIFITAGMGGGTGTGAAPVIAKI ARETGALTVGVVTRPFTFEGPKRSKDAAEGISQLKQYVDTLVIIANNRLLEMVDKKTPMM DAFKEADNVLRQGVQGISDLITSTDYVNLDFADVKTVMENQGSALMGIGRASGENRTVEA TKMAISSPLLEVSIDGAKQVLLNITGGPDLTLFEAQDASDIVSKTAGDDVNIIFGTSINA NMGDEVVVTVIATGIDNKQDNHQNVAKAKLNKESVESSTANKAVTPADAQKDVNSAKPDM LFDPTSIWKQEKTSSNRVQEKVKGDSWTPFSKSEQQDVLDVETNLDDENDIPFFKHRQNN >gi|308169676|gb|AEHR01000027.1| GENE 43 42918 - 44285 1419 455 aa, chain - ## HITS:1 COG:SP1667 KEGG:ns NR:ns ## COG: SP1667 COG0849 # Protein_GI_number: 15901502 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Streptococcus pneumoniae TIGR4 # 1 387 1 386 457 275 38.0 2e-73 METKDLLVGLDIGTTSVKAVLASSETGKLRVIGTCCEATKGMRHGKIVDIEQTANSIKKV LNGLSQKTNTTCDYLITAVPANMLQLESAHGLINVGEQGKEVDENDVRRVVSVAIKSSIK DTRQALTFLPSKFLIDGRTDVDDPRKMIAHSLEVHGVLVTAPISDLHNISRAIERAGYNN KFFVPTPLGIANVALDEGERTFGSIILDMGGGITTATVIHENKIKYATIDLEGGSDVTKD ISVVLNTSLDEAEKIKRDFGYADPELTSKEDKFPVNVVGANAPKMIDEEYLSEIISARLH QILDRVGKGLKEHAAFNLPGGIVITGGNSEIQGTDDLVKNSYNIKVKMYQSGQPGLKNAI YAVALGVITYAYNLSDINYLANSVIYGSQHTDDVKDIISKSKSVFFKKQRSEDENNRELE YNDNIQQGSHEDDANNGKVKKERKSFIDFIKKFFD >gi|308169676|gb|AEHR01000027.1| GENE 44 44350 - 45186 810 278 aa, chain - ## HITS:1 COG:lin2140 KEGG:ns NR:ns ## COG: lin2140 COG1589 # Protein_GI_number: 16801206 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Listeria innocua # 32 262 14 244 270 62 25.0 1e-09 MSNSKLTKKDPKEQIAKWTEYKKTKIKENIDLPRLGALRRHALWTKLGSIIILSVVGIII CLYFISFKSSVRSVKLVGADEIDGAKVAKIIDVSPKTKVVFSLFKGKEYSKKISRVFPEV DTVKITVTNWNNLILHIKEKRVIGYVKENNHYRKILFNGKVSRQDISEKLVDISKPLFLG YSRQKSIINDLKVYKALPPYFRDKIKMISGKIRRPNQIILLLNDHNIIIGDVNTFAEKIK YYDSIKKQLTQPSIIDMEVGVFSRPLTVKDKEQYEINF >gi|308169676|gb|AEHR01000027.1| GENE 45 45215 - 46327 1070 370 aa, chain - ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 359 1 354 363 338 48.0 9e-93 MRIIFSGGGTGGHIYPILALIERLKERKLTTDDDILFIGTNKGLESKIVPAAKIPFKTLA VQGFNRKHLLRNFKTIKLFLNATKDARKILEEFKPDVVVGTGGYVCGAIVYAAAKMKIPT LIHESNSVVGLANKFLAHYVDKVCYTFDDVVRQFPEKKKLVKTGNPRSQQVLSLNETKID LKKKWNLNPDVFTVLIFGGSRGALAINNIMERSIDELGDKPYQIIWATGQVYYGQIKERL AKHKIAKNIVIVPYIDNMPGLLPQMTCVVSRSGATSLAEFTALGVPAVLIPSPNVTHNHQ EKNAMDLEKAGAALVINENDLNPNNFVSSIDHILLDPNCAQKMSAESKKLCCCDASDKLI YEMQNLINKK >gi|308169676|gb|AEHR01000027.1| GENE 46 46330 - 47712 1520 460 aa, chain - ## HITS:1 COG:BH2567 KEGG:ns NR:ns ## COG: BH2567 COG0771 # Protein_GI_number: 15615130 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus halodurans # 1 458 1 449 450 377 45.0 1e-104 MKIIDKYQDKNILILGLGKSGYSVAKLLLKLGAKLTLNDKRKLDDNAQAIELASLGVKII SGYHPTDIFAKEHFDYLVKNPGIPYENPLVQAAKAANVSIITEPEVALAVSSAPYVCVTG SNGKTTTVMLTQRIMENHLHKLGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMG VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQKNILEQEL SITKANVVTFSEESTQADYYIGEQYLESQADHEIMKISDIKIPGRHNQQNSLVAIAISKI MGASDEDIRSVLSTFTGAKHRLQYVMTYNNRRIYNDSKSTNIEAASVAIPSFSQPEVLIA GGLDRGFTFDELVPLLKKHVKAIVLYGETKYLLADAARKAGIRDIVIVNTLQEAVPRAYD LTNDGDVLLFSPACASWDQFNTFEDRGDFFVKFVKELKTK >gi|308169676|gb|AEHR01000027.1| GENE 47 47726 - 48562 747 278 aa, chain - ## HITS:1 COG:lin2143 KEGG:ns NR:ns ## COG: lin2143 COG0472 # Protein_GI_number: 16801209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 1 272 44 317 324 222 47.0 5e-58 MACKKSRYTYYGWNCFLLSSIIATVAILLSNGKLNKIAIILIIAYLGYGVIGFLDDGLKL LFHRNLGLRAWQKLLGQIIIALVILLIAYSDNFTFKIYIPLFGTVNSYLLFVFFIIIWLV GYSNAVNLSDGLDGLATGLSIISYGTYAYLAYLAHNATVLAFCCSVIGGLVAFLIFNHKP AKIFMGDVGSLALGGGLAAVSIFLNRPWSLLIIGIVYVLETLSVILQVISFQTTGKRIFK MTPIHHHFEMLGWSEWKVDIVFWLVGLLGSIIYLLLAL >gi|308169676|gb|AEHR01000027.1| GENE 48 48499 - 48684 197 61 aa, chain - ## HITS:1 COG:BH2569 KEGG:ns NR:ns ## COG: BH2569 COG0472 # Protein_GI_number: 15615132 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Bacillus halodurans # 9 56 11 58 97 63 58.0 1e-10 MQYGLYPGVISLVITALVLPFFICFMKMKKEGQQIREEGPKWHAKKAGTPTMGGIVFCYQ V >gi|308169676|gb|AEHR01000027.1| GENE 49 48693 - 50846 2463 717 aa, chain - ## HITS:1 COG:lin2145 KEGG:ns NR:ns ## COG: lin2145 COG0768 # Protein_GI_number: 16801211 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 24 716 14 713 752 461 38.0 1e-129 MMNNKKIVRKVSKSHVNRNVVGRLLQISMAFVFLLFVGRFLYLSISKTIAGENISERVSN LYKRDEILKSVRGAIYDNSGNVIAEDSHSFTLYAILDKSSLDYKGKPMYVVDKEKTAEKL STVIPLSEKKILKYLHPKHKAYQVEFGTAGSGISLATKKKIMAMHLPGIHFDETPSRLYP NGRFASHIIGIAQPFNDKKTHSINLIGTMGIEKYFNKVLSGKDGRRIALVDAGEYQLPGG QHSYKAPINGNNIYLTIDSQLQIYLENLLDAVQNKYKPKALTAIVEDVKTGKIMAASQRP TFDPATRKGLNDNWRNILVQDSYEPGSVFKILSITAAIQEGKYNPKEYYRSGSITFNGST IHDWNYTGWGAIPFEQAFPRSSNVGMSILVNRLGRHTWRRYLDNYHIGKKTNITLPDENS GLINIHSQIDQAVTSFGQGINVNAMQMMQVYSALANSGQMLKPQLVEKIVSSSGKVIKRY KKIKVGKPVYSQETAQTTLKLMRDVVEKEYGTGMTYKIPGKSIAVKTGTAQIAGIHGGYL KGDRNYLFSVVGLTPADNPRYCIYITMKQPQIMSDPPETIMSLIFKPLINRVSVSSKVDM MDEQITIPSVKGQSREQAVRLLEKMGLYVETIGSGHKVEAQSILANTKVNPNSKIIIFTG GIIRCPNMKGWTIKQVTQFANISKVKVEVLGKGKVYKQSRIPRSILNRNSKVKVELR >gi|308169676|gb|AEHR01000027.1| GENE 50 50843 - 51208 401 121 aa, chain - ## HITS:1 COG:no KEGG:LBA0804 NR:ns ## KEGG: LBA0804 # Name: ftsL # Def: cell division protein # Organism: L.acidophilus # Pathway: not_defined # 1 121 1 120 120 92 47.0 3e-18 MVDSSARNFRYSELDADNQRNKQVIVRLTSQNEPLSLTEVLFIAFGVVMTLIMMCFMISS NISATNAQRNLSEIQKDIATVQNKNTNLRQEIGELTSANRMNKLAKQYGLQLIESNIRNI R >gi|308169676|gb|AEHR01000027.1| GENE 51 51346 - 52182 938 278 aa, chain - ## HITS:1 COG:SA1022 KEGG:ns NR:ns ## COG: SA1022 COG0275 # Protein_GI_number: 15926762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Staphylococcus aureus N315 # 3 270 2 256 311 290 58.0 2e-78 MEFKHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIEL AKKSFLEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERG FSYRFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIK PITTTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPG GRICVITFQSLEDKIVKKYSKNIQMSIFQEGCRKYQIH >gi|308169676|gb|AEHR01000027.1| GENE 52 52185 - 52616 498 143 aa, chain - ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 138 1 138 143 179 55.0 1e-45 MFMGEYHHNLDSKGRLIIPAKFRDQIGDEIIFTRGMEGCIFGYPQSEWQKIEAKLAKLPL TQRSARKFTRLFYSGAMETEFDKQGRVNLTATLKEHADLIKECVIVGVSNRIEIWSEDRW QKFADEADDNYDDIAEDLDDIEL >gi|308169676|gb|AEHR01000027.1| GENE 53 52780 - 53115 247 111 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_04000 NR:ns ## KEGG: LAC30SC_04000 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 5 109 4 108 109 75 47.0 5e-13 MFVLIFLLPFIGLLCGILVKNLLPHKKISYVELMPPFLIAACQLITSFHKLPSFLPYAFL FYLILVITVAINFVKKNKNIALGRILFSLWRYLILCSFIWYICLLLITIFL >gi|308169676|gb|AEHR01000027.1| GENE 54 53407 - 53934 346 175 aa, chain - ## HITS:1 COG:no KEGG:LJ0964 NR:ns ## KEGG: LJ0964 # Name: not_defined # Def: rod shape-determining protein MreD # Organism: L.johnsonii # Pathway: not_defined # 1 175 1 177 177 134 47.0 1e-30 MVQLKRWYIAIALFFTMVLDGVLSQTFTRFFGNMNVACWLSIILITLISLSDAHNMANVW LCLVVGLVYDIYYVGVIGIYIVAFPLLCYCVQKIAKYIPELFITRLLVCLLGYIGVYLYL LLVLNIIGIIDISLFAIMRQLVESLVMCGILYILSYNLLLKLIVKYPFLNKQIFY >gi|308169676|gb|AEHR01000027.1| GENE 55 53934 - 54782 705 282 aa, chain - ## HITS:1 COG:lin1582 KEGG:ns NR:ns ## COG: lin1582 COG1792 # Protein_GI_number: 16800650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Listeria innocua # 1 278 1 275 295 157 35.0 2e-38 MKKFFKNKKNVFIFLIVVLILSVLTFSTKMRNSREQPPFLQRISNDAMSIVTKVVTYPFN VICDCSNSVVDLFNTQQENDHLKRKIDELGQVKARNTSLENENLALKRTLKLKDTLSDYD LVICNVISRSPDSWTNLLIIDHGARSGIKKNMAVMSDSGLIGRVVEVNSTSSKVELITST DKAANRFAVAAKSKKHKEIHGIITLINDKLAFTPIESKVKVKPGTQVYTSGMGGKSPKGL LVGTIYKISRDSYGLSNILEIKPAGNLNNPSIVTVVKRKVAD >gi|308169676|gb|AEHR01000027.1| GENE 56 54832 - 55875 1466 347 aa, chain - ## HITS:1 COG:lin1583 KEGG:ns NR:ns ## COG: lin1583 COG1077 # Protein_GI_number: 16800651 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Listeria innocua # 16 346 1 333 337 408 67.0 1e-113 MLNSLNIRRIKERFNVFGLGSKNIGIDLGTANTLVYIEGKGIVLREPSVVAKNTQTGEII SVGSDAKEMIGRTPGSIKAIRPMKDGVIADYDTTAAMLKYFIEKTVGNSKPSAMICVPSG VTEVEKRAVIDAARVAGAREAYVIEEPFAAAIGAGLPVMDPTGSMVVDIGGGTTDVATIS LGGIVSSRSTRMAGDKFNAAIAAYIHQNFNLLIGERTAEAIKIQIGSASVEKAKDIESMS IRGRDLITGLPKSMDIDAVDVAKAIQEVVQSIIAAIKETLEETSPEIAADVIDHGIVLTG GGALLKNLQEVISEATKVPVFIAQDPLDCVAIGTGESLKNIEVMRRH >gi|308169676|gb|AEHR01000027.1| GENE 57 55926 - 56108 174 60 aa, chain - ## HITS:1 COG:L0306 KEGG:ns NR:ns ## COG: L0306 COG2003 # Protein_GI_number: 15672989 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Lactococcus lactis # 8 59 173 224 226 59 51.0 1e-09 MQLDFFWSHNHPSEDLTPSEQDIQVTKKISSVSECMGIRFLDHFIVNTGNYLSFKEMELL >gi|308169676|gb|AEHR01000027.1| GENE 58 56080 - 56544 484 154 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1245 NR:ns ## KEGG: FI9785_1245 # Name: radC # Def: DNA repair protein RadC # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 8 152 6 150 203 131 44.0 1e-29 MENTNQYLLSNDEEIINTFIKGLQEINITTFEQLRLECKARNITTFTDFFEYTRSHEAPE TLSLGAELLLNRVKAIKREKMESFCSSSQIGYYLSNVLSGCYQEHLMAVYVDVKNKIIAE KVIFKGTLNQAIIHPRDIFRWAIIYNAAGFFLVT >gi|308169676|gb|AEHR01000027.1| GENE 59 56531 - 57253 547 240 aa, chain - ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 7 199 5 192 221 94 31.0 2e-19 MKTNLNKTFKAVIFDLDGLLVDSEQLYWRANIQAAQELKTPIPRDAYLEIVGASPEKVAE LYHNFFADESLKDKFISRTNELFSLWLAEGQLHLKKGVLQFLQKLKRDQKKCTIASSNTK EVIEQILQKFHIENYFDFFICYDDVKQARLQAKPAPDIYLDAVKRLDMQCNELIVFEDTG IGVEAAQKAGLRCVMIPDLKPATIQDKKLAYLICNNFLEFLKIIIDFFVISIERGFYGKY >gi|308169676|gb|AEHR01000027.1| GENE 60 57234 - 57875 627 213 aa, chain - ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 4 207 212 427 427 72 23.0 4e-13 MDKARKKNAPVLLLGRDFQVECNDDIVVTINKRLFHFKLRPQAEAYDIALALITFATLKF DISVRDIEETINNTIIPARYQIVQKKPLIMIDGAHNIQAVHELISYVRKIAQGRIYILLG MMKDKDIAKVVKLFDPKEKITFTRISYPRAATKSDIEDDLNCHINFIADYRLAYDILKNK LTKDDILVVTGSFYLAGAILNYIHGDRHEDKFK >gi|308169676|gb|AEHR01000027.1| GENE 61 57908 - 58498 668 196 aa, chain - ## HITS:1 COG:CAC2398 KEGG:ns NR:ns ## COG: CAC2398 COG0285 # Protein_GI_number: 15895664 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Clostridium acetobutylicum # 1 191 1 190 431 139 41.0 3e-33 MNVKAIIDFIEHLPRIHQKNDLTYIRRILRELNEPQDKVKTFHITGTNGKGSTAYYLSRL LQKTGQSIGLFVSPYVEVFNERIQINGQPISDELLISAYQAVKNAIRNIQKKYPEFNLVT FEFETAMAFWIFAKQNCDYAVIEVGIGGEHDKTNVIVPQASIITTIGLDHEKVIGPTMFD IAHEKSGVIKKIDQSY >gi|308169676|gb|AEHR01000027.1| GENE 62 58502 - 61141 3442 879 aa, chain - ## HITS:1 COG:BS_valS KEGG:ns NR:ns ## COG: BS_valS COG0525 # Protein_GI_number: 16079861 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Bacillus subtilis # 4 876 8 879 880 1152 61.0 0 MTELAPKYDPRAVEEGRYQTWLDEDLFKPSGDKKAHPYSIVIPPPNVTGKLHLGHAWDTS IQDTLIRFKRMQGYDTLYLPGMDHAGIATQAKVEEKLRKQGQDRHQLGREKFIKQVWDWK DEYASIIKSQWGKMGLSLDYSRERFTLDDGLSKAVRKVFVKLYEEGLIYRGQYIINWDPK LETALSDIEVIHKDDNGAFYHINYPLADGTGSVEIATTRPETMFGDTAVAVAPGDERYKD LVGKELILPLVGRHIPVIEDQHVDPDFGTGLVKITPAHDPNDFLVGNRHNLQRINVMNDD GTMNEQAGKYAGMDRFDCRKALVEDLKNEGYLLKIEPIVHSVGHSERSGVQIEPRLSTQW FVKMKPLADKVLSNQKEDDKVNFVPERFEGTLEHWMENVHDWVISRQLWWGHRIPAWYNK KTGEMVVQEEAPKDIENWDQDNDVLDTWFSSALWPFSTLGWPDEEAADFKRYFPTNALVT GYDIIFFWVSRMIFQSLHFTKRRPFENVVLHGLIRDEQGRKMSKSLGNGIDPMDVVEKYG ADSLRWFLLNGTAPGQDTRFSYTKMDSAWNFINKIWNASRFVIMNLPEDAAAAHMPDVDT FDLSDKWIFDKLNRVVKKVTRLFDEFQFGEAGREMYNFIWNDFCDWYIEISKVALNGTDE ILKKHKQDNLVWILDQILRLIHPIMPFVTEKLWLSMPHNGKSIMVASYPVAHPEFENHVA EQDMEFLIEIIKAVRNIRMEVNAPMSSAIDIMIQLDNSKDKHILLDNRDYVENFLHPKSL VVDTNVVAPKLAKSAVIAGAQIFVPLAELVDLSEEIAKMDKEIDHLQEEVKRCKAKLANK GFVDHAPEAVIEKEKAKQADYESQLAGAVQRLKELKESN >gi|308169676|gb|AEHR01000027.1| GENE 63 61433 - 62632 1182 399 aa, chain - ## HITS:1 COG:L183112 KEGG:ns NR:ns ## COG: L183112 COG0301 # Protein_GI_number: 15672361 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Lactococcus lactis # 1 381 9 389 406 456 58.0 1e-128 MVRYGELSTKGKNRRDFIAKLADNIQKALSTFPAIKIYPKHDRLHIILNGAPFDEIDQKL KKVFGIQTYSPVIKTDRTLSAIEETALDLMKATFKDGMTFKINTRRSDHEFEYDTNQLNA LVGDYLFDHMSDLKVKMKNPDLVLRIEVRKDAIYISNQLLHGAGGMPVGTAGRAVMMLSG GIDSPVASYLAMKRGVKIDMVHFFSPPYTTDKALAKAEELTGILANYCGKINFIAVPFTE IQEQIKEKLPEGYLMTVQRRFMLQLADKIREMRGGLAIFNGESVGQVASQTLESMVAIND VTNTPVLRPVATMDKTEIIALADKIGTFELSIQPFEDCCTIFAPPRPKTKPKLDEARKLQ DRLDSESLIQRALDNIKIIPIYPNQKFINDHFEDSDNLL >gi|308169676|gb|AEHR01000027.1| GENE 64 62661 - 63815 1021 384 aa, chain - ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 381 1 380 381 387 51.0 1e-107 MIYFDNSATTQVNPEALDTYIKVTKDIWGNPSSLHKFGDRSHQLLEASRNQIAKLLGVNS TEIYFTASGSESDNWAIKGTALAKKAFGKHIITSSVEHAAVSHSIRMLENEGFDVTVLPV DSNGLVDPKDLANSIRSDTILVSIMGVNNEIGAIQPIVEISKILEKYPNITFHVDNVQAL GKAIWSRVFTSRVDLMSLSAHKFHAPRGVGILYKKHGKMLVPLIDGGGQESGLRSGTENL PAIAATAKAMRLYLANEKDYVARENQIKEEIINYLSHKPGIHIFSPINDNFVSSILCFAL EGIRGETLVHTLEKYDIYISTTSACSSRSSLESSTLQAMRIDNNIAESAVRLSFDDTNTL EEAKQFIEIFDGIYQHFAKINHLN >gi|308169676|gb|AEHR01000027.1| GENE 65 63916 - 65643 1499 575 aa, chain - ## HITS:1 COG:lin1636 KEGG:ns NR:ns ## COG: lin1636 COG4477 # Protein_GI_number: 16800704 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Listeria innocua # 15 575 4 564 571 170 22.0 9e-42 MTEDGGNHMSAKQTILIVFLVVLLMAVLLGAIIINKYLKNVISSLHDDLAKLDDPLIAED IDRLDKMDLAGASLERFSKDRKNYNRIFSEDVTKSLELLNNAAAANESYKLYTAYEIVKQ VKPKVQEIGTQVLALQKGFMELLKFTRDNKLQLDALKKQYDDKRKYILSTSYDYSLALEA LEDELHAIGCQFESVKNLTIQGDHVEAKRVLQKIRSAITKLEDELPLVKKTSSELLDIFP EQLTEISTTYKSMLKKKFSIVEIDICSTVKQLRNSIEESKKLVSQLKLKDADSKNHSIKE TIDKCYDILTKEYKAKAFVDQHQAKIVKALTHTITNSVKLIKNLEHIDKSYELTHGELDE VRGLSSRIQHLNSEFDVDCQRVSDGGVVYSSIEQKWHKLIDEIIKTDERENKIFKDVDGL YDGEKIANASIEKFKQNVSLIYRKMERRNLPGKPDSFLQLYTLVVNEIAKTADKLDQVRI NLEEISHELIQIQNDIDRLEQDTKEILDSADLVELTMQYSNKYANRNDIIHANKVAYDLY NNKYEYKEALDILAAAIEKVEPGSYKRIESDYYKK >gi|308169676|gb|AEHR01000027.1| GENE 66 65887 - 66513 979 208 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227520659|ref|ZP_03950708.1| 30S ribosomal protein S4 [Lactobacillus gasseri JV-V03] # 1 208 1 208 208 381 87 1e-105 MEDIFMSRYTGPSWKRSRRLGISLSGTGKEISRRNYAPGDHGPGNRTKVSEYGEQLKEKQ KLRWMFGLNERQFRNLFVLAGKIREGKHGVNFMIMLEKRLDNVVYRLGLATTREQARQLV NHGHILVDGKRVDIPSFQVKVGQEISLKEKSKNLQQVKDALEATVSRPAFVTFDESKMTG SLVRLPERDEMEPEIDESLVVEWYNKKL >gi|308169676|gb|AEHR01000027.1| GENE 67 66556 - 67893 1182 445 aa, chain + ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 11 439 3 425 427 476 58.0 1e-134 MKYIIEDVQKMQPLAYRMRPHSLTDVVGQQHLIGPGKIITRMVEAKLLSSMILYGQPGIG KTSIATAIAGATKYAFRKLNAATDSKKDLQIVAEEGKMSGTVILLLDEIQRLDKSKQDFL LPLLESGQIILIGATTENPYIAISPAIRSRCQIFELKPLQSEDISKAIDHALLDPINGLG KENVTLTPEARNILIQKGNGDLRSTLNALELAVLSTKQELMQTNQYHNKLTISESEMLNS VQFKSYNFDSNGDSHYNLLSAFQKSIRGSDTDAALFYLAELCLAGDLKSICRRLLVTAYE DIGLANPAACSRTTLAVQAAEAVGLPEAKIILANSIIELCTSPKSNSAYLAINQAIDLVA NTKDIDIPLSLKDAHFKGAAKLKHGQGYKYPHDFNKDWIAQQYLPDQLINTILFKPKGNS KFEEAIKAQYLKLKDLQTKNLNKSN >gi|308169676|gb|AEHR01000027.1| GENE 68 68148 - 68432 237 94 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSILQLIILLFIMLILLVAYFLYKCQLQNTFLIYNIKDNNNLRNLFKCTSLILVLVAILG LIILFSFDKYYNLITLFLASVVLVLFSLMLNILK >gi|308169676|gb|AEHR01000027.1| GENE 69 68490 - 68963 593 157 aa, chain + ## HITS:1 COG:SP1996 KEGG:ns NR:ns ## COG: SP1996 COG0589 # Protein_GI_number: 15901819 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 1 146 1 146 150 150 52.0 1e-36 MSKQYKNIQIAIDGSKEADVAFKSAVEIAILNDANLEILHVVDTRAFQDVSSFDSEMVEQ VSNDAKTKIEDYYQRALDAGLKHVHYSIEYGSPKNIIAHEFPNEHNIDLIVIGATGLNVI ERLLIGSVTEYVTRTAACDVLVIRQQLAQKQDIKNNK >gi|308169676|gb|AEHR01000027.1| GENE 70 69591 - 70631 1128 346 aa, chain - ## HITS:1 COG:CAC1448 KEGG:ns NR:ns ## COG: CAC1448 COG0480 # Protein_GI_number: 15894727 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 6 345 308 647 652 189 31.0 6e-48 MYTSINGELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPS KPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIEL KEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSF QNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGT ELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDL TFFTNGRSVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT >gi|308169676|gb|AEHR01000027.1| GENE 71 70643 - 71509 543 288 aa, chain - ## HITS:1 COG:CAC1448 KEGG:ns NR:ns ## COG: CAC1448 COG0480 # Protein_GI_number: 15894727 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 2 287 3 295 652 244 43.0 2e-64 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE GNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYS STHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEK >gi|308169676|gb|AEHR01000027.1| GENE 72 71886 - 72800 748 304 aa, chain - ## HITS:1 COG:no KEGG:SPCG_0169 NR:ns ## KEGG: SPCG_0169 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 1 304 8 311 311 558 100.0 1e-157 MKFRKNQNKEKQIPKEKKPRVYYKVNPHKKVVIALWVLLGLSFSFAIFKHFTAIDTHTIH ETTIIEKEYVDTHHVENFVENFAKVYYSWEQSDKSIDNRMESLKGYLTDELQALNVDTVR KDIPVSSSVRGFQIWTVEPTGDNEFNVTYSVDQLITEGENTKTVHSAYIVSVYVDGSGNM VLVKNPTITNIPKKSSYKPKAIESEGTVDSITTNEINEFLTTFFKLYPTATASELSYYVN DGILKPIGKEYIFQELVNPIHNRKDNQVTVSLTVEYIDQQTKATQVSQFDLVLEKNGSNW KIIE >gi|308169676|gb|AEHR01000027.1| GENE 73 72818 - 73819 663 333 aa, chain - ## HITS:1 COG:BS_yddH_2 KEGG:ns NR:ns ## COG: BS_yddH_2 COG0791 # Protein_GI_number: 16077564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 210 332 2 124 124 144 59.0 2e-34 MKLKTLVIGGSGLFLMVFSLLLFVAILFSDEQDSGISNIHYGGVNVSAEVLAHKPMVEKY AKEYGVEEYVNILLAIIQVESGGTAEDVMQSSESLGLPPNSLSTEESIKQGVKYFSELLA SSERLSVDLESVIQSYNYGGGFLGYVANRGNKYTFELAQSFSKEYSGGEKVSYPNPIAIP INGGWRYNYGNMFYVQLVTQYLVTTEFDDDTVQAIMDEALKYEGWRYVYGGASPTTSFDC SGLTQWTYGKAGINLPRTAQQQYDVTQHIPLSEAQAGDLVFFHSTYNAGSYITHVGIYLG NNRMFHAGDPIGYADLTSPYWQQHLVGAGRIKQ >gi|308169676|gb|AEHR01000027.1| GENE 74 73816 - 75927 1216 703 aa, chain - ## HITS:1 COG:no KEGG:SPSINT_2115 NR:ns ## KEGG: SPSINT_2115 # Name: not_defined # Def: hypothetical membrane protein # Organism: S.pseudintermedius # Pathway: not_defined # 1 703 23 725 725 1293 100.0 0 MTVAFTLVIAIFLLAMLGTVVQAAGLVDDTVNVANEYSRYPLENYQLDFYVDNSWGWLPW NWSDGIGKQVMYGLYAITNFIWTISLYVSNATGYLVQEAYSLDFISATADSIGKNMQTLA GVSANGFSTEGFYVGFLLLLILVLGVYVAYTGLIKRETTKAIHAIMNFVLVFILSASFIA YAPDYIKKINDFSSDISNASLSLGTKIVMPHSDSQGKDSVDLIRDSLFSIQVQQPWLLLQ YNSSDIESIGIDRVESLLSTSPDSNNGEDREKIVAEEIEDRSNTNLTITKTINRLGTVFF LFVFNIGISIFVFLLTGIMIFSQVLFIIYAMFLPVSFILSMIPSFDGMSKRAITKLFNTI LTRAGITLIITTAFSISTMLYTLSAGYPFFLIAFLQIVTFAGIYFKLGDLMSMFSLQSND SQSVGSRVMRKPRMLMHAHMHRLQRKLGRSMTTLGAGSAIVTGKKGQSGSGSSARTQADH SRPDGKEKSTLGKRIGQTIGTVADTKDRMVDTASGLKEQVKDLPTNARYAVYQGKSKVKE NVRDLTSSISQTKADRASGRKEQQEQRRKTIAKRRSEMEQVKQKKQPASSVHERPTTRQE QYHDEQTSKQSNIQTSYKESQQAKQERPAVKSDFSSPKVERQGNTVQEKTVQKPATSTTT ADRTSQRPITKERPSTVQRVPLQNTRSRPPIKTATIKKVGKKP >gi|308169676|gb|AEHR01000027.1| GENE 75 75996 - 78443 1222 815 aa, chain - ## HITS:1 COG:no KEGG:SPCG_0166 NR:ns ## KEGG: SPCG_0166 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 1 815 18 832 832 1585 100.0 0 MAYPIKYIENNLVWNKDGECYAYYELVPYNYSFLSPEQKIQVHDSFRQLIAQNRDGKIHA LQISTESSIRSAQERSKNEVTGKLKAVAYDKIDQQTDALISMIGENQVNYRFFIGFKLLL NDQEFSMKSLTVEAKNALSDFVYDVNHKLMGDFVSMSNDEILRFQKMEKLLENKISRRFK IRRLDKDDFGYLIEHLYGQTGTAYEEYEYHLSKKKLDNETLIKYYDLIKPTRCLVEEKQR YLKIQQEDETVYVAYFTINSIVGELDFPSSEIFYYQQQQFTFPIDTSMNVEIVANRKALS TVRNKKKELKDLDNHAWQSDNETSSNVAEALESVNELETNLDQSKESMYKLSYVVRVSAN DLDELKRRCNEVKDFYDDLSVKLVRPFGDMLGLHEEFLPASKRYMNDYIQYVTSDFLAGL GFGATQMLGENEGIYVGYSLDTGRNVYLKPALASQGVKGSVTNALASAFVGSLGGGKSFA NNLIVYYAVLYGAQAVIVDPKAERGRWKETLPEISHEINIVTLTSDEKNKGLLDPYVIMK NPKDSESLAIDILTFLTGISSRDGERFPILRKAIRAVTNSEVRGLMKVIEELRVENTPLS TSIADHIESFTDYDFAHLLFSNGYVEQSISLEKQLNIIQVADLVLPDKETSFEEYTTMEL LSVAMLIVISTFALDFIHTDRSIFKIVDLDEAWSFLQVAQGKTLSMKLVRAGRAMNAGVY FVTQNTDDLLDEKLKNNLGLKFAFRSTDLNEIKKTLAFFGVDPEDENNQKRLRDLENGQC LISDLYGRVGVIQFHPVFEELLHAFDTRPPVRKEV >gi|308169676|gb|AEHR01000027.1| GENE 76 78427 - 78657 150 76 aa, chain - ## HITS:1 COG:no KEGG:SPH_1415 NR:ns ## KEGG: SPH_1415 # Name: not_defined # Def: conjugative transposon membrane protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 76 93 168 168 144 100.0 1e-33 MIEGAFLKYFGIPVAFTWFMSTKTFDGKKPYGFLKSVIAYALRPKLTYAGKKVTLGRNQP QEAITAVRSEFYGISN >gi|308169676|gb|AEHR01000027.1| GENE 77 78908 - 79405 366 165 aa, chain - ## HITS:1 COG:no KEGG:SPG_1237 NR:ns ## KEGG: SPG_1237 # Name: not_defined # Def: Tn5251 hypothetical protein # Organism: S.pneumoniae_G54 # Pathway: not_defined # 1 165 1 165 165 295 100.0 5e-79 MDDMQVYIANLGKYNEGELVGAWFTFPIDFEEVKEKIGLNDEYEEYAIHDYELPFTVDEY TSIGELNRLWEMVSELPEELQSELSALLTHFSSIEELSEHQEDIIIHSDCDDMYDVARYY IEETGALGEVPASLQNYIDYQAYGRDLDLSGTFISTNHGIFEIVY >gi|308169676|gb|AEHR01000027.1| GENE 78 79522 - 79743 324 73 aa, chain - ## HITS:1 COG:no KEGG:SPG_1238 NR:ns ## KEGG: SPG_1238 # Name: not_defined # Def: Tn5251 hypothetical protein # Organism: S.pneumoniae_G54 # Pathway: not_defined # 1 73 1 73 73 103 100.0 2e-21 MNFGQNLYNWFLSNAQSLVLLAIVVIGLYLGFKREFSKLIGFLIIAIIAVGLVFNAAGVK DILLELFNRIIGA >gi|308169676|gb|AEHR01000027.1| GENE 79 79786 - 80991 781 401 aa, chain - ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 68 386 25 340 352 241 41.0 1e-63 MEGFLLNEQTWLQHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWE ALERFNPDAPLEMLFDYVRIRFPTTDVQQVVENILQLKLSYFLHEDYGFYSYSEHYALGD IFVLCSHELDKGVLVELKGRGCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLDLAINDK TGILNIPVLTEKCQQEECISVFRSFKSYRSGELVRKEEKECMGNTLYIGSLQSEVYFCIY EKDYEQYKKNDIPIEDAEVKNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFV DKDDSKPRSDWKLNEEWAWFIGNNRERLKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKL DEINQTQVVKDILDHAKLTDRHKQILKQQSVKEQDVITTKK >gi|308169676|gb|AEHR01000027.1| GENE 80 81169 - 82554 779 461 aa, chain - ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 2 455 11 461 480 439 50.0 1e-123 MKQRGKRIRPSGKDLVFHFTIASLLPVFLLVVGLFHVKTIQQINWQDFNLSQADKIDIPY LIISFSVAILICLLVAFVFKRVRYDTVKQLYHRQKLAKMILENKWYESEQVKTEGFFKDS AGRTKEKITYFPKMYYRLKNGLIQIRVEITLGKYQDQLLHLEKKLESGLYCELTDKELKD SYVEYTLLYDTIASRISIDEVEAKDGKLRLMKNVWWEYDKLPHMLIAGGTGGGKTYFILT LIEALLHTDSKLYILDPKNADLADLGSVMANVYYRKEDLLSCIETFYEEMMKRSEEMKQM KNYKTGKNYAYLGLPAHFLIFDEYVAFMEMLGTKENTAVMNKLKQIVMLGRQAGFFLILA CQRPDAKYLGDGIRDQFNFRVALGRMSEMGYGMMFGSDVQKDFFLKRIKGRGYVDVGTSV ISEFYTPLVPKGYDFLEEIKKLSNSRQSTQATCEAEVAGVD >gi|308169676|gb|AEHR01000027.1| GENE 81 82583 - 82966 382 127 aa, chain - ## HITS:1 COG:no KEGG:SPSINT_2122 NR:ns ## KEGG: SPSINT_2122 # Name: not_defined # Def: hypothetical protein # Organism: S.pseudintermedius # Pathway: not_defined # 1 127 2 128 128 227 100.0 1e-58 MRLANGIVLDKDTTFGELKFSALRREVRIQNEDGSVSDEIKERTYDLKSKGQGRMIQVSI PASVPLKEFDYNARVELINPIADTVATATYQGADVDWYIKADDIVLTKDSSSFKAQPQAK KEPTQDK >gi|308169676|gb|AEHR01000027.1| GENE 82 82985 - 83299 251 104 aa, chain - ## HITS:1 COG:no KEGG:SPH_1425 NR:ns ## KEGG: SPH_1425 # Name: not_defined # Def: conjugative transposon protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 104 1 104 104 203 99.0 2e-51 MELKFVIPNMEKTFGNLEFAGEDKVVQRRINGWLTVLSRSYNLYSDVQRADDIVVVLPAE AGEKHFGFEERVKLVNPRITAEGYKIGTRGFTNYLLHADDMIKE >gi|308169676|gb|AEHR01000027.1| GENE 83 83657 - 84850 1170 397 aa, chain - ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 386 4 388 414 318 47.0 1e-86 MAKVENKSDWFDRVAWGIVLSVFTLALISLYAIWVAASNDPNLGRPKYIVAVQGLWYVVS IAIVIFIMRFDSEQLFKLAPYAYATGIILLIAVLFLYNRSTFNETGAKSWFKLGPLTFQP SEVMKPAFILMLARVVNQHNLRFEHQIKSDWQLIGKIMAYLLPVAILLKLQNDFGTMLVF IAIVGGVILVSGITWKIIFPVYGVAFLLGAVAILLVTTPGGQVILGHFNFRAYQFERINS WLNPFGDTSKGAYQLWLSMKAIGSGQIFGQGFGKINVYVPVRTSDMIFSVIGETFGFVGS CALIVLYGYLIFKMVRITFETKNTFYSYISTGIIMMILFHVFENIGMGIDLLPLTGIPLP FVSQGGSALIGNMIGVGLILSMKWHHKDYIFSRVKDF >gi|308169676|gb|AEHR01000027.1| GENE 84 84867 - 85094 290 75 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1233 NR:ns ## KEGG: LGAS_1233 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 75 1 75 75 102 70.0 7e-21 MSKKLENIEIEVNEQKNASVPTWEVIIPGKKSVGIIEKDNDRYHAITAKSGYSIYSKTLE SAINELLSYFTLHEK >gi|308169676|gb|AEHR01000027.1| GENE 85 85108 - 85371 281 87 aa, chain - ## HITS:1 COG:SPy0370 KEGG:ns NR:ns ## COG: SPy0370 COG0759 # Protein_GI_number: 15674519 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 5 75 12 81 86 95 66.0 2e-20 MVIIYQKCISPLFPPTCRYYPTCSKYMITAISKHGCILGIIMGVARIIRCNPFVRGGVDP VPDFFTIRRNPHPEKYMDPIIAKKFYK >gi|308169676|gb|AEHR01000027.1| GENE 86 85365 - 86381 1088 338 aa, chain - ## HITS:1 COG:BH3739 KEGG:ns NR:ns ## COG: BH3739 COG1077 # Protein_GI_number: 15616301 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 2 332 3 333 334 399 61.0 1e-111 MAKDIGIDLGTANVLINIAGKGIVLNEPSVVAVDTNSNKVVAVGTEAYKMVGRTPGNIRV IRPLKNGVIADFDITEAMLSYFINKLNVKGFMSKPNILICAPTGVTSIEQKAIIQAAEKS GGGRVYLDFEPKVAAVGAGLDIFKPQGNMVIDIGGGTTDIAVLSMGEVVTSRSLRWAGDK MNQAVINYIKNNKNLLIGQCTAEQIKIQIGTAFDADPEKVISVRGRDIIDGLPKQTVVSA TEIQSSLEDGLMSIVAATKEVLEKTPPELSADIIDRGIMLTGGGALLTNIDKLITYYLQV PVLVADNPLEAVANGTGILLKNIQEHSKNRMKNYLLIW >gi|308169676|gb|AEHR01000027.1| GENE 87 86447 - 86680 270 77 aa, chain - ## HITS:1 COG:no KEGG:LJ0942 NR:ns ## KEGG: LJ0942 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 76 18 93 93 64 46.0 2e-09 MKDLGIGALIRIITYLVTIAYSFKVVKCLALEKFIRKGKTNEVKILLIFIAISLGYLVGQ FLINLMYYSMLLKWLFI >gi|308169676|gb|AEHR01000027.1| GENE 88 86729 - 87163 622 144 aa, chain - ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 8 138 4 135 138 116 52.0 1e-26 MVEAEKLLTVTVVTPDGVIYSHRSSKISFRAIDGERTILYNHLPLITPLAIAEVKVKRES KHGVDHIAVNGGYMEFSDNKATIIADSAERARNINVERAQVAKERAEKHIQEAKSHHNDR EMYKAKIALERALNRLHVRENLGK >gi|308169676|gb|AEHR01000027.1| GENE 89 87175 - 88617 1795 480 aa, chain - ## HITS:1 COG:L6563 KEGG:ns NR:ns ## COG: L6563 COG0055 # Protein_GI_number: 15673746 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Lactococcus lactis # 1 465 1 468 469 714 78.0 0 MSKGKILQVIGPVVDVQFPVDKKLPDINNALHVKNTNGDILVLEVTLELGDGVLRTISME STDGLRRGMEVEDTGGPISVPVGKATLGRVFNVLGAPIDGGPEIADDVQRDGIHKDAPKY NDLSTSEEILETGIKVIDLLEPYVRGGKVGLFGGAGVGKTTIIQELIHNIAQEHGGISVF TGVGERTREGNDLYFEMKASGVLAKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGL DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSIQA VYVPADDYTDPAPATTFAHLDATTNLERRLVEQGIYPAVDPLESTSSALDPEVVGKDHYE VAVQVQHILQRYQELQDIISVLGMDELSDEEKLIVARARKIQFFLSQNFFVAEQFTGLPG SYVPIKETIKGFKMIIDGKLDDLPEDAFRNVGPIEDVINKANTMGVVPSDPDAKAMLKAK >gi|308169676|gb|AEHR01000027.1| GENE 90 88641 - 89594 920 317 aa, chain - ## HITS:1 COG:SPy0759 KEGG:ns NR:ns ## COG: SPy0759 COG0224 # Protein_GI_number: 15674807 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pyogenes M1 GAS # 1 317 1 291 291 243 43.0 4e-64 MTESLLELKKKISSIQKTGQITEAMRMVSGVKLNRTEKLNQAYTVYNDHIRQTISHLVSA KIFDEFNKKNVEMCDDEINSLDYSDIFELGKIVDLIQPRKEIKSTGYLVISGDRGLVGSY NNQVIKNMMDIFKDAEIEKRDVKILAVGSIAAQFFKKQNLNVVYEYKGVDDVPNYKQVKD IIQSAIKMYQNGVYDELYVCYTHHVNTLSSAFRVQKMLPISDLDISDEEVVPKDYIVAPS VDSVLRSVLPQFARSMIFGAILDAKTAEHASSMTAMQSASKNAEDVVSRLTTKLNRARQA QITTQITEIVGGANALE >gi|308169676|gb|AEHR01000027.1| GENE 91 89612 - 91123 1703 503 aa, chain - ## HITS:1 COG:lin2675 KEGG:ns NR:ns ## COG: lin2675 COG0056 # Protein_GI_number: 16801736 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Listeria innocua # 1 498 1 498 504 770 76.0 0 MSIKAEELSALIKQQLENYSEKLNVDEVGTVTYVGDGIARAHGLDNVLSSELLEFSNGSY GIAQNLEANDVGIIILGKFDDIREGDQVKRTGKIMEVPVGEALIGRVVNPLGQPVDGLGE IKTTKTRPIESKAPGVMERQSVNQPLQTGIKAIDALVPIGRGQRELIIGDRKTGKTALAI DTIINQKGQNVICIYVAIGQKESTVKNSVQTLKRFGAMDYTIVVQAGPSEPAPMLYIAPY AGTAMGEEFMYNGKDVLIVFDDLSKQAVSYREISLLLRRPPGREAYPGDVFYLHSRLLER SAKLSKKLGGGSMTALPFIQTQAGDISAYIPTNVISITDGQIFLESDLFFAGTRPAVNAG ESVSRVGGSAQIKAMKKVAGTLRVDLASYRELESFAQFGSDLDQATQAKLNRGRRTVEVL KQPLHKTLPVEDEVLVLYALTHGFLDEIPVPDILRYENELYDFFASNHNDLLDVIRTTGN LPDEDKLKAALKDFNEGFSIGKN >gi|308169676|gb|AEHR01000027.1| GENE 92 91113 - 91682 418 189 aa, chain - ## HITS:1 COG:lin2676 KEGG:ns NR:ns ## COG: lin2676 COG0712 # Protein_GI_number: 16801737 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Listeria innocua # 7 178 6 177 179 84 29.0 2e-16 MSLSREEIASRYGMALFEYAKENAKLALVHDEVDELIKVLQENPKFELLMASPLLSSNDK KQILKAVAAEMTVEMANFLNLVLEYGRFADLGCILQAFDKFYDREMNEASGVAISAIALD DEQLAAISKSYANKFNLSNIHLTNQVDANILGGVVLKVGDHIIDGSIKNKLQQIRKQLSI SKRGETIEH >gi|308169676|gb|AEHR01000027.1| GENE 93 91682 - 92182 766 166 aa, chain - ## HITS:1 COG:SP1512 KEGG:ns NR:ns ## COG: SP1512 COG0711 # Protein_GI_number: 15901359 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Streptococcus pneumoniae TIGR4 # 22 166 19 163 164 93 40.0 2e-19 MQIMLAAIKLELGDTLYYLLIFAALLWLVNHFAFGPVSSMMEKRRKKVISDLDDAENKQK KAELLANQREAELKNSKQEATQILSIAKSNAEKTKDGIISAANSEAASIREKATQDAAQA KADALNQAHDAVADISVTIAEKLIGKNLSMADQKDLVDKFIKGLNE >gi|308169676|gb|AEHR01000027.1| GENE 94 92227 - 92439 392 70 aa, chain - ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 1 66 1 66 70 58 51.0 4e-09 MKQLAAALVAGLTALAACWGNGRVISKTIEGMTRQPEIFNELRTNMFISVGLIEAVPILA IVISFLILFL >gi|308169676|gb|AEHR01000027.1| GENE 95 92458 - 93174 478 238 aa, chain - ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 1 238 1 237 238 181 41.0 2e-45 MGEKSIVVNFLGLNFNITNCFSGTLVAIAIFGLVYWLSGQVCLKPGKKQNFLEAIIDFTN GIVKNNVSDSEVQSKLSLYAFTLFLFIFFMNQLGLFLEVKINDQILVKSPTASPLITMTM AMMTLLLSYHFGIKKFGAKGFIANYAKPVGFLLPINVIEEFTNFLTLSLRLYGNIYAGEV LLNLIGEHLAKSAGWATIFASVPLTMIWQGFSIFIGSIQAYVFVTLSMVYINKKVMEE >gi|308169676|gb|AEHR01000027.1| GENE 96 93269 - 93898 933 209 aa, chain - ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 284 66.0 9e-77 MGKFTVLNHPLIQHKLTIIRKKTTGTNEFRQIVGEIGGLMVYEMTRDLPLKNVEIETPIG KTVQKELAGKKLVVVPILRAGLGMVEGVLQMIPSAKVGHIGMYRDEETLKPHEYFFKMPP EVEQRQCIIVDPMLATGGSANLAIGALKKRGVTDIKLAVLVAAPDGVKAVQKENPDVDIY AAAEDEKLMSNGYIFPGLGDAGDRLFGTK >gi|308169676|gb|AEHR01000027.1| GENE 97 93996 - 95012 1117 338 aa, chain - ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 7 331 7 338 345 278 47.0 1e-74 MEGGNNKLNTQIFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGR PSDNPLIVTVADEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGALPDAVTGGLPT AAFRCPQDPLTNELIQTLARPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNGPTKI GLESTIIDLSVDQPVVLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAP SSPVYIVDDPADFAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYF DSNEQIKTIYVQGFAKGNISAAYMNRLNKAASGNHFKK >gi|308169676|gb|AEHR01000027.1| GENE 98 94996 - 95835 331 279 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 1 277 16 289 294 132 35 1e-29 MPSFRTLRTKFIAENPQILAEDVDFVLAERQNLTPSQYRLQLDQDLPKEQLTQIKKDLNK LHKGMSPQYIVGHAWFLGYSIDVHPGVLIPRFETEELVTWALDYLKDNSKVLDLGTGSGA ITVALAKKAECKNINNIVYYASDITDSALRQSEENFLKFNLNDIITRKADVLIGLEKFDL IISNPPYIKNSEKDLMDQNVIKNEPEEALFAGADGLDFYRRFVKQVPKHLNKNGHFFLEF GFSQKDLLAELFAKELPEFTIEFKNDLAGKPRMVHGRWK >gi|308169676|gb|AEHR01000027.1| GENE 99 95828 - 96916 1483 362 aa, chain - ## HITS:1 COG:L0373 KEGG:ns NR:ns ## COG: L0373 COG0216 # Protein_GI_number: 15672577 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Lactococcus lactis # 7 357 4 355 357 398 59.0 1e-110 MDKVMAQLESLLAHYEELQEMMSDPEVINDTKKYMEISKEEADLREVVEKYKLFCNDQSE IANNKEIISHESDSDLIDMAKEENIALEEEVNKLEEEIKILMLPKDPNDDKDIIMEIRGA AGGDEASLFAGDLLRMYQKYAENQGWQMSIIDAEETEVGGFKRVAVMISGDKVYSKLKYE NGAHRVQRIPVTESQGRVHTSTATVAVMPEYEQVDLDLDPKDIRVDVYRSSGAGGQHINK TSSAVRMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDFYESQNQASYDAKRKESVG TGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELEDIISALVLYYQTKQLEKMADD NA >gi|308169676|gb|AEHR01000027.1| GENE 100 96949 - 97542 693 197 aa, chain - ## HITS:1 COG:SPy1140 KEGG:ns NR:ns ## COG: SPy1140 COG1435 # Protein_GI_number: 15675117 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 196 1 188 189 263 61.0 1e-70 MPQLFFRYGAMSSGKTIEILKVAHNYEVQGRKIVLMTSGLDDRSGVGVVSSRIGLHRTAV AIDHDMNIFSYVKEENKKSLNIEHEPLACVLIDEAQFLTRQHVLQCTHIVDDLKIPVMAF GLKNDFQNHLFEGSENLLIFADKIEEMKTICHYCGHKATMNLRINNGVPVYEGEQVQIGG DESYYPVCRHHYFNPEK >gi|308169676|gb|AEHR01000027.1| GENE 101 97672 - 99024 1338 450 aa, chain + ## HITS:1 COG:SPy1035 KEGG:ns NR:ns ## COG: SPy1035 COG0769 # Protein_GI_number: 15675032 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 3 450 1 444 445 434 48.0 1e-121 MFIKTNLAKFLGKVSYLVLHNIFNGGTSFPGKLAVKIDHNILEELASDYEVILVTGTNGK TMTTSIITEALKEKYGDVLTNPSGSNMLQGIITAFLAHRKKHSQRKIAVLEVDEAYLKII TTYLKPKVVVLTNIFRDQMDRYGEIYTTYEKIITGIKNCPDATIVANGDASIFSSDDLTN QKIFYGFDLNNSDQKTDLLAPVNTDGVLCAKCHNILHYHEIVYANLGNYFCPKCNFHRPK LKYTVNEIVKQTPKSLTFKMGTKVYQMAIGGTYNIYNALAAYSVAKEFGLSDDEIARSFS KNKRIFGRQELINYSDKEIILILVKNPVGLDSVLNMLNTENDDYSLITLLNANHADGIDT SWIWDSNYESLHKENIKHILVGGLRHQDMHLRLKVAGFDPKIMETTPTDDELIDAIPNLP CKKIYILSTYTAMLSLRKKMAERKIINVNM >gi|308169676|gb|AEHR01000027.1| GENE 102 99027 - 100040 977 337 aa, chain - ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 2 334 6 314 328 193 38.0 4e-49 MEFLKTKKLIEMMVASKIVPGVNYLIFKNNDVWQNTVGLSQIIPQPVPLKADAIYDLASL TKVIGTTNVLLKLADEGKIAFNDTLKMYLPEFLDKRVKLSDLLTHTSGIKGWIANRDQLN ARELLQAIINLPVTEEFEHKVRYADTNFILLGLVLEKIYQQDLQDIIMHEVIKPAGLKAT SFAPDANKTVPTAMNQQGIMLCGVVHDPKARVLGKSCGSAGLFSNIADLYRLAQGYVGLR DDILPFGSATLSELYKIKTPAKLHARSWGWDLCFDPSDHHTLIYHTGFTGTFMLLDKVKK TGLIVLTNRIYPSGHNLIFLKMRQKIIESFLLENSII >gi|308169676|gb|AEHR01000027.1| GENE 103 100379 - 101608 839 409 aa, chain - ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 407 1 396 399 225 36.0 2e-58 MKKILIVAKETFFRQIKSWGFIFMVLGPFIIVGINIIIGLATAKSAHQKNDTDNRIAVVC KDNLLKTNLKANPDVKLYDNQATASKLFEKGKIKGYLYLTIKKNQQLDATVYLQPTDSSN IHKRSSVIISGLQNNINFATAKLSNEQKKKIMTVPEVHVKQAEKSKEIKNDTGIKIICFY AVCFILYFILLIYNGVTTQEIATEKGTKIMEVVFSSMPGGDYFIGKIMGLIGEVLLHIGI YLVGGYSIWRLLPYFKEGKTLVHQFDPFVGAILGNIGIYSLIYVVAALIICLILAALCGA LASKPENAGKTAQFMTILIILCFILATQFNNNVHSNLLFVLSYVPFISSFMMPIRIIYEV ASTWEILISISITVGFLIGILILIRRIYPRLILQTDDSVFKALKKAMMK >gi|308169676|gb|AEHR01000027.1| GENE 104 101605 - 102498 1020 297 aa, chain - ## HITS:1 COG:SP1717 KEGG:ns NR:ns ## COG: SP1717 COG4152 # Protein_GI_number: 15901551 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 294 1 294 297 346 57.0 4e-95 MLTIKQLNKSFGNKQVLYDVNFTAQDGHILGLIGKNGSGKTTIFHSILKFVEYSGDISID GHPFGAGDYNSVGYLPEERSLLPKFKIKQQIKFLARLKGMDDKEIDKLLADWMLRLEVKG KVDDKIKSLSKGNQQKVQMIATLIHNPQLIILDEPFSGLDPLNVEIMKREILNQKSKGAT VIFSDHNMSNVEELCDDVVMIDNGKVVLNGNTYDVRNKFGLTRIYVRTSMAIEDLAKIEG VEKAELLNDGRIKLYLTSAEYGYTIFDILSQGKYIQTFDQEPPTLNEIFKQKAGEGL >gi|308169676|gb|AEHR01000027.1| GENE 105 102590 - 103930 1664 446 aa, chain - ## HITS:1 COG:L0012 KEGG:ns NR:ns ## COG: L0012 COG0166 # Protein_GI_number: 15674150 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Lactococcus lactis # 5 446 4 448 448 575 63.0 1e-164 MTKVLSFDDSKLAPFVHDNELKEMQAMVNAADQELREGTGAGADFRGWIDLPVNYDKDEF ARIKKAAAKIQKDSEVLIGIGIGGSYLGAQAAIEFLNSAFYGKGKEKYPTVVFCGNSISG SYLYDLIEWLGDKDFSLNIISKSGTTTEPSIAFRVLKEKLVAKYGKEEAAKRIYATTDRQ KGALKTEADAEGYEEFVVPDDLGGRFSVLSAVGLLPIAVAGGDIDALMKGAADARSDYQT TDVLGDNPYKYAALRNILYRKGFTTELLENYEPTLRMFGEWWKQLFGESEGKDQKGIYPS SANFTTDLHSLGQYIQEGRRNLMETVVRVENPSHDITIPDDAENLDQLNFLSGKTMNYVN DRAYEGVVLAHTDGGVPVMTVNIADQSEHTLGYMIYFFELAVGISGYLNGINPFNQPGVE SYKRNMFGLLNKPGYEDLHDDLTKRL >gi|308169676|gb|AEHR01000027.1| GENE 106 104152 - 106332 1306 726 aa, chain + ## HITS:1 COG:SPy0807 KEGG:ns NR:ns ## COG: SPy0807 COG1368 # Protein_GI_number: 15674849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 8 726 24 735 736 544 43.0 1e-154 MINNKYNFRQSKVCFLTILTILFWLKYIFAFYFYFKLQLNDYYQQIIALISSLGSTIILF SIAFYITKPLLSYIFMILLDIANTTLLFSNIIYFRQFNDFLTFKTIQNTSKVTQGLGKST VALMQPLDILIWLDIIVIVCLLLLKIIKLDQRHYNINLSFAITSFGLFVALLNLALAETA RPKLLRNTFDRSYVVKYIGLSNYTLYDLTRSAQSGSSKKNINASQINKILAYTRKKYAGI NPKYFGKAKGKNVIILHLESFQQFLIDLKINNKEVTPFLNSIYHSKNTISYKNFFHQVGL GRTSDAETMLETGTFGIADGPLFSSLGNENTFQAAPQILRQRGYTSAVFHGNIGTFWNRN EVYKNLGYNYFFDSSYYFNEKKDKVGYGLKDKLLFAESIKYLEQLQQPFYVKFLTVTNHY PYNMDTEDLDKDFKTTNTNNTTINNYFQTAHYLDQSIREFFEYLKKSGLDKKSIVILYGD HYGVGSSDNETNALAPILNKADKPWSEYDTINLQRVPFMIHMNGLKGGIKSNIAGEIDVL PTLLHLLGIDTKNYIQFGNDLLSNKRQKFVIFRNGTIITPHYIIVGGRNNLNRIYDFNTG EKINNLTDKQKAHIEHLIKQAAKSLRYSDLLNNRNLLRFYTPKGFIPVDPLTFNYQLNYL NMIRIRKMVGNNSTSLYSENRGSTIDMYKTDAFQINKDKLFDLPANVIKTRKEAKNLLKE DAPLNK >gi|308169676|gb|AEHR01000027.1| GENE 107 106448 - 107161 496 237 aa, chain - ## HITS:1 COG:lin1542 KEGG:ns NR:ns ## COG: lin1542 COG0745 # Protein_GI_number: 16800610 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 232 1 226 228 182 39.0 4e-46 MNILLIEKEEAIIQILEAFFMKEKWNYDIATDGVIGTQMYSLNKNKYNLVLVDVELPSLD GVEVVKYIRNISLETPILVLAEKKFEEELISSLQQGADGYLARPFSPLLMVARIKALYRR INLERGKRVNLNIEQVICTKYLKIYPEKHKVIFNKQEINSLSPKEFAILTILASSPTQVF SRKKLLELVWGNEYFGDARTIDTHVKTLRQKLEKVGPHVIITVWGVGYKYDELNFDI >gi|308169676|gb|AEHR01000027.1| GENE 108 107163 - 107552 383 129 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1291 NR:ns ## KEGG: FI9785_1291 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 129 1 129 130 164 63.0 1e-39 MLYIACGIILFMIGLIWLISPAKKPNNLYGYVSYLAMVSEEGFKFAQKSAAKYFMLYGSI QFGLGLIIHLLKWDGCIVLWLLTFYLFIIFPFISTEKALQRFLKARDLLPYDYIEPDKVK HKLTKGFKD >gi|308169676|gb|AEHR01000027.1| GENE 109 107555 - 108532 820 325 aa, chain - ## HITS:1 COG:lin2215 KEGG:ns NR:ns ## COG: lin2215 COG1482 # Protein_GI_number: 16801280 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Listeria innocua # 2 318 3 316 318 304 47.0 2e-82 MEPIFLKPYFRSKIWGSRKFEKIFNDLPEGKIGEAWIISGYPNCSSTVIKGSYQGLNLRE LYQQKPDLFGQPHAAEFPLLVKLLDANDNLSVQVHPDDEYAKIHENDSGKTECWYILQAE PGAKLIYGHHAETKEQLAAWIKNGQWNKLLRYVPIKTGDFLYVPAGCVHALTKGIMVIET QQSSDVTYRLYDWDRIDNKTGQKRELHIQQSLDTIQVPHVDPYLERAVSKFPAATLVRLA NPPYSPHFYLWQLDVFGEFEWNMLNYQYLLVSVISGQGKLIFDGNDYNLSLGDSFIVPNK YNTFKFVGESLKIIISAPTNEEQDE >gi|308169676|gb|AEHR01000027.1| GENE 110 108560 - 109951 996 463 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309805664|ref|ZP_07699705.1| ## NR: gi|309805664|ref|ZP_07699705.1| hypothetical protein HMPREF9213_0583 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_1144 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9213_0583 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9215_1144 [Lactobacillus iners SPIN 2503V10-D] # 1 463 1 463 463 877 100.0 0 MVLSIADCKYFANRVNDFLTFPELEQLNSEQLWRLKNLVRNIKNISYDCFSTSVKAYALT GDAIYFEAFDKLLRKDQLLSPILNWSITNQTMPSFLLDRDGQIIINEGIKHDSWYVYDFK YDYHLKIPELKSVCNKLGLTSAELLSLVQKCSWQIVVKLLFLIQRLIVSKHYYMNYLNMA SIIKKAIVDDKIVWLVNILEFVYQRKLTLTCKFDEQWYIDNSVYPLEFCKENMLSGDLLT EDDYNMLVQEKIAIMFRNYEHMEVLSAFIHDYLEKYLTSQLTYEDARLDVNKVINGVNLK KNITALSKIAVKSIPLSLNKILEDVMNDTQSCDQDLLGFNIFADSDANPYYCNYTNGLRY FKLATKYQLVLKYMQKVFSDDNTIYRWLLWWRLQQWLRQNKVVAKGYITTFSYISKLPVE LTEWLEQGVVPQKITLTDNVYVIIPKRIQKRLQKYPLNLQDYE >gi|308169676|gb|AEHR01000027.1| GENE 111 110083 - 112050 1378 655 aa, chain - ## HITS:1 COG:SP0913 KEGG:ns NR:ns ## COG: SP0913 COG0577 # Protein_GI_number: 15900794 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 3 655 2 661 662 228 30.0 4e-59 MSFLMAKKFALKNLKANKVLEIPFVLSSGIMFILFNIMVSLASNSYVIHRHKFLISIINM GIVIVGILAVIFVLYSVSVLLKRKNKTLALYSILGLEKKHIRKIISIEFMYLFTMILAIA TVGGYIFGQLAFLGLNYLMRDMGVNVMHYPLSILAIVLTMVVVIILYIITVIRLSFTVYI STPTELLNKQHSGEGEPKSRYLVLLFGLITLSAGYWIALTTKGTLESITNFFTAVLLVIF ATYALYVALTVVALKLQKKHSSYFKPVKFLSVSGLLYRIKSNALSLASIAILGSGVIVTL SAVTMIYYSANMNFKNAIPRSYELISGENIDLHNYKKVSNTLKKQVEKTVDNKSQVVHSY VGYNCESWCEKKGDQLKILNNESLSSRTSKMLYVGDLVGYNANLHKKIKLQDDEILLCNN RIEKLNVHKLRIGGRTFKVRTVDNFVPANVAIESYGIIVKDLKTMLFFSKLFVKATGGMA TNAKISCSYNWDVKGISYKKYSKRVHVLSANKVEFVDAKEFLTRFYEINGGFLFIGIIIG IIFLVGTILIIYYKQVSAGYEDRHKFRIMKEIGLEDALIKKSNTSQLMLLLYSPLCVSII HCIVASKIVFNLVQMFGGIKWQNYNICLAAVISIFFIIYLLVFKITSRIYYNIVR >gi|308169676|gb|AEHR01000027.1| GENE 112 112050 - 112805 274 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 4 250 5 238 311 110 28 4e-23 MAILELKNIKRTYKTKCVVTEVLKGIDFSVEAGEFVAIMGESGAGKTTLLNVIATFDKPT SGSVILNGKEISTLKNSEISTFRRNKLGFVFQDFNLLDQFNNRDNIYLPLVLSNQKPQLM QERLDQIKDQLGISELLNKYPYEISGGQKQRVAIARAIITKPDLVLADEPTGSLDSTSSE IILNMFAKINQAGQTIMMVTHSLRAASFAKRILFIKDGIVYHEIYRSQAESQSEFMERIS QAQFMLKRGEQ >gi|308169676|gb|AEHR01000027.1| GENE 113 112905 - 113822 559 305 aa, chain - ## HITS:1 COG:SA2417 KEGG:ns NR:ns ## COG: SA2417 COG0642 # Protein_GI_number: 15928210 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 7 299 3 295 295 195 36.0 8e-50 MEKIKKFVKTEVKICVAVFIVLLIFFFVFLFANLDFSLFYLSLEIVTFCLLIYLFICWVT FKKKENLQEQVNQLLIENRQLKNTIDIERKDLEEYFLLWVHQIKTPITVSDLILQKEKTP YTCQLKEQMFYIREYTNMAINYMKLKDRQADMDIAEVEIDQLLKSLLRKYSGLFIDKNIS LDYQPIDTKIITDARWATILIEQILANALKYTNSGKITLSFDRDKNALKVKDTGIGIKSE DINKIFDRGYSGFNGRINEKSSGIGLYLVKKIAILLNIKIEVCSTVNVGSEFIICFPKQS YNFVR >gi|308169676|gb|AEHR01000027.1| GENE 114 113827 - 114495 670 222 aa, chain - ## HITS:1 COG:SA2418 KEGG:ns NR:ns ## COG: SA2418 COG0745 # Protein_GI_number: 15928211 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 219 1 219 221 200 47.0 2e-51 MKILIVEDEATLASLLEEELVQWGYLSKKASNFNDILAEVTDFKPDLVLMDVSLPFYNGF YWTEKIRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYD YKVGSDSIMYGDLKLNLSVAHLEGKNFVLELTRTELLILEILFNFKNKIAKREAIINYCW QGDAFIDDNTLAVNIARLRKKLKTVGYDELIQTKKGIGYYLK >gi|308169676|gb|AEHR01000027.1| GENE 115 114595 - 115887 1446 430 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 41 362 19 349 419 155 31.0 2e-37 MNFKKKLLLLATSALAMLTLSACSKNSSSTDGKVATNITKKTTVVFWHSMTGASEKCMKQ YAAEFEKKHPNIHIKLENQGNYADLQSKINATLQSPKNLPTITQAYPGWLYDAAKLNKLV NLKPYIENSQIGWGSVAKSDIKDKLLLGAQIGGKQYGIPFNKSSEVLFYNKDVFDKYNLK VPRNMSELAQCAKTIYKKSNHALVGAGVDELANYYILSMKEQGIDFDKNIDMTCPESKKA LNWYIKGLKEGYLQIASANGYLSTDFGHQKVAMFISTCASEAYVKMGMGKNKFNYGVAPR PSKYNVQQGTDIYMFNKGTAEQKSAAFMFIKFMLSKRNQLKLAHATGYMPVLNSILKSDD YKCSKDSKVAGILDKTTANIYNLKISKNENAAYFQLKSSMQAILSAAKKGDSVVPVIKAN QLKLAHCWKQ >gi|308169676|gb|AEHR01000027.1| GENE 116 116372 - 116929 118 185 aa, chain - ## HITS:1 COG:no KEGG:SPG_1053 NR:ns ## KEGG: SPG_1053 # Name: iga # Def: immunoglobulin A1 protease # Organism: S.pneumoniae_G54 # Pathway: not_defined # 2 129 427 574 1945 93 42.0 4e-18 AGVVTSKVDPLVQEVNPAGVVTSKVDPIVQKAKPEGVVTSKGEPLVQKAKPEGVVTSKGD PLVQKAKPAGVVTSKVDHLVQKAKPEGVVTSKVDPLVQKAKPAGVITSKVDPLVQKVNPA GVVTSKGDPLVELTKADHATELSHLTELLEKKYHLSSRNNLVNRYHQMYILMLKNCLNWE QIVEF Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:50:07 2011 Seq name: gi|308169644|gb|AEHR01000028.1| Lactobacillus iners SPIN 2503V10-D contig00046, whole genome shotgun sequence Length of sequence - 28651 bp Number of predicted genes - 32, with homology - 31 Number of transcription units - 15, operones - 10 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 - CDS 11 - 1201 1281 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 1228 - 1287 9.9 - Term 1284 - 1340 2.2 2 1 Op 2 6/0.000 - CDS 1364 - 1921 726 ## PROTEIN SUPPORTED gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) - Prom 1941 - 2000 2.4 3 1 Op 3 6/0.000 - CDS 2002 - 2685 606 ## COG1040 Predicted amidophosphoribosyltransferases 4 1 Op 4 . - CDS 2663 - 4081 1019 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) + Prom 3696 - 3755 6.3 5 2 Tu 1 . + CDS 3993 - 4415 379 ## COG1739 Uncharacterized conserved protein + Term 4544 - 4603 1.2 - Term 4640 - 4701 17.1 6 3 Op 1 . - CDS 4706 - 5842 1265 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 5866 - 5925 8.2 7 3 Op 2 4/0.000 - CDS 5937 - 7568 2069 ## COG1418 Predicted HD superfamily hydrolase 8 3 Op 3 1/0.750 - CDS 7652 - 8689 1197 ## COG0468 RecA/RadA recombinase - Prom 8711 - 8770 11.2 - Term 8732 - 8776 9.2 9 4 Op 1 5/0.000 - CDS 8812 - 9390 299 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 10 4 Op 2 . - CDS 9393 - 10469 1258 ## COG1426 Uncharacterized protein conserved in bacteria - Prom 10495 - 10554 7.8 11 5 Tu 1 . + CDS 10405 - 10566 85 ## 12 6 Op 1 14/0.000 - CDS 10578 - 11801 1100 ## COG0612 Predicted Zn-dependent peptidases 13 6 Op 2 . - CDS 11798 - 13027 1166 ## COG0612 Predicted Zn-dependent peptidases 14 6 Op 3 . - CDS 13017 - 15281 2095 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 15 6 Op 4 . - CDS 15297 - 15704 511 ## LGAS_1345 hypothetical protein 16 6 Op 5 . - CDS 15715 - 16227 607 ## COG0219 Predicted rRNA methylase (SpoU class) - Prom 16248 - 16307 2.4 - Term 16235 - 16265 1.1 17 7 Op 1 . - CDS 16328 - 17470 822 ## COG0628 Predicted permease 18 7 Op 2 . - CDS 17480 - 17860 517 ## LGAS_1348 glucitol/sorbitol PTS, EIIA - Prom 17927 - 17986 7.7 + Prom 17910 - 17969 8.3 19 8 Op 1 . + CDS 17996 - 19015 841 ## COG2706 3-carboxymuconate cyclase 20 8 Op 2 . + CDS 19024 - 19857 626 ## COG1968 Uncharacterized bacitracin resistance protein 21 9 Op 1 7/0.000 - CDS 19896 - 20819 247 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 22 9 Op 2 6/0.000 - CDS 20791 - 21597 830 ## COG0061 Predicted sugar kinase 23 9 Op 3 . - CDS 21597 - 22223 680 ## COG2357 Uncharacterized protein conserved in bacteria - Prom 22247 - 22306 6.1 + Prom 22081 - 22140 4.8 24 10 Op 1 . + CDS 22301 - 22915 579 ## COG4116 Uncharacterized protein conserved in bacteria 25 10 Op 2 . + CDS 22980 - 23597 466 ## FI9785_1382 hypothetical protein - Term 23421 - 23466 3.1 26 11 Tu 1 . - CDS 23590 - 24459 439 ## COG4469 Competence protein - Term 24480 - 24533 7.2 27 12 Op 1 . - CDS 24537 - 25277 875 ## LDBND_0516 negative regulator of genetic competence, sporulation and motility - Prom 25306 - 25365 11.4 28 12 Op 2 . - CDS 25368 - 25766 480 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 25806 - 25865 7.5 29 13 Op 1 . + CDS 25973 - 26467 306 ## LCRIS_00174 RNA polymerase sigma factor 30 13 Op 2 . + CDS 26529 - 26954 490 ## FI9785_1700 hypothetical protein + Term 26961 - 26995 1.1 - Term 26943 - 26989 4.1 31 14 Tu 1 . - CDS 26990 - 27850 669 ## LJ1019 hypothetical protein - Prom 27886 - 27945 5.8 - Term 27928 - 27961 4.0 32 15 Tu 1 . - CDS 27982 - 28650 782 ## FMG_0035 cell wall-associated serine proteinase Predicted protein(s) >gi|308169644|gb|AEHR01000028.1| GENE 1 11 - 1201 1281 396 aa, chain - ## HITS:1 COG:L0334 KEGG:ns NR:ns ## COG: L0334 COG0653 # Protein_GI_number: 15672097 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Lactococcus lactis # 1 396 1 397 865 530 68.0 1e-150 MTNILKKLYDNDKRDLKKFEKIANKVEKLADHFANMTDEQLQHMTVEFRDRLAKGESLDD ILPEAFATAREGAKRVLGLYPFHVQVIGGISLHYGNISEMMTGEGKTLTATMPVYLNALT GQGVHVVTVNEYLSARDESEMGQLYKWLGLTVGLNLNSMSSDEKREAYSCDVTYSTNSEL GFDYLRDNMVVYKEQMVQRPLNYAIIDEVDSILIDEARTPLIISGQAEQANNEYIRADRF VKTLVEDKSDDNMDDNEDHGDYKIDWPTKTISLTNQGISKACEHFGLNNLYDIDNQVLVH HLDQALRANYIMLNNIDYVVQNGEVLIVDSFTGRVMEGRRYSDGLHQAIEAKEGVKIQEE SKTQATITYQNFFRMYKKLSGMTGTAKTEEEEFREI >gi|308169644|gb|AEHR01000028.1| GENE 2 1364 - 1921 726 185 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 1 185 1 185 185 284 75 5e-76 MLKYNVRGENIEVTDALKSYVEKRLEKLEKYFEIESDVIAHVNLKVYSEKSSKVEVTIPL PYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTRINRKSRERGMRDFFYDTDVVSGATE EKAVSGFDIVRNKHLNLKPMDAEEAILQMNMLGHNFFIFEDADTNGTSIVYRRNDGRYGL IETNE >gi|308169644|gb|AEHR01000028.1| GENE 3 2002 - 2685 606 227 aa, chain - ## HITS:1 COG:L0319 KEGG:ns NR:ns ## COG: L0319 COG1040 # Protein_GI_number: 15673071 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Lactococcus lactis # 1 227 1 216 216 114 32.0 1e-25 MQLCLLCNQPFTDEVDLKTIFLPVSYVAKIICVNCYKKFKKITHPACINCNSYKNKLNQE QLCNDCLAWKVRYNGDLVFNRSIYQYNDAFHDLMVAYKRYGHYVLFNVLAELIKNQLPLA DRYIPIPSSPEHLQQRGYDTIISIYEPLCNLSPVLIKKAGGEAQGEKNKNERLATDNLFS LKANVKLSGQIVLLDDIYTTGRTIYHAWEIIKKAFPDCNVSSFTIAR >gi|308169644|gb|AEHR01000028.1| GENE 4 2663 - 4081 1019 472 aa, chain - ## HITS:1 COG:SP2208 KEGG:ns NR:ns ## COG: SP2208 COG4098 # Protein_GI_number: 15902015 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Streptococcus pneumoniae TIGR4 # 50 465 9 427 432 288 38.0 2e-77 MEQIKRLFLITSSCVPFSFIVKYFSGFSVKIDSFLRIKSRGVNIVNKLAGRQWINNQDND IINSKVKKVPAIIDNICQRCGQVVIYRLPTGHKYCHSCIGLGRVSENDFLCRMSRVGDAV KNENHLLTWKGDLTDRQAKVSADLLHALQNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGK YVALATPRLDVVNELYPRMCRAFANTKIGKYHGKMAQDPDNEPFIICTTHQLLKYYQAFD LIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDMLTEVKNGEMGYSLLQQR FHGGLLAVPEEYLFWRKYISGESLHPFLIKVLNEIINSGKPLLVFVPRIAELGLYQTILQ KKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERGVTFPGVQVIVIEADDAIY TTAGLVQIAGRVGRAATDQVGRVIFCYHHYTKALKEAKKQILEMNHATMSFM >gi|308169644|gb|AEHR01000028.1| GENE 5 3993 - 4415 379 140 aa, chain + ## HITS:1 COG:lin2660 KEGG:ns NR:ns ## COG: lin2660 COG1739 # Protein_GI_number: 16801721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 6 137 3 134 211 146 53.0 1e-35 MTEKPEKYLTIKENGTHELVIKKSRFICSMARTNTVEEAEIFVKKITNLYKDATHNTYAY TIGFDNTCVKACDNGEPSGTAGIPELKALQLMNLNNITAVVTRYFGGIKLGAGGLIRAYS NSVTQAAENIGVIKCILQKK >gi|308169644|gb|AEHR01000028.1| GENE 6 4706 - 5842 1265 378 aa, chain - ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 2 359 12 395 443 320 46.0 2e-87 MFQIIIKIFSLVIISVLITPFIRKLAFVLGAVDNPNARRVNKKPMPTIGGLGIFVSFNIG EFVLLRSQFPTHELFSILLASSVILLTGLIDDILELKPKQKMLGIFIAALIIYFLAGIRV NEISLPFMSPINLSWWSLPITVFWILALTNAVNLIDGLDGLATGVSMISLSTMGIVGFFF LHGWQNYVPLMCIMLATCLLGFLPYNFHPAKIFLGDTGALYIGFMISILSLKGLKNVTFI SLLVPIIILGVPLTDTIFAMIRRKLNKKPITVADKHHLHHQLMRMGLSHRQTVLAIYGIS LLFSFISLVFISSPAWGIWPLMIGLLFALELFVETIGLLGDKFKPLLHFIQNYINKMHRS DPQVGISHFSIKKDEHKD >gi|308169644|gb|AEHR01000028.1| GENE 7 5937 - 7568 2069 543 aa, chain - ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 62 543 39 520 520 474 59.0 1e-133 MQNNYLSFVAIVIFSILISGVAGYCYRKHKWEQAAENAKNDAKHIIENARLDIQSAREKL LTEKQALQEMKKHVADLKKEKILEAQEEIHRYREKVENELNQRRKEVSRQENRLLQREDA IDRKDGMLDQKDCQLTQRENQVKELQAELSEKHQLADTLIHQREEKLYEVSRLSVEDAKK IILSELSDKLVAERAALVKESNEQAQAKAEHYATKLIVEAIQSSAADTVSENTVSVVNLP NDDMKGRIIGREGRNIRSFEAMTGIDLIIDDTPDVVVLSGFDPIRREIAKRALENLIKDG RIHPARIEETVDRARKEVNDDIYEAGEGALMELGIHKMHPELVKILGRLKYRTSYGQNVL SHSIEVGKLTGVMASELGLDEKIAVRAGLLHDIGKSIDHEIEGSHVEIGVELARKYHESE IVINAIAAHHGDVPKMSFIAELVVAADTISSARPGARSESLENYIRRLEQLEKISKGYPG VKQAYAIQAGREIRIMVEPDKVSDDQIVLLARDIKNQIENEMEYPGNIRVTVIREKRAVD IAR >gi|308169644|gb|AEHR01000028.1| GENE 8 7652 - 8689 1197 345 aa, chain - ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 4 340 2 340 348 477 73.0 1e-134 MAKDEKKAALELALKKIEKNFGKGAVMRMGEKVDTKISTISTGSIALDTALGVGGYPRGR IIEVYGPESSGKTTVALHAVAEVQKNGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPN TGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG NISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRKSEQIKQGSDPIGS RVKIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMAVDKDIVNKSGAWYSYGDDRIGQ GRENAKQYLEEHPDIFREINDKVRQAYGIDNKESDEDSSEDTEQE >gi|308169644|gb|AEHR01000028.1| GENE 9 8812 - 9390 299 192 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 180 484 661 904 119 39 2e-26 MNLPNKLTTLRIFMIPVFILLLIFQWPAGFLLLGSTKIFWCNLVAAIVFALASFTDYLDG HIARKRGLVTNFGKFADPLADKMLTMTAFVFLITLNNSQHTYAPAWVVAIIVCRELAVTG LRLLLAENKGQVLAAKMPGKIKTTTQMLAIIFLLLSDIYYIGTILLYICLVFTIYSGYDY FKNSWHIFKGSM >gi|308169644|gb|AEHR01000028.1| GENE 10 9393 - 10469 1258 358 aa, chain - ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 187 1 191 311 103 36.0 4e-22 MSDIGDKLKNARKANGMTIEDIEKITKIQRRYLYAIEENQFDQLPGDFYVRAFIKQYAQV VGLNGKELLDEYHKEVPEATPEKYVENSIDNKSQEVRKTTNNKKGLWKQYIPIAAAIIAF FVTVCLIYLIYAHFISNTNQKSINQVDNVTVKSSNEESQKKKKQRVKHKKKATSDIKLEK LSDTLYKVKKMGNKRTLVVKTGSTAVFARIFIDGRSVWHGVLNADDAHQVKIPHNVGNVT VFFANTSSAELIIGGKKLNITNKTMPNAARTITFLFAHKNAVKTNEKNLVNNKENETKQA EQNKTNNQTDTENENINKQENKNTTPQNKQPVQHSQQNETNKQNQQRDQGQAAGGNSR >gi|308169644|gb|AEHR01000028.1| GENE 11 10405 - 10566 85 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSSIVIPFAFLAFFNLSPMSDILTLIPLSFTEKYTKTYSKQTRFTTNISVLPI >gi|308169644|gb|AEHR01000028.1| GENE 12 10578 - 11801 1100 407 aa, chain - ## HITS:1 COG:BS_ymfH KEGG:ns NR:ns ## COG: BS_ymfH COG0612 # Protein_GI_number: 16078749 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus subtilis # 13 402 8 409 415 123 25.0 7e-28 MMEENLISKTYDSGFVANIILKPGFASKFMGIVVDFGGSDPQEISGGAHFLEHKLFAKKY GDIALKFERLGADCNAYTGFNETMYYAEFANHWPKILPLLFELVGEPYFTVDNIDQERKI ICQELATAKDDPEWYLIHNLMSNMFPQTMFTHDIVGSEEDLAKIDISFLNKIYKKYYCSN NMRFIACGDFSPSQVQKIFTLVNKMQKKYINCAPKPKIAVQTIDSMATDEQITNNKSKNI HVGVAIKLPDLNKFTSNALLATDVLEMLIDAHFNSNNIWLSNMQLQNIINDQPDVDIYNT REGSFVIITALSRYPQKLVSAIKHELFRGHMSAELIELNKKEFLANYLRLTDDLNSYAQQ MAGTLLHGRSLAQIIEEVVQMNNSDMVSLYQDILAKSSIYSCIMSNR >gi|308169644|gb|AEHR01000028.1| GENE 13 11798 - 13027 1166 409 aa, chain - ## HITS:1 COG:SA1121 KEGG:ns NR:ns ## COG: SA1121 COG0612 # Protein_GI_number: 15926861 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Staphylococcus aureus N315 # 8 408 10 415 421 63 20.0 7e-10 MRSKDLGNVVIEQNNKFKTGCIGCFFRLDLTPKNITISTLLAEVQSLLSEKYNTINRQSK RLSSLYDASLQIFPEINGNSIVMSYMLNFIEPREILDPEYDYAKIMETFFSIVHRPLIDE KVVNLAKSTLHSNIRDFFELPENRALHQFMKLWFKNQPNYQYVNVVKRDILDQLSLEDIQ DFVKILFKSPLMIYGQVADTNLFNKIGHSYFNIFKSKADFVNPQLVVDRDIDTFDESSDA QYEQAQVLMGYFYNHIQSMPRPWIGPLIMSYYLANTESSILFKKVREQLGATYGVDAFND ENHSLLLIRTGVNKNQVKQVKEIIQGCLSDLVCGLVDQEAFDHSKQLLINNFNSYGDIQE SMMIKAVTENLIGSFSTIPNMIKLIKDYTVNDLINLAKTMQLNGSYCLL >gi|308169644|gb|AEHR01000028.1| GENE 14 13017 - 15281 2095 754 aa, chain - ## HITS:1 COG:BS_spoIIIE KEGG:ns NR:ns ## COG: BS_spoIIIE COG1674 # Protein_GI_number: 16078743 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 16 754 18 784 787 597 46.0 1e-170 MPRKNTSISKVKKEKLEWVITGLILAVLVLFSCADFGLLGNQATNLVRLFFGDAHYLASA IIGVCALVMIIYNQPPHLGKKRTWGLIIFTIALTALCSSLLFQKLMLKHDYMSVFLTRIG QEFLHGRDSMSVGGGLIGTLFCQIFNYLFGSYGSKFIEGLLIVAGLLMFFDVKFRTIVQK FQTLSKFFIAKNKDAGILLKDKYSDLIENYHDQHKEKQDFPNIGDLDAPKNEQLPEPAPV DVVVDRANDLNNDNEMPELVHDLVKKDDKNSLGRLDYVYPSLDLLDAVTNTDQSSDSKLI KQNTLTLENTFSSFGVSVIVKKAVLGPTVTRYEVQPAVGVKVSRIVNLTDDLALALAAKD IRIEAPIPGKPFIGIEVPNKVASTVSFREVMQKQENKAKQEVLSVPLGKNVTGQIVSADL RKMPHLLIAGATGSGKSVAINTIITGILMKAHPDDVKLILIDPKMVELSVYSGIPHLLIP VVTDAKLATSALRKAVREMERRYQLFAAGGVRNIGEYNEKVTLNNQNKANSVMELLPYIV VIVDELSDLMMVAGREVEDSIVRLAQMARAAGIHMILATQRPSVDVITGLIKANVPSRIS FAVSSGIDSRTILDQVGAEKLLGRGDMLYLPIGASKPERIQGAYINVDEVERVVDWVKKQ QATEYDQKMIPSDSEDSDNDNSEQDDTDDEFYQQAVDLVRQQQTASVSLLQRRFRIGYNR AARIVDAMEKNGIVGPSTGAKPREVLLPPLKDEE >gi|308169644|gb|AEHR01000028.1| GENE 15 15297 - 15704 511 135 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1345 NR:ns ## KEGG: LGAS_1345 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 135 1 135 144 181 65.0 1e-44 MKFKKMTPVTTEHFHFDVNEEEKVKNEVNVSLRQVYHQPEGQEADEGKDGKYFQLAVIFD VAPAPGEFSVSGLITQIVQFVDYFGDGTDLNPADYQLVSRPLVEEIETLIYQLTQVIFDE PLNITFKSNFDQLKR >gi|308169644|gb|AEHR01000028.1| GENE 16 15715 - 16227 607 170 aa, chain - ## HITS:1 COG:L161988 KEGG:ns NR:ns ## COG: L161988 COG0219 # Protein_GI_number: 15673131 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Lactococcus lactis # 3 169 2 169 169 195 54.0 3e-50 MTNHVVLYEPLMPANTGNIARTCAGTDTVLDLIEPLGFSLDDKHMKRAGLDYWDKVKINK HDSLEDFLATLQANDEMYLISKFSSKSYTDIEYTDPTKNYYFVFGKETTGLPKTFMREYY ERNLRIPMSDHIRAFNLANSVAIVLFEALRQQGFPHLEKSHHYPKDKLKD >gi|308169644|gb|AEHR01000028.1| GENE 17 16328 - 17470 822 380 aa, chain - ## HITS:1 COG:SPy1011 KEGG:ns NR:ns ## COG: SPy1011 COG0628 # Protein_GI_number: 15675014 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pyogenes M1 GAS # 1 379 1 378 393 231 34.0 2e-60 MELKNKKDNEKSIFNSWIVNNRFSIFVLNTLLLFLTIFIFNKIAFLLTPMLTFVNAIMPA VILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFMVVLIILILIVNTLLPVIEAQTKSLI DHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILFNTGKASFNLFLENLFGAV NVISMLIVTLLTAPFILFFMLKDGKKINPYLTSFMPPRLQNVFSKLLHDINIAVSSYVRG QLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIPYFGTLISLIPAIIIGILDSPVM LLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILLLIGANSVAGLLGVIFAIPIYAG IKIIVVQVFDYYRKNSSLYK >gi|308169644|gb|AEHR01000028.1| GENE 18 17480 - 17860 517 126 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1348 NR:ns ## KEGG: LGAS_1348 # Name: not_defined # Def: glucitol/sorbitol PTS, EIIA # Organism: L.gasseri # Pathway: Fructose and mannose metabolism [PATH:lga00051]; Phosphotransferase system (PTS) [PATH:lga02060] # 1 126 4 129 129 156 60.0 3e-37 MKWMATIQKIGVEAISNNENMVILFNETANEKLSRVAVIQKFDKETPVSSFICKKDDTVT IDGETYLVLHVGRMVADNMHAIGHCVLFFVDKLPEKTLHNAIYLQKDDEEPMPQFKQGDW ISYEHR >gi|308169644|gb|AEHR01000028.1| GENE 19 17996 - 19015 841 339 aa, chain + ## HITS:1 COG:L11851 KEGG:ns NR:ns ## COG: L11851 COG2706 # Protein_GI_number: 15674136 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Lactococcus lactis # 2 338 4 341 341 259 39.0 6e-69 MKVLFGGYTDHASQGLYEAFLDQQNPNPSITNLKNIIQLQRPTYFQTDGSLLFTISQNDN QAGIASYRLIGQNYVQIDSFYHPGAAPCYLALSKNKKLIYTANYHLGTLSIFQYDEQGHL QFISSCQHTGQGKLKEQDAAHPHFFNQTPQGNLVSCDLGLDRLDFYTFDGNQLKHVANYQ MEAGFGTRHVRFSVDGHYMYVVGELSSKVNVIQIDETNWNFAEIDSVKTIPESYSEHNGA AAIRISNDDKFLYVTNRGHDSIAIYRILANHHLDLIQRIPVYGAFPRDFNFNSQQNLLVV ANQNSNNATLYKRNQKLGTLVPIQKDFYVPEPTRVIILD >gi|308169644|gb|AEHR01000028.1| GENE 20 19024 - 19857 626 277 aa, chain + ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 3 273 1 278 284 265 52.0 5e-71 MLIDIVKAIILGIIEGITEFLPISSTGHLYLADYLVKLNQPSSFINMFMVVIQLGAILSV ILIYFDKLNPFSKNKNKQKRKETWNLWFKVVVAVIPAAVIGLPLNDWLEAHMSTWPVIAS TLIVYGILFILLENYCQHNQANITKLGSLSYQMAILIGCFQVLSLIPGTSRSGATILGAL LLGASRYVSTEFSFFLAIPTMFGASLLKLVKFFAKGHSFHGDQLIILLVGMLVSFLVAYA SIKLLLKFIKNHNFKSFGWYRIALGIIVILAGLSHLI >gi|308169644|gb|AEHR01000028.1| GENE 21 19896 - 20819 247 307 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 50 294 40 280 285 99 32 2e-20 MPSLDMSMTKNADFYKLVYREKRPQKVADFLLTKGFSKRSLINCRHRGGNVLVNHRRRYN NYLLHDGDEVIFILGKEKPNATLKFSNLPIAIVQETANYLIVNKEADLLTIPSKNEDNDS VVGRLLHYLNPDALIKIKPHIITRLDRDTSGLVLVGKNAVAHARFNVSDKQRTIKKYHAI VHGNFSPSQLQGVIDAPIGKKDDPIKRYIMEGGKNSVTKYRVIKQVAGASLVELQLLTGR THQIRVHMQYLGHPLFGDHLYGVEDDFPRQALHCFLLAFDDPLEHKRIEVQIADPADMLQ LWQKLSK >gi|308169644|gb|AEHR01000028.1| GENE 22 20791 - 21597 830 268 aa, chain - ## HITS:1 COG:SP1098 KEGG:ns NR:ns ## COG: SP1098 COG0061 # Protein_GI_number: 15900966 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 264 7 268 272 265 51.0 5e-71 MKVAIVGNEQVKTQAVVKSLKRLLSQKQIDIDVENPDVVLTVGGDGTLISAFHKYENLLD QVRFIGIHTGHLGFYTDWRNFEIDKLVENLADKQPSTASYPLLELLITDKDHHKEKLLAI NEATIKRLSKTLKADVYIRDQFFESFKGDGLCVSTPTGSTAYSKSLGGAVIHPRLKALQM TEIASINNRVFRTLSSPIVISPDEWITIKPEINDDDPCVITVDGNKYNHSHIEKIEYRIS QHVIRFDKFQHTHFWNRVEDAFIGHEHD >gi|308169644|gb|AEHR01000028.1| GENE 23 21597 - 22223 680 208 aa, chain - ## HITS:1 COG:SP1097 KEGG:ns NR:ns ## COG: SP1097 COG2357 # Protein_GI_number: 15900965 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 3 200 4 201 223 241 60.0 7e-64 MQDWDLFLWPYREAVSELKIKLRALRESYLIKGEHSPIEFVVGRVKTVDSIKEKMERRVI PSDVIETDMQDIAGIRIMCQFVDDIYQVVELLHNRHDMHVIEERDYIQNAKPSGYRSYHM VIEYTIFLPDGPKNVIAEIQIRTLAMNFWATVEHTLNYKYQGKYPDDVSKRLKSAAEAAY QLDEEMSSIKDEVREAQRIFTQTKGKEQ >gi|308169644|gb|AEHR01000028.1| GENE 24 22301 - 22915 579 204 aa, chain + ## HITS:1 COG:L164461 KEGG:ns NR:ns ## COG: L164461 COG4116 # Protein_GI_number: 15672342 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 167 1 159 197 59 33.0 4e-09 MSKNIEIESKILLSQKLYQQIITSFTKKAKFEQSNYYFDNQQQTLKKDAISLRIRLYHDH AEQTLKVNPSHKKQNNFQEVIEINDDLNLAEAKYLVNQAQQIMTTGQIANYLQQNYNATL ISTLKPQTWSQTNRTLLDGPYHCELTLDKTCYPDGYSDYEMEIENPDPATIQKVLDQLKE QFNLTYDDDQINQSKIKRAYLHKK >gi|308169644|gb|AEHR01000028.1| GENE 25 22980 - 23597 466 205 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1382 NR:ns ## KEGG: FI9785_1382 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 172 1 175 201 144 41.0 3e-33 MFELFFFVNPIGGTCHECEKIAFHTMQQYNKKYNYHLIPMASMPSIIDALKNNKGNYDLN LFNQFSGDTFNAIKDFHSIKLLKGNKLAKQFVLNLQEMVNIQKCKYSEELVLQLINNFDL SAKTFKEMRQSEYVNMSIDEDLKLINTFNIKVTPTIIIYNYAKDEAGYLFEGKLEINCLK KMFQKPQPQQNKKIALSLHVLKNIT >gi|308169644|gb|AEHR01000028.1| GENE 26 23590 - 24459 439 289 aa, chain - ## HITS:1 COG:SPy1395 KEGG:ns NR:ns ## COG: SPy1395 COG4469 # Protein_GI_number: 15675318 # Func_class: R General function prediction only # Function: Competence protein # Organism: Streptococcus pyogenes M1 GAS # 9 201 3 200 320 73 31.0 4e-13 MYAALVNEKLVTAYEEYSLLPNYQQLNTKIYRCPRCKKRVILIVSQSKAPFFKHYNVSQG KGEKEEHALSKQMLCTALVGAGYQAKMEVNLAYRQLRADILMQNSISFEIQCSPISDIEF DHRHNLYEKIGIKDVWVVGRRHFLHQQLRESQKKFLRFNQQWGWYYLEINPYEADISLKY NILLSPISRKLKYQIKKFSLDDLGIRKFFNFVPYLKRYSLPDVQFQRQYLHKKIQQKTGY GLQVAQLLYENRKSVEDIPVEILTQYYLPKQNCPLVQYLQKISEDTETK >gi|308169644|gb|AEHR01000028.1| GENE 27 24537 - 25277 875 246 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0516 NR:ns ## KEGG: LDBND_0516 # Name: not_defined # Def: negative regulator of genetic competence, sporulation and motility # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 246 1 247 249 108 30.0 1e-22 MKINRINENVIRVEISNEEIAEHGLSVLDFIKRTDKVRDFLMGIAKEVYGKNDDNDEEKH EEDLVSFEVMPSSEGLAIRIVRSPLNRDLDEDNSADDESSFVEDDDDEEESEADSHSGCY YRKYHPEEFEDENDEDDEEDEDDSTGMLEDFHRIYSFADFDDLVAFMDVVHVADLASSLY FFEGKYYLQMEFIDDLTLSEPQQIWALANEFGTRFVNDKFAMVKHYGICIYRRDAISQFK ENFFAK >gi|308169644|gb|AEHR01000028.1| GENE 28 25368 - 25766 480 132 aa, chain - ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 131 1 131 131 155 60.0 1e-38 MIKLYISPSCTSCRKAKAWLTKHNLAFDERNILIQPLTKKEILNILRLTEDGTEEIISTR SKIFKKLNVNLDQLSIDQLLDLVVKHPSLLKRPIIMDNRRLQVGYNVEDIRRFLPRSVRK MELIRANAIISL >gi|308169644|gb|AEHR01000028.1| GENE 29 25973 - 26467 306 164 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00174 NR:ns ## KEGG: LCRIS_00174 # Name: not_defined # Def: RNA polymerase sigma factor # Organism: L.crispatus # Pathway: not_defined # 1 163 1 162 163 100 38.0 2e-20 MIKSQNFIKAWNNKKLVAGVLKTIGVQRQYHNYEDLLNEGIILYAECLEALDTVQLAAKD KDKIAFTKIKWRIIDQLRKHKKYNEQQNIADYPQISFIIPQHDNFLLLQDEIKSMSPTER LIFSQHWINNKTITEISQQYNLSRSTLQRNKAALRLRLREKLQD >gi|308169644|gb|AEHR01000028.1| GENE 30 26529 - 26954 490 141 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1700 NR:ns ## KEGG: FI9785_1700 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: Metabolic pathways [PATH:ljf01100]; Biosynthesis of secondary metabolites [PATH:ljf01110] # 11 136 2 136 139 105 42.0 7e-22 MQNYEEIIFNNLEKRKVIINQEKTDQEIIAQAKKCDTLSQMMEWRIDYYEHATEIDRLLA LSQQIHQQAPQLQILTTFRSQKLGGKTELCSEDAYLNLVELLINFNFGTAIDIELDHTPD RVNDLIKKATNKHLLIREYHN >gi|308169644|gb|AEHR01000028.1| GENE 31 26990 - 27850 669 286 aa, chain - ## HITS:1 COG:no KEGG:LJ1019 NR:ns ## KEGG: LJ1019 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 10 282 12 279 283 120 28.0 6e-26 MKKRQLKTKLPYKEKTYQWSKEIIREKLHYASGSELLQYVVHMDNYAVSAMMMAMYDFDK DPLEGKYKAVIFDQNHGIVLSTRNTRQIIGDFLNNEIFEYQLGLAVQKKIARSMNLNRYH ALSFNKLAFFSLKGFTNGKTSWLNLSALTEFSLHRRNASFTSVEVNGSRHIFCFDKVVAN LDKVLSEAITHNLVVKRGLLAYESKLMGRPVVSGREKKSLLNDSQYFAYEIMPKCDANYL VSMSKGIWHDIFLLFGKRLFKLLEINWNYEDYKEAYKHNNRINYLR >gi|308169644|gb|AEHR01000028.1| GENE 32 27982 - 28650 782 222 aa, chain - ## HITS:1 COG:no KEGG:FMG_0035 NR:ns ## KEGG: FMG_0035 # Name: not_defined # Def: cell wall-associated serine proteinase # Organism: F.magna # Pathway: not_defined # 1 55 1609 1663 1960 62 49.0 1e-08 DNPTDPKKDNPTDPKKDNPTDPKKDNPTDPKKDNPTDPKKDTPAGPKKDTPVVSGETGIG YLDLDTLFDSVTGPLKDSSFTGTLYVPVVGKDVNCKVRLLDDAGKYTNDYVVTDTTIKAL ASKVVNGVTFYKVAENRWIPAKFAETTVANVAEVAFKGVAKTFVKGHANYAVAMLDANGK YTGKFLKQGSSFKVFAKKVINGHLCYRLGTQAQWVPARFLVF Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:51:13 2011 Seq name: gi|308169535|gb|AEHR01000029.1| Lactobacillus iners SPIN 2503V10-D contig00026, whole genome shotgun sequence Length of sequence - 104128 bp Number of predicted genes - 108, with homology - 108 Number of transcription units - 43, operones - 23 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 868 - 2427 1536 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 3 1 Op 3 40/0.000 - CDS 2462 - 3643 872 ## COG0642 Signal transduction histidine kinase 4 1 Op 4 . - CDS 3633 - 4370 853 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 5 1 Op 5 9/0.000 - CDS 4354 - 5400 702 ## PROTEIN SUPPORTED gi|229879751|ref|ZP_04499249.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 6 1 Op 6 20/0.000 - CDS 5420 - 5947 269 ## PROTEIN SUPPORTED gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase 7 1 Op 7 . - CDS 5931 - 6668 439 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 8 1 Op 8 . - CDS 6682 - 7335 574 ## COG3884 Acyl-ACP thioesterase 9 1 Op 9 2/0.300 - CDS 7411 - 8265 760 ## COG0313 Predicted methyltransferases 10 1 Op 10 . - CDS 8268 - 8570 362 ## COG4467 Uncharacterized protein conserved in bacteria 11 1 Op 11 . - CDS 8637 - 9494 945 ## COG2812 DNA polymerase III, gamma/tau subunits 12 1 Op 12 . - CDS 9511 - 10200 682 ## COG0125 Thymidylate kinase 13 1 Op 13 . - CDS 10212 - 10445 122 ## gi|259501362|ref|ZP_05744264.1| conserved hypothetical protein 14 1 Op 14 23/0.000 - CDS 10442 - 11041 549 ## COG0353 Recombinational DNA repair protein (RecF pathway) 15 1 Op 15 30/0.000 - CDS 11041 - 11370 612 ## COG0718 Uncharacterized protein conserved in bacteria 16 1 Op 16 2/0.300 - CDS 11416 - 13167 2024 ## COG2812 DNA polymerase III, gamma/tau subunits - Prom 13193 - 13252 8.6 - Term 13179 - 13217 7.2 17 2 Op 1 . - CDS 13348 - 13794 535 ## COG0590 Cytosine/adenosine deaminases 18 2 Op 2 . - CDS 13843 - 14457 667 ## COG2813 16S RNA G1207 methylase RsmC 19 2 Op 3 . - CDS 14503 - 15132 496 ## FI9785_1632 hypothetical protein - Prom 15263 - 15322 4.4 - Term 15273 - 15326 7.0 20 3 Tu 1 . - CDS 15358 - 15615 84 ## LJ0590 hypothetical protein - Prom 15644 - 15703 10.1 - Term 15714 - 15750 4.0 21 4 Op 1 12/0.000 - CDS 15915 - 16367 622 ## COG3610 Uncharacterized conserved protein 22 4 Op 2 . - CDS 16369 - 17178 1020 ## COG2966 Uncharacterized conserved protein 23 4 Op 3 . - CDS 17144 - 17533 255 ## FI9785_1641 hypothetical protein - Prom 17691 - 17750 6.8 + Prom 17545 - 17604 11.4 24 5 Tu 1 . + CDS 17703 - 18302 717 ## LGG_02225 hypothetical protein + Term 18308 - 18341 4.0 - Term 18296 - 18329 4.0 25 6 Tu 1 . - CDS 18334 - 19437 1114 ## COG1316 Transcriptional regulator - Prom 19523 - 19582 8.6 + Prom 19271 - 19330 7.9 26 7 Tu 1 . + CDS 19578 - 21377 2060 ## COG1164 Oligoendopeptidase F + Term 21387 - 21430 6.3 + Prom 21379 - 21438 6.7 27 8 Op 1 10/0.000 + CDS 21510 - 22505 1049 ## COG2376 Dihydroxyacetone kinase 28 8 Op 2 9/0.000 + CDS 22518 - 23102 551 ## COG2376 Dihydroxyacetone kinase 29 8 Op 3 . + CDS 23099 - 23467 425 ## COG3412 Uncharacterized protein conserved in bacteria + Term 23484 - 23531 13.1 - Term 23575 - 23615 2.1 30 9 Tu 1 . - CDS 23647 - 24519 994 ## COG2017 Galactose mutarotase and related enzymes - Prom 24602 - 24661 5.6 - Term 24533 - 24586 3.1 31 10 Op 1 . - CDS 24704 - 25381 740 ## FI9785_565 hypothetical protein 32 10 Op 2 4/0.100 - CDS 25394 - 25969 863 ## COG0698 Ribose 5-phosphate isomerase RpiB 33 10 Op 3 2/0.300 - CDS 25987 - 26415 605 ## COG0698 Ribose 5-phosphate isomerase RpiB 34 10 Op 4 . - CDS 26425 - 26976 564 ## COG1349 Transcriptional regulators of sugar metabolism 35 10 Op 5 . - CDS 26918 - 27184 231 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 27225 - 27284 5.9 36 11 Tu 1 . - CDS 27301 - 28239 1056 ## COG3684 Tagatose-1,6-bisphosphate aldolase - Prom 28282 - 28341 4.7 37 12 Op 1 . - CDS 28343 - 28561 236 ## gi|309803498|ref|ZP_07697591.1| conserved hypothetical protein 38 12 Op 2 10/0.000 - CDS 28640 - 30052 1660 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 39 12 Op 3 13/0.000 - CDS 30088 - 30402 481 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 40 12 Op 4 . - CDS 30433 - 30921 625 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Prom 31057 - 31116 11.2 41 13 Tu 1 . - CDS 31123 - 33141 1632 ## FI9785_78 hypothetical protein - Term 33151 - 33188 4.0 42 14 Op 1 4/0.100 - CDS 33206 - 33604 517 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 43 14 Op 2 13/0.000 - CDS 33623 - 34441 984 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 44 14 Op 3 13/0.000 - CDS 34428 - 35333 1186 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 45 14 Op 4 . - CDS 35345 - 35836 700 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 46 14 Op 5 9/0.000 - CDS 35915 - 37087 1450 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 47 14 Op 6 7/0.000 - CDS 37099 - 38268 1116 ## COG2222 Predicted phosphosugar isomerases 48 14 Op 7 . - CDS 38290 - 39000 742 ## COG2188 Transcriptional regulators - Prom 39203 - 39262 7.3 + Prom 39473 - 39532 4.5 49 15 Op 1 4/0.100 + CDS 39664 - 42858 2279 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 50 15 Op 2 4/0.100 + CDS 42845 - 43033 175 ## COG0286 Type I restriction-modification system methyltransferase subunit 51 16 Op 1 27/0.000 + CDS 43216 - 44496 1106 ## COG0286 Type I restriction-modification system methyltransferase subunit 52 16 Op 2 . + CDS 44489 - 45739 526 ## COG0732 Restriction endonuclease S subunits 53 17 Tu 1 . - CDS 45736 - 46158 127 ## COG0732 Restriction endonuclease S subunits - Prom 46194 - 46253 1.8 54 18 Tu 1 . - CDS 46290 - 47270 465 ## COG0582 Integrase - Prom 47319 - 47378 2.1 55 19 Tu 1 . - CDS 47380 - 48072 339 ## COG0732 Restriction endonuclease S subunits - Prom 48093 - 48152 6.8 - Term 48280 - 48319 3.5 56 20 Tu 1 . - CDS 48340 - 49899 1758 ## HMPREF0421_20066 perfringolysin O - Prom 49941 - 50000 7.2 + Prom 49855 - 49914 8.8 57 21 Tu 1 . + CDS 50101 - 50577 650 ## FI9785_192 hypothetical protein + Term 50599 - 50639 1.4 - Term 50644 - 50700 11.1 58 22 Op 1 25/0.000 - CDS 50706 - 52442 1986 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 59 22 Op 2 . - CDS 52442 - 52708 455 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 52761 - 52820 5.5 60 23 Tu 1 . - CDS 52836 - 53009 324 ## FI9785_1388 hypothetical protein - Prom 53101 - 53160 7.3 61 24 Op 1 . + CDS 53139 - 55280 1587 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 62 24 Op 2 . + CDS 55335 - 55613 350 ## LJ0814 hypothetical protein + Term 55639 - 55684 8.2 - Term 55709 - 55760 7.5 63 25 Tu 1 . - CDS 55796 - 56677 1100 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs - Prom 56708 - 56767 11.9 - Term 56714 - 56782 4.4 64 26 Op 1 . - CDS 56827 - 57357 392 ## MPTP_1837 putative ABC transporter membrane-spanning subunit 65 26 Op 2 . - CDS 57237 - 57635 119 ## MPTP_1837 putative ABC transporter membrane-spanning subunit 66 26 Op 3 . - CDS 57628 - 58539 331 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 58572 - 58631 5.6 - Term 58764 - 58800 3.0 67 27 Tu 1 . - CDS 58817 - 64006 5690 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases - Prom 64038 - 64097 7.0 - Term 64080 - 64117 3.3 68 28 Op 1 . - CDS 64129 - 65451 1458 ## COG0773 UDP-N-acetylmuramate-alanine ligase 69 28 Op 2 2/0.300 - CDS 65486 - 66130 797 ## COG0073 EMAP domain 70 28 Op 3 . - CDS 66155 - 66475 364 ## COG0526 Thiol-disulfide isomerase and thioredoxins 71 28 Op 4 . - CDS 66488 - 67144 967 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 72 28 Op 5 7/0.000 - CDS 67156 - 68352 1097 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 73 28 Op 6 . - CDS 68336 - 69085 263 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 69116 - 69175 8.4 + Prom 69015 - 69074 8.9 74 29 Op 1 . + CDS 69176 - 69328 133 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 75 29 Op 2 . + CDS 69370 - 69612 121 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 76 29 Op 3 . + CDS 69624 - 69935 518 ## gi|259501418|ref|ZP_05744320.1| hypothetical protein HMPREF0520_0928 + Prom 69937 - 69996 6.5 77 29 Op 4 . + CDS 70026 - 70919 850 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 70942 - 70978 3.2 - Term 70930 - 70966 2.2 78 30 Op 1 3/0.100 - CDS 71045 - 72022 979 ## COG3481 Predicted HD-superfamily hydrolase 79 30 Op 2 5/0.100 - CDS 72024 - 74417 2527 ## COG4717 Uncharacterized conserved protein 80 30 Op 3 . - CDS 74404 - 75627 1087 ## COG0420 DNA repair exonuclease 81 30 Op 4 . - CDS 75637 - 75987 469 ## lhv_1666 hypothetical protein 82 30 Op 5 . - CDS 76007 - 78085 1999 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 78145 - 78204 9.9 + Prom 78065 - 78124 9.6 83 31 Tu 1 . + CDS 78146 - 79024 843 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 79038 - 79078 -0.0 - Term 79018 - 79072 9.3 84 32 Op 1 . - CDS 79111 - 80025 1138 ## COG0191 Fructose/tagatose bisphosphate aldolase - Prom 80051 - 80110 5.0 - Term 80048 - 80091 0.5 85 32 Op 2 . - CDS 80121 - 81797 1971 ## COG0018 Arginyl-tRNA synthetase - Prom 81977 - 82036 9.0 - Term 81810 - 81849 5.4 86 33 Op 1 . - CDS 82059 - 83336 1161 ## COG1686 D-alanyl-D-alanine carboxypeptidase 87 33 Op 2 . - CDS 83320 - 85605 2735 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 88 33 Op 3 . - CDS 85609 - 86478 342 ## PROTEIN SUPPORTED gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 - Prom 86585 - 86644 80.3 + TRNA 86559 - 86642 57.7 # Leu CAG 0 0 - Term 86547 - 86614 30.2 89 34 Op 1 . - CDS 86854 - 87135 395 ## gi|259501431|ref|ZP_05744333.1| toxin-antitoxin system - Prom 87187 - 87246 5.7 - Term 87251 - 87296 9.8 90 34 Op 2 . - CDS 87308 - 87691 443 ## HMPREF0868_0554 hypothetical protein 91 34 Op 3 . - CDS 87675 - 87869 250 ## HMPREF0868_0553 hypothetical protein 92 34 Op 4 . - CDS 87886 - 88092 295 ## smi_0097 hypothetical protein - Prom 88127 - 88186 2.3 93 35 Tu 1 . - CDS 88194 - 88829 684 ## SAG0583 hypothetical protein 94 36 Op 1 . - CDS 88961 - 89158 236 ## COG3617 Prophage antirepressor 95 36 Op 2 . - CDS 89252 - 89431 164 ## LM5578_p11 phage transcriptional regulator, Cro/CI family - Prom 89485 - 89544 6.5 96 37 Op 1 . - CDS 89705 - 89884 160 ## gi|309810045|ref|ZP_07703891.1| conserved domain protein 97 37 Op 2 . - CDS 89894 - 90031 84 ## gi|309807050|ref|ZP_07701030.1| hypothetical protein HMPREF9212_0111 - Prom 90095 - 90154 7.0 98 38 Tu 1 . + CDS 90487 - 91176 642 ## HMPREF0837_10283 bifunctional S24 family peptidase/transcriptional regulator + Term 91311 - 91350 -0.8 99 39 Tu 1 . - CDS 91560 - 92264 758 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - Prom 92456 - 92515 7.5 100 40 Op 1 . - CDS 92541 - 94106 1842 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 101 40 Op 2 . - CDS 94125 - 94433 435 ## lp_3600 galactitol PTS, EIIB (EC:2.7.1.69) 102 40 Op 3 . - CDS 94451 - 94873 328 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Prom 95068 - 95127 7.9 + Prom 94989 - 95048 8.9 103 41 Tu 1 . + CDS 95085 - 95849 651 ## COG1349 Transcriptional regulators of sugar metabolism 104 42 Op 1 . - CDS 95994 - 96560 715 ## COG0406 Fructose-2,6-bisphosphatase 105 42 Op 2 . - CDS 96584 - 98212 1732 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 106 42 Op 3 2/0.300 - CDS 98234 - 100648 3264 ## COG0495 Leucyl-tRNA synthetase - Prom 100871 - 100930 7.9 - Term 100659 - 100697 5.4 107 43 Op 1 4/0.100 - CDS 100934 - 102400 1406 ## COG0477 Permeases of the major facilitator superfamily 108 43 Op 2 . - CDS 102393 - 103598 1741 ## COG0192 S-adenosylmethionine synthetase - TRNA 103726 - 103798 86.4 # Val TAC 0 0 - TRNA 103803 - 103874 62.4 # Glu TTC 0 0 - TRNA 103974 - 104063 47.7 # Pseudo GGA 0 0 Predicted protein(s) >gi|308169535|gb|AEHR01000029.1| GENE 1 98 - 844 907 248 aa, chain - ## HITS:1 COG:L92665 KEGG:ns NR:ns ## COG: L92665 COG1794 # Protein_GI_number: 15674208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Lactococcus lactis # 1 229 1 230 240 189 42.0 5e-48 MEHFFSIIGGMGTIATESYVRLINSRVKIKCDQDYLNYILVNDAQIPDRTAYIKDHTQPD FFPALRSDVLSQAQLKPDFFVMPCNTAHYYYNELASLTDVPFLHMMRIAIHNFIDNYPNE KKIGLIATEGSIYDHLYADELSKVGRQVEFGGPEIQPLVNELIYKNIKEKGIVDAQLFYK ILQLMHDKYGCHVILLGCTELSLAQEKASDHPYNVIDPQSIIADVTIDVALKIRQGIEPQ QALKKYMY >gi|308169535|gb|AEHR01000029.1| GENE 2 868 - 2427 1536 519 aa, chain - ## HITS:1 COG:L53929 KEGG:ns NR:ns ## COG: L53929 COG0769 # Protein_GI_number: 15673788 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 35 514 37 483 483 340 42.0 4e-93 MSESSISLNTCILILKEHHLLKSCATQDVVSTKMDYISYDSRDIKTNTLFFCKGKGFRPT YLSYAKENGAICYVAEQPYPEGKGMHALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGT KGKTTSAYFLKGILDKLNGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAV DNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVN SRKCIINAMTDHFDEIYAAATTTTNPDSIYLFARNDYDNPDLKRPIDFRFASVETDMCET KFKLYSETDAARNIPVEGNYSLKMIGDFNEINATAAIIGAGLAGVNYQDCYDGIKNVTIP GRMETLTTANHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFS ESLSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKEAKDD DVVLICGKGADPYQKIRGVDTPYPTDIKVAQEVINKLEN >gi|308169535|gb|AEHR01000029.1| GENE 3 2462 - 3643 872 393 aa, chain - ## HITS:1 COG:CAC0565 KEGG:ns NR:ns ## COG: CAC0565 COG0642 # Protein_GI_number: 15893855 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 88 381 209 497 499 155 33.0 1e-37 MKYNSCDEEVTFLSKKEKIRLILEAVVTFGLLCLLNLSLLVLLNLLILGSSKFVDGILLF NNTLNNWNHLPFFAWQKVIINVIFVLELFVVYLRMMRRYHQFQMYHIIKELHYIADGHFN YRIPFKFKGPLQDVVDSINALVDSTCMAISEEKAVEKSKDELIANLSHDLRTPLTSIIGY MSLLKMHQNSMLPAQRQEYLNIVFDKSLQMKSMTNDLFEYATLNFSHDKKLELEQIKISS LIEQIAAGFALEAEKKQIDIKTSCEPQDLEIAVDVKKIVRMFNNLISNAVKYGVGAKNIY VSVKKISNDMVQIIVSNDGQAIPQDALGKLFDRFYRVEESRSPKTGGSGLGLAITKTIVE MHHGTIFCTSNQKLTSFIIDLPINIQKNNLDVL >gi|308169535|gb|AEHR01000029.1| GENE 4 3633 - 4370 853 245 aa, chain - ## HITS:1 COG:lin2516 KEGG:ns NR:ns ## COG: lin2516 COG0745 # Protein_GI_number: 16801578 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 20 245 5 231 231 214 48.0 1e-55 MNCTNNNFYERLKGKKLVKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFRMD PSITCIILDIMMPEMSGLDLIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPF NPLEVMARIRSLIRRSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGIL YLLASHPGRVFSANEIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVG YKIEI >gi|308169535|gb|AEHR01000029.1| GENE 5 4354 - 5400 702 348 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229879751|ref|ZP_04499249.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Slackia heliotrinireducens DSM 20476] # 8 342 440 781 781 275 44 7e-80 MTQKDIRILAYESSCDETSTSIVKNGTEIESLIIATQIKSHQRFGGVVPEVASRHHIEVI TQITKEALAQANCTWKDIDAIAVTYGPGLVGALLIGVSAAKAASMATNITLIGVDHIMGH IMAAQLKDTIEYPALALQVSGGHTELVLLKSPIDFEIIGDTRDDAAGEAYDKIGRVLGVN YPAGKTIDTWAHQGQDTFKFPRAMLEDYDYDFSFSGLKSAFINTCHHADQINQKLDKYDL AASFQAAVVDVLAYKTMRAIKEFKPKTFILGGGVAANLGLRERLNREIAAINQDHQLKVI MPDLKLCGDNAAMIGAAAYNLYVAGQFSDLNLNADPSLELPYSDELYK >gi|308169535|gb|AEHR01000029.1| GENE 6 5420 - 5947 269 175 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase [Lactobacillus acidophilus NCFM] # 1 175 1 178 190 108 38 1e-22 MLRKFKSLFCKSDINMTFNPIKVKINGLQYLLRKADSSDIVNILDLQYQLCPRPLCWNIK YLTTEITNPENIYLVLYCRQQLAAVLGLKMSSDEGHIAFIGVKLEYQFQGIGTLLLQQAI TLVQNNYIDKITLEVNVKNVHAQRIYRKMGFIPDSIRKNYYATLQEDAINMVLKL >gi|308169535|gb|AEHR01000029.1| GENE 7 5931 - 6668 439 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 42 235 1 191 380 173 47 3e-66 MKVLSITTATDHLSVALTDGEQIIAEKNELGMHNHAERLDPLIDELLKQNQLTLQEIDRF AVAQGPGSYTGLRISITTAKMFASILNKPLVGVSTLKALAQGVTSNREILISELDARNLN FFAGVYLKEDGQLKQLLADGHYNLSKLLDKVAQLELDYPIVFVGSDIANYKSEIEAFFSP SQYRQAAAEENILHATNIGKLAVDEIAQDPDLFLPRYLRRTQAEMDWHRKTGKDFASDSE YVEEV >gi|308169535|gb|AEHR01000029.1| GENE 8 6682 - 7335 574 217 aa, chain - ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 27 213 57 239 245 87 27.0 2e-17 MSMLISYMMDTMSHLLDPCIKIEHAGWVVVNYQFDINKLPKYDDQITIKIDLCYYNRFFA YIKFLVKDLQENELVTINSQWILFDLLSRRMIELDSAKVGISDAQKIAKLPHFDRIKVLA GQEDFQRSYRVMYSDLDVNHHLTNGRYFDWIVNTIPRDFLNSHSMVAASIQFRKEILYDQ SAVVTLTWNADHSVSYHTIKRDEQILTVAKISWVSDK >gi|308169535|gb|AEHR01000029.1| GENE 9 7411 - 8265 760 284 aa, chain - ## HITS:1 COG:SPy0406 KEGG:ns NR:ns ## COG: SPy0406 COG0313 # Protein_GI_number: 15674543 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Streptococcus pyogenes M1 GAS # 1 282 1 285 287 262 48.0 6e-70 MQRQSSFNDETQGCLYLVPTPIGNLEDITLRAKRILMEVDYIAAEDTRTSGILLEKIGVH NKMISFHKYNSKQRAPELIALMKEGKKIAEISDAGMPVISDPGFILVQECIKNDIAVIPL PGPSAFATALIASGFDVQPFTYYGFLSRKATEQTAFFNKMATFTGTSIFYEAPHRLLKTL TNLQKVVGENREIVCARELTKIHEEFIRGSIGEITNYFAENAPRGEFVILLSPAKEEETI SIDQMLVEVNQAVASGMSNKDAIKNIAKKYNISKNELYDKYHQK >gi|308169535|gb|AEHR01000029.1| GENE 10 8268 - 8570 362 100 aa, chain - ## HITS:1 COG:SP0937 KEGG:ns NR:ns ## COG: SP0937 COG4467 # Protein_GI_number: 15900817 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 5 86 24 102 105 64 39.0 5e-11 MTNTVENLEIEMLDILKENTELKVENQLLREKINKLDHKENNGSVKPQAGLKSLRNIYDS GYHICNMYYGSHRDQGEDCMFCLDILDNFVNHGNLSNRKK >gi|308169535|gb|AEHR01000029.1| GENE 11 8637 - 9494 945 285 aa, chain - ## HITS:1 COG:aq_1855 KEGG:ns NR:ns ## COG: aq_1855 COG2812 # Protein_GI_number: 15606894 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Aquifex aeolicus # 13 171 26 184 473 101 37.0 2e-21 MVNLSNVDQQQTKILFDAYLHDKIAHAYLFIDPTGYTALATAYWLVCLLNCTGEHKPDAN CNNCQRILNGNHPDVFLVEAENKKSLSIDQIRPLKDELAKKPVEGSRRFFIVKDASSLTL SANNALLNLLEEPVAPVVTILIANNENTILPTVRSRTQIIHFAPTKQKSSVTEDLLTYGL NEDEIADMGDVSNLEQEITYLYQELCQQNELSIVRAYKISKLAAKSNLQKFVFYKLAKIA MEKIEKNKDYLFAPKLLQLLMECDKMRTNNVSFYNCLNYIVLSFN >gi|308169535|gb|AEHR01000029.1| GENE 12 9511 - 10200 682 229 aa, chain - ## HITS:1 COG:BH0042 KEGG:ns NR:ns ## COG: BH0042 COG0125 # Protein_GI_number: 15612605 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Bacillus halodurans # 16 224 1 208 210 199 47.0 2e-51 MGAFFAFYIKWQGWCVMKGYFISFEGPDGAGKTTIINELVQQLSSKTIAPILVTREPGGS KISENIRKIILDPKNKEMNAETEALLYAAARSQHVIETIIPALNAGKIVFSDRFIDSSLA YQGIGRDLGIDEIKQINEFATRHITPDLTLFFDIDPLKGLQRIQKVRPENEDRLEQENNL FHQKVYTGYKQLLSAYPERIKRVDAELSIAEVVSQSVKILEEYMPHMFK >gi|308169535|gb|AEHR01000029.1| GENE 13 10212 - 10445 122 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501362|ref|ZP_05744264.1| ## NR: gi|259501362|ref|ZP_05744264.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_02750 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0019 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_1147 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0035 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0019 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_1147 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0035 [Lactobacillus iners SPIN 1401G] # 1 77 1 77 77 119 100.0 7e-26 MKNKEKIKELGDANLINKISELQIYLSNQRILNQTTVDLSEENRILDLILHAKYHFLYDE AKYRHARSKYSNSVITQ >gi|308169535|gb|AEHR01000029.1| GENE 14 10442 - 11041 549 199 aa, chain - ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 199 1 198 198 267 61.0 9e-72 MQYPLPIAKLIDNFMKLPGIGEKTATRLAFYTLDMQDKDVEDFSQALIEAKKQIHSCSIC GNITDTDPCEICSNPNRDQTIMMVVEQAKDVMAFEQMGEYNGLYHVLHGVLSPMDGIGPE EINIKNLIIRLQKSDEIREVILALNSTPEGESTAMYLGKLIKPSGIKVSRLASGLAVGSD IEYANSITLKRAVQGRISL >gi|308169535|gb|AEHR01000029.1| GENE 15 11041 - 11370 612 109 aa, chain - ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 12 108 1 97 99 92 50.0 2e-19 MGRMPNLGGMGMGNMQNLIKQAKKMQQQMEAERESLNQTEFVGKSADDMVIATLTGDKKV KDLKIAPEAIDPEDPDMLQDLIIDAINKAISEVDVATEKTMGKYTKGLM >gi|308169535|gb|AEHR01000029.1| GENE 16 11416 - 13167 2024 583 aa, chain - ## HITS:1 COG:BS_dnaX KEGG:ns NR:ns ## COG: BS_dnaX COG2812 # Protein_GI_number: 16077087 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Bacillus subtilis # 1 579 1 563 563 402 41.0 1e-112 MAYQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAK AINCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYY KVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISN DQLVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAI TGYADQVKIEALFLDLLNRKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDT TVTFLSANYLEQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQDVNAT VSQTDAAEIKQLQTKVEQLSLQVAELLKKANTSAIAKPSEILTEIKDKVRPTKAVNQNVA TLKKKKTGLQLSTEANLKKVNVVLSQATKQDLNTIKDVWQQDMSSLLEVSQRALLEVLEP VAASPTQVVLKCKYEFWFERAMADENFITQLENNLEKLTQHKYQIVLVSENSWTTIRQEY VKKYKEHLIIAQKELASNPNEEVIKKAKSLFGDLVNVKDDSDL >gi|308169535|gb|AEHR01000029.1| GENE 17 13348 - 13794 535 148 aa, chain - ## HITS:1 COG:BH0033 KEGG:ns NR:ns ## COG: BH0033 COG0590 # Protein_GI_number: 15612596 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Bacillus halodurans # 1 147 9 154 159 160 47.0 1e-39 MKLAFLEADKAEQQGEIPIGAVIVDAEGNLIGRGYNRRELDEDATRHAEIIAIQEACKNL NSWRLIDCSLFVTLEPCPMCAGAIINARLKNVYYGAFDPKAGACGSVVDLFAFTKFNHHP QIFGGLYREQAAQQLKKFFKNIRQQNRI >gi|308169535|gb|AEHR01000029.1| GENE 18 13843 - 14457 667 204 aa, chain - ## HITS:1 COG:SP0841 KEGG:ns NR:ns ## COG: SP0841 COG2813 # Protein_GI_number: 15900728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Streptococcus pneumoniae TIGR4 # 5 204 2 196 196 194 52.0 7e-50 MENETQMYFATNPDAKHDEHLINYQLDELSLQFYTDAGVFSKTRVDYGSCVLLKVLKQLE ISGNILDVGTGYGPLGLFAAKLWPKSRVTMIDVNERALALAKRNAQLNEIDNVNIFSSDC YRNLDDQEQFGLILTNPPIRAGKQVVDDILQNAKKHLQVGGILLVVIQKKQGAPSAKKCL EQTYGNCEILQRDKGYYILKSVKK >gi|308169535|gb|AEHR01000029.1| GENE 19 14503 - 15132 496 209 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1632 NR:ns ## KEGG: FI9785_1632 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 205 1 205 208 232 52.0 7e-60 MHISWNFLGIFVWAILVIYVFFIIHNIRQRHLKMIIQKRRRFDAKTTIIDVIEILIFILA CSYMSVITFFDNPNFSNQQILTNKFEYQPLVLSTGATKSHYVTVTCRHNRKMKQSYRFFS EDQRITVKSNYASIAEGVDPFPVEAQIIPYNKKDLRAADDHYQKAYVAIYTATYKKNWQN GLGLHAGHVFIKYYLIRVPDRSFIKIIEK >gi|308169535|gb|AEHR01000029.1| GENE 20 15358 - 15615 84 85 aa, chain - ## HITS:1 COG:no KEGG:LJ0590 NR:ns ## KEGG: LJ0590 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 85 1 85 161 100 69.0 1e-20 MKIKSKILIQKIEKQDYLQDLESIKYSDITSAKLKTIAQKMIQEVIQASKNNSLLQTELV ITGQRPATFVLESNIINLPFANYKK >gi|308169535|gb|AEHR01000029.1| GENE 21 15915 - 16367 622 150 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 137 7 137 152 108 45.0 3e-24 MPYWLDIIINFTFAWIASVGFALTLNVPKRALIYCGHSGALGWMIYWFGIHAGWGRLTSN FLGALLIGIVGIILAKFKKCPVTVFNIPAIVPLVPGVPAYQAVRAMVIGDLASAQNLILR VFIVTIAIAMGFLLAQLVGEIWFKIHKVYH >gi|308169535|gb|AEHR01000029.1| GENE 22 16369 - 17178 1020 269 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 18 266 3 249 250 184 42.0 2e-46 MKKRVVDLKLTKQMVTENQYNDQVLDTCLKAGRLMIESGSEMYRVEDTMLRISRNANIPA ARCFTTPTGLFMSLGEHSKTQMTLIKNRNIDMTVVDKVNELSRAFADKKITLDQLHNKLC DLADHRQTFSNLMQIFGATILSCTLMVLFMDDYDWIDFPVAAIVGGSCYGIYLWIKKYSR VRFLGELVTAMIMGAMTIGICHIFPSLSMDNILIGSLMALVPGVPITNALSDLFRGDLVS GTVRAIEAFLTAIALGGGIGLAIKFLGGF >gi|308169535|gb|AEHR01000029.1| GENE 23 17144 - 17533 255 129 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1641 NR:ns ## KEGG: FI9785_1641 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 6 121 2 117 127 99 40.0 5e-20 MTNKNQKHRFFPVIYATVIGILAFIAVINVCKHTFQMTATHSLLISSLVALIFYISAYIL AYISNQIKYLVAKHCLSADDLAKITGLKSDYFPIHNNKLSLIVAKRKWLAILCKLREYDE KKGGRSKID >gi|308169535|gb|AEHR01000029.1| GENE 24 17703 - 18302 717 199 aa, chain + ## HITS:1 COG:no KEGG:LGG_02225 NR:ns ## KEGG: LGG_02225 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 110 198 243 331 332 144 77.0 3e-33 MGVISLKHKFIAIMTAISLLILNIAIQPVLATQVTNKINVSSALVRNTMKVQLMEQDFQL KQKKQADQAKLKAIKIKQQQWNQMEQKQAMQRAQKAKQAIVQAPKPQIRTVNKGTFKVSF YDPAVLGSRLGYHGVAANLNIFPRGTRLRITLSNGMVLYRVVNDTGSFAYSNPRQLDVAM PNSQIPAAGILYASVEVIY >gi|308169535|gb|AEHR01000029.1| GENE 25 18334 - 19437 1114 367 aa, chain - ## HITS:1 COG:BS_lytR KEGG:ns NR:ns ## COG: BS_lytR COG1316 # Protein_GI_number: 16080618 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 73 317 61 298 306 182 42.0 1e-45 MKISNKDKLQRNCVLAKEINRQPAKLVFLKLIGLVITIMLGMCVAVGTRIYFTMASSVRQ ANQGHVMADSSFIAQQKPFSVLILGVDQGIEGRHDQGNSDTMILVTLNPKKGVATMTSIP RDLLADIQPSKKFYMFRVNSAYQLGGNRAAVKTVSTLLNVPVNNYMEVNMKALKNLVDAL GGVDVKVPFSFTYNTKFVKGMQHLNGNAALDYVRMRKEDPQGDYGRQKRQRQVIEQLIHK GMTLKSLNNYRKILNVFAKYVKTNLTFNDMLSVAFKYRSCSHHIVQDYVHAHDAWIGGAA LQVASTSELQRVSDLTRSNLNLKKQKLHNEETRQNKLQKHLKWKKKDPFENYIIYERHFK TKVWTGK >gi|308169535|gb|AEHR01000029.1| GENE 26 19578 - 21377 2060 599 aa, chain + ## HITS:1 COG:BS_yjbG KEGG:ns NR:ns ## COG: BS_yjbG COG1164 # Protein_GI_number: 16078219 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Bacillus subtilis # 4 598 11 605 609 539 47.0 1e-153 MATPYRKDVEVDLTWDLTRIFKNDQEWEKEFAKIQQEIAELTTLKGKLSTSGTDLYENFS KILKVSREIEKVYVYSTLSSDQDTNNSHYLGFVARVQSLYNDFSAATAFVDPEILDIPEK TIEQFKKDEPRLAEFAHRLDTLNQKRKHTLSSDQEKIIAAASDALNTSENTYNILTNSDM EYGYVEDEDGNTEQLSDGLYSNLIQSQNREVRKQAFDTMFSTYGQFENSLASTLSGVVKA HNYNAKMHKYHSAREASLNENGVPTVVYDTLLAEVNKHINLLHRYVALRKKLLKINDLQM YDMYVPLTGQPSDHYDINKAKEIALEALKPLGEDYLKVVKHIFNDRVIDVVETKNKATGA YSGGSYDTDPYILLNWEGNLDSLYTLVHETGHSVHSWYTNHSQKYIYSNYPIFVAEIAST TNENILTEYFLKNITDPKTRAFILNYYLDSFKGTLFRQTQFAEFEQFIHESDAKGEPLTA EILNQFYGDLNQRYYGSSVTPGGQIAKEWSRIPHFYYNFYVYQYATGFAAATALSNNVVH GDKKQLEDYLNFLRSGSSDYPTEIMKKAGVDMTKADYLENAFATFEKRLNEFESLIGKF >gi|308169535|gb|AEHR01000029.1| GENE 27 21510 - 22505 1049 331 aa, chain + ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 15 331 1 315 316 406 63.0 1e-113 MKKIINDPQNLVDEMVQGMTRAYSSIVEQIPATNAIVRSDKASMQEKVGIVSGGGSGHEP THAGFVGKGMLSAAVCGQVFTSPTPDQIYEAIKAVNHGKGVYLVVKNYSGDVMNFDMAKD LAAMDDIEVKSIVVDDDIAVENSLYTQGRRGVAGTLFMHKVLGAAAQNGASLDEIDELAH AILPNIKTIAVALSAATNPMTGQPGFKLADDEMEYGVGIHSEPGYRREKIKSSKELVEEL ITKLNEELHFDSRNKYAMLVNGMGATPLMEQYVFTNDVLNKLDSFNITPVFMKIGNYMTS IDMAGISLTIFEIKDDKWLEYLNYPVQTIAW >gi|308169535|gb|AEHR01000029.1| GENE 28 22518 - 23102 551 194 aa, chain + ## HITS:1 COG:L46694 KEGG:ns NR:ns ## COG: L46694 COG2376 # Protein_GI_number: 15672231 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 10 191 9 191 192 179 51.0 3e-45 MELDATQLKKWMELFSKKITANEKYLCELDAPIGDSDHGFNMKRGMDAVVTKLNSAPDEL TICFKTIAMALISTVGGASGPLYGTAFLEMAKESQKSNNIVDLLEAALAGIKKRGGATIG DKTMVDVWSVVIEAIKQDALTTEKIEAAVLATKDMIAKKGRASYLGERSINHIDPGSQSS GYLFESLLEVINNK >gi|308169535|gb|AEHR01000029.1| GENE 29 23099 - 23467 425 122 aa, chain + ## HITS:1 COG:BH3395 KEGG:ns NR:ns ## COG: BH3395 COG3412 # Protein_GI_number: 15615957 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 3 122 6 125 128 119 55.0 1e-27 MSLGITLVSHSPKIVAGLSDLLSQVAKDVSITIAGGTEQNDIGTSMDKIMTAFEENKADE ILAFYDLGSAKMNLEMAQEFASKKIHLYDVAFIEGAYTAATLLQAGVDLSTIEAQLAPLK IK >gi|308169535|gb|AEHR01000029.1| GENE 30 23647 - 24519 994 290 aa, chain - ## HITS:1 COG:lin1322 KEGG:ns NR:ns ## COG: lin1322 COG2017 # Protein_GI_number: 16800390 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 4 275 2 275 290 194 34.0 2e-49 MEQVTIENDVLAIKVALLGAEVQEVKSLKDNFSYIWYADAKYWGRHAPVLFPFIGRSYEN KYLIDGKEYNMKQHGFLRDQVFKIVDKQKNKLVLQHSATEGTKLVYPYSYTVTITYTLED TYLHINYDIDNNDAKDMYYSFGFHPGFNLNSDLSNYSLQFEPKLNSLPTLLVEPNPFRNG KIADTQLQNGKLELNYPMLDNGVKIYDISDIRTVSLISCRDAHQVTEDIADFPYLAVWSP ENKKAPFLCVEPFRGLPDQYGKTIDIKDKLGEQHIAANSNDQFTVSLNFK >gi|308169535|gb|AEHR01000029.1| GENE 31 24704 - 25381 740 225 aa, chain - ## HITS:1 COG:no KEGG:FI9785_565 NR:ns ## KEGG: FI9785_565 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 223 1 224 226 270 58.0 5e-71 MDTIDKFRQINPNYKIYDIHDSSFSDYGVVYPFDNVSEIDDVISQYAKPKDGMKYVSPIK ELESKHLINKIKYDIFGDMPIDVGLTFGHSEEFTAFEYHQCSEVNIMLDDVIMVLGKRQT LETYGTIDPNREAKMFYVPKGSIIELYNDTLHYAPLQVTSEGYKVVVIVISGTNTSLSEN VVTANPRLVKKGKFQVVHACRKDKLAQGYKLAVVGDVIKTNSLKM >gi|308169535|gb|AEHR01000029.1| GENE 32 25394 - 25969 863 191 aa, chain - ## HITS:1 COG:SA1996 KEGG:ns NR:ns ## COG: SA1996 COG0698 # Protein_GI_number: 15927774 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Staphylococcus aureus N315 # 22 191 3 171 171 182 52.0 4e-46 MLDNDRPQPEYVDPAIDKHVVVALANDHIVTPIKMALSDHLKDEGYQVLDFGTYDNSRTH YPIYGKRAAEAVATGRADVAIVMCGTGIGISTAADKNDGVRAAMVGDVAQAKYAKRELNA NILGIGGIVLGRDFIFYIADAFLNEKYHETPENKKLIEKIDHIATPNPEQTGNEHFFDEE NKKWAEGVYHD >gi|308169535|gb|AEHR01000029.1| GENE 33 25987 - 26415 605 142 aa, chain - ## HITS:1 COG:SA1997 KEGG:ns NR:ns ## COG: SA1997 COG0698 # Protein_GI_number: 15927775 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Staphylococcus aureus N315 # 1 141 1 141 142 127 46.0 5e-30 MKVVIGSDKDGFALKETIKEWLTSNDYEVVDVTPEPAEDFVESSLKVTHEVLENNIKKAI MFDKYGVGSAMASNKVKGMVTADVNEERTGHMTAMHNGAKALAIGSGIVGETLAKSIIEY YLHTEYAGGRHQVRLDMLEKMI >gi|308169535|gb|AEHR01000029.1| GENE 34 26425 - 26976 564 183 aa, chain - ## HITS:1 COG:SPy1712 KEGG:ns NR:ns ## COG: SPy1712 COG1349 # Protein_GI_number: 15675565 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Streptococcus pyogenes M1 GAS # 10 180 79 248 256 142 39.0 2e-34 MRNVRFTFLKKKKLLKKAAKLIKDGETVYVGPGTTLEFMVAELKQKKLRLVTNSIPVFEA ARQNANNYDLILIGGSYRRTSGACIGALANHDLKSMGYDRAFVGVNGIIDDALMTANMEE GLTQKIVLDRAVHKYVVCDKFKLNKNDFYNFYKLSDIDRLITNHDVAKKLVDYYGQFIEI DNS >gi|308169535|gb|AEHR01000029.1| GENE 35 26918 - 27184 231 88 aa, chain - ## HITS:1 COG:SPy1712 KEGG:ns NR:ns ## COG: SPy1712 COG1349 # Protein_GI_number: 15675565 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 84 1 84 256 74 46.0 5e-14 MLKQERFSKIVNILSTEEIVQVSDLANMMNVSEMTIRRDLRELDRRGKVLRVHGGAQSVS SSLIIEKNFNEKREIHVPEKKEVAKKSC >gi|308169535|gb|AEHR01000029.1| GENE 36 27301 - 28239 1056 312 aa, chain - ## HITS:1 COG:lin0543 KEGG:ns NR:ns ## COG: lin0543 COG3684 # Protein_GI_number: 16799618 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Listeria innocua # 2 308 20 325 338 304 52.0 1e-82 MGVISAVAIDQRGSLKKMLAEAANKPADETAIVDFKKAISSELTPYASAILTDPEYGLPA TKVRDKNCGLILAYEKTGYDTTEPGRMCDLIANQSVRRIKEEGADAVKFMLYYDPEEPDA INDKKKAFVERVGAETKAYGLAFFLEVVTYDGSMDSVKSEEYAKIKPKKVFMTMEEFSKP QYEVTVLKVEVPFNIHYVAGFNGDNKALYTVDEAKAMFKKQSDLTDLPYIFLSAGVTSEE FIAELKMAEEAGAEFNGVLCGRATWKPSIKPFAAEGESVGRNWLATQGKENIENLNHALI GAKSWKNKLTVE >gi|308169535|gb|AEHR01000029.1| GENE 37 28343 - 28561 236 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309803498|ref|ZP_07697591.1| ## NR: gi|309803498|ref|ZP_07697591.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF0522_0043 [Lactobacillus iners UPII 143-D] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF0522_0043 [Lactobacillus iners UPII 143-D] # 1 72 9 80 80 124 100.0 2e-27 MSVEERKHCELMFRWALLVIIVNAISIFFKGIVFINIAALIVTVYALYRMVVYENKNNRN SKKYYDYRGLPK >gi|308169535|gb|AEHR01000029.1| GENE 38 28640 - 30052 1660 470 aa, chain - ## HITS:1 COG:CAC2956 KEGG:ns NR:ns ## COG: CAC2956 COG3775 # Protein_GI_number: 15896209 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Clostridium acetobutylicum # 1 467 1 465 470 532 60.0 1e-151 MDVVIKFANAVFKPLIDMGAPTIMLVVLTIIALLFRVKFSKALEGGMKLAIALTAIGSVM NLLTTAFQGPMKLFVEHTGMHKDILDMGWAPLATITWGSPYTLYFLLVLIILNVIMLVAK LTNTLDVDIFDIWHSAFVGLFAVFCGAPLWLATILILLIGYLKIVNSDLMKPTFDDLLDA PESNPMTTTHMNYMMNPIIMVFNKFFDKCLPWLDKYDFDSAKLNEKIGFWGSRFAIGVYL GVFVSLLAGYNFTTEEGWKTMFTLSFTAGACIELFSVIGSWFIASVEPLSQGISNFATSK FKGRTFNVGLDWPFLAGRAEIWAAANVLAPIMMVEAMVLPGNRLMPLGGIIAMGVTPALL VVTRGKILRMIVIGTIELPIFLWAGTLAAPFITKVAHQVGASIPAHTLVSDTTMEGPIEK FLGYLVGNAWKQQGMFIVYALLAIAAYVLIFWWYSLEMKKRNAEYAKKNA >gi|308169535|gb|AEHR01000029.1| GENE 39 30088 - 30402 481 104 aa, chain - ## HITS:1 COG:SP0646 KEGG:ns NR:ns ## COG: SP0646 COG3414 # Protein_GI_number: 15900549 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Streptococcus pneumoniae TIGR4 # 5 100 2 97 101 133 63.0 7e-32 MAKQVKMVAACGAGVNSSHQIASAIEEEMKKRGHNIKCDAVMVKDVNEDLLSGYDAYLTI AKTDLAFTPKIPLIDASPILYRIPAMAQPVYDKVEEVVKKIEKM >gi|308169535|gb|AEHR01000029.1| GENE 40 30433 - 30921 625 162 aa, chain - ## HITS:1 COG:CAC2958 KEGG:ns NR:ns ## COG: CAC2958 COG1762 # Protein_GI_number: 15896211 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Clostridium acetobutylicum # 4 157 6 157 164 124 41.0 1e-28 MPNTSLFAKDAVYISDSVDRDMVFSDVYRNLLKAGYVKGNFLSHVLEREDLYPTGIDTSP ISKELPNIAIPHTEGEFVNARLIVPVLLKHPIRFNNMVDPQKTLDVSFLFMILNNDPTGQ ANVLAQIMDFLAHTSVDKLMELFSLDSTKEIYDFLTENFKQA >gi|308169535|gb|AEHR01000029.1| GENE 41 31123 - 33141 1632 672 aa, chain - ## HITS:1 COG:no KEGG:FI9785_78 NR:ns ## KEGG: FI9785_78 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 672 1 672 672 954 65.0 0 MNYKYCLRYVLDPFSNTEKKNKALFDFVKKAKIDDVCFILNGEELNHSHLTESEIKKWLD VIIPLQHELAKMNITTSINPWTTIMHSDRGFTVNPKIGFNTFVDIQGNKAKDMACPADPI WRKYICKCYAQYASIHPKYLWLEDDFRHYNHTPFKLMCFCPYHMNIYQKKLGKKESISEF AQQMLKPGKPTLERKIYLDQARKEMIENEKLIEKTVHKISPETDIAQMTSFPDWHAIEGR DWASLFDAQCGTGHPRVARPHLPAYNEVSPIKYGRDFESYSRITAAYLGSNAILFPEQEN AMWTPMVKSKEFIIFQIITTILLGAQGILLNLFDMMGNGVSPEWKYAEMLSKIKPFMSEL SKHRMYIDQLSGIKILVDQDSAYSIRTNKGQKIEELLPIDKEWAGLLSSFSFATTIKPIT HIDCKLVGEVIAISGQILRNFSDIEIINLIKNNVVLMDGESIQVLLDRKLSNLIGVESGE WHCCKTGYQSFEEADGVIVDEVNNPRVTMLQHTGNYLQLTYEKNAKVKIWSSAKNSIDKR LGPVMSIVNDRTVILPISHDFKYGWESQYSTYKQGLLQKMLSSIKKCDYLIDMPNVKLNI DMIQHVMWISNFSLDTYNQIKWKFSEKPVKQITLIRRTKSAFRKEIINIKIQDDIAIIKA KVKPLETIQILF >gi|308169535|gb|AEHR01000029.1| GENE 42 33206 - 33604 517 132 aa, chain - ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 128 1 126 134 141 54.0 3e-34 MEKELILISHGIMAKGLKESCELIMGPQEHIHYVCLLPEEGPDDFQKKFELEISGLELDN LDVFCDLMGGTPCNVVSRLIMEGKNINLLSGMNLPMVIGWVNSQMIGDSSDYVAVAQQGV VNVKEYLASIRS >gi|308169535|gb|AEHR01000029.1| GENE 43 33623 - 34441 984 272 aa, chain - ## HITS:1 COG:SP0063 KEGG:ns NR:ns ## COG: SP0063 COG3716 # Protein_GI_number: 15900008 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 4 267 2 265 271 330 61.0 2e-90 MMNSNNQYKLTDKDFQQINKRSLFAYQLGWNYERMQNSGYLYTILPQLRKIYGDGTPELK EIMKMHSQFFNTSNFFNTVVTGIDLAIEEKQGLKGKQTVNGLKVGLMGAFASIGDSIFAS LIPTIFGALAAAMAKEGNPIGLLIWIAANIAICVFRWKQLRFAYEKGTTLVTEMRDKLNA LTDAATVLGVFMVGALVATMINVKFSWVPKIGAVSMDIQDNLNMIIPKLLPALIVGFVYW LLGKKNMTSTKAIIIVLVVCIVLGGLGILSKA >gi|308169535|gb|AEHR01000029.1| GENE 44 34428 - 35333 1186 301 aa, chain - ## HITS:1 COG:SP0062 KEGG:ns NR:ns ## COG: SP0062 COG3715 # Protein_GI_number: 15900007 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 1 301 2 301 301 282 50.0 6e-76 MAWWQIILITLYSGVQILDELQIWSGLNTPIGAGFIVGLIMGNIPVGLFIGASMQLMILG VGTFGGASRIDATIGTVLATAFSISIHGMSPQVAISSIAVPVATIMIQLDILARFTNTYF AHRIDHDIETFNYKGIERNYLLGALPWALSRAIPVFLALAFGRGLVQAIANALNGSWAWL GNGLSLAGATLPAVGFAILLRYLPVKKHVAYLILGFTITTLFSVIFSNVQSLGTGIAAIS KGFSVKFNGMPMLAIALLGFALSIMHYKGSVNEDKENVTKNAVKLADSSDETKGEITDDE L >gi|308169535|gb|AEHR01000029.1| GENE 45 35345 - 35836 700 163 aa, chain - ## HITS:1 COG:SP0061 KEGG:ns NR:ns ## COG: SP0061 COG3444 # Protein_GI_number: 15900006 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 157 1 157 158 158 49.0 4e-39 MNIVGVRIDGRLVHGQVANLWTPKLQADRIIVLDEQIINDNIQKSGLRMATPRTTHLSVL DYKTAADHLLNDRYGTQRLLLVAKRPKEFLDLIDEGVKIDSINVGTMSQTNTTQMITKQI NVEQEDIKVFDELNAKGVHLFAQLNPSVEAHDFMKLLNDKINR >gi|308169535|gb|AEHR01000029.1| GENE 46 35915 - 37087 1450 390 aa, chain - ## HITS:1 COG:SP2056 KEGG:ns NR:ns ## COG: SP2056 COG1820 # Protein_GI_number: 15901876 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pneumoniae TIGR4 # 1 384 1 382 383 358 47.0 7e-99 MTYFIHADKFFLENVTETGGYLEIDDNGNFGFYYSENKKPDGKIIDYVGKYVAPGLVDTH IHGLLNEDVMKSDWDGINKISEGLLQAGVTSWVPTTITDSSDRLINICEKFAKHKGEETG AKILGLHFEGPYFTEKHAGAENTKYMCDPSIDELYKFKAASDNMLIKMSIAPERKGAKEF VREAVKSGVIISLGHSASNFADAIACVEAGASMFCHTYNGMEPMSQHSPNLLGAAFSARL VTDELICDGHHVLQPTIRALIQAKGVEHICLITDCMQAGMMPDGDYVLGELPVYVEKGVA RLKTKGNSLAGSVLLLKQAVENLVNWNIATPEDAIMMASYVPAMSIGKLAQCGSIKPDKP ADFIVLNKDMTLCETYLNGVLRYKNKEQVN >gi|308169535|gb|AEHR01000029.1| GENE 47 37099 - 38268 1116 389 aa, chain - ## HITS:1 COG:SPy0716 KEGG:ns NR:ns ## COG: SPy0716 COG2222 # Protein_GI_number: 15674774 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Streptococcus pyogenes M1 GAS # 1 387 1 389 399 388 49.0 1e-108 MFIQSDEELEKKGARITTREIQQQPELWKQTFDIYKSKEKEINNFLDKIYSECGKIRVIF TGAGTSAYVGNTVMPYLSKNGDRSRYRFEAIDTTKIVSTPECYLEENTPTLLVSFARSGN SPESVATVEIAKKMVKNLYQIAITCAPDGNLAQDLKNDPKGLVVLMPIKSLDQGFAMTGS FSCMSLATLLIFDTISDYSKSKIIESICSMGSSVLNSESLIQNLVNTNFNRIAYIGSGAL GGLAEEARLKILELTAGQVAALFDTSMGLRHGPKSFLDNKTIVFGFVSNNAYTRQYDLDI LNEIRDDKIVPLIMGIGQKKLGQDFEGEFFEIKNDNLLPDAYLALPDIMFAQTIALMTSI KVDNKPDTPSPTGTVNRVVKGVIIHEYKK >gi|308169535|gb|AEHR01000029.1| GENE 48 38290 - 39000 742 236 aa, chain - ## HITS:1 COG:SPy0715 KEGG:ns NR:ns ## COG: SPy0715 COG2188 # Protein_GI_number: 15674773 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 4 235 6 237 240 144 37.0 1e-34 MTNPIYKKLIAELKKIIETNLQPNQKLPSERKLVQIYQVSRNTVRLALNELEQKGYIYRI HGKGTFVSSIFLNQTNLGTMYSFSDEMNLEGRTPTTKNLSLRLLIPDKNISLQLNLSEGE KVYELIRLRLANDEPLIYSKTYLPQKFFPELKIEELNKDTLYGVMEKIYKQSSVLALEDI QAVNLSAEESKILHVKNNAASLKINRRLINENNIPIEFTKALARGDKFVYRSKQYK >gi|308169535|gb|AEHR01000029.1| GENE 49 39664 - 42858 2279 1064 aa, chain + ## HITS:1 COG:HP0464 KEGG:ns NR:ns ## COG: HP0464 COG0610 # Protein_GI_number: 15645092 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Helicobacter pylori 26695 # 11 1032 3 1022 1055 558 36.0 1e-158 MTKYQTKNHEFNEATRVQMPAIIHLTRLGYQYAGKFTEKDAGTVFDEDTNILIDIFKKQF IRLNPEHEGEALEVLTSIKQELANDDLGKSFYKHLISISPTRLIDFDHPENNVYHCTGEF TCKNGQDEFRPDITLFVNGLPLVFVEVKKPNNIGGMVAESKRMNQQRFPNSKFRRFINIT QLMIFSNNMEYDAEGGITPIQGVFYCTGARKSTKFSTFREDNPHGDKIAPYNADYPYEEV NLNVEKRILTDFNVQVIHTTSEYQTNKDPYSPTNRVLTSMCSPERLLFLLHYGIAYVHSE KEVEGKIEVTDQKHIMRYQQMFAALAVRETIHKGIKSGVIWHTQGSGKTALAYHLNGVLT DYFAKHNKVAKFYFIVDRLDLLEQASDEFKARGLEVKTANTRSELMAQFRTTQSLEGNSG NREITVVNIQRFAEDQKKVDLSGYATNLQRIFIVDEAHRGYNPAGSFLANLFEADKDSIK LALTGTPLLKKERASWKVFGNYIHTYYYDKSIQDGYTLKIIREDIETAYRDKLSKIYDSI EHLVQKKEVPKAEIVEHDKYVKELLHYIINDFNRFRIKEGDQTLGAMIICETSTQAKKMF NYFDEIQNELSKNPSYNSNLRAGLILFDSDDKETRKQTVKDFKKNMTVDILIVFNMLLTG FDAPRLKRLYLGRRLKDHNLLQALTRVNRPYKDMRYGYVVDFANIKENFDTTNRAYLHEL NRFNNTEETDEIGSKNLITSVIEDPQILLNNVYEARQVLFDLNLNNAEIFSTQISSINDK DNLIEIRKSLLSIREAFNIARTFGDDELKTQMEQLNIEKLPVMLSEVEHAISNINQKEAF STSDETRHIINEAMLDIEFKFRLKGTPEEMKIATGAEQELKEKWKRTIQAFTTNIDQDDP TYITLREAFMQRFREHGFVIDKIADYDSEAKALDNIYEKLLVLKKKNNALRTKYNGDVKF VRVHKRIKEENASRHKEGKSEIVAPYDEQIVIFLSNIKNSIDDKVYDKSDILKKDAYFEK TVMTQITSNLNKLNFSTDHNDRLFIQRQISRQYISQYNNTYAAI >gi|308169535|gb|AEHR01000029.1| GENE 50 42845 - 43033 175 62 aa, chain + ## HITS:1 COG:HP0463 KEGG:ns NR:ns ## COG: HP0463 COG0286 # Protein_GI_number: 15645091 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Helicobacter pylori 26695 # 13 58 9 54 487 70 73.0 7e-13 MLLFNGGRMNQTIKEQTITLIDALKAICQSYGLGNDGNEYKIITQVFLYKFLNDKFGYEI KK >gi|308169535|gb|AEHR01000029.1| GENE 51 43216 - 44496 1106 426 aa, chain + ## HITS:1 COG:jhp0415 KEGG:ns NR:ns ## COG: jhp0415 COG0286 # Protein_GI_number: 15611483 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Helicobacter pylori J99 # 4 426 121 543 543 442 51.0 1e-124 MKSIANDNLEIFSTQTTEKTKIPLFEKLTPYVTDDAQRAPFARALVDKLVNFSFEAAFNE NYDFFAAIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDNTDLHDIEVYDPSAGT GTLLIALSHQIGQDRCTIFAQDISQRSNKMLKLNLILNGLVSSLDHAVQGDTLTHPYHKS NDGKELRQFDYVVSNPPFKMDFSDNREELASMPVRFWGGVPKIPAKKKEKMAIYTLFIQH VINSIKSNGKGAIVVPTGFLTVKKGVENKVLHYMVDKKIIRGAISMPSNVFANTGTNVSV LFFDKSQEHDKVVLIDASKMGEEYKDGNNQKCRLRPNEIDQIVHAFRDNKAIDNFSVVVS YDEIKEKKYSLAAGQYFDVKIEYVDLTPEEFQEKMQNYQNTLQELFNEGDKLKNDIMEQL KKVKYE >gi|308169535|gb|AEHR01000029.1| GENE 52 44489 - 45739 526 416 aa, chain + ## HITS:1 COG:jhp0414 KEGG:ns NR:ns ## COG: jhp0414 COG0732 # Protein_GI_number: 15611482 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Helicobacter pylori J99 # 74 229 74 229 409 76 32.0 1e-13 MSNKQNITINRLDTLCSDIIDCSHSTPVWRDRGIRVIRNFNLNEGSLDFSKGAFVDEKTY LERTKRAVPEAEDIVISREAPMGTVAIIPHNLKCCLGQRLVLLKVNSDICSSSYLLFALM SGFVQNQFNKIGSTVSNLTIPELKETKIPLVKNHKAIGKLLESIANKIQVNKQINDNLAA MIKTIYEYWFIQFEFPDENGKPYKSSGGKMVWNEQLKRTIPQGWSVESIINTPLCYPIKP GIKPFSEKTYLATADVIGTSIGTGNPINYETRESRANMQPEINSVWFAKMKSSIKHLFLS SSMHDFIHSSILSTGFQGLQCTERSFEYIASFIGNDYFETLKDQLAHGATQEAVNNDDLK GVKILIPDNRTLDLYHSASRQNYQLIGSALIENKHLESLRDWLLPMLMNGQATIED >gi|308169535|gb|AEHR01000029.1| GENE 53 45736 - 46158 127 140 aa, chain - ## HITS:1 COG:SA1625 KEGG:ns NR:ns ## COG: SA1625 COG0732 # Protein_GI_number: 15927381 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 8 117 69 179 409 57 38.0 6e-09 MQFSKDGLVYISDKQAAKLKNASIESDDVLLNITGDSVARACIMDSKYLPARVNQHVSII RCDPNKIKSQYLLYYLQYLKKHLLKMASVGSTRKALTKEEISGLLVELPSIEKQKEITLL LESVRHKMQINRQINDNLAA >gi|308169535|gb|AEHR01000029.1| GENE 54 46290 - 47270 465 326 aa, chain - ## HITS:1 COG:SP0890 KEGG:ns NR:ns ## COG: SP0890 COG0582 # Protein_GI_number: 15900773 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pneumoniae TIGR4 # 3 325 2 320 321 355 58.0 7e-98 MKENLIKDIELQMQRVLNNKQLKQLNHVLVHAFQNVDMTVTSTNEEKEADYIALFLAAKK IEGRSEKSLKYYESTILKMTEKVGKDARYITTEDIREYLSNYQLNHKSSKVTIDNIRRIL SSFFSWLEDEDYILKSPVRRIHKVKTGQSIKETYSDEELEIMRDSCTKIRDLAIIDMLAS TGMRVGEMVLLNRDDVNFEERECMVFGKGDKERIVYFDARTKLHLEKYLDSRTDNNSALF TSLSAPHERLGIAGIEARLRKLGGELGIYKVHPHKFRRTLATKAIDKGMPIEQLQKLLGH QRIDTTLQYAMVKQSNVKMAHRRYIG >gi|308169535|gb|AEHR01000029.1| GENE 55 47380 - 48072 339 230 aa, chain - ## HITS:1 COG:jhp0414 KEGG:ns NR:ns ## COG: jhp0414 COG0732 # Protein_GI_number: 15611482 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Helicobacter pylori J99 # 1 216 181 396 409 219 49.0 4e-57 MIKTIYEYWFIQFEFPDENGKPYKSSGGKMVWNEQLKREIPDSWRTEKLLNIVSWESNSQ PPKSEFIYSPKDGYVRFIQNRDYENDSYKTYIPLTNNLSTVNRFDILIDKYGDAGVVRYG IEGAFNVALGKINVLYPNCQEYVRSFLESDGIYSYLHNSCMASTRASLNESNLDMLNIVI PDENSLLRYQEDIHQIRETILLNNSENQNLISLRDWLLPMLMNGQATIED >gi|308169535|gb|AEHR01000029.1| GENE 56 48340 - 49899 1758 519 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0421_20066 NR:ns ## KEGG: HMPREF0421_20066 # Name: pfo # Def: perfringolysin O # Organism: G.vaginalis_ATCC14019 # Pathway: not_defined # 34 519 62 541 541 518 54.0 1e-145 MNKKGLRKIIYASSLALLELSLVTATKPAQAATNTEPKTAIVAKHNTEEPMSVNDYLLGL DYDSQAVLTRQGDMLTNHFAHETTTDNNGRFVVVEKQKKTISNSTSSISVTTANDSRVFA GALFKADNNLIENNPTLVSLRRAPITVSVDLPGMTDNTNAKLVAHPTTSSVNSAVNDLVE KWIAKDSVNHAIPARIEYDTTSAQSMDQLKVKFGADFAKISVPLKIDFDAIHNGEKQASI VNFKQIYYTASVDAPENPGDVFDAHVTAKDLQKRGINSKTPLVYVSSVSYGRSMYIKLET TSKSDKVQAAFDAAIKGVKIAPNSEYDHILKNTSVVAVILGGNSGDATEVVRGDINTLKE LIQKGSKFDSSNPGVAVSYGTSFLKDNQVAVINNTADYIATKVTEYSNGKLILNHKGAYV ARFFVDWDEVSYDSNGREVLTHHTWADNGRGRTSGFSTEINLKGNVRHLNVKIQECTGLA WEWWRTIYDEQDLPLAHLRQITIWGTTLRPKHKEEVKND >gi|308169535|gb|AEHR01000029.1| GENE 57 50101 - 50577 650 158 aa, chain + ## HITS:1 COG:no KEGG:FI9785_192 NR:ns ## KEGG: FI9785_192 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: Pyrimidine metabolism [PATH:ljf00240] # 1 158 1 158 158 262 77.0 3e-69 MSEQKTVYFGAGWFSDVQNRAYKDAMDALAANPTINLKDSYIPLNNQYKGIRVDEHPEYL HDKEWAQATYNGDLIGIRSSDIMLGVYVPDEEDVGLGMELGYAQGQGKYILLVIPDEFYG NPINLMSWGVADNIIPMSKLKDFNFNQPRFGFYDGAVY >gi|308169535|gb|AEHR01000029.1| GENE 58 50706 - 52442 1986 578 aa, chain - ## HITS:1 COG:lin1002 KEGG:ns NR:ns ## COG: lin1002 COG1080 # Protein_GI_number: 16800071 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Listeria innocua # 1 568 1 566 572 702 62.0 0 MTEKLKGIAASEGIAIAPAYLLVEPDLSFSKSKVTDLEAEVARFKEAIDESTKELEAVRD QAKKNLGEEEAQVFDAHLLFLSDPEFSGAIENEIKNNSINAEAALDAISNNFISIFESMT DNAYMQERAADVRDVSKRIMAHLLGVTLPDPATIDHEVVVIAHDLTPSDTAQLNKKYVKG FITDIGGRTAHSAIMARSLEIPAVVGTNTITQDVNNGQMVIADGLDGNVLIEPSAAEISS FDEKGRKFAEQKAEWKKLKDQPSQTADGKHFTIAANIGTPDDMKGVLENGAEAVGLYRTE FLYMDSSDFPTEDAQFEAYKAVIEGMKGKQVIIRTCDIGGDKHLDYWDLPEEMNPFLGLR AIRLSMHNKDIFKTQLRALLRASAYGKLGIMFPMIGTLTELRKAKAILAEVRAELEAKNV KIGEDLQVGMMIEVPAAAILADQFAKEVDFFSIGTNDLIQYTMAADRGNDGVSYLYQPYN PSVLRLIKNTIDGAHQNGIWCGMCGEAAGDSVMFPILLSMGLDEYSMSATSILRIRSLMK KISLEDVKELANEACYVSETFEDNAKLVAETLKKLNIN >gi|308169535|gb|AEHR01000029.1| GENE 59 52442 - 52708 455 88 aa, chain - ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 108 71.0 2e-24 MEKREFKVIAETGIHARPATLLVQAASKFSSDINLEYSGKSVNLKSIMGVMSLGVGQGSE ISISAEGDDEKEAIDAIADTMKKEGLAE >gi|308169535|gb|AEHR01000029.1| GENE 60 52836 - 53009 324 57 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1388 NR:ns ## KEGG: FI9785_1388 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 56 1 56 60 66 55.0 4e-10 MDYQEILEKIVNGELAEYKVEPQTAFEFQRVLRNFQRRSEIQGVAQVGGSIIYRLAK >gi|308169535|gb|AEHR01000029.1| GENE 61 53139 - 55280 1587 713 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 53 713 125 806 815 615 47 1e-175 MLCQNCHQRPASIHLYLNNNGENREIALCEDCYQLLKNENGSANMNNFFSSFNDLLGSLG GSTQDFDQPRDNSPKKNKANNGSDSLLNQYGIDLTALAKQGKIDPVVGRDKEIARVIEIL NRRTKNNPVLIGEAGVGKTAVVEGLAQQIIDGSVPAKLQNKKIISLNMVSLVQGTSLRGQ FEQRMQQLIKELESDPNIILFIDEIHELVNAGNAEGGMDAGNIIKPALARGDFQLVGATT IKEYRQIEKDSALARRFQPVEVKEPSIEETIKILQGIKKKYEDYHHVTYTDQAIVSAVTL SSRYIQDRFLPDKAIDLLDEAGSRMNLTIPYVDDAKLKERVEAAQELKQTALKNEDYEKA AYYRDQIEKYEKLKDQKVDPDKTPVISEKVMEKIIEEKTNIPVGDLQKQEQMQLKNLADD LKKHIIGQDKAVDVISKAIRRNRVGFNKSGRPIGSFLFVGPTGVGKTELAKQLAKQMFGT EKSMIRFDMSEYMEQYSVSKLIGSAPGYVGYEEAGQLTEKVRHNPYSLILFDEIEKAHPD VLHLFLQILDDGHLTDSQGRTVSFKDTIIIMTSNAGQGIKSASVGFSAENNHNEQFKKVL GQYFKPEFLNRLDDIVEFEPLSKESLIQIVDLMLDKTNEMIKDQDLHINVTPEAKDLLVE KGYDPDMGARPLRRVIQAMIEDKVADYKLDHPTAKNLTAKRHENDIIIVEDNQ >gi|308169535|gb|AEHR01000029.1| GENE 62 55335 - 55613 350 92 aa, chain + ## HITS:1 COG:no KEGG:LJ0814 NR:ns ## KEGG: LJ0814 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 92 32 123 123 126 72.0 3e-28 MHLIDVTNTYRDLIERQLSSTSSQYIKVYSLGNITVVYTETSTKIEIVLENHRRGIHEDE IQFVIKRLIHEDKIYNISMDQSRKIISITCDK >gi|308169535|gb|AEHR01000029.1| GENE 63 55796 - 56677 1100 293 aa, chain - ## HITS:1 COG:TM0866 KEGG:ns NR:ns ## COG: TM0866 COG0330 # Protein_GI_number: 15643629 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Thermotoga maritima # 9 234 3 228 305 135 31.0 8e-32 MEFKMILDLKIIIFIVLLVILTSGCTTIVPQNYEGLIETLGKYTKTVKAGLTFKIPFFQR VKKVSMALQPLEISRYSIITKDNAEISTSLTLNYQVTNSFKYFYNNTDSETSMVQLVRGH LRDIIGRMDLNDALGSTSAINNELSKAIGDLTDIYGISVIRINVDELLPSKQIQAAMDKQ LTADREKTATIAKAEGEAENIRLTTKANNDALIATAKAKAEAIKTEADAEAYRINKLQET LSQASEGYFRNQSIVAFTKLSAGNNNMIVMDKENIDKIGDIPAIKKIWDQDKN >gi|308169535|gb|AEHR01000029.1| GENE 64 56827 - 57357 392 176 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1837 NR:ns ## KEGG: MPTP_1837 # Name: not_defined # Def: putative ABC transporter membrane-spanning subunit # Organism: M.plutonius # Pathway: not_defined # 1 176 95 270 270 127 46.0 2e-28 MLLPIIISTVLSSSSFIGEKEHKTLEGLLYTPINTKVLVLGKALGCAAPAVTISTVSVLV YILVVNTVGWRYFKHIILPNMTWLLVTILISPLLVLLSILLVIGSSQYLKNSKSAQGVSM IIVAPIFGMLISQATGVLILGVFETVILIIVLILLDIIVFCVVMKMFNFEKFILNN >gi|308169535|gb|AEHR01000029.1| GENE 65 57237 - 57635 119 132 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1837 NR:ns ## KEGG: MPTP_1837 # Name: not_defined # Def: putative ABC transporter membrane-spanning subunit # Organism: M.plutonius # Pathway: not_defined # 5 89 6 90 270 62 37.0 5e-09 MDRHQLKVMINKEYRELVNDRGLMFSLLIIPIIFSIVLPILLFILGTRKEVSASIVGLNT FIEQFKMIKYPDYLTRGTLPFYVIFTYFFYLYLCYYQLLFLQYYLAVVLLVKKSIKLWKV CYILPSILKSLF >gi|308169535|gb|AEHR01000029.1| GENE 66 57628 - 58539 331 303 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 3 302 12 313 318 132 29 9e-30 MIIEISGINKVIGSKKVINNVSLRIDKGQVFALLGPNGAGKTTLIRIILGLLKPDSGTIR LFGEKLTDQSRPDLLLRIGVQNDGNLYENLTAKENLILWGEIYGLNSKIIKKRIDDLKKM FHLENYIDMPVGSLSKGNRQKVMLARAMFHSPEVLILDEPTTGLDPAAIDDFYQFIKKLK KAGVTIIMSTHYLYGMDGVVDSIGIISSGNLLISDKVDRLRCKIHKIHFKGKFNPKDIKE LISYGELSDCMQNEFIISVDDDNKVADIVKTLVLKGNDIYEVSQVIETVKEIYFRIIGGH SNG >gi|308169535|gb|AEHR01000029.1| GENE 67 58817 - 64006 5690 1729 aa, chain - ## HITS:1 COG:BS_amyX KEGG:ns NR:ns ## COG: BS_amyX COG1523 # Protein_GI_number: 16080045 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Bacillus subtilis # 563 1137 77 631 718 441 39.0 1e-123 MNFKINKKKITFLCTSTILGLVVNVSTVNADAVNNNIKNNNNVSLIKAPTDRSVDINQKT TKVIVHYQGDGNKWKLYTWVNNGTDKVDGKEYPWDGKDEYGNYKIIDMPGEHSKIGVLIK DSNWHKDGSNNDRQITTDVSGKAEVWYKEGSDQAQTVTPKFKKANIEINYLGSDAPASVK VGTDIEDKQADLSLKEDATKTMKQGTIELKATDNKEFNKVIINDNQQHEFTPLPGDKTDI YLVAGDKNVYYTASAAKKVIDNRKKDQQDSKLIEKLKKIAAKKEQVDFSKEQIVASTKVI VHYNGDASKWALWCWAFGKGGKQYSFDKEDDYGHYAEFNIDNSDKVGFLIKGQKDWSKDG KTKADRIINTDNSGKVEVWYATGKDEAQVVTPSFKDVKLKLHYFGDEAPQTMSVWVDDKQ ASKQTIKLDKSETNGDKVGEITITGQDLHQINISNGNQVYKVTPSPKGQITDVYLNDVDN LPHYTEYSARKDFILSMANMDSDHVVKIKTNVQLSPDLVKQLLKAQNNEITKIEAINGTD NLSDTFKVTLKNSLELGVNSRIAFCGNPKAIDVRSYVRSKDFDDKYFYANDDLGSTYSKE KTTIKLWSPIATKVTLRLYKNLDNSSQPDKTIDLTCGDKGVWSTTLTDQDYKGWAYDYQL EFADGHVTTTDDPYSTATTINGVRSVIEDVDNIKPADFIKMPAFTKPTDAIIYEAGVRDL TADKNANVKHPGQFLGLTQEGTKTDTGYPTGLDYLKKLGVTHVQFLPMYDFGSIDEAHPS NAYNWGYDPVNYNVPEGSYSSKPADPAARILEMKEMINALHKQGLRVVMDVVYNHVYGLD KQAFDKVVPGYYFKYDDNGNMVDDIGMGNAVASQRRMVRKYIVDSVKYWAKNYHIDGFRF DTMGVLDTDTMAEVYKEINKINPGTLIYGEGWEIKPNERPKEASYVHANLIPNVGFFGDN LRNAVIGESGSFGNARSGLAQGNLTDKDKNGVSHYQEDAAAFVKGFMGSQGFNKHNYLNP GQVINYSTCHDNLTLYDALKAHLPNASAAEFVKRAKLADSMIMLSQGVPLFHSGQEALRT KNGNANSYNADITVNEIDWKRVEQNKDLVSYFQKLVQLRKTCPAFRMSTYDEIKKNITPI VKGENGVFAFEIKSADSTMYVIFNVNEQANQFTSVDLTGSKILLSSDDTTVGAKTILPGL STLVIKKVSEKDKINDLIAHLEADKIEFQQLKDEIAKEEAKSQKLSVLVDQLNDKIAKME SAQTVLQQLKDEIANEKAKSQKLSILVDQLNDKIAKMEAAQASLQQLKDEIANEKAKSQK LSVLVDQLNDKIAKTEADKIAFQQLKKDIMTEIEKYIKDKKEPEIDLSKKVLDAIAHADI EKLTSYKLSDDVMKAVVEFKQGNKKLLVDMIADAIAHVNVDQLVSYKLDEATIQAIKQYQ QGNKKDLRDIIAEAIKNYANEGSTAPYKLDNDVVNQIKADLETESDVESNTPQESVETET VTEPEISPEILKDANDQENTIVGVVKIQKDSTIFDGNGSATDKVLPAGSRWKIDRITEIG GMKFYRVGTDQYILIDTAKSDGIIFTKTEKPVIGVLYINQNVDLFDKDGHNTNILLNKGT YWKIWGAKVINGKLFYRVGTQKQWVAAESVKVVDNKAIKETPVTGVVKVHVNGHPDYQVA MLDDKGNYTGQFLIQGNSYKLVAKKIINGRLCYRLGTQKQWVPAEYLLF >gi|308169535|gb|AEHR01000029.1| GENE 68 64129 - 65451 1458 440 aa, chain - ## HITS:1 COG:BH3248 KEGG:ns NR:ns ## COG: BH3248 COG0773 # Protein_GI_number: 15615810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Bacillus halodurans # 8 436 4 431 433 453 53.0 1e-127 MLDKTKEYWFIGIKGTGMASLALILHDMGYHVAGSDIEKHTFTQDPLLAKGIKITPFDAN NIKDQGQVIIKGNAFKEENVEVKACIDKKIAWQSYPDTVQEIIAQHTSIGISGSHGKTST TGLLAHVLGQLAPTSFLIGDGTGKAIKDSRFFVYEADEYRRHFLAYHPDYQIMTNVDFDH PDYFKDRDDYASAFQTAAEQTKKGLFVWGDDTRLNNIQVSIPKYTYGFNNTDDFQAYDIQ KNITGSTFKVKYHDTELGQFEIHLFGDHNILNTTAVIAVAYIEKESLDLVRAALLTYKGA KRRFSEKSYGKINIIDDYAHHPTEMKATLQAARQKYPNKILVAIFQPHTYSRTAEFADQF VEILKTADYAYVTPIFGSARENHGNISSQDLTKRIPNSEVISLDNIADLTKFKDAVLVFM GAGDITKYEVAYEALLEQNK >gi|308169535|gb|AEHR01000029.1| GENE 69 65486 - 66130 797 214 aa, chain - ## HITS:1 COG:BH3251 KEGG:ns NR:ns ## COG: BH3251 COG0073 # Protein_GI_number: 15615813 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Bacillus halodurans # 1 198 1 199 200 157 41.0 1e-38 MIISTNKKSYPDTIILILDQGEGRSTYEEKNNIVQVKDEKGKIVGYNFFKVSDFLDYDKL PNGQVKPDQKLLDILNDQLTKAGFDHKLELGKPTLVYGFVKTCEPHPDSDHLHVTTINVG DDEYQIVCGAPNIQQGQKVVVALPGTLMPNGQQIWPGELRGVKSSGMICSARELGLPHAP QKRGILVVPDTFKVGDEFEPTKCDELLACGQITL >gi|308169535|gb|AEHR01000029.1| GENE 70 66155 - 66475 364 106 aa, chain - ## HITS:1 COG:BH3253 KEGG:ns NR:ns ## COG: BH3253 COG0526 # Protein_GI_number: 15615815 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 12 102 10 100 106 97 51.0 6e-21 MKKFAEFSTSDFQREIAKGKVVLLFSASWCPDCRFLDMFLPEIVSEFTEYQFCYIDIDGA TDLAKKMNILGIPSFVAYQDGQEIGRLVSKDRKTKEEVVSFLKSLG >gi|308169535|gb|AEHR01000029.1| GENE 71 66488 - 67144 967 218 aa, chain - ## HITS:1 COG:BH3261 KEGG:ns NR:ns ## COG: BH3261 COG0220 # Protein_GI_number: 15615823 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Bacillus halodurans # 1 216 1 211 220 199 47.0 3e-51 MRLRNKPWAQKLVLEHPEALLNEPDPEIKIPWQERFADFSKPLAIEIGSGKGQFIINWAK QHPEMNFIGVELQTTAAGMILRKKLADQIYNLQIMCADAANIALYLPPKSADIIFLNFSD PWPKTRHEKRRLTYKSFLDKYKQVLKDNGHIEFKTDNQGLFEYSLQSMNNYGMLFDFVSL DLHQSNSKIYKQNIETEYEHKFAERGNRIYCVHAHFEK >gi|308169535|gb|AEHR01000029.1| GENE 72 67156 - 68352 1097 398 aa, chain - ## HITS:1 COG:BS_ecsB KEGG:ns NR:ns ## COG: BS_ecsB COG4473 # Protein_GI_number: 16078069 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Bacillus subtilis # 1 389 4 402 408 113 25.0 6e-25 MQKIANKRLNSNARKQIHYLALVFNDFFVLALLLIFGALMFWYAKSIQTWPRNLWYYSPL LALVFSISFGFGSLVTLFEYADKQFLLSLDDQLEFYLKPMLKYSMVLPTIILLLVGGIAF PFAFLRLAIHPINYLILLVDMLLLKHVQHLLQEHSLYFNDKLHYNTIAFTVIGYFLILLG IYQPLVLLAIIVVAMVYIIRQPLQGFNWNKAISKEAQRKDRIDNFYSMFTDVQDKKITIS RRKYLDFLISRKKQTANMFLFQRILLRDPEYSNLLLRMIVFALLLIFIIQDYKLNTFLAA IVIFLTIYQLLPVANIYERNMMYHVQPISRSSRAVDLAKVLQKFILLQWLLISIGLVIAS AGNLQSLLYILGLFVLTLILLYVYLPVKIGQTINKFKR >gi|308169535|gb|AEHR01000029.1| GENE 73 68336 - 69085 263 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 3 211 9 218 309 105 31 7e-22 MTLTIKKLTGGYTGITVIKDINLKIESGQVVGLIGLNGAGKSTTIKHLLGLLRMQRGEIT LNGIDLVQNPAAFKKNVAYIPETPILYPELTLKEHIELVILAYGLDHDSAYEHALHLCKL FRLENKLDWLPINFSKGMKQKVMIVAGFLAQSSLLVIDEPFTGLDPLAVANFIDLVKAAS NDGKMVLMTTHVLAEAQEIVDKFAVLNNGTIEKEGNLTEIRKFYGLKDTDSFDRLYKVLN QEHRNAKNS >gi|308169535|gb|AEHR01000029.1| GENE 74 69176 - 69328 133 50 aa, chain + ## HITS:1 COG:BH1189 KEGG:ns NR:ns ## COG: BH1189 COG0537 # Protein_GI_number: 15613752 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Bacillus halodurans # 7 48 6 47 142 70 73.0 6e-13 MSNLVQDCIFCKIIRNEIPAYTVFENDDVKAFLDISQVTKGHVLIIPKNI >gi|308169535|gb|AEHR01000029.1| GENE 75 69370 - 69612 121 80 aa, chain + ## HITS:1 COG:BH1189 KEGG:ns NR:ns ## COG: BH1189 COG0537 # Protein_GI_number: 15613752 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Bacillus halodurans # 4 79 68 142 142 65 42.0 2e-11 MQYIPKIAQAIKASDKNIKGLNVFVNNGEIAGQVVMHSHIHLVPRYDENDGVNVPHINHA AEYTPEAYQEVANTIKQHLS >gi|308169535|gb|AEHR01000029.1| GENE 76 69624 - 69935 518 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|259501418|ref|ZP_05744320.1| ## NR: gi|259501418|ref|ZP_05744320.1| hypothetical protein HMPREF0520_0928 [Lactobacillus iners DSM 13335] hypothetical protein LineA_02470 [Lactobacillus iners AB-1] hypothetical protein HMPREF9213_0698 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_0066 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0466 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9219_0971 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9218_1123 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9217_0892 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9216_0591 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9223_0136 [Lactobacillus iners ATCC 55195] conserved domain protein [Lactobacillus iners UPII 143-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] hypothetical protein HMPREF0520_0928 [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9213_0698 [Lactobacillus iners LactinV 09V1-c] hypothetical protein HMPREF9212_0066 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0466 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9216_0591 [Lactobacillus iners LEAF 2053A-b] hypothetical protein HMPREF9217_0892 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF9218_1123 [Lactobacillus iners LEAF 2062A-h1] hypothetical protein HMPREF9219_0971 [Lactobacillus iners LEAF 3008A-a] hypothetical protein HMPREF9223_0136 [Lactobacillus iners ATCC 55195] conserved domain protein [Lactobacillus iners UPII 143-D] conserved domain protein [Lactobacillus iners UPII 60-B] conserved domain protein [Lactobacillus iners SPIN 1401G] # 1 103 1 103 103 174 100.0 2e-42 MKKSTIGLIIGLSAGICWGLKKRRPNKQDEAYFKQWSTSLISNCTNTKNGISKLKKQCDA LISEQMPIANQTIQELKDSFGKYSIAIKPKIAKMENSIKQLNK >gi|308169535|gb|AEHR01000029.1| GENE 77 70026 - 70919 850 297 aa, chain + ## HITS:1 COG:lin1482 KEGG:ns NR:ns ## COG: lin1482 COG0760 # Protein_GI_number: 16800550 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 11 290 7 281 294 140 33.0 2e-33 MQFKKSLKTLLLIAAFSGVALTATGCSKTVANYKGGKITQEDFYNKVKKSPAGQAILANM IINRTLQQQYGSQVSKKKVNTAYDNARKQYGARFEMVLQQNGMTPEAYKESIQTNLLLQA ALKDIKPITKAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGKGASFKDLAKKYSTD TGTSKNAGKIEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGS FQSHKSEIITRIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVLTQYMDADLKK >gi|308169535|gb|AEHR01000029.1| GENE 78 71045 - 72022 979 325 aa, chain - ## HITS:1 COG:SP1980 KEGG:ns NR:ns ## COG: SP1980 COG3481 # Protein_GI_number: 15901803 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 19 312 12 305 308 262 44.0 5e-70 MKKKLVTYNDGESMDIIVLIKDAILRKNKKNEPYLVLIFSDGDSYIRGNLWNVTDDAVAK YVAGTFVQLNGIKEKFQNHYQIKILSMQTVGSSEVTNITDFTEKSYIDVNELVSELKDGI LEIKNPIWKSIVSFLLDKWYQKFIDFPAGKSNHHACKGGLLLHTVTMLKLAVAISKIYPQ VNHSLLYAGCILHDLGKVIELSGPVATKYTVEGNLLGHLVIIDEQIILAAKELKIKEYDE DLVLLRHMVLSHHGLPEYGAARRPAILEAELLHKIDDMDATVYAITRSLQRTEPGTFTEL ISSQDNRRFYRPIDSSDLNKINNLE >gi|308169535|gb|AEHR01000029.1| GENE 79 72024 - 74417 2527 797 aa, chain - ## HITS:1 COG:lin2324 KEGG:ns NR:ns ## COG: lin2324 COG4717 # Protein_GI_number: 16801388 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 787 1 901 908 112 22.0 3e-24 MKLIKIDVKNFGGLSDSEWKISSQLHVFYGPNEAGKSTIAAFIKQIMFGFHLKSQKSTFF ENYMPLKKVNQVGGSLTFKNENNQIITLERTYTTSDSKKGNLAVSLDNEKIPENIFWNNI KNIDGDFYTDSFIFNQDLLANVISLNQGDLLEHIYYLGAAQSSKLLLLRDKFVQSSEKLF KTNGRKPEINQILAQIKEKAETLSKQQVEFDQYSSLEKQKNDVQNEIELLNSQVKKLQQN QQNLAITKQELNNYAQYQQLKEQYQLIDFNQEDYTQAQALELTIEQLTTDIKNYESEIIA VSADNLDEQAKILAKKVEIYQIVNEADRLQNEIKQLCQELEQIQTYQPLYFKLESLSPED KVVMRSKYEQCLKTQAPKSIIKNISFGLIIFGLVGVFLKPLFYLLILSGLIIYYLDKIKT DHIRTNQIKSFEKEYGFDPQKFDLELVMSQIMQIENKRNILTEKRKNQAKILEQVADFKQ KISQFVSPTNNLTSDLEKLDEHYQQVQQKVTTQKLLNEKISAIKAKLADVKLTLQKKLSQ NKVKDIEEFKAKGNLYHQNQQIKSQMMALSANLKDRVEILSKLDINSLHTTEQSLVSELE QIQAKLRIKYDALAQLKLKLKELTNSDSLKRTQQELATANANLLDYTKEYLADLLVADWI QRGLDLASNDRFPKMLASTNQYFALLTNGRYIKVAINDQIQVVKADGTSVAVEYLSRGTA EQLYFALKLAFVEQIADEIELPILIDDAFVNFDLQRIDNIVKLVQNLSAKTQVIVFTQNL QLAKMLTDNITKLEIRN >gi|308169535|gb|AEHR01000029.1| GENE 80 74404 - 75627 1087 407 aa, chain - ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 294 4 292 411 179 36.0 1e-44 MKFLHIADVHLDSPFLGLSFLPSELFCQIKNAIQLSFEKAVNFAIDNDVDLVLLAGDTFD SIHPTPQSKIFFANQIKRLVDRQIQVVMVLGNHDYSQIDDLLLNESPYFKIIGSNEQIEQ VDFMTKSQYKYRVVGFSYQHNHITEDIIAKYPPKSTSIYTIGLAHAGMKQSSVNQNNYAP FTLNEVKNLNYDYFALGHIHLRQVLSQEPWIVYSGNLQGRHVNEKDAKGFYFGQVDEQSQ NTQLQFIDVSPIVWQTVDLTLDEPFKSTTKLCTKIQNLLADNNLRPTLFTLNIIGAELLS DAQLDMLNDKSMYEELSNNLQYHSLLVKVYYKHRDFIALNATDRALFAKAAEEILTANHT CELASSLMKKSNIVTNNLQKEEYLSDIYELARVRLEQKLRGNNDEIN >gi|308169535|gb|AEHR01000029.1| GENE 81 75637 - 75987 469 116 aa, chain - ## HITS:1 COG:no KEGG:lhv_1666 NR:ns ## KEGG: lhv_1666 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 116 1 115 116 78 40.0 1e-13 MINIYDSVNELTANFEKTEEFVALRDAINAVKANENSLKLYHHMEEIRNKFIAEQEKGNS EMSAELQKEYKEVEAQIGQDELIKNMMVHETAVYQLLNDIQKSLTDPISNLYDALK >gi|308169535|gb|AEHR01000029.1| GENE 82 76007 - 78085 1999 692 aa, chain - ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 2 669 1 677 714 583 46.0 1e-166 MITKIKEEILKLLGMLFYFLKRITHRFQLIRWLILACLTVILVVSTYYTIKVKTSNISTL KASLSTTTTIYDADNHQAGSLYAQKGSFVELSDISPNIQNAVISTEDRTFYKNPGFSIKG MVRALLMSMLHRGIVGGGSTLTQQLAKNALLTQKQTISRKIEELFFAIEINHVYSKRDIL TMYLNNAYFGNGVWGVQDASKRYFGKNASELNISEAATLAGMLKSPSYYNPIDHMQNALN RRNTVVNLMLQNKKITKSEADNAQRSVLSLKNTFRQKSGYRYPYFFDAVVDEAIHRYGLK EEDVMNKGLKIYTTLDQSYQKAIQDSFEIDGNFPATATDGVMAQGASVAVDPKTGAIRAV VGGRGRHVFRGYNRAMQMKRQPGSSLKPLAVYAPALQNGYHYDTSLSNKLQKFGKNGYEP HNVDNQYSDTIPMYQAVADSKNVPAVWLLDKIGINRGVQSMQNFGIKVPSDDKNLALALG GMSAGVSPLQMATAYSAFANDGNLPDQTYLIRKITDANGKVISQKSNDRYHRIISHRVAE EMTMMLLGVFSNGTAVSAQPAGYEVAGKTGSTEVPNSYGFGTKDQWIVGYTPDIVVATWV GFDKTDKEHYMHGISENGITRLYKSQMESLLPNSPLTKFKVKSAQQNEYASHTDDNDLKS SDSFQDKIKKGIDGLGKKVTEWYNGLKGLFKH >gi|308169535|gb|AEHR01000029.1| GENE 83 78146 - 79024 843 292 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 14 291 2 281 285 329 59 4e-89 MNTIEKQAIMNQYIYYLTISQNENNQNIDQIMRNLLIPRKWRHFLRIEKNILVNNKYLPL NFKVHTNDLITIKLNHVESLQQKYPASGNMPNIIYENDDVLVINKPAGQKTHPNLYETDT ALNDCASYLGYSPYIVHRLDMLTNGLLLVAKNPAVVPILNKQLIDKTLSRSYFAWIDATN DISDNGTINLPIGDDPLDMRKRMVRTDGLKAITHYQVVKKTANKILVKLQLETGRTHQIR VHLAAIGHPIIGDPLYNSNYQAGEKLQLTAYKLVFQKPFSFDKEEVLLDKKI >gi|308169535|gb|AEHR01000029.1| GENE 84 79111 - 80025 1138 304 aa, chain - ## HITS:1 COG:SPy1889 KEGG:ns NR:ns ## COG: SPy1889 COG0191 # Protein_GI_number: 15675705 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pyogenes M1 GAS # 4 284 3 289 293 297 54.0 2e-80 MAYLVNGNDIFKAARKNHYAVGAYNTNNLEWTRALIKGAKETRTPLLIQVSTGAAKYMGG YKTVRDLVLNEMDNMDVDVPVILNLDHGDYESAKECIALGYSSVMFDGHKLPVEENLEKT KEIVKLAHERGISVEAEIGKIGENQGADGGELASVEDAKRFVAAGVDKLACGIGNIHGVY PADWKGLNFDRLKEIADAVDVPLVLHGGSGIPQDQIKKAISLGIAKININTEFQLAFQEA TRKYIEAEKDLDKANKGYDPRKLLRAGTDAITESMKEMISWMGTRPIDGKDSVVKFDEAS LNEE >gi|308169535|gb|AEHR01000029.1| GENE 85 80121 - 81797 1971 558 aa, chain - ## HITS:1 COG:SPy2151 KEGG:ns NR:ns ## COG: SPy2151 COG0018 # Protein_GI_number: 15675893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 558 1 563 563 640 58.0 0 MDFKQEVVETIAKVVSLPKEKIEALIERPKNVKLGDYAFPTFALAKIEHKNPAVIASELA AKLVNDNFAEIVAVGPYINFAIDHAKLVSVTLKKVLADQDKYGDQDNNQGNVPIDMSSPN IAKPMSMGHLRSTVIGNSIAKILQKIGFTPIKINYLGDYGTQFGKLITAYKLWGNEEAVK KDPITNLFHYYVKFHEEAEKDPKLEDEGRAWFKKLEEGDAEAVELWQWFREVSLQEFNRI YKELGVTFDSYNGEAFFNDKMQPVVDELRAKNLLHESRGAQVVDLDDDENPALILKSDGT SLYITRDLAAALYRKKEYAFAMSLYVAGNEQSGHFKQLKQVLGKMGYDWQKDIHHIPFGL ITQNGKKLSTRKGNVVFLDNVLKDAVKLALEQIEAKNPNLANKEQVAHQVGVGAVIFHDL KNERLDNFDFNLNEVVRFEGDTGPYVQYTNARAQSILRKANVAIDDTKLALSDDWAFAVA KDIADFPAIIQKAFEKFEPSVIAKYSLNLSKKFNKYYANVRILNQDDELNARLALVQATS IVLTESLRLLGVDAPKEM >gi|308169535|gb|AEHR01000029.1| GENE 86 82059 - 83336 1161 425 aa, chain - ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 54 400 32 382 443 221 39.0 2e-57 MKLKNNNSFKNYQIIIFLVAFVCLIIFGWNVFRDHRAYVEVPTQFKTEICDNYAQDNLAL NAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREA IAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQL LDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSAGDMGILIKHLLLEFPQVLDTT RISKLNFPDGRNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRR IVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKSSSINEV RACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLIFPNIPALNNENALAFDATT SKELK >gi|308169535|gb|AEHR01000029.1| GENE 87 83320 - 85605 2735 761 aa, chain - ## HITS:1 COG:alr4773 KEGG:ns NR:ns ## COG: alr4773 COG1501 # Protein_GI_number: 17232265 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Nostoc sp. PCC 7120 # 8 743 29 761 779 535 36.0 1e-151 MDFLDNKQHLIITNNQQKLKVDIITADIVRIYTGSDVKKSAAIEGNKKIDVDYKVFEKYD QLEIKTNRLKLLVKPDLRFDLYDYDGNPLIKNYHGELKPLDRGLTPEQRKLAEAEGHLIS ADSSAGSIMFVNELAEDEQFYGLGDKTGFLNKRGYEYDDWNTDNPKPHVESFTKLYKSIP FLIGVKNSHPYGIFVDNTFKAHWDLGKESNDYYYYSSEKAELDVYLIVGDTIKNIVSNYT YLTGRTPLPQKWTLGYQQSRWGYSATQAEVERIAGLLRKHKLPCDVIHLDIDYMDGFRVF TWRNDSYTDPHDFVKKLNNMGLHVVTIIDPGVKLDKNYGIYQEGLEKGYFVKNPDGTIYV NEVWPGDSVFPDFGREEVRSWWSKNIKFLVNLGVSGIWDDMNEPASFRGEIPDNIVFHHE EIPTTHAQMHNVYGHYMDKATYEGLKKLTNKRPYVITRAAYAGTQKYATVWTGDNQSLWP HLQMMVPQLCNLGLSGFSFAGTDIGGFGADCTAELLVRWIEGAIFSPLLRNHAAMGTRSQ EPWTYPTPTLSIYRKYLKLRYQFISYLYDLFYQESKTGLPIMRPLILNYPADQKVSNMND QFMVGDQVLVSPVLQAGATAKMVYLPQGKWHDYWTGDVYDGNQYIVKDAPLDVLPIFVKD NTLLPVDHYENYVDCQKYDQITFKLYGTHAEYDHYQDNGLDFDYQLGKYNVYHVYADENA AEVTLIHSGYDRHYQKIIVELNGKKLKFAYKSDGDKYEIEK >gi|308169535|gb|AEHR01000029.1| GENE 88 85609 - 86478 342 289 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 [Vibrio cholerae MZO-2] # 5 276 224 485 490 136 35 5e-31 MMKKIEENILYETITPRKSNTHKGDYGKILLIGGNLNFGGALIMSAEGALGAGAGLICAA THSINVASLHARDPEIMYVDWRDEQNLSKLIPQMDVIVCGMGMGIDAGAQKILQLVKATV TNNQIVVLDASALDIIATDTSVIAHQAKKIIITPHQIEWQRLSNIRVQYQNDSANQTALN GLFPQKNCILVLKSNKTKIYDQFGNILENPLGNPGMATGGCGDTLSGIIGGICGQFGGEL NAVASAVYLHSLAGDIIYRKNYIVRPTAISALLPQLLKKYEYNNNDVER >gi|308169535|gb|AEHR01000029.1| GENE 89 86854 - 87135 395 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259501431|ref|ZP_05744333.1| ## NR: gi|259501431|ref|ZP_05744333.1| toxin-antitoxin system [Lactobacillus iners DSM 13335] toxin-antitoxin system [Lactobacillus iners DSM 13335] # 1 93 15 107 107 150 94.0 3e-35 MRTVNLKQWGNSMVVRLPKSVLTQAGIGNSPTVFDISVNNAKEIILRKKKKPQNLKELFK GFDYKKYWAEWNQEHSGEPKEINWGESVGREKF >gi|308169535|gb|AEHR01000029.1| GENE 90 87308 - 87691 443 127 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0554 NR:ns ## KEGG: HMPREF0868_0554 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 115 1 115 141 152 66.0 3e-36 MLNYLRAFIIALIAHWGQKDKGGHPYFFHPFRVSQGVKSLRAKVVALLHDVLEDSEKFDF SDFYFLDEEQKEAIKLLTHNKSVDYFDYIQEVKKNMIAREVKLADLNDNMNLSRLKENLR KKGIKIN >gi|308169535|gb|AEHR01000029.1| GENE 91 87675 - 87869 250 64 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0553 NR:ns ## KEGG: HMPREF0868_0553 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 63 1 63 64 85 77.0 5e-16 MADFREKVQYFYCPDYKKYVKCKDGLFYCIQKGKEIYNDFYDKILIGDIYTEDVTKEEYY AQLS >gi|308169535|gb|AEHR01000029.1| GENE 92 87886 - 88092 295 68 aa, chain - ## HITS:1 COG:no KEGG:smi_0097 NR:ns ## KEGG: smi_0097 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 3 67 4 68 69 97 69.0 2e-19 MMTTREKIIMIDGWEYIHCPVCQELVETYDICERCNWQNTGETNIDGGPNKMTLAEAKEA YAKGLKIK >gi|308169535|gb|AEHR01000029.1| GENE 93 88194 - 88829 684 211 aa, chain - ## HITS:1 COG:no KEGG:SAG0583 NR:ns ## KEGG: SAG0583 # Name: not_defined # Def: hypothetical protein # Organism: S.agalactiae # Pathway: not_defined # 1 173 119 298 406 77 24.0 5e-13 MDEVKAKNLVEVACNAERYSEVAPKFEQAMTSFARSVVADTMKKNVELHYKLGLSPKIVR KLGRGSSKKRSTSGADCEFCTERVGTFSYNKDNINKGIFSRHAHCTCTLEYFPGKGAKAE KVRAWQSMEEQENRTEYKTLSETLGRRLQVSLSDFQKMKYNNSKEYKELAERAEWLRSEF PSEKSLSGHFESHGKEFGKITKYKYQKNQPS >gi|308169535|gb|AEHR01000029.1| GENE 94 88961 - 89158 236 65 aa, chain - ## HITS:1 COG:SPy0980_1 KEGG:ns NR:ns ## COG: SPy0980_1 COG3617 # Protein_GI_number: 15674990 # Func_class: K Transcription # Function: Prophage antirepressor # Organism: Streptococcus pyogenes M1 GAS # 2 46 67 111 123 73 71.0 1e-13 MNFISEPNLYKLIFQSRKPEAEKVADWVKSEVLPAIVHKGVYMTDKKAYDITHDRSGATL ADLLQ >gi|308169535|gb|AEHR01000029.1| GENE 95 89252 - 89431 164 59 aa, chain - ## HITS:1 COG:no KEGG:LM5578_p11 NR:ns ## KEGG: LM5578_p11 # Name: not_defined # Def: phage transcriptional regulator, Cro/CI family # Organism: L.monocytogenes_08-5578 # Pathway: not_defined # 3 59 1 57 78 65 57.0 5e-10 MQITLKAARVNKGLTQREAAKYLKVNFQTISKYEIDSSKIPMKLLKDMCSLYKIPMNYI >gi|308169535|gb|AEHR01000029.1| GENE 96 89705 - 89884 160 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309810045|ref|ZP_07703891.1| ## NR: gi|309810045|ref|ZP_07703891.1| conserved domain protein [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners SPIN 2503V10-D] # 1 59 1 59 59 103 100.0 3e-21 MVYADNPYLAWEFLEHKGFEKYVKNTTYRITDKGIQYLEDLFDIQILVERRLMSEKKEQ >gi|308169535|gb|AEHR01000029.1| GENE 97 89894 - 90031 84 45 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309807050|ref|ZP_07701030.1| ## NR: gi|309807050|ref|ZP_07701030.1| hypothetical protein HMPREF9212_0111 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0489 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9217_0916 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF0522_0100 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF9212_0111 [Lactobacillus iners LactinV 03V1-b] hypothetical protein HMPREF9215_0489 [Lactobacillus iners SPIN 2503V10-D] hypothetical protein HMPREF9217_0916 [Lactobacillus iners LEAF 2052A-d] hypothetical protein HMPREF0522_0100 [Lactobacillus iners UPII 143-D] # 1 45 3 47 47 67 100.0 3e-10 MTLNFFEFHRSMDGVEDLYYHEIGQYGLKYAYLEEEVYAVKKEDA >gi|308169535|gb|AEHR01000029.1| GENE 98 90487 - 91176 642 229 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0837_10283 NR:ns ## KEGG: HMPREF0837_10283 # Name: not_defined # Def: bifunctional S24 family peptidase/transcriptional regulator # Organism: S.pneumoniae_TCH8431-19A # Pathway: not_defined # 1 228 1 240 246 126 36.0 7e-28 MALGNKEIFSQNLKYYMYKYDVDRNALCDTLGFKYMTVSDWINAKTYPRIDKIEILANYF NIKKSDLVEKQTDKQIDILPVYNQLTDIRKHKVYSYAHPQLDEQNSNLNKKRSIYVVGTS AAGEPIEYGDFDSEMIQTDVPAKADKAIHIKGDSMEPKIANNSIIFYHEQPTLEIGEIGI FEINGSAVTCKKYYVDYNSKKIILKSINPKYEPMYFAKDQVRILGKVVF >gi|308169535|gb|AEHR01000029.1| GENE 99 91560 - 92264 758 234 aa, chain - ## HITS:1 COG:lin2198 KEGG:ns NR:ns ## COG: lin2198 COG0235 # Protein_GI_number: 16801263 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 6 223 2 201 216 161 41.0 9e-40 MTEKFIFEDERRDLARIAKLFFDRNRTNVAGGNISEKIIPKEDYIYDNICIKANHPYIIM TPTMMSEAWFGDLEASQILVVDLDSGEKIDGVGRLTREINLHEEAYKANPNITVVYHSHA PKSMFWATCGLDEPNVTEITNVQVPLGKLKCLHYSPACTKELADTVREELLNRPNQIDNF LLLDSHGVLITTNDLHRAAMILEVTEWNAEIAYKQAVFNKLGLLDGYHSCGKKI >gi|308169535|gb|AEHR01000029.1| GENE 100 92541 - 94106 1842 521 aa, chain - ## HITS:1 COG:lin2200 KEGG:ns NR:ns ## COG: lin2200 COG3775 # Protein_GI_number: 16801265 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Listeria innocua # 1 439 1 439 449 395 48.0 1e-109 MQVLQSVVQWVLNLGSNVFVPFIMFIIGLAAGLKFKKSFVAALTLGVAFTGMTLVVNYMT SIITPAGKAMSKALSVSLTATDLGWTGVAAITWTAKVAFLFFPLLLVINFIMLALNWTKT LNVDMWNVWNKIFTYVLVYYMTNSMLFGFLVAGLQIIFELKAGDVFQRHIQDLTGMEAIT VPHFITLFAVILMPLNRILDFFPIFNKPFDAEHIQKKLGIWGRNDTMGFIIGLLLGFGAG YGLSKSLTLGIEAAAAMSLFPMISKLFMEALNPIAASMGKFMKNHFKDREVYIGVDWPVL AGRSEFWVTLIILVPIELIFAMILPKNNVLPFAGIINLSFGVAALILTGANLLRMIVLGI ITTPIFLYGGTYFAPMITKMAQTTHAVKVPAGTQISWSSFEGPDFRMLFGQAFSCKWWAI MGAIVWTLLFIWMYRYVSKAPLPSQRYRMNLDTEEVSDTTNTISSESVISDDYKSIDLHE LDGKDLSNKKHVVPDLGRSIEDYKSVGLHDIDGKDFSALRH >gi|308169535|gb|AEHR01000029.1| GENE 101 94125 - 94433 435 102 aa, chain - ## HITS:1 COG:no KEGG:lp_3600 NR:ns ## KEGG: lp_3600 # Name: pts36B # Def: galactitol PTS, EIIB (EC:2.7.1.69) # Organism: L.plantarum # Pathway: Galactose metabolism [PATH:lpl00052]; Phosphotransferase system (PTS) [PATH:lpl02060] # 1 101 1 101 103 117 58.0 2e-25 MASIVVACGSGVATSENVVGIIKSFLEEHNITGVKVNATDFKQLADILPQYDIYVWIAKP TQEIMDICSKNGIIDVNGVNILTGNNDEDSYKKIIWGLKRLI >gi|308169535|gb|AEHR01000029.1| GENE 102 94451 - 94873 328 140 aa, chain - ## HITS:1 COG:lin2202 KEGG:ns NR:ns ## COG: lin2202 COG1762 # Protein_GI_number: 16801267 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 1 139 14 153 155 84 34.0 7e-17 MNLKVADRHELFEQVGEKLKRIGYVKDTYVDALNEREAEFPTGLMTKYLPISLPHVDSVN VNRAFIAVVKNDKPIHMLQMGSNEDMQCEYFFFLGITDSSHQVILLQKFMQLLRDKSFVD RLICINNVDDMFEFMQEKFN >gi|308169535|gb|AEHR01000029.1| GENE 103 95085 - 95849 651 254 aa, chain + ## HITS:1 COG:glpR KEGG:ns NR:ns ## COG: glpR COG1349 # Protein_GI_number: 16131297 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1 232 1 231 252 109 30.0 4e-24 MKSSQRINKLIEILKDHPTIHITTLQKNTNTPISTLRRDLMILEQQHLIKREAGKIILLK QENIEYAWLYRENKNTLLKDKLCKTASNLIQNNNAIFIDSSTTCTKLATYLNNFSNLKII TNNLIVASQLQNHMNFSVFISGGLIKPYSQSVLDNEAIRFIHQFKTKYAFVSCSTIDLSG LYMADLLQAQVKREAIKQSEKTVALIDSSKFKNNQDFIKLCDLSDIDILITDKKITDTKF INFCKVHNIQIINS >gi|308169535|gb|AEHR01000029.1| GENE 104 95994 - 96560 715 188 aa, chain - ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 180 1 184 199 132 42.0 5e-31 MVKTLYIVRHGQTFFNFHHKTQGSCDSRLTALGIRQAKAAGDYFRKQKINFDAAYCSTQE RASDTLELITDHKMPYTRLKDFCEKDYGIFEGADEYTLPWNGDKLDAPSMERDDHVVERM VNGLKRVQEETEDGQNILIVAHGDIIAMFSKLYNSNIPHFSCCSFVKFLYDKGTYTFAGF YEPAIGVE >gi|308169535|gb|AEHR01000029.1| GENE 105 96584 - 98212 1732 542 aa, chain - ## HITS:1 COG:lin1665 KEGG:ns NR:ns ## COG: lin1665 COG2244 # Protein_GI_number: 16800733 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 15 541 5 536 537 311 35.0 3e-84 MNNNNQQTENSRISLLKGSAWMTLGSIFSRVLGAIYIIPWYAWMGTHGNVANALTAKSYN IYSLFLIISTAGIPGAVAKQVAKYNAINEYGIGRKLFKHGLFLMMIFGIVSAFVMTIASP ILAGNDSRQIPVLHSLALAVLIIPILSIMRGYFQGYNDMMPSALSQLVEQIARVAWMLFT AYLIMQVQHGSYLTAVIQSNLAAAVGAFFGIALLVLFLLKRKSNDDKLILSSNNEIEVST QSLFKEIIGQSVPFIIIDSGITFFQLMDQYTFHPIMNNLVHVSYDQIESWYALFGLNANK LIMVIVSLATAMAMTAIPLLSGAHAKKDYKDISRQIENTLELFLFFMIPASLGMAAVSVP VYTIFYGADPLGANILFLSGIAAMFLGAFTILMAILQGLSENGLAIKYLLIGIIIKSIFQ WPSIKLFQVYGPLISTIIGLIFTITFALMHLRIKYKYNYKRTKKIFLAILIISLMMFMLS LIFVVIAGKLLNPEHRINALILAAGGSIIGGLFYFYITFKLKLAQKVIGNKVERLAKKLH IC >gi|308169535|gb|AEHR01000029.1| GENE 106 98234 - 100648 3264 804 aa, chain - ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 2 803 3 802 803 1154 67.0 0 MYNHKVVEKKWHQYWSEHKTFKTGTDPNKKNYYALDMFPFPSAKGLHVGHPEGYTATDIL ARMKRAQGYNVLHPMGWDAFGLPTEQYAIKTGRDPMDVTKENIANFKNQLTQLGFSYDWD REVNTSDPAYYKWTQWVFEQMYKMGLAYEAEVPVNWSPDLGTVVANEEVIDGKTERGGFP VYRRNMRQWMLKMTAYADRLLEDLDDLDWPEPIKEMQRNWIGRSYGAQITFQVENTNLTF DVFTTRPDTLFGVSYTVLAPENELVKKITTEEHQADVEAYIKKIESKSDLERTDLNKDKT GVFTGAYAINPINGDRVPIWISDYVLASYGTGAVMAVPAHDDRDYAFASKFSLPIKEVIK GGDVTQAAFVGDGEHVASGFINGLHNEEAKNKIIEWLEEHKLGKRTVNYKLRDWDFSRQR YWGEPIPIIHWEDGETTLVPEDQLPLILPHATNIKPSGTPESPLANLTDWINVVDENGRK GKRETNTMPNWAGSSWYYLRYIDPHNTEKLGEYDLFKKWLPVNMYVGGAEHAVRHLLYAR FWHKVLYDLGVVPTKEPFQKLYNQGLILKDHEKMSKSRGNVVNPDDIVEEYGADSLRTYE MFMGPLDASIDWDDNGPASIKKFLDRVWRLMVNDLDVKAVVSDKIVEENDGQLDKVYNQT VKKVTEDFEALHFNTAISQMMVFVNEAQKATSIPRAYAEGFVQLLAPVAPHMMEEIWQIL GHDESISYVQWPSYDESKLIESVVEVMIQINGKLRGKIKVKVDTAKEELEKQALADQHVQ KFLADKEIRKIIVVPNKIINIVAK >gi|308169535|gb|AEHR01000029.1| GENE 107 100934 - 102400 1406 488 aa, chain - ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 4 486 1 487 491 346 42.0 7e-95 MNKVRHTNIKIITCAIFLTTFMTAIEGTIVSTAMPTIVSDLNGLEIMSWVVSIFLLMTAV TTPIYGKLADSFGRKPVFLFGILIFVIGSSLCGLAQNMFQLIIFRTIQGLGSGAIQPVAI TMLADLYPIDKRSKILGLNCGFWGVAAILAPLLGGFIVQHLSWHWIFYINVPIGIAALIM VQVYFIEKKVNKIVSLDYAGSAILIVFLLSLMLFLQFLDQPGTLLLTIALLVISIFSFVL FFSVEKKAKDPIIPLSIIKNKEFICHSLITLLISGVVIGFEFYIPTWMQGINGVSSSMAG FAVTPSSLLWIVGSFISGTLMFRYGTKKLFDVFLAVLLLADICLLLVPIYTPLWVFCVLA AVNGIGFGIIITVALMKSQLIVSPKDIGVATAFNTLLKFLGQTMMVSLFGVVFNTSIMTG LQKHPQLTQNMMNKIVASAKLSQLDPKFVPQLRMVLINALKSGYGVALVLIVVSFLLNHL YKEKRIKK >gi|308169535|gb|AEHR01000029.1| GENE 108 102393 - 103598 1741 401 aa, chain - ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 1 393 1 393 400 552 69.0 1e-157 MKQEKHLFTSESVSEGHPDKIADQISDAILDAILAKDPNGRVACETTVTTGLVLVVGEIS TLAYVDIQSIVRKTINEIGYNRPELGFDASNCAILVDIDEQSSDIAGGVDNSLEVRSGNK GDDLLNQIGAGDQGLMFGFAIKETPELMPLPISLAHKIMRKTADLRKNGTLPWLRPDAKA QVTVEYDKDNKPKRIDTIVVSTQTDDVVSNDEIQNSIINDVIKKVIPERYLDEKTKYLIN PSGRFVIGGPKGDSGLTGRKIIVDTYGGYARHGGGAFSGKDLTKVDRSASYAARYVAKNI VAAGLAYRCEIQLAYAIGVAHPVSIMIDTAGTGVVDESLLVQAVREIFDLRPAGIIKMLD LNRPIYKQTAAYGHFGRTDIDLPWEHTDKVSELLDYVKNHE Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:53:33 2011 Seq name: gi|308169417|gb|AEHR01000030.1| Lactobacillus iners SPIN 2503V10-D contig00156, whole genome shotgun sequence Length of sequence - 113885 bp Number of predicted genes - 119, with homology - 117 Number of transcription units - 46, operones - 28 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 249 - 1106 872 ## HMPREF0868_0084 hypothetical protein - Prom 1165 - 1224 8.9 - Term 1197 - 1240 3.0 2 2 Op 1 . - CDS 1245 - 1967 503 ## gi|309803151|ref|ZP_07697248.1| putative membrane protein 3 2 Op 2 8/0.000 - CDS 1985 - 2674 188 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 4 2 Op 3 . - CDS 2667 - 3041 368 ## COG1725 Predicted transcriptional regulators - Prom 3246 - 3305 8.8 - Term 3250 - 3295 3.8 5 3 Op 1 . - CDS 3352 - 4596 1297 ## COG2195 Di- and tripeptidases 6 3 Op 2 9/0.000 - CDS 4616 - 5413 694 ## COG0327 Uncharacterized conserved protein 7 3 Op 3 5/0.000 - CDS 5400 - 6083 761 ## COG2384 Predicted SAM-dependent methyltransferase 8 3 Op 4 31/0.000 - CDS 6144 - 7292 1505 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 9 3 Op 5 . - CDS 7304 - 9106 1367 ## COG0358 DNA primase (bacterial type) 10 3 Op 6 . - CDS 9125 - 9325 104 ## LBA1198 glycyl-tRNA synthetase subunit beta (EC:6.1.1.14) 11 3 Op 7 . - CDS 9378 - 9998 658 ## COG0751 Glycyl-tRNA synthetase, beta subunit 12 3 Op 8 19/0.000 - CDS 10070 - 11194 1328 ## COG0751 Glycyl-tRNA synthetase, beta subunit 13 3 Op 9 3/0.000 - CDS 11196 - 12101 837 ## COG0752 Glycyl-tRNA synthetase, alpha subunit - Prom 12121 - 12180 4.9 - Term 12124 - 12159 4.0 14 3 Op 10 16/0.000 - CDS 12355 - 13101 549 ## COG1381 Recombinational DNA repair protein (RecF pathway) 15 3 Op 11 2/0.111 - CDS 13105 - 14007 912 ## COG1159 GTPase 16 3 Op 12 17/0.000 - CDS 14023 - 14550 676 ## COG0319 Predicted metal-dependent hydrolase 17 3 Op 13 1/0.333 - CDS 14547 - 15509 1123 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 18 3 Op 14 . - CDS 15529 - 15972 515 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 - Prom 16000 - 16059 9.5 - Term 16020 - 16061 5.5 19 4 Tu 1 . - CDS 16069 - 16245 292 ## PROTEIN SUPPORTED gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 - Prom 16295 - 16354 13.9 + Prom 16301 - 16360 10.4 20 5 Tu 1 . + CDS 16447 - 17280 1038 ## COG1806 Uncharacterized protein conserved in bacteria + Term 17302 - 17337 1.0 - Term 17284 - 17330 11.5 21 6 Tu 1 . - CDS 17332 - 18210 731 ## COG1284 Uncharacterized conserved protein - Prom 18255 - 18314 7.9 - Term 18295 - 18329 2.4 22 7 Op 1 . - CDS 18335 - 18907 731 ## COG0431 Predicted flavoprotein - Prom 18927 - 18986 3.2 23 7 Op 2 13/0.000 - CDS 18988 - 20826 2125 ## COG0173 Aspartyl-tRNA synthetase 24 7 Op 3 . - CDS 20829 - 22115 1348 ## COG0124 Histidyl-tRNA synthetase - Prom 22301 - 22360 5.8 - Term 22122 - 22159 2.1 25 8 Op 1 7/0.000 - CDS 22363 - 22800 477 ## COG1490 D-Tyr-tRNAtyr deacylase 26 8 Op 2 1/0.333 - CDS 22800 - 24656 1747 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 27 8 Op 3 . - CDS 24719 - 25051 612 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 28 8 Op 4 . - CDS 25061 - 25441 177 ## LGAS_0856 hypothetical protein 29 8 Op 5 . - CDS 25478 - 26410 794 ## PROTEIN SUPPORTED gi|227890128|ref|ZP_04007933.1| ribosomal protein L11 methyltransferase - Prom 26442 - 26501 11.9 30 9 Tu 1 . + CDS 26425 - 26976 313 ## COG2606 Uncharacterized conserved protein + Term 26980 - 27020 5.5 - Term 26968 - 27008 4.1 31 10 Tu 1 . - CDS 27031 - 28410 1520 ## COG3610 Uncharacterized conserved protein - Prom 28435 - 28494 6.5 - Term 28485 - 28531 10.7 32 11 Op 1 32/0.000 - CDS 28533 - 29234 744 ## COG2011 ABC-type metal ion transport system, permease component 33 11 Op 2 . - CDS 29227 - 30276 1328 ## COG1135 ABC-type metal ion transport system, ATPase component - Term 30425 - 30470 0.7 34 12 Op 1 . - CDS 30657 - 32249 1533 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 35 12 Op 2 . - CDS 32297 - 33589 1462 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases 36 12 Op 3 . - CDS 33624 - 34169 621 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases - Prom 34219 - 34278 6.8 - Term 34237 - 34289 15.2 37 13 Tu 1 . - CDS 34305 - 35591 1731 ## COG0148 Enolase - Prom 35622 - 35681 6.3 38 14 Op 1 . - CDS 35736 - 36290 366 ## Ldb1292 putative membrane-associated phosphatase 39 14 Op 2 . - CDS 36272 - 36451 87 ## - Prom 36481 - 36540 8.8 - TRNA 36385 - 36471 69.6 # Ser CGA 0 0 40 15 Tu 1 . + CDS 36594 - 38852 1983 ## COG0474 Cation transport ATPase - Term 38673 - 38738 1.5 41 16 Tu 1 . - CDS 38858 - 40783 1849 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases - Prom 40823 - 40882 12.2 - Term 40809 - 40871 1.0 42 17 Op 1 12/0.000 - CDS 40912 - 42429 855 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 43 17 Op 2 . - CDS 42422 - 43375 806 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 44 17 Op 3 6/0.000 - CDS 43415 - 44563 1008 ## COG0477 Permeases of the major facilitator superfamily - Prom 44622 - 44681 8.0 - Term 44630 - 44675 8.2 45 18 Op 1 . - CDS 44693 - 46030 1357 ## COG0174 Glutamine synthetase - Prom 46069 - 46128 4.6 46 18 Op 2 . - CDS 46135 - 47070 916 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase - Prom 47103 - 47162 9.2 + Prom 47058 - 47117 9.0 47 19 Tu 1 . + CDS 47145 - 47324 287 ## LGAS_1381 hypothetical protein 48 20 Op 1 . - CDS 47379 - 47780 409 ## COG0607 Rhodanese-related sulfurtransferase 49 20 Op 2 . - CDS 47815 - 47946 113 ## gi|259500555|ref|ZP_05743457.1| conserved hypothetical protein - Prom 47967 - 48026 3.5 50 21 Op 1 4/0.000 - CDS 48034 - 48732 427 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 51 21 Op 2 . - CDS 48746 - 49297 610 ## COG0212 5-formyltetrahydrofolate cyclo-ligase - Term 49314 - 49350 2.2 52 21 Op 3 . - CDS 49354 - 49515 268 ## PROTEIN SUPPORTED gi|116095596|gb|ABJ60748.1| Ribosomal protein L33 - Prom 49756 - 49815 8.8 - TRNA 49677 - 49750 79.7 # Arg TCT 0 0 - Term 49637 - 49670 0.5 53 22 Tu 1 . - CDS 49827 - 52361 2773 ## COG0308 Aminopeptidase N - Prom 52394 - 52453 5.7 + Prom 52435 - 52494 5.6 54 23 Op 1 . + CDS 52518 - 54068 1409 ## LGAS_0712 x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) 55 23 Op 2 . + CDS 54065 - 54901 833 ## LGAS_0712 x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) + Term 54927 - 54973 9.1 - Term 54913 - 54959 6.1 56 24 Op 1 . - CDS 54975 - 56255 1146 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 57 24 Op 2 . - CDS 56269 - 56919 798 ## COG1285 Uncharacterized membrane protein 58 24 Op 3 13/0.000 - CDS 56974 - 57801 843 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 59 24 Op 4 13/0.000 - CDS 57798 - 58622 974 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 60 24 Op 5 9/0.000 - CDS 58639 - 59130 744 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 61 24 Op 6 3/0.000 - CDS 59148 - 59555 572 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 59593 - 59652 7.6 - Term 59625 - 59677 10.7 62 25 Op 1 . - CDS 59709 - 62291 1646 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain 63 25 Op 2 1/0.333 - CDS 62298 - 64400 2261 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Term 64410 - 64451 9.1 64 26 Op 1 3/0.000 - CDS 64455 - 64940 686 ## COG0782 Transcription elongation factor 65 26 Op 2 . - CDS 65013 - 66113 736 ## COG1559 Predicted periplasmic solute-binding protein 66 26 Op 3 40/0.000 - CDS 66137 - 68551 2589 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 67 26 Op 4 1/0.333 - CDS 68551 - 69600 1358 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Prom 69773 - 69832 8.7 - Term 69611 - 69654 8.1 68 27 Op 1 . - CDS 69891 - 70238 383 ## COG1733 Predicted transcriptional regulators 69 27 Op 2 . - CDS 70311 - 71072 213 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 - Prom 71202 - 71261 7.7 + Prom 70998 - 71057 9.3 70 28 Tu 1 . + CDS 71221 - 72180 853 ## COG0706 Preprotein translocase subunit YidC 71 29 Op 1 40/0.000 - CDS 72265 - 73806 1246 ## COG0642 Signal transduction histidine kinase 72 29 Op 2 1/0.333 - CDS 73784 - 74509 861 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 74547 - 74606 2.5 - Term 74524 - 74564 -0.6 73 30 Op 1 . - CDS 74625 - 75152 581 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 74 30 Op 2 . - CDS 75153 - 76313 1050 ## COG1323 Predicted nucleotidyltransferase 75 30 Op 3 6/0.000 - CDS 76323 - 76667 376 ## COG0799 Uncharacterized homolog of plant Iojap protein 76 30 Op 4 9/0.000 - CDS 76679 - 77212 574 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 77 30 Op 5 1/0.333 - CDS 77280 - 77909 662 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 78 30 Op 6 6/0.000 - CDS 77909 - 79021 965 ## COG1161 Predicted GTPases 79 30 Op 7 . - CDS 79026 - 79538 545 ## COG2179 Predicted hydrolase of the HAD superfamily - Prom 79558 - 79617 14.7 - Term 79581 - 79638 8.1 80 31 Op 1 19/0.000 - CDS 79657 - 81549 2342 ## COG1299 Phosphotransferase system, fructose-specific IIC component 81 31 Op 2 10/0.000 - CDS 81577 - 82491 1018 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 82 31 Op 3 . - CDS 82491 - 82763 230 ## COG1349 Transcriptional regulators of sugar metabolism 83 31 Op 4 . - CDS 82763 - 83242 520 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 83298 - 83357 6.9 - Term 83342 - 83376 4.5 84 32 Op 1 46/0.000 - CDS 83386 - 83742 549 ## PROTEIN SUPPORTED gi|227526538|ref|ZP_03956587.1| ribosomal protein L20 85 32 Op 2 36/0.000 - CDS 83779 - 83979 313 ## PROTEIN SUPPORTED gi|42519517|ref|NP_965447.1| 50S ribosomal protein L35 86 32 Op 3 16/0.000 - CDS 84001 - 84513 394 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 - Prom 84558 - 84617 3.8 - Term 84556 - 84597 5.0 87 32 Op 4 . - CDS 84706 - 86637 2191 ## COG0441 Threonyl-tRNA synthetase - Prom 86756 - 86815 9.3 - Term 86645 - 86684 4.1 88 33 Op 1 8/0.000 - CDS 86906 - 87805 803 ## COG1484 DNA replication protein 89 33 Op 2 6/0.000 - CDS 87822 - 89168 1343 ## COG3611 Replication initiation/membrane attachment protein 90 33 Op 3 1/0.333 - CDS 89172 - 89639 548 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 91 33 Op 4 4/0.000 - CDS 89714 - 90235 470 ## COG0237 Dephospho-CoA kinase 92 33 Op 5 4/0.000 - CDS 90232 - 91062 638 ## COG0266 Formamidopyrimidine-DNA glycosylase 93 33 Op 6 . - CDS 91075 - 91719 764 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 94 33 Op 7 . - CDS 91682 - 93748 1659 ## COG0258 5'-3' exonuclease (including N-terminal domain of PolI) 95 33 Op 8 . - CDS 93778 - 95832 1419 ## gi|259500512|ref|ZP_05743414.1| conserved hypothetical protein 96 33 Op 9 . - CDS 95877 - 96728 640 ## SPCG_1088 hypothetical protein - Prom 96765 - 96824 6.8 - Term 96805 - 96850 5.1 97 34 Op 1 . - CDS 96867 - 98438 1862 ## COG4108 Peptide chain release factor RF-3 98 34 Op 2 . - CDS 98438 - 99082 707 ## COG1253 Hemolysins and related proteins containing CBS domains 99 34 Op 3 . - CDS 99069 - 99314 339 ## LJ1601 hypothetical protein - Prom 99363 - 99422 9.3 + Prom 99432 - 99491 7.5 100 35 Tu 1 . + CDS 99576 - 99866 276 ## LGAS_1367 hypothetical protein + Term 100029 - 100070 -0.7 101 36 Op 1 . - CDS 99870 - 100361 616 ## LGAS_1368 hypothetical protein 102 36 Op 2 . - CDS 100381 - 101139 701 ## COG2137 Uncharacterized protein conserved in bacteria - Prom 101270 - 101329 8.5 + Prom 101581 - 101640 3.8 103 37 Op 1 . + CDS 101755 - 102675 889 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 104 37 Op 2 . + CDS 102707 - 102880 114 ## - Term 102725 - 102759 2.2 105 38 Op 1 . - CDS 102918 - 103544 597 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 103569 - 103628 3.5 106 38 Op 2 . - CDS 103642 - 103872 213 ## LGAS_1375 alpha/beta fold family hydrolase + Prom 103775 - 103834 6.7 107 39 Tu 1 . + CDS 103960 - 104253 305 ## gi|302191194|ref|ZP_07267448.1| hypothetical protein LineA_04222 + Term 104257 - 104299 2.1 - Term 104239 - 104284 2.6 108 40 Op 1 . - CDS 104292 - 105179 1295 ## COG1210 UDP-glucose pyrophosphorylase 109 40 Op 2 2/0.111 - CDS 105219 - 106139 731 ## COG1295 Predicted membrane protein 110 40 Op 3 . - CDS 106143 - 106928 1140 ## COG0024 Methionine aminopeptidase - Prom 107006 - 107065 11.8 + Prom 106943 - 107002 10.7 111 41 Tu 1 . + CDS 107099 - 107641 557 ## COG0716 Flavodoxins - Term 107539 - 107582 0.1 112 42 Tu 1 . - CDS 107612 - 108754 1190 ## COG0381 UDP-N-acetylglucosamine 2-epimerase - Prom 108807 - 108866 8.5 + Prom 108782 - 108841 7.9 113 43 Tu 1 . + CDS 108867 - 109046 111 ## gi|309803310|ref|ZP_07697407.1| conserved domain protein + Term 109182 - 109213 1.0 + TRNA 109098 - 109170 61.9 # Arg CCT 0 0 114 44 Op 1 . - CDS 109189 - 110424 1521 ## COG0513 Superfamily II DNA and RNA helicases 115 44 Op 2 . - CDS 110480 - 111046 626 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase - Prom 111078 - 111137 6.5 116 45 Op 1 . - CDS 111139 - 112482 1371 ## COG1253 Hemolysins and related proteins containing CBS domains 117 45 Op 2 . - CDS 112528 - 113226 632 ## LGAS_0564 hypothetical protein 118 45 Op 3 . - CDS 113230 - 113454 289 ## gi|259500494|ref|ZP_05743396.1| conserved hypothetical protein - Prom 113524 - 113583 6.7 - Term 113524 - 113585 11.7 119 46 Tu 1 . - CDS 113594 - 113809 202 ## gi|315653674|ref|ZP_07906594.1| conserved hypothetical protein Predicted protein(s) >gi|308169417|gb|AEHR01000030.1| GENE 1 249 - 1106 872 285 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0868_0084 NR:ns ## KEGG: HMPREF0868_0084 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 45 283 1 240 241 311 68.0 2e-83 MDGEVTGRIKCTLSNWTGLAYKVPRSYLEKCKDRQDLKQSGVYFLFGTNDDGDNEVYIGQ AGIRKNGEGVLFRVTEHLKDEIYFSDAVMLTTQNNSFGPTEISYLENKFTNMAIEIDRYQ VRNENDPNPGNVTEEKESELEDFIEYSKMVLGVLGYKIFVPIVNKEWKKEDKTDDNEILY LSTKTKKSEKKINAKCQRTSEGFVVLKDSMIELIDSKSLPKSIKEMRDKCKANNEIIDGK ITKNYLFNSPSYAAMFVLGMSRNGKTDWKTKGGTTLKALEENKSQ >gi|308169417|gb|AEHR01000030.1| GENE 2 1245 - 1967 503 240 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|309803151|ref|ZP_07697248.1| ## NR: gi|309803151|ref|ZP_07697248.1| putative membrane protein [Lactobacillus iners LactinV 11V1-d] putative membrane protein [Lactobacillus iners LactinV 11V1-d] # 1 240 1 240 240 303 97.0 7e-81 MFNKLFFYLFKQKAKTVLYCLLLNIICTVVIALTATHKIDYLIIVFISTSFFMNLGFLVN CSVTASKFLKKQTYRLLPMKDGYLYLANTASDFLNGLLLIAIESIIGILIVHFISFNFSK VLIGSFKLSVNTMSIVLTTISILLLSSFMLYCMLITCLLLTKICMDFLPIVLQNIRKFIS VIIYIIMLLVFSRIIEYFKSLLYNESNQSTLVFFYIIGIIIIIGINYFIFNKYHEADVNN >gi|308169417|gb|AEHR01000030.1| GENE 3 1985 - 2674 188 229 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 5 213 12 228 318 77 27 4e-13 MSEILKISNLNYKKNNKILINNINLTVNKPEIIGLLGENGAGKTTLFRLIAGLGKGYTGS IAVAGETSIDKIKENISFNDKLDAFNLYTKLKEIKDFYAKFYKDFELEKFDNIISLLDID MSKRLGELSKGKKEGFIVALSIARTVKIYLLDEPFSGIDLMSRKKILQSIIKWLPQDATV FLSDHNIEEVHQIIDRIVLIKDKTIVADETAEKIRSNGESIEEFYLKFY >gi|308169417|gb|AEHR01000030.1| GENE 4 2667 - 3041 368 124 aa, chain - ## HITS:1 COG:BS_yhcF KEGG:ns NR:ns ## COG: BS_yhcF COG1725 # Protein_GI_number: 16077971 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 2 115 4 117 121 87 35.0 6e-18 MKFEDNLPIYYQIEQQLYYDIVLGKLQPGEKMPSVRQLALDFTVNINTAQHVLSNMQDKG IIYSKRGLGSFVTDDVNLILVLKDEIISKMFSDFLSKTKKIGLSNQDTIDKLQTFVLKEG PKNE >gi|308169417|gb|AEHR01000030.1| GENE 5 3352 - 4596 1297 414 aa, chain - ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 1 406 1 408 413 424 52.0 1e-118 MEYPTLLPRFLKYVKINSRSDENSQRFPSTEIEEKFQKIILNDLKELGLQCYYNQKSGCV IATIDSNVDYDVPTFGLLAHCDTADFESNNINPQITHNYDGVSKIKLGDTDFYLDPAIFP HLKKYKGQTIISTSGDTLLGGDDKCGVSELLTFAEYLVNHPEEKHGEIKLAFTPDEEIGT GASHFDVEDFGAKFAYTVDGEGPGKLDWGTFSAAQFSLDIQGIDVHPAQAKDKMINAIKL AIDFQNQLPQNEVPEKTAGEEGFYHLLKFEGTVDHAHLEYIIRDFKRDNLEKRKELVQNI VNKINDQFDQKRVVLKMADQYYNMADELKKNMEVVDLARNAYKALGLTINEDPVRGGTDG SQLTYMGLPCPNLFAGEENMHGRYEYTVLESMWLAVDVLRKINELHLKKYQKLI >gi|308169417|gb|AEHR01000030.1| GENE 6 4616 - 5413 694 265 aa, chain - ## HITS:1 COG:SPy0931 KEGG:ns NR:ns ## COG: SPy0931 COG0327 # Protein_GI_number: 15674951 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 2 264 1 262 262 179 37.0 6e-45 MMKVKDIITILNKAFPEDIASKNDPVGLQLGSINNTVSKIMTTLDVRPEVVDEAVKNKVD LIISHHPLMFFPAKNLDFANPQNAMYAKLIANGITVYSIHTNSDKALHGSSEWQADQLEL HDIQPFCLDDDSIAIGRKGKLPEPMTAYKFAYYVKQKMNIKMVRLITANNEKLINSVAFI CGDGGKYWRQALIEGIDAFITSDIYYHVGHDIISSGLTVVDPGHYTEELFKYKIAEQLKT WLANADSSISIMVSKTNTNPFQDLF >gi|308169417|gb|AEHR01000030.1| GENE 7 5400 - 6083 761 227 aa, chain - ## HITS:1 COG:lin1490 KEGG:ns NR:ns ## COG: lin1490 COG2384 # Protein_GI_number: 16800558 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Listeria innocua # 1 223 6 234 234 154 37.0 1e-37 MEERLKQIASLVDDQARIADIGTDHAYLPIELVKDAKISFAIASDIAQGPLNNAKKDILA AGLVNQIETRLGSGLLTIHPEDKIDTIVMAGMGGTLMVNLLNASPTQYPTLILEPNVGEA NVRLWLMNNNYRILAEKIIETAGHIYEIIKAVKSTTAVPLTEMEINFGPVLMQNKNKIFY KKWSNQLLFQQKLLHNLKKAKVIDDLKVKQVTKLIMMIEEMIKDDES >gi|308169417|gb|AEHR01000030.1| GENE 8 6144 - 7292 1505 382 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 24 382 16 374 374 462 73.0 1e-130 MAENNTTNNGNQNLQASKASTTTLSQVVKNIIKEVKTSKEIKEDDFVARMVKPYQLEGRA IDQLVQEFEDNGISIVDNDGNPSNLSLKKQKDIEKAELNDMTAPSSVRMNDPVRMYLKEI GRVPLLNADQEIDLAKRIENNDDEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNM GLMKAVDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQL LQDLGREPTPEEIGAEMDMSTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATS PEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLNDGRTRTLEEVGRVFGVTRERIRQI EAKALRKLRHPSRSNQLKDFLD >gi|308169417|gb|AEHR01000030.1| GENE 9 7304 - 9106 1367 600 aa, chain - ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 5 599 4 620 626 355 34.0 2e-97 MAGHIPSNLIDEVRSAVNIVDIISQYVSLTKKGKDYVGLCPFHQEKTPSFTVSESKQFFK CFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIYKKNPIKQIYSDAT EFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQDLLE QSGLFIKNEKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETPLFTK SKLLYHFSEAKHAVNVENHLILYEGYMDVIAAYKCGIKTGVASMGTSLTSQQVYMLRRVT PNIIINYDGDDPGQHAMERAIKLFNYPNINLGIVSLPENLDPDEYVKKYGPEKYVNEVKA AITSTEFLLQRMAKKYNLFNDRDKLDFINESIALIAKNDDPIEIDIYIQKLAQKLQVSVE SLKARLLREQRKIRTAINHQKQIQALYPADEVTPKQLDNVHDSSASFTEQKRLLFLFIHN DNARLYLLTKKFIFPNESYQQLADLWLSYLEKNPNPNISGFADFIPKDLQSIIVNMELTD MPYTFSEGEIDDQIASLIKQKTILEIQRLYDQIKVAQQKNDSQLIIQLTQKIIELKRKII >gi|308169417|gb|AEHR01000030.1| GENE 10 9125 - 9325 104 66 aa, chain - ## HITS:1 COG:no KEGG:LBA1198 NR:ns ## KEGG: LBA1198 # Name: glyS # Def: glycyl-tRNA synthetase subunit beta (EC:6.1.1.14) # Organism: L.acidophilus # Pathway: Aminoacyl-tRNA biosynthesis [PATH:lac00970] # 12 66 633 687 687 71 69.0 1e-11 MLLDKSLDVKTLYSEFVQLQPVIDEYFDSNMILDKNEAVKINRLSQLKLIDKLALEFGDL SKLVIK >gi|308169417|gb|AEHR01000030.1| GENE 11 9378 - 9998 658 206 aa, chain - ## HITS:1 COG:lin1495 KEGG:ns NR:ns ## COG: lin1495 COG0751 # Protein_GI_number: 16800563 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Listeria innocua # 1 197 400 595 688 162 40.0 5e-40 MVGEFAELQGIMGTHYAELAGERKAVSQAIKESYLPSSADGDLPITKIGSLLSIADKLDT IIAFFGAGMIPNSSNDPYALRRSAYGIVRILINQSWNISIEDALKDIIALLKGKTVAKLP NDEATQAEISDFIINRVKQLLQVKKYSYDVIDTVLASNQQNVANILSIADILQENHDDSK FKKVVESLTRIANILKKADFFRSRAN >gi|308169417|gb|AEHR01000030.1| GENE 12 10070 - 11194 1328 374 aa, chain - ## HITS:1 COG:lin1495 KEGG:ns NR:ns ## COG: lin1495 COG0751 # Protein_GI_number: 16800563 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Listeria innocua # 1 368 1 368 688 388 50.0 1e-108 MTKDYLFEIGTEEMPAHVVAKSVKQLADRTGKFLKDNGLSFKNIKTFSTPRRLTILVQEL AEKQADIDEIKKGPSKKIALDKDGNWSKAAEGFVRGQNMSVDDIYFQKIKDVEYAYIHVK KEGKKATEILLGMDQIVKELAFPTKMRWGNYDLEFVRPIHWIVSLFGSEIIPVKILDIVA GRKTYGHRFLGESLVLATSDDYESALKSQFVIADANQRKNMILSQINSLCEKNNWQVKID SGLLEEVTNLVEYPTIFSGSFNEKYLNIPKEVLITSMKDNQRYFEVYDHEGTLINHFIAI RNGNSDYLDNVIAGNEKVLVARLDDAQFFYDEDKKYPLSHFVEKLSSVSFHDKIGSMAEK MLRVKLIGEYIGKK >gi|308169417|gb|AEHR01000030.1| GENE 13 11196 - 12101 837 301 aa, chain - ## HITS:1 COG:SP1475 KEGG:ns NR:ns ## COG: SP1475 COG0752 # Protein_GI_number: 15901325 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 298 1 298 305 444 69.0 1e-124 MEEKLNVQNMIFKLEQFWASKGCMIMPSYDEQKGAGTMSPYTFLRAVGPEPWAACYVEPS RRPADGRYGNNPNRLYQHHQFQVVIKPSPKEIQQYYLDSLRILGIEPLEHDIRFVEDNWA NPSMGCAGVGWEVWLDGMEVSQFTYFQVVGELDVKPTMSEITYGVERLASYIQDVNSVFD LEWADGVIYRDIFKQPEYEHSKYAFEASNQAELLKFFDTFEATAKELLNQHLIHPAYDYI LKCSHTFNLLDARGAVSVTERAGYLARIRTLAHMAAKGFMEEREKRGFPLLKHQEESKKE D >gi|308169417|gb|AEHR01000030.1| GENE 14 12355 - 13101 549 248 aa, chain - ## HITS:1 COG:BS_yqxN KEGG:ns NR:ns ## COG: BS_yqxN COG1381 # Protein_GI_number: 16079582 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Bacillus subtilis # 5 247 2 243 255 134 29.0 1e-31 MSKELIEVSGLVFKQKKYKDFDVLSKIMTAENGIFTLLIKGGLKPKSRLLPATINFSYGN YLINTNYCGLSVLRNYKVVHQLEHIYFDFKGNAYANYLLDLVDHAYADYQPLGKNYYLVF NALMKINEGIDNEIICQMVELKLLSAFGTMPEFRHCVFCDASQGIFDFSLPLGGIVCKNH FGSANTRMCLDVKTMGLIRTLALIDIQQLGQINISDNLKQQSRKFIDILYEQYLDLHLKT KKYLKEVL >gi|308169417|gb|AEHR01000030.1| GENE 15 13105 - 14007 912 300 aa, chain - ## HITS:1 COG:L0155 KEGG:ns NR:ns ## COG: L0155 COG1159 # Protein_GI_number: 15672333 # Func_class: R General function prediction only # Function: GTPase # Organism: Lactococcus lactis # 1 299 1 301 303 335 54.0 7e-92 MQNKEYKSGFVALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIF IDTPGIHKPKNNLDDFMDKSSYSALNDVEAVLFMVDPEPAGKGDMFIIDLLKNVACPVFL IINKIDTVHPDKLLPIIDSYNKLVKFAEIIPISARQGNNIDDLIKTLVKYLPQGPHYYDS EQLTDKPEYFIVAELIREQILQLTHAEVPHSAAVLVDKMSDFDKGKLQIFATIFVEKEGQ KGIIIGKNGQMLKNIGMHSRVEIEKLLGDKVNLHLWIKVHKNWRSDPVFLKKIGYNVKDL >gi|308169417|gb|AEHR01000030.1| GENE 16 14023 - 14550 676 175 aa, chain - ## HITS:1 COG:SA1399 KEGG:ns NR:ns ## COG: SA1399 COG0319 # Protein_GI_number: 15927150 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 6 161 4 152 155 100 39.0 2e-21 MTEIDISFNDEVDFFSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVDINKMHEINK NYRGKDRPTDVISFAIEDGIDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEYETGFY REFGYTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLEEYGLPLHPDQETHGKQIH >gi|308169417|gb|AEHR01000030.1| GENE 17 14547 - 15509 1123 320 aa, chain - ## HITS:1 COG:lin1504 KEGG:ns NR:ns ## COG: lin1504 COG1702 # Protein_GI_number: 16800572 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Listeria innocua # 12 319 12 319 319 374 59.0 1e-103 MISNNVVTFTPSDPKNIVNLVGINDANLKLLEETYDISIVENGNTIQLSGDESTVASAVA VLNALDKVITDGIMISATDVISASKMAEKGTLEYFGELYNQVLIRDSKKRPIRVKNMGQK RYVDAIRQYDVVFGMGPAGTGKTFLAVVMAISAFKKGEVSRIIVTRPAVEAGESLGFLPG DLKEKVDPYLRPIYDSLFTILGVETTSRLMDRGLIEVAPLAYMRGRTLDDAFVILDEAQN TTHAQMKMFLTRLGFNSKMVVNGDQTQIDLPGRARSGLLESEKILANVEQVKFIKFSFND VVRHPVVAKIVKAYEEEENR >gi|308169417|gb|AEHR01000030.1| GENE 18 15529 - 15972 515 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 147 1 147 147 202 69 5e-51 MTLIESLMKDMKAAMKAQDKETLTTIRSLKAAVMYYKIKQGHELTPEDELTVLASAIKMR KESLEEFKKGGREDLVEQTEHELAIIAKYMPKQLSETELEQVIIETISEVGASGKQDFGK VMKVLMPKIKGKADGKLASEILKKKLS >gi|308169417|gb|AEHR01000030.1| GENE 19 16069 - 16245 292 58 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 [Lactobacillus acidophilus NCFM] # 1 58 1 58 58 117 100 3e-25 MAKTIVHENESIDDALRRFKRSVSRSGTLQEYRKREFYEKPSVRRKLKSEAARKRRHY >gi|308169417|gb|AEHR01000030.1| GENE 20 16447 - 17280 1038 277 aa, chain + ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 13 268 12 266 270 226 42.0 5e-59 MCNKDKVEVNLIIISDAVGDTAFNMVQAGAVQYPNATFNYRRYPFITDTKKLENVLNEIV QYKNVLIAFTLLNEEMQLMIIKFAREHNMKHVDLLSGIIDKIHEITKEDPKHVIGAVHHM GQRYFDRISAMEFAVMYDDGKDPKGFLEADVVLLGVSRTSKTPLSLFLANRNIKVANLPL VPQTHIPDEIYKVDPKKIIGLTNDPEVLNEIRRQRMISYGLNPDTTYSNMDSINAELNSA KQLYDKLGCYVINVAHRSIEETAALIMSHLGIDNFSK >gi|308169417|gb|AEHR01000030.1| GENE 21 17332 - 18210 731 292 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 10 288 32 310 313 260 44.0 2e-69 MDHFERLSRRHNFISKLSAAFFYALAVAVALNFFWHPGKIYASGVTGFSQVLESLSSRYL PFTLTTSSMYFVLNIPLFILGWLKIGKKFTLFTIIAVILASIMMKLIAPIKLSYDPIICA IFGGVVNGVGTGIALKSGISTGGIDVLGIILRRKTGKSFGQINIFFNLIIVICAGFVFGW TRALYTALNIFINGRVIDAVYTQHQKMQVIIVTEHPTEIVEQIQEKMHRGITILHDAEGA YSHNEKTVLITIIDRYDMYDIYNIVSKNDPYAFMSMSEVSKIYGRFIEQKPV >gi|308169417|gb|AEHR01000030.1| GENE 22 18335 - 18907 731 190 aa, chain - ## HITS:1 COG:NMB1796 KEGG:ns NR:ns ## COG: NMB1796 COG0431 # Protein_GI_number: 15677635 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Neisseria meningitidis MC58 # 1 189 3 190 190 234 62.0 9e-62 MKKDVVVLVGSLREQSYARKIAKNAIDMFSDEFYAEIVEIRDLPLYDADYDDINNTNKPL PESYVQFRKKIKDAAGVLFVTSENNRTIPACLKNAVDVASKPKGDVAWTNTPVAVISHSV GAMGGYSANKNLRLALSYFTMPTVQQPEVFLGHSPELLDESGKFNNEATFNFVKKYIEQF EKLIKDNPKD >gi|308169417|gb|AEHR01000030.1| GENE 23 18988 - 20826 2125 612 aa, chain - ## HITS:1 COG:L0346 KEGG:ns NR:ns ## COG: L0346 COG0173 # Protein_GI_number: 15673947 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Lactococcus lactis # 4 586 3 588 590 653 56.0 0 MEMRTDYCGNITSKYENQNVTIYGWVQRVRKLGKLIFIDLRDREGIVQVVVNQDSGDALM DVAQKLGNEYVVEVQGKVVRRSNVNKEIKTGEVEINATNIVVLNESKNPPFEIKDDVTAA EQTRLKYRYLDLRRPSLQHSIILRSKILHAIHDYFDQEGFVYIETPTLGKSTPEGARDYL VPSRVYPGSFYALPQSPQLFKQLLMGAGFDKYYQIARCYRDEDLRGDRQPEFTQVDLETS FLDEKGVQTYTEGLLKKVMKDVMGIDIVTPIKRITWDEAMNKYGSDKPDIRYDMHLHDLS DIFKDSEFKVFADTLSNGGVIKGIAVKGGAEAYSRKKIEEKQEYIKRYHAKGIAWVKYEN GEFTGPIARFLTENQKRDLISEFELTGGELITIIADIWKVVTDSLDYLRRTFAKETGIIP QHEFKFAWVVDWPLFEYDEGDQRWIAAHHPFTMPDDKGIELLETEPHKAHARSYDIVLNG YELGGGSIRIHKREIQEKMFKALGFTKERAYEQFGFLLEALDMGFPPHAGLAIGLDRFAM LLAEKDNIRDVIAFPKNASASEPMMHSPAPVADKQLADLGINVMSEHVEANAEIEARLKK EANDLADKNRTW >gi|308169417|gb|AEHR01000030.1| GENE 24 20829 - 22115 1348 428 aa, chain - ## HITS:1 COG:SPy2157 KEGG:ns NR:ns ## COG: SPy2157 COG0124 # Protein_GI_number: 15675899 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 424 426 440 53.0 1e-123 MRVQKPKGTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDV VEKEMYDFMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYERPQA GRQREFHQIGVESFGSDNALADVETIVLAHDLLSTLGIKKYELHINSLGNEAVRTAYRQA LVDYFTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIKFVSNAPRIRDYLDDESKKNFEFI IKTLSELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNHLVEEFDG PKTPAVGFGIGEERLMLVLKAQNPELLTDSNIDFYITNIGEETITKTVEIARELRKQGLK VQYDVEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIKRLSDGESYAFNMDEIANVN DLLQKLER >gi|308169417|gb|AEHR01000030.1| GENE 25 22363 - 22800 477 145 aa, chain - ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 144 1 143 147 141 54.0 4e-34 MRVVVQRVLQAKVEIDQAEISSIDKGMLLLVGIGMSDTRDIVKKMATKISKIRIFEDNCG KTNLNIHEVNGKILSVSQFTLLADTKKGNRPSFVNAMKPPMSLDLFNYFNECLVNDGNVV ERGQFGADMQVSLINDGPMTIVLDL >gi|308169417|gb|AEHR01000030.1| GENE 26 22800 - 24656 1747 618 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 618 131 738 738 696 55.0 0 MAKDLRVIMVKLADRLHNMHTLDHLRPDKQRRIADETLDIYAPLADRLGIGTIKWELEDM SLHYLNPQQYYRIVNLMQSKRSERERYISSAISTLKANLDDLGIKYEIFGRPKHIYSIYK KMVNKHKEFSEIYDLLAVRVIVKTVRDCYAVLGAVHTKWTPMPGRFKDYIAVPKANGYQS LHTTIIGPGGKPLEIQIRTEKMHQIAEYGVAAHWAYKEGVQTAVAETPSSKKIDMFREIL ELQDETKDSHEFMNSVKTDIFSDRVYVFTPKGDVYELPKGSVPLDFGYMIHSEVGAHSVG AKVNDKIVPLDYQLKNGDVVEMLTQSSATPSRDWIKLVKTSSARNKIKRFFKSEDREKNI EKGIELVEQELQTRGLSSKTYMDKSHVNIVIEHFNYHNEEELFAAAGFGEISPASIVNRL TQDLRKREENERKRQLEAEIMNAGQQKINPVSEKHESSNGVMYIKHNNGVMIQGVSDLML RLAKCCNPVPGDEIVGYVTKGRGVTVHRADCRNINGAAKSQGRLIEVAWENVGENNTAEN FNADIEIYGFSRSKFLSDVINALNSKTKNIINISGKTDNNNMAHIYATVSVRDTAHLEEI MGRLRDIANVYEVKRSVN >gi|308169417|gb|AEHR01000030.1| GENE 27 24719 - 25051 612 110 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 110 1 110 738 136 57.0 8e-33 MSKYVEMTHDEVLAACKKYMNEEHVAFVEKAYAFAKDAHEGQFRESGQPYIIHPTQVAGT LASLGLDPDTVAAGYLHDTVEDTPVTNEDIKKEFGKDVAFIVEGVTKLKK >gi|308169417|gb|AEHR01000030.1| GENE 28 25061 - 25441 177 126 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0856 NR:ns ## KEGG: LGAS_0856 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 16 126 16 126 126 111 53.0 8e-24 MKKVLHKISEIISVEFWHKLNQKSYMSIVFLAMFCIILSLLCSLAHLRKVWLVALIFLIF NSYISFQIGCLIDFHKLSKKWLLFFPIIFALMVTIHFAKYNYFFCLIYLCFELFGLWHND LYQVRK >gi|308169417|gb|AEHR01000030.1| GENE 29 25478 - 26410 794 310 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227890128|ref|ZP_04007933.1| ribosomal protein L11 methyltransferase [Lactobacillus johnsonii ATCC 33200] # 1 310 1 315 315 310 49 2e-83 MQLNGVQIMCSSELEEPLTYFLQSDLAAKGIEVRRRSDFDDVLTANILAQDANEIPDDME LTAYFAIGIEISDIISQIKAKLLELKNYGFKTDNVEFKVIQVCDKMWQNQWEKFYHRVDF SRSLAIVPEWECPKPLNPHQIVIKMNPKQAFGTGTHITTQLMLMVMERVLLSEMSVLDVG TGSGILSIVASKFGASNVCATDISDDAIASAKKNLALNDIDNVELKQANLLTGVKGKYDL ILANMLAEILYQLIPHLSDHLARNGSVIMSGIDCEQLSRIEKLLSKNGFTVNLKIQEKRW FCILVSQKSN >gi|308169417|gb|AEHR01000030.1| GENE 30 26425 - 26976 313 183 aa, chain + ## HITS:1 COG:SP0985 KEGG:ns NR:ns ## COG: SP0985 COG2606 # Protein_GI_number: 15900860 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 21 182 3 157 160 136 45.0 2e-32 MTFFNLCFIIASGDKNVEKNKKQNLKKTLVEKILDQHKIPYSQLQFNVTQHGDVKQIDTT ILAEDEHLVYKTLVCEGNQNSPIIAVVPVTEHLSMKKLATISNNKKCELLPLKKLLSTTG YVHGANTPIGIYEKFHYPIFLDNSMKNEPLVAVSSGEVGRSVKLNPTDLATLTNATFCDL LDK >gi|308169417|gb|AEHR01000030.1| GENE 31 27031 - 28410 1520 459 aa, chain - ## HITS:1 COG:Cj1165c KEGG:ns NR:ns ## COG: Cj1165c COG3610 # Protein_GI_number: 15792489 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 319 437 5 123 164 61 34.0 3e-09 MSKKNSNMKHENCSSNKCHTLSHHHHMRIRWHEFFTSKSSTLAKEATLSERSVIVGHVGM MLLSFGTGAWRVRSAMNTMARNLNMTCSADIGLVSLEYTCVDEFGHSYTQALSLPSTGVN TAKLNKMEAFVSQFEKDHGNWTIEKIHNTLEEITKQKASYQPWQVALASGIACGGFTFLL GGGIFEVIYAFFGAMAGNYARRKMIDKRMTVLANVIVGVLVACCVYALAFYISNLFMHVS ARHLDGYIGAMLFVIPGFPFITSGLDISKVDMRSGLERMAFASMIIVVATAVGCIIALVL HLHPQDFLPLNLEPVILTILRLFASFCGVFGFSIMFNTEVKMAMLAAVFGAIANTMRLSL VDFVNWPPALAAFLGAFLAGILASIVRKKIGYPRIALTVPAIVIMVPGLYMYRAMFNLTL ASFVQGEIWSIKALLIVISLPLGLITARILTDPKWRHAG >gi|308169417|gb|AEHR01000030.1| GENE 32 28533 - 29234 744 233 aa, chain - ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 9 231 9 231 231 253 69.0 2e-67 MFNILEKYLPNVVAQGWSGDAGWQTAILQTLYMTFWSALFGGLLGLVFGLGLVLTRQKGI LENKLLFSIIDKTVSVFRAVPFIILLAFVAPFTKALVHTQIGETAALVPLTLGVFPFFAR QVQVALESVDLGKIEAAQALGATTLDLIFDVYLKESRSELIRVSTVTLISLVGLTAMAGA VGAGGLGNTAISYGYNRFNNDVTFVATILVLLLVLIIQLVGDYLAVKFNHQER >gi|308169417|gb|AEHR01000030.1| GENE 33 29227 - 30276 1328 349 aa, chain - ## HITS:1 COG:L121289 KEGG:ns NR:ns ## COG: L121289 COG1135 # Protein_GI_number: 15672304 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Lactococcus lactis # 1 343 1 362 368 301 50.0 1e-81 MAKQISLKDISVIFDGNVAVDKVSLQVEKGDIYGVIGFSGAGKSTLVRTINLLQKPTSGS ITVTNDILFEDGKQKIDAKQLQEKRRKIGMIFQHFNLLNEAKVIDNVAFALKHSQLSEKE IHTKCLHLLELVGLQDKANFYPAQLSGGQQQRVAIARALANDPDILISDEATSALDPKTT NQILDLLYELNQKLQLTIVLITHEMDAVKRIANKVAVMEDGKLIENGNLLDVFLHPKRKL TKQFVGGALEVQHILNTYSLNEIAPNDQLYQLVYGIDDVTKSVVADLDEKVGTKASILYG NVEVLGGKLIGTLAILLKLDANKEQEALQFLRDRNVIVTKLDKDVLRNV >gi|308169417|gb|AEHR01000030.1| GENE 34 30657 - 32249 1533 530 aa, chain - ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 2 530 12 538 540 674 60.0 0 MAGHTLYEDVNLKFTPGNCYGIIGANGAGKSTFLKLLEGKIEPTTGSITIGANERISSLN QDHFAFEAFTVMETVIQGHKQLYDVMKQKDALYAKADFSDADGVLAAELETKFAELDGWN AEADSAKLLQSLGVAEELHQTMMSELPESVKVKVLLAQALFGNPDILLLDEPTNGLDVHT IEWLENFLANYENIVMVVSHDRHFLNQVCTQMCDVDRGKIQLYVGNYDFWYESSKLATEL ANNQNAKKEEKIKELQTFIARFSANASKSKQATSRKKQLEKITLDDIKPSSRKYPYIKFD MHRELGNDLVKVENVSYSVDGRKILDNVTFSVRPGDKVAFISRNTVAISILLQIIAGKLE PDTGSVTWGQTTAFNYLSRDLNANFNDSELTILDWLRQYASKEQEDNTFLRGFLGRMLFS GDEIDKKIKVLSGGEKVRCQLSRLMLQPSNVLILDDPTNHLDLESITALNEALKAYPGSI LFTSHDHEFIQTIANHIVEVGSKGIVSRQDITYDEFIDHEIVQQQIKDIY >gi|308169417|gb|AEHR01000030.1| GENE 35 32297 - 33589 1462 430 aa, chain - ## HITS:1 COG:BS_amyX KEGG:ns NR:ns ## COG: BS_amyX COG1523 # Protein_GI_number: 16080045 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Bacillus subtilis # 1 406 271 689 718 355 43.0 1e-97 MPIYDFGSIDESIPDAYNWGYDPANYNVPEGSFASDPADPASRIMEMKQMIKGLHDAGLR VSMDVVYNHVYIRRMHALEKTVPGYFFQYRDGKPTNGSACRNDVASERLMCRKYIYDSVM YWAKEYKLDGFRFDLMGILDVDTMNQIKRGLNEIDPSILVYGEGWDMRQTNHEIGAGQYN ANKLPGISFFSDDFRDSIRGSEFAGVEPGLVFDMDHYGYYRASRMFIAGFLGGKFYSSLS NHPYQSPMQTINYVECHDNYTLFDKLKLLMPNIDEKEIHRRAKLALAMAILAEGIPFINS GQEAFRTKQGDPNSYSSGDQINKIDWNRMSKNKDDVLYLSELLKIRKKYDVFRLDDYSEI EKRIKLLIAGQNGLFAFSYDQNIIVIFNVFNDQKTNLGLDMTGFKKIFSSDADQDCHTVA PLSVNVFVRK >gi|308169417|gb|AEHR01000030.1| GENE 36 33624 - 34169 621 181 aa, chain - ## HITS:1 COG:BS_amyX KEGG:ns NR:ns ## COG: BS_amyX COG1523 # Protein_GI_number: 16080045 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Bacillus subtilis # 7 180 91 257 718 116 37.0 2e-26 MLSIDEIQSPEFDMKYFYDVDDLGATFYDDKIKLRLWAPTAEKVCVNLFANYQSDAPKLA SLEMAKSEKGTWLIFLDKKYYGKAYTYCLTFDNFTTETVDPYIQMVTINGKYGVLSDANK IKPENFDRMSPFSKATDAIIYETSVRDFTIDVNSGVKNKGKFLGMIEADTETPLGLSSGL D >gi|308169417|gb|AEHR01000030.1| GENE 37 34305 - 35591 1731 428 aa, chain - ## HITS:1 COG:L0008 KEGG:ns NR:ns ## COG: L0008 COG0148 # Protein_GI_number: 15672258 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Lactococcus lactis # 6 422 5 421 422 505 62.0 1e-143 MLKSVIENVHGREIFDSRGNPTVEAQVTLSNGVVAIAEVPSGASTGENEAVELRDGDSRL GGKGVMKAVNNINTEINAALKGMDPYNQALIDQTMIDLDGTPNKGRLGANAILGVSMAVA RAAALDCHQPLYRYLGGTDLEMPQTFHNVINGGEHADNGIDIQEFMITPVKKTSFRDGFE KIVNTYHTLKKVLEEMGYETGLGDEGGFAPNMKNSEEALKALHEAIIRAGYKPGEDIAIA CDCAASYFYNKEDGKYHLEGKVLDDEELAEYYDKLLAEFPELISMEDPYDENDVEGMVKF TQTHKDRLQIVLDDFICTNPKLLNKAIHEGAGNASLIKLNQIGSVTETLETVRLSRKNGY NTMISHRSGETGDTFIADFAVAVNGGQLKTGAPARSERVEKYNQLLRIEEELGAGERLAF FPDNVDLD >gi|308169417|gb|AEHR01000030.1| GENE 38 35736 - 36290 366 184 aa, chain - ## HITS:1 COG:no KEGG:Ldb1292 NR:ns ## KEGG: Ldb1292 # Name: not_defined # Def: putative membrane-associated phosphatase # Organism: L.delbrueckii # Pathway: not_defined # 30 184 38 192 195 81 31.0 2e-14 MELFILILVFLHLVMLNKMQNMDDVTKMTKDVTVKFKLLWKIITYVFSPIDIMLFCIFVS TILWINGNSKLACWFLLSLILTDVVGIALKITIKQKRPIDSICHRKGYSFPSGHVLSAMT LIYLLIFTFNLEKNIILVCIFITILLGIISSRIFLRQHHLLDVIASLVLSRICFLIAIFI WRIL >gi|308169417|gb|AEHR01000030.1| GENE 39 36272 - 36451 87 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHRTRNPANRFYRRAGSNPVLTLRFEEVIILVLTSFSFLLTLHKKRLCVYGILSWNYLY >gi|308169417|gb|AEHR01000030.1| GENE 40 36594 - 38852 1983 752 aa, chain + ## HITS:1 COG:Ta1045 KEGG:ns NR:ns ## COG: Ta1045 COG0474 # Protein_GI_number: 16082076 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Thermoplasma acidophilum # 5 744 21 770 780 399 32.0 1e-110 MEIKGLTQKEADKRLNIDGLNDVPDPKYNFWQAFVSKLWNISAWILEAALILECFLGKWI QSFFVLLMLLFAAFNGATQKKKSRKVLNMIAHKLNPLVIVKRDNIWKQIDAKFLVIGDLI SLKKGDILGADAKLVQGNLQVDQSAISGESNLIAKKETETIFGGSIVIKGEALATIMATG KNSRNGKTINLINTSAAPGHLQKLLTAIIYYLCLLDGILTLILIFFAIIHGKNILDMLPF LAMMFIASIPVAMPSTFALSNSFEATKLSQEGVLTADLTGIQDAANLNLLLLDKTGTITE NKTSVFKWHNLCQKADKEVLSYVSATLDEKNSGIIDDAIFTFLKQKNIKLIKADKYISFT SDKGYSQAQVGNLDLKLGSFKQLSQLDTTSIEKIGQINFENGRSVAFLINNKLAGIFILK DTIRPDAITTLQEIKNRGIKAIMLTGDNQKTAQSIAAQVGLQGEVISINNFTENLNIHEL AGIADVLPEDKLFIVKLLQQKGFIVGMTGDGVNDAPALKQAEVGIAMHNATDIAKKSSKM VLLQDGLSPIIKILDAGHRVYHRMTTWSLTKLSRTAELTMLLTIGFICLNYIPMALNAMV IYTIMNNMVTMMIGTDNTYVSYHPENWDILKLAKRAFSLASGFMLSGLALLYFCTQKQIA PAKIGAIIYIYLVFSAMLLVLITRSKTYFWKSLPSKYVYITQLINIVITLIITTIGLGIQ QLAVSEIGLAILFSLLAAIIIDVIYKKITVKN >gi|308169417|gb|AEHR01000030.1| GENE 41 38858 - 40783 1849 641 aa, chain - ## HITS:1 COG:BS_amyX KEGG:ns NR:ns ## COG: BS_amyX COG1523 # Protein_GI_number: 16080045 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Bacillus subtilis # 12 579 91 641 718 417 38.0 1e-116 MEKHVLKKFYGLTSPEFDRENYYGGSDLGLSFEKDKVIFKIWSPIADTVTVRLYHDLNNN SISDHEITLDKEKAGVWTCMISSKYIGWAYDYKFTFCDGTVTYANDPYAVAATINGVRSV IIDIAKIEVKDLVKLPSFTNPTDAIIYETSVRDITADKNGGFKYPGLFLGLSEKNTHTAQ GYATGLSYLKSLGITHVQLLPMFDFGSLDEADPNHGYNWGYDPINYNVPEGTYSTDPADP VCRIKEMKYMVNELHRAGIRVVMDVVYNHVFDIHKQAFEQVVPGYYFKHDEKGNMIDDIG MGNAIASQRLMVRKYIVDSVIFWIKNYHIDGFRFDTMGVLDVDTMNLVVEEAHKIDPGIL IYGEGWNIKPIERPLESGHDHARLMPNVGFFGENLRNAVIGESGEYADYRPGLVQGNLAE VGASGKKYYEQDVCEFVKGFMGSNGFHTYIAPHQLINYSTCHDNFTLYDALIAHLPNASR PEIIKRAEMSLAMILLAEGVPLIHSGQECLRTKNGNVNSYNAPIEENKIDWLRVEQNQDL IEFFKKLVNIRKKYSIFRIDDYQEISRIVRPYVLKQNGIFAFEYTMPTCKLYVLFNIKNE TQLFNQIDLTGAKVILSNDNDLLLSQHSTLGALSTSIVILK >gi|308169417|gb|AEHR01000030.1| GENE 42 40912 - 42429 855 505 aa, chain - ## HITS:1 COG:SP1860_2 KEGG:ns NR:ns ## COG: SP1860_2 COG1732 # Protein_GI_number: 15901688 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 236 505 26 297 299 166 35.0 9e-41 MIDNIFNILNLKQTSIVLNFLMDELTILFVSFVVSSLLALLLHKCARLTKVINWLFKLIL VVPIFLLIAWIFIKHNIVLTIYLYWIIGSAFATCVLFPVINNAFTKINPELKTTAVALGL SKKKIFFKIELPLVIADIIGGLKKIVFYSSIWLLIINLISIRNCSQISLIHFSKIQCNIA IVLTLSVLLLNFIFCLVKLFNAKFQWMFLIIVLFFGIVSLGAYSLNSIKIGSNSAKSEQI IIASKDDSQFDIIANMYKILLEKNKKYHVIFSRRKDDRQILKELRKGNIDIYPEETRKVF SLIDNSDKKFANIDELYRYTRDILYKQDLIYMTPMAYHNNYVLIADKEFAKQNKITKISD LQKYKSKLVVEMFKDFADSSNGYEGLKNVYKLDFPKMSVTTSDQCYEKLKKRQVNLIAAT SNDPEIKRNNLLILNDDKYYFVPYQVAPIITKKFAKKHHQVVKIIEKLAGKITDDEIIQL ETQVKLEHKNAAKVAKAFLQRNKLI >gi|308169417|gb|AEHR01000030.1| GENE 43 42422 - 43375 806 317 aa, chain - ## HITS:1 COG:L64737 KEGG:ns NR:ns ## COG: L64737 COG1125 # Protein_GI_number: 15672829 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Lactococcus lactis # 1 257 1 260 305 151 35.0 1e-36 MIEYQNVSKKINRKTSLKNGSLNINNGDLLVIVGSNDSCKKIIIRLLNRLIEADEGDIWF NHKKITDYTIKDLRSKISYVSTQANLFNNLNIYQNLTISLDKNISGQDKQTIANTLLELI DMDNQCLNMKPHELTYFEQKKISLARAFAINPQVVLLDDSFDEMDKISQIKLHELLVRLK KHFHTTILMTTDDIADALKLASSIVIVNGSKIEQVGTARDISQHPANLFVKQLLENNHIG VSFDLETLLKSELGVNPRYYPKTDMLVRYHVYNFKDLVKDCSNHPDSLFIAETDFGEFLI EPKRVWNFLLKRLSTND >gi|308169417|gb|AEHR01000030.1| GENE 44 43415 - 44563 1008 382 aa, chain - ## HITS:1 COG:L157472 KEGG:ns NR:ns ## COG: L157472 COG0477 # Protein_GI_number: 15672136 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 4 368 11 381 393 101 24.0 3e-21 MDVILVMAASFLFMFSVMFVTPLINGYALSLGADSILAGIITGSMSIVSIFLRPIAGNLV DLYSKYCLSLIGGILILIGVSGYWLVNTSGLLILFRLINGTGFVLATICMTTWLAFLVPR RFVGEAMGFYGLMNALAMAVAPLIAINSYKVIGYRYSMMIASLAAVIMLIMIKFVKNHAI PQNKLSLKNIKHIRIIQKDTIPVALLMLFFSIPYFATQADLVEYVAMRKLSVSVGYFFLI YALSLLIIRIWLKRFFDTIAFGFWFWLSLIAMIIFLISMAFMKNNFIMLIAAVALSIGYG VIYSINQTTALLLSPLDQQGLASSTVYLGLDLGMASAPILGGIIASTIPHFYFYPIMLIM VPFVLVIYFIYRKKLNGAIQNH >gi|308169417|gb|AEHR01000030.1| GENE 45 44693 - 46030 1357 445 aa, chain - ## HITS:1 COG:SA1150 KEGG:ns NR:ns ## COG: SA1150 COG0174 # Protein_GI_number: 15926892 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Staphylococcus aureus N315 # 2 443 3 443 446 538 57.0 1e-152 MKRILTADDIKMSVKDNDVCFLRLAFTDINGTMKNVEVPTSQLDKVLANEIRFDGSSIDG FVRIEESDMVLYPDLSTWMVLPWQDGTSGRIGRLTCSVHKVDGTPFEGDPRNNLKRILNE MKSMGYTDFEIGFEAEFHLFKLDENGGWTTNVCDHASYFDMTDSDEGAKCRREIVETLEG MDFEVEAAHHEVGNGQQEIDFKFDDALTTADRVQTFKMVVRTVAKKHGLCATFMAKPLEG EAGNGMHTNMSIFKDKRNIFYDANGKYGLSNEALYFLNGILEHARAITAIGNPTVNSYKR LIPGYEAPVYIAWANKNRSPLVRIPAAEEVTTRLELRSADPTANPYLLLAATLKAGLNGI KEAKMPMEPVTSNVFEMSEEKRKELGIKPLPSTLHNAIKAFKADKLIQEALGEHLTKSFI DSKELEWARYTQSVSEWERQRYINY >gi|308169417|gb|AEHR01000030.1| GENE 46 46135 - 47070 916 311 aa, chain - ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 2 307 3 308 314 228 40.0 1e-59 MQKIIVIVGPTGIGKTELAIKLAQKLNAEIISGDSMQIYQEVNIGTAKPTFAERAAVKHY LVDQQSIFTEYSVKEFVSQASKAIDEITAKGKIPLVVGGTGFYINALINKLQLGERESYN DSVDSKWLELLKSEGEHALWQKLNEKDPITATKIPYQNHRRVLRALSVISRTGKLFSDQQ VDIEPRYDALIIGLNSDRQQVYERINNRIDKMMASGLLTEAEMIYHNLDKCHQVVQAIGY KEFFPYFKHEADLSYCVDKLKQASRKYAKRQITYFRHQLCVKWLDPLKDDHILDDMLILS NNFIHKKSKKY >gi|308169417|gb|AEHR01000030.1| GENE 47 47145 - 47324 287 59 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1381 NR:ns ## KEGG: LGAS_1381 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 58 17 74 75 76 68.0 3e-13 MSKKFGTGVATGILTTLGALAIGLFTYKKKVLDPEDKEDSRIADNRRKANRKSFSAHQS >gi|308169417|gb|AEHR01000030.1| GENE 48 47379 - 47780 409 133 aa, chain - ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 37 130 32 125 126 89 46.0 2e-18 MDKVLIILNVLLTVIILALAVNWLWLRWQAKRLGGKLTQKQFEEGKRKAQIIDLRTKDAF KNKHILGARSLPFSMIKYQYSEIRSDLPVYLYSDSLMINIRVAKFLNKKGYHKVYWLEDA FAKWEGQTKTSKY >gi|308169417|gb|AEHR01000030.1| GENE 49 47815 - 47946 113 43 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500555|ref|ZP_05743457.1| ## NR: gi|259500555|ref|ZP_05743457.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_04477 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0847 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0752 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0422 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0847 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0752 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0422 [Lactobacillus iners SPIN 1401G] # 1 43 30 72 72 76 100.0 7e-13 MALELDNLHKAGVISNKNYMTAKLILNHEHEIEVAKESGQCKD >gi|308169417|gb|AEHR01000030.1| GENE 50 48034 - 48732 427 232 aa, chain - ## HITS:1 COG:lin1374_1 KEGG:ns NR:ns ## COG: lin1374_1 COG0705 # Protein_GI_number: 16800442 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Listeria innocua # 7 183 173 345 345 100 34.0 3e-21 MIHIGIKRKYKKYTSRIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKL QFWRLFTAQFIHAGFFHVICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALG QDNVISCGASTAVFGLMGSVLALYFLNNDNIIAIIIGRQAFLLLICNIVVDFFMPSVDII GHIGGTITGFLLTIILGSIFFKDAPSKIRILFCVIFIIYLVYCLRQGMVINL >gi|308169417|gb|AEHR01000030.1| GENE 51 48746 - 49297 610 183 aa, chain - ## HITS:1 COG:BS_yqgN KEGG:ns NR:ns ## COG: BS_yqgN COG0212 # Protein_GI_number: 16079545 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Bacillus subtilis # 5 181 2 178 187 110 35.0 1e-24 MLINKNEFRKQQLAKLRGFSQSYQKLQEDQFLQEKLIATSDFKNSVSIGITISTMDEIDT KLIINTAWQFNKQVFIPRCLPGRRMEFTQITDYNRLTKNKFGILENWQSQSTINNEPDII IVPGLAFKSDGYRLGFGGGYYDRFLAEHDLMSISMVGSLRLFEQSCWPINDYDIPVKKLI TIE >gi|308169417|gb|AEHR01000030.1| GENE 52 49354 - 49515 268 53 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116095596|gb|ABJ60748.1| Ribosomal protein L33 [Lactobacillus gasseri ATCC 33323] # 1 53 1 53 53 107 92 2e-22 MVEQMAEHIILECTECGDRSYLSEKNKRKHPERLSLKKYCPVERKTTLHRETK >gi|308169417|gb|AEHR01000030.1| GENE 53 49827 - 52361 2773 844 aa, chain - ## HITS:1 COG:L102360 KEGG:ns NR:ns ## COG: L102360 COG0308 # Protein_GI_number: 15672287 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Lactococcus lactis # 5 842 4 842 846 832 50.0 0 MGKNKRLFDVFVPEHYDIFLDVNREHKTISGVSTITGEAKANQIQLNQKYLTVEDVTVDG KKVEFNYNDKDELITISSDKIGKIKLVVTYNAKLTDTMMGIYPSYYEVDGVKKQLVGTQF ETTFARQAFPCVDEPEAKATFNLAVKYDEKDGETIISNEPEFKCENGIHYFKETVRMSTY LVAFVFGDMQKKLTKTKSGVEIGVFATKAHKANELDFALDIAKRSIEFYEDFYGTPYPLE HSYQVALPDFSAGAMENWGCVTYREAYLLVDPDNTSLDIKQLVATVIAHELAHQWFGDLV TMKWWDNLWLNESFANMMEYVAVDALEPSWKIWETFQTMETAAALRRDATDGVQSVHIMV NDPAEIDSIFDSAIVYAKGARLLVMVRALLGDDALRQGLKNYFAEYKYGNAQGQDLWEYL GQASGLNIGDIMDSWLEQPGYPVVRAGIEDGNLVLSQKQFFIGTGEDQGRLWQIPLNSNY LQVPKIMKDEKMIIGNYEELRAKNGVAFRLNVGNNSHFIVKYDQQLLDDILSEMDHLNNI DKLQLLQDLGLLAESQEISYADVLPLLVKEAESTSNIVNSKLYGTLAKIKIFATPDSAEE TSIKQFSKQLSESNSERLGVEPHAEESIDDNLTRPLILSASLYGDNPVIIAKLHELYLAN KDKLADLNSDIRYFVLLNEIKNLENEDLFKMLFDKYAKEVDQNYKRDICLALTSVKNPDL LQLLIDKFKDASVIKPQDLLRWVAGILRNNHGQQKAWDWMRQEWQWLDKTVGGDMSFTAY ISVVASTFDTPERLAEFKEFFDPKINVSGLTREIKMDTLVIENKVALIAKDKVAVNKAIK ALLG >gi|308169417|gb|AEHR01000030.1| GENE 54 52518 - 54068 1409 516 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0712 NR:ns ## KEGG: LGAS_0712 # Name: not_defined # Def: x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) # Organism: L.gasseri # Pathway: not_defined # 1 498 1 498 794 765 74.0 0 MKFNQYAYVEIDPKKQIEELKNINFLPVNFEKYNFSDLLGTLFKNLLAEAKTPEAKTAKL SEFAINENETLTTFLAQNPQAITKNEFYNVALQLLGYHVIYDYDLNNPIDCLNKHALHYI DKKEFTLNELPEVFYRLLNTRSANGQILIDVMAAKGYFTQFWGKNEFLFFNGKSLPVFDT SKVIREVVYVESDLDTDEDGQPDLLQTTIFRPDESNIIPVPALYTASPYFGGIIANEAKN HNVDENLEDATLSNYPKYVAKPHVFANKPSSDNNQATEEAIHKSSYALNEYLLARGFASV FAGAIGTRGSDGLRITGAPEETESAKAIIEWLHGDRIAYTDRNRTSEVKADWCNHKIGMT GRSYLGTLQIAIATTGVAGLKTVVSEAAISSWYDYYREHGLVVAPEACQGEDLDLLAETC QSNLWDAGNYLKIKDKYEAMQQDLLKKSERNTGQYSDFWDARNYRHRADNIKCSWISVHG LNDWNVKPKNVYKIWQKVKIYQSNITSSYTKGHITI >gi|308169417|gb|AEHR01000030.1| GENE 55 54065 - 54901 833 278 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0712 NR:ns ## KEGG: LGAS_0712 # Name: not_defined # Def: x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) # Organism: L.gasseri # Pathway: not_defined # 1 277 517 793 794 361 61.0 1e-98 MNNLVSIDFTDLMNLWFCHELLNLQNNAYNQWPTVMIQDNLQADLWHQEKDWNNVDGQTS TYFLHQDGELQKAPDTQAKEQKFTDQGGKIFKQAKISEQQWQNEFIAGNERWLDQQLRFT TDEFIHTTTITGRPTIKLSASCSKTTGQLSVALVEIGTRKRLTDTPSFFRDQNQEFGYRF GSQMLQEFTLTKATPAKLITKAHINMQNYADLKKASQIKENTMYDFEFQLQPTYYRIPAG SQLALIIYSTDQAMTKRPLESEEYKIDLTKCSISFQQK >gi|308169417|gb|AEHR01000030.1| GENE 56 54975 - 56255 1146 426 aa, chain - ## HITS:1 COG:lin2555 KEGG:ns NR:ns ## COG: lin2555 COG1508 # Protein_GI_number: 16801617 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Listeria innocua # 18 420 18 445 447 175 29.0 2e-43 MKYKNGLSLRLKESLITRLFLSPKLKQDLDILSYNTEDLLKVLHDIAETNPFIDLKYTNA NTTTLDWVQDPSQDSLVEYLIKQIQLSAWSNNDKKLVTFLIYKLDNNGYLRFTCKQLANE IEYSEADIQNAKNLLHELSPLGVGAYDLNECLLIQAKKLLHFNPIALAILEKHLLERLAD TSSWNSLPWKKEKILEALKELRKLEPTPGAKFDNFTNIQYLIPDLIFEIDNGHVLVKDSK FNLPEVVFNEVEYTNLKGSCATNEVEYFNAQKKQFMDLQLSLERRQKTLIRLGEYLAKYQ LAYLKTMDKKQLKALNMNNVAQSLGLSVSTISRAVKDKYFECNNRIISLKIMFMKSFKNN ITAMKVTDTIERLINEEDKSHPLSDQDICDQLLLQGINISRRAVTKYRTKMNIQNSYWRK LNDCNK >gi|308169417|gb|AEHR01000030.1| GENE 57 56269 - 56919 798 216 aa, chain - ## HITS:1 COG:FN0215 KEGG:ns NR:ns ## COG: FN0215 COG1285 # Protein_GI_number: 19703560 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Fusobacterium nucleatum # 1 169 28 205 244 123 39.0 3e-28 MIAGVIGFDREHKNRPAGIKTHALVCAGACLIALLQKQIGFDALQLAILRPKLSGILRAD EARLIAQVVSGIGFLGAGTILVNHRVVLGLTTAASLWAVAGIGLSFGMGYYNIGLVGALF VILVLVFSKKIIRVNTIKKLEIKYRHKFETKEFIQKYFENKGIIVSDVNFKVTQDADKII YVNVYEIEIPRDLNYASIIEDISMNKNIMCIQMISI >gi|308169417|gb|AEHR01000030.1| GENE 58 56974 - 57801 843 275 aa, chain - ## HITS:1 COG:SPy1060 KEGG:ns NR:ns ## COG: SPy1060 COG3716 # Protein_GI_number: 15675052 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pyogenes M1 GAS # 1 263 1 263 275 286 54.0 3e-77 MRFTKNVTPEDRKMLNRIFLRSFTVFASRAGATKTHAPGFMYSIMPALDRYFKDNKAEHR AAMMRHTTWYNITQNVGTFVMGLVASMEKKKAENSKFDAESTVAIKTSLMGPLSGIGDSI FWGVLRVIAAGIGISLASQGSIFGPILFLLIYNIPSILTRYYLTYAGFTLGDTFIQDMYE SGSMKLLNKAASTLGLMMIGCMTATMVKFQTKLSIPIKGGKAILMQSYLDQLWKGLVPLA LTLLCYWLLSKKVNVNWILLGILVLSLVLGLVGVV >gi|308169417|gb|AEHR01000030.1| GENE 59 57798 - 58622 974 274 aa, chain - ## HITS:1 COG:SPy1059 KEGG:ns NR:ns ## COG: SPy1059 COG3715 # Protein_GI_number: 15675051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 7 274 1 263 263 243 53.0 2e-64 MLQIALLASLCVFICFGGNWLWGQTMIERPLVVGAVAGLVFGDLQTGILIGASLEAIFMG AVDIGGALSAEPVTATVLATTFAITLNVNMKAALALAVPIGVFAAFISMFLKNVVMNIFA PLVDKVAANDDSKGLTKLHFGMWFINYFVFSLVTFFSVLAGAQPVQHLVKQIPANLMAGL AATGGLLPAVGFAILLRMLWSKNLSPFYFLGFILAAYVNLPSVAIAAIGIIIVILQWNRD KQIMDLENKQKNINTTHVAETLDNKDQEEEEFFS >gi|308169417|gb|AEHR01000030.1| GENE 60 58639 - 59130 744 163 aa, chain - ## HITS:1 COG:SPy1058 KEGG:ns NR:ns ## COG: SPy1058 COG3444 # Protein_GI_number: 15675050 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 1 160 1 162 163 160 55.0 1e-39 MIAQLRVDDRLIHGQVALVWTKELDTPGIVVANDNAAKDAMVQMTLKMATPTGKKLLIRS VQDAIAVFNNPKAANMRIFALTNCVEDALEIAKHVSNIEGINVANVGRFANGQGKVTQLT STLMLSDEEMVALKQLSELDIPVFTQVVPSNARTSIASLLAEK >gi|308169417|gb|AEHR01000030.1| GENE 61 59148 - 59555 572 135 aa, chain - ## HITS:1 COG:SPy1057 KEGG:ns NR:ns ## COG: SPy1057 COG2893 # Protein_GI_number: 15675049 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pyogenes M1 GAS # 5 134 6 140 141 94 45.0 4e-20 MTDILIASHGHFASGLKNSIKILTGLDSNIQTIDAYVDERDYVADIKKFVKNAKKPAVIF TDLKGGSVNQKVMLEVASHDDIYVVTQMNLAIIISILLDSEPLNKDRLKELISQSQVELV EINSSDNDQSDDFFS >gi|308169417|gb|AEHR01000030.1| GENE 62 59709 - 62291 1646 860 aa, chain - ## HITS:1 COG:lin1832_1 KEGG:ns NR:ns ## COG: lin1832_1 COG1221 # Protein_GI_number: 16800899 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 8 319 1 319 432 263 40.0 1e-69 MSKNGVHMDDAKDKVVSYLNHVSKSMTTVEIANSLNLSRSVISNYLNTLFKENRIKKISG RPIRWSKNCADVSERTSSFCNFIGYDGSMKHVIEQVSAAVAYPPNGLNILITGNSGVGKS FLAKKIYEYAKQIKIIRSNSPYFVLNCADYANNPELVSSMLFGYVKGAYTGADSSHNGLL LQANGGYLFLDEVHRLSSENQEKLFSFIDNGLFYQIGDNSHPIKSNVRLIMATTERPTDT LLTTFLRRIPIHVTIPDFLKRSIDERLTLLRYIIHQEAVKLNKKIYVNNQVVSALVQTNN RGNIGYLKNLIQIACSIAYKKQYGLDQIDLSMDSLLIDKLPNFEDYGDLLIDGQAAFIFN EKNSLKNAKFAQLMTEFHKLTVDFSSDNVQKVKSSIRKINQLLENSCQKTGLYYRHQELF KKIIEQQFGLNKTSYLEPLMFLFYEAKFCIDNHDLEPLYHHINISFSRSLHVAVCFYKNL DIEDKVKQSLIIVLAMLLSDHVDENITIRGLMIAHGKNTATSIQTVVNSLCGNYLFDAID MPINVGVSSIIQEANALIDTFNTTKGFILMVDMGSLSQLYSEISSHINGDLLVVNNLTTI TALDLALKMQQKMTFQEITNRVDQGYNIDTQYFEGVSQNINILVSCVSGLGIAEKISELF QTLMPDNIQIVPVDYSTLKYKIMNCDWNYFKQTILVLTTVDIDDKIPFDQMNIYDLLDAT GERKLNKCLSQYLSQDKLKKLNQKLLRFFSKEGISEKLSFLNPDVILKEVEDVNSKYEDF YHLKLDGKIKLNLYLHIALMIERLIVHNTKDISIQAISNEEKDFFKITKSIFQPLEMKYN IHIPNYELSLLYELFRQFIK >gi|308169417|gb|AEHR01000030.1| GENE 63 62298 - 64400 2261 700 aa, chain - ## HITS:1 COG:SP1673 KEGG:ns NR:ns ## COG: SP1673 COG0768 # Protein_GI_number: 15901508 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 16 699 8 677 680 392 34.0 1e-108 MKTYKRKNSLKSKIASTSLRLNIILGIICVLFLLLIGQLAYLQLIYGGRFQTEVQKTDKK IVCNNVPRGVMYDSKGRILVGNKANNAITYTKNSNLTTAKIYDISEKLSKYIRLNDETPT KNQLFDYYLANSKNALKINRQLPRNQRYDEHGDALDDHIVYQNTLKYLRSKKLVFSKRQK TAALIFNKISGAYTLSTIYIKNKHITGKELTLVGENLSELPGVGIGTDWSRDYPNGESIK SIIGSVSSEKAGLPNTNLQYYLSQGYSRNDRVGTSYLEEKYEPLLKGTKSKSQVISKHKS DSIDQTKTIYKGESGASLILTINSKYQKKVDKALKTVYNEAQRAGATRYSSGAYAVAMNP KTGALLAITGLMHNTKNNKIVDNALGVINQAYVMGSVVKGAMVSGGLLNNVITPANNTLP DVPIYLPATPVKKSVYPIGTFGALNAPTALEVSSNIYMMQLALRWLHAKYVPKSYISVPK NAFTILRRNFAMFGLGQKTGIDLPGESHGITGRSFDKNGNILSGSVLDLSYGNYDAYTPI QLVQYISTIANGGYRMKPYLVQSIGKTDPHNNKISILYNTKPKVQMCVPYKKDQLDVIKK GLYQVVHGTNGWGTGRFLKKEKPAIAGKTGTAETFFFDPEHPGNIHAPEVINSTFVGYAP ADNPKIAVAVVFPGLNPNLEGTFTLQVAKAMFNNYFKMYK >gi|308169417|gb|AEHR01000030.1| GENE 64 64455 - 64940 686 161 aa, chain - ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 159 4 160 160 168 61.0 4e-42 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEMYTIVGSDESDPLSGK ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVTTSGK >gi|308169417|gb|AEHR01000030.1| GENE 65 65013 - 66113 736 366 aa, chain - ## HITS:1 COG:SPy0348 KEGG:ns NR:ns ## COG: SPy0348 COG1559 # Protein_GI_number: 15674503 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Streptococcus pyogenes M1 GAS # 13 357 147 511 524 238 37.0 1e-62 MFDQDTKKQNKLKKEASNKLLRWIFTFLGVFVVLFMLVATVFTIYALQPVDSQNRSYVVV HIPVGADNKEISKILEKKHLIRSSIVFNAWMKIKSVKGFQAGDFYISPSMNNNQIVNQLQ GAGGRIVKNHLLVREGEQIDEIATAVASHTKYSKSSFINLMNNQEFLQELAHKYPKLLKS SMKSKNVRYHLEGYLFPAKYDVYQSMSLRELVDKMVAKTNETLKPYYTDIKKLKMTVHQV LTLASLIEREGVNKKDRRMIAGVFLNRLDAHMPLQSDIAVMYALKKHKHRLSLKDIKVDS PYNLYVHKGFGPGPFNNPSLDSISAVLNPLERNRHYLYFVADLKTGKVYFNRKYIQHLNK NNSLGQ >gi|308169417|gb|AEHR01000030.1| GENE 66 66137 - 68551 2589 804 aa, chain - ## HITS:1 COG:SPy0769_2 KEGG:ns NR:ns ## COG: SPy0769_2 COG0072 # Protein_GI_number: 15674815 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 150 804 4 657 657 506 40.0 1e-143 MLVSYNWLKDFLDLDIEPNELAEKITRTGVEIADVIHPQSGLKKIVVGHVLTCDIVEGTH LHVTKVNVGEAEPLQIVCGAPNIAAGQKVIVALHGARIAGNEKIKRGKIRGIQSEGMICG LQEIGFDDKVVPAKYANGIFVFDEDTDVQPGDDIYEALGMDDYILDFDITPNRADTLSME GAAYEVGAIIDQTPKIEEISLKSDGQDWTNSLKVSVDPELATKFYLRKITGIKICSSPLW MQRRLWNAGIRPINNVVDVTNYVMLLTGQPLHVYDATTFSNGLLEVRRAHASETLQLLND KSVELDENDIVITDGNKPVMLAGVMGGKASEVTDQTTDIILESAIFNGSLVRKSALRHAN RTEASSRFEKGVNSDNTMKALDIAALLLRNNTDGTILNGIIKGIDKIAEPVNIRTTISYI NKTLGTNLKDHDIIKIFDRLNFPIKVNGDELVVNVPHRRWDISIAADLVEEVGRIYGYDN LISTQPLLAETHGGYSPTESIIRRIKKIIQGQGMLEAISYSLTTLEKATSYALNPKPTVK IAMPLNTSRSVMRQNLICGLLDAAAYNMARNQSNIGIYEQGRVYYKDDSNYIEHEHIAAL YSGNIYADNWQHLDQNIDFYYVKGQLTNIFIELGLDLHDIVYKAENIKGMHPTRTAAIYL KNKYLGMIGMLSHEELYSEKALRGNEIYVYELDLDVLIPEISKGVTAKSAPKFPAINRDL SLLIDAHITNDAIISNIKANAGKYLTDIKVIDVYEGSQIEAGKKSIAYSLTFRNEKETLT DEVVSLAIAEITHNLESELGAVVR >gi|308169417|gb|AEHR01000030.1| GENE 67 68551 - 69600 1358 349 aa, chain - ## HITS:1 COG:BS_pheS KEGG:ns NR:ns ## COG: BS_pheS COG0016 # Protein_GI_number: 16079916 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Bacillus subtilis # 5 346 3 343 344 434 57.0 1e-122 MNLFEQLKSLQEIGLEKIRNSKDIQELEKVRVNIVGKKGQLTEILHSMKDVSKEERPKIG QQVNKLRDIFQKELEETKQSLLQVALNKRLEGEKIDVTLPGRRIMAGAKHPINIILDDLE AFFIGMGYQVVQGPEIETDHYCFEMMNLPKNHPARDMQETFYIDEENLLRTQTSGDQARV LEVHDFSKGPLKMVGPGKVYRRDDDDATHSHQFQQMEGLVVDKNVTMSDLKGTLELIAKH EFGADRKTRLRPSYFPFTEPSVEMDVSCFNCNGTGCGICKNTGWIEVLGAGMVHPNVLKN AGIDPEVYGGFAFGVGLDRFAILKYGVSDIRDFYTNDIRFLSQFRKEED >gi|308169417|gb|AEHR01000030.1| GENE 68 69891 - 70238 383 115 aa, chain - ## HITS:1 COG:lin1183 KEGG:ns NR:ns ## COG: lin1183 COG1733 # Protein_GI_number: 16800252 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 19 114 5 102 107 82 48.0 2e-16 MTDKSMEITENAQPDPKDYSLCGHLINAFSIIGKKWNGLIINALCDTEAMRFRDLARCIS RCSDRVLVERLKELEQENIVQRQVDHGIISYSLTTKGKELKPVCEHVHNWADKWA >gi|308169417|gb|AEHR01000030.1| GENE 69 70311 - 71072 213 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 111 250 101 240 255 86 35 5e-16 MKEINSVNNSIIKQIRKLKQKKYRKDQMSYLIEGFHLVKEALDMEQKYEYVIGTQETINK LKLTNKIFDKSIILVNQAICDQLSDTENSQDIFMVLPINQPHSFSFKFGKWVILDNLTDP GNVGTIIRTADAASFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIEQVLLDFKNN GLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLN AAVAAGIMIYYFS >gi|308169417|gb|AEHR01000030.1| GENE 70 71221 - 72180 853 319 aa, chain + ## HITS:1 COG:L164312 KEGG:ns NR:ns ## COG: L164312 COG0706 # Protein_GI_number: 15672551 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 32 317 23 306 307 159 36.0 9e-39 MKKIKYIITSALIAIIAIITTACATNTGNWTPPLVGPYAWIYNLFGHPLQNIMLHVSNLL GGTNGAGWAIIIITFVIQLIVLPLRLSSQSKMIKQQEKTKRLQPQLSLIQAAMKKNSNKQ MQLSQLQMKIYKDNNMSMIGGMGCLPLLIQLPIMIGIYQAVAYSKTLASSSFMGISLSKP SIVFAVVAAILYLIQGYLSLIGISEQQKQTMLITVIASPLMTLVFSIMYSGALGLYFLVG GIVIVIQQLIATFILMPKVRADVDKELTKHPIKEVINQAMIDQILNESSDQMNQNKSDEI TNLHEQLRKRNSGKQNRNK >gi|308169417|gb|AEHR01000030.1| GENE 71 72265 - 73806 1246 513 aa, chain - ## HITS:1 COG:lin1415 KEGG:ns NR:ns ## COG: lin1415 COG0642 # Protein_GI_number: 16800483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 13 505 9 482 483 279 37.0 7e-75 MNLIHHYNKKETRRSSLTLKWVAIVATTIMVSFVIFSLTIYSLIKSQSLEQESDVTKNVV RTFEQRLVNINEPFQVSNVVTTLSPNTLRLISGNSPNYNRKDNGVFDDDILATLTNKDIN IYIFDPQKNLVFSNSNWVSNEDLKSVNQKKASELIYKTRGGMHFRNAERIYSNDNRKLLG TLIVDNRMVQTNKLLKQLQQSMVFLSILAIIFFLVASYFIVDGIVKPIKRMTKISREIDQ DPNARERMPNIRRNDELGELVVNFNKMLDRIQNYILQQKQFVGDVSHELRTPVAVIQGHL NLLERWGKDDPQILEESIHASLQETDRMKHLIQEMLDLTRAEQVDMQFPDKVSDVNEVLI RTVNDMKMIHKDFTINLDITDLKPDTIIRMYRNHLEQLLIILIDNAIKYSTDRKEVNVSA STENKSVIIAVQDFGEGIDSVEQEKIFNRFYRVDKARTREKGGNGLGLSIAKKLTESYHG TIGVTSILGTGSTFRLKFPLLKKKSLKGSQATK >gi|308169417|gb|AEHR01000030.1| GENE 72 73784 - 74509 861 241 aa, chain - ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 231 1 226 226 263 66.0 2e-70 MSKILIIEDEKNLARFVELELQHEKYDTTVESNGRKGLDLALRDNYDAILLDLMLPDLNG LEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQ IEKRASGEAAGVQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTR EQLLKKIWGSDSKIETNVVEVYVRYLRNKIDVPGRSSYIKTVRGTGYMVRTDELDEFDTS L >gi|308169417|gb|AEHR01000030.1| GENE 73 74625 - 75152 581 175 aa, chain - ## HITS:1 COG:SPy0334 KEGG:ns NR:ns ## COG: SPy0334 COG1399 # Protein_GI_number: 15674493 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Streptococcus pyogenes M1 GAS # 37 175 34 178 178 75 31.0 4e-14 MLTYSFLNIENSKEPLVYVDQDVKFEADFFDRAKDFILDIKNVHIKGQFFYQDPFVTGNF EVEYDVIVPSTRSLKPVSIKNSFTFTENYAEMMPSEDEDAGTVILIENDIIDLQKAVEDN LLLNLPTINLTDAEKENGEFPEGEGWTVISEENYKNRPRNTINPQFDKLKNLFNK >gi|308169417|gb|AEHR01000030.1| GENE 74 75153 - 76313 1050 386 aa, chain - ## HITS:1 COG:SP1742 KEGG:ns NR:ns ## COG: SP1742 COG1323 # Protein_GI_number: 15901574 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 385 1 362 365 207 36.0 4e-53 MDAVGIIAEYNPFHSGHEFLLNQARLISQNKPIVVLMSGNYVQRGQISICDKWSRAKSAL LSGADLVFELPFSYAVQPADIFACGSMKILEQLGVSDLVFGVEDDQIDYMNLGVKISKLA QSSHIFKDYTQTYSTQYNQMLIEQIGYDLTQPNITLAVAYAVANCSLSRPLRLHAIKRFG SGGHNDKYIQDIVASATAIRRQILYELNGDFSKLENYLPKEELLWLSKQAVFPNWEMMFP FLKYRLESTNINHLQSIYQMSEGLEYKMKAEIHQSHNFEDFLHKIKSKRYTYARLRRLCL YTLLDITCDDIEEANQIITPMLLGYSLRGRKYLKKIRKSTNLPIISKVDKKNSEIGSLRL QIKVDRFFEQLIGYDQNFGRKPFEVR >gi|308169417|gb|AEHR01000030.1| GENE 75 76323 - 76667 376 114 aa, chain - ## HITS:1 COG:BH1328 KEGG:ns NR:ns ## COG: BH1328 COG0799 # Protein_GI_number: 15613891 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Bacillus halodurans # 1 113 1 113 117 95 39.0 2e-20 MENTELLDLTLEAISERHGEETKAYDMRGISILADYYVITTAGSNRQLHAIANSIIEKVH EKGKNDYRIEGSRDSNWLLIDLGDVVVNIFTFEARGFYGLEKLWSNGKQLDIEE >gi|308169417|gb|AEHR01000030.1| GENE 76 76679 - 77212 574 177 aa, chain - ## HITS:1 COG:lin1522 KEGG:ns NR:ns ## COG: lin1522 COG1713 # Protein_GI_number: 16800590 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Listeria innocua # 1 174 14 186 191 142 42.0 4e-34 MDEKRFQHCIRVSEECKKLARLNGYHDIYKAQVAGFIHDYAKQISVDRFIKIIKEQDFDL DLLNYNRVIWHGIVGAYFIQHELKINDDEILTAVRRHTTADVEMSLLDKIVFVADYIEPG RDFEGVEEARKVAYDNLDEGVGYELAHTLAYLVKQQNKIYPKTVLAYNKWSVINSKE >gi|308169417|gb|AEHR01000030.1| GENE 77 77280 - 77909 662 209 aa, chain - ## HITS:1 COG:SPy0308 KEGG:ns NR:ns ## COG: SPy0308 COG1057 # Protein_GI_number: 15674475 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pyogenes M1 GAS # 22 208 24 210 210 178 45.0 7e-45 MSEVFLKTKPKVLLVRKNLEAKQIGIMGGTFNPIHNAHLLIADQVAKKLNLDEVWFVPDN IPPLKKVADKIDVNDRRTMIELAIAGNPKFSVKSFELKRGGISYTVDSLKYLKKAYPQYR FYLIMGSDQVAQFSKWKEPNTIATLATLVGVNRANYSANTNYPMIWVDCPSFAISSTLIR QNIKTNNSIRYLVPEAVREYIKKRGLYRE >gi|308169417|gb|AEHR01000030.1| GENE 78 77909 - 79021 965 370 aa, chain - ## HITS:1 COG:SP1749 KEGG:ns NR:ns ## COG: SP1749 COG1161 # Protein_GI_number: 15901581 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 4 370 2 368 368 363 48.0 1e-100 MCDEEIRCIGCGSILQDKDSKLSGYMPHSAFNKMIQEPDTSVYCQRCFRLRHYNEITPVN ENNDDFLRLLNSLGNKKALIVNVVDLFDFNNSLITSLDRFIGDNEFVLVGNKVDLFPKNS KESKIKDWMRQEANRNGLFPKKIFLLSAIKKRNIDELINYLATKGKNEDIYFVGTTNVGK STLINAIIETRSEYKNLITTSKFPGTTLDSIKIPLNEGHYLVDTPGILSKKQMASRLTGS ELELVAPKKQLKPATYQLLPGQTIFLAGLGRIDFIKGPASGFTIYVARDLYLHRTKTINA DEFYLKHKSDLLNPPCDSDDLGALKGQIYSTSEKSDILFGGVGFITVPSGVVIKAYTPEG IGLGIRRALI >gi|308169417|gb|AEHR01000030.1| GENE 79 79026 - 79538 545 170 aa, chain - ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 160 25 182 194 146 44.0 2e-35 MIFRPTYTIDSIYNLDINALKNMGIKAIFSDLDNTLLAWNNFETDDSLQKLERRLADADI KLIVISNNSSERISKVLDVYRIEFAARARKPLPIGINKAIAKYNLNKSDVLMVGDQLLTD IVAGNLAGVRTVLVKPLVETDKWNTRINRCVEKFIFLFLDLLIQLSLRSI >gi|308169417|gb|AEHR01000030.1| GENE 80 79657 - 81549 2342 630 aa, chain - ## HITS:1 COG:L185031_3 KEGG:ns NR:ns ## COG: L185031_3 COG1299 # Protein_GI_number: 15672941 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Lactococcus lactis # 293 627 2 349 351 290 45.0 5e-78 MKIEELLNPKLAILNLQANDKDSAIREMADMMADQGIVNNEEEFIKSIWDRENQTTTGIG DGIAMPHARNKNINKAAVLFAKSENGIDFKSLDGKPVHLFFMIAAPEGADNAHLQALAKL SSLLIDPEFVNELKKATSGEEVISLFKQKDAAITNEKNKKPKISSERPLIVGVTACINGI AHTYMAQEALIKAGEALGYNVHIETNGSEGVKNKLTAEDISKSEGVIIASDKKVEMARFD GKPLVSAPVVAGINKPQDLIKQIADHQASIYNAGGQTTKQADKAEISVGSTIYRNLMNGI SHMLPFVIGGGILIALSFIVEQYAGGAKSPLFVFLNTIGGMAFTFMVPVLSAYIAESIGD LPALMPGFVGGYMASNVINNAKSPAGFLGGLAAGFMAGYITLALRKVFSKIPKSLEGMKP MLLYPVLGLLLIAAIMYYIVSPIFSGLNFAITNFLNHMGTGNLIILTSILGGMMAIDMGG PFNKAAYVFASGAFANNPHDPVNAILMAAVMVGGMVPPFATAIGTVLFKNKYTESERRAG ISNWILGWSFITEGAIPFAAADPGRVIPSCVLGSAISGFIVGLTKVGIPAPHGGFWVAPL ATNILWYFIAVIVGSLVSGVVLSLWKKTVK >gi|308169417|gb|AEHR01000030.1| GENE 81 81577 - 82491 1018 304 aa, chain - ## HITS:1 COG:SP0876 KEGG:ns NR:ns ## COG: SP0876 COG1105 # Protein_GI_number: 15900759 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Streptococcus pneumoniae TIGR4 # 1 301 1 301 303 278 46.0 1e-74 MIYTVTVNPALDYVIQLEKFNNGDISRSNNCNFFAGGKGINVSQILNQINVENTAWGFVG GFTGKELVRQLNTKRIVSDFVKISDLTRVNVKIHAKSESEINASGPKIFPKEIEAFKMRL EDLTSEDIVVLSGSLAPSLPADFYKQLLPTIVEKGASFAVDTTGKALLETIPYKPLVIKP NHHELADLFDIKIESKEQLFECAKKLLDMGAQNVIVSMASEGGYLITSDHIYHGIPAVGK VVNSVGAGDSMLAGFVGTYTMTKDVIESFKVGMACGAATAFTEDIAIKEQIDAIYPQIGV ETII >gi|308169417|gb|AEHR01000030.1| GENE 82 82491 - 82763 230 90 aa, chain - ## HITS:1 COG:FN1439 KEGG:ns NR:ns ## COG: FN1439 COG1349 # Protein_GI_number: 19704771 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Fusobacterium nucleatum # 2 86 160 241 245 63 48.0 9e-11 MQFNFNASFLGSNGLGSNGCYTTPDCAEADIKKQAVDCSKVTFILMDKSKIGIESFVNFA KVESVTLITDQLTEMDKKKIPKKTNIEEIN >gi|308169417|gb|AEHR01000030.1| GENE 83 82763 - 83242 520 159 aa, chain - ## HITS:1 COG:BH0826 KEGG:ns NR:ns ## COG: BH0826 COG1349 # Protein_GI_number: 15613389 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus halodurans # 1 146 1 145 251 119 46.0 2e-27 MLTQERHQIIVSHLKSRGICSVKELCSVTNSSQATIRRDLYELQQKGKLIRVRGGARSLD EFSSDVEQTIRFNLHVEEKKQIAQAAAMHVRDGDNIFIDAGTTTYEMIQFLRDKKDLTVV TNGIDAAIACIELGIRTKILGGTIKKKHMLLLVHKLVSS >gi|308169417|gb|AEHR01000030.1| GENE 84 83386 - 83742 549 118 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526538|ref|ZP_03956587.1| ribosomal protein L20 [Lactobacillus jensenii JV-V16] # 1 118 1 118 118 216 92 5e-55 MPRTKGGTVTRKRRKKILKLAKGYRGAKHLQFKAASTQLFVSRKYAFRDRKKVKSEFRRL WIARINAAARQNGLSYSKLMHGLKVAGVDINRKMLADIAYNDEKTFAELAATAKNALN >gi|308169417|gb|AEHR01000030.1| GENE 85 83779 - 83979 313 66 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519517|ref|NP_965447.1| 50S ribosomal protein L35 [Lactobacillus johnsonii NCC 533] # 1 66 1 66 66 125 90 1e-27 MPKQKTHRASAKRFKKTASGELKRHQAYTGHRFHGKTKKQRRHLRKAAMVSASDLRRIRQ MLSQMR >gi|308169417|gb|AEHR01000030.1| GENE 86 84001 - 84513 394 170 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 1 161 1 163 166 156 47 5e-37 LNEEIRAREVRLIGEDGEQIGVVTKSEALQRATEADLDLVLISPNAKPPVARIMNYGKYR FEQQKKEKENRKNQKVTAVKEIRLSPTIEGNDFDTKLKHVRNFLAKGAKVRVSIRFRGRA ITHNELGKEVLEKMAEQAKDLSSVTASPTMEGRSMFLILSPLSDKDKKKK >gi|308169417|gb|AEHR01000030.1| GENE 87 84706 - 86637 2191 643 aa, chain - ## HITS:1 COG:L0357 KEGG:ns NR:ns ## COG: L0357 COG0441 # Protein_GI_number: 15673893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Lactococcus lactis # 5 641 4 644 646 794 59.0 0 MSLVITLPDGSKKEFNHALTIKEVASSIATSLAKSAVAGKVNDEIRPLDFVVDTDARVAI ITDKDEEGLQVLRNTAAFVFEMVASKQYPSVRLGTSELEEDGFFVDTDKEDQIKASELPD LEKEMQKIVKNGEKIEYKIVSKSELLDLFKDDPYKLELLKEEADEVAVYKLEDFVDFGFN ALLLNTGKLKHFKLLSVAGAYWQGKSSNPMLQRIFGTAFFKEADLKADLQRREDIKERDH RTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVLMNLDA YKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIAELGMM HRYEKSGALSGLQRVREMTLNDGHTFVELDQVQSEFAKILKLIMEVYRDFDITDYYFRLS YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGEAAFYGPKLDIQTKTALGND ETMSTIQLDFMLPERFNLSYVGKDGEEHRPVMVHRGIVGTMERFIAYLTEIYKGAFPTWL APLQVKIIPVNNDAHGEYAQNVKDQLMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVL GDDELQHNSVNVRKYGSEDQESKALSEFVSELSADVASYSRNK >gi|308169417|gb|AEHR01000030.1| GENE 88 86906 - 87805 803 299 aa, chain - ## HITS:1 COG:BS_dnaI KEGG:ns NR:ns ## COG: BS_dnaI COG1484 # Protein_GI_number: 16079950 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Bacillus subtilis # 1 298 1 309 311 195 37.0 1e-49 MENISSILKKIIANHKCQINQDQIIDLVLNNASVQEFLQVHKLKITDDIFKRSLNNLYIY IQECEHPSKVNQGYEPYLFVNGNMIDFAYRATLQKRIDDRKKYVQNLIHLVDLPLSLKNV ELSAVDKTPERIKALQEIGLFIQQYHVDKHAKGLYLEGDFGVGKTYMMAGLANGLAQEGN EVVFLHVPSFIAGLSDHFKDNSLTDKIMKIATATIVIFDDIGAESLTEWSRDEVLGVILQ RRMDNQLPTFFTSNMNFDALTIHFAQVKNSYDDVKAKRLMERIRCLSKEVFVGGENRRR >gi|308169417|gb|AEHR01000030.1| GENE 89 87822 - 89168 1343 448 aa, chain - ## HITS:1 COG:lin1596 KEGG:ns NR:ns ## COG: lin1596 COG3611 # Protein_GI_number: 16800664 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Listeria innocua # 19 417 22 423 458 81 27.0 3e-15 MYSCTNPKQPFYVANNVTITADGQKILSRLYQPLIGHLGMSIYITLANEFNSLPLSIDYK VLYQLQEQLDCGLKDIFDSIHKLEAVGLVKTYLGDNPRLGSIIIFKLSEITNAQEFFSTF LLSSLLQEKVGIVAFDNLVKDFTPSIFQGLNDAQDVSSGFFDVFKLTGDHAIEPTKEVMD AKKVIAADSNSKVDIKMGKMIQKIDWQFLEDLLLKYHIPANEVDSHRTEIAQLMTFYQLG EQDFTKLATMCLHAGDKKLDMKLIQRMAHNQLGQQKLVHTVEQQLSETKSEDSLIPDFDN DEKKLLEDVNSNQPLDYLYKIKEKKGGYVTANEKRVVYRLENEYRLPSELINVLIKTCLD YTSVLTLNLADRIANNWLQNKIHTAQEAIAYTKKWQKNRQVRRFNNNSTRKQAKTDWKNY DVDNGKNTDVSLSNEELNNIFNNFGRKE >gi|308169417|gb|AEHR01000030.1| GENE 90 89172 - 89639 548 155 aa, chain - ## HITS:1 COG:BS_ytcG KEGG:ns NR:ns ## COG: BS_ytcG COG1327 # Protein_GI_number: 16079952 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus subtilis # 1 151 1 151 152 175 53.0 3e-44 MECPNCHENASKVIDSRPSDENRSIRRRRECENCGYRFTTFERVEQTPLLVIKNDGTREP FNREKILRGVMMAAQKRPISSQQLDTLVDHVDNAVRKQGVSEISSKEIGEIVMDELANLD DVAYIRFASIYRQFTDVSGFMEAMTDMLKKQHGED >gi|308169417|gb|AEHR01000030.1| GENE 91 89714 - 90235 470 173 aa, chain - ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 167 1 168 197 132 46.0 5e-31 MTYFLGLTGGIATGKSTASNFFKKQGIPVIDSDLIAHQQLSKRNVIEKLSQLFGNMILTS SGQIDRKKLGAIVFNDKNSLAKLNAELHPLICQQIKLKIAEYERIGCPFVVLDAPLLYEL KLDKVCNTVLVISLNFELQKKRLKERNNLSDLEAEKRIYSQLPLEIKKIMPIM >gi|308169417|gb|AEHR01000030.1| GENE 92 90232 - 91062 638 276 aa, chain - ## HITS:1 COG:lin1599 KEGG:ns NR:ns ## COG: lin1599 COG0266 # Protein_GI_number: 16800667 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Listeria innocua # 1 272 1 272 273 252 47.0 5e-67 MPEMPEVETVRRTLEPLIKGKIISNVTIWYDKIIVNDADLFQRKVVGQKILAIDRYGKYL LIRLTNNLTIVSHLRMEGKYHFLDSDAPKQKHEHVQFTFSDNTYLRYDDVRKFGRMQLIE TGTERRNTGIKNLGFEPNSEDFTLDFFLNKVKARKRAIKNVLLDQSIVCGLGNIYTDEVL WQSKIHPLSIANKIAQDSLVELFYDINNTIKIAIQYHGTTFHSFLDADGHTGKYQSMLKV YGKSGEPCSRCNTTLEKIKVNGRGTTFCPLCQVVYK >gi|308169417|gb|AEHR01000030.1| GENE 93 91075 - 91719 764 214 aa, chain - ## HITS:1 COG:L0270_2 KEGG:ns NR:ns ## COG: L0270_2 COG0749 # Protein_GI_number: 15674124 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Lactococcus lactis # 8 214 342 548 548 257 59.0 9e-69 MYHTKKIMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLA KNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFN IRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELD LIKTLVLKIMQQAAQLDVPLIADANWGHNWYEVK >gi|308169417|gb|AEHR01000030.1| GENE 94 91682 - 93748 1659 688 aa, chain - ## HITS:1 COG:L0270_1 KEGG:ns NR:ns ## COG: L0270_1 COG0258 # Protein_GI_number: 15674124 # Func_class: L Replication, recombination and repair # Function: 5'-3' exonuclease (including N-terminal domain of PolI) # Organism: Lactococcus lactis # 10 327 6 329 329 347 54.0 5e-95 MLRETNSLKKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ PTHMLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEA DDILGAMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYG VTPKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYL IRDKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEE IDNKVQDECHYEILDKDNLSEIFATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKIYVC DDVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENN AGDLGVLANSYQEFYVQSDEIIYGKGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQ QHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISKIQST YINGLLDYIQADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDS YLFSCDYSQVELRVLAHVSHEKNNVGSI >gi|308169417|gb|AEHR01000030.1| GENE 95 93778 - 95832 1419 684 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500512|ref|ZP_05743414.1| ## NR: gi|259500512|ref|ZP_05743414.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_04262 [Lactobacillus iners AB-1] hypothetical protein HMPREF9216_0171 [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein HMPREF9216_0171 [Lactobacillus iners LEAF 2053A-b] # 1 684 300 983 983 1228 100.0 0 MKRCGFITPDELISEAIASKDFSECYCLHKVIEQKNMDLLDAFFTNISNDYFKKLLNDKV FIENYIAKNYLSSVFLERSLALFNQINYHTRKVIENSIKLGNTWANKSASINIIVAESNN YVGTDKIAFMEEYLCNILTQITRPDEIKNSDVKCLYLLQMLQNDKIFLNTEDYDLSEAFY SRFYRVLINIDHCLNVDQYSFKELREHCIVKKLYTLLFNNKLRFCHSKAFPEFLFKSKLI RRLLINIDLIHDLSNTNLSNLIKYFDYNKQIQGSEVNIFVTKHIKQIKTDAKYINLSVAI RQKIQNGNYYLDGNMYFNNNKDMMRWTNIDTCARYIAKAINNNSFDINCYQIFHSIINQQ IKDDSLLNQLLSFDIWKLKCDCSNIINILNFFETDLGRYINILNELENTRPQLLAQCRSK IINNLSRFNNKNICDYLRGKYLPLTGANIRCSVNYLVGYAHSHTTAVDYKDETVFKEPAI VLANCTFNDDYALLEMIVKILIATANPNCIDSQKNNSLFNRNLDRIVLIVLLNFHKFYIS YKNQLLAWIDFLCLQIGLDKFIEKIFLNIKYLKNNDLNILFGNLKSIINNLDSNLISLQC LNNLTSLDDKEQVNIIIQFLIYAKASNIIPFSVDNSYILAHMLDLLNRYDYVAEMKNLYE CFENIVPNHDYAFLGNKYHIRTKC >gi|308169417|gb|AEHR01000030.1| GENE 96 95877 - 96728 640 283 aa, chain - ## HITS:1 COG:no KEGG:SPCG_1088 NR:ns ## KEGG: SPCG_1088 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 12 251 7 257 1061 125 37.0 1e-27 MNKCNFNSKQFYNQLVDELIVSQKNNSLFFLIGAGVSNQQGYGDWNDYVRKLAEYWGLRN KRYADTLKYISSLAGLSNKRKIDFINQIIKKICNSDEQFKIRCLDFEKKHFGNHQLQINN DILSTLIKFSAIFFTTNYDYEVENAIGSNSIIKDYMELSETDELLPNFVVHLHGEPNGNV SNFINTSDKYLKLYANLDNLQHKLTMFYKKKKNPVLIIIGSGLQEDELLYSMCPDNEISV YALCKYDNCGNNDTISADLASIKEKFYLEKISKLFGMVRNFLI >gi|308169417|gb|AEHR01000030.1| GENE 97 96867 - 98438 1862 523 aa, chain - ## HITS:1 COG:L0369 KEGG:ns NR:ns ## COG: L0369 COG4108 # Protein_GI_number: 15672331 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Lactococcus lactis # 4 523 3 521 523 688 65.0 0 MNKLTEKVNSRRTFAIISHPDAGKTTITEQMLLFGGIIRNAGTVKARKSGHYATSDWMEI EKKRGISVTSSVMQFEYDNKRINILDTPGHQDFSEDTYRTLMAVDAAVMVIDSAKGVEPQ TKKLFKVVKKRGIPIFTFMNKLDRDGRDPLDLTAELEDLLDIECVAMNWPIGMGKQLKGL YDLANKRVELYRHEDDSDRFLPLNEDGTLDNNIALSHDSLFESTLADIELLKEAGNNFDL DKILRGDQTPVFFGSALANFGVETFLKSFVELAPAPKEHELIDNTTIAADDDEFSGFVFK IQANMNPNHRDRIAFIRIGSGEFQKGMDVTLARTNKVIRLNNATEFMSSSRVQVSEAVAG DIIGLYDTGNFQIGDSIYAGKKKIEYPELPQFTPEIFMRVTAKNVMKQKSFHKGMTQLVQ EGAVQLYRGYATDDYILGAVGQLQFEVFAFRMKNEYNSEVELTSLGGRVARWINPDQLDP KMSSSRNLLVKDREGEPLFLFENSFAERWFKDKYPDVELTSKL >gi|308169417|gb|AEHR01000030.1| GENE 98 98438 - 99082 707 214 aa, chain - ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 5 196 238 432 449 197 52.0 1e-50 MMNFKKNLVEILREPYSRVPVYDGDKDKIVGVIHIRTVLRKAFELGFDHLSYEDVMFDPL YAPETVELKDLLIEMQQTQRQLAILTDEYGGVVGLVTIEDLIEEIVGNIDDETDVAQVLF HKISENKYVISGKMTLDDFNEEFDTDLEMEDVDTIAGYVITKLGLIPGKGEKLSVKLDDG IILTTRRMRGSRLQTLLLTLPKTDTKNTKEDIED >gi|308169417|gb|AEHR01000030.1| GENE 99 99069 - 99314 339 81 aa, chain - ## HITS:1 COG:no KEGG:LJ1601 NR:ns ## KEGG: LJ1601 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 81 1 81 288 97 60.0 2e-19 MSTDPGAGDFFSKLRAKFQADEDIDADQELTLKLDEFYKAHAIDELEYSMIQGVINFKEK IAREVMVPRTDAFMVDKHDEF >gi|308169417|gb|AEHR01000030.1| GENE 100 99576 - 99866 276 96 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1367 NR:ns ## KEGG: LGAS_1367 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 96 53 148 153 110 68.0 1e-23 MFAIKATIQRPLDLVSENISSKLLKQIFRFFSIRRRKIFLIGNIALDFILCLLATILIRH ILPLSIIIDKVTGIILLIMLISTCIGAYIEYDNLSI >gi|308169417|gb|AEHR01000030.1| GENE 101 99870 - 100361 616 163 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1368 NR:ns ## KEGG: LGAS_1368 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 8 159 8 159 165 149 48.0 5e-35 MEIIQKQACTMIGKVFLPTDIDEQRSYAAAIQQVENDINFVNFLKENNLEHQRAALYVFA PDSFMYWYGVVVHQLPNELKGLRQFGLPSCKVTNYITESQNLTHFLAPVNQTIPMFLDKL NKENVTYHENLGESDVPYILEELDLDTKKLTQSLYLDASDLSK >gi|308169417|gb|AEHR01000030.1| GENE 102 100381 - 101139 701 252 aa, chain - ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 239 21 259 264 124 34.0 1e-28 MDGQYAFSVSENILIKKRLFKGTNLTDEQIAEIKQAELDQRTLNLAQDFLSYQMRTVNEV FVYLRQKGVSETAIKVAIADLKKLKLLDDQNYVKLYVNNNLQIGKEGPNSIRHKLLNKGV DNKLIENVLSSYDNIDWVDPGIRLVKSMSNKLGKLSTKAIIQKTKLKLMQHGFSSDQLDL VIEQLDLSNNSDEQLEALIKEGIKAYKKYAQEPDFKRKQKIRRYLFAHGFDSTEIDQFLD GQIIDFNSLEDY >gi|308169417|gb|AEHR01000030.1| GENE 103 101755 - 102675 889 306 aa, chain + ## HITS:1 COG:SP1901 KEGG:ns NR:ns ## COG: SP1901 COG2265 # Protein_GI_number: 15901728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 303 133 433 436 238 43.0 2e-62 MYAPKSQKIIDLPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGIKTVVVRQSHA TDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIGKNYI TEQILNKKFILSPRAFFQLNPEQTEVLYSTALNYLELNANSVLVDAYAGVGTLGILASEK VKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKDGIAIDALIVDPPRT GLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYDVRLIQPVDMMPQTPRWEGIA KLVLRK >gi|308169417|gb|AEHR01000030.1| GENE 104 102707 - 102880 114 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIKSFFIYKKTSCYTQLAKKRHGRKIPSKYYVIHLIRESVKKHYNSKIKTMGNIPSN >gi|308169417|gb|AEHR01000030.1| GENE 105 102918 - 103544 597 208 aa, chain - ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 206 104 305 308 223 52.0 1e-58 MGQYAALFHQLGYNVLLPDARSHGASQGHFIGYGWPERNDVKKWSQYIIKKQGSNSKIVI FGLSMGAATAMMTSGEKLPTQVKAIIEDCGYTSIEDELNYEANKLYKLPSMVEVPIVKLL SLSVKIKYGYFLSEGNCIKQLEKNHRPFLFIHGEKDKFVPMYMVYKNYRACRGPKELWVT KNAAHAESFPKHPKIYKNKIAQFLNKYV >gi|308169417|gb|AEHR01000030.1| GENE 106 103642 - 103872 213 76 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1375 NR:ns ## KEGG: LGAS_1375 # Name: not_defined # Def: alpha/beta fold family hydrolase # Organism: L.gasseri # Pathway: not_defined # 22 68 20 66 314 62 59.0 7e-09 MQKKHRKKCYIWLITIITMFFTLYLGAGYYFYQVAFVPGHKSFLKKHKALSKSDPLYKEK LWYLNSKKATIFNKIC >gi|308169417|gb|AEHR01000030.1| GENE 107 103960 - 104253 305 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302191194|ref|ZP_07267448.1| ## NR: gi|302191194|ref|ZP_07267448.1| hypothetical protein LineA_04222 [Lactobacillus iners AB-1] hypothetical protein HMPREF9223_0623 [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF9223_0623 [Lactobacillus iners ATCC 55195] # 1 97 1 97 97 162 97.0 8e-39 MKLVNLLQLMQDVDSNYQIYFHEDTHPNNYPISKIIFSQNKCILTSLSINPRTIYQLLTI CRQIKHKNVNVYFAVNNHEYSIFGMQIQPDKKQIILK >gi|308169417|gb|AEHR01000030.1| GENE 108 104292 - 105179 1295 295 aa, chain - ## HITS:1 COG:L177590 KEGG:ns NR:ns ## COG: L177590 COG1210 # Protein_GI_number: 15673321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 2 292 12 303 313 395 70.0 1e-110 MKVRKAVIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQFIVEEAKKSGIEDILIVTGKSK RPIEDHFDSNPELEAELKAKHKDSLLELTQSITRLGVNIYFTRQPHPAGLGDAIYRARSF VGNEPFVVMLGDDLMSDTVPLTQQLINCYNRTHASTIAVMKVPHEEVSKYGVIAPDDEIE PNLYNVKTFVEKPSLDEAPSDLAIIGRYLLTPEIFEILASQKPGRGGEIQLTDAIDTMNK TQRVFAHVFTGERHDVGNKEGYLETSIEYGLTHPETSEELKQYIIKLAAKLSNQK >gi|308169417|gb|AEHR01000030.1| GENE 109 105219 - 106139 731 306 aa, chain - ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 23 282 27 280 289 134 32.0 3e-31 MKKGSIKHSCSHFMLILTQIMTRGEIGQTSIIIAYYILFSIFPVIMIVGNMLPLLQINTS SIATYLNVIFPEQIAQFILPIVKSLLHQQSNGFISLGIIFALWSFSGLVNSIRIAMNKIY GVYEQEKTCPWWYYFVTRTLMLLLSIFMIYIFLLAIFVVAFGNQIMNFLGVTLNFSVEWL NQLLHYRWPLIILMTILFNTYINYTIPNISMKSRITFPGTIFTTICWCGLSYFFGLYLHE FGIRWENYGIIGTFIIFLMWLNLAAILFLIGVCLNATISYIKYGNAQYKLRPITDYLKSC TSKANR >gi|308169417|gb|AEHR01000030.1| GENE 110 106143 - 106928 1140 261 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 249 13 252 252 254 51.0 8e-68 MQKSGRLLASLFEELREVIKPGISTWEIEKFAQKYVKSHGGRLSEQGFEGYKYGTCISVN DEIAHATPRKDKILNEGDLVSVDVTCNVDGYETDSCTTYPVGKISAEDQRLLDVTKKAMY LGIDQAIVGNRIGDIGSVIQKYVEDDNHFGDVRELVGHGIQPTIHEDPEVPHFGKAGHGL RLREGMTITVEPMVEAGGDWRILQKTVEDPNDDWVYYATPDGSKAAQFEHTFAITADGPK ILTLQKPYDGFEKYLPHFDEE >gi|308169417|gb|AEHR01000030.1| GENE 111 107099 - 107641 557 180 aa, chain + ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 3 142 4 142 149 118 44.0 6e-27 MKAQIVFASMTGNNEDMAEILSEELTTLGFDVTNTDVSFADATSYLDADLCIMVTYTYGE GIFTDELDDFYEQLIQLDLSGKKFAVMGSGDKIYKEHYCENVDDFKKAFEKCGATQAANP VKIENAVDDHDVILIENAAKEMLADFKKIKNWHNRDNPNMSIFLSIKSRRRLFKIRRLAI >gi|308169417|gb|AEHR01000030.1| GENE 112 107612 - 108754 1190 380 aa, chain - ## HITS:1 COG:lin2681 KEGG:ns NR:ns ## COG: lin2681 COG0381 # Protein_GI_number: 16801742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Listeria innocua # 1 379 1 377 379 487 63.0 1e-137 MKQIKVMTVFGTRPEAIKMAPLVLKLKADERFDEVTVVTAQHREMLDQVLEIFDIKPDYD FNIMHKNQTLGEITSKVMLDLSKVIQDEQPDIVLVHGDTTTSFAAGLATFYEQKKLGHVE AGLRTWNKYSPYPEEMNRQMTDDLTDLYFAPTSLSKNNLLKENHNSDHIYITGNTAIDAL KQTVQKDYHHEVLDKIKAGNKIILVTMHRRENQGEPMRRVFKVMKQVVDSHNDVEIIYPV HLSPRVQAVANEVLAGDPRIHLIAPLDVVDFHNLAKRSYFIMTDSGGVQEEAPSLGKPVL VLRDTTERPEGVAAGTLKLVGTDVDVVRKEMITLLENKQAYEKMANANNPYGDGCASDRI IEAIASYFEPNLYCKPSDFK >gi|308169417|gb|AEHR01000030.1| GENE 113 108867 - 109046 111 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|309803310|ref|ZP_07697407.1| ## NR: gi|309803310|ref|ZP_07697407.1| conserved domain protein [Lactobacillus iners LactinV 11V1-d] conserved domain protein [Lactobacillus iners SPIN 2503V10-D] conserved domain protein [Lactobacillus iners LactinV 11V1-d] conserved domain protein [Lactobacillus iners SPIN 2503V10-D] # 1 59 1 59 59 63 100.0 5e-09 MIYLIYLTGILIVMASVCLVISMDKKKNANLRKKMLFVAIICQLLIFTFIFIMLNTAFK >gi|308169417|gb|AEHR01000030.1| GENE 114 109189 - 110424 1521 411 aa, chain - ## HITS:1 COG:lin1833 KEGG:ns NR:ns ## COG: lin1833 COG0513 # Protein_GI_number: 16800900 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 24 411 22 416 442 193 32.0 5e-49 MFKWNVMYLKEIREVLNDEKKARPTLIQERTYDALKNGESIVGLAKTGTGKTLAYGLPIL ERAREIGGLAVILEPTSELAVQTKNVLLPYVKALGLKSIALVGAGNRNRQMEQLKKEKPS ILIATPGRLFDFISAKKINYQDIKALVIDEADDILEFAKLDLLSALGQNLSSDAQIVLFG ASESSITKNSEAIFERSFFLIDVRPEQKLAVKHYFLQVSNEYKIQFLQRLTKLDKFKGLI FFSSNESQMRFARIVAHTKMRFAILNNEMDKTVQKNILTSFQKGKVNLLFVTDLIARGLD LSEVTYVVNFEIPNDANTYLHRSGRTGRMNNAGYVVNLGDDHDFRKLKKMIAPVEVKQVY FKGYQLVTEKPLPKAKAKKVVSTSETKKKGKKKNRWKKQKNKGYHAKKQDK >gi|308169417|gb|AEHR01000030.1| GENE 115 110480 - 111046 626 188 aa, chain - ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 11 185 5 179 179 177 51.0 9e-45 MANCDNISSIIDRRLFTEEDIKLMCKRLGKELTKEYAGKDLLVIGALKGAVFFLTDLVRE MDVPLQMDFMDVSSYGDSMESSGKVRLDVDVQTDVKGRDVLIVEDIVDTGHTMKYMKDLL ASRGANSVKCCALLNKTERRVDDVDVEYYGSIVENEFVVGYGLDLAGRYRNLPFVGVLKP EIIAKYTK >gi|308169417|gb|AEHR01000030.1| GENE 116 111139 - 112482 1371 447 aa, chain - ## HITS:1 COG:BS_yugS KEGG:ns NR:ns ## COG: BS_yugS COG1253 # Protein_GI_number: 16080182 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Bacillus subtilis # 10 438 11 431 434 243 32.0 8e-64 MSITSITANLIVIGIAFLIAIFFVVSEFALVQTRSSQLEDLIANKQGNIKKLHRALHMVK NLNEYLSTTQVGTTLVGVILGWVGQSTIEKGLTKLFGMANLFGGKTNAILGATVGVILLT YLEVVITEIVPKNVAIDMPVKCLMAIVNPLVMFHIIVYPFVWLLNHSADLFLKLMGLHTA GEEKEVYSQSEILRLSQKAVTGGSLDQDDLLYMERAFELNDKDAKDIMTDRTRVEVLDVK DNVKQALHMYLEEGYSRFPVVRDNDKDDVVGYVYSYDLVKQSIDDSDVPISRLIRAIITV PESMKIQDILKLLIKKHTPIVLVVDEYGGTSGIVTDKDIYEELFGSIKDEIDDVADEYIV KDETGIIRVSGKTTLYDFERYFHTKLKAFQDNDIITVGGYFMEQYPDLNAGEFVELEGFK FKLVAIEQGFMRWFEVEKIVKDTPINE >gi|308169417|gb|AEHR01000030.1| GENE 117 112528 - 113226 632 232 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0564 NR:ns ## KEGG: LGAS_0564 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 232 3 234 234 214 42.0 2e-54 MLDLLVSPAQWAYFDNWYNFISPTIFLAFGACFIFVGLLPISCIKNKITITLFIINVCLG LILAAVVYVHNQSAKEYFKESHYVSAMTRTYSFQLFSKQYYAYDDVDTLRYISDPSTPLA IKSVYKATQVKEPITYLGKDDCYVYIKMHNQKLKFGKDICRKINGNVAYMTGYRFDMRSA GFSKIGFLKLPNYFRDKLEIPAKLWNTKAPQKVINNYDRPGLVGRWITDSCK >gi|308169417|gb|AEHR01000030.1| GENE 118 113230 - 113454 289 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|259500494|ref|ZP_05743396.1| ## NR: gi|259500494|ref|ZP_05743396.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] hypothetical protein LineA_04167 [Lactobacillus iners AB-1] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0914 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0818 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0488 [Lactobacillus iners SPIN 1401G] conserved hypothetical protein [Lactobacillus iners DSM 13335] conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] conserved hypothetical protein [Lactobacillus iners ATCC 55195] hypothetical protein HMPREF0522_0914 [Lactobacillus iners UPII 143-D] hypothetical protein HMPREF0523_0818 [Lactobacillus iners UPII 60-B] hypothetical protein HMPREF9210_0488 [Lactobacillus iners SPIN 1401G] # 1 74 1 74 74 108 100.0 1e-22 MKQKGMLLGLVLMIIGIVCWLMVKYVLYDIKVLYPVGCIILCVGGLIVTINLFINTVKDD KILRSKIDQKKEKE >gi|308169417|gb|AEHR01000030.1| GENE 119 113594 - 113809 202 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315653674|ref|ZP_07906594.1| ## NR: gi|315653674|ref|ZP_07906594.1| conserved hypothetical protein [Lactobacillus iners ATCC 55195] conserved hypothetical protein [Lactobacillus iners ATCC 55195] # 1 71 2943 3013 3013 82 92.0 8e-15 MNNTSDLNNEAKESLTANKPKDLSTTEKKTNSKITKRLPQTGEKENSVLGLLIIGLSGLL GIVDRKKRKDK Prediction of potential genes in microbial genomes Time: Wed Jul 13 07:55:41 2011 Seq name: gi|308169412|gb|AEHR01000031.1| Lactobacillus iners SPIN 2503V10-D contig00007, whole genome shotgun sequence Length of sequence - 10736 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 6009 7226 ## HMPREF9243_0764 KxYKxGKxW signal domain protein 2 1 Op 2 . - CDS 5999 - 8380 2466 ## gi|325912953|ref|ZP_08175327.1| Gram-positive signal peptide protein, YSIRK family - Prom 8553 - 8612 9.3 + Prom 8510 - 8569 5.7 3 2 Tu 1 . + CDS 8765 - 10267 1325 ## HMPREF9243_1360 hypothetical protein + Term 10288 - 10336 2.5 4 3 Tu 1 . - CDS 10470 - 10694 176 ## Swoo_1071 ATPase central domain-containing protein Predicted protein(s) >gi|308169412|gb|AEHR01000031.1| GENE 1 3 - 6009 7226 2002 aa, chain - ## HITS:1 COG:no KEGG:HMPREF9243_0764 NR:ns ## KEGG: HMPREF9243_0764 # Name: not_defined # Def: KxYKxGKxW signal domain protein # Organism: A.urinae # Pathway: not_defined # 1614 2000 1394 1746 3279 74 26.0 4e-11 MANDKGEAVFKNILIEDGATYAVKTVVYEKQEYIDQDGSTKQKVESDLSDEHSAKIYTPT LAETEKTAVNDAVNVQKNDKDNLLTPEEANEITTKIINNLKAKFGKDYDKEVEKVQVITK KVERNKNAFPEAYDAHKLLGNQDTAEAGDAFIWYRDGGVVKITRDLTIRMKPAEVKPLEG NSVQAGATKIKLANFATGAEGITIFGKEFKQSQLKLKNGKWTIDSAHNAAGIQSVDKNAD GTLTVTFNESLNQGTTIITQVTDGNDDKKPFRSEVKQAAVVARTDKATYPQQVTAGVSQW NKDTKKLTDEAKKKVIADLEQKITGLNGNVKVTINDQLISLGDTHFISVNATYPDGNQDS HSVQLILTDDVPAKVTMKATDNKVTVQNQVITVQANQAFSFQASAVDEHSHVVHDVRTEN RPSWLNSNEGTVQSDYNKATNKKRNTKGSDKVPYVVTLSGTAPMKPGTHVFTVKTWDGAN PENSGSQQVTLKVEARPLTGATQTVEVNDTNALSKLTPESFVPQNVKTGLGNGVTYTWNN GKAPTNATINTTGQTVEIQATFADHSPSTTIQGKLIVQDTKLAQLDVVAEKGAKVEHGTA VQTVATNVQNFPGNPPTLTTYVNEPMIVHVKVKDNSNKITDAKLNGNSSFVQSDDREYQK NNRAKKGSAKDPYTITFTGTPTTKGTKNTRIDTWDGANTQGWVPLNIVTKEQAAQFDGQA VSGDTQRVEVNASTADLKPENFVSAATKALYKKATGGVTYTFTQGKLTNNTVTSGQGQDV SITATFSDHSTRTITGKLVVFDQTNPTADITVSSTALGQAPHIEDKNGVKEVHVYGTEDF TIKVQAHDNSGKVAEIALVQNGKPGSYPFPLTQQTSGVGSSAQPKVLTLTGATGKNTNNQ SDSTQLSEGAQWNNRAIQVKDGSNHTTIINLRVINHQQTTKYDPQVQAVTVKASTKALPE AKSAISNVKSLPNGAQYTWVNGSPVTQSGKRQVKVTYPDGSSDTVNVTVTYQDDVAPTIT FPTSHTYEGVAVTHFYRGEPVDITIHATDADSNMKKLWLSNGDMHRTERQIGEDIKGLNV QSQLNGKNASYHITGTVPTDFADRYTVGNNQAVGAKKFTRLFNAEDQNGNQSAIDNSTKF MYIVHERAEKYKASYGQLPITVGTKSASQSSIEFKDISKGRLFAGEVANSSYKAVEKTVD KPNGTTFTLMNPVDGVQIDSTTGKLTLQGQAKQVGQTIPIKVKVTYSDKSFDIVDVSMKI RDDIPADVQYEAGKGSQVNGTTVTVYANEAFEFKANVTDNTGIVYDAEYNGDNLSWLNND KQTYQAKYKQDTNGKRNTLGSKEHPYVLTFTGTAPNVKNTTHQGKIRTWDYQDANSGAES GFTLVVKSQSENYTDHSDLKSKLQGTSQDVEVNNEHPVQPNAEQSVSQTTKEMLKDKGVT YSWKTNHVPDTRTVGEKTGIVVVTFKDGSTLDISNAKVNVKDTVKPVITGWSISSDWKGD QPKIEDKNGVKEIHVYGTENFTLTVKATDNSGLVQSIDVVHNGKAVTLGFTTKDTLTGTG TTANPKQLTMIGATGPNIKDKDGYSNRTFKVTDAAGNSVEQQFKIVVHQQTTKYEATVAA GAIEKDYGATLTEEEIKAKVSVPQYSQGKPAYQVSLAGKLPSTTSAGNHQVDVKVTYPDG STDIVQVPVSIKAQPQKDAYELTYAPEQVEPGKSLTTQVPTLKKGNETIVSKTGIVTSYS IAEDLKTKGYSVTNEGRLTIPASESATKVGQKLAIAVQVTYHDGTTEKTIAQVSVTSPNK IDRTNDKNAPIPSGYLRVTLQAGEGTIYQGDAQAKTYDVKVNTALEPADYPQVKSQTNYR PYKWSVAAGTVITETMDPDKNNQVTIESKATLKTAVTIEPRYGTEKGTIGETIIIGSPTF YKENNGQVTTDVDQVLDRRMQYTLDKANDHVTIDASTGVIHYTPIASELNGKDEETVTIP VTVTYDDRSIDKVNVTVTIKRA >gi|308169412|gb|AEHR01000031.1| GENE 2 5999 - 8380 2466 793 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325912953|ref|ZP_08175327.1| ## NR: gi|325912953|ref|ZP_08175327.1| Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners UPII 60-B] Gram-positive signal peptide protein, YSIRK family [Lactobacillus iners UPII 60-B] # 1 790 1 790 2795 1472 99.0 0 MFGKNNKKMRDLEQREKVTYYGIRKFTVGVVSVAISAAFLLSGQTRYVLADEQPAIESRN NKQLVISKQEHADDGVNSKANNTQSVSKQATNTQLVTGQTDKISSGAQVKKAAHVAEKHS DKTQSAKEQTDSLADKTKANQSEKDEKGSTSKRMTEAQRKDLTQAVQSLKQQIEGLKTED KKAVEEIVAAYIGAQAVLSDVNVNQTVGHAALESLKRTQSLAKQLVTLSHFQSRSAQTGD KYDVSDILNRASEHLRQERSIGQTRGNREYNEKLLGSYTELGGGGSGYDLYTQIFRNKRN GLFGQDPNFDGMNIANAEKDVWARVTPLEDGSGYFWEINFNLGRNEHQHPKYFFTVPKNQ KITKATVVYRENDDKYKTFAANGENALKTIFRDDIKRIEDTQAEFSDNLNKTPGDDGNFA SLVYPANNGKWVDQYEITDPKMHPEWKDRLDQDAKRRDQLINKIKDNSQTVYFIQPHNGK NGYSIRFETKGPLERDKNTRKYYLAGFRSQEYNTYNLTLQMYGRLDSDISVIEKYPLHVR RNGRFYINQGKAINCDNVYRLKENGQKVDFSFWGDIDKAKREGKYKPGDFGKFSDAKGED LIDSGYMVLNGGKNGQDAHSDIGKLDLNRYLAGEHSDSWKAPSGKAKWGEGDLTWTVYDN KGHEHLLSDANTPGVNHFQFKRMQTVNGKTETELYNIMFVIKPKTPSLSQEERVGKRLPL KLTNAAGTYKNLVASNGTKGVPMVLYKNVNGRFEPMQEEYKETVTETTYNDQGKPTTIKK QVTKKRDLQVFGK >gi|308169412|gb|AEHR01000031.1| GENE 3 8765 - 10267 1325 500 aa, chain + ## HITS:1 COG:no KEGG:HMPREF9243_1360 NR:ns ## KEGG: HMPREF9243_1360 # Name: not_defined # Def: hypothetical protein # Organism: A.urinae # Pathway: not_defined # 191 494 1 306 312 89 26.0 5e-16 MFELLPKSIQRKLNLIAYLLDHPTSPPSIHFLMDYLNITYPTLKHDISELNELFDQYFNI TITKTQISLKAFVPLSMAFFTYMLKQDLTIMSLINECFLQHINTFKALAQKIYISRSVMY HDLTQLKDFITNHYSALSITTHPVQITGPERIVRQFFTDYYFLGYNLSNWPFDQVSQSAI EDLMLLIAEKIPLIAFFSDHPILPIILAINVIRYRQGHLVEDIRPAYDYDACRRYLSDPI NHDHLHNLEDRLGITFSNEAVEQLLVNIISHQTSYDTHYMWQCAQTDPTLYQALITLKSN MLSLMHAFHIPSIDEEALDLFLLTAYNLCTFHGTDSNSFEEEIYQHEQDCLAVGTELERI DPHFLTQMQRILTTFQEQMHIPCNDTRTLQATWYYCHIFPQTLRQLKTPTQPIRLGLYTI NQLQRKHWAYEINLLFGDKIQLVSIHSPNSLLHLEANQVDALLTALPIELKQIKTRYISG YPSGQDVEWIYQLLFPSSDS >gi|308169412|gb|AEHR01000031.1| GENE 4 10470 - 10694 176 74 aa, chain - ## HITS:1 COG:no KEGG:Swoo_1071 NR:ns ## KEGG: Swoo_1071 # Name: not_defined # Def: ATPase central domain-containing protein # Organism: S.woodyi # Pathway: not_defined # 15 74 435 494 596 65 53.0 6e-10 MLQRLIFFLSLYHIIDEAYALTPDGQNSFKQEAIDRLITLSDELRNDIVIILAGYSQPMK KFLQANEGLSVVFS