Prediction of potential genes in microbial genomes Time: Wed May 25 13:34:07 2011 Seq name: gi|260196066|gb|ACQN01000001.1| Lactobacillus jensenii 115-3-CHN cont1.1, whole genome shotgun sequence Length of sequence - 77178 bp Number of predicted genes - 73, with homology - 72 Number of transcription units - 39, operones - 19 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 52 - 111 11.3 1 1 Op 1 . + CDS 138 - 1283 1238 ## COG1929 Glycerate kinase + Term 1379 - 1415 -0.9 + Prom 1329 - 1388 7.4 2 1 Op 2 . + CDS 1432 - 1797 532 ## COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase + Term 1811 - 1864 14.1 - Term 2203 - 2239 5.1 3 2 Op 1 . - CDS 2291 - 2530 400 ## gi|256851075|ref|ZP_05556464.1| predicted protein 4 2 Op 2 . - CDS 2559 - 2768 303 ## lhv_0182 hypothetical protein - Prom 2914 - 2973 7.0 + Prom 2872 - 2931 6.7 5 3 Op 1 4/0.111 + CDS 2963 - 6181 3898 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 6 3 Op 2 27/0.000 + CDS 6200 - 7852 2000 ## COG0286 Type I restriction-modification system methyltransferase subunit 7 3 Op 3 . + CDS 7875 - 9161 469 ## COG0732 Restriction endonuclease S subunits + Term 9168 - 9202 3.2 - Term 9150 - 9194 8.1 8 4 Op 1 2/0.333 - CDS 9197 - 10120 690 ## COG0582 Integrase 9 4 Op 2 . - CDS 10164 - 11276 569 ## COG0732 Restriction endonuclease S subunits + Prom 11397 - 11456 8.2 10 5 Tu 1 . + CDS 11634 - 12557 790 ## COG1715 Restriction endonuclease + Term 12766 - 12805 3.4 + Prom 12984 - 13043 7.3 11 6 Tu 1 . + CDS 13096 - 13392 307 ## PEPE_0527 transcriptional regulator + Prom 13398 - 13457 5.3 12 7 Op 1 . + CDS 13496 - 13765 455 ## PROTEIN SUPPORTED gi|227526287|ref|ZP_03956336.1| ribosomal protein S14 13 7 Op 2 . + CDS 13780 - 14205 389 ## EF0587 hypothetical protein 14 8 Tu 1 . - CDS 14198 - 14353 142 ## - Prom 14465 - 14524 4.7 + Prom 14380 - 14439 9.8 15 9 Op 1 . + CDS 14503 - 15054 634 ## COG3600 Uncharacterized phage-associated protein 16 9 Op 2 . + CDS 15084 - 15470 249 ## COG3654 Prophage maintenance system killer protein + Term 15477 - 15518 8.2 + Prom 16458 - 16517 7.5 17 10 Op 1 . + CDS 16571 - 17395 575 ## LJ1019 hypothetical protein + Term 17429 - 17474 -0.9 + Prom 17422 - 17481 8.8 18 10 Op 2 . + CDS 17518 - 18021 443 ## LCRIS_00174 RNA polymerase sigma factor + Term 18198 - 18251 11.1 + Prom 18097 - 18156 6.6 19 11 Op 1 2/0.333 + CDS 18263 - 19141 749 ## COG3711 Transcriptional antiterminator 20 11 Op 2 2/0.333 + CDS 19119 - 19463 476 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 21 11 Op 3 8/0.000 + CDS 19483 - 20892 1429 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Prom 20899 - 20958 1.6 22 11 Op 4 . + CDS 20980 - 22620 1587 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 23 11 Op 5 . + CDS 22648 - 23931 1564 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 24 11 Op 6 . + CDS 23951 - 25837 2427 ## SPH_0587 hypothetical protein + Term 25896 - 25940 11.2 + Prom 25933 - 25992 8.2 25 12 Op 1 . + CDS 26126 - 26362 200 ## Ldb1019 hypothetical protein 26 12 Op 2 . + CDS 26370 - 28046 2095 ## COG2759 Formyltetrahydrofolate synthetase 27 12 Op 3 15/0.000 + CDS 28046 - 28504 422 ## COG0597 Lipoprotein signal peptidase 28 12 Op 4 . + CDS 28504 - 29409 992 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 29 12 Op 5 24/0.000 + CDS 29418 - 30476 995 ## COG0505 Carbamoylphosphate synthase small subunit 30 12 Op 6 . + CDS 30478 - 33651 2812 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Prom 33670 - 33729 7.2 31 13 Tu 1 . + CDS 33755 - 33928 231 ## gi|282933762|ref|ZP_06339117.1| hypothetical protein HMPREF0886_2978 + Term 33985 - 34040 13.9 + Prom 34038 - 34097 7.7 32 14 Tu 1 . + CDS 34225 - 34773 477 ## gi|256851106|ref|ZP_05556495.1| predicted protein + Prom 35093 - 35152 12.1 33 15 Tu 1 . + CDS 35173 - 35394 355 ## gi|256851107|ref|ZP_05556496.1| conserved hypothetical protein + Term 35441 - 35475 3.1 + Prom 35432 - 35491 8.7 34 16 Op 1 . + CDS 35517 - 35807 227 ## LGG_02056 phage-related infection protein 35 16 Op 2 . + CDS 35821 - 36744 945 ## COG3600 Uncharacterized phage-associated protein + Prom 36792 - 36851 9.5 36 17 Tu 1 . + CDS 36906 - 37190 341 ## gi|256851110|ref|ZP_05556499.1| predicted protein + Term 37210 - 37251 -0.1 + Prom 38002 - 38061 7.8 37 18 Tu 1 . + CDS 38152 - 39207 795 ## COG0582 Integrase + Term 39212 - 39247 1.8 + Prom 39250 - 39309 4.6 38 19 Tu 1 . + CDS 39422 - 39790 259 ## LCRIS_01143 transcriptional regulator, XRE family + Term 39792 - 39828 0.4 - Term 39761 - 39830 10.1 39 20 Tu 1 . - CDS 39832 - 41334 856 ## LCRIS_01706 hypothetical protein - Prom 41396 - 41455 8.4 - Term 41437 - 41487 10.7 40 21 Op 1 . - CDS 41488 - 42153 796 ## gi|256851114|ref|ZP_05556503.1| predicted protein - Prom 42173 - 42232 6.1 41 21 Op 2 . - CDS 42238 - 43218 685 ## gi|256851115|ref|ZP_05556504.1| predicted protein - Prom 43248 - 43307 5.9 - Term 43278 - 43318 6.8 42 22 Op 1 . - CDS 43343 - 43810 744 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) 43 22 Op 2 . - CDS 43890 - 44135 313 ## gi|256851117|ref|ZP_05556506.1| predicted protein - Prom 44168 - 44227 6.0 - Term 44200 - 44229 1.4 44 23 Op 1 . - CDS 44242 - 45126 902 ## COG1307 Uncharacterized protein conserved in bacteria 45 23 Op 2 . - CDS 45200 - 45613 406 ## LCRIS_01133 L-fucose operon regulator - Prom 45714 - 45773 7.8 + Prom 45732 - 45791 9.2 46 24 Tu 1 . + CDS 45893 - 47581 1678 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP + Term 47601 - 47646 6.2 - Term 47594 - 47629 5.1 47 25 Op 1 . - CDS 47648 - 48247 862 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Term 48261 - 48296 1.9 48 25 Op 2 . - CDS 48314 - 49249 1263 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase 49 25 Op 3 24/0.000 - CDS 49316 - 51796 2937 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 50 25 Op 4 . - CDS 51809 - 53752 2100 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 53810 - 53869 6.5 + Prom 53755 - 53814 5.5 51 26 Tu 1 . + CDS 53837 - 54457 695 ## COG0344 Predicted membrane protein + Term 54483 - 54522 6.0 - Term 54471 - 54510 5.2 52 27 Op 1 . - CDS 54526 - 55410 949 ## COG2017 Galactose mutarotase and related enzymes 53 27 Op 2 24/0.000 - CDS 55424 - 56806 1265 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 54 27 Op 3 4/0.111 - CDS 56807 - 57337 914 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 55 27 Op 4 5/0.000 - CDS 57340 - 58248 1133 ## COG4974 Site-specific recombinase XerD 56 27 Op 5 6/0.000 - CDS 58241 - 59560 1591 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation - Prom 59590 - 59649 7.4 - Term 59583 - 59638 5.6 57 28 Op 1 13/0.000 - CDS 59660 - 61747 2203 ## COG0550 Topoisomerase IA - Prom 61778 - 61837 5.0 58 28 Op 2 . - CDS 61909 - 62757 631 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 59 28 Op 3 . - CDS 62822 - 63715 644 ## gi|256851133|ref|ZP_05556522.1| predicted protein - Prom 63811 - 63870 7.9 + Prom 64175 - 64234 9.6 60 29 Tu 1 . + CDS 64259 - 64687 480 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 64707 - 64748 4.0 - Term 64703 - 64729 -0.6 61 30 Op 1 8/0.000 - CDS 64734 - 65492 890 ## COG0164 Ribonuclease HII 62 30 Op 2 . - CDS 65489 - 66331 880 ## COG1161 Predicted GTPases - Prom 66380 - 66439 4.5 - Term 66423 - 66449 -1.0 63 31 Op 1 . - CDS 66451 - 67227 971 ## lhv_1070 Na+/H+ antiporter 64 31 Op 2 . - CDS 67296 - 67994 428 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters - Prom 68016 - 68075 7.9 - Term 68059 - 68090 2.1 65 32 Tu 1 . - CDS 68092 - 68316 317 ## COG4479 Uncharacterized protein conserved in bacteria - Prom 68348 - 68407 8.8 - Term 68376 - 68412 3.1 66 33 Tu 1 . - CDS 68424 - 69266 1098 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 69412 - 69471 9.4 + Prom 69273 - 69332 7.6 67 34 Tu 1 . + CDS 69415 - 70080 549 ## COG1272 Predicted membrane protein, hemolysin III homolog + Term 70091 - 70139 7.3 - Term 70079 - 70127 7.3 68 35 Tu 1 . - CDS 70144 - 70626 417 ## BcerKBAB4_5408 hypothetical protein - Prom 70650 - 70709 5.7 - Term 70650 - 70688 5.4 69 36 Tu 1 . - CDS 70850 - 72010 1293 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - Prom 72055 - 72114 9.2 + Prom 72041 - 72100 11.3 70 37 Tu 1 . + CDS 72126 - 73031 631 ## COG1284 Uncharacterized conserved protein + Term 73061 - 73114 2.1 71 38 Tu 1 . - CDS 74081 - 75451 1513 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 75513 - 75572 5.7 - Term 75633 - 75678 10.9 72 39 Op 1 . - CDS 75684 - 76745 963 ## gi|256851145|ref|ZP_05556534.1| predicted protein 73 39 Op 2 . - CDS 76783 - 77178 526 ## gi|256851146|ref|ZP_05556535.1| predicted protein Predicted protein(s) >gi|260196066|gb|ACQN01000001.1| GENE 1 138 - 1283 1238 381 aa, chain + ## HITS:1 COG:CAC2834 KEGG:ns NR:ns ## COG: CAC2834 COG1929 # Protein_GI_number: 15896089 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Clostridium acetobutylicum # 3 376 6 376 380 323 48.0 5e-88 MKILIAPDSYKNCMAARQVAVVMKKGLSRIFPNAEYVLVPMADGGEGTVDALVSATNGQF VDVQVHNPLNQLVIAKYGFLGDKKTAVIEMAAASGIQYVDKKTMNPMITTSYGTGEMIQD AVRRGAKQIILGIGGSATVDGGCGMAQALGVKLLDKNGQAIKLGGAGLADLTHIDISQVP EQIKKIKIYIASDVTNPLTGSQGSAVVFGPQKGATEQMISVLDQNLHHLAQVVKNDLQVD YEATPGSGAAGGLGFGLLAFTNSEMKQGIELVTDFAQLAEKAKGADLVITGEGSTDFQTK FGKTPYGVALTTKKVAPQAPVVVLSGNIGPGVENLYENNVIDAIFSTPSGAKSLEQAIKD APEDIALAAEEVGRLIKSIIK >gi|260196066|gb|ACQN01000001.1| GENE 2 1432 - 1797 532 121 aa, chain + ## HITS:1 COG:FN1138 KEGG:ns NR:ns ## COG: FN1138 COG3576 # Protein_GI_number: 19704473 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase # Organism: Fusobacterium nucleatum # 17 119 24 129 143 57 32.0 8e-09 MKKLESTKLTADQQKFFTDKLAFVSSVSKDGEPQVGPKGSLNVVDESHLAWVEVTHAHLW ENVQAGSKVAVVVADVPSHTNVRVIGTPHVSEDKEFIEAQYKKTGKTSGDVVVIDIEEID A >gi|260196066|gb|ACQN01000001.1| GENE 3 2291 - 2530 400 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851075|ref|ZP_05556464.1| ## NR: gi|256851075|ref|ZP_05556464.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 79 1 79 79 126 100.0 5e-28 MSKVLKLGFINSENKNTTLSLPNAKDGLDEAVVRQAMKNISDAHAFNKDGVDPYHSARMA KYVETTTTTLFDDTKSNQD >gi|260196066|gb|ACQN01000001.1| GENE 4 2559 - 2768 303 69 aa, chain - ## HITS:1 COG:no KEGG:lhv_0182 NR:ns ## KEGG: lhv_0182 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 66 1 66 71 69 56.0 3e-11 MNFELLEQSVQYTFSSESYTNGKLTRTLKNVAKDATASALAQVGQALSSLQGDTLSDAIL IQKQNIKLV >gi|260196066|gb|ACQN01000001.1| GENE 5 2963 - 6181 3898 1072 aa, chain + ## HITS:1 COG:lin0521 KEGG:ns NR:ns ## COG: lin0521 COG0610 # Protein_GI_number: 16799596 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Listeria innocua # 39 922 10 880 995 396 32.0 1e-109 MIYDKEDIFENSLIEYLSTGKVPQYEINEPSQNYVIDTLRKQGRKQIWQYLPNVKTTPAL WQNFKKILEQHNQDKLDGPLSENEFAQVKKEISSLNTPYQAGQFLYGVNGISQIEIDLDD GRHVFLKVFDQKQVGAGDTVYQVVNQIQRPAVIHGKQERRFDTTLLINGLPIIQIEEKKD GISANEALNQMHQYIEEGQYSDIFSTVQILVAMSPHECLYMANTTADKFNKDFAFHWQRK KDNTQVNNWLEFADTVLSIPMAHQMATSYMILDGTPNNQMLKVMRPYQVYATQAVIEKLK HWDFEYGENRVGYVWHTTGSGKTITSFKTAWLASRLPNVDKVVFLVDRIALTRQTMEKYH AYDPEASEDDWGNVLDTRNTTDLKNKLRKRGSDIIVTSVQKLETLVKRDSFKDPDKNIVF IVDEAHRSTGGDAFSLLKKAFKKGAWVGYTGTPMFDDTTANGVRTQDVFGEPLHIYTIRE AISDGNVLRFKVDFQTTIDEDKMKSDFLPEFYHQRYPKWTEADIKHKIENLQPDDIDDAI GPTFYDENKEHVKLVVEDIFKNWRNRSNDGQYNALLTTHVGGNRASTPMAMMYYDEFQRV NAEHQKNGGLVLKVAVTFSQSTGNDDNMVENNKNLSRAVDLYNAQFGTSFGMDDIAGYTA DVVSRLNKTAFDKNYLDLVIVVDQLLTGFDAPGLNTLYVDRILRNASLIQAYSRTNRIAD MQTKPFGRIVNYRWPVENEKLMNRALSIYANKSSAFSQDKLLKDDDNPVTVPSYKEQVNE VRKTIDRLRTLTNDTLEEVPKSEENQKELKQLLQKYSREIEILKQYDHKIDENGEEVGYD YEHPEKLLSQLGISEQEEKKITTVLPNLIKTINPVNPGNPLPDIDLRMTHIKEVVINYDY LTHLIEELINKVHEDDKEAVRKIQDKIREFTLSMDNRAYAKQIERTSRAIVNKQYPKDAE NQKYPYHIEDVHEVISQANETEIDDIIYKFRIKWGIADVVTTEELKSMFANHRLGQKDLN DSGKIDAIKKAAAETYKKRATDEKVVKLSKIKYRNSLADAIYELADELKREI >gi|260196066|gb|ACQN01000001.1| GENE 6 6200 - 7852 2000 550 aa, chain + ## HITS:1 COG:SA1626 KEGG:ns NR:ns ## COG: SA1626 COG0286 # Protein_GI_number: 15927382 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Staphylococcus aureus N315 # 3 535 11 518 518 469 49.0 1e-132 MSEKDITTKLWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEDYLVKNDILDIEDGES VNDAYVREASGEDLTDYLEDIASSLGYAIEPHDTWASLIKRVQDKEVIPSDYQDLLDHFA KNTELANNKTASQDFRGVFNDVNLGDSRLGSNTNDRAKSISKIVQLVDTIEYKDENGKDI LGTIYEYLIGQFAASAGKKGGEFYTPFEVSKVLAKLVTANLKGEPEEFEVYDPTCGSGSL LLTVQGEVPGGKKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEFTNIHLSNADTLEADWPD GLDAQGVDRPKTNFDAVVANPPYSAHWDNNENKLKDPRFSAYGKLAPKTKADYAFVLHGL YHLSPEGTMAIVLPHGVLFRGAAEGVIRQNIIEKNYLDAVIGLPANLFYGVSIPTIVLVF KKNRQNKDIFFIDASREFEKGKNQNKLTEENIDKIISTYLKREDVDKYAHKAELDEIKEN DYNLNIPRYVDTFEPEPPVDLGKVADELEEVNQKIAENKKELLEMLKELTTDDDDLRAQL DKFISVFEKN >gi|260196066|gb|ACQN01000001.1| GENE 7 7875 - 9161 469 428 aa, chain + ## HITS:1 COG:SA0392 KEGG:ns NR:ns ## COG: SA0392 COG0732 # Protein_GI_number: 15926110 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 225 402 5 183 403 176 48.0 8e-44 MTDDLMKSSGSRDAGNSTHADEQRLYPKVRFRGFDEPWKKVKLGDVAEIIGGGTPSTSNL EYWDGNINWFTPTEVGKTIYLHESQRKLSELGLKKSSARLLNPGAILFTSRAGIGNTGII INPSATNQGFQSIQPNKNIIDSYFIFCLSSRLKRYALKHSAGSTFTEISGSEMKKAKIRI CAKNEQNKISTCIKSLDSLLSLQQRKLELENQLKQFNLQNLFSDEQRLYPKVRFRGFDEP WKKVKLGRNVKRIRRKNKNLETNIPLTISAQFGLVDQRDFFGRVVASENLANYILLKRGE FAYNKSYSKEAPYGSIKRLEKYNEGALSTLYIAFTPENINSDFLKAFFDTTKWYSHIVQV STEGARNHGLLNISPQDFFEMSITIPKSDEQNNISRIYNLMNSLLSLQQQDINTTQQLKQ FLLQNLFI >gi|260196066|gb|ACQN01000001.1| GENE 8 9197 - 10120 690 307 aa, chain - ## HITS:1 COG:lin0524 KEGG:ns NR:ns ## COG: lin0524 COG0582 # Protein_GI_number: 16799599 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 2 307 3 308 309 397 61.0 1e-110 MSKKISTKLFYRYYGNWIDLYKKGAIRQVTLDKYYLTERKLRELAPELRLSELNRQTYQK LLNDYAETHEKHTTLDFHHHLKAAIIDALDDGMIKTDPTRRVIIKGRKPKPKKKKYLNLF ELQMLLKQLKLGTEPNWDWFILLVAKTGLRYAEALALTPNDFNYEKQVITVTKTWNYKYA GGGFRPTKNPTSKRNVMIDWQLAQQFKQITQGMDPEKPIFVSGRAFNSTINIILERLCYQ AEIPVISIHGLRHTHASLLLYEGVSVASVAKRLGHANITTTQKTYLHIIQELENKDNDKV MHHLSQL >gi|260196066|gb|ACQN01000001.1| GENE 9 10164 - 11276 569 370 aa, chain - ## HITS:1 COG:L0310 KEGG:ns NR:ns ## COG: L0310 COG0732 # Protein_GI_number: 15672634 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Lactococcus lactis # 22 370 50 407 407 80 24.0 6e-15 MGQIADVRDGTHESPKYVSQNGYPLITSKNLENGTINFDDISYISKKDYEEINKRSLVEK NDILFGMIGTIGNVAIVKKSGFAIKNVALIKSNSEIPSINLIQIIQSDIFKKYTNRLNSG NSQKFISLGDIRKFDFKMASKSENMLISKLFKKVDTLLSLQQRKLELEKQLKKFCLQNIL SDNKKCPNLRFHDFSTNWKKVKVGDIFTVTRGKVLSKDKISKTKDHIMKYPVYSSQTLNN GLLGYYHDYLFEDAITWTTDGANAGTVRLRAGKFYGTNVNGVLLSKNGYVNDANAEALNQ IAWKYVSKVGNPKLMNNVMQNIMFSIAPSVEEQVIISKLFILHSKSLKIYQANINVYTQL KQFLLQNLFI >gi|260196066|gb|ACQN01000001.1| GENE 10 11634 - 12557 790 307 aa, chain + ## HITS:1 COG:DR0587 KEGG:ns NR:ns ## COG: DR0587 COG1715 # Protein_GI_number: 15805614 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Deinococcus radiodurans # 159 306 156 305 306 88 38.0 1e-17 MKNYIYRRRSVWKAIVLALRDLGGSASRKQIRRTMAENEYDGLDYEGVFYVKVSKNGKKY SPFLFDFNFGMKNLYTIGFIEEPQRGKDIILTDLGRTADLTNFPSQEQVDKISAYWKQKD ELRYAKKKLKEKIGITGDTESEVEDTDAQDTAEDDWKIQLLEQIKQFSPAKFESFSRLLI SKMGVSIDKTKGVKLSGDHGIDGFGYFRSDEFRTSRVAIQCKRYTNGSVGESEIRDFKGT MDSFNAEYGIFVTTSYFTDSAKAIATQGNRTVTLIDGQELTDLVERYQLHITPVQTYSLD DYYFEKD >gi|260196066|gb|ACQN01000001.1| GENE 11 13096 - 13392 307 98 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0527 NR:ns ## KEGG: PEPE_0527 # Name: not_defined # Def: transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 4 95 2 93 94 65 34.0 7e-10 MNRTNLKNYLKDNFENDPDFAKDFIQCSLNVKTGIAIINLRKKMGLTREEFARLVNMPQA TILQIEQGDIDVTTDLLMKLATATKQHVEINFSPIFKD >gi|260196066|gb|ACQN01000001.1| GENE 12 13496 - 13765 455 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526287|ref|ZP_03956336.1| ribosomal protein S14 [Lactobacillus jensenii JV-V16] # 1 89 1 89 89 179 100 3e-44 MAKKSKIVKAEKQRKLIEEYAAKRRELKAKGDYIGLSKLPKDSAPTRLQNRDMLDGRPHG YIRKFGLSRIKFRELAHAGKLPGVKKASW >gi|260196066|gb|ACQN01000001.1| GENE 13 13780 - 14205 389 141 aa, chain + ## HITS:1 COG:no KEGG:EF0587 NR:ns ## KEGG: EF0587 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 126 1 125 125 85 32.0 5e-16 MQIYYPPLVEQACRFFYGSSDVSVEMKTTIYKMLIEEKLLDENGNPTEYALKKGLILRRE EVPNLSFDEFLELYPVFKRFPASNFRKIGGFWEIKTEFAMQILKEVQAGKFDLEEEVELS NYFEDKKINVNILKFKQRAVT >gi|260196066|gb|ACQN01000001.1| GENE 14 14198 - 14353 142 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MASITKRGKVWQARYSKRVKKLVKQPDGSVKYKSVHEQKSKSGFTIKKAVM >gi|260196066|gb|ACQN01000001.1| GENE 15 14503 - 15054 634 183 aa, chain + ## HITS:1 COG:L197116 KEGG:ns NR:ns ## COG: L197116 COG3600 # Protein_GI_number: 15673914 # Func_class: S Function unknown # Function: Uncharacterized phage-associated protein # Organism: Lactococcus lactis # 4 150 151 300 306 119 46.0 3e-27 MYNVFKVVNWFRLKNVEELVSEDVNVEPLTQMKVMKLLYYAQATFLVKYGQRLFDSDILA WKFGPVIAEVHDKYRGKRNIVESISYEAYQDFNTLESDIRASQVLNAVYIAFGSYSASTL MKKTHTEMPWKSTSQGAKIEDDKMEKFYKETGLDTEVSEKYDHVIMRKLYEENREAMDIL KYK >gi|260196066|gb|ACQN01000001.1| GENE 16 15084 - 15470 249 128 aa, chain + ## HITS:1 COG:SP0889 KEGG:ns NR:ns ## COG: SP0889 COG3654 # Protein_GI_number: 15900772 # Func_class: R General function prediction only # Function: Prophage maintenance system killer protein # Organism: Streptococcus pneumoniae TIGR4 # 10 103 24 118 137 58 34.0 4e-09 MNRLVLDEADEKFQGIQYEDGLSIIEEQLQAIYFGQELYPSIWEKAAFIMQKITKKHIFG DGNKRTALLATVFFLYENGYKWQRSQKDKVDLVLMVTKLDDSKEVMDFLADVLSKECIAV KSNPVDKE >gi|260196066|gb|ACQN01000001.1| GENE 17 16571 - 17395 575 274 aa, chain + ## HITS:1 COG:no KEGG:LJ1019 NR:ns ## KEGG: LJ1019 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 9 269 12 278 283 140 33.0 4e-32 MTANHQANLPTATEFQVWDKDKIREYIPHHDALKRYITINSDYKVQPSMIVLFDFSSEPI ATKYKSVIFDTQAGIILTTKNSRQLFNSLSKNSTLGLKYQNKLREQLGLKRKHVFALGNY AYFSLNGFSQINTSWLALHQFSDFIQLAETEAQASTIQLNSIQYLFKFSSCAPQIQKRLH ESITLNQELKQTAINFHRELGLNQTINNNLLTEEERLFKLQMANKPSLASLIKQVQNDDF EQYSFFMKSQTGMIWTKNDHQTGLSFTKRNNLMF >gi|260196066|gb|ACQN01000001.1| GENE 18 17518 - 18021 443 167 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00174 NR:ns ## KEGG: LCRIS_00174 # Name: not_defined # Def: RNA polymerase sigma factor # Organism: L.crispatus # Pathway: not_defined # 14 167 10 163 163 88 36.0 1e-16 MKKENISPQSLLLAWENKALIKQALKKANVYRTYNDYEDLFHEGLITYAQLLDQFTGKSL SEINKLAHKKIFWKINDELRKNQRRSELFLPIEDQEFELEESLSREDWLALATELGQLSQ VESLIFKEHFIHKRPLKILAQQYNFGLRTLSRKKGELVSRMRTKLKR >gi|260196066|gb|ACQN01000001.1| GENE 19 18263 - 19141 749 292 aa, chain + ## HITS:1 COG:SP1187 KEGG:ns NR:ns ## COG: SP1187 COG3711 # Protein_GI_number: 15901052 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pneumoniae TIGR4 # 3 280 2 277 278 179 35.0 6e-45 MTFRLVQVLNNNVGLACKEDDSQVVIMGKGLTFQKKKGDIIKASAVQKVFKLHEESPSDL TSLLATIPLDFLTVSYSLIDEAQEKYDYSVEPYIYASLTTHLYESAKRLADGRLVETYLP DLEKDYPLPYEIAGYVLDGFATRLNIKFPKQEQKSVALHFLNARTDIHTQNQAQRRKVDK NKQILAIVENELNNHQIYRNRDNANDYERLLVHLKYFINRINQKPAPQVLSAAIFQEVVK DYPRTFAIVQKINDQIKQKMGLEFTNDEQVYLTIHIPRLIRKEETNDKHNEK >gi|260196066|gb|ACQN01000001.1| GENE 20 19119 - 19463 476 114 aa, chain + ## HITS:1 COG:SP0476 KEGG:ns NR:ns ## COG: SP0476 COG1447 # Protein_GI_number: 15900391 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 5 112 1 108 114 114 57.0 5e-26 MTNTMKNSEEVATIGFSIVAYAGDARSDLVEALKSAKNGNFDEARQLVKEAEKSINLAHN AQTKMLTKEANGENVTLSFIMAHGQDTLMTTMLLKDQMDTILDLYERVFVLENR >gi|260196066|gb|ACQN01000001.1| GENE 21 19483 - 20892 1429 469 aa, chain + ## HITS:1 COG:SP0477 KEGG:ns NR:ns ## COG: SP0477 COG2723 # Protein_GI_number: 15900392 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 3 463 5 467 470 667 67.0 0 MARVKKLPKGFYLGAATAAYQVEGATKEDGRGQNMWDVYLAKHGQYSPDPASDFYHRYPE DIALAKEFGLNAIRLSISWVRLFPKIDGPVNESAVAYYHDLFKTCLDYGITPFVALHHFD SPQEMLEEGDWLNRKNIDRFIKYAKFCFLTFPEIKNWFTINELISLASGQYLGGQFPPNH HFNVSEAIQAEHNMLVAHARAVIAYHDLNLPGRIGCIHALKTGYPNSNRIEDIQACKRYD EYNNRFLLDGTLLGEYQSETMQLLQEVLQANDASLTILPEDLAILKKAAPLNGMFGMNYY RSEFVREYHGESIDQFNSTGKKGTSAFKFKGVGEFVKRPEVPTTDWDWNIYPRGLFDMLM RIKRDYPNVPTIFLTENGMALKEHLNKEKTVDDSRRIDFIDQHLEQVLKARQAGVNIQGY FVWSLQDQFSWANGYNKRYGLFYVDFETQKRYPKKSAYWFKQLGASLEE >gi|260196066|gb|ACQN01000001.1| GENE 22 20980 - 22620 1587 546 aa, chain + ## HITS:1 COG:SP0478 KEGG:ns NR:ns ## COG: SP0478 COG1455 # Protein_GI_number: 15900393 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 1 542 25 555 559 602 55.0 1e-172 MAIKDGFISIMPLVMFSSLMILIVQLPTLFGIVLPDNAKLIMVKIYNLTMGIMGLMVAGT TAKALTGNFNRTMPEGKAINSTSTMIAAMSAFLFLAVSPDPKTGALDVGFLGTQGLLSAF VAAFLTVNIYKLCIKKNITIKLPKEVPGTIAQSFKDIFPFAFAVLACVLIDLTSRAVVGA PFASVFQKTLTPLLKGVETYPGMCLIYGLSALFWFVGIHGPSIVMPAVTAFQLANTEANL KLFEAGQHPLHAMTNNFGNYIAAIGGTGATFIVPLVLIFFMKSKQLKTVGKASFIPVLFA VNEPLLFAAPLVLNPYMFFPFILTPICNVILGKFFIDVLGMNGMIYTLPWTVPGPIGVLL NTHFQLISIIFVIIMLVMDAAIYYPFLRVYDAELVKQEKSKAQKLAEEKTFANTMKKELA KQKLDKQEQEQKETNHPNLTKELKVLVLCAGSGTSAQLAHALNEGAKEEKMPIIANSGAY GAHYEIMANYDVVILAPQVRSFYSDMKADTDKLGIKLIATKGAEYINMTRNPKQAVNFLL SQLNLS >gi|260196066|gb|ACQN01000001.1| GENE 23 22648 - 23931 1564 427 aa, chain + ## HITS:1 COG:SP0474 KEGG:ns NR:ns ## COG: SP0474 COG1455 # Protein_GI_number: 15900389 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 1 421 1 433 440 435 55.0 1e-122 MHKFMDFLQNKLAPFGEKVSKQRHLKALREGFMLAMPLVLIGSLFQVIASFPMESFTKWL HQVGLDVIFNNLISNSFGLIALLTCFGVAYRLATSYNVDGLSAGALAVASMLLATPSITD KTGVAGIPYPGIGGRGLFTAIIVGLITAEIFRWFIQKDITIKMPDSVPEVVGKSFMALVP GAVILTFFEAVTWGISLTPIGNLNNLLGIVIGTPLGLIGGTLIGTFIAILLNSLFWFCGV NGGQVVNTVMQPVWLQAATANLAAWQAGKALPNIITLPFIDLFVYIGGGGATIGLALCLM FLSKSKEYKVLGKAAGIPAFFNINTAILFSFPTVLNPIMLIPFLLAPVTNAVITYFAMAL HLVPLTTGAVMPWTMPPIIGGFFACGGSWAAAILQLVLVIVSFLIYYPFFKAADAARLKA EMEKEDK >gi|260196066|gb|ACQN01000001.1| GENE 24 23951 - 25837 2427 628 aa, chain + ## HITS:1 COG:no KEGG:SPH_0587 NR:ns ## KEGG: SPH_0587 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 624 1 626 628 707 54.0 0 MTILIKNTATNPTADYAASELAYYLEKITKAEVGFSSDEADIVLQLVADHEENDHAQYQV QDGHVIISGNRPVALLIASYQYLHALGVRFLRPGKENELIPNIEVAQIKNVKAYDHVASY KHRGVCIEGANSLENILEFIEWLPKNGFNSFFIQFANPYTFLKRWYSHEFNHYLEGRDLT DAEIQTMSDEIDAAMALRDLRHHRVGHGWTGEVLGYSSEFGWESGVKLADDKRDLVAKVD GKRDLIQGTPIFTNWDMSNHKVNEEMAKVIVDYAQKHKEVDYLHVWLSDGDNNVCECDEC QKILPADQYVNFLNYLDEKLAEAGLDTKICFLLYHELLFAPQENKIKNPDRFVLMFAPIS RTFEKSYADVDYKHGIPEPTPYVRNKTTLPNSLEENLAFLFDWQRNFKGDSFVYDYPLGR AHYGDLGYMKISQIISRDVRYLDKLHLNGYISCQELRTGFPTTLPNYVMGRTLWDKSLTY EELKEEYFTAAFGKEGMQVSAYLEKLSALSSSDYFNKIGSRINAQLAAQYQGCVSETSAI LPVIIKGLSQSKNSQHENWRVLAYHRQAVIKLATALGLQASGQQAKAEEAWIDFQDFIKL HEDSFEPYLDVYRIIEVATNYAGFKYRE >gi|260196066|gb|ACQN01000001.1| GENE 25 26126 - 26362 200 78 aa, chain + ## HITS:1 COG:no KEGG:Ldb1019 NR:ns ## KEGG: Ldb1019 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 3 77 40 113 118 62 42.0 5e-09 MWPAVIIGGIFLLLATYTFLCSYIKTENNSLLLKLPYKKKVVLTQKPQKVASWRIFHIYH VELSKYEAVNYLVIQKKG >gi|260196066|gb|ACQN01000001.1| GENE 26 26370 - 28046 2095 558 aa, chain + ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 558 1 556 556 584 55.0 1e-166 MKSDIEIAQASQGLPITEIAKKLELNEQDLELFGSDKAKINWSAIKQAQANQHLGKLILV TSISPTPAGEGKSTMTIGLADALNNQLHEKTLIALREPSMGPVFGLKGGATGGGRAQVIP MEDINLHFTGDMHALTSAIDTLAALVDNYIYQDNSLKLDPNRILLKRGLDVNDRTLRKIT LGQGSRFNGIEHEASFAITVANELMAILCLATSISDLKQRIGNILVGYSIDDDPVFVKDL HFEGAIAALLGKALKPNLVQTIEHTPALVHGGPFANIAHGANSVMATNLALHLSDYVVTE AGFGSDLGGQKFMDFVSTHLEKAPDAIVVVATVRALKYQAEQSTDNLANENLAALREGFK NLARHMNNMRQYNRPVIVLINKFDSDTEAELNLLQDLIAEHGIDSEVVTYHNDGSLGGIK AAEKVRDLTNQEQGEVMRSYAKDDTIQVKIEQIAQKIYHAGKVEYSEKALAQIEHLKELG KDKLPVIVAKTQYSFSDDKKVLGAPTNFTLHVKNLALKNGAGFIVVSTGSILDMPGLPKH PAALDIDIDDEGKISGLF >gi|260196066|gb|ACQN01000001.1| GENE 27 28046 - 28504 422 152 aa, chain + ## HITS:1 COG:BS_lsp KEGG:ns NR:ns ## COG: BS_lsp COG0597 # Protein_GI_number: 16078609 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Bacillus subtilis # 3 152 1 152 154 108 41.0 4e-24 MQLLYLFIAFLVVLCDQGLKYYISHSFMLGQEHILIDGLLSFTYVKNTGAAWNILTGQMW LFYIISIIAIIACLYFLYNKKYNNPIFKTGIGLVLGGVIGNFIDRLHLKYVIDMIQLDFI NFNIFNIADSAITVGIVLVFVYLIFFSEKEEK >gi|260196066|gb|ACQN01000001.1| GENE 28 28504 - 29409 992 301 aa, chain + ## HITS:1 COG:SP0929 KEGG:ns NR:ns ## COG: SP0929 COG0564 # Protein_GI_number: 15900809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Streptococcus pneumoniae TIGR4 # 5 297 2 294 295 338 60.0 1e-92 MADFELIVATKAGRLDKYISEHSDLSRSRVQELLGSGDILVNGKQEKPSYKVANNDQITV HVPKLVPLNVEPEDIPLDIVYEDEDVIVVNKPQGMVVHPSAGHPNHTLVNALMNHTKFLA ASPEGFRPGIVHRIDKDTSGLLMIAKNANARTSLESQLAHKTNKRVYLAIVHGNFKEATG TIDAPIARNPKDRKKMAIVEGGKEAVTHFHVLEQYPGYALVSCQLETGRTHQIRVHMKYI GHPLAGDPLYGPKKTLKGHGQFLHAKILGFKQPKTGQWLEFQVDPPEIFQKELTYLRSLK G >gi|260196066|gb|ACQN01000001.1| GENE 29 29418 - 30476 995 352 aa, chain + ## HITS:1 COG:L43866 KEGG:ns NR:ns ## COG: L43866 COG0505 # Protein_GI_number: 15673583 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Lactococcus lactis # 2 351 3 353 357 254 40.0 2e-67 MKRYLILEDGTSFAGDSFGAETISTGELAVQTSNFGYQEALTDPTNAGKILVFTTPMIGT TGINSIDYEAIDPSVRGIICNEIATHISDSPNFQELDYFLKEKKIPAISGVDTRALAHKI SNQSKIKASIMDTNDEHAFDQIRALVLPKNKTTTISTSNSYAAPNIGKTIAVVDLGLKHS MLRELSLRKANIIVVPYNSKPQDILNLKPDGLVISNGPGTATEVKKGLAPLFDEFYGKLP ILGIGLGFLAICDYLNIELIDLPKPFNGVNYPVILQNSNTIWQTAMNIPQLALSENGGIN FTETYYDLHSDLLAGFYLKDKEVLATAFNPEGAPGSFDGLKIFDQFMQLMEK >gi|260196066|gb|ACQN01000001.1| GENE 30 30478 - 33651 2812 1057 aa, chain + ## HITS:1 COG:BH2536 KEGG:ns NR:ns ## COG: BH2536 COG0458 # Protein_GI_number: 15615099 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Bacillus halodurans # 1 1057 1 1058 1062 518 30.0 1e-146 MPLENDLNKVLVLGSGPNIVGSVAEMDAYTNSAIKAFLEDDIHVVLVNPNPATVSSDRQK GVTVYLEPMTLAFMKRILRMEEPDAIVTAYGSTNALAVAKELLDDGIIDDMKIKLLTTNK ELLNLVDHKKQIAFMQKNNFATSESWHLVKTDTSESIADLLSHARFPLLVTKYHQYIHNE HFKFKNVAELSEFFKTENDTEADHFNLNNYRLTEDLSNWEEVIVDVLRDNRGNFNFINIS SCLEDVAINSGDSLIISPALTLNNDHVRKIRKLSKKIMNRLNIHGFLSIHFAVSHHDTEI DLKVLTLKNRLTRTSVIARRVAMYDIGYVLAKIALGYNFNEIVQPLTGQNAAIEPVLDAV SIKFPYFSFSESGLNHYQLGDRMQASGESIGIGRNFEAAFLKGLESNFDINGLRDFYYLG KAKDGQQLLQQLAHPDELHIITLLAAISSGLTYTQIHEVCRLHPLYFEKLSQVIEVGKQL KNELSKEVLVTAKKLGFSNTLISIITQKSLEDIGDLCRNYQLNSSYLLLDGSAGLYRANC SVCYSSFGSENEVSPLKANRKVLVIGMKPMQVSLTSEYDYMIYHALKTLKDEGIATVLIS NNSEAVSTAYELVDRVYFEPITFENIKKIAQKEGIDEVLTQFSGKEINQLRPNLINAGLK LLGQENLISELAKQKINVDELPIELVPGEKIYTESQAKNFVEKHGFPVLIGGRTRELKVK SAVVYDIPALEKYINENDIDEGTISRFIEGRKYEVIAISDSHNVTIPGIIEHLEQTGSHA SDSIAVFQPQNLNKEQRAFLGKMTKEILPLIQMKGLFTLHFLQADGQFYLLQVKTYAGHN LAFLSKSLNSDLVGITTKCLLGKSLKELNLPETIWPASELIHVKMPVFSYIDYQSGNTFD SKMKSSASVMGRDTLLSKALYKGYEGSNLTIPSYGTIFISVRDEDKQRTINLAQRFHRLG FKLVATEGTATILAEAGITTGIVKKVQEDQDNLLEKIASHKIVMVINVINLSDNASQDAI RIRDVALNTHIPVFSSLQTAELILEVLESLALTTQPI >gi|260196066|gb|ACQN01000001.1| GENE 31 33755 - 33928 231 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282933762|ref|ZP_06339117.1| ## NR: gi|282933762|ref|ZP_06339117.1| hypothetical protein HMPREF0886_2978 [Lactobacillus jensenii 208-1] # 1 57 1 57 57 88 100.0 1e-16 MSNKINDVALNKQDILENAIPLVAKKKHRLLKSVGITIISLSGLVGLGILGRKRRLF >gi|260196066|gb|ACQN01000001.1| GENE 32 34225 - 34773 477 182 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851106|ref|ZP_05556495.1| ## NR: gi|256851106|ref|ZP_05556495.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 182 1 182 182 318 100.0 8e-86 MFTLKFMSIKLLEDNQDEWIYSIYTDYQEGQITINKQTFDRKLTSFEKASKRVQIKKETV EYEIYYRIAKLMKIKPGIKKYYWLHSSNFSLMPYVNFMSIKLLEDTDREWIYEIYTDCEE GMVIIDKETKIGDITSFELTSKQLNVKRETVEFWIYYCILDLMKTDPGIDEFYWINVKLD KD >gi|260196066|gb|ACQN01000001.1| GENE 33 35173 - 35394 355 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851107|ref|ZP_05556496.1| ## NR: gi|256851107|ref|ZP_05556496.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] # 1 73 1 73 73 122 100.0 8e-27 MSNVLKKYIEEKNISAYQISKESGIPYTTINNALKDGKKLEGQTVKVLKAVAIATDTTPG QLFDELIELDKRV >gi|260196066|gb|ACQN01000001.1| GENE 34 35517 - 35807 227 96 aa, chain + ## HITS:1 COG:no KEGG:LGG_02056 NR:ns ## KEGG: LGG_02056 # Name: not_defined # Def: phage-related infection protein # Organism: L.rhamnosus # Pathway: not_defined # 5 96 8 99 101 80 45.0 2e-14 MDVAEALARLKFLVRHNKFKMVRRTDKMAMPVSVPLAKELIRQLSIDDFVKHEPNRNNPL QFVWIFKTADEQKYYIKFVFTENNNLVVFISFHLDY >gi|260196066|gb|ACQN01000001.1| GENE 35 35821 - 36744 945 307 aa, chain + ## HITS:1 COG:L197116 KEGG:ns NR:ns ## COG: L197116 COG3600 # Protein_GI_number: 15673914 # Func_class: S Function unknown # Function: Uncharacterized phage-associated protein # Organism: Lactococcus lactis # 4 306 5 303 306 180 35.0 3e-45 MVYKKDFSTTYTINGHEYAITFPALFDSNTNELIPNNELDDKAAEKARQLYRKDMGLISP QDLKKYRAKLSLSQRNLAELTGLSPNTIALYEAGAFPTAANNNILKALIKNDQVLQQYLI DNSNQYSDELLSKINSYLKNENSIISPDKIKPKYTAVQLANWLLVENYFERECNKNIDPL SQMKVIKLLYFAYGRYLASTKNKLFSSPIIHLQYGPVVTEVHEKFKGQTVLNDEKIEKGA IEDYNTVSQDEEISELLHAVNQKYIDYTAAGLSKITHRKGSPWSLTQEKLIIKDQLIFDS FSKGREE >gi|260196066|gb|ACQN01000001.1| GENE 36 36906 - 37190 341 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851110|ref|ZP_05556499.1| ## NR: gi|256851110|ref|ZP_05556499.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 94 1 94 94 164 100.0 1e-39 MITLKYMSIKLLEDNQDEWVYSIYTDYQEGQIAINKHNFDGKLTSFKKASDLLRIEKGTL EYEIYYRVVKLMKTNPGIKKYYWLHSTKKMEPLD >gi|260196066|gb|ACQN01000001.1| GENE 37 38152 - 39207 795 351 aa, chain + ## HITS:1 COG:L57903 KEGG:ns NR:ns ## COG: L57903 COG0582 # Protein_GI_number: 15673214 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 345 1 356 356 252 40.0 6e-67 METKKYLTLIDQELNNLPVFIREYNLSTNHSLTTSYQYLTEIRRFFDWLRHQSLSPANSN VEISINDLKQLTRSDMMIYIDALRHSKNQQGRLNSPTTVNRSINALRSLFTFLTITADKP YFDHNIMLKIQSLNNLETLNYRAHVLESHMYTGNLKYEFLDFLSNKYASLCNKQALASFK LNKERDIAIIALILGTGVRVSECSSINISDLNLKEATLDLTRKGGQKDSIPVASWTLPYI SAYAEVRTKRYHAEKNDKAFFLTYYHKKTSRITPNGIERLVSKYSKAFGHPLTPHKLRHT LASELYGVTKDQVLVAQQLGQKGTTATDLYTHVDQKEQRKALDQLADNHDN >gi|260196066|gb|ACQN01000001.1| GENE 38 39422 - 39790 259 122 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01143 NR:ns ## KEGG: LCRIS_01143 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 1 116 1 118 119 108 52.0 5e-23 MDMCLGAVIRDRRKAMKLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMD TPSLIAAAYGKVDISSYKLKGDDIFIQKIVTELRKLSTFRAEKVCKAILSLVKEINEPTR TK >gi|260196066|gb|ACQN01000001.1| GENE 39 39832 - 41334 856 500 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01706 NR:ns ## KEGG: LCRIS_01706 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 103 497 12 421 423 192 31.0 2e-47 MSIRYCFNCGHKINKADVYCTYCGANQKTRIVPNSEAERKRILLTRSDFKKVKKYRNNNG LLNKVDLSVFRQKWIKFNQNHSFKQIFHYLPKNNFSKRKQRLVIGLLLGTCSVLFFAFWG MNYYSRDNQLSQITNYLENPNKKGFAAYIVSDKTGAISESDLKPFQNFLVNNPTETNNLI KAISHNKSYKSSIKLIKNGAYWLVFPRYKLSLPTYSLTVTTNHANSKLKINNNYKSMSKQ GNTYAVSLNKLIVGQYNLSTHVKLSGRDLSSTKSIKLFNNQTVKMDIKTLTFTVQSLPNA SVYINNKKVATLNEQGKTTINNYPITSKTKIFVSYENNDSTIDSEISSSLAHFAQKGEAV GNLQKKNGKYVYTPTWQGLASSQEAKTLLAKAFSKKITSDDFVNSTNNTDYKTLKKMFKG FNKDSKIKSYSTSVKIIKVLPLGNNESQISYEVTYKFKHKSDTRIQVMKYSNAILYKKGN NIKIQSVGGGSIISDKTKKN >gi|260196066|gb|ACQN01000001.1| GENE 40 41488 - 42153 796 221 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851114|ref|ZP_05556503.1| ## NR: gi|256851114|ref|ZP_05556503.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 221 1 221 221 325 100.0 2e-87 MENQPKENTKEISSSFATWLKTSFTSPAQAVKGQVWFGIVTILVIELTSLLAKQTDYTAL QYLAATSAYFNALYGILTSKVWMLGVTIFGVIARLVYISIIWFTHNFIYKPKQQVKLLDF INDYAHHIAISWVAVIIIVALSYSTAEWTSIATMILGFVSIFINAVATFQMLYSSKEEAK HDPIFASFLFLLLFAILIALTFAFASLIISAYINTVGISIY >gi|260196066|gb|ACQN01000001.1| GENE 41 42238 - 43218 685 326 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851115|ref|ZP_05556504.1| ## NR: gi|256851115|ref|ZP_05556504.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 326 1 326 326 596 100.0 1e-169 MILQFHYPALKNWFPKSEEIISLNHQYLKEVHFIGNSEVIEISLNSAITLSEAEQVRNFF DLIFSLFTGTKVACGQRFIITSDGKYIFIDSRNPLIHYNRELKIEASRLDFKVFKSQAKQ LFEQIDAKFFLCERLIDDYLNDDLSESFNGFIAAISNLYNEKVSYQTIEQKADQILQLIP NFLLDKLEKALKQQQLYLINWKGIEDTHLKLTIQSFPSNKDWLVNVLNLILKNAGWNSNN ITKTESFLANKVMVQKSIQVLKFFEGLIILQLIGLEAKDDLIESCNNYLDFLLFNRHNLA FEKATITKDEFLKVEPVFPLLKEIDD >gi|260196066|gb|ACQN01000001.1| GENE 42 43343 - 43810 744 155 aa, chain - ## HITS:1 COG:SPy1531 KEGG:ns NR:ns ## COG: SPy1531 COG0783 # Protein_GI_number: 15675430 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pyogenes M1 GAS # 2 153 24 175 175 178 55.0 4e-45 MKYQETKKVLNQLVADLNQMITVVHQTHWYMRGRGFMKLHPLMDKFMDDLNEQMDVVSER LIAIDGAPFSTLREFADNTKISDEKGRWDRTMDERLEILVKDYRYLADLYQKGIDISDKE GDASSNDIFTSFKTDTEKRIWMLQAELGKAPEIDA >gi|260196066|gb|ACQN01000001.1| GENE 43 43890 - 44135 313 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851117|ref|ZP_05556506.1| ## NR: gi|256851117|ref|ZP_05556506.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 81 1 81 81 145 100.0 1e-33 MKITELIQRVDDYCHNCEFFQGLKGQIDLIDYNDDYLTFDYIAPKKSTIVKLVYIVIARE NGEIFLISKNNYRKIAKKYKL >gi|260196066|gb|ACQN01000001.1| GENE 44 44242 - 45126 902 294 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 283 4 280 283 207 39.0 2e-53 MKIALITDSTSYLTKEEVKDNNIIVVPIPVIVGDKEFKEGIDITADQLFRMQDAGAAFPK TSQPSMGEMISLFNRLHDEGYDAIITITLAGTISGFNQTLMNIARTNPEYNLYPYDSKIT IRLMGYLVLAAAKMIKNGLSADEIITRLDKIRDSIDELFIVDDLNNLSRGGRLSNAGAFI GTMLHIKPLLTFDDETDKIVAFDKVRSMKRAVKKVESLTLERVNKLPFKKDLRFLVVHSN DATQAEEIKNWVNENFPENPVEVDEFGPVIGTHLGEKSIGITWMKDINKVKLDK >gi|260196066|gb|ACQN01000001.1| GENE 45 45200 - 45613 406 137 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01133 NR:ns ## KEGG: LCRIS_01133 # Name: not_defined # Def: L-fucose operon regulator # Organism: L.crispatus # Pathway: not_defined # 1 129 1 129 138 115 54.0 4e-25 MDVLHFNEIAETIKKMILEQAGLNLSQTRILLFFDETENDSLTMGELAKGLNISLSTLSR QLQQKKTKELLDVVRSETDSSKLVHLNEAGVLKASELKQLLSSIHDKIYALWNEEETKSF LTHMDSVLDELNKETIQ >gi|260196066|gb|ACQN01000001.1| GENE 46 45893 - 47581 1678 562 aa, chain + ## HITS:1 COG:SP0966 KEGG:ns NR:ns ## COG: SP0966 COG1293 # Protein_GI_number: 15900843 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Streptococcus pneumoniae TIGR4 # 1 559 1 549 551 389 40.0 1e-108 MAFDGLFIHSLLKNLSPTLLTGRLTKIYQPFEHDLVLVFRKNRKNYQLLLSINPQYPRFY LTKNSLANPKVAPTFVMVLRKYLEGSILQDIKQVGQDRIINFYFSNRNELGDEVELVLSL ELMGRHSNVILYNKQDSKIIDLLKRVNPDENRARLLLPKAKYELPPLNPGIDGFLLTKEE FSKLASENSAFDLAKKINGLDRDDRLELTGYLEDDYSFESFKTFFNHFENPKGYIFRNNK RKERIFVYQPYHLDLTPYSKNEDINQALDEFYHEQETRDWVHQRAKVVLNIVSNEQKKLS KKLIKLRKQLDQAENSEDYRIKGELLNAYLHLVKAGMTEVEVPNYYDENRPLKINLDPAL SPARNAQKYFTKYQKLRNSIKHVKKQISLAQENLAYFDSIETAVNNAEPEDIDSITDELV AQGYIRRNRKQRNKKIDEKALNKFQLSSGKIVLVGKNNYQNDWLTFKKANKHDIWFHVKN MPGSHVILTDSQPSEEDIREAAEIAAYFSKGRFSGHVQVDYVADKRVKKPNGAKPGFVIY TGQNSIEVTPEEKSVLSKRIDK >gi|260196066|gb|ACQN01000001.1| GENE 47 47648 - 48247 862 199 aa, chain - ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 6 198 1 194 194 236 62.0 2e-62 MTDKKMLFPQLQLDKAVGPKVVMKTNMGEIEFQLFEKQAPMTVENFVRLAEKGYYDGVIF HRVIKDFMIQGGDPKGDGTGGQSIWGHPFEDEFSSQLFNFRGAISMANSGPSTNGSQFFI VQNQNMPKRYTRDMREAGYPQEVIKRYKQGGTPWLDFHHTVFGQVIKGMDVVDAIAKVAT NNMDKPNDDVVIEGITIKK >gi|260196066|gb|ACQN01000001.1| GENE 48 48314 - 49249 1263 311 aa, chain - ## HITS:1 COG:SP1534 KEGG:ns NR:ns ## COG: SP1534 COG1227 # Protein_GI_number: 15901378 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 309 1 309 311 334 58.0 1e-91 MAKELIFGHQNPDTDAIGTAIAYSYFQNHFGFDTEAVALGEPNDETAFALKKFGFEAPRV IKTAANEVDAVMLVDHNEPQQSVSDIDKVTVTHVVDHHRIMNFNTAAPLYFRDEPVGCTS TVLWQMFNEKGLEIPQNIAGIMLSAIISDTLLLKSPTTTDKDHQAVEALAKIAGVDYKSY GLEMLKAGTNIADKSEEDLIDLDAKSFELNGHTVRIAQVNTVDLPEAMERKAAFINAMEA SSKANGYDMFVLVLTDILESNSEGIVVGGDETKALFEKAFDKKLVDDAVELPGVVSRKKQ VVPPLTEAFEG >gi|260196066|gb|ACQN01000001.1| GENE 49 49316 - 51796 2937 826 aa, chain - ## HITS:1 COG:SPy0910 KEGG:ns NR:ns ## COG: SPy0910 COG0188 # Protein_GI_number: 15674931 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 8 805 4 812 819 825 53.0 0 MAQKTERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTFD KPFKKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAM RYTESRLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYAT EIPPHNLAEVIDATIYLLKHPNASLADLMQFVKGPDFPTGAIVLGDKGIKEAYESGRGRI QVRAKTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGL SIVIELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDHMTPVQVGLKRILSSYLEHDADV ITKRTKYDLSKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIDKFSFTPRQA EAIVSLQLYRLTNTDVNALQAEKSDLEEKIASYDLLLTDRKVLEKQIIKELNAVKKEFGS ERRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYLKRSSLRSFQSTNDSENGLPDFDKV VFEKTMSTLTNLYIFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQIIAVFELA KLDSRLNFLLATNDGYIKQLALADIQPTRTYKSRAMIAMKLKETASRVVRVEMISPDTKK EITLFTNHAYAVRYDVNEIPTSGARAAGVKSVNLKDDDFVVDYVTVLPEYLDMMKLGIVT QRGAFKEFKYELINKVSRAKRGVLVLRELKKNPHRIAGVVLFAQNHELLVETSSARTMTI KTNDFPLGDRYSNGSFVIDPIGDGEPTSLTLGKPTHYGRDDVSELF >gi|260196066|gb|ACQN01000001.1| GENE 50 51809 - 53752 2100 647 aa, chain - ## HITS:1 COG:lin1325 KEGG:ns NR:ns ## COG: lin1325 COG0187 # Protein_GI_number: 16800393 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 5 647 4 646 655 857 67.0 0 MVKANSYDDSSIQILHGLEAVRKRPGMYIGSTDIKGINQLVYEIVDNSVDEAMAGYGKEI NVTIHEDNSITVQDFGRGMPTGMHESGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVGS SVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGSLKHLGKTNDKTGTTITFKPDERVFST TKYKYETIEERIRESAFLLKGVKFTLKDERTPNHYEEFLYTDGIKSFVSYLNEGKDTFGD VFYFEGKQDSIEIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSGFTRAFNDYAKK QGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQARSAVDALVYEKM SYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLSGKLTPAQSRNPK KNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHTIGA GVGTEFKIDDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGRVYIALPPLYRL QKGNGAKAKIEYAWTDEELERDEKAMGKGYSLQRFKGLGEMNADQLWQTTMNPESRMLIR VKIDDAALAERRVTTLMGDKVEARRKWIEQNVKFRMGEEGSILEAEN >gi|260196066|gb|ACQN01000001.1| GENE 51 53837 - 54457 695 206 aa, chain + ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 8 199 5 204 213 152 50.0 3e-37 MLTIKIALLLILAYLLGSFPTGVIVGKVFFHKDIRTLGSGNPGSTNTFRTFGPVAGMSVL LVDVLKGTLATLLPAIFHLGPHPLGIVFGMVAILGHTFSIFLGFKGGKAVATTAGFILGY NLAFFCVCAGIFFPMLFITSIMSLTAMLCITLFFIFSFLFHDPYLSSMMFVLLILIFNRH KANIIRLKNGTENIIPFGIYYWLKNK >gi|260196066|gb|ACQN01000001.1| GENE 52 54526 - 55410 949 294 aa, chain - ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 1 291 1 297 298 202 38.0 7e-52 MEYEIKNQFLNVKINSRGAELTSVKSVNSDTEFLWQADPEVWNRHAPILFPIVGRLKNDT YQYQGKSYQLSQHGFARDKEFKLLSQESDAISLVLRDDEASLKEYPFHFELVITYRLLNN LLIENLSVKNPANEEMFFSIGCHPGFNVPVNNQIKKSNYYLQMLPSKDHIRIPLNKETGL HDWAKRTIAATDTPIELTDDLFKHDALIFQLKGETKVSLRSEKTSYHVNVTTEDSPFIGV WSQYPKTADYVCIEPWWGLCDDVNADGDISKKRGIIKLGPNEEWTGKITIALHD >gi|260196066|gb|ACQN01000001.1| GENE 53 55424 - 56806 1265 460 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 5 460 9 466 466 491 56 1e-138 MSIKTPKEIVRLLNEYIIGQNEAKRAVAIALYNRYRRLQLPKSLQQDITPKNMLMAGPTG VGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVTEAVRMEEKEQFKRVK ADATKEANKTLVRLLVPGIKHENRENQMQQMMQMLMGSQQAEQPQEEVTDDIRNQRLSVA EQLNKGLLEDRQVTIEVEQAPKVNPMGDMMGQMGMDMNSLLGDMMPKKKVKRTLAVRDAR EVLIQEQSRKMVDYDTIYQKAIERTSQNGIIFIDEIDKITGKSKDAGQVSREGVQRDVLP IVEGSTVQTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKADFVSI LKDPENSLLKQYIALLEADGVKLIFTQEAIDKIAEIAYDVNQGTDNIGARRLATILEKLL EDVLYEGPDMEMGEITITQAYVEEKLSDIIMNKDLTKFIL >gi|260196066|gb|ACQN01000001.1| GENE 54 56807 - 57337 914 176 aa, chain - ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 2 174 6 179 179 177 54.0 1e-44 MTTIVSVKHNGKTAIAGDGQVTLGEKYISKKSAKKIRRIYNNQVVIGFAGGVADAVSLEE MLEGKLESYSGDLRRAAVEMAQSWRKDPTLQKLQAMLIAFNDKDLLLISGNGEVLEPDEN VVAIGSGGYFAQAAAVAMTRHAKDMDASEIAKEAVGIAADIDVFTDHEIITDEIGD >gi|260196066|gb|ACQN01000001.1| GENE 55 57340 - 58248 1133 302 aa, chain - ## HITS:1 COG:BS_codV KEGG:ns NR:ns ## COG: BS_codV COG4974 # Protein_GI_number: 16078677 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 4 297 5 299 304 253 43.0 4e-67 MTKKSLLEQFKDYLAYERGYSNLTLTAYINDLKQAEDFWKNNGGFNGFEQVSSRDVEIFI TSLASAGLSQASQARKLSSLKSLYKFLTRRNLVAVDPTQTVSIHRKSKKLPEFFYEPEIK KVLDSLSASDKFTVRNKAMFELFYATGMRVSEVSNLTLQQVDFDVQMILVHGKGNKDRYV PFGDYAKASLLRYLNEARSLFNPDENNHFVFLDNRGHQLTSRGIEYIMRKVFQKGGLSAN VHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMERLQKDYEKFFPRNEG KD >gi|260196066|gb|ACQN01000001.1| GENE 56 58241 - 59560 1591 439 aa, chain - ## HITS:1 COG:BH2466 KEGG:ns NR:ns ## COG: BH2466 COG1206 # Protein_GI_number: 15615029 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Bacillus halodurans # 2 435 3 435 435 567 61.0 1e-161 MTQKVTVIGGGLAGSEASYQLAKRGVEVHLYEMRPIKMTPAHETGNLAELVCTNSMRSDQ LTNAVGLLKEEMRRLDSLVLRAADATKVPAGGALAVDRELFSKYITDELAKFDNLHLHHE EITKIPNDGITIIATGPLTSDDLAKQIQEFSGTSSLHFFDAAAPIVASDSINMDIVYKKS RYDRGEAAYLNCPMDKQQFTRFWEELVKADTAELHGFEKDEVFEGCMPIEVMAARGEKTM LFGPLKPVGLEDPKTGKTPYAVVQLRQDNAASSMYNLVGFQTHLKYGEQKRVFSMIPGLE NARFVRYGKMHRNTYMASPDVLNATYEAKKQAGLFFAGQMTGVEGYVESAGSGLVAGINA SRLARGLDLATFPVETALGSMANYITTTSSKHFQPMNASFSLIPPLEKKIRNKRERKQMI SERGLEKLAEFAEEMKIND >gi|260196066|gb|ACQN01000001.1| GENE 57 59660 - 61747 2203 695 aa, chain - ## HITS:1 COG:SPy1164_1 KEGG:ns NR:ns ## COG: SPy1164_1 COG0550 # Protein_GI_number: 15675140 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Streptococcus pyogenes M1 GAS # 7 572 27 589 589 708 63.0 0 MPTRKKNLVIVESPAKAKTIEKYLGRSYHVIASKGHIRDLPKSQMGVDIEHDYQPKYISI RGKGETIKELKKEAKKAKFVYLASDPDREGEAIAWHVAHILDLNDGQKHRVTFHEVTKDA VKNAFKNPRMIDMDTVDAQQARRVLDRLVGYSLSPILWAKVKKGLSAGRVQSVALKLVLD REQEIKDFKPEEYWTIDAEFTKGRKKFQASFYGLDGKKTELPNNEAVQAVLKKIDKNKPF TVETVVKKERKRQAPAPFTTSTLQQEANKRLGYRTRRTMSIAQQLYEGISLGKEGTVGLI TYMRTDSKRTSPVAQAEASKFLTETFGAEFASKSARHFKNQEDAQDAHEAIRPTSIYRTP ESLKRSLTSEQFKLYKLIWSRFAASEMTPAVFDTVRADIVQNGVMYRTTGSKMKFAGFTK VYDAGSDKSVELPDLAEGDNVKLSKQDNKQHFTLPPARYTEASLVHALEENGVGRPSTYA PTIDTIQRRYYVKLEGRSIVPTELGEIVNNLVGKFFPDIVNVDFTAQLENDLDHVEEGKK NWVKVVDEYYKPFSKELEKADSEIEKVQIKDEPAGFNCDICGAPMVIKMGRYGKFYACSR FPDCRNTKAIVKEIGVVCPKCGKGQIVEKKSKRGRKFFGCSNYPDCDFVSWDKPVGRDCP NDGHFLVEKKTKKGLVVQCPNGDYKEEREESENSK >gi|260196066|gb|ACQN01000001.1| GENE 58 61909 - 62757 631 282 aa, chain - ## HITS:1 COG:lin1313 KEGG:ns NR:ns ## COG: lin1313 COG0758 # Protein_GI_number: 16800381 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Listeria innocua # 1 278 1 282 286 188 36.0 1e-47 MRMTIKEFLLRLKLERGIGYQKSLAILTKLTSLSAVNLADLETLPEQIKELAIKAYSNPK HPHTIDLLTKQCKIISFFDKEYPDKLRQIYRPPLLLFAKGDISLLKKPITTIVGARQAGS YTQQALDAWVPRLSQDYVIASGLAKGADRFAHETALKYHGKTIAVVGNGLNHFYPKENQL LQLEIIKHGLLISEYLPDTPPRPFRFPERNRILAGLSDNVIVTEAKSESGSLITANYALY ENRNIFALPGSVFSPLSQGPNELIKAGACPLLNLETFYDNIH >gi|260196066|gb|ACQN01000001.1| GENE 59 62822 - 63715 644 297 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851133|ref|ZP_05556522.1| ## NR: gi|256851133|ref|ZP_05556522.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 297 1 297 297 478 100.0 1e-133 MFAETTSLTESIKNQTLTANRKIYAKVDGDEDFQLVHQDRATLTYDEKVSIENNQRKFTL DKEVSSEWPNYTMPKKEGYTAFLTDETGQKEEKLADGIIPKSEVTLTSLDNTNLDRNYYI IYYPDERTLSVEYIDKTTNEILSKDSYSGKSGEKITLNIVNPDKNKYSIDNNIIPSSYTF TGDSNQQVKIYLKDKNSNSKKEEEKRNKITSPNINLKENPKTNGSLPDTYLNDDDKAISL YTMPNRKKAVMKNKKNKRNSSFKKAELNFNQCSLIVLGTVIIISSFFICKIKLKSEV >gi|260196066|gb|ACQN01000001.1| GENE 60 64259 - 64687 480 142 aa, chain + ## HITS:1 COG:SA0906 KEGG:ns NR:ns ## COG: SA0906 COG0454 # Protein_GI_number: 15926640 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 20 142 17 140 144 77 36.0 7e-15 MKIQTTKDIRSTLYQQILDLRKEVFIKEQHVPANLELKDEQGPIYYGGLINNNLVCCARV KEEHDKTWHIQRVATKATFRGQGLNSQLIKRIENDAQAKGISTLILGAQDQAQGFYLKLG FKVVGDAFIDAGISHHMMQKKI >gi|260196066|gb|ACQN01000001.1| GENE 61 64734 - 65492 890 252 aa, chain - ## HITS:1 COG:BS_rnh KEGG:ns NR:ns ## COG: BS_rnh COG0164 # Protein_GI_number: 16078669 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Bacillus subtilis # 1 248 4 254 255 225 49.0 8e-59 MSIKEIKEILQGEVDSETLALLQKDERKGVQKLLESYNKRLAKLAKAKAAFMNRFQYEQK AWKAGSIVAGVDEVGRGPLAGPVVTAAVILDDSFDLVEVNDSKKLSPKKRLELYPQILDK AVAVGIGVGSPELIDRINIYEADRVAMAQAVNNLAIKPDLLLVDAMNVPVDIKQIELIKG DSKSNSIAAASIIAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHIAALKEFGATPIHRR SFSPVSEYDFNK >gi|260196066|gb|ACQN01000001.1| GENE 62 65489 - 66331 880 280 aa, chain - ## HITS:1 COG:L128951 KEGG:ns NR:ns ## COG: L128951 COG1161 # Protein_GI_number: 15673276 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Lactococcus lactis # 1 278 1 277 282 261 43.0 9e-70 MAIQWYPGHMNKARVQLEDKLSLLDVIVEVVDARIPASSRNPLISDIVGDKPHIIILNKA DLADPNEINKWEAKLKSDGKFVLKLDAQHNTNMAPLFKLIKLAAKDRIDKLEAKGASNPT IRICLVGIPNCGKSTIINRLVGRNVAIVGDRPGVTKGQSWLKTSESVQILDTPGILWPKF EDQAVGFRLAALGSIKESVFHADDVALFVMEYLKENYFKSLVKFSRLSEQSVNDLPLPEL LLAMTEKYGMRDDYEKMSLFLLNQLRKGRLGRINLEKVEA >gi|260196066|gb|ACQN01000001.1| GENE 63 66451 - 67227 971 258 aa, chain - ## HITS:1 COG:no KEGG:lhv_1070 NR:ns ## KEGG: lhv_1070 # Name: not_defined # Def: Na+/H+ antiporter # Organism: L.helveticus # Pathway: not_defined # 1 257 271 530 530 263 51.0 4e-69 MVFVGNQLSNIFTDVLNGSVFVILGLVLIRLLEEDIFNAQTIMAILVGAFLYVINVLVRY FYTFLTEFRHNQKRAWTFSLGGIHGAVTFALAYTLTEETIKLSDIHFALLASSTLIILSM VVPTFVFRFLLPKKVADLDQIKEMRKVRKNMVEYAMLELDKIYLPEPLRRQLLYDLKAQL DEVSMKDFLKEMNTTVRRPDLKPHDREFRDEVYRYAFRLERNYLGQIAQSEQKYREGFLK LYRETLMAEILFLGSKED >gi|260196066|gb|ACQN01000001.1| GENE 64 67296 - 67994 428 232 aa, chain - ## HITS:1 COG:SA2228 KEGG:ns NR:ns ## COG: SA2228 COG0025 # Protein_GI_number: 15928018 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Staphylococcus aureus N315 # 8 227 24 237 692 97 28.0 2e-20 MVFQKAYFHKISVNYVALFFGMILGLVPLLNNLVEDFQSEVFMELIVAPLLFFEGQNTQL YYVKRFWKSIVGLTVVMIVIIELVAGFSLYYLTGMSMAFCFLLAAIATPTDATAGESVTH GLKVPRKVAYYLRNESLFNDASGLILLAMMVSWYVNKNLVIIESVGQLFISVVGGIVLGI ISSLLLAMIRQKTMQSSSLDNSNFSLNTPVQIAYLMTPFLLYFLLKKSMYQV >gi|260196066|gb|ACQN01000001.1| GENE 65 68092 - 68316 317 74 aa, chain - ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 70 4 68 77 67 58.0 5e-12 MAYRESFYRFLMTQRNPDSHDEIAEFANNAQHDQQFPKQEQDYEKLSDYLELNASYLPSM TIFDRAYELYKDNM >gi|260196066|gb|ACQN01000001.1| GENE 66 68424 - 69266 1098 280 aa, chain - ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 276 1 274 279 202 40.0 7e-52 MPKIKVITDSSVQLSPEEIEKYDITVVPLSITIDDKTYVDGEDITRKDFIQKMDSANELP KTSQPAIGRFVDEFKKLAADGSQVLGIFMAKCLSGTVDAARQASELVDFDVTIFDSGYTD RAMGFEVLEAAKMAQADKGLDEIIARLKQMQDQMHLEMMVPDLTNIIKGGRLGALAGRVA TLLNIRLFLEMTTNVLNIKAKGRGKKFTKKFNQDLIELVKNTPNVKHLGISYVDTPDDME ELANELKEINPDMDILIQETSPIIITHAGHGAYAVMFYSE >gi|260196066|gb|ACQN01000001.1| GENE 67 69415 - 70080 549 221 aa, chain + ## HITS:1 COG:lin1978 KEGG:ns NR:ns ## COG: lin1978 COG1272 # Protein_GI_number: 16801044 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Listeria innocua # 21 221 10 210 210 175 51.0 5e-44 MNFKKIWQKPQHQPKVIPLLDNIFSAITHGIGFGLAVTALVLLIIRAASTHSPLRVVTFS IYGASLVFLYLFSTLYHSLIYTKARKVFQIFDHSSIFLSIAGCYTPYSLVAIGGIKGWLI FGIIWGITVFGILYYILAKNKNSIIEVIMYIAMGWLVIFSAPQLYSYLGTTGFWLLVAGG ISYTIGALFYSMIGVPMMHTVWHLFVLAGSILMFFSVLFYV >gi|260196066|gb|ACQN01000001.1| GENE 68 70144 - 70626 417 160 aa, chain - ## HITS:1 COG:no KEGG:BcerKBAB4_5408 NR:ns ## KEGG: BcerKBAB4_5408 # Name: not_defined # Def: hypothetical protein # Organism: B.weihenstephanensis # Pathway: not_defined # 4 160 8 171 190 73 29.0 3e-12 MSLKFYKIDSDYLCQLSKIDKNIKINHGNNQRPYVGIIVQENSQKYFIPMGSPKPKHKYM KNNLTFFKIQHNNKFLGVLNINNMLPVKKGLYQEIIFDDENEKYRYLLYNQWRIINKYED KIIHNSHILYRLITTEKEKHINLQKLCPDFLRLEEFCKGF >gi|260196066|gb|ACQN01000001.1| GENE 69 70850 - 72010 1293 386 aa, chain - ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 2 386 7 392 394 330 46.0 3e-90 MKALPVVQTLTQAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPEEVKQLFERSIDTGIQ HGTVTVLYNDDSYEITTFRTESGYQDYRRPDHVEFVQNLEEDLKRRDFTINALAMDEYGN IHDLFNGLDDLNQGLIKAVGDPEKRFNEDALRMMRAVRFMSQLKFSLEEKTRQAICDHHE LLSKISVERIREEFVKMCVGPHARSAFQVFLDTQLSEEVPDFRGKKEQLSVFPSLTFSPS TEASVWAIIAILLKLPNEQIPAFMRDWKNSNQMARNVEEIVFFFDLLSDHSPSDYELFLA GQDTVMSACDVARILGQPVNSEAMIDRYVALPIKNNKELVIDGSTLIEWGIKPGPSLGEM LAKITEAVVDGKVANEEEAIKNFIAE >gi|260196066|gb|ACQN01000001.1| GENE 70 72126 - 73031 631 301 aa, chain + ## HITS:1 COG:lin2023 KEGG:ns NR:ns ## COG: lin2023 COG1284 # Protein_GI_number: 16801089 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 18 298 10 288 288 229 43.0 6e-60 MKVTNLKFKITPSFIIELIMIALGSAIYGLSINMISIPNQLTDGGLSGISLLLFHWWKVN LGFSTLILNIPLILIGFRFLGKKLMIETLWGTICLSFFLNFWRLIPIINQLNLEHDLLLA AISAGLLSGLGLGIVFRYNGTTGGSDIIARILQQEKDIKSGKTFFIIDVIVLVLSLSYID IRHIMYTLIASYIATTLIDIVQQGGNKAKAVFIISDKYEEIAKMIDLELDRGYSFLNGEG GYDRSQKHIIYCIVANYEIQAVKAIVLREDPKAFMTIFDANEALGEGMSYNRKKRNFFIR R >gi|260196066|gb|ACQN01000001.1| GENE 71 74081 - 75451 1513 456 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 4 448 2 442 454 218 33.0 2e-56 MQEKIVIIGASHGGHEAAIELLDKYQGLDVTIYEAGDFVSFMSCGMKLFLEQKTTGINDV RNFAPEDLEARGGKVVSGHEVVEVNPQSKQITVKNIKNGELEQVHYDKLIISSGVNAANL PVPGNDLANIYLMRGYEAAQKIDAAKNNPNIKNVVVIGAGNGINAVEVMEKYGKNVTLID AGKRPLENYLPEEFTNVFASEMEKHHVNLMMETKVESFTGENGQVSKVVTDKGEVAADLV IIAAGIKPATDYLDGAIELNKMGYIQVDDYFRTSAADVYAIGDAIWPFSIPANTYAPNPS AVAARHEAQYLVDHLFEAKPSRPFPGLVGAQVLEVFDAHAAITGLNLRAMNFLKIDAKIS IYKDRIRPAYIPEDHNTKVLTYLIYNKASHQILGGGVLGGPAQVPLTNVLSLAIRQKLTL EDLVEQDFFFSPSYDRQWNLLNLAAKDALEYKRFDR >gi|260196066|gb|ACQN01000001.1| GENE 72 75684 - 76745 963 353 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851145|ref|ZP_05556534.1| ## NR: gi|256851145|ref|ZP_05556534.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 353 1 353 353 642 100.0 0 MDMNKGNVLPEGNDLLNGLFQVQDYLNKINDRVTNVMNLEKDRIELQQSNLKKKITTEEI TSDMGKLMQVFLVCLFFGYVFTSFVYPMVNPKTTWSGVFWGIVIGAVSIGIPLVLLQDKY KNKFKKTKIGFLIFDFLFEFALFFSYPNVLIWVVAILGHFVGLIVVYLYCNNYNSKVASE NAKLTAQDEDHNQAARARNAKIDQQCAILSTEITAIKNEMQEKTASWYPVDYYSLDSVAH FISILKNHEAENIKEMVKVFKEDAYRDNVLNDQMVMKQQLDDSLAAQRENLQNQQLLAQR QQEMVQLQKKSNMIQMANAIASMVTARNTSQLKDSAKNIADNTKKIVDNTTWY >gi|260196066|gb|ACQN01000001.1| GENE 73 76783 - 77178 526 131 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851146|ref|ZP_05556535.1| ## NR: gi|256851146|ref|ZP_05556535.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 2 131 1066 1195 1195 179 100.0 6e-44 ASEDAKKSDDTKPSEDSKKSDDTKSSEDAKKSEEVKATEEPADIKAPEVKPVVIAPAQEV ITSQKKVAVSTDKLTSAALTQRTVKMPIKSRVEEHYGKQLPQTGDNENVLAAMGSILAGL GMFVGFKRKKN Prediction of potential genes in microbial genomes Time: Wed May 25 13:36:22 2011 Seq name: gi|260196065|gb|ACQN01000002.1| Lactobacillus jensenii 115-3-CHN cont1.2, whole genome shotgun sequence Length of sequence - 16895 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 7, operones - 5 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 3096 4741 ## LJ0437 hypothetical protein - Prom 3232 - 3291 4.7 - Term 3175 - 3221 1.0 2 2 Tu 1 . - CDS 3295 - 3732 532 ## LJ1313 hypothetical protein - Prom 3862 - 3921 2.6 3 3 Op 1 . - CDS 3954 - 5225 1346 ## LJ1313 hypothetical protein 4 3 Op 2 . - CDS 5274 - 5975 1113 ## gi|297206014|ref|ZP_06923409.1| conserved hypothetical protein - Prom 6064 - 6123 12.7 - Term 6235 - 6280 11.6 5 4 Op 1 . - CDS 6302 - 7492 1305 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 6 4 Op 2 . - CDS 7480 - 8724 904 ## COG1409 Predicted phosphohydrolases 7 4 Op 3 . - CDS 8744 - 9871 1352 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 9893 - 9952 5.7 8 5 Op 1 . - CDS 10343 - 10768 521 ## Ldb1015 hypothetical protein - Prom 10789 - 10848 9.0 9 5 Op 2 . - CDS 10868 - 11434 511 ## COG4474 Uncharacterized protein conserved in bacteria - Prom 11520 - 11579 4.7 + Prom 11451 - 11510 7.2 10 6 Op 1 7/0.000 + CDS 11706 - 12218 289 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 11 6 Op 2 . + CDS 12219 - 14555 2940 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 14592 - 14636 10.1 - Term 14703 - 14740 -0.7 12 7 Op 1 . - CDS 14751 - 15560 903 ## COG2746 Aminoglycoside N3'-acetyltransferase 13 7 Op 2 6/0.000 - CDS 15574 - 16227 710 ## COG0177 Predicted EndoIII-related endonuclease 14 7 Op 3 . - CDS 16227 - 16862 652 ## COG3935 Putative primosome component and related proteins Predicted protein(s) >gi|260196065|gb|ACQN01000002.1| GENE 1 3 - 3096 4741 1031 aa, chain - ## HITS:1 COG:no KEGG:LJ0437 NR:ns ## KEGG: LJ0437 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 81 854 27 838 1000 101 24.0 1e-19 MKTNKLITSATIAVALLMASKTTTVKADVKTTDNNETQTKSTSSVDTATANVNLAQANEK LAQASADTAVDKANQTAAALEKAKAANDEANKQDAEDNATIKEAPDKITSAKSELAKAEE TKAAESAKTPELTQNADELKERLNKAQAEDDKANAQFDKTWANLRSKQAAYDTSYQEKAD KAQETADAAQKAAEEATGVVNTKKQAVSQAQAGVDAAQTKVNEANAELEKSNQAQKDAEA KLASAKAAVATAQAENDKAQAAVKTAQAGTQTAQAALDQAKSDKTAKDDAVSAAQQAFDD AQKAAEEATNRASDAAKKLAEANDAVATAQTNFDNAQAAVNDLQSKLQAAKTDLETAKMR YYEASRYFENTLTLSDEQVNVIKKYTQLAQASDDPLAYAVKAVNSDQFKSDMVPAIHISR NMNDYKSNDYDKLRIVNVMNLTHEQKLELAQFAADLLNQVRAQVGSKPVTVSETFMEAAD KIAAGYTADHRIISDDKGHDVPVITSVMGQYGFKDGGQYYEDMTNWYLGDQPKSDEQGNF YPLSDDEYEKYNKYEDGQWVFTGNYNISMDSLKSYVYYNILELVMTPDEWHHMSDLLGVL YQTDHANSEYFGISFNNLGTAEVSTHVITAPNSYLEHPEMFQAKLVSPIDKAQAKRDAAA ANEDINNETAKVTDLNAQLTVANDKMKALTSALTAAQAVAQKSSDDKANADQATNAAKSA METANDNLNAAKASQSEAGDHLTAAQTVLDNAQRSLSGAVTTANDAARTLSEAEKTAAES ETNAKSAQTQAQKASKAQADAQTALTTAQKTLDHANDEMATANAALTAANAKLADASRTL NDAKTALANYDAKHAQDKVALKEAQDAHQASIQASAITGFALNAARQFFEQADTALTANK KVVAKAQATIDNMNAQINAVNKAVSDAKARLESNKSVHDAYAIATVNNQDAQKALEKAQA DLAAAKQVLAEAQAKLTEAKKSEEAKKAEEAKPSEDSKKSEEAKPSEDSKKSDDTKSSED SKKSDDTKPSE >gi|260196065|gb|ACQN01000002.1| GENE 2 3295 - 3732 532 145 aa, chain - ## HITS:1 COG:no KEGG:LJ1313 NR:ns ## KEGG: LJ1313 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 2 143 56 195 509 84 32.0 2e-15 MIALLDGEGNYTGKYIPTNSNWKVYAKKTINGTTYYRLGTDKQWVPERFLQFKASETAKT VAPTKSETPSSTEEAISGIAHAPVINNNPGWMIALLDGEGNYTGKYISTNSNWKVFARKT INGRTYYRLGTDQQWAPASYLNLIK >gi|260196065|gb|ACQN01000002.1| GENE 3 3954 - 5225 1346 423 aa, chain - ## HITS:1 COG:no KEGG:LJ1313 NR:ns ## KEGG: LJ1313 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 197 348 58 195 509 79 34.0 2e-13 MIYGINYLKTYLNYLGYNLDDSPENKHVLETSIFGKTDSAELTASKMSSDELKNKKLITV KFVDENDKTPITKPLKIYVDKDAKSISGSVVDVINEHYLLPMFLTAQDEGLKIPISTHMP ISNESNRTGGKGAAISADGVVTLHQSGGMVVEKKDHKKTEAKENQPEKPKKISKEESFAG IAYVPEFAFNPFWKLPLVDGEGNYTGKNIATNSNWKILAKKTIDGEVYYRLGTDKQWISA DYVTVKSADQAKTETPAKTETKETPAKEAASQTKDSKEVAYTGVVYAPVINNNRGWKIAL LDGEGNYTGQFISTDSNWKIFAKKTMNGEDYYRLGTDKQWVPAKFVTVKSAQPVKTETPA KTETKETPAKETATQTKDSKEEAVSGVAYAPVINNNAGWMIALLDGEGNYTGKYIPTTVT GRY >gi|260196065|gb|ACQN01000002.1| GENE 4 5274 - 5975 1113 233 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|297206014|ref|ZP_06923409.1| ## NR: gi|297206014|ref|ZP_06923409.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] # 1 233 1 233 893 301 100.0 1e-80 MAHKHIEQSVKECQRFSIRKLSIGAASVLLATVAFMSTGVSSQVHAAETSEAATTQASSD AKLSDAKTKLQAALDSAKALKVTDEQKKQAGLDKAITDAEAAVKGSDINVVNTKLDELNK AVDVVKAEMAKATTTKADTSTAKADKETSTSSSTSTSASESKTSASESTSSSAAKATSDK SKESSSTEAKDEKSSESEEYPGPDDLPKGYHFMAVFVKDKDSGQFVFYSNSSD >gi|260196065|gb|ACQN01000002.1| GENE 5 6302 - 7492 1305 396 aa, chain - ## HITS:1 COG:BH2510 KEGG:ns NR:ns ## COG: BH2510 COG0452 # Protein_GI_number: 15615073 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Bacillus halodurans # 3 396 6 398 404 294 41.0 3e-79 MARIAVYLTGGIATYKAVSVVRNLQKLGHQVRVVMTKNAEKFVSSQTLAALTKEEVLDDL WGKENEAKIPHIELADWSELALVVPATADFLAKMAWGLADDAASTTILASNCPKIVVPAM NSHMLANPAVKRNLTQLKADGVVILEPKVGMLAEGYQGRGRMPEPDEITKFVCDSLSTPN TLQGKRVIVTAGGTREAVDPVRYLGNRSSGKMGIAIADEFAKAGAQVDLVVGNIDIAVPN NELIKIHQVSSTEDMLNQVEQLFDACDCLVMAAAPADYKIKNNFNQKIKKKPGQTNLILE LTQTPDILKTMGKKKDRQIVVGFAAETENLLVNAQTKLERKHVDMIVANDVSTGVFGSDK NQVYILQKGLEPVSWPEMTKKEIAKRLVSLISEKMK >gi|260196065|gb|ACQN01000002.1| GENE 6 7480 - 8724 904 414 aa, chain - ## HITS:1 COG:lin2791 KEGG:ns NR:ns ## COG: lin2791 COG1409 # Protein_GI_number: 16801852 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Listeria innocua # 18 363 46 402 443 160 32.0 3e-39 MLKNLLTQKENPKIWVISDTHLIANELHDKGWAFQKMQNTSVGKDLHYQQKALLAFTRKV LKEKPDVVVVTGDITFNGERLSMQRFAEIFAPLRRHGIKLLVLPGNHDIYDGWARKFKDD VQYRTDQVSPQDFKEIFYDSSYRYAAREDGSSLAYSVNLSPNYRLILADSNIYPMEYSLT HPHTHGRIDDEELAFIEGQIIEAESNHQHVLFFMHHNLYRHNAVIYHNFVLDNASQVKRL FNKYNVQAVFSGHIHAQSIKKAPDCSAYEVVTSCFSSTDQGYGEISLNDKQLCYKRYSFN MDDYLAPAEKHGHLNNYRQYLWDLFEQNNRYHLRYLDNMELADEEKAKIARFLGDMHWDY FVGKGGMSKEQIINSEEYRRSIEVRPKLKGYIDSLIVDSDNWNLKINWKNKWLE >gi|260196065|gb|ACQN01000002.1| GENE 7 8744 - 9871 1352 375 aa, chain - ## HITS:1 COG:SP0373 KEGG:ns NR:ns ## COG: SP0373 COG0116 # Protein_GI_number: 15900296 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Streptococcus pneumoniae TIGR4 # 1 374 1 378 385 370 48.0 1e-102 MTEKYTLYATMGAGFESTVSKELQKLGYQTRNENGRVFFEGGQEDIVKTNLWLRSADRVK ILLKEFKAVSFEQLYDEVYDYDWALLLPVDAAFPVQGRAVRSKLHSEPDVQSIVKKAIVD KMVKQYHRRGFLPETGNAFPLDIHIYKDVARLSLDTTGASLFKRGYRVEHGGAPLKETFA AGLLELTPFNGTHPLVDPMCGSGTLPIEAALLAKNIAPGMKREFSFDGFDWFDKKLHQAG VEQAQAQIKPLESTIWASDIDQSVLEYAKLNAHNAGVLQDIKFKQVAVKDFKTDLENGII ISNPPYGKRLKDRDGAHKLYEEMGQVLGSYKDFSQYYLTSDPDFEKYFGQKATKKRKLFN GNLRVDFYQFWANKR >gi|260196065|gb|ACQN01000002.1| GENE 8 10343 - 10768 521 141 aa, chain - ## HITS:1 COG:no KEGG:Ldb1015 NR:ns ## KEGG: Ldb1015 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 140 1 151 154 133 54.0 2e-30 MADLKDIKLSSQDILKKQFAHKMKGYDQEEVDKFLDQIISDYETYNSIIEDLYGKIGKLQ RELLESQRTAKEGAEVATQTVAPAPADDVKTYTPSGFKASPVQNQVPTNEISTNMELIQR VSTLERKVYNLEQRVFGMQNQ >gi|260196065|gb|ACQN01000002.1| GENE 9 10868 - 11434 511 188 aa, chain - ## HITS:1 COG:lin2003 KEGG:ns NR:ns ## COG: lin2003 COG4474 # Protein_GI_number: 16801069 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 177 1 176 181 125 34.0 4e-29 MKRVWITGYRSYELGVFNQKDPKIKVIKYCLKNHLRSLLENGELDWVISGAQLGVEQWAL EATIELQKDYPVNVSMMVPYQEFSNRWNEDNQNHFLSLKEQVDFFGSTSNSPYQSPVQLR NYQNFMVQHTDSAIMIYDPEHPGKSKYDFELIQKYQQKRDYDLDLIDFYSLEDAANEYAE AHRPDYFN >gi|260196065|gb|ACQN01000002.1| GENE 10 11706 - 12218 289 170 aa, chain + ## HITS:1 COG:SA1282 KEGG:ns NR:ns ## COG: SA1282 COG3331 # Protein_GI_number: 15927030 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Staphylococcus aureus N315 # 1 169 34 205 208 182 55.0 3e-46 MTLEEQINESNKYYLEKNLCVVHKKPTPIQIVKVDYPKRSKAVIREAYFRQASTTDYNGV YKGYYLDFEAKETKNHRSFPLKNFHDHQIIHLSRCLKQNGICFTIIRFSSLGRYFIVPAS FVINAYKDPDKSSITLQEIETVSYEIQSGFRPTLPYLEAVDKFIADRSKS >gi|260196065|gb|ACQN01000002.1| GENE 11 12219 - 14555 2940 778 aa, chain + ## HITS:1 COG:lin2006 KEGG:ns NR:ns ## COG: lin2006 COG0744 # Protein_GI_number: 16801072 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 7 687 8 687 826 465 42.0 1e-130 MAENNHRSANNTAPKNSRMANLHHDNSKPKRRLWLQILKWFSIVVLLILVSGVGLFAYYA KDAPSISQDQLQSGGSSSFYTSDGKFLLSLGSEKRTYVKNSDIPQTLKDAVVSVEDKRFY QENLGIDPIRILGSIVSNAKSSGIAAGGSSITQQLVKLTVFSTAASQRTLKRKAQEAWLA IKVEHDYTKNQILEYYINKVYMNYGVYGMGTAADYYYGKSLKDLDLAQTALIAGMPNAPV AYDPYTYPKAAKYRRDIVLNAMYANGKITKAQLKAAKAESITQGLKTQQTSSESSIRKID DPYIKEAITEVKSKGYDPYNDNLKITLNIDQDAQNKLYELANGSTIPFSSSKMQVGATII NPSNGHVVAIIGGRNLPSVQLGLDRAVQTGRSTGSSIKPVLDYAPAIEYLNWSTAHYLED TKYVYPGTNIQLYDWDNKYMGKMTMRYALEQSRNVPAVKTLAKVGMKKASLFARKMNISV GSNQGLSVAIGANASSLQMAGAYAAFANEGVYYKPQFVSQIETADGVVHSYSSTGTRVMK KSTAYMITDMLKGVLTEGSGTNARTGLYEAGKTGTVKYSDDELVKYPSYASTPKDAWFVG YTKKYSIGVWTGYDNLSDGTITGQGQYASQYLYKYMMKYLMSDKENSNWTKPSNVVRKRI VKGSDPLEVTSSKSNSTSELFLRGHTPDGSNDDSDESSSSTSSSSSSKDNEVVTNRSSSS SSSSSSSSQGREDGSTSNSSSSQASSGGNPNNNQGTTTNNQTNNNNTAGQGQNNGGNN >gi|260196065|gb|ACQN01000002.1| GENE 12 14751 - 15560 903 269 aa, chain - ## HITS:1 COG:alr1528 KEGG:ns NR:ns ## COG: alr1528 COG2746 # Protein_GI_number: 17229020 # Func_class: V Defense mechanisms # Function: Aminoglycoside N3'-acetyltransferase # Organism: Nostoc sp. PCC 7120 # 28 262 33 264 274 152 36.0 9e-37 MTEKIIDTVTSMQDIKNLLIPHVAKTDSCIVHTSLSAFGYIPGGERIIVEALKDIFSEGN IVMAAQTADLSDPAEWGEPPATEQAQMIIKENMLPFDKKETPIHYIGKTPEYFRTSDGVK RTNHPLYSMCAWGRDADHICRNRKYDMPFDWDSPLGDLYKLDAKVIMLGTDFESCTALHL ADSTIDRPLLEETAPVKNEKGESEWITFKNVDELDKYDDFNEFGTYFEEHYPEAIVKIQI YKGFVRIIQMRQLVDSAQIYYRKKDLQNK >gi|260196065|gb|ACQN01000002.1| GENE 13 15574 - 16227 710 217 aa, chain - ## HITS:1 COG:SPy0929 KEGG:ns NR:ns ## COG: SPy0929 COG0177 # Protein_GI_number: 15674949 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Streptococcus pyogenes M1 GAS # 23 206 10 193 218 194 54.0 9e-50 MTTAKNKQVSHDEQLLNDEEALKVLNRILAMYPDAKGELNWDNVFHLVCAVAISAQTTDK MVNRVTPKLFSDYPTPADMAQADIKDLEADISKIGLFRSKAKHLKEMAQILVENFDGEVP KDKKLLMTLPGVGEKTANVVLAEAYGVPAIAVDTHVARISKKFKIVPENAKPHEIEKRLE EILPKEQWIKTHHAMIFFGRYTMPARAKDPNPYNYLK >gi|260196065|gb|ACQN01000002.1| GENE 14 16227 - 16862 652 211 aa, chain - ## HITS:1 COG:lin2009 KEGG:ns NR:ns ## COG: lin2009 COG3935 # Protein_GI_number: 16801075 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Listeria innocua # 11 203 13 198 239 117 35.0 1e-26 MKSFFNYRSFGFTTLTNALLASYSKLGLSDSAFLVIVQLEGFAQAKNYLPNENEIAARTN MTAGTVSTILQNLLENGYLELVQNRDKQGLINNEYSLEPLYIKLDQYLQDHYVETKANIN KQEINTSTNPVNELARQFEIEFGRLLSPIEREEISAWLTVDHYDPEVIKLALREAILSQV YNFKYVDRILLNWQKMGLKTPSDVTTYLGDR Prediction of potential genes in microbial genomes Time: Wed May 25 13:38:22 2011 Seq name: gi|260196064|gb|ACQN01000003.1| Lactobacillus jensenii 115-3-CHN cont1.3, whole genome shotgun sequence Length of sequence - 256808 bp Number of predicted genes - 268, with homology - 262 Number of transcription units - 95, operones - 59 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 19 - 1317 1411 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases - Term 1337 - 1376 1.5 2 2 Op 1 . - CDS 1395 - 1886 711 ## LCRIS_01170 hypothetical protein 3 2 Op 2 . - CDS 1870 - 4680 2373 ## COG1199 Rad3-related DNA helicases - Prom 4700 - 4759 2.8 4 3 Op 1 8/0.000 - CDS 4763 - 8323 3147 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 5 3 Op 2 . - CDS 8316 - 11771 3073 ## COG3857 ATP-dependent nuclease, subunit B - Prom 11914 - 11973 6.0 + Prom 11719 - 11778 6.4 6 4 Op 1 5/0.056 + CDS 11828 - 12742 792 ## COG1577 Mevalonate kinase 7 4 Op 2 5/0.056 + CDS 12742 - 13704 953 ## COG3407 Mevalonate pyrophosphate decarboxylase 8 4 Op 3 3/0.056 + CDS 13743 - 14831 979 ## COG1577 Mevalonate kinase 9 4 Op 4 . + CDS 14831 - 15853 1099 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 10 4 Op 5 . + CDS 15889 - 15984 60 ## 11 5 Op 1 . - CDS 16322 - 18667 2040 ## COG0144 tRNA and rRNA cytosine-C5-methylases 12 5 Op 2 . - CDS 18657 - 19379 479 ## lhv_1281 hypothetical protein - Prom 19409 - 19468 3.8 + Prom 19318 - 19377 7.5 13 6 Op 1 . + CDS 19466 - 20044 650 ## COG0681 Signal peptidase I 14 6 Op 2 . + CDS 20115 - 20300 225 ## LCRIS_01185 hypothetical protein + Term 20302 - 20361 8.1 - Term 20300 - 20341 6.5 15 7 Op 1 . - CDS 20350 - 21036 503 ## COG1266 Predicted metal-dependent membrane protease 16 7 Op 2 . - CDS 21097 - 21855 501 ## gi|256851174|ref|ZP_05556563.1| predicted protein 17 7 Op 3 . - CDS 21870 - 22667 657 ## LBA1187 hypothetical protein 18 7 Op 4 . - CDS 22682 - 23494 617 ## gi|256851176|ref|ZP_05556565.1| predicted protein 19 7 Op 5 8/0.000 - CDS 23495 - 24196 190 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 20 7 Op 6 . - CDS 24196 - 24564 450 ## COG1725 Predicted transcriptional regulators - Prom 24794 - 24853 10.2 - Term 24775 - 24825 1.1 21 8 Op 1 . - CDS 24858 - 26096 1707 ## COG2195 Di- and tripeptidases 22 8 Op 2 9/0.000 - CDS 26113 - 26910 960 ## COG0327 Uncharacterized conserved protein 23 8 Op 3 5/0.056 - CDS 26903 - 27592 722 ## COG2384 Predicted SAM-dependent methyltransferase - Prom 27634 - 27693 6.6 - Term 27643 - 27695 9.6 24 9 Op 1 31/0.000 - CDS 27696 - 28790 1365 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 25 9 Op 2 . - CDS 28803 - 30590 1424 ## COG0358 DNA primase (bacterial type) - Term 30603 - 30639 -0.7 26 9 Op 3 19/0.000 - CDS 30642 - 32708 2400 ## COG0751 Glycyl-tRNA synthetase, beta subunit 27 9 Op 4 3/0.056 - CDS 32701 - 33618 1028 ## COG0752 Glycyl-tRNA synthetase, alpha subunit - Prom 33791 - 33850 4.2 - Term 33640 - 33673 4.0 28 10 Op 1 16/0.000 - CDS 33862 - 34617 516 ## COG1381 Recombinational DNA repair protein (RecF pathway) 29 10 Op 2 6/0.000 - CDS 34617 - 35525 943 ## COG1159 GTPase 30 10 Op 3 1/0.278 - CDS 35509 - 35931 522 ## COG0295 Cytidine deaminase 31 10 Op 4 17/0.000 - CDS 35931 - 36455 565 ## COG0319 Predicted metal-dependent hydrolase 32 10 Op 5 1/0.278 - CDS 36455 - 37408 1069 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 33 10 Op 6 . - CDS 37429 - 37890 394 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 - Term 37910 - 37950 7.3 34 11 Op 1 . - CDS 37961 - 38137 292 ## PROTEIN SUPPORTED gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 35 11 Op 2 . - CDS 38100 - 38219 217 ## PROTEIN SUPPORTED gi|239632784|ref|ZP_04675815.1| SSU ribosomal protein S21P - Prom 38254 - 38313 8.4 + Prom 38199 - 38258 4.8 36 12 Tu 1 . + CDS 38283 - 39107 1082 ## COG1806 Uncharacterized protein conserved in bacteria + Term 39112 - 39159 5.1 - Term 39098 - 39145 -0.9 37 13 Tu 1 . - CDS 39158 - 40036 937 ## COG1284 Uncharacterized conserved protein 38 14 Op 1 5/0.056 - CDS 40114 - 40644 661 ## COG0225 Peptide methionine sulfoxide reductase 39 14 Op 2 . - CDS 40644 - 41084 515 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase - Prom 41104 - 41163 1.9 - Term 41119 - 41156 2.0 40 15 Op 1 . - CDS 41167 - 41379 165 ## gi|256851196|ref|ZP_05556585.1| predicted protein 41 15 Op 2 . - CDS 41404 - 41742 257 ## TherJR_0530 transcriptional modulator of MazE/toxin, MazF 42 15 Op 3 . - CDS 41736 - 41984 260 ## gi|256851198|ref|ZP_05556587.1| predicted protein - Prom 42070 - 42129 9.9 - Term 42181 - 42217 -0.3 43 16 Tu 1 . - CDS 42227 - 42412 142 ## gi|260664316|ref|ZP_05865169.1| predicted protein - Prom 42533 - 42592 5.7 - Term 42710 - 42747 2.0 44 17 Tu 1 . - CDS 42758 - 44344 1610 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 44408 - 44467 5.7 - Term 44445 - 44476 1.1 45 18 Op 1 . - CDS 44494 - 44826 208 ## MGAS10270_Spy1407 putative cytoplasmic protein 46 18 Op 2 . - CDS 44826 - 45092 402 ## gi|256851202|ref|ZP_05556591.1| predicted protein - Prom 45201 - 45260 9.2 - Term 45223 - 45272 10.9 47 19 Op 1 13/0.000 - CDS 45277 - 47109 2237 ## COG0173 Aspartyl-tRNA synthetase 48 19 Op 2 . - CDS 47127 - 48407 1558 ## COG0124 Histidyl-tRNA synthetase - Prom 48428 - 48487 3.7 - Term 48436 - 48477 2.4 49 20 Op 1 7/0.000 - CDS 48674 - 49114 561 ## COG1490 D-Tyr-tRNAtyr deacylase 50 20 Op 2 . - CDS 49114 - 51348 2698 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 51 20 Op 3 . - CDS 51370 - 51744 393 ## LGAS_0856 hypothetical protein 52 20 Op 4 . - CDS 51789 - 52733 1515 ## PROTEIN SUPPORTED gi|238854674|ref|ZP_04645004.1| ribosomal protein L11 methyltransferase - Prom 52766 - 52825 4.5 53 21 Tu 1 . + CDS 52799 - 53305 520 ## COG2606 Uncharacterized conserved protein + Term 53321 - 53383 11.2 - Term 53319 - 53358 3.6 54 22 Op 1 . - CDS 53381 - 54739 1542 ## COG2966 Uncharacterized conserved protein 55 22 Op 2 1/0.278 - CDS 54739 - 55557 590 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase - Prom 55656 - 55715 8.4 - Term 55627 - 55671 4.2 56 23 Op 1 6/0.000 - CDS 55731 - 57287 1925 ## COG3051 Citrate lyase, alpha subunit 57 23 Op 2 6/0.000 - CDS 57259 - 58173 1316 ## COG2301 Citrate lyase beta subunit 58 23 Op 3 5/0.056 - CDS 58174 - 58467 512 ## COG3052 Citrate lyase, gamma subunit 59 23 Op 4 . - CDS 58457 - 59512 1197 ## COG3053 Citrate lyase synthetase - Prom 59604 - 59663 6.9 + Prom 59515 - 59574 9.7 60 24 Tu 1 . + CDS 59706 - 60659 785 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain + Term 60666 - 60708 4.1 - Term 60533 - 60586 8.1 61 25 Op 1 . - CDS 60660 - 61451 735 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 62 25 Op 2 . - CDS 61498 - 62421 1312 ## COG0039 Malate/lactate dehydrogenases 63 25 Op 3 . - CDS 62450 - 63586 1404 ## COG2055 Malate/L-lactate dehydrogenases - Prom 63623 - 63682 7.2 - Term 63623 - 63667 5.7 64 26 Op 1 . - CDS 63684 - 64223 315 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 65 26 Op 2 . - CDS 64274 - 65461 1134 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 65494 - 65553 6.9 - Term 65523 - 65561 2.1 66 27 Tu 1 . - CDS 65584 - 67038 1682 ## COG0471 Di- and tricarboxylate transporters - Prom 67114 - 67173 9.1 - Term 67243 - 67292 8.3 67 28 Tu 1 . - CDS 67313 - 68734 1323 ## COG0471 Di- and tricarboxylate transporters - Prom 68823 - 68882 5.5 - Term 68850 - 68890 5.4 68 29 Op 1 . - CDS 68904 - 70295 2110 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 69 29 Op 2 . - CDS 70313 - 71716 1784 ## COG0114 Fumarase - Prom 71761 - 71820 6.2 - Term 71840 - 71875 5.3 70 30 Op 1 32/0.000 - CDS 71888 - 72589 998 ## COG2011 ABC-type metal ion transport system, permease component 71 30 Op 2 10/0.000 - CDS 72582 - 73640 1269 ## COG1135 ABC-type metal ion transport system, ATPase component 72 30 Op 3 . - CDS 73650 - 74501 987 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen - Prom 74530 - 74589 2.6 + Prom 74762 - 74821 8.4 73 31 Tu 1 . + CDS 74894 - 75259 490 ## COG1970 Large-conductance mechanosensitive channel + Prom 75273 - 75332 9.1 74 32 Op 1 . + CDS 75374 - 75961 755 ## LGAS_0843 hypothetical protein 75 32 Op 2 . + CDS 75961 - 76824 671 ## LAF_1832 hypothetical protein + Term 76829 - 76878 7.4 - Term 76817 - 76866 7.4 76 33 Tu 1 . - CDS 76874 - 77020 78 ## - Prom 77058 - 77117 8.6 - Term 77112 - 77150 5.2 77 34 Tu 1 . - CDS 77157 - 78086 1048 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 78113 - 78172 6.3 78 35 Op 1 . - CDS 78196 - 78612 386 ## LJ0167 hypothetical protein 79 35 Op 2 16/0.000 - CDS 78621 - 79124 494 ## COG0262 Dihydrofolate reductase 80 35 Op 3 . - CDS 79134 - 80090 1009 ## COG0207 Thymidylate synthase - Prom 80195 - 80254 9.4 + Prom 80118 - 80177 6.6 81 36 Tu 1 . + CDS 80197 - 81063 1157 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Term 81090 - 81138 5.1 - Term 81085 - 81117 3.2 82 37 Op 1 3/0.056 - CDS 81124 - 82506 1589 ## COG1113 Gamma-aminobutyrate permease and related permeases 83 37 Op 2 . - CDS 82499 - 83899 1744 ## COG1113 Gamma-aminobutyrate permease and related permeases 84 38 Tu 1 . - CDS 84000 - 84701 538 ## COG1811 Uncharacterized membrane protein, possible Na+ channel or pump - Prom 84834 - 84893 8.4 + Prom 84735 - 84794 9.5 85 39 Tu 1 . + CDS 84875 - 86413 1452 ## SMU.739c hypothetical protein + Term 86573 - 86613 0.2 - TRNA 86553 - 86639 67.7 # Ser CGA 0 0 + Prom 86675 - 86734 6.9 86 40 Tu 1 . + CDS 86754 - 87323 272 ## LJ1417 hypothetical protein + Term 87332 - 87381 4.2 87 41 Tu 1 . - CDS 87832 - 88662 950 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 88726 - 88785 5.6 + Prom 88685 - 88744 7.5 88 42 Op 1 . + CDS 88779 - 89288 389 ## LAF_0389 hypothetical protein 89 42 Op 2 . + CDS 89352 - 91628 2223 ## COG0474 Cation transport ATPase + Term 91638 - 91685 12.1 - Term 91618 - 91675 7.8 90 43 Op 1 7/0.000 - CDS 91686 - 92213 739 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 91 43 Op 2 . - CDS 92231 - 94492 2003 ## COG0608 Single-stranded DNA-specific exonuclease 92 43 Op 3 . - CDS 94492 - 95202 768 ## COG3764 Sortase (surface protein transpeptidase) 93 43 Op 4 . - CDS 95204 - 97042 2065 ## COG0481 Membrane GTPase LepA - Prom 97064 - 97123 8.6 - Term 97169 - 97207 1.3 94 44 Op 1 31/0.000 - CDS 97219 - 98355 1690 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Term 98376 - 98417 -0.8 95 44 Op 2 29/0.000 - CDS 98427 - 100268 2286 ## COG0443 Molecular chaperone 96 44 Op 3 21/0.000 - CDS 100320 - 100901 759 ## COG0576 Molecular chaperone GrpE (heat shock protein) 97 44 Op 4 . - CDS 100915 - 101958 1063 ## COG1420 Transcriptional regulator of heat shock gene - Prom 102002 - 102061 5.2 98 45 Op 1 12/0.000 - CDS 102078 - 103016 564 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 99 45 Op 2 26/0.000 - CDS 103035 - 103922 849 ## COG0130 Pseudouridine synthase - Term 103930 - 103955 -0.5 100 45 Op 3 32/0.000 - CDS 103960 - 104316 444 ## COG0858 Ribosome-binding factor A 101 45 Op 4 . - CDS 104328 - 107027 3163 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 102 45 Op 5 . - CDS 107032 - 107343 482 ## PROTEIN SUPPORTED gi|227526109|ref|ZP_03956158.1| ribosomal protein L7/L12 103 45 Op 6 22/0.000 - CDS 107344 - 107619 331 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 104 45 Op 7 32/0.000 - CDS 107650 - 108756 723 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 105 45 Op 8 4/0.056 - CDS 108777 - 109286 503 ## COG0779 Uncharacterized protein conserved in bacteria 106 45 Op 9 5/0.056 - CDS 109349 - 113668 3690 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 107 45 Op 10 7/0.000 - CDS 113678 - 115375 1955 ## COG0442 Prolyl-tRNA synthetase 108 45 Op 11 12/0.000 - CDS 115395 - 116648 1255 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 109 45 Op 12 32/0.000 - CDS 116651 - 117457 811 ## COG0575 CDP-diglyceride synthetase 110 45 Op 13 19/0.000 - CDS 117469 - 118182 692 ## COG0020 Undecaprenyl pyrophosphate synthase 111 45 Op 14 33/0.000 - CDS 118186 - 118743 852 ## COG0233 Ribosome recycling factor 112 45 Op 15 24/0.000 - CDS 118743 - 119468 949 ## COG0528 Uridylate kinase - Prom 119527 - 119586 6.7 - Term 119539 - 119595 5.1 113 46 Op 1 38/0.000 - CDS 119596 - 120471 579 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 114 46 Op 2 . - CDS 120505 - 121287 1328 ## PROTEIN SUPPORTED gi|227526097|ref|ZP_03956146.1| 30S ribosomal protein S2 - Prom 121378 - 121437 3.9 115 47 Tu 1 . - CDS 121457 - 122467 770 ## COG4123 Predicted O-methyltransferase - Prom 122626 - 122685 5.2 + Prom 122418 - 122477 6.0 116 48 Tu 1 . + CDS 122531 - 123145 585 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 123149 - 123182 3.1 - Term 123135 - 123168 3.1 117 49 Op 1 35/0.000 - CDS 123175 - 124959 235 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 118 49 Op 2 . - CDS 124952 - 126547 179 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Prom 126632 - 126691 7.0 - Term 126735 - 126768 -0.4 119 50 Op 1 . - CDS 126793 - 127014 381 ## COG3763 Uncharacterized protein conserved in bacteria 120 50 Op 2 . - CDS 127032 - 127280 370 ## LCRIS_01293 hypothetical UPF0291 protein - Prom 127310 - 127369 8.7 + Prom 127335 - 127394 6.5 121 51 Tu 1 . + CDS 127419 - 128054 881 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 128144 - 128177 1.4 - Term 128376 - 128412 0.2 122 52 Tu 1 . - CDS 128463 - 129464 962 ## COG1609 Transcriptional regulators - Prom 129494 - 129553 7.8 - Term 129556 - 129615 7.1 123 53 Op 1 . - CDS 129677 - 131857 1167 ## COG3345 Alpha-galactosidase 124 53 Op 2 . - CDS 131871 - 133283 1522 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 133409 - 133468 9.0 - Term 133488 - 133561 9.0 125 54 Tu 1 . - CDS 133569 - 135515 2462 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 135687 - 135746 7.6 + Prom 135668 - 135727 9.4 126 55 Op 1 5/0.056 + CDS 135755 - 137206 1833 ## COG1621 Beta-fructosidases (levanase/invertase) 127 55 Op 2 . + CDS 137206 - 138186 753 ## COG1609 Transcriptional regulators + Term 138192 - 138224 4.2 - Term 138180 - 138212 4.2 128 56 Tu 1 . - CDS 138217 - 138864 746 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) - Prom 138906 - 138965 7.0 - Term 139264 - 139297 4.0 129 57 Op 1 2/0.111 - CDS 139303 - 139635 388 ## COG5294 Uncharacterized protein conserved in bacteria 130 57 Op 2 3/0.056 - CDS 139632 - 140300 270 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 131 57 Op 3 . - CDS 140315 - 142294 1195 ## COG4652 Uncharacterized protein conserved in bacteria - Prom 142348 - 142407 11.2 - Term 142392 - 142439 8.1 132 58 Op 1 33/0.000 - CDS 142448 - 142795 578 ## PROTEIN SUPPORTED gi|227526078|ref|ZP_03956127.1| 50S ribosomal protein L19 133 58 Op 2 30/0.000 - CDS 142902 - 143633 1002 ## COG0336 tRNA-(guanine-N1)-methyltransferase 134 58 Op 3 12/0.000 - CDS 143623 - 144135 623 ## COG0806 RimM protein, required for 16S rRNA processing - Term 144151 - 144192 6.7 135 58 Op 4 23/0.000 - CDS 144206 - 144478 463 ## PROTEIN SUPPORTED gi|227526075|ref|ZP_03956124.1| ribosomal protein S16 - Prom 144506 - 144565 7.5 136 58 Op 5 8/0.000 - CDS 144568 - 145995 1989 ## COG0541 Signal recognition particle GTPase 137 58 Op 6 . - CDS 146000 - 146335 360 ## COG2739 Uncharacterized protein conserved in bacteria - Term 146359 - 146390 1.0 138 58 Op 7 . - CDS 146407 - 146640 245 ## gi|282933263|ref|ZP_06338650.1| hypothetical protein HMPREF0886_2732 - Prom 146672 - 146731 8.2 - Term 146716 - 146761 7.6 139 59 Op 1 35/0.000 - CDS 146763 - 148340 1196 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 140 59 Op 2 . - CDS 148346 - 149923 191 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 141 59 Op 3 . - CDS 149937 - 150755 460 ## LCRIS_00042 transcriptional regulator, XRE family 142 59 Op 4 . - CDS 150769 - 153336 1550 ## COG0515 Serine/threonine protein kinase - Prom 153530 - 153589 12.9 - Term 153747 - 153800 10.3 143 60 Op 1 . - CDS 153806 - 155230 1668 ## COG4690 Dipeptidase 144 60 Op 2 10/0.000 - CDS 155241 - 156545 562 ## PROTEIN SUPPORTED gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 145 60 Op 3 6/0.000 - CDS 156545 - 160114 3313 ## COG1196 Chromosome segregation ATPases 146 60 Op 4 . - CDS 160124 - 160816 650 ## COG0571 dsRNA-specific ribonuclease - Prom 160836 - 160895 4.2 - Term 160857 - 160883 -0.6 147 60 Op 5 3/0.056 - CDS 160901 - 162661 2135 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 162731 - 162790 11.3 - Term 162773 - 162817 10.2 148 61 Tu 1 5/0.056 - CDS 162849 - 164621 1982 ## COG0747 ABC-type dipeptide transport system, periplasmic component 149 62 Op 1 49/0.000 - CDS 164961 - 165875 992 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 150 62 Op 2 6/0.000 - CDS 165890 - 166849 1286 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 151 62 Op 3 44/0.000 - CDS 166851 - 167822 738 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 152 62 Op 4 . - CDS 167823 - 168800 1073 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component - Prom 168862 - 168921 6.6 153 63 Op 1 3/0.056 - CDS 168954 - 169193 408 ## COG0236 Acyl carrier protein 154 63 Op 2 . - CDS 169251 - 170255 1380 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 155 63 Op 3 4/0.056 - CDS 170264 - 172288 1806 ## COG1200 RecG-like helicase 156 63 Op 4 9/0.000 - CDS 172293 - 173909 2064 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 157 63 Op 5 . - CDS 173969 - 174331 480 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 174364 - 174423 7.1 + Prom 174415 - 174474 5.7 158 64 Tu 1 . + CDS 174508 - 174693 313 ## PROTEIN SUPPORTED gi|227526050|ref|ZP_03956099.1| 50S ribosomal protein L28 + Term 174721 - 174766 13.2 - Term 174716 - 174747 3.4 159 65 Op 1 6/0.000 - CDS 174764 - 175438 713 ## COG1564 Thiamine pyrophosphokinase 160 65 Op 2 10/0.000 - CDS 175425 - 176087 706 ## COG0036 Pentose-5-phosphate-3-epimerase 161 65 Op 3 7/0.000 - CDS 176121 - 177008 783 ## COG1162 Predicted GTPases 162 65 Op 4 17/0.000 - CDS 177005 - 178999 2112 ## COG0515 Serine/threonine protein kinase 163 65 Op 5 3/0.056 - CDS 178996 - 179745 519 ## COG0631 Serine/threonine protein phosphatase 164 65 Op 6 20/0.000 - CDS 179751 - 181064 1106 ## COG0144 tRNA and rRNA cytosine-C5-methylases 165 65 Op 7 4/0.056 - CDS 181057 - 182001 1018 ## COG0223 Methionyl-tRNA formyltransferase 166 65 Op 8 3/0.056 - CDS 182018 - 184411 2162 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Term 184421 - 184458 5.1 167 66 Op 1 25/0.000 - CDS 184466 - 184684 365 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 168 66 Op 2 . - CDS 184688 - 185302 881 ## COG0194 Guanylate kinase - Prom 185325 - 185384 4.1 + Prom 185400 - 185459 8.8 169 67 Tu 1 . + CDS 185515 - 185820 439 ## gi|256851323|ref|ZP_05556712.1| predicted protein + Term 185904 - 185944 -0.2 170 68 Op 1 . - CDS 185875 - 187560 1869 ## COG0497 ATPase involved in DNA repair 171 68 Op 2 3/0.056 - CDS 187574 - 188386 744 ## COG1189 Predicted rRNA methylase 172 68 Op 3 22/0.000 - CDS 188386 - 189252 1037 ## COG0142 Geranylgeranyl pyrophosphate synthase 173 68 Op 4 14/0.000 - CDS 189254 - 189496 428 ## COG1722 Exonuclease VII small subunit 174 68 Op 5 7/0.000 - CDS 189486 - 190847 1468 ## COG1570 Exonuclease VII, large subunit 175 68 Op 6 4/0.056 - CDS 190834 - 191685 930 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Term 191698 - 191727 1.2 176 68 Op 7 10/0.000 - CDS 191732 - 192133 460 ## COG0781 Transcription termination factor 177 68 Op 8 4/0.056 - CDS 192133 - 192579 587 ## COG1302 Uncharacterized protein conserved in bacteria 178 68 Op 9 10/0.000 - CDS 192604 - 193173 719 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 179 68 Op 10 . - CDS 193242 - 194348 1246 ## COG0006 Xaa-Pro aminopeptidase - Term 194361 - 194399 6.1 180 69 Op 1 32/0.000 - CDS 194414 - 194713 511 ## PROTEIN SUPPORTED gi|227526027|ref|ZP_03956076.1| 50S ribosomal protein L27 181 69 Op 2 . - CDS 194732 - 195094 603 ## PROTEIN SUPPORTED gi|227526026|ref|ZP_03956075.1| ribosomal protein L21 - Prom 195152 - 195211 5.7 182 70 Op 1 . - CDS 195222 - 195797 487 ## COG1814 Uncharacterized membrane protein 183 70 Op 2 6/0.000 - CDS 195897 - 197300 1703 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 184 70 Op 3 19/0.000 - CDS 197300 - 197743 402 ## COG0822 NifU homolog involved in Fe-S cluster formation 185 70 Op 4 24/0.000 - CDS 197740 - 198933 881 ## COG0520 Selenocysteine lyase 186 70 Op 5 41/0.000 - CDS 198923 - 200152 1314 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 187 70 Op 6 . - CDS 200164 - 200955 1064 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component - Prom 201165 - 201224 10.2 - Term 201445 - 201496 2.1 188 71 Op 1 . - CDS 201605 - 201784 188 ## gi|256851341|ref|ZP_05556730.1| predicted protein 189 71 Op 2 . - CDS 201825 - 202118 236 ## gi|256851342|ref|ZP_05556731.1| predicted protein 190 71 Op 3 . - CDS 202162 - 202368 261 ## gi|256851343|ref|ZP_05556732.1| predicted protein - Prom 202453 - 202512 6.7 - Term 202484 - 202518 2.2 191 72 Op 1 . - CDS 202529 - 202711 272 ## gi|282933208|ref|ZP_06338595.1| glycyl-tRNA synthetase alpha subunit 192 72 Op 2 . - CDS 202751 - 202888 137 ## - Prom 202927 - 202986 6.3 - Term 202919 - 202960 -0.9 193 73 Tu 1 . - CDS 203117 - 203350 323 ## FI9785_830 hypothetical protein - Prom 203471 - 203530 5.0 194 74 Op 1 . - CDS 203534 - 203776 294 ## FI9785_830 hypothetical protein 195 74 Op 2 . - CDS 203819 - 204007 283 ## gi|256851347|ref|ZP_05556736.1| predicted protein - Prom 204127 - 204186 10.5 - Term 204473 - 204514 6.0 196 75 Op 1 . - CDS 204524 - 205582 1114 ## llmg_2082 bacteriophage lysin 197 75 Op 2 . - CDS 205582 - 205968 528 ## gi|282933202|ref|ZP_06338589.1| phage holin, LL-H family 198 75 Op 3 . - CDS 205943 - 206155 217 ## gi|256851350|ref|ZP_05556739.1| predicted protein 199 75 Op 4 . - CDS 206170 - 206559 364 ## gi|256851351|ref|ZP_05556740.1| predicted protein 200 75 Op 5 . - CDS 206546 - 206713 203 ## gi|256851352|ref|ZP_05556741.1| predicted protein 201 75 Op 6 . - CDS 206713 - 207126 492 ## gi|256851353|ref|ZP_05556742.1| predicted protein 202 75 Op 7 . - CDS 207132 - 209960 2599 ## gi|282933197|ref|ZP_06338584.1| hypothetical protein HMPREF0886_2665 203 75 Op 8 . - CDS 209887 - 210132 216 ## gi|256851355|ref|ZP_05556744.1| predicted protein 204 75 Op 9 4/0.056 - CDS 210142 - 213192 2796 ## COG4926 Phage-related protein 205 75 Op 10 . - CDS 213186 - 213929 468 ## COG4722 Phage-related protein 206 75 Op 11 . - CDS 213929 - 218341 4708 ## COG5283 Phage-related tail protein 207 75 Op 12 . - CDS 218357 - 218542 277 ## gi|256851359|ref|ZP_05556748.1| predicted protein 208 75 Op 13 . - CDS 218596 - 218931 391 ## gi|256851360|ref|ZP_05556749.1| predicted protein - Prom 218958 - 219017 1.8 209 76 Op 1 . - CDS 219055 - 219684 825 ## LC705_00882 phage-related major tail protein 210 76 Op 2 . - CDS 219688 - 220113 497 ## gi|256851362|ref|ZP_05556751.1| predicted protein 211 76 Op 3 . - CDS 220113 - 220514 557 ## gi|256851363|ref|ZP_05556752.1| predicted protein 212 76 Op 4 . - CDS 220514 - 220759 228 ## gi|256851364|ref|ZP_05556753.1| predicted protein 213 76 Op 5 . - CDS 220731 - 221144 415 ## gi|256851365|ref|ZP_05556754.1| predicted protein - Prom 221207 - 221266 3.9 214 77 Op 1 . - CDS 221388 - 222524 1481 ## LC705_00876 phage-related major head protein 215 77 Op 2 3/0.056 - CDS 222524 - 223078 526 ## COG3740 Phage head maturation protease 216 77 Op 3 . - CDS 223020 - 224354 1329 ## COG4695 Phage-related protein 217 77 Op 4 . - CDS 224372 - 224551 171 ## gi|256851370|ref|ZP_05556759.1| predicted protein 218 77 Op 5 4/0.056 - CDS 224529 - 226244 1734 ## COG4626 Phage terminase-like protein, large subunit 219 77 Op 6 . - CDS 226249 - 226686 404 ## COG3747 Phage terminase, small subunit - Prom 226762 - 226821 3.4 220 78 Tu 1 . - CDS 226919 - 227179 177 ## BCAH820_4388 HNH endonuclease - Prom 227279 - 227338 6.6 - Term 227936 - 227982 7.2 221 79 Op 1 . - CDS 228064 - 228321 365 ## gi|256851374|ref|ZP_05556763.1| predicted protein 222 79 Op 2 . - CDS 228324 - 228491 208 ## gi|256851375|ref|ZP_05556764.1| predicted protein 223 79 Op 3 . - CDS 228496 - 228981 594 ## gi|256851376|ref|ZP_05556765.1| predicted protein - Prom 229027 - 229086 6.6 224 80 Tu 1 . - CDS 229168 - 229440 112 ## gi|256851377|ref|ZP_05556766.1| predicted protein - Prom 229558 - 229617 5.0 225 81 Tu 1 . - CDS 229660 - 229779 90 ## - Prom 229980 - 230039 5.7 - Term 230420 - 230481 9.1 226 82 Tu 1 . - CDS 230535 - 230711 146 ## - Prom 230781 - 230840 6.2 227 83 Op 1 . - CDS 230864 - 231169 118 ## gi|256851378|ref|ZP_05556767.1| predicted protein 228 83 Op 2 . - CDS 231243 - 231548 460 ## gi|256851379|ref|ZP_05556768.1| predicted protein 229 83 Op 3 . - CDS 231538 - 231837 274 ## gi|256851380|ref|ZP_05556769.1| predicted protein 230 83 Op 4 . - CDS 231861 - 232379 433 ## gi|256851381|ref|ZP_05556770.1| predicted protein 231 83 Op 5 . - CDS 232459 - 232635 105 ## gi|260660805|ref|ZP_05861720.1| predicted protein 232 83 Op 6 . - CDS 232642 - 232911 266 ## gi|256851382|ref|ZP_05556771.1| predicted protein 233 83 Op 7 . - CDS 232937 - 233323 173 ## gi|256851383|ref|ZP_05556772.1| predicted protein 234 83 Op 8 . - CDS 233323 - 233679 411 ## FI9785_823 hypothetical protein 235 84 Op 1 . - CDS 234114 - 235442 1091 ## COG5545 Predicted P-loop ATPase and inactivated derivatives 236 84 Op 2 . - CDS 235435 - 236220 645 ## FI9785_817 hypothetical protein 237 84 Op 3 . - CDS 236223 - 236795 796 ## FI9785_815 putative single-stranded DNA-binding protein 238 84 Op 4 . - CDS 236820 - 237524 645 ## FI9785_814 hypothetical protein 239 84 Op 5 . - CDS 237524 - 238660 885 ## COG1061 DNA or RNA helicases of superfamily II - Prom 238817 - 238876 5.0 240 85 Tu 1 . - CDS 238879 - 239346 187 ## gi|256851390|ref|ZP_05556779.1| predicted protein - Prom 239453 - 239512 5.0 241 86 Op 1 . - CDS 239540 - 239803 204 ## gi|256851392|ref|ZP_05556781.1| predicted protein 242 86 Op 2 . - CDS 239796 - 240044 334 ## gi|256851393|ref|ZP_05556782.1| predicted protein - Prom 240258 - 240317 6.7 - Term 240329 - 240362 -0.9 243 87 Op 1 . - CDS 240446 - 240655 303 ## LJ1452b Lj928 prophage protein 244 87 Op 2 . - CDS 240679 - 241047 417 ## gi|256851395|ref|ZP_05556784.1| predicted protein 245 87 Op 3 . - CDS 241050 - 241223 223 ## gi|256851396|ref|ZP_05556785.1| predicted protein 246 87 Op 4 . - CDS 241235 - 241468 357 ## gi|256851397|ref|ZP_05556786.1| predicted protein - Prom 241505 - 241564 4.5 247 88 Op 1 . - CDS 241577 - 241762 173 ## gi|256851399|ref|ZP_05556788.1| predicted protein 248 88 Op 2 . - CDS 241763 - 242041 167 ## gi|256851400|ref|ZP_05556789.1| predicted protein 249 88 Op 3 . - CDS 242059 - 242328 332 ## gi|256851401|ref|ZP_05556790.1| predicted protein 250 88 Op 4 . - CDS 242343 - 242600 217 ## gi|256851402|ref|ZP_05556791.1| predicted protein 251 88 Op 5 . - CDS 242600 - 243376 980 ## COG3617 Prophage antirepressor - Prom 243397 - 243456 3.4 252 89 Tu 1 . - CDS 243793 - 243984 286 ## LSL_0744 phage antirepressor + Prom 243992 - 244051 9.7 253 90 Op 1 . + CDS 244274 - 244600 293 ## JDM1_0962 transcription regulator 254 90 Op 2 . + CDS 244554 - 244970 406 ## FI9785_804 hypothetical protein + Prom 244994 - 245053 5.2 255 91 Tu 1 . + CDS 245104 - 246231 803 ## COG0582 Integrase + Term 246255 - 246301 5.3 - Term 246696 - 246746 10.8 256 92 Op 1 7/0.000 - CDS 246758 - 247945 1495 ## COG0282 Acetate kinase 257 92 Op 2 . - CDS 247978 - 248976 1163 ## COG0827 Adenine-specific DNA methylase 258 92 Op 3 . - CDS 249041 - 249259 77 ## 259 92 Op 4 . - CDS 249177 - 249680 375 ## LGAS_1271 hypothetical protein 260 92 Op 5 . - CDS 249658 - 249870 167 ## gi|256851412|ref|ZP_05556801.1| predicted protein 261 92 Op 6 . - CDS 249857 - 250288 287 ## LGAS_1272 hypothetical protein 262 92 Op 7 . - CDS 250266 - 250595 447 ## LGAS_1273 competence protein ComGC 263 92 Op 8 24/0.000 - CDS 250606 - 251529 876 ## COG1459 Type II secretory pathway, component PulF 264 92 Op 9 . - CDS 251573 - 252556 828 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB - Prom 252587 - 252646 7.3 - Term 252604 - 252640 6.8 265 93 Tu 1 1/0.278 - CDS 252656 - 254269 1855 ## COG0531 Amino acid transporters - Prom 254383 - 254442 5.4 - Term 254423 - 254471 9.1 266 94 Tu 1 . - CDS 254490 - 255368 1146 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 255397 - 255456 6.2 + Prom 255337 - 255396 7.8 267 95 Op 1 . + CDS 255446 - 255967 568 ## LBUL_0608 integral membrane protein 268 95 Op 2 . + CDS 256044 - 256772 1194 ## COG0217 Uncharacterized conserved protein Predicted protein(s) >gi|260196064|gb|ACQN01000003.1| GENE 1 19 - 1317 1411 432 aa, chain - ## HITS:1 COG:lin2010 KEGG:ns NR:ns ## COG: lin2010 COG0017 # Protein_GI_number: 16801076 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Listeria innocua # 5 432 3 430 430 556 61.0 1e-158 MTDLISIKQAPEYVGKEVKMHVWLTDKRSSGKIMFLQLRDGTAFFQGVLLKKDVSEEKFD LAKSLRQEASFYITGVINEDERSHFGYEIKISDLELVSNTEDYPIGNKEHGIDFLLDHRH LWLRSRRPFAIMQIRNEMINATYDFFKKEGFIKFDAPILMNSAPEGTTELFHIEYFDNDA YLSQSGQLYAEVGAEAFGKVFTFGPTFRAEKSKTRRHLTEFWMIEPEMAWTHQDESLDVQ ERYISYLVKRVIENCEYELNILGRDVEKLRPAAEGNYTRLKYDDAVKMLQDAGRDFKWGD DFGAPDEAYISEQFDRPVFIMNYPTSIKPFYMKKDPENPKEYLCADMLAPEGYGEIVGGS EREENFDVLKAQIEEAGLNLDNYEWYLDLRRYGSVPHSGFGLGFERAITWICHLDHLREA IPFPRMINRMEP >gi|260196064|gb|ACQN01000003.1| GENE 2 1395 - 1886 711 163 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01170 NR:ns ## KEGG: LCRIS_01170 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 9 163 11 165 165 113 38.0 2e-24 MYLGNRIWKYVFAAVAAVVVLIIAFYTVLGLAAHGQAAGKVQAANRAVKYTAIKKVTAYY HLNRGVNSYAVKGQTAKGKTAYYIYLTKQKKGHYLLAKKGYSASQVTKKFSKQHSDTKAN GLNLGWYNNEAVWEIAYRKYNGKYGYAIYSFRTGKELSFIDNV >gi|260196064|gb|ACQN01000003.1| GENE 3 1870 - 4680 2373 936 aa, chain - ## HITS:1 COG:BH1691_2 KEGG:ns NR:ns ## COG: BH1691_2 COG1199 # Protein_GI_number: 15614254 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus halodurans # 258 909 37 696 716 226 29.0 2e-58 MSQALSDQVFAVVDLETTGTRRGQDRIIQFGCAIIKNRQIIKTYSFLINPKADIPQAVQN LTGIKPADVVNQPVFKNFATQIEDILQDTVFVAHNINFDLPFLNAELAANGFPKLRNRAI DTVELSKIAFPTLPSYRLSDLTHSLNLKHTNPHQADSDAYATASLLLKILDKLESLPQST LNTLTSLSKGLLRDTQFIFKEISEFTRQEKRPLSKKYLQIHSLVLKKQEHLLHSETAKKA IFPKTDEEKKRLFKGKIEFRPAQVNLINKLHAFFNNERKAILVEAPSGTGKSFSYLFSCF YNLYRGQKLVIATPTMILQNQLIEKDLPLALQVSGLDLSSQVVKASRHYLDLDGFEQSLK QKTDNQETLILKMKILIWLTETSTGDLDELHTTNFAAPYFAQVQHPGDARVGTVFAPYDF WNLARYRQEQADILITNQAYLANHYQDSIWGQNPYLIVDEAHRFSDIVMNSRNNSLQFES FWGMLSHLRNIILFGEDNIAQDYKNSPVITDLATKADGVIGDVVHAINDLQVYLYDKKDN AIARKILPNGHLQVAVESEAFTDLDKFLQLLTNLQNKIEEIRTIVNRLLGVLYQISDSFL PREEARLNELSEQVDLLDYYSEQAYLLSDLLNDHEQFSNCGLVLDVTNPADSLATNLNWM LLDSKFELEKIYSGFKKIVFISATLSNNGDFSFSKKNLSLTKVDCAEVYSNYNFKLEKQV LALSLTDPAAPSYPSDESYGDFVAPLLLNSIRKQDKVLVLFTNLEAISDVYSAIVTRPEF KDFELLAQGVTGSNEKIVKRFNVAKRAIILGANSFWEGVDFGQTKVNLVIATKLPFESPD QIEVKLRQTNLARQGIDVFNEDSLPRAILRLKQGMGRLIRSPKDSGIFALLDQRIWTSNY GPEFLKSLPVQLVQVNLDELEENIRKGYDKDNVSGK >gi|260196064|gb|ACQN01000003.1| GENE 4 4763 - 8323 3147 1186 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 4 1183 11 1230 1232 575 32.0 1e-163 MVNYTKEQEAAINTRGKDILVSASAGSGKTMVLAERVIKLIKNGTSLDNLLVITFTKAAA NEMKERIKRVLNDEIAKNNSRKLKRELLRAEVANISTIDSFCLDVVHRFYYVIGLDPSFS VLTDETQAALLKEKALRELEKKAFASPDNPYRVFYDNFAGDRDANGARELLLDLYNYAMA RPDYDLWLDGLAKDYEFADDLSEAPFFVKAIKPYLSKILLEMSNKVDKILSDPFNEATEL EKIIKDFSGFSKRLTRVEASLESDTFDQIRASLQNCQFTENPRKSSKWDEDLLDRYASLS QTRAELKDQIKSLFAAFFVADNEEQTAVMKQSSSIIKAVCLAEKELIASFNSLKRKQNLL DYSDMEQLAYQILTSDTTAGHLARQFYQNKFTEILVDEYQDINKLQERIIQLMKCEHNNL FMVGDVKQSIYGFRQADPSLFLNKYRAFAKEEAAERIVLADNFRSTKPVTKLVNKLFNPL LTPDFGGIDYQSEGQLKFGASYYPDDLPTASELLFYDKSEGSEESNQIQLVINRIKQLID EGFEVFDVKTGLKRPIEFSDIAILTRSRSQNLDLLKQFAQNNIPLFVSDVANYFQTFELT IIMNYLKIVDNPDQDIPLAAVLRSPIFNFKETDLAKIRIKSPNTSFYSALINYVSENDEL SKRIKDFLNQLADLRDFALNHRISETIWSIYARTSLLEIVTSLPNGKQRRINLENLYERA NSYESAGFKGLYQFINFINRMRKNQKDLAQPLLSKEAENSVQLMTIHASKGLEFPIVFYL GLEHQFQKSDLSGNYIISGDSCGITVVRSDWRIDSLVKAMGNVTKQKQLLEEEARIMYVA VTRARQKLILVTNFKEFSKDTENMGASLANDGSLTLTSELAAQKPADLLLPQLALNRQFI NQVTDLRPEVESKQDFLVVTGDAEAVELVEKQDVNEEGKVSEFIVKNVKKLFEATYPFQD ATTTTAYQSVSELKKAFNDPIDDELANSRFIKSANRYLQDIDTRPGFLFEDGFTGAEIGT AMHLILQFFDYQGKTSVEAEIEKLVQSGKLNPKIVPHLPITEISWFVNSNFAKKFWNDPT KLKREVSFSSLLPAADVFKPFSDPNAKILVHGTIDGYYLDDDGIILFDYKTDYVNKNQLA QSIAKIKDKYTGQLRLYERALNQLGKEKVKSKYLILLDAQEIVEVD >gi|260196064|gb|ACQN01000003.1| GENE 5 8316 - 11771 3073 1151 aa, chain - ## HITS:1 COG:BS_addB KEGG:ns NR:ns ## COG: BS_addB COG3857 # Protein_GI_number: 16078126 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Bacillus subtilis # 36 1142 38 1158 1166 306 23.0 2e-82 MLKILTGRQSDPLHEKILAEAVNNYEQNPELETFIIVPNHIKFTTEIEAITKLAGLRRKS EASVKNLHILSFSRLAWFFLQDRPEVLKPVIDEAASSMLLEKIVTEKKNELVLFNQFSQN SGLIKQIYQSINEVSSSDFDLLDAQSHVTDEETKNKLHDLAIIKTAFDEAIVDRFITKQD FLTEMNIFLAGSNRLKDCSFYFVDFSQFNGTEQVAIELFAQKAKQVVLAFATEDGTIKAS PEAGDYDYVVQKTIKKLQRRLSFTYEQYASPVKDLTAKQRLDHYWTGDLDYDEQNKPNVQ LIKADSRYDEAYFVARTIYQQVSLNKFRYQDFLVLAPNLHEYETYLTPILRQNGIPFFND LQKEMKYHPLVIFIESLQTFLETGFESASLFSLLKTRLFIPSFYQDEAAFLRDVDELENF ALAHGINYYLWNRPLTSFVKIKRPIIALDKRNNEVERLEKLRQVVFKELNNFIEQFKKAE EVKAGVKFFFDFLVKIGLTKRLESWRKQAVDKNDLQASQEPKQIWDLLLNLLNDFLLINK PEDQFSASDFLRILISGFKEANFAQIPASLDAVSLSEMGMVQAKNYKNVFIIGASSNNLP QISNTPGFLTSENLAQISSADGDNALEDRQELANLDQDYQFGACLTLASNWVYISYPFLN TANESIEPSTYYTKLQKLGARELEQADLPKEDASDILSFTTNASASLGYLTSLLPSYQNT LLDLAKNYAPQKYTQLIQGRNFNNQPVNLGQKLAKELYGLKLTSSVSQLETYYQNSLEYF FNYGLRLKPRAENELDVIQAGNYFHQTFDYLVKYAQAHQYDLAALSDEQVLAALTEVRNQ IHQEGSYEQLLSDPFNQYLFTSLDKTVNTVAFNWKKRMAQTPFRPAYSELAFGSGNKLAG LKFKLDQTREIDLRGKIDRVDLAPYKNELLGQVIDYKSSSKNFDLALFASGISLQMVSYL DVLAKNASFFGNDSLDLLGAFYQTITKQVERLNKPDQLDANLLPKKALAQAKQRLVYSGL LVNNEDYILTADPELKEPKVSSKLYKSVRSKARGGLTLPRDRHFTEDELKLVLRYNEYLI KKAGKAILTGDLALNPYQYGQENGLKYSNYQDIFFFDAKLAENNYRKISSLDKASFMQYI KEILEKEEDNG >gi|260196064|gb|ACQN01000003.1| GENE 6 11828 - 12742 792 304 aa, chain + ## HITS:1 COG:L7866 KEGG:ns NR:ns ## COG: L7866 COG1577 # Protein_GI_number: 15672386 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Lactococcus lactis # 6 301 10 307 310 171 34.0 1e-42 MQTSYLAHGKVILIGEHSVVYGYNALSMPIQSLNIKTTVSENNDNYHYMDTDRYHGDFFK APAEYAGLKYILQYFLNLKPSSPYLKISYRGLIPIERGLGSSATVSLGTTKALNEFFKLK LSDKEIMAITNHAETINHGKASGLDSATVNSDYLVFFNKKTGVQILKQKLNATLLIMDTG DLGNTKEAVELVKNEVTSSKKQANNLENLGNLTDQVKQAWISQDAKQVGQAFTKAQKYLA ELKVSTPKIDHLCQLAIDTGAYGAKLSGGGLGGIVIALCPNQELAQTIANKCHKLISNYW IEEI >gi|260196064|gb|ACQN01000003.1| GENE 7 12742 - 13704 953 320 aa, chain + ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 5 310 7 316 327 227 44.0 3e-59 MKNTARAHTNIALIKYWGKKDADLRLPLMSSISMTLDAFYTDTSLLIDTEDKKFILNGQE VTGPAANRVFDYVERLQKLFNVAGNFHVISDNHVPTAAGLASSSSAFAALAASFVKAYNL SISPKGLSILARLGSGSATRSIYGGFVKWNKGTNSANSFAEVIDEKPQMDLKLLAVEISE AEKKLSSTKGMKLAQTSPFFKPWIARNDEEIAQMEAAIKSNDFTKLGQLAELSASEMHAI NLAAQPGFTYFANETLEIIKLIQELRNKGLECYYTIDAGPNVKILCQKNSCSNIKKYVKN ILPNVKIVEAGFGPGITYLD >gi|260196064|gb|ACQN01000003.1| GENE 8 13743 - 14831 979 362 aa, chain + ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 354 1 355 358 273 41.0 4e-73 MITEKAPGKLYIAGEYAVLEQNCPAIIVALNQFVRVSISAAVGNTGIIHSKQYSQDSIHW RRQGNKMVIDNRDNPFEYILAAIRFTEQYLLENGISLKVYDLHVNSDLDSKDGRKYGLGS SAAVTVATVKAILAFYGIERKHDLVYKLAAISHYSVQGNGSAGDIAASVYGGWLAYQTFD KKWLKRGLTTKKLSEVLSEAWPGLQVQLLTPPAGMELVIGWSQKPASTSRLVDETNAQKE NFQREYEAFLANSRQCVLKMIAGFKEQNINLIQEQIRVNRKLLAHFAKLNHIAIEIPRLT ELIEIAEKLGFAAKTSGAGNGDCGIVITNHSGKISDLKAAWRKVGILPLDFRVHVLKQTK EK >gi|260196064|gb|ACQN01000003.1| GENE 9 14831 - 15853 1099 340 aa, chain + ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 6 317 8 323 349 218 38.0 1e-56 MSNHSKRKEEHLALAKKYFTIKDNDFDRIELVRPALPESRVSSAAIACEILGKKVKAPFY INAMTGGSEKSKEINRAIGKASRIGQIPFATGSSSILAKEKDQLASFYVAREENPDGLFF ANVNPNTPANTAKNIVQELQADALQIHINTVQELAMPEGDRDFVWIDKLKAIRDVVDVPV IIKEVGFGFDKASIELLQKNNFNLIDLGGAGGTNFAQIENARSSHPLPYLDELGLSTVKS ALIAEECGIDFFASGGIRNALDILKCLVLGAKSVGIANLFLQAYENSGEDGLVETVLRFE DELAGLFALFGINNVNEAKKIKYALTKGLWKELIQIIVDD >gi|260196064|gb|ACQN01000003.1| GENE 10 15889 - 15984 60 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MITLYFMSVDLLEDNSTEWVYKITTDYQEGH >gi|260196064|gb|ACQN01000003.1| GENE 11 16322 - 18667 2040 781 aa, chain - ## HITS:1 COG:SPy1246_1 KEGG:ns NR:ns ## COG: SPy1246_1 COG0144 # Protein_GI_number: 15675206 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pyogenes M1 GAS # 324 613 2 281 297 258 47.0 2e-68 MKIKKIFLGIFLFACFLVAGVLVSNIQSISADQVLTASGLSSYSRNLKTNSKVEIRTLLK YLTKKYPNEKITLELNNKYDQDQVLIWSNYQNELLPVAKGRYFNPEEFEGVVSFGIVSPT SNIQLLNTQDNKYIVLNNRYISVVGTLKEVSDNIQTKYYLTTGINQGNSKARLNNFDIII DTPSNRVVQGVSKYLNGQVTFSELVSTHRRTHFIRAMAFSILLGIIVLFAGLVAGACAII NHIHSQMDKIERPLKKYFIASKLGRFVFINILMGLAAYFFLTWRLYFTSLSYLIILFVLM MTLNVVIYMLVVFFLNRKEKLDKLVLPKEFKDKYQKLLAKKADSFFTALEAEPKKAFRLN PLKADYQEVSYDLSKPVDGVADAYYGEISGRDIEWVSGYVYSQDPSAMYPAEALGVKPGQ KVLDLCAAPGGKSTALLSALKNKGLLVANEISTSRAKNLRENIERWGADNCLVTNEDTSH LAQKFPRFFDAILVDAPCSGEGMFRKNHDAVTYWSQEYVLECSNRQKEILNEAVKMLKPG GSLLYSTCTYAPEEDEEICAYLVNELGFKLVETKVSVASQGVPAWGENLDGIEYARRFWP EDEIGEGQFLAKFILPEINNEEAVTNSKQKSKKRGKKANKRLEVFTKAEKELVQELLADF NLPNNFDFSKAVKSKDHVYIPAVEDVSQIKVLNNGLELGVLKKGRFEPSQQLAQYLGQVR QEKVVELQNQAEFEKYLHGETVRTEAKLKGFVLISYQDKIFSFGKVTGQVVKNFYPKGLR I >gi|260196064|gb|ACQN01000003.1| GENE 12 18657 - 19379 479 240 aa, chain - ## HITS:1 COG:no KEGG:lhv_1281 NR:ns ## KEGG: lhv_1281 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 240 1 249 250 219 45.0 6e-56 MTDFLTKLIKIDNELNIPRLHQEVCEVKRVCSVLDKKEVPNCQIMNLGPITAQKSAAKKI QVANNLLNSFRQYLSLHYGLWSLPNVQTARIIKEKYNITSAVEVMAGNAAWSKALSMAGV KVYASDNLVWSKTSKTGGDLFYPVENLDASSAIIKYQNCDLIICSWAPNFGHADIDLIKV WKKLEHRPKLLFVGEEFGVTNSEEFWQTVSFIKKPELASVNASFSSFDFIEERFFEIDED >gi|260196064|gb|ACQN01000003.1| GENE 13 19466 - 20044 650 192 aa, chain + ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 30 180 26 180 188 137 46.0 9e-33 MGKNISNKAAENESLGKWLLQVFVMAAILLGIYYLIFSFVLSNETVSGPSMQPTFENGDR IIALRHTSLKRGDIVILNAPDEPGALYIKRIVGMPGDSITYKNDQLYLNGKKYSEPYLTE GKKLYSGGQLYTENFSLKSKFGVNKVPSGEYFVMGDHRNVSKDSRYFGFVKRSAIVGKVI FRYWPLTKWSTF >gi|260196064|gb|ACQN01000003.1| GENE 14 20115 - 20300 225 61 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01185 NR:ns ## KEGG: LCRIS_01185 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 3 59 4 60 62 77 75.0 1e-13 MNQEELSDVIITYQVKHHVNDTELAFASHLSVEKIHAMKTGDGSFTGEEINQILEYIQSQ D >gi|260196064|gb|ACQN01000003.1| GENE 15 20350 - 21036 503 228 aa, chain - ## HITS:1 COG:SP0288 KEGG:ns NR:ns ## COG: SP0288 COG1266 # Protein_GI_number: 15900222 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pneumoniae TIGR4 # 13 219 11 212 230 62 29.0 8e-10 MKIISYLKKIGLFIVSFLLYELLMSSYVIPKSLNSNKEMIGKYHFVLYVATIALVMLVYH IYKKQLEQENEWHFNEKPHFKWSKLGYSGLAFVVMIAAQVLINMFLSSSSNSANQKAIDQ LAKGTDWHFIVFIIFLAPMFEEIILRGQFFNIAFTKENKLNYWLGIVINGLFFAWLHDPN FSIHIITYWVMGAILATTYLNTKDLRYSFVTHMLNNTIAALPLIFGMH >gi|260196064|gb|ACQN01000003.1| GENE 16 21097 - 21855 501 252 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851174|ref|ZP_05556563.1| ## NR: gi|256851174|ref|ZP_05556563.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 252 1 252 252 385 100.0 1e-105 MLALTDSLFQTKKNQAKITLLGYFLISLILAVFLITGRAWSFVDFSLVPEDKGLPLVMSF SSTLYKFDLLFFVWCIYYFAKDLRKQTWQLVPLSSTKIFTAQWLSTLLACAYLFIGQLLL TFISYVVSYLWASNQVLNGLRLLFDAKFEFLNDLVFLTFFCLAWLLFTALVEICKYGIIS LLPFSGNKIFENIIEIILVIIGLIIAINGFNFMFFNVGTTEEAGTIFMIITSVILWLIVQ PLFNRIGESKAE >gi|260196064|gb|ACQN01000003.1| GENE 17 21870 - 22667 657 265 aa, chain - ## HITS:1 COG:no KEGG:LBA1187 NR:ns ## KEGG: LBA1187 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 263 1 276 276 70 26.0 4e-11 MTSFSTVFKLLQAKKAKKILMIYLIQLAAIMAIGTYLYLVNAKEFQSIFVSYEVIALTTS FFALLISWCILFIDEIKMYESQTWQLLPISSKKFFLANILTTYVTLFYMALLDLGTCAIL ISVAFAASKPELKDISVGKTLGQLPIGEIALYGLGIALLIALGLISFSLMINFLSFSSKT IVNLLPGFKSKKLVGLLRFIFAIVLYAILTYFINTFSNVFEKGIIDRQVNLLVLWLSVAE TGIFVLIGSIVDTWIYQKFFEAKAV >gi|260196064|gb|ACQN01000003.1| GENE 18 22682 - 23494 617 270 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851176|ref|ZP_05556565.1| ## NR: gi|256851176|ref|ZP_05556565.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 270 1 270 270 380 100.0 1e-104 MTSFSKLFKVMQLPKLKIASWIYLVQLVGMIAIGLYFQFSNSVRLPYESAFLAEAITLVL AGLFLYFYLLNKEIKSYKSQTWQLMPVSSIKLYLTNQLTTYLAIALFLVFQVINFGLILG AFAVSYPINFSEISKALNNPTSTSVLGQMAVYMISLGCLFVLSAISFMVIIIFLVMVSQV IVNLLPGFKSKNLVNLVRIIIGIIGYLIIGNVSSFAFESLLKIKDNPLAALSSSGLSALW TSNGISLLFILVITAVNLYLLKRFFEAKAN >gi|260196064|gb|ACQN01000003.1| GENE 19 23495 - 24196 190 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 210 1 219 305 77 26 4e-13 MNKALEIQNLTYKKNQKVILDNINLDLAQGKIVALLGENGAGKTTLMRCIAGVAKNWSGS IKVAGKSGEAEKKAKLAFTDKLTGFSDSTKIKHVIKFYETIYSDFDLEEFTKLREFMKLS PDMRLGQLSRGMREKLVIALTFARKADLYLLDEPFSGIDPMARKKIINSIILWKDDNATI LISDHFVNEIATLLDEVIILKDNRILTHQSADQIRSENTSIESFYQAFYEGEE >gi|260196064|gb|ACQN01000003.1| GENE 20 24196 - 24564 450 122 aa, chain - ## HITS:1 COG:SPy1285 KEGG:ns NR:ns ## COG: SPy1285 COG1725 # Protein_GI_number: 15675238 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 2 117 4 119 123 92 36.0 2e-19 MEFKDNVPIYIQIEQYLYRLIVQGELPAGQRIPSVRQLAVDLTVNVNTVQRALQEMNNQG ILFTKRGEGNFVTEDTALLEKTKKELLTRELDDFVENMHRLGIKNDELVPTLSEYLESLG EK >gi|260196064|gb|ACQN01000003.1| GENE 21 24858 - 26096 1707 412 aa, chain - ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 1 412 1 413 413 441 53.0 1e-123 MEYPNLLPRFLKYVKINSRSDEHADRFPSTQREVDFQMVIKKDLEELGLSDIHYNEKAGV LIAEIPSNVDYDMPVMGFLAHCDTADFNSENIKPQITENYDGESKIQLGDSEFYLDPAVF PNMKKYKGQTIISASGDTLLGGDDKCGVSELVTFAEYLLAHPEIKHGRIRLGFTPDEEIG TGAGHFDVEDFGADFAYTVDGEAPGKLDWGTFSAAQFGLDIQGVNVHPAVAKGQMINAIQ VGINFQNSLPQNEVPEQTEGREGFYHLMNFQGTVDNAHLDYIIRDFERDGLEARKNLVKS IVKKMNDEFGEERLKLKMWDQYYNMADELKKHMEVVDLARDAYKAEGLTINEDPVRGGTD GSQLTYMGLPCPNLFAGEENMHGRFEYTVLESMWKAVDVMVKMAELHAERSK >gi|260196064|gb|ACQN01000003.1| GENE 22 26113 - 26910 960 265 aa, chain - ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 16 264 15 265 265 196 40.0 5e-50 MTKVKDIIAKLNERFPENIASSGDPVGLQIGSVDAEVTKIMTTLDVRPNVVDEAIKKGVD LIISHHPVMFRPARNLDFSDPQNAMYGKIIAHGITVYSIHTNSDKAENGSSDWQAEELGL TNIEPFAIDDDGIAVGRKGKLPKPMKAIDFAYYTKKQMNVDFVRLITANNDKIISTVGFV CGDGGKFWRDALKDNLDAYITGDVYYHVGHDMISSGLTVVDPGHYTESLFKTKCAEVLDD FKASENWPVEIVISQESTDPFQDLM >gi|260196064|gb|ACQN01000003.1| GENE 23 26903 - 27592 722 229 aa, chain - ## HITS:1 COG:BH1379 KEGG:ns NR:ns ## COG: BH1379 COG2384 # Protein_GI_number: 15613942 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Bacillus halodurans # 2 223 6 231 235 158 42.0 6e-39 MLETRLAHLAAMVDENTRLADIGTDHAYLPIDLVKSGKIDFAIASDVAEGPLDNAKTDIL AAGLSKNIETRLGSGLETLRPEDNIQTVVIAGMGGKLMSDLLETAKVNGNLYPTLILEPN IGEPRVRKWLMENNYQIIQEEIIDTAGHIYELIKATLTTSKHSLTDKELLFGPFLLKEKT AVFTKKWTNQLAYQKQLLLNLNKAKNKDMARISEVEQRIKFIEGELEND >gi|260196064|gb|ACQN01000003.1| GENE 24 27696 - 28790 1365 364 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 1 364 11 374 374 457 71.0 1e-128 MADMTLDKKVKELVKEVKKSKEITETDFTEKLIKPYKLEGKAVDQLVQEFEDNGISIVDA NGEPSNLALKKQKDVEKEELKDLSAPASVRMNDPVRMYLKEIGRVPLLNADEEIALAKRI QDGDEEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFNYKLGFKFS TYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMD MGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEEVL DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLK DFLD >gi|260196064|gb|ACQN01000003.1| GENE 25 28803 - 30590 1424 595 aa, chain - ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 3 595 2 621 626 379 35.0 1e-105 MAGRIPEDFINEVRNSINIVDVISQYVSLEKRGKDYVGLCPFHQEKTPSFTVSEDKQFFK CFGCGKGGNVFSFMQYKEGLSFPEAVAEVAKMANLAMPSGYQSEMKPLSPLKKVHQDACD FFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDDTVLAK SGLFSQNENGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPETEIFNKS KVLFHLKEAKKAARTEKHLVLYEGYMDVIAAYKAGIKTGIASMGTSLTDDQVYLLKRISR NIIINYDGDEPGQHAIERASHMFETVGGFQVGVVSLPEGLDPDEYVKKYGPERYQDEVKG AITPTDFFLKRLELKYNFSNDREKLAYLDEAVKLIAPLNNPVERDLYVTKLAKKVGVSED SLKVSLLREGRKLRVAERRKKQYDFEPEEQSKTQVATLHNANPALVRLFYLFVHSEKVRN YLLDLHFLFPDESYAKLAESWLDFEETHDNATINSFYDFIPDDLKGIIDNMEMMTMPEDF SKEEVDGLLASLKKLDTQRKISNLQMQLQDAQRRQDEDQVLKTLEMIINAKRNNN >gi|260196064|gb|ACQN01000003.1| GENE 26 30642 - 32708 2400 688 aa, chain - ## HITS:1 COG:SPy1688 KEGG:ns NR:ns ## COG: SPy1688 COG0751 # Protein_GI_number: 15675548 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 688 1 679 679 603 48.0 1e-172 MTKDYLFEIGTEEMPAHVVSRSVKQLADRTSKFLKDNGLEFKAIKTFSTPRRLTILVQDL AEKQADIDEIKKGPAKKIALDSEGNFTKAAQGFVRGQGMTTDDIYFEELKGTEYAYVHVQ KAGKLATDILLGMSDIIKAMTFPTKMRWGSNDFEFVRPIHWLVSLFGSEVVPVKILDITA GRKTMGHRFLGDSVILANSDDYEEALKGQFVIADAAERKTMIVNQIDQLVAENNWKVKLD ASLLEEVTNLVEYPTVFAGSFDESYLNIPDEVLITSMKDNQRYFEVYDQDGKLINHFISV RNGNKEFLENVISGNEKVLVARLDDAKFFYDEDKKYPLSHFVSRLDKVSFHDKIGSMAEK LVRVRIIGEYLAKKFGLSDGVIKNFDRASELYKFDLVTQMVGEFAELQGVMGMHYAELAG ENKDVALAIKEHYMPLTAEGELPTSEVGALLSVADKFDNIITFFAAGMIPTSSNDPYALR RYAYGIVRILLNQNWSLAIDKALPEMVELLDGKTKAKMPKTGQEDEEISLFIRDRIKQFL QTNNYKYDVIDAVLHSSQKDPSRILAAAKVLQAHHDSPEFKPVVESLIRIENILKKAKYK GDSVVKSDLFEDNSENELYLASQNLQAIDNFTELYEAFVSMQKVIDRYFEVNMIMAKDEA VKNNRLAQLSQINELATRLGALSKLVIK >gi|260196064|gb|ACQN01000003.1| GENE 27 32701 - 33618 1028 305 aa, chain - ## HITS:1 COG:BS_glyQ KEGG:ns NR:ns ## COG: BS_glyQ COG0752 # Protein_GI_number: 16079581 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Bacillus subtilis # 6 293 1 288 295 449 69.0 1e-126 MTNKKLNVQDMIFKLEQFWASKGCMIMPSYDVEKGAGTMSPYTFLRAVGPEPWAACYVEP SRRPADGRYGDNPNRLFQHHQFQAVIKPAPIDIQQYYLDSLRVLGIEPLEHDIRFVEDNW ENPSMGCAGVGWEVWLDGMEVSQFTYFQVVGELDVKPTMSEITYGVERLASYIQDVNSVF DLEWGNGILYRDIFKEPEYEHSKYAFEESNQEELLQFFDTYEATAKELLGKNLVHPAYDY ILKCSHTFNLLDARGAVSVTERAGYLARIRNMAHEVAQCFVEEREKRGFPLLKSAEVEKA ESEND >gi|260196064|gb|ACQN01000003.1| GENE 28 33862 - 34617 516 251 aa, chain - ## HITS:1 COG:lin1497 KEGG:ns NR:ns ## COG: lin1497 COG1381 # Protein_GI_number: 16800565 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Listeria innocua # 10 250 6 246 255 164 35.0 2e-40 MTREVVEVTGIVFKRQRYKEADVLAKIISKDMGIFTMLVRGALRPKSKLSASVLAFSYGN YQVLTSQKGLSPLKTYKDIKQFSNLYSDLTLNSYACYLCDLVDHAFVEYQSLGEFYNLIL VALTKLNAGQDPEIICQLVELQMLAAYGVRPQFKQCAICGEIHGPFDYSISAGGVICQKH FNEVARMHLDAKQVAMIRTLGLVNINRLGQINVKPDTKKAIRRAIDRIYFQTVDLNLKTK KFLDEMRRLEI >gi|260196064|gb|ACQN01000003.1| GENE 29 34617 - 35525 943 302 aa, chain - ## HITS:1 COG:BS_bex KEGG:ns NR:ns ## COG: BS_bex COG1159 # Protein_GI_number: 16079583 # Func_class: R General function prediction only # Function: GTPase # Organism: Bacillus subtilis # 7 296 6 296 301 338 56.0 1e-92 MVETSKFKSGFVALIGRPNVGKSTLMNHLIGQKVVITSNKSQTTRNKISGIFTTENLQAV FVDTPGIHKPQNKLDDYMDKASLSSLNDVDLVFFMVEPEKVGKGDEYIADLLSKVKVPIF LIINKIDQVHPDSLLPVIESYQKLGKFAEIVPISATNGNNMEDLVATLYKYLPEGPQFYG SDEVTDRPEYFVVAELIREQILRLTQQEIPHATAVVVERMNQRINGKLQVEATIYVERDG QKKIIIGKGGSMLKKIGIQSRKQVEALLGEKINLHLWVKVQKNWRTDPSFLKQIGYDSKD LF >gi|260196064|gb|ACQN01000003.1| GENE 30 35509 - 35931 522 140 aa, chain - ## HITS:1 COG:BH1366 KEGG:ns NR:ns ## COG: BH1366 COG0295 # Protein_GI_number: 15613929 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Bacillus halodurans # 4 136 2 132 132 123 45.0 9e-29 MNTEEKKLYELAVAHLNTAYAPYSKFHVSAALLTESGKITTGVNIENAAYGSTICAERVA LFNYVNQGLKDDPIKCLLITGNTSRPISPCGSCRQVMAEFMKADSKIILTNAQGDYKMTT LADILPYYFTDGDLADGRNK >gi|260196064|gb|ACQN01000003.1| GENE 31 35931 - 36455 565 174 aa, chain - ## HITS:1 COG:SA1399 KEGG:ns NR:ns ## COG: SA1399 COG0319 # Protein_GI_number: 15927150 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 6 161 4 152 155 121 44.0 8e-28 MDAIDITYNDETNFLADTSRDWRKWIMDLLLMAKKEISKDNNLEMSINFVDEDKSHQINR DYRGKDRPTDVISFAIEDGEEGVDLSSFIEDPDFTEDIGDLFMCISVIKRHAEEYGTGFD REFGYTLVHGFLHLNGYDHIEPAEAKEMFGIQGKVLEEYGLPLYPDQLDEGRGK >gi|260196064|gb|ACQN01000003.1| GENE 32 36455 - 37408 1069 317 aa, chain - ## HITS:1 COG:lin1504 KEGG:ns NR:ns ## COG: lin1504 COG1702 # Protein_GI_number: 16800572 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Listeria innocua # 13 313 16 315 319 359 61.0 3e-99 MPQFTFTPQNPANIMSLVGVNDSNLKLLADGYDLTVADTGDGILIDSPDEKKVKLVIKVL AALEKVVNSGVSIAAPDVVSAMKMAEKGTVEFFGDLYNKILIRDAKGRPIRPKNAGQQAY IAAIQKSDIVFGIGPAGTGKTFLAVVMAVSAFKNGEVSRIILTRPAVEAGESLGFLPGDL KEKVDPYLRPIYDSLYAVLGTETTNRLMERGVIEVAPLAYMRGRTLDEAYVILDEAQNTT DAQMKMFLTRLGFNSKMIVNGDVTQVDLPGKQHSGLLDAMHILKDVDQVKFVNFTFNDVV RHPVVAKIIRAYEEEGH >gi|260196064|gb|ACQN01000003.1| GENE 33 37429 - 37890 394 153 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 152 1 147 147 156 54 9e-37 MSLMDQLMADMKEAMKAKDKERLATIRMLKSALMYATIKDEGKLSDNELSREQELAVLGK EKKQREESIADFKKAGRDDLVAATEKELEIVESYMPKPFTEAELSQLVDETIAEVGASSK ADFGKVMKAIVPKITGRADGKEVSKLVGAALSK >gi|260196064|gb|ACQN01000003.1| GENE 34 37961 - 38137 292 58 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 [Lactobacillus acidophilus NCFM] # 1 58 1 58 58 117 100 6e-25 MAKTIVHENESIDDALRRFKRSVSRSGTLQEYRKREFYEKPSVRRKLKSEAARKRRHY >gi|260196064|gb|ACQN01000003.1| GENE 35 38100 - 38219 217 39 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239632784|ref|ZP_04675815.1| SSU ribosomal protein S21P [Lactobacillus jensenii 1153] # 1 39 1 39 39 88 97 3e-16 MTYKDLFGYNLTILLWQYCQEMEGGISHGQDYCSRKRVN >gi|260196064|gb|ACQN01000003.1| GENE 36 38283 - 39107 1082 274 aa, chain + ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 9 264 10 264 270 220 43.0 3e-57 MEKSKIVNIIIISDSVGDTAFNLMKAAAAQYPDAEVNYRRYPFITTMEKLEKVFDELDSC EHMLIGYTLVNSDLQLATIKFAREHGAKPVDIFSSVVDDIHAMTGLEPSGQIGASHQLTK NYFDRISAMEFAVMYDDGKDPKGFLEADVVLLGVSRTSKTPLSLFLANKNLKVANLPLVP QTHIPDEIYQIDPKKIIGLTNDPQVLNEIRVARLKSYGLDPETSYSNMDAINKELASAQA LFTKLGCYVVNVAHRSIEETAALILRHLGIEDEM >gi|260196064|gb|ACQN01000003.1| GENE 37 39158 - 40036 937 292 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 1 288 24 310 313 270 46.0 2e-72 MESLEGLSRRYNLLSKISAAFLYAIAVAVALNFFWQPGHMYSSGVTGFAQLINTLSERYL PFTLTTSTLYFALNVPLFILGWFKIGKKFTIFTIIAVFLASIMMHSLPAPEWKLDPLICA IFGGVINGVGTGLALKSGISTGGLDIVGIILRKKTGQSFGSINIAINLLIVIAAGFVFGW TRSLYTALNIFINGRVIDTVYTQHQKMQVMIVTEHPKKIIDGIQEKMHRGITIIHDVEGA YGHTEKTILFTIIDRYDMYDIHNIIVACDPYAFVSVSEVAKVYGRFKEQELV >gi|260196064|gb|ACQN01000003.1| GENE 38 40114 - 40644 661 176 aa, chain - ## HITS:1 COG:BH1448 KEGG:ns NR:ns ## COG: BH1448 COG0225 # Protein_GI_number: 15614011 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Bacillus halodurans # 2 175 4 178 179 205 56.0 4e-53 MTEYKKAIFAGGCFWCMVAPFDTLPGVKSVISGYTGGHKENPTYEEVCNHTTGHLEAVEI TYDPEKMSYEKLLSYYWQVVDPTDEMGQFQDRGETYRPVIYYSDEEEKSLAEKSKQELAD SGKFDKQIVVAIEPVQKFWPAEDYHQYFYQKNPLRYMMEEAGGRAAFIEKHWSKNN >gi|260196064|gb|ACQN01000003.1| GENE 39 40644 - 41084 515 146 aa, chain - ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 11 143 9 143 145 186 65.0 9e-48 MDLSEKQAALKKLSKEQYEVTQHAATEYPFSGKYDDFFEEGIYVDVVSGEPLFSSLDKYN SGCGWPAFTKPIEKVVYKRDSSHNMERTEVRSKDADSHLGHVFNDGPVDQGGMRYCINSA ALRFIPKADLEKEGYGKYLALFEGAK >gi|260196064|gb|ACQN01000003.1| GENE 40 41167 - 41379 165 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851196|ref|ZP_05556585.1| ## NR: gi|256851196|ref|ZP_05556585.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 70 1 70 70 116 100.0 5e-25 MCDYKKHIIGLGTIWNITMNIGPILVGSSVQESLIWFFWTEVVIVVGLQFLIILVYIIGF FRKKFYSKNE >gi|260196064|gb|ACQN01000003.1| GENE 41 41404 - 41742 257 112 aa, chain - ## HITS:1 COG:no KEGG:TherJR_0530 NR:ns ## KEGG: TherJR_0530 # Name: not_defined # Def: transcriptional modulator of MazE/toxin, MazF # Organism: Thermincola_JR # Pathway: not_defined # 5 104 6 102 110 82 40.0 6e-15 MVEYPQSGSIIYINFDPSIGAEIQKRRPAVVISNDILAKTSPFAWVVPISHDSFNGEDYP LHVQLDARTQVDGTIYVEQIKAFDFNHRQWQFVEMLPMDIFDEVRKKARLVI >gi|260196064|gb|ACQN01000003.1| GENE 42 41736 - 41984 260 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851198|ref|ZP_05556587.1| ## NR: gi|256851198|ref|ZP_05556587.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 82 1 82 82 155 100.0 8e-37 MDTVKARIQGNATVVTIPKSFNVKPGTEYRFTKGKGGVLTLTPAKRVPSSIEELFKDWHG EYQVPDDLKEWQNVKPEGEELW >gi|260196064|gb|ACQN01000003.1| GENE 43 42227 - 42412 142 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260664316|ref|ZP_05865169.1| ## NR: gi|260664316|ref|ZP_05865169.1| predicted protein [Lactobacillus jensenii SJ-7A-US] # 1 61 158 218 218 84 98.0 3e-15 MKKEIAQEKVYDKQLKLKTSAIQNLRESWQNASIRENMRKKFESKAKLRAKKLAMSRGFE R >gi|260196064|gb|ACQN01000003.1| GENE 44 42758 - 44344 1610 528 aa, chain - ## HITS:1 COG:SP0137 KEGG:ns NR:ns ## COG: SP0137 COG1132 # Protein_GI_number: 15900076 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 16 528 12 535 538 157 27.0 4e-38 MNTSLKYAPKWKLVLYSLLAIISSLGNVVIAYVTKIMLNSAQNHQGSVQLIVVTATIGSL TLIAIMFINFGFRYLRNDIVQDINLSLKKRIVTYLIYNQKDSQKDGMSLLTNDMKQVETA KIQNELLVIYQGITFVIAVSVGLINSWLLTLIFMVTTLIPGFIQKFFTKNIQEKSKIWED NNAIYTQKVNDGLNGAKTVALYDVQPVLIKKIINSATNMEVALKKFNYTQGAVGELILAI ANVFSFIIPFLIGAILMFNNQIGAGTLVMIIQLSNDFINPVVDIFQRYNAIKSTDSIWGK VSDALNFKIDDSVNEVISDFNSLKVSNLSYEVPNKQLFDNVNFDVKPKDKVLLMAPSGWG KTTLLGILLGRIAPSSGKVEINQVDETGNWKKLHSYFSYINQKPFIFDDSLEYNVTLGRK VSSEKLNYAINQAGLKDLVEEKGLNYQVGEKGNKLSGGQIQRIEIARDLLAERPIILADE ATSSLDPKLSLAIHKTILEQNQAAVIEVAHKVTDEERAMFTKIVKFSK >gi|260196064|gb|ACQN01000003.1| GENE 45 44494 - 44826 208 110 aa, chain - ## HITS:1 COG:no KEGG:MGAS10270_Spy1407 NR:ns ## KEGG: MGAS10270_Spy1407 # Name: not_defined # Def: putative cytoplasmic protein # Organism: S.pyogenes_MGAS10270 # Pathway: not_defined # 1 109 4 111 112 64 31.0 1e-09 MEPMDIYIANVPFDENNRSKVRPALVIEISQDSVMVFKITSQFKNKSIQIKNLYYPIEEW NQAGLKKQSYVDIHKLYKLPQKWIFRQQPIGKLTDNDKLGLFNFIKRKQK >gi|260196064|gb|ACQN01000003.1| GENE 46 44826 - 45092 402 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851202|ref|ZP_05556591.1| ## NR: gi|256851202|ref|ZP_05556591.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 88 1 88 88 171 100.0 1e-41 MDNVMTGRMSQKGQIVIPASIRKALGLTKGTELSFKVEGDEITIKKLPTALDWANLVKQI PVENVEIDKEGHYNPKKSPEFHDWMVNG >gi|260196064|gb|ACQN01000003.1| GENE 47 45277 - 47109 2237 610 aa, chain - ## HITS:1 COG:SP2114 KEGG:ns NR:ns ## COG: SP2114 COG0173 # Protein_GI_number: 15901929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 3 583 2 578 587 657 56.0 0 MDKRTDYCGNITSQYLDQEVTLYGWVQRVRNLGNLIFIDLRDREGIVQVVVNHDSGKDLM DKADSLGNEYVIEVKGKVVKRSSVNPEMKTGEVEVDATTITILNEAKNPPFEIKDDLSAN EQTKLKCRYLDLRRSTLQRALITRSKITTAVHEFFDSEGFIDIETPDLGKSTPEGARDYL VPSRVYPGSFYALPQSPQLFKQLLMGAGFDKYYQIARCFRDEDLRGDRQPEFTQIDMETS FLDEKGVQDITERLLQKVMHDVKGVDIKLPLPRITWNDAMNYYGSDKPDMRFDMKIQDLN EVFKDSDFKVFSGAIADGGFVKAIAVEGGAKAYSRKKIEEKQEYIKRFHAKGLAWAKFED GEFSGPVSRFITDNEAEQLKKIYNLKGGELLLFVADKWKVCCDALGYLRRSIAIELNMVS KDDYHFEWVVDWPLFEYDEGDDQWIAAHHPFTMPDDEGIKLLETEPHKAHARSYDIILNG YELGGGSIRIHKKDIQLKMLKALGFTKEKAYEQFGFLLDALDMGFPPHAGLAIGLDRFAM LLTGKDNIRDVIAFPKTASASEPMMKAPSPVSDEQMAELGIEVTASARSVRDDNQKELEK EAEADIKDHE >gi|260196064|gb|ACQN01000003.1| GENE 48 47127 - 48407 1558 426 aa, chain - ## HITS:1 COG:SPy2157 KEGG:ns NR:ns ## COG: SPy2157 COG0124 # Protein_GI_number: 15675899 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 424 426 464 54.0 1e-130 MKVQKPKGTVDILPEVSGNWEKVEQIARDFFKQANYREIRTPSFESYEVFSRSSGETSDV VEKEMYDFNDKGGRHIALRPEGTAGVVRSFVENKMYGPDVVKPFNVYYIESMFRYERPQA GRQREFHQIGCESFGSNNPLADIETIMMGNDLLNKLGVKNFELHINSLGNEDVRQKYHDA LVDYFTPVKDQLSEDSQRRLGKNPLRILDSKEEQDKQFLPNAPRIVDYLDDESKANFKYI TDALDKLGIKYVLDDDLVRGLDYYTGVIFEFMVADTDLWASPTTVLGGGRYNHLVEEFGG PETPAVGFGIGEERLMLVLEKQNPELFADTGIDFFIANIGEGTAMKSVELARTLRKQGKK VQYDVDQKKLKNQFKKADRVHAEFVITLGEKELAEGNVSIKRLADGKQIKFSWDEMNNIS EAMKNF >gi|260196064|gb|ACQN01000003.1| GENE 49 48674 - 49114 561 146 aa, chain - ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 144 1 143 147 155 55.0 2e-38 MRVVIQRVNHAQVKIDDEVVGKIKRGFLLLVGIGQDDNEKVIAKAAQKIAKMRIFEDEEG KTNLSLADVKGQILSVSQFTLLADTKRGNRPSFVNAMRPPKADELWQDFNQELKQLGFHV ETGHFGADMKVELENDGPFTIVLDLD >gi|260196064|gb|ACQN01000003.1| GENE 50 49114 - 51348 2698 744 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 744 1 738 738 830 55.0 0 MSKYIEMTHEEVISACKKYMNKEQLAFVERAYEYADKAHSGQKRASGQPYIIHPTQVAGT LANLGLDPDTVAAGFLHDTVEDTSVTNDDIKREFGEDVAFIVDGVTKLNKYEYKSHEEFL AENHRKMLIAMAKDLRVIMVKLADRLHNMHTLDHLRPDKQRRIASETLDIYAPLADRLGI GTIKWELEDMSLHYLNPEAYYNIVNQMNSKRSEREGYIETAIAYLKDTLDSLHIKYDIYG RPKHIYSIYKKMVNKHKDFSEIFDLLAVRVIVQNVRDCYAVLGAVHTKWKPMPGRFKDYI AVPKANGYQSLHTTIIGPGGKTLEIQIRTQQMHEVAEYGVAAHWAYKKGDTQAVEATSAG RKLDMFREILELKDETSNADEFMKSVKSDIFSDSVYVFTPKGDVYELAKGSVPLDFAYAI HTQVGSHAVGAKVNDKLVPLDYRLKNGDVVSILTQSNAEPSPDWMNMVKTSRARNKIRRF LKEQRKDENIEKGRSDVANLLRERGLNAKEYLDKEHIQKLLDQLNYHSEDEMFSQVGYGE VSAIGIVNRLTEDLRKEENKKQKELEEKILNAGQTATEETKNITPNRAVMHVKHNNGVVI QGVSDLMLHLAKCCNPVPGDEIIGYVTKGRGVTIHRTDCRNVTDEAAKEGRLIDVDWENV GERSETFNANIEIFGYNRSSLLSDVINKLNSLTKNIKNISGKVNEENIAHIYVTITVKDS QQLNEALSRLRDIPDVYSTKRSDN >gi|260196064|gb|ACQN01000003.1| GENE 51 51370 - 51744 393 124 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0856 NR:ns ## KEGG: LGAS_0856 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 123 1 123 126 83 40.0 2e-15 MAKLQLAKKKILEASWIKKLNSYSFMPVIWWTLLLVLLAYGSSLLQIKLTWRVGFIFIIL NSLISYQVGKVINDRNLKKYWLLFLPIVFLLVVLSRYAKYNLVLIIIYLIMEFFGSLKGN IYKN >gi|260196064|gb|ACQN01000003.1| GENE 52 51789 - 52733 1515 314 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238854674|ref|ZP_04645004.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii 269-3] # 1 314 1 314 314 588 92 1e-167 MKLLLIKLQTSHEIEDALTYFSQEQVKALGVEARKRSDFEQAGWANDSTVVDFDDIENLP DDMEFIAYFDQERDPQELIEQYKDKLTELESYGLDTGKKEISYDYVQDKDWNKVWQKYYH VLNFSRHLAIVPEWEDYQPEFPDQKVITLDPGLAFGTGGHTTTQLVMMALERSMTKPAKV LDVGTGSGILAIAASKLGAESVLATDISDEAVTAANENIALNKLNNIKVIKANLLKNING KFDLILANILAEILFDLIPELNDHLAPNGKIIFSGIDYLQAEKVKQSLAENGFSVKTTMQ EGRWVCLLIERKPE >gi|260196064|gb|ACQN01000003.1| GENE 53 52799 - 53305 520 168 aa, chain + ## HITS:1 COG:SP0985 KEGG:ns NR:ns ## COG: SP0985 COG2606 # Protein_GI_number: 15900860 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 6 167 3 157 160 137 48.0 7e-33 MSKKRKKDKLEKTLVEKILDREKIPYEQKEFETHEEHGVFQMDTSILEQDQRLVYKTLAC EGNKTGPLVAVLPITEHLDLKKLAKVSGNKKCEMLPLKKLEKTTGYVHGANTPIGIHFND HYPIYLDNSMKNEEKIIVSSGKVGRSVQLAPLDLQKVVEGTFGDLLEK >gi|260196064|gb|ACQN01000003.1| GENE 54 53381 - 54739 1542 452 aa, chain - ## HITS:1 COG:yjjP KEGG:ns NR:ns ## COG: yjjP COG2966 # Protein_GI_number: 16132185 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 50 293 36 270 277 69 28.0 1e-11 MVKEIDKIDMGHHLSNSHHMKIQWEEFFKSKDETPAKKATLVEKASIVGRVGLMILSCGT GSWRVRDSMNTIARALDITCSADIGLLTIDCTCFDVNNQSYSQTLTLPSTGINMTKLNEL ERFVRQFEAGDGNWNIGQIHRRLGEIEHLKSRYTPVIAGLAAAIACAGFIFLLGGGIPEI VCAFFGAGCGNYTRMKMGQRHITMVAKVATAVFVACVTYFLAFQLLHFIFNIRSSHIFGY IGSMLFVIPGFPFITAGLDLSKLDMRSGLERMAYALLIIIVATTVGWATALLIGIHPGDM TKLGLNPVNLTIFRLIASFCGVFGFSLMFNSKVNYAALTAVIGAISNTLRLSLVDYGHMP PALAAFIGVLLSGLLASFIREKVGYPRIAITVPSVVIMVPGLYMYRAVFNLGLTRISLGA YWATEAIMIVIALPLGLIAARILTDSKWRHAS >gi|260196064|gb|ACQN01000003.1| GENE 55 54739 - 55557 590 272 aa, chain - ## HITS:1 COG:FN1377 KEGG:ns NR:ns ## COG: FN1377 COG1767 # Protein_GI_number: 19704712 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Fusobacterium nucleatum # 6 265 9 275 279 151 38.0 1e-36 MKYLHADLAIKALLYEVVTLPKPGLVDPATHGSHPDMDIYTFIDSTLSLRTYFEKAEELG RNYDGKLSDMFEKLRKHGIKAEQRMFASTKGINTHKGAIFSLGIFVCACSYAKSNNCDVF KIVQSMTQGLVERDLANIKNPKTAGEIEYQKYGKAGIRGQAEVGYPIVNQISLPFLRQAT GTLNEKLLDTLMKIASVTEDSNFIKRAGSIEKLDELKKWSKHFLDLGGAKEAEALAYLSR LDNLFSEKNYSLGGCADLLIITIFLALEEGTI >gi|260196064|gb|ACQN01000003.1| GENE 56 55731 - 57287 1925 518 aa, chain - ## HITS:1 COG:L0041 KEGG:ns NR:ns ## COG: L0041 COG3051 # Protein_GI_number: 15673173 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Lactococcus lactis # 7 518 1 512 512 715 70.0 0 MRRATTLENSINREMPADVLEKLNLKPFESVEIGHPDIQRVAPKVHVTAGENKVVDSIED VVKETLKDGMTISFHHHFRNGDYAFNKVMDVIIKLGYKDLTLAPSSLTGVMNDKVIEAIK KGVITNITSSGMRGSLGDFVSHGGLKNPVIFRSHGNRARSIEDGEIKIDVAFLGVPVSDP AGNANGQDGKAVFGSLGYALMDAQYADKVVLLTDNVVPYPNTPASIKQTQVDYVVKVDEI GDPNKIGSGATRFTKDPKELMIAQMVNDVIVNSPYFKEGFSFQTGSGGAALAVTRYLRQS MLDKGITASFALGGITKPTCDLLEEGLVKKVMDVQDFDKGAAASMAKNRNQQEIDASWYA DPHNKGAVVNNLDVAILSALQIDTNFHVNVMTGSDGVIRGAIGGHQDAANAKMTIITAPL VRGRNATVVKNVETVVTPGDSIDVVVTERGVAVNPKRQDLIDCFKKVPSIHLVTMDELQK LAEKQVGVPNKLKYTDRTVAVIEYRDGTVIDTIKEVRD >gi|260196064|gb|ACQN01000003.1| GENE 57 57259 - 58173 1316 304 aa, chain - ## HITS:1 COG:L0040 KEGG:ns NR:ns ## COG: L0040 COG2301 # Protein_GI_number: 15673172 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Lactococcus lactis # 4 302 3 302 304 365 65.0 1e-101 MTYIKNRLRRTMMFVPGNNPAMIKDAGIYGADSIMLDLEDSVSLTEKDAARLLVYEAIKT VDFGGSEVVVRINGQDTPFYEEDVKAMVKAGVDVIRLPKTESADMIKKLIADMEKAEEEY GIEKGSIGVMAAIESAQGVLNAPSIATSTDLMMGMALSGEDYTSDMHTHRYPDGREMEFA RNMVLHSCRAAGIYAFDSVFSNMKDTEGFYRETNYIHQLGFDGKSLVNPRQIQMVNKVFN PSKEEIENAKNVQNAIREARAKGSGVISMNGKMVDKPIVDKANRVLETAKASNLIDEEGN YIGE >gi|260196064|gb|ACQN01000003.1| GENE 58 58174 - 58467 512 97 aa, chain - ## HITS:1 COG:L0039 KEGG:ns NR:ns ## COG: L0039 COG3052 # Protein_GI_number: 15673171 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Lactococcus lactis # 1 90 1 90 96 85 54.0 2e-17 MEIKTTAVAGTLESSDIQIMIMNGNNGIEITLESDVAKAYGDQIKSVITDTLKSFGLTNA KVKAVDKGALDCVIKARTLAAAQRATQTTDKPALEVL >gi|260196064|gb|ACQN01000003.1| GENE 59 58457 - 59512 1197 351 aa, chain - ## HITS:1 COG:L0038 KEGG:ns NR:ns ## COG: L0038 COG3053 # Protein_GI_number: 15673170 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Lactococcus lactis # 15 351 5 346 346 315 49.0 1e-85 MDKVVDLYLNDPTTKKRWMSFLEKLDLHNFSEREVAVIDHTLGLVDEEGKLVGTGSVAGN VLKYIAVCNKDSEPGQRFNKIVTALSQYLFTQQIFHMFVFTKVKYADSFKHLGFSELART DEAAFLENGSPDVNDYLSSLPRIDGQIDKKVAGIVMNANPFTLGHRYLVEKASQENDLVY VFVVATDLSLFNSQERFELVRKGCSEFKNVVVVSGDSYMVSAATFPAYFLKSADSLIENQ TTIDARVFKNVIAPALSIKRRYVGTEPFSHATSIYNDSLQRELEPDIEVHLIPRLEKGKT TVTATKVRQLIKADDLAAIEDLVPASTAEFIKANKKELQRRIREGMKIDGN >gi|260196064|gb|ACQN01000003.1| GENE 60 59706 - 60659 785 317 aa, chain + ## HITS:1 COG:L0037 KEGG:ns NR:ns ## COG: L0037 COG2390 # Protein_GI_number: 15673169 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Lactococcus lactis # 10 313 7 309 309 209 35.0 8e-54 MVESYDNSQLAEIARDYYLSKLPITQISKKYNLSRYLIAKAFEEAEASGVVHISIKSNVK RNNSLETKLRNLFGLKEAFVLKDQDTTSHDNEQIVDFAAHQIQNYSKAAKEIGLTWGTTV LDTIVHFDEIKRPDLSFVQIAGMSLRTDTPHANYSLIQRAAEKFDAKSYILPAPLYILNQ TAHDLMEQEPAIAEVQKKYQHLDLIFTGVGTLASMESNRVWGKLQDQIFDGIDQNKVAGM IFGRAYDINGKIFESVENKFTGIQREDIMKTPIRFAIVKNKFKTHSLLGGLRTHLITHLV VNEAIANKLLQEVEKYH >gi|260196064|gb|ACQN01000003.1| GENE 61 60660 - 61451 735 263 aa, chain - ## HITS:1 COG:L34494 KEGG:ns NR:ns ## COG: L34494 COG0596 # Protein_GI_number: 15672802 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Lactococcus lactis # 3 260 4 263 267 112 32.0 5e-25 MEFKTSDHVLLHYTDTQTDLPAIICLPGIGASGKLFNKMVDLLKDKYRVLVLDPRNQGLS QRTYKGQRMSRHALDLEEFLAELKLTNVIVIGNSMGASTLFAYASLFGKGRFAAMIDLDQ PPKMINDDSWNFGYKDLTWDNFPISLKYHDTVHANYVRVDPEIAVPVKLERQEHPYDESS NYNFLCDHAFQDWRDVVMDLPVPLLVLAGEKSPYFNCEFAQAMQYINEKIESQVLAECGH ILQAERPEETTKAILSFLERHGL >gi|260196064|gb|ACQN01000003.1| GENE 62 61498 - 62421 1312 307 aa, chain - ## HITS:1 COG:lin0242 KEGG:ns NR:ns ## COG: lin0242 COG0039 # Protein_GI_number: 16799319 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 3 302 6 305 313 286 49.0 3e-77 MSKVLLVGDGAVGSTFANDLLQNTKLDELVICDVVKERPLGDSMDLEDITPFTGSTNVHA GEYSDAKDADVVVITAGIPRKPGETRLDLVNKNVKILKSIVKPVVDSGFNGIFVVSANPV DILTTLTQKLSGFPKNKVIGTGTSLDSARLRVELAKKLNVKVEDVNAYVLGEHGDTSFEN FDEATVAGKTLTSYSAMSADVLTAIESDVRKKGGEIIAKKGATFYGVAMMLAQIVKAVLE NKEICLPLSAPITGQYGIKHDLYLGTPAVINANGISHVIEAELSSKELAKMQNSADKMQE VLAGVEE >gi|260196064|gb|ACQN01000003.1| GENE 63 62450 - 63586 1404 378 aa, chain - ## HITS:1 COG:CAC0566 KEGG:ns NR:ns ## COG: CAC0566 COG2055 # Protein_GI_number: 15893856 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Clostridium acetobutylicum # 8 365 12 369 369 350 47.0 2e-96 MAEGKKVKFSYDKLNMLCMDAFQKFGFSEEKARIITDVLLTADLYGIQSHGMQRMVRYYK GIQKGTMKVNAEPEVVFETPISAVIDGHSGMGQLNGHFAMELAIKKAKEVGVGIVSVRNS NHYGIAGYYAKMAAKENMLGFSCTNSEAIMVPTYASKAMIGSNPQAWCVPANPYDFLFDA STTVVTRGKLEMYNKLGKKLPDGWALDKNGQPTNNAGEVLSNIVGHVGGGIMPLGGNTEE LGSHKGYGNGMVAEIFSSILSQGLTSDLVMKDGKAGTCHGFMAINLSSFGNPEAIKQHFS DYLQALRDAPKAVGQERIYTHGEKEMAAIKDREANGIPVIDKTMTEVYDLCQYLDLDFSK YFGDYVPPKADGMFTGNY >gi|260196064|gb|ACQN01000003.1| GENE 64 63684 - 64223 315 179 aa, chain - ## HITS:1 COG:SPy1190 KEGG:ns NR:ns ## COG: SPy1190 COG3697 # Protein_GI_number: 15675159 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Streptococcus pyogenes M1 GAS # 7 174 9 176 192 81 32.0 8e-16 MNIFKIGEPVTILDVLIDKDRRVELQNRLVLENKTWTIIGAKLNIPGPIKNNLVIEKFFK RELINFEKNAPFLLTLKEDWLEKKTGPEYFYLAMDKPINVKKYCIKFEQTNQATRLFDLD VHYFEKGQVKDLSRNQLGISGRSCFICGSPAKECARARKHSVEQLQEEVSKLINQDIDF >gi|260196064|gb|ACQN01000003.1| GENE 65 64274 - 65461 1134 395 aa, chain - ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 32 378 33 382 443 181 35.0 2e-45 MRRFRDKLKIAWLVALCIIGIINLTFFNVVKADEKPVNVKAAFMMDEKTGQILYQKNATR KYAVASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWRFSNVPLIYNERYTVR SLIESMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGN LKLPKIDDNQENQFSAKDMALISKYLIDKYPEVLNITKTKYANFKISQDNEIKMENIIYM LEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVPGEYSNQFIQTNNM IDTVFDKYQLVKINKNNLPKKYQKITITSKKQKKKISVVPETDSALWLAKDQKLANLSPK LEVKKQNKLKKGSIVASLIYKLDNHSSVKINLQKK >gi|260196064|gb|ACQN01000003.1| GENE 66 65584 - 67038 1682 484 aa, chain - ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 7 484 5 472 472 451 53.0 1e-126 MKHLEKVNYKGFIIPIIVGLIFWFTTPVRPAGVTVQAWHMLAIFLATIMGCIFKPLPIAA TTLIGYTLTIFLGLAPIKDVVVKGHTVDLSALSAFSNSAAWLIAMAFMLSRGIIKTGLGR RIAFYFIEWFGHKSLGLGYSVAAIDLVVSPATPSNTARAGGIVFPLVESLAENFDSKPND PSRKKMGSFLTFVEFHANLITSMLFLTAMAPNLVAVELAKSLGVNITWIGWFEATCVPAL LALLIVPFIIYKMYGPDIKETPNAKEWASAELKKMGKLSVPEMWMAGIFLLTLVLWMLSS SISLDATLIAFISMSLLLLTGVLSNDDFLSEKGGWNVLVWLSILVYMANRLTKFGFIKWL SETISKSVGHDNWIIVLIILGVLLFYTHYLFASATAHNTAMYGPFLAVALSAGAPKMAAA MFLAIFSAIMASTTHYANGPASVLAGSGYVEQGEWWKMNFILGLFYIVFFIVFGLGWMKI IGLW >gi|260196064|gb|ACQN01000003.1| GENE 67 67313 - 68734 1323 473 aa, chain - ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 7 473 5 471 472 459 56.0 1e-129 MKNLAKVNYRGFIVPVVVGVLLWLLTAVRPTGISVSGWHLFAIFLATIIACITKPLPIVG VAIISYVLILLTGLVKMKFALTAFADSTPWMIAMAYMIARGFVKTGLGRRIALIFVRNFG KKTLGLGYSLSLIDLLVAPATPSNTARSGGIVLPIIQSLSETFGSKVGDGTEKKIGSYLV YNEFHANTISSSLFMTASAPNVAAVGLAEANGVHISWFEWLFAALVPGLIAFLVVPFIIY KMYPPEIKETSNAKQWADHELEKMGKMTIAEKLMLTIFVLALVLWMVSSFIGLDATLVAF LAVALLLLSGILTTDDLLHETGAWNVVVWFSILIFMASQLSVHGGVIHWLQLFIKHSIKG MNPMLVMAILVLVYFYTHYFFASGTAHVVAMYAPFLLIAQGEGVPVMFAAIMLGITGAIY QSTTHYSCGPATALFASGYVKQTDWWKMSFVLGLFYLVLYGVIGGIWMKIIGL >gi|260196064|gb|ACQN01000003.1| GENE 68 68904 - 70295 2110 463 aa, chain - ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 10 461 54 504 506 429 53.0 1e-120 MAKFVFTPKESSEIAASYDAVIVGAGGTGLTAAMQAHELGLKVAVFEKNEGLGGNTNKAS SGMNASESNVQYAQGIIDNKEDFYKETLKGGGLLNDRDMLRYFVDHSAIAISWLEEHGID LTDLTITGGMSKKRAHRPASMAPVGGYLITGLLKKIQEEDIPVFNKAKVTKLVEADKSVT GIEVETESGLKKVSAKAVLLASGGFGASKEMMKKYRPDLVDYKTTNQAGATGDGLKLAEA VDAQLMQMEYVQVHPTAQTDGARTFLIGEAVRGEGAILVNRAGKRFVNELNTRKIVSNAI TGLNEDGAYLIFDQGIRDHVKAVEFYDAIGLVKHGAGLAELANEIGVDAANLEATVKTWN EAVKASNDTEFGRSTGMDRGIEKGPFFAIHIHPAIHYTMGGIHITPETKVLDTNGNVIKG LYAAGEVSGGLHGNNRIGGNSIAETVIFGRQAGMQMAKFAREN >gi|260196064|gb|ACQN01000003.1| GENE 69 70313 - 71716 1784 467 aa, chain - ## HITS:1 COG:lin2328 KEGG:ns NR:ns ## COG: lin2328 COG0114 # Protein_GI_number: 16801392 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Listeria innocua # 7 460 3 455 455 445 52.0 1e-124 MAEQEYRIESDTIGPVKIPKDALWGPQTERSRNNFPSGELMPLQIIRAFLHLKKAAAQSN VEVGDEPEEKGKAIEDAIEHLLALSDEDLRKDFPLHVLQTGSGTQSNMNVNEVVANLANK LHPGLNILPNDDVNRGQSSNDTYPTAMNIVAVEAIDKLEPAIEHLISELKEKQNKYWKTV KVGRTHLQDATPLTFGQEVSGYISALKHDLEYIRQLKPTLYELAIGGTAVGTGLNAAPGM TEKIAGKLSEVYGHEFKVDTNKFWGLAHHSGIDVMHGALKTLAADMFKIAQDIRFLASGP RAGYNELNIPANEPGSSIMPGKVNPTQAEAVTMAAAKVFGNDTTITFTASQGNFEMNVYK TVMIAAFLDSCDILTGTITGFADKMIHGLTVNADRMDDLLENSLMTVTALSPHIGYHEAA TIAQTADKEGTTLREAALKSGKVTEEQYNEWMDLLKMTNIDRSKPED >gi|260196064|gb|ACQN01000003.1| GENE 70 71888 - 72589 998 233 aa, chain - ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 231 1 231 231 233 63.0 3e-61 MLKLLQQYLPNVFSLGWSGDAGWGTAIFQTLFMTFWSAIFGGFLGLIFGVILVLTEEGGI LANKFWYNWADKIVSIFRAIPFVILLAFIAPVTQKIVGTQIGIKAALVPLTLGVFPFYAR QVQVALKGIDPGKIEAALSLGATTKDIIFEIYLKEARSELIRVSTVTVISLIGLTAMAGA VGAGGLGNTAISYGYNRFNNDVTLVATILVIILIFITQVVGDFLANKFNHQVR >gi|260196064|gb|ACQN01000003.1| GENE 71 72582 - 73640 1269 352 aa, chain - ## HITS:1 COG:SPy0320 KEGG:ns NR:ns ## COG: SPy0320 COG1135 # Protein_GI_number: 15674484 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 2 344 4 350 354 322 51.0 6e-88 MSIIELNNISVTFKQKKEVVKAVDGVTLKIQKGDIFGILGFSGVGKSTLVRTINLLQKPS AGDVVVQGTTFVKNGQVAISGKELQKHRRKIGMIFQSFNLLNETSVLENVAFALRHSNLS DEEIEEKSLRLLELVDLKEKADFYPSQLSGGQKQRVAIARALANDPEILLSDEATSALDP QNTNQILDLLKKLNKELGLTIVLITHQMEAVKKIANRVAVMEHGHLIEEGSLKQIFLEPK KELTRNFVGGSSAAISTLNKLNLDKLSENEAIYQLTYSLSNVTKSIIIELYSKLGVEVSM LYGNVELLNEEPIGTLVVLLKGDFEKQKAAREFLAKENVLVTELDERGQINA >gi|260196064|gb|ACQN01000003.1| GENE 72 73650 - 74501 987 283 aa, chain - ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 30 283 31 286 286 271 59.0 1e-72 MRKKRRKNRIIASVFAIFLLVAGYFSFVYQAPKESSKTVTIGVVGQTKEDAKIWDSVAKT AKAKYGITIQIKNFTDYNQPNKALLNGDIDLNAFQHFAFLDAWNKANKADIVSIGKTIIA PIRLYSLKYKSINSLPDGATIAVPNDASNESRALYVLKNAGLIKLKSGKKIVSVADITSN PKNLQIKEVAADQAGRIIKSVDAAVVNNSYAAPAGLGDKQTIYVEPVNKDSEQWINLIAA RKNDKNKQIYLDVVKAYQTKKTKELVKKYYGNTELTGWDIKIK >gi|260196064|gb|ACQN01000003.1| GENE 73 74894 - 75259 490 121 aa, chain + ## HITS:1 COG:L153973 KEGG:ns NR:ns ## COG: L153973 COG1970 # Protein_GI_number: 15674083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Lactococcus lactis # 1 121 1 122 122 120 54.0 6e-28 MIKEFKDFISRGNVLDLAVGVIIGSAFTSIVNSLVTNLLNPFLGLFLGKIDLSNLILKVG GASFKFGSFINSIINFLIIAFVVFLIVKSVNKLMPKPEQKPAGPTPEQEYLREIRDLLKN K >gi|260196064|gb|ACQN01000003.1| GENE 74 75374 - 75961 755 195 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0843 NR:ns ## KEGG: LGAS_0843 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 5 195 23 244 244 101 36.0 2e-20 MGNFFLWIFLSIIGYFIAKKWLFKAQPHSIRIYAVVFSISALGLAVTTHPTTKPATHYLV KKVKADNFSSNKATNESLNAEKSSLQKQADQLKEQVSSAEEESEAIASSKETQSSKAAAE SSSIAQAKAQEQRQSTTKINQGDFNTATTGRIVGNARSKIYHVPGQAGYNMNSANAVFFN SEQEAIAAGYRRAKR >gi|260196064|gb|ACQN01000003.1| GENE 75 75961 - 76824 671 287 aa, chain + ## HITS:1 COG:no KEGG:LAF_1832 NR:ns ## KEGG: LAF_1832 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 43 284 48 289 292 315 64.0 1e-84 MKNKKLLISILLTILFFGAGINGNLSSVQESQKPKVITKVKYDKSEVKKSEQLSDENAEL SDEIQELKTQIKDYKKALKKLGKASPTDLPQSEKNNANLASLNYNGEDVITVNNNNPSFT KSDLSTANGAWQSYGDLDNLNRATSANALLNISLMPKAKREPLHVNPTGWHNKRISGGWL YNRCHLIGYQLTGQNNNWKNLITGTRQLNDPDMLKYENEVAGYIKESSNHFVRYRVTPIF RGNELLARGVQMEAQSTGENTIRFNVYIFNVQPGYNLNYNDGTSSAA >gi|260196064|gb|ACQN01000003.1| GENE 76 76874 - 77020 78 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKITAFLISLVISAALLFIFRSNIWLAITFTVFVGISVAGLFSSFAK >gi|260196064|gb|ACQN01000003.1| GENE 77 77157 - 78086 1048 309 aa, chain - ## HITS:1 COG:SPy0510 KEGG:ns NR:ns ## COG: SPy0510 COG0463 # Protein_GI_number: 15674614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 1 308 1 307 308 349 54.0 4e-96 MDKLSIIVPCYNEEESIPLFYEAVQKVVTKMDIEPEYWFVNDGSHDNSLAEMRALHEKDE KHVHYISFSRNFGKEAGLLAGLDAATGDYVVVMDVDLQDPPEFLPEMYKELQSGEYDCIG TRRVDRTGEAKIKSFLSDMFYKCINKISNTEIVPGARDFRMMTRQMVDAVLSMREYSRFS KGIFSWVGFKTKYLDYHNVERVAGESDWSTWQLFKYAMDGISDFSQAPLSLAVWTGSVTS AISVISIIFVIIRKIMSPMSSIFGWASMVSIILFLGGIQLLCIGIVGKYIGRIYLQVKHR PIYIVKEKK >gi|260196064|gb|ACQN01000003.1| GENE 78 78196 - 78612 386 138 aa, chain - ## HITS:1 COG:no KEGG:LJ0167 NR:ns ## KEGG: LJ0167 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 8 135 7 133 145 130 58.0 1e-29 MKEKITSLIKSDDFREFVIYGFIGVFGLFIDFGLFWLLTKFTSLPVEIANFISSSCALVN NFYMNTYLNFHVRDHLLSRFIKYYIIGQITTLITTTCLFIFVTLMHQNEMIVKVISTFLA TMLQFVVNKVFTFKKNEL >gi|260196064|gb|ACQN01000003.1| GENE 79 78621 - 79124 494 167 aa, chain - ## HITS:1 COG:lin1987 KEGG:ns NR:ns ## COG: lin1987 COG0262 # Protein_GI_number: 16801053 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Listeria innocua # 1 166 1 159 160 124 40.0 8e-29 MLSFVWAEDNKHQIGYKGHLPWHLPADLAHFKEKTMGKTMVMGKKTFLSLPFVLPKRKHL VLTHDEALIQKYKTNNQVNFVTSMEQLRKYLLSHKEDEVAVIGGVSVFEGLKDIVDCLEK TEIDGEFKADTIMPKIDYSAFKLIKKESFTADKKNPYDYSFLTYLRK >gi|260196064|gb|ACQN01000003.1| GENE 80 79134 - 80090 1009 318 aa, chain - ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 8 318 4 314 314 415 61.0 1e-116 MAVLEQPYLDLLKNIMETGHDKTDRTGTGTRSRFGAQMRFDLSEGFPLLTTKKVPFGLIK SELLWFLRGDTNIKFLLEHNNHIWDEWAFKKWVNSDDYHGPDMTDFGLRSQADSEFKKQY DEQMQIFTKRILEDADFAKKFGNLGDVYGAQWRHWKKRSGGSIDQIQEVLNQLTIHPDSR RMIVSAWNPEDVPTSALPPCHTLFQFYVADNKLSLQLYQRSGDMFLGVPFNIASYSLLLS LVARQTGLEVGEFVHTLGDAHIYKNHFDQVEKQLSRDPFDSPKLWLNPAKKDISDFEMED IKVVDYKHHGVIKAPVAV >gi|260196064|gb|ACQN01000003.1| GENE 81 80197 - 81063 1157 288 aa, chain + ## HITS:1 COG:MTH692 KEGG:ns NR:ns ## COG: MTH692 COG0330 # Protein_GI_number: 15678719 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Methanothermobacter thermautotrophicus # 30 283 27 293 318 141 34.0 1e-33 MLFSISTLLITIIIVALIIFSCSIVPQNYEGLVETLGKYSKTERAGLIFIIPFVQRIRKV SLALQPLEISKYSIITKDNAEVSTSLTLNYQVTDSFKYFYNNTDSVESMVQLVRGHLRDI IGRMDLNDALGSTSQINAQLAEAIGDLTNVYGIRVIRVNVDELLPSKEIQRAMDKQLTAD REKTATIAKAEGEARNIELTTKAKNDALVATAKAQAEAIKTQADAEKYRIEQLKAALANA PEDYFKNQSIAAFKDLANGENNLIVMDKDNLTQLGNIPAVKEIWKKQD >gi|260196064|gb|ACQN01000003.1| GENE 82 81124 - 82506 1589 460 aa, chain - ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 8 459 5 455 459 458 56.0 1e-128 MAENKAPKLKRSMTAGQMEMISLGGAIGVGLFMGSTSTIKWTGPSVLLAYIFVGLILYIV MRALGEMLYVNPGTGSFADYATEYVHPLAGNMAEWAAVFQYIVVGISEVVAATEYLKFWW PKTPALLVGIIIIGFLLLANLASAKAYASLEFWFSMIKVVTIVLMIIIGLLVILLGFGNN WKPVGFSNLWSHGGFFTGGLKGFIFSMSIIVGSYQGIELIGISAGEVANPKQAVVKSVKS VLWRILIFYVGAIFVIVSIYPWNQLSAIGSPFVETFTKVGITGAASIINFVVLTAALSGA NSGIYSSSRMLFKLANEGDAPKIFGQISKKIVPSKAIVGITSGILIGFVLNFILSTVNKT MDEIFVIVYSSSVLPGMVAWFVILMAEYKFRKNNPEIMKDHPFKLPLYPYSNFFAFAVLV LIVIFMFLNDETRISVTVGALVLLASATEYYFRRMHKKNK >gi|260196064|gb|ACQN01000003.1| GENE 83 82499 - 83899 1744 466 aa, chain - ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 10 456 5 451 459 468 56.0 1e-131 MDKKTSSAPQLKRSMSAGHMEMISLGGAIGVGLFMGSTSTIKWTGPSVLLAYMFVGLILY IVMRALGEMLYVNPGTGSFADYATEYVHPMAGYMAEWANVFEYIVVGMSEVVAATEYLKF WWPQVNVFWSGVIIIAFLLLANLASAKAYANLEFWFAMIKVVTIILMIILGFLVIFFGFG NGGHPTGFSNLWSHGGFFTGGVQGFFFSMSIIVGSYEGIELLGISAGEVENPQEAVVKSV KSVLFRILIFYVGAIFVIVTIYPWNQLSSLGSPFVTTFAKVGITAAASIINFVVLTAALS GANSGIYSSSRMLFKLAHEGDAPKVFGYLSKHVVPSRAIMGISSGIFLGFVLNVFASQFS KSTEDLFVIVFSSSVLPGMIPWFVILLAELRFRKNNPELLKDHPFKLPLYPYSNYFAFAM LLVIVGFMFINSETRVSVIAGLLVLIVAAVVYVLRHGLKVGGDSHG >gi|260196064|gb|ACQN01000003.1| GENE 84 84000 - 84701 538 233 aa, chain - ## HITS:1 COG:BS_ydfK KEGG:ns NR:ns ## COG: BS_ydfK COG1811 # Protein_GI_number: 16077612 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, possible Na+ channel or pump # Organism: Bacillus subtilis # 6 221 1 215 229 138 38.0 1e-32 MGREILIGILINGLAVVIGTAIGCLFKQHLKEKYIDALWLALGLAALGVGVNTVVNYMNK SNFPLLFVVSLTLGALIGKFFEVDQHVESLLETKFTSELAKGVATATFLDCIGALSLLGP INAAKTGDLTFLLTNASLTFVCAIIFGASFGWGMLLETPILLGWFFLIFCLVKVGFANFF SMELVNELCLVGGFLITASGISLLKIREIKSLDLLPSLLVPIFYFLGKMIFHY >gi|260196064|gb|ACQN01000003.1| GENE 85 84875 - 86413 1452 512 aa, chain + ## HITS:1 COG:no KEGG:SMU.739c NR:ns ## KEGG: SMU.739c # Name: not_defined # Def: hypothetical protein # Organism: S.mutans # Pathway: not_defined # 3 510 8 509 518 339 56.0 1e-91 MKRKKLKLISIPLIALTIAGETAIITNQNVSAANTTPPSMPSGSKKGGANTQSYDYTGSL SASVLANSTSRKLLNKTLSSSSKDKNVALIENAGTLTLNRVTLNKTGSSSNDDNNNFYGT NSVLLATGKKSTAYIKNSKIKSNATGANGIFASNKATIYANNTSITTTGSANSRGLDATY GGTIIANKLSISTKGDHSAALATDRGGGNVSVTNSKLKTAGSGSPLIYSTGNIEVNNVTG TATGSQIAGMEGYNNIYISNSKLSSTNNKKTGSDPIKNGVILYQSMSGDADTSTSESAKF QAVNSSLSTSIDSGAMFYVTNTSANVVLKNTKLNFNSNKVNLLTIEGNNSNFWGSAGSNG GKVTFTGIKQKLNGNISVDNISSLKLYLLKNSTYTGKTSITTNSKATSSSKTSAPITINL TKGSKWVVTGNSTVSNLNVEAGAKIVDNSGKTVTIVNSAGKTLVKGTSKYKITVNGSYSK KVTTSSANKLSKSSVSRTAFDKYFNTKTEFSY >gi|260196064|gb|ACQN01000003.1| GENE 86 86754 - 87323 272 189 aa, chain + ## HITS:1 COG:no KEGG:LJ1417 NR:ns ## KEGG: LJ1417 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 189 1 191 194 158 47.0 1e-37 MNLSWLIALILSATILFILIYKLENSKKFRHLDSSWHQRLIHPVQGSFWSIIEFLNEPKL IAFWDTLLAAVLLFNGEIKKAIWVLVTLAITDIIGILLKHTIKRKRPSENTRQSYSFPSG HVLSITSLSLIIWQIYGGILGVSLFFVLFSLWCLVVFSRIILKAHYPSDIVGATALSIFC FLLTMPFIA >gi|260196064|gb|ACQN01000003.1| GENE 87 87832 - 88662 950 276 aa, chain - ## HITS:1 COG:SP0742 KEGG:ns NR:ns ## COG: SP0742 COG1307 # Protein_GI_number: 15900637 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 5 275 4 279 281 213 41.0 3e-55 MEEIKLIVDSSSNLKSDSKSNLTVVPLTINLGNQTFLDNDQMDYSAFLDKIYENKEKSGT SCPNLQEWLDALAGSKKAIILTVTSGLSGTYSSAKQAVEIYQEENPDSEVLVLDSKSAGP ELKLLVDKLIELVQNTSFNSIGESIKTYQASTHLLFSLESLHNLAVNGRISSAAARIAGM LHIRMIGEASAEGTLEPLGKARGSKKTVLELFKNMEKQNYSGGKVYIDHVDNLKDAESLK EKISEKYPEAQIEIGICHGLCSFYAEKGGLMVGFEN >gi|260196064|gb|ACQN01000003.1| GENE 88 88779 - 89288 389 169 aa, chain + ## HITS:1 COG:no KEGG:LAF_0389 NR:ns ## KEGG: LAF_0389 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 9 166 8 165 171 149 49.0 4e-35 MENSSILNQIQSDVAKFSLPAFSEIPDIGLYLEQTCQFINQSLAPFSELYLTNSMISNYV KKGIIEKPIKKRYSRQQIARLIFIAFAKPVLSLDNLKVAIKMQDNSYNIDVAYQYLREES INCLEYVYQLKTQLDNIGKTQTTEKEILRNIILAAVHEIYLNSYFSVTK >gi|260196064|gb|ACQN01000003.1| GENE 89 89352 - 91628 2223 758 aa, chain + ## HITS:1 COG:Ta1045 KEGG:ns NR:ns ## COG: Ta1045 COG0474 # Protein_GI_number: 16082076 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Thermoplasma acidophilum # 7 731 21 756 780 388 33.0 1e-107 METQLHGLTSAEAEKRLKKDGPNEVPEPEFNFWKAFLSKLWNLSAWILEAALLLELVLGK GIQAGFVLLMLLFAAYNGATQKKKSRRVLNDISHELTPTVAVERDGKWIKLNSKQLVVGD LINLKRGDVLAADVSLKDGKITCDESSITGESAPVNKQLNDTAYAGTTVVDGSGLAIVTA TGANSRSGKTINLINQSAAPGHLQQLLTKIIFYLCMLSLTLTIIIIIAAFMRGEGIHGVI QMLPFLAMMFIASIPVAMPSTFAISNSFEAKRLSKEGVLTSDLTGIQDAANLNLILLDKT GTITENKTAVSSLTNLSSLSDSEVLQFAEAATDKRNTSIIDAAIIEYSEQKGLTSLTPEK FVPFTSDTGYSEAVVNGQNLKLGSFKQLSLIDTNANEKIKDIDFTAGRSVALLIDNKLAA VFILQDKVRSDSKAALAELKKRGIRPIMLTGDNQRTAAAVAKQVSLTGNVISIHDFNEQT DLDSLAGIADVLPEDKLKMVKFFQEKGFIVGMTGDGVNDAPALKQAEVGIAVANAADVAK RSGKMVLLDDGLMPIVKILDAGHRVYQRMTTWSLTKLSRTAELTMILTFGYLLFGYLPMA LNAMVIYTIMNNMVTMMIGTDNTHITYKPENWNIDRMAKVSMSLASGWTLIGCLFVWFMN NKLGFTQGQVGTMVYVYCVLSAMLIVLITRTKTYFWQSHPSRLVGTVQIIDVALTFALAL LGIAMTQISIINLGLVIIVSLISAIIIDLIYQPIMKNR >gi|260196064|gb|ACQN01000003.1| GENE 90 91686 - 92213 739 175 aa, chain - ## HITS:1 COG:FN1483 KEGG:ns NR:ns ## COG: FN1483 COG0503 # Protein_GI_number: 19704815 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Fusobacterium nucleatum # 3 172 1 170 170 218 59.0 6e-57 MTVDFKKYIASVQDFPNKGIVFRDITPILSDGEIFRAATHELAEYAKKRGADVIVGPEAR GFIVGCPVATELGVGFVPARKPHKLPREVERASYDLEYGSNSLEMHKDAIKPGQKVVICD DLMATAGTLHAAIELIERLGGEVVGAAFYVELPDLKGREKLPNIDIFSLVQYHGA >gi|260196064|gb|ACQN01000003.1| GENE 91 92231 - 94492 2003 753 aa, chain - ## HITS:1 COG:BS_yrvE_1 KEGG:ns NR:ns ## COG: BS_yrvE_1 COG0608 # Protein_GI_number: 16079816 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Bacillus subtilis # 1 544 6 558 560 394 38.0 1e-109 MTWKKREATELSSELIEKYQLSPLTAKLFSLREINTDEKLNYWLNSTEEDFADPYLMHGM QETVDRINQAIDNFEKITIYGDYDADGITATTIMYETLAILGADVHYFIPDRFKDGYGPS MKRYQQIVADGTKLIITVDNGVTGIEEVRYAQDNGCDVIVTDHHSFQEQMPEAKAIVHCN YPNQKYPFDDYCGAGVAYTICRALMEDTMPELIELAMIGTIGDMVKVSGEGHIIVKRGLE LLNHTQRPGLRALIKEAGLELGNIDETDTGFQIAPRLNATGRLASARLAVDLLLSDDLEE AQKLAKKVEELNNERKELTQKVYESALNQIKKFGYNSQNTLVLYDSSWHEGVLGLVANKI VEKVHKPTILLTKNEDGLVKGSGRSNAGFNLFEALFKLKDSLFENFGGHDFACGLSLKED KINSLRKAFENSYQASSNNAIDYYDLDLDTNSVDLSILDDMKKVGPFGTDNPEPVYCVKE PEISSLFVIGKDKNHLKFNVGNLKIIGFNMAYLTQNLLPYVTAIYLNISKNMWQKKLSLQ GQLKSIDFGVPSFSLGKNKAIDFRRQRHILGFADRFVLFDEHNLNKAVGQLEIDQDKIIL AKDYEGSGEIVTLLDAPHNRQELDQVLKNEYQQLYLRFMIDQLPISMMPSRTEFAKTLKY VYSHPNLKPEDYRLVAPYLGLDGDSIYFILRVFLELEFVKMDKAELVPNKVANHKKLTDS RYFLGTQSQLNFVTSLRTMPSSQLLAYVNQHLK >gi|260196064|gb|ACQN01000003.1| GENE 92 94492 - 95202 768 236 aa, chain - ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 11 236 44 280 287 138 37.0 1e-32 MTDDNKQKLSKKSKTSKKTILLRVLAVILFIVGIILVFNGPIQEYFVKQNQTSTLQGLTK KTVAANQKKKGMFDYSKVQDIDIAKVTRSRVKNTANAIGAIAIPKVNLYLPILLGLSDDS LSTGAGTMREDQVMGKGNYPLAGHYMTAKGVLFSPIEDTKIGQKVYLTDLKKVYVYRIYM KRVVDPTAVWLVNNTKSNIVTLITCADGGINRWAVRGKLIQTKKATTKNLSVFKLK >gi|260196064|gb|ACQN01000003.1| GENE 93 95204 - 97042 2065 612 aa, chain - ## HITS:1 COG:L0159 KEGG:ns NR:ns ## COG: L0159 COG0481 # Protein_GI_number: 15673090 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Lactococcus lactis # 1 607 1 607 607 806 65.0 0 MDLKKLKDYQKHIRNFSIVAHIDHGKSTIADRILELTDTVAQRQLKSQMLDDMPLERQRG ITIKLNSVEVKYHAKDGEDYIFHLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVQAQ TLANTYLAIDDDLEILPVINKIDLPSADPENAKMEIEEMLGLDASDAVEVSGKTGLGIPE LLERIVTDIPAPQGDLEAPLKALIFDSKYDDYRGVVLAVRIEDGMVKPGDEIEIMNTHKK YEVTEVGVSNPHPVKKDMLVAGDVGYLTANIKSVRETRVGDTITSAKKPTEEALPGYRQI PPMVFSGMYPVDNSKYDDLKEALEKLQLNDAALEFEPETSTALGFGFRCGFLGLLHMDVV QERLEQEFDLDLIMTAPSTDYHAIMNDGTTKVIDNPSDLPDAGEYKEVQEPYVKAEIMVP NDFVGPVMELCQRKRGEFQTMDYLDKYRVNVIYHIPLAEIIFDFFDDLKSSTKGYASLDY EIIGYRATDLVKIDVLLNKEPIDALSFIAHRSDAQARARQMTSLLKKLIPRQNFEVDIQG AIGAKIISRATIKPYRKDVTARIHTGDPDRRAKLLDKQKRGKKRMKAVGKVEVPQDAFMA VLKMNDDDIKGK >gi|260196064|gb|ACQN01000003.1| GENE 94 97219 - 98355 1690 378 aa, chain - ## HITS:1 COG:SPy1759 KEGG:ns NR:ns ## COG: SPy1759 COG0484 # Protein_GI_number: 15675605 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Streptococcus pyogenes M1 GAS # 6 377 5 375 378 355 53.0 1e-97 MATSRDYYDILGLDKNASEQDIQRAYRKLSKKYHPDINKAPDAEEKFKEVNEAYEVLHDK QKRAQYDQFGQAGVNGQAGYGAGNGQYGDFSNFSGFGDIFSDIFGGASQRHVDPTAPVKG DDLDYTMTIDFMDAIKGKTSNVTYTRSETCEVCHGTGAEKGTHPITCDKCHGSGYMTVTQ QSMLGVIQRQTLCDKCHGKGVIIEHPCATCHGAGHTDKKQTLEVKIPAGIDNGQQIRLSG QGEAGKNGGPYGDLYIVFRIRPSKDFTRRGNTIYTTVPISFAQATLGDEIKIKTVNGETS LKIPAGTQPGAKFTIRGEGVPYLRGDGKGDQISTVEVVIPKSINDKQKQALVDFVKAGGD SITPQEKNFFERLKDKLG >gi|260196064|gb|ACQN01000003.1| GENE 95 98427 - 100268 2286 613 aa, chain - ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 613 1 608 611 786 73.0 0 MSKVIGIDLGTTNSAVAVLEGKEPKIITNPEGNRTTPSVVAFKDGEIQVGEVAKRQAITN PNTIVSIKRHMGEAGYKVKVGDKSYTPQEISAMILQYIKKFSEDYLGEEVKDAVITVPAY FNDSQRQATKDAGKIAGLNVQRIINEPTASSLAYGLDKDEEDEKILVYDLGGGTFDVSVL ELGDGVFQVLSTNGDTHLGGDDFDQKIMNWLIENFKADNGVDLSKDKMALQRLKDAAEKA KKDLSGVSSTHISLPFISAGESGPLHLEADLTRAKFDELTHDLVERTKIPFDNALKDAGL TVNDIDKVILNGGSTRIPAVQEAVKKWSGKEPDHSINPDEAVALGAAVQGGVISGDVKDV VLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQIFSTAADNQPAVDIHVLQGERPMAA DNKTLGRFELTDIPAAPRGVPQIQVTFDIDKNGIVNVSAKDMGTGKEQKITIKSSSGLSD EEIKRMQKEAEEHADEDKKKKEEADLRNEVDSLIFTTEKTLKEVGDKVPADEVSKVKDAL EALKKAQKDNNLDEMKEKKDALSKVAQDLAVKLYQANGAQGQAGQAGPNPSDNNDGNNGD TVNGDFKKVNPDK >gi|260196064|gb|ACQN01000003.1| GENE 96 100320 - 100901 759 193 aa, chain - ## HITS:1 COG:L0273 KEGG:ns NR:ns ## COG: L0273 COG0576 # Protein_GI_number: 15672935 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Lactococcus lactis # 41 193 32 179 179 104 46.0 8e-23 MSKKEFPSEKDLDQKPKEDLKHKETKITSSKADKDTQKVGEDLAKEIEQLKAAKAELEDK YLRSEAEIQNMQNRYNKERAQLIKYESQSLAKDILPAVDNLQRALSVKVDDEASKQLKKG VEMTLDAMVKAMADHGITEIKAEGAKFDPNLHQAVQTTVAENDEQKDHVVQVLQAGYQYK DRTLRPAMVIVAQ >gi|260196064|gb|ACQN01000003.1| GENE 97 100915 - 101958 1063 347 aa, chain - ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 343 1 340 345 230 38.0 3e-60 MLTERQELILKTIIKDFTQTHEPVGSKTVMSQLPMKVSSATIRNEMAVLEEQGLIEKTHS SSGRIPSSDGYRYYLDHLVEPLQLPESVYNQIVCQLDRPFHQVNEIVQEAAKILSDLTNY TAFAEGPESRHVLITGFRIVPLSNRQVMAILVTNNGNVQSQVYSLPRFTNGEEIEKAVRL INDELVGKSLSAVSPEMLSELVSHQLGGNADDLLSLLADVLKDAASEQMYVDGQINLLNN ATGNVQDIRSLYEMFDQNDMISSLLSFEGDDSDEHFPVQVKLGSELPSDLLKNYSLLTAS YSVGSHGRGTIALLGPTNMPYSQMIGLMEYFRQELAKKLLDYYGKFQ >gi|260196064|gb|ACQN01000003.1| GENE 98 102078 - 103016 564 312 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 309 1 314 317 221 39 2e-56 MEIIHLSYPIKKELTRTHVVLALGFFDGVHIGHQKLIKRAQEVAKKKSLPLMVLTFDRHP KEIYLGRTDFEYLDNLPEKAEKMEKLGVDYLAVAPFTEGFSKLSPQEFVDQVIIKLKADA VVAGFDYTYGPKDIANMENLPYFAKNRFEIVILPEQTSGGCKIGSTAIRQAIRNGNLELA TNLLGSHYIMSGIVGHGLRNGHKLGFPTVNLVLNDRKVIPKIGVYATRTLVHGKWYDSMT SVGYNVTIQTGKKIYIESHLFDFDEDIYDEEISIEWYHYTRGEIKFSSLDELKEQLIKDE KEIRKYFKNIKN >gi|260196064|gb|ACQN01000003.1| GENE 99 103035 - 103922 849 295 aa, chain - ## HITS:1 COG:SP1212 KEGG:ns NR:ns ## COG: SP1212 COG0130 # Protein_GI_number: 15901075 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 287 1 287 292 237 43.0 2e-62 MINGILVINKSKGMTSGDVVYKLRKILKTRKIGHAGTLDPEVEGVLPIAIGQATKLIELM HERPKSYTGRGLLGFSTDSYDTEGKVLQRKAVSEKIPLEEIQKGMNSFLGKIDQVPPIYS AVKVNGKRLYEYAREGIQVTRPVRSVEIFKYKLLEPVNYQNEQEEFGFNIECSKGTYVRS LVNDLGEKLGYPAVMTYLQRTSSSGFNLEKAVKLEELEANPELVLKYILPIDSFFADYET IDMSEQIWKKVKNGNAISLRNDAKKIALRYNKKVKAIYELKSHTYRPYLMLLQNE >gi|260196064|gb|ACQN01000003.1| GENE 100 103960 - 104316 444 118 aa, chain - ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 3 114 6 117 118 102 46.0 1e-22 MKHRIGRVEGEILRELSKILQKKIRDPRLSDVTLTAVECTNDFSYATVYYSLLTEDGNKE KEVAEGLEKAKGLMRHLLGQELTVYKVPELIFKRDTSVQYGSKIDKLIAQLKKQENDR >gi|260196064|gb|ACQN01000003.1| GENE 101 104328 - 107027 3163 899 aa, chain - ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 113 899 7 782 782 701 52.0 0 MAKQRIYELAKQLGLNNKVLVDKAKELGFNIKNHMSSLSDTEVNELKNKVKPSTPAKSQN DEKKTEKKDNKIKLSVSSIRRPASQSKNHSKHQHSDQAKKRSNDSSNKRRNRHESNKKQN NKSPKVNKARDLLAELQQKQRAEETTLAKEFEKARKIWHEEKNKVQNEDTENQNSQKKDT NEVTNQPEEKKTKKVLGPKILKPSPARNRPKTEENKQKQNQKSKPKRKPAMNRTPQIPVM PEESVKPDSRRNGNGHGRNTGKPGRKGRDNNNFDRRNEHSDKMERRKRKNKHNNHAEEVR KPKTVRKERPLPEVLVFEEGMNAQDLGKLLHREPAEIVKKLFLLGVMTNQNQSLDKDTIE LLAAEYGIESKEKVHEDISDIDNLYQKEVEASKESKHQESRPPVVTIMGHVDHGKTTLLD RLRHTNVSEHEAGGITQKIGAYQVRVDDRLITFLDTPGHAAFSNMRARGAEVTDIVVLVV AADDGVMPQTIEAIDHAKSAGVPIIVAINKMDAPGANPSHVTEQLMKYNLIPEDYGGDTI FVKISAKTGDNVEELLQMILLQADVLELKADPHQKAIGTVVEARLSRGRGPVADILVQQG TLEVGDPIVVGNTFGRVRVMTNDKGRRVKKATPSMPVEITGLNDVPESADKFVVFEDEKT ARAVGEQRAQNALQKQREKVQHVTLDNLFDTMKRENMKEVGIVLKADVQGSVEALSQSLE KIEVEGVRVNIIHSGVGAINDSDVTLASASNAFIIGFNVRPTATAKSQAESDEVDIRSYS VIYKAIDDVEAAMKGMLEPTYEEKVTGNLTIRETWKVSKVGTIAGAFVDSGYIHRDSGIR VIRNGVVIYDGQVASLKRFKDDVKEVKQGFDCGLTIENYNDLKIDDELEAYEMQEVKPK >gi|260196064|gb|ACQN01000003.1| GENE 102 107032 - 107343 482 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526109|ref|ZP_03956158.1| ribosomal protein L7/L12 [Lactobacillus jensenii JV-V16] # 1 103 1 103 103 190 99 6e-47 MHNREKTINFLGLIQRAGKLVSGTDMVISSIKARKVKLVIIASDLSQATRQEVVSLAQKN SLPIIDEFSELEISQAIGKARKVLAVSDLGFSKALQKKLNEGV >gi|260196064|gb|ACQN01000003.1| GENE 103 107344 - 107619 331 91 aa, chain - ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 87 8 94 108 86 52.0 9e-18 MRKDLLTNTMQPKKDLVRIVINKEKEVSVDPTGKKPGRGAYVSLEPEKITEAQKNKILDR SLGTKIDDSFYKELFEYVDHQKARKELFGDK >gi|260196064|gb|ACQN01000003.1| GENE 104 107650 - 108756 723 368 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 352 9 361 537 283 44 6e-75 MTKEMLEAFATLETEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVDLDERKGNFKVMA IKTVVDEVQDDRLEVSLKDALEINKAYEVGDEIKFEVTPKDFGRISAQTAKQVIMQRLRE AERNHIVSEYSQYQDELVTGVVERHDNRFVYVMIDKVEAVMPRGDQMPNEVYNPQDKIRV LVTKVGNDTKGAQIVVSRTAPDMVKRLFEQEVPEVYDGTVQIVSVAREAGDRTKIAVKSD DPNIDPVGTCVGPKGARVQNVVNELGGENIDIVKYEDDPADFIANALNPAEVIAAQFGED EDEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESQVEFVDEDNGNSENAGE EKPADNEE >gi|260196064|gb|ACQN01000003.1| GENE 105 108777 - 109286 503 169 aa, chain - ## HITS:1 COG:lin1358 KEGG:ns NR:ns ## COG: lin1358 COG0779 # Protein_GI_number: 16800426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 12 169 1 155 155 132 44.0 3e-31 MLTLFSTEEDFLTKIIDLVTDLVTPLAEKRGDELVDVEYVKEKNQYYLRIYVDRGESGID IEEIAALSEIVSEELDKLNPDPFTEPYMLELSSPGLERPIKNERDWNKALNKYIHVACYQ KIDGQKSFDGTLLSRDNKKITLKIKIKTRTKELEIPIGAIANARFAIEF >gi|260196064|gb|ACQN01000003.1| GENE 106 109349 - 113668 3690 1439 aa, chain - ## HITS:1 COG:BH2418 KEGG:ns NR:ns ## COG: BH2418 COG2176 # Protein_GI_number: 15614981 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus halodurans # 8 1439 12 1433 1433 1474 51.0 0 MADSNKLFLRFLKQIKFPNSFSDNDLLEKGKIENVDVYGKKRKWDIHVFFDTPLKFDTYE ALIKLTEQEFSPFVDVNIMISTADGSDRYLPDYWSFVVSHTENMTVMARECLSSKKPVKV ASDWIIGVETPMLANSISQSDLDNLSFDLRRYGFFNIKLKLQVKNQNEEANLASLEQLEQ LQAEHEKSMNEAFKNIPPKPKRVAPNNNRQTREKNFGKADIPASEIIGMKEIEDGMRNIV IEGNIFNIDSHELKSGAYIFSGEITDYSDSIAFKKFVKDKEQIEMLKGIKPGVWARMSGS ALDDQYVHDVVFNINNFKIIEHIGRTEKYEGDKKRVELHLHTIMSQLDATNTATDFISTA KKFGQKAIAITDHGDVQSFPEAYSAGKKQEMKILYGLEANMVDDHALLVLNPAPMTYENR EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIERFDEFINPHHPLSETTINLTSITDEM VSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGFVNAALRRSGLKEITQPVVDTLEVSRL LHPEQTKHTLDSLCKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNDKFEQDDLGKMNDY AKFGQVYKRAKPAHMTVLALTQKGLKNMYKLVSLASTQYFYREPRTPISELRKYREGLLF GSGCWKGDVFITMMQKGYDEAREKAKFYDFLEVQPPAAYSQLIADELIKDENQLEEILKN IYKLGQELNIPVVATGDCHYLNPEDKIYREILIAAQRSNPNRNKPQPKLHFYSTQEMLDA FSFMGEDIAKEIVIDNTNKIADEIEDIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGK PLPKIVKDRIELELNSIISNGYAVIYLISQKLVAKSNKDGYLVGSRGSVGSSLVATMSGI TEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPDKKCPECGTELVKDGQDIPFATFLGFH GDKVPDIDLNFSGDYQPVAHNYIRVMFGPANSFRAGTISTVADKTAYGYAKHFEEERNLN LRSAELDRLATGTSGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLNAAWLTTHFDF HSIHDNILKFDILGHDDPTMIRMLQDLSGVDPMTIPPDDPGVMSLFSGTDILGVTPEQIA SKTGTLGVPEFGTKFVRGMLEETNPTTFSELLQISGLSHGTDVWLGNAEDLVNNGTCKLK NVIGCRDNIMMDLIHWGVKPEVAFSTMESVRHGRGISDDDMAVLKKNNNIPDWYIPSCLK IKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSHGKNSVKAAIK KIQDQGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIIDDHTILAPFNA VPGLGDNAAKQIVAARAEQKFLSKEDLRTRGKVSQTIMDYLEVNGVLEGMPEQNQLSLF >gi|260196064|gb|ACQN01000003.1| GENE 107 113678 - 115375 1955 565 aa, chain - ## HITS:1 COG:BS_proS KEGG:ns NR:ns ## COG: BS_proS COG0442 # Protein_GI_number: 16078720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Bacillus subtilis # 1 563 1 564 564 597 52.0 1e-170 MRQSNFFMPTLKEAPADAVAASHKIMIRGGYIRQVTAGVYSYLPLGYRVLRKAERIIEEE MDRINVPEMIMPHLLPATLWQESGRYYKYGDEMFKLKDRHGRDSLLGPTHEETFTEIIAK NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATKEQLDKQFDDQKAA YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID TFKQEPEELKPMEKVATPGCETIEQLTEFLRVPATRIVKSILYMADDQKILVLIRADKQI NEVKLGHLLDANEVREATAEELVNVTGSEKGGVGPVKADWADKIIADETVKDLYNIVVGA NETGYQFQNANLNRDFKVDEFSDIRTANEGEPDPVDHLPLQFTTSIEVGHIFKLGTYYTE TMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVEQNLTEHGVAWPKEIAPFALHLIQMKM KDEVQTKLAESLYAKFSDKYDVLYDDRNERAGVKFADADLVGAPLRITIGKKAADGIVEV KRPLDEKASEVTLAELEALVAKELD >gi|260196064|gb|ACQN01000003.1| GENE 108 115395 - 116648 1255 417 aa, chain - ## HITS:1 COG:lin1355 KEGG:ns NR:ns ## COG: lin1355 COG0750 # Protein_GI_number: 16800423 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Listeria innocua # 1 415 1 419 420 321 41.0 1e-87 MTTVLIFLVIFGLLVFVHEFGHFFVAKKSGVLVREFSIGMGPKLFQTRKKNTSYTVRWLP LGGYVRLAGKDDISTIDPGTNVILALDEAGKVVRIDASESDITISGIPLQVTKADLVKDL TIQGYENGDESKEFKYSVDHDATIIDNTGTELTIAPEDTQFQNAKIWQKIATNIAGPLMN IILGFVIFIIWSISTVGPSTTTVARTLEDSPASTVLKKNDQLVAVNGKKVTSFENFSERV AENKSKTMQLTIKRGNKTKTVSLKPKLVKYNGEKAYQIGIYAKSDERFSVKLARGWNMAV NTTGLIFKAVGNLISHFSLNKLSGPVGIYSQTSQVSKFGISAVVVFLAMISINLGIMNLL PIPGLDGGKLLLNLVELIRGKPISEEHETAVEIAGVVFLLILIILVTGNDIYRYFIK >gi|260196064|gb|ACQN01000003.1| GENE 109 116651 - 117457 811 268 aa, chain - ## HITS:1 COG:lin1353 KEGG:ns NR:ns ## COG: lin1353 COG0575 # Protein_GI_number: 16800421 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Listeria innocua # 1 266 1 261 262 211 47.0 2e-54 MKQRTITAVIALILFIPIVVAGGYWIDWLAAALAAVGISEIFLMKKQILLSIDFLLALLA TLTWTVPKTFFNVFPKEVTRPGIYFTMVMLLLTWTVLSKNKTSFDDVGVYTLASLYIGTG FHYLAAIRNIDHGSMLGLALLGYVFVVVWSTDIGAYMIGKKFGKHKLWPVISPNKTWEGS IGAVVCAIAFSAIYINVVPLVKDYSYLIWTSAILSIVGQMGDLVESAYKRYYGVKDSGKI LPGHGGILDRFDSMLFVLPVIALFFIKG >gi|260196064|gb|ACQN01000003.1| GENE 110 117469 - 118182 692 237 aa, chain - ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 9 237 26 252 252 281 56.0 1e-75 MTKEKELNHLAIIMDGNGRWAQKRHLPRVMGHKQGMQNIEKIALAANEMGVKVLTLYAFS TENWGRPTDEVSYLMKLPITFFDKFMPKLMENNVKVNIMGFLNELPDKTLAVTQKAMEDT KNNTGMILNFAFNYGSRREITTAIKKIAKQVKNESITLEDINDKLVNQELLTANLPYPDP DLILRTSGEQRISNFLLWQLAYSELAFTDKYWPDFNEEDLKKVIMDFQGRDRRFGKL >gi|260196064|gb|ACQN01000003.1| GENE 111 118186 - 118743 852 185 aa, chain - ## HITS:1 COG:L0367 KEGG:ns NR:ns ## COG: L0367 COG0233 # Protein_GI_number: 15673991 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Lactococcus lactis # 1 182 1 182 185 193 60.0 1e-49 MTNDVIAKAKENMDKSIAVYQKELGNIRAGVANASLLEGVKVDYYGVPTPLTQMSSVTIP EARVLLVTPYDKSSLDNIEHALLASDLGLTPANDGNVIRLVIPQLTGERREEIAKQVGKQ AEQAKIAIRNVRREAMDSLKKQEKNGDITEDEQKRLEKDVQKVTDDATKRVDQLADEKRK EITKG >gi|260196064|gb|ACQN01000003.1| GENE 112 118743 - 119468 949 241 aa, chain - ## HITS:1 COG:L70624 KEGG:ns NR:ns ## COG: L70624 COG0528 # Protein_GI_number: 15673992 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Lactococcus lactis # 1 237 1 237 238 325 67.0 6e-89 MSQVKYKRIILKVSGEALAGPKGVGIDPIVISHLAKEIKSIHNLGVEIGVVCGGGNMWRG ETGAKLGMERSQADYMGMLATIMNGLALQDGLEHVGVPTRVQTSIEMRQVAEPYIRRRAV RHLEKGRVVIFGGGTGNPYFSTDTTAALRAAEIDADVILMAKNGVDGVYSADPKIDPSAT KYDELTQLDVISKNLKVMDRTASSLSMDTDIPLIVFNVNTEGNIKKVIEGENIGTVIRGG K >gi|260196064|gb|ACQN01000003.1| GENE 113 119596 - 120471 579 291 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 286 1 275 283 227 46 3e-58 MAKITAAQVKELRERTGAGMMDSKKALVEAEGDMERAIDILRENGVAKAAKKSGRIAAEG LAEFAFEGNTAALVEVNSETDFVASNDKFINLVNDITKAVLAAKPKNMEEALNAPLADGT IESATTNLTAVIGEKITFRRFKLINKNDDEVFGAYKHNGGAIVALVTLKGGNEEAAKNIA MHVAAINPEYLNKDSVPADELERQKAVFTKETENEGKPANIVPRIVEGRVNKYLSEICLV DQAYVKDSDMTVEAYAKSQNATVVNFERFEVGEGIEKKQEDFAAEVREQMK >gi|260196064|gb|ACQN01000003.1| GENE 114 120505 - 121287 1328 260 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526097|ref|ZP_03956146.1| 30S ribosomal protein S2 [Lactobacillus jensenii JV-V16] # 1 260 1 260 260 516 100 1e-145 MSVVTMKQLLEAGVHFGHQTRRWDPKMKPYIFTQRNGIYIIDLQKTIKMLDDAYNYVKAV AQNDGVFLFVGTKKQAQEAIKEEATRAGQYYVNQRWLGGTLTNWTTIQSRVKRLKQLKAM SEDGTFDLLPKKEVALLTKEMDKLQRFLGGIEDMPRIPDVMFVVDPKKEKIAVHEANKLG IPVVAMVDTNTDPTPIDVIIPANDDAIRAIRLIAGAMADAVIEGKQGEDDENVEQEMADK AAESTDEKSMEEVANEADED >gi|260196064|gb|ACQN01000003.1| GENE 115 121457 - 122467 770 336 aa, chain - ## HITS:1 COG:SP1536 KEGG:ns NR:ns ## COG: SP1536 COG4123 # Protein_GI_number: 15901380 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 3 241 7 244 249 187 39.0 3e-47 MKLKNGEKIDHIYSNQIQIIQDKEAFSFSLDTILLAAGCLDYIKDRDQIVEFCAGNCAAS IYLAHRTEAHFKTIEIQDHAYDQGKRSVELNHLENRIECFLGDVNDATKFVGRQNNMVLV NPPYFKVAPGHVVNPNEKKALARHEILVDLEHIILQASQVLKNKGRLVMVHRPERLGEIC YFCQKYNLPVKKIQPYTSSSHKESNLIVITASKNGASDGLILKSPIVTQTSDGHYNPEIN QFLLAQEAELKNKYYFYVLLCNDNTLYGGFTTDLKQRLNAHNSGKGAKYTKSRRPVKMIY HECFNDKQQALKREYWFKHHSRSWKEQFLKDHNVTI >gi|260196064|gb|ACQN01000003.1| GENE 116 122531 - 123145 585 204 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 198 1 207 249 182 42.0 3e-46 MFYKIIRPIVRFIVWILNGHLHVHNKERLPEGTYILVAPHRTWWEPILFALATSPMTYMF MAKKELFKNPILSFILRHAGAFPVDRKNPGPSALTIPVKGLRKDQDSLMIFPSGTRHSAE LKSGAFVIAKMSGKPLLPVVYQGPLTFKDFLKRKPLEVVIGNPITIDRKSKIDQETTPIL YKQLEDAWAKLDHDQNPNFKYIPK >gi|260196064|gb|ACQN01000003.1| GENE 117 123175 - 124959 235 594 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 366 584 33 257 329 95 31 2e-18 MNKDYESIWSKAISFKEQKQIFKRIFKFVLLYKVEFFASLLGALLVSVINILLPRFLQYY MDHFLAHKNATWQIIYGVAAIYLLGLISKALLQFFYEYYYSLAGEKTLEKVRRVLYQKLH QLGMRYFDQNPAGSILSRITNDTMTLSTFLSMFSAVMIGIISMITAFVAMYYTDKIAGLI ILAFLPLLLLVMWLYSYYNSRLYREYRERNSLINTKLNESITGINVIQQFRQEKRIQAEF EDITNAQLKTRMKLVKMNALLLSPLTSLLYNVAIAVSLLYFGFPTRSVFVAAGVIYAFSN YIQSFFNPISSMMDSLTSFTDGIVAGKRIFKILDETELEPQQSVDSNAKIELGKIEFKHV SFSYDGKNDVLHDISFTLKPGQTLGIVGHTGSGKSSLINIMMRFYEFHSGQILLDGHDIR NFSPAELRKKMGLVLQEPFMFYGDIKSNIRLYNKEISDEAIVKAAKQVQADSFIEELPDK YDSKVIEGGSEFSSGQRQLISFARTLVTNPKILVLDEATANVDTETETLIQNGLKKLRQG RTTLAIAHRLSTIKDADKIIVLDRGKIVETGNHEELLSKKGYYYDLYRLQQERG >gi|260196064|gb|ACQN01000003.1| GENE 118 124952 - 126547 179 531 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 301 501 295 502 563 73 27 8e-12 MEFIINVLGILVAALLLYVFRFGWRSQLWGGAQILARDLTTKLYWHFLKMDRTFYQRHRT GDLMAHATNDISAIQYVAGDGILALVDAVFTGGTTLIAMMIFVDWRLTLIAMIPMPLLAL MARFLGTKLHEAYRNSQEAFSQLNNKTQESITGIKVLKTFGQAQEDIAAFNKMTHDTIRI NKRVFKIDSLYDPLTTLIIGFTYVITIIAGGQMVQSNEINIGQLVSFVAYIGSLEWPMFA IGYLFNLIERGSASYKRVMSLLSEKSLIKDQADHQVATITGDLEVNIDQFKYPDEKNRLA LQNINFNLQPGQTLGLVGKVGAGKSTIIELLMRDFDNYQGQIKLAGKNIKDIALDSYLSQ ISYVPQKNFLFSVSIADNIRFAEPEATLKQVRKAAQEAALDSDIMLFPNKYDTLVGENGV SLSGGQKQRLAIARALIKDSQILILDDALSAVDAKTEKNILNNLQKCRKDKTTIIAAHRL SSVMNADLILVLKNGQVIERGTHQQLLAEDGWYKEMWDRQELEKKVGEGIE >gi|260196064|gb|ACQN01000003.1| GENE 119 126793 - 127014 381 73 aa, chain - ## HITS:1 COG:SA1178 KEGG:ns NR:ns ## COG: SA1178 COG3763 # Protein_GI_number: 15926924 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 67 1 67 80 62 61.0 2e-10 MNLGLAIILIIAALLIGLVGGFYGARAYMKKYFQENPPINQDMIVAMMSQMGQKPSAKKV NQVMNMMKHQQKN >gi|260196064|gb|ACQN01000003.1| GENE 120 127032 - 127280 370 82 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01293 NR:ns ## KEGG: LCRIS_01293 # Name: not_defined # Def: hypothetical UPF0291 protein # Organism: L.crispatus # Pathway: not_defined # 1 82 7 88 88 74 75.0 9e-13 MDKKEEERVRNRINELYHKKQTEGLTPEEQAEREELHKKFIANFRAGFKQQIENLVLIDK NGKEITSEKAKRAQRRKGLRKD >gi|260196064|gb|ACQN01000003.1| GENE 121 127419 - 128054 881 211 aa, chain + ## HITS:1 COG:BH2356 KEGG:ns NR:ns ## COG: BH2356 COG1974 # Protein_GI_number: 15614919 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Bacillus halodurans # 4 209 3 204 207 145 43.0 8e-35 MTLKEDSNQFKILEFIYNTVEDRGFPPTVREICEAVDLSSTSTVHGHLNRLVKTGYLFKD PSKPRALEITQEGLNALGVDPGIPYLGTVAAGDPDTALADDSGAEYYVQRPERFDKRDPL YMLKVDGMSMIERGIYPDDLVIVRHQNVAAQGDLVVAYTENNGTTLKELVRDRSSKQLRL KAYNKEMYPDELLPDTNFKICGKVVALNRDY >gi|260196064|gb|ACQN01000003.1| GENE 122 128463 - 129464 962 333 aa, chain - ## HITS:1 COG:BH2219 KEGG:ns NR:ns ## COG: BH2219 COG1609 # Protein_GI_number: 15614782 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 3 306 4 306 335 164 33.0 2e-40 MTSMQEIADKAGVSRATVSRVLSNHPSVKADTRKKVMYWVKKMNYEPNMIAQSLAGNSTN LIGVIVPEIAYPFFSEIIEAIERQAFYEGYSIVISNTNRKIEKEKNIIAEYKKRKVDGII AVPVSERESVSVYKKISIPVTVITKKINNFNSIYISHYKGGEQIAKHFINSGFKKIGYIG PISNSTSARKFAGFKDYLKNQGVQLTDIIECNPPKNMNATLVAESVKEYISNKEIGSEVF FANDDISACEAINAFKMQGYDIPNDIKIAGFDNTLLAREMNPRLTSLAQPLEAIGKKAVQ VLINQINYHTKPHMYEMESYVVERESTLNLNIK >gi|260196064|gb|ACQN01000003.1| GENE 123 129677 - 131857 1167 726 aa, chain - ## HITS:1 COG:BH2223 KEGG:ns NR:ns ## COG: BH2223 COG3345 # Protein_GI_number: 15614786 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Bacillus halodurans # 2 707 3 712 748 620 44.0 1e-177 MIYVIEKNDEKYYFLNTNNTSIVLLKNKYDYLFILHWGSLISPTNLDYVLKELNRASYLA DANGVKDFKLEQMPQIYPSYGYSDLREPAFSIRYQDGSRITDLRYDSYKIYKTKKKLKGL PTIISKESESIDLILIDKIKKIKITLTFSVFDAYDAITQSVKIENLSNETCYIEKVCSAS IDLLFSDLDMFQLNGAWGRECHINKRHLVQGSQSISSARGASGHGQNPFIALATRGTNEE YGEIFALNFVYSGNFLGQVEVDMHKNTRVQLGINPFDFEWILDPSQSFQTPEVVMVYSNE GLGKMSRIFHKLYRNTLASRKYLNSTPPILLNSWEANYFDFTKESLLNLAEKSSEIGVEL FVIDDGWFAKRNDTTSSIGDWVPNQVKLGGNLDTLINKIKKNKIKFGLWFEPEMVSPNSN LYRLHPEWVIQVKNRRIEESRDEYVLDLSNPAVCEYITEILSNFLSVYSIDYVKWDMNRN FTNLGSTYLSSERQKEQAHRYILGLYSILENLTKRFPNVIIEGCAGGGGRCDPGMLYYMQ QIWISDDTDAIERLPIQYGTSLIYPSVSLGCHISAVPNHQTNRITNLDTRSTVAMWGNLG LELDLNNLRKDELEILKNKILFYKKIRSIVQLGDLYRLQGLDETNEYAWMYISEKQDEIL VSYVQIMAQPNTVAKRLRIPYLDVNFNYLDVENNRVYKGDELYALGVSKGSCKYDGYSKQ WLFRRI >gi|260196064|gb|ACQN01000003.1| GENE 124 131871 - 133283 1522 470 aa, chain - ## HITS:1 COG:SPy1815_2 KEGG:ns NR:ns ## COG: SPy1815_2 COG1263 # Protein_GI_number: 15675645 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 101 459 10 362 385 284 47.0 2e-76 MAYDYKKIAKSVIKAVGGYENIKSAQHCATRLRLIVDDREKINEEEVGKIEGVKGTFFTG GQYQIIFGTGHVNRVFSEVIKLGVGETTVAEAKKAKLTGKNKFQKAIRTFGDVFVPIIPV LVATGLFLGLKGALFNNNFLSLFGMTIKEVPKILLVLIDVLSATTFAFLPAIVCWSTFRV FGGSPILGLILGLMLVNPALPNAYSVADPSSGITPLYLFGIIPVVGYQGSILPAFVAGWI GSKLEIKLRKLVPATFDFMITPFLVLLIMLLVSLLIIGPILHGVELILLSFMKTALHLPF GIGGLIIGFFWSIITLTGVHHISNMLEISLLANTGFNPMNAILCMCGFSSAGVCLAIALK AKKKEVRAIGPSATVSALLGIGEPALFGVLLRYKVTPFILSCCINGIAGMLAMIIGLQGT GNGITTIPGILLYVYSPKQLILYIVLAAATFITAFITTWLFAVPKEVMSE >gi|260196064|gb|ACQN01000003.1| GENE 125 133569 - 135515 2462 648 aa, chain - ## HITS:1 COG:SA2167_2 KEGG:ns NR:ns ## COG: SA2167_2 COG1263 # Protein_GI_number: 15927957 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 99 470 1 385 385 323 45.0 6e-88 MAMDYKKVASEVVAAVGKDNLVAAAHCATRLRLVLKDFDAVDQAALDNNADVKGTFKTNG QYQIIIGPGDVNFVYDELVKLTGVQEASTEELKKIADKGKPFNPVMAFIKLLSDIFVPII PALVAGGLLMALNNFLTQPGLFGPKSIVQMNAAVKGFSDIIQLMSAAPFIFLPILVAISA SKRFGANQFLGAAIGMIMTSPDLGATAKYWDILGYHVMQTNYKYQVVPVLVAIWVLSILE KRFHKILPQAVDFTFTPLLSVMITGFLTFTVIGPVFKEVSDLLTQGIVWLYDTTSFIGMG VFGLTYSAIVTTGLHQSFPAIETQLVTEFAKNHVGSGDFIFVVASMANVAQGAATLAIYF LTKNKKMKGLASSASVSAFLGITEPALFGVNLKYKFPFFCALIGSGVAAMVAGLTKVIAA SMGAAGFIGFLSIYPSSIPFYVMCEILSFAVAFALTFMYGKKNLKEETVDMAPVAATEAT EKQTAVEQKVEKQLSLSDEVIASSVNGKEVSLTSVHDQVFSAKLMGDGAAVIPADGNIYS PVDGEVTVAYETKHAYGLKSDDGAEILIHIGIDTVNLKGEHFESFVKQGQRIKKGDKLGT VDLAAVKEAGYDTTVMVIVTNTNDYASVDRVQNDKVKAGDNLIAVTAH >gi|260196064|gb|ACQN01000003.1| GENE 126 135755 - 137206 1833 483 aa, chain + ## HITS:1 COG:SP1724 KEGG:ns NR:ns ## COG: SP1724 COG1621 # Protein_GI_number: 15901557 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 1 480 1 477 484 471 46.0 1e-132 MEWSTEKRYLPYEKWSAKTLLELQSQASNSPYQLHYHIRPKSGLLNDPNGFSYFNNEWHV FYQSYPFGPVHGLKSWEHCVSKDLVHWKDLGTAIYPDTELDSHGAYSGSAKVIDDKLFLM YTGNARDTEWVRHPHQMGAFMDKNNHIEKLPNSLIEQPQHTTDHFRDPQILEHNGKYYCI LGAQDKATKTGKIALFEAKDIKGPWHDLGYIDFTNEEMGYMIECPNLVFIDEKPVLIFCP QGLDKAIVKYENIYPNMVLVGDKFDFTSAQFDSKHSIQNLDDGFDVYATQPFNAPDGKVY ALSWVGLPDLTYPTDIENWSGCYSQVKELSLKDGQLIQKPVSTIKNLRQEEVNFTGELDT KNQYELKLEVAASQKTTLHIAANETNTESLKLHIDTANGELILDRQNSGFTVNEKYGTER AIKLPQNTTLDLDIFVDHSLIEVFVNNGEHVLTARFFPKKGSNKLLLDENIKFKGQYWEM ADI >gi|260196064|gb|ACQN01000003.1| GENE 127 137206 - 138186 753 326 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 326 1 321 321 295 48.0 8e-80 MSVKLTDVAKLANVSPTTVSRVINNYGYISEKTRKKVFSAMNELNYQPNSLARSLQGKKT RLIGAIVPSLTNPFFAELVSRIEELLNRKDYKLILCNAVQDSSHKERDYLNMLKANQVDG IISGTHNLDITEYQETGLPIVSFDRNLGPDVPVVSSDNYQGGWVATNSLINSGCKKVAFF GNIKGSNNPTDLRLKGYHDAIIEHGLQEILVPMNFYESANLKKMAFQKLLSKHEIDGAFF TDDFSANLFWQYSRFNHFKDCERIKVIGYDGTSIMRQLNPDLSTIAQPIEEIANLLVDLL IKRINHEELSDSNYVLPITLVKGNSI >gi|260196064|gb|ACQN01000003.1| GENE 128 138217 - 138864 746 215 aa, chain - ## HITS:1 COG:SPy0506 KEGG:ns NR:ns ## COG: SPy0506 COG2039 # Protein_GI_number: 15674611 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 215 215 241 55.0 8e-64 MKILVTGFDSFGEDRINPALEAVKRLPDNIAGAKIIKLEIPTKFNISAEVVKEAIENYKP DYVLNVGQAGGRFAITPERVAINLDDGRIADNAGYQPLNQTIQSDGATAYFTQLPIKAMT KAIREVGLPATVSNSAGTFVCNHIFYQVQYQRAKFFPDIKAGFIHIPYLPEQVISKPQMP SLSLADDIKGLIAAISAIVERDGQGDINTIEGSIH >gi|260196064|gb|ACQN01000003.1| GENE 129 139303 - 139635 388 110 aa, chain - ## HITS:1 COG:SA0887 KEGG:ns NR:ns ## COG: SA0887 COG5294 # Protein_GI_number: 15926621 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 5 106 2 101 106 79 46.0 2e-15 MSTFKKVMLTVTGVIVVAIFAFFFVHTPQTDRFNPFIQKTTSYAKVKKGTQNYYQVQAIN PKTGENLSYKLSEVGGYDNSKEYIEITHKGQYVEKISYISKEKFEKAKQK >gi|260196064|gb|ACQN01000003.1| GENE 130 139632 - 140300 270 222 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 212 1 217 245 108 34 2e-22 MIKLKNISKSFGNHSIFVNVSADLHAGKSYAIIGKSGSGKTTLLNIIGGLESASSGQVEI DGQVVKEANLAKFRKDYFGFIFQNYGLIDTDTVEQNLLIGLANQKISKKVAQEKLKSVLK LLDLDYLNLSQKVFVLSGGEQQRLALARIILKKPKIIFADEPTGSLDPDNAQIILKHLLN DFGSDATILVATHDPQVWKKCDYIIQVQEKKIKLIKNEGEGQ >gi|260196064|gb|ACQN01000003.1| GENE 131 140315 - 142294 1195 659 aa, chain - ## HITS:1 COG:SA0886 KEGG:ns NR:ns ## COG: SA0886 COG4652 # Protein_GI_number: 15926620 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 12 626 7 623 654 117 22.0 7e-26 MFKTIKLSLFTIISIVAFFLLSTVIRQYDLETIPGEQNVIKVYGDKQKANKAQVFFELKK VARKGHYQLTLIRQNTINNSVTKSIYVFNSDLPYNASLYRNSAVKQFSSKEVELLDLKGE YYTNASSSEFVKLQSKLTDYGLKFEVGKDDFWKVAFFNENILNYLLIFISVFAIFFTVSV MEKVANLKKYAILRLNGWNFFKILVRDLLDISRPFAIILSALIIIFGVVTSWEMNLTGII FFAKYGLILELVLLIFALLLELLSYFPLLLAKLGAAIKGQTYSAALTAVSYLLKIVLLIV VFFNLFILYSSVKNLHDDQNIMNMWISRGSGYTIQYGYVDPQDRAEEDKLGNLTKKLVAK NSDVIISRTNQEYHPASNNFDVTNGNVLIINKNFLKYNKLEDLTGKDLYKLRYQAKTLYV FVPITHKSKLSEIKKNVVDYTSFQQELSGRKGQKLNFEYILIKNPGQVFNYLIGKEISDS ISTNPVFIVDSGLLSNDFYFSSATKGMIQFKNLQKLKTQLSQLGLQSYIVGITDAKTRLS NFNITISRKLTILSLTIVLSIGQLFFLMIFIASSFLQKERPRMAIRKVFGISNYDLVLKF TSFNLLIDIGVAILVAIFCGINWILIFGLIAYLILETSAIIVLAMRAERGLLTTINHGN >gi|260196064|gb|ACQN01000003.1| GENE 132 142448 - 142795 578 115 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526078|ref|ZP_03956127.1| 50S ribosomal protein L19 [Lactobacillus jensenii JV-V16] # 1 115 1 115 115 227 100 4e-58 MDPLIQELTKEQLRDDIPAFRAGDTVRVHVRVVEGTHERIQLFEGVVIKKKGVGISATYT VRKISSGIGVERTFPVNDPRVAKVEVVRHGRVRRAKLYYLRNLHGKAARIREVRR >gi|260196064|gb|ACQN01000003.1| GENE 133 142902 - 143633 1002 243 aa, chain - ## HITS:1 COG:SP0779 KEGG:ns NR:ns ## COG: SP0779 COG0336 # Protein_GI_number: 15900673 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 242 1 238 239 259 55.0 4e-69 MKINVLTLFPDMFTPLQVSMLGRALEDKKWDLNLVNFRDFTTDVHHHVDDTPYGGGAGMV LQIMPIKKALDSLEKKGKVIITAPQGKTFNQKMAKRWADEEQDLTFICGHYEGFDQRVYE MADEVVSIGDYVLTGGELPTMSMIDATVRLLPGVLGNSASAVEESFSHGLLEYPQYTRPA EFEGMKVPEVLMSGNHGKIAEWRLKEALRNTLLRRPDLLETREFTPEESKLLTEIKLDLE NKN >gi|260196064|gb|ACQN01000003.1| GENE 134 143623 - 144135 623 170 aa, chain - ## HITS:1 COG:SPy0847 KEGG:ns NR:ns ## COG: SPy0847 COG0806 # Protein_GI_number: 15674881 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Streptococcus pyogenes M1 GAS # 1 170 1 172 172 132 41.0 3e-31 MQFYDVAQVLTSHGLKGEVKVKVITDFPEQRFCEGVKLFIKDDMRQLTVESGRPFKQFWL VTFKEIKDINEAESLFGKTLVISEEDQEQLPEGHYYYHQIIGLSVVDNETDELIGKVTDI EAPGANDIWQVTPKVGKPFWLPYVPSFVKSVNLDKEEVRVELMEGLRDED >gi|260196064|gb|ACQN01000003.1| GENE 135 144206 - 144478 463 90 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526075|ref|ZP_03956124.1| ribosomal protein S16 [Lactobacillus jensenii JV-V16] # 1 90 1 90 90 182 100 9e-45 MAVKIRMRRMGSKRKPFYRIVVADSRAPRDGRFIEEVGYYNPVSQPKELKLDEEKVFAWL QKGAQPSDTVRSLLSGAGLMQKLHDAKYNK >gi|260196064|gb|ACQN01000003.1| GENE 136 144568 - 145995 1989 475 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 456 1 457 523 520 62.0 1e-147 MAFENLSERIQKALKNLTGKGKVSEADINAASREIRLALLEADVNFKVVKDFIKKIKERA LGQEVQGSLTPGQQIIKIVNDELTKMMGEEAAKLNKAPHIPTIIMMVGLQGTGKTTTVGK LAKYLMDTEKARPLLIAGDIYRPAAIDQLKQIGDQLSVPVFSEDEKDVAKIVADGLAQAK EAKNDYVLIDTAGRLEIDEALMEELERVKEVAKPDNIVLVVDAMTGQVGAQVAETFDKRL DVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSELEGFYPDRMASRILGMGDV LTLIEKAQRDYDAKEAEKVAQKMRENTFDFNDFIDQLEQVQKMGPLDQIMKMIPGMANNP QLKNFSIDEKQIAHTKAIVYSMTEAERQDPDLLNPSRRRRIAAGSGRPIMEVNRMIKQFK QSKDMMQKITSGNTKALAGLPGMDSPMAQAAMRRMGKQFKKGKKKRLKHIKRFKS >gi|260196064|gb|ACQN01000003.1| GENE 137 146000 - 146335 360 111 aa, chain - ## HITS:1 COG:SPy1201 KEGG:ns NR:ns ## COG: SPy1201 COG2739 # Protein_GI_number: 15675166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 77 4 80 113 79 58.0 2e-15 MELIKNENLADLYSFYGQLLTKGQQAYFEDYYYDDLSLGEIADNHGVSRQAVYDNLRRSS KSLENYEKKLHLKSDYVKMENLASKALKELNSNPEACHDNLTKLIKLIRGE >gi|260196064|gb|ACQN01000003.1| GENE 138 146407 - 146640 245 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282933263|ref|ZP_06338650.1| ## NR: gi|282933263|ref|ZP_06338650.1| hypothetical protein HMPREF0886_2732 [Lactobacillus jensenii 208-1] # 1 77 1 77 77 98 100.0 1e-19 MTLNQYQVGHLLNMILLTFLMLNTVHSNILFAGIFLILSVVPSYFLLGQIAKTKPYFVFL QSLWDFILFSVFCFFIK >gi|260196064|gb|ACQN01000003.1| GENE 139 146763 - 148340 1196 525 aa, chain - ## HITS:1 COG:SP0137 KEGG:ns NR:ns ## COG: SP0137 COG1132 # Protein_GI_number: 15900076 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 7 524 5 535 538 137 24.0 8e-32 MNFKDFIKTNPLNFGISILLIILSSFATILATYLIAITTTAIQKNDFNLWLNMLLLSLVV DVVIVFLGPISTYLLERQFQQYSHQVRLKLISHFYKEKKFELARWENRLTNDISMLRQEK FLLLPELISCICLIVFAALALWYANWLLFLVTILVTIISLFLPKFIQKAMQKSFQKISAA NQKYLFQIENWLDGIAEIRHFLAGAKLFKILASSSTSLERANLKQTGNIQILILLNKLMA TIFTTVLYLVAGYLFISGKAEFGLIIAVGNYEYYLTNSITRLTTSWGQIKGTDKLSREIL SDCHELEEEVKNIPNYAVDIATSPLTFQFENGESLSYPELNIKAGEKVLLTGDTGAGKST WMKLILGQLKPTTGKISFLKNGQLINYDPQQIRYIPQKPSLLPGTILDNITMYDKELKST ALSVVKKVGLDSDLAKFSLGINEPVDLEKLNVSGGQRQKIILARALVHKAKIIFIDEGTS AIDETGTKKILKYLSQLDVTVVFIAHNFNLELEQYFDRVIHLSKY >gi|260196064|gb|ACQN01000003.1| GENE 140 148346 - 149923 191 525 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 319 525 5 217 223 78 27 3e-13 MNLKGLLKINYLQSFLLVFLLIFTSILTTSSTYVFKFLINSLSERDFKDFLAYLLVTVLL AVITGIGKGWTNYSFEKIKQAYLHQIRARLVKSYYYQNCHDISKMQNELSNNLKTLSDNF AQANYEIAVNSISFFLSLGVLLTLHWGLILITFFCFSLIMLAPKLLENYLARASKKVADK NQLLLKNAHNWLGGIEEIRRYHKKHKLTNELGQVAGKFEKAQLNEQKAMQFADFFNSGLN IGAQTLLAASAAILFFAHQLDLGSTMVASYFAFNIFASLGTLINQYMKLKSSRDLNQEIL LSQKFKPILDNENEAVGGVKGQNLLFKYQNGEEIRYPDFEIKPGDKVLVTGESGVGKSTL FKLIIGELKPVAGQINFFKQNGQEIKNRNLDMLYLAQDAKLFPVSILDNITMFKNLAIDK VQKACKLVDFDRDLAVLPQGLSTIVNLANENLSGGQMQKIVLALASLHDTKFLLLDEATS AIDSKTSFDIFKNLLQREITIVVIAHNLPAETKKLFTHQIHLEKG >gi|260196064|gb|ACQN01000003.1| GENE 141 149937 - 150755 460 272 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00042 NR:ns ## KEGG: LCRIS_00042 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 1 272 1 269 270 170 38.0 5e-41 MTVGEALKQERKNLNLTQSAMAAEVISPSFYSKVENNLHEINVNDLLAILDAHCIDIPSF FMKIDSKVKTDYFNLNTFTDRVLDIWYNKDLKQLAELQTELTKYTGNDVSFLNLQVELLT FFIKNERNAKLSDSLMQKLRAELFKQNSWSLSSLKIFRLTMRIYDLDQLTFFMASIMNKF SDFKGVNLEIVEVIAAISVNYLDNCYENNEFNQSRNVQNYLEKMPANLTLFAYKLLGRYY QALFDKNTTELTNIRQVFIDCGYQTFIQLLPK >gi|260196064|gb|ACQN01000003.1| GENE 142 150769 - 153336 1550 855 aa, chain - ## HITS:1 COG:SP1612 KEGG:ns NR:ns ## COG: SP1612 COG0515 # Protein_GI_number: 15901452 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Streptococcus pneumoniae TIGR4 # 35 337 19 329 330 149 33.0 2e-35 MNKYLPFVYANQKEDEFSKFLKKGTSKKYSINVSDFWIYFNVKSQKLPDSGWKGHLAARP EDKYKVFQIAKAVFEANDCSFKVAKNIECFKILNDPHIPVAEANKFITFYPQNINVFKIV IKQLFTKLKNFKAPQIFTDYQLPNNSCVQFRYGAFKKIARWDLKAQKELLYMTLPSGEII EDSRVGYFDLPEGVEWPFGSTEKWLLVPEKNISKQSKLNSYSFIEIMAQKNKGDVYLGVE NVTGKQVIIKSANPYVKNDCAAYSAKELLRNENQMLRNLSNLNVIPKVKSYFNENNIEFQ VTEFIDGKSLDSFFGKEKLLSVILSICNTIRLIHEAGYIIGDVTNSNFIYKDGITYLVDL EYVRKNANKKYKRTFKTPYYVPNYSTKTFLTQKEDLFSLGIIIITLTLGKTPKYNSENLN DAVRILINQNKLASKLNPQFSAFLDIANYILSLSIDPNPYVSENLNQNKIKDIYKYGFYV DSIKDFDTSLLMNSLEELPKQLKKSDYKIGEKWWKSKNFGQYVSELSIQHGISGVDTALK VSAEKLPIKQKVLDISNNFEYGDSYLFGSTGLIWNLIALFKEKEIDSSTLRNEAKKIILS WPEKKEVNDFVLGVSGKAYTLLYLNLLLKDASFSKELKKLGEKIFESFYDIDFETTNFSR INFAHGSVGKAYVLYLLGCYFKNRDFKSKAQLELKKADKIVDRSININKSFFSDSLKYSW CEGLAGIAFGFNRIELLSHGKIKFSSLSKIISFLSKGFCTIEACFCHGRQGILNTIFEYN QYHEKHFSKLDDLLQYDLLNFFNPSSGEWNILDETGYENAMDYGVGQLGVIVIDRMVFRK GENPFFIPIESEMTL >gi|260196064|gb|ACQN01000003.1| GENE 143 153806 - 155230 1668 474 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 6 471 10 473 474 353 39.0 5e-97 MKELSACTTILVGKKASIDGSTMIARNDDTFLPITPQKFVVKPAVKGEKGRHIKSWLNKF EMDLPDWAYRTQAVPNVDYKKLGYYEESGINEKNVVMSCTESTYGNERTLAFDPLVVDGL DEDCMQNVVAPYIDSARDGVKLLGDLIKKYGSAAGNSVLFGDKDEVWYMEIVTGHHWVAQ RIPDDCYAVAANRVSIEQVDFNDPDNFMWSEGIQEFVEKHHLNVDREGFNFRHIFGTYNE KDRHYNTSRVWYAQRYFNPSIEQDPEDGDLPFIRKAEKLINPDDITFVLGSHYQETPFDP YGKGTDEEKHRYRPIGLNRTQNAHILQIRNDLPEDKAAIYWLCIGGPTFTPFIPFFANMN DTEESFKNTSLTFNQKDAWWFYKAVAATVESHYPQFVQFDTDYLIEMRRYFRARIEEVVA KAGDLKGEELTEFLTKENQETVRYTREQTEKLWGKMLTESINMSKLTFNMDKNL >gi|260196064|gb|ACQN01000003.1| GENE 144 155241 - 156545 562 434 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 [Rickettsia canadensis str. McKiel] # 135 429 12 300 303 221 42 3e-56 MGLFDKIKKTLFGNNEEKAKQAPSKPEEEKAEVAEETNEVKPEENKSAEIETNAEAAEDK NESSASDEVKNEPEVSFTKEEQTDSEEVVDSKPEKDIVASQEVEDSSSEEEKGEETEPEA ESSESKTQELYDSGLKKTNQGFGARLNAFFAQFRSVDEDFFDELEDLLIESDVGFETSEE LVEQLKDEAKLQNAKSHDELKKLIVQKLVDIYDQNGDSEAEKLTYNDGKTNVYLFVGVNG AGKTTTIGKLAQRFKNQGKKVVLVAADTFRAGAVEQLKEWGRRTETEVVTGPVQADPASV VYDGVKHGLEEKADYVLVDTAGRLQNKQNLMKELEKIERTIKKLLPEEPSETLLVLDGST GQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVILAIRNEMKLPVKLVGLGEKAEDLADF DAASYAVGLFHGIV >gi|260196064|gb|ACQN01000003.1| GENE 145 156545 - 160114 3313 1189 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1184 1 1183 1186 664 38.0 0 MPLTELTLTGFKSFAEKTKIKFGDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGSN MKDVIFAGSQYRTPMNHAEVELVFENKNRALNFDADRVTVARRILRSGDSEYLINNQTVR LKDVHALFMDSGISQDSLAIISQGKVDEILNSRPENRRAIFEEAAGVLRFKEQKQAATNQ LAKTTDNLIRINDLVNELEGRVEPLHKQSSLAKEYKFQKAGLDKDLKTLLAFELQDLELK RTELAKKTEKSKILLNKLDEEVSQSQNDLAQKKNQLAKTTKEKEALQERLLNLTQETSNL NTDLQVAEQSDQYNDATKHEYENQLNELKKNLSSLTEKEASLQKEVDQVATQEAALAKKR DGYAQSLHSDPETLSKELENLRNDYIQSLQDQTSNNNDLVYAENELKRLNNAAMPELKTA EAELEKAEAELTQLKQQGQEASAKKNNLQNQVQLKSDLINDLTAKQNLANRSLQDISQKY QAAKAQKEALENIQKRHEGYYYGVRNILNHLDQYQGVIGAVGELLDFPAELEAALTTALG GGVQDLVTDTKQSARNAIMQLKQNRMGRATFLPLDGLRFSTIPSSTVTTLKSMPGFIGVA SELVKTKGQVDISVAVNYLLGNVIVADTIDNAMKINSRIYRYRIVTLDGDVISPGGSMSG GAKNQRNNSPLQTAGEINKLTKAVNELVAGVKAAKEKIITLDKKISKEKKIFASLNDELQ VAIQDLSALALSYQNKESEVKRLKEAHHLYQNRADERAAEIKRLEEKIKEKKQIQTQIND RLEKQKQAMAEKKDQIDDFANLNKDVQAKLAELNPKLAVLHNQKNNLKAKLHDLASQKET STSQVKLLETKLADLTSNKELTAEQKAQKVQKITELTKEKQELEVKLKEISSHLGQLDAQ ISQLDASFTRNYDLRKDAATEQESYSVSLAQVKTKMKQHLDKLRDEYALTYEMALNQAEI ENNSENQARLAKSVKLHQMSLDDIGPVNLSSIEEYEEVKSRYDFLTGQQADLLKAKEDIE KSMANLDEEVKKRFSHAFKEIAKSFSQIFPVVFGGGNAKLVLTDSDNLLETGIEIIAQPP GKKLQKLSLLSGGERALTAITLLFAILQVNPVPFCILDEVEAALDDANVTRFAKFLHHYD MHTQFIVITHRRGTMEKADQLYGVVMQESGVSQVLSVSLKEIKDNDEVS >gi|260196064|gb|ACQN01000003.1| GENE 146 160124 - 160816 650 230 aa, chain - ## HITS:1 COG:SPy0531 KEGG:ns NR:ns ## COG: SPy0531 COG0571 # Protein_GI_number: 15674631 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Streptococcus pyogenes M1 GAS # 5 229 3 229 230 199 49.0 3e-51 MVSTKFKNYLFEEYGIKFKNETLLEEAFTHSSYVNEHPKESAGNYEKLEFLGDAVLELAV SDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGRGEEKTGARERKTLL EDVFEAFNGALFLDQGMDAVQKFLKLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKIE YQVLEETKLPSNFKVALFVEGKKISEGSGHNKKAAEQVAAKLALIKYQEK >gi|260196064|gb|ACQN01000003.1| GENE 147 160901 - 162661 2135 586 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 566 1 579 600 355 38.0 2e-97 MKKLKVFTGLGLLTAVALTTTACGGNNNGSNATKQAISFKQAVPTKTAKKGGKVNVAIET DTPFTGIFSNELSTSAIDSEVMQYGSESLFSTDDEYRYTNDGAASIKIDQNAKTATIKLR DNVKWSDGQPVVAKDIEFAYEILANKETQSQNYTSSLEDIVGMKDYHEGKASTISGIEMP DGKTVVIHFNEMKPGMTQSGNGYIWENAEPYHYLKDVSFKKLTSSDKIRKNPLFFGPYKL SKIVRGQSVTWVPNKYYWRGTPKLSQITATVVSPNSVSQSIKSNKFDVTQVINSQWQNIN STKNVNFIAKVPLQYTYLGFKVGKYNSTLGKNVMDTDSKMNNKALRQAIAYGMNVNQVYK RYSSGLTFRIPTLIPKQFGDYFDKDAKGYSFNLKKGEELLDKAGYKKRGTYRVQPNGKPL TIHLAAMSGSSIQDAVIQNYIQQWKKMGLHVVLTGGRLIEFNSFYDKLKNDAPNVDMFIG AWSLSSEPSPNDLYSETAQFNYSRFVTKKNNELLSEIDSQKAFNHKYRVKKFHEWQQYMN NQAYVVPLTNSYSIMAINDKLTGYSLQPSKSNGNGFPNWYYVAYKK >gi|260196064|gb|ACQN01000003.1| GENE 148 162849 - 164621 1982 590 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 570 1 579 600 390 41.0 1e-108 MSKVKVLSSIGLLTGVALTLTACGSNSNSSSNSASSVSKFKDTVPTKTAKSGGTVNYAIE TDSPFTGIFSNELSTTSTDSEVMQFGNESLLATDDSYKFTNKGAATFKLDKNAKTITIEV KKGVKWSDGKQVTAKDIEYAYEIIANKDTNSQRYTSSLADIVGLEEYHEGKSSTISGIEM PDGENGRKVVLHFKEMKPGMTQSGNGYFWETAVPYHYLKDVAFKDLESSDKVRKNPLFFG PYKLQSIVRGQSTTWVPNKYYWRGTPKLKKIVATVVGTNSVTQSIKSKKFDVAQVINSQW NNVKNTKGVNFIAQVPLSYSYLGFKVGKYDTKTGKNVMDKNSKMNNKALRQAIAYAMNVN EAYKRYFNGLAFRVPTLIPEQFGKYFSKNADAYSYNLKKAEQILDKAGYKKKGKYRVQPN GKKLVIYLAARSGSSVSDSITQNYIQQWRKIGLDVKLSSGRLMESNSFYDKIQNDSPNID MFMAGWSLSSEPSPADLYSEQAPFNFARFVTKKNTQLLNEIDSQKAFNNSYRVKKFHEWQ KYMNDEAYVVPVSNGYEISAINNKLTGYSLKPSLGNGNGQPNWYYVAYAK >gi|260196064|gb|ACQN01000003.1| GENE 149 164961 - 165875 992 304 aa, chain - ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 20 302 19 300 302 278 52.0 6e-75 MAKDKSTKKEKTAAKVSLPPSGFKVVWREIKKDKVAMGALIIIIAILLFTFVGSLFLSKS QVTEVNIADAYYSWGEAGHIFGTDDGGRDILQLLMMGGRNSIMIGLSVTLIVEVVGLVIG LISGYFGGTIDNIIMRIVDFIQILPQMPILIVFAATIPNYNAVTLVLMISLFGWTSSTRY YRSFVLSQRDREYVLASKTSGSSNLRIMFREVLPNISSMIIIDVILTVAGNIGIETGLSF IGYGLPTTTPSLGTLIGYANDPVNVTTRPWLWVPATILLLIISLSINYVGRALQRAGDAR QREN >gi|260196064|gb|ACQN01000003.1| GENE 150 165890 - 166849 1286 319 aa, chain - ## HITS:1 COG:L91252 KEGG:ns NR:ns ## COG: L91252 COG0601 # Protein_GI_number: 15673821 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Lactococcus lactis # 1 319 1 319 319 359 59.0 4e-99 MWKTILRRFLIMIPQIFLLSVLVFFLAKMMPGDPFTGAINPNTDPKEIARLKQELGLNDA PWVQYTRWVGNLFHGDLGTSYIQHVPVASLIWDRAINTFWLSLFTVILTYLIAIPLGISA GRNQDKWQDQSIQIFNYFTFAIPGFVFYILGLYLFGFVLNWFPISGSVGSDASGTFGVFL SRIYHLILPGTLVALISTTGIVQYLRTGIVDNKVEDYVRTARSKGVPEKVVFNKHILRNS LLPIAAFFGNTITGLLSGSILLETVFSYPGMGKLFLDSISQRDYTTLTALILLYGILTLV GNLLSDIIMSIVDPRIRIQ >gi|260196064|gb|ACQN01000003.1| GENE 151 166851 - 167822 738 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 270 6 275 329 288 50 1e-76 DMGKEIIQIKDLKVHYPIRSGFWNRITDYVRAVDGVNFSINEGETYGLIGESGSGKSTTG KSIVGVEKVTSGEILYKGVDVTKPANRKKLNYNKDVQMIFQDSMSSLNPRKRIEDIIAEP IRNFENLTTDEERKRVQELLDIVGMPSDAIYKYPHEFSGGQRQRIGVARAVATNPKLIVA DEPTSALDLSVQAQVLNFMKNIQQQYNIAYLFISHDLGVVKHMSENLAIMHRGRLVELGS REEIYKNPMHIYTRRLLSAIPRVDVEHRAENKKHRQAVEKEFQEDQARWYDKDGKVFPLR EVSRNHFVALPEEEIHKIEKEGE >gi|260196064|gb|ACQN01000003.1| GENE 152 167823 - 168800 1073 325 aa, chain - ## HITS:1 COG:BH3640 KEGG:ns NR:ns ## COG: BH3640 COG0444 # Protein_GI_number: 15616202 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Bacillus halodurans # 1 322 12 333 340 414 60.0 1e-115 MHTAYRLQGKFYDAADDVSFTLKRNEILAVVGESGCGKSTIASSIIGLYDHKNTKVTGDI LYNELNLVGLNESLFNKIRGNNIGMIFQDPLASLNPLMRVGDQVAETLYYHTDMDESARK KRVIELFNQVGMPRPEEMYRMYPHELSGGLRQRVVIAMAIACKPEVIIADEPTTALDVTI QAQILDLLEDIQKESQSGIILITHDLGVVAETADEVAVMYAGQIVEKADVKTIFENPKHP YTRSLLHSMPQSDDQDEDLHVIQGTVPSLKNMPRTGDRFASRIPWIPASEHEENPVLHEV EPGHWVRCTCWKNFHFQDDQEASGE >gi|260196064|gb|ACQN01000003.1| GENE 153 168954 - 169193 408 79 aa, chain - ## HITS:1 COG:lin1920 KEGG:ns NR:ns ## COG: lin1920 COG0236 # Protein_GI_number: 16800986 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 78 3 76 77 57 47.0 4e-09 MNETEIFNKVAELLAEHFDIEADKVTNELNFKKDLDGDSINFLEFVMDLEDTFGAEISDE DAAKLETVGQAVEYIKSHQ >gi|260196064|gb|ACQN01000003.1| GENE 154 169251 - 170255 1380 334 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 1 333 1 330 330 318 50.0 7e-87 MRKIAIDAMGGEHAPEAIVEAVLEAKVKLPNTKFLLFGDENKIKKLLADNSTDKQIEVIA TTEIIQDEDEPVRAIRRKKDSSLVVAARYVKEGKADGLVSLGNTGALLAAGIFIVGRIKG VERPGLMPTLPVKNSDLGFNMIDVGANAQAKPEYILKWAEMANFYAEKVRGIKNPRIALL NNGAEYDKGDDIHKEAYQLLKESKLNFIGNIEGNELLDGKADIVATDGFTGNAVLKNIEG TSSVIIHLIKESLLNGSLTTKLGALLIKSALKGVAKKFDTAKYGGAVLLGLNAPVVKTHG RSDKRAIYYTLLQMDKMIEEELIKLFVNDFSKQD >gi|260196064|gb|ACQN01000003.1| GENE 155 170264 - 172288 1806 674 aa, chain - ## HITS:1 COG:L0262 KEGG:ns NR:ns ## COG: L0262 COG1200 # Protein_GI_number: 15674226 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Lactococcus lactis # 5 655 3 656 666 612 50.0 1e-175 MLNNLFEPVTRLKGVGPKTAAALESLSIYSIYDLLFYFPYRYDDLEMIPLDQLNDGQKVL LKGIIATEPFVSRFGYKKSRLSFKLRIDHDIIMVNFFNQPWLKSQLEVGKEVAVYGKYNL AKQSLSGFKFVAAKSEKSSLSPVYPVNRHIKQKKLIELIKLALAQKQELMDIVPEEIRQK YRLMNDQELVEKMHEPKSPNEAKLAKRSAIFREFFIFQVQLALLTMRPQGRLGTAKKYDL NEIKKLTNTLPFELSADQKKVINELFADLHQKRQMRRLLQGDVGSGKTVVAVFGIYAAIT AGYQAALMVPTEILANQHFGKIDELLRPFGVRIALLTSSTKTMEKREIYRELADGTLNVV IGTHALIQPGLKFKKLGLVIIDEQHRFGVNQRQKLMIKGENPDLLAMTATPIPRTLALTA YGEMDVSEIRHLPAGRKPIVSAWITSSHLDQVLAKMKEQLSQGFQIYVVTPLIEESENID LKNAKELCLKLQSYFNHEKVVLLHGQMNGEEKDQIMTEFSQGDINILVATSVIEVGVDVP NANMMVIFDADRFGLSQLHQLRGRIGRGKTESFCYFVADPKTDIGKKRMEIISSTSNGFK LSEEDLKLRGQGDLFGKAQSGIPEFRLGDLVNDYNTMVVAQNVARQLVKTDPDLMENSAL KEVIDYSQKIKEID >gi|260196064|gb|ACQN01000003.1| GENE 156 172293 - 173909 2064 538 aa, chain - ## HITS:1 COG:SPy1885 KEGG:ns NR:ns ## COG: SPy1885 COG1461 # Protein_GI_number: 15675702 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pyogenes M1 GAS # 1 538 12 554 554 530 54.0 1e-150 MVRVATHRMGKNKEYVNNLNVFPVPDGDTGTNMNLTMESGARAVSESQSTSVGELVEALA KGMLMGARGNSGVITSQLFRGMYKATVGKQTLNAQELADAFSNGVATAYKAVMKPVEGTI LTVARVAAEDGKNAANDSDDVEVVMKAIVEGAKRALKTTPDLLPVLKEVGVVDSGGQGLL FIYEGFLEGLLGENFSDVYTPDIDEMDQMMSATHEQSQSKLSTKDIKNGYCTEIMVDLTK DIPGKKPFDLEEFRKHLSTLGDSLLAVSDDTIAKVHVHTEHPGEVFTYGQQFGELGKIKI DNMRIQHETIVDEAAKEEEKVDFAVVAVCSGNGVRQLFESGGVNRIISGGQTMNPSTQDI IDTIKKSGASKAIILPNNGNIIMAAKQAAEVCDIPVGIVQTKTISQGLTAMLAFNPDASV EENVEAMNEEASMVVSGEVTRAIRDTNINNVEIHKDDFMGIIDGNIEIDKPDLIDATCAM IEKMLDEDSEIVTIIYGRDSNKKQAEEVQAKLEESHDDLEFEIHDGGQPVYSFLVSVE >gi|260196064|gb|ACQN01000003.1| GENE 157 173969 - 174331 480 120 aa, chain - ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 120 1 120 121 118 55.0 3e-27 MAVKIKTKHGLIDVTNGVIATVVGSAATANYGVVGMASKNAIRDGVNEILNRANYKRGVV VKSVDNRITVDVYIIVGYGLKISEVSRNVQDSVKYNLEQQLGIQTKSVNVIVQGVKVLDE >gi|260196064|gb|ACQN01000003.1| GENE 158 174508 - 174693 313 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526050|ref|ZP_03956099.1| 50S ribosomal protein L28 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 125 100 2e-27 MAKDFVTGKKTTFGNKRSKALNSTRRAWKPNLQKVRILVDGKPKRVWVSTKTLKSGKVTR V >gi|260196064|gb|ACQN01000003.1| GENE 159 174764 - 175438 713 224 aa, chain - ## HITS:1 COG:L76216 KEGG:ns NR:ns ## COG: L76216 COG1564 # Protein_GI_number: 15673806 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Lactococcus lactis # 4 220 3 210 211 146 41.0 3e-35 MKGISLLGGPLELIPEGFFNELKYNNKFLLGVDRGSLFLVEKGLTPDVAVGDFDSLKKAE LAKIEKVVKDIRYSNPVKDLTDSELMIKTAFENYHLTSLKIYGATGGRLDHFLVNLFTFL KPEFQIYAPKVTLIDRQNVIRLFLPGKHHIKPLEGYSYLGIVNLTEVKNLSIRGAKYPLE NYTSAYPVSFASNEFVADKSVELYFEKGTIAVIYSKDLNRFANL >gi|260196064|gb|ACQN01000003.1| GENE 160 175425 - 176087 706 220 aa, chain - ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 3 218 4 218 218 201 48.0 1e-51 MIISPSILNADNLNLGRDIKKATQAGITRFHIDIMDGHFVPNLSYGPQLVQDFKREFPLV EAEVHLMSNNLETTIPAFTQAGADLLEFHFEATNKVDYWLDYLASNGVKAGLVLNPETDV ASLKPYLKKLKQVLLMSVHPGFGGQKYIPETAEKIAQLKQLTNEAGVNIPIEVDGGINDK TAPLAAQAGADILVCGSYIFKNGDIASQIRKLEGILNEGH >gi|260196064|gb|ACQN01000003.1| GENE 161 176121 - 177008 783 295 aa, chain - ## HITS:1 COG:BH2503 KEGG:ns NR:ns ## COG: BH2503 COG1162 # Protein_GI_number: 15615066 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Bacillus halodurans # 2 288 1 289 294 239 42.0 4e-63 MITEGIVISLIAGYYDVMTPNGLVRTRARGVFRKRQEKPQVGDLVKVQLDKHGTNYLIEV FKRKNRIGRPAVSNVSHVLLVISAVEPDFSVNLLDRFLTFFAWQRVPVTIYLSKADLATD EQVETIKKALNYYEEIGYRVFSNKEKIEQALLSLIKDNEIWTLAGQSGAGKSTLLNFLKE DAGQDTGEISKSLNRGKHTTRSVQLFAYSDGFIADTPGFSAIDLGPIKIKELQNYFIEFN KASQFCKFRGCQHIHEPKCEVKALLSEGKIAQFRYDDYLALRTEIEDQRLPEYLK >gi|260196064|gb|ACQN01000003.1| GENE 162 177005 - 178999 2112 664 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 5 313 4 309 342 331 54.0 4e-90 MITQGYLLGERYKILDTLGEGGMANVYLAEDIILQRKVAVKVLRLDLQRDPQTLKRFTRE AMATSELSHPNIVSVLDVDTDQGLPYMVMEYIKGPDLHQYLHDNYPLPFTEVIRIMDQIL SAVALAHKHNVIHRDLKPENILIDENTGKIKIADFGIAVALNQSTITQTNSTMGSVHYMS PEQTKGGLVTKQSDIYSLGIILYELLAGKVPFGGETAISIALKHLKEPLPDLKEIVPNLP QPLENVVLCATAKDPRDRYESVLTMKADLDTSLNPERANEPVFKPSHNPALEETRVIPTI ISSEDAALKNVKEEKKQKPAKKKKFWQTFKEHKVWLLSSIFAIIVVLICLILALSKTNQT TVPDVSDFDENQAKQSLQAAGLKIGEIEYQYSDKVAKGKVIKTLPTKGNSIEKGKSVDLV ISKGAGLTTVPDLVGVYYTQAKKRLEKLGFKVEKETDYSTEISRNYVMSQSIEAGERVNA AKTTIVIVVSKGSRKKAKPKQFKVKDLTGYSLKSAQDYAEENGLTLKTEERYSDTVEKGL IISQNPTAGVTMARGDTLEVVVSKGKQDSSSASSDSASSDSSSDTNSVNKSVSISYDSSK GNNGNGNHIQIYIADDNHQITNVYRDFYITQNTTLNIPFSLKNGSGTLIVVNDGTTVTNE RVTK >gi|260196064|gb|ACQN01000003.1| GENE 163 178996 - 179745 519 249 aa, chain - ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 2 247 1 244 246 193 41.0 2e-49 MIETAFASSIGRVRKTNQDFVQVYENQKSIKMAVVCDGMGGHQGGDVASTMAVSHLGHDF AKTDFVTAEMAKKWLQVQLKLENETILRAADRFPDLNGMGTTVVLAICFENNALIAHLGD SRAYLYSGEKFTQLTEDHSLVNELVKLGQITKEQARNHPQKNIITQALGVSSTINPEFNR PIIQENDIILLCTDGLTNSLEDDQIHQILATKSLSLNDRCKKLITEANRLGGGDNITVCL LLCKAGDKK >gi|260196064|gb|ACQN01000003.1| GENE 164 179751 - 181064 1106 437 aa, chain - ## HITS:1 COG:lin1936 KEGG:ns NR:ns ## COG: lin1936 COG0144 # Protein_GI_number: 16801002 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Listeria innocua # 4 434 6 440 446 329 42.0 8e-90 MTNSARAVALATLIKVFKQKGYSNLSLSHALNENNFSQKDQAFVTQLVYGTIQYQLFLEY QLKDLLRTKLKEDYLKPLLLMSVYQLIFLNRVPNRAVLDEANKLAKSFGKKNSSGYRLVN GILRSFLRRGQVLPSPKDPVHFLSIKESMPEWLVQYFIKNWGLKRTEKILPSLNKRAENS IRIAKGANQTQIINSLKKQGYSLTESTLADNCFLVNHSIVNTDEFKAGQITIQDEAASLV VDCFDLQENDYVLDTCAAPGGKTSQLAENLPQGKVISLDIHKKKLNLIKKYAERMHVDER VETLALDARKAAEHFSDTKFDKILVDAPCSGLGLLRRKPEIRYDKTMKDVHNLARIQLGI LNSAAQLLKKNGELVYSTCSITIEENEQVIAEFLKKHPEFEIMPITLSKVQSKESLKILP DTYGSDGFFIAKMKLRG >gi|260196064|gb|ACQN01000003.1| GENE 165 181057 - 182001 1018 314 aa, chain - ## HITS:1 COG:SP1735 KEGG:ns NR:ns ## COG: SP1735 COG0223 # Protein_GI_number: 15901567 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 313 1 311 311 294 50.0 1e-79 MTSVIFLGTPNFGATVLEGLIKDNYQVLAVVTQPDKKVGRKQKLTSSPVKEMAQKYDLPV YQPARLPRSEELDTLINLHADLIITAAYGQFLPTKFLKSAKIAAVNVHGSLLPKYRGGAP IQYSLINGDKETGVTIMEMVKEMDAGDMYAQEKLPIAPEDTAGSLFEKMAILGRDLLLKT LPSIIDGSCDKKAQDTTKVVFSPNISKDQERITKDMTASQVHNLIRGLNPDPGAYLMING QRMKVWSSEVANETTQLPAGALVDNHKRFAVSFANHTVLNLTEIQPTGKKKMAGRDYMNG KGASLKLGEVFIDD >gi|260196064|gb|ACQN01000003.1| GENE 166 182018 - 184411 2162 797 aa, chain - ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 2 793 4 793 797 759 49.0 0 MIAQVIVDVAAKQTDRIFEYQVPEQIADLTTGSRVVVPFGRRKVQGFVVGLTKTSQYQGK LKDLLLVVDEQAPLTPELVELSAYLAKTIFSYRISILQTMLPSVMRAKYRKILIPTTKQA EELQIFKGKSIDLAKVTDLEEIAQINQLLKKDMAKIEYAVENKAKEKTKKVYYLTSSLTD YKEIQQSLRSNAVKQAELLQFIIQHFEQFPFDSGQLKKYNLSFSAINTLVKKDLLKIKEV EQYRNPLTEFSKNIKRKIVILNQEQTAALQKINKSIEKSEAKTYLLEGITGSGKTEVYLH AISNALQKGKNALMLVPEISLTPQMVSQVNARFGKEVAVLHSGLSEGEKYDEWRRIRRGE ARVVVGARSAIFAPLSNIGLIIIDEEHEASYKQEDTPRYHARNVAIWRSQFHNAPLVLGS ATPSLDSRARAQKGVYELLRLTKRANQKALPEVKIIDLKSVEFAGSQFDLSTDLVEAIKE KLMRNEQIILLLNRRGFASFMLCRDCGFVLQCPNCDLSLTMHKDTNQMICHYCGFHQPIP NSCPNCQSSKIRFLGTGTQKVEEELSELLPGVRILRMDVDTTRRKGSYKEILDKFGAGEA DILLGTQMIAKGLDFPNVTLVGVINADTALYLPDYNASEKTFELLTQVAGRAGRAEKSGQ VLIQTYNPDHYAIKLAQKQDYETFYQTEMKVRYQGNYPPFFFTNLISVASKNEQNAAKEA FAIKRILMRNLHAPTIVLGPTPSAISKIKNQYYYQILVKYKREPKLNELLHQIQDLAQEK QKYGLNIYIDTQPGRIS >gi|260196064|gb|ACQN01000003.1| GENE 167 184466 - 184684 365 72 aa, chain - ## HITS:1 COG:SP1737 KEGG:ns NR:ns ## COG: SP1737 COG1758 # Protein_GI_number: 15901569 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pneumoniae TIGR4 # 6 66 4 63 103 64 63.0 4e-11 MKITYPSIDKLLDRVDSRYSLSVLASKRAHELEAGNPAALDKFKSSKSVGQALEEIAAGK VIIDPDHKTNID >gi|260196064|gb|ACQN01000003.1| GENE 168 184688 - 185302 881 204 aa, chain - ## HITS:1 COG:L149828 KEGG:ns NR:ns ## COG: L149828 COG0194 # Protein_GI_number: 15673881 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Lactococcus lactis # 1 203 1 202 205 243 61.0 1e-64 MASKGLLLVLSGPSGVGKGTVKSAIVETKAFPFEYSVSMTTRKPRPGEVDGKDYYFVSVD RFKEAINQGELIEYNQYVGNYYGTPLAPVKKMLSEGKDVLLEIDVNGAQKVREQMPDGVF IFLTPPDLHELKHRLVHRGTDSEAVIQNRMKQARNEIMMMSDYDYAVVNDTVANAVSHIK AIVEAEHVSVKRVIDSYRKMVEED >gi|260196064|gb|ACQN01000003.1| GENE 169 185515 - 185820 439 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851323|ref|ZP_05556712.1| ## NR: gi|256851323|ref|ZP_05556712.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 101 1 101 101 155 100.0 1e-36 MKNLQLIGKNLVTKTFNLFEDIFAYDQDQLSIIGQKQHYILANLSYALLHRSYILLTLKD NTNIIGKIIKVVPNNKIIVKNADTNAINIVNITDIFRTDIA >gi|260196064|gb|ACQN01000003.1| GENE 170 185875 - 187560 1869 561 aa, chain - ## HITS:1 COG:SP1202 KEGG:ns NR:ns ## COG: SP1202 COG0497 # Protein_GI_number: 15901065 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Streptococcus pneumoniae TIGR4 # 1 561 1 555 555 393 41.0 1e-109 MLVELDIQNFAIIKNLKIKFKKNMTVLIGETGAGKSILIDALSLLLGHRAQSEMIRSGEK KAVVTGLFTLEESQKQIVENLCSEYGLPLDGDDLIISRELSNKGRNVIRINGQLTTITVL AQIGQYLVDIHGQSDQQILMNQERQIDLVDEYAGAIFKVELEKYQSLFKKWVELTNKLKH LQKGAQELAQRHDILQFQKDELDSADLTDIDEDEKLEQEYSKLNNYQKIAETANYLMQVF DDDEHGLTTLLGNAQNAADELAEYGSDFKNMAQSLSDGVYSLSDSRSELGNIMDNLDFDE ERFQYVTNRLDTLNNLKKKYGPDLSDVFNFYQKISKELSQFEMGGLDEDKLQKEISQLED NMAASAQKLHQMREKTSSQLEKEIRSELADLFMEKARFSIRFVQSKTFNELGTDEVAFYI APNPGEELMPLVKIVSGGEQSRLILALKTIFSKVEPVGTMVFDEIDTGVSGRVSAAIGKK MHSIGQQKQVIAITHSVQVAASSDWRYKIEKHVEDGNTFTQVRILDDQESVKAIAQMMAG INITAAAEQNAADLIKRSHEK >gi|260196064|gb|ACQN01000003.1| GENE 171 187574 - 188386 744 270 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 244 3 245 274 302 61.0 5e-82 MAKERADIILFKQGLFNSRSQAQRAIMAGLVTDHLHQRIDKAGEKFPEDEKFYIKDDGQK YVSRGGFKLEKALKVFDIDLTDKLCLDIGASTGGFTDVALQSGAKKVYALDVGYNQLAWQ LRDDSRVIVMERQNFRYSKPADFTEGLPDFAMTDVSFISLDLIMPPMFDILKDQCDAVCL IKPQFEAGPDHVGKNGIVRDHNVHEAVIKHTIDKALEIGFDVLGIDYSPIKGGKGNIEFL IHLRKNLANPSQLLWDGDVKSVINAAVNQL >gi|260196064|gb|ACQN01000003.1| GENE 172 188386 - 189252 1037 288 aa, chain - ## HITS:1 COG:alr0213 KEGG:ns NR:ns ## COG: alr0213 COG0142 # Protein_GI_number: 17227709 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Nostoc sp. PCC 7120 # 27 269 40 287 309 184 44.0 2e-46 MTDFTNFYQKYQPIIDHYLEQHLSSEIEDKKFSQIMAYSVMAGGKRLRPLLFLATLISLG KEITEKEIRVACGIELIHTYSLIHDDLPAMDNDDYRRGMLTSHKKWGEAEAILAGDALLP MGLEWIASAENAEMVAVMANAIGPNGMAGGQYLDIDSTNNDAVKEDNNFINRMEWLKTGC LIKASVEIATIYAKADDLSRKKLVDFSANFGRAYQIYDDLVDVVQTSQEAGKATHKDEEE GKNNTLTLLGIDESRKELQELILAAKNNLTDLNSEVLLGFLNLYKKVL >gi|260196064|gb|ACQN01000003.1| GENE 173 189254 - 189496 428 80 aa, chain - ## HITS:1 COG:SPy1499 KEGG:ns NR:ns ## COG: SPy1499 COG1722 # Protein_GI_number: 15675403 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII small subunit # Organism: Streptococcus pyogenes M1 GAS # 3 71 2 70 71 60 55.0 9e-10 MPSKKNNFEEQLADLEKIVNNLENGNVPLDEALEQFQAGVKISRDLEKKLTAAEETVAKL IDKDGTEHELDPQNAAAPEE >gi|260196064|gb|ACQN01000003.1| GENE 174 189486 - 190847 1468 453 aa, chain - ## HITS:1 COG:L0254 KEGG:ns NR:ns ## COG: L0254 COG1570 # Protein_GI_number: 15672836 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Lactococcus lactis # 6 447 3 417 417 340 44.0 3e-93 MENHDKYLSVSDLNYYINLKFKNDPYLHQVFLKGELSNFRYRRNSHQYFSLKDEKAKISV VMFRSAFEKLKFKPEEGMKVYVSGYIGVYPPQGTYQFYAQTMEPAGLGELYERLRQLQDK LSKEGLFAAEHKKKLPRFPDKIAVVTSASGAVIHDIMVTANRRFPHAEIDLFPAQVQGDT AAESLVNAMNQIKERASEYDVMIIGRGGGSLEDLWPFNEEIVVRSVYSMPMPVISSVGHE TDTTLCDLVADVRAATPTAAAEYATPNLSDELAGLHQLQSRLLTSMQACIRERKQALLRI QNSPIMREPMRLYDQQVQSVDQLTGRLMQIIKVILQNNRQNLKISEQKLLAQSPKRLLER TKQSNDYLNQRLLNAIKTLLKDKRIAFQQQVQTLEDISPLKVLSRGYVYTTDQAGKTIMS TKNIAKDEVLNLHFADGKAKAKILEVEDNEDAK >gi|260196064|gb|ACQN01000003.1| GENE 175 190834 - 191685 930 283 aa, chain - ## HITS:1 COG:BH2784 KEGG:ns NR:ns ## COG: BH2784 COG0190 # Protein_GI_number: 15615347 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Bacillus halodurans # 2 273 3 274 279 275 51.0 9e-74 MAEILDGKTLANTLSEEIKEKVKAMSINGIKPHFCVINIGDDPASKVYVRAKKRRAEKLG IDQEIFQLPAETTEEEALALIQKLNNDPQINGVMVQLPVPDQINSDHLIEAINPEKDVDA LTAANVGRLWQGTHFVKPATACGIIDLLDHYQISLDGKRAVIIGRSNIVGKPLAALLLER NATVTLAHSHTKNLTELTKQADILVAAVGKAKLVTADMVKEGAVVIDVGINRIDGHLVGD VDFDNVKKRASYITPVPGGVGPLTVESLMQQVVALTRRQNGKS >gi|260196064|gb|ACQN01000003.1| GENE 176 191732 - 192133 460 133 aa, chain - ## HITS:1 COG:L92686 KEGG:ns NR:ns ## COG: L92686 COG0781 # Protein_GI_number: 15672676 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Lactococcus lactis # 42 130 235 322 323 74 43.0 5e-14 MSQHDSRRIAMQAIFLANGEPDLTIEQVETKVAKSLDLKVIPAYAHEIIAGVLAKKSEIE ADISKYLRKGWRLERVNRISVAIIEVAIFEISQSDAISAPAAVNEALILCEEFDDPKSKS FINGILANFMPSK >gi|260196064|gb|ACQN01000003.1| GENE 177 192133 - 192579 587 148 aa, chain - ## HITS:1 COG:BS_yqhY KEGG:ns NR:ns ## COG: BS_yqhY COG1302 # Protein_GI_number: 16079489 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 135 1 134 135 80 38.0 1e-15 MADSSTILLTSNQTGDEIKIDLSVLEVILAIAAEKVDGVAAMRGSLKSGLNWVLGRQDRG KGVAVSVDQNHEIIADVYAYFDAGVNVPKVAAKIQEKLAGQLSQMTDLTLTTVNVHVVGL IFPDEKAHVTKVEEDKKELFPESEKDGE >gi|260196064|gb|ACQN01000003.1| GENE 178 192604 - 193173 719 189 aa, chain - ## HITS:1 COG:lin1392 KEGG:ns NR:ns ## COG: lin1392 COG0231 # Protein_GI_number: 16800460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Listeria innocua # 3 187 1 185 185 254 65.0 5e-68 MTMISVNEFKNGLTIEHNNDLWRIVEFQHVKPGKGSAFVRSKLKSLRTGAVQDYTFRSTE KVNTADIQTKPMQYLYNDGANYVFMDMNTYEQLEIPNSEVERESKFLKENMEVNVIMHES ETLGIDLPNTVDLEVAETEPGIRGDTSSGGGKPATMETGLVVNVPFFINAGDILTINTSD GSYVSRANK >gi|260196064|gb|ACQN01000003.1| GENE 179 193242 - 194348 1246 368 aa, chain - ## HITS:1 COG:SA1360 KEGG:ns NR:ns ## COG: SA1360 COG0006 # Protein_GI_number: 15927110 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Staphylococcus aureus N315 # 12 366 2 351 353 259 40.0 6e-69 MTDSLLLTLTQARIKKVLELMKQYNADAFLIFNQANYRYLTNFTGEEAQLILTNKGDRYL LSDSRFSGQIQAQASGELTAIMKQTGDVNEISRILKKLAVKRLILEGEFVSASEFSNLKE ANPNCQFILVEELIEQVRNVKDELEVKALQKAISISIESFKQILPMIIPGAVEREIAAKL DYLFKLNGGDGPSFETIIASGVRSSWAHGVASDKVIKQGELVVCDFGSFYNGYTADITRT VAVGEVDTELEKIYQIVHEAQRRGIEAAVVGNTGADVDKAARNYIVEQGYGEYFGHGIGH GIGLEIHELCMPALPFKKQKLVNNMAITVEPGIYLPEKGGVRIEDDILINEQAPVTMSFF QKDELIHL >gi|260196064|gb|ACQN01000003.1| GENE 180 194414 - 194713 511 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526027|ref|ZP_03956076.1| 50S ribosomal protein L27 [Lactobacillus jensenii JV-V16] # 1 99 1 99 99 201 100 2e-50 MMMNNFSTMNLFAHHKGGGSTANGRNSAGRRLGAKRADGQAVNAGSIIYRQRGTKIHPGK NVGIGGDDTLFALVNGVVKFERLGKTRKQVSVYPVEEAK >gi|260196064|gb|ACQN01000003.1| GENE 181 194732 - 195094 603 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526026|ref|ZP_03956075.1| ribosomal protein L21 [Lactobacillus jensenii JV-V16] # 1 120 1 120 120 236 99 5e-61 MKAPGLASLSIFYGGVQMYAVIKTGGKQYKVAKGDSVFVEKLDVEAGEKVTFDQVILVSD GKDVKVGTPLVEGAKVVATVEKQGKEKKVVTFKYKPKKHSHSKYGHRQPYTKVTIESIEA >gi|260196064|gb|ACQN01000003.1| GENE 182 195222 - 195797 487 191 aa, chain - ## HITS:1 COG:L104745 KEGG:ns NR:ns ## COG: L104745 COG1814 # Protein_GI_number: 15673457 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Lactococcus lactis # 23 188 12 221 229 103 33.0 1e-22 MKRTFTFSRFIKIKSQCFWDKLNIIRAGILGANDGIISVSGIVLGASGANLDSKTLLIAG LSGMLAGACSMAGGEWMSVSTQRDILMKKLENQTVDEDLKLEKTDGLTPISAALSSFCSF IAGAIIPLCAMTLSPMNLRIPITLCAMVVSLALNAFISTLNSEASVKKAIFRNIFTGVLT GVITFTLGSAV >gi|260196064|gb|ACQN01000003.1| GENE 183 195897 - 197300 1703 467 aa, chain - ## HITS:1 COG:SPy0290 KEGG:ns NR:ns ## COG: SPy0290 COG0719 # Protein_GI_number: 15674464 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 11 467 16 472 472 657 67.0 0 MTDEAIKNLGGQYQYGFKDDIEPIYTTGEGLSEEVVRKISAAKNEPKWMLDIRLAAYKTY RKLSLPNFGPDLTKLDYEHINYFRRDSDFVARKWEDVPEDIKKTFDKLGVPQAERKYLAG SSAQYESEVVYHNMRKQFEDMGIIFMDTDTAVQKHPDLVKKYFGKLVPASDNKLAALNTA VWSGGTFIYVPKGVSCPTPIQSYFRINAGNSGQFERTLIIVDEGAHVNYVEGCTAPNYSA DSLHAAVVEVNVLKDAYCRYTTIQNWSNNVYSLETKRAQALENATMEWVDGNLGSKVTMK YPSIYLNGQGAHGNMLSIAFAGKGIDSDTGATMVHNAKNTYSSTVSKSLCKDGGIADYRG HIRFNEHCDGSFAHVECDTIIMDDKSSSDTIPFNEVLNSNVSMEHEAKVSKISEEQLYYL MSRGISEEKATEMIVMGFVEPFTKELPMEYAVELNRLIQLNMSGGIG >gi|260196064|gb|ACQN01000003.1| GENE 184 197300 - 197743 402 147 aa, chain - ## HITS:1 COG:SPy0289 KEGG:ns NR:ns ## COG: SPy0289 COG0822 # Protein_GI_number: 15674463 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Streptococcus pyogenes M1 GAS # 5 141 6 140 159 116 44.0 2e-26 MSFNLTDLYRESIVEAAQAPRHHGQLKKKNATVELHNPSCGDVLVLDGYFENNKLVDMAF SGYGCTISQASASLMTDQVLGQEISEIKDEVMLFSNLITDKLNQAEKDRLGDCIMLEGVK EFPARIKCATLAWKAIYQLIENYEGQK >gi|260196064|gb|ACQN01000003.1| GENE 185 197740 - 198933 881 397 aa, chain - ## HITS:1 COG:SPy0288 KEGG:ns NR:ns ## COG: SPy0288 COG0520 # Protein_GI_number: 15674462 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Streptococcus pyogenes M1 GAS # 6 395 8 404 408 445 55.0 1e-125 MKNNYKADFPLLKNSDLIYLDSAATSQKPQCVIDRLSKYYQSQNANVHRALYGLGEATTA KYEQARKHVADFINADQDEVIFTKGTTQGLNWVANGFAQSILKPGDEILISIEEHHSNLV PWQIIAKKTGAKLVYVYLTPNLEFDYDDYEAKLNSKTKIVALHHMSNVLGNILDLSKIAK LAHSFGAYLVVDGAQAAAHIEIDVQKFDCDFYAFSGHKMLGPMGIGVLFGKKNLLNQMTP VEYGGEMISEVSQQSVSFKSSPLKFEAGTQNVAGAIGLDTAINYLKQVGISNVKAIDYEL CKYARSRLEEIGGVSIYGEANNGIISFNLDGIHPHDVVSFLDADKLCLRAGHHCAEPLMN YLKIPACLRASFYIYNDFSDIDALVKSLNKIKEFFGK >gi|260196064|gb|ACQN01000003.1| GENE 186 198923 - 200152 1314 409 aa, chain - ## HITS:1 COG:SP0868 KEGG:ns NR:ns ## COG: SP0868 COG0719 # Protein_GI_number: 15900751 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 2 409 4 420 420 370 46.0 1e-102 MENVETLAKKRLEPTWFSEIRENASQLIGKTPYPDFKKLKYKHWDLHLTGNFIPTESFAS KANVVQAGENLAQINIPDEYRKKGVIVADFHDALQNYPKLIKKYFMTKGLKASDDEFLAE HVAYLQSGLFIYVPKNVHVETPLTCEYLQKAALGSEYVHHVLLIVDEGSNFSYIEKLTSQ GNEASKVNFVCEVIAKKNSHVHYTSIDNLAENVTSYLNRRGYLEKDAKVDWAMALMNDGL TLGDFNSDLVGDGSHAELKAVGISTNNQVQGINTRVTNYGNNTIGHILQHGVSLDKSTLI FNAVGHIMKGSKGSDAEQESRILMLSQGARGDANPILLIDDNDVMAGHAASIGRVNPEQL YYLMSRGLDKKMAERVVIRGFLSPVLEEIPTADLKQVFSDLIERKISEK >gi|260196064|gb|ACQN01000003.1| GENE 187 200164 - 200955 1064 263 aa, chain - ## HITS:1 COG:L34806 KEGG:ns NR:ns ## COG: L34806 COG0396 # Protein_GI_number: 15673775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Lactococcus lactis # 1 257 1 253 256 331 63.0 8e-91 MSTLEVKDLYVSVQDNNEEKQILKGLNLKMSTGEIHAIMGPNGTGKSTLSSTIMGDAKYH INSGDILLNGESILDWPVDQRARAGLFLAMQYPAEIPGVTNAEFVKAAVNARRPKNDPVP MGEFMKELQTTLKTLDMTMEMAGRYLNQGFSGGEKKRNEIMQMMMIKPSFAILDEIDSGL DIDALKVVSRGVNLMRGDNFGALLITHYQRLLNYIEPDFVHVMMGGKIVKTGDASLAKRL ENEGYAKLRDELGLDIKLVDEDA >gi|260196064|gb|ACQN01000003.1| GENE 188 201605 - 201784 188 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851341|ref|ZP_05556730.1| ## NR: gi|256851341|ref|ZP_05556730.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 59 1 59 59 85 100.0 7e-16 MRKEEIEEYIQREIRKPPVDYQISDPFIESLNDEEMAYLEKRLIELSKTWQPPYEYLGP >gi|260196064|gb|ACQN01000003.1| GENE 189 201825 - 202118 236 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851342|ref|ZP_05556731.1| ## NR: gi|256851342|ref|ZP_05556731.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 97 1 97 97 184 100.0 2e-45 MEKIKCPSWEWEWATHDMIHEGTLRTNINLISHICFLKTERILNSDQYYYVDDINELIPD TMNAEEKAVFLSKLKKVSQKVSVPDDFDKKLRKQFQE >gi|260196064|gb|ACQN01000003.1| GENE 190 202162 - 202368 261 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851343|ref|ZP_05556732.1| ## NR: gi|256851343|ref|ZP_05556732.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 68 1 68 68 104 100.0 2e-21 MNDKDDFAKQMEIGQKRLEKVWPKKIEISLRVWKRRHDAGRVPDDYYEKIRKALLKSLDD WNKRHGKS >gi|260196064|gb|ACQN01000003.1| GENE 191 202529 - 202711 272 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282933208|ref|ZP_06338595.1| ## NR: gi|282933208|ref|ZP_06338595.1| glycyl-tRNA synthetase alpha subunit [Lactobacillus jensenii 208-1] # 1 60 1 60 60 105 100.0 1e-21 MRRAEIDKFIQEELSKPPVDAQYAQHPLLDSLSEEEWNYLDNRLKEIEKTWENPYFNIGA >gi|260196064|gb|ACQN01000003.1| GENE 192 202751 - 202888 137 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKTMTEAEKNKLLREKIQQFLHADPMDVIGDDTILELIDLENEK >gi|260196064|gb|ACQN01000003.1| GENE 193 203117 - 203350 323 77 aa, chain - ## HITS:1 COG:no KEGG:FI9785_830 NR:ns ## KEGG: FI9785_830 # Name: ps128 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 76 1 76 77 79 53.0 4e-14 MFTIKLVSNSKDKVIYDIWNGDTKKCINQIEVNKRNLSYRLKNNQKLSNSYEAGAYRAIM KAIKDDSYPEQFSNGWI >gi|260196064|gb|ACQN01000003.1| GENE 194 203534 - 203776 294 80 aa, chain - ## HITS:1 COG:no KEGG:FI9785_830 NR:ns ## KEGG: FI9785_830 # Name: ps128 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 4 80 1 77 77 103 70.0 1e-21 MRRLFTIKLVSNTPDTLVYDIWDFDRNEYVNQIEVSKKDLSYRLKNNQKLSNSYEAGAYR AIMEAIQFNVAPQEYSDGWG >gi|260196064|gb|ACQN01000003.1| GENE 195 203819 - 204007 283 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851347|ref|ZP_05556736.1| ## NR: gi|256851347|ref|ZP_05556736.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 62 1 62 62 100 100.0 2e-20 MRKAEIDEYIQKLINTPPTIDGQYTTEFEDSFSKEEWNYFIEKLTEISFTWTPPDEYFYK GP >gi|260196064|gb|ACQN01000003.1| GENE 196 204524 - 205582 1114 352 aa, chain - ## HITS:1 COG:no KEGG:llmg_2082 NR:ns ## KEGG: llmg_2082 # Name: ps461 # Def: bacteriophage lysin # Organism: L.lactis_MG1363 # Pathway: not_defined # 3 191 2 192 285 137 42.0 6e-31 MKHGIDVADPYQRYITSEVVGDFVIVKATEYTTYKNPSMEKQLMIKPLKGLYHFATGGDV IAEANHFLNTVKPYIGKAILALDYEATALTMWGVSQVKQWLDYVYNKTGVKPYLYMSLAT ENAKNWSSVADKYPLWVAQYNNAGFYTPIYGYQPRKLNGSLKYWKEAKIFQYASYGILNG YTGRLDLNVCYDDWDTNEKAIDTGEDFEMTWHPYVRYDTKGIVKVNNEDGAPLYSNSNLT GDPVKKLDYGSSWQAFEQVGGAINLGGNQWVNSKDVIAKWNQLAYNTAASAIGIVIPENG MWTQNEMKPSQGIKYLKTGERYLIFGRTDKYLNVGGEADGKYASGDNMYIVL >gi|260196064|gb|ACQN01000003.1| GENE 197 205582 - 205968 528 128 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282933202|ref|ZP_06338589.1| ## NR: gi|282933202|ref|ZP_06338589.1| phage holin, LL-H family [Lactobacillus jensenii 208-1] # 1 128 1 128 128 225 100.0 8e-58 MSELKLILDTIALTIGVGLSIVAGFYAYYKTKINKNTAWGKTIDTVGQLATWVVHEAEHS KMNNADKKAYASKAIVDALHKYGIKDVDEQLINGAIETAVNNMHLKNESESSTTEKSPEK TPAPAIID >gi|260196064|gb|ACQN01000003.1| GENE 198 205943 - 206155 217 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851350|ref|ZP_05556739.1| ## NR: gi|256851350|ref|ZP_05556739.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 70 10 79 79 67 98.0 3e-10 MRDIITLLQVLTPLLLGLGTFYLNNKTSDRKFIDKELERADKEINRKDREITKLKKEIEE LKNERTKIDS >gi|260196064|gb|ACQN01000003.1| GENE 199 206170 - 206559 364 129 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851351|ref|ZP_05556740.1| ## NR: gi|256851351|ref|ZP_05556740.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 129 6 134 134 238 100.0 9e-62 MKKFKKLLQNSKNDTIFIYIGLVMLTVGISLWINQSYFFFPPQWNSLMNNNGLDGIAVAC GLGLIIYAFDNNKNRKLRGILLGYSSAFVGLMALMELWHAILAGQTRMIETIIFEIFFIV VIFHEAWQK >gi|260196064|gb|ACQN01000003.1| GENE 200 206546 - 206713 203 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851352|ref|ZP_05556741.1| ## NR: gi|256851352|ref|ZP_05556741.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 55 1 55 55 109 100.0 4e-23 MLTITPGIQANFAFLYKMQYDWGLLSAQAIKNYCDEGLITKEQFKDCVGKAYEEV >gi|260196064|gb|ACQN01000003.1| GENE 201 206713 - 207126 492 137 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851353|ref|ZP_05556742.1| ## NR: gi|256851353|ref|ZP_05556742.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 137 1 137 137 225 100.0 8e-58 MTLEEKIKNLQITLANGTVGSLVYLSGRLGNTEYTCEPVLLPFKLEYTQYPYVLEAPEGL NNPVYDWSKSQWVEQDKEALGYRLSQAEEKLSTLNTQSEKHETENTETQSALDKIQQSQL QMTQLLSQILASKGGAQ >gi|260196064|gb|ACQN01000003.1| GENE 202 207132 - 209960 2599 942 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282933197|ref|ZP_06338584.1| ## NR: gi|282933197|ref|ZP_06338584.1| hypothetical protein HMPREF0886_2665 [Lactobacillus jensenii 208-1] # 1 942 1 942 942 1724 100.0 0 MENLNLDVNKKRELTTPIRLRQRDKNSHTIHASIFDHGVTYDLSKKSVQFNASKPDGTII QQSASVTGNVIEYTLPEQATAVTGKVKCYFSILDSSGNVVDSTATFYLEVEDAINLTAGS KSYIESIDAIKSNFESKVATINAQLDKVQQDLNNKNASGQDVLNRINKIKSDAESALAKL NSDAQATLSGIDSKITSLVNDKWNTKSEDLDTKYNSHIKELDGSWNTLRDKALQQSNEIT NKNNQASSLIASITNTKDDAEKALEKLRNDASTTLSNLEKSANSLVAQAVADSEARIAGN LIDPNLNNWTKSDVAQQAFKSINFDGTTNSIAYQGVSGTEMIWTKLNLELYKHYKLRFRF TPKSDIRDLQNGTNDKIKIAIWRTLPGIGPWGGEQGTPNLTSQIKDIAINQDKFYEVGFY SDNAKELYFAFNFHNVRDDVAYNFEINSISVVNIDNTIQSLADSSYSRKFGASGDDLFSY KNNHEIRIYDNVSDVKNKPSGASNWFVAVIDTVRNSWGNIKIFCPGVGSWQIDLTAGNWN SWFTLFDSRNAYSKSEIDKSFVKSVQGVKPDGNGNINLPNQNVAFSFDSSTSEPNMRMTS YLNYWPVDQNAIKDVLKNQLPNKYAGKNIVNISNPMFYSTQSVDDFTAMGSPNKTQTLTV YRSDFNAKDDGKPGLANYSQGIIFGAWTERGVLSISNREHKARIAGGTYPGEPNGLPVWS EDIAWKSDFANYYNKSEIDVKVNISDSLSRGLIDQGTTWQQIFGNDALNTNTGHLTVFKN SSNDYRPYIYGYSASGIAFGAGDTRGILSVRWDQPGIMIAGGNGTGPKWARELAIKDDFA NYYNKSETDTKTNNLQTQVSTLQNRCESLETQLTVLRNQMNNLLSVINVSNGTAIVNGTL AINGQIQSKYGGTDQYVSYAPNGTRRGYFGFYDGGDFVTRKG >gi|260196064|gb|ACQN01000003.1| GENE 203 209887 - 210132 216 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851355|ref|ZP_05556744.1| ## NR: gi|256851355|ref|ZP_05556744.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 81 1 81 81 104 100.0 2e-21 MFKEQFLQPEAVIEELKRQLGEAEYRATVNSLIVENFRQTMANLAAKYPEIRKELEENGK PQSGREQETRTNNSNTAETKR >gi|260196064|gb|ACQN01000003.1| GENE 204 210142 - 213192 2796 1016 aa, chain - ## HITS:1 COG:SPy0700_1 KEGG:ns NR:ns ## COG: SPy0700_1 COG4926 # Protein_GI_number: 15674761 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 4 224 2 216 431 84 26.0 1e-15 MLKLPILYENSNENLDSLGLGAMSGVIDWEVTTDINSIPKLTMTYDGNAYLANEIKVDRV IMADASSKRRNQLFRINKAVKKVDDSGAKTIAIEANHVAGDIVLDSLKKNISLANANPKQ FWNALVESLSSGTPEFSFSSDIKTVANINLEWKQVSTLQEVLFGTGASSFCKLFNGEWSF DNYHLSFNKKQGTDTGIVIKYGQNLKSLEQDEEIASMYTAIQPYATKKENQTTPSTEINA TAYEGVGLVQYLGAGGLPVYDKPNGKFEGRNVENGQHIQLSKQYTDGQSQLWLQLEDGGW ILGKHIVVDKKGAWISQKVVGQGHIKWNISSDGQGNIYETVNGVLVANYIFGDVPIYSQP TSDSVQKGFLDKRNARWIVFYKTKDSNGVTWYDLGNNQWVSNRYVEFDKDSSYTYTPGRG VGTVNHDVKNNQKQLEGVAIWDSPSYSSKVVKYVYHGQRYQIFQIASNNGKTWYNLGGNQ WIDSQYINFDKNDRDVKPKTDSELGNEGVPTPRYSGKVVVYDKPGYGQQPTGKFLYSGDL VNISSQASTGSGTWYEIGTGQWINGSYVDFGSHDTDVDPYDPSKDIIVDISQSQDNTITL PEIYVKSANADKFEHLKIQKVDLSQYNIDTEDKLREVAKAYIYDNRIGEPTTSLTVNYYQ MQGELAKLTDVDVYDLGTVFFPKYDINLTSEVTTGKWNGPKQRWESITFGKQPETLRDTL DKYLSTVENNSKNFASQAVDDASQKIGQSVDIKWWKLHEDTSKDLLNLQTEFGKRYSDLS SALDTKTNDTKVITQQMINDATKKYNDGVQNILQEMSNNYVAKAALTGGDLTYGRDAVTA TTRTGGHMQFSSEGLVITDKNGHSQVAISGEDGSAALAHDLVAKRINGYTIEAANILSGT IEAGVQIKAPYINGGQIDGASMLRVSSDEGNCVMTPKYGFSTTQGLKVSGLSNLEGGVNI GTRLNVDGATLITGNLIVAGQIFIKTAGIEQIVFQAPNGIRRGYLGFWDSGKFQTS >gi|260196064|gb|ACQN01000003.1| GENE 205 213186 - 213929 468 247 aa, chain - ## HITS:1 COG:L63101 KEGG:ns NR:ns ## COG: L63101 COG4722 # Protein_GI_number: 15673032 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 36 245 34 247 249 73 30.0 4e-13 MNEPVLTYRGKTNLDFDMHLDVGSDFEFGTGSPSFTSNEVAGLNKTLLDFNNYKNFDQKF TFYAIHRDVTSDEAKRRITSWLLKEPGYHKLLLSMIPDYYMIASPNSNSVLKFPAYNKRF SKVEINFSIQPFMYHLEGQNPFDIKPNNILSINNPEEYEAEPLIHIVGNSDVTLTVNNSQ FKITSIDEEVYIDSENCLVYKSLDQLRNRNAIFPDHNFPILQPGTNSISITGNYSSATIT PRWRTLC >gi|260196064|gb|ACQN01000003.1| GENE 206 213929 - 218341 4708 1470 aa, chain - ## HITS:1 COG:lin2383 KEGG:ns NR:ns ## COG: lin2383 COG5283 # Protein_GI_number: 16801446 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Listeria innocua # 139 1210 62 1060 1601 314 26.0 7e-85 MADGNLGHLSVQIGLDIKPFLTNAVALKSQISRTAKLIGTLQERMNNGWGKGTANTLFKA QSSQLELLNKRYQYLTQSVKEAQDAISKGGGVDAQRQLVGRANNLSQTALQIDNLKQSMV TSYQQMVKYQSGWGQLSEKLTNFGSKAHAVADGLRNIGSWGGTMAVGGALASAANKAMEF KSQIAQIGPLLSNTGRITSSIRGEMEQMSNASLKWSQQYGVSTTEINNSMMELIRRGFTT NQVMGSMPALLDAVKASGEDMNTVMQSSASVIEAFGLKADTAAQQTKNMRMVTDGLTYVA NATASSYADLSTGLNYVGQTAAAAHVSFMDTAIALGIMSNKGVEASTAGTALRQMFTTLT KDTKVNRAHLKAIGLSFDEIKKKGIDLPDIIDRVSKALADKTPTEQMSLLNAAFGKTGQS AIALFQKSKAGSKSAAAEFREYQKEGNAAAGVTARIAKEMNNTPQAKWERFKQTLNAVAI EVGSNLLPALEPIVKSIGDIAKAFGKLDPATQQAIVKFALFYAAIKPITSFIAGPIDAIG SLSSGLGKLSDKLGMLKAGSNSSIWKLLFGGATEAAGGIKTAGTAAEVAGESASKSGGLF AKLAGVLKGTAPAAAEAAGGATVAGTSIAEMGAGASTAGAGLGALIPSVGALGSALLPIA GIALAAGAGIWAYSKYVYPAIDAQNKHYDSVKKWGAYVPPVVDKVATTYKEKTAEMSDAL ADTSKKTKDYNNQVKKSFEELASSAQQSLDKQTQALKKLGKEVGGSAGKYLQDEANSKKK SGSKYVDEIKQYAEIVDKTADFASSKNRKLNAEEQMLVQNLTSRSASAYVKTLNLTKNQT QQVLAAIDGSIKGTMRWSTGDKIVAQFKDGYDKFYANINKGKEALKKALNDGLINKDEYD SAIAKQERDMNEYQNKIALSMGRVMKASGRSLKQIRDRFRLDFGNELGDQMFDKYLAGLK KVSDANSRFLSETGKLSKAQKKAAQDWNDMILDPKTGEVRTNLPEFLKEQVNSKEGWEKL QYIRKHAKLTTNVKAEIAKAIFESNRWNSMSLKEKKAVIVSDTGKGLFDSLNKIKEWNNL TPKVQEAIVTAKNKQELYDSINDLKTWNSLTADQKQIFIDNADAREKIRLTLMDLQNYDG LTPKEKKLIADASNAKGSIEEALKKAGVWNQLPVGVKQLIADNSNAIQKSDEAKHHIDLY NGKKPVLKYFKGNSSSAQSESAKGRGAIDKYNGKTTRTKYLKVNSSSAVSGANQAVNALS SFVNGFKDNIVKTVSVVFGGIKGKHATGTPGAWLFNPNAYAYGTPNTGAQGGLAWVGDGG RKEVVFDSAMKAFYETPKTPTLVNLPRGSMVWRSVEQLEQAMRHAKLFANGTLGNSIVSL ANQIPDDVSGAVKAMRAPSINVDNSNLLELQEQNNELLATLIEQNQQMLQALMNLGFSFN VDGKQMANAQAENNSKAINEYLKRTGLRFS >gi|260196064|gb|ACQN01000003.1| GENE 207 218357 - 218542 277 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851359|ref|ZP_05556748.1| ## NR: gi|256851359|ref|ZP_05556748.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 61 15 75 75 103 100.0 4e-21 MEKELGYKISEILNMSPLEFKTFVDSMQDPKKLDREIESSDELTTLDQAFPGIFSDPFAN K >gi|260196064|gb|ACQN01000003.1| GENE 208 218596 - 218931 391 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851360|ref|ZP_05556749.1| ## NR: gi|256851360|ref|ZP_05556749.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 111 1 111 111 200 100.0 2e-50 MKKDKIVLFIDGKEETFERDLAKNPLNLTDYTNAGYLTYASANFNKKEEIKPKDVDNIME ANIKFIVAYFQNQFTYDQCKNGLNPAFMNVLLPKLLEKAQGVVGGEEFPKK >gi|260196064|gb|ACQN01000003.1| GENE 209 219055 - 219684 825 209 aa, chain - ## HITS:1 COG:no KEGG:LC705_00882 NR:ns ## KEGG: LC705_00882 # Name: not_defined # Def: phage-related major tail protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 8 195 13 197 205 130 40.0 3e-29 MVNYRGEAKIGVENLEFAQLDDAGFVVGETVKLPGTTQIKTSISSENATLSADNGPYLSL SSGIEKVTETINNYFITPEVKRLMLGVQYALGTEIYGEKTLPNPVASLYSSKLAKSGKNV WVACLEGRFKFPSGESKTLGSGAPDPATEEVEGEFIMKPVGDTKQIMLIGYESDPDFDLA TFRSLVFPKNDSELTAAWAKVKAKLNPSS >gi|260196064|gb|ACQN01000003.1| GENE 210 219688 - 220113 497 141 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851362|ref|ZP_05556751.1| ## NR: gi|256851362|ref|ZP_05556751.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 141 2 142 142 257 100.0 2e-67 MLATSKIYQTLIGNDTLISMMTSMRESEVEDENMIFNDQIPEEFQAAQYAPIIRINHIPA TMRSADNQYFAEKPSVLVSFWVKSLAQLEELKPVIEKILIDINYPLYNVDYEPDREASQD NPENKLYICRIYVHGIELTEE >gi|260196064|gb|ACQN01000003.1| GENE 211 220113 - 220514 557 133 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851363|ref|ZP_05556752.1| ## NR: gi|256851363|ref|ZP_05556752.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 133 1 133 133 233 100.0 4e-60 MAVQGEAELEAKIQELMTKSVATQNTVLDEVAKEFAERLESNIPRGAKSTRKTHIKSEVK IGKPRLRQGVREVSVGIQGSSSTGPLPAWRAHFWDTGSLNNPPTFFSERTRDQMSPEIKQ AIIEAFRETLGTK >gi|260196064|gb|ACQN01000003.1| GENE 212 220514 - 220759 228 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851364|ref|ZP_05556753.1| ## NR: gi|256851364|ref|ZP_05556753.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 81 29 109 109 137 100.0 3e-31 MVPVKKLWADVAKSTLKEYREDANLLEGKEKVIFLINSMAAKDITRKNFIQFKDKNYNIT DIQRDFETHDFDKFTGVEVDK >gi|260196064|gb|ACQN01000003.1| GENE 213 220731 - 221144 415 137 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851365|ref|ZP_05556754.1| ## NR: gi|256851365|ref|ZP_05556754.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 137 1 137 137 247 100.0 1e-64 MDLTEFKNYLRVDFDDDDSVIEAYYTGAENYICLAIGKNVKPTDLEQYEQFKPASLLLGA FWYNAKMAVQQTATVKANTDEIPFGVSALITQLKARYWEDYVTKQNESTNSNNEEDKSEN SAGRLEISNGSSEEAMG >gi|260196064|gb|ACQN01000003.1| GENE 214 221388 - 222524 1481 378 aa, chain - ## HITS:1 COG:no KEGG:LC705_00876 NR:ns ## KEGG: LC705_00876 # Name: not_defined # Def: phage-related major head protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 374 1 398 400 263 41.0 6e-69 MNLKEQLLAAKKAYNEMIDEKRSLLEDADKNTADKNISEVRSKVEEIQKRMKAKETEIKD LEALIEEAKNSRSGFNINPENPEPEGEDEAEKQYRMANHYLHTRDAQSAGLKSPDAALTI PKDVKYVPVDEVKTIDDLSQYIHMVNVTSAQGSYPVRQKPNTTSLHSVEELAKNPDLAKP SFKNIEWKVDTYRGAIPLSQEAIDDSDADLVSIVAQDLKEQKILLLNDKILNVMKTFTAK TVSSVDELKAIKNVALDPGYKHKVMVVSASFYQWLDTLKDKDDNYILNRSITANSPDICL GLPVFTVRDTTLGQAGEMKAFIGDIFEGIFGANRKDLQARWVDDSVYGQFLQGVTRFGIT KSDEDAGFFVTATPSKAS >gi|260196064|gb|ACQN01000003.1| GENE 215 222524 - 223078 526 184 aa, chain - ## HITS:1 COG:L67524 KEGG:ns NR:ns ## COG: L67524 COG3740 # Protein_GI_number: 15672453 # Func_class: R General function prediction only # Function: Phage head maturation protease # Organism: Lactococcus lactis # 7 182 16 194 195 132 42.0 2e-31 MEVRNLTQAPMMEKESRTIKGTAVVFNSRSEQLGDFTEFIDPHAFDDVDMSDVVLLYNHD SGSVLARTSANTLKLNLDERGLHFEAAIPETTLGNDTLTNLRNKNISGMSFGFDIADDDW EDTSDGYVHYVRKINHLYEISVVTFPAYKATDVEASTRSLTGFKEIEKEKVWIKSQLSNL EEKI >gi|260196064|gb|ACQN01000003.1| GENE 216 223020 - 224354 1329 444 aa, chain - ## HITS:1 COG:L66478 KEGG:ns NR:ns ## COG: L66478 COG4695 # Protein_GI_number: 15672452 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 32 360 40 353 359 112 28.0 1e-24 MSFFRSLTAFNDTGSYIDFQDTSPRYVPITNLKNSDVFTAINVISNDIATNPIKLESDNV NHIKDKRFNQLNYLLNIKPNDFMTARDFKYALTANLLLTGNSYARILKDKVGNIVDLELL KPSQVTPFLDEDSGEIKYEIQPYGQTPFDLSANEILHIKFLSTNGYVGASPLYALADEMR MQKSGNEMLNAFFGSGINGSAILKMPGDLGPDARNALRNKWIEGNSGDSTHRLIILSGKE DYQPIEIDTNILKIINSNDYTTKQIAKAFGIPISRLGLENSHTSLPQSNLDYVQNSLDHY FSRFTSEFNVKLLSSKDSLKYHFEFDVSRLMELDTETNMKLTLDWFKAGLLSDTESRTRL GYAPADDEMAGVRTIMSNFVPIQNIRENFPNNVAVGNAYDDTGKPISTKENQKSGISNVL KGNEKDGSTESDTSSDDGEGKQND >gi|260196064|gb|ACQN01000003.1| GENE 217 224372 - 224551 171 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851370|ref|ZP_05556759.1| ## NR: gi|256851370|ref|ZP_05556759.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 59 14 72 72 99 100.0 7e-20 MRNNSIFNFILSNIHTILCLMGGLLFSVGMFLLSTPAGFIGSGLFWTAIAIYIDRTNSK >gi|260196064|gb|ACQN01000003.1| GENE 218 224529 - 226244 1734 571 aa, chain - ## HITS:1 COG:L64491 KEGG:ns NR:ns ## COG: L64491 COG4626 # Protein_GI_number: 15672451 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Lactococcus lactis # 3 562 14 582 604 216 28.0 1e-55 MKDQVTEYAKAVVSGKILAPKKVIWACNRHLKDLEKPKNDKNFPYYWDIRESEKVIAFIS SLKNPDNGKQMKLVKFQAFAVGSVFGWLRKSDSHRKFKKMFISMARKNGKTILVAGIALY ILLYQKYPVRGKQIYCAANKRDQAKVAFNYINNFLVPLRNDSPFVKRKTQMKRDEITDAK TGSFIKPLSNDKNGIQGLNTTLAIFDEQADSNDITVYDAVEKSSRMQKDPLMLLISTVSP NINGWFHEMIYQYVEQMVKGDVVDDETMVLWYEQESEDEIADTANWIKSNPILYDKDIRE TLLPTLIQDWKTAQAMGRETKAKIYNFNMWQQANENSYIKVQDWANIKVDKTPDLYGREV YIGMDLARTGDLSAVSWIVPLPEQKKFWVDSHAFVGTRGGIENKIQKDKIDYLALRRRGE VTLSNLESGNIDDQQIIDFIYNLIGEHKFSVNCICYDRYSANHIIDTFNEDGYTMVDVAQ GFATLSEPTKQFRKYVQDGGVIHGDNRLLEIAVNNAIVKEINDAVLLDKTMYRNKIDPLA ALLDAMTQAYNYDFSRDFERDSEFYEKQFHF >gi|260196064|gb|ACQN01000003.1| GENE 219 226249 - 226686 404 145 aa, chain - ## HITS:1 COG:CAC1896 KEGG:ns NR:ns ## COG: CAC1896 COG3747 # Protein_GI_number: 15895170 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Clostridium acetobutylicum # 8 138 18 150 151 68 35.0 5e-12 MHSTNFNSHKTKDEIAQRELEEKAASDFSTLTLSPPSWIDSEAQKEYRRVAPMLKKLSIT ALDRQVLIDYCIAVSTLKKAIKAVEENGVLIDGKKNPAVNVMLDMQKEIRANASSLGMTL DSRMKLVKPEPKDEIEDDPYAKFGE >gi|260196064|gb|ACQN01000003.1| GENE 220 226919 - 227179 177 86 aa, chain - ## HITS:1 COG:no KEGG:BCAH820_4388 NR:ns ## KEGG: BCAH820_4388 # Name: not_defined # Def: HNH endonuclease # Organism: B.cereus_AH820 # Pathway: not_defined # 3 78 16 101 105 63 45.0 2e-09 MNREATRNYRKFYQSKAWKELRSLKLSRNPLCERCLKNNIYSLATDVHHIKDVYNNYSYR LDYNNLQALCKPCHEKIHKLGYYPPL >gi|260196064|gb|ACQN01000003.1| GENE 221 228064 - 228321 365 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851374|ref|ZP_05556763.1| ## NR: gi|256851374|ref|ZP_05556763.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 85 1 85 85 133 100.0 4e-30 MKKLVILGGLVVVMLGALYIYLAPRVEADTEYKTVKIDKNTKIKYKKYNDDQIIIEVNTK KKVLTDIGANIDENGKSDGATIALN >gi|260196064|gb|ACQN01000003.1| GENE 222 228324 - 228491 208 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851375|ref|ZP_05556764.1| ## NR: gi|256851375|ref|ZP_05556764.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 55 1 55 55 85 100.0 1e-15 MDKLNKELDKFIKDYNVKDSKEKIIFCLERLGFYIQEKPTIAYIDIDYLKEKGIL >gi|260196064|gb|ACQN01000003.1| GENE 223 228496 - 228981 594 161 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851376|ref|ZP_05556765.1| ## NR: gi|256851376|ref|ZP_05556765.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 161 1 161 161 285 100.0 4e-76 MQKLVEEYNYLDLKNVNGFKVYKFKPKKQGGAVVNNVLKNLTGLNLKTANIEQIQEAAQE KGLYIRLVFKCASYYDLILNNLDFLDRYDDITYLVVKKSTNRSIWQFDDDDKAVQILDKL YCYDNTTLYRLKLGKWLDSHTFNVQKEVILLTKEEAENWED >gi|260196064|gb|ACQN01000003.1| GENE 224 229168 - 229440 112 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851377|ref|ZP_05556766.1| ## NR: gi|256851377|ref|ZP_05556766.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 90 4 93 93 82 98.0 6e-15 MAIDWNNLDEVREYKRKYAKKYRDKRKKEAEQGNEKAKAYFERGRKTQAWRSVKSFLKNQ ATLKQVREAREVLLEREKELKEKIKKSIDN >gi|260196064|gb|ACQN01000003.1| GENE 225 229660 - 229779 90 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLILDTLQSNYNRVNRVSVQHSGNITNYVFNEKKLKKEY >gi|260196064|gb|ACQN01000003.1| GENE 226 230535 - 230711 146 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLGLAFWSLTLRILELILAIGLAFFLVYLAFMAIIFVGTIIILACRKMASDRRNKRL >gi|260196064|gb|ACQN01000003.1| GENE 227 230864 - 231169 118 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851378|ref|ZP_05556767.1| ## NR: gi|256851378|ref|ZP_05556767.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 101 9 109 109 194 100.0 2e-48 MEAILRDYPKIDEYIKNRQNSAYYSIEDDRFIASLRWQKKCVTEVLLKTDFATKRVIDAL YFQRNPNLTLEGVADHLHISRTNLYYKRNHFLETLRKELGW >gi|260196064|gb|ACQN01000003.1| GENE 228 231243 - 231548 460 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851379|ref|ZP_05556768.1| ## NR: gi|256851379|ref|ZP_05556768.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 101 1 101 101 178 100.0 1e-43 MNFKKIDTALTDLMERKNKAYGNAYADSFNELGLIYAFVEVNNKLQRIKALTMNPDIPDN GESIFDSYVDLRNYAELAISQMIEYETVSKETLEKYGLSDI >gi|260196064|gb|ACQN01000003.1| GENE 229 231538 - 231837 274 99 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851380|ref|ZP_05556769.1| ## NR: gi|256851380|ref|ZP_05556769.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 99 1 99 99 166 100.0 4e-40 MYPEKIKKRLKKQLMEDIPEDAWNINFIFNKYDVDIRYSIDNFICFKPAIKLDFIKLAYQ TTNNPFYKIFIKLISRNKKLREMTNKNIADKLWEDKHEL >gi|260196064|gb|ACQN01000003.1| GENE 230 231861 - 232379 433 172 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851381|ref|ZP_05556770.1| ## NR: gi|256851381|ref|ZP_05556770.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 172 1 172 172 289 100.0 4e-77 MWKSDYDLTIEFNEDERIFIVFDDCDLNASVVNVIFEPNRECENSDEIIDGLNKLRKKSG IDYIDVKTTFRNFLHTDETNIQRHYEYLKSVMEDNKSYVKDELSRFLDKYGNDIHKILPD FSLNKEDWGYNLNENYYYLVDAYTLKFKPTEVELRDIEDNFITSFNWSDSDE >gi|260196064|gb|ACQN01000003.1| GENE 231 232459 - 232635 105 58 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260660805|ref|ZP_05861720.1| ## NR: gi|260660805|ref|ZP_05861720.1| predicted protein [Lactobacillus jensenii 115-3-CHN] # 1 58 1 58 58 93 100.0 4e-18 MKCKYTDVHMINDINIILDIPWEVFKTLDLECFRTFKIVNGDEVVINGNQIMMAFPLK >gi|260196064|gb|ACQN01000003.1| GENE 232 232642 - 232911 266 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851382|ref|ZP_05556771.1| ## NR: gi|256851382|ref|ZP_05556771.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 89 1 89 89 174 100.0 2e-42 MHMLHYPDSKGYTFDGVRLYTENFGLIYEAKKIDESIVIKLVSDLFKAESFEWRSPYHYT INKRPIVVREVDNGLNVWANEKFVKRIKV >gi|260196064|gb|ACQN01000003.1| GENE 233 232937 - 233323 173 128 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851383|ref|ZP_05556772.1| ## NR: gi|256851383|ref|ZP_05556772.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 128 2 129 129 239 100.0 4e-62 MSILLREICLDKETERVKEFKTWNQIDFFLGQFDGYSWLSRRSVLRSQDSVPYFIWKIDD EIIPHVFNRRAIVLNVKKAHSTHHRDRSEIIKCLNKLNKKYRSFLQIPVGDKDFDHLKDL LRLYERRR >gi|260196064|gb|ACQN01000003.1| GENE 234 233323 - 233679 411 118 aa, chain - ## HITS:1 COG:no KEGG:FI9785_823 NR:ns ## KEGG: FI9785_823 # Name: ps121 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 3 112 2 110 111 143 61.0 2e-33 MDSEHLIQQKIQLYITQNNLGCCFRANVGSVKQADGRWFSTGLPNGYPDLHGTRWIDNQS YFIEVKSPTGKIRDDQMRFHQFLMQHNVIHGIARSVDDAKMIIQGGLVGYGYPDMEIE >gi|260196064|gb|ACQN01000003.1| GENE 235 234114 - 235442 1091 442 aa, chain - ## HITS:1 COG:L109011 KEGG:ns NR:ns ## COG: L109011 COG5545 # Protein_GI_number: 15672499 # Func_class: R General function prediction only # Function: Predicted P-loop ATPase and inactivated derivatives # Organism: Lactococcus lactis # 1 376 11 383 480 247 38.0 3e-65 MVELDKKDDKKVIELKNTDKLRKLQKQPKYSYSLPFLVNEKTGIIKKNSIYNIIMILSND KLLKNTFQFNEYTEAVDVMKDIKDLNIEKGQLKDVYISLIAAYIETQGAYSNILFDDQKI RSAISVYASSHSYNPIKDYFTEALKKWDGKPRLQNLLPDFLGAEPGYLTLLITRQFLVGA IAKTFNPMTKFDMVLDLVGGQGVGKTTFLKNLAPLGYYTDQFASFSSKDDFAVMKNAVIV NDDELTASHNSSFEELKKFVTMQEFEYRKAYGHTAEKFHKKFVMARTTNERYYLKDLTGS RRFMPILADKANRKKNAVTDMPPEFVQQIWGEAMALYKSGDFSFALTPEEEVELESKRTK FNYVDAFEDKLADILESDDFRYANFITNDKLADALGLDLLKNRKAARKLQSLMLDRFKWS RKVKKIGGKTARGYARNSQTLH >gi|260196064|gb|ACQN01000003.1| GENE 236 235435 - 236220 645 261 aa, chain - ## HITS:1 COG:no KEGG:FI9785_817 NR:ns ## KEGG: FI9785_817 # Name: ps115 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 3 258 4 263 266 303 59.0 3e-81 MQNLINYAKSYAEHGFSVIPIGNDKRPLIKFANKPALTVDEIEAIWKRYPFAKIALKTEQ FFVVDVDRHHSEADGLESIKDLNHDEWFKDTLTEITAHGGYHFYFRKPKNEEITQNIGWL PGVDIKAHVNNYVVCAPSAGYKWLNHKPMKDAPEELIKAINKNKKQENLSLDQIDNIRFS GKSQTAILFEQIVDGLGETGGRNNALAAFMGGLLYRNVDPEKAVKLAILANDATEDKLSS DELIRTVQSMIDKDIRRREGG >gi|260196064|gb|ACQN01000003.1| GENE 237 236223 - 236795 796 190 aa, chain - ## HITS:1 COG:no KEGG:FI9785_815 NR:ns ## KEGG: FI9785_815 # Name: ps113 # Def: putative single-stranded DNA-binding protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 11 190 13 193 195 132 44.0 8e-30 MSLKDVFASLKDFDPKKDKVGGNSALPAGKYYVSLSGVTHQAKNDREFVMFTFEVLDGDF AGRKENVFPSLELVTSTGKPMPDFVLERSIKTIMKIASVIGFEFDKRIFAGLEDDVTNVY EEIQQAFSSHLGKTLTLEIIESRNKKDPDHPYRNYDFYEAEQPTTPEAIEDPFADNPGSE EEIDESKIPF >gi|260196064|gb|ACQN01000003.1| GENE 238 236820 - 237524 645 234 aa, chain - ## HITS:1 COG:no KEGG:FI9785_814 NR:ns ## KEGG: FI9785_814 # Name: ps112 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 232 1 238 255 287 60.0 2e-76 MGILPKDEVIQPKSEPHNFFIYGAPLAGKSFFASHFPHPLILNTDGNALQQSAPSIQIRN IRSGNSNKPLKQSAIEQLTDIITELETTDHTYKTLVVDVIDDICVMMEQAICLEAGVTSL ADLGYGRGYAMFNSALQQFVVDLKALPMDIIFISRELEESEMGSSVAPTLKPSLKKKYYN IVAGNCDVVIHLRKLGPNTYLRKVDDKRMNYKPENISNERVLQLLESCRGMFSK >gi|260196064|gb|ACQN01000003.1| GENE 239 237524 - 238660 885 378 aa, chain - ## HITS:1 COG:lin2589 KEGG:ns NR:ns ## COG: lin2589 COG1061 # Protein_GI_number: 16801651 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Listeria innocua # 1 374 59 414 418 254 38.0 2e-67 MGMVQTLYRKVNRLPEPQLILIDEAHHAAAKTYQTILNAFPNAFVLLFTATPIRTGKKQL DQVADDIIVGESIKNLISQGYLANFKYFARKDVDTKKLKKSSTGDFTNASMEEAVSTKIY GHVLDNYLRIAKGKQAVVFTYSVESAKRIAKQFNSAGITAEELDGNTDTATRESIVNDFR NKKITILVNVNLFTEGVDLPDVDCVIMTRPTASLALYLQFSMRCLNPRKGKTAIIIDHVG NYERFGLPNSERDWRTAIVTKDKKTKKKQQNDSLSIVQCDFCFRVFERSDVKNGTCPGCG NPIKVRKTPEVTNDQLQEVIQDRKNLVEKIISDNTKLAIAGKKLSELHTYKELKAYADLH GYRPGWIFYQLKNRKRGH >gi|260196064|gb|ACQN01000003.1| GENE 240 238879 - 239346 187 155 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851390|ref|ZP_05556779.1| ## NR: gi|256851390|ref|ZP_05556779.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 155 1 155 155 290 100.0 2e-77 MAKRKITYKELANIVNKFHHLTSFYHRFIVINNEFLYRHYDDEDIKITIDSNWNMNDCDL YILEALAKSNFEFYNFYDSNCWPKPELFEFFKDIEFNGQKFVKDGRFLRLENGPDVMLTP DFRITKSTRLTWPDKNELELILWKKFVCLNFEIIN >gi|260196064|gb|ACQN01000003.1| GENE 241 239540 - 239803 204 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851392|ref|ZP_05556781.1| ## NR: gi|256851392|ref|ZP_05556781.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 87 1 87 87 152 100.0 6e-36 MDKEILKLCTDYKKQLIDDALKQKTYGQALKYLKNLHYDFDGNFRATLPEQILGLLNSVI DEAIIEVRMKAYKQSIDGDDESSKPKH >gi|260196064|gb|ACQN01000003.1| GENE 242 239796 - 240044 334 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851393|ref|ZP_05556782.1| ## NR: gi|256851393|ref|ZP_05556782.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 82 3 84 84 122 100.0 5e-27 MYEVYFPDSDDYTYVGYQGDVPDFTSLILNRFIDIGEYNFLLEFSFPSISDFIQFVWDNS MDLEGAFKDLAEEVYEVVEVNG >gi|260196064|gb|ACQN01000003.1| GENE 243 240446 - 240655 303 69 aa, chain - ## HITS:1 COG:no KEGG:LJ1452b NR:ns ## KEGG: LJ1452b # Name: not_defined # Def: Lj928 prophage protein # Organism: L.johnsonii # Pathway: not_defined # 1 68 1 68 69 64 45.0 1e-09 MQIMISEEAVKKAVQQEYFNKREASNYLGISMQTFKTWREKFKIPYQSIDGMILFARKDL ETFMNEHKR >gi|260196064|gb|ACQN01000003.1| GENE 244 240679 - 241047 417 122 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851395|ref|ZP_05556784.1| ## NR: gi|256851395|ref|ZP_05556784.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 122 1 122 122 214 100.0 1e-54 MNIEKEYYCDNCGKKLELYGQVYTHIGNEQLYCSPTCLVNYECSAFRTLDEAKKYLVQRG YKNAMNEKIPCTECEKELKANQPVFKDLDDYIYCSPECLLLYSYSYKETLNDVLTEIDKY GI >gi|260196064|gb|ACQN01000003.1| GENE 245 241050 - 241223 223 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851396|ref|ZP_05556785.1| ## NR: gi|256851396|ref|ZP_05556785.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 57 1 57 57 98 100.0 1e-19 MTKENYRCTWCDGELDEDEGIFMDNKHRLYCSKDCLLELNSEIFLDLEDAINASKEG >gi|260196064|gb|ACQN01000003.1| GENE 246 241235 - 241468 357 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851397|ref|ZP_05556786.1| ## NR: gi|256851397|ref|ZP_05556786.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 77 1 77 77 117 100.0 3e-25 MENIKTKIIDRGYIYKKYGRDKQGDPKAKLDEAINDFIKDKKVIDIKYQTNMTSIVWDGV DDDRYLVTALVIYQSKD >gi|260196064|gb|ACQN01000003.1| GENE 247 241577 - 241762 173 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851399|ref|ZP_05556788.1| ## NR: gi|256851399|ref|ZP_05556788.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 61 1 61 61 101 100.0 1e-20 MIKTVEIEFEKDALNDDFKEFITALLKFLEGNTVLSSFYDDDKEQLEIQYLERTSNYGCV R >gi|260196064|gb|ACQN01000003.1| GENE 248 241763 - 242041 167 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851400|ref|ZP_05556789.1| ## NR: gi|256851400|ref|ZP_05556789.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 92 1 92 92 162 100.0 5e-39 MKRLTLEQEIKIIKQAQGLKDLDVWQFILATSAFIRVFEAELNLDRRAIAANIDNLTFLS EKDWQKWLAKTGCSIPVQDLYKEFIREAKKGK >gi|260196064|gb|ACQN01000003.1| GENE 249 242059 - 242328 332 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851401|ref|ZP_05556790.1| ## NR: gi|256851401|ref|ZP_05556790.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 89 2 90 90 176 100.0 6e-43 MTEKYSVYRVVFNGKSGGCYDGYIISQNPQETMRILVQNHTFLLEFIPLWKAILFKKPRG KWSYLHDVSLEYLRETPFKVERYSDYEEQ >gi|260196064|gb|ACQN01000003.1| GENE 250 242343 - 242600 217 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851402|ref|ZP_05556791.1| ## NR: gi|256851402|ref|ZP_05556791.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 85 1 85 85 147 100.0 3e-34 MDKYKELIKTNLKNALVALDENEAFKKLNDAGRFKNDLPTKITININPDNTIEVEGASVT PFNLKHSTLKFNIDGQSSCSYSLHD >gi|260196064|gb|ACQN01000003.1| GENE 251 242600 - 243376 980 258 aa, chain - ## HITS:1 COG:lin0080_1 KEGG:ns NR:ns ## COG: lin0080_1 COG3617 # Protein_GI_number: 16799158 # Func_class: K Transcription # Function: Prophage antirepressor # Organism: Listeria innocua # 1 130 1 128 129 160 60.0 2e-39 MTDLQIFNFNGTDIRTLTIDNEPYFVGKDVAKVLGYKNSRDTLMKHVDEEDKKDGVAIRD SIGRNQSAVAINESGLYSLILSSKLPTAKKFKHWVTSEVLPAIRKHGGYLTDEKIEEALY NPDTLIKLATQLKEEREGRLIAEQQVAELKPKASYLDEILANKELITVSVIAKDYGMSAM QFNKLLHNLKVQFKQGKSWLLYSNYQSLGWTSSSTKQVTKKDGSTMNMMNTKWTQKGRLG LYELLKRHDILPMIERAA >gi|260196064|gb|ACQN01000003.1| GENE 252 243793 - 243984 286 63 aa, chain - ## HITS:1 COG:no KEGG:LSL_0744 NR:ns ## KEGG: LSL_0744 # Name: not_defined # Def: phage antirepressor # Organism: L.salivarius # Pathway: not_defined # 1 63 54 116 116 68 50.0 5e-11 MPEMEPGRNKIKQFLKDNGISIAELAVSYGITRQELSQVLSGYRSRPKDNKLILKIISDL GIK >gi|260196064|gb|ACQN01000003.1| GENE 253 244274 - 244600 293 108 aa, chain + ## HITS:1 COG:no KEGG:JDM1_0962 NR:ns ## KEGG: JDM1_0962 # Name: not_defined # Def: transcription regulator # Organism: L.plantarum_JDM1 # Pathway: not_defined # 1 99 1 103 108 83 42.0 2e-15 MTPFEKIKKYCKEHGTSIQELAEKSGISAGTIYNWKHKTPSTTSLEKMASVMNVSVSSLF TDADESSNNEVDLNNNANLYFYDGKPIPKEDMDYVRGLLKHLGEARNN >gi|260196064|gb|ACQN01000003.1| GENE 254 244554 - 244970 406 138 aa, chain + ## HITS:1 COG:no KEGG:FI9785_804 NR:ns ## KEGG: FI9785_804 # Name: ps104 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 14 132 6 127 134 80 36.0 2e-14 MSVDYLNILAKQETINYLIDFATKNNIAVSLQHELPPDYPSVSSVEDRAIYINSNAPNAP LQFAHELGHILNQDSGVLYFTALSAIKTEAEATKTGLSILLDYYLQENDIDDFNIDNFIK LYQVPTQFVDYIYKLINK >gi|260196064|gb|ACQN01000003.1| GENE 255 245104 - 246231 803 375 aa, chain + ## HITS:1 COG:L55605 KEGG:ns NR:ns ## COG: L55605 COG0582 # Protein_GI_number: 15673415 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 9 358 3 341 359 151 31.0 2e-36 MPKRKNKAIKEYTLKNGEKRYMFKIFLGRNINRIKKETTRRGFKSFAEAEEAYNHLNIEN VNDFVKQKQITINQMYEIWFARYRTTVKESTANKTAINYRVHIKPFFGNAYMDKISVRDV QLWADKLATKLVKFNDPIFILRSFYEYAIRMNYVSINPVGSIIMPVKTSRPRRNVEDNVY SRKELELFLQVAKEYNLRAYTYFKLLASTGLRKSEALALTWSDIDFINGVIDVNKTLAVG LDNKVQVQPPKSKSSIRQVPISANLANVLNEYKNSEKILSAKVFHTYTGKYLSLSKPMKW LEAIYNKAPKDLKHITVHGFRHTFATLLISETNVKPKTVQMLLGHSNIQMTLDIYTHINN KNKKEAVNVLNELDI >gi|260196064|gb|ACQN01000003.1| GENE 256 246758 - 247945 1495 395 aa, chain - ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 392 1 394 395 420 54.0 1e-117 MKKVLAINSGSSSFKYKLFGLPDENVLAEGLGDRIGIQGSTFEMKLENGQKYSEEVALPD QETAVKVLLDWLKKYDVVKDLTEIVGVGHRIVSGGEEFTDSAIIDEKNLQKIFDLTDYAP LHNPAEGRGIKAFMNLLPGVPQVAVFDTSFHQTMDEVHYLYSVPFEYYEKYKARKYGAHG TSVRYVANRTAELLHRDLSDLKMIICHLGSGASITAVKNGKSFDTSMGFSPLAGVTMGTR SGDVDTSLIQFIMDKEGINDIDDMIDILNHKSGLLGISGISSDMRDLENSKDKRAKLARD IFINRVIRYAGSYAVEMGGIDALVFTAGIGEHDAYICEGIMKPFECMGLDPDFEANKTNG EKIISKDGSKIAALIVPTDEELMIERDVVRLAHLD >gi|260196064|gb|ACQN01000003.1| GENE 257 247978 - 248976 1163 332 aa, chain - ## HITS:1 COG:BS_ytxK KEGG:ns NR:ns ## COG: BS_ytxK COG0827 # Protein_GI_number: 16080000 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Bacillus subtilis # 78 332 79 329 329 174 37.0 2e-43 MKNIEAIFAQFLDVVQILQKNLNVPFAGAVTETFDNLENGKIKVEMGAPDKETVALLSKK YQELNYDKLPSTQKYMVFTLLTLKAMKEDGRNYSQMPTPPVLATVVAMVWDKLITKTELA VVDPAIGTGSLLYTVIDQLVQSHHSQNKYRLAGIDNDESMLDLADVGAHLSNYKIDLYCQ DALENWLIEKPDVIVSDLPVGYYPIDENAKNFATQAKEGHSLAHELLVEQTIKNLAPAGY AFLLVPNSLLGGKLGAEFMPWLAKKVYLQAVVQLPNDLFQNPLNQKSLLVFQNHGEGAQS RDVLLAKLGSLREEKSLVDFNQKLNEWYTKKR >gi|260196064|gb|ACQN01000003.1| GENE 258 249041 - 249259 77 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MERVSGFLILLVKTSQLMMNLKKMIKSKITGSILISTILFLLAVLLFLQYYQFTFVKTVE NNQLLVKYFESK >gi|260196064|gb|ACQN01000003.1| GENE 259 249177 - 249680 375 167 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1271 NR:ns ## KEGG: LGAS_1271 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 7 148 1 149 172 90 30.0 3e-17 MGLNMKIKKIKGFLLVEAIISLVITLFCLIMLTNLLSLFKQYRQAEHYGNELVLSYVQLN NFIESSNYIEIDQKGSNSKKVIFKREEASKTTNYVLEYYNSSMLRLTASQGGHIPLLMNV KQSSFDIDNQKLKVRIVEQKNGESEWFFDLTSKNKPINDELEKNDKK >gi|260196064|gb|ACQN01000003.1| GENE 260 249658 - 249870 167 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851412|ref|ZP_05556801.1| ## NR: gi|256851412|ref|ZP_05556801.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 70 1 70 70 123 100.0 4e-27 MKQVKGFLLIEAAISLIILLFCLNLFVFCLIETRKIEANSQIRSDRAYADYVLRKYHLNK IKVHGIEYEN >gi|260196064|gb|ACQN01000003.1| GENE 261 249857 - 250288 287 143 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1272 NR:ns ## KEGG: LGAS_1272 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 4 141 1 137 138 82 31.0 6e-15 MVKLLRNRVRAFTLFETVITLAIVTAILSIGWLNFSVIKEKMLIDSASMQVKVILNQALR RASITNKLYLIDYYESDNLLIVKDQDGKVEKYSLPEGVKIYNLAKTNIEQTGYIAPKTIT LRTKKFKKELRIQLKWGKINETS >gi|260196064|gb|ACQN01000003.1| GENE 262 250266 - 250595 447 109 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1273 NR:ns ## KEGG: LGAS_1273 # Name: not_defined # Def: competence protein ComGC # Organism: L.gasseri # Pathway: not_defined # 1 97 32 125 129 76 49.0 2e-13 MKKFKELVKKLRKQTVKGFTLIEMVIVIAIIAILMILVVPNLTNQKNNAETKTDEAFQTT LQAQVTLAEEDGKKITSWDQLEQAKYISEKQAKRAQEKFVISNGEVVKK >gi|260196064|gb|ACQN01000003.1| GENE 263 250606 - 251529 876 307 aa, chain - ## HITS:1 COG:L0314 KEGG:ns NR:ns ## COG: L0314 COG1459 # Protein_GI_number: 15674104 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Lactococcus lactis # 3 306 48 355 357 94 25.0 3e-19 MSLKNGLSLAESLQVMPALWSKKQRLLRKLTYLMEQGVNFSQILRQMGFGKTIASQVDLA MMQGNLNECLNQLVIINRLKEEQLKKLKAELSYPITLFVLMIFMLLFMQNFLNGQLGQED GTANLVFAILIVVASVLSAGVTRIVILLKRQDYKALKALLRYPIVGKITQLYVFYMISSE FGMMLGAGFSFPEICKLFTNQEDGSLQEQLGRKMLKQFEAGKSIGDIIRGEAFLPDNLLL FIETGAERKELGLKCTILANGFFRDLTQGLERLIVNVQPICFIFIGICIIGMYLKMLMPM YALMQSM >gi|260196064|gb|ACQN01000003.1| GENE 264 251573 - 252556 828 327 aa, chain - ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 3 317 2 301 313 203 38.0 4e-52 MEVKHWAEDLIKSAKDMNTSDIFITGKQDFYEVNFRTSKGLIRREKLNLQFGLEVINYFK FIAQMDVSEHRRPQVGSYIFKNNKQSQVVFLRFSVLGEFSGKESLVIRLINSIQNNRYFF IEQVDLLTAAAIKRGLILTSGPTGSGKTSTMYYLAKKLAHQKVVMTIEDPVEVFEPEFLQ TQINLEAGIDYESLLKAALRQRPDILIIGEIRDKVTARLAVDAALSGHLVLATVHARSTL QTIARLKGLGIDSVELANCLNCVSYQRLIQTIDGEIACLLDIASGETLHKEINKSKTGDF INWRENLAELLKEERISGDSFTSFQEG >gi|260196064|gb|ACQN01000003.1| GENE 265 252656 - 254269 1855 537 aa, chain - ## HITS:1 COG:ycaM KEGG:ns NR:ns ## COG: ycaM COG0531 # Protein_GI_number: 16128866 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 8 473 71 536 540 352 38.0 9e-97 MDDLIKDKKYISWPTLTLMAFVTVIGLDDIMYNFQNQGMTVMTSWVLMLFLYVIPYALMV GQLGSIFNKGGGGLSSWVRGTDGEFLGYFTAWTYWAASIPYVVDSANEIIVDVGWAFTGS EKFQDSISNAQFTLLTFLMFIIFIFIERKFANSMEVLSTIGGAMMFIMTMLFVFLAFVGW AKSGGHMATQPFTWKTMIPKFDLKYWTTVGMLIYAVNGSELVAPYVTRMKKPKTDFPKAM IALAVMTAFLTIFGSFALGIYFDAYHLPNDLKMNGSYYVFEAVGQQFGLGHTLLYVYAWT SVFYNAALLAVLLDAMTRMLISDTGDKYMPEFLRKTTKDGLPINGYILTVSLSAFIMLLG VFLPDMNDIFNWLLNLNGIISPGVTCWIFYSFMRVRKDSKKYPSEYVYIKNDKLAYLAGL ALLVVTAVATVLGVAPQDVKQFSDIWWYELIINIIAVVVLIGLGAILPGIRRREVEYGIA FSKKQWIIMIALIIGSIILDVYLGGTKIALRGLYIFIEACIALLVCWLIGREKPIEK >gi|260196064|gb|ACQN01000003.1| GENE 266 254490 - 255368 1146 292 aa, chain - ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 7 287 4 291 302 114 26.0 2e-25 MKIKKIFTIMALALASLTIVTACSQKTSEKSSGIKIVTSTNVYADIAKNIVGKYGNSEAI ISNGDIDPHDFEPTTKSATTINSADIVIANGMGYDNWMSKLAKSNGKTAVKVGEDIMKLK SSDNPHIWYNLDMPEEYVNYLVKKLSKLDSKHASYFKKNAENYLAQISEIKAVAKTVDGK NSKPVYVSEPVFDYALEAAGFKIGDKDFEEAIENETDPSAKIIEKMNKAISGKEIAFFVN NTQASSSTVKALVKKCKAAGVPIIEVRETMPNGVSYLKWMTQNYEKLKDVSK >gi|260196064|gb|ACQN01000003.1| GENE 267 255446 - 255967 568 173 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0608 NR:ns ## KEGG: LBUL_0608 # Name: not_defined # Def: integral membrane protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 159 1 159 175 154 54.0 2e-36 MQKFKFSKREKLSLVLALIIFISLFISSSMTYHEQKMSSSTIKTYFGFLDPLLSHISINY GGQIHSASKDGLTSFTQFFVRKLAHFSSYFLLGLGLFAGLKRFFLNKVYAFIFIWPITIS LAVFDEYHQYLTGDRTPSVHDVVLDSIGALCGILLFLIYRLFIEKSAKKAIKN >gi|260196064|gb|ACQN01000003.1| GENE 268 256044 - 256772 1194 242 aa, chain + ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 239 1 239 241 285 62.0 5e-77 MSGHSKWHNIQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPSGNPALRLVMDKARAAN MPKDNIQRAIKKAEGGSEEHYDEITYEGYAPGGVAVLVEALTDNKNRTATSVRTAFTRNG GSLGATGSVAYMFDRKGYIVIDRSTTDADEDQMLMDVMDAGADDLQTSDDAYEIYTDAKE FTGVRDALEKAGYKLADAELTMIPQNTTPVPADKKEQFAHLIDALEDDDDVSNVYTAADD ED Prediction of potential genes in microbial genomes Time: Wed May 25 13:45:55 2011 Seq name: gi|260196063|gb|ACQN01000004.1| Lactobacillus jensenii 115-3-CHN cont1.4, whole genome shotgun sequence Length of sequence - 76481 bp Number of predicted genes - 72, with homology - 71 Number of transcription units - 26, operones - 16 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 40 - 507 582 ## COG0394 Protein-tyrosine-phosphatase 2 1 Op 2 . - CDS 509 - 1216 644 ## LCRIS_00726 hypothetical protein 3 1 Op 3 11/0.000 - CDS 1217 - 1552 435 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 4 1 Op 4 . - CDS 1549 - 1932 220 ## COG0239 Integral membrane protein possibly involved in chromosome condensation - Prom 1953 - 2012 3.2 - Term 1975 - 2027 7.5 5 2 Op 1 2/0.167 - CDS 2036 - 3943 2029 ## COG2217 Cation transport ATPase 6 2 Op 2 1/0.333 - CDS 3943 - 4311 357 ## COG4633 Uncharacterized protein conserved in bacteria 7 2 Op 3 . - CDS 4326 - 4799 464 ## COG3682 Predicted transcriptional regulator 8 2 Op 4 4/0.000 - CDS 4847 - 5668 869 ## COG0561 Predicted hydrolases of the HAD superfamily 9 2 Op 5 . - CDS 5689 - 6498 966 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 6536 - 6595 10.5 - Term 6545 - 6573 -1.0 10 3 Op 1 6/0.000 - CDS 6598 - 7950 1848 ## COG1109 Phosphomannomutase 11 3 Op 2 7/0.000 - CDS 7969 - 8937 1271 ## COG4856 Uncharacterized protein conserved in bacteria 12 3 Op 3 . - CDS 8934 - 9776 771 ## COG1624 Uncharacterized conserved protein 13 3 Op 4 25/0.000 - CDS 9813 - 10886 950 ## COG0687 Spermidine/putrescine-binding periplasmic protein 14 3 Op 5 36/0.000 - CDS 10883 - 11692 979 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 15 3 Op 6 30/0.000 - CDS 11689 - 12501 684 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 16 3 Op 7 3/0.167 - CDS 12491 - 13591 1298 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 17 3 Op 8 . - CDS 13588 - 14367 1094 ## COG0812 UDP-N-acetylmuramate dehydrogenase - Prom 14588 - 14647 6.3 + Prom 14521 - 14580 7.9 18 4 Tu 1 . + CDS 14604 - 15137 589 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 15146 - 15190 6.2 - Term 15129 - 15182 11.6 19 5 Op 1 . - CDS 15183 - 15659 630 ## COG0802 Predicted ATPase or kinase 20 5 Op 2 . - CDS 15659 - 16636 1187 ## COG0280 Phosphotransacetylase 21 5 Op 3 . - CDS 16648 - 17337 557 ## COG0692 Uracil DNA glycosylase - Prom 17391 - 17450 6.0 + Prom 17327 - 17386 4.0 22 6 Tu 1 . + CDS 17430 - 17945 523 ## lhv_0746 hypothetical protein - Term 17722 - 17753 1.0 23 7 Op 1 10/0.000 - CDS 17949 - 18404 501 ## COG0691 tmRNA-binding protein 24 7 Op 2 . - CDS 18417 - 20741 1375 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 - Term 20758 - 20795 4.1 25 7 Op 3 . - CDS 20802 - 21020 288 ## LCRIS_00448 preprotein translocase - Prom 21069 - 21128 6.7 - Term 21113 - 21166 11.4 26 8 Op 1 . - CDS 21180 - 22478 2232 ## COG0148 Enolase 27 8 Op 2 13/0.000 - CDS 22538 - 23293 892 ## COG0149 Triosephosphate isomerase 28 8 Op 3 26/0.000 - CDS 23308 - 24519 1530 ## COG0126 3-phosphoglycerate kinase - Term 24540 - 24583 9.9 29 9 Op 1 5/0.000 - CDS 24625 - 25641 1257 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 30 9 Op 2 . - CDS 25699 - 26730 841 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain + TRNA 26973 - 27044 42.4 # Arg CCG 0 0 31 10 Tu 1 . - CDS 27083 - 27409 352 ## PROTEIN SUPPORTED gi|227521446|ref|ZP_03951495.1| 30S ribosomal protein S9 - Prom 27445 - 27504 3.6 - Term 27476 - 27505 1.4 32 11 Tu 1 . - CDS 27510 - 29105 1922 ## COG0531 Amino acid transporters - Prom 29283 - 29342 8.9 + Prom 29091 - 29150 6.5 33 12 Op 1 . + CDS 29274 - 30698 961 ## COG0531 Amino acid transporters + Term 30705 - 30732 0.1 34 12 Op 2 . + CDS 30786 - 31253 426 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 31263 - 31305 6.1 + Prom 31264 - 31323 2.2 35 12 Op 3 . + CDS 31347 - 31928 759 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Term 31946 - 31996 7.0 - Term 31941 - 31975 6.0 36 13 Tu 1 . - CDS 31980 - 33173 1050 ## Ldb1448 putative permease - Prom 33199 - 33258 9.4 - Term 33254 - 33298 7.6 37 14 Op 1 . - CDS 33322 - 34314 1190 ## COG1052 Lactate dehydrogenase and related dehydrogenases 38 14 Op 2 . - CDS 34380 - 35594 794 ## gi|256851458|ref|ZP_05556847.1| predicted protein - Prom 35645 - 35704 6.1 - Term 35694 - 35732 5.1 39 15 Op 1 12/0.000 - CDS 35735 - 36673 1177 ## COG1481 Uncharacterized protein conserved in bacteria 40 15 Op 2 12/0.000 - CDS 36666 - 37703 1024 ## COG0391 Uncharacterized conserved protein 41 15 Op 3 . - CDS 37713 - 38588 951 ## COG1660 Predicted P-loop-containing kinase - Prom 38624 - 38683 7.8 - Term 38627 - 38677 5.4 42 16 Op 1 7/0.000 - CDS 38685 - 41525 3095 ## COG0178 Excinuclease ATPase subunit 43 16 Op 2 . - CDS 41512 - 43557 1917 ## COG0556 Helicase subunit of the DNA excision repair complex - Prom 43590 - 43649 5.4 - Term 43564 - 43604 -0.8 44 16 Op 3 1/0.333 - CDS 43655 - 45379 2062 ## COG1109 Phosphomannomutase - Prom 45428 - 45487 7.1 - Term 45465 - 45493 -1.0 45 17 Tu 1 . - CDS 45505 - 46431 573 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 46 18 Op 1 . - CDS 46501 - 47523 1212 ## COG0240 Glycerol-3-phosphate dehydrogenase 47 18 Op 2 10/0.000 - CDS 47526 - 48290 769 ## COG0682 Prolipoprotein diacylglyceryltransferase - Prom 48318 - 48377 2.6 48 18 Op 3 . - CDS 48379 - 49320 1176 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 49 18 Op 4 . - CDS 49332 - 49637 369 ## gi|238854883|ref|ZP_04645213.1| hypothetical protein LACJE0001_0851 50 18 Op 5 6/0.000 - CDS 49650 - 50648 1266 ## COG1186 Protein chain release factor B - Prom 50710 - 50769 3.8 - Term 50779 - 50810 2.5 51 18 Op 6 7/0.000 - CDS 50823 - 53225 2990 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 53265 - 53324 11.9 - Term 53303 - 53343 7.1 52 19 Op 1 6/0.000 - CDS 53364 - 53927 791 ## PROTEIN SUPPORTED gi|116629960|ref|YP_815132.1| ribosome-associated protein Y 53 19 Op 2 6/0.000 - CDS 53989 - 54666 338 ## COG1040 Predicted amidophosphoribosyltransferases 54 19 Op 3 . - CDS 54663 - 55943 736 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) - Prom 56002 - 56061 8.1 + Prom 55839 - 55898 4.8 55 20 Tu 1 . + CDS 55991 - 56653 735 ## COG1739 Uncharacterized conserved protein + Term 56659 - 56687 2.3 - Term 56636 - 56687 12.0 56 21 Tu 1 . - CDS 56691 - 57860 1232 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 57888 - 57947 7.6 - Term 57915 - 57964 8.5 57 22 Op 1 4/0.000 - CDS 57966 - 59597 2200 ## COG1418 Predicted HD superfamily hydrolase - Prom 59631 - 59690 10.1 - Term 59665 - 59701 5.0 58 22 Op 2 1/0.333 - CDS 59721 - 60803 1134 ## COG0468 RecA/RadA recombinase - Prom 60910 - 60969 8.6 59 23 Op 1 5/0.000 - CDS 60980 - 61543 278 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 60 23 Op 2 1/0.333 - CDS 61551 - 62615 1337 ## COG1426 Uncharacterized protein conserved in bacteria 61 23 Op 3 4/0.000 - CDS 62668 - 63396 726 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 62 23 Op 4 14/0.000 - CDS 63407 - 64642 1063 ## COG0612 Predicted Zn-dependent peptidases 63 23 Op 5 . - CDS 64639 - 65850 1212 ## COG0612 Predicted Zn-dependent peptidases 64 23 Op 6 . - CDS 65840 - 68227 2147 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 65 23 Op 7 . - CDS 68247 - 68642 510 ## COG4835 Uncharacterized protein conserved in bacteria 66 23 Op 8 . - CDS 68644 - 69201 763 ## COG0219 Predicted rRNA methylase (SpoU class) 67 23 Op 9 . - CDS 69194 - 70399 1205 ## COG0628 Predicted permease - Prom 70419 - 70478 5.4 - Term 70435 - 70470 3.5 68 24 Tu 1 . - CDS 70480 - 73224 2689 ## COG0474 Cation transport ATPase - Prom 73453 - 73512 7.8 + Prom 73242 - 73301 6.8 69 25 Op 1 . + CDS 73330 - 74352 1083 ## COG2706 3-carboxymuconate cyclase 70 25 Op 2 . + CDS 74363 - 75193 931 ## COG1968 Uncharacterized bacitracin resistance protein 71 25 Op 3 . + CDS 75207 - 75398 88 ## + Term 75399 - 75446 10.0 - Term 75435 - 75470 4.4 72 26 Tu 1 . - CDS 75489 - 76481 1062 ## LCRIS_01123 mucus-binding protein Predicted protein(s) >gi|260196063|gb|ACQN01000004.1| GENE 1 40 - 507 582 155 aa, chain - ## HITS:1 COG:L67624 KEGG:ns NR:ns ## COG: L67624 COG0394 # Protein_GI_number: 15674184 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Lactococcus lactis # 1 152 1 144 145 108 38.0 5e-24 MKKVLFVCHGNICRSPMAEFIARDLAKKAGLSDVEFASKATTRDEINASGIGHDMDRRAK SKLDEKGIPYTYHEASQVTREDYQKYDYLFCMDEENFLDLNRITGGDPEGKEKKLLTLLG SHKDIDDPWFTGDFETSYRKIKQACEVLIENLKNE >gi|260196063|gb|ACQN01000004.1| GENE 2 509 - 1216 644 235 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00726 NR:ns ## KEGG: LCRIS_00726 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 226 1 229 238 115 31.0 1e-24 MRKIIYLVTKIIVSLAFAFSLLLLLTSSINMKSNNNRLYAKQLITEVADDSGYGNLSSLF ASSGLEDEMLNHLPKKTEVSITPLEVYNLSSTYEKKGKFSSNDLKLPAKTSGEKFISKYI AAGINAGLKRNNEDVKNAMNLYQLVYYALLLCFVISIILVLLGKRFAGLTAILSSVGMLV GLLFASEKATATLDEILYSGMKVTISPNFLTAVIIVVIASIVWEVVCHNYRKTLI >gi|260196063|gb|ACQN01000004.1| GENE 3 1217 - 1552 435 111 aa, chain - ## HITS:1 COG:lin2187 KEGG:ns NR:ns ## COG: lin2187 COG0239 # Protein_GI_number: 16801252 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 2 108 6 117 118 59 41.0 1e-09 MILAGLGAALGAIFRYFLTVTIKPNHLWPKTTFFINMTGAFCLGFLFALGVDKNVYTFLG IGILGGYTTFSTLNKELVTLRKTKIGLLYAVSSYLLGLLLVYIGFYLGKMM >gi|260196063|gb|ACQN01000004.1| GENE 4 1549 - 1932 220 127 aa, chain - ## HITS:1 COG:lin2188 KEGG:ns NR:ns ## COG: lin2188 COG0239 # Protein_GI_number: 16801253 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 7 124 3 124 129 77 40.0 5e-15 MNKLRVYLSVAAFGFLGGICRYFLSGIYQAIGTVICNLLGCFLLSCLTYFVIESQKLPEW LNTGLGTGFIGAFTTFSSFELDSLKFINANQSVAAVSYFLISIIFGFLFALLGMKVGILL GKRGINK >gi|260196063|gb|ACQN01000004.1| GENE 5 2036 - 3943 2029 635 aa, chain - ## HITS:1 COG:SP0729 KEGG:ns NR:ns ## COG: SP0729 COG2217 # Protein_GI_number: 15900626 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 3 635 18 660 660 629 53.0 1e-180 MKMSVRKKVIITLILALPLLFQMVLMPFHIMFPYYNELALILTTLILVLAAKDYYISAWA AFKKGQANMNTLVTIGTLVAYFYSIYAMTLGHEVYFESAAVIILFVLIGDSLEEGMRKRA SGALKGLLKLQAKEAILLKNGQEIKIPVEQIKIGDTLVAKPAMKFACDGVVVKGSSHVDE SMITGESLPVKKTVGDNIVGATINYDGVINYRVTKLGQDTLLNQIVEFVKKAQASKAPIQ RLTDKFSQFFVPIVLIIAIITFEVWYVIFSAPVDRSLIFAVNVLVIACPCALGLAIPTAL MVGTNLSAKHGILIKNGQALEEINQISTIVFDKTGTITKGEPVVTDIVGDVNRVLTLAKN LEQNSEHPLAKAFLNEARKYKLPSYEVSNFQVHKGQGISGIINGQEIFIGNEKMATDLSQ KLLDAAKKLESQAKTCAYVGIAGKAIGVVAMQDIPRDNAAFVITELKKMGKKTVILTGDN QNVAREIGKNVGVNQVISEVLPNEKAKEVKKLQKEAKVAFVGDGINDAPALSTADVGVAM GSGTDIAIESGDIVLMQDNLKNLLNALQISKKIFNRIKINLFWAFIYNVIGIPIAAGIFA KQGLVLSPELAGLAMAFSSISVVASSLLLNRTKFN >gi|260196063|gb|ACQN01000004.1| GENE 6 3943 - 4311 357 122 aa, chain - ## HITS:1 COG:SP0728 KEGG:ns NR:ns ## COG: SP0728 COG4633 # Protein_GI_number: 15900625 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 122 2 123 123 95 32.0 1e-20 MRSFSILIAVFIIGFIIWWFFIRKVKDTELAMADQNKQKAQIVIQGGYSPSTLVLQKGIP AEVEFLQKDATACLAEVRSAELALDKKIAPGEKVTIKVPTDQAGEYNYSCGMNMFHGKVV VK >gi|260196063|gb|ACQN01000004.1| GENE 7 4326 - 4799 464 157 aa, chain - ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 21 149 4 132 144 98 37.0 4e-21 MLTNVNDGDEIMTEKVMKMNISDAEWEVMRIIWTLDEVKSSEIINQLSERMSWTESTIKT LIRRLVNKGLVKTRKKGRAYIYSAMVSENEMMYQVAKDMFAHMCDMHKGSLLIRLIKEIP LSKSAINEIQAELNQMEQSAPESVPCDCLHNNQKHHC >gi|260196063|gb|ACQN01000004.1| GENE 8 4847 - 5668 869 273 aa, chain - ## HITS:1 COG:lin0298 KEGG:ns NR:ns ## COG: lin0298 COG0561 # Protein_GI_number: 16799375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 269 4 267 270 155 34.0 7e-38 MIATDLDGTLLTSDHRIGSKTKKALQMANKMGIKVVPASGRPLPGVLPYLKQLNISGHSN YAILFNGGVVQRLTGEKLISNDLTYEDLKEMLHYQQLGKVNLHFMTENHYYTMDRNLSII MAAASALNNMKIRVRDLPQIPQDFRFIKAEFSGSASEIKDFRQNLPKVFFEKWNASSSGI SSLGTDTIEVNNLVASKGLAIHQLAHRLGFHENEVVVFGDQGNDLSMFENNNFYKVAMGN AISDLKERADLITKDHDDDGIAYALKKIITSQV >gi|260196063|gb|ACQN01000004.1| GENE 9 5689 - 6498 966 269 aa, chain - ## HITS:1 COG:lin0298 KEGG:ns NR:ns ## COG: lin0298 COG0561 # Protein_GI_number: 16799375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 269 3 268 270 155 34.0 8e-38 MTIKMLAVDLDGTLLTTHNTIAAETQRMLTLARKQGLKVVLASGRPLSGILPYAAQLGLE GDQQFATVFNGGVAQSYSGKVLFSHEQNLHDVETMKHLQRLAHVNMHFETTEAFYTFDRI INVQMGINASTTNNEIHVCDLKDLKKDFSYIKCEFTGSVDEVARFRKRLPDWVFDQYNVV RSAENIIEFNNPAASKGLALVELANRLGFEEDEVMIFGDEGNDISMFSNPHFKKIAMGNA IDEIKDLADYVTDDNNHNGIAKALKKFVL >gi|260196063|gb|ACQN01000004.1| GENE 10 6598 - 7950 1848 450 aa, chain - ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 1 449 1 446 448 549 63.0 1e-156 MLKYFGTDGVRGIANEVLTPEMAFKLGRMGGYVLTKHKKDGEKAKVLVSRDTRISGQMLE YALISGLLSVGIEVLELGVITTPGLSYLVRAQGADAGVQISASHNPVQDNGIKFFGSDGL KLSDAKEEEIEQLIDAPEDTLPRPSALGLGTVTDYHEGASKYLQFIEQTIPEDLDGIKVV VDGANGASSHLISRLFADLNIDFTTIATHPDGLNINDHVGATHTKKLQEEVVKQGADLGL AFDGDADRCIAVDENGNEVDGDHIMYVIGTYLAEHGRLKKNTIVTTVMSNLGFTKALERA GLKNIRTQVGDRYVSEEMRANGYNLGGEQSGHVIISDYHNTGDGMLTGLHLMLVMKKTGK KLTELLKDFKEYPQRLINVPVKDKKAWKQNEKVMAVIKEVEDEMNGDGRVLVRPSGTQEL LRVMAEGPTQEQTDAYVNKIVEVVKVEMGE >gi|260196063|gb|ACQN01000004.1| GENE 11 7969 - 8937 1271 322 aa, chain - ## HITS:1 COG:lin2224 KEGG:ns NR:ns ## COG: lin2224 COG4856 # Protein_GI_number: 16801289 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 49 322 45 320 452 123 28.0 4e-28 MNKFFDKPWFYKIIALLAATLLVIYIDTTQHGYFTQGEQTTSQQTATKKVTISVPLQVSV NTDRYYVTGYPEKVKMTLSGASALVTSTQNTQNFRVYIDLTKLSVGKHTIKVKVTNLNKQ LAYSINPQKITVNIQRRKSRSLPVQIEYNKNAVPDAYKIGTAKADPSVVSVTGAKSEVNQ INKIIAKVVLPTNTTKTFEQQVMLVAEDKKGSQLNVVINPLAVNVKIPITLPKKTVKIKL NPKNESSDKVYSLTAETTSVTIYGKSSALKKIKELDTDVDLKNVTSSQTKKIKLKLPDGV IKASEEVVDVKVTVANSAQSSS >gi|260196063|gb|ACQN01000004.1| GENE 12 8934 - 9776 771 280 aa, chain - ## HITS:1 COG:lin2225 KEGG:ns NR:ns ## COG: lin2225 COG1624 # Protein_GI_number: 16801290 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 271 2 269 273 279 52.0 4e-75 MTFNFTNFFTWQNLSILLDILVVWYILYLLLMLIKGTKAVQLAKGLVIIWVARQVAGWIG LNTFAYIVDQLLSWSVIGVIIIFQPEIRRGLEHLGRMPFFNGNAKTERQMSEKFVAELDK AIQYMSKRRIGALITIQRNTGLDDYIETGIGLDAEVTGALLINIFIPNTPLHDGAVIIRN GRIAVAAAYLPLSDNSMIPKKLGTRHRAAVGISEVTDAITIVVSEETGGVTITKNSQFML DMTRDEYMKYLTSELVPKDEVRQTVIQKLLGRLWNWGAGR >gi|260196063|gb|ACQN01000004.1| GENE 13 9813 - 10886 950 357 aa, chain - ## HITS:1 COG:lin0800 KEGG:ns NR:ns ## COG: lin0800 COG0687 # Protein_GI_number: 16799874 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Listeria innocua # 1 357 1 357 357 390 55.0 1e-108 MKKLIWGAAIILALCLGLSLAANKLDSSAATSSKKTLIIYNWGDYIDPSLITKFEKQTGY KVIYETFDSNEAMYTKVKQGGTSYDLVIPSDYMITKMRKGHLLDKINTDKLSNFKNINKQ FLHQSFDKKNQYSVPYFWGTLGIIYNDKYVKPGEIQHWNDLWNSKWKNSILLVDSARDIM GSSLVSLGYSMNTTNSVELKLAKTKLDSLGANVKAIISDEIKMYMIQNEAALAVTWSGEA SEMLSNNSHLHYVVPEEGSNLWFDNMVIPKTAKNKKAAYAFINFMLDAKNAAQNAEYGGY ATPNEAAMKYLPKSIRDDKQFYPDKNTIKHLQVYKDLPPKKVQEYNDLFLEFKMYSR >gi|260196063|gb|ACQN01000004.1| GENE 14 10883 - 11692 979 269 aa, chain - ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 2 258 3 259 268 291 65.0 8e-79 MKKVWGRLYLAFVLLILYLPIFYLIVFSFSSGKNMDVFRGFTLSHYADLFADGRLLAIFL DTIMLALLSSLIATVIGTMGAIAIDATKNKKKKTVLLSLNNVLMVSPDVIIGASFLVLFT VLGLSLGFGSVLLSHIAFSIPIVVLMVLPRIKEMDKSLIDAARDLGANNWQVYSKVLIPA ITPGILSGLFMALTYSLDDFAVTFFVTGNGFTTLSVEIYSRARQGIDLEINALSTLMFLI VLLLVGGYYLLTTRHSHKGNKPEIGGLIK >gi|260196063|gb|ACQN01000004.1| GENE 15 11689 - 12501 684 270 aa, chain - ## HITS:1 COG:lin0798 KEGG:ns NR:ns ## COG: lin0798 COG1176 # Protein_GI_number: 16799872 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Listeria innocua # 2 264 3 265 269 286 62.0 3e-77 MKNKRWFFLLPYSLWIGLFVVLPLLMIFWTSLTGNGSISLENFSNFFTNATFLRMTLNSF WYALLITLFTLLVSYPVAYILTKLKNQQFWLLLIILPTWINLLLKAYAFIGIFGKDGLVN NFLHLFGIGPVNILFTNFAFIFVATYIEIPFMILPIYTAIKEIDPALINAANDLGASKWQ TFRYIIWPLSLPGVESGVQAIFIPSLSLFMLTRLIGGNRVITLGTAIEEYFTTTMNWSMG STIGVILIVMMVAVMVMTGEKNKRKKEVKL >gi|260196063|gb|ACQN01000004.1| GENE 16 12491 - 13591 1298 366 aa, chain - ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 3 359 5 361 364 453 64.0 1e-127 MNIIELKNVTKRYDDGFVALKDINLEIESGKFYSLLGPSGSGKTTILRIIAGFTEATSGQ ILFDGQDITNLDASKRHLNTVFQNYALFPHLDVYENVAFALKLKKRPESEIKQAVKEALH TVRLDGYANREISELSGGQQQRVAIARAIINKPKVLLLDESLSALDKRLRKEMQFELRAI QKKLGITFIFVTHDQEEALAMSDEIFVLNEGQIQQSGTPVDIYDEPVNDFVARFIGDSNI VPGRMVQDYEVEFVNKHFECADAGINPREKVEVVLRPEDLDIVEPDKGKLIVTVESQLFL GDHFEIKAHDADENEWLIHSTNPTEVGKEVGIFFDPEDIHVMRFGESEEEFDARLEKYEG EDDNEE >gi|260196063|gb|ACQN01000004.1| GENE 17 13588 - 14367 1094 259 aa, chain - ## HITS:1 COG:SPy1101 KEGG:ns NR:ns ## COG: SPy1101 COG0812 # Protein_GI_number: 15675084 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 2 254 43 295 295 269 53.0 4e-72 MLVAAANEDGLDITVIGNASNLIISDKGIAGLVIILTDMNEIKLDGDIVEAQAGATIIKT AFFAANHGLSGLEFAAGIPGSVGGAVFMNAGAYGGESEQAISEVTVLTRTGEIKHYSHDE MQFSYRHSLVQNTGDIVVSARFKLKAGDKLKILDEMNYLNALRAYKQPLEYPSCGSVFKR PTGHFVGPMLIKAGLQGKQIGGAQVSTKHAGFIVNKGGATATDYLNLIHYIQKTIKEQRG IDLHTEVRIIGRDIEGESK >gi|260196063|gb|ACQN01000004.1| GENE 18 14604 - 15137 589 177 aa, chain + ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 165 1 164 306 114 39.0 8e-26 MNFIAMDFETANRHPESACSLALVMVRNNKIIDRFYTVINPQMPFDGRNIQVHQITPDDV KDAPTMAEVWPKIKALYQPGMLVAAHNARFDANVLKMSLARYDIDEPHYLVIDTLKTSRL FEPDLPNHKLNTVAEALDVELWHHHNALSDSEACAGILIKQNEKMGDEAIKNLIEQR >gi|260196063|gb|ACQN01000004.1| GENE 19 15183 - 15659 630 158 aa, chain - ## HITS:1 COG:BS_ydiB KEGG:ns NR:ns ## COG: BS_ydiB COG0802 # Protein_GI_number: 16077658 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Bacillus subtilis # 1 127 4 129 158 118 44.0 5e-27 MKLEINSAQEMQKLGASLGKVAKPGSLLLLNGDLGAGKTTMTQGLARSLGIRRPAKSPTF TIVREYREGRLPLFHMDMYRLENDDLASIDLNGYLNEQGIVVIEWPEIIMNDLPDDYLQL TLKRVDDSWDSTKRVVEVNAQGKQAKDWLEDTLAKFEE >gi|260196063|gb|ACQN01000004.1| GENE 20 15659 - 16636 1187 325 aa, chain - ## HITS:1 COG:BS_pta KEGG:ns NR:ns ## COG: BS_pta COG0280 # Protein_GI_number: 16080818 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Bacillus subtilis # 3 322 4 323 323 362 58.0 1e-100 MSIFDELKEKIVGQEKVIVFPEGEDERVLKAAVKLKNEGIIQPLVLGDETQIKQTAKTHE LDLTGLKIINPKNDIRKDDFAKQYYELRKGKESEEQAKKQISDPNYFANMLVYNGLADGC VSGAAHSTADTVRPALKIIKTQAGMKRVSGQFIMEKGQQRYIFSDCAMNIDPDADTLVEI AYQAAQTAKMVGLEPKLAFLSFSTMGSAKGEMVSKVQDATASFKEKYPEISADGEMQFDA AFVPSVGAKKAPDSNVAGHANVFIFPELQSGNIGYKIAQRLGDFTAIGPILAGLAKPVND LSRGCSSQDVYEAAILTAAQSLDVE >gi|260196063|gb|ACQN01000004.1| GENE 21 16648 - 17337 557 229 aa, chain - ## HITS:1 COG:BS_ung KEGG:ns NR:ns ## COG: BS_ung COG0692 # Protein_GI_number: 16080848 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus subtilis # 1 219 1 220 225 258 59.0 6e-69 MKELIGNDWDQVLGPVFSSESYQKLHNFLKEEYASKQIYPDMYHIFTAFKLTSFKDTKVV ILGQDPYHNPGQATGMSFSVNPGIALPPSLKNIYQELYDDVGCIPVKHGYLKKWADQGVL LLNAVLTVPYGHANGHQGKGWEEVTDQAIKALSERGEVVFILWGKFAQNKIPLIDESKNV IIKSAHPSPFSARYGFFGSRPFSRCNTALTKWGKRAIDWQLPQEVEIEK >gi|260196063|gb|ACQN01000004.1| GENE 22 17430 - 17945 523 171 aa, chain + ## HITS:1 COG:no KEGG:lhv_0746 NR:ns ## KEGG: lhv_0746 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 160 1 161 173 170 49.0 2e-41 MKLILLFNQQKNYGQIPVVDPAGQTQFFIQGKLHNSNHTLFLTDINHNEIGRLYQDGRSI LTSYTIDIIDYDLAQVKQVTNVEFPMFLTKKNYLITGSTKKGSYEFRSTFKKIASCESMI IDSGLALVCDIKKYQDIPYILLVAGLFSQWSATPLELPKFKFNNQLSTDCN >gi|260196063|gb|ACQN01000004.1| GENE 23 17949 - 18404 501 151 aa, chain - ## HITS:1 COG:SPy0504 KEGG:ns NR:ns ## COG: SPy0504 COG0691 # Protein_GI_number: 15674609 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 1 150 1 150 155 170 62.0 9e-43 MKNETNNVLAQNKKASHDYFIKETIEAGIALTGTEIKSVRARRIQLRDGYVQIYNGNAYL ENVHISEYKQGNIYNHDPLRRRQLLLHKKEIRKLAEIQAQQGMTIIPLKVYLKKGFAKIL LGVGQGKKQYDKRETIKKRDQERELRRKYRV >gi|260196063|gb|ACQN01000004.1| GENE 24 18417 - 20741 1375 774 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 11 722 7 703 730 534 40 1e-151 MAQDERVLATILEIFRHNPQRKFRVNQLERMSSRDHIKFAELVKALTFLEQEKQIVTDGN GEYQLASVDTEITGIFRANEKGFGFVRIDDEENADDIFVGPDNTLLALDSDYVRVKIIAN GNPWNGKGPEGKVIEILERGVETLVGEFYPLTDVQVKLSGFCGYVISSNKKFKNYKIYTP VDGITPQMGDMVKVSISQYPTEDMPENMQGAILETIGNKNDPGVDIMSIVAAHDIRTEWP EDAMKQANEIPDHIEQGELANRVDIRDQPAVTIDGDDSKDFDDAVVLWKLPNGNYHLGVH IADVAHYVKENSPLDKEAYQRGNSTYLVDRVIPMLPFRLSNGICSINEGVDRLVLSCDME ITPEGKRVAYDIHPSVMRSHGRLTYNKVNEALTKPANELEEKYAKLQPMLKKMASLHEAL YNQRHDRGAIDFEEPEAKIIVDEKGKPVDIVLHNRGTAEKMIESFMLLANETVAEAFFKK HVPFLYRVHETPDAERIQSFFEFVSALGLNIKADPNDVKPIDLQKVVTKTLGTPEEAVVQ MVMLRSLKQAHYSDEPLGHFGIAAEFYTHFTSPIRRYSDLMVHRMIHEYTDSNLSEDTQK HFGPILPDVAEQTSTQERKSIDTEREVNDLKMTEFMSDHVGEHFDAVISSVTSFGMFIQL PNTVEGLIHISNLTDDFYNFDEKTLTLTGRGTHRQFKIGMPLKVTLINANVEQHQLDFEI YDPNAPKKEHNDRGIRRPRRRDDRFGRGSRNRDGNRSGHKSRNSRDNRGRRRYK >gi|260196063|gb|ACQN01000004.1| GENE 25 20802 - 21020 288 72 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00448 NR:ns ## KEGG: LCRIS_00448 # Name: secG # Def: preprotein translocase # Organism: L.crispatus # Pathway: Protein export [PATH:lcr03060]; Bacterial secretion system [PATH:lcr03070] # 1 72 6 77 77 85 90.0 6e-16 MTLLIIVSILIVIATMMQPQKQQDALNALSGGAVFSGQSKKRGFEAFMEKVTSVLLVLFF LLAFVLAYLSTK >gi|260196063|gb|ACQN01000004.1| GENE 26 21180 - 22478 2232 432 aa, chain - ## HITS:1 COG:BS_eno KEGG:ns NR:ns ## COG: BS_eno COG0148 # Protein_GI_number: 16080443 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Bacillus subtilis # 1 430 1 430 430 582 68.0 1e-166 MSVITDIHAREVLDSRGNPTVEVEVYTELGGFGRAIVPSGASTGEHEAVELRDGDKSRFN GTGVLTAVKNVNTEIAKAVIGLDVTDQRLIDQTMIDLDGTPNKGRLGANAILGVSLGAAR AAADELGMPLYEYLGGPNAHVLPTPMMNVINGGKHADNNVDIQEFMIMPVGAKSMHEAVR MGAETFHALKALLKERGDSTAVGDEGGFAPNLANNEEPFEVLVEAIQRAGYKPGDDIAIA MDCAASEFYNKETHKYVTVADGREYTAEEWTSLLESLVEKYPIISIEDPLDENEWDDWKG FTDRLSKKVQIVGDDLFVTNTSYLKKGIQMGVANAILIKVNQIGTLTETFEAIEMAKEAG YTAIVSHRSGETEDTTIADLVVATNAGQIKTGSMSRTDRIAKYNQLMRIEEELDSAAEFK GIHSFYNLHKQF >gi|260196063|gb|ACQN01000004.1| GENE 27 22538 - 23293 892 251 aa, chain - ## HITS:1 COG:SP1574 KEGG:ns NR:ns ## COG: SP1574 COG0149 # Protein_GI_number: 15901416 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 2 249 3 250 252 331 65.0 8e-91 MRTPIIAGNWKLHMNPAQTAEFVKSVKDKLPESNKVESVIAAPAVDLDALIKASEGSNLS VAAENCYFEDEGAFTGETSPKVLKEMGVKYCIIGHSERRDYFHETDEDINKKAKAIFRNG LLPIICCGESLETREAGKEEEFVVDQIKKALDGLTSEQVSSLVIAYEPIWAIGTGKTATS DQAEEMCKTIRESIAKLYNEETAENVRIQYGGSVKPANVKELMAKPNIDGGLVGGASLEV ESFLSLVNYQD >gi|260196063|gb|ACQN01000004.1| GENE 28 23308 - 24519 1530 403 aa, chain - ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 403 1 396 396 508 67.0 1e-144 MAKLIISDLDVKGKKVLVRVDFNVPIKDGVIGDDNRIVAALPTIKYIIDNGGKAILLSHL GRIKSDADKKELSLAPVAKRLGELLEKDVEFVPSNEGKEVEDAIAKMNDGDVLVMENTRF QDIDNDFGKRESKNDPKLGEYWASLGDLYVNDAFGTAHRSHASNVGIATAMKAEGKKVAA GFLMEKEIKFLGNAIANPVHPFVTILGGAKVSDKISVITNLIPKSDHILIGGGMAYTFLA AQGHKIGKSLFEADKVELAKELLEKANGKIVLPVDNVAATEFSNDASREVVGDDIPDNEM GLDIGPKTVELFRKTLQGAKTVVWNGPMGCFEMPNFAEGTLEVGRAMADLPDATTIIGGG DSTAAAKQLGIAPKITHISTGGGASLEYLEGKELPGIECISDK >gi|260196063|gb|ACQN01000004.1| GENE 29 24625 - 25641 1257 338 aa, chain - ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 338 3 333 333 424 66.0 1e-118 MTVKIGINGFGRIGRLAFRRIMDLGEKSSDIEVVAINDLTTPALLAHLLKYDSTHGTFNH EVSATEDSIVVDGKKYRVYAEPQAQNLPWVKNDGVDFVLECTGFYTSKAKSQAHLDAGAK RVLISAPAGNDLKTIVYSVNDDTLTADDKIVSAGSCTTNSLAPMASALNKEFGIEVGTMT TIHAFTSTQMVLDGPVRGGNFRAARTSSANIIPHSTGAAKAIGLVIPELNGKLQGHAQRV PVVDGSETELVSVLSKKVTADEVNAAMKKYESASFAYNDDQIVSSDILGMTAGSIFDPTQ TEVTTAGDKQLVKTVAWYDNEYSFTCQMVRTLLKFATL >gi|260196063|gb|ACQN01000004.1| GENE 30 25699 - 26730 841 343 aa, chain - ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 9 342 9 342 348 286 45.0 4e-77 MDTDFTLLQNLVPDVLKISRQRYQVLEQISLRYPVGRRAVAQQLGMSERTVRTETEYLKK LGLIEIKPFGMYLTEKGEETLKDATSLINRLFNASQAEIKLAKKLKIARAIIVPGDADLQ ERVSILMGEKLNSALDLLLPLGSSIITVLGGATLAKASKVLSSSLSKNRDLEFVPGRGAL GESVETQSSTIVQEMAKATGGKYKTLYLPENVSKDAYRSLIRDPAISDVLQDISQCDVAI HGIGLAEDMAKRRGYDSVALSRIRATGAVSECFGCFFDENGKMIERIPRIGLQFEDLSKI PHIFAFAGGHSKAKAISSYMHNAPSQTWLITDEGASDLILKGQ >gi|260196063|gb|ACQN01000004.1| GENE 31 27083 - 27409 352 108 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227521446|ref|ZP_03951495.1| 30S ribosomal protein S9 [Lactobacillus gasseri JV-V03] # 1 108 1 110 110 140 61 3e-32 MAITVNLYYIGKNGSALKFVQEMKNLGIVDGIRKEVGNIRYDYFQSLDDPEKILLIDSWE DQTAIDAHHQSHFMKELAKLREKYDLHMEVERYQQIKNNAKDKKYIRK >gi|260196063|gb|ACQN01000004.1| GENE 32 27510 - 29105 1922 531 aa, chain - ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 528 7 534 545 542 53.0 1e-154 MKKNQISLFSGVMLALSSLIGSGWLFGAGSAAQVAGPSSIISWIIGAAIMMLIAFNYVEL GTMFPESGGMSRFAEYSHGQLLGFLSAWANWVSLITLIPIEAVACVQYMSSWPWSWANWT RGFFHNGTITNEGLWAVYLFMFVFSLINFGSVKLLTRFTSLIAVFKLLIPSLTIIFLILA GFHSSNFGNNVSTFMPYGTKGIFQAVTVSGIILSYDAFQTVINLAGEIEKPHKNIFRGVW VSLSVTAIIYVLLEVAFVGAVEPTMLAKVGWHGVDFASPFADIAILLGLTWLSVLLYMDA FISPFGTGVTFVATSARTLMAMTRSGNVPAFLGRVNKKYKTPRYAMVWDLILAMALVFFF RNWSELATVVSVSTFVAYATGPVAAISLRKMRPNFKRPFKSVHLKWVAPVSFVLTGLVIY WAMWPTTIEVIFVVLLGLPIYFYYQFKKENKNFAQQFKSSLWLLSFLAFISIISYLGSSA FGGNNTFKYPWDFVIVILASIGFYIWGVKSSYDGEDLKDAEKVNKDVRIED >gi|260196063|gb|ACQN01000004.1| GENE 33 29274 - 30698 961 474 aa, chain + ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 6 469 5 470 473 395 46.0 1e-110 MTNENHNKKIAWTTLAMMAFSTVWGFGNVVNGYIYFDGTKVIFSWILMFALYFIPYALMV GELGAVFQKSEGGVSSWVDATLGPKWAYYAGWTYWACHIVYISSKGTGGLRAMAWGIWGD ITHFDALPTAWVQIATLIIFLFFCWIATKGLSILKTLATLAGTSMFIMSILFIIMMFAAP AINPHAGFNNIDWNLKSLIPTFNWKYFTSLSILVFGVGGCEKISPYVNKVKDPSRGFPKA MILLATMVIISAILGTVAVAMMFSTKEINADLNNYISNGAYWAFQKLGEYYHLGNLFLYI YAWCNVIGQFAVLVLSIDAPLRMLLGSKQAKEFIPRKLLKKNRYGAYINGIWMVVILSGG LTLAQALVPSSTAVMAQLVKLNSTTMPLRYLWVFAAYIALRKQTDKFTSNYKMTKNQGLA LFAGFWCFFVTGFSCLVGIYSPDPFTLFLNILTPIVLTALGVILPIIRKHEDKN >gi|260196063|gb|ACQN01000004.1| GENE 34 30786 - 31253 426 155 aa, chain + ## HITS:1 COG:SA1678 KEGG:ns NR:ns ## COG: SA1678 COG0735 # Protein_GI_number: 15927435 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Staphylococcus aureus N315 # 1 151 1 146 148 103 37.0 9e-23 MEVEKLSEEKIADQAAKIIRAHGLKRTPQRLKILIYLMTHHNHPTAEMIFNDISLSDEKT GIATVYNTLNTFVDLGFVIEINNGNDGSTHYDFFAKPHFHVICTNCGKIADVEYANFDKI ESKMRQETEKQTGYITRSSHIKIYGLCPDCQKLEK >gi|260196063|gb|ACQN01000004.1| GENE 35 31347 - 31928 759 193 aa, chain + ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 2 191 3 192 198 263 70.0 1e-70 MLVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDIS LYINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVL IHQPLGGAQGQQTDIQIAAEEILKSRKKLNEILHETTGQPIEKILKDTERDNYLTAQEAK DYGLIDEIMTNMK >gi|260196063|gb|ACQN01000004.1| GENE 36 31980 - 33173 1050 397 aa, chain - ## HITS:1 COG:no KEGG:Ldb1448 NR:ns ## KEGG: Ldb1448 # Name: not_defined # Def: putative permease # Organism: L.delbrueckii # Pathway: not_defined # 1 383 1 388 404 366 52.0 1e-99 MKKYRNIYYLVNLLYSLGVAVWSGTIYLFMHHIGYSYGEINFFLSIFWVVTFIAEIPSGF IADHLGYLKTASISNLVRATGLAVLALSPKNFLLLALSAFLTALGDSLMSGTLPSWIANK AALNNEKDQLGEIYSTYSLIASPFNMIVGFIGAHFLANIDLRLPLLTGAAFLAVTFFILV ALFKYDSQAGTQKLSFKELNVVSEVKEVITNEYQTFKFILLCLPIWFISSGPIDQWQLYF QHGKRVDSGSILVAIGIVGYIGSYIYRYLYKKKINQLFLLIFSVIFLTISIELVVMLKGN YYLALGIFMIHNLFGTIQQMIQGTLLQESIKTEKSRATIVSVCNALDAGVSVLILSLNGY LSDHYGIGLAWQSLAIVGLVLFFGMLIYYKRGRVKQA >gi|260196063|gb|ACQN01000004.1| GENE 37 33322 - 34314 1190 330 aa, chain - ## HITS:1 COG:FN0487 KEGG:ns NR:ns ## COG: FN0487 COG1052 # Protein_GI_number: 19703822 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Fusobacterium nucleatum # 1 314 1 322 338 198 39.0 1e-50 MKIAVFSPSESERKLIAATEKKFGCELKLIDDPLSAENVDQVADCNGVLLKPLGNLDDEI VYKKLADYGIKSIGLRIVGTNTIDFDLAKKYHLTVTNVPVYSPRAIAEMAVTQAMYLNRK IGEFKANMDKGDFTNPDSLISNEIYNKTIGLIGVGHIGSAVAQIFSAMGAKVLAYDVIYN PEVEPYLTYADFDTVLKEADIISLHTPLLKSTENMIGKKQFAEMKNDAILINAARGELVD TAALIEALEKHEIAAAGLDTLAHESSYFFKKVDDAQIPADYKKLAAMPNVIVTPHSAYFT KTSVRNMLEISLKDTLAIAKGERAHFVVSR >gi|260196063|gb|ACQN01000004.1| GENE 38 34380 - 35594 794 404 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851458|ref|ZP_05556847.1| ## NR: gi|256851458|ref|ZP_05556847.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 404 1 404 404 494 100.0 1e-138 MKTLTIRNSLIFIVYGLLLDYAIRQAMILLFYFIALVSIGGIVYFLFKNSSRILTFTIWN VLSLMLLIHIVHSNLKYELVIIAGLLLLIALNNQKQTIFNFHFQVITFVIMALSIVFLNS KLNITNASIVAGLFIIGFGVVLFLSKEKSMVFLLLGAILSLVTRFLIGMTQGITTAVLYF LVIALWLHLDQLFLYSLAWLKQKHVTFDANVIRRSSFVLTFLIGLLGLFATNLNYVSGVS GIWILYSVFMARAKDKFIYFDFSLVIALLLILKLNSTIFAIAILVLELLKLVLKAYSQPL PKMYFSLLSCAFIGILTLQGTVIVNYRLFIFVLLTFIAAILLRFEKGISKLGLVFIQLVL MFVLPLTDSKAGLAFFLAVGIYILVEEVLLLAFRRKISKITSNF >gi|260196063|gb|ACQN01000004.1| GENE 39 35735 - 36673 1177 312 aa, chain - ## HITS:1 COG:lin2615 KEGG:ns NR:ns ## COG: lin2615 COG1481 # Protein_GI_number: 16801677 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 312 1 310 323 324 54.0 1e-88 MVSYASEVKKELTNLEVHPEHAKAELSAFLRMNGILNLHDHQLSLDITTENPAIARRIFT LIKVAYNIEPLLIVSRKMKLKKNNQYLVRLNQQVNEILADLEIVDPEKGFVIGVPKKVLE EEQRAMSYLRGAFLASGSVNNPETSRYHLEIYSVYEAHNDDISYLMNHYFNLNSKKTKRR SGYITYLKEAEKIGDFLHIVGAFNAMLAFEDLRIMRDMRNSVNRLVNCDTANLKKTANAA ARQVEDIQLIDEKLGLDQLPEKLESLARFRLENSDLTLKEVAEQVPDGPISKSGVNHRFQ KIREIADKLREG >gi|260196063|gb|ACQN01000004.1| GENE 40 36666 - 37703 1024 345 aa, chain - ## HITS:1 COG:L189428 KEGG:ns NR:ns ## COG: L189428 COG0391 # Protein_GI_number: 15672944 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 17 333 4 320 327 345 52.0 1e-94 MAYAESRIIRVIKGRRPKVVVIGGGTGLPVILNALKEKNAEITAIVTVADDGGSSGAIRN YINVVPPGDIRNVLAALSDLPQEAKDIFQYRFDSSDSFFAGHAIGNLIIAALNEMHGNIF DAVQSLSKMMKVDGHVFPASNEPLTLNAEFVDGSREAGETEITSKDKRIKRVWVTDTNDD KEPEAVLPVLAAIMQADAVVLGPGSLFTSILPNLMISNLGEAIRQTSAEVIYICNIMTQK GETDHFSDADHVRILNAHLGGNYIDTALVNGAKIDMSKFNPADYDEYLEPVSSDFAGLRE QNCRVITDDFIDQRHGLVFHDGEKVAKEIIDLAFEAHCRRGENNG >gi|260196063|gb|ACQN01000004.1| GENE 41 37713 - 38588 951 291 aa, chain - ## HITS:1 COG:SP1566 KEGG:ns NR:ns ## COG: SP1566 COG1660 # Protein_GI_number: 15901409 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 287 1 288 296 315 53.0 9e-86 MASETRQLLIVTGMSGSGKTVAAHSLEDLGYFVVDNLPPTLLGSFWDLMNTSDDFNKVAV LIDLRVKSFYKDLENEINSLEDNGNTQATILFLDASDDVLVARYKETRRLPPLARSGRLL DGIQKERAILSPIKNISNIIVDTSSLTPKDLKAKLTGLFSEHGRKPFTVEVMSFGFKYGM PIDADIVMDVRFLPNPFYIPNLKPFTGLDKRVFDYVMDKDVTKVFYKKLLDLIETTIPGY IKEGKEKLTIAIGCTGGQHRSVSIAQQLARDLSKKYPVDISHREISRYIRK >gi|260196063|gb|ACQN01000004.1| GENE 42 38685 - 41525 3095 946 aa, chain - ## HITS:1 COG:SP0186 KEGG:ns NR:ns ## COG: SP0186 COG0178 # Protein_GI_number: 15900123 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pneumoniae TIGR4 # 2 937 1 943 943 1305 70.0 0 MVRDKIEIHGAREHNLKDIDLTIPKDKLVVVTGLSGSGKSSLAFDTLYAEGRRRYVESLS SYARQFLGQMDKADVDSIDGLNPAISIDQKTTSHNPRSTVGTVTEINDYLRLLWARVGHP ICPNDGTLIERQSVDQMVKRVMDLPERSKIQILAPVIRQKRGMHQEVFKKVARAGFVRLL VDGEMHEVSDEFDLDKNKKHSISIVVDRLIIKDGIKSRLTDSIESAWRLSEGYMDVDVIG GQVLNFSEDYACPKCGFSVGEMEPRLFSFNAPFGACEACDGLGMKLAVDEDLVIPDKDKT LNEGAIAPWANSDYYKMMLAQACQSLRINMDKPFKKLTERQRKIVLYGSDKKIKFHLEGD FGVNDTTQAFEGVMNNIDRRYHHPMSQFMREVMGKYMTELTCAVCHGKRLNQKALAVKVM GQDISEVSDLPIGKELTFFKSVKLSEAESMIAKPILKEVIDRLTFLVNVGLDYLTLSRSA GTLSGGEAQRIRLATQIGSNLSGVMYILDEPSIGLHQRDNDRLIASLKKMRDLGNSLIVV EHDDETMKQADYLIDMGPGAGSFGGKVMAAGTPEEVMANPNSLTGQYLSGKKFIPVPTER RKGNGKKITVSGACEHNLKNITVDFPLGKFVVVTGVSGSGKSTLVNTILKRALAQKLNHN SAKPGKFEKITGYKDIEKIIDIDQSPIGRTPRSNPATYTSVFDDIRALFAQTNEAKIRGY TKARFSFNVKGGRCEACHGDGIIKIEMNFLPDVYVPCEVCHGRRYNSETLEVTYHEKNIA QVLDMTISEAREFFSKIPKIHRKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLASELQK LSTGNNFYILDEPTTGLHVDDIKRLLVVLQRLVDQGNTVLVIEHNLDVIKTADWLIDLGP EGGEGGGQIVTTGTPEEVAECEKSWTGKYLKPVLQRDKNRTLENEK >gi|260196063|gb|ACQN01000004.1| GENE 43 41512 - 43557 1917 681 aa, chain - ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 663 1 659 662 912 69.0 0 MIKRQTNRKFDLVSKFKPAGDQEQAIDKLTAGFKAGAKEQILQGATGTGKTFTMANIIAK LNKPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI NDEIDQLRHRATSALMERNDVVVVASVSCIYGLGDPKEYAASVLSLHEGQEYERNVLLRD LVNIQYDRNDIDFQRGRFRVRGDIVEIFPAGNSDHAFRVEFFGDEIDRIVEVDSLTGEVI GERDQISLFPATHFMTNEEQMKQALKRISQEMDLQVKKFEGEGKLLEAQRIKQRTTYDME MMSEVGYTNGIENYSAPIEGRKAGEPPHTLLDFFPDDFLILIDESHATMPEIRAMYNGDR KRKETLIDYGFRLPSALDNRPLKLEEFEKHVNQILYVSATPGDYELNRTNKVVEQIIRPT GLLDPKIEVRPIQGQIDDLVGEINKRIERDERVFVTTLTKKMAEDLTDYLKDLGIKVRYL HSDIKTLERMQILHDLRKGDFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLI QTMGRAARNSDGMVIMYADKITDSMKIAIDETRRRREKQIAFNEEHGITPKTIVKPIRDV ISITKPVKEEKEKESFADLNFDELTKKQKQAMIKNLTDQMQDAAKKLDFEAAANLRDAIM ELQNSVHAPKKHKGKDFDGKR >gi|260196063|gb|ACQN01000004.1| GENE 44 43655 - 45379 2062 574 aa, chain - ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 572 1 570 572 517 45.0 1e-146 MTARQAYENWLKAENLPDYLQRQLKELGQNPAWVDDAFGTDINFGTAGMRGLLEPGTNRI NVVTVGRVTEGLAQLIEKEGQEAKEKGVVISFDSRYHSEDFAKLSAQILGYHGIKVYLFD GLRPTPELSFAIRHLGTFAGIMVTASHNAKQYNGYKIYGADGGQMPPEHAAVVEKAALEV ENQLAIPVSPIEELRAKNILQLVGEDVDEAYLEALDTINVNHDLIKETADKLKIVYTPVH GTGKVIYDRAFRQGGFKNFTVVPSQAIIDPEFPTTIKPNPEYRQVFDEGVKVADKVGADI IVATDPDADRLGAAVRTPNGDFQVLTGNQIATLISNYLLTNLKNSGKLDSSYEIITSVVS SSLPFKIAKSFGIQTKYVLTGFKYIGEEIDRLHKTGDGQFLMGFEESYGFLFKTFNRDKD AMQGALMFFEVAAYYASRNMSVFDGLQEIWNKYGASCEITKAIEMPGLDGQKRMAKVMEN LRKEQLKEINGHKVVKIEDFELAKEVTEAGERELVGFPKSNVLKYFLDDETWVALRPSGT EPVIKAYVGTNAETYAKAEEKCKAYHDAIAKFTK >gi|260196063|gb|ACQN01000004.1| GENE 45 45505 - 46431 573 308 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 5 306 2 306 306 225 40 6e-58 MTKQYDIIIIGAGPGGLTAALYAARANLSVLILDRGIYGGQMNNTGAIDNYPGFLEIQGP ELSEKMYQSAMKFGPEFKYGDVTSVDFSKKIKLVKTSDAEYEAKAVIIATGAEHKHLGVP GEEEYSGRGVSYCAVCDAAFFKDEDVVVVGGGDSAIEEGLYLANIAKSVTVIHRRDSLRA QPVLQKRAFANSKMNFIWNAQTEEIIGNDQKVTAIKYLDKETGEHKEINASGIFIYVGVE PQTSLFKELGITDKQGWIITNEKMQTSLDGVFALGDVRAKDLRQIANAVGDGSIAGQEAY NYLQSLND >gi|260196063|gb|ACQN01000004.1| GENE 46 46501 - 47523 1212 340 aa, chain - ## HITS:1 COG:SPy0226 KEGG:ns NR:ns ## COG: SPy0226 COG0240 # Protein_GI_number: 15674414 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 2 340 4 337 338 344 54.0 2e-94 MRKIAVLGSGSWGSVLASMLADNDVNNQVVLYGNRQSICDEINEKHSNSHYMKDWSLNKS VLATTDLTQAVKDSELVLFVVPTKAIREVAQNVKKAMLDTNTQPLIVAATKGIEPGSKKL ISQILTEEIYPDHEDKIVAISGPSHAENVAQKDITAITCASTNFENAEKVQEIFSNDYMR FYTSNDLIGVEIGGAVKNVIAIAAGMLVGKKYGDNAKAALMTRGLAEIMRLGVSFGAQPW TFSGLSGIGDLIVTCTSVNSRNWRAGKALGEGQKLEAVLENMGQVVEGAVTAKAVHEICQ KDGIDMPISEAIYKVLYEGADIDEEIRAMMCREKTSEVRW >gi|260196063|gb|ACQN01000004.1| GENE 47 47526 - 48290 769 254 aa, chain - ## HITS:1 COG:SPy0585 KEGG:ns NR:ns ## COG: SPy0585 COG0682 # Protein_GI_number: 15674672 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Streptococcus pyogenes M1 GAS # 3 242 23 257 259 236 52.0 4e-62 MATGVLIATTMAIIEGKKRQIMSDDFIDFLLWAVPIGFIGARTYYVIFEWGYFSQHPDQI IAIWNGGIAIYGGLLAGLVVLLIFCRNRMLPPLLMLDIITPGVLAAQILGRWGNFMNQEA HGAQTSLTFLQSLHLPEFIIKQMYINGHYYQPTFLYESFFNFIGLVLILMFRHKKGLFKR GEVFASYIIWYSTVRFFVEGMRTDSLYIFNVIRVSQALSLVLFIAAIIFVIYRRKQDNVA WYLDGSGLKFPYER >gi|260196063|gb|ACQN01000004.1| GENE 48 48379 - 49320 1176 313 aa, chain - ## HITS:1 COG:BS_yvoB KEGG:ns NR:ns ## COG: BS_yvoB COG1493 # Protein_GI_number: 16080553 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Bacillus subtilis # 4 313 3 310 310 311 49.0 1e-84 MADKVELTELFEDNNVLHVVQGKELIKNRAVTVSDIYRPGLELTGYFDFYPSKRIQLLGR TEISYAAMLDHETRLQVFNKMATPDTPCFLISRSLPVPKELTEAAAKNGIPILTTPESTT YIMSVLTQYLREHLAQRTSIHGVLVEINGIGVLITGASGVGKSETALALIQRGHRLIADD RVDVYQRDHDTVVGEAPKILNHLMEIRGIGIIDIKDMFGVGAVKDHTEIKLVIKLENWDP KANYDRLGFDQDTREICNIEVPQVTIPVKVGRNLEIIIEIAALNFRAKQMGFDASVTFQQ QLAKLIAENEKNK >gi|260196063|gb|ACQN01000004.1| GENE 49 49332 - 49637 369 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854883|ref|ZP_04645213.1| ## NR: gi|238854883|ref|ZP_04645213.1| hypothetical protein LACJE0001_0851 [Lactobacillus jensenii 269-3] # 1 101 1 101 101 154 93.0 2e-36 MGFIEFLVVVLILAIVVCVLFALLKLFILILPFILIIAGLIWLYIYFLKRKIRREISKEM DSDYKMSWEDFVSYGKNTNKDTEEHHRKPARDVTTEDVNDK >gi|260196063|gb|ACQN01000004.1| GENE 50 49650 - 50648 1266 332 aa, chain - ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 1 326 1 326 327 384 58.0 1e-106 MADPDFWNNQESAQKLISETNKLKEKRDHFNDLAQAFSDEETALELLKEEPDDDLQVEVE TDLEKLKDSFHQYELNLLLSGKYDANNALMEIHPGAGGTEAMDWAQMLMRMYQRFSEAHG FTFEIDDYEPGDEAGVKSVSILIKGTNAYGLLKGEMGVHRLVRISPFDAAKRRHTSFASV EVIPEIDDSIEVDINPADLRIDVFRSSGAGGQHINKTSSAVRITHLPTGIVTTSQAQRSQ FQNKETAMNALRAKLFQLEEEKKRKEKEKLKGVQQDIAWGSQIRSYVFHPYSMVKDHRTN FETSDVNGVMDGKLDNLIYSFLQWRLSQENPE >gi|260196063|gb|ACQN01000004.1| GENE 51 50823 - 53225 2990 800 aa, chain - ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 796 1 783 839 1013 66.0 0 MVNILKKLYDSDKRELKKFEKLADKVEGYADEMSKLSDDQLQAKTPEFKKRLENGESLDD ILPEAFAVCREGAKRVLGLYPYRVQIIGGISLHFGNISEMMTGEGKTLTATMPVYLNALT GKGVHVVTVNEYLSGRDEEEMGQLYRWLGLTVGLNLNEKSPDEKRAAYNCDVTYSTNAEL GFDYLRDNMVVYKEQMVQRPLNYAIIDEVDSILIDEARTPLIISGEAQQATGEYIRADRF VKTLTEDKSDDDVDDDKDYGDYKIDWPTKTISLTRQGIAKACKHFGLKNLYDVENQVLVH HIDQALRANYIMLKDIDYVVQDGEVLIVDSFTGRVMQGRRYSDGLHQAIEAKEGVKIQEE SKTQATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMQVITIPTNRPIQRKDMPDILY PTLDAKFKAVVEEIKKRHAKGQPVLVGTVAIENSERLSKMLDAENIPHAVLNAKNHAKEA EIIMKAGQRGAVTIATNMAGRGTDIKLGPGVRELGGLAVIGTERHESRRIDNQLRGRSGR QGDPGYSRFYLSLEDDLMKRFGGDRVKVFLDRISDNDDDKVIESRMITRQVESAQKRVEG NNYDTRKQTLQYDDVMRTQREIIYGERMQVIEEDKSLKNVLMPMIKRTISHQVDMFTQGD KKDWRIDSLRDFIVSSLTNEEVADKIDLKNIKSADELKEKLYNLAEENYKDKEETLSDPS QMLEFEKVVILRVVDDRWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQDAGYRMFEEMVAN IEFDATRLFMKAQIRQNIAR >gi|260196063|gb|ACQN01000004.1| GENE 52 53364 - 53927 791 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116629960|ref|YP_815132.1| ribosome-associated protein Y [Lactobacillus gasseri ATCC 33323] # 1 187 10 196 196 309 80 3e-83 MKGESFMLKYNVRGENIEVTEALRSYVEKRLEKLEKYFELTSDVIAHVNLKVYKNHDAKV EVTIPLPYLVLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGREKGVKDFFIETPA EEEKPTSEFDIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAETNGTSIVYRRNDGRY GLIETNE >gi|260196063|gb|ACQN01000004.1| GENE 53 53989 - 54666 338 225 aa, chain - ## HITS:1 COG:L0319 KEGG:ns NR:ns ## COG: L0319 COG1040 # Protein_GI_number: 15673071 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Lactococcus lactis # 1 225 2 216 216 99 33.0 7e-21 MRCYLCGNKFLPALNFYNLFNPLSESVDILCLDCRNSFSYLEKGCKYCQKSGENEICQDC QIWQKKYQALLKNRAIYAYDVQFYNAMRLYKRYGDYQVGKALAALIRTRVPLGFDYYIPI PTSESHIKKRGFDTIYEIFRDLVPLCPILKKYDLKISQGELNRQERLATPQSFYLEKKTK QQLNPNGKVLLLDDIYTTGRTLYHARDAIWQLYPDIHVESFTISR >gi|260196063|gb|ACQN01000004.1| GENE 54 54663 - 55943 736 426 aa, chain - ## HITS:1 COG:SP2208 KEGG:ns NR:ns ## COG: SP2208 COG4098 # Protein_GI_number: 15902015 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Streptococcus pneumoniae TIGR4 # 36 426 40 428 432 278 42.0 2e-74 MENHTSLAGRQWIINQDDSSIFPNCEKISGIINNICQRCGSYCNTKIAGKKLYCRACIGL GRVSENDYLIRDLSNKSYSKQNDLLTWSGNLTARQAKVSQEICYAFKKRQDHLVHAVTGA GKTEMLFDCLKLCLEAGLRACIATPRIDVVNELYPRISSAFSKIKIGKYHGREYKDYEAE QLIICTTHQLLKFYHAFDLLIIDEVDSFPYAPSPMLHFGANNAVKTDGMKLYLTATPPDD LLEKIKHKKITVSLLNRRFHGGLLPVPKEKLFLKPFLKKKQLNKHLLKQIILVIKAGHPL LLFVPRINEIPVYLEALKACHQLKEMVIKGVHAADEARIDKVQEFRDKKIDILITTTILE RGVTFKHVWVIIVAADDAIYTRASLIQIAGRVGRSSDDQDGLVLFCYHKYTLPIRQAISE IKRMNR >gi|260196063|gb|ACQN01000004.1| GENE 55 55991 - 56653 735 220 aa, chain + ## HITS:1 COG:lin2660 KEGG:ns NR:ns ## COG: lin2660 COG1739 # Protein_GI_number: 16801721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 209 3 207 211 172 45.0 5e-43 MSEKENFLTIKEAGQNELIIKKSRFIASFARTDTKEKAEAFVKEISKKYHDATHNTYAYT IGLNDDQVKASDNGEPQGTAGVVELRALQLMKLKNVTVVVTRYFGGIKLGAGGLIRAYSN SVTEAAKAIGVVKRVLQKELTFSIAYNRLDEINHYLEENNVFVSNREYGTDVTFTLFVED KDIEPLETDLTDLLKGKVDLKEIGQRYNEILLKEVNYHEQ >gi|260196063|gb|ACQN01000004.1| GENE 56 56691 - 57860 1232 389 aa, chain - ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 2 360 14 395 443 332 47.0 8e-91 MFLIIVKLFFLVIIQTAVTPFIRRLAFVLGAVDNPNARRVNKKPMPTIGGLGIFVTFNIG IFILLREQFPTHEAFSILLASSVMVLTGLIDDILELKPKQKLAGQIIAAMIIYFLAGIRM KEIILPFSKQVITLGWWSLPITIFWILALTNAVNLIDGLDGLATGVSLISLSTMGVVGYF FLHTKELYIPIACFILAAALLGFLPYNFHPAKIFLGDTGALYIGFMISILSLKGLKNVTF ISLIVPIIILGVPITDTVYAMIRRKLNHKPISQADKHHLHHQLMRMGLSHRQAVLCIYGI SLVFSFVSLLFLLSPSWGIWPLILGLLIALEFFVESVGLLGDKYHPLLNLIQRMINSTRR SDPTVEVWHLGGEKPNQLKRKTSRDNKDN >gi|260196063|gb|ACQN01000004.1| GENE 57 57966 - 59597 2200 543 aa, chain - ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 7 543 5 520 520 459 54.0 1e-129 MMKTDLIPVLIAIVSLLIGYGIGYLIRKLHWEKQAENARNDAQHLLENAHTKLDAIKAEV EVAKQTAKTVRQEAENDKKAQILEAKEEIRAYREQTENDLSKQRIELSHRDARLQQKEDA IQEKEKDLSKKDAQLTQTKTQLEQREADLTQKQTEADELLSQRKEKLYEVAELSKDEAKK IILAELSNQLDSERAELIRNSNEQAQAKADRFARQILVDAIQSSAADTVAETTVSVVELP NEEMKGRIIGREGRNIRSFEALTGVDLIIDDTPKVVTLSGFDPIRREIAKRAMERLIKDG RIHPARIEEMVDKARKEVNDDIYEAGEGALIELGIHKMHPELVKVLGRLKYRTSYGQNVL AHSIEVGKLTGTMAAELGLDERLAVRAGLLHDIGKAIDHDIEGSHVEIGVELARKYHESD IVVNAIAAHHGDVPKLSFIAELVVAADTISSARPGARSESLENYIRRLTQLETIASGYQG VSQAFAIQAGREIRVMVEPDRISDDRTTILARDIRNQIEKEMEYPGNIKVTVIREKRAVA IAK >gi|260196063|gb|ACQN01000004.1| GENE 58 59721 - 60803 1134 360 aa, chain - ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 4 335 2 333 348 481 75.0 1e-135 MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKVDTQISTVPTGSLALDAAIGVGGYPRGR IVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPN TGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSG NINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSSDVVGN RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAVDKDIVDKAGSWYSYKEDRIGQ GRENAKQYLEDHPDIYNEIMTQVREAYGIDAKSLEEKEDPAKIKEKIEQDEKSGEKASKK >gi|260196063|gb|ACQN01000004.1| GENE 59 60980 - 61543 278 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 182 484 668 904 111 34 1e-23 MNLPNRLTVFRIILIPVFMLVLILNFPTGSFNFANVNIPFSQVLAAVIFAGASYTDYLDG HIARARGLVTNFGKFADPLADKMLVMTAFVFLVSMGKAPAWIVAIIVCRELAVTGLRLIL VENDGEVLAAKMPGKIKTATQMLSIIFLLLGDIFFIGTILLYICLIFTIYSGWDYFYQSR DVFAGEL >gi|260196063|gb|ACQN01000004.1| GENE 60 61551 - 62615 1337 354 aa, chain - ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 279 1 308 311 95 27.0 1e-19 MANIGEKLRSAREAMGLSIADVEKTTKIQSRYLTAIENSDFDKLPGDFYVRAFIRQYAQV VGLDGKELLAEYHQDVPETNSDEYVENSIDNKTEEVKKTTNSKKGMLKNQMPRIILGAGV VIVIVIIYVLITSLFRGSSQQASDAGDSVTVSSQSDSSSSSEKASSSTEKSHVKITRLGY GSYQVTGLKSNRNLVIHAGTNNLSASVTVDGETKWSGSISSDSKHTVKIPESAKSVSIYL SNDTGTKVTVGGKKIPYTPAGTSLNLRLTIGKVSSSSNSGTTQSSYTNTYSQSSSIATSS SSVYTQSSQASSSQTNTNQTNTNQTSQNTTNQNTGNTGTTGNTGAGEGQNNGGQ >gi|260196063|gb|ACQN01000004.1| GENE 61 62668 - 63396 726 242 aa, chain - ## HITS:1 COG:lin1431 KEGG:ns NR:ns ## COG: lin1431 COG1028 # Protein_GI_number: 16800499 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Listeria innocua # 1 242 5 243 243 144 34.0 1e-34 MKRAIIFGATGGIGQVIANELAADGWSLYLHYSNQEQVANKLANQLMSQFPKQDFIAIKL DFLANNFELQQFCKGLLPVNVVIFAQGVTNYGFFGEQDLDNLEQEIQINLVTPLKLTRLL EPCLLKYKHSRIIYLGSVYGGQASALESAYSASKAALTRFSQAYAREVAASGLTVNVLAP GAVDTPMNAIFSDDVLDEVKSEIPAGRLASGKDISFWVKNILQPESDYLTGQTIYITGGW LI >gi|260196063|gb|ACQN01000004.1| GENE 62 63407 - 64642 1063 411 aa, chain - ## HITS:1 COG:BS_ymfH KEGG:ns NR:ns ## COG: BS_ymfH COG0612 # Protein_GI_number: 16078749 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus subtilis # 6 402 1 405 415 158 29.0 2e-38 MKKLDIEKRNFSSGLTAQVVLRKGFKQKFFGIIVDFGSSDKQIPGSAHYLEHLLFSKKSG DITERFDEIGASTNAFTSYNATMFYASSIDNVSKTVDLLFELVGDPNFSKKSIDKERPII AQELAMYRDEPTWPISDSIMKQLFGESNLGLDIGGTSQTIKQINSRNLARIYRENYTANN MHFIAVGDFAPSAITRLFSQVKKLDKQYLQSGPKRDHTFKSEAGKLGITEFKNKTEVPYF CLGIKLPDFKKVLVNNDLGQILFEIMLESMLGEKSAWYQEKMLHGELTSPLQFDVNYTRQ GNFVTILGINNGDSLLSDLKTTLFASEKYTKQMNELRELFEMLKKVSLATLLAAFNNLSD LGFELAEEAIHDENIFDTLKLLQRMSFEEYWQICQDLLAESKTCSVFSTIE >gi|260196063|gb|ACQN01000004.1| GENE 63 64639 - 65850 1212 403 aa, chain - ## HITS:1 COG:SA1121 KEGG:ns NR:ns ## COG: SA1121 COG0612 # Protein_GI_number: 15926861 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Staphylococcus aureus N315 # 7 402 13 415 421 68 19.0 3e-11 MDNNFFITENKNLTKANIGFFLKMPLTGHNLAMASLLAKMQVNSSQYFNTINKQTRALTD LYNMSFDVTPQLYGRELLLMYRLSYIEPLEVMDPEYSYEKIIETFSRIVRYPNLDSKVIK LAQNQLFNEYQELMASPTSYAWEHFFKKWYHDQPDFAHGIMGPINEILEADKEGLDAYSE ALTTCPAAMIGNAKNSKYIIKLLKDAFSDYDFEAKFTSSNLVIEMLPDPFTDEEKRNFEQ AQMLLGFGYNGQLNKKERLAGKFLARYLAGDDSSILFRKIREQLGAAYAVDADNYVNNSL LLISAGLSHDKLEQASKIAQEEIDNIKAGDIDQAIFKKIKKAIYNEHQYGLDRAGYRIML KLRALLMPEYAFDDLGKSIRQMQIKDLIKLANKLTLNESFYIK >gi|260196063|gb|ACQN01000004.1| GENE 64 65840 - 68227 2147 795 aa, chain - ## HITS:1 COG:BS_spoIIIE KEGG:ns NR:ns ## COG: BS_spoIIIE COG1674 # Protein_GI_number: 16078743 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 16 785 15 777 787 592 43.0 1e-168 MPRKRKKATKAKTVAQKELRWAIFGIFLVIYALLTFAKLGLIGKEFANILRFFIGDSYPI LAFLFLMFGFVMLIYSKPPLIGFKRSSGLFLAYSGLVLELAANFFSHLDVFNGFINVFTK TILAEFSRGNLTESVGGGLVGSFYYSIFYPLLGNLGAVILGLLLLISGLLMFFDVKFVQI LHLFQSSSQKFIETNKDAGIKLKDKYVEARDNYLQNRDNRKNLQDPLANNDIFPDTGDMK TQSQTDLDVMPDLSKKTTTEKKTHFEPEIEIPSPSNSEEKELPKSHAFSDEDQKMKMELG NVDHGEIKPTHINSNYQKPPLDLLAPIKKVDQSGDKNLIRHNTQVLESTFKSFGVEVNVK KAILGPTVTRYEIQPAVGVKVSKIVNLADDLALALAAKDIRIEAPIPGKPLVGIEVPNKT TSAVSFKDVMLNQDNKSKANPLDVPLGKDVTGTTISANLTKMPHMLIAGSTGSGKSVAIN TMLTSILMKANPDDVKLVLIDPKMVELSVYSGVPHLLIPVVTDAKLAANALHKTVKEMER RYKLFAAGGVRNIGEYNQKVIENNQDKEKPVMKKLPFILVVVDELSDLMMVGGHDVEDAI VRLGQMARAAGIHMILATQRPSVDVITGLIKANVPSRISFAVSSGVDSRTILDQVGAEKL LGRGDMLYLPIGAAKPERVQGAYISVEEVEKVVAWVKDQQEADYNESMMPQKGEEQSDNS SNDEPEDEFYEEAVKLVTKQQSASVSMLQRRFRIGYNRAARIIDEMEAKGIVGPSEGSKP RQVLVQPKMENDNGQ >gi|260196063|gb|ACQN01000004.1| GENE 65 68247 - 68642 510 131 aa, chain - ## HITS:1 COG:lin0430 KEGG:ns NR:ns ## COG: lin0430 COG4835 # Protein_GI_number: 16799507 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 10 130 8 127 130 66 33.0 1e-11 MVEFTKETPVLVRNFHYDLNEENHVKSEVNIALRKAAQQDDEGNLLEAEGGSYFEIAVPF EVSPNPGEFTVSGLITQVVFLKDYYGDGQDLEKSDYKLLSRPLVEYIETLTYQLTSVALD EPVNLNFEPNF >gi|260196063|gb|ACQN01000004.1| GENE 66 68644 - 69201 763 185 aa, chain - ## HITS:1 COG:L161988 KEGG:ns NR:ns ## COG: L161988 COG0219 # Protein_GI_number: 15673131 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Lactococcus lactis # 3 169 2 169 169 194 57.0 5e-50 MTNHIVLFEPLMPANTGNIARTCAGTETVLDLIEPLGFQLDNKKMKRAGLDYWDKVEIHK HDDLKAFLDTLGPNDEMYLISKFSSKSYTDVDYTDNNKNYYFVFGKETTGLPETFMREYY DRNLRIPMSDHIRAYNLSNSAAMVIMEALRQQGFPKLEKSHHYENDKLKDDYNRHERYER NLGDE >gi|260196063|gb|ACQN01000004.1| GENE 67 69194 - 70399 1205 401 aa, chain - ## HITS:1 COG:SPy1011 KEGG:ns NR:ns ## COG: SPy1011 COG0628 # Protein_GI_number: 15675014 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pyogenes M1 GAS # 11 383 12 383 393 245 35.0 1e-64 MDNKTNLKRPTLFKDWFLNNRFTIFLLNILLFFLIIFLFEQISFILNPAWVFFCAILPPL ILALVQYYMMNPIVDFFEQKLKVPRTVTILVLFLLVLGALIWVINSLLPIIQGQVDVLIK NWPNIWDTSVKTTQNLLHDPHLKGFKSNINSVIDSVEKTLFKSWQKTGTAALTNISSAVS VITMIFMTLLTAPFVLFYMLKDGHQLNGCLTKFAPRRWQDSFSRLLHDINEAISAYIRGQ ITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIPYFGTFIALIPVLIIASITSWGML INVLIVFAIEQTIETRFISPIVVGNKMKMHPITTILLLIGASAVWGLWGVIFGIPIYAVV KIIVSRSFNYFKSVSRFYNDEDLFEINKQAQTKLDLGDKND >gi|260196063|gb|ACQN01000004.1| GENE 68 70480 - 73224 2689 914 aa, chain - ## HITS:1 COG:MTH1516 KEGG:ns NR:ns ## COG: MTH1516 COG0474 # Protein_GI_number: 15679513 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanothermobacter thermautotrophicus # 14 911 12 907 910 696 41.0 0 MDEKKIRELYAQSEIDSVYQTLNSSSKGLSSEEAEKRLEKYGLNEIKRPPKQSQWQTFIK NFTTLMAILLWISGFIAIVSGTMELGIAIWLVNIINGTFSFWQERQAQKATDALNKMLES YVQVYRDGKKKQVEAKHIVPGDVFALQAGSKVPADARIISATSLQVDQSALNGESVPESK RTSFDPGEGKYAESNMVYSGTTAVSGTATAICFSTGMDTELGQIAHLTQKQEKVDSPLTR ELNRLTEQISIIAFTIGLFFFIASILFVKQPFGAAFIFSLGMIVAFIPEGLLPTVTLSLA QGVKRMARKHALVKELNSVETLGETTVICSDKTGTLTQNQMTIHYIRTLNDEFEVTGDGY VNNGQVELNGKQLWYDEHPDLKVITEIASLDNDTSIENKDGQNKILGTPTEASLVIMAQK AGYDIHKQMVKMPRLREFPFDSERKKMSTVNQISDTEAAVLVKGSYSDLIKDCAFVQVNG EVKPLTMEDKQKLDRLNADYARQGLRSMGLAYKKIKNDDAISSLTIETAEDQLVFAGLVT MSDPPRPEIYDAIKHCHDAKIRVVMVTGDSKLTAKTVAVKIGITSENARVIDGRELDEMS DSELREALKDEVIFARVAPEQKYKIVKTFQENGEVVAATGDGVNDAPALKRADIGIAMGL SGTDVAKDAANMILTDDNFASIVAAIEEGRTVYSNIRKFLTYILSSNVPEAIPSVLYLLS GGLIPLPLTVMQILTIDLGTDMLPALALGAEPSDPDVMKRAPISRNDHLLNKRVLVKAFL WYGLLEALVSVAAYFFVNKQAGLAFGHLATSGDIYIKATTMTLGAIVFSQIANVINCRTE KVSVFKKGLFINPHIWTGILFEIILFIILTVTPGVQGIFNTGILGVSDWMMLCLIPIPLI LIEEARKWLFRIKK >gi|260196063|gb|ACQN01000004.1| GENE 69 73330 - 74352 1083 340 aa, chain + ## HITS:1 COG:L11851 KEGG:ns NR:ns ## COG: L11851 COG2706 # Protein_GI_number: 15674136 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Lactococcus lactis # 2 336 4 339 341 251 41.0 1e-66 MKVLIGGYTKKTSKGIYQADLTLKNGQASLENFKDYIEINGPTYFKKCGNYLFSIAKNGD EGGISYFHLNPVKLINSVFQTGSSPAYLGINEDKQLVYTANYHTAYLSVYHYDNQGVSLV DQIKHDNFNLGPRPEQSDGAHPHFFDETPSGKLVSCDLGNDSVDFYELKDGHLVHLARYL NEAGFGSRHIVFNKENNCFYVAGELSSKVNVVKYNERTWEFENIATYKTIPDDYTEHNGV AAIRMSNDGKFLYLSNRGHNSITVFKIKNDHTLELIQRISTFGEFPRDFNWDSSEKWVIV ANQNTDNATLYERNSEMGTLAVVQKDVAVPEGTCVIFSKE >gi|260196063|gb|ACQN01000004.1| GENE 70 74363 - 75193 931 276 aa, chain + ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 3 274 1 279 284 262 52.0 4e-70 MLINIIKAIILGIIEGITEFLPISSTGHLYLANYVVKLQENQSFIDMFMVVIQLGAILSI IVIYFNKLNPFSLSKTKLQRENTWSLWLKVIVAVLPSVIIGLPLNDWLDEHMTNWQVISA TLIIYGILFILLENYYRNRNAKLTDLNKISFRMAFLIGCFQVLSLIPGTSRSGATILGAM LLGASRYVSAEFSFFLAIPTMFGASLLKIVKYVHAGHTFVGDQLAVLLVGMVVSFVVAYL AVKFLLKFIQTHDFKSFGWYRIALGIIVIIIGVFVK >gi|260196063|gb|ACQN01000004.1| GENE 71 75207 - 75398 88 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLNLLLVLLIIWLLFKLGIGLFKILTFLFGIILIFYIASFIFIPILIILIIGLGIKTLSN NFL >gi|260196063|gb|ACQN01000004.1| GENE 72 75489 - 76481 1062 330 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01123 NR:ns ## KEGG: LCRIS_01123 # Name: not_defined # Def: mucus-binding protein # Organism: L.crispatus # Pathway: not_defined # 16 184 21 182 304 112 41.0 2e-23 AVEVPGKPGESVEVPDTTIPEGYELVPGQKVPTTIDFPGDGSNPSDKTVKLTHKIVVVTP DDPKSSNDPLPDNPSKNYPDGVTETNLRKRIKRTINVINPNGDIDVTTQLVVFERTATVD QVNGQVSYSDWKQVGEDKSWPKFEAPDITGYTPSTESVSEVIPNVNNENVTVNITYKADN SGSDRDANTPTDPQPQGQDITTNKGTTPSPSDGIKNKGDLPDGTKYSWKETPNTNNGDTT GTVVVTYPDGSKDEVKVTIHVTEPNKKTGMEDNKSTIVTSSSSANKVKNTANSKQSTLPQ TGANTSALAGLGIALMGLASMIFINKKKKD Prediction of potential genes in microbial genomes Time: Wed May 25 13:46:45 2011 Seq name: gi|260196062|gb|ACQN01000005.1| Lactobacillus jensenii 115-3-CHN cont1.5, whole genome shotgun sequence Length of sequence - 3910 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 2032 2872 ## LGAS_0410 adhesion exoprotein - Prom 2052 - 2111 1.9 2 1 Op 2 . - CDS 2119 - 2529 418 ## gi|256851492|ref|ZP_05556881.1| predicted protein - Prom 2735 - 2794 5.8 - Term 2834 - 2889 12.2 3 2 Tu 1 . - CDS 2895 - 3740 972 ## FI9785_83 putative secreted protein - Prom 3850 - 3909 1.6 Predicted protein(s) >gi|260196062|gb|ACQN01000005.1| GENE 1 1 - 2032 2872 677 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0410 NR:ns ## KEGG: LGAS_0410 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 329 621 1065 1352 2457 144 39.0 2e-32 MTKNVKIKGGANNVTIQVIGGPTDRQTWQQVQFDIDKGPTILHNSNELSDEYRDYFIHDK KFNGHYYNGSDPEALEMWTHINLPTFSYANYGRANLDRQTTMNHLFYDNNWFPASIKNRT SYEWDDALEFGGNWITRYKHNDGTTQNGPLINLDLNSNDDKNVKYLGDIYTFHYQSANGY YLGGTKKVQMDFTTVVDSTVTDVPETRLIAGYKAGAAGSDFRRAQENNHLVDNQTYKLIV NETSQRSDKKIPANAFKVAGPDNISKDYTHEELNQTNNTQEFNYYTDKIDTATQQNILNS LKVASTTQNGVTVSDPVIDTVNKTVTYNVVYTDTVAEKTTHIIFKDGDTPVKTVEVSGKP GDKVPVSEEDQKIPDGYELVPGEKVPTEVDFPSDGTTPEDKVVKLTHKTTTVNPDDPKTP EDTLPENPKVHYPDGVSEKDLNKTVTRRIYEVDPVTKEKVLVKTQEAKLTRTATVDEVTG KVTKYSDWTTGTWESYTASTKEGYTPDQSTVPEVTVDGDTESTEVVINYVKNPTGKIIFK DGDKPVKTVEVSGKPGDKVPVSEKDQKIPDGYELVPGEKVPTEVDFPSDGTTPSESVVKI QKKTPDTPSTDQPTGKIIFKDGDKPVKEVTVPGEAGKTVEVPDTTIPEGYELVPGQEVPT TIDFPGDGSNPSDKVVE >gi|260196062|gb|ACQN01000005.1| GENE 2 2119 - 2529 418 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851492|ref|ZP_05556881.1| ## NR: gi|256851492|ref|ZP_05556881.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 136 4 139 139 148 100.0 1e-34 MFNERQRFSLRKLSIGVVSVLLGVTFVSNAQVVKADEATNSVSASSSDVSSNSTTSSSSD ASVAASSSSDSVTTNESSQVTNQPQDLNSSNLASASTYTLGDGNRRYPSADKIQTMLITT LLFKILVKDTYKQAAL >gi|260196062|gb|ACQN01000005.1| GENE 3 2895 - 3740 972 281 aa, chain - ## HITS:1 COG:no KEGG:FI9785_83 NR:ns ## KEGG: FI9785_83 # Name: not_defined # Def: putative secreted protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 4 281 1139 1421 1423 71 31.0 4e-11 MKGDGSTTVTFEDGTTKDLTPDQTIKRYELGDPLFNEGKDKNFDGNFDKVPVKGDGDLTD EQKQEVKTNITKSNPDKGITNIEVKGDGSTIVTFEDGTTKELTPDQTIKRYELGDPLFNE GEDKNFDGNFDKVPVKGDGDLTDEQKQAVKENITKSNPDKGITNIEVKGDGSTTVTFEDG TTKDLTPDQTIKRYELGDPLFTDETNNGSQTSSDKDTNKSTKNDKVHNLTSAKGTSGNST ITKSSAKTLPQTGENKVGLEMLGLSLLGLAGMLFISKKKKD Prediction of potential genes in microbial genomes Time: Wed May 25 13:47:06 2011 Seq name: gi|260196061|gb|ACQN01000006.1| Lactobacillus jensenii 115-3-CHN cont1.6, whole genome shotgun sequence Length of sequence - 7916 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 7585 10402 ## LJ0621 hypothetical protein 2 1 Op 2 . - CDS 7681 - 7911 193 ## gi|256851495|ref|ZP_05556884.1| predicted protein Predicted protein(s) >gi|260196061|gb|ACQN01000006.1| GENE 1 1 - 7585 10402 2528 aa, chain - ## HITS:1 COG:no KEGG:LJ0621 NR:ns ## KEGG: LJ0621 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1881 2441 2152 2704 2789 239 36.0 1e-60 MGNFSTTNVDQAKGMDYMRQNSQVDPGKIFAGGPQNWGWASDMTKNYKITQEAQNNGTTK WTVTFLPDGKYYMNNIVNHADSGAYALMISKDNEVVKDANGNLFTVNETLRNNAASLGGS VVKTATAYIKGEMSQSYQDYDQAAINRWIATDPATATTYINSGKIPLTFATGYVTSSITT FTNTSSATQRSKVLNDRALYMDSYGIVPRDSTNYDNVHGFNSGIDSNGNGSSYWQKAFKM DENNANKNQNQNMWGNKNPVIDVNDFGYGILFRTQGSKFLNDNSGATWTVTFYTKPSGEK VSTYSGVIALGNEGTPQNADGGATRGQAAKTNSDIHLMQAASSGVSSGKIITSDSLDAAT AQVNVVVKNATNNATGNIPAVNYTLTKAPLTDVTGNTNSSTSSVTDSVVPNTGSVQKNYY ISESFAYSNDTDEMQAKIDKALNPTSDNGSKYLSLNINNLADLEKAGFKATTSYDSTNKQ YVITVANADKDNIKYPAVDPAALTVVNDKTNLSQDTASTAKITDLIKAANSNVTDVTYSD IDRAATLTYADGSTNSVSYDDLVVQVPAKTMIYQDSGADTFTITDDEAGSISTNVNAANA TAKLGIRVNQINGKYDGSVTVSRTSASGVYQTATLTPAQTIINIPNPVLVKDKTNITAEE KQKVVDNLKNANKTISDGFTSASVALDGTASVTFADGSKPITVPGTKTVFESIHQSIIPP SGLVWVKDQTNLTSSELDQVKQLFKDANDGATEVSFGTNNTGVTVKYSDGQVLTLDDVRA NQYTINYPKRVLVPIGETVSSVGGDVYKAAFQESIQKKASLDGIAYLLNISLDSSGNVTY TISTNNDSKRLVYSQGKLDAKYTTVFVKKLVKVADPNNLTDQDKQNIKDQLTKDNPNILF DWNNATINNGYNATSTLSFSEGSPTLDVVNSNLIYADAVAPKVKTAVGDPDNLTNDQKQS IIDKVIEANKDRGVTSATIDQNNGRVVVTYDGSSITETIPISDTIVYIPTRTVVSNKANN WTTPDYTLSDSEQASVKSATEAANKGFTAQVNNDGSVSLTDDNGNTATLTTDQTILKLPK RTVVADKKHLTSDEKQAVLTAIKKLNPSVADTSAGNVIADDGTATLSFVDNGTKTKVAGD LLVYQNATLNKPTTLTPVVDKTNLTSTEISQIIQNVKNANMSGGTTYLTDVNVVKDDNGN NVVSATLPDGTTHQLTMDDVAVTIPLRTVVANKGDQPDETGQLVPIYRLDDGEKQAMKDA FLKDNPNIASDHVQAHASGDITVYDDNGKEVATIPADKTTFDISTRIGVKNQKELDSGEV QVVTDVLKQGNANVDTTKISVGTDGTADDMAKVSFTDGTRSITIPGEKLTAQIVNNMVYP LEITSKTLVTDPTKLTDNDKAQIENSLRKNNPQVQSYEYGTDESGNPTITAVYPDNSKTT IPLSVVVAKYPEKTLIKLSDRNNNPAADLTNAQKEVIASAVKVANPNAEVIVNSDGSVTM TETVTYNVPTPVAGGDMHDPNVQVTTKEVTKTITTTISAPDAVINVPNKVKVDNVSSLTP FEKSKVWDAIKAANPNTKFNGIDITNIVEDNGDTPVTFQDGSPATKLTDLVAKKTVADTV VVNIPSERIIVNNRQQLSDEDQEAVKTAIANANPASDGKPTVTIDSDGNIKLTYSDGSSV DLPVKVNKITVQAPVRQIVQDKNENGTTTFPIDKEAIKKAFTIANPDLNSDNVVVDNIGG VNYTGSGTDDPSVYIPRDVTTIKVGPKVLVDNPTSLTDDEKDQVISTIKKDNFDSVTNEY GNFNPITHDSFQEDGLHVTYPAGQGQNVVIPYSDLVEQAAKGQDIYVAKGDTVNPSDLIA NKDALPEGTTPTLNGSVDTSTSGVKKATVTVTYSDGNSTQITGNVHVIEAGEPVKVGLNH NFTAEEAKSAINPNAELPEDAAYSWKTTPDTSTSGSDKEGVVTVTVGDKSVDVPVKVNVV SDADESVTPIPEKPVTVKHNAELPKAEDVITNKADMPNRTTYSWDPENTPKTDTVGEFPG KIIATFPDGSTKSVDVTVKVTPLDNETYSAKGKTVNVDKGTDPVAKDSIENTSDLPENTD YVWTKKPDTSTWGDKPGTVHVTYPDGSTQDVDVTIHVNSDADKYNPTTHPITVDHNEDLT GKASDTVDSNNYPITKIDWQTVPSTTTPGGVPAKIVVTYEDGSTDTLDTTVNVRPAQSEQ FDPASQEIPTRINQVPKAEDGIQKQDKNGKDMPTDAEYSWAKEPDVSKSGESTGVVNVTY KDGSVDQVTVPVRVVSDADENNPKADSVSVKRNADLPKAEDVITNKADMPNGTTYSWDPE NTPKTDTVGEFSGKIIATFPDGSTKSVDVSVTVITNDADNFNSNFDKVPVKGDADLTDSQ KEEVKGNVTKKNPDKGITNIEVKGDGSTTVTFEDGTTKELTPDQTIKRYDVGEPLTNTGE ADTDLNSFDKTTVKDADKLTDDEKGQVVSNIKKTNGDKDITNIDVKDNGRTIVTFGDGTQ KELTPDQT >gi|260196061|gb|ACQN01000006.1| GENE 2 7681 - 7911 193 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851495|ref|ZP_05556884.1| ## NR: gi|256851495|ref|ZP_05556884.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 76 1 76 76 119 100.0 4e-26 MRNMFDAKQRFSLRKLSIGVVSVLLGFTFVSNAQVVQADTSSSTANSQNGGGEIGLLIHN RQVLHLLQQIQVIQMK Prediction of potential genes in microbial genomes Time: Wed May 25 13:47:37 2011 Seq name: gi|260196060|gb|ACQN01000007.1| Lactobacillus jensenii 115-3-CHN cont1.7, whole genome shotgun sequence Length of sequence - 4699 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 173 - 234 5.2 1 1 Tu 1 . - CDS 264 - 695 373 ## gi|256851496|ref|ZP_05556885.1| predicted protein - Prom 719 - 778 5.7 2 2 Op 1 7/0.000 - CDS 798 - 1691 287 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 3 2 Op 2 6/0.000 - CDS 1692 - 2480 883 ## COG0061 Predicted sugar kinase 4 2 Op 3 . - CDS 2480 - 3106 663 ## COG2357 Uncharacterized protein conserved in bacteria - Prom 3165 - 3224 6.1 + Prom 3075 - 3134 5.6 5 3 Op 1 . + CDS 3219 - 3839 608 ## lhv_0692 hypothetical protein 6 3 Op 2 . + CDS 3882 - 4544 521 ## LCRIS_00656 dithiol-disulfide isomerase + Term 4548 - 4583 4.4 Predicted protein(s) >gi|260196060|gb|ACQN01000007.1| GENE 1 264 - 695 373 143 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851496|ref|ZP_05556885.1| ## NR: gi|256851496|ref|ZP_05556885.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 143 1 143 143 209 100.0 6e-53 MVRKILQRYTMIISSLILIGGISYINSQLVSAATRSNSTLKNTVISRKNLESRNRDDNTA KSNNSNSSYNSTIPTSNTPQSNIEKILSPTITFPQTPTKIFFFATKLPQTGLQKSEVSLL GIIVLILTSIVGYHGFFKKNNRK >gi|260196060|gb|ACQN01000007.1| GENE 2 798 - 1691 287 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 40 286 41 280 285 115 34 9e-26 MKIFKFIVSEEDPKRLGPFLSKKKLSKQAIVNAKHNGGMLLVNHRRRFTNFTLKVGDEVL FVMGKEKVNNFLKASNKSVKIVLETDNYLVINKPAAVLSIPSRYEDKDAVVNRVMGYFAK KKSSEQAFLKPHIVTRLDRDTSGLVLVGKNAVAHSKFSELKKDVFVKEYHAIVHGNFNSE HQKGLITAPIGKIDDSVKRYVTPNGQKSVTQYEVLAQKDDASLVKLRLFTGRTHQIRVHM AHIGHPLFGDKLYGSVDNFTRQALNCSHLSFPDPFTDEKVTVEIDDPEDMAHLWQNL >gi|260196060|gb|ACQN01000007.1| GENE 3 1692 - 2480 883 262 aa, chain - ## HITS:1 COG:SPy1126 KEGG:ns NR:ns ## COG: SPy1126 COG0061 # Protein_GI_number: 15675106 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Streptococcus pyogenes M1 GAS # 2 262 12 274 278 256 49.0 3e-68 MKVAIINNSHKKTIEVVEHLKKLLAEKQITIDEHQPDVVISVGGDGTLLSAFHKYEKIVD SVRFIGVHTGHLGFYTDWRNYDIDQMVDALCTTAPSTSSYPLLELTLVMDDGRQERFLAL NEASIKRISKTLVANIYIKGELFENFRGDGICVSTPTGSTAYSKALGGAVIHPRLKALQM TEIASINNRVFRTIGSPIVIAPDEWITILPNDGHNLILIIDGNRIPVDHVNRVIYRISKQ RIHFDKFGHHHFWSRVGDAFIG >gi|260196060|gb|ACQN01000007.1| GENE 4 2480 - 3106 663 208 aa, chain - ## HITS:1 COG:lin0966 KEGG:ns NR:ns ## COG: lin0966 COG2357 # Protein_GI_number: 16800035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 204 1 204 222 237 59.0 9e-63 MTDWDTFLWPYNEAVQELKVKFRSLRQGFLTRGEHSPIEFVVGRVKTVDSIKEKMQRRII SPEVIETDMQDIAGIRIMCQFVDDIYKVVDLIHERSDMQVVEERDYIHAAKPSGYRSYHM VIKYTVFLPEGEKTLIAEIQIRTLAMNFWATVEHTLSYKYQGKYPEDVSKRLKSTAEAAY QLDEEMSAIRKEVQDAQKVFNQNKGKGQ >gi|260196060|gb|ACQN01000007.1| GENE 5 3219 - 3839 608 206 aa, chain + ## HITS:1 COG:no KEGG:lhv_0692 NR:ns ## KEGG: lhv_0692 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 206 1 202 204 197 54.0 2e-49 MSKNREIESKTLLERKVFSAILKTFPSKKSFTQINYYFDNDKETLKNNKISLRIRLYPDK AEQTMKVPAKKLCQENYHEVIEINDSLSLKVAQEIVENSLNGGVTIFENNCGKYLFDNFS DICQDLKIFSYSKTTRHLLVGPNDCELTLDETSYPDGYRDFELEIENDNPDLIKQTLNTL IQQFNFHPNSKNTNQNKIARASLHRN >gi|260196060|gb|ACQN01000007.1| GENE 6 3882 - 4544 521 220 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00656 NR:ns ## KEGG: LCRIS_00656 # Name: not_defined # Def: dithiol-disulfide isomerase # Organism: L.crispatus # Pathway: not_defined # 11 194 1 184 205 150 40.0 3e-35 MNKFVGGLETMFEVFMFVNPIGTCCYQTEQTIMKTMKEADAITRYHLIPLANMKTIQSDL IRKHKCPTNLETYNHASEETFAALKDYHAIKMAYGNKIARKYCLAVQHNINDLNKEYNTG LFKNLIQELGLSIPKIQSARMSTYLNESIAADERLAQKWHINDTPTTVIFNDEDENSGLI VEGHLLHDELLQIINGNESPDFNELSASLIRLHSSNLRLL Prediction of potential genes in microbial genomes Time: Wed May 25 13:47:58 2011 Seq name: gi|260196059|gb|ACQN01000008.1| Lactobacillus jensenii 115-3-CHN cont1.8, whole genome shotgun sequence Length of sequence - 28903 bp Number of predicted genes - 31, with homology - 31 Number of transcription units - 16, operones - 10 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 728 392 ## COG4469 Competence protein - Term 748 - 781 4.0 2 2 Op 1 . - CDS 788 - 1390 494 ## lhv_0689 adaptor protein - Prom 1486 - 1545 6.1 - Term 1513 - 1542 1.4 3 2 Op 2 . - CDS 1549 - 1947 445 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 2075 - 2134 13.8 - Term 2116 - 2155 6.3 4 3 Op 1 25/0.000 - CDS 2160 - 3896 2393 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 5 3 Op 2 . - CDS 3896 - 4162 427 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 4189 - 4248 3.5 6 4 Tu 1 . - CDS 4268 - 4450 251 ## LCRIS_00650 hypothetical protein - Prom 4497 - 4556 6.6 + Prom 4525 - 4584 4.8 7 5 Op 1 . + CDS 4610 - 6793 1607 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 6800 - 6826 -1.0 + Prom 6798 - 6857 5.7 8 5 Op 2 . + CDS 6891 - 7169 414 ## LJ0814 hypothetical protein - Term 7178 - 7229 1.1 9 6 Op 1 . - CDS 7239 - 8249 1050 ## COG2017 Galactose mutarotase and related enzymes 10 6 Op 2 4/0.000 - CDS 8280 - 9680 1124 ## COG4468 Galactose-1-phosphate uridyltransferase 11 6 Op 3 2/0.333 - CDS 9737 - 10732 1206 ## COG1087 UDP-glucose 4-epimerase 12 6 Op 4 . - CDS 10755 - 11921 1422 ## COG0153 Galactokinase - Prom 11947 - 12006 4.9 - Term 11933 - 11992 15.2 13 7 Tu 1 . - CDS 12075 - 12632 465 ## gi|256851514|ref|ZP_05556903.1| predicted protein - Prom 12657 - 12716 8.1 - Term 12695 - 12749 14.2 14 8 Op 1 . - CDS 12750 - 14321 2264 ## COG4108 Peptide chain release factor RF-3 15 8 Op 2 . - CDS 14321 - 15184 1065 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 15237 - 15296 6.4 + Prom 15196 - 15255 7.2 16 9 Tu 1 . + CDS 15304 - 15765 276 ## LCRIS_00638 hypothetical protein + Term 15775 - 15817 1.0 17 10 Op 1 . - CDS 15768 - 16244 509 ## lhv_0679 hypothetical protein 18 10 Op 2 . - CDS 16255 - 17070 745 ## COG2137 Uncharacterized protein conserved in bacteria - Prom 17286 - 17345 10.6 + Prom 17042 - 17101 6.1 19 11 Tu 1 . + CDS 17211 - 18587 1414 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Term 18601 - 18642 7.5 - Term 18823 - 18878 -1.0 20 12 Op 1 2/0.333 - CDS 19001 - 20158 1338 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase 21 12 Op 2 1/0.667 - CDS 20161 - 21372 1100 ## COG1257 Hydroxymethylglutaryl-CoA reductase 22 12 Op 3 . - CDS 21390 - 22535 1429 ## COG0183 Acetyl-CoA acetyltransferase 23 12 Op 4 . - CDS 22577 - 23533 993 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 23643 - 23702 8.3 + Prom 23613 - 23672 7.4 24 13 Tu 1 . + CDS 23702 - 23986 144 ## LBA0629 hypothetical protein + Term 23992 - 24021 1.4 - Term 23980 - 24009 1.4 25 14 Op 1 . - CDS 24023 - 24925 1200 ## COG1210 UDP-glucose pyrophosphorylase 26 14 Op 2 2/0.333 - CDS 24993 - 25853 680 ## COG1295 Predicted membrane protein 27 14 Op 3 . - CDS 25846 - 26673 1066 ## COG0024 Methionine aminopeptidase - Prom 26755 - 26814 10.5 + Prom 26665 - 26724 9.6 28 15 Op 1 . + CDS 26881 - 27327 641 ## COG0716 Flavodoxins 29 15 Op 2 . + CDS 27320 - 27823 414 ## LBA0621 putative cellwall teichoic acid glycosylation protein - Term 27790 - 27841 4.4 30 16 Op 1 . - CDS 27853 - 28287 524 ## COG2153 Predicted acyltransferase 31 16 Op 2 . - CDS 28290 - 28730 467 ## COG1846 Transcriptional regulators - Prom 28826 - 28885 6.2 Predicted protein(s) >gi|260196059|gb|ACQN01000008.1| GENE 1 2 - 728 392 242 aa, chain - ## HITS:1 COG:SPy1395 KEGG:ns NR:ns ## COG: SPy1395 COG4469 # Protein_GI_number: 15675318 # Func_class: R General function prediction only # Function: Competence protein # Organism: Streptococcus pyogenes M1 GAS # 32 203 28 200 320 81 34.0 1e-15 MYAALLNNKLVLARTEEARIQSNLIALNQEKYLCPRCKKKVILVLSEKRLPFFKHQMAQV GRQGEKEEHYRGKINLKTALIAAGFPAKEEVPLAKGELRADILVNSQLAFEIQCAPLSKG EFSHRHNLYKKVGIIDIWIVGKRHYLTNYLNQRQAIFLRFNRSWGYYYLEIDSKREYLTL KYQILQEPLTRKIRYQIKQFRIDEVGILKLWQFNPGFSQYHLNKDSQKNYLLRQIQMQTK LG >gi|260196059|gb|ACQN01000008.1| GENE 2 788 - 1390 494 200 aa, chain - ## HITS:1 COG:no KEGG:lhv_0689 NR:ns ## KEGG: lhv_0689 # Name: not_defined # Def: adaptor protein # Organism: L.helveticus # Pathway: not_defined # 1 199 27 242 246 124 39.0 2e-27 MLDLLGNKSEIQDFFYSILREVDTDHSFAGDNQPVTFQVMPNEGGLDLLITKYNKADADS IQKQLGNLLGMGNDNRESRLGPIQKLNKELGISSDSNKDIPAKEVSNQANFLFSDIDQVV QLADSLPTDKVAASLYTFKEHYLLQMNNLGNAEDVDSGNIWSVCLEFGTLADDKTLNLFK NNGKCLIKQDALADLLTYFK >gi|260196059|gb|ACQN01000008.1| GENE 3 1549 - 1947 445 132 aa, chain - ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 131 1 131 131 174 67.0 3e-44 MINLYVSSSCTSCRKARAWLNKHDVPFKERNIFSEPLTKEEIVNILRLTENGTEEIISTR SRAFQELHVNLDDLSIDQLLDLVEKNPSLLRRPIIMDDRRLQVGYNDDEIRRFLPRKVRR LELAKAQKLADL >gi|260196059|gb|ACQN01000008.1| GENE 4 2160 - 3896 2393 578 aa, chain - ## HITS:1 COG:SP1176 KEGG:ns NR:ns ## COG: SP1176 COG1080 # Protein_GI_number: 15901041 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Streptococcus pneumoniae TIGR4 # 1 563 1 565 577 720 64.0 0 MTKTLKGIAASDGIAVAPAYRLVEPDLSFTKASVDDVDQEVARFEKAVETSIHDVESVRD IAKENLGEEEAQVFEAHLLILNDPEYIGAIKQEIKDSKVNSEFALDETSQKFITIFESMT DNEYMKERAADIRDVSKRIMAHLLGKNLPNPAAIDHEVVVVAHDLTPSDTAQLNKDYVKG FVTDIGGRTAHSAIMARSLELPAVVGTDSITSDIKDGQLLVVDGLDGLAVIEPSDEEVAD YKKKGEAFLKQKAEWKKLKDAPSVTKDGKHFTIAANIGTPDDMAGVLENGAEAVGLYRTE FLYMNSSELPSEDDQFEAYKKVIEGMNGKQVVIRTMDIGGDKHLPYLPLPEEMNPFLGYR AIRISLKEDQIFRTQLRALLRASAYGRLGIMFPMIGTLAELHKAKAIFNEEKEKLVKDGV KIGDDIQVGMMIEVPAAAVLADQFAKEVDFFSIGTNDLIQYTFAADRGNEHVSYLYQPYN PSLLRLIKHTIDAAHDNGIWCGMCGEAAGDSVMFPLLLAMGLDEYSMSATSILRIRSQMK KLDTKDLEGLVDKAINESLTNEDNQKLVEDLMSKLNLD >gi|260196059|gb|ACQN01000008.1| GENE 5 3896 - 4162 427 88 aa, chain - ## HITS:1 COG:SA0934 KEGG:ns NR:ns ## COG: SA0934 COG1925 # Protein_GI_number: 15926669 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Staphylococcus aureus N315 # 1 88 1 88 88 112 71.0 1e-25 MEKRDFHIIAETGIHARPATLLVQAASKFSSDINLEFNGKSVNLKSIMGVMSLGVGKDAE VTISAEGDDAAEAIEAISDTMKKEGLAE >gi|260196059|gb|ACQN01000008.1| GENE 6 4268 - 4450 251 60 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00650 NR:ns ## KEGG: LCRIS_00650 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 60 1 60 60 77 65.0 1e-13 MDYESILNQLVDGELSEYKIEAKDAFAFQQALRAFGKRTYIKGRALRGGAIIYTATNIDK >gi|260196059|gb|ACQN01000008.1| GENE 7 4610 - 6793 1607 727 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 56 726 132 813 815 623 48 1e-178 MLCQNCHERPASIHLYTKVNGESRSLDLCQKCYQEFRASQGGNLGNENINNDNYDNNENP NMGDLFGNFNNLFGSMNGATASQMQNPQTPGRGGNGNSILDQYGTDLTALAKQGKIDPVI GRDKEIARVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQEIVDGSVPAKLQNKRIVSLN IVSMVQGTGVRGQFEQRMQRLIKELQSNPDLILFIDEIHQIVGAGNAEGGMDAGNIIKPA LARGDFQLVGATTIKEYREIEKDSALARRFQPVEVKEPSVDETIRILHGIQKRYEDYHHV HYTDAAIESAVKLSSRYIQDRYLPDKAIDLLDEAGSRMNLTIPFVDKEKIKERIDAAQQL KQDALKNEDYEKAAYYRDQIEKYDKMKDQKVDPDKSPVITDKIMNKIVEEKTGIPVGDIQ KQEENQLQNLASDLKAKVIGQDKAVEQVARAIRRNRIGFNKSGRPIGSFLFVGPTGVGKT ELAKQVALKMFGSTDAMIRFDMSEYMEQYSVSKLIGSAPGYVGYEEAGQLTERVRHNPYS LILLDEIEKAHPDVLNLFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGQGIKNASVGFT AEANPSKESTRSSMSQFFKPEFLNRLDDVIEFNPLSKEDLLKIVDLMIAKTNSMISDQGL HIDVTDAAKEKLVKEGYEPSLGARPLRRTIQEEIEDKVADFKLDHANVKNFLADLVNDEI TISAKES >gi|260196059|gb|ACQN01000008.1| GENE 8 6891 - 7169 414 92 aa, chain + ## HITS:1 COG:no KEGG:LJ0814 NR:ns ## KEGG: LJ0814 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 92 32 123 123 110 65.0 1e-23 MHLIDVTNTYSDLVQNQLNSTNAQYIKVYSLGNSSVVYTETDADIEIVIENHDRKIKDEE VEFLIRRLIRDDRSYDITIDKTKKVIAITCRK >gi|260196059|gb|ACQN01000008.1| GENE 9 7239 - 8249 1050 336 aa, chain - ## HITS:1 COG:lin2619 KEGG:ns NR:ns ## COG: lin2619 COG2017 # Protein_GI_number: 16801681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 6 307 9 319 353 181 33.0 2e-45 MDIKVEKYGQYCEQNLYEFTLVNDQGLVVKLLNYGATLEQVLMPGQAGLQNLVLSLPGRL DYSKERNFLGGTVGRVVGRIRGHIWHCGSKDVVLAMNEGKNHIHGGNDGLDQQVYNFRIN KSPEKIEVIFTFLDSAGHNSYPGNLKLEVKYILNNDNQLKYQIRAKSDETTLFNPTNHTY FALDQPNNIFDTTLTIAADYFKPLDKEHLPYEGWLSVDNTVFDFRKGQKLANVINSTDKQ IISEGGLNHPFLLTNGDKFAAKLETKNHRVTMTTTAPSMVVYTANHFDGTGVAKNIDKFA GIALECQYPPVSGNDLSAITLLAGEDFYLENIWNFE >gi|260196059|gb|ACQN01000008.1| GENE 10 8280 - 9680 1124 466 aa, chain - ## HITS:1 COG:SP1852 KEGG:ns NR:ns ## COG: SP1852 COG4468 # Protein_GI_number: 15901680 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 466 20 488 493 536 55.0 1e-152 MDKVYLTNRLLNLIGDNALSLSAAKDFLANLDLLVKEAVANKKIADTLAAKQILEAQIMD LATPSPSQANHIFWDKYQAGAKEATNWFFNLSKANNYIQTRAIAKNIVFPAKTEYGDLEI TINMSKPEKDPKDIAAAAKLKKAGYPACALCMETEGYAGRNNFAARANHRIIRFLLGGKT WGFQYSPYAYFNEHAIFLDENHEPMVINQTTFSNLLAIVDMFPEYFVGSNADLPIVGGSM LSHEHYQGGRHIFPMAKAPIEIKLQLADYPEVKAGIVKWPMSVIRLISHDKDELINAAEH IRKIWDNYTDETVDVRAVTNGIRHHTITPIAQKIAGKYQLDLVLRDNQTSNKYPDGIFHP HADVQHIKKENIGLIEVMGRAILPARLKTEFNEVKKYLLNQPNQINPIHKEWAEQLRQKY SWSESNSDKQLQLAVGEVFAQVLADAGVFKRDEVGIAAFKRFCHQL >gi|260196059|gb|ACQN01000008.1| GENE 11 9737 - 10732 1206 331 aa, chain - ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 327 2 328 328 432 61.0 1e-121 MTIAVLGGAGYIGSHTVKRLLATGEDVIVLDNLITGHRRAVDKRARFYQGDIRDFQFLSS VFSQEKVDGIVHFAAFSVVPESMKNPLKYFDNNTCGMVTLLEAMNQFGIKRIVFSSTAAT YGEPKQIPIKETDPQLPTNAYGESKLAMEKIMHWADLADGLKFVALRYFNVAGAMPDGSI GEDHNPETHLIPIILQVAAGKRPSLQIYGNDYPTKDGTNIRDYVHVLDLADAHVLALKYL EAGNSSTAFNLGSATGFSNMEILQAARKVTGEPIPASIGPRRLGDPSTLIASSDKAKELL GWKPQFDNIEKIIETAWKWHENNPEGFGDRN >gi|260196059|gb|ACQN01000008.1| GENE 12 10755 - 11921 1422 388 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 1 387 5 391 392 417 56.0 1e-116 MKSTNVKKGFIEQFGKAAEHTFFAPGRINLIGEHTDYNGGHVFPCAITLGTYAAVGSNDQ DAFLLYSDNFPDVGVVKITFADLAKEKQGLWTDYFQGMAQVMQAAGLDYSHGLNIYISGN LPDGAGLSSSASLEMLVATILNNLFGGKFTPLELVKFGVRVENDYIGVKSGIMDQFAIEM GKENQAMLLDTNTMQYDYLPVEMGDNVIVIMNTNKRRELVDSKYNERRSECEQALARLQK ELNISSLGDLTEDEFDENTYLIYDPILIKRARHAVFENMRTLNAAKALQAGNLKGFGKLV SASGVSLAYDYEVTGPELDTLVTTALKQAGVLGARMTGAGFGGCAIAIVNLDNVEDFINE VGQVYRQKIGYDAHFYVANIADGAKQLS >gi|260196059|gb|ACQN01000008.1| GENE 13 12075 - 12632 465 185 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851514|ref|ZP_05556903.1| ## NR: gi|256851514|ref|ZP_05556903.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 185 1 185 185 265 100.0 7e-70 MNEERVTTLKTKLPNLIYLVLAFFVQLKLATYLRQYTPNNSLQHLLFALYIFALVVTIIL TASWASNLNKKQARIIVALEFMLIIASLILPSYKPSSVFLELLLFYGLIPLLGQGIAVAN LNKDMNKTKIVRPVLLVVGLVVSVAMIYIYSLPLSYAISVKLAYIWGAIILLLYGMCWRM NTKNK >gi|260196059|gb|ACQN01000008.1| GENE 14 12750 - 14321 2264 523 aa, chain - ## HITS:1 COG:L0369 KEGG:ns NR:ns ## COG: L0369 COG4108 # Protein_GI_number: 15672331 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Lactococcus lactis # 5 523 3 521 523 729 68.0 0 MAEKLLDQVNKRRTFAIISHPDAGKTTITEQMLLFGGVIRSAGTVKARKSGHFATSDWME IEKKRGISVTSSVMQFEYEGKRINILDTPGHQDFSEDTYRTLMAVDAAVMVIDSAKGIEP QTKKLFKVVRKRGIPIFTFMNKLDRDGRDGLDLVAELEDILGIEGVAMNWPIGSGKSLKG LYDIQNNRVELYRKDGDDRFIDLDSEGKLPESEELSHDSLYLSALDDIELIKEAGNTFDE ERVLAGEQTPVFFGSALTNFGVETFLKSFVDLAPAPSSHKVNDDEELKPDDEEFSGFIFK IQANMNPNHRDRIAFVRIGSGEFEKGLDVTLARTGKAVRLNNATEFMSSERVQVSKAVAG DIVGLYDTGNFQIGDSIYAGKRKIVYEPLPEFTPELFMRVTAKNVMKQKSFHKGMNQLVQ EGAVQLYRNFNTDEYILGAVGQLQFEVFKFRMQNEYNSEVEMTSLGKRVARWIDPEQLDP KMSSSRNLLVKDRYDKPLFLFENEFAMRWFHDKYPDVKLTEKL >gi|260196059|gb|ACQN01000008.1| GENE 15 14321 - 15184 1065 287 aa, chain - ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 6 273 163 432 449 228 45.0 7e-60 MSSDPAASNFFENLRKKFVGEEESEPLEQLEQEIEKLHEDKSINDTVYSMFTGILNFQGK MAREVMVPRTDAFMVDINDNFQDNLDDILHEPYSRIPVYDQDKDIIVGVIHIRTVLRKAR KLGFDKLDYQDVMYKPLFAPETIDLGELLVEMQKRQQQIAILTDEYGGVVGLATIEDLIE EIVGDIDDEVDTAEVLFTKLSDNKYVIYGKMTLDDFNEEFETNLEMEDVDTVAGYVITKL GMIPAKGEKLSVPLDNGMVLTTRRMKGSRILTLLLTIPNKKKEEIED >gi|260196059|gb|ACQN01000008.1| GENE 16 15304 - 15765 276 153 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00638 NR:ns ## KEGG: LCRIS_00638 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 153 1 153 153 195 67.0 4e-49 MEKKRVYLVFVFLLLIPYLCSLAVIGIGYNALVLHSSSIWRSTIGALMGSFIMFAIKATI QRPLDLMANQINEGLFEQFLRFFSVRRRPWLQLANIVLDFILCYIATFLVRTFLNLDQIV GNSVGITLIVMFVSTCIGAYLEYDNLSIDPGQH >gi|260196059|gb|ACQN01000008.1| GENE 17 15768 - 16244 509 158 aa, chain - ## HITS:1 COG:no KEGG:lhv_0679 NR:ns ## KEGG: lhv_0679 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 158 1 160 160 165 55.0 5e-40 MKTTIDELFFYGRPFPASLIDQNRSFSEQNMMMENDEEFANFLKENNLENNRASLVVFNP DSFMYWYGAVSDHELTKSHGMLKMNLPKSEVAVKERNGDLANLSTPLNSSIPSFLKDVTA EGIKVYENLGDSPLPYVLQKVDLDTKKLTQVLYLKVSE >gi|260196059|gb|ACQN01000008.1| GENE 18 16255 - 17070 745 271 aa, chain - ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 261 1 262 264 128 33.0 1e-29 MSKITKVSAQKRSGRYNIFLDDKYAFSASERTLTEFRLFKGSELTDKQIEQIKQFDTDAK ASELAARYLSYQIRTVDEVRQYLVKHELSPEAIDSAINEFINLGYLNDFEYARLFIKNDL AVGQDGPASVAQKLRLKKVPDNNIEDALAEVSSEDWIEVGKRLIKSLKNQLGKIAFNEVK KKMTFKLLQHGFRTDLVQVIIDDLDLVNEETQEDEALKKQGIKAYKRFKRLDESQRKYKI RTYLYSHGFSNNDIDRFLAGEVISLSELDEY >gi|260196059|gb|ACQN01000008.1| GENE 19 17211 - 18587 1414 458 aa, chain + ## HITS:1 COG:SP1901 KEGG:ns NR:ns ## COG: SP1901 COG2265 # Protein_GI_number: 15901728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 19 453 1 433 436 360 44.0 2e-99 MVYQKKDLKKDIIITIKRLGINGEGIGYYKKKIIFIPGALPDEVVVAKIIKTHPGYIEGE LVRIKEKSPNRVAFPDKVDPEIGGLELAHLSYDKQLEFKKDIVLESLRKYHPRGYQKYKV KNTIPAKENWHYRAKAQYQLEFSKGKTKLGMYTPNSRRLIDLPEMPTQSKNTQKTERLIK KLIDKYHLPVANWRKHFDGIKTIVVREAVSTGEMQVTFITIGKKINGLKKLAQEVMKLDN VVSVFQNETDWNNPQVWGNKTVKLAGKNQIIEHILDKKFALSPRAFFQLNPEQTEILYSE AIKLLNLTPDQVLIDAYSGVGTIGIIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNTE YLQGSVEKILPQLKNSGVPIDALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQ DLVMLSEVYDVRVIENVDMLPQTARCEAIAKLVLRKEN >gi|260196059|gb|ACQN01000008.1| GENE 20 19001 - 20158 1338 385 aa, chain - ## HITS:1 COG:lin1454 KEGG:ns NR:ns ## COG: lin1454 COG3425 # Protein_GI_number: 16800522 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Listeria innocua # 1 385 1 388 388 351 47.0 2e-96 MKVGIDKIGFYTPNKFVDMVDLAEARNVDPGKFLIGIGQNKMAVADKSQDAVSMAINATS EYIDEIDLEKLGLLVFGTESSVDQSKSASLFVKKALNLPKNIRTFELKEACFGLTAAILT AIDYVRAHEDKTAIVIGSDIARYGVATPGEVTQGAGSISLLIKKDPSILEIDSETSMYSD DIDDFWRPNNFKCALVDGKYSTNVYLDFFKNCFEDYTQKQNLKTSDFEALLFHLPFTKMG QKALKLAIEGQEPETCARLLDKFVASATYSKEVGNIYTASLYMSLLSLLEVDQPKAGSLI GLFSYGSGAMAEFFTGRLVEGYEKQLYPAKHKELLENRKKLTVSEYEEIFNDSLKDLAAS EEINSDANGWYFAGTNENIRQYSKK >gi|260196059|gb|ACQN01000008.1| GENE 21 20161 - 21372 1100 403 aa, chain - ## HITS:1 COG:SP1726 KEGG:ns NR:ns ## COG: SP1726 COG1257 # Protein_GI_number: 15901559 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Streptococcus pneumoniae TIGR4 # 29 399 46 423 424 243 40.0 6e-64 MSASERRESLLQKGIKLNKVDYDLLAELDTLSENVIGKLTLPLSILQVAVVNGKSFQIPM ATEEASVVAAANHGLNIFNQNGGAIAKSERTGIWGQLVFKVEKFSLASFKSKELSYLNAA NQEFASLVKHGGGVKKIVSELKDNLLFLRVLVDPAESMGANRTNAILEFLGQKISQEFAV EKLYAILSNYPSQFTHAKVSLAFASLTKTQDKKIGEEIAQKVALLSKIGKQDSYRAVTNN KGIMNGVDAILLATGNDFRAVEAACHQAASLSGTYQSLSSWQIEDGKLVGEISLPLAIGV VGGSIKSRSDVQVAYNILGQVSVSELAELIATVGLANNLAALLAISTVGIQKGHMNLQIR NVLKNLSATDNEKKAVKQLMQEQKRYGETDAKNFLQKIREENS >gi|260196059|gb|ACQN01000008.1| GENE 22 21390 - 22535 1429 381 aa, chain - ## HITS:1 COG:HI0771 KEGG:ns NR:ns ## COG: HI0771 COG0183 # Protein_GI_number: 16272712 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Haemophilus influenzae # 1 380 1 393 393 326 47.0 4e-89 MQNIYIVAAKRTPFGRYRGQLAAFNAVELGTFALKDALMAANLRSNELDALFMGNVLSAG LGQNMARQVAINSGMKNESVATTINEVCGSSLKAVRLAQAQMLIGDLKLVAVGGSESMTN APLLAKKSEKDNPHFIDSMLYDGLTDAFSNKLMGNTCENVAIKYGISRQQADEFSVDSHK KAAIAQEHGFFDQEISPVVDLSYDENVRPDSSVEKLASLKTVFKADGVATAGNSSSLSDG ASMLILATEDKVKELNLKPLAKLSAYAEVGLDPQIMGFGPKVAIEKLLQETGQKLADIDL FEINEAFAATSLAVEKELHLDHNKVNIHGGALALGHPLGASGARILGTLAHSLISENKER GIASLCIGGGLAIAFEIERVK >gi|260196059|gb|ACQN01000008.1| GENE 23 22577 - 23533 993 318 aa, chain - ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 13 318 8 308 308 278 44.0 7e-75 MMEKNAKKSKRLKWLGGIFAFIVLAFLGAGMYFYNVAVVPGHKTFLSSSKPLTKSDPLYQ EKLWYKKATKKHLYMMSSDNKLRLDANYIKNGNSQKTVIILHGYMNNKDGMGEYAALFHS LGYNVLLPDARGHGQSQGNYVGYGWMEKDDVKKWTQKLLKDNPKQDIVIFGVSMGGATTM MTSGLKLPSQVKAFIEDCGYTNAKNEIEHEAQALYNMPTFPRFPLVEVLSGITRLRAGYF LGDADSIKMLKKNTKPMMFIHGAKDNFVPTEMVYKNYRASNGPKQLWVVPGASHAKSFAT HPQEYKAKIKAFLNKYIK >gi|260196059|gb|ACQN01000008.1| GENE 24 23702 - 23986 144 94 aa, chain + ## HITS:1 COG:no KEGG:LBA0629 NR:ns ## KEGG: LBA0629 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 94 15 108 108 77 41.0 2e-13 MRLIDFLQVSKDLTGQTQFYLKQESQLLPLTKLSLTSTHCFLYSGTTPLTKDKIFNIIAR TKNKQIELKIIINNHEFPVYGLQIIVDKKIAILM >gi|260196059|gb|ACQN01000008.1| GENE 25 24023 - 24925 1200 300 aa, chain - ## HITS:1 COG:L177590 KEGG:ns NR:ns ## COG: L177590 COG1210 # Protein_GI_number: 15673321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 2 298 12 309 313 390 68.0 1e-108 MKVRKAVIPAAGLGTRFLPATKAMPKEMLPILDKPTIQFIVEEAKASGIEDILIVTGKSK RPIEDHFDSNPELEANLEEKHKEKLLELTQSITNLGVNLYYTRQPHPAGLGDAIYRAKSF VAGEPFVVLLGDDLMSDKVPLTQQLINRYNETHASTIAVKRVPHEDVSKYGIIAPDGEIT NGLYNVKSFVEKPAVDKAPSNLAIIGRYLLTPEIFDILGKQKPGAGGEIQLTDAIDTMNK TQRVFAHVFNGERHDVGNKEGYLETSIEYGLTHPETKDALRAYILDLAKKLEAEKKPNKK >gi|260196059|gb|ACQN01000008.1| GENE 26 24993 - 25853 680 286 aa, chain - ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 275 16 276 289 116 27.0 6e-26 MIKKIDWRQFFKIFSKRMSRGEINQGSIVIAYYLLFSMFPIIIIAGNIMPLFHLKPEVVE EYLIYGLPTKVADFIMPIVKSVLQKQSTGYISFGILIALWSFSSLTNAMRISMNRIYGVR QQELRFSFGRKLLERGVVVLITGLMIILLTVLTIALTFGQEILDSVKAFLGINYLGIESI FTYKWLVLLAVMLVVIAYFNFALPNVKKRKRAIWPGVFINLVGWAGLSYLFGLYLSHFKL SFENYGIVGTFIIFMLWLNLSSLLFLLGVCVNATIDELKHGDAKIR >gi|260196059|gb|ACQN01000008.1| GENE 27 25846 - 26673 1066 275 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 261 1 252 252 275 54.0 8e-74 MITLKSTRELKGMQKSGRLLASLFEALRDVIKPGISTWDIEEFAQKFMKERGGRLSEQGF EGYKYGTCISVNDEIAHAIPRKNLILQEGDLVSVDVTCNLDGYETDSCTTYPVGKISEED QRLLDVTKKAMYLGIDQAQVGNRIGDIGAAIQHYVEDENGFGDVRELIGHGIQPTIHEDP EVPHWGKAGHGLRLKEGMTITVEPMLEAGGDWRIMQKTVDDPNDDWVYYVTPDGSKAAQF EHTFAITKDGPKILTLQKPYDGLEKYLPHFDELDD >gi|260196059|gb|ACQN01000008.1| GENE 28 26881 - 27327 641 148 aa, chain + ## HITS:1 COG:SP1297 KEGG:ns NR:ns ## COG: SP1297 COG0716 # Protein_GI_number: 15901157 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pneumoniae TIGR4 # 4 145 5 145 147 112 46.0 2e-25 MQVKIVYASMTGNDEDMAEILEEDLQDAGFDVDSSDVSFTDASDYLNADICVFVTYTYGE GKMTDELEDFYDQLKNLDLSGKKFLVMGSGDKTYKDHYCENVFDFEKVFLACGAEEVIKP LTVENAPDDDDIAKIDEIADELAEKFNG >gi|260196059|gb|ACQN01000008.1| GENE 29 27320 - 27823 414 167 aa, chain + ## HITS:1 COG:no KEGG:LBA0621 NR:ns ## KEGG: LBA0621 # Name: gtcA # Def: putative cellwall teichoic acid glycosylation protein # Organism: L.acidophilus # Pathway: not_defined # 1 166 8 173 174 182 59.0 3e-45 MVKSDRTLLREQGRKLLRRHRNLYVYMFFGFVAALINTIVFVVLHNNFKVVLVLANTLAF IISNLASFFFNHYAVFTHHVDKSKSIWHKLIAFFTFRIISIIPDTLIMLVGLSVLRWNTV LVKLIDQLLVGIFNYLTTKAVFQKNDHFIRERIRQYVIESKQKNKDH >gi|260196059|gb|ACQN01000008.1| GENE 30 27853 - 28287 524 144 aa, chain - ## HITS:1 COG:BH2982 KEGG:ns NR:ns ## COG: BH2982 COG2153 # Protein_GI_number: 15615544 # Func_class: R General function prediction only # Function: Predicted acyltransferase # Organism: Bacillus halodurans # 2 140 3 145 155 96 32.0 1e-20 MWYVKKWNELTPKEIWQILDLRISTFVVEQKRIYHEIDKTDLSALHIFAIKNDKIIAYAR IFLNEKYVSFGRVVTSEVVRGHGYGMKLLKKIMATIKDYFPGKEIEIEAQEQVKDFYKKI GFKTIGTPFIFESTPHIKMVHERL >gi|260196059|gb|ACQN01000008.1| GENE 31 28290 - 28730 467 146 aa, chain - ## HITS:1 COG:mlr8209_1 KEGG:ns NR:ns ## COG: mlr8209_1 COG1846 # Protein_GI_number: 13476782 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mesorhizobium loti # 3 145 13 155 160 80 32.0 8e-16 MLNHKEINIIRKFNRQYVIALGVLNKKIFKTDLSWPEGRILEEIAEEDDITPIQIVHKLQ VDKGYTSRIISQLEKKMLIEKIPDSQDRRSIKLVLTAKGLEAYKSIDMRSNDQINNLIED LSDSQQIELFESIERVNQLLFERKEK Prediction of potential genes in microbial genomes Time: Wed May 25 13:48:31 2011 Seq name: gi|260196058|gb|ACQN01000009.1| Lactobacillus jensenii 115-3-CHN cont1.9, whole genome shotgun sequence Length of sequence - 20789 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 10, operones - 6 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 15 - 1157 1743 ## COG0381 UDP-N-acetylglucosamine 2-epimerase - Prom 1357 - 1416 8.1 + Prom 1137 - 1196 4.5 2 2 Op 1 . + CDS 1226 - 1405 123 ## gi|256851533|ref|ZP_05556922.1| predicted protein + Prom 1418 - 1477 6.0 3 2 Op 2 . + CDS 1572 - 1868 399 ## LGAS_1868 hypothetical protein + Term 1876 - 1927 16.2 - TRNA 1929 - 2002 75.2 # Arg CCT 0 0 - Term 1862 - 1913 16.2 4 3 Op 1 . - CDS 2052 - 3326 1091 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Term 3332 - 3369 1.3 5 3 Op 2 . - CDS 3392 - 4618 1512 ## COG0513 Superfamily II DNA and RNA helicases 6 3 Op 3 . - CDS 4618 - 5331 632 ## FI9785_664 hypothetical protein - Prom 5403 - 5462 7.1 + Prom 5360 - 5419 6.4 7 4 Tu 1 . + CDS 5450 - 6745 1338 ## COG0531 Amino acid transporters + Term 6751 - 6797 3.5 - Term 6739 - 6785 7.3 8 5 Op 1 . - CDS 6794 - 7357 858 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase - Prom 7383 - 7442 4.4 - Term 7408 - 7437 -0.2 9 5 Op 2 . - CDS 7449 - 8789 1376 ## COG1253 Hemolysins and related proteins containing CBS domains 10 5 Op 3 . - CDS 8856 - 9512 783 ## COG0778 Nitroreductase - Prom 9543 - 9602 7.1 - Term 9587 - 9622 7.1 11 6 Tu 1 . - CDS 9637 - 12006 2840 ## COG3957 Phosphoketolase - Prom 12044 - 12103 7.0 12 7 Op 1 . - CDS 12144 - 12869 626 ## COG2188 Transcriptional regulators 13 7 Op 2 . - CDS 12885 - 13808 1052 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 13831 - 13890 9.6 - Term 13840 - 13884 8.0 14 8 Op 1 . - CDS 13900 - 14592 881 ## COG0120 Ribose 5-phosphate isomerase 15 8 Op 2 . - CDS 14592 - 15515 1048 ## COG0524 Sugar kinases, ribokinase family 16 8 Op 3 . - CDS 15582 - 16388 743 ## COG1085 Galactose-1-phosphate uridylyltransferase - Prom 16461 - 16520 5.9 + Prom 16318 - 16377 5.5 17 9 Tu 1 . + CDS 16613 - 17908 1690 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 17945 - 17977 2.5 - Term 17924 - 17972 5.9 18 10 Op 1 21/0.000 - CDS 17984 - 18607 806 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 19 10 Op 2 1/0.000 - CDS 18620 - 19669 1012 ## COG0306 Phosphate/sulphate permeases 20 10 Op 3 17/0.000 - CDS 19748 - 20410 780 ## COG0765 ABC-type amino acid transport system, permease component 21 10 Op 4 . - CDS 20426 - 20686 262 ## COG0765 ABC-type amino acid transport system, permease component - Prom 20729 - 20788 4.0 Predicted protein(s) >gi|260196058|gb|ACQN01000009.1| GENE 1 15 - 1157 1743 380 aa, chain - ## HITS:1 COG:lin2681 KEGG:ns NR:ns ## COG: lin2681 COG0381 # Protein_GI_number: 16801742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Listeria innocua # 1 379 1 377 379 479 62.0 1e-135 MKQIKVMTVFGTRPEAIKMAPLVLKLKSDARFEEVTVVTAQHREMLDQVLDIFKIKPDYD FNIMHKNQTLADITTKVMTMLTDTIKKEKPDIVLVHGDTTTSFAASLATFYEQTTLGHVE AGLRTWNKYSPFPEEMNRQLTDVLSDLYFAPTSLSKQNLLKESHPADNIFITGNTAIDAL HETVQKDYHHDVLDEIKPGNRVILVTMHRRENQGEPMRRVFKVMKQVVDSHDDVEIIYPV HLSPRVQAVAKEVLGGDPRIHLIDPLDVVDFHNLAQRSYFIMTDSGGVQEEAPSLGKPVL VLRDTTERPEGVEAGTLKLVGTEVDKVRTEMVKLLEDKNAYEEMANAKNPYGDGHASDRI MDAIAYYFDKENTERPAEFE >gi|260196058|gb|ACQN01000009.1| GENE 2 1226 - 1405 123 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851533|ref|ZP_05556922.1| ## NR: gi|256851533|ref|ZP_05556922.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 59 1 59 59 85 100.0 1e-15 MDLRFFYLFISGFLITIGSFCSVFGVAEKSTLKKWILISTGLICWGIVAILLIAKIVQY >gi|260196058|gb|ACQN01000009.1| GENE 3 1572 - 1868 399 98 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1868 NR:ns ## KEGG: LGAS_1868 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 95 1 95 99 95 69.0 5e-19 MNKLVRDKIPEFVTNAKFRKLNQDEILPALKNKIVEEANEVKDATSEEKLIEELADVYTV LKAFLDFKGITEEELLKVVNDKKAFKGDFSKFLFMEKS >gi|260196058|gb|ACQN01000009.1| GENE 4 2052 - 3326 1091 424 aa, chain - ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 7 416 25 451 454 325 42.0 2e-88 MAKWRWLVALRDAFISVMPISIVGSLTVLIPGLINAAKTELGLGAVEYALTPVINISNLI YQGTFQLFSLYFALAWGYQLARSFEVNRLAGAITSLGCYLMSIANVVKLNINGDEVSIKN AFNTSQLSSLGLFTSLIFGAVGLSIFILMTKARLTLRFSSYMPHAEEAAFIALIPMIISL SIVGAINYIFQMVTGTYFGNWLLNTIQNPLTKMGQGFGIVLLITFLLHAFYFFGINGMSV LVPVIDSIWLTPQNANLTAVKSGHVVHYLWTRNSFDVYSWIGGTGDTLVLILLILLISKR SDFRTLAKIAIGPGFFNINDPIVWGLPLVLNPLYLIPFILAPLANVTLAYWATAWHLVEP VSTSVPNVIPPFLNAFLATNYDWRALVLVAVNVIVAILIWLPFVLAGERIAKEQEKHSLF SFEY >gi|260196058|gb|ACQN01000009.1| GENE 5 3392 - 4618 1512 408 aa, chain - ## HITS:1 COG:lin1833 KEGG:ns NR:ns ## COG: lin1833 COG0513 # Protein_GI_number: 16800900 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 12 407 16 416 442 199 32.0 8e-51 MYSKEIQAILTKEGKKSPTLIQKASYESLKSGANVIGLAKTGTGKTLAYSLPLLETTKPG SDASMVIFEPTTELAIQTRNAIRPYVLALGLNVLALVGSGNRSRQIEQLKKKKPEVLVVT PGRFFDLFSDNKIKLNKIQKLVIDEADDILEFTKLELLSSLGQNLPTTSQVVLFGATESS VTQEAEELFATNFFLIDVRPEQKSPVEHYFLKVTNRYKIQFLQRLVKLDGFKGILFFDSN ETLEKFARIFSHSQTKFDLLTNNQPKTRRQKAINDLVAGKTRLLLATDLAARGLDIPKLT YVVNYELPEDENTYLHRAGRTGRMGHDGFVVTLGDDHDLRDMRKLLTGIDLKQVYFKGFG LSTEKPKKTEKKQLEKAVSSEVKKAKKHHKKRKRNQKNKGYHPRKEKK >gi|260196058|gb|ACQN01000009.1| GENE 6 4618 - 5331 632 237 aa, chain - ## HITS:1 COG:no KEGG:FI9785_664 NR:ns ## KEGG: FI9785_664 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 233 1 231 236 230 48.0 3e-59 MPHFRHRSTLPLIIISLFLVIGALLFAYRTLPKRTTLPTGSNLSVIGVKLDQYRASVDLH KLQAAGVSFVYLRATQGKSYFDDDYERYRSQIQGTNLAFGSVLYFSDESSVRAQYKYFNK KTANNTGSLPILLEAAPGSDSNKLAFWNHMGQLAKLFLKDGKSVMVQGDIKYKKYFPAAT KFMSTASQAPDKLQYSFWRYTNKGHIKNVKAMEYDVEMYAYNGTMGQYKQLYGDLTQ >gi|260196058|gb|ACQN01000009.1| GENE 7 5450 - 6745 1338 431 aa, chain + ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 429 7 437 440 330 44.0 3e-90 MKKEITFTQGLATLVGSVIGAGVFFKIGTISQQTNSAGLTIFVWILAGFLSLASGLTIAE VAAELPVNGSIQYLEYTYGSIWGFLFGWAQIIVYFPAEAGASSSILGTQASNLFGNKIAA LPISLCMITFIFLTNLLGTKFSSKLQSVVTVIKVIPLILIIIFGLMAPEQHFSFTGFASK NAVPLVTAISGGLLSALFAFDGWVSVTNLAGDLKNPQKDMAKILIWGLGIVTAIYVLVNF VFLKTLPFNSIYGNQNTAFNTSIKLFGNMGGKLVTIGILISCYGAANAFMLTGMRAPYIL AQNNLLPFSHQFKQVNKKTGVPVLGAVTIWLITMAMISLGNFDILTDMLVFVMWFFTIML TLCQPILRRRKPNLNRPFMVPFYPITPIIALAGGIFIIIMTVINQFWLSLIGSGLTVLGL PIYFYKKKQNK >gi|260196058|gb|ACQN01000009.1| GENE 8 6794 - 7357 858 187 aa, chain - ## HITS:1 COG:BH0084 KEGG:ns NR:ns ## COG: BH0084 COG0634 # Protein_GI_number: 15612647 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Bacillus halodurans # 1 183 1 179 179 170 48.0 2e-42 MRDNIEDILESTLFSRDDIHEMCVRLGKQLTEDYAGKEPVLVGALTGAIFFMTDLAREMD VRCKMDFIDVSSYGNGFESSGKVKLVKDVHTDLTDKDVLIVEDIVDTGHTMKFMKQHFLS LGARSVKCVALLDKPSRRVDDVVVDYYGSEVGNQYVVGYGLDFYNMFRNIPYIGVVKPEV IQAYANK >gi|260196058|gb|ACQN01000009.1| GENE 9 7449 - 8789 1376 446 aa, chain - ## HITS:1 COG:L84992 KEGG:ns NR:ns ## COG: L84992 COG1253 # Protein_GI_number: 15673816 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 6 427 1 419 430 234 31.0 2e-61 MDTSQIVTNLVATLIIFGFATFFVISEFALVQTRPSQLEDMITNKEGNLKKLKRALHMVH NLNEYLSTTQVGTTLVGVVLGWFSTDTLSELIIRGLKFSPLGESLAKSVGAVLGVLLLTY LEVVFTEIVPKNIAIDMPVKMLMVIVTPLKCFHTLVYPFVWILNTSSNGVLKLMGFKEAA EENEIYSQSEIIKLSRLAVTGGALDKEDLKYMERAFELNDKVAKDIMTDRTRLTVLDATD TVKTALKLYLDEGFNRFPVVRDNDKDDVVGYVYAYDIVEQSNEGNNASLSRLIRAIITVP ESMPIQDILQLMIQKHTPIVLVVDEYGGTSGIVTDKDIYEELFGSIKDEIDDVSDEYIIR DKDGKVRVSGKTTLYDFERFYHEKLKAFQDSDIITIGGYMMEHYPDLKKGDSVTVEGYKF EVAEIEQGFMRWFNVEKLNNNSKTTE >gi|260196058|gb|ACQN01000009.1| GENE 10 8856 - 9512 783 218 aa, chain - ## HITS:1 COG:CC0324 KEGG:ns NR:ns ## COG: CC0324 COG0778 # Protein_GI_number: 16124579 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Caulobacter vibrioides # 1 212 1 213 220 89 29.0 5e-18 MDFEEVFNKERATRKFSTRKVDDELIKEIIKKAQQSPSLLNSQPWRAYAITGGALLKLKR ENKAYIARKAPVSEDFSTMLSIDWSTFPSQNMSNMGAFVTYFLHNKTELFENANNNMFYA PAIIFLTIPKKSPAWSVFDLGIFAQSIMLLAINRGLDTMPAHSLVAYPDLIRKYTNIPDD EAIGMAIAIGYADKAAEVNSPTYIPGRVPFDKIFKLIK >gi|260196058|gb|ACQN01000009.1| GENE 11 9637 - 12006 2840 789 aa, chain - ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 7 785 15 794 796 940 57.0 0 MAVNYDSQDYLRSVDAYWRAANYLSVGQLFLMKNPLLKTELKAEDVKPKPIGHWGTIVPQ NFIYAHLNRAIKKYDLNMFYIEGSGHGGQVMVSNSYLDGSYTERYPEITQDEAGMTRLFK RFSFPGGVASHAAPETPGSIHEGGELGYSLSHGVGAILDNPDVIAAVEIGDGESETGPLA ASWFSDKFINPIPDGAVLPILQINGFKISNPTIVSRMSDSELTQYFEGMGWKPYFVNVHG LSHMEAHELMAKELDKAIEDIKAIQKHARETGDDSMPQWPMLVLRAPKGWTGPKFDLDGN PIENSFRAHQIPIPVDQEHMEHKDMLIDWMKSYKPEELFNEDGSPKDIVLENTVQGDQRM AMNPVTNGGINPKRLHLPDWRNYAIDFDKPGSVEKQDMAEWSKYLNEIANLNPTNFRGFG PDESKSNRLFTILDGQKRQWMEDIEEPNDEDLARSGRMIDSQLSEHQAEGWLEGYVLTGR HGFFATYEAFGRVVDSMLTQHMKWLRKAKEQYWRHDYPALNIVDTSTVFQQDHNGYTHQD PGLLTHLFEKNRPDLIHEYLPADTNSLLAVSNKAFADRECINVLVTSKQPRPQWFSKEEA QRLVENGLSYIDWASTDEHAEPDVVFASTGTEPTLETLAAIDLLHKNFPELKIRYINVLD VMKMQSQRKNPNGLSDEEFDRLFTKDKPVIFAWHGFKPMMESIWFDRHNHNVSIHGYEEN GDITTPFDMRVLNEIDRFHLAKDAVEHLDLPAAGFIDEMDRLLSKHHTYIRDNGKDIPEV TEWKWKGLN >gi|260196058|gb|ACQN01000009.1| GENE 12 12144 - 12869 626 241 aa, chain - ## HITS:1 COG:SP2020 KEGG:ns NR:ns ## COG: SP2020 COG2188 # Protein_GI_number: 15901841 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 236 5 236 242 128 33.0 9e-30 MTDFVYRAVMRDIKQNILAQKYEDMRLPDERSLASHYQVSRSSMKRALELLAQQGIIFKK RGSGTFINPLYLKNQALFRYEGSNLGLTDSFKVPGKEQKIKLLEFKVINASKELAQDLFI NESDFVYQFKRLRLLDNQPFLIETGYLPIKIVPELTPEILKDSLFNYLEDTQNKTVTRSF LNITVEPSNSEDQSELNLQANEPVGVMEGIFFLDDGTPFEVSNMRIHYKYMRYNSFVNLN Q >gi|260196058|gb|ACQN01000009.1| GENE 13 12885 - 13808 1052 307 aa, chain - ## HITS:1 COG:yaaF KEGG:ns NR:ns ## COG: yaaF COG1957 # Protein_GI_number: 16128024 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli K12 # 5 305 4 303 304 235 41.0 8e-62 MNKKPLIISTDPGIDDAVALTISLFAKELDVKLIAATWGNVNLEKTLNNTLKLETFLGTK VPVVSGAKLPLVKKPIDASEVHGKSGMDGFDFPEPDKGLLVSGLAATKIHEVVANSSEKV TLMQIGPATDFALYFRQYPDDLEKIEELVIMGGAIGRGNYGPYDEYNVSGDPEAAKIVFE SGVKIRVAPLELGHQAFVKQDTMDIVRNYGKNGDMLYSILSNLHDGTLTDGLEIYDALAV GMLLAPDMYTFKPAFVAIDTNDSYTYGASVMDFDNFFGKPANAEIGVAIDREQFVSWFAK VLKEADK >gi|260196058|gb|ACQN01000009.1| GENE 14 13900 - 14592 881 230 aa, chain - ## HITS:1 COG:SPy0889 KEGG:ns NR:ns ## COG: SPy0889 COG0120 # Protein_GI_number: 15674914 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Streptococcus pyogenes M1 GAS # 7 223 2 217 227 194 49.0 8e-50 MDKNTQDELKKEAAKVAADKVQAGSVLGVGTGSTVKFFIDWLGERKEKEGLTLKHIVTTS SRSKKQLESYGFKVDELADVDEVDLTVDGADRVDSQLNGIKGGGAALTLEKNVAVNSKKN IWIVDESKVVDHLSGFKLPVEVLPVSCMQVKKRLEKEGLNPEFRMNGNQKLTTHYGNYIL DLDVSPIPVPTGLADYLDHTVGVVEHGLFLNICDEVIVAKSNGTIQEIKR >gi|260196058|gb|ACQN01000009.1| GENE 15 14592 - 15515 1048 307 aa, chain - ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 3 303 4 304 304 242 46.0 8e-64 MKKIVVVGSSNVDTTLHVVDFPKPGETINALDITEAGGGKGANQAIAAAKAGSETYFINR VGEDSSGRFILKQLKCYGVDTTYVQTTSGTNTGHAYINLNEAGQNNIIIDHGANYELSID DIDAAEELIKDSDAIITQLETPIEVAIEAFKIAKKNNVVTVLNPAPAIKDLPKELLKLTD MIAPNETESSLITGIEVTDLESIKANSDKLHELGIENVVITYGDKGSYISTSNVEKLVPA FKVEAADTTGAGDTFIGFLTSQLNADFSNIEQAATFAARASSIAVSRLGAQPSIPTYNEV KELMGRE >gi|260196058|gb|ACQN01000009.1| GENE 16 15582 - 16388 743 268 aa, chain - ## HITS:1 COG:L51063 KEGG:ns NR:ns ## COG: L51063 COG1085 # Protein_GI_number: 15672818 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Lactococcus lactis # 2 251 5 247 261 222 43.0 6e-58 MNDEPLVYMYSVGKRKPYDYDYANRQSNTQNPCPFCNPQTLTDIYETDGDKILLHNKYPT LKDTMQTILIESSDHQGDISTYTREENRELMKFGLKCFQKMYNSGDYQSVLWYKNFGPKS DGSLQHPHMQIVGLDKMDGYKNIQENNFTGFEVGKSGDVEMNLSKRPVQGYQEVNIVTWH NQNLDTWADLIQKSTQYVRSVLSHGVDSYNLFFYPIKNGEGTCCKVIPRFYAPPYFVGYK LSQVDDDETLEWEAARLKGFITSGISLT >gi|260196058|gb|ACQN01000009.1| GENE 17 16613 - 17908 1690 431 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 42 381 19 365 419 150 30.0 5e-36 MKFKNKVALAAMLGVSLLATACSTGNKTSSSSSSIPTKITKKTTITFWYSLTGTSKSTLE NLTKEFEKKNPNIKVQLQNQGGNLGDLQSKLVSGLQSPKNLPTITQAYPGWLYSAAQNKM LVNLTPYVNNKEIGWGSYSNSKIKSALWDGAKINGTQYGVPFNKSVEVLFYNKTLLDKYG VKVPKTMSELKKASQEIYEKSEHKVKGVGFDSLNNYYMLAMKEKGIDFNKKLNFASSESQ AVINYYADGVKDGYFMMAGTEKYMSTPFDSGKVAMFVGSTANEAYVKSGLTQGNEYGIAA RPSSINVQQGTDIYMFSKATKLQRTAAFKYLKFLTSKASQTTWANKTGYMPVNTDVLDSA SYKASKTSKVPAILEATTKKLYYLPVTKNSESAYDQINANMQTILADAGKKKNWTSDVTT GQSKLTAAWKQ >gi|260196058|gb|ACQN01000009.1| GENE 18 17984 - 18607 806 207 aa, chain - ## HITS:1 COG:CAC3094 KEGG:ns NR:ns ## COG: CAC3094 COG1392 # Protein_GI_number: 15896345 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Clostridium acetobutylicum # 6 207 8 210 210 108 32.0 7e-24 MSRKSDQYYFDTFLKCANFAYEASQLLNEVVNDYTSDRVSNLTDKMHEIEHNADHEKHEM TEVLIKAFVTPIEREDIMELAHNIDNMVDRIEDVLMRLYCDNIQKIRPEILPICELLIQN TNEVVELIKDLPKFKKNAEFKEHIVNINTMEGKADVMFIDNMRNLHVHEKDALQVLVWRD IFNCLERCHDACEDVASSVEKIVLKNA >gi|260196058|gb|ACQN01000009.1| GENE 19 18620 - 19669 1012 349 aa, chain - ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 29 349 20 335 335 186 33.0 4e-47 MDISLSGFLQSLANPAMLTTVVLTLGVIFVNGWTDAPNAIATTVTTRGMAAKPAIIMSAV FNFLGVLIMTQINASVAETISNMVDFGGDAHASMIALAAALFSIVVYSVGASIFGIPTSE SHSLIAGLTGAAIAIQGSFKGINWNEWIKVLYGMVLSLVLGFALGWIICKCVILICQSMD RRKTNRFFSGAQIAGAAAMSFMHGAQDGQKFIGVLLLGMAFVNGQSSATSMVIPVWLMML CSITMGVGTSVGGEKIIKSVGMDMVKLEPFQGFSSDLAGAISILISTLYGIPISTTHAKT SSIMGVGAVKRLSSINLNVVKDMVLTWIFTFPGCGLIAYLMAKLFLLVF >gi|260196058|gb|ACQN01000009.1| GENE 20 19748 - 20410 780 220 aa, chain - ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 4 212 3 213 218 195 53.0 4e-50 MSTFINAYSPTNLRFLFEGLLVTVEVSIISIVLSYIIGLILGTIRYMKIKYVSAIVGVII DIIRNLPLLLIIFFTYFGFPELGIHASPFWAAISALVIFESAMLAEIVRGGIQAVPDGQM EGARSNGMTYLQAMRYVIMPQAMHMMMPALLSQFVSLVKDTSLATIIILPELLYHAQIIY SQNTTYMIPMYLIIAAMYFVVCFALSLFAQRLRKKLGKEA >gi|260196058|gb|ACQN01000009.1| GENE 21 20426 - 20686 262 86 aa, chain - ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 2 85 129 212 216 89 57.0 1e-18 MQAMRFVILPQAFKVAIPSLGNQFINLIKNSSVLAFVAGFDLMYQGDVIAFSSFQTVNTY LVVGCFYLVLTLPLSYYMRYLEKKIA Prediction of potential genes in microbial genomes Time: Wed May 25 13:48:52 2011 Seq name: gi|260196057|gb|ACQN01000010.1| Lactobacillus jensenii 115-3-CHN cont1.10, whole genome shotgun sequence Length of sequence - 28110 bp Number of predicted genes - 25, with homology - 25 Number of transcription units - 14, operones - 6 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 31/0.000 - CDS 1 - 283 231 ## COG0765 ABC-type amino acid transport system, permease component 2 1 Op 2 16/0.000 - CDS 280 - 1107 1033 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 3 1 Op 3 . - CDS 1117 - 1857 292 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 1893 - 1952 5.3 - Term 1917 - 1952 1.1 4 2 Op 1 35/0.000 - CDS 1975 - 3732 233 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 5 2 Op 2 . - CDS 3732 - 5468 263 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 6 2 Op 3 . - CDS 5465 - 5908 405 ## FI9785_616 putative transcriptional regulator - Prom 5938 - 5997 6.4 + Prom 5971 - 6030 6.9 7 3 Tu 1 . + CDS 6051 - 6686 878 ## COG0572 Uridine kinase + Term 6701 - 6738 3.1 - Term 6680 - 6732 13.1 8 4 Op 1 4/0.000 - CDS 6739 - 7698 1051 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 9 4 Op 2 . - CDS 7715 - 9958 2502 ## COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - Prom 10067 - 10126 9.2 + Prom 9885 - 9944 10.8 10 5 Op 1 6/0.000 + CDS 10135 - 11346 839 ## COG0477 Permeases of the major facilitator superfamily + Prom 11348 - 11407 5.4 11 5 Op 2 . + CDS 11439 - 12878 1361 ## COG0531 Amino acid transporters + Term 12887 - 12949 7.0 - Term 12872 - 12930 8.2 12 6 Tu 1 . - CDS 12942 - 14420 1488 ## COG0531 Amino acid transporters - Prom 14461 - 14520 7.3 - Term 14493 - 14528 2.7 13 7 Op 1 32/0.000 - CDS 14545 - 15264 1102 ## COG0704 Phosphate uptake regulator 14 7 Op 2 41/0.000 - CDS 15282 - 16034 350 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 15 7 Op 3 38/0.000 - CDS 16049 - 16930 1119 ## COG0581 ABC-type phosphate transport system, permease component 16 7 Op 4 39/0.000 - CDS 16934 - 17833 733 ## COG0573 ABC-type phosphate transport system, permease component 17 7 Op 5 . - CDS 17838 - 18704 974 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 18744 - 18803 8.6 + Prom 18699 - 18758 3.9 18 8 Tu 1 . + CDS 18819 - 19535 503 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 19628 - 19668 1.1 + Prom 19557 - 19616 4.7 19 9 Tu 1 . + CDS 19721 - 20983 1076 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 21042 - 21078 4.0 + Prom 20997 - 21056 5.9 20 10 Tu 1 . + CDS 21115 - 22380 1360 ## COG1301 Na+/H+-dicarboxylate symporters + Term 22394 - 22431 7.1 - Term 22368 - 22431 15.0 21 11 Tu 1 . - CDS 22443 - 23456 1209 ## COG1816 Adenosine deaminase - Prom 23502 - 23561 8.2 + Prom 23537 - 23596 9.5 22 12 Op 1 . + CDS 23644 - 24783 1663 ## COG0516 IMP dehydrogenase/GMP reductase + Term 24803 - 24844 6.5 23 12 Op 2 . + CDS 24856 - 26175 1253 ## COG1457 Purine-cytosine permease and related proteins + Term 26180 - 26229 6.7 - Term 26175 - 26211 2.1 24 13 Tu 1 . - CDS 26219 - 26740 613 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 26768 - 26827 7.7 - Term 26784 - 26827 7.4 25 14 Tu 1 . - CDS 26835 - 28109 1714 ## Apre_1411 sugar-binding domain protein Predicted protein(s) >gi|260196057|gb|ACQN01000010.1| GENE 1 1 - 283 231 94 aa, chain - ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 2 94 3 95 216 63 37.0 7e-11 MIEILQNNWSNLLSGFGVTIMISIISLCASLILGTVFAIMEVVPNKIAQAVAHTYIELFR NIPLLVITMIFYLIVPQYLFKISGFTAGCIGLSL >gi|260196057|gb|ACQN01000010.1| GENE 2 280 - 1107 1033 275 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 9 267 7 272 273 233 49.0 4e-61 MKKFCKWIFASFSLLFLLTLSACQKSSKSLDTYDKIKASQTITWGVKADTRLFGIMNIKT SQLEGFEIDLAKDLSKKMLGKNVKVNLVQTTAKTKIPLLRNGSVDALLSTMTITEERKKI VDFSTPYFNAGQAILVPKNSKLKNVYDLKKRGITVLAVKGTTAVANIKKFAPKANVSEYD DYGQAFSALKAGQGQALTTDNGILAGIADENPGFKIVGGTFTSEPYGIAVRKGDTKLRNK LDQALEELKADGTYQKLLKKWFSGIPGFSIKEASR >gi|260196057|gb|ACQN01000010.1| GENE 3 1117 - 1857 292 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 219 1 221 223 117 36 1e-25 MGAIIEFKNVDKYYGKYHALKNINLEIDEGEIVSIIGPSGSGKSTLIRTMNGLEKINSGQ LIVTGYDLADKKTDINKIRKNVGMVFQHFNLYENHTVLENIMLAPRIVLKRPEAENKEIA MKLLKRVGLEEKADLLPKQLSGGQKQRVAIARSLAMKPKVILFDEPTSALDPEMIQDVLD VMKYIAQAGITMVVVTHEMGFAREVGSRLLFFDKGEVLEDSHNPKEFFAHPKTERAREFL SKVISH >gi|260196057|gb|ACQN01000010.1| GENE 4 1975 - 3732 233 585 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 362 571 147 355 398 94 30 7e-19 MNNSKSALKYFYKYLKPHWKAIFWVTVFSLISTFLQVLAPTYLGKAVTKLTSYVANGGSI NSFLEIVAFLAASYLLSTVAIFISWVIMSNFTAHANNSMRKNLFNKLQRMTIRYFDTHQD GKILSLFTSDLDNIFNAMNQAIFELIAQVSLFIGTIYIMFKINVKMALFTVMTLPLALIL ALVLIKKARKYIGLQQKEISNLNGFINEQLNGQAVIITNGLQKQSVQEFKEYNKAVRNAM FKGQFYSGILFPLMNGLATLNFAIVIAGGTYLILTNQVSMAAGLGLMVMFIEYFYTYFQP LTQLSSLYNLIELALTGAKRLAKVEQEKEEKRVSDGKELTPLKQGLALEDVHFGYNKDKE ILHGINISVPKGKTVAVVGPTGSGKTTIMNLVNRFYDVDSGRITIDGTDIRKFTIASLRN SVGIVLQESVVFSGTIFENIAFGKQDATLAEVEAAVKKAQIHDYILSLPKGYETEISENG DTFSTGQKQLISIARTLLTDPDFLILDEATSNVDTVTEEKIQVAMDEVVKNRTSFVIAHR LKTIINADKIVVLKDGTVLEEGSHKELLNRKGFYYKLYTDQMVLD >gi|260196057|gb|ACQN01000010.1| GENE 5 3732 - 5468 263 578 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 329 558 126 354 398 105 30 2e-22 MSLFQILFRHLRQYPKEICGALIAMLLSALAVLYQPRLLESIQKDLLKGDTSKVISDSIW IIGLGLIAIVAGVLNVYFAAKLAQGVTSDLREEVYEKIQSFSYANIDTFSTGSLTTRLIS DMNQIMNLIMSIFMQLLRLPIILVGSFVLAIITIPRFWWITLLVLVVLTIVGLFILKLVN RQFEQYQVRLDKVANLAQENLLGIRVVKSFNQEDRQVNKFSLASDALNRLNLNIGYLMSA VIPAFSIIAYIAICAVTTMIGLQIKLHPTDIAVISPYVNYILTLLFVVWIIGIALMNVSR GKVSLGRIKEILDTKPSIIFNEAAPDDTLSGDVEFDDVSFTYPGNTKPTLQHISFNVQAG EMIGIVGATGSGKSTLAQLIARLYDPTSGIIKIGGSDLKKVNEKALRKSVSFVLQKAILF SGTIASNLRQGKSDATKAELERASAIAQAFEFVRNYQDGFNHEVQERSANFSGGQKQRLS IARGIISNSPILILDDSTSALDAESEKKVQDALEHKLKDTTTFLIAEKIVSVKNADRILV LDEGKLVAQGTHEELLKTSNIYQEIFKTQQAREKRGEL >gi|260196057|gb|ACQN01000010.1| GENE 6 5465 - 5908 405 147 aa, chain - ## HITS:1 COG:no KEGG:FI9785_616 NR:ns ## KEGG: FI9785_616 # Name: not_defined # Def: putative transcriptional regulator # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 7 145 6 145 145 132 50.0 3e-30 MKYVKMTEKMNMAIINSGRAYQTWDMNNGLPTYLSVILYELFYHECLSQKELLERSGIPK QSINKGIKMLQEKNYLICEYNGGDRRVKECYLTKAGIEYAKTKVGPLFDLEDEIIDQMGV KRVEKLTELLEEYSHTLWKLVKEGEKS >gi|260196057|gb|ACQN01000010.1| GENE 7 6051 - 6686 878 211 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 5 208 3 205 211 240 58.0 1e-63 MTELKRPIVIGIAGGSGSGKTTIAHEVARLINDDDHIITLTQDSYYKDNTGIPMSERQKI NYDHPDAFDMPLLVAQINQLMHRKAVEMPVYDFTEHTRSSKTIHVEPADIIILEGILVLA DEDLRDLMDIKVYVDTDDDIRFIRRLERDLKERGRSLDSVIDQYLATVKPMYHQFIEPTK RYADIIVPEGGENNVAIDMLTTKMRSVLAND >gi|260196057|gb|ACQN01000010.1| GENE 8 6739 - 7698 1051 319 aa, chain - ## HITS:1 COG:lin1066 KEGG:ns NR:ns ## COG: lin1066 COG0463 # Protein_GI_number: 16800135 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Listeria innocua # 1 317 1 321 329 354 52.0 2e-97 MADKVLTIVVPCYDEQEVLHETSKLLKNIIDDLIEQNKISVNSKILFVNDGSKDKTWEII EQLQTQEKVFTGIRLSRNFGHQNAVMAGLSRAVWYSDMMITIDADLQDDIQKIYEMVDNF YQGFDIVYGVRNNRDTDTGFKRTTAEAYYWLMTKMGVNLIPDHADYRLMSKRAVEALLEY HEENLFLRGIVPELGFNTTKVYYKRKERFAGESHYPLKKMLSLAINGITSFTIAPIKVIL YLGILMVLYGGGALVLLGLTHHMSDYRSLINSLWLLGGIQLITLSIIGTYVGKVFNDVKK RPRFIIEDDTYSDSMKKVR >gi|260196057|gb|ACQN01000010.1| GENE 9 7715 - 9958 2502 747 aa, chain - ## HITS:1 COG:BS_yycA KEGG:ns NR:ns ## COG: BS_yycA COG1807 # Protein_GI_number: 16081101 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family # Organism: Bacillus subtilis # 8 742 2 682 685 445 41.0 1e-124 MKQKMREKIKKIDYWLVAILILAAFLYGWNIWKAGYANQFYTAAIVSMSKSWKAFWYGSF DPASFITVDKPPVALWFMVICVKIFGFHSWSIVLSSVLFGIGSVFLMYKLIKPYFGRLAA NLGALFMTLTPIVVANSRTNNMDATLVFFLLLAGYVLHKAILKHKPLLVLVSFALIGISF NIKMLQAFMVLPAMYFFYFIASKQNWKKKTLWTIAATASLAVFTLAWPLAVDSTNKNNRP YIGSSSTNSVLNLAFGYNGTERLLGQSTGTGGAFPGMNSKNNSSKSGNAPSGTKTGSMKK PSGTNPASSGKRPRGQMGQGGPSAGGPGGTNSNKQMPGKNQAPSNSTKTKRPSGSMKRPS GKMGQGGPGRKGGGQGAGGGIFNVGTAGPFRIFQTALGQQVSWLLPLSLIGFVIAYFNEW RKKKKWLKFNKRQTHLLYWLGWLVPVYGFFSMAQFFHPYYMIMIAPPIAALAAIGIASFV ENRTKKKAAEKLEDINSETDGLTADNMAEIEKETKFASKANTYLMAFAVLATAGLQAWYV YEYYPWATYLLVIAGLLVSGYIVISAKKFNKKASLSAILVTLLLAPGFWSLTPTLSGESA AVPTTGPSLLSSNNVNDSFGSGSVNTKLISYLEKHNGSATYLFATMDSNTAAPYIIKTGK AVMTIGGYNGTDNAISLKKFKQLVKTGKVKYFYLTNDNGNNSSIVKWVKKYGTKVSASEY GGSSTSSQSMGRGPGNSTGTLYKLSIK >gi|260196057|gb|ACQN01000010.1| GENE 10 10135 - 11346 839 403 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 7 403 4 400 402 347 45.0 2e-95 MVTNNIWKKNLFILSIAVFIAGIAFSEIMPFLPLYVASLGDFSHQELNFWSGFIYAGMYI VSAITSPLWGKLADKKGRKLMILRASFGMAIAIGAMGLVTNVYQLFALRCLQGLFAGFVS NSNALIATQTPKEKAGQAMGTMASSVTAGTLLGPLVGGFLASIFSYRITFFITGILLFTT FIMSFLWVKEDNFVAKNTAKLDKTKDVIKQFNSPILIFGLLITTMIIQAANNSINPIVSL FVKQLLHNHGNVVLISGIIAALPGIATFAVASKFGTLGDKIGTHKIIIAGFIAASLFFFA TAFVQNTIELGILRFLVGFSDACLFPQVQTMLTKNSPAAITGRVFSWNQSAMYLGNIIGP LIGTTVSGLSNYSMVFLVTAVIVLFNLFLFKINVLNHLQKSKN >gi|260196057|gb|ACQN01000010.1| GENE 11 11439 - 12878 1361 479 aa, chain + ## HITS:1 COG:SA2396 KEGG:ns NR:ns ## COG: SA2396 COG0531 # Protein_GI_number: 15928189 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 471 1 470 482 608 68.0 1e-174 MKNLFERLSLKEDPSVYEDKDSHLKRTLGVKEFLALGVGTIVSASIFTLPGVVAAKYAGP AVTISFLLAALVAGLVAFAYAEMSAAMPFAGSAYSWINVIFGEFWGWIAGWALLAEYFIA VAFVASGLSSNLQGLLSPMGFSLPKQLQAALGTDGGLFDFFACGVILLIAILLSRGVKEA ARVQNILVVLKVLAIIIFIAVGITALHPENYTPFIPAQKVNSDGTIFGGWIGIYEGVSTI FLSYIGFDSIAANSAEAKNPQKTMPRGIMGSLLIAVVLFVGVGLVLVGMFPYSEYANNAE PVGWALRQSGHPIIAVVVQAIAVVGMFTALIGMMLAGSRLVYSFGRDGMLPKWLGQLNKD KLPNHALIFLTVVSVVLGALLPFSFLAQMVSAGTLIAFMFVTLGIYKLRKREGKDIKDPS FKMPFYPVLPALAFLASLAVFLGLDTAAKLTAGAWFIIGLIIYFSYGIKHSSLAKSKNK >gi|260196057|gb|ACQN01000010.1| GENE 12 12942 - 14420 1488 492 aa, chain - ## HITS:1 COG:ECs5137 KEGG:ns NR:ns ## COG: ECs5137 COG0531 # Protein_GI_number: 15834391 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 6 484 20 498 514 428 48.0 1e-119 MSDKQKKIGLFSLIMMIFSSIFGFANMPVAFLQMGYASIPWFIFAALLFFLPVSMMIAEY GAAFKDDHGGMYTWLKESIGEKWAFIGTFIWLSSWIVWLLSISSKVFIPFSALIFGKDMT QTWAFGPFNATQVVGILAILWMIFVTFAASHGAEVISKVSSVGGYFVTGMIFVFIIGSIV TLIAGHGHLSQELTTSSLFVSPNPAFQTPIATLSFVVYAIFAYAGMEALGGIIDSVKDPE KTFPKGMMISSLLIAAGYSVMVLLWGISVNWNEVLNSKSVNLGNITYVMMGHLGYYLGQT LGLSNSTSLLLQSIFIRFVGLGMFLAYVGSFFILIYSPIKSFILGSKHLWSEKMTKLNKV GVPAHAMWMQAILVCVLIFLISFGGGEAKTFYTILTDMSNVATSFPYLFLIAAFPLFKKK QKNLPFEVFKHKGFTNLVVAISFLIVLFGIIFTCVEPFLQGDLVTGFWTVIGPIFFGSLA YGIYARAEKKQK >gi|260196057|gb|ACQN01000010.1| GENE 13 14545 - 15264 1102 239 aa, chain - ## HITS:1 COG:SPy1240 KEGG:ns NR:ns ## COG: SPy1240 COG0704 # Protein_GI_number: 15675200 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pyogenes M1 GAS # 5 216 6 217 217 166 40.0 3e-41 MGVMFDSELKKLKSRFVEMGLDTNEQLYQATKAFLDHDSVLAKKVINGDLAINDEEVSLE KRALKLIALQQPLANDFRTIISILKASNDVERLGDYAVHIGRATVQLKGNHHSPEIEQAI EEMSAVVREMLEKVLDAYVYTDEKAAYEVANQDLKVDIIYVREQKRLLEKMMSNGESIPS YEQYVSVIRTLERAGDHIVNLAEWVIYIANGKLVELNPGKTDPDLVEKGLKDTSKANKK >gi|260196057|gb|ACQN01000010.1| GENE 14 15282 - 16034 350 250 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 246 2 240 245 139 34 2e-32 MDKIALELKNVGVAYGEKQVVKNVSMKFPKNQISALIGASGSGKSTLLRSINRMNDDIAT VTGKIMFEDVNINDPKINVYRLRRQIGMVFQQPTPFPMSIYDNVVYGLRLAGEKRKDILD QRVEESLKQAALWDEVKDSLNSNGNSLSGGQQQRLCIARTLATRPEIILMDEPTSALDPI STSQIEQTMLELRKDYTIIIVTHNMQQASRSSDWTAFMHQGELVEFNKTSEIFINPQKQQ TSDYLSGKFG >gi|260196057|gb|ACQN01000010.1| GENE 15 16049 - 16930 1119 293 aa, chain - ## HITS:1 COG:lin2640 KEGG:ns NR:ns ## COG: lin2640 COG0581 # Protein_GI_number: 16801702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 1 291 1 291 294 298 53.0 8e-81 MNAEKRDHLATILISGGAIFAGILVILFLLYLIVEGLPQLSWHFLTSASDSFSTNGGIRD QLFNSFYLVVITLIISIPLSLGAAIYLSEYAKDNIFTRSLRLAIEVLSSLPSVVIGLFGY LIFVVNFKMGFSILAGALALTILNIPLLTTNAEQALRQIPYLQRQAGLGLGMTKWRVTKD IVIPAAFPSILTGAILASGRIFGEAAALIFTSGQSSIAVSYSNWNPFDPTSFLNLMRPAE TLAVNIWKLNTEGLVPNAQAISSGAVAVLILTILIFNVSARLFSAYISKKLGK >gi|260196057|gb|ACQN01000010.1| GENE 16 16934 - 17833 733 299 aa, chain - ## HITS:1 COG:SPy1244 KEGG:ns NR:ns ## COG: SPy1244 COG0573 # Protein_GI_number: 15675204 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 9 298 10 305 311 278 57.0 1e-74 MKQNKKHLLLSPSKESYEEKWGKTISYGSIALIGIVVISIIIFLTGKGLALFLKDHASIW EFLTSNNWNPSHNSFGALPMIVTSFVVTLLAGIIAAPFALIIALAINEIFPKWFGKILQP IIELLVGVPSVVYGFAGLILITPVLRGFFGGSGFGILAAVVVLFMMILPTMVSMMVDSLR ATPKNFRTASYDLGATRWQTLHMVVIPSAKGGLLTAIIFGMTRAFGEALAVQMVIGNAAL MPKNLMSPAATLTSVLTTGMGNTIMGTSANDALWSLALVLLLMSLVFNILIKLINKKRG >gi|260196057|gb|ACQN01000010.1| GENE 17 17838 - 18704 974 288 aa, chain - ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 30 283 43 296 302 271 56.0 1e-72 MNKKSILGLVFIALMAFCWWDYEAHGVKQTSKVTNVGSTALQPLSESAAAGFLKKNPTIN LIVQGGGSGTGLSQVQNGTVEIGSSDVYAESKKGINAKKLTDHIVAISAIVPIVNKKLNI KNLTTQQLRDIFLGKITNWKQVGGPNLEITIINRASGSGTRAAFQELVLNGKDPVKAQEQ DSNGSVKQIVKATPGAISYVATSYVDNTIKTLTVDGIDASSKNVETNKYKLWSYEHMYTQ KQASAAAIKFIKYIQSKEVQNTLVKRAHYISIYDMKVVRDINGVVRKK >gi|260196057|gb|ACQN01000010.1| GENE 18 18819 - 19535 503 238 aa, chain + ## HITS:1 COG:SA1516 KEGG:ns NR:ns ## COG: SA1516 COG0745 # Protein_GI_number: 15927271 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 143 237 134 228 234 107 53.0 2e-23 MTKKFLILSQNPDLTTKLEQLIKKKKENYRHLTTPTSLVVALNDDDDSYSGIFWDITKSN LDTTLATLLLIRNQVAGPIIIFTNSHSDRTLNKLYKAKVDFVADLEINEKLLLRIFEQRL WSYTFKIQPEEKKLAKRANEEIIETGNIKININKYSVFKNNEPVVLTPKEFQLLVYLAQN KGNVISREQLLQKIWGYDLLGSSRIVDIHISHLRDKLEDDSSHPQHILTKRGFGYRFI >gi|260196057|gb|ACQN01000010.1| GENE 19 19721 - 20983 1076 420 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 7 420 5 427 447 419 50 1e-116 MAQDVVLDVEEKPGFGQWIGLSMQHMFSMFGSTVLVPILVGLDPSIALFSSGVGTLLHLL ITHHKIPAYMGSSFAFITPMIALMKTAGYPAIAQGVIASGLVYLIVALIVAFAGSDWIDR ILPPIVVGPIVMVIGLSLAGTAATDATMNNSKYDLRYFAVAMLTLLVTIVFNMYFKGFWG LIPILLGIVSGYIIACLFGIVDFSKVMSASWISMPKFEIPFVSYSPKMYWGAILSMAPIA FVTMTEHMGHIMVLNELTGRDFFKDPGLKKTLAGDGVASVAAGLLGGPSVTSYGENIGVM AITRVHSVYVLMGAAVFAILFSFVGKLSALIESIPSPVIGGISFLLFGVIAASGLKVIVE KKIDFNKKRNLMIASVILVIGIGNAYLQLGNFQFSGVAVATILGIILNLVLPQEAASEKE >gi|260196057|gb|ACQN01000010.1| GENE 20 21115 - 22380 1360 421 aa, chain + ## HITS:1 COG:BS_gltT KEGG:ns NR:ns ## COG: BS_gltT COG1301 # Protein_GI_number: 16078086 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Bacillus subtilis # 8 421 5 418 429 384 51.0 1e-106 MKHSRVPRISLGTQIIIGLVLGIIVGAATYHNQVAISTMSGLGTIFLRLIQMIVMPIVVS CLTVGIANIGDLRKLGRIGGKTLLYFEVLTTIAIILGLIVANLTRPGDFINIHSLQGGDI SKYLATAKTASKTGIWDTIFAVIPTNIFKSMSEGDMMPVIFFSVFFGLGIAAIGEKGKII TQFLNAVSGVMFKVTNWVMKFAPLGVFGLIGMTIAQMGLSALLPLGYFILVAYLTMIFFC IVILGLVAYIFKLDYWETMKKIWPEILLAFSTASSEATLPRLMKKMQDMGVEKGVASFVI PTGYTFNLDGSAIYQSLAAIFLAQAYGLHLTWEHQFTLLVVLMITSKGMAGVPGASFVVL LASVATIGVPIAGLTFIAGIDRFVDMGRTSVNVVGNTFASLVIGESEKALDRKKYEQYLN K >gi|260196057|gb|ACQN01000010.1| GENE 21 22443 - 23456 1209 337 aa, chain - ## HITS:1 COG:SPBC1683.02 KEGG:ns NR:ns ## COG: SPBC1683.02 COG1816 # Protein_GI_number: 19111850 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Schizosaccharomyces pombe # 1 333 1 334 339 313 47.0 3e-85 MVDLTRDFLEKMPKAELHVHIEGTLEPKLKLELAKRNHVELAQKTIEEVKATLQYDNLAD FLAVYYEAMQVLQTEQDFYDLAMAYLKKAAKNNVRHVEIFFDPQAHESRGISFETVLNGL YQATVDARALNVDAHLVMCFLRDYSRNNAQKTLEKALKHQDKILGIGLDSDEHNNPPMKF YYQFAKASEAGFHITAHADVDQVDSINHIKELLEVINVERIDHGTNIVENEDLVSFAAKQ KVGFTSCPLSNGFLSPDLKGNEVKYLLEHDVRVCLNSDDPAYFGGYITDNFEAEVKKYNL SADEVKALAANSFKMSWISEEQKQFYLEELDRYFEEN >gi|260196057|gb|ACQN01000010.1| GENE 22 23644 - 24783 1663 379 aa, chain + ## HITS:1 COG:SPy2206_3 KEGG:ns NR:ns ## COG: SPy2206_3 COG0516 # Protein_GI_number: 15675939 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pyogenes M1 GAS # 100 377 8 283 286 400 78.0 1e-111 MSNWNNKFVKEGLTFDDVLLIPAESHVLPNDVDLKVELTSSLKLNLPFISAGMDTVTEHE MAIAMAQAGGLGVIHKNMTITNQANEVKLVKNTEVTSEKAAVDNEHRLLVAAAVGVTTDT FERASALIDAGANAIVIDTAHGHSAGVLRKISEIRAKFPNINLIAGNVATAAGTRALYDA GVDVVKVGIGPGSICTTRVVAGVGVPQITAIYDAANVAREYGKTIIADGGIKYSGDIVKA LAAGGNAVMLGSMFSGTHETPGQIFENQGQKFKAYRGMGSVGAMSQAHGSSDRYFQGGVN EANKLVPEGVEACVAYKGYVKDVIFQLIGGLRAGMGYVGAPDLAALIENAQFVRITNAGL VESHPHDVQITKQAPNYQG >gi|260196057|gb|ACQN01000010.1| GENE 23 24856 - 26175 1253 439 aa, chain + ## HITS:1 COG:PH1159 KEGG:ns NR:ns ## COG: PH1159 COG1457 # Protein_GI_number: 14590986 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Pyrococcus horikoshii # 11 371 8 344 422 135 26.0 1e-31 MNHESFQIKEKDRTTNSWDMFATWVGANANNGTWFVGGVLAACGFALATKILVLSSALSY IFLSLVGYIGYKTGLSTMTIARASFGERGSYLPSLVNITQFIGWTAVNTFIAAQSVSLLL KDLLNMHNETLGLTIGIIVMSILHILSVASGSKSIQLIERIGVALVFIFVIWESIAVFKA VSLNQIISWKVPNSSKMALGSAIDYVAAFNLAWVTAGADFTRFTKKKSNSTIAPFWGALT GVIWFAVIGLISTISIAITSGVYNANNSDPSTIASKLGLGIVALLVIILTSMTANAVNLL AAGSALSNIFPKIRLKHSLWIVVSAATLVTFIPMFVGSFLETFESFLDYVGMVLGPTIAI ICTDYYFIKKRNYEIPQFGKTFGTYWYKSGINWKAIIVFILGIIIFLTGKNIQLLSNTIG ITFLDMTICSLLYWILMKK >gi|260196057|gb|ACQN01000010.1| GENE 24 26219 - 26740 613 173 aa, chain - ## HITS:1 COG:SP0580 KEGG:ns NR:ns ## COG: SP0580 COG0454 # Protein_GI_number: 15900490 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 7 173 2 168 169 129 40.0 2e-30 MSQKVSIRPIQTDEIDQLIKISKQCFHQTFDPWRALEDVNTYIQRAYTREKLLSELKTTT SKMFFAFVDNQIVGYLKVNWDSSQTENNWPEAFEIQRIYVLKQFQGLHVGSALMHKAISM AKEEHFHRVWLGVWEHNDKAQKFYHYFGFKIEDEHTFMMGDTAQRDLMMVKDI >gi|260196057|gb|ACQN01000010.1| GENE 25 26835 - 28109 1714 424 aa, chain - ## HITS:1 COG:no KEGG:Apre_1411 NR:ns ## KEGG: Apre_1411 # Name: not_defined # Def: sugar-binding domain protein # Organism: A.prevotii # Pathway: not_defined # 15 347 1621 1912 2126 96 28.0 1e-18 DTTSSTPGTTTESSVDKSALETAVNEQSDVQKTSAYYNASDDKKQAYDDAVAAGQTVLNN DSATQSEVDSATSAIDNAKAALDGQSSSDKPATQSETDGSTESVDKTNLQKDVDRAHEVQ TSTNPNEYLYYASASDEARKAYGDAVAKGEQVLSDTNATQEEVDAADKAIRDAEQRLIDS AEKAQNNVNLPERVKVEKMGQPTSDELSQIKKNIEAANPNTTVTVYSDGSATIKFSDGSS AELTKEDTTIQTDAIENNGDRSSSENTGNSNFENSDSSIDKSSLEAAVNEKSSVESTDAY KNASDDKKQAYDDAVSAGQKVLNDNSATQNEVDQALQTIKNAKAALDDNTEINSKATANS KSSSVSSTSSKEKTPASNSSENRVATDANKLPQTGAQVGEVSLIGLILALLGLLGFRRKK NNEE Prediction of potential genes in microbial genomes Time: Wed May 25 13:49:06 2011 Seq name: gi|260196056|gb|ACQN01000011.1| Lactobacillus jensenii 115-3-CHN cont1.11, whole genome shotgun sequence Length of sequence - 11332 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 6, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 3233 4496 ## LJ1128 hypothetical protein - Prom 3323 - 3382 5.9 - Term 3424 - 3470 7.9 2 2 Op 1 . - CDS 3482 - 4951 1505 ## COG0531 Amino acid transporters 3 2 Op 2 . - CDS 4976 - 5305 187 ## lhv_1088 transposase - Prom 5415 - 5474 7.6 - Term 5403 - 5453 4.2 4 3 Tu 1 . - CDS 5516 - 6085 659 ## COG4721 Predicted membrane protein - Prom 6218 - 6277 6.8 5 4 Tu 1 . - CDS 6279 - 7361 1378 ## COG1363 Cellulase M and related proteins - Prom 7502 - 7561 6.1 + Prom 7325 - 7384 4.7 6 5 Op 1 21/0.000 + CDS 7472 - 8833 1313 ## COG0477 Permeases of the major facilitator superfamily + Term 8867 - 8900 3.1 + Prom 8860 - 8919 10.3 7 5 Op 2 . + CDS 8956 - 10251 1224 ## COG0477 Permeases of the major facilitator superfamily + Prom 10410 - 10469 8.9 8 6 Tu 1 . + CDS 10503 - 11204 149 ## COG3274 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|260196056|gb|ACQN01000011.1| GENE 1 2 - 3233 4496 1077 aa, chain - ## HITS:1 COG:no KEGG:LJ1128 NR:ns ## KEGG: LJ1128 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 541 1042 786 1296 4734 181 39.0 1e-43 MFSKKNKKQYDLKHADGRQHWSLRKTTLGMASVLLSTTIYLGSTNVLVHADTTSDSQTSQ ATTSSSSSDTSSSSSQTSSSESSSATSASSTSEQTNSTTSSNSEASSSASSSESSTSSVS SSSSSSSSDSNENETNTSSNVVSTSSSSSADTNDSTTDQTSSSADGSSSSNQSLYTDEAS ATSAANKITEDNKTTTTTTTISTAYDNKSTALTQKSSFDFSQYSGLPEYYMWMSYINSNK DIKANASSNVVISDPVYDATTNTVTYTIHFNPSNGIVTTSGSTLTDASAQYAIEISKNLK VVSISYGYNGNMTDGTSTYTSGGGTLSSSSTNGTATKMIVSNTTYANTSTTGLSSSNAIS SVSSDIGQTIIFSPNTTLYYQASNSKGLDVTIVATVDSSVSTSFTGVNAIESYIPKSLWN NNSGIRDMLGDTPVVMSTYKAVTSSTIAEGQAASNTTTTTMTNATGVASTSIPVSVVFDN SSSESNITSVDYTLTKSASSLKEANSTAYVNATDDSTSGSLSASNNYTQNYYDVEAIPSG TTVSSSALASDLLTSDALTVTDVKINSTSGTYSYLVSQTNSGIEIHVIDKTDLETAVNDQ NDVQKTSAYYNASDDKKQAYDDAVAAGQTVLNNDSATQSEVDSATTAINSAKSALDGETT DKNALETAVNDQSDVQKTSAYYNASDDKKQAYDDAVSAGQTVLNDDSATQSEVDSATSAI DNAKSALDGQATDKTALETAVNDQNDVQKTSAYYNASDDKKQAYDDAVAAGQTVLNNDSA TQSEVDSATSAINNAKSALDGQATDKTALETAVNEQSTVESTPAYYNASDDKKQAYDDAV SAGQKVLNNDSATQSEADSATTTINSAKAALDGETTDKRALETAVNDQSNVQKTSAYYNA SDEKKQAYDDAVAAGQTVLNNDSATQSEVDSATTAINNAKSALDGETTDKSALETAVNDQ SDVQKTSAYYNASDDKKQAYDDAVSAGQTVLNNDSATQSEVDSATTAIDNAKAALDGQAT ETATSSTGTSDTTSSTTGSTTESSVDKSALETAVNEQSTVESTSAYYNASDDKKQAY >gi|260196056|gb|ACQN01000011.1| GENE 2 3482 - 4951 1505 489 aa, chain - ## HITS:1 COG:yjeM KEGG:ns NR:ns ## COG: yjeM COG0531 # Protein_GI_number: 16131981 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 479 15 498 514 394 43.0 1e-109 MSEKKKKITLVGLILMIFSSIYGYSNSLTAFYQMGYASIIWYVLTAVLFFLPSALMFAEY GASFKAAKGGIFSWLRGSIGEKPAFVGTFIWLAAWVIWLVSSTQFFLVSVATAIFGKDTT TSWHLFGLSSDQTLGILEIIFLVLVCAIASKGINGIVRISSICGVATLGISVVFIVVSLI ILMMQHGQLAEPLTAASLVKSPNSSFTSPFAVVSFIVYALFAYGGLETMAGVIDNVEKPE KTFPRGLIWAMIMMTVLYILTIFLCGVTANWSEILGQKNVNLANVEYVLINNMGLVFGKA FGLGHAQALILGKVFSQITAISDVLGGLGAAFVMLYSPIKSFIEGCDKRLLPKKLTTLNK YDMPEFAMWCEVAFVSLIILLISFGGSSASAFYTVLTDMMNVSSAAPYLFLIGAFPFFKM KKDLDRPFVFYRSQKCVWIVIASGIIFTIIEPIVEGDPATAFWTAFGPVFFGVVAWIFYS RAEKKIKDL >gi|260196056|gb|ACQN01000011.1| GENE 3 4976 - 5305 187 109 aa, chain - ## HITS:1 COG:no KEGG:lhv_1088 NR:ns ## KEGG: lhv_1088 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 7 69 354 416 425 98 77.0 7e-20 MRITYCKTLLTFKHNLRAVLNGARFSYSNGCLEGFNSKIKQIERTAYGYSNYIYLLTRIR LEKTGLKKKNQAIYILLDSLNHSISTVFDKEPFFHTLISIKMYSVVYRF >gi|260196056|gb|ACQN01000011.1| GENE 4 5516 - 6085 659 189 aa, chain - ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 8 184 5 179 186 94 33.0 1e-19 MFKKKLNWDIQAIILVSLVGLIMGVIYTYGFNLIYNLTKAALLPTGYAQLTDTLMSGLWY MAAPLAVYFVPVKGSATLGETLAAFGEMLVGGQWGAITILAGFVQGLGNEVGFLTSKSRK HFTWSAVLLGATGAHFTGFFLTYVLYGWYKYNLTLQILMFITGWLSSLIFDGVLIKLICS RFERAFFKK >gi|260196056|gb|ACQN01000011.1| GENE 5 6279 - 7361 1378 360 aa, chain - ## HITS:1 COG:SA2244 KEGG:ns NR:ns ## COG: SA2244 COG1363 # Protein_GI_number: 15928034 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Staphylococcus aureus N315 # 7 352 5 351 358 182 31.0 1e-45 MDKKDEIRMLKNFSDANATSGFEEEFVKLFTNTIKKYADIEVDGMLNVYANKKENKAGRL TVQLDAHSDAVGFITQAVRPNGLIKFVPLGGWSRVNIPALKVKIRNKNGEYISGVVATKP PHFMNASERNKLPEVADLSIDVGSSSRAETINDYQIDTGCPIFVDVKCEYNEKTGLFFGK DFDDRFGAAAMATVLEELQGENLDVNVTAALSSQEEVGLRGAYVTARKVRPDLCIVLESC PADDTFEPDWLSQTGLKRGVMLRDMDVTFLPNPKFQQYACDLATKNNIPFTRSVRTGGGQ DGAAIYYENGAPTIVIGIPVRYEHSPYCFSSYQDYRASVDLTKAILKDMTAEKLASFKTF >gi|260196056|gb|ACQN01000011.1| GENE 6 7472 - 8833 1313 453 aa, chain + ## HITS:1 COG:YPO2459 KEGG:ns NR:ns ## COG: YPO2459 COG0477 # Protein_GI_number: 16122680 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 51 443 35 428 452 195 34.0 1e-49 MGEQNQQSKTEIKRKQKKNIFYKRKSYKKAPFSDVHAQLYWALVLGQIACAYALGIAGSA FNHAKAFLSINDTWLGLLGAGSLIGLAGSFIMGRISDRFGRKHLLMANMYIYSLLSILQF FTSNLFLLFLLRVGIGLMIAIDYTVGNSILVEWMPTKDGAKKQSNLLLYWSYGFGLSFLA SQFISDWRFMLCSSAVLGLIAAIYRSIVQIPHSPSWLASQGEHRQAQKVIQKNLGKKWGL PKSLLRVKKKTDASPLELFGKKYWRATLAGTAFYATQAFAFFGISIFLPILLKNMHMNNA FLSGLLYNLAIIVGTAIGIWLFNKMSRRSFLIVTFSISIICLFILALFPQLPSILTLIIF TIFSIVLSISLLLDFTYTTELFDLRIRATGVGFVITMSRVGAAAGTFLLPIIVNLAGAYI TLCVCGVVLLIGTIICIFVAPETNPQFIKKENK >gi|260196056|gb|ACQN01000011.1| GENE 7 8956 - 10251 1224 431 aa, chain + ## HITS:1 COG:YPO2459 KEGG:ns NR:ns ## COG: YPO2459 COG0477 # Protein_GI_number: 16122680 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 9 423 13 428 452 185 31.0 2e-46 MTQTKNYKDAPFSKVHSQIYWAMNIGQIACAYALNVAGIAFGNAQQELGINNFILGLLGA ASLIGLIGSFFMGQLADKFGRKHMLMSNMYIFTILSLLQYFTTNVWILLVLRLLIGLMIA VDYTVGNSLMVEWLPTKDAAAKQSHLLFYWTLGLLIAYVTGHYISNWKLLLASSAVFGLI AALNRSFIRLPASPSWLASHNQNESATELIHERLGEEWGLPKHLVELEEDPSINWMTLFS KNYWRQTLAGTAFYTTQSFAFFGINIFLPILLKSMDVTDTYLAGLFYNIATVAGPAIGIY FFNKYRRRSFLIVTFSISSLCLFILAFGKSINSIVEITIFTLLAVILTASVLLDFPYTSE LFDIKLRGTGVGFVIAMSRIGAALGTFLLPVIVSAYGSYVTMAICGVVLLLGTVICYFVA PETNPRYINKD >gi|260196056|gb|ACQN01000011.1| GENE 8 10503 - 11204 149 233 aa, chain + ## HITS:1 COG:RSc3292 KEGG:ns NR:ns ## COG: RSc3292 COG3274 # Protein_GI_number: 17548009 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 6 232 3 227 336 58 24.0 1e-08 MKRIFYIDFLRIISMLGVILLHASATKLRMPIDFSWHLVNFLTSFATCSVPIFFMISGSL LLNSDSTANINILWKKRLPKLLIPFFIWSIINIIGYSFILKINNLKLLLISILQIPGRPG EISLWFMYPFIIIYVFSPVLLLITQNKSLLKYVLFIWLIFVIILPTFNNILPFPLKLIFS TSQDWKIIGGYAGYFLLGYYLSKIDTQKISYKRLLIVFLSIIFVIALGTYFFT Prediction of potential genes in microbial genomes Time: Wed May 25 13:49:25 2011 Seq name: gi|260196055|gb|ACQN01000012.1| Lactobacillus jensenii 115-3-CHN cont1.12, whole genome shotgun sequence Length of sequence - 4692 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 273 147 ## gi|297206400|ref|ZP_06923795.1| conserved hypothetical protein + Term 279 - 320 6.6 - Term 270 - 306 4.4 2 2 Tu 1 . - CDS 313 - 2283 2050 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component - Prom 2334 - 2393 10.2 + Prom 2304 - 2363 8.6 3 3 Op 1 . + CDS 2434 - 3012 500 ## LAF_1631 hypothetical protein + Prom 3016 - 3075 3.6 4 3 Op 2 . + CDS 3100 - 3891 922 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 3899 - 3967 3.5 5 4 Tu 1 . - CDS 3998 - 4690 766 ## gi|297206405|ref|ZP_06923800.1| possible surface protein Predicted protein(s) >gi|260196055|gb|ACQN01000012.1| GENE 1 1 - 273 147 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297206400|ref|ZP_06923795.1| ## NR: gi|297206400|ref|ZP_06923795.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] # 1 90 202 291 291 122 100.0 9e-27 IKIFEFIVPSCYGVYLIHNLLILFFNRNIPYFIENKGTLAVFLLFILVSLTSILIIYLLG LIPTVGKYFTGVNQKVFYTKLNFLVKKNSN >gi|260196055|gb|ACQN01000012.1| GENE 2 313 - 2283 2050 656 aa, chain - ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 290 1 290 290 368 64.0 1e-101 MAFLELKNIYKSYFLGKEEFPVLKGINLDFELGDFVSILGESGGGKSTLMNIIGGLDRAF SGEVLLAGQKLNHSKEASLNKYRRETIGYIYQSYNLIPHLNVLDNVALALDMTTLTANER KKRALDLLEQVGLQDHVKKYPKQLSGGQKQRVAIARALASDPQVIIADEPTGALDSQNTE EVLALLNKIAAEGRLVITVTHSQHVADSGTRIVRLADGKIISDQRLKSAYNAKVESKLQS RKLPLVTSMRNAFKHFKYHFKRNLLIILGTAVGLFSVITFNGLGTGVKGYVNEQINSLVN PKQVLVTPYVKSSNNNQQNSYVNLTAGDKTVNTFSNKDISALKKVKNVSKVEKIHTLTNV DVSLNKKNTNITTVTNWTSVLNASSIKKGRMPKTGEVVLDKKNIAKSLTNNPNSLIGKTI TLTYAGLNKLGQKATIMIKVKVVGLTESSGSSQINAIGGNTIENALKAANMSTDVAALGV SASSMNTAKKVAKSINKLKISGKLRFTATAVSSMLDRIETYISLITNVLAGIAGISLLVS ALMIIVTMYMSVSDRTKEIGILRALGESKRDIRRLFTSESILLGIFSATFATVIALAVQS LANSALSQIAHYSFIQISFSNIISAFIISIVISLLAAILPARHAAGLNPIDALAGE >gi|260196055|gb|ACQN01000012.1| GENE 3 2434 - 3012 500 192 aa, chain + ## HITS:1 COG:no KEGG:LAF_1631 NR:ns ## KEGG: LAF_1631 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 1 185 44 232 232 124 39.0 2e-27 MQREEKKELNRKKIITAAKTLFLTKGIYATNVRDISKKSGISYVTMYKYFSDKNELVNLV CQELIDEAMANAYSKLNNDTLTFFEKLQQINFEAEFKQKYGPKVWVDFCSYTNNNPELTS YIEKKVNDSWLMIIRVGRKDKFIQASASDEQICNFLSLVLKLDHKEFKENIDAYWELFWY GLAGKEGHIKNK >gi|260196055|gb|ACQN01000012.1| GENE 4 3100 - 3891 922 263 aa, chain + ## HITS:1 COG:CAC3325 KEGG:ns NR:ns ## COG: CAC3325 COG0834 # Protein_GI_number: 15896568 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Clostridium acetobutylicum # 14 262 14 269 269 166 41.0 5e-41 MRWFKKISLFAGLIAISLGLVACSNQKSTNSEVLNKGTLTVGLEGTYAPYSYRENGKLKG FEVDLAKAVAKKAGYKIKFVPTKWDSLIAGLGAKKFDIVINDIAMTPERKKAYTFSTPYI YSKSALIMKKTNNTIKSAKDIKGLKIAAATGTANADNVKKFGGQNVSSTDFSTAMELIRQ NRVVAAMNSKEAFLYYQKSQHVTDLKYVEIPTNQIPAQEIGIMMSKGNSSLQKKINKALN DLREDGTLSQLSKKYFDGDITKK >gi|260196055|gb|ACQN01000012.1| GENE 5 3998 - 4690 766 230 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|297206405|ref|ZP_06923800.1| ## NR: gi|297206405|ref|ZP_06923800.1| possible surface protein [Lactobacillus jensenii JV-V16] # 1 230 2088 2317 2317 317 100.0 3e-85 ETNFDKLIAAIAKAEEAKTSEKYVYESDANKEAFDEMLDKAKAEMGQTNVSQKTVDQITD ELIKAINSLTGVKPAPVEPEVVPTKSEVNKSELQSQLDKGKEVQNSPQYQSATSESKAKL ETALDNGQKIYDDKASTQEQVNEASQSIETALANLTSTVEKPVSTPQTPTKSVVITKADS RLNKAKSNTLPKQAKLPQTGETTKANTWLGFGVIGLLLAVLGIKKKKEDE Prediction of potential genes in microbial genomes Time: Wed May 25 13:49:50 2011 Seq name: gi|260196054|gb|ACQN01000013.1| Lactobacillus jensenii 115-3-CHN cont1.13, whole genome shotgun sequence Length of sequence - 23270 bp Number of predicted genes - 17, with homology - 16 Number of transcription units - 10, operones - 6 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 2 Tu 1 . - CDS 6515 - 6703 75 ## - Prom 6738 - 6797 2.7 + Prom 6417 - 6476 11.2 3 3 Op 1 34/0.000 + CDS 6606 - 7283 631 ## COG0765 ABC-type amino acid transport system, permease component 4 3 Op 2 . + CDS 7283 - 8017 565 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 8029 - 8069 9.2 - Term 8016 - 8056 9.2 5 4 Op 1 . - CDS 8059 - 8691 585 ## COG2323 Predicted membrane protein 6 4 Op 2 . - CDS 8701 - 9144 519 ## LSL_1087 hypothetical protein - Term 9177 - 9203 -1.0 7 4 Op 3 3/0.250 - CDS 9205 - 9726 494 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 9765 - 9824 9.0 - Term 9772 - 9805 -0.4 8 5 Op 1 . - CDS 9832 - 10389 690 ## COG1309 Transcriptional regulator - Prom 10423 - 10482 3.2 9 5 Op 2 . - CDS 10487 - 11155 605 ## gi|256851593|ref|ZP_05556982.1| predicted protein - Prom 11328 - 11387 10.0 + Prom 11287 - 11346 8.5 10 6 Op 1 4/0.250 + CDS 11372 - 12727 1247 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 11 6 Op 2 . + CDS 12738 - 14060 359 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 14063 - 14127 6.8 - Term 14062 - 14099 4.7 12 7 Op 1 . - CDS 14117 - 14977 846 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Term 15001 - 15030 -0.5 13 7 Op 2 . - CDS 15033 - 16679 1519 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 16704 - 16763 5.8 14 8 Tu 1 . - CDS 16770 - 19184 3573 ## COG0495 Leucyl-tRNA synthetase + Prom 19375 - 19434 12.4 15 9 Tu 1 . + CDS 19468 - 20118 437 ## COG0671 Membrane-associated phospholipid phosphatase - Term 20094 - 20132 6.2 16 10 Op 1 4/0.250 - CDS 20140 - 21585 1318 ## COG0477 Permeases of the major facilitator superfamily 17 10 Op 2 . - CDS 21598 - 22791 1686 ## COG0192 S-adenosylmethionine synthetase - Prom 22866 - 22925 8.4 - TRNA 22940 - 23012 86.4 # Val TAC 0 0 - TRNA 23018 - 23089 64.4 # Glu TTC 0 0 - TRNA 23176 - 23266 57.5 # Ser GGA 0 0 Predicted protein(s) >gi|260196054|gb|ACQN01000013.1| GENE 1 1 - 6259 8705 2086 aa, chain - ## HITS:1 COG:no KEGG:Apre_1411 NR:ns ## KEGG: Apre_1411 # Name: not_defined # Def: sugar-binding domain protein # Organism: A.prevotii # Pathway: not_defined # 274 999 1253 2000 2126 185 29.0 2e-44 MKFSNIRKRLTLKSAKQRQNWSFRKTTIGLCSVLLSTTLLWGITNIQHNSVVVRAENTAN SEQSLFTSQQNISGAQGITSYVGISSADGSSFTLNDGSAISITYPTLDATSSRTDYLPLS DITLSPYGTKNFTFYIYSKQDYGRTLSQLNYNITQGTNTVIVASYSSKLGNGINYNNFKV YQAPELTEVAKKGLNLEPGASLPDPSTVLANYNTVKKGAMKIEWGELDTQTTGQKTAKLN ITYNGSGAWGMRGEGGATYTRTLDVPVAIYSVKDPVKTPVPKAYQTDLTTEYKEKIIAAI KEANPNAQDVTVDSKGNATVSFPGETKAEVTSDRTIKDVDKSELDAAIKDGTTTKTQVVY INADSSKKTAYDQALTDGKSLYDSDTASQDEIDSQVSQIKVAKEALNGKETNKTGLEEAI KKAEEEKGKESYGNASNAAKSALDLAIQKAKDVLNDENASQEDVDKAISDLNDAISGLSN SQAKDVQAPTKTPVPEAYRDNLNDEYKNRIVEAVKEANENADLVVVDNLGNVVITFKDGS IAKLSKDETVKDVDKTALNSALSEYSDTIRTPEYYNASQDAKDNYDKTKADGQEASASTT ASQEMVDTATTAITNAKKALDGKVTDKQQLQDLYAKGNSTKESQVYTNGSTAGQNALKEA LATAQQVIDNDQATQEEVNVAVKQLQDALDLLAKSQAFFANNPEKVAIPKAYYQKQLTRN LKSKVENEIRQANPDVVDTVTVNDPGAANVVFKDGSKKYFENTVTTKEVDTSRLKQLTDE QESIHKTGLYINASEGAQSRYDSTIGDGLDGLENPTLTQDQVDTLADAIENAKSMLDGYE TNKQALKELLDEAPSYKLTEPYTTASDEARQAYDQAINAGSGVYNEDTFTQKEVDTMVQI IEKAKRDLQESSDEAASKINLSINKTPVGDKESLTEGEKDKVKAEVQKVNTDPDILEITT NNDGSVNVKFKDGSSVPIDSRYTIKETDKTALKNAIDLEDYVKTQQTVNYNGQDIKIYES ATAVARKEYDDAIEAGKVVYTNDKATQDEIDAATKRINDAVKGLVSAATNAQVNFNYGFG LTPVINLDNVSDSEKTIIKSKIAEGNKGDDGQTLVDIDATTIDAEGSAVVAMKDGSKVHV DKKFTVRAVNKSVLQKDIEIANDLKGNKTEYDKATDAARANFEEKLTNANAANDNPTSQE DVDKAASELEQAMSDLIKSIKAASSKVKQPTTQIAVGRDRELYTKEEDNEKGKIEAAVRE VNPNASSVESDVYGNVTVHLSDGTTVVIDKSKTTKDTTKDALKDAIANAKNEEENGNIYK NASTQSKQDFDTALTKAQEVFDSTKSSQKEIDDATNSLKTAFETMADSVKTAQSKVNKDV ERTPVGNKTNITEKESLSIHDKVLAKNPNTTVTVDNEGNATVEFSDGSKGFVSNDYTTTN VDKSQLQASFDQATGIKDTDTVNNASTNAKEKFNEAYNQAKETLAKATATQDDVNNTKSA LDEAMQNLSNSLASAIIAPERVAVPKGIQGNITEESGYVAKIQDAIKVANEGKIEQVAVA SDGSAIITFTDGSIAKLTSGQTIKDVDKSALVNAVNEAPSVKGTAKYYNADAALQTAYTD QITVGQTMLDRDSDSQEAINEQVSNIQTAKNNLNGIDTNKEQLRILYGTVDSVKAGSTYA NASAKAKTDLDSAANRAKAVLDNDSSTQKEVDDAYAALDEAIKALSDSQATKMGAVTPVE VPKSIQSNLTDDFKSEIRDAVKSADENVDIVKVDNEGNVTVIMKDGSTTSLDKSKTVTDV DKSALRPLVEEADTVKASAKYYNADDELKDAYDTAISHGNDILTSDSATKEDVAQAVTDI TKAKNALDGAETNKDGLRATYTNATELKDGDSYKLGTAAAKEAFDKAYSDADSILKKDNA TQKEVNDANDALQKAMAGFGDSEASKIIMPEKTVVPEYYQDNLEDSTNPYAQKIIDAIKA KNPKATDDITFSGDEAVVKFEDGSQIGVKKINLISNVSFDTLKPLVDEANDVMESVKYKN ADRELQTAYITTVNKGSKALGDTKIDQSSVDTLVTEISNAKNALNG >gi|260196054|gb|ACQN01000013.1| GENE 2 6515 - 6703 75 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIPNIKEIIAIGIVYFNPAINISGTLVLIISHMINPFYILFLYLNKIQLLFVRNSFNNLS SY >gi|260196054|gb|ACQN01000013.1| GENE 3 6606 - 7283 631 225 aa, chain + ## HITS:1 COG:mll3859 KEGG:ns NR:ns ## COG: mll3859 COG0765 # Protein_GI_number: 13473305 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Mesorhizobium loti # 3 222 6 215 226 197 51.0 1e-50 MWEIIKTSVPEILIAGLKYTIPIAIISFILGIIIASITALIRMSTPKGNPLKKSLWQLLK GFFTFYVWIFRSTPLLVQLFIVFYGLPSIGIQLGAWTAGILTFSLNTGAYASETIRASIS SVPQDQWEAAYSIGLTYRKVLSRVIFPQAVRIAIPPLSNSFIGLVKDTSLASSITLVEMF MVSQEIASHNYQPMIMYSIVAIIYAIFCSLLSLLQLYLERRFEVK >gi|260196054|gb|ACQN01000013.1| GENE 4 7283 - 8017 565 244 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 240 1 240 245 222 46 2e-57 MLKLTNINKSYENNKILDNINVVFPKNKTTVILGPSGAGKSTLLRSINLLDQPENGTIEL DDIKVNYNENLSNNEILQLRRKSAMVFQSWSLFPHMTILENIIEGPTQAKNENKDQAIQE GKKLLAEVGLEGYENRYPSELSGGQQQRVSIARALALKPSYILFDEPTSALDPELEAQIL HLMQKLALEGKSMIVVTHNMDFARKVADKVIFLEKGHVIFDGECKDFFNNNNQRIQDFLN AMKF >gi|260196054|gb|ACQN01000013.1| GENE 5 8059 - 8691 585 210 aa, chain - ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 3 210 4 211 211 227 51.0 1e-59 MDYTTVTLKFAIGMLCLILQINLFGKKNLAPSSPIDQIQNFVLGGIIGGIIYNESITVIQ FVIILLIWTLIVFVIYVLKARLRLARILIDGQPFNIIKNGQIQVKTCVKNGITANEIMMR LRANGINDTSQVKSAFVDANGQFVVIENNESNVKFPVINDGQVNHDVLDLIHKDEKWLNE QLKQKGINNAVDVYLAEYIRGRLRIVGYPK >gi|260196054|gb|ACQN01000013.1| GENE 6 8701 - 9144 519 147 aa, chain - ## HITS:1 COG:no KEGG:LSL_1087 NR:ns ## KEGG: LSL_1087 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 146 1 146 147 100 39.0 1e-20 MDFYSLDYIQNQESFNSTLIMGSIVVSIILLIWAVIFYFRHNYDIKYRDFAIIFGLFISI QVFRQVENYNQSRQQGNKTSQMAPFIKSVARENNVKTKNVYVNSSQLADGIIVKIQDRFY RVTLSSDAASYSLVRTHLVSKQVKYHD >gi|260196054|gb|ACQN01000013.1| GENE 7 9205 - 9726 494 173 aa, chain - ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 11 173 9 171 172 102 36.0 2e-22 MNFEIIPVEKSERALHYLVNLSCDAFKATFSPYYDKGEIEAYLDLAYNPAILRKELSSES SRFYFIEVDGEKAGYFKVNWDKSVTNEKYLHDFELQRLYLLPKYQKQGLGQKAMDFVLNL AQKLEKQTVWLEVWEGNKVALNFFKENNFVAVSNNAFPLGHYAQTVKVLKKDL >gi|260196054|gb|ACQN01000013.1| GENE 8 9832 - 10389 690 185 aa, chain - ## HITS:1 COG:SP2234 KEGG:ns NR:ns ## COG: SP2234 COG1309 # Protein_GI_number: 15902037 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 7 171 8 175 180 94 32.0 1e-19 MTDARVVKTKQKLYRAMGELLDEKSFDEITVIDLAQQAHTTRKTFYSHYQDKIELIEEYE NQIFDELSKLQAHYKFLDKNYITTYFRHIGNQDLLLKGLLSYNGSLEIQNLFKEGMYQEA QKLLSLKIKDKTKLNYAALIFANGLFGVTQYWLMNGKKESPEEMADIIIHLGLLPGAIFE ENHRN >gi|260196054|gb|ACQN01000013.1| GENE 9 10487 - 11155 605 222 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851593|ref|ZP_05556982.1| ## NR: gi|256851593|ref|ZP_05556982.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 222 9 230 230 335 100.0 1e-90 MKKAKFKLDKTFIIGLLAIVVVLVIGTVYIVKTNDISSENSKTLQTTKVSNNTKKVAPSA KDNVKNQHLIINVDDNVENVTINNVNTLVNKNNTDLKKLNCYQFGVCVVSFVSKSIHNPN YLALWNNALKNKQFNINLVSSSNGISAFMNKGTVYKVKVDDREVYYSIDKNKNVHFYDGS NMSSLIEIGSAKLGQIIFVVNRPQNQSEVKHVIKYVNVNSTN >gi|260196054|gb|ACQN01000013.1| GENE 10 11372 - 12727 1247 451 aa, chain + ## HITS:1 COG:SPCC1672.03c KEGG:ns NR:ns ## COG: SPCC1672.03c COG0402 # Protein_GI_number: 19075374 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Schizosaccharomyces pombe # 8 446 10 444 527 248 34.0 2e-65 MNISKYILANICHPPEYGKVEFTNHALIGLDRSGIIQFLLKPTDATYQEKLKQAKKEERL IAFDDSKLILPGFIDLHIHAPQWPQAGVALDSPLYDWLDNCTFPLESKYSNPEFSKEVYN NLVDTLLAHGTTTALYFASANKNTSLSLAKICAKKGQRAFVGKVVMDNPDQTPDYYRDES SQAALLETEDFCKEVEKLAQNTLQGIYPVITPRFIPSCTDSTLKNLGELAQTHNYYVQSH CSESDWEDSYVFNRFGKSDAEMLKSFGLLGPRSIMAHCVKLDTTGANIFAETGTSIAHCP ISNAYFANSVLPVAKFQRLGINIGLGSDISGGFSPSIYDNLRQAVIVSRLLEDGVDSSLP SEKRGKANSRITLAKAFWHATVGGGQALKLKLGLFKKDYSFDAQVIDLSTLPTYGGFDNQ DSLWQKALYLTNSPSIKAVFVQGKKVYQNQL >gi|260196054|gb|ACQN01000013.1| GENE 11 12738 - 14060 359 440 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 13 439 8 422 447 142 27 2e-33 MANKNGNLTIGPDQNVPTSQAIILGLQHVLAMDVYVPPFIIATSLALSSSDASGLIQSTF LGAGLATLVQVLFFMKLPVCQGPSFVPIGAIIGIYLGTSGKMGSVLGACLVGAIIVTLFG FLGVYQWIVKTFIPPLVSGTIITIVGLSLIPSALKDNIYTVTKNGPSLSQNITLAIITGI TLIFCSMISDYLPKWGKFFRIASVIIALFVGCVFASFMGVLNLSSVSSAPLFSIPHIAFI NYHLSFSWSTILTMLIIYMVLLAETTGTWFAVSSVIDEPLSDKQINHGVIGEGVGCILAA LGGATPVTGYSTNAGVISITGVASRKVFVFAGVWFVILSFIGKLSALINAIPAAVIGGVF AIVTIIIMLSGFRVIKNYDFNEREMYVVGIPLVFALALIFLPSSATTHLPQFLKFLFDSP VAIGAIIAIIMNKVLPEKNA >gi|260196054|gb|ACQN01000013.1| GENE 12 14117 - 14977 846 286 aa, chain - ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 1 286 1 289 289 209 41.0 4e-54 MKKILKIFYCIVACLTLTACSSTKKAEKSASSVPATNAKQADKRVVTFFFHGWGSSINAE KQMVNAAKKAGVTKDVLTVIVDSNGVAHIQNAISKQAKNPIVKVGYLDNENTNYHTDAKY AYAAIMAVQKQYHYKKMNLVGHSMGNMSIMYLLMDYGKRKSLPKLEKQVDIAGHFNGIIA YDKTSYTTLNHDGKPEQMNNIYKELLKMRSLYPKGVSVLNIYGNLNDGSNSDGIVSNVSS RSLKYLIAPHVKSYTEKEILGKMGQHSKLHENKQVDQVLIKFLWNK >gi|260196054|gb|ACQN01000013.1| GENE 13 15033 - 16679 1519 548 aa, chain - ## HITS:1 COG:lin1665 KEGG:ns NR:ns ## COG: lin1665 COG2244 # Protein_GI_number: 16800733 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 13 541 3 536 537 331 35.0 2e-90 MKNKNIENKDSQAQLLKGSAWMTAGSILSRILGALYIIPWYAWMGKDGNLANAITAQSYN IYSLFIIVSTAGIPGAVAKQIAKYNALNEYGVSRKLFHRGLLLMIGLGIVCAGLMFGLAP ILAGQDPRQIPVLKSLSYAILIIPLMSIMRGYFQGFNDMMPSALSQFIEQLARVAWMLMT AYVIMKMQDGNYLRAVTQSNLAAAIGAMFGILLLVYYYQKQKREMDDLVENSNNELQVST NSLLLEIVQQSIPFIIIDSGINIFQLVDQYTFHPIMASFVHASFDQIESMYALFGLNANK LIMIIVSLSTAMAVTAIPLLSGARARRDYQDIRKQIENTLELFFFFMIPSAFGMAAISTP IYTIFYGFDPVGSNVLFIASFTAIILGLFTVLMAVQQGLSENILAIKYLVVGLIIKCIIQ YPLIRLFQINGPLLATDLAFMFTILLSLKHLKVAFHFNFKRTKRRFIGIVSFSAIMFIVI FALQFILGRFIPADRRVTAMILVGICVGVGILVYAFLALISGLAHSILGPKISKLERKLH INYYNPKH >gi|260196054|gb|ACQN01000013.1| GENE 14 16770 - 19184 3573 804 aa, chain - ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 2 803 3 802 803 1153 67.0 0 MYNHKVVEKKWQKYWAEHNTFKTGTDPKKKNYYALDMFPFPSGKGLHVGHPEGYTATDIV SRMKRAQGYNVLHPMGWDAFGLPTEQYALKTGQDPAVVTDENIANFKKQLNMLGFSYDWD REVKTSDPNYYKWTQWVFEQMYKMGLAYEAEVPVNWSPDLGTVVANEEIVDGKTERGGYP VYRRNMRQWMLKMTAYADRLLEDLDELDWPEPVKEMQRNWIGRSEGAQVRFKIKDSDKNF EVYTTRPDTLYGVCYTVLAPENPLVKEITTPEQKAAVEAYIKEVESKSDLERTDLNKDKT GVFTGAFAINPVNGEEVPVWIGDYVLASYGTGAVMAVPAHDQRDYEFAKKHDLPIKRVIE GGDLDKEAFVDDGVHVNSDILNGLNIEDAKKKIIAYLEEHNLGEAKVNYKLRDWDFSRQR YWGEPIPVIHWEDGETTLVPEDELPLVLPHATDIKPSGTPESPLANLTDWVNVVDENGRK GKRETNTMPNWAGSSWYYLRYVDPHNNEKLGDYELFKKWLPVDLYIGGAEHAVRHLLYAR FWHKVLYDLGVVPTKEPFQRLYNQGLILKDHDKMSKSKGNVVNPDEVIEEYGADSLRTYE MFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLDPIVSDKVVEENDGSLDKIYNQT VKKVTEDFESLHFNTAISQMMVFVNEAQKAKTIPMEYAEGFVKLLAPVAPHMMEEIWQVL GHNESISYAEWPKFDPEKLVESTVEIMVQVNGKLRGKFSAAKDAAKDELEKAAMADHHVP KFLEGKDVKKVIVIPNKIVNIVAK >gi|260196054|gb|ACQN01000013.1| GENE 15 19468 - 20118 437 216 aa, chain + ## HITS:1 COG:XF2574 KEGG:ns NR:ns ## COG: XF2574 COG0671 # Protein_GI_number: 15839163 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Xylella fastidiosa 9a5c # 71 205 86 218 227 78 35.0 8e-15 MKEKNNLIRFSILTLFSCAFYVFWVFSVAYQASFIKGFDKLFISLIANQNKTELFILKHL TVLANTPVVIGYTVVLVIFLLFKKKYALASFSTFVMVTANGNNWLLKHIVQRPRPTVPHL VKATGYSFPSGHSAGSMSICLVLIVVVIVLMKKGILKRLLLITLPILPFIIGMSRIYVHV HYPSDVVGGFIEAITFFLLGLLIFRTKITQQKKVRD >gi|260196054|gb|ACQN01000013.1| GENE 16 20140 - 21585 1318 481 aa, chain - ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 475 1 479 491 331 40.0 2e-90 MGKRRIAIVTFAIFLTTFMSAVEGTIVSTAMPTIVSDLDGLEIMNWVVSTFLLMTAISTP LYGKMADRFGRKPVFLFGIFVFVLGSCLCGLSQNMLQLIIFRVVQGLGSGAIQPVAITML ADMYPLNKRAKMIGLNSSFWGLASVIAPLLGGFIVQHLTWHWVFYINLPFGILAFLLISF FFKEEITPKEGKLDLQGTIFLVSFLLAFMLFLQGLSEKYSILILGILIVLSCASLVLFKK AEQKAADPLMPLEMFRNKEFVAQNAITLLIMGVVIGLEFYLPTWMQGINGLSASIAGFAV TPSALMWVVGSFVVGNLMTKLGSKKLIAYSIVLLLIANLSLIIIPRYTPFWVFCTITFFH GLTFGAITTTTQVKSQVIVGKENIGVATAFNTLMKYLGQTIMVSIYGIVFNSVMANKLAQ YPKLNMSMMNKVVNSQKVHQLASNLIPDLRNVLHISLQSVYITSFIVIILALIINQTYRE K >gi|260196054|gb|ACQN01000013.1| GENE 17 21598 - 22791 1686 397 aa, chain - ## HITS:1 COG:BH3300 KEGG:ns NR:ns ## COG: BH3300 COG0192 # Protein_GI_number: 15615862 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus halodurans # 3 390 7 395 399 550 70.0 1e-156 MEKRLFTSESVSEGHPDKIADQISDAVLDAILKEDPNGRVACETIVTTGMVFVFGEISTS AYVDIQSVVRQTILDIGYNDPSLGFDGNNCAVMVDIDEQSPDIAEGVDHSIETRDSKDSD ILDKIGAGDQGLMFGYAIDETPELMPLPISLAHRLMRKVAELRKNHILDWLRPDSKAQVT VEYDENDQPKRVDTVVISTQTDAEVSNEEIKRAMIEDVIKVVIPEKLLDSDTRYLINPSG RFVIGGPKGDSGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSASYAARYVAKNIVAA GLAKKCEVQLAYAIGVAHPVSVRIDTEGTGKVANDVLVKAVRAVFDLRPAGIIEMLNLRR PIYRQTAAYGHFGRTDIDLPWERTDKTQALLDFIKEN Prediction of potential genes in microbial genomes Time: Wed May 25 13:50:53 2011 Seq name: gi|260196053|gb|ACQN01000014.1| Lactobacillus jensenii 115-3-CHN cont1.14, whole genome shotgun sequence Length of sequence - 82070 bp Number of predicted genes - 65, with homology - 65 Number of transcription units - 26, operones - 15 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 5 - 77 86.4 # Val TAC 0 0 + TRNA 84 - 156 83.3 # Lys TTT 0 0 + TRNA 171 - 252 61.1 # Leu TAG 0 0 + TRNA 283 - 355 80.3 # Thr TGT 0 0 + TRNA 367 - 438 79.2 # Gly GCC 0 0 + TRNA 451 - 536 65.5 # Leu TAA 0 0 + TRNA 546 - 619 70.9 # Arg ACG 0 0 + TRNA 624 - 697 87.7 # Pro TGG 0 0 + TRNA 729 - 802 73.7 # Met CAT 0 0 + TRNA 813 - 886 87.0 # Met CAT 0 0 + TRNA 921 - 994 73.5 # Met CAT 0 0 + TRNA 998 - 1071 65.5 # Asp GTC 0 0 + TRNA 1079 - 1151 78.2 # Phe GAA 0 0 + TRNA 1173 - 1243 66.1 # Gly TCC 0 0 + TRNA 1250 - 1323 91.8 # Ile GAT 0 0 + TRNA 1327 - 1416 53.3 # Ser GCT 0 0 + Prom 2518 - 2577 12.9 2 2 Tu 1 . + CDS 2643 - 5381 3244 ## COG1511 Predicted membrane protein + Term 5399 - 5448 8.3 + TRNA 5582 - 5653 64.4 # Glu TTC 0 0 + TRNA 5691 - 5781 63.8 # Ser TGA 0 0 + TRNA 5790 - 5863 76.8 # Met CAT 0 0 + TRNA 5867 - 5940 65.5 # Asp GTC 0 0 + TRNA 5946 - 6018 78.2 # Phe GAA 0 0 + TRNA 6028 - 6109 65.6 # Tyr GTA 0 0 + TRNA 6114 - 6184 60.9 # Trp CCA 0 0 + TRNA 6198 - 6273 58.5 # His GTG 0 0 + TRNA 6323 - 6393 67.2 # Cys GCA 0 0 + TRNA 6421 - 6504 61.6 # Leu CAA 0 0 + Prom 6430 - 6489 80.4 3 3 Op 1 25/0.000 + CDS 6536 - 7774 1441 ## COG0438 Glycosyltransferase 4 3 Op 2 4/0.000 + CDS 7767 - 8813 910 ## COG0438 Glycosyltransferase 5 3 Op 3 . + CDS 8810 - 9811 559 ## COG0392 Predicted integral membrane protein + Prom 9821 - 9880 6.0 6 4 Op 1 1/0.000 + CDS 9912 - 11987 2322 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 11997 - 12035 1.3 + Prom 11992 - 12051 6.0 7 4 Op 2 . + CDS 12084 - 13391 1571 ## COG0773 UDP-N-acetylmuramate-alanine ligase + Term 13395 - 13438 8.6 + Prom 13399 - 13458 8.0 8 5 Op 1 4/0.000 + CDS 13495 - 16152 2619 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 9 5 Op 2 4/0.000 + CDS 16165 - 16992 629 ## COG0266 Formamidopyrimidine-DNA glycosylase 10 5 Op 3 1/0.000 + CDS 16992 - 17606 528 ## COG0237 Dephospho-CoA kinase 11 5 Op 4 6/0.000 + CDS 17584 - 18051 557 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 12 5 Op 5 8/0.000 + CDS 18068 - 19411 1156 ## COG3611 Replication initiation/membrane attachment protein 13 5 Op 6 . + CDS 19415 - 20329 675 ## COG1484 DNA replication protein 14 5 Op 7 . + CDS 20354 - 22309 2139 ## COG3590 Predicted metalloendopeptidase + Term 22545 - 22586 8.0 + Prom 22312 - 22371 5.0 15 6 Op 1 16/0.000 + CDS 22599 - 24530 2601 ## COG0441 Threonyl-tRNA synthetase + Term 24677 - 24714 1.1 + Prom 24532 - 24591 10.9 16 6 Op 2 36/0.000 + CDS 24759 - 25268 402 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 17 6 Op 3 46/0.000 + CDS 25295 - 25495 345 ## PROTEIN SUPPORTED gi|227526539|ref|ZP_03956588.1| 50S ribosomal protein L35 18 6 Op 4 . + CDS 25539 - 25895 592 ## PROTEIN SUPPORTED gi|227526538|ref|ZP_03956587.1| ribosomal protein L20 + Term 25909 - 25946 4.0 + Prom 26037 - 26096 11.1 19 7 Op 1 4/0.000 + CDS 26129 - 26800 233 ## PROTEIN SUPPORTED gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P + Prom 26810 - 26869 3.0 20 7 Op 2 6/0.000 + CDS 26893 - 27294 285 ## COG1012 NAD-dependent aldehyde dehydrogenases 21 7 Op 3 . + CDS 27309 - 28715 1567 ## COG1454 Alcohol dehydrogenase, class IV + Term 28730 - 28772 4.0 + Prom 28722 - 28781 7.5 22 8 Op 1 6/0.000 + CDS 28803 - 29333 593 ## COG2179 Predicted hydrolase of the HAD superfamily 23 8 Op 2 1/0.000 + CDS 29318 - 30427 1082 ## COG1161 Predicted GTPases 24 8 Op 3 9/0.000 + CDS 30441 - 31070 765 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 25 8 Op 4 6/0.000 + CDS 31138 - 31671 672 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 26 8 Op 5 . + CDS 31674 - 32021 383 ## COG0799 Uncharacterized homolog of plant Iojap protein 27 8 Op 6 . + CDS 32024 - 33178 1252 ## COG1323 Predicted nucleotidyltransferase 28 8 Op 7 1/0.000 + CDS 33178 - 33723 568 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein + Term 33809 - 33854 7.0 + Prom 33814 - 33873 8.2 29 9 Op 1 40/0.000 + CDS 33898 - 34620 922 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 30 9 Op 2 3/0.000 + CDS 34595 - 36163 1611 ## COG0642 Signal transduction histidine kinase + Term 36173 - 36203 2.0 + Prom 36171 - 36230 6.0 31 9 Op 3 45/0.000 + CDS 36292 - 37161 289 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 32 9 Op 4 6/0.000 + CDS 37164 - 37901 733 ## COG0842 ABC-type multidrug transport system, permease component 33 9 Op 5 19/0.000 + CDS 37971 - 39023 1011 ## COG4585 Signal transduction histidine kinase 34 9 Op 6 . + CDS 39026 - 39631 552 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 39633 - 39681 10.3 35 10 Op 1 . - CDS 39666 - 40640 882 ## COG0706 Preprotein translocase subunit YidC 36 10 Op 2 . - CDS 40697 - 40972 413 ## COG0068 Hydrogenase maturation factor - Prom 41190 - 41249 7.2 + Prom 40967 - 41026 4.0 37 11 Op 1 . + CDS 41058 - 41825 178 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 38 11 Op 2 1/0.000 + CDS 41898 - 42248 509 ## COG1733 Predicted transcriptional regulators + Term 42494 - 42535 9.5 + Prom 42417 - 42476 3.2 39 12 Op 1 40/0.000 + CDS 42547 - 43596 1186 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 40 12 Op 2 . + CDS 43597 - 46005 2856 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 41 12 Op 3 . + CDS 46072 - 46548 880 ## COG0782 Transcription elongation factor + Term 46568 - 46618 10.2 - Term 46560 - 46598 6.2 42 13 Tu 1 . - CDS 46614 - 49172 1889 ## COG4485 Predicted membrane protein - Prom 49366 - 49425 7.9 + Prom 49110 - 49169 7.0 43 14 Op 1 . + CDS 49385 - 51409 2020 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 44 14 Op 2 . + CDS 51485 - 51634 266 ## PROTEIN SUPPORTED gi|227526513|ref|ZP_03956562.1| 50S ribosomal protein L33 + Term 51642 - 51679 4.8 45 15 Op 1 4/0.000 + CDS 51688 - 52236 671 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 46 15 Op 2 3/0.000 + CDS 52274 - 52963 899 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 47 15 Op 3 1/0.000 + CDS 52963 - 53172 165 ## COG4483 Uncharacterized protein conserved in bacteria 48 15 Op 4 . + CDS 53217 - 53618 379 ## COG0607 Rhodanese-related sulfurtransferase + Term 53632 - 53669 1.0 - Term 53612 - 53663 10.5 49 16 Tu 1 . - CDS 53708 - 53887 347 ## LGAS_1381 hypothetical protein - Prom 53910 - 53969 8.0 50 17 Op 1 . + CDS 53956 - 54876 1040 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 51 17 Op 2 1/0.000 + CDS 54869 - 56116 1275 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance + Term 56134 - 56161 0.1 + Prom 56150 - 56209 11.2 52 17 Op 3 . + CDS 56352 - 57707 1527 ## COG0174 Glutamine synthetase + Term 57733 - 57777 8.4 - Term 57728 - 57759 3.4 53 18 Tu 1 . - CDS 57763 - 58500 483 ## COG0775 Nucleoside phosphorylase - Prom 58541 - 58600 5.6 + Prom 58570 - 58629 9.1 54 19 Tu 1 . + CDS 58710 - 59792 1432 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein + Term 59820 - 59881 14.4 + Prom 60054 - 60113 6.3 55 20 Tu 1 . + CDS 60142 - 61320 1118 ## COG0477 Permeases of the major facilitator superfamily + Term 61329 - 61376 10.3 - Term 61323 - 61357 4.0 56 21 Tu 1 . - CDS 61368 - 61931 304 ## gi|256850870|ref|ZP_05556259.1| predicted protein - Prom 62160 - 62219 9.7 - Term 62034 - 62075 4.8 57 22 Op 1 . - CDS 62222 - 64600 3161 ## LBA1373 x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) 58 22 Op 2 . - CDS 64612 - 64968 313 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 65151 - 65210 79.6 + TRNA 65132 - 65208 88.0 # Arg TCT 0 0 - Term 65275 - 65338 7.2 59 23 Tu 1 . - CDS 65348 - 66775 1339 ## LSA1108 putative chromosome segregation ATPase - Prom 66974 - 67033 9.3 60 24 Op 1 . + CDS 67048 - 68010 1143 ## COG1482 Phosphomannose isomerase 61 24 Op 2 . + CDS 68024 - 68416 336 ## LCRIS_00750 integral membrane protein 62 24 Op 3 40/0.000 + CDS 68416 - 69138 944 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 63 24 Op 4 . + CDS 69156 - 70610 1547 ## COG0642 Signal transduction histidine kinase + Term 70670 - 70717 6.2 + Prom 70813 - 70872 9.1 64 25 Tu 1 . + CDS 71112 - 79937 12577 ## MW1324 hypothetical protein + Prom 80056 - 80115 1.9 65 26 Tu 1 . + CDS 80276 - 82070 2239 ## Apre_1411 sugar-binding domain protein Predicted protein(s) >gi|260196053|gb|ACQN01000014.1| GENE 1 1509 - 2447 830 312 aa, chain - ## HITS:1 COG:L39484 KEGG:ns NR:ns ## COG: L39484 COG1597 # Protein_GI_number: 15673780 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 8 289 3 281 302 129 31.0 1e-29 MKNKNPKFSIIVNLKAGSGHAKKIWPIVERELKRRNLVYECFYTKAIGHAQTLAKEIAHK RECDIILVLGGDGTLHEVINGLLFAKQKTPIPVSYIPAGSGNDFAKSYGISNTPIKALDQ IINCQNIQNICIGHYIEKIGGREGFFINNLGIGFDARIVHKTNSSLTKKGLNKLNLGQFS YAMKGFSAFLTQNTFELIIGERHFKKAYISIVNNVPYIGGGIRVSPEMSPFKNGLELFVV EKKNIPNLLKVLSLFIQGKVDKSPYVHRFKNNKLAIKTKNSQFIHLDGEEFAKAEVNLIL DTQTYPFWQKHN >gi|260196053|gb|ACQN01000014.1| GENE 2 2643 - 5381 3244 912 aa, chain + ## HITS:1 COG:lin2460 KEGG:ns NR:ns ## COG: lin2460 COG1511 # Protein_GI_number: 16801522 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 16 898 18 908 927 411 32.0 1e-114 MEKVNKWLKNPSFLKLIMISVAVLAPIFYSLSFIKSVWDPYAGAKNLPIAVVNEDKAVKY NKKTLAVGDQTVAQLKKNHDLKWVFVNENAAREGLKNREFYTVVTIPSDFSKNAATVMSK KPKQMQLKYKTNDSLNYLAETMSDVGIKQLNTMIRSAVTKAYATAMFSQLKTLGAGMNKA ASGAQQISDGTVTLTNGTKQYTAAVSQINDGIQTLKVSVTPLKAGASQLASGSSTLANGV SQYTAGVAKLNSGVNTLNSKSGDLLTGMNTFNSGLTKFTAGNAQLNTGLNTLSTNSAALR AGATSLQSASNQFGLLNNGASQVASGVQTFNNNLQSSNIVSSLTQALSMQEQVTSLEKQL STVQSLLKQLSGIDVNALTTAVDKLQNQAFTTAVDMGNLYTSLDDNQKISDDADQINSLL NSDKTLSSDTKAKLANLATEIKSKANDSTTQINSANNSWGNLLGVMLDTQSTLQPQIDTV QSLSKQLPALQSTMTQAQSLLTQTDTLLAALKKNQGLLTAMPTQLASLQSATSQIAAGTQ KLADSTGSINTLVNGINQYTNGVDTAANGAAQLASNSDRLISGFKLLYDGTNQYTQGVSQ VKTGTATLVSNNTTLNNGASQLSTALSSLNSQVPSLIDGVNKLATGTQTLNGNSNKLVNG MTKISSGSSQLATQLSNGADKVNSNIGTTNNAEMFATPTSLQHTSTSKVPNYGHALAPFA MATGLFIGVLIFTLEFPANRRRKAPKDAIRVLNDEFKRAVSVSLAMVVILNVIMMLSGLQ VDHVLDLFWICLVYTLAQMAIMQFLTLIMGRLGTIIGLLLFIASIGGAGGMFPMQVTNSF FNAIHPLLPMTYAINGLRQAITGGLGNSYASINALVLLGVAVLFYLLFLLAASTLIKKEV LEVESKQITQEI >gi|260196053|gb|ACQN01000014.1| GENE 3 6536 - 7774 1441 412 aa, chain + ## HITS:1 COG:SPy0516 KEGG:ns NR:ns ## COG: SPy0516 COG0438 # Protein_GI_number: 15674620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 25 408 1 387 444 360 46.0 4e-99 MSFFVAQIASCTSYLYNSNHGGFFMNIGLYTDTYFPQISGVATSIQTLKRALEKQGHNVF IFTTTDPHVGKGVVEPNVFRFSSVPFISFTDRRIAFRGLFEATRVAKEVQLDIVHTQTEF SMGLIGKYVAHQLNIPAIHTYHTMYEDYLHYVLNGNLLRPVHVKQFTKAYLKNMDGVVAP SKRVENLLERYGVQVPIEVIPTGVDIEAMNGDQQRDVRPELGIDSDDLVILTLSRIAAEK KIDRILDLMPELIGQFPNLKLVIAGDGPDVDLLKNQVERLSVEDYVIFTGDVPHEDVGNF YRMADLFVSASDTETQGLTYIEALAAGTKSVVFDTDYTENVFDDIEFGQVFNSQKEMKEA IISYLKQGKQPINPSKLKTKLENISAAHFGKEVIGFYQAAIDTHSNKEVNDD >gi|260196053|gb|ACQN01000014.1| GENE 4 7767 - 8813 910 348 aa, chain + ## HITS:1 COG:lin2699 KEGG:ns NR:ns ## COG: lin2699 COG0438 # Protein_GI_number: 16801760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Listeria innocua # 1 333 1 334 341 346 51.0 4e-95 MIRINMFSQADSVKGQGVGSAYQELINLMRTRLVDDFYMTINKYGQSDLTHYHTINPTYF INSFSPARGRKIGYVHFLPETLEGSIKLPQPAKKAFYDYVINFYKRMDQIVVVNPIFIDK LVAHGLDRNKIKYIPNFVSKEEFYTKSTVEKNAFRNQLGIPLDKFVIFGDGQVQERKGVD DFAKLAEANPDIQFIWAGGFSFGKITDGYDHYRNLVENPPKNLIFTGIVKREELVNYLNI ADLFLLPSFDELFPMSVLEAFSCGTPVLLRNLDLYKAIIDGYYMYGDDFTTLNEQIRTIK ANPDLLKKYASLSLKASEKYSEEHLAEIWRNFYLEQYELGVKLGQIHL >gi|260196053|gb|ACQN01000014.1| GENE 5 8810 - 9811 559 333 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 6 328 9 333 357 137 29.0 2e-32 MRRNYFFGFIAVLVISFLVLYWDLSQTNFNALLASSKNINYGFIILILLVILCTYFCEAA ILFVLSGKQKFIDLLHFYRVPLIQALFNAITPMATGGQPAQLIALKQMKIEFGPASSLLL MKFIIYQLVVFFAYIWAFLTGHQLLGEMKHFNIIIVISFLIHMSTIIFLLFGMFARNLLK KIGAFIFKLGIRFISAEKVANFQTAFDQQVDEYYCESQRLFQHKKRLIISFILTCIQLTL FYSVPFLTIKALNLSGSWLELVQLNILVVLFMAIVPIPGASGGAELGFQALFKFFVKNNA QLVMGMFIWRFATYFFGMLLGVIAWLIRPKKEN >gi|260196053|gb|ACQN01000014.1| GENE 6 9912 - 11987 2322 691 aa, chain + ## HITS:1 COG:BS_yfnI KEGG:ns NR:ns ## COG: BS_yfnI COG1368 # Protein_GI_number: 16077793 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Bacillus subtilis # 11 653 18 653 653 593 50.0 1e-169 MFRAKKIADWLFHTKLGYFSVVLTLFWIKTYLIYITKFSLGATGSMQNFLLLLNPIPAGM LLLGIGLFFKGRKSYWIIWIIDFIMSFWLFANILYYREFSNFLSFAIMSTSGSTSDNLGK SIAGITKATDFLAFLDLVIILALILFKVFKIDVRPLKLKVTSLIELLALSLMALNLFMAQ KDRSGLLTRTFDNNYIVKYLGMNEYALYDGVKTAQNNAEMAKANASDLKSVQAYLQKHQV TPNASYTGVAKGKNVLIIHLESFQQFLIDYKWKGKEVTPNLNKLYHQSDTLSFDNFFNQV GQGKTSDAELMLENSLYGLSSGSAMSSYGTANTFEAAPAILGQDGYTTAVMHGGEGSFWN RNNAYKQFGYQYFMPLSYYVNKKSYYIGYGLKDKIFFSQSIKYIERLPQPFYLKMITVTN HYPYELDKKNQSISKTDTGDSTVDGYVQTAHYLDQAIGELMSYLKKTGLEKNTMIVLYGD HYGISGNHHKAMAQLLDKKGYNDFDNLQQQRVPLMIHMPGLKGGINHTYGGEIDVLPTIM NLLGYNDTNTIQFGHDLLATNREQLVVQRNGDFVTPKYSKVTGTYYYTKTGKKVKNPSKK VKEELASLSNQVTTQLSLSDRVIRGNLLRFYHPSWFKPVNAKDYNYQKKIALKNLYAEDK KKKSSLWYQNGKKTTQSDFTTDAPELKKSSN >gi|260196053|gb|ACQN01000014.1| GENE 7 12084 - 13391 1571 435 aa, chain + ## HITS:1 COG:BH3248 KEGG:ns NR:ns ## COG: BH3248 COG0773 # Protein_GI_number: 15615810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Bacillus halodurans # 8 435 4 431 433 464 52.0 1e-130 MLDKTKQYWFIGIKGTGMASLALIMHDLGFNVAGSDIDMETFTQKPLEDKGIVIKSFNRD NITPAQVIVKGNAFKEENPEVAAALEMKVPMHSYPDTVEEIIQQYTSIGISGAHGKTSTT ALLSHVLTEAAPTSYLIGDGEGRGVKDSRFFVYEADEYRRHFLAYHPDYQIMTNIDFDHP DYFKDINDTQSAFQSAADQTKKALFVWGDDPRLQKIETKIPKYTYGFKDSDDFQAYNVKK STDGTSFSVKAHGKEIGEFKTHLFGDHNIMNSLAVIGVALTEEVPMEDIQKGLLTYGGAK RRFSEKDFGDITVIDDYAHHPTEMKATIQAAKQKFPDKKLVVVFQPHTYSRTKEFASEFI EILRGVDKAYITPIFGSAREKSGDISSEDLTSQIPGSEVIDIANIADLTKNRNSVVVFMG AGDIEKYEDAFEKLI >gi|260196053|gb|ACQN01000014.1| GENE 8 13495 - 16152 2619 885 aa, chain + ## HITS:1 COG:SPy0185_2 KEGG:ns NR:ns ## COG: SPy0185_2 COG0749 # Protein_GI_number: 15674390 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Streptococcus pyogenes M1 GAS # 327 885 1 557 557 587 55.0 1e-167 MANKKLLLIDGNSVAFRAFYALYRQLDRFQNPEGLHTNAIYAFKNMLDVIVKQENPSHVL VAFDAGKVTFRTKLYSDYKGGRQKTPSELLEQIPYIKEMLKDLGIKSYELANYEADDIIG TYSKMGEDAGYQVAVVSGDKDLTQLASDLTTVYVTKSGVSELEAFTPEHMKEVNGVTPTE FIDMKALMGDNSDNYPGVTKVGPKTASNLIQQYGSVENIYKHIDEMKKSKLKENLINDKD KAFLAKTLATIDRTSPVELKLDDLKKQETNTVELRKFYEQMNFRRFLAELNSSDNEIGEA SDKKVDYIVLNEKNLDKLPKDGSEVSFYLGMFGENYHLADFVGFSLKMGDNIYVSNDVSL LTKQPLLSLLEDQAIAKNVFDLKRTMVGLYRLGIKSHNMNYDMLLASYLVNNENNSNDLG EICQLYNYYDLQPDIDIYGKGKKAAIPEETVFFNHLAGKVLAIEVLKPTLLKKLTEHEQD DLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFAQRLTELEADIYLEAGERFNINSP KQLGQILFEKLGLPPIKKTKTGYSTSVEVLEQLKEQSPIVQKVLDYRQIAKIQSTYVKGL LDVIQPDGRVHTRYQQTLTATGRLSSVDPNLQNIPVRLEEGKKIRKAFVPSNSDGYIFSC DYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPNEVTPNMRRHAKAVNFG IVYGISDYGLSKNLGISRKQAKEFIDNYFEQYPKIKDYMDKEINFARENGYVETIMHRRR YLPDIHAKNFNVRSFAERTAINSPIQGGAADIIKIAMINMQKKLDELHLKTKMLIQVHDE LIFDVPADELETIKKVVPEVMQNAVQLDVPLVADSNWGHDWYEAK >gi|260196053|gb|ACQN01000014.1| GENE 9 16165 - 16992 629 275 aa, chain + ## HITS:1 COG:lin1599 KEGG:ns NR:ns ## COG: lin1599 COG0266 # Protein_GI_number: 16800667 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Listeria innocua # 1 273 1 273 273 252 47.0 6e-67 MPEMPEVEIVRKTLNEIVLGKIIKEVKVWYPNIIIGDSESFSDQLKEKQIIKIDRYAKFL LFRLSDNLTIVSHLRMEGKYRLASPQDAKDKHDHVEFIFTDGTSLRYNDVRKFGRMQLIR TGTEKEKTGIKKLGPEALSDDFTLSYFKQALKNKKKNIKATLLDQDVVSGLGNIYVDETL WLSEIYPERPANSLADNEIKKLYLAINQVISQAIKERGTTVHTFLDAEGQTGGYQKYLKV YGRAGEKCFRCGNVLQKTKVAGRGTTFCPKCQEVK >gi|260196053|gb|ACQN01000014.1| GENE 10 16992 - 17606 528 204 aa, chain + ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 190 1 193 197 140 40.0 2e-33 MTFYLAVTGGIASGKSTADSYFKDQGLPIIDSDEIAHNLLEKDTEVTNRIAQSFGKECLL SNGGVNRKKLGKIVFNDSEKLALLNQITHPAILAEIEKKKAVIKSGICIVDVPLLFESNQ QKYYDASLLIYVPEKVQLERLMRRNKLSKEEAMSRIKSQMSTSKKLKLATYSVANTGTIE LLQDKLSKILQEVKEKEDAMSKLS >gi|260196053|gb|ACQN01000014.1| GENE 11 17584 - 18051 557 155 aa, chain + ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 152 1 152 153 182 58.0 2e-46 MQCPNCHKNASKVIDSRPTDEGRTIRRRRECENCGYRFTTFERVEQTPLLVIKNDGTREP FDREKILRGVAAAAQKRPVTSEQLDKLVDHVENEIRKQGVSEISSKEIGELVMNELVNVD DVAYIRFASIYRQFQDISGFMKTMKDIMDKHEHSN >gi|260196053|gb|ACQN01000014.1| GENE 12 18068 - 19411 1156 447 aa, chain + ## HITS:1 COG:BH3145 KEGG:ns NR:ns ## COG: BH3145 COG3611 # Protein_GI_number: 15615707 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Bacillus halodurans # 2 443 5 471 485 88 23.0 2e-17 MYKNADPRLTYFVLNKVDLARKQEQVLTRLYQPLIGPIALSLYLTLINDYQHVPIKSQGK KLYQLQEILDIKLEDIFNSLHKLEATGLVKTFHGEMLGVGDYLAFQLVDVPEASEFFKTL LLSSLLLEKVGTTSFQNLNKEFNPTLPGFIKEGKDVSADFFDVFHLSAEKAINPDEQVLN AANLADQKATNLVRAKMSPIDWNFVKDLFSKYGISADEVDSHAGQMAQLMHFYGLSEQDF VNQVATTIVAGQDQLNIKQMQYRLNELATQNQSQKQIAQAFKRGDVKNNSSVDLNQSERE LLEMAKSLTPLKFLETLKLQKGGFVTYNERNVIRRLQLNYNLPDAWVNILIKTCLDYDSV LSDNITGRIANSWLQHQVTTPEAALEFTREWQKRKVTKTRKKRVEQGTDWKKKLAQDKIN KEASVGSADEQDLSEIMKNLQKFDPKD >gi|260196053|gb|ACQN01000014.1| GENE 13 19415 - 20329 675 304 aa, chain + ## HITS:1 COG:SPy0340 KEGG:ns NR:ns ## COG: SPy0340 COG1484 # Protein_GI_number: 15674497 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Streptococcus pyogenes M1 GAS # 1 301 1 300 300 195 38.0 1e-49 MEKINDLLGSTFTQNSKDRKIDSKALINEALQDSEVQAFINQNHVPKEVVLSSLNNIFQF HQQKEAAKNGSNPIPGYLPKLILHGSTIDLAYAPTKEKSKDLIKQKANQHLELIDVPKRY RHVKSTDIIPNDDRREAITAISNFLMDIQNQDYSQGLYLQGDFGVGKTFLLAWLARALAE MGKKVIFLHTPSFFANLSTHIKEQNLDEEVARISKTDILILDDIGAESLSQWSRDDVLGV ILQYRMDNLLPTFFSSNLTFDDLEKHFEETRNNIEPIKAKRLMQRIKFLGKEVDVGGKNL RLDQ >gi|260196053|gb|ACQN01000014.1| GENE 14 20354 - 22309 2139 651 aa, chain + ## HITS:1 COG:L49741 KEGG:ns NR:ns ## COG: L49741 COG3590 # Protein_GI_number: 15673785 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Lactococcus lactis # 24 651 5 627 627 459 40.0 1e-129 MKNILQVRGGAGDLTKADVNVSPKDNLYLAVNSAWQKDAVIPADRTEIGVNTEIDMRIEK RMKDDLAALLAGKEDVNSVPNLAKAVDFYKLALNIDQRNAEKTAPIQADLHELLALKDFS DFNTLAASNLNQILNSAVILPFAFEVDADMKNTQKHALYFAGPGTFLPDTSSYQAPDAEK LLQILAKQTQHLLELAGVETAEAEVIIKSGLIFDQKLAKVVKSSEEWSDYPACYNPISLA EFLIKFKSFAIKTYLETLFDKLPERVIVMEPRYLDKIEALFNPDNFDQIKGWMLMKFINN SAKLLSQEMREAAFPFRQAVSGVAELPPVQRQAYYLTNDFFDEVLGVFYGQKYLGQAAKA DITQMIKQMIKVYESRIANNTWLSQATKDKAIVKLNALVLKIGYPEKLEAIYDQLKVEPT VSLYENQKVCSVIRAKYNLSKLFKPVNRNVWLMPGNMNNACYDPQRNDITFPAGILQAPF YDLKQSRAANYGGIGATIAHEISHAFDNNGAQFDENGNLNNWWTKQDFDEFEKRTQAAVD LYDGVQYGPSKLNGKQIVAENIADLGGLTCAIQANKLEGGNMKDLFENYARSWAQIQRPA AIKTEVSVDVHAPQPTRVNIPVQCQKEFYETYQVGPTDGMWLDPEKRVEIW >gi|260196053|gb|ACQN01000014.1| GENE 15 22599 - 24530 2601 643 aa, chain + ## HITS:1 COG:L0357 KEGG:ns NR:ns ## COG: L0357 COG0441 # Protein_GI_number: 15673893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Lactococcus lactis # 5 641 4 644 646 780 58.0 0 MSFSITLPDGSKKNFDQAVSVLDLAKGISTSLGKAAVAAKVDGEVKPVNFMLEKDSEVAI LTDKDEAGLAVLRDTVAFLLEAAAQAKYPELRLGEHEANEDGFFVDTDKEDQIKITELPE LEKAIVKLIKNGQAIEPVMVKKSELEAEFKNDPFKMELLKSEGDEVAAFKMGDFVDFGFK ALLPNSGKVKHFKLLSVAGAYWQGKSSNPMLQRLFGTAFFKETDLEADLKRRAEIKERDH RTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKELADGYQHVYTPVLMNLDA YKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPIRIAELGMM HRYEKSGALSGLQRVREMTLNDGHTFVALEQVQEEFAKILKLIMDVYKDFDITDYYFRLS YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKTALGND ETMSTIQLDFMLPERFDLSYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTWL APEQVEIIPVNLDAHGEYAKKVRDELLKHGFRAEVDFRNEKMGYKIRESQTQKVPYTLVL GDDEMNSNAVNVRPYGTEKQESMSLDKFIDELQADVDSYSREK >gi|260196053|gb|ACQN01000014.1| GENE 16 24759 - 25268 402 169 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 1 165 1 166 166 159 49 5e-38 LNESIRAREVRLIGEDGEQVGVVSKNEALNQAADADLDLVLISPNAKPPVARIMDYGKYR FEQQKKLKESRKKSKTVSVKEIRLSPTIEGNDFDTKLNHVRKFLSKEGAKVRVSIRFRGR AITHTELGLKVLEKMADATKDIANVTAKPKMEGRSMFLMLAPKSEKDKK >gi|260196053|gb|ACQN01000014.1| GENE 17 25295 - 25495 345 66 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526539|ref|ZP_03956588.1| 50S ribosomal protein L35 [Lactobacillus jensenii JV-V16] # 1 66 1 66 66 137 100 2e-31 MPKQKTHRASAKRFKRTGNGGLKRHHAFTGHRFHGKTKKQRRHLRKAAMVSRSDLKRIKQ MLSQMR >gi|260196053|gb|ACQN01000014.1| GENE 18 25539 - 25895 592 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526538|ref|ZP_03956587.1| ribosomal protein L20 [Lactobacillus jensenii JV-V16] # 1 118 1 118 118 232 100 4e-60 MPRVKGGTVTRKRRKKVLKLAKGYRGSKHLQFKAASTQLFVSYKYAFRDRRKRKSEFRKL WIARINAAARQNDLSYSKLMHGLKVAGVDINRKMLADIAYNDEKTFAELAATAKKALN >gi|260196053|gb|ACQN01000014.1| GENE 19 26129 - 26800 233 223 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P [Lactobacillus reuteri DSM 20016] # 12 222 34 241 477 94 30 3e-37 MVLSKKSESQVNNKTSVESMINKYIKKAHQALEIMATFDQERVNKICEAVAIAGEQNNYA LAKMAVEETGRGVVEDKAIKNMFATENIWNSLRHEKTVGVISEDKERELIKIAEPVGVIA GVTPVTNPTSTVLFKSLIALKTRNTIIFGFHPQAQNCCVKTAEIIRKAAVNAGAPEDCIQ WIEKPSIEATNTLMNHPDVQLILATGGPAMVKAAYSSGKPALE >gi|260196053|gb|ACQN01000014.1| GENE 20 26893 - 27294 285 133 aa, chain + ## HITS:1 COG:SA0143_1 KEGG:ns NR:ns ## COG: SA0143_1 COG1012 # Protein_GI_number: 15925852 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 1 132 256 387 458 134 50.0 6e-32 MVCASENSVVVDSSIYDQVKKEFAAWNCYFLKKNEIKPFTEKFIDPKRGTVAGPIAGKSA YQIAKLCGLEVPENTKVLIAEYKGVGKKYPLSAEKLSPVFTLYKAKDHEDALKICAELLN YGGRGHTAGIHTN >gi|260196053|gb|ACQN01000014.1| GENE 21 27309 - 28715 1567 468 aa, chain + ## HITS:1 COG:lin1675_2 KEGG:ns NR:ns ## COG: lin1675_2 COG1454 # Protein_GI_number: 16800743 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Listeria innocua # 62 468 1 410 411 391 47.0 1e-108 MKMSACRILVNTPAALGGVGDLYNNLLPSLTLGTGTYGANALSHNVSASDLLNIKTVAMR RDNMQWVKVPKKTYFEHNAANYLRHMPDVNRFFIVTDQTVANEFGNRITDILANRLGEKS YEIFQAVNPDPDSDVIFDGVHRMKIFNPDVIIALGGGSVMDAAKAMRLFYENPDMTFEDS YQKFLDIRKRTVRFPKDNKVKLVCIPTTSGSGSEVSPFAIIKDAKTGIKHPLCDYSLNPD VAIVDDQFVQNLPENLVAAAGFEALAHAIESYVSTMATDFTRGWSMEAINLIFENLEQSY KGDLVARNRMHNAATLAGMAYGNAFLGIGHSIAHCLSSHFNLPSGVSDILVMPEVIRFNA KRPNKLAMWPHYATYRADKDYVKIAQSLGIKGTNDAEFIDGLCQKIIDLAHSLDISLSLK DYGISKSESEQHLSEIAVEAYGDQNTVTNPSAMLIGEIKDLLLKIYQA >gi|260196053|gb|ACQN01000014.1| GENE 22 28803 - 29333 593 176 aa, chain + ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 153 25 175 194 148 49.0 6e-36 MIFRPIYTIDTIYHLDPTELKKMGIKAVFSDLDNTLLAWNIRDSSQEMAILNKKLAEAGI KLIVISNNNPERVSKAVSKFDVAFWANARKPLPFGILKALEHYNLSKENVIMVGDQLITD IQAGNLAGVKTVLVKPLVETDKWNTRINRFFEKIIFFFLNINKKIEFKESLKWMKN >gi|260196053|gb|ACQN01000014.1| GENE 23 29318 - 30427 1082 369 aa, chain + ## HITS:1 COG:SP1749 KEGG:ns NR:ns ## COG: SP1749 COG1161 # Protein_GI_number: 15901581 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 3 369 2 368 368 387 51.0 1e-107 MDEELRCIGCGAVLQSQDENEAGFLPASALNKALEGENQEVYCKRCFRLRHYSEIMPVEL NNDDFLRLLNSLGDKKALIVNVVDLFDFNNSLIPSLKRFVGNNDFILVGNKVDLFPLNSK ESKIKDWMRQEANRMGLYPKDIFLISAAKKRNLQDLIAYLDRASQNQDVYFVGTTNVGKS TLINSIIDLMGDVKDLITTSRFPGTTLDQIKIPLDSGHYLVDTPGIMTDKQLASYLNSKD LDLIAPKKPLKPATYQLNSGQTLFLGGLGRIDFVSGEKTSFTVYTARGLYVHRTKTENAD EFYEKHVGDLLTPPHGDENLPAMKGQTYHPTTKSDLLFGGIGFITVPAGVVVKTYLPGGI GQGIRRALI >gi|260196053|gb|ACQN01000014.1| GENE 24 30441 - 31070 765 209 aa, chain + ## HITS:1 COG:BS_yqeJ KEGG:ns NR:ns ## COG: BS_yqeJ COG1057 # Protein_GI_number: 16079618 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Bacillus subtilis # 22 207 2 187 189 174 43.0 1e-43 MDCVVANKPKVRAQEIKKVSGKQIGIMGGTFNPVHIAHLVAAEQVMTKLHLDEVWFIPDN IPPHKELALNIPAEDRANMLELATKNNPKFKVMLLELYRGGISYTIDTMHYLKKEAPENN YYLIMGSDQVNSFHTWKDADELARLATLVGIRRPGYTQEAHYPLIWVDAPDIRLSSTAIR HAVKTGTSIRYLVPDSVREYIEQRGLYRD >gi|260196053|gb|ACQN01000014.1| GENE 25 31138 - 31671 672 177 aa, chain + ## HITS:1 COG:SP1746 KEGG:ns NR:ns ## COG: SP1746 COG1713 # Protein_GI_number: 15901578 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pneumoniae TIGR4 # 1 171 22 190 197 163 48.0 2e-40 MDEARFRHCQGVSITARKLAKLNNYDEDKAALAGFIHDYAKQVANEEFIRVIKDKSNGFD QDLLNWNRAIWHGIVGTYFIKRDLGITDSEILTAIRRHTTGDVEMTTLDKIVFVADYIEP GRSFSGVDEAREVTFANLNDGVGYELAHTLQFLANNRQKIYPKTLAAYNVWGIKKEK >gi|260196053|gb|ACQN01000014.1| GENE 26 31674 - 32021 383 115 aa, chain + ## HITS:1 COG:BH1328 KEGG:ns NR:ns ## COG: BH1328 COG0799 # Protein_GI_number: 15613891 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Bacillus halodurans # 1 112 1 112 117 89 33.0 2e-18 MNSEKLLDITLDAISDRHGEATEAYDMRGISILADFYIVTSASSNRQLHALVNSILDKVR EYDYHDYRVEGTRDSNWLLVDLGDIVVNIFTEDARDFYGLESLWANGKKLDIPED >gi|260196053|gb|ACQN01000014.1| GENE 27 32024 - 33178 1252 384 aa, chain + ## HITS:1 COG:BS_ylbM KEGG:ns NR:ns ## COG: BS_ylbM COG1323 # Protein_GI_number: 16078570 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Bacillus subtilis # 1 381 1 403 415 213 33.0 5e-55 MSVVGIIAEYNPFHSGHEFLMNQARLKAGEDPIIVIMSGNYVQRGEMAITDKWTRAKYAL TSGADLVFQMPFATSVQAADIFAKGSMEILSKLGCEELVFGVEDANLNFAYLGEKIKQIP ESKMDFNDYTQTYSTQYNQMVAREVGREVNEPNIILALAYAVANADLAKKLKLSPITRIG ANHDDLLEREKVVQSASAIRNLLLEEPDLADLKQWLPKAEAEQLLAQSVYPNWNLLFPFL KYKIESASLAELQQIYQMSEGLEYKLKAEIHEARDFTEFLRHIKSKRYTYSRLRRLCLYT LLGVTNEDIANSQADVSSVLLGYSKRGRNYLKKIRKDVELPIISKVDHKNSQIGSLALDV RVDRLFEQIIGRDQNFGQKPIEVK >gi|260196053|gb|ACQN01000014.1| GENE 28 33178 - 33723 568 181 aa, chain + ## HITS:1 COG:L39365 KEGG:ns NR:ns ## COG: L39365 COG1399 # Protein_GI_number: 15673577 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Lactococcus lactis # 12 164 9 161 176 80 36.0 1e-15 MLTINFSQIKKSKEPLTEITTKLETRPEFFARAKELLLDAKNIQVKGQMFYQEPFVTGNF QVEADVVAPSSRSLAPVPMHLNFSFTENYLDREPTNEEKEEVDMIVPIDKDTIDLQTAIE DNLLLSLPTTILTKDEEENNEFPQGTGWEVVSEESLEKQNEEKINPAFAKLKDLFPDSDE K >gi|260196053|gb|ACQN01000014.1| GENE 29 33898 - 34620 922 240 aa, chain + ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 230 1 225 226 271 69.0 6e-73 MAKILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPDLNG LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVN IEKKVSSNAAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSR EQLLNKIWGPDSNIETNVVEVYVRYLRNKIDAPDRPSYIKTVRGTGYMVREDDAPVPEAN >gi|260196053|gb|ACQN01000014.1| GENE 30 34595 - 36163 1611 522 aa, chain + ## HITS:1 COG:L0130 KEGG:ns NR:ns ## COG: L0130 COG0642 # Protein_GI_number: 15673575 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 5 501 10 488 491 280 33.0 4e-75 MHQFQKQTKKKETKNTSLVKKWVSLVALTITVSFLVFSVIIYSIVSQQFLNQERQVAETV VENFEHRLSSINKELQISNVVPTLSPTTQRILNGGPTISAADNNTSSTENGFSDDILQNL TNQDISVVIFDKSGDVVFSNGKNQADFLSNITHKEEQIKLNLGKQSLTIYQPIRSANNRK ITGYIAVTDDMSNFNSMMDKVRAWMIGISIGATIIFILISYFIIRGIVWPLNAMSKVARQ IKKDPNSDVRIPDLKRDDELGELAQSFDQMLDRVQGYIQQQKQFVGDVSHELRTPVAVIE GHLSLLERWGKNDPQILDESIKASLQEAERMKHLIQEMLDLTRAEQIDIQYPNEVTNVSE VLTRVVSDLQLVHQDFTLRLNNDLNEDTMIQMYHSHFEQLLIILIDNAIKYSTDRNEVII SSSVEDGEVVVSVQDFGEGISESEKSKIFNRFYRVDKARTREKGGNGLGLSIAQKLTQSY HGKISVDSVLGNGSNFILRFPVLTKKEVKLLNKKKEKAQRGK >gi|260196053|gb|ACQN01000014.1| GENE 31 36292 - 37161 289 289 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 233 1 233 311 115 31 6e-25 MTYAIEVHNLSKAFNEQAVLSNINFKIKEGEIVALLGKNGAGKTTLIRLLNDLLSKDTGT VKIFGQSKPNRNLIGVMPQKSIILDRVKVKEAVNLARSFYKSPMPFDKLVELANIGALLD KYTDKLSGGQLKRVSFAIVMAGNPKLVFLDEPTAGMDVEARNEFWQKINGFKKLGTTFLI TSHYPEELEKVAGRYLIINNHRLVFDGSLEQMKKQNQTVKVSFVSQLEKVSFVNLPAVVD INENNNHYVLKVNGLNAFLPSFIKYLNQVENLEISQSNLENLMKKWMED >gi|260196053|gb|ACQN01000014.1| GENE 32 37164 - 37901 733 245 aa, chain + ## HITS:1 COG:BS_yvfS KEGG:ns NR:ns ## COG: BS_yvfS COG0842 # Protein_GI_number: 16080461 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Bacillus subtilis # 1 233 1 234 245 97 25.0 3e-20 MNNFAYQLKINLKRFLLRNPFFFIFIISLPAVFYLIYTKVAITDAPAGWNKRFLVSMIVY GILINSLSTLSRILSSDDKKGFKLFVKLSPTSLNSYYANIFLVFEFMNIIAVSAVALVGV FINKVNLSLENWLVLLVAVPVLCLPFALLGVLISFVGDENAVGALANLLMFTIAILSGLW WPLSMMPDYLQKIGKIMPGYPASQLSLDLLLKQNMSGNQLQTLFVWLIVLILILGLVVKN KGRKA >gi|260196053|gb|ACQN01000014.1| GENE 33 37971 - 39023 1011 350 aa, chain + ## HITS:1 COG:BS_yocF KEGG:ns NR:ns ## COG: BS_yocF COG4585 # Protein_GI_number: 16078979 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 56 348 71 366 370 118 29.0 2e-26 MPYYYLLFLFFAVFAALPIKNLFDWVCFLALIPFAKFYRDSYGEEIPNYDWEITAMIAIA ALWVINYQYYYNFIFAGFCIGFSEIKPHIFKNRVVIYLSSVTACAVYTVIKQGFDINLFF GLLFAYSCVFFAHSFAVSQRKRFVLKQDNERLSIIIKQSERDRIAGQLHDNLGQVFSTLA INADLAEKLVDKKPDLAKKQIQQIGENARDNLNLVREIVADLRKQKLVQVLAVESENLEN AKFDLTTENQAQAFTWPDNIQNELSFIIREAIANAIRYSHGNLVRITFNEDSNNYFVRIK DNGIGFKNKANTSREHFGISGMQTRTEKLKGSFAISDKNGVEISISIPKE >gi|260196053|gb|ACQN01000014.1| GENE 34 39026 - 39631 552 201 aa, chain + ## HITS:1 COG:BS_yocG KEGG:ns NR:ns ## COG: BS_yocG COG2197 # Protein_GI_number: 16078980 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus subtilis # 1 200 1 197 199 174 47.0 7e-44 MTRLFLAEDQELLNSALKMLLDLEDDFEVVGTSLTGEDVANKIITLKVEVALLDIEMPKE SGLEIAKELREQNYPGKIIILTTFARANYFKEALAQKVDGYLLKDSPSDSLVKAIRAILD GNTVFDPKLVSGVLNEVDNPLTNREMDILKMLEQVATTKELAQKLFLSEGTVRNYISSIL SKTGTSSRLEALNLARNKGWI >gi|260196053|gb|ACQN01000014.1| GENE 35 39666 - 40640 882 324 aa, chain - ## HITS:1 COG:SPy0351 KEGG:ns NR:ns ## COG: SPy0351 COG0706 # Protein_GI_number: 15674505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Streptococcus pyogenes M1 GAS # 1 321 1 306 307 157 33.0 4e-38 MKKNKKILLLVSLVAMLAVILTGCAAYKTGANAAPKGGFFGLIYQFIGIPIRNIMLATEN AIGGTNGAGWAIAIITAVIRFVLLPLMLSSSKKSTIQQEKVSRLQDQFKLIQDALKDRSL TPDKQMQISQLQQKVYRENNLSITGGIGCLPLIVQFPFMIGIYQAVAYSDALYKSSFFGV SLGKPSLLFAIVGALFYLAQSLLMLRGVSEQQRAAMQSTIFISPLMTLFISMSTPGALGL YFLVGGIIALIQQVIVTYIILPRAKAKIDAELKEKPMKVVVTKEIIDDIIGNDSDNSVNS SDSTSSTEEELRKRNAGKQKRENK >gi|260196053|gb|ACQN01000014.1| GENE 36 40697 - 40972 413 91 aa, chain - ## HITS:1 COG:PH0897 KEGG:ns NR:ns ## COG: PH0897 COG0068 # Protein_GI_number: 14590753 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Pyrococcus horikoshii # 1 78 1 78 773 65 41.0 3e-11 METREIHVYGLVQGVGFRWCTQILAKKFFLKGWVRNENDGSVTILVQGKDYILEKFIQEL PSAQGPTARIDKIEQKQLTNVAPLTRFTVKY >gi|260196053|gb|ACQN01000014.1| GENE 37 41058 - 41825 178 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 113 252 101 240 255 73 30 4e-12 MQKITSTTNQTIKNLAKLNKKKYREQEGFYLIEGFHLVDEAFKSKLNFKYLLATQAAFEK LSIQYHLDLTDKRLIQINERVAKHLSATTNSQDVFMVLKINQPKHFTFNFGKWILLDSLA DPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHIPIIKADLLKTIEQFK ENYIPVYASVLDDEAKELPDFEKTKELALIIGNEANGVSGDAVNLADEKLFIPIKGQAES LNAAIAAGIMIYHFA >gi|260196053|gb|ACQN01000014.1| GENE 38 41898 - 42248 509 116 aa, chain + ## HITS:1 COG:BH0508 KEGG:ns NR:ns ## COG: BH0508 COG1733 # Protein_GI_number: 15613071 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 21 114 7 101 102 83 42.0 9e-17 MSTASQEKDGCQGCHNKFENCEHFINAFAFIGKKWNGLIISSLCSFTPMRFKDLANAVHA CSDRVLVERLKELEELKIVKRSVSDSGIITYKLTKKGAELKPVFDQVHEWADRWEV >gi|260196053|gb|ACQN01000014.1| GENE 39 42547 - 43596 1186 349 aa, chain + ## HITS:1 COG:L0354 KEGG:ns NR:ns ## COG: L0354 COG0016 # Protein_GI_number: 15673911 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Lactococcus lactis # 1 344 1 344 346 433 58.0 1e-121 MDLFERLAKLRDEGLAQIQKAENEKKLNDVRVTLVGKKGELTEILHSMKEVAPENRREVG QRVNELRDLFNQKLDDAKKDLLKKLVAEKLKAEAVDVTLPGRKTRLGSKHVIRIIQDDLE RFFIGMGFQVVQGPEIETEHYNFEMLNLPKDHPARDMQATFFVDEGHLLRSQTSPVQART MEKHNFENGALKMISPGKVYRRDDDDATHSHQFAQMEGLVVDKNITMGDLKGTLEAVAKH VFGQDRETRLRPSYFPFTEPSVEMDVSCFNCDGKGCPVCKYTGWIEVLGAGMVHPNVIRN AGLDPEVYGGFAFGLGLDRFAILKYGVDDIRDFYTNDIRFLTQFRQEED >gi|260196053|gb|ACQN01000014.1| GENE 40 43597 - 46005 2856 802 aa, chain + ## HITS:1 COG:SPy0769_2 KEGG:ns NR:ns ## COG: SPy0769_2 COG0072 # Protein_GI_number: 15674815 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 149 802 4 657 657 461 40.0 1e-129 MLVSYKWLQDFLKLDIDPNELAEKITRTGIEIASVDHPMEGLKKIVVGHVLECEMHPDSD HLHITQVDVGEDEPIQVVCGAPNVAAGEYVIVALHGARIAGNEKIKRGKIRGVVSNGMLC GLQEIGFSDSVVPQEFADGIFVFPEAIKPGTDVYEALGMDDYILDFDITPNRADTLSMEG AAYEVGAIVDQKPNIEDVALKGDGSDWTNELSVSVDKKLAPKFLMRKVSNVKIAPSPLWL QTRLWNAGIRPINNVVDATNYVMLLTGQPMHAYDASAFSGKCEVRLAKKGEKLTLLNENE LELNSEDIVITDGTKPVALAGVMGGLNSEVTDSTTDVILESAVFDPALVRKAALRHDARS ESSARFEKGLNWDNTEKALNMAALLLRNHAEGTVNEGIIYAQNEEKPKCEITANFAYFNK ILGTELSNEEILTIFNRLNFVTKSAGDEVTVTVPNRRWDISIKADLVEEVGRIYGYDNIK STQPVLGQTHGGYNADEIKVRHLRHLVEAQGLVETINYSLTSEDLAYLFRDKALAPVKVE WPLNSARTTMRQNLMASLVETASYNFARKQNEVRIFEQGRVYDHENDEYNEHTHLAALYS GTVEEVNWQHIEEKVDFYYVKGQVETLFDAVIKSPAKIEYKAINLPGMHPTRTAGIYIND QYVGFVGQIAPLLNLFDKNLRGKELYGYELNLDLILPLMDGETKSMPAPKYPSVERDMSL LVAENVTSDEVANVIRENAGKYLVKLDVIDVYQGKHIEAGKKSLAYKLTFLNEKETLTDE VVTKAVNAVSEALTSQLEVEVR >gi|260196053|gb|ACQN01000014.1| GENE 41 46072 - 46548 880 158 aa, chain + ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 158 4 159 160 158 57.0 4e-39 MPQKTYPMTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAV EQRIAQVEQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGK ISNDSPIAQALLGKHKGDTVSISTPGGSFDVVINDVKA >gi|260196053|gb|ACQN01000014.1| GENE 42 46614 - 49172 1889 852 aa, chain - ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 16 850 12 872 883 204 24.0 6e-52 MKINYQDKHVRTILYLLSFFIPFAIFAGYFAMHGMRILTVDLGQQYIDLLAFYKDHFFNP AAYSYSFANGLGGSLIGTFFYYLASPFNMLLLFFSKTQLPIAIYWIISLKVGTIGLTSYY YFQKHYQKIYALAGSNAFALSGYVIAYNLNLMWLDSLILLPLLILQIHQVGKKNWLILVT FLLWVTDFYTGYMALVFGFFYFAIYLFNHPTNWQKKLLNYVIKSTTATLLAAFALIPTIY EIINNKNSSAVFNWGIQFTPYKLLGKFISGSYSFHEMQAGLPNVYLTILFFLISLTYFLS QEFSLKERLSYAILLLFLFISCWFNPLVLFWHLGQFPTWYPARFSFVISFLLIELALKVL SRQSKISIKQLILIVLISAGLFTWLLTKNRFDFLDHNKVLISLVFAVIAIIIAAALPLKN ILVQGLIWGLTIIATALNLNSSLNSISYQVNEDYSNFTENVASATNSIKSQDSSLYRLEK TFSRSDDDPFSDGYYGLSVFNSIANSKINSFISYQGLAHNSNAFINKFSTQVLDSLLGVK YTLQPYYGDDNVKNSQRMKYNNRLYRTDINSMTFGGDFKQLSYAINQTALPLAYISQRNW ATNYFENQPIKNQQSFYTAATGDKTNLFTAINLPTAQLENAKASGNSTYQKKVLTQVATI SYSFTPKTNNSYYLQLPASLTGKIVSFTINGESVDIDARYDQVKLLNIANKQKGKKLVLS FTLLKNKVNLANIIIWELNSKHLTTTLTKLKENQPIVKETKAGTIETSTFTTSGNKTLRT SIPYDNNWTIYDNGKKINYTKFTNTFLEIQLVNGKHQIKFVYVPHQFYLGLLLSVITGIC LLAYYFYHKRNQ >gi|260196053|gb|ACQN01000014.1| GENE 43 49385 - 51409 2020 674 aa, chain + ## HITS:1 COG:BS_pbpA KEGG:ns NR:ns ## COG: BS_pbpA COG0768 # Protein_GI_number: 16079555 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Bacillus subtilis # 2 668 36 687 716 374 36.0 1e-103 MLIGQLAYLQLIYGSRFHSEVQKSDDTVVTSAVPRGIMYDDKGRVLVGNKANNAITYTKG SSVTSKQIYNISTALSQYITISNETPTDLQLAAYYLGNSSNYAKEYAKLPKSQKYDSDGN ELSNSKVYSTLEKQVIKEKKHYTSRQKTAALIFNKISGAYSLSTIYIKNQNLTDKEVAWV GEHLSDLPGVGIGTDWERTYPNGSSIKTIIGSVSSEKAGLPSENLQYYLAQGYSRNDRVG TSYLEKEYEALLKGTKTESKLTTKSNGTVTQTKTVYKGQAGASLILTLDSKYQAKVQKKL KSVYSSALSAGAAHYSSGAFAIAMDPNTGAIKAVAGLDHDVKTNKVTDDALGVINQSFVM GSVVKGAQVAGGLINKVITPSSNTLPDTPIYLPGTPVKKSVYPVGTFSSLDAETALEVSS NIYMMQLTLRWLNAKYTPKTYIHMPTDAFDILRHNFAMFGLGQKTGIDLPGEISGIEGKT HNSSGQLLSGSVLDESYANYDAYTPIQLAQYISTIANGGYRMQPYLVQSVGQTNSSGTKV SINYSKTPNVQFRIPWTSSELNVIKTGMYRVVHGTNAWGTAHTLKDVKPSISGKTGTAQT FYYDASASKKKNSSSDPIELINATFVGFAPSSKPKLAVVVVFPGLDPNLEGTYTLQVAKE MVEDYFKLNKYAEN >gi|260196053|gb|ACQN01000014.1| GENE 44 51485 - 51634 266 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526513|ref|ZP_03956562.1| 50S ribosomal protein L33 [Lactobacillus jensenii JV-V16] # 1 49 1 49 49 107 100 3e-22 MADNIILECTECGERDYLTKKNKRKHPERLALKKYCPRERKATLHRETK >gi|260196053|gb|ACQN01000014.1| GENE 45 51688 - 52236 671 182 aa, chain + ## HITS:1 COG:lin1373 KEGG:ns NR:ns ## COG: lin1373 COG0212 # Protein_GI_number: 16800441 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Listeria innocua # 1 153 1 155 179 82 35.0 3e-16 MKKKELRQRQILRLKEFAKKDRKVEEDILLQNKFLANSLLEGVKTIGVTCPLDFEIDNQI IIEQARKKGIKTYLAKSYHDKSMDFVYFDDQTRLEKSDFGVWEVANPTEINNQLDLLLVP GLAFSKVSHDRLGFGGGYYDCFLAEHNCKTVSLVNSVMLFDTPAWPIEVTDKQVGELITL TK >gi|260196053|gb|ACQN01000014.1| GENE 46 52274 - 52963 899 229 aa, chain + ## HITS:1 COG:BH1421_1 KEGG:ns NR:ns ## COG: BH1421_1 COG0705 # Protein_GI_number: 15613984 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Bacillus halodurans # 5 180 179 349 349 127 40.0 2e-29 MNNPRIRKYYKTNAMTNTIFVVLVAMFALETFNGGSEDSAVLFKLGAQFNPAVIILGQWW RLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLAGVGGNLMTMAFGSDN AVSAGASTALFGLFGAMIALGIANRTHEGMAYLGRQSFVLAVINLLFDINVPQIDTWGHV GGLIAGFLLTVILGDQNLRGYKLPIKILAALALIVFILATLRMGFIISE >gi|260196053|gb|ACQN01000014.1| GENE 47 52963 - 53172 165 69 aa, chain + ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 66 1 66 67 70 59.0 6e-13 MKTLYDVQQLWKKFNILVYVGKRKWDIELMALELDNLHHAGVISQKDYLTAKLILRREHE IEEKNEKES >gi|260196053|gb|ACQN01000014.1| GENE 48 53217 - 53618 379 133 aa, chain + ## HITS:1 COG:SA1364 KEGG:ns NR:ns ## COG: SA1364 COG0607 # Protein_GI_number: 15927114 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Staphylococcus aureus N315 # 31 132 27 128 128 99 49.0 2e-21 MNTFLLVIDAILLVIILSFLCSWLWNKYQAKRVGGALSNEEFRAGMRKAQIIDVRESAPF KRKHIDGARNIPMTMFKYQHGEIRKDLPVYLYSDASSITLRAARILQKDGYKKIFWLKDG LENWDGRTKASKY >gi|260196053|gb|ACQN01000014.1| GENE 49 53708 - 53887 347 59 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1381 NR:ns ## KEGG: LGAS_1381 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 59 17 75 75 76 67.0 3e-13 MAKKFGAGFVTGMITTLGTIAAGVFTYKKKVLDPAEQEAKRIEQNRIRANRKSHSAHLG >gi|260196053|gb|ACQN01000014.1| GENE 50 53956 - 54876 1040 306 aa, chain + ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 2 285 3 288 314 245 44.0 7e-65 MQKIIVVVGPTAVGKTSLAIKLAQQVNGQIISGDSMQIYREVSIGTAKATEEEQAAAPHL LINQKSVFEEYSVKDFVADATKAIDKTIQIKKTPIICGGTGFYINALINKLQLGEPGEYE TSVEPKFEVFLAEHGPEKLWQLLQERDPQACEKIPVENTRRVLRALTVIDRTGEKFSQQQ VQIKPRYDALLIGLNSERQLVYDRINKRVDIMMTEGLLDEAKFIYENRAREYQILQAIGY KEFFPYFEGTSDLNTCVEKLKQASRKYAKRQLTYFRNKLTVNWYDSLNNPNYFEEILTKV EQWQNE >gi|260196053|gb|ACQN01000014.1| GENE 51 54869 - 56116 1275 415 aa, chain + ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 6 410 2 406 412 412 49.0 1e-115 MNNYPKELIQIVKEVNNLIAPKLAELDEQVVYNQAKVLETYKHASVAEADLKGTNGYGDD DTGRDKLEQIFAEVFQTEAALVRPQFVSGTHTLATAMKGNLQAGDTLTYLTGMPYDTLQT VIGLTPHKQGTLMQRGIKFSYVPLKNNQVDYQAAKEILLRDKPKMVAIQRSKGYSTRPSY NVEQIKEMIAFVKEVLPSAIVFIDNCYGEFSEKHEPTEYGADLMAGSLIKNGGGGIAKTG GYIVGKKQLVENATYELLAPGCEEEGATLTNMQDFLQGFFIAPNTVVNAIKGMVFSSALL EKMGLEVAPRWDAVRTDLIQNIIFHDPEKMVKFAKELQKNSPVDSFVDPVPYNMPGYEDK VVMAAGTFVSGSTIEFSADGPIREPYALYMQGGLTYAHVKIAVMNAVNELFFKKV >gi|260196053|gb|ACQN01000014.1| GENE 52 56352 - 57707 1527 451 aa, chain + ## HITS:1 COG:BS_glnA KEGG:ns NR:ns ## COG: BS_glnA COG0174 # Protein_GI_number: 16078809 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Bacillus subtilis # 11 450 4 442 444 540 56.0 1e-153 MLTGGNMKKVYTEEEIRKIVRDQNVRFLRLCFTDINGTLKNVEVPLSQLDKVLANEIRFD GSSIDGYVRIEESDMVLYPDFSTWAVLPWGDNEGGKIGRLICSVHNTDGTPFAGDPRNNL KRVVAEMKDMGYSNFEIGFEAEFFLFKEDSEGNWTTKPTDQSSYFDMASEDEGAKCRRDI VETLEKIGFEVEAAHHEVGAGQQEIDFRFDDAVATADKVLTFKMVVKQIAKKHGLHATFM PKPVEGLPGSGMHTNMSLFKDGKNVFYDKDGEYKLSKTALYFLNGILSHARALTCVGNPT VNSYKRLIPGFEAPVYISWANKNRSPLVRIPDAEEIGTRLEMRSADPTANPYLLLAACLK AGLEGIKEAKMPMAPITSNVFEMSAEEKKERGIIALPSTLHNATKYFKQDKLIQDALGEH LTQSFIESKELEWAQYTQSVSDWERNRYMNY >gi|260196053|gb|ACQN01000014.1| GENE 53 57763 - 58500 483 245 aa, chain - ## HITS:1 COG:CT751 KEGG:ns NR:ns ## COG: CT751 COG0775 # Protein_GI_number: 15605484 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Chlamydia trachomatis # 14 214 9 216 289 63 27.0 4e-10 MNFDSNPNAVLNPNHENLGCDFADKLVYPFVTDENFQAFLADKDYKIAANFETFACNFSV YQVQYHNQTLSLVRPPLGASAAVQLLDWLIAYGVKEVLAIGSCGALTSGNEGDFFLPTKA LRDEGTSFHYLAPSRYINLVSPLVTQVKEQLEKRSLPYTEVTTWTTDGFFRETKAKVEQH LAEGISVVEMECAAMAACCQLRQVQFAQILYSADSLANFEHDARNWGQTRQKDVVGLACD ILTAI >gi|260196053|gb|ACQN01000014.1| GENE 54 58710 - 59792 1432 360 aa, chain + ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 3 355 2 347 350 260 45.0 2e-69 MKKTQIKAVVASGLMGVILLTLSGCRAKRSLSQNNAKNKHSIALITDISGVDDHSFTEAA WLGFKAFGKEHKLSQGMGGYQYFQSNSEGDFVPNFNQAASAGFETLYGVGYALKEAVATV AQKYPEKNFVIMDDVIEGRKNVVSATFKSNEASYLAGVAAAYTTKTNTVGFIGGAKSTVL DLFEAGFKQGVRDTAKKLGRNITILDQYVGDFTSTDKAKAIAQSMYAKKADIIYQAAATA GNGVFQEAKNLNKTRSEKNKVWVIGVDSDQSAQGEYTNSSGKKDNCTLTSVLKGLGYAVK DIADKAYIGKFPDGQHLVYGLEHNGVSITKGNLSTNAWKASQTARSQIIAGKITVEKTPK >gi|260196053|gb|ACQN01000014.1| GENE 55 60142 - 61320 1118 392 aa, chain + ## HITS:1 COG:L157472 KEGG:ns NR:ns ## COG: L157472 COG0477 # Protein_GI_number: 15672136 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 7 384 3 387 393 109 28.0 9e-24 MDKDKGKTVYTKDVFLVMAASFFFMFSVMFITPLINGYAISLGASSSFAGFVVGIMSVAS LFLRPIAGNITDIFSKYRLSLIGGILIAIGIIGYVITPNSELLLLFRLINGTGFVLCTVC MTTWLGALVPRSHVGQAMGFYGLMNALDMAIAPAIAIDVYHTIGYRNSFILAAVASILMI IVIQFVENHAMPKVRKNKLKKKFKLVQKNAFPVTILTALFAIPYFITQADIVIYAEQKHL DIHVGMYFVIYAIVLLVLRIVLKNFFDTVRFGVWLYVAAASMFFYLFILAIMTNDLMMGL AAIGMTVGYGIIYSVLQSTALLLAPLEEQGLASSTFYMGIDLGMSFGPIIAGFIDTYLPI QYFYLVQLILVPLVLIVYFVYRKRLNGAIDQH >gi|260196053|gb|ACQN01000014.1| GENE 56 61368 - 61931 304 187 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256850870|ref|ZP_05556259.1| ## NR: gi|256850870|ref|ZP_05556259.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 187 1 187 187 297 100.0 2e-79 MGACIIKLGKVISKDVDKMLFQFLYIIPCILIVSAVLTRTFLATNTNLKVKDLLPGIKVS ILFGLFNLILVIAVKVLTSLTYTSLLIIDGVVSLIAMTLILIFVIKQHRNYAGIMFFSIG LQLIAWGNLASEDALLLLIPYLAILGFDLIFALFYGFHKEGTWFWKCSLETKNAFFKQIS PLIPFLY >gi|260196053|gb|ACQN01000014.1| GENE 57 62222 - 64600 3161 792 aa, chain - ## HITS:1 COG:no KEGG:LBA1373 NR:ns ## KEGG: LBA1373 # Name: pepX # Def: x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) # Organism: L.acidophilus # Pathway: not_defined # 1 792 1 793 793 1211 73.0 0 MKYNQYALVKTDFDQKVKELTEIKFLPSDYVDYSFVDLFKYLFKQAIVEAKTDASKEAKL AEFAVNDKTSLADFLKNNPSQITADEFYCAALQLLGYHVVYDYAFDKPTSLMKKNALPIF GDITNKNDLISAFYLLLNTRAKNGQTYLDVIAGRGYFTQFYGQNKFMFFNGKSLPVFDTS KVIREVVYVESDLDTDQDGESDLLQVTIFRVPESNAGLKVPALYTADPYFGGIIDNVKRN HNVDENLSDASSWSNPQYKAMPTVPAKKPSGDTSQASEEAVHKAAYTLNEYMLARGLANV YAGAIGTRGSDGLRITGAPEETESAKEIIEWLHGDRIAYTDRSRQTEIKADWCNGNVGMT GRSYLGTLQIAIATTGVAGLKTVVSEAAISSWYDYYREHGLVVAPEACQGEDLDLLAETC QSNLWDAGSRLKVQAKYDQMQKDLLAKSDRTTGQYSDFWEARNYRHHTDGIKCSFISVHG LNDWNVKPKNVYKLWQKVSKLPIASHLFLHQGPHYNMNNLVSIDFTDLMNLWFVHELLNI ENGALTQWPKVMIQDNLEADTWHEEENWTDDGNETVYFLNDDMTLNKNLPGHTKKSFTDL GGKEFKAAKISESAWEYQFICGEEKWTKASLRFTSDEYAHPITINGRPRVRIRVSASLAK GQLSCALVELGKRKRLTATPKFIMPGGQELGYRFGVDTLQEFMPDKETKAKLICKGHMNL QNYQDMKHPSQIEANQMVYLDFLLQPTYYKMPRGSRLALIVYSTDQAMTKRPLEEETYTI DLAHSELSFWQK >gi|260196053|gb|ACQN01000014.1| GENE 58 64612 - 64968 313 118 aa, chain - ## HITS:1 COG:lin2520 KEGG:ns NR:ns ## COG: lin2520 COG1393 # Protein_GI_number: 16801582 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 116 2 116 117 110 50.0 9e-25 MKFYGYRRCSTSNKAQKYLDEHNVDYEFVDITQNPPTEAEFQTWLSKYQDRGLRYFFNTS GQHYRQLHLKDKLDSMTLEEASKLLASDGKLIKRPLITDGENLSCGFKEDVYQKLWLK >gi|260196053|gb|ACQN01000014.1| GENE 59 65348 - 66775 1339 475 aa, chain - ## HITS:1 COG:no KEGG:LSA1108 NR:ns ## KEGG: LSA1108 # Name: not_defined # Def: putative chromosome segregation ATPase # Organism: L.sakei # Pathway: not_defined # 36 474 3 451 453 343 52.0 8e-93 MALFKKNKKQNIDNSKDSSVNSTEKSSSKIQTKSSIFKLFHIKDLKKEIVDLTKENQLLK EKADIRLSIKQMQPEQLDNLIKDKNEELNKLDTIIIQKKDKIKNHDKKIARLTSRLKELN AKIIDVSDEIKYESYGLYKPKYNFANSSTYKGKLSEIRANQKLMIKNEVAAEIIHQMTLN DSVSQGKKLQKKNIKQLLRSFTGECEAAINKVTKSNFTTIEKRINRSFEQLNKLNEENSI RITAEYLDSKIDEARLALEYALKKEEEKEILREQRQREQEERQLQRELENERKKYEKDES HFQKAERLVEEKIKQTTNESELISLKNELQQLQAKLATIQEKKEKLENRAANPTAGYVYI ISNVGSFGKDIYKIGVTRRLDPMDRINELGSASVPFKFDVHALIFSDQAYQLEAELHNYF DKQRINKVNRRKEYFNITINEIKKVLKEHKDLTFDFHEVPEASEYRDSLLIEKNN >gi|260196053|gb|ACQN01000014.1| GENE 60 67048 - 68010 1143 320 aa, chain + ## HITS:1 COG:BH3916 KEGG:ns NR:ns ## COG: BH3916 COG1482 # Protein_GI_number: 15616478 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Bacillus halodurans # 1 317 2 315 315 314 49.0 1e-85 MEAIFLEPYFRTKLWGGRKLETLFNYQIPDGKVGEAWIISGYRDDASHVINGKFKGMSLR DLYQKHPELFANPEEKEFPLLVKYLDANDNLSVQVHPDDEYAAIHENDSGKTESWYVLQA DPGSYLIYGHHAKSRQELADMIHEGHWDDLLRKVPVKKGDFFYVPAGTIHALTKGIVVIE TQQSSDVTYRLYDYDRVDQKTGQKRELHTQKSIDVTTVPHKDPKLDIKKEKSGDAIITTL LNKPVSPHFYLAKIDLDGKVKFTMNWPYQLFSVISGSGKLCLPDKEYELKLGDNFILPTG SYDFTFSGKLSMITSAPIKK >gi|260196053|gb|ACQN01000014.1| GENE 61 68024 - 68416 336 130 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00750 NR:ns ## KEGG: LCRIS_00750 # Name: not_defined # Def: integral membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 129 1 129 129 174 64.0 9e-43 MIYVACGLIMMIVGLLWFLVPAKRPDRLYGYLSYLAQTNKDSFQFAQKMGARYNFLVGLV QFLLGLAIHFLGGDKYFLVWLLTFVIFIIIPFALTEKSLQKFLQKRHELPHDYVKPDEVK RQKVKGFRDL >gi|260196053|gb|ACQN01000014.1| GENE 62 68416 - 69138 944 240 aa, chain + ## HITS:1 COG:lin1542 KEGG:ns NR:ns ## COG: lin1542 COG0745 # Protein_GI_number: 16800610 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 237 1 228 228 229 51.0 3e-60 MELNILMVEDDSSVAEMMELFFKKEQWNVDIARDGLEAVDKFKERPDYYDMITLDLNLPK KDGIQVAKEVRAISESVPIIMLTARDSESDQVLGLEIGADNYVTKPFSPIALIARIKALH RRAALENNDEDRKAKGDFDIVTNTLKISKIRREVYFLDKQIDGLTPKEFDLLYTMAQKPK QVFSRDKLLELVWGYEYYGEERTVDAHIKKLRQKLEEVGPQIIQTVWGVGYKFDDSQVNK >gi|260196053|gb|ACQN01000014.1| GENE 63 69156 - 70610 1547 484 aa, chain + ## HITS:1 COG:BS_yclK KEGG:ns NR:ns ## COG: BS_yclK COG0642 # Protein_GI_number: 16077444 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 470 11 464 473 285 35.0 1e-76 MLAFLAIILTSTAIVGFSVINFASNQAYQNTYQRLEGYASSLGELATEQGPDGLNNSSSN DLIDSHFLTKLQIVMQSDDLQIRVFNGKNKQLYPKMGPKVKLPKNIWNTLKSGNEVRIKN DHDQKETYFSSKDAYTSVIIPWFNGSKMVGAVWIGARVKNVEQPVNLAKRNLISAFVVTL IVSLILSYLISYYSLVKIKRLSKATKKVAAGDLNVQINHQDHDEIDDLASDFNSMVKALK KSAEAVKAQERRRDQFMADAAHEMRTPLTTINGILEGLEYDAIPEDSKPKSYQLMHRETN RLIRLVNENLDYEKIRNNQISLIKTNFDAAVPLNDLKTQLKTNAEKENDVIKLEIPEKLP VYADHDRFTHIMVNLVQNAIKFTQNGVITVSAKRLKHGTEIFVNDTGIGMSEDQTKYIFE RFYKADPSRAKLGGKGESGLGLAIVLSLIKQHGGKISVDSTPGVGSTFSVTFFDKGFEEF SKED >gi|260196053|gb|ACQN01000014.1| GENE 64 71112 - 79937 12577 2941 aa, chain + ## HITS:1 COG:no KEGG:MW1324 NR:ns ## KEGG: MW1324 # Name: ebh # Def: hypothetical protein # Organism: S.aureus_MW2 # Pathway: not_defined # 1102 2932 4854 6642 9904 266 25.0 7e-69 MLSKKNRKQYDLKHANGRQHFSLRKTTLGLASVLLSTTLYLGTNTAITHAAETNGQSSTE SSTSSSATSSQADSTASSSTSSQESSSSSTSNQTLVSPAKTQVADANNLTDSEKAAVISA IKAVNSDVKSVIVDNDGTAHVTLSDGQTVKTLNSSETIEVVSSSSTSQNATSSANNESSN SSTTNKSTNELTSENVAQEDRASNDAVPATNSNTTNQTNIDINNVDAKKFNWYTTTDKTG IVITKYMGNDSTVVIPNAYDFKVAGKLNAATRVSITWDAIRQIANNHNTHTIVFSRNTDG SSLGKIALTIGDYKKLSADTVAKELTYDTSKGIWVGAFSPYSVVKKSNGQIAIQMDTSKT NTWVTAIDASSLDTTGLTDTTFMFSGLTNLKTLNVSTWNTSQVKDMTAMFYGNESLTNLD VSSWNTGNVTKMAGMFQNDFALKSLDVSGWNTSNVTSIQNMFRGTLSLSGLDVSKWNTSN VTDMSGTFWDAPGIYHLVDTGRTGSQTSKNLMYTTGDNFKNWNVSKVTNFQYMFGLSNSS PFVQQNTGNKQVLTYMDLTNWQLANGVDRSYMFQYDGNTGYNSTLGLVLKTSANSLLGMD YASMNRSNRIYYSVVKDSKSYDNEASFTKYVDYTPNVAYGGGGNLVNNITKMLQTVTGYS NAIVNNELDPKDGTTSNSLVKAGLTQDSNYTSDEDYIQQMLMADKEVITNVDFSKLKAAV DDQEATHESDAYKKASAEKQKAYDDAVEAGKSVLSNDLAYQTDVDDATAKIINTKALLSQ NVDKSALQKAVDTYPGLTKTAYDSSSKDVQAVFDKALQNGKDILADPNATQQQVDDAKGA LDNAALNMPSDALITNKDAGSAEGVYGSKQSNLSDNDYYVVSIPVNIVTADGKPYTFSSS DTTGFAVRGTTKLGSGTVIAGKSLSGVTIPSSGLKFNFFAYTAKGTNDQAYALQNDNVTV NNDSTGTSGFLAVTSFSTQYGNTKYVTITVYKRPNAVSTDIQKDTNISDAAAFAKKYVSN YDEVSSSVTKWSWYNSAPSTGTVGKQQGNLVATVNGSANSWTTGTSDISVPVTLNVITIS KDALQKAVDAQPTTQGTAAYYNADSTKQNAYDEAITAGKAVLADPNATQQQVDDATKAIE TAKGNLDGKETNKADLQTSIANANTAKSNGTYDQSSSDKKSALDQALADAETVNNKQNAT QSEVDQAKAALDQAIANLDGLTNAKTNANTAIDNMQNLNDAQKTAAKNAVSVAQTVADVT TAQNNAQTTDNNMKSLSDDDNLNVDTTKDPYLNADSDLKTAYDNAKKAADAILVKSTGQS VGASEDPKHVQDIKDALDNAASALNGAKKLSDAKNNAATDLSGLTKLNDAQRKTAQDAVD NAKTVADVTAAVNAAKNTNTNMGDLADDKNYANADSIKQSSNYKNADSDKQKAYNDAVQA AQDLLDKSKGTSTGNVTTDPDAVKTAKQKVDDAYAALNGDNNLTAAKNNAKAAIGDLQNI NNAQKASAISAVENAQSIDDVTIAETNAKSTDDNMKSLHDDTNLNLDTTADPYLNADQTL KDAYDAAKKAADDVLAKSTGESVGASADSAHVATLKKNLDDAASALNGTTKLSEAKTNAA TDLSGLTNLNNAQMQTAKKAVANAKTVADVTAAVNAAKNTNTNMGTLAADENYTKADQIK ASLKYTNADEDKQKAYTDALDKVKTLLDKENGSSTGVVTTDAQAVQEAQTELDNAAKALN GQTKFDADKQKALDDFDANYPNLNNAQKATAQKRISDATSPAELTTAQSTNSDLNDKMGQ LKTVAATVSDTKATDNYNYADPALKSVYDTTSDKVSATVAPTGDDLNSDQVTALINQEAT DKAALNGEERLKAKAALQTAHDTGLAGKTTDPKYYNATQTPKANYDKALTDAESTLASEN ATLADYQAAKKAIDDAYGKLDGQATNKQELQSRVSDADNVRQSDDYKNASDDARKTYEDA IKAGQDVLNNANATQVEVNTARDNIDKAKQALTTSANAAQSKVNSNVKATPVGDKTNLTS EEQDSIKKAVEDANKDNDVKSVTVDPKSGEVTVEFNDGSKATIPASKTTTDTNKTRLKND LDDSKTDATKAIHDKASTATKEAYDKAVSAGQTVFDNDKASQKAIDDAADAIENAKKAME DSANAAQSKVNTNIDKTAVGNKDALTSDEQAAVKKAVEKGNPDTTVSVDDKGTATVTFND GSNATIAPEYTLKGTDKSSLVKELNNESAVKNTQTVTLQDSEDKTPIQIYQRASDEARKV YDDAIAKGKEVNQNTTATQEQIDAATKAIQDAVKGLVLSSTNARLNFDFSFDKTPVVDPS NVSEAEKQAILDKIAAKNDNIDKSKSTVNADGSATIVLIDGSSVTLTPDQTIKDVNKDEL RQDIATADKLQADTTNYQKASDEARSNFEKALADAKEKEAGKFSQADVDTSDANLKKAIS ALQTSINSASANNPSVKTPVGRGRDINDDEKNEIEKAVNDANPGNKGVEVNSDGSATVTL ANGGKVTIPASATTQDTNKTVLKTALDNGNAAIKGSDFTNASTTAQEELKKAVQDGQSVF DNAGSSQKQIDDAASAINTALDKVTKSINAAKGKVITDITKTPVGDKTNLTDDEKSQVQS NVKSAIDAKNPGENVTVDVNNDGSATVTFKDGSKATVSASETVTDTDKSKLKSAIDEAPT VEGGSDFTNASTETQNNYKQAVEAGRKVFDNPTSTQKAIDDATEAINNAKAALADSAKSA ADKLDVTVEKTQVGNKSALTNTEKQSVKDNVTDAIKAKTPDAEFTVSVDDTGNATVTFKD GSKGVIGSDKTVTDVDKSGLQNDVNEKPSVEKTSAYYNASDDAQKAYNDAIADGQAVLDN PTATKDEVDAARANIANAKQALTGQKTDKTDLESSIDLANGFKDAGDTYNNASDERHLIR H >gi|260196053|gb|ACQN01000014.1| GENE 65 80276 - 82070 2239 598 aa, chain + ## HITS:1 COG:no KEGG:Apre_1411 NR:ns ## KEGG: Apre_1411 # Name: not_defined # Def: sugar-binding domain protein # Organism: A.prevotii # Pathway: not_defined # 1 510 1551 2067 2126 156 32.0 2e-36 MQTQKDLADSAKDTSSYFNASDDKKTAFDKALADAEAILTGNKKDTASQTDVDNAKSALE QAISNLDGKATNKKPLEESIALAKDLQNTDVYNNASDAQREALSEALSEAEGQDADPSAT QTNVDAAKAKLDQAFEAFSGKTDASNVKMPAKTPVPAAHKTALIDDEISAVKSAITSANS NVKIVDVDTEGNATILFNDGSKASLDASDTVTDVDKTALQTSDEAAQGLKNSSSYFNASA DKKQAFNDALAKADSILNGQEKDTATQAEIDDATQKLNDAARALDGKATDKSELEGSITV ADAIKDLDTYQMASDKQKSDLETALKNAKDIDADENASQESVDNAKKALDAALDAINNSQ ARDTKAPETKTEIHNPDSFSKDEQQAIKAQVQKDNPSATDINVDDQGNATVTYGDGSHTV IKGEENVKDTAMVDPLTNTGDADAELNSFSKTPVQDPDKLTDNEKQQVVSNIKNANSDKH IASVDVKDNGRTIITFEDGTQKELDRSETITYPDHTSGEALTFDDAQADQSLNNFDKVPV NDPDNLTDSEKTQVAENIKKSNSDKHIANVEVKDNGRTIVTFEDGTQKELDRSETITY Prediction of potential genes in microbial genomes Time: Wed May 25 13:52:07 2011 Seq name: gi|260196052|gb|ACQN01000015.1| Lactobacillus jensenii 115-3-CHN cont1.15, whole genome shotgun sequence Length of sequence - 5605 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1202 1428 ## Apre_1411 sugar-binding domain protein + Term 1251 - 1297 11.5 2 2 Op 1 . + CDS 1633 - 2052 263 ## gi|282933650|ref|ZP_06339013.1| surface anchor protein 3 2 Op 2 . + CDS 2095 - 2631 144 ## gi|256850880|ref|ZP_05556269.1| surface anchor protein + Term 2754 - 2805 0.2 + Prom 3003 - 3062 4.8 4 3 Tu 1 . + CDS 3123 - 5604 2964 ## MW1324 hypothetical protein Predicted protein(s) >gi|260196052|gb|ACQN01000015.1| GENE 1 3 - 1202 1428 399 aa, chain + ## HITS:1 COG:no KEGG:Apre_1411 NR:ns ## KEGG: Apre_1411 # Name: not_defined # Def: sugar-binding domain protein # Organism: A.prevotii # Pathway: not_defined # 2 335 1334 1644 2126 125 35.0 2e-27 SVSDPDNLTDSEKNQVAENIRKANSDKHISDVEVKDNGQTIVTFEDGTQKELDRSETITY PDHTSGEALTFDDAQADQSLNAFDKVKVQDPDKLTDSEKNQVAENIKNANSDKHIADVEV KDNGRTIVTFEDGTQKELDRSETITYPDHTSGEALRFDDTQAEQSLNVFDKVEVSDPDKL TDCEKNQVAENIKKSNSDKHISDVEVKDNGRTIITFEDGTQKELIPAQTIVEKPTETPVT SASVNKDNLKKEMAKKDQIHTSVAYTNGSAVNKKAYDETLAKAEAVLADENASQEDVDAA LAGLISASQKLDGKESVPTSTEKDDTSNETSKSNNLSKLSVTTTSKVTSSKKALGKKLGT NVDKLPQTGSRESEVSVIGLGLLTLALAVLGFKKKKDEQ >gi|260196052|gb|ACQN01000015.1| GENE 2 1633 - 2052 263 139 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282933650|ref|ZP_06339013.1| ## NR: gi|282933650|ref|ZP_06339013.1| surface anchor protein [Lactobacillus jensenii 208-1] # 1 139 1 139 139 181 100.0 2e-44 MANYLKETYKFYNAEDAKQETLLNLLTKAEAILTGSEKDTTSQAGIDEVTSQLELATRSL DRTITNKKTLEDNILIAEEAQDLDKYLNASEQIKNNFDKALKDAVVQRDNSDASQVNVDQ VSQALNQAIESLDGQATDK >gi|260196052|gb|ACQN01000015.1| GENE 3 2095 - 2631 144 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850880|ref|ZP_05556269.1| ## NR: gi|256850880|ref|ZP_05556269.1| surface anchor protein [Lactobacillus jensenii 27-2-CHN] # 1 178 1 178 178 277 100.0 2e-73 MGDVYDAASESERNQLNEALQHATQTLDESTSQAEVNQSEKELETAFWTFGENNYGSASN SEPKITDSKAETVKQDEKKIIPESELTQSISQLSKVKEISKPKVEKEALNDKMKIQKKQV ISEGKVNSKLHLTFKFSRIADYAYSNGRLKENNKTKRQACYCLSFYFGTLLNGRFIKK >gi|260196052|gb|ACQN01000015.1| GENE 4 3123 - 5604 2964 827 aa, chain + ## HITS:1 COG:no KEGG:MW1324 NR:ns ## KEGG: MW1324 # Name: ebh # Def: hypothetical protein # Organism: S.aureus_MW2 # Pathway: not_defined # 642 827 5859 6037 9904 88 39.0 1e-15 MGLASVLLSTTLYLGGNSGQLVHAAEDTNSTTVSSNSDAISTEEAKTTSVDKSALQNAYD NALNVQKSDVKYTNETDSTKKSAYDSAVANAKSVLDNASATSEDVTNAVNELNTAYNSLT GVANTTTTANDTTKTGAGLYSDEDKAKEQASNLTTESSTISRKLSTDFLKKYNVTNGDRY QVDPKDSGVFSSGNIDKWHAAVNTNNKYYNASATGNITITQADYNQNDNTITWTVTFNPN NGVSYSGSGSPAGTGAGGSGSGSFSTATSVYAISISKDLAVQSIKYGWNTLTDATENYNK SQASQSAVAITSSETNNAANEMTVTSGETTAYNSFKKALVSGPLFNYISNGDIGTNITFD PYQNGKTANSKKNSVGFTVQITTSVDTNNLGAFTGLVAGESYITPYLYSQMGDNAFKTPR VLGVYRAANINKGTEGITSEAIPVKVTYNGSETVPSDVTSITYTINKNADNLKKVNASKY ANATNDSIQVTTNDWNKGYYDTESVSYPYYYDTNTLKDDLLNSNALSLSNISVNGSSSKI YNTSTSIQNGALVINITAWDQPATGKEITVEKGTTLTPDLVAEKSISNYKQLKAEGYTFS FNNDVDTSKEGTGNYGLLIKYPDYTEANKHNSVQSITVHVTDSNLDNAKKAANDAIDKLN NLNDAQKAIAKAAVKAATTVDAVTAAQTNATTTDTNMGNLSNDDNYKSAESIKQGSNYKN ADTDLKKAYDDAVNEAKALLDKSTGTSTGDVSKDPVAVEAAKKKVDEALAALNGDSNLAK AKEEAKKAINQMGDLSDADKEAAKANVDKATEISNVNTAKSDAQDLN Prediction of potential genes in microbial genomes Time: Wed May 25 13:52:35 2011 Seq name: gi|260196051|gb|ACQN01000016.1| Lactobacillus jensenii 115-3-CHN cont1.16, whole genome shotgun sequence Length of sequence - 583 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 581 761 ## NWMN_1345 hypothetical protein Predicted protein(s) >gi|260196051|gb|ACQN01000016.1| GENE 1 2 - 581 761 193 aa, chain + ## HITS:1 COG:no KEGG:NWMN_1345 NR:ns ## KEGG: NWMN_1345 # Name: ebh1 # Def: hypothetical protein # Organism: S.aureus_Newman # Pathway: not_defined # 1 191 5878 6073 7031 83 38.0 4e-15 DAKKTAKEAINKLTNLNKAQKEAAIAQVNAAETVAEIQPIVETATALDGKMGDLKKAIEA ADAKKSITAYTQASDTKDFDDALTAANTLNSDKGDNEDAAAVQAKIDALTNAKLDGDKQL QDAKDAAIAKINALENLNKAQKEAAIAQVNAAETVAEIQPIVDTATTLDGKMSDLKKAIE AADAKKSTTAYTQ Prediction of potential genes in microbial genomes Time: Wed May 25 13:53:09 2011 Seq name: gi|260196050|gb|ACQN01000017.1| Lactobacillus jensenii 115-3-CHN cont1.17, whole genome shotgun sequence Length of sequence - 100788 bp Number of predicted genes - 96, with homology - 94 Number of transcription units - 33, operones - 18 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 1439 2054 ## NWMN_1345 hypothetical protein + Term 1464 - 1510 5.2 + Prom 1514 - 1573 8.0 2 1 Op 2 . + CDS 1625 - 2890 1591 ## COG3919 Predicted ATP-grasp enzyme + Term 2899 - 2952 16.2 - Term 2886 - 2940 11.0 3 2 Tu 1 . - CDS 2942 - 4906 1599 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Prom 5189 - 5248 8.9 4 3 Op 1 . + CDS 5271 - 5894 579 ## COG4767 Glycopeptide antibiotics resistance protein 5 3 Op 2 . + CDS 5965 - 7302 2082 ## COG0166 Glucose-6-phosphate isomerase + Term 7349 - 7383 5.3 + Prom 7312 - 7371 4.4 6 4 Op 1 . + CDS 7418 - 8767 1379 ## COG0477 Permeases of the major facilitator superfamily + Prom 8773 - 8832 6.9 7 4 Op 2 . + CDS 8859 - 9098 376 ## gi|256850887|ref|ZP_05556276.1| predicted protein + Term 9133 - 9166 1.2 - TRNA 9286 - 9361 56.3 # Gln CTG 0 0 - TRNA 9367 - 9438 62.2 # Glu CTC 0 0 + Prom 9443 - 9502 10.3 8 5 Tu 1 . + CDS 9531 - 10538 1206 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Term 10524 - 10562 6.4 9 6 Tu 1 . - CDS 10567 - 11922 1442 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 12081 - 12140 6.7 10 7 Op 1 3/0.000 + CDS 12061 - 12666 565 ## COG1435 Thymidine kinase 11 7 Op 2 32/0.000 + CDS 12701 - 13789 1780 ## COG0216 Protein chain release factor A 12 7 Op 3 10/0.000 + CDS 13782 - 14624 302 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 13 7 Op 4 . + CDS 14624 - 15625 1294 ## COG0009 Putative translation factor (SUA5) + Term 15638 - 15671 4.0 + Prom 15627 - 15686 11.2 14 8 Tu 1 . + CDS 15711 - 16340 897 ## COG0035 Uracil phosphoribosyltransferase + Prom 16371 - 16430 5.8 15 9 Op 1 40/0.000 + CDS 16472 - 17188 676 ## COG0356 F0F1-type ATP synthase, subunit a 16 9 Op 2 37/0.000 + CDS 17210 - 17425 385 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 17 9 Op 3 38/0.000 + CDS 17464 - 17973 716 ## COG0711 F0F1-type ATP synthase, subunit b 18 9 Op 4 41/0.000 + CDS 17973 - 18521 725 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 19 9 Op 5 42/0.000 + CDS 18536 - 20050 1757 ## COG0056 F0F1-type ATP synthase, alpha subunit 20 9 Op 6 42/0.000 + CDS 20061 - 21023 1351 ## COG0224 F0F1-type ATP synthase, gamma subunit 21 9 Op 7 42/0.000 + CDS 21045 - 22487 1968 ## COG0055 F0F1-type ATP synthase, beta subunit 22 9 Op 8 . + CDS 22499 - 22942 604 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 22945 - 22985 8.3 23 10 Op 1 . + CDS 22993 - 23229 250 ## LBUL_0645 hypothetical protein + Prom 23231 - 23290 2.9 24 10 Op 2 . + CDS 23310 - 24299 1484 ## COG1077 Actin-like ATPase involved in cell morphogenesis 25 11 Op 1 . + CDS 24408 - 24596 154 ## COG0759 Uncharacterized conserved protein 26 11 Op 2 . + CDS 24605 - 24832 322 ## lhv_0815 hypothetical protein 27 11 Op 3 . + CDS 24852 - 26042 1126 ## COG0772 Bacterial cell division membrane protein + Term 26047 - 26088 9.2 - Term 26035 - 26076 9.2 28 12 Tu 1 . - CDS 26102 - 26542 678 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 26622 - 26681 10.0 29 13 Op 1 . - CDS 27190 - 28488 1318 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 30 13 Op 2 . - CDS 28485 - 28952 410 ## COG5506 Uncharacterized conserved protein - Prom 28972 - 29031 1.9 - Term 28967 - 29017 11.2 31 14 Tu 1 . - CDS 29034 - 29741 1212 ## PROTEIN SUPPORTED gi|227526453|ref|ZP_03956502.1| 30S ribosomal protein S4 - Prom 29822 - 29881 6.5 + Prom 29639 - 29698 10.6 32 15 Op 1 3/0.000 + CDS 29939 - 31672 1714 ## COG4477 Negative regulator of septation ring formation + Term 31719 - 31748 1.4 + Prom 31676 - 31735 2.9 33 15 Op 2 7/0.000 + CDS 31759 - 32913 1150 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 34 15 Op 3 . + CDS 32923 - 34137 1407 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase 35 15 Op 4 . + CDS 34137 - 34841 690 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 34989 - 35048 5.1 36 16 Op 1 8/0.000 + CDS 35102 - 37753 3188 ## COG0525 Valyl-tRNA synthetase 37 16 Op 2 . + CDS 37755 - 39011 945 ## COG0285 Folylpolyglutamate synthase 38 16 Op 3 . + CDS 39001 - 39681 750 ## COG0637 Predicted phosphatase/phosphohexomutase 39 16 Op 4 4/0.000 + CDS 39716 - 40339 600 ## COG2003 DNA repair proteins + Prom 40341 - 40400 5.0 40 16 Op 5 22/0.000 + CDS 40438 - 41442 1357 ## COG1077 Actin-like ATPase involved in cell morphogenesis + Term 41444 - 41475 0.9 41 16 Op 6 . + CDS 41494 - 42351 933 ## COG1792 Cell shape-determining protein 42 16 Op 7 . + CDS 42351 - 42896 622 ## LJ0964 rod shape-determining protein MreD + Term 42900 - 42936 5.1 - Term 42882 - 42929 9.5 43 17 Tu 1 . - CDS 42939 - 43058 99 ## - Prom 43124 - 43183 6.0 + Prom 42924 - 42983 6.3 44 18 Tu 1 . + CDS 43150 - 43479 240 ## LCRIS_00820 hypothetical protein + Term 43540 - 43579 6.0 45 19 Tu 1 . - CDS 43481 - 43684 176 ## gi|297205803|ref|ZP_06923198.1| endoribonuclease L-PSP - Prom 43869 - 43928 5.5 + Prom 43545 - 43604 8.8 46 20 Op 1 29/0.000 + CDS 43677 - 44108 544 ## COG2001 Uncharacterized protein conserved in bacteria 47 20 Op 2 . + CDS 44105 - 45058 814 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 48 20 Op 3 . + CDS 45071 - 45445 412 ## LGAS_1208 protein required for the initiation of cell division 49 20 Op 4 4/0.000 + CDS 45448 - 47610 2305 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 50 20 Op 5 28/0.000 + CDS 47631 - 48590 1015 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 51 20 Op 6 4/0.000 + CDS 48596 - 49966 1792 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 52 20 Op 7 3/0.000 + CDS 49969 - 51081 1262 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 53 20 Op 8 25/0.000 + CDS 51112 - 51966 839 ## COG1589 Cell division septal protein + Prom 51968 - 52027 2.7 54 20 Op 9 35/0.000 + CDS 52048 - 53418 1264 ## COG0849 Actin-like ATPase involved in cell division 55 20 Op 10 . + CDS 53433 - 54806 1603 ## COG0206 Cell division GTPase 56 20 Op 11 . + CDS 54822 - 55283 580 ## COG1799 Uncharacterized protein conserved in bacteria 57 20 Op 12 . + CDS 55283 - 55570 337 ## LCRIS_00832 cell division membrane protein 58 20 Op 13 6/0.000 + CDS 55614 - 56438 1149 ## PROTEIN SUPPORTED gi|227526426|ref|ZP_03956475.1| ribosomal protein S4e 59 20 Op 14 6/0.000 + CDS 56444 - 57139 830 ## COG3599 Cell division initiation protein + Term 57266 - 57314 0.5 + Prom 57179 - 57238 3.4 60 20 Op 15 . + CDS 57356 - 60148 3203 ## COG0060 Isoleucyl-tRNA synthetase 61 20 Op 16 2/0.000 + CDS 60148 - 60369 301 ## COG1278 Cold shock proteins 62 20 Op 17 . + CDS 60369 - 60935 755 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 63 20 Op 18 . + CDS 60928 - 61206 241 ## gi|256850941|ref|ZP_05556330.1| predicted protein 64 20 Op 19 . + CDS 61220 - 61909 589 ## COG0775 Nucleoside phosphorylase 65 20 Op 20 . + CDS 61928 - 63091 1466 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 66 20 Op 21 . + CDS 63143 - 63478 455 ## FI9785_1219 hypothetical protein 67 20 Op 22 . + CDS 63492 - 64619 1536 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + Term 64625 - 64677 12.1 + Prom 64621 - 64680 7.8 68 21 Tu 1 . + CDS 64769 - 73354 9526 ## LJ0382 hypothetical protein 69 22 Op 1 1/0.000 - CDS 73451 - 73759 434 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 70 22 Op 2 . - CDS 73771 - 74169 475 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain - Prom 74195 - 74254 7.6 + Prom 74180 - 74239 11.7 71 23 Op 1 . + CDS 74273 - 75160 840 ## COG0583 Transcriptional regulator 72 23 Op 2 . + CDS 75179 - 75838 754 ## COG0406 Fructose-2,6-bisphosphatase 73 23 Op 3 . + CDS 75838 - 76479 674 ## LGAS_1187 TPR repeat-containing protein 74 23 Op 4 . + CDS 76479 - 78833 2224 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 78870 - 78929 8.2 - Term 78863 - 78912 8.1 75 24 Op 1 7/0.000 - CDS 78941 - 80623 1703 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 76 24 Op 2 1/0.000 - CDS 80627 - 80851 350 ## COG5503 Uncharacterized conserved small protein - Prom 80920 - 80979 5.6 - Term 80955 - 81001 6.2 77 24 Op 3 . - CDS 81030 - 81584 634 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 81606 - 81665 5.7 + Prom 81654 - 81713 5.4 78 25 Tu 1 . + CDS 81819 - 83663 2319 ## COG1217 Predicted membrane GTPase involved in stress response + Term 83675 - 83730 13.2 + Prom 83674 - 83733 8.9 79 26 Op 1 . + CDS 83771 - 84964 1401 ## COG0772 Bacterial cell division membrane protein 80 26 Op 2 . + CDS 84961 - 85293 241 ## lhv_0884 hypothetical protein 81 26 Op 3 14/0.000 + CDS 85290 - 85841 380 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 82 26 Op 4 4/0.000 + CDS 85843 - 86340 323 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 83 26 Op 5 . + CDS 86330 - 87361 408 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 87366 - 87397 1.0 84 27 Op 1 4/0.000 + CDS 87440 - 88090 481 ## COG1555 DNA uptake protein and related DNA-binding proteins 85 27 Op 2 4/0.000 + CDS 88059 - 90311 1000 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 86 27 Op 3 . + CDS 90325 - 91311 816 ## COG1466 DNA polymerase III, delta subunit + Term 91323 - 91357 3.2 - Term 91310 - 91344 3.2 87 28 Tu 1 . - CDS 91363 - 91614 396 ## PROTEIN SUPPORTED gi|227526394|ref|ZP_03956443.1| 30S ribosomal protein S20 - Prom 91792 - 91851 7.5 + Prom 91672 - 91731 7.7 88 29 Op 1 2/0.000 + CDS 91821 - 92090 453 ## PROTEIN SUPPORTED gi|227526393|ref|ZP_03956442.1| 30S ribosomal protein S15 + Term 92104 - 92139 5.1 + Prom 92111 - 92170 6.3 89 29 Op 2 . + CDS 92230 - 93969 2122 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 90 29 Op 3 . + CDS 93962 - 94795 802 ## LCRIS_00864 BS_ysoA-like protein with TPR repeats + Prom 94797 - 94856 4.7 91 30 Tu 1 . + CDS 94970 - 96160 1368 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 96176 - 96217 7.4 + Prom 96195 - 96254 11.8 92 31 Op 1 4/0.000 + CDS 96362 - 97675 1900 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) + Term 97681 - 97739 3.5 + Prom 97703 - 97762 3.1 93 31 Op 2 4/0.000 + CDS 97789 - 99072 251 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 94 31 Op 3 . + CDS 99047 - 99646 667 ## COG0218 Predicted GTPase + Term 99652 - 99683 3.1 95 32 Tu 1 . - CDS 99664 - 99804 222 ## - Prom 99830 - 99889 8.3 + Prom 99926 - 99985 4.5 96 33 Tu 1 . + CDS 100070 - 100525 453 ## Ldb0783 hypothetical protein + Term 100617 - 100643 -0.3 Predicted protein(s) >gi|260196050|gb|ACQN01000017.1| GENE 1 3 - 1439 2054 478 aa, chain + ## HITS:1 COG:no KEGG:NWMN_1345 NR:ns ## KEGG: NWMN_1345 # Name: ebh1 # Def: hypothetical protein # Organism: S.aureus_Newman # Pathway: not_defined # 3 427 5839 6255 7031 103 29.0 2e-20 LTAANTLNSDKGDNEDAEAVQAKIDALTNAKLDGEDQLAKAKSDAIDKINALTNLNKAQK EAAIAQVNAAETKDAIDPIVETATALDGKMSDLKKAIEAADAKKSTTAYTQASDTTAFDT ALDNANTLNSDKGDNEDAEAVQAKIDALTNANLDGDKQLQDAKDAAIAKINALENLNKAQ KQAAIEAVNNATTVAEIQPIVDTVTTLDGKMGDLKKAIEAADAKKSTTAYTQASDTKDFD DALTAVNTLNSDNGDNEGAEAVQAKIDALNNAKLNGERIALQKAVEVAIAKIEGINPDYI YYNSDSELQSAFKEAVAKGKILLEQRDASDENYQLAREAIEAAMKALNGQLTDKTALQTS VSQSGEVHKSVAYLNASEAAKKAYDDALANAEAVLADKNATQADVDAALAKLNAALQKLD GKESPAKPTVKKNTVKLGTNADRLPQTGSHESVASEVGLGILALGLAALGLVKKRKED >gi|260196050|gb|ACQN01000017.1| GENE 2 1625 - 2890 1591 421 aa, chain + ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 2 410 4 406 408 422 53.0 1e-118 MTKKFTPILLGSDINVYGMARSFHEAYGIKVEAWAGSPLAATKYSKIVDVKIYPGFSEDP EFMNVMKKKIEEYKNHEEPVILIACGDGYAELLAKHKAELSEAFIVPYIEYDLLKKLISK EGFYEYAEKYGLPYPGTKIITMDEYKAGNYLTIPFNYPVELKPEDPVSWLDCQFEGRKKT FTLKSEAELKDIVTKIYTHGYKADLILQDFIPGDDSHMRVLNAYVDKNHKVKMMCLGHPL LEDPTPQSIGNYMAILPEFNQDLYDQVQSFLEKINYTGMANFDIKYDERDGKFKFFEINL RQGRSSFYVTMNNCNLARWYIDDYVEDDLANRETVYANKNNNDHVLWLGVPKKIFTEYAV DNEAKHEATSLIEAGKYGTTVFYEHDRSFMRMLLMKYMFHNYIGRFKKYFEVNKGQYFEK K >gi|260196050|gb|ACQN01000017.1| GENE 3 2942 - 4906 1599 654 aa, chain - ## HITS:1 COG:lin0927 KEGG:ns NR:ns ## COG: lin0927 COG1368 # Protein_GI_number: 16799998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Listeria innocua # 1 577 78 642 653 528 49.0 1e-149 MLVIDFINTALLFANIIYYRQFTDFLTIKTIANTSKVSQGLGKSAVSLLHFDDIFIWLDL IIIILLLIFKIIKIDQKKYSFSNSFAVTSFACFLLGLNFFLSETSRPRLLRNTFDRVYVV KYLGITSYTAYDAVKSLQSGTNSKTANAEELNKILAFTKKNYASPNIQYFGKAKGKNVII IHLESFQQFLINLKVNGKEVTPFLNSLYKDKNTLSYENFYNQVGLGRTSDAENMLETGTY GISDGSLFTSLGSNNTFQAAPQILRQSGYTSAVFHGNIATFWNRNDVYKNMGYNYFFYKN YYSSNKEDSSGYGIKDKLLFAESIKYLEQMQQPFYTKFITVTNHIPFDLDDEDKDPDFKT TNTSDATVNGYFLTAHYLDSALKEFFDYLKKSGLYKNSMIVIYGDHYGLSSSDYNAISSV LGKTSDWTSYDTAQFQTVPFMIHMDGLKGGIKKEYAGEIDVLPTILHLLGVNTKDYIQFG TDMLSKEHKQIVVFRNGTIVTPKYTIINGKATSGNVYDTKTGKLIKTFTNTQKKELRKLV KYESESLHYSDTLNNRDLLRFYTPKGFIPVTPTQFNYITEFQQMIKLREQLGKASTSLYS QHKGTTTNLYQTDAPELKGRTTEITTVPESISGSASSSSSSSTSSSNQSSSSSK >gi|260196050|gb|ACQN01000017.1| GENE 4 5271 - 5894 579 207 aa, chain + ## HITS:1 COG:CAC0829 KEGG:ns NR:ns ## COG: CAC0829 COG4767 # Protein_GI_number: 15894116 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Clostridium acetobutylicum # 65 202 15 153 308 71 35.0 1e-12 MMIFLGPLYSFLAKHLAKNINHFALVKLVMISLDKSIFYFLIFAFLRLLWLLLVRKRRSH FSESLVWIFTFYVMFLLATTTFRESYFPWQLAFNWNRPLSDINLIFLKETWKLTQGVTLF DFIYNCFGNILCFMPFGLLFPNLIKKRTCFLQTAIAGMCLSLFIETMQFGLNTGVSDIDD VFFNTIGAILGYLAYIFIKKVAHSKTL >gi|260196050|gb|ACQN01000017.1| GENE 5 5965 - 7302 2082 445 aa, chain + ## HITS:1 COG:L0012 KEGG:ns NR:ns ## COG: L0012 COG0166 # Protein_GI_number: 15674150 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Lactococcus lactis # 1 445 1 448 448 588 64.0 1e-167 MSLVHFDSSKLAPFVHDNELKEMQAMVNAADSELRQGTGAGNDFRGGLDLPVNYDKDEFA RIKKAAKKIQSDSEVLIGIGIGGSYLGAQAAIEFLNSAFYGKEDNGYPTVVFCGNSISGS YLADLINWVGDKDFSINVISKSGTTTEPSIAFRILKAKLIEKYGKEEANKRIYATTDRAK GALKTEADAEGYEEFVVPDDLGGRFSVLSAVGLLPIAVAGGDIDKLMEGAAKAREDYTDT DVTKDSPYQYAALRNILYRKGYTTELLENYEPTLRMFGEWWKQLMGESEGKDQKGIYPSS ANFSTDLHSLGQYIQEGRRNLMETVVRVENPRFDVEIPSDKENLDQLNFLAGKTMNYVND RAYEGVVLAHTDGGVPVMTVNIPDQKELTLGYLIYFFELAVGISGYLNGINPFNQPGVEE YKRNMFGLLNKPGYEELHDDLTKRL >gi|260196050|gb|ACQN01000017.1| GENE 6 7418 - 8767 1379 449 aa, chain + ## HITS:1 COG:L180636 KEGG:ns NR:ns ## COG: L180636 COG0477 # Protein_GI_number: 15673521 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 3 436 21 452 457 249 39.0 1e-65 MTAILMVAVLAFLGILTETSLNVTFPEMMKDFKVSLDTIQWTTTGYLLAIAILMISSSYL NKRFTARAIFLFASGSFLIGSLLCLFSSNFEIMLLGRIISSCGAGLATPLMFNLVTELMP REEIGFYMGLAGLVLAMAPSLGPSFGGIIAYYFNWRVIFSISSLLAIIVILIGLRVIGKY HEVSHPSFDWVRYIVISLFMVDFTLMINHLSSGFNFQFFLYLVFAILSMWLFIHLSKNSQ KTLINLAIFKDAAFVYAMLAFFLIQFINIGVSFVLPNYVQIVNGASTLAGGLMLLPGSVI FSLMTPYFGHLYDEKGAKLPLYLGGTFLLIAVILLAILGMKLNPWLVGIIYSLLTCGMRM AFNNTLTLGIESSPKQLHADATAIMQTGQQFAGSIGTSVLAAIISFSQSTSHGSEAFLMA QGCEVAFIFVTFIAILIMICYWQLFTKVN >gi|260196050|gb|ACQN01000017.1| GENE 7 8859 - 9098 376 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850887|ref|ZP_05556276.1| ## NR: gi|256850887|ref|ZP_05556276.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 79 12 90 90 135 100.0 6e-31 MENKMTHSASILNARLLWKIVWVVVYGITAFYTYLSFTDMAHMMKWMMYAMAWMAGGMLA EAVVGLIYHCCGKDGNGCH >gi|260196050|gb|ACQN01000017.1| GENE 8 9531 - 10538 1206 335 aa, chain + ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 10 327 10 308 328 204 38.0 3e-52 MSDFFRTQYLIESMVSERIVPGVNYAFIKNNQVFKSTIGFSEIYPSIKQLSPYAEYDLAS LTKVLGTTNVFLKLYQEGKLNFNEPLGDFLPEFQNQPVRLFHLLTHISGIRGWIENRDQL PASDLLEAIKNLPVTDEFETKMRYADTNFILLGLVLEQIYHKNVQDIIMDEVIKPAGLQH TTFKPAVEDCVPTAVVDGKLLQGIVHDPKARVLGKHCASAGLFANIDDLIKLTFGYLGRN NLLPFSQELTSELFAIKSNSKKVHPRSWGWDLVFDPNDQHPLIFHTGFTGTFILIDRRKQ TAMIVLTNRVHPTGHNQIFLTMRQRIVDSFLAENK >gi|260196050|gb|ACQN01000017.1| GENE 9 10567 - 11922 1442 451 aa, chain - ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 1 440 1 438 449 439 48.0 1e-123 MNLKSGIAKLSGKSSHWVLHNIFKGGTSFPGKLAMRIDPNILANLAKDYETIIVTGTNGK TMTTALIVNALKEKYGEILTNPSGSNMQQGIVTAFLSHKAKRHGRKLAVLEVDEANVKRV TELLHPKAYVLTNIFRDQMDRYGEIYTTYDKIIDGIKLAPDAVVIANGDASIFSSVELPN KKIFYGFETKADEAQNDFKASVNTDGVLCPKCNHIIHYHAISYANLGDYFCPNCGFKRPN LSYRLKEITERTPNSIKFRIENTEFAIGIGGTYNIYNALAAFSVAREFDVSEAEIANAFA KNKRIFGRQELISYADKEINLILVKNPVGLNEVLSLLNTEKSDYTLATLLNAHHADGIDT SWIWDADYEGLDKSKVKQVLVGGERHHDMGFRLEVAGFDPGTMEVTPDDNTLLTRIKEAP TKKVYILATYTAMLALRSTLYDQKILKNKIN >gi|260196050|gb|ACQN01000017.1| GENE 10 12061 - 12666 565 201 aa, chain + ## HITS:1 COG:L184871 KEGG:ns NR:ns ## COG: L184871 COG1435 # Protein_GI_number: 15672575 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Lactococcus lactis # 1 195 1 187 189 254 62.0 1e-67 MAQLFFCYGTMSSGKTIEILKVAHNYQMQGRKIALMTSGKDDRSGKGIIASRVGLNSKAT PIEDDMNIFNYVKKQNEKDIANGDGAIACVLIDEAQFLYKHHVLECAKIVDELHIPVMTF GLKNDFQNNLFEGSQYLLLYADKIEEMKTICHYCGRKATMVIRVQDGKAVYEGAQLQIGG DESYYPVCRFHYNHPGQKRED >gi|260196050|gb|ACQN01000017.1| GENE 11 12701 - 13789 1780 362 aa, chain + ## HITS:1 COG:L0373 KEGG:ns NR:ns ## COG: L0373 COG0216 # Protein_GI_number: 15672577 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Lactococcus lactis # 7 357 4 355 357 406 61.0 1e-113 MDKVMAQLEGLVARYEEIQELMADPEVINDTKRYMEISKEEADMREVVQKYRKYQEDQKT ISDNKEIIENESDEDLVEMAKEENSDLEKEVAELEEEIKILMLPKDPNDDKDIIMEIRGA AGGDEASLFAGDLLRMYEKYAETQGWKISVIDEETTEVGGYKHVAIMITGDKVYSKLKYE NGAHRVQRIPVTESQGRVHTSTATVAVMPEYEQVDIDLDPKDIRVDVYRSSGAGGQHINK TSSAVRMTHLPTGIVVAMQDQRSQQQNRAKAMEILKSRVYDYYESQNQASYDEKRKNAVG TGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEIISALIVHYQTKQLEELAED NA >gi|260196050|gb|ACQN01000017.1| GENE 12 13782 - 14624 302 280 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 23 277 39 289 294 120 34 2e-26 MPKTLKQLVQLGQMRAPEASIEDISYLISERAGLTPSEFQLKQDSEASSKLEKQLQKDFK KLARNVSPQYILGYAWFLGYKIMVQRGVLIPRFETEELVEWALDHLHDGMRILDLGTGSG AIMVALAKEASKKGIKDLTLYASDISDSALRTCEENFLTFDLDVTVRKANVLIGLEKFDL IISNPPYIRPEEKNLMDSNVLQNEPEEALFGGKDGLEFYRRFAKQVREHLTDEGQFFLEF GFSEKDDLAKLFTEELPDFKVEFKDDLAGKPRMVYGKWQK >gi|260196050|gb|ACQN01000017.1| GENE 13 14624 - 15625 1294 333 aa, chain + ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 13 327 20 339 345 261 45.0 9e-70 METQILKKDQIDQAVEFLKNGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLI VTVSDEDMMKQYAKFIPERAEKLIKHFWPGPLTLLLLVKEGSLPTVVTGGLKTAAFRCPD DELTHELISKLGYPIVGPSANTSTKPSPTTAEHVYHDLKGKISAIIDGGATEVGLESTII DLSVETPIVLRPGQITPEELSKVLGEKVLINTGKVSDKTIPKAPGMKYRHYAPSAPVWVV DDVKDFSKISYTSDTAVAALDSVLDTLDLPAENKFSLGKDLKDADHNLFSALRFFDDEAS IKTIYVQGFDEGEQSLAYMNRLNKAAAGHHYKN >gi|260196050|gb|ACQN01000017.1| GENE 14 15711 - 16340 897 209 aa, chain + ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 298 69.0 4e-81 MGKFTVLNHPLIQHKLTIIRKKDTGTNEFRQIVGEIGGLMVYEMTRDLPLKNVEIETPIG KTTQKELAGKKLVIVPILRAGLGMVDGVLQMIPSAKVGHIGMYRDEETLKPHEYFFKMPQ DIEERDVIIVDPMLATGGSANMAIDALKKRGAKNIRLAVLVAAPEGVKNIQEAHPDVDIY AAAEDEKLMDNGYIFPGLGDAGDRLFGTK >gi|260196050|gb|ACQN01000017.1| GENE 15 16472 - 17188 676 238 aa, chain + ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 2 238 3 237 238 164 41.0 1e-40 MEKPEILRLFGLTFNVSNILGGTLVALIVFGMCFWLARKVELRPGKKQNVLEYIIDFTDG IVKSNVEDEDAQKHLSLYAFVLFLFIWWLNQLGLFLEVKDMNGLMLFKSPTADPTITMTM AMMTLLLSYNFGVQKFGTFGYLKNYARPLPFFLPINVMEEFTNFLTLSLRLYGNIYAGEV LLTLIGNDFAHSFGIGTIILSAPLTIIWQGFSVFIGSIQAYVFVTLSMVYIGKKVTQE >gi|260196050|gb|ACQN01000017.1| GENE 16 17210 - 17425 385 71 aa, chain + ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 1 68 1 68 70 59 57.0 1e-09 MKFLAVAIAAGLAALAASYGNGKVISTTIQGMARQPESASELRSTMFIGVGLIEAVPILA VVIAFLIFFLG >gi|260196050|gb|ACQN01000017.1| GENE 17 17464 - 17973 716 169 aa, chain + ## HITS:1 COG:SP1512 KEGG:ns NR:ns ## COG: SP1512 COG0711 # Protein_GI_number: 15901359 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Streptococcus pneumoniae TIGR4 # 15 169 9 163 164 96 38.0 2e-20 MTNILFAAEKSDLYLGDTIYYLILFAILLLAVKHFAWGPVTDMMEKRRQQVIEDIDKAAD ERKKAEILAGEREEQLKSSRQEATQILSTAKTNAEAAGKDILNQANEEAKNIREKAKADA IQAKNDALNEAQAQVADISVQIAEKVIAKNLSAADQKDLVDQFIKGLNK >gi|260196050|gb|ACQN01000017.1| GENE 18 17973 - 18521 725 182 aa, chain + ## HITS:1 COG:lin2676 KEGG:ns NR:ns ## COG: lin2676 COG0712 # Protein_GI_number: 16801737 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Listeria innocua # 7 178 6 177 179 89 32.0 3e-18 MALSREEISARYGAALFGYCQDNNSLDNVYSELQVLKTAILDNPRLSEFLSSPVYSMEEK KQLLKNISADFSQELQQFLELLLDYGRFAVLPDIVNQFNMRYNKLNNIAFGKVISAVKLD DEQLHKLGQAYAEKYDLKELKLTNQVDPSIIGGVILEVEDYIIDGSVKNKLKKIRAQLVE NI >gi|260196050|gb|ACQN01000017.1| GENE 19 18536 - 20050 1757 504 aa, chain + ## HITS:1 COG:SPy0758 KEGG:ns NR:ns ## COG: SPy0758 COG0056 # Protein_GI_number: 15674806 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 496 1 496 502 766 76.0 0 MSIKAEEISSLIKKQLEHFDDKLDIDEVGVITYVGDGIARAHGLNNVLANELLEFENGSY GIAQNLETNDVGIIILGKYDNIREGDRVKRTGRIMEVPVGEALIGRVVNPLGQPVDGLGE IKTDKTRPIESKAPGVMDRQSVNQPLQTGIKAIDALVPIGRGQRELIIGDRKTGKTSLAI DTILNQKGQDVICIYVAIGQKESTIRSQVETLKRFGAMDYTIVVEAGPSAPAPLLYIAPY AGTAMGEEFMYNGKDVLIVFDDLSKQAVAYRELSLLIRRPPGREAYPGDVFYIHSRLLER SAKLSDKLGGGSLTALPFIQTEAGDISAYIPTNVISITDGQIFLQSDLFFAGTRPAIDAG ASVSRVGGSAQIKAMKKVAGTLRVDLASFRELESFAQFGSDLDQATQAKLNRGRRIVEVL KQPLHEPLPVEKQVLILYALTHGFLDSIPVEDVARYEHELDSNFESSHADLLKTIRETGD LPDEDEMNEAIKSFNEGFTPTSKN >gi|260196050|gb|ACQN01000017.1| GENE 20 20061 - 21023 1351 320 aa, chain + ## HITS:1 COG:SPy0759 KEGG:ns NR:ns ## COG: SPy0759 COG0224 # Protein_GI_number: 15674807 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pyogenes M1 GAS # 1 320 1 291 291 256 44.0 3e-68 MPASLLELKKKIASVKQTGKITQAMRMVSAAKLNQTEKKDKGYTLYNDTLKKTVSHLMSA QIVDHLKSENVPVNSKNLAKLDYTNVFGLGIVSDLIQARPEIKSTGYLVITGDRGLVGSY NSTVIKNMMGLFEDSKAENKDVKVLAVGRVGAQFFKKNNMNVVYENSGISDVPSFNEVLP IVSTAIKMYLNGVYDELYVCYTHHVNSLSSAFRVEKMLPISDLDIGSEEAEAHAKLEYDI DPDIDTALKALLPQFARSTIYGAILDAKTAEHASSMTAMQSASDNASDLVSRLTTQMNRA RQAQITTELSEIIGGANALE >gi|260196050|gb|ACQN01000017.1| GENE 21 21045 - 22487 1968 480 aa, chain + ## HITS:1 COG:SP1508 KEGG:ns NR:ns ## COG: SP1508 COG0055 # Protein_GI_number: 15901355 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 465 1 467 468 726 80.0 0 MSEGEIVQVVGPVVDVQFPIDKNLPDINNALHVIKSDDETITLEVTLELGDGVLRTISME STDGLRRGMKVVDTGAPISVPVGDDTLGRVFNVLGDPIDNGPKFPADHRRDSIHKEAPKY SELTTSREILETGIKVIDLLEPYVRGGKVGLFGGAGVGKTTIIQELIHNIAQEHGGISVF TGVGERTREGNDLYFEMKASGVLDKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQ DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQA VYVPADDYTDPAPATTFAHLDATTNLERSLVEQGIYPAVDPLESTSSALDPEVVGEEHYE VATRVQHVLQRYHELQDIISVLGMDELSDEEKMIVARARKIQFFLSQNFFVAETFTGVPG SYVPVKETIKGFKMILDGHLDDLPEDAFRGVGPIEDVIKKAEKMGVTPSDPEAKALLAEK >gi|260196050|gb|ACQN01000017.1| GENE 22 22499 - 22942 604 147 aa, chain + ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 8 142 4 137 138 120 48.0 1e-27 MAESEKLMTVNVVTPDGLIYSHKSSIVVMRAIDGERAVMYNHTPFLTPLVIGDVRVKRGK QLNNRVDHIAVNGGYIDFSNNVATIIADSAERARNIDLSRAEAAKKRAEQHLKEAKASHN ESSYERASVALKRAVNRINVHQSTQQK >gi|260196050|gb|ACQN01000017.1| GENE 23 22993 - 23229 250 78 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0645 NR:ns ## KEGG: LBUL_0645 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 76 1 76 76 70 56.0 1e-11 MQQLGLHALLSLFIYFVTTALAFQAIKCLDLSKLFKIKKIFEEQILDIFLALGLGYLVGQ FFIAFMDYSLTLTNLFNN >gi|260196050|gb|ACQN01000017.1| GENE 24 23310 - 24299 1484 329 aa, chain + ## HITS:1 COG:BH3739 KEGG:ns NR:ns ## COG: BH3739 COG1077 # Protein_GI_number: 15616301 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 2 329 3 330 334 394 61.0 1e-109 MAKDIGIDLGTANVLINVSGKGIVLNEPSVVAVNTENNEVVAVGTEAYEMVGRTPGNIRV IRPLKNGVIADFDITEAMLSYFIEKLNVKGFMAKPNILICAPTGVTSIEQKAIIQAAEKS GGGRVYLDFEPKVAAVGAGLDIFKPQGNMVIDIGGGTTDIAVLSMGEIVTAKSLRWAGDK MNQAIVSYIKNNRNLLIGSRTAEQIKIEIGSAFEPDPEKKITVRGRDMVAGLPKQTTISA IEVQESLHDGLMSIVRATKEVLEQTPPELSADIIDRGIMLTGGGALLANLDKLIAYYLQV PVLTADSPLEAVALGTGALLKNIEKHQGR >gi|260196050|gb|ACQN01000017.1| GENE 25 24408 - 24596 154 62 aa, chain + ## HITS:1 COG:L122982 KEGG:ns NR:ns ## COG: L122982 COG0759 # Protein_GI_number: 15673654 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 52 34 86 88 68 62.0 3e-12 MIDSLRKHGPLKGLIMGIARIIRCNPFVRGGVDPVPDHFTLRRNPHPEKYEDPIIAKKFH SK >gi|260196050|gb|ACQN01000017.1| GENE 26 24605 - 24832 322 75 aa, chain + ## HITS:1 COG:no KEGG:lhv_0815 NR:ns ## KEGG: lhv_0815 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 75 1 75 75 110 84.0 2e-23 MSKKLENISIEVNELKGKSIPSWEVIIPNKKAIGIIEKVEGRYRATTNKSNNVLFSKSLE SSINDLLSYFALHEK >gi|260196050|gb|ACQN01000017.1| GENE 27 24852 - 26042 1126 396 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 384 4 387 414 294 42.0 2e-79 MAKLQNKTDIYDRVAWGIVGAIALLAIISFYAIWIAASNDSTLGTPFKAVIGQAVWYILS IALVIVIMQFDADQLFKIAPYAYALGIILLILVLIFYDRSSFVNNGAKSWFKLGSLTFQP SEVMKPAFILMLARIVKDHNEYYGHTWRNDWLLLGKIFAWLAPIAVLLKLQNDFGTMLVF FAIVGGVILVSGITWKIIVPTFIVIAVLGTTTILLVTKSWGQAFLGHFFKAYQFERINSW LDPSGDTSSGAYQLWQSMKAIGSGQIWGSGFGKSSVYVPVRSSDMVFSVLGESFGFVGGV VLIMIYLYLIIQMVMISFDTRNAFYSYISTGIIMMILFHVFENIGMSIDLLPLTGIPLPF VSQGGSALIGNMIGIGLILSMKFHNKDYIFSTAGDF >gi|260196050|gb|ACQN01000017.1| GENE 28 26102 - 26542 678 146 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 144 1 144 152 147 52.0 5e-36 MLKQYSHIQIAVDGSKEADLAFSKAVAIAKRNNANLEILHVIDTRSFQNVSSFDSAMVEQ VSADAKKKLEEYYDRAVKAGIKNVHYSIEFGSPKTIIAHEFPQKHQTDLIVLGATGLNAV ERLLIGSVTEYVTRTADCDVIVIRQK >gi|260196050|gb|ACQN01000017.1| GENE 29 27190 - 28488 1318 432 aa, chain - ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 1 423 3 421 427 516 62.0 1e-146 MKPLAYRMRPQDLTEVVGQSHLVGPGKIIRRMVEAKLLSSMILYGPPGIGKTSIASAIAG STKYAFRMLNAATDTKKDLQQVALEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIV LIGATTENPYISISPAIRSRCQIFELHPLSATDAQKAIHRALNDEERGLGKYHVQLQKDA EQLLIEKGNGDLRATLNALELAVLSTYAEKGRNKDQQLIITQEIMADSIQVKSQNFDANG DGHYDLVSAFQKSIRGSDTDAALHYLARLIESGDLISICRRLLVIAYEDIGLANPAACQH AALAVWTAQQIGLPEARIPLSNAVIELSLSPKSNSGISAIDSALDVIRTQKVSSIPNHLK DSHYSGAKKLGHGNNYLYPHDYANDWVAQQYLPSSLIHDSYFRPKGNSKIELALKNQYQR LKQMQENGLDNH >gi|260196050|gb|ACQN01000017.1| GENE 30 28485 - 28952 410 155 aa, chain - ## HITS:1 COG:BS_yueI KEGG:ns NR:ns ## COG: BS_yueI COG5506 # Protein_GI_number: 16080228 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 124 1 121 132 60 32.0 1e-09 MSENLNERLEQSSHGPLQTKPDERRRYLGSLRERVYLKMTITDLENPTSRQIFLNHINEY KDYQILINGKMDQNEAIDQIEASCAKENIPFTLISDENAQTNPDSAAILVVAKSAINKDR IAIKQVYPPEFPKEQLNQPKKESFWHKLFHRGDTE >gi|260196050|gb|ACQN01000017.1| GENE 31 29034 - 29741 1212 235 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526453|ref|ZP_03956502.1| 30S ribosomal protein S4 [Lactobacillus jensenii JV-V16] # 1 235 1 235 235 471 100 1e-132 MSENSTADERMQSLFQIFYSINIFYLFNGGFFMSRYTGPSWKRSRRLGISLSGTGKELAR RNYAPGEHGPNNRGRLSEYGMQLHEKQKLRWMFGLNERQFRNLFNRAGKIRQGEHGTNFM VLLERRLDNIVYRLGLATTREQARQLVNHGHILVDGKRVDIPSYEVKVGQEISLKEKSKN LQQVKDALEAVVSRPSFVSFDENKLTGSLVRLPERDEMEPEINEALVVEYYNKLL >gi|260196050|gb|ACQN01000017.1| GENE 32 29939 - 31672 1714 577 aa, chain + ## HITS:1 COG:L7722 KEGG:ns NR:ns ## COG: L7722 COG4477 # Protein_GI_number: 15674133 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Lactococcus lactis # 22 572 23 574 576 189 23.0 1e-47 MSSIQSLIIISIVVLLIATTGSMLMLNRRQSKILSFFEQDLNDLEDLGISADIKNLAQME LAGESLKTFNSWKKVYEKANDKIIPDLHERIEQCQEINTHYNLLRARKEIKAIDSAIDSV SEDLNKTKEVFRQLLESNRANKLQYDSLIKIYRDIRKEVLAASFYYGPALEKIEDELSEL ERHFNNAKNLSAQGDYVEGKRVLEKIDKRLAHLKDLLPRIKKAQNAIQDVYPEQLDELTS AYRKMRVDKLAVSEIDFLEEVKKLQTLLEKSRDLEARLEINELESNNAQLAKKIDGLYDV ITKEYSARPFVEQNQDKILRLLSHLENGSNQLIDKLEHIDQSYELTHGELQEAKDLSKEV SQMEEKYNHDVQALADGKGVYSEIKERWLKQLERISKIEKREKELVDEVDGLYEAEKMAN ESIAGFKQDVALIYRRLQRRNLPGKPDSFIQMYTLVVNEISHTSQELNQVRINMEKISEE MIQISDDVDRLKKEADQIINYAALVELTVQYSNKYRTNPKVAKARRTTMDLYSRAYNYKD ALDTIATAMEQVEPGSYQRIESAYYSQLSASDDEQDD >gi|260196050|gb|ACQN01000017.1| GENE 33 31759 - 32913 1150 384 aa, chain + ## HITS:1 COG:SPy0816 KEGG:ns NR:ns ## COG: SPy0816 COG1104 # Protein_GI_number: 15674857 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Streptococcus pyogenes M1 GAS # 1 370 1 369 373 362 50.0 1e-100 MIYFDNSATTRIFPAALETYNKVSEDIWGNPSSLHKLGDRAHQLLEASRKQIAGLLDVKP NEIFFTSCGSESNNLAIKESAFTKKEFGKHIITTSVEHASVANTFTALENMGYRVTRLPV DSEGRININDLRNSLDSDTTLVSIMGVNNEIGTIQPIIEAGELLENYPNIHFHVDNVQAF GKNIWKQVFCPRVDLMSLSAHKYHAPRGVGILYKKAGKMLLPLIDGGGQEKGLRSGTENL PAIAATAKAMRLVSEKEAENYEREYAVKEKIYNYLADKPGITIFSPLKSNFAPHVLTFSL LGIRGETLVHTLEQKGIYVSTTSACASKVSDEASTLASMKVDEKVATSSIRLSFDASNTL QEADKFIKVFDEIYRHFAKVNHLG >gi|260196050|gb|ACQN01000017.1| GENE 34 32923 - 34137 1407 404 aa, chain + ## HITS:1 COG:L183112 KEGG:ns NR:ns ## COG: L183112 COG0301 # Protein_GI_number: 15672361 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Lactococcus lactis # 3 387 5 389 406 487 62.0 1e-137 MQYTEVMVRYGELSTKGKNRKDFIGRLAGNVEKVLADLENVKIYPKHDRMHIVLNGASFE EVDRRLKKVFGIQTYSPVIRTEKTLEAIKKTALEIMQAVYKSGMTFKVNTKRADHRFEYD TNQLNLMVGDYLFDNLPNPKVEMKHPDVVLRLEVRQDAVYISNQLLHGPGGMPVGTAGKA VMMLSGGIDSPVASYLALKRGVDIEMVHFFSPPYTSDKALAKAKELTGILANYCGKITFI AVPFAEIQETIKEKLPEGYLMTIQRRFMLRLADMIREKRKGLAIFNGESVGQVASQTLES MAAINNVTTTPVIRPVATMDKTEIIRLAEEIGTFDLSVMPFEDCCTIFAPPRPKTKPKIE KAIEYEKRLDVEGLLQRAMEGIEISTIKPNEKFIDDQTADQDLL >gi|260196050|gb|ACQN01000017.1| GENE 35 34137 - 34841 690 234 aa, chain + ## HITS:1 COG:lin2436 KEGG:ns NR:ns ## COG: lin2436 COG1187 # Protein_GI_number: 16801498 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 1 233 1 232 233 213 51.0 2e-55 MRIDKYLANMKVGSRKEVHDLIKAKKVTVNGQLVKQAKQQVADTDIVKVADETIAYEQFY YFMLNKPAGVITATEDPQQKTVLDLIEHKDRYQGLSPVGRLDKDTTGLLLLTNDGQLNHN LLSPKKHVAKTYFVELDYEVSDELIVNFAKGVTLADGTKVSPSQLKIDKSNKKQGFITIH EGKFHQIKRMFGLFDLGVVRLKRISMGNLSLDENLLLGKYRKLTKAEISALKDS >gi|260196050|gb|ACQN01000017.1| GENE 36 35102 - 37753 3188 883 aa, chain + ## HITS:1 COG:SA1488 KEGG:ns NR:ns ## COG: SA1488 COG0525 # Protein_GI_number: 15927242 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 8 880 3 875 876 1167 62.0 0 MEVKMTNLAPKYNPNEVEEGRYQTWLDEDLFKPSGDKKAHPYSIVIPPPNVTGKLHLGHA WDTSIQDTLIRLKRMQGYDTLYLPGMDHAGIAMQAKVEAKLRKQGLDRHQMGREKFVKQV WDWKDEYANIIKSQWAKLGLSLDYSRERFTLDKGLSKAVRKVFVQLYNEGLIYRGQYIIN WDPKLETALSDIEVIHQDDKGAFYHVKYPFADGSGFVEIATTRPETMFGDVAVAVAPGDE RYKDIVGKELILPLVGRHIPIIEDQHVDPEFGTGLVKITPAHDPNDFLVGNRHDLKRINV MNANGTMNEECGKYAGMDRFDCREALVKDLEKEGYLIKVEPIVHSVGHSERSGVQVEPRL STQWFVKMKPLAEKALENQKTAGKIDFVPERFSQTFEQWMENVHDWVISRQLWWGHRIPA WYNKETGEMYVGEEAPKDIENWRQDEDVLDTWFSSALWPFSTLGWPDENAADFKRYFPTN ALVTGYDIIFFWVSRMIFQSLHFTKQKPFDHVVLHGLIRDEQGRKMSKSLGNGIDPMDVI DKYGADALRWFLLNGTAPGQDTRFSYTKMDSAWNFINKIWNASRFVIMNLPSDAKPAHMP DVAKFDLADKWIFDRLNHTVKEVNRLFDEFQFGEAGREMYNFIWNDFCDWYIEISKVALN GDDEDLKARKQENLIWILDQILRLMHPIMPFVTEKLWLSMPHEGKSISVASYPVTHTEFE NNDADNQMNFMIEVIKAVRNIRMEVNAPMSSSIDILIQLDKAEDKKILEDNAEYVQNFLH PKNMEVSTQVSAPKLAKTAVIPGAQIFVPLADIVDLDEELAKMEKEAKRLEGEVMRASKK LSNEGFVKNAPEAVIAKEKEKQADYESQLEAVKARMQELKESR >gi|260196050|gb|ACQN01000017.1| GENE 37 37755 - 39011 945 418 aa, chain + ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 6 414 2 425 427 221 33.0 2e-57 MNKFNTLSDFLNYLYALPRLHKKSDLSYIKQVLAEMDNPQDKVKTVHVTGTNGKGSTCYY ISNLLEKAGQKTGLFVSPYIREFNERIQLNSQNISIEDLLVGANYIYQILQKLKIELVTF EYEVALAFWYFAKKRCNYAVIEVGIGARHDKTNVIIPEVSVITTVGLDHEKIIGPTLQDI AFEKAGIIKDKRPVVLGNVPESILPIIQKEAQVKSAPMYQLNKDFSVMSAENKLLVHTKM GIYQFESRPLVEGFDIAIACQVLSLLNLSILPTEIEKIINLTKIPGRYQIIKTKPTIILD GAHNMQAMNNLIDFVNAEKNKGQIYVLITMMKDKDLSEVFTLFNHNEKITLTTIDYPRAA KKADFPAEVLEKYKYRKNAIQAYIDLKKNLKENDTLVVTGSFYLVSQILNFQEKIDAS >gi|260196050|gb|ACQN01000017.1| GENE 38 39001 - 39681 750 226 aa, chain + ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 10 204 7 196 221 89 28.0 5e-18 MQVKGLVGNIKGVIFDLDGLLVNSEKLYWQANIQAAQEAKLDIPEDSYLKLTGATAKDMQ NFYHKYFASEIERDAFIKRTDDLVWQWTDEGKLKLQKGVQEALDEFKSRGLHLAIASSNY KRVIEHAITKTGIKSYFDFYLSYDDVEKFELAPKPAGDIYELAAKELKLNKQELIIFEDS STGIAASKDAGIQGIMIPDLKSPSLKDKKNASLICTSFLDFLEKIA >gi|260196050|gb|ACQN01000017.1| GENE 39 39716 - 40339 600 207 aa, chain + ## HITS:1 COG:L0306 KEGG:ns NR:ns ## COG: L0306 COG2003 # Protein_GI_number: 15672989 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Lactococcus lactis # 20 206 29 224 226 116 36.0 3e-26 MQIADKDHYLLKTDQELLNEIFILLEEAGIKSFAELNNVLLNKKLENFGQIYDYLTSCQI DDELLSRTITLLKRLKAVRTRKLIQFVSSHEVGKYLIDRFLGVEQEQLVVIYLDNKNKVL GERLLFQGTVNRSVVHPRDIFRWAVFYNSVGILIAHNHPSGDANPSQKDIEFTKQINKAS DLMGINFLDHIIVADRSYLSFKEEQLI >gi|260196050|gb|ACQN01000017.1| GENE 40 40438 - 41442 1357 334 aa, chain + ## HITS:1 COG:lin1583 KEGG:ns NR:ns ## COG: lin1583 COG1077 # Protein_GI_number: 16800651 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Listeria innocua # 1 331 1 333 337 406 67.0 1e-113 MFGLGSKNIGIDLGTANTLVYMEGKGIVLREPSVVAKNTQTGEVISVGSEAKEMIGRTPG TIRAIRPMKDGVIADYDTTAAMLKYFMEKTVGNSKPAVMICVPSGVTEVEKRAVIDAARV AGAREAYVIEEPFAAAIGAGLPVMDPTGSMVVDIGGGTTDVATISLGGIVSSRSTRQAGD KFNSSISSYIHQKFNLLIGERTAEDIKIQIGSASVEKAKEIESMNIRGRDLITGLPKSVD VNAVDVAEAIQEVVQDIIVAIKETLEETSPEISADVIDHGIVLTGGGALLKNLSEVISEA TKVPVFIAQDPLDCVAIGTGESLKNIEVMRRAHK >gi|260196050|gb|ACQN01000017.1| GENE 41 41494 - 42351 933 285 aa, chain + ## HITS:1 COG:lin1582 KEGG:ns NR:ns ## COG: lin1582 COG1792 # Protein_GI_number: 16800650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Listeria innocua # 1 281 1 275 295 152 35.0 6e-37 MKKFLQNKKILVSFLTTLLVVIILGITVSLRSKRNSPLFFQKMGNDIISVASRVVNWPVS LASDGISNINSIINMQKENDHLKSQVSNLAQTKARNSSLEAENKQLKSALNLKNTLTTYT IVNASVISRSPDTWSDILIIDKGSSSGIKKNQAVMSGGGVIGRILEVNSATSKVELITTT DKSANRFSVEADAANGKKVHGIITVNSDDTNSLYFTQVVDSKKLKKGAKVYTSGLGGRSP KGLLVGTVAKTTRDSFGLSDLIEIKPAGSIGDASVVSVVERKVSE >gi|260196050|gb|ACQN01000017.1| GENE 42 42351 - 42896 622 181 aa, chain + ## HITS:1 COG:no KEGG:LJ0964 NR:ns ## KEGG: LJ0964 # Name: not_defined # Def: rod shape-determining protein MreD # Organism: L.johnsonii # Pathway: not_defined # 5 180 2 177 177 106 37.0 5e-22 MNSRSKLSRWYIAIAEFGALIIDGVASIYAHSLLGLSGVSASFWLVVIAVAACSLIDENN NNEIILAFFIGLIADIYYLGFIGPYTVGLTLVSWLCQKVTRILPDVFVVRVPVIVICYLL FDAFFWFILTIASTISISFSQVLWGMIANAILALILASLSYPLFNLLGREYPFAIKMNYY K >gi|260196050|gb|ACQN01000017.1| GENE 43 42939 - 43058 99 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MARKKKSKFQKLTIVMAVLMALITLLAILIPVLQGLNIF >gi|260196050|gb|ACQN01000017.1| GENE 44 43150 - 43479 240 109 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00820 NR:ns ## KEGG: LCRIS_00820 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 109 1 109 109 117 59.0 1e-25 MLMIILLPVLGFITAAIVNAVFPKAKFRGYDVLPFFFIAACQNISNFLKNPSFLPYGFLT YFVLVLVISISSAIKFKNIDSGKLIRKLWDYLTVCTIFWYIGLLFTIII >gi|260196050|gb|ACQN01000017.1| GENE 45 43481 - 43684 176 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|297205803|ref|ZP_06923198.1| ## NR: gi|297205803|ref|ZP_06923198.1| endoribonuclease L-PSP [Lactobacillus jensenii JV-V16] # 1 67 1 67 67 100 100.0 3e-20 MNMTVASLPSNNLPQFPTSYHNITNNCETFLTIIFLEYKNSAKSTFSAVKLSLLIVGILF LYLKFLY >gi|260196050|gb|ACQN01000017.1| GENE 46 43677 - 44108 544 143 aa, chain + ## HITS:1 COG:lin2148 KEGG:ns NR:ns ## COG: lin2148 COG2001 # Protein_GI_number: 16801214 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 138 1 138 143 177 57.0 4e-45 MFMGEYHHNLDAKGRLIIPAKFRNQMGDKIIFTRGMEGCIFGYSEEEWQKIEAKLAKLPL TKRNVRKFTRLFYSGAMESEFDKQGRVNLTATLKEHAELEKECVIVGVSNRIEIWSQKRW DDFTDDADENYDDIAEDLDDIEL >gi|260196050|gb|ACQN01000017.1| GENE 47 44105 - 45058 814 317 aa, chain + ## HITS:1 COG:SPy1666 KEGG:ns NR:ns ## COG: SPy1666 COG0275 # Protein_GI_number: 15675533 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Streptococcus pyogenes M1 GAS # 1 317 22 335 337 338 56.0 1e-92 MTTNFKHTSVLLRETIDNLNVKDEGLYVDATFGGGGHARYLLSKLNTGVLVGFDQDNYAI NAAKDNFSEYLSGNHQPQLIMVHDNFSHLTDNLNKLGIKDGIDGIYYDLGVSSPQFDQPD RGFSYRFDARLDMRMNQEQELDAYQVVNSYSQSQLADVLYQYGDEKFSRQIARKIVQRRQ QKPIETTFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLR PGGRISVITFQSHEDKIVKKIFKENSEVDVPRGIPIIPDNLKPKLKLVNRKPILATASEL ANNNRSHSAKLRVAEKL >gi|260196050|gb|ACQN01000017.1| GENE 48 45071 - 45445 412 124 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1208 NR:ns ## KEGG: LGAS_1208 # Name: not_defined # Def: protein required for the initiation of cell division # Organism: L.gasseri # Pathway: not_defined # 1 123 1 119 120 95 46.0 4e-19 MADSSARNLNYNYEPSRKARSTFETERRMSVDPNKVPFSRSEIFILIAGSIVTIAMAAML VFTSVAATSAQHQLANIQTELTSSQTDSSNLRQEIGELTSSSRMNKIAKQEGLSLIESNI RTVD >gi|260196050|gb|ACQN01000017.1| GENE 49 45448 - 47610 2305 720 aa, chain + ## HITS:1 COG:BS_pbpB KEGG:ns NR:ns ## COG: BS_pbpB COG0768 # Protein_GI_number: 16078580 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Bacillus subtilis # 7 720 2 713 716 480 40.0 1e-135 MKNSNNIKTTKTNVHSNRFQVGRVLQVIVALVFLIFLGRTLYISISKTVAGENLSARTAA LYKRNQVLKATRGTIYDRNGFTIAEDSHVYTIYAILDHSSINYKNKPEYVVNKDKTAEKL ATVLPLSKEQILKYLNPKTKAFQVQFGSGGSNLTIEQKQKIEKMKLPGIKFIESPSRLYP NGTFASHIVGLAQPVYNKKTKSTDLVGTMGLEAYYNKYLAGRDGYKESSVDASEYQLPNG TNAYQAAKNGDDIYLTLDSQLQNYLENLLTKVQSKYQPKALTAVVEDLRTGKVLAASQRP TFDAQTKKGLTDSYTDLLTQATYEPGSVFKILSFAAAINSGHYNPNELYKSGSLTLNGST IHDWNVTGWGSIPLYEAFPRSSNVGLSILEQKMGASTWRSYLNKFGITKKTGITLPGEQA GMIAFKSKLDQAVTSFGQGVNVNVWQMMQAYSILANKGQMVKPQLVEKIVSPTGKVVQNY KVQKVGKKVVSESTVKTVLQGMQDVVNKQYGTGTAYKIAGKSIAVKTGTAQIAGSSGYLT GNNNYIFSVIGVTPANNPHYAVYLTMKQPQKMTDPAETILASIFKPMMNRLILSSSVTKK ASASKEEVPNVVGKSVSNAKNDIEKVALSVEVLGSSDVVTQQTPATGQKLSAGSKVFVLT SGKISCADFTNWTVEEVKQYAALAGVSVKVSGSEDGKVKLQSIKAGTTLKNGQEITIKTK >gi|260196050|gb|ACQN01000017.1| GENE 50 47631 - 48590 1015 319 aa, chain + ## HITS:1 COG:lin2143 KEGG:ns NR:ns ## COG: lin2143 COG0472 # Protein_GI_number: 16801209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 1 317 5 321 324 261 48.0 1e-69 MLYSIYALVISMVITAIFLPWLIVFMHMHHEGQPIREEGPKAHLKKAGTPTMGGTVFVIA SVIATTLVLVWKQSFNNIAIILIIALLGHGLIGFLDDGLKIIWKNNLGLRAWQKLLLQIF IAIVLVLIASFDRFAFALRMPWGGALTGPVIFVLFTIFWLVGFSNAVNLSDGLDGLASGL SIVSFATYAYLAFKQENLAILVFCMSVIGGLIIFLIFNHKPAKIFMGDAGSLALGGSLAA IAILLNRPWSLLLVGLVFVCETASVMIQVTSFKLTHKRVFKMTPIHHHFELSGWSEWKVD IVFWLVQLIFSILYLIIWG >gi|260196050|gb|ACQN01000017.1| GENE 51 48596 - 49966 1792 456 aa, chain + ## HITS:1 COG:BH2567 KEGG:ns NR:ns ## COG: BH2567 COG0771 # Protein_GI_number: 15615130 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus halodurans # 1 455 1 448 450 388 47.0 1e-107 MKDIKTYQGKNVLVLGLGKSGFAVSELLLKLGAKITLNDKQDLTDNEHAQKLEKMGVRVI GGHHPVDLLEEEHFDFFVKNPGIPYENPMVQKASELKIPIITEPEIALSASEAPFVCVTG SNGKTTTVMLTSEIIDHHLAKSGHHAYAVGNIGVPISEVVQKATKDDVLVVEISSFQLLG VTDIKPKVAAIVDIYPTHLDYHKTMENYIAAKLNVTRFQTCDEYFIANFDQKEILSKEEA TTKAKIQTFSMNDHSASYFVGDEYLESQSEKIMKISDIKLPGRHNLQNSMVAIAISKLMG AENSDIQAVLSTFAGARHRLQYVTTINDVKVYNDSKSTNIEAATVAIKAFSEPEVLIGGG LDRGFTFDSLVPLLKKHVKAVVLYGETRYLLADAARKAGIKEIKIVNTLKEAVPVAYELT KPGDVLLLSPACASWDQFKTFEQRGDYFMEYIKELN >gi|260196050|gb|ACQN01000017.1| GENE 52 49969 - 51081 1262 370 aa, chain + ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 364 1 359 363 332 47.0 7e-91 MRVIFTGGGTGGHIYPILAIIERLKETGISNDDEILFVGTERGLESKIVPRAGINFKTIE IQGFSRKNLIKNIETIKLFMKATKKARKIISEFKPDVVLGTGGYVSGAIVYEAAKMGIPT LIHESNSVVGLANKFLGHYVDKICYTFDDAAKQFSEKKKLIQTGNPRSQQVLNLNLEKID LAQKWSLNPQMPTVLVFGGSRGALAINRAMESALSELSKKPYQVIWATGQYYYGSVKEKL AGKDIPKNLRIVPYIDNMPALLPQMSCVVSRSGATSLAEFTALGVPVVLIPSPNVTHNHQ MKNALDMEKAGAALVIPENDLNPNNFVSSIDHILLDSEYASKMSKASKKLGVPDSADQII TVMKALQANK >gi|260196050|gb|ACQN01000017.1| GENE 53 51112 - 51966 839 284 aa, chain + ## HITS:1 COG:lin2140 KEGG:ns NR:ns ## COG: lin2140 COG1589 # Protein_GI_number: 16801206 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Listeria innocua # 38 270 12 244 270 84 29.0 2e-16 MTNRRITKKDPKKDLDNFLDYKKNKNNITNRTNQKASDSLTNLNNERKQALRRRLGAIII ISILAILGLGIYVSSYTRLQKIIVVGAPELDATEVIKKSGIKAEDQLIDYWLGKNTYESK LKKYYPEIKSAKLKLAGLNQIKLDLQEYSTLAYVNQNGRYYKILNNKKIARQSLTESQLN KSLPIFVGYTSKSGLFTDLKALKAIPTKLRNQISLINGKSTRKSEIVLLMKDGNIIIGNT DTIAQKITYYPQIKSNLSSKSIIDLEIGAFSRPLTDSEKKNLGF >gi|260196050|gb|ACQN01000017.1| GENE 54 52048 - 53418 1264 456 aa, chain + ## HITS:1 COG:SP1667 KEGG:ns NR:ns ## COG: SP1667 COG0849 # Protein_GI_number: 15901502 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Streptococcus pneumoniae TIGR4 # 1 397 1 396 457 298 40.0 1e-80 MSNSSLIVGLDIGTDSVKAVVADASVNEIQVIGAVKEKNKGMRQGKIVDIDQTANAISSA LKNVEQKTNSKIYRVVTGIPVGMLQLETSTGLINIGEDGREVSDQDVKRVLELAIKQAVK SGREAIAFLPSRFLLDGKTDVDDPRKMIAHSLEVHGILLTAPTGDLHNIKKAIERAGYQN NFFIPTPLAIASVALDEGERTFGSVILDLGGGTTTATVIHENKIKYATIDLEGGEDVTKD ISVVLGTSKKDAEQIKLDYGSADPELTSSEDKFSVKTVGKSEQETVDENYLSQIIAARMD QILGRIGKGLASHDAFKLPGGVVITGGMTLLQGLQSAVEKHFEVKTRVYQPDEMGLRNPA YAAAYGVVNYVYNLNDIDLLVNGVIYGTSASHENPLAEFSENSINIFKRHAEVSENNTKE AYNDTIAPRVDREKDGANKSENSKKGIRGFFKNFFD >gi|260196050|gb|ACQN01000017.1| GENE 55 53433 - 54806 1603 457 aa, chain + ## HITS:1 COG:BH2558 KEGG:ns NR:ns ## COG: BH2558 COG0206 # Protein_GI_number: 15615121 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Bacillus halodurans # 3 327 2 326 382 363 68.0 1e-100 MDFQFDQDDNKNAVIKVIGVGGAGGNAVNRMIDEGVQGVSFIVANTDVQALNSNKAENKI QLGPKLTRGLGAGSHPEVGQKAAEESEQTIEEALKGADMIFITAGMGGGTGTGAAPVIAK VARETGALTVGVVTRPFTFEGPKRSKNAAAGIAQLKQYVDTLVIIANNRLLEMVDKKTPM MDAFKEADNVLRQGVQGISDLITSTDYVNLDFADIKTVMENQGSALMGIGRASGENRTVE ATKLAISSPLLEVSIDGAKQVLLNITGGPDLTLFEAQDASEIVSKAAGDDVDIIFGTSIN ANLGDEVVVTVIATGIDSKAEEEASKQLPGHHRTVSRPSVDIKPEIEVNQAPQPQNVETS DTVKAEPSQVAETLSEKPQVAEESHQKESMVNPIDVWNLDDNNNRREVKNQGVVNKKQDT FDTFNNDDQDSISQIETSADNGDNSSDIPFFRHRNQQ >gi|260196050|gb|ACQN01000017.1| GENE 56 54822 - 55283 580 153 aa, chain + ## HITS:1 COG:BS_ylmF KEGG:ns NR:ns ## COG: BS_ylmF COG1799 # Protein_GI_number: 16078603 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 50 150 46 145 149 97 47.0 1e-20 MAALEKISSFFGISDSSAEDEYAPEATSASSQLNEVEVPTEIADHLNNKGRNNVVSIKSG SVPQSKIVLYEPRVYSDAKEVAQNLLSNKAVIINFSRMDDDSARRIVDFITGTVYALNGE IQRVGDKIFLATPPKFETDGKITELVEKKDKLS >gi|260196050|gb|ACQN01000017.1| GENE 57 55283 - 55570 337 95 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00832 NR:ns ## KEGG: LCRIS_00832 # Name: yggT # Def: cell division membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 95 1 95 100 70 46.0 1e-11 MINFLLSTISVINWLLYIYTILIVLNAITSWLPFLYNSVVGRYLNKIVEPYVGLFRIGFL KTIAIKAGVDVSPVLAIFVIYIIQNLLTQLAFKLI >gi|260196050|gb|ACQN01000017.1| GENE 58 55614 - 56438 1149 274 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526426|ref|ZP_03956475.1| ribosomal protein S4e [Lactobacillus jensenii JV-V16] # 49 274 1 226 226 447 99 1e-124 MNENILLSEKIKKRAQFLRSQSDNDDISQLSGYLIQVCYGKEEILTNFLDPGARANLKEL AQDDFYVQEFGGYDRAEKCRAIIRNDWEYQDVRNFQLKLINITYNHKFATITHSQILGTL VGSGLNLSSLGDIITDGKGKWQFFVSEAMADFVCQEIKRIGKVAVSLNEVSLKQIVNIED DIQNTKIIVNSLRIDAILAALTKSSRNIVKQLIEKENIKLNWHKIDNSNIIISVNDVLSV RHYGRIEISNITNTRKGKYRLEANLWLSKKKRLY >gi|260196050|gb|ACQN01000017.1| GENE 59 56444 - 57139 830 231 aa, chain + ## HITS:1 COG:BH2546 KEGG:ns NR:ns ## COG: BH2546 COG3599 # Protein_GI_number: 15615109 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Bacillus halodurans # 1 151 6 148 165 70 31.0 3e-12 MDIHNKEFTPRGHKGYDRYEVDSFLDQIVDDYGDCLDNNVDLKNENVALKNKIKELESEV DRLDELRKTINDEVLKAQKDASELRQKAQEDAKKIVEDAKNQAASENQSLVYQNDTLKND YQRLKTQVADFRYKIRAKLQKQIDSLDDNTWQYYLDAATNVERIYPSDGGEPIPTASLPT VDNKGQSGVNLEHDKDADKVPLSTSQPENDQENTNDSDVTIVFPDDYKDHN >gi|260196050|gb|ACQN01000017.1| GENE 60 57356 - 60148 3203 930 aa, chain + ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 930 1 932 932 1186 60.0 0 MRIKDTLNLGKTKFPMRGNLPNREGEWQKAWEENKLYEQRLKLNEGKPRFDLHDGPPFAN GNIHMGHSLNKISKDIIVRYKNMSGFYAPFVPGWDTHGLPIEQQLAKQGVDRKTMDRAEY RELCRKYAMEQIDKQRTDFKRLGVMADWNHPYITLQPKFEAEEIRVFGKMFEKGYIYKGL KPVYWSPSSESTLAEAEVEYHDVKSPAIYVAFQVEDGKGILDNDTYMVIWTTTPWTIPVN VGITVNPKFEYSLIKVAGEERKFVIGTSQLEKVAEDLDWQDYEVVDTFKGTDFDRMTVKH PLYDKTSLVMNDTYVTAEDGTGLVHNATGFGEDDYNVGKKYGLPVYSPMDDQGRYTKDIP DPNLVGVFYDDANKMVTKQLEEKRALLKLSFFTHSYPHDWRTKKPVIYRATTQWFASVDA FRDQILAEIEKTNFTPSWGKTRLYNMIKDRGDWVISRQRAWGVPLPIFYAEDGTPIVSKE TIEHIAQIFEKEGSNAWYTHTAEELLPAGFKSEHSPNGKFKKETDILDVWFDSGSSHQGV LAARPELHYPADLYLEGSDQYRGWFNSSLITSVAVSGHAPYKSILSQGFVLDDKGHKMSK SLGNVISPNDVVKQMGAEIIRLWVASADTTSDVAVSKGILQQNAESYRKIRNTLRYMLAN TSDFDPKANRVAYKDLRSIDQYMEVLLNKLVKDCLAAYNKFDFTNVYKMVFKFISNELSA FYLDFAKDVLYIEGEDSLPRRAMQTVIYDALVKITKVMTPILPHTMEEAWSYLKEDREYV QLSDMPQVESFDNEAELLQNWSEFMKFRDDVLKALEEARNAKLIGKSFEACVDVYPTEHT KAMFNKLNADMRQILIVSKLNVLDSEAPDNAEEFETAKLVVKHAEGTVCDRCRMTRTDVG NNANLPKLCGRCAEIVEENFADAVKEGFED >gi|260196050|gb|ACQN01000017.1| GENE 61 60148 - 60369 301 73 aa, chain + ## HITS:1 COG:XF2352 KEGG:ns NR:ns ## COG: XF2352 COG1278 # Protein_GI_number: 15838943 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Xylella fastidiosa 9a5c # 1 64 1 64 67 57 45.0 7e-09 MRTGTVKQFDSAAGFGFIDDDLTKASYFVFYTAIKEAGYKSLEIGQRVRYQLAQGKKGLQ CINVYIDNGEGGY >gi|260196050|gb|ACQN01000017.1| GENE 62 60369 - 60935 755 188 aa, chain + ## HITS:1 COG:BS_yqkG KEGG:ns NR:ns ## COG: BS_yqkG COG0494 # Protein_GI_number: 16079418 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus subtilis # 3 172 4 172 185 132 43.0 4e-31 MDLREQEIASEQIFKGQIVDLSVRTITLPNGKTATREIVKHRPAAAAMAINSENKMLLVE QWREPIKDLTLEIPAGLIDETDASPLDAMKRELNEEGGLKAEYWEKVSEFYSSVGFCDEK MYLFYCDTLTRLEDKRNLDEDEFLTTHWYSLSELKQLLSEGKIVDAKTIYAITVWENMIL SGSKENND >gi|260196050|gb|ACQN01000017.1| GENE 63 60928 - 61206 241 92 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850941|ref|ZP_05556330.1| ## NR: gi|256850941|ref|ZP_05556330.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 74 1 74 92 118 100.0 1e-25 MTEKRADYQRKHNKSKSFSLLTDFFRKDKKSQEFNKEDYEAGINQDVNSPEYQRNPELTR EEKIDRLKKRLNIAIGIVLGLLVLVFVALFKL >gi|260196050|gb|ACQN01000017.1| GENE 64 61220 - 61909 589 229 aa, chain + ## HITS:1 COG:SP0991 KEGG:ns NR:ns ## COG: SP0991 COG0775 # Protein_GI_number: 15900866 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Streptococcus pneumoniae TIGR4 # 1 228 1 227 230 150 38.0 2e-36 MKIALIVPMPEEAEFYYQHFHDREVKMFGCTKFEHFSVNENEIYLGLSGIGKVNAAMNLS NLLARVDIDLIIMTGSAGSLKPEIKKKDVIVVNSFAYHDAHNTAAGDYVEGQIPREPARF DLQSTERAQFIDFLKTRGFNFKEGLVVTGDSFIASEAAKTVIKANFPEAVGVEMEGASFA QVAYHFNKPLIALRAISDNGDEDANESFEEFVKEAGQKAADLIISYLKR >gi|260196050|gb|ACQN01000017.1| GENE 65 61928 - 63091 1466 387 aa, chain + ## HITS:1 COG:BH1260 KEGG:ns NR:ns ## COG: BH1260 COG1104 # Protein_GI_number: 15613823 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Bacillus halodurans # 6 385 4 379 386 299 42.0 6e-81 MDRKLVYLDNAATTPVSEAVVAEMTKQLAENFGNPSSTHAFGRKALEVVDQARHRIAKFI NARNDDEIIFTSGGSESNNTVLRGIAKEHNYDCQIITTAIEHPSILNTAKELQAEGVEVI YLPVDESGHISLADLKAALSAKTALVSTMAVNNEVGTINDLAQIGQIVHEYNPKICFHVD AVQGLGNIELDVQAMQIDFMSTSAHKINGPKYIGFLYERTGLSLPSLITGGEQEKKRRAG TTDAPSIAGFGEAIKLLQAVDRVAEQTRYQEFQQIVLDALDANHIKYEINGSLTGLVSHH TLNLHLIGIGTYVMLTNLDLAGFAVSGGSACTAGSLTPSHVLTAMYGADSPRIEESIRIS FGRLTKKAEVEAFAQALVKMALRLQKV >gi|260196050|gb|ACQN01000017.1| GENE 66 63143 - 63478 455 111 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1219 NR:ns ## KEGG: FI9785_1219 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 110 1 110 111 164 76.0 1e-39 MANTVIINGDTRKFTINENVKRYSLIDVGFVKSPKGNFIYEHPLYNESPYNAPTKLKMTI NQDLDHLTMVITDKNGLQKVNIFKNQQLKPTVELLNFILKDLIEREIIKPL >gi|260196050|gb|ACQN01000017.1| GENE 67 63492 - 64619 1536 375 aa, chain + ## HITS:1 COG:L52034 KEGG:ns NR:ns ## COG: L52034 COG0482 # Protein_GI_number: 15672819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Lactococcus lactis # 5 373 15 382 384 494 66.0 1e-139 MVDNSKIRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDDTDDAGVCTATEDYEDVK RVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSLD ADYIAMGHYAKTVKDKNGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLANLTKPQVR EIAERAGLATAKKKDSTGICFIGERNFKKFLSEFLPAKPGKMVTPDGNVVGNHSGLMYYT IGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGYDSPRLYATSLKASGMSFYTGNPD HDVEFDCTAKFRYRQADVAVHVKYHAADKTCDVYFDEPARAVTPGQALVLYKGEECLGGG NIDAAYQEEKQLQLV >gi|260196050|gb|ACQN01000017.1| GENE 68 64769 - 73354 9526 2861 aa, chain + ## HITS:1 COG:no KEGG:LJ0382 NR:ns ## KEGG: LJ0382 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 44 1077 132 1179 3619 158 23.0 3e-36 MGVSRNNFKNKMKQMAEQKPRFGFRKFSVGLASALIATVFYFGAMPSSVKADVQAETETD TKTVSQIDQQNKKTNNQNSSKTANMSNQQVASMHATTTTQNENGGVDQAASSTTNRDESS VKQEAVSADKTKGEAKDAKSISTTDQTTAAKKLEQTKLNSVATTNGVSSNDTQEQNGVYF DNNTFDGKTSKHTLNISYSAQAGDVISVHIPFKGIWGQQDGDTQLPPTVASVNVDSNNQG ATIKITMNATSTFHVSFHLYDLQTTNVTGIDPSLYNITQADVGPHTYQVTWEVNGKEQTP ADFVYDVEPSLSINPVKRVGGTNAVKMGTDHTYSVDLSNQIGINNYNRVPKDFNAGSVIT IPVASNFELNKAATDALNTLNDGTEITQDGVGKDIIITIPEGKGVDLNQTSVAPYYFVGH FNGDQPDQDTKAYTPTGAVISATVNYSDTYSKTASNGTFVDILLGKTTEDEVKKAASKPA EQQSTQEKEQIKSIYGDVTTTSTPKRDSQVLMLDHENDDLIGSFGYSVNSSDSFTNGSAQ FSFTFSSNQHVYKVTTPESAGMFLSGVKTYQYRIVRADNTVQTGQVNANEDIVNTDSSPI VSLTFTPDQLLTGANVTGDQVFKFYGKITTASGSQAGDKLDSSFSLNGTVDNHNYTSSSE LHQTVGQQTSTLQLQSTGTMTVAPGGQIGYLYTTLGNSSVTKLGTVYEPTIYYVMPKGIS AQKLSGLYVQNFQGVVPKISEFKNSDGSYTVKVDYKGTGFTYDFANQEKDDEGQPKLLGF WIQALPDAAKGSYDIKAYIDTTTPMDKTTNPASSDDVKKLLGLTNDNQLYDLGSFTAKVG LGDSETGVTLSAGPDGIWRQRVQATNKKGENLQFAYSVINTSSKELSNNHIILSLPSGQG GYVGSQHPDKYGRTMTFRLTGPIQLPDDLKNAEVKYSTQDFNFNGNMSDISDLSSFVSAA QVTDWNIIKTIEIYLPTIAANSQSGRIILNGQDTTAEGDFNGIGFLANGLYSDSMAPQIV TQINSKANPNEQIAATIRINRLVKVPVKLVKADGTKIEIPSMEKEYNPNDSSLIISQDYP QANIPADLITANVQPGYSINGPVFTNGSGSNLSWGVTVSTTGGQEIDFYVESKKITVSGK TPDGPKTPDTPLPDNPNMNYPEHVDKQALYKEVTRTINVYNKDKQLVGSKTETLKLYRTA TVNEATGKVEEYSKWQMVTPTTSGWDKYLFGQVQSGDLIKVEVTDEDGRKLTTDPVSGET IPATEMSADNIQSPIIKQTDSEGNSVYGVKEVSVDDLINTINQKQTAGDTADITVNEIVN VSVGPAQVTLHVYWVDTQTPDTSSDSKDGFKLVQKQDVTDYPGTKATLDKLPENYDYADG QDQVTEITNNGQDVVIRLKHKISTNTETKTITRTINITKPGEETKTTKQSVTFSKTDSTD LVTNQPTEGKWTRTSDSDQFTGLTEDDLKVDHYTTKISKNGQADDSATAIPTETVTAGSS DETFDVTYAPIKKSETVYWVDTETKDSAGQEGYKVVASELVSEQLEGSIYQLTKSTPENY VLADGQADIKSVTVDGNNVIIKLKHRTNKVPETRTVTRVVYVTKPNATKASRVVNTAIEF TRDNVVDAVNGQIEHGDWDPDSAVINGYTPTPQDHYKVVIHKGTPDGETVQSIDQINNAT GDTPSDIYYVTYNPINKSETVYWLDTETQDPAGQKGLKVVQSEDTPSQIEDSSYTLTKKT PDNYVLADGQAPVTSVTVDGNNVYIMLKHGTTQGTEETKTVNRTIYEIKPDETEPTVKYN KTLTFTRTPTVDAVTPTKVVNEGTWVAKDNDTSWTAVTPDEVPHYKAVIHEGSADGNVVD SIAAKTDVDADTPNETYYVTYDPINKSEVVYWLDTETQDPAGQKGLKVVQSEDTPSQIED SSYTLTKKTPTNYVLADDQVDIKSVTVDGNNVYIMLKHGTTQGTKETKTLTRIVYVTKPG ENEPTKKYDKTITFTRTPTVDAVDHTKVIDSGTWTLESGSWDAFTPDKVDHYTPVIHKDS ADGQEVNSIIAKTNVNADTPNETYYVTYNPIESSETIYWVDTQTPDTSDKGYGGYKVIQS ENAGGQEGSTYTIKSKTPEDGYIPVGEVPTTVVLDGNDVIIKMKHGTKDGEKETKTVKRT VYAINPGETEPTKVFEKSVEFSRTPTLDAVNGDKLSDGTWTPEKGTLAGYTPDDQPNYTA VIHKDTATGQVVESIPENDDITINSANEVYYVTYTVNAHSLTVTVHDNDIDTDLDDYGFK GEGDPNTDTGYDWNKVKQILQNKGYKIVDDQTIPTTYGTSDATYTIHVEHEVVPVGPDNP EKPGTPINPNDPEGPKWPSEDQYKKAYTFTLHFLDKDGKVLHASITKSVDWTRTVYVDKT NGQIVKDPRTTDWKASSENYDAIDIPQIDGYVANSTTKKGLKVENDKVTAAANEQANSED DLVYTVVQHSLTVTVHDNDTDTDLTYYGFSGKGDPNTDTGYDWNKVKKNLQNKGYKIVND QTIPTTYGTSDATYTINVQHGTKAGDTETKTVTRTVNITKPGEKTVSTTEKVTFNKTDSI DLVTGKTVKEGTWTSDKKGFDATNVELLDGFKLKITETVDGQTHDVTSIPAEEVTENSQD EIFDIIYLPTGKSLEPLVSREVTRTVTITKPGEKPSTKTQTVTFSGSQNPDGTITWDNDP KVENKFNAISVDSVDGYKAVIKNSDGKVVQSIDDENLNPATAKDEHFTVTYEKIATPAPE PSPAPTPEPTPTSNPKPAANTHPENVKPEIHPSLTKTNVVKGNFKSAKSAARRINKLNSA TKAEKLPQTGESKTNASLLGLLGLGMSMALGLVSRKKKEDK >gi|260196050|gb|ACQN01000017.1| GENE 69 73451 - 73759 434 102 aa, chain - ## HITS:1 COG:L178933 KEGG:ns NR:ns ## COG: L178933 COG0599 # Protein_GI_number: 15673518 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Lactococcus lactis # 1 101 1 102 102 149 74.0 1e-36 MVKQTAGRDQLGDFAPEFAHLNDDVLFGEVWSDEKLSQRDRSFATVTALISMGAFEQLPY HMQKAKENGISQAEISTLITHLAFYVGWPKAWSAFNIAKKIY >gi|260196050|gb|ACQN01000017.1| GENE 70 73771 - 74169 475 132 aa, chain - ## HITS:1 COG:L178204 KEGG:ns NR:ns ## COG: L178204 COG1917 # Protein_GI_number: 15673516 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Lactococcus lactis # 7 131 11 133 133 147 57.0 7e-36 MKNDKNIFGIGQENVDYAQYFDGKSFLNGLISPQDNIPFSVANVTFEPGCRNHWHAHTDG FQILLATSGEGWYQEWGKKPQKLLPGDVVVVKQGIKHWHGAAKNSSFSHLAITQGPTEWY EPLSKNEYDNLD >gi|260196050|gb|ACQN01000017.1| GENE 71 74273 - 75160 840 295 aa, chain + ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 290 1 287 291 152 31.0 9e-37 MDTRVLRYFLTVAQTGNITEAAKKLHITQPTLSRQLQKLEEDLGQELLDRTQKGHFGLTN AGIILARKSENLLQIWDDISEEVKNSGPDISGKLKIGLVESQCSIIVERALKQLQILYPK LQFELYSAYSDDLKNALDMMQIDCAILLEPVESTKYFQKQLPIYEQWGLIVGKKHPWSKK RLISVSELKDTNLIIPKRSIINQDLEASWGIKMNLENIKGFVNLSSNISWLLETGEYATL GIDGVLSVRPNPNLVFVPLNIEKNSGHVLVWRKNSQTSAAMQAFFDMLEEKIKQI >gi|260196050|gb|ACQN01000017.1| GENE 72 75179 - 75838 754 219 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 208 1 204 206 156 41.0 2e-38 MQIYFVRHGKTEWNLASKFQGGHGDSPLLPESYEDIKKLGNYLKGTKFRGIYASPLKRAF DTAQGVQQSMGISLPVRVEERLREFNLGNLEGMKFEEAEKKYPKEIDDFWNHADLYDPSA IHGETYPEVIARGKDFAQEMAKLYPNKDDKILAVSHGGALCAIMGGLLGYPLSEIRKHGG LSNTSLTILETDDEGKTFKKVVWNETDYLGRKLGATDSL >gi|260196050|gb|ACQN01000017.1| GENE 73 75838 - 76479 674 213 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1187 NR:ns ## KEGG: LGAS_1187 # Name: not_defined # Def: TPR repeat-containing protein # Organism: L.gasseri # Pathway: not_defined # 1 208 1 208 214 211 52.0 1e-53 MSKKTVQLYQQGKIQTAIQELIKDIDSDPKNANNYLELSTYLLEQGAIDQAKKLLVQAKG LVKKPQDMDYNLAICYYMEGDFDRALALLDTIPNNDETYYQKALVFHKLGNPQKALAFAM SVSKTDNDLFELLGDIWLSLGDFAKARENYMKISKDARSGKLNFLIGVTLFGSSRQEAEQ YFNLAKQLDPDYYQSAKKQYDSLLKVIKQGKEK >gi|260196050|gb|ACQN01000017.1| GENE 74 76479 - 78833 2224 784 aa, chain + ## HITS:1 COG:lin1544 KEGG:ns NR:ns ## COG: lin1544 COG0507 # Protein_GI_number: 16800612 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Listeria innocua # 6 783 21 795 798 469 37.0 1e-131 MVEFTGRLSGIIFENNEDMFKILDVEIVGGLAGYDQDDIRVTGSFGDVTINSEYQFSGEL VVHKKFGLQFKAESYRQVMPHEEGSLTKYLSGDKFPGIGRKTAQSIIDQLGLNALQVLKE NPNKLDQLSLTQKQKDSLLSGLNSMDSYAEISLKLSQYGLRKNVINRVYHLYHGDSIKRL EKDPYAIINEVSGYGFKQADYIGEQLGIPFNDFRRISGGIYQVLLNKLQEQGDTFVELKF LLTEVSELTDIPQFDSIAEAVNDLQRAGKVIVKDDVISLQNIFETEQIIAQNLARLNENK CENFTDEKIAQIIDECEKHLKIKYDDTQKSAIKNALNHPLSLLTGGPGTGKTTIINGILY CLRRLEEIPAASLYSEDPPFILAAPTGRAAKRMSETTGVEAKTIHRLLGLGINNSNNDDE IELNQINGEILIIDEMSMVDMFLFKQLLSSIVGTKRVVFVGDKDQLPSVGPGNVFGDMIT AAAFPVTKLTTIHRQGDDSSIITLAHSINEDQNTNLLFQKTKNYSFIPCQPAQVGQAIEQ IVNYAVKKGFARDDIQVLSAMYHGTSGITNLNNLLQKILNPKEENSKFVESHDEKFMIGD RVLQLQNNPEKDIYNGQIGKVIGINENKSDELLVCNFDDREVKFSRKDLLDLTRAYAITI HKSQGSEFPLVILVLTMQNFVMLRRNLLYTAVTRAAKNLVLVGEQKAFLMATNTPGNNRK TGLAKKIVSLMPQLEQEKDQQEDNASNIEKAEDEGPKILTKEAIYSGKIDPMIGMQGIKL EKLN >gi|260196050|gb|ACQN01000017.1| GENE 75 78941 - 80623 1703 560 aa, chain - ## HITS:1 COG:SPy1876 KEGG:ns NR:ns ## COG: SPy1876 COG0595 # Protein_GI_number: 15675695 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 2 557 4 555 560 705 61.0 0 MVRIKKNEVAVFAIGGLGEIGKNMYCVQYQDEIIIMDCGIKFPEDDLLGINYVISDYSYL IKNRKKIKALVVSHGHEDHIGGIPFLLEKIPEIPVYATPFALALIKGKLDEHGILKTTEL HEEYEDTVLTFDKLSVTFFRTTHSIPDTLGIAVHTPLGAVIFTGDFKFDLTPVMNQPAPD FQRMAKLGDEGVLALLSDSTNAEVSAFTKSERFVAKSLNNIIKGIDGRIIFATFASNLYR VSTAVEAAIETGRKIAIFGRSMENGIQNGIDLGYLNVPKDLIVDANEINRLKPNEAMILC TGSQGEPLAALSRIADGTHRQISIQPGDTVIFSSNPIPGNTLSVNHLINKLMEAGANVIH GKVNNVHTSGHGGQEELKMMVRLAKPKYMIPVHGEYRMQVIHTHLAQDAGVPKENTFVLS NGEVVAFSPEGSRIAGHIPAGDVFVDTSGTADVGNVVVRDRQILSEEGLVVAVATVDSKH QRVLAGPDILSRGFVYMRESQDLISQAQKNVYHVLRTQMAKKPRPSENDIRKAIIANLQD FLYARTERRPLILPMIIEKK >gi|260196050|gb|ACQN01000017.1| GENE 76 80627 - 80851 350 74 aa, chain - ## HITS:1 COG:SPy1875 KEGG:ns NR:ns ## COG: SPy1875 COG5503 # Protein_GI_number: 15675694 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 76 76 61 51.0 4e-10 MIYKVLYQDNKIVNPRRETTKTLFLEADSIGQARMMVEDNTPYNVELIQELTGNSLAYEK EHADFKLTTFDTDK >gi|260196050|gb|ACQN01000017.1| GENE 77 81030 - 81584 634 184 aa, chain - ## HITS:1 COG:SP1456 KEGG:ns NR:ns ## COG: SP1456 COG0242 # Protein_GI_number: 15901306 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 183 13 202 203 187 51.0 7e-48 MILMKDIVRDGDPVLRRVADQLTFPLSDHYQKLADDMMEYLINSQDPKIAEKHQLRAGVG LAAPQVGEGVQMASLLVPNDKGEIIFKETFVNPKIISESVRQVCLSEGEGCLSVDKVIDG YVPRPNKLTIKYFTVDGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRINKKDPFALKDDT LVIS >gi|260196050|gb|ACQN01000017.1| GENE 78 81819 - 83663 2319 614 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 6 610 5 609 613 857 70.0 0 MSEQRREDIRNIAIIAHVDHGKTTLVNQLLKQSDTLPEHINLEDRAMDSNDIERERGITI LSKNTAVKYHDTTINILDTPGHADFGGEVERIMHMVDGALLLVDAYEGTMPQTRFVLKKA LEAGVKPIVVINKIDRPGARPAEVLDEVLELFIELGANDEQLDFPVVYASALNGTSSYDE DLSTQKETMDPIFETIIKNIPAPVENSDQPLQFQITMLDWDDYVGRIGVGRVYRGKIKVG DQVTVMKIDGTTQNFRVTKLFGFFGLKRNEIKEAKAGDIIAISGINDIFVGETIASAENP EALPPLHIDPPTLQMDFVANDSPFAGREGDQVTPKKLEDRLMKQTRTDVSLKVEPTDQIN SWTVSGRGELHLSILVEELRREGFEMQLSRPKVIYREIDGQMCEPFEAVQVDTPDEYVGS VIDSLSQRKGEMKNMESTGNGQTRLEFLVPSRGLIGYNNEFMSQTAGYGILNHTFEAYKP VVKNWEPGRRNGALVSINQGQSTTYSLQSVEQRGILFIGAGVEVYEGMIVGQSSRERDIA VNVTKGKNLTNTRAAGKDHSASIKTPKTLTLEEAIEFLNDDEYCEVTPQSIRLRKKILNT NERQKFDKKKNRQN >gi|260196050|gb|ACQN01000017.1| GENE 79 83771 - 84964 1401 397 aa, chain + ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 388 11 405 434 228 37.0 2e-59 MRPDKQKFLYLDYKILLPYLILCVVGIVMVYSASSDILLVNGFSPTVYGVKQFIYFIIAV IFLGYPAFNTKMKKIRSWGFIMSYLGLSVFLLLILLAMKIIGGARFAVNGAVGWINLGFV SIQPLEIAKLALILYLAKILDKRANRLVAGNIWHSLSNPTIIAFAIMALVIVEPDFGGTA ILFMIVMVLYAVSGIRAGLVLTWMFILLGLVIGFVSLIIIWNPKFLQNSYQFQRLLAFAH PFQLEKTSGAQLVNSYYAIHNGGLFGVGLGNSMQKRGYLPEPYTDFIMSIISEELGSIGA CLILGLLFYLMWRIMEVGVHAQSQFNALVCFGVTTIIFTETLFNIGAVIGLLPITGVTLP FISYGGSSMFVLTAGVGLVLNISAEEKRTIMMERSVQ >gi|260196050|gb|ACQN01000017.1| GENE 80 84961 - 85293 241 110 aa, chain + ## HITS:1 COG:no KEGG:lhv_0884 NR:ns ## KEGG: lhv_0884 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 107 1 107 114 92 46.0 4e-18 MSYNQDLKNTNIPARVAIIVFLNQAQDQFKLRQFGDIVYFSKRKKYCLIYVNQTGARELT IKLNKLHFVKKAEISPTSELNFSREHEEGQINKLATEAEQILEENEEYKQ >gi|260196050|gb|ACQN01000017.1| GENE 81 85290 - 85841 380 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 180 13 193 199 150 42 2e-35 MRIIAGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQFFNGGAVLDLYGGSGALAIEAV SRGFDHAVITDINYAAVQIIKKNVALTHEEEKFEVFKMSDKVALKFLNEHDYHFDIVFLD PPYAKQKITKIMAEIDKLNLLNSKAILVCETDDDTKLEDVNGFTLIKEHHLGKTIVRIYQ RDN >gi|260196050|gb|ACQN01000017.1| GENE 82 85843 - 86340 323 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 5 165 7 164 164 129 42 7e-29 MVKAIFPGSFDPITNGHLETIKKASQSFDEVVVVIMTNTSKKYLFSAKERAELVEEAIAD LKLANVSVLTRPAALTVDVAKELQTNIIIRGLRNSADFLYEQQINAMNKKLNPAIETVYF MTSSDNSFVASSMIKEIAKFGGDVSQFLPVKAALALKRVLASHEK >gi|260196050|gb|ACQN01000017.1| GENE 83 86330 - 87361 408 343 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 10 338 12 343 350 161 30 1e-38 MKNKKKLNIVVATLLLLVLVYLGLSWPTNYYIEAPGDANSVSQFVSSKGKTASKNLLMVT VSERQASLGDYLWSYTNPFETRISQKDLLGNQNTSQYMQLQEWYMETSQNNAIYYAAKVA GKTPKKEFLGVYVMGLATNSKFKGKLEIGDIITAVDGQHFKSTKSLMDYIQKQKISQKIT ITVQRNNKSINYTGKTIPLATDKSKAAIGIQLVERSQVITDPQIKINAGSIGGPSAGLMF SLASYQLFTGHDLTHGVKVAGTGTIDDDGNVGMIGGVDKKVVAADKAGAKVFFAPSQQLP GYKKNETNYAVAVKTAKQIHSKMKIVPVATFNDALNYLKKIQK >gi|260196050|gb|ACQN01000017.1| GENE 84 87440 - 88090 481 216 aa, chain + ## HITS:1 COG:SP0954 KEGG:ns NR:ns ## COG: SP0954 COG1555 # Protein_GI_number: 15900831 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 10 212 8 211 216 125 39.0 6e-29 MNFEEFKDWIIKYKVWVIVSLLGIGILIFWKFNSNSQDELVSINSTSATSVSQSNSLSSS AASNISASKNDKVTCDISGAVKNSGIYTLKAGSRVADLIRAAGGETAEADLSSVNRAILL KDQDKVYIPVKGENSPLDTTASQTSSTTSNNSGEKIHLNSATIADLQKLNGVGQKKAEQI IAYREQNGPFKSVDDLTKVSGIGEKTLAGFKDQLEL >gi|260196050|gb|ACQN01000017.1| GENE 85 88059 - 90311 1000 750 aa, chain + ## HITS:1 COG:SPy1408_2 KEGG:ns NR:ns ## COG: SPy1408_2 COG2333 # Protein_GI_number: 15675328 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Streptococcus pyogenes M1 GAS # 450 747 1 297 299 210 38.0 9e-54 MQALKINLNYSKRPGFYLLVAFLLISFSFLFLEAKTYWQVGVAIAFCLFFALLLIKKFKK TKLVLTIGMFLFGLRLYQSLQLYSYQGQVITIYPDQMKVNKDYISGIGHFKSGRILLSFK SSSFIEAALKQGQKVQLIDIKYEIGEIEQAHNFGEINYRHYYVSQGIKEKIRIQNYQIRN TNYNFMDFYHYLRFKLEMYFASFPRLLGFFASELVLGENNSDDNQRILDNYRNLGVIHLL SISGLHVGIYTFVISTVCYYLKVTEDESFAIICFCLLLGILLCAGQAGFVRSCLTYFLGG LLKKKAFRISNSDLLGLTAIVHLLITPRLFMNIGAILSYVLVLGLKIVKSDSIFKQGVLL NLILTPLLLFNFYQVNVLTVVFNILIVPYFNFVVMPLTFINIFLFNNFLVVSKLFEKILE IGETIINNFAEANIGMVTFGKISWWQCLFLLIISLGYLIFRLEKFKLKLPAITLIIAYLL IFISIHFPLQGQVTFIDVGQGDSILITTPIFRKSYLIDTGGKVVFGNSNQKRRPQVEQII LPFLKAQGIDHLDGVFLSHQDADHVGDLGPLLDKIKVDKLYMAQGLMNNPAFLKRITGKV HKSQIKELLAGDRINEAIKFDIVYPYQAGLGKNEDSLSLTFQVNNKRWLFTGDLDQAGEE IIAQKTPMKVNYFKLGHHGSKTSTSEHFLQIIHPDLVFISAGRNNRYHHPNQETLVKLDK MAIPYLSTQRYGSISYRYGFGKGHFETFLR >gi|260196050|gb|ACQN01000017.1| GENE 86 90325 - 91311 816 328 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 18 286 20 292 347 102 27.0 7e-22 MLISLFKNSNVQNKNLLIYGEDAFLNDYLIRDYLASSDFAGLDLQRVDCENDGLGELLAS LTEASLFSQQKIIWIKNPIFLTGKSPKKIQADVEKLEKVFANLNLSDDIVIIQANYANLD KRKKITKLSLSAFNSVAVQFKPYEISGIIKAIIKDEGYSISQSTLHLLLERSDQVMDTVL SNYLKLKLIADDNKKITLEAVQNNVDLSLAQNIFEILSSAFKKNYQEAIERLEDQLREGQ NPVRILAVFENQLEVILSAKILLARRRSEMDVGKELGIHPYRVKLARQTQASIPKIKKLL LEAIKLDQGYKNGTYQGDEFIKMFLLAI >gi|260196050|gb|ACQN01000017.1| GENE 87 91363 - 91614 396 83 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526394|ref|ZP_03956443.1| 30S ribosomal protein S20 [Lactobacillus jensenii JV-V16] # 1 83 1 83 83 157 100 3e-37 MPQIKSAIKRVKTQANANKRRAAQLSELRTAVKKFKVAQAAGAENASDLHKAAARALDKA ASKGLIHKNKANRDKSRLAKLAK >gi|260196050|gb|ACQN01000017.1| GENE 88 91821 - 92090 453 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526393|ref|ZP_03956442.1| 30S ribosomal protein S15 [Lactobacillus jensenii JV-V16] # 1 89 1 89 89 179 100 6e-44 MSISKARKNELIKEYATHEGDTGSVEVQVAVLTEDINNLNAHLKAHKQDHHSYVGLLKKI GHRRNLLRYLAENDIERYRTLIKKLGLRR >gi|260196050|gb|ACQN01000017.1| GENE 89 92230 - 93969 2122 579 aa, chain + ## HITS:1 COG:SPy1020 KEGG:ns NR:ns ## COG: SPy1020 COG0595 # Protein_GI_number: 15675021 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 553 3 552 553 578 52.0 1e-165 MADFNIKIMIVSGVREQGKDMFAVQVNDEIFVLDAGLKYPDSSLFGIDVVIPDMEFFDKY SDKIAGIFLTHGHADSIGALPYILRRHDINIFGSELTIELAKLEVQRENHRRKNHLFHVI DAETEIDFRNASVSFFHTTHSIPGSLGIVVHTPAGGVVYTGDFKFDPSASAQYRTDMDRL AEIATKGVLALLSDSSNAEADFPNASEKEIGDYVSEVFSNATGRIIVAAKASNFTRLQQV FDAAKKNNRKVLLTGRGVNKIVQIALKLGYLQADSKLFVHSKELKKYKDNQLVVLETGRM GEPLQSLQKMATNRHRMVSIHQGDLVFIATTPSHAVETMVAQTSDMVYRAGGTVTQLAYA KHTSGHATGRDLQLLISTLKPKFLIPVIGEYRLLEIHRNLAIATGMKPKDIYITKNGDCL SLQKGRFYLTDPVPGEDTMIDGSGIGDVGNIVLRDREILSDDGIFIAVATIDRKKKKIIA EPKVSSRGFVYIKANKELMNESREVIKKAITTNFEHKKFDWSELKTDVRNSLEKFLYKQT NRRPVVLPVIMEVNQNRHRAMARKKTEHEPRSKKAENND >gi|260196050|gb|ACQN01000017.1| GENE 90 93962 - 94795 802 277 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00864 NR:ns ## KEGG: LCRIS_00864 # Name: not_defined # Def: BS_ysoA-like protein with TPR repeats # Organism: L.crispatus # Pathway: not_defined # 1 273 1 273 277 235 48.0 1e-60 MTNLSQKNLINLANESIEKKDLTQAEEYLEEALNLAYDEKIAKSLIKVYLSDNKEGQAYD LVKEEPDLFSDLEIFTLYLETLVKNKFYIEFLQLKILLDNPKLKEVSPETLEKQIEIMRA FKKRKVIRQQDYQSLFKLDLNNFVNFSKSILLDPSQSFALRLAICEDLVKLRIDENIPII VLNKMTDFNPSLTQLLAKNTVYQEIISSIGDRLSKNPSMLPTVLSETNLLLGTIYPKIEE FVDEPDSFSKDLVNFVLDRNGGEHQEILTKIYQNISH >gi|260196050|gb|ACQN01000017.1| GENE 91 94970 - 96160 1368 396 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 4 396 3 407 407 531 65 1e-150 MAEKEHYERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKQGLAQASDYSQIDAAPEEKER GITINTAHVEYETENRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREH ILLARQVGVEYIVVFLNKCDLVDDPELIDLVEMEVRDLLSEYDYPGDDVPVIRGSALKAL QGDPEQEKVILELMKTVDEYIPTPERQTDKPFLMPVEDVFTITGRGTVASGRIDRGQVKV GDEVEIVGLTDDVKKSVVTGLEMFHKTLDLGEAGDNVGVLLRGVDRDEVVRGQVLAQPGS IQTHKKFKGQVYVLKKDEGGRHTPFFSDYRPQFYFHTTDVTGAIELPEGTEMVMPGDNTE FTVELIKPVAVEKGTKFTIREGGRTVGAGQVTEILD >gi|260196050|gb|ACQN01000017.1| GENE 92 96362 - 97675 1900 437 aa, chain + ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 424 427 411 55.0 1e-114 MSAKWEKTGKTTGELTFEISQEEIKLGLDQAFNRVKKNLRVPGFRKGHVSRVIFNQYYGE EALYEDALNLVLPNAYTAAVKEAKIEAVGQPKIEPVSMDKDKAWTMKATVSVKPEVELGD YKGIEVPKQNTRVYQKDIDAELEKKREQNAELVLKDDKAAKGDTVTIDYKGTIDGKAFDG GSAENYSLELGSNTFIPGFEDQLEGHKAGDEVDVVVTFPEDYGAKDLAGKEAHFATKLHE VKSKELPKLDDEFAKDVDDSVETLDELKEKIKKQLKEDKEAAAQDAIQEAAITTAVKNAK IDEIPDAMIQEDVDTQLNQYLGNMQRQGIDPQTYFKLTNTTEQQLRAQLSTDAAERVKTN LVLEAIVAKEDLKADKKEIEQEIKDLAAEYNMDEKTVRNTLTDDMLSHDIAVRKAMNLIT DSAKQVGKAQLEKDSDK >gi|260196050|gb|ACQN01000017.1| GENE 93 97789 - 99072 251 427 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 155 418 258 457 466 101 29 2e-20 MATKYPDGVDEITCSFCGKTQAQVKKMIAGNGVYICNECVALSKEIIDDELKADSLKETK DLPKPVEIKKQLDEYVVGQDRAKKVLSVAVYNHYKRINQMDIDDSTELQKSNIALIGPTG SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIERAQRGIIY IDEIDKISKKAENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIKIDTKN ILFIVGGAFDGIEGIVKSRLGKKTIGFGAESKFDEFDHDADSWNKYLTTGDLVKFGLIPE FIGRIPVISTLDKLQKADLIRILTEPKNALVKQYQKLFEIDKVNLHFSDGALEAISEQAL ERNMGARGLRTIIENAMMDTMYTIPSEKDVAKVEITRDVITKHASPRITRKEVNNDVEMD GTDEDNK >gi|260196050|gb|ACQN01000017.1| GENE 94 99047 - 99646 667 199 aa, chain + ## HITS:1 COG:BS_ysxC KEGG:ns NR:ns ## COG: BS_ysxC COG0218 # Protein_GI_number: 16079871 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus subtilis # 4 183 1 179 195 200 53.0 1e-51 MARMKIISSEYSVSAVREDQYPRDILPEIALAGRSNVGKSSLINSFLNRKNLARTSSQPG KTQTLNFYKVNNSFYLVDVPGYGYARVSKAQREQFGEMIQDYLETRGNLEGLIIIIDARH EPTVDDIAMYNYALLLDLPILVVATKMDKIKKSQYNKVFSNLRKHLDLDHDNVSVLTYSS ESKLHLAELNKWIEDKICL >gi|260196050|gb|ACQN01000017.1| GENE 95 99664 - 99804 222 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLTFKREDELEKMLNQFAIFPDDPKKTAKQKGKKGSEQKPNEKNE >gi|260196050|gb|ACQN01000017.1| GENE 96 100070 - 100525 453 151 aa, chain + ## HITS:1 COG:no KEGG:Ldb0783 NR:ns ## KEGG: Ldb0783 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 2 151 70 220 220 144 47.0 7e-34 MAGKITASEWPPMHRINWDEFPRDNMAKLNLSRTTFLTKDELDTGWTKVQQNLYYAPAVF YLTIPKNSSNWSIYDLGAFSQTLMLAATDIGLGSMVAYEFVKYPDEIRQVLPIPEKEAIA VGIAVGYEAENHINNFKSERLSLDKVLQIFD Prediction of potential genes in microbial genomes Time: Wed May 25 13:54:56 2011 Seq name: gi|260196049|gb|ACQN01000018.1| Lactobacillus jensenii 115-3-CHN cont1.18, whole genome shotgun sequence Length of sequence - 42814 bp Number of predicted genes - 41, with homology - 40 Number of transcription units - 17, operones - 11 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 14 - 73 7.1 1 1 Op 1 . + CDS 150 - 338 257 ## gi|256850973|ref|ZP_05556362.1| predicted protein + Prom 340 - 399 6.0 2 1 Op 2 . + CDS 423 - 878 441 ## gi|282932072|ref|ZP_06337530.1| conserved hypothetical protein + Term 1095 - 1132 1.0 3 2 Op 1 . + CDS 1228 - 2235 1066 ## COG2502 Asparagine synthetase A 4 2 Op 2 . + CDS 2284 - 4692 2269 ## COG0474 Cation transport ATPase 5 3 Op 1 13/0.000 - CDS 4828 - 5628 815 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 6 3 Op 2 13/0.000 - CDS 5618 - 6400 961 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 7 3 Op 3 . - CDS 6400 - 7314 926 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 7561 - 7620 11.7 + Prom 7503 - 7562 8.8 8 4 Tu 1 . + CDS 7681 - 8490 795 ## COG2746 Aminoglycoside N3'-acetyltransferase + Term 8656 - 8715 12.7 - Term 8654 - 8690 4.2 9 5 Op 1 . - CDS 8695 - 9633 960 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Term 9643 - 9681 5.0 10 5 Op 2 . - CDS 9702 - 11081 1258 ## COG0531 Amino acid transporters - Prom 11118 - 11177 12.8 + Prom 11138 - 11197 7.5 11 6 Op 1 . + CDS 11224 - 13329 1772 ## CLM_2311 viral enhancin protein 12 6 Op 2 . + CDS 13374 - 14666 2225 ## gi|256850985|ref|ZP_05556374.1| predicted protein + Term 14673 - 14721 5.1 - Term 14656 - 14713 15.2 13 7 Tu 1 . - CDS 14717 - 15328 252 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 - Prom 15572 - 15631 7.3 + Prom 15310 - 15369 7.4 14 8 Op 1 . + CDS 15446 - 17248 1791 ## COG0322 Nuclease subunit of the excinuclease complex + Prom 17253 - 17312 4.4 15 8 Op 2 . + CDS 17332 - 18630 1745 ## COG0536 Predicted GTPase 16 8 Op 3 . + CDS 18649 - 20565 1305 ## COG1835 Predicted acyltransferases 17 8 Op 4 4/0.000 + CDS 20581 - 21510 911 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 18 8 Op 5 . + CDS 21514 - 22308 825 ## COG0300 Short-chain dehydrogenases of various substrate specificities 19 8 Op 6 . + CDS 22308 - 22568 224 ## LGAS_0876 hypothetical protein + Prom 22573 - 22632 1.6 20 9 Op 1 . + CDS 22675 - 22860 321 ## PROTEIN SUPPORTED gi|227526363|ref|ZP_03956412.1| 50S ribosomal protein L32 + Term 22867 - 22898 -0.7 21 9 Op 2 . + CDS 22929 - 24494 1399 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 24496 - 24542 11.1 + Prom 24508 - 24567 4.6 22 10 Op 1 . + CDS 24594 - 24926 305 ## gi|256850995|ref|ZP_05556384.1| predicted protein 23 10 Op 2 . + CDS 24995 - 25318 206 ## gi|256850996|ref|ZP_05556385.1| predicted protein + Term 25327 - 25362 4.3 - Term 25315 - 25350 5.1 24 11 Tu 1 . - CDS 25370 - 25573 314 ## LGAS_0879 hypothetical protein - Prom 25781 - 25840 8.3 + Prom 25606 - 25665 10.9 25 12 Op 1 3/0.000 + CDS 25685 - 28804 3339 ## COG0587 DNA polymerase III, alpha subunit + Prom 28828 - 28887 5.2 26 12 Op 2 12/0.000 + CDS 28972 - 29931 1302 ## COG0205 6-phosphofructokinase 27 12 Op 3 . + CDS 29963 - 31732 2406 ## COG0469 Pyruvate kinase + Term 31745 - 31809 11.1 + Prom 31763 - 31822 10.1 28 13 Op 1 . + CDS 31857 - 32735 459 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains 29 13 Op 2 . + CDS 32722 - 33624 785 ## COG4974 Site-specific recombinase XerD 30 13 Op 3 . + CDS 33627 - 33965 470 ## LCRIS_01011 reductase 31 13 Op 4 21/0.000 + CDS 33968 - 34696 655 ## COG1354 Uncharacterized conserved protein 32 13 Op 5 12/0.000 + CDS 34700 - 35299 824 ## COG1386 Predicted transcriptional regulator containing the HTH domain 33 13 Op 6 . + CDS 35299 - 36012 726 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Term 36183 - 36218 5.2 - Term 35810 - 35848 2.1 34 14 Tu 1 . - CDS 36029 - 36364 163 ## - Prom 36548 - 36607 4.2 35 15 Tu 1 . + CDS 36273 - 36800 418 ## COG3601 Predicted membrane protein + Term 36820 - 36846 -1.0 + Prom 36811 - 36870 7.8 36 16 Op 1 . + CDS 36894 - 37451 507 ## gi|256851008|ref|ZP_05556397.1| predicted protein 37 16 Op 2 21/0.000 + CDS 37489 - 38154 221 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 + Prom 38169 - 38228 3.9 38 16 Op 3 3/0.000 + CDS 38249 - 39457 1999 ## PROTEIN SUPPORTED gi|227526346|ref|ZP_03956395.1| 30S ribosomal protein S1 + Term 39458 - 39510 7.6 39 16 Op 4 3/0.000 + CDS 39536 - 40846 1583 ## COG1160 Predicted GTPases + Prom 40867 - 40926 7.8 40 16 Op 5 . + CDS 41066 - 41341 165 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 + Term 41348 - 41381 -0.5 + Prom 41365 - 41424 6.9 41 17 Tu 1 . + CDS 41455 - 42705 1456 ## COG0457 FOG: TPR repeat + Term 42718 - 42757 5.2 Predicted protein(s) >gi|260196049|gb|ACQN01000018.1| GENE 1 150 - 338 257 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850973|ref|ZP_05556362.1| ## NR: gi|256850973|ref|ZP_05556362.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 62 1 62 62 91 100.0 1e-17 MATSEAQKRANQKWRSHHKDKQQIYNHRSTAKRFVKLYANLHDLDVLDEMIKERRGELEK LG >gi|260196049|gb|ACQN01000018.1| GENE 2 423 - 878 441 151 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282932072|ref|ZP_06337530.1| ## NR: gi|282932072|ref|ZP_06337530.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 151 1 151 151 270 100.0 2e-71 MKEFNFDFVKKSHLLEKVNLQISKISNFYQNKQYNEMFFNIRRDVEKLAALLVEQAHLVS DENQGFGLSGKIKTLRQNAVYPATIMRLFDRLRTYGSIAVHSSMNIDEYTAQLALQNYHD LLVFLANYHDGLNAKYADILLKRVQRKKVTA >gi|260196049|gb|ACQN01000018.1| GENE 3 1228 - 2235 1066 335 aa, chain + ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 9 335 3 327 327 362 55.0 1e-100 MKTFIPADYKATRSLRETEEAIRDIRDIFQIELAEKLNLLRVTAPLFVKKSSGFNDNLNG VERPVAFETKEEPDEDLQIVHSLAKWKRFALKRYGFKMGGGLFTNMNAIRRDEDTDNLHS IYVDQWDWEKIIAKEDRTTEFLKKTVKDIYSAMKITGKKVTKKYGDIFEFPEDIYFVTSE ELEARWPELTAKEREDKICEEYKAVFVMHIGGKLPLTGEPHDLRAPDYDDWKLNGDLLFW NPVLKCAFEVSSMGIRVDEEALKRQLTLTDTLDRLELPFHKMLMDGELPYTIGGGIGQSR FCMLLLKKAHIGEVQVSVWPEKTIKECEAGGIHLL >gi|260196049|gb|ACQN01000018.1| GENE 4 2284 - 4692 2269 802 aa, chain + ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 12 764 5 764 775 689 51.0 0 MAVKQHIDLDIGLTTPEVSKRIKQGLVNEATDNQFKSNWQIIAENTFTYFNLIFAILAGL LIVVGSYRDLSFLPVIIANTIIGIVQEIRAKHVLSKLTVMNEAEVLVIRDGKKIRQPIEK LVQDDVVILKTGDQIPADGRVLAGEARVNEALLTGEADEIKKTIGSELMSGSFLVSGEIY MQLEKVGNESYIAKLTLEAKAMKSVEQSEMVRSINKIIKWVGIIIIPLGIALFSQSYFLN HAGLADSITSMEAAIIGMIPEGLYLLTTIALAMAATRLARRQVMLHNMKSVETLARVNVL CVDKTGTITEPVMTVQKAITSNNVTSSDLNKYLADFSGNMPVDNETMKAVSEKFKTRLFQ KAKLIVPFTSVNKYSAAVFEKYSLVLGAPEMVLRADFEKYLPEFQAYVESGYRVVVFAKY PKEISENSPLTESVSVLGYILINNPIRKEAPATFKYFAKQGVDIKVISGDNPVTVSRVAR EAGIRNSEKYIDLSKFNGEYKDAVKEYTVFGRVKPDQKKNLILALKEVGKTVAMTGDGVN DILAMKEADCSIAMASGNSAAVQASQVVLLDSNFAKMPDVVNEGRRVVNNIERSASLFLV KNIFSFLMSIISLMLTVNYPLRPSQITLISAFTIGLPSFLLALESNHNIIRGNFIANVLS KSIPGGLTDMLAVWVWIAANMALDLGHKDLSTTATMVLVAVGMMVLYHISEPLNQFRLGV MVIAFFTIVVSIVFFHHFFALTMISGRSIFLLFVLFFAEVSIFRWLSAIADGMAEVGATL VQNGRETTFAQVKAAYKRGKND >gi|260196049|gb|ACQN01000018.1| GENE 5 4828 - 5628 815 266 aa, chain - ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 7 265 16 275 275 328 64.0 9e-90 MKTNTKLTKKDLFQANWRWLWASQLSWNYEKMMAPGYFYTVLPFLKRFYQDDELVDMMKM HSQFFNTNAFTGPFIIGMDLAIEEHQGYKAKETVAGIKTGLMGPLAGVGDTIFGVIIPTI CGSIGAYMGLKGNALGAIIWLLVNIFILFARFAILPMGYYQGEKLINSAEGKLNAVTDSA ILLGVTVVGALIPTVIKADVPFVFSAGKVTLKLQTVLNQIMPSLIPVLLVAFVYWLLGRK KMTSTKVILFVLVLGIILSYFHILGA >gi|260196049|gb|ACQN01000018.1| GENE 6 5618 - 6400 961 260 aa, chain - ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 2 260 3 267 267 271 61.0 9e-73 MIAWWQIILLTALAFGMILDQLTLVTINSPLLIGMISGIIMGDIKTGLVVGSTLQLMVLG VSTYGGASMPDFMTGAIVGTVYAVLTNKGTQFAIGLAVPVGLLMVQLDVLARFFNTIFQH KMDQAIKNNNTKVASRNAYLGFLSWGLSRAIPVFILLVIGNDIVKTILRVVPVWLTNGLK VSGGILPVVGIAILLRYLPTKKFISYLIIGFLAAAYLKMPMLGVALLGAALAILNYKREN TPTMQTNTTSYENAEGEYED >gi|260196049|gb|ACQN01000018.1| GENE 7 6400 - 7314 926 304 aa, chain - ## HITS:1 COG:lin0021 KEGG:ns NR:ns ## COG: lin0021 COG3444 # Protein_GI_number: 16799100 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 144 296 9 161 162 182 60.0 7e-46 MPNLLLISHGSYAKATLSSCEMILGQLKNIKAIEFKQTMNQDDLLKAIEIAAQTFTKLDA IIVDFTGGTPANTAIRFQAQHPEVKIYTGLSFALLLAVASGTPFSDAYKQVAQTSGLLGE KKPEEKTKVSTITKSTTQKTAMFIRIDERLIHGQVATMWTNALKLTRLMVIDDQIVKSPI QKTALKTACPNGIHLSILTAAGAAKRIKQGQYQGQTVLILVKRPAILKQLVDLGVKLPEI NVGNMSTKEGSQQVAKSVAVTDSDIADFKYLEDKGLTIYHQMIPSEAREDFMNLLKSNEI GGQN >gi|260196049|gb|ACQN01000018.1| GENE 8 7681 - 8490 795 269 aa, chain + ## HITS:1 COG:alr1528 KEGG:ns NR:ns ## COG: alr1528 COG2746 # Protein_GI_number: 17229020 # Func_class: V Defense mechanisms # Function: Aminoglycoside N3'-acetyltransferase # Organism: Nostoc sp. PCC 7120 # 14 250 19 262 274 145 33.0 1e-34 MEEDRELIYSDTDLAQSLKEMGISSTDTLLVNLRMSALGIFPGKQQSLFSALKLLVKDGN IILPSFSLHLKEPQVRAELKEKIMKKMPAFDSEATPVTGLDSFMEYFRMQKEVLRDNHPI YSFSAWGKDKETIVKPHTFDLPFGKQGVLGHLLRLNAKVVCLGTNFETCLAPYLAESEIS RPLIQEKAPVLIAGEKVWVSFNNVELNKYHDYEDLGTHFLQKYPVKIANLPAGQILIFNL QDFVNFACDWYQKKDRVHLLNAGWKGPEI >gi|260196049|gb|ACQN01000018.1| GENE 9 8695 - 9633 960 312 aa, chain - ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 2 306 3 309 313 239 41.0 6e-63 MKNIYFNHDGNTDDLVSLLLLLQAPDINLIGVSAIDGDGDVIASCEASRKIIDRFNTFNH QLEVAMSNSRAHHQFPEEWRQSTFTFNSFPILNEHGTINTPAAKNPAHIDMAEKIMAQTE KTTLIMTGPITDLARALDYEPNLENKIDKLYWMGGSLDGHGNVFVPYYDTTQEWNAFWDP EAVERVWNSNIDIQMVGLESTEEIPLNEELKQHFASLRRYPAMDLIGLGYSLIISSQPGN QYYLWDVLTTLSALYPDLVETRKAKSYVLTQGAAAGRLVESEQGRPMTLVTKADKKKFFE KFDELALSAKFK >gi|260196049|gb|ACQN01000018.1| GENE 10 9702 - 11081 1258 459 aa, chain - ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 2 458 3 462 463 444 51.0 1e-124 MNIFRKESINKYLAQDHKFSKTLTAKDLISLGVGAVIGTGIFILPGTVAANYAGPGVTLS FLLAALVCVLSAMSYAEFSSTMPVAGSAYSYGNIIYGEIIGWILGWALILEYMLAVAAVA AGWSSYFQSFLAPFNIKLPAAFVSSFNPSKGTYVDIIAIGIVLLITLLLSRGMRDSVKIN NFAVILKIAIIVLFIIVGANFIKPANYQPFLPYHFSGVIKGATTVFFAFLGFDCVSSSAA EVKNPQKNMPLGIIGTLLIATLFYMGVSIVLTGMVNYKALDVANPVAFALQFAHQDWIAQ LLSFGALVGMATMMLTMIYASSRLVYAMARDGLLPQSLAKLSTKNKTPQLSLWVVAIVIS LGAGVFSVDQLTSLVNFGTLLAFTFVSFGILPLRKRKDLPNNGYQMPGYPVLPILSGLIC LYLLTQLNIDVYIMAAIWFSLGIIIYFLYGYKHSLLNKN >gi|260196049|gb|ACQN01000018.1| GENE 11 11224 - 13329 1772 701 aa, chain + ## HITS:1 COG:no KEGG:CLM_2311 NR:ns ## KEGG: CLM_2311 # Name: not_defined # Def: viral enhancin protein # Organism: C.botulinum_A2 # Pathway: not_defined # 237 701 23 481 925 142 31.0 5e-32 MKKEFFKKRDFKKKILISSAVAASLLSVGNASQLVKAASTSSSQTDQQSQVYSWTFKGLG DTKFATIEINGSNLNVVATGVAPHVYWKNRNYAFVKVIRDNKVIYEKDFIGNKGVKFNEN FTLKKGDKIAIYHAEPTRLISSMKFRSSFSVSTFYYEYTGAGEISNQTNFENLQTQLNTL FTSDKDDELSTKASKEQISAIKLNFILSTGLTAEQKSIIKQRLATANRLFDEAADLTSIK KDQVQSKSFYVLPTQSDSNAEGRQMGTSQDRQPLGIILTEGSTIKIRQVNDNYKGQVNVE LVGYASAEIKSTSVGSDWVEITATRDDAVVFLKTPQSNATSVQPKLEYELVSGVAPALPT FTATNSQTDVLKQWQKTRAAFALIEANNINILVPLSDYNLVAKTDIKQLIDQYDNQVFKL YNYLTGYDYNDNPDKNVKGKYFVMSDQTGSGAGYYSGRLTAQNGKSVSAYLSINWLPLHE IGHGYEIPSDGLWIRDSFNNIFGTLYQLEYEKDNFEKKSWLLYGQKFASVNDFIKQVKSG KDFNGLNFFGRLHFWMNLAYNLKGMDAFRNFNIYYKEAARKGLKFKYIPDDWVRVYKDKY GLNVAPYWQTINEKIDTTLESNVYNLPAVAMIYQVVPDDLIDSATKVNTLISKLGLTDNL LASQGMLVTNQTLAKAGLTSDITLRIADSNFDAINGSTLYV >gi|260196049|gb|ACQN01000018.1| GENE 12 13374 - 14666 2225 430 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850985|ref|ZP_05556374.1| ## NR: gi|256850985|ref|ZP_05556374.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 332 430 16 114 114 162 100.0 5e-38 MVSLGSIANGIYTFRSSVDGLNFVNKYLYVKDSGIVDETIDPDSIGRKTSSTKEVSQSES VAKEAETSPEASMEDDGALQPFGSSESSGNESSEASSSEPSSSAGSETSLSESSSSASSE ASTSEPSSSASSETSSSESSSSASSEANTSEPSSSASSETSSSESSSSASSEASTSEPSS SASSETSSSEPSSSAGSETSSSESSSSASSEANTSEPSSSASSETSSSESSSSASSETSS SEPSSSASSEASTSKPSTSAGSETSSSESSSSASSEASSSEPSSSSASSEASSSEPSSSE SSEASTSEPSTSVSSEVSSGESSTSASSSESNPINSSLNDVDKTINKSLITFLITNTKTD KQVTEKKKNKTIANPIMNKAPKHIKGLKQPNKSVASKNQKQEKYTFSWIPTLLGFSALVA AIYGIFKFKK >gi|260196049|gb|ACQN01000018.1| GENE 13 14717 - 15328 252 203 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 3 168 6 166 199 101 33 6e-21 MTEWMISLINQFGFWAILFLIALENVFPPIPSEVILSFGGFLTLHTKMSLWEVVLASTIG SVLGALILYYIGSLFTEVRLKKLVNNKFIKMLGFKEDDVSKTIAWFNKHGKGAIFYGRFV PIIRSLISIPAGTAQVKLSLFVGLTFLGSLIWNTVLSSLGFYFGSKWDIVVQIIDDYAIL CAGLLVIAFGIGCVYWYKKRIKK >gi|260196049|gb|ACQN01000018.1| GENE 14 15446 - 17248 1791 600 aa, chain + ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 1 596 1 586 603 600 50.0 1e-171 MANQLIENKLKLLPEQPGCYLMKNINGTVIYVGKSKNLKNRVRSYFKSKQVGRRAELVKE IADFDIITVTSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITNEKDPQTRLTSIVH KDNGYYFGPYPNVYAAQATLRFIQKVWPLRRCNGHQGRPCLYYHMGQCLGACFQEVPRSK YEAQIAKIKRFLNGDITQVKQELTEKMQIASGNLEFERAAEIRDQLRYIEQTVEKQKIIS NDHTQRDIFNFYVDKSWISVQIFFLRQAKLLRRETKMFPLMDLSDPKDEFMSFIVQFYNQ KNRILPREVLVPEGLDNDNLSEVLGVKVRTPQRGTKRDLLKMAKDNAKLKLDEKFRLLEL GNRKTKGAQAEIFQALGLPYGHIIESFDHSHIQGTDPVSACVVFKDGEPFKTAYRKYKLK GEVEHQNGADEVGNTREVVRRRYSRMLKEHSQLPDLILMDGGQIQVDACLDVLRNELNCD IPVAGMVKDNHHHTNHLIFGDPINGKPLELIPMNPKSEGFYLMTRIQDEVHRFAITFHRQ THAKNSLASKLDGIKGIGPKSRNKLLKKFGSLKKIKDASVEELQDAGLTLPQAQSVKLTL >gi|260196049|gb|ACQN01000018.1| GENE 15 17332 - 18630 1745 432 aa, chain + ## HITS:1 COG:SPy1333 KEGG:ns NR:ns ## COG: SPy1333 COG0536 # Protein_GI_number: 15675273 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 1 431 1 436 437 432 59.0 1e-121 MPTFVDQTKIEVQAGKGGDGMVAFRHEKYVPNGGPAGGDGGRGGSIIFVADSGLRTLMDF RYRRKFKADNGENGRIKSQYGRGAKDLYLKVPVGTVVSDFFTGEIIGDMTKKGQELVVAK GGRGGRGNIHFATSVNTAPEIAENGEPGEFRTLKLELKVLADVGLVGFPSVGKSTLLSVV TKAKPKIAAYEFTTLTPNLGMVVLNDGRDFSMADLPGLIEGASQGVGLGIQFLRHVERTK VILHLVSMDPNNGRDAVEDYKIIRKELSNYTADLTKKREIIVASQMDIPGSDEKFADFKQ GLEELGIEEPIFKISSVTHQGLEPLMNKAADLVAEVEASQEVEEVTTEEKNYKFKPEVDE SFKVERVGEHEFVVTGAKIERLVQRTNIEHQDGIMLLARKLKNMGVDDALRAKGAVDGDD VTIGDISFEFVQ >gi|260196049|gb|ACQN01000018.1| GENE 16 18649 - 20565 1305 638 aa, chain + ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 6 632 3 600 605 380 38.0 1e-105 MQRKNRFIKGYSGLRALAVIGVILYHFDPNTFIGGYLGVPIFFVLSGYLVTDQILASYEK KGYYDNKRFYLSRLKRLYPQLITLLWASGAYILMFQQQTLAKFNQIVITNLLNIYNFWQI VNGQSYFERFAGNVSPFTHLWTMSIEGQFYVFWPLIMMVLIKFCKTRYRAFWIVIGFSIL SALEMAILYQPNVDTSRIYYGTDTRFFALGLGAALAFVWPIRHLNPKINKNDWIILDITG AVSLLGMLWLFLSRIMDPQAAFAYRGGMFLFSLFTTILVAIIAHPASHWNQIFTNQIFDW IGSRSYGIYLYQFPVMVFFEAKFTDMANHAVLYRLIELAIILGLSELTYRFIEKPFSKIS LESIRIFIAHLKNSEKNAHLRIATGMSALILALGTIALIKSPAIKVVNANKSQLAERIKK NRANQEKSNKQLIDKFKSTKKKESKSKIYVEAEQAAKNKPVNKEFEKYGISQVELQLAQK VHVTAIGDSVMAGSSDVLKQLMPNALIDAAVSRQLVPTIGLFDQYKGQGALAENVLIGLG TNGPFSMNDVDHLMKIIGPKRQAFWISIHVPSRQWQGPVNDLIAKASAKYKNLSVIDWYS YSKNHNDWFYGDQTHPNIEGSKYYSSYITNEILKKAKF >gi|260196049|gb|ACQN01000018.1| GENE 17 20581 - 21510 911 309 aa, chain + ## HITS:1 COG:SPy0924 KEGG:ns NR:ns ## COG: SPy0924 COG1234 # Protein_GI_number: 15674944 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Streptococcus pyogenes M1 GAS # 1 301 1 305 309 330 54.0 2e-90 MEIQFLGTGAGQPSKQRNVSSLALKLLDELNEIWLFDVGEATQHQILRTNIRPRKITKIF ISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGLEQFVTTALRISKTKVSYPIHFVEL KDDQKIFENAEFSVYCKKLDHRVASFGFRVVEKSHPGVLLMDKLAPYHLPNGPILGQLKA GKVVELEDGRVLNGKDFLGPEKKGRIVTIIYDTRITPSIAELAQDADVLVHESTFAGPEG KMAKAYYHSTATQAAEIAKKANVKRLFLTHVSARYLGSKAHILEKQAQKVFPNTVLVNDL DVFDIPMRG >gi|260196049|gb|ACQN01000018.1| GENE 18 21514 - 22308 825 264 aa, chain + ## HITS:1 COG:BS_yqjQ KEGG:ns NR:ns ## COG: BS_yqjQ COG0300 # Protein_GI_number: 16079435 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Bacillus subtilis # 8 257 7 252 259 211 45.0 9e-55 MSNSLRNKVVVITGASSGLGRSIALQSAERGANLILIARREEKLLEVAAEAKELSGAEVW VYPTDMGKANQIEDTFKKIIVAVKHIDFLVNAAGFGDFDDFFDQNPQLITNMFQVNVLGL IYFTRLIARVMIDQKSGQVINFGSMAGKIPTTKSAVYSATKAAVIQFSNVLRLELKPFGV KVMTVNPGPVYTNFFNRADHTGDYVHNVQSFMLDPDDVAWQVVHYFGSDKRELNLPLSLA AMAKLYNLFPSAGDYLSMIFGSRK >gi|260196049|gb|ACQN01000018.1| GENE 19 22308 - 22568 224 86 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0876 NR:ns ## KEGG: LGAS_0876 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 3 83 1 83 108 64 60.0 1e-09 MDMNKQKNLVIGLAVSLLLIIFVLLNTEPVTINFLVVKPKLPLIVVLVIMAFLGALVSWL MGEKSQNDQKGAWGFFKKKNDKKINE >gi|260196049|gb|ACQN01000018.1| GENE 20 22675 - 22860 321 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526363|ref|ZP_03956412.1| 50S ribosomal protein L32 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 128 100 6e-29 MAVPARKTSKQKKRSRRGHIKLTVPAMHYDATTGEYRLSHRVSPNGYYKGRQVVKKANNN D >gi|260196049|gb|ACQN01000018.1| GENE 21 22929 - 24494 1399 521 aa, chain + ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 505 1 501 519 367 38.0 1e-101 MKLVFLHTSDTHGFLLPTDYQDKNDYEAPISLSRVSTAIKKQREKWGADNVVVTDAGDCL QGSPLASFCHKDISFKRLNQFTAAYNEIGYDGRCLGNHDFNFGLDYLKHYIEKNTASFVN DNILDENTDNPAFGQEYKIIERHGVKIGLLGITTQYVPHWEPEEHIQGLKFVSAFEQIKK LAPKLKKDVDILAVMYHGGFESDPVTGVATEPHNGENEGYKILTEVPEVDVFLTGHQHRR LNLVVNNTAIVQPGYRGECVAQVVIDLDKTSDGVKINNLETSLIETKDYEPDSEIVKDIT DVDQKAQAWLDQPIAHLSEPAPIKNAFEGRTKGAPFINLLQQMQIYFTGADISATAVMSE KARGFTNQTVTLREVILNYPYANQLCKVRLTGKELKEILEHTATFLEKDNEGNIHFIDRY IKPKPQLYHFDVFYPLHYEVDLSKPHGQRVVELTLHGNPIEDDHIYHLAVNNYRAMGGGF YPAYSMDKIELMLDKDYVQMFTEYLTSGEVKVDTKQYYKFY >gi|260196049|gb|ACQN01000018.1| GENE 22 24594 - 24926 305 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850995|ref|ZP_05556384.1| ## NR: gi|256850995|ref|ZP_05556384.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 110 1 110 110 196 100.0 3e-49 MKKVISFCHKHPFITPAIIFWSIVFLMFFGPKILTSIKSAYFHYQITQVVSEKKPQAQAL DMVQEDTETNVYYQTYEYKDRKYILACFKKSGKRHFDWYSLKTEKIEHLK >gi|260196049|gb|ACQN01000018.1| GENE 23 24995 - 25318 206 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850996|ref|ZP_05556385.1| ## NR: gi|256850996|ref|ZP_05556385.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 107 1 107 107 184 100.0 2e-45 MLILGGIYLSYLSFQEEHDTKVAYAEIELALKKQNINTHEIKVAKPFVRNQRAFTNTIWY TLAFTFKGQKYEATYREELIDKIITKDWAIRYKPEYQVKIEKVKEFQ >gi|260196049|gb|ACQN01000018.1| GENE 24 25370 - 25573 314 67 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0879 NR:ns ## KEGG: LGAS_0879 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 66 42 107 107 84 65.0 2e-15 MRYIISAIWSTIFMSIIGFIAAALTETQFNPIQAIRVGIVFGLLFAVIIPFIAAKSYKGK TKYSKML >gi|260196049|gb|ACQN01000018.1| GENE 25 25685 - 28804 3339 1039 aa, chain + ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 6 1017 6 1018 1108 739 42.0 0 MQVSGLQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAQKANLK PLLGMTIRLNGIVDQAHRYDLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLTLKQLA KYLSDQVFIVPANITSELRYLAENNEKLGSDFIRELQKIIPSSSDLYLGVYAGKNQPYID YAKSMAKQFNLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLALQKGSHYLRTS GELVSAYNECGILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKKYLRQLVQKGL ARRFNGQTIPEIYQKRLDYELKIIDQMGFDDYFLIVWDVINYAHSVDITTGPGRGSAAGS LVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRRDEIIKYMFEKYGMDHAA QILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSKITLAQAYQESKALQLLVNA SELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQAGTLGIPVTQQTKAHVEE LGLLKIDFLGLRNLTILGDTVELLAKDGIKLDPKRIPLDDVKTLQLFQRGKTDAVFQFES QGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDHFINRKQGKEPITYPDSSLAKLLQPT YGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQEREKFIAGAVKNGHPQAT ASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAFFTALLNSVSANRVKAGEY ITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLKAIKGLRVDFLRNIAGLPKNFTSLAD FLRKIDVKFLSEQAIAAMIKAGCFDKIDENRKMLLANCKEIVENIKFTGQNETLSEGLGG IRLEQAPAPNSNEKATMEEEVLGFSTTKTPILVVQKYAERFNAQALNSFTVNETGIAVGK LIKLKLIRTKKGDTMAFSTFRDASSEQEITIFPGIYNNISNILKEGQIYLLGIRTQSDRY DAGKVQYMLTNLKLVNFTE >gi|260196049|gb|ACQN01000018.1| GENE 26 28972 - 29931 1302 319 aa, chain + ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 318 1 318 319 380 61.0 1e-105 MKRIGILTSGGDAPGMNAAVRAVARTAMANGIEVFGIRYGFAGLVAGDIFPMTSDSVANI LTRGGTFLYTARYPEFAQEEGQLRGIEQLKKHGIEALVVIGGDGSYHGALALTKRGFNSI GLPGTIDNDIPFTDLTIGFDTACTTAADAIDKIRDTAISHQRVFVINVMGRDCGDIAMRV GVASGADAIVIPEKPYDIEAIANKLKKSFANGKDHGIVIVAEGVMSSEDFLKELLKYGDF DARTEVLGHMQRGGEPTVSDRVLASKMGSYAVKLLMEGKGGLAVGIEDNHLCTHDIVDLF DSRHVGDYSLLAMNDDLSR >gi|260196049|gb|ACQN01000018.1| GENE 27 29963 - 31732 2406 589 aa, chain + ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 479 1 475 475 526 59.0 1e-149 MKKTKIVSTLGPASNDLETIIKLIEAGANVFRFNFSHGDHEEHLSRMKLVREAEKKTGKL VGIMLDTKGAEIRTTEQEEGKFTIHTGETMRISMDATKKGNKDKIYVTYPGLYDDTHVGG HVLIDDGKVDLLITEKDKANKELVTKAQNTGLIGSKKGVNAPGVEIRLPGITEKDTDDIN FGLQHGINFISASFVRKAQDVLDIRQLCENAGQDHVKIFPKIESQEGIDNIDSILQVSDG LMVARGDMGVEIPFMNVPFVQKTLIKKANALGKPVITATQMLDSMQENPRPTRAEVTDVA NAVLDGTDATMLSGESANGLYPVQSVQAMHDIDVRTEKQIAQRNTLALQRFEEYQGSNVT EAIGESVVRTAEELGVKTIITATQSGYTARMISKYRPNADIVALTFDEKIQHSLGIVWGV QPLLTEKPTSTDDMFEKAAKIAKENGFVKDGDLVIIVAGVPVGESGTTNLMKLELIGSKL VKGLGVGTGSVIGKAVVANSADEANNKVEDGDILVAKTTDKDYLPAIKKASGLVVEASGL TSHAAVVGLSLGIPVIVGATDATDKIADNTTITIDARRGAVYQGEAANL >gi|260196049|gb|ACQN01000018.1| GENE 28 31857 - 32735 459 292 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 1 271 1 267 285 181 36 6e-45 MLGTIQEGKVIDKNDEAYYVQVNGVTYELNKLEVTQEQMPQLGDIVQGFIYDNKNHKKQM TQFYPFAMPDQYGWSKVTEVRRDLGVFVDIGLPDKDVVISLDDLPLDKAKWPRIGDRLLV TLETDHKDRIWAKMADENVFEQLSSKFPQNMKNKNLLVTVYATRPVGAFVLTSDFYLGFI HESEMMTPLRLGEQIKARVVGISKYGRLNLSVLPRAFEEIDEDSQMILMSLRREASKSLP FYDKSDAQDIKNHFGISKSAFKRAIGRLLKQGLIVEDKDAGKITLVDKNEEE >gi|260196049|gb|ACQN01000018.1| GENE 29 32722 - 33624 785 300 aa, chain + ## HITS:1 COG:lin2069 KEGG:ns NR:ns ## COG: lin2069 COG4974 # Protein_GI_number: 16801135 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 7 300 3 297 297 270 47.0 2e-72 MKKNNLDQVADFLRFCSLERGLSKNTVDSYQLDLNQFIEYLDKEKITDWPEDPLIIDSYL AKQRDEGKKTSTISRGITTLRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVE QLLAQPDIKTTTGLRDRAILELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLV PVTDFALSWLDKYLKNVRDPALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLAKID KDITPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYQKTHPRA >gi|260196049|gb|ACQN01000018.1| GENE 30 33627 - 33965 470 112 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01011 NR:ns ## KEGG: LCRIS_01011 # Name: ribT # Def: reductase # Organism: L.crispatus # Pathway: not_defined # 1 111 1 111 120 128 53.0 6e-29 MLVKYRKDYEKIAMGLLSYLPDLRNLKNLQEEMSLYDNSSEFFLYLFRDKESDLIGIVGI QLLEHFVLIRYLSLAPGFRNHEYEQALMKDLREEFPKKRLTALPDYSYLFKD >gi|260196049|gb|ACQN01000018.1| GENE 31 33968 - 34696 655 242 aa, chain + ## HITS:1 COG:SA1326 KEGG:ns NR:ns ## COG: SA1326 COG1354 # Protein_GI_number: 15927076 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 6 240 11 244 251 127 34.0 1e-29 MTENLKVELPNFEGPLDLLLHLIRSQEIDIYDIPIAEITRQYLTYLEKMKELNLQLAGEY FVMASTLLRIKSQYLLPKNDFVELEQEPDIDPRQELVEQLVQYSVFKKISKYLKQRNDSV PVTVAKEPSVGQAKSISPLPLGQLSESELANTFSLLIRRYKLRTPESATVKIKYSSVSDM TKMLENKFSQVAKVSFFSCIQKIKTLDDVISLFLAILEMSKNKKIKVSQGREYGDLTLER ID >gi|260196049|gb|ACQN01000018.1| GENE 32 34700 - 35299 824 199 aa, chain + ## HITS:1 COG:SPy0367 KEGG:ns NR:ns ## COG: SPy0367 COG1386 # Protein_GI_number: 15674517 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pyogenes M1 GAS # 3 188 2 183 183 142 41.0 5e-34 MATKLAELESLLYLAGDTGVEQANLCQLLEIEAPALRELAKKLTQKLSEDENSGLQVSLI KDTYKMTTSYDVADVVEKYYQKDLSKTLSQSALEILAIVAYRQPITRVEIDEIRGVNSAG AIQTLIWRGLVKTSGKKDVPGHPNLYVTTDYFLQYFGYESLADLPVIEDFENESIDEKGQ VDLFKAKDSNNPQNRLGER >gi|260196049|gb|ACQN01000018.1| GENE 33 35299 - 36012 726 237 aa, chain + ## HITS:1 COG:BS_ypuL KEGG:ns NR:ns ## COG: BS_ypuL COG1187 # Protein_GI_number: 16079373 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Bacillus subtilis # 3 226 2 225 229 261 61.0 7e-70 MAERLQKLIAQAGVASRRKAEKMITEGRVAVNGRIVTELGTKVEPSANIEVDGLPIQKES KHTYLLYKPRGVISSVKDDKGRKTVLDFFEESPYRLYPVGRLDYDTSGLLLITNDGELAN KLMHPRHMVDKVYVAKIKGFLTPEEIHSLKHGVRIDGKKSAPAKVKIISTNREKGTSIVQ LTIHEGHYHQVKRMFKAVGHLVDKLSRERYAFLTLKSLTAGKYRELTREEVAKLKSM >gi|260196049|gb|ACQN01000018.1| GENE 34 36029 - 36364 163 111 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTSEKSIFKNGKIGIIGNSIFITTKAITPIITAAQVLARLDLDLVIIFPPNKRVCAPRGR PLRKYYVIFLYQPVFFHLDYTIGTLGFSHISGLLTQTAGRDFHPALKTLSY >gi|260196049|gb|ACQN01000018.1| GENE 35 36273 - 36800 418 175 aa, chain + ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 151 14 166 203 83 36.0 2e-16 MIGVIAFVVMKIEFPIIPIFPFLKMDFSDVIILIGSFLFGPISGIGMAFIKCFLSLALSG FNILSLVGQIAAFLASICYIVPLYMVSKKNEDKFIMQIAAVVVGTICLTLAMSLANIWLL MPMYAKFANFTFPPTYILYGVVPFNVVKGVINGILAIMVIKFVLPQLENFASKRF >gi|260196049|gb|ACQN01000018.1| GENE 36 36894 - 37451 507 185 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851008|ref|ZP_05556397.1| ## NR: gi|256851008|ref|ZP_05556397.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 185 4 188 188 199 99.0 9e-50 MNNNSSNNGPYKHFKRPKQGRAKVHKVQKSSISVEYHWIKWVIGLVILVLIAVPFYLMTK SKSQSADVATPTKSVISASSSSSSKSKKIKIVKSSESSSSRVSSGANVVTSSSKSTTASS NYQSSVASATTSSSSSSAANSYVIKEGDSLSSIAEKNGMTVDALAKLNNITDTANIKAGE TLKLK >gi|260196049|gb|ACQN01000018.1| GENE 37 37489 - 38154 221 221 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 3 211 37 279 863 89 26 3e-17 MQVAIDGPASAGKSTVAKIIAKKLDFIYIDTGAMYRACTFIARKENIDYGDEAHILAAIS QNKIEFKSENGEQRVYVAGEDVSLAIRTPEITANVSQVSALKGVREKMVELQREMAGSTN VIMDGRDIGTTVLPDAELKIFLVASVHSRAKRRLLDYAEKGIHEDLAKIEHDIAERDYKD SHRAISPLKKADDAVEVDTTNMSIDEVVSDILAKIKAKMAK >gi|260196049|gb|ACQN01000018.1| GENE 38 38249 - 39457 1999 402 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526346|ref|ZP_03956395.1| 30S ribosomal protein S1 [Lactobacillus jensenii JV-V16] # 1 402 1 402 402 774 99 0.0 MSDNSNQFLDALKEMQGVEVGNIVDVEVLSVEDGQIAVGVQNAGVEGVITRREFTQDRNA DLHDLVKPGDTFKALVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDYEAGNAIEGTVT SSVRGGLIVNVGTRGFLPASLISNHFVSDLKPYIGKTIKVKITEIDPNKNRLILSHKELI EEEREEAFETVASQLVAGDIVEGKVSRLTNFGAFVDVGGVDGLVHISEISYKHIDKPSDV LKTGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSELSEGEVVEGEVKSLTSFGAFV EVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLSINPDEKRISLSIKQAQPAAEG EGNNARRSASRNDSVAKKYMSDNNDNGFALGDIIGDQLKDRQ >gi|260196049|gb|ACQN01000018.1| GENE 39 39536 - 40846 1583 436 aa, chain + ## HITS:1 COG:SP1709 KEGG:ns NR:ns ## COG: SP1709 COG1160 # Protein_GI_number: 15901543 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 1 436 1 436 436 544 62.0 1e-154 MALPTVAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGG ITWEGGRIEDEIRAQADIAMEEADVIVMITSVALHLTDLDERIARILYRSSKPVILAVNK ADNPEQRADIYDFYSLGLGDPIPISSTHGTGIGDLLDAVVENFPPEADTKDEDEIAFSVI GRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAGIRRRGKVY EKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMIIVVNKWDLPK KDSNSAKDFTRVIREEFQYLDYAPIIFVSAKTGKNLDQLPDLIKEVAENQSQRIQSSVLN DMLIEASKLVPSPLIKGKRLRVYYMTQVAVQPPTFVVFVNDPELMHFSYKRFLINQLRDN FDFTGTPIKILPRKRK >gi|260196049|gb|ACQN01000018.1| GENE 40 41066 - 41341 165 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 4 91 6 93 96 68 36 8e-11 MANKAELVAEVAAKTKLTKKDVAAAVDAIFASIQQDLAKGEKVQLIGFGTFEVRNRAARK GRNPQTGVEIEIPASKVPAFKPGKALKDAVK >gi|260196049|gb|ACQN01000018.1| GENE 41 41455 - 42705 1456 416 aa, chain + ## HITS:1 COG:lin2036 KEGG:ns NR:ns ## COG: lin2036 COG0457 # Protein_GI_number: 16801102 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Listeria innocua # 1 413 1 417 417 176 30.0 1e-43 MSYSEQLLDAIEKHDFSQNNILLKKALDSDSSEILAALAENLTQMGFSNMAKDVYRVLIA NNPDEDLFKVYLAEILLNDGQDDDALSLLYSIDENSDSYLESLLIQADYYQSLGLFETAQ AKLQEAHELAPKEDAIIFGLAELAYSTGKNELALHYYQDLATRQKHFGEINLRERIFASL AKLGRYEEASEIIQKYGQDFIDIDTRYEAGLVLLSTKNYKKAIEYLTGVLEQASDYVNAY PLLAQAYEADGNNEKALETAQTGLTYNEYDETLYALIGRVAANCAKYDLAVDMIKKGLSF APDNMDLRVQLSNLYLYLKKDEENLQLFQEIDDENLEPQARWNIAVSLYRLEKYQESRNE FLLAYPNLQNNADFLRDMIRLFNLEGEQAALKDLLKKYLKLMPDDEEMLALYDELA Prediction of potential genes in microbial genomes Time: Wed May 25 13:56:27 2011 Seq name: gi|260196048|gb|ACQN01000019.1| Lactobacillus jensenii 115-3-CHN cont1.19, whole genome shotgun sequence Length of sequence - 36044 bp Number of predicted genes - 29, with homology - 27 Number of transcription units - 15, operones - 6 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 179 - 238 7.7 1 1 Op 1 . + CDS 339 - 6371 7284 ## LGAS_0143 adhesion exoprotein 2 1 Op 2 . + CDS 6377 - 7351 1174 ## LCRIS_01654 mucus-binding protein + Term 7379 - 7414 4.4 + Prom 7396 - 7455 7.1 3 2 Tu 1 . + CDS 7511 - 8617 1494 ## COG0562 UDP-galactopyranose mutase + Term 8641 - 8682 5.6 + Prom 8816 - 8875 10.8 4 3 Tu 1 . + CDS 8915 - 12778 5361 ## LCRIS_00244 protein with YSRIK-signal peptide + Term 12825 - 12870 9.2 5 4 Tu 1 . - CDS 12950 - 13222 235 ## lhv_1524 transposase - Prom 13292 - 13351 4.1 + Prom 13753 - 13812 5.8 6 5 Op 1 . + CDS 13832 - 14668 826 ## LCRIS_00802 hypothetical protein 7 5 Op 2 . + CDS 14689 - 14916 294 ## gi|282931950|ref|ZP_06337415.1| conserved hypothetical protein + Term 15026 - 15058 4.2 - Term 15014 - 15046 4.2 8 6 Tu 1 . - CDS 15051 - 15494 490 ## COG0789 Predicted transcriptional regulators - Prom 15548 - 15607 6.2 + Prom 15504 - 15563 4.7 9 7 Tu 1 . + CDS 15599 - 16633 1280 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Term 16646 - 16693 10.2 + Prom 17782 - 17841 7.4 10 8 Tu 1 . + CDS 18042 - 19217 1643 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 19225 - 19255 2.0 + Prom 19219 - 19278 7.0 11 9 Op 1 . + CDS 19349 - 19780 469 ## gi|256851024|ref|ZP_05556413.1| predicted protein 12 9 Op 2 . + CDS 19834 - 20229 155 ## gi|256851025|ref|ZP_05556414.1| predicted protein + Prom 20377 - 20436 7.4 13 10 Tu 1 . + CDS 20628 - 21065 288 ## gi|297205927|ref|ZP_06923322.1| conserved hypothetical protein + Term 21073 - 21112 8.0 + Prom 21362 - 21421 12.8 14 11 Op 1 . + CDS 21481 - 22359 771 ## COG0583 Transcriptional regulator + Prom 22367 - 22426 5.0 15 11 Op 2 . + CDS 22461 - 22640 367 ## gi|256851028|ref|ZP_05556417.1| predicted protein + Term 22670 - 22722 4.0 + Prom 22999 - 23058 11.5 16 12 Tu 1 . + CDS 23092 - 24546 1423 ## COG0471 Di- and tricarboxylate transporters + Term 24566 - 24615 8.1 17 13 Tu 1 . - CDS 24942 - 25946 742 ## COG1609 Transcriptional regulators - Prom 25986 - 26045 13.5 + Prom 25950 - 26009 10.7 18 14 Op 1 . + CDS 26120 - 26845 755 ## COG0176 Transaldolase 19 14 Op 2 4/0.000 + CDS 26867 - 28540 1920 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 20 14 Op 3 9/0.000 + CDS 28561 - 28992 514 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 21 14 Op 4 . + CDS 28964 - 29452 600 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB + Term 29474 - 29516 7.0 + Prom 29596 - 29655 4.7 22 15 Op 1 . + CDS 29689 - 29886 107 ## 23 15 Op 2 . + CDS 29898 - 31733 1071 ## COG3711 Transcriptional antiterminator 24 15 Op 3 . + CDS 31760 - 32341 485 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 25 15 Op 4 13/0.000 + CDS 32435 - 32818 410 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 26 15 Op 5 10/0.000 + CDS 32830 - 33111 397 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 27 15 Op 6 . + CDS 33127 - 34506 1585 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 28 15 Op 7 . + CDS 34522 - 35667 1197 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 29 15 Op 8 . + CDS 35645 - 36044 81 ## Predicted protein(s) >gi|260196048|gb|ACQN01000019.1| GENE 1 339 - 6371 7284 2010 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0143 NR:ns ## KEGG: LGAS_0143 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 514 1608 1615 2705 2823 283 28.0 4e-74 MGVSKNNFKHKMEESANRVQHFGFRKFSVGLTSVLLSTSLYFGVSNSVAKADTVTDKNNT QVATVNKQQQDNDVEQNSTLTSANLNTSQEKTTAATTTATDASSTGKNESANITQETEQT SSNKEKETTQTAASTTTQVLNKDTNVATQTRYKRDLLEASAVENTAAENEIQVTSDDQRG SVTAGDTVDGQALDPTKFNLVVRYVDADYAKGTGSSSYGGRLLKTKVYAVDGDTTPPIVG LTDGLDFTHYQSNATVTDSYTYDPWNDTNGTYRILTYELDHRTIAIPADLSADLPKGTVI KVSEDGTTYDPNGTAISGIDGIPEARTTEAFSKSLLTNQFTDEVYVTKDGVRRIDRSLST RQQFKVKWNLDLVTGKFDVDSQNSITDLNGKTLAYVGATAKQIPQYPGYKAYFVVNGVRT PATSIAAKSVVVGKDTLTTVNGLKQLTYTEDIVYVADGQILNFKAVDDDENDADITSKIG SAIATQITGDSGQAVDLKQEQSYIDAIRRVLDAQNYQYVSNDALVTTFDDDMSTNQTVTI HFSHKHGDVVESQPITRTINLHQPDGTTVKTEVQNGTATRTNTKDLVTDTVLTYGKWSGG LTQYQIPQIENYVSQVDNNGTRVDQSSIDGTSFSDQDSVPSYDAIDVYYRTVPAYTVVNY KGADGNIIKTENVGGNVGDKKTITADEVPDGYELVPGQDTSKEVTLSGDNPGQPKTPIVF NIQQKVVKVTHDAPKNAGDIIEKSFTYPQGVSEEDLNRTATRTINVIDPTTGKTTTSSET VKFYRDATVNEVTGKIVYTDWQIASDSPQKSWSAFTTPTIKGYTPTIASLDAETPTADTG DKTYTITYQNQTYTTHVTFKDADGTVLRTQTITGVTGTTASVDQKLPAGYKLKDGESIPT SITFNGDPIADKEITLEHIVETLTDKTPDLPNGYTSADFKRTVTRTINVYSTDGQTITKT VPQTVTFTRTATYDKATNQITFGNWSVSDGNANFAEVDADPISGYTATTKASAVTVTEAD GNSTVNIYYTPNDSKVVFEAFDQATGKDVKIDLDSIATNTDLAGKVDSAVSATDASDREA KIKNLLTKLGYQYVENSATPTPSKFTADPQTIKLYFTHQTSETPEDKTVTRKINIPGENG KTIEVTQTASVHRTNTTDKVTGTTTPGEWSEAEFPEYDASQVDGKTTYVDGKETTKVPSE SVKVVNGVPQNGDDVTVTYEANPGTQTIKYVDEKGNPVKFSDSSEDQVISGKVGEIKEVN TTIPDGYELVPGETIPGAIDIKKTDSPIIVTLKAKTVTVTPDKPQNEGSEIPDNPGKTFP KGVSESDLNRTVTRKIIEDKPDGSVTVSDESVKFTRTATVNIATGAVTYSEWTVVPNTNN KFSKYVLGASDQVAGYTASRTMVDESTPSVEAGDQEIHITYAKTDHTTTINYVDETTGNI VHQQVVTGQTGETKDVASEIPAGYTVAKDSSEPTTITFDGNSPATDTKTVKLVHKTTTYT GDEPELPKGVVKTDLQRTVTRVVTVYEPDGKTVQSTKTDQATFKRTLTVDQVTGDFTWSP WTTSDNTTFAAVQGTEKTGYVAQSTPAVTVNENSGDMKIDLYYTPLTQKVTVEAYDNQTG QEVQLTIPAGFGKEITGNTNTDVPAQSLNDYINALKEFFGDKGYTFVSQTTNPTNFGTTD QVVKLIFNHKPVDVSNTDPNAKKTVTRTITIKYPGGKTQEIKQTAVATRTATMDPVTKEV TYGDWTGGFDEYDAPSLPGYKSRVDGNDADKVPSVTFDKTHEPSDANTTIDYYAKPSTQT IKYINDKGEVVNTQVIDGDVGTTQKVTGEVPAGYEVAKGFTVPGEVTIQPSDTPISIPVV SKTVEVSHTDPKNPGDEIPNNPGKTFPDGVKESDLNKTVTRKIIEHKPSGDVTVQDQAVH FVRDAKVNVDTGEITYTEWKVDGDRSQFDEYTLGLDDQVPGYIASRIKIDASTPSENAGD QVIDVDYRPIQTIKFKKMVMMLKFHLRMLA >gi|260196048|gb|ACQN01000019.1| GENE 2 6377 - 7351 1174 324 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01654 NR:ns ## KEGG: LCRIS_01654 # Name: not_defined # Def: mucus-binding protein # Organism: L.crispatus # Pathway: not_defined # 28 322 3233 3552 3552 105 32.0 2e-21 MISGEGSDKVNDKQVYSYVQAIRAELEPRGYEFINYDNIPELIKEIKDGIINIYFKHQTI PVEPGKGKTPEEPVRPGDPDSPNYPEGVDNKDLDTTITRTINVYDENDKILHTEVQKVRY QRTGIVDKVTGKLLGYSDGKSVGTDTWAKYTYDVPAGYQLVDGNGYVVKADEVKVGVNDK DVTLKMKIVPIPQPTPEPTPTPDKPENPNTPETPSEPTKPEEPTTPTEPGKKPQEPKTPD TPVKPEPPAKPAEKKNESKKTPASPLTPEVKSPKKGEAKKITSSTAKLPQTGNNDSSVAG LGIAAMAVASLIGLAGKKKKEDEK >gi|260196048|gb|ACQN01000019.1| GENE 3 7511 - 8617 1494 368 aa, chain + ## HITS:1 COG:glf KEGG:ns NR:ns ## COG: glf COG0562 # Protein_GI_number: 16129976 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Escherichia coli K12 # 2 364 3 361 367 451 60.0 1e-127 MNYLIVGAGLFGAVFAREAANRGNKVTIIERRNHIAGNIYTKKVDGIQVHQYGAHIFHTS NKEVWNYVHQFAEFNRYTNCPVANYKGHMYNLPFNMNTFSEMWGVRTPQEAMDKINEQRK EMAGKEPQNLEQQAISLIGRDIYEKLIKGYTEKQWGRKATELPAFIIKRLPVRLTYDNNY FNDDYQGIPIGGYTKMVEKMLDYPNIKVELNTDFFDKKDEYLNNFDKVVYTGMIDKFFDY KLGELEYRSLHFETEEKNVGNYQGNAVINYTEAEIPYTRIIEHKHFEFGKGDKDKTIITR EYPADWKRGDEPYYPVNNERNNNLYKQYAELAAKQDKVIFGGRLGQYKYYNMDQVIEAAF DAVKKEFE >gi|260196048|gb|ACQN01000019.1| GENE 4 8915 - 12778 5361 1287 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00244 NR:ns ## KEGG: LCRIS_00244 # Name: not_defined # Def: protein with YSRIK-signal peptide # Organism: L.crispatus # Pathway: not_defined # 368 909 1232 1782 1898 173 33.0 4e-41 MKSFFDIKQRFSIRKLSVGAVSVLLGLTFISTAQTVNAATTYTVNADDSIEQTDPVATFW DGSKVFTSPHQISEKIAAYDGGESYVKKSAITVILKSATGEPVTLNENDHVYVTARNYND KNSSFKFDLASLLKNKTITANGQSHTFYVYSYGPSQTHNPAKSRFKNDKRYYKPGQIFYL YPAADYNAKFDAQWAQATASSSDHVFYAVANNPAQGRNTIDEIDVNGTKLPRQTLIFYVT EKPKYDQNASVPAGNYTAEEVAKKLVKNYDNLSNGGVTWTFEGSNNPTDTKTLTSGQAVK LVPHYPGYENTDINKYYDNKSESFGSDISNGKSYLYSDPGKIQSPVKTGDAIEVKVSKDF NSKIDQVPVKGDGKLTDDQKQAVRENIKKANPDLNLTDDQIKVSDDGTTTVSTADGINKT LTPDQTIKRYDLGDPLTTPDFNDQVEKEVIKGNDKLTDDQKQKIKDNIKKANPEMELTDG DITVDDDGTTTVNTKDGSKKTLTPDQTIKRYDLGDPLTTPDFNDQVEKEVIKGNDKLTDD QKQKIKDNIKKANPGMELTDGDITVDDDGTTTVNTKDGSKKTLTPDQTIKRYDLGDPLFD PEFNDQIDKEVVKGDGDLTDNQKQAVKDNIKKANPKLNLSDDQITVDKDGKATVKLDGNV TKTLTPDQTIKRYEKGEPLENTGDTDNFNKNIDKVPVEGQDKLTDKQKEEVKDSIKKANQ NSPIKDIDVKDDGRTIVTFDDGTQVELTPEETIKRFEKGEPLTSPEFNSNIDKVLVKGEG KLTDDQKQAVRENIKKANPDLNLTDDKITVGDDGKATVDLGGNVIKNLIPDQTIKRYDVG DPLISPEFNDNIDKVPVKDGDKLTDDQKQKVKDNIKKANPGMELTDGDITVDDDGTTTVN TKDGSKKTLTPDQTTNRYNLVDPLINTGNADSFNKNIDKVPVEGQRDLTEQEKERIKQNI KDANPNSPIKDIDVKDDGRTIVTLDDGTQIELTPDQTVNRYEKGEPLENTGDADSFNKNI DKVPVEGQDKLTDKQKDEVKENIKKANPNSPIKDIDVKDDGRTIITFDDGTQTELTPDQT VNRYEKGEPLTTPDFNDQVEKEVIKGNDKLTDDQKQKIKDNIKKANPGMELTDGDIIVDD DGTTTVNTKDGSKKTLTPDQTIKRYDLSDPLFYDDTAKDRSANDDKNSDRENNSNTDNDS SKDSNSDKANNSDNHEDQSNNKNAQSINGVKDERDATISSKNDMNVKTNNKQSLLPQTGN QTSSLQTLGLAVLSLLTLSFFKKKKQD >gi|260196048|gb|ACQN01000019.1| GENE 5 12950 - 13222 235 90 aa, chain - ## HITS:1 COG:no KEGG:lhv_1524 NR:ns ## KEGG: lhv_1524 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 1 89 1 89 280 121 67.0 8e-27 MTSIARENNLSVNTVQGVLASCSHRFTDNYNYLPEHLAFDEFKGVDKKLHFICLDGQKYE VVQILRNRYKKSSTLFQSLFNSRTSYNGRH >gi|260196048|gb|ACQN01000019.1| GENE 6 13832 - 14668 826 278 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 8 277 11 292 293 169 36.0 1e-40 MSYHDDKFYGFTNDEIFGSIMQNKRFCKAIIQAVLPDVNVVSVENIDAQKELGTKSDKRS KPVRLDIAVKDQAGNLYDLEMQVNNNHDIGPRMRYYQSSMDRDTLDRGEPYTSLARTYLI FLCAFDPFGKGKLRYSFHLYDDEDKNIQLKNNAENIIINSKGRGTNDVDLLNLQKLMNDD KIEVAGVFKEIQNKIQEYNDDPKRRNLMRTAELRMKEETAVAEKRGREEGREEEQKNTVK VFKALQSNVTVSEGLAWIRANTQVSLSDEEIKAILKEK >gi|260196048|gb|ACQN01000019.1| GENE 7 14689 - 14916 294 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282931950|ref|ZP_06337415.1| ## NR: gi|282931950|ref|ZP_06337415.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 75 208 282 282 99 77.0 5e-20 MRTAELRMKEETAVAEKRGREEEQKNTVKALTATIKEMRPEVNESDLFRQIKKSVSSRFS LSDAKIMDIIRQNLK >gi|260196048|gb|ACQN01000019.1| GENE 8 15051 - 15494 490 147 aa, chain - ## HITS:1 COG:L0247 KEGG:ns NR:ns ## COG: L0247 COG0789 # Protein_GI_number: 15673461 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 2 117 4 120 144 94 41.0 5e-20 MYSIGQVAKMFDLPISTLRYYDKEGLFPDMQRKGNQRIFTEAELECLRVIACMKKSGLEI KDIKQYFDWCREGSSTYKLRQELFLKQRSEIEDEIKKLQATKAMLDFKCWYYDQLIEQKV KDEAELQTKIAQKDMPTPVKKAYELSH >gi|260196048|gb|ACQN01000019.1| GENE 9 15599 - 16633 1280 344 aa, chain + ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 1 342 1 343 348 411 60.0 1e-114 MKAAIFKEKGKMEVVEKAMPELSFEDSAIIRTVRASVCGSDLWFFRGIDQEESGKVTGHE AIGIVEKVGPAVKNIKPGDFVIAPFVHGCGHCAACLAGFEGECQNNPAPFNNHFQAEYFE YNNANWGLVKIPGKPEDYTDEELASFQTLADVMPTGFHAAKMARVKKGDTVVVLGDGAVG LCAILSAKFLGAKKIISTSRHADREALAHEFGATDNVAVRGDEGVKQIRELTNGAGADAV LECVGSELSMDTAVKVARAGAMIGRVGVPHDEKLDSNQLFFGNLGIQGGPASVTTWDRKY LLDAVLKHEINPGRVFTAQFKLDDIQKAYEVMDQRKAIKSLLVF >gi|260196048|gb|ACQN01000019.1| GENE 10 18042 - 19217 1643 391 aa, chain + ## HITS:1 COG:SP1544 KEGG:ns NR:ns ## COG: SP1544 COG0436 # Protein_GI_number: 15901387 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 389 1 390 395 387 48.0 1e-107 MKLSKRIQTVTPSATMALSSRAKELAMQGKDVINLSIGEPDFNTPSFIGQAAIKAISENL TDSYTPAGGLPELKQKIAERINSEHKTKFSSQNIAVTTGAKYALYALAQVLLNPGDEVLI PLPYWVSYGEQVKLAGAKPIFVKPEKGLKVTPADLQKYTHNSTKMLIINSPNNPSGQVYT KAELIAIGKWAAERQITIIADDIYGKLIYNQTQFTSLFDLDEEIRKNVVLVDGLSKTYAM TGWRVGYVAGDSNLITALNSLLSHSTSNLSAVSQYAALAALTGEQACVENMRQEYENRLN NLAPLLDGVEGFKLIEKPQGAFYFFPDISEALKLTGYKTANDFALALLEKEGVATVPGEA FGYPEHLRISYAADLDRIKEAIERMNKFVNK >gi|260196048|gb|ACQN01000019.1| GENE 11 19349 - 19780 469 143 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851024|ref|ZP_05556413.1| ## NR: gi|256851024|ref|ZP_05556413.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 143 1 143 143 244 100.0 1e-63 MKNNLFRRNTAMVLTSLVLSAGVVTAMPKQALAESNESATSTEKQGASLVNNKGVGVYSE EHAGLKHGTAIQTNQNPELQSTSSSILDLDKSQGKFYALANVENTTDQEQHFVQAIVLPK FYKGSNSDINKVDIQILIKLMLF >gi|260196048|gb|ACQN01000019.1| GENE 12 19834 - 20229 155 131 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851025|ref|ZP_05556414.1| ## NR: gi|256851025|ref|ZP_05556414.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 131 15 145 145 241 99.0 1e-62 MQYAIKPGKYRNLDRLARENPGFTWDQIIGIKIDAYLAPKQNFSGKIPLTVANYNQMQDQ LSALANNNAENSIISNINLRQFSVGQSFYYYTNGEIQTTYDGHLTARVGKEVTKLEKIIS QANLKKIELKL >gi|260196048|gb|ACQN01000019.1| GENE 13 20628 - 21065 288 145 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297205927|ref|ZP_06923322.1| ## NR: gi|297205927|ref|ZP_06923322.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] # 1 145 394 532 532 167 90.0 2e-40 MLKAEVVTYDPATMALTSKHVLTEAEYAVKDNVNTNKAGVSSVKYSYKINDNDIVTKTAK VTVLDKKTKAEDSSSSSSSSSESVNSSSESSSSSYITDKTSSQSVSQKSKSTKRLPETGT TTALAIVTGTIAIICSILLTKKNKK >gi|260196048|gb|ACQN01000019.1| GENE 14 21481 - 22359 771 292 aa, chain + ## HITS:1 COG:lin2250 KEGG:ns NR:ns ## COG: lin2250 COG0583 # Protein_GI_number: 16801314 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 8 253 2 246 284 87 28.0 2e-17 MVLTSLFDYRLKALVVLVRTKSFTLTAKELFISQPAVSQQIHSLEKDLGFRLFYRSGKSI ELTAKARELVAYVQRINSDSSRVLAEIQKDDKKRLSIGASLSLSSFLLPNLLAKTINDEK TPKVDIANTKQLLEKIKLGELDFALIEGNFDKSEFDFFKLSDYPMTLVTNPRTYPVEQWS DILKQPLFIGMEGCGTRDIFEKLLAAHNFALSDFKNVIEVDNPVTVIEMLKQGEGVSFLY RQLICDELKRNELLEITAIPEFNVEHSINLVFAKGSSYKERYQQIATLVKHL >gi|260196048|gb|ACQN01000019.1| GENE 15 22461 - 22640 367 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851028|ref|ZP_05556417.1| ## NR: gi|256851028|ref|ZP_05556417.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 59 1 59 59 63 100.0 6e-09 MSDKLTGKAKEVEGKLTGDKAREAQGKAEGLLGKAKEKINDVKEDVKDKAKEIKEKLDD >gi|260196048|gb|ACQN01000019.1| GENE 16 23092 - 24546 1423 484 aa, chain + ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 7 484 5 472 472 451 53.0 1e-126 METFEKVKWKQFILPVVIGLLIWFIAPVRPTGISIDAWHMLAIFIATIVACITQPMAIAG VTLIGFTMTVCLGLAPIADVMKDGKVIQKGALSAFSNSSAWLIVMAFMISRGIIKTGLGR RIALYFIKWFGKKSLGLGYAIGAIDLITSPATPSNGARAGGIVYPLINSLANTFDSHPND DSRKKMGAYLVFTEFQTNVITSSMFMTACAPNLIAVSLASKAGINLNWMGWLAASVVPAV ICLLIVPYLVYKLFPPQVKETPNAKEWANEHLQEMGKMTAPEKVMALIFAVTLILWMLSS SIKLDATVVAFISLTLLLLFGILSPKDVLKETGAWNLLIWLSILVFMAGKLTQFGFIAWL SKEIEVSVKGMNWLLVLVILALILFYTHYLFASATAHNTAMYLPLLIVAVSAGAPKVLAA QFLAMFSAIMGSTTHYSSPASSVLSASGYVTQKEWWNLSFIFGLLYILVYGIIGLLWMKL IGMW >gi|260196048|gb|ACQN01000019.1| GENE 17 24942 - 25946 742 334 aa, chain - ## HITS:1 COG:BH3727 KEGG:ns NR:ns ## COG: BH3727 COG1609 # Protein_GI_number: 15616289 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 6 333 3 321 331 169 33.0 9e-42 MKNNLSIRDIAKLSGVSVSTVSRVLNNNGRYSEATKEKVLKIAKENGYRPNSLARNLRKQ ASTFIGIIVPDISNEFFAKIVKDCEQLLFSIGYLAIVCNTERNPELEKRYIEKLSNHMVA GFIIISTNATTIRNLNLTLPIVYIDRTPNLGENSISVSSDNYLGGKIATKYLIRSNADPY MFITKTIKQSTTEDRISGFKDVLIKENIEGNRIFSLNTTSDCVFSDLREIRKYLDTLIEK RKKIGIFAINDKVAAAILKVAISKKIKIPEELSIIGFDDISISKTAAMPITTISQNTSSI SSQAVNALFECLNKNIQISRKIVIPIELIKRATA >gi|260196048|gb|ACQN01000019.1| GENE 18 26120 - 26845 755 241 aa, chain + ## HITS:1 COG:SPy1947 KEGG:ns NR:ns ## COG: SPy1947 COG0176 # Protein_GI_number: 15675749 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Streptococcus pyogenes M1 GAS # 1 241 1 238 243 259 55.0 3e-69 MNIKDLNVEIFADGAVIDDMVKAQKTGVVKGFTTNPSLMKKAGVTDYMKFAQEALSKVKD APISFEVFSDDFKTMEKEAEKISNLGSKVFVKIPITNTKGESSINLIKKLNEKGIKVNVT AIMTLKQVESVLRVLNPNVENIISVFAGRLADIGIDPIPVMRQCVELIADSQNSRKTKLL WASCREVFNIFEADKLGVDIITCTAPVINKLGLIGKTPEERSLETVKGFNEDVKALGFSI L >gi|260196048|gb|ACQN01000019.1| GENE 19 26867 - 28540 1920 557 aa, chain + ## HITS:1 COG:lin0774 KEGG:ns NR:ns ## COG: lin0774 COG3716 # Protein_GI_number: 16799848 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 289 556 11 283 292 198 40.0 3e-50 MLVSAILVAILAIISQWWFFAPATRCMTYPLTTGLLVGIAMGNPMLGMLAGANIQLVYLG WINTGGVMPSNTMVAGIYGTALTILSGANPKLAVTFAIPFSLLGLLMVQIYQTINSFWVH KADKALENGKIEQIRFLNYVPSFIISAIVYGIPAFLLVLLGKNWATGMVKIIPQNLTIAL EVVGGIMPALGIAMLLNYLGKRSLVPYFFIGFFLTAYLKLEIMAVAIFSALIAYLIFEAT KQKKVEKVQKKTVRRLTLNNRTGENIQSESNSLGDNGTTEISAADYKVKLTKSDLIKTWL WEQSDEATYNYERLQALGLTNMMIHSIKKLYPNDRQKQAQELKKYMVFFNTEPHMIGPVI HGIALSMEEARANGAAVTADDINGVRTGLMGPAAGIGDTVQQGIIFPILASIGCSMALEH NFLGPIFFTVIFEMLIYSIGYWMFMYGYKKGKKSVLSILKSGILDKVTNAFSIVGLMVVG TMAATRVTIQSPLIWRVGQSTIKLQSILNKLAPGILPLAITCLVWYLLKKKVNATWIIVG IFIVGILFSYLGIFGIK >gi|260196048|gb|ACQN01000019.1| GENE 20 28561 - 28992 514 143 aa, chain + ## HITS:1 COG:SP2164 KEGG:ns NR:ns ## COG: SP2164 COG2893 # Protein_GI_number: 15901974 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 3 130 6 137 143 66 33.0 2e-11 MDILLISHGPFCNGIKKSLEMISGNMENVTSEEFKPGQNPSDFRNILAKRVEDLYNPEKG LIVMCDLKGGTPYNTILYLVKDYPKLKIITGMNLPLLLTIASSEDIDLPTILNNKLNIGI NLIDKKVIEKGSRRHERLSLSKN >gi|260196048|gb|ACQN01000019.1| GENE 21 28964 - 29452 600 162 aa, chain + ## HITS:1 COG:STM3771 KEGG:ns NR:ns ## COG: STM3771 COG3444 # Protein_GI_number: 16767055 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 158 1 160 161 102 34.0 3e-22 MKDLVLARIDDRLIHGQVMTKWLKSTQAENVVIVDDDVSKDDFMINVFESAVPDNIGIGV FNKQDAVKFFSEPLPGPTILLVKVPQTIKYMIDNGIDIPEVDLGGMGARQDRKTLYQYIS TNEDEDQVFLDLVKQGVNVFVQIVPQNDKLPIKPLIDRKQNS >gi|260196048|gb|ACQN01000019.1| GENE 22 29689 - 29886 107 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNERIRLIVSLLLTKPDIKTMEMMQELNLTRKQVNYAIKILNFHLYELGVTPIKRKMADL NFLLK >gi|260196048|gb|ACQN01000019.1| GENE 23 29898 - 31733 1071 611 aa, chain + ## HITS:1 COG:lin2817_1 KEGG:ns NR:ns ## COG: lin2817_1 COG3711 # Protein_GI_number: 16801878 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 17 455 90 530 536 156 26.0 1e-37 MSNDKNRKGISSFDNNERLYLLVAYLLANPGYVSLIDLTEFLHYSRTTILTDISKAKSFV KKYNIEITYDRTKGYSLNGSSDQQMKIANHLIFENMELVSRDDFEMAISNNKLIKFVKIF IIQFEKEFKAKFSDSYFDSLVILIAIILLRNCGKNFIGVEADSFVEQTYEYKYIKNYLQT HGKNIQIGWLKWITIEFLSANVYLKQKIQLNENDRKIVTFVHQMVESFKSQTLVDIPNQM QFEHRLVNHLRPACFRVKYDLSTIAIVNMNIDENTKILADIIHQQIKPVEEWLGTPFPEA EIKLLAVYFGTNLIDNISTSTDLPRYHAVVVCSNGIILSQILMKELKKLFPELKIILALS AREFTETNLDFDVVFSTIPLSTTKKQYIITPNMSNQRKVELRYRVLNDLGISKLDSKVDD VIDVLKNYISSSEITKLREKIRLALVDTDEIGVNKSLPNLMYYIDKDAIILKNEFISWSE AIDLSTKPLMNKHKITQGYVDILKKDTDTPTNYSFLGKSMAIPHSKPENGVYSDGIGFLV SRKGILFPGGRVIHLVVPIAVLEGKKHYKAINQLAKIATNEKVIKKFLKADSTEDVYSIL ASYVESGDDKK >gi|260196048|gb|ACQN01000019.1| GENE 24 31760 - 32341 485 193 aa, chain + ## HITS:1 COG:CAC0394 KEGG:ns NR:ns ## COG: CAC0394 COG0800 # Protein_GI_number: 15893685 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Clostridium acetobutylicum # 26 193 42 205 208 108 38.0 5e-24 MRGYGLEEARCIVEAAKDFSKEIAFEVTMNTSNAPEIIRKLNKEFGKQQVIGAGTVLSFE QEIEAIDAGAQFILSACPFTKEMVEYAKARGVLTVPGVFTPDEALKMKKLGVDIIKIFPA SIVGPSYFSAIQEPLDKLSLMAVGGISASNCHEYLTHGASYVGIGSKAFDPKNIKQQNYK KIREDIRNLVDSI >gi|260196048|gb|ACQN01000019.1| GENE 25 32435 - 32818 410 127 aa, chain + ## HITS:1 COG:lin0503 KEGG:ns NR:ns ## COG: lin0503 COG1762 # Protein_GI_number: 16799578 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 1 122 27 148 155 82 38.0 2e-16 MAKRLQEKGYVTSDYEQALLKREKEFPTGLPSSQPIVAIPHANSDLVNKTTIEVATLKTP VIFYNMGSINEKLEVQIVIMLAISEPHGQIEMLQKIVGIVQNQELRERMLLSKSNQELKN LIVQALA >gi|260196048|gb|ACQN01000019.1| GENE 26 32830 - 33111 397 93 aa, chain + ## HITS:1 COG:STM1613 KEGG:ns NR:ns ## COG: STM1613 COG3414 # Protein_GI_number: 16764957 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Salmonella typhimurium LT2 # 1 93 1 92 93 74 43.0 4e-14 MAKRILVACGNGIATSTVVATKIRNYLTENGIDAETTQTKLMEVPGKVSNYDLLVTTGQF GGDAHGVPYVPGMPLLTGIDEEKTLERIKEILS >gi|260196048|gb|ACQN01000019.1| GENE 27 33127 - 34506 1585 459 aa, chain + ## HITS:1 COG:Z4877 KEGG:ns NR:ns ## COG: Z4877 COG3775 # Protein_GI_number: 15804015 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Escherichia coli O157:H7 EDL933 # 3 407 12 417 462 306 41.0 5e-83 MWSQIGQGFMNGFQFFINCGATVMLPVIITIVGLIFGLKITQAFKSGLTLGIGFAGIKLV LDFMTTNVGPAAKAMVERTHVHLNALDVGWGSIAAVTWASPIIAILIFVILLINIVLLVL KLTHTLDVDIWNYHHMAIVGIMVYFVTHNVFLGVGATAVTAIFTFKLSDWSQPIVEKFFG MPGVSLPTISALSSLVIAVPMNWLLDKIPFFKNSKFTIKDAQKYLGFFGDSMIMGLIIGL AIGGLAGYDLQKVLQLGVSMSAVLVLIPKMTAMFMEGLMPISSAAQKWSQNKFKGRKLFI GLDAAVVVGNPDVITTALIIIPLTIAMAIFLLGNRVLPFADLAVVPFRVALVVVLTNGNL LKNIVIGLVVTASLLWCGSATAPVLTAIAKSVGIKLTTGGSMLISSFAATSMIQSFIVYF AFTYHPEICVPILLLIIAGIWYYYDKIKKINVSIDENKN >gi|260196048|gb|ACQN01000019.1| GENE 28 34522 - 35667 1197 381 aa, chain + ## HITS:1 COG:SMb20510 KEGG:ns NR:ns ## COG: SMb20510 COG4948 # Protein_GI_number: 16264240 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Sinorhizobium meliloti # 1 381 1 382 382 474 58.0 1e-133 MKISNITVYKVKPRWIFIKIDTDEGISGWGEMVSGTKTETVVAGAKEMGNRILGKNPFDI ERIWQRLHRSFFRGGPINGTIISGIEMALWDIKGKALNVPVYELLGGAARDRIKVYSWIG GDRPSDVVEMAQQRWDKGFRAVKMNATSEMHYIDTLDKVDAAVERVASIREKFGDKMSIG IDFHGRVHKPMAKVLAKALEPYRPMFIEEPVLPENEEYYEQIANEVSVPIATGERVYTRW GFKNIFKQGAVDIIQPDISLCGGLLEERKIAAMAEAYDMAIAPHAPYGPVALAATFQVDA CTPNMFIQEQSLGIHYNQGFDLLDFVKNKKIFQYKDSFVDIPKGPGLGIEMDEDKIKDVA QQGLVWTNPAWENYDGTIAEW >gi|260196048|gb|ACQN01000019.1| GENE 29 35645 - 36044 81 133 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEQLLNGNFNEYIAILIFAFILIFSYTLNSLKIKLREKINFFHIYVVLMIVIIIIWKLWP DVWLQKIETITIIVLLVFFSIMPEGLSDKAIIKVGVFDGSFTKFKELAIENISSKKCTKI IFYLRTNASISMI Prediction of potential genes in microbial genomes Time: Wed May 25 13:58:02 2011 Seq name: gi|260196047|gb|ACQN01000020.1| Lactobacillus jensenii 115-3-CHN cont1.20, whole genome shotgun sequence Length of sequence - 20295 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 9, operones - 4 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 221 - 1033 917 ## COG1737 Transcriptional regulators - Prom 1172 - 1231 7.8 + Prom 1078 - 1137 10.0 2 2 Op 1 3/0.000 + CDS 1187 - 1885 673 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase 3 2 Op 2 . + CDS 1888 - 3870 1898 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 3890 - 3940 8.0 - Term 3878 - 3926 8.6 4 3 Tu 1 . - CDS 3957 - 4781 439 ## COG0583 Transcriptional regulator - Prom 4852 - 4911 8.1 + Prom 4769 - 4828 5.0 5 4 Tu 1 . + CDS 4911 - 6377 1428 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 6390 - 6424 3.0 + Prom 6394 - 6453 9.3 6 5 Op 1 2/0.286 + CDS 6477 - 7454 517 ## COG1609 Transcriptional regulators 7 5 Op 2 13/0.000 + CDS 7477 - 8490 724 ## COG1609 Transcriptional regulators + Term 8534 - 8564 2.0 + Prom 8534 - 8593 7.0 8 5 Op 3 6/0.000 + CDS 8690 - 9616 808 ## COG0524 Sugar kinases, ribokinase family 9 5 Op 4 9/0.000 + CDS 9616 - 10011 499 ## COG1869 ABC-type ribose transport system, auxiliary component 10 5 Op 5 2/0.286 + CDS 10021 - 10542 208 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 11 5 Op 6 21/0.000 + CDS 10626 - 11510 193 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 12 5 Op 7 16/0.000 + CDS 11512 - 12468 1051 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 13 5 Op 8 . + CDS 12489 - 13475 1192 ## COG1879 ABC-type sugar transport system, periplasmic component + Term 13492 - 13546 9.0 - Term 13484 - 13527 3.2 14 6 Tu 1 . - CDS 13550 - 14257 597 ## COG2188 Transcriptional regulators - Prom 14334 - 14393 6.1 + Prom 14290 - 14349 8.0 15 7 Op 1 8/0.000 + CDS 14379 - 15740 1090 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 16 7 Op 2 . + CDS 15754 - 16398 684 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 17 8 Tu 1 . - CDS 16369 - 17853 1268 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 17892 - 17951 7.6 + Prom 17686 - 17745 7.1 18 9 Op 1 2/0.286 + CDS 17966 - 18862 721 ## COG0583 Transcriptional regulator 19 9 Op 2 3/0.000 + CDS 18934 - 19926 809 ## COG1609 Transcriptional regulators 20 9 Op 3 . + CDS 19974 - 20295 56 ## COG0366 Glycosidases Predicted protein(s) >gi|260196047|gb|ACQN01000020.1| GENE 1 221 - 1033 917 270 aa, chain - ## HITS:1 COG:L192289 KEGG:ns NR:ns ## COG: L192289 COG1737 # Protein_GI_number: 15673158 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 13 270 14 272 273 194 39.0 2e-49 MNLLKELRNVDHFTKTEQRLLTYIDTNPEKIIYGTIKELSRNAGVGEATIIRLCKKLNLS GFSDLKIELAKDSLTSPPSHIEKESYLTTSANLLKDAITKTEKLVIESDINKAIRILSNA KSIYLFGVGHSGESARDYAKTWFRVGLVAHAEVDPHFQVQIASFLNSKDVVVALSLSGHT KDIYDSVRLAKKRGAHIIVITNDFTSPIAKLADVTLRTAVSEFLNIGSVSGQVSQLYICE ILAKGYENYNHIDTTKLKERALKAIMNKSM >gi|260196047|gb|ACQN01000020.1| GENE 2 1187 - 1885 673 232 aa, chain + ## HITS:1 COG:SP1330 KEGG:ns NR:ns ## COG: SP1330 COG3010 # Protein_GI_number: 15901184 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Streptococcus pneumoniae TIGR4 # 3 229 7 233 233 296 65.0 2e-80 MKKEDFINQVKGGLIVSCQALPGEPLYSETGGIMPLMALAALKGGAVGIRANSARDIKEI KAKVDLPVIGIIKRDYPPEEPYITPTMKEIDELVKTKVDVIALDCTLRKRHDGKTVSQFV HEVKEKYPNQLLMADTSNFEEGKNAFEAGVDFVGTTMSGYTAESRHLDGPDYQLIEDLVK AGIPTIAEGKIHQPDQLAKILKMGVLAAVVGGAITRPLEITQRFVKAIKEEE >gi|260196047|gb|ACQN01000020.1| GENE 3 1888 - 3870 1898 660 aa, chain + ## HITS:1 COG:SP1684_1 KEGG:ns NR:ns ## COG: SP1684_1 COG1263 # Protein_GI_number: 15901519 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pneumoniae TIGR4 # 1 419 1 420 422 462 58.0 1e-130 MFKKFSQLGQAFMLPIAILPVAGLLLGIGGALSNDAAVKAYPWLNQAWLQTCLKVMNFAG NAVFANLALIFAIGLAVGLATNDKGTAGLAGGVAYMVYTATISGLLQLFSPKNTIDTGVV GSIVIGMLVAYLHNKYRKIELPQFLGFFGGSRFIPIISSICAIFIGAIFFLIWPPIQGWL TIAGKAIAGMGSLGTFLYGFLLRLTGAVGLHHTIYPMFWYTALGGTATVAGKTVVGAQNI FFAQLADPNFHGLFTYGTRFFVGRFATMMFGLPGAAAAMYLCLPKKNRQKDGGLYLSGGL TSFLTGITEPIEYTFLFVAPWLYVIHAFLDGLSFYFADIMNIRIGNSFSGGFIDYLLFGV LQGKDKTNWPNVLLLGVVWFFLYFAVFTFCIKKFHVAIPGMQDDVDADAILAEGPKTGNK LHDESMQIISALGGAENIGTVSACATRLRVSVKDKNKVDDKVFKALGAPGVLKVADGIQA IFGGKADLYSQEINEILASNLFVTSAKSDIKVFAPVEGKVIELEKVPDEVFSKKLMGDGY AVEPRNGKVYSPVNGKVSSIFKTKHAIGLTTDTGLEILIHMGLDTVELEGKPFKVHVKEG DNVIPQTLLAEMDLEEIKDAGKNPTVLVIFTNLKESNKNLKVHFINQVVQPQDEIGRIEE >gi|260196047|gb|ACQN01000020.1| GENE 4 3957 - 4781 439 274 aa, chain - ## HITS:1 COG:AF2127 KEGG:ns NR:ns ## COG: AF2127 COG0583 # Protein_GI_number: 11499710 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Archaeoglobus fulgidus # 5 196 13 215 324 76 29.0 5e-14 MYKELETYLSVVQNGSFSKAAKELYISPSAVFQQINNLENHLGVKLLIRTSHGVKVTEAG MILVRRGQEILNLCKQTQSELKYFKKQITLGAGFLTQNLEFQKLIKGSQINVSISFAEVK DYNSISDTVDLLETIYTPGLAKQGFSFQKISEIPLAIAIAPNCKLKSKKRISEQDLSNYT ITVIKHGLSSSTDEAVKYLKTNKHLKIIELSQYNHSFIDFCQLNNTLMLVPKCWKKSCEP YILKDLDKKFLLDYGYFYRKNKIKILDELMMTLE >gi|260196047|gb|ACQN01000020.1| GENE 5 4911 - 6377 1428 488 aa, chain + ## HITS:1 COG:L137630 KEGG:ns NR:ns ## COG: L137630 COG1053 # Protein_GI_number: 15673106 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Lactococcus lactis # 2 456 57 469 502 118 24.0 3e-26 MENYDLIVVGAGSSGISAALTAAEAGLKVALLEKGDKFGGAGMFGAQGLFGANTELQKES GVDYSVKDAYEEILNYTHHRSDARIVKAIVKESAETLAWMSKNGLETELVTNTQEVHQNH PRTYHQYIDKFNGFEKMINKFKDLGGSLFLKTSAKKLLQDNGYLSGIEINYDGTDECLNT KNVILADGGFIGDKDLVKKNVNIDLNNLYSMGERKATGDGLRMLGEIGGVNNYKPLLENH AASIVTNDKNPWENASLATLSTLPLLWVDNSGKRFTNEDVVYDFALWGNVTYTAGGYYYI IIDQDFVDYISKNELDWTGSFERTFTLLQHLPMTHKVGPMKTLKQELETTLTSKAVFKAN SLAELAKLLNIDENNFVETINQYNKLINKHADEDFYKDQKFMKFPICNGPFYALKAISTT LGTVGGGLVNEKFQALTEARKVISGVYVVGNNAAGMFDSAYPTIEGLSNGFAWNSGRIAA KTIINLNK >gi|260196047|gb|ACQN01000020.1| GENE 6 6477 - 7454 517 325 aa, chain + ## HITS:1 COG:BH3692 KEGG:ns NR:ns ## COG: BH3692 COG1609 # Protein_GI_number: 15616254 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 6 289 3 298 337 82 23.0 8e-16 MTKKFTMQDIAEIANVSKSAVSIAINQNSGISDDTRKKILKIATELGYEKSSSNLSFEKK LRTVCFFMAVEDIQQNNFFFLRDAVEKKGKQLGIKISFKLLPENKLIYQSEAICRKPSIF LATNFSSKLVKTLQAKFKYCVFFDVNLATIAANFVAMDNFQEAYSIVEYFYKKGCRKVGY LGARTLNGNFAERRYGFNSAISDFNLSFTNSDFIVGSLSNEVIDSQEIAQIRKMRNLDAF LCESNCQALRLTKELQILNFSVPNDVIVVGFTNLLDSKYRFLNTAKNQYFLDQMLNQAIS QLQNMINDVNWNPQRSLVSWEFTFS >gi|260196047|gb|ACQN01000020.1| GENE 7 7477 - 8490 724 337 aa, chain + ## HITS:1 COG:BH3230 KEGG:ns NR:ns ## COG: BH3230 COG1609 # Protein_GI_number: 15615792 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 3 336 4 350 358 127 28.0 4e-29 MKIKMSDIAKKAGVSIAAVSLVLNGKPGVSEKTRKKIFRIIKESDYIPLRQKRESTRVIA NVNLIIISDQHGVVNEMYQKNPFFDTLVQCTAEHIDKFGGTLQINTVKIESLHEEINRII SRTTVVNAIVLATDLDENDIDFIENKIKNVVFVDTSFRKLKADFVTPDNYQGAYEAGMFL LNHNYRRIGYLASNKATQNFLSRREGLRDSLATQNLKLAEKDFYVVDFANLFSKNSLNSI NFNDLPEAFFCENDIIAIRLIKELTHRNILVPRDIGVMGFDDVSTAALCSPELTTVHIPT IQIVEQAVRDLQAQVASKEFKGQKTFITTEIIEREST >gi|260196047|gb|ACQN01000020.1| GENE 8 8690 - 9616 808 308 aa, chain + ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 1 302 1 303 304 252 49.0 6e-67 MKNQVCVLGSINLDTTFHVERIPLPGETVSVFDKSSAPGGKGANQAVAAARSGAKVHFIG AIGDDNSGQKMLESLKKDSIDLTNINKSDKAGTGTATIMLDQNGQNSILVYPGANKEINL TQIKNAESLISSMDFIVAQFETPIKETTLAFKIAHKHGVVTVLNPAPANYISDELLAETD IIAPNETESFAITGIKADSLSSMNKSAQYFKDKGVKVTLITLGDKGVFYSYENQAKIVPA YKVKAVDTTAAGDTFLGALSAVLKKDLSNLEAAIDYGEKASSLTVQKNGAQPSIPTYSQI NKFYGGEK >gi|260196047|gb|ACQN01000020.1| GENE 9 9616 - 10011 499 131 aa, chain + ## HITS:1 COG:SA0259 KEGG:ns NR:ns ## COG: SA0259 COG1869 # Protein_GI_number: 15925972 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Staphylococcus aureus N315 # 1 131 1 134 134 133 57.0 8e-32 MKKIGVMNSDISRVIADMGHMDWLSIGDAGMPVPKDTEKIDLCVQSELPSFIDVLKNVLI EMKVQKIYLAEEIKEQNPNQLRNIKAVLPYVDIEFVPHKDLKKMLGNTHAFIRTGETTPY SNIILESGVTF >gi|260196047|gb|ACQN01000020.1| GENE 10 10021 - 10542 208 173 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 3 172 1 165 305 84 31 4e-19 MRVTMKIEMTGIKKAFGANHVLKGVDFTINSGEVHALMGENGAGKSTLMNILTGLLNKDA GSIKVDGKETSYSSALEAEHAGISFIHQEMNNFPDMSVVDNMFLNKEIKSTFGLMNQRAM IKQATEYLNHLGANINVTKKIGDLTVGQQQMVEIAKSLMTDAKIIIMDEPTAL >gi|260196047|gb|ACQN01000020.1| GENE 11 10626 - 11510 193 294 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 35 280 10 248 329 79 26 2e-14 MEELWEICDTVTVMRDGVSINTYKIKDVDENQIVHDMVGRDIGDYYPIRNPELGTVALKA ENLCGENFKNISFEVHEGEVLGFSGLMGAGRTETMRALFGIDKLISGKIYVHGKEVHIKD PSDAVALGIGFLTEDRKTEGLVLDQSLRDNIALPSIEGFKKHGIIDEKTENNFVNMLMKR LTVKAENPFVTAGSLSGGNQQKVVLAKWVGSGAKILILDEPTRGVDVGAKKEIYELINQL TDRHVAVIMISSDLPEVLSMSDRIEVLYEGKQMGIIDAKDATQEKIMKLATGGK >gi|260196047|gb|ACQN01000020.1| GENE 12 11512 - 12468 1051 318 aa, chain + ## HITS:1 COG:BS_rbsC KEGG:ns NR:ns ## COG: BS_rbsC COG1172 # Protein_GI_number: 16080648 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Bacillus subtilis # 10 312 19 319 322 295 56.0 1e-79 MDKARKKLDLSKYMALIALIILVVLITFLNPQFIAPSNLMNLLRQSSINCLIAFGMTFVI LTGGIDLSVGSVLAFTGAVAATLILSGTPVWLACIACLILGAILGGVNGFLISYGKVTAF IATLATMTIWRGATYVFTGGNPITGPNMNNSFFFQFIGNGYLFGIPFPVIITLLIFAAVY ILLHKTAFGRKTFALGGNEKAAFVAGVKTKKIIVLIYIISGVLAALAALILTSRLSSAQP DAGSAYEMDAIASAVIGGASLMGGKGRMQGTLVGALLIATLSNGMNLLGINSFYQQIVKG LVILVAVMIDSQSQKKNG >gi|260196047|gb|ACQN01000020.1| GENE 13 12489 - 13475 1192 328 aa, chain + ## HITS:1 COG:BS_rbsB KEGG:ns NR:ns ## COG: BS_rbsB COG1879 # Protein_GI_number: 16080649 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus subtilis # 53 321 37 305 305 269 53.0 5e-72 MFFNHISKNITKIATIGSVLVMGGGLLGGCGATGLSTDSGSSTSKVEKKAPSKLKIGVSI STLSNPVFITLKNELQKYSDKKGSKIIINNANNDTSKQNNDVEDLIQQKVDAIIVNPCDS SAISTVIQKANDAKIPVICIDRGADRGTVVSTVASDNVAGGKMAANFLIKKLGLKAKIAE LQGIPGASATRERGEGFDKIADKKLDIVSKQTAQFDRAKGLSVTENILQAHHDVKGIFSQ NDEMAVGAARAVKASKKNIIIIGFDGTNDALKLIKSGQITATIAQQWDKMADTSLDAVYD YYQGKTVKKNNLVPVRLITKENVDSMLK >gi|260196047|gb|ACQN01000020.1| GENE 14 13550 - 14257 597 235 aa, chain - ## HITS:1 COG:lin0901 KEGG:ns NR:ns ## COG: lin0901 COG2188 # Protein_GI_number: 16799974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 235 1 235 237 150 38.0 2e-36 MKKYEQIATEIERKIISGEYKDFLPQQKDLAYEHQTSRVTISHAFKLLKDRKIIRPVKGH WTKIKSKNISKLLIDSDANKSNGFTHHSLGGGIVKSHIISFDQRIPTEEECQALQLKKDD LVYDIIRQRLLNDVPAKLEYTIMPVKVIPGITKDILHNSIYGYIRDDLHLNFGKANRIIT AEKSDAYDMKYLECSKDDPVLCVRQIKFLDNNIPFEYSETRNKYNHSSLTIYDSK >gi|260196047|gb|ACQN01000020.1| GENE 15 14379 - 15740 1090 453 aa, chain + ## HITS:1 COG:L32812 KEGG:ns NR:ns ## COG: L32812 COG2723 # Protein_GI_number: 15672801 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 2 453 7 452 453 469 51.0 1e-132 MKKFFGGNSTSSMQTEGGWNEDGKSKSVYDIRSETETSSDWKVANDNYHNLSEDLDLMKN LGLNMYRFQISWSRVIHDGDGDINSKGLKYYDQLVQGLLDRNIEPMICLYHFDMPLKLAY EGGFLNKKVVNDFIRYGKIIINHFKDKVKYWITFNEQNLYFQPGATRYAVGVDLGRKETI EDIYQISHNIMYAHACLANYLHDTSNNKIGGMLAYAATYPATCNPSDQLLVARFNEFVNN SLLDAFVKGSYSPAVVSFVKEHHLKLNITDNEIEEIRKLKSDFLAFSYYRTDVIDASKVP IDVAPNYYLEYGKIRNKYTRSNYWNWNIDPQGFRKVMDDIYYRYRLPVFPIENGIGLIEH WDGQHTIDDQIRIDYMRDHINELKKAQKEDGVEVLGYLGWGLIDILSSSGNMDKRYGVVY VNRSNHDLKDMKRIPKKSFYWLQNVIKTNAEFI >gi|260196047|gb|ACQN01000020.1| GENE 16 15754 - 16398 684 214 aa, chain + ## HITS:1 COG:SP2022 KEGG:ns NR:ns ## COG: SP2022 COG1455 # Protein_GI_number: 15901843 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 5 201 1 197 431 245 65.0 4e-65 MNNTMQNSKLMQGFTKFAVKLGNQIHLRSLRDAFATIMPLYILAGLAVLLNNTIFTWIFK GKTLEQVQYWGVVITNGTLNISGILIAGLIGYQLAKNRKFTNPLASAMVSIATLIVMMPN TVQVIPDAAKKAVSVSAVMPFNNLGTGAMFSGVIVGLLATEMFVKLSQIKALHINLGQNI PPAVGQSFDVLIPVLIVISFFPRLFLILCCIFPS >gi|260196047|gb|ACQN01000020.1| GENE 17 16369 - 17853 1268 494 aa, chain - ## HITS:1 COG:L137630 KEGG:ns NR:ns ## COG: L137630 COG1053 # Protein_GI_number: 15673106 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Lactococcus lactis # 7 492 58 495 502 129 26.0 1e-29 MTKEIVKTDVLVVGAGDSGMMAAAAAREAGAKVILIEKENKIGLMRLSNAAINSNAQKRA GVSINKSELVEYLASFAQHNVDQKLLNIWADNSSETVNWVEDNILRPNGAHMRSEPDAMV TSPIYKGFPTENDSTIDDKSYVSYGAWFQEWLINHNIDLRFNTKLVKLIKEENTVTGAIV ETNNESYQITATKGVILCTGGYSANKELLKKWNPEALMKNVYNDSPRNNGSGITAALKVG ALRDQEPAECIFDRGLVPIGTKTDEMFYQTETYENWLWIGSYPFLKVNLRGQRFTNESVP YQFISNAAAKEPGYLYAMIWDSNYANQLEKFHMLGCAKFGFPGYMPSKQAFINDTNQYLK KGLIVKADTIAELAKKLYLPEEALLKTVKKQNQNYIDHIDHEFGKEFYRMSPINQKPYYG CILGGRILGTLDGLRVNEKMEVLDTNYNPINHLFTAGNDSGGFFWGSYPDRVPGLASSHA QTFGRLAGKYAAKN >gi|260196047|gb|ACQN01000020.1| GENE 18 17966 - 18862 721 298 aa, chain + ## HITS:1 COG:CAC3409 KEGG:ns NR:ns ## COG: CAC3409 COG0583 # Protein_GI_number: 15896650 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 276 23 300 319 103 25.0 3e-22 MNIYHLSIFIDLAETLNFRKTAFRKNISQPAVSQSIKSIENELTVKLFTRSKSTVKLTTQ GQKFYKKIKPLLNSYNKAVQEVRQNEENKETLTIGFTGSPYERNYLPKLLVDFQTQYKNI KVFLQNYNHTELKQQLNSKDCDVVFLTKDDVSVFSNIGYKKLITGYFVAVIPKSNKLAEK HCIDLTDFDHNRIVLLDNGWAPPEQLKLQEIIKSKNKNIDISYVNNVSVADITCQAQLGV SIMPNFIASEESNLTVTRPINYEASLEYGLGFLKGNDIGAVSRFVKFTNQRLENYRCD >gi|260196047|gb|ACQN01000020.1| GENE 19 18934 - 19926 809 330 aa, chain + ## HITS:1 COG:BH1250 KEGG:ns NR:ns ## COG: BH1250 COG1609 # Protein_GI_number: 15613813 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 329 1 331 338 171 32.0 2e-42 MTTIKEIAQRAGVGTTTVSRYLNQSPHISEQAKQKIEKAINELDYVPSASAKYLRKQETK QIGVVVSRITNPYFSSLFNKIERILNQFGYEASIMQTYDNPIAERKIIDKLKNQTFDALL MASIEDKDYIKSVLQENGNKIVLVNETINGCEKDSVSVDQYTPVVSGLEYLNKNYGSEIV YITGSNFFENKHGNQRNKAYREFLQKHQYELNQNMIFSNAHNIADGKEIAQKLLVNSSLP NAIFTNSDEVAIGVIAELKSKGIQVPEEVAVMGFDDQPLASYVQVPLTTIQQPINALANN ACRLLLNKLQVSHSLMNENLQLSLIIRQSA >gi|260196047|gb|ACQN01000020.1| GENE 20 19974 - 20295 56 107 aa, chain + ## HITS:1 COG:L124628 KEGG:ns NR:ns ## COG: L124628 COG0366 # Protein_GI_number: 15673475 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 107 1 108 515 152 66.0 1e-37 MNNLHHEIFYQIYPASFKDDNNDGTGDLKGIISELPYLKDLGITFIWLSPVYKSPMVDNG YDISDYQEINPLFGTMEDMEVLINKAHELNIKIMMDLVINHTSDQHL Prediction of potential genes in microbial genomes Time: Wed May 25 13:58:05 2011 Seq name: gi|260196046|gb|ACQN01000021.1| Lactobacillus jensenii 115-3-CHN cont1.21, whole genome shotgun sequence Length of sequence - 6485 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 + CDS 3 - 1349 743 ## COG0366 Glycosidases 2 1 Op 2 . + CDS 1351 - 3285 1729 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 3431 - 3472 3.2 3 2 Tu 1 . - CDS 3447 - 4316 458 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain - Prom 4364 - 4423 6.5 + Prom 4343 - 4402 9.4 4 3 Op 1 . + CDS 4426 - 5910 1725 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 5 3 Op 2 . + CDS 5913 - 6483 415 ## JDM1_0210 hypothetical protein Predicted protein(s) >gi|260196046|gb|ACQN01000021.1| GENE 1 3 - 1349 743 448 aa, chain + ## HITS:1 COG:VC0911 KEGG:ns NR:ns ## COG: VC0911 COG0366 # Protein_GI_number: 15640927 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Vibrio cholerae # 1 404 113 504 562 283 38.0 3e-76 HLWFQKALKDPNSKYRNFYIFKKGINGAPPNNWRSNFGAGSAWEKVPNSSDEYYLHVFSK HQPDLNWENPALREEIYKIINWWINKGIDGFRIDAITFLKKDQDFASLTADGNDGLVKVK YKTENRPGLDIFLKELKKKGWGKVVTVGETSGLRYDQFPKFIGKDGYFSMAFDFHYIDID VKSGSEWYRTNKWNTQDLFTKICDSQSKINKVPGGWAANFLENHDQPRSINKFIKSPKFR NEIGAKALATLFFFLRGAPFIYQGQELGMLNVKRTSIKEFNDVSSLNNYQRALEEGFSKK KALTFVNNRSRDNGRVPFQWDSSANHGFNRGAKPWLEYAETCSNVNVVDELKNPNSVLNF YKHLIYLRKRADLEADLVEGEFKSIDLSDNNVIAYYRGKCKVIVNLSDKNQSVPIKYDEI LSNNYDEIAEADNLIKLKPYQALVVRSM >gi|260196046|gb|ACQN01000021.1| GENE 2 1351 - 3285 1729 644 aa, chain + ## HITS:1 COG:SPy1815_2 KEGG:ns NR:ns ## COG: SPy1815_2 COG1263 # Protein_GI_number: 15675645 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 97 460 1 360 385 236 37.0 8e-62 MSKQTVNYKKLANEIIDIIGDNNIESVTHCETRLRFIVKNRNKIDDNSIQNLSGVKGVFF GSGQYQVIVGTGVVNHVYEEIEKSKRVNAIYGNDNVQSTEDRSNQPLGRRIMAMLAGIFI PIVPVIAATGLFLGLKSTFTNAEVLKIFGTTPAAIPSSLITVTSVLTDTVFAFLPALLVW STFKYFKGTPIIGIVLGIMLVSPILPNAYSVANGSAKAIILFNSIPVIGSQGSVLTALVA GFLGAKLELFFRKHMPNVLEQILTPFLTLLVTFSIMVLGVGPIVHSVENILVSLVQSLIH LPFGIGGFLIGALYPLMVVVGIHQMMIAIETSLLAATHLNPLITLEAMYGFANLGVALAI FLRAKSQNTKENCASAMASQLFGVSEPTIFGVLIRYNMRPLFVTVFTSGLGAAVLGIFNV AANTYGLAVLPSYLMYIYNFRCLIIYTIVSILTIVVAFILTNMFAIPKDVLVDDDSASKK NKIEVKDEVIAAPVSAETIELKEVSDPVFSSEMMGKGVAFKAPESGIVNIYAPAAGKLSV VAKTGHAYGIKTNQGAEILVHLGLNTVSLNGEGFQVKVKEGESIEKGQLLGRMDVGVIRS KRLDPTIIMVITNTDDYTKIESNDKNKVEHGEEILSVQKKEMIS >gi|260196046|gb|ACQN01000021.1| GENE 3 3447 - 4316 458 289 aa, chain - ## HITS:1 COG:BH3842 KEGG:ns NR:ns ## COG: BH3842 COG4753 # Protein_GI_number: 15616404 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 179 284 407 515 530 65 33.0 1e-10 MVLKYRSYDNNEIVNSSKQSFKINSLNYFHMEFLEALTTCILSSGNRTIQLTRSDIIVSH HFKNIRISSKSRHDVIRLISIDIKYPSPLNQYLVADNPLIHDMMNDTNKDLCYICFKKIH SQICHNYLDILQIIASKKRDKYYDFQSQRISGLLLTELLHNHRQKISKVDSDFPSKKVKY ASKDTQAGALMSYIASHHGQVTLSEMANEFGYQKNYLSRLCQKLFKQDFIHLRLNIRISL AKEQLKLTTKSIEEISNELGYKEVSSFSKQFSQITGISPQNWRKKSSSD >gi|260196046|gb|ACQN01000021.1| GENE 4 4426 - 5910 1725 494 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 8 461 42 452 484 125 30.0 2e-28 MVKEIFTDVVIAGTGGTGLSCAIVAAENNLKVIAIEKLPKIGGNTRISSGFFAVGTKEQQ VEGLHLSTKEAIRQLNEYNHYLNNGPLTKRIVENAKPTLEAIEKWGMEIKLNPTSNTTQY AHKDNPYAGGSYHMYQNKDDSYERIKKNLEEKGVKFLFKTTMKDLVKDKDGLIKGIIAVD ENGNEVKIYAKATLVATGGFGGNVQRVAKLMKTNRMRSLGVPSMGEGMTALENAGAVNID SHALIHAAQLARSKVTQNTSKKHLAGFSDNPLTRLLLTPLMWVDPDGRRFTNEDTVYDTV LWANAGYNVGGMYYILVDTKTLNEYTRGTKLTVSKAGPGATDKPGDFVKLADEAVRLGTA FKGETLAKLAEKADMNLKNLETSVKTYNEAVKNKDDKEFAKKSNHLIYSVEEGPFYLLKA QVAYLGTVGGVRVDDHMRVLDKSFKTIKGLYAGGANAGGYYEGQSYPAYEGLASGFAWTS GRLAGLAIVSDLGD >gi|260196046|gb|ACQN01000021.1| GENE 5 5913 - 6483 415 190 aa, chain + ## HITS:1 COG:no KEGG:JDM1_0210 NR:ns ## KEGG: JDM1_0210 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 3 188 7 196 402 230 71.0 2e-59 MKISNSTSSYITKTRIGVLAVSAMGMASLAITPSYAAIARTFSLSNTGVQMLTSLPNLFM MIAGIVVGKLTAAKLNLKILTLAAILLIVLGGFMPLIYNSSFAFLMGCSCLVGLGQGACT NLSQVLISQLLPKSTMGLTTTFTNIGGIIFIMGGGQLAASSSWITNYWIYIFSLLVLVVA ILLIPLSPKD Prediction of potential genes in microbial genomes Time: Wed May 25 13:58:12 2011 Seq name: gi|260196045|gb|ACQN01000022.1| Lactobacillus jensenii 115-3-CHN cont1.22, whole genome shotgun sequence Length of sequence - 8277 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 5, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 630 542 ## JDM1_0210 hypothetical protein + Term 639 - 674 3.3 + Prom 638 - 697 7.2 2 2 Op 1 . + CDS 944 - 1252 297 ## gi|238855598|ref|ZP_04645899.1| conserved hypothetical protein + Term 1289 - 1327 -0.8 + Prom 1273 - 1332 7.6 3 2 Op 2 . + CDS 1458 - 1895 411 ## LSL_1635 hypothetical protein + Term 1900 - 1945 7.6 + Prom 1912 - 1971 8.3 4 3 Op 1 10/0.000 + CDS 2000 - 2995 1191 ## COG2376 Dihydroxyacetone kinase 5 3 Op 2 9/0.000 + CDS 3008 - 3625 865 ## COG2376 Dihydroxyacetone kinase 6 3 Op 3 1/0.000 + CDS 3625 - 3999 464 ## COG3412 Uncharacterized protein conserved in bacteria 7 3 Op 4 . + CDS 4001 - 4702 863 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 4707 - 4739 4.0 + Prom 4712 - 4771 8.3 8 4 Tu 1 . + CDS 4830 - 5678 949 ## LCRIS_00802 hypothetical protein + Prom 6241 - 6300 6.9 9 5 Tu 1 . + CDS 6360 - 8171 2475 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 8188 - 8238 9.1 Predicted protein(s) >gi|260196045|gb|ACQN01000022.1| GENE 1 1 - 630 542 209 aa, chain + ## HITS:1 COG:no KEGG:JDM1_0210 NR:ns ## KEGG: JDM1_0210 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 8 207 203 402 402 204 64.0 1e-51 KDLNENLSDTESNQGIKLNKYVFYCAFWAFLIMMLNNVLNNNISLFIVQEKLGGTSEAAL TSTLSLVGGMLCGFIVGIIGKKFKYTSVSIAYLLYGLSYLLIAYGNSLLTVIIGSFIVGA AMSIAMGTFPYLISISVNKSSISMALGVYTAINAVGGVISPFVINPITTTLSKVGFNAFS VGGVIGLIIYVAILFSGFQKKLVINAKNN >gi|260196045|gb|ACQN01000022.1| GENE 2 944 - 1252 297 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855598|ref|ZP_04645899.1| ## NR: gi|238855598|ref|ZP_04645899.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] # 1 101 176 272 274 139 80.0 4e-32 MGDDKIESKGIFKEIQSKIKEYNDDPKRRNLVRTAELRMKEETAVARKEGREEGRVEEQK NTVKVFKALQPDATVSEGLAWIRTNTKVSPSDEEIKAILREE >gi|260196045|gb|ACQN01000022.1| GENE 3 1458 - 1895 411 145 aa, chain + ## HITS:1 COG:no KEGG:LSL_1635 NR:ns ## KEGG: LSL_1635 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 144 31 174 174 122 43.0 5e-27 MKVANIRRQTFYDNFIDKYDLLYYVVSMNLKENIDDNIDYLNWEEIIMLIFYDIELHAKF YRSVLKSQTEVDIVSMIALHVTTLLFHILEEKGLSNNQKAKDFVETYCLGMTYTMTANLY HEPEVEYDELAKKVVNAIEFTFKNY >gi|260196045|gb|ACQN01000022.1| GENE 4 2000 - 2995 1191 331 aa, chain + ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 15 331 1 315 316 401 61.0 1e-112 MKKIINDPSNVVPEMVSGLVRSYPKILKRIPGTEAVVRSDELSMTGKVGVISGGGSGHEP THAGFVGKGMLSAAICGQVFTSPTPDQIYEAIKTVDQGKGVFMVVKNYSGDVMNFDMAKD LAEMDGIKVKSIVVDDDIAVENSLYTQGKRGVAGTIFMHKILGAAAQEGASLDELDELAK KVLPHINTIAVALSAATVPEVGKPGFNLPEDEIEFGVGIHSEPGYRREKIKPSRELCEEL LSKIDASMQLDSEKKYALLINGMGATPLMEQYVFSNDVLDWLEKKNITPSFIKIGNYMTS IDMAGISVTLLELADEKWLDYLNKPVETIAW >gi|260196045|gb|ACQN01000022.1| GENE 5 3008 - 3625 865 205 aa, chain + ## HITS:1 COG:BH3396 KEGG:ns NR:ns ## COG: BH3396 COG2376 # Protein_GI_number: 15615958 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Bacillus halodurans # 3 201 2 190 196 179 52.0 2e-45 MELTLDLYEKWLRLFAKKVESNKAYLSELDAAIGDGDHGNNMARGVSAVEEGFNLKAPED LTSALKLTAPEDLTSALKLTAMAFISKVGGASGPLYGTAFLEMAKASLKTNDLYDLLEVA LAGIKKRGGASAGDKTMVDVWEKVLPDIKNGTLTEEKIQEAVDATKDMQAKKGRASYLGE RSIGHLDPGAVSSGYLFTNLLKAEE >gi|260196045|gb|ACQN01000022.1| GENE 6 3625 - 3999 464 124 aa, chain + ## HITS:1 COG:L47257 KEGG:ns NR:ns ## COG: L47257 COG3412 # Protein_GI_number: 15672232 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 122 1 122 123 119 49.0 1e-27 MKYGILIVSHVPEIAKGLPKLLEQVAPDISITYAGGTEENEIGTSINKITKAVDDNKANK ILAFYDLGSARMNLEMACEMSDKEIRIHDTALIESAYVATSLLQVNTPIDEIEKQLADLK VKGD >gi|260196045|gb|ACQN01000022.1| GENE 7 4001 - 4702 863 233 aa, chain + ## HITS:1 COG:lin1131 KEGG:ns NR:ns ## COG: lin1131 COG0580 # Protein_GI_number: 16800200 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 1 229 1 229 234 222 54.0 4e-58 MDGFLGELMGTMILIALGTGCGAAVNLKKNYAHGSNWLFITIAWGLAVTFGVYVAGSVGS QGHLNPAVTIALAAFGKFPSSQVLPYLAGQFLGAFIGAVIVAIHYYPQFKETKAKEGNSV GIFTTGPAIKNNLFNFLSEFIGTFIFIFCLLNLGNFTQGLKPLIVGLLIMVIGQTLGGTT GFALNPARDFAPRLAYAILPIPNKGLANWSYAWVPILGPICGGLLAVFLKTLI >gi|260196045|gb|ACQN01000022.1| GENE 8 4830 - 5678 949 282 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 8 280 11 293 293 171 38.0 2e-41 MPFNDTKFYGFTNDEIFGSIMQNKRFCKAIIQAALPDVNVVLVESIDAQKELGPKSDKRS KSVRLDIAVKDQSGNLYDCEMQVNNNHDIGPRMRYYQSSMDRDTLDRGEPYTSLSRTYLI FLCAFDPFGKGKLRYSFHLYDDEDKSIQLKNNAENIIINSKGSGNENIDLLNLKKLMNDD KIESKGIFKEIQTKIQEYNDDPKRRNLMRTAELRMKEETAVAEKRGREAGDKNTVRSLTL TIKEMRPEINELDLFKQIKKTVGSDFSLNDAEIKTIIHQNLK >gi|260196045|gb|ACQN01000022.1| GENE 9 6360 - 8171 2475 603 aa, chain + ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 603 1 602 602 669 57.0 0 MCGIVGVVGKAARNIILNGLTNLEYRGYDSAGIYLNDLKGHEYLTKAVGRISNLKEKMTP DEDGLVGIGHTRWATHGKPTVDNAHPHFDETKRFYLVHNGVIENYTELKDKYLQGVKFHS DTDTEVIVQLISKIARDKNLDGFTAFKEALKLVRGSYAFLLVDDQEPDHVFIAKNKSPMM LGLGDGFNIIASDAISVLDQTKTFVSLEDGDVGDITKDSYTIETIDGEKVERKPKVLDID PNAASKGTYEHYMLKEIDEQPGVMRHISQTYLDDAGNPKVDSKIVDAVAKADRLYIFAAG TSYHAGLVGKALFEHYTGIPTEVGYASEAGYHFPMMSKNPFFIFLTQSGETADSRVVLKE TNKRGIPSLTMTNVEGSTLSREATYTMLLGAGPEIAVASTKAYTAQVAVQAVLAKALGEK LGVKEAQEWNLHHDLAIAAEGIQQLVDGKEKLKEIADKYLIKSRNAFYIGRGIDHAVALE AALKLKEVSYIQTEGFAAAELKHGTISLIENGTPVIALINDPVTAELTRGNIQEVVSRGA NIVTIVSKEFANSSDDIVLPEINYYMSALLTVIPTQLLAYYASRDKGLDVDKPRNLAKSV TVE Prediction of potential genes in microbial genomes Time: Wed May 25 13:58:30 2011 Seq name: gi|260196044|gb|ACQN01000023.1| Lactobacillus jensenii 115-3-CHN cont1.23, whole genome shotgun sequence Length of sequence - 11025 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 3, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 40 - 99 6.6 1 1 Op 1 . + CDS 135 - 1079 223 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 2 1 Op 2 . + CDS 1089 - 1610 573 ## COG1267 Phosphatidylglycerophosphatase A and related proteins 3 1 Op 3 . + CDS 1613 - 2374 692 ## COG0586 Uncharacterized membrane-associated protein - Term 2241 - 2270 1.4 4 2 Op 1 . - CDS 2280 - 3515 1872 ## COG0112 Glycine/serine hydroxymethyltransferase 5 2 Op 2 7/0.000 - CDS 3567 - 4946 1229 ## COG3428 Predicted membrane protein 6 2 Op 3 . - CDS 4939 - 5424 458 ## COG3402 Uncharacterized conserved protein - Term 5435 - 5478 6.0 7 3 Op 1 . - CDS 5500 - 8019 2161 ## COG0178 Excinuclease ATPase subunit 8 3 Op 2 1/0.000 - CDS 8035 - 8766 551 ## COG0778 Nitroreductase 9 3 Op 3 1/0.000 - CDS 8841 - 9257 463 ## COG1396 Predicted transcriptional regulators - Prom 9343 - 9402 4.9 - Term 9366 - 9401 1.0 10 3 Op 4 . - CDS 9424 - 10884 1282 ## COG0531 Amino acid transporters - Prom 10946 - 11005 9.3 Predicted protein(s) >gi|260196044|gb|ACQN01000023.1| GENE 1 135 - 1079 223 314 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 272 2 276 306 90 28 5e-18 YDLAIIGAGPVGLFSAYFAHLHGLKVVLLESLPELGGQPAALYPNKVIQDIPVFKDIKSF QLTEKLCSNLSSDVTIICNYKVENIIHEDSQFIINDDLISKTVLITTGNGAFKPKAFPLP IPTSIDNKLSYFVKNPQDYQNKEVAVLGGGDSALDWALELSQYAKVSLIHRRNQFRGLES NVEKVKHNSQISVLTPYLPANLIDNSGRCELSLKKVGTDETKTIVFDNLIVAYGFRANNR FVKKWGIELENDLIKVDRKMETSVKGIFAAGDSVGYDGRVPIIGIGFGEAQVAITSIMQT IFPNKKMTIHSTSI >gi|260196044|gb|ACQN01000023.1| GENE 2 1089 - 1610 573 173 aa, chain + ## HITS:1 COG:BS_yutG KEGG:ns NR:ns ## COG: BS_yutG COG1267 # Protein_GI_number: 16080281 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Bacillus subtilis # 1 158 1 160 166 188 63.0 4e-48 MTENQEHFYQHTIALLNERGVTLKDIEDLVYYLQKDYIHPLTHEAMQESIEKVLQKREVQ NSIITGIELDKLAEKKQLSEPLQSIMENDEPLYGCDEVLTFSITNLYGSIGFTNYGYIDK TKPGILKWLNDKSTGKINVFLDDLVGAVAAAAASRLAHTQTDLEDDSIYSRKD >gi|260196044|gb|ACQN01000023.1| GENE 3 1613 - 2374 692 253 aa, chain + ## HITS:1 COG:lin0035 KEGG:ns NR:ns ## COG: lin0035 COG0586 # Protein_GI_number: 16799114 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Listeria innocua # 3 212 7 216 219 200 53.0 3e-51 MGLISFILHIDDHLVNIVNQFGNYTYLILFAIIFIETGLVIFPFLPGDSLIFAASAMAAN TKYGLDIWLVYLAVVIAAILGDSANYEVGAWSTRAGSKHAWFNKLINEKNRYAAEKFFER HGSITIVIGRFIPFIRTFVPFISGGSKMHYGHFITYNILGGILWTGLFSIIGYFFGNLPI VKTHFSLIVIAIILVSVVPIAIVALKKKMTLKKRIPLGILFLSSQSDAFQQVFEHLQLPL KELLDYHYYLKRR >gi|260196044|gb|ACQN01000023.1| GENE 4 2280 - 3515 1872 411 aa, chain - ## HITS:1 COG:L0082 KEGG:ns NR:ns ## COG: L0082 COG0112 # Protein_GI_number: 15672583 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Lactococcus lactis # 7 410 12 415 415 521 66.0 1e-148 MKYAEKDPQLWDAIAQEEKRQQHTIELIASENIVSKAVEEAQGSVLTNKYAEGYPGKRYY GGCKYIDIAEQLAIDHAKKLFGAAYANVQPHSGSQANAAVYQALLKPGDIILGMGMDAGG HLTHGAKVNFSGKMYKTYAYGLNPTTERLDYDAIRKQALEIKPQIIVAGASAYSQIIDWD KFREIADEVGAYLMVDMAHIAGLVATGYHPNPVPVADVVTTTTHKTLRGPRGGMILSRSE ELGKKFNSAVFPGSQGGPLEHVIAAKAQAFYEDLQPQYKTYIGQVVKNAKAMAEVLNDSD TIRVVTGGTANHLLVLDITKTGLTGKDAQNLLDSVMITTNKEAIPNDHRSPFITSGLRIG TPAITSRGFDEEDSRAVAKLIIDALNNSDNQAVLSKVAEGVQKLVEKHPID >gi|260196044|gb|ACQN01000023.1| GENE 5 3567 - 4946 1229 459 aa, chain - ## HITS:1 COG:lin0882 KEGG:ns NR:ns ## COG: lin0882 COG3428 # Protein_GI_number: 16799955 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 59 456 66 487 494 127 26.0 5e-29 MTKHLSPLAMLFFLKDQVRNKIGILPAIIIGCNYLNFLKGNYLIQIGSFVALILLLTFLE YFFFTYEISEKELIIRSGVFEKKEKHIPYSRIQTIHTKYPFWMEPLKQTKVILETANQDD EGTIVLRVVSQAELERLQDAMKIADVATILEEPSGYYINNRDLAIYTITSPGVIAGALMV YSLYEKVADFDIKIDNSLPMIILFLLIGIGLTFFNTWQRLFNFSIHNEQNQLKSKSGLFS KTQMTLPVKRIQGIIFEATYLRYITKLVSIQAIASSKLTDEEEGNVNLIPVVKRKEASEV LHELLPTWPSKVKNLHRLSSAGKRSLFIYRFNWLLITSVIINVISYFFLSGAFVWILGLN LLVGVYSLVASVILICSSGINYDDQYLYFGTKRYFKIINAIFPREKIQYLKLTQSVWMKK KKLMHIELEVMDKHFGYQVRVRYLPEEVAKNVQEWFMEK >gi|260196044|gb|ACQN01000023.1| GENE 6 4939 - 5424 458 161 aa, chain - ## HITS:1 COG:lin0881 KEGG:ns NR:ns ## COG: lin0881 COG3402 # Protein_GI_number: 16799954 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 156 6 156 160 72 28.0 4e-13 MQNKLPNEIKKVWLAENILEVIGTMIGFGIVYFVLITFVAKNLVNLFLMIWAILFALVIV FDIVQILLIPYVYNFWTYQITGEYVVLHKGYIFRKQITVPLARLQTVTLEAGPLLRWQHL TELHLHTASSSEKISGLKLEDAKLFRKQLLNIIQKAGDKHD >gi|260196044|gb|ACQN01000023.1| GENE 7 5500 - 8019 2161 839 aa, chain - ## HITS:1 COG:DRA0188 KEGG:ns NR:ns ## COG: DRA0188 COG0178 # Protein_GI_number: 15807854 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Deinococcus radiodurans # 12 830 96 918 922 498 36.0 1e-140 MNENTTVGPQAIEVRGANINNLQNIDIDIPLHKFVAITGPSGAGKSSLAMGILYAEGSRR YLEALSTYTRRRITQAKQVGVKEIKHIPSAIALRQRPSIPSERSTVGSMTEIYNVIRLIF SRLGSPVCPNGHRIAPSLSISQAMDNSGEKMGKINCPTCGVEFSAKSAEDFAYNSAGACP KCHGTGQVQTLDPEKIIPDDNKSINEGAVASWRLPGRNFMNTVAATLGVRLDVPFKDLTP KEKNIVLYGKKKKYAVDFHTSTGRVYSTDGTLYENAYEAVYASLKTAKTERSLVRINKFF KFSTCPLCHGNRLNPELLKQIVAGKNIAQVANLTLGELSKFEKKTLNWLPDNVQAMAKVI FKDLDDNLAPLLDLGLDYLTLARSGNTLSTGELQRIQLARTLRTETTGVLYVLDEPTIGL HPDNVAGLIKILRRLISQGNSLVVVDHEVSVIEAADWVIEIGPQAGEKGGKVVAQGKPGE LINNPKSMIGKYLAGNAKITNLKKQSVNLAHATQLSVSNYFNLHDITIAVPDEKLTAITG FSGAGKTSLILDSLVPAIKNPQHLPAQVTNITTSIKTVVSVDAKPVGKNTRSCVATYTSI MDSLRRLFASLPASKAENLKMSAFSYNNKQGACPTCQGLGSISLDLQYLPDMEQVCPTCH GRRFASKILKIKWHNYSIADILELSVNDAISIFAQEKKILRELDLLKQVGLGYLHLGEST PELSGGEAQRLKLTKHLLKSCKQTLFVFDEPSIGLHPSDVQILLKVLRHLQAKGATIIII THDLDIMTNCDYLIDLGPKGGINGGQVMATGNPFALVNSQKNSLTLQYLRQHFVNYHLI >gi|260196044|gb|ACQN01000023.1| GENE 8 8035 - 8766 551 243 aa, chain - ## HITS:1 COG:CAC0748 KEGG:ns NR:ns ## COG: CAC0748 COG0778 # Protein_GI_number: 15894035 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Clostridium acetobutylicum # 6 211 2 224 241 82 26.0 8e-16 MTSKSNLIEAINLRHTVRRYKPTEIDFDNRKFILERVNKLNSSYNLMMRAVFDDDSALSL LGKFVLSKNARNFIVLAGKDNQQEQLGYCAADLMLYIQTLGLNSWFVGGTYNRQKLENKY HEPVWGIVVLGYGLDSGKKHACKSLNQVSVSDNDVEWYKKGVVAALKAPTALNKQNFKFI LANGVVELEVKESSYAKLELGILRYFFELASGKKIEKKKLSKMIVYIVKKERLLKLYNIN SFL >gi|260196044|gb|ACQN01000023.1| GENE 9 8841 - 9257 463 138 aa, chain - ## HITS:1 COG:L12334 KEGG:ns NR:ns ## COG: L12334 COG1396 # Protein_GI_number: 15671989 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 3 82 2 82 107 62 41.0 2e-10 MDQINERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSQLYDVSID YIVGNKNFDKKEETQETSKQNLLKKQRAKRALKGILWGTASMLAAFGMEVLKQDSWVIAI FAAVPLHFLINYYIDNKG >gi|260196044|gb|ACQN01000023.1| GENE 10 9424 - 10884 1282 486 aa, chain - ## HITS:1 COG:PA1194 KEGG:ns NR:ns ## COG: PA1194 COG0531 # Protein_GI_number: 15596391 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Pseudomonas aeruginosa # 1 453 1 438 472 275 38.0 2e-73 MKQEVKNKVGLGGLTGLIVGGTIGSGIFALPATLTAGANPEGILIGWTIVAIGMFSLAGV YRNLTLQQPKIDDGIHGWSKNLFGDMGGFIANYGHGIGDAIGNASYLTVIFSALGGFSFL QIFGNGTTWPSIIGASILLWIVTGLVLKGIKTSTVMNNITTIAKVIPIAMFIILAILNFS PHTFLAHFASTNVFDVATNHWMHVSIFDQSKSVLLSAMWTLIGIESGTIFATRAKKLSDV AKATNLGAMFVIVLLVGTSVLSLGLLAPNQISKLHDPSVAGLMENMVGPWGGWLIYICLI VSVVGALIAWVNLCSEQLRVAGRGGSGSKWLAELNEAEAPKNALLVTTGLTQVLMIIAGL YSAGYAVLLKFSTSMAIVPYFFASLYALKSVICGIGFKDLPTYKRITSAIYAVLATAFTL FMIFGAGLRYLLLGAIIWMTGFGFFYQGKKEKGQRLSKVEWLWWGVIAVMALAGILGLLT GTLQIK Prediction of potential genes in microbial genomes Time: Wed May 25 13:58:33 2011 Seq name: gi|260196043|gb|ACQN01000024.1| Lactobacillus jensenii 115-3-CHN cont1.24, whole genome shotgun sequence Length of sequence - 4673 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 81 - 135 4.4 1 1 Tu 1 . - CDS 139 - 549 235 ## COG1396 Predicted transcriptional regulators - Prom 678 - 737 8.3 + Prom 508 - 567 3.8 2 2 Op 1 . + CDS 696 - 1067 236 ## LCK_00431 HMG-I and HMG-Y, DNA-binding: regulatory protein, TetR 3 2 Op 2 . + CDS 1070 - 1414 256 ## LCK_00432 hypothetical protein + Term 1415 - 1458 4.4 - Term 1400 - 1449 8.4 4 3 Op 1 . - CDS 1451 - 2389 972 ## COG0276 Protoheme ferro-lyase (ferrochelatase) 5 3 Op 2 . - CDS 2402 - 3751 1320 ## COG0534 Na+-driven multidrug efflux pump - Prom 3795 - 3854 5.0 6 4 Tu 1 . - CDS 3860 - 4009 119 ## GALLO_1419 hypothetical protein - Prom 4188 - 4247 7.2 Predicted protein(s) >gi|260196043|gb|ACQN01000024.1| GENE 1 139 - 549 235 136 aa, chain - ## HITS:1 COG:L12334 KEGG:ns NR:ns ## COG: L12334 COG1396 # Protein_GI_number: 15671989 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 4 81 3 80 107 60 42.0 1e-09 MNNLNERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLD YLVGNSKSESIKINEQILRKKRNALQVILWSACVAIVLLLIMFFEDERAGILFIFAIPLS AWINYYYQCQKSKQKN >gi|260196043|gb|ACQN01000024.1| GENE 2 696 - 1067 236 123 aa, chain + ## HITS:1 COG:no KEGG:LCK_00431 NR:ns ## KEGG: LCK_00431 # Name: not_defined # Def: HMG-I and HMG-Y, DNA-binding: regulatory protein, TetR # Organism: L.citreum # Pathway: not_defined # 1 120 1 120 131 105 45.0 6e-22 MGRKKKYNSNEVIEAITSVFLQYGYEATSLDTLVKATGLLRGSLYSEFGSKRGMFLTVLR NNMKQAKDGEKTTHLMLVAMLELSRRDKEIHALIQDWCQSFSNKELELLLGKKLLSIAKI ERY >gi|260196043|gb|ACQN01000024.1| GENE 3 1070 - 1414 256 114 aa, chain + ## HITS:1 COG:no KEGG:LCK_00432 NR:ns ## KEGG: LCK_00432 # Name: not_defined # Def: hypothetical protein # Organism: L.citreum # Pathway: not_defined # 1 113 1 113 117 115 46.0 3e-25 MRNKLSIENNNLIVEPQGLDKLWSLKNKLVIPLKHIAGATLDNTILFDKKGLRSPGTAAL GYYAGSFHLNNEINFYNARKGSDIIVIQLKEEHYNRLILEIDNPRQWIDKLNNI >gi|260196043|gb|ACQN01000024.1| GENE 4 1451 - 2389 972 312 aa, chain - ## HITS:1 COG:L0194 KEGG:ns NR:ns ## COG: L0194 COG0276 # Protein_GI_number: 15673549 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Lactococcus lactis # 2 311 4 309 314 272 45.0 8e-73 MKKGILLVNLGTPKSANPKDVREFLKRFLGDERVIKMPRLLWKAILHGIILNTRPKKSAA MYEKIQTEAGFPLLRYTEMQRDNVAKLFPDYLVEYGMSYSAPSIETSLDKLLDQGVDDLT IVPMYPQYSGTTVGSVFDSVMNYFLKTDKVVNLHFIRSYYDNEIYANYFAQKIKQALAKN AIDAIVISYHGIPLSYKQQGDNYDEECTKTTEAIMAKVDTNIPVYQTYQSKFGPGEWLTP ATSDTLKKLPSEGYKKVLILAPGFVVDCLETIEELESENKGYFLNAGGEEFHYLAPFNGD EDFAKLVKSLIV >gi|260196043|gb|ACQN01000024.1| GENE 5 2402 - 3751 1320 449 aa, chain - ## HITS:1 COG:MA2050 KEGG:ns NR:ns ## COG: MA2050 COG0534 # Protein_GI_number: 20090897 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 4 427 7 434 468 209 31.0 9e-54 MNTLFAKAPIKQVYFKLAFPVVLGMITTMVYNLVDTMFVAKTGDANLVAAVTISTPLINF LIAFSDILGLGGSSVISRLFGEKKYEEARRVSSFSIYAGIITSFILTAILFVFEKQILWL FGARASTYADAAEFYRVLAIGAVFIMCSLIPQNLLRTEGLAVEAMIGSISGTVVAIILDP VFLFVLKMGATGVATANIIGFIVTDSVLFYYMIKRAKFINAKVKFMKVKSHLFNEVIAIG IPSSVNQFANTFGMALLNSTLAAYGAKEVAAMGITQKIYSIVILAIVGFTFGSQPLIGFN YGAKNWQRLKEVLRFDIFVQVVYAIVSALILIVFAHQIVGLFMNDSLIINSGSYMLLATL ITTPLAGIIMVYTTVFQSIGNAWGALIMSLARQGIVYLLAMIVLQRFLGLHGIVWAQAAS DVITFTIGYVIFSKSLNLKAKIMKEQNNN >gi|260196043|gb|ACQN01000024.1| GENE 6 3860 - 4009 119 49 aa, chain - ## HITS:1 COG:no KEGG:GALLO_1419 NR:ns ## KEGG: GALLO_1419 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus # Pathway: not_defined # 1 49 45 93 95 67 67.0 1e-10 MENPNPAYVWKVRDYLEDMLKREGKEVYPWSKMAHYSANRWFSYDTPGR Prediction of potential genes in microbial genomes Time: Wed May 25 13:58:42 2011 Seq name: gi|260196042|gb|ACQN01000025.1| Lactobacillus jensenii 115-3-CHN cont1.25, whole genome shotgun sequence Length of sequence - 13273 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 7887 9697 ## LJ0621 hypothetical protein - Prom 7929 - 7988 9.9 + Prom 8076 - 8135 10.8 2 2 Op 1 . + CDS 8211 - 9080 1076 ## LAR_1469 hypothetical protein 3 2 Op 2 . + CDS 9073 - 9231 72 ## gi|256852128|ref|ZP_05557515.1| predicted protein 4 2 Op 3 . + CDS 9224 - 10534 1169 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 5 2 Op 4 . + CDS 10546 - 11679 956 ## LAR_1467 endoglucanase + Term 11798 - 11838 -0.2 + Prom 11715 - 11774 7.2 6 3 Tu 1 . + CDS 11940 - 13265 1115 ## COG0531 Amino acid transporters Predicted protein(s) >gi|260196042|gb|ACQN01000025.1| GENE 1 3 - 7887 9697 2628 aa, chain - ## HITS:1 COG:no KEGG:LJ0621 NR:ns ## KEGG: LJ0621 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1010 1572 2183 2715 2789 211 35.0 2e-52 MLSKNNKKMRAMKMATDRQQHFSLRKLSVGLVSVLMGTTVFLTSQSITAKADTLPVTTSS TSSSADNTSQEASSESSATNESKVASSSSQSTESEASTSQSSNNSQNTSKDEVATNQATS AESSNTDSQVANNNTTELKVSGTERAANTDALAESKATNDASVQEVSNWNDFDRALRNST ISTININADFSSNNYQNNVSRYNIASRTLTINGNGHTVDMGSIGYYMNPAGNKTADWTIN NGTFFSKSATGPFAFLTGYDRNSKIAEASGAVHRITLNDVTIYAGQAAYAVNAEIVLSGT DNLNSGASYYSTLANKTIYTETGGNRSGVEAQWITISPNANVTVNTDHGAVLTTERSDSN NRKIEVGENATLNANYLHTTYGLPDNGTKVAVLSNGADYGTVIFHAGSNATFSMPNNRVT NLNGNGNSSWGDGSVLYLGAANTTIEKGATVTLNNPKEAQTDNSIFLRNDGTQLNVFGKL IINDGARDYTLRMDNKVTLNVGQKLSDSDFSTDNGQMIINRDGDFYLNNDGGALSLWGPI TVNVNSGARLEVNSTGINNVRGSGNSQALLRVGGSSKLNVYKRGTFILRDSSNGTLSLVN QYGANGNFNFDNTADVIFDISQNGSKNSRIFSLPGQLVATNDSVRAMLNPTSSITNMGTF KRVQLPLNGSGTITGTTLHSEYQQAGYNNIVSINNAIRNGKLRYLEFSTREVNKPSITGE GQGFTDNGAQLKGSVVDESTDTGAVAVVYDSNNNELGRGNVDDNGNFTINLAKPLLNKEG VRVRIETPRGAGAFATTVAPLGPTVKSPITVGRDQNLVGQDASQYITNKDAISNLKPGST TFTDSDYEPTFSKATWKSVDFDKKQGVITVTYKDNTTTDLTVDLNVKDVITDADKYTPEA GTIKVDNSHKLDGDDAYDAITNHDSLPADKTTGYNWVVDDTHPAVDTTKPGDHKGYVQVT YEDGSKSDPVEVTVHVIGDNEKYNAVSKTLNVKKNDTVNPEDLIANRDGDASQDGKTYTK LPDGTKYDWQGTPISTKDGGVKRGQVKVTYPDGTTQVVDVTVNVYEDANVSTVVGKDINA KLNEDLTNRAIDAIDKDKSTNLPTDSSAYTWASKVDTSTSGDKPATVVVTYPDGSQNSVN VTVHVISDADKYKIITQDITVPINTDLTNRAKDGIGNADKAWGTTPQLPDGTTYAWEGGV PNTSVTNKKIGHVKVTFPDGSSQVVEVNINVTDNQKSDAEKHTLQPNIQYAYVGQDMSDS SYARKGILNADEQTGATFRWRNGFVPDASKAGWTTGIVVVTYPDGSINEQKVWVNVQSDA DRYPIETTTITVAKGTNISDKSWARKGVYNADQAGKENPQLPAGTDVIWYNGAPDTSAPK QKVGYVEVTFPDNSHKVVPVTVIVTDNGESDAEKNPIEGQDFSVYVNETPDPQKGIKDFD TIKNVKSVTWKGNNTPDTSKVGVVPATVVVTYNDDSSNEVAINITVKQMADDYNPQGGTI KASLHEDLSGTNRAEDAITNTSDMPDGTTYAWKEKVDTETAGSKPATLIVTFKDGSSKEV PVTVQVSSLANDYKDKIDVRTDTRTIVAKWKDDIKNYPAVDGIANAKTETTTDGKNYPNL TPVLKDQNPDTAIVWKSAPDLSKTGLTTGIATITFKDGSTRDVTIPVMVKSEADLNTPDV QTIKINSGESPKAEDGVANLHKDATNPQLPAGTDVNFDKQTDVDDFVKHGLPGQTKEFSA TVTYPDGSNETISIPIHINADNEVYTPVTQGIKAAKGTLPEAKAGIANLKDSVKQDDKTI SALPDGTNVVWANPGQVMSELGKMTTGQTKEFDAVVIYPDKTTANVKIPVTIANDADTYP IVKQPIVLPDRTLPENADDGLANLHKAIDFKTPQLPDGTHAEWKDKTAAQEIVKNMTPGD TVSIPADVVFPDGSIKSEGMDVIVHLHGQADDVDIKTQPVDLNKDGSLPDAKKGIQDVDN IPHLKRVDWSKDKDGTPASDLVKGMKPGETREVPATVTFDDGSTKDVTIPVHMHGQADDY DVQTQKVNTDHNGQLPEKAKDGIKNYDELPKDTTVEWGKDAQKTVDQTKPGTDVDVPATV TFPDGSKKEVTIPVHKYGISDDATITPKKVPTDDGSLPDASEGIDHVSFTDGPDKTPAQI IADGGRIEWGDDAADMVKNLKPGQSVDGVPIRVIFRDGSEKNVTITVKRPGQADEYGDKI ETQTVKTDDKGKLPATADDGIKNLGDLPEGTHASWGEGAQNLVDQMKSGDTKNIPATVHF PDGSTKDVEIPVHKTSQAEEYGDKVETQTVNTEKGKLPATADEGIKNLGDLPEGTHASWG EGAQDLVDKMKPGETQNIPATVHFPDGSTKDVEIPVHKTSQAEEYGDKIETQTVNTEKGK LPATADEGIKNLGDLPEGTHARWGEGAQDLVDQMKPGDTKNIPATVHFPDGSTKDVEIPV HKTSQAEEYGDKIETQTVNTEKGKLPATADEGIKNLGDLPEGTHASWGEGAQNLVDQMKS GDTKNIPATVHFPDGSTKDVEIPVHKTSQAEEYGDKIETQTVNTEKGKLPATADDGIKNL GDLPEGTHASWGEGAQDLVDQMKPGDTKNIPATVEFPDGSTKDVTIPV >gi|260196042|gb|ACQN01000025.1| GENE 2 8211 - 9080 1076 289 aa, chain + ## HITS:1 COG:no KEGG:LAR_1469 NR:ns ## KEGG: LAR_1469 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 286 1 286 287 303 51.0 5e-81 MIRKHLVSAGITALAAVICICTALMWLAGLASPLVLSSTAILIILGVITGSLIPTILITW LIIGLTTIGAAILLIGYVVIDNSQKILLLLTYPLVASLTALAKTIIGHWGWIDRDRNAIE SYLSHYDPVVKLQTTYNAAKLYHKEAKFIANEKEANLRIHLATVHWVHSNQFKQFHDIEY KTVLRRISKVLKQLRFPSEQLYYIGNSTFLIISYALAEDTYIYKNRQTKQALEALEVENH NPQFKWGTLKVDQTNVSSYTELEHALRHLTRDMETDLVVEYLKGAEING >gi|260196042|gb|ACQN01000025.1| GENE 3 9073 - 9231 72 52 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256852128|ref|ZP_05557515.1| ## NR: gi|256852128|ref|ZP_05557515.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 52 1 52 52 62 100.0 8e-09 MVNFFFILADVITILFAILIIILLVCQWVIYFRVEKTILSKESSYEKEEQNA >gi|260196042|gb|ACQN01000025.1| GENE 4 9224 - 10534 1169 436 aa, chain + ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 1 434 2 416 416 223 31.0 5e-58 MLSEVLMIITLISIWLSILMSMITLGGATHFWLKQSKVLVDVKPLKKYPKISIIVPAHNE ELVIAQTTQALLDLNYPKDKLELLLYADNCVDKTADVMRSVTASAQKNGYHIQIIERKGT GGKAGVLNDALKIAKGDYLAVYDADAMPEKNALYFLVRKALENPQKYVAVFGRNKTRNAE QNFLTRCINQEIVVTQRIQHCGIWHLFQIGRIPGTNFIIQRNFVKEIGGWRNGALTEDTD ISFKIMQSGKLIALAYNSEAFQQEPERLHDYYFQRLRWAKGNYQVVINNFVHLFDCSNWR VKLETLYYSCTFFWFNAAIILSDWIFFSNVIALIIRLFNPEFQIPFTFGESNILITQLLL LNWLFMIILYLLQINTAMSTQYGQATTHQIWLGLASYFTYSQLFIIVSVHAVCSVILDDL FHRNKTVWVKTRRFND >gi|260196042|gb|ACQN01000025.1| GENE 5 10546 - 11679 956 377 aa, chain + ## HITS:1 COG:no KEGG:LAR_1467 NR:ns ## KEGG: LAR_1467 # Name: not_defined # Def: endoglucanase # Organism: L.reuteri_K # Pathway: not_defined # 1 375 1 377 379 435 57.0 1e-120 MKQKIMWVILPIIIANYIATFYFIRTKNPEQIQIKTYQDWKKNYLVTKNSNQVFVNAGTN KHPVALSEAQGFGLIITAKAGKRGWASETEFDKLLNYYLAHQDYVGDHHTQKVSLMQWKQ YYNHHGKWVSEYNSATDGDLYIATALNTAAKVWPQKANYYHSLEAKLANDILRYEYNPQT GALTTGDWVRLDSYYANLMRTSDVLPFVFTNLAKTTGNKQWYAVQDSMLEKLVKLSKQHK AGLVPDFAWVGRNYAKPVAPKTIAGKNDGYYAYNACRVPIMLAKSESPKAKFVEKRILHY FSKQYNVFGGYKLNGERLVKNQSPSFSAPIFYAVNQYRGQGYDNLFVSQKYIFSKALPKN DYYGATLTTLVAVEGWE >gi|260196042|gb|ACQN01000025.1| GENE 6 11940 - 13265 1115 441 aa, chain + ## HITS:1 COG:BS_ykbA KEGG:ns NR:ns ## COG: BS_ykbA COG0531 # Protein_GI_number: 16078351 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 9 435 8 434 438 371 49.0 1e-102 MKQQPKEHLKRSLGFGSAISIVIGTIIGSGIFFKQGSVLDSAGNSTLAILAWILGGIITL AGGLTIAEIGAQMPYTGGLYIYIENIYGRIAGFLAGWMQIIVYGPAIIASVAGFMSILLT NFFGLGTEWRIPFAVSCIVLIGLMNLLENKISALFSVVTTLGKLIPIAAIIIFGLFWGNQ NALGQTMTEINQSTGNFGVAVLATLFGYDGWILIANLGGEMKNPQKLLPKAIILGITCVL IIYTLITIGILRFLPAELIHQLGENAPAYMTTKAFGPIGGKLMSAGIIISMLGTLNGKML TFPRIVFAMAERKDIPFSKSLAFLSKKGKAPINATIFVSILAFAMMLFFNPDRLSDLCVF TVYCFYLLAFFGIFILRKQNKNRPFSTPLYPLVPIVAIAGGVFVLSCELINDFHGVILFL GFVVLGLPIFYLVKRYYGEKI Prediction of potential genes in microbial genomes Time: Wed May 25 14:03:28 2011 Seq name: gi|260196041|gb|ACQN01000026.1| Lactobacillus jensenii 115-3-CHN cont1.26, whole genome shotgun sequence Length of sequence - 93699 bp Number of predicted genes - 117, with homology - 116 Number of transcription units - 31, operones - 19 average op.length - 5.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 241 - 747 490 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 2 1 Op 2 . - CDS 761 - 1789 965 ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF - Prom 1819 - 1878 9.1 - Term 1849 - 1885 -0.5 3 2 Op 1 1/0.000 - CDS 1893 - 2321 468 ## COG1959 Predicted transcriptional regulator 4 2 Op 2 . - CDS 2347 - 3198 1234 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 3239 - 3298 10.4 - Term 3326 - 3366 -0.7 5 3 Op 1 9/0.000 - CDS 3373 - 4419 736 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 6 3 Op 2 20/0.000 - CDS 4416 - 4970 545 ## PROTEIN SUPPORTED gi|227894610|ref|ZP_04012415.1| ribosomal protein ala-acetyltransferase 7 3 Op 3 . - CDS 4954 - 5682 879 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 8 3 Op 4 . - CDS 5682 - 6221 672 ## LBA0387 hypothetical protein 9 3 Op 5 . - CDS 6221 - 6799 459 ## LBA0387 hypothetical protein 10 3 Op 6 . - CDS 6792 - 7520 620 ## COG3884 Acyl-ACP thioesterase 11 3 Op 7 2/0.000 - CDS 7523 - 8377 937 ## COG0313 Predicted methyltransferases 12 3 Op 8 1/0.000 - CDS 8361 - 8717 345 ## COG4467 Uncharacterized protein conserved in bacteria 13 3 Op 9 2/0.000 - CDS 8735 - 9583 716 ## COG0470 ATPase involved in DNA replication 14 3 Op 10 4/0.000 - CDS 9583 - 9903 469 ## COG3870 Uncharacterized protein conserved in bacteria 15 3 Op 11 . - CDS 9903 - 10550 834 ## COG0125 Thymidylate kinase - Prom 10570 - 10629 9.9 - Term 10607 - 10637 2.7 16 4 Op 1 . - CDS 10641 - 10880 274 ## LCRIS_00381 hypothetical protein 17 4 Op 2 23/0.000 - CDS 10877 - 11476 402 ## COG0353 Recombinational DNA repair protein (RecF pathway) 18 4 Op 3 30/0.000 - CDS 11476 - 11805 504 ## COG0718 Uncharacterized protein conserved in bacteria 19 4 Op 4 2/0.000 - CDS 11846 - 13627 1786 ## COG2812 DNA polymerase III, gamma/tau subunits - Term 13639 - 13673 4.1 20 4 Op 5 . - CDS 13786 - 14310 431 ## COG0590 Cytosine/adenosine deaminases 21 4 Op 6 3/0.000 - CDS 14320 - 14919 705 ## COG2813 16S RNA G1207 methylase RsmC - Prom 14944 - 15003 8.0 - Term 14947 - 15003 11.5 22 5 Op 1 47/0.000 - CDS 15015 - 15377 572 ## PROTEIN SUPPORTED gi|227525592|ref|ZP_03955641.1| ribosomal protein L7/L12 - Term 15395 - 15442 -0.6 23 5 Op 2 2/0.000 - CDS 15443 - 15961 839 ## PROTEIN SUPPORTED gi|227525593|ref|ZP_03955642.1| 50S ribosomal protein L10 - Prom 15981 - 16040 1.5 - Term 15982 - 16016 4.0 24 5 Op 3 . - CDS 16143 - 17063 263 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase - Prom 17084 - 17143 5.6 - Term 17081 - 17111 0.3 25 6 Tu 1 . - CDS 17165 - 18181 907 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 18224 - 18283 8.0 - Term 18301 - 18338 6.4 26 7 Op 1 55/0.000 - CDS 18358 - 19050 1162 ## PROTEIN SUPPORTED gi|227525596|ref|ZP_03955645.1| 50S ribosomal protein L1 - Prom 19079 - 19138 2.1 27 7 Op 2 45/0.000 - CDS 19147 - 19572 693 ## PROTEIN SUPPORTED gi|227525597|ref|ZP_03955646.1| 50S ribosomal protein L11 - Prom 19642 - 19701 4.2 - Term 19598 - 19630 2.5 28 7 Op 3 . - CDS 19703 - 20260 753 ## COG0250 Transcription antiterminator - Prom 20296 - 20355 3.8 - Term 20278 - 20320 2.2 29 8 Op 1 . - CDS 20362 - 20532 230 ## Ldb1668 preprotein translocase subunit SecE 30 8 Op 2 . - CDS 20535 - 20684 257 ## PROTEIN SUPPORTED gi|227525600|ref|ZP_03955649.1| ribosomal protein L33 - Prom 20730 - 20789 10.2 - Term 20734 - 20782 4.1 31 9 Tu 1 . - CDS 20832 - 21050 301 ## LGAS_0346 hypothetical protein - Prom 21097 - 21156 6.0 32 10 Tu 1 . - CDS 21509 - 21658 86 ## gi|297205033|ref|ZP_06922429.1| sigma H family DNA-directed RNA polymerase sigma factor - Prom 21682 - 21741 8.3 33 11 Op 1 7/0.000 - CDS 21762 - 22517 560 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 34 11 Op 2 8/0.000 - CDS 22504 - 22947 303 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 35 11 Op 3 . - CDS 22940 - 24361 1662 ## COG0215 Cysteinyl-tRNA synthetase - Prom 24382 - 24441 6.7 - Term 24408 - 24449 -0.8 36 11 Op 4 . - CDS 24456 - 24761 275 ## gi|256852088|ref|ZP_05557475.1| predicted protein - Prom 24792 - 24851 9.6 37 12 Tu 1 . - CDS 24882 - 25229 255 ## gi|256852087|ref|ZP_05557474.1| predicted protein + Prom 25057 - 25116 4.3 38 13 Tu 1 . + CDS 25195 - 25386 59 ## - Term 25303 - 25339 -0.4 39 14 Tu 1 . - CDS 25347 - 25775 484 ## gi|256852086|ref|ZP_05557473.1| predicted protein - Prom 25801 - 25860 4.3 - Term 25862 - 25907 8.2 40 15 Op 1 . - CDS 25908 - 27407 1957 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 41 15 Op 2 1/0.000 - CDS 27482 - 28858 1211 ## COG1066 Predicted ATP-dependent serine protease 42 15 Op 3 . - CDS 28872 - 29411 644 ## COG0756 dUTPase - Prom 29453 - 29512 8.0 + Prom 29405 - 29464 8.6 43 16 Op 1 . + CDS 29611 - 29805 245 ## gi|256852082|ref|ZP_05557469.1| predicted protein 44 16 Op 2 . + CDS 29872 - 31221 1643 ## COG3579 Aminopeptidase C + Term 31242 - 31276 2.0 - Term 31232 - 31260 -0.0 45 17 Op 1 . - CDS 31270 - 32205 837 ## COG4639 Predicted kinase - Prom 32225 - 32284 4.1 46 17 Op 2 . - CDS 32291 - 32968 747 ## COG0588 Phosphoglycerate mutase 1 47 17 Op 3 . - CDS 32979 - 33146 162 ## gi|282934870|ref|ZP_06340102.1| conserved hypothetical protein 48 17 Op 4 . - CDS 33148 - 34038 849 ## COG1230 Co/Zn/Cd efflux system component 49 17 Op 5 . - CDS 34047 - 34727 816 ## COG0406 Fructose-2,6-bisphosphatase 50 17 Op 6 . - CDS 34792 - 35544 638 ## COG0730 Predicted permeases - Prom 35604 - 35663 7.1 + Prom 35480 - 35539 6.2 51 18 Op 1 1/0.000 + CDS 35636 - 36208 542 ## COG0693 Putative intracellular protease/amidase 52 18 Op 2 . + CDS 36284 - 36820 765 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 36834 - 36871 5.3 + Prom 36843 - 36902 5.7 53 19 Op 1 . + CDS 36953 - 37207 312 ## LAF_1614 transpot protein 54 19 Op 2 . + CDS 37167 - 38180 791 ## COG2814 Arabinose efflux permease + Term 38185 - 38223 7.1 - Term 38171 - 38209 7.1 55 20 Tu 1 . - CDS 38213 - 39796 1343 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 39819 - 39878 4.6 - Term 39908 - 39952 2.4 56 21 Tu 1 . - CDS 39964 - 40773 563 ## LJ1729 hypothetical protein - Prom 40860 - 40919 4.9 - Term 40927 - 40958 2.1 57 22 Op 1 59/0.000 - CDS 40988 - 41383 668 ## PROTEIN SUPPORTED gi|227525625|ref|ZP_03955674.1| 30S ribosomal protein S9 58 22 Op 2 7/0.000 - CDS 41400 - 41870 799 ## PROTEIN SUPPORTED gi|227525626|ref|ZP_03955675.1| 50S ribosomal protein L13 59 22 Op 3 8/0.000 - CDS 41940 - 42728 827 ## COG0101 Pseudouridylate synthase 60 22 Op 4 34/0.000 - CDS 42728 - 43525 588 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 61 22 Op 5 15/0.000 - CDS 43518 - 44381 1043 ## COG1122 ABC-type cobalt transport system, ATPase component 62 22 Op 6 6/0.000 - CDS 44357 - 45208 716 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 45228 - 45287 8.0 - Term 45247 - 45282 0.3 63 22 Op 7 50/0.000 - CDS 45378 - 45761 620 ## PROTEIN SUPPORTED gi|227525631|ref|ZP_03955680.1| 50S ribosomal protein L17 64 22 Op 8 32/0.000 - CDS 45789 - 46730 1240 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 65 22 Op 9 48/0.000 - CDS 46776 - 47165 652 ## PROTEIN SUPPORTED gi|227525633|ref|ZP_03955682.1| ribosomal protein S11 66 22 Op 10 . - CDS 47195 - 47545 586 ## PROTEIN SUPPORTED gi|227525634|ref|ZP_03955683.1| 30S ribosomal protein S13 67 22 Op 11 . - CDS 47572 - 47688 211 ## PROTEIN SUPPORTED gi|227525635|ref|ZP_03955684.1| 50S ribosomal protein L36 68 22 Op 12 6/0.000 - CDS 47703 - 47924 299 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 69 22 Op 13 28/0.000 - CDS 47996 - 48649 758 ## COG0563 Adenylate kinase and related kinases 70 22 Op 14 53/0.000 - CDS 48663 - 49955 1487 ## COG0201 Preprotein translocase subunit SecY 71 22 Op 15 48/0.000 - CDS 49955 - 50395 734 ## PROTEIN SUPPORTED gi|227525639|ref|ZP_03955688.1| 50S ribosomal protein L15 72 22 Op 16 50/0.000 - CDS 50418 - 50603 294 ## PROTEIN SUPPORTED gi|227525640|ref|ZP_03955689.1| 50S ribosomal protein L30 73 22 Op 17 56/0.000 - CDS 50614 - 51129 848 ## PROTEIN SUPPORTED gi|227525641|ref|ZP_03955690.1| 30S ribosomal protein S5 74 22 Op 18 46/0.000 - CDS 51147 - 51506 580 ## PROTEIN SUPPORTED gi|227525642|ref|ZP_03955691.1| 50S ribosomal protein L18 75 22 Op 19 55/0.000 - CDS 51529 - 52059 892 ## PROTEIN SUPPORTED gi|227525643|ref|ZP_03955692.1| ribosomal protein L6 76 22 Op 20 50/0.000 - CDS 52084 - 52482 667 ## PROTEIN SUPPORTED gi|227525644|ref|ZP_03955693.1| ribosomal protein S8 77 22 Op 21 50/0.000 - CDS 52506 - 52691 335 ## PROTEIN SUPPORTED gi|227525645|ref|ZP_03955694.1| 30S ribosomal protein S14 78 22 Op 22 48/0.000 - CDS 52706 - 53248 897 ## PROTEIN SUPPORTED gi|227525646|ref|ZP_03955695.1| ribosomal protein L5 79 22 Op 23 57/0.000 - CDS 53263 - 53577 526 ## PROTEIN SUPPORTED gi|227525647|ref|ZP_03955696.1| ribosomal protein L24 80 22 Op 24 50/0.000 - CDS 53599 - 53967 600 ## PROTEIN SUPPORTED gi|227525648|ref|ZP_03955697.1| ribosomal protein L14 81 22 Op 25 50/0.000 - CDS 54000 - 54266 450 ## PROTEIN SUPPORTED gi|227525649|ref|ZP_03955698.1| 30S ribosomal protein S17 82 22 Op 26 50/0.000 - CDS 54289 - 54486 316 ## PROTEIN SUPPORTED gi|227525650|ref|ZP_03955699.1| ribosomal protein L29 83 22 Op 27 50/0.000 - CDS 54476 - 54916 754 ## PROTEIN SUPPORTED gi|227525651|ref|ZP_03955700.1| 50S ribosomal protein L16 84 22 Op 28 61/0.000 - CDS 54916 - 55590 1146 ## PROTEIN SUPPORTED gi|227525652|ref|ZP_03955701.1| ribosomal protein S3 85 22 Op 29 59/0.000 - CDS 55604 - 55957 565 ## PROTEIN SUPPORTED gi|227525653|ref|ZP_03955702.1| 50S ribosomal protein L22 86 22 Op 30 60/0.000 - CDS 55981 - 56256 473 ## PROTEIN SUPPORTED gi|227525654|ref|ZP_03955703.1| 30S ribosomal protein S19 87 22 Op 31 61/0.000 - CDS 56278 - 57114 1453 ## PROTEIN SUPPORTED gi|227525655|ref|ZP_03955704.1| 50S ribosomal protein L2 88 22 Op 32 61/0.000 - CDS 57130 - 57426 490 ## PROTEIN SUPPORTED gi|227525656|ref|ZP_03955705.1| ribosomal protein L23 89 22 Op 33 58/0.000 - CDS 57426 - 58043 1032 ## PROTEIN SUPPORTED gi|227525657|ref|ZP_03955706.1| 50S ribosomal protein L4 90 22 Op 34 40/0.000 - CDS 58058 - 58687 1067 ## PROTEIN SUPPORTED gi|227525658|ref|ZP_03955707.1| 50S ribosomal protein L3 91 22 Op 35 . - CDS 58715 - 59149 725 ## PROTEIN SUPPORTED gi|227525659|ref|ZP_03955708.1| 30S ribosomal protein S10 - Prom 59252 - 59311 10.2 - Term 59284 - 59325 6.7 92 23 Tu 1 . - CDS 59330 - 60859 1402 ## COG1288 Predicted membrane protein - Prom 60896 - 60955 10.1 - Term 60948 - 60997 3.1 93 24 Op 1 51/0.000 - CDS 61009 - 63099 2869 ## COG0480 Translation elongation factors (GTPases) 94 24 Op 2 56/0.000 - CDS 63136 - 63606 794 ## PROTEIN SUPPORTED gi|227525664|ref|ZP_03955713.1| ribosomal protein S7 95 24 Op 3 . - CDS 63621 - 64028 699 ## PROTEIN SUPPORTED gi|227525665|ref|ZP_03955714.1| 30S ribosomal protein S12 - Prom 64157 - 64216 13.3 + Prom 64081 - 64140 5.4 96 25 Tu 1 . + CDS 64211 - 64894 430 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases + Term 64913 - 64952 8.6 - Term 64897 - 64945 11.6 97 26 Op 1 58/0.000 - CDS 64964 - 68632 5080 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 98 26 Op 2 . - CDS 68644 - 72282 4340 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit - Prom 72303 - 72362 6.9 - Term 72345 - 72389 7.8 99 27 Op 1 . - CDS 72501 - 74984 2094 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 75010 - 75069 6.3 100 27 Op 2 . - CDS 75082 - 75927 841 ## COG2364 Predicted membrane protein - Prom 75993 - 76052 12.3 - TRNA 76082 - 76156 79.8 # Gly GCC 0 0 - TRNA 76216 - 76289 75.8 # Pro CGG 0 0 - TRNA 76332 - 76406 87.5 # Gly GCC 0 0 - Term 76290 - 76325 4.4 101 28 Op 1 . - CDS 76479 - 76970 330 ## gi|256852025|ref|ZP_05557412.1| predicted protein 102 28 Op 2 . - CDS 76963 - 77562 167 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 103 28 Op 3 . - CDS 77575 - 78174 202 ## LEGAS_0019 hypothetical protein 104 28 Op 4 . - CDS 78174 - 78989 706 ## LEGAS_0018 integral membrane protein - Term 78997 - 79038 5.1 105 28 Op 5 . - CDS 79048 - 79464 599 ## gi|297205107|ref|ZP_06922503.1| choline binding protein - Prom 79506 - 79565 8.2 + Prom 79630 - 79689 6.9 106 29 Tu 1 . + CDS 79730 - 80608 540 ## LBA1934 transcriptional regulator + Term 80629 - 80678 10.1 - Term 80625 - 80657 2.5 107 30 Op 1 3/0.000 - CDS 80670 - 82193 2189 ## COG1190 Lysyl-tRNA synthetase (class II) 108 30 Op 2 2/0.000 - CDS 82215 - 83243 471 ## PROTEIN SUPPORTED gi|145637283|ref|ZP_01792944.1| ribosomal protein L11 methyltransferase - Prom 83267 - 83326 7.5 - Term 83275 - 83312 2.1 109 30 Op 3 1/0.000 - CDS 83331 - 84212 1082 ## COG1281 Disulfide bond chaperones of the HSP33 family - Term 84219 - 84248 0.5 110 30 Op 4 14/0.000 - CDS 84253 - 86388 1200 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 111 30 Op 5 . - CDS 86472 - 87710 780 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 112 30 Op 6 . - CDS 87730 - 88080 271 ## PROTEIN SUPPORTED gi|161506858|ref|YP_001576812.1| putative ribosomal protein 113 30 Op 7 . - CDS 88077 - 88448 457 ## LGAS_0273 septum formation initiator 114 30 Op 8 3/0.000 - CDS 88515 - 88757 356 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 115 30 Op 9 7/0.000 - CDS 88769 - 92254 2934 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 116 30 Op 10 . - CDS 92257 - 92814 561 ## COG0193 Peptidyl-tRNA hydrolase - Prom 92916 - 92975 10.2 + Prom 92765 - 92824 8.1 117 31 Tu 1 . + CDS 92984 - 93670 764 ## COG0517 FOG: CBS domain Predicted protein(s) >gi|260196041|gb|ACQN01000026.1| GENE 1 241 - 747 490 168 aa, chain - ## HITS:1 COG:SP0950 KEGG:ns NR:ns ## COG: SP0950 COG0454 # Protein_GI_number: 15900828 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 12 151 10 147 166 79 31.0 2e-15 MDFKASLPQGISASLLSEQDLFQIYKLCQTQPQYFKQMGQILSYQHLKHLLTALPDSGLS QDSKQFWGFWKGKELIAFCELILKFPEEDAAIIGWFMVKKSATGRGLGSALIRSLKMHLV NFKIKEIILSYSDKNYSGKHFWQGQGFEPTGEMEKYPEVTMITMSCKL >gi|260196041|gb|ACQN01000026.1| GENE 2 761 - 1789 965 342 aa, chain - ## HITS:1 COG:SP0182 KEGG:ns NR:ns ## COG: SP0182 COG1619 # Protein_GI_number: 15900119 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Streptococcus pneumoniae TIGR4 # 3 341 2 339 343 477 65.0 1e-134 MKVKKVAIVSLSSGVLGEDAVSHERKLGLKRLKDYGLKVEFMPHSLKGIDYIKKHPEKRA EDLLAAFRDDSIDMILCAIGGDDTYRLLPYFFEHDELKEAVKQKSFLGFSDTTKNHFMLN KVGLKTFYGQAFLTDVCELDREMLPYSKSYFEELISTGTIKEIHPSDVWYEERSDFSRQA VGSPRISHKNTGFELLRGTKQFSGEILGGCIESLYDFFDNSRYEDTVSLTQKYHLFPSLD EWRGKILLLESSEAKSTPEKYRKMVRALANYGIFDVVNGVLVGQPQDKVYYEEYKDILLE EIKNADLPIVYNLNIGHSTPRCIIPFGIKAEVDMNQQVIKFY >gi|260196041|gb|ACQN01000026.1| GENE 3 1893 - 2321 468 142 aa, chain - ## HITS:1 COG:lin0458 KEGG:ns NR:ns ## COG: lin0458 COG1959 # Protein_GI_number: 16799534 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 1 135 1 136 155 119 48.0 2e-27 MKYSYKFSDAIHLLSYLEIFKNGDLSSKAIAASIESNPSIIRQLMSDLRNVGLIETRQGK ASAKLTRKPSAITLFEIYMAIDMDHELIHVDPQTNLKCPVGRNIQTSLNGFYEQIQNSAF NQMKAITLQDVIDDILEKEKMY >gi|260196041|gb|ACQN01000026.1| GENE 4 2347 - 3198 1234 283 aa, chain - ## HITS:1 COG:L29875 KEGG:ns NR:ns ## COG: L29875 COG0702 # Protein_GI_number: 15674152 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 1 282 1 281 281 192 40.0 4e-49 MKYAITAATGNLGQVAVKLLNKLVGEDNVIVVARNLEKAKKLFPNNEVRQGDYDDKDAMI KALTDVDKVLFISSQPGGKVDRATAQKNVVDALVKNNVKFVAYTSFPKAENSDNWLASDH KITEEAIKKAGLHHSFLRNNWYLENEMGFLQSGANKQAALYWAKGYAGWALEREYAEAAV NVLTAETSKEIYEFSGKRANYEDLGHALQAATGNNFEIKHVSQDEYVKYLENTGLKPEMA TLFASFEQPIYDGALDEDTTDLADVLGHSSLSLEAAIKEILAR >gi|260196041|gb|ACQN01000026.1| GENE 5 3373 - 4419 736 348 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 9 341 519 860 860 288 47 3e-89 MTDKKDIRILAYESSCDETSTAVIKNGREIESLVVATQIKSHQRFGGVVPEVASRHHIEV ITQITKEALSEAKVTWNDIDAIAVTYGPGLVGALLIGVSAAKAASMATGIPLIGVDHIMG HIMAAQLEDEIEYPALALQVSGGHTELVLMHDPINFEIIGDTRDDAAGEAYDKIGRVLGV NYPAGKTIDTWAHQGNDTFNFPRAMLEDDDYDFSFSGLKSAFINTCHHADQIGEKLDKYD LAASFQAAVVDVLSHKTIRAIKEFKPKTFVLGGGVAANRGLRERLEAEIGKLDTKPKVII PPMKLCGDNAAMIGAAAYNLYKAGKFSGLDLNADPSLELPYADAILDR >gi|260196041|gb|ACQN01000026.1| GENE 6 4416 - 4970 545 184 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227894610|ref|ZP_04012415.1| ribosomal protein ala-acetyltransferase [Lactobacillus ultunensis DSM 16047] # 1 178 1 179 190 214 57 1e-54 MLKKFRHFFKEEPEVNLNFTPYVINLAGRTMQVMQASEMNIPDLLELEKKVYQGKQPWSS FSFASELRKKHNSLYLVIYDKAQLVGFIGGRFIPCEGHITNIAVAPAYQGQGIGHYLINL IIEIAKKNGAAQVSLEVRADNEPAQKIYKSLGFEAQFVRTGYYQDDHMDAINMVLHLEGK EDTK >gi|260196041|gb|ACQN01000026.1| GENE 7 4954 - 5682 879 242 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 42 232 1 191 380 343 90 0.0 MKILSVSTATNFLTISLSENEKLIKQVEEKDQRNHSEHLDPMIDKLLKDCNLSLNQIDRF AVAIGPGSYTGLRIGITTMKMFASILNKEIVGISTLQALAANKQTADSLTLVCLDARNDN FFAGAYTNGTEVIPDGHYSLEALLKDLKIVLADKNIQKLIILGSGMDNHKDLLNSLSCDI IWGNEEENLVHASQIAKLALTSEVIDADQLVPRYLRRTQAEMDWHKKTGKPFEPDSNYVE EV >gi|260196041|gb|ACQN01000026.1| GENE 8 5682 - 6221 672 179 aa, chain - ## HITS:1 COG:no KEGG:LBA0387 NR:ns ## KEGG: LBA0387 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 3 171 10 178 178 202 65.0 4e-51 MKKFFFKLSLQELIFLALVIAIKIILGRFSFGPTYVKVGLGFIGSVALGYFFGPVWGAVG GGISDLVSSALFGNEGGFFIGFTLTAMLAPMIYGAFFYKKTIKIWRIVAASLLVTIFVNI LLNTIWLHFIYKMSFTVALTARLLKEIIVPWIQMIIIFFVLNGLQRVNERKEKLEKSRM >gi|260196041|gb|ACQN01000026.1| GENE 9 6221 - 6799 459 192 aa, chain - ## HITS:1 COG:no KEGG:LBA0387 NR:ns ## KEGG: LBA0387 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 8 171 12 175 178 140 42.0 2e-32 MNKYKDNFFKLSLQNLVLLGLVIAIKLCLSSVAIGPAFFKISLAFLGSVALGYLFGPVWG GLGGLVSSLLHLIIFGDKANILLGTMLSAILVPMIYGFFFYNKEIKAWRVVMGHLTVTVL INIMLNNYLFSLVSGVSLQVAFIQRLPKEVILPWGQMILMYFVLKGLVPIRQRMVSFERN QSKAQEVEGEAN >gi|260196041|gb|ACQN01000026.1| GENE 10 6792 - 7520 620 242 aa, chain - ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 1 238 3 241 245 117 30.0 2e-26 MKYQENYQIQYADCDETGHVKLQALIDIFMHVSNRQLENSQAGSKEMAMKNQGWVVTQYH MDFKRLPVVAEQVKIITKPVGYNRFFEYRDFSLLVDDKEIIKVQSQWVILDLEKRRIVPA DSEVMARFGSPLLKKNPKMRRLRKQDNYEQTRQYRVRYDDLDLNHHMTNSHYFSWMEDML ERAFLNAYEPKSVDIKFDKEVLYGQKVTSSLLINEQTSYHLISQGDQVATIAEITWKKRN DE >gi|260196041|gb|ACQN01000026.1| GENE 11 7523 - 8377 937 284 aa, chain - ## HITS:1 COG:all4680 KEGG:ns NR:ns ## COG: all4680 COG0313 # Protein_GI_number: 17232172 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Nostoc sp. PCC 7120 # 12 278 8 274 285 250 47.0 2e-66 MQIQSSFKEEKGKLYLVPTPIGNLEDITLRAKRILQEADYIAAEDTRTSGIMLDKIGIHN KMVAFHKFNSKQKAPELVQMMKEGAVIAEISDAGMPVISDPGYILVQECIKANIPVVPLP GPSAFATALIASGFDAQPFTYYGFLPRKASEQRPYFEAMNQAKATAIFYEAPHRLTKTLA TLASVLDDDRQIVCARELTKIHEEFVRGSIKEVLEHFEQVDPRGEFVVLVSPNTDEAPKV SMEELVKLVDQLVATGASKKDAIKQVAKQNDVSKNDLYDFYHQG >gi|260196041|gb|ACQN01000026.1| GENE 12 8361 - 8717 345 118 aa, chain - ## HITS:1 COG:SPy0405 KEGG:ns NR:ns ## COG: SPy0405 COG4467 # Protein_GI_number: 15674542 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 12 103 15 105 107 63 36.0 1e-10 MDPYSELRQVHQNLEAMSKMVAGLENDILDTLKENTELKMENQLLREKLDKLTAEKAGKE VKSQSGLASLRKIYESGYHICNMYYGTHRDPSSDCMFCLDILDNFEHKGKGAGHANTK >gi|260196041|gb|ACQN01000026.1| GENE 13 8735 - 9583 716 282 aa, chain - ## HITS:1 COG:BH0044 KEGG:ns NR:ns ## COG: BH0044 COG0470 # Protein_GI_number: 15612607 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Bacillus halodurans # 3 165 5 168 328 110 38.0 3e-24 MIDLKQAAPKQTIFLKNAFQQDKLAHAYLFVDNLTQRALATAYWLACLANCTGDNRPDGT CINCKRVLSGNHPDVFLVRPEGKQSLSIDQIRPLKEELAKSPVEGTRRFFFIENAQTLTM PAANALLNLLEEPVAPVTTILLTNNAQQILPTIRSRTQILEFNDLVENSSKDQDLLLYGF SQEDLDNLGETGELDQAVKYFYQELLENNDLAVISAHKLAGMIKNKVQEEYVFYLLKKFC SDGIKKQQLFGNQTLLERLLDCDKMKFSNVSFLNRLDYLALS >gi|260196041|gb|ACQN01000026.1| GENE 14 9583 - 9903 469 106 aa, chain - ## HITS:1 COG:BS_yaaQ KEGG:ns NR:ns ## COG: BS_yaaQ COG3870 # Protein_GI_number: 16077097 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 106 1 109 109 108 52.0 3e-24 MKLIYAIVQNKDAGRLSKKFNENNVRATKLASTGGFLSEGNTTFIIGVQDEKVDSVLELI KDCSQKRQEFVNPVVNSHAGEFTQPLEITVGGAIVFVTPVDEFKRF >gi|260196041|gb|ACQN01000026.1| GENE 15 9903 - 10550 834 215 aa, chain - ## HITS:1 COG:L3846 KEGG:ns NR:ns ## COG: L3846 COG0125 # Protein_GI_number: 15672380 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Lactococcus lactis # 1 212 1 211 211 216 53.0 2e-56 MAGYFITFEGPDGAGKTTVLEKLVEEIKKKVTCEILVTREPGGSKIAEAIRDIILNPENT EMDDRTEALLYAAARSQHMAEVVFPALEAGRLVFSDRFVDSSLAYQGMGRNLGIEKVAEI NQFATDGLNPNLTLFLDIDPKAGLARIAKVRPDKEDRLEKEKLSFHQKVYTGYQEIVKRY PERIKVVDASQDIDQVIADCLAILKQQLPDLFEVK >gi|260196041|gb|ACQN01000026.1| GENE 16 10641 - 10880 274 79 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00381 NR:ns ## KEGG: LCRIS_00381 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 5 79 5 79 79 69 56.0 3e-11 MIFGKKTQVKEIGDQHLMATISKLQRQLLNEQELDPTTVDYSEDNIMASKILKAKYSFLY SVARQRHTKSSITNNAITQ >gi|260196041|gb|ACQN01000026.1| GENE 17 10877 - 11476 402 199 aa, chain - ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 199 1 198 198 261 62.0 6e-70 MQYPLPIARLIESYMKLPGIGEKTATRLAFYTLDMPADDVEQFAQSLKDVKTLLHQCSIC GNITETDPCQICRDSNRDRSTVMVVEQPKDVMAFEEMGEYDGMYHVLHGVLSPMEGIGPE DINIKSLITRLQKDDDIKEIIIALNSTPEGESTAMYIAKLLKPAGLKVTRLASGLAVGTD IEYANSITLKRAVQGRIDL >gi|260196041|gb|ACQN01000026.1| GENE 18 11476 - 11805 504 109 aa, chain - ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 13 108 2 97 99 102 62.0 2e-22 MAKRPNFGGMGGMNMQQMMKQAKKLQAQMQEEQANITAQEFVGKSADDIVTATFSGDRRL KDIQIKPEAIDPEDPDMLQDLIIDAVNKGLTQIDQATQAGLGKYTKGLF >gi|260196041|gb|ACQN01000026.1| GENE 19 11846 - 13627 1786 593 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 593 1 579 579 436 42.0 1e-122 MAYQALYRKWRPRTFDSVVGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAK ALNCLNLQDGEPCNECENCKAADSGAMPDIIEIDAASNNGVDEIREIRDKVKYAPTQGKY KVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISK QNLVDRMKFILEQEDIPYENQALQVIAQVADGGMRDSLSILDQLLSFEKEKVEYKDALNI TGYAAREATEQLFLNLLNQKVSESLELSHKLLQDGATAKNLLSELISLATETMLVLKANK DSEFLTKDFTKQITDVPEKRYFQLITAANEALNDLRFTNQEEIPLDVFLVKIANPVKEMV EKVADSHNSEINPAINQELADLKAQVAALTKKVSQSSGFATNNQVFKIDDAKKKPQSPKA SEPQAKPKPKRKKTVNSELNRQAVYAVLEKATKKDLEDVRNVWPDLQSVLGVSEQALLKV LEPVAASHNRVVMKCKYAFWFERTSENTNLMATLNSELAKFLKHDSEIVLVPDADWLQVR KDFLAKHKDEILARQKQGSAEIEVDQQQEDSQEKEVIAKAKEVFGSDNINVKD >gi|260196041|gb|ACQN01000026.1| GENE 20 13786 - 14310 431 174 aa, chain - ## HITS:1 COG:BH0033 KEGG:ns NR:ns ## COG: BH0033 COG0590 # Protein_GI_number: 15612596 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Bacillus halodurans # 9 157 7 154 159 150 48.0 8e-37 MFSSEEKKHYMELAFAEAKKAEAQDEVPIGAIVVDPKGQVIGRGYNRRELDNVATHHAEI LAINEACKTLNSWRLINCSLFVTLEPCAMCAGAIINARLKEVFYGAPDHKAGASGSVVDL FAVEKFNHHPQVIRGLYRDKASSMLTNFFRTIRAKQKEKKLKAKENKASSSQID >gi|260196041|gb|ACQN01000026.1| GENE 21 14320 - 14919 705 199 aa, chain - ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 4 199 5 200 201 215 54.0 5e-56 MAEQYFTENPNTKHDLRVIDYHLAGIDLKLTTDAGVFSKNRVDYGSGVLIRNMLEENPVS GNILDVGCGYGPIGLFAAKKWPDRQVDMVDVNERAMDLARKNAEVNGVTNVNIFASSVYE NVDKQYAMILTNPPIRAGKNIVSEILEKSYEHLLVGGKLLVVIQKKQGAPSAKKLMETTF GNCEIVERDKGYYILRSVK >gi|260196041|gb|ACQN01000026.1| GENE 22 15015 - 15377 572 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525592|ref|ZP_03955641.1| ribosomal protein L7/L12 [Lactobacillus jensenii JV-V16] # 1 120 1 120 120 224 100 1e-57 MALDTEKIIEELKGATILELNDLVKAIEEEFDVTAAAPVAAAGAAAGAAAKTEFDVELTE AGQEKVKVIKAVREITGLGLKDSKDLVDGAPKVIKEGVSEDEANDIKAKLEEVGATVTVK >gi|260196041|gb|ACQN01000026.1| GENE 23 15443 - 15961 839 172 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525593|ref|ZP_03955642.1| 50S ribosomal protein L10 [Lactobacillus jensenii JV-V16] # 1 172 1 172 172 327 100 1e-88 MEVNQLSKAAIAAKEKLVDAFAEELKAAKAILVIDYLGLTVDEVTNMRKELRENDVKMKV IKNTYLRRAAKKAGIEGLEDTFVGPTAVIYTDNADDITEPARIVSKYEDDFDVINIKGGM LEGKLTSKEEIKELASIPGREGLLSMLVSVLQAPVRDFAYAVKAVAESKDED >gi|260196041|gb|ACQN01000026.1| GENE 24 16143 - 17063 263 306 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 8 295 9 318 319 105 25 7e-22 MRQYLVFDIGGTNLKYALLDSAGNIIEKDKKPTVKSGLNDFLKEMYEIADQYKGKFKGIA ISCPGKIDVDNKIIHFGGSLPFLDGANIQELFGDKYGVPVGVENDGKAAALAEMWLGALK DVVSGEMLTLGSEVGGGIVVGGQLIHGAHFQAGELSFMRYDMNCADWSGFTGQKGSAVNM IKRVNEALGNSDLEDGQKAFEAINAGNAQALQIFEEYCADVANIILSVQAVVDGERVVIA GGISAQDIVIETIRKQYQALANKFYRVNNELTMPEIVRAKFENDANIYGALYALLLDING QSEEAK >gi|260196041|gb|ACQN01000026.1| GENE 25 17165 - 18181 907 338 aa, chain - ## HITS:1 COG:CAC1488 KEGG:ns NR:ns ## COG: CAC1488 COG0463 # Protein_GI_number: 15894767 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 3 338 2 338 338 271 42.0 2e-72 MKKVLSIIVPCYNSEDYLEKCVNSLVAIRDDVEIILVDDGSKDKTPELIDQFAQKYPEQI IPIHQANAGHGGALNKGFSIASGEYIKVVDSDDWVDYGAYLEIVTFLKHLIQKKQSVDLL ISNYVYDKVGAKHKKVVHFPHLPKNKFFGWDDVKLYLGQYLMMHSLIYRREVITNRAHLQ LPTHVSYDDNIYVFEPLRHVRKMYYLDVNFYHYFIGREDQSVNESVMLKKIDQQLLINKR MIKFYAEHIDPNTSLGKYMKFYLEIITAVSSIILIRGKKSEYIEKKDELWQYIKIKNPKL YHSLKRRPLGICMNLPTRLGNKIASGFYIVAHLVYGFN >gi|260196041|gb|ACQN01000026.1| GENE 26 18358 - 19050 1162 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525596|ref|ZP_03955645.1| 50S ribosomal protein L1 [Lactobacillus jensenii JV-V16] # 1 230 1 230 230 452 100 1e-126 MPKHGKQYLEAAKKVEKNKFYSVAEAMKLVKETSYAKFDATVEVAFNLSVDPKQADQQIR GALVLPNGTGKTQKVIVFAEGPQAEQAKEAGADEVGSDELVEKVQNGYLDFDVVIATPMM MAKVGRLGRVLGPKGLMPNPKTGTVTMDVKKAVENVKAGQVEYRVDKQGLIHAPIGKVSF EDEKLAENFTALRDVILHARPASAKGQYVKSVAVSATFGPGIHLDPLNMN >gi|260196041|gb|ACQN01000026.1| GENE 27 19147 - 19572 693 141 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525597|ref|ZP_03955646.1| 50S ribosomal protein L11 [Lactobacillus jensenii JV-V16] # 1 141 1 141 141 271 99 9e-72 MAKKVINVVKLQIPAGAATPAPPVGPALGQAGINIVGFTKDFNARTADQKGMIIPVVITV YEDRSFEFITKTPPAAVLLKKAAKVEKGSGEPNTKKVAKVTKAQVKEIAETKMQDLNAAD VEAAMRMVEGTARSMGFEVED >gi|260196041|gb|ACQN01000026.1| GENE 28 19703 - 20260 753 185 aa, chain - ## HITS:1 COG:SA0494 KEGG:ns NR:ns ## COG: SA0494 COG0250 # Protein_GI_number: 15926213 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Staphylococcus aureus N315 # 3 181 4 182 182 187 53.0 1e-47 MVETSAKKWYVLHTYAGYEDKVKSDLLSRAQSMGMQDFIFRVVTPEETKVETVRGKKQEV EEKIFPGYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDDEIARILENQGVE AKKPDIDFEIGETVTITEGAFDGMVGKITDIQEDKEKIFVSVDMFGRATTAELDYDQVKK FDGNE >gi|260196041|gb|ACQN01000026.1| GENE 29 20362 - 20532 230 56 aa, chain - ## HITS:1 COG:no KEGG:Ldb1668 NR:ns ## KEGG: Ldb1668 # Name: secE # Def: preprotein translocase subunit SecE # Organism: L.delbrueckii # Pathway: Protein export [PATH:ldb03060]; Bacterial secretion system [PATH:ldb03070] # 1 56 1 56 56 75 66.0 6e-13 MFKFFKSVGQEMKKVTWPTAKQNRRDTTTVIVTSVLFALFLGALDWAFSTLTQMTF >gi|260196041|gb|ACQN01000026.1| GENE 30 20535 - 20684 257 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525600|ref|ZP_03955649.1| ribosomal protein L33 [Lactobacillus jensenii JV-V16] # 1 49 1 49 49 103 100 3e-21 MAVKKAALACTICGSRNYSITASKTRTERLEIKKFCKHCKKMTLHKETR >gi|260196041|gb|ACQN01000026.1| GENE 31 20832 - 21050 301 72 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0346 NR:ns ## KEGG: LGAS_0346 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 72 1 72 72 102 84.0 4e-21 MTEDVLKTRLLDRHMKEVFDWSDSNIPVRDAIWDYFMEKNGKNTLKTEEDMLPFLKDSDD KIEAFVNENLKK >gi|260196041|gb|ACQN01000026.1| GENE 32 21509 - 21658 86 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|297205033|ref|ZP_06922429.1| ## NR: gi|297205033|ref|ZP_06922429.1| sigma H family DNA-directed RNA polymerase sigma factor [Lactobacillus jensenii JV-V16] # 1 49 1 49 183 99 100.0 5e-20 MNTVENLVRKVKENDDIALLLLFERYKPMITAVTKRYFIRCLDENDWNQ >gi|260196041|gb|ACQN01000026.1| GENE 33 21762 - 22517 560 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 1 249 1 249 255 220 46 2e-56 MTSVKGDFVFGRHAGIDFLKNESADKINKVFLQNGVQVEFANQVYGLAKKKHLIVQEVPK NKLDKLVPDANHQGLVLAISSFEYADLDKLVKKIADKENPFLLMLDSIEDPHNLGSILRS ADATGVDGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTA MEGQDYRYWDAKGKCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY QMLNSKMPLSK >gi|260196041|gb|ACQN01000026.1| GENE 34 22504 - 22947 303 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 14 137 10 133 141 121 49 2e-26 MGKIKQLFEKNINPDTLNGQTLAYLGDAVYEIYIRRHLLKGGVVRPQVLQRDATHYVSAK AQAALITKMQDDQILTEAELATFKRGRNAKSHTHAKNTKVATYKLSTGFEAIFGYLELLD KQERIEELATWCIKQVEAGGIDNYDFS >gi|260196041|gb|ACQN01000026.1| GENE 35 22940 - 24361 1662 473 aa, chain - ## HITS:1 COG:BS_cysS KEGG:ns NR:ns ## COG: BS_cysS COG0215 # Protein_GI_number: 16077162 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Bacillus subtilis # 1 473 3 465 466 504 53.0 1e-142 MKIYNTLTRQKEEFKPLVPGKVSMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYKGFDV KYVSNFTDVDDKMINEARAEGITVPELAKRYINAFMEDTTALNIEPATLHPRATEEIKDI IAFIKDLIEKGFAYEVDGDVYYRAKKFNGYGKLSDQDIASLEEGASEHVNEAEFAKKEDP IDFALWKKQKQSDEIAWESPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQDLEFPHHEN EIAQSEAKTGKKFVNYWMHNGFVTVGKDEEKMSKSLHNFVTVHDILKRVDPQVLRFFMAS VQYRKPINYSEENLKQAAIILDKIKNTVLNVQDKLQDTDSQENKALAVAIEDSENRFKEA MDDDFNVQNALSVVYDLLPIINKNISESTSDLSNLKQFLQHLENWMAIFGVDIHKLTAEK VSDDDSEIEELVKKRDEARKHKDFATSDAIRDQLAAMNIVLQDTPKGTKWRRG >gi|260196041|gb|ACQN01000026.1| GENE 36 24456 - 24761 275 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852088|ref|ZP_05557475.1| ## NR: gi|256852088|ref|ZP_05557475.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 101 1 101 101 146 100.0 4e-34 MVILNTLIISRLPDNSLLQILCNIALCVPSTIGMYKVANFKTQVIRLSWWNVFMCIPYIL LLVGYLIWSGWVTIIANIMIVIFSTVGIYTSLNIKFKNLTN >gi|260196041|gb|ACQN01000026.1| GENE 37 24882 - 25229 255 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852087|ref|ZP_05557474.1| ## NR: gi|256852087|ref|ZP_05557474.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 115 1 115 115 181 100.0 9e-45 MKKRPIVLYTCMIIFDTLVISYLPAGTIFQILGSVTLISPIIIGMYAIANFKRDDFRFSL LNALICIPYVFLLVEYLIWSGWIRIVVNIMIVLFSTVGIYAYLSLKSNLNHKKVS >gi|260196041|gb|ACQN01000026.1| GENE 38 25195 - 25386 59 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQVYKTIGRFFIVSLPLVYLFYSINQPLNSFLSNFILPNIGSLFIKQALFNYLLNFTNPT TKN >gi|260196041|gb|ACQN01000026.1| GENE 39 25347 - 25775 484 142 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852086|ref|ZP_05557473.1| ## NR: gi|256852086|ref|ZP_05557473.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 142 1 142 142 194 100.0 2e-48 MQLTMWLVLLISILGLVLIGLSIKKFNNRFNLFVEGIAFLYVAGIFLLDSLVSVKDAINL AYSYMALLFGIFGSLFLIVAWITKAYKNFILQDWISAAALGIMAELIALSFKSPNLAMSD YVILGFTLIIQFLVVGFVKFNK >gi|260196041|gb|ACQN01000026.1| GENE 40 25908 - 27407 1957 499 aa, chain - ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 4 491 5 488 491 559 59.0 1e-159 MAKQKIRVRYAPSPTGHLHIGNARTALFNFLFARHNKGTLVLRIEDTDTARNVEGGSKSQ MENLHWLGIDWDEGPDKGGKYGPYRQSERKEIYNKLIKQLLDEGKAYYSYMTEEELEAQR EEQRAMGIAPHYVYEYQDMTADEIKEAQAKAEAKGLKPVVRIHIPKGKTYEWDDIVKGHI SFESDTIGGDFVIQKRDGMPTYNFAVVVDDHLMEISHVLRGDDHIANTPKQLVVYEAFGW EPPKFGHMTLIINAATGKKLSKRDESVLQFIEQYRDLGYLPEAMFNFITLLGWSPVGESE IFSQRQLIKDFDPKRLSKSPAAFDEKKLEWVNNQYVKTANRDELLDLALNNLQEAGLVDK DITPEKMEWVRQLVNIYSVQMSYTKQIVDFSHIFFEDKQALTEEEVEEIKNDEGRVVIEE FRKQLDLVPRFTAVQVMNAIQATRKATGVKGRKLFMPIRIAATGSMVGPGIGEAIELMGK DKVEHNIDLTLSEMTKQGL >gi|260196041|gb|ACQN01000026.1| GENE 41 27482 - 28858 1211 458 aa, chain - ## HITS:1 COG:L0303 KEGG:ns NR:ns ## COG: L0303 COG1066 # Protein_GI_number: 15674046 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Lactococcus lactis # 1 458 1 453 453 535 57.0 1e-152 MAKAQTRYKCRSCGYISASYLGRCPNCGSWNQFEKEVQEVRKASTKQTPSRLMPTTGLHE PVTLEKVKAEKETRIPTKFSELNRVLGGGIVTGSLVLIGGDPGIGKSTLMLQIMSTLASE HKVLYVSGEESASQIKLRADRLGVGNSGMYLYPETNMSNIRDQISDLKPDFVVIDSIQTM NEPSLDSMVGSAAQVREVTSELMHIAKIDQITVFIIGHVTKEGAIAGPKILEHMVDTVLY FEGDEHHAYRILHSVKNRFGAANEIGMFEMENSGLKEVTNPSSIFLDERLPNSTGSCVVV SLEGTRPILAEVQALVAPTAFGYAKRTTSGIDYNKAALLLAVLEKRGNLMLQNQDAYLTT TGGIKLTEPAIDLAIVMAIGSSYKDMEIPSEDCFVGEVGLTGEVRRVNKIESRIAEAEKI GFKRIFIPKFNMKASFSKRKIEVVPVSTVAQALKLVFG >gi|260196041|gb|ACQN01000026.1| GENE 42 28872 - 29411 644 179 aa, chain - ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 177 1 148 150 135 43.0 4e-32 MKVRGFEICEKYKDADINLPKRQTIASAGYDLEAAEDCVIPSIWRLNFVRIFRLIRNGHE LNERDYEYADQILQPIMVHTGVKAYMPDDEMLIIANRSSNTVKRRLCLPNSIGVVDSDYY NNPNNEGELMIQLINYGVRPIHIKKGERVAQGIFMKYLRTDDDAPVSRQRIGGFGSTKK >gi|260196041|gb|ACQN01000026.1| GENE 43 29611 - 29805 245 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256852082|ref|ZP_05557469.1| ## NR: gi|256852082|ref|ZP_05557469.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 64 34 97 97 119 100.0 5e-26 MAIDHIFVSPEVKSDLVDELIRFALSYARDNHLKVMPLGPTILAYFKENQAALTDLFYKP SLIL >gi|260196041|gb|ACQN01000026.1| GENE 44 29872 - 31221 1643 449 aa, chain + ## HITS:1 COG:SP0281 KEGG:ns NR:ns ## COG: SP0281 COG3579 # Protein_GI_number: 15900215 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pneumoniae TIGR4 # 5 446 4 443 444 472 53.0 1e-133 MAKEISQAAIENFKADFISRKDARIAARAAQTNGIFKASQDTQTQIDLNPTFSVEIETGK VADQKASGRCWMFSALNTMRHPLQKNFKIKGFELSQNYTNFWDKFEKSNWFFENVIATAN QDLGDRKVSFLFATPQQDGGQWDMLCGLIEKYGIVPKSVYPETFSATSSAALNDTLNTLL RKDGLKLRELVKAGKSSKEIESAKDEMLNEVFRVLAISLGVPPKKFDFEYRDDDKNYHID CDITPQEFFKKYVGWNLSDYISTINAPTTDKPFHKVFSVEYLGNVVGGRQVRHLNLPIDE MKELIINQLKSGEVVWFGSNVVKDSERRAGLLDTKLYRRDELFDVDFSMSKAEKLDTGES LMDHAMVITGVDLVDGKPTKWKIENSWGEKAGFKGYFVMSDDWFNSFVYQAVINKKFLSD ELKQTFEDGSKNPIQLLPWDPMGALAMEF >gi|260196041|gb|ACQN01000026.1| GENE 45 31270 - 32205 837 311 aa, chain - ## HITS:1 COG:FN1603_1 KEGG:ns NR:ns ## COG: FN1603_1 COG4639 # Protein_GI_number: 19704924 # Func_class: R General function prediction only # Function: Predicted kinase # Organism: Fusobacterium nucleatum # 1 183 1 174 174 83 27.0 4e-16 MRKIFLLRGAPGSGKSSFIARHHLQPYAISRDSIRLLLADLTVYYEEEADYLHQVIPRHV NVRTEQLVDNLVEHKMSYGETVIVDGTHIAPSAIEHFRPLVDKYRYELFVVDLMQNNTLD NLLKRNQTRMHYDWVKPEVVKQMFNTYKAHPEVPEWAKMITPNQMERALSQRESNLDHFE HVIAVPDGVKEEDFPHVHISNFYFSFNDKFTEKYGTYRNVISIAKTREEAIEEFKLPYFV FKFHHKHFLISAYPIRNEMLDPIRKVKGVWTYSTGLYNLADFVKEFPENKQQHVHQFNLS KLDNSRLLHIW >gi|260196041|gb|ACQN01000026.1| GENE 46 32291 - 32968 747 225 aa, chain - ## HITS:1 COG:SA2204 KEGG:ns NR:ns ## COG: SA2204 COG0588 # Protein_GI_number: 15927994 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Staphylococcus aureus N315 # 1 224 1 228 228 206 44.0 4e-53 MVKLVLVRHGESIANAENIFTGWNDIGLSKRGIDEAKMAGELIKEMPDFAPTHIHTSLLS RAIMTANIISEVNDFLYLPITKTWRLNERHYGALRGINKDKAREIFGVEQIKNWRRGFDE VPPLAKDSLNDRRYDMIDPQILPKAESLHQTQKRLMPYYHEHVASQLIQGKDQLIVAHGS SLRALIKKLESIDNHDIVNLEVPNAEPIVYTMNSELKIIDKKILS >gi|260196041|gb|ACQN01000026.1| GENE 47 32979 - 33146 162 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282934870|ref|ZP_06340102.1| ## NR: gi|282934870|ref|ZP_06340102.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 55 1 55 55 89 100.0 5e-17 MENKYFLVAVLLIVGIYDMSFYYNRRHQPNNQKGLKAYLIFGVILFAAGILALFR >gi|260196041|gb|ACQN01000026.1| GENE 48 33148 - 34038 849 296 aa, chain - ## HITS:1 COG:PH0896 KEGG:ns NR:ns ## COG: PH0896 COG1230 # Protein_GI_number: 14590752 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Pyrococcus horikoshii # 16 290 17 289 295 233 44.0 3e-61 MKQNKITSKYLFVTILNIVITLAEFLGGIFSGSLALLSDAVHNLSDVAAIVISFVAHLIG QKDRDKHKTFGYQRAETLAAFTNGVVLFVISFFLMIEAFERFSKPQEVKGQLMLIIAVIG LVANGISMLVMKHDSSHNLNVRSTFLHMLSDALSSVAVVIGAAIIYFWKSNLVDPLMTLL VSIFVMFEAYKITKKAANILMESNPNVDLDEVKKIVLAFPEVTNLHHLHVWRYSDDLIMM DAHVNVTEKMSVVQLEQLYMKIGQVLKEKLGINHVTLQAEYQRGLKENMIVLNKDD >gi|260196041|gb|ACQN01000026.1| GENE 49 34047 - 34727 816 226 aa, chain - ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 5 181 7 181 224 100 34.0 2e-21 MTTEVYLIRHGETMFNQLNKVQGWADSPLTIKGINDLKKTAEVLSQIHFDNMYSSDLKRA IDTVHLMKNANEVSEIGKIKKIPEFREVFFGSFEGDDIDKTWEAIGQAAGVGPERNVQKI INQVGIYEFREATKKADPRHLAENSEELDTRMVRAIKKLQEETENENRVLLVSHGDFIKT LGIKYWNKSDRLHDIEFPDNGSITRGILSDDGKFEIVDYNIKAEDF >gi|260196041|gb|ACQN01000026.1| GENE 50 34792 - 35544 638 250 aa, chain - ## HITS:1 COG:RSp1268 KEGG:ns NR:ns ## COG: RSp1268 COG0730 # Protein_GI_number: 17549487 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Ralstonia solanacearum # 10 249 7 249 252 84 26.0 2e-16 MTGEVLVFIFLVAAGILAGIVSVVSSMASLVSYPALLLAGVSPVYANVTNTAALIFTGMG AAASSVKELKKSWRNYIKYIILILIGAVIGSFLVVIFPGKIFEKLVPFFVLFSAFLFLVS GKKITYQKREDNQLIAQIEMFAAGVYTGYFGAASGILMLIALLSVSKDNFVVVNAVKNVI GSLGNLIALVIFLFTSKVYWSKAIPLALGLFIGGFLGQKIIKFLPVKAVRVITFIFAVFL AIYLGWQAYC >gi|260196041|gb|ACQN01000026.1| GENE 51 35636 - 36208 542 190 aa, chain + ## HITS:1 COG:SP0804 KEGG:ns NR:ns ## COG: SP0804 COG0693 # Protein_GI_number: 15900697 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Streptococcus pneumoniae TIGR4 # 1 183 1 176 184 157 46.0 2e-38 MKKVAVIFADGCEEIEGLSQVDVLRRLGVPTDMIGLTKLQVHGDHDINITCDKILDDSLL DYDLVSFPGGKPGAEALRDNSQLAQLMKKRHQLGKWNAAMCAAPIALSRYGLLNDTDYTC YPGFEKEIGKECPTGRFHEDIVVTDSKQKIITSRGPATAWAFSYALAQALGIETKTLEDG MLYTYLKDNI >gi|260196041|gb|ACQN01000026.1| GENE 52 36284 - 36820 765 178 aa, chain + ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 3 174 1 167 169 145 40.0 3e-35 MSLVFIEPAKISDLNDIMTIINSSKQFLKEAGSNQWQNGYPDENIIKEDINNGHGWILKV NGKTAGYAACIIGKDPTYANIEDGEWANDEDPYATIHRLAISGDYRGQHLSSQLMSNLIS AMRVKGIENYRIDTAPINKIVQKLATSSGFKYRGIIEVDNEPIDPERVAYELNLIDYE >gi|260196041|gb|ACQN01000026.1| GENE 53 36953 - 37207 312 84 aa, chain + ## HITS:1 COG:no KEGG:LAF_1614 NR:ns ## KEGG: LAF_1614 # Name: not_defined # Def: transpot protein # Organism: L.fermentum # Pathway: not_defined # 1 82 1 82 389 92 57.0 3e-18 MLKYRIQSILFVLVAFMLGCNEYMIVGVLKDIHSDMGIPLATLGILVTLFALVYSICTPF ISLLSARFKRHNVLFAIISDFFSC >gi|260196041|gb|ACQN01000026.1| GENE 54 37167 - 38180 791 337 aa, chain + ## HITS:1 COG:AGl1145 KEGG:ns NR:ns ## COG: AGl1145 COG2814 # Protein_GI_number: 15890690 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 327 110 415 431 108 25.0 1e-23 MFYLQLLVIFLVANTWTAIAPNFISLLLSRVLAGATAGSIISITVVMASFIAPPEKKAAL ISWVFAGFSIANVAGVPIGNTIARVFSWRDSFWMVTILTVIIFVLLFIYAPKDTPQSHAG TPEEAAKISADRKKYIVHPITITNALFIICVTAAQYSFYTYITEIITKYLHFTDSVLSIL LFILGIVSIFGNKLGGYYADRGNMQDIPFLYVIMPVSLVLIGLLINLTNPQSFPLILGII GFVLIAIVCIVNVSYGANVTVLFLDLANEQFPGALDLSSTFNPVFSNFGIAVGSFVSSMA IGSGLFNIGNIVFISAIFGFCSLALVLRLEKLTKEDM >gi|260196041|gb|ACQN01000026.1| GENE 55 38213 - 39796 1343 527 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 3 521 4 528 535 137 28.0 6e-32 MSLKYVKRTHSIIFIILTILRSLEVVFIANITQQLFNWVNDKKISLINLIIVAVIGLIIF WIINLIYEWWYSRIIKEADYNIKSITTKYLIFSEKNTDFLDTSFFTNDLKQIEERYIAAE LEIVTSAIQFLSAVIAALFGSIPLTIIFLLVSFIPGISQKFFGKIIEKKAENWEKKNSIY TERIKETEKTTQVFKLYDQENILWKRIKKVSNDLETSLQRLNFVRGTSNDTVSDLAYLFI TVLPIAVGVYLVSVGNITFGTLIMVSQLSNNFINPLVNITMYLNDRRSSKPMWSKVIVAT KLIEKQHSSKLSFKELNVKNASLKVGNKKLFSNLSFNIKSGEKVLIVAPSGWGKSTFLKA LIGQVKINGGTYVIDNEELNGNFNKAHSYFSMINQEPKLLNDTILFNITLGKNISRNEIN SAIDKAGLKDLIKERGLDYVINKSGENLSGGQKQRIEIARAIIFKRPIMLADEATSSLDE RTSLNIHKLILLNKTATVIEVGHHISEEEKLLFNRVINLENIADKAI >gi|260196041|gb|ACQN01000026.1| GENE 56 39964 - 40773 563 269 aa, chain - ## HITS:1 COG:no KEGG:LJ1729 NR:ns ## KEGG: LJ1729 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 268 1 266 268 125 33.0 1e-27 MTIGSLLKHQRIAMGLTQKEFSNGIISAAHYSKIENNKHEISATDLFLLLKQNQIDLIDF YNDLYFSNDKVDIINKSILISQAFYKKDKEKVRLLNNLIQNSSVSEEEKLRASLMQAILD GTLADMSNKMKKRIKKSLFEHDYWFQNERYLKLLSNSLIVFDNIEIQYYFNQIYEAYYNE IDIQPYGLLKIIAAISINCLHITYVRHDNIIEKKVVELLDKFPQVPDFFVYQTIKNYYVK LFDGKKEDAETIKQFMKQNGLNGYVENLA >gi|260196041|gb|ACQN01000026.1| GENE 57 40988 - 41383 668 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525625|ref|ZP_03955674.1| 30S ribosomal protein S9 [Lactobacillus jensenii JV-V16] # 1 131 1 131 131 261 100 7e-69 MAQQAAYAGTGRRKNSVARVRLVPGNGKITVNKKDVTDYIPFPNLVQDLKQPLALTETEG QYDVVVNVNGGGFSGQAGAIRHGIARALLEIDPDFRGPLKKAGLLTRDPRMKERKKPGLK KARKASQFSKR >gi|260196041|gb|ACQN01000026.1| GENE 58 41400 - 41870 799 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525626|ref|ZP_03955675.1| 50S ribosomal protein L13 [Lactobacillus jensenii JV-V16] # 1 156 1 156 156 312 99 5e-84 MSNCKKTEEFKLRTTPLAKTSEIERKWYVIDATDIALGRLSTVVATILRGKNKPQYTPNV DTGDNVIIINAAKLKLTGKKATDKIYYHHSDFRGGLKAVSAGELLAKNPVRLVELSVKGM LPKNTLGHQEFLKMHVYAGAEHKHEAQKPEVLEINK >gi|260196041|gb|ACQN01000026.1| GENE 59 41940 - 42728 827 262 aa, chain - ## HITS:1 COG:lin2747 KEGG:ns NR:ns ## COG: lin2747 COG0101 # Protein_GI_number: 16801808 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Listeria innocua # 1 249 1 248 248 234 48.0 1e-61 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQRIVVHGSGRTDAGVHALG QVIHFDFPNDNIPANRMVLALNSMMPTDIIFKDAEIVNEDFHVQYSTHGKWYRYIVNQDR FVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSFAASGGQIIDKVRTIYYVKIWQK SEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVINTAPASG LYLYHVFYEEVPEKYRLDKKNN >gi|260196041|gb|ACQN01000026.1| GENE 60 42728 - 43525 588 265 aa, chain - ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 264 2 265 266 252 50.0 4e-67 MSKIIIGRFIPGNSVIHKMDSRGKLIFTFIFIFIIFLANNWQSYLVLVLACLLAIVATKI NLRFFWDGIKPLLGLIFFTSFLQLFFTSGGEIYWKWGILSVSSYGVINSIYIFLRFTLII LMSTVMTLTTAPLAIADAMEWMLKPLKYLHVPVAEIALIMSIALRFVPTLFDQTIKIMNA QRSRGADFNDGGLIKRIKAVVPLLVPLFINSLEVAIDLSTAMEARGYRGSEGRSKYRVLE WSKYDLINLGYFVLLLILLLSFRSK >gi|260196041|gb|ACQN01000026.1| GENE 61 43518 - 44381 1043 287 aa, chain - ## HITS:1 COG:L76755 KEGG:ns NR:ns ## COG: L76755 COG1122 # Protein_GI_number: 15672260 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Lactococcus lactis # 3 287 2 287 288 283 48.0 2e-76 MSIKFEKVDYIYSPKTPFEKKALDNVSFELKENSFVAIIGHTGSGKSTLMQHFNALLKPS AGQIKIAGFTLNAQTSNKHLKKLREKVSLVFQFPEAQLFESTVLKDIEYGPKNLGYSEQE ASELAKKWLKKVGLPVSVGESSPFDLSGGQMRRVAIAGVMAYEPDILCLDEPAAGLDPQG KQEMFNLFKQYQKEGHTVILVTHNMDDVAEYADDVLVLEKGKLLRHGTPEEIFSNSEWLL QHHLAMPTANLFAKKLVENNLNIDLNPLTIDRLANQIEQKLVKENNE >gi|260196041|gb|ACQN01000026.1| GENE 62 44357 - 45208 716 283 aa, chain - ## HITS:1 COG:SP2221 KEGG:ns NR:ns ## COG: SP2221 COG1122 # Protein_GI_number: 15902025 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 279 1 274 275 270 51.0 2e-72 MNKIIEIKNLTFSYLNTSNPILNNLSFSVKENSWTTLIGHNGSGKSTIARLLIGLLVAEK DKKDPYAIKIDGMELNDENIWKIRDKVGIVFQNPDNQFVGSTVEDDVAFGLENKGVSREK MLPLVDEAISQVGMEEFKNSEPAQLSGGQKQRVAIAGILAVKPKIIILDEATSMLDPEGK KSILNLIKKIKQQYNLTVISITHDLEEVEKADEVLVLDNGKIILQDKPEVIFDNANLLNE IGLGLPFIYQLAEKLRQKGFLISKQANTQEKLVKEICQLSLKK >gi|260196041|gb|ACQN01000026.1| GENE 63 45378 - 45761 620 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525631|ref|ZP_03955680.1| 50S ribosomal protein L17 [Lactobacillus jensenii JV-V16] # 1 127 1 127 127 243 100 3e-63 MAYRKLGRDSAHRKAMLREMTTQLIINERIVTTEARAKEIRKTAERMITLGKRGDLSARR QAAAFVRNEIADVKQENDAVVVKSALQKLFSDIAPRYKDRNGGYTRIMKLATARRGDGAP MVILELV >gi|260196041|gb|ACQN01000026.1| GENE 64 45789 - 46730 1240 313 aa, chain - ## HITS:1 COG:BH0162 KEGG:ns NR:ns ## COG: BH0162 COG0202 # Protein_GI_number: 15612725 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus halodurans # 1 313 1 314 314 385 65.0 1e-107 MIEFEKPNITVVDQEDAYGKFVVEPLERGFGTTLGNSLRRVLLTSIPGTALSYIQIDGVL HEFSTIPGVREDVTKIVLNLKKLELKSVADEEKIVELDVEGPATVTAGDLKVDSEVTVLN PDQYICTVAEGGHLHMQIAVKNGRGYVPASENKTDDMPIGVIPVDSLFSPIKKVNYQVES TRVGKRDDYDKLTLEVWTDGSITPSDALSFASKILIEHFKVFKFSDAQTDFGGEVMVEKE DDKKERQLEMTIEELDLSVRSYNCLKRAGINTLQELTDKSESDMMRVRNLGRKSLEEVKN KLADLGLSLRHED >gi|260196041|gb|ACQN01000026.1| GENE 65 46776 - 47165 652 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525633|ref|ZP_03955682.1| ribosomal protein S11 [Lactobacillus jensenii JV-V16] # 1 129 1 129 129 255 100 5e-67 MPAKKNTRKRRVKKHVESGVAHIHSTFNNTLVMITDVQGNAVAWSSAGALGFKGSRKSTP FAAQMAAEAAAKASMDQGMKHVEVSVKGPGAGREAAIRSLQATGLEITAIRDVTPVPHNG SRPPKRRRV >gi|260196041|gb|ACQN01000026.1| GENE 66 47195 - 47545 586 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525634|ref|ZP_03955683.1| 30S ribosomal protein S13 [Lactobacillus jensenii JV-V16] # 1 116 1 116 116 230 100 2e-59 MARIAGVDLPREKRIVVALTYIYGIGEPTAKKICADAGVSEDIRSKDLTPEDQEKLRAEV DKYRVEGDLRREISMNIKRLVDIGSYRGVRHRRGLPVRGQNTKNNARTRKGSKRSR >gi|260196041|gb|ACQN01000026.1| GENE 67 47572 - 47688 211 38 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525635|ref|ZP_03955684.1| 50S ribosomal protein L36 [Lactobacillus jensenii JV-V16] # 1 38 1 38 38 85 100 7e-16 MKVRPSVKPMCEHCKVIKRNGRVMVICPANPKHKQRQG >gi|260196041|gb|ACQN01000026.1| GENE 68 47703 - 47924 299 73 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 71 1 71 72 119 83 4e-26 MAKDDVIEVEGKVVDTLPNAMFKVELENGATILAHVSGKIRMHYIRILPGDKVTVELSPY DLTKGRITYRFIK >gi|260196041|gb|ACQN01000026.1| GENE 69 47996 - 48649 758 217 aa, chain - ## HITS:1 COG:BH0155 KEGG:ns NR:ns ## COG: BH0155 COG0563 # Protein_GI_number: 15612718 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Bacillus halodurans # 2 214 1 212 217 239 57.0 3e-63 MINLILLGLPGAGKGTVSERIVDKYKLAHISTGDMFREAMANETPVGLEAKSYIDKGNLV PDEVTAKLVEERLAKPDTNNGFILDGFPRTTAQAEMLEDITKRLNKPLTNVIALDVEESV LVDRLSARFMCKACGATYNKFSKKPKVEGTCDRCGGHEFYQREDDKPEVVRNRLQVNEKM NAPLRDFYQQKGLLSVVNGEQSPEKVFEDTDAILGKD >gi|260196041|gb|ACQN01000026.1| GENE 70 48663 - 49955 1487 430 aa, chain - ## HITS:1 COG:SPy0073 KEGG:ns NR:ns ## COG: SPy0073 COG0201 # Protein_GI_number: 15674307 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecY # Organism: Streptococcus pyogenes M1 GAS # 5 429 6 430 434 429 54.0 1e-120 MFSTLKNAFKDKEIRNKIFFTLFILLLYRIGANIAVPGVNAKAINQVAQTGLVPMLDTVS GGGLDNYSIFSLGVSPYITAQIVIQLLQMDIVPKLVEWGKQGEVGRRKTNQVTRYLTLVV AFIQSIGITLGFNVLTQMGLVKSQTPQTYIQIAIIMTAGTFLLTWLGDEITDKGLGNGVS VIIFAGIISRLPNGIAQIFKEDVSNASSSDRWKGIVFFVAIIIAILVITKVVTWVEQAIR RVPIQYTRRAAVSGSESFLPLKVNVSGVIPVIFASSFIITPSTILMAFQSHQGEQWYQIL TQIFSLQTTPGAVIYTLLIVLFTFFYAFVQVNPEKLSENLQKQSAYIPSVWPGKDTQDFV SKLLMRLSTVGSVYLGLVALLPQLATNIWGLPSSIGLGGTSLLIVIGVVLELSRQVNGLL MKREYVGFIR >gi|260196041|gb|ACQN01000026.1| GENE 71 49955 - 50395 734 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525639|ref|ZP_03955688.1| 50S ribosomal protein L15 [Lactobacillus jensenii JV-V16] # 1 146 1 146 146 287 100 2e-76 MKLHELKPAEGSRRSRKRVGRGTSSGYGKTSGRGQKGQLARQGGHTRPGFEGGQMPLFRT MPKRGFKNINRKEYAVINLDDLNKFENGSEVTIADLKAKGLVKKELSGVKLLANGELKVK VTVKVNKASKAAEEAVNAAGGSVEVI >gi|260196041|gb|ACQN01000026.1| GENE 72 50418 - 50603 294 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525640|ref|ZP_03955689.1| 50S ribosomal protein L30 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 117 100 2e-25 MTDLKITLIRSAAHRLPNQRKVVKALGLGRINSSVVLPDNAATRGALMKIAHLISVEEVN K >gi|260196041|gb|ACQN01000026.1| GENE 73 50614 - 51129 848 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525641|ref|ZP_03955690.1| 30S ribosomal protein S5 [Lactobacillus jensenii JV-V16] # 1 171 1 171 171 331 100 1e-89 MANRNDSRKDRRPKDEIEDQLVAVNRITKVVKGGRRMRFAALVVVGDKKGHVGFGTGKAQ EVPEAIRKAVEAGKKNMISVPTVGTTIPHEVIGHFGSGNILLKPAEAGSGVAAGGAVRIV MDMAGIADITSKSLGSNTPINVVRATIDGLKKLKTREDVLKLRESAKSLQD >gi|260196041|gb|ACQN01000026.1| GENE 74 51147 - 51506 580 119 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525642|ref|ZP_03955691.1| 50S ribosomal protein L18 [Lactobacillus jensenii JV-V16] # 1 119 1 119 119 228 99 1e-58 MISKPDKNKLRLKRHKRIRGKISGTAERPRLSIFRSNKNIYAQIIDDVAGVTLASASTLD KSVSAEGTKLEQAQAVGKAIAEAAKKNNITTVVFDRSGYLYHGRIQALADAARENGLEF >gi|260196041|gb|ACQN01000026.1| GENE 75 51529 - 52059 892 176 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525643|ref|ZP_03955692.1| ribosomal protein L6 [Lactobacillus jensenii JV-V16] # 1 176 1 176 176 348 100 8e-95 MSRIGFKVINVPDSVTVTKEGNVITVKGPKGELSREFSPKITFEQKDGEITVSRSSENDK ALHGTSRANLASMIEGVVDGYKKNLKLIGVGYRAQAQGNKLVLNVGYSHPVEFETPEGIT VKTPSAVDIEIEGISKQVVGQFAAEVRAVRPPEPYKGKGIRYVDEYVRRKEGKTGK >gi|260196041|gb|ACQN01000026.1| GENE 76 52084 - 52482 667 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525644|ref|ZP_03955693.1| ribosomal protein S8 [Lactobacillus jensenii JV-V16] # 1 132 1 132 132 261 100 9e-69 MVMTDPIADYLTRIRNANMAKHDSVEIPASTIKKSLSEILKQEGFIRDYEVTDDNKQGMI KIFLKYGPNGERVISGLKRISKPGLRNYVGAENLPKVLNGLGIAIVSTSAGVITDKEARE KNVGGEVLAYVW >gi|260196041|gb|ACQN01000026.1| GENE 77 52506 - 52691 335 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525645|ref|ZP_03955694.1| 30S ribosomal protein S14 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 133 100 3e-30 MAKTSLKVRNHRPAKFSSRAYTRCERCGRPHSVYRKFGLCRICLKDLAHKGQIPGLKKAS W >gi|260196041|gb|ACQN01000026.1| GENE 78 52706 - 53248 897 180 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525646|ref|ZP_03955695.1| ribosomal protein L5 [Lactobacillus jensenii JV-V16] # 1 180 1 180 180 350 100 2e-95 MANHLAVQYKEEVASALAEKFGYKSTMQIPKIEKIVLNMGVGDAVSNAKNLDEAVEELTL ISGQKPLITKAKKSIANFRLREGMSIGAKVTLRGDRMYDFLDKLINVSLPRVRDFRGVST RSFDGRGNYTLGIKEQLIFPEIDFDKVNRTRGLDVVIVTTAQTDEEARELLQQFGFPFAK >gi|260196041|gb|ACQN01000026.1| GENE 79 53263 - 53577 526 104 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525647|ref|ZP_03955696.1| ribosomal protein L24 [Lactobacillus jensenii JV-V16] # 1 104 1 104 104 207 100 2e-52 MFVKTGDKVKVIAGKEKGKEGTVIRVDRKNDRVVVKGLNMIKKHEKPSQTNQNGGVVEKE GSIHVSNVMLIDPESGKPTRIGHEIVDGNKVRIAKVSGKAIDKK >gi|260196041|gb|ACQN01000026.1| GENE 80 53599 - 53967 600 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525648|ref|ZP_03955697.1| ribosomal protein L14 [Lactobacillus jensenii JV-V16] # 1 122 1 122 122 235 99 5e-61 MIQNESRLKVADNSGARELLVIRVMGGSKRKTGNIGDIVVCAVKQATPGGVVKKGDVVKA VIVRTKSGARREDGSYIKFDENAAVVINADKSPRGTRIFGPVARELREHDFMKIVSLAPE VL >gi|260196041|gb|ACQN01000026.1| GENE 81 54000 - 54266 450 88 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525649|ref|ZP_03955698.1| 30S ribosomal protein S17 [Lactobacillus jensenii JV-V16] # 1 88 1 88 88 177 98 1e-43 MSETIERNRRHVYQGRVVSDKMDKTITVVVDTYKNHPVYKKRIKYSKKYYAHDVNNDAKV GDTVRIMETRPLSRQKRYRLVKIVKRRV >gi|260196041|gb|ACQN01000026.1| GENE 82 54289 - 54486 316 65 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525650|ref|ZP_03955699.1| ribosomal protein L29 [Lactobacillus jensenii JV-V16] # 1 65 1 65 65 126 100 5e-28 MKAKDIRSLTTDQMLEKEKQYKEELFNLRFQQATGQLENTARLRQVRKNIARIKTVLSEE ALKQN >gi|260196041|gb|ACQN01000026.1| GENE 83 54476 - 54916 754 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525651|ref|ZP_03955700.1| 50S ribosomal protein L16 [Lactobacillus jensenii JV-V16] # 1 146 1 146 146 295 100 8e-79 MPLVPKRVKHRREFRGKMRGAAKGGKTIAFGEYGLMALESHWITNRQIEAARVAMTRYMK RGGKVWIRIFPHKSYTAKGVGVRMGSGKGAPAGWVAVVKREKIMFEIGGVSEEVAREALR LASTKLPIKCKFVAKSTEVGGESNEG >gi|260196041|gb|ACQN01000026.1| GENE 84 54916 - 55590 1146 224 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525652|ref|ZP_03955701.1| ribosomal protein S3 [Lactobacillus jensenii JV-V16] # 1 224 1 224 224 446 100 1e-124 MGQKINPLGFRLGVNRDWEAKWFADKDYKETLNEDLRIRDFVAKKLKDASVSTVEIERAA NRINISIHTAKPGMVIGKGGSEVEALRKQLNALTEKQVHINIVEIKKPDLDAELVGDSVA RQLEARIAFRRATRQATQRAMRAGAKGIKVQTAGRLNGADMARREWHTEGSVPLHTLRAD IDYAWVQALTTYGQIGVKVWINRGEILPGRKNRPASKRSKGGNK >gi|260196041|gb|ACQN01000026.1| GENE 85 55604 - 55957 565 117 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525653|ref|ZP_03955702.1| 50S ribosomal protein L22 [Lactobacillus jensenii JV-V16] # 1 117 1 117 117 222 100 6e-57 MAEQITSARAEARTVRIAPRKARLVIDLIRGKSVAEALAILQFTPRAASPIVEKVLRSAI ANAEHNYDLESANLYVSEAYVNEGATLKRFRPRAKGMASPINKRTSHVVVVVSEMND >gi|260196041|gb|ACQN01000026.1| GENE 86 55981 - 56256 473 91 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525654|ref|ZP_03955703.1| 30S ribosomal protein S19 [Lactobacillus jensenii JV-V16] # 1 91 1 91 91 186 100 3e-46 MSRSIKKGPFADEHLLKKVAAQENAEKKQVIKTWSRRSTIFPSFVGLTIAVYDGRKHVPV YVTEDMVGHKLGEFVPTRTFRGHKADDKATK >gi|260196041|gb|ACQN01000026.1| GENE 87 56278 - 57114 1453 278 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525655|ref|ZP_03955704.1| 50S ribosomal protein L2 [Lactobacillus jensenii JV-V16] # 1 278 1 278 278 564 99 1e-160 MAIRKYKPTTNGRRNMTSSDFAEITKKKPERTLLESQSHTAGRNSYGHITVRHRGGGHKQ KYRIIDFKRNKDDVKAVVKAIEYDPNRTANIALLHYTDGIKAYILAPKGLKVGDIVESGV EADIKPGNALPLANIPTGTSIHNIELKPGKGGQLVRSAGTEGQVLGTDGRYTLVRLQSGE VRRILSTCRATIGVVGNEQHSLIQLGKAGRKRWLGKRPQSRGSVMNPNDHPHGGGEGKAP VGRPQPMTPWGKKSRGIKTRNTKKASEKMIIRHRKGNK >gi|260196041|gb|ACQN01000026.1| GENE 88 57130 - 57426 490 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525656|ref|ZP_03955705.1| ribosomal protein L23 [Lactobacillus jensenii JV-V16] # 1 98 1 98 98 193 100 3e-48 MNAHDIILRPVITEKSTNLMDNKKYTFDVLLTATKTQVRNAVEEIFDVKVKSVNIMNVRG KDKRVGRYTGKTARRRKAIVTLTNDSNDIKIFAEEDNK >gi|260196041|gb|ACQN01000026.1| GENE 89 57426 - 58043 1032 205 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525657|ref|ZP_03955706.1| 50S ribosomal protein L4 [Lactobacillus jensenii JV-V16] # 1 205 1 205 205 402 99 1e-111 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQD NNLIILDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSDNENVQLSARNLENVKVVPVNGLN VVDAVNYDKLILTQDAVKRIEEVLA >gi|260196041|gb|ACQN01000026.1| GENE 90 58058 - 58687 1067 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525658|ref|ZP_03955707.1| 50S ribosomal protein L3 [Lactobacillus jensenii JV-V16] # 1 209 1 209 209 415 100 1e-115 MTKGILGRKVGMTQIFTDKGVLVPVTVIEATPNVVMQVKTVESDGYEAVQLGYQDKREVL SNKPEKGHADKAKTSPKRFIREIRGVELKDYEVGSEVTVDTFKEGDVVDVTGTTRGHGYQ GNIKRHGQSRGPETHGSRYHRIPGSMGSIINRVPKGKKLPGHMGVKTVTIQNLVIEKVVA DKNVLLVKGNVPGAKDSLIVVKSATKADK >gi|260196041|gb|ACQN01000026.1| GENE 91 58715 - 59149 725 144 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525659|ref|ZP_03955708.1| 30S ribosomal protein S10 [Lactobacillus jensenii JV-V16] # 1 144 1 144 144 283 98 2e-75 MHIFVVALTQKVAAHQAALPQWCVGNFCRASHLLKKTQGGNLMASQQIRIRLKSYEHGIL DESAAKIVATAKRTGAEISGPVPLPTERTLFTVLRSPHKNKDSREQFEMRTHKRLIDILN PTPKTVDSLMKLDLPSGVDIEIKL >gi|260196041|gb|ACQN01000026.1| GENE 92 59330 - 60859 1402 509 aa, chain - ## HITS:1 COG:FN2106 KEGG:ns NR:ns ## COG: FN2106 COG1288 # Protein_GI_number: 19705396 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 1 508 14 518 518 416 45.0 1e-116 MVKTEQKKHRFPTAYTVIIIVLLLIELLTYFIPAGNYATLSYNSENNNFVITKPNGDTQK IAASQNNLDKYKINIPIQKFKDGTIFKPVAIPNSYERISAQKPNLWQAIVNFFTVQVQGI VQSIDIIAFVLILGGCIGIVNANGAINSGIAALSKKIKGKQVLLIVVIMAFVSIGGTTYG LAEETMAMYPILIPVFLMAGYDTMTVIGTVFLADSIGTMVSTINPFSTIIASNAAGVNFS HALPMRIIMWAFCTFIGMLYVIHYAERVRKHPETSYVYDQYESDRKKFLSSDNLQNPKFT WQQKLTLSIFAIAFIVMIWGVQSQGWYFTEISVIFLAAGYLMAIFSGLDEHKVIDAFVNG ASELLGVALTIGLARGVSIIMDNSHTSDTIMNFFSKQISGLPPLVFIWLLFIVYIVLGFF IQSSSGLAVLSMPIMAPLANVVGIDRASVIDAYNLGQGYISLIAPTGLILMGLMMVGIDF SKWFKWCWKLLVIEFILCLMFLALGLLVY >gi|260196041|gb|ACQN01000026.1| GENE 93 61009 - 63099 2869 696 aa, chain - ## HITS:1 COG:lin2803 KEGG:ns NR:ns ## COG: lin2803 COG0480 # Protein_GI_number: 16801864 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Listeria innocua # 4 694 3 691 695 989 71.0 0 MAKREFPLEKTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETHEGDSQMDWMEEEKER GITITSAATTAQWKDYRVNIIDTPGHVDFTIEVERSLRVLDGAVTVLDAQSGVEPQTENV WRQAETYGVPRIVFVNKMDKIGANFDFSVKTLHERLNANAHAVQMPIGAEDQFEGVIDLI NMVADVYDEDKLGAKWDTVPVPDEYKEEAEKRRGELIEAVADVDDDIMDKYLGGEEITNE ELKAAIRKATLDLKFFPVFAGSAFKNKGVQMMLDGVVDYLPSPLDVKPYVAHDPKDGSEV ELLADDSKPFAALAFKIATDPFVGRLTFIRVYTGSLQSGSYVLNASKNSRERVGRLLQMH ANSRTEISEVFSGDIAGAIGLKNTTTGDSLTDPDHPLILESLEVPDPVIQVSIEPKSKAD RDKLDVALQKLTEEDPTFKAETNAETGQTLIAGMGELHLDIMVERMKREFHVEATIGEPQ VAYRETFTKPTKAQGKFVRQSGGKGQYGDVWIEFTPTKEGEGYEFEDAIVGGVVPREFIP SVDAGLQEAMKNGVLAGYPLIDVKAKLYDGSYHEVDSSEAAFKVAASLALKNAAPKAGAV ILEPIMKVQVITPEEYLGDVMGSITARRGNMDGMEDRSGAKVLNAMVPLSEMFGYATTLR SSTQGRGTFTMVFDHYSPTPKSIQEEIIKKRGGNAE >gi|260196041|gb|ACQN01000026.1| GENE 94 63136 - 63606 794 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525664|ref|ZP_03955713.1| ribosomal protein S7 [Lactobacillus jensenii JV-V16] # 1 156 1 156 156 310 100 2e-83 MPRKGHVAKRTVLADPIYNSKLVTKLINHLMIDGKKAKASSILYDAFSIIQDKTGKEPLE VFEEAMNNVMPVLEVRARRIGGSNYQIPVEVRPERRTTLGLRWLVSYARLRNEHTMDERL ANEIIDASNNTGSAVKKREDVHRMAEANRAFAHYRF >gi|260196041|gb|ACQN01000026.1| GENE 95 63621 - 64028 699 135 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525665|ref|ZP_03955714.1| 30S ribosomal protein S12 [Lactobacillus jensenii JV-V16] # 1 135 1 135 135 273 100 2e-72 MPTINQLVRKGRHSKTTKSKSPALNYGYNSMKKEQVFNPAPQMRGVATRVGTMTPKKPNS ALRKYARVRLSNLTEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGV DGRKQGRSKYGAKKG >gi|260196041|gb|ACQN01000026.1| GENE 96 64211 - 64894 430 227 aa, chain + ## HITS:1 COG:aq_1601 KEGG:ns NR:ns ## COG: aq_1601 COG1989 # Protein_GI_number: 15606720 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Aquifex aeolicus # 8 216 11 233 254 65 26.0 6e-11 MVLNIINFYFGACLASFISVIVQKDGLRWRRSYCLSCKNPLTWSELFPIFSFIFQKGTCR HCKKPIPHFLLFIEIVGGITFLKTDWYSKSGLIEFFLCLLLLTMAIFDYYYQEIPFSIFL ISFLIVIIKDLLFEQISTLITSVLATSVMIIALGILVLLKKFGLGDLFFYLIISFYYSEY LANLVFLFASLAVLTLYPKLKAQNQTHLSLPFLPFLFFSLSILKLLM >gi|260196041|gb|ACQN01000026.1| GENE 97 64964 - 68632 5080 1222 aa, chain - ## HITS:1 COG:SPy0099 KEGG:ns NR:ns ## COG: SPy0099 COG0086 # Protein_GI_number: 15674322 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 1 1189 1 1190 1213 1709 69.0 0 MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPSKDWAC ACGKYKGIRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDV SPRALEEVIYFAAYIVIDAGDTDLEPKSLLTEAEYREKKAKFGNRFVAKMGAEAIKELLQ NVDLDKEVKSLKAELQTATGQKRTRAIRRLDILNAFKDSGNKPEWMVMDTVPVIPPDLRP MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLHAPNIIVQNEKRMLQEAVDALIDNGR RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP MALELFKPFVMHELVKRGVATNIRNAKRKIDREDDDIWDILEYVIKERPVLLNRAPTLHR LGIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL APKDGKPIVTPGQDIVLGNYWLTQAERGREGEGMIFNSPAEATMAYANGDIHFHTRIGLA ADSMPEKTWPKGYEHGVFVTTYGKMIFNQIFPKDFFYVNDPTQDNLTHPLDVKYFLQPGE DIHEKLDNMDLGTPFKKGFLSDAIAAVYKEYKVQRTSDFLDDMKELGYTACTTSGLTIGM ADIPMVSDKDDIVAKAHKKVDVVSKQFRRGLITEQERHDRVISIWNACKDEVQNEVAGIF DPRNPISVMADSGARGNISNFTQLAGMRGLMAAPNGGMMEIPVTSNFREGLTVLEMFMST HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREEDCGTDRGITVHAIKEGDEMIEPLF DRLVGRYTARSVFDPETHEVIAPKGVMMDEELAQEIVDRGVKEVTIRSVFTCNTQHGVCQ KCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTMRNFHNGGVAGAEDITQGLPRVQEL FEARNPKGRATISEVTGVVASIEENPAEHTREITVEGKTDTRTYSVPYTASVAVAEGDEV VRGDKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIADKHVEVMARQMLQKV RVLDPGETDILPGELMDIGEFKDRNKEVIISGGIPATAQSVILGITKAALETNSFLSAAS FQETTRVLTDASIRSKNDPLLGLKENVIIGKIIPAGTGMPVYRSMEPQADVPKPQAVYSI ADIERQLAEENKIDLKSLNKNK >gi|260196041|gb|ACQN01000026.1| GENE 98 68644 - 72282 4340 1212 aa, chain - ## HITS:1 COG:lin0285 KEGG:ns NR:ns ## COG: lin0285 COG0085 # Protein_GI_number: 16799362 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Listeria innocua # 6 1166 6 1167 1184 1670 70.0 0 MFSLDGHLVNYGQHRTRRSFSHIKEVVKLPNLTDVQTESYKWFLNEGISEVFEDIMPIND FSGKLSLDFVGYKLQDAKSTIDEARNHDANYAAPLRVTLKLTNHETGEIKTQDVFFGDLP LMTRSGSFVINGAERVIVSQLVRSPGVYYNCDVDKNARQIFGATVIPNRGAWLEYETDAK NISYVRIDRTRKLPISVLIRALGFGSDSEIQDIYGTNDTLQFTLEKDVHNNPADSRVAEA LKEIYERLRPGEPKTTDSSRSLLFARFFDSRRYDLAPVGRYKINKKLSLKSRLLNQTLAE TLADPDTGEIIAKKGTIVTHAVMETLEKYLDRDDFKMVTYTPSDEGVMQDPITVQEIKVF SKVNPEREVKLISNGHIDADVKCITPADILASINYFFVLQDEIGSTDDIDHLGNRRIRRV GELLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPIVASVKEFFGSSQLSQFMD QNNPLGELTHKRRMSALGPGGLSRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSMA TYAIINKYGFIETPYRRVSWETHKVTDKIDYLTADVEDNYIIAGANTPLNEDGSFKENLI LARHKDDNVEVTPDKIDYMDVIPKQVVSVTSACIPFLENDDSNRALMGANHQRQAVPLIN PHAALVGTGMEYRAAHDSGDALVAEAAGVVEYVDADQIRIRREDGTLDKYELEKYRRSNA NKNYNQTPNVKKGEKIVEGEVIANGPSMAEGELALGQNPLIAFMTWNMYNYEDAIMISER MVKDDVYTSIHIEDYESEARDTKLGPEEITREIPNVGEDALKDLDEQGIVRIGAEVKDGD ILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQNVEVFTREGGDE LSPGVNTMVRVYICQKRKIQVGDKMAGRHGNKGTIAVVVPEEDMPFLPDGRPVDICLNPM GVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGADEDEVYNTLREAGMSKDGKTVIYDG RTGEPFHNRVSVGVMNYLKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEV WALEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGERIPKPGVPESFRVLVKELQSLGL DIRVLDMDHKEIELRDMDEDSSEHLNIDTLSRLAEEQEKKKLAEEATKSEETTSEQSATS SVDQASDDTVSK >gi|260196041|gb|ACQN01000026.1| GENE 99 72501 - 74984 2094 827 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 823 6 815 815 811 51 0.0 MEYSYSSSANQVLAIAKEQAQNFQHRMIGTEHVLLALVIESSGDAGKILRQWNVTSGDVR REIERYTGYGSASKSSYMEMSPRLNMTLNYAKRAAQDGGTKEVKTLHILLGLISTEQVLA AMILKNLNVDLDHLRQDILDDLSEDSGDLSQESDDFFDNLGLNQNKGKGNSKTPTLDSVS INLNKQAREGEIDPVIGRDLETKRVIQILSRRTKNNPVLVGEPGVGKTAVAQAIASCIVK KEVPEDLLDKRVMALDIGSLVAGTKYRGEFEDRMKKILKEIRTDGKVILFVDEMHTLIGA GGAEGAIDASNILKPSLARGDIQMIGATTFDEYQKYIEKDQALARRFQQVRITEPSKEDT LHILEGLKPKYEGFHHVQITEAALKAAVDLSTRYLSNRFLPDKAIDLVDEASATVKINNA VGSNKELQSLDNQLNKVAKQKRAEVEKQNFVQAANLQADEDKLEKQKQALLNKLKESAYR KAVVNEEDIARVVSEWTGVPATQMKKDDTRKLINLEATLHKRVIGQNKAVQAVAKAIKRS RSGIKDENRPIGSFLFLGPTGVGKTELAKAVASAVFGSENNLVRVDMSEYMDTIASSKLI GSAPGYVGYEEGGQLSEQVRRHPYSVVLLDEVEKAHPDVFNLLLQVLDDGFLTDSKGRKV DFRNTVIIMTSNLGSRSLVSDKTVGFTTSEVSQEKERISKVQAATKDFFRPEFLNRIDAT IVFDQLQSSDLRKIVTLLTQKVVARLAKKQITIKFSPAALDVIAKAGFDPENGARPLRRA IQNLVEDKLSDMLISSELVSGQTLKIGAAKGQLKFTVSETKKAVLSK >gi|260196041|gb|ACQN01000026.1| GENE 100 75082 - 75927 841 281 aa, chain - ## HITS:1 COG:BS_yczE KEGG:ns NR:ns ## COG: BS_yczE COG2364 # Protein_GI_number: 16077426 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 5 179 15 186 215 69 25.0 5e-12 MSIVGVTVLSIGATFLRGGKVGLDPFTAINTGISNKLGLGLGVYQLAVNFVIFLLILWLD RKKIGIGTFVNMILVGFEIQFFTQVYEQLFPEKITFLVIVADTVIGLLLFTLGSSLYMGP KLGVAPYDAIAPIFSKRLNSSYKITRIIQDVLFMVGALIMGGPVGFATIIVAFFTGPLIT WWNEHVSDPLVDFIDHLTRPDTRNKVTVLLSAMGRRTYESVARTYEATEVMQARLGRYSN SDLKTQQKIARRNLANSKQTYENCLAQYKMIEEELNKRKNQ >gi|260196041|gb|ACQN01000026.1| GENE 101 76479 - 76970 330 163 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852025|ref|ZP_05557412.1| ## NR: gi|256852025|ref|ZP_05557412.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 163 1 163 163 241 100.0 1e-62 MSKSVKVWSYTLVTILILGLARVYFKELVGSQLWLVNFAITTKTLKLFSLGATLYFFDVV MALSAVSEFEEIATFLWVRELSLIRLWRAFASRFIKYFGSLLLVHLPLISWQNMSFSLLS LLGEVIVWGVAVSIGFSKSNSMSQKISIPLLFGVLRILGMLIG >gi|260196041|gb|ACQN01000026.1| GENE 102 76963 - 77562 167 199 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 2 177 12 201 312 68 26 9e-11 MLKIDNISKQFGKKQVLKDVSLELNPGERVHIIGKNGSGKSTIFKIITNILKADAGQVEL TENDYVGALIENPGFLEYESGLENLKFLGNLNHNYDEQVAMKLMEKFDLDPNDLQAVSKY SIGMRQKLGIIQAIMENQNIVLLDEPTRGIDKEGVATFVKLLDELKQEKRAVIIASHDEI PGLKYDRELLLKNGELASV >gi|260196041|gb|ACQN01000026.1| GENE 103 77575 - 78174 202 199 aa, chain - ## HITS:1 COG:no KEGG:LEGAS_0019 NR:ns ## KEGG: LEGAS_0019 # Name: not_defined # Def: hypothetical protein # Organism: L.gasicomitatum # Pathway: not_defined # 16 191 17 191 193 65 30.0 1e-09 MPTKTKKYIRYSLIGVLALSFFAYWLLIAGMKPKYDIIFAVSFQHGLSIYLQSLLYVLVF FQVLIARKVSNAIAVRKQTKKVISKLAGLIVLEWLLFWIPFLGSYYLFKSHNFFKMGDFK FGLWILLAHMLLMLFLMLSLLLAYRLPFPYIIITLVIAITWSYHLCFEFTLILPKYSKIF DPLYRATHYIYLGICHIFL >gi|260196041|gb|ACQN01000026.1| GENE 104 78174 - 78989 706 271 aa, chain - ## HITS:1 COG:no KEGG:LEGAS_0018 NR:ns ## KEGG: LEGAS_0018 # Name: not_defined # Def: integral membrane protein # Organism: L.gasicomitatum # Pathway: not_defined # 9 267 10 265 269 71 29.0 3e-11 MLSKRTNKIIIIALLGYLVFITYLVLSAINSELRPRTTVDANSFIYMFNEVQPFGVYSSF SLILALLIFPIVGSFAPIFIKNNNGITNVLQRSGYAKFLRKASWQTFLLGMSFSLLSEIF EIILINWNYAPIAFTNNSFYLGQFFNTFSKNSLIQLLAYMVTSSIGWGIFSVFIFACGLY IKKNPLFIVSGAVLGLILLLLPTLYGMMNYFLYAVANVTEISTLIAPGMISFAGQKAPGG IMIIWIISAILFALIAWILMMTWQKKQLRGK >gi|260196041|gb|ACQN01000026.1| GENE 105 79048 - 79464 599 138 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|297205107|ref|ZP_06922503.1| ## NR: gi|297205107|ref|ZP_06922503.1| choline binding protein [Lactobacillus jensenii JV-V16] # 1 138 44 181 181 251 100.0 1e-65 MKLFKKNNVTAMVVAMGLVTGLTGTALASASGYWTITQETVGASGAWSSFGNANLKQSSD NVASFNGDSLPAFFGYNVRLINANGAGRSDWVNLKKDQTTYAHNNSGLKGYYYYADVRSQ PYEPNLSTVKTHFSADRK >gi|260196041|gb|ACQN01000026.1| GENE 106 79730 - 80608 540 292 aa, chain + ## HITS:1 COG:no KEGG:LBA1934 NR:ns ## KEGG: LBA1934 # Name: mutR # Def: transcriptional regulator # Organism: L.acidophilus # Pathway: not_defined # 3 261 4 261 282 127 32.0 4e-28 MYGKTYKKIRIKQKILQKDAARDIVSVASLSHWENGKGDIPFAKFIELLKRIHLTPEEFF KLANISKPSPILKKMRKLYLARDVTGLKTLCTQQIKRYEQKRTVSNLYLMAIVCNYYHLI SNENLLLPKYQLKIISFLSDTPEWTQKHISIFENCTSLLSNKKNYALSKLLLNKWSRIEP WGKMNESGSSLYNIAFQALLNSLTILILRKSYTLARKLLNQINQIKVNNDFLHIELKRTF LANLLIYSQKKDFNAWNNLKKSVEFADFLNQKDIHSEFINLIQQVNKNSKLQ >gi|260196041|gb|ACQN01000026.1| GENE 107 80670 - 82193 2189 507 aa, chain - ## HITS:1 COG:SP0713 KEGG:ns NR:ns ## COG: SP0713 COG1190 # Protein_GI_number: 15900610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Streptococcus pneumoniae TIGR4 # 5 492 3 491 491 662 67.0 0 MAKNELNDQLIVRREKLEELRESGLEPFGRKYERTDLARTLDEKYKGEDKDELNADMPQT KIAGRMMAKRGKGKVGFADIYDRTGKIQIYVRKDIVGEENYQIFKKSDLGDFLGIEGEVM KTDTGELTVRAHHVTFLSKALRPLPDKYHGLQNVEQIYRQRYLDLMTNHDSYMRFVHRTK IIQAIRDYLNNRDFLEVETPVLHNIPGGAEARPFITHHNALDIDLYLRIALELPLKRLIV GGMERVYEIGRVFRNEGVDTRHNPEFTELETYCAYWDFHDVMDEAEGIIKAAAKVVTDDG KVNYQGTEIDLGKPFRRVHMVDLIKEQTGVDFWKPMTLDEAKKVAEEHGIHVEPFWKVGH IINAFFEEFGEKSIVNPTFVYGHPVEISPLAKKNADDPRFTDRFEIFIMGMEYGNAFSEL NDPIDQRERFEAQMAERDAGNDEADVIDEDFVRALEYGMPPTGGLGIGIDRLVMLLTDAP AIRDVLLFPTMRPERIHDEEKDIDLDK >gi|260196041|gb|ACQN01000026.1| GENE 108 82215 - 83243 471 342 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145637283|ref|ZP_01792944.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae PittHH] # 8 323 2 316 326 186 33 5e-46 MTNTNSWKIRDITIPNRVVVAPMAGVSNSAFRVVCKEFGAGLVVCEMISDHGIIYRNKKT LDMLQVAPGEHPMSIQIFGGTEDTLLEAAQYIDQHTAADIIDINMGCPVPKVTKTDAGSK WLLDANKIYQMVHKVVQNVEKPVSVKMRLGWDRKHIFAVENALAAQEAGASMLAMHGRTR KQMYQGEADWETLHEVANALTIPFVGNGDITSPELAKKMIDEVGATAVMIGRAALGNPWE IKDMVHYLETGEKLRPQTVREKIETAKHQLDGLVELKGEKVAVPEFRQQAAYYLKGIPRS ARTRAKINEVWTRQEVYDLLDGFVEEYEKREAAKKARQAMKD >gi|260196041|gb|ACQN01000026.1| GENE 109 83331 - 84212 1082 293 aa, chain - ## HITS:1 COG:lin0254 KEGG:ns NR:ns ## COG: lin0254 COG1281 # Protein_GI_number: 16799331 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Listeria innocua # 1 279 1 282 294 268 47.0 9e-72 MNDYLIKAIDKTKNLRLLAVTSKNLVSEAQKRHDTWSASSAVLGRTLTGGLLLAAASLVD KQELTVRLMGNGPVGACVVTAKSNFTVKGYISNPHIALPPRSDGHIDVKKAVGEGWLQVT KDQGLNEPYTGEVPIVSGEIAEDFTYYLAKSEQIPSAVGLSVFVQANNTIGAAGGFMLQA LPGASDELLSVVEQRIKELPNISSLFLEGITPEQLAEKILGDDCKILEKDKVAYACDCSK EKFSHLLATLKKADLQEMINKDHGAELTCQFCKEKYHFSDTELKAILAEQLEK >gi|260196041|gb|ACQN01000026.1| GENE 110 84253 - 86388 1200 711 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 137 659 110 634 636 466 47 1e-130 MKNKRNRLFTNGLFYIVIFLLMLWGINWMIGGGQSASSSETVSYSQFVKDLKNGKIKDFS IQPANGVYSISGSYKKAKVQKKKTTSYDFLTGASTSAKITKFSTTMLQNDPTVKTVENLA QKHGAKITTQGESQSGSWLSAIITIVPTIFFMVMLWMMMNQSAGGSRGGGGVLNFGKSRV KPEDPTKNRVRFSDVAGEEEEKQELVEVVEFLKDPSRYLKLGARIPSGVLLEGPPGTGKT LLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTSPSIIFIDEIDAIGRR RGNGIGGGNDEREQTLNQLLVEMDGFQGDEGVIVMAATNRSDVLDPALMRPGRFDRKVLV GRPDVKGREAILRVHAKNKPLASDVDLKEVARQTPGFVGADLENVLNEAALVAARRNKTE ITAADIDEAEDRVIAGPAKKDRMISQEERKRVAFHEAGHSICGLVLSDSRTVRKVTIVPR GRAGGYNIMLPKDDQFILTKKQLMEQIVGLMGGRAGEEVVIGDRSTGASNDFEQATAIAH SMVVHYGMTDELGMVQLEKEGQAEYGVKPYSEATAAKIDEAVKKILDEAHKQAIQIVEDN RDKHKLIAEALLKYETLNEKQIMALYKTGEMPEADQKEFPSESKASTYEEAKAAMEKKEH QKDSEKIDSDDSSKSKVAGENSENDITEEKTSVDANDEKTPEKPTDSENQD >gi|260196041|gb|ACQN01000026.1| GENE 111 86472 - 87710 780 412 aa, chain - ## HITS:1 COG:BS_yacA KEGG:ns NR:ns ## COG: BS_yacA COG0037 # Protein_GI_number: 16077135 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Bacillus subtilis # 1 246 1 260 472 134 32.0 4e-31 MDKLKQFLTDYNLDFKNKTIIVACSAGPDSLALVDMLKNWPLRLIVAHFDHQIRQDSYLE TELLEQYCKQNELPLYVKKWENNQNKTEAAARKARYSFLLALAKEKQADYLLTAHHGDDY LENIILKLIRSGDPAEMSSLQAVGQMEGVKLVRPLLYYSKSELTKYLLDKHLAFITDETN LTNENLRNRIRHQLIPLLKEENPTILKNGRTFGQKMMAYQGVTQHTFSAIKLEQVADSWR IKKASLASYTDAEKALFWEWKIWRYYDERVHLEKWQSGPYRILEYQDYVYLFKGQPKFVD KSSIKLDQPFIFQGRKYVISTQVLPQANLIGSFLAQKGNLKMGSAISGSKLPLKNGHHAK SKKFFAQAAIPNILRPAILCLYQNETIVFIEDVYKNQKCANDFIKYYVFLVN >gi|260196041|gb|ACQN01000026.1| GENE 112 87730 - 88080 271 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161506858|ref|YP_001576812.1| putative ribosomal protein [Lactobacillus helveticus DPC 4571] # 2 116 3 118 120 108 46 8e-23 MKFEVGQRIIGKINNVTDYGIFVSLKNKSGLIYKDDFKDGWEREKLKFQPGQEVRVVITQ IKNKKIALSLKRVDDPNLVDPDNQFNNLSQEAFASTLTELTVQAKKTIKDLQDGLN >gi|260196041|gb|ACQN01000026.1| GENE 113 88077 - 88448 457 123 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0273 NR:ns ## KEGG: LGAS_0273 # Name: not_defined # Def: septum formation initiator # Organism: L.gasseri # Pathway: not_defined # 2 121 3 124 125 105 53.0 6e-22 MRGPRIYEASDKELAQLRRKRKKATEEVHRKRRVRYLTIFGLIFVVLGIQLILNITTTHR IKSEIQTNKTSLVEQKETNRRLKIKRNNLKDPDYLAKYIRYKFYYSKKGEQIYNIPEDSK DNQ >gi|260196041|gb|ACQN01000026.1| GENE 114 88515 - 88757 356 80 aa, chain - ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 79 17 95 105 80 55.0 6e-16 MRLDKYLKVSRLVKRRTVAKEMADQGRIEVNGRVVKSSYDVKLDDIISIGYGSRTVKARV LNIRETTKKDEASELYELVD >gi|260196041|gb|ACQN01000026.1| GENE 115 88769 - 92254 2934 1161 aa, chain - ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 45 1111 48 1123 1177 1002 47.0 0 MKLTEIVAQDKELGAFLINTNKNNKSLLTGINERNLPLILLELLKQNNTLLIIEENENKA QRLVDNLAPLLPEEKVQYFAVDSTLATQRATASPDELAQRIKALHLLLSEENGIVVTTAQ GLEYQLNSKDSYTKSNKLIKVGQEYDLKQMNSWLVASGYRKEALVAKPGEFAVRGDILDI YPLDQALPVRIEFFGDEVDTVKSFDVNTQKSISEKDQINVLPASDRIFESANLKKAHNLI KDEIKESLNPKAAEQNFAQVLDELSQGNLPDNYAFLVDYLLPKSCSLLSYLPENGLVVFN DWPAIKKTDGEIAAQNASFISDEIKAGLMLNSQKLRLNLTTVLRQSKHNRLYLSLFQKGM GQLRFDDFFNWPCREPEQFFSQMPLIKSELNKYQKQGYTVILQADNEKRSKQIQSNLIDF DLNLPIVAKDKLVEHKLQITVGQFNQGFYLPQLQLLYLTERELFNKQVHKKRKILNLENA QRLRNYNDLKPGDYVVHVNHGIGRFEGIKTLDVDGQKRDYITITYQGHDQLFVPADQLSL VQKYVGSEGHRPKVNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAARESEKGYAFSKDND LQKEFEDAFPYVETPDQLRSSNEIKADMEKSKAMDRLLVGDVGFGKTEVAIRAAFKAIQD NKQVAFLVPTTILAQQHFDNISDRFKDFPVNVALLSRFQSNTEVKDILEGLKDGKIDLVV GTHRILSKDVEFKDLGLLIIDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLHMSMV GVRDLSVMETPPVNRYPIQTYVMEQLPSVIREACLREMARDGQIFYLHNRIGDIDETVEH LQQLIPEAKIEAIHGRMSENQMSDILYRFLHKQFDILVTTTIIETGIDMPNVNTLIIEDA DHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLEAIRDFTELGSGFKIAMR DLSIRGAGNMLGQQQHGFIDSVGYDLYAQMLDDAIKARKGGHKLAKTNSEIDLGVEAYIP DTYISDQQQKIEFYKKIKVISSEDELNSIEDELLDRFGDYPVATENLLAIAKIKYLADLA GVLEIRYTKDKLKVEFNQASSKHLQGPNIFKALEHVNMKASVALTEQQHLTVLLVKGAMK RRVLFNELETFLTDAGKLVDK >gi|260196041|gb|ACQN01000026.1| GENE 116 92257 - 92814 561 185 aa, chain - ## HITS:1 COG:lin0245 KEGG:ns NR:ns ## COG: lin0245 COG0193 # Protein_GI_number: 16799322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Listeria innocua # 1 185 1 184 184 168 43.0 5e-42 MKLIAGLGNPGKKYDKTKHNTGFMCLDNYMAKNNLSLNQNKFEGLFTKEKIAGKDVILLE PQTYMNESGRSIRQVANFFKIDPSDILIIQDDMDMPIGKIRIRANGKSGGHNGIKSIIRD LGTEKFNRLKIGIRHPENTTVVSWVLTPFNNEQQKLMDAAFSTSEDILTDFISGKDAGYL MNKYN >gi|260196041|gb|ACQN01000026.1| GENE 117 92984 - 93670 764 228 aa, chain + ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 212 1 210 211 228 53.0 6e-60 MLIKSLVYKKDYLTTVNEKATLEEALKILEDSGYRCVPILDDSGTIFRGNIYKMHIYRHK SQGGDMSLPVTHLLKNATKTIKVDSPFFKVFFNIKDLPYIAVLDEDNKFYGILTHNRLLS MLSDAWNLKSSSFVLTVLSDNERGNLIKMSKIISKYTNLASVITLDGNLGASDYVRRTLF TLPAGVSEETLKTIVEKLEKKGYVVAEIEDLQTGTTIRKDEDPDQFTL Prediction of potential genes in microbial genomes Time: Wed May 25 14:05:17 2011 Seq name: gi|260196040|gb|ACQN01000027.1| Lactobacillus jensenii 115-3-CHN cont1.27, whole genome shotgun sequence Length of sequence - 54940 bp Number of predicted genes - 51, with homology - 50 Number of transcription units - 29, operones - 14 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 5/0.000 - CDS 5 - 1132 1224 ## COG0787 Alanine racemase 2 1 Op 2 . - CDS 1045 - 1482 83 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) - Term 1505 - 1542 3.1 3 2 Op 1 2/0.000 - CDS 1553 - 3007 1717 ## COG0513 Superfamily II DNA and RNA helicases 4 2 Op 2 . - CDS 3018 - 4385 1612 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase - Prom 4411 - 4470 2.7 - Term 4433 - 4464 2.1 5 2 Op 3 . - CDS 4483 - 4740 442 ## PROTEIN SUPPORTED gi|227525693|ref|ZP_03955742.1| 50S ribosomal protein L31 type B - Prom 4795 - 4854 6.0 6 3 Tu 1 . - CDS 4867 - 7077 3003 ## LVIS_0239 periplasmic protease - Prom 7128 - 7187 6.6 7 4 Op 1 . - CDS 7194 - 7709 416 ## gi|256852002|ref|ZP_05557389.1| predicted protein 8 4 Op 2 . - CDS 7681 - 8130 473 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Term 8158 - 8201 6.1 9 5 Op 1 9/0.000 - CDS 8204 - 9439 1185 ## COG1668 ABC-type Na+ efflux pump, permease component 10 5 Op 2 . - CDS 9436 - 10341 255 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 10398 - 10457 6.3 - Term 10483 - 10522 6.1 11 6 Tu 1 . - CDS 10537 - 10665 97 ## - Prom 10810 - 10869 9.8 + Prom 10663 - 10722 8.0 12 7 Tu 1 . + CDS 10801 - 11910 1137 ## LAF_1481 hypothetical protein + Term 11994 - 12057 6.1 - Term 11985 - 12041 8.6 13 8 Tu 1 . - CDS 12046 - 14358 3003 ## LJ0913 levansucrase precursor - Prom 14447 - 14506 10.2 + Prom 15047 - 15106 7.3 14 9 Op 1 . + CDS 15126 - 16886 1078 ## LCABL_28670 hypothetical protein 15 9 Op 2 . + CDS 16925 - 17881 1368 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 16 10 Tu 1 . - CDS 17988 - 18815 574 ## gi|297205136|ref|ZP_06922532.1| possible surface exclusion protein PrgA 17 11 Tu 1 . - CDS 18969 - 20522 1759 ## Tery_2946 FkbM family methyltransferase - Prom 20585 - 20644 4.8 - Term 20584 - 20635 13.2 18 12 Tu 1 . - CDS 20656 - 21066 442 ## LJ1575 hypothetical protein - Prom 21122 - 21181 8.7 + Prom 21139 - 21198 11.7 19 13 Op 1 . + CDS 21257 - 22732 2003 ## COG0477 Permeases of the major facilitator superfamily 20 13 Op 2 . + CDS 22732 - 23277 541 ## LGAS_0724 hypothetical protein + Term 23295 - 23331 5.2 21 14 Tu 1 . - CDS 23324 - 23785 329 ## gi|256851988|ref|ZP_05557375.1| predicted protein - Prom 23957 - 24016 7.0 22 15 Op 1 . - CDS 24109 - 24717 526 ## COG1376 Uncharacterized protein conserved in bacteria 23 15 Op 2 . - CDS 24784 - 25533 616 ## COG1085 Galactose-1-phosphate uridylyltransferase - Prom 25572 - 25631 9.4 - Term 25603 - 25636 5.1 24 16 Tu 1 . - CDS 25644 - 27194 2082 ## COG0519 GMP synthase, PP-ATPase domain/subunit - Prom 27335 - 27394 7.8 + Prom 27319 - 27378 6.9 25 17 Op 1 . + CDS 27510 - 27842 306 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 26 17 Op 2 7/0.000 + CDS 27814 - 28110 306 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 27 17 Op 3 . + CDS 28113 - 29396 408 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 29416 - 29448 2.5 + Prom 29398 - 29457 5.5 28 18 Tu 1 . + CDS 29503 - 30927 1678 ## COG4690 Dipeptidase - Term 30932 - 30979 10.3 29 19 Tu 1 . - CDS 30994 - 32259 1589 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 32289 - 32348 5.3 - Term 32308 - 32361 7.1 30 20 Op 1 5/0.000 - CDS 32380 - 33999 2043 ## COG0504 CTP synthase (UTP-ammonia lyase) - Prom 34019 - 34078 4.8 - Term 34032 - 34059 0.5 31 20 Op 2 . - CDS 34142 - 34690 821 ## COG3343 DNA-directed RNA polymerase, delta subunit 32 20 Op 3 . - CDS 34738 - 35145 262 ## lhv_0245 hypothetical protein - Prom 35205 - 35264 8.2 33 21 Tu 1 . + CDS 35261 - 36637 1400 ## COG1078 HD superfamily phosphohydrolases + Term 36767 - 36818 1.8 - Term 36632 - 36659 -0.8 34 22 Tu 1 . - CDS 36665 - 37630 1129 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 37652 - 37711 4.1 - Term 37665 - 37712 3.6 35 23 Op 1 . - CDS 37713 - 39050 1523 ## COG2851 H+/citrate symporter 36 23 Op 2 . - CDS 39066 - 40451 1658 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) 37 23 Op 3 . - CDS 40496 - 41323 999 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 41355 - 41414 5.6 - Term 41368 - 41423 12.5 38 24 Op 1 2/0.000 - CDS 41448 - 41681 171 ## COG4466 Uncharacterized protein conserved in bacteria 39 24 Op 2 7/0.000 - CDS 41751 - 42632 906 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 40 24 Op 3 3/0.000 - CDS 42622 - 43185 565 ## COG1658 Small primase-like proteins (Toprim domain) 41 24 Op 4 8/0.000 - CDS 43172 - 43942 683 ## COG0084 Mg-dependent DNase 42 24 Op 5 . - CDS 43942 - 45930 2411 ## COG0143 Methionyl-tRNA synthetase - Prom 45953 - 46012 3.5 - Term 45968 - 46005 1.3 43 25 Tu 1 . - CDS 46021 - 48705 2542 ## COG0474 Cation transport ATPase - Prom 48770 - 48829 2.5 - Term 48762 - 48805 1.5 44 26 Op 1 . - CDS 48995 - 49531 359 ## lhv_0227 hypothetical protein 45 26 Op 2 . - CDS 49521 - 50003 527 ## COG2131 Deoxycytidylate deaminase 46 26 Op 3 . - CDS 50017 - 51039 1262 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 51172 - 51231 77.8 + TRNA 51153 - 51223 60.2 # Gly CCC 0 0 - Term 51219 - 51252 3.1 47 27 Tu 1 . - CDS 51258 - 51854 497 ## LCRIS_00210 abortive infection protein - Prom 51927 - 51986 5.4 48 28 Op 1 . - CDS 51995 - 52366 338 ## Ldb0294 hypothetical protein 49 28 Op 2 . - CDS 52344 - 53654 1166 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 53684 - 53743 7.7 - Term 53724 - 53756 -0.9 50 29 Op 1 . - CDS 53757 - 54218 527 ## COG0782 Transcription elongation factor 51 29 Op 2 . - CDS 54218 - 54790 571 ## gi|260661471|ref|ZP_05862384.1| predicted protein - Prom 54849 - 54908 5.5 Predicted protein(s) >gi|260196040|gb|ACQN01000027.1| GENE 1 5 - 1132 1224 375 aa, chain - ## HITS:1 COG:L0103 KEGG:ns NR:ns ## COG: L0103 COG0787 # Protein_GI_number: 15672826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Lactococcus lactis # 1 373 1 366 367 330 47.0 3e-90 MVPAIHRPAEVEVDLLAIKKNLQAEKAHLKPGQKLFAVVKANAYGHGAVKVAKMAARNGA DGFCVAVLDEAFELRDASIVDPILVLGVTPANEACIAAAHNISLTAPSLEWLKAADMALA KKDMVLKIHLAIDSGMGRIGFSEDQEFIAANEFLRNSTHFIVEGMFTHFASADSADSSYF DYQVKRFNHLKNLLSIKPKWIHVANTASSIFDKQIHSDIVRFGIGLYGLNPSSNPASPDL ESKITLKPALSLVSELSFVKKVHSGYGIGYGSTYVADSDQWIGTVPVGYADGIIRKLSGF KIKVGDNFCPIVGRICMDQLMVLLPEKMPVGTKVVIYSNKTEDPNSIKKAADYVDTIHYE LACLLSDRLPRIYHE >gi|260196040|gb|ACQN01000027.1| GENE 2 1045 - 1482 83 145 aa, chain - ## HITS:1 COG:SP1699 KEGG:ns NR:ns ## COG: SP1699 COG0736 # Protein_GI_number: 15901533 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Streptococcus pneumoniae TIGR4 # 6 102 6 103 120 95 48.0 2e-20 MFHSIGSDITHLSRFEKMAKRDLFAKKVLTPKEFQIYQALKGRRQLEFLAGRFSVKESFS KAWGTGLGEVGFQDVETLNAPNGRPITTSTLYDGRILVTISHDLDTCITFVELEDYKWYQ QFIGQLKSKLTYLRLKRIYKRKKHI >gi|260196040|gb|ACQN01000027.1| GENE 3 1553 - 3007 1717 484 aa, chain - ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 438 3 440 516 569 65.0 1e-162 MKFTELGLNDALLKAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLPIL QKINNKEHFIQALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALKQTP AILVGTPGRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAQNREHTLLF SATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRLIDVQAPD LAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILVATDVAA RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEIGYMRTIENLTKK KMSPLRPPTNDQALQGQLAIAHKQIEDLLKADLTKYTEEASELLDNYSAVDLVAAFLKNL SKDADEIKVKITPEKPLPYKGNGRRRGHRNNFKHGGDRNERRHRKSNVRRGKHDFVIKNK KDHK >gi|260196040|gb|ACQN01000027.1| GENE 4 3018 - 4385 1612 455 aa, chain - ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 453 463 348 41.0 1e-95 MKMQLAEIAKALDTTIEGNSDPVISSVAFDSRKINENALFVPLKGERDGHDFINSAIANG AVATLWEKGHPNKPDNFPVVEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMV AAVLSKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKPDV CVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLLRQRAEKISQAKSTF GFNDQDTIYALEFKSYMHHASFVTSSSEQKFSIPMIGKHNVSNAMAAICVGHHFGETDDE IAASLSNFTPTANRMQWRKGDVGEDIMDDIYNSNPTAAKAVLTSFGQVEVPEGGRRIAVL GDMLELGSASAALHASLAEKLDPLVINEVYLYGPEMKNLEEAIKDKYAPASLHYYPQDKM ERMIDDLKNDIHSNDIVMLKASHGMHLDKVLERLL >gi|260196040|gb|ACQN01000027.1| GENE 5 4483 - 4740 442 85 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525693|ref|ZP_03955742.1| 50S ribosomal protein L31 type B [Lactobacillus jensenii JV-V16] # 1 85 1 85 85 174 100 7e-43 MKQGIHPDYQQVVFMDSATGAKFLAGSTLNPSETIEFEGKTYPLVRVEISSDSHPFYTGK QKFAQADGRIEKFNKKYGLSSKENK >gi|260196040|gb|ACQN01000027.1| GENE 6 4867 - 7077 3003 736 aa, chain - ## HITS:1 COG:no KEGG:LVIS_0239 NR:ns ## KEGG: LVIS_0239 # Name: not_defined # Def: periplasmic protease # Organism: L.brevis # Pathway: not_defined # 488 735 97 343 344 297 60.0 1e-78 MNLKKMATCAAVLASFALFTQSEKVMAATNNVAETGVLTVKYNGLGGVTLLDSDGNYQAQ VLGKNTTWRYFEKATINGRTMYRLGSDKQWIPAEFTSLNGQSSSQSTTTSTQVESKPQAP QTSQTSQTVSAPSDEKATSGVLYVVYKGLGNVALLDGQGNYQNQYVANGTGWRYFAEATI NGRKMYRLGSQKQWIPAEFTNLNGKSASENKPAAVNKPQTSQTSTAPSDEKSVSGVLHVV YKGLGGVALLDSQGNYQKQYLTNGTGWRYFAKATINGRTMYRLGSQKQWIPAEFTDVKDV EVTKTESNSSSKASDAKPSEASSSQKTDSKQTESSSKETTTSALTEFTSANGILDVNYSG LGGVALLDSQGNYQSQHVANGTGWRYNAKGKINGRLMYRIGSDKQWIPAEFVTIDKDADL PNYSRTTGILYVNYQGLGGVNLLDSQGNYQNQYVTNGSSWRYFAKATINGREMYKLGGDK QWIPAEFTAGFQNKSGYYQVQYNQIQPSIYAPGYNLGYNYEGVKTWLVMRRLGTYAGYAN YNWATVNAVKNFQASHGLNPTGIVDLATWLKLGFIKETWYGIDSYVAPLGAGKNASREDH INAMINQAYKYLGKPYIVGASSSPDYGVDCSGLVLQALYAGGLNPTSISSTQHAHPGNEW NSRVLWADPKLMTVPLSDIQRGDLVFYYEPGTRTIWHVALYIGNGQVIESWPPRVGISTL RDYNRSIIAGVKRPFI >gi|260196040|gb|ACQN01000027.1| GENE 7 7194 - 7709 416 171 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852002|ref|ZP_05557389.1| ## NR: gi|256852002|ref|ZP_05557389.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 171 1 171 171 309 100.0 5e-83 MDNGIIKMNKVSYPEFSELMTYYRTLSGSKFINNQRKVLLKSLQLAKKGDYQHALADLRT EAERLTKYWLKQKKIKPDLNFNQNINLLRHSGVSRENINTLYEIKAAGNKAVHELNANEE VAKKCFYDYFKVLKTYQRQIKPQQNFFIEKIFLILLIVIFGLFLLKLGQPN >gi|260196040|gb|ACQN01000027.1| GENE 8 7681 - 8130 473 149 aa, chain - ## HITS:1 COG:SP0740 KEGG:ns NR:ns ## COG: SP0740 COG0494 # Protein_GI_number: 15900635 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 146 1 148 151 144 50.0 8e-35 MDRSERVILTNMCMVYDGSKILVENRVKKDWPGITFPGGHVERGESIIASTIREIKEETG LDIQNLEMCGIKQFFDDDIRTIVFLYKTNQFSGVLRSSREGKVFWIERQDLKKYQLADGF ASMLEIFENDKLSENHWYLENGQWNYKNE >gi|260196040|gb|ACQN01000027.1| GENE 9 8204 - 9439 1185 411 aa, chain - ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 408 1 394 399 191 30.0 2e-48 MKKIWLVTKETFIRQTKGITFILSVLAPVIFMGIIFAVIFATQKLSGSDNKIDNAIVISK NYAPAVKDLSNFEVKSESAAKKALADEDIKGYVKVNVSSSGQITASWLGKEAMDSNDKSS LMESLQKLQQNLNVQAAGLTTKQLKTLSQSVKISEKISGHNGSEKKATRADLTAKSAKSI AANVFIWITYFILLTYISTMAQEIATEKGSKIMEIIFSSMRGGDYFVGKVLGVLGVFLVH VLAYVALLGLAIIVGPKIEMFAGFFKSNHELISQVVSNLISWNLVLLLLSVILSIVLAAF CGALANRVEDLQKILAPIIYIVIIALIAAPSLSKGDSIFAQVVSCLPLLSGFILPGRVAE RVAGTPELVIATIVSILTLALAIYFVRKAYPKLILQTDDGNILKKIKRLKG >gi|260196040|gb|ACQN01000027.1| GENE 10 9436 - 10341 255 301 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 7 295 9 301 309 102 26 4e-21 MVQQTHLVIDNVKKSYRTKEVLKGISFDCKPGQITGLIGKNGSGKTTLFHSILHFLNYEG KITLNGKNFSNEDYNIVGYLPEERSLMPKLTVLEQVRYLASLKGMSNNDIKVALPKWMDK LQVVGKMSDKIKSLSKGNQQKVQMIATMIHQPQILILDEPFSGLDPVNVDLMKEIILEQA KRGATVIFSDHNMDNVERLCDKVVMLNQGQLVLNGTIQEIRDSYPKEYLYIKKAGLNKEQ VASLPGCESYMQRHDGIWSIKLVDEKYGSEIFKLLTQGEYIPTFSQEAPTLDQIFKMEAT K >gi|260196040|gb|ACQN01000027.1| GENE 11 10537 - 10665 97 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIDAKKIPNKKPSITAEDACDVRINGKGKSISELISDSKKKK >gi|260196040|gb|ACQN01000027.1| GENE 12 10801 - 11910 1137 369 aa, chain + ## HITS:1 COG:no KEGG:LAF_1481 NR:ns ## KEGG: LAF_1481 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 5 369 4 367 367 418 56.0 1e-115 MKKGIKYTFRVILAILGIIFITLIGYAIYMQANYYRIPDHQIIHIKNNQSSVLSTGKTYT VTTYNVGFGAYNPKYSFFMDTGEMKNGTKTRGKYGTAVSKASELADTKGAIATIKKQNPD FAFFQEIDTNSTRSFGVNQVKMAESTFNNMGSSFAQNFHSAYIALPLNNPHGFARSGILA LSKYHITSSERRQYFVSSNLIEKFVDLDRCFNVMRLPVKNGKELVLINSHMSAYDKGGLS KKKQLALLNQVMKAEIKKGNYVICGGDFNHAFGAKYVAHFKSQQKQHDWLAVLSQKDLAS SGMKMVTAKNADEVPTCRGSDIPYKKGVTYTTIVDGFLVSPNVKAVSYNIDTQFAYSDHN PVKLSFSLK >gi|260196040|gb|ACQN01000027.1| GENE 13 12046 - 14358 3003 770 aa, chain - ## HITS:1 COG:no KEGG:LJ0913 NR:ns ## KEGG: LJ0913 # Name: not_defined # Def: levansucrase precursor # Organism: L.johnsonii # Pathway: Starch and sucrose metabolism [PATH:ljo00500]; Metabolic pathways [PATH:ljo01100]; Two-component system [PATH:ljo02020] # 17 675 25 700 797 672 57.0 0 MVKKMKKAALGLATFAATTVLSVSMNNSVVKAADKANDNNDKNTTSNTTVDNTAAVQDNV EKAQSAVANAETAEEAASAQKVLAQSKIALTTMAALDKSAAASTSSVTSSTQTSDKDSDT AKTNSDSTKSASGDTNNGEFAPATREITAGDKSTYDADGLKPEAAAAVKAAGIDPKTLSD YQKEALNKVDYTRKNAAGNAQMTYSDFKKIADALISKDGRYAIPYFNAKEIQNMPAAYTI DAQTGKLEHLDVWDSWPVQDVKTGYVANWNGYQLVVAMMGVPEANDNHIYLLYNKYGDNN LANWKNAGPIFGYNASPLLQQWSGSAVVNTDGSIQLFYTQVDGSQGTNHQKLASVTLLLS DNNGEVKIEKLANDHVVFEGDGYHYQTYKQWIETNKGADNIAMRDAHVIEGEDGHRYLVF EASTGTEGYQGLDQIYNWSNYGGDDAFNIKSLLDVLENRDIKSRASWANAAIGILRLTDD ETNPQVAEVYSPLLTATMVSDEIERPDVVKLNGKYYLFAATRLNRGSNDHAWMAANDAVG DNVAMVGYVSDSLNGKYVPLNESGVVLTASVPANWRTATYSYYAVPVEGHSNWLLITSYI TNRSHVAGDEYESTWAPSFILQVNDDNTTTILAKMTNQGDWIWDDGSENPAMMGTEETAA LPGERDKVVNWDEIGYKSNYDVPSVPEYPEIPSTPKSKYGMPGDPLFQDDTPETPKTPET PRRVDRYNNPTPTKSSLLPQTGNVVTNILSALGMLLASAGMALGFKRKND >gi|260196040|gb|ACQN01000027.1| GENE 14 15126 - 16886 1078 586 aa, chain + ## HITS:1 COG:no KEGG:LCABL_28670 NR:ns ## KEGG: LCABL_28670 # Name: ykcF # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 566 72 648 651 464 44.0 1e-129 MIIIQLAVLKFLPVSIYHDPYRVLSQADQLAAGNFHWTTTYFWRYPNNVPITYFLYLWLN LTKTLFSTNLALWILSFLILNSFILLTLKLAWQLSKRKSLIIGLTAFFVLTPFSYTYYLQ VFYTDLPNFLLLLLIFDYLFKWDSFNKSQQVITSISIFLLACIAYLLKPNIIILIPAILI LWLLLLIKKQLKKQLLIPSTIIILGLTLGLTATNGIYQLSNFKENKSFEFPKTSWIAMGL NEKYRGTYASEDVTKEVKLKNEAQRQTYDKALIAARIKKLGFSGLIKLWIQKLAILLNVG DIQNWYNGGYRNAPGWYQKHAQFFAKVSIITYSASCISIFAAVIARLFRYKLNLKKYKDQ ILLLSILTILGYLAFHTLLWESEPRYGQVILPMLFILLTLPIKKKHHQSKQVGIIALCLA IITPIFFSYYYAKTNKNDQIIAAQRSQLSVQYHAKSSTIQSLLKQRVRLNAEANYFSVQI HKQTELKVYLKNLSTNSYYALKHKDDIFYLNRKIKAGNYEIIAVNPAPTKQAVNIIKTYN YYLAPYPLYIDGKKDFHSSFIYTFVYDYKNGNYDWLKLNKEKRFGK >gi|260196040|gb|ACQN01000027.1| GENE 15 16925 - 17881 1368 318 aa, chain + ## HITS:1 COG:Cgl1931 KEGG:ns NR:ns ## COG: Cgl1931 COG1957 # Protein_GI_number: 19553181 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Corynebacterium glutamicum # 2 296 3 299 316 280 51.0 2e-75 MKKVILSLDTGIDDAMALAYTIAKDELDLIGVVGTYGNVYTEQGAKNALALLEMLGKTDI PVYLGNDHAIDQDHFDRMEVSADIHGENGIGQVIIPAATRQVETTSGIDFIIESTQKYGK DLLVIATGPMTDLALVLQKYPAFKDEIGQVVIMGGALTVRGNVSPYAEANINQDPLAAKI LFESGTPVIMIGLDVTMKTPIGLTDTQKWRDTQTFVGEKYADIVDYYIHIYDKYSPYLHG GSLHDPAAVCAAIHPEWFTFLPMHLTCETEGPSRGRTIGRLEDLRKEKPNVKVAIDIEAD KVSHDICSSLENWFKESK >gi|260196040|gb|ACQN01000027.1| GENE 16 17988 - 18815 574 275 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|297205136|ref|ZP_06922532.1| ## NR: gi|297205136|ref|ZP_06922532.1| possible surface exclusion protein PrgA [Lactobacillus jensenii JV-V16] # 1 275 570 844 844 337 99.0 5e-91 MNKAQQAVNDKANTIKNIQSSLAQYIEQENNIKNTIEKLQSNIKSKEEIITNLENQLAEA SADNKQKLADLQTAKSNLDEVNNELISLNTDLKQKQTNNDIAKKTLEEKTSILNEAKQKL ELDTADLLSYQQAPENLKKAQDNLAQVQDELEKANKVYEESINLLTISANNDELAQNKLA EAKKELASAKAALSALKALLEPQKIENNSAEFINKQQMPEQVISKIKNRTMMPEKTRVES NKTLPQTGNDSWILTSLGVLLSLWGVMVNFKQRKI >gi|260196040|gb|ACQN01000027.1| GENE 17 18969 - 20522 1759 517 aa, chain - ## HITS:1 COG:no KEGG:Tery_2946 NR:ns ## KEGG: Tery_2946 # Name: not_defined # Def: FkbM family methyltransferase # Organism: T.erythraeum # Pathway: not_defined # 39 310 494 774 786 74 22.0 1e-11 MGGKAMNNKFKDTVVGTAALLATTTIALTTNSHQVKADNKENTKQINNNSTSSLESTEQR VTKAESNVNDAQLEANSASRNKVLAEQKKDQAFDTLKKAKENQTKAENLVKEAQNKVNNK EIGEKQAQKAVDEDKVAIDQAQSQVDEAKKTADLALDSLNEAQSKVTNQEQKVKDAQVKV DNTQKIVDNTNVGKIQTDLDQANKNLTQAQSSLDEENNKLIKTRVAIDNSNEQLKQGKAE LTQKQAQLDQANEQLKNSQEMANKANEDLTANENSLNQLKQKIATLKSTEENQDKLIYGT DFINLVKKYKEENRDNWGFWSSYPDLAEVAKKYYEANFQGYKPTKADENTYYTINNGLID KEAIKQMSLYAASLLNPLRISLGEKPILVSDASIEVELATIKAYNDANQGFGHLENIIQD KIPKEFGFWTEGESIAMTTNSSDLKGTRVSLADLKMGIRQAIAMWVFDDNDQGYGHMTDV LSLRIYKSEDAAISIDKFGIFHFNDIVEPSEDGEFAQ >gi|260196040|gb|ACQN01000027.1| GENE 18 20656 - 21066 442 136 aa, chain - ## HITS:1 COG:no KEGG:LJ1575 NR:ns ## KEGG: LJ1575 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 4 130 10 138 145 101 44.0 1e-20 MLGIINKIQLSIGDLSDGIGVSQRQLRYWEEKGYIKPIADNEKGVRRYSFFMVGRCAQIK EFLDEGYTLTKAYEKTIEDEQKKKVFRDFIFNQGGNFTINVTDKEHSYGEIDLGAKCEGK ELFGVVDKNGVRYELR >gi|260196040|gb|ACQN01000027.1| GENE 19 21257 - 22732 2003 491 aa, chain + ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 5 474 11 480 493 444 54.0 1e-124 MISTDINGNKYNRTLLMTVLITGSFVTILTATLLATAYPSMMKSFNIDASTVQWLTTGFT LVNGIMIPVSAYLINKLSTKLMYISALIVYLIGTILAYWSPNFQVLLAGRLIQAVGAGVS MPMMQSIILMIYPPEKRGAAMGTMGLAIGMAPAIGPTLSGYIVDHFTWRDLFGMIIPIIS IVIIAAFFLMKDVLPNTNPKLDFWSVITSIAGFGIMLYGFAEVGSKGWGDTSVIASLIIG AVIVAIFAIRQFKLDEPFLNLNVFKTGQYTLGTLISSLSYMGMLAAEMILPLYIQNVLGK TALQSGLILLPGAIAMGVMSPITGRLFDKYGAKQIVITGTILLIFGSSAFLFIGPNTPTI YITVFYAVRMFGIAMMMMTVTTAGMNALPLDLMTHGTAVNNTVRQVAGSIGTAILTSVLT NVASSNTPAKSLLSQNPLAYKDQAINAVVLGYKSAFIVAIIFAILILFAAVFLQKGNSAR SEEITDGKEAK >gi|260196040|gb|ACQN01000027.1| GENE 20 22732 - 23277 541 181 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0724 NR:ns ## KEGG: LGAS_0724 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 13 179 13 180 186 96 35.0 3e-19 MAILFLIIGLVIYFIFNVIPITKFHYLIAYLGLALALVSGIGIMANENVHFGMSEKTTTK VQTIKPTTSVGQVNLLVYKQVGSQGPKIYVYNSQKQHTQANIKTSSSVKTGYQAAKLVTK ETRYEFKNKFYKLLFGFLGKENELKKRTNIFEIPSSWKVLSTKEVANLKKQMIAQAQAQN K >gi|260196040|gb|ACQN01000027.1| GENE 21 23324 - 23785 329 153 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851988|ref|ZP_05557375.1| ## NR: gi|256851988|ref|ZP_05557375.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 153 1 153 153 267 100.0 2e-70 MKKDIETLLNKLKINYRLIEHVPVWKMEDALDLALDCELLKSLVFKDEKNQTFFLLVCKA EERVNISALAKLVRTSRSKLNFASKEDLIALKTKAGLVSPLDFSNKYSIIISEEVKSLGN VGIHAGSNIETLILDVEDLVKCLVKQQRNLIWM >gi|260196040|gb|ACQN01000027.1| GENE 22 24109 - 24717 526 202 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 12 200 7 194 194 154 42.0 7e-38 MIKLNKTSLASLVAIVLAIALANTAVLDQAKTKEVNSSSLKVTKHKEKKTKEIKIDWQKP SENKPYPNVTDYPKMWIKVSKAKQRTYLMNGSKVLYTMYCSTGSGGDRATPEGTFYIQAE RGDFFYNQGSGEGAKYWVSWKDHGIYLFHTVPTDSQGHYVESEAEKLGKKANSHGCIRLS VSDAKWFYENIKEGTKVVITNS >gi|260196040|gb|ACQN01000027.1| GENE 23 24784 - 25533 616 249 aa, chain - ## HITS:1 COG:L51063 KEGG:ns NR:ns ## COG: L51063 COG1085 # Protein_GI_number: 15672818 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Lactococcus lactis # 3 247 8 255 261 254 48.0 1e-67 MTPLVFNTQIAKGKPSNSDCCPFCDIENLTGIIEKQNQFIWLENKYQTLQDTYLTLIIES NEHLGDIASYSYEYNRSLIRYAVDKWLKLSASKQYRSVAMFKNLGPLSGGSLSHPHLQIV GFKKADIYSEVYPENFIGLSIKKDQNFEVNMSLQPIMGYTEFNVIISNMDKLDLFADNIK DLVSFCMSEAFYRGRCKSYNLFFYYIDEKIICKLVPRFVTPPYYVGYRQSQRNSEANLER IKADFLNYS >gi|260196040|gb|ACQN01000027.1| GENE 24 25644 - 27194 2082 516 aa, chain - ## HITS:1 COG:lin1081_2 KEGG:ns NR:ns ## COG: lin1081_2 COG0519 # Protein_GI_number: 16800150 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Listeria innocua # 202 516 1 315 315 495 74.0 1e-140 MSVKNLTDFDKIIVLDFGSQYNQLITRRLRDFGIYSELLPNDLSIEKIKEMNPKGIIFSG GPNSVYDEGSLKVDPAIFELGIPILGICYGMQLMAHDLGGKVEKADHSEYGRADINVADA TKLFDKLPAKQTVWMSHGDLVTSVPDGFETLASSPNCPISAMANVAKKFYGIQFHAEVRN SEYGLDILKNFAFGVCGARNNWTMDDFIDLEVERIRKQVGDGKVILGLSGGVDSSVTATL LHKAIGNQLTAIFVDHGLLRKDEAKQVMEALNRDLGVNIIKVDAQKRFLDKLKGVTEPEQ KRKIIGKEFIEVFNEEAKKLDGVKFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPKDLG FELVEPLRKLFKDEVRELGEKLGIPHELVWRQPFPGPGLGIRVIGEITEEKLEIVRETDA ILREEIKNAGLEEEVWQYFTVLPGIRSVGVMGDGRTYDYTIGIRAVSSIDGMTADFSKLP WDVLQKVSTRMVDEVDHVNRVVYDITSKPPATIEWE >gi|260196040|gb|ACQN01000027.1| GENE 25 27510 - 27842 306 110 aa, chain + ## HITS:1 COG:lin1998 KEGG:ns NR:ns ## COG: lin1998 COG0503 # Protein_GI_number: 16801064 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 8 109 1 102 192 121 58.0 4e-28 MQQRGVLVKLLEERIKKDGQVLEGDVLKINSFLNHQVDPKLMMEIGQEFARLFKDSDITK VLTCEASGIAPSIMAAYTLNVPMVFARKKKPSTLNDAVYLADVFSYTKKS >gi|260196040|gb|ACQN01000027.1| GENE 26 27814 - 28110 306 98 aa, chain + ## HITS:1 COG:BS_xpt KEGG:ns NR:ns ## COG: BS_xpt COG0503 # Protein_GI_number: 16079265 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Bacillus subtilis # 7 97 101 191 194 87 51.0 5e-18 MCFPTLKKVNNKICVEKKFLSSTDKVLILDDFVAHGEAVKGMVSIVQQAGAKIVGVGAVV AKDFQGGSDWIKKQGLRFEALANIASFEGGEVHFVGEE >gi|260196040|gb|ACQN01000027.1| GENE 27 28113 - 29396 408 427 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 8 417 15 417 447 161 28 7e-39 MKEVSHKKAAVLGLQHLLAMYSGAVAVPLLIGTALKFNSTQMTYLVSIDIFMCGLATLLQ LFRNRYLGIGLPVVLGCAIQAVAPLQMIGQKFTINTMYGAIIVAGIFVFCIAGWFSKIKK LFPPVVTGSLITVIGLTLIPVAFQNMGGGTATAKDFGDSKHLITAFATILVIILVELLAK GFLKSIAVLIGLIVGTVLASFMGMVSLTPVLQASWFHLPQFFYFGKPEFEWSSCVTMIII ALVSMVESTGVFFATSDLLKKEVNEDDLKRGYRAEGLAQIFGGIFNTFPYTTFSQNVGLL QLSGIKTRRPIFWAAGLLMGLGLLPKIGAIVTIIPTSVLGGAMLVMFTMIAVQGIKMLLK VDLGDNRNILVIALSIGLGVGVTSYPGIFQHLPQTVQLFLGNGIVVASLSATLLNLIFKG KDGLNSK >gi|260196040|gb|ACQN01000027.1| GENE 28 29503 - 30927 1678 474 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 474 6 474 474 551 57.0 1e-156 MKEQTECTTILVGKKASIDGSTMIARSEDGGRTIIPESFKVVNPEQQPKHYQSVISKQVI DDEDLALTPLRYTSAPDASGKNGIWAAAGINAENIAMTATETITTNSRIQGIDPLLTTEE GGLGEEDFVTLTLPYIHSARDGVKRVGYLLEKYGTYEMNGMAFSDKDEIWYLETIGGHHW AARRIPDDAYVIAPNRLNIDEFKFDNPDFVCSSDLKDLIESYNLNPDFEGYNLRHIFGSS TIKDAHYNNPRAWYIHNFFNPEFGGKPSDQDQPFICHANRKISLEDIKWAESSHYQDTPY DAYGDQGTTEQKKTFRPIGINRNFETHVLQIRNNVPAEIAGVQWLAFGPNTFNTFVPFYT NITTTPASWQTTAKFDLTKIFWLNKLAAQLGDTNYRVYGELEADFEQKSLAACHKIQHDT DLAVKGLTGKDLQTKLEAANDKMAEVVYNNTVELLGQMVDEGHGLMTLKYDLLD >gi|260196040|gb|ACQN01000027.1| GENE 29 30994 - 32259 1589 421 aa, chain - ## HITS:1 COG:SP1081 KEGG:ns NR:ns ## COG: SP1081 COG0766 # Protein_GI_number: 15900950 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Streptococcus pneumoniae TIGR4 # 1 418 1 416 419 416 55.0 1e-116 MKQMIIHGGKPLTGEVWIGGAKNSTVALIPAAILSHTPVTLECVPRIADVDNLMDLLKEM DVKCDFKETTLFIDPTEIKMSPLPAGKIKSLRASYYFMGALLGRFGKAVVGFPGGDDIGP RPIDQHIKGFEALGAIVKNENDQIIIKAPEEGLHGNQINLAMPSVGATMNIIMASVTAQG QTVINNAAKEPEIIDLATFLNNMGAVIRGAGTETIRIDGVRRIEAKIPHTIIPDRIEAGT YISLAACIGNGIRIHNIIEEHLDSYLAKVEEMGVVIDADEDSLYVYPAGDLKMIQVRTDP YPGFATDLQQPITPLLLTAKTGEGVVIDNIYPKRTRHIPELQKMGANIKVEDNIILVHPT NELHGTRVHADEIRAGASLMIAGLMADGETVIDNADNILRGYDRVEEKLRKLGADVTIQD A >gi|260196040|gb|ACQN01000027.1| GENE 30 32380 - 33999 2043 539 aa, chain - ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 531 3 530 535 771 69.0 0 MTKYVFVTGGVVSSLGKGIVASSLGRLLKNRGLKVTMQKFDPYINIDPGTMNPYQHGEVF VTDDGTEADLDLGHYERFVDVRTSKYSNVTTGKIYSEVLKKERRGDYQGATVQVIPHITN MIKEKIMRAGQTTDSDVVISEIGGTVGDIESTPFMEAIRQMKREVGADNVMYIHVTLVPY LHAAHEMKTKPTQHSVATLRSIGIQPNMLVLRAEKEVGQELKNKIANFTDVPVEAIMESI DAPSLFDIPLNFQKQGMDQLVCDHFKLTSPKSEADMEEWVKLEKRSTSLKYKTKITLVGK YVELEDAYISVTEALKHAGYLYNSEIEINKVQAEDITEDNIADFMKDSDGLIVPGGFGLR GLEGMITAIKYARENDIPFLGICLGMQMATVEFARDVLGYKDANTTEADPETKNNIIDLM ADQEGQDTIGGTLRLGLYPARLKKGTKTYKAYDEQEVIQDRHRHRYEFNNKYREEFEKHG MIFSGVSPDNHLVEIVEIPDKKFFIAAQYHPEFLSRPHKPEGLFKAFIGAASGLEEDKF >gi|260196040|gb|ACQN01000027.1| GENE 31 34142 - 34690 821 182 aa, chain - ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 137 191 98 51.0 6e-21 MGLADFEGKKREELSLIEVARAILEDHGKRMAFADIVNAVQEYLGTSDEEIRERLPQFYT DMNTDGEFISMGDNVWALRSWFPYESVDEEVNHPEDEDDEPRKKHHRKVNAFIASSDDDD IIDYDSDDPEDDDLDTEDDDNADDFDATDDDDFDDADDDDELPDGIEGQLSELDDEDDED DE >gi|260196040|gb|ACQN01000027.1| GENE 32 34738 - 35145 262 135 aa, chain - ## HITS:1 COG:no KEGG:lhv_0245 NR:ns ## KEGG: lhv_0245 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 135 1 133 133 124 50.0 1e-27 MKEVDLKFKSTITQEQDSESFQKIAKAQVEELKDGWRLKYLEDNQIPVKILLKKQKQTLI INRGVVPSNYSLIKLELGEKRGCKYVVNNRQMDLISETKFLKVTKYGGRTKVQVEYDLFS GLYLIGNYAVTLIFS >gi|260196040|gb|ACQN01000027.1| GENE 33 35261 - 36637 1400 458 aa, chain + ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 14 440 6 426 434 473 55.0 1e-133 MFFQSKKLPHPVELRDPVHGYIHIEDKVILDLINSKEFQRLRRIKQLGPTSYVFPGANHT RFEHNLGVYELTRRICEIFSKQYPSTKPNDGLWNENENLVAECAALLHDIGHGPYSHTFE HLFGTNHEKIGTQIITDKSTEINQILSKVAPTFPEAVASVIAKTYPNPQVVKMISSQADA DRMDYLQRDAYFTGVTYGSFDIERLLRVIRPYSGGICFTNNGMHAVEDYIVSRYQMYQQV YFHRINRSLEVVLNKLLERAKYVYKNSNLLVTPSLQKFLDNNWTLKDYLNLDDGVMETNF SIWRESGDEILADLASRYLFRKPFASCSVDQETRNLVPKLKNYIKEAGFDPNYYTALTSA FDEPYDAYKPSGKNAHSQIEIMQDDGTLIELSELSPLVKALNGTIQGSENFFFPKVMLSQ NDEPQIFDPLYQEFQKYVKNGALRYQRKPTRKNNLNNQ >gi|260196040|gb|ACQN01000027.1| GENE 34 36665 - 37630 1129 321 aa, chain - ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 6 315 9 317 317 424 68.0 1e-119 MSYKDDIKLFALNSNTPLAQKIADRIGVPLAKSSVQRFSDGEIQINIDESVRGKDVYLIQ STSAPVNDNLMELLIMIDAVKRASARAINIVLPYYGYARQDRKTRAREPITAKLVANMLE AAGATRILSLDLHAPQIQGFFDIPVDNLMGAPLLADYFLSNHLEKGAVVVSPDHGGVTRA RKLAEFLKAPIAIVDKRRPKANVAEVMNIIGDVSGKRAIIIDDMIDTAGTITLAAQALID AGATEVYASATHAVLSGPAIDRLNNSKIKNLVLTDSINQPEEKKIDKLQLVSVGPLMGDA IKLIEQHQPVSPLFNTRYREN >gi|260196040|gb|ACQN01000027.1| GENE 35 37713 - 39050 1523 445 aa, chain - ## HITS:1 COG:BS_yxiQ KEGG:ns NR:ns ## COG: BS_yxiQ COG2851 # Protein_GI_number: 16080957 # Func_class: C Energy production and conversion # Function: H+/citrate symporter # Organism: Bacillus subtilis # 5 442 1 424 426 327 44.0 2e-89 MNTTLMAFLGLAMIVTFMALIMAKKLSAFTSLVIVPILFGVLAGYGFFDTLTYAMAGIKS VASTFAMMTFAILYFGIMLLTGLFDPMVDKVVKWVKGDPLKVLVGTAILSAFVSLDGDGT TTVMIVCTAMIPIFNRLKIKKIYLATLIILTNGVMNLIPWGGPTARVMTVMHLDANQILP PLLPGMIISIIYTIGVAYYLGKKERKRLGVQENVEHVVEHYESEDEEEGLKRPRLIWFNL ILTIALVVALVLGKADSAILFGFGVAIALAINYPKNKMQRPVISLLAPEMISVVIMVLGA GVLMGVLNGPVNAKGEYVSGMSHAIAVVLTQMIPSSLGKYFAIIIAFISAPGTYLLNNDA FYYGVLPPLAATAKAYGFSNLQIGFASLMGQAFHFLSPLVPFIYLLMDKTEITLGEYQSY IFRWCIGIFICFMAIGLILGYLPIL >gi|260196040|gb|ACQN01000027.1| GENE 36 39066 - 40451 1658 461 aa, chain - ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 2 448 3 449 457 500 58.0 1e-141 MKKFVVVLAAGKGTRMKSKLYKVLHKVCGKTMVEHVVEAANGMKPEKIVTIVGTGAEDVK EVLAGKSDFAFQEKQLGTGHAVLTAAPILENENGATLVVTGDTPLFTTETFENLFNYHQE KENAATVLTAEAPNPFGYGRIIRDEQGNVLRIVEQKDGKPEELKVKEINTGVFCFDNKKL FAALKKVTNDNAQGEYYLTDVLEILRNSGERVGAYKMPDFSQSLGVNDRIALANASKIMQ KRINEEHMRNGVTFIDPATAYIDSDVKIGNDTIIEGNVVIKGKTTIGSECVITSGSRIVD SEIGNNVTVTSSTIQEAIMHDNTDIGPNSHLRPKAEIMSGAHIGNFVEIKKATIGENTKV GHLTYIGDATLGKDINVGCGVIFSNYDGVKKFHSTIGDHAFIGAGSTIINPITVADHSFI AADSTITKDVNRYEMAIARGRQVNKEDYWHKLPLAQDKDWQ >gi|260196040|gb|ACQN01000027.1| GENE 37 40496 - 41323 999 275 aa, chain - ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 267 3 270 272 272 51.0 5e-73 MKRSERLVDMTKYLLARPHTLISLPFFAKRYGSAKSSISEDLSILKHTLAANEDGVLETV AGAAGGVRYIPFLGKKHSEAYLKELADRIEDTERILPGGFVYLSDVLGSPSDMQRIGEMV ATHYAYKNITAVMTIETKGIPLAEAVSRFLNVPFVTARKRGKVTEGATVSVNYLSSSSSR VAKMELPTKVLPKGSNVLIIDDFMKGGGTLTGMEGLVREFDSTVGGICVLCETTHADKMV DDYLSLVKIDEIDTEKRVIKTSLGNFLEKTDFNRF >gi|260196040|gb|ACQN01000027.1| GENE 38 41448 - 41681 171 77 aa, chain - ## HITS:1 COG:SA0452 KEGG:ns NR:ns ## COG: SA0452 COG4466 # Protein_GI_number: 15926171 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 77 1 77 87 95 57.0 2e-20 MPTSIVSIKKSLDSHVGENLTVVAQAGRKKVTKRKGILKSTFPAVFVVDLDQNQNSFERV SYSYTDLLTKNIELKFE >gi|260196040|gb|ACQN01000027.1| GENE 39 41751 - 42632 906 293 aa, chain - ## HITS:1 COG:SPy0262 KEGG:ns NR:ns ## COG: SPy0262 COG0030 # Protein_GI_number: 15674442 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Streptococcus pyogenes M1 GAS # 7 292 3 286 290 194 43.0 2e-49 MANNLPICDPVRTKAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIKSDDQVLEIGPG IGSLTEQMLLRGAKVLAYEIDQDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKED IGDFFDLNKPIKVVANLPYYITTPIIFALAKSDLAFESLTLMMQKEVAERLCASSGNKEY GPLTIFVQTQMAVKMAVMVDHTNFNPQPKVDSAVVVLKPLAKKVDVGDTENFEHVVKMCF SQRRKTLNNNLKSLVKNGEERKNLLQMLDLPEKARPEELTIGQFISLAKALKA >gi|260196040|gb|ACQN01000027.1| GENE 40 42622 - 43185 565 187 aa, chain - ## HITS:1 COG:SPy0261 KEGG:ns NR:ns ## COG: SPy0261 COG1658 # Protein_GI_number: 15674441 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Streptococcus pyogenes M1 GAS # 5 184 4 188 189 144 47.0 1e-34 MQLNKKNFDAVVVVEGKDDTARLKQFFPGIETIETNGSAVSTETLALIKKVAQKREIIVF TDPDFNGERIRKIVTCAVPTAKQAFITRKEAEPEFSGSLGVEHATKEALERALVELHEGA KTSDLTFDEYRSLGLATSLRSRKLREAVGIKLGIGYANGKQFYKRLVMFGIGFSELKQTV SEVENGK >gi|260196040|gb|ACQN01000027.1| GENE 41 43172 - 43942 683 256 aa, chain - ## HITS:1 COG:L87336 KEGG:ns NR:ns ## COG: L87336 COG0084 # Protein_GI_number: 15672669 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Lactococcus lactis # 1 256 1 256 257 239 46.0 3e-63 MEIFDAHTHLNDTPFRGKEAVYLQRAQDLHVTKMACVGQDLEYNKRALDLANKYDNVYAI VGYCPDVAKDYCQEWEDLLIQQLKQPKVVALGEIGLDYYWDESPRDVQKTVFQRQIEIAH DLKLPVNIHTRDAFKDCYEILSNSNLEYGAVLHSYNGGPKWTKKFLELDNVTFSFSGVAS FTKAQDVHASVKLVPLDRLVVETDAPYLTPKPYRGKQNEPAYVYYVAKAISELKEVSLEQ VAEATYRNTVTAYAIK >gi|260196040|gb|ACQN01000027.1| GENE 42 43942 - 45930 2411 662 aa, chain - ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 532 4 537 549 704 63.0 0 MADKKTFYITTPIYYPSGRLTIGNAYTTIAADSMARYKRSQGYETFFLTGTDEHGLKIEQ KAEKAGIKPQEYVDGMAKQYKELWKKLDISYDKFIRTSDPEHVKAVQAIFEKLLKQGDIY LGEYTGWYSVEDEEYFTESQLKEVFKDDNGKVIGGIAPSGHKVQLVKEPSYFFRMSKYAD RLLKYYQDHPEFILPHSREKEMVNNFIKPGLEDLSVTRTTIDWGIPVPSDPKHVVYVWID ALSNYITALGYGSDDDSLFKKFWPADVHLVGKEIVRFHTIYWPIMLMALDLPLPKQIFGH GWVLIYKDKMSKSKGNAVYPESIVDRFGLDALRYYLMRAIPFGSDGSFSPEDFVERVNFD LANDLGNLLNRTVSMINQYQAGLVSKPGSQDDLGNNLAKFADETIAEYQKQMDALHFSQA LDAIWKFVGRANKYIDETTPWVLNKEGKTEELARVMANLAESLRLIAIMISPIMTESPAQ IFEQLGLNFEEADQKALKFGEFAWNIKVTDKPAPIFPRRKKDEEVAYIKAEMAKAVSKKQ TRSEKKAKEMEAEKNYISIDDFDKVEIKVGQVLSVEAVEGSSKLLKFQMDFGDEKRQILS GMRKFYPDFEELVGKKILAVTNLKPRKMMGMESQGMLLSSEKGKKVKLAIVGEEHDLGAL LG >gi|260196040|gb|ACQN01000027.1| GENE 43 46021 - 48705 2542 894 aa, chain - ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 10 889 20 905 910 815 47.0 0 MIKIKKKTVSNATNRKLLQEVATEELTTTFERFKSSNKGLSTSQAEQMRAKYGKNEIAKD EHNTKAHFLFEAFMTPFTVVLLILATLSLFTNYIFVPASDKDLSTVIIMITMVLISGLTS FIQNVKTNDAVQSLLKMVSVTTNICRDGKDQELATSEVVPGDIINLAAGDMVPADMKLIK SKDLFCSSSSLNGESNPVEKIAGQKPTKNQLNEYIDYPNVVYEGTTIVSGSGTGIVFATG SQTVFGKLARQISQTKIKQTSFDTGIKDISKLLITMTAVIAPLVFVINGLTKGNWLDALI FAIATAVGLTPEMLPVIVTSNLVKGSVEMSKHGTIVKKMNSIQNFGSADILCTDKTGTLT QDKVVLERHYDLNMIEKPKVLELSYLNSFYQTGMKDLIDKAVIDAAENELNTKKIKQDYE KIDEIPFDFRRRRMSVVVQNQAGEHLLVTKGAAEEMLEASSFVEVNGQRLPLTKEQEDKV LANINDMNNDGLRVILLGYKKNPAPVGEFSVEDESELTIVGFLAFLDPPKETAKEALHHL KEDGITVKILTGDNAAVTRAVGKQVGLDISKIYSGNELEGKTDAELSKMVEESDIFVKLS PELKTKIIEILKKDGHTVGYMGDGINDAPAMKAADVSISVDTAVDIAKESADIILLHKDL RILENGVRIGRKIFGNTMKYIKITLSSNFGNILSILVASSFLPFLPMLPLQLLILDLLYG TSCLAIPFDKMDAEYLSQPRTWSTKKLPKFMFYFGPTSSVFDIITFALLYFVVCPSVAGG SFTSLNMAGQAVFIAVFHTGWFIESLWTQEMVIHALRDQRLPLIKQRATAPVMLATFGAA VIGSYLPYSRIATSLKFGPMPGTFIEMVFVLLVFYILLTTLVKRLYLRKEKFLI >gi|260196040|gb|ACQN01000027.1| GENE 44 48995 - 49531 359 178 aa, chain - ## HITS:1 COG:no KEGG:lhv_0227 NR:ns ## KEGG: lhv_0227 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 30 174 43 196 205 62 24.0 5e-09 MKIKHLILILLICFPIITAFKSDEMTIGQLVQNQNQLYKQKNIEAKIKIVNRRPVKVDSK EIYLLFEYGKKSNNVQLYIGKKWQKVITTSIKANLLTSQAELLKSTNKKQVTRGIKQLLR AIFTLIDQNQRITSQVDLSQNDLEKILKPRSLTLPVAIMFGLIFMGGAYLYQKFIFKR >gi|260196040|gb|ACQN01000027.1| GENE 45 49521 - 50003 527 160 aa, chain - ## HITS:1 COG:SPy1823 KEGG:ns NR:ns ## COG: SPy1823 COG2131 # Protein_GI_number: 15675651 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Streptococcus pyogenes M1 GAS # 4 140 3 139 153 188 62.0 4e-48 MSRNRIPWNQYFMMQALVISQRSTCNRALVGSVLVKDKRIIGTGYNGSVTGQEHCDDVGH QMVDGHCIRTIHSEMNTLIQCAKNGVSTLDTEIYVTHFPCYNCTKALIQAGIKKVNYFFD YHDNPLAVELLKKTGVEVNQIKLDSSYAQNLVEEIAENEN >gi|260196040|gb|ACQN01000027.1| GENE 46 50017 - 51039 1262 340 aa, chain - ## HITS:1 COG:L0358 KEGG:ns NR:ns ## COG: L0358 COG0180 # Protein_GI_number: 15672048 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Lactococcus lactis # 1 338 1 341 341 472 69.0 1e-133 MTKEVLLTGDRPTGRLHIGHYIGSLKNRVILQNEGKYNPYIMIADTQAMTDNARNPEKIR NSLIEVALDYLAVGIDPEKSTIFVQSQIPALFELTAYYLDLVTVARLERNPTVKTEIKQK NFNESIPAGFLTYPVSQAADITAFKATVIPVGDDQEPMMEQTREIVRTFNRLYNTDILKE PKGYFPPKGQGRLPGLDGNAKMSKSLGNAIYLADDAKTLTKKVMSMYTDPNHIHVEDPGQ VEGNTVFTYLDVFCSDKEKVQDLKEQYQKGGLGDVKIKRFLNEVLEAELAPIRERREKFA QDTDAVYEMLLEGSRKANEVANETLQEVRDAIGLNYFKNR >gi|260196040|gb|ACQN01000027.1| GENE 47 51258 - 51854 497 198 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00210 NR:ns ## KEGG: LCRIS_00210 # Name: not_defined # Def: abortive infection protein # Organism: L.crispatus # Pathway: not_defined # 2 198 24 220 220 169 51.0 6e-41 MVVGAKELCANSSPLHIWDLILFAIVTIMTLLLFVYRFKREQRYFERVNKVNLLDNIKVT LFLSFFVFFLRGLISYLQVIHYLNSYTFQLTYAKHESVSMFWFLILSQGLVLPFLQVFLA EGFMFNYLFRDNVGSVAIFGIVFSGLAFSFLNFQLNAPIFLLDMIFGVVFAWAYLYSQNI VMPLYLAILNGLLMVILI >gi|260196040|gb|ACQN01000027.1| GENE 48 51995 - 52366 338 123 aa, chain - ## HITS:1 COG:no KEGG:Ldb0294 NR:ns ## KEGG: Ldb0294 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 9 114 11 116 124 82 40.0 5e-15 MVDLVMSNDKLIYDFFKNYQDRGMKKWTGFLLSDHTAQIAKSQKSESNSLKSSLKLEEIK AILSTAILEGKIVQVQVKAVDLDGVPLPEIRGHVEAWDDNQVVINRQIINLSEINYLEIV KEL >gi|260196040|gb|ACQN01000027.1| GENE 49 52344 - 53654 1166 436 aa, chain - ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 3 431 6 426 426 333 41.0 4e-91 MYDYRYEPHRLIFMIDNKSFYASCECLRLGLNPMTTALAVLSRQPDSDEKSSLIMAASPL AKKKYGLTNVMRARDLPPKSQRKDLILVEPHMNLYIQKSMEVLNIFRKYAAEEDIHIYSI DESMIDMTRSWHLFGTDPYLVGRGIQKEIREKLGLYTTCGIGENPLLAKLAMDIEAKKRW SMIAFWHYIDVPDTIWQIKNLEDVWGINKSTAIRLKKLGINDMNELAHCNPEKLKSEFGI IGEQLFAMSWGVDRSIISQKYHPEHKSVGNSQVLMRDYLEQREIEIVIREIAEQVAARIR KRKLLTSHISLHMGFSKFKNKKRTGINASKKIIATNDNLVLTAELRGLFRKFWKGEAVRT ISIAYSDLLPDTEQQLDLFVDSTTQMKHKNCDYIIDSLREKYGLASLVKASSLLPGATSI KRANLVGGHNGGSSYE >gi|260196040|gb|ACQN01000027.1| GENE 50 53757 - 54218 527 153 aa, chain - ## HITS:1 COG:SMc01218 KEGG:ns NR:ns ## COG: SMc01218 COG0782 # Protein_GI_number: 15965326 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Sinorhizobium meliloti # 7 147 7 152 158 90 41.0 1e-18 MVYFQKMTPQGYKLIEEEIANLKKKRPIKIKALQEARSLGDLSENSEYTEAKKELRHLES RLRYLDKQLKYAEIITPNDDKKVDLGKKVKLRFEDDETSDTYEIVGRLEANLEAGKISFD SPLGAAIMKKEAGTCVTVEAPAGSYEVTIEDVL >gi|260196040|gb|ACQN01000027.1| GENE 51 54218 - 54790 571 190 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260661471|ref|ZP_05862384.1| ## NR: gi|260661471|ref|ZP_05862384.1| predicted protein [Lactobacillus jensenii 115-3-CHN] # 1 190 49 238 238 207 100.0 2e-52 MYKKIITSIALLLVFAGAITGCTQKKSTQSSAKQSQVVKKHHKKAKKSKKSKKTNSTNID ETESQSSSNSTISSNANVTNNQTTSNTNSQSKTNSQGSVNNNQTNSGKVVTNSNSTESLA SAAVNDWLKRGGYPASFTDNDLVAYISSASNETQISVAEKASGHIVANYVEKANGLYYYD VVNNRLVKVN Prediction of potential genes in microbial genomes Time: Wed May 25 14:06:51 2011 Seq name: gi|260196039|gb|ACQN01000028.1| Lactobacillus jensenii 115-3-CHN cont1.28, whole genome shotgun sequence Length of sequence - 5289 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 24 - 83 6.3 1 1 Tu 1 . + CDS 114 - 1430 1451 ## COG3579 Aminopeptidase C + Term 1431 - 1484 11.5 - Term 1703 - 1746 -0.3 2 2 Tu 1 . - CDS 1809 - 3500 1585 ## COG4716 Myosin-crossreactive antigen - Prom 3528 - 3587 6.4 - TRNA 3624 - 3696 65.9 # Thr GGT 0 0 - Term 3689 - 3721 4.9 3 3 Tu 1 . - CDS 3729 - 4991 610 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 5223 - 5282 7.6 Predicted protein(s) >gi|260196039|gb|ACQN01000028.1| GENE 1 114 - 1430 1451 438 aa, chain + ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 1 438 1 437 441 342 41.0 1e-93 MAHELTLQELEDFSREFNADHTSQVIARAAKRSGVLEASYNDAVSRRLTNVFSTELDTEN VTNQLQSGRCWLFATLNVLRHHFGKEYKAKNFTFSQAYNFFWDKVERANNFYNYVLETAN KPLDDREVKAYFDFAGHDGGQWHMAISLVEKYGVVPTYAMPETANTNNTSALAEALAQKE KKDALVLRKLVQAGDLEAAEKARKKFLSEVYRMTAIAVGEPPKKFDLEYRDDDKKYHLDK NLTPIEFYNKYFKGVNLDDYVVLTNAPDHEYNKLFALPSEDNVQGKYPIKLLNVPMEFLT SAAVAQLKDGEAVWFGNDVGKQKENKTGFLATNLYKLDELFGVDLTMSKKERLETGVGEV SHAMTLVGVDEDNGDVRQWKVENSWGEKVAKKGYYIMSQDWFEEYVYEVVVHKKYLTPEQ QKLAEGPAEKLPAWDSLA >gi|260196039|gb|ACQN01000028.1| GENE 2 1809 - 3500 1585 563 aa, chain - ## HITS:1 COG:lin0483 KEGG:ns NR:ns ## COG: lin0483 COG4716 # Protein_GI_number: 16799558 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Listeria innocua # 8 562 54 565 566 422 42.0 1e-117 MKNKAIMIGAGLANMAGAVYLIQEGKWSGKNITFYALDNHGSNDGSTANEASEEYWNQNH PMENTHGFIARGGRMLNYRTYVDLMDLLSRIPSVTEAGMTAEEDTRDFDSKHRTFDKARL LEGGIGIVDGHKLGLNNMDRLLLSRLVMMPDSEEEKLDNVTIAEYFKDDPHIFQTNFWYM WETTFAFRVQSSAQELRRYMHQMIYEFTQIEHLVGVNRTRYNQYESIMLPLIKYLQKQGC KFIMNRRITAFEFKDTPMQDEITVTALKMENTETDKEEKVEVDNQTTVFFTNGSITDSAT LGDYNTPAPENMDYGAASSLWKQACEHFYNLGNPDKFFNDRNASEWVSFTLTTKDHTLLN EITRITTQVPGNALNSFISTTPITPLGQKDVNMSIVVHHQPHFTTQKPNETVIWGYFLYP RRKGEFVDKEYIKMTGKEMLQELIGQLSKVDPGPHNIKDLEDKILASVINCIPCYMPYAS ALFNNRAKNDRPEIIPKHSTNLAFTGEFVEQPYQMIFTEESAVRSGEVAAFHFAGVPMSK LVLTPRYDKDPKTLMKATKRMFS >gi|260196039|gb|ACQN01000028.1| GENE 3 3729 - 4991 610 420 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 3 419 6 416 418 239 36 3e-63 MAKFDILEDLKWRGAINQQTDEEGLKKYLAEHDDLALYCGTDPTGDSLHIGHLIPFMILK RFQLAGYHPVIIIGGGTGSIGDPSGRKTERVLQSDEQVHHNEVALTNQMKKLFGTENFQI VNNRDWLGKMSLLEFLRDYGKLFQINNMLAKDVVASRLENGISFTEFTYQILQGIDFYIL NRDYGVQMQIGGSDQWGNITSGIDLIHRLEGNERPAFGLTIPLMLKADGTKFGKSAGGAV WLDPEKTSPYEFYQFWINQDDRDVVKYLKYFTFLSHEEIDALAEKVKNEPWKREAQKTLA AEVTKFVHGEAGLEEAQMITDALFSGNVKELSVKQIEQALKNAPSAESSNEKKNLVDFLV DTKIESSKRQAREDIQNGAIYVNGNKVQELEFEVDPSASFDGKYVIIRKGKRKYTLVTIK Prediction of potential genes in microbial genomes Time: Wed May 25 14:06:54 2011 Seq name: gi|260196038|gb|ACQN01000029.1| Lactobacillus jensenii 115-3-CHN cont1.29, whole genome shotgun sequence Length of sequence - 5632 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 3 - 62 2.4 1 1 Tu 1 . + CDS 86 - 2662 1705 ## COG4485 Predicted membrane protein + Term 2664 - 2697 4.5 + Prom 2679 - 2738 6.9 2 2 Tu 1 . + CDS 2772 - 5372 1749 ## COG4485 Predicted membrane protein Predicted protein(s) >gi|260196038|gb|ACQN01000029.1| GENE 1 86 - 2662 1705 858 aa, chain + ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 8 843 16 841 850 176 24.0 2e-43 MKKIPKCIIPALISAFIFLLAGLITGTNPYFGGVPNSGDLATQYYSFFGYLRHVLIGNFS DFSYSFSNGLGGSMAGNWGYYLLSPLNFIILLFPANQLNIAIYTIILIKIMIASSSFYYL AKRLNNNSYPIAISLGVAYSLSSYVIGYWGNLMWLDAVALLPLVILGLTKEVLQLKFSLL YILTLAIIIVANYYTGYMICFFLIGFFIYLSFLSFSSWKNLLKQIIYFGISSLSAALLSA FASVPTFYNLLENKLNYHLPAPVIDAKRNLLSIGANLLFRGNISSLPLIYIGTISIILVF AYFFNGKVALKQRIAGLLLLLFTFSGLISTKIYLLWHGGQPPIFYPYRFAFIITFTLIYL ASISINHIQHLPQRTFWITNAFLICFIIYYVLIVKKVLGIPKSSLFATLIVLVISIIILN LYILEKINSKFIALLLIVDIFLNTWVTWSTTSKNVTSYNPYTEQTASLINKLPTSAKSQR LEKSFLLNNDRGESYTFNYRGVNVFSSNNDPHLSKLLGLLGLPSIGYYTYYSTGTQLTDA LLGIKTYIMSNKATTVKGFSNYGLRDDLVSNKNWYKDKNNIAYKMAVFPLVFAGYSKNNL NLKSNSALLNQEKILQSLTNTKTVYFSNAITPQITSNNMLIKTSNNLISMQQIKKKKSSV IFTYQAKPNSNGYIMLDPTIMSWGKYISDASKMTINGHSFRSLSVNLQPIGIHIPENGKL ILKIYWKPSILNKKIIQPNLYLLNENALFKSIQLVQSRKMAITTWKGNSISGTITLHKGQ SLLTTIPYSNGWYATANGKKVKIQKYLGCFIALNLPAGKYTIQLNHKMPGFKLGIIISIF GIFVLILLKKLSSKYLQC >gi|260196038|gb|ACQN01000029.1| GENE 2 2772 - 5372 1749 866 aa, chain + ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 4 848 12 863 883 182 24.0 3e-45 MKKIPKFVIPVLISALLFLLAGLFTGTNPYFGGTLNSGDILDQYLSFFGYLRHILLGNLS DFSYSFSNGLGGSMAGNWGYYLLSPLNFIVLLFPATKVNLAIYTIILLKVMVASGSFYYL AKKKMGATDTWSISFGVAYSLSAYVISYFGNLMWLDAIAFLPIIVYGLLSIIDGKFSITY VIFLAITIVANYYTAFMTCLFLVGFFFYQAFITFTNWKVFIKKFVIFAISSLTAALISSF ASIPTFYNLLENKLNYSLSTSPIHPKSLLLALPGNLLFAGNKLAVPLMYIGTISTLLVIT YFFNSKFSLKERIASLVFLFFIFSGLFSTKLYLLWHGGQPPQYYPFRFAFLIAFSLAYFA TLSVSKGLPFNKKNILTWNSVFLFFIIIYYFFSRKLLGIDKQVSIITISVFIISVILINL YIRKQIKPYVLALVIILDIFANTCLAWSKISKNVTSYNPYTEDTIAFLNKIPKQAKKQRL DKSFLINNDRGESYMMNYHGINSFSSNNDSKLTTFGGLLGLPSIGYYTFYSTGTQLTDAL FGLNTYVVSNRLSDMRGFYNYGLRDDLIGNKIWYQNKTNVAYRINTFPLAFAGYQANNIK LKENNPLSNQVTVLNSLTNTNTQYFSKAISAHETSNNMTLSHNANLLTMNQISTKSPSTV TFTYHAQPNSRGYILLDRSLMMWADYTDINSAASKLTINGKSFRSLPVNLQPIGVHIPKN GKVVLKIYLRKNIKNKIIIDPKLYLLNQNNLNKTIKLVKSRAMSLTTWKGNYISGHIHLK RGQALITTFPYTSGWQATANGKPVKITKALNRFISLKLPAGNYKIIFKHTMPGLKLGTII SIIGIVLFGAEIHHFKYKNHRIKKGK Prediction of potential genes in microbial genomes Time: Wed May 25 14:07:05 2011 Seq name: gi|260196037|gb|ACQN01000030.1| Lactobacillus jensenii 115-3-CHN cont1.30, whole genome shotgun sequence Length of sequence - 37460 bp Number of predicted genes - 33, with homology - 32 Number of transcription units - 17, operones - 11 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 935 713 ## COG4485 Predicted membrane protein + Prom 937 - 996 7.8 2 1 Op 2 . + CDS 1016 - 1960 544 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 1987 - 2036 10.2 - Term 1969 - 2030 13.6 3 2 Op 1 . - CDS 2053 - 2670 408 ## COG0344 Predicted membrane protein 4 2 Op 2 . - CDS 2673 - 3818 1473 ## COG1316 Transcriptional regulator - Prom 3872 - 3931 9.8 - Term 3916 - 3960 11.1 5 3 Op 1 . - CDS 3971 - 4663 1045 ## COG0588 Phosphoglycerate mutase 1 6 3 Op 2 . - CDS 4626 - 4826 138 ## - Prom 4861 - 4920 2.7 7 4 Op 1 36/0.000 - CDS 4923 - 7466 2909 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 8 4 Op 2 . - CDS 7484 - 8185 326 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 8315 - 8374 11.2 + Prom 8060 - 8119 6.1 9 5 Tu 1 . + CDS 8300 - 8857 490 ## COG1309 Transcriptional regulator + Term 8878 - 8917 3.0 - Term 8866 - 8903 6.4 10 6 Op 1 12/0.000 - CDS 8907 - 9368 501 ## COG3610 Uncharacterized conserved protein 11 6 Op 2 . - CDS 9370 - 10137 689 ## COG2966 Uncharacterized conserved protein 12 6 Op 3 . - CDS 10149 - 11690 1794 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 13 6 Op 4 . - CDS 11748 - 12116 448 ## LBA1760 hypothetical protein - Prom 12279 - 12338 9.8 + Prom 12252 - 12311 12.2 14 7 Tu 1 . + CDS 12462 - 12947 719 ## LSEI_0249 cell wall-associated hydrolase + Term 12991 - 13016 -0.8 - Term 12976 - 13006 3.4 15 8 Op 1 . - CDS 13018 - 14805 2034 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 14825 - 14884 5.4 - Term 14836 - 14873 4.0 16 8 Op 2 . - CDS 14886 - 16706 2374 ## COG1705 Muramidase (flagellum-specific) + Prom 17032 - 17091 10.1 17 9 Op 1 . + CDS 17145 - 17549 382 ## lhv_0177 hypothetical protein + Term 17595 - 17624 -0.2 + Prom 17576 - 17635 3.8 18 9 Op 2 . + CDS 17657 - 19699 2070 ## COG3158 K+ transporter + Term 19701 - 19743 11.4 - Term 19689 - 19731 11.4 19 10 Op 1 . - CDS 19734 - 21677 2437 ## COG3590 Predicted metalloendopeptidase - Prom 21700 - 21759 4.5 20 10 Op 2 1/0.200 - CDS 21780 - 22994 1123 ## COG0477 Permeases of the major facilitator superfamily - Prom 23015 - 23074 7.3 - Term 23029 - 23083 7.0 21 11 Tu 1 . - CDS 23084 - 24376 1215 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 24408 - 24467 7.2 - Term 24505 - 24541 5.1 22 12 Op 1 . - CDS 24549 - 25115 584 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 23 12 Op 2 12/0.000 - CDS 25124 - 25840 743 ## COG0602 Organic radical activating enzymes 24 12 Op 3 . - CDS 25830 - 28058 2591 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 28181 - 28240 5.2 - Term 28199 - 28237 4.4 25 13 Tu 1 . - CDS 28259 - 30208 2236 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) - Prom 30229 - 30288 8.8 26 14 Op 1 . - CDS 30312 - 31688 1175 ## LBUL_0182 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase - Term 31700 - 31729 0.5 27 14 Op 2 . - CDS 31741 - 32226 600 ## LCRIS_00151 hypothetical protein - Prom 32247 - 32306 5.5 - Term 32253 - 32291 5.5 28 15 Op 1 8/0.000 - CDS 32308 - 33120 959 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 29 15 Op 2 9/0.000 - CDS 33120 - 33920 888 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 30 15 Op 3 15/0.000 - CDS 33913 - 34686 337 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 31 15 Op 4 . - CDS 34718 - 35647 1216 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component - Term 35962 - 35995 3.1 32 16 Tu 1 . - CDS 36020 - 36502 576 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 36606 - 36665 6.3 + Prom 36549 - 36608 7.5 33 17 Tu 1 . + CDS 36635 - 37435 555 ## COG2365 Protein tyrosine/serine phosphatase Predicted protein(s) >gi|260196037|gb|ACQN01000030.1| GENE 1 3 - 935 713 310 aa, chain + ## HITS:1 COG:SPy2211 KEGG:ns NR:ns ## COG: SPy2211 COG4485 # Protein_GI_number: 15675943 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 47 309 602 858 858 74 29.0 2e-13 TTRLTDSAVGFKNYGLRDDLKINKIWYKDKYNTAYQCNTFPLAFAGYKANNLQLAIKQPL ENQTKVLNALTGSKQVYFSKPISAQITSTNLVVKKDKNQLNYQSKKATLSTLTFTYKAKP NSVGYIVLDNNLMGYADYTSAASSLTINNHTFRSMPVTYQPIGVYVPKSGKVTLKIKLKK EISKGSLLNPELYLLNKQALNKTISYAQNNRLKLSKWTNNQIEGIVNIKQGQSLITTIPY TSGWKAFSDGKPVKIVKALNRFIALDLPKGKHKVTLKHTMPGLKLGIIVSFIGLIALVFE YLIIKKSLFK >gi|260196037|gb|ACQN01000030.1| GENE 2 1016 - 1960 544 314 aa, chain + ## HITS:1 COG:lin0625_2 KEGG:ns NR:ns ## COG: lin0625_2 COG0584 # Protein_GI_number: 16799700 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Listeria innocua # 71 298 1 227 243 64 24.0 2e-10 MKNIKSKGVTIFSIILASFSVGLGYCIGYANAPKVIQTNNNNDNYIKQGVNLEKNYANYI NYFAAKHVISHRGSGSNDEIEHTFAAYDQAIASGSHYIEQDLVSSKEGTLWVSHDPSARR IFHCNQLFRDMTDSEIEELKTANNEHCHRLSEVFNHYKKDKDVNFVVEVRTKWDFNQIPT LVKTIHECKIPVSRLIIQCWTKEDAARIKKFLPKVKTLFLCGDYPAFEEATKDSNIDIVA PEEHLAYPQNIKFAHKHNKQFCTWTIDSSAQIKQAIKNGVDYYFTNYSAKAIDYEKIYRC PSFKTFLKRNHYKL >gi|260196037|gb|ACQN01000030.1| GENE 3 2053 - 2670 408 205 aa, chain - ## HITS:1 COG:PA0581 KEGG:ns NR:ns ## COG: PA0581 COG0344 # Protein_GI_number: 15595778 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pseudomonas aeruginosa # 8 116 7 115 189 82 40.0 5e-16 MIHFSSFIIGYILGNFLFALIVGKYFLHADPTKNGSGNPGTANMGAVFGKKWGILTLIGD AVKSILALTITWLLFKSQLAMAYCGLGLMLGHCYPVTNHFKGGKGVAVIGITMLAVDFKM ALIILLIALVLTIIMKNLTIPPLFFTYCFGVVSLSLGKTNRGLIFLVIGIIMTIRFWKDI IDFVQGKGKKVDILFSIKKKIGIKI >gi|260196037|gb|ACQN01000030.1| GENE 4 2673 - 3818 1473 381 aa, chain - ## HITS:1 COG:SPy1733 KEGG:ns NR:ns ## COG: SPy1733 COG1316 # Protein_GI_number: 15675582 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 23 374 6 373 424 187 34.0 4e-47 MQNNYPSNSRVALYESNKRKRNKKLRLIIGVMMILLLGIGSYIGYIFFRTKGAIDKTYDP KTAVATNSSTFNGKKSFAVLLMGTDTGAFNRTDKMGNTDTMIVAVVNPSKKRYTLMSIPR DTMAQMVGAKSLTAEKINAAYSIGGAKMAMNTVSKLINVPIKYYAVINMGGLRKMVNGVG GVTVTPPLSFSYGGYSFKKGKKTKLNGSQALAYARMRYDDPTGDYGRQLRQRQVIMSLIE NASSISTLANLESILNSVSENVKTNLSFNNLMAIFQNYKSSTATSKSDYLHGLSVTIDGA SYQVMSDTELQRVSDYVRSELGLEKEKISNFETYENKLNEQNGFSFSSTEDQEYTVYDYG SDTSSDTNSDSDQDNDDTGDY >gi|260196037|gb|ACQN01000030.1| GENE 5 3971 - 4663 1045 230 aa, chain - ## HITS:1 COG:PM1506 KEGG:ns NR:ns ## COG: PM1506 COG0588 # Protein_GI_number: 15603371 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Pasteurella multocida # 3 228 2 227 227 308 65.0 4e-84 MSKLVLIRHGQSEWNLSNQFTGWVDVNLSEKGVEEAKRAGRLIKEHGLKFDQAYTSVLKR AIKTLHFALEESDQLWIPETKSWRLNERHYGALQGLNKKATAEKYGDEQVHIWRRSYDVL PPAIDDDNEYSQAHDRRYSNLDPNIVPKAENLHVCLDRVMPFWEDHIAPDLLAGKNVIIA AHGNSLRALTKYIERISDEDIMDLEMKTGEPVVYTFDDKLNVTDKVKLDD >gi|260196037|gb|ACQN01000030.1| GENE 6 4626 - 4826 138 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFWKTYCERGIPTLPKKTTSFHEKWSFYIFLTYANKFIRCKIVSETLNYLKEIFHVKISF NPSRSK >gi|260196037|gb|ACQN01000030.1| GENE 7 4923 - 7466 2909 847 aa, chain - ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 3 847 6 896 896 695 44.0 0 MKKKILWKDAWQAITGSLGRFVAIFMLMMVAVFTFIGLKMTGPDMRSTAVDSFKNNNLAD ITVVSNYGLNSKDKQKIENQSGVKKVEYSYLQDSTVNDSKKSLRVYSESKKISKVELTKG HMPKNSSEIVISYLLKDKYKLGKKITLDNHSSLKHKKFKVVGYVRSSEYLDKHDMGQTTV GTGQLSGFAFVKKSAFKSGTTTGIARITYKKTAKMNPYSTKYSNYINDKEKDLKKELDKN ISAKESKTKNKIAEINDSLTKLNAIVAVKPEYQSQIKQLESAKAKLEHLNKPSYTVNTRD EFPGYENYRSNAERIDVLSNIFPVFLFAISALVSLTTMTRFVEEERINIGTMKAIGYSNF DVAKKFIVYSMLSSTFGVIFGAFGGFRILPGIIFEAYAANSTMTGFRSQFSLAWLILGLV VAWACTTLAALYALKKDVKDRPAQLLLPKPPKKGSKIFLERITPLWSRLSFNHKVTFRNL FRYKTRMLMTIFGVAGCTGLLVMAFGIRDSLSGISKNQYTNIIKYDMIAVKNSNPSSKQN ADLLDELDSNSVKRYKRIHFTTLNRNLGEDKTKQTINVIVPKANTDLSKYINLKSSSTGK KLKLTNNGVVISEKLAQLTNAKVGHYIKLKDTNDKWKKFKVSGICEMYMGHYMVMNKQAY KHYFDKEYKTNGYLISTKSGKLQTVSEKLMDTGAIKGINQNVNNKKTIDNLINSLNKVIL ILIAISTILALVVIYNLTNINVDERMRELSTIKVLGFFDKEVTMYIYRETIILSILGILA GYLVGIWLHSFIITTLPPVNAMFDPNMYISNFIYSALIPAVITTVLAFIMHKKIKDVDML DALKSVE >gi|260196037|gb|ACQN01000030.1| GENE 8 7484 - 8185 326 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 228 1 226 245 130 36 2e-29 MSIIDVKNSSKEYKTGNTTVLANKNITFSVDKGQLVIILGSSGAGKSTLLNILGGMDTNT SGDVIINGHNIANYSRKELTAYRRKDVGFVFQFYNLVPNLTAKENVELAAEIVPNAMEAS EALDAVGLGDRMNNFPAQLSGGQQQRVAIARAIAKNPAILLCDEPTGALDYQTGKHVLKI LQEMSTKKGSTVIIVTHNAAIAPIANQVIHVHDGQVKRIEKNEHPTDISEIEW >gi|260196037|gb|ACQN01000030.1| GENE 9 8300 - 8857 490 185 aa, chain + ## HITS:1 COG:SPy1258 KEGG:ns NR:ns ## COG: SPy1258 COG1309 # Protein_GI_number: 15675217 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 5 171 4 172 180 83 31.0 2e-16 MGNIRRTNSKQKIKDAFIYLLKTEGYQKMTVSSITKKAQINRGTFYLNYLDKSDLWREIK ETILTDISACLKIEPQNPHFFSEASLKEVINYLIKHQKLLFSILNSDLYPEFIADFYKTL VKIFSKYHNQNNGPLKQPYAYEVVFSGIATIFTLWIRREMRESPEELLKIIKAYRENAPT NILSL >gi|260196037|gb|ACQN01000030.1| GENE 10 8907 - 9368 501 153 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 135 7 135 152 115 46.0 2e-26 MAIWLQILINIVFSIIGSMGFALTINVPRRALFLTGISGACGWMTYWVLIRLHSGRMIAN LVGAFVIGMLGLFFARIKKCPVSVFNIPALVPLVPGAPAYMAVRALVQGKYDVAEDLMLR VGIITVAIALGFLLSTLQSEFIYRLKMHYKNKQ >gi|260196037|gb|ACQN01000030.1| GENE 11 9370 - 10137 689 255 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 15 253 13 249 250 182 41.0 5e-46 MFEDKERLKEVQRICLLAGHLMIEGGSEMSRVEDTMLRIARNAGVTDPQVFATPTGVFLT LDSGQLSQIEQVRERNINLELVDRVNNLSRQFANKEIDLQELDEKLHDVATNTAAFPLWL QLVGAASLSSTLMILFFDSYDWLDFPAAAIVGCLGFLVYYFIQKYTRIRFLSELIAAMFM ALLTYLIRLLVPECSIDKILVGALMTLVPGLALTNALRDLFAGDLMSGIGRFVEAVMTAL ALGGGVGIIMRFLGA >gi|260196037|gb|ACQN01000030.1| GENE 12 10149 - 11690 1794 513 aa, chain - ## HITS:1 COG:CAC3339 KEGG:ns NR:ns ## COG: CAC3339 COG0488 # Protein_GI_number: 15896582 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 499 1 501 518 427 44.0 1e-119 MSLLTVTGLSQGFIDKTLYEDANFVLNKEDHMGVTGQNGVGKSTLIKILTGEIVPDDGQV KWQKNIKVGYLDQYAKLTPGMTLKSFLKTAFADLFAQEEKLNNLYVEYSEKGDQTLLDKA GKIQTHLEEVGFYDIDTAIDQVASGLGLLELGYDKDVSEMSGGQRSKLILAKLLLEKPQV LVLDEPTNYLDVNHIDWLVTYLNDFEGAFIVVSHDYDFLGRITNCIIDIDFGTITRYTGD LKHAMRQKAQDRETYLKAYQNQQRKIAKTEAYIRKNKAGTRAKSARSRQKQLDRMEKLTP PQNNKRAKFDFPYVATASNLLLQTQDLVIGYDQALVKHAFNFSVGGNEKVAVTGFNGIGK TTLLKTLLGKLKPVYGSFELSATAKLAYFKQDLAWPNKNMTPLQYLAECYEKIKPKELRQ ALARMGLTAQQAMSPLGELSGGEQEKVKLAKMQFEPANILFLDEPTNHLDNETKDALRKA IVNFPGAVIIVSHERDFFRGDWVDKTIDIEKMN >gi|260196037|gb|ACQN01000030.1| GENE 13 11748 - 12116 448 122 aa, chain - ## HITS:1 COG:no KEGG:LBA1760 NR:ns ## KEGG: LBA1760 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 5 122 6 123 124 142 60.0 4e-33 MTNRNIFPIIYAVISAVLTFIAMFFILFNTFHMNLSFTIFGAAIIAVMFYIYSYFRAHAS AEIKRIVYQYGLDDAELARLTGLKKSDFPIYQDKLQLILPKRMWPRVLHILQEYEQEQKS KG >gi|260196037|gb|ACQN01000030.1| GENE 14 12462 - 12947 719 161 aa, chain + ## HITS:1 COG:no KEGG:LSEI_0249 NR:ns ## KEGG: LSEI_0249 # Name: not_defined # Def: cell wall-associated hydrolase # Organism: L.casei # Pathway: not_defined # 74 161 141 228 228 146 86.0 2e-34 MRAKLIKERQKAAIEELTKNAKAEQAKMDAQAKAEAEAKAQEEQKQAQQAVTQAPTPTAN TASQANTQNISGVNKGTFKLSFYDPAALGSNMGYGGVAANLSVFPKGTRLKITLSDGTVW YRVVNDTGGFAAANPNQLDVAMPNSQVPAAGILYATVEVIG >gi|260196037|gb|ACQN01000030.1| GENE 15 13018 - 14805 2034 595 aa, chain - ## HITS:1 COG:SA0868_1 KEGG:ns NR:ns ## COG: SA0868_1 COG0475 # Protein_GI_number: 15926598 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 380 6 396 399 248 42.0 3e-65 MLLVILMALVIPILMAKFNLRNIPTAVAEIIVGIILGVSGFNWVDTSNSQLNFLSNLGVI ILIFLSGMEIEFDLFNKKQDSQINPVKIAAISFLGIAIFSVSLGVVLSILGLFKDIFLAS IIFMTVALGVVIATLKEKEILSKTIGQSILLTAVLGEVIPLLGLTIYASIHGGDAEKLWL IILLFLAAIVLLIRFKRPYLWFNKITKQTTQIDIRLAFFLIFALVSIAEKVGAENILGAF LAGIVMKLLEPSEATKDKLTSIGYGFFIPFFFMMTGAKLNLKSLFTNQAALMLLPILVLA FFIAKLPAALTYLKFFTKGNALAGGLLTATTITIVLPTLQVARKLNAISQTQSDAFTLAA IITCIAGPIIFNSLFKLAPEDKIKEKVLIYGANVFSVAVAQELHNKWYSVEMITDDQEAY NTYKSRVESLVYCDNILATTDFNYDIVASSGSDDERNYEFAKKAKEAGTQRVIVRQKQPD ANRIAELGQLDIEVFNGYSARTSAMRALIESPAFYEILTDSDNILYDVKIQNHRYAGHQL MDLSFIDKITVSRIKRDGEWLAPHGTTVLEVGDEIVYTGKVEDADMIRELLSRKN >gi|260196037|gb|ACQN01000030.1| GENE 16 14886 - 16706 2374 606 aa, chain - ## HITS:1 COG:lin1064_1 KEGG:ns NR:ns ## COG: lin1064_1 COG1705 # Protein_GI_number: 16800133 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 15 194 22 201 201 125 45.0 3e-28 MKTKKITGVATAALLASVAVPVTNNLANIETSYTVKAATKEQAFLNTAVPNAEVASARYG TYTSVMLAQAILESGWGVSSLATQANNLFGMKGSYNGQSYYADTAEWAAGTGYYNINAGF RKYPSWEASFEDNGYLLRTGTYGYSNRYRMAWVENAANYQVATQGLKDGGYATDPNYPRS LNNVIQYYGLNQYDPSIDNTTRVMKVTSNGTVYSGPASPNVVSATGSVTAGQVITVDKTI TYKNGMSYMHTGNGWISGSLLAGGSSQSPVNEKPGTSSNSGSPIAKITYSSPVYVWEGPN KNITSRTLSVGSSWKIFGKTTVNGETWYNLGGNQWILAKYVYATGLSSVPTVNTSASTTT TAKTNSNTQSNFVSERTVKKVNYVPGYGIMLWKNPGSEMLGRYLSHGSRWQVYGYVTVNG NKWYNLGGNQWVDGRYLVDGNATVAGESKKATTATPSNFVSERTVKKVNYVPGYGIMLWK NPGSGMLGRYLAHGSRWQVYGYVTVNGNKWYNLGGNQWADGRYLVDDATKNNITSVENMS AVGQVNYVPGYGIMVWKNPGSGMLGRYLPHGSRWRVFKKATLANGTTWYNLGGDQWVDGQ YLKLEN >gi|260196037|gb|ACQN01000030.1| GENE 17 17145 - 17549 382 134 aa, chain + ## HITS:1 COG:no KEGG:lhv_0177 NR:ns ## KEGG: lhv_0177 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 7 134 17 144 144 138 57.0 7e-32 MTEELNKNTDEFEVVVPEANREEMPKAEFKEQPAYLVNFANFYIAKYNQNDLEIMGSFDK KGNILDINTYLLNNINFSRKELVKHVLNVHDYNFKSLLDEVVAKSNIDPESFATFEDWDK WYEAERNQIPGSLS >gi|260196037|gb|ACQN01000030.1| GENE 18 17657 - 19699 2070 680 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 7 664 10 661 666 672 53.0 0 MKLKKRDQLTAAGLLISIGIVYGDIGTSPLYVMKSIVAGNGGMTNISRELILGAISLIFW TVTLLTTIKYVAIALKATNHGEGGIFALYALVRKRAKWLVIPALVGGAALLADGALTPAV TVTTAIEGLKGMEFGGNILVSTQGMVILITVCILLLLFAIQRMGTSLIGKAFGPIMLIWF TFLGVIGLLNMANDWSILQALNPIYAVKILFSPVNKVGIFILGSIFLATTGAEALYSDVG HVGKANIKGSWPYVFVCLILNYLGQGVWILQNPCFKTSGDFNPFYQIVPENIRIYAIILA TLAAIIASQALITGSFTLVSEASQLKFLPRMNIVYPTTEQGQIYIPSVNKMLGATTLAVV FFFQTSEHMESAYGLAITATMLMTTILLSEYLAKKGVHLVWRILFLIFFAAIEIMFLISS LVKFVHGGYVTVIIAGLIGIVMYIWYFGNKVRDKREARNSYVRLDEYTSMLTNLSHDENY PTYATNLVYMAKVKYNKFIKREVLYSILDKRPKRAKAYWFVTVNVTNEPFTAEYAVNTYG TKNVINIQLYLGFKKQTSVNVYLRQIIHDLIADGTIESQPQEYTTTPGRDVGDFSFVIVQ DVVSPQTELTTYEKWIIQARVGLQNSSSNPASWFGLDYADTVVERVPLILGRPTPSYIKR VDPINYANLKKKLKGDGNRA >gi|260196037|gb|ACQN01000030.1| GENE 19 19734 - 21677 2437 647 aa, chain - ## HITS:1 COG:SP1647 KEGG:ns NR:ns ## COG: SP1647 COG3590 # Protein_GI_number: 15901483 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Streptococcus pneumoniae TIGR4 # 21 647 3 630 630 484 41.0 1e-136 MNNLAVRGGAGDITNPKSGVRPQDNLYLAVNSDWLKTIEIPADRSSMGSFGKIDENVEKQ LMQDFADFADGKKVIPDLPNLDKAVALYKVARNFDKRNSEGAEPIQADLKKLLNLKDFVD FKNKALELDKAGFPLPLLFGVEPDMKNTKINILKNVGPSTILPDTVTYQTEAKEQLLPIY QKQTVNLLEMAGLSSNDAEKYVEKALEYDERIAKVVKSSEEWADYPASYNPMSLADFAAK FKSYDIVRHIEGLVGMKPDRVIEADPGYLDHAEELFNATVFEEIKGWMLARFINNVASTL SADFRKAAFPFSQALYGLAELSSGEKQAYRLANSRFSEIVGIYYGQNYFGKDAKADVIDM IHKMIKVYEKRLAENSWLSKATRDKAVVKLQALELKIGYPEKSEEVYNRFKVDESVSLYE NTVVNNRLAQEYEYEQLPKPVDRTVWAMPGNLVNACYDPQRNDLTFPAAILQKPFYDLNQ TRSENYGGIGVVIAHEISHAFDNNGSQFDELGNMVNWWQDEDYAEFKKRIQAEIDLFDGI QYGPVKLNGKLIVSENIADQGGLTAAVHAAKGEGDASMQELFENFARVWAIKQKEEAIKS ITAVDVHAPGPLRANVQSQCQEEFYKAFDVKPGDGMYLEPEKRVEIW >gi|260196037|gb|ACQN01000030.1| GENE 20 21780 - 22994 1123 404 aa, chain - ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 18 376 10 365 393 200 33.0 4e-51 MKTAHGASQVKEVNIHSLLLGELITWLGSSFIWPLTSVYLNKELHVSLAMIGVVLFFNCM ANMFGSMIAGRLYDRMNPYPLVVAGLFLDAVVLFLLALFPGWPEYWLWLTLAGFFAGWDG ALINSMATSIKKIPSKKVFNLIYFAQNIGVVTGTLAVGYLYDFSVIFLFVLAAILYLLAT INAAINYRPIIAYHKELLKNKVKKEKKKVKLPKANVLMNYGLFITLGITWLMYMNWESNL SVYIVSFNIPFHMYSLLWTVNALIIVIIQAVLARFEHIFKTTFQQVVLGILMFSLSFVTL IFARDFSHFLLSMVILTFGEATAFPAIPSYVNDLTPIEVKGEYQGLTIVASSAGRAIGPL IGGLIIDRFSYIPFFIFAAIIIFLCLMILVPMHTRVKPKIKLFK >gi|260196037|gb|ACQN01000030.1| GENE 21 23084 - 24376 1215 430 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 43 383 19 367 419 165 32.0 1e-40 MKVLKKIATLVTLVITMLTVVACSNNKKNTTSSVNIPKKISKKTTITFWNAMVGPLQNNL QELTKEFEKQNPNIKVKLEYQGSYEDIKSKVQNTLQSPNNLPTIAQSYAGYLYTAAQGGY LQDMTPYINNTNVGWGSVNKSDINKTLLEGAQINGTQYGIPFNKSVEVLYYNKTLLDKYD ISVPKTMAELKTAAKKIYEKTNHKVVGAGFDNLSAYYTDGMKEEGYNFNSKINFAGSASK NVIKYYANGIKDGYFMIAGSQKYLSGPFANEQVAMYVSASAGEAYGKKGLNGKFEYGVAN RPSKYNMARGSDIYMFKHASSMQKAAAFKYIKFLTSKSSQLKWANATGYIPVNNEAVNSA AYKNSTSIKSPAVLEQALKRLYNFPVTKNSETTFNDVSSILSGILSQAKTKNIDSLIKAG KTKFDSDWKQ >gi|260196037|gb|ACQN01000030.1| GENE 22 24549 - 25115 584 188 aa, chain - ## HITS:1 COG:CC1859 KEGG:ns NR:ns ## COG: CC1859 COG2151 # Protein_GI_number: 16126102 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Caulobacter vibrioides # 7 105 20 118 118 100 48.0 1e-21 MEEKQLKLVDEIIQKLQTVIDPELYVDIVNLGLICGIDLNDNNDCTVTMTLTVMGCPLSG VLDNAIKEAVLSIPEIKSCEIKLVWSPAWSVERMSDAAKTQLNVWSKDLSSYDSSNKKID FSTPVKKYIDKYDDFLDLLLELGFDHFKIPNMVETVGRVMTLKQASQAMKVSLPAVKERL ESAGYQVI >gi|260196037|gb|ACQN01000030.1| GENE 23 25124 - 25840 743 238 aa, chain - ## HITS:1 COG:lin0306 KEGG:ns NR:ns ## COG: lin0306 COG0602 # Protein_GI_number: 16799383 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Listeria innocua # 55 234 3 182 183 265 68.0 8e-71 MPSRDQNAQEGPDIRHNYIKVNVGGDTIFVDSNQYLPNIKKDRAARKLRKHKPKDPKPKE WLASEHSLQKIADYKPFNFVDGEGVRCSLYVSGCLFDCPGCYNLVAQNFNYGRPYTQELE DQIIKDMSEDYVQGLTLLGGEPFLNTQVCLKIVNRIRKEFGHKKDIWSWSGYTWDELMQE SEDKLELLSKIDILVDGRFEEDLKDLTLQFRGSSNQRIIDVPASFKAGKVVIWKNLVH >gi|260196037|gb|ACQN01000030.1| GENE 24 25830 - 28058 2591 742 aa, chain - ## HITS:1 COG:L70400 KEGG:ns NR:ns ## COG: L70400 COG1328 # Protein_GI_number: 15672255 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Lactococcus lactis # 27 730 17 727 747 920 60.0 0 MRGTGHMLKETPSKKMIVEAMKKPQYLVKRDSTKTNFETYKLDLVIHNLKLEDHEVEILK AIFSDLAMKDTVSAAEVAESFVDNLTKLGFVDEAKAYIEYRKKDDADWKKQIDTKARLKR MIEGDPSIVNENANKDSEIFSTQRDLTAGTVGKTVGLTMMPEHIAKAHLRGDIHWHDLDY TPLSPMTNCCLIDFKEMLTNGFKVGNAFMTSPNSIGVATSQVAQIITQVASSQYGGCSFD RADEVLAPFAQKNYDHHLEEAKEFIDDEEKAKAFAKKRTQKDIYDAMQSLEYEINTMFSS QGQTPFTTLGFGLGTNWIEKEIQKDILKIRLAGLGKDKRTAIFPKLVFTLKKGLNLNPGD PNYDVKEIALECATYRMYPDVVSYDTIKRLTGSFKAPMGCRSFLQGWKDKNGKEVNSGRM NLGVITLNLPRIAMESRGDKDLFWKIFEDKVQLVHDAMNIKAARCREAKPENAPVLYENG AFGKRLKPDEDVNQLFENGRCTVSFGYIGLYEVGTVFYGPNWEHNKEAHDFTVEIVKRMH DWCAYWEKTEKYHYHYSVYSTPSESLTDRFCVLDTEKFGKVKDITDKEYYTNSFHYDVRK HPTPFEKLEFEKDYPPYAAGGFIHYCEYPNLKQNPKALEAVWDFGYDKVGYLGTNTPIDR CFKCGFAGEFKATAKGFECPVCGNHDPETCDCVKRTCGYLGNPLKRPMVHGRHEEIAHRA KHMSLGMVRDQAQEEEKIQDAK >gi|260196037|gb|ACQN01000030.1| GENE 25 28259 - 30208 2236 649 aa, chain - ## HITS:1 COG:L0095 KEGG:ns NR:ns ## COG: L0095 COG0367 # Protein_GI_number: 15674210 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 627 1 618 625 666 51.0 0 MCGIAAFYNPEINDKQAAIGKMMEAIKHRGPSSDGMYTNDVMALGFRRLSIIDLRGGTQP IFNEDKSKAIIFNGEIYNYKPIREDLIKAGHTFTTKADTEVLLHGYEEWGMAGLLKKVRG MFAFIIWDDEEKSMYGARDFFGIKPMYYQNKDGKLLVGSELKSFLAYPDFQKELNVEAVK PYLMNQYNDLKETFFKGVYRFPAGHYFKFKDGQMDIKQYWDAEYKENNLSFEETLDKINE DLKETVELYHNADVPVGAFLSEGVDSSFVTSLLNPDDVFSISFDDSTYDEASKAKALADI KGWHFFADKVDADEAMRDFPEMQYHMDEPDANPSIIPLWYLSKLARKHVTVALSGEGADE LFAGYVNYGMHTHNNVIKVFTSGLKKLPKGVKVSLAKGIKKMPNFPGKVHMYTNLAKPSE FYVGQSVIYDMDHPTIFSSDDANSMLQPTYRNELTTNGLYQEDFKKVKDLDNVKQMQYID LHHFMLNDILQKADKISMAHSLELRVPYLDRKIAELANSIPTKYLVNKHDTKYALRKASE RVLPEEWAKRPKLGFPTPIKQWLKEERFYKQVRKLFCEDFVNDIFEQEKIIDLLDENFKG DGSHRRQIWAIYTFLVWYKLYFINYEETVKKYQHVQPEVAALIEQGKLV >gi|260196037|gb|ACQN01000030.1| GENE 26 30312 - 31688 1175 458 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0182 NR:ns ## KEGG: LBUL_0182 # Name: not_defined # Def: 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 25 458 32 466 466 651 72.0 0 MLGFFAKKIAQVLNNHKQENNNDTDPMQKFLKVGEYSVGAQENTPDGGDYTLTVYKDDHG ILHQALSPEESDKLAATYVRRFDSRLGRFRAFQNRKTGVRYSVTDYLDTFLDQIKPQIRS GNNSINIGVLTDTHYKATDSVDFYGNNGLIHVREFNHLEKSGLLHLKAHLGDWIDGSDAG LIGESELIKLRNSFKSTRTPFAIIKGNHDENDKFDEHHDLKASFPENEFEKIMWPIMYAQ KELKYVSRYHGVAYFDKDDLRVIFVNTSDVPYILDEQGKKKYDTKLTLAIREDQVEELIE ILSSSSGKKIILLSHGNPINRKGGNALKYNGRSLHELLVAFNQREKGRMHSHNVPPEFTL SNDFDFTNVENAKVIAYFCGHRHVEDQFRINGIQYILFNCSALMGPGHALTTKYNKNWNR QIDDITEFAGYVVNVDLVKSQIQVFGYGAASFKRVFSI >gi|260196037|gb|ACQN01000030.1| GENE 27 31741 - 32226 600 161 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00151 NR:ns ## KEGG: LCRIS_00151 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 161 1 161 161 179 62.0 4e-44 MESLNTIKLADELTTKQDDILADTTKLNAEAIYQLIDELKVLKHPIQEYFEMSQDEYYSI ESDHQLTLLDMNNKLVDLHDRILTNHVDGYVDKDEINLTYNHENPYEDGMYDKENDFHVL AYSLKVISAVMAVAPQKLTEIISKDAVLSLGLAVYALKHNA >gi|260196037|gb|ACQN01000030.1| GENE 28 32308 - 33120 959 270 aa, chain - ## HITS:1 COG:BH0442 KEGG:ns NR:ns ## COG: BH0442 COG3639 # Protein_GI_number: 15613005 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Bacillus halodurans # 16 270 15 267 267 218 45.0 7e-57 MDTTFKQLPAKPVSAKARFAHWALTIFTIALIIWSTTGINFSGIKATAGQITGAIFNGLI HPDWSYIYNGTGEDLVSQLWETLCIAFLGTFISAIISIPFAFWAATTKNKKWYASRSGKF VLTFIRCFPEIVLALMFIKAVGPGSAAGVLALGFHSVGMLAMLFSEAIESLEDGPNEAVI ASGGSKWNVAMFATLPNLMPALISNTLYRFDVSVRSASILGIVGAGGIGYPLTIALNYRQ WNRVGIILIGIIVMVVLIDWISGAIRKKLV >gi|260196037|gb|ACQN01000030.1| GENE 29 33120 - 33920 888 266 aa, chain - ## HITS:1 COG:SA0136 KEGG:ns NR:ns ## COG: SA0136 COG3639 # Protein_GI_number: 15925845 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 11 264 12 265 266 203 46.0 3e-52 MAKLDQEMMELPKKKFQFWNLVWLVVFVGGLVVSTIETNTSLSAFLNNFGQFAEIFTQMA QPDWGYTSTAIPYLIETIKMAVLGTVIGSAIAFVYSLLIARNIIKNKYVTGVLRFIMNII RTLPDLLLGAIFVAVVGIGPVAGILALSVFTFGVVVKLFYEAIETIDPGPSEAVIACGGN KLNMISFAVMPQILPYFISYTLYAFELNVRASTVLGYIGAGGIGLYLKQTLDIFDYAKTG TIIIAVFIVVLIIDYVSSKAREALMK >gi|260196037|gb|ACQN01000030.1| GENE 30 33913 - 34686 337 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 256 1 240 245 134 33 8e-31 MADKPMIQLKNVTKVYDNGTVGLNKINLDIKKGEFVVIVGLSGAGKSTLMRSINRLHDIT EGDILINGESITNARGKELRLIRRNIGMIFQSFNLVKRSSVLRNVLTGRVAYYPSWKSTF NLFSKEDKQKAYEALQRVDMADKVYSRADELSGGQQQRVAIARVLTQNPKIILADEPTAS LDPKTSRRVMHDLKMLNEEFGMTVVANLHSIELAREFGKRIIGIRAGEVVYDGAVENTPQ EVFDAIYSGKTKEEING >gi|260196037|gb|ACQN01000030.1| GENE 31 34718 - 35647 1216 309 aa, chain - ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 306 1 313 318 327 61.0 2e-89 MKKFKKMLVAGLALALATVATACGSKSSSSSKDGYTPKSLTVQFVPSQAADKLEARAKPL EKMLSKKLGIPVKISMSTDYNTVVEAMKSKKVDVGFLPPDGYVLAHKQKAADVLLQALRY GIKQPGGVQTKDLVKFYRAEILVKKGSKIKSWKDLKGKSISVQNPTSSAGYIFPVAELKE KGLDVTKKGNAKLVTVTGHDQAVLNVLNGDTDAAFVFEDARNTVKKDNPKIMSQVVPIYF TKAIPNDTISVRSDMNKAFRKKLAKAFISIGKSKEGKKLIESIYSHEGYDYTKDSGFNIV RKYDKIAGE >gi|260196037|gb|ACQN01000030.1| GENE 32 36020 - 36502 576 160 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 155 1 151 152 105 41.0 3e-23 MANDYKTILVPVDGSEAAERAFDKAVKIAIENGGKIDVLNVIDTRQFIGEMQDTLISGDT IYQMTQDSENYLISLKKWAKDNFDFDKVDYHIRYGSPKRIISYDFIKDNHNDLIIMGATG LNAVERMLMGSVTEYVNQHAMADILIVRTDLENKKINKKK >gi|260196037|gb|ACQN01000030.1| GENE 33 36635 - 37435 555 266 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 10 265 46 297 298 136 34.0 5e-32 METNFSNKLINITNGRNFRELGGYETISGKKIKFHKILRSGHLADLSEDDRSYLTNYGVK YDIDFRSKEEVEKQPDRIPENVQYDFNPVFSDDLTNSSKSIDALETEAEKDPQFGFDHML LAYEDMIHSATARHAYQNFFKFLLSNTHENEAVLFHCTAGKDRTGFGAFLLLSSLGVPLE TIKKDYLLTNITTKSFVENLLIDEKKKGASDNLLQSIKDIQTVHPEYLNHAITVINKNYG SINDYLHNVIQLSNKDIIDLRRIYLQ Prediction of potential genes in microbial genomes Time: Wed May 25 14:08:02 2011 Seq name: gi|260196036|gb|ACQN01000031.1| Lactobacillus jensenii 115-3-CHN cont1.31, whole genome shotgun sequence Length of sequence - 110604 bp Number of predicted genes - 108, with homology - 107 Number of transcription units - 55, operones - 26 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 679 - 723 8.4 1 1 Tu 1 . - CDS 759 - 1235 551 ## LJ0094 hypothetical protein - Prom 1257 - 1316 6.7 + Prom 1237 - 1296 5.9 2 2 Tu 1 . + CDS 1323 - 2018 721 ## COG0846 NAD-dependent protein deacetylases, SIR2 family + Term 2101 - 2149 3.5 3 3 Tu 1 . - CDS 1999 - 2361 374 ## COG3189 Uncharacterized conserved protein - Prom 2392 - 2451 6.6 + Prom 2332 - 2391 4.9 4 4 Tu 1 . + CDS 2415 - 3056 845 ## COG2094 3-methyladenine DNA glycosylase + Term 3286 - 3325 4.1 + Prom 3304 - 3363 5.1 5 5 Op 1 16/0.000 + CDS 3415 - 4977 1492 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 6 5 Op 2 . + CDS 4977 - 5723 283 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 5738 - 5786 11.8 - Term 5728 - 5770 7.1 7 6 Tu 1 . - CDS 5775 - 6617 595 ## lhv_1911 hypothetical protein - Prom 6637 - 6696 5.2 + Prom 6923 - 6982 6.3 8 7 Op 1 2/0.071 + CDS 7012 - 8277 335 ## PROTEIN SUPPORTED gi|148990506|ref|ZP_01821647.1| ribosomal protein L11 methyltransferase 9 7 Op 2 . + CDS 8349 - 9356 1280 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 9376 - 9407 2.1 - Term 9363 - 9394 2.1 10 8 Op 1 1/0.071 - CDS 9403 - 10674 1190 ## COG1653 ABC-type sugar transport system, periplasmic component 11 8 Op 2 19/0.000 - CDS 10676 - 11347 767 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 12 8 Op 3 1/0.071 - CDS 11340 - 12656 1139 ## COG4585 Signal transduction histidine kinase 13 8 Op 4 . - CDS 12656 - 13486 776 ## COG1879 ABC-type sugar transport system, periplasmic component - Prom 13531 - 13590 7.9 14 9 Tu 1 . - CDS 13608 - 14396 809 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 14498 - 14557 6.9 + Prom 14379 - 14438 6.2 15 10 Op 1 9/0.000 + CDS 14593 - 15030 645 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 16 10 Op 2 13/0.000 + CDS 15043 - 15546 735 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 17 10 Op 3 13/0.000 + CDS 15574 - 16425 1138 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 18 10 Op 4 . + CDS 16427 - 17263 950 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID + Term 17322 - 17353 0.1 + Prom 17302 - 17361 5.4 19 11 Tu 1 . + CDS 17396 - 17695 406 ## LSEI_0563 hypothetical protein + Term 17696 - 17731 6.0 - Term 17684 - 17719 6.0 20 12 Op 1 . - CDS 17720 - 18202 452 ## COG3542 Uncharacterized conserved protein 21 12 Op 2 . - CDS 18211 - 18381 205 ## gi|256851753|ref|ZP_05557141.1| predicted protein - Prom 18420 - 18479 7.4 - Term 18508 - 18546 5.7 22 13 Op 1 . - CDS 18562 - 19014 565 ## COG0590 Cytosine/adenosine deaminases 23 13 Op 2 2/0.071 - CDS 19059 - 20450 1511 ## COG0477 Permeases of the major facilitator superfamily 24 13 Op 3 . - CDS 20465 - 21415 1279 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 25 13 Op 4 1/0.071 - CDS 21412 - 22323 941 ## COG0524 Sugar kinases, ribokinase family - Prom 22400 - 22459 11.3 - Term 22386 - 22443 5.2 26 14 Tu 1 . - CDS 22477 - 23223 800 ## COG2188 Transcriptional regulators - Prom 23329 - 23388 6.7 + Prom 23276 - 23335 9.1 27 15 Tu 1 . + CDS 23393 - 24277 902 ## COG0657 Esterase/lipase + Term 24310 - 24350 7.0 - Term 24298 - 24337 -0.8 28 16 Op 1 . - CDS 24341 - 25255 688 ## LCRIS_00095 restriction endonuclease 29 16 Op 2 . - CDS 25255 - 25896 727 ## COG1896 Predicted hydrolases of HD superfamily - Prom 25980 - 26039 8.3 - Term 25986 - 26031 9.1 30 17 Tu 1 . - CDS 26042 - 26176 205 ## - Prom 26207 - 26266 6.9 - Term 26355 - 26428 2.9 31 18 Tu 1 . - CDS 26473 - 26874 566 ## LBA0100 hypothetical protein - Prom 26914 - 26973 7.1 + Prom 26871 - 26930 7.0 32 19 Op 1 . + CDS 27061 - 28167 1014 ## COG0471 Di- and tricarboxylate transporters + Prom 28174 - 28233 7.2 33 19 Op 2 3/0.071 + CDS 28267 - 28827 727 ## COG1704 Uncharacterized conserved protein 34 19 Op 3 . + CDS 28831 - 29727 1036 ## COG0501 Zn-dependent protease with chaperone function + Term 29731 - 29762 3.4 - Term 29712 - 29757 10.1 35 20 Op 1 . - CDS 29770 - 30084 488 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 36 20 Op 2 9/0.000 - CDS 30094 - 30975 1179 ## COG1760 L-serine deaminase 37 20 Op 3 . - CDS 30984 - 31646 738 ## COG1760 L-serine deaminase - Prom 31678 - 31737 5.9 - Term 31738 - 31780 6.1 38 21 Op 1 . - CDS 31832 - 33634 1470 ## COG4907 Predicted membrane protein 39 21 Op 2 5/0.000 - CDS 33653 - 34594 964 ## COG2207 AraC-type DNA-binding domain-containing proteins 40 21 Op 3 . - CDS 34636 - 36108 1690 ## COG0477 Permeases of the major facilitator superfamily - Prom 36132 - 36191 8.8 + Prom 36142 - 36201 5.9 41 22 Op 1 . + CDS 36298 - 37692 1172 ## COG1122 ABC-type cobalt transport system, ATPase component 42 22 Op 2 . + CDS 37658 - 38338 537 ## LJ0072 ABC transporter permease component 43 23 Tu 1 . - CDS 38393 - 38935 588 ## gi|256851731|ref|ZP_05557119.1| predicted protein - Prom 38975 - 39034 7.5 44 24 Tu 1 . - CDS 39053 - 39280 140 ## gi|260661552|ref|ZP_05862464.1| LOW QUALITY PROTEIN: conserved hypothetical protein - Prom 39350 - 39409 5.2 45 25 Tu 1 . - CDS 39482 - 39898 438 ## LCRIS_00802 hypothetical protein - Prom 39944 - 40003 5.4 - Term 39955 - 40006 11.5 46 26 Op 1 . - CDS 40035 - 41606 1703 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 41646 - 41705 2.8 47 26 Op 2 . - CDS 41712 - 42428 654 ## LJ0602 hypothetical protein 48 26 Op 3 . - CDS 42428 - 43165 444 ## LJ0601 hypothetical protein 49 26 Op 4 . - CDS 43168 - 43938 293 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 44037 - 44096 9.1 - Term 44068 - 44105 0.2 50 27 Tu 1 . - CDS 44118 - 44597 519 ## COG1576 Uncharacterized conserved protein - Prom 44673 - 44732 5.7 - Term 45005 - 45049 8.1 51 28 Op 1 3/0.071 - CDS 45064 - 46344 1825 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 52 28 Op 2 4/0.000 - CDS 46423 - 47145 900 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 53 28 Op 3 . - CDS 47231 - 48043 554 ## COG4853 Uncharacterized protein conserved in bacteria 54 28 Op 4 . - CDS 48047 - 49399 1298 ## LCRIS_00075 hypothetical protein 55 28 Op 5 8/0.000 - CDS 49389 - 51251 1712 ## COG5002 Signal transduction histidine kinase 56 28 Op 6 . - CDS 51287 - 52000 862 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 52153 - 52212 79.3 + TRNA 52136 - 52211 85.6 # Lys CTT 0 0 + Prom 52139 - 52198 79.8 57 29 Op 1 . + CDS 52392 - 53606 1238 ## COG0004 Ammonia permease + Term 53614 - 53676 13.4 + Prom 53638 - 53697 18.1 58 29 Op 2 . + CDS 53860 - 55059 450 ## LJ0777 hypothetical protein + Term 55219 - 55251 1.0 + TRNA 55133 - 55208 85.6 # Lys CTT 0 0 + Prom 55135 - 55194 79.2 59 30 Tu 1 . + CDS 55358 - 55588 448 ## COG4892 Predicted heme/steroid binding protein + Term 55600 - 55644 8.2 - Term 55589 - 55633 9.1 60 31 Tu 1 . - CDS 55634 - 57481 1937 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 57522 - 57581 7.7 + Prom 57527 - 57586 6.8 61 32 Tu 1 . + CDS 57614 - 58537 858 ## COG0583 Transcriptional regulator + Term 58538 - 58573 6.0 - Term 58516 - 58571 13.4 62 33 Tu 1 . - CDS 58589 - 59968 1812 ## COG1114 Branched-chain amino acid permeases - Prom 59998 - 60057 8.4 63 34 Op 1 16/0.000 + CDS 60363 - 61418 1110 ## COG0117 Pyrimidine deaminase 64 34 Op 2 15/0.000 + CDS 61411 - 62016 451 ## COG0307 Riboflavin synthase alpha chain 65 34 Op 3 18/0.000 + CDS 62019 - 63194 1199 ## COG0807 GTP cyclohydrolase II 66 34 Op 4 . + CDS 63213 - 63677 635 ## COG0054 Riboflavin synthase beta-chain + Prom 63716 - 63775 7.0 67 35 Tu 1 . + CDS 63845 - 64846 1536 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 64910 - 64954 2.1 + Prom 65111 - 65170 6.3 68 36 Tu 1 . + CDS 65198 - 65917 1007 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Prom 66002 - 66061 8.3 69 37 Tu 1 . + CDS 66170 - 67018 778 ## LCRIS_00111 transcriptional regulator, XRE family + Term 67020 - 67062 4.1 + Prom 67024 - 67083 9.9 70 38 Op 1 3/0.071 + CDS 67265 - 69295 994 ## COG4652 Uncharacterized protein conserved in bacteria 71 38 Op 2 . + CDS 69288 - 69947 242 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 72 39 Tu 1 . - CDS 69932 - 70804 680 ## lhv_1911 hypothetical protein - Prom 70845 - 70904 10.3 + Prom 70807 - 70866 10.9 73 40 Tu 1 . + CDS 70908 - 72164 1050 ## COG0477 Permeases of the major facilitator superfamily + Term 72208 - 72239 2.7 - Term 72192 - 72231 7.0 74 41 Tu 1 . - CDS 72260 - 72586 502 ## gi|256851701|ref|ZP_05557089.1| predicted protein - Prom 72621 - 72680 6.6 - Term 72624 - 72668 7.2 75 42 Tu 1 . - CDS 72693 - 73406 639 ## COG5523 Predicted integral membrane protein - Prom 73426 - 73485 8.0 - Term 73440 - 73480 4.2 76 43 Op 1 . - CDS 73489 - 74346 1121 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 77 43 Op 2 . - CDS 74396 - 77206 2408 ## COG1061 DNA or RNA helicases of superfamily II - Term 77216 - 77245 0.5 78 43 Op 3 . - CDS 77253 - 78080 1036 ## COG0708 Exonuclease III 79 43 Op 4 . - CDS 78149 - 79291 1141 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases - Prom 79450 - 79509 4.1 - Term 79386 - 79425 1.7 80 44 Op 1 . - CDS 79531 - 80337 599 ## lhv_0044 putative esterase 81 44 Op 2 . - CDS 80417 - 81157 668 ## COG0583 Transcriptional regulator + Prom 81092 - 81151 7.6 82 45 Tu 1 . + CDS 81260 - 81658 439 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog 83 46 Op 1 . - CDS 81675 - 82307 612 ## LCABL_20950 hypothetical protein 84 46 Op 2 . - CDS 82309 - 82638 498 ## COG1695 Predicted transcriptional regulators - Prom 82674 - 82733 5.5 - Term 82719 - 82756 6.4 85 47 Op 1 . - CDS 82775 - 84136 1721 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 86 47 Op 2 . - CDS 84163 - 84312 155 ## PEPE_0282 cellobiose-specific PTS system IIA component 87 47 Op 3 . - CDS 84339 - 85220 668 ## gi|256851689|ref|ZP_05557077.1| cellobiose-specific PTS system - Prom 85252 - 85311 6.2 - Term 85306 - 85339 3.1 88 48 Tu 1 . - CDS 85350 - 86495 1477 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 86520 - 86579 8.0 - TRNA 86878 - 86950 84.2 # Thr AGT 0 0 + Prom 86981 - 87040 7.0 89 49 Op 1 . + CDS 87104 - 87811 771 ## COG1285 Uncharacterized membrane protein + Term 87812 - 87858 4.1 + Prom 87820 - 87879 6.5 90 49 Op 2 . + CDS 87904 - 89052 1072 ## LCRIS_00021 hypothetical protein + Term 89056 - 89089 4.0 - Term 89038 - 89082 6.1 91 50 Op 1 16/0.000 - CDS 89085 - 90452 1693 ## COG0305 Replicative DNA helicase 92 50 Op 2 9/0.000 - CDS 90468 - 90920 743 ## PROTEIN SUPPORTED gi|227525172|ref|ZP_03955221.1| 50S ribosomal protein L9 93 50 Op 3 . - CDS 90940 - 92958 751 ## PROTEIN SUPPORTED gi|194246575|ref|YP_002004214.1| 50S ribosomal protein L9 - Prom 92992 - 93051 8.4 - Term 93035 - 93075 7.4 94 51 Op 1 21/0.000 - CDS 93091 - 93327 396 ## PROTEIN SUPPORTED gi|227525170|ref|ZP_03955219.1| 30S ribosomal protein S18 95 51 Op 2 24/0.000 - CDS 93351 - 93866 754 ## COG0629 Single-stranded DNA-binding protein 96 51 Op 3 . - CDS 93903 - 94196 500 ## PROTEIN SUPPORTED gi|227525168|ref|ZP_03955217.1| ribosomal protein S6 - Prom 94278 - 94337 6.0 97 52 Op 1 24/0.000 - CDS 94401 - 96878 3636 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 98 52 Op 2 9/0.000 - CDS 96890 - 98845 2306 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 99 52 Op 3 9/0.000 - CDS 98848 - 99972 947 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 100 52 Op 4 6/0.000 - CDS 99975 - 100190 90 ## COG2501 Uncharacterized conserved protein - Prom 100341 - 100400 10.6 - Term 100337 - 100394 9.4 101 53 Op 1 16/0.000 - CDS 100407 - 101537 1229 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - Prom 101568 - 101627 5.2 - Term 101653 - 101691 2.1 102 53 Op 2 . - CDS 101703 - 103028 1443 ## COG0593 ATPase involved in DNA replication initiation - Prom 103054 - 103113 2.2 + Prom 103397 - 103456 9.0 103 54 Op 1 . + CDS 103536 - 103676 234 ## PROTEIN SUPPORTED gi|227525161|ref|ZP_03955210.1| 50S ribosomal protein L34 + Term 103678 - 103708 -0.5 104 54 Op 2 22/0.000 + CDS 103730 - 104098 349 ## COG0594 RNase P protein component 105 54 Op 3 10/0.000 + CDS 104100 - 104957 922 ## COG0706 Preprotein translocase subunit YidC + Term 104984 - 105038 3.8 + Prom 104966 - 105025 1.5 106 54 Op 4 11/0.000 + CDS 105051 - 106433 1625 ## COG0486 Predicted GTPase 107 54 Op 5 . + CDS 106443 - 108347 2144 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division + Term 108348 - 108384 0.9 + Prom 108447 - 108506 7.8 108 55 Tu 1 . + CDS 108654 - 110459 2166 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 110472 - 110532 8.7 Predicted protein(s) >gi|260196036|gb|ACQN01000031.1| GENE 1 759 - 1235 551 158 aa, chain - ## HITS:1 COG:no KEGG:LJ0094 NR:ns ## KEGG: LJ0094 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 3 158 2 157 158 143 45.0 2e-33 MTSLFYVLFDLLIIGYIIYSWYWQAVVDYPGRYRVSSIIWAVVFVYVSISWNFIDITQAG APVLLAVFLVMSIMDGVSGLGEKRIVISGYVRRTIKYSDLDQITLINAPLTSNKSYVVME LQSKGHVYYIRFAKGMEDVIATLKKHLGNDVGIKIESL >gi|260196036|gb|ACQN01000031.1| GENE 2 1323 - 2018 721 231 aa, chain + ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 5 231 1 229 229 221 48.0 1e-57 MQENMQDLKNDLSKAQHIVFLTGAGVSTHSNIPDYRSKSGIYNGSTIPPEIILSEDTLYH RPNLFYQFVMNNMYFPKAQPNFIHKKIADICNKKGTLITQNIDCLDTKAGNKHVIEFHGN LYDIYCTKCLQTLDFKTYQKSYKHYCGGIIRPNIVLYGEGIDEQKLTKSISNIQKADLII IIGTSFVVYPFAGLLAYRQKDTPVWAINKTKIDAPSIRQITGDALTILKDL >gi|260196036|gb|ACQN01000031.1| GENE 3 1999 - 2361 374 120 aa, chain - ## HITS:1 COG:mll7394 KEGG:ns NR:ns ## COG: mll7394 COG3189 # Protein_GI_number: 13476151 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 3 115 4 114 120 107 48.0 7e-24 MSEIKLVRIYSHEQEKGFRVLVDRLWPRGISKVKADLDLWAKEMGPSNELRKWFNHDPQK FPEFKTKYLAEIKANSETKSFVELVSEKLKKGDVIFLYGAKDPLHNQAVILKEYFTSLLK >gi|260196036|gb|ACQN01000031.1| GENE 4 2415 - 3056 845 213 aa, chain + ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 7 198 3 192 202 150 41.0 2e-36 MNYQNFFQNRPTTEIAQDLLGRTLTYENNGEILGGLIVETEAYLGPKDYAAHSYNGRRSQ ANEGLYCPGGYLYIYAQRQYFFFDIATQERDNPEGVLVRAIEPTLGIETMIKNRAGKTGP LITNGPAKMMQAFGVTSRKWDLHPINQTPFSVDLTSRRPIKNVIAAPRIGVRQDDDWSKR PLRFYVAGNPYVSDMKKTKLEKNNGWELTKNKI >gi|260196036|gb|ACQN01000031.1| GENE 5 3415 - 4977 1492 520 aa, chain + ## HITS:1 COG:SP0453_1 KEGG:ns NR:ns ## COG: SP0453_1 COG0834 # Protein_GI_number: 15900370 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 14 317 19 325 325 258 49.0 2e-68 MASIGFFGNNTQEVQAAKDNGVLRIGMEANYPPYNWTQTTSANGAIPIEGSKTYANGYDV QIAKLIGKKLGKKVVAVKTEWDGLLPALTSGKIDLIIAGMSPTAERRKAINFSEPYRKST FVVITKKTSKYANATSLDDFKGAKLTAQQGTLHYDLIKQLKGAIRENAMKDFAAMRQSLI SGTIDGYVAEDIEAQSFKSVYPDSTSINISKMKGFHVSASDSETSIGVKKGNDKLLAQVN AALATISNKKRDQLMATAVKEQPTTDNDKKTNWFVSTWNTYGSMILAGVGMTLLLALVGT IAGFFIGLVVGVIRTIPTPTSLLNRWLLKVVNFLLSVYVEVFRGTPMMVQAAVIYYGIAQ FWHLNLNRTVAALIIVSINTGAYLAEVIRGGIMATPKGQFEAASALGMSHNQRMWNIILP QAIKNCLPSITNEFIVNIKDTSVLSIISVSELFFVGSTIASQSFEFFQTYLMISAIYLML TFSITRIFNLIEKKLQGPKNYNLMANQVQVGTPEEQGGNK >gi|260196036|gb|ACQN01000031.1| GENE 6 4977 - 5723 283 248 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 21 228 147 352 398 113 35 4e-24 MSENIISVNHLQKSYGDHQVLRDITFDVKKGEIVSIIGPSGGGKSTMLRCINLLEEPTDG EINFNGSDITKPGFNRNDYRSKVGMVFQQFDLFENKNVLQNCMIGQELVLKRSKEEAKKI ALENLKKVGMDPFVDAKPKQLSGGQQQRVAIARAISMNPDVLLFDEPTSALDPEMVGEVL DVMQKLATTGLTMIIVTHEMAFAKHVSDKVIFMSDGVITEQGSPEDIFDHPQAEKTQKFL RNFRKEDI >gi|260196036|gb|ACQN01000031.1| GENE 7 5775 - 6617 595 280 aa, chain - ## HITS:1 COG:no KEGG:lhv_1911 NR:ns ## KEGG: lhv_1911 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 278 8 285 289 167 36.0 3e-40 MKIGELLQKFRLEQGKTRKEFASDVISPSYYCKIEKGSHRVSAEDLIELLKRNNIRLSDF FGMFDSQDLAKQLNLFHEMIVAAHYNGDKDSLKKIPNLIERSLLPEEVKKEQILIARGYL EIDKSSTEPVNWKLREQLREKVFNFPNWNEEKLTLFCNLMPLYDCFSVNLIVQDILKEYK PPFSKELKRILLGIICNNLFLKLKIGEYEGIDMLVTIADAIPSSPDLVFYKNNIIFYKNM ALYKSSNATKYLKNCQKAIEICAWLGMETYAQHMSEFLEG >gi|260196036|gb|ACQN01000031.1| GENE 8 7012 - 8277 335 421 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148990506|ref|ZP_01821647.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae SP6-BS73] # 1 401 1 408 415 133 27 3e-30 MKVFFKNSNFRLFATGSFLSSAGDVLFYLAFMTYASNLKNYSLAISLIAISEAIPKFFTL FGGYLADKTRDKFKSIFNLALVRCILYTIVGLLLTTKMSDWNLVMCIALANFISDTFGTY SSGLVTPLIVAILGKENYAEGSGFANGMSQTISMLARFAGASMLLFMSYSSLAFINAATF LIAGILFALVGKRVNTQKLPLPKSNKLNFFQTLKTSFKQVKKQNNLLTMISILVLLNAVL AVLIPLFTIILATHKQTMLIGNYSFTLAISETIVGSGMILGSLFGPTIFKKTSVFLLAIL ASILALFASLSLFINNLFVILGTFALLTFFVATISLKMNQWLISSVEPSILGSTASLLNT LLLASDPFMTMLLSSITAISNVYIAISVLLCFNVLIIFLIITAYLKNKALKANISLADSE A >gi|260196036|gb|ACQN01000031.1| GENE 9 8349 - 9356 1280 335 aa, chain + ## HITS:1 COG:AF0807 KEGG:ns NR:ns ## COG: AF0807 COG1304 # Protein_GI_number: 11498413 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Archaeoglobus fulgidus # 49 326 93 357 366 121 31.0 2e-27 MTHKQNKVDASSGSSFTEKLEPESPQVWPGPKGMIPVTSGRADDANVHNRNYLDNILAEM RIIDAVKPDLTTEFFGKKYASPINLAAVSHLNKVLPDKRRKPMQEKVQAAKNQNLLNWIG MESNHDYAEIVKNSGDTVRIVKPFAEHEDIINELRFAQDLGAVAVGMDIDHVPGEDGKYD VVDGINLGPISFSDLRRYAHTTNLPFVAKGVLSVQDALKAKDAGASAIVVSHHHGRLPFG VPPLKMLPAIKEALADSDMTIFVDGSLMTGYDVYKAMAMGADGVLVGRAILSELLKSGQE ATEAKIKLLNEQLSQMMLYTGIPDTKSFDSSVLHF >gi|260196036|gb|ACQN01000031.1| GENE 10 9403 - 10674 1190 423 aa, chain - ## HITS:1 COG:CAC1456 KEGG:ns NR:ns ## COG: CAC1456 COG1653 # Protein_GI_number: 15894735 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Clostridium acetobutylicum # 35 422 38 437 439 265 38.0 1e-70 MGKNKAKLIIVTIFLLLLMGSVTYFAKISSEPKTLTIGVYTGSYWDVPQGDSYHMIDYVI KKFKKRYPNVRVIYESGITKTNYRSWLAASLVKGTEPDIFIVPTNTFNILASDGALLDLN GYIRHDKFKTSDFYQAALESGQYYNQQLALPFEVNPSLMVVNTSLLAKAKLKIPNFNWQP TQFELLNKKLRQKDYYGVTENFNWQAAVNSYQGQLFTSDGTKSQLTSNKVMQGLNLITEI VQLNNNVNVTSAMFDQGKVAFSPMTLAQYRTYTSYPYHVTRNSNFDWDVIKMPSMNKKSG TKLANVSFGISSHSRNATLAWQFMKLLVSKDVQTELIKYSQGVSPLKKIAQSTTMKRMLV SEGSNLTTQKLNAILNSGNVEPKFKKYYSVMDDADYQVENGLQSGKLETEVFEMQNHLNE ELK >gi|260196036|gb|ACQN01000031.1| GENE 11 10676 - 11347 767 223 aa, chain - ## HITS:1 COG:CAC1455 KEGG:ns NR:ns ## COG: CAC1455 COG2197 # Protein_GI_number: 15894734 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Clostridium acetobutylicum # 1 219 1 220 225 276 63.0 2e-74 MIKVLIADDQELIRSSIQIILEANPKFKVTATVADGEEVLDAIKKERPDVILMDVRMPKM DGTVCTKYVKSKYPEIKVIILTTFDDDDFIFSALKYGASGYLLKGVSNDQLYQAIETVYQ GGAMINPNIAEKVFKLFSKMAQSNYAIQVDQTESKHFSKNEWRVIQQVGLGLSNKEISAK LYLSEGTVRNYISSILSQLDLRDRTQLAIWAVQTGVTSRDFGE >gi|260196036|gb|ACQN01000031.1| GENE 12 11340 - 12656 1139 438 aa, chain - ## HITS:1 COG:CAC1454 KEGG:ns NR:ns ## COG: CAC1454 COG4585 # Protein_GI_number: 15894733 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 15 431 14 434 441 217 30.0 3e-56 MKGSFKKLIAFRRVLVWLNLIAVLFNSSVFYLASVYIVQSNMSFEFLNKINFLPGAPLTI FWSSTLSYLLLAIVMSYRHYFKKDEEHNSRLLLIEFFLTILVFWNLRFTYNGVILLYFVD LFISLRNKEPSRQLNLWLGMALFILVIFSLTDTVLIENISNIPQLDTYIEFLPLSTKTAV ILISNVLNVVNLIIFMGILVLYAIYLHNREYEVKEKLAKAAQTNLELQNYAALSSHIAED RERKRIARDLHDSVGHALTGVIAGVDAAKVLIDLNPEKAKEQLTKVSQVVKQGLEGIRAA LNKLRPGALENYTLQAALKKMLSEYSELSQMKFDFQYDWGSAEFEKTTEDVIFRIVEESV TNALRHGHASQVSIHFLVNKNYQILIKDNGSGCSKIKPGFGLTQMKERVAIIGGHIEFKS GDGFEVKVDIPKEGVNHD >gi|260196036|gb|ACQN01000031.1| GENE 13 12656 - 13486 776 276 aa, chain - ## HITS:1 COG:CAC1453 KEGG:ns NR:ns ## COG: CAC1453 COG1879 # Protein_GI_number: 15894732 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Clostridium acetobutylicum # 1 276 51 325 325 198 43.0 1e-50 MTMNNSFYQVLNEEVEKRVDARADKLIIRDPALDAQKQVNQINDFIKKGVSAIIINPVDG NNNKLIAILNKAHKKRIKIVVVDSQMADKAHVDATLLSDNYQAGVLCAKALMKKKKRANI LLLEHYSAMSANDRIRGFTDTLFNKNYHVVGKLNTLGQSEYAYPAVLKRLKTQADFDTIM ALNDQAAVGAIAALDSQKVKQVGVYSVDGSANMKQLLLNNQNATATAAQSPKEMGKLAFK LTYDLLAGKSVKSKIKLPVHLITKDNIKNYNVTGWQ >gi|260196036|gb|ACQN01000031.1| GENE 14 13608 - 14396 809 262 aa, chain - ## HITS:1 COG:HI0003 KEGG:ns NR:ns ## COG: HI0003 COG0561 # Protein_GI_number: 16271979 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Haemophilus influenzae # 2 258 4 257 262 125 32.0 8e-29 MRIIFSDIDGTLINDKLEILPRTKESILKEVKKGNLFVPVSARSPLAMQTVIKQLGIKCP LSAFNGALILNEEGVQIYSKPLPLAEAREIVKELNDLTSITWNIYSGLSWLTQKPKTQAL LAEEKIVKLRAKAIDISEIENLKCIHKVLVMGPKNILDELLKTYSQRYNNLYLVKSKDTL LEIVASGVEKADSIKRVSDYYHVEISNTLAFGDNYNDEGMLKTVGKGYLMGNAPEELKKH YPYITADHNHDGIAEVLENLEN >gi|260196036|gb|ACQN01000031.1| GENE 15 14593 - 15030 645 145 aa, chain + ## HITS:1 COG:CAC1457 KEGG:ns NR:ns ## COG: CAC1457 COG2893 # Protein_GI_number: 15894736 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Clostridium acetobutylicum # 1 143 1 141 142 99 38.0 3e-21 MKYLVLVSHGGFADGLKTSLAMFAGDQINRVFALGLEPGTSADTFKEKVNHFFDGHDFSN DDQFVVLADIVGGSPLTTFTSVLSERGFLANSQIFGGTNLTMALTALVSMDAMDKTTLSS TILSEAGNALEEFKVAAPEDDDDEI >gi|260196036|gb|ACQN01000031.1| GENE 16 15043 - 15546 735 167 aa, chain + ## HITS:1 COG:CAC1458 KEGG:ns NR:ns ## COG: CAC1458 COG3444 # Protein_GI_number: 15894737 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 1 167 1 163 164 211 62.0 4e-55 MSVSFVRIDDRMIHGQTVTRWAKEMPCDGIIAINDAASTNPVLKQAYISAAESQGKKGFV WTLDHFKDVQEKVLASSRRYFLITKNPLDMKKILVDMGFVPDDVKTIVVGPGNDRPGAIK LGNNQSFTPEEGEAFEAISKAGYTVKFQLLPDVEIGTWDKYKNKFGF >gi|260196036|gb|ACQN01000031.1| GENE 17 15574 - 16425 1138 283 aa, chain + ## HITS:1 COG:CAC1459 KEGG:ns NR:ns ## COG: CAC1459 COG3715 # Protein_GI_number: 15894738 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Clostridium acetobutylicum # 1 283 1 281 281 312 62.0 4e-85 MTISWLQAIILGIFASLSSMPGMGGTSIGNYTLGRPLVGGLVCGIVLGDIKLGIACGVAM QLVYIALVTPGGTVSADVRAVSYIGIPLAMVAIHSQGLSATGADAANLAKSMGTLVGTVG TVLFYGTATMNLVWQHMGWKDVEKGKFHKLYLVDWAYPWISHICFSFIPTLIMTKLGATA VTALRNALPMDGIPMKTLFTVGAMLPCVGIAILLRQIVNTPVDFIPFLVGFTLAASLKLN LVSVAIVSLIFALLTYQLEMARASKVVAPTTSDTSADDDEEDI >gi|260196036|gb|ACQN01000031.1| GENE 18 16427 - 17263 950 278 aa, chain + ## HITS:1 COG:CAC1460 KEGG:ns NR:ns ## COG: CAC1460 COG3716 # Protein_GI_number: 15894739 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Clostridium acetobutylicum # 3 278 2 277 277 365 63.0 1e-101 MTDRKKISKKTLNKAFHHWYYGHLTCFSQEHMQTFGYLTSMLPIIEELYDKKDDQKEAMK TYTAFFNTEPQLGSIIVGITAGLEEAKANGDAVDGETINGMRAGLMGPIAGIGDSLIVGT LIPILLGIALGMSTGGSPVGAIFYIIVWNLIAYFGMRYLFFRGYEMGDKAVEFLVGAQGS AIRKAIGVVGAMVVGGVAATWVNISTAFELKNASGKTFLSLQKQFDSIYPGLLTVLFILL CWWLMSKKKISAINTMLILVVIAFVGVLVGFFNPGLKY >gi|260196036|gb|ACQN01000031.1| GENE 19 17396 - 17695 406 99 aa, chain + ## HITS:1 COG:no KEGG:LSEI_0563 NR:ns ## KEGG: LSEI_0563 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 93 1 93 110 88 45.0 6e-17 MSREQLKKGYETEIAYQKHMLRNLSYYFELAILVSAIGMVMTYYFWGKNLPVLLLGIFIM VIGLLAMLILATGAIRGRKNLNLVIADYKKKIKTATTKE >gi|260196036|gb|ACQN01000031.1| GENE 20 17720 - 18202 452 160 aa, chain - ## HITS:1 COG:SP2081 KEGG:ns NR:ns ## COG: SP2081 COG3542 # Protein_GI_number: 15901897 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 153 2 147 153 136 49.0 2e-32 MDAKEYIEKLNLTPHPEGGYFKEVYQAKGEYELAEGKRKYFTSIYFLLTPETKSHLHRLN HDEVWYYHDGASLKIHCLYPDGHYQLVKLGKDLANGEQLSFDVPAGVIFGSELAAGEFAL VSCMVAPGFDYQDFELFSQAELIKLYPEQKQMIIDMAYKK >gi|260196036|gb|ACQN01000031.1| GENE 21 18211 - 18381 205 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851753|ref|ZP_05557141.1| ## NR: gi|256851753|ref|ZP_05557141.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 56 1 56 56 90 100.0 3e-17 MDFIKKHVFWVGELVILLACLIWYSVSGHTLPSTLLNSVAITVLAGLIIKLINRKK >gi|260196036|gb|ACQN01000031.1| GENE 22 18562 - 19014 565 150 aa, chain - ## HITS:1 COG:alr4634 KEGG:ns NR:ns ## COG: alr4634 COG0590 # Protein_GI_number: 17232126 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Nostoc sp. PCC 7120 # 1 139 1 135 140 103 40.0 1e-22 MNDEKFMQEAIELSKKAVEHGNEPFGAVLVKDNEVVFTNENQIFTANDPTFHAETGLIRR FCTSTGITDLSEYTLYTSCEPCFMCSGAMVWSKLGRMVYAASNDDLEMTMGKHGSNCSKI VFENYNNAPTVTSGVLREESVAVLKAYFGK >gi|260196036|gb|ACQN01000031.1| GENE 23 19059 - 20450 1511 463 aa, chain - ## HITS:1 COG:SA0132 KEGG:ns NR:ns ## COG: SA0132 COG0477 # Protein_GI_number: 15925841 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 11 448 7 439 450 159 28.0 2e-38 MDKVEKAVDPKIKKLLLSLFVLFIMTNLMVQAFVTASPLIAKSFKITTSLSSMQSTITTL AMGVGSVIFGTLSDYIPARKLLLFGVTLISVGSIIGFAFQSFYVSIIIARALQSLGQATI SSLVIVIISRYISGKAKVRYFAYYTGCFQVAQSAGVLIGGLITAYVPWQVLLLLPLVAIF FLPIILTCAPNDNGGTKQHVDFMGLLMFAVTIILSILFVNSLTMGYLVGILVLLAIFLVY ISKNNKAFITPQFFKQNRSFPRAILITVGIYCGQFAYTFLTTFIVSYGYHQSLSNVSAIF LPAYIASAVAGILGGDKFLKILGQEKTIILGMIMMTAGFLVAGLLINLGSVVLSIGAVLY FVGNTIMYSPLLDTVTGVIPKSEIGRGAGMFDLSINISGSLGVAISGKLISTKAFDGFNF FHANVGLVTFQNIFLVFALIALITIVTYFACQNKFEAAMKANA >gi|260196036|gb|ACQN01000031.1| GENE 24 20465 - 21415 1279 316 aa, chain - ## HITS:1 COG:Cgl1931 KEGG:ns NR:ns ## COG: Cgl1931 COG1957 # Protein_GI_number: 19553181 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Corynebacterium glutamicum # 2 301 3 300 316 298 52.0 1e-80 MKKVILSIDTGIDDAMALAYVLGSKELDLIGIVGTYGNVYTKQGVKNDLALLEMLGRKDI PVYLGNEHAIDKDDFEVSEVSADIHGQNGIGEVEVPAATRQVETGDGVDFIIDSVKKYGK DLTVIATGPMTDLARTLKKYPAFKDEVGQVVIMGGALACTGNVTPYAEANIHQDPLAAKI LFESGTPVIMVGLDVTMRTPISLEDTQKWRDTKTVAGEKYADIVDYYIHIYDKYSPYLHG GSLHDPSATCAAVHPEWFTMLPLHMTVETEGETAGRTIGVMEKLREPNPNVKVCINIEAE KVRQDICNTIHGLFTK >gi|260196036|gb|ACQN01000031.1| GENE 25 21412 - 22323 941 303 aa, chain - ## HITS:1 COG:BH3728 KEGG:ns NR:ns ## COG: BH3728 COG0524 # Protein_GI_number: 15616290 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Bacillus halodurans # 2 303 5 292 294 208 42.0 1e-53 MNICVLGSLNVDLMISTDRLPVKGETVHGNDGDYLLGGKGANQAVAASRMGIETNMIGCI GQDTFGDKILKYLSKEENLETSHIKRLNTFSGIATVFKLPSDNAIVVVPGANNLCDETVL TENQKLITNSDIFLTQLEIPLEIVSAGLKLAKSHGVITVLNPAPYQDLPEEVLTNTDYIT PNDTEFAGLAGKEIHSKAELFTAMLEWQAKHSTRLIVTRGEDGVSYVENGEVVTVPAILT HAVDTTGAGDTFNGIFCYCLAKKMPLEEAIKTARLGASLAVRKVGAQTGMPTLAEIENWR EEE >gi|260196036|gb|ACQN01000031.1| GENE 26 22477 - 23223 800 248 aa, chain - ## HITS:1 COG:SPy1870 KEGG:ns NR:ns ## COG: SPy1870 COG2188 # Protein_GI_number: 15675689 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 17 234 15 234 247 179 43.0 4e-45 MYSQKQRNLDLKRKLRYVKVYEDIYEKIKTGIYPLNSQLPGEMELAKEMNVSRMTLRQAL AFLQDDGIIKTIKGKGNFVIFNPADWSKGLEIVSNPVQKCLMNKITGIELNYRIEPATKY TNEILGRDTGIVVFVDRWYLSEKKPVAYCFSTLPGDNIAKLGLDLNDNEALSDFLENKIY EQASHSEIQLEFSKMGNVHSVRYKISEADAFYLLQEKIYIDGEYPVIHNKFYMPINNAIL NINATEKR >gi|260196036|gb|ACQN01000031.1| GENE 27 23393 - 24277 902 294 aa, chain + ## HITS:1 COG:SA0610 KEGG:ns NR:ns ## COG: SA0610 COG0657 # Protein_GI_number: 15926332 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 40 243 56 271 347 89 31.0 7e-18 MTAFARPDNYDDLRALFKKGDDERDKDLPTHIPEVERIDNLSYGPDSKWNLLDIYLPSQR SGKVPTIISVHGGGWVYGTKETYQFYCMSLAKEGFGVVNFNYRLGPEVAFPGIIDDIDLL MHWLEKNAGNYQLDLSNTFMIGDSAGAQMAAQYLTIMTNDTYRQKFGYNEVNFKIKAAAL NCGAYFINYPDVLDGSMRGYFTEEVMHKYDEILHTENFITQDFPKTYLVTSNQDFLRDCT VRFDGFLTGKEIAHEFHTYGDEDNPKPHDFHCNIKDNVAQNCNHLEMEWFKQFI >gi|260196036|gb|ACQN01000031.1| GENE 28 24341 - 25255 688 304 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00095 NR:ns ## KEGG: LCRIS_00095 # Name: not_defined # Def: restriction endonuclease # Organism: L.crispatus # Pathway: not_defined # 1 304 1 305 305 412 67.0 1e-114 MRFQCESCGLRLASFHFKEKGLINPKLRSICDICLERGLSAEDYANDVIATFAQALLYSY VGQSGEGSHNFIVKSQKQRKAYEAFVQDFDSNEVASGQIARSELNKAIIKSEDGQLDFVP QAGTEFSKNLVGLGLKVNFQLNEVDYINRERIRAKYKYICQYCGRPGRSVDHKDPVSLSH NNELDNLILSCSECNRIKSDMPYDLFMKLNKEVENLNKKLVRYDASLRSLKEEFEQRRRY LAAQVHLRGVVNDPELNDIRKANKRLQDAIDSLESDYDAIRRLRENHFTTGWKLALEAKK DDIV >gi|260196036|gb|ACQN01000031.1| GENE 29 25255 - 25896 727 213 aa, chain - ## HITS:1 COG:lin2634 KEGG:ns NR:ns ## COG: lin2634 COG1896 # Protein_GI_number: 16801696 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Listeria innocua # 1 191 1 190 215 228 58.0 6e-60 MGLHAYLQGLSSLESIDRAPGYFKYQHHSVAAHCFRTAEFAQMMGDIEEVYGDQEVNWKA LYEKSLNHDYTERFIGDIKTPVKYATPQMRKLVGDVEEAMTNEFIKHEIPAEFQEIYRNR LSEAKDDTLEGKILSVCDKLDLMYEAYGEIELGNPNPVYMQMFKESLETIKEFDDLACVK YFIKKILPDLFKGDFAGAVKMQKIAFNILVEEN >gi|260196036|gb|ACQN01000031.1| GENE 30 26042 - 26176 205 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRNIHTGINPHRRPRNAANSKKRVAHAAAVVAYLNKAAKDENK >gi|260196036|gb|ACQN01000031.1| GENE 31 26473 - 26874 566 133 aa, chain - ## HITS:1 COG:no KEGG:LBA0100 NR:ns ## KEGG: LBA0100 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 133 3 135 135 155 55.0 5e-37 MTDKTIQITIKDEAKELIKKHVKPGQVVILTLDDGSNKYSTLGGTCTIGADFQLIVTDQK DPEYPVVMENNAGLEMYTSNNELGFLTDGLLLNARNAVISLYDNSGVIDGAVAVREYTPH ELTAEEVKNGKTC >gi|260196036|gb|ACQN01000031.1| GENE 32 27061 - 28167 1014 368 aa, chain + ## HITS:1 COG:L20481 KEGG:ns NR:ns ## COG: L20481 COG0471 # Protein_GI_number: 15673760 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Lactococcus lactis # 35 364 49 388 392 142 32.0 7e-34 MTVLKNIFKDRIFQISLVITIISLFFARPRIADINFHTLYSVTAMLCLIQIYAYLHVLDI LAYKLTSLADNTRKLTLLFTLLSVLSGMFLGNDITVLTLIPLYLNIAKKYQLPQIYPATL IGMGANIGAAFTPWGNPHNIFIVSNYNVPADVFFAWSTPYLIVSLVILIATCFFLPKDHI PVNQTENIHVNWRMTILTTAVFIFFFFGVFSIVPIYYPMIAALLLALLINPRIYLKIDYA LLLTFTLFFIFISDIQQIPLIVGLIHMTVYSEGSTYLTSIISSQFISNVPSTILVGKFTN FAKALLLGSNIGGFGSVVGSMANMLVLKTFNQHASASKSKFFKHWTILQFSGLAILTIVG WLIIYFNI >gi|260196036|gb|ACQN01000031.1| GENE 33 28267 - 28827 727 186 aa, chain + ## HITS:1 COG:lin0961 KEGG:ns NR:ns ## COG: lin0961 COG1704 # Protein_GI_number: 16800030 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 184 1 185 185 199 55.0 3e-51 MTIWIILAIVIILAIVYITTYNGLQNAKVYTEESWSQIDVQLKRRNDLIPNLVETVKGYA AHEKETLSQIVELRNQLTQVPADDHEEKMKVSNQITDSLKTIFALSEAYPDLKANQEFGK LMEELTNTENKIAYSRQLYNSSAALYDRKLLTFPSNIVANIHHFTKVEYLVTPEAEKEAP KVSFKD >gi|260196036|gb|ACQN01000031.1| GENE 34 28831 - 29727 1036 298 aa, chain + ## HITS:1 COG:SP1283 KEGG:ns NR:ns ## COG: SP1283 COG0501 # Protein_GI_number: 15901143 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Streptococcus pneumoniae TIGR4 # 1 298 1 299 299 295 56.0 9e-80 MLFEQISKNKRKTVLILTIFVLILALVGAAVGYFVASSMVTGIIIALIGTGIYLAIVLHD PAQLVMSMNNAEEIHEQDNPELWHIVEDMAMVARVPMPRVYIIDDDSPNAFATGRDPEHA SVAVTHGLLEMMNREELEGVLGHELSHVRNYDILVSTIAIAMLTVITLLTDFTSRYLFWF GGSRRERDDDDNDNKNLEILKVVLFVITILLAPLAATLINLALSRNREYLADAGSVELTR NPHGLISALKKIESSQPMENVSSSSRALYIEDPVKKEHGSLFDTHPPTSERIKRLENM >gi|260196036|gb|ACQN01000031.1| GENE 35 29770 - 30084 488 104 aa, chain - ## HITS:1 COG:lin2362 KEGG:ns NR:ns ## COG: lin2362 COG2151 # Protein_GI_number: 16801425 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Listeria innocua # 5 103 3 101 102 105 50.0 3e-23 MRTPEVIKDEIIKQLATVVDPELGIDIVNMGFVYSIDLDEDGICLVELTLEILGCPLEFV LAKMIKEVLVKVPEVKNVDVEFRTEPRWTKERMSDYAKFALGVS >gi|260196036|gb|ACQN01000031.1| GENE 36 30094 - 30975 1179 293 aa, chain - ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 290 1 290 299 305 60.0 6e-83 MFDSVKEIVEAANNTGKPISELIIEEEIKTSGLSREEIWKKMRFNLQTMQNAVKRGESGK GVLSSTGLTGGEAVKVAKYRQTHRTLSGDTMMGAVQAAMATNEVNAALGIICATPTAGSS GTLPGVIASLEKRLNLDEDALVRFLFTAAGFGLVIANHAGIAGATGGCQAEVGSASAMGA AAAVEAAGGTPQQCAEALSIAISNLLGLVCDPIAGLVEVPCVKRNAIGAANALVSADLAL AGCASVIPADECIMALDKVGKSMPAALRETGIGGLAGTPTGQAIKAKIFGKDA >gi|260196036|gb|ACQN01000031.1| GENE 37 30984 - 31646 738 220 aa, chain - ## HITS:1 COG:lin1927 KEGG:ns NR:ns ## COG: lin1927 COG1760 # Protein_GI_number: 16800993 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Listeria innocua # 4 211 3 208 220 151 42.0 9e-37 MANYRSVFDIIGPVMVGPSSSHTAGAVAIGNAARLIFQKTPKKVVVHYYESFAKTHRGHG TDFAIAGGLLGMTPDDERILNAPKLLAEAGIKLRFVEEDGPSPINHPNTAIISMSDDEKQ ITVGGCSIGGGIIEIRLIEFQGNKMNLTGPLPMILYLVHGKNNPLVNELNEILEQEASLQ KVQKWPIGDSELFEFDIAKYLSPKRFSELQEKFKGIIYLK >gi|260196036|gb|ACQN01000031.1| GENE 38 31832 - 33634 1470 600 aa, chain - ## HITS:1 COG:FN1127 KEGG:ns NR:ns ## COG: FN1127 COG4907 # Protein_GI_number: 19704462 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 36 542 27 537 606 95 21.0 2e-19 MKKIINLLLMLGVITLLFSITGQRVLADSPSYDITNVKVASHIQADGSLTIERKITYKFD SSARGVYYRQNLLKNQKLLNPQVKIINQGVTKTIINNSSGSNDTYQLSYKNGYQFKVFHK VKAGNRFTIVYRYKITNAIKNWQDTAELNFKIIGNGWETDLDHVEAEVVFPSKVSMLKAW AHGDLSGRIQVLPDKGRIIMTADNVAGNTGIEVHAIFPTSVTADNKNVSNEKRKQFILKQ EKQLAEEANRRRKRAGYILIFSIIVSILAIIASLFVKKQGSKPKKMSALAHSYEIPEVSP IMAQILDNTSKPDTQALMALITELTGKHKLEIREEKIGKIIKKSSYRIFLKDQTALSQQP LLRFLFDEVGNGASFSTYELKKFDDPKELSEKYQAWRNQYYKQAYQRNYFSNKIREKKQN IVALAGILVAINAIIIFLSCMLSIISWQLLVLAIILAILNGISWLVAASRLGIYTEKGAE ITNQVRSFKKMLENIGNFKMRDIGELILWEDIMPYAVALGLSEKVLKQLRLEFSESELAT SDLVVYQALYLNNSSSNNFEHSFTSAFNAGSSISSDSGSSGGFSSGSSGGFGGGSGGGAF >gi|260196036|gb|ACQN01000031.1| GENE 39 33653 - 34594 964 313 aa, chain - ## HITS:1 COG:PA3220 KEGG:ns NR:ns ## COG: PA3220 COG2207 # Protein_GI_number: 15598416 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Pseudomonas aeruginosa # 206 303 150 248 254 66 34.0 6e-11 MAIFTLDQYLKGVIKNTKQNTNDLKLDSKNKDQKDFAIYVENHNGGIHRYHSQEEWLFVE NGTCSIKFHNQILDLTAGNLVLIKAGQAFEIKEQTSETVVVKMCVKAIYNFEKELQNYLS LDDKENEILVTVKNLLAEEGYLFIKTSRLMKQSQLIENIINEYLNGDLFMAPMMAGTFSQ LLALSLRMQTFNRTAGKTKKVNFIGSDLDRYIDLHFADIKLAEAAEYFGFNQNYFSNLVK QKTGKSFVEHVDERRMQEARELLAQPNLSLKEIISRVGYSSKSFFYKKFSEYYGTTPALM REELFRQANINLK >gi|260196036|gb|ACQN01000031.1| GENE 40 34636 - 36108 1690 490 aa, chain - ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 478 1 477 486 244 32.0 2e-64 MNKKRITIVTMALLLSNAMSGLDNTIINTALPRIIADLKGIEYMGWMVSVFLLGTAVATP LWSKLGERTSNKLAYQLAALTFLLGALFQGMAPNMFILLLARLICGLGNGGMVSIPYIIY SDLYPNPAKRMRTLGLVSAFYSSATIMGPMLGGWIVDTLSWRWVFYLNIPVALISIILVQ IYFIDEKVERPKKKVDLGGAITLTLGLIIMLIGVDLIGETQLGTLLILFAAALIFFGMLI IIEKRAEDPVIPGRLFKNSDLNIDFALFVLIWAAMMAFSVYAPMWAQGLLATSAFIGGAT QIPGAFTDLCASLSVAKMREHWSAGQVVLIGIGSLLIGYFIMMFGPITMPYFLIILAGMF QGVGNGIVFNELQVKVQQDVEKQDVPVATSFSFLIRMIASAVAASVFGLIMNASLFKGVR ESRGSITINMLNHLSDAETSKLLPQALLPQMRQILYSGIHNIMIVATILIIASFFIGYYA RQKEKHSISK >gi|260196036|gb|ACQN01000031.1| GENE 41 36298 - 37692 1172 464 aa, chain + ## HITS:1 COG:SP0720 KEGG:ns NR:ns ## COG: SP0720 COG1122 # Protein_GI_number: 15900617 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 78 456 77 441 461 203 33.0 6e-52 MKGGFILTSIMLSHVNFAYDKQSIIQNLSINFAPGKIHLLIGENGAGKSTLLKIMAGLLP KFGGKLTGKISIDAKTNMMFQDPELQFALPTAYNELIFTMENLKVSRETYKDKINHVAKF TGISHLLKQPIAQLSGGEKQKVALAILLAMDSDLLLLDEPFANCDLASRRNILIKLKQLV KAGKTVIIVDHDLPDYETLADEIWLFKDKQLHPLTNEERTKLFKQLKQPYKVKFSLPQNQ KSIFNFSNTVIKQHLPLIEVSTQKIYQGKITLLTGENGAGKTTLFKTLTKMHPYYGNLTY KSKEIKGWHLKPYLASVAQVFQEANNQFLEITVQEELTLSQKKQVNPYFTKEKLAKSLEK LSLNKLLDHSVYTLSGGQKKKLQILLMLLNNHDVLLLDEPLAGLDTASRQIIINLLSDIQ KQTNQTFIIISHQICELTPICDYHLVLAKKGLTYVQNGGENLES >gi|260196036|gb|ACQN01000031.1| GENE 42 37658 - 38338 537 226 aa, chain + ## HITS:1 COG:no KEGG:LJ0072 NR:ns ## KEGG: LJ0072 # Name: not_defined # Def: ABC transporter permease component # Organism: L.johnsonii # Pathway: ABC transporters [PATH:ljo02010] # 9 222 1 215 217 164 47.0 2e-39 MFKTEEKILNPSFKFLLLLIIALVISATNSVELNLIVIFACFIYLIKYHLKLTQFFKLLL YPALAAICAFVTIAYFSKNSVYDATSLASRIYVYVFTGACLTLTTDMTTLARSFEQNLHL PAKFAYGFLAAVNILPKMKRQIKQIRYAGLMRQTPLSLFSPRLYFKALLAALANSELLAQ AMTSHGFNEDKKRSVLQVVQVRFSDYLWFGGILVIFIVLVFFSYFL >gi|260196036|gb|ACQN01000031.1| GENE 43 38393 - 38935 588 180 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851731|ref|ZP_05557119.1| ## NR: gi|256851731|ref|ZP_05557119.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 180 1 180 180 325 100.0 6e-88 MLFRLNNETKSENVRNLKVNKHTNSQSSKQQYEISSVYKAENVEETISESSSSDDIETNY GKIGSFDVPKEFQGTWYMALENGKIIDLRISEHTINEDLLFIKDPNFQVASDDPRVKDFP SDIQSWYDTKLVYYKGDKVISLVHWLLSGTDSFNYRLHNEDGNQVIVWVHGPLSERCVFF >gi|260196036|gb|ACQN01000031.1| GENE 44 39053 - 39280 140 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260661552|ref|ZP_05862464.1| ## NR: gi|260661552|ref|ZP_05862464.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Lactobacillus jensenii 115-3-CHN] # 1 75 68 142 142 108 100.0 2e-22 MRTAELRMKEETAIAEKRGREKGDKNTVQSFVNFFKRSKAQMSEEEIFSAIKDSVSSNFS LSDSDIKAIIHQNMK >gi|260196036|gb|ACQN01000031.1| GENE 45 39482 - 39898 438 138 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 7 138 11 143 293 122 45.0 3e-27 MLEDNKYYGFTNDEIFGSIMQNKRFCKAIIQAALPDVNVVSVESIDAQKELGTKSDKRSK SVRLDIAVKDQSGNLYDCEMQVNNNHDIGPRMRYYQSSMDRDTLDRGEPYTSLSRTYLIF LCAFDPFGKGKLRYSFHL >gi|260196036|gb|ACQN01000031.1| GENE 46 40035 - 41606 1703 523 aa, chain - ## HITS:1 COG:L162870 KEGG:ns NR:ns ## COG: L162870 COG1132 # Protein_GI_number: 15673504 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Lactococcus lactis # 221 522 223 526 529 134 29.0 5e-31 MTLKYAHPFKLFMYLILAIIKSFEMVFVAYTFKLFIDYANKPKGSLLNIVLAAFGVLVLL GIAGVLYQLLYANIVTEINLNIKAKAAKYLLVNRNSNSEIDVSFMTNDLKQLETNRIEAQ LDIIMNAIQFISAFVSALLGSWILSLVFLFAAFAPALLQNIFGPMIEKSSDVWEKENRKY TNTVDDSLTIAPMAQLYDVEPSLMHRLYKAAKNMELALRKTNSVKQIANELTMTLAFICS MLLPFAIGVYLVVNGQITLGTIMMIAQLANNFINPIVGIFGDINNVKSTNPIWNKFLAIP ELTEESTESATNKFTNLKIQNAAIKINDKQIFSNVNLDVKSGEKILLDAPSGWGKSTLLN VIIGNYKLTTGDYLFNGKEENGNWNQLHQYFSFINQKPIILDDTLGFNITLGRKVSAEVL DNAITKAGLKELVADKGLDYQVGKNGKNLSGGQNQRVEIARAIIANRPILIADEATSALD QDLSEKIHQTILEDFPGTVIEVAHKVSEKEKAKFTQVVELAKA >gi|260196036|gb|ACQN01000031.1| GENE 47 41712 - 42428 654 238 aa, chain - ## HITS:1 COG:no KEGG:LJ0602 NR:ns ## KEGG: LJ0602 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 4 223 5 224 239 195 48.0 1e-48 MENYKVTFSTIGDFENLRTIIVNYLILPVVSLVMFLLIIYGTEQDFRRVLIGSLVTTAII TMIGIITGSYCYDQNVGTSEEIISIKPKFSQYWLPKIVIASVAAALELLILALIALTSMG MLAYAGKLASGFLIMIVFASLLAYICALAGDQRENPYWLTNIATASLVLVAGVIIPVSQY PTWLRVVAEVFPVSDLLDWILAGSYFNQALAVALFKLGLWFILAGGMRLYHNWYVRNR >gi|260196036|gb|ACQN01000031.1| GENE 48 42428 - 43165 444 245 aa, chain - ## HITS:1 COG:no KEGG:LJ0601 NR:ns ## KEGG: LJ0601 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 2 245 1 244 244 236 61.0 6e-61 MLRFINLVKFQLKLYVKNSYFVMLVITTTATMELYQYLAHYVNQTYTGQEWLIAGIMGTW ASCTTSAGALAYQRWQGTLPYLLNSGISRELVLLATLSPAAIYGLVAFPLAGVLALVLGM PVANLSWTLGLGIVILWLTATVLSYFISLLFILTRNAMAYEELVLTPILLLSGLLTIPSF ALPYLKPVQILSPLTLPIKLIYQEKLNLELIITYLLVTIFFVYISKILTEVVIKRAFKEN RLGVF >gi|260196036|gb|ACQN01000031.1| GENE 49 43168 - 43938 293 256 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 218 1 212 311 117 34 2e-25 MNKILMRTESIKRYFKGKNKTTFKAVDGISFTLHKGEVISFVGPNGAGKTTLIRSISGYL VPTSGKIEIMGLNLAKKLREARQKMGVVFGGDRGFYNSASAYDNLAFFARLLNVKEKDIK NNVLNALEIVNLLDVKDKYVGSFSKGMMQRLHIARGLVNQPEILMLDEPTAGLDVESVYT VRELIKNLKETGHGIILTSHDMADIETLADTIYLIGGGKLVFSGNTDQIKELAGVDANTS LEKAYLAIAPKLKRRL >gi|260196036|gb|ACQN01000031.1| GENE 50 44118 - 44597 519 159 aa, chain - ## HITS:1 COG:BH4007 KEGG:ns NR:ns ## COG: BH4007 COG1576 # Protein_GI_number: 15616569 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 159 1 159 159 190 62.0 1e-48 MNIKIVCVGKLKEKYFKDGIAEYAKRLSRFAKFKIVEVPDEKAPENMSEAEQEHVKEVEG EKILSKIKDKEYVIVTAIKGRERASEELAKEIADLGTYGHSDITFVIGGSLGTSPAVNKR ADDLLSFGKLTMPHQLMRLVLTEQIYRAFMINSGSPYHK >gi|260196036|gb|ACQN01000031.1| GENE 51 45064 - 46344 1825 426 aa, chain - ## HITS:1 COG:SP2239 KEGG:ns NR:ns ## COG: SP2239 COG0265 # Protein_GI_number: 15902042 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Streptococcus pneumoniae TIGR4 # 77 426 49 387 393 232 47.0 1e-60 MTEDKNQNIQNKSQNQASRSNLNTADKSQNKLLTKAAIVGVVAGLLGGGVSYVGLEQYSN YAGSSSAQTSISSSSASISKTSAKNSGTMTSAYNKVKGAVVSVINLKKNSTRKSNSIYDL FGGSDDDSSSSSSSSTTKYTTYSEGSGVIYLKSNGKGYIVTNNHVISGSDKVQVVLASGK TVDAKVVGKDSTSDLAVLSIDAKYVTQTASFGDSKSLITGQTVIAVGSPMGSEYASSVTQ GIISAPSRTITTSSNQQTVIQTDAAINPGNSGGPLVNSAGQVIGINSMKLSQSTDGTSVE GMGFAIPSNEVVTIINQLVKNGKVTRPQLGIKVISLSELSSAYKEQLGIKTNLKSGIYVA SVTKNSAASAAGMKSGDIITKVDGTSVSDVVSLHEILYKHKIGDKVTVTVDRNGKTVNLD VTLKSN >gi|260196036|gb|ACQN01000031.1| GENE 52 46423 - 47145 900 240 aa, chain - ## HITS:1 COG:L582 KEGG:ns NR:ns ## COG: L582 COG1235 # Protein_GI_number: 15672377 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Lactococcus lactis # 1 240 32 270 270 216 48.0 2e-56 MDAGLSGKKIKDLLAQVGVDIKDIDMAFLSHDHSDHSKGLGVLMRRYPQINAFANSGTWK YLIDENKIGKLPVEQINAIEPGQVRTFDDLEIQAFATSHDAAQPQYYVFSSAGKRIAFLT DTGYVSEKVRDVIKDSDAYMLEFNYDNELLRNGPYSWQLKQRIMSDYGHLSNEQASEVFE DVLTAKTKHIFLTHRSQHNNTLRLAHDTLVNNLARDEVDYNPQLKIIDTDPDIPTDLIKI >gi|260196036|gb|ACQN01000031.1| GENE 53 47231 - 48043 554 270 aa, chain - ## HITS:1 COG:lin0318 KEGG:ns NR:ns ## COG: lin0318 COG4853 # Protein_GI_number: 16799395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 269 1 264 279 68 25.0 1e-11 MDHRRIEWLFFVIFFAISVFLGIELWRTPIQLSGTSSDPNTTTNISDEIKADNIDLPSLS EDTASGYYLAASDQNYFKNVKNLRNVNTNYSTTDKTFYAVLQKAVNLSTDSNKALAQVKA FKNNSHYVPFGKQYVYVDELSDDNNYVFVQNSKFGKVYDASAELIIKVQKHQIVSYQQGY LGKLSAVRELQSTISSWKAIQNLYVYRELTNNSKVLWIKLEYSKLTEVRNSIILLPTWVV EIENKTTKMSSIKRVNAFTGQVIQNNNVTD >gi|260196036|gb|ACQN01000031.1| GENE 54 48047 - 49399 1298 450 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00075 NR:ns ## KEGG: LCRIS_00075 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 12 442 15 449 453 375 49.0 1e-102 MKSKNRAIDIALHIATGAVIITSIVLWIFILTSDQRFSGLNQSTDTDTTHVKNSKSVKDA YLPTEVFGYRNNQLYQLYDSDKNLPLVFSKEFNNAKIESIKPIFNTKKDYQKFLTNKTYL QLTYPDQITFGIFSSNVSKYKNSEFNRIFIAQKDGKFKLYAGNDLNFRIYEVSLKNGNFA KLLKYAQKAESKTAVSLIRLSEGYEVSYKNDLTVNVYSYLISNPSDSYFVSRLLGTSGVS SKTTGNVTTYTAGLYNHLEVPKSNSKDYHNYTYINYQKSSIPNPNTRLSDSVTYVHKLGL VEQDLRFFDAEGSSVVYTNYIEGYPVFIKTQGPQIQIRYSTDNITIKFNSTNLQIPVPFD GRTVKIPKTSTVIKTLQAKGIAKSDIQRMTIGFELVRDSAHDSLVDLIPTYYIKIYNHWL SLSEWQNANLAKYRTSTTSSANGLNVTREE >gi|260196036|gb|ACQN01000031.1| GENE 55 49389 - 51251 1712 620 aa, chain - ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 4 618 1 610 610 489 43.0 1e-138 MVKMKKIKSILNSLNTKIAVVFMLMILATIEIIGAYFTRQLEQSTIESFQTSIQIPTIIT NSLATQLSKNTKKADEQLSQIVSNYNNSAISEIIVVDNKDVIRAVSNLNDKSRVGQRATN VGIKQVTSTGRQITWIDSNNNGSNMVQITPLTIGTGTNSTLGAIYVRANMQGVFDNLRNI SYMFLTASFAASILSAILALFISRAITKPIEEMRMQALQVADGDYSGQVKIYSNDELGQL AEAFNTLSIRVERSQEQSESERRRLDSVLSHMTDGVIATDRHGNVIILNQMALSFLDIKE KDAVSKPITKILGLDDDVSAQELIGNQQEMMITVNEGTPDEMILHANFSLIRRVTGFVSG AVCVLHDVTEQQKNENEQRQFVSNVSHELRTPLTSLRAYIEALNDGAWKDPEIAPQFLEV TQEETERMIRMINDLLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQ KKYSIKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQNQIILSIS DQGLGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGS TFYISLPFEPMSEEDDWDEV >gi|260196036|gb|ACQN01000031.1| GENE 56 51287 - 52000 862 237 aa, chain - ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 237 4 237 237 329 73.0 2e-90 MPKKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEINPDLMILDLMLPKKD GLEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR DIVQKQVDENENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMT REHLLQTAWGYDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYVKDPNEE >gi|260196036|gb|ACQN01000031.1| GENE 57 52392 - 53606 1238 404 aa, chain + ## HITS:1 COG:CAC0682 KEGG:ns NR:ns ## COG: CAC0682 COG0004 # Protein_GI_number: 15893970 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Clostridium acetobutylicum # 1 399 1 399 405 285 44.0 1e-76 MNEVDTSFIIFSSILVLFMTPGLAFFYGGLVSKKNVVNTMVSVFFITGLAILLWLICGYS LAFSGNIWGIIGNGQHFFFQNLNFEKTTTGGIPVGLYSLFQMMFAIITPALFIGAVVGRI NFKFLFFFIIFWSIFIYYPMVHMVWSPNGLLSKLGALDFAGGTVVHINAGITALILAIFV GPRTKKEPHHYNLAWVLLGTAILWIGWYGFNAGSALAVNSSSVLAILTTTMAAASAMATW SILELIHNKKVTLVGTCTGVICGLVAVTPAAGYVSSMGAFWIGIIAAGLSFSFVTFIKPK LRIDDTLDAFGCHGISGIWGSIATGLFASKSANSNLTLNGLFYGGGLRLFLIQLLVTIIT IIFVGLTATTITILLKKFVTIRVTKEQEASGLDLSQHGEIIEQN >gi|260196036|gb|ACQN01000031.1| GENE 58 53860 - 55059 450 399 aa, chain + ## HITS:1 COG:no KEGG:LJ0777 NR:ns ## KEGG: LJ0777 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 397 1 410 410 91 27.0 5e-17 MKTLNSSLHPVILFQTIISLLVEFIFIFPTANRQFKTLNLFNISLSIVLLIALVLAILSK RLHFLSWSNTVVIIIFPAFNLFLIPIFFRTMNGFLKLGIFSELVFILSLFLINIPLFKLE LDTLETPVIRFLFIFVFYTAARYSPLYYPTYLPKILNQFLDTYFWFSIFMLFSWVLIFNA WSNTWKFNIKVLPNNNYQIWAVIILVFYMIWFSFFDQFINLGTSWSEIFGSWSYPISQLH FSWYNLMYALFTGILEESFRWANLQILLPYFKNKFLPILGPILISAFFFGIYHYTLSYTL NLNSILYVIDAFVMGLVLAGIYLYTGKLYITILFHAAIDLVGFNLGSLVNYNLGLLDYPQ QLVLIILINMIFFIFLFTGKRRKGIAINVSKLIKKSNLT >gi|260196036|gb|ACQN01000031.1| GENE 59 55358 - 55588 448 76 aa, chain + ## HITS:1 COG:CAP0144 KEGG:ns NR:ns ## COG: CAP0144 COG4892 # Protein_GI_number: 15004847 # Func_class: R General function prediction only # Function: Predicted heme/steroid binding protein # Organism: Clostridium acetobutylicum # 2 74 64 137 143 72 47.0 1e-13 MKEFTREELAKFDGQNGNKAYVAVNGVVYDVTGNSHWTNGQHHGVLAGKDVTEALSHSPH GDSVLAGLEKVGTLKD >gi|260196036|gb|ACQN01000031.1| GENE 60 55634 - 57481 1937 615 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 68 611 1 477 484 221 33.0 3e-57 MKAGKYKVRAKGHGASFMPMEVTLSDNKIEKIEVDAQGETKGVADEVFHRLPEEIVKNQT LNVDAVSGATISSHGVIDGISQAIDEAGGDSNEWKKRPKPSNHKQADSELTADVLIIGAG GAGLSAAARAIELGKKVIILEKYPQIGGNTARAGGPMNAAEPDWQKNFECLPGEKETLKQ LIEMPISEIDEEYQADFKKLQKQIQKYLDSDANYLFDSVLLHEIQTYLGGKRVDLKGHEI HGKYELVTTLVNNVLDSVKWLEKLGVKFDKDNVTMPVGALWRRGHKPVEPMGYAFIHVLG DWVKAHGGKILTETKAEKLLISDGRVKGAIAKRSDSSQVTVHAKATMLTAGGFGANTQMC QKYNTYWKEIADDIATTNSPAITGDGIKLGLAAGAGLVGMGFIQLMPVSDPVTGELFTGL QTPPENYIMVNQKGERFVNEYAERDTLASAAIAQGGLFYLIADDKIKETAYNTSQEAIDA QVKAGTLYKTNTLEELAKETGMNPTTLVNSIKKYNSYVEQGHDPEFGKSVFNLKCEKAPF YATPRKPAIHHTMGGLVIDTKAHVLNDDNKIIQGLYSAGENAGGLHAGNRLGGNSLADIF TFGRIAAETIADEIK >gi|260196036|gb|ACQN01000031.1| GENE 61 57614 - 58537 858 307 aa, chain + ## HITS:1 COG:BS_yybE KEGG:ns NR:ns ## COG: BS_yybE COG0583 # Protein_GI_number: 16081119 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 21 248 5 225 278 99 30.0 1e-20 MNDPETVLHYLDVLLKESNFTKAARELYISQPYLTQTLKRIEKKLGVQILNRNIPFSLTE AGTKYYKYLEKSVSRKNKLEQDLLKYSHPDREIIKITVLESLGTFLLPTLLPSFLKENSN ISIQIIECSPRRSENLLLSEEVDCYLGQTPKSLSKGILPYLNGSETYYVVIPQSSPYFTP GKFILPQDSLSLKELLKEPLILSTGGSAIRHQVNGLLQKYKITPNIILESKSVLTATGLS INGLGITISSASILKRYNQVPINLLPLESNLISINYFLAVKANRKLTPGLKKLISHFNKL NLNEDIK >gi|260196036|gb|ACQN01000031.1| GENE 62 58589 - 59968 1812 459 aa, chain - ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 7 455 1 448 449 311 42.0 2e-84 MDELKKVERKLTKKDYFVVSSMLFALFFGAGNLIFPLHLGQLAGHNWFIATLGFLITGVV LPLLSIMAIALTRSEGVYDIGLPLGAGFAVTFMALIHATIGPFFGTPRTATVSFTVGIAP FVGKGNEQLALLIYSALFFGTACWISYNEKDILNRLGKVLNPIFLLLLFLVFLVAMINPL GSASAGHATSAYSNTGSAFLNGFLEGYNTMDALAGLAFGITVVTAIKQLGKKEDRSVAVV TARSGILGMGAVAVIYFFLILIGAMSLGKFTLSADGGVAFSQIVQHYAGSVGQAILATLM TITCLTTAVGLVAAFGQDFHKHFPRFSYRFWLFMSSFASFLIANVGLNEIIAWSTPFLMF LYPLSMVLIVLSVMAPIINKDSTVYFFTVLFTVPPALLDFINALPDIARNQAWAQALLKV RSILPLSDVGMSWLLPALIGLMIGLVLFFVKKKQVSKQA >gi|260196036|gb|ACQN01000031.1| GENE 63 60363 - 61418 1110 351 aa, chain + ## HITS:1 COG:L0163_1 KEGG:ns NR:ns ## COG: L0163_1 COG0117 # Protein_GI_number: 15672975 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine deaminase # Organism: Lactococcus lactis # 1 144 1 142 142 145 51.0 1e-34 MNKDEQFMALAINSASKGRYHTWTNPMVGAVVVKDGKVLATGYHHKYGDVHAERDAISKL TPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHGLVTGKGIKKLRSH NISVTTGVLTQEAKKLNKHYNFFYEHKMPYICLKQALSLDHKCSYPDKRIQITGKAAYEQ VHRERADYQAIMIGSSTALIDNPTLLTSVKQDHPPIRIVLDRRGRLLNKNLALFSDKHAQ TWLFTQNTKLTKFPYPPHIKVFLLHSGSLREVLQLLTQNNVQSIYVEGGPTLMKTFIEEK LAQELITYFSPTFLGNNALDGFEITENINLIKPDYQVLDKDIRISGRIDYV >gi|260196036|gb|ACQN01000031.1| GENE 64 61411 - 62016 451 201 aa, chain + ## HITS:1 COG:Cgl1558 KEGG:ns NR:ns ## COG: Cgl1558 COG0307 # Protein_GI_number: 19552808 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Corynebacterium glutamicum # 1 192 1 191 211 152 44.0 3e-37 MFSGLVTGDATIATIKKDTQTITMTIKTSTSNLKGLKVGDSIAVNGCCLTVESFTETKFV VTMMPQTFKKTTFKNSKIGDQVNIERSLQVTSRLEGHIVTGHIDDVVSLIKKQQNENAIE LFFKLPDRLTAQVVPQGSIAINGTSLTVMDINKNIFSVGLIPHTQENTNLTQLAVGDQVN VETDILGKYVAKNLILFQGAK >gi|260196036|gb|ACQN01000031.1| GENE 65 62019 - 63194 1199 391 aa, chain + ## HITS:1 COG:BH1556_2 KEGG:ns NR:ns ## COG: BH1556_2 COG0807 # Protein_GI_number: 15614119 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Bacillus halodurans # 209 388 7 192 197 217 57.0 4e-56 MDVKKIQAAIQWMKQGGLVIVADDEDRESEGDIIGLGSKVTPQKINFITQTARGLLCTSI GRSIAERLNLTPMAQNNTDPYGTAFTVSVDYKTTTTGISAFDRATTIKALADSTTKADDF FKPGHTFPLVAKDGGVLERNGHTEASITLARLAGEAEVAYICEVMDADGHMARRPRLKEI AAEYNLPFLTIAELQEYVKNPTSKNNQFVDLPTVYGNFKIKAYVGENLALVKGPIDPNKP VLVRLHSECMTGDVFGSKRCDCGEQLHKAMQKIDHEGGILIYLRQEGRGIGLSNKLKAYA LQDQGRDTYEANKILGFEPDERKYNIAKEILTDLGISKIRLLTNNPDKVTQLTKYGIEVT ERVPLEIPANEINKFYLQTKRDKFHHLIMGK >gi|260196036|gb|ACQN01000031.1| GENE 66 63213 - 63677 635 154 aa, chain + ## HITS:1 COG:L0166 KEGG:ns NR:ns ## COG: L0166 COG0054 # Protein_GI_number: 15672978 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Lactococcus lactis # 2 152 3 153 154 137 47.0 1e-32 MIKQGDFINVHGKVAIVASQFNETVTKNLVDGATATLKKFGIKSEDIDIYWVPGAFEIGF TAKKVLKTNKYTGIMTLGAVIKGETDHYTMIINNVTSAIIQLNLKGQIPITFGMLTTENI EQAMQRAGLKAGNEGSATAQTLLEMMSLNEQITK >gi|260196036|gb|ACQN01000031.1| GENE 67 63845 - 64846 1536 333 aa, chain + ## HITS:1 COG:SA2346 KEGG:ns NR:ns ## COG: SA2346 COG1052 # Protein_GI_number: 15928138 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 315 1 316 332 221 38.0 2e-57 MTKIFAYAIRKDEEPFLNEWKEAHKDVEVDYTDQLLTPETAKLAKGADGVVVYQQLDYTA ETLQALADAGVTKMSLRNVGVDNIDMDKAKELGFEITNVPVYSPNAIAEHAAIQAARVLR QDKVTDLKMAKRDLRWAPNIGREVRDQVVGVVGTGHIGQVFMKIMEGFGAKVIAFDIFHN PELEKEGYYVDSLDELYKKADVISLHVPDVPANVHMINDDSIKEMKDGVVIVNVSRGPLV DTDAIIRGLDSGKVFGFVMDTYEGEVGVFNEDWKGKEFPDARLADLIDRPNVLVTPHTAF YTTHAVRNMVVKAFDNNYAMVEGKEPETPVKLG >gi|260196036|gb|ACQN01000031.1| GENE 68 65198 - 65917 1007 239 aa, chain + ## HITS:1 COG:lin1131 KEGG:ns NR:ns ## COG: lin1131 COG0580 # Protein_GI_number: 16800200 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 1 235 1 234 234 225 53.0 6e-59 MNSFIGEFVGTMVLLVLGIGIGAGSNLKGSIAKGASWHHITMTWGLAITFAVYVAGSLGS KAHLNPAVTLSFATFGLFPWKDVLPYITAQFLGAFAGAAIIAIHYYPHFKATKNEDEGNH VGIFTTGAAIDNPIFNFLSEVIATFIFVLILLNLGDFTTGLKPLILGLLIMVIGQAFGET TGFALNPARDWGPRFAYTVLPIPNKGNAHWSYAWVPMFGPLVGAFMATGLQTLVLSMMK >gi|260196036|gb|ACQN01000031.1| GENE 69 66170 - 67018 778 282 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00111 NR:ns ## KEGG: LCRIS_00111 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 1 282 1 274 274 261 50.0 1e-68 MTIGDALKEVQVELGLTAEEMTAGVISKGTYSKVINNKTRLSSDLLLKILFSHGIDIEVF FNKTKDTYAPKNIIIEEKLSQEFGAAFNNHDLVSATDCLKKIQKQNNNPYLLQRAQIGVA FLSNTIEQLDKNLAQLIVNELNTHENWVSNLQALKLFSNSMLVLSDEKVEVLMKIFFIRL KRMNIKSETMIERYAIICSNYLHWKYDSLKQAKSQEKNKHKRNISKSIKYLTKLDKSPRF LIYKILGNYYKNIFTGDIDSAINIKHHLKELGFTSLTKNWPI >gi|260196036|gb|ACQN01000031.1| GENE 70 67265 - 69295 994 676 aa, chain + ## HITS:1 COG:BH0280 KEGG:ns NR:ns ## COG: BH0280 COG4652 # Protein_GI_number: 15612843 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 161 647 147 687 713 87 22.0 1e-16 MIVASLFLIYSINQYSDTHNLKQFDISADYTPFQLPEPASTTHDYLHQLAVIKKTSQKMQ IHFLKRSYFTGYNSGSKFSYNTFKQNVLFESDNLSDSLLSNYFGHHFQSGKVYSTAAKSN SLRLKSYGTIAFTIKEFNYQHAPQSREGIFFIQTTNPNQIEQYLELLSQNYNHEFASNYS VKDFLAPEMYHLNLDSSNLRTLTLVAILFQLIFFIVYFLTFNYENGVYSLLGYSLFQKVN QLILKSLIWGNLPILLLGIFYEVSKQYYDLIFNSLSVLFGLVTLEYLLALAITFILGKLP TNRFLVKRADNKYLFGFAFLAKVVLVFLVFISAQDLADFAGQNIKTAFSQQTNFYHKYVS FYPLVQGYNETLDQIKQEKYQTKNLYPTLNRAGAIYIDTSPLNSEKPYLLQNVDVNVNYL KLVPVKKLNGKKVILSDQDTNKTILLPQRNLQNTDKIAEFYSSKRHEKVKFIIIKNQQAL FNEKGQKINNYQYITVSPLKNVLQKLDLNILTGASADTLKIPLIKNPLATYRHYEKLLAK YNSRDNLPHLIKASDSDLEELKDQAASFYLSDFDLFLSLVTLITVTLSTINLYFSIFGRE FAIKQALGRPLREKTYFYWALILLQTSILLGLIIATKMLNLNNLVLFAILTIGDILFSTI AIKSFSKNLVRRFLND >gi|260196036|gb|ACQN01000031.1| GENE 71 69288 - 69947 242 219 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 198 1 199 223 97 32 2e-19 MTNAIEITNLTKSFKHKPVFQELNLTVPEKALTVIYGKSGCGKSTLLNIIGLLEQADAGT INLLGEKAPKAGTRKAQSFIKNNINYLFQNYALLNEQSIKKNLELVHLVSRETKADFDER AKKILASLNLEVDLNTNVASLSGGQKQRIALARTLLKPGKLILCDEPTGSLDPENRDYIL LALNKAKNAGKTVLVVTHDPYIIKKSDFSYDLKELYKDG >gi|260196036|gb|ACQN01000031.1| GENE 72 69932 - 70804 680 290 aa, chain - ## HITS:1 COG:no KEGG:lhv_1911 NR:ns ## KEGG: lhv_1911 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 284 8 289 289 204 40.0 2e-51 MQIGSLLKEYRLSQGKRQKEFVGEVVSQSYYSKVEKNANRITAEDLIDLLNYNNIPLWEF FSRLNHGSRLHKQEIDDLDTVMIEAYYAADKEKLANVINLIDESNLSEKDKQQQKLIARG WLESTKKPDEPNDDELRQKLKEQVFSSPNFNKNNMALYCNFMDFYDLESNIAISKQIIKQ YQSDTDIDVQRVLLSIIANMLILTIENKKPDLAKFFAKVASKISTNPAIFFYKCCIYFFE SANMYQITRDKKYLIKCDNAVTMFKELGMEAYGNGLNEFIKRQLSNYPSL >gi|260196036|gb|ACQN01000031.1| GENE 73 70908 - 72164 1050 418 aa, chain + ## HITS:1 COG:SP0145 KEGG:ns NR:ns ## COG: SP0145 COG0477 # Protein_GI_number: 15900083 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 185 1 185 408 99 33.0 1e-20 MNVFLKNKSYRRFSIVSFLSGTGDILFYMALMTYASKLENYSLALSLIAISESLPKLLDT FSGYLADRTRKKFKNIFLMALIRFILYSLVGILFASKLSDWTLVLIVIVINLISDTFGSY AGGLVVPLIVNLVGEEDFGEAEGFTSGVSQVIGISAQFLGSGLLLFMSYSNLAFLNAFTF LFAGLLYASIGRKQKDDNQLIESQDINREKFLPTLKSSYNQVKKQPGLLTIVLVVALING TLSALQSLIPIVMVAYKKTMIISNYSFTIAIIGIVVSSGFALGSICGPQLFKKTTIFSIV ITAIILSIATTIIAFIANIYIILPAYFILAATASLASIKLSQWLVMAVNQKILASSMGLL NTILTVMAPTMTTIFTTISGSTNFIVSMSILVIVEVIILFIAIKLNLTAREATTSTLE >gi|260196036|gb|ACQN01000031.1| GENE 74 72260 - 72586 502 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851701|ref|ZP_05557089.1| ## NR: gi|256851701|ref|ZP_05557089.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 108 1 108 108 140 100.0 3e-32 MKNTKFFAGIVMVLMSLYMLFQALTAHLATNAMIAGIIFLVAGIAYIATKDMDNLTGDIA GLVLNLIGWFMTMSIPSISLFGIFALIIAIVLFGLTFMSNSSDSALAK >gi|260196036|gb|ACQN01000031.1| GENE 75 72693 - 73406 639 237 aa, chain - ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 1 214 1 171 345 92 34.0 7e-19 MKRSELKFNAKEKLSNNWAWGALMTLMLMIITYLVSRGIMFLMFGSAGIFGFMMAERALA EDPGFVISLFVSFAGFIYMLSFGISIITGMFNTGVQVGYLHLVDNQKENNVFKNIFLAFR GGRTYNYFVNVLLTSIFTGLWTLLFIIPGIIKSYSYAMTFYILEDMHKAGKEVGVTEAIT KSRQMMKGHKFQLFVLDLSFIGWGILATLALGIGWLGLVPYIQTTKAEFYRKVASEN >gi|260196036|gb|ACQN01000031.1| GENE 76 73489 - 74346 1121 285 aa, chain - ## HITS:1 COG:L66233 KEGG:ns NR:ns ## COG: L66233 COG0656 # Protein_GI_number: 15672250 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 6 285 3 281 281 319 58.0 3e-87 MAINGLSDTYTLNNGVKIPVVGFGTWQTPDGEVAEKSVLAALNSGYRHIDTAAAYGNEES VGRAIKSSGIKRDELFITTKLWNADHGYERTKKAIDASLMKLGLDYLDLYLIHWPNPVAM RDNWAELNSESWKAMEEAQKAGKIRAIGVSNFRKHHLDALLENADVVPAVNQIYLNPSDL QTDVRKENEKHNILSEAYSPLGTGDLLGNELVNKLAQEHGKSSAQILIRWSLEHGFVPLP KSVHEEYIKANGQVFDFSLSNEEMKLLDGLEGKGNLALDPDKADF >gi|260196036|gb|ACQN01000031.1| GENE 77 74396 - 77206 2408 936 aa, chain - ## HITS:1 COG:Cgl1126_2 KEGG:ns NR:ns ## COG: Cgl1126_2 COG1061 # Protein_GI_number: 19552376 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Corynebacterium glutamicum # 200 933 30 783 789 538 39.0 1e-152 MDKVLKDAVLNGLYNSNYPGQVNLTPQLLSNSDEKIWLSLRQELLSAKSFIWAVAFISED MLVPFKQVLEDTEIQGTIITGSYLQFNSPKVFYELLKIPNLTVKISTKAGFHAKGYLFKY ENYQTAIIGSANFTRSAMLANSEWCLKVSSTENASLTEQFKNELYKLNSDSIALSTDWIK AYKKNWIKPKAAKPLIPQEITPNKMQREALDNLFEVINQGQRRALVVSATGTGKTYLAAF AVKQYKPKRFLYLVHRTQIAKKTMASFQKVIGGHKKDYGLLSGNHHDYSAKYLFATVQTL SQDELLKTIDPAEFDFILIDEAHRSAAPSYQKILNYLEPQFCLGLTATPERMDKENIFEI YDYNLAYEIRLKDALQEKMLTPFHYVGVEDYEINGQTIDETSDLAYLTAEKRVDYLLKEI DYYGYCGKKAHGLVFCSRQAEAKELALEFTNRGHKAISLTNQNNETDRQKAVKDLEAGKI EYIITVDLFNEGIDIPCLNQIIMLRNTQSSIVFIQQLGRGLRKYPGKDYVTVIDFIGNYQ NNYLIPLALTDDRSASIDQAKREAQLPSFIGLSTINFSKVASEKILASLEKVKLDGLKQL RNAYHELKNKLGRSPLLYDFYRLGSVSPLVFAQNTSLSSYAEFLEKMGAEILISSFEHKV LSFLTKELLPGKRIHELLFLKLILDYGKVNRDQFESELKKQGAYYNSEVYDSIQKFLMLD FFDVKTGKTTKKVQYGNAPLIEQLNLFDFTFSEPIKKALENADFKRLFTDLIKTAIALNG QYDNQQKFTLYKSYDRKDACHLLNWPLDVSAPMYGYRVGEKDCPIFIIYNKDEEKRSSVY HNTLSDGRSLHWYTRSPRHLDSDEVVRLLSGKINLHLFVKKSDSASREFFYLGEAEIISA QEEKIGPKQKPTVGMELLLQTPLSSAMYQMLFTCEK >gi|260196036|gb|ACQN01000031.1| GENE 78 77253 - 78080 1036 275 aa, chain - ## HITS:1 COG:SP1845 KEGG:ns NR:ns ## COG: SP1845 COG0708 # Protein_GI_number: 15901674 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pneumoniae TIGR4 # 1 275 1 275 275 405 71.0 1e-113 MLLISWNIDSLNAALTSDSARAQKTRHVLTQIAEKKPDILAIQETKLRATGPTKKHAEIL AKLFPDYEYVWRSSEEPARKGYAGTMYLYKNTLEPVVTYPTIGAPDTMDFEGRIITLEFP EYFVTQVYTPNAGGELKRLGDRQGWDKKYIEYLQKLDKEKPVLASGDYNVAHEEIDLKHP ENNHHSAGFTDEERADFTELLSTGFTDSFRKIHGNIPEVYSWWAQRIKTAKANNSGWRID YWLTSNRIADKIKKSEMMDTGERADHCPIVLEIDL >gi|260196036|gb|ACQN01000031.1| GENE 79 78149 - 79291 1141 380 aa, chain - ## HITS:1 COG:HP0106 KEGG:ns NR:ns ## COG: HP0106 COG0626 # Protein_GI_number: 15644736 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Helicobacter pylori 26695 # 1 379 1 379 380 455 58.0 1e-128 MKFDSKLIHGGINEDEETGAVSMPIYRASTYHKPFLSSKLKWEYSRSGNPTRAALESLMA DLEDGNSAFAFSSGSAAIHAVFSLLSAGDEVIIGKDVYGGTFRLANQVMKRFGLNFTVVD TRNLDEVSAAINSNVKAIYLETPTNPLLEISDLAAIAEIAQKHDVLMIVDNTFASPYNQK PLDLGADIVVHSGTKYLGGHSDLVAGIAVAKNEKIAEQLAFLQNSIGAVLSPDDSWLLMR GIKTLGARMRVHEDNAQAVVKYLLDSKYVKKVMYPGLETNPSFSIAKKQMKGFGAMISFE LADQYRAEEFVNRLHMISLAESLGGIESLIEVPAVMTHGSIPREIRLKNGISDGLIRLSV GIEDKEDILADLDQAFKTLD >gi|260196036|gb|ACQN01000031.1| GENE 80 79531 - 80337 599 268 aa, chain - ## HITS:1 COG:no KEGG:lhv_0044 NR:ns ## KEGG: lhv_0044 # Name: not_defined # Def: putative esterase # Organism: L.helveticus # Pathway: not_defined # 1 189 1 188 190 186 50.0 6e-46 MKVLLTGDSIVVRYEGLKEPHINAYLKENFSDIEILNTAVPGINSRYLLAHVDELILKQE KADYLVILIGTNDCAFHKKIEEEEFWTNLNKVAKKILTKYDAKQVILVSPPAVDEEKQRV RDNETVEKYANWVQRVANDYGMHYLNLFHEMETDEHELEEICHGLRNDGLHFGKIGYQIF GDALIDEIRPKKWHQKIINKSQTATYTVTKLPLRILICNIRDCLYIVIKRMELIEERILD NPNWGLSLNKIIILGVLGLLWLFISTFR >gi|260196036|gb|ACQN01000031.1| GENE 81 80417 - 81157 668 246 aa, chain - ## HITS:1 COG:BS_yofA KEGG:ns NR:ns ## COG: BS_yofA COG0583 # Protein_GI_number: 16078903 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 215 1 233 285 69 27.0 5e-12 MQLHDFETFIYLYETRSINLTAKITGYAQSNITARLKKIEEEYRLLLFQRTYQGLVPTEA GTEFYKYAKKVIDLTDDFLKTVTKTSKSQNIVMPKLLFDWLIVEHNDYDIVKDNITVLTS SQITEIEKPKYDTIITYASFSHEDYHQVGVGYLIADFYTNSLSKDIPIIVNSDHNCPFRI RTLKIIKNKKIIELASWDNIIELVKKGKGIALLPKYIGEREKLICLSDKREVRIPYKKYS RNQCSM >gi|260196036|gb|ACQN01000031.1| GENE 82 81260 - 81658 439 132 aa, chain + ## HITS:1 COG:RSp1645 KEGG:ns NR:ns ## COG: RSp1645 COG1942 # Protein_GI_number: 17549864 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Ralstonia solanacearum # 1 128 1 127 140 105 39.0 2e-23 MPYLRVRLACQKSNQNIKQIVAKELTHLAVTKLKKDPNAATVDIKLCEPEDWFIAGKPIS QTNLNSFYLEIKITSGTNTREEKSQFVQASFAKMQELIGPLATTSYIVIQDVASDSWGFG GKTQEWRYITNK >gi|260196036|gb|ACQN01000031.1| GENE 83 81675 - 82307 612 210 aa, chain - ## HITS:1 COG:no KEGG:LCABL_20950 NR:ns ## KEGG: LCABL_20950 # Name: ORF00048 # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 5 124 10 134 279 65 30.0 1e-09 MLYNRVISETKDKQEKLSFRNREFFRKFVTYTSYIAKNKDQDILEKRMLEILDDIIAAQE DGLDADEYFGKDPEKIAQEIVEITPRKGFLTSNGIYGAVAMVFLIHGFQFSNLDVGNAII LAVLGYWLTIYGNHVVSGMIYNKKGVELARNDLKLAGLLLAFIVVIAVGVLVKTPFIIAK NDWINWLFNGILCMLLIWNVWRSLYIKKKK >gi|260196036|gb|ACQN01000031.1| GENE 84 82309 - 82638 498 109 aa, chain - ## HITS:1 COG:BH0406 KEGG:ns NR:ns ## COG: BH0406 COG1695 # Protein_GI_number: 15612969 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 5 106 68 168 174 97 48.0 4e-21 MQRDISSQILKGILQGVMLTILEKNVEYGYSLSKKLDDYGLTNVPKGTIYPLLASMEKKK LIEGRMQESPDGPARKYYYLTPAGQQAKLEFQQEWQQLEEVVNKVLGGE >gi|260196036|gb|ACQN01000031.1| GENE 85 82775 - 84136 1721 453 aa, chain - ## HITS:1 COG:SP0310 KEGG:ns NR:ns ## COG: SP0310 COG1455 # Protein_GI_number: 15900243 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 2 446 3 447 448 446 54.0 1e-125 MENNKIIKFMNEHLLGPMGKMANFRFVRAIMAAGLASIPFTIVGSMMLVLNVIPMAFPQL QGIWNASFVHFTPLYMTINYASMGALALYFNIVLGYEYTKIIATEEKLNMTPMNGALLSM FAFFMTLPELVVKNGTVEVISKAVKDGAGTVSGFSVTSSGLNRLGTAGIFVGIIMAVLAV KLYQLAVKHNWVIKMPPQVPTGVANAFTALIPAFLVGFVVVIIEGLLVFVGTDIFNVIAL PFSFVTNLTNTWLGILVIVFLVHFLWVMGIHGANIIGAFYTPIALANFAANYKGAHYVFA GEFMNMFVIIGGSGATLGIVIWMAFRARSAQLKVLSRTAIVPAFFNINEPIVFGCPIVYN PILMFPFILAPMVTATTSYWAIKLGLVGKVIAQMPWPSPLGIGAFIGTGGDWKAAVLAVI NVFLAFLVWYPFMKMYDNKLLAQEKANQTSEQK >gi|260196036|gb|ACQN01000031.1| GENE 86 84163 - 84312 155 49 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0282 NR:ns ## KEGG: PEPE_0282 # Name: not_defined # Def: cellobiose-specific PTS system IIA component # Organism: P.pentosaceus # Pathway: Phosphotransferase system (PTS) [PATH:ppe02060] # 1 46 61 106 107 66 71.0 4e-10 MLTEEARGNHAKLTLLVVHAQDHLMTAITYIDLAQELVDVYKQMAELKK >gi|260196036|gb|ACQN01000031.1| GENE 87 84339 - 85220 668 293 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851689|ref|ZP_05557077.1| ## NR: gi|256851689|ref|ZP_05557077.1| cellobiose-specific PTS system [Lactobacillus jensenii 27-2-CHN] # 1 293 1 293 293 480 100.0 1e-134 MIVGIVLLVVSGLLSSLFYSKKKYIWFLLCLIFALCCFLGFTADITNILLFQVIMGVTTL GALGIFAYLVLLNKKGKKPRYNKTIFAITILALLFAVMGISSPKDFMLHTDEVIAKDKGN HTNSKYFEVLTSKDNWDTENKMFSIDTNSKGKVSLKLKGLRDCTVTIKNSPDFDKDTDQS VKTRKIELRAGETKTLSFAMKNSDYVEIELVIVDPDGKKTYVEFNNEMEDNSSDSDSDTD SDSDTNDSDDKDSDDDNTLGKQLIKHLPKKQLMQLKKVTLIKQKLRLRQQMKR >gi|260196036|gb|ACQN01000031.1| GENE 88 85350 - 86495 1477 381 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 380 1 378 378 273 41.0 3e-73 MNKQERIQVLTDLIKINSINGNELEVATYLKALFAKHNIEAAIDAFGDKRANLIMELNPQ ASGPILGLTGHMDTVDLVNEAKWQSNPFEPKLDGDKLYGRGSADMKSGLAAEVIALIELV ESGRIKGHVRFLATAGEEYGTPGANRLEEQSYAADLAALIVGEPTGGDIVYAHSGSLNYR IKSHGQAVHSSRPEEGKNAITGLVKFYVAEQELFNNAPKDPYLGEIKHSITVIEGGKQVN IIPAEAKLEGNIRPTKAFSNEEVIKSLKALVSKLNQAEATHLEFELIHNFYPVVTSPDDA FVKKGLAATTDAFANLRKPKLRIINGATDASVFVKRRPDLPVFILGPDKWKLAHQINEYT TISSYLAVIEAYKNIILNFFE >gi|260196036|gb|ACQN01000031.1| GENE 89 87104 - 87811 771 235 aa, chain + ## HITS:1 COG:CAC3658 KEGG:ns NR:ns ## COG: CAC3658 COG1285 # Protein_GI_number: 15896891 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Clostridium acetobutylicum # 9 228 4 227 229 174 40.0 1e-43 MTILAIAGFTTQVEWLIRIIVAALCGAVIGYERAIQRKSAGVRTHIVVAVASALFMIVSK YGFYDLLTTNEIALDPSRIAAQIVTGISFIGAGTILVRREQISGLTTAAGVWATSAIGMA VGSGLYTIGVLATIFIFFIQMLFHDDSIISRIIIHVRFNVQIVCVNTPNILNEIQNELEN NHVESIAIKILDVDDEQIVFNADGIINNKIDENNIIMHLRKYPDIKRIIYTRGGK >gi|260196036|gb|ACQN01000031.1| GENE 90 87904 - 89052 1072 382 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00021 NR:ns ## KEGG: LCRIS_00021 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 379 1 382 409 426 52.0 1e-118 MAGPLDYLRWRGDLSFKQRQYNSVDGAILASIAYLPFDESIVGHSLKEACERILALYSGS LDLHRKTETRLLVKSPRFADLKILDWTSRLEAEPAPLQFAALTLQLDKNTILISFRGTDS SVVGWNEDMIMNYSYQIYGQTVARDYLEAMADKFKNCKIYITGHSKGGHYAIHSLAAARY DVQDRVINALNFDGPGYRSVFAESAGFKRAIDKMRTYVPESSVFGIMLDHPERTLVVKSV YPMMHQHTPLNWSVGRNSFVLAEGLTTSARIIRHALIQFNQSIPAEKRGQLWSAIFLAFE NMDITDMNVFTEHRIRGTWTLGKVVMGMDPEVRQVATEMIKLIYQSAKNNYLPFSEGDFS ACPKSNDSSKAPIFFESYNFKD >gi|260196036|gb|ACQN01000031.1| GENE 91 89085 - 90452 1693 455 aa, chain - ## HITS:1 COG:SP2203 KEGG:ns NR:ns ## COG: SP2203 COG0305 # Protein_GI_number: 15902010 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Streptococcus pneumoniae TIGR4 # 10 449 11 445 450 459 57.0 1e-129 MDNVVSPQIPHDSEAEKAVLGAIFIDPEAIADAEAIVTADDFYERANRILFAAMKDLVDR DEAIDPLTIRDELAKRKQLEDIGGIAYISDVAVATPTSAHVTYYAQIVHRKSQLRRLIAA SQKIIQNAMEGSDDVANILDDAEKQIMDVSSDTNSAGFRNIKEVVQKALDEINAATAADT DVTGLSTGFVNLDKMTTGLHEDELIILAARPGVGKTSFAMNVAQYAGLHDHKTVAVFSLE MSGEQLVQRMLASEGLIDSMHLRTGQLNNEEWNKLVVAAGALATASIFIDDTPGIKMSEI RAKARKLAKEDGNLGLIVIDYLQLIEGPKSESRQQEVSAISRQLKKLAKELHVPVIALSQ LSRSVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRDEEGSEDNDQQGDDDNGEV EVIIEKNRSGSRGTVKLMFSKPYNRFSNLDYAHDE >gi|260196036|gb|ACQN01000031.1| GENE 92 90468 - 90920 743 150 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525172|ref|ZP_03955221.1| 50S ribosomal protein L9 [Lactobacillus jensenii JV-V16] # 1 150 1 150 150 290 99 2e-77 MKVIFVQDVRGRGKRGEVKNVPDGYAQNYLIKRGLAKEANKGNLNTLKRVEANEKAAYEA EKADAIKIKKQLESDNTVVQFKSKAGTDGRLFGSISGKKIVEGLEQQFGLKIDKRKLELP EPVKALGYTNVKVKLFKGVESPIRVHITEE >gi|260196036|gb|ACQN01000031.1| GENE 93 90940 - 92958 751 672 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|194246575|ref|YP_002004214.1| 50S ribosomal protein L9 [Candidatus Phytoplasma mali] # 48 665 62 679 837 293 29 6e-94 MKDFFRKLELPEFIKDSRLSSSVLIVIFLSLFSAVVGVMISPFFGLAMVLIFVLIVAFTV YGAYILAGNASNFAANLSYRIKRSEQEAMIKMPLGILLYDSDHHIQWVNPYLQMYLEDED VLGRSISSVDPELGKIFETILSNKKTSQNQLVKWGSRQFEMIVQDNLGVIYLLDITRYAQ IEEKYEAERLAIGLIFIDNYDELSQGMHDQELALMSSYVQNTLSEYAAKFHAYLKRIDED HFLLLTHMQDLKKLEGDKFSVLDKVRLETSRNNTPLTLSIGLAYGSDSLNEVADQAQSNL DLALGRGGDQVVLREPGKEARFFGGKSNPMEKRTRVRARMVSQALQEIFKDADQIFVVGH QRPDMDAIGGGIGIVKIARAHGVKAHVVLDTNHTNYDVGRLVARLEKEKDLDLFISPEDA LAQATDQSLLVMADHSKYSITYDAKLYDKLKNRLVIIDHHRRGEEFPENPMLIYIEPYAS STCELVTEMIEYQPQRGEQLLTDLEATAMLAGITVDSKEFSLRTGTRTFDAASYLRSIGA DSAIVSDLLKEDIESFTQKAKLVASLKMYKDDIALLLGPDDKIIDPIVTAQAADMALSLE HVDASFAVTRRKKDTIGISARSMGDINVQVIMEKLGGGGHLSNAATQLKDITIDEAKEKL EKAIEDYLEENE >gi|260196036|gb|ACQN01000031.1| GENE 94 93091 - 93327 396 78 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525170|ref|ZP_03955219.1| 30S ribosomal protein S18 [Lactobacillus jensenii JV-V16] # 1 78 1 78 78 157 100 3e-37 MPQQRRGGRRHRKVDFIAANHIDYVDYKDVDLLKRFISERGKILPRRVTGTSAKNQRKLT IAIKRARIMGLLPFVAED >gi|260196036|gb|ACQN01000031.1| GENE 95 93351 - 93866 754 171 aa, chain - ## HITS:1 COG:BH4049 KEGG:ns NR:ns ## COG: BH4049 COG0629 # Protein_GI_number: 15616611 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Bacillus halodurans # 1 171 1 168 168 160 53.0 1e-39 MINRVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYANAQGERGADFISCVIWRKAAEN FCNFTNKGSLVGIDGRIQTRSYDNKDGQRVYVTEVIVDNFSLLESRKDREARSQNGGYAP QNNGSSYAGNSNQNTNFQANNSAPNTNNAAPQDPFADSGSTIDISDDDLPF >gi|260196036|gb|ACQN01000031.1| GENE 96 93903 - 94196 500 97 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525168|ref|ZP_03955217.1| ribosomal protein S6 [Lactobacillus jensenii JV-V16] # 1 97 1 97 97 197 100 2e-49 MTTKYEVTYIIKPDIDDEAKKAVVDKYDKVIADNGATMVESKDWGKRRFAYEINKYREGT YHIMTFTAEDAKAVDEFGRLSRIDNQVLRSMTVKLDK >gi|260196036|gb|ACQN01000031.1| GENE 97 94401 - 96878 3636 825 aa, chain - ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 6 819 2 819 822 1010 62.0 0 MDNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVT PDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPA AMRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGM TTNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKG NVVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRH GMRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQE DVVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSESSDIAKATLISRFELDDK QAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADYKDILAKPERIDHIIYTELLDIQKRF GDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNGYIKRMPVSEFRTQNRGGRGIKGMGV QDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIPEYSRTAKGLPIINLLQLDKGEKIQ AMINVPEGHEDGNLFFITKMGVVKRTSVEEFSNIRNSGLIALTLRDGDELSNVLTTDGKQ NIIIGTHMGYAASFKESDVRVMGRSAAGVRGINLRENDYVVGSEVLKPGAEVLVISENGY GKRTAVSEYPIKGRGGKGILTTKLGKKNGPLAGMTVVDGTTDIMLITTDGIMIRFKTEDV SQTGRATMGVRLIKLGEGDSVASLTAVPNEDDDTEDQDENSKSEE >gi|260196036|gb|ACQN01000031.1| GENE 98 96890 - 98845 2306 651 aa, chain - ## HITS:1 COG:lin0006 KEGG:ns NR:ns ## COG: lin0006 COG0187 # Protein_GI_number: 16799085 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 1 650 1 645 646 824 67.0 0 MADDKMKDVKEYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNG IDECLAGFATKIEVTVEEDGSVTVQDDGRGIPVDIQEKTGRPAVETVYTVLHAGGKFGGG GYKVSGGLHGVGASVVNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKQIGTVDPGQHGT IVHFYPDPDIFTETIVFDDKILKKRIQELAFLNKGLKLTFTDKRKSSAETDVYHYEGGIK EYVAFLDKKEEKLFDTPVYVEGDYDGINVEVALQYTTGYKTTMMTFANNIHTYEGGMHEA GFKTALTRVINDYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNS DARAAVDKAFSEAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANL PGKLADNTSNDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILA NQEIRTLFTALGTGFGADFDVKKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKA GYVYIARPPLYQVKQGKIIKYLDSDEELHDYLGSLQPSPKPTVQRYKGLGEMSADQLWET TMDPENRRLDRVDPAYAEDADAVFEMLMGNEVGPRRDFITKNAKYVENLDA >gi|260196036|gb|ACQN01000031.1| GENE 99 98848 - 99972 947 374 aa, chain - ## HITS:1 COG:BS_recF KEGG:ns NR:ns ## COG: BS_recF COG1195 # Protein_GI_number: 16077072 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Bacillus subtilis # 1 369 1 368 370 331 48.0 1e-90 MYLKQLKLQNWRNFEELETDFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKEL IRFGQKAAILSGHVVKSQVETDLQVRINTKGKKAWINRIEQSKLSRYVGQLNAILFSPED LALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDKVFLEV LSDQLAGLAAEIISRRLKYLAYLSEYAKEAYAAISNEKERLEVVYNPSVTLTSGQTSSES IYHEVLACFKKNEAGEIRTGTTLAGPHRDDLQFLLDKKDAHLYASQGQQRTIALSLKLAE IQLIHQITGEYPTLLLDDVMSELDHTRQSALLNYIHGKTQTFITTTDLEGISWEIVKTPK IFRLKAGVISEGDD >gi|260196036|gb|ACQN01000031.1| GENE 100 99975 - 100190 90 71 aa, chain - ## HITS:1 COG:BS_yaaA KEGG:ns NR:ns ## COG: BS_yaaA COG2501 # Protein_GI_number: 16077071 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 9 65 7 63 71 67 56.0 5e-12 MSKIKIFKIKGEFITLGQFLKEETYVGSGGQAKWFLAESPVILNGQEENRRGKKIHVGDE VEVQGQIYKFE >gi|260196036|gb|ACQN01000031.1| GENE 101 100407 - 101537 1229 376 aa, chain - ## HITS:1 COG:SA0002 KEGG:ns NR:ns ## COG: SA0002 COG0592 # Protein_GI_number: 15925707 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Staphylococcus aureus N315 # 1 376 2 377 377 317 46.0 2e-86 MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEELVLTGSDTDISIEIKIPVS ADLTVESTGSIVLPARFFNEIIKKLPGKDFSFEVKEGLQTQISSENSEFTINGLDANNYP RLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVFNQAKIKAVATDSHRL SQRIIDLENGPQVEADLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNVSFYSRL LEGTYPDTDRLLPTTSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTENGVAQLE GDSPEIGTVEEKPWAKQITGQNLEISFNPDYLQAALRASITDTVIMNFTEPLRPFTVVPG KEDVEFIQLITPVRTY >gi|260196036|gb|ACQN01000031.1| GENE 102 101703 - 103028 1443 441 aa, chain - ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 439 15 447 449 404 48.0 1e-112 MRQEYNEVAYNAWFKNTKPVSYNKETNELVIAVKNPIAKGYWEANLSTKLIQTAYAYGNF EVLPIFEVDGDEPTERFKAPQPPKKVPERSVSPVKDDFVAKNLQLNEKYTFDTFVQGEGN KLAEGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQMLCERPNAKVVYIQSETFV NDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMT SDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRKKAESEGLVIDDDTLDYIAS QVSTNIRELEGALVKVQAHATIEKADINVNLARDALTDLKLVQKSRGLQISKIQEVVANY FQTTVNELKGKKRVRQIVVPRQIAMYLSRDLTDASLQKIGQEFGGKDHTTVMHAYEKIEK DIRTDAEIKSAVYELKQLLDR >gi|260196036|gb|ACQN01000031.1| GENE 103 103536 - 103676 234 46 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227525161|ref|ZP_03955210.1| 50S ribosomal protein L34 [Lactobacillus jensenii JV-V16] # 1 46 1 46 46 94 100 2e-18 MTTKRTYQPKKRHRQRVHGFMKRMSTSNGRKVLARRRAKGRKVLSA >gi|260196036|gb|ACQN01000031.1| GENE 104 103730 - 104098 349 122 aa, chain + ## HITS:1 COG:lin2987 KEGG:ns NR:ns ## COG: lin2987 COG0594 # Protein_GI_number: 16802045 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Listeria innocua # 1 114 1 113 119 96 46.0 1e-20 MKKSYRVKSEKDFQTVFNKGDSVANRAFVVYKLIRPENKHFRVGISVGKKVGHTAVVRNR LKRYIRATLTEVKDEVDVKADFLVITRPYARKFTMAEVKKNLIHAMTLAKLINQDSEENE GI >gi|260196036|gb|ACQN01000031.1| GENE 105 104100 - 104957 922 285 aa, chain + ## HITS:1 COG:L131778 KEGG:ns NR:ns ## COG: L131778 COG0706 # Protein_GI_number: 15672111 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 33 284 23 269 269 218 44.0 9e-57 MKDILTKKNVKRFIAFLAVLTIAVVLTGCANNTGNVSHTSGSWWDRYVIYYFSQFLLWLA DLLGKNYGWTIIVFTILVRLLLFPLNAISIKSTTKQQQLQPEIDKLRAKYPGNDAESRQL LNAETQKLYKEAGINPYLGCFPMLLQLPFMFALYQAIYSTKQLQDGTFLWMNLSKADPYY VMPILAAVFTFMSSYVAQMSAPESSSQSMTKAMMWITPLIVAVPAISFPTAITLYWVVSS IFSVVQTFILQNPFKYAREQEAKKQAEKERQRKIRRAYKKLNRKK >gi|260196036|gb|ACQN01000031.1| GENE 106 105051 - 106433 1625 460 aa, chain + ## HITS:1 COG:SP1016 KEGG:ns NR:ns ## COG: SP1016 COG0486 # Protein_GI_number: 15900887 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 6 460 5 457 457 503 60.0 1e-142 MPTLTEFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGKDLSKVASHTINYGHIID PETSKVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKHGARMAEAGEFTK RAFVNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGLLDKIRNMRQEILDTLANVEVN IDYPEYDADQVTATQMQETSKKVIEAINRLLKTANQGKIMRNGLATAIVGRPNVGKSSLL NYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEKIGVERSKKAI EQADLVLLLLNASEALTTEDEKLIDYTKNKKRIVVLNKADLGIKLNKEDLKVQTQASIVV TSILKEENLNELEEAISKLFFSGIHNSNDEVLVTNQRQAGLLEKAKDQLTDVVDAVDNDV PLDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLGK >gi|260196036|gb|ACQN01000031.1| GENE 107 106443 - 108347 2144 634 aa, chain + ## HITS:1 COG:BS_gidA KEGG:ns NR:ns ## COG: BS_gidA COG0445 # Protein_GI_number: 16081153 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Bacillus subtilis # 5 632 3 628 628 823 66.0 0 MLKTYSSNEYDVIVVGAGHAGCEAALASAKMGQKTLLITISLDMVAFMPCNPSVGGPAKG TVVREIDALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKVQYHETMKRTIEDTPN LTLRQATVDELIVEDGVCHGVVTNTGAKYLAKSVVLTTGTSARGRIIIGELTYSSGPNNT IAAIKLSENLEKLGFKLRRFKTGTPPRVNGNTIDFSKTEEEPGDSEPRHFSFETKDEDYL KDQLSCWMTYTNETTHKIIRDNLDRAPMYTGVIEGIGPRYCPSIETKIVRFADKPRHQIF LEPEGKHTDEYYVGDFSTSMPEEVQQDMVHSIAGLENAEMMRPGYAIEYDVIEPWQLKHT LETKNIKNLFTAGQMNGTSGYEEAGGQGIVAGINAALRAQGKPGFTLGRDEAYIGVLIDD LVTKGTNEPYRLLTSRAEYRLLLRNDNADLRLTEYGHKLGLISDERYQKFEEKKAAIKQT LAELYDITIHPNDEVQEYLESIGQSPLNAGLKASAFLRRPGVTIAAIEKLSGTKLNSDRY VREQVEIDVKYAGYIKKQELQVQKLRRLESKKIPEGIDYSKIAGLATEARQKFEKIRPES IAQAERISGVNPADIAILTVYIQQGKYSKVEDKG >gi|260196036|gb|ACQN01000031.1| GENE 108 108654 - 110459 2166 601 aa, chain + ## HITS:1 COG:L0199 KEGG:ns NR:ns ## COG: L0199 COG0028 # Protein_GI_number: 15674026 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Lactococcus lactis # 1 563 1 562 567 525 45.0 1e-148 MAKINGSDAMFKVLYDWHIDHIYGFPGGSFDSSMNAIHNWKDRIKFIEVRHEEAGALAAS AEYKLTGKVGVCFGSAGPGAAHLFNGLYDAKFDKTPMVAIVANVPEGRQDIDFFQAFDED KWFLNASVFCRQPKTAAQIPVVMDECIRQAYARKGPAVMIISKDLGWEKIDDNFRVNYDA RVEDNYAAPTKSSVEEAVKLLKEAKNPVMYYGNGAKGCGEEIKEFAEKFKTPLLTSYLGK GIVEDEFPAYMGTIGRIGPKPANEIQGHTDLVVWVGNNSPFSVLWFPKDAKVIQIDVDPA KFGKRHKVDVSMLADAKKSLRAIIDAGEARDESPLYKAAIADRQNWDEWLDSFKDSKESP VRQEPIWDVINKEAADNAVFAIDVGNVNMDHTRLLKMHGDQKWTTSGLHATMGYGAPAAL TAATVYPDREVWQLAGDGGFAMMCEELLTMARYNMHVLNVVFTNETLGYIQAEQEDESHQ PLSGVIIPDNDWAKVAEGMNVKGVTVRTKEEFEAAVKEWKKMDGPMLIDIKYTHDMHYST ELNTLDDPAFVAKYQAEPLKPFSYFAEKFGLDTDSATGASAHEEEVEEEPEEDATSGASA H Prediction of potential genes in microbial genomes Time: Wed May 25 14:10:10 2011 Seq name: gi|260196035|gb|ACQN01000032.1| Lactobacillus jensenii 115-3-CHN cont1.32, whole genome shotgun sequence Length of sequence - 57208 bp Number of predicted genes - 49, with homology - 49 Number of transcription units - 24, operones - 12 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1207 1554 ## LJ1313 hypothetical protein + Term 1226 - 1270 10.2 + Prom 1224 - 1283 7.6 2 2 Tu 1 . + CDS 1306 - 2694 1635 ## COG0362 6-phosphogluconate dehydrogenase + Term 2710 - 2748 3.0 + Prom 2732 - 2791 6.9 3 3 Op 1 . + CDS 2839 - 3798 943 ## COG0679 Predicted permeases 4 3 Op 2 . + CDS 3833 - 5389 1045 ## COG0038 Chloride channel protein EriC + Term 5395 - 5428 4.0 - Term 5383 - 5416 4.0 5 4 Op 1 4/0.000 - CDS 5426 - 6736 1360 ## COG2252 Permeases - Prom 6763 - 6822 7.5 - Term 6743 - 6787 0.7 6 4 Op 2 . - CDS 6832 - 8139 1470 ## COG2252 Permeases - Prom 8189 - 8248 5.7 + Prom 8267 - 8326 7.4 7 5 Tu 1 . + CDS 8364 - 9590 1531 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 9634 - 9673 8.1 + Prom 9668 - 9727 11.6 8 6 Tu 1 . + CDS 9761 - 11347 184 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 11352 - 11385 3.1 - Term 11338 - 11371 3.1 9 7 Tu 1 . - CDS 11384 - 12880 1102 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 12928 - 12987 8.7 - Term 13016 - 13072 10.1 10 8 Op 1 3/0.000 - CDS 13075 - 13746 955 ## COG1428 Deoxynucleoside kinases 11 8 Op 2 . - CDS 13771 - 14421 815 ## COG1428 Deoxynucleoside kinases - Prom 14458 - 14517 6.5 - Term 14504 - 14561 8.0 12 9 Tu 1 . - CDS 14575 - 15294 833 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 15319 - 15378 6.1 - Term 15346 - 15383 6.1 13 10 Op 1 26/0.000 - CDS 15392 - 16348 1277 ## COG1079 Uncharacterized ABC-type transport system, permease component 14 10 Op 2 24/0.000 - CDS 16348 - 17493 1185 ## COG4603 ABC-type uncharacterized transport system, permease component 15 10 Op 3 15/0.000 - CDS 17493 - 19028 187 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 19049 - 19108 3.6 - Term 19051 - 19084 2.2 16 10 Op 4 2/0.000 - CDS 19113 - 20174 1617 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 20318 - 20377 9.7 - Term 20325 - 20362 7.3 17 11 Op 1 2/0.000 - CDS 20409 - 21482 1381 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 18 11 Op 2 . - CDS 21542 - 22621 1031 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 22652 - 22711 5.3 - Term 22855 - 22892 1.0 19 12 Tu 1 1/0.286 - CDS 22902 - 23828 891 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component - Prom 23956 - 24015 10.9 - Term 24002 - 24034 2.0 20 13 Tu 1 . - CDS 24075 - 25013 1184 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component - Prom 25095 - 25154 7.2 - Term 25065 - 25102 0.0 21 14 Op 1 . - CDS 25162 - 26247 921 ## COG1434 Uncharacterized conserved protein 22 14 Op 2 . - CDS 26320 - 27477 1088 ## COG0475 Kef-type K+ transport systems, membrane components - Term 27495 - 27548 19.0 23 15 Op 1 . - CDS 27580 - 29436 2055 ## COG2217 Cation transport ATPase - Prom 29506 - 29565 10.3 24 15 Op 2 . - CDS 29567 - 30034 356 ## COG0517 FOG: CBS domain - Prom 30210 - 30269 10.7 - Term 30814 - 30861 6.7 25 16 Tu 1 . - CDS 31068 - 31943 764 ## COG0583 Transcriptional regulator - Prom 31998 - 32057 8.4 + Prom 31922 - 31981 9.7 26 17 Tu 1 . + CDS 32079 - 33701 1995 ## COG0281 Malic enzyme + Term 33720 - 33757 3.1 + Prom 33704 - 33763 13.9 27 18 Op 1 . + CDS 33798 - 34943 958 ## LBA1927 hypothetical protein 28 18 Op 2 . + CDS 34972 - 35271 280 ## gi|282933290|ref|ZP_06338676.1| hypothetical protein HMPREF0886_1312 29 18 Op 3 . + CDS 35340 - 35525 145 ## gi|256851640|ref|ZP_05557028.1| predicted protein 30 18 Op 4 6/0.000 + CDS 35541 - 37049 1721 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 31 18 Op 5 7/0.000 + CDS 37046 - 38275 891 ## COG1696 Predicted membrane protein involved in D-alanine export 32 18 Op 6 6/0.000 + CDS 38305 - 38544 447 ## COG0236 Acyl carrier protein 33 18 Op 7 . + CDS 38537 - 39853 1365 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) 34 18 Op 8 . + CDS 39853 - 40785 582 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 40786 - 40821 5.1 - Term 40772 - 40807 5.1 35 19 Op 1 2/0.000 - CDS 40834 - 41844 1260 ## COG1087 UDP-glucose 4-epimerase - Prom 42048 - 42107 4.6 36 19 Op 2 21/0.000 - CDS 42112 - 43296 1198 ## COG0477 Permeases of the major facilitator superfamily 37 19 Op 3 . - CDS 43316 - 44500 707 ## COG0477 Permeases of the major facilitator superfamily 38 19 Op 4 . - CDS 44542 - 44772 242 ## gi|256851631|ref|ZP_05557019.1| predicted protein - Prom 44860 - 44919 6.8 + Prom 44814 - 44873 5.0 39 20 Op 1 . + CDS 44899 - 45057 125 ## gi|297205237|ref|ZP_06922633.1| possible cellobiose-specific PTS IIC 40 20 Op 2 . + CDS 45069 - 46268 1048 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 41 20 Op 3 . + CDS 46240 - 47142 733 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 47156 - 47215 18.1 + Prom 47154 - 47213 11.0 42 21 Op 1 . + CDS 47359 - 49398 1334 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 49409 - 49444 4.2 + Prom 49403 - 49462 1.9 43 21 Op 2 . + CDS 49487 - 50137 569 ## COG1418 Predicted HD superfamily hydrolase 44 21 Op 3 1/0.286 + CDS 50217 - 50948 801 ## COG2071 Predicted glutamine amidotransferases 45 21 Op 4 . + CDS 50962 - 52371 1557 ## COG0531 Amino acid transporters + Term 52385 - 52432 11.5 + Prom 52403 - 52462 8.1 46 22 Tu 1 . + CDS 52505 - 53413 731 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Term 53382 - 53426 10.2 47 23 Tu 1 . - CDS 53433 - 54425 962 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 54451 - 54510 5.4 + Prom 54366 - 54425 7.1 48 24 Op 1 1/0.286 + CDS 54609 - 55901 1908 ## COG0104 Adenylosuccinate synthase 49 24 Op 2 . + CDS 55902 - 57197 1538 ## COG0015 Adenylosuccinate lyase Predicted protein(s) >gi|260196035|gb|ACQN01000032.1| GENE 1 2 - 1207 1554 401 aa, chain + ## HITS:1 COG:no KEGG:LJ1313 NR:ns ## KEGG: LJ1313 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 169 313 55 198 509 91 36.0 5e-17 SIAKESTTSSASSESSVAKESTTSSASSESSTAKESTTSSASSESSTAKESTTSSSTEKE EEVTGVVYAPVINNNPGWMIALLDGEGHYTGKYIPTNTSWKVFAKKTISNREMYRLGSDQ QWVPAEYVTVKNLEVVSKTTTEPKKSDSKEEALSGVAYVPTLKDHPTWQVALLDGDGHYT GKYIPTNSNWKVFAKKTINNRLMYRLGSDQQWVPAEYATLKSTVAEKTSESVPTKVTSNE EALSGVAYVPTLKDHPTWQVALLDGEGHYTGKYISTNSNWRVFAKKTINNRLMYRLGSDQ QWVPAEYATLKSTVAEKTSESVPAKAISNEEAMSGVAYAPVINNNPGWMIALLDGEGHYT GKYIPTNSNWKVLAKKTISGVEYYRLGNDQQWVAARYLKLK >gi|260196035|gb|ACQN01000032.1| GENE 2 1306 - 2694 1635 462 aa, chain + ## HITS:1 COG:YPO1541 KEGG:ns NR:ns ## COG: YPO1541 COG0362 # Protein_GI_number: 16121814 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Yersinia pestis # 2 458 4 467 469 473 51.0 1e-133 MQEFGVIGLSVMGKNLALNIHSKGYSVSGFSIDKPEVDALAKYADDKLKPTYTWEEFVNS LEKPRKILIMIRAGKPVDLTLEKLTQLLEPGDIVIDGGNSNFHDTRRRFHELEKFGLHFI GMGVSGGEEGALHGPALMPGGDEAAFEKVRPILEAIAAKTPEGRPCVSYIGPEASGHYVK MVHNGIEYGIMQLFSEAYDMLRKACGLSNDEMSDLFDKWNHEDLQCYLAEITAEVLKKDD DLTDDKVIDHILNEASYKGTGNWTLEDAIVLGAPISVIAEAVLARFMSKATTRTGKEITV DQSKIDANLPEVIASALYLGQAVCYAQGFMQLKMAAKAYDWTLRYPGIAQNWEAGCIIRS KTLKDIEDAFEKHPDINNLFEAPFFAKMMQDRLPDLRKVVSVAAENGIPTPTLSAALNYL ESIFNPSLPANLIQGQRDYFGAHTYFRNDREGVFHTEWYDEK >gi|260196035|gb|ACQN01000032.1| GENE 3 2839 - 3798 943 319 aa, chain + ## HITS:1 COG:CAC0366 KEGG:ns NR:ns ## COG: CAC0366 COG0679 # Protein_GI_number: 15893657 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Clostridium acetobutylicum # 11 316 7 297 301 79 26.0 9e-15 MTTFISSISSVVVVILIIALGFILRQKKWFADTFAGNISKLIMQIALPASIFISVQTHLT RSSLLNLFEGLLVPAIGVFLSYLIAFILIAVFKIPAGRRGTFINTLANANTIFIGMPLNI ALFGENAMSYFLIYYVINTVSTWAIGIFFMQSDSLPGKKKEEAHFNWKKLLPMPLLGFIV AILWLLTGISLPSFVSSTFTYVGNLVTPLSLIYIGIMLADIGLKNIKLDKDTILAVLGRL VIAPIIMLGLVEWLMPSMGVHMANLMKDTFIIQSATPALSVLPILADQGHGDVEYATNVV AITTIFFVVVVPVLMLVAS >gi|260196035|gb|ACQN01000032.1| GENE 4 3833 - 5389 1045 518 aa, chain + ## HITS:1 COG:L113400 KEGG:ns NR:ns ## COG: L113400 COG0038 # Protein_GI_number: 15673646 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Lactococcus lactis # 10 501 1 493 512 329 40.0 8e-90 MHFLRYNKTVTLKEISMEKNKLNNLKLMAISLLVGLVSGLVVGAFRWLIGLLQSYWLYSF RLVHGNYGYWILIILGLLLTGLIAGYLVKNEPHAGGSGIPEVELQLQGKLQLNWWNILWR KFIGGILAIGSGLFLGREGPSIQLGAAVGQGISNKCSKTNQRVLLAAGAASGLSAAFGAP LGGTMFVLEEVFHNFSPRVWLNSLTAALAANFLVSNLFGQRPVLAIPYNHSFSVDLYWHL LVLGVLLGIIGRIYQWGLLNGKKIYTKIPLPRWLHGLIPLGMLIPIAYFVPQVIGGGNQL ILNWHGFNAIEILFLVFLLRISFSIISYDSGLPGGIFLPILTMGALLGALYGMIMVNLGL LPRVLIVNLVIFSMAGLFSAIVRSPFTAILLITEMVGSLLHLMPLAVLALVAYLVNDLLG GKPIYESLADRMEHSNIADYADNVDQLTVSIFENSKLADKEIKDIAWPSKTLVRLIHRGA HDIIPTGKTKLLAGDLVVLEIDSNARGCIYDQIKDMQK >gi|260196035|gb|ACQN01000032.1| GENE 5 5426 - 6736 1360 436 aa, chain - ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 4 431 1 429 434 361 51.0 2e-99 MKNINRFFKLTEQGTSFKTELIASLTTFVSLSYMLFVVPNILTASGMGKGTVFTALVLAS ALGSIVMGLVANYPIALAPTLGSASFFAYTVCQGMKISWETALAGVLVASLLFVLITIFK LREIVINAIPQDLKYAISAGIGIFIAFIGLQNGKLIVNSDSSLVGLGSFSNPAVWIAVFG LLVTIVLMCLGVPGSIFIGMVVTAIFGILIGQIPLPKEFISMPPSIAPSFGQAVTHLGNV NTVQMAIVVITFLLVTFFDTAGTLIGMTQQAGLANKDGKIPRIGKALMSDSIGMIISSIF GVSPLGTVVESSSGIAMGGKTGLTAVFVGFWFLIAMFFSPLLTVIPTTVTAPALIIVGVL MASNLAKINWDKFEVALPAFLIVLGMPLTYSISDGLALGMITYPITMLASKRGKEVSPIM YGLFFIFIIYLWIINI >gi|260196035|gb|ACQN01000032.1| GENE 6 6832 - 8139 1470 435 aa, chain - ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 6 434 3 433 434 395 55.0 1e-110 MNIIRKYFDLDKLGTNIKIEFLAGLTTFVSMSYILFVNPNVLGVSGMDKGAVFTATALAS ALGCFIMGLASNYPIATAPALGINAFFAYTACLGMHVKWQTALAAVFVASFIFILITMFK LREKIIDAIPVDLKHAISAGIGLFIAFLGLANAGLVEASKSTFVTVGSLKNPTVWIAIFG LLVTIVLMIMNVPGAIFIGMVLAAIFGILTGQIKLPTAVVSSAPSIAPTFGQAFKHIGDI NTMQMWVIVLTFLLVTFFDTTGTLIGLASQAGLMKDNKMPRVGRALAADSGAMMAGSILG TSPVGAYVESSAGIAVGGKSGLTAVFVGIFFLISMIFSPLLSVITTQVTAPALIIVGVLM AQNLAKVDWTKLEIAVPAFLIVIGMPLTYSISDGLSWGMITYPITMIAAKRGKEISPMMW VLFFIFIIFMWVLNA >gi|260196035|gb|ACQN01000032.1| GENE 7 8364 - 9590 1531 408 aa, chain + ## HITS:1 COG:L78730 KEGG:ns NR:ns ## COG: L78730 COG1304 # Protein_GI_number: 15673234 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Lactococcus lactis # 8 365 20 381 383 342 49.0 5e-94 MTVYYKGFPQSDRNEAIKMVNVDELEDRVRKVMPEAAYYYIASGSENEWTWRNNTTAFNH FQIVPRSLTNMDSPSTATQFMGMDLKTPIMICPIACHGIAHKDAEVATAQGAKAAGALFS SSTYANKSVEDIAAATGDSPKFFQLYLSKDWDFNKMVFDAVKSAGYKGIMLTVDALVSGY REANLRTNFTFPVPLDFFTRYVGAEGEGMSVAQMYANSAQKIGPADVAKIKEMSGLPVFV KGIMNAEDAYMAIGAGADGIVVSNHGGREIDTAPATIDMLPEITAAVNGRVPIILDSGVR RGSHVFKALALGADLVGIGRPFLYGLALGGAKGVESVINQINNEFKILMQLTGCKTVEDV KHADIRQINYTADNLPSNTDPSVRRAYPVTKENQMEGTQDAATGASKH >gi|260196035|gb|ACQN01000032.1| GENE 8 9761 - 11347 184 528 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 343 516 44 227 329 75 33 6e-13 MSFLKLLKINLIRAITLILATVLGAVLVAVGNSYLTNIGNSLQKQDINTFLRYMLLFFVV LVGGESIEFIASYLFAKQVQEYLHEVRERITRKLFLQKETTKITDVQNSLTNDLNMMNDN FLTPLYKIISSIFNIVFSIAIVFTYSWILVVLILILAVVMFVLPQLISKPLEKATVAVSE NNQAYLDTIEKWFKGIAILKRYNVKSKLFQVLAKSSNRLEKANVNRSKKVSQTSIFNNLV NGSAQVLIIFTAGLLIITKSMPFGAFFSIGNFSGVIFTGLFTVVSQITLIQSSKQLNKKI TANMATVDTEVASDSLADFATVSGQNLTLNFPNGEQLRFPDFEVKQGEKILLTGESGAGK STLFKLILDELTPSSGQITFKDKNGKFLKPNLNQIGYIPQDPVLFPGTIQENITLFNDSL NEKAKYWAEKVQLGTDLTKFPQGIKTKVDLDKNNLSGGQKQKVVLARTQVYESKLVLIDE GTSAIDSKNTQIILQNLLQSSATVIFIAHNLTPEMHKLFDRELKLTKV >gi|260196035|gb|ACQN01000032.1| GENE 9 11384 - 12880 1102 498 aa, chain - ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 496 1 510 513 370 39.0 1e-102 MSIIKVNNLSFSYDNSDKVIFSNLNLNLDSSWKLGLVGRNGRGKTTFLNLLRNELQGRGE ILTSITFSYFPAPIANPSNLVLYELQSQINFEVWQLERELNLMQLNPDLIWQPFNTLSGG EQTMILLAVSFVNQNSFALIDEPTNHLDAANRRQVANYLKKHKEGYIIVSHDRDFLNEVV NHVLAIENNEIHLYQGNYASYEATKDKRDKYNQDKNIKLKSEIASLKKSASQIKNFSEKS EKNKTAAAHKNEIHADINKGFYGHKAAKIMKRSITMQQRVNKKITEKEGLLTNIEQAPDL LMNFSPNYHQTLLELQHLSLKIANKSLFHDLNLIIKNHGIVALEGKNGSGKSTLLKFILN KSKAEASGKIILANGLKISYLPQTFSTYTGTLKEFSEKERIPYSDLLNNLKKMGFPRDDF TLKIEDMSMGQQKRVALAKSLVEEADFYLWDEPANYLDVFNQDQLIKLLKQTRPAMLLIE HDKYFIEQVADKKIKLTS >gi|260196035|gb|ACQN01000032.1| GENE 10 13075 - 13746 955 223 aa, chain - ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 212 1 213 217 254 61.0 8e-68 MTVIVLSGPIGAGKSSLTSILSKYLGTQPFYESVDNNPVLPLFYKDPKKYAFLLQIFFLN TRFHSIKAALTDDNNVLDRSIYEDSLFFHMNADIGRATKEEVATYDELLDSMMKELEHMP KKHPDLLVHIDVSYETMIKRIQKRGREFEQLDYDPTLEDYYKRLLSYYEPWYENYDYSPK IKIDGDKLDFMASEKDRQEVLDTIIAKLKEMDKLPEDWTPSHN >gi|260196035|gb|ACQN01000032.1| GENE 11 13771 - 14421 815 216 aa, chain - ## HITS:1 COG:SPy0121 KEGG:ns NR:ns ## COG: SPy0121 COG1428 # Protein_GI_number: 15674338 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Streptococcus pyogenes M1 GAS # 3 213 2 210 213 224 55.0 9e-59 MTVIVLSGPIGAGKSSLTSILAEHLGSNAFYEDVSKNPVLPLYYKDMKRYTFLLNTYLLN KRLAQINEALSENNPNVVLDRSIYEDALFFKMNADSGIADPTECDIYVDLVHNMMEDVPG NPHKKPDLLIYINVSLDTMLSRIKRRGREFEQLETDPSLKEYYARLRNYYEPWYENYSES PKMVIDGDKYNFVDNEDDRKAVLELIDNKLKELGNL >gi|260196035|gb|ACQN01000032.1| GENE 12 14575 - 15294 833 239 aa, chain - ## HITS:1 COG:SPy1399 KEGG:ns NR:ns ## COG: SPy1399 COG0363 # Protein_GI_number: 15675320 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Streptococcus pyogenes M1 GAS # 1 234 1 234 234 293 63.0 1e-79 MKIIVTKDKITGAAKAFEIFSREIKAGAKVLGLATGSSPIELYQNMVNSDLNFSNLTSIN LDEYVGLSPQNKQSYWYFMNEHLFKAKPFKHSYLPDGQTNNIAAEVEHYNQIIKENPIDI QLLGIGRNGHIAFNEPGTSFDSTTHEVKLTQSTIEANARFFDNIDDVPKSAICMGIASIM SAKKIVLLAYGEKKRWAIKNMIEGPITEEMPASILQKHPDVTIICDEAAAQDLDKKYLA >gi|260196035|gb|ACQN01000032.1| GENE 13 15392 - 16348 1277 318 aa, chain - ## HITS:1 COG:SP0848 KEGG:ns NR:ns ## COG: SP0848 COG1079 # Protein_GI_number: 15900735 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 318 1 318 318 403 69.0 1e-112 MNITTMLALIVSSTLVYSAPLIFTALGGAYSEHSGIVNVGLEGIMTIGAFSSIVFNLTFA STFKSATPWLGVIVAGICGLIFSLLHAVATVNWRADHIISGTVLNLMAPPLGVFLIKAMY DKGQTENISANFGYYNVPVLSNIPVIGDIFFKNTSAPAWVAIILSIVLWWVLYKTPFGLR LRSAGENPQAADTMGVNVYKMRYAGVLISGLLGGIGGGVFAQAISGNFSVSTIVGQGFMA LAAMIFGKWDPIGAMLSSLFFGFAQSLSIIGSQLPFISHVPSVYLQIAPYVITIVVLVAF FGKSVAPAADGQTYIKSK >gi|260196035|gb|ACQN01000032.1| GENE 14 16348 - 17493 1185 381 aa, chain - ## HITS:1 COG:L166804 KEGG:ns NR:ns ## COG: L166804 COG4603 # Protein_GI_number: 15673311 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Lactococcus lactis # 4 352 1 350 364 314 50.0 2e-85 MFKVNAETKKILVPLISIVAGFLVGAVIMLLWSYNPILAYTSMFSSALGNMNGLGETIRE ATPLIFTAIGFSIASSAGFFNIGLSGQAQGGWLAAIWIALANPHMPKYILLPYAIIVGTL VGAAIAGIAGVLRAYFGTNEVIVTIMVNYIVLYSCQYLMQNVMSDRLRVSTDATKTVTDN GSLRLDWLSNMFGGSRINAGIFLALIALVVFWFIMKKTVTGFEIKAVGLNPFASRYAGMS AKKNIIVSMLLSGAFAGLGGVVQGLGTYQNYFTQTTSVDIGFDGMSVSLLGGGTALGILL AALLFSILKIGGLGMQTLAGIPYEIVSIVIAAIIFFVAINYVIGLLFEKKKKNYNQPETI AKVSNNSVDGPAVKVGKGGEV >gi|260196035|gb|ACQN01000032.1| GENE 15 17493 - 19028 187 511 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 261 482 5 213 305 76 26 3e-13 MEKENTNIIEMRHIVKDFNGFKANNDINLTLRKGEILALLGENGAGKSTLMSILSGLLKP TSGEIYVRGKKVVIDGPNAAKDLKIGMVHQHFMLAKAFTVLENIILGHETKRGIKLDFKT ARKQIMALSEKYGLAIDPDAKIANITVAQQQRVEILKILYRGADILIFDEPTAVLTPQEI TEFINIMKNLRNEGKSIILITHKLNEIKQSADRVTVIRHGKSIGTVDVEGATDESLAEMM VGRHVNFNLPKKEAKVGKTVLSVKDLKVNEDRGTLAVKGLTFDVHAGEILGLAGIDGNGQ DELVEALTGLRHVKAGHFTIKGTDMTNKRPRKITELGVSHVPADRQKFGLILEMSLADNI ALQTYYQKPYSNHGIINHKAITEHAKKLIKKFDVRTKDENLKAGELSGGNQQKAIIAREL DRNSDLIIVFQPTRGLDVGAIEYIHKQLLAQRDAGKAVLLISYELDEIMQLSDRIIVLHN GQESGEVLPEKTSERELGLLMTGAHKKEGTN >gi|260196035|gb|ACQN01000032.1| GENE 16 19113 - 20174 1617 353 aa, chain - ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 13 349 18 349 350 269 50.0 7e-72 MGTGLVIATTGLVLTACQGKGAKTSSSSKANHSIALITDSNGVDDHSFNQAAWSGFQAYG KEHGLSQGKGGYQYFQSSSASDYEPNFTQAVNAGYQTIYGVGYMLSDSVKTAAAKYPKKN FVIIDDVITGKKNVVSATFKSNDSSYLAGVAAAYTTKTNTVGFIGGAKSSVIDLFEAGYI QGVKDTAKKLGKKITILDQYIGDFTSTDKAKSIAQSMYAKKADIVYQAAGSAGNGVFQEA KDLNSEKAVNDKVWVIGVDIDQASQGKYTAKGGQKSNFTLTSVLKGLNFAVKDIANKAYD GKFPGGKHLVYGLQHDGVSLTKGNLNSKAWKAVQQARQDIIDGKIKVATSPSK >gi|260196035|gb|ACQN01000032.1| GENE 17 20409 - 21482 1381 357 aa, chain - ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 1 352 1 348 350 259 46.0 5e-69 MNLKKVAILGVATLSAVAMTACSNKTTTNSNGKKNKGTVALVTDGHGVDDHSFQQSAWTG ILSYSKEHNLKRGTNGYQYFVTGSAANYETSLQEASKNYDLVFGVGYELKDAVSSIAKKN PNKKFAIIDETIKGQKNVVSANFLSNQASYLAGVAAAYETKTNVVGFIGGAHGDIVDLFD AGFTKGVNDTAKKLGKKITILNQYIGDFNSSDKAKAIAQTMYAKKADIVMHAAGGAGDGL FEEAKAINQTRKASDKVWAIGVDTDQSNLGNYKSKDGKKSNFVLTSVITGVNVAVKDIAD RTYEGKFPSGKDLIYGLDTNGVSITKGQISSKAWKASRTARTAIIDGKISVPKHPSK >gi|260196035|gb|ACQN01000032.1| GENE 18 21542 - 22621 1031 359 aa, chain - ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 6 355 3 349 350 256 47.0 7e-68 MQLKIKKVLSISILLSAVGLSMAACSNKSSSSNAKNADHSIALVTNNTGVDDHSFNQSAW EGLKRYGKAHDLLKGNGGYNYFESSSASDHIPNIEQAINAKYKTIVGVGYELGDAINTES KKHPKNNFIMIDNVINRKNVASATFKSNDASYLAGYAAAYTTKTNVVGFVGGAHGVILNL FDAGFAKGVADAAKEQNKKIKIINAYVGDFSSVDKAKAIAKAMYANKADVIYQVAATAGE GVFQEAKDINTKKAANDKVWVIGVDSDQSSLGVYKDKDGKKSNFTLTSTIKGIGKAVEDI ANKAYDGEFPGGKHFVYGLKGNGTYVVKGNMSDSAWAAVNKAKQNVIDGKVKVPTTPSN >gi|260196035|gb|ACQN01000032.1| GENE 19 22902 - 23828 891 308 aa, chain - ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 2 301 3 312 318 260 49.0 3e-69 MNLKKAVIALVTISIAGLMCACSTSKSNNATNYTPKELNVQFVPSVQGSKLQDRVKPLEK LLKKQLDIPVHVSVSTSNTALVEAMSSKKVDVGFIGGDTYVLAHKKKAADVLLRAMNEGY DEPSGKPNNKKMSHYRSMIVVKKGSKIKTWKDLKGKKIAVQSPSSTSGYVAPIGELYEKG LSIPKQTRMVQIQGHDQAILSVYNGDVDAACVFADARNIAAKDEPKVMTDTKPIYFTKWL PNDTISVRSDMSKTFRKKLSAAFKNIIKTKEGKNVLYNIYNHLGYVNAKDSDFDIVRKYQ KDANKASE >gi|260196035|gb|ACQN01000032.1| GENE 20 24075 - 25013 1184 312 aa, chain - ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 3 308 4 315 318 295 55.0 1e-79 MKFKKIVVGALALLTAAVATACSSNNSSKGSSSTGYTPKKVLNVQFVPSSQASTLEAKAK PLESLLKKELGIPVKVTVSTSNNALVEAMSSHQVDVGFLPPDAYVLAHKRKIADVLLQAE RYGYDEPSGKMNKTLMDKYRAMIVVKKGSKIKSWKDLKGKKIAVQESSSTSGYVYPVAEL YKKGLNVVKDSTLTQVQGHDQAVLAVYNGDVDAAFVFADARNIAAKDTPQVMKDVVPIYF TKWIPNDTISVRSDMSQAYRTKLKKAFKNLMKTEKGKKIMSSIYSHMGYKDSKDSNFDVI RDYEKTIEKVTK >gi|260196035|gb|ACQN01000032.1| GENE 21 25162 - 26247 921 361 aa, chain - ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 97 359 80 344 344 167 40.0 4e-41 MSIVDQLVDKLNNNPAFVFTSVILVIISTLFLYLWIKEPRRLITGNIFALVVLISGFWLS ILIFKLTPPAIHYLWSLAFVAGILLVLLLSSFAWLFLLWNAYFVWKYESHTLPNMLTLFL GFALIGLWIYQKFTHWLHLPPYLAPILGLAPTIATYLTIVMLSFIINVFLYQFYPKNHRE NYLIVLGAGLINGTKISTLLANRINTAIKYAKKVKKKTGNWPKIIMSGGQGPDEELPEAA AMAEYAIKAGIPREIIILENQSTTTLENMTFSKKIIEKDTKNKPYTCKFFSNNYHIFRAA LLAKKAKLNANGVGAPTRLYYLPNALLREFAGIFVLNKKRHIITISLITLIGILSVLFKL F >gi|260196035|gb|ACQN01000032.1| GENE 22 26320 - 27477 1088 385 aa, chain - ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 381 1 376 379 243 44.0 3e-64 MHFIGELILILLITTLLGQLFTRLNLPAVIGQLLSGILLGPAILGLIKTSSTITLFSELG VIFLMFLAGLESDLELLKKYFKLSFSVAFIGVILPVIFMTIASQLFGMKFLEALFIGIVF AATSVSISVEVLHDANQLHTKAGTAILGAAVVDDILAVVVLSLFTSFSHEGGNSGLTNNL VLNLIIEVIYFVIVWLIFKFIAPYFMKYAERIEVNYSVVIASLILALGLAWAADFTGLSA VVGAFFGGLAIRQTPQYKEVNSAVSAIGYSVFIPVFFADIGLSMTFSSFTQDLIFIIVMT VLALLSKFWAGKYTCELFGFNKIDANIVGAGMISRGEVALIVAQIGIAHHLFPEDIYSSL ILVIIVTTVLSPFILNNYLKQKATV >gi|260196035|gb|ACQN01000032.1| GENE 23 27580 - 29436 2055 618 aa, chain - ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 592 1 590 593 454 43.0 1e-127 MKHQWKLIVALILGFIGAILDFVMHMPHLTATIIDIAALLMALSMLKEMIMDLKAGHWGV DILAIIAVISTVAVNEFWAAWMILVMLTGGESLEDYATSQADKELRSLLSNNPRLANKVV DGVVSEVKVDDLKIGDHVLVKPGSQVPVDGIILTGSSSFDESSLTGESVPVEKGIDDTIM SGSINGDSAITMQVTKLAKDSEYQTIVALVQSSEAAPAKFVKMADRYAVPFTIISLIIGI SAWISSGDPTRFAQVMVVASPCPLLIAAPVALVSGMSSMSKNHIIVKSGTVLEKLSRAKT FAFDKTGTLTRNQLVIDQIVPEKGFNKEELQIFAASVEQASSHIIATSLVKATPKAELHS VTDLEEVTGQGVRGKVADKIVCVGKLSFVAPDKNLKNINSTAIYISIDNKFGGYITFADQ IRPETPDTISSLRAQGAQHIMMLTGDNSEVAQKVAAVAGVDDVRSSLLPAEKIAAVKGIK SENRPVVMTGDGVNDAPSLMAADVGIAMGAKGATAASESADAVIMVNDLSKVSDAVAIAK HTMKVANIDVLTAISIVILIEIVAFTGIIPAMAGAILQEVVDLITICLALLAKTTPKIMR NKKTTNLQKKTELRKMFS >gi|260196035|gb|ACQN01000032.1| GENE 24 29567 - 30034 356 155 aa, chain - ## HITS:1 COG:L110441 KEGG:ns NR:ns ## COG: L110441 COG0517 # Protein_GI_number: 15673261 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Lactococcus lactis # 1 155 1 152 153 88 34.0 6e-18 MFSPTIQHLIEQKSGAFLIPASKIAFVQEDAPLYHAFLILTKVKYAKIPVLNHKQQVVGL LSLSMITEKMLTDSDISIEPLSYMKVSEVMQTKFTTINFVNTTMEAQLHLLINNPFIPVV NDSGVFQGLLTRREWIKAFNYISHELDQKYNITEK >gi|260196035|gb|ACQN01000032.1| GENE 25 31068 - 31943 764 291 aa, chain - ## HITS:1 COG:CAC1588 KEGG:ns NR:ns ## COG: CAC1588 COG0583 # Protein_GI_number: 15894866 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 288 1 286 293 166 32.0 6e-41 MNLQDLKYFHELVNQKSYTKTADSFGVTQPTITAAIKRLETEFGTTFFIRDQSHKSVNVT NIGMQFDEHVKKILKEIEVAQTEINQHLSEDILFGLPPIIGDEYFPKIAGKLLKANILKH LNVQEHGSHELKQMLLDGQINIALLGTMQVANNPDLKLTVLKKFPMEIIVNKNHPLAKKK GIFFKDLENENFIDLTNDFIHSAALKQLKEANQINIKTIYNSPDVTIVKSLIEQGLGISL LTSLSIENNSNLVALPLLDKNQPEFILVAAARKNYLFKTQEQKLWDILEKS >gi|260196035|gb|ACQN01000032.1| GENE 26 32079 - 33701 1995 540 aa, chain + ## HITS:1 COG:L121483 KEGG:ns NR:ns ## COG: L121483 COG0281 # Protein_GI_number: 15672882 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Lactococcus lactis # 1 540 1 540 540 650 58.0 0 MKTMDIIHNPFKNKGTAFTEEERRKLGLIGTLPGSVQTIEQQAKRVYDQYKIRPDGMQKR KFLMEVFNTNRTLFYYVLSHHIEELLPIVYDPVIAPAIEQYSEIFMLPQEAAFLSIEHPE DIEESLKNAADGRDIRLIVVTDAEGILGIGDWGVNGVNISVGKLMIYTAAAGINPSQVLP VSLDVGTNNQELIHDPLYLGLKKPRVTGKEYYDMVDKFVASARKLFPDVYIHFEDFGRDN ATKILNKYRNEIPVFNDDVQGTGIVSLAGVLGALEISGQKITDQRFLTFGAGTAGMGIAN LLCKELQLQGLSEEEAKKHFYLVDKQGLLFDDTEGLTPEQKPFTRSRDEFDNSEELTNLE AVIKAVHPTVMIGTSTTPGAFTEGAIREMAAHTERPIIFPISNPTRLIEAMPKDLLEWTD GKALIATGIPVEDVEYKGVSYAIGQANNALIYPGVGLGVLASKARLVNDQMISAAAHSLG GIVDTTKPGAAVLPPVSKIHEFTKTVAKAVAQSAIDQGLADPDITDAEKAIEAIKWEAKY >gi|260196035|gb|ACQN01000032.1| GENE 27 33798 - 34943 958 381 aa, chain + ## HITS:1 COG:no KEGG:LBA1927 NR:ns ## KEGG: LBA1927 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 39 380 35 378 378 439 64.0 1e-121 MLKWLKKVFRIFFLCLILLGSFYGAYYLYQRYERYKTYETLLAKRPTLKKAKDGTSISAA WYKEKEFEKKLSKKYPWIYTLSFDTPALTYVGRNIAIPGLVSTKAYDFSKKKMDLATNMT PQGIAFADKYMLISAYDGLHKHNSVIWVLNKQTGKYIKTLQIKGRPHLGGIAYDPVAKNI WVTSSLDGESALASFSLKELKNNKGKRPVKYNNQMALPGISRASTVTYFDNQLFVGFFNM YEKGTVSGYTIARSGNFKGSITTDEIKASTGSAAWSTATGSTSMDKQIQGIAFYQDKIFL SQSYGSQNSKLYIFPVSALNSLDEKNAERVIELPPYLEQITVENGQLICLFESGSKNYAR SQIMIMDRTLSLNINALFSSY >gi|260196035|gb|ACQN01000032.1| GENE 28 34972 - 35271 280 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282933290|ref|ZP_06338676.1| ## NR: gi|282933290|ref|ZP_06338676.1| hypothetical protein HMPREF0886_1312 [Lactobacillus jensenii 208-1] # 1 99 1 99 99 157 100.0 2e-37 MDKTVKKKVLFLTKLSGWLCFFPIAFFWELYLWGYEPSFFLLGMMGIILVFALVLLLSDV TELCYNRNRMRRWMIFAAVFVSVLVAVPLYFAMRKLPKK >gi|260196035|gb|ACQN01000032.1| GENE 29 35340 - 35525 145 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851640|ref|ZP_05557028.1| ## NR: gi|256851640|ref|ZP_05557028.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 61 1 61 61 103 100.0 4e-21 MQNVRGELMKKIEETEKKPSKGKAITSFVLRTIFYFVVLLALIYLYEYSGIDSVHFIYNE F >gi|260196035|gb|ACQN01000032.1| GENE 30 35541 - 37049 1721 502 aa, chain + ## HITS:1 COG:SP2176 KEGG:ns NR:ns ## COG: SP2176 COG1020 # Protein_GI_number: 15901986 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 2 501 6 514 516 468 47.0 1e-132 MITNIIKRIDQIAIEEPDRIAYDYLGTTNTYGELKQRSDAWAYKITNLRIENKAPIMIWG GQTFEMVACFLGCVKAGHAYISIASYSNAERLTMIQDVSKSPLVIAIDELPNIDLRDLQV LKPEEVENGKFSVNEDNFVKDDENYYIIFTSGTTGKPKGVQISHKNLLSFVNWELSDYAL PENPSFLAQAPYSFDLSVMSLYPALVSAGKLVVLPHDVTENLGQLFTTLPKMQFNVWVST PSFAQMCFLDPTFNGDHHKELTHFLFCGEELTHKCAETLRKKFPNSKIFNTYGPTEATVA VTQVEINDEILSKYDRLPIGKVKEDTEITIDESKGEKPGQGELIISGPSVSKGYLHNPEK TAAAFFKTDDKASYRTGDAGFFDGDMLFYRGRIDFQIKFNGYRIELEEINFYLSKNDLVR YGVVAPKYDKEHKVKQLIAQIELNDGVKDKYSEAEITKLIREDLAKNVMPYMIPQRFVYR EDMPISQNGKVDIKAVIKEVNA >gi|260196035|gb|ACQN01000032.1| GENE 31 37046 - 38275 891 409 aa, chain + ## HITS:1 COG:SPy1311 KEGG:ns NR:ns ## COG: SPy1311 COG1696 # Protein_GI_number: 15675260 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pyogenes M1 GAS # 4 408 11 418 418 353 48.0 3e-97 MINLQPYSNPQYFVLLLGLLLPLIIGLYFGRRFKVYEAIFSIAFLVLTFGGDKWQQGVTL LGYIIYQFLVTFGFQKYVKNGGKKTGIFSLFVILAIIPLTMVKVAPVIPSKEPITIGFLG ISYLTFKTVQVIMELRDGTIKEVDPVMYARFLLFFPVISSGPIDRYRRFVKDYNEAPSRE EYLNNLELAVKYLFQGFLYKFVLGWLFGSFWLPQLTQAAIINGKINGGLHLSWALLGYMY CYSMYLFFDFAGYSLFAVSISYFMGIRTPMNFNKPFSSPNIKEFWNRWHMTLSFWFRDFI FMRFTFFAMKKKLFKNRIRLSQVAYLINFLIMGFWHGVTWYYIVYGIFHACAIIINDYWL RFKRKHKKQLPSNKYTKAWAIFITFNVVCFSFLIFSGFLDTLWFHPMHH >gi|260196035|gb|ACQN01000032.1| GENE 32 38305 - 38544 447 79 aa, chain + ## HITS:1 COG:SP2174 KEGG:ns NR:ns ## COG: SP2174 COG0236 # Protein_GI_number: 15901984 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 78 1 78 79 65 46.0 2e-11 MDAKEVVLNILEDLTGEDLSDQMDENIFDNGLLDSLATVQMLLNLQEETGIQVPVSEFNR EEWDTPNKIVAKVESLEND >gi|260196035|gb|ACQN01000032.1| GENE 33 38537 - 39853 1365 438 aa, chain + ## HITS:1 COG:SPy1309 KEGG:ns NR:ns ## COG: SPy1309 COG3966 # Protein_GI_number: 15675258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Streptococcus pyogenes M1 GAS # 5 417 3 416 416 346 44.0 4e-95 MTNKRRLWQIFGPVICAVLLLIAVFLFPWDRTYSANSIFEAATSQSDRIFKGQRMKQEAL SGKYVPFFGSSELSRMDSLHPSVLAYKYNRSYTPFLLGGAESQSLAHFYGMQGIKSQLTN KKAVVIISPQWFTKKGQDKNAFSLYYSNLQAIDFLLDAKDSVATRYAARRLLQMPSGKSS ETVKYALMTVASGQPLSETQRLILQMRRRILVNEDTFFSTFQLPDRVNKIKMQAKYLPDK YTIKGLTEVANAEGSLHTTNNKFAIDNTFFKTRLNKKELKKLKGSQKHFDYTKSVEYSDF ELMLKQFAHEHTDVLFIIPPINAKWAKYTHLSDKMYQKSVKKIKYQLVKQGFNNITDLSK DGGKKYFMQDTIHLGWNGWIAVDKSVKPFMQKSYSNVNYKIDNYFFTKSWQNRTKVENIK VNKASNTNVVPTTGSKSK >gi|260196035|gb|ACQN01000032.1| GENE 34 39853 - 40785 582 310 aa, chain + ## HITS:1 COG:lin0544 KEGG:ns NR:ns ## COG: lin0544 COG1680 # Protein_GI_number: 16799619 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 5 288 95 377 398 88 27.0 2e-17 MRQSLSNIGFEGSVLVIKNGKTYLNYATANKTDTSYLINSVQKFITGAAIMKAVQEGKLS LNDTLAKFYPTVPGANKVTILNLLQMTSGLSIDKALGTKPFVSDKKNLEYAIKNTKFDEN MLGKVSYSTLNYVFLSNILSNIYNTSYEKLITKSFINKLKLKHTAFSWANNKTLKKINFV LGHQLSSNGKYITQKLDLDEIHGELGAGSLLMDNYDLSKCVKYILTGNYLSKSSIKALYG MNNLANTSYSGGFYIHNTYLASNGGDNGYYTFLRTSNNAKTIIIVQTNRARGNFFELRSV MDQLIIALQK >gi|260196035|gb|ACQN01000032.1| GENE 35 40834 - 41844 1260 336 aa, chain - ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 7 334 1 328 328 390 57.0 1e-108 MKGSFLVMRVLVTGGAGYIGSHTVNALLEDGNDVVVLDNLYTGHRQAVNKKAKFYHGDVL DTNLVTNILMNEKIDAVIHFAAYLLVGESVQEPLKYYHNNVSGMISLLKAMKTAGVKNLV FSSSAATYGVPKDLPIKETAPTNPINPYGETKLMMEKIMRWTDQADGIKSIALRYFNVAG ASLDASIGEDHAPETHLVPNILLAAKNGTGNFTIFGNDYNTPDGTNVRDYVHVVDLAQAH VLALHYVVKNQKSDIFNLGSANGFSNLEILQSAIKVTGEDIPYTIGPRRGGDPDSLVADS TKARTVLNWQPQHDNIDDIIASAWKWVQIHPNGFSE >gi|260196035|gb|ACQN01000032.1| GENE 36 42112 - 43296 1198 394 aa, chain - ## HITS:1 COG:BS_yttB KEGG:ns NR:ns ## COG: BS_yttB COG0477 # Protein_GI_number: 16080087 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 8 362 2 355 397 202 33.0 1e-51 MEKTNQDPVKIKFLLLGSLIYNIGISFIWPLTTIYMHQYLHQTLTIAAIVLLLYYGTTLL GNAIGGAIFDKITPFKTILFGAIITSLCALAMFLIPAWPFYPIFLVIYGIGDGIVTTAIN SIATTMKTHASSFFFNLLYMTRNLGLVIGSLLVGIITFLGPKAWFASAFTFFVVFTILLL IFFRKLDHANLVQAAPTPTHQNISTKKNFWIIISLVACMFFCWLAYEQWDSNLSVHMLNH GISTAEYSFCWTLNSALITISQPILTYFDGYLSKKINARLYIGFVLFASSFLILIGANNY WNYLLAMFILTCGEALAFPAVSAYVHAHAPKSQAGRYQGLVLAGTSAGRALAALFGAILL NYVTMPVLLFILASLIIIALINFILFNSLRKKDA >gi|260196035|gb|ACQN01000032.1| GENE 37 43316 - 44500 707 394 aa, chain - ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 7 371 4 365 393 236 36.0 4e-62 MKERIDPVKLSYLLLGSLVANTGISFIWPLTTIYLTTYLHESLTMAGIVLFLNSAFTLLG NLLGGYLFDRWHPYQTIASGVFIAAISSLALIFWHGWPFYAIFLLTLGIGNGIIVTSLNS IATFMKSHNPSYIFNCLYFTQNLGLVFGSLIVGFVLPFGITYLFILAFLMFAVFEAIVLT KYYGLNLVHGHNNRAKFNKVAKEHMNKAKFYQILAILNCVLCVWIAYEQWNSNISTYMLS INLSVQSYSLLWTLNAVLIVLFQPFLTHFDDFLTAHLKGRLYLGFTLFAGAFLLLLFAHS WAIFAISMALLTTGEVLCLPAVSTYVNDRADDSEKGYYQGIVQSVTSAGRAFGPLIGALI IDNSSYLILFIFCTLIVIISIILFILSNQLKAHN >gi|260196035|gb|ACQN01000032.1| GENE 38 44542 - 44772 242 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851631|ref|ZP_05557019.1| ## NR: gi|256851631|ref|ZP_05557019.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 76 4 79 79 127 100.0 3e-28 MTKKVVLNENVNRLVDEYIRRTGISFDDLTNKALKCYIVNKLSSKDVKKTLKRKDSDTYP IDDILKNGFGNWINEQ >gi|260196035|gb|ACQN01000032.1| GENE 39 44899 - 45057 125 52 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297205237|ref|ZP_06922633.1| ## NR: gi|297205237|ref|ZP_06922633.1| possible cellobiose-specific PTS IIC [Lactobacillus jensenii JV-V16] # 1 52 1 52 459 94 100.0 1e-18 MEERLVKVLLKLREKSFFRAVQRTFAMLAPFVLIAAIFQGIYNSFLLPNSIF >gi|260196035|gb|ACQN01000032.1| GENE 40 45069 - 46268 1048 399 aa, chain + ## HITS:1 COG:lin2906 KEGG:ns NR:ns ## COG: lin2906 COG1455 # Protein_GI_number: 16801965 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 13 372 81 446 450 109 25.0 8e-24 MLSHAAFRSLRFVFSGVSWAIFGTFGVFAAYYMALYTARIYDKDSKLAGISAIFVLFFIR EPRQNFDLTSLNLKMLSVKTMLWALIIGYIVGQIFHLLGAKYQDHKYEHVAGIKERALAS FKPIVASVGLAIVTGTLINFLQINVAQSSYITGVASSVITSNNLLISIPLVTFSIFLHWL GIGTPIMAIFESTNSGAATANFNYALTHGSSWNVPYKYLGSSLVQSYGTLSGTAFVFSLI VVILLIDKNKYNKVVAKASLFPVMFNSIYGFWVAFPIYLNPLILIPLLLVPLANMVASSF AIFLHLVPVSVYPVLSGTPGVLIPYIGTNGSWQALLLTALLLVMDVFIVMPFYKIHMNVE AKLEELDKQRDAGLLPLKKQNKFVKSKEKNNEKITAEQR >gi|260196035|gb|ACQN01000032.1| GENE 41 46240 - 47142 733 300 aa, chain + ## HITS:1 COG:lin2722 KEGG:ns NR:ns ## COG: lin2722 COG4814 # Protein_GI_number: 16801783 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 17 268 5 270 291 101 26.0 2e-21 MKRLRLNKDNIWLVAALIVIIMTAIPTIIWMQRSNKDRAQRHNSQVSPVIMVPGSSATTE RFNELVNLLNKNTQKKHSLLKVKVSTSGKLTYSGSIKNGDTEPIIVIGFQNNHDGYSNIK KQAGWLNVAFKSLSEQYKFNNFKAFGHSNGGLIWTYWLEHYYSDYSSQIKIKTLMTLGSP YNFTEKNINNKTQMLSDFIKYKSRLPKTLTVYSISGGENYESDGLVPENSVEAAKYVFQE QVAHFTAMTVTGSDAQHSSLPQNKQVVQVIQEYLLDKERNNNPQNRTNRRRTLLNRDNNR >gi|260196035|gb|ACQN01000032.1| GENE 42 47359 - 49398 1334 679 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 21 642 144 780 815 518 44 1e-146 MTYFDNDFDNLFNELNKSFFNDDNGNTRYYFSTNSTNPQAVQQIEKPKQNDNKIGRDLVK EAKNKKFDPVIGRDDQINAVIEILSRRKKNNPVLIGPAGVGKTSIVEGLAQRIASGDVPD KLCKMHIYELNINDMVAGSSLRGSFEEKIKKVIDIAQKEPNTILFIDELHNIVGAGSTDS ENNSGDAANILKPALASGDLKLIGATTTSEYRQIEKDPALARRFQAVDVPEPSSEVTIKI LQGLKKKYEEFHHVKYSDDSLKLAVELSQRYIQGRYLPDKAIDLMDEAGAKKSLGVDSTD EDSLKQRIHDYQLIKDEAAKAEDYNKASEYKDKISKLEEQLKHTDKANEPEVTAKDIYAL IEQKTKIPMSELHADEAKKNLDLAKKLKSVVIDQDKAIDIITDAIARKQVFKDTNRPTGS FLLTGPTGVGKTELAKQLAKELFGGSDHLIRLDMSEYQDQMAVNKLIGSAPGYVGYGEGG QLTEKVRHEPYSLILLDEIEKANPQVFNALLQILDDGRLTDAQGRTVSFKDTIIIMTSNA GFSDKVLKDGEVDKDALMKALELYFRPEFLNRLDAIVPFNHLSSKDMTKICGLYLQKMEN TLSKRKIKMTISDEAKKVLAKRGYDKKFGARPLRRVMEQDLQTPAAKLIMTEPDLQAVDF TADEKHLYLNGKPIVDLVA >gi|260196035|gb|ACQN01000032.1| GENE 43 49487 - 50137 569 216 aa, chain + ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 3 215 7 213 215 139 33.0 5e-33 MQIKNIQAFAHKYLDNDTTGHDYWHGERVANLAKKLFLQDYPKAQEKQLDLLLIMGYLHD TIDEKICANPDEVTSEMKNLLKNENLKQDEISSILFVLNHMSYSKNIEHHFQLPMIGQYV QDADRIEALGAIGIARAFAFGGSHNQKIYDPAIKPQTLKSHKQYRNHEATTINHFYEKLF NLEQTMNTPAGRKIAQERTIYMHKFVDQFLKEWEGK >gi|260196035|gb|ACQN01000032.1| GENE 44 50217 - 50948 801 243 aa, chain + ## HITS:1 COG:FN0505 KEGG:ns NR:ns ## COG: FN0505 COG2071 # Protein_GI_number: 19703840 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Fusobacterium nucleatum # 3 221 4 222 243 244 54.0 1e-64 MDKPIIGISGSEIIDEGGMFPGYRRSYVNEDYVDSVVKNGGIPFIIPFTENDEVIKEQLD HVQGLILSGGHDVDPHLYNEEPLQKLGTTWPERDHFDMLLLKLAEEKGIPVLGICRGFQI INVFHGGSLYQDLSYRQGVTLKHNQGSRPDLPTHSVDVISGTHLAEILAKDKILVNSFHH LLIKDLASDLVASAKASDGVIEGLETKNGQVIGVQWHPEMLHNNEHVSYQNNLFKNLIIK ANN >gi|260196035|gb|ACQN01000032.1| GENE 45 50962 - 52371 1557 469 aa, chain + ## HITS:1 COG:FN0504 KEGG:ns NR:ns ## COG: FN0504 COG0531 # Protein_GI_number: 19703839 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Fusobacterium nucleatum # 10 460 1 453 453 364 53.0 1e-100 MNDKRESDKLGFWSIVLLAINSIIGSGIFLTPGSVVSRVGSKALLVYLIAASFAAILAIT FAAAAKYVTKSGAAYAYSKAAFGENVGFYMGVLRYFSASVAWGVMAVAVIKSTISIFGGD PNSFQNVSIGFVVLMLLIWIINLFGQSVVKYIMNLSTIGKLLALGLVIFVGAFLLLSTGE NHFSEIDTLQIAGKNVIPAVTTSSFVMAIVSAFYAFTGFESIASGSEDMKNPAKNLPRAI PLAILIIALVYIGVVAVAMVLNPRELLETKQVVAVAAIFSSPVLRAIILVGALVSMFGIN IASSFHAPRILEAMARENQFPKWLAKRTKRNFPARTFLITLILAVLVPMAFHYSTDNLII LSATVRFLGFIVVPLGVIRFYLGKNVEPILTANKNKITDLIFPIFSILITLFLLYKYDWA AEFSVTVNGVTSLNWFAIGALAFGAVILPAILFILTKNERKKAEAMLEK >gi|260196035|gb|ACQN01000032.1| GENE 46 52505 - 53413 731 302 aa, chain + ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 2 290 10 299 306 164 35.0 2e-40 MNQKVKWSILAAIACVFWGISGLFGKNLFNSNPLITPIFLTKIRMVISGIIILLFAKITN QKPFTIWKNKKDAVTVSAYGLFGLVPVQLFYFMVVKEANASIATVLQFIGPFFVIFWMLI TKQQVYRNLDLISATLAFLGVFLLATHGNLQTLTLSPGALFFGMLSAVGVATNTLIPRRI ITSYPTVVITGWGLLIAGIALFIFDPSVPKISITWGMIIDLAGVIVIGTLIPFQWMAGAL RYISPSTASLLDAFEPISAMIGSVILFNLILSPMDIIGSVMIIGAVLLVSLNPPRLTKKA HR >gi|260196035|gb|ACQN01000032.1| GENE 47 53433 - 54425 962 330 aa, chain - ## HITS:1 COG:SA1172 KEGG:ns NR:ns ## COG: SA1172 COG0516 # Protein_GI_number: 15926918 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Staphylococcus aureus N315 # 7 329 1 323 325 488 70.0 1e-138 MSNYFSMEAFDYNDIQLVPNKCIIKSRKEADTSINFGNRTFKIPVVPANMQSVINEELAI WLAKNDYYYVMHRFEPQKRASFIKMMHDKKLFASISVGIKDDEYDFIDNLVKENLIPEYI TIDVAHGHSDYVIKMIKYIKTKMPSSFLTAGNVATPEAVRELENAGADATKVGVGPGRAC ITKLKTGFGTGGWQLAALRMCSKAASKPIIADGGIRHNGDIAKSVRFGASMVMIGSMLAG HEESPGNVIKINGKVYKQYWGSASEVQKGGHHNVEGKQLLVPYRGSIKDTLKEMQEDLQS AISYAGGKNLQSIRLVDYVIVKSSIMNGDI >gi|260196035|gb|ACQN01000032.1| GENE 48 54609 - 55901 1908 430 aa, chain + ## HITS:1 COG:SPy0160 KEGG:ns NR:ns ## COG: SPy0160 COG0104 # Protein_GI_number: 15674367 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pyogenes M1 GAS # 1 427 1 427 430 595 65.0 1e-170 MTVIAVVGSQWGDEGKGKITDYLGQEAELTVRSNGGNNAGHTIVFNGHTFKMRLIPSGIF TARKGAVIGNGVVINPEVLLGEIKYLQEHGVDTSSLKISNRAHIIMPYNILQDVYQEEAK GANKVGTTKNGIGPTYMDKASRVGIRMCDLLEKDTFEEKLRFNLTEKNALFEKVYGKEGL KFEEIFDKYYQYGQELKKYVTDTSVYVNEAVEAGDKVLFEGAQGVMLDIDEGTYPYVTSS NSIAGGIATGIGMGPNKIDTVLGICKAYTTRVGEGPFPTELTDEIGNYIRETGHEYGTVT GRPRRVGWFDSVALRHAKRVSGIDCLSLNLLDVFTGLKTIKIATHYELDGNKIDYYPASL KELERCKPVYEELPGWDNDITKAKSLTDLPENARNFLRKVEELVGVPLVTVSVGPDREQT IVIKDLWDVD >gi|260196035|gb|ACQN01000032.1| GENE 49 55902 - 57197 1538 431 aa, chain + ## HITS:1 COG:SPy0036 KEGG:ns NR:ns ## COG: SPy0036 COG0015 # Protein_GI_number: 15674278 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Streptococcus pyogenes M1 GAS # 1 430 1 430 430 578 66.0 1e-165 MIERYTRPEMGKIWTDKNKYQAWLEVEIAANNAWSEIGEVPADDAEKICKNAKFTAERVA ELENITHHDVVAFTRTVSESLGPEKKWVHFGLTSTDVVDTAQGYLLKQANEILRKDLVMV KETIAKRAVEHKDTVMMGRTHGVQAEPTTFGLKLARWYAEIKRDIERFEHAARGVESGKI SGAVGNFANVPPEVETSVLKQLGLNQQEITSQVLPRDLHAEYIATLALLATSIENWATEI RSLQRSEIHEVEEHFRAGQKGSSAMPHKRNPIGSENLCGLARVVRGHMITAYENVSLWHE RDISHSSAERVILPDTTILLDYMLNRFNRILANLDVFPETMLKNMNRTYGLVYSQRLLLK LIDETSLSREAAYDMVQKLTAESWDKQKQFKDLVLNSSIIDYLSRADIEDAFDYHYYLKH VDDIFKKVGLE Prediction of potential genes in microbial genomes Time: Wed May 25 14:10:49 2011 Seq name: gi|260196034|gb|ACQN01000033.1| Lactobacillus jensenii 115-3-CHN cont1.33, whole genome shotgun sequence Length of sequence - 19856 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 5, operones - 3 average op.length - 4.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 4 - 690 735 ## COG3442 Predicted glutamine amidotransferase 2 1 Op 2 . - CDS 744 - 1556 857 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 1664 - 1723 5.2 + Prom 1595 - 1654 11.3 3 2 Op 1 . + CDS 1688 - 3184 1666 ## COG0554 Glycerol kinase 4 2 Op 2 . + CDS 3197 - 3961 813 ## COG2365 Protein tyrosine/serine phosphatase 5 2 Op 3 3/0.000 + CDS 3961 - 4911 1006 ## COG1609 Transcriptional regulators + Term 4950 - 4997 8.6 + Prom 4937 - 4996 5.4 6 3 Op 1 7/0.000 + CDS 5055 - 6698 1518 ## COG0366 Glycosidases 7 3 Op 2 3/0.000 + CDS 6700 - 8406 1602 ## COG0366 Glycosidases + Prom 8442 - 8501 5.8 8 3 Op 3 11/0.000 + CDS 8524 - 10791 2304 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 9 3 Op 4 3/0.000 + CDS 10776 - 11447 848 ## COG0637 Predicted phosphatase/phosphohexomutase 10 3 Op 5 3/0.000 + CDS 11453 - 12562 1275 ## COG3839 ABC-type sugar transport systems, ATPase components 11 3 Op 6 3/0.000 + CDS 12592 - 14181 1348 ## COG0366 Glycosidases 12 3 Op 7 19/0.000 + CDS 14203 - 15414 1752 ## COG2182 Maltose-binding periplasmic proteins/domains + Term 15429 - 15464 1.5 13 3 Op 8 20/0.000 + CDS 15474 - 16832 1404 ## COG1175 ABC-type sugar transport systems, permease components 14 3 Op 9 . + CDS 16835 - 17692 888 ## COG3833 ABC-type maltose transport systems, permease component + Term 17710 - 17757 7.0 15 4 Tu 1 . - CDS 17748 - 18578 551 ## LBA1934 transcriptional regulator - Prom 18627 - 18686 4.4 + Prom 18408 - 18467 6.7 16 5 Tu 1 . + CDS 18675 - 19854 949 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|260196034|gb|ACQN01000033.1| GENE 1 4 - 690 735 228 aa, chain - ## HITS:1 COG:SPy1034 KEGG:ns NR:ns ## COG: SPy1034 COG3442 # Protein_GI_number: 15675031 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 6 213 18 226 263 180 46.0 2e-45 MTDKLIKIAYLYEDLMNTYGDSGDVKILSFLLKRRGYDTQVDNISLGDEFNAFDYDFVFF GGGQDFEQTVVAKDIPRHKETLEKYINAGHPMLCICGGYQFMGDYYKTNSGVTIKGLGIF PLHTVFKSDKRMIGDTKYMTEWGEVVAFENHSGQTYFDNTDKLHPLGRMIEGYGNNPQDK AEGLRYRNFIGSYSHGPLLKNVNVANAIVEMILNWHKERVTNKESITE >gi|260196034|gb|ACQN01000033.1| GENE 2 744 - 1556 857 270 aa, chain - ## HITS:1 COG:PM1261 KEGG:ns NR:ns ## COG: PM1261 COG0351 # Protein_GI_number: 15603126 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Pasteurella multocida # 7 263 6 263 273 209 41.0 4e-54 MSKEEIIALTIAGNDSDGSAGMPADLHAFYARKVYGMGLMTAAVAGNTTGIYAAQIMPVD FIQKQFEVLNDDFSIKALKTGMLANKDIINCVADNIEKYNMGKVVIDPVIITKHGNSLLD NDAYQTFLNRLLPLADIITPNYYEQKKLTELSLDSEAEILAGAKKLQALGAKNVLMKGKH TGDSSDVVDILLTEDGQVHKFSKPYYKTERVNGTGDTLSAVIAAELAKGTNLIEAVKIAK DFTYEAISHPIIVGSKWGPINHWVAEDNLN >gi|260196034|gb|ACQN01000033.1| GENE 3 1688 - 3184 1666 498 aa, chain + ## HITS:1 COG:SPy1684 KEGG:ns NR:ns ## COG: SPy1684 COG0554 # Protein_GI_number: 15675545 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 3 498 4 499 508 731 71.0 0 MAESYIMAIDEGTTSTRAIIFNHAGEKVYTAQKEFPQLFPEPGWVEHDPEQIWNAVQTTV ASAFINSQIRPNQISAIGITNQRETTVIWDRETGRPVYNAIVWQSRQTTALAEELKNKGY SNLIKSKTGLIIDPYFSATKIRWILDHVKNGQKRAENGELLFGTIDTWLVWKLTNGAVHV TDYTNASRTMLFNIHDLAWDEEILKILDIPKQMLPEVKSNSEIYGQTTPFEFFGGKVPIA GMAGDQQAALFGQLALSPGMVKNTYGTGSFIVMNTGTKPTSSNNNLLTTIAYKVNGKVVY ALEGSVFVAGSAIQWLRDSVKLIKSSPESEQAARESTSENEVYVVPAFTGLGAPYWDAEA RGAIFGITRGTTDKDLIKATLQSLAYQTRDVVDTMQHDSGIEIPALRVDGGASNNDYLMQ FQADILGTKIERAATLETTGLGAAFLAGLSVGYWQDINELKQIAKIGQTFNSEMTNIERE KLYTGWQKAVKATQFFAH >gi|260196034|gb|ACQN01000033.1| GENE 4 3197 - 3961 813 254 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 4 251 46 297 298 92 30.0 5e-19 MRLIKLDGATNFRDLGGYVGVDNKKVRFGKIYRADSLSALSRDDIKKLNELNIVYDCDLR SYYEQEMAPDKAWKAEFIDCHLYAEGADEQDDRASSTKLTKKIKPMDNYLGQIYQKVLLS THGQKIFRAIFEKLLALKENQALVFHCSAGKDRTGMTAALILMGLGVSDDDIARDYLITN QLYHFSYQKNQPSDDEMANLVAKMNLTKADSAGIEGITETIRMGWGSFDNFFIQVLGFSQ NDLLELRNKFLEEK >gi|260196034|gb|ACQN01000033.1| GENE 5 3961 - 4911 1006 316 aa, chain + ## HITS:1 COG:BS_yvdE KEGG:ns NR:ns ## COG: BS_yvdE COG1609 # Protein_GI_number: 16080516 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 315 1 315 316 305 48.0 1e-82 MVTLSDVAKEANVSKMTVSRAINHPEQVTPELLALVEKAMTKLDYHPNSIARALVNNRTN VIKFVTLEDIDTTEPYYMNLLFGVARGLKADSYAIQLVTDIDQIQKGNADGYIITGAREC NYPIFDELKKPFIFFGETSSSFDFVDTDNRYGTAVATKYALARGYKNAVFIGIDVKEGFE YAREYGYLASMQECNLEPQIFRTGNHSHLAEKLIDEQIERIKPNTCFICASDRLAIGVCR ALARLNKKMPEDYGVIGFDGVFLDQVANPQLTTVKQQIFKIGDMLAQLILEKIKQSGSAQ GQTYVKPELIVRGTTR >gi|260196034|gb|ACQN01000033.1| GENE 6 5055 - 6698 1518 547 aa, chain + ## HITS:1 COG:lin0223 KEGG:ns NR:ns ## COG: lin0223 COG0366 # Protein_GI_number: 16799300 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Listeria innocua # 2 509 4 511 553 359 38.0 7e-99 MKKWYDEAIIYQIYPKSFQDSNNDGIGDLQGIKQRIPYLKRLGINTIWLNPVFVSPQVDN GYDVANYFAIDEKMGTMADMEDLISTLHQNGIRIIMDFVLNHTSDQHPWFKDAIANPKSI YRDYYLFAGENGRRPNNWGSFFGGSVWEPDPKTGQFYFHLFDKHMPDLNWKNPGVRKAML DIAEFWLKKGIDGLRLDAFIHIAKADFRQNYPAPEGQTPVAEPFFANLPEVVHYLRPFCK QIKQDYPDCLLLGEAASANVNLAATYTDPENNLLDAAITFRCFTEDDSQLDSAIPANYQV KPFDFEAFKLTQMVWQQTLAGISKPVLYWSNHDMSRLRTRIAKNDLQAKSLAMLLYLERG LPIIYYGEELGLKNLAFQQLVDFKDQTVFDFAKKAEKQGYSEAEILTMVSRTHKMPARGV MPWKKTENYGFSKRKPWLTGKKQDEHFAEAEIADADSFFNFYRQLIALKKTPLFMEGSYY LHPTSNKSFIYQRDLGDESALVVVNLTNKPLKVMTKYQKVILSNGQYSLNDNELQLAPFA GLVLRRD >gi|260196034|gb|ACQN01000033.1| GENE 7 6700 - 8406 1602 568 aa, chain + ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 536 1 551 584 544 50.0 1e-154 MQEASLRHRPESEDCFVIDKTHLRLRFHTAKDDVKKVIVHYLDSYYDLKTAQTKEMEKIG SGQVAEYYMTTLELPLHRCQYTFEVVGEDGSHLIYGDRGIREFNDSNLYDYGQFFKVPYF HEIDMAKTPAWVKETVWYQIFPERFNNGDKSNDPVGTKPWNPSDHPGREDYYGGDLQGVL DKLDYLQSLGINGLYFCPIFKASSNHKYDTIDYLEIDPDFGDKTLFKKLVDEAHKRGMHV MLDAVFNHLGDQSRQWQDVVQNGRNSKYFNWFHINRLPVMPFTDPTKGEQLPPYDTFAFE KHMPKLNTANEDVQKYLLNIATYWVKEFHIDAWRLDVANEVDHHFWKKFHVELMNINPEF YIVGEVWHSSQPWLNGDEFTGVMNYPYTQQIEDHFLTKKISAKMLTEVLFDQLMLYRDCV NSGMLNMLDSHDTARLLTLAGDNKDRALCALAFELVQPGSPSIYYGTEMAMTGGNDPDCR KPMDWTKEGDSYWQKVHDLIKFRRKHSTVLSRSDIKFAIKDELIVIKHGEITAYFNTSNH EVEITKKCSVSNGYQNGVLSPNGYILCE >gi|260196034|gb|ACQN01000033.1| GENE 8 8524 - 10791 2304 755 aa, chain + ## HITS:1 COG:L128690 KEGG:ns NR:ns ## COG: L128690 COG1554 # Protein_GI_number: 15673659 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Lactococcus lactis # 1 747 4 744 751 869 58.0 0 MKRIFEINPWNITTHNFPKEDMRLAESITSIGNDYMGMRGNFEEGYSGDSLSGTYLAGVW FPDKTRVGWWKNGYPEYFGKSINAPSFIGIQILVDGEKVDLAKCDFSDYYQNLDMHQGLL TRSYIYHGKSDIKFTFERFLSNKIQEAALIKLKAQVLKGSAKLAFISTLDGNVVNEDSNY EEHFWKPILEDENEKCIQLITKENPFQVPQFTVLLKQNLQVNGERVHGEVQTEAGYLAEK VTTKLNSGEEYELEKDVIVITSRDVAPDEQLERADILMHELCEHSFAENLAEHEAIWKKR WNKSDVQIKGSDEAQQGIRFNIFQLFMTYYGQDARLNIGPKGFTGEKYGGATYWDTEAYI IPMYLAITPEAVTRALLEYRHRQLPGAYHNAKEQGLKGALFPMVTFNGIECHNEWEITFE EIHRNADIPFAIYQYTEYTGDESYVQDEGMDVLVGTARFWADRVHYSKRKHKYMIHGVTG PNEYENNVNNNWFTNKMASWLLAYTLERLPKAKPEALKRLAVSEEEKAHWQDIVDNMYFP EDKKLGIFVQHDTFLDKDIRPVSTIPTGERPINQHWSWDKILRSPFIKQADVLQGIYFLN NHFTKEQKEKNFDFYEPLTVHESSLSACIHAILAAELGKQEKAVELYQRTARLDLDNYNN DTSDGLHITSMSGSWLAIVQGFAGMRYYNDELSFKPFVPRQWQGYSFKMNYRGRLLEVAV NDEVKLRLLSGPSLKVKVYDQEVLLEEGQEKCLKA >gi|260196034|gb|ACQN01000033.1| GENE 9 10776 - 11447 848 223 aa, chain + ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 2 210 1 209 226 188 46.0 9e-48 MLKGLIFDLDGVITDSARYHLAAWRALAEELGINLPDKASDELRGLARMDSLELILRYGH QENKYSLTQKEALAAKKNAAYQQAIKQMTQADILPGISKLLEQAHTQGLKMAIASASMNA PTILKQLGLLEQFDAIVDPKTLTHGKPNPEIYQKAQALLGLKADEVISFEDAASGIAAIK AANQFAVGIGNHQVLKQADLVVIDTSELDLAKIIAIFNSKKVG >gi|260196034|gb|ACQN01000033.1| GENE 10 11453 - 12562 1275 369 aa, chain + ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 366 1 376 377 530 68.0 1e-150 MVEINLNHIYKKYPDAENYSVTDFDLHIKNQEFIVFVGPSGCGKSTTLRMIAGLEDISKG TLEIGGKVMNDVAPKDRNIAMVFQNYALYPHMSVYDNMAFGLKLRHYSKEEIDKKVKSAA EVLGLAHLLDRKPAALSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAKLRVSMRAEIAK LHQNLKTTTIYVTHDQTEAMTLADRIVIMCDGKIQQIGTPQEVYNHPINQFVAGFIGSPQ MNFFDVIYKDGKFSDGKGLVLEVPEGRAKQLEQAGYNGKKVIFGIRPEDIHSEGAFLETW PKSAVKAKVVVSELLGATSQLYLNVDGTEFVGIVNARDFHSPGQEVTVGFDVNKGHFFDS DTKKAIFTK >gi|260196034|gb|ACQN01000033.1| GENE 11 12592 - 14181 1348 529 aa, chain + ## HITS:1 COG:L128693 KEGG:ns NR:ns ## COG: L128693 COG0366 # Protein_GI_number: 15673663 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 4 527 15 540 541 656 60.0 0 MTPWWKNAVVYQIYPKSFQDSNGDGIGDLRGIINRLDYLEELGIDAIWLCPIYKSPGADN GYDIADYEAIDGQFGTMVDLDELIQKARHHHIRIVMDLVVNHTSDEHQWFVESRKSRENP YRDFYVWRDKPNNLTSAFSGSAWQYDEKTKQYYLHLFAKKQPDLNWKNPKLRQKVYDMMN FWIDKGIAGFRMDVIECIGKEPDQEITANGPHLHEYLQEMNRETFGKKDFLTVGETWSAS LADAKKYIDPKRHELSMVFQFEANSLDQVGASKWNLKKPDLAELKAVLIKWQKNLAWNSL FWENHDIPRVISRFGDDGKYRVESAKMFAIMLHLLKGTPYIFNGEEIGMTNCPVESIDDV NDIESRNMYFAGLKAGKSKAELLRAINAKGRDNARTPMQWDDTANAGFTAGKPWLHVNSN YRKINVKKCLADKNSIFYTYQKLIQLRHQDRIVVDGDFKVVETSDKIFAYERVLGDEKWL VVCNLTEEKAVFSSEQKIQKNLISNYPARNSLQEITLKPFEAFACKVTC >gi|260196034|gb|ACQN01000033.1| GENE 12 14203 - 15414 1752 403 aa, chain + ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 1 402 1 407 410 330 48.0 4e-90 MKIWKKLALATAALAMVGTLSACSSNKSTSSTSNKNQLTLWVDTEQVPYYKTIAKDFEKS HKGIKVRVTQSPNGSANAKTDVGKDPSKAADVFEVPNDQLGQMAEAGYINPLSPSDTKNI KNNYIETAYKGVEWKNKVYAYPYAQQAQTIYYNKSKLSENDVKDWDTLTSKGVVATDFTN AYVMWPVFFSAGTKLFGDNGETLKGSTFNSQEGVNALTWFAEQKKNKNVMQTSNALNQLK KGKAAAILDGPWNAANIKKILGKNFAVAKYPTITVGGKKVQMEAFLGIEGFAINSHTANA KASAQLAAYITNKKAQLIAHDKAGQIPVLKAAINSSDVKSDSVAEAVIEMAKPGNSVLMP KMAQMATFWDGAAPLISGAYDGKIKPAQYKAQLDKLAKKIEKK >gi|260196034|gb|ACQN01000033.1| GENE 13 15474 - 16832 1404 452 aa, chain + ## HITS:1 COG:L128696 KEGG:ns NR:ns ## COG: L128696 COG1175 # Protein_GI_number: 15673666 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Lactococcus lactis # 1 452 1 452 452 514 60.0 1e-145 MFKRKNHLPPTATFKEVWSKGDAITKCSFFIMGLNALKHGQWAKGLSLLLSEIVFFAWIG LTGFSSIKALSNLGLIKKKQVIYDASQGVYVTKQPDSSVLILLFGLLALMVVMGFIWLYI INLRSVRKNYVLKRDHQHILTNKEEIANLFDERLHATLMTIPVLGIFLFTILPTVFMISM AFTNYDRQHPIGFSWTGFKAFGNVLSGDLAGTFFPVLGWTLIWAVAATATTFFFGVLLAL LIESKGIKHKGFWRTIFVLVWAVPQFVSLLMMAQFLDYQGAFNAILMNLHLISSPLHFID NQAAPWVARITVIFVNMWIGIPVSMLVSTAIIQNLPQDQVEAAKIDGANAIQIFKSITFP QILFVMAPSLIQQFIGNINNFNVIYLLTGGAPMNNNYNGAGSTDLLVTWLYNLTFGQEQR YNASAVLGILIFILSATVSLIAYRRTNAFKEG >gi|260196034|gb|ACQN01000033.1| GENE 14 16835 - 17692 888 285 aa, chain + ## HITS:1 COG:L128697 KEGG:ns NR:ns ## COG: L128697 COG3833 # Protein_GI_number: 15673667 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Lactococcus lactis # 1 285 1 285 285 340 66.0 2e-93 MKSYTAQRRLSLIFRYALLIILSILWILPIVWIVLASFSYNDTGFVSTFWPEKFTLQNYI GIFTNPQYPFGNWIINTLIISITSAIISTFITISVAYVLSRLRFKLRKPFLQIALVLGMF PGFMAMIALYYILKGLNMLNLGGLLLVYVGGAGLGFYVAKGFFDTIPRAIDEAAEIDGAT KWQVFWNIGLPLSRPMIVYTALTAFIGPWVDFIFSGIILSTSGNAKTYTIAYGLYNMVHN SKGASTTYFAQFIAGCVIIAIPITILFIFMQKFYVNGITAGADKG >gi|260196034|gb|ACQN01000033.1| GENE 15 17748 - 18578 551 276 aa, chain - ## HITS:1 COG:no KEGG:LBA1934 NR:ns ## KEGG: LBA1934 # Name: mutR # Def: transcriptional regulator # Organism: L.acidophilus # Pathway: not_defined # 5 276 7 279 282 120 27.0 5e-26 MNFTFKKLRKMQNITLSQVANGICSVSMLSRWENGQGKMDFEKVIELLERINLTPAEFLA LSGLNQPDDLSQDLERAWLTKDQAKLQQLTTTALAKFQTSQKLIDLNYAAICASLYYNLS RKNLLSISNQNLLNKELSHLSVWGQENLSLFRTIINVLSPRIIYQVSYQVIEHLDFIQTA GNDTFYFAITTLFEAVIALFKANNFKYAQKILDKLNTLTFKERDMQLIIGRHFLNQLAEY HNQTNEQKIIKTISFLKEIGANHLAHYFLTIFNQIK >gi|260196034|gb|ACQN01000033.1| GENE 16 18675 - 19854 949 393 aa, chain + ## HITS:1 COG:PAB0724 KEGG:ns NR:ns ## COG: PAB0724 COG0477 # Protein_GI_number: 14521293 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pyrococcus abyssi # 7 392 3 389 418 76 25.0 9e-14 MVRQSQKQLLLAVSSLGIGNLASSIFSFCLSLYTLQKTGSSLVFSTILLINPAIKLLFTP LVGYTVDKYHHKKIAIGAQLISIVLDVIFLSLIELLSLNGQILLIALTVIGLSLADCFQE TSYKASTKSFVAEKYRQKLIGYEQVVIAGTAILAPILGGVVFSWLELNWVTIIELIGEVV SLLLISMIDFYLVEQRQGSHLSSIKESFKAGINYIRQDKNLLGLLLFAVFANFSLGAIEV GLPVIMVKQLKLGSELYGMTTSCLAIGMLVASLFLGKLSLNGAYLGFTGRNGVVLAVIFA IFAFIGLVRNPYLVVFTFGLGMFLIGSILTMSNFPFAMYLRTQIAEEYQGRVGSTMSSLV SLLSPISFATFGLLFNTLASLWIFSFCGVILLI Prediction of potential genes in microbial genomes Time: Wed May 25 14:10:55 2011 Seq name: gi|260196033|gb|ACQN01000034.1| Lactobacillus jensenii 115-3-CHN cont1.34, whole genome shotgun sequence Length of sequence - 2451 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 40 - 1281 1102 ## COG0477 Permeases of the major facilitator superfamily - Prom 1305 - 1364 6.8 + Prom 1116 - 1175 8.2 2 2 Tu 1 . + CDS 1411 - 2244 709 ## LCRIS_01884 D-ala, D-ala ligase + Term 2249 - 2297 3.4 Predicted protein(s) >gi|260196033|gb|ACQN01000034.1| GENE 1 40 - 1281 1102 413 aa, chain - ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 10 408 2 392 402 319 44.0 6e-87 MSKDISDLSKNWHRSFYTLWLGSFITGMGYSMTMPFISLFISDLGNYSKLEINLYSGLAF AMTFIAQAIVSPFWGSLADQKGRRLMCMRASGVMALTITLTGLAPNAIYIVIMRFIQGSF SGYINNATALMAGETPHEKSGWVMSQMMTAGTAGNLVGPLLGGALSSFFGNLLGGAWGYR IPFFITGFLMFMVFLSTTFFVKEHFTPVSREKMKPMQEIMASLPSIQLIVAMFITTMLVQ SATMSIDPIVSLYVKSMMPGSKSVALIAGIVAATPGLGTMVAASKIGHKMDEIGPLKVLR LGLIIGAILFAPMALTNSPWILAGLRFLLGIASAAMMPAAQTVLTLNTPSESFGRIFSYN QSFQAIGAVLGSLLGSGISGFANYEAVFWVTGFTLLLNFLIILIFANKKNTPR >gi|260196033|gb|ACQN01000034.1| GENE 2 1411 - 2244 709 277 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01884 NR:ns ## KEGG: LCRIS_01884 # Name: not_defined # Def: D-ala, D-ala ligase # Organism: L.crispatus # Pathway: not_defined # 21 277 66 326 327 303 57.0 3e-81 MGEKITREEYQREKVYGQKYKLNFWNIWTDRPYISVAIVVSIIITLFTRWYLGTVLILLV TAIGIYIIGRSHHPNRVLSIEFHLKASRQLSILKSLQMGASVLMFLATYMRKVVSVDFTS AGTQDGLQTIQGILSNTGKYGQQGSYILSLLNTVTGGSFWGTYRYASNTSQFMNDPAGLM IILWIFLLMVAPAICVLSNFFKEPYSRRASLIGGIVSLVSFAITPKVMDFLINKYAQDQN ISVRNALSVGEMAYVAIACALIVLVIAIYRNYKKDNF Prediction of potential genes in microbial genomes Time: Wed May 25 14:11:01 2011 Seq name: gi|260196032|gb|ACQN01000035.1| Lactobacillus jensenii 115-3-CHN cont1.35, whole genome shotgun sequence Length of sequence - 3249 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 29 - 88 9.6 1 1 Op 1 13/0.000 + CDS 122 - 1114 1252 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 2 1 Op 2 13/0.000 + CDS 1132 - 1929 975 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 3 1 Op 3 4/0.000 + CDS 1953 - 2870 1158 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 4 1 Op 4 . + CDS 2873 - 3229 252 ## COG4687 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|260196032|gb|ACQN01000035.1| GENE 1 122 - 1114 1252 330 aa, chain + ## HITS:1 COG:CAP0066_2 KEGG:ns NR:ns ## COG: CAP0066_2 COG3444 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 164 330 1 168 168 207 62.0 2e-53 MVGIVLASHGAFAEGISQSAEMIFGKQENFGSAILKPDEGPDDVRKKMENVINSFDNQDE VLFLIDLWGGTPFNQANKLLEEHGGNWAIVTGLNLPMVIEALSQRFSLDSAKEIATAIVE PAKDGIKTKPESLAPKESQKVEVKNQEPQGDIPEGTVLGDGHIKYVLARIDSRLLHGQVA TGWSKAMNPDRIIVVSDNVAKDDLRKNMIREAAPAGIKAHIVPIKKMVEVDKDPRFGATK ALLLFENPEDALEAIKDGVQIDTLNVGSMSYAVGKVNSNSVLSMDQKDVDTFEELKKMGI KFDVRKVPSDSPENMDSILKKAQSLLNEQK >gi|260196032|gb|ACQN01000035.1| GENE 2 1132 - 1929 975 265 aa, chain + ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 265 1 268 268 247 66.0 2e-65 MNAIQMVLVVFIAFLAGMEGILDQWQFHQPIISCTLIGLVTGNLTTGVMLGGALQFIAMG WANIGAAVAPDAALAGVASAIIMVQGHLSTDKIGTAIGIAVPLAVAGLGLTMIVRTLAVA ISHIMDKEAEKANYQGIEFWQLVATGLQGLRIAIPAALLLAIPSELVKSWLSAMPVWLSA GMTIGGGMVVAVGYAMVINMMASKEVGPFFAIGFALAAIQDLTLIALGAIGAALALMYLA LEGKGSNNSGSKGTGDPLGDILDNY >gi|260196032|gb|ACQN01000035.1| GENE 3 1953 - 2870 1158 305 aa, chain + ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 1 305 1 303 303 430 71.0 1e-120 MAENQIHLTKRDRLKVMWRSMLLQGSWNYERMQNGGWAYSLIPALRKLYPEKKDLKDALE RHLVFFNTHPYLASPILGVTLALEEEKANGKEVEDQAIQGVKVGMMGPLAGVGDPVFWYT VRPIVGSLGASLAAQGNILGPILFFIVWNLIRIAFLWYSQEFGYRVGSEITKDLSGGLMS KVTRGASMMGMFVLGALIERWVSIKFLPVVSKSPLQKGAYIDWSSLPKGAKGIQQALIQW HDQGLSLTSTKVTTLQNNLDSLIPGLAALCLTFLCMWLLKKKVSPIIIIIGIFIVGIAGH VVGLL >gi|260196032|gb|ACQN01000035.1| GENE 4 2873 - 3229 252 118 aa, chain + ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 114 12 125 135 118 50.0 3e-27 MVQSLNTTSDYVTKATWQRGIPCYGQIMIGDKGFEFYNDKNVLDYIQIPWNEITYVVADV HFKGKYIPRFELRTRNNGNFIFSAKQPIFVLKAIRKYIPADHMRQALSLWQKIKLRFK Prediction of potential genes in microbial genomes Time: Wed May 25 14:11:10 2011 Seq name: gi|260196031|gb|ACQN01000036.1| Lactobacillus jensenii 115-3-CHN cont1.36, whole genome shotgun sequence Length of sequence - 29858 bp Number of predicted genes - 26, with homology - 26 Number of transcription units - 12, operones - 6 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 32 - 1411 1097 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 1455 - 1514 9.0 - TRNA 1537 - 1610 70.9 # Arg ACG 0 0 - TRNA 1666 - 1738 79.6 # Thr CGT 0 0 + Prom 1584 - 1643 7.3 2 2 Tu 1 . + CDS 1827 - 2153 200 ## COG2076 Membrane transporters of cations and cationic drugs + Prom 2178 - 2237 7.7 3 3 Tu 1 . + CDS 2443 - 3168 967 ## LGAS_1547 aggregation promoting factor-like surface protein + Term 3205 - 3234 2.1 + Prom 3191 - 3250 11.3 4 4 Tu 1 . + CDS 3390 - 3857 403 ## COG0406 Fructose-2,6-bisphosphatase + Term 4035 - 4070 6.0 + TRNA 3955 - 4026 62.9 # Gln TTG 0 0 + Prom 3953 - 4012 77.7 5 5 Tu 1 . + CDS 4122 - 4994 1001 ## COG0039 Malate/lactate dehydrogenases + Term 5102 - 5168 30.0 + TRNA 5076 - 5157 65.6 # Tyr GTA 0 0 + TRNA 5164 - 5235 55.8 # Gln TTG 0 0 + Prom 5078 - 5137 80.3 6 6 Op 1 . + CDS 5359 - 6471 1011 ## LBA0515 hypothetical protein 7 6 Op 2 . + CDS 6563 - 7264 812 ## COG2188 Transcriptional regulators + Term 7267 - 7299 3.2 - Term 7255 - 7287 4.0 8 7 Tu 1 . - CDS 7290 - 7676 381 ## COG0615 Cytidylyltransferase - Prom 7702 - 7761 2.7 + Prom 7722 - 7781 5.8 9 8 Op 1 . + CDS 7802 - 8944 635 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 10 8 Op 2 . + CDS 8946 - 10379 1006 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 11 8 Op 3 3/0.000 + CDS 10381 - 11115 776 ## COG1922 Teichoic acid biosynthesis proteins 12 8 Op 4 . + CDS 11115 - 12215 1003 ## COG0438 Glycosyltransferase 13 8 Op 5 . + CDS 12217 - 12912 799 ## COG3774 Mannosyltransferase OCH1 and related enzymes + Term 12938 - 12969 0.0 + Prom 12919 - 12978 10.2 14 9 Op 1 5/0.000 + CDS 13010 - 14485 1448 ## COG1488 Nicotinic acid phosphoribosyltransferase 15 9 Op 2 . + CDS 14485 - 15315 1082 ## COG0171 NAD synthase + Term 15437 - 15478 7.2 + Prom 15332 - 15391 4.9 16 10 Op 1 . + CDS 15488 - 18127 3355 ## COG0474 Cation transport ATPase + Term 18144 - 18182 1.1 17 10 Op 2 . + CDS 18197 - 18613 260 ## COG3091 Uncharacterized protein conserved in bacteria + Term 18784 - 18817 2.2 + TRNA 18690 - 18775 54.5 # Leu AAG 0 0 + Prom 18700 - 18759 80.4 18 11 Op 1 . + CDS 19003 - 19476 510 ## LBA1940 hypothetical protein 19 11 Op 2 . + CDS 19491 - 20135 726 ## COG1705 Muramidase (flagellum-specific) + Term 20152 - 20187 6.0 + Prom 20138 - 20197 8.7 20 12 Op 1 5/0.000 + CDS 20226 - 22490 2314 ## COG0210 Superfamily I DNA and RNA helicases 21 12 Op 2 4/0.000 + CDS 22528 - 24537 2006 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 22 12 Op 3 1/0.000 + CDS 24546 - 25694 1104 ## COG4851 Protein involved in sex pheromone biosynthesis 23 12 Op 4 31/0.000 + CDS 25707 - 26009 432 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 24 12 Op 5 21/0.000 + CDS 26009 - 27448 398 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 25 12 Op 6 2/0.000 + CDS 27452 - 28882 1992 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 26 12 Op 7 . + CDS 28911 - 29828 992 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Predicted protein(s) >gi|260196031|gb|ACQN01000036.1| GENE 1 32 - 1411 1097 459 aa, chain - ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 8 456 9 456 458 374 44.0 1e-103 MKKEKETNASQTGYRRTLSNSHIQLIALGGTIGTGLFLGVGDSIHRAGPSVILIFIIVGF FLFLLMRALGELILSDLKKHTYIEFIEKYLGKNIGFISGYLYWISWLTLAMAELTALGIY FEYWFPHLPTWLPGLITMVVLLIINLISAKVFGNLEFSFAIIKILTILAFVVMIGYFLII GESTKYGDISLANLNAGGGFFAKGSHGFLLGFQMVIFSFIGVELIGLTAAEAQDPENTIS RAIDQLPIRIILFYVMAIIAILVAIPWPKISTTSSPFVQALSATGIKDAGSIINFVVISA AISSTNSFLYSAGRLLFSVNFDGKSKWSKTFGKLSKTQVPRNALIFSSLIIACAPLITLI IGDSAFTFISATSTSMFLIIWAIMILTHIRYRKETPRKDLKSFQMPLFPYLDYLVLAFFI AMIGLLLYLEKFRIPMIAALIAFVVLYSITKFFREKESN >gi|260196031|gb|ACQN01000036.1| GENE 2 1827 - 2153 200 108 aa, chain + ## HITS:1 COG:YPO2333 KEGG:ns NR:ns ## COG: YPO2333 COG2076 # Protein_GI_number: 16122557 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Yersinia pestis # 1 105 3 107 112 73 39.0 1e-13 MKEYVYLLIAIIGELIGTTLLKASDGFSKLFLGLLALFSYASCYFFFSKCLRTISLGVAY AIWSGVGIVITTVIGIILWKEKTNLITVLAIIMIIIGIILLNLTTTNK >gi|260196031|gb|ACQN01000036.1| GENE 3 2443 - 3168 967 241 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1547 NR:ns ## KEGG: LGAS_1547 # Name: not_defined # Def: aggregation promoting factor-like surface protein # Organism: L.gasseri # Pathway: not_defined # 12 241 28 261 261 157 50.0 3e-37 MAVAAVTLTGAMATNLKSNTAHAATIVNNDTDVVTINYVPGYGIAIWDNPDNPQLKNNNK LQHATSWKVFETAYDSQGNKWYDLGGGQWIEAKWTKAGLNSVNPYVAFNQVASQSSSYSS STQASNQVANTASYANAASSNNYSSASTTSSTSTTTSTTSSYTSTATGSEADAKAWIANK ESGGSYTAQNGQYYGKYQLSISYLNGDLSATNQEKVADNYVYSRYGSWTAAKAFWLANGW Y >gi|260196031|gb|ACQN01000036.1| GENE 4 3390 - 3857 403 155 aa, chain + ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 2 117 36 150 199 75 38.0 4e-14 MQAKVTGDFFRKNGIKFDKAFCSTQERASDTLEFITERKMSYERLKDMREKWYGIYEGQD EVTLPWNHGSVADPTMEADFLAVDRMKRAIEYIKKQLADGETAIAVGHGAILGMYVRNIF PETNFHFENCSVVKLIFDGDKVEFAGSYCPAKGMK >gi|260196031|gb|ACQN01000036.1| GENE 5 4122 - 4994 1001 290 aa, chain + ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 2 284 3 297 302 203 37.0 3e-52 MRRVGIIGLGNVGATAAFNLFTHGYCDEIVLLDVNEAKMQAEAIDLLDTLPVNDHEVKVY YGDWDKLRDADLIIAGFGVKVTSSSEELAINSRNAQSVGQKIKASGFNGIIINIANPCDV ITTVLQKTTDLPKQKVFGIGTMLDSVRLRRVISEKLELNSKQIGGFVLGEHGLCDFIAWS TVNHEFSDAEKAEIANEAKSNAEKLIAGKGFTNWAVTSAAMELVRAVLTDEYFYTVCSVY VEEYGIYLGYPAVIGKNGVEKIAQLSLPSDEEYHLQEAIALIKEHLAEID >gi|260196031|gb|ACQN01000036.1| GENE 6 5359 - 6471 1011 370 aa, chain + ## HITS:1 COG:no KEGG:LBA0515 NR:ns ## KEGG: LBA0515 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 369 1 369 371 406 55.0 1e-112 MPRIVKVGAGGDEIDWKEALKNLRADDMLLLKPGFYELEQGISACDVTIKGTGASPEDTV IDGYISVSPDSRYVTLENLTINTIGERNALFIPYNADTYLTLRNCVIKTEINENAAIALN GKCTVELYSCRVINGSVSFFSGSDFRLEMNDSQIDYPVTDYCGLALEGIGTAIINNSTVN SSINTFSDTNIELVINNSRLRDVHLAGQTWLNMLNCQIYSKEDNAFTSDDECWLNIANSV FSGGMYLDGSTTMLLQNSKCDRLMAIAGTKTTMTNSLCKSHADFQQNASCDATRSTFNGS EEFEFFLAVNGEAEFKGHDIILNPNGATLAVQDDAIFRTNVLSSDQKALSVEYTNLPNVN ILGLKWEKRK >gi|260196031|gb|ACQN01000036.1| GENE 7 6563 - 7264 812 233 aa, chain + ## HITS:1 COG:SP1446 KEGG:ns NR:ns ## COG: SP1446 COG2188 # Protein_GI_number: 15901296 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 229 6 230 235 230 52.0 1e-60 MQEPIYIKIHNQIKQDIENRVYKVGERIPAERQLAQEFGVSRMTLRQAIKTLEDEGILER RLGSGTYVSSQKVQEKMSGVMSFTQITRANGQVPSSKLLSYRITKPFLSEKERLKINEND NVLRMERIRYADDIPICFEVVTIPQKLIKNFSKHDISTSLYKTLEEKGGYKIGSVVENIG ASIANENDARYLKIHRGDALVTRRQVTTLTDGQPFEYTRAEYVAERFEFTFSR >gi|260196031|gb|ACQN01000036.1| GENE 8 7290 - 7676 381 128 aa, chain - ## HITS:1 COG:lin1076 KEGG:ns NR:ns ## COG: lin1076 COG0615 # Protein_GI_number: 16800145 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Listeria innocua # 1 128 1 127 127 189 74.0 1e-48 MKKVITYGTFDLLHYGHVRLLKRAKELGDYLIVGLSTDEFNEFKKHKEAYNSYAERKYIL EAIKYVDEVIPEEDWDQKIKDVQKYDINTFVMGDDWKGKFDFLKPYCDVVYLPRTPGIST TKIKEDLK >gi|260196031|gb|ACQN01000036.1| GENE 9 7802 - 8944 635 380 aa, chain + ## HITS:1 COG:MTH365 KEGG:ns NR:ns ## COG: MTH365 COG1887 # Protein_GI_number: 15678393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Methanothermobacter thermautotrophicus # 92 375 128 406 409 125 30.0 1e-28 MKSVLFGLYIRFLKLCAFFVPIRSNSFVILNGAGRSGSNGYLFYKYLRKEHPELNVTLVE PWPSSHLKWSVWKKIGGAQYIFTTHQPFKIKRKQISFSLWHGIPLKRMGFMAYNTKYHTN KHNMNIWQHQADYIASSSDIYETLMASCVGIDTNKFIRTGFPRLDFLNKPISKRIILKDL FDSDNEKAKIGIYMPTFRYELEDRTIMNQIESGNFFAFDDFNIVALNSTLVENNQYLIVK LHPYEMKLVSAEMKQASNIAFLNNNYLNENDIDLYELLGITDFLMTDFSSIFFDYLLLNR PIIFVSNFLKQYSKARGLLMSPYEKIVPGQQVLNQKELQIILKNIDKDPYKERRNKLCTI FFEKDKNCCQSIYELTKRVN >gi|260196031|gb|ACQN01000036.1| GENE 10 8946 - 10379 1006 477 aa, chain + ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 7 466 9 468 476 140 25.0 4e-33 MKKTLLNIFYNAIYQIFLVLVPLITVPYLSRVLGPNTYGIYSSVNNTFQFLMVFCTLSVS YIGMRTISRIRAENPKKDLTEAFWGLWYFQGIAGLVTIALTVLVSIVFKVKYWNYILLMV PFLISAQLDIAWFFQGLADFGRVVLRNTIVKLISVLLILVLVKEPSDLYKYMLIMSVSTM LGSFVFWFNIRSYVGKPTKYFYKLRITSKAIITLLIPQIATQIYTSLDKPILNFFQNTTQ VSYYDNSQRIANMILGVITSITLVMMPKMASEGKEAQKKILRKSLEATVMLGTLFSVIVM VNTKEFVPFFFGEKYIPMTPLMFFFTLTIIFIPMGGVFANQFALANKRDKDYAIPVCIGA VLEVLLSIILDRQFGATGALISILTTEVIVLILRIWIVRDGYEFKYVFKDIPKYFIIGIV SLSIGMLIPQILASAFFNMALKSIIVMLIYLGLMFMMKLDFNQDILNVTNKFLRRNR >gi|260196031|gb|ACQN01000036.1| GENE 11 10381 - 11115 776 244 aa, chain + ## HITS:1 COG:lin2665 KEGG:ns NR:ns ## COG: lin2665 COG1922 # Protein_GI_number: 16801726 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Listeria innocua # 3 243 4 239 244 176 41.0 3e-44 MPEKVDILGVKFNNYSLKGYQNEIIRRLDDKLSTFIVTANPEIVMAANENPVFMKLINQD ADFVTADGIGIIKAANILNKPISERVTGYDLFTWLLDIANQRKNKVYFIGAKEEVIDDLG KRIQKEYPNIEIVGLKNGYFKDKLDIIARDISKTKPDMVFAALGYPKQEQLLDILRKQEL PAIMMGVGGSFDVFSGHAKRAPKVWQDLHIEWVYRFLKEPSRFRRFLALPRFIEEVYRSK RGRR >gi|260196031|gb|ACQN01000036.1| GENE 12 11115 - 12215 1003 366 aa, chain + ## HITS:1 COG:MA1183 KEGG:ns NR:ns ## COG: MA1183 COG0438 # Protein_GI_number: 20090049 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Methanosarcina acetivorans str.C2A # 50 322 65 341 379 89 26.0 9e-18 MKVLHVNAGLEKGGGLFHIINLLTEAKKEGQDFELLTLAEGPVSQKAISKGIKTHVLKTK SRYDLTSLKRLSQFINENNFDYVHTHGARANLYLSLIKKRINAKWVITVHSNPLLDFEGR GFMGWIFTKLNIKALKKADGILAITQNFANLLTEKIGINKKKVHIIYNGIFFHESSDLPA KYDHPYFNLVNVARCEKVKGQELLLKALKDLHDPHIRLHIAGDGSELENLKNLAQELNIS NQVTFHGFMSHDDLSHLYERCDLAVLTSYSESFPLVLLEAADNMVPLLSTDVGDIKKMIP SADYGFVSPIGDLDMIKEQILKASLMPSIELREMAKREKEYLMNNFSLANQLEMILQAYT KIKNEA >gi|260196031|gb|ACQN01000036.1| GENE 13 12217 - 12912 799 231 aa, chain + ## HITS:1 COG:FN1241 KEGG:ns NR:ns ## COG: FN1241 COG3774 # Protein_GI_number: 19704576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannosyltransferase OCH1 and related enzymes # Organism: Fusobacterium nucleatum # 1 132 1 135 243 130 49.0 2e-30 MIPKIIHYVWVGGNPKPEKIQTCMKTWKKHLGDYKIIEWNESNFDIHENKYVEQAYKQKK WAFVSDYIRAKAVYEYGGIYLDTDVLVLDDLKDLLDNKCFVGFENKDNPFTAVFGAEKGH PLIKDMLDYYNDRDFEFDSSDQMAGVNTVSVSDILKDKYGAVPNNQEQVLKDDIHVYPDG ILCNPSKNSKTIHVFTGTWMEGSKPFKRKLVTFLKLRIKTKWQAGLYSKLF >gi|260196031|gb|ACQN01000036.1| GENE 14 13010 - 14485 1448 491 aa, chain + ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 8 485 11 487 495 676 68.0 0 MFYKQIDEDDSLILHTDLYEINMMYTYFKEGISEKKAVFEVFYRKEPFGNGFAVFAGLEH IVQYLNDLHFSESDLAFLKETQDYDDDFIEYLRNLELNLTVRSMEEGQLVFANEPIVQIE GPLSQCQLVETTILNIVNFQTLLATKAARIKLAVGSDALMEFGTRRAQETDAALWGTRAA YIGGFDATSNVRAAKLFGIPASGTHAHALVQAFGNEYAAFKAYAQTHKDCVFLVDTYDTV RSGVPTAIKVAKEMGDKINFLGVRIDSGDMAYISKQVRKQLDDAGFKNAKIFASNDLDEK TITNLKMQGAKIDVWGIGTKFITAFDQPALGAVYKLVAIEDENGNWKDSLKISSNAIKIS TPGKKQVWRICANSDRKNEGDWVARVGEDPRNFNALFMFHQQYTYINKVVTNFTAKPLLK DIFIEGKYVDHPRSLAEIKAFCQANLENLWDEYKRSLNPQEYPVDLSQNLYESKIDLISE IRTKIRNRGLH >gi|260196031|gb|ACQN01000036.1| GENE 15 14485 - 15315 1082 276 aa, chain + ## HITS:1 COG:ECs2446 KEGG:ns NR:ns ## COG: ECs2446 COG0171 # Protein_GI_number: 15831700 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Escherichia coli O157:H7 # 4 276 3 275 275 364 66.0 1e-101 MRDLQKEIIAYEHVLPEIDPEKEIRRSVDFLKDYLKAHPFLKSLVLGISGGQDSTLTGKL CQIAIDELRAETGNQEYKFIAIRLPYGVQNDASDAADAVAFQKPDVDLIVNIKDAVDKTV ESLEKAGVKVTDFNKGNIKARQRMIVQYGIAGAYSGAVVGTDHAAENITGFYTKYGDGAS DLVPLFRLDKRQGKALLKYLGCPEHLYLKAPTADLEEDAPDLPDEVALGVTYKDIDDYLE GKEVKLEAAEKIEAWWNKTKHKRELPITVFDDFYKK >gi|260196031|gb|ACQN01000036.1| GENE 16 15488 - 18127 3355 879 aa, chain + ## HITS:1 COG:SP1551 KEGG:ns NR:ns ## COG: SP1551 COG0474 # Protein_GI_number: 15901394 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 5 877 26 908 914 952 59.0 0 MPKNYYSQSPENIEQELDTNIQSGLSSAKAQERLERDGLNALATEKGKSMFARFIDQFKD FMIIVLLIAALVSGVVAGEWTDAGIILFVVLMNAILGVVQEARSEAAIEALKKMTTPVAH VRRNGQVVEVPSTELVKGDIVLLEAGDVVPADLRLTTTESLKIEEAALTGESVPVEKDKS LISKDDVALADRVNMAYSSTNVTYGRGEGVVVATAMETEVGKIATMINEADETDTPLKQS LNQLGKTLTWMILGICALVFVVGILRNPANESQASLMIDMFLIAVSLAVAAIPEGLPAIV TIILALGTQTMAKHKAIVRKLPAVETLGATDIICSDKTGTLTQNKMTVEKIYYDGQLHDA SEAVDANSDIMQTMLLANDTKLQADGLLGDPTETALTQFGLDKGINVADLLETKKRVQEV PFDSDRKLMSTVNKNGDKYYVAVKGAPDELLKRVSNLSDKEKEQVLLANKEMAQNALRVL GLAYKEVEKPFEAVNSQTVENKLIFAGLVGMIDPERPEAKAAVAEAKAAGIRTVMITGDH QVTAQAIAERLGIIEKGQSKRVLTGSELDKMDETYFKEHVSDYSVYARVSPEHKVKIVKA WQANEKIVAMTGDGVNDAPSLKQADIGIGMGITGTEVSKGASDMILADDNFATIVEAVKQ GRKVFSNIQKAILYLMSCNVGEVLTVFIMTIMGWDVLQPVQLLWINLVTDSLPAIALGVE PVEDGIMNRKPRGRKSNFFSGGVASSIVYQGILEGVLVLIVYTLGLHIGPHVADPKLQHG DALTMAFLTLGLIQLFHAFNSKYVHQSIFRKHTFQNKWFNWAIVISAIIMAAVELPFLTN VFKVTELDLDQWLAVLGTGCLMIIIVELVKLVQRRMGKE >gi|260196031|gb|ACQN01000036.1| GENE 17 18197 - 18613 260 138 aa, chain + ## HITS:1 COG:L86677 KEGG:ns NR:ns ## COG: L86677 COG3091 # Protein_GI_number: 15672268 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 5 138 6 135 147 115 51.0 2e-26 MNEVELLKLIRKISLESFSYPFNGKAKINYRFKTTGGRYHLKDRHIEINAHFLKKEYRKD LIGIIKHELCHYYLHTHQMGYKHQNRDFKILLKQVGGSRYAPDIGLAKKIKYTYQCTNCH KLYYRIRRIDLKKYVCGK >gi|260196031|gb|ACQN01000036.1| GENE 18 19003 - 19476 510 157 aa, chain + ## HITS:1 COG:no KEGG:LBA1940 NR:ns ## KEGG: LBA1940 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 157 37 201 201 121 46.0 7e-27 MPAVTTIPLTIAIYSVLLGARAGMGLGIVWGVISMFLAYTRPTSLVSIFLFQNPIIAIIP RALSGYLAGIVALKNNRLYYCLSGLISSLTNTVFVIILASVILTGNQELLAHLGHTNGNL LVLLTSALAFNGILEAIFSAILAPIILKPLIKIMQYK >gi|260196031|gb|ACQN01000036.1| GENE 19 19491 - 20135 726 214 aa, chain + ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 40 213 32 204 209 167 50.0 1e-41 MARSRSRVKKTTLTLVKVFGVLLILVVAFVCFRYYRRQAINNELIRQEQLAREQAAAKEL KIKTDFIKKIGPIAQKADQGFALLPSITIAQACLESNYGQSELSQKYNNLFGVKSSDPNT SKTLSTKEYVNGKWITVKASFQIYDSYESSIQAHARLFQNGTTWNKDQYQHVLAAKDYKS QAKALVTDGYATDPDYATKLINLIEQFNLNKYDN >gi|260196031|gb|ACQN01000036.1| GENE 20 20226 - 22490 2314 754 aa, chain + ## HITS:1 COG:SP1087 KEGG:ns NR:ns ## COG: SP1087 COG0210 # Protein_GI_number: 15900955 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pneumoniae TIGR4 # 6 753 4 761 763 750 53.0 0 MSRETILKGLNPQQQEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEEKGVAPWNILAI TFTNKAATEMKERVQKLLGPAGQDVWMSTFHALCVRILRRDADKIGYSRNFSIADSSEQV TLIKHIEKDLNINPKQYNPRAILSAISNAKNDLLNPKDFESASGNRPFDQVVSEIYKEYQ KRLVQDQIMDFDDLIMQTLVLFQKDKATLHYYQNKFRYLLVDEYQDTNEAQYQLCRLLAA QYSNVCVVGDGDQSIYGWRGANMENILNFEKDYKEKGVHTVKLEQNYRSTGHILSAANAV IKNNQNRKAKKLWTDQGAGEKITYYRAQSDVDEAIFVISKITEAVKAGKRDYKDFAILYR TNAQSRGFEESLVKSNIPYQIVGGHKFYDRKEIKDILAYLKLVANTSDSMSFNRIVNMPK RGIGAATVEKLLTFANERRIGVGDALSNLELVPVSAAASKKLADFNAKLVDCVSYAQDAS HTVTGLTEKILEDFGYTEALKKEKTLESASRLENLDEFLTVTKRFDDNFEAEDDESLPIN DFLSEVTLLSDQDDIEDDGNQVTLMTLHAAKGLEFPVVFLVGMEDGIFPLSRAMLEEDQL EEERRLAYVGITRAREKLYLTNAFSRTMYGKTTSNPASRFVQEIKPEDLETEYAGGFNKQ RANSVSSTSSIPFFNKDERARSQVYTSKTAAKASGAVGAEKEGWNVGDQVTHKAWGKGVV VKVNGTGEDMELDIAFESKGIKRLLAAFAPIKKV >gi|260196031|gb|ACQN01000036.1| GENE 21 22528 - 24537 2006 669 aa, chain + ## HITS:1 COG:lin1870 KEGG:ns NR:ns ## COG: lin1870 COG0272 # Protein_GI_number: 16800936 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Listeria innocua # 10 666 4 661 671 648 51.0 0 MAKLNKKNAQEEIETLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQKLVELEKQFPELVTP DSITQRVGGEIKSDLGKVEHQVPMLSMGDVFSKDELFEFDQRIQKLVGGPVAYNVELKID GLSLSLEYVDGKLIQASTRGNGRIGEDVTKNVQYIDDIPKILPEKLTTEVRGECYMGKAA FLKLNTERDENGEAIFANPRNAAAGSLRQLDPKVTKKRNLSTFIYTWVNPPKEITSQHQA IQQMSKLGFHTNETGRKLANLDEVFAYIDEYTSKRDSLSYGIDGIVLKVDDLTLQKQLGN TVKVPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTTVSRAVLHNPD LLKQKDVRIGDTVKLHKAGDIIPEISEVVLSKRPANSQVYEIPTECPSCGQSLVHLEGEV ALRCINPACPAQIEEGIIHFASRPAMDIMGLGPKIVRQLIQHDLVKDVADLYHLTADDLA ELDHFGDKSISNLLTAIDNSRQNSVELLLNGLGIDHVGAKAALLIVQRFKNLNKIMQASV SDLTAIDTIGETIAESITTYFAQASVQKLVQELIDSGVNIDYLGEDVSEEEIVDNFFKNK TVVLTGKLAHFTRSEFTKKLESLGAKVTSSVSKKTDYVIYGTDAGSKLTKAESLKIALLT EEEAIEKIQ >gi|260196031|gb|ACQN01000036.1| GENE 22 24546 - 25694 1104 382 aa, chain + ## HITS:1 COG:lin1869 KEGG:ns NR:ns ## COG: lin1869 COG4851 # Protein_GI_number: 16800935 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Listeria innocua # 17 379 13 370 371 213 35.0 5e-55 MIVKKFLQIALLASSMLVLAGCGRLGDSDLANNATTTNNKTKKYQTTSTNSGYTVLLKNG KYVTSSTSGLTSSDLDNTVDSEALERGLVNLDKNVFSTNKYVFQEGQKLSSSTISSWLMR ESKSYPDGLNPKNNGKTGETTRNPVILNQILEQDFLTGSGSNYKLSGISLGLALNSIDYY QKTTGGPQYSSNISRSKQEEYGKETADKIVARLRKKKEMKNIPIMISLFSKTSQDSLVGG TFFAYGVAEGNSSKITNWKSVSEKSQVLPTVNNESPVNSDDASAFNSFKSAIEDYFPNLS GVVATVRYQNDKLTQENIQITTQFYGYVQIQSFTRLVQSEAKKYLAKDVPIEIKISSVND VQAIVYKNSGDDSYSSHIYGGE >gi|260196031|gb|ACQN01000036.1| GENE 23 25707 - 26009 432 100 aa, chain + ## HITS:1 COG:SP0438 KEGG:ns NR:ns ## COG: SP0438 COG0721 # Protein_GI_number: 15900356 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 95 1 95 100 85 50.0 2e-17 MEITKEEIKHVAALSRLEFKDEELDQFTSQMGKIIEMAEQLGEVNTEGVPETTQVVDRDT VYREDKPEHWQDRKEMLKNVPETSDGFIKVPVIIDKDDND >gi|260196031|gb|ACQN01000036.1| GENE 24 26009 - 27448 398 479 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 20 464 21 452 468 157 30 6e-38 MNYLNETIDSLNQKLANGEVSAQELADKTIANIKETDKKINAFITVDEDAKASENLDFAN KLAGVPIAIKDNIVTNGLKTTAASHILDNFIPVYDATVVSKLKKAGATVVGKTNLDEFAM GSSNENSYFGAVHNPWNLDKVPGGSSGGSAAAVASGEIVAALGSDTGGSIRQPAAFNGIF GIKPTYGRVSRWGLIAFASSLDQIGVLTKRVQDAAEVLNVISGADEHDSTVSEKTVPDFT KALGQDVKGLRVAVPKEYMSDAVDEGVRKAIQEQIDFLKENGAIINEVSLPHTKYVVPTY YIIASSEASSNLQRYDGIRYGYRAKDTKNLLDVYVKSRSEGFGDEVKRRIMLGSFALSAG SYDKFFRQASKVRTLICRDFDKIFEDNDVIVGPTTTEPAFEIGSEVKDPIKMYNNDILTI SANMSGVPAASVPAGLVNGMPVGLQIMAKRFDEESVLRVADFIERNNKFYEKKPAGLED >gi|260196031|gb|ACQN01000036.1| GENE 25 27452 - 28882 1992 476 aa, chain + ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 1 476 1 476 476 565 58.0 1e-161 MNFKSTIGLEVHFELKTKSKIFSPSPVTYGAEPNSEANVIDWGYPGVLPKLNKEVYRLGL MVALATHSEITPVTHFDRKNYYYPDNPKAYQITQFFEPLARNGYVEIEVRGKKKRIGIHE MHIEEDAGKNTHGTNGFSYVDLNRQGVPLLEVVSEPDMEDPEEAYAYLEKLRKIVQFTGA SDVKMEEGSMRVDTNISIRPAGQKELGTKVEMKNLNSFEHVRLSLAYEEKRQQEVLLSGG KVQLSTRRFDENSGKTVLERVKEGNADYRYFPEPDIAPYHIKQDWIDEIKAVLPKSAEER RTDYINKLGLKPYDADVILQTKEASDFFDKAMEAGADPQMTANWMNTQVNGYLNEHHVEL KDIKLTPENLAKMVTLIKDGVISSKIAKKVFAETVANGTDPKKFVEENGMAQLSDLSVLE PMVKEIVDNNPQSVEDFKNGKDRAIGFLVGQIMKQTHGKANPKIINQLLNKELQSR >gi|260196031|gb|ACQN01000036.1| GENE 26 28911 - 29828 992 305 aa, chain + ## HITS:1 COG:L26628 KEGG:ns NR:ns ## COG: L26628 COG1597 # Protein_GI_number: 15672402 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 4 303 3 302 342 329 54.0 4e-90 MIKKARLIYNPVSGHEQMPKNVADILNIVEQAGYEASAFRTTPEAFSAQHEATRVAKAGF DLIIAAGGDGTINEVVNGVAGLSQRPKLAIIPAGTTNDFARALRIPRDNLVEAAKVILQG KTRKMDVGQAICDDNEKYFVNIAGSGSLTELTYGVPSELKSAMGYGAYLIKGAEMLPSIS KSHMKLTYDDGVYDGDLSMFLLGMTNSIGGFEQIMPDAELSDGLFQLIVIKTADPLALLS LMVMALNGKHVNDPNIIYTKTRSLKVEMVDDDGNKVPFNLDGEIGGYLPVTFKNLQQHIE FYVGR Prediction of potential genes in microbial genomes Time: Wed May 25 14:11:27 2011 Seq name: gi|260196030|gb|ACQN01000037.1| Lactobacillus jensenii 115-3-CHN cont1.37, whole genome shotgun sequence Length of sequence - 14621 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 7, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 12 - 1277 1394 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance 2 1 Op 2 . - CDS 1293 - 3383 1820 ## COG1982 Arginine/lysine/ornithine decarboxylases - Prom 3563 - 3622 6.8 + Prom 3390 - 3449 6.6 3 2 Tu 1 . + CDS 3601 - 5064 1391 ## COG0531 Amino acid transporters + Term 5065 - 5132 16.0 + Prom 5103 - 5162 9.5 4 3 Op 1 . + CDS 5197 - 6168 1054 ## COG1073 Hydrolases of the alpha/beta superfamily 5 3 Op 2 . + CDS 6182 - 7054 383 ## LAR_1792 hypothetical protein 6 3 Op 3 . + CDS 7054 - 8217 1057 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 7 3 Op 4 . + CDS 8204 - 9061 859 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 9073 - 9123 4.6 - Term 9067 - 9105 6.2 8 4 Tu 1 . - CDS 9126 - 9833 761 ## COG0670 Integral membrane protein, interacts with FtsH - Prom 9898 - 9957 8.3 - Term 9937 - 9969 2.5 9 5 Tu 1 . - CDS 9980 - 11347 1321 ## COG1757 Na+/H+ antiporter - Prom 11573 - 11632 10.7 + Prom 11436 - 11495 2.3 10 6 Op 1 . + CDS 11605 - 13050 1290 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 11 6 Op 2 . + CDS 13051 - 13647 390 ## gi|256852246|ref|ZP_05557632.1| predicted protein + Term 13658 - 13709 8.2 - Term 13654 - 13686 2.5 12 7 Tu 1 . - CDS 13698 - 14621 713 ## COG4485 Predicted membrane protein Predicted protein(s) >gi|260196030|gb|ACQN01000037.1| GENE 1 12 - 1277 1394 421 aa, chain - ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 11 416 2 405 412 416 50.0 1e-116 MVLSWKANLPEDLQAKIDKVDKMIAPRLAEIDEQVLHNQQRVLELFRKHRVGEEDLVPST GYGYDDIGRDKLEAIYADYFKTDDALVRSQFSSATHAIAVGLFSMLRPGDTLYYLTGTPY DTIQEVIGLAGNKPGNMKEWGINFKATELLENGEVNFEQAKKDLQDPKIKVIAIQRSLGY AVRASFTMEKIKQMLKFIKEVRPDVNIFVDNCYGEFSECEEPTFYGADLIAGSLFKNAGA GIVKGGAFLVGRKDLIEGAGSRLNVPGAGKGEGATWGYLRDMYQGFFMAAHTTGQAIKGM IFTAALCEEMGMNVAPKWNDPRTDIVQTVTFGKPDPMVKFCGAIQHYSPLNSFVDPIPYH QDGYEDDVVMASGSFTEGSTIELSSDGPLRPPYRLYIQGGLSYEHVKIAISHAVEETFYK K >gi|260196030|gb|ACQN01000037.1| GENE 2 1293 - 3383 1820 696 aa, chain - ## HITS:1 COG:VCA1063 KEGG:ns NR:ns ## COG: VCA1063 COG1982 # Protein_GI_number: 15601814 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Vibrio cholerae # 80 696 98 719 720 582 44.0 1e-166 MTFLKIAVDSTIDLPQLSEWQQIPLTDIKNPAEIVAFIVNKNNPIKLATVQHLQKESGLP IPVIQVNSKVSSEDISTIISAITEYINKNIPGYLRDLVNFAQDQPISFTTPGHHNGLYYD KHPAGVIMNKFFGKNLMYADTSDTVPELGDMMTHSGTPLTAEQKAAQTYHADKVYFCTNG TTSANSICASAVLRKDDLVLFDRNNHKSLYNSALVMTGAKPVYIKTDRNPLGLIGEMDPE CLNEDYLRREATKIDPVKAKQKRPFRMAVVQAETYDGVFYDAKWIVDKIGKLCDYILFDC AWGGFEEFIPIMEHLSPLLLDLSPEDPGILVTQSLHKQQAGMAQTSQILKKDSHIKGQKR YVDHKHFNHAYLKFVTSSYSYPIYASLVANTYLVSGPGNQKWWDDTLRMGIEWRKKLLGK SKLFKPLVCDNFVQIPTEKLMTNSKYWNLSPTDTWHGFNRITSGEAMIDPMKITVVTPGI DITNNKYENDGIPGPIVAEFLMEKRIIRAKNDLNSLLFLLTPGDRQTDLDALLDAFLEFE KFYFEDAPLEKVVPKLAKEYTTRYRGYTLKQLCHEMHSYYATHQTFKLQKALFEKENMQN YSMIPSEADNLFMHNESKLISLKDVVGQIAAEGALPYPPGVFIVAPGEKWQEIDKEYFEV LVGAMENFPGFVPEIQGVYWTQGTNGKINVEVEVLK >gi|260196030|gb|ACQN01000037.1| GENE 3 3601 - 5064 1391 487 aa, chain + ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 16 478 9 471 473 337 39.0 2e-92 MKEDTFNLDLNKKHYLTWPVIALIDFVTIISFENIFYPFQNQGLSVVISWVFLLFSYVIP YALISSQMSLTFDNQEGGLASWVRRSSNDTLGYWTSWMYWVQSVPYIVDVSNSVIVSFSW IILGNNSLDKKMSTFWFGLLTFVIILAFILLENRLRNSLEILSLIGGGAMFIMSMLFVAL AAWAVMHGGHKIATQPFNWGAFKPSFSLNYFSTTGLLIFAMSGAELAAPYVSQMKNPKRD FPKAMWMLAIMTGFLTIFGTLALAMFFNAHHIPHDFKMNGPYYAFRLLGESLGMGKILMY LFAVVQAIFMMAQLAVLLDASSRVFAGDVADKFMPKWLTKKNKNGRPIHSYTFTVGLSLF LLLLTGTLPNINTIYNWLLNINGIISPYKTCWVFFAFVAMRMQQEKYKSDYVFIKNKTGA LAVGFWCLIFTFICATLGFVPQNVDFGTAEFNHQLVLNIITVIVLFGLGFILPWMRKREK KREENKY >gi|260196030|gb|ACQN01000037.1| GENE 4 5197 - 6168 1054 323 aa, chain + ## HITS:1 COG:PA2218 KEGG:ns NR:ns ## COG: PA2218 COG1073 # Protein_GI_number: 15597414 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Pseudomonas aeruginosa # 4 322 50 367 367 323 50.0 2e-88 MQVLNIETKWDKVFKKSNKVDHKKVTFPTRFGTILVADMYIPKNANEKLPALAVSGPFGA VKEQSSGLYAQKMAENGFLTIAFDPSFTGESTGTPRYMTSPDINTEDFQAAVDFLSNNDL VDPEKIGIIGICGWGGLALNAAAIDTRIKATVASTMYDMTRLIANGYFDKEDKESARNQA RKAINKQRTIDFREGQYKLAGGVVDPLPDDAPDFVKDYYAYYKTKRGYHKRSLNSNNGWA VTSALSFLNSKLLAYAGEIENAVMITHGTKAHSFYMGKDAFGKLKGDNKVFLPIEGATHT DLYDQIDKIPFKEMTDFFNKYLN >gi|260196030|gb|ACQN01000037.1| GENE 5 6182 - 7054 383 290 aa, chain + ## HITS:1 COG:no KEGG:LAR_1792 NR:ns ## KEGG: LAR_1792 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 279 1 279 280 381 63.0 1e-104 MKLIKEAYYEGERPLFKRKDTQIIDTTFGKGESPLKESRNISLNNSLFTWKYPLWYSKNI EVEDTTFESMARSGIWYTHNIKITNSSLQAPKLFRRSSEIVLDRVHFSDAQETLWSCKDI KITNTTINGDYFGKGSQNIYLDNVDLVGNYCFDGAKNVEVHNSRFISKDAFWNCENVTIY DSKISGEYLAWNSKHIKFINCTIESEQGLCYIDGLVLEHCKLLRTNLVFEYCKNINADII SDVISIKNPISGKIIANSIGEIIRDDSEIDSKQTFIKSRHCNLELLKEAK >gi|260196030|gb|ACQN01000037.1| GENE 6 7054 - 8217 1057 387 aa, chain + ## HITS:1 COG:CAC2970 KEGG:ns NR:ns ## COG: CAC2970 COG1168 # Protein_GI_number: 15896223 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Clostridium acetobutylicum # 1 382 1 381 384 298 37.0 8e-81 MYSFDQMPNRRGTNSIKWNVKDHELPMWIADMDFGVAPEIIQAMQDKIKLGAFGYESVPD SYYDAIVNWQEKQHNCQIKKDWILFVSGVIPALSSAVRRLTHPGEQIVTLTPVYNIFFHS IENNGRKSLEEELEYDANSHEYRINWSSLEQKLADPLTKMMILCNPHNPIGKSWTYEEIE KIAQLCNKYHVYLFSDEIHGDLVLNDSFSSSLKLPDNLKQNLIIAFSPSKTFNLAALHSA SVVVPNSELRFQIYRAINNDEIAEPNLLAIPATIAAYTQGSTWLHELKAYLLKNRQYIAN FLENELSQLNLASEFATYLAWIDISNLNINSQELADFLKENTGLIISSGQEYRGNGDNFI RLNFACPQSVLKEGLDRLKKGINSEKA >gi|260196030|gb|ACQN01000037.1| GENE 7 8204 - 9061 859 285 aa, chain + ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 5 284 2 286 289 144 32.0 1e-34 MKKHKKRFWILAGLILLIIICLGIFIGLRKNQPTKAALSKATATVFFHGWGSSRHAEEQM ANYLVSHKYASSIVVADVDYQGHVKYSGTLPAKTKHFIVEVNLQNNKSVSPNGGMTYSQS SNYVADVLASLKKKWQIKNVNLVAHSMGNLQVIYFIKNHAGSSKYPKINKLVDIAGHYNG IIGMDEPKDTSLEANGKPKMMNDTYRDLLSVRNTFPKNIQVMNIYGNYKNQGDGSVNNNS SKSLRYLVQKRAKSYEEREIKGYGAQHSRLHENKEVDQLLLKFLK >gi|260196030|gb|ACQN01000037.1| GENE 8 9126 - 9833 761 235 aa, chain - ## HITS:1 COG:YPO1163 KEGG:ns NR:ns ## COG: YPO1163 COG0670 # Protein_GI_number: 16121459 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Yersinia pestis # 1 230 1 233 236 113 36.0 4e-25 MDYFSQDSGRRKIQDVTAINSFLTKMYGFMLIAVLVSAASSYLTMTVFRSAIMNMPQAMF WVIIFLPFALCLGISFKAAKNPTLGFTLLMFLSVVYGVEFSIIASYYTGTTITSAFLSAA GVFAAMALFGTFTKRDLSNWGSYLRAAMIGFIVATLVNVFFVKSGAGAYIFSYIGVLIFT GWTAYDANSAKRIFIEYGDQVSDSGLAIMGALNMYLDFINLFMLLLEIFGVNDRR >gi|260196030|gb|ACQN01000037.1| GENE 9 9980 - 11347 1321 455 aa, chain - ## HITS:1 COG:BS_nhaC KEGG:ns NR:ns ## COG: BS_nhaC COG1757 # Protein_GI_number: 16078033 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Bacillus subtilis # 2 445 4 450 453 290 38.0 5e-78 MKKKIGFGESISILILLLAILGTSVIKFGINPEVPVLFVAALIIFWAKIRGFSWDEIQDG IKEGINIAIIPIFIFILIGALIAVWIKGGIIPSIMVLGFHLISGQFFVPSVFLVCSIVGL AIGSGFTTISTVGIAFLGIGASMNQNLALVAGAIISGAVFGDKMSPLSDSTNLSSAVAES ELFAHIKNMMWSTIPAFLGSLILFAFLGNGGHINLTKIDKTVSTLNSNFSVSWWALLPII LMFVCAWKKIPAIPTLFANIILTTIMIFIQDTKMTIPKLTDLLMNGFIAKTDNSQVNALL SRGGISSMMGTVALIVSTLSLGGLLMKFGIIQEAMEPLVEKLPKAGSLILVTILSGIGIN LFVGEQYLSVILPGRAFKGAFDKVGLHPLALSRVLEDGGSVINYLIPWGVAGSFAAATLG VPVLAFLPFTFFSLLSPIFSILSGFTGIGLKWNKK >gi|260196030|gb|ACQN01000037.1| GENE 10 11605 - 13050 1290 481 aa, chain + ## HITS:1 COG:SPy1346 KEGG:ns NR:ns ## COG: SPy1346 COG2265 # Protein_GI_number: 15675282 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 30 481 8 462 462 419 48.0 1e-117 MSNKKLKKDDILLASNATDFLVLYIIAILEKVDIMQKNQLVELEITDLSYEAMGVAHLDG MTIFVNNALPGEVVEAKILKVKKSFAFAKIENIIKQSPDRVTIKLNQWVQTGLASLAHIK YEKQLEFKRQQVINLLEKAHLNKKVNETVASPEEVGYRNKAQVPVRNVKGKLEIGFFRKH SHDLVPMENFFTTDPEIDRVLVATRDILRKNHVPAYDEVKNKGEVRYLEVRRSKANSDMM VILVCLHKDFPQLVKVADEISQISGVVSVILNHNPKKTNVILGKHDYLLAGNPQIEDKIG DIRFKISAQSFFQINSLQTPRLYNLAIEKAGLSKKDTVIDAYSGIGTIGLSVAKHVKQVY GVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPNWVNEGMKADVIFVDPPRKGLTPE FIEASVKTNPQKIVYISCNPATMVRDLTMYQELGYDFEEITPVDMFPQTPHVECVTVLEK K >gi|260196030|gb|ACQN01000037.1| GENE 11 13051 - 13647 390 198 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256852246|ref|ZP_05557632.1| ## NR: gi|256852246|ref|ZP_05557632.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 198 1 198 198 376 100.0 1e-103 MYTKKKQQQVEDVLLTQIVVTSEANNIFKYDGKIYSSQSYNSGLDPDMSDFAVTFYEIIY NKKIIRDGQIINTDFAGDTINTGIYKKGQRKKVKLKNRHCLANFWAIPYIHGRKREKPKR DYLDSYLTFVEEKILIQDDNFKEYHDFNEFKLAQFIPEGINSNTLVSQEISIKDRAQLLA KSEIGKTLWQYFNEHCLF >gi|260196030|gb|ACQN01000037.1| GENE 12 13698 - 14621 713 307 aa, chain - ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 5 292 548 836 850 68 23.0 1e-11 ATTRLTDSIVGFKNYGLRNDLKKNKVWYKDKYNTAYQCNTFPLAFAGYKANNLKLAIKQP LENQTKVLNALTGSKQVYFSKPISAQITSTNLVVKKDKNQLNYQSKKAILSTLTFTYKAK PNSVGYIVLDNNQLYTTQISKLTVNNQEICLMPITYQPIGVYVPKSGKVTLKIKLKKEIS KGSLLNPELYLLNKQALNKTISNAQNNRLKLSKWTNNQIEGTVNIKQGQSLITTIPYTSG WKAFSDGKPVKIVKTLNRFIALDLPKGKHKVTLKHTMPGLKLGIIISILGLISVVTEYWV LKKNREK Prediction of potential genes in microbial genomes Time: Wed May 25 14:11:54 2011 Seq name: gi|260196029|gb|ACQN01000038.1| Lactobacillus jensenii 115-3-CHN cont1.38, whole genome shotgun sequence Length of sequence - 48095 bp Number of predicted genes - 43, with homology - 43 Number of transcription units - 19, operones - 10 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 158 - 198 4.1 1 1 Tu 1 . - CDS 205 - 2115 2388 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 2345 - 2404 6.6 + Prom 2180 - 2239 6.0 2 2 Tu 1 . + CDS 2289 - 2930 780 ## COG2344 AT-rich DNA-binding protein + Term 2965 - 3018 11.5 + Prom 2988 - 3047 4.5 3 3 Op 1 41/0.000 + CDS 3115 - 3399 337 ## COG0234 Co-chaperonin GroES (HSP10) 4 3 Op 2 . + CDS 3427 - 5052 1599 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 5074 - 5111 6.4 + Prom 5095 - 5154 10.5 5 4 Tu 1 . + CDS 5175 - 6032 799 ## LCRIS_00802 hypothetical protein + Term 6106 - 6149 5.4 + Prom 6132 - 6191 5.5 6 5 Op 1 . + CDS 6211 - 7044 574 ## LJ1297 hypothetical protein + Prom 7047 - 7106 11.8 7 5 Op 2 . + CDS 7136 - 8701 1228 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 8734 - 8773 -0.8 + Prom 8728 - 8787 8.2 8 6 Op 1 . + CDS 8859 - 10940 1757 ## COG1479 Uncharacterized conserved protein 9 6 Op 2 27/0.000 + CDS 10995 - 12527 1721 ## COG0286 Type I restriction-modification system methyltransferase subunit 10 6 Op 3 . + CDS 12517 - 13056 528 ## COG0732 Restriction endonuclease S subunits - Term 12802 - 12848 1.1 11 7 Tu 1 . - CDS 13053 - 13658 455 ## Mmol_0228 restriction modification system DNA specificity domain protein - Prom 13742 - 13801 7.1 + Prom 13680 - 13739 7.6 12 8 Tu 1 . + CDS 13769 - 16879 2977 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases + Term 16969 - 17015 -0.6 + Prom 17047 - 17106 9.2 13 9 Op 1 6/0.000 + CDS 17137 - 19719 2865 ## COG0249 Mismatch repair ATPase (MutS family) 14 9 Op 2 1/0.400 + CDS 19719 - 21587 1997 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 15 9 Op 3 29/0.000 + CDS 21590 - 22171 634 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 16 9 Op 4 1/0.400 + CDS 22203 - 23213 1037 ## COG2255 Holliday junction resolvasome, helicase subunit 17 9 Op 5 . + CDS 23282 - 23656 565 ## COG1862 Preprotein translocase subunit YajC + Prom 23658 - 23717 5.6 18 10 Op 1 . + CDS 23744 - 25198 1855 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 19 10 Op 2 . + CDS 25198 - 26313 834 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 20 10 Op 3 . + CDS 26377 - 27336 709 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 21 10 Op 4 1/0.400 + CDS 27329 - 28687 1602 ## COG0513 Superfamily II DNA and RNA helicases + Prom 28834 - 28893 4.5 22 11 Op 1 4/0.200 + CDS 28914 - 31550 3404 ## COG0013 Alanyl-tRNA synthetase 23 11 Op 2 6/0.000 + CDS 31606 - 31863 407 ## COG4472 Uncharacterized protein conserved in bacteria 24 11 Op 3 7/0.000 + CDS 31863 - 32309 467 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 25 11 Op 4 . + CDS 32293 - 32607 468 ## COG3906 Uncharacterized protein conserved in bacteria + Term 32613 - 32646 2.0 26 11 Op 5 3/0.200 + CDS 32656 - 35016 2601 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 35029 - 35088 2.0 27 11 Op 6 . + CDS 35108 - 35419 529 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 35423 - 35478 13.1 - Term 35411 - 35466 15.5 28 12 Tu 1 . - CDS 35467 - 35862 451 ## lhv_0448 hypothetical protein + Prom 35734 - 35793 7.3 29 13 Op 1 3/0.200 + CDS 35951 - 36748 836 ## COG0796 Glutamate racemase 30 13 Op 2 . + CDS 36748 - 37365 424 ## PROTEIN SUPPORTED gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase 31 13 Op 3 . + CDS 37376 - 37555 286 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog + Term 37560 - 37593 5.4 - Term 37548 - 37581 5.4 32 14 Tu 1 . - CDS 37584 - 38405 894 ## COG0668 Small-conductance mechanosensitive channel - Prom 38473 - 38532 3.3 + Prom 38437 - 38496 7.0 33 15 Op 1 . + CDS 38521 - 38946 576 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 34 15 Op 2 . + CDS 38968 - 39297 427 ## FI9785_505 hypothetical protein + Term 39298 - 39345 7.2 - Term 39127 - 39163 0.6 35 16 Tu 1 . - CDS 39337 - 40449 1390 ## COG0006 Xaa-Pro aminopeptidase - Prom 40481 - 40540 8.1 + Prom 40417 - 40476 10.8 36 17 Tu 1 . + CDS 40598 - 41593 1103 ## COG1609 Transcriptional regulators + Term 41600 - 41649 13.4 - Term 41586 - 41637 14.6 37 18 Op 1 . - CDS 41638 - 43044 2026 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 38 18 Op 2 . - CDS 43101 - 44480 1094 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 44535 - 44594 4.8 + Prom 44454 - 44513 5.7 39 19 Op 1 . + CDS 44560 - 44877 318 ## LGAS_0441 hypothetical protein 40 19 Op 2 2/0.400 + CDS 44887 - 46275 1381 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 41 19 Op 3 1/0.400 + CDS 46262 - 46819 326 ## COG4470 Uncharacterized protein conserved in bacteria 42 19 Op 4 3/0.200 + CDS 46826 - 47590 959 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 43 19 Op 5 . + CDS 47587 - 48094 363 ## COG4478 Predicted membrane protein Predicted protein(s) >gi|260196029|gb|ACQN01000038.1| GENE 1 205 - 2115 2388 636 aa, chain - ## HITS:1 COG:L73239 KEGG:ns NR:ns ## COG: L73239 COG0488 # Protein_GI_number: 15673044 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 635 1 635 635 524 43.0 1e-148 MIIAQGHALEKQFGATTLFKDINFSIENNARIGLVGPNGVGKTTLLKIMTGEEESTKGEF TVNKDIDVGYIAQENALDEDKSIWDEMITVFAPLIKQGETLTKMQEQIADNPEDSDLLKR YDQMQFDFEQNGGYTYQADIKSVLNGFNFKENTWTKKISSLSGGEKTRLSFVKLLLKKPD LLLLDEPTNYLDLDTLDWLEGFLKNYDGAILTVSHDQYFLDHLATQIFEMRYGKLTIFKG DYTHYLAERKLRDAQQEAAYEKQQEEIKKTEEFIQKNIVRATTTKRAQSRRKQLEKMDRI DPPKHSNKVRINFKADRPSGKEVLIAQDLTIGYPDKTMVSDISFQVNKGDRVAIIGPNGI GKSTLLKTIMKKLAVKSGSIKYGASLDIGYYDQELQGLDYKKTVIDTIWDRHKSMPEKDV RSILASFLFTAKDIDKVVGQLSGGQRARLTLTVLALEHDNFLIMDEPTNHLDIEAKEVLE QALSKFDGTLLFVSHDRYFINQLANKIISVRTGHAKLYEGNYEYYLGEKNKPVNQLPEQV TKTETKVSENKLSYQEQKKLDSQKRKLQRTVDDLEAKIDELEQKEADIQTEMANPEIASN FDKLGPLQEDLSKVQAELDQATNDWEQAVNDLDNFG >gi|260196029|gb|ACQN01000038.1| GENE 2 2289 - 2930 780 213 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 2 207 4 209 215 255 60.0 4e-68 MDKIKIPKATARRLPLYYRYLILLNEEGKEKVSSTELSEAVQVDSASIRRDFSYFGALGK RGYGYDVKSLLGFFKKILNQDTLTNVALIGVGNLGHALLNYNFKRSNNIRISCAFDINSD LTGKIVSGVPVYDMKDMIEQIREQQITIAILTVPQINAQKTANEIVEAGVRGIMNFTPVR LSAPAGVRIQNVDLATELQTLVYFLESDKKIED >gi|260196029|gb|ACQN01000038.1| GENE 3 3115 - 3399 337 94 aa, chain + ## HITS:1 COG:BH0561 KEGG:ns NR:ns ## COG: BH0561 COG0234 # Protein_GI_number: 15613124 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Bacillus halodurans # 1 93 1 93 94 96 59.0 9e-21 MLQPIGDRVIVKVKKEEEETVGGIVLASNAKEKPTEGEVVAVGSGLVTSEGKVLPMTVKE GDRVVYDKYSGTNVKYDGEEYLVLHEKDILAIVK >gi|260196029|gb|ACQN01000038.1| GENE 4 3427 - 5052 1599 541 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 540 3 543 547 620 58 1e-177 MAKDIKFDEKARRSLLKGVDKLADTVKTTLGPKGRNVVLEKSYGAPEITNDGVTIAKAIE LKDHFENMGAKLVSEVAQKTNDIAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIE KATKAAVDELHKISHKVSGRDEIAQVASVSSASEEVGNLIADAMEKVGHDGVISIEESKG VNTELSVVEGMQFDRGYLSQYMVTDNDKMEADLDNPYILITDKKISNIQDILPLLQEIVQ QGKSLLIIADDVEGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLQDIAALTGGTVIT EDLGLELKDTKIDQLGQAGKVTVTKDSTTIVEGGGTKEAIAERVDSIRKEIENSTSDFDK EKLQERLAKLAGGVAVIKVGAATETELKERKYRIEDALNSTRAAVEEGYVAGGGTALVDV KKAITKLTSDNEDEQTGINIVLRALSAPVRQIAENAGKDGSVILDHLMSADPEVGYNAAT DKWENMVKAGIIDPTKVTRSALQNAASIAALLLTTEAVVAEIPEEKPAAPANPAAGMGGM M >gi|260196029|gb|ACQN01000038.1| GENE 5 5175 - 6032 799 285 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 3 283 7 293 293 170 37.0 6e-41 MFEDQKFYGFTNDEIFGSIMQNKRFCKAIIQAALPDVNVVSVESIDAQKELGTKSDKISK SVRLDIAVKDKAGNLYDVEMQVNNNHDIGPRMRYYQSSMDRDTLDRGEPYTSLSRTYLIF LCAFDPFGKGKLRYSFHLYDDENKSIQLKNNAENIIINSKGSGSEDVDLLNLQKLMNDDK IESKGIFKEIQNKIQEYNDDPKRRNLMRTAELRMKEETAVAEKRGIERGREKGDKNTVKA LTLTIKEMRPETNETDVFKQIKKTVGPDFSLSDSDIQAIIHQNMK >gi|260196029|gb|ACQN01000038.1| GENE 6 6211 - 7044 574 277 aa, chain + ## HITS:1 COG:no KEGG:LJ1297 NR:ns ## KEGG: LJ1297 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 277 1 270 271 142 36.0 2e-32 MEIGAALKVTRKKLNLSQSEMAGNILTKSYYSKIERGIHEINAQDLIDILNLHGIRIQDF FEEFNFEKNTFGKSNFDHLHRLVGNAYYQKDTDGLLKVIDAIDKFPNSQNNRLARGLRVE AKLLYQGLKYGPEKIDEETIREVKQLMFNSDNWDELSLTLLSVSLSFFKNDELSAIIKAI VTRNKPDKLTSRNREIVSSILINYLAYSYNRKITKGAALSLTFSWLSELDSSPKNCLTKI YANYFQMLLSGNKEKANQIRQFLNDNGMEDLTRYLAR >gi|260196029|gb|ACQN01000038.1| GENE 7 7136 - 8701 1228 521 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 5 504 2 514 535 152 25.0 1e-36 MIYQNYSKFKFFWLNFFGLIYSTENIIMAYMVGSLTNMATKREFSSLPMLFIQMVVVFTI VLISNLIFNYLKAGAIKTTNVKLRTSVLKGMLTSKHEDSANLGFLTNDFKLLETNRYEAE IQILFYSYTVVLALGYSLYLNWMLTLIFLVGASLPAIVSNFFQKQIQTSSVAWTKANDKY VNQTKHLLAGTEVFNLFNKRNAAVAQNRVTVDNLEDKLAKMNLAKNNTNAFLNIIAMGGT FLVPFSIGVMLVIQGQTTLGALFAIIQLSNSFVNPILQILSERNNLTTTKDIVEKIKQLS AQGQKAEKAAISDFNSLEVKDVNLSRQGNKLANGISFTLKKGEKLAVIGPSGSGKSTLLQ FLLYGDFGKASELKLDDAFVKAGAFSNLFSYASQKAIIFPESLWFNLTLGAELAESEVRA VCEQLDLGDLVREKGFDYQLGDNADQLSGGQLSRIGLARAILAKRPVLLLDEINASLDKK TAADVENYLLNSDLTFIEVNHHYDSESLAKYDQVVDFSKYM >gi|260196029|gb|ACQN01000038.1| GENE 8 8859 - 10940 1757 693 aa, chain + ## HITS:1 COG:Cgl0713 KEGG:ns NR:ns ## COG: Cgl0713 COG1479 # Protein_GI_number: 19551963 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 1 692 1 693 811 476 38.0 1e-134 MKGSEKRLISLYDGSNVRMIIPVYQRNYDWTRDNCRQLFDDLVSLIKNNRQNHFFGSVVE MGTQEGIGEVSIIDGQQRITTVYLLMLALVKLLEEEKITSTDPQLARRIRASYLEDEFQP EDKKLRLKPVKNDEMALKRLFKDEKDYLLSSNLTNNFRYFYERILDQELTADELFKAIQK LMIIDISLKQGEDDAQLIFESLNSTGLDLTEADKVRNYVLMNQPVKVQESLYENYWNKIE VNTNYEVSDFLRNYLTFNLKRVPKIQKVYLEFKKYSEKNDSDIEELLSDLERYSEINRDI SNASTGEREVDEVLHRLNILDMRVIKPFLLPLINYWKLNKIDSKTLIGSLKVVETFIFRR TMCSFPTNALNKIFATLFSETIKLTNQGNTEFLPVLSYILINKADSSRYPKDSEFLKSFD DKDIYDMNKNARKYLFDRLENQDSREHVNVVDNMQDGNYTIEHIMPQTLSDSWKNALGSD YKRIYTQWINKLANLTLTAYNSKYSNRSFIEKKYIDNGFDQSGFRLNDFLKNCNQWTEKE LLARNDYLKELALKLWPYPESNFQPKQREKVSRTLDEDYDFAGTKIVSYTFKGTPYQVKS WIEMYVNVIEALYEIDPTPLYKIIAMHATKGWKFYLSGTEKNEFTKVADDLYVYGRTNTW NKLNVLNKLFQIYGIDPAELVFEINEKKIRNDN >gi|260196029|gb|ACQN01000038.1| GENE 9 10995 - 12527 1721 510 aa, chain + ## HITS:1 COG:XF2742 KEGG:ns NR:ns ## COG: XF2742 COG0286 # Protein_GI_number: 15839331 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Xylella fastidiosa 9a5c # 8 508 16 517 519 574 56.0 1e-163 MASKSNDLKFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLKSDYP EDAEDSDAYLADNIFWVSPEARWDNIQKAAKTPEIGEVIDHAMESIEKDNESLRGILSKN YESPDLDRSRLGGVVDLISDINVGGKEAKERDILGRVYEYFLQKFASNEKKNGGEFYTPR SVVKTLVEMVEPFKGTVYDPCCGSGGMFVQSEQFVQEHQGQIADLSVYGQESNPTTWKLA KLNLAIRGIDNNFGAHQADTFTNDLHKGTHFDYILANPPFNVKKWGGEKLKDDPRWKYGI PPEGNANYAWIEHIISKLNPDGKAGFVLANGALSTTLKEELAIRKNLLEADKIDAIVALP DKMFYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMVDRTHREFSDEDIKKIA DTYHAYRGTNEQKYEDMAGFCKIAKLDEIAKNDYVLTPGRYVGLVEQEDDGEPYEVKMAR LTAELKKQFEESDRLQDEIKDVLKELGYEI >gi|260196029|gb|ACQN01000038.1| GENE 10 12517 - 13056 528 179 aa, chain + ## HITS:1 COG:jhp0414 KEGG:ns NR:ns ## COG: jhp0414 COG0732 # Protein_GI_number: 15611482 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Helicobacter pylori J99 # 7 177 11 178 409 152 49.0 3e-37 MKYKVGEIGKVIGGGTPSTKHEEYYTSSGKGIAWLTPKDLSSYSKMYIDHGSRDLTSEGY NNSSAKLLPKDSVLISSRAPIGYVAIAKNEIATNQGFKSIIPDKSKVYPEYLYYLMLENK LNLEKVASGSTFKEVSGKVMKEFEVEIPSLSKQEKILNQLIPIQRKIELNNQINDNLAA >gi|260196029|gb|ACQN01000038.1| GENE 11 13053 - 13658 455 201 aa, chain - ## HITS:1 COG:no KEGG:Mmol_0228 NR:ns ## KEGG: Mmol_0228 # Name: not_defined # Def: restriction modification system DNA specificity domain protein # Organism: M.mobilis # Pathway: not_defined # 4 199 194 386 397 146 42.0 4e-34 MPSDWNYVSLKDYAEVTPGYSYKGKELSPSHLAMATIKNFDRNGGFNARGFKEINPQKEI KVQKYANLYDVLVAHTDLTQNAEIIGNAEPILTCGNYDKIIFSMDLVKVTAKENKISKFL LALIMQGDIMKRHCLTYVNGTTVLHLNKKALKDFEFPFPENPQVISNIANFAEENYKKIN SNLRENDLLIKIKSELLNKYF >gi|260196029|gb|ACQN01000038.1| GENE 12 13769 - 16879 2977 1036 aa, chain + ## HITS:1 COG:XF2739 KEGG:ns NR:ns ## COG: XF2739 COG0610 # Protein_GI_number: 15839328 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 1 1032 15 1050 1058 774 39.0 0 MNSIKEESIEKDALETLAKQGYQVIKSEVYNHTSKIIDAERNNDHTKFILEPRLAKVLKE LNPGYSDDIYRRALHEFSKLADNPDMMINNHYMHKLLIEGVKIKTSENGENKTVTLHAID FDNWENNDFLATNQFEIVQGEKSRRTDITVFVNGLPLITFELKKPDNENITVKEAYEQLQ TYKAEIPDYMKYNEILIASDGVNARVGSLTAGFDRFMRWRQPKKELVPEGSLELDILIEY MLKPKTLLNIIQNFIIFETNGDSTVKILTAYHQYYMVNKAVVAAERALKSNSDKRIGVVW HTTGSGKSLSMVFFSGIVARKLGNPTILVINDRNDLDDQLFGTFAQAHEYLQQTPDHAEN RDEVRDYMSRNSGGIVFSTIQKFSPDFERGENEMPVLTNRSDVIVMADEAHRTQYGLQAE LTKNGVRYGYAKYLRDALPNASFIGFTGTPIDTADKSTVAVFGNYIDVYDITQSVADHAT VRIFYESHIIPLKLKSGSEEKFNELMNEYDLNTEASDSEKEARNKELTKLEAIAGAKQRL EAIAKHFISHFEARQKEEFGKSMIVEISRINAVKLYNEIIKLRPNWESSDIHKGKIKIVM TSSPSDGPELSKHNTSKQDRRILQQRMKDNSDELQIVIVVDMWLTGFDVPSLNTLYVDKP MKGHNLIQAIARVNRVFKNKESGLIVDYIGIADSLKLALSIYSKDDKDQVGINVEKVLAL LKDKYNIIKNDFLYGIDYSGFDSKDDIVRTRTVNKVANELIAEDKETIQKFGDVVTEAQK LYALVAIQPAAQEIGPEIAFFRLVKVFIMKLLSNNDDHERKNIDYRLRQMIDQSIIAEPE VDVYKSLGLEKPRLDTISPEFLKKVQNLNEKSLAVRILEKILRGQIKICLQMNIVQGKKF QEMLEASIAEYNKRGINTEIVIRELIEMAQKINAEQEKGKDLGLTPEEIAFYDALANHEK AVQVLGEEKLHLIAKELVKTVKANAGVDWERRAAVQAKMIMAVRHLLRKYGYPPDISADA TKLVVSQAKQMAIGPI >gi|260196029|gb|ACQN01000038.1| GENE 13 17137 - 19719 2865 860 aa, chain + ## HITS:1 COG:BS_mutS KEGG:ns NR:ns ## COG: BS_mutS COG0249 # Protein_GI_number: 16078767 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus subtilis # 1 856 1 857 858 839 50.0 0 MAETTPMMKQYYDIKSQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKSENPI PMAGVPHQAVDSYVNTLVEKGYKVALCEQLEDPKQAKGMVKRGIIQLVTPGTMMNEGPNG AKESNYLTSVFSTKSGFGLAYSDLSTGEIFTTHLKSFADVLNELLSLRTKEVVFEGSLSD SQKDVLKKSNITVSTPIQDQEKHAEVSYAIQKLSNQAEKDATKQLVIYLLVTQKRSLAHL QIAKSYEVSQYLQMSHVVQNNLELVASAKTGKKMGSLFWLLDKTNTAMGGRLLKQWLARP LLSISEIEKRQKIVQAMLDNYFTREGVKDALKGVYDLERLTGRIAFGSANARELLQLSRS LDAIPQIQSALFESGDEDLANFAEQIIDLSELAKKIKDTIVENPPILTTDGGLIREGINE QLDRYRDAMNNGKTWLAQLQAQERKATGIENLKIGYNKVFGYFIQVSKGNVAKVPEGRYI RKQTLTGSERYITPELKEHENLILEAENKSTDLEYQIFSDLREYIKTFIPKLQELGNAIA SLDALTSFATVAEENNYCRPSFHQDSQEIKVVAGRHPVVEKVLADGSYIPNDIQMADDTS VFLITGPNMSGKSTYMRQMALIAVMAQVGSFVPATEAALPIFDQIFTRIGAADDLISGQS TFMVEMSEANEALQNATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKTLFATH YHELTDMEKTLDHLKNIHVGATQENGNLIFLHKILPGPADQSYGIHVAQLAGLPNKVLRE ASKMLKRLEAQGANGLEPASLQLDLFNEKNDSEETTSDEAISDTEKQVIEDINNLYLADK TPLEVMQLVASWQQDLKDED >gi|260196029|gb|ACQN01000038.1| GENE 14 19719 - 21587 1997 622 aa, chain + ## HITS:1 COG:SP0173 KEGG:ns NR:ns ## COG: SP0173 COG0323 # Protein_GI_number: 15900110 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pneumoniae TIGR4 # 1 620 1 635 649 460 43.0 1e-129 MAKIHELSETLTNQIAAGEVIERPASVVKELVENAIDAKASQIEIEFIDAGLKEVIVRDN GSGIASEDLDLAFRRHATSKISKERDLFKIATLGFRGEALASIVAVSHTEVITSTDGIKG VKAEFAGGEKLSEETHASTKGTEIKVSDLFYNTPARLKYLKSPRTETMKIVDIVNRLALG HSEVAFTLKNEGKLLLKTPGNNNLRQDLANIYGRFIAKDMIEFSKEDPDFKVSGLLSTPE TTRSNRNFVSILLNGRYIKNYQLTKAILAGYGSKIAQGRYPIAVILIELDPFLVDVNVHP TKEQVRLSKEKELSRLITEGISTALLENTSQVSALANLNKEVDRQDQLAFNLNKNVVDTT RTYEEKPAKEEKQIADQEANYVDLNQVREDDRYVLTASWDKNVAIQVSLTPFTSKDTDSS EDSLLTKGDEKIAYSLPYLTYCGQVGAYILASNEDDLYLIDQVSAQRALKYRDTLKQMQE KDYQQTLLTPLVLDFGSEDYLEIKNHLSELKELGLILEDFGQNSLLLPSYPLWLKDESER NIRELLDLFLTSKKDNLTSIKSSLAKAEVRRQVRKEKLTKEGAQNLLEQLASLADPYHDP FGQLIIVKITDTELDHMFKKGE >gi|260196029|gb|ACQN01000038.1| GENE 15 21590 - 22171 634 193 aa, chain + ## HITS:1 COG:lin1568 KEGG:ns NR:ns ## COG: lin1568 COG0632 # Protein_GI_number: 16800636 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Listeria innocua # 1 191 1 201 201 164 48.0 9e-41 MYEYLEGTVTIITPSFIALDVGGQGFKIFSAKPYSYSEGQRIRVYVEQVVRDNDISLYGF ESSDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKTASQ IVLDLKGKLGSYVEQDLFTADTSQALSDALLALSALGYTKKEVEKVKPKLEKSSFDTADE YIKEGLKLLLKKK >gi|260196029|gb|ACQN01000038.1| GENE 16 22203 - 23213 1037 336 aa, chain + ## HITS:1 COG:SPy0038 KEGG:ns NR:ns ## COG: SPy0038 COG2255 # Protein_GI_number: 15674280 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pyogenes M1 GAS # 8 331 9 328 332 407 63.0 1e-113 MDEDSRVVAGEEEQGDLQDELSLRPQSFSQYIGQKRVKSEMEIYIQAAKKRDEALDHVLL YGPPGLGKTTMAFVIANELGVNLKNTSGPAIERAGDLVALLSDLDPGDVLFIDEIHRLAK PIEEILYSAMEDYYVDIVVGEGSTSHAVHVPLPPFTLIGATTRAGDLSAPLRDRFGIVEH MQYYTIGDLEKIIQRSSEVFATKIGKEAAHELARRSRGTPRVANRLLKRVRDYAQVKEEN KISLATTKYALDQLQVDNEGLDLTDRKILRTIIEAYHGGPVGIRTLAANIGEDTDTIEAV YEPYLLQHKFITMTPRGRVATQKAYLQLGIPLPEES >gi|260196029|gb|ACQN01000038.1| GENE 17 23282 - 23656 565 124 aa, chain + ## HITS:1 COG:BH1229 KEGG:ns NR:ns ## COG: BH1229 COG1862 # Protein_GI_number: 15613792 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Bacillus halodurans # 11 96 3 85 88 70 37.0 1e-12 MNISFMAAAAGFGSYSTILMMVVLVGFTYFFMIKPQKKRQQQAMDMLSKLKKGDKVILVS GLHAKIDSVNDKNKTVVVDADGIFLTFSKMAVRQVVEAAPEQEVKPAETEEKAASEEEKA NEDK >gi|260196029|gb|ACQN01000038.1| GENE 18 23744 - 25198 1855 484 aa, chain + ## HITS:1 COG:SP1243 KEGG:ns NR:ns ## COG: SP1243 COG0364 # Protein_GI_number: 15901104 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 8 484 5 483 495 432 43.0 1e-121 MTMKNIPVIMTILGGSGDLAHRKLYPALFNLFEQGLIKDNFAVIGTARRPWSHEYLREQV IDAVHENDKNVDENHLKQFASHFYYQSHDVTNTEHYQAIKDLANDLDSRYSAQGNRIFYM AMAPRFFGTIATHINDQKLMGSGFNRIVVEKPFGRDLASASELNEEIKASFSEDSVYRID HYLGKEMIQNILPMRLSNPLIKNIWSGEFIKNVQVTLAENLGVEARGGYYETSGALRDMV QNHIFQIITLLAMGEPTALSSEAIHAKKQELLDSMVIPSVDEVKKTFVRAQYAGTDDTFG YLQEPNVDPDSKTETFAAGKVKFTKGPLANVPIYFRTGKKMREKKNRIDIVLKHMNNLYG QAHSNNITIIIDPKSEIYFTINGKRISEPGIRRENLAYEFSDYENSLVPDGYERLLHDVF VGDQTNFTHWSELAKFWEFIDAVEAAWQSENESVEKLIQYPQGKLGPKQAGEIFESPTER WIYE >gi|260196029|gb|ACQN01000038.1| GENE 19 25198 - 26313 834 371 aa, chain + ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 7 366 8 364 364 315 46.0 1e-85 MDLLPKNDFHRKIIHLDMDAFYASVEMRDNPALKNKALVIAHDPREYNGHGVVATANYLA RQYGINSAMPAIEAVKRIPKDKLVFVTPNFDKYRQVSAQVHEIMHAVTDQVESVALDEAY MDVTSNKLGNYSAIELGSYMQERIYKELQLGASFGVSYNKFLAKMGSEYAKPFGRSVILP QEALTFLADQPIKKFPGVGKKTQGTFQALGLKTGKDLQKLTVKELTTLFGKFGYQLALHA HGIDFSPVKAQRKRKSIGKENTFLPVLFDQNEILRNLRNFAESISKQLKEKKLQGKVVTI KVRTPDFVTKTKRKTLSQFTNDEQIIYQASYELLNQIDYRTAGIRLLGISVSQLENNRYT EINLGLFSTDW >gi|260196029|gb|ACQN01000038.1| GENE 20 26377 - 27336 709 319 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 8 307 6 305 311 277 47 7e-74 MSNTTFDEIYAKIKEYDTIILHRHISPDPDAIGSQAGLGRSIKLAFPEKRVLYAGVDWGD LTWINKGDDIKDEDYKGALVITTDTADRPRVSDQRYDMGDFLIKMDHHPNVDPYGDLYYV NDQAPAASEIIADFLISQKMPITAEVALPIYAGIVGDTGRFMYPETTAHTFEIAAMLAKT GIDLTQIARNISDVTFKQAKLQSSVLDYMTVDKSGAAYAVLTQADLKKMGVTTEEASVTV STPGRIKDILTWSVIVELEDGTYRVHYRSKGPVINGLAAKHNGGGHALASGAKAKDEAEI KQIFAELIDVTNKYKEEHE >gi|260196029|gb|ACQN01000038.1| GENE 21 27329 - 28687 1602 452 aa, chain + ## HITS:1 COG:L0340 KEGG:ns NR:ns ## COG: L0340 COG0513 # Protein_GI_number: 15672392 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Lactococcus lactis # 5 447 3 444 446 370 43.0 1e-102 MNNIFLDSRINENLQAGLAKINFQKPTKVQSEVIPVFLTGKNMLVQAATGSGKTHAYLIP ALNEVITSSQTTQVVVTAPSRELAQQLYTVARQLRDASSLDISISLLAGGSDRDRQISKA ESKAPQVIVATPGRLLDFAKKRIINLENTKCFIIDEADMSLDLGFLGDIDQVAARMPKTV QIAAFSATIPVKLDNFLRKYMQKPERIIIENPAVIAPTIKNDLLDIGSKDRKNILFKLLT MGQPYLALVFANTKQKVDEVAKYLQDQGLRVAKIHGGITERERKRTLRLVRQGDFQYVVA TDLAARGIDIDGVSLVINYELPKDLEFVIHRIGRTGRNGLKGHAITLIREEEMNLVGQLE HVGVQFDFVELKNGELVERTHYHRRNQRSATNHKLDNRLIGYVKKAKVKKKPGYKKKIKK AIAEDAKQKRKLEKRHEARVQKRRRKRKRVDK >gi|260196029|gb|ACQN01000038.1| GENE 22 28914 - 31550 3404 878 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 872 1 870 879 941 55.0 0 MKKLTSSEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKN RRITSSQKSIRTNDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL DKDKLFCTVYPKDVDSQKVWEKAGMPKDHIIKLEDNFWDIGEGPCGPDTEIFYDRGQENN DVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLERVLSILQD APTNFETDLFLPMIHETEKMSAGKKYGANKEDDIAFKIIADHVRAVSFAIGDGALPSNSG RGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKIMESHYPEVLKQASFIQKVIKNEED RFGATLESGLSLLDDLIEKASASDDKTISGKDAFKLFDTYGFPYELTFEAAQDKGLKVDK AGFDKEMDAQKERARKARGDLQSMGRQDETLMNIKDKSEFEYGVYEEKHAKLIDIVVDDK LVDKADGETATLIFDKTPFYAERGGQVADHGDIYDQNGDLVAKVTDVQHAPNDQNLHFVD LVLPMEKGKEYVLKIDAHRREGLRHSHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFD FTAIDPMTPREIETVERLVNQKIWENIDVKTTITDPETGKKMGALALFNGKYGDKVRVVQ INDFSIEFCGGTHCSNTAQIGIFKIISEQAIGAGMRRIEAVTSEKAYEYLTNRDALLEEI KQEVKATKVEDIKTKITSLEEELHASQKKAAELESEINAAKASDIFENVQEVNGLKVIAA MADVNGMNDLRELADNWKASNKSDVLVLACANDGKANMVISLADAALDKGLKAGNLIKVA APVFGGGGGGRPNMAQAGGKNPAGLKEAITAVINEINK >gi|260196029|gb|ACQN01000038.1| GENE 23 31606 - 31863 407 85 aa, chain + ## HITS:1 COG:BH1268 KEGG:ns NR:ns ## COG: BH1268 COG4472 # Protein_GI_number: 15613831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 85 1 86 90 107 67.0 8e-24 MSSLDKTMHFDFNQNKGKNVYDTLQDVYNALEEKGYNPTNQIVGYLLSGDPAYIPRHNDA RNLILKHERDEIIEELVKSYLGKDK >gi|260196029|gb|ACQN01000038.1| GENE 24 31863 - 32309 467 148 aa, chain + ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 136 139 155 59.0 2e-38 MRLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKIVREYDVTGFVLG LPKNMDGSDGASVNRSKNYGKRLEEKFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRK EVIDQMAAVLILQNYLDLKRRNTDGSNN >gi|260196029|gb|ACQN01000038.1| GENE 25 32293 - 32607 468 104 aa, chain + ## HITS:1 COG:BS_yrzB KEGG:ns NR:ns ## COG: BS_yrzB COG3906 # Protein_GI_number: 16079792 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 12 99 5 90 93 73 50.0 7e-14 MAATINPGDDKDRQITLIDDQGNEELFEVLFTFHSDDYDKSYVLLYPAAIAEDEDIEVQA FSYDANADGDVTSSDLHEIESDEEWAMVQGVLNTFLDDDRLSGE >gi|260196029|gb|ACQN01000038.1| GENE 26 32656 - 35016 2601 786 aa, chain + ## HITS:1 COG:BH3106 KEGG:ns NR:ns ## COG: BH3106 COG1193 # Protein_GI_number: 15615668 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 4 786 3 785 785 597 43.0 1e-170 MNHKILKILEYPRITEKLAQEAITDTAKKQARDLQPSDNSVQVRIMLAQTRAVANLLRIR GQLPIVNFKPLDGSLKRLKVKASLNAEELANILLILTLAKEINDFIEKNVDAELDLRAID KILEDLDVPTELLSELKHSIDFDGSVLDSASNELAKLRHDIAANEEEIKNKMASLTKSAS KYLSEGLVTIRDDRYVLPVKQEFKGKLGGVVHDQSASGQTLFVEPEAVLNLNNRQQSLLA QERKEIRKILKHLSALAGEDREQLRNIGIALTELDFLQAKAKLAKKMKASEPMISDNHEV LLRQARHPLIDPEKVVPNDISLGIDFDTMLITGPNTGGKTITLKTLGLIQLMAQSGLFIP TNENSQVGVFGEIYADIGDEQSIEQSLSTFSSHMNDIIYIMKHVNKNTLVLIDEIGAGTD PEEGASLAIAILDELREHGAKIMVTTHYPELKLYGYNRDRTTNASMEFDVKNLTPTYLLQ VGIPGYSNAFAITRRLGMNEKVVKKAESLTKDSDSELNKMIARLNEQTKEVTAKRKFLAK NLEKSEELLKKLQDGLDIYNQRLQKQLEFANERANEVVAKKRKKAEAIIAELEKQKASGA AIKENKLIDAKGNFNKLAKEADNLANNKVLKREKKRHNVAVGDQVKVLSYGQVGTITKKL SEHDYEVQMGIVKLKVTDRDIEKEASKAPKKKQTIVRTTRKLNRANASSQLDLRGQRYEE AMVNLDRYMDTSLLAGLGSVVIVHGIGTGAIRQGVWQYLKSSRHVKSFNYAPANEGGNGA TIVELK >gi|260196029|gb|ACQN01000038.1| GENE 27 35108 - 35419 529 103 aa, chain + ## HITS:1 COG:lin1196 KEGG:ns NR:ns ## COG: lin1196 COG0526 # Protein_GI_number: 16800265 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 101 1 102 103 127 59.0 4e-30 MVEALTDQNFAEETKEGVVLTDFWATWCGPCRMQSPIIDQLAEERQDVKFTKMDVDENQS TAKNLGIMAIPTLIIKKDGEVVDRITGYTPKEKLDEILDQYTD >gi|260196029|gb|ACQN01000038.1| GENE 28 35467 - 35862 451 131 aa, chain - ## HITS:1 COG:no KEGG:lhv_0448 NR:ns ## KEGG: lhv_0448 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 131 5 136 137 152 60.0 5e-36 MQENNEHSYFINQLYRDFLLPTILGEDTKEILYWAGKKIANKYALSDTDSLIDFFQMAQF GDLKLISEKRVGATFELSGQIVEDRLNSDTKDFELEAGIISACLASENQRDCESNVVIND KEKKVQIIAQY >gi|260196029|gb|ACQN01000038.1| GENE 29 35951 - 36748 836 265 aa, chain + ## HITS:1 COG:L0120 KEGG:ns NR:ns ## COG: L0120 COG0796 # Protein_GI_number: 15673264 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Lactococcus lactis # 1 261 1 263 271 209 42.0 6e-54 MDNRPIGLLDSGLGGLTVLKKVMKKLPNEATVFIGDQAHMPYGDKTTEEVIELTRKSVDF LLSKNVKVIIFACNTATAAAMEVIQKEIAPQIIGVIQSGSLAAAKITKNNKVAVIGTHVT IESHAYSKEIKFRNPDIKVTELATPKLAPLVEAQRDFAYNVDVVRDSLDSLKGKDFDTMV LGCTHYPIIEKEISEIVGSTIKLVDPADQVAQYTENILKRDGMLAGEKGKHEYYTTGDCK KFTEIARKWLDDPQLVANHVETGER >gi|260196029|gb|ACQN01000038.1| GENE 30 36748 - 37365 424 205 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Shigella sonnei Ss046] # 1 198 1 194 197 167 46 8e-41 MNKVLLFATNNQNKVKELKAAFQKAGLDIEIKTNADLEAAPHVSENGSTFEENATLKAHT LAEFSKLPTLSDDSGLVVDKLNGAPGVHSARYGGEAHNDARNNAKLLASLGGIPEEERSA KFCSTFVLSMPGHFDKDLVVTGECEGVVLAIPRGHDGFGYDPLFYVPEKGKTFAEMTTDE KNEVSHRGKALKQLVEKLPAWLEQF >gi|260196029|gb|ACQN01000038.1| GENE 31 37376 - 37555 286 59 aa, chain + ## HITS:1 COG:SAS044 KEGG:ns NR:ns ## COG: SAS044 COG1942 # Protein_GI_number: 15926943 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Staphylococcus aureus N315 # 1 55 2 56 62 63 54.0 6e-11 MPFVHIELIKGRSPEQLENLMKDVTDAVHKNTGAPKEHIHVIINELGPHTYGQGGQWRA >gi|260196029|gb|ACQN01000038.1| GENE 32 37584 - 38405 894 273 aa, chain - ## HITS:1 COG:lin1012 KEGG:ns NR:ns ## COG: lin1012 COG0668 # Protein_GI_number: 16800081 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Listeria innocua # 4 269 3 268 281 144 34.0 2e-34 MYTLTSKIFSNWSIDWSSYLNNFINVIWQLAITTAIFLLINNFGKRVITKYFLKGKVKLN KRSQTIANLSTNIFQYTTLFFYLFGVLSILGVPVGTLIASAGIFSLALGMGAQGFVSDLV NGFFILSEDQYNVGDLVKIGTEKGTVVRLGIRTTCIKQVDGSLTYIPNRNILLVTNLSHG GTGGDIELNLLAKNDLNKVNELINQVNKQLKRNEKFLSTPPKNYGVTKQEGPNVTIQVHL QVIGGDSTEIKNNYLSSYIQAFQDAGIEFAHLT >gi|260196029|gb|ACQN01000038.1| GENE 33 38521 - 38946 576 141 aa, chain + ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 11 126 9 119 135 71 38.0 6e-13 MLISYGALAGLIAAVAFLLFVLFTIPVLLRTTKTLKKVEQTMDITNDALGKMSNDIDDIM KQTNDLLDKTNDLLEDVNSKMKTVEPVVQAAADLGESVSDLNSSSRKLATRFSEVNIKKT GLMTTILTSILARRRRRRGLD >gi|260196029|gb|ACQN01000038.1| GENE 34 38968 - 39297 427 109 aa, chain + ## HITS:1 COG:no KEGG:FI9785_505 NR:ns ## KEGG: FI9785_505 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 109 1 109 111 107 61.0 1e-22 MKKLGAFVFGTVVGAAAGLAAAAYLLPDETLEDLKQKINDNDTLNDLKKKYDNSTEIVKN QLAAFPKNVEDDSELKDFDDIVIDSTKHNLGSNENDDNETLSDLENAEK >gi|260196029|gb|ACQN01000038.1| GENE 35 39337 - 40449 1390 370 aa, chain - ## HITS:1 COG:L96847 KEGG:ns NR:ns ## COG: L96847 COG0006 # Protein_GI_number: 15673631 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Lactococcus lactis # 3 361 4 359 362 365 50.0 1e-101 MNLDKLQNWLAEHNVDAAYISNPITIAYFTGYEMEPEERIFALLAFKDAEPFIFCPALNV EEAKHSEWNGDVYGYLDHENPWQIIKSLVKKRTNSFKHWAIEENNLPVERYNFLRQAFNN SDFDTNLSEFIDHLRLYKTPEEIEKLKAAGAEADFAFQIGFDNIATGVTERYIAGQIDYQ LKLQKGVMHQSFETIVQAGENASNPHLGPTMNQIKPNELVLFDLGTMHKGYASDSSRTVA YGEPSDKQKEIYEVDREAQQAAIEAAKPGITAAELDAVARDIITKAGYGEYFIHRLGHGI GKNVHEFPSIMQGNDLVIEEGMCFSIEPGIYIPGVGGVRIEDCGVVTKNGFEPFTKTDKA LKYIPLRDKK >gi|260196029|gb|ACQN01000038.1| GENE 36 40598 - 41593 1103 331 aa, chain + ## HITS:1 COG:lin1640 KEGG:ns NR:ns ## COG: lin1640 COG1609 # Protein_GI_number: 16800708 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 6 331 3 333 335 308 51.0 8e-84 MHKQEVTIYDVAREAKVSMATVSRVVNGNNNVRKETRDRVMEVINRLHYQPNAVAQGLAS KRTTTVGLIVPDLTNLYFAELSKGIDDIATLYKYNIILSSTENKLLREEQVIQGLLNKQV DGVIYMGDRLSDEAAAAFERTNTPVVLAGTIDSREQFASVNIDYQKSDKESFNLLLENGC GEIALILADAEASINKENRIRAYQEFVEEHNLTKHIYQDIYSYQDGYDLYGKLEEDGIEG AVVTRNLSAVGIMNAALDDGKKIPDDLELITSNATVISEVVRPSLTNIKQPLYDIGAVAM RMLTKLMANEELEEKHMVLPYELVEKGSTTK >gi|260196029|gb|ACQN01000038.1| GENE 37 41638 - 43044 2026 468 aa, chain - ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 3 465 4 469 469 395 47.0 1e-109 MELDYKKLALAKKDDILKDLGELIAIDSSEDLANASEEYPVGPGPVKAMKKFLSFAERDG FDVQNFANYAGRVNFGEGKKRLGVIGHMDVVPAGDGWVTDPFKMIIKDGKIIGRGSADDK GPALAAYYGMLILKEAGFKPKKKIDFVLGTNEETNWVGIDYYLKHEPTPDQVFSPDAEFP IINGEQGIYTLVMNFKEVPGTGSVELLTFKAGIAANVTPQKAFASIKAANLSEIKSEYEK FLSDNKLEGKFEIAGDTANLELVGQGAHASAPQVGRNAATFLAVFLDTLDLAGTAKNYIH FLSSVEHEDFKGEKLGVAHHDDLMGDLSSAPSMFDFKKGEKAELLDNIRYPQGTDPDKMI KQVTEKYGDILEASFDGFEEPHYVPGDDPLVKTLLSVFEKQTGLKGHEVVIGGGTYGRLF EHGVAFGAQPEDAPMVMHQANEYMKVDDLIASIAIYAEAIYELTKDAE >gi|260196029|gb|ACQN01000038.1| GENE 38 43101 - 44480 1094 459 aa, chain - ## HITS:1 COG:lin0625_2 KEGG:ns NR:ns ## COG: lin0625_2 COG0584 # Protein_GI_number: 16799700 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Listeria innocua # 28 257 1 224 243 83 26.0 8e-16 MKLKKCLSWGLFLCLIFIINCGFLVVGHRGDPTKYPEETIQSDNSAFDSGADYVELDLHI SKDNIAVVSHDDDLERMVGTNAIVSQNTFETLSKLQYSNGEHVISLEQLFEYYKNKPNAK FILETKVDHGVDKSNNLEKVIATSIKKYHMENRVMIHSFSAKSLYYFSQLLPNVERIFIV GSLKRINYDTLQYVNAVNVSSDLIKKYPNLVKWLHGSGKKIFVWAEMDESPKLWNWLINN NIDGVVTNFPATGFKYKVAKEGSKQIEINKDATYLGFTNAKTIMNPYQPVANKTKLSFLE SIHVVNSVQVGNQLYYQLGGNSFVKADYISFDLNYDNLNPYFNAQVKSPSHTKVKVYLTP DHLSYLHKHLSFNKSYKIYGFSGTSKNLWIKTNLGWVQAREILFTNLPINSFAFSRYQLL DANTRYNNIELLSFTVLHDSYTHQFNPNLKSFLNHKALS >gi|260196029|gb|ACQN01000038.1| GENE 39 44560 - 44877 318 105 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0441 NR:ns ## KEGG: LGAS_0441 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 5 105 3 108 108 137 66.0 2e-31 MNQNYQTFDMIEEITRNDGSTYYEIANVEQNGIAELACDRGMIKEVRLLQLNIARTNALK TYEAYINKTYKFPTLTTLTKWEEWDKPKGKVLDAYNLILKSNHIG >gi|260196029|gb|ACQN01000038.1| GENE 40 44887 - 46275 1381 462 aa, chain + ## HITS:1 COG:lin2502 KEGG:ns NR:ns ## COG: lin2502 COG0737 # Protein_GI_number: 16801564 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Listeria innocua # 1 451 2 457 463 295 35.0 1e-79 MEKIRILHTNDLHSHFEKFPKIKRFLNAAQQDNTVDQVYTFDAGDFMDRSNPLSDATNGH ANIELMNQFNYDAVTIGNNEGISNPHEVVEHLFDYAQFPTVLANLREEDESMPKWCTSYK IFTTKKKTRIAVIGLTAPYPMTYGPNHWHVKMLGEVIPDLLTTLKGKYDILVGLTHIGVN LDSWIADKFPEFDLIVGGHTHTLLETGKWVNNTLIVQTGKWGRYVGDVNLIVDDHHKITS MKACVHETAQMAEQAQDLAESKALFEKGKQLLEREKIADLPALFADDKEEAVAVSLDAIA DFAGTDLAMLSTGLFLTPFKQGIMTRFDLQTCLPHPMHVVRTTLKGSDLWRLVMEIEKNR HFLRKFHLIGMSFRGKVFGEVYYRNIQVDMKTRLVYVNGEEIDPDRYYQIATLDHYILIP FFPTLAVVGENEFLFPKVLSQVIGEYLAKKYPIKKGEVSGRK >gi|260196029|gb|ACQN01000038.1| GENE 41 46262 - 46819 326 185 aa, chain + ## HITS:1 COG:SP0767 KEGG:ns NR:ns ## COG: SP0767 COG4470 # Protein_GI_number: 15900661 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 23 159 24 160 170 69 32.0 3e-12 MEENKHENTPILHHPLASVARLGDKLIINGRQYTIIANEKDAVDLELLRQKYDPYLDQYD FLVGDISSEHLRLKGFFQDWVRTSIDKKVSTIVDYLTEYCNPGSGYFILQLDEDNTHNEV SQSFKQKKTYNVRFRSKNNYHKKKNNSHYFRERKVKKTKFNSKKDYAQTKKGKHHVFVIK KRKDR >gi|260196029|gb|ACQN01000038.1| GENE 42 46826 - 47590 959 254 aa, chain + ## HITS:1 COG:BS_yutF KEGG:ns NR:ns ## COG: BS_yutF COG0647 # Protein_GI_number: 16080282 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Bacillus subtilis # 1 252 1 252 256 219 42.0 3e-57 MKQYQLFLIDLDGTIYRGKDTIESGVNFVKRLQEKRLDYIFLTNNTTRTPQMVVEKLAGH GINTDIQHIYTPCMATSSYILSERKSAKVYIIGQIGLWNELLSHPEISFDDQNPDYVVVG MDTDLTYHKIRTAVRHIRNGAKFIGTNSDLNLPSGDELLPGNGSICKMIEVASGQKPLFI GKPSNIIVEKLLEKTSYHKQDCLIVGDNYLTDIHAGFNSGVDSLLTLTGVNKREDIIDKR QPSYIVNNLDEFEL >gi|260196029|gb|ACQN01000038.1| GENE 43 47587 - 48094 363 169 aa, chain + ## HITS:1 COG:L157321 KEGG:ns NR:ns ## COG: L157321 COG4478 # Protein_GI_number: 15673126 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 16 169 9 165 205 78 35.0 8e-15 MKRKKLIGNNAYNPIFHFFMGVASAVTGTILLSWPLLALFVKVQKTYETVNLTVGQVMHN YSQLLWFLLWPFKQELKMDNFASSANAIEHFTECKHLFELAVIVFILGLIVLRFKSNFDY LSKTWALIFMLIPVVVVPFAVANFDTFFVTFHHMIFHNNNWLFNPLTDP Prediction of potential genes in microbial genomes Time: Wed May 25 14:12:23 2011 Seq name: gi|260196028|gb|ACQN01000039.1| Lactobacillus jensenii 115-3-CHN cont1.39, whole genome shotgun sequence Length of sequence - 29141 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 13, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 1166 - 1225 8.1 2 2 Op 1 8/0.000 + CDS 1268 - 2269 1306 ## COG0078 Ornithine carbamoyltransferase 3 2 Op 2 2/0.400 + CDS 2283 - 3197 1208 ## COG0549 Carbamate kinase 4 2 Op 3 3/0.200 + CDS 3244 - 4470 985 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 + Term 4476 - 4519 7.4 5 3 Tu 1 4/0.200 + CDS 4527 - 5945 1559 ## COG0531 Amino acid transporters + Term 5965 - 6008 6.4 + Prom 5979 - 6038 9.6 6 4 Tu 1 . + CDS 6062 - 7489 1222 ## COG0531 Amino acid transporters + Term 7497 - 7524 0.1 - Term 7485 - 7512 0.1 7 5 Tu 1 . - CDS 7585 - 9030 1846 ## COG0366 Glycosidases - Prom 9071 - 9130 7.6 + Prom 9002 - 9061 8.5 8 6 Tu 1 . + CDS 9172 - 10122 691 ## COG1609 Transcriptional regulators + Term 10138 - 10174 5.1 + Prom 10247 - 10306 7.8 9 7 Op 1 . + CDS 10340 - 12526 2557 ## COG3345 Alpha-galactosidase 10 7 Op 2 . + CDS 12559 - 13962 1887 ## COG2211 Na+/melibiose symporter and related transporters + Term 13966 - 14037 10.6 11 8 Tu 1 . - CDS 13996 - 15033 1066 ## COG1609 Transcriptional regulators - Prom 15135 - 15194 7.1 + Prom 15136 - 15195 9.8 12 9 Op 1 35/0.000 + CDS 15219 - 16469 1254 ## COG1653 ABC-type sugar transport system, periplasmic component 13 9 Op 2 1/0.600 + CDS 16490 - 16855 280 ## COG1175 ABC-type sugar transport systems, permease components 14 9 Op 3 38/0.000 + CDS 16810 - 17364 627 ## COG1175 ABC-type sugar transport systems, permease components 15 9 Op 4 21/0.000 + CDS 17379 - 18212 781 ## COG0395 ABC-type sugar transport system, permease component 16 9 Op 5 . + CDS 18234 - 19343 1559 ## COG3839 ABC-type sugar transport systems, ATPase components - Term 19372 - 19438 5.6 17 10 Tu 1 . - CDS 19503 - 20525 682 ## COG1609 Transcriptional regulators - Prom 20560 - 20619 8.3 + Prom 20723 - 20782 33.0 18 11 Tu 1 . + CDS 20958 - 27212 7910 ## LGAS_0143 adhesion exoprotein - Term 27529 - 27562 5.1 19 12 Tu 1 . - CDS 27570 - 28187 570 ## gi|256852184|ref|ZP_05557570.1| predicted protein - Prom 28220 - 28279 10.3 + Prom 28214 - 28273 8.8 20 13 Tu 1 . + CDS 28501 - 29031 459 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 Predicted protein(s) >gi|260196028|gb|ACQN01000039.1| GENE 1 152 - 1003 895 283 aa, chain - ## HITS:1 COG:no KEGG:LAF_0297 NR:ns ## KEGG: LAF_0297 # Name: not_defined # Def: two-component response regulator # Organism: L.fermentum # Pathway: Two-component system [PATH:lfe02020] # 1 280 1 278 283 287 51.0 3e-76 MNFYIVDPNKENRDNLRNLIEADYDSIVVGTAGESNRAYSEIIQLHIDILIINYNLDEKE KGLELINKLKNVGSRPRFLMICPKLSSQEMQNIYDSSVDLIIASPLNLVEARQMIRLISS YAMLLNRLNQIYEISSSSIAPYTRPQALHREQTDHIAQVLRFLGIAAEAGIDDIMKICNI MCDQNIEFSQINFERDLHITEHDKRIIFQRIRRSLKVGISNLANMCIDYPENDILLDYAN NLFEYRNIHSEMRKLNGENAKPVQISLQHFFNGLLQESYRVKK >gi|260196028|gb|ACQN01000039.1| GENE 2 1268 - 2269 1306 333 aa, chain + ## HITS:1 COG:SA1012 KEGG:ns NR:ns ## COG: SA1012 COG0078 # Protein_GI_number: 15926752 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Staphylococcus aureus N315 # 4 333 3 332 333 502 72.0 1e-142 MAFNLRNRSFLTLADFNTREMEYLLNLSEDLKKAKYAGTEQQHLKGKNIALIFEKASTRT RCAFEVGAKDQGAHVTYLGPSGSHIGYKESVKDTARVLGGMFDGIEYRGFSQRSAETLAK YSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKEYRDIKFAFVGDGQDNVSNALMLGSAVM GMEYHVVTPKELNPDPEVLAKANKIAEKTGAKIVVSNDIKEGVKGMDVIYADVWVSMGEP DEEWERRIKLLKPYQVTKEVMEATENPHAIFEHCLPAFHNLDTAVAKKIKDKYGLSEMEV TDEVFESPQSVVFREAENRMHTIKAVMVATLGD >gi|260196028|gb|ACQN01000039.1| GENE 3 2283 - 3197 1208 304 aa, chain + ## HITS:1 COG:SA1013 KEGG:ns NR:ns ## COG: SA1013 COG0549 # Protein_GI_number: 15926753 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Staphylococcus aureus N315 # 2 302 3 308 310 387 66.0 1e-107 MKVVVALGGNALGKTPEEQLKLVKQTAKSLAGLIKAGHQVVISHGNGPQVGQINLGLSYA AEHGEGASFPFPECGALSQGYIGYHLQQSLKNELPDKDVATLITQILVDEKDHAFQNPTK PIGSFYSKEEAEKLAEEKGVTFKEDAGRGYRQVIASPLPEKIIELNSIKTLIENGTIVIA GGGGGVPVIKTESGLKGVPAVIDKDRSSALLADNISADTLIILTAVDYVYVNYNKPDQKT LKDLSVSEAKEYIAEKQFATGSMLPKVEACLSFVENHPERKAIITSLAGLDDALAGKLGT VIHN >gi|260196028|gb|ACQN01000039.1| GENE 4 3244 - 4470 985 408 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 5 407 6 409 409 384 49 1e-106 MTSGIHVTSEIGKLKTVMLHRPGKEIENITPDYMERLLFDDIPYLPIAQKEHDYFAQTLR DQGIEVIYFEKLAAEALADEKVRHEFLERMIAESGYIAGATKEALMEYLGSMNVQDMVNK IIEGVRIEDVEIKNPDLQSLSEDTDWPFLMDPMPNAYFTRDPQASIGNGISINRMTFKAR QRESLITEYIIKYNERFAGKVPVWRDRNHATHIEGGDELVLSNHVLAIGISQRTTADAIQ DIAKNLFKDSDYDTIIAIHIPHNHAMMHLDTVFTMINYDQFTVHPAILNEDGKVDNWVLH PGKDGEITIEHHTDIKAVLKEALNKPEIDLIATGNGDKIVAPREQWNDGSNTLAIAPGEV VTYDRNYVSNDLLRKHGILVHEVRSSELSRGRGGPRCMSCPIVREDID >gi|260196028|gb|ACQN01000039.1| GENE 5 4527 - 5945 1559 472 aa, chain + ## HITS:1 COG:L94890 KEGG:ns NR:ns ## COG: L94890 COG0531 # Protein_GI_number: 15674017 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 2 461 4 476 490 331 41.0 2e-90 MEKEKGISRVELIALIVSSCIGTGIFGITSDVSKAAAPGPALLAWLFVGLGILALVLCLN NLSQKRPDLEAGIFSYAGAGFGPLGEFISGWSYWLSAWLGNIAFATMLMSAIGTFVPLFA GGQNVPSIIGAIIFCWLLTILVNHGVESASFINFIGTIFKIVPLVLFVILMVIFFKGGMF TTDFWGQVLNNMSKGTVTGSIGEQVKGSLMTMIWVFIGVEGASVMAHRAKTRKEAEQASI IGFILLVLIYVLISILPYGTLTRAQLASAGQPALGYVLKNVVGQWGATIINLGLIVSTII SWLSWTMLPAETTMLAAEDKAMPKVWGKVNAKGAPTASLYITAILQTLFLFSLLFTQEAY EFAYSLCTAAILFSYLLVGLYQMKFSAGRKEWGQFTIGLLAAGFQLACMFLAGWQEVLLV SISFIPGFIIYYQACRENRRSISLSEKLVMGVILLLSLVSIMFIMTGVIKIG >gi|260196028|gb|ACQN01000039.1| GENE 6 6062 - 7489 1222 475 aa, chain + ## HITS:1 COG:L94890 KEGG:ns NR:ns ## COG: L94890 COG0531 # Protein_GI_number: 15674017 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 466 1 479 490 330 42.0 3e-90 MRTIKKRAIGKLELVALIVSSCIGAGIFGITTDISTAAAPGPAILAWLFVGLGILFLVLS LNNLSQKRPDLESGVFSYAHEALGPLAEFIAGWTYWLSDWLGNIAIATMMMSALGTFFPI FGNGQTIAAILFAIVVGWILTYLVNEGVENAAFINTIGTFFKICPLILFLIFVIISFKAG LFTANFWGNAFDNLNGSFKVGNLWSQIRASLLTMIWVFIGIEGASVMAHRAKTRKEAEFA SIVAFILLFLVYVLISILPYGVMTQAQLAKAGQPALGAILTKLIGWPGTIIINIGLIVST FISWLSWTLLPAESTMLLARDKVLPPFWGKTNKKGAPKDSLILTASLQSIFLFSLLFTKQ AYEFAYSLCVAASLFTYLFVCIYQMKLSRKENNWGQLLIGLLGALFQLCCMILAGWKQVL LVTVSFIPGFYLYYKARKYYQKTISLSEKLVMIFLLLLSILAIYLVIAGTIKISG >gi|260196028|gb|ACQN01000039.1| GENE 7 7585 - 9030 1846 481 aa, chain - ## HITS:1 COG:SP1894 KEGG:ns NR:ns ## COG: SP1894 COG0366 # Protein_GI_number: 15901721 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 480 1 480 480 642 66.0 0 MKLQNKVMLITYPDSMGHNLKDLNFVLENYLKGAIGGLHILPFFPSAGDRGFSPMTYDKV DDQFGDWSDIEALSSKYYTMFDFMINHLSKHSEYYKDFVKNKDKSKYKDLYLNWDKFWPE NRPTQADVDLIYKRKDRAPYQTIEFADGSKTNIWNTFGEDQLDLDIRTDTTKKFVKDNLV NLANHGASLIRLDAFAYAVKKLDTNDFFVEPEIWDLLKEANDDLKGTDAQLLPEIHEHYK YPFKVSEHGYFIYDFALPMVLLYSLYNGKSKRLADWLRKSPMKQFTTLDTHDGLGVVDAK DILSDDEIDMTTNELYKVGANVKRKYSSAEYHNLDIYQINTTYYSALGDDDKKYFISRLV QVFAPGIPQVYYVGLLAGQNDLKLLEETKEGRNINRHYYEVDEVADEVKRPVVAKLLNLL RFRNEEEAFDLEGSIDITTPSESQIQIVRENKDKTRKAVLNLDLASLEYSVEVNGKSVDF N >gi|260196028|gb|ACQN01000039.1| GENE 8 9172 - 10122 691 316 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 314 1 316 321 183 36.0 5e-46 MSANIKDVAREAGVSIATVSRFINQNGYVAASTAKKIENAISKLNYQPKNEIRKPSTTKA IGIVFPSIKNPLFSELFTYLESNLKNKGYNCTLFIDNNENHKLEDYVSLILDGQIKGIIN SSPLKIDKVNYPGIPIVTFDRNLGPNIPFVSCNNLDGGFKIAKAVVEKGCKKILILSGNR QDYFPITDRIKGMMKVFNYHELEIKTAYTDFEGSEIAKKIQIDGLIKNKKYDAICTTDDI TALFVREQAKLINYSPIITGFDGTKFINHLFPELITVRQPTEELANLLTEICLNQIENYK ENIEKKYILPVELVNK >gi|260196028|gb|ACQN01000039.1| GENE 9 10340 - 12526 2557 728 aa, chain + ## HITS:1 COG:BH2223 KEGG:ns NR:ns ## COG: BH2223 COG3345 # Protein_GI_number: 15614786 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Bacillus halodurans # 2 728 3 744 748 686 47.0 0 MISFDEKQKVFNLTNASISYLFSIEEGGLLGHLYYGPKIRAYHGERFYPRIDRGFSGNLP DSLDRTYSKDDLLQEYSGNNTGDFRLPSIVIKTKNGARMTDFRYQSYKIINGKPKLEGLP QSYVESDQEAQTLEVTLRDDVIKADLVLTYTIYRDRPVITRNARLINCGSEAFQVEKLAS MQLDLTKQNYDLVYLPGQYGVERQTRRKSIDQGIFEMSSRRGASSHHMNPFAAIVDKDTD EFHGNVMATLLVYSGNFKISLESDQIDQIRLLVGINDDNFSWKLNPGESFQTPEAINVYS TKGLNGMTQVFHHLLRERVARGKWRDRERPIIINNWEATEMNFDAAKLDQIVEEAKPLGI EMFVLDDGWFGHRDDDNSSLGDWYVNTKKIDLHKVAKQTHDAGMKFGLWFEPEMISKDSD LYKTHPDYVLHEPGRGMTLARNQLVLDFSRPEVVDNIFDQICKILDDVDIDYIKWDCNRN LTEVYSAAYPADQEGEIAHRHILGVYSLMEKLIERYPDILFESCSGGGGRDDAGLLYYMP QCWPSDNTDANERLRIQEGTSLVYPISSVTGHVSAVPNGHTNRITSFKMRGDVAMSATFG YELDPSALTEDEKAEVKKQVAFYKEHRKLIQFGDFYRLQSAFAGNHVAWEFVSPDKSEAL LFMYRKLSSVRYEIVNTKMYALDPDKNYQDSVTGKIYGGDELMNLGLFRNPTHKGDFISE VHYFKAVK >gi|260196028|gb|ACQN01000039.1| GENE 10 12559 - 13962 1887 467 aa, chain + ## HITS:1 COG:STM4299 KEGG:ns NR:ns ## COG: STM4299 COG2211 # Protein_GI_number: 16767549 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 8 453 9 443 476 131 24.0 3e-30 MQKWKNTVAYGLGAFGHDSFYGIWNTYLLMFITSIMFSGGDKNYTTHMVAITTMIIMVVR IIELVLDPFIGSMIDKTNSKWGKYRPWILGTGLILGLGSPFLFTTMNGLATKNGHLFLIL FTIMFFALYIVYAFKDISFWGLLPAMSLSSDDRGFTATGARIGSTIGGNIITVLYAVLLT YFSGSSNFNEHGWFMFALIIGLTQFVGAAFTAFGTKEKASVVTDQNQKEITIGQIFKTIG TNDQLGWMSLSYIIYGLGTSITNSFMLYYFRYVLDAQDKWQYVGWLGIFSGFVSIISYPF LAKYFGRRKIMIGSMLTMVLAYIIYSFTQNVAMTLVAQLFYTLAGPLVFMVLLLTIADCV EYGQLKTGHRSEAATSAVRPMLDKFNGAVTTGLTGVIAGIVGMTGNVAASSITAHDIFLF KTFAFYIPLVTTIVGMIIFMAKVKLDEKMHNEIVNKLAKDIKAEKNE >gi|260196028|gb|ACQN01000039.1| GENE 11 13996 - 15033 1066 345 aa, chain - ## HITS:1 COG:BH2227 KEGG:ns NR:ns ## COG: BH2227 COG1609 # Protein_GI_number: 15614790 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 336 1 333 347 161 29.0 2e-39 MTSIREIARKAGVSPATVSRVLSQDKTFSIKDSTRKKVLEVANNLHYDPRPNRLLININN KKRKIIILCALSVEQLNRDLYFSNISQGLQEEANASHYTISSFIHFPKPNFDFSSVKNFD GIVIIGTFSSKFIKRVSLYNPNIVIIDEYRHFDEYDLIRNNYFELTNRVLNILYQRKYTR IGFIGGYLNEMTHTHLSKKMNIDPRTKAYETWMKLHNLPINEVITNWTLDEGYSAMDKLL NSSNPPKIVLVASDVLAMGAYRSIHLHQKEIPTDIQIISYNNSEVASYLVPSLSSISAPS YQMGQAAIRLLHDRFINHRTIPYQLLLPSKFIERESSIANKKNRI >gi|260196028|gb|ACQN01000039.1| GENE 12 15219 - 16469 1254 416 aa, chain + ## HITS:1 COG:SP1897 KEGG:ns NR:ns ## COG: SP1897 COG1653 # Protein_GI_number: 15901724 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 3 414 2 416 419 461 53.0 1e-129 MKKWLKLVAGGIIALAFLSLTGCRKQDASSNKKVTIEFFNQKREMQATLKKMIKKFEKEH PNIRVKETDVPSAGDVLKVRMLSGDAPDVINTYPQNLDYQTWAKVGYFVDMTHKSYIKNI VNNYAEKFAINGKIYNAPLSANLYGFYYNATEFEKLGLKIPQTWSELEHLVKEIKAKGKT PFAIAGTEPWTLNGYHNLSLATVTGGFNQAENLIRYSPVNSISLNNKYIQADIQRLDLLR GNGQKNWKGASYNDAVMAFTSGKALIMPQGSWALAVIKTQNPKFKIRTFAFPGNKPGQEM TVGSGDMALSISSRSKHKKAADEFLKFMCSPEAMQMYYDQDGSPCTIKGVKQKGIDSELG GLSKYAFTKKHMVWLGQKWTTENDFFNLTGNYVLTGDKKQLISDFNTTFNPMKATN >gi|260196028|gb|ACQN01000039.1| GENE 13 16490 - 16855 280 121 aa, chain + ## HITS:1 COG:SP1896 KEGG:ns NR:ns ## COG: SP1896 COG1175 # Protein_GI_number: 15901723 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Streptococcus pneumoniae TIGR4 # 2 121 8 127 296 150 65.0 5e-37 MTLKKFAAKYWGWTFLIVPIILQIIFFYFPMVQGAFYSLTDWNGFTYNFNFVGLNNYRIL FMDAKFMKAIGFTLLLTVCLIVGEIAFGILIARALNAKIKGRLFWRAWFFFPAVLSGLTV S >gi|260196028|gb|ACQN01000039.1| GENE 14 16810 - 17364 627 184 aa, chain + ## HITS:1 COG:SP1896 KEGG:ns NR:ns ## COG: SP1896 COG1175 # Protein_GI_number: 15901723 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Streptococcus pneumoniae TIGR4 # 3 183 116 296 296 230 66.0 1e-60 MVFLPGRFIRIDSFLIFKQVFNYGLPAIGNWLHLDFLTDSILGNQVGAIIAVIFVMLWQG IAMPVIIFLAGLQSIPDEIKEAAAMDGANNTQIFWKIELPYLLPSISMVFIMALKAGFTA FDQIFALTSGGPTDATTSIGLLIYNYAFKNNQYGYANAIALVLFVVIALISILQVKLSNK YEVQ >gi|260196028|gb|ACQN01000039.1| GENE 15 17379 - 18212 781 277 aa, chain + ## HITS:1 COG:SP1895 KEGG:ns NR:ns ## COG: SP1895 COG0395 # Protein_GI_number: 15901722 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 12 277 13 278 278 382 75.0 1e-106 MQSKREPGNFWKYVLLISGGILILVPILYSFLSSFKTTKQIMANFFAFPNPWTWANYEHL FADGIGGYFWNSIVISICSVIVVMLFVPMAAYSIARNMSKKRAFNIMYSLLILGIFVPFQ VIMIPITVLMNRIGLANMWGLIILYLTYAIPQTLFLYVGYIKLSIPESLDEAAEIDGASK WITYFKIAFPLMKPMHATTLIVNAMWFWNDFMLPLLILNKDNRMWTLPLFQYNYTGQYFN DYGPSFASYVVGIITITIVYMIFQKNIIAGMSNGAVK >gi|260196028|gb|ACQN01000039.1| GENE 16 18234 - 19343 1559 369 aa, chain + ## HITS:1 COG:SP1580 KEGG:ns NR:ns ## COG: SP1580 COG3839 # Protein_GI_number: 15901422 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 1 368 1 375 376 513 66.0 1e-145 MVKVDLDHVYKKYDNATDYSVTDFNLHINDHEFIVFVGPSGCGKSTTLRMIAGLEEISKG TLKIGGKVMNDIAPKDRQIAMVFQNYALYPHMSVYDNMAFGLKLRHYSKEEIDKKVKSAA EVLGLAHLLDRKPAALSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAKLRVSMRAEIAK LHQELKTTTIYVTHDQTEAMTLADRIVVLKDGKIQQVGSPLEVYNKPANVFVAGFIGSPA MNFFRVILKDGKIIDKNNQDFAIPVPEGKLKILKEKGYDNKEIIFGIRPEDVHTEEVFLQ AFPETVVNATVTVSELLGSETQLYTKVGESELVSRVDARDFTKPGSMVQMGFEMNKAHFF DAETELTID >gi|260196028|gb|ACQN01000039.1| GENE 17 19503 - 20525 682 340 aa, chain - ## HITS:1 COG:BH2227 KEGG:ns NR:ns ## COG: BH2227 COG1609 # Protein_GI_number: 15614790 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 333 1 333 347 176 34.0 7e-44 MTSIREIARKAGVSPATVSRVLNRDKTFSIKNSTRQKVLNLAKSLHYELKPNRPSNGPKR KIIVLCALSVETLNRDLYFSDIKKGLYKEADISHITVVNFIHFPDSKFRFSDLKKFDGII VIGTFTSNFLEHVAKYNTNVVIINEPRDFEKFDLIRNNYYSYTNKILDLLFERNFHKIAL IGGAVNQMDCLGLSDESCIDPRSRAYRSWMKSHDLPIQEIATDWTLEAGFNAMEKLLSTK NTPEIVIASSDLLAVGAYRAIHLHQLKIPDDIQLISFNNSEVASYLVPSLSSINAPTLEM GKAAIRLLNDRFINQRTQAWQVVLPSKFIERESSYSNLDN >gi|260196028|gb|ACQN01000039.1| GENE 18 20958 - 27212 7910 2084 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0143 NR:ns ## KEGG: LGAS_0143 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 863 1981 1565 2687 2823 319 29.0 7e-85 MSFFNDRLCEEINEIQRFSFRKTSIGLASFAISSLIFLNWSTGYALADTSSSINSLKLNN TSKIENSDTPIISKNVEVNSAKDKLNREIDTAQKAGFNIKQDSDKVIKVNDEVDGLEKVQ ADYAEQASDIKQQIKDNQSKLNEWQDQREEQEAAFKQGHAVEATDHAYVENTFEYNSHAD SVKLYKVTKSNDGKELKEEIQLSGTNTQNKEPRNFDEPSNPNRLQYAEVDSNTHLYARWS NVVLDTATNKKYDMVVELSDAVIDKRELYGNPTKNEKGIIEIFRDPSSGLAFNYITALKL TKYLVESGTDNLYEGEDYFTQDTLNRQLPDSEQPLNKRYKAENQRAEFIKPVEGAIAAFV PKGSAMEAVEHDISNGNSGAKSLIEEVNSSLPKNKQLSESVFISKGAEVKINDESQITYP VKESMVFLTKGKASFLLGVINPINNGDPEDVYVGPDVRKHRVRADYTQVGLGILDKNDFK SVEKPTITYHRTLVKSPVSLTKTIHYIDNNGKEVKDSVSSSVTVYKTFDPTNPLDSSVIS YESTDSKIPVNSTGKVILPGAEVPLIKGAYAKIVPSEANNDSEVSVKNPTREYNIVYNSF GKIIPVDESGKEIQGADTPTYNNNSDDPTKAGDTTTPTVPGYTATKTTVSGSDITNPGDN TKVIYTANNKTTNIVFKDQDNNNKVVNTVPVDGYTSETVPVDGTKTTIPDGYELVPGNQV PTTITFAGGDSTTPDIVVYLKHKHTITTKNINKKITYQTTDGNTVADSYKTSITIAQDVD EATNTATYKVNGEITTKADLTSQDVPAAPTGYHLDTNQSTGDYNKSTSYDLTNQFNTLTD GQTVNAKVVYAPDKQTITVTVHDSETNTDVTIPTIIPTNFDGTTSGTVDITDGINKIKIY LTTHGYTVPDTVEVPKNFDNTDNGDSNTDKTPQPVTITVGHKTTEVKPDSPKTTDDNLPD NPDKKYPSGVTATDLNKTITRTILEVDPVTKESKTVATQTVHYTRTATVDEVTGKVAYTN WATTDKWASYTAPDKPGYTPSQKSVDETTPSVTDKDQTVTITYSANPTNTNVVFVDDNDN GKTVKTVTVDGTTGGTTPLSSDDQKIPAGYELVPGNTIPTEIKFNNDGSQTPNTTIHLKH KTITVNSDSPKTTDDNLPDNPDKKYPSGVTATDLNKTITRTIVEVDPVTGEKKTVATQSV HYTRTATVDEVNGKVTYSDWTTTDKWASYTAPDKPGYTPSQTSVEEATPAVTITYTGNPT NTKVIFVDDNDNGKTIKTVPVNGVTGGTTPLSSDDQKIPDGYELVDGNKVPTEIKFNNDG SQTPDTTIHLKHKTVDVTPDSPAQPGDKLPDNPNKYYPDGVDTTKVVTRTINVHKPDGTT ETITQTVTFTRTVTVDEVTGKVISSTPWTSTNPDYPEYTVPSIDGYTPSQSTVKKVTPKD TDSNSTVDVTYTGNTQTIKVVAVDKTTGKEVTVDVPTTFNGKSDENVGSDVTDGVEKIKN YLKNQGYTVPETIEIPTNFDHSQSADSTKDDQPQVINITVDHTHSSSTEDKTVTRTIIVK NPNGTENTTKQTVIFTRTVTTDNVTGDKTYSSWTTDGTSDWNEFTTPTVAGYTPSQSIVE KVTPSADDSNQTITIDYSADKQVLKLRAYDVNIGSAVEIELPSSLTTEVDGASNGTVDVD NVNTLSEAIKSYLASKGYSFVSSTEAPTKLDTDDSATQYVDLTFNHAITPATEDKTVTRT IIVKNPDGTENTTKQEVTFTRTVTTDNVKGDKTYGSWTTDGTSDWNKFTTLTVAGYTPSQ STVEKVTPSADDSDQTVTIDYSADKQTIVINYVDKDSNNKLLTSVTLTGFTGDKVEYSTA ETIKNFENAGYELVSDNFSNNAYYLAKMQIFTVVLKHDPILKVETKQFTYTVHYVSTDGV SVPEDNVQVSTWKRTISKDLVTGIETPITSWTSNINKYKEVITPEIARHYADTLMVDSKN VLQKNIVVTVTYKPEIVLNNDGEFSKSKISNKLEKENEQRKINNLMSNKPISNAQSLNLS QKSLINYDKNLPQTGNHEKLVQILGIGLVTTSLLFKLLGNKKEN >gi|260196028|gb|ACQN01000039.1| GENE 19 27570 - 28187 570 205 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852184|ref|ZP_05557570.1| ## NR: gi|256852184|ref|ZP_05557570.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 205 1 205 205 389 100.0 1e-107 MKSLTLFLDDVFVKIIEDDTFSISFHNCQPEDFEITPGENTTIKQIHSSQGLFIKKKYFS LSFKSKDEVTSIIELKLPSLEHLNGICDVGGISLRNLTVNTIDIQVDSGLVYLNNIHAEK VSITCDTGTVNADKLIVSDHCDINVDSGTLFIKNSLTSLCGYDIKCETGISKLFGSVKIR GDKRLFKAGVPMYRLRNDTGLCTIE >gi|260196028|gb|ACQN01000039.1| GENE 20 28501 - 29031 459 176 aa, chain + ## HITS:1 COG:MA1614 KEGG:ns NR:ns ## COG: MA1614 COG2110 # Protein_GI_number: 20090472 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Methanosarcina acetivorans str.C2A # 7 162 26 181 195 158 51.0 6e-39 MKEIELSKNIFVVKASVVNFPADAIVNAANKTLLGGGGVDGAIHQAAGPNLLEACKKLNG CDTGEAKITPSFDLKTCKYIIHTVGPVFKLSQNPQQQLQSCYKKSLDLALEYKCNSVAFS GISTGVYEYPVKQAASVASEAVAEWLKRHNFAIKVFLCCYKESEFEAYAQLVRTTK Prediction of potential genes in microbial genomes Time: Wed May 25 14:13:10 2011 Seq name: gi|260196027|gb|ACQN01000040.1| Lactobacillus jensenii 115-3-CHN cont1.40, whole genome shotgun sequence Length of sequence - 42763 bp Number of predicted genes - 34, with homology - 34 Number of transcription units - 18, operones - 9 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 9 - 68 5.5 1 1 Tu 1 . + CDS 111 - 1604 1620 ## COG3104 Dipeptide/tripeptide permease + Term 1612 - 1642 2.0 - Term 1598 - 1628 2.0 2 2 Op 1 . - CDS 1656 - 2546 1107 ## COG1250 3-hydroxyacyl-CoA dehydrogenase 3 2 Op 2 . - CDS 2556 - 3383 1074 ## LSL_0135 acetoacetate decarboxylase (EC:4.1.1.4) - Prom 3421 - 3480 11.2 + Prom 3359 - 3418 6.5 4 3 Tu 1 . + CDS 3583 - 4233 730 ## COG0778 Nitroreductase + Term 4243 - 4286 6.9 + Prom 4253 - 4312 7.9 5 4 Op 1 . + CDS 4374 - 5042 701 ## COG0518 GMP synthase - Glutamine amidotransferase domain + Term 5051 - 5096 8.9 6 4 Op 2 . + CDS 5117 - 6097 1017 ## COG0673 Predicted dehydrogenases and related proteins + Term 6111 - 6155 7.1 + Prom 6130 - 6189 6.0 7 5 Tu 1 . + CDS 6219 - 10406 4659 ## COG3513 Uncharacterized protein conserved in bacteria + Term 10421 - 10471 10.7 + Prom 10437 - 10496 6.2 8 6 Op 1 4/0.200 + CDS 10637 - 11545 662 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 9 6 Op 2 . + CDS 11523 - 11828 255 ## COG3512 Uncharacterized protein conserved in bacteria 10 6 Op 3 . + CDS 11825 - 12493 612 ## LSL_0100 CRISPR-associated Csn2 family protein + Prom 15009 - 15068 8.0 11 7 Tu 1 . + CDS 15274 - 17658 2722 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Term 17680 - 17714 6.1 + Prom 17661 - 17720 8.6 12 8 Op 1 . + CDS 17751 - 18161 308 ## COG0242 N-formylmethionyl-tRNA deformylase + Prom 18164 - 18223 2.6 13 8 Op 2 . + CDS 18243 - 19928 643 ## LAR_0278 hypothetical protein + Term 19934 - 19972 1.5 - Term 19923 - 19961 1.5 14 9 Tu 1 . - CDS 19968 - 20612 711 ## LGG_01093 hypothetical protein - TRNA 20772 - 20855 54.4 # Leu CAG 0 0 15 10 Op 1 . + CDS 20928 - 21773 343 ## PROTEIN SUPPORTED gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 16 10 Op 2 . + CDS 21785 - 23053 1076 ## COG1686 D-alanyl-D-alanine carboxypeptidase 17 11 Tu 1 . + CDS 23129 - 25225 1936 ## COG4990 Uncharacterized protein conserved in bacteria + Term 25356 - 25404 -0.6 + Prom 25399 - 25458 3.9 18 12 Op 1 . + CDS 25485 - 27161 2147 ## COG0018 Arginyl-tRNA synthetase 19 12 Op 2 . + CDS 27231 - 28142 1196 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 28165 - 28202 5.7 20 13 Tu 1 . - CDS 28170 - 29033 1277 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family - Prom 29104 - 29163 6.0 + Prom 29036 - 29095 6.5 21 14 Op 1 . + CDS 29118 - 31175 2330 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 22 14 Op 2 2/0.400 + CDS 31187 - 31549 588 ## COG3679 Uncharacterized conserved protein 23 14 Op 3 5/0.200 + CDS 31552 - 32775 949 ## COG0420 DNA repair exonuclease 24 14 Op 4 3/0.200 + CDS 32756 - 35170 1946 ## COG4717 Uncharacterized conserved protein 25 14 Op 5 . + CDS 35180 - 36154 1039 ## COG3481 Predicted HD-superfamily hydrolase + Term 36157 - 36208 10.1 - Term 36140 - 36196 9.0 26 15 Tu 1 . - CDS 36211 - 37119 1214 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 37154 - 37213 5.8 - Term 37271 - 37306 3.1 27 16 Op 1 . - CDS 37316 - 37669 479 ## gi|256852156|ref|ZP_05557542.1| predicted protein 28 16 Op 2 . - CDS 37701 - 38132 435 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases + Prom 38044 - 38103 9.5 29 17 Op 1 7/0.000 + CDS 38217 - 38960 244 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 30 17 Op 2 . + CDS 38953 - 40137 874 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 31 17 Op 3 . + CDS 40146 - 40799 818 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 32 17 Op 4 2/0.400 + CDS 40861 - 41181 425 ## COG0526 Thiol-disulfide isomerase and thioredoxins 33 17 Op 5 . + CDS 41200 - 41847 814 ## COG0073 EMAP domain + Term 41851 - 41916 13.0 + Prom 41955 - 42014 9.0 34 18 Tu 1 . + CDS 42037 - 42564 230 ## LGAS_1300 hypothetical protein + Term 42584 - 42613 1.4 Predicted protein(s) >gi|260196027|gb|ACQN01000040.1| GENE 1 111 - 1604 1620 497 aa, chain + ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 8 496 6 491 492 453 51.0 1e-127 MDNKKDLDKSFFGQPRGLATLFYTVMWERFSYYGMRAILIFYMYYALEKGGLGMSQTLAA SIMSIYGSLVYISTIAGGWLADRVWGPRRTTFIGGVLIMLGHICLSMPFGAAALYLSIAF IVMGSGLLNPASSAMVGDLYEENDNRRDAGFSLFVFGINLGAVIAPIAVPWAASGFGLHL FGDETNFHAGFSLAAIGMFFGLVQYWFDGKKYLNEKDFKPNDPLNESEKQKLIKQVLLGL LSLVLVLAIMFFMGSLNIDGIINLITVIAIAMPVIYFVMMLRSDKVTKVEKHRVLAYIPL FIAAAIFWGIEESGSTVLALFAADRTILHLGAWHFEAANFQVLNPLFIMILTPVFVALWN NWKKQPSAPGKFSGALIFAGLSYVWMAIPAFISPDHRVSPLWLVGSWFLVEIGEMLNSPI GLSVTTKLAPKAFKSQMMSLWYMADSVGQAVTAQTVKLYTPKTEVQYFLAVGVVSIVFGI ILMFLVKRIHSLMEGID >gi|260196027|gb|ACQN01000040.1| GENE 2 1656 - 2546 1107 296 aa, chain - ## HITS:1 COG:DRA0143 KEGG:ns NR:ns ## COG: DRA0143 COG1250 # Protein_GI_number: 15807812 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Deinococcus radiodurans # 3 290 55 346 347 249 46.0 4e-66 MFKNITIAGAGTLGSQIAFQTALCDFNVRIWNPHPERAKRRLAALRPFYKKDMGLTDEQF DKAMANILSITNDWEIPFKDCDYLIESVPESLNVKADFYHNVCPHLPEKTIIASNSSTMV PSQLVNYVDRPDKFLHMHFANHIWTNNTAEIVGTDRTKPEVIEDVIEFAKAIKMLPIHMK KEQHGYIMNALSVPFLNAALELWANGVADPITINKDWMNSTGCPFGPFMSMDMVGIRTVY AIFAQQARTPEELKVAKTMKDMIDAGHYGIEAGEGFYKYPNPAFERADFLTSIEAR >gi|260196027|gb|ACQN01000040.1| GENE 3 2556 - 3383 1074 275 aa, chain - ## HITS:1 COG:no KEGG:LSL_0135 NR:ns ## KEGG: LSL_0135 # Name: not_defined # Def: acetoacetate decarboxylase (EC:4.1.1.4) # Organism: L.salivarius # Pathway: Synthesis and degradation of ketone bodies [PATH:lsl00072]; Propanoate metabolism [PATH:lsl00640]; Metabolic pathways [PATH:lsl01100] # 1 275 1 275 277 319 54.0 8e-86 MTSYLVNKEDLVNFLDNPNMKNQDGYMFAYVTSPEVLARLVPAPLKPVAPVIAGYITHMG NPTFAKPYDEAVLYSLVSYGGRMVGAYPFTLFLSGDGAEEAMLAGREGAAIPKKLADKIS YTEANGCTHVVVTRHGVDLINLTFTPGIPNNPDIAKQLMGSQSALDTPTDTYSFFFDYKI DQDHDGHNHFINTRLIATKTTGTTHAFTPGNITMELGTSSDDPVSELTILKPIGGAHYQM TSGKMHETIQLTQVDSNEIAPYLITGRYDQAILGK >gi|260196027|gb|ACQN01000040.1| GENE 4 3583 - 4233 730 216 aa, chain + ## HITS:1 COG:BH3859 KEGG:ns NR:ns ## COG: BH3859 COG0778 # Protein_GI_number: 15616421 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus halodurans # 4 203 3 201 212 150 39.0 2e-36 MIETEFKNDVFSNVMLKRHSVRHFDRSCKIDRSVLTEIVKEATTAPSSCNLQAWHFVVVD TDQGKEKLRKIFMPFNYPQLDTCSAMVVLFGDTDAFKKYRDLWQGMYEEKKITKERLDTI LGTFLPIYEKADRTLLTADAMVDASLAAMQFMLDARARGFATNPIAGYDATKMALAMGLD PVRYVPVMAIAIGKPDESQKELVSTRYDVGDVLEFR >gi|260196027|gb|ACQN01000040.1| GENE 5 4374 - 5042 701 222 aa, chain + ## HITS:1 COG:lin0511 KEGG:ns NR:ns ## COG: lin0511 COG0518 # Protein_GI_number: 16799586 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Listeria innocua # 1 220 1 220 226 166 37.0 4e-41 MRVNILQHTPNEGPGAIADWCRDRGYEMYVYHPYQFGKLPEASETDMLVILGGPMSPNDD LVWIKEERVLITKLLASDTPMLGACYGAQQIAKVLGSKIGKAPHKEVGWAPVYLQNHVIA GLPEKMLAMHWHEEMFEVPRGAHLLYSSDLVKNQGFVFGSHVIGLQFHFEPLADNVREMV VNDGEYALHNNALKQSPEQILQRQVPSENKQIMYKLLDFITK >gi|260196027|gb|ACQN01000040.1| GENE 6 5117 - 6097 1017 326 aa, chain + ## HITS:1 COG:L109882 KEGG:ns NR:ns ## COG: L109882 COG0673 # Protein_GI_number: 15673643 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Lactococcus lactis # 1 326 1 324 326 229 40.0 5e-60 MLKLGIIGTSWISKQLVEAAQATKKWTVTSVYSRSLERAKEFGEPLVIDEFFDDLEDFFA NGDFEVVYIASPNSLHFKQAKMAIEHDKNVIVEKPAFTNPKQYDEIAKLLDTHDCHFIEA ARHIHTKIFQKLMNEVEKLPKVDGAYLNVRQYSSRMHTLAPGQKRANIFKPEFAGGALMD IGVYGVYVAIALFGMPNSCMYSPVLYKNEIDLSGIAILDYHGFGVTIDIAKNTTTYQGSE IYGDKEVVGIDSILNMHKVDYYDADGKKHASRIKVPDNPLYEEMNEFADLFADSDEKLFD YWVLSAQVGEVLYNLRQMAGIKFLGD >gi|260196027|gb|ACQN01000040.1| GENE 7 6219 - 10406 4659 1395 aa, chain + ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 1394 3 1334 1334 508 31.0 1e-143 MKEIKDYIIGLDIGTNSCGYVVTDKQNNILKLKGKTAIGARLFKEGQAAADRRSFRTTRR RLARRHWRLGLLEEIFDPEMEKIDPNFFRRLKESDYSPKDSRKQFNAIVFKSIKADKRFY KKYPTIYHLRNALMHDNQKHDLREIFMAVHHIVKYRGNFLREDSVNAFKAAKFSLRGEDG IGPVDKLNDLLKEIYSEYSPELATNNLSKIEDIIKDKNLYKQDKLKQVATLLIKEADSKD KAKLNKDIAKQVANSFMGYMFRLDTLFSLTDVDVKDYKLKFSDANIDESLDDLTSLLTDA QIEFVLELQSIYNTIVLNEIVPDGMSLSESMIKKYDDHKEDLKIFKEYIDSLSDQKKAKK LLSAYNLYVNYRKSDLVEAKNLFKNKKVGDKNFADVISNFEVFGKFVSDNLDDSELANKI KARLDLGEFLPKQRTNQNGVIPYQLHQVELTQILEKQGKYYPFLITPNPVESHRNNAPYE ISELVSFRVPYYVGPLIDNQSIKDKQNKNKFAWMVRQKQGQITPWNLEEMVDTTESANQF IKRMTRKDTYLLAEDVLPKSSLVYQKFMILDELNRIKIDGKKLTSELKHDIFEKLFKKQK SINLDNLKNYLLVEGNIPGLIEGLSDGINFNNSFSTYIDYRNIFGDEIDNPNKQADFEKM IEWSTVFEDRKIFKRKLKEITWLTSEQIKQVSSKRYSGWGRLSKKLLTQITDENGVNILQ RLWNEPETLTEVLANPVIKRKIVEANSSFTKAKDMKDILVEAYTSPQNKKAIRQVMRVVD DIIAAAHGKKPSQIAIEFAREDQDNPQMTKSRKAQLDQIYAKISDEFLDDAVKNELKNMK DNKPLAKDKVFLYFKQMGRDAYSGEKLSLDNLQDYDIDHIYPQSFIKDDSFDNRVLVQRA YNNGKSDNVPVLLFGNKIAAGLGITIRQMWKKWLELGLISKRKFNNLITDPEKISRNMAS GFVNRQLVETSQVIKLVANILQAKLPDTEIIEVKASYNSILRKEFNLYKSREVNDYHHAI DAYLTTIVGNYLYQVYPKLRPYFVYGQFKKFGKAENQEDDPVKKIKKFNFIYQLIWGKDD AICISHTNQQVFSKKDIIDKLTTAYNFKYMNISHAVYTRNNNMFKQTLFPIIERTTAKTK SLIPKKLDRPTDIYGGYSNNNDAYLALVKVDKKRGSEYRVVGIPMRAAAMLKASKNYDED LRKVIEPMVMFDKNGKAKRGIEGFRVLVGKMPFKQAVLDGNKKFMLTGTVDTPNLKQLVL SQQNMKYILDYIEDVDCRKHKFGDKVQNPDKCLLEVFDEIIEIVDKYFELFDSRDFREKL RNSRNKFIKLEASKKADTILAILKGLQAKSTRATIKELNISDFGRIITSSISPEAQLIYQ SPTGLFERRVKVKDL >gi|260196027|gb|ACQN01000040.1| GENE 8 10637 - 11545 662 302 aa, chain + ## HITS:1 COG:SPy1047 KEGG:ns NR:ns ## COG: SPy1047 COG1518 # Protein_GI_number: 15675042 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 3 279 4 280 289 172 36.0 6e-43 MSWRNVIITQHAKLSYSANMMQVQTSNGITQIPLSDIALVLVESTQVVITSQLISKLAER GCKVIFVDNKYNPITETVNYYAPKCNYQKLLAQLNWDNSLKEKLWTKIVWLKMNNQLRVL KNYKLEFTKVEEEINKLEFNDVSNREAVVAREYFQELFGKSFVRQDEGDTINAALNYGYS ILLSSFNRRIVQNGYETYLGVHHSSIANQFNLASDLMEPFRPFVDYWVAGQKLKDFTPDV RYGLVELLSLQIKYNGKAILLANAIDLFTKECLGYLSSDVDKVESVMDFVNEVPNHAIVD NV >gi|260196027|gb|ACQN01000040.1| GENE 9 11523 - 11828 255 101 aa, chain + ## HITS:1 COG:SPy1048 KEGG:ns NR:ns ## COG: SPy1048 COG3512 # Protein_GI_number: 15675043 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 101 6 106 113 82 41.0 2e-16 MRLLIMFDLPTETAQDRKNYRIFRKELINEGFVMIQFSVYVRVCVNRKMANFLENRIRNF LPEEGLVQSLMLTEKQYNDMHFLIGTAVDDVRNTSDRTVII >gi|260196027|gb|ACQN01000040.1| GENE 10 11825 - 12493 612 222 aa, chain + ## HITS:1 COG:no KEGG:LSL_0100 NR:ns ## KEGG: LSL_0100 # Name: not_defined # Def: CRISPR-associated Csn2 family protein # Organism: L.salivarius # Pathway: not_defined # 1 222 1 223 223 129 31.0 5e-29 MIISYEGHHPIKVSDGKVTFIKVANSAVYRDFILSFQGKSDKVKFFDEHYNQLEKNKFID WVGDVLITQDCLNSYLTKIISNLFENISEKHRNRIFDKWRQLSTDIQDIIFMTDLPIEVN ENVDLKKLFKFDGIHFDDSVLSDPYAIIETVVKIHIECKLNSVVTFANVSHYLTKEQLNN LITFVKEVNVPLILMEFSSPNFKVVSGDSRVCYIDEDFVDWY >gi|260196027|gb|ACQN01000040.1| GENE 11 15274 - 17658 2722 794 aa, chain + ## HITS:1 COG:PAE2423 KEGG:ns NR:ns ## COG: PAE2423 COG0574 # Protein_GI_number: 18313335 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Pyrobaculum aerophilum # 9 777 4 778 811 728 49.0 0 MDQRKNANVLWFDELKREDVDLVGGKSSSLGELTSGTNVPVPYGFATTASAYRYFMKVTG LNEKIDALLKTLKNVDDSDELHKICSQIRKLIVAAKMPVDLAKEIGDNYDKLAMKMKVNE PFVAVRSSATAEDLPDASFAGQQDTYLNVHGRDNVIQKVKECYASTFTDRATYYRVKQGF PHEKVALSAAVQMMAFSKASGVMFTVNVATGDDSKVMIEGSWGLGEYIVQGTVTPDNFVV DKASGKISDKTINNKNVELIRLRDGGVEDRKVPEDIATKPCLTDEQVEQLASYAKEIEKH YGCYMDMEWSLDEDDKLWLVQARPETVWSQRKKAGKMSKDTSDENLTTDHKVLVSGLPAS PGIKHGIVHVIENPEDIDKFKDGEVLVTLMTSPDWVPAMKKASAIVTNNGGMTCHAAIVS REMQIPCIVGTASRGAKATAVLKDGQEVTVDAKNGVVYQGVVADMVKKPKQGVATPVAEY FAPTATGVMMNLGDPDLVDRYKDLPCDGIGLMREEFLWTTYIHQHPLYLIETGHPERVVN ELANGISKVARAMNPKPVVLRFSDFKSGEYRNLKGGDKFEPHESADLLGWRGASRYYDPK YIEAFKLELEAVKKVRNEYGLTNLNVMIPFVRTVDELKKVIEIMAEAGLKRSNDFKIYMM AEIPSNIILADQFNQYIDGYSIGSNDLTMLLLGCDRNNDTVSSLFDERNLAIKRAIRHLI KTAHKDGKTVSICGQAPSEYPEFTEFLVKSGIDYVSVNPDMVKATKRNVARYEQRIILDH ATGLGRADVEDYEW >gi|260196027|gb|ACQN01000040.1| GENE 12 17751 - 18161 308 136 aa, chain + ## HITS:1 COG:SP1549 KEGG:ns NR:ns ## COG: SP1549 COG0242 # Protein_GI_number: 15901392 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 136 1 136 136 168 56.0 2e-42 MIKEIIKDEMFLKRKSLPATKADLSIGRDLRDTLQANKERCVGMAANMIGYSKRVIIVNI GFFDVVMFNPVILERKNPYQVSEGCLSLSGSRNTLRFKEVKVAFFDEKWEKQELTLTGFA AEICQHEMDHLEGILI >gi|260196027|gb|ACQN01000040.1| GENE 13 18243 - 19928 643 561 aa, chain + ## HITS:1 COG:no KEGG:LAR_0278 NR:ns ## KEGG: LAR_0278 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 6 546 9 558 589 319 34.0 2e-85 MNKERIKVIIPYFIILVASLGTLLPQIAFHATILGSDTVFHWSRFYDIKMQLANGSFNWF QMNYTFQQTGQIVNAFYGPLFAWLNGVLLFITNNWFQYQIVSGLILLLISGIGIYRMCLK VNCPSYLGVILAILYNNVGMIPVWLIGSNFSAWGAALMPYLCIQIVNLLEEKKNPYHWQV VTLIFAIVANIHLLSFILLALAFCPFLFLSFIRTTNKGLFILGLVKSALWGIGLTGTIWG CFLLVYRTNKISSPGTFDLAGATIHLSPKGVALKDFLIAVAILFLLQILLAIITFKLNIN NFYITFVGTLFLLLATNWLINWSTVQKIFPGLGSSFQFPFRFTIVFYALFMLGLAYSSQL LFKNTKYGKWIYTISIALVTIFAYQETFSWVQRTSSQTNSVMIYSPKSKVFNEQQVEAFG NKPGQLFRYYLNIKPDYLPVTNKKLNPNDVRDLYEKFIKDDYIKYQHRVLKNGSLELKWN SSKKEKITLPLIMYQQSELIVNGKRLTHLQKTEIGNPVVQSKIGVNNAILSFRVPLWFNL LIVVNFASWILFIATFCFKRK >gi|260196027|gb|ACQN01000040.1| GENE 14 19968 - 20612 711 214 aa, chain - ## HITS:1 COG:no KEGG:LGG_01093 NR:ns ## KEGG: LGG_01093 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 3 214 11 233 233 110 36.0 2e-23 MKKEENKKKPIYKRIWFWLVVLILVGAASSTFGKNTSNSTSSSNASSSSKSSSNGNLVSL TNFNKINLSSSNGDSKETIRKLFGKKEASTSSSTVENIKTELLTWDSVDNGSFASNITIN FDNDHAVVKSISGLKVNRSKKLSLSDFEAISDGQSQDDVKKKLGEPNGYTITDLAGYKSE VWEYTSGIKGSVGANFNITFTDGKVSGKSQYEMK >gi|260196027|gb|ACQN01000040.1| GENE 15 20928 - 21773 343 281 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 [Vibrio cholerae MZO-2] # 1 253 221 465 490 136 36 2e-31 MIEISDKVVRSTIFKRPSNSYKGMYGRVLLIGGNLNFGGAIIMSAEATVNSGAGLTSVAT DINNLCSLHSRIPEVMFIDWRDTKLVEAIENSDVIAIGPGLGLDAQAKLLLKLVKNTVKS TQTVILDASALDWLAEDYTLLPVNAKKIVLTPHQKEWERVSQIKIPFQEDGDNFAVLKSL FPDNNGILVLKSNHTKIYDCFGKVYQNPLGNPGMATGGMGDTLTGILAGFCGQFSAKIET VASAVYLHSLAGDELFKKRYVVLPTQLSAKIPQLMKQFSLE >gi|260196027|gb|ACQN01000040.1| GENE 16 21785 - 23053 1076 422 aa, chain + ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 15 414 9 418 443 239 38.0 1e-62 MKRFFKAIICLLSFLLVSSLALTAGTVSASTSINNINADEVNLDVKAAITIDKKTGEVLY AKNAAQALPIASMSKLITIYLTLQAIKDGKLSWNQKLTPTKNIVKLSNNSDYSNVPLQEK HQYTVKQLYEASLIESANGAVMMLAQAVYGSQENAVNQMRTLLKKWNITDAQIYTTCGLK NGEVGSDAYPGAGKNVENEIPAVGVAKIVDHLLTDYPEILNTSKLAELDFKDGSTVTKMQ NWNWMLKGLSQYDSAYPLDGLKTGTSEKAGACFAGTLKYKGRRLITIVMGAKHADGTDPS RFTQTKKMLDYVYNNYQLYIYKKGTQLTNLKGIKVNDGNQKIANLVVKKDTGIWQKTSST GKLAFSKSAIEAPIKKGQLAGYYLFTNNPSIYSSKGTKLAATVRENIDQANIFVRIWHFF FK >gi|260196027|gb|ACQN01000040.1| GENE 17 23129 - 25225 1936 698 aa, chain + ## HITS:1 COG:lin0018_2 KEGG:ns NR:ns ## COG: lin0018_2 COG4990 # Protein_GI_number: 16799097 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 539 698 4 164 164 140 46.0 7e-33 MKKFGISSAFLLALTPLFFSAQSVKAAESSENIESAKINESVKVQPIREVIKIKYNGLGG VAVWKSYSYASGLTGSYLGNNTRWQAFAIATNTDGTKWYNLGGNQWVKSDYVISDSNLGT VKSETNQPVTSLKPENAKIENQTGVVKIKYDGLGGVAVWKSYDTNQGLTGQYLPKDSSWQ YFKVATTNNGTKWYNLGGNQWVKSDYAIEKSHSNVDVIEKSTQQQPVVIPQTLKNQTGVV KIKYDGLGGVAVWKSYNTSQGLTGHYLPKDSSWQYFKIAVMKDGTKWYNLGGNQWVKSDY VVDKSQPNGETTKKQEAGQSTVAPANLENRNGVIRINYNGLGGVAVWKSYDTNQGITGHY LSKGSSWQYFKVATMKDGTKWYNLGGNQWVKSDYAIDLSVPKKENVTPVQKSNDGMNVQD QTGVLSINYSGLGGVAVWKNYDTMQGLTGSYLRNGSSWQYFKVAVAANGAKWYNLGGNQW VMGQYVSLKYENPTGLNGNIVKDGNRYIFKNNTGEVLTGTIINGKQTFITDPYGGIYYVQ NDAPVISQLPELPTGCEMTAVTMMLQYAGANVSKLQVANETPRSSNGNYGFVGSPYSSTG WWVFPTGIAPVVNKHLGTSQVMTGASIDAIKDKLIHGHLVVVWVANMNGFINHALTLTGY NNNGTLYYNNPWTGKKESMSVNEFMGKWTLDQKRALSY >gi|260196027|gb|ACQN01000040.1| GENE 18 25485 - 27161 2147 558 aa, chain + ## HITS:1 COG:L0344 KEGG:ns NR:ns ## COG: L0344 COG0018 # Protein_GI_number: 15674020 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Lactococcus lactis # 1 558 1 564 564 633 57.0 0 MDFKQKVVELISSQVELPKEKINSLIERPKNPEMGDYAFPAFILAKTLHKNPAEIAKAIV ANLSDDNFEKIQAVGPYVNFSIKKSALISQTLEEVLVKKNNYGNQNLGSGNVAIDMSSPN IAKPMSMGHLRSTVIGNSIAKILTKVGYTPIKINHLGDYGTQFGKLITAYKLWGNEEDVK KDPINSLFHYYVKFHEVAEEKPELEDEGRAWFKKLEGGDSEAVKLWNWFRKVSLQEFNRI YKKLNVEFDSYHGEAFYNDKMDAIVDELRQKDLLVESRGAQVVDLGPDKNPAMILKSDGT SIYTTRDLTAAEYRKKHYDFVQALYVVGNEQSAYFEQLKEVLKKMGHEWADDIHHIPFGL ITQGGKKLSTRKGNVVFLDKVLEDAVELAMKQIETKNPSLPNKEQVANEVGIGAVVFHDL KNDRLDAFDFNLEEVVRFEGETGPYVQYTNARAQSILRKANQIVTIDELDLSDEWAFAVA KDLADFPAVLAKASEKYEPSIIAKFALKLAKHFNKYYANVRILDEDDQLAARLALVKATS IVLTESLHLLGVAAPKEM >gi|260196027|gb|ACQN01000040.1| GENE 19 27231 - 28142 1196 303 aa, chain + ## HITS:1 COG:SPy1889 KEGG:ns NR:ns ## COG: SPy1889 COG0191 # Protein_GI_number: 15675705 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pyogenes M1 GAS # 6 283 5 289 293 307 53.0 1e-83 MAYFDNGNEIFKEARKHHYAVGAYNTNNLEWTRAELRAAEETRTPLLIQVSTGAAKYMGG YKFVKDMVADQMDAMNISVPVILNLDHGDFESAKECIKLGYSSVMFDGHALPTEENLAKT KEIVKLAHERGISVEAEIGKIGENQGGGELASVEDAKAFVAAGVDKLACGIGNIHGVYPA DWKGLNFDRLKEIAEAVPDTPLVLHGGSGIPQDQIEKAIQLGIAKININTEFQLAFQEAT RDYIMSEKDLDKDHKGYDPRKLLLPGTEAITAKMKEMISWMGTKTIDDELKDASFDRSSL NEE >gi|260196027|gb|ACQN01000040.1| GENE 20 28170 - 29033 1277 287 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 1 287 1 287 287 496 83 1e-140 MSTYRFTNKYPNNEPVSVNDLLRQLLIPRKWRHFLRIEKKILINGNYRNFNELVFPNDEY SIMLTHVENQQHSITPSGHLPTIIYEDKNILVINKPSNQKTHPNLFETDTAMNDVTTYLG YTPYIIHRLDMLTNGLLLFAKNPAVVPILNRQLTTKIMKRNYYATVKLKNIPNQGTIDLP IAQDPNDQRKRIVDDNGLKAITHYQVIARNSIQNTMTLKLTLETGRTHQIRVHLASINLP IIGDPLYNPDFNGEALALTAYELSLISPFTFDTLKVTLPNKKDYPNG >gi|260196027|gb|ACQN01000040.1| GENE 21 29118 - 31175 2330 685 aa, chain + ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 32 685 48 700 714 572 48.0 1e-163 MREYSRNKKANPVWLFIKNFNHRFQVIRWLILVFLTVILITSSYYTIKVKTSNIANLKAS LATTTQIYDASGQKAGNLYSQKGTFVELDKISPYMQNAVISTEDRTFYTNPGFSIKGMAR AFVSLLIHHGNIAGGGSTLTQQLAKNAILTQQQTFSRKLEELFFAIEINHVYSKKDILTM YLNNAYFGNGVWGVQDASHKYFGKDASDLTVGEAATLAGMLRNPSYYNPIDHMSNALSRR NVVLSLMVQNKKLSATSAKTAQSEGLSLKDNYIQDDGYKYPYFFDAVVDEAISKYGLTEE DVMNKGLKIYTTLNTDYQSAMQDSFDSSANFPSSASDGTKVQGASVAIDPKTEAVKAIVG GRGDHVFRGYNRATQMRRQPGSSIKPLAVYTPALQSGYHYDSELSDKLQTFGANKYEPHN VDNQYSTSIPMYQAIAQSKNVAAVWLLDKIGVSKGVQAMQNFGIKVAKKDQNLALALGGL STGVSPLQMARAYSAFANKGNLPNNAYFITKIEDASGNVIAQNSNIGNHRIMSQSVAKEM TSMLLGVFTSGTAQSAQPAGYEVAGKTGSTEVSWAYGTKDQWIVGYTPDVVVATWVGFDK TDQNHYMQGISETGITRLYKAEMEGILPYTKGTAFSEKPAQSMANATGSNSDWLSQAGQN LQNGLNQAGKNIQEWYNNIKGLFGR >gi|260196027|gb|ACQN01000040.1| GENE 22 31187 - 31549 588 120 aa, chain + ## HITS:1 COG:lin2326 KEGG:ns NR:ns ## COG: lin2326 COG3679 # Protein_GI_number: 16801390 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 2 111 3 112 117 57 32.0 8e-09 MINIYDTANKLASEFQETDQFTNLKKAIAGVKENETSLAIYREMEEFQKGILEKQQNGQE MTDEEKARYQELNQKIQNDPHVKQVIMAEQGIYMLLDDIQKTIAKPITDLYEDISIHSGK >gi|260196027|gb|ACQN01000040.1| GENE 23 31552 - 32775 949 407 aa, chain + ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 285 4 274 411 187 37.0 3e-47 MKFIHLADAHLDSPFRGLSFLPYKTYEEIKSAAEKSFQRICDLALAQEVDLVLIAGDTFD SNKPSPKSQLFFAEQVKRLTDAEIEVVMIFGNHDYMDLNSLFVNASPYFHLLGNGQKVEK ISLKTKQGFEYNVVGFSYQNNHITENMVSKFPVKDSNYTIGLMHAGVKTTEAYQNVYAPF EVAELRNLDYDYFALGHIHARQVLSQKPLIIYPGNIQGRHINELSEKGCYLAIVDEERKE TKISFEKTAPILWKKLELTLTEQLSKAELQNWLISELNKANKELTFFYVVINKAQFLSEA QIELITDSDFWNNLSQNLAFSSQVIDLRLKSNLQIKLGAKEQKAFSEAKLESTNKEAFLK LAQDLIKKDQYLAKLCQREDFQQETVERALVILAQSMKGIDDETNEN >gi|260196027|gb|ACQN01000040.1| GENE 24 32756 - 35170 1946 804 aa, chain + ## HITS:1 COG:MA2362 KEGG:ns NR:ns ## COG: MA2362 COG4717 # Protein_GI_number: 20091195 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 496 786 981 1276 1300 94 26.0 1e-18 MKLTKIKIIHFGKLSNLTFSLPSKEINVFFGQNEAGKSTTVAFIKQILFGFYLRSSKSPF FEEYEPLAAVSPMGGSLFFELDGSEFELERLWAKGDKSKKGTLTVKKDGHIVPESLFFDQ IQNIDGSFYADSFIFNQDTLAQIMKLTENDLVEQIYYLGAAKSTEFLNLRDKFDKEAGTL FKKLGKKPEVNQLLAKRIDELDDLSQKQAEFANYKVLENDLNKQRSEYIKSQNEYKTNNE KLIAAKELEQKLVSYKKYQVLKNSLTEVKFSEADFNSCQNLVVEKKNLLANLEEDNSQLK NLQADDFDQEQAEKLLLERNSFVDWQNQLEYKKYELDKRKKQREQLISLYPFLRNLEEVD INQLQISAKKISSPTNTTKSKIMPWIVGLAVVGTISLIINPILALFLFILTGYLGFKESK RKAVAKQREARLASFVKEYGFNPNNQELNLVIEKLNKLKEIELDISNFTIDVEKLQSKLQ NYIVNLGKYLKRPLALEEVNEALNSLELTVRQRSILAANKASLVTNIETLKKKIETISKQ INDLLLKAEVKSWDEYLKLREAYFANKEQENRLNALSENFKDSHEKLHEIMLDEEKWQQK KDALKKQNHQLELYLAKLNQNAAEIKVKMENFANSDEIERQKQELETTNTQLNTATSKYL AYILASRIITRALDIASGERLPKMLVASQEYFTLLTNGNYQAINFGKTIKVTNRTGKKIE IKYLSRATKEQLYFALKLAFAKQIQDDINLPILIDDSFVNFDHGRTENIIKLLEQLAQES QIIIFTARKSLANALTKHVLTFEG >gi|260196027|gb|ACQN01000040.1| GENE 25 35180 - 36154 1039 324 aa, chain + ## HITS:1 COG:SP1980 KEGG:ns NR:ns ## COG: SP1980 COG3481 # Protein_GI_number: 15901803 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 12 318 5 308 308 273 46.0 3e-73 MLKNLMDYNLGEEFDQVLLIKHAQLFHTKKGTTYLMLELADKSGSMRANLGDADEEDLAK YPTGDLVAVNGVIDEYQNRPQIKIFSIRPINNDNGYDLSSFVKKAPEASASMKEEINDYV FKILNPTWNRIVRYLLEKWSNKFYAFPAAKSNHHATQAGLAYHTLSMLRDAEAISKNYPQ VNQSLLFAGCILHDLGKVIEFTGPVATRYTTAGNLLGHLVIGDEEIVLAANELKIDKESE DVVLLRHMVISHHGLPEYGAAKRPALLEAELLHRIDDLDASIYEITKALQETKPGEFTNP IFAQSGRKFYRPKNSDLDKIDKLN >gi|260196027|gb|ACQN01000040.1| GENE 26 36211 - 37119 1214 302 aa, chain - ## HITS:1 COG:lin2322 KEGG:ns NR:ns ## COG: lin2322 COG0760 # Protein_GI_number: 16801386 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 19 299 16 290 291 138 35.0 1e-32 MNKYWKKAAAIVAVAGIALSATACSSSATLVSYKGGKITQDEYYKELKSSQAGKSTLANM IIYRALKQQYGKKVSQKQVDKEYNAYKKQYGSSFESALEQNGYTTSSFKKNIETNLLTVA ALKDIKKITSKQEQKAWKSYQPKVTVQHILVSKKSTAEDIIKQLKSGTSFATLAKKYSTD SATKDKGGKLAAFDSTDTTLDSDFKTAAFKLKTGEYTTTPVKTQSGYEIIKMIKHPSKGK FSDHKKEIDEQIYQSMEQDTATMQSVIRTVLKKSDISIKDKDLSNVLSSYMSTTTSSTTS SN >gi|260196027|gb|ACQN01000040.1| GENE 27 37316 - 37669 479 117 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852156|ref|ZP_05557542.1| ## NR: gi|256852156|ref|ZP_05557542.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 117 1 117 117 190 100.0 2e-47 MFKSFGLGFILGAGVGLVAAFLPTDDEKRCLKDDVKDYVDGTVNDSTTFSNNLTTFQDNL NNFSQQTPIATETLSSLQNRTEKFQNIVNKKTDELKDKISNLNEKLISLNADLKERN >gi|260196027|gb|ACQN01000040.1| GENE 28 37701 - 38132 435 143 aa, chain - ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 6 139 2 135 140 144 52.0 4e-35 MSHLDDNCLFCKIIKGEIPSYKVFENDDVYAFLDISQVNPGHTLMVPKKHIVNLFDYSQE DAAKYLQYIPMIANAIKKIDPKISGMNIAANNGASADQVVMHSHIHFIPRFEGDGFKMAT RNNADQYTPEKYEEIANEIRKEF >gi|260196027|gb|ACQN01000040.1| GENE 29 38217 - 38960 244 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 3 220 12 230 312 98 27 5e-20 MTLKIKNLSGGYHGVAVIKNLNLEIKPGEAVGLIGLNGAGKSTTIKHILGLLRPQKGLIS LNGLELTKNPDKFKQQLAYIPEVPVLYPELTLKEHIDLTILAYELNPEKAWKKANELLKI FRLDNKLDWLPIHFSKGMKQKVMLITAFMTDAELLVIDEPFTGLDPLSALSLTKLINKAI QDGRMVLMTSHVLSEVQTTISKFAVLNNGCVEASGSLDEIKHHYGLSSSDSFDKIYEILS REQVQNG >gi|260196027|gb|ACQN01000040.1| GENE 30 38953 - 40137 874 394 aa, chain + ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 4 392 10 404 407 118 29.0 3e-26 MVELAKKRLEENIKKNLRYLRLVFNDFFVLALIFLFGGFMYWYAQNLPKIPANLWFYKPL LAIVFTISLVPGELVTLLRKADLQFLFVKDSEMAAYLKKLKGYSLVLPFIILTLVIGIAF PFAGIKLGIQLGGYSIIAILLYLLKAVYLQLEYLSLSFQYHYSKVLFYLIAFLGIYASLF DFSASAALLIALIGFAIYIFKQKLDSFDWSKAYEKERIRQNRVFIFYSMFTDVAEKAVVI KRRKYLDFLLNFQKTKSANQFLLQRNLLRNPDYISLLVRMTAFAVLLSLVITDTNMLLIL SALVTFLTAYQLLPIKNLYQRHIMYHVMPIKKDNTREVKSVITWALLLQVIVIAIVWIII FKIKVIALLNAAILLLFMLMITNLYLPIKLKKKR >gi|260196027|gb|ACQN01000040.1| GENE 31 40146 - 40799 818 217 aa, chain + ## HITS:1 COG:L156302 KEGG:ns NR:ns ## COG: L156302 COG0220 # Protein_GI_number: 15672731 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Lactococcus lactis # 1 216 1 213 217 206 47.0 3e-53 MRLRNKPWAVKLVDEHPESVLQDPNPEIRIEWEKRFEDFSRPLEVEIGSGKGQFITTLAQ KHPDRNYVAIELQTTAAGIILRTKLEKKLDNLQILRGDAISIASFFAENSVDVLYLNFSD PWPKTRHEKRRLTYKDFLKNYETILKPTGHLEFKTDNSGLFSYSLMSLNNYGMTFDFVSV DLHHESEEIVAKNVETEYEHKFASKGNPIYALHAHFN >gi|260196027|gb|ACQN01000040.1| GENE 32 40861 - 41181 425 106 aa, chain + ## HITS:1 COG:lin1650 KEGG:ns NR:ns ## COG: lin1650 COG0526 # Protein_GI_number: 16800718 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 10 105 8 103 103 105 45.0 2e-23 MEKIDALTKEKLAELTRNGRTVLEFSADWCPDCRFLDPIMPEIEKDFADSKFFQINRDNS VEVAKDLSILGIPSFVVYQDGQEIGRLVNKDRKTKDQVESFLRSLD >gi|260196027|gb|ACQN01000040.1| GENE 33 41200 - 41847 814 215 aa, chain + ## HITS:1 COG:L195751 KEGG:ns NR:ns ## COG: L195751 COG0073 # Protein_GI_number: 15672372 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Lactococcus lactis # 1 200 1 201 208 167 44.0 1e-41 MIASTNKHAYPNTLIVILGQDKGRSHYEEKGQVTRVLDEDNKVIGFNFFNVDQYLNYDAL NNGEVELTAEDLAKLNQVLTDNGFSDQLKPSKPTLVYGYVKTCEAHPDSDHLHVTTVDVG LDDDVKIVCGAPNIEAGQKVVVALPGTLMPNGAQIWPGELRGVPSYGMICSARELGLAHA PQKRGIMVVPDNFEVGQKFEPTKCDELLASGAITL >gi|260196027|gb|ACQN01000040.1| GENE 34 42037 - 42564 230 175 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1300 NR:ns ## KEGG: LGAS_1300 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 3 169 5 171 189 65 23.0 8e-10 MNLKQLEEVLYKYLSTERVKNFQVKTLCEVARVSRGSFYYHFKGIEDFSESIFIKDLNRI LLSNQYDNFSSRMLQLLKVLKDNQIFYTNLVYLGADKAFGKNVEVALFEILRYYARGRGC YSEPTLVRISKAMYHTIYYWIMHNCEDQIHQIHTCLFLQFQELDRQKELHDTIGM Prediction of potential genes in microbial genomes Time: Wed May 25 14:13:55 2011 Seq name: gi|260196026|gb|ACQN01000041.1| Lactobacillus jensenii 115-3-CHN cont1.41, whole genome shotgun sequence Length of sequence - 52791 bp Number of predicted genes - 50, with homology - 50 Number of transcription units - 26, operones - 12 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 144 - 175 1.8 1 1 Tu 1 . - CDS 186 - 1493 1636 ## COG0172 Seryl-tRNA synthetase - Prom 1593 - 1652 3.4 - Term 1578 - 1618 -0.9 2 2 Op 1 . - CDS 1734 - 2264 352 ## PROTEIN SUPPORTED gi|116630184|ref|YP_815356.1| acetyltransferase 3 2 Op 2 . - CDS 2261 - 2866 441 ## COG0398 Uncharacterized conserved protein - Prom 2950 - 3009 6.2 + Prom 2926 - 2985 11.0 4 3 Op 1 . + CDS 3066 - 3860 830 ## COG0657 Esterase/lipase 5 3 Op 2 . + CDS 3862 - 4713 860 ## Ldb1886 XRE family transcriptional regulator + Term 4718 - 4761 6.1 - Term 4703 - 4752 9.2 6 4 Tu 1 . - CDS 4754 - 5251 662 ## COG3613 Nucleoside 2-deoxyribosyltransferase - Prom 5277 - 5336 11.9 + Prom 5237 - 5296 10.6 7 5 Tu 1 . + CDS 5379 - 6761 1102 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 6768 - 6818 2.5 - Term 6764 - 6798 5.3 8 6 Tu 1 . - CDS 6803 - 7783 930 ## LBA1636 hypothetical protein - Prom 7816 - 7875 8.0 - Term 7842 - 7882 4.1 9 7 Op 1 3/0.000 - CDS 7895 - 11020 3099 ## COG2409 Predicted drug exporters of the RND superfamily 10 7 Op 2 . - CDS 11034 - 11582 491 ## COG1309 Transcriptional regulator - Prom 11606 - 11665 4.1 - Term 11660 - 11693 3.1 11 8 Tu 1 . - CDS 11694 - 12614 971 ## LBA1639 putative beta-lactamase (EC:3.5.2.6) - Prom 12717 - 12776 7.6 12 9 Tu 1 . + CDS 12769 - 13668 1027 ## COG2971 Predicted N-acetylglucosamine kinase + Term 13685 - 13722 1.5 - Term 13667 - 13716 10.1 13 10 Tu 1 . - CDS 13719 - 14642 872 ## COG0598 Mg2+ and Co2+ transporters - Prom 14665 - 14724 6.0 - Term 14668 - 14725 5.2 14 11 Op 1 2/0.000 - CDS 14756 - 16045 1521 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 16089 - 16148 7.6 - Term 16143 - 16182 7.0 15 11 Op 2 . - CDS 16198 - 17505 1566 ## COG1653 ABC-type sugar transport system, periplasmic component 16 11 Op 3 . - CDS 17557 - 18840 1397 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 17 11 Op 4 38/0.000 - CDS 18824 - 19648 883 ## COG0395 ABC-type sugar transport system, permease component 18 11 Op 5 10/0.000 - CDS 19648 - 20514 827 ## COG1175 ABC-type sugar transport systems, permease components 19 11 Op 6 . - CDS 20514 - 21599 1071 ## COG3839 ABC-type sugar transport systems, ATPase components - Prom 21714 - 21773 10.4 20 12 Op 1 . - CDS 21775 - 22650 817 ## FI9785_1579 extracellular/cell surface DNA-entry nuclease (EC:3.1.30.-) 21 12 Op 2 . - CDS 22659 - 23612 967 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 22 12 Op 3 1/0.000 - CDS 23612 - 24388 624 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 23 12 Op 4 . - CDS 24400 - 25665 1105 ## COG2195 Di- and tripeptidases - Prom 25685 - 25744 4.3 - Term 25702 - 25743 6.1 24 13 Tu 1 . - CDS 25757 - 26824 728 ## COG3410 Uncharacterized conserved protein - Prom 27021 - 27080 5.5 - Term 27034 - 27097 3.0 25 14 Op 1 . - CDS 27106 - 27489 473 ## gi|256851895|ref|ZP_05557283.1| predicted protein 26 14 Op 2 . - CDS 27511 - 28449 1153 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 27 14 Op 3 . - CDS 28465 - 28872 461 ## COG0789 Predicted transcriptional regulators 28 14 Op 4 . - CDS 28928 - 29839 754 ## COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold - Prom 29867 - 29926 5.5 - Term 29910 - 29953 7.0 29 15 Tu 1 . - CDS 29964 - 30716 1133 ## COG2461 Uncharacterized conserved protein - Prom 30791 - 30850 10.2 - Term 30858 - 30893 3.7 30 16 Tu 1 . - CDS 30910 - 31230 324 ## gi|256851890|ref|ZP_05557278.1| predicted protein - Prom 31446 - 31505 6.4 - Term 31474 - 31520 -0.7 31 17 Tu 1 . - CDS 31532 - 33112 172 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 33149 - 33208 9.2 + Prom 33003 - 33062 8.9 32 18 Tu 1 . + CDS 33265 - 34176 853 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 34191 - 34228 -0.1 - Term 34167 - 34226 11.1 33 19 Op 1 . - CDS 34235 - 34795 766 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 34823 - 34882 2.4 34 19 Op 2 . - CDS 34921 - 35835 685 ## COG1072 Panthothenate kinase 35 19 Op 3 40/0.000 - CDS 35907 - 37157 1103 ## COG0642 Signal transduction histidine kinase 36 19 Op 4 1/0.000 - CDS 37164 - 37835 588 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 37 19 Op 5 . - CDS 37832 - 38446 643 ## COG2357 Uncharacterized protein conserved in bacteria - Prom 38470 - 38529 8.7 - Term 38503 - 38531 -0.1 38 20 Tu 1 . - CDS 38539 - 40833 2070 ## COG3973 Superfamily I DNA and RNA helicases - Prom 40861 - 40920 5.6 + Prom 40846 - 40905 8.9 39 21 Op 1 . + CDS 41017 - 41691 801 ## COG5549 Predicted Zn-dependent protease 40 21 Op 2 . + CDS 41707 - 42357 823 ## COG0406 Fructose-2,6-bisphosphatase + Term 42362 - 42403 6.0 - Term 42350 - 42390 2.0 41 22 Op 1 . - CDS 42398 - 42847 561 ## COG0105 Nucleoside diphosphate kinase 42 22 Op 2 36/0.000 - CDS 42926 - 44725 1598 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 43 22 Op 3 . - CDS 44740 - 45489 284 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 45617 - 45676 6.2 + Prom 45576 - 45635 9.8 44 23 Op 1 . + CDS 45662 - 46933 567 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 + Prom 46952 - 47011 6.7 45 23 Op 2 . + CDS 47032 - 48282 1408 ## LBA1739 hypothetical protein + Term 48288 - 48334 5.1 - Term 48285 - 48314 1.4 46 24 Op 1 . - CDS 48338 - 49345 1249 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 49418 - 49477 7.0 47 24 Op 2 . - CDS 49515 - 50099 513 ## COG0194 Guanylate kinase - Prom 50125 - 50184 7.0 + Prom 50064 - 50123 9.1 48 25 Op 1 . + CDS 50158 - 50448 320 ## LGAS_1701 hypothetical protein + Term 50472 - 50504 1.7 49 25 Op 2 . + CDS 50520 - 52073 935 ## LBA1747 hypothetical protein - Term 52052 - 52080 1.3 50 26 Tu 1 . - CDS 52085 - 52711 555 ## FI9785_1632 hypothetical protein - Prom 52731 - 52790 4.9 Predicted protein(s) >gi|260196026|gb|ACQN01000041.1| GENE 1 186 - 1493 1636 435 aa, chain - ## HITS:1 COG:SP0411 KEGG:ns NR:ns ## COG: SP0411 COG0172 # Protein_GI_number: 15900330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 424 1 418 424 554 67.0 1e-157 MLDIKVIRERLDWAKEKLATRGIKPEELDEVVAIDEKRRAKLSETEALKAKRNEVSKEIA NKKRNKENADDAIKAMREVGEQIKKLDEEVAELSEKQNYILLRLPNFPDDSDPIGPDESY NQEVRKWNEPTKFNFDPKAHWDLGDDLHILDFDTAAKVSGARFVYYKGAGALLERAVYNF FLDENTKEGYTEVIPPYLVNDDSMQGTGQFPKFTEDVYTIVDNDDPDKPLNLTLIPTAEV PLVNYFRGEIVDGKKLPINVTALTPAFRSEAGSAGRDTRGLIRMHQFNKVEMVKVCKPEE SWNELDKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTYDLEVWMPAQNKYREISSCS NCTDFQARRAQIRYRDEDGKVKLVHTLNGSGLAVGRTVAAILENYQNEDGSVTVPEALVP YMHGMTKITREDTLG >gi|260196026|gb|ACQN01000041.1| GENE 2 1734 - 2264 352 176 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116630184|ref|YP_815356.1| acetyltransferase [Lactobacillus gasseri ATCC 33323] # 4 168 14 180 193 140 43 2e-32 MIGKKIYLRHFVKEDGEQLFLWSKKTVYFEKARFTQYKDLSAAKHGATLLAQRKNSFAIC SHDNDKVIGMIELYERGASENLLNTCEVGFLLDEKYWHQGLMKESLQLVCQYAFNDLGMK EIWAGVFQDNDASIHLLGKMGFEYIYQVKYPDIFSPENKNENYYLLRPGNCKFVRS >gi|260196026|gb|ACQN01000041.1| GENE 3 2261 - 2866 441 201 aa, chain - ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 9 195 10 197 201 155 43.0 4e-38 MRLSAEKSRKLINILTLVSFILIIALVIYWWKLGIFTDTEKMKAYLADKKIIGPLIFVLI QIVQVVIPIIPGGVSLLAGVIFFGPVWGFIYNYVGICIGSFVIFYLSRRYGKPFILHLVS EETLDKYIKWTKNQKKFNWFFALCIVAPAAPDDVLCMLAGLTQMKFWTYFWIIVLGKPWT IAAYSFGLLYGAKWLFGIFKK >gi|260196026|gb|ACQN01000041.1| GENE 4 3066 - 3860 830 264 aa, chain + ## HITS:1 COG:L141530 KEGG:ns NR:ns ## COG: L141530 COG0657 # Protein_GI_number: 15673289 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Lactococcus lactis # 19 260 15 257 257 81 30.0 1e-15 MVVIKQNVIYDSEHDLRTDIYFPNDTSSKTKILIFWHGGGFIRGSKDECKNFGIKFANAG FMTFIPDYRLAPRYIFPAAHQDARNFIDWLLNSSYTDSDDQKNIVQIGASAGGTLALQLA GFYVFPTVTWSAPVDFSNWMKEHETVSPSPDARSELGTSAPDEIAASFYKYFTVTYIGSN NHEVLQKLDADSYDYDNLNQLMLINSSHELVELSGVFRFIHFLADSGHEVQLLTLPGSGH AMAYANDYVDESLDFLYQAIKRNK >gi|260196026|gb|ACQN01000041.1| GENE 5 3862 - 4713 860 283 aa, chain + ## HITS:1 COG:no KEGG:Ldb1886 NR:ns ## KEGG: Ldb1886 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.delbrueckii # Pathway: not_defined # 1 283 1 282 286 281 51.0 2e-74 MLNIDKFVQIRKSLKLSQTELCSGICTQSTLSKFENNGLVPSFKILNQLCERMNISLSDL MGPSEEAGVTEQLIEADFSLVSYDYEKLARLMAKVKQSSLKKSDDKFHYQYLKGQVALYD KNEPMSALYYFNGILTAADLKANSIYRLLALNGCSEVYFSQKEFDKAKHYYDQIKNEILK FKVNSNEEAIQVLSILCTAGEFYGEQGDYKHSNKLLNAAYNLCATRHLVFFLARTCLRLG ENIVAQNGDIQKAKDNFYDAIAFGRLNDNQQVIERAQSALESL >gi|260196026|gb|ACQN01000041.1| GENE 6 4754 - 5251 662 165 aa, chain - ## HITS:1 COG:L92464 KEGG:ns NR:ns ## COG: L92464 COG3613 # Protein_GI_number: 15672475 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside 2-deoxyribosyltransferase # Organism: Lactococcus lactis # 8 161 10 156 159 66 29.0 2e-11 MTEVSTGNVYLGTPFYNDAQKNRVKLAQEYLAENPTVVRVHFPFDYEFVDPEEPNPKAGI PSLKWQLATYQNDITGLVNANVGVFLYDMDNIDDGSAFEIGYMRAMHKPVILVPFTEKNN EVKKMNLMLAQGVTTLIDGNTEFEKLKTYDFNSCMSNPVTGYRIF >gi|260196026|gb|ACQN01000041.1| GENE 7 5379 - 6761 1102 460 aa, chain + ## HITS:1 COG:SPy1067 KEGG:ns NR:ns ## COG: SPy1067 COG1012 # Protein_GI_number: 15675059 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 4 459 3 459 465 489 53.0 1e-138 MSNYQSINPYTNENFAEYSNPTAQHIEESINLANCLYKKWRHESPQKRSQILDKIADNFK DNRVQMATIITKEMGKLYVESLEEVDLCINICHYFAQHGVDMLNKVPLNTSLGNAYYLKQ ATGVIMACEPWNFPLYQIIRVFAPNFIVGNPMLLKHAHNVPGCAALAEKIIKRAGAPEGS MINLYLSYQQLADVISDNRIKGVALTGSERGGASVAMQAGKSLKKSTMELGGNDPFIVLN DADDTILKNVLQDARTYNCGQVCTSSKRIIVLEDKYDQVLNELKNIFANLKPGDPMNKST TLAPLNSESAKKKLTQQVKQACEAGANISYQYPNINEKGAFFRPIILTNINKENPIFNQE LFGPVACIYKVKDISEAIELANDSSFGLGSSIISSNVAKAQEIASQIETGMTVINGRWIT APELPFGGIKNSGYGRELSELGLNAFINEHLIIDCTKSNK >gi|260196026|gb|ACQN01000041.1| GENE 8 6803 - 7783 930 326 aa, chain - ## HITS:1 COG:no KEGG:LBA1636 NR:ns ## KEGG: LBA1636 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 325 1 344 347 170 29.0 6e-41 MKRCPSCGHLLKIDEAKCTYCGHIFSKETEQNKSEYTENTQGMSRSQLQKENSSSLIQPV SKLPLKEIFQKMLLWIHKNSTIVFITGLILMVFTSIVPELGWTCLLLLLGWLFWVCKKDI PVKQYTVDKKLTADLNKTGERVGERADRQKERIISEHPEVREKIKKVQQIKLPKNASVYR WGAIFTSLLSLFIFFSKSENTNSLSRVVLDFANNQFSSSQTIFAMLVYIGWAYIVINPFL IVYRLLKKETSYRIKAFVWALIETILLFGLVNYSSRTTAVSTFGSLTKQLISSLTAIAVN YYMLIFTSVLTTALTLMNIIKDKKNI >gi|260196026|gb|ACQN01000041.1| GENE 9 7895 - 11020 3099 1041 aa, chain - ## HITS:1 COG:CAP0102 KEGG:ns NR:ns ## COG: CAP0102 COG2409 # Protein_GI_number: 15004805 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Clostridium acetobutylicum # 1 1031 9 1030 1058 527 34.0 1e-149 MQKFIKNHVFSLIAWLLILVISIVALPNVNQLTRDHAEIKLPADTQTTIAQTFNNEWSNK TKNTYEIALVFNKKDGKLTKSNQAAIDQTISDLKENKEKYGIKNILSPNDNTATKKRLKS KDKTTWLVQLNVSKSHGTISDINKELQKAVKTKGVTTYVTGADILNDDFSASIQEGIKKT ELISIIFIFIVLVLVFRSPIVPLISLFTVGVSFLTAFSIVTNLVKSANFPFSNFTQVFMV IVLFGIGTDYNILLYDKFKENLGNGLTVGEATKDALHKAGRTILFSGSSILIGFSALALA KFSIYQSATGVAVGVAVLLLVLLTLNPFFMMSLGAKMFWPVKKFEGESESKVWTFLASNS VKRPILHIIVTFLIVTPFMALYSGHLNYDDTDEISNDTPSKAGLLVVQKHFSKGMAMPSY LYIKSNHTLDNEADLKLIDEATRQLQASKGVSLVTSVTQPYGEKVSQLYVNKQLNTVTQG VGTAQSGLTKLSNGSSQMTNGLGQLVSGSQTLTNGLNTMTSQLNSQMSTANQSQLAQLQT ALPQINQGIQELNSALRNSGASIDTTSLTNNLTDAGNNAKLIGNNLTAAGEILKQLQAST STSSADTSQILAQYRAVEDKAGLNDQQKQAMEQALMTILSGVNNKVQAQTSAATTSIEKV AANLQAAGLADQSLGNNLSNVAATLQGLSGLSSQISTLQTEVNKLATASNLALPGANQAI TKLSSGLNQVQSAVSTASNGSSQITSGAQQLYNNSPALTDGINKVNSGLGEGATYLSGLA DSAASDEFYIPKKYLKSSLFQKSINNYMSNDKKMTKIIVVLDSNPSSDKAAVKSHKLSAM VKKSLAGTDLKDAEVVMGGQSSRIQDTRQTASKDFTRTAIIMLVGIGLALIVVTRSVLQP LFILGTLLMAYFSSLTINEWFIKAVMGKDMLTWNTPFFSFIMIIALGVDYSIFLMMRYRE LDEATASERMVHASAIIGTVVISAAIILGGTFAALIPSGIPTLIEVAITVIVGLAILVIL MPILLSAAVKLTYEGFKKSKH >gi|260196026|gb|ACQN01000041.1| GENE 10 11034 - 11582 491 182 aa, chain - ## HITS:1 COG:CAP0028 KEGG:ns NR:ns ## COG: CAP0028 COG1309 # Protein_GI_number: 15004732 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 2 166 1 169 187 58 28.0 8e-09 MVKKRTLDLSKVIAATSELIDEQGLAAVTFPNLAKRLGIRSQSLYHYIDNRTQLLSLVGA NRIRALNENLKENLVGMAGQEAILKFCDLIRDYLLKDNALAAILYHLNEYERDAEINIEL LKVIELGTKLKSDKDEPISVHALVGAVLGYVFFDRSAIFSGESSNERNSNYHQMILRLIK PV >gi|260196026|gb|ACQN01000041.1| GENE 11 11694 - 12614 971 306 aa, chain - ## HITS:1 COG:no KEGG:LBA1639 NR:ns ## KEGG: LBA1639 # Name: not_defined # Def: putative beta-lactamase (EC:3.5.2.6) # Organism: L.acidophilus # Pathway: Biosynthesis of secondary metabolites [PATH:lac01110]; Two-component system [PATH:lac02020] # 1 305 1 316 318 133 32.0 8e-30 MKNRIILGAIVASVCSFALYLNNMKRYESATLTISRNQNNTQTVTEKNKQGKKQETSPVL EKITKKGNSKLASQIQKAMKNSNSYDVKVLDLKNSNNSAEVYNKKDKVNVSDSLKAFLLV GLYKEIEQQKIKAAATLTPTASEIVKGDSTFAANTVYSLTYVRQNLMSKNSNTAANLLLN KLGKEQVNNIIKEMGTRETVISNKFGESVVGTTSAEDLAILMKSLYNGKFLGNYSNTVLT GLSTYSVKSPLVNKISNANIIQIGDNTSAVALVTTDKHSYVIAVTSQNNNSFAELGLKIS TWFNQN >gi|260196026|gb|ACQN01000041.1| GENE 12 12769 - 13668 1027 299 aa, chain + ## HITS:1 COG:alr4655 KEGG:ns NR:ns ## COG: alr4655 COG2971 # Protein_GI_number: 17232147 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosamine kinase # Organism: Nostoc sp. PCC 7120 # 1 286 1 305 320 112 30.0 1e-24 MHYQIGIDAGGTHTTAIAYDLTGQELLTVETGQGNINADFDGGMANIKEAIRQIQAKLGS DCERILAGIAGISVTGQYKEVSEALASAFNTKAKAVTDSLLALYKGLKGEDGIIVIAGTG SVVNGLQNGKILTVGGYGHLLGDEGSGYAISIAGLKSALHSWDKREKNDLIDLFTKHFGV SEMNDCNQKVYRLERPEIASLARLIAELADKGSKDAQDVIFSQADLLAQDIIMGLDRFTD PKPMAIALTGSVLTNNKMLRTRVEDKVHVKYPNAKFVVSSGSNASGILFDKNDDYYTAK >gi|260196026|gb|ACQN01000041.1| GENE 13 13719 - 14642 872 307 aa, chain - ## HITS:1 COG:lin0568 KEGG:ns NR:ns ## COG: lin0568 COG0598 # Protein_GI_number: 16799643 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 5 303 4 298 301 141 31.0 2e-33 MIKEQTFPVKTIYNWYDISNLSEEDSRILQKDFNFTSDIISYISDRHERPHYDYDQYTQS HLLVYDVPIWPTPSIKHFTANPVTFLVQGNNIFTFHTELTNYVFEEFDDERMRERLSEAE DVTELLMIFLLYSSQYFQRAVTQLNIERNGLDSKLSDNINNKDLVELSNIEKGLVYLSSS IQTDLLMLHSLNKSHLNSKFTKRSLERLDDVLIESNQSAQMVRISSQVTKTLSTTSNNMM NNNLNDTMKFLTVWSILLTIPTIMTGFYGMNVSLPVFGHSLDWIMISIITVGIMAWLAYY MKRHHFF >gi|260196026|gb|ACQN01000041.1| GENE 14 14756 - 16045 1521 429 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 42 355 19 343 419 163 32.0 6e-40 MNIWKKAFLSSLVGVSLLTTACSTQKKTSAKQESNIPKVTKKTTVVFWHGMSGVQGATLK KLTDEFEKKNPNIKIKLEYQGTYINLQAKLNSTMQSPNNLPTITQSYPGWLYNAAKNKML VDLKPYIASKNVGWNGKDSDINTSLLNGAKINGVQYGIPFNKSVEALTYNEDMLKKYNVK VPKTMAELKSVAKKIYEKSHHKVVGAGFDVMSNYYLLGLKDQGINFSNKVKFDSKASKNV INYYAEGVKEGYFRTAGSEHYLSGPFANEKVAMYIGTSAGEGFVKKAINGKFKYGVAARP SKYNMQQGTDIYMFSKASAMQKAAAFKYMKFLVSKSSQLTWANATGYVPVNKQVLMDKKY INNPNMKTPAILKAAMQHLYSVPVEKNSNAAYIQAGSNLENILIAAGKKQNYSGLIKQGQ TKLENAWKQ >gi|260196026|gb|ACQN01000041.1| GENE 15 16198 - 17505 1566 435 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 47 398 19 370 419 162 31.0 1e-39 MKFAKRLAVAGMTALALVGTTACSSSKTSSTKSNATSSVKIPKVTKKTTVVFWHAMTGVQ QSTLQKLTAEFEKKNPNITIKLENQGAYTDLQAKINSTLQSPNNLPTITQAYPGWLWNAA NNKMLVDLTPYINDKTVGWGSAKSSNIKTELLEGAQIKGTQYGIPFNKSVETLTYNADIL KKYNVKVPTTMAELKAAAKKIYEKSGHKVVGAGFDSLSNYYTLGMKDEGVDFSNKINFSG TTSKKVINYYADGVKAGYFRTAGSEHYLSGPFANEKVAMYIGTSAGEGFVKKGVGTKFTY GVAARPSKYNMQQGTDIYMFSKASAMQKAAAFKYMKFLVSKSSQLTWANATGYVPVNTAA VNSSEYKDNKSMKTPAIIAKSMKNLYSVPVEKNSNAAYSQLNSIMQNILSAAAKKQSVNS QITAGKAKFDAAWKQ >gi|260196026|gb|ACQN01000041.1| GENE 16 17557 - 18840 1397 427 aa, chain - ## HITS:1 COG:PH0466 KEGG:ns NR:ns ## COG: PH0466 COG0595 # Protein_GI_number: 14590378 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Pyrococcus horikoshii # 9 424 4 511 514 102 25.0 2e-21 MTLKDKTTVTFYNGLTTIGGPMIEVAYNKSHVLFDLGEVYRPELNLPDESYQTLIKYQLI GDVPDFYDPAITGKQLNHEKWEHAAAYISHLHLDHSKALNLLAPEVPLYAGPITAALLPV LNKNGDFLLPAANHEKNYTRSIIPAKYKTPIKVGDITLEVWPSDHDAYGATGLVVKTPDK LIAFTGDIRLHGYHPEWVKEYLSAVKNADLFIVEGTGISWPEHIGQEFSGPKNEDELTER IVQLEQENPQRQITFNTYPTNVERLLRIIEESPRKVVLHAKRADLLKESLNKDYYYYYLP GEEKYKSLDPNLKISYQDLLKDNHKYLWQAVANYGDLMKNGLYIHSNAEPLGDFDPAYKP FVEALERQNIEFTALRCSGHADDKELREIIGLVQPRILCPVHTLHPELAENPYGERILPK RGQTITL >gi|260196026|gb|ACQN01000041.1| GENE 17 18824 - 19648 883 274 aa, chain - ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 56 273 60 277 277 172 39.0 8e-43 MKKIRIGNLIAYVVLAIFALITVFPFVYMILGGLMSYSETTTIPPTLIPHKFNWGNYAKV FAQAPFARYFLNTFITASVTTIVSLFNALLAAFALTSLKFKGKGLVQSLLLSLLMVPGEA IIFTNYNTIAKMGLLNTYLGLVLPFLTSIFYMYYLQSYFGSISDTIYKAAMINGASDWEY IWKVLVPMSKGGLFTVGLLSFISGWNAFLWPLLVTNEDSMRLLNNGLSSFASDSGSETEL QLAAATLTVLPILIVYFIFRKQIIRGVVRNDLKG >gi|260196026|gb|ACQN01000041.1| GENE 18 19648 - 20514 827 288 aa, chain - ## HITS:1 COG:TM0596 KEGG:ns NR:ns ## COG: TM0596 COG1175 # Protein_GI_number: 15643362 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Thermotoga maritima # 60 288 189 418 420 162 41.0 1e-39 MKTNQKKAWLFLAPTLIFVTVFSVWPILRAFTMSFPSGPLINLEWTGFSNYQYIFSDPEF WRAIKNTLIYAIFAVPVSLAISIMLAWFIFSKVKHSSFLETTFFMPYVTSTIAIGIVFRY IFNGEYGLLNYLLKAVHLPAPNWIDDPSMSLITIIIFGIWTSLAFDIVILMGALRNIDPN YYILADMYGASEREKFWRITMPQLVPTLAFLLTMNIIGAFKIYTSVYALFNGQAGIGNSA TTAVFYIYNKFQMVGTPGVAMAATVVLFLIILLTTFLQRKMMKKIGRY >gi|260196026|gb|ACQN01000041.1| GENE 19 20514 - 21599 1071 361 aa, chain - ## HITS:1 COG:mlr7224 KEGG:ns NR:ns ## COG: mlr7224 COG3839 # Protein_GI_number: 13476018 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Mesorhizobium loti # 7 356 4 376 381 264 38.0 2e-70 MNEEKFVEVKDLRKVYDNGHEAIKNVSFSVKKGDLVCLLGPSGCGKTTILNMLAGLLNPT SGEILFDGKNVVNVEPKDREIGYVFQNYALYPHMTVLQNVMFPLTVGKTKRPKEEAEKIA KKYMALTQITDLANQKPGNLSGGQQQRVAIARALVGEPKILLMDEPLSNLDARLRLKIRE EIRALVKEVGITTLFVTHDQEEALSIGDKIILFNNGVIQQDDNGQNFYLEPKNHFVANFI GNPVIDNFAVTVENDEIKTSDFTIKVSDWDKQRLRKQLVDGNYILSVRPENITPADNGEL AVQIVDVELIGRERILKFNYDGQQARSLVNLEVPIKAGDKVRLKLRLDRIFIFTPEGERI Y >gi|260196026|gb|ACQN01000041.1| GENE 20 21775 - 22650 817 291 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1579 NR:ns ## KEGG: FI9785_1579 # Name: endA # Def: extracellular/cell surface DNA-entry nuclease (EC:3.1.30.-) # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 289 1 280 282 320 68.0 4e-86 MTKRRKKRASNRKFNPITSILFVLAFAFWGIYQSSGGNLSTAVNSITSFNNSSSSSNSAK NTFTATSADTEYGGLSTSDYQKLANLDFQSGQKGYVVVNNNHSTLIKNAWKVNKVIYSNL DNLNRTSHSNTGFLEQRNVANDSLRVRQFVNPTAWHSNRSSGEQIYNRGHLIAYSVSAGI DQNGNYEPNNQSGDQNNPKNLFTQTAYSNQKVQTIFEGKVRQALRQGKKVIYQATPIFRN NELMARGINLQAVSTDGMLDFNVYIFNVQPGFQFNYQNGRASKDNSLQVAN >gi|260196026|gb|ACQN01000041.1| GENE 21 22659 - 23612 967 317 aa, chain - ## HITS:1 COG:FN0281 KEGG:ns NR:ns ## COG: FN0281 COG2176 # Protein_GI_number: 19703626 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Fusobacterium nucleatum # 33 239 425 620 1454 91 29.0 2e-18 MTVKVVSGQLEFTNQNLANKLRKKGHELVTFLDDYTMLDIETTGLSPYRDRITELAGIKV RNGKVVAEYSQLVKYPKDNKVPRFITKLNGIDEALILANGMPVKEAITEFRNFIGGDVIV GYNVNFDLNFIYDLCEKFQLKKLSNNYIDVLHFSRVFFKKESHNRLLDCIRRLGISESEA HRGLKDSLDTKAVFDIYRKQFTPEMLNEVKDSLKSCVLTEEIPFEYLIKRNPLKNKTVVF AGTVNKEELELIVSNMGGQVRDHVDSTIDYLVMGDKDFFSKSNSELQKARRLISEGIKIS RLSESFFLDMLDSWARS >gi|260196026|gb|ACQN01000041.1| GENE 22 23612 - 24388 624 258 aa, chain - ## HITS:1 COG:SA0315 KEGG:ns NR:ns ## COG: SA0315 COG0846 # Protein_GI_number: 15926028 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Staphylococcus aureus N315 # 5 253 22 289 315 96 27.0 5e-20 MSDFEKARKIINEADAILITAGNGFASLDGFDMLDEASFKIQYPDLVEKYNFKTIGDALD RRLSNWDEQWSIWRRFIDNYSINYQASSMMQNLKTLLKGKEYFIATSYYIHAFENAGFDS KKIFNIFGDWTTMACSSGINHGLKSDLQIYGVPKCEICNSEMEIHMPLTAHFYPDTDANT RLRIFITNNESKKVAVLGLGVDELSPQLLEPITHLVSQFESWHYISADLCITDLPQDVAK RSIAAESNSESLLEGLIS >gi|260196026|gb|ACQN01000041.1| GENE 23 24400 - 25665 1105 421 aa, chain - ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 8 407 9 409 412 384 48.0 1e-106 MNIDQKYIQDKFIEYCEVDTRSYFESETVPTSVGQVELLQLLKQELIELGLSQISYSPKD AYLLGKIPATTSKKVTAIGFVAHVDTADYNSKNIKVQIHKNYDGTDIRLDKSHVLSSKQF SSLKKVIGHTLLTASGDTLLGADDKTGIAGALGMAKYLLSHPEIEHGDIWLAFGPDEEIG KGAARFDVKRFPVEFAYTLDNGDIGDIAYETFNAASATVTFAGTVVHPGEAYGLMVNAGL MANEFIAALPKDFVPEKSKGYDGFYLVTDFSGNVDQAMVNLIIRSFDTKDFLARKQFLKN LANKIDAKYGKGRVKIEMRDQYKSPGDLIKQNPYVVNLVHHAYKQLNITAKHIPFRGGTD GDFISEKGIPTPNLFNGGANFHGPYEYVTIENMAKLSEVLVEISKLHVHLNDCRDETPLK R >gi|260196026|gb|ACQN01000041.1| GENE 24 25757 - 26824 728 355 aa, chain - ## HITS:1 COG:BH3996 KEGG:ns NR:ns ## COG: BH3996 COG3410 # Protein_GI_number: 15616558 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 182 350 18 184 188 140 44.0 3e-33 MVLAHLFNQIQLAARNEKNSNLYGTKNYFLVNHPEILKVYKEIAGQEAGLYKKDFTRPTS LINELDKKQAQVDIVVIDEAHLLLSHRDAYNNFTYDNQLIEIIKRSKVVILVFDPYQVMR TKTYWSTKRLEKITHQYPHEDYHLTHQFRMNASSELIDWFNTFTDEAKIMPFPKNARLGY DFRVFDDAEKMRQEIVKRNQEVGLSRILSTTGYPSILDGKNHYIEEGKFKMPWDQYNYTS KPWAEIPETINEVGSFYTCQGFDLNYTGIILSPPFSQIPGTNKVQIDTSKFTDTEAFKKR ADLFDPQELEQVKQRLFMNQINVLFKRGVYGTYLYAHDPLLRKTLFQAYREISQS >gi|260196026|gb|ACQN01000041.1| GENE 25 27106 - 27489 473 127 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851895|ref|ZP_05557283.1| ## NR: gi|256851895|ref|ZP_05557283.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 127 1 127 127 243 100.0 4e-63 MTWTKEELANFNESSTLQNHPFDSDKHWTEDNPVWCVVADNRLFIRGAKGDKATKWVLNG TANGGEVAVEGKLYQVNYNLVTDKETIKLVTEAYEKKYHGQYPIDLMVSEIAESGTVELI KDINKME >gi|260196026|gb|ACQN01000041.1| GENE 26 27511 - 28449 1153 312 aa, chain - ## HITS:1 COG:all1225 KEGG:ns NR:ns ## COG: all1225 COG0667 # Protein_GI_number: 17228720 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Nostoc sp. PCC 7120 # 5 294 14 311 315 155 31.0 1e-37 MNKESKIVLGAWAWGDNNSYFGNNYDQSHFQEVYDQAVKSGLTFWDTAFAYGAGNSERIL GNLMEHTPREELTISTKFTPQMADNSENPVEQMFEGSLKRLKTDYIDYYWIHNDADVEKW TPMVINLVKSGKVKHIGVSNHTLSEIKRVQKILVEAGLKLDAVQNHLSLLDRTSEQAGIL DYCRQNNIEFFAYMVLEQGALTGRYNQDNPFPAGSVRAQVYNNKLPQLTELLNNLQAIGD KHGISIAQTAMAWAMAKGALPIIGVTKVNQVKDAKAVTQVQLTSSEINQLEEVADKANVN TIGSWEQDMRED >gi|260196026|gb|ACQN01000041.1| GENE 27 28465 - 28872 461 135 aa, chain - ## HITS:1 COG:CAC0766 KEGG:ns NR:ns ## COG: CAC0766 COG0789 # Protein_GI_number: 15894053 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 4 124 1 121 126 95 41.0 2e-20 MANLTITEISKKYNITTDTIRYYERIGLLPNIPRKSNGNRYFTDGMQHFLEMVICLRHSG VSVDSLVEYVALIQKGDATLDARKELLEEQRDLLEEKKHNLQRSIDRLNHKISLYESGEI TEDKSYFKEYKINED >gi|260196026|gb|ACQN01000041.1| GENE 28 28928 - 29839 754 303 aa, chain - ## HITS:1 COG:slr0619 KEGG:ns NR:ns ## COG: slr0619 COG2159 # Protein_GI_number: 16331820 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase of the TIM-barrel fold # Organism: Synechocystis # 53 299 74 334 348 89 27.0 9e-18 MKIDVFSHFLPQKFYQKMLEIEPNLADTFPYVNNPILFDPVKRQESIPEGVKQVISAVNI NPEDFARADTAAKLCQMANEELNELVMSNEKFLAAVAMLPMNNLKVATEIIHQITSKENK LIGAQIFTRALGKSIADESFEPIFAQAEKDNVPLLLHPVFDERKPDNNLVFSWEYELGQA MLQLTENGIFEKYPKLKIIVHHAGSMVPFFAERINHILPKKQADDFKKFYVDTAILGNPS ALKLALDYYGSNHILFGTDAPFGIQPAGATNEIISALKETNIESKQLDKVFYENFYELFE NNI >gi|260196026|gb|ACQN01000041.1| GENE 29 29964 - 30716 1133 250 aa, chain - ## HITS:1 COG:SP1472_2 KEGG:ns NR:ns ## COG: SP1472_2 COG2461 # Protein_GI_number: 15901322 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 18 223 4 207 227 119 37.0 6e-27 MAEPKWLKDMNPDDYLKEDFDCKGKGKYTVSGIENDDPEWLDKAAKKVNAAEGDDYVKLD CGLMTVNQLNWMLRNTFGELTFVDENNQFLWYNRPTDPNYKMKAKRVPAQVGDTMGQIHP DVRDVIPNAKKVVHALRTKEGGHDDVYMPVPTGNLKELVLHYYKRVEDEEGNYRGIYEWV QDLYPFVKYFCETTGQKLVVDPDATTGATYRRNSDPDANTGASRKAEAEKMEEKPKVEEK PDANTGASEH >gi|260196026|gb|ACQN01000041.1| GENE 30 30910 - 31230 324 106 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851890|ref|ZP_05557278.1| ## NR: gi|256851890|ref|ZP_05557278.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 106 1 106 106 110 100.0 3e-23 MATIVALIFLLQSLIVPEILAFVFREFALFFGLLSVVLLIIALVLKAYQTFQLASLIDVG MFTAFWGVVVLFISQNYISVFTMIVPIFAVVVGIALIICGKKAESY >gi|260196026|gb|ACQN01000041.1| GENE 31 31532 - 33112 172 526 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 336 523 16 210 245 70 28 1e-11 MSLKYAQKRKVFLFIFFATIKACNILFVAYMLKLMLNVASSGKKDMMQLVGLAGITAVGQ LFFMCSNFLYEANKMEIIRQVNLYLKKKNIAYLVDRGDSDIKQGLSLMTNDLKQIETNRV TAQLDMIFQSITFVGALSFAFYNSWEMTLIFIVASLAPAVVQIFTSKIITQKAKIWTKTN ADYTQSVSDSLNGANAANLYNSRDNILVRATKSASKMEAALKSMNLTQAWALELIYSAAE LFCFIVPCTIGGILMMEGKLAVGTLVMLVDLAMNFITPVVTIFQEFNQVKSTVPMWEKSL RAVNYQLDDEVEKRDNFTGLEVQNLSYQTSSDKRTIFSNVDLKVNPGEKVLLMAPSGWGK TTLLRLMLGQKQPQEGKVLINQKDVTGNWESAHNYYSYVNQKPFLFDDSLRFNITLGRTC SEAELLAAIKEAGLNDLVESKGLDFYVGENGNKLSGGQIQRVEIARALLSRRPIILADEA TSALDPVMSKAIHETLLKNPQVAVIEVAHKISDYEKEMFDQIVKFK >gi|260196026|gb|ACQN01000041.1| GENE 32 33265 - 34176 853 303 aa, chain + ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 12 293 16 290 296 150 34.0 3e-36 MKQGTKILTLDNGYHLWTNTQGSGDIHLLALHGGPGGNHEYWEDTAEQLKKQGLNVQVHM YDQLGSLYSDQPDYNNPDIAKKYLTYEYFLDEVEEVRQKLGIDNFYLIGQSWGGLLVQEY AVKYGKHLKGAIISSMVDEIDEYVEAVNRRREEVLTKEEIDFMHKCEAEGNFDNQRYQDD VQILNINFVDRKQPSKLYHLKDLGGSAVYNAFQGDNEFVITGKLKDWHFRDQLPNIKVPT LLTFGEHETMPIETARTMEKLIPNSRLVTTPNGGHHHMVDNPDVYYRHLAQFIQEVETDT FNK >gi|260196026|gb|ACQN01000041.1| GENE 33 34235 - 34795 766 186 aa, chain - ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 186 1 185 185 192 55.0 2e-49 MVNAIELKKGMIFSQDGKLMRVLKSNHHKPGKGNTVMQMDLRDVRAGSVIHKTMRPSEKV ELVEVAKKGAQYLYAEGDNYIFMDTTTYEQYEITKDQLGDDALYLMPNIEVQLEFTDDGE LIGIELPATVTMKVAETQPEIKGATAAGGGKPATMETGLVVTVPDFINEGDELVINTQEG TYKSRA >gi|260196026|gb|ACQN01000041.1| GENE 34 34921 - 35835 685 304 aa, chain - ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 3 302 6 304 306 272 47.0 6e-73 MKSFTHFSRKEWASLNPNLNINVSHEELEKINSHGDVLSIKDVRQVYESLVAYIGVVFKQ SKEKEKKKADFLKRPISKRPFIIGISGSVSVGKSTTSRLLRLLLQRTYPELKIQRMTTDG FLYTNNELKAKNLMSRKGFPESYNMQRLNDFLTDVVRGKEDIVYPLYSQGISDIVPDEFG HVLSPDILIIEGINTLQLPPNGTIVSSDFYDLSIYLDADEELIESWFLSRFKELMEQNKD NPDNYYYHWANSDRTKAINAAKEVWQSVNLVNLREFIAPTKARANVVLHKTKGHHIDSVY LRCY >gi|260196026|gb|ACQN01000041.1| GENE 35 35907 - 37157 1103 416 aa, chain - ## HITS:1 COG:SPy0875 KEGG:ns NR:ns ## COG: SPy0875 COG0642 # Protein_GI_number: 15674900 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 412 1 410 410 318 43.0 9e-87 MIKKFRRKFIAVAVLSLAIILFASFGGVVLATQYRTDKEITNVLQLLAKNNGQLNQKAAR KTLGPDSNKDSLFKYRYFTLSLSSTGKLKLVDNTHISTISASDITSNSSLIKRTIKNTTS EGSIMINSNPYRFILVKSKSSNQTIAIFLDTTPITASYKHLFRVAIFLGISGLIFFTLIL FLLSNQAIKPIVEAYEKQRRFITNAGHELKTPLAIISANTEMEEMIGKSDEWTESTKEQV ERLTMLINQLISLARMSEKDELILERVNFSDSVKRAANSFKSLIQKDGKNYDIEIEPDLF VNGEKQSLYELVNILIDNANKYCDEAGRVSVNLNKGSLGRNAILQVKNSFKDGKSINYNK FFERFYRSDESHNSQKGGFGIGLSMAQDLVRVFGGKINASYDGKNVVLTVILKLRK >gi|260196026|gb|ACQN01000041.1| GENE 36 37164 - 37835 588 223 aa, chain - ## HITS:1 COG:SPy0874 KEGG:ns NR:ns ## COG: SPy0874 COG0745 # Protein_GI_number: 15674899 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 218 1 219 222 251 60.0 8e-67 MRILLAEDEKQLNRVLTVAMTSQGYDVDSTFNGQEAVEMAQRKAYDVMIFDIMMPIKDGL TAVKEIRASGDKTYIIMLTAKSEIDDKVRGLDDGADDYLTKPFSLKELLARLRSKERRED SYTTKKVQLANLFLDVENQEASSRNSVRLSNKETELLQYLLLNKEKKLSTQAIFTHVWKD SDEDEDIVWIYVSYLREKLKAIGADVEISGEKDGSFMLQVKKG >gi|260196026|gb|ACQN01000041.1| GENE 37 37832 - 38446 643 204 aa, chain - ## HITS:1 COG:SPy0873 KEGG:ns NR:ns ## COG: SPy0873 COG2357 # Protein_GI_number: 15674898 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 2 201 12 211 216 234 61.0 7e-62 MSIYGKYQAYLPLILEDMRQEITAMNEEYQKNHGQKLYEHFEGRVKSDKSMIEKCQRKQL PLTPESALIKNRDSIGVRIVTNFVDDIYTVIKLLELKKDIHIVKKKDYIKNAKPNGYRSY HLIIEKEVPFEDIKGQKPGHYFIEIQLRTIAMDTWASLEHEMKYKHNIKNPERISKELKR VADELASCDLSMQTIRQLIKEDES >gi|260196026|gb|ACQN01000041.1| GENE 38 38539 - 40833 2070 764 aa, chain - ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 1 754 1 762 774 499 38.0 1e-141 MNNFENEKRYEQAHLDEVLGLIKKKEAKLAGSIKSAEKEARNLNAHFFDDLKLDYDGYST SMDTALSIHQQQQMLAERQNAWQHSSKQLSTLKRLEKKPYFARVDFEEVGEKPETIYIGL GSFADRDDHFLIYDWRAPISSIYYDGKLGKVTYHAPSGEQEVNMTKKRQFMIENGHIENM FDTNESIGDQMLLEVLGEKSSTQMKSIVTTIQKEQNKIIRNTSADLLFVQGAAGSGKTSA ILQRIAYLLYRYRGNLTSSNVIMFSPNQLFNDYIENVLPEMGEQNMVQMTYWQFASRRLP GIAVENLFEQFENSEKNNKIKDFKDSIYFFKLVTRYAQLLKEKGMVFKDLYFRDKDKPFF SKEKIKDIYYSFPPNYKLSNRIDATRESLVNSLNHMITSESKKAWVADIIENLSQEQLNQ LYDRPDQEFESSEKEERFLARKIVIKELQKVNKKINHNQFLNIRRQYINFLRLVGKSVDF TKYGFSQEEWDKHISEVITGFKNKKIKMTDVSAYLYLYDLITGRRTNYEMRYAFVDEIQD YTPFQIAYLRFNFPRAKFTMLGDLNQAIFTKDSSHDLLNQISTLFDPEKTEVVQLTKSYR STKQITEFTKEILVQGEKIESFNRQGPKPTFYKRADFLAEIESLMSVIKENDAQKLTTAI ITKDLASSKAVFTALKEKSVKTTLIASANQRLVPGTIVVPSYLAKGLEFDAVVMWDASDK VYHNFDESQLVYTIASRAMYKLDIIYCEKLSPLLQVKKDLYIDK >gi|260196026|gb|ACQN01000041.1| GENE 39 41017 - 41691 801 224 aa, chain + ## HITS:1 COG:SP0617 KEGG:ns NR:ns ## COG: SP0617 COG5549 # Protein_GI_number: 15900525 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted Zn-dependent protease # Organism: Streptococcus pneumoniae TIGR4 # 54 210 80 236 240 134 42.0 2e-31 MKIINKLLKLGIWVGLIAFAVHLYQNDTSIQTAAKDSVAFLQTKVTQLVYPNSKSSANDD HNSTNNYTWSSNNATVYIDLDNQILYNAAVNAINSWNSTGAFTFKIVNSKKNANIIIKAM NDDSTNAAGLTNTSYNPVSHHLLKAVVKLNEYYLLNQWFGYDNQRIVNTAEHELGHAIGL SHTKEVSVMYPEGSYYTIQPRDISNVKQLYGENNQSSSSSINAA >gi|260196026|gb|ACQN01000041.1| GENE 40 41707 - 42357 823 216 aa, chain + ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 4 212 7 216 224 125 36.0 4e-29 MKKVYIIRHGRTYINHYNKMQGWCDTPLTNEGIDGAKKVAQVLKNIPFDLALSSDTKRAS DTCELIMKENINHNQLQHLTSKFFREQFYGYFEGMDSDMAWRMIAGPVGLRNLQDLLDNY SIDEIKDLMKKSDPYHDAENAQEYWSRLEQGLDLIRQLDGYENILLVTHGFTIRSLVAKY GKGTFDIKTGPRNSSITMMELTDTDTKITSYNQLTL >gi|260196026|gb|ACQN01000041.1| GENE 41 42398 - 42847 561 149 aa, chain - ## HITS:1 COG:PAB1489 KEGG:ns NR:ns ## COG: PAB1489 COG0105 # Protein_GI_number: 14521543 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Pyrococcus abyssi # 3 149 8 156 162 137 46.0 1e-32 MIQNEYSLVLVKPDGVKAGHVGDIITRIENRGYKIEALKVINATEDQLNEHYIDSVGKPY FPHLLNYMTSGPMIGIIVSGTHVIEVLHKMAGATNPSSAEMGTIRGDFGREWPDDNIRNV IHTSDSQESAEREAKVWFSDFDFSKIENY >gi|260196026|gb|ACQN01000041.1| GENE 42 42926 - 44725 1598 599 aa, chain - ## HITS:1 COG:SP0913 KEGG:ns NR:ns ## COG: SP0913 COG0577 # Protein_GI_number: 15900794 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 4 593 7 659 662 117 22.0 8e-26 MIWKLSLTGIKSRFKDYLVLFSGLVISSTIFYMFLSLALNPAFLRKNMSFSISITQYIFI FGAILLGIITVAYVNFANNFLLSMRKKDYGTYLMLGAKSRKIGNLIFSETLITGFLSTIV GILLGILVSHVVTDMLLNLIQIKISSYSSFVFNAVLYTVLFYIAIFFLAAIFNRIKLTKT PVIKLLKEEQSPVTITKKKFLRIIFAILGIGLLATGYSLLLKKDIDLKIIVASFFTITFG SYFFFKASLGMAIDFLRLRHQILYKKLHSFTLGQLKFRIEEYTQILAAISIFFALALGAI TVGMRFESYKNQYASTTYYDAVVQKETAKTTRLLKEIKGKTTARYNFKETNKVIYFNQSS FKKTPLVNLVFDEKAVSSQSDAIEHMKTVKLTAKKNEIAQMTELLQEFLQTGKKIQFVSN SEYQKLTGKVKQFQLIRTKDMRANYSNLKELNEEQTDSSQGLVPLRPVAYQMVIGLVSGF EFMGFFLGVAFLAMLASTLMFKVLTGAKKDQIRYQMLSKLGFRDKQIKSAINQEVGILFF LPAVLGLCHVLFGLKLFERIVIKPYQDFWIPFTIFLLLYLIYYFATIKLYQSIALKKVK >gi|260196026|gb|ACQN01000041.1| GENE 43 44740 - 45489 284 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 222 1 219 223 114 29 2e-24 MSNLVNVKEITKTYGKKGQKQFTALKGISFEAKKGDFIVIMGASGSGKTTLLNILSTLDK PTTGRVEINGKDISNLNKNAMADFRGKEIGFIFQDFNLLENLSVRENIALPLSLQNYPVK KINPLVEKVANRLEIADLLDKYPAQLSGGQKQRVAASRALVHEPAILLADEPTGALDSKS ARELLTTMEELNEQGVTTLMVTHDPFSASFGKRIIFIKDGKIDSELAKGNKERKDFYQEL IDKLGTLEN >gi|260196026|gb|ACQN01000041.1| GENE 44 45662 - 46933 567 423 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 27 415 31 422 425 223 36 2e-57 MIDNQPQKTKVVVAGVNLSDPNFDYYMTELVNLSEANNMLVVGQVRQNLEQIYGGTYFGL GKLNEIKNLAHGLHATAVVLNDELTPMQIRNIEKITKLEVIDRTELILEIFANRAKTRQA KLQVQLARLQYELPRLHPSENTLDQQRGGGSVNRGSGESKLELNRRTIDKQITTIKKELQ NVATQEEIKSKRRNNSKLPQVALVGYTNAGKSTTMNGLLKVFGSDTGKEVFVKNMLFATL DTSVRRINFDGTNDFIISDTVGFISKLPHNLIESFKATLKEASDADLIVNVVDSSDSNML QMIKTTQKVLHEIGITNVPIVTAYNKADLTTKKFPEIEGNDILYSAKDSESIKVLAKFIT KRVFSNYKSLNIKLPLNAGALLSYLHENGDVKKEEYTNTGILITVKLSPKDYSKFSIYKQ KSE >gi|260196026|gb|ACQN01000041.1| GENE 45 47032 - 48282 1408 416 aa, chain + ## HITS:1 COG:no KEGG:LBA1739 NR:ns ## KEGG: LBA1739 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 333 1 333 336 220 39.0 7e-56 MKKYTKITMLTSVALLTLTLATNNHSVYAADFSQEESQQVVDYQKQYQAIDKSTYSNQNM YDSTPTDTDSGKLNSQYIKTSLDYINYYRKLAGLNAETTTDSANNDAQLAAWALAKVNYP VSKDAHGILNTQKPEGMTDSDWDKAQLASFGNITFTHNYDGSSNPETDVNSPFLDNNNID GTALTGHRDLLLSARASRIGFGAAIGTNKIKYTVQNGVFADDLLKSNIWADVSFPSKELY PIELLQHENTPWSIYLGNTEVVGTPVITITDKDTGKTYTATNVKNLGRFNWAYGYKTTID YMPTGVELVLGHEYLVKVGNVYSYSFKLFSQLGNGVPVTKLPQTVTNQKTKPLQIQKSTF ENKSNIKSSVKSQLIKSSNAIASQKTLPQTGNKSWLLALMGFLSITLGLAVGKKYN >gi|260196026|gb|ACQN01000041.1| GENE 46 48338 - 49345 1249 335 aa, chain - ## HITS:1 COG:CAC2943_2 KEGG:ns NR:ns ## COG: CAC2943_2 COG0791 # Protein_GI_number: 15896196 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 204 335 3 135 136 114 48.0 2e-25 MNFKRNLAKISAATAFALAGVATVNTLNAPTSVHAATLPYAVKINYVPGYGIAVWNNYNN PELIAGKKLAHGTAWRVFAQATDSNGELWYNLGGAQWIMAKYTVDASSSDSSTSKVSQPR VSVATVNYVPGYGIAVWNNYNNPELTGKILPHGSSWRVFAEATDSNGELWYNLGGAQWIM AKYTLGGSSNTSSSSNVSASSNNGSSSSASNTTQATTSSAAKVVSLASAQLGKAYVWGGN GPSAFDCSGLVNYVYSQVGISLGRTTYVQVNHGTTVSMNNLQPGDLLFWGSASAPYHVGI YVGNGQYIHAATPSQGVIKQSISQYFYPSVAKRVL >gi|260196026|gb|ACQN01000041.1| GENE 47 49515 - 50099 513 194 aa, chain - ## HITS:1 COG:HP0321 KEGG:ns NR:ns ## COG: HP0321 COG0194 # Protein_GI_number: 15644949 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Helicobacter pylori 26695 # 13 191 7 185 206 70 32.0 2e-12 MNFKRGELFLKKLIIIAGPSGAGKTTISDYLEEKYQIPRVLTHTTRAIRPGENKEAYYFE TEESFSKLHLFESVKYGSYQYGSSREGLEKAWETSDIVSIIVDTAGVKSYVEKLQPNQFY FIYLKVSNLDTLEERLVERGDEPTEILKRINSREFKRDLQLSEGLKKYSHILINDNLEET QRKIDKIITKLRKN >gi|260196026|gb|ACQN01000041.1| GENE 48 50158 - 50448 320 96 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1701 NR:ns ## KEGG: LGAS_1701 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 95 1 94 96 92 69.0 6e-18 MKKNDVKIGAIVEARSQEELKCPFQGKVEKIYENSALLSITSFDPKDAASVSDLNNKMVI NFKYLKAVKSPKKSAKTPSSNDVKISKIDDDSSNKK >gi|260196026|gb|ACQN01000041.1| GENE 49 50520 - 52073 935 517 aa, chain + ## HITS:1 COG:no KEGG:LBA1747 NR:ns ## KEGG: LBA1747 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 7 514 1 501 503 468 52.0 1e-130 MVRRIPVNNKIKKSLYWFILLQPFLDFYWFYNPPLSTILPFTFPTIIRIFAVATLLGMFF SKKYHWQKIGKHWWIIAYTIVLIIYSALHIWHVKSFVSVNPNDYGYTTTGEIFYLIRMFL PIVVLYITANSNTEKKDFVRVIQSLVASISITIVLSNLFLISLMSYGNQFIQGNIFSWFS GKRMSYFLLASKGFFNFANTISAILFMLLPLMLYILVTQFNLINVILYIFQSLAMLELGT KVAAYGLIISSAIFVFLYLIHHFVFKNIKINNYAISIIVLGTLATGLIFPFSPAIQRGNF EEKITELRSNKKNHIKSHKQVDVSQTLKEGLKKHSGKKREKFLKNFFAKYSDFYSLNSRF VKQSYSYKYDPEFWLEIIKLPVQDRMNNRLIEQKMLNQVLKTNNNKLDKWLGISYVRETN IFNLERDFIAQTYSLGLIGMIIFVGIYLVILIYAGFKWIINSQNRSFLNSCLLTSSSFLI FSSYYSGNVMDFLTATLILSFIMGYLLKSLNTTKKAA >gi|260196026|gb|ACQN01000041.1| GENE 50 52085 - 52711 555 208 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1632 NR:ns ## KEGG: FI9785_1632 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 4 207 5 208 208 210 53.0 3e-53 MFNWNWLGILVWLVLLGYLIFISYHIRKRHLKMIVMQQKHFTWRTLGLDFLEILILLIGL FIQIQNSFFDNPSLTVKSQIEQSIEYKPLVLSSASDRSYYVTSNSVQKKKLYQRYSFFTE GNQYSVTSDWATISDGSVALNTVAQKLPYSKQVLAKYDTKYQKAYVAIYEAKYKNTWQNG LGLHVGRTALRYYLIRVPDSTFVREVKN Prediction of potential genes in microbial genomes Time: Wed May 25 14:14:53 2011 Seq name: gi|260196025|gb|ACQN01000042.1| Lactobacillus jensenii 115-3-CHN cont1.42, whole genome shotgun sequence Length of sequence - 29655 bp Number of predicted genes - 27, with homology - 27 Number of transcription units - 11, operones - 6 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 65 - 124 9.4 1 1 Tu 1 . + CDS 219 - 1784 1902 ## COG2132 Putative multicopper oxidases + Term 1811 - 1839 2.3 - Term 1799 - 1827 2.3 2 2 Tu 1 . - CDS 1834 - 3042 1363 ## COG1316 Transcriptional regulator - Prom 3108 - 3167 8.0 + Prom 3084 - 3143 12.2 3 3 Tu 1 . + CDS 3211 - 4998 1671 ## COG1164 Oligoendopeptidase F - Term 5020 - 5072 1.1 4 4 Op 1 3/0.000 - CDS 5086 - 6609 1406 ## COG1620 L-lactate permease - Prom 6632 - 6691 6.8 - Term 6673 - 6701 1.0 5 4 Op 2 . - CDS 6708 - 8243 984 ## COG1620 L-lactate permease - Prom 8270 - 8329 9.1 - Term 8311 - 8347 4.0 6 5 Op 1 42/0.000 - CDS 8353 - 9144 772 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 7 5 Op 2 . - CDS 9144 - 9800 212 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 8 5 Op 3 . - CDS 9866 - 10654 911 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 10675 - 10734 3.7 - Term 10679 - 10715 2.0 9 6 Op 1 19/0.000 - CDS 10739 - 12703 2849 ## COG1299 Phosphotransferase system, fructose-specific IIC component 10 6 Op 2 10/0.000 - CDS 12736 - 13650 1254 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 11 6 Op 3 . - CDS 13651 - 14406 782 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 14460 - 14519 2.8 - Term 14496 - 14539 5.3 12 7 Op 1 . - CDS 14549 - 15301 705 ## COG1794 Aspartate racemase 13 7 Op 2 . - CDS 15322 - 16872 1668 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 14 7 Op 3 40/0.000 - CDS 16907 - 18070 875 ## COG0642 Signal transduction histidine kinase 15 7 Op 4 . - CDS 18072 - 18758 933 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 18794 - 18853 6.3 - Term 18806 - 18849 8.6 16 8 Op 1 35/0.000 - CDS 18862 - 20202 212 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 17 8 Op 2 35/0.000 - CDS 20190 - 20702 363 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 18 8 Op 3 . - CDS 20713 - 22440 1599 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 22485 - 22544 3.2 - Term 22482 - 22522 2.2 19 9 Op 1 . - CDS 22553 - 23317 870 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria 20 9 Op 2 4/0.000 - CDS 23328 - 24428 1395 ## COG0012 Predicted GTPase, probable translation factor 21 9 Op 3 1/0.000 - CDS 24456 - 24716 310 ## COG4481 Uncharacterized protein conserved in bacteria 22 9 Op 4 25/0.000 - CDS 24709 - 25617 1188 ## COG1475 Predicted transcriptional regulators 23 9 Op 5 25/0.000 - CDS 25595 - 26374 786 ## COG1192 ATPases involved in chromosome partitioning 24 9 Op 6 4/0.000 - CDS 26387 - 27229 775 ## COG1475 Predicted transcriptional regulators 25 9 Op 7 . - CDS 27245 - 27964 678 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division - Prom 28107 - 28166 8.5 + Prom 28043 - 28102 5.7 26 10 Tu 1 . + CDS 28142 - 28672 467 ## LGAS_1745 membrane ancor connecting MutS2 with cell-division Z-ring + Term 28678 - 28709 3.1 - Term 28665 - 28696 3.1 27 11 Tu 1 . - CDS 28700 - 29629 1159 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis Predicted protein(s) >gi|260196025|gb|ACQN01000042.1| GENE 1 219 - 1784 1902 521 aa, chain + ## HITS:1 COG:Cgl0921 KEGG:ns NR:ns ## COG: Cgl0921 COG2132 # Protein_GI_number: 19552171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Corynebacterium glutamicum # 31 466 40 489 513 249 35.0 1e-65 MTEKVYTDYFYDEADFDKNHFRYKNLHIPDGVEAQPLAVPPVLKPDKVDGNDVWFTIESL EGETQFLPGSKTKTWGYNAPFLGQTMVLKTGQHVHVTLKNSLKELTTYHWHGMEVPGPYI DGSCHAPVYPGEEKEIEFTVEQPAALTWLHAHPCPSTAAQVWMGLAMGVVITDDHEAELP IPKAYGKDEFPIVLQDRVFHKDNQFDYRADYDPMGVFGDTPLINGIIKPYIDVTTQKVRL LFLGGTNRREWRLHFDNDLVMTQIAGDDSFLEHPVKMTKLLVGPGERLQVIVDFSGYKSG DVVNLYTDDFKLIEFRIHDFEEDNSVLPDTLFTPTDPKVDPDAPIRKVTMDDHDKINGKQ YSMQRIDMKAEVNHAEYWDVTNTNSKSHGMLHPFHIHGAHFLVVSRNGQTPNPNEIGVYK DTIEVAPQETVRLKVIFPKEGLFMYHCHIIEHEDAGMMANILIVDPTKPEPHYDLMDMET LTKAFAEEKGIPESEVFMPGMCTEGYMDHCHDDANSGASHH >gi|260196025|gb|ACQN01000042.1| GENE 2 1834 - 3042 1363 402 aa, chain - ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 43 343 9 319 338 192 37.0 7e-49 MTKNHPDSREEYRFKQRSGRLLSRNQFFTANKQIASNKNFKKLLTLIVFLVVGFVATWGS HFYFNLEAALGNTYQGGTPATQITNKQPISVLILGVDQGIENRHDQGNSDTMILATANPQ TQKSTLTSIPRDLLADIKGDNGKYFMFRVNSAYQVGGNKAAMKTTKALLNTPINYYMEVN MKALQELVDAVGGVDVKVPFSFTYNTTFKKGKMHLNGKQALDYARMRKEDPRGDYGRQLR QRQIIMAIVKNALSLNSISNYKKILKAFSKNVTTNMTFSDMMAIAINYRSVANNIKSDYI HGHDAWIDGASIQVASTSELQRVSNYTRTNLGLKKQKLSNEETRQNRLNEKYNAIDWTNP NAFTNYQVFPANSDSAVNSDSGSNYNTTYNNNVSEYDNGGNW >gi|260196025|gb|ACQN01000042.1| GENE 3 3211 - 4998 1671 595 aa, chain + ## HITS:1 COG:SP0979 KEGG:ns NR:ns ## COG: SP0979 COG1164 # Protein_GI_number: 15900856 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Streptococcus pneumoniae TIGR4 # 1 595 1 594 600 550 49.0 1e-156 MVLPTRNEVPKELTWDLTRVFPTDQAWQKEFESVSNEISNLNNLSAIITKSGNDLYSALT QIFSIDRRLEKIYVYATMSRDVDTSNNHYLGFAAMAEDLANKYSSAISFINPAILSLSNQ VLKEFELQEPKLLNYKHYLDQITNKRNHTLDAQSEQIIAASGAALGSSSNTFNVLTNSDL EFGYTTDNDGEMVQLTEGLYSQLIQSPKRTVRKNAFETLYASYGQFQNTLASTLSGNVKS QNYVALMHGYNSAREAVLAQSHIPVSVYDNLIKGVHKHLNLLHRYMKLRKKVLGLEELEM YDLYVPITGTPSLSYSYSESKKQAREALSILGKEYLDQVDYIFNNRVIDVVESKGKVTGA YSGGSYDTDPYELLNWTNDFDALYTLVHETGHSVHSAFTRKNQPYIYGEYPIFLAEIAST TNENILTEYLLSKATDPKIRAFILNYNLEAFRTTLYRQTQFAEFEQFIHEADQSGEPLTA EKLNSFYGELNQKYYGIVEPGSDIDKEWSRIPHFYYNFYVYQYSTGFAAAVALAKNIVHG TEKQKADYLAFLKAGSSEYPIEIMKKAGVDMTTSTYLDSAFSVFEQRLNELEKLL >gi|260196025|gb|ACQN01000042.1| GENE 4 5086 - 6609 1406 507 aa, chain - ## HITS:1 COG:BB0604 KEGG:ns NR:ns ## COG: BB0604 COG1620 # Protein_GI_number: 15594949 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Borrelia burgdorferi # 11 498 10 500 500 303 40.0 4e-82 MNSLIQLFLDLLPIIWLIISLGVFKMPAVKATSIGLALTVLLSILGGKLTVTKTFLGALD GATMGLIVISYVVVAALFAYNSASYSGNMRVIQNALSHVSTDPRILVLLVCWAFGAFLES VAGFGIAVAIPAGILISFNIKPIKASVISLLANTATTSFGAVGLPVITLADVTKLNSQTL AIFVSLQLLLLCILVPFLLVLLVDSSFKELKKIWYYPLTAGLVYGIVQLVVSYLLGPELP TIVASLATLIVLIMLAQRKNKSSVKQEKHTLTEIAVATAPFILIFSLVLVTSPLFPQINN FLNNFQIGFQIYPGQDNGQTFSYLVSPGTIILLSAIIGGLVQKVSLQEQLKILILTLKSI WKTIITVCAIVALAKVMDYSGMTTTLATSLVKGLGPIYPLFAPIIGAIGSFATGSNTSSN VLFGDLQLSAAKNLGVNKYWLVASNMAGSTAGNMLSPQSIAVATTGVKLEGKEGIILKDA LKWAGLYLGVICIFLYLIGLIFGMIRL >gi|260196025|gb|ACQN01000042.1| GENE 5 6708 - 8243 984 511 aa, chain - ## HITS:1 COG:BB0604 KEGG:ns NR:ns ## COG: BB0604 COG1620 # Protein_GI_number: 15594949 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Borrelia burgdorferi # 9 500 6 498 500 321 42.0 2e-87 MNANMWIKFIFALLPIIWLIMSLGFLKMAATKATAIGLIITIILAKFSFKMPVTNIFNAA LEGVLMALFPIIYVIVAALFTYNVTNQSGSIKIIQDLLSSISTDRRILVLIIAWGFGGFL EAIAGFGTAVAIPAGILIAFGIDPIRASVICLIANTTPTAFGAIGLPVITLSNLTQINGN ELSAYVTLELLPLIILIPFVLVVLVENNLKAIKGVGGICLASGLAFALPQIIVAKFVGPE LPAIVGAIFSIVVTISLAKLKNQNKEQAKDLEMKSHSLNQILRAMSPFILVFVLVLMASP LVPSINQFLNHFIIKFSIGKGSFSFAYIASPGTLIIIATIIGGLIQKIKLQQLGKIFITT IKGLGKTTLTVCTIVALAKVMGYSGMTNILAVSLVALMGPVYPLVAPLIGAVGTFITGSD TSANVLFGNLQLSAARSLEANVDWVVASNMVGATAGKMISPQSIAVATASTGLEGHEGEL LKQALKWFSLYLVIICLYLFGLGIILGMLKY >gi|260196025|gb|ACQN01000042.1| GENE 6 8353 - 9144 772 263 aa, chain - ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 253 4 258 269 90 32.0 2e-18 MFAYEFMRYAFWASTFIAITCGVVGVYVVARSFSFLAHTLSEIGFAGAAFAVFMGINPLW GMLLFTLLGSLGVGELSIHSNQKESSISAISALFIGLGVLFLSLAGSNSRYATNILFGSI IGVDLEGVIQLTVLSLLVLIIIAIIQRQLNFDSFDHIGALAHNVNVSLVGIIFLIVMAMA VSVGSQVVGSLLVFILLTLPASTARYLGKTIPAMIAWSVGLALIGVWVGLYLGFITNWPV TFFISVIEVLVYLTVYLAKIVKR >gi|260196025|gb|ACQN01000042.1| GENE 7 9144 - 9800 212 218 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 218 1 229 305 86 26 2e-16 MAKVLTVENLTMKFDEQTVFENLNFALKKGSMTALLGPNGAGKTTLIRILMNMLTATAGV FKFSQNTKIGYVPQFRNIDSDYPLSIRAFIELNTPLFKSASVKKRVDNILKETNLLEIQN TRMGEASGGQKQRAYLAQALLDEPNFIILDEATASLDPVAKEELMTLIKHLNEKHGLTVL FTTHDIPLAKKYMKDYLLFKDKNLEHNKISQLTKEAYE >gi|260196025|gb|ACQN01000042.1| GENE 8 9866 - 10654 911 262 aa, chain - ## HITS:1 COG:STM0867 KEGG:ns NR:ns ## COG: STM0867 COG0561 # Protein_GI_number: 16764229 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 2 261 3 264 271 134 34.0 2e-31 MIKLIATDMDGTWLNSDKKYDVDLFEKDIALMKKNNINFVIASGNQYDNLKTRFPNNVND LYFVAENGALVAKGNQILAIEDLTIEEINEIQRACIKYKYPVVWAGLNSAYVLKSDGNEL YQEMKKYYHKLQAVNSFDEIDDRLFKMSFVILHDNVLDLVTEMKEKFPKLGFVAGSEFTI DVSKVDMNKAVGLKLLGKKLGISSKEMVAFGDSGNDVAMLKYVGKSFATSTAQIVAKEAA DELIGSSDDSSVQRKIIALLSK >gi|260196025|gb|ACQN01000042.1| GENE 9 10739 - 12703 2849 654 aa, chain - ## HITS:1 COG:FN1441_3 KEGG:ns NR:ns ## COG: FN1441_3 COG1299 # Protein_GI_number: 19704773 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Fusobacterium nucleatum # 304 646 1 321 328 279 48.0 1e-74 MRIKDILNPESMIMSLKATNKEEAINEMADLEVATGVVNDKDEFVKSIWARENQSTTGIG EGIAMPHARNKSINKARVLFAKSDQGIDFDSLDGQPVHLFFMITAPDGADNTHLQALAKL SGLLVNPDLIAKLKAATKPEEIIDIFTAAEDAKDAEEKSAAEKAAAKKAEDAKEDKSDKP LIVGVTACINGIAHTYMAEQALIKAGEKLGAEVRIETNGSEGVKHELTADEIKRAKGVII ASDKKVKMARFDGKELIAGPVVDGINKPEELVKDILAGKGSVYHDSGNSEEASEAKASGL HAIYQQLMNGISHMLPFVIGGGILMAISFLVEQYMGGAKTEAFVFLNNAGSMAFAFMVPV LAAYIAEAIGDAPALMPGFVGGFMATVYKGSFGGAYVASVNHSANSAAGFLGGIAAGFIA GYIVVGLKKLFKGLPKSVEGMKPMLIYPILSLLLTALVMFFIINPIFGALNAGITAFLNH LGTGNLVLLTAILAGMMSIDMGGPFNKAAYVFASGAFANDPNSKTAAILMAAVMVGGMVA PFATAIASAFFKNKFTDEERKAGITNWILGFSFITEGAIPFAAADPSRVIPSSVIGSAIA GALVGLLHVGVPAPHGGFWVSPLATNIPGYFLAVIIGSIVAAVILGFWKKPVNK >gi|260196025|gb|ACQN01000042.1| GENE 10 12736 - 13650 1254 304 aa, chain - ## HITS:1 COG:lin2430 KEGG:ns NR:ns ## COG: lin2430 COG1105 # Protein_GI_number: 16801492 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Listeria innocua # 1 303 1 303 307 285 50.0 5e-77 MIYTVTVNPALDYVLQLEKVNTGEVNRTNDCQFLAGGKGINVSQILNQLKIDNTAWGFVG GFTGTELVRQLNQKQIVSDFVKISDTTRVNVKIHAEVESEINAAGPQITEQEIAAFKSRL ADLNEGDIVVMSGSLTPSLGADFYKDLLPTIKEAGAEFVVDTTGQALLDTLEYKPLVIKP NHHELADLFGVTFNSNEEMLTYAKKLLDMGAQNVMISMAKDGGYLVTQDGVYHAAGAKGV AVNSVGAGDSMIAGFVGTYFETKNSVEAFRIGMACGAATAFTKDIAVKSQIDAVLPQIKV EEVK >gi|260196025|gb|ACQN01000042.1| GENE 11 13651 - 14406 782 251 aa, chain - ## HITS:1 COG:BH0826 KEGG:ns NR:ns ## COG: BH0826 COG1349 # Protein_GI_number: 15613389 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus halodurans # 1 237 1 235 251 158 39.0 1e-38 MLTQERQSMIKNYVDQHDFCRVVDLCKLTQSSESTIRRDLSEMDQLGLLQRVHGGAQAVN RSIRDIAQHIRFTINVEQKRKIARYTVQNFVKPGSYIFLDAGTTVYEMVPFLKEVADLTV VTNSLDTAVELLKEDIPTRVLGGKLKKQTHAIVGEIAIKQLSNLNFTAAFIGANGLSKMG DFTTPDPSEAAIKRQELLQSKQVFVLMDSAKLFDEHFAKFAHVSEVTLITNPLSSDQKNK LPDDLVYEEAD >gi|260196025|gb|ACQN01000042.1| GENE 12 14549 - 15301 705 250 aa, chain - ## HITS:1 COG:L92665 KEGG:ns NR:ns ## COG: L92665 COG1794 # Protein_GI_number: 15674208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Lactococcus lactis # 1 229 1 230 240 197 44.0 1e-50 MKHFFTILGGMGTIATESYVRLINHRVKISKDQDYLNYILVNDAQIPDRTAYIKDHTKEN FFFALKDDVEKQSLLKPDFFVMPCNTAHYFYHDLAALTDIPFLNMMDIAVHHFMEKFPKE EKIGLIATEGSIFDKLYENSIVKNGRKVELGGNEIQPLVNELIYSDIKENGYVDGELYHR ILRKMHDDYGCNVILLGCTELSLAQEKAPNHPYNVIDPQSILADVTIELALKIRNGMDVN KAVSKYLYQD >gi|260196025|gb|ACQN01000042.1| GENE 13 15322 - 16872 1668 516 aa, chain - ## HITS:1 COG:L53929 KEGG:ns NR:ns ## COG: L53929 COG0769 # Protein_GI_number: 15673788 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 32 508 37 480 483 336 42.0 9e-92 MSISLNTCILILKEHHLLKSSAVQDSVPTKMDYISYDSRDIQTNTLFFCKGAGFRPTYLS MAKDNGATCYVAEQPFPEGKGMHALVVRDVTKAMALLSAAFYRFPQDDLFLVAFTGTKGK TTSAYFLKGIFDKMNGGKTALFSSVNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNG MTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLLVNSRK CIINAETDHFPEVYAAATTTTNPDSIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQ LFCASDKAKHLAIEGEYTLDMIGDFNEINGTAAIIGAGLGGANHEHASEGIRHVTISGRM ETEKTKNHGLVVVDYAHNKASMMALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSL SVFADKAFLTTDDPGFEDPMDIAEEIDAGIDHAKVDVTIELDREKAIREAISMAGKNDVV LICGKGADPFQKIRGVNTPYPSDIVVARNAIKELEK >gi|260196025|gb|ACQN01000042.1| GENE 14 16907 - 18070 875 387 aa, chain - ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 69 375 80 379 380 187 37.0 2e-47 MKKKRVKLTGREKSELFAEAVVTIILLLLLNLSVIILINLAILTNQSLENGIYFLKSTLI FGNGLHIWSWQRIFVFFMGCGDMLVLYWRLLRRYHQMQLRHVIQELHYIAEGHFDHRISF VVKTDLQKVIDSINFLVDSTVNAMNEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLK ADNSLTADQLKYVDIAYNKAGQMKALANDLFDYTTLNSTKTKVNMAPLHLTSMLEQVAAG FELEAEEKNISLNVNTKPDDLVIDADAEKLVRVFNNLISNALKYGHGASFINLSAKKIKA NLVEIRVENDGEAIPKEALQKIFERFYRVETSRNTKTGGTGLGLAIVKEVIDLHHGKITC ESNDQLTSFIIHLPFKVALPESKATVL >gi|260196025|gb|ACQN01000042.1| GENE 15 18072 - 18758 933 228 aa, chain - ## HITS:1 COG:CAC0830 KEGG:ns NR:ns ## COG: CAC0830 COG0745 # Protein_GI_number: 15894117 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 227 2 229 229 214 52.0 8e-56 MKIIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPQMTG IDVIKELRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQ KKVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEIF ERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVEA >gi|260196025|gb|ACQN01000042.1| GENE 16 18862 - 20202 212 446 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 190 436 259 515 563 86 27 2e-16 MLILSWQLTIVALVIFALAVGIVKYLTNKSGNYFKIQQKKLGELNGYNEEMLSGLKVIKV FSHEEFAKKDFEKYNEELRIASGNANVYATVLFPIMGNIGNISYVLIALIGGVSAINGYL PLTLGAIASFLQLSRSFSMPIAQISQQLNSIVMALAGADRIFNLLDQEKEIDQGQVTIAP DREVKGAWDWQVPSENAVKEVPVKGHISFKNVNFGYVPDKQILYNINLEAKPGMKVALVG ETGAGKTTISSMINRFYEISSGQILYDGIDIKNIRKDDLRQSVAIVLQDTHMFTGTIMDN IRFGNPDASDDDVYQAARLAHADEFIHELDDGYNTVIDGDGGDLSQGQMQLLSIARAMIA DRPVMILDEATSSIDTRTERMVQQGMDNLLAGRTSFVIAHRLSTIVNSDIICVLDHGHII EAGNHQELLAKKGYYYELYTGKKEIE >gi|260196025|gb|ACQN01000042.1| GENE 17 20190 - 20702 363 170 aa, chain - ## HITS:1 COG:CAC3415 KEGG:ns NR:ns ## COG: CAC3415 COG1132 # Protein_GI_number: 15896656 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 12 170 14 172 627 153 47.0 1e-37 MEKQQQPVKKRKALKRLLMYVLKTGPAAFPLSLLGIVISAFSTVYGSLFIERLIDDYITP MLKESTPNFTPLFRAIIMLGVIYLIGVVATYAYTLLMMILAQKVQKSIRDDMFKHMQYLP ISYFDQNEYGDIMSRYTNDIDTLMQMISQSIPQFVNSTLVLFLFLVQCLF >gi|260196025|gb|ACQN01000042.1| GENE 18 20713 - 22440 1599 575 aa, chain - ## HITS:1 COG:CAC3414 KEGG:ns NR:ns ## COG: CAC3414 COG1132 # Protein_GI_number: 15896655 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 1 570 1 567 577 593 51.0 1e-169 MIKTLLKSVRQYKTQSLLSPLCVAIEVFIEMFIPYIMGWLIDNGIMKANMPYIVKTGSFL LIMAFFSLIMGALASYFSSKAAAGLAANLRQDMFFHTQDFSFENIDKFSSSSLVTRLTTD INNVQLAYQMVIRIAVRAPLMLVVSVIMAFAVNSELAVLFVILAPFMAILLALIIKSAFP YFPKIFKGYDRLNRTVRENVRGVREVKTYVHEKEQIEEFQKSSNYIYKLFTAAQKIMALN APVMMLLLNGSMLLLSWFGANLIVNKSMQTGQLVSMFSYSNSVLFSLMMLSMIFTQLTIS QASAKRIVEVIDEVPTISKPQQHPVTEFTNGDILFDHVNFKYEKDSDVYALKDINLHIHS GETIGIIGETGSGKSTLVAMIPRLYDSTGGAVRVAGHNVRSYDLKTLRDNVAMVLQKNVL FSGTIKDNLKWGNENASDEEVIAASKVAHADDFIKEFSDGYDTMIEQGGNNVSGGQKQRI TIARALLKKPKVLILDDSTSAVDTKTEKEIRLALRRDLPKTTKIIISQRIVSIKDADRII VMNHGKIEDIGTHDELIKRNELYSSINKFQEEQGK >gi|260196025|gb|ACQN01000042.1| GENE 19 22553 - 23317 870 254 aa, chain - ## HITS:1 COG:L196216 KEGG:ns NR:ns ## COG: L196216 COG4858 # Protein_GI_number: 15672175 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Lactococcus lactis # 34 244 3 214 219 67 26.0 3e-11 MNTREKNLANIQKQEEVQAKEEKQMNSEMQNPTSLRKQLTNKNGDYVFRLEKALIDAGKS SAEAEKMVNDLLNEIVTAQEQGIPASSLYKKSPILKAEEILHPVIKPKKPKYWMRAVDSS LLYFVVFTAMIAIMALTAGTKNQYNSQYGLLTLIAIAAILGTLMTYYTDILVAGGKGKAK FGKIALLTVAMVAVLFIVITIFSSKAFQIINPVLPAWGNLILVALVYGARYLFRKRYHIT GSVLNPVPQVKSRD >gi|260196025|gb|ACQN01000042.1| GENE 20 23328 - 24428 1395 366 aa, chain - ## HITS:1 COG:SP0004 KEGG:ns NR:ns ## COG: SP0004 COG0012 # Protein_GI_number: 15899953 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pneumoniae TIGR4 # 1 366 1 371 371 468 66.0 1e-131 MSLTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIEPNVGMVEVPDPRLARIDELIPA KKIVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIIHVVRSFDDDNITSVTGKVD PEEDINTINLELAIADLDAVNRRIGKVEKLVKGNDKDAKAELAVLQKIKPVLEEGKAVRS IDFKDDEKKIVKGLFLLTSKPVIYVANIAEDSMADPESDKYFQIVKKHAESENAGAIAIS AATEEEIAGLDDDEKQEFLEAEGVTESGLDRLIKAAYHLLGLRTFFTAGGPETRAWTFHE GMKAPQVAGVIHSDFERGFIRAEVVSFDDLDKYESMQKVKEAGRLRLEGKDYVVQDGDII EFRFNV >gi|260196025|gb|ACQN01000042.1| GENE 21 24456 - 24716 310 86 aa, chain - ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 8 67 5 64 65 73 46.0 9e-14 MTDTKLTYQLADTVLLKKPHACQVNNWEVLRLGADIRIKCMGCGHILMMPRADFNKRIKK ILTKANDPVNKKLEHYLPKENIALPK >gi|260196025|gb|ACQN01000042.1| GENE 22 24709 - 25617 1188 302 aa, chain - ## HITS:1 COG:BS_spo0J KEGG:ns NR:ns ## COG: BS_spo0J COG1475 # Protein_GI_number: 16081148 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 15 296 4 277 282 270 55.0 3e-72 MARDSRNNEPRKKGGLGRGIEALFEDTPTQVVQSVDGTEEVEELNLEDIRPNPYQPRKNF DDKSLKELSDSIKENGVFQPIIVRKSLDGYEIIAGERRFRASKLAKKPTIPAIVRDFDEA QMMEVAVLENLQREDLSPLEEAQAYEMLQKNLGLTQEEVSKRMGKSRPYIANYLRLLTLP KKAKKLLQHGELSMGQARTLLGLKDKDKIDDLAKKVVKEGIPVRKLEALVSAMNEKANKT SKNDKIRKSAFIRASESRLSTKFGSPVSISESKKGKGHLSIDFSSTDDLNRILTMLGIDL DD >gi|260196025|gb|ACQN01000042.1| GENE 23 25595 - 26374 786 259 aa, chain - ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 250 1 250 253 337 67.0 1e-92 MVDIISIANQKGGVGKTTTTINLAASIANRGYHVLIIDIDPQGNATSGLGIEKSTIHQDI YNVLVDEIPITDTIHHTSTPNLDIAPATINLSGAETELISMMARETRLKSALDQVANDYD FAFIDCPPSLGQLSINAFTASDSILIPVQSEYYAMEGLSQLLNTIRLVQKHFNKDLDVEG VLLTMLDARTNLGAEVVKEVQSYFSKKVYKTIIPRITKLAEAPSYGEPITEYDPKSRGAK LYDDLAREVLKAHGKRLKK >gi|260196025|gb|ACQN01000042.1| GENE 24 26387 - 27229 775 280 aa, chain - ## HITS:1 COG:lin2926 KEGG:ns NR:ns ## COG: lin2926 COG1475 # Protein_GI_number: 16801985 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 15 280 24 283 284 194 45.0 2e-49 MAFFFSKKNEIPKEKQIQDLELSKIIPNRYQPRHEFSEASIEQLAQTLEQEGLLQPIVVR EKGENYEIIAGERRFRAAKSLNWTTIPAIVQNMDDQKAASLALIENLQRENLNPIDEARA YEDLMKLNELTQTALAKDMGKSQSYIANKLRLLKLEPEVQSYLVSGAITARHGRAMLGLT PVEQSHVLHEILQKKLSVKETEAICEDVDGYFAKKAEEVKKATQKEPEKKRVVKTAKDLK VQINTIKQAVKLAKDSGIEVKSHEEKIDDGYKITIELHRK >gi|260196025|gb|ACQN01000042.1| GENE 25 27245 - 27964 678 239 aa, chain - ## HITS:1 COG:SA2499 KEGG:ns NR:ns ## COG: SA2499 COG0357 # Protein_GI_number: 15928295 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Staphylococcus aureus N315 # 1 238 1 236 239 248 52.0 1e-65 MKPELFIKQLAEKGFALSQKQIDQFSKYYQKLIEVNEYVNLTRITDLEEVYLKHFYDSLT PFLEYPELFKKARICDVGAGAGFPSIPIKILVPEMQLAIVDSLNKRLKFLADLTADLDLG QVELVHGRAEDIGQNVKYREKFDLVTARAVANMATLSEYCLPLVKEGGKFLALKGPKAES ELADAQKAITVLGGQVAATKNLRLPESDEERTLILLNKVKQTPKKYPRQAGTPSRKPLH >gi|260196025|gb|ACQN01000042.1| GENE 26 28142 - 28672 467 176 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1745 NR:ns ## KEGG: LGAS_1745 # Name: not_defined # Def: membrane ancor connecting MutS2 with cell-division Z-ring # Organism: L.gasseri # Pathway: not_defined # 1 176 1 178 178 181 53.0 1e-44 MIVTILVLLYLGWQTYKGFQIGFTRKIVNLILSAVFFSLAIILQNPFGNFLYSQYSGQNA AVASNQMELMAARFIAFFIIFYVSKHIKKMFSKWLPTKKSEKSFSSLLDGTLGALASLIA AYLFVYVILSMCNALQNQWFIQQTVDSPFLHFIIYQTPGLSNGVFNSLFSIGKTAG >gi|260196025|gb|ACQN01000042.1| GENE 27 28700 - 29629 1159 309 aa, chain - ## HITS:1 COG:L171943 KEGG:ns NR:ns ## COG: L171943 COG1477 # Protein_GI_number: 15672350 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Lactococcus lactis # 1 305 3 309 325 347 52.0 2e-95 MIEDLATHQVVKNHHALGTSITLQLFGTDQTWLLDQSIKLIDYYEDLFTVNRDKSEVMDI NHAAGLHPVQVSSATYGLVKLAVEKSLENFGFNALIGPVVKLWHIGFKGARVPSQSEIDE KMKLINPKKVVLDDEQQTVFLEEKGMELDLGGIAKGWIADRIRDQWRSFGVRAGIINLGG NVLFVGSSPKRLSGKWSLGVQDPIEKRGKNITSVMVPECSAVTSGIYERYLEVNGHKYHH LIDPRTGYPVETNLAGVTTFTKNSVDAEIECKRLFFAGKPVDGWLNDNRIGAVFVYQNEE VTYEGFDGK Prediction of potential genes in microbial genomes Time: Wed May 25 14:15:08 2011 Seq name: gi|260196024|gb|ACQN01000043.1| Lactobacillus jensenii 115-3-CHN cont1.43, whole genome shotgun sequence Length of sequence - 32245 bp Number of predicted genes - 33, with homology - 33 Number of transcription units - 21, operones - 7 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 781 643 ## COG2365 Protein tyrosine/serine phosphatase - Prom 821 - 880 7.9 - Term 794 - 825 2.5 2 2 Tu 1 . - CDS 882 - 1916 958 ## COG3589 Uncharacterized conserved protein - Prom 1961 - 2020 8.2 - Term 1975 - 2012 0.3 3 3 Op 1 1/0.222 - CDS 2032 - 2580 816 ## COG0431 Predicted flavoprotein 4 3 Op 2 . - CDS 2593 - 3129 469 ## COG0431 Predicted flavoprotein - Prom 3156 - 3215 9.2 - Term 3186 - 3227 7.2 5 4 Op 1 . - CDS 3228 - 3830 768 ## COG1309 Transcriptional regulator 6 4 Op 2 . - CDS 3898 - 4107 322 ## LCRIS_01861 hypothetical protein - Prom 4140 - 4199 9.4 + Prom 4099 - 4158 5.8 7 5 Tu 1 . + CDS 4189 - 5601 1567 ## COG4690 Dipeptidase + Term 5611 - 5657 10.2 - Term 5605 - 5638 6.1 8 6 Op 1 36/0.000 - CDS 5641 - 6318 233 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 9 6 Op 2 1/0.222 - CDS 6319 - 7377 1245 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 10 6 Op 3 . - CDS 7380 - 7904 525 ## COG1309 Transcriptional regulator - Prom 7951 - 8010 7.8 - Term 7988 - 8020 1.7 11 7 Tu 1 . - CDS 8023 - 8622 725 ## COG0406 Fructose-2,6-bisphosphatase - Prom 8777 - 8836 6.5 + Prom 8617 - 8676 6.5 12 8 Tu 1 . + CDS 8697 - 9449 844 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 9526 - 9558 2.0 13 9 Tu 1 . - CDS 9436 - 9783 215 ## COG3022 Uncharacterized protein conserved in bacteria - Prom 9812 - 9871 5.3 14 10 Tu 1 . - CDS 9895 - 10197 372 ## LBA1843 hypothetical protein - Prom 10259 - 10318 6.4 + Prom 10187 - 10246 6.3 15 11 Tu 1 . + CDS 10300 - 10962 777 ## LBA1844 hypothetical protein + Term 10966 - 11014 7.2 - Term 10960 - 10995 6.1 16 12 Tu 1 . - CDS 10998 - 13535 2638 ## COG0308 Aminopeptidase N - Prom 13568 - 13627 9.3 + Prom 13441 - 13500 8.6 17 13 Op 1 3/0.000 + CDS 13661 - 14875 1119 ## COG1376 Uncharacterized protein conserved in bacteria + Term 14895 - 14938 5.2 + Prom 14941 - 15000 8.8 18 13 Op 2 . + CDS 15040 - 15921 1024 ## COG0583 Transcriptional regulator + Term 15930 - 15964 6.2 - Term 15918 - 15952 6.2 19 14 Op 1 . - CDS 15967 - 16725 706 ## COG0710 3-dehydroquinate dehydratase 20 14 Op 2 4/0.000 - CDS 16734 - 17933 1025 ## COG0477 Permeases of the major facilitator superfamily 21 14 Op 3 . - CDS 17958 - 18881 1247 ## COG0169 Shikimate 5-dehydrogenase - Prom 18929 - 18988 7.2 + Prom 18951 - 19010 11.1 22 15 Tu 1 . + CDS 19032 - 19952 200 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 + Term 19958 - 20007 6.4 - Term 19946 - 19995 12.2 23 16 Tu 1 . - CDS 20000 - 21709 1749 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 21739 - 21798 11.7 24 17 Tu 1 . - CDS 21840 - 22955 956 ## COG0477 Permeases of the major facilitator superfamily 25 18 Tu 1 . + CDS 23280 - 24155 1360 ## COG1940 Transcriptional regulator/sugar kinase + Term 24162 - 24206 11.7 - Term 24150 - 24194 12.5 26 19 Tu 1 . - CDS 24203 - 25414 991 ## COG0477 Permeases of the major facilitator superfamily - Prom 25536 - 25595 6.5 - Term 25579 - 25622 9.3 27 20 Op 1 . - CDS 25642 - 26124 558 ## COG2190 Phosphotransferase system IIA components 28 20 Op 2 . - CDS 26135 - 26626 333 ## LCRIS_00608 hypothetical protein 29 20 Op 3 3/0.000 - CDS 26679 - 27401 796 ## COG1737 Transcriptional regulators - Prom 27465 - 27524 4.0 30 20 Op 4 2/0.222 - CDS 27534 - 29405 2103 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Term 29418 - 29448 1.2 31 20 Op 5 . - CDS 29482 - 30825 1782 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases - Prom 30876 - 30935 8.4 - Term 30991 - 31042 14.1 32 21 Op 1 . - CDS 31066 - 31218 111 ## gi|238854363|ref|ZP_04644705.1| alpha/beta superfamily hydrolase 33 21 Op 2 . - CDS 31244 - 32155 1048 ## COG1940 Transcriptional regulator/sugar kinase - Prom 32184 - 32243 8.1 Predicted protein(s) >gi|260196024|gb|ACQN01000043.1| GENE 1 1 - 781 643 260 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 6 259 46 297 298 119 30.0 5e-27 MQAKVLPLKTIRNPRDLGGYLTQDGHKVKMQRLLRTGRICNLSRHDQQYLINYGLRKVID LRSEKERKQDPDTLISGTKHFNISISPEDNTEAGTSFEDLFKKFDANPTAAFEHMRENYR LMITRPHSQRAFHRVLEEMANTPEGAIIFHCSEGKDRTGLTTFFILYILGVDLETIRQDY LFSNYMLNDYRARRDLEAKEKGSSLAFRANLRSLGSVADEYLDNAIITMCEEYGGIDSYI KKQLAVSDELIDLLRKLYLE >gi|260196024|gb|ACQN01000043.1| GENE 2 882 - 1916 958 344 aa, chain - ## HITS:1 COG:L143292 KEGG:ns NR:ns ## COG: L143292 COG3589 # Protein_GI_number: 15673111 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 339 1 342 353 248 40.0 9e-66 MLGFSINLGEPLTAQTHNYILKMRNVGFKGIFTSLQAPEQDSEQVLKGLTELKKWCHDLG LELVGDISKTGMQKLGLETDITSLKSLGLTGVRIDAGFDNEEIAKISKELRVALNASTIS EEDVICLRENQANFDHLEAWHNYYPRPNTGLDQGWMIERNKWLKNYGFKVVAFAPGDGIK RAPIFESLPTLEEHRNVSSFFASLDLFDMGLDHVYIGDCDLSEESFEQFSEYLDKKAILL HLTRKNSILVKHSWHQRADLSRDVVRLEEGRIRQLFSQVELKSGKRPKGTITSDNERYLR YEGELEITKKDLPEDERVGIVDKVADFDLPLLDIINSNQMIIFK >gi|260196024|gb|ACQN01000043.1| GENE 3 2032 - 2580 816 182 aa, chain - ## HITS:1 COG:SP1471 KEGG:ns NR:ns ## COG: SP1471 COG0431 # Protein_GI_number: 15901321 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 182 2 181 201 146 45.0 2e-35 MKLLAVVGTNADFSFNRFLAKYIAKRYGDKAEIEVAEINTLPLFNRESSGNKNVAEWREK IKTADGIILTTPEYDHAIPAALKSALEWLGSHAGADLMHMKPAMVVGTSYGMMGAARAQE EAREILLAPDMSANVLPGNEVLIGRAADNFDKATGDLTNQTYIDQLDTVMDNFIKFVAQN QK >gi|260196024|gb|ACQN01000043.1| GENE 4 2593 - 3129 469 178 aa, chain - ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 163 1 166 187 144 44.0 6e-35 MKILAIVGSNAENSYNRKLLLVIKKRFTKHDIELAEIKGLPLYKEGQDTPQVVSDLAEKI ETADLVLIGSPEQQHSVTSALKSALEWLSSNLHPFKGKPVFIVGTSPLAQGSGRSQTRLK NILAAPGFSCPVFNGDEFMLGLASQAFDEDGSIKDERTLEFLDHFFGEVEEWYEQITK >gi|260196024|gb|ACQN01000043.1| GENE 5 3228 - 3830 768 200 aa, chain - ## HITS:1 COG:FN1004 KEGG:ns NR:ns ## COG: FN1004 COG1309 # Protein_GI_number: 19704339 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 156 1 154 188 64 28.0 1e-10 MARKKEIRRQQILDVAYNLALSEGIESLTARNIAQAGDFSTQPIYLEFKNMEDLRTQILE IISVNLKTKILQKSYTGGALIDLDLSYINFAKEHIDLFRAMFVDGKLGSAIIADTLLNLG IEKFNEEYSEYDLSEKKIKQVVMANWISATGIAALIINQVATFSEEQIINVLKAQILDAI NNENLSEVENNRMFSTNDRD >gi|260196024|gb|ACQN01000043.1| GENE 6 3898 - 4107 322 69 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01861 NR:ns ## KEGG: LCRIS_01861 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 2 68 6 72 80 78 62.0 6e-14 MEDKRITLTTDYANSSINIDFSDNLTDEGERGYILSASFLSYAISEGLSKEEIVEMISNG YDQFTSENN >gi|260196024|gb|ACQN01000043.1| GENE 7 4189 - 5601 1567 470 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 467 3 473 474 288 36.0 1e-77 MITKHGRSACTSILIGKKASISGSVIIGRNEDCKTAWPKHLKFNPATICAHNHFSSNDNK FEMDLPDRSYAYSSTPEWTDKYGVFEEDGINEYHVAMSATESAYANGRVLAVDPFDTEKG ILEEAMVTCVLPYVKTAREGVERLGKIVTEHGAAEADGILFADPDEAWYLEIGSGHHYVA QRIPDDSYAVVSNQLAIQEVDFTDHLNFIFSPDLPNFVYQNKLWPKDKPFNFREIFGTQD DSDLHYNTPRVWAGQKLLTPSKKKEPQDFYLPFLEKPDRPITIQDAQRVLKDHYQNTPFD LTNKKNSSNATFRPISVATTQESHLLELNGESMTQWLCMGITSQGVYVPFYPQGTKTPAM WDKGTETYSSDSAYWVFKLASVLADRDWGKYGKDLSTTQDNTSKELMQIRHEYDQKLLTI SDREKEIELVDEANEKMANLAIKNYQTLIAQLVTKQTASSPLSFTMDPNL >gi|260196024|gb|ACQN01000043.1| GENE 8 5641 - 6318 233 225 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 202 1 199 223 94 30 8e-19 MMSTIELKNIKKIYGSGNAQTIALKGVDFEAEKGEVVLLEGPSGAGKSTLLTIMGSLQKA SSGTILFNGENITKFSDKQRDNLRLNKIGFVLQAYNLVPFLKVKEQFELVDRVKKAGNLS SDELTDLVKLLGIDQLLNKYPNELSGGQMQRVAIARALYANPQVVLADEPTASLDSDRVK EVGALFQKLAKEQGKAVILVTHDQRLEAYSDHTYDMLDGKLTKRK >gi|260196024|gb|ACQN01000043.1| GENE 9 6319 - 7377 1245 352 aa, chain - ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 351 2 357 357 223 38.0 5e-58 MYLAFKEIKKEKLRYGLIVFMIFLISYLIFILSGLAFGLASENTQAIYAWQTKKVILNQN SNVSLSQSLITKQDVPKKLSTNEALVGQTPLVIKNKKKSTVSAQFIGIKANQYIYKNLAI TAGRKAKNSNEVVVSQTLKNKGYKLGDKLTLNGSTDQYKIVGFAKDAMINIAPIIYGNLA TWRKLRSVNNEVVASGIISKSSNFKVNSKNLKVYELKTFLNKLPGYSAQNLTFGLMIGFL FIISLIIVAVFLYILTMQKLPNFAVMRAQGIPSKTLIGFTVSQSFILVLFASLLALILME LTVFALPAAVPMKFSPSIAIAGLLGMLIMGIIGSLIPVRSILKVDPTMAIGG >gi|260196024|gb|ACQN01000043.1| GENE 10 7380 - 7904 525 174 aa, chain - ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 72 1 72 189 65 47.0 3e-11 MVKSTFQNLNQEKKKRVTDALITEFSSYSLADAQVARIVKSSGIARGAFYKYFDDLTDAY EYVYQLAMKDIHAGLKPSKAFDVELLYKTTADFVGKSEKSPYLALIKLHLSKNEAMLTHD FKQKAVRLKDLDVKTWSAMVLSHETIKLVLFDPDHKNIYLERFKHSLKLLNEEG >gi|260196024|gb|ACQN01000043.1| GENE 11 8023 - 8622 725 199 aa, chain - ## HITS:1 COG:CAC1385 KEGG:ns NR:ns ## COG: CAC1385 COG0406 # Protein_GI_number: 15894664 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Clostridium acetobutylicum # 1 189 2 184 191 94 31.0 1e-19 MKLTFIRHGQTDLNKDNRIQGGEIDQPLNETGIKQATVAASHFNPEKYDLVFSSPLQRAK KTAEIFVKGKKEINFDERIKEMDFGEWDTLKVDDLIKKYPKGFNQARYVTNGYLRYAPSG ESFEDVARRGSEFIDELISKYPDKNILVVCHGTLIKTLVAHYFSNGNLEVFEQVDNCAIS EFEMTEKLAKVIRYNQILY >gi|260196024|gb|ACQN01000043.1| GENE 12 8697 - 9449 844 250 aa, chain + ## HITS:1 COG:CAC3665 KEGG:ns NR:ns ## COG: CAC3665 COG1073 # Protein_GI_number: 15896898 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 23 243 32 258 265 124 34.0 2e-28 MSIFTIQRDGLNLVCEREDPFGEKYDLAIIMHGFTANRNTALIKEIANKLRDENVASIRF DFNGHGDSDGAFENMTVWNEIEDANAILSYVKSDPHVNHIYLVGLSQGGVVASMLAGLYP DLIKKVVLLAPAACLKDDALKGNTQGVSYNPKKIPDSVPFRNKNLGGFYLRVAQNLPIYE IAQNYCGPVSLIHGTNDQVVPAKYVEKYQAIYQNSELHFINGADHRFSDTYQNIASDLTA DFLKPDFSVF >gi|260196024|gb|ACQN01000043.1| GENE 13 9436 - 9783 215 115 aa, chain - ## HITS:1 COG:STM0005 KEGG:ns NR:ns ## COG: STM0005 COG3022 # Protein_GI_number: 16763395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 107 143 253 257 80 42.0 8e-16 MYHFWDSLIHDKLFEDDDTVVNLASKEYARAVIPYLHEGEKFITVDFLEKRKDQWKMIGT HAKMSRGEMVRWIGENQIKTPEELQAFSDFGYKFDELTSSADKYIFKTQYDFKRH >gi|260196024|gb|ACQN01000043.1| GENE 14 9895 - 10197 372 100 aa, chain - ## HITS:1 COG:no KEGG:LBA1843 NR:ns ## KEGG: LBA1843 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 100 1 100 253 115 54.0 6e-25 MKTIISPAKKMVVNQESFLAKTKPDFLEQAKILADFLKRQEADRLKQIWEASDKIVQEGI SQLKTMDLENARTPAIVSYGGIQYQYMAPDLFTEPALIYI >gi|260196024|gb|ACQN01000043.1| GENE 15 10300 - 10962 777 220 aa, chain + ## HITS:1 COG:no KEGG:LBA1844 NR:ns ## KEGG: LBA1844 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 220 1 213 213 189 47.0 4e-47 MNPDYGIILNFKVNANANAQKIVRLARNIGARAISVEGANDLAPYKEACKDYTIELVNAH GIDLTSANAIDELINFKRNEQHAVFNVELDEIGDLLDEQKAALTLLNDWMHWFGHAYNES GKSTLKTADSNSFICENRHAKYQVYVFIKSPLPKTIKVEGFDHKPMRAEWIDERVELPFS FQNKEVTVELSPYPDGIDYKWRVLRIMKHRPEDDIKETQF >gi|260196024|gb|ACQN01000043.1| GENE 16 10998 - 13535 2638 845 aa, chain - ## HITS:1 COG:L102360 KEGG:ns NR:ns ## COG: L102360 COG0308 # Protein_GI_number: 15672287 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Lactococcus lactis # 4 841 3 842 846 832 50.0 0 MGKINRFYDTFHPNHYDLFINVNRADKKINGTSTIAGEALSKEISVHQKFMSISKVTQDG EAVPFEVDEKAEAIKITLAKAGNTTISIDYSAPLTDTMMGIYPSYYQLNGKKEEIIGTQF ETTFARQAFPCIDEPEAKATFSLALKFDEHEGETALANMPEIKCEDGVHYFEKTVKMSTY LVAFAFGDLQSKMTETKSGVKVGVFATKAHKAKELDFALDIAKRAIEFYEDFYQTPYPLP HSWQLALPDFSAGAMENWGLVTYREAYLLLDPDNTPLDMKKLVATVITHELAHQWFGDLV TMKWWDNLWLNESFANMMEYLSLDHLEPNWNVWEMFQSSEAPAALTRDATDGVQSVYVEV KDPAEIDTLFDGAIVYAKGSRMLVMVRALLGDKALQKGLKYYFDHHKFGNTTGDDLWNAL STATDLNIAEIMHSWLNQPGYPVVNAFVEDGHLKLAQKQFFVGEGEDKGRTWQIPLNANF EAPAIMTEKELDLGDYKTLREKAGHALRINVGNTTHCVVKYDETLMNDILAEVEDLDSIS KLQLLQDLRLLSEGRESSYAEVVPLLDKLKDSKSNLVNNAIYTTARKLRQFVTPDSDAEN YLKQFYNRLSEEQVKRLGWDVKPDESDEDKLTRPYVLSASLYGGNIDSVRAAHKLYQDHE DDLESLNADVRPYVLINEVKNCGSSALTDKLINLYQTTSDASFKSDLTAAITSSKSESEL EKVVSYFKNADIVKPQDLRGWFASVLNNKLGEQLAWDWIRNEWAWLDKTVGGDMEFTTFI TVIARNFKTAKRLEEFKAFFEPKLDQPMLTREIKMDTKVIETRVELVEAEKVKVNQAVKN LFIEE >gi|260196024|gb|ACQN01000043.1| GENE 17 13661 - 14875 1119 404 aa, chain + ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 125 402 207 465 466 117 32.0 4e-26 MTGKHSKNTADNWFKKNKILVSLFSAIVILSLFGGFIYHNHIEEQRQATLKYTSKHFNKN VKIFGVKVGGLTINQAVTKINKNAKTAATMTDGKITSMKLDGIQVTDKKTVTKYFNKQHT SLPSDKKWNFADNTLKEAKKKLSEFYNAKTTYKVGGKDFSLEAKNLFKTVEYYGGQFHFT DTSALSAKLSQINSEVSTLDKSYSFTTPNGKTITVTNKSYGWGINTKTAIPAIEKALSNG DTTIDGSNYIYGKGYSTYGTGYTTTNNGLGKNYVVVSIKEQKLWIIKNGVVAVTLNDVVT GTAQTSSGSSDATPTGVWYIEYKQSPSTLTGTNDDGSSYSSKVSYWMPFTLSGCGLHDAS WRTDWSKTAYLKGGSHGCVNIRPSEIKKVWDAVEMHEAVIVYDN >gi|260196024|gb|ACQN01000043.1| GENE 18 15040 - 15921 1024 293 aa, chain + ## HITS:1 COG:lin0491 KEGG:ns NR:ns ## COG: lin0491 COG0583 # Protein_GI_number: 16799566 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 293 1 294 297 192 38.0 7e-49 MNLRHLEFFVELAHTEHMAKAAENLGITQPSLSYAISSIEKELGVPLFEKDGRNIKLSKY GEIYLRYVKAGLADFSKGNTYISELVDTNSGTVRFGFSSAAREVAPVIVNNFKHENPEQH ISFYFEQDITSIIIKKLLDEKVDLAIVANPDDLEAVNLTHLFDQQLYLAVSVNSPLANQD KISVNDLASYPLITYPHVNCLRQNIDTFFERAGIEPNISMVLADTAPIMNFVNSDFGVAI VPKSELINQHKIKFLDIDSDAAINPVYVATKKDHFLSPATKRILAYIKEYYKK >gi|260196024|gb|ACQN01000043.1| GENE 19 15967 - 16725 706 252 aa, chain - ## HITS:1 COG:lin0494 KEGG:ns NR:ns ## COG: lin0494 COG0710 # Protein_GI_number: 16799569 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Listeria innocua # 1 244 1 243 252 216 47.0 3e-56 MATVKIRNVVLGEGLPKIAVPNVGRTREEIISAAKEIIQAKPDLMEWRIDYFEAGINNFD TLKMVAQELRKVMEEIPILITFRTKNEGGVLSLPEERYLSLLNQIIVNRLGDAVDIELFH DEDTVKRLVKVAHQYNVIVVMSNHDFDKVPSKDIIEFRLKKMAELGADIPKFACMPHSSM DVLTLLMATTVVNETISNPIITMAMGDLGKVSRIAGQVFGSSLSFGAVGQTSAPGQLTIS DLRNAEKYLELH >gi|260196024|gb|ACQN01000043.1| GENE 20 16734 - 17933 1025 399 aa, chain - ## HITS:1 COG:ECs2397 KEGG:ns NR:ns ## COG: ECs2397 COG0477 # Protein_GI_number: 15831651 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 5 392 1 389 404 317 48.0 2e-86 MGIVMKNKYTPTALALYFNYFVHGMGVIILSQNAANLAHQWGTTETGALAVVSSLGIGRI INLLASGVLSDKFGRKPFVQLGIVTYFIFFVGILMSPNTVIAYILGILAGMANSFLDTGT YPGLMEIYPNSKGTSNVVLKAFISAGQFFLPFIVSFLAAAHMWYGWSFLIPATILVLTFL YFMFGGAFPDSNSTNKTVEEKITDNNVKTNLWLDGTLFIIYGYISQATFYLVSQMLTQYG QKIGNLSQVTAHSLVSWYSLGSIICVLTTAVLGKKFSEIQFVPIYTLGAFISLALMWLYP TNASLMIILSILVGFFAAGGVMQLALTVMAEFFPAGKGTVTGFFYTAGSIASFTIPLAIN WIGNMRNVMLFDVIIALIGFIDTSMIAMRYKKMFGKLGK >gi|260196024|gb|ACQN01000043.1| GENE 21 17958 - 18881 1247 307 aa, chain - ## HITS:1 COG:lin0493 KEGG:ns NR:ns ## COG: lin0493 COG0169 # Protein_GI_number: 16799568 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Listeria innocua # 1 299 1 291 291 333 54.0 3e-91 MTNKITGVNGPINGWLDGHTYLIGLMAYPIRHSMSPTMHNNAFAKLGLNFTYLCFEIDNK KLPKAVEAIRTLDMRGSNVSMPNKKEVIKYLDKLSPASEMCDAVNTIVNDNGVLTGYTTD GIGFMKSLEDEGIDIRGKKMCLAGAGGAATPIAVQAALDGVSEIEIFNLNDDKWSQAEKN VKTINEKTNCKASLHHLEDKDDFKRAISECDIYCDATGVGMKPLEDMTLVEDPSWFHEDM TVFDTVYAPRTTKLMKVAQKAGVKHVLNGIGMMIEQGAAAFKLWTGEDMPTDYIRQVIFE NDAKDNN >gi|260196024|gb|ACQN01000043.1| GENE 22 19032 - 19952 200 306 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 1 248 1 242 305 81 26 6e-15 MNLRHLEFFVELAHTEHMARAAESLGISQPSLSYAINSIEDELGVPLFEKEGRNIKLTNY GRIYLKHVEASLDALKKGNEYVAELHDINQGHIHLGFTYTMGQDLVPELVSTFKNNPTAK KITFSYSQDITDKLIEELLEEKLDLVFASKATTPALVAQVNQFHLVNQELLAAVPFNHPL AKKDEVTLSELAKYPMVLYQRNSGLGIFLKKIFDQANIKPKVAVEVQEDHSVLGFVRYNF GVAIVPHMSQLSSGIVKLLPIKDKAVVHPIYAITKANHFLPPVVQRFQSYAEKYCRNSFN EKNTMI >gi|260196024|gb|ACQN01000043.1| GENE 23 20000 - 21709 1749 569 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 67 563 1 477 484 132 27.0 2e-30 MTKQTLQAEANGRNGKIKFDINIDNNEIKDIKVTKSSETPAIFNQVFDKLKNSIIEEQSF DVDAVSGATIMTSALLDSGKNALNQAGVTPVAKESDKTHREVNLDVDVAVIGSGAAGLIA ACRALSMGKNVVVLEKNGYLGGATILNGSNVVATGSNLAQQLFGTEAQEDSSKRLFDDIT RECRGTNYPELSKILVNNIGKAVDFIKEFANLTYQKAETQTIEHSVNRQVEMPSESSYEL IKKIATAFEEKGGKILLDARVEKINSEDGVPVSLVAEGKHQTTNVKFKSLILAAGGWGAK DFKEKRTSIPYYGPMTSTGDYFFFNKGLNLASRNLDWYKVYPHGLEVEPGIAKLTTYSTK EASDMGAIFINRAGNRIVNESDPYTHFRDAIAAQKDQIAFVLMDQRIWNRFYELMLKYGF TADEISHYFALDGKQSPILVKGNLETVANKAGINFENLQHTLSNYQNYAKNGKDPEFGRE AKFMHEYSGDTYYVIEQKLRFCTTLGGYETNSQMQLLNSDMKPVANYYAAGEIIGGANGH DSMPSMMNSWSYASGFLAGTNASDNCNNR >gi|260196024|gb|ACQN01000043.1| GENE 24 21840 - 22955 956 371 aa, chain - ## HITS:1 COG:lin2339 KEGG:ns NR:ns ## COG: lin2339 COG0477 # Protein_GI_number: 16801402 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 3 366 21 391 402 206 35.0 5e-53 MMGLRLSMVAQYKPEFATIWHTDVSGVLQVVAAIGLGGIISILITGPVSDYFGRKFCAVI GHLIWASYFIGLLYAPNLTVAYIIATTSGIGQSFVNSSNFPSLMEIFPKNASIAGIMTKF AINIGQFALPIFAFVVSLLGANYRIVFWGTGLVYLALAFLLICLPFPQHHSKKQLVKQSF AFTDRLPISVIALALIGYTSTAVFLLWVNTYQELAKSYGVSNPIYLQTIYAFGASIAVVF NSFIIKKGIKEVDLLLYYPLFTALSLILTVLIKASWIVSFANLAVGFFAAGGLYQLALTV LGNSYPTIKATAQSWAAFFSALSNLTIFSIASWITGFSGANSAKYIVIMNIFLSLLGSVL ALIVKVCNKKG >gi|260196024|gb|ACQN01000043.1| GENE 25 23280 - 24155 1360 291 aa, chain + ## HITS:1 COG:SP1721 KEGG:ns NR:ns ## COG: SP1721 COG1940 # Protein_GI_number: 15901554 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 5 291 3 295 295 260 47.0 2e-69 MTNAKTVGSIEAGGTKFIVAVQDIESGKIIATDRIPTTSREETFKACAEFFKKNPVNALG IATFGPVDINPDSRTYGYILDTPKPGWSGANFKGFFEKELNIPVYITTDVNGSCYGEYIA RGADNTKTYLYVTIGTGIGGGIIQEGKFIGRNYHPEMGHMMVVRAEGDDYKGGCPFHGAC VEGMAAGPSLKGRTGIPGEDLPRDHKAFSFLQYYVAQMLYNAYMTTRPDVMVVGGSVLNE DDLVQIRKYFDDLNNNYVATPDLDELIVRPAVANNGSATLGDFELAKKLLK >gi|260196024|gb|ACQN01000043.1| GENE 26 24203 - 25414 991 403 aa, chain - ## HITS:1 COG:SP1587 KEGG:ns NR:ns ## COG: SP1587 COG0477 # Protein_GI_number: 15901429 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 398 1 400 408 397 57.0 1e-110 MKRNRYVVALAGVVLHLMIGSVYAWSVFTKPIAAETGWSIKAVTFAFSLAIFFLGMSAAF MGRLVEKYGPTVTGTVSAILFGLGVMLTGVAIGAHQLWLLYLCYGVIGGVGLGAGYVTPV STIIKWFPDKRGLATGLAIMGFGFAALLTSTVANHLLSLKSVGLEKTFYILGAVYLVVML LAAQLIKRPRPGEVPTQTNLPKNSTGIQMRANDALKTPAFYCLWFMFFINITTGIGLVSM ASPMAQGMVNMNAAKAAALVGIIGLFNGFGRLIWASLSDYIGRPLTYTLIFVVDILCLGT ILYLRQELLFSMALCLLLSCYGAGFSVIPAYLGDVFGTRELGALHGYTLTAWAVAGMVGP TIITYTSHGSDYSKTLLIFIIIDVISLLVSFFVKTQIKHMKKA >gi|260196024|gb|ACQN01000043.1| GENE 27 25642 - 26124 558 160 aa, chain - ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 12 158 4 150 151 134 48.0 7e-32 MFGLFKRNSKLKVVSPVKGDLIQITDVNDDVFSTKMLGDGFAVEPFDGTIVAPLSGKITT LFPTKHALGITTDKGLEVLIHMGIDTVELKGTPFDVFVKMNQEVKAGDKLAQINLDKIKQ AGLADTIIVVYTNMDLLKSVSAVDPRPLSAGDVVQEIEYK >gi|260196024|gb|ACQN01000043.1| GENE 28 26135 - 26626 333 163 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00608 NR:ns ## KEGG: LCRIS_00608 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 2 161 4 165 165 97 38.0 1e-19 MISHLNFSSFLDRIVQNLKLTPKKLLKWYSYVLIFVPLACAALVGLHLVTSATTFSNLLK NQAGLAVGVIIALCDLIIGYFCLLNLEIFYKRKTYRVFMVTQVITQALVGNFMCVIMAIL GIYLSQELPNEKQINLKAKLVINLGTALLLLSFVLLVIIEFKK >gi|260196024|gb|ACQN01000043.1| GENE 29 26679 - 27401 796 240 aa, chain - ## HITS:1 COG:BS_yfiA KEGG:ns NR:ns ## COG: BS_yfiA COG1737 # Protein_GI_number: 16077886 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 215 1 211 254 71 24.0 1e-12 MNLQTRIYEKQGDLSGSEKEIIQGLLSSAKENSQLSLKDLSKKLYVSESAIFRLCKKLGL SGYSELKFELSAVSSIKNHPNNNFVKEMADLTTNTIKQFEARNLTNFYIDVQTAKTIYLY STGWQQELLASYISKELFLFGKQTVLLPSALDELKMRGQFFNKGDMLWTISYSGNNSSIV NELKKISLVGDKIKLVSLTKMGSNDLATISDYSFFFQTIDFSYKNNGGVAPAPVSLQHIF >gi|260196024|gb|ACQN01000043.1| GENE 30 27534 - 29405 2103 623 aa, chain - ## HITS:1 COG:BS_glvC_1 KEGG:ns NR:ns ## COG: BS_glvC_1 COG1263 # Protein_GI_number: 16077887 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus subtilis # 1 447 1 444 452 502 55.0 1e-142 MMQKLQRFGAAMFVPVLLFSFAGIVVALCSLFTNPLIFGSLAKEGTFWNGIWNVVANGGW TVFNQVNLLFVVGLPIGLAHAAKGRAAMESLVIYLTFNYFVAGFLQYWGPFFGVNNYAKD LVANSTNGGLTMIAGIKTLNTSMVGALLVAGIVIYLHNHFFDKKLPDWLATFQGSTYVVM LGFFVMIPFAFLTCLVWPKIQLGITSMQTFIVHSGLVGVWIYTFLNRILIPTGLHHLVYI PFQFGPAVVEGGLQPYWLKHLAEFAQSSKPLSVLAPELGFQLYGNEKVFLVPAICYAFYA TAKKSKKKQTSALLIPAALTSVFAGITEPVDFTYLFAAPVLWVIYSLLSATMNTTMCAFG VVGNMTDGAIGIAAQNWIPLWPHHWQTYIIQFVIGFIFAIIVFFVFKYMILKFNYITPGR EADDEDVKLLSKAEYKAKKAAEKAGSANANDPYIARASAYLELLGGPSNIEDLTSCATRL RVTVVDTNKVASDSAFKQNKAVSVVHHGKALQVIVGLDVAQVLERMQAMMQEQGHDNVAS TEVDPTLEKATGFIDLLGGQSNIEKLMSCATRLRVTVVDPSLVADEVAFKQVGAYNLEIK DKEVDIAVGLETDDIIAKMKEIM >gi|260196024|gb|ACQN01000043.1| GENE 31 29482 - 30825 1782 447 aa, chain - ## HITS:1 COG:CAC0533 KEGG:ns NR:ns ## COG: CAC0533 COG1486 # Protein_GI_number: 15893823 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Clostridium acetobutylicum # 6 446 2 440 441 549 56.0 1e-156 MVKDDRKFSVVIAGGGSTFTPGFILRLINQQDKFPLRQIKFYDIDAERQKKIGDACAIII KERAPQIKFSYTTDPEEAFTDVDFVFGSIRVGKYEMRSHDEKIPLKYGVNGQETTGPGGM AYGLRSIPAIIQIIDYMEKYSPNAWMINYSNTIAIVSEACRRFRPKSKVINICDMPIDIM TRMARICGLKDYHDLDFIYYGLNHFGWWKEVRNYKTGEDLMPKLKKYVRENGYYVGGDFD KDTEASWVETFKKAKDCYALEPDTLPNTYMQYYYYPQYEVAHADPHHTRTDEILEYRQKI VFGECKRIVEAGTAKNNIWDKNAIHSEYIVDICHAIAYNTHEKFLANIPNNGAISNLPDD IIVEVPCLFGADGVQPIACGEAGRFQRGMIMEQVTCEQLVVDAYEQHSYEKMWQAFALNK TVPDALVAKKILDDMIPVNAPYWPELK >gi|260196024|gb|ACQN01000043.1| GENE 32 31066 - 31218 111 50 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854363|ref|ZP_04644705.1| ## NR: gi|238854363|ref|ZP_04644705.1| alpha/beta superfamily hydrolase [Lactobacillus jensenii 269-3] # 3 50 205 252 252 99 95.0 5e-20 MNVNNYASIRYHAIWPQSEIHLIAESDHGLHQNRQEVYNRVIKVLCNDLD >gi|260196024|gb|ACQN01000043.1| GENE 33 31244 - 32155 1048 303 aa, chain - ## HITS:1 COG:lin0770 KEGG:ns NR:ns ## COG: lin0770 COG1940 # Protein_GI_number: 16799844 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Listeria innocua # 5 290 4 282 288 171 34.0 1e-42 MTQYLAFDIGGTNLKYALLNNAGEIIEHDKVPTPTDNLADFLKAVYKIADQYQGQFEGIA FSAPGKVDTKANTVYFGGALPYLDGVNFQRLVGDKYHVPVGVENDGKAAALAELWLGELK GVNNGAAVVLGTGIGGGIILDGRIWRGSHFQAGELSFMQTEGDKSGFERFGCTYGSAVKM IESVNKLIGNSDLKDGYAAFDAINNGNDQALKILERECKEVATIIFNIQSVVDLDKFVIG GGISAQPKVVEAINKQYRLITNEVPFIAKMLTRPTIVRAKFMNEANIYGALYALLLKLNG EDE Prediction of potential genes in microbial genomes Time: Wed May 25 14:15:33 2011 Seq name: gi|260196023|gb|ACQN01000044.1| Lactobacillus jensenii 115-3-CHN cont1.44, whole genome shotgun sequence Length of sequence - 33673 bp Number of predicted genes - 30, with homology - 29 Number of transcription units - 18, operones - 8 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 28 - 1227 1226 ## COG0477 Permeases of the major facilitator superfamily - Prom 1251 - 1310 5.6 + Prom 1345 - 1404 3.8 2 2 Op 1 . + CDS 1430 - 2314 1091 ## COG0657 Esterase/lipase 3 2 Op 2 . + CDS 2344 - 3204 656 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 3250 - 3304 15.6 + Prom 4372 - 4431 6.8 4 3 Tu 1 . + CDS 4485 - 5051 347 ## gi|256851807|ref|ZP_05557195.1| predicted protein + Term 5205 - 5242 6.1 - Term 5184 - 5235 7.1 5 4 Op 1 8/0.000 - CDS 5241 - 6728 1951 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 6 4 Op 2 7/0.000 - CDS 6739 - 8706 2270 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 8805 - 8864 4.6 7 4 Op 3 . - CDS 8905 - 9738 922 ## COG3711 Transcriptional antiterminator 8 4 Op 4 . - CDS 9738 - 10898 1364 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase - Prom 11100 - 11159 5.4 + Prom 10809 - 10868 7.1 9 5 Tu 1 . + CDS 11043 - 14021 2826 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases - Term 13983 - 14042 -0.8 10 6 Op 1 3/0.000 - CDS 14072 - 14827 964 ## COG5438 Predicted multitransmembrane protein 11 6 Op 2 . - CDS 14829 - 15929 869 ## COG5438 Predicted multitransmembrane protein - Term 15953 - 15992 2.3 12 7 Op 1 . - CDS 16004 - 16723 965 ## lhv_0144 hypothetical protein 13 7 Op 2 . - CDS 16735 - 17820 1429 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes - Prom 17941 - 18000 9.3 + Prom 17943 - 18002 7.5 14 8 Tu 1 . + CDS 18025 - 19524 1568 ## LJ0107 hypothetical protein + Term 19551 - 19606 9.5 15 9 Op 1 . - CDS 19582 - 19854 261 ## gi|297205418|ref|ZP_06922814.1| hypothetical protein HMPREF0526_10446 16 9 Op 2 . - CDS 19878 - 20711 992 ## LCRIS_00124 hypothetical protein 17 9 Op 3 . - CDS 20722 - 21417 679 ## Ldb0181 TetR family transcriptional regulator - Prom 21445 - 21504 7.3 - Term 21476 - 21521 10.3 18 10 Tu 1 . - CDS 21546 - 22532 1251 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 22662 - 22721 6.7 + Prom 22520 - 22579 8.0 19 11 Tu 1 . + CDS 22674 - 23048 412 ## COG3759 Predicted membrane protein + Term 23052 - 23085 4.0 - Term 23040 - 23073 4.0 20 12 Op 1 1/0.000 - CDS 23077 - 23733 811 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 21 12 Op 2 . - CDS 23752 - 24564 698 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 24693 - 24752 6.7 + Prom 24538 - 24597 6.5 22 13 Tu 1 . + CDS 24730 - 25689 1055 ## COG4086 Predicted secreted protein + Term 25698 - 25759 5.7 - Term 25696 - 25729 3.1 23 14 Op 1 . - CDS 25742 - 26506 665 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance 24 14 Op 2 . - CDS 26535 - 27302 744 ## COG0328 Ribonuclease HI - Prom 27537 - 27596 10.0 + Prom 27292 - 27351 7.6 25 15 Op 1 . + CDS 27378 - 28301 762 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold 26 15 Op 2 . + CDS 28339 - 29043 859 ## COG2738 Predicted Zn-dependent protease 27 15 Op 3 . + CDS 29066 - 30523 880 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 30590 - 30632 0.4 - Term 30516 - 30562 6.2 28 16 Tu 1 . - CDS 30628 - 30735 64 ## - Prom 30847 - 30906 7.9 + Prom 30749 - 30808 7.5 29 17 Tu 1 . + CDS 30851 - 31402 332 ## gi|256851784|ref|ZP_05557172.1| predicted protein - Term 31279 - 31313 -0.8 30 18 Tu 1 . - CDS 31427 - 33556 2118 ## COG3409 Putative peptidoglycan-binding domain-containing protein - Prom 33591 - 33650 7.3 Predicted protein(s) >gi|260196023|gb|ACQN01000044.1| GENE 1 28 - 1227 1226 399 aa, chain - ## HITS:1 COG:SP1600 KEGG:ns NR:ns ## COG: SP1600 COG0477 # Protein_GI_number: 15901440 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 11 368 7 364 383 111 23.0 3e-24 MKYNKNSLIFKIALLSISTLLMIAPAVSSALPLLYPAFSGVSKASVEGLITLPNIGIILG LILSPVLIRFLGQKKTVLSGLVLALISGTFPMYASSFMMIAISRLLLGMGIGLFNSLAVS LIPQFYNDDEEETASMLGFQNVMGALGTALVSFILSWLVTINWHMAFGIYLLIIPVFILF ALFIPNDKANKTITKKAAPKNREKINSKLVVIWTVFFILFIFYMPLSYKLPLLVTSEKLG SMSQYAALTGITGLCGIPLGASFGILFKKLHDKIFPIGFLITAIGFLLFGFATNLVMIFA GNIVLGFGAALAVPYLYNWLSWAAPHGSVNLATTIALVLINIACSVSPYILNSLSGVLGN STPRFAMFICAAAFILLTVYGLGHYLRVHRINIKTKHQF >gi|260196023|gb|ACQN01000044.1| GENE 2 1430 - 2314 1091 294 aa, chain + ## HITS:1 COG:DR0821_2 KEGG:ns NR:ns ## COG: DR0821_2 COG0657 # Protein_GI_number: 15805847 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Deinococcus radiodurans # 41 145 1 103 242 85 40.0 1e-16 MADLPTSVDELRAIFKKGDDARDAGLPTNIPEVERIDNLSYGPDEKWNLLDIYLPKNRTG KVPTIISIHGGGWVYGTKETYQFYGMSLAKMGFGFVNFNYHLGPDVVFPGILDDVQLLME WIENHGAEYDLDLKNIFLLGDSAGGQMTEQYLAISTNDDFRKLFGYQPLSFKFNAAALNC GAYFMLDKEQTQGAVAAYFAPEAIKDKKELLNTEQYLTQNLPPLFIMTANEDFLHDNAIR LDGFLRAKGIKHELHIYGTPDKPRQHVFHCNVRDEIGQQCNKDEIDFFKQYIVK >gi|260196023|gb|ACQN01000044.1| GENE 3 2344 - 3204 656 286 aa, chain + ## HITS:1 COG:L0229 KEGG:ns NR:ns ## COG: L0229 COG2207 # Protein_GI_number: 15673492 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Lactococcus lactis # 31 282 27 271 327 73 26.0 3e-13 MPMYEHEIVKPVGQLSIWYHIFDDNQAWNAYIPAHWHRGIELSYIERGSIDDFRIGDAHF SSSSGKILVVNTQEIHSIKTQVKQNDLALSIIYPYSYIEGLFPKINNYRIEINHPENFTE LQKLAYLNLKSQLIQFIATAQLNSNDRNIRLSIISLEILDNLLNNFVQKRKQLPAKKEVI TQRLQEIVEYITTNLQQDLSLEIIANECHISREYLARFFKKNMAMTVAEYIRYRRAISAR KDLLSKNATLTEIAIDNGFSGIRSMNRALQEFYHEDAKEIRKREQK >gi|260196023|gb|ACQN01000044.1| GENE 4 4485 - 5051 347 188 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851807|ref|ZP_05557195.1| ## NR: gi|256851807|ref|ZP_05557195.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 188 1 188 188 281 100.0 1e-74 MVISEFTLKEILQVIWANTFHINTKKSKILQIILGILILLILIVFFLMYYNSREFVTLNK FSRIVFALLYTLYPLPMALFTVFLILSLIYKRKQIIFFEKTFSDNLSKIDTSTFRNSNIK IPYIKHAQENFIKAQFYDVGGIYNDIILVKKISKIPHLSSKNILYIKKKDLTPEQLSILK RHVKLWIG >gi|260196023|gb|ACQN01000044.1| GENE 5 5241 - 6728 1951 495 aa, chain - ## HITS:1 COG:CAC1405 KEGG:ns NR:ns ## COG: CAC1405 COG2723 # Protein_GI_number: 15894684 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 11 494 7 472 473 522 53.0 1e-148 MSTKTSFPKDFLWGGATAANQLEGGYDEGGKGLSVTDITTAGSLNKPRMLTYMLNGKAGE TPAMPGAGLPQGAKGAILPGEYYPNHVAIDFYHHYKEDIKLFAEMGFKTFRMSIAWTRIF PKGDEKEPNQAGLDFYRKVFEELKKYNIEPLVTISHYEDPLYLSEKYNDWQDRAMIDEYV KYAKVLFKEYKGLVKYWLTFNEINCSLLMLNMFGQKINDDAVYQHAYQKLHYQFVASARA VKAAHEIDSDYVVGNMICGIVNYPLTPDPKDILANRYAWEQNIFYCGDVQALGEYPSYSK RLWNEHNVHLDITDQDLADLKAGKVDMYTFSYYMSNVITTHETKDKVGGNFAAGAKNPYL KYSEWGWATDPMGLEYYLEVMNDRYHLPQMVVENGLGAVDKLTADNEVHDDYRIDYLKQH IQAMKAAIDNGVDLIGYTTWGCIDLVSAGTGQMSKRYGFIYVDRDDEGNGSLKRYKKDSF YWYKKVIASNGEDLS >gi|260196023|gb|ACQN01000044.1| GENE 6 6739 - 8706 2270 655 aa, chain - ## HITS:1 COG:lin0026_2 KEGG:ns NR:ns ## COG: lin0026_2 COG1263 # Protein_GI_number: 16799105 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 89 475 4 389 399 378 53.0 1e-104 MAYEDLSKKIIAGVGGKDNVVSVVHCTTRLRFKLKDEKKAHDDELKNTDGVVTVVKSAGQ YQVVIGNEVADVYDTLVKVGGFSDGGQVDDDYVDTSNMSIADKFIDIVSGIFTPFLGALA SAGMIKGIVAACASLGLLSKTSGEYQILYAIGDAFFYFLPILIAVNAAKKFKVEIFTAMG IAATMVYPAIVAISSSKTTLMTVFKGTFLQSDIHTTFFGIPVIMMNYSSTVIPIILAVWF ASYVQKWVKSWVPAVVRTFLVPFFTLLIVVPLTFLVIGPIATWFGNLLSLITVSAYHISP ILAGILMGAFWQVFVIFGVHWGFVAVFFANLAANGFDQILDLSLAASFAPIGVVLAILFQ TKNEKTKAIAFPAFISGIFGVTEPAIYGVTLPRKKPFIISCIASALATIIIALGNVKLYM MGGMGIFVIPAAINPKTGINSSLYYLIAAMVVAFILGFVLQMLFGKDAVDAQDQEHIAQD VQTAANEATEIKKNAAIAKTNSDYNKPTTLVSPLNGELIPLSEVKDEVFSTKAMGDGAAI RPSEGILRAPADGHVVLVFPTGHAIGMHTDDGAEVLMHIGMDTVNLNGKGFETLVKKDQV VKAGEPLVKFDIEAIKKAGYDVTTPIVITNTKNYHKISLTKQGVVHIGDNVLDLD >gi|260196023|gb|ACQN01000044.1| GENE 7 8905 - 9738 922 277 aa, chain - ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 277 1 277 285 142 30.0 5e-34 MIFEKSYNNSAALVKDEAGVEWIVIGKGIGFGKKAGDIIEESKIERRFKNTDQDTTLKTV TSLSSLALSLTNKMVELSQIKIGIKFDNYAYTSLADHVDFMLTRNKENMILDNQMMQWEV VKLYPKEVAVARELVAMVEKEAKVTLPESEVVFLTYHLVNVGFDKETVQETMELSKLLDG ILRIVSLETGKSLDRTSFNYSRFVTHLRALLIQIIKKQDRKNDGLDPVFGQLMKQKYPET SKVVEKIAYFIKEKTGYQLGEDDEVYLILHVWRVSNR >gi|260196023|gb|ACQN01000044.1| GENE 8 9738 - 10898 1364 386 aa, chain - ## HITS:1 COG:SP2056 KEGG:ns NR:ns ## COG: SP2056 COG1820 # Protein_GI_number: 15901876 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pneumoniae TIGR4 # 1 383 1 382 383 375 50.0 1e-104 MTYYIHAAKFFLKNKTELGGYLEITDDGKFGFYYPENEKPNGEIKEYPDKAVAPGYVDTH IHGLLNEDVMKSDWQGINKISEGLLAAGVTSWLPTTITASDETLTNICKMFADHKDQETG AKIQGIHFEGPFFTPEHGGAENPKYMVDPDIKLFDGWRKASDNMLIKISMAPERKGSCEF IREAVKEGVTVSLGHSSSNFEDANKAINAGASMFTHTYNGMNYLSQHEPNIIGAAFASRL TDCELIADGHHVEIPALRALIQAKGCEHICLITDCMQAGMMPDGNYMLGELPVYVKDGMA RLVNGNNLAGSILLLKDAVKNLVDWDIVSREDAVMMASYVPAKSSKILDKCGVIAPDRAA DFLILNNDMTLVETYLDGISRYKVEK >gi|260196023|gb|ACQN01000044.1| GENE 9 11043 - 14021 2826 992 aa, chain + ## HITS:1 COG:alr4773 KEGG:ns NR:ns ## COG: alr4773 COG1501 # Protein_GI_number: 17232265 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Nostoc sp. PCC 7120 # 77 606 83 678 779 119 24.0 4e-26 MAQTIQGRHQLGALVGAQKTENFYELHYSSGETARLYILSDGIFRFYLDPKGLFETNALD LNLSSFDNSYHEKSNAKATSEAFIIQTGSIKLVFGQKPATLTIFDEQVHRNRLSQTSPLE IGDGASIEFLKQNQNEYYYGGGLQGGHFSHKGKKIQIKDLKVAGNGGVINPIPFFWSNAG FGELRNTNAIGTYDFGSKNSSNCLLSHACEEFDTFYLIGNSPQSILQKLYQLTGKPFNLP KYALGLGYLGNFLDFTWKKSDNTNRTATKFEDGGYYEKTTNPEDIATKASLNGEENAIFS ARAMIDRYQKMKFPLSYFIPDFGSKTPAKLDELQQFNEYALSQGVMPGTAHVETLLANTQ LAYTDKQNEAKTYSALANSLKKQRPFVLTGNGNAKSLHTSALAFGEDGGEWDALKDQIAS LLGLSLSGQPISGCAVDGIRGGGNATVSVRDFEWKSFTPLLFNMDGQGTTPKLPFVYNNK ISKINRAYLALRKQFSSYLYTLVKKAQAGDLIMRPLFMEFPHEKTNYSDEWSSEFMLGKD LLIAPISDGREDEKGHAIKDRLYLPNHRTIWIDLFTGKKYPGGRVYNNLSFPLWHLPVFI RSGAILSQGNRIFTIYPQGKTVTEVVNDNNLSESETYTTTITSNLNDDRLHLSFAPVENL HEDAAKDQATYLNILIDHYPGNVSLKINDEPVRLNESGSFNAFLTAKEGYYFNTNFIAAP AFSDFTKQRQTALQIKLAKRDITDTKIDIFIDNSHYVKANEAHAIIDSALRAPGKPSINP DKTTAHSLTAIWPNDAQVQIEVNDLIYDGISGKNFTFNNLKSETLYKMRLRYLSHNKVSE WSDYFGGRTKPSQYKFAVKNVQMHSSMLSQEGHDVALATDMLLASEWRTADKMTNDGLTL TFNFAKEEELSRMVYLPRTVDQVGRITKASLAISKDGIHFELYRNEINWPNDPKNKVVGL RDVKAKAIQMHITESSDGLIAAKQFYFFKPKK >gi|260196023|gb|ACQN01000044.1| GENE 10 14072 - 14827 964 251 aa, chain - ## HITS:1 COG:L17781 KEGG:ns NR:ns ## COG: L17781 COG5438 # Protein_GI_number: 15672790 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 21 249 21 249 253 115 30.0 7e-26 MTTLTALVLLLFALMVLIGGKTGFNSFLSVMVNGILLVLVALLISWGINILVLTLIFIPL KLAAIIFLGTHDMIVAKNSFYAAILVATATILIIICLQYFAQAAGFGDEAGEELVGLSPY PGLSYPEIAITVAIFSTLGAISEASVAMSSGILELKKHNPEITRIQLEKSGANIGKDVLG TSVNTILFGLFGSFLPLFIWYMRLNYPLGKILNDKLFVNEVLIMVYSIIGVALTIPLTSY LLAKKVSKEKA >gi|260196023|gb|ACQN01000044.1| GENE 11 14829 - 15929 869 366 aa, chain - ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 10 360 4 362 370 179 30.0 1e-44 MMWKKQITKKNLFTLFVLFLGLIITSWVYFKPSSYADTAIIVNKNLNDKVTDKTEDEYKN YDEKRVQTLKLKVISGKYQGKIYTVKNHYVKSQLETQAYRSGERVLVSFNKGQISLLSPK RDWILALATTIVLTLLLIIAGKNTFWLVLSLVLSWIIFYFIIKFDIQENGTEIFAIYGLG VVLFAFVSLLIVQGFNKKMLATYFATLVGVFVSFGICYLIMKLTGEAGMKYETVDYATQS PRSLFLAQALLGVLGAVMDEATDIVSSLYELTQHKKDLTAKQLLLSGRTMGQEIMGPLIN VLVLIFIAEALPMTILYLRDNNTLAFSFEFTLSLGAIQSLMSAIGICLTVIFASLTSLVF LKKRGE >gi|260196023|gb|ACQN01000044.1| GENE 12 16004 - 16723 965 239 aa, chain - ## HITS:1 COG:no KEGG:lhv_0144 NR:ns ## KEGG: lhv_0144 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 6 238 9 244 246 188 55.0 2e-46 MSLNEKELVNPSTAAAELKISVATLRKYSLIVEKTTGDSEYYARTSQRARLYSAKNIEDL KAFHKLAKQSGLTLSDAAQQIFAVSDKKVEDQKKADKKIEEQANALMDSKQVVKLLSALQ QTIVNQNQAIADLQKQVAEVQKQNAALIDSQKQLAAPQATADLPEMDDDFFDEEIDEKTP EQKRSEVAKDMSKSEDEVRGAILKKAQENAAKRAKENVHRTLADMQLPKKKHWWERFLG >gi|260196023|gb|ACQN01000044.1| GENE 13 16735 - 17820 1429 361 aa, chain - ## HITS:1 COG:STM0380 KEGG:ns NR:ns ## COG: STM0380 COG1181 # Protein_GI_number: 16763760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Salmonella typhimurium LT2 # 4 356 3 360 364 310 45.0 4e-84 MTDKTRVGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVW DDPTYTIKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDD VLAAAVTMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYNYVSKKLGTDLFVKP SNQGSSVGISHVKSEADYLPALAEAFKYDDKVLVEEAIDGTEVETAVLGNDDIIVSGVGQ IINAKGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSML RTSDHEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIELAVERHNHKKTLLHKP E >gi|260196023|gb|ACQN01000044.1| GENE 14 18025 - 19524 1568 499 aa, chain + ## HITS:1 COG:no KEGG:LJ0107 NR:ns ## KEGG: LJ0107 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 492 1 506 508 469 54.0 1e-130 MNFKRKLATISASIMLLAPTFTTTIATPIASAATFTSSELNTIRSFQNRYASLDQTPYSK SNLYTITPNLTEPFSAGQISQNYIDSQLAWINYYRALFGLPSVTASKTENQNAQIAAAVM AAIGANPFQNQHGLPNESKPSYISESDWDTAVDLTKNSNLNFNILNQSAGDVITDFLTDR NNLTGGDTGHRAWILSPWLYTTGIGAAYGANGYRYSVQRVINLSDVMKTAAKSTITYPSE GVFPIELLSGQNIYCSFYLANEQIKSTPTITVTDLDTGQKVTATDVHNYSSSFYGNFSTN ITYKPGNISLISGHQYQVNINGIYSYSFKLFNQVAANQPSLNTTTTKSSTNVQNQVEQIA NNQSSTPAEKDVKIKSALLLKAEEISDTLMKDRITNTAIFGRSYQDGKNFYNLGKNQWFR DFYRVSNPLISAGILDSDDNMLDKQIYTSPYANLQTKTYAYLKPQTSYAYGQSIIIGGIT WYYLGPNQWVQKIPSKNPA >gi|260196023|gb|ACQN01000044.1| GENE 15 19582 - 19854 261 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|297205418|ref|ZP_06922814.1| ## NR: gi|297205418|ref|ZP_06922814.1| hypothetical protein HMPREF0526_10446 [Lactobacillus jensenii JV-V16] # 1 90 17 106 106 135 100.0 1e-30 MLLFSILVLIILANSIRTKYSDNPTIKFLKKHRGLILTAYSVLVFSYFVLKNGFNVLTST YIFFILIGIFYLIHDRNKINERIVEQYKKR >gi|260196023|gb|ACQN01000044.1| GENE 16 19878 - 20711 992 277 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00124 NR:ns ## KEGG: LCRIS_00124 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 277 1 274 274 218 44.0 2e-55 MAETTRSEIRRLDAEQNRSYKRSFIATIFVVVSLILFSFTLMNPSFMKGITRTSNGQAVV DAQINAKFDRLAVLVNGQKNSSSNLLTADQTQVLSDELIDYTLGIHWFKTDNANLANKIY STLNKEINSNSATEAQNVLKSLKKQGDSSVYTIISAFELADVTQQANLVTMFLIINTVLV IVLILSLISTLMEMREKLRLKAIIHEITGAGMWTGALMIVIYVILAMIPLIFNVESISIL DFGYWLELASSVFLEYVMFGAIIFVINTIPWQLTSTK >gi|260196023|gb|ACQN01000044.1| GENE 17 20722 - 21417 679 231 aa, chain - ## HITS:1 COG:no KEGG:Ldb0181 NR:ns ## KEGG: Ldb0181 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: L.delbrueckii # Pathway: not_defined # 4 231 1 226 226 254 57.0 2e-66 MTIVARHKNMKRRRIILDNTFKLIREYGIDNVSLQMIAEKSGISKSLLQSYYPHKQKLTT DIMHNLFNTLWDEVYTNVVDQKQNLFTQVKAFCYIIGSLGIRDNGLDQVIRQAFSDNTTL DSWSQMLNSWIVERNLISEFTPDQIERIRSGISFIAAGGGRLYLKRKTHNLNPEEIADFM TSTLMGVFMNYDTSEIKEVLEEGHQVIRNADIGSIHFAIDHMFDEGKEIYS >gi|260196023|gb|ACQN01000044.1| GENE 18 21546 - 22532 1251 328 aa, chain - ## HITS:1 COG:lin0509 KEGG:ns NR:ns ## COG: lin0509 COG0462 # Protein_GI_number: 16799584 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Listeria innocua # 9 321 1 311 311 281 45.0 9e-76 MNKEELHQMLHPMKLIGLGGNKALNEKIANILHMPLLETTVHHFSDGEIAVNIAETVRGC DVFVIQSIQDPVNENFMELEIVCDALHRASAHRINCVVPYLAYSRSDTKSRSREPITAKL VANLLQLTGIDRLITLDLHASQIQGFYNIPVDHLHALPLLAQYFLDNGIATSDDDNVVIV SPDHSGTKLARNFATNFNAPIAIVDQRGAHYDDSVHDMIGDVKGKKCIIVDDLIDTGSRI ASSTHSVLAAGATKVYVAASHALLSHDAVDVLNKLPIEQIVVTDTIKHEKYPDRIVRVSV DQLLARGIDYVYNDRSIHQIFDEQNRIK >gi|260196023|gb|ACQN01000044.1| GENE 19 22674 - 23048 412 124 aa, chain + ## HITS:1 COG:AGl3168 KEGG:ns NR:ns ## COG: AGl3168 COG3759 # Protein_GI_number: 15891701 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 7 115 25 130 137 58 37.0 4e-09 MRTFSIVLLLIIAIEHLFIAFLEMTANPKKQAKAFGVDVEFLKQADARISMANQGIYNAM LAVIIILGQWVFTGTNTIYANLLFSSFVSVVGFFGGLTVNQKIYFVQMTPGLIALIISCM SLYM >gi|260196023|gb|ACQN01000044.1| GENE 20 23077 - 23733 811 218 aa, chain - ## HITS:1 COG:SMc04165 KEGG:ns NR:ns ## COG: SMc04165 COG0596 # Protein_GI_number: 15965747 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 2 178 27 226 287 85 29.0 7e-17 MKVTVNNVELYYQKLGKGEPLILLHGHHLDGGMFDKILAPLSLYYTVYVLDMRGHGLSEG DAAEHYQEEVSDLAAFIRKLDLKQPYIYGYDAGGVVTLMLASQYPNMLKKAIVAGVFVHG AGIKPYHYAVEGVKRFIKRDPDSQVELTETLIEPEKLRKIITPTLCVVGEKDWVKVEHVR WYSQIMKNARLVIMPRQTHDSYTVHSFKMLDLIKDFCR >gi|260196023|gb|ACQN01000044.1| GENE 21 23752 - 24564 698 270 aa, chain - ## HITS:1 COG:BS_yveT KEGG:ns NR:ns ## COG: BS_yveT COG0463 # Protein_GI_number: 16080481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 4 223 3 222 344 120 31.0 3e-27 MQQPKLTVIMPVYNLAEYLPRALDALLHQDESNFKLLIIDDGSTDKTSEILQQYRPKFPY FTVIKTKNGGPSSARNIGLSQVDTPYFTFHDGDDFVDPGYVSFFIRAFKLHPDCDMVSCG YYIDRPKGRSHVVGKPESGVLTKGNAFMKLTDIFASPMKGYCWNKGYRTKLVRKHNLLFD ADVAFMEDQIFNVKYISIARKVYYTQKPYYHYWQRSDSIVHKPNLKKTSDLLMGNYLIWS KIIKSIMKEREQEKAKKKANKILLKNSNID >gi|260196023|gb|ACQN01000044.1| GENE 22 24730 - 25689 1055 319 aa, chain + ## HITS:1 COG:SP1027 KEGG:ns NR:ns ## COG: SP1027 COG4086 # Protein_GI_number: 15900898 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Streptococcus pneumoniae TIGR4 # 6 311 10 322 324 115 32.0 2e-25 MKKFMAFLVAAIIATGFSFANKNTAKADDDTTPVVTLGSSLTSSQKQGTINTLTQSLNGA SYKTITVTGSDLVKYLNPSGETFTNSSGVWSSAMIQKTSSGSGINVKILNYNGSNNITTI TANQYKNAALTAGITDAHIYITSATPIDGSGALAGIYAAYAQSGNTLNQSQVNAAQSELN TLSSITQDNKNKDGYSDAQLNNAVAGAKADMAKYGSNITNNQITTIVNNQLEKNNLTNFI TNSQKQQIINLLITIKKSGALNSNSFKEQAQKLSSQIQEGAKSIFNKLNSQDTKNWIQKV IDAVVNFFKGLFGGAIILN >gi|260196023|gb|ACQN01000044.1| GENE 23 25742 - 26506 665 254 aa, chain - ## HITS:1 COG:CAC1415 KEGG:ns NR:ns ## COG: CAC1415 COG0861 # Protein_GI_number: 15894694 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Clostridium acetobutylicum # 7 245 11 236 246 184 45.0 2e-46 MIIFKMYQPFFEIDNWTHVITSGKDWLIILTLILMECLLSVDNAVVLAAQTQVLPTKLEK EKSLLYGLWGAYIFRFIIIGVGTYLIHFWEIKLVGSIYLFYLSFKFFYEQHHPEKVKQKH ERDSHHKSKKHIFSLFWRTVISIELMDIVFSIDSVLAALAISENPVIILIGGMIGILCMR GVAEIIIKLMEHIPELEPMAYILIGLIAMKLLLDLPPLEFEIPNNIFAIIIFIVLGITIL FHFWRIKKHGPKHF >gi|260196023|gb|ACQN01000044.1| GENE 24 26535 - 27302 744 255 aa, chain - ## HITS:1 COG:PA1815 KEGG:ns NR:ns ## COG: PA1815 COG0328 # Protein_GI_number: 15597012 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Pseudomonas aeruginosa # 100 249 6 140 148 77 33.0 2e-14 MKFYAVKKGRKIGIFRTWDECKEQVNGFSGAEYKSFSNILEASQYLDLSEDQKRAIMKPS EDNLTAAVEKIKAQSKVMAEKKTSMKKQTTASKSDYSQYEVVVFTDGGCRNHGNVKGGHV QEDDKAAWAYLIEHEGNRISKAGGEFGATNNKMELTGLIEAMKRILALKLNNKKTIFVLD SRYVLRPITEKWIWSWRNNGWKRSKGELKNKELWQELSRLLPQFKNAEFEWTHGHEDNYG NNFVDKALNIYMDKM >gi|260196023|gb|ACQN01000044.1| GENE 25 27378 - 28301 762 307 aa, chain + ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 68 304 47 286 289 105 31.0 1e-22 MFFNSRKYTEETEHNRIKQSQDPSMFNLISLGILASFPPSRFFLRLHPNKITSYSNYKIE PSTCQQTPILYIHGFRGGDYTTRVLVKEAGKAKHNPHYLKVTCDAFGNFTFEGTWTGDKY PIVQLVFRQRIAGMSAISYYLSRILPFLKKQFKFDTYFAVAHSLGAPAIIATAMRYFKHK KFPVLKKAALIAGPFDGVTYLGDIPNVNYLGEKGHPIAMNFTYLKFILGKKRICPDASIL NIYGNILDETNTDKFISVVSAKSIRYILAPQLKLYQEVEIRGENAEHSWLHDDPFVNDVI NRFLGLK >gi|260196023|gb|ACQN01000044.1| GENE 26 28339 - 29043 859 234 aa, chain + ## HITS:1 COG:BH1677 KEGG:ns NR:ns ## COG: BH1677 COG2738 # Protein_GI_number: 15614240 # Func_class: R General function prediction only # Function: Predicted Zn-dependent protease # Organism: Bacillus halodurans # 12 228 6 218 224 193 46.0 2e-49 MFFSPFLFWDPYFWLILVGLAITMWASWNVKSTFNRYATIPSHNNITGKEAAKLILEDAG IFDVTIQETSGELTDFYNPSDKTLNLSEPVYNSSSIAAICVAAHEAGHAIQDAKAYIPMS FRSKIVPIVNFGANLSMPLIILGVVLSFNQVLIRAGILCFALTLLFQIVTLPVEFNASNR ALKKVKMLGIINPNEYPAGRKVLFAAALTYVAAALSTFLQLLRLILLFADNDRN >gi|260196023|gb|ACQN01000044.1| GENE 27 29066 - 30523 880 485 aa, chain + ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 11 485 18 487 487 456 48.0 1e-128 MFWLKYLHIIVISINTILAFYVVFRRKRSVATAWAWLIILLIFPILGFILYGFFGRGLSQ ENLFAINKQNHIGLRNVQKMIPRFQKRAGKSDTAHKAQVAIEYFNQNREAPLSKNNKIKL YTDGHEKFRDLMSDIKNAKETINIEYYSFYNDDIGNQILNLLVKKAQEGIKVHLIYDAWG SFGATSKWFDKLRKAGGKVLPFITSRNMILRYRINYHLHRKIVVIDGRIAWTGGFNVGDQ YLGKKKKFGYWRDTHVRIIGSAALLLQERFVMDWNASITKISQVITFSEKLFPDLNEDEI TENNVATQIVADGPDSELPYMRNGMMRLMLLARKRLWIQTPYLIPDDAMIATWQIIVKSG VDLRIMIPSKPDHPFIYRATQWYANQLTKMGIKIYIYDNGFLHAKTIVGDFDYAVVGSMN QDYRSYSLNFEDMAVFYDSNINNELAQIFEEDMQNSHLLTIEEIQNQSRYLRSLQSFSRL LSPIL >gi|260196023|gb|ACQN01000044.1| GENE 28 30628 - 30735 64 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFFFMMVPINWLKKWSNLLWQSVKKLVLLMITHFK >gi|260196023|gb|ACQN01000044.1| GENE 29 30851 - 31402 332 183 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851784|ref|ZP_05557172.1| ## NR: gi|256851784|ref|ZP_05557172.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 183 1 183 183 275 100.0 1e-72 MIISELTKKERQMLSKFILRSYCDILHIKESFSAILILNLIYFGTNLIGNYSPTYFDEII TRFVILSDLILIILFGIMFYLIVYIIKKLYPKKQIFFLKKYKYNFPEIMEPAIKEAFDTF ITEKSIFLCKYKYGFENSNFYFLSIKINKDISSARSVILNKKTLTREQKNIIKKLAIKWK TIH >gi|260196023|gb|ACQN01000044.1| GENE 30 31427 - 33556 2118 709 aa, chain - ## HITS:1 COG:BS_ybfG KEGG:ns NR:ns ## COG: BS_ybfG COG3409 # Protein_GI_number: 16077289 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative peptidoglycan-binding domain-containing protein # Organism: Bacillus subtilis # 1 569 2 592 732 383 42.0 1e-106 MDERVKEVQVWLNETYGGVPGFEKAPIDGKTGWPTIYSLREGLQHELGISALGEGFGSST KAALSNIINKIRPGYSGNIVKLIKGAFWCKGINPTDFSASYGSELTNAVKTLQSDAGITA DGILTVQLMAALFDMSAFVVIHQTKKSELIRSMQQYLNSKYWQELGIMPCDGIYQRDTNT ALIYALQKACGVSGANGNYGPGTIAATPTVSVGQKGEVVKIIQYGLFVNGFNKAGDFSGY YSSKIGEEVVAFRKFMKLAPETSTTADLTVIKGLLTSNGNTNRDSIALDTSKQLTDTDIA NFKRYGFSVVGRYLTGSVGVGANKRPKNLTTDEIRRITNAGLAIFPIYEDGGYEVSYFNS KQGYSDAVTAIVNARNLGFPAGTTIYFAVDVDIQDGDIDGTVDPYLRAIHNVFVNCEYEA GVYGTRNVCLHGIEDGISASFVADMSYGWSGNLGFEMPENWAFDQFVEYTIGGTDIDQVA ASGSDKGSKKFRLPSTSTKPISANEALDILGSLLNLTSISFNQEYPLIKTPMLEESVEFE ESFTGTGGNPTFNISNGKLDGANLSGLLGPLFNNQQATVDAVFGKMGEMRLVSSISAGSL TIKTEAPVDGKVSCEIIFNIQKLENQLLTNELSIIFKFKVEPLDLVRTYPIPTTSPTPAP SPQLELEQQIMKVSVGATVAIALCNLLGFVLANIVQFLYYIFVTVVSVV Prediction of potential genes in microbial genomes Time: Wed May 25 14:16:17 2011 Seq name: gi|260196022|gb|ACQN01000045.1| Lactobacillus jensenii 115-3-CHN cont1.45, whole genome shotgun sequence Length of sequence - 2557 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 6/0.000 - CDS 53 - 352 369 ## COG3093 Plasmid maintenance system antidote protein 2 1 Op 2 . - CDS 373 - 657 346 ## COG3549 Plasmid maintenance system killer protein - Prom 681 - 740 6.7 3 2 Tu 1 . - CDS 887 - 1654 452 ## SSA_0044 hypothetical protein - Prom 1712 - 1771 6.8 Predicted protein(s) >gi|260196022|gb|ACQN01000045.1| GENE 1 53 - 352 369 99 aa, chain - ## HITS:1 COG:Cgl1005 KEGG:ns NR:ns ## COG: Cgl1005 COG3093 # Protein_GI_number: 19552255 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Corynebacterium glutamicum # 1 99 1 99 99 73 38.0 7e-14 MLKNTIPTPKISEVLSEEFMKPLNLSAYAVAKAIDVPSSRILDILHDKRKITVDTSVRLG KLFGVSPKFFLNIQNDIELRNAELANSKEYDKIKKISFA >gi|260196022|gb|ACQN01000045.1| GENE 2 373 - 657 346 94 aa, chain - ## HITS:1 COG:SMc02476 KEGG:ns NR:ns ## COG: SMc02476 COG3549 # Protein_GI_number: 15966812 # Func_class: R General function prediction only # Function: Plasmid maintenance system killer protein # Organism: Sinorhizobium meliloti # 1 94 1 92 92 95 52.0 2e-20 MIQTFANKETEKVYHQKFSKKLPQNIQKIAIRKFVMMDAAHDINDLRIPPANHLEKLEGD RKGQYSITINDQYRICFTVQTPNYFYNVEIVDYH >gi|260196022|gb|ACQN01000045.1| GENE 3 887 - 1654 452 255 aa, chain - ## HITS:1 COG:no KEGG:SSA_0044 NR:ns ## KEGG: SSA_0044 # Name: not_defined # Def: hypothetical protein # Organism: S.sanguinis # Pathway: not_defined # 1 233 125 378 378 192 45.0 1e-47 MWLVKDSCVQTNNIYINSSIGYISSVKLDIPYSMANGHPQNIALTKTENQQVNFYYKMLY PIMSKVGGNIPNPEYNSEYSFIRNYDVTDRSKESSFIRAIRSVQNARRTCQLPVKIDFYM QALQCLFALEGNRSTQIEKMLASTAINILKISGENEKDVVKQNFKLAFRIRSKHTHGNKI TYSDNEISAVSVKIDEYVREIIKIVFENKALDYSSKNEAKKVAKYFSNINKKTVNSKQKN VLPFTFLFYKNKRKR Prediction of potential genes in microbial genomes Time: Wed May 25 14:16:25 2011 Seq name: gi|260196021|gb|ACQN01000046.1| Lactobacillus jensenii 115-3-CHN cont1.46, whole genome shotgun sequence Length of sequence - 1865 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 207 - 1761 99.0 # EU559597 [D:1..1563] # 16S ribosomal RNA # Lactobacillus jensenii # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed May 25 14:16:26 2011 Seq name: gi|260196020|gb|ACQN01000047.1| Lactobacillus jensenii 115-3-CHN cont1.47, whole genome shotgun sequence Length of sequence - 3163 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 437 - 2990 91.0 # CP000412 [D:794850..797409] # 23S ribosomal RNA # Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + 5S_RRNA 3050 - 3151 99.0 # EU184020 [D:4881..4998] # 5S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed May 25 14:16:27 2011 Seq name: gi|260196019|gb|ACQN01000048.1| Lactobacillus jensenii 115-3-CHN cont1.48, whole genome shotgun sequence Length of sequence - 1538 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 40 - 99 7.4 1 1 Op 1 . + CDS 185 - 445 360 ## gi|238854552|ref|ZP_04644889.1| putative DNA-damage-inducible protein J 2 1 Op 2 . + CDS 435 - 713 218 ## LCRIS_01463 putative protein without homology 3 1 Op 3 . + CDS 734 - 901 78 ## gi|239633590|ref|ZP_04676621.1| predicted protein + Term 1129 - 1188 6.8 Predicted protein(s) >gi|260196019|gb|ACQN01000048.1| GENE 1 185 - 445 360 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854552|ref|ZP_04644889.1| ## NR: gi|238854552|ref|ZP_04644889.1| putative DNA-damage-inducible protein J [Lactobacillus jensenii 269-3] # 1 86 1 86 86 155 100.0 7e-37 MPVTLGIDNKLKEETKSNLEKMGLDMTTATKMYFIYINQHGKLPFTPSVGRSELDKALEQ VKNHEYAGEYDSLEDFRKDLYSLDEN >gi|260196019|gb|ACQN01000048.1| GENE 2 435 - 713 218 92 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01463 NR:ns ## KEGG: LCRIS_01463 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 89 1 93 97 70 43.0 1e-11 MRIKFTPLYKKSLKKLKKKHYNLQLLDECVTAIVTRDKKLLKKHKAHKLTNYYELHIQND WLLEYTFDKNTGELILILIDTGNHDDLKRKKY >gi|260196019|gb|ACQN01000048.1| GENE 3 734 - 901 78 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239633590|ref|ZP_04676621.1| ## NR: gi|239633590|ref|ZP_04676621.1| predicted protein [Lactobacillus jensenii 1153] # 1 55 1 55 55 102 100.0 6e-21 MKRLNDLHNPTINYNVAYDEETGVEYIVLSYGPSISITPRLDKFGKPLNYFDVNQ Prediction of potential genes in microbial genomes Time: Wed May 25 14:16:39 2011 Seq name: gi|260196018|gb|ACQN01000049.1| Lactobacillus jensenii 115-3-CHN cont1.49, whole genome shotgun sequence Length of sequence - 1457 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 341 - 386 10.0 1 1 Tu 1 . - CDS 389 - 742 163 ## lhv_1657 hypothetical protein - Prom 764 - 823 1.9 - Term 1058 - 1101 3.0 2 2 Tu 1 . - CDS 1161 - 1391 367 ## llmg_0339 acetoin(diacetyl)reductase (EC:1.1.1.5) Predicted protein(s) >gi|260196018|gb|ACQN01000049.1| GENE 1 389 - 742 163 117 aa, chain - ## HITS:1 COG:no KEGG:lhv_1657 NR:ns ## KEGG: lhv_1657 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 108 12 121 122 139 70.0 3e-32 MLHRENKIKEYHTSSAANLLKEVMDYYDITQKDLAARIGVSQKNISDILNRKRFLTEVLA LRIEKIMGISSKLLLALDSNYKLNLAKANINNQQKSSPLFLKKYDWVNHNTSNLSFN >gi|260196018|gb|ACQN01000049.1| GENE 2 1161 - 1391 367 76 aa, chain - ## HITS:1 COG:no KEGG:llmg_0339 NR:ns ## KEGG: llmg_0339 # Name: dar # Def: acetoin(diacetyl)reductase (EC:1.1.1.5) # Organism: L.lactis_MG1363 # Pathway: Butanoate metabolism [PATH:llm00650] # 1 66 1 66 256 73 62.0 2e-12 MTKLAIVTGAGQGIGKGIAERLVKDGYAIAVADINSETATEVANKLRNKGYQAKAYYVDV GENKIVNVIYSAYVFS Prediction of potential genes in microbial genomes Time: Wed May 25 14:16:43 2011 Seq name: gi|260196017|gb|ACQN01000050.1| Lactobacillus jensenii 115-3-CHN cont1.50, whole genome shotgun sequence Length of sequence - 1370 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 62 - 1240 1162 ## COG3328 Transposase and inactivated derivatives - Prom 1275 - 1334 6.7 Predicted protein(s) >gi|260196017|gb|ACQN01000050.1| GENE 1 62 - 1240 1162 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE Prediction of potential genes in microbial genomes Time: Wed May 25 14:16:44 2011 Seq name: gi|260196016|gb|ACQN01000051.1| Lactobacillus jensenii 115-3-CHN cont1.51, whole genome shotgun sequence Length of sequence - 1287 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 27 - 86 7.8 1 1 Op 1 . + CDS 173 - 325 247 ## PROTEIN SUPPORTED gi|238855180|ref|ZP_04645501.1| ribosomal protein L33 2 1 Op 2 . + CDS 341 - 1286 1038 ## EF0573 hypothetical protein Predicted protein(s) >gi|260196016|gb|ACQN01000051.1| GENE 1 173 - 325 247 50 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855180|ref|ZP_04645501.1| ribosomal protein L33 [Lactobacillus jensenii 269-3] # 1 50 1 50 50 99 98 1e-21 MRNNIILECRQTSERIYITSKNKHNTPERLRLMKYSPKLQKRAEFVEISK >gi|260196016|gb|ACQN01000051.1| GENE 2 341 - 1286 1038 315 aa, chain + ## HITS:1 COG:no KEGG:EF0573 NR:ns ## KEGG: EF0573 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 224 1 225 536 185 46.0 2e-45 MKSKLLLASLMVSGAILVGTNQNSIVKADDLSSTTEVNSGVSFTGIFRYTNGLPIESGSY VQLKNLANNETISKTVNASGAVTFNATDGLKTGISYEVFVNNQKLNYTLQLSSGNSNISK TFTVNLPGAELPLTYTVNAHYTNGLPLSEGTEVKLRNLTDGSTEVLTKKVNSQGSVTFTE ADGLKKGVNYSVAVPGLTTGYSIRYDLGGNKSKDFILETTEAKISEQNSASSSSSNLLSS STNSTSLSNSNKANSTSSEDLKKQALHIAATASDKVTSATNLPIKHQVQNLPQTGTKSAL LLTFLGLLSLFASKL Prediction of potential genes in microbial genomes Time: Wed May 25 14:16:53 2011 Seq name: gi|260196015|gb|ACQN01000052.1| Lactobacillus jensenii 115-3-CHN cont1.52, whole genome shotgun sequence Length of sequence - 1257 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 63 - 1241 1061 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|260196015|gb|ACQN01000052.1| GENE 1 63 - 1241 1061 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 376 46.0 1e-104 MNDFTKNIAQALFNQDKINDLLRKELQQAVNDLLEAELTAFLGYDPYARAGWNTGNSRNG AYFRKVDTQFGEIKIQVPRDRNGMFHQHTLPDYKQHSNVLESMIIKLYSKGVTTREIADL IEKMYGSHYSPAQVSNISKQMIPKVEAYHQRKFSDKFFCVYLDATYIPLRRITFDREAVY IAIGIKPNGHKEVIDYRIAPSENVENWTEMLQDMKSRGLEQVELFLSDGVVGMKTVLEQT YPKAHFQRCLVHVMRNICAKVRVDDRETIMNEFKQIHQQPNKEAAIKVLHAFYDKWNRAY NHVIRNLKEIEPDLLVFYSYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLNTF IGIQAMSYNERYFNRIHKGFGQVQDTLESYFD Prediction of potential genes in microbial genomes Time: Wed May 25 14:16:53 2011 Seq name: gi|260196014|gb|ACQN01000053.1| Lactobacillus jensenii 115-3-CHN cont1.53, whole genome shotgun sequence Length of sequence - 1111 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1110 703 ## COG4485 Predicted membrane protein Predicted protein(s) >gi|260196014|gb|ACQN01000053.1| GENE 1 3 - 1110 703 369 aa, chain - ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 5 268 186 447 883 68 25.0 2e-11 FSFPYILLLAITIVANYYTAFMVCLFLVGFFIYQSYLNYSNWKNLLRNSLYFSIASLTAG ALAAFSIAPTAFNLLENKLNYSLASPNISFFHVWQELPATMLFYTRSWQLPLLFVGTITL ILTISFFFNRSIPIKVRLASLLFSLFTASGLLNGKLYILWHASQPPQLFPYRFVFLITFI MVFFASYQLANHNSKADLKISTACFLFFLAFYFFRSRKLLFLNAAACFLALLIALISLAL VILYYTKKINPWIPAAFLILEMFLSATIFWNNIKQPSTNITNYTAQTQTFINQLPKTAKD QRLAKSFLLNNDRGESYTFNYRGAEVFSSNNDPKISDFYSLLGLPGTGYFYFYSTSTQLT DALFDIKTF Prediction of potential genes in microbial genomes Time: Wed May 25 14:16:54 2011 Seq name: gi|260196013|gb|ACQN01000054.1| Lactobacillus jensenii 115-3-CHN cont1.54, whole genome shotgun sequence Length of sequence - 965 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 11 - 571 185 ## lhv_1083 putative transposase Predicted protein(s) >gi|260196013|gb|ACQN01000054.1| GENE 1 11 - 571 185 186 aa, chain - ## HITS:1 COG:no KEGG:lhv_1083 NR:ns ## KEGG: lhv_1083 # Name: not_defined # Def: putative transposase # Organism: L.helveticus # Pathway: not_defined # 1 186 100 285 285 372 97.0 1e-102 MNKKVDLNGQFLIIDSFPVPVCQPIRNYRAKIFRGYANIGYKATKKIYFYGFKVHVIVSD DGYILDYVVTKASVHDAKETVELMENTHPSNYYLLGDEGYLGKELHQQLKQMGYELWTPY RKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAY CLERFN Prediction of potential genes in microbial genomes Time: Wed May 25 14:16:58 2011 Seq name: gi|260196012|gb|ACQN01000055.1| Lactobacillus jensenii 115-3-CHN cont1.55, whole genome shotgun sequence Length of sequence - 706 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 704 843 ## Apre_1411 sugar-binding domain protein Predicted protein(s) >gi|260196012|gb|ACQN01000055.1| GENE 1 2 - 704 843 234 aa, chain - ## HITS:1 COG:no KEGG:Apre_1411 NR:ns ## KEGG: Apre_1411 # Name: not_defined # Def: sugar-binding domain protein # Organism: A.prevotii # Pathway: not_defined # 9 234 1331 1538 2126 79 32.0 1e-13 EDLNRNIKKVPVEGDRDITDTEKAEVIKNIKDGNPDKDITDVTVKPDGTATVTMGDGTQS TFTPEETVNRYKLIDPLTNPGEDQGFNSNFDKVPVKGDGDLTDEQKQAVKENITKSNPDK GITNIEVKGNGSTTVTFEDGTTKDLTPDQTIKRYELGDPLFNEGKDKNFDGNFDKVPVKG DGDLTDEQKQAVKENITKSNPDKGITNIEVKGDGSTTVTFEDGTTKDLTPDQTI Prediction of potential genes in microbial genomes Time: Wed May 25 14:17:02 2011 Seq name: gi|260196011|gb|ACQN01000056.1| Lactobacillus jensenii 115-3-CHN cont1.56, whole genome shotgun sequence Length of sequence - 657 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 655 721 ## gi|282932375|ref|ZP_06337806.1| putative surface anchor protein Predicted protein(s) >gi|260196011|gb|ACQN01000056.1| GENE 1 1 - 655 721 218 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282932375|ref|ZP_06337806.1| ## NR: gi|282932375|ref|ZP_06337806.1| putative surface anchor protein [Lactobacillus jensenii 208-1] # 1 218 2088 2305 2755 279 99.0 9e-74 ETDKSELEALVKEAPEVKEANKNASTKAKEAYDEAIQAGQDVLDNSDATQSEVNEAKEKI EEAKRNLANEIKTLAEKLNVEVTKTEVGDKENITESEKSEITKNVTDAVQAKNPNDKFEV SVDNQGNATVTFEDGSVGQITNDKTTKAVDKTGLQSDVNKQAAVHKTSKYYNASEETKQA YDEAIQAGQVVLDNEKATKQAVIDARSEIQKALDALDG Prediction of potential genes in microbial genomes Time: Wed May 25 14:17:12 2011 Seq name: gi|260196010|gb|ACQN01000057.1| Lactobacillus jensenii 115-3-CHN cont1.57, whole genome shotgun sequence Length of sequence - 607 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 1 - 31 1.9 1 1 Tu 1 . - CDS 35 - 511 647 ## LBA0145 2-deoxyribosyltransferase - Prom 547 - 606 10.0 Predicted protein(s) >gi|260196010|gb|ACQN01000057.1| GENE 1 35 - 511 647 158 aa, chain - ## HITS:1 COG:no KEGG:LBA0145 NR:ns ## KEGG: LBA0145 # Name: not_defined # Def: 2-deoxyribosyltransferase # Organism: L.acidophilus # Pathway: Pyrimidine metabolism [PATH:lac00240] # 1 158 2 159 159 289 87.0 2e-77 MTRTRTLYFGAGWFNEKQTKAYDAAMTALKENPTIDLEHSYVPLQNQYKGIRVDEHPEYL HDKEWASATYTNDLIGIKTSDIMLGVYLPEEEDVGLGMELGYAMSQGKYVLLVIPDEDLG KPINLMSWGVCDNAIKISELKDFDFNKPRFGFYEGAVY Prediction of potential genes in microbial genomes Time: Wed May 25 14:17:15 2011 Seq name: gi|260196009|gb|ACQN01000058.1| Lactobacillus jensenii 115-3-CHN cont1.58, whole genome shotgun sequence Length of sequence - 526 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 29 - 524 354 ## LCRIS_01779 hypothetical protein Predicted protein(s) >gi|260196009|gb|ACQN01000058.1| GENE 1 29 - 524 354 165 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01779 NR:ns ## KEGG: LCRIS_01779 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 148 1 152 176 135 51.0 4e-31 MKILLKDLLEKIENEDYIQDLETEKYSALTKSKVKTISQNLVKQVLAALKHNSLAHVQLD VTGQRPASFILETNVVNLPYANYKKIGNFVSADEPLPVKIYFEVSSEYINASKFWIEELA GVDDLNEEIIADHFADLINQKLVDVRNYVKPEKTVSAKKTKEKTK