Prediction of potential genes in microbial genomes Time: Wed Jul 13 08:18:02 2011 Seq name: gi|313656766|gb|GL545251.1| Lactobacillus jensenii 1153 genomic scaffold supercont2.1, whole genome shotgun sequence Length of sequence - 1746219 bp Number of predicted genes - 1874, with homology - 1861 Number of transcription units - 811, operones - 456 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 257 - 358 99.0 # EU184020 [D:4881..4998] # 5S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + TRNA 375 - 447 86.4 # Val TAC 0 0 + TRNA 454 - 526 83.3 # Lys TTT 0 0 + TRNA 541 - 622 61.1 # Leu TAG 0 0 + TRNA 653 - 725 80.3 # Thr TGT 0 0 + TRNA 737 - 808 79.2 # Gly GCC 0 0 + TRNA 821 - 906 65.5 # Leu TAA 0 0 + TRNA 916 - 989 70.9 # Arg ACG 0 0 + TRNA 994 - 1067 87.7 # Pro TGG 0 0 + TRNA 1100 - 1173 73.7 # Met CAT 0 0 + TRNA 1184 - 1257 87.0 # Met CAT 0 0 + TRNA 1293 - 1365 45.4 # Arg TCT 0 0 + TRNA 1369 - 1442 65.5 # Asp GTC 0 0 + TRNA 1450 - 1522 78.2 # Phe GAA 0 0 + TRNA 1543 - 1613 66.1 # Gly TCC 0 0 + TRNA 1619 - 1692 91.8 # Ile GAT 0 0 + TRNA 1696 - 1785 53.3 # Ser GCT 0 0 - Term 1831 - 1871 3.4 1 1 Op 1 . - CDS 1898 - 2803 709 ## COG3464 Transposase and inactivated derivatives 2 1 Op 2 . - CDS 2814 - 3161 80 ## LDBND_0944 transposase - Prom 3251 - 3310 5.7 - Term 3294 - 3326 5.6 3 2 Tu 1 . - CDS 3331 - 4269 698 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 4304 - 4363 6.8 + Prom 4339 - 4398 12.8 4 3 Tu 1 . + CDS 4466 - 7204 2845 ## COG1511 Predicted membrane protein + Term 7224 - 7266 7.1 + TRNA 7406 - 7477 64.4 # Glu TTC 0 0 + TRNA 7515 - 7605 63.8 # Ser TGA 0 0 + TRNA 7614 - 7688 67.8 # Met CAT 0 0 + TRNA 7692 - 7765 65.5 # Asp GTC 0 0 + TRNA 7771 - 7843 78.2 # Phe GAA 0 0 + TRNA 7853 - 7934 65.6 # Tyr GTA 0 0 + TRNA 7939 - 8009 60.9 # Trp CCA 0 0 + TRNA 8023 - 8098 58.5 # His GTG 0 0 + TRNA 8148 - 8218 67.2 # Cys GCA 0 0 + TRNA 8246 - 8329 61.6 # Leu CAA 0 0 + Prom 8259 - 8318 80.4 5 4 Op 1 25/0.000 + CDS 8430 - 9596 1238 ## COG0438 Glycosyltransferase 6 4 Op 2 4/0.036 + CDS 9589 - 10635 798 ## COG0438 Glycosyltransferase + Term 10805 - 10851 1.4 + Prom 10951 - 11010 8.1 7 5 Op 1 . + CDS 11034 - 11636 455 ## COG0392 Predicted integral membrane protein + Prom 11640 - 11699 7.7 8 5 Op 2 1/0.185 + CDS 11730 - 13805 1837 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 13815 - 13853 1.3 + Prom 13810 - 13869 6.0 9 6 Op 1 . + CDS 13902 - 14924 1400 ## COG0773 UDP-N-acetylmuramate-alanine ligase 10 6 Op 2 . + CDS 14918 - 15208 220 ## COG0773 UDP-N-acetylmuramate-alanine ligase + Term 15212 - 15255 8.6 + Prom 15216 - 15275 6.7 11 7 Op 1 . + CDS 15312 - 17321 1864 ## COG0258 5'-3' exonuclease (including N-terminal domain of PolI) 12 7 Op 2 4/0.036 + CDS 17345 - 17968 630 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 13 7 Op 3 . + CDS 17981 - 18394 341 ## COG0266 Formamidopyrimidine-DNA glycosylase 14 7 Op 4 4/0.036 + CDS 18430 - 18801 72 ## COG0266 Formamidopyrimidine-DNA glycosylase 15 7 Op 5 1/0.185 + CDS 18806 - 19420 326 ## COG0237 Dephospho-CoA kinase 16 7 Op 6 6/0.005 + CDS 19398 - 19865 482 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 17 7 Op 7 8/0.005 + CDS 19882 - 21189 798 ## COG3611 Replication initiation/membrane attachment protein 18 7 Op 8 . + CDS 21245 - 22141 604 ## COG1484 DNA replication protein 19 7 Op 9 . + CDS 22164 - 23612 1305 ## COG3590 Predicted metalloendopeptidase 20 7 Op 10 . + CDS 23588 - 24118 453 ## COG3590 Predicted metalloendopeptidase + Term 24354 - 24398 12.1 + Prom 24120 - 24179 8.8 21 8 Tu 1 . + CDS 24410 - 26341 2900 ## COG0441 Threonyl-tRNA synthetase + Term 26488 - 26525 1.1 - Term 26405 - 26434 -0.2 22 9 Tu 1 . - CDS 26437 - 26727 120 ## - Prom 26759 - 26818 2.0 + Prom 26343 - 26402 11.4 23 10 Op 1 36/0.000 + CDS 26570 - 27079 408 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 24 10 Op 2 46/0.000 + CDS 27109 - 27309 345 ## PROTEIN SUPPORTED gi|227526539|ref|ZP_03956588.1| 50S ribosomal protein L35 25 10 Op 3 . + CDS 27353 - 27709 592 ## PROTEIN SUPPORTED gi|227526538|ref|ZP_03956587.1| ribosomal protein L20 + Term 27726 - 27763 4.0 + Prom 27854 - 27913 7.6 26 11 Tu 1 . + CDS 27947 - 28249 372 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 28293 - 28338 10.1 27 12 Tu 1 . - CDS 28281 - 29675 1375 ## COG2801 Transposase and inactivated derivatives - Prom 29722 - 29781 3.0 + Prom 29589 - 29648 6.3 28 13 Op 1 6/0.005 + CDS 29834 - 30997 1072 ## COG1012 NAD-dependent aldehyde dehydrogenases 29 13 Op 2 . + CDS 31042 - 32022 1043 ## COG1454 Alcohol dehydrogenase, class IV + Term 32037 - 32079 4.0 + Prom 32029 - 32088 7.4 30 14 Op 1 6/0.005 + CDS 32110 - 32640 432 ## COG2179 Predicted hydrolase of the HAD superfamily 31 14 Op 2 1/0.185 + CDS 32625 - 33734 1052 ## COG1161 Predicted GTPases 32 14 Op 3 9/0.005 + CDS 33748 - 34377 675 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 33 14 Op 4 6/0.005 + CDS 34445 - 34978 455 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 34 14 Op 5 . + CDS 34981 - 35328 411 ## COG0799 Uncharacterized homolog of plant Iojap protein 35 14 Op 6 . + CDS 35331 - 36482 1111 ## COG1323 Predicted nucleotidyltransferase 36 14 Op 7 1/0.185 + CDS 36482 - 37027 615 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein + Prom 37118 - 37177 7.9 37 15 Op 1 . + CDS 37202 - 37924 1058 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 38 15 Op 2 . + CDS 37899 - 38792 375 ## FI9785_1424 two-component system sensor histidine kinase (EC:2.7.3.-) 39 15 Op 3 3/0.062 + CDS 38705 - 39466 748 ## COG0642 Signal transduction histidine kinase + Term 39473 - 39507 5.3 + Prom 39474 - 39533 5.4 40 16 Op 1 45/0.000 + CDS 39594 - 40463 895 ## COG1131 ABC-type multidrug transport system, ATPase component 41 16 Op 2 6/0.005 + CDS 40466 - 41203 647 ## COG0842 ABC-type multidrug transport system, permease component 42 16 Op 3 19/0.000 + CDS 41274 - 42332 854 ## COG4585 Signal transduction histidine kinase 43 16 Op 4 . + CDS 42335 - 42940 719 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Prom 42959 - 43018 3.5 44 16 Op 5 . + CDS 43038 - 43925 1176 ## COG4975 Putative glucose uptake permease + Term 43939 - 43996 15.1 - Term 43934 - 43974 4.1 45 17 Op 1 . - CDS 43987 - 44910 819 ## COG0706 Preprotein translocase subunit YidC - Prom 44930 - 44989 6.1 46 17 Op 2 . - CDS 45010 - 45285 375 ## COG0068 Hydrogenase maturation factor - Prom 45502 - 45561 5.8 + Prom 45257 - 45316 3.1 47 18 Op 1 . + CDS 45370 - 46137 178 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 48 18 Op 2 1/0.185 + CDS 46212 - 46562 426 ## COG1733 Predicted transcriptional regulators + Term 46699 - 46739 -1.0 + Prom 46673 - 46732 3.8 49 19 Op 1 40/0.000 + CDS 46860 - 47909 1236 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 50 19 Op 2 . + CDS 47910 - 50318 2992 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 51 19 Op 3 . + CDS 50405 - 50860 671 ## COG0782 Transcription elongation factor 52 19 Op 4 . + CDS 50876 - 51079 120 ## + Term 51172 - 51216 -0.6 - Term 50873 - 50909 7.5 53 20 Tu 1 . - CDS 51062 - 53476 1706 ## COG4485 Predicted membrane protein - Prom 53658 - 53717 9.8 + Prom 53420 - 53479 8.3 54 21 Op 1 . + CDS 53656 - 55719 1941 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 55 21 Op 2 . + CDS 55795 - 55944 267 ## PROTEIN SUPPORTED gi|238854482|ref|ZP_04644821.1| ribosomal protein L33 + Term 55954 - 55987 3.1 56 21 Op 3 4/0.036 + CDS 55988 - 56545 499 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 57 21 Op 4 3/0.062 + CDS 56589 - 57278 804 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 58 21 Op 5 1/0.185 + CDS 57278 - 57487 217 ## COG4483 Uncharacterized protein conserved in bacteria 59 21 Op 6 . + CDS 57532 - 57933 366 ## COG0607 Rhodanese-related sulfurtransferase + Term 57939 - 57991 9.7 - Term 57927 - 57977 10.1 60 22 Tu 1 . - CDS 58023 - 58202 357 ## LGAS_1381 hypothetical protein - Prom 58225 - 58284 8.0 61 23 Op 1 . + CDS 58271 - 59191 855 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 62 23 Op 2 . + CDS 59184 - 60116 1150 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance 63 23 Op 3 1/0.185 + CDS 60170 - 60430 312 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance + Prom 60467 - 60526 12.4 64 24 Tu 1 . + CDS 60683 - 62020 1491 ## COG0174 Glutamine synthetase + Term 62046 - 62090 8.4 - Term 62041 - 62072 3.4 65 25 Tu 1 . - CDS 62076 - 62831 462 ## COG0775 Nucleoside phosphorylase - Prom 62861 - 62920 12.1 + Prom 62881 - 62940 10.0 66 26 Tu 1 . + CDS 63021 - 64103 1177 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein + Term 64122 - 64178 12.3 - Term 64174 - 64219 11.1 67 27 Tu 1 . - CDS 64238 - 65431 1077 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 65494 - 65553 4.9 + Prom 65547 - 65606 6.0 68 28 Tu 1 . + CDS 65647 - 66825 1032 ## COG0477 Permeases of the major facilitator superfamily + Term 66834 - 66881 8.7 - Term 66829 - 66862 2.1 69 29 Tu 1 . - CDS 66873 - 67382 419 ## gi|238854496|ref|ZP_04644835.1| hypothetical protein LACJE0001_0124 - Prom 67431 - 67490 3.6 + Prom 67727 - 67786 8.5 70 30 Op 1 . + CDS 68027 - 68374 80 ## LDBND_0944 transposase 71 30 Op 2 . + CDS 68385 - 69290 700 ## COG3464 Transposase and inactivated derivatives - Term 69358 - 69399 4.8 72 31 Op 1 . - CDS 69546 - 71924 2927 ## LA2_07925 x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) 73 31 Op 2 . - CDS 71936 - 72292 340 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 72474 - 72533 79.6 + TRNA 72457 - 72533 88.0 # Arg TCT 0 0 74 32 Op 1 . + CDS 72829 - 73791 943 ## COG1482 Phosphomannose isomerase 75 32 Op 2 . + CDS 73805 - 74197 425 ## LAC30SC_03740 integral membrane protein 76 32 Op 3 40/0.000 + CDS 74197 - 74919 921 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 75000 - 75059 2.7 77 32 Op 4 . + CDS 75149 - 76381 1168 ## COG0642 Signal transduction histidine kinase + Term 76384 - 76443 6.1 78 33 Tu 1 . + CDS 76755 - 79205 2882 ## Apre_1411 sugar-binding domain-containing protein + Term 79268 - 79309 9.2 - Term 79250 - 79304 13.8 79 34 Tu 1 . - CDS 79469 - 80647 1093 ## COG3328 Transposase and inactivated derivatives - Prom 80804 - 80863 7.6 + Prom 80695 - 80754 8.0 80 35 Op 1 . + CDS 80931 - 83081 2220 ## gi|238855688|ref|ZP_04645986.1| putative surface protein 81 35 Op 2 . + CDS 83178 - 87608 6463 ## COG0457 FOG: TPR repeat + Term 87632 - 87676 6.5 + Prom 87682 - 87741 9.3 82 36 Tu 1 . + CDS 87792 - 89057 1568 ## COG3919 Predicted ATP-grasp enzyme + Term 89060 - 89123 14.7 - Term 89053 - 89107 10.7 83 37 Tu 1 . - CDS 89109 - 91307 1442 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 91328 - 91387 6.5 + Prom 91309 - 91368 5.4 84 38 Tu 1 . + CDS 91438 - 92016 326 ## COG4767 Glycopeptide antibiotics resistance protein + Prom 92041 - 92100 5.8 85 39 Tu 1 . + CDS 92131 - 93468 1911 ## COG0166 Glucose-6-phosphate isomerase + Term 93515 - 93549 5.3 + Prom 93478 - 93537 5.8 86 40 Op 1 . + CDS 93584 - 94939 1131 ## COG0477 Permeases of the major facilitator superfamily + Prom 94942 - 95001 2.0 87 40 Op 2 . + CDS 95023 - 95262 285 ## gi|256850887|ref|ZP_05556276.1| predicted protein + Term 95284 - 95317 2.1 - TRNA 95431 - 95506 56.3 # Gln CTG 0 0 - TRNA 95512 - 95583 62.2 # Glu CTC 0 0 + Prom 95588 - 95647 10.3 88 41 Op 1 6/0.005 + CDS 95676 - 96143 419 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 89 41 Op 2 . + CDS 96098 - 96682 447 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Term 96667 - 96707 7.2 90 42 Tu 1 . - CDS 96712 - 98067 1404 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 98225 - 98284 6.7 + Prom 98122 - 98181 3.1 91 43 Op 1 3/0.062 + CDS 98235 - 98810 616 ## COG1435 Thymidine kinase 92 43 Op 2 32/0.000 + CDS 98839 - 99927 1463 ## COG0216 Protein chain release factor A 93 43 Op 3 10/0.000 + CDS 99920 - 100762 312 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 94 43 Op 4 . + CDS 100762 - 101718 1199 ## COG0009 Putative translation factor (SUA5) + Term 101772 - 101809 5.7 + Prom 101757 - 101816 11.2 95 44 Tu 1 . + CDS 101846 - 102475 895 ## COG0035 Uracil phosphoribosyltransferase + Term 102512 - 102564 3.3 + Prom 102485 - 102544 7.4 96 45 Op 1 40/0.000 + CDS 102608 - 103324 634 ## COG0356 F0F1-type ATP synthase, subunit a 97 45 Op 2 37/0.000 + CDS 103346 - 103561 389 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 98 45 Op 3 38/0.000 + CDS 103599 - 104108 712 ## COG0711 F0F1-type ATP synthase, subunit b 99 45 Op 4 41/0.000 + CDS 104108 - 104656 643 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 100 45 Op 5 42/0.000 + CDS 104671 - 106185 1674 ## COG0056 F0F1-type ATP synthase, alpha subunit 101 45 Op 6 42/0.000 + CDS 106196 - 107158 1247 ## COG0224 F0F1-type ATP synthase, gamma subunit 102 45 Op 7 42/0.000 + CDS 107180 - 108622 1816 ## COG0055 F0F1-type ATP synthase, beta subunit 103 45 Op 8 . + CDS 108634 - 109077 571 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 109080 - 109122 5.8 104 46 Op 1 . + CDS 109130 - 109366 232 ## LDBND_0644 membrane protein + Prom 109368 - 109427 2.4 105 46 Op 2 . + CDS 109447 - 110436 1283 ## COG1077 Actin-like ATPase involved in cell morphogenesis 106 47 Op 1 . + CDS 110545 - 110733 156 ## COG0759 Uncharacterized conserved protein 107 47 Op 2 . + CDS 110742 - 110918 207 ## gi|313471890|ref|ZP_07812382.1| conserved hypothetical protein 108 47 Op 3 . + CDS 110988 - 112178 1155 ## COG0772 Bacterial cell division membrane protein + Term 112183 - 112224 9.2 - Term 112171 - 112212 9.2 109 48 Tu 1 . - CDS 112429 - 113607 1093 ## COG3328 Transposase and inactivated derivatives - Prom 113642 - 113701 6.7 + Prom 113751 - 113810 8.6 110 49 Tu 1 5/0.021 + CDS 113832 - 114380 463 ## COG2189 Adenine specific DNA methylase Mod + Prom 114447 - 114506 7.8 111 50 Op 1 5/0.021 + CDS 114533 - 115057 247 ## COG2189 Adenine specific DNA methylase Mod 112 50 Op 2 3/0.062 + CDS 115084 - 115818 552 ## COG2189 Adenine specific DNA methylase Mod 113 50 Op 3 . + CDS 115824 - 118349 1750 ## COG3421 Uncharacterized protein conserved in bacteria + Term 118532 - 118589 15.6 - Term 118528 - 118569 9.2 114 51 Op 1 . - CDS 118595 - 119035 666 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 115 51 Op 2 . - CDS 119100 - 119372 132 ## - Prom 119613 - 119672 6.8 116 52 Op 1 . - CDS 119678 - 120979 1327 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 117 52 Op 2 . - CDS 120976 - 121443 544 ## COG5506 Uncharacterized conserved protein - Term 121457 - 121508 13.1 118 52 Op 3 . - CDS 121525 - 122136 1046 ## PROTEIN SUPPORTED gi|238855293|ref|ZP_04645612.1| ribosomal protein S4 - Prom 122157 - 122216 6.1 + Prom 122130 - 122189 12.9 119 53 Op 1 . + CDS 122429 - 123403 900 ## COG4477 Negative regulator of septation ring formation 120 53 Op 2 3/0.062 + CDS 123316 - 124161 644 ## COG4477 Negative regulator of septation ring formation + Term 124208 - 124237 1.4 + Prom 124165 - 124224 1.9 121 54 Op 1 7/0.005 + CDS 124248 - 125402 969 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 122 54 Op 2 . + CDS 125412 - 126626 1409 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase 123 54 Op 3 . + CDS 126626 - 127330 638 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 127341 - 127400 3.2 124 55 Op 1 8/0.005 + CDS 127589 - 130240 3113 ## COG0525 Valyl-tRNA synthetase 125 55 Op 2 . + CDS 130242 - 130607 220 ## COG0285 Folylpolyglutamate synthase 126 55 Op 3 . + CDS 130631 - 131491 693 ## COG0285 Folylpolyglutamate synthase 127 55 Op 4 . + CDS 131488 - 132168 672 ## COG0637 Predicted phosphatase/phosphohexomutase 128 55 Op 5 4/0.036 + CDS 132203 - 132826 588 ## COG2003 DNA repair proteins + Prom 132832 - 132891 5.6 129 56 Op 1 . + CDS 132925 - 133221 144 ## COG1077 Actin-like ATPase involved in cell morphogenesis 130 56 Op 2 22/0.000 + CDS 133182 - 133928 935 ## COG1077 Actin-like ATPase involved in cell morphogenesis + Term 133930 - 133961 0.9 131 56 Op 3 . + CDS 133978 - 134835 746 ## COG1792 Cell shape-determining protein 132 56 Op 4 . + CDS 134835 - 135380 503 ## LJ0964 rod shape-determining protein MreD + Term 135384 - 135419 5.1 + Prom 135407 - 135466 7.8 133 57 Tu 1 . + CDS 135632 - 135961 174 ## LCRIS_00820 hypothetical protein + Term 136022 - 136061 6.0 + Prom 136007 - 136066 8.9 134 58 Op 1 29/0.000 + CDS 136159 - 136590 649 ## COG2001 Uncharacterized protein conserved in bacteria 135 58 Op 2 . + CDS 136587 - 137540 981 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 136 58 Op 3 . + CDS 137553 - 137927 476 ## LGAS_1208 protein required for the initiation of cell division 137 58 Op 4 3/0.062 + CDS 137930 - 139195 1088 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 138 58 Op 5 4/0.036 + CDS 139192 - 140091 814 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 139 58 Op 6 1/0.185 + CDS 140113 - 140409 340 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase + Prom 140421 - 140480 4.3 140 59 Op 1 28/0.000 + CDS 140529 - 141056 480 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 141 59 Op 2 4/0.036 + CDS 141076 - 142446 1636 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 142 59 Op 3 . + CDS 142449 - 142928 470 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 143 59 Op 4 3/0.062 + CDS 143018 - 143560 418 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 144 59 Op 5 . + CDS 143591 - 144187 617 ## COG1589 Cell division septal protein 145 59 Op 6 . + CDS 144118 - 144444 178 ## LDBND_0677 cell division protein FtsQ + Prom 144474 - 144533 2.8 146 60 Op 1 35/0.000 + CDS 144647 - 145894 1353 ## COG0849 Actin-like ATPase involved in cell division 147 60 Op 2 . + CDS 145909 - 147270 1639 ## COG0206 Cell division GTPase 148 60 Op 3 . + CDS 147286 - 147744 521 ## COG1799 Uncharacterized protein conserved in bacteria 149 60 Op 4 . + CDS 147744 - 148031 346 ## LAC30SC_04060 cell division membrane protein 150 60 Op 5 . + CDS 148077 - 148901 363 ## PROTEIN SUPPORTED gi|227891037|ref|ZP_04008842.1| ribosomal protein S4e 151 60 Op 6 . + CDS 148907 - 149257 311 ## LAC30SC_04070 cell division initiation protein 152 60 Op 7 . + CDS 149233 - 149601 148 ## gi|238855266|ref|ZP_04645585.1| cell division initiation protein + Term 149767 - 149802 5.1 + Prom 149728 - 149787 3.7 153 61 Op 1 . + CDS 149816 - 152608 3689 ## COG0060 Isoleucyl-tRNA synthetase 154 61 Op 2 2/0.118 + CDS 152608 - 152829 285 ## COG1278 Cold shock proteins 155 61 Op 3 . + CDS 152829 - 153395 811 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 156 61 Op 4 . + CDS 153388 - 153666 298 ## gi|238855262|ref|ZP_04645581.1| conserved hypothetical protein 157 61 Op 5 . + CDS 153680 - 154369 783 ## COG0775 Nucleoside phosphorylase 158 61 Op 6 . + CDS 154388 - 155551 1167 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 159 61 Op 7 . + CDS 155603 - 155938 411 ## FI9785_1219 hypothetical protein 160 61 Op 8 . + CDS 155952 - 157079 1360 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + Term 157084 - 157136 12.3 - Term 157327 - 157385 0.9 161 62 Op 1 1/0.185 - CDS 157397 - 157708 347 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 162 62 Op 2 . - CDS 157723 - 158121 483 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain - Prom 158147 - 158206 9.6 + Prom 158133 - 158192 8.4 163 63 Op 1 . + CDS 158225 - 159112 698 ## COG0583 Transcriptional regulator 164 63 Op 2 . + CDS 159131 - 159790 704 ## COG0406 Fructose-2,6-bisphosphatase 165 63 Op 3 . + CDS 159790 - 160425 587 ## LAC30SC_04125 TPR repeat-containing protein 166 63 Op 4 . + CDS 160431 - 162803 2195 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 162981 - 163026 -0.1 - Term 162600 - 162653 -0.3 167 64 Op 1 . - CDS 162853 - 164373 1382 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 168 64 Op 2 7/0.005 - CDS 164319 - 164510 104 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 169 64 Op 3 1/0.185 - CDS 164582 - 164806 378 ## COG5503 Uncharacterized conserved small protein - Prom 164874 - 164933 6.4 - Term 164909 - 164951 9.3 170 65 Tu 1 . - CDS 164970 - 165524 718 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 165546 - 165605 6.5 + Prom 165593 - 165652 7.2 171 66 Tu 1 . + CDS 165757 - 167601 2083 ## COG1217 Predicted membrane GTPase involved in stress response + Term 167613 - 167668 13.2 + Prom 167612 - 167671 9.6 172 67 Op 1 . + CDS 167702 - 168895 1215 ## COG0772 Bacterial cell division membrane protein 173 67 Op 2 . + CDS 168892 - 169224 302 ## lhv_0884 hypothetical protein 174 67 Op 3 14/0.000 + CDS 169221 - 169772 377 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 175 67 Op 4 4/0.036 + CDS 169774 - 170271 326 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 176 67 Op 5 . + CDS 170261 - 171292 399 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 171297 - 171328 1.0 177 68 Tu 1 . + CDS 171370 - 171876 508 ## COG1555 DNA uptake protein and related DNA-binding proteins + Prom 172749 - 172808 7.3 178 69 Tu 1 . + CDS 172977 - 173222 104 ## LBUL_0703 metallo-beta-lactamase superfamily hydrolase + Prom 173584 - 173643 1.8 179 70 Op 1 4/0.036 + CDS 173727 - 174236 485 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 180 70 Op 2 . + CDS 174250 - 175236 838 ## COG1466 DNA polymerase III, delta subunit + Term 175242 - 175289 6.5 - Term 175236 - 175270 3.2 181 71 Tu 1 . - CDS 175289 - 175540 396 ## PROTEIN SUPPORTED gi|227526394|ref|ZP_03956443.1| 30S ribosomal protein S20 - Prom 175574 - 175633 8.0 + Prom 175552 - 175611 7.7 182 72 Tu 1 . + CDS 175758 - 176015 430 ## PROTEIN SUPPORTED gi|227526393|ref|ZP_03956442.1| 30S ribosomal protein S15 + Term 176029 - 176064 5.1 + Prom 176067 - 176126 8.8 183 73 Op 1 . + CDS 176160 - 176918 749 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 184 73 Op 2 . + CDS 176912 - 177898 919 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Term 178052 - 178106 -0.7 + Prom 178136 - 178195 5.9 185 74 Op 1 . + CDS 178240 - 178722 332 ## LAC30SC_04235 hypothetical protein + Prom 178732 - 178791 3.0 186 74 Op 2 . + CDS 178897 - 180087 1368 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 180094 - 180153 6.2 + Prom 180090 - 180149 10.4 187 75 Tu 1 4/0.036 + CDS 180284 - 181597 1989 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) + Term 181605 - 181660 5.0 + Prom 181626 - 181685 3.7 188 76 Op 1 4/0.036 + CDS 181712 - 182995 251 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 189 76 Op 2 . + CDS 182979 - 183566 589 ## COG0218 Predicted GTPase + Term 183567 - 183609 6.0 190 77 Tu 1 . - CDS 183585 - 183725 174 ## - Prom 183751 - 183810 7.4 + Prom 183715 - 183774 5.2 191 78 Op 1 . + CDS 183807 - 184058 317 ## LGAS_0723 p-nitrobenzoate reductase 192 78 Op 2 . + CDS 184080 - 184460 486 ## COG0778 Nitroreductase + Term 184509 - 184559 2.1 + Prom 184780 - 184839 5.4 193 79 Tu 1 . + CDS 184863 - 185051 243 ## gi|238855227|ref|ZP_04645546.1| conserved domain protein 194 80 Tu 1 . - CDS 185243 - 185455 125 ## - Prom 185475 - 185534 3.7 + Prom 185406 - 185465 3.5 195 81 Op 1 . + CDS 185485 - 186492 1042 ## COG2502 Asparagine synthetase A 196 81 Op 2 . + CDS 186542 - 188950 1783 ## COG0474 Cation transport ATPase + Term 188971 - 189037 12.4 - Term 188965 - 189020 1.5 197 82 Op 1 13/0.000 - CDS 189060 - 189767 708 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID - Term 189776 - 189808 -0.1 198 82 Op 2 13/0.000 - CDS 189849 - 190631 882 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 199 82 Op 3 . - CDS 190631 - 191539 965 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 191595 - 191654 4.2 + Prom 191562 - 191621 7.1 200 83 Tu 1 . + CDS 191837 - 192646 592 ## COG2746 Aminoglycoside N3'-acetyltransferase + Term 192811 - 192867 4.4 201 84 Op 1 . - CDS 192853 - 193791 944 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Term 193801 - 193839 5.0 202 84 Op 2 . - CDS 193861 - 195240 1331 ## COG0531 Amino acid transporters - Prom 195277 - 195336 6.8 - Term 195308 - 195366 9.1 203 85 Tu 1 . - CDS 195378 - 195980 250 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 - Prom 196006 - 196065 6.1 + Prom 195962 - 196021 8.4 204 86 Op 1 . + CDS 196079 - 197044 685 ## COG0322 Nuclease subunit of the excinuclease complex 205 86 Op 2 . + CDS 197122 - 197901 778 ## COG0322 Nuclease subunit of the excinuclease complex + Prom 197906 - 197965 5.8 206 87 Op 1 . + CDS 197985 - 199283 1841 ## COG0536 Predicted GTPase 207 87 Op 2 . + CDS 199302 - 201218 1748 ## COG1835 Predicted acyltransferases 208 87 Op 3 4/0.036 + CDS 201234 - 202163 840 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 209 87 Op 4 . + CDS 202167 - 202961 998 ## COG0300 Short-chain dehydrogenases of various substrate specificities 210 87 Op 5 . + CDS 202967 - 203242 283 ## LGAS_0876 hypothetical protein + Term 203272 - 203302 -0.3 211 87 Op 6 . + CDS 203329 - 203514 321 ## PROTEIN SUPPORTED gi|227526363|ref|ZP_03956412.1| 50S ribosomal protein L32 + Term 203521 - 203552 -0.7 212 87 Op 7 . + CDS 203581 - 205146 1747 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 205153 - 205182 -0.2 + Prom 205155 - 205214 4.8 213 88 Op 1 . + CDS 205249 - 205581 234 ## gi|238855209|ref|ZP_04645528.1| hypothetical protein LACJE0001_1189 214 88 Op 2 . + CDS 205590 - 205877 233 ## gi|238855208|ref|ZP_04645527.1| hypothetical protein LACJE0001_1188 + Term 205981 - 206019 6.0 - Term 205967 - 206005 2.2 215 89 Tu 1 . - CDS 206025 - 206228 314 ## LGAS_0879 hypothetical protein - Prom 206278 - 206337 6.9 216 90 Tu 1 . + CDS 206340 - 207719 1547 ## COG0587 DNA polymerase III, alpha subunit + Prom 207724 - 207783 2.7 217 91 Op 1 . + CDS 207812 - 208159 154 ## COG0587 DNA polymerase III, alpha subunit 218 91 Op 2 3/0.062 + CDS 208165 - 209457 953 ## COG0587 DNA polymerase III, alpha subunit + Prom 209475 - 209534 5.1 219 92 Op 1 12/0.000 + CDS 209626 - 210585 1263 ## COG0205 6-phosphofructokinase 220 92 Op 2 . + CDS 210617 - 212386 2275 ## COG0469 Pyruvate kinase + Term 212400 - 212462 10.3 + Prom 212391 - 212450 8.3 221 93 Op 1 . + CDS 212512 - 213390 467 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains 222 93 Op 2 . + CDS 213377 - 214279 665 ## COG4974 Site-specific recombinase XerD 223 93 Op 3 . + CDS 214282 - 214623 351 ## LBA0960 reductase 224 93 Op 4 21/0.000 + CDS 214626 - 215354 615 ## COG1354 Uncharacterized conserved protein 225 93 Op 5 12/0.000 + CDS 215358 - 215948 597 ## COG1386 Predicted transcriptional regulator containing the HTH domain 226 93 Op 6 . + CDS 215959 - 216672 737 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 216777 - 216836 1.7 227 94 Tu 1 . + CDS 216879 - 217451 544 ## COG3601 Predicted membrane protein + Term 217470 - 217496 -1.0 + Prom 217461 - 217520 6.6 228 95 Op 1 . + CDS 217544 - 218062 471 ## gi|238855196|ref|ZP_04645515.1| LysM domain protein 229 95 Op 2 21/0.000 + CDS 218107 - 218772 236 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 + Prom 218787 - 218846 3.9 230 95 Op 3 3/0.062 + CDS 218867 - 220075 2007 ## PROTEIN SUPPORTED gi|238855194|ref|ZP_04645513.1| putative ribosomal protein S1 + Term 220076 - 220128 6.1 231 96 Tu 1 3/0.062 + CDS 220153 - 221463 1576 ## COG1160 Predicted GTPases + Prom 221533 - 221592 4.9 232 97 Tu 1 . + CDS 221683 - 221958 542 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 221965 - 221998 -0.5 233 98 Op 1 . - CDS 222035 - 222940 678 ## COG3464 Transposase and inactivated derivatives 234 98 Op 2 . - CDS 222951 - 223298 99 ## LDBND_0944 transposase - Prom 223385 - 223444 5.9 235 99 Tu 1 . + CDS 223521 - 224771 1436 ## COG0457 FOG: TPR repeat + Term 224773 - 224827 13.3 + Prom 224915 - 224974 6.7 236 100 Tu 1 . + CDS 225009 - 226187 1093 ## COG3328 Transposase and inactivated derivatives + Prom 226212 - 226271 7.5 237 101 Op 1 . + CDS 226377 - 245348 25823 ## LGAS_0942 adhesion exoprotein 238 101 Op 2 . + CDS 245357 - 250567 6377 ## LGAS_0942 adhesion exoprotein 239 102 Op 1 . + CDS 250684 - 251502 892 ## LGAS_0410 adhesion exoprotein 240 102 Op 2 . + CDS 251474 - 261274 12055 ## LGAS_0942 adhesion exoprotein + Term 261300 - 261345 10.0 + Prom 261314 - 261373 10.0 241 103 Op 1 . + CDS 261622 - 264012 2411 ## LJ0382 hypothetical protein 242 103 Op 2 . + CDS 264081 - 270911 7285 ## LGAS_0143 adhesion exoprotein + Term 270922 - 270960 7.2 + Prom 271131 - 271190 8.2 243 104 Tu 1 . + CDS 271396 - 271683 200 ## gi|238855734|ref|ZP_04646029.1| ysirk type signal peptide domain protein + Prom 271831 - 271890 4.1 244 105 Op 1 . + CDS 271950 - 275555 3507 ## LGAS_0143 adhesion exoprotein 245 105 Op 2 . + CDS 275732 - 280249 5490 ## LGAS_0143 adhesion exoprotein + Term 280270 - 280305 4.4 + Prom 280341 - 280400 9.3 246 106 Op 1 . + CDS 280505 - 281464 1180 ## COG1316 Transcriptional regulator 247 106 Op 2 5/0.021 + CDS 281478 - 282350 630 ## COG3944 Capsular polysaccharide biosynthesis protein 248 106 Op 3 3/0.062 + CDS 282357 - 283121 785 ## COG0489 ATPases involved in chromosome partitioning 249 106 Op 4 . + CDS 283123 - 283893 669 ## COG4464 Capsular polysaccharide biosynthesis protein 250 106 Op 5 . + CDS 283921 - 284247 273 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis + Prom 284254 - 284313 2.9 251 106 Op 6 . + CDS 284338 - 284586 90 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis + Prom 284829 - 284888 6.8 252 107 Op 1 . + CDS 285109 - 285393 248 ## LBA1732 galactosyl transferase 253 107 Op 2 6/0.005 + CDS 285394 - 286467 453 ## COG0438 Glycosyltransferase 254 107 Op 3 . + CDS 286486 - 287382 745 ## COG1216 Predicted glycosyltransferases 255 107 Op 4 . + CDS 287413 - 288663 589 ## FI9785_1173 oligosaccharide repeat unit polymerase 256 107 Op 5 1/0.185 + CDS 288660 - 289769 1470 ## COG0562 UDP-galactopyranose mutase 257 107 Op 6 26/0.000 + CDS 289775 - 290947 909 ## COG0438 Glycosyltransferase 258 107 Op 7 . + CDS 290956 - 291942 481 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 259 107 Op 8 . + CDS 291972 - 292283 195 ## LA2_09530 EpsN 260 107 Op 9 . + CDS 292274 - 293410 728 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 261 107 Op 10 . + CDS 293485 - 293700 60 ## gi|238855750|ref|ZP_04646045.1| putative acyltransferase 262 107 Op 11 . + CDS 293643 - 293828 75 ## gi|238855750|ref|ZP_04646045.1| putative acyltransferase + Prom 294178 - 294237 5.0 263 108 Tu 1 . + CDS 294296 - 294499 74 ## gi|238855750|ref|ZP_04646045.1| putative acyltransferase + Term 294521 - 294576 0.3 - Term 294514 - 294561 5.9 264 109 Tu 1 . - CDS 294758 - 295798 190 ## gi|238855751|ref|ZP_04646046.1| hypothetical protein LACJE0001_1529 - Prom 295826 - 295885 11.3 + Prom 295932 - 295991 10.1 265 110 Op 1 . + CDS 296119 - 297297 1093 ## COG3328 Transposase and inactivated derivatives + Prom 297409 - 297468 6.4 266 110 Op 2 . + CDS 297515 - 298024 154 ## Arth_4268 hypothetical protein + Prom 299644 - 299703 4.1 267 111 Op 1 . + CDS 299732 - 299908 200 ## gi|260664544|ref|ZP_05865396.1| predicted protein 268 111 Op 2 . + CDS 299924 - 300712 592 ## HMPREF9243_0879 hypothetical protein 269 111 Op 3 . + CDS 300753 - 301916 205 ## gi|238855107|ref|ZP_04645434.1| hypothetical protein LACJE0001_1610 + Term 302128 - 302162 0.4 + Prom 301955 - 302014 3.9 270 112 Op 1 . + CDS 302191 - 303030 495 ## LCRIS_00802 hypothetical protein 271 112 Op 2 . + CDS 303055 - 303282 248 ## gi|238855109|ref|ZP_04645436.1| hypothetical protein LACJE0001_1612 + Term 303401 - 303454 9.1 - Term 303388 - 303441 9.1 272 113 Tu 1 . - CDS 303443 - 303886 461 ## COG0789 Predicted transcriptional regulators - Prom 303937 - 303996 4.9 + Prom 303893 - 303952 6.0 273 114 Tu 1 . + CDS 303988 - 305022 1341 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Term 305035 - 305074 8.4 + Prom 305891 - 305950 9.1 274 115 Op 1 . + CDS 305980 - 306423 630 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 275 115 Op 2 . + CDS 306471 - 306974 413 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Prom 307136 - 307195 9.9 276 116 Op 1 . + CDS 307291 - 308448 797 ## gi|313472016|ref|ZP_07812508.1| hypothetical protein LBJG_01605 277 116 Op 2 . + CDS 308586 - 308975 258 ## gi|238855937|ref|ZP_04646224.1| conserved hypothetical protein + Term 308980 - 309023 2.3 + Prom 309236 - 309295 5.9 278 117 Tu 1 . + CDS 309378 - 310256 778 ## COG0583 Transcriptional regulator + Prom 310264 - 310323 8.1 279 118 Tu 1 . + CDS 310358 - 310537 311 ## gi|238855935|ref|ZP_04646222.1| conserved domain protein + Term 310633 - 310676 6.2 280 119 Tu 1 . + CDS 310975 - 312429 1505 ## COG0471 Di- and tricarboxylate transporters + Term 312443 - 312492 8.1 281 120 Tu 1 . - CDS 312899 - 313354 315 ## COG0583 Transcriptional regulator - Prom 313424 - 313483 7.4 + Prom 313342 - 313401 5.6 282 121 Tu 1 . + CDS 313483 - 314949 1547 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 314959 - 314997 5.2 + Prom 314964 - 315023 10.1 283 122 Op 1 2/0.118 + CDS 315047 - 316024 328 ## COG1609 Transcriptional regulators 284 122 Op 2 13/0.000 + CDS 316049 - 317062 705 ## COG1609 Transcriptional regulators + Term 317105 - 317135 0.2 + Prom 317168 - 317227 9.9 285 123 Op 1 6/0.005 + CDS 317261 - 318187 818 ## COG0524 Sugar kinases, ribokinase family 286 123 Op 2 9/0.005 + CDS 318187 - 318582 518 ## COG1869 ABC-type ribose transport system, auxiliary component 287 123 Op 3 21/0.000 + CDS 318604 - 320082 201 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 288 123 Op 4 16/0.000 + CDS 320084 - 321040 1073 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 289 123 Op 5 3/0.062 + CDS 321059 - 321574 717 ## COG1879 ABC-type sugar transport system, periplasmic component 290 123 Op 6 . + CDS 321577 - 322044 474 ## COG1879 ABC-type sugar transport system, periplasmic component + Term 322071 - 322123 9.1 - Term 322058 - 322110 1.5 291 124 Op 1 . - CDS 322192 - 323274 914 ## COG3328 Transposase and inactivated derivatives - Prom 323403 - 323462 6.8 292 124 Op 2 . - CDS 323514 - 324221 597 ## COG2188 Transcriptional regulators - Prom 324259 - 324318 9.0 + Prom 324252 - 324311 6.3 293 125 Op 1 . + CDS 324341 - 324850 406 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 294 125 Op 2 8/0.005 + CDS 324910 - 325701 633 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 295 125 Op 3 . + CDS 325713 - 327020 1301 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Prom 327038 - 327097 6.7 296 126 Op 1 . + CDS 327124 - 327990 786 ## EF0617 hypothetical protein 297 126 Op 2 . + CDS 327992 - 328972 1072 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog + Term 328975 - 329030 -0.7 298 127 Op 1 . - CDS 329019 - 330146 775 ## COG2508 Regulator of polyketide synthase expression 299 127 Op 2 . - CDS 330155 - 330664 179 ## gi|313472034|ref|ZP_07812526.1| hypothetical protein LBJG_01608 - Prom 330735 - 330794 7.1 + Prom 330631 - 330690 7.8 300 128 Op 1 . + CDS 330793 - 331380 745 ## COG0078 Ornithine carbamoyltransferase 301 128 Op 2 3/0.062 + CDS 331377 - 331730 387 ## COG0078 Ornithine carbamoyltransferase 302 128 Op 3 . + CDS 331756 - 333255 936 ## COG1288 Predicted membrane protein 303 128 Op 4 . + CDS 333270 - 334124 1074 ## COG1834 N-Dimethylarginine dimethylaminohydrolase 304 128 Op 5 . + CDS 334142 - 335122 849 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 335153 - 335206 10.1 + Prom 335592 - 335651 3.8 305 129 Op 1 . + CDS 335853 - 337184 1085 ## gi|238855494|ref|ZP_04645800.1| conserved hypothetical protein 306 129 Op 2 . + CDS 337229 - 340450 3629 ## COG1404 Subtilisin-like serine proteases 307 129 Op 3 . + CDS 340540 - 341898 1211 ## Apre_1411 sugar-binding domain-containing protein + Term 341947 - 342007 14.9 + Prom 341979 - 342038 11.0 308 130 Tu 1 . + CDS 342099 - 342947 697 ## LCRIS_00802 hypothetical protein + Term 343094 - 343133 -0.1 + Prom 343134 - 343193 9.3 309 131 Tu 1 . + CDS 343316 - 343753 322 ## LDBND_1823 transcriptional regulator + Term 343756 - 343803 2.9 + Prom 343763 - 343822 5.8 310 132 Op 1 10/0.000 + CDS 343858 - 344634 896 ## COG2376 Dihydroxyacetone kinase 311 132 Op 2 10/0.000 + CDS 344643 - 344852 234 ## COG2376 Dihydroxyacetone kinase 312 132 Op 3 9/0.005 + CDS 344866 - 345447 882 ## COG2376 Dihydroxyacetone kinase 313 132 Op 4 1/0.185 + CDS 345447 - 345821 454 ## COG3412 Uncharacterized protein conserved in bacteria 314 132 Op 5 . + CDS 345823 - 346026 281 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 315 132 Op 6 . + CDS 346095 - 346523 313 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 346528 - 346560 3.1 - Term 346894 - 346934 5.1 316 133 Op 1 . - CDS 346953 - 348368 1403 ## COG0471 Di- and tricarboxylate transporters 317 133 Op 2 . - CDS 348381 - 350189 2100 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 350314 - 350373 9.6 + Prom 350286 - 350345 8.0 318 134 Tu 1 . + CDS 350422 - 351303 534 ## COG0583 Transcriptional regulator 319 135 Op 1 . - CDS 351300 - 352610 1332 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 320 135 Op 2 . - CDS 352613 - 353077 455 ## LGAS_0505 succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 353105 - 353164 7.4 + Prom 353179 - 353238 9.4 321 136 Tu 1 . + CDS 353268 - 354158 683 ## COG0583 Transcriptional regulator + Term 354281 - 354334 12.4 - Term 354269 - 354322 12.4 322 137 Op 1 . - CDS 354325 - 356067 1882 ## COG1154 Deoxyxylulose-5-phosphate synthase - Prom 356091 - 356150 8.4 323 137 Op 2 . - CDS 356152 - 356799 728 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) - Prom 356915 - 356974 7.3 + Prom 356900 - 356959 8.7 324 138 Tu 1 . + CDS 357114 - 358925 2356 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 358942 - 358994 11.3 + Prom 358969 - 359028 10.8 325 139 Op 1 . + CDS 359154 - 359348 306 ## PROTEIN SUPPORTED gi|227526303|ref|ZP_03956352.1| 50S ribosomal protein L33 326 139 Op 2 . + CDS 359364 - 360332 952 ## EF0573 hypothetical protein + Term 360373 - 360404 0.1 + Prom 360355 - 360414 11.2 327 140 Op 1 . + CDS 360447 - 361592 1362 ## COG1929 Glycerate kinase + Prom 361600 - 361659 8.9 328 140 Op 2 . + CDS 361740 - 362102 574 ## COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase + Term 362121 - 362157 6.6 - Term 362349 - 362414 18.0 329 141 Op 1 . - CDS 362451 - 362690 352 ## gi|238855184|ref|ZP_04645505.1| conserved domain protein 330 141 Op 2 . - CDS 362718 - 362927 290 ## lhv_0182 hypothetical protein - Prom 363084 - 363143 7.0 + Prom 362884 - 362943 8.6 331 142 Op 1 4/0.036 + CDS 363133 - 366354 3652 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 332 142 Op 2 27/0.000 + CDS 366373 - 368025 2015 ## COG0286 Type I restriction-modification system methyltransferase subunit 333 142 Op 3 . + CDS 368048 - 369085 577 ## COG0732 Restriction endonuclease S subunits + Term 369311 - 369352 -0.8 334 143 Tu 1 . - CDS 369227 - 370405 1093 ## COG3328 Transposase and inactivated derivatives - Prom 370440 - 370499 6.7 + Prom 370893 - 370952 7.2 335 144 Tu 1 . + CDS 371118 - 372230 513 ## COG0732 Restriction endonuclease S subunits + Term 372272 - 372299 0.1 + Prom 372497 - 372556 7.7 336 145 Tu 1 . + CDS 372669 - 373841 513 ## COG0732 Restriction endonuclease S subunits + Term 373879 - 373923 -0.0 + Prom 374114 - 374173 7.0 337 146 Op 1 4/0.036 + CDS 374339 - 374752 102 ## COG0732 Restriction endonuclease S subunits 338 146 Op 2 . + CDS 374695 - 375501 369 ## COG0732 Restriction endonuclease S subunits + Term 375508 - 375542 4.5 - Term 375489 - 375535 7.5 339 147 Op 1 12/0.000 - CDS 375537 - 376091 414 ## COG0582 Integrase 340 147 Op 2 2/0.118 - CDS 376082 - 376459 304 ## COG0582 Integrase 341 147 Op 3 . - CDS 376503 - 377003 260 ## COG0732 Restriction endonuclease S subunits - Prom 377165 - 377224 6.6 + Prom 377880 - 377939 6.1 342 148 Tu 1 . + CDS 377991 - 378287 274 ## PEPE_0527 transcriptional regulator + Term 378309 - 378349 4.4 + Prom 378513 - 378572 8.0 343 149 Op 1 . + CDS 378626 - 379450 284 ## LJ1019 hypothetical protein + Prom 379477 - 379536 4.0 344 149 Op 2 . + CDS 379572 - 380078 550 ## LCRIS_00174 RNA polymerase sigma factor + Term 380255 - 380299 10.0 + Prom 380155 - 380214 7.6 345 150 Op 1 2/0.118 + CDS 380310 - 381188 821 ## COG3711 Transcriptional antiterminator 346 150 Op 2 2/0.118 + CDS 381166 - 381522 380 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 347 150 Op 3 8/0.005 + CDS 381528 - 382937 1107 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 348 150 Op 4 . + CDS 383025 - 384668 1599 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Prom 384673 - 384732 4.0 349 151 Op 1 . + CDS 384791 - 385984 1211 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 350 151 Op 2 . + CDS 385999 - 387885 1916 ## SSUST3_0216 hypothetical protein + Term 387905 - 387948 10.3 + Prom 387935 - 387994 8.8 351 152 Tu 1 . + CDS 388156 - 388689 332 ## TEQUI_0165 AbiQ-like protein + Term 388695 - 388738 10.3 + Prom 388732 - 388791 8.2 352 153 Op 1 . + CDS 388925 - 389161 254 ## LDBND_0912 hypothetical protein 353 153 Op 2 . + CDS 389169 - 390845 2011 ## COG2759 Formyltetrahydrofolate synthetase 354 153 Op 3 15/0.000 + CDS 390845 - 391303 341 ## COG0597 Lipoprotein signal peptidase 355 153 Op 4 . + CDS 391303 - 392208 838 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 356 153 Op 5 24/0.000 + CDS 392216 - 393274 921 ## COG0505 Carbamoylphosphate synthase small subunit 357 153 Op 6 1/0.185 + CDS 393276 - 394109 895 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 358 153 Op 7 . + CDS 394106 - 396448 1713 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Prom 396471 - 396530 6.7 359 154 Tu 1 . + CDS 396551 - 396724 207 ## gi|238854434|ref|ZP_04644774.1| hypothetical protein LACJE0001_0382 + Term 396768 - 396815 12.1 + Prom 396895 - 396954 6.0 360 155 Op 1 . + CDS 396996 - 397175 161 ## gi|238854433|ref|ZP_04644773.1| hypothetical protein LACJE0001_0381 + Prom 397187 - 397246 2.1 361 155 Op 2 . + CDS 397267 - 397542 252 ## gi|256851106|ref|ZP_05556495.1| predicted protein + Term 397769 - 397814 1.2 + Prom 398368 - 398427 8.7 362 156 Tu 1 . + CDS 398453 - 398698 277 ## LGG_02056 phage-related infection protein + Term 398821 - 398862 -0.8 - Term 398600 - 398639 -0.5 363 157 Tu 1 . - CDS 398737 - 399915 1093 ## COG3328 Transposase and inactivated derivatives - Prom 400144 - 400203 6.9 + Prom 400011 - 400070 11.1 364 158 Op 1 . + CDS 400136 - 401059 929 ## COG3600 Uncharacterized phage-associated protein + Prom 401107 - 401166 7.6 365 158 Op 2 . + CDS 401207 - 401386 194 ## gi|313472084|ref|ZP_07812576.1| hypothetical protein LBJG_01544 + Term 401611 - 401662 -0.9 - Term 401605 - 401642 1.1 366 159 Tu 1 . - CDS 401783 - 402538 382 ## COG0582 Integrase - Term 402927 - 402959 2.1 367 160 Op 1 . - CDS 402971 - 403501 483 ## gi|238855031|ref|ZP_04645360.1| hypothetical protein LACJE0001_0539 - Term 403532 - 403571 2.5 368 160 Op 2 . - CDS 403584 - 404099 311 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 404278 - 404337 9.1 + Prom 404338 - 404397 6.3 369 161 Op 1 . + CDS 404423 - 404668 291 ## gi|238855029|ref|ZP_04645358.1| conserved hypothetical protein 370 161 Op 2 . + CDS 404670 - 405521 644 ## COG3645 Uncharacterized phage-encoded protein 371 161 Op 3 . + CDS 405536 - 405856 212 ## gi|238855027|ref|ZP_04645356.1| hypothetical protein LACJE0001_0535 372 161 Op 4 . + CDS 405857 - 406027 248 ## gi|238855026|ref|ZP_04645355.1| hypothetical protein LACJE0001_0534 373 161 Op 5 . + CDS 406041 - 406217 178 ## gi|238855025|ref|ZP_04645354.1| hypothetical protein LACJE0001_0533 374 161 Op 6 . + CDS 406210 - 406734 496 ## gi|238855024|ref|ZP_04645353.1| hypothetical protein LACJE0001_0532 375 161 Op 7 . + CDS 406736 - 407065 346 ## LGAS_0577 phage related protein 376 161 Op 8 . + CDS 407069 - 407425 272 ## gi|238855022|ref|ZP_04645351.1| hypothetical protein LACJE0001_0530 377 161 Op 9 . + CDS 407422 - 407631 237 ## gi|313472094|ref|ZP_07812586.1| hypothetical protein LBJG_00890 378 162 Tu 1 . + CDS 407740 - 408204 219 ## BAA_4145 prophage LambdaBa02, DNA replication protein + Prom 408288 - 408347 2.4 379 163 Op 1 . + CDS 408485 - 408916 377 ## gi|238855020|ref|ZP_04645349.1| hypothetical protein LACJE0001_0528 380 163 Op 2 . + CDS 408900 - 409706 410 ## COG1484 DNA replication protein 381 163 Op 3 . + CDS 409685 - 410176 434 ## COG0629 Single-stranded DNA-binding protein 382 163 Op 4 . + CDS 410186 - 410791 391 ## gi|238855017|ref|ZP_04645346.1| hypothetical protein LACJE0001_0525 + Prom 410818 - 410877 1.9 383 164 Op 1 . + CDS 410907 - 411200 282 ## COG4570 Holliday junction resolvase 384 164 Op 2 . + CDS 411197 - 411721 452 ## gi|238855015|ref|ZP_04645344.1| hypothetical protein LACJE0001_0523 385 164 Op 3 . + CDS 411780 - 411971 78 ## gi|238855014|ref|ZP_04645343.1| hypothetical protein LACJE0001_0522 386 164 Op 4 . + CDS 412040 - 412825 636 ## gi|238855013|ref|ZP_04645342.1| hypothetical protein LACJE0001_0521 387 164 Op 5 . + CDS 412806 - 413051 250 ## gi|238855012|ref|ZP_04645341.1| hypothetical protein LACJE0001_0520 388 164 Op 6 . + CDS 413035 - 413283 310 ## gi|238855011|ref|ZP_04645340.1| hypothetical protein LACJE0001_0519 389 164 Op 7 . + CDS 413249 - 413722 471 ## LJ1443 Lj928 prophage protein 390 164 Op 8 . + CDS 413709 - 414032 351 ## gi|313472106|ref|ZP_07812598.1| hypothetical protein LBJG_00903 + Term 414220 - 414264 4.2 + Prom 414592 - 414651 3.0 391 165 Op 1 . + CDS 414678 - 415424 491 ## COG0286 Type I restriction-modification system methyltransferase subunit 392 165 Op 2 . + CDS 415457 - 415804 264 ## gi|238855009|ref|ZP_04645338.1| conserved hypothetical protein 393 165 Op 3 3/0.062 + CDS 415801 - 416223 434 ## COG1403 Restriction endonuclease + Term 416359 - 416400 2.3 394 166 Op 1 4/0.036 + CDS 416416 - 416949 535 ## COG3747 Phage terminase, small subunit 395 166 Op 2 2/0.118 + CDS 416949 - 418853 1059 ## COG4626 Phage terminase-like protein, large subunit 396 166 Op 3 3/0.062 + CDS 418863 - 420032 986 ## COG4695 Phage-related protein + Term 420057 - 420105 4.6 + Prom 420035 - 420094 6.5 397 167 Op 1 . + CDS 420130 - 421977 1688 ## COG3740 Phage head maturation protease 398 167 Op 2 . + CDS 421998 - 422297 356 ## LAF_0474 hypothetical protein 399 167 Op 3 . + CDS 422281 - 422652 248 ## gi|219563202|ref|YP_002455794.1| head-tail joining protein 400 167 Op 4 . + CDS 422645 - 423103 539 ## gi|313472115|ref|ZP_07812607.1| conserved hypothetical protein 401 167 Op 5 . + CDS 423090 - 423479 314 ## LGG_01529 phage-related tail component 402 167 Op 6 . + CDS 423479 - 424081 762 ## L31473 major tail protein 403 167 Op 7 . + CDS 424156 - 424362 145 ## gi|260665416|ref|ZP_05866263.1| tail protein 404 167 Op 8 . + CDS 424299 - 424769 337 ## gi|238854999|ref|ZP_04645328.1| hypothetical protein LACJE0001_0506 + Prom 424837 - 424896 5.0 405 168 Op 1 . + CDS 424943 - 429577 5015 ## COG5283 Phage-related tail protein 406 168 Op 2 4/0.036 + CDS 429564 - 430304 406 ## COG4722 Phage-related protein 407 168 Op 3 . + CDS 430286 - 433072 2450 ## COG4926 Phage-related protein 408 168 Op 4 . + CDS 433072 - 433290 220 ## gi|313472121|ref|ZP_07812613.1| hypothetical protein LBJG_00919 409 168 Op 5 . + CDS 433244 - 435034 1301 ## LA2_07605 hypothetical protein + Prom 435160 - 435219 2.5 410 169 Op 1 . + CDS 435241 - 435669 452 ## gi|313472123|ref|ZP_07812615.1| conserved hypothetical protein 411 169 Op 2 . + CDS 435692 - 436168 579 ## gi|238854993|ref|ZP_04645322.1| hypothetical protein LACJE0001_0500 412 169 Op 3 . + CDS 436168 - 436362 265 ## gi|238854992|ref|ZP_04645321.1| conserved hypothetical protein 413 169 Op 4 . + CDS 436322 - 436720 332 ## LGAS_0629 hypothetical protein 414 169 Op 5 . + CDS 436739 - 436972 212 ## gi|238854990|ref|ZP_04645319.1| putative upstream stimulatory factor 1 415 169 Op 6 . + CDS 436977 - 437162 209 ## gi|238854989|ref|ZP_04645318.1| hypothetical protein LACJE0001_0496 416 169 Op 7 . + CDS 437152 - 437505 341 ## gi|313472129|ref|ZP_07812621.1| putative phage holin, LL-H family 417 169 Op 8 . + CDS 437540 - 437719 125 ## gi|313472130|ref|ZP_07812622.1| hypothetical protein LBJG_00927 418 169 Op 9 . + CDS 437700 - 438821 1347 ## llmg_2082 bacteriophage lysin + Term 438833 - 438876 6.0 - Term 438970 - 439008 0.2 419 170 Tu 1 . - CDS 439145 - 439636 277 ## COG0675 Transposase and inactivated derivatives - Prom 439692 - 439751 6.8 + Prom 440456 - 440515 4.0 420 171 Tu 1 . + CDS 440604 - 441659 607 ## COG0582 Integrase + Term 441666 - 441700 0.6 + Prom 441702 - 441761 7.7 421 172 Tu 1 . + CDS 441880 - 442248 310 ## LCRIS_01143 transcriptional regulator, xre family + Term 442382 - 442423 2.4 - Term 442014 - 442046 1.4 422 173 Tu 1 . - CDS 442283 - 443425 700 ## LCRIS_01706 hypothetical protein - Prom 443468 - 443527 4.3 - Term 443886 - 443925 6.1 423 174 Tu 1 . - CDS 443931 - 444596 789 ## gi|238854981|ref|ZP_04645310.1| hypothetical protein LACJE0001_0488 - Prom 444636 - 444695 5.7 - Term 444726 - 444783 9.0 424 175 Op 1 . - CDS 444795 - 445262 678 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) 425 175 Op 2 . - CDS 445340 - 445585 315 ## gi|260664465|ref|ZP_05865317.1| predicted protein - Prom 445624 - 445683 7.8 - Term 445648 - 445675 0.1 426 176 Op 1 . - CDS 445685 - 446566 668 ## COG1307 Uncharacterized protein conserved in bacteria 427 176 Op 2 . - CDS 446640 - 447053 423 ## LCRIS_01133 L-fucose operon regulator - Prom 447276 - 447335 6.3 + Prom 447258 - 447317 10.8 428 177 Op 1 . + CDS 447340 - 447654 122 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP 429 177 Op 2 . + CDS 447704 - 449038 1472 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP + Term 449043 - 449094 16.4 - Term 449026 - 449084 11.2 430 178 Op 1 . - CDS 449095 - 449700 913 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Term 449712 - 449743 0.2 431 178 Op 2 . - CDS 449764 - 450699 1182 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase 432 178 Op 3 24/0.000 - CDS 450766 - 453246 2616 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 433 178 Op 4 . - CDS 453259 - 453783 746 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 453804 - 453863 1.8 434 179 Tu 1 . - CDS 454241 - 455200 1161 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 455244 - 455303 2.7 + Prom 455203 - 455262 5.5 435 180 Tu 1 . + CDS 455285 - 455905 437 ## COG0344 Predicted membrane protein + Term 455914 - 455956 10.1 - Term 455894 - 455948 11.0 436 181 Op 1 . - CDS 456067 - 456855 856 ## COG2017 Galactose mutarotase and related enzymes 437 181 Op 2 24/0.000 - CDS 456869 - 458251 1265 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 438 181 Op 3 4/0.036 - CDS 458252 - 458782 832 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 439 181 Op 4 5/0.021 - CDS 458785 - 459693 930 ## COG4974 Site-specific recombinase XerD 440 181 Op 5 . - CDS 459686 - 460123 524 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation 441 181 Op 6 6/0.005 - CDS 460120 - 461004 970 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation - Prom 461034 - 461093 6.4 - Term 461027 - 461082 5.6 442 182 Op 1 13/0.000 - CDS 461104 - 463191 1958 ## COG0550 Topoisomerase IA - Prom 463222 - 463281 6.8 443 182 Op 2 . - CDS 463354 - 464196 606 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 444 182 Op 3 . - CDS 464268 - 465197 455 ## gi|238855694|ref|ZP_04645991.1| putative cell surface protein - Prom 465233 - 465292 1.7 + Prom 465625 - 465684 10.4 445 183 Tu 1 . + CDS 465706 - 466134 353 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 466155 - 466196 5.5 - Term 466151 - 466177 1.0 446 184 Op 1 8/0.005 - CDS 466183 - 466941 652 ## COG0164 Ribonuclease HII 447 184 Op 2 . - CDS 466938 - 467780 972 ## COG1161 Predicted GTPases - Prom 467827 - 467886 9.9 448 185 Tu 1 . - CDS 467901 - 468485 490 ## LBA0977 Na+-H+ antiporter - Prom 468512 - 468571 5.2 449 186 Tu 1 . - CDS 468666 - 469844 1093 ## COG3328 Transposase and inactivated derivatives - Prom 469878 - 469937 6.8 450 187 Op 1 . - CDS 469973 - 470860 299 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters - Term 470872 - 470906 3.6 451 187 Op 2 . - CDS 470907 - 471131 344 ## COG4479 Uncharacterized protein conserved in bacteria - Prom 471158 - 471217 5.8 - Term 471189 - 471225 4.2 452 188 Tu 1 . - CDS 471237 - 472079 929 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 472107 - 472166 2.8 + Prom 472085 - 472144 8.4 453 189 Tu 1 . + CDS 472227 - 472463 199 ## LAC30SC_04900 hemolysin III + Term 472534 - 472595 3.0 + Prom 472488 - 472547 7.5 454 190 Tu 1 . + CDS 472681 - 472890 224 ## COG1272 Predicted membrane protein, hemolysin III homolog + Term 472901 - 472948 4.4 - Term 473027 - 473056 0.5 455 191 Tu 1 . - CDS 473154 - 474344 1310 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - Prom 474386 - 474445 6.6 + Prom 474345 - 474404 14.0 456 192 Tu 1 . + CDS 474430 - 475335 711 ## COG1284 Uncharacterized conserved protein + Term 475576 - 475608 -0.1 + Prom 476113 - 476172 6.7 457 193 Tu 1 . + CDS 476207 - 477385 1084 ## COG3328 Transposase and inactivated derivatives - Term 477260 - 477301 -0.8 458 194 Op 1 . - CDS 477510 - 477659 98 ## gi|313472162|ref|ZP_07812654.1| hypothetical protein LBJG_01623 459 194 Op 2 . - CDS 477696 - 479330 2422 ## gi|313472163|ref|ZP_07812655.1| LPXTG cell wall surface anchor family protein 460 194 Op 3 . - CDS 479358 - 479591 422 ## gi|260664439|ref|ZP_05865291.1| conserved hypothetical protein - Prom 479658 - 479717 10.1 - Term 479690 - 479729 3.0 461 195 Op 1 . - CDS 479778 - 480221 448 ## gi|238854619|ref|ZP_04644949.1| hypothetical protein LACJE0001_0581 462 195 Op 2 . - CDS 480259 - 481446 1280 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 463 195 Op 3 . - CDS 481434 - 482039 541 ## LCRIS_01101 phosphohydrolase 464 195 Op 4 . - CDS 481985 - 482677 455 ## COG1409 Predicted phosphohydrolases 465 195 Op 5 . - CDS 482697 - 483824 1046 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 483846 - 483905 5.7 466 196 Op 1 . - CDS 484296 - 484706 462 ## LDBND_0909 cell division initiation protein - Prom 484727 - 484786 8.7 - Term 484736 - 484774 2.2 467 196 Op 2 . - CDS 484806 - 485372 542 ## COG4474 Uncharacterized protein conserved in bacteria - Prom 485430 - 485489 2.6 + Prom 485389 - 485448 7.6 468 197 Op 1 7/0.005 + CDS 485526 - 486146 224 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 469 197 Op 2 . + CDS 486147 - 488474 2186 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 488510 - 488554 10.1 - Term 488611 - 488648 -0.7 470 198 Tu 1 . - CDS 488659 - 489417 623 ## COG2746 Aminoglycoside N3'-acetyltransferase 471 199 Op 1 6/0.005 - CDS 489482 - 490123 759 ## COG0177 Predicted EndoIII-related endonuclease 472 199 Op 2 4/0.036 - CDS 490123 - 490758 543 ## COG3935 Putative primosome component and related proteins - Term 490777 - 490809 -0.9 473 199 Op 3 . - CDS 490824 - 492122 1463 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases 474 199 Op 4 . - CDS 492200 - 492691 542 ## LCRIS_01170 hypothetical protein 475 199 Op 5 . - CDS 492675 - 495179 2031 ## COG1199 Rad3-related DNA helicases 476 199 Op 6 . - CDS 495176 - 495490 376 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases - Prom 495524 - 495583 5.3 477 200 Op 1 8/0.005 - CDS 495605 - 499126 2936 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 478 200 Op 2 . - CDS 499119 - 501311 1755 ## COG3857 ATP-dependent nuclease, subunit B 479 200 Op 3 . - CDS 501332 - 502573 911 ## COG3857 ATP-dependent nuclease, subunit B + Prom 502521 - 502580 5.1 480 201 Op 1 . + CDS 502629 - 503126 445 ## COG1577 Mevalonate kinase 481 201 Op 2 5/0.021 + CDS 503156 - 503542 402 ## COG1577 Mevalonate kinase 482 201 Op 3 5/0.021 + CDS 503542 - 504504 784 ## COG3407 Mevalonate pyrophosphate decarboxylase 483 201 Op 4 3/0.062 + CDS 504543 - 505631 948 ## COG1577 Mevalonate kinase + Term 505751 - 505789 0.0 + Prom 505740 - 505799 3.8 484 202 Tu 1 . + CDS 505819 - 506652 934 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 506658 - 506685 0.1 - Term 506646 - 506673 0.1 485 203 Op 1 . - CDS 506721 - 508109 1086 ## COG0144 tRNA and rRNA cytosine-C5-methylases 486 203 Op 2 . - CDS 508102 - 509073 633 ## lhv_1280 hypothetical protein 487 203 Op 3 . - CDS 509063 - 509785 661 ## lhv_1281 hypothetical protein + Prom 509789 - 509848 8.0 488 204 Op 1 . + CDS 509943 - 510449 563 ## COG0681 Signal peptidase I 489 204 Op 2 . + CDS 510521 - 510706 228 ## LCRIS_01185 hypothetical protein + Term 510718 - 510753 6.0 - Term 510706 - 510741 6.0 490 205 Tu 1 . - CDS 510746 - 511363 466 ## COG1266 Predicted metal-dependent membrane protease - Prom 511418 - 511477 3.8 491 206 Op 1 . - CDS 511493 - 512188 361 ## gi|238854645|ref|ZP_04644975.1| hypothetical protein LACJE0001_0608 492 206 Op 2 . - CDS 512263 - 513060 576 ## LBA1187 hypothetical protein 493 206 Op 3 . - CDS 513075 - 513887 371 ## gi|238854647|ref|ZP_04644977.1| conserved hypothetical protein 494 206 Op 4 8/0.005 - CDS 513887 - 514588 177 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 495 206 Op 5 . - CDS 514588 - 514956 354 ## COG1725 Predicted transcriptional regulators - Prom 515186 - 515245 8.7 - Term 515069 - 515122 7.2 496 207 Op 1 . - CDS 515250 - 516488 1764 ## COG2195 Di- and tripeptidases 497 207 Op 2 . - CDS 516505 - 517302 1140 ## COG0327 Uncharacterized conserved protein 498 207 Op 3 . - CDS 517295 - 517594 312 ## lhv_1293 putative methyltransferase 499 207 Op 4 5/0.021 - CDS 517639 - 517983 533 ## COG2384 Predicted SAM-dependent methyltransferase - Term 518007 - 518033 -0.7 500 207 Op 5 . - CDS 518046 - 518852 890 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 501 207 Op 6 . - CDS 518867 - 519139 290 ## Ldb1246 RNA polymerase sigma factor RpoD 502 207 Op 7 . - CDS 519152 - 519349 206 ## gi|238854654|ref|ZP_04644984.1| DNA primase - Prom 519395 - 519454 5.3 503 208 Op 1 . - CDS 519694 - 520938 1138 ## COG0358 DNA primase (bacterial type) 504 208 Op 2 19/0.000 - CDS 520989 - 523055 2509 ## COG0751 Glycyl-tRNA synthetase, beta subunit 505 208 Op 3 3/0.062 - CDS 523048 - 523965 1071 ## COG0752 Glycyl-tRNA synthetase, alpha subunit - Prom 524002 - 524061 3.8 - Term 523987 - 524020 4.0 506 209 Op 1 16/0.000 - CDS 524209 - 524964 630 ## COG1381 Recombinational DNA repair protein (RecF pathway) 507 209 Op 2 6/0.005 - CDS 524964 - 525872 1045 ## COG1159 GTPase 508 209 Op 3 1/0.185 - CDS 525856 - 526278 481 ## COG0295 Cytidine deaminase 509 209 Op 4 17/0.000 - CDS 526278 - 526802 618 ## COG0319 Predicted metal-dependent hydrolase 510 209 Op 5 1/0.185 - CDS 526802 - 527755 1083 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 511 209 Op 6 . - CDS 527776 - 528237 397 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 - Term 528258 - 528298 7.3 512 210 Op 1 . - CDS 528309 - 528485 292 ## PROTEIN SUPPORTED gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 513 210 Op 2 . - CDS 528448 - 528567 217 ## PROTEIN SUPPORTED gi|239632784|ref|ZP_04675815.1| SSU ribosomal protein S21P - Prom 528602 - 528661 9.1 + Prom 528547 - 528606 5.3 514 211 Tu 1 . + CDS 528631 - 529455 792 ## COG1806 Uncharacterized protein conserved in bacteria + Term 529460 - 529504 7.5 - Term 529441 - 529497 1.5 515 212 Op 1 2/0.118 - CDS 529503 - 529754 340 ## COG1284 Uncharacterized conserved protein 516 212 Op 2 . - CDS 529793 - 530380 698 ## COG1284 Uncharacterized conserved protein 517 212 Op 3 5/0.021 - CDS 530458 - 530988 727 ## COG0225 Peptide methionine sulfoxide reductase 518 212 Op 4 1/0.185 - CDS 530988 - 531428 485 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase - Prom 531448 - 531507 2.9 - Term 531463 - 531500 2.0 519 213 Op 1 . - CDS 531510 - 532757 1256 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 520 213 Op 2 . - CDS 532841 - 533119 84 ## LGAS_1058 ABC-type multidrug transport system, ATPase and permease component - Prom 533268 - 533327 8.0 - Term 533285 - 533341 12.0 521 214 Op 1 13/0.000 - CDS 533343 - 535175 2335 ## COG0173 Aspartyl-tRNA synthetase 522 214 Op 2 . - CDS 535193 - 536473 1508 ## COG0124 Histidyl-tRNA synthetase - Prom 536500 - 536559 6.6 - Term 536502 - 536543 3.4 523 215 Op 1 7/0.005 - CDS 536793 - 537179 333 ## COG1490 D-Tyr-tRNAtyr deacylase 524 215 Op 2 1/0.185 - CDS 537179 - 538324 1261 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 525 215 Op 3 . - CDS 538300 - 539415 1035 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Prom 539436 - 539495 4.7 526 216 Op 1 . - CDS 539538 - 539810 220 ## gi|238854673|ref|ZP_04645003.1| conserved hypothetical protein 527 216 Op 2 . - CDS 539855 - 540613 408 ## PROTEIN SUPPORTED gi|15672085|ref|NP_266259.1| ribosomal protein L11 methyltransferase 528 216 Op 3 . - CDS 540649 - 540798 65 ## gi|238854674|ref|ZP_04645004.1| ribosomal protein L11 methyltransferase - Prom 540831 - 540890 4.5 + Prom 540728 - 540787 4.8 529 217 Tu 1 . + CDS 540864 - 541370 542 ## COG2606 Uncharacterized conserved protein + Term 541387 - 541448 9.2 - Term 541369 - 541435 7.4 530 218 Op 1 . - CDS 541445 - 542803 1384 ## COG2966 Uncharacterized conserved protein 531 218 Op 2 1/0.185 - CDS 542803 - 543627 623 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase - Prom 543674 - 543733 10.5 - Term 543695 - 543733 7.2 532 219 Op 1 6/0.005 - CDS 543798 - 545354 2101 ## COG3051 Citrate lyase, alpha subunit 533 219 Op 2 6/0.005 - CDS 545326 - 546240 1196 ## COG2301 Citrate lyase beta subunit 534 219 Op 3 5/0.021 - CDS 546241 - 546534 408 ## COG3052 Citrate lyase, gamma subunit 535 219 Op 4 . - CDS 546524 - 547579 744 ## COG3053 Citrate lyase synthetase - Prom 547634 - 547693 7.4 + Prom 547583 - 547642 6.3 536 220 Tu 1 . + CDS 547775 - 548725 879 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain + Term 548732 - 548773 2.2 - Term 548599 - 548652 10.6 537 221 Op 1 . - CDS 548726 - 549517 611 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Term 549521 - 549557 4.3 538 221 Op 2 . - CDS 549564 - 550487 1199 ## COG0039 Malate/lactate dehydrogenases 539 221 Op 3 . - CDS 550513 - 551649 1439 ## COG2055 Malate/L-lactate dehydrogenases - Prom 551686 - 551745 6.5 540 221 Op 4 . - CDS 551747 - 552286 514 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) - Prom 552315 - 552374 7.3 541 222 Tu 1 . - CDS 552456 - 553394 698 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 553558 - 553617 5.8 - Term 553587 - 553623 2.1 542 223 Tu 1 . - CDS 553640 - 555094 1958 ## COG0471 Di- and tricarboxylate transporters - Prom 555173 - 555232 10.3 - Term 555296 - 555353 14.4 543 224 Tu 1 . - CDS 555446 - 556780 822 ## COG0471 Di- and tricarboxylate transporters - Prom 556877 - 556936 4.8 - Term 556904 - 556944 5.4 544 225 Op 1 . - CDS 556958 - 558349 2102 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 545 225 Op 2 . - CDS 558367 - 559770 1983 ## COG0114 Fumarase - Prom 559816 - 559875 7.6 - Term 559894 - 559930 2.1 546 226 Op 1 32/0.000 - CDS 559943 - 560644 929 ## COG2011 ABC-type metal ion transport system, permease component 547 226 Op 2 10/0.000 - CDS 560637 - 561695 1087 ## COG1135 ABC-type metal ion transport system, ATPase component 548 226 Op 3 . - CDS 561705 - 562556 1126 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Prom 562819 - 562878 9.8 549 227 Tu 1 . + CDS 562952 - 563317 556 ## COG1970 Large-conductance mechanosensitive channel + Prom 563341 - 563400 8.9 550 228 Op 1 . + CDS 563431 - 564036 578 ## LGAS_0843 hypothetical protein 551 228 Op 2 . + CDS 564036 - 564899 754 ## LAF_1832 hypothetical protein + Term 564910 - 564963 8.1 - Term 564897 - 564950 8.1 552 229 Op 1 . - CDS 564958 - 565887 1033 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 565913 - 565972 6.2 553 229 Op 2 . - CDS 565984 - 566400 395 ## LJ0167 hypothetical protein 554 229 Op 3 16/0.000 - CDS 566410 - 566913 472 ## COG0262 Dihydrofolate reductase 555 229 Op 4 . - CDS 566923 - 567879 981 ## COG0207 Thymidylate synthase - Prom 567948 - 568007 11.2 + Prom 567907 - 567966 7.8 556 230 Tu 1 . + CDS 567986 - 568858 998 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Term 568879 - 568927 8.1 - Term 568873 - 568906 5.1 557 231 Op 1 3/0.062 - CDS 568913 - 570295 1636 ## COG1113 Gamma-aminobutyrate permease and related permeases 558 231 Op 2 . - CDS 570282 - 571646 1310 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 571676 - 571735 3.7 - Term 571682 - 571737 1.1 559 232 Tu 1 . - CDS 571789 - 572475 553 ## COG1811 Uncharacterized membrane protein, possible Na+ channel or pump - Prom 572513 - 572572 7.7 + Prom 572498 - 572557 10.0 560 233 Tu 1 . + CDS 572662 - 574200 1721 ## SMU.739c hypothetical protein + Term 574371 - 574411 0.6 - Term 574392 - 574440 2.3 561 234 Op 1 1/0.185 - CDS 574441 - 575352 286 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase - Term 575364 - 575398 4.0 562 234 Op 2 . - CDS 575406 - 576890 1549 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 576928 - 576987 7.1 563 235 Op 1 . - CDS 577031 - 578263 1179 ## COG0477 Permeases of the major facilitator superfamily 564 235 Op 2 . - CDS 578292 - 579572 1060 ## LPST_C2844 alpha-L-rhamnosidase (putative) - Prom 579598 - 579657 2.4 - Term 579675 - 579711 1.5 565 236 Op 1 . - CDS 579865 - 580443 498 ## LPST_C2845 sugar transport protein 566 236 Op 2 . - CDS 580425 - 580652 87 ## Lbuc_2198 major facilitator superfamily protein 567 236 Op 3 . - CDS 580625 - 580891 137 ## LPST_C2845 sugar transport protein 568 236 Op 4 . - CDS 580915 - 581148 372 ## LPST_C2845 sugar transport protein - Prom 581224 - 581283 7.4 569 237 Tu 1 . + CDS 581252 - 582289 541 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 582293 - 582333 6.2 - Term 582275 - 582327 10.1 570 238 Op 1 . - CDS 582349 - 583200 914 ## LBA1470 hypothetical protein 571 238 Op 2 . - CDS 583287 - 583883 449 ## LCRIS_01582 glycoside hydrolase 572 238 Op 3 . - CDS 583896 - 585113 1108 ## COG0477 Permeases of the major facilitator superfamily - Prom 585151 - 585210 7.8 + Prom 585208 - 585267 6.8 573 239 Tu 1 . + CDS 585314 - 586270 616 ## COG1609 Transcriptional regulators + Term 586274 - 586316 10.5 - Term 586260 - 586304 7.1 574 240 Op 1 . - CDS 586319 - 587206 786 ## COG0657 Esterase/lipase 575 240 Op 2 . - CDS 587216 - 588562 1248 ## COG2190 Phosphotransferase system IIA components 576 240 Op 3 . - CDS 588577 - 589317 751 ## COG2407 L-fucose isomerase and related proteins 577 240 Op 4 . - CDS 589260 - 590021 722 ## COG2407 L-fucose isomerase and related proteins - Prom 590058 - 590117 6.4 578 241 Tu 1 . - CDS 590128 - 590376 273 ## COG1609 Transcriptional regulators 579 242 Tu 1 . - CDS 590493 - 590939 405 ## LBA1488 ribose operon repressor - Prom 591158 - 591217 5.1 + Prom 591185 - 591244 5.4 580 243 Op 1 12/0.000 + CDS 591272 - 592105 973 ## COG3959 Transketolase, N-terminal subunit 581 243 Op 2 2/0.118 + CDS 592098 - 593042 939 ## COG3958 Transketolase, C-terminal subunit 582 243 Op 3 1/0.185 + CDS 593057 - 593257 208 ## COG0554 Glycerol kinase 583 243 Op 4 . + CDS 593278 - 594504 889 ## COG0554 Glycerol kinase + Term 594535 - 594577 8.0 - Term 595226 - 595279 2.2 584 244 Tu 1 . - CDS 595341 - 595538 108 ## - TRNA 595450 - 595536 67.7 # Ser CGA 0 0 585 245 Tu 1 . + CDS 595596 - 596201 434 ## LJ1417 hypothetical protein + Term 596223 - 596272 4.0 586 246 Op 1 . - CDS 596721 - 596909 195 ## COG1307 Uncharacterized protein conserved in bacteria 587 246 Op 2 . - CDS 596834 - 597550 407 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 597800 - 597859 5.2 + Prom 597349 - 597408 6.0 588 247 Op 1 . + CDS 597627 - 598175 386 ## LAF_0389 hypothetical protein 589 247 Op 2 1/0.185 + CDS 598238 - 599056 767 ## COG0474 Cation transport ATPase 590 247 Op 3 . + CDS 599071 - 600513 1317 ## COG0474 Cation transport ATPase + Term 600539 - 600574 5.1 - Term 600525 - 600560 5.1 591 248 Op 1 7/0.005 - CDS 600577 - 601104 646 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 592 248 Op 2 1/0.185 - CDS 601122 - 602357 874 ## COG0608 Single-stranded DNA-specific exonuclease 593 248 Op 3 . - CDS 602360 - 603382 839 ## COG0608 Single-stranded DNA-specific exonuclease 594 248 Op 4 . - CDS 603382 - 604092 612 ## COG3764 Sortase (surface protein transpeptidase) 595 248 Op 5 . - CDS 604094 - 605932 1932 ## COG0481 Membrane GTPase LepA - Prom 606010 - 606069 9.4 - Term 606064 - 606105 5.4 596 249 Op 1 31/0.000 - CDS 606109 - 607245 1516 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain 597 249 Op 2 29/0.000 - CDS 607318 - 609168 2531 ## COG0443 Molecular chaperone 598 249 Op 3 21/0.000 - CDS 609223 - 609594 526 ## COG0576 Molecular chaperone GrpE (heat shock protein) 599 249 Op 4 . - CDS 609817 - 610272 464 ## COG1420 Transcriptional regulator of heat shock gene - Term 610274 - 610305 -0.5 600 249 Op 5 . - CDS 610320 - 610859 446 ## COG1420 Transcriptional regulator of heat shock gene - Prom 610915 - 610974 5.1 601 250 Op 1 12/0.000 - CDS 610978 - 611916 542 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 602 250 Op 2 26/0.000 - CDS 611935 - 612822 694 ## COG0130 Pseudouridine synthase - Term 612830 - 612855 -0.5 603 250 Op 3 32/0.000 - CDS 612859 - 613131 191 ## COG0858 Ribosome-binding factor A - Prom 613152 - 613211 1.8 604 250 Op 4 10/0.000 - CDS 613226 - 615916 3039 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 605 250 Op 5 8/0.005 - CDS 615921 - 616232 485 ## PROTEIN SUPPORTED gi|238854740|ref|ZP_04645070.1| ribosomal protein HS6-type 606 250 Op 6 22/0.000 - CDS 616233 - 616463 74 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 607 250 Op 7 32/0.000 - CDS 616538 - 617644 724 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 608 250 Op 8 4/0.036 - CDS 617664 - 618173 520 ## COG0779 Uncharacterized protein conserved in bacteria 609 250 Op 9 5/0.021 - CDS 618236 - 622453 3695 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) - Prom 622477 - 622536 2.8 610 251 Op 1 7/0.005 - CDS 622566 - 624263 1884 ## COG0442 Prolyl-tRNA synthetase 611 251 Op 2 . - CDS 624283 - 625287 837 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 612 251 Op 3 12/0.000 - CDS 625353 - 625535 131 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 613 251 Op 4 32/0.000 - CDS 625538 - 626344 710 ## COG0575 CDP-diglyceride synthetase 614 251 Op 5 1/0.185 - CDS 626356 - 626721 391 ## COG0020 Undecaprenyl pyrophosphate synthase 615 251 Op 6 19/0.000 - CDS 626739 - 627068 246 ## COG0020 Undecaprenyl pyrophosphate synthase 616 251 Op 7 33/0.000 - CDS 627072 - 627629 874 ## COG0233 Ribosome recycling factor 617 251 Op 8 . - CDS 627629 - 627763 113 ## COG0528 Uridylate kinase 618 251 Op 9 24/0.000 - CDS 627769 - 628353 880 ## COG0528 Uridylate kinase - Prom 628412 - 628471 5.9 - Term 628438 - 628468 2.0 619 251 Op 10 38/0.000 - CDS 628480 - 629355 574 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 620 251 Op 11 . - CDS 629391 - 630164 1314 ## PROTEIN SUPPORTED gi|238854752|ref|ZP_04645082.1| ribosomal protein S2 - Prom 630255 - 630314 5.4 621 252 Tu 1 . - CDS 630338 - 631348 754 ## COG4123 Predicted O-methyltransferase - Prom 631507 - 631566 5.3 + Prom 631268 - 631327 6.2 622 253 Tu 1 . + CDS 631412 - 632026 602 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 632031 - 632057 -1.0 - Term 632018 - 632044 -1.0 623 254 Op 1 35/0.000 - CDS 632052 - 633836 216 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 624 254 Op 2 . - CDS 633829 - 635583 211 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - Prom 635603 - 635662 4.4 - Term 635612 - 635646 3.2 625 255 Op 1 . - CDS 635673 - 635894 413 ## COG3763 Uncharacterized protein conserved in bacteria 626 255 Op 2 . - CDS 635912 - 636160 343 ## LCRIS_01293 hypothetical protein - Prom 636180 - 636239 7.0 + Prom 636214 - 636273 6.8 627 256 Tu 1 . + CDS 636299 - 636934 914 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 636943 - 636979 3.5 - Term 636975 - 637019 7.2 628 257 Tu 1 . - CDS 637042 - 638988 2564 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 639036 - 639095 7.0 + Prom 638995 - 639054 8.5 629 258 Tu 1 . + CDS 639230 - 640069 865 ## COG1621 Beta-fructosidases (levanase/invertase) 630 259 Op 1 5/0.021 + CDS 640395 - 640679 180 ## COG1621 Beta-fructosidases (levanase/invertase) 631 259 Op 2 2/0.118 + CDS 640679 - 640864 136 ## COG1609 Transcriptional regulators + Prom 640878 - 640937 5.3 632 260 Tu 1 . + CDS 641011 - 641478 342 ## COG1609 Transcriptional regulators + Term 641695 - 641722 0.1 - Term 641666 - 641722 6.4 633 261 Op 1 33/0.000 - CDS 641728 - 642075 578 ## PROTEIN SUPPORTED gi|227526078|ref|ZP_03956127.1| 50S ribosomal protein L19 634 261 Op 2 30/0.000 - CDS 642182 - 642637 529 ## COG0336 tRNA-(guanine-N1)-methyltransferase - Prom 642665 - 642724 5.8 635 261 Op 3 12/0.000 - CDS 642901 - 643413 526 ## COG0806 RimM protein, required for 16S rRNA processing - Term 643429 - 643470 6.7 636 261 Op 4 23/0.000 - CDS 643484 - 643756 463 ## PROTEIN SUPPORTED gi|227526075|ref|ZP_03956124.1| ribosomal protein S16 - Prom 643784 - 643843 6.9 637 261 Op 5 8/0.005 - CDS 643846 - 645273 1749 ## COG0541 Signal recognition particle GTPase 638 261 Op 6 . - CDS 645278 - 645613 337 ## COG2739 Uncharacterized protein conserved in bacteria - Term 645637 - 645668 1.0 639 261 Op 7 . - CDS 645684 - 645917 264 ## gi|238854769|ref|ZP_04645099.1| hypothetical protein LACJE0001_0733 - Prom 646020 - 646079 7.9 + Prom 645980 - 646039 6.6 640 262 Tu 1 . + CDS 646059 - 646502 391 ## COG2461 Uncharacterized conserved protein + Term 646581 - 646626 7.6 - Term 646566 - 646617 10.6 641 263 Op 1 . - CDS 646624 - 647865 1507 ## COG4690 Dipeptidase - Prom 647961 - 648020 2.8 642 263 Op 2 . - CDS 648058 - 648357 292 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 643 263 Op 3 . - CDS 648330 - 648959 512 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 644 263 Op 4 . - CDS 648869 - 649369 509 ## gi|238854772|ref|ZP_04645102.1| cell division protein FtsY 645 263 Op 5 1/0.185 - CDS 649369 - 650574 1223 ## COG1196 Chromosome segregation ATPases 646 263 Op 6 6/0.005 - CDS 650592 - 652895 2404 ## COG1196 Chromosome segregation ATPases 647 263 Op 7 . - CDS 652945 - 653229 283 ## COG0571 dsRNA-specific ribonuclease 648 263 Op 8 . - CDS 653277 - 653636 401 ## COG0571 dsRNA-specific ribonuclease - Prom 653656 - 653715 4.2 - Term 653675 - 653703 -1.0 649 264 Op 1 3/0.062 - CDS 653721 - 655067 1522 ## COG0747 ABC-type dipeptide transport system, periplasmic component 650 264 Op 2 3/0.062 - CDS 655019 - 655498 472 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 655585 - 655644 14.3 - Term 655609 - 655653 10.2 651 265 Tu 1 5/0.021 - CDS 655684 - 657444 1873 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 657688 - 657747 10.0 - Term 657730 - 657770 6.1 652 266 Op 1 49/0.000 - CDS 657782 - 658696 995 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 653 266 Op 2 6/0.005 - CDS 658711 - 659670 1158 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 654 266 Op 3 44/0.000 - CDS 659672 - 660643 745 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 655 266 Op 4 . - CDS 660644 - 661660 1056 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component - Prom 661683 - 661742 6.6 656 267 Op 1 3/0.062 - CDS 661775 - 662014 374 ## COG0236 Acyl carrier protein 657 267 Op 2 . - CDS 662072 - 663076 1176 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 658 267 Op 3 4/0.036 - CDS 663085 - 665109 1394 ## COG1200 RecG-like helicase 659 267 Op 4 9/0.005 - CDS 665114 - 666730 1895 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 660 267 Op 5 . - CDS 666791 - 667153 520 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 667259 - 667318 8.3 + Prom 667237 - 667296 5.8 661 268 Tu 1 . + CDS 667330 - 667515 312 ## PROTEIN SUPPORTED gi|238854787|ref|ZP_04645117.1| ribosomal protein L28 + Term 667543 - 667588 11.2 - Term 667538 - 667569 3.4 662 269 Op 1 6/0.005 - CDS 667584 - 668258 665 ## COG1564 Thiamine pyrophosphokinase 663 269 Op 2 10/0.000 - CDS 668245 - 668907 731 ## COG0036 Pentose-5-phosphate-3-epimerase 664 269 Op 3 7/0.005 - CDS 668941 - 669828 609 ## COG1162 Predicted GTPases 665 269 Op 4 4/0.036 - CDS 669825 - 670418 603 ## COG2815 Uncharacterized protein conserved in bacteria - Prom 670485 - 670544 2.2 666 270 Op 1 17/0.000 - CDS 670562 - 671821 1437 ## COG0515 Serine/threonine protein kinase 667 270 Op 2 3/0.062 - CDS 671818 - 672567 688 ## COG0631 Serine/threonine protein phosphatase 668 270 Op 3 . - CDS 672573 - 673442 667 ## COG0144 tRNA and rRNA cytosine-C5-methylases - Prom 673466 - 673525 2.7 669 271 Op 1 20/0.000 - CDS 673619 - 673885 302 ## COG0144 tRNA and rRNA cytosine-C5-methylases 670 271 Op 2 4/0.036 - CDS 673878 - 674822 1131 ## COG0223 Methionyl-tRNA formyltransferase 671 271 Op 3 1/0.185 - CDS 674839 - 676293 1122 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 672 272 Tu 1 3/0.062 - CDS 676698 - 677231 591 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Term 677238 - 677275 5.1 673 273 Op 1 25/0.000 - CDS 677283 - 677501 362 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 674 273 Op 2 . - CDS 677505 - 678119 716 ## COG0194 Guanylate kinase - Prom 678142 - 678201 4.1 + Prom 678214 - 678273 7.0 675 274 Tu 1 . + CDS 678329 - 678634 333 ## gi|238854798|ref|ZP_04645128.1| conserved hypothetical protein + Term 678646 - 678693 -0.6 - Term 678628 - 678687 10.1 676 275 Op 1 . - CDS 678689 - 680374 1853 ## COG0497 ATPase involved in DNA repair 677 275 Op 2 3/0.062 - CDS 680388 - 681200 792 ## COG1189 Predicted rRNA methylase 678 275 Op 3 22/0.000 - CDS 681200 - 681961 830 ## COG0142 Geranylgeranyl pyrophosphate synthase 679 275 Op 4 14/0.000 - CDS 682067 - 682309 400 ## COG1722 Exonuclease VII small subunit - Prom 682386 - 682445 5.3 680 275 Op 5 7/0.005 - CDS 682451 - 683659 1019 ## COG1570 Exonuclease VII, large subunit 681 275 Op 6 4/0.036 - CDS 683646 - 684497 890 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Term 684509 - 684539 3.0 682 275 Op 7 10/0.000 - CDS 684544 - 684945 486 ## COG0781 Transcription termination factor 683 275 Op 8 4/0.036 - CDS 684945 - 685391 553 ## COG1302 Uncharacterized protein conserved in bacteria 684 275 Op 9 10/0.000 - CDS 685416 - 685985 753 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 685 275 Op 10 . - CDS 686054 - 687160 1160 ## COG0006 Xaa-Pro aminopeptidase - Term 687172 - 687210 6.1 686 276 Op 1 32/0.000 - CDS 687225 - 687524 511 ## PROTEIN SUPPORTED gi|227526027|ref|ZP_03956076.1| 50S ribosomal protein L27 687 276 Op 2 . - CDS 687543 - 687905 603 ## PROTEIN SUPPORTED gi|239632610|ref|ZP_04675641.1| ribosomal protein L21 - Prom 687963 - 688022 6.3 + Prom 687962 - 688021 5.8 688 277 Tu 1 . + CDS 688061 - 688327 197 ## - Term 688046 - 688085 -1.0 689 278 Tu 1 . - CDS 688287 - 688607 226 ## COG1814 Uncharacterized membrane protein - Prom 688644 - 688703 3.6 690 279 Op 1 6/0.005 - CDS 688707 - 690110 1609 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 691 279 Op 2 19/0.000 - CDS 690110 - 690553 509 ## COG0822 NifU homolog involved in Fe-S cluster formation 692 279 Op 3 1/0.185 - CDS 690543 - 691028 375 ## COG0520 Selenocysteine lyase 693 279 Op 4 24/0.000 - CDS 691034 - 691738 628 ## COG0520 Selenocysteine lyase 694 279 Op 5 41/0.000 - CDS 691728 - 692957 1561 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 695 279 Op 6 . - CDS 692969 - 693760 1082 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component - Prom 693797 - 693856 5.9 - Term 693859 - 693897 1.6 696 280 Tu 1 . - CDS 693898 - 694221 476 ## gi|260664696|ref|ZP_05865548.1| predicted protein - Prom 694262 - 694321 2.0 697 281 Op 1 . - CDS 694330 - 694575 345 ## gi|313472323|ref|ZP_07812815.1| hypothetical protein LBJG_01251 698 281 Op 2 . - CDS 694568 - 696085 1179 ## COG5585 NAD+--asparagine ADP-ribosyltransferase 699 281 Op 3 . - CDS 696072 - 697325 710 ## PEPE_0783 phage portal protein, SPP1 GP6-like - Term 698116 - 698166 9.1 700 282 Op 1 7/0.005 - CDS 698178 - 699365 1306 ## COG0282 Acetate kinase 701 282 Op 2 . - CDS 699398 - 700261 822 ## COG0827 Adenine-specific DNA methylase - Prom 700417 - 700476 6.1 - Term 700393 - 700440 2.5 702 283 Op 1 . - CDS 700584 - 701099 354 ## LGAS_1271 hypothetical protein 703 283 Op 2 . - CDS 701077 - 701289 176 ## gi|256851412|ref|ZP_05556801.1| predicted protein 704 283 Op 3 . - CDS 701276 - 701707 341 ## LGAS_1272 hypothetical protein 705 283 Op 4 . - CDS 701685 - 702014 434 ## LDBND_0611 competence protein comgc 706 283 Op 5 24/0.000 - CDS 702025 - 702903 736 ## COG1459 Type II secretory pathway, component PulF - Term 702918 - 702952 1.5 707 283 Op 6 . - CDS 702992 - 703969 821 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB - Prom 704001 - 704060 6.7 - Term 704017 - 704053 6.8 708 284 Tu 1 1/0.185 - CDS 704069 - 705682 1605 ## COG0531 Amino acid transporters - Prom 705796 - 705855 4.8 - Term 705836 - 705886 7.1 709 285 Tu 1 . - CDS 705904 - 706782 1030 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 706811 - 706870 6.8 + Prom 706751 - 706810 9.9 710 286 Op 1 . + CDS 706859 - 707374 476 ## LAC30SC_03675 integral membrane protein 711 286 Op 2 . + CDS 707459 - 708187 1194 ## COG0217 Uncharacterized conserved protein + Term 708202 - 708239 7.3 - Term 708190 - 708227 7.3 712 287 Op 1 . - CDS 708235 - 708654 434 ## COG0394 Protein-tyrosine-phosphatase 713 287 Op 2 . - CDS 708704 - 709411 593 ## LCRIS_00726 hypothetical protein 714 287 Op 3 11/0.000 - CDS 709412 - 709747 277 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 715 287 Op 4 . - CDS 709744 - 710037 327 ## COG0239 Integral membrane protein possibly involved in chromosome condensation - Prom 710144 - 710203 5.4 - Term 710168 - 710220 15.1 716 288 Op 1 2/0.118 - CDS 710229 - 710732 566 ## COG2217 Cation transport ATPase 717 288 Op 2 2/0.118 - CDS 710687 - 712135 1156 ## COG2217 Cation transport ATPase 718 288 Op 3 . - CDS 712135 - 712503 444 ## COG4633 Uncharacterized protein conserved in bacteria 719 288 Op 4 . - CDS 712518 - 712721 75 ## LCRIS_00725 transcriptional repressor copy 720 288 Op 5 . - CDS 712718 - 712990 214 ## COG3682 Predicted transcriptional regulator 721 288 Op 6 4/0.036 - CDS 713036 - 713869 933 ## COG0561 Predicted hydrolases of the HAD superfamily 722 288 Op 7 . - CDS 713878 - 714687 881 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 714720 - 714779 8.8 - Term 714729 - 714757 -0.1 723 289 Op 1 6/0.005 - CDS 714781 - 716133 1744 ## COG1109 Phosphomannomutase 724 289 Op 2 . - CDS 716152 - 716664 454 ## COG4856 Uncharacterized protein conserved in bacteria 725 289 Op 3 7/0.005 - CDS 716730 - 717140 440 ## COG4856 Uncharacterized protein conserved in bacteria 726 289 Op 4 . - CDS 717116 - 717958 945 ## COG1624 Uncharacterized conserved protein 727 289 Op 5 25/0.000 - CDS 717995 - 719068 929 ## COG0687 Spermidine/putrescine-binding periplasmic protein 728 289 Op 6 . - CDS 719065 - 719565 444 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 729 289 Op 7 36/0.000 - CDS 719577 - 719873 341 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 730 289 Op 8 30/0.000 - CDS 719870 - 720682 574 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 731 289 Op 9 3/0.062 - CDS 720672 - 721772 1104 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 732 289 Op 10 . - CDS 721769 - 722680 1056 ## COG0812 UDP-N-acetylmuramate dehydrogenase - Prom 722704 - 722763 6.0 + Prom 722702 - 722761 7.9 733 290 Tu 1 . + CDS 722785 - 723318 558 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 723327 - 723371 6.2 - Term 723313 - 723357 9.2 734 291 Tu 1 . - CDS 723363 - 725999 2201 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins - Prom 726022 - 726081 3.6 735 292 Tu 1 . - CDS 726232 - 726930 313 ## gi|238854853|ref|ZP_04645183.1| hypothetical protein LACJE0001_0820 - Prom 726973 - 727032 4.2 736 293 Tu 1 . - CDS 727503 - 728168 408 ## gi|238854854|ref|ZP_04645184.1| putative thymidylate kinase - Prom 728226 - 728285 8.2 + Prom 728188 - 728247 15.5 737 294 Op 1 21/0.000 + CDS 728287 - 728625 356 ## COG0477 Permeases of the major facilitator superfamily 738 294 Op 2 . + CDS 728553 - 729500 374 ## COG0477 Permeases of the major facilitator superfamily + Term 729509 - 729553 6.2 - Term 729495 - 729539 9.2 739 295 Op 1 . - CDS 729546 - 730022 673 ## COG0802 Predicted ATPase or kinase 740 295 Op 2 . - CDS 730022 - 730999 1236 ## COG0280 Phosphotransacetylase 741 295 Op 3 . - CDS 731012 - 731701 538 ## COG0692 Uracil DNA glycosylase - Prom 731821 - 731880 5.9 + Prom 731687 - 731746 3.4 742 296 Op 1 . + CDS 731794 - 732075 272 ## LCRIS_00710 hypothetical protein + Term 732097 - 732128 1.0 743 296 Op 2 . + CDS 732129 - 732308 161 ## gi|238854859|ref|ZP_04645189.1| conserved hypothetical protein - Term 732085 - 732116 1.0 744 297 Op 1 10/0.000 - CDS 732312 - 732767 479 ## COG0691 tmRNA-binding protein 745 297 Op 2 . - CDS 732777 - 734438 1221 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 746 297 Op 3 . - CDS 734366 - 735097 167 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 - Term 735114 - 735151 4.1 747 297 Op 4 . - CDS 735158 - 735376 329 ## LCRIS_00448 preprotein translocase - Prom 735409 - 735468 8.7 - Term 735470 - 735521 10.3 748 298 Op 1 . - CDS 735535 - 736833 1977 ## COG0148 Enolase 749 298 Op 2 13/0.000 - CDS 736893 - 737648 800 ## COG0149 Triosephosphate isomerase 750 298 Op 3 26/0.000 - CDS 737663 - 738874 1656 ## COG0126 3-phosphoglycerate kinase - Term 738896 - 738934 7.1 751 298 Op 4 5/0.021 - CDS 738979 - 739995 1196 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 752 298 Op 5 . - CDS 740041 - 741084 659 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain + TRNA 741327 - 741398 39.6 # Arg CCG 0 0 - Term 741447 - 741478 1.8 753 299 Op 1 4/0.036 - CDS 741483 - 742658 1283 ## COG0531 Amino acid transporters 754 299 Op 2 4/0.036 - CDS 742640 - 742870 160 ## COG0531 Amino acid transporters 755 299 Op 3 . - CDS 742867 - 743076 322 ## COG0531 Amino acid transporters - Prom 743101 - 743160 8.8 + Prom 743052 - 743111 8.7 756 300 Op 1 . + CDS 743240 - 743707 463 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 743717 - 743761 8.1 + Prom 743719 - 743778 2.5 757 300 Op 2 . + CDS 743802 - 744383 770 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Term 744408 - 744443 7.1 - Term 744390 - 744438 9.5 758 301 Op 1 . - CDS 744445 - 745437 1098 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 745482 - 745541 6.0 759 301 Op 2 . - CDS 745563 - 746762 672 ## gi|313472374|ref|ZP_07812866.1| putative glucose/galactose transporter family protein - Prom 746785 - 746844 5.2 - Term 746816 - 746854 5.1 760 302 Op 1 12/0.000 - CDS 746857 - 747702 919 ## COG1481 Uncharacterized protein conserved in bacteria - Prom 747726 - 747785 2.5 761 302 Op 2 12/0.000 - CDS 747787 - 748824 978 ## COG0391 Uncharacterized conserved protein 762 302 Op 3 . - CDS 748834 - 749709 908 ## COG1660 Predicted P-loop-containing kinase - Prom 749729 - 749788 2.0 763 303 Op 1 . - CDS 749796 - 752645 2613 ## COG0178 Excinuclease ATPase subunit 764 303 Op 2 . - CDS 752632 - 752784 147 ## LA2_03540 excinuclease ABC subunit B 765 303 Op 3 . - CDS 752805 - 753614 878 ## COG0556 Helicase subunit of the DNA excision repair complex 766 303 Op 4 . - CDS 753659 - 754675 938 ## COG0556 Helicase subunit of the DNA excision repair complex - Prom 754708 - 754767 5.5 - Term 754685 - 754715 -0.4 767 303 Op 5 1/0.185 - CDS 754773 - 756497 2192 ## COG1109 Phosphomannomutase - Prom 756548 - 756607 6.3 - Term 756580 - 756623 2.8 768 304 Op 1 . - CDS 756633 - 757559 568 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 769 304 Op 2 . - CDS 757628 - 758650 1130 ## COG0240 Glycerol-3-phosphate dehydrogenase 770 304 Op 3 10/0.000 - CDS 758653 - 759417 701 ## COG0682 Prolipoprotein diacylglyceryltransferase 771 304 Op 4 . - CDS 759502 - 760446 953 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 772 304 Op 5 . - CDS 760458 - 760763 442 ## gi|238854883|ref|ZP_04645213.1| hypothetical protein LACJE0001_0851 773 304 Op 6 6/0.005 - CDS 760776 - 761774 1031 ## COG1186 Protein chain release factor B - Prom 761884 - 761943 4.6 - Term 761906 - 761937 2.5 774 305 Tu 1 . - CDS 761950 - 764256 2511 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 764391 - 764450 8.5 - Term 764429 - 764468 7.1 775 306 Op 1 6/0.005 - CDS 764488 - 765033 791 ## PROTEIN SUPPORTED gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) 776 306 Op 2 6/0.005 - CDS 765113 - 765760 177 ## COG1040 Predicted amidophosphoribosyltransferases 777 306 Op 3 . - CDS 765787 - 767067 798 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) - Prom 767124 - 767183 8.4 + Prom 766816 - 766875 5.8 778 307 Tu 1 . + CDS 767113 - 767775 703 ## COG1739 Uncharacterized conserved protein + Term 767780 - 767809 2.1 - Term 767761 - 767804 11.2 779 308 Op 1 . - CDS 767815 - 768099 68 ## LAC30SC_03340 undecaprenyl-phosphaten-acetyl-glucosaminyltransfera se 780 308 Op 2 . - CDS 767964 - 768983 943 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 769011 - 769070 7.0 - Term 769037 - 769086 13.1 781 309 Op 1 . - CDS 769088 - 769990 1108 ## COG1418 Predicted HD superfamily hydrolase 782 309 Op 2 . - CDS 770176 - 770715 717 ## COG1418 Predicted HD superfamily hydrolase - Prom 770752 - 770811 10.1 - Term 770786 - 770822 5.0 783 310 Tu 1 . - CDS 770842 - 771924 1415 ## COG0468 RecA/RadA recombinase - Prom 772031 - 772090 11.1 - Term 771969 - 772019 7.3 784 311 Op 1 . - CDS 772104 - 772667 270 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 785 311 Op 2 . - CDS 772675 - 773427 794 ## LAC30SC_03320 transcriptional regulator 786 311 Op 3 1/0.185 - CDS 773394 - 773741 421 ## COG1426 Uncharacterized protein conserved in bacteria 787 311 Op 4 . - CDS 773794 - 774522 542 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 788 311 Op 5 . - CDS 774533 - 775228 607 ## LBA0661 protease 789 311 Op 6 14/0.000 - CDS 775156 - 775767 230 ## COG0612 Predicted Zn-dependent peptidases 790 311 Op 7 . - CDS 775764 - 776906 995 ## COG0612 Predicted Zn-dependent peptidases 791 311 Op 8 . - CDS 776964 - 779348 1969 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 792 311 Op 9 . - CDS 779368 - 779763 443 ## COG4835 Uncharacterized protein conserved in bacteria 793 311 Op 10 . - CDS 779765 - 780322 618 ## COG0219 Predicted rRNA methylase (SpoU class) 794 311 Op 11 . - CDS 780315 - 780536 252 ## COG0628 Predicted permease 795 311 Op 12 . - CDS 780539 - 781315 627 ## COG0628 Predicted permease - Prom 781405 - 781464 10.9 - Term 781549 - 781596 7.2 796 312 Op 1 1/0.185 - CDS 781598 - 783499 1981 ## COG0474 Cation transport ATPase 797 312 Op 2 . - CDS 783502 - 784341 744 ## COG0474 Cation transport ATPase - Prom 784368 - 784427 7.4 + Prom 784359 - 784418 6.8 798 313 Tu 1 . + CDS 784447 - 784653 252 ## LA2_03375 isomerase + Prom 784726 - 784785 3.8 799 314 Op 1 . + CDS 784833 - 785468 531 ## COG2706 3-carboxymuconate cyclase 800 314 Op 2 . + CDS 785479 - 786309 790 ## COG1968 Uncharacterized bacitracin resistance protein 801 314 Op 3 . + CDS 786323 - 786514 203 ## + Term 786538 - 786578 7.2 - Term 786771 - 786808 -0.9 802 315 Tu 1 . - CDS 786891 - 787250 368 ## gi|238854906|ref|ZP_04645236.1| lpxtg-motif cell wall anchor domain protein - Prom 787336 - 787395 7.5 803 316 Op 1 7/0.005 - CDS 787415 - 788308 268 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family 804 316 Op 2 6/0.005 - CDS 788329 - 789096 796 ## COG0061 Predicted sugar kinase 805 316 Op 3 . - CDS 789096 - 789722 568 ## COG2357 Uncharacterized protein conserved in bacteria - Prom 789887 - 789946 5.8 806 317 Op 1 . + CDS 789834 - 790499 381 ## COG4116 Uncharacterized protein conserved in bacteria 807 317 Op 2 . + CDS 790527 - 791159 509 ## LCRIS_00656 dithiol-disulfide isomerase + Term 791163 - 791198 4.3 - Term 791064 - 791128 2.8 808 318 Tu 1 . - CDS 791170 - 791856 359 ## COG4469 Competence protein - Prom 792002 - 792061 3.9 - Term 792053 - 792084 2.5 809 319 Op 1 . - CDS 792091 - 792771 595 ## LAC30SC_03225 adaptor protein - Prom 792791 - 792850 5.2 - Term 792816 - 792845 1.4 810 319 Op 2 . - CDS 792852 - 793250 450 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 793379 - 793438 16.4 - Term 793416 - 793462 10.0 811 320 Op 1 25/0.000 - CDS 793463 - 795199 2162 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 812 320 Op 2 . - CDS 795199 - 795465 407 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 795503 - 795562 3.0 813 321 Tu 1 . - CDS 795568 - 795750 144 ## LCRIS_00650 hypothetical protein - Prom 795800 - 795859 6.9 + Prom 795828 - 795887 4.8 814 322 Op 1 . + CDS 795913 - 797046 831 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 815 322 Op 2 . + CDS 797043 - 798017 781 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 798027 - 798053 -1.0 + Prom 798025 - 798084 8.4 816 322 Op 3 . + CDS 798116 - 798394 394 ## LJ0814 hypothetical protein + Term 798412 - 798462 10.4 - Term 798400 - 798450 10.4 817 323 Op 1 . - CDS 798456 - 799070 201 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase 818 323 Op 2 . - CDS 799088 - 799465 162 ## COG2017 Galactose mutarotase and related enzymes 819 323 Op 3 4/0.036 - CDS 799495 - 800895 1593 ## COG4468 Galactose-1-phosphate uridyltransferase 820 323 Op 4 2/0.118 - CDS 800942 - 801946 970 ## COG1087 UDP-glucose 4-epimerase 821 323 Op 5 . - CDS 801966 - 803132 1273 ## COG0153 Galactokinase - Prom 803222 - 803281 6.0 - Term 803212 - 803272 1.5 822 324 Tu 1 . - CDS 803287 - 803820 497 ## gi|238854924|ref|ZP_04645254.1| hypothetical protein LACJE0001_0892 - Prom 803869 - 803928 3.9 - Term 803906 - 803956 12.1 823 325 Op 1 . - CDS 803961 - 805532 2244 ## COG4108 Peptide chain release factor RF-3 824 325 Op 2 . - CDS 805532 - 806395 948 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 806482 - 806541 8.4 + Prom 806372 - 806431 5.9 825 326 Tu 1 . + CDS 806515 - 806976 419 ## LCRIS_00638 hypothetical protein + Term 806985 - 807025 -1.0 826 327 Op 1 . - CDS 807133 - 807453 436 ## LAC30SC_03175 hypothetical protein 827 327 Op 2 . - CDS 807464 - 807733 310 ## LAC30SC_03170 recombination regulator RecX - Prom 807753 - 807812 5.1 828 328 Tu 1 . - CDS 807919 - 808278 350 ## COG2137 Uncharacterized protein conserved in bacteria - Prom 808446 - 808505 4.6 829 329 Tu 1 . + CDS 808674 - 809792 1078 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Term 809808 - 809854 7.4 - Term 810030 - 810085 -1.0 830 330 Op 1 2/0.118 - CDS 810207 - 811364 1361 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase 831 330 Op 2 1/0.185 - CDS 811367 - 812593 1189 ## COG1257 Hydroxymethylglutaryl-CoA reductase 832 330 Op 3 . - CDS 812597 - 813742 1466 ## COG0183 Acetyl-CoA acetyltransferase 833 330 Op 4 1/0.185 - CDS 813784 - 814221 527 ## COG1073 Hydrolases of the alpha/beta superfamily 834 330 Op 5 . - CDS 814236 - 814736 366 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 814856 - 814915 10.2 - Term 815182 - 815213 3.1 835 331 Op 1 . - CDS 815226 - 816128 1278 ## COG1210 UDP-glucose pyrophosphorylase 836 331 Op 2 2/0.118 - CDS 816196 - 817056 737 ## COG1295 Predicted membrane protein 837 331 Op 3 . - CDS 817049 - 817876 1194 ## COG0024 Methionine aminopeptidase - Prom 817910 - 817969 8.5 + Prom 817869 - 817928 7.3 838 332 Op 1 . + CDS 818086 - 818532 541 ## COG0716 Flavodoxins 839 332 Op 2 . + CDS 818525 - 818995 425 ## LBA0621 cellwall teichoic acid glycosylation protein + Term 819012 - 819051 5.3 - Term 818995 - 819045 11.3 840 333 Tu 1 . - CDS 819062 - 819496 567 ## COG2153 Predicted acyltransferase - Prom 819548 - 819607 5.7 841 334 Tu 1 . - CDS 819660 - 819938 313 ## COG1846 Transcriptional regulators - Prom 819975 - 820034 1.6 - Term 819980 - 820024 7.5 842 335 Op 1 . - CDS 820070 - 820807 877 ## COG0381 UDP-N-acetylglucosamine 2-epimerase - Prom 820870 - 820929 2.1 843 335 Op 2 . - CDS 820941 - 821210 383 ## COG0381 UDP-N-acetylglucosamine 2-epimerase - Prom 821362 - 821421 8.2 + Prom 821190 - 821249 4.5 844 336 Tu 1 . + CDS 821279 - 821458 154 ## gi|260664230|ref|ZP_05865083.1| predicted protein + Prom 821471 - 821530 9.8 845 337 Tu 1 . + CDS 821626 - 821922 392 ## LGAS_1868 hypothetical protein + Term 821932 - 821983 -0.5 - TRNA 821990 - 822063 75.2 # Arg CCT 0 0 846 338 Op 1 . - CDS 822112 - 822813 488 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 847 338 Op 2 . - CDS 822807 - 823535 352 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 848 338 Op 3 . - CDS 823447 - 824673 1306 ## COG0513 Superfamily II DNA and RNA helicases 849 338 Op 4 . - CDS 824673 - 825407 565 ## LGAS_0568 lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Prom 825468 - 825527 7.0 + Prom 825420 - 825479 5.7 850 339 Op 1 4/0.036 + CDS 825505 - 826512 818 ## COG0531 Amino acid transporters 851 339 Op 2 . + CDS 826503 - 826799 202 ## COG0531 Amino acid transporters + Term 826800 - 826860 16.0 - Term 826793 - 826840 8.1 852 340 Tu 1 . - CDS 826848 - 827411 661 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase - Prom 827451 - 827510 9.1 - Term 827453 - 827499 8.1 853 341 Tu 1 . - CDS 827605 - 828672 1033 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 828828 - 828887 7.7 - Term 828792 - 828826 3.0 854 342 Tu 1 . - CDS 828908 - 829564 641 ## COG0778 Nitroreductase - Prom 829595 - 829654 4.6 - Term 829639 - 829673 3.5 855 343 Tu 1 . - CDS 829689 - 832058 2965 ## COG3957 Phosphoketolase - Prom 832128 - 832187 8.6 - Term 832159 - 832196 0.3 856 344 Op 1 . - CDS 832197 - 832922 661 ## COG2188 Transcriptional regulators 857 344 Op 2 . - CDS 832938 - 833861 1095 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 833884 - 833943 9.6 - Term 833893 - 833937 8.9 858 345 Op 1 . - CDS 833953 - 834645 770 ## COG0120 Ribose 5-phosphate isomerase 859 345 Op 2 . - CDS 834645 - 835568 954 ## COG0524 Sugar kinases, ribokinase family 860 345 Op 3 . - CDS 835636 - 836442 808 ## COG1085 Galactose-1-phosphate uridylyltransferase - Prom 836588 - 836647 5.6 + Prom 836572 - 836631 7.0 861 346 Tu 1 . + CDS 836667 - 837962 1483 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 838009 - 838044 5.1 - Term 837992 - 838037 7.1 862 347 Op 1 21/0.000 - CDS 838146 - 838673 656 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 863 347 Op 2 1/0.185 - CDS 838687 - 839736 1101 ## COG0306 Phosphate/sulphate permeases 864 347 Op 3 17/0.000 - CDS 839815 - 840477 634 ## COG0765 ABC-type amino acid transport system, permease component 865 347 Op 4 31/0.000 - CDS 840491 - 841129 427 ## COG0765 ABC-type amino acid transport system, permease component 866 347 Op 5 16/0.000 - CDS 841126 - 841953 793 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 867 347 Op 6 1/0.185 - CDS 841963 - 842490 342 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 868 347 Op 7 . - CDS 842409 - 842702 371 ## COG1126 ABC-type polar amino acid transport system, ATPase component - Prom 842736 - 842795 6.5 - Term 842760 - 842795 1.1 869 348 Op 1 35/0.000 - CDS 842817 - 844079 231 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 870 348 Op 2 35/0.000 - CDS 844139 - 844573 308 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 871 348 Op 3 35/0.000 - CDS 844573 - 844836 126 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 844928 - 844987 4.3 872 348 Op 4 . - CDS 845009 - 846307 891 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 873 348 Op 5 . - CDS 846304 - 846762 393 ## FI9785_616 putative transcriptional regulator - Prom 846839 - 846898 5.3 + Prom 846810 - 846869 8.3 874 349 Tu 1 . + CDS 846890 - 847525 747 ## COG0572 Uridine kinase + Term 847540 - 847596 12.2 - Term 847535 - 847574 9.3 875 350 Op 1 4/0.036 - CDS 847587 - 848546 829 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 876 350 Op 2 . - CDS 848563 - 850590 2094 ## COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family 877 350 Op 3 . - CDS 850602 - 850820 170 ## LEUM_0101 glycosyltransferase - Prom 850929 - 850988 10.5 + Prom 850907 - 850966 10.2 878 351 Op 1 6/0.005 + CDS 850997 - 852208 1068 ## COG0477 Permeases of the major facilitator superfamily + Prom 852210 - 852269 4.8 879 351 Op 2 . + CDS 852301 - 853740 1391 ## COG0531 Amino acid transporters + Term 853747 - 853812 22.2 - Term 853744 - 853790 6.0 880 352 Tu 1 . - CDS 853804 - 855282 1464 ## COG0531 Amino acid transporters - Prom 855322 - 855381 3.6 - Term 855353 - 855392 6.0 881 353 Op 1 32/0.000 - CDS 855399 - 856106 1011 ## COG0704 Phosphate uptake regulator 882 353 Op 2 41/0.000 - CDS 856124 - 856876 355 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 883 353 Op 3 38/0.000 - CDS 856891 - 857772 913 ## COG0581 ABC-type phosphate transport system, permease component 884 353 Op 4 39/0.000 - CDS 857776 - 858675 879 ## COG0573 ABC-type phosphate transport system, permease component 885 353 Op 5 . - CDS 858680 - 859546 768 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 859583 - 859642 8.8 + Prom 859541 - 859600 4.3 886 354 Tu 1 . + CDS 859661 - 860371 469 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 860464 - 860504 1.1 + Prom 860393 - 860452 7.6 887 355 Tu 1 . + CDS 860555 - 861817 1076 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 861875 - 861911 4.0 + Prom 861855 - 861914 5.1 888 356 Tu 1 . + CDS 861948 - 863213 1267 ## COG1301 Na+/H+-dicarboxylate symporters + Term 863219 - 863259 7.2 - Term 863205 - 863247 8.2 889 357 Tu 1 . - CDS 863261 - 864274 1058 ## COG1816 Adenosine deaminase - Prom 864320 - 864379 7.6 + Prom 864294 - 864353 6.6 890 358 Op 1 . + CDS 864452 - 865591 1677 ## COG0516 IMP dehydrogenase/GMP reductase + Term 865602 - 865645 6.0 891 358 Op 2 . + CDS 865656 - 866975 1367 ## COG1457 Purine-cytosine permease and related proteins + Term 866982 - 867036 11.0 - Term 866964 - 867024 13.1 892 359 Tu 1 . - CDS 867039 - 868532 1406 ## COG0531 Amino acid transporters - Prom 868564 - 868623 7.5 893 360 Tu 1 . - CDS 868652 - 869221 563 ## COG4721 Predicted membrane protein + Prom 869703 - 869762 4.7 894 361 Op 1 21/0.000 + CDS 869796 - 870860 909 ## COG0477 Permeases of the major facilitator superfamily + Prom 870866 - 870925 8.3 895 361 Op 2 . + CDS 870957 - 872252 1152 ## COG0477 Permeases of the major facilitator superfamily + Term 872258 - 872284 0.3 - Term 872236 - 872280 11.1 896 362 Tu 1 . - CDS 872287 - 874254 1864 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component - Prom 874293 - 874352 5.2 + Prom 874226 - 874285 4.0 897 363 Op 1 . + CDS 874365 - 874970 446 ## COG1309 Transcriptional regulator + Prom 874988 - 875047 2.5 898 363 Op 2 9/0.005 + CDS 875093 - 875848 714 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 875855 - 875906 8.5 + Prom 875886 - 875945 8.4 899 364 Op 1 31/0.000 + CDS 876011 - 876790 590 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 900 364 Op 2 34/0.000 + CDS 876793 - 877470 508 ## COG0765 ABC-type amino acid transport system, permease component 901 364 Op 3 . + CDS 877470 - 878204 540 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 902 364 Op 4 23/0.000 + CDS 878273 - 878779 290 ## COG2963 Transposase and inactivated derivatives + Term 878786 - 878835 -0.6 + Prom 878782 - 878841 4.3 903 364 Op 5 . + CDS 879053 - 879670 373 ## COG2801 Transposase and inactivated derivatives - Term 879608 - 879652 7.5 904 365 Op 1 . - CDS 879713 - 880345 588 ## COG2323 Predicted membrane protein - Prom 880370 - 880429 2.1 905 365 Op 2 . - CDS 880432 - 880797 135 ## LAC30SC_08955 hypothetical protein - Prom 880817 - 880876 10.6 - Term 880830 - 880856 -1.0 906 366 Tu 1 3/0.062 - CDS 880989 - 881381 319 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 881422 - 881481 6.0 907 367 Tu 1 . - CDS 881561 - 882043 501 ## COG1309 Transcriptional regulator - Prom 882183 - 882242 8.0 + Prom 882196 - 882255 6.7 908 368 Op 1 2/0.118 + CDS 882290 - 882622 334 ## COG3328 Transposase and inactivated derivatives 909 368 Op 2 . + CDS 882600 - 883472 823 ## COG3328 Transposase and inactivated derivatives + Term 883589 - 883642 1.3 - Term 883347 - 883388 -0.8 910 369 Tu 1 . - CDS 883551 - 884210 566 ## gi|260664286|ref|ZP_05865139.1| predicted protein - Prom 884245 - 884304 9.8 - Term 884226 - 884261 -0.1 911 370 Tu 1 1/0.185 - CDS 884328 - 884567 172 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Prom 884617 - 884676 3.3 912 371 Op 1 . - CDS 884680 - 885000 328 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold 913 371 Op 2 . - CDS 884994 - 885185 141 ## gi|260664287|ref|ZP_05865140.1| cell surface hydrolase - Term 885208 - 885238 -1.0 914 371 Op 3 2/0.118 - CDS 885241 - 886578 1262 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 915 371 Op 4 . - CDS 886626 - 886883 298 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 886908 - 886967 6.8 - Term 886904 - 886946 -0.6 916 372 Tu 1 . - CDS 886973 - 889387 3319 ## COG0495 Leucyl-tRNA synthetase - Prom 889415 - 889474 5.0 + Prom 889578 - 889637 11.6 917 373 Tu 1 . + CDS 889659 - 890312 372 ## COG0671 Membrane-associated phospholipid phosphatase + Term 890316 - 890365 11.0 - Term 890311 - 890344 3.1 918 374 Op 1 . - CDS 890364 - 891575 1585 ## COG1252 NADH dehydrogenase, FAD-containing subunit 919 374 Op 2 . - CDS 891594 - 892493 732 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase - Prom 892555 - 892614 6.1 + Prom 892498 - 892557 9.8 920 375 Tu 1 . + CDS 892647 - 893543 1051 ## COG0142 Geranylgeranyl pyrophosphate synthase + Term 893544 - 893577 1.1 921 376 Op 1 14/0.000 - CDS 893548 - 895284 1513 ## COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components 922 376 Op 2 5/0.021 - CDS 895277 - 896992 203 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 923 376 Op 3 31/0.000 - CDS 896994 - 898010 988 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 924 376 Op 4 1/0.185 - CDS 898011 - 899444 1438 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 - Prom 899539 - 899598 8.8 - Term 899547 - 899596 15.1 925 377 Op 1 21/0.000 - CDS 899607 - 900311 406 ## COG0477 Permeases of the major facilitator superfamily 926 377 Op 2 4/0.036 - CDS 900311 - 901057 508 ## COG0477 Permeases of the major facilitator superfamily 927 377 Op 3 . - CDS 901070 - 902263 1542 ## COG0192 S-adenosylmethionine synthetase - Prom 902346 - 902405 8.4 - TRNA 902418 - 902490 86.4 # Val TAC 0 0 - TRNA 902496 - 902567 64.4 # Glu TTC 0 0 - TRNA 902657 - 902747 57.5 # Ser GGA 0 0 - TRNA 902752 - 902824 83.1 # Asn GTT 0 0 - 5S_RRNA 902850 - 902951 99.0 # EU184020 [D:4881..4998] # 5S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. - TRNA 906373 - 906446 91.8 # Ile GAT 0 0 + 5S_RRNA 906608 - 906699 95.0 # AE017194 [D:4654188..4655695] # 5S ribosomal RNA # Bacillus cereus ATCC 10987 # Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group. - SSU_RRNA 907509 - 907818 99.0 # AY959136 [D:1..1540] # 16S ribosomal RNA # uncultured bacterium # Bacteria; environmental samples. + Prom 908163 - 908222 10.5 928 378 Op 1 . + CDS 908380 - 909126 189 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 929 378 Op 2 . + CDS 909156 - 909323 197 ## LDBND_1495 ferredoxin--nadp reductase 930 378 Op 3 . + CDS 909334 - 909846 523 ## COG1267 Phosphatidylglycerophosphatase A and related proteins 931 378 Op 4 . + CDS 909849 - 910499 638 ## COG0586 Uncharacterized membrane-associated protein - Term 910476 - 910505 1.4 932 379 Op 1 . - CDS 910514 - 911749 1541 ## COG0112 Glycine/serine hydroxymethyltransferase 933 379 Op 2 7/0.005 - CDS 911803 - 913179 1074 ## COG3428 Predicted membrane protein 934 379 Op 3 . - CDS 913172 - 913657 331 ## COG3402 Uncharacterized conserved protein - Term 913670 - 913712 7.2 935 380 Op 1 . - CDS 913736 - 913897 92 ## LSA1051 excinuclease ABC subunit A 936 380 Op 2 . - CDS 913903 - 915282 791 ## COG0178 Excinuclease ATPase subunit - Prom 915339 - 915398 2.1 937 381 Tu 1 . - CDS 915402 - 916253 958 ## COG0178 Excinuclease ATPase subunit - Prom 916287 - 916346 7.8 + Prom 916249 - 916308 7.2 938 382 Tu 1 . + CDS 916372 - 917763 1290 ## COG0277 FAD/FMN-containing dehydrogenases + Term 917773 - 917833 3.3 939 383 Tu 1 . - CDS 917827 - 918411 474 ## COG0778 Nitroreductase - Prom 918482 - 918541 2.8 - Term 918534 - 918566 -0.9 940 384 Tu 1 6/0.005 - CDS 918568 - 918984 515 ## COG1396 Predicted transcriptional regulators - Prom 919006 - 919065 2.7 941 385 Tu 1 . - CDS 919113 - 919523 302 ## COG1396 Predicted transcriptional regulators - Prom 919646 - 919705 7.6 + Prom 919579 - 919638 3.6 942 386 Op 1 . + CDS 919667 - 920032 84 ## COG1309 Transcriptional regulator 943 386 Op 2 . + CDS 920043 - 920387 427 ## LCK_00432 hypothetical protein + Term 920394 - 920427 5.4 - Term 920376 - 920421 12.3 944 387 Op 1 . - CDS 920487 - 920984 583 ## COG0534 Na+-driven multidrug efflux pump 945 387 Op 2 . - CDS 920897 - 921241 183 ## LBA1571 membrane protein - Prom 921289 - 921348 4.1 - Term 921395 - 921438 1.3 946 388 Tu 1 . - CDS 921460 - 921732 364 ## COG0534 Na+-driven multidrug efflux pump + Prom 921706 - 921765 6.9 947 389 Tu 1 . + CDS 921938 - 923212 790 ## COG3464 Transposase and inactivated derivatives + Term 923262 - 923297 5.1 - Term 923240 - 923292 13.0 948 390 Op 1 . - CDS 923303 - 926734 4574 ## LJ0621 hypothetical protein 949 390 Op 2 . - CDS 926674 - 926958 179 ## gi|313472507|ref|ZP_07812997.1| surface protein Rib - Prom 927049 - 927108 1.8 950 391 Tu 1 . - CDS 927198 - 927749 535 ## LJ0621 hypothetical protein - Prom 927802 - 927861 1.9 - Term 927764 - 927798 2.6 951 392 Tu 1 . - CDS 927913 - 930564 3139 ## LJ0621 hypothetical protein 952 393 Tu 1 . - CDS 930818 - 930985 77 ## gi|260664944|ref|ZP_05865795.1| cell wall/surface protein + Prom 931219 - 931278 15.4 953 394 Op 1 . + CDS 931400 - 932269 851 ## LAR_1469 hypothetical protein + Term 932311 - 932358 1.2 + Prom 932318 - 932377 4.3 954 394 Op 2 . + CDS 932466 - 933725 916 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 955 394 Op 3 . + CDS 933739 - 934224 447 ## LAR_1467 endoglucanase 956 394 Op 4 . + CDS 934191 - 934610 338 ## LAR_1467 endoglucanase 957 394 Op 5 . + CDS 934622 - 934861 119 ## LA2_00625 beta-glucanase precursor + Term 934979 - 935020 1.0 + Prom 934895 - 934954 6.5 958 395 Tu 1 . + CDS 935040 - 936449 1337 ## COG0531 Amino acid transporters + Term 936456 - 936493 5.7 - Term 936639 - 936677 -0.8 959 396 Tu 1 . - CDS 936680 - 937705 1121 ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF - Prom 937735 - 937794 5.9 - Term 937765 - 937800 3.4 960 397 Op 1 . - CDS 937804 - 938235 276 ## COG1959 Predicted transcriptional regulator 961 397 Op 2 . - CDS 938261 - 938395 90 ## gi|238855676|ref|ZP_04645975.1| putative nucleoside-diphosphate-sugar epimerase - Prom 938559 - 938618 4.7 962 398 Op 1 . - CDS 938637 - 939683 728 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 963 398 Op 2 . - CDS 939680 - 939799 208 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 964 398 Op 3 . - CDS 939781 - 940212 721 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 965 398 Op 4 . - CDS 940182 - 940448 200 ## LCRIS_00389 glycoprotein endopeptidase 966 398 Op 5 . - CDS 940424 - 940831 562 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 967 399 Op 1 . - CDS 940936 - 941079 99 ## gi|282931576|ref|ZP_06337070.1| putative membrane protein 968 399 Op 2 . - CDS 941135 - 941473 419 ## LAC30SC_01925 hypothetical protein - Prom 941559 - 941618 5.2 969 400 Op 1 . - CDS 941770 - 942309 604 ## LBA0387 hypothetical protein 970 400 Op 2 . - CDS 942309 - 942887 355 ## LBA0387 hypothetical protein 971 400 Op 3 . - CDS 942880 - 943194 315 ## COG3884 Acyl-ACP thioesterase - Prom 943268 - 943327 1.6 972 401 Op 1 . - CDS 943329 - 943607 303 ## LDBND_1534 acyl-acp thioesterase 973 401 Op 2 2/0.118 - CDS 943610 - 944464 929 ## COG0313 Predicted methyltransferases 974 401 Op 3 1/0.185 - CDS 944448 - 944804 316 ## COG4467 Uncharacterized protein conserved in bacteria 975 401 Op 4 2/0.118 - CDS 944822 - 945670 686 ## COG0470 ATPase involved in DNA replication 976 401 Op 5 4/0.036 - CDS 945670 - 945990 485 ## COG3870 Uncharacterized protein conserved in bacteria 977 401 Op 6 . - CDS 945990 - 946637 787 ## COG0125 Thymidylate kinase - Prom 946657 - 946716 7.1 - Term 946694 - 946724 2.7 978 402 Op 1 . - CDS 946728 - 946967 258 ## LAC30SC_01890 hypothetical protein 979 402 Op 2 23/0.000 - CDS 946964 - 947563 487 ## COG0353 Recombinational DNA repair protein (RecF pathway) 980 402 Op 3 30/0.000 - CDS 947563 - 947892 531 ## COG0718 Uncharacterized protein conserved in bacteria 981 402 Op 4 . - CDS 947933 - 948349 328 ## COG2812 DNA polymerase III, gamma/tau subunits 982 402 Op 5 . - CDS 948280 - 948837 367 ## LGAS_0368 DNA polymerase III, gamma/tau subunit - Prom 948868 - 948927 2.4 983 403 Tu 1 . - CDS 948951 - 949712 602 ## COG2812 DNA polymerase III, gamma/tau subunits - Prom 949850 - 949909 5.9 - Term 949723 - 949757 4.1 984 404 Op 1 . - CDS 949917 - 950399 587 ## COG0590 Cytosine/adenosine deaminases 985 404 Op 2 . - CDS 950410 - 951009 684 ## COG2813 16S RNA G1207 methylase RsmC - Prom 951213 - 951272 8.8 - Term 951247 - 951275 -1.0 986 405 Op 1 . - CDS 951281 - 951646 312 ## COG3654 Prophage maintenance system killer protein 987 405 Op 2 . - CDS 951676 - 952227 525 ## COG3600 Uncharacterized phage-associated protein - Prom 952267 - 952326 8.0 + Prom 952280 - 952339 6.7 988 406 Op 1 2/0.118 + CDS 952374 - 952706 324 ## COG3328 Transposase and inactivated derivatives 989 406 Op 2 . + CDS 952684 - 953556 853 ## COG3328 Transposase and inactivated derivatives - Term 953887 - 953929 8.9 990 407 Op 1 47/0.000 - CDS 953949 - 954311 573 ## PROTEIN SUPPORTED gi|238855643|ref|ZP_04645943.1| ribosomal protein L7/L12 991 407 Op 2 2/0.118 - CDS 954362 - 954889 838 ## PROTEIN SUPPORTED gi|227525593|ref|ZP_03955642.1| 50S ribosomal protein L10 - Term 954909 - 954943 4.0 992 408 Tu 1 . - CDS 955068 - 955856 213 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase - Prom 955935 - 955994 4.6 - Term 956004 - 956034 -0.6 993 409 Tu 1 . - CDS 956085 - 957101 739 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 957144 - 957203 7.7 - Term 957219 - 957262 5.6 994 410 Op 1 55/0.000 - CDS 957280 - 957972 1163 ## PROTEIN SUPPORTED gi|238855647|ref|ZP_04645947.1| ribosomal protein L1 - Prom 958002 - 958061 2.1 995 410 Op 2 45/0.000 - CDS 958070 - 958495 693 ## PROTEIN SUPPORTED gi|227525597|ref|ZP_03955646.1| 50S ribosomal protein L11 - Term 958521 - 958553 2.5 996 410 Op 3 . - CDS 958626 - 959087 633 ## COG0250 Transcription antiterminator - Prom 959202 - 959261 6.3 - Term 959198 - 959238 3.5 997 411 Op 1 . - CDS 959280 - 959450 184 ## LDBND_1567 protein translocase subunit SecE/sec61 gamma 998 411 Op 2 . - CDS 959453 - 959602 257 ## PROTEIN SUPPORTED gi|227525600|ref|ZP_03955649.1| ribosomal protein L33 - Prom 959623 - 959682 5.9 - Term 959662 - 959692 -0.5 999 412 Op 1 . - CDS 959749 - 959967 245 ## LAC30SC_01740 hypothetical protein 1000 412 Op 2 . - CDS 960024 - 960575 378 ## LCRIS_00352 DNA-directed RNA polymerase sigma factor, sigma H - Prom 960599 - 960658 4.5 1001 413 Op 1 7/0.005 - CDS 960679 - 961434 568 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 1002 413 Op 2 8/0.005 - CDS 961421 - 961864 306 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 1003 413 Op 3 . - CDS 961916 - 963277 1249 ## COG0215 Cysteinyl-tRNA synthetase - Prom 963306 - 963365 8.7 - Term 963324 - 963365 3.1 1004 414 Tu 1 . - CDS 963372 - 963578 192 ## gi|260664902|ref|ZP_05865753.1| predicted protein - Prom 963659 - 963718 8.4 - Term 963796 - 963823 -0.8 1005 415 Tu 1 . - CDS 963833 - 965332 1818 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 1006 416 Op 1 1/0.185 - CDS 965407 - 966783 1173 ## COG1066 Predicted ATP-dependent serine protease 1007 416 Op 2 . - CDS 966797 - 967336 525 ## COG0756 dUTPase - Prom 967380 - 967439 7.4 + Prom 967363 - 967422 8.8 1008 417 Op 1 . + CDS 967535 - 967726 182 ## gi|238855660|ref|ZP_04645960.1| hypothetical protein LACJE0001_1633 1009 417 Op 2 . + CDS 967796 - 968350 707 ## COG3579 Aminopeptidase C 1010 417 Op 3 . + CDS 968413 - 969144 793 ## COG3579 Aminopeptidase C + Term 969165 - 969200 5.1 - Term 969145 - 969191 6.3 1011 418 Op 1 . - CDS 969194 - 970129 1057 ## COG4639 Predicted kinase - Prom 970149 - 970208 4.4 1012 418 Op 2 . - CDS 970214 - 970891 639 ## COG0588 Phosphoglycerate mutase 1 1013 418 Op 3 . - CDS 970902 - 971069 78 ## gi|238855664|ref|ZP_04645964.1| hypothetical protein LACJE0001_1637 1014 418 Op 4 . - CDS 971071 - 971247 154 ## LCRIS_00338 cation efflux protein 1015 418 Op 5 . - CDS 971325 - 971624 383 ## COG1230 Co/Zn/Cd efflux system component - Term 971795 - 971849 -0.7 1016 419 Op 1 . - CDS 971967 - 972647 927 ## COG0406 Fructose-2,6-bisphosphatase 1017 419 Op 2 . - CDS 972713 - 973465 625 ## COG0730 Predicted permeases - Prom 973527 - 973586 8.5 + Prom 973468 - 973527 9.3 1018 420 Tu 1 . + CDS 973559 - 974131 855 ## COG0693 Putative intracellular protease/amidase + Term 974132 - 974174 11.4 + Prom 974133 - 974192 10.6 1019 421 Tu 1 . + CDS 974266 - 975441 1154 ## COG2814 Arabinose efflux permease + Term 975499 - 975556 -1.0 1020 422 Tu 1 . + CDS 975880 - 976074 246 ## LAC30SC_07745 acetyltransferase + Term 976076 - 976124 6.4 + Prom 976077 - 976136 2.2 1021 423 Op 1 . + CDS 976169 - 977380 1014 ## COG2814 Arabinose efflux permease + Term 977381 - 977423 6.0 + Prom 977409 - 977468 5.9 1022 423 Op 2 . + CDS 977549 - 978727 1005 ## COG2814 Arabinose efflux permease + Term 978800 - 978866 30.0 + Prom 978779 - 978838 80.4 1023 424 Op 1 . + CDS 979073 - 979420 80 ## LDBND_0944 transposase 1024 424 Op 2 . + CDS 979431 - 980336 678 ## COG3464 Transposase and inactivated derivatives + Term 980438 - 980467 2.1 - Term 980426 - 980455 2.1 1025 425 Op 1 59/0.000 - CDS 980485 - 980880 668 ## PROTEIN SUPPORTED gi|238855101|ref|ZP_04645429.1| ribosomal protein S9 1026 425 Op 2 7/0.005 - CDS 980897 - 981367 799 ## PROTEIN SUPPORTED gi|227525626|ref|ZP_03955675.1| 50S ribosomal protein L13 1027 425 Op 3 . - CDS 981437 - 981976 597 ## COG0101 Pseudouridylate synthase 1028 425 Op 4 8/0.005 - CDS 981973 - 982224 261 ## COG0101 Pseudouridylate synthase 1029 425 Op 5 34/0.000 - CDS 982224 - 983021 505 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 1030 425 Op 6 15/0.000 - CDS 983014 - 983877 357 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 1031 425 Op 7 6/0.005 - CDS 983853 - 984704 263 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 984724 - 984783 7.3 - Term 984734 - 984785 1.1 1032 426 Op 1 50/0.000 - CDS 984872 - 985255 620 ## PROTEIN SUPPORTED gi|227525631|ref|ZP_03955680.1| 50S ribosomal protein L17 1033 426 Op 2 32/0.000 - CDS 985283 - 986224 1110 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 1034 426 Op 3 48/0.000 - CDS 986270 - 986659 652 ## PROTEIN SUPPORTED gi|227525633|ref|ZP_03955682.1| ribosomal protein S11 1035 426 Op 4 2/0.118 - CDS 986689 - 987039 586 ## PROTEIN SUPPORTED gi|227525634|ref|ZP_03955683.1| 30S ribosomal protein S13 1036 426 Op 5 . - CDS 987066 - 987182 211 ## PROTEIN SUPPORTED gi|227525635|ref|ZP_03955684.1| 50S ribosomal protein L36 1037 426 Op 6 6/0.005 - CDS 987197 - 987418 299 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 1038 426 Op 7 28/0.000 - CDS 987490 - 988143 725 ## COG0563 Adenylate kinase and related kinases 1039 426 Op 8 . - CDS 988157 - 989158 1006 ## COG0201 Preprotein translocase subunit SecY 1040 426 Op 9 53/0.000 - CDS 989113 - 989448 242 ## COG0201 Preprotein translocase subunit SecY 1041 426 Op 10 48/0.000 - CDS 989448 - 989888 734 ## PROTEIN SUPPORTED gi|227525639|ref|ZP_03955688.1| 50S ribosomal protein L15 1042 426 Op 11 50/0.000 - CDS 989911 - 990096 294 ## PROTEIN SUPPORTED gi|227525640|ref|ZP_03955689.1| 50S ribosomal protein L30 1043 426 Op 12 56/0.000 - CDS 990107 - 990622 848 ## PROTEIN SUPPORTED gi|227525641|ref|ZP_03955690.1| 30S ribosomal protein S5 1044 426 Op 13 46/0.000 - CDS 990640 - 990999 580 ## PROTEIN SUPPORTED gi|227525642|ref|ZP_03955691.1| 50S ribosomal protein L18 1045 426 Op 14 . - CDS 991022 - 991336 381 ## PROTEIN SUPPORTED gi|239632450|ref|ZP_04675481.1| 50S ribosomal protein L6 1046 426 Op 15 . - CDS 991333 - 991551 193 ## LAC30SC_01500 50S ribosomal protein L6 1047 426 Op 16 50/0.000 - CDS 991576 - 991974 667 ## PROTEIN SUPPORTED gi|227525644|ref|ZP_03955693.1| ribosomal protein S8 1048 426 Op 17 50/0.000 - CDS 991998 - 992183 335 ## PROTEIN SUPPORTED gi|227525645|ref|ZP_03955694.1| 30S ribosomal protein S14 1049 426 Op 18 48/0.000 - CDS 992198 - 992740 897 ## PROTEIN SUPPORTED gi|227525646|ref|ZP_03955695.1| ribosomal protein L5 1050 426 Op 19 57/0.000 - CDS 992755 - 993069 525 ## PROTEIN SUPPORTED gi|238855079|ref|ZP_04645407.1| ribosomal protein L24 1051 426 Op 20 50/0.000 - CDS 993091 - 993459 600 ## PROTEIN SUPPORTED gi|227525648|ref|ZP_03955697.1| ribosomal protein L14 1052 426 Op 21 50/0.000 - CDS 993492 - 993758 450 ## PROTEIN SUPPORTED gi|227525649|ref|ZP_03955698.1| 30S ribosomal protein S17 1053 426 Op 22 50/0.000 - CDS 993781 - 993978 316 ## PROTEIN SUPPORTED gi|227525650|ref|ZP_03955699.1| ribosomal protein L29 1054 426 Op 23 50/0.000 - CDS 993968 - 994408 754 ## PROTEIN SUPPORTED gi|227525651|ref|ZP_03955700.1| 50S ribosomal protein L16 1055 426 Op 24 61/0.000 - CDS 994408 - 995082 1146 ## PROTEIN SUPPORTED gi|227525652|ref|ZP_03955701.1| ribosomal protein S3 1056 426 Op 25 . - CDS 995096 - 995290 319 ## PROTEIN SUPPORTED gi|227525653|ref|ZP_03955702.1| 50S ribosomal protein L22 1057 426 Op 26 59/0.000 - CDS 995125 - 995448 264 ## COG0091 Ribosomal protein L22 1058 426 Op 27 60/0.000 - CDS 995472 - 995747 473 ## PROTEIN SUPPORTED gi|227525654|ref|ZP_03955703.1| 30S ribosomal protein S19 1059 426 Op 28 61/0.000 - CDS 995769 - 996605 1453 ## PROTEIN SUPPORTED gi|227525655|ref|ZP_03955704.1| 50S ribosomal protein L2 1060 426 Op 29 61/0.000 - CDS 996621 - 996917 491 ## PROTEIN SUPPORTED gi|238855070|ref|ZP_04645398.1| ribosomal protein L23 1061 426 Op 30 . - CDS 996917 - 997042 179 ## PROTEIN SUPPORTED gi|238855069|ref|ZP_04645397.1| ribosomal protein L4/L1 family protein 1062 426 Op 31 58/0.000 - CDS 996997 - 997533 863 ## PROTEIN SUPPORTED gi|238855069|ref|ZP_04645397.1| ribosomal protein L4/L1 family protein 1063 426 Op 32 40/0.000 - CDS 997548 - 998177 1067 ## PROTEIN SUPPORTED gi|227525658|ref|ZP_03955707.1| 50S ribosomal protein L3 1064 426 Op 33 . - CDS 998205 - 998735 889 ## PROTEIN SUPPORTED gi|238855067|ref|ZP_04645395.1| 30S ribosomal protein S10 - Term 998745 - 998783 5.2 1065 426 Op 34 . - CDS 998792 - 1000318 1422 ## COG1288 Predicted membrane protein - Prom 1000355 - 1000414 6.8 - Term 1000399 - 1000447 11.1 1066 427 Op 1 51/0.000 - CDS 1000463 - 1002553 2948 ## COG0480 Translation elongation factors (GTPases) 1067 427 Op 2 56/0.000 - CDS 1002590 - 1003060 794 ## PROTEIN SUPPORTED gi|238855064|ref|ZP_04645392.1| ribosomal protein S7 1068 427 Op 3 . - CDS 1003075 - 1003482 699 ## PROTEIN SUPPORTED gi|227525665|ref|ZP_03955714.1| 30S ribosomal protein S12 - Prom 1003639 - 1003698 10.9 + Prom 1003580 - 1003639 5.5 1069 428 Op 1 . + CDS 1003665 - 1004111 88 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases 1070 428 Op 2 . + CDS 1004108 - 1004347 165 ## gi|238855062|ref|ZP_04645390.1| prepilin peptidase + Term 1004366 - 1004408 4.3 - Term 1004354 - 1004396 8.1 1071 429 Op 1 58/0.000 - CDS 1004422 - 1008090 4658 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 1072 429 Op 2 7/0.005 - CDS 1008102 - 1009499 1608 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit 1073 429 Op 3 . - CDS 1009517 - 1011739 1486 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 - Prom 1011777 - 1011836 8.3 - Term 1011876 - 1011930 0.4 1074 430 Tu 1 . - CDS 1011957 - 1013015 983 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 1013182 - 1013241 3.3 1075 431 Op 1 . - CDS 1013286 - 1014437 922 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 1014463 - 1014522 6.3 1076 431 Op 2 . - CDS 1014535 - 1014744 281 ## LBA1353 hypothetical protein 1077 431 Op 3 . - CDS 1014675 - 1015379 641 ## COG2364 Predicted membrane protein - Prom 1015445 - 1015504 11.8 - TRNA 1015534 - 1015608 87.5 # Gly GCC 0 0 - TRNA 1015668 - 1015741 75.8 # Pro CGG 0 0 - TRNA 1015784 - 1015858 79.8 # Gly GCC 0 0 - Term 1015742 - 1015777 4.4 1078 432 Op 1 . - CDS 1015970 - 1016458 297 ## gi|238855057|ref|ZP_04645385.1| hypothetical protein LACJE0001_0965 1079 432 Op 2 . - CDS 1016451 - 1017047 194 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 1080 432 Op 3 . - CDS 1017060 - 1017638 464 ## LEGAS_0019 hypothetical protein - Prom 1017680 - 1017739 2.2 1081 433 Tu 1 . - CDS 1017741 - 1018562 619 ## MPTP_1855 hypothetical protein - Prom 1018585 - 1018644 3.9 - Term 1018710 - 1018756 -0.8 1082 434 Op 1 . - CDS 1018839 - 1019333 342 ## gi|238855053|ref|ZP_04645381.1| hypothetical protein LACJE0001_0961 1083 434 Op 2 . - CDS 1019326 - 1019925 723 ## COG1131 ABC-type multidrug transport system, ATPase component 1084 434 Op 3 . - CDS 1019938 - 1020192 186 ## gi|238855051|ref|ZP_04645379.1| hypothetical protein LACJE0001_0959 - Prom 1020213 - 1020272 5.4 1085 435 Op 1 . - CDS 1020279 - 1020536 127 ## gi|238855051|ref|ZP_04645379.1| hypothetical protein LACJE0001_0959 1086 435 Op 2 . - CDS 1020536 - 1021351 374 ## MPTP_1855 hypothetical protein - Term 1021359 - 1021402 2.3 1087 435 Op 3 . - CDS 1021412 - 1021828 581 ## MPTP_1854 hypothetical protein - Prom 1021925 - 1021984 6.0 + Prom 1021825 - 1021884 5.7 1088 436 Tu 1 . + CDS 1021954 - 1022775 375 ## LCRIS_00472 ranscriptional activator rgg/gadr/mutr-family + Prom 1022779 - 1022838 3.2 1089 437 Tu 1 . + CDS 1022900 - 1023601 269 ## LGAS_1055 hypothetical protein - Term 1023583 - 1023615 2.5 1090 438 Op 1 3/0.062 - CDS 1023628 - 1025151 2090 ## COG1190 Lysyl-tRNA synthetase (class II) 1091 438 Op 2 2/0.118 - CDS 1025173 - 1026201 473 ## PROTEIN SUPPORTED gi|145637283|ref|ZP_01792944.1| ribosomal protein L11 methyltransferase - Prom 1026225 - 1026284 7.5 - Term 1026229 - 1026275 1.2 1092 439 Op 1 1/0.185 - CDS 1026289 - 1027170 906 ## COG1281 Disulfide bond chaperones of the HSP33 family - Term 1027177 - 1027206 0.5 1093 439 Op 2 . - CDS 1027211 - 1029337 1206 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 1094 439 Op 3 . - CDS 1029421 - 1029888 100 ## lhv_0295 putative cell cycle protein 1095 439 Op 4 . - CDS 1029843 - 1030250 286 ## LCRIS_00281 cell cycle protein - Prom 1030270 - 1030329 4.7 1096 440 Op 1 . - CDS 1030358 - 1030657 81 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 1097 440 Op 2 . - CDS 1030677 - 1031027 267 ## PROTEIN SUPPORTED gi|161506858|ref|YP_001576812.1| putative ribosomal protein 1098 440 Op 3 . - CDS 1031024 - 1031395 341 ## LGAS_0273 septum formation initiator 1099 440 Op 4 3/0.062 - CDS 1031462 - 1031704 308 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 1100 440 Op 5 . - CDS 1031716 - 1033302 1326 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 1101 440 Op 6 7/0.005 - CDS 1033329 - 1035200 1067 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 1102 440 Op 7 . - CDS 1035203 - 1035760 738 ## COG0193 Peptidyl-tRNA hydrolase - Prom 1035836 - 1035895 8.6 + Prom 1035825 - 1035884 8.3 1103 441 Tu 1 . + CDS 1036087 - 1036614 524 ## COG0517 FOG: CBS domain + Term 1036621 - 1036670 15.1 - Term 1036609 - 1036658 15.1 1104 442 Op 1 5/0.021 - CDS 1036661 - 1037788 1317 ## COG0787 Alanine racemase 1105 442 Op 2 . - CDS 1037701 - 1038138 116 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) - Term 1038162 - 1038199 2.4 1106 443 Op 1 2/0.118 - CDS 1038209 - 1039663 1648 ## COG0513 Superfamily II DNA and RNA helicases 1107 443 Op 2 . - CDS 1039674 - 1041041 1403 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase - Prom 1041078 - 1041137 3.1 - Term 1041089 - 1041120 2.1 1108 444 Tu 1 . - CDS 1041139 - 1041396 442 ## PROTEIN SUPPORTED gi|227525693|ref|ZP_03955742.1| 50S ribosomal protein L31 type B - Prom 1041433 - 1041492 4.7 1109 445 Op 1 . - CDS 1041497 - 1041991 523 ## gi|238854502|ref|ZP_04644840.1| hypothetical protein LACJE0001_0547 1110 445 Op 2 . - CDS 1041984 - 1042181 91 ## SSUST3_1861 mutator protein 1111 445 Op 3 . - CDS 1042100 - 1042432 322 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Term 1042459 - 1042506 10.4 1112 446 Op 1 9/0.005 - CDS 1042509 - 1043744 1147 ## COG1668 ABC-type Na+ efflux pump, permease component 1113 446 Op 2 . - CDS 1043741 - 1044076 81 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 1114 446 Op 3 . - CDS 1044031 - 1044645 180 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 1044802 - 1044861 7.0 1115 447 Tu 1 . + CDS 1044793 - 1045776 1016 ## LAF_1481 hypothetical protein + Term 1045846 - 1045898 1.0 + Prom 1046755 - 1046814 6.2 1116 448 Tu 1 . + CDS 1046924 - 1047874 1362 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Prom 1048424 - 1048483 12.9 1117 449 Op 1 21/0.000 + CDS 1048542 - 1049063 511 ## COG0477 Permeases of the major facilitator superfamily 1118 449 Op 2 . + CDS 1048961 - 1050016 1114 ## COG0477 Permeases of the major facilitator superfamily 1119 449 Op 3 . + CDS 1050016 - 1050585 719 ## LCRIS_00700 hypothetical protein + Term 1050617 - 1050650 3.1 - Term 1050603 - 1050636 3.1 1120 450 Op 1 . - CDS 1050639 - 1050881 65 ## gi|238854513|ref|ZP_04644851.1| hypothetical protein LACJE0001_0559 1121 450 Op 2 . - CDS 1050901 - 1051509 581 ## COG1376 Uncharacterized protein conserved in bacteria 1122 450 Op 3 . - CDS 1051569 - 1052324 465 ## COG1085 Galactose-1-phosphate uridylyltransferase - Prom 1052368 - 1052427 9.8 - Term 1052400 - 1052433 5.1 1123 451 Tu 1 . - CDS 1052441 - 1053991 1776 ## COG0519 GMP synthase, PP-ATPase domain/subunit - Prom 1054126 - 1054185 7.6 + Prom 1054105 - 1054164 9.9 1124 452 Tu 1 . + CDS 1054338 - 1054598 195 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Prom 1054643 - 1054702 2.5 1125 453 Op 1 . + CDS 1054742 - 1054915 210 ## LAC30SC_01150 xanthine phosphoribosyltransferase (EC:2.4.2.22) 1126 453 Op 2 2/0.118 + CDS 1054915 - 1055868 303 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 1127 453 Op 3 . + CDS 1055844 - 1056197 117 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 1056218 - 1056250 2.5 + Prom 1056199 - 1056258 7.1 1128 454 Tu 1 . + CDS 1056305 - 1057729 1786 ## COG4690 Dipeptidase + Term 1057784 - 1057841 1.5 - Term 1057772 - 1057829 1.5 1129 455 Op 1 . - CDS 1057845 - 1057985 86 ## gi|238854520|ref|ZP_04644858.1| alpha/beta hydrolase superfamily enzyme 1130 455 Op 2 . - CDS 1057952 - 1058341 131 ## LBUL_0285 alpha/beta fold family hydrolase - Prom 1058378 - 1058437 5.9 - Term 1058436 - 1058468 1.0 1131 456 Op 1 45/0.000 - CDS 1058470 - 1059270 812 ## COG0842 ABC-type multidrug transport system, permease component 1132 456 Op 2 . - CDS 1059271 - 1059972 222 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 1059993 - 1060052 8.9 + Prom 1059941 - 1060000 12.2 1133 457 Op 1 . + CDS 1060068 - 1060319 372 ## Ldb0332 hypothetical protein 1134 457 Op 2 . + CDS 1060326 - 1060634 181 ## Ldb0333 hypothetical protein 1135 457 Op 3 . + CDS 1060631 - 1061947 634 ## COG0515 Serine/threonine protein kinase + Term 1062032 - 1062083 11.2 - Term 1062243 - 1062285 8.4 1136 458 Tu 1 . - CDS 1062292 - 1063557 1577 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 1063587 - 1063646 4.0 1137 459 Op 1 . - CDS 1063677 - 1064918 1561 ## COG0504 CTP synthase (UTP-ammonia lyase) 1138 459 Op 2 5/0.021 - CDS 1064885 - 1065295 534 ## COG0504 CTP synthase (UTP-ammonia lyase) - Prom 1065315 - 1065374 7.1 - Term 1065397 - 1065436 0.3 1139 460 Tu 1 . - CDS 1065438 - 1065986 809 ## COG3343 DNA-directed RNA polymerase, delta subunit - Prom 1066065 - 1066124 7.5 1140 461 Tu 1 . - CDS 1066257 - 1066439 81 ## gi|238854529|ref|ZP_04644867.1| conserved hypothetical protein - Prom 1066499 - 1066558 8.3 + Prom 1066934 - 1066993 2.8 1141 462 Tu 1 . + CDS 1067069 - 1067926 780 ## COG1078 HD superfamily phosphohydrolases + Term 1067967 - 1068008 6.6 1142 463 Tu 1 . - CDS 1067970 - 1069244 771 ## COG3464 Transposase and inactivated derivatives - Prom 1069333 - 1069392 6.6 - Term 1069381 - 1069420 8.4 1143 464 Op 1 . - CDS 1069421 - 1070386 1175 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 1070406 - 1070465 5.0 - Term 1070424 - 1070461 3.1 1144 464 Op 2 . - CDS 1070469 - 1070921 384 ## COG2851 H+/citrate symporter 1145 464 Op 3 . - CDS 1071011 - 1071805 763 ## COG2851 H+/citrate symporter 1146 464 Op 4 . - CDS 1071824 - 1073209 1675 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) 1147 464 Op 5 . - CDS 1073254 - 1074081 865 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 1074113 - 1074172 5.9 - Term 1074126 - 1074181 11.6 1148 465 Tu 1 . - CDS 1074206 - 1074439 159 ## COG4466 Uncharacterized protein conserved in bacteria - Prom 1074460 - 1074519 8.0 - Term 1074618 - 1074654 0.2 1149 466 Op 1 7/0.005 - CDS 1074680 - 1075387 649 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 1150 466 Op 2 3/0.062 - CDS 1075377 - 1075940 544 ## COG1658 Small primase-like proteins (Toprim domain) 1151 466 Op 3 8/0.005 - CDS 1075927 - 1076697 675 ## COG0084 Mg-dependent DNase 1152 466 Op 4 . - CDS 1076697 - 1078685 2529 ## COG0143 Methionyl-tRNA synthetase - Prom 1078710 - 1078769 5.4 - Term 1078721 - 1078760 4.2 1153 467 Tu 1 1/0.185 - CDS 1078774 - 1079028 261 ## COG0474 Cation transport ATPase - Prom 1079074 - 1079133 2.2 1154 468 Tu 1 . - CDS 1079142 - 1081457 2719 ## COG0474 Cation transport ATPase - Prom 1081677 - 1081736 4.5 - Term 1081515 - 1081558 1.5 1155 469 Op 1 . - CDS 1081748 - 1082284 169 ## LCRIS_00214 beta-propeller domain of methanol dehydrogenase type 1156 469 Op 2 . - CDS 1082274 - 1082756 562 ## COG2131 Deoxycytidylate deaminase 1157 469 Op 3 . - CDS 1082756 - 1083658 1059 ## COG0180 Tryptophanyl-tRNA synthetase 1158 469 Op 4 . - CDS 1083694 - 1083876 106 ## gi|313472665|ref|ZP_07813154.1| tryptophan--tRNA ligase - Prom 1083917 - 1083976 80.3 + TRNA 1083897 - 1083970 60.9 # Gly CCC 0 0 - Term 1083964 - 1083997 3.1 1159 470 Tu 1 . - CDS 1084006 - 1084602 516 ## LCRIS_00210 abortive infection protein - Prom 1084675 - 1084734 5.5 1160 471 Op 1 . - CDS 1084743 - 1085099 293 ## LCRIS_01447 hypothetical protein 1161 471 Op 2 . - CDS 1085092 - 1086402 920 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 1086430 - 1086489 11.5 - Term 1086473 - 1086509 5.2 1162 472 Op 1 . - CDS 1086714 - 1086950 226 ## LSL_0121 transcription elongation factor GreA 1163 472 Op 2 . - CDS 1086968 - 1087555 604 ## gi|238855577|ref|ZP_04645879.1| conserved hypothetical protein - Prom 1087660 - 1087719 9.0 + Prom 1087534 - 1087593 13.1 1164 473 Tu 1 . + CDS 1087696 - 1089012 1624 ## COG3579 Aminopeptidase C + Term 1089019 - 1089052 4.0 - Term 1089002 - 1089047 5.5 1165 474 Op 1 . - CDS 1089049 - 1090740 2045 ## COG4716 Myosin-crossreactive antigen - Prom 1090768 - 1090827 11.2 1166 474 Op 2 . - CDS 1090940 - 1092193 1269 ## COG3579 Aminopeptidase C - Prom 1092218 - 1092277 10.5 - TRNA 1092259 - 1092331 65.9 # Thr GGT 0 0 + Prom 1092570 - 1092629 7.4 1167 475 Op 1 . + CDS 1092705 - 1094855 1192 ## COG4485 Predicted membrane protein 1168 475 Op 2 . + CDS 1094852 - 1095145 166 ## COG4485 Predicted membrane protein + Term 1095222 - 1095255 5.1 - TRNA 1095145 - 1095217 65.9 # Thr GGT 0 0 - Term 1095210 - 1095242 4.9 1169 476 Tu 1 . - CDS 1095250 - 1096512 622 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 1096538 - 1096597 4.9 1170 477 Op 1 . - CDS 1096873 - 1097490 451 ## COG0344 Predicted membrane protein 1171 477 Op 2 . - CDS 1097493 - 1098635 1316 ## COG1316 Transcriptional regulator - Prom 1098656 - 1098715 3.1 1172 477 Op 3 . - CDS 1098726 - 1099904 1093 ## COG3328 Transposase and inactivated derivatives - Prom 1100070 - 1100129 10.3 - Term 1100108 - 1100155 12.2 1173 478 Op 1 . - CDS 1100165 - 1100857 1090 ## COG0588 Phosphoglycerate mutase 1 - Prom 1100888 - 1100947 5.5 - Term 1100922 - 1100974 8.8 1174 478 Op 2 . - CDS 1100986 - 1102896 1880 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 1103003 - 1103062 9.4 1175 479 Op 1 3/0.062 + CDS 1103149 - 1103709 440 ## COG2188 Transcriptional regulators 1176 479 Op 2 . + CDS 1103719 - 1105374 1316 ## COG0366 Glycosidases 1177 479 Op 3 . + CDS 1105368 - 1105556 87 ## - Term 1105374 - 1105422 11.1 1178 480 Op 1 36/0.000 - CDS 1105569 - 1108112 2593 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 1179 480 Op 2 . - CDS 1108130 - 1108831 308 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 1108863 - 1108922 9.6 - Term 1108887 - 1108937 8.2 1180 481 Op 1 12/0.000 - CDS 1108938 - 1109396 463 ## COG3610 Uncharacterized conserved protein 1181 481 Op 2 . - CDS 1109398 - 1110165 629 ## COG2966 Uncharacterized conserved protein 1182 481 Op 3 . - CDS 1110177 - 1111718 1631 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 1183 481 Op 4 . - CDS 1111777 - 1112151 204 ## LCRIS_01784 hypothetical protein - Prom 1112289 - 1112348 9.1 + Prom 1112271 - 1112330 12.3 1184 482 Tu 1 . + CDS 1112472 - 1112954 778 ## LC705_00278 hypothetical protein + Term 1112987 - 1113038 12.6 - Term 1112980 - 1113020 4.2 1185 483 Op 1 . - CDS 1113024 - 1114466 1286 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 1114486 - 1114545 3.0 1186 483 Op 2 . - CDS 1114562 - 1114810 388 ## COG0475 Kef-type K+ transport systems, membrane components - Term 1114836 - 1114883 9.6 1187 483 Op 3 . - CDS 1114890 - 1117043 1719 ## COG1705 Muramidase (flagellum-specific) + Prom 1116999 - 1117058 8.4 1188 484 Op 1 . + CDS 1117291 - 1117500 142 ## 1189 484 Op 2 . + CDS 1117422 - 1118177 789 ## LBUL_0194 lipoprotein + Prom 1118188 - 1118247 4.4 1190 485 Op 1 . + CDS 1118267 - 1118461 162 ## FI9785_219 hypothetical protein 1191 485 Op 2 . + CDS 1118476 - 1118670 82 ## lhv_0177 hypothetical protein + Term 1118714 - 1118743 -0.2 + Prom 1118695 - 1118754 3.9 1192 486 Tu 1 . + CDS 1118774 - 1120816 2170 ## COG3158 K+ transporter + Term 1120817 - 1120863 13.3 - Term 1120805 - 1120851 13.3 1193 487 Op 1 . - CDS 1120860 - 1122371 1817 ## COG3590 Predicted metalloendopeptidase 1194 487 Op 2 . - CDS 1122368 - 1122802 652 ## COG3590 Predicted metalloendopeptidase - Prom 1122825 - 1122884 6.4 - Term 1122869 - 1122899 -1.0 1195 488 Op 1 1/0.185 - CDS 1122905 - 1124119 1094 ## COG0477 Permeases of the major facilitator superfamily - Prom 1124140 - 1124199 7.3 - Term 1124160 - 1124205 7.3 1196 488 Op 2 . - CDS 1124210 - 1125502 1475 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 1125586 - 1125645 5.3 - Term 1125632 - 1125668 5.1 1197 489 Op 1 . - CDS 1125834 - 1126241 297 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 1198 489 Op 2 12/0.000 - CDS 1126250 - 1126966 805 ## COG0602 Organic radical activating enzymes 1199 489 Op 3 . - CDS 1126956 - 1129166 2559 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 1129189 - 1129248 7.2 - Term 1129329 - 1129358 1.4 1200 490 Tu 1 . - CDS 1129385 - 1131334 2243 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) - Prom 1131356 - 1131415 8.5 1201 491 Tu 1 . - CDS 1131439 - 1132119 637 ## LBUL_0182 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase - Prom 1132241 - 1132300 4.5 1202 492 Op 1 . - CDS 1132368 - 1132814 342 ## LBUL_0182 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase - Term 1132826 - 1132855 0.5 1203 492 Op 2 . - CDS 1132867 - 1133352 610 ## LAC30SC_00715 hypothetical protein - Prom 1133372 - 1133431 4.8 - Term 1133375 - 1133419 8.1 1204 493 Op 1 8/0.005 - CDS 1133433 - 1134245 801 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 1205 493 Op 2 9/0.005 - CDS 1134245 - 1135045 1031 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 1206 493 Op 3 15/0.000 - CDS 1135038 - 1135811 332 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 1207 493 Op 4 . - CDS 1135844 - 1136773 1100 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component - Prom 1136996 - 1137055 6.1 - Term 1137082 - 1137125 8.7 1208 494 Tu 1 . - CDS 1137144 - 1137626 634 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 1137694 - 1137753 6.5 + Prom 1137673 - 1137732 9.2 1209 495 Tu 1 . + CDS 1137759 - 1138559 606 ## COG2365 Protein tyrosine/serine phosphatase + Prom 1138570 - 1138629 9.7 1210 496 Tu 1 . + CDS 1138669 - 1139145 623 ## LBA0145 2-deoxyribosyltransferase + Term 1139209 - 1139242 4.5 - TRNA 1139236 - 1139311 83.7 # Asn GTT 0 0 - 5S_RRNA 1139324 - 1139438 96.0 # EU184020 [D:4881..4998] # 5S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. - LSU_RRNA 1139496 - 1140837 93.0 # Y17360 [D:1..3560] # 23S ribosomal RNA # Lactobacillus amylolyticus DSM 11664 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. - LSU_RRNA 1140934 - 1142056 92.0 # Y17360 [D:1..3560] # 23S ribosomal RNA # Lactobacillus amylolyticus DSM 11664 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. - SSU_RRNA 1142628 - 1143031 99.0 # AY959136 [D:1..1540] # 16S ribosomal RNA # uncultured bacterium # Bacteria; environmental samples. - SSU_RRNA 1143132 - 1144230 99.0 # AY959136 [D:1..1540] # 16S ribosomal RNA # uncultured bacterium # Bacteria; environmental samples. - Term 1144816 - 1144855 5.0 1211 497 Tu 1 . - CDS 1144861 - 1145697 907 ## LCRIS_01884 D-ala, D-ala ligase - Prom 1145933 - 1145992 7.3 1212 498 Tu 1 . + CDS 1145827 - 1147068 1190 ## COG0477 Permeases of the major facilitator superfamily 1213 499 Op 1 . - CDS 1147043 - 1148197 538 ## COG0477 Permeases of the major facilitator superfamily 1214 499 Op 2 . - CDS 1148155 - 1148280 79 ## gi|238855418|ref|ZP_04645728.1| transporter, major facilitator family - Prom 1148486 - 1148545 5.8 + Prom 1148269 - 1148328 2.9 1215 500 Tu 1 . + CDS 1148375 - 1149205 863 ## LDBND_2022 transcriptional regulator - Term 1149202 - 1149237 3.1 1216 501 Op 1 20/0.000 - CDS 1149261 - 1150118 1092 ## COG3833 ABC-type maltose transport systems, permease component 1217 501 Op 2 19/0.000 - CDS 1150121 - 1151479 1293 ## COG1175 ABC-type sugar transport systems, permease components 1218 501 Op 3 3/0.062 - CDS 1151538 - 1152752 1693 ## COG2182 Maltose-binding periplasmic proteins/domains 1219 501 Op 4 3/0.062 - CDS 1152772 - 1154361 1402 ## COG0366 Glycosidases 1220 501 Op 5 3/0.062 - CDS 1154378 - 1155499 1085 ## COG3839 ABC-type sugar transport systems, ATPase components 1221 501 Op 6 1/0.185 - CDS 1155505 - 1155942 487 ## COG0637 Predicted phosphatase/phosphohexomutase 1222 501 Op 7 11/0.000 - CDS 1155957 - 1156175 350 ## COG0637 Predicted phosphatase/phosphohexomutase 1223 501 Op 8 3/0.062 - CDS 1156160 - 1158427 2700 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) - Prom 1158447 - 1158506 5.0 1224 502 Op 1 7/0.005 - CDS 1158542 - 1160248 1665 ## COG0366 Glycosidases 1225 502 Op 2 7/0.005 - CDS 1160250 - 1161665 1057 ## COG0366 Glycosidases 1226 502 Op 3 3/0.062 - CDS 1161644 - 1161892 249 ## COG0366 Glycosidases - Prom 1161919 - 1161978 6.1 - Term 1161950 - 1162000 10.4 1227 503 Op 1 2/0.118 - CDS 1162053 - 1162433 401 ## COG1609 Transcriptional regulators 1228 503 Op 2 . - CDS 1162520 - 1163002 504 ## COG1609 Transcriptional regulators 1229 503 Op 3 . - CDS 1163002 - 1163766 591 ## COG2365 Protein tyrosine/serine phosphatase 1230 503 Op 4 . - CDS 1163780 - 1165276 1479 ## COG0554 Glycerol kinase - Prom 1165309 - 1165368 8.1 + Prom 1165327 - 1165386 6.1 1231 504 Op 1 . + CDS 1165407 - 1166219 893 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 1232 504 Op 2 . + CDS 1166272 - 1166904 657 ## COG3442 Predicted glutamine amidotransferase + Term 1166966 - 1167005 1.5 - Term 1166952 - 1166995 7.8 1233 505 Tu 1 1/0.185 - CDS 1167000 - 1167887 828 ## COG0015 Adenylosuccinate lyase - Prom 1167941 - 1168000 2.5 1234 506 Op 1 1/0.185 - CDS 1168019 - 1168294 346 ## COG0015 Adenylosuccinate lyase 1235 506 Op 2 . - CDS 1168294 - 1169586 1676 ## COG0104 Adenylosuccinate synthase - Prom 1169619 - 1169678 4.7 + Prom 1169682 - 1169741 7.4 1236 507 Tu 1 . + CDS 1169767 - 1170759 1079 ## COG0516 IMP dehydrogenase/GMP reductase + Term 1170762 - 1170812 7.2 1237 508 Tu 1 . - CDS 1170778 - 1171686 888 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 1171726 - 1171785 7.5 - Term 1171757 - 1171807 9.2 1238 509 Op 1 1/0.185 - CDS 1171819 - 1173228 1490 ## COG0531 Amino acid transporters 1239 509 Op 2 . - CDS 1173242 - 1173973 860 ## COG2071 Predicted glutamine amidotransferases 1240 509 Op 3 . - CDS 1174053 - 1174703 748 ## COG1418 Predicted HD superfamily hydrolase - Prom 1174728 - 1174787 1.9 - Term 1174746 - 1174781 4.2 1241 509 Op 4 . - CDS 1174792 - 1176831 1340 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 1176908 - 1176967 5.5 - Term 1176978 - 1177020 6.3 1242 510 Op 1 . - CDS 1177031 - 1177912 542 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold 1243 510 Op 2 . - CDS 1177878 - 1179269 1435 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 1179347 - 1179406 7.4 + Prom 1179296 - 1179355 7.9 1244 511 Op 1 . + CDS 1179376 - 1179594 228 ## gi|313472732|ref|ZP_07813220.1| conserved hypothetical protein 1245 511 Op 2 21/0.000 + CDS 1179656 - 1180453 587 ## COG0477 Permeases of the major facilitator superfamily 1246 511 Op 3 21/0.000 + CDS 1180408 - 1180872 204 ## COG0477 Permeases of the major facilitator superfamily 1247 511 Op 4 21/0.000 + CDS 1180859 - 1181377 437 ## COG0477 Permeases of the major facilitator superfamily 1248 511 Op 5 2/0.118 + CDS 1181512 - 1182042 381 ## COG0477 Permeases of the major facilitator superfamily + Prom 1182236 - 1182295 12.4 1249 512 Tu 1 . + CDS 1182325 - 1183314 1363 ## COG1087 UDP-glucose 4-epimerase + Term 1183346 - 1183381 5.1 - Term 1183332 - 1183367 5.1 1250 513 Op 1 . - CDS 1183369 - 1184304 653 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 1251 513 Op 2 . - CDS 1184288 - 1185619 1085 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) 1252 513 Op 3 . - CDS 1185612 - 1185785 192 ## LGAS_1816 D-alanine--poly(phosphoribitol) ligase subunit 2 (EC:6.1.1.13) - Prom 1185817 - 1185876 1.7 1253 514 Op 1 6/0.005 - CDS 1185880 - 1187109 1061 ## COG1696 Predicted membrane protein involved in D-alanine export 1254 514 Op 2 . - CDS 1187106 - 1188614 1512 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 1255 514 Op 3 . - CDS 1188630 - 1188791 129 ## gi|256851640|ref|ZP_05557028.1| predicted protein - Prom 1188812 - 1188871 4.2 1256 515 Op 1 . - CDS 1188884 - 1189183 177 ## gi|238855454|ref|ZP_04645764.1| hypothetical protein LACJE0001_1052 1257 515 Op 2 . - CDS 1189213 - 1190304 984 ## LBA1927 hypothetical protein - Prom 1190394 - 1190453 5.0 - Term 1190403 - 1190439 4.2 1258 516 Tu 1 . - CDS 1190457 - 1191986 1984 ## COG0281 Malic enzyme - Prom 1192170 - 1192229 9.4 + Prom 1192398 - 1192457 3.2 1259 517 Op 1 . + CDS 1192588 - 1192749 122 ## gi|260665177|ref|ZP_05866026.1| malolactic regulator 1260 517 Op 2 . + CDS 1192809 - 1193063 72 ## LBA1074 malolactic regulator + Term 1193260 - 1193293 4.0 + Prom 1193312 - 1193371 12.1 1261 518 Op 1 . + CDS 1193603 - 1193797 63 ## 1262 518 Op 2 1/0.185 + CDS 1193859 - 1194326 456 ## COG0517 FOG: CBS domain + Prom 1194330 - 1194389 10.6 1263 519 Op 1 2/0.118 + CDS 1194457 - 1194993 566 ## COG2217 Cation transport ATPase 1264 519 Op 2 . + CDS 1194993 - 1196312 1299 ## COG2217 Cation transport ATPase 1265 520 Op 1 . + CDS 1196417 - 1197574 963 ## COG0475 Kef-type K+ transport systems, membrane components 1266 520 Op 2 . + CDS 1197647 - 1197844 293 ## gi|238855462|ref|ZP_04645772.1| integral membrane protein + Prom 1197888 - 1197947 3.8 1267 521 Tu 1 . + CDS 1197988 - 1198470 441 ## COG1434 Uncharacterized conserved protein + Term 1198576 - 1198608 -0.3 + Prom 1198778 - 1198837 9.8 1268 522 Op 1 1/0.185 + CDS 1198876 - 1199430 645 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component 1269 522 Op 2 . + CDS 1199568 - 1199813 257 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component + Term 1199854 - 1199887 3.1 + Prom 1200114 - 1200173 4.8 1270 523 Op 1 2/0.118 + CDS 1200266 - 1201282 1204 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 1271 523 Op 2 2/0.118 + CDS 1201335 - 1202141 919 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein + Prom 1202443 - 1202502 12.8 1272 524 Op 1 15/0.000 + CDS 1202611 - 1203708 1337 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein + Term 1203737 - 1203770 2.2 + Prom 1203710 - 1203769 3.1 1273 524 Op 2 . + CDS 1203792 - 1204010 148 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 1274 524 Op 3 24/0.000 + CDS 1204049 - 1205326 179 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 1275 524 Op 4 26/0.000 + CDS 1205409 - 1206470 1287 ## COG4603 ABC-type uncharacterized transport system, permease component 1276 524 Op 5 . + CDS 1206470 - 1207426 1070 ## COG1079 Uncharacterized ABC-type transport system, permease component + Term 1207427 - 1207478 12.4 + Prom 1207440 - 1207499 5.1 1277 525 Tu 1 . + CDS 1207525 - 1208244 765 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Term 1208265 - 1208308 4.2 + Prom 1208304 - 1208363 4.1 1278 526 Op 1 3/0.062 + CDS 1208400 - 1209050 810 ## COG1428 Deoxynucleoside kinases 1279 526 Op 2 . + CDS 1209075 - 1209746 810 ## COG1428 Deoxynucleoside kinases + Term 1209749 - 1209804 12.9 + Prom 1210159 - 1210218 2.2 1280 527 Op 1 3/0.062 + CDS 1210246 - 1210467 135 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 1281 527 Op 2 . + CDS 1210485 - 1211435 589 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 1211445 - 1211492 7.5 - Term 1211437 - 1211470 3.1 1282 528 Op 1 35/0.000 - CDS 1211474 - 1212151 802 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 1283 528 Op 2 . - CDS 1212235 - 1213059 605 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 1284 528 Op 3 . - CDS 1213056 - 1215269 1070 ## COG0515 Serine/threonine protein kinase - Prom 1215302 - 1215361 5.6 1285 529 Tu 1 . - CDS 1215928 - 1217106 1093 ## COG3328 Transposase and inactivated derivatives - Prom 1217141 - 1217200 6.7 1286 530 Op 1 . - CDS 1217671 - 1217865 134 ## lhv_1688 ABC transporter 1287 530 Op 2 . - CDS 1217924 - 1218664 498 ## gi|238855316|ref|ZP_04645632.1| hypothetical protein LACJE0001_1454 1288 531 Tu 1 . - CDS 1219282 - 1219530 233 ## COG1131 ABC-type multidrug transport system, ATPase component - Prom 1219575 - 1219634 6.5 - Term 1219612 - 1219652 2.0 1289 532 Op 1 . - CDS 1219696 - 1220457 1068 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 1290 532 Op 2 . - CDS 1220481 - 1220921 469 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases - Prom 1220959 - 1221018 11.3 + Prom 1220915 - 1220974 5.5 1291 533 Op 1 4/0.036 + CDS 1221146 - 1222453 1715 ## COG2252 Permeases + Term 1222498 - 1222542 0.7 + Prom 1222463 - 1222522 7.5 1292 533 Op 2 . + CDS 1222549 - 1223859 1503 ## COG2252 Permeases + Term 1223868 - 1223901 4.0 - Term 1223856 - 1223889 4.0 1293 534 Op 1 . - CDS 1223894 - 1225405 1246 ## COG0038 Chloride channel protein EriC - Prom 1225426 - 1225485 2.9 1294 534 Op 2 . - CDS 1225488 - 1226447 1149 ## COG0679 Predicted permeases - Prom 1226474 - 1226533 5.4 - Term 1226532 - 1226573 9.0 1295 535 Op 1 . - CDS 1226609 - 1227997 1770 ## COG0362 6-phosphogluconate dehydrogenase - Prom 1228021 - 1228080 8.6 - Term 1228034 - 1228078 11.1 1296 535 Op 2 . - CDS 1228096 - 1229904 2226 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Prom 1230055 - 1230114 8.2 - Term 1229915 - 1229971 1.5 1297 536 Op 1 . - CDS 1230209 - 1230430 195 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 1298 536 Op 2 11/0.000 - CDS 1230508 - 1232112 1596 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 1299 536 Op 3 . - CDS 1232122 - 1232580 452 ## COG0486 Predicted GTPase 1300 536 Op 4 . - CDS 1232556 - 1233293 542 ## COG0486 Predicted GTPase 1301 536 Op 5 10/0.000 - CDS 1233368 - 1233502 140 ## COG0486 Predicted GTPase - Prom 1233529 - 1233588 2.2 - Term 1233516 - 1233570 3.8 1302 536 Op 6 22/0.000 - CDS 1233596 - 1234453 830 ## COG0706 Preprotein translocase subunit YidC 1303 536 Op 7 . - CDS 1234455 - 1234823 276 ## COG0594 RNase P protein component - Term 1234844 - 1234874 -0.5 1304 536 Op 8 . - CDS 1234876 - 1235016 234 ## PROTEIN SUPPORTED gi|227525161|ref|ZP_03955210.1| 50S ribosomal protein L34 + Prom 1235436 - 1235495 1.8 1305 537 Op 1 . + CDS 1235521 - 1235802 207 ## LDBND_0001 chromosomal replication initiator protein DnaA 1306 537 Op 2 16/0.000 + CDS 1235832 - 1236845 986 ## COG0593 ATPase involved in DNA replication initiation + Prom 1236921 - 1236980 2.3 1307 537 Op 3 6/0.005 + CDS 1237011 - 1238141 1125 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) + Term 1238148 - 1238197 7.9 + Prom 1238270 - 1238329 7.8 1308 538 Op 1 9/0.005 + CDS 1238350 - 1238565 170 ## COG2501 Uncharacterized conserved protein 1309 538 Op 2 . + CDS 1238568 - 1238855 310 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) + Term 1238857 - 1238923 3.3 + Prom 1238885 - 1238944 3.3 1310 539 Op 1 . + CDS 1238969 - 1239229 189 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 1311 539 Op 2 . + CDS 1239256 - 1239447 62 ## gi|238855509|ref|ZP_04645814.1| DNA replication and repair protein RecF 1312 539 Op 3 9/0.005 + CDS 1239456 - 1239656 129 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 1313 539 Op 4 24/0.000 + CDS 1239691 - 1241646 2588 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 1314 539 Op 5 . + CDS 1241658 - 1244135 3119 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 1244251 - 1244309 -0.8 + Prom 1244246 - 1244305 6.0 1315 540 Op 1 24/0.000 + CDS 1244340 - 1244633 500 ## PROTEIN SUPPORTED gi|238855512|ref|ZP_04645817.1| ribosomal protein S6 1316 540 Op 2 21/0.000 + CDS 1244670 - 1245185 745 ## COG0629 Single-stranded DNA-binding protein 1317 540 Op 3 . + CDS 1245209 - 1245445 396 ## PROTEIN SUPPORTED gi|227525170|ref|ZP_03955219.1| 30S ribosomal protein S18 + Term 1245461 - 1245501 7.4 + Prom 1245485 - 1245544 8.6 1318 541 Op 1 . + CDS 1245578 - 1247080 466 ## PROTEIN SUPPORTED gi|194246575|ref|YP_002004214.1| 50S ribosomal protein L9 1319 541 Op 2 . + CDS 1247077 - 1247595 287 ## PROTEIN SUPPORTED gi|85057286|ref|YP_456202.1| exopolyphosphatase-related protein 1320 541 Op 3 . + CDS 1247615 - 1247830 291 ## PROTEIN SUPPORTED gi|227525172|ref|ZP_03955221.1| 50S ribosomal protein L9 1321 541 Op 4 . + CDS 1247820 - 1248065 402 ## PROTEIN SUPPORTED gi|238855516|ref|ZP_04645821.1| ribosomal protein L9 1322 541 Op 5 . + CDS 1248081 - 1249448 1597 ## COG0305 Replicative DNA helicase + Term 1249458 - 1249491 4.0 - Term 1249446 - 1249479 4.0 1323 542 Op 1 . - CDS 1249484 - 1249729 289 ## LBA0019 hypothetical protein - Prom 1249775 - 1249834 2.4 1324 542 Op 2 . - CDS 1249837 - 1250631 904 ## lhv_0025 hypothetical protein - Prom 1250656 - 1250715 9.8 - Term 1250676 - 1250718 7.3 1325 543 Op 1 . - CDS 1250722 - 1251429 942 ## COG1285 Uncharacterized membrane protein - Prom 1251471 - 1251530 5.4 1326 543 Op 2 . - CDS 1251570 - 1252748 1093 ## COG3328 Transposase and inactivated derivatives - Prom 1252978 - 1253037 76.6 + TRNA 1252961 - 1253033 84.2 # Thr AGT 0 0 - Term 1253089 - 1253141 7.3 1327 544 Op 1 6/0.005 - CDS 1253146 - 1253433 384 ## COG3093 Plasmid maintenance system antidote protein 1328 544 Op 2 . - CDS 1253447 - 1253731 159 ## COG3549 Plasmid maintenance system killer protein - Prom 1253754 - 1253813 9.7 + Prom 1254300 - 1254359 5.5 1329 545 Op 1 . + CDS 1254391 - 1255056 474 ## gi|238855814|ref|ZP_04646106.1| hypothetical protein LACJE0001_1600 1330 545 Op 2 . + CDS 1255071 - 1255535 527 ## LSL_0943 hypothetical protein + Term 1255594 - 1255630 5.2 + Prom 1255613 - 1255672 10.6 1331 546 Op 1 . + CDS 1255709 - 1257148 1640 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 1332 546 Op 2 . + CDS 1257165 - 1257641 326 ## GY4MC1_1444 hypothetical protein 1333 546 Op 3 . + CDS 1257625 - 1258473 763 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 1258496 - 1258535 8.6 - Term 1258484 - 1258523 8.6 1334 547 Tu 1 . - CDS 1258529 - 1259260 370 ## COG2188 Transcriptional regulators - Prom 1259319 - 1259378 4.5 + Prom 1259251 - 1259310 5.9 1335 548 Op 1 8/0.005 + CDS 1259406 - 1259723 531 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 1336 548 Op 2 13/0.000 + CDS 1259735 - 1260121 469 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 1337 548 Op 3 . + CDS 1260150 - 1260920 1054 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 1338 548 Op 4 . + CDS 1260950 - 1261237 391 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 1339 548 Op 5 . + CDS 1261237 - 1261509 283 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 1340 548 Op 6 23/0.000 + CDS 1261584 - 1262084 330 ## COG2963 Transposase and inactivated derivatives 1341 548 Op 7 . + CDS 1261900 - 1262973 922 ## COG2801 Transposase and inactivated derivatives + Prom 1262993 - 1263052 6.6 1342 549 Tu 1 . + CDS 1263076 - 1263888 499 ## lhv_0259 hypothetical protein + Prom 1263908 - 1263967 3.3 1343 550 Op 1 . + CDS 1263995 - 1264801 591 ## lhv_0044 putative esterase 1344 550 Op 2 . + CDS 1264877 - 1265329 406 ## COG1959 Predicted transcriptional regulator 1345 550 Op 3 . + CDS 1265356 - 1266354 932 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 1266381 - 1266414 -0.9 + Prom 1266404 - 1266463 7.8 1346 551 Op 1 5/0.021 + CDS 1266663 - 1267160 568 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 1347 551 Op 2 . + CDS 1267160 - 1267804 634 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 1348 551 Op 3 . + CDS 1267873 - 1268151 207 ## COG0708 Exonuclease III 1349 551 Op 4 . + CDS 1268058 - 1268699 838 ## COG0708 Exonuclease III + Term 1268706 - 1268735 0.5 1350 551 Op 5 . + CDS 1268745 - 1271555 1974 ## COG1061 DNA or RNA helicases of superfamily II 1351 551 Op 6 . + CDS 1271605 - 1271901 419 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 1352 551 Op 7 . + CDS 1271901 - 1272461 649 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 1272475 - 1272504 1.4 + Prom 1272464 - 1272523 7.0 1353 551 Op 8 . + CDS 1272543 - 1273256 559 ## COG5523 Predicted integral membrane protein + Term 1273274 - 1273332 11.5 + Prom 1273268 - 1273327 9.4 1354 552 Op 1 . + CDS 1273362 - 1273688 522 ## gi|238855795|ref|ZP_04646087.1| conserved hypothetical protein + Term 1273721 - 1273752 2.7 + Prom 1273740 - 1273799 7.6 1355 552 Op 2 . + CDS 1273830 - 1274537 741 ## COG1011 Predicted hydrolase (HAD superfamily) + Term 1274551 - 1274610 12.0 - Term 1274551 - 1274585 3.2 1356 553 Tu 1 . - CDS 1274662 - 1275324 811 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 1275353 - 1275412 6.3 - Term 1275526 - 1275560 5.5 1357 554 Tu 1 . - CDS 1275675 - 1276676 1494 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 1276746 - 1276805 6.6 - Term 1276750 - 1276798 -0.7 1358 555 Op 1 . - CDS 1276844 - 1277086 379 ## COG0054 Riboflavin synthase beta-chain 1359 555 Op 2 18/0.000 - CDS 1277083 - 1277307 240 ## COG0054 Riboflavin synthase beta-chain 1360 555 Op 3 15/0.000 - CDS 1277325 - 1278500 1306 ## COG0807 GTP cyclohydrolase II 1361 555 Op 4 16/0.000 - CDS 1278503 - 1279108 605 ## COG0307 Riboflavin synthase alpha chain 1362 555 Op 5 . - CDS 1279101 - 1280180 893 ## COG0117 Pyrimidine deaminase - Prom 1280406 - 1280465 8.4 1363 556 Tu 1 . - CDS 1280551 - 1281729 1093 ## COG3328 Transposase and inactivated derivatives - Prom 1281886 - 1281945 7.6 + Prom 1281776 - 1281835 8.0 1364 557 Tu 1 . + CDS 1282032 - 1283273 1488 ## COG1114 Branched-chain amino acid permeases + Term 1283278 - 1283324 9.1 - Term 1283271 - 1283306 5.3 1365 558 Tu 1 . - CDS 1283314 - 1284237 795 ## COG0583 Transcriptional regulator - Prom 1284304 - 1284363 8.9 + Prom 1284268 - 1284327 8.3 1366 559 Tu 1 . + CDS 1284402 - 1286192 2188 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 1286202 - 1286235 5.4 - Term 1286183 - 1286230 15.2 1367 560 Tu 1 . - CDS 1286243 - 1286464 374 ## COG4892 Predicted heme/steroid binding protein - Prom 1286708 - 1286767 7.8 - TRNA 1286617 - 1286692 85.6 # Lys CTT 0 0 + Prom 1286785 - 1286844 6.2 1368 561 Tu 1 . + CDS 1286901 - 1287743 857 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 1287786 - 1287837 5.4 - Term 1287780 - 1287817 3.2 1369 562 Tu 1 . - CDS 1287823 - 1288686 545 ## COG0583 Transcriptional regulator - Prom 1288781 - 1288840 7.6 + Prom 1288644 - 1288703 6.0 1370 563 Tu 1 . + CDS 1288808 - 1289323 489 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Prom 1289327 - 1289386 3.4 1371 564 Tu 1 . + CDS 1289424 - 1290725 1427 ## COG0477 Permeases of the major facilitator superfamily - TRNA 1290787 - 1290862 85.6 # Lys CTT 0 0 + Prom 1290896 - 1290955 7.5 1372 565 Op 1 . + CDS 1290998 - 1291711 1022 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 1373 565 Op 2 . + CDS 1291731 - 1292108 283 ## lhv_0096 putative histidine kinase 1374 565 Op 3 . + CDS 1292177 - 1293256 947 ## COG5002 Signal transduction histidine kinase 1375 565 Op 4 . + CDS 1293277 - 1293609 445 ## COG5002 Signal transduction histidine kinase 1376 565 Op 5 . + CDS 1293599 - 1293964 198 ## LA2_00515 hypothetical protein 1377 565 Op 6 . + CDS 1293937 - 1294371 150 ## LAC30SC_00385 hypothetical protein 1378 565 Op 7 . + CDS 1294470 - 1294949 373 ## LBA0080 hypothetical protein 1379 565 Op 8 4/0.036 + CDS 1294953 - 1295756 622 ## COG4853 Uncharacterized protein conserved in bacteria 1380 565 Op 9 3/0.062 + CDS 1295850 - 1296587 637 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 1381 565 Op 10 1/0.185 + CDS 1296650 - 1297924 1603 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 1297939 - 1297984 9.2 + Prom 1298185 - 1298244 9.0 1382 566 Tu 1 . + CDS 1298389 - 1298868 537 ## COG1576 Uncharacterized conserved protein + Term 1298881 - 1298920 6.0 + Prom 1298890 - 1298949 10.9 1383 567 Tu 1 . + CDS 1299042 - 1300505 1372 ## COG1193 Mismatch repair ATPase (MutS family) + Term 1300673 - 1300740 8.2 + Prom 1300624 - 1300683 5.4 1384 568 Op 1 . + CDS 1300926 - 1301693 296 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 1385 568 Op 2 . + CDS 1301761 - 1302432 554 ## LJ0601 hypothetical protein 1386 568 Op 3 . + CDS 1302432 - 1303148 548 ## LJ0602 hypothetical protein 1387 568 Op 4 . + CDS 1303214 - 1303765 532 ## LDBND_1331 ABC multidrug transporter, ATPase and permease component 1388 568 Op 5 . + CDS 1303789 - 1304784 836 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 1304814 - 1304864 8.2 + Prom 1305038 - 1305097 5.5 1389 569 Tu 1 . + CDS 1305239 - 1305490 288 ## gi|260664982|ref|ZP_05865832.1| predicted protein - Term 1305528 - 1305566 -0.9 1390 570 Op 1 . - CDS 1305597 - 1306244 278 ## LJ0072 ABC transporter permease component 1391 570 Op 2 . - CDS 1306219 - 1307595 940 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 1307709 - 1307768 5.9 + Prom 1307719 - 1307778 10.1 1392 571 Op 1 . + CDS 1307802 - 1309274 1696 ## COG0477 Permeases of the major facilitator superfamily 1393 571 Op 2 . + CDS 1309316 - 1310212 578 ## lhv_0105 putative regulatory protein + Prom 1310221 - 1310280 4.1 1394 571 Op 3 . + CDS 1310301 - 1312076 1360 ## COG4907 Predicted membrane protein + Term 1312128 - 1312168 5.1 + Prom 1312177 - 1312236 5.3 1395 572 Op 1 9/0.005 + CDS 1312262 - 1312756 576 ## COG1760 L-serine deaminase 1396 572 Op 2 . + CDS 1312823 - 1313704 887 ## COG1760 L-serine deaminase 1397 572 Op 3 . + CDS 1313716 - 1314030 466 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme + Term 1314048 - 1314081 3.1 - Term 1314034 - 1314067 3.1 1398 573 Op 1 3/0.062 - CDS 1314072 - 1314968 909 ## COG0501 Zn-dependent protease with chaperone function 1399 573 Op 2 . - CDS 1314972 - 1315532 750 ## COG1704 Uncharacterized conserved protein - Prom 1315563 - 1315622 6.4 1400 574 Tu 1 . - CDS 1315629 - 1316735 960 ## COG0471 Di- and tricarboxylate transporters - Prom 1316826 - 1316885 5.9 + Prom 1316827 - 1316886 5.3 1401 575 Tu 1 . + CDS 1316928 - 1317329 631 ## LAC30SC_00460 hypothetical protein + Term 1317542 - 1317589 -0.1 + Prom 1317538 - 1317597 6.0 1402 576 Tu 1 . + CDS 1317628 - 1317762 174 ## + Term 1317775 - 1317814 6.1 + Prom 1317804 - 1317863 11.6 1403 577 Op 1 . + CDS 1317902 - 1318543 701 ## COG1896 Predicted hydrolases of HD superfamily 1404 577 Op 2 . + CDS 1318543 - 1319457 606 ## LAC30SC_00505 hypothetical protein + Prom 1319475 - 1319534 6.2 1405 578 Op 1 2/0.118 + CDS 1319574 - 1320056 466 ## COG1609 Transcriptional regulators 1406 578 Op 2 6/0.005 + CDS 1320134 - 1320556 513 ## COG1609 Transcriptional regulators 1407 578 Op 3 35/0.000 + CDS 1320634 - 1321920 1505 ## COG1653 ABC-type sugar transport system, periplasmic component 1408 578 Op 4 38/0.000 + CDS 1321941 - 1322816 1012 ## COG1175 ABC-type sugar transport systems, permease components 1409 578 Op 5 . + CDS 1322819 - 1323664 810 ## COG0395 ABC-type sugar transport system, permease component 1410 578 Op 6 . + CDS 1323664 - 1324179 545 ## COG1621 Beta-fructosidases (levanase/invertase) + Prom 1324206 - 1324265 1.6 1411 579 Tu 1 . + CDS 1324287 - 1324658 296 ## COG1621 Beta-fructosidases (levanase/invertase) + Prom 1324862 - 1324921 4.9 1412 580 Tu 1 . + CDS 1324951 - 1326054 1187 ## COG3839 ABC-type sugar transport systems, ATPase components + Term 1326085 - 1326131 4.8 + Prom 1326160 - 1326219 2.7 1413 581 Tu 1 . + CDS 1326354 - 1326527 177 ## gi|260665004|ref|ZP_05865854.1| predicted protein + Term 1326550 - 1326576 -1.0 - Term 1326537 - 1326563 -1.0 1414 582 Tu 1 . - CDS 1326598 - 1327191 560 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 1327222 - 1327281 8.2 + Prom 1327203 - 1327262 10.6 1415 583 Op 1 . + CDS 1327284 - 1327454 225 ## gi|238855869|ref|ZP_04646158.1| hypothetical protein LACJE0001_0353 1416 583 Op 2 . + CDS 1327463 - 1327954 413 ## COG3542 Uncharacterized conserved protein + Term 1328193 - 1328241 1.5 - Term 1327935 - 1327969 6.2 1417 584 Tu 1 . - CDS 1327970 - 1328269 367 ## LA2_08640 hypothetical protein - Prom 1328345 - 1328404 5.8 - Term 1328312 - 1328343 0.1 1418 585 Op 1 13/0.000 - CDS 1328406 - 1329242 882 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 1419 585 Op 2 13/0.000 - CDS 1329244 - 1330095 1233 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 1420 585 Op 3 9/0.005 - CDS 1330123 - 1330626 770 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 1421 585 Op 4 . - CDS 1330639 - 1331073 612 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 1331231 - 1331290 5.6 + Prom 1331059 - 1331118 6.2 1422 586 Op 1 . + CDS 1331270 - 1331434 74 ## gi|238855876|ref|ZP_04646165.1| Cof protein 1423 586 Op 2 . + CDS 1331410 - 1332057 697 ## COG0561 Predicted hydrolases of the HAD superfamily + Prom 1332075 - 1332134 8.8 1424 587 Op 1 1/0.185 + CDS 1332179 - 1333009 737 ## COG1879 ABC-type sugar transport system, periplasmic component 1425 587 Op 2 . + CDS 1333009 - 1334061 875 ## COG4585 Signal transduction histidine kinase 1426 587 Op 3 . + CDS 1334058 - 1334324 121 ## COG4585 Signal transduction histidine kinase 1427 587 Op 4 . + CDS 1334317 - 1334472 134 ## gi|238855879|ref|ZP_04646168.1| transcriptional regulatory protein DegU 1428 587 Op 5 1/0.185 + CDS 1334493 - 1334987 517 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 1429 587 Op 6 . + CDS 1334989 - 1335897 781 ## COG1653 ABC-type sugar transport system, periplasmic component 1430 587 Op 7 . + CDS 1335957 - 1336259 255 ## gi|238855880|ref|ZP_04646169.1| sugar-binding periplasmic protein + Term 1336268 - 1336299 2.1 - Term 1336255 - 1336286 2.1 1431 588 Op 1 2/0.118 - CDS 1336307 - 1337317 1198 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 1432 588 Op 2 . - CDS 1337389 - 1338654 330 ## PROTEIN SUPPORTED gi|148990506|ref|ZP_01821647.1| ribosomal protein L11 methyltransferase - Prom 1338782 - 1338841 6.6 + Prom 1338623 - 1338682 5.9 1433 589 Op 1 . + CDS 1338898 - 1339686 557 ## LA2_00105 transcriptional regulator, XRE family protein 1434 589 Op 2 . + CDS 1339763 - 1340989 965 ## COG0477 Permeases of the major facilitator superfamily + Prom 1340998 - 1341057 4.5 1435 590 Op 1 . + CDS 1341077 - 1341418 214 ## LAC30SC_10090 hypothetical protein 1436 590 Op 2 . + CDS 1341553 - 1341870 225 ## gi|313472854|ref|ZP_07813342.1| hypothetical protein LBJG_01750 + Term 1341912 - 1341976 9.1 - Term 1341906 - 1341954 11.0 1437 591 Op 1 34/0.000 - CDS 1341969 - 1342715 282 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 1438 591 Op 2 31/0.000 - CDS 1342715 - 1344070 1354 ## COG0765 ABC-type amino acid transport system, permease component 1439 591 Op 3 . - CDS 1344046 - 1344276 276 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 1344327 - 1344386 7.0 - Term 1344427 - 1344465 -0.9 1440 592 Tu 1 . - CDS 1344642 - 1345274 540 ## COG2094 3-methyladenine DNA glycosylase - Prom 1345297 - 1345356 4.2 + Prom 1345238 - 1345297 6.5 1441 593 Tu 1 . + CDS 1345327 - 1345689 378 ## COG3189 Uncharacterized conserved protein + Term 1345836 - 1345873 -0.6 1442 594 Tu 1 . - CDS 1346074 - 1346364 294 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Prom 1346390 - 1346449 5.3 + Prom 1346370 - 1346429 6.5 1443 595 Tu 1 . + CDS 1346451 - 1346927 655 ## LJ0094 hypothetical protein + Term 1346963 - 1347007 8.4 + Prom 1346997 - 1347056 8.7 1444 596 Tu 1 . + CDS 1347210 - 1347422 320 ## gi|238855892|ref|ZP_04646181.1| conserved hypothetical protein + Term 1347502 - 1347558 -0.5 1445 597 Tu 1 . + CDS 1347773 - 1349245 1709 ## COG3409 Putative peptidoglycan-binding domain-containing protein + Term 1349439 - 1349511 2.6 1446 598 Tu 1 . + CDS 1349637 - 1350815 1093 ## COG3328 Transposase and inactivated derivatives - Term 1350690 - 1350731 -0.8 1447 599 Tu 1 . - CDS 1350888 - 1351166 117 ## gi|238855923|ref|ZP_04646211.1| hypothetical protein LACJE0001_1424 - Prom 1351186 - 1351245 2.9 + Prom 1351449 - 1351508 7.6 1448 600 Tu 1 . + CDS 1351579 - 1351827 321 ## gi|313472863|ref|ZP_07813351.1| hypothetical protein LBJG_00378 + Prom 1351919 - 1351978 8.4 1449 601 Op 1 . + CDS 1352147 - 1353832 1955 ## GALLO_0271 transposon related peptidoglycan linked protein (LPXTG motif) + Prom 1353857 - 1353916 3.2 1450 601 Op 2 . + CDS 1353943 - 1354539 604 ## gi|238855922|ref|ZP_04646210.1| lpxtg-motif cell wall anchor domain protein + Term 1354571 - 1354632 1.1 + Prom 1354546 - 1354605 4.3 1451 602 Op 1 . + CDS 1354646 - 1356469 2041 ## gi|238855921|ref|ZP_04646209.1| putative cell wall anchor domain protein 1452 602 Op 2 . + CDS 1356481 - 1356747 178 ## gi|238855920|ref|ZP_04646208.1| sortase, surface protein transpeptidase 1453 602 Op 3 . + CDS 1356708 - 1357148 214 ## LDBND_1256 sortase, surface protein transpeptidase 1454 602 Op 4 . + CDS 1357168 - 1359396 2335 ## CPF_0123 cell wall surface anchor family protein 1455 602 Op 5 . + CDS 1359396 - 1360232 747 ## COG3764 Sortase (surface protein transpeptidase) 1456 602 Op 6 . + CDS 1360213 - 1361229 1057 ## gi|238855917|ref|ZP_04646205.1| hypothetical protein LACJE0001_1418 1457 602 Op 7 . + CDS 1361253 - 1361552 370 ## gi|238855916|ref|ZP_04646204.1| conserved hypothetical protein + Term 1361567 - 1361609 -0.7 1458 602 Op 8 . + CDS 1361641 - 1361916 212 ## gi|238855915|ref|ZP_04646203.1| hypothetical protein LACJE0001_1416 + Term 1362024 - 1362068 11.2 + Prom 1361919 - 1361978 9.0 1459 603 Tu 1 . + CDS 1362101 - 1362376 428 ## gi|238855914|ref|ZP_04646202.1| conserved hypothetical protein + Prom 1362723 - 1362782 2.4 1460 604 Tu 1 . + CDS 1362936 - 1364549 1581 ## gi|238855913|ref|ZP_04646201.1| hypothetical protein LACJE0001_1414 + Prom 1364884 - 1364943 2.8 1461 605 Op 1 . + CDS 1365061 - 1365381 85 ## gi|238855912|ref|ZP_04646200.1| conjugation protein, trag/trad family 1462 605 Op 2 . + CDS 1365381 - 1367444 1453 ## COG3505 Type IV secretory pathway, VirD4 components 1463 605 Op 3 . + CDS 1367423 - 1367629 187 ## gi|238855911|ref|ZP_04646199.1| conserved hypothetical protein + Term 1367630 - 1367662 1.4 1464 605 Op 4 . + CDS 1367677 - 1370802 3158 ## BACI_pCIXO200140 hypothetical protein 1465 605 Op 5 . + CDS 1370805 - 1371128 351 ## gi|238855909|ref|ZP_04646197.1| conserved hypothetical protein 1466 605 Op 6 . + CDS 1371109 - 1371708 441 ## pBT9727_0009 hypothetical protein 1467 605 Op 7 . + CDS 1371742 - 1373769 1609 ## COG3451 Type IV secretory pathway, VirB4 components 1468 605 Op 8 . + CDS 1373769 - 1375073 1188 ## PEPE_0799 Enterolysin A. Metallo peptidase. MEROPS family M23B 1469 605 Op 9 . + CDS 1375073 - 1375693 559 ## gi|238855905|ref|ZP_04646193.1| hypothetical protein LACJE0001_1406 1470 605 Op 10 . + CDS 1375693 - 1376337 608 ## gi|238855904|ref|ZP_04646192.1| hypothetical protein LACJE0001_1405 1471 605 Op 11 . + CDS 1376385 - 1376606 92 ## gi|238855903|ref|ZP_04646191.1| conserved hypothetical protein + Prom 1376881 - 1376940 7.8 1472 606 Op 1 . + CDS 1377037 - 1377270 289 ## gi|238855901|ref|ZP_04646189.1| hypothetical protein LACJE0001_1402 + Prom 1377288 - 1377347 2.6 1473 606 Op 2 . + CDS 1377378 - 1377914 558 ## gi|238855901|ref|ZP_04646189.1| hypothetical protein LACJE0001_1402 + Term 1377938 - 1377978 5.0 + Prom 1377969 - 1378028 3.2 1474 607 Tu 1 . + CDS 1378162 - 1378356 207 ## gi|238855900|ref|ZP_04646188.1| hypothetical protein LACJE0001_1401 + Prom 1378505 - 1378564 5.8 1475 608 Op 1 . + CDS 1378689 - 1378943 255 ## gi|238855899|ref|ZP_04646187.1| hypothetical protein LACJE0001_1400 1476 608 Op 2 . + CDS 1378921 - 1379304 506 ## gi|238855898|ref|ZP_04646186.1| hypothetical protein LACJE0001_1399 1477 608 Op 3 . + CDS 1379297 - 1379584 164 ## gi|238855897|ref|ZP_04646185.1| hypothetical protein LACJE0001_1398 1478 608 Op 4 . + CDS 1379666 - 1380262 444 ## pBT9727_0080 hypothetical protein 1479 608 Op 5 . + CDS 1380277 - 1380930 184 ## pBT9727_0080 hypothetical protein 1480 608 Op 6 . + CDS 1381008 - 1381274 270 ## gi|238855896|ref|ZP_04646184.1| conserved hypothetical protein + Term 1381318 - 1381363 10.1 1481 609 Tu 1 . - CDS 1381306 - 1382700 1366 ## COG2801 Transposase and inactivated derivatives - Prom 1382784 - 1382843 4.0 + Prom 1382614 - 1382673 6.3 1482 610 Tu 1 . + CDS 1382794 - 1383126 197 ## gi|313472893|ref|ZP_07813381.1| hypothetical protein LBJG_00350 + Term 1383136 - 1383181 11.6 1483 611 Tu 1 . - CDS 1383661 - 1384839 1093 ## COG3328 Transposase and inactivated derivatives - Prom 1384873 - 1384932 6.8 + Prom 1385291 - 1385350 4.3 1484 612 Tu 1 . + CDS 1385383 - 1385799 214 ## gi|238855330|ref|ZP_04645643.1| conserved hypothetical protein + Term 1385856 - 1385894 6.2 + Prom 1385823 - 1385882 11.4 1485 613 Op 1 . + CDS 1385906 - 1386937 951 ## COG0270 Site-specific DNA methylase 1486 613 Op 2 . + CDS 1386930 - 1387733 495 ## gi|313472897|ref|ZP_07813385.1| hypothetical protein LBJG_01762 + Prom 1387744 - 1387803 2.5 1487 614 Op 1 . + CDS 1387840 - 1388715 783 ## gi|313472898|ref|ZP_07813386.1| putative ATPase AAA-2 1488 614 Op 2 . + CDS 1388667 - 1388975 202 ## gi|238855332|ref|ZP_04645645.1| hypothetical protein LACJE0001_1431 + Prom 1388998 - 1389057 8.7 1489 615 Tu 1 . + CDS 1389098 - 1390837 1773 ## COG1621 Beta-fructosidases (levanase/invertase) + Term 1390840 - 1390884 5.1 + Prom 1390951 - 1391010 5.4 1490 616 Op 1 . + CDS 1391039 - 1391200 198 ## gi|238855334|ref|ZP_04645647.1| leucyl aminopeptidase 1491 616 Op 2 . + CDS 1391224 - 1391496 277 ## gi|313472902|ref|ZP_07813390.1| conserved hypothetical protein + Prom 1391541 - 1391600 2.2 1492 617 Tu 1 . + CDS 1391706 - 1392014 124 ## gi|238855335|ref|ZP_04645648.1| conserved hypothetical protein + Prom 1392109 - 1392168 5.6 1493 618 Op 1 . + CDS 1392283 - 1393695 1229 ## LSL_1826 hypothetical protein 1494 618 Op 2 . + CDS 1393709 - 1394194 450 ## gi|238855337|ref|ZP_04645650.1| hypothetical protein LACJE0001_1436 1495 618 Op 3 . + CDS 1394210 - 1395268 831 ## pBT9727_0074 hypothetical protein 1496 618 Op 4 . + CDS 1395310 - 1395759 371 ## gi|238855339|ref|ZP_04645652.1| hypothetical protein LACJE0001_1438 + Term 1395779 - 1395814 5.3 1497 619 Op 1 . + CDS 1395828 - 1396073 214 ## pREC1_0024 type I DNA topoisomerase (EC:5.99.1.2) 1498 619 Op 2 1/0.185 + CDS 1396055 - 1397014 826 ## COG0550 Topoisomerase IA 1499 619 Op 3 1/0.185 + CDS 1397017 - 1397529 387 ## COG0550 Topoisomerase IA 1500 619 Op 4 . + CDS 1397529 - 1398365 754 ## COG0550 Topoisomerase IA + Term 1398465 - 1398509 -0.6 1501 620 Op 1 . - CDS 1399401 - 1399568 155 ## gi|238855341|ref|ZP_04645654.1| RelB antitoxin 1502 620 Op 2 . - CDS 1399561 - 1399731 241 ## gi|238855342|ref|ZP_04645655.1| RelB antitoxin - Prom 1399765 - 1399824 2.1 1503 621 Op 1 . - CDS 1399862 - 1400107 172 ## gi|313472908|ref|ZP_07813396.1| hypothetical protein LBJG_00336 1504 621 Op 2 . - CDS 1400097 - 1400396 357 ## gi|238855344|ref|ZP_04645657.1| conserved hypothetical protein - Prom 1400431 - 1400490 5.4 1505 622 Tu 1 . - CDS 1400806 - 1401036 295 ## gi|313472911|ref|ZP_07813399.1| conserved hypothetical protein - Prom 1401063 - 1401122 3.7 1506 623 Op 1 . - CDS 1401181 - 1401366 150 ## gi|238855346|ref|ZP_04645659.1| hypothetical cytosolic protein 1507 623 Op 2 . - CDS 1401375 - 1401641 377 ## gi|238855347|ref|ZP_04645660.1| SpoVT / AbrB like domain protein - Prom 1401885 - 1401944 7.2 - Term 1401769 - 1401811 3.1 1508 624 Tu 1 . - CDS 1401998 - 1402816 718 ## pSF118-20_04 hypothetical protein - Prom 1402840 - 1402899 5.7 - Term 1402948 - 1402996 6.1 1509 625 Op 1 . - CDS 1403020 - 1403865 599 ## COG3177 Uncharacterized conserved protein - Prom 1403885 - 1403944 2.2 1510 625 Op 2 . - CDS 1403946 - 1404101 180 ## gi|238855349|ref|ZP_04645662.1| Fic protein 1511 625 Op 3 . - CDS 1404174 - 1404863 424 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 1404922 - 1404981 5.1 - Term 1404979 - 1405024 10.0 1512 626 Tu 1 . - CDS 1405027 - 1405380 239 ## lhv_1657 hypothetical protein - Prom 1405584 - 1405643 8.2 - Term 1405694 - 1405737 3.0 1513 627 Tu 1 . - CDS 1405870 - 1407048 1093 ## COG3328 Transposase and inactivated derivatives + Prom 1407578 - 1407637 6.3 1514 628 Op 1 . + CDS 1407664 - 1407894 167 ## LCRIS_00140 hypothetical protein 1515 628 Op 2 . + CDS 1407935 - 1408297 352 ## LCRIS_00166 transcriptional modulator of maze/toxin, mazf 1516 629 Tu 1 . - CDS 1408397 - 1409095 282 ## gi|282932224|ref|ZP_06337670.1| conserved hypothetical protein - Prom 1409162 - 1409221 9.1 - Term 1409263 - 1409300 4.8 1517 630 Tu 1 . - CDS 1409331 - 1409906 -25 ## gi|238854553|ref|ZP_04644890.1| hypothetical protein LACJE0001_0023 - Prom 1410018 - 1410077 8.4 + Prom 1410600 - 1410659 7.4 1518 631 Op 1 . + CDS 1410745 - 1411005 337 ## gi|238854552|ref|ZP_04644889.1| putative DNA-damage-inducible protein J + Prom 1411133 - 1411192 5.2 1519 631 Op 2 . + CDS 1411291 - 1411458 136 ## gi|313472926|ref|ZP_07813414.1| conserved hypothetical protein + Term 1411686 - 1411745 6.8 + Prom 1411914 - 1411973 8.2 1520 632 Tu 1 . + CDS 1412107 - 1412562 464 ## COG3600 Uncharacterized phage-associated protein + Prom 1412635 - 1412694 9.1 1521 633 Tu 1 . + CDS 1412814 - 1412999 184 ## LA2_01010 hypothetical protein + Term 1413004 - 1413037 2.2 + Prom 1413330 - 1413389 4.5 1522 634 Tu 1 . + CDS 1413510 - 1414730 820 ## Hfelis_08960 N-6 DNA methylase + Prom 1414735 - 1414794 3.4 1523 635 Tu 1 . + CDS 1414850 - 1415218 204 ## Hfelis_08960 N-6 DNA methylase + Prom 1415225 - 1415284 4.1 1524 636 Tu 1 . + CDS 1415365 - 1415871 160 ## Hfelis_08960 N-6 DNA methylase + Term 1416121 - 1416169 1.1 + Prom 1416244 - 1416303 9.4 1525 637 Op 1 . + CDS 1416327 - 1416509 164 ## gi|313472931|ref|ZP_07813419.1| toxin-antitoxin system, toxin component, HicA family 1526 637 Op 2 . + CDS 1416545 - 1416940 348 ## LCRIS_01740 hypothetical protein + Term 1416977 - 1417011 6.2 - Term 1417476 - 1417519 -0.9 1527 638 Op 1 . - CDS 1417522 - 1418376 810 ## COG3177 Uncharacterized conserved protein 1528 638 Op 2 . - CDS 1418366 - 1418803 375 ## gi|238854543|ref|ZP_04644880.1| helix-turn-helix domain protein 1529 638 Op 3 . - CDS 1418878 - 1419006 58 ## gi|238854543|ref|ZP_04644880.1| helix-turn-helix domain protein - Prom 1419030 - 1419089 8.8 + Prom 1418992 - 1419051 7.5 1530 639 Tu 1 . + CDS 1419167 - 1419598 357 ## gi|238854542|ref|ZP_04644879.1| hypothetical protein LACJE0001_0012 + Prom 1419656 - 1419715 6.3 1531 640 Tu 1 . + CDS 1419889 - 1420182 70 ## gi|238854541|ref|ZP_04644878.1| conserved hypothetical protein + Term 1420244 - 1420284 3.5 + Prom 1420604 - 1420663 4.9 1532 641 Tu 1 . + CDS 1420741 - 1421139 158 ## LDBND_0947 chromosome partitioning ATPase 1533 642 Tu 1 . + CDS 1421272 - 1421553 368 ## gi|238852897|ref|ZP_04643300.1| conserved hypothetical protein + Term 1421573 - 1421604 1.1 1534 643 Op 1 . + CDS 1422216 - 1422392 150 ## gi|238854538|ref|ZP_04644875.1| hypothetical protein LACJE0001_0008 1535 643 Op 2 . + CDS 1422392 - 1423129 417 ## gi|313472942|ref|ZP_07813430.1| putative SAM (and some other nucleotide) binding motif:N-6 Adenine-specific DNA methylase + Prom 1423134 - 1423193 4.4 1536 644 Tu 1 . + CDS 1423296 - 1423619 237 ## gi|238854537|ref|ZP_04644874.1| RepB + Term 1423705 - 1423746 7.0 - Term 1423691 - 1423732 7.0 1537 645 Tu 1 . - CDS 1423739 - 1424011 148 ## LSL_2159 hypothetical protein - Prom 1424107 - 1424166 5.2 - Term 1424117 - 1424167 1.2 1538 646 Tu 1 . - CDS 1424314 - 1424520 293 ## gi|238852899|ref|ZP_04643302.1| conserved hypothetical protein - Prom 1424560 - 1424619 6.5 + Prom 1424618 - 1424677 10.7 1539 647 Tu 1 . + CDS 1424822 - 1425376 504 ## COG2452 Predicted site-specific integrase-resolvase + Prom 1425711 - 1425770 7.3 1540 648 Tu 1 . + CDS 1425815 - 1426084 163 ## LBA1634 surface protein + Prom 1426093 - 1426152 5.0 1541 649 Op 1 . + CDS 1426378 - 1427742 1306 ## LBA1634 surface protein 1542 649 Op 2 . + CDS 1427640 - 1428785 1341 ## LAR_0090 hypothetical protein 1543 649 Op 3 . + CDS 1428806 - 1431097 2482 ## LJ0621 hypothetical protein + Prom 1431843 - 1431902 80.4 1544 650 Op 1 . + CDS 1432028 - 1432540 221 ## LJ0621 hypothetical protein 1545 650 Op 2 . + CDS 1432470 - 1434827 2581 ## FI9785_1482 putative mucus binding protein + Term 1434849 - 1434900 9.6 + Prom 1435314 - 1435373 3.0 1546 651 Tu 1 . + CDS 1435481 - 1436290 774 ## COG3328 Transposase and inactivated derivatives + Term 1436364 - 1436410 -0.0 - Term 1436426 - 1436475 9.6 1547 652 Tu 1 . - CDS 1436484 - 1436867 280 ## gi|238855477|ref|ZP_04645786.1| putative prophage repressor - Prom 1437045 - 1437104 5.6 1548 653 Tu 1 . - CDS 1437293 - 1438213 853 ## COG3328 Transposase and inactivated derivatives - Prom 1438395 - 1438454 12.3 - Term 1438765 - 1438800 6.0 1549 654 Tu 1 . - CDS 1438869 - 1440326 1306 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Prom 1440361 - 1440420 8.8 1550 655 Tu 1 . - CDS 1440757 - 1441326 320 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Prom 1441352 - 1441411 4.7 + Prom 1441108 - 1441167 8.9 1551 656 Op 1 . + CDS 1441401 - 1441571 153 ## COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein 1552 656 Op 2 . + CDS 1441568 - 1442164 273 ## COG0328 Ribonuclease HI 1553 656 Op 3 . + CDS 1442186 - 1442950 659 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance + Term 1442956 - 1443003 10.4 - Term 1442951 - 1442983 -0.9 1554 657 Tu 1 . - CDS 1443005 - 1443964 1015 ## COG4086 Predicted secreted protein - Prom 1444097 - 1444156 5.0 + Prom 1444050 - 1444109 6.5 1555 658 Op 1 1/0.185 + CDS 1444130 - 1444942 619 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 1556 658 Op 2 . + CDS 1444961 - 1445497 637 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 1445614 - 1445658 11.1 - Term 1445607 - 1445637 2.0 1557 659 Tu 1 . - CDS 1445642 - 1446016 518 ## COG3759 Predicted membrane protein - Prom 1446038 - 1446097 8.7 + Prom 1446068 - 1446127 6.3 1558 660 Tu 1 . + CDS 1446156 - 1447142 1258 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 1447168 - 1447213 7.4 + Prom 1447195 - 1447254 8.4 1559 661 Op 1 . + CDS 1447299 - 1447967 470 ## LDBND_0153 transcriptional regulator (TetR family) 1560 661 Op 2 . + CDS 1447978 - 1448481 492 ## LAC30SC_00615 hypothetical protein 1561 661 Op 3 . + CDS 1448487 - 1448810 303 ## lhv_0139 hypothetical protein + Term 1448831 - 1448880 8.5 - Term 1448826 - 1448859 3.1 1562 662 Tu 1 . - CDS 1448887 - 1450386 1573 ## LJ0107 hypothetical protein - Prom 1450455 - 1450514 9.1 + Prom 1450400 - 1450459 11.7 1563 663 Op 1 . + CDS 1450591 - 1451676 1269 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 1564 663 Op 2 . + CDS 1451688 - 1452407 937 ## LAC30SC_00640 hypothetical protein + Term 1452419 - 1452458 7.0 1565 664 Op 1 3/0.062 + CDS 1452482 - 1453582 1021 ## COG5438 Predicted multitransmembrane protein 1566 664 Op 2 . + CDS 1453584 - 1454336 722 ## COG5438 Predicted multitransmembrane protein 1567 665 Tu 1 . - CDS 1454356 - 1457364 2878 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases - Prom 1457391 - 1457450 7.9 + Prom 1457233 - 1457292 7.2 1568 666 Op 1 . + CDS 1457509 - 1458669 1329 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 1569 666 Op 2 7/0.005 + CDS 1458669 - 1459502 832 ## COG3711 Transcriptional antiterminator + Prom 1459511 - 1459570 5.4 1570 667 Op 1 8/0.005 + CDS 1459701 - 1461521 2047 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Prom 1461552 - 1461611 2.3 1571 667 Op 2 . + CDS 1461710 - 1463164 1585 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 1463184 - 1463230 3.5 1572 668 Op 1 . - CDS 1463615 - 1464532 521 ## COG2207 AraC-type DNA-binding domain-containing proteins 1573 668 Op 2 . - CDS 1464568 - 1464774 316 ## LDBND_1122 hydrolase, alpha/beta domain protein 1574 668 Op 3 . - CDS 1464771 - 1465451 929 ## COG0657 Esterase/lipase - Prom 1465653 - 1465712 6.1 + Prom 1465450 - 1465509 11.9 1575 669 Op 1 2/0.118 + CDS 1465654 - 1466853 965 ## COG0477 Permeases of the major facilitator superfamily 1576 669 Op 2 2/0.118 + CDS 1466879 - 1467790 1039 ## COG1940 Transcriptional regulator/sugar kinase + Prom 1467838 - 1467897 5.1 1577 670 Op 1 21/0.000 + CDS 1468045 - 1468404 276 ## COG0477 Permeases of the major facilitator superfamily 1578 670 Op 2 1/0.185 + CDS 1468416 - 1469264 619 ## COG0477 Permeases of the major facilitator superfamily 1579 670 Op 3 . + CDS 1469280 - 1470038 646 ## COG1073 Hydrolases of the alpha/beta superfamily + Prom 1470101 - 1470160 6.3 1580 671 Op 1 2/0.118 + CDS 1470277 - 1471620 1808 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases + Term 1471655 - 1471686 3.1 1581 671 Op 2 3/0.062 + CDS 1471697 - 1473568 2101 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Prom 1473611 - 1473670 3.3 1582 672 Op 1 . + CDS 1473690 - 1474463 683 ## COG1737 Transcriptional regulators 1583 672 Op 2 . + CDS 1474466 - 1474957 267 ## LAC30SC_03055 hypothetical protein 1584 672 Op 3 . + CDS 1474968 - 1475450 675 ## COG2190 Phosphotransferase system IIA components + Term 1475467 - 1475512 10.9 + Prom 1475564 - 1475623 5.6 1585 673 Tu 1 . + CDS 1475714 - 1476877 897 ## COG0477 Permeases of the major facilitator superfamily + Term 1476878 - 1476931 14.4 - Term 1476866 - 1476919 14.4 1586 674 Tu 1 . - CDS 1476920 - 1477795 1094 ## COG1940 Transcriptional regulator/sugar kinase - Prom 1477917 - 1477976 8.0 + Prom 1477987 - 1478046 7.2 1587 675 Tu 1 . + CDS 1478076 - 1479785 1738 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 1479790 - 1479839 11.3 - Term 1479778 - 1479827 6.4 1588 676 Tu 1 . - CDS 1479832 - 1480752 199 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 - Prom 1480774 - 1480833 10.9 + Prom 1480796 - 1480855 5.9 1589 677 Op 1 4/0.036 + CDS 1480903 - 1481826 1197 ## COG0169 Shikimate 5-dehydrogenase 1590 677 Op 2 21/0.000 + CDS 1481925 - 1482134 186 ## COG0477 Permeases of the major facilitator superfamily 1591 677 Op 3 . + CDS 1482182 - 1483042 708 ## COG0477 Permeases of the major facilitator superfamily 1592 677 Op 4 . + CDS 1483059 - 1483253 195 ## MPTP_1836 3-dehydroquinate dehydratase I (EC:4.2.1.10) 1593 677 Op 5 . + CDS 1483274 - 1483816 608 ## COG0710 3-dehydroquinate dehydratase + Term 1483831 - 1483865 6.2 - Term 1483559 - 1483595 1.2 1594 678 Op 1 9/0.005 - CDS 1483834 - 1484331 328 ## COG0583 Transcriptional regulator 1595 678 Op 2 3/0.062 - CDS 1484328 - 1484741 507 ## COG0583 Transcriptional regulator - Prom 1484781 - 1484840 8.0 - Term 1484843 - 1484887 7.2 1596 679 Tu 1 . - CDS 1484900 - 1486129 1132 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 1486294 - 1486353 7.1 + Prom 1486149 - 1486208 9.3 1597 680 Tu 1 . + CDS 1486241 - 1488778 3218 ## COG0308 Aminopeptidase N + Term 1488782 - 1488811 2.1 - Term 1488770 - 1488799 2.1 1598 681 Tu 1 . - CDS 1488809 - 1489471 447 ## lhv_1884 hypothetical protein - Prom 1489559 - 1489618 8.5 + Prom 1489453 - 1489512 6.4 1599 682 Op 1 . + CDS 1489574 - 1489948 359 ## LBA1843 hypothetical protein 1600 682 Op 2 . + CDS 1489882 - 1490157 127 ## COG3022 Uncharacterized protein conserved in bacteria 1601 682 Op 3 . + CDS 1490154 - 1490333 125 ## lhv_1883 hypothetical protein 1602 683 Tu 1 . - CDS 1490705 - 1491070 551 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 1491092 - 1491151 5.0 + Prom 1491043 - 1491102 4.7 1603 684 Tu 1 . + CDS 1491147 - 1491746 609 ## COG0406 Fructose-2,6-bisphosphatase + Term 1491756 - 1491783 0.1 + Prom 1491766 - 1491825 7.3 1604 685 Op 1 9/0.005 + CDS 1491858 - 1492928 1114 ## COG0277 FAD/FMN-containing dehydrogenases 1605 685 Op 2 . + CDS 1492883 - 1493263 363 ## COG0277 FAD/FMN-containing dehydrogenases + Term 1493265 - 1493302 2.4 + Prom 1493278 - 1493337 10.5 1606 686 Tu 1 . + CDS 1493378 - 1493878 425 ## COG1309 Transcriptional regulator + Prom 1493945 - 1494004 5.2 1607 687 Op 1 10/0.000 + CDS 1494109 - 1494534 288 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 1608 687 Op 2 36/0.000 + CDS 1494605 - 1494958 402 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 1609 687 Op 3 . + CDS 1494959 - 1495525 224 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Term 1495633 - 1495677 8.2 - Term 1495621 - 1495666 6.3 1610 688 Tu 1 . - CDS 1495676 - 1497088 1595 ## COG4690 Dipeptidase + Prom 1497071 - 1497130 9.3 1611 689 Tu 1 . + CDS 1497170 - 1497337 104 ## gi|313472991|ref|ZP_07813478.1| conserved hypothetical protein + Prom 1497339 - 1497398 8.0 1612 690 Tu 1 . + CDS 1497595 - 1498047 572 ## lhv_1873 transcriptional regulator + Prom 1498059 - 1498118 8.8 1613 691 Op 1 1/0.185 + CDS 1498146 - 1498682 577 ## COG0431 Predicted flavoprotein 1614 691 Op 2 . + CDS 1498695 - 1499243 752 ## COG0431 Predicted flavoprotein + Term 1499254 - 1499307 9.0 + Prom 1499272 - 1499331 7.2 1615 692 Tu 1 . + CDS 1499356 - 1500318 719 ## COG3589 Uncharacterized conserved protein + Term 1500341 - 1500395 -0.3 + Prom 1500378 - 1500437 8.6 1616 693 Op 1 . + CDS 1500498 - 1500824 191 ## COG2365 Protein tyrosine/serine phosphatase 1617 693 Op 2 . + CDS 1500860 - 1501279 454 ## COG2365 Protein tyrosine/serine phosphatase 1618 693 Op 3 . + CDS 1501296 - 1502225 950 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis + Term 1502229 - 1502262 3.1 - Term 1502211 - 1502254 10.5 1619 694 Op 1 . - CDS 1502255 - 1502518 187 ## lhv_1868 hypothetical protein 1620 694 Op 2 . - CDS 1502440 - 1502784 230 ## LJ0553 hypothetical protein + Prom 1502770 - 1502829 8.7 1621 695 Op 1 4/0.036 + CDS 1502962 - 1503756 671 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 1622 695 Op 2 25/0.000 + CDS 1503696 - 1504538 773 ## COG1475 Predicted transcriptional regulators 1623 695 Op 3 25/0.000 + CDS 1504551 - 1505285 530 ## COG1192 ATPases involved in chromosome partitioning 1624 695 Op 4 1/0.185 + CDS 1505307 - 1506215 1032 ## COG1475 Predicted transcriptional regulators 1625 695 Op 5 4/0.036 + CDS 1506208 - 1506468 301 ## COG4481 Uncharacterized protein conserved in bacteria 1626 695 Op 6 . + CDS 1506495 - 1507100 790 ## COG0012 Predicted GTPase, probable translation factor 1627 695 Op 7 . + CDS 1507130 - 1507594 633 ## COG0012 Predicted GTPase, probable translation factor 1628 695 Op 8 . + CDS 1507605 - 1508330 695 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria + Term 1508410 - 1508451 3.8 + Prom 1508332 - 1508391 9.6 1629 696 Op 1 35/0.000 + CDS 1508548 - 1508943 445 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 1630 696 Op 2 . + CDS 1508921 - 1510273 194 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 1631 696 Op 3 . + CDS 1510282 - 1510491 310 ## LDBND_1893 ABC transporter, ATP-binding/permease protein 1632 696 Op 4 . + CDS 1510562 - 1512103 1650 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 1512116 - 1512159 6.2 + Prom 1512112 - 1512171 5.5 1633 697 Op 1 40/0.000 + CDS 1512208 - 1512894 889 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 1634 697 Op 2 10/0.000 + CDS 1512897 - 1513565 501 ## COG0642 Signal transduction histidine kinase 1635 697 Op 3 . + CDS 1513592 - 1514059 459 ## COG0642 Signal transduction histidine kinase 1636 697 Op 4 . + CDS 1514094 - 1515644 1573 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 1637 697 Op 5 . + CDS 1515665 - 1516417 787 ## COG1794 Aspartate racemase + Term 1516427 - 1516470 7.1 + Prom 1516453 - 1516512 2.8 1638 698 Op 1 . + CDS 1516557 - 1516802 215 ## COG1349 Transcriptional regulators of sugar metabolism 1639 698 Op 2 10/0.000 + CDS 1516877 - 1517290 284 ## COG1349 Transcriptional regulators of sugar metabolism 1640 698 Op 3 19/0.000 + CDS 1517311 - 1518225 1255 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 1641 698 Op 4 . + CDS 1518250 - 1520208 2423 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 1520232 - 1520267 4.3 + Prom 1520217 - 1520276 6.1 1642 699 Op 1 . + CDS 1520296 - 1521084 888 ## COG0561 Predicted hydrolases of the HAD superfamily 1643 699 Op 2 42/0.000 + CDS 1521150 - 1521806 221 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 1644 699 Op 3 . + CDS 1521806 - 1522597 810 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components + Term 1522603 - 1522640 5.7 + Prom 1522621 - 1522680 9.1 1645 700 Op 1 3/0.062 + CDS 1522708 - 1523814 1034 ## COG1620 L-lactate permease 1646 700 Op 2 3/0.062 + CDS 1523862 - 1524242 306 ## COG1620 L-lactate permease + Term 1524246 - 1524279 3.1 + Prom 1524258 - 1524317 7.3 1647 701 Tu 1 . + CDS 1524339 - 1525862 973 ## COG1620 L-lactate permease + Term 1526000 - 1526037 -0.0 - Term 1525989 - 1526022 -0.2 1648 702 Op 1 . - CDS 1526076 - 1526276 83 ## COG1164 Oligoendopeptidase F - Prom 1526352 - 1526411 2.5 1649 702 Op 2 . - CDS 1526480 - 1527721 1267 ## COG1164 Oligoendopeptidase F - Prom 1527746 - 1527805 13.2 + Prom 1527765 - 1527824 7.0 1650 703 Tu 1 . + CDS 1527890 - 1529098 1085 ## COG1316 Transcriptional regulator + Term 1529105 - 1529133 2.3 - Term 1529093 - 1529121 2.3 1651 704 Op 1 2/0.118 - CDS 1529149 - 1530216 1404 ## COG2132 Putative multicopper oxidases 1652 704 Op 2 . - CDS 1530276 - 1530713 306 ## COG2132 Putative multicopper oxidases - Prom 1530879 - 1530938 5.1 + Prom 1530650 - 1530709 7.1 1653 705 Op 1 . + CDS 1530951 - 1531448 439 ## LBA1751 hypothetical protein 1654 705 Op 2 . + CDS 1531523 - 1532161 587 ## FI9785_1632 hypothetical protein - Term 1531950 - 1531995 2.1 1655 706 Op 1 . - CDS 1532166 - 1532876 388 ## LCRIS_01774 hypothetical protein 1656 706 Op 2 . - CDS 1532942 - 1533724 464 ## LCRIS_01774 hypothetical protein - Term 1533739 - 1533771 1.7 1657 706 Op 3 . - CDS 1533796 - 1534086 286 ## LJ0595 hypothetical protein - Prom 1534121 - 1534180 9.1 + Prom 1534060 - 1534119 7.0 1658 707 Op 1 . + CDS 1534145 - 1534729 452 ## COG0194 Guanylate kinase + Prom 1534742 - 1534801 9.9 1659 707 Op 2 . + CDS 1534898 - 1536058 1381 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 1536065 - 1536117 14.4 - Term 1536056 - 1536102 8.4 1660 708 Tu 1 . - CDS 1536169 - 1537440 553 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 - Prom 1537645 - 1537704 10.0 + Prom 1537538 - 1537597 4.2 1661 709 Op 1 36/0.000 + CDS 1537619 - 1538368 284 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 1662 709 Op 2 10/0.000 + CDS 1538386 - 1539588 925 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 1663 709 Op 3 . + CDS 1539585 - 1540181 598 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 1664 709 Op 4 . + CDS 1540237 - 1540683 703 ## COG0105 Nucleoside diphosphate kinase + Term 1540694 - 1540740 3.1 - Term 1540681 - 1540726 7.1 1665 710 Op 1 . - CDS 1540731 - 1541381 599 ## COG0406 Fructose-2,6-bisphosphatase 1666 710 Op 2 . - CDS 1541399 - 1542073 662 ## COG5549 Predicted Zn-dependent protease - Prom 1542182 - 1542241 7.6 + Prom 1542357 - 1542416 8.1 1667 711 Op 1 . + CDS 1542472 - 1543431 647 ## COG3973 Superfamily I DNA and RNA helicases 1668 711 Op 2 . + CDS 1543284 - 1544546 1052 ## COG3973 Superfamily I DNA and RNA helicases + Term 1544554 - 1544582 -1.0 + Prom 1544556 - 1544615 7.9 1669 712 Op 1 1/0.185 + CDS 1544709 - 1545251 445 ## COG2357 Uncharacterized protein conserved in bacteria 1670 712 Op 2 2/0.118 + CDS 1545248 - 1545649 350 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 1671 712 Op 3 . + CDS 1545625 - 1545918 132 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 1672 712 Op 4 . + CDS 1545925 - 1546428 359 ## LBUL_0803 signal transduction histidine kinase 1673 712 Op 5 . + CDS 1546467 - 1547174 508 ## COG0642 Signal transduction histidine kinase 1674 712 Op 6 . + CDS 1547246 - 1548160 680 ## COG1072 Panthothenate kinase + Prom 1548199 - 1548258 6.9 1675 713 Tu 1 . + CDS 1548311 - 1548841 734 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 1548859 - 1548900 6.1 - Term 1548847 - 1548886 4.5 1676 714 Tu 1 . - CDS 1548900 - 1549811 1066 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 1550051 - 1550110 7.2 + Prom 1549876 - 1549935 8.6 1677 715 Tu 1 . + CDS 1549962 - 1551542 1658 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 1551566 - 1551603 2.1 + Prom 1551609 - 1551668 14.7 1678 716 Op 1 . + CDS 1551749 - 1552534 960 ## COG2461 Uncharacterized conserved protein 1679 716 Op 2 . + CDS 1552613 - 1553848 938 ## COG3410 Uncharacterized conserved protein + Term 1553864 - 1553905 4.8 + Prom 1553852 - 1553911 3.6 1680 717 Op 1 1/0.185 + CDS 1553941 - 1555206 1335 ## COG2195 Di- and tripeptidases + Prom 1555210 - 1555269 2.0 1681 717 Op 2 . + CDS 1555302 - 1555982 548 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 1682 718 Op 1 . + CDS 1556089 - 1556619 442 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 1683 718 Op 2 . + CDS 1556616 - 1556930 206 ## LAC30SC_08940 DNA polymerase III 1684 718 Op 3 . + CDS 1556939 - 1557664 544 ## LJ0652 hypothetical protein 1685 718 Op 4 . + CDS 1557664 - 1557810 110 ## LDBND_1748 DNA-entry nuclease + Prom 1557812 - 1557871 11.8 1686 719 Op 1 10/0.000 + CDS 1557986 - 1559071 1087 ## COG3839 ABC-type sugar transport systems, ATPase components 1687 719 Op 2 . + CDS 1559071 - 1559937 828 ## COG1175 ABC-type sugar transport systems, permease components 1688 719 Op 3 . + CDS 1559937 - 1560149 148 ## LAC30SC_08915 sugar ABC transporter + Prom 1560181 - 1560240 2.9 1689 720 Op 1 . + CDS 1560278 - 1560760 431 ## COG0395 ABC-type sugar transport system, permease component 1690 720 Op 2 . + CDS 1560744 - 1562027 1255 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 1691 720 Op 3 2/0.118 + CDS 1562077 - 1563384 1791 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 1563400 - 1563443 8.3 + Prom 1563440 - 1563499 5.7 1692 721 Tu 1 . + CDS 1563543 - 1564832 1440 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 1564850 - 1564882 -0.9 + Prom 1564871 - 1564930 4.7 1693 722 Tu 1 . + CDS 1564952 - 1565875 822 ## COG0598 Mg2+ and Co2+ transporters + Term 1565883 - 1565919 3.2 - Term 1565871 - 1565905 5.3 1694 723 Tu 1 . - CDS 1565920 - 1566816 1129 ## COG2971 Predicted N-acetylglucosamine kinase - Prom 1567025 - 1567084 9.5 + Prom 1566807 - 1566866 7.4 1695 724 Op 1 . + CDS 1566967 - 1567443 297 ## gi|238855558|ref|ZP_04645861.1| conserved hypothetical protein 1696 724 Op 2 . + CDS 1567464 - 1567886 335 ## LDBND_1741 beta-lactamase class A + Term 1567887 - 1567919 2.0 + Prom 1567915 - 1567974 4.7 1697 725 Op 1 . + CDS 1567998 - 1568546 487 ## LCRIS_01665 transcriptional regulator 1698 725 Op 2 . + CDS 1568560 - 1568793 234 ## LA2_09215 membrane protein + Prom 1568909 - 1568968 4.8 1699 726 Op 1 1/0.185 + CDS 1568994 - 1569641 420 ## COG2409 Predicted drug exporters of the RND superfamily 1700 726 Op 2 1/0.185 + CDS 1569692 - 1570462 878 ## COG2409 Predicted drug exporters of the RND superfamily 1701 726 Op 3 . + CDS 1570462 - 1571682 1115 ## COG2409 Predicted drug exporters of the RND superfamily + Term 1571692 - 1571732 2.2 + Prom 1571700 - 1571759 7.3 1702 727 Op 1 . + CDS 1571789 - 1572343 476 ## LBA1636 hypothetical protein 1703 727 Op 2 . + CDS 1572349 - 1572759 212 ## lhv_1740 hypothetical protein + Term 1572764 - 1572801 5.7 - Term 1572751 - 1572789 2.1 1704 728 Op 1 4/0.036 - CDS 1572802 - 1573299 477 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 1573358 - 1573417 3.8 1705 728 Op 2 . - CDS 1573431 - 1574183 624 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 1574211 - 1574270 10.8 + Prom 1574226 - 1574285 12.8 1706 729 Tu 1 . + CDS 1574379 - 1574807 425 ## LAC30SC_08850 nucleoside deoxyribosyltransferase - Term 1574802 - 1574836 4.0 1707 730 Op 1 . - CDS 1574842 - 1575693 880 ## LBUL_1752 XRE family transcriptional regulator 1708 730 Op 2 . - CDS 1575695 - 1576306 469 ## COG0657 Esterase/lipase + Prom 1576572 - 1576631 9.8 1709 731 Op 1 2/0.118 + CDS 1576686 - 1577039 248 ## COG0398 Uncharacterized conserved protein 1710 731 Op 2 . + CDS 1576973 - 1577290 119 ## COG0398 Uncharacterized conserved protein 1711 731 Op 3 . + CDS 1577287 - 1577793 358 ## PROTEIN SUPPORTED gi|116630184|ref|YP_815356.1| acetyltransferase + Term 1578002 - 1578043 10.2 + Prom 1578009 - 1578068 7.2 1712 732 Tu 1 . + CDS 1578107 - 1579363 1468 ## COG0172 Seryl-tRNA synthetase + Term 1579374 - 1579421 10.4 + 5S_RRNA 1579987 - 1580049 96.0 # AE015927 [R:2797299..2798807] # 5S ribosomal RNA # Clostridium tetani E88 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. + TRNA 1581741 - 1581814 91.8 # Ile GAT 0 0 + Prom 1583728 - 1583787 80.4 1713 733 Tu 1 . + CDS 1583837 - 1584166 345 ## COG4687 Uncharacterized protein conserved in bacteria + Term 1584173 - 1584206 3.1 - Term 1584233 - 1584289 12.0 1714 734 Tu 1 . - CDS 1584290 - 1584544 311 ## LBUL_1668 gamma-aminobutyrate permease related permease - Prom 1584580 - 1584639 1.9 + 5S_RRNA 1585029 - 1585137 91.0 # AF142677 [R:48033..48709] # 5S ribosomal RNA # Bacillus megaterium # Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus. + 5S_RRNA 1585307 - 1585408 99.0 # EU184020 [D:4881..4998] # 5S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + TRNA 1585434 - 1585509 83.7 # Asn GTT 0 0 + Prom 1585435 - 1585494 79.1 1715 735 Op 1 13/0.000 + CDS 1585639 - 1586634 1207 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 1716 735 Op 2 13/0.000 + CDS 1586649 - 1587452 1068 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 1717 735 Op 3 . + CDS 1587474 - 1587689 166 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 1718 735 Op 4 4/0.036 + CDS 1587785 - 1588387 755 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 1719 735 Op 5 . + CDS 1588389 - 1588754 312 ## COG4687 Uncharacterized protein conserved in bacteria + Term 1588760 - 1588793 3.1 - Term 1588820 - 1588876 12.0 1720 736 Tu 1 . - CDS 1588877 - 1590256 1226 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 1590474 - 1590533 9.6 - TRNA 1590390 - 1590463 67.7 # Arg ACG 0 0 - TRNA 1590525 - 1590597 81.7 # Thr CGT 0 0 + Prom 1590442 - 1590501 7.4 1721 737 Tu 1 . + CDS 1590670 - 1590993 265 ## COG2076 Membrane transporters of cations and cationic drugs + Term 1591061 - 1591114 0.2 + Prom 1591064 - 1591123 7.6 1722 738 Tu 1 . + CDS 1591282 - 1592010 954 ## LA2_02635 agregation promoting protein + Term 1592044 - 1592073 1.4 + Prom 1592036 - 1592095 7.1 1723 739 Op 1 . + CDS 1592126 - 1592323 123 ## COG0406 Fructose-2,6-bisphosphatase 1724 739 Op 2 . + CDS 1592368 - 1592697 366 ## LBA0495 phosphoglycerate mutase + Term 1592714 - 1592754 -0.8 + TRNA 1592794 - 1592865 62.9 # Gln TTG 0 0 + Prom 1592792 - 1592851 76.3 1725 740 Op 1 . + CDS 1592986 - 1594098 978 ## LA2_02770 hypothetical protein 1726 740 Op 2 . + CDS 1594186 - 1594887 692 ## COG2188 Transcriptional regulators + Term 1594890 - 1594921 3.4 - Term 1594878 - 1594909 3.4 1727 741 Tu 1 . - CDS 1594913 - 1595299 401 ## COG0615 Cytidylyltransferase - Prom 1595325 - 1595384 2.7 + Prom 1595250 - 1595309 7.2 1728 742 Op 1 . + CDS 1595425 - 1596102 460 ## FI9785_1516 hypothetical protein 1729 742 Op 2 . + CDS 1596159 - 1596566 280 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC + Prom 1596636 - 1596695 4.4 1730 743 Tu 1 . + CDS 1596720 - 1597178 375 ## LJ1727 hypothetical protein + Prom 1597188 - 1597247 3.8 1731 744 Op 1 . + CDS 1597322 - 1597999 458 ## LCRIS_00523 capsular polysaccharide synthesis protein 1732 744 Op 2 3/0.062 + CDS 1598001 - 1598735 569 ## COG1922 Teichoic acid biosynthesis proteins 1733 744 Op 3 . + CDS 1598735 - 1599823 1022 ## COG0438 Glycosyltransferase 1734 744 Op 4 . + CDS 1599826 - 1600173 155 ## gi|260665375|ref|ZP_05866223.1| conserved hypothetical protein + Term 1600216 - 1600249 -0.4 + Prom 1600187 - 1600246 4.6 1735 745 Tu 1 . + CDS 1600331 - 1601470 646 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 1601600 - 1601659 4.7 1736 746 Op 1 . + CDS 1601781 - 1602479 820 ## COG3774 Mannosyltransferase OCH1 and related enzymes 1737 746 Op 2 . + CDS 1602511 - 1603923 775 ## LBA1284 cell division protein + Prom 1603932 - 1603991 4.1 1738 747 Op 1 . + CDS 1604025 - 1604255 157 ## FI9785_867 hypothetical protein 1739 747 Op 2 . + CDS 1604252 - 1605982 569 ## LGAS_0853 hypothetical protein 1740 747 Op 3 . + CDS 1606020 - 1607177 1412 ## COG1488 Nicotinic acid phosphoribosyltransferase 1741 747 Op 4 5/0.021 + CDS 1607210 - 1607494 243 ## COG1488 Nicotinic acid phosphoribosyltransferase 1742 747 Op 5 . + CDS 1607494 - 1608324 891 ## COG0171 NAD synthase + Term 1608446 - 1608488 8.1 + Prom 1608341 - 1608400 4.9 1743 748 Tu 1 . + CDS 1608644 - 1611136 3080 ## COG0474 Cation transport ATPase + Term 1611142 - 1611185 9.6 + Prom 1611159 - 1611218 5.1 1744 749 Op 1 . + CDS 1611242 - 1612723 1028 ## LSA1579 putative teichoic acid/polysaccharide export protein + Term 1612727 - 1612757 2.0 1745 749 Op 2 . + CDS 1612771 - 1613214 263 ## COG3091 Uncharacterized protein conserved in bacteria + Term 1613355 - 1613388 2.2 + TRNA 1613261 - 1613346 54.5 # Leu AAG 0 0 + Prom 1613796 - 1613855 6.1 1746 750 Op 1 . + CDS 1614059 - 1614268 207 ## LCRIS_00526 N-acetylmuramidase 1747 750 Op 2 . + CDS 1614307 - 1614702 264 ## COG1705 Muramidase (flagellum-specific) + Term 1614719 - 1614754 5.1 + Prom 1614705 - 1614764 7.5 1748 751 Op 1 5/0.021 + CDS 1614793 - 1617057 2527 ## COG0210 Superfamily I DNA and RNA helicases 1749 751 Op 2 . + CDS 1617092 - 1617409 325 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) + Prom 1617412 - 1617471 2.7 1750 752 Op 1 . + CDS 1617592 - 1617750 67 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 1751 752 Op 2 4/0.036 + CDS 1617819 - 1619099 1245 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 1752 752 Op 3 1/0.185 + CDS 1619108 - 1620256 1114 ## COG4851 Protein involved in sex pheromone biosynthesis 1753 752 Op 4 31/0.000 + CDS 1620269 - 1620571 304 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 1754 752 Op 5 21/0.000 + CDS 1620571 - 1622010 383 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 1755 752 Op 6 2/0.118 + CDS 1622014 - 1623444 1924 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 1756 752 Op 7 . + CDS 1623479 - 1624090 659 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 1757 752 Op 8 . + CDS 1624087 - 1624392 223 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 1624405 - 1624446 8.0 - Term 1624384 - 1624442 16.4 1758 753 Op 1 . - CDS 1624449 - 1625714 1425 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance 1759 753 Op 2 . - CDS 1625725 - 1627815 2100 ## COG1982 Arginine/lysine/ornithine decarboxylases - Prom 1627845 - 1627904 11.4 + Prom 1627941 - 1628000 4.0 1760 754 Tu 1 . + CDS 1628021 - 1629481 1491 ## COG0531 Amino acid transporters + Term 1629511 - 1629567 7.2 + Prom 1629507 - 1629566 12.0 1761 755 Tu 1 . + CDS 1629619 - 1630458 657 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 1630470 - 1630522 5.9 - Term 1630465 - 1630503 6.2 1762 756 Op 1 5/0.021 - CDS 1630524 - 1630790 293 ## COG0670 Integral membrane protein, interacts with FtsH 1763 756 Op 2 . - CDS 1630820 - 1631230 513 ## COG0670 Integral membrane protein, interacts with FtsH - Prom 1631284 - 1631343 5.7 - Term 1631331 - 1631377 7.2 1764 757 Op 1 . - CDS 1631388 - 1632611 1032 ## COG1757 Na+/H+ antiporter 1765 757 Op 2 . - CDS 1632560 - 1632754 167 ## - Prom 1632977 - 1633036 10.0 + Prom 1633015 - 1633074 6.0 1766 758 Tu 1 . + CDS 1633110 - 1634453 1589 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Term 1634438 - 1634482 9.1 1767 759 Tu 1 . - CDS 1634508 - 1634747 109 ## gi|260665350|ref|ZP_05866198.1| predicted protein - Prom 1634951 - 1635010 9.1 + Prom 1634598 - 1634657 8.5 1768 760 Tu 1 . + CDS 1634769 - 1635047 266 ## gi|238855410|ref|ZP_04645721.1| hypothetical protein LACJE0001_0452 + Prom 1635128 - 1635187 5.1 1769 761 Tu 1 . + CDS 1635378 - 1635734 232 ## PROTEIN SUPPORTED gi|157165407|ref|YP_001467497.1| 30S ribosomal protein S8 + Term 1635774 - 1635824 10.2 - Term 1635755 - 1635818 18.1 1770 762 Op 1 . - CDS 1635835 - 1638333 1067 ## COG4485 Predicted membrane protein - Prom 1638452 - 1638511 6.5 - Term 1638495 - 1638543 9.4 1771 762 Op 2 . - CDS 1638545 - 1640455 1984 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 1640685 - 1640744 6.0 + Prom 1640465 - 1640524 7.4 1772 763 Tu 1 . + CDS 1640629 - 1641303 664 ## COG2344 AT-rich DNA-binding protein + Term 1641346 - 1641387 6.6 - Term 1641246 - 1641300 1.5 1773 764 Op 1 . - CDS 1641349 - 1641645 232 ## LDBND_0944 transposase 1774 764 Op 2 . - CDS 1641609 - 1642343 458 ## COG3464 Transposase and inactivated derivatives 1775 764 Op 3 . - CDS 1642354 - 1642701 98 ## LDBND_0944 transposase - Prom 1642910 - 1642969 6.1 + Prom 1643226 - 1643285 7.1 1776 765 Tu 1 . + CDS 1643324 - 1644949 1601 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 1644972 - 1645011 5.1 + Prom 1644956 - 1645015 6.7 1777 766 Tu 1 . + CDS 1645072 - 1645896 667 ## LCRIS_00802 hypothetical protein + Term 1645974 - 1646015 8.1 + Prom 1645999 - 1646058 5.8 1778 767 Op 1 . + CDS 1646078 - 1646323 306 ## LBA1863 transcriptional regulator 1779 767 Op 2 . + CDS 1646323 - 1646913 285 ## LJ1297 hypothetical protein + Prom 1646916 - 1646975 11.5 1780 768 Op 1 35/0.000 + CDS 1647005 - 1647955 726 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 1781 768 Op 2 . + CDS 1647898 - 1648569 368 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 1648594 - 1648633 -0.8 - Term 1648576 - 1648623 7.2 1782 769 Tu 1 . - CDS 1648639 - 1649310 716 ## gi|238855601|ref|ZP_04645902.1| hypothetical protein LACJE0001_1354 - Prom 1649337 - 1649396 6.5 + Prom 1649254 - 1649313 6.6 1783 770 Op 1 6/0.005 + CDS 1649447 - 1651036 1119 ## COG1479 Uncharacterized conserved protein 1784 770 Op 2 . + CDS 1651033 - 1651527 267 ## COG1479 Uncharacterized conserved protein 1785 770 Op 3 27/0.000 + CDS 1651582 - 1653021 1742 ## COG0286 Type I restriction-modification system methyltransferase subunit 1786 770 Op 4 11/0.000 + CDS 1653093 - 1654211 632 ## COG0732 Restriction endonuclease S subunits 1787 770 Op 5 3/0.062 + CDS 1654264 - 1656939 2190 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 1788 770 Op 6 . + CDS 1656936 - 1657373 450 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases + Term 1657461 - 1657507 -0.6 + Prom 1657539 - 1657598 9.2 1789 771 Op 1 6/0.005 + CDS 1657629 - 1660211 2815 ## COG0249 Mismatch repair ATPase (MutS family) 1790 771 Op 2 1/0.185 + CDS 1660211 - 1662076 1762 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 1791 771 Op 3 29/0.000 + CDS 1662079 - 1662666 788 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 1792 771 Op 4 1/0.185 + CDS 1662691 - 1663701 911 ## COG2255 Holliday junction resolvasome, helicase subunit 1793 772 Tu 1 . + CDS 1663770 - 1664144 545 ## COG1862 Preprotein translocase subunit YajC + Term 1664149 - 1664176 -0.8 + Prom 1664146 - 1664205 6.4 1794 773 Op 1 . + CDS 1664235 - 1665683 1421 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 1795 773 Op 2 . + CDS 1665683 - 1666798 848 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 1796 773 Op 3 . + CDS 1666858 - 1667817 712 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B + Prom 1667823 - 1667882 2.4 1797 774 Tu 1 . + CDS 1667935 - 1669167 1364 ## COG0513 Superfamily II DNA and RNA helicases + Prom 1669252 - 1669311 3.4 1798 775 Op 1 4/0.036 + CDS 1669393 - 1672029 3547 ## COG0013 Alanyl-tRNA synthetase 1799 775 Op 2 6/0.005 + CDS 1672085 - 1672342 382 ## COG4472 Uncharacterized protein conserved in bacteria 1800 775 Op 3 7/0.005 + CDS 1672342 - 1672788 319 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 1801 775 Op 4 . + CDS 1672772 - 1673086 473 ## COG3906 Uncharacterized protein conserved in bacteria + Term 1673092 - 1673125 2.0 1802 775 Op 5 . + CDS 1673135 - 1674910 1948 ## COG1193 Mismatch repair ATPase (MutS family) 1803 775 Op 6 3/0.062 + CDS 1674982 - 1675494 412 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 1675502 - 1675561 3.1 1804 775 Op 7 . + CDS 1675582 - 1675893 459 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 1675908 - 1675945 6.4 - Term 1675891 - 1675938 9.1 1805 776 Tu 1 . - CDS 1675945 - 1676340 454 ## lhv_0448 hypothetical protein + Prom 1676198 - 1676257 6.9 1806 777 Op 1 3/0.062 + CDS 1676429 - 1677229 861 ## COG0796 Glutamate racemase 1807 777 Op 2 . + CDS 1677226 - 1677843 421 ## PROTEIN SUPPORTED gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase 1808 777 Op 3 . + CDS 1677854 - 1678033 249 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog + Term 1678038 - 1678071 5.4 - Term 1678026 - 1678059 5.4 1809 778 Tu 1 . - CDS 1678063 - 1678884 877 ## COG0668 Small-conductance mechanosensitive channel - Prom 1678909 - 1678968 4.0 + Prom 1678915 - 1678974 8.2 1810 779 Op 1 . + CDS 1679000 - 1679425 560 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 1811 779 Op 2 . + CDS 1679447 - 1679776 526 ## FI9785_505 hypothetical protein + Term 1679781 - 1679814 3.1 - Term 1679760 - 1679807 12.2 1812 780 Tu 1 . - CDS 1679812 - 1680924 1433 ## COG0006 Xaa-Pro aminopeptidase - Prom 1680956 - 1681015 5.8 + Prom 1680892 - 1680951 10.8 1813 781 Tu 1 . + CDS 1681073 - 1682071 1287 ## COG1609 Transcriptional regulators + Term 1682080 - 1682113 6.1 - Term 1682055 - 1682112 15.2 1814 782 Op 1 . - CDS 1682115 - 1683377 1600 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 1683512 - 1683571 8.0 1815 782 Op 2 . - CDS 1683577 - 1684956 1057 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 1685010 - 1685069 4.8 + Prom 1684951 - 1685010 2.1 1816 783 Op 1 . + CDS 1685035 - 1685352 353 ## LGAS_0441 hypothetical protein 1817 783 Op 2 2/0.118 + CDS 1685362 - 1686750 1439 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 1818 783 Op 3 1/0.185 + CDS 1686737 - 1687270 203 ## COG4470 Uncharacterized protein conserved in bacteria + Prom 1687366 - 1687425 10.1 1819 784 Op 1 . + CDS 1687451 - 1687747 285 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 1820 784 Op 2 3/0.062 + CDS 1687798 - 1688061 216 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 1821 784 Op 3 . + CDS 1688115 - 1688663 342 ## COG4478 Predicted membrane protein + Term 1688666 - 1688713 11.2 - Term 1688654 - 1688701 8.2 1822 785 Tu 1 . - CDS 1688710 - 1689561 826 ## LAF_0297 two-component response regulator - Prom 1689691 - 1689750 6.6 + Prom 1689533 - 1689592 6.0 1823 786 Op 1 8/0.005 + CDS 1689827 - 1690828 1363 ## COG0078 Ornithine carbamoyltransferase 1824 786 Op 2 2/0.118 + CDS 1690842 - 1691756 1255 ## COG0549 Carbamate kinase 1825 786 Op 3 3/0.062 + CDS 1691790 - 1693016 991 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 + Term 1693022 - 1693064 7.6 1826 787 Tu 1 4/0.036 + CDS 1693072 - 1694490 1533 ## COG0531 Amino acid transporters + Term 1694518 - 1694553 4.0 + Prom 1694527 - 1694586 7.4 1827 788 Tu 1 . + CDS 1694610 - 1696037 1331 ## COG0531 Amino acid transporters + Term 1696045 - 1696072 0.1 - Term 1696033 - 1696060 0.1 1828 789 Tu 1 . - CDS 1696134 - 1697579 1859 ## COG0366 Glycosidases - Prom 1697662 - 1697721 11.1 + Prom 1697506 - 1697565 5.9 1829 790 Tu 1 . + CDS 1697719 - 1697958 288 ## COG1609 Transcriptional regulators + Term 1698032 - 1698084 2.0 1830 791 Tu 1 . + CDS 1698979 - 1699173 106 ## COG3839 ABC-type sugar transport systems, ATPase components - Term 1700356 - 1700391 4.0 1831 792 Tu 1 . - CDS 1700400 - 1701017 517 ## gi|238854578|ref|ZP_04644913.1| hypothetical protein LACJE0001_0299 - Prom 1701109 - 1701168 12.8 + Prom 1701026 - 1701085 9.7 1832 793 Op 1 . + CDS 1701333 - 1701851 304 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 + Prom 1701953 - 1702012 7.6 1833 793 Op 2 . + CDS 1702147 - 1703565 1737 ## COG3104 Dipeptide/tripeptide permease + Term 1703567 - 1703614 8.1 - Term 1703562 - 1703595 2.1 1834 794 Op 1 . - CDS 1703624 - 1704514 1010 ## COG1250 3-hydroxyacyl-CoA dehydrogenase 1835 794 Op 2 . - CDS 1704525 - 1705352 1071 ## LSL_0135 acetoacetate decarboxylase (EC:4.1.1.4) - Prom 1705449 - 1705508 9.2 + Prom 1705422 - 1705481 10.2 1836 795 Tu 1 . + CDS 1705553 - 1706203 887 ## COG0778 Nitroreductase + Term 1706211 - 1706256 8.0 + Prom 1706240 - 1706299 6.7 1837 796 Op 1 . + CDS 1706334 - 1707002 744 ## COG0518 GMP synthase - Glutamine amidotransferase domain + Term 1707013 - 1707046 1.4 1838 796 Op 2 9/0.005 + CDS 1707075 - 1707281 274 ## COG0673 Predicted dehydrogenases and related proteins 1839 796 Op 3 . + CDS 1707317 - 1708054 848 ## COG0673 Predicted dehydrogenases and related proteins + Term 1708067 - 1708096 1.2 + Prom 1708100 - 1708159 5.8 1840 797 Op 1 . + CDS 1708189 - 1709088 900 ## COG2103 Predicted sugar phosphate isomerase 1841 797 Op 2 . + CDS 1709093 - 1709980 809 ## COG0627 Predicted esterase 1842 797 Op 3 . + CDS 1709995 - 1711425 1195 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 1711441 - 1711485 6.0 + Prom 1711429 - 1711488 9.3 1843 798 Tu 1 . + CDS 1711550 - 1715725 3208 ## COG3513 Uncharacterized protein conserved in bacteria + Term 1715746 - 1715784 6.3 + Prom 1715863 - 1715922 4.8 1844 799 Op 1 4/0.036 + CDS 1715948 - 1716856 715 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 1845 799 Op 2 . + CDS 1716834 - 1717139 210 ## COG3512 Uncharacterized protein conserved in bacteria 1846 799 Op 3 . + CDS 1717136 - 1717804 555 ## Lbuc_1874 CRISPR-associated Csn2 family protein + Prom 1719357 - 1719416 6.7 1847 800 Op 1 . + CDS 1719522 - 1719791 313 ## gi|238855162|ref|ZP_04645484.1| hypothetical protein LACJE0001_0482 1848 800 Op 2 . + CDS 1719869 - 1720150 207 ## lhv_0953 hypothetical protein + Term 1720174 - 1720215 -0.9 + Prom 1720367 - 1720426 8.2 1849 801 Op 1 . + CDS 1720616 - 1723000 2708 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Term 1723020 - 1723049 1.2 + Prom 1723002 - 1723061 6.2 1850 801 Op 2 . + CDS 1723088 - 1723498 333 ## COG0242 N-formylmethionyl-tRNA deformylase 1851 801 Op 3 . + CDS 1723552 - 1725264 917 ## LBA1284 cell division protein + Term 1725271 - 1725318 5.2 - Term 1725259 - 1725305 9.5 1852 802 Tu 1 . - CDS 1725310 - 1725981 315 ## LGG_01093 hypothetical protein - Prom 1726057 - 1726116 6.5 - TRNA 1726112 - 1726195 54.4 # Leu CAG 0 0 1853 803 Op 1 . + CDS 1726268 - 1727113 327 ## PROTEIN SUPPORTED gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 1854 803 Op 2 . + CDS 1727125 - 1728393 983 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Term 1728515 - 1728563 -0.6 + Prom 1728558 - 1728617 6.6 1855 804 Op 1 . + CDS 1728644 - 1730320 2138 ## COG0018 Arginyl-tRNA synthetase + Term 1730321 - 1730358 3.1 1856 804 Op 2 . + CDS 1730399 - 1731310 1238 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 1731335 - 1731368 3.1 1857 805 Op 1 . - CDS 1731337 - 1732086 787 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 1858 805 Op 2 . - CDS 1732074 - 1732199 212 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family - Prom 1732406 - 1732465 5.8 + Prom 1732201 - 1732260 7.3 1859 806 Op 1 . + CDS 1732283 - 1734340 1995 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 1860 806 Op 2 2/0.118 + CDS 1734351 - 1734713 529 ## COG3679 Uncharacterized conserved protein 1861 806 Op 3 . + CDS 1734716 - 1735540 647 ## COG0420 DNA repair exonuclease 1862 806 Op 4 . + CDS 1735419 - 1735937 347 ## lhv_1665 phosphoesterase 1863 806 Op 5 . + CDS 1735918 - 1736226 246 ## COG4717 Uncharacterized conserved protein + Prom 1736254 - 1736313 6.4 1864 807 Op 1 3/0.062 + CDS 1736346 - 1738331 1597 ## COG4717 Uncharacterized conserved protein 1865 807 Op 2 . + CDS 1738341 - 1739315 932 ## COG3481 Predicted HD-superfamily hydrolase + Term 1739328 - 1739357 1.4 - Term 1739300 - 1739358 10.5 1866 808 Tu 1 . - CDS 1739371 - 1740285 1010 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 1740405 - 1740464 6.8 - Term 1740430 - 1740476 4.2 1867 809 Op 1 . - CDS 1740480 - 1740833 460 ## gi|238855145|ref|ZP_04645467.1| conserved hypothetical protein 1868 809 Op 2 . - CDS 1740864 - 1741295 508 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases + Prom 1741207 - 1741266 9.7 1869 810 Op 1 7/0.005 + CDS 1741380 - 1742123 254 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 1870 810 Op 2 . + CDS 1742116 - 1743294 837 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 1871 810 Op 3 . + CDS 1743306 - 1743959 794 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 1872 810 Op 4 2/0.118 + CDS 1744021 - 1744341 471 ## COG0526 Thiol-disulfide isomerase and thioredoxins 1873 810 Op 5 . + CDS 1744360 - 1744923 642 ## COG0073 EMAP domain + Term 1745012 - 1745071 10.8 + Prom 1745054 - 1745113 12.8 1874 811 Tu 1 . + CDS 1745194 - 1745721 190 ## LGAS_1300 hypothetical protein + Term 1745733 - 1745767 5.3 Predicted protein(s) >gi|313656766|gb|GL545251.1| GENE 1 1898 - 2803 709 301 aa, chain - ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 286 130 420 428 169 35.0 4e-42 MTSIARENNLSVNTVQRILASCSHRFIDNYNYLPEHLAFDEFKGVDKKLHFICLDGQKHE VVQILRNRYKKSLLKYFGKFSPSARANVKTVSMDLNFYYQNIVRACFPNAEIIIDRFHMV QMLTRSFNSLRVLVMKSFDKRARQYQLFKLPWKLYLKSFVDLDKIHPHYNWHFKDYLTQE QVVMEGISCDPRLDNAYNLMQDFMAALKARDTNSLKEIINSKAEVGTLMHKTLLTFKHNL RAVLNGARFSYSNGCLEGFNRKIKQIERTAYGYSNYINLLTRIRLEENKVKEKEPSNLYI A >gi|313656766|gb|GL545251.1| GENE 2 2814 - 3161 80 115 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0944 NR:ns ## KEGG: LDBND_0944 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 112 1 113 424 160 69.0 2e-38 MSSYNDCIKFSLDIQDPNITFNAHFFKLINGIKYKVFQATLIQPACPFCGSVNLIHNGHL QTNIRFITSNASSPVIIRLNKQRVLCRDCNTRSMAKSKLVNKYCSISNPASFCFN >gi|313656766|gb|GL545251.1| GENE 3 3331 - 4269 698 312 aa, chain - ## HITS:1 COG:L39484 KEGG:ns NR:ns ## COG: L39484 COG1597 # Protein_GI_number: 15673780 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 8 289 3 281 302 126 31.0 5e-29 MKNKNPKFSIIVNLKAGSGHAKKIWPIIERESKRKSFVYDCFYTKAIGHAQELAKEIAYK HECDLVLVLGGDGTLHEVINGLLFAKQKNPIPVSYIPTGSGNDFAKSYGISNLPLEALEQ IINCKNTKNICVGHYIEQIGGREGYFINNLGIGFDARIVHKTNSSLTKMGLNKLNLGQFS YALKGFSAFLTQNTFELIIGDKHFKRAYISIVNNVPYIGGGIKVSPEMSPFKNGLELFVV EKKNIPSLLKILRLFILGKIDKSPYVHRIKNKKLAIKTKNSQFIHLDGEEFAKAEVNLRI DTQTYPFWQLTN >gi|313656766|gb|GL545251.1| GENE 4 4466 - 7204 2845 912 aa, chain + ## HITS:1 COG:lin2460 KEGG:ns NR:ns ## COG: lin2460 COG1511 # Protein_GI_number: 16801522 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 11 898 13 908 927 409 32.0 1e-114 MEKVSKWLKSKSFLKLIMISVAVLAPIFYSLSFIKSVWNPYAGAKNLPIAVVNKDKAVKY NRKTLAVGNQTVAQLKKNHDLKWIFVSENVAKKGLKNREFYTVVTIPSDFSKNAATVMSK QPKQMHLKYKTNDSLNYLAETMSEVGIKQLNTMIRSAVTKAYATAMFSQLKTLGAGMNKA ASGAQQISDGTVVLANGTKQYTAAVSQINNGVQTLKVSVAPLKSGASQLASGSAALANGI SQYTAGVDKLNSGVNTLNGKSSDLLTGMNTFNSGLSQYTAGNTKLNTGLNTLSSNSAALR MGVASLKSASNQFGLLNNGASQVATGVQTFNSKLQSSNIVGSLTQALSMQEQVASLEKQL TTVQSLLKQLSSIDVNSLTTAVDKLQNQAFTTAADMGNLYTSLDDNQKISDDADQINSLL NNDKSLSSDTKAKLANLATEIKTKATDSTNQINSANDSWGNLLGVMLDTQSTLQPQLDTV QNLSQKLPALQSTMTQAQSLLTQTDTLLSALKKNQDLLTAMPTQLASLQSATGQIAVGTQ KLANSTGSINTLVNGINQYTSGVDTAANGAAQLASKSDRLISGFKLLYDGTNQYTQGVSQ VKAGTNTLVSNNASLNSGASQLSTALSSLNLQVPSLIDGVNQLATGTQILNGKSDKLLNG MTQLSSGSNKLATQLNSGANKVNSNIGTPNNAQMFASPTSLQHTSTSTVPNYGHALAPFA MATGLFIGVLIFTLEFPANRRHKTPRDAVKVLNEEFKRAVSVSLAMVVILNMIMILSGLK VDHIFDLFWVCLIYTLAQMAIMQFLTLIMGRLGTIIGLLLFVASIGGAGGMFPMQVTNSF FNAIHPFLPMSYAINGLRQAITGGLGNSYASINALVLLGVAVLFYLLFLLAASTLIKRDV LVTDTKEITQEI >gi|313656766|gb|GL545251.1| GENE 5 8430 - 9596 1238 388 aa, chain + ## HITS:1 COG:SPy0516 KEGG:ns NR:ns ## COG: SPy0516 COG0438 # Protein_GI_number: 15674620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 384 1 387 444 357 47.0 3e-98 MNIGLYTDTYFPQISGVATSIQTLKRALEKQGHNVFIFTTTDPHVGKGVVEPNVFRFSSV PFISFTDRRIAFRGLFEATRVAKEVQLDVVHTQTEFSMGLIGKYVAHQLNIPAVHTYHTM YEDYLHYVLNGNLLRPVHVKQFTKAYLKNMDGVIAPSKRVEKLLDRYGVQIPIKVIPTGV DIEAMNGDQRRDVRPELGIAPDDLVILTLSRIAAEKKIDRILDLMPELLGQFSNLKLVIA GDGPDVDLLKDQVERLSIEDYVIFTGDVPHEDVGNFYRMADLFVSASDTETQGLTYIEAL AAGTKSVIFDTDYTENVFDDVEFGQVFNSQREMKEAIISYLKQGKQAINPTKLKTKLENI SATHFGKEVVDFYKAAIDAYSNKEVNDD >gi|313656766|gb|GL545251.1| GENE 6 9589 - 10635 798 348 aa, chain + ## HITS:1 COG:SP1075 KEGG:ns NR:ns ## COG: SP1075 COG0438 # Protein_GI_number: 15900944 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 6 342 1 338 338 349 51.0 6e-96 MIRINMFSQADSVKGQGVGSAYQELINLMRTRLVDDFYMTINKYGQSDLTHYHTINPTYF LNSFSPARGRKIGYVHFLPETLEGSIKLPTPAKNAFYNYVINFYKRMDQIVVVNPIFIDK LVAHGLDRNKIKYIPNFVSKDEFYTKTTVEKNAFRNQLGIPLDKFVIFGDGQVQERKGVD DFAKLAEANPDIQFIWAGGFSFGKITDGYEHYRNLVENPPKNLIFTGIVKREELVNYLNI ADLFLLPSFDELFPMSVLEAFSCGTPVLLRNLDLYKAIIDGYYMYGTDFGTLDEKIREIK ANPELLKKYASLSTKASEKYSEEHLAEIWRNFYLEQYELGVKLGQIHL >gi|313656766|gb|GL545251.1| GENE 7 11034 - 11636 455 200 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 4 193 144 333 357 72 25.0 7e-13 MGFFTGHQLLGEMDHFNIVIVISFLIHLSTIIFLLFGMFARKTLKRIGALLFKLGGYFTS SRKLINLQESFDQQVDEYYLESQKLFQHKKSLVISFILTCIQLTLFYSVPFLTIKALNLS GSWVELMHLNILVALFMAVIPIPGASGGAELGFQTLFKFFVKNGAQLVLGMFIWRFATYF FGMLLGVIAWLIRPKKNIRG >gi|313656766|gb|GL545251.1| GENE 8 11730 - 13805 1837 691 aa, chain + ## HITS:1 COG:BS_yfnI KEGG:ns NR:ns ## COG: BS_yfnI COG1368 # Protein_GI_number: 16077793 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Bacillus subtilis # 11 653 18 653 653 595 50.0 1e-169 MSRAKKIANWLFHTKLGYFSVVLTLFWIKTYLIYITKFSLGATGAMQNFLLLLNPIPAGM LLLGIGLFVKGRKSYWIIWIIDFIMSFWLFANILYYREFSNFLSFAIMSTSGSTSDNLGK SIAGITKATDFLVFLDLVIILALILFKVFKIDVRPLKLKVTSLIELLALSLMALNLFMAQ KDRSGLLTRTFDNNYIVKYLGMNEYALYDGVKTAQNNAEMAKANASDLKSVQAYLQKHQV TPNASYTGVAKGKNVLIIHLESFQQFLIDYKWKGKEVTPNLNKLYHQSDTLSFDNFFNQV GQGKTSDAELMLENSLYGLSSGSAMSSYGTANTFEAAPAILGQDGYTTAVMHGGEGSFWN RNNAYKQFGYQYFMPLSYYVNKKSYYIGYGLKDKIFFSQSIKYIERLPQPFYLKMITVTN HYPYELDKKNQSISKTDTGDSTVDGYVQTAHYLDQAIGELMSYLKKTGLEKNTMIVLYGD HYGISGNHHKAMAQLLDKKGYNDFDNLQQQRVPLMIHMPGLKGGINHTYGGEIDVLPTIM NLLGYNDTNTIQFGHDLLATNREQLVVQRNGDFVTPKYSKVTGTYYYTKTGKKVKNPSKK VKEELASLSNQVTTQLSLSDRVIRGNLLRFYHPSWFKPVNAKDYNYQKKIALKNLYAEDK KKKSSLWYQNGKKTTQSDFTTDAPELKKSSN >gi|313656766|gb|GL545251.1| GENE 9 13902 - 14924 1400 340 aa, chain + ## HITS:1 COG:BH3248 KEGG:ns NR:ns ## COG: BH3248 COG0773 # Protein_GI_number: 15615810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Bacillus halodurans # 8 338 4 334 433 367 53.0 1e-101 MLDKTKQYWFIGIKGTGMASLALIMHDLGFNVAGSDIDMETFTQKPLEDKGIVIKSFNRD NITPAQVIVKGNAFKEENPEVAAALEMKVPMHSYPDTVEEIIQQYTSIGISGAHGKTSTT ALLSHVLTEAAPTSYLIGDGEGRGVKDSRFFVYEADEYRRHFLAYHPDYQIMTNIDFDHP DYFKDINDTQSAFQSAADQTKKALFVWGDDPRLQKIETKIPKYTYGFKDSDDFQAYNVKK STDGTSFSVKAHGKEIGEFKTHLFGDHNIMNSLAVIGVALTEEVPMEDIQKGLLTYGGAK RRFSEKDFGDITVIDDYAHHPTEMRATIQAAKQKFPNKNW >gi|313656766|gb|GL545251.1| GENE 10 14918 - 15208 220 96 aa, chain + ## HITS:1 COG:BH3248 KEGG:ns NR:ns ## COG: BH3248 COG0773 # Protein_GI_number: 15615810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Bacillus halodurans # 1 96 336 431 433 101 47.0 4e-22 MVVVFQPHTYSRTKEFASEFIEILRGVDKAYITPIFGSAREKSGDISSEDLTSQIPGSEV IDIANIADLTKNRNSVVVFMGAGDIEKYEDAFEKLI >gi|313656766|gb|GL545251.1| GENE 11 15312 - 17321 1864 669 aa, chain + ## HITS:1 COG:SP0032_1 KEGG:ns NR:ns ## COG: SP0032_1 COG0258 # Protein_GI_number: 15899978 # Func_class: L Replication, recombination and repair # Function: 5'-3' exonuclease (including N-terminal domain of PolI) # Organism: Streptococcus pneumoniae TIGR4 # 1 312 1 308 316 353 56.0 7e-97 MANKKLLLIDGNSVAFRAFYALYRQLDRFQNPEGLHTNAIYAFKNMLDVILKQENPSHVL VAFDAGKVTFRTKLYSDYKGGRQKTPGELLEQIPYIKEMLKDLGIKSYELVNYEADDIIG TYSKMGEEAGYQVAIVSGDKDLTQLASDSTTVYVTKSGVSELEAFTPEHMKEVNGVTPTE FIDMKALMGDNSDNYPGVTKVGPKTASNLIQKYGSVENIYKHIDEMKKSKLKENLINDKD KAFLAKTLATIDRTSPVEFKLDELKKQETNVVDLRKFYEQMNFRRFLAELNNSNSEIGEV SDKKVDYIVLDEQNLNKLPNVKSEVSFYLGMFGENYHLADFVGFSLKMGDNVYVSNDVSL LTKQPLQTLLEDQAVNKNVFDLKRTIVGLHRLGIKANNINYDMLLASYLVNNENNSNDLG EICQLYNYYDLQPDVDIYGKGKKAAIPDEEIFFNHLAGKVLAIEALKPTLLKRLTEHEQD DLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRLTELEADIYLEAGERFNINSP KQLGQILFEKLELPPIKKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQIAKIQSTYVKGL LDVIQPDGRVHTRYQQTLTATGRLSSVDPNLQNIPVRLEEGKRFVKHLFLQIKMDISFLV TTHKLSCEF >gi|313656766|gb|GL545251.1| GENE 12 17345 - 17968 630 207 aa, chain + ## HITS:1 COG:SP0032_2 KEGG:ns NR:ns ## COG: SP0032_2 COG0749 # Protein_GI_number: 15899978 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Streptococcus pneumoniae TIGR4 # 3 207 357 561 561 268 61.0 6e-72 MQEAFKTGYDIHAHTAMKIFHLDSPDEVTTNMRRHAKAVNFGIVYGISDYGLSKNLGISR KQAKEFIDNYFEQYPKIKDYMDKEINFAREKGYVETIMHRRRYLPDIHAKNFNVRSFAER TAINSPIQGGAADIIKIAMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVP EVMQNAVHLDVPLVADSNWGHDWYEAK >gi|313656766|gb|GL545251.1| GENE 13 17981 - 18394 341 137 aa, chain + ## HITS:1 COG:BH3152 KEGG:ns NR:ns ## COG: BH3152 COG0266 # Protein_GI_number: 15615714 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Bacillus halodurans # 1 136 1 137 274 132 52.0 2e-31 MPEMPEVETVRKTLTELVLGKTIEKAKVWYPNIIIGDSESFCNQLKKKKIIKIDRYAKFL LFRLSDNITIVSHLRMEGKYRLATPHEEKNKHDHVEFIFTDGTSLRYNDVRKFGRMQLVE TGTEKQKTGIKKLGPEH >gi|313656766|gb|GL545251.1| GENE 14 18430 - 18801 72 123 aa, chain + ## HITS:1 COG:lin1599 KEGG:ns NR:ns ## COG: lin1599 COG0266 # Protein_GI_number: 16800667 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Listeria innocua # 1 110 151 260 273 106 41.0 1e-23 MRNKKKNIKAVLLDQNVVSGLGNIYADETLWLSKINPERPGNSLSCDEITSLYKAINQVI SQAIKAHGTTVHSFLDAEGQTGGYQKYLKVYGRAGKKCFRCGATLQKIILLVAERLFALN AKR >gi|313656766|gb|GL545251.1| GENE 15 18806 - 19420 326 204 aa, chain + ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 190 1 193 197 136 39.0 2e-32 MTFYLAITGGIASGKTTADNYFKELGLPVIDSDEIAHNLLKRNTEVTKQICQLFGQSCIL PSGDVNRKELGRLVFNDSEKLKLLNQITHPAIFAEIKRKKAAIKSGICVVDIPLLFESKQ QKYYDASLLIYVPEQVQLERLMRRDNLDREHAMAKIKSQMSTNMKLKLATYSVANTGTIE VLQDKLNKILQEVKEKEDAMSKLS >gi|313656766|gb|GL545251.1| GENE 16 19398 - 19865 482 155 aa, chain + ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 152 1 152 153 180 57.0 1e-45 MQCPNCHKNSSKVIDSRPTDEGRTIRRRRECENCGYRFTTFERVEQTPLLVIKNDGTREP FDREKILRGVAAAAQKRPVTSEQLDELVDHVENEIRKQGVSEISSKEIGKLVMNELVNVD DVAYIRFASIYRQFQDISGFMKTMKDIMDKHEHSN >gi|313656766|gb|GL545251.1| GENE 17 19882 - 21189 798 435 aa, chain + ## HITS:1 COG:BH3145 KEGG:ns NR:ns ## COG: BH3145 COG3611 # Protein_GI_number: 15615707 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Bacillus halodurans # 2 422 5 439 485 93 23.0 6e-19 MYKNADPRLTYFVLNRVDLAKKQEQVLTRLYQPLIGPVAMSLYLTLVDDYQHVPIKSQGK RLYQLQEILDIKLEDIFKSLHKLEATGLVKTFHGEMLGVGDYLAFQLIDIPEASEFFKTL LLSSLLLEKVGTTRFQSLNKEFNPTLPGFIKDGRDVSADFFDVFRLSAEKAINPDEQVLN AANLADQKAADLVKDKMSPIDWNFVKELFSKYGISANEVDSHAGQMAQLMHFYGLSEQDF VNQVATTIIAGQDQLNIKQMQYRLNELATQNHSQKQIAQAFKRGNVQNNSPVSLNQSERE LLEMAQSLSPLKFLETLKSQKGGFVTYNERNVIRRLQLNYNLPDAWVNILIKTCLDYDSV LSDNITGRIANSWLQHQVTTPEAALKFTREWQKRKANNFSKKELKRERTGRRRLLRIRLI KKAVQAPLMIKICLK >gi|313656766|gb|GL545251.1| GENE 18 21245 - 22141 604 298 aa, chain + ## HITS:1 COG:lin1595 KEGG:ns NR:ns ## COG: lin1595 COG1484 # Protein_GI_number: 16800663 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 2 296 8 307 307 188 36.0 1e-47 MLGNAFTQHNKDRKIDSKALINEALQDSEVQAFIKQNQVPKEVVLSSLNNIFQFHQQKEA AKTGSNPIPGYLPKLILHGSTIDLAYAPTKEKSKELVRQKASRHLELIDIPKRYRNVTSK DIIANEDRKAAIIAINNFLMEIQGHEYKQGLYLQGDFGVGKTYLLAWLARALAEMGKKVI FLHTPSFFANLSTHIKEQNLDEEINRISQADILILDDIGAESLSQWSRDDVLGVILQYRM DNLLPTFFSSNLSFDDLEKHFEETRNNIEPVKAKRLMQRIKFLGKEVDVGGKNLRLDD >gi|313656766|gb|GL545251.1| GENE 19 22164 - 23612 1305 482 aa, chain + ## HITS:1 COG:L49741 KEGG:ns NR:ns ## COG: L49741 COG3590 # Protein_GI_number: 15673785 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Lactococcus lactis # 24 471 5 446 627 275 35.0 1e-73 MRRFMQVRGGAGDLTKADVNASPKDNLYLAVNSTWQKDAVIPEDRTEIGVNTEIDMRIEK RMKDDLEALIAGKEDVNSVPNLAKAVTFYQVALNLDKRNADKTLPIQKDLHELLDLKNFS AFNTLASKNLTQILNSAVILPFAFEVDTDMKDTQKHALYFAGPGTFLPDTTSYKSPDAEK LLDILAEQTEKILEMAGVSKVEAKNLVKDGLAFDQKLAQVVKSTEEWSDYPACYNPLALD EFLSKFKSFTIKTYLENLLEKLPERVIVMEPRYLDKIETLFNPDNFTQIKGWMVMKFINN SARFLSQEMREASFSFHQAISGMAELPSVQRQAYYLTNGFFDEVLGVFYGQKYLGKAAKA DITQMIKQMIKVYEDRIQNNTWLSQATKDKAIVKLNALVLKIGYPEKLETIYDELTVDPE LSLYENEKECTLIKAKYQLAKLFKPVNRNTWLMPGNMNNACYDPQRNDITFLPGFCRHHF MT >gi|313656766|gb|GL545251.1| GENE 20 23588 - 24118 453 176 aa, chain + ## HITS:1 COG:SP1647 KEGG:ns NR:ns ## COG: SP1647 COG3590 # Protein_GI_number: 15901483 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Streptococcus pneumoniae TIGR4 # 1 176 454 630 630 185 51.0 4e-47 MQAPFYDLKQSRSANYGGIGATIAHEISHAFDNNGAKFDELGNLTNWWTKQDFDEFEKRT QAAVDLYDGVQYGPSKLNGRQIVAENIADLGGLTCAIQANKLENGNMKELFENYACSWAQ LQRPAAIKTEVSVDVHAPQPTRVNLPVQCQLEFYETYQVSQNDGMWLDPDKRVKIW >gi|313656766|gb|GL545251.1| GENE 21 24410 - 26341 2900 643 aa, chain + ## HITS:1 COG:L0357 KEGG:ns NR:ns ## COG: L0357 COG0441 # Protein_GI_number: 15673893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Lactococcus lactis # 5 641 4 644 646 783 58.0 0 MSFSITLPDGSKKDFDQAVSVLDLAKGISTSLGKAAVAAKVDGEVKSVNFMLEKDSEVAI LTDKDEAGLAVLRDTVAFLLEAAAQAKYPELRLGEHEANEDGFFVDTDKEDQIKVTELPE LEKAIAKLIKNGQAIEPVMVKKSELEAQFKNDPFKMELLKSEGDEVAAFKMGDFVDFGFA ALLPNSGKVKHFKLLSVAGAYWQGKSSNPMLQRLFGTAFFKEADLEADLKRRAEIKERDH RTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKELADGYQHVYTPVLMNLDA YKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPIRIAELGMM HRYEKSGALSGLQRVREMTLNDGHTFVALEQVQEEFAKILKLIMDVYKDFDITDYYFRLS YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKTALGND ETMSTIQLDFMLPERFDLSYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTWL APEQVEIIPVNLDAHGEYAKKVRDELLKHGFRAEVDFRNEKMGYKIRESQTQKVPYTLVL GDDEMNSNAVNVRPYGTEKQESMSLDQFINELQADVDSYSREK >gi|313656766|gb|GL545251.1| GENE 22 26437 - 26727 120 96 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRATGGLAFGEISTKSKSASAAWFKASFLETTPTCSPSSPIKRTSRARMLSFKIKFRGIT IHLHVNLRTRKKRVWIKQPAFNQQKLSISLEVLSLT >gi|313656766|gb|GL545251.1| GENE 23 26570 - 27079 408 169 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 1 165 1 166 166 161 50 8e-38 LNESIRAREVRLIGEDGEQVGVVSKNEALNQAADADLDLVLISPNAKPPVARIMDYGKYR FEQQKKLKESRKKSKTVSVKEIRLSPTIEGNDFDTKLNHVRKFLSKEGAKVRVSIRFRGR AITHTELGLEVLEKMAEATKDIANVTAKPKMEGRSMFLMLAPKSEKDKK >gi|313656766|gb|GL545251.1| GENE 24 27109 - 27309 345 66 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526539|ref|ZP_03956588.1| 50S ribosomal protein L35 [Lactobacillus jensenii JV-V16] # 1 66 1 66 66 137 100 2e-30 MPKQKTHRASAKRFKRTGNGGLKRHHAFTGHRFHGKTKKQRRHLRKAAMVSRSDLKRIKQ MLSQMR >gi|313656766|gb|GL545251.1| GENE 25 27353 - 27709 592 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526538|ref|ZP_03956587.1| ribosomal protein L20 [Lactobacillus jensenii JV-V16] # 1 118 1 118 118 232 100 4e-59 MPRVKGGTVTRKRRKKVLKLAKGYRGSKHLQFKAASTQLFVSYKYAFRDRRKRKSEFRKL WIARINAAARQNDLSYSKLMHGLKVAGVDINRKMLADIAYNDEKTFAELAATAKKALN >gi|313656766|gb|GL545251.1| GENE 26 27947 - 28249 372 100 aa, chain + ## HITS:1 COG:lin1675_1 KEGG:ns NR:ns ## COG: lin1675_1 COG1012 # Protein_GI_number: 16800743 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Listeria innocua # 8 100 5 97 455 84 45.0 7e-17 MVLAKKSESQTNNEASVQSMINKYVKRAHESLDIMANFDQEKIDKICEAVAIAGEQNNYA LAKMAVEETGRGVVEDKAIKNMFATENIWNSLRHEKTVGV >gi|313656766|gb|GL545251.1| GENE 27 28281 - 29675 1375 464 aa, chain - ## HITS:1 COG:SPy0198 KEGG:ns NR:ns ## COG: SPy0198 COG2801 # Protein_GI_number: 15674400 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 196 462 8 267 268 239 51.0 7e-63 MSKLTKKDKLNIYKEWTIENKRSAYLSKKYGIGSASIKYLVSLIHRHGIGILDKPYTYYS AQFKLEAINRVLVNHEAAYSVSLELGLKSQGILINWIRSYKENGYNVVIKRKGRQACEEQ RAREIEERKRRIASPEFKAYCRERIYKKIGCLGSKEKKPTKIEIAQAVRELRLELGLGVK TILLILNDPNNNLPSLSRSNYYDILKREDQDEIKHHNLIKRIKEIYFELKARYRAPGYRV IADHLHNEGFKVNRKTVYRLMRKLNLIGYRMKRRRRYDSFEGEIEGRIKPNLIKRNFFAI RPNMKWYTDITEFNLRGQKLYLSPIIDGCGRDIVAYNISRRPNLQQVMTMLDDAFKVNDS LNGLVFHSDRGWQYQHKTYQYELARRGIEQSMSRKGCSPDDGLMEGFFGILKREMFYGKE SNYANLNELEQAIKDYIHFYNYERTKSKLKGLTPIQYRNQSLVA >gi|313656766|gb|GL545251.1| GENE 28 29834 - 30997 1072 387 aa, chain + ## HITS:1 COG:SA0143_1 KEGG:ns NR:ns ## COG: SA0143_1 COG1012 # Protein_GI_number: 15925852 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 1 322 137 458 458 402 59.0 1e-112 MIALKTRNTIIFGFHPQAQRCCVKTAEIIRKAAVSAGAPKNCIQWIEKPSIEATGALMNH PEVQLILATGGPAMVKAAYSSGKPAIGVGPGNGPAYIEETADIKRAVYDIVLSKTFDNGM VCASENSVVVDSSIYEQVKKEFASWKCYFLKKNEIKPFTEKFIDPKRGTVAGPIAGKSAY EIAKLCGINVPEDTKVLIAEYKGVGKDYPLSAEKLSPVFTLYKAKNHEDALRICTELLNY GGRGHTAGIHTNNQALIKEFSIKMSACRILVNTPAALGGVGDLYNNLLPSLTLGTGTYGA NALSHNVSASDLLNIKTVAMRRDNMQWVKVPKKTYFEHNAANYLRHMPDVSRFFIVTDQT VANEFGNRITDILANRLGEKVMRFFKR >gi|313656766|gb|GL545251.1| GENE 29 31042 - 32022 1043 326 aa, chain + ## HITS:1 COG:SA0143_2 KEGG:ns NR:ns ## COG: SA0143_2 COG1454 # Protein_GI_number: 15925852 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Staphylococcus aureus N315 # 4 324 86 407 411 341 50.0 1e-93 MKIFKPDVIIALGGGSVMDAAKAMRLFYENPDMSFEDSYQKFLDIRKRTVRFPKDNKVKL VCIPTTSGSGSEVSPFAIIKDAKTGIKHPLCDYSLNPDVAIVDDQFVQNLPENLIAAAGF EALAHAIESYVSTMATDFTRGWSMEAIDLIFENLEKSYKGDLAARNRMHNAATLAGMAYG NAFLGVGHSIAHCLSSHFNLPSGVSDILVMPAVIRFNAQRPNKLAMWPHYATYRADRDYA KIAQSLGIKGTKNDELIEGLCQKISDLAHSLDISLSLKDYGISKSEFEKQLGEIAVEAYG DQNTVTNPSAMLISEIKDLLLKIYQA >gi|313656766|gb|GL545251.1| GENE 30 32110 - 32640 432 176 aa, chain + ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 153 25 175 194 147 49.0 1e-35 MIFRPIYTIDTIYHLDPTGLRRMGIKAVFSDLDNTLLAWNIRESSQEMAILNKKLAKAGI KLIVISNNNPDRVSEAVSKFNVAFWANARKPLPFGILKALKHYNLSKEDVIMVGDQLITD IQAGNLAGVKTVLVKPLVETDKWNTRINRFFEKIIFFFLNINKKIEFKESLKWMKN >gi|313656766|gb|GL545251.1| GENE 31 32625 - 33734 1052 369 aa, chain + ## HITS:1 COG:SPy0306 KEGG:ns NR:ns ## COG: SPy0306 COG1161 # Protein_GI_number: 15674473 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 3 369 2 372 372 382 50.0 1e-106 MDEELRCIGCGAILQSEDENEAGFLPASALNKALDGEDKEIYCKRCFRLRHYSEIMPVEL NNNDFLRLLNSLGDKKALIVNVVDLFDFNNSLIPSLKRFVGNNDFILVGNKVDLFPLNSK ESKIKDWMRQEANRMGLYPKDIFLISAAKKRNLQDLITYLDQASQDQDVYFVGTTNVGKS TLINSIIDLMGDVKDLITTSRFPGTTLDQIKIPLDSGHYLVDTPGIMTEKQLASYLNAKD LDLIAPKKPLKPATYQLNSGQTLFLGGLGRIDFISGKKTSFTVYTARGLYVHRTKTTNAD DFYEKHVGDLLTPPHGDENLPAMKGQTYHPTTKSDLLFGGIGFITVPAGVVVKTYLPGGI GQGIRRALI >gi|313656766|gb|GL545251.1| GENE 32 33748 - 34377 675 209 aa, chain + ## HITS:1 COG:BS_yqeJ KEGG:ns NR:ns ## COG: BS_yqeJ COG1057 # Protein_GI_number: 16079618 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Bacillus subtilis # 22 207 2 187 189 174 43.0 1e-43 MDCVVANKPKVRAQEIKKISGKQIGIMGGTFNPVHIAHLVAAEQVMTKLHLDEVWFIPDN IPPHKELALNIPAEDRANMLELATKNNPKFKVMLLELYRGGISYTIDTMHYLKKEAPENN YYLIMGSDQVNSFHTWKDADELARLATLVGIRRPGYTQEAHYPLIWVDAPDIRLSSTAIR HAVKTGTSIRYLVPDSVREYIEQRGLYRE >gi|313656766|gb|GL545251.1| GENE 33 34445 - 34978 455 177 aa, chain + ## HITS:1 COG:SP1746 KEGG:ns NR:ns ## COG: SP1746 COG1713 # Protein_GI_number: 15901578 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pneumoniae TIGR4 # 1 171 22 190 197 160 46.0 1e-39 MDEARFRHCQGVSITARKLAKLNNYDEDKAALAGFIHDYAKQVANDEFIRVIKDPKNNFN QDLLNWNRAIWHGIVGTYFIKRDLSITDSEILTAIKRHTTGDVEMTTLDKIVFVADYIEP GRSFSGVDEAREVTFSNLDAGVGYELAHTLQFLANNRQKIYPKTLAAYNVWGIKKEK >gi|313656766|gb|GL545251.1| GENE 34 34981 - 35328 411 115 aa, chain + ## HITS:1 COG:BH1328 KEGG:ns NR:ns ## COG: BH1328 COG0799 # Protein_GI_number: 15613891 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Bacillus halodurans # 1 112 1 112 117 89 33.0 1e-18 MNSEKLLDITLDAISDRHGEATEAYDMRGISILADFYIVTSASSNRQLHALVNSILDKVR EYDYHDYRVEGTRDSNWLLVDLGDVVVNIFTEDARDFYGLESLWANGKKLDIPED >gi|313656766|gb|GL545251.1| GENE 35 35331 - 36482 1111 383 aa, chain + ## HITS:1 COG:BS_ylbM KEGG:ns NR:ns ## COG: BS_ylbM COG1323 # Protein_GI_number: 16078570 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Bacillus subtilis # 1 380 1 403 415 212 32.0 8e-55 MSVVGIIAEYNPFHSGHEFLMNQARLKAGEDPIIVIMSGNYVQRGEMAITDKWTRAKYAL ASGADLIFQMPFATSVQAADIFAKGSMEILSKLGCEELVFGVEDANLNFAYLGEKIKQIP KNKMDFNDYTQTYSTQYNQMVAREVGKEVNEPNIILALAYAVANADLSRKLKLSPITRIG ANHDDLLERERVVQSASAIRNLLLEQPNLADLKQWVPKAEAEQLLTQKIYPNWNLLFPFL KYRIESASLTDLQQIYQMSEGLEYKLKAEIHEARDFTEFLRRIKSKRYTYSRLRRLCLYT LLGVTNTDIINSHDVSTILLGYSKRGRNYLKQIRKEVELPIISKVDHKNSQKGSLALDVR VDRLFEQIIGQDQNFGQKPMEVK >gi|313656766|gb|GL545251.1| GENE 36 36482 - 37027 615 181 aa, chain + ## HITS:1 COG:SP1280 KEGG:ns NR:ns ## COG: SP1280 COG1399 # Protein_GI_number: 15901140 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Streptococcus pneumoniae TIGR4 # 2 179 1 180 180 75 32.0 5e-14 MLTINFSQIKKSKEPLTEISTELETRPEFFERAKELLLDANNIQVKGQMFYQEPFVTGNF QVEADIVAPSSRSLAPVPMHLSFSFTENYLDREPTNEEKEEVDMIVPIEKDIIDLQTAVE DNLLLSLPTTILTKDEEENNEFPQGTGWEVVSEESLEEQNDEKINPAFAKLKDLFPEDDK N >gi|313656766|gb|GL545251.1| GENE 37 37202 - 37924 1058 240 aa, chain + ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 230 1 225 226 272 69.0 4e-73 MAKILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPDLNG LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVN IEKKVSSNTAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSR EQLLNKIWGPESNIETNVVEVYVRYLRNKIDAPDRPSYIKTVRGTGYMVREDDAPVPEAN >gi|313656766|gb|GL545251.1| GENE 38 37899 - 38792 375 297 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1424 NR:ns ## KEGG: FI9785_1424 # Name: not_defined # Def: two-component system sensor histidine kinase (EC:2.7.3.-) # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 286 4 288 512 224 42.0 3e-57 MRQFQKQTKKKEAKNTSLVKKWVSLVALTITVSFLVFSVIIYSIVSQQFLNQERQVAETV VENFEHRLNSINKELQISNVVPALSPTTQRILNGGPTISAADNNTSSTENGFSDDILQNL TNQDISVVIFDKSGDIVFSNGKNQADFVTDITHKEEQLKLYLGKQSLTIYQPIRSASSHK IIGYIAVTDDMSSFNSMMEKVRAWMIGISIVATIIFILISYFIIRGIVWPLNAMSKVARQ INKDPNSDVRIPDLKRDDELGNWPKALTKCLIEFRAIFSNKSSLWGMFHMNCGHLLL >gi|313656766|gb|GL545251.1| GENE 39 38705 - 39466 748 253 aa, chain + ## HITS:1 COG:lin1415 KEGG:ns NR:ns ## COG: lin1415 COG0642 # Protein_GI_number: 16800483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 1 237 246 481 483 225 49.0 5e-59 MLDRVQGYIQQQKQFVGDVSHELRTPVAVIEGHLSLLERWGKNDPKILDESIDASLQEAE RMKHLIQEMLDLTRAEQIDIQYPNEVTNVSEVLTRVVSDLQLVHKDFTLRLNDDLNEDTM IQMYHSHFEQLLIILIDNAIKYSTNRNEVIISSSVEDGEAVVSVQDFGEGISESEKSKIF NRFYRVDKARTREKGGNGLGLSIAQKLTQSYHGQISVDSVLGSGSNFILRFPVLSKKEVK QLNKKKEKAQRGK >gi|313656766|gb|GL545251.1| GENE 40 39594 - 40463 895 289 aa, chain + ## HITS:1 COG:BS_yvfR KEGG:ns NR:ns ## COG: BS_yvfR COG1131 # Protein_GI_number: 16080462 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus subtilis # 1 285 2 292 301 189 37.0 7e-48 MTYAIEVNNVSKSFNKKPVLSNINFKIEAGEIVALLGKNGAGKTTLIRLLNDLITKDSGT VKIFEQVKPDRNLIGVMSQNSVRLDRVKVKEAVNLARSFYQNPLSFEKLVELAGIETLLD KFTDKLSGGQLKRVSFAIVMAGNPKLVFLDEPTAGMDVDARNEFWQKINGFKKLGITFLI TSHYPEELEKVAGRYLIINNHRLVFDGSLEQMKEQNQTAQVKFVSQLEKESFTKLPALAE ITENNHHYVLKVSNLNTFLPSFIKYIKQVENLEISQSNLESLMKKWMED >gi|313656766|gb|GL545251.1| GENE 41 40466 - 41203 647 245 aa, chain + ## HITS:1 COG:BS_yvfS KEGG:ns NR:ns ## COG: BS_yvfS COG0842 # Protein_GI_number: 16080461 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Bacillus subtilis # 16 195 15 196 245 87 25.0 2e-17 MKNFAYQLKINLKRFLLRNPFFFIFTISFPAIFYLIYTKVAISNAPAGWNKRFLVSMIVY GILVNSLTTLSRILSSDDKNGFKLFVKLSPASLTSYYANIFVVFEIMNLVAISAVALVGV FVNKVNLSFENWLVLLVAVPVLCIPFALIGVLISFVGDENAVGALANLLMFAIAILSGLW WPLSIMPDYLQKLGKIMLGHPVSELSLNLLLKQNLATSQLQTLFIWLIVLVLILGLVIKT KGRKA >gi|313656766|gb|GL545251.1| GENE 42 41274 - 42332 854 352 aa, chain + ## HITS:1 COG:BS_yocF KEGG:ns NR:ns ## COG: BS_yocF COG4585 # Protein_GI_number: 16078979 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 2 350 16 366 370 115 27.0 1e-25 MPYYYLLFLLVAFFIALPLKSLLDWVCVLALIPFAKFYRDSYGDEIPRYDWEIIGMIIIA ALWVINYQYYYNFIFAGFCIGFSEIKPHIFMKRVILYLTVITACAIFSVLKQGLDVNLAF GLIFTYSSVFFAHSFAISQRKRFALKQDYQRLSIIVKQSERDRIAGQLHDNLGQVFSTLA ISADLAEKLVDKNPALAKKQIQQIGKNARDNLSLVREIVADLRKQKLVQVLAVESENLEN AQFDLTTENQKQAFAWPNNIQNELSFIIREAIANAIRYSHGNLVKIDFNEDSNNYFVKIK DNGIGFKNKTNKHSSREHFGISGMQARVDKLKGSFAISDKNGVEISISLPKE >gi|313656766|gb|GL545251.1| GENE 43 42335 - 42940 719 201 aa, chain + ## HITS:1 COG:BS_yvfU KEGG:ns NR:ns ## COG: BS_yvfU COG2197 # Protein_GI_number: 16080459 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus subtilis # 1 201 1 200 200 175 48.0 6e-44 MRRLYLAEDQELLNSALKMLLDLEDDFEVVGTSLTGEDVAKQIMDLKVDVALLDIEMPKQ SGLEIAKELRQQNYPGKIIILTTFARANYFKEALAQKVDGYLLKDSPSDSLVKAIRAILE GNTVFDPKLVSGVLNEVDNPLTKRELEILKMLEQVATTKELAQRLFLSEGTVRNYISSIL SKTGTASRLEALNLARDKGWI >gi|313656766|gb|GL545251.1| GENE 44 43038 - 43925 1176 295 aa, chain + ## HITS:1 COG:SA0260 KEGG:ns NR:ns ## COG: SA0260 COG4975 # Protein_GI_number: 15925973 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Staphylococcus aureus N315 # 1 295 1 292 293 307 58.0 1e-83 MNTFAILIGLGPFVGWGLYPTIASKIGGKPENQILGSTIGTFIFALIVTLSLKIQLPVGM NFVFSVLSGIGWASAQIITFQSFTLIGSSRAMPISTALQLIVTSLWGVLALGDWPSSFDK TVGSLALILIICGAWLTVWTENKSHEDKQTLKKAILLLVIGQVGYWAYSAAPQAAHVSGL QAFLPQATGMVLVSVVYAIFLSLKHQRKSAIKEKISYKHIISGFFFAFAALTYLISAQPN MNGLATGFILSQTSVVLATLSGIWLLGQNKAKREMFVTVLGLVLIVVAASMTVLV >gi|313656766|gb|GL545251.1| GENE 45 43987 - 44910 819 307 aa, chain - ## HITS:1 COG:SPy0351 KEGG:ns NR:ns ## COG: SPy0351 COG0706 # Protein_GI_number: 15674505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Streptococcus pyogenes M1 GAS # 2 304 15 306 307 153 34.0 4e-37 MLAIILTGCAAYKTGANAAPKGGFFGLIYQFIGIPIRNIMLATENAIGGSNGAGWAIAII TAVIRFVLLPLMLSTSKKSTIQQEKVSRLQDQFKLIQDALKDRSLTPDKQMQISQLQQKV YRENNLSITGGIGCLPLLVQFPFMIGIYQAVAYSDALYKSNFFGVSLGKPSLLFAIVGAL FYLAQSLLMLRGVSEQQRAAMQSTVFISPLMTLFISMSTPGALGLYFLVGGIIALIQQVI VTYIILPRAKAKIDAELKEKPMKVVVTKEIIDNIISDNTNTGNSTSSTTAEDELRKRNAG KQKRNDK >gi|313656766|gb|GL545251.1| GENE 46 45010 - 45285 375 91 aa, chain - ## HITS:1 COG:PH0897 KEGG:ns NR:ns ## COG: PH0897 COG0068 # Protein_GI_number: 14590753 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Pyrococcus horikoshii # 1 78 1 78 773 64 41.0 5e-11 METREIHVYGLVQGVGFRWCTQILAKKFFLKGWVRNENDGSVTILIQGKDYILDKFIQEL PDAQGPTARIDKIEQKQLTNVAPLTRFTVKY >gi|313656766|gb|GL545251.1| GENE 47 45370 - 46137 178 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 59 252 47 240 255 73 28 4e-11 MQKITSTTNQTIKNLAKLNKKKYREQEGYYLIEGFHLVDEAFKSKLNFKYLLATPAAFEK LNIQYQLDLTDKRLVQINERVAKHLSATTNSQDVFMVLKINQPKHFTFNFGKWILLDSLA DPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHLPIIKADLLKTIEQFK ENYIPVYASVLDDEAKELPDFEKTKELALIIGNEANGVSDEAVNLADEKLFIPIKGQAES LNAAIAAGIMIYHFA >gi|313656766|gb|GL545251.1| GENE 48 46212 - 46562 426 116 aa, chain + ## HITS:1 COG:BH0508 KEGG:ns NR:ns ## COG: BH0508 COG1733 # Protein_GI_number: 15613071 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 21 114 7 101 102 82 42.0 2e-16 MSTTSEEKDGCQGCHNKYENCEHFINAFAFIGKKWNGLIISSLCSFTPMRFKDLANAVHA CSDRVLVERLKELEELKIVKRSVSDAGIITYKLTKKGAELKPVFDQVHEWADRWEV >gi|313656766|gb|GL545251.1| GENE 49 46860 - 47909 1236 349 aa, chain + ## HITS:1 COG:L0354 KEGG:ns NR:ns ## COG: L0354 COG0016 # Protein_GI_number: 15673911 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Lactococcus lactis # 1 344 1 344 346 435 58.0 1e-122 MDLFEKLAKLRDEGLAQIRKAENEKKLNDVRVTLVGKKGRLTEILHSMKEVAPENRREVG QKVNELRDLFNQKLDDAKKDLLEKLVAEKLKAEAVDVTLPGRKTRLGSKHVIRIIQDDLE RFFIGMGFQVVQGPEIETEHYNFEMLNLPKDHPARDMQATFFVDDGHLLRSQTSPVQART MEKHDFENGALKMISPGKVYRRDDDDATHSHQFAQMEGLVVDKNITMGDLKGTLEAVAKH VFGQDRETRLRPSYFPFTEPSVEMDVSCFNCDGKGCPVCKYTGWIEVLGAGMVHPNVIRN AGLDPEVYGGFAFGLGLDRFAILKYGVDDIRDFYTNDIRFLTQFRQEED >gi|313656766|gb|GL545251.1| GENE 50 47910 - 50318 2992 802 aa, chain + ## HITS:1 COG:SA0986_2 KEGG:ns NR:ns ## COG: SA0986_2 COG0072 # Protein_GI_number: 15926723 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Staphylococcus aureus N315 # 159 796 1 637 642 462 40.0 1e-130 MLVSYKWLQDFLKLDIDPNELAEKITRTGIEIASVDHPMEGLKKLVVGHVLECEMHPDSD HLHITQVDIGEDEPIQIVCGAPNVAAGEYVIVALHGARIAGNEKIKRGKIRGVVSNGMIC GLQEIGFSDSVVPQEFADGIFVFPDAIKPGTDVYEALGMDDYILDFDITPNRADTLSMEG AAYEVGAIVGQKPKIEDVVLKGDGSDWTKELSVSADKKLAPKFLMRKVSNVKIAPSPLWL QIRLWNAGIRPINNVVDATNYIMLLTGQPMHAYDANAFAGKCEVRLAKKGEKLTLLNENE LELDTEDIVITDGSKPVALAGVMGGLNSEVTSATTDVILESAVFDPALVRKAALRHDARS ESSARFEKGLNWDNTEKALNMAALLLRNHAEGTVNEGIIYAQNEEKPKCEITAKFAYFNK ILGTELSNEEILAIFDRLNFETKVSGDEVTVIVPSRRWDISIKADLVEEVGRIYGYDNIK STQPVLGQTHGGYNADETKVRHLRHLVEAQGLVETINYSLTSEELATLFEEKALAPVKVE WPLNSARTTMRQNLMASLVEAASYNFARKQNEVRIFEQGRVYDHESDEYNEHTHLAALYT GTAEETNWQHIDEKIDFYYVKGQVESLFDAVIKTSAKIEYKALKLPGMHPTRTAGIYIND QYVGFIGQIAPLLNLFDKNLRGKELYGYELNLDLILPLMDGETKSMPAPKYPSVERDMSL LVAENITSDEVANVIRENAGKYLVKLDVIDVYQGKHIEAGKKSLAYKLTFLNEKETLTDE VVTKAVSAVSEALTSQLEVEVR >gi|313656766|gb|GL545251.1| GENE 51 50405 - 50860 671 151 aa, chain + ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 1 151 9 159 160 150 58.0 6e-37 MTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAVEQRIAQV EQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGKISNDSPI AQALLGKHKGDTVSINTPGGSFDVVINDVKA >gi|313656766|gb|GL545251.1| GENE 52 50876 - 51079 120 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRKELIQIVSALFVMIFIGYAYDKNNMLKDKFQLLDLLRGLNRIDEEHKQILFDVFHQLT EFLKRYL >gi|313656766|gb|GL545251.1| GENE 53 51062 - 53476 1706 804 aa, chain - ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 14 804 12 828 883 175 24.0 3e-43 MNYQNKHINTILYLLSFFIPFAIFASYFTMHGMRILTVDLGQQYIDLLAFYKDHFFNPAT YNYSFTNGLGGSLIGTFFYYLASPFNILLLFFTKSQLPIAIYWLISLKVGTVGLTSYYYF QKNYQKIYSLAGSIAFALSGYIIAYNLNLMWLDSLILLPLLILQIRKTGQKNWLILVTFL LWVTNFYTGYMALVFGFFYFCIYLYNHPTNWQKKLFNYLAKSVIATLLAAFALIPTIYEI INNKNSSAVFNWGIQFTPYKMLGKFISGSYTFHEMQTGLPNVYITVLLFLVSLTYFLSNK FSLKERFSNALLILFLFVSCWFNPLVLFWHLGQFPTWYPARFSFVISFLLIEFALKVLSK QAKFSIAQLILIILVSVGLFTWLLTKNRFEFLDHNKVLISLVFAALLIIIVAAFPLRNIL VQGIILSLTIIATALNLSSSLNSISYQVNEDYSNFTENVANATTIIKRHDSSLYRLEKTF SRSDDDPFSDNYYGLSVFNSIANSKITNFISYQGLAHNSNAFINKFSTQVLDSLLGVKYT LQPYYGNDNVKTSQRMKYNNQLYRTDINSMAFGGDFKQISYAINQTALPLAYVSQRNWAT NYFENEPIKNQQSFYTAATGDKTNLFTTINLPNAQLENAKTNGNFNYQKKVFSQTATVSF TFTPQTNNSYYLQLPANLTGKVASLTINGENVDIEARYDQVRLINIANKQKGKKLVLTFT LLKNKANLANIVIWELNSKHLTDTLIKLKENQPTVKEIKAGTIETSTFTTSGSQTLRTSI PYDNNWVIYDNGKKLTTLNLQIPF >gi|313656766|gb|GL545251.1| GENE 54 53656 - 55719 1941 687 aa, chain + ## HITS:1 COG:BS_pbpA KEGG:ns NR:ns ## COG: BS_pbpA COG0768 # Protein_GI_number: 16079555 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Bacillus subtilis # 1 681 22 687 716 386 36.0 1e-107 MKIILGVIFILFAMLIGQLAYLQLIYGSRFHSEVQKTDDTVVTSAVPRGIMYDDKGRVLV GNKANNAITYTKGSSVTSKQIYNISTALSQYITISNEKPTALQLAAYYLGNSRNYAKEYA KLPKSQKYDSDGNELSNSTVYSTLEKQVIKNKRHYTSREKTAALIFNKISGAYSLSTIYI KNQNLTDKEVALVGEHLSELPGVGIGTDWERTYPNGSSIKTIIGSVSSEKAGLPSEKLQY YLAQGYSRNDRVGTSYLEKEYEALLKGSKTESKLTTKSNGKVTQTKTVYKGQAGASLILT LDSKYQAKVQKKLKSVYSSALSAGAAHYSSGAFAIALDPNTGAIKAVAGLDHNVKTNKIT DDALGIINQSFVMGSVVKGAQVAGGLINKVITPSSNTLPDTPIYLPGTPVKKSVYPIGTF SSLDAETALEVSSNIYMMQLTLRWLNAKYTPKTYIHMPSDAFDILRRNFAMFGLGQKTGI DLPGEISGIQGKSYNSSGQLLSGSVLDESYGNYDAYTPIQLAQYISTIANGGYRMQPYLV QSVGQTNSSGTKVSINYSKTPNVQFRIPWTSSELNVIKTGMYRVVHGTNAWGTAHTLKSV KPSISGKTGTAQTFYYDASASKKKNSSSDPIELINATFVGFAPSNKPKLAVVVVFPGLDP NLEGTYTLQVAKEMVEDYFKLNKYAEN >gi|313656766|gb|GL545251.1| GENE 55 55795 - 55944 267 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238854482|ref|ZP_04644821.1| ribosomal protein L33 [Lactobacillus jensenii 269-3] # 1 49 1 49 49 107 100 2e-21 MADNIILECTECGERDYLTKKNKRKHPERLALKKYCPRERKTTLHRETK >gi|313656766|gb|GL545251.1| GENE 56 55988 - 56545 499 185 aa, chain + ## HITS:1 COG:lin1373 KEGG:ns NR:ns ## COG: lin1373 COG0212 # Protein_GI_number: 16800441 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Listeria innocua # 6 156 4 155 179 93 38.0 2e-19 MLIMKKKELRQRQIHRLQEFAKKDRKVEEDILLQNKFLANSLLEGVKTIGVTCPLNFEID NQIIIEQARREGIKTYLAKSYPDKRMDFVYFDEQTQLKKSNFGILEVANPIEINNQLDLL LVPGLAFSKASHDRLGFGGGYYDRFLAEHNCKTVSLVNSVMLFDTPAWPIEETDRQVGEL IALTK >gi|313656766|gb|GL545251.1| GENE 57 56589 - 57278 804 229 aa, chain + ## HITS:1 COG:BH1421_1 KEGG:ns NR:ns ## COG: BH1421_1 COG0705 # Protein_GI_number: 15613984 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Bacillus halodurans # 5 180 179 349 349 127 40.0 2e-29 MNNPRLRKYYKTNAMTNTIFVVLVAMFIIETLRGGSDESAVLFKLGAQFNPAIIILGQWW RLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLAGVGGNLMTLALGSDN AVSAGASTALFGLFGAMIALGIANRTHEGMAYLGRQSFVLAVINLLFDINIPQIDTWGHV GGLLAGFLLTVILGDQNLRGYKLPIKILAGFALIGFVLISLRLGFIISE >gi|313656766|gb|GL545251.1| GENE 58 57278 - 57487 217 69 aa, chain + ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 66 1 66 67 70 60.0 5e-13 MKTLYDVQQLLKKFNILVYVGKRKWDIELMALELDNLHHAGVISQKDYLSAKLILRREHE IEEKNEKES >gi|313656766|gb|GL545251.1| GENE 59 57532 - 57933 366 133 aa, chain + ## HITS:1 COG:SA1364 KEGG:ns NR:ns ## COG: SA1364 COG0607 # Protein_GI_number: 15927114 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Staphylococcus aureus N315 # 31 132 27 128 128 98 49.0 2e-21 MNTFLLVIDAILLIIILSFLFSWLWNKYQAKRVGGALSNEEFRAGMRKAQIIDVRESAPF KRKHIDGARNIPMTMFKYQHGEIRKDLPVYLYSDASSITLRAARILQKDGYKKIFWLKDG LENWDGRTKASKY >gi|313656766|gb|GL545251.1| GENE 60 58023 - 58202 357 59 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1381 NR:ns ## KEGG: LGAS_1381 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 59 17 75 75 76 67.0 3e-13 MAKKFGAGFVTGMITTLGTIAAGVFTYKKKVLDPAEQEAKRIEQNRIRANRKSHSAHLG >gi|313656766|gb|GL545251.1| GENE 61 58271 - 59191 855 306 aa, chain + ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 2 303 3 304 314 239 42.0 3e-63 MQKIIVVVGPTAVGKTSLAIKLAQQVNGQIISGDSMQIYKEVSIGTAKATEEEQAAASHL LINQKSVFEEYSVKDFVADATKAIDKTIQMKKIPIICGGTGFYINALINKMQLGEPGEYE TSVEPKFEAFLAEHGSKELWQLLHEKDPQACKKIPVENTRRVLRALTVIDRTGKKFSEQQ TKITPRYDALLIGLNSDRQLVYSRINKRVDIMMTDGLLDEAKFVFENRAKEYQVLQAIGY KEFFPYFEGESDLTTCVNKLKQASRKYAKRQLTYFRNKLSVNWYDSLNDPAYFDKILTKV EQWQNV >gi|313656766|gb|GL545251.1| GENE 62 59184 - 60116 1150 310 aa, chain + ## HITS:1 COG:lin1335 KEGG:ns NR:ns ## COG: lin1335 COG4100 # Protein_GI_number: 16800403 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Listeria innocua # 7 309 3 306 408 296 50.0 4e-80 MYNYPKELRDLVKTVDQQIAPKFAELDEQVVYNQAKVLEAFKHANVAEADLKGTNGYGDD DTGRDKLEAIFAEVFQTEAALVRPQFVSGTHTLVTAMRGNLQAGDILTYLTGMPYDTLQT VIGLTPHKQGTLMQRGISFSYVPLKDNQVDYKAAKEVLLRDKPKMVAIQRSKGYSTRPSY NVEQIKEMIAFVKDILPETIVFIDNCYGEFSEKHEPTEYGADLMAGSLIKNGGGGIAKTG GYIVGKKELVENATYELLAPGCEDEGATLTNMQDFLQGFFIAPNTVVNAIKGMVFSSALL EKMGLEVAPK >gi|313656766|gb|GL545251.1| GENE 63 60170 - 60430 312 86 aa, chain + ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 1 81 326 406 412 110 61.0 4e-25 MVKFAKELQKNSPVDSFVEPVPYNMPGYEDKVVMAAGTFVSGSTIEFSADGPIREPYALY MQGGLTYAHVKIAVMNAVNELFFKKV >gi|313656766|gb|GL545251.1| GENE 64 60683 - 62020 1491 445 aa, chain + ## HITS:1 COG:BS_glnA KEGG:ns NR:ns ## COG: BS_glnA COG0174 # Protein_GI_number: 16078809 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Bacillus subtilis # 5 444 4 442 444 534 55.0 1e-151 MKKVYTEEEIRKIIRDQNVRFLRLCFTDINGTLKNVEVPLSQLDKVLANEIRFDGSSIDG YVRIEESDMVLYPDFSTWAVLPWGDNEGGKIGRLICSVHNTDGTPFAGDPRNNLKRVVNE MKEMGYSNFEIGFEAEFFLFKEDSEGNWTTKPTDQSSYFDMASEDEGAKCRRDIVETLEK IGFEVEAAHHEVGAGQQEIDFRFDDAVATADKVLTFKMVVKQIAKKHGLHATFMPKPVEG LPGSGMHTNMSLFKDGKNVFYDKDGEYKLSKTALYFLNGILSHARALTCVGNPTVNSYKR LIPGFEAPVYISWANKNRSPLVRIPDAEEIGTRLEMRSADPTANPYLLLAACLKAGLEGI KEAKMPMKPITSNVFEMSAEEKKERGIIALPSTLHNATKYFKEDKLIQDALGEHLTQSFI ESKELEWAQYTQSVSDWERNRYMNY >gi|313656766|gb|GL545251.1| GENE 65 62076 - 62831 462 251 aa, chain - ## HITS:1 COG:CT751 KEGG:ns NR:ns ## COG: CT751 COG0775 # Protein_GI_number: 15605484 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Chlamydia trachomatis # 20 220 9 216 289 63 27.0 2e-10 MEELSLMNFDSNPNAVLNPNHENLGCDFADKLVYPFVTDENFQAFLADKDYKIVATFETF ACNFSVYQVQYHNQTLSLVHPPLGASAAVQLLDWLIAYGVKEVLAIGSCGALTSGNEGDF FLPTKALRDEGTSFHYVAPSRYIILSSPLVTQVKEQLEKRSLPYTEVTTWTTDGFFRETK TKVEQHLAEGISVVEMECAAMAACCQLRNVQFAQILYSADSLANFEHDERNWGQKRQKDV MALACDILTAI >gi|313656766|gb|GL545251.1| GENE 66 63021 - 64103 1177 360 aa, chain + ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 4 355 1 347 350 270 45.0 2e-72 MKKMQIKAIVVSGLIGVMLLTLTGCRAKHSLSKNNYKNKYSIALITDISGVDDHSFTEAA WKGFEAFGQEHELSRGMGGYQYFQSNSEGDFVPNFNQAANAGFETLYGVGYALKEAVSSA AQKYPKKNFVIMDDVITGQKNVVSATFKSNESSYLAGVVAAYTTKTNTVGFIGGARSTVL DLFEAGFKQGVTDTAKKLGKKITILDQYVGDFTSTDKAKAIAQSMYAKKADILYQAAATA GNGVFQEAKNLNKTRSEKKKVWVIGVDSDQSAQGEYTNSRGKKDNCTLTSVLKGLGFAVK DIADKAYLGKFPGGKHLVYGLEHNGVSITKGNLSAKAWQESQEARSQIINGKITVRTSPK >gi|313656766|gb|GL545251.1| GENE 67 64238 - 65431 1077 397 aa, chain - ## HITS:1 COG:HI1038 KEGG:ns NR:ns ## COG: HI1038 COG1373 # Protein_GI_number: 16272972 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Haemophilus influenzae # 4 397 6 400 400 353 49.0 5e-97 MEPILRPLYLKRIEPMIDTEFIKVITGVRRSGKSYLLLMIRDQLLKRGISEKQIIYLNFE NPEYFDLLDYRKLYEYLKKKVDKSKKTYFFFDEIQEVHEWQKLINGLRVAFDSDIYITGS NASLLSGELASYLTGRYVQIPVLPLTFREYLKFKNYEQDDPARHFNDYLEYGGFPSVVLQ DNNQLKRDVLSGIYNSILLRDVAGRATIKNTEVLERVGLFLLGNAGQLISINKIANTLRS SGFKISNNTIEAYLNLLQDAFLFYKVPRYDIRGKELLKGQGKFYAVDLGFVRSQLRRERI NRGSKIENLVYLELLSRDYEVFVGKYDTKEIDFVAKNDSDTLYIQVTNQIPQNNTRETDN FLHLPTGYRKIIITNNWDDVGVIDGIEVVHITDFLTK >gi|313656766|gb|GL545251.1| GENE 68 65647 - 66825 1032 392 aa, chain + ## HITS:1 COG:L157472 KEGG:ns NR:ns ## COG: L157472 COG0477 # Protein_GI_number: 15672136 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 7 378 3 381 393 116 27.0 1e-25 MGKNQGKTVYTKDVILVMVASFFFMFSVMFVTPLINGYAISLGASSSFAGFVVGIMSVAS LFLRPIAGNITDIFSKYRLSLIGGILIAIGIIGYVITPNSELLLLFRLINGTGFVLCTVC MTTWLGALVPRSHVGQAMGFYGLMNALDMAIAPAIAIDVYHTIGYRNSFVLAAVASILMI IVIQFVENHALPKVKENKSKKKFKLIQKNAFPVAILTALFAIPYFITQADIVTYAEQKHL DIHVGFYFVIYAIVLLGLRIVLKNFFDTVRFGIWLYAAAASMFLYLLLLAIMTNDLMMGL AAIGMTVGYGIIYSVLQSTALLLAPLEEQGLASSTFYMGIDLGMSFGPIIAGFIDTYLPI QYFYLVQLVLVPLVLIVYFVYRKQLNGAIDQH >gi|313656766|gb|GL545251.1| GENE 69 66873 - 67382 419 169 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854496|ref|ZP_04644835.1| ## NR: gi|238854496|ref|ZP_04644835.1| hypothetical protein LACJE0001_0124 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] cytochrome b [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0124 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] cytochrome b [Lactobacillus jensenii 208-1] # 1 169 1 169 169 260 100.0 3e-68 MLLQFLYIIPCIIIVSTVLTRTYLATNTNLKVKDLLPGIKGSILFGLFNLILVISVKVLT SLTYTSLLIIDGVVSLIVMTLILIFVIKQHRNYSGIMFFSIGLQLIIWGNLANEDALLVL IPYLAILGFDLIYAIFYGFHKEGTWFWKCSLETKNAFFKQISPVIPFLY >gi|313656766|gb|GL545251.1| GENE 70 68027 - 68374 80 115 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0944 NR:ns ## KEGG: LDBND_0944 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 112 1 113 424 160 69.0 2e-38 MSSYNDCIKFSLDIQDPNITFNAHFFKLINGIKYKVFQATLIQPACPFCGSVNLIHNGHL QTNIRFITSNASSPVIIRLNKQRVLCRDCNTRSMAKSKLVNKYCSISNPASFCFN >gi|313656766|gb|GL545251.1| GENE 71 68385 - 69290 700 301 aa, chain + ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 286 130 420 428 167 35.0 2e-41 MTSIARENNLSVNTVQRILASCSHRFIDNYNYLPEHLAFDEFKGVDKKLHFICLDGQKHE VVQILRNRYKKSLLKYFGKFSPSARANVKTVSMDLNFYYQNIVRACFPNAEIIIDRFHMV QMLTRSFNSLRVLVMKSFDKRARQYQLLKLPWKLYLKSFVDLDKIHPHYNWHFKDYLTQE QVVMEGISCDPRLDNAYNLMQDFMAALKARDTNSLKEIINSKAEVGTLMHKTLLTFKHNL RAVLNGARFSYSNGCLEGFNRKIKQIERTAYGYSNYINLLTRIRLEENKVKEKEPSNLYI A >gi|313656766|gb|GL545251.1| GENE 72 69546 - 71924 2927 792 aa, chain - ## HITS:1 COG:no KEGG:LA2_07925 NR:ns ## KEGG: LA2_07925 # Name: not_defined # Def: x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) # Organism: L.amylovorus # Pathway: not_defined # 1 792 1 793 793 1216 72.0 0 MKYNQYALVKTNFDQKVKELTEINFLPSDYADYSFADLFKYLFKKAIVEAKTNASKEAKL AEFAVNNKTSLADFLKNNPSQITVDEFYCAALQLLGYHIVYDYEFDKPTDLMKKNALPIF GDINNKEDLISAFYLLLNTRAKNGQTYIDTMAGLGYFTQFYGQNKFMFFNGKSLPVFNTS KVIREVVYVESDLDTDQDGESDLLQVTIFRVPESNVGLKLPALYTADPYFGGIIDNVKRN HNVDENLSDASSWSNPQYKAMPTVPAKKPSDNTSQASEVAVHKAAYTLNEYMLARGFANV YAGAIGTRGSDGLRITGSPEETESAKEIIEWLHGDRIAYTDRSRQTEIKADWCNGNVGMT GRSYLGTLQIAIATTGVAGLKTVVSEAAISSWYDYYREHGLVVAPEACQGEDLDLLAETC QSNLWDAGSRLKVQAEYDQMQKDLLTKSDRTTGQYSDFWEARNYRHHTDGIKCSFISVHG LNDWNVKPKNVYKLWQKVSKLPIASHLFLHQGPHYNMNNLVSIDFTDLMNLWFVHELLNI ENGALTQWPKVMIQDNLEADTWHEEADWSGEGSEAVYYLNDDMSLNKNLPGHTAKSFTDL GGKEFKAAKIPESAWEYQFICGEEKWAKASLRFTSDEYAHPITINGRPRVRIRVSASLAK GQLSCALVELGKRKRLTATPKFIMPGGQELGYRFGVDTLQEFMPDKETKAKLICKGHMNL QNYQDMKRPSQIEAGQMVDLDFLLQPTYYKMPRGSRLALIVYSTDQAMTKRPLEEETYTI DLAHSALSFWQK >gi|313656766|gb|GL545251.1| GENE 73 71936 - 72292 340 118 aa, chain - ## HITS:1 COG:lin2520 KEGG:ns NR:ns ## COG: lin2520 COG1393 # Protein_GI_number: 16801582 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 116 2 116 117 104 45.0 4e-23 MKFYGYRRCSTSNKAQKYLDEHNVDYEFVDITQNPPTKAKFIDWFNKYQNRGLRYFFNTS GQHYRQMHLKDKLDSMTHEEAAELLSSDGKLIKRPLITDGENLSCGFKEDVYQKLWLK >gi|313656766|gb|GL545251.1| GENE 74 72829 - 73791 943 320 aa, chain + ## HITS:1 COG:lin2215 KEGG:ns NR:ns ## COG: lin2215 COG1482 # Protein_GI_number: 16801280 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Listeria innocua # 2 317 3 315 318 310 49.0 2e-84 MEAIFLEPYFRTKLWGGRKLETLFNYQIPDGKVGEAWIISGYRDDASHVINGKFKGMSLR DLYQKHPELFANPEEQEFPLLVKYLDANDNLSVQVHPDDEYAAIHENDSGKTESWYVLQA DPGSYLIYGHHAKSRQELADMIHEGRWDDLLRKVPVKKGDFFYVPAGTIHALTKGIVVIE TQQSSDVTYRLYDYDRVDKATGQKRELHTQKSIDVTTVPHKNPQLDIRKEKCGDATITML LNKPVSPHFYLAKIDLDGEVKFTMNWPYQLFSVISGSGKLCLPDKEYDLKLGDNFILPAG SYDFTFSGKISMITSAPIKE >gi|313656766|gb|GL545251.1| GENE 75 73805 - 74197 425 130 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_03740 NR:ns ## KEGG: LAC30SC_03740 # Name: not_defined # Def: integral membrane protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 129 1 129 130 173 62.0 2e-42 MIYVACGIIMMIVGFLWYVAPARRPDRLYGYISYLAQTNKDSFQFAQKMGARYNFLVGLV QFLLGLAIHFLGGDKYFIVWLLTFVIFIIIPFALTEKSLQKFLQSRHELPHDYVKPDDIK RQKVKGFRDL >gi|313656766|gb|GL545251.1| GENE 76 74197 - 74919 921 240 aa, chain + ## HITS:1 COG:lin1542 KEGG:ns NR:ns ## COG: lin1542 COG0745 # Protein_GI_number: 16800610 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 237 1 228 228 231 51.0 1e-60 MELNILMVEDDSSVAEMMELFFKKEQWNVDIARDGVEAVDKFKERPDYYDMITLDLNLPK KDGIQVAKEVRAISESIPIIMLTARDSESDQVLGLEIGADNYVTKPFSPIALIARIKALH RRAALENTDNDRKAKGDFDIVTNTLKISKIRREVYFLDKQIDGLTPKEFDLLYTMAQKPK QVFSRDKLLELVWGYEYYGEERTVDAHIKKLRQKLEEVGPQIIQTVWGVGYKFDDSQVNK >gi|313656766|gb|GL545251.1| GENE 77 75149 - 76381 1168 410 aa, chain + ## HITS:1 COG:BS_yclK KEGG:ns NR:ns ## COG: BS_yclK COG0642 # Protein_GI_number: 16077444 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 7 396 79 464 473 268 39.0 1e-71 MQSDDLQIRLFNGKNKQLYPKMGPKVKLPKDIWKSLKAGNEIRIKNDHEQRETYFSSKDA YTSVIIPWFDGSKMIGAVWIGARVKNVEQPIHLAKRNLISAFVVTLIVGLILSYLISYYS LVKIKRLSKATKKVAAGDLTVQIHHQDHDEIDDLASDFNSMIKSLKKSAEAVKEQERRRD QFMADAAHEMRTPLTTINGILEGLEYDAIPEDSKPKSYQLMHRETNRLIRLVNENLDYEK IRNNQISLIKTNFDATVPLNDLKTQLKTNAEKENDIIKLEVPEKLPVYADHDRFTQIMVN LVQNAIQFTQNGVITVSARRLKHGTEISVNDTGIGMSDEQIKYIFERFYKADPSRAKLGG KGESGLGLAIVLSLIKQHGGRISVNSIPNVGSTFIVTFFDKGFEEYTNED >gi|313656766|gb|GL545251.1| GENE 78 76755 - 79205 2882 816 aa, chain + ## HITS:1 COG:no KEGG:Apre_1411 NR:ns ## KEGG: Apre_1411 # Name: not_defined # Def: sugar-binding domain-containing protein # Organism: A.prevotii # Pathway: not_defined # 448 775 1614 1925 2126 129 34.0 6e-28 MLSKNNKKQYNLKHSNGQQHFSFRKTTVGLASVLLSTTLYLGVNSGFVVQAADNSITVGS TSNDKSEVDKSILQSAYDNAINIQKTDVKYINETDISKKNTYDDAINNAKTVIENESATS EDVTNASQKLLAAYNALTGINENTNKTQTLNSSSIENNTLSSNALETSLASTTLEQNNQI NPDYNGDFDSAGMHFESLPDYKISYTQDEYNQYTHPTGWQTIYNEDGTVYGIVYRYKMPK NDEEAEAEGLSQKLNVYDLVQQIIVTDPKTGAKYKGVARVDPATTENNKLIYVDGTEPDA DGRYKRNGHYVNVLSISGNRDGSLDQAQDVTYDTRESYDNNFYPDQKEWTVANDPKDHTK QPSDYADDEYGNGNYLKLSQFENYSKSGSSNEPRGDIYVGGNVQIVNSNTNEYYLALGVT TLKSAIDKKGFDNSVMRYILPIYFLGTNGEAAPAQETNKDELQKAVEEKPAVEKTASYEN ASEDAKKAYDDAVAEGQKVLDDANASQTAVDEAKAAIDKAKAELDGKETNKDELQKAVEE KPAVEKTASYENASEDAKKAYDDAVAEGQKVLDDANASQTAVDEAKAAIDKAKAELDGKE TQLDEILNLFDKTLVEDLNNLTDEEKNQVEANIRNANSNKPISSIVVKDNGQTIVNFENG AQKELTPDQTIIKKEVTNTEKKTEQTTPVNESSVNKDALKNEINNKDQIKSSTVYTNASS STKKAYDDALEKAQAVLADKNASQADVDTALANLNSASQKLDGKDSPETSSTTKNSINAK KLPQTGSQNETTRGWGLSLLALALVMLGFGKKRKKN >gi|313656766|gb|GL545251.1| GENE 79 79469 - 80647 1093 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 80 80931 - 83081 2220 716 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855688|ref|ZP_04645986.1| ## NR: gi|238855688|ref|ZP_04645986.1| putative surface protein [Lactobacillus jensenii 269-3] putative extracellular matrix-binding protein EbhB [Lactobacillus jensenii 208-1] putative gram-positive signal peptide, YSIRK family [Lactobacillus jensenii 1153] putative surface protein [Lactobacillus jensenii 269-3] putative extracellular matrix-binding protein EbhB [Lactobacillus jensenii 208-1] putative gram-positive signal peptide, YSIRK family [Lactobacillus jensenii 1153] # 1 716 1 716 716 1041 100.0 0 MFSKNNRKQYELKTANGQQHFSLRKTTLGLASVLLSTTLYLGGSNSLVQAASDTATNTES QTATSQSIENNNEEKVDKSQLQSAYDNALNVQKSDKYTNETDASKKSAFDSAVANAKKVL DNASATSEDVKNTISNLESAASQLTGTSQTNEAVNTTETKTSTNDTDTSAAMTTTTLNVS SLSKNSILSNNALTTSLVADTSNQTVKATNPGYSGSYDSGNIHIEDLPNFKISFTQDNYN GNTGWQVIYNQDGTINAVVYRYEIGKVTSLNSSDLAKQIVLYDPKTQYQYTIDSKLNAHQ DGRDGAQRCVQNSNSRQYTNFMDVLLYKPDRNEYWGLQPVDIVTKNSNNTYGSLKLDDYT KYAESATSDTKCEPITLDGKNIVNNSYAENYIILSTNNGTYVVNYLKDDAFKYMIPLYYV GVDTIAPTVNKDDAVSKVGGTTKSSIVYVNSKDALDPNKVISATDNGTPDADLIKTIELK GEDGSDITNISDIKNEVAYTVTYTVTDKAGNSSSFTLDKKYVVGTKVAPIVNSDTITVKK GDQLTGDSVAQMVYSNYATLKDQQQSFNFQFTDGGSTEKAGQYKGQISTGGITTDLTINV DDPELDQAKKDALHAIDQMKNLNDAQKQAAINAVNNATIASEAKTAQTNAETTNNNMGSL KSDDNLTNPIDENSSTFQNADKTAQDNYKKALSDAQQLTDISKGTSEGASSDPQHV >gi|313656766|gb|GL545251.1| GENE 81 83178 - 87608 6463 1476 aa, chain + ## HITS:1 COG:MA3293 KEGG:ns NR:ns ## COG: MA3293 COG0457 # Protein_GI_number: 20092108 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Methanosarcina acetivorans str.C2A # 35 382 212 559 739 68 21.0 1e-10 MEDLSDADKTAAKAYVDKATDISGVNTAKTDAQNLNDAKKAAKDAIDKMEDLSDADKTAA KANVDKATDISGVNTAKTDAQNLNDAKKAAKDAIDKMEDLSDADKTAAKANVDKATDISG VDTAKTDAQNLNDAKKAAKDAIDKMEDLSDADKEAAKTNVDKATDISGVDTAKTDAQNLN DAKKAAKDAIDKMEDLSDADKEAAKTNVDKATDISGVDTAKTDAQNLNDAKKAAKDAIDK MEDLSDADKEAAKTNVDKATDISGVDTAKTDAQNLNDAKKAAKDAIDKMEDLSDADKTAA KANVDKATDISGVNTAKTDAQNLNDAKKAAKDAIDKMEDLSDADKTAAKANVDKATDISG VDTAKTDAQNLNDAKKAAKKAINEMGNLNNAQKDTALKAVVNATPESAVVKVQNTAQTTD DNMSDLSTDANFKNADDIKNSSNYVNADKNLKDAYDKAVENAKALLDKINGSSTGDVSTE SAVVKAAKQAVDEALNALNGDSNLSKAKEAAKSAIDGMSNLSDADKTAAKANVDKATDIS GVNTAKTDAQNLNDAKKAAKDAIDEMGNLNKAQKQAAIDAVNNAQTKDAIQPIVDNATNL DGKMGDLKKAIEEANAKKSTTAYTQASDTKDFDKALNDADTLNSDNGDNEDADAVQKKID ALNNAKLDGEDQLANAKKNAIDAINKLNNLNKAQKQAAIDAVNNAQTKDAIQPIVDNATN LDGKMGDLKKAIEEANAKKSTTAYTQASDTKDFDKALNDANTLNSDNGDNEDADAVQKKI DALNNAKLDGEKQLEDAKNDAIDKINALNNLNKAQKDAAIEQVKNAQTKDAIQTIKGTAT TLDGKMGDLKKAIDEANAKKSTTAYTQASDTKDFDEALNNANTLDSDNGDNEDADAVQKK IDALNNAKLDGEDQLANAKKNAIDAINKLNNLNKAQKQAAIDAVNKANTIAEIKPIVDNA TNLDGKMGDLKKAIEEANAKKLTTAYTQASDTKNFDEALNNANTLNSDNGDNEDADAVQK KIDALNNAKLDGEDQLANAKKDAIDAINKLNNLNKAQKQAAIDAVNKANTIAEIKPIVDN ATNLDGKMGDLKKAIEEANAKKSTTAYTQASDTKDFDKALNDADTLNSDNGDNEDADAVQ KKIDALNNAKLDGEDQLANAKKDAIDAINKLNNLNKAQKQAAIDAVNKANTIAEIKPIVD NATNLDGKMGDLKKAIEEANAKKSTTAYTQASDTKDFDKALNDANTLNSDNGDNEDADAV QKKIDALNNAKLDGEKVALQKAIEQANAKIDGTNPDYVYYNSDSESQSALKDAVAKAKTL LEQRDASDDDFKVAREAIETAIKALNGQLTDKSALQKAASQSNDVHKSVVFLNASEAAKK AYEDALANAQTVLADENASQEDVDAALAKLNAALNKLDGKEAPAKPTVKKNTVKLGTNAD RLPQTGSHKSVASELGLGILALGLTALGLAKKRKED >gi|313656766|gb|GL545251.1| GENE 82 87792 - 89057 1568 421 aa, chain + ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 2 410 4 406 408 421 54.0 1e-117 MTKKFTPILLGSDINVYGMARSFHEAYGIKVEAWAGSPLAATKYSKIVDVKLYPGFSEDP EFMNVMKKKIEEYKRHDEPVILIACGDGYAELLAKHKAELSEAFIVPYIEYDLLKKLISK EGFYEYAEKYGLPYPGTKIITIDEYKAGNYLTMPFNYPVELKPEDPVSWLDCQFEGRKKT FTLKSEAELKDIVTKIYTHGYKADLILQDFIPGDDSHMRVLNAYVDKHHKVKMMCLGHPL LEDPTPQSIGNYMAILPEYNQDLYDQVQSFLEKINYTGMANFDIKYDERDGKFKFFEINL RQGRSSFYVTMNNCNLAKWYVDDYVEDDLTNRETVYANKDGKDHVLWLGVPKKIFTEYAV DNEAKREASSLIKAGKYGTTVFYEHDRSFMRLLLMKYMFHNYVGRFKKYFEVNKGQYFEK K >gi|313656766|gb|GL545251.1| GENE 83 89109 - 91307 1442 732 aa, chain - ## HITS:1 COG:lin0927 KEGG:ns NR:ns ## COG: lin0927 COG1368 # Protein_GI_number: 16799998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Listeria innocua # 10 655 10 642 653 559 47.0 1e-159 MRKIQHFNFTWIQKRTGFLALLTILYTIKYIFAGYVDFNLGLSDPYQHFIMWTSPIATSI LLLSLALYIKKPIASYVTMLVIDFVNTALLFANVIYYRQFTDFLTVKTIANTSKVSQGLG KSAVSLLHFDDIFIWLDLIVIILLLIFKIIKIDQKKYSFSSSFAVTSFSCFLLGLNFFLS ETSRPRLLRNTFDRVYVVKYLGITSYTAYDSIKSLQSGTNSKVANAEELNKILAFTKKNY ASPNIQYFGKAKGKNVIIIHLESFQQFLINLKINGKEVTPFLNSLYKDKNTLSYENFYNQ VGLGRTSDAENMLETGTYGISDGSLFTSLGSNNTFQAAPQILRQSGYTSAVFHGNIATFW NRNDVYKNLGYNYFFYKNYYSNNKDDSSGYGIKDKLLFAESIKYLEQMQQPFYTKFITVT NHIPFDLDDEDKDPDFKTTNTSDATVNGYFLTAHYLDSALKEFFDYLKKSGLYKNSMIII YGDHYGLSSSDYNAISSILGKTSDWSSYDTAQFQKVPFMIHMDGLKGSVKQEYAGEIDVL PTILHLLGVNNKNYIQFGTDMLSKYHKQIVVFRNGTIVTPKYTIINGKASNGNVYNTKTG ELIKSFTIKQKKELQKLVKYERESLHYSDTLNNRNLLRFYTPKGFIPATPTQFNYITEFQ QMINLREKLGKASTSLYSQHKGTTTNLYQTDAPELKDRTNEITTIPENISGSASSTSSSV TSPSNQSSSSHK >gi|313656766|gb|GL545251.1| GENE 84 91438 - 92016 326 192 aa, chain + ## HITS:1 COG:CAC0829 KEGG:ns NR:ns ## COG: CAC0829 COG4767 # Protein_GI_number: 15894116 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Clostridium acetobutylicum # 65 183 15 134 308 60 37.0 2e-09 MMIFLGPLYSFLAKHLATNINHFALVKLVIISLDKTIFYFLLFAFLRLLWLLLIRRRRSH LSESLVWVFTFYVMFLLAVTTFRESYFPWQLTFDWNRPLSDINLIFFKETWKLTKGTTLF DFVYNAFGNILCFIPFGFLFPNLIKKKKCILQTVFAGMVLSLFIETMQFGLNTGVSDIDD VFLILLELFLDI >gi|313656766|gb|GL545251.1| GENE 85 92131 - 93468 1911 445 aa, chain + ## HITS:1 COG:L0012 KEGG:ns NR:ns ## COG: L0012 COG0166 # Protein_GI_number: 15674150 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Lactococcus lactis # 1 445 1 448 448 595 65.0 1e-170 MSLVHFDSSKLAPFVHDNELKEMQAMVNAADSELRQGTGAGSDFRGWLDLPVNYDKDEFA RIKKAAKKIQSDSEVLIGIGIGGSYLGAQAAIEFLNSAFYGKEDNGYPTVVFCGNSISGS YLADLINWLGDKDFSINVISKSGTTTEPSIAFRILKAKLIEKYGKEEANKRIYATTDRAK GALKTEADAEGYEEFVVPDDLGGRFSVLSAVGLLPIAVAGGDIDKLMEGAAKAREDYTDT DVTKDSPYQYAALRNILYRKGYTTELLENYEPTLRMFGEWWKQLMGESEGKDQKGIYPSS ANFSTDLHSLGQYIQEGRRNLMETVVRVENPRFDVEIPSDSENLDQLNFLAGKTMNYVND RAYEGVVLAHTDGGVPVMTVNIPDQKELTLGYLIYFFELAVGISGYLNGINPFNQPGVEA YKRNMFGLLNKPGYEDLHDDLTKRL >gi|313656766|gb|GL545251.1| GENE 86 93584 - 94939 1131 451 aa, chain + ## HITS:1 COG:SPy0570 KEGG:ns NR:ns ## COG: SPy0570 COG0477 # Protein_GI_number: 15674660 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 11 451 23 452 455 251 35.0 2e-66 MTAILMVAVLAFLGILTETSLNVTFPEMMKDFKVSLDTIQWTTTGYLLAIAILMISSSYL NKRFTARAIFLFASGSFLIGSLLCLFSSNFEIMLLGRIISSCGAGLATPLMFNLVTELMP REKIGFYMGLAGLVLAMAPSLGPSFGGIIAYYFNWRVIFSISSVLAIIVILIGLRVVGKY HEVSHPSFDWVRYIVISLFMVDFTLMINHLSSGFDLQFFLYLVFAILSMGLFIHLSKNSQ KTLINLAIFKDAAFVYAMLAFFLIQFINIGVSFVLPNYVQIVNGASTLAGGLMLLPGSVI FSLMTPYFGHLYDEKGAKLPLYLGGSLLLVAIILLALFGMVLNPWIICLIYSIMACGMRM AFNNTLTVGIESSPKKLHADATAIMQTGQQFAGSIGTSVLATIISFSQSTRHGSKAILMA QGCEVAFIFVTFIAILIMLCYWQLFTKVDKK >gi|313656766|gb|GL545251.1| GENE 87 95023 - 95262 285 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850887|ref|ZP_05556276.1| ## NR: gi|256850887|ref|ZP_05556276.1| predicted protein [Lactobacillus jensenii 27-2-CHN] predicted protein [Lactobacillus jensenii 115-3-CHN] predicted protein [Lactobacillus jensenii 27-2-CHN] predicted protein [Lactobacillus jensenii 115-3-CHN] # 1 79 12 90 90 132 94.0 6e-30 MENKMTHSASIINARLAWKIVWVVVYGITAFYTYLSFTDMAHMMKWMMYAMAWMAGGMLA EAIVGLVYHCCGKDGNGCH >gi|313656766|gb|GL545251.1| GENE 88 95676 - 96143 419 155 aa, chain + ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 10 137 10 137 328 101 42.0 4e-22 MSDFFRTQYLIESMVSERIVPGVNYAFIKNNQVFKATIGFSEIYPETKQLSPYSEYDLAS LTKVLGTTNVFLKLYQEGRLNFNEPLGDFLPEFKDKPVRLFHLLTHTSGIRGWIENRDQL PASDLLEAIKNYQLLMNLKQKCAMQTLILFCWDWS >gi|313656766|gb|GL545251.1| GENE 89 96098 - 96682 447 194 aa, chain + ## HITS:1 COG:lin2030 KEGG:ns NR:ns ## COG: lin2030 COG1680 # Protein_GI_number: 16801096 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 3 192 144 328 335 113 38.0 2e-25 MRYADTNFILLGLVLEQIYHKSVQDIIMDEVVKPAGLKYTTFKANKADCVPTAVVDGQLL QGVVHDPKARVLGKRCGSAGLFSNIDDLIKLTFGYLGRNNLLPFSQELTSEIFGIKSNSK KVHPRSWGWDLVFDPEDQHPLIFHTGFTGTFILIDRQKQTAMIVLTNRVHPTGHNQIFLT MRQRIVDSFLAENK >gi|313656766|gb|GL545251.1| GENE 90 96712 - 98067 1404 451 aa, chain - ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 1 440 1 438 449 441 48.0 1e-123 MNLKSGIAKLSGKTSHWVLHNIFKGGTSFPGKLAMRIDPNILANLAKDYETIIVTGTNGK TMTTALIVNALKEKYGEILTNPSGSNMQQGIITAFLSHKAKRHGRKLAVLEVDEANVKRV TELLHPKAYVLTNIFRDQMDRYGEIYTTYDKIIDGIKLAPDAVVIANGDASIFSSVELPN KKVFYGFETKADEMTNDFRASVNTDGVLCPRCNHIIHYHAISYANLGDFFCPNCGFKRPN LSYKLKEITERTPNSIKFRIENTEFSIGIGGTYNIYNALAAFSVAREFDVSEDEIASAFA KNKRIFGRQELISYADKEINLILVKNPVGLNEVLSLLNTEKSDYTLATLLNAHHADGIDT SWIWDADYEGLDKTKVKQILVGGERHHDMGFRLEVAGFDPGTMEVTPDDNTLLTRIKEAP TKKVYILATYTAMLALRSTLYDQKILKNKIN >gi|313656766|gb|GL545251.1| GENE 91 98235 - 98810 616 191 aa, chain + ## HITS:1 COG:L184871 KEGG:ns NR:ns ## COG: L184871 COG1435 # Protein_GI_number: 15672575 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Lactococcus lactis # 1 185 11 187 189 239 62.0 3e-63 MSSGKTIEILKVAHNYQMQGRKIALMTSGKDDRSGKGIIASRVGLNSKATPIEDDMNIFE YVKKQNEKDIANGDGAIACVLIDEAQFLYKHHVLECAKIVDDLHIPVMTFGLKNDFQNNL FEGSKYLLLYADKIEEMKTICHYCGRKATMVIRVQDGKPVYEGAQLQIGGDESYYPVCRF HYNYPGQKRED >gi|313656766|gb|GL545251.1| GENE 92 98839 - 99927 1463 362 aa, chain + ## HITS:1 COG:L0373 KEGG:ns NR:ns ## COG: L0373 COG0216 # Protein_GI_number: 15672577 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Lactococcus lactis # 7 357 4 355 357 406 61.0 1e-113 MDKVMAQLEGLVARYEEIQELMADPEVINDTKRYMEISKEEADMREVVQKYRKYQEDQKT ISDNKEIIESESDADLVEMAKEENSDLEKEVADLEEEIKILMLPKDPNDDKDIIMEIRGA AGGDEASLFAGDLLRMYEKYAETQGWKISVIDEETTEVGGYKHVAIMITGDKVYSKLKYE NGAHRVQRIPVTESQGRVHTSTATVAVMPEYEQVDIDLDPKDIRVDVYRSSGAGGQHINK TSSAVRMTHLPTGIVVAMQDQRSQQQNRAKAMEILKSRVYDYYESQNQASYDEKRKNAVG TGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEIISALIVHYQTKQLEELAED NA >gi|313656766|gb|GL545251.1| GENE 93 99920 - 100762 312 280 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 44 277 60 289 294 124 36 1e-26 MPKTLKQLVQLGQEKAPEASVDDLTYLVSERANLTPSEFKLKQDTEVSSELEKQLQKDFK KLARNVSPQYILGYAWFLGYKIMVQRGVLIPRFETEELVEWALKHLHDGMKILDLGTGSG AIMVALAKEAAKKDIKDLTLYASDISDSALRICEENFLKFALDVTVRKANVLIGLEKFDL IISNPPYIKPEEKNLMDSNVLQNEPEEALFGGEDGLEFYRRFAKQIRKHLTSQGEFFLEF GFSEKDELAKLFATELPDFDIEFKDDLAGKPRMVYGKWQK >gi|313656766|gb|GL545251.1| GENE 94 100762 - 101718 1199 318 aa, chain + ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 13 313 20 325 345 247 44.0 2e-65 METQILKKDQIDQAVEFLKKGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLI VTVSDENMMKRYAKFVPERAEKLIKHFWPGPLTLLLLVKEGSLPDAVTGGLKTAAFRCPN DELTHELISKLGYPIVGPSANTSTKPSPTTAEHVYHDLKGKISAIIDGGATEVGLESTII DLSVETPIVLRPGQITPEELSEVLGEKVLINTGKVSDKAIPKAPGMKYRHYAPNAPVWVV DDTNDFGKIEFKSDTAVAALDSVLEKLDLPAENKFSLGKDLKDADHNLFSALRFFDDEDE IKTIYVQGFDEGEKAWLT >gi|313656766|gb|GL545251.1| GENE 95 101846 - 102475 895 209 aa, chain + ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 296 69.0 1e-80 MGKFTVLNHPLIQHKLTIIRKKDTGTNEFRQIVGEIGGLMVYEMTRDLPLKNVEIETPIG KTTQKELAGKKLVIVPILRAGLGMVDGVLQMIPSAKVGHIGMYRDEETLKPHEYFFKMPQ DIEERDVIIVDPMLATGGSANMAIEALKKRGAKNIRLAVLVAAPEGVKNIQEAHPDVDIY AAAEDEKLMDNGYIFPGLGDAGDRLFGTK >gi|313656766|gb|GL545251.1| GENE 96 102608 - 103324 634 238 aa, chain + ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 2 238 3 237 238 162 41.0 6e-40 MEKPEILKLFGLTFNVSNILGGTLVALIVFGMCFWLARKVELRPGKKQNVLEYIIDFTDG IVKSNVEDEDAQKHLSLYAFVLFLFIWWLNQLGLFLEVKDMSGLMLLKSPTADPTITMTM AMMTLLLSYNFGVQKFGTFGYLKNYARPLPFFLPINVMEEFTNFLTLSLRLYGNIYAGEV LLTLIGNDFAHSFGIGTIILSAPLTIIWQGFSVFIGSIQAYVFVTLSMVYIGKKVTQE >gi|313656766|gb|GL545251.1| GENE 97 103346 - 103561 389 71 aa, chain + ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 1 68 1 68 70 59 57.0 1e-09 MKFLAVAIAAGLAALAASYGNGKVISTTIQGMARQPESASELRSTMFIGVGLIEAVPILA VVIAFLIFFLG >gi|313656766|gb|GL545251.1| GENE 98 103599 - 104108 712 169 aa, chain + ## HITS:1 COG:SP1512 KEGG:ns NR:ns ## COG: SP1512 COG0711 # Protein_GI_number: 15901359 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Streptococcus pneumoniae TIGR4 # 15 169 9 163 164 97 38.0 1e-20 MTNILFAAEKSDLYLGDTIYYLVLFAILLLAVKHFAWGPVTDMMEKRRQQVIEDIDKAAD ERKKAEILAGEREEQLKSSRQEATQILSTAKTNAEAAGKDILNQANEEAKNIREKAKADA IQAKSDALNEAQAQVADISVQIAEKVIAKNLSAADQKDLVDQFIKGLNK >gi|313656766|gb|GL545251.1| GENE 99 104108 - 104656 643 182 aa, chain + ## HITS:1 COG:BS_atpH KEGG:ns NR:ns ## COG: BS_atpH COG0712 # Protein_GI_number: 16080737 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Bacillus subtilis # 3 178 1 176 181 92 32.0 4e-19 MALSREEISARYGAALFGYCQDTNSLDNVYGELQVLKSAVLDNPRLSEVLSSPVYSIEEK KQLLKNISADFSQEVQQFLELLLDYGRFAVLPDIVDQFNMRYNKLNNIAFGKVISAVKLD DDQLQKLGQAYAKKYNLKELKLTNQVNPSIIGGVILEVEDYIIDGSVKTKLKKIRAQLVE NI >gi|313656766|gb|GL545251.1| GENE 100 104671 - 106185 1674 504 aa, chain + ## HITS:1 COG:SPy0758 KEGG:ns NR:ns ## COG: SPy0758 COG0056 # Protein_GI_number: 15674806 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 496 1 496 502 767 77.0 0 MSIKAEEISSLIKKQLEHFDDKLDIDEVGVITYVGDGIARAHGLNNVLANELLEFENGSY GIAQNLETNDVGIIILGKYDNIREGDRVKRTGRIMEVPVGEALIGRVVNPLGQPVDGLGE IKTDKTRPIESKAPGVMDRQSVNQPLQTGIKAIDALVPIGRGQRELIIGDRKTGKTSLAI DTILNQKGQDVICIYVAIGQKESTVRSQVETLKRYGAMDYTIVVEAGPSAPAPLLYIAPY AGTAMGEEFMYNGKDVLIVFDDLSKQAVAYRELSLLIRRPPGREAYPGDVFYIHSRLLER SAKLSDKLGGGSLTALPFIQTEAGDISAYIPTNVISITDGQIFLQSDLFFAGTRPAIDAG ASVSRVGGSAQIKAMKKVAGTLRVDLASFRELESFAQFGSDLDQATQAKLNRGRRIVEVL KQPLHEPLPVEKQVLILYALTHGFLDSIPVEDVARYERELDSNFESSHSDLLKTIRETGD LPDEDEMNEAIKSFNEGFTPTSKN >gi|313656766|gb|GL545251.1| GENE 101 106196 - 107158 1247 320 aa, chain + ## HITS:1 COG:SP1509 KEGG:ns NR:ns ## COG: SP1509 COG0224 # Protein_GI_number: 15901356 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 320 1 292 292 254 44.0 2e-67 MPASLLELKKKIASVKQTGKITQAMRMVSAAKLNQTEKKDKGYTLYNDTLKKTVSHLMSA QIVDHLKSENVPVNSKNVAKLDYTNVFGLGIVSDLIQARSEVKSTGYLVITGDRGLVGSY NSTVIKNMMGLFEDSKAENKDVKVLAVGRVGAQFFKKNNMNVVYENSGISDVPSFNEVLP IVSTAIKMYLNGVYDELYVCYTHHVNSLSSAFRVEKMLPISDLDIGSEEAEAHEKLEYDI DPDIDTALKSLLPQFARSTIYGAILDAKTAEHASSMTAMQSASDNASDLVSRLTTQMNRA RQAQITTELSEIIGGANALE >gi|313656766|gb|GL545251.1| GENE 102 107180 - 108622 1816 480 aa, chain + ## HITS:1 COG:SP1508 KEGG:ns NR:ns ## COG: SP1508 COG0055 # Protein_GI_number: 15901355 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 465 1 467 468 724 80.0 0 MSEGEIVQVVGPVVDVQFPIDKNLPDINNALHVIKSDDETITLEVTLELGDGVLRTISME STDGLRRGMKVVDTGAPISVPVGDDTLGRVFNVLGDPIDNGPKFPADHRRDSIHKEAPKY SELTTSREILETGIKVIDLLEPYVRGGKVGLFGGAGVGKTTIIQELIHNIAQEHGGISVF TGVGERTREGNDLYFEMKASGVLDKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQ DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQA VYVPADDYTDPAPATTFAHLDATTNLERSLVEQGIYPAVDPLESTSSALDPEVVGEEHYE VATRVQHVLQRYHELQDIISVLGMDELSDEEKMIVARARKIQFFLSQNFFVAETFTGVPG SYVPVKATIKGFKLILDGHLDDLPEDAFRGVGPIEDVIKKAEKMGVTPSDPEAKALIAEK >gi|313656766|gb|GL545251.1| GENE 103 108634 - 109077 571 147 aa, chain + ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 8 142 4 137 138 120 48.0 1e-27 MAESEKLMTVNVVTPDGLIYSHKSSIVVMRAVDGERAVMYNHTPFLTPLVIGDVRVKRGK QLNNRVDHIAVNGGYIDFSNNVATIIADSAERARNIDLSRAEAAKKRAEQHLKEAKASHN ESSYERASVALKRAVNRINVHQSTQQK >gi|313656766|gb|GL545251.1| GENE 104 109130 - 109366 232 78 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0644 NR:ns ## KEGG: LDBND_0644 # Name: not_defined # Def: membrane protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 76 1 76 76 71 56.0 1e-11 MQQLGLHALLSLFIYFVTTALAFQAIKCLDLSKLFKIKKIFEEQILYIFLALGLGYLVGQ FFIAFMDYSLTLTNLFNN >gi|313656766|gb|GL545251.1| GENE 105 109447 - 110436 1283 329 aa, chain + ## HITS:1 COG:BH3739 KEGG:ns NR:ns ## COG: BH3739 COG1077 # Protein_GI_number: 15616301 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 2 329 3 330 334 396 62.0 1e-110 MAKDIGIDLGTANVLINVSGKGIVLNEPSVVAVNTENNEVVAVGTEAYEMVGRTPGNIRV IRPLKNGVIADFDITEAMLSYFIEKLNVKGFMAKPNILICAPTGVTSIEQKAIIQAAEKS GGGRVYLDFEPKVAAVGAGLDIFKPQGNMVIDIGGGTTDIAVLSMGEIVTAKSLRWAGDK MNQAIVSYIKNNRNLLIGSRTAEQIKIEIGSAFEPDPEKKITVRGRDMVAGLPKQTTISA IEVQESLHDGLMSIVRATKEVLEQTPPELSADIIDRGIMLTGGGALLANLDKLISYYLQV PVLIADSPLEAVALGTGALLKNIEKHQGR >gi|313656766|gb|GL545251.1| GENE 106 110545 - 110733 156 62 aa, chain + ## HITS:1 COG:L122982 KEGG:ns NR:ns ## COG: L122982 COG0759 # Protein_GI_number: 15673654 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 52 34 86 88 67 60.0 8e-12 MIDSLRKHGPLKGLIMGIARIIRCNPFVRGGVDPVPDHFTLRRNPHPENYEDPIIAKKFH SK >gi|313656766|gb|GL545251.1| GENE 107 110742 - 110918 207 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313471890|ref|ZP_07812382.1| ## NR: gi|313471890|ref|ZP_07812382.1| conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 1153] # 1 58 1 58 58 86 100.0 5e-16 MSKKLENISIEVNELKGKSIPSWEVIIPNKKLLVSLKKWKVVIAQLPIRAIMFFFQRV >gi|313656766|gb|GL545251.1| GENE 108 110988 - 112178 1155 396 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 384 4 387 414 284 42.0 2e-76 MAKLQNKTDIYDRVAWGIVGAIALLAIISFYAIWIAASNDSTLGTPFKAVVGQAVWYILS IAIVIVIMQFDADQLFKIAPYAYGLGIVLLILVLIFYDRSSFVNNGAKSWFKLGSLTFQP SEVMKPAFILMLARVVKDHNEYYGHTWRNDWILLGKIFGWLAPIAVLLKLQNDFGTMLVF FAIVGGVILVSGITWKIILPTFIVIAVLGTTTILLVTTNWGQAFLGHFFKAYQFERINSW LDPSGDTSSGAYQLWQSMKAIGSGQIFGSGFGKSSVYVPVRSSDMVFSVLGESFGFVGGV VLIMIYLYLIIQMVMISFDTRNAFYSYISTGIIMMILFHVFENVGMSIDLLPLTGIPLSF VSQGGSALIGNMIGIGLILSMKFHNKDYIFSTAGDF >gi|313656766|gb|GL545251.1| GENE 109 112429 - 113607 1093 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 110 113832 - 114380 463 182 aa, chain + ## HITS:1 COG:MYPU_3960 KEGG:ns NR:ns ## COG: MYPU_3960 COG2189 # Protein_GI_number: 15828867 # Func_class: L Replication, recombination and repair # Function: Adenine specific DNA methylase Mod # Organism: Mycoplasma pulmonis # 22 170 18 162 573 99 42.0 4e-21 MVVESKILEQIKLTLIKIGGGKYFTVDGVLKRNAVINDLDRYDKDLMTALLNDELIHKNF TTKIADIEIFEVNKFIDMLRYKEYWANSFTKFNNKIGLAVGDKYIDDSSDVVLNFPYKDC VLKAGMTKEDVEDSDDANELFLNETIAKSEIDELLEPKILVNALKYDEDGSKKLKILLIK II >gi|313656766|gb|GL545251.1| GENE 111 114533 - 115057 247 174 aa, chain + ## HITS:1 COG:HI1056 KEGG:ns NR:ns ## COG: HI1056 COG2189 # Protein_GI_number: 16272988 # Func_class: L Replication, recombination and repair # Function: Adenine specific DNA methylase Mod # Organism: Haemophilus influenzae # 1 93 174 265 629 65 37.0 6e-11 MKNRIDVARKLLKEDGLIFIEIDHLEEAYLKVLLDMSFGIQNYVATISVKSNSISGSKTS HKGKTILKNYDSILVYKNGAENIKINPQYTPKEKWDTHYSFYLRKNSKNELEKASLKDLL IEKNILERGESIKANIWDNKEFQKFANENKDNIFREVNSIPDDLKEKALRIKIR >gi|313656766|gb|GL545251.1| GENE 112 115084 - 115818 552 244 aa, chain + ## HITS:1 COG:HI1056 KEGG:ns NR:ns ## COG: HI1056 COG2189 # Protein_GI_number: 16272988 # Func_class: L Replication, recombination and repair # Function: Adenine specific DNA methylase Mod # Organism: Haemophilus influenzae # 27 239 408 621 629 172 45.0 8e-43 MYALNGTRYSPLSSSYKNINGESVPAQLLGDLWTDIDYQNTQNQGGVSFTNAKKPEQLLK RIINLCTNEGDIVLDCFMGSATTQAVALKLNRQFIGVEQMDYINTISVPRLQKVIEGEQG GISKNKDVKWQGGGSFIYAELMEKSQGYLKDIKEATDVDELMTVYNRMKANSDINFRVDL DKFEKEFQSGELTTLDDLKKELILIIDKNQLYYNYSNIDDETVRSLISDSDYKFNKSFYA TRGE >gi|313656766|gb|GL545251.1| GENE 113 115824 - 118349 1750 841 aa, chain + ## HITS:1 COG:MYPU_3950 KEGG:ns NR:ns ## COG: MYPU_3950 COG3421 # Protein_GI_number: 15828866 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycoplasma pulmonis # 39 823 49 837 897 308 33.0 3e-83 MVNKSKNSNIKPLPFLEKVHEGISRIDYVPYDYQYINESLKHNLRPYQLSALFSLDWVQK HDEVQQHNHLMFNMATGSGKTDVMASNILYLFKEYGYTNFLFVTNSNAIVNKTKENFLNS NSSKYLFAPTINIDGQLVDIKQVKNFPLNQQANAIYIKLTTIQSLSNEINYSKENGLTIE DLENYKIVILADEAHHFNAQTKSQKQKETSWEEVLDRVRNANKLNIQLEYTATIDIDKDE VYEKYKNKIIYKYDLNRFMDDGYSKKVFRLEANNDNNQKLLNAILLSQYRKRIAHKLNIS DFKPVVLVKSNRIKTSEKVKDSFLQMMEDLSSEFLAKFISENAEINKNSMALSKAYEYWK TQDLSKAVEELQRDFNIKTTINVNEGGTKGIVSEEADFKKLNSLEDINNPFRIIFAVAKL TEGWDVLNLFDIVRISEEKESKTIKQTNAEAQLIGRGARYYPFVYKGEKSYTRRFDTGAD STFENQLLESLYYHTINDSGYIKNLNKSFDNMNLIANQDGNYQVFSADVKKTFLKSNFYK NGNIYYNKTVQVPDSEYRDLKAYGIDNQTMIINYSIATTESSFKQAYTSLSENKVKLVNV VDFSNLSDYRLVKKAIAKNTFFRFSEMKQYLPELTSIREFITSPNWLGNISILARVPNEY TLNLDDKLKVISIALKQIQAQVVKNYRKEKGTNIFVPISVKETVKDYSKLVPQRSNKTIS EIILPKDMSAKEWYPYSTAIVDQLEMSFINLLDTWVNKLKEKYKEIYLIRNEETISKWSL HEFENTDIKHYQGYKPDFIMVLIDADFIYQIYVEPKGMNFWKKMLGNKIYWKASGLRRLK F >gi|313656766|gb|GL545251.1| GENE 114 118595 - 119035 666 146 aa, chain - ## HITS:1 COG:SP1996 KEGG:ns NR:ns ## COG: SP1996 COG0589 # Protein_GI_number: 15901819 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 1 146 1 146 150 148 52.0 3e-36 MLKQYSHIQIAVDGSKEADLAFTKAVAIAKRNNASLEILHVIDTRSFQNVSSFDSAMVEQ VSADAKKKLEEYYDRAVKAGIKDVHYSIEFGSPKTIIAHDFPKKHQTDLIVLGATGLNAV ERLLIGSVTEYVTRTAECDVIVIRQK >gi|313656766|gb|GL545251.1| GENE 115 119100 - 119372 132 90 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIIKIVVLIFLVLVFLLAYFLWSKRNSSFLIFNSSQKNYKFCMTATSLSLGLITLFGIFF LFLNNILLNLLTISLACLVILFFGITITKK >gi|313656766|gb|GL545251.1| GENE 116 119678 - 120979 1327 433 aa, chain - ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 1 421 3 419 427 521 63.0 1e-148 MKPLAYRMRPKDLSEVVGQQHLVGPGKIIRRMVEAKLLSSMILYGPPGIGKTSIASAIAG STKYAFRILNAATDTKKDLQQVALEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIV LIGATTENPYISISPAIRSRCQIFELHPLSASDAQIAIQNALKDSDRGLGKYHVQLNSDA EQLLIEKGNGDLRATLNALELAVLSTYAENGKDTQNKLVITQEIMADSIQVKSQNFDANG DGHYDLVSAFQKSIRGSDTDAALHYLARLIESGDLISICRRLLVIAYEDIGLANPAACQH TALAVWTAQQIGLPEARIPLSNAVIELALSPKSNSAISAVDTALDVVRNKKIGSIPNHLK DSHYSGANKLGHGTDYLYPHNYTNDWIPQQYLPNSLIHDSYFNPKGNSKIESALKNQYKK LKVLQEKGLNNRR >gi|313656766|gb|GL545251.1| GENE 117 120976 - 121443 544 155 aa, chain - ## HITS:1 COG:BS_yueI KEGG:ns NR:ns ## COG: BS_yueI COG5506 # Protein_GI_number: 16080228 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 3 124 4 121 132 67 35.0 1e-11 MADNLNERLEQSSHGPLQTKPDERHRFLGSLRERVYLKMTIKDLGDPANLEIFLKHINDY KVYQILINGKMPQNETIDQIEAACAKENIPFTLVSDESAQTNLDSAAILVVAKSAINKER IELKQVYPPEFPKEELATPKKEGFWHKLFHRGDVE >gi|313656766|gb|GL545251.1| GENE 118 121525 - 122136 1046 203 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855293|ref|ZP_04645612.1| ribosomal protein S4 [Lactobacillus jensenii 269-3] # 1 203 1 203 203 407 100 1e-112 MSRYTGPSWKRSRRLGISLSGTGKELARRNYAPGEHGPNNRGRLSEYGMQLHEKQKLRWM FGLNERQFRNLFNRAGKIRQGEHGTNFMVLLERRLDNIVYRLGLATTREQARQLVNHGHI LVDGKRVDIPSYEVKVGQEISLKEKSKNLQQVKDALEAVVSRPSFVSFDENKLTGSLVRL PERDEMEPEINEALVVEYYNKLL >gi|313656766|gb|GL545251.1| GENE 119 122429 - 123403 900 324 aa, chain + ## HITS:1 COG:SPy0728 KEGG:ns NR:ns ## COG: SPy0728 COG4477 # Protein_GI_number: 15674783 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Streptococcus pyogenes M1 GAS # 1 245 1 245 574 94 23.0 2e-19 MSSIQSLIIISIVVLLIAATGSMLMLNRRQSKILSFFEQDLNDLEDLGISADIKNLAQME LAGESLKTFNSWKKVYEKANEKLIPDLHTRIEQCQEVNTHYNLLRARKEIKAIDSAIDSV SEDLNKTKEVFRQLLESNRANKLQYDSLIKIYRDIRKEVLAASFYYGPALEKIEDELSEL ERHFNNAKNLSAQGDYIEGKRVLEKIDKRLAHLKDLLPRIKKEQNAIQDVYPEQLDELTD AYRKMKVDKLAVSKIDFLEEVKKLQNLLEESKDLESRLEIEKLEANNNKLAKKLIVCMTS SLRNIQPVHLFNKIKTKFFACYLI >gi|313656766|gb|GL545251.1| GENE 120 123316 - 124161 644 281 aa, chain + ## HITS:1 COG:L7722 KEGG:ns NR:ns ## COG: L7722 COG4477 # Protein_GI_number: 15674133 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Lactococcus lactis # 1 276 298 574 576 107 24.0 3e-23 MYDIITKEYSARPFVQQNQDKILRLLSHLENGSSQLIDKLEHIDQSYELTHGELQEAKDL LKEVTKMEEKYNYDVQALADGEGVYSEIKERWLKQLKRISEIEKREQELVDEVDGLYEAE KMANESIAGFKQDVALIYRRLQRRNLPGKPDSFIQMYTLVVNEISHTSQELNQVRINMEK ISEEMIQISDDVDRLKKEADQIINYAALVELTMQYSNKYRSNPKVAKARRATMDLYSRAY NYKDALDTIATVMEQVEPGSYQRIESAYYFQLSTPEDDQDD >gi|313656766|gb|GL545251.1| GENE 121 124248 - 125402 969 384 aa, chain + ## HITS:1 COG:SPy0816 KEGG:ns NR:ns ## COG: SPy0816 COG1104 # Protein_GI_number: 15674857 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Streptococcus pyogenes M1 GAS # 1 370 1 369 373 360 50.0 3e-99 MIYFDNSATTRIFPSALETYNKVSEEIWGNPSSLHKLGDRAHQLLEASRKQIAGLLEVKP NEIFFTSCGSESNNLAIKESALTKREFGKHIITTSVEHASVTNTFTALENMGYRVTRLPV DSEGRININDLRNSLDSDTTLVSIMGVNNEIGTIQPIIEAGELLENYPNIHFHVDNVQAF GKNIWNQVFCPRVDLMSLSAHKYHAPRGVGILYKKSGKMLLPLIDGGGQEKGLRSGTENL PAIAATAKAMRLVSEKAPENYEREYAIKERIYNYLAGKPGITIFSPLKSNFAPHVLTFSL LGIRGETLVHTLEQKGIYVSTTSACASKVSEEASTLASMKVDEKVATSSIRLSFDASNTL QEADEFIKVFDKIYRHFAKVNHLR >gi|313656766|gb|GL545251.1| GENE 122 125412 - 126626 1409 404 aa, chain + ## HITS:1 COG:L183112 KEGG:ns NR:ns ## COG: L183112 COG0301 # Protein_GI_number: 15672361 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Lactococcus lactis # 3 387 5 389 406 486 61.0 1e-137 MQYTEVMVRYGELSTKGKNRKDFIGRLAGNVEKVLADLENVKIYPKHDRMHIVLNGASFE EVDRRLKKVFGIQTYSPVIRTEKTLEAIKKTALEIMQAVYKSGMTFKVNTKRADHHFEYD TNQLNLMVGDYLFDNLQDPKVEMKHPDVVLRLEVRQDAVYISNQLLHGPGGMPVGTAGKA VMMLSGGIDSPVASYLALKRGVDIEMVHFFSPPYTSDKALAKAKELTGILANYCGKITFI AVPFAEIQETIKEKLPEGYLMTIQRRFMLRLADMIREKRKGLAIFNGESVGQVASQTLES MAAINNVTTTPVIRPVATMDKTEIIRLAEEIGTFDLSVMPFEDCCTIFAPPRPKTKPRID KAIEYEKRLDVEGLLQRAMDGIEISTIKPNEKFIDDQTADQDLL >gi|313656766|gb|GL545251.1| GENE 123 126626 - 127330 638 234 aa, chain + ## HITS:1 COG:SP0280 KEGG:ns NR:ns ## COG: SP0280 COG1187 # Protein_GI_number: 15900214 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Streptococcus pneumoniae TIGR4 # 1 232 1 236 240 208 51.0 6e-54 MRIDKYLANMNVGSRKEVHNLIKAKKVTINEKLVKQAKQQVTENDMVKVDNQTITYQQFH YFMLNKPTGVITATEDPQQKTVLDLIASKDRYPDLAPVGRLDKDTTGLLLITNDGQLNHN LLSPKKHVAKTYFVELDQEIANEVDSAFAKGVALADGTQVGSAQLIIDKSNKKQGLITIH EGKFHQIKRMFGLFDLGVVKLKRIKMGNLSLDENLPQGKYRELTEAEISALKDS >gi|313656766|gb|GL545251.1| GENE 124 127589 - 130240 3113 883 aa, chain + ## HITS:1 COG:SA1488 KEGG:ns NR:ns ## COG: SA1488 COG0525 # Protein_GI_number: 15927242 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 7 880 2 875 876 1170 62.0 0 MEVEMTDLAPKYNPNEVEKGRYQTWLDEDLFKPSGDKKAHPYSIVIPPPNVTGKLHLGHA WDTSIQDTLIRLKRMQGYDTLYLPGMDHAGIATQAKVEAKLRKQGLDRHQMGREKFVKQV WDWKDEYANIIKSQWAKLGLSLDYSRERFTLDKGLSKAVRKVFVQLYNEGLIYRGQYIIN WDPKLETALSDIEVIHKDDKGAFYHIKYPFVDGSGFVEIATTRPETMFGDVAVAVAPGDE RYKDLVGKELVLPLVGRHIPIIEDQHVDPEFGTGLVKITPAHDPNDFLVGNRHDLKRINV MNANGTMNEECGKYTGMDRFDCREALVKDLEKEGYLIKIEPIVHSVGHSERSGVQVEPRL STQWFVKMKPLAEKALENQKTAGKIDFVPERFSQTFEQWMENVHDWVISRQLWWGHRIPA WYNKETGEMYVGEEAPKDIENWRQDEDVLDTWFSSALWPFSTLGWPDENAEDFKRYFPTN ALVTGYDIIFFWVSRMIFQSLHFTKQKPFDHVVLHGLIRDEQGRKMSKSLGNGIDPMDVI DKYGADALRWFLLNGTAPGQDTRFSYTKMDSAWNFINKIWNASRFVIMNLPSDAKPAHMP DVAKFDLADKWIFDRLNHTVKEVTRLFDEFQFGEAGREMYNFIWNDFCDWYIEISKVALN GDDEELKARKQENLIWILDQILRLMHPIMPFVTEKLWLSMPHEGKSISVASYPVAHAEFE NNEADNQMNFMIEVIKAVRNIRMEVNAPMSSSIDILIQLDKAADKKILDDNSEYVQNFLH PKKLEVSTEIAAPKLAKTAVIPGAQIFVPLADIVDLDEELAKMEKEAKRLEGEVMRASKK LSNEGFVKNAPEAVIAKEKEKQADYESQLEAVKARMQELKESR >gi|313656766|gb|GL545251.1| GENE 125 130242 - 130607 220 121 aa, chain + ## HITS:1 COG:lin1586 KEGG:ns NR:ns ## COG: lin1586 COG0285 # Protein_GI_number: 16800654 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Listeria innocua # 9 115 8 114 429 91 42.0 4e-19 MKKFDKISEFLDYLYALPNLHPKSDLSYIKRVLAKLDNPQDKVKTIHITGTNGKGSTSYY ISNLLKKAGQKTGLFVSPYIKEFNERIQINGKNIPDSDLIKLANQVVAVITEIQKKKLIL I >gi|313656766|gb|GL545251.1| GENE 126 130631 - 131491 693 286 aa, chain + ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 1 279 127 419 427 160 35.0 3e-39 MAFLYFAKQNCDYAVIEVGIGARRDKTNVIVPQVSVITTIGFDHEAIIGPTLADIAKEKA GIIKEKTPIVLGNLPEEVLPIVLSEAKQKNAPVYLFGQDFKLHTGSVFELTSKQNYRFNL RPQVEGYDIALSVKVFELLNLHLSKAEIEAAINETQIPGRYQVLQTKPQIILDGAHNIQA IENLLAFVRKEKTSGRVYVLLAMMKDKDITEVLGKFKDEQVLLTTLPYPRTAKLADYHKL NVTLPFEQDYWQAYLNLKQKMQSNDILVVTGSFYLVSAILNKGEQK >gi|313656766|gb|GL545251.1| GENE 127 131488 - 132168 672 226 aa, chain + ## HITS:1 COG:CAC0855 KEGG:ns NR:ns ## COG: CAC0855 COG0637 # Protein_GI_number: 15894142 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Clostridium acetobutylicum # 10 195 1 182 212 87 29.0 3e-17 MKVLGINGDIKGVIFDLDGLLVNSEKLYWQANIQAAKEAKLDIPEDSYLKLTGATAKDMQ NFYHKYFATEVERDAFIKRTDDLVWQWTDEGKLKLQKGVRKALDRFKTSDLRMAIASSNY KKVIEHALDKTGIESYFDFYLSYDDVEKFNLAPKPAGDIYSLAAKKLNLNKQEVIIFEDS STGIAATKDAGIQGIMIPDLKSPSLKDKENASLICQSFLDFLEKIA >gi|313656766|gb|GL545251.1| GENE 128 132203 - 132826 588 207 aa, chain + ## HITS:1 COG:L0306 KEGG:ns NR:ns ## COG: L0306 COG2003 # Protein_GI_number: 15672989 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Lactococcus lactis # 73 206 91 224 226 116 43.0 4e-26 MQIADKDHYLLKTDQELLSEIFILLEEAGITSFVELNKFLLDKKLENFGQIYDYLTSCQI DDELLSRTITLLKRLKAVRTRKLIQFVSSHEVGKYLIDRFLGIEQEQLVVIYLDNKNKVL GERLLFQGTVNRSVVHPRDIFRWAVFYNSVGILIAHNHPSGDTSPSQKDIEFTKQIDKAS DLMGINFLDHIIVADRSYLSFKEEQLI >gi|313656766|gb|GL545251.1| GENE 129 132925 - 133221 144 98 aa, chain + ## HITS:1 COG:lin1583 KEGG:ns NR:ns ## COG: lin1583 COG1077 # Protein_GI_number: 16800651 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Listeria innocua # 1 73 1 73 337 110 75.0 4e-25 MFGLGSKNIGIDLGTANTLVYMEGKGIVLREPSVVAKNTQTGEVISVGSEAKEMIGRTPG TIRAIRPMKDGLLQIMIQLQQCLSTLWKRLLVILSLQL >gi|313656766|gb|GL545251.1| GENE 130 133182 - 133928 935 248 aa, chain + ## HITS:1 COG:lin1583 KEGG:ns NR:ns ## COG: lin1583 COG1077 # Protein_GI_number: 16800651 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Listeria innocua # 3 245 92 333 337 285 65.0 6e-77 MEKTVGNSKPAVMICVPSGVTEVEKRAVIDAARVAGAREAYVIEEPFAAAIGAGLPVMDP TGSMVVDIGGGTTDVATISLGGIVSSRSTRQAGDKFNSSISSYIHQKFNLLIGERTAEDI KIQIGSASVEKAKEIESMNIRGRDLITGLPKSVDVNAVDVAEAIQEVVQDIIVAIKETLE ETSPEIAADVIDHGIVLTGGGALLKNLSEVISEATKVPVFIAQDPLDCVAIGTGESLKNI EVMRRAHK >gi|313656766|gb|GL545251.1| GENE 131 133978 - 134835 746 285 aa, chain + ## HITS:1 COG:lin1582 KEGG:ns NR:ns ## COG: lin1582 COG1792 # Protein_GI_number: 16800650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Listeria innocua # 1 281 1 275 295 151 35.0 1e-36 MKKFLQNRKIFVSFLTTLLVVIILGITVSLRSKRNSPLFFQKMGNDIISVASRIVNWPVS LASGGISNINSIINMQKENDHLKSQVSNLAQTKARNSSLEAENKQLKSALNLKKTLTTYT IVNASVISRSADTWSDILVIDKGSSSGIKKNQAVMSGGGVIGRILEVNSATSKVELITTT DKSANRFSVEADSANGKKVHGIITVNSDDTNSLYFTQVVDSKKLKKGAKVYTSGLGGRSP KGLLIGTVAKTTRDSFGLSDLIEIKPAGSIGDASVVSVIERKVSE >gi|313656766|gb|GL545251.1| GENE 132 134835 - 135380 503 181 aa, chain + ## HITS:1 COG:no KEGG:LJ0964 NR:ns ## KEGG: LJ0964 # Name: not_defined # Def: rod shape-determining protein MreD # Organism: L.johnsonii # Pathway: not_defined # 5 180 2 177 177 102 34.0 9e-21 MNSRSKFSRWYIAVAEFIALIFDGVISIYAHSLLGLSGISASFWLIVIAVAACSLIDENN NNEIILAFFMGLIADIYYLGFIGPYTVGLTFVSWLCQKVTRILPDVFVVRVPVIVICYLL FDVFFWFILTIASTISIPFSQVIWGMIANAILALILASVTYPIFNFLGREYPFAIRMNYY K >gi|313656766|gb|GL545251.1| GENE 133 135632 - 135961 174 109 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00820 NR:ns ## KEGG: LCRIS_00820 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 109 1 109 109 113 59.0 3e-24 MLMIIFLPILGFITAAIVNAVFPKAKFRGYDVLPFFFIVACQNISSFLKNPSFLPYGFLT YFVLVLVISISRAIKFKNIDSGKLFRKLWDYLTVCTIFWYIGLLFTIII >gi|313656766|gb|GL545251.1| GENE 134 136159 - 136590 649 143 aa, chain + ## HITS:1 COG:lin2148 KEGG:ns NR:ns ## COG: lin2148 COG2001 # Protein_GI_number: 16801214 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 138 1 138 143 179 57.0 2e-45 MFMGEYHHNLDTKGRLIIPAKFRNQMGDKIIFTRGMEGCIFGYSEEEWKKIEAKLAKLPL TKRNVRKFTRLFYSGAMESEFDKQGRVNLTTTLKEHAELEKECVIVGVSNRIEIWSQRRW DDFTDDADENYDDIAEDLDDIEL >gi|313656766|gb|GL545251.1| GENE 135 136587 - 137540 981 317 aa, chain + ## HITS:1 COG:SA1022 KEGG:ns NR:ns ## COG: SA1022 COG0275 # Protein_GI_number: 15926762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Staphylococcus aureus N315 # 5 317 2 310 311 342 57.0 4e-94 MTTNFKHTSVLLRETIDNLNVKDNGLYVDATFGGGGHARYLLSKLNNGILVGFDQDNYAI NAAKDNFYDYLSDNHQPHLIMVHDNFSHVTENLNKLGFNDGIDGIYYDLGVSSPQFDQPD RGFSYRFDARLDMRMNQEQELDAYQVVNSYSQSQLADILYQYGDEKFSRQIARKIVQRRQ QKPIETTFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLK PGGRISVITFQSHEDKIVKKIFKQNSEVEVPRGIPVIPDNLKPKLKLVNRKPILATASEL ADNNRSHSAKLRVAEKL >gi|313656766|gb|GL545251.1| GENE 136 137553 - 137927 476 124 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1208 NR:ns ## KEGG: LGAS_1208 # Name: not_defined # Def: protein required for the initiation of cell division # Organism: L.gasseri # Pathway: not_defined # 1 123 1 119 120 100 47.0 3e-20 MADSSARNLNYNYEPNRKARSTFETERRMSVDPNKVPFSRFEIFILVAGSIVTIAMAAML VFTSVAATSAQHQLANIQTELSSTQTDTSNLRQEIGELTSSSRMNKIAKQEGLSLIESNI RTVD >gi|313656766|gb|GL545251.1| GENE 137 137930 - 139195 1088 421 aa, chain + ## HITS:1 COG:lin2145 KEGG:ns NR:ns ## COG: lin2145 COG0768 # Protein_GI_number: 16801211 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 24 410 14 402 752 289 43.0 6e-78 MKNSSNIKTTKTNVHSNRFQVGRVLQVIVALVFLIFLGRTLYISISKTVAGENLSTRTAA LYKRNQVLKATRGTIYDRNGFTIAEDSHVYTVYAILDHSSINYKNKPEYVVDKDKTAEKL ATVLPLSKEQILKYLNPKTKAFQVQFGSGGSNLTIEQKKKIEQMKLPGIKFIEAPSRLYV NGVFASHIVGLAQPIYNKKTKSTDLVGTMGIEAYYDKYLAGKDGFKESSVDASEYQLPNG TNAYRAAKNGDDIYLTLDSQLQNYMENLLTRVQNKYQSKALTAVVEDLRTGKVLAASQRP TFDSQTKKGLTSSYTDLLTQSTFEPGSVFKILSFAAAINSGHYNPNELYKSGSLTVNGST IHDWNVTGWGSIPLYEAFPRSSNVGLSILEQKMGATTWRSYLNKFGITKKQELLCLVNRQ E >gi|313656766|gb|GL545251.1| GENE 138 139192 - 140091 814 299 aa, chain + ## HITS:1 COG:BS_pbpB KEGG:ns NR:ns ## COG: BS_pbpB COG0768 # Protein_GI_number: 16078580 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Bacillus subtilis # 2 299 410 713 716 167 37.0 2e-41 MIAFKSKLDQAVTSFGQGVNVNVWQMMQAYSILANKGQMVKPQLVEKIVSPSGKVIQNYK VQKVGKKVVSESTVKTVLQGMQDVVNKQYGTGTTYKIAGKSIAVKTGTAQIAGPNGYLTG NNNYIFSVIGVTPANNPHYAIYLTMKQPQKMTDPAETILASIFKPMMNRLILSSSVTKKA SASKEEVPNVIGKSITNAKNDIEKVALSVEVLGSGDVVTQQTPATGQKLTAGSKVFVLTS GKIAAANFTNWTVEEVKQYAALAGISVKVSGSEDGKVKSQNIKVGTLLKSGQEIIIKTK >gi|313656766|gb|GL545251.1| GENE 139 140113 - 140409 340 98 aa, chain + ## HITS:1 COG:BS_mraY KEGG:ns NR:ns ## COG: BS_mraY COG0472 # Protein_GI_number: 16078583 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Bacillus subtilis # 5 94 7 96 324 63 44.0 7e-11 MLYSIYALVISMVITAIFLPWLIVFMHMHHEGQPIREEGPKAHLKKAGTPTMGGTVFVIA SIIASVSVLVWKQSFNNIAIILIIALLGHGLIGFWMMD >gi|313656766|gb|GL545251.1| GENE 140 140529 - 141056 480 175 aa, chain + ## HITS:1 COG:lin2143 KEGG:ns NR:ns ## COG: lin2143 COG0472 # Protein_GI_number: 16801209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 13 170 155 313 324 186 62.0 2e-47 MPWGGALTGPVIFVLFTIFWLVGFSNAVNLSDGLDGLASGLSIISFATYAYLAFKQENLA ILVFCMSVIGGLIIFLVFNHKPAKIFMGDAGSLALGGSLAAIAILLNRPWSLLLVGLVFV CETASVMMQVTSFKLTHKRIFKMTPIHHHFELSGWSEWKVDIVFWIVQLILVFYI >gi|313656766|gb|GL545251.1| GENE 141 141076 - 142446 1636 456 aa, chain + ## HITS:1 COG:BH2567 KEGG:ns NR:ns ## COG: BH2567 COG0771 # Protein_GI_number: 15615130 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus halodurans # 1 455 1 448 450 385 47.0 1e-106 MKDIKTYQGKNILVLGLGKSGFAVSELLLKLGAKITLNDKQDLSNNEHAQKLEKMGVRVI GGHHPIELLEKEHFDFFVKNPGIPYENPMVQKASELKIPIITEPEIALSASEAPFVCVTG SNGKTTTVMLTSEIIDHHLAKSGHHAYAVGNIGVPISEVVQKATKDDVLVVEISSFQLLG VTDIKPKVAAIVDIYPTHLDYHKTMENYIAAKLNVTRFQTSDEYFIANFDQKEILAQEQA TTKAKIQTFSMNDHSASYFVGDEYLESQSEKIMKIADIKLPGKHNLQNSMVAIAISKLMG AENSDIQAVLSTFAGARHRLQYVTTLNNVKIYNDSKSTNIEAATVAIKAFSEPEVLIGGG LDRGFTFDPLVPLLKEHVKAVVLYGETRYLLADAARKAGIKEIKIVNTLKEAVPTAYKLT QPGDVLLLSPACASWDQFKTFEQRGDYFMEYIKELN >gi|313656766|gb|GL545251.1| GENE 142 142449 - 142928 470 159 aa, chain + ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 135 1 133 363 157 57.0 6e-39 MRVIFTGGGTGGHIYPILAIIERLKETGISKNDEILFVGTKRGLESKIVPHAGINFKTIE IQGFSRKNLIKNIETVKLFIKATKEAKKIISKFKPDVVLGTGGYVSGAIVYEAAKMGIPT LIHESNSVVGLANKFWDITLIKFVIHLMMQQSNLAKKIS >gi|313656766|gb|GL545251.1| GENE 143 143018 - 143560 418 180 aa, chain + ## HITS:1 COG:lin2141 KEGG:ns NR:ns ## COG: lin2141 COG0707 # Protein_GI_number: 16801207 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Listeria innocua # 2 174 187 363 363 154 44.0 6e-38 MPTVLVFGGSRGALAINQVMEAALSEFSKKPYQVIWATGQYYYGSVKEKLAGKRIPENLR IVPYIDNMPALLPQMSCVVSRSGATSLAEFTALGVPVVLIPSPNVTHNHQMKNALDMEKA GAALVIPENDLNSNNFVSSIDHILLDSEYASKMSTASKKLGVPDSANQIISVMKALQAQK >gi|313656766|gb|GL545251.1| GENE 144 143591 - 144187 617 198 aa, chain + ## HITS:1 COG:lin2140 KEGG:ns NR:ns ## COG: lin2140 COG1589 # Protein_GI_number: 16801206 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Listeria innocua # 38 166 12 137 270 62 35.0 6e-10 MTNRRITKKDPKKDLDNFLDYTKNKTNIANRTNHKASDSLTNLNNERKSALRRRLGAIIV ISILAILGLGIYVSSYTRLQRIIVVGAPELNATEVIKKSGIKAQDQLIDYWLGKNTYESK LKKYYPEIKSAKLKMAGLNQIKLDLQEYKTLAYVNQNGKYYKILNNKKIARQKLTKCKST NLYQYLLVIQISQVYLLI >gi|313656766|gb|GL545251.1| GENE 145 144118 - 144444 178 108 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0677 NR:ns ## KEGG: LDBND_0677 # Name: ftsQ # Def: cell division protein FtsQ # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 2 108 174 280 281 105 47.0 8e-22 MQIDKSIPIFVSYSNKSSLFTDLKALKSIPTKLRNQISIINGRSIRKNKIVLLMKDGNII IGNTDTIAQKIKYYPKIKSTLNNKSVIDLEIGAFSYPLTDNEKNNLGF >gi|313656766|gb|GL545251.1| GENE 146 144647 - 145894 1353 415 aa, chain + ## HITS:1 COG:SP1667 KEGG:ns NR:ns ## COG: SP1667 COG0849 # Protein_GI_number: 15901502 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Streptococcus pneumoniae TIGR4 # 1 356 42 396 457 269 39.0 7e-72 MRQGKIVDIDQTANAIASALKNVEQKTNSKIYRVVTGIPVGMLQLETSTGLINIGEDGRE VSDKDVKRVLELAIKQAVKSGREAIAFLPSKFLLDGKTDVDDPRKMIAHSLEVHGILLTA PTSDLHNIKKAIERAGYQNNFFIPTPLAIASVALDEGERTFGSVILDIGGGTTTATVIHE NKIKYATIDLEGGEDVTKDISVVLGTSKKDAEQIKLDYGSADPELTSAEDKFSVKTVGKS EQASVDENYLSQIIAARMDQILSRIGKGLSSHDAFKLPGGVVITGGMTLLQGLQSTVEKH FEVKTRVYQPDEMGLRNPAYAAAYGVVNYVYNLSDIDLLVNGVIYGTSASHDNPLAEFSE NSINIFKRHAEVSENNTKEAYNGTIVPRVDREKDGANKSENSKKGIRGFFKNFFD >gi|313656766|gb|GL545251.1| GENE 147 145909 - 147270 1639 453 aa, chain + ## HITS:1 COG:BH2558 KEGG:ns NR:ns ## COG: BH2558 COG0206 # Protein_GI_number: 15615121 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Bacillus halodurans # 3 327 2 326 382 363 68.0 1e-100 MDFQFDQDDNKNAVIKVIGVGGAGGNAVNRMIDEGVQGVSFIVANTDVQALNSNKAENKI QLGPKLTRGLGAGSHPEVGQKAAEESEQTIEEALKGADMIFITAGMGGGTGTGAAPVIAK IARETGALTVGVVTRPFTFEGPKRSKNAAAGIAQLKQYVDTLVIIANNRLLEMVDKKTPM MDAFKEADNVLRQGVQGISDLITSTDYVNLDFADIKTVMENQGSALMGIGRASGENRTVE ATKLAISSPLLEVSIDGAKQVLLNITGGPDLTLFEAQDASEIVSKAAGDDVDIIFGTSIN ANLGDEVVVTVIATGIDSKAEEEASKQLPGHHTVNRPRVDIKPEIEVNQAPPTRTVEADN STSKVEATEKPSEKPQVTEETHQKESMVNPIDVWNLDENNNRREVKKPDVASKNQDTFDT FTSDDQDSISQIETSAENGDNNDIPFFRHRNQQ >gi|313656766|gb|GL545251.1| GENE 148 147286 - 147744 521 152 aa, chain + ## HITS:1 COG:BS_ylmF KEGG:ns NR:ns ## COG: BS_ylmF COG1799 # Protein_GI_number: 16078603 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 49 149 46 145 149 96 47.0 2e-20 MAALEKISSFFGISDSSVEDEYTSEESTASSQNEVEVPTEIADHLNNKGRNNVVSIKSGS MPQSKIVLYEPRVYSDAKEVAQNLLSNKAVIINFSRMDDDSARRIVDFITGTVYALNGEI QRVGDKIFLATPPKFETDGKITELVEKKDKLS >gi|313656766|gb|GL545251.1| GENE 149 147744 - 148031 346 95 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_04060 NR:ns ## KEGG: LAC30SC_04060 # Name: not_defined # Def: cell division membrane protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 95 1 95 100 70 45.0 3e-11 MISFLLNIISVINWLLYIYTILIVLNAIMSWVPFLYNSVVGRYLNKVVEPYVGLFRIGFL KTIAIKAGVDISPVLAIFVIYIIQNLLTQLAFKLI >gi|313656766|gb|GL545251.1| GENE 150 148077 - 148901 363 274 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227891037|ref|ZP_04008842.1| ribosomal protein S4e [Lactobacillus salivarius ATCC 11741] # 1 265 1 257 262 144 35 1e-32 MDKNILLSEQIKKRTQFLRSKNDNEDISQLSGYLMQICYGKEAVLTNFLDPGARVDLREL AQSDFYIQEFGGYDKAEKCRVIISNDWEYKDVENFQFSLIKITYNHKFASITHSQILGTL LGSGLSPASLGDIITDGKGNWQFFISDIMLDFVCREITRIGKVAVRLDRIPLKQILNIED DVQNVKLVVNSLRIDAILAALTRTSRNIINNQIEKENIKLNWHKINNSNIIVTVNDVLSV RHFGRIEISNITTTRKGKYRLEANLWLSKKKRMY >gi|313656766|gb|GL545251.1| GENE 151 148907 - 149257 311 116 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_04070 NR:ns ## KEGG: LAC30SC_04070 # Name: not_defined # Def: cell division initiation protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 97 11 107 278 97 52.0 2e-19 MDIHDKEFTLRGRKGYDRYEVDSFLDQIVDDYGDCLDNNVDLKNENVALKDKVKELESEV NRLDELRKSINDEVLKAQKDASELRQKAQEDAKKLLKMQRIKQHLKIKVWFIKMIL >gi|313656766|gb|GL545251.1| GENE 152 149233 - 149601 148 122 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855266|ref|ZP_04645585.1| ## NR: gi|238855266|ref|ZP_04645585.1| cell division initiation protein [Lactobacillus jensenii 269-3] cell division initiation protein [Lactobacillus jensenii SJ-7A-US] cell-division initiation protein [Lactobacillus jensenii 208-1] cell division initiation protein [Lactobacillus jensenii 269-3] cell division initiation protein [Lactobacillus jensenii SJ-7A-US] cell-division initiation protein [Lactobacillus jensenii 208-1] # 1 122 122 243 243 189 99.0 7e-47 MVYQNDTLRNDYQRLKTQVADFRYKIRAKLQKQIEALDDNTWQYYLDEATNVERIYPSDG GEPIPISSLPTVDNNSQSGVNLEHDKRTDEDISEPSQKEDNQENKNDSDVTIVFPDDYKD HN >gi|313656766|gb|GL545251.1| GENE 153 149816 - 152608 3689 930 aa, chain + ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 930 1 932 932 1178 61.0 0 MRIKDTLNLGKTKFPMRGNLPNREGEWQKAWEENKLYEQRLKLNEGKPRFDLHDGPPFAN GNIHMGHSLNKISKDIIVRYKNMSGFYAPFVPGWDTHGLPIEQQLAKQGVDRKTMDRAEY RELCRKYAMEQIDKQRTDFKRLGVMADWDHPYITLQPKFEAEEIRVFGKMFEKGYIYKGL KPVYWSPSSESTLAEAEVEYHDVKSPAIYVAFQVEDGKGILDNDTYMVIWTTTPWTIPVN VGITVNPKFEYSVIKVAGEDRKFVIGTSQLEKVAEDLEWKDYEVVDTFKGTDFDRMTVKH PLYDKTSLVMNDTYVTAEDGTGLVHNATGFGEDDYNVGKKYGLPVYSPMDDQGRYTKDIP DPNLVGVFYDDANKMITKQLEEKKALLKLSFFTHSYPHDWRTKKPVIYRATTQWFASVDA FRDQILAEIEKANFTPSWGKTRLYNMIKDRGDWVISRQRAWGVPLPIFYAEDGTPIVSKE TIEHIAQIFEKEGSNAWYTHTAEELLPAGFKSEHSPNGKFKKETDILDVWFDSGSSHQGV LAVRPELHYPADLYLEGSDQYRGWFNSSLITSVAVSGHAPYKSVLSQGFVLDDKGHKMSK SLGNVISPNDVIKQMGAEIIRLWVASADTTSDVAVSKGILQQNAESYRKIRNTLRYMLAN TSDFDPKTNRVAYSDLRSIDQYMEVLLNKLVKDCLAAYDRYDFTSVYKMVFKFISNELSA FYLDFAKDVLYIEGEDSLPRRAMQTVIYDALVKLTKIMTPILPHTMEEAWGYLKEDEDYV QLSDMPEVETFDNEAELVENWTEFMKFRDDVLKALEEARNDKLIGKSFEACVDVYPTAET KAVFDKLNTDMRQILIVSKLNILDGEAPADAKDFETAKLVVKRAEGEVCQRCRMTRNDVG ADAQLPTLCGRCAEIVEENFPEEVKEGLED >gi|313656766|gb|GL545251.1| GENE 154 152608 - 152829 285 73 aa, chain + ## HITS:1 COG:PA2622 KEGG:ns NR:ns ## COG: PA2622 COG1278 # Protein_GI_number: 15597818 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Pseudomonas aeruginosa # 1 64 1 64 90 57 43.0 5e-09 MRTGTVKQFDSAAGFGFIDDDLTKASYFVFYTAIKENGYKSLEIGQRVRYQLAQGKKGLQ CINVYIDNGEGGY >gi|313656766|gb|GL545251.1| GENE 155 152829 - 153395 811 188 aa, chain + ## HITS:1 COG:BS_yqkG KEGG:ns NR:ns ## COG: BS_yqkG COG0494 # Protein_GI_number: 16079418 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus subtilis # 3 172 4 172 185 130 42.0 2e-30 MDLREQEIASEQIFKGQIVDLSVRTITLPNGKTATREIVKHRPAAAAMAINAENKMLLVE QWREPIKALTLEIPAGLIDDTDASPLDAMKRELNEEGGLKAEYWEKVSEFYSSVGFSDEK LYLFYCDTLTKLEDKRDLDDDEFLTSHWYSLSELKQLLSEGKIIDAKTIYAITVWENMIL SGLKESND >gi|313656766|gb|GL545251.1| GENE 156 153388 - 153666 298 92 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855262|ref|ZP_04645581.1| ## NR: gi|238855262|ref|ZP_04645581.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 74 1 74 92 129 100.0 6e-29 MTEKRADYQRKHNESKSFPLLTDFFRGNKRNQEINSEGYEEGINQDVNSPEYQRNPKLTR EEKINRLKRGLNIAIGIVLGLLVLVFVALFKL >gi|313656766|gb|GL545251.1| GENE 157 153680 - 154369 783 229 aa, chain + ## HITS:1 COG:HI1216 KEGG:ns NR:ns ## COG: HI1216 COG0775 # Protein_GI_number: 16273135 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Haemophilus influenzae # 1 229 1 228 229 147 38.0 1e-35 MKIALIVPMPEEAEFYYQHFHDRKEEMFGCTKFEHFSVNENEIYLGLSGIGKVNAAMNLT SLLAKVDIDLIIMTGSAGSLKPEIKKKDVIVVDSFAYHDAHNTAAGDYVEGQIPREPARF NLQSKEREQFNSFLKVKKVAYKEGLVVTGDSFIASEAAKAEIEANFPEAVGVEMEGASFA QVAYHFKKPLIALRAISDNGDEDANESFEEFVKEAGQKAADLIISYLKQ >gi|313656766|gb|GL545251.1| GENE 158 154388 - 155551 1167 387 aa, chain + ## HITS:1 COG:BH1260 KEGG:ns NR:ns ## COG: BH1260 COG1104 # Protein_GI_number: 15613823 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Bacillus halodurans # 6 385 4 379 386 303 42.0 3e-82 MERKLIYLDNAATTPVSESVVTEMTKQLAENFGNPSSTHTFGRKALEVVDEARHRIAEFI NAQNDDEIIFTSGGSESNNTVLQGIAKKYHYDCQIITTAIEHPSILNTVKDLKASGVDVV YLPVDETGHIGLADLKAALTEKTVLVSTMAVNNEVGSINDLAKIGQIVHEYNPKICFHVD AVQGLGNIDLDVQAMQIDFMSTSAHKINGPKYIGFLYERTGLTLPSLITGGEQEKKRRAG TTDAPSIAGFGEAIKILQGVSRSDEQKRYQEFQQIVLDALDANEIKYQVNGSLTGLVSHH TLNLHLIGIGTYVMLTNLDLAGFAVSGGSACTAGSLTPSHVLTAMYGADSPRIEESIRIS FGRLTKKSEVEAFADALVKMAKRLQKA >gi|313656766|gb|GL545251.1| GENE 159 155603 - 155938 411 111 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1219 NR:ns ## KEGG: FI9785_1219 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 110 1 110 111 162 75.0 6e-39 MANTVIINGDTRKFTINENVKRYSLIDVGFVKSPKGNFVYEHPLYNESPYNAPTKLKMTI NQDLDHLTMVITDKNGLQKVNIFKNDQLKPTVDLLNFILKDLIEREIIKPL >gi|313656766|gb|GL545251.1| GENE 160 155952 - 157079 1360 375 aa, chain + ## HITS:1 COG:L52034 KEGG:ns NR:ns ## COG: L52034 COG0482 # Protein_GI_number: 15672819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Lactococcus lactis # 5 373 15 382 384 493 67.0 1e-139 MVDNSKIRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDDTDDAGVCTATEDYEDVK RVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSLD ADYIAMGHYAKTVKDANGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLANLTKPQVR EIAEKAGLATAKKKDSTGICFIGERNFKKFLSEFLPAKPGKMVTPDGNVVGQHGGLMYYT IGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGYDSPRLYATSLKASGMSFYTGNPD HDVEFDCTAKFRYRQADVGVHVKYHAATKTCDVYFDEPARAVTPGQALVLYKGEECLGGG NIDAAYQEEKQLQLV >gi|313656766|gb|GL545251.1| GENE 161 157397 - 157708 347 103 aa, chain - ## HITS:1 COG:L178933 KEGG:ns NR:ns ## COG: L178933 COG0599 # Protein_GI_number: 15673518 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Lactococcus lactis # 1 101 1 102 102 147 71.0 3e-36 MVKQTAGRDLLGDFAPKFAHLNDDVLFGEVWSDDNLSQRDRSFATVTALISMGAFEQLNY HMQKAKENGISKEEMSTLITHIAFYVGWPKAWSAFNIAKKIYQ >gi|313656766|gb|GL545251.1| GENE 162 157723 - 158121 483 132 aa, chain - ## HITS:1 COG:L178204 KEGG:ns NR:ns ## COG: L178204 COG1917 # Protein_GI_number: 15673516 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Lactococcus lactis # 4 131 8 133 133 139 53.0 9e-34 MKNNTNIFGIGKENIDFAQYFDGKSFLNRLVNPQANIPFSVANVTFEPGCRNHWHAHTDG FQILLATSGEGWYQEWGKKPRKLLPGDVVVVNQGIKHWHGAAKNSSFSHLAITQGPTEWY EPLSKHEYDNLD >gi|313656766|gb|GL545251.1| GENE 163 158225 - 159112 698 295 aa, chain + ## HITS:1 COG:L0215 KEGG:ns NR:ns ## COG: L0215 COG0583 # Protein_GI_number: 15673858 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 284 1 283 292 154 35.0 2e-37 MDTRVLRYFLTVAQTGNITEAAKKLHITQPTLSRQLQKLEQDLNQTLLDRKQKGHLVLTD AGNLLARKAEILLQLWSDTVDEVQNSNDEILGILKIGIVESRCSILVEKVIRDMQKLYPK LQFDFYSAYSDDLKSALDMMRIDCAILLEPVESKKYFQKKISIYERWGIIVGKRHPWAKR KEISPSELNETQLIISRREIVNQDLESSLGTSLNSENIKGYINLSSNINWLLETGEYATL GIEGVLKVRPNPNLVFIPLTIQKKTAHVLVWRKNSRPSAAIQAFSDMLEEKIKQV >gi|313656766|gb|GL545251.1| GENE 164 159131 - 159790 704 219 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 208 1 204 206 160 42.0 2e-39 MQIYFVRHGKTEWNLASKFQGGHGDSPLLPESYEDIKKLGNYLKGTKFRGIYASPLKRAF DTAQGVQQTMGISLPVHVEERLREFNLGDLEGMKFADAEKKYPKEIDDFWNHADLYDPSK IHGETYPEVIARGKDFAQEMAKLYPNKNDKILAVSHGGALCAIMGGLLGYPLAEIRKHGG LSNTSLTILETDDEGKTFHKVVWNETSYLGRKLGATDSL >gi|313656766|gb|GL545251.1| GENE 165 159790 - 160425 587 211 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_04125 NR:ns ## KEGG: LAC30SC_04125 # Name: not_defined # Def: TPR repeat-containing protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 207 1 207 214 215 56.0 8e-55 MSDKTAKLYQEGKTQEAIQALIKDIDHEPKNANNYLELSTYLLEQGAIDQAKKLLVQAKG LVKKPQDMDYNLAICYYMEGDFDRALALLDTIPNNDETYYQKALVFHKLGNPQKALAFAM SVSKVDNDLLELLGDIWLSLGDFARARENYLKIPKDERSGKLNFLIGVTLFGSNRQEAEQ YFTLAEKIDPDYYQTAKKQYDSLLKVVKQGK >gi|313656766|gb|GL545251.1| GENE 166 160431 - 162803 2195 790 aa, chain + ## HITS:1 COG:lin1544 KEGG:ns NR:ns ## COG: lin1544 COG0507 # Protein_GI_number: 16800612 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Listeria innocua # 6 784 21 790 798 471 37.0 1e-132 MVEFTGRLSGIIFENSEDMFKILDVEIVGELAGYDQEDIKVTGSFGDVSINSEYQFSGEL IVHKRFGLQFKAESYHQVMPHEEGSLTKYLSGDKFPGIGRKTAQTIIDKLGLNALQVLKE NPNKLEELALTQKQKDSLLSGLNSMDSYAEISLKLSQYGLRKNVINRVYHLYHGDSIEKL EKDPYALINEVSGYGFKQADYIGEQLRISFTDSRRIKGGIYQVLLNNLQEQGNTFVELKF LLTEVSELTEIPQFDSIAEAVNDLQRAEKVVVKDDVISLQNIFETEQTIAQNLARINDNK CESFSDEKLSQIIKECEKHLKIEYDETQKSAIKKALNHPLSLLTGGPGTGKTTIINGILY CLRRLEDIPAASLYSEDPPFILAAPTGRAAKRMSETTGVEAKTIHRLLGLGINSSNSDEE VELNQINGEILIIDEMSMVDMFLFKQLLSSIVGTKRVVFVGDKDQLPSVGPGNVFGDMIT ASAFPITKLTTIHRQGDDSSIITLAHSINEDQNTNLLFQKTKNYSFIPCPPAQVGRAIEQ IVNYAIKKGFAKDDIQVLSAMYHGTSGITNLNNLLQKILNPKDENSKFVESHDEKFMIGD RVLQLQNNPEKDIYNGQIGKIIGINENKSDEILVCNFDDREVKFSRKDLLDLTRAYAITI HKSQGSEFPLVILVLTMQNFVMLRRNLLYTAVTRAAKNLVLVGEQKAFLMAVNTPGNNRK TGLAKKIISLMPKLEQNKHKPDSNAKDINAKSDTEETENNGEKILTKEAIYSGQIDPMIG MQGIKLKKLD >gi|313656766|gb|GL545251.1| GENE 167 162853 - 164373 1382 506 aa, chain - ## HITS:1 COG:SPy1876 KEGG:ns NR:ns ## COG: SPy1876 COG0595 # Protein_GI_number: 15675695 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 488 72 555 560 603 59.0 1e-172 MVVSHGHEDHIGGIPFLLEKIPEIPVYATPFALALIKGKLDEHGILKTTELHEEHEDTVL NFDKLSVTFFRTTHSIPDTLGIAVHTPLGAVIFTGDFKFDLTPVMNQPAPDFQRMAKLGD EGVLALLSDSTNAEVSAFTKSERFVAKSLNNIIKGIDGRIIFATFASNLYRVSTAVEAAI ETGRKIAIFGRSMENGIQNGIDLGYLNVPKDLIVDANEINRLKPSEAMILCTGSQGEPLA ALSRIADGTHRQISIQPGDTVIFSSNPIPGNTLSVNHLINKLMEAGANVIHGKVNNVHTS GHGGQEELKMMVRLAKPKYMIPVHGEYRMQVIHTHLAQDAGVPKENTFVLGNGEVIAFSP EGSRIAGHIPAGDVFVDTSGTADVGNVVVRDRQILSEEGLVVAVATVDYKHQRVLAGPDI LSRGFVYMRESQDLISQAQKNVYHVLRTQMAKKPRPSENDIRKAIIANLQDFLYARTERR PLVLPMIIEKNNLAQKLSIVNKKSTS >gi|313656766|gb|GL545251.1| GENE 168 164319 - 164510 104 63 aa, chain - ## HITS:1 COG:BH2662 KEGG:ns NR:ns ## COG: BH2662 COG0595 # Protein_GI_number: 15615225 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Bacillus halodurans # 2 43 25 66 555 71 71.0 4e-13 MYCVQYQDEIVIMDCGIKFPEDDLLGINYVISDYSYPVKNRKKSRPWLSAMATKTILVGF HSY >gi|313656766|gb|GL545251.1| GENE 169 164582 - 164806 378 74 aa, chain - ## HITS:1 COG:SPy1875 KEGG:ns NR:ns ## COG: SPy1875 COG5503 # Protein_GI_number: 15675694 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 76 76 61 51.0 4e-10 MIYKVLYQDNKIVNPRRETTKTLFLEADSIGQARMMVEDNTPYNVELIQELTGNSLAYEK EHADFKLTTFDTDK >gi|313656766|gb|GL545251.1| GENE 170 164970 - 165524 718 184 aa, chain - ## HITS:1 COG:SP1456 KEGG:ns NR:ns ## COG: SP1456 COG0242 # Protein_GI_number: 15901306 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 183 13 202 203 183 50.0 2e-46 MILMKDIVRDGDPVLRRVADQLTFPLSEHYQKLADDMMEYLINSQDPKIAEKHQLRAGVG LAAPQVGEGVQMASLLVPNDKGEIIFKETFVNPKIVSESVRQVCLSEGEGCLSVDKVIDG YVPRPNKLTIKYFTVEGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRIDKKDPFALKDDT LVIS >gi|313656766|gb|GL545251.1| GENE 171 165757 - 167601 2083 614 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 6 610 5 609 613 854 70.0 0 MSEQRREDIRNIAIIAHVDHGKTTLVNQLLKQSDTLPEHINLEDRAMDSNDIERERGITI LSKNTAVKYHDTTINILDTPGHADFGGEVERIMHMVDGALLLVDAYEGTMPQTRFVLKKA LEAGVKPIVVINKIDRPGARPAEVLDEVLELFIELGANDEQLDFPVVYASALNGTSSYDE DLSTQKETMDPIFETIIKNIPAPIENSDQPLQFQITMLDWDDYVGRIGVGRVYRGKIKVG DQVTVMKIDGTTQNFRVTKLFGFFGLKRNEIKEAKAGDIIAISGINDIFVGETIASAENP EALPPLHIDPPTLQMDFVANDSPFAGREGDQVTPKKLEDRLMKQTRTDVSLKVEPTDQIN SWTVSGRGALHLSILVEELRREGFEMQLSRPKVIYREIDGQMCEPFEAVQVDTPDEYVGS VIDSLSQRKGEMKNMESTGNGQTRLEFLVPSRGLIGYNNEFMSQTAGYGILNHTFEAYKP VVKNWEPGRRNGALVSINQGQSTTYSLQSVEQRGILFIGAGVEVYEGMIVGQSSRERDIA VNVTKGKNLTNTRAAGKDHSASIKTPKTLTLEEAIEFLNDDEYCEVTPQSIRLRKKILNT NERQKFDKKKNRQN >gi|313656766|gb|GL545251.1| GENE 172 167702 - 168895 1215 397 aa, chain + ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 388 11 405 434 230 38.0 4e-60 MRPDKQKFLYLDYKILLPYLILCVVGIVMVYSASSDILLVNGFKPTVYGGKQLIYFIVAV IFLGYPAFNTKMRKIRSWRFIMSYLGISVFLLLILLAMKIIGGARFAVNGAVGWINLGFI SIQPLEIAKLALILYLAKILDKRANRLVAGNIWHSLSNPTIIAFAIMALVIVEPDFGGTA ILFMIVMVLYAVSGIRAGLVLTWMFILLGLVIGFVSLIIVWNPKFLQNSYQFQRLLAFAH PFQLEKTSGAQLVNSYYAIHNGGLFGVGLGNSMQKRGYLPEPYTDFIMSIISEELGSIGA CLILGLLFYLMWRIMEVGVHAQSQFNALVCFGVTTIIFTETLFNIGAVIGLLPITGVTLP FISYGGSSMFVLTAGIGLVLNISAEEKRAIMIERSVQ >gi|313656766|gb|GL545251.1| GENE 173 168892 - 169224 302 110 aa, chain + ## HITS:1 COG:no KEGG:lhv_0884 NR:ns ## KEGG: lhv_0884 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 107 1 107 114 90 45.0 2e-17 MSYNLDLENTNIPARVAIIVFLNQAQDQFKLRQFGDIVYFSKRKKYCLIYVNQNGARELT IKLNKLHFVKKAEISPTSELDFSREHEEGQINKLASEAEQILEENEEYKQ >gi|313656766|gb|GL545251.1| GENE 174 169221 - 169772 377 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 180 13 193 199 149 42 3e-34 MRIIAGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQFFDGGITLDLYGGSGALAIEAV SRGFDHAVITDINYAAVQIIKKNVALTHEEEKFEVFKMSDKVALKFLHEHDYKFDMVFLD PPYAKQKITQIMTEIDKLNLLNSKAIFVCETDDDTQLADVKGFTLTKEHHLGKTIVRIYQ KDN >gi|313656766|gb|GL545251.1| GENE 175 169774 - 170271 326 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 5 165 7 164 164 130 41 2e-28 MVKAIFPGSFDPVTNGHLETIKQASKAFDKVFVVIMTNTSKKYLFSARERAELVEDALAD LKLANVSVLTRPATLTVDVAKELQTNIIVRGLRNSEDFLYEQQISAMNKKLNPAIETIYF MTSSENSFVASSMIKEIAKFNGDVSQFLPEKAALALKRVLGSNEK >gi|313656766|gb|GL545251.1| GENE 176 170261 - 171292 399 343 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 15 338 16 343 350 158 30 9e-37 MKNKKKLNIIVATLLVLVLVYLGLSWPTNYYIEAPGDANSVSQFVSSNGKKASKNLFMVT VSERQASLGDYLWSYTNPFETRISQKDLLGNQNTSQYMQLQEWYMETSQNNAIYYAAKVA GKTPKKKFFGVYVMGLTTNSKFRNKLNIGDTIIAVDGQHFKSTKALMDYIQKQKIGQKVS ITVQRDDKSINYSGKTVPLATDKAKAAIGIQLVERSKVITNPKIKINAGSIGGPSAGLMF SLASYQLFTGHDLTHGVKVAGTGTIDNEGNVGMIGGVDKKVVAADKAGAKVFFAPSQQLP GYKKNETNYAVAVKTAKKIHSKMKIIPVATFNDALTYLKKIQK >gi|313656766|gb|GL545251.1| GENE 177 171370 - 171876 508 168 aa, chain + ## HITS:1 COG:SP0954 KEGG:ns NR:ns ## COG: SP0954 COG1555 # Protein_GI_number: 15900831 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 167 2 166 216 72 32.0 3e-13 MNFEKIKDWLIQYKVCVIAALVGVIVLFCLKVNTNSQDELISMNTASSSSASQSSLQASS VAISASNLKTNKVTCDISGAVKNGGIYTLKAGARVADLIRAAGGETAEADLSSINRAILL KDQDKVYIPVKGESISANTASNQGSSSVSNSGGEKIHLNSATVADLQN >gi|313656766|gb|GL545251.1| GENE 178 172977 - 173222 104 81 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0703 NR:ns ## KEGG: LBUL_0703 # Name: not_defined # Def: metallo-beta-lactamase superfamily hydrolase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 68 310 377 728 80 54.0 2e-14 MNIGAILSYILVLGLKVIKSESSFKQGMLLNLLLTPLLLFNFYQVNIFTVFFNILIVPYF NFVVMPLTFINIFYLINFIYL >gi|313656766|gb|GL545251.1| GENE 179 173727 - 174236 485 169 aa, chain + ## HITS:1 COG:SPy1408_2 KEGG:ns NR:ns ## COG: SPy1408_2 COG2333 # Protein_GI_number: 15675328 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Streptococcus pyogenes M1 GAS # 2 153 134 285 299 129 44.0 3e-30 MARGLLKNQAFLKRIAGKVHKSQIKELLAGDRVNEGIKFDIVYPYQAGLGKNEDSLSVTF KVNNKRWLFTGDLDQAGEEVIGQKTPMKVNYFKLGHHGSKTSSSEHFLQIIQPDLVFISA GRNNRYHHPNQETLAKLDKLAIPYLSTQRYGSISYRYGFGRDHFETFLK >gi|313656766|gb|GL545251.1| GENE 180 174250 - 175236 838 328 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 18 313 20 321 347 109 28.0 9e-24 MLISLFKNSNVQNKNLLIYGEDAFLNDYLIRDYLNNSEFKGLDLQRIDCENDGLDELLAS LTEASLFSQQKIIWVKNPIFLTGKSPKKLQANIAKLEKVFANLTLSDDIVIMQANYANLD KRKKITKLSLSAFNSVEVQFKPYEVSGVIKAIIKDEGYSIAQNTLHLLLERSDQVMDTAL SNYLKLKLIADDNKKITLESVQNNVDLSLAQNIFEILSSAFKKNYQESLERLEDQLREGQ NPVRILSVFENQLEVILSAKILLARKRSEMDIGKELGIHPYRVKLAKQTQVSVSKLKRLL LEAIKLDQGYKNGTYQGDEFIKMFLLAI >gi|313656766|gb|GL545251.1| GENE 181 175289 - 175540 396 83 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526394|ref|ZP_03956443.1| 30S ribosomal protein S20 [Lactobacillus jensenii JV-V16] # 1 83 1 83 83 157 100 2e-36 MPQIKSAIKRVKTQANANKRRAAQLSELRTAVKKFKVAQAAGAENASDLHKAAARALDKA ASKGLIHKNKANRDKSRLAKLAK >gi|313656766|gb|GL545251.1| GENE 182 175758 - 176015 430 85 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526393|ref|ZP_03956442.1| 30S ribosomal protein S15 [Lactobacillus jensenii JV-V16] # 1 85 5 89 89 170 97 2e-40 KSKKNELIKEYATHEGDTGSVEVQVAVLTEDINNLNAHLKAHKQDHHSYVGLLKKIGHRR NLLRYLAENDIERYRTLIKKLGLRR >gi|313656766|gb|GL545251.1| GENE 183 176160 - 176918 749 252 aa, chain + ## HITS:1 COG:SP0613 KEGG:ns NR:ns ## COG: SP0613 COG0595 # Protein_GI_number: 15900521 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pneumoniae TIGR4 # 5 210 3 208 553 238 57.0 6e-63 MADFDIKIMVVSGVREQGKDMFAVQVNDEIFVLDAGLKYPDSSLFGIDVVIPDMEFFDKY SDKIAGIFLTHGHADSIGALPYILRGHDIDIFGSELTIELAKLEVQRENHRRKNHLFHVI DAETEIDFRNASVSFFHTTHSIPDSLGIVVHTPAGGIVYTGDFKFDPSASEHYRTDMDRL AEIATKGVLALLSDSSNAEADFPNASEKKLAITLVKCFLMLQVELLLQLKLPTLQDCNKS LMQQRRIIEKSC >gi|313656766|gb|GL545251.1| GENE 184 176912 - 177898 919 328 aa, chain + ## HITS:1 COG:SPy1020 KEGG:ns NR:ns ## COG: SPy1020 COG0595 # Protein_GI_number: 15675021 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 302 250 552 553 301 49.0 1e-81 MLTGRGVNKIVQIALKLGYLQADSRLFIHSKELKNYKDDQLVVLETGRMGEPLQSLQKMA TNRHRMVSIHPGDLVFIATTPSHAVETMVAQTSDMVYRAGGTVTQLAYAKHTSGHATGRD LQLLISTLKPKFLIPVIGEYRLLEIHRNLAIATGMKTKDIYITKNGDCLSLQKGRFYLTD PVPGEDTMIDGSGIGDVGNIVLRDREILSDDGIFIAVATIDRKKKKIIAEPRVSSRGFVY IKANKELMNESREVIKKAILTNFEHKKFDWSELKTDVRNSLEKFLYKQTNRRPVVLPVIM EVNQNRHRAMARKKSEHELRNKKAENND >gi|313656766|gb|GL545251.1| GENE 185 178240 - 178722 332 160 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_04235 NR:ns ## KEGG: LAC30SC_04235 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 160 118 277 277 164 48.0 1e-39 MQAFKKKSVIRQKDYQSLFKLNLTNFVNFSKSILIDPSQSFALRLAICEDLVKLKMDENI PIIVLDQMTAFNPSLTPLLAKNTVYQEIISSIGDRLSKNPSILPTVLSETNLLLGTIYPK IDDFVDEPDSFSKDLVNFVLERNGGEHQEILTKIYQNISR >gi|313656766|gb|GL545251.1| GENE 186 178897 - 180087 1368 396 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 4 396 3 407 407 531 65 1e-149 MAEKEHYERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKQGLAQASDYSQIDAAPEEKER GITINTAHVEYETENRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREH ILLARQVGVEYIVVFLNKCDLVDDPELIDLVEMEVRDLLSEYDYPGDDVPVIRGSALKAL QGDPEQEKVILELMKTVDEYIPTPERQTDKPFLMPVEDVFTITGRGTVASGRIDRGQVKV GDEVEIVGLTDDVKKSVVTGLEMFHKTLDLGEAGDNVGVLLRGVDRDEVVRGQVLAQPGS IQTHKKFKGQVYVLKKDEGGRHTPFFSDYRPQFYFHTTDVTGAIELPEGTEMVMPGDNTE FTVELIKPVAVEKGTKFTIREGGRTVGAGQVTEILD >gi|313656766|gb|GL545251.1| GENE 187 180284 - 181597 1989 437 aa, chain + ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 424 427 412 56.0 1e-115 MSAKWEKTGKTTGELTFEISQEEIKLGLDQAFNRIKKNLRVPGFRKGHVSRVIFNQYYGE EALYEDALNLVLPNAYTAAVKEAKIDAVGQPKIEPVSMDKDKAWTMKATVSVKPEVELGE YKGIEVPKQNTRVYQKDIDAELDKKREQNAELVLKDDKAAKGDTVTIDYKGTIDGKAFDG GSAENYSLELGSNTFIPGFEDQLEGHKAGDEVDVVVTFPEDYGAKDLAGKEAHFATKLHE VKSKELPKLDDEFAKDVDDSVETLDELKEKIKKQLKEDKEAAAQDAIQEAAITTAVKNAK IDEIPDAMIQEDVDTQLNQYLGNMQRQGIDPQTYFKLTNTTEQQLRAQLSTDAAERVKTN LVLEAIVAKEDLKADKKEIEQEIKDLAAEYNMDEKTVRNTLSDDMLSHDIAVRKAMDLIT DSAKQVGKAQLEKDSDK >gi|313656766|gb|GL545251.1| GENE 188 181712 - 182995 251 427 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 155 421 258 460 466 101 29 1e-19 MATKYSDGVDEITCSFCGKTQAQVKKMIAGNGVYICNECVALSKEIIDDELKADSLKETK DLPKPVEIKNQLDEYVVGQDRAKKVLSVAVYNHYKRINQMDIDDSTELQKSNIALIGPTG SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIERAQRGIIY IDEIDKISKKAENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIKIDTKN ILFIVGGAFDGIESIVKSRLGKKTIGFGAESKFDDVDQDADSWNKYLTTGDLVKFGLIPE FIGRIPVISTLDKLQKADLIRILTEPKNALVKQYQKLFSIDKVDLHFSDGALEAISEQAL ERNMGARGLRTIIENAMMDTMYTIPSEQDVAKVEITRDVITKHASPRITRKEVNKDVEMD DTNEDNK >gi|313656766|gb|GL545251.1| GENE 189 182979 - 183566 589 195 aa, chain + ## HITS:1 COG:BS_ysxC KEGG:ns NR:ns ## COG: BS_ysxC COG0218 # Protein_GI_number: 16079871 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus subtilis # 1 180 1 179 195 201 54.0 6e-52 MKITSSEYSVSAVREDQYPRDVLPEIALAGRSNVGKSSLINSFLNRKNLARTSSQPGKTQ TLNFYKVNDSFYLVDVPGYGYAKVSKKQREQFGEMIQDYLETRANLEGLIIIIDARHEPT TDDIAMYNYALLLDLPILVVTTKMDKLKKSQYNKVQSNLRKHLDLNHDNVTVLTYSSETK LHLAELNKWIEDKIS >gi|313656766|gb|GL545251.1| GENE 190 183585 - 183725 174 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLTFKREDELEKMLNQFAVFPDDPKKTAKQKGKNNSKQKPDNEKE >gi|313656766|gb|GL545251.1| GENE 191 183807 - 184058 317 83 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0723 NR:ns ## KEGG: LGAS_0723 # Name: not_defined # Def: p-nitrobenzoate reductase # Organism: L.gasseri # Pathway: not_defined # 1 81 2 83 221 82 48.0 7e-15 METKQAIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKSLAKLKE LHLKNSKTDRSAAPEWPTMHRVN >gi|313656766|gb|GL545251.1| GENE 192 184080 - 184460 486 126 aa, chain + ## HITS:1 COG:mll1278 KEGG:ns NR:ns ## COG: mll1278 COG0778 # Protein_GI_number: 13471335 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Mesorhizobium loti # 14 119 119 227 234 58 33.0 3e-09 MAKLNLHRTNYLTKDELDSGWAEAQQNLYYAPAVFYLTIPQNSSNWSIYDLGAFAQTLML AATDMGLGSMVAYEFVKYPDEIRQILPIPEKEAIAVGIAVGYEAEDHINNFRSERLSLDN VLQIFD >gi|313656766|gb|GL545251.1| GENE 193 184863 - 185051 243 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855227|ref|ZP_04645546.1| ## NR: gi|238855227|ref|ZP_04645546.1| conserved domain protein [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative phage-associated protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved domain protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] putative phage-associated protein [Lactobacillus jensenii 208-1] # 1 62 1 62 62 85 100.0 1e-15 MATSEAQKRANQKWRSQHKDKQQIYNHRSTAKRFIKLYANLHDLDVLADMIKERRSELKK LG >gi|313656766|gb|GL545251.1| GENE 194 185243 - 185455 125 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKSLSSPIFLRDERLFPRYHPTCQILTTLIRCNHICPEVTLGITSQPTHFDLAALKSVF QKIQGLLTSH >gi|313656766|gb|GL545251.1| GENE 195 185485 - 186492 1042 335 aa, chain + ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 8 335 2 327 327 362 55.0 1e-100 MKVFVPAGYKTKRSLRETEEAIRDIRDIFQIELAEKLNLLRVTAPLFVKKSSGFNDNLNG VERPVAFETKEEPDEDLQIVHSLAKWKRFALKRYGFKMGEGLFTNMNAIRRDEDTDNLHS IYVDQWDWEKIISKEDRTTEFLKKTVKDIYSAMKITGKRVAKKYGDIFEFPEDIYFVTSE ELEARWPELTAKEREDRICEEHKAVFVMHIGGKLPLTGKPHDLRAPDYDDWKLNGDLLFW NPVLKCAFEVSSMGIRVDEEALKRQLTLTDTLDRLELPFHKMLVNGELPYTIGGGIGQSR FCMLLLKKAHIGEVQVSVWPEETVKECEAGGIQLL >gi|313656766|gb|GL545251.1| GENE 196 186542 - 188950 1783 802 aa, chain + ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 12 764 5 764 775 687 50.0 0 MAIKQDVDLDIGLTTPEVSKRIKQGLVNEATDNQFKSNWQIIAENTFTYFNLIFAILAGL LIVVGSYRDLSFLPVIIANTIIGIVQEIRAKHVLSKLTVMNEAEVLVIRDGKKIQQPIEK LVQDDVVILKTGDQVPADGRVLAGEARVNEALLTGEADEIKKTIGSELMSGSFLVSGEIY MQLEKVGNESYIAKLMLEAKAMKSVEQSEMVRSINKIIKWVGIIIIPLGIALFSQSYFIN QAGLADSITSMEAAIIGMIPEGLYLLTTIALAMAATRLARRQVMLHNMKSVETLARVNVL CVDKTGTITEPVMSVQKAITSSNVTSSDLNKYLADFSGNMPVDNETMKAVSEKFKTRLFQ KAKQIIPFTSVNKYSAAVFEGYSLVLGAPEMVLRTEFEKYLPEFQSYVESGYRVVVFGKY PKELSESTPLTEAVAVLGYILINNPIRKEAPATFKYFAKQGVDIKVISGDNPVTVSRVAK EAGISNSEKYVDLSKFDGEYKDAVKEYTVFGRVKPDQKKKLILALKEVGKTVAMTGDGVN DILAMKEADCSIAMASGNSAAVQASQVVLLDSNFAKMPDVVNEGRRVVNNIERSASLFLV KNIFSFLMSIISLMLTVNYPLRPSQITLISAFTIGLPSFLLALESNHNIIRGNFIANVLS KSIPGGLTDMLAVWVLIAANMALDLGHRDLSTTATMVLIAVGMMVLYHISEPLNQFRLGV MVISFLTILVSIAFFHHFFALTMISGRSIFLLVVLFFAEVSIFRWLSAIADGMAEVGATL VQNGRDTTFAQVKAAYKRGKNE >gi|313656766|gb|GL545251.1| GENE 197 189060 - 189767 708 235 aa, chain - ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 1 234 41 275 275 285 64.0 6e-77 MMAPGYFYTVLPFLKKFYKNDELVDMMKMHSQFFNTNAFTGPFIIGMDLAIEEHQGYKAK ETIAGIKTGLMGPLAGVGDTIFGVIIPTICGSIGAYMGLKGNALGAIIWLLVNIFILFAR FAILPMGYYQGEKLINSAEGKLNAVTDSAILLGVTVVGALIPTVIKANVPFVFSAGKVTL KLQTVLNQIMPSLIPVLLVAFVYWLLGRKKMTSTKVILFVLFLGIALSYFHILGA >gi|313656766|gb|GL545251.1| GENE 198 189849 - 190631 882 260 aa, chain - ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 2 260 3 267 267 272 61.0 5e-73 MIAWWQIILLTALAFWMILDQLTLVTINSPLLIGMISGIIMGDIKTGLIVGSTLQLMVLG VSTYGGASMPDFMTGAIVGTVYAVLTNKGTQFAIGLAVPVGLLMVQLDVLARFFNTIFQH KMDQAIKAGNTKIASRNAYLGFLTWGLSRAIPVFILLVIGNDIVKTILRIVPTWLTDGLK VAGGILPVVGIAILLRYLPTKKFISYLIIGFLAAAYLKMPMLGVALLGAALAILNYKREN TPTMQVNTKSYENAEGEYED >gi|313656766|gb|GL545251.1| GENE 199 190631 - 191539 965 302 aa, chain - ## HITS:1 COG:lin0021 KEGG:ns NR:ns ## COG: lin0021 COG3444 # Protein_GI_number: 16799100 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 144 296 9 161 162 189 62.0 5e-48 MPNLLLISHGSYAKATLNSCEMILGKLNNVKAIEFKQTMNQDDLLEEIEAIAKTFTKLDA ILVDFTGGTPANTAIRFQAKHPEVKIYTGLSFSLLLAVASGTPFSEAYKQVAQTSGLLGE QKTEEKIKTNVSTKNSPRKTAMFVRIDERLIHGQVATMWTNALKLTRLMVIDDQIVKSSI QKTALKTACPNGIHLSILTAAGAAKRINNNQYIGQTVLILVKKPSILKQLVDLGVKLPEI NVGNMSTKEGSHQVAKSVAVTKDDINDFKYLAKKGLTIYHQMIPSEAREDFINLLKTNGG QN >gi|313656766|gb|GL545251.1| GENE 200 191837 - 192646 592 269 aa, chain + ## HITS:1 COG:alr1528 KEGG:ns NR:ns ## COG: alr1528 COG2746 # Protein_GI_number: 17229020 # Func_class: V Defense mechanisms # Function: Aminoglycoside N3'-acetyltransferase # Organism: Nostoc sp. PCC 7120 # 12 254 17 272 274 140 32.0 3e-33 MGEDRDLVYSDKDLVQFLSEMGICSTDTLLVNLKLSALGIFPGKEQALFSALKLLVKDGN IVLPSFSLHLKEPRFKSDLKDKIMKKMPAFNEEATPVSGLDPFSEYFRMQKNVLRDNHPI YSFAAWGKDKEEIVKPHTFDLPFGKQGVLGRLEKLNAKVVCLGTNFETCLAPYLAESEIS RPLIQEKAPVLIAGEKIWISFNNVELNKYHDYEDLGTQFLQKYPVKIANLPAGQILVFNL QEFVCFARDWYQEKDCVHLLNAGWDGPEV >gi|313656766|gb|GL545251.1| GENE 201 192853 - 193791 944 312 aa, chain - ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 2 310 3 313 313 242 41.0 7e-64 MKNIYFNHDGNTDDLVSLLLLLQAPDINLIGVSAIDGDGDVVASCEASRKIIDRFNTFNH KLEVAMSNSRAHHQFPEEWRQSTFTFNSFPILNEHGKINTPAAKNPAHIDMAKKIMAQDE RTTVIMTGPITDLARALDYEPKLANKIDKLYWMGGSLDGHGNVFVPYYDTTQEWNAFWDP EAVERVWNSDIDIQMVGLESTEEIPLNDELKQHFASLRRYPAMDLIGLGYSLIISSQPGN QYYLWDVLTTLSALYPDLVETRKAKSYVLTEGAAAGRLVESEKGRPMTLVTKADKDAFFK KFDELALSANFK >gi|313656766|gb|GL545251.1| GENE 202 193861 - 195240 1331 459 aa, chain - ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 2 459 3 463 463 446 52.0 1e-125 MNIFRKESINKYLAQDHKFSKTLTAKDLISLGVGAVIGTGIFILPGTVAANYAGPGVTLS FLLAALVCVLSAMSYAEFSSTMPVAGSAYSYGNIIYGEIIGWILGWALILEYMLAVAAVA AGWSSYFQSFLAPFNIKLPAAFVSSFNPSKGTYIDIIAIIVVLLITFLLSHGMKDSAKIN NFAVIVKIAIIILFIIVGANFIKLTNYQPFLPYHFSGVIKGATTVFFAFLGFDCVSSSAA EVKNPQKNMPLGIIGTLLIATLFYMGVSIVLTGMVHYKSLDVANPVAFALQFAHQDWIAQ LLSFGALVGMATMMLTMIYASSRLVYAMARDGLLPQSLAKLSSKNKIPQISLWVVAIIIS LGAGVFSVDQLTSLVNFGTLLAFTFVSFGILPLRKRKDLPNNGYKMPGYPVLPILSGLIC LYLLTQLNEDVYIMAIIWFSLGIIIYFLYGYKHSSLNKK >gi|313656766|gb|GL545251.1| GENE 203 195378 - 195980 250 200 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 3 168 6 166 199 100 32 2e-19 MTEWMINLINQFGFWAILFLIALENIFPPIPSEVILSFGGFLTLHTKIALWEIVLASTIG SVLGALILYYVGSLFTEARLKKLVNNKFIKILGFKEDDVSKTIAWFNKHGKGAIFYGRFV PIIRSLISIPAGIAQVKLSLFVSLTFLGSLIWNTVLASLGFYFGSKWDIVVKIIDDYAIL CAGLLVIAFGIACIYWYKKE >gi|313656766|gb|GL545251.1| GENE 204 196079 - 197044 685 321 aa, chain + ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 8 321 1 311 603 313 49.0 3e-85 MYKGVNFLANQLIENKLKLLPEQPGCYLMKNINGTVIYVGKSKNLKNRVRSYFKSKQVGR RAELVKEIADFDIITVTSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITNEKDPQT RLTSIVHKDNGYYFGPYPNVYAAQATLRFIQKVWPLRRCSGHQGRPCLYYHMGQCLGACF QEVPRSKYEAQIAKIKRFLNGDIGQVKQELTEKMQLASSNLEFERAAEIRDQLRYIEQTV EKQKIISNDHTQRDIFNFYVDKSWISVQIFFLRQAKLLRRETKMFPLMDLSEPKDEFMSF IVQFYNQKIVFYLKKFLFLKD >gi|313656766|gb|GL545251.1| GENE 205 197122 - 197901 778 259 aa, chain + ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 1 255 341 586 603 264 54.0 1e-70 MAKDNAKLKLDEKFRLLELGNRKTKGAQAEIFKALGLPYGSIIESFDHSHIQGTDPVSAC VVFKDGEPFKTAYRKYKLKGEVEHQNGADEVGNTREVVRRRYSRMLKEHTRLPDLILMDG GQIQVDACLDVLRNELNCDIPVAGMVKDNHHHTNHLIFGDPINGKPLELIPMNPKSEGFY LMTRIQDEVHRFAITFHRQTHAKNSLSSKLDGIKGIGPKSRNKLLKKFGSLKKIKDASIE ELQDAGLTLPQAQSVKLTL >gi|313656766|gb|GL545251.1| GENE 206 197985 - 199283 1841 432 aa, chain + ## HITS:1 COG:SPy1333 KEGG:ns NR:ns ## COG: SPy1333 COG0536 # Protein_GI_number: 15675273 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 1 431 1 436 437 435 60.0 1e-122 MPTFVDQTKIEVQAGKGGDGMVAFRHEKYVPNGGPAGGDGGRGGSIIFVADSGLRTLMDF RYRRKFKADNGENGRIKSQYGRGAKDLYLKVPVGTVVSDFFTGEVIGDMTKKGQELVVAK GGRGGRGNIHFATSVNTAPEIAENGEPGEFRTLKLELKVLADVGLVGFPSVGKSTLLSVV TKAKPKIAAYEFTTLTPNLGMVVLNDGRDFSMADLPGLIEGASQGVGLGIQFLRHVERTK VILHLVSMDPNNGRDAVEDYKIIRKELSNYTADLTKKREIIVASQMDIPGSEEKFTEFKQ GLEDLQVDEPIFKISSVTHQGLEPLMNKAADLVAEVEASQEVEEVTTEEKNYMFKADTND SFKVERIGEHEFVVTGAKIERLVQRTNIEHQDGIMLLARKLKNMGVDDALRAKGAVDGDD VTIGDISFEFVQ >gi|313656766|gb|GL545251.1| GENE 207 199302 - 201218 1748 638 aa, chain + ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 6 632 3 600 605 376 37.0 1e-104 MQRKNRFIKGYSGLRALAVIGVILYHFDPNTFIGGYLGVPIFFVLSGYLVTDHILASYEE TGYYDNKRFYLSRLKRLYPQLVTVLWASGAYMLMFQQQTLAKFNQIVTTNLFNVYNFWQI ANGQSYFERFAGNVSPFTHLWTMSIEGQFYIFWPLIMMVLIKFCKTRYRAFWIIIGFSIL SALEMAILYQPNVDTSRIYYGTDTRFFALGLGAALAFVWPIKHLKREINKTDWIILDITG TVSLIGMLWLFLSRIMDPQAAFAYRGGMFLFSLFTTIFVAIIAHPASHWNQIFTNRIFDW IGSRSYAIYLYQFPVMIFFEAKFTDMANHAFLYHLIELILILGLAELTYHFIEKPFSKIS FESIRVFIAHFKDSEKNGHLRIASGVSVLILILGTIAVIKAPDVKGVNANKSQLAERIKK NRASQKKSNKQLIDKFKKTKKKENKSKAFIEAQQSAKNKPVNKDFEKYGISQIDLQLAQK IHVTAIGDSVMAGASDMLKKLMPNALIDAAVSRQLVPTIGLFNQYKNQGALAENVLIGLG TNGPFSMDDINHLMEIIGPNRQVFWISVHVPSRQWQGQVNELILRASQKYKNLSVIDWYS YSANHNNWFYGDQTHPNVEGSKYYSTYITKEILKKAKF >gi|313656766|gb|GL545251.1| GENE 208 201234 - 202163 840 309 aa, chain + ## HITS:1 COG:SPy0924 KEGG:ns NR:ns ## COG: SPy0924 COG1234 # Protein_GI_number: 15674944 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Streptococcus pyogenes M1 GAS # 1 301 1 305 309 332 54.0 7e-91 MEIQFLGTGAGQPSKQRNVSSLALKLLDELNEIWLFDVGEATQHQILRTNIRPRKITKIF ISHNHGDHIFGLPGLLSTRSFQGEVGPLTIYGPAGLEQFVTTALRISKTKVSYPIHFVEL KDDQKIFENSEFSVYCKKLDHRVASFGFRVVEKSHPGVLLMDKLAPYHLPNGPILGQLKA GKVVELEDGRVLNGKDFLGPEKKGRIVTIIYDTRITPSIAELAQDADVLVHESTFAGPEG KMAKAYYHSTATQAAEIAKKANVKRLFLTHVSARYLGAKAHILEKQAQKVFPNTVLVNDL DVFDIPMRG >gi|313656766|gb|GL545251.1| GENE 209 202167 - 202961 998 264 aa, chain + ## HITS:1 COG:BS_yqjQ KEGG:ns NR:ns ## COG: BS_yqjQ COG0300 # Protein_GI_number: 16079435 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Bacillus subtilis # 8 257 7 252 259 209 44.0 4e-54 MSNSLRNKVVVITGASSGLGRSIALQSAERGANLILIARREEKLLEVAAEAKELSGAEVW VYPTDMGKANQIEDTFKKIIVAVKHIDFLVNAAGFGDFDDFFDQNPQLITNMFQVNVLGL IYFTRLIARVMIDQKSGQVINFGSMAGKIPTTKSAVYSSTKAAVIQFSNVLRLELKPFGV KVMTVNPGPVYTNFFNRADHTGDYVHNVQSFMLDPDDVAWQVIHYFGSDKRELNLPLSLA VMAKLYNLFPAAGDYLSLILGSRK >gi|313656766|gb|GL545251.1| GENE 210 202967 - 203242 283 91 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0876 NR:ns ## KEGG: LGAS_0876 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 48 1 48 108 63 68.0 4e-09 MNKQKNLVIGLAVSLLLIIFVLLNTEPVTINFLVVKPKLPLIVVLVIMAFLGALVSWLMG EKSHEEQKRSWGLFKKKPTRRLMNKLDLYVI >gi|313656766|gb|GL545251.1| GENE 211 203329 - 203514 321 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526363|ref|ZP_03956412.1| 50S ribosomal protein L32 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 128 100 9e-28 MAVPARKTSKQKKRSRRGHIKLTVPAMHYDATTGEYRLSHRVSPNGYYKGRQVVKKANNN D >gi|313656766|gb|GL545251.1| GENE 212 203581 - 205146 1747 521 aa, chain + ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 505 1 501 519 356 37.0 7e-98 MKLVFLHTSDTHGFLLPTDYQDKHDYEAPISLSRVSTAIKAQREKWGADKVVVTDAGDCL QGSPLASFCHKDESYERLDNFTAAYNEIGYDGRCLGNHDFNFGQDYLKHYIKKNTASFVN DNILDEKTDNPAFGQEYKIIERQDIKIGLLGITTQYVPHWEPEEHIRGLKFVSAFDQIKK LAPKLKKDVDILAVMYHGGFESDPVTGVATEPHNGENEGYKILKEIPEVDVFLTGHQHRR LNLVVDNTAIVQPGYRGECVAQVVIDLDKTSDGIKINSLETSLIETKDYEPDPAIVKDIT DVDRQAQAWLDQPIAHLSEPAPIKSAFEGRTKGAPFINLLQQMQIYFTGADISATAVMSE KARGFTNQTVTLREVILNYPYANQLCKVRLTGKELKEILEHTATFLEKDNEGNINFIDRY IKPKPQLYHFDVFYPLRYEVDLSKPHGHRVVELTLHGKPIEDEHIYHLAVNNYRAMGGGF YPAYSMDKIEMMLDKDYVQMFTEYLTSGEVKVDTKQYYKFY >gi|313656766|gb|GL545251.1| GENE 213 205249 - 205581 234 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855209|ref|ZP_04645528.1| ## NR: gi|238855209|ref|ZP_04645528.1| hypothetical protein LACJE0001_1189 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_0281 [Lactobacillus jensenii 208-1] 1,4-alpha-glucan-branching enzyme [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1189 [Lactobacillus jensenii 269-3] 1,4-alpha-glucan-branching enzyme [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_0281 [Lactobacillus jensenii 208-1] # 1 110 1 110 110 204 100.0 1e-51 MKRVTLFNHKHPFITPAIIFWSIVFLMFFGPKILTSIKSAYFNYQITQVVSEKKPQAKAL DIVQEDTETNVYYQTYEYNDRKYILACFKKSGKRHFDWYSLKTGKIEHLK >gi|313656766|gb|GL545251.1| GENE 214 205590 - 205877 233 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855208|ref|ZP_04645527.1| ## NR: gi|238855208|ref|ZP_04645527.1| hypothetical protein LACJE0001_1188 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00534 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1188 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00534 [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 95 1 95 95 154 100.0 2e-36 MKNFGQKHPLMVWILTLLFNLLILVGIYLSYLSFQEEHDTKVAYAEIELALKKQNINTHE IKVAKPFVRNQRAFTNTIWYTLAFTFKGQKYEATY >gi|313656766|gb|GL545251.1| GENE 215 206025 - 206228 314 67 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0879 NR:ns ## KEGG: LGAS_0879 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 66 42 107 107 85 66.0 7e-16 MRYIISAIWSTIFMSIIGFIAAALTETQFNPMQAIRVGIVFGLLFAVIIPFIAAKSYKGK TKYSKML >gi|313656766|gb|GL545251.1| GENE 216 206340 - 207719 1547 459 aa, chain + ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 6 456 6 445 1108 324 42.0 2e-88 MQVSGLQTLSSFSLLKSPILVDELVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKANLN PLLGMTIRLNGMIDQAHRYDLISIAKNNEGYKNLLRLSSAINLKTDNGDERKVLTLKQVA KYLSDQIFIIPANVTSELRYLSENNEKLGSDYLRELQKIIPSSSDLYLGVYASKNQPYIN YVKALAAQFNLPLAAAEDVQYLQASDQFLVKTLRAIEQGQKLVDTSSLALQKGSHYLRSS GELVAAYNENGIIEALHNAAKIADECKAEVIFTQPELPRYRQNFAPSSKIYLRQLVQKGL ENRFKGQNIPEIYQKRLDYELKIINQMGFDDYFLIVWDVINYAHSVDITTGPGRGSAAGS LVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRRDEIIKYMFEKYGMDHAA QILTFGTLAAKQALRDCARVFGLTTVQASKFTHAIPFSK >gi|313656766|gb|GL545251.1| GENE 217 207812 - 208159 154 115 aa, chain + ## HITS:1 COG:BS_dnaE KEGG:ns NR:ns ## COG: BS_dnaE COG0587 # Protein_GI_number: 16079975 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Bacillus subtilis # 2 76 481 555 1115 81 49.0 4e-16 MRLEGIPRHASIHAAGLVISDKSIAQIAGLQAGTLGIPVTQQTKAHVEELGLLKIDFLGL RNLTILGETVELLAKDGISLIQNRFPLMMLKLYNYFKRDKPTLYSNLNHKELKMS >gi|313656766|gb|GL545251.1| GENE 218 208165 - 209457 953 430 aa, chain + ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 408 599 1018 1108 306 40.0 5e-83 MHPDSFEDVVAVNALYRPGPIQNIDHFINRKQGKEAITYPDSSLAQLLKPTYGILVYQEQ VMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQEREKFITGAVKNGHPQATASKVYAYIE QFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAFFTALLNSVSANRIKAGEYITQAQEVGV KILPPDINQSQTDYSLLNGQIQVGLKAIKGIRVDFLKNIANLPKNFSSLADFLRKIDAKF LSEQTIAAMIKAGCFDKIDKNRKMLLLNCKEIVENIKFTGQNETLSEGLGGIRLEQAPAP NANEKATMEEEVLGFSTTKTPILVVQKYAERFNAQTLNSFTVNETGIAVGKLIKLKLIRT KKGDTMAFSTFRDASSEQEITIFPGIYSKISDILKEGQIYLLGIKTQSDRYDAGKVQYML TNLKLVNFTE >gi|313656766|gb|GL545251.1| GENE 219 209626 - 210585 1263 319 aa, chain + ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 318 1 318 319 382 61.0 1e-106 MKRIGILTSGGDAPGMNAAVRAVARTAMANGIEVFGIRYGFAGLVAGDIFPMTSDSVANI LTRGGTFLYTARYPEFAQEEGQLRGIEQLKKHGIEALVVIGGDGSYHGALALTKRGFNSI GLPGTIDNDIPFTDLTIGFDTACTTAADAIDKIRDTASSHQRVFVINVMGRDCGDIAMRV GVASGADAIVVPEKPYSIEAIANKLKKSFANGKDHGIVIVAEGVMSSDDFLKELLKYGDF DARTEVLGHMQRGGEPTVSDRVLASKMGSYAVKLLMEGKGGLAVGIEDNHLCTHDIVDLF DSHHVGDYSLLAMNDDLSR >gi|313656766|gb|GL545251.1| GENE 220 210617 - 212386 2275 589 aa, chain + ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 479 1 475 475 528 59.0 1e-149 MKKTKIVSTLGPASNDLETIIKLIEAGANVFRFNFSHGDHEEHLSRMKLVREAEKKTGKL VGIMLDTKGAEIRTTEQEEGKFTIHTGETMRISMDATKKGNKDKIYVTYPGLYDDTHVGG HVLIDDGKVDLLITEKDEANKELVTKAQNTGLIGSKKGVNAPGVEIRLPGITEKDTDDIN FGLQHGINFISASFVRKAQDVLDIRQLCENAGQDHVKIFPKIESQEGIDNIDSILQVSDG LMVARGDMGVEIPFMNVPFVQKTLIKKANALGKPVITATQMLDSMQENPRPTRAEVTDVA NAVLDGTDATMLSGESANGLYPVQSVQAMHDIDVRTEKQIAERNTLALQRFEEYQGSNVT EAIGESVVRTAEELGVKTIITATQSGYTARMISKYRPNADIVALTFDEKIQHSLGIVWGV QPLLTEKPTSTDDMFEKAAKLAKENGFVKDGDLVIIVAGVPVGESGTTNLMKLELIGSKL VKGLGVGTGSVIGKAVVANSADEANNKVEDGDILVAKTTDKDYLPAIKKASGLVVEASGL TSHAAVVGLSLGIPVVVGATDATDKIADNTTITIDARRGAVYQGEAANL >gi|313656766|gb|GL545251.1| GENE 221 212512 - 213390 467 292 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 1 276 1 272 285 184 36 1e-44 MLGTIQKGKVIDKNDEAYYVQVDGVTYELNKLEVTQEQMPQLGDIVQGFIYDNKNHKKQM TQFYPFAMPDQYGWSKVTEIRRDLGVFVDIGLPDKDMVISLDDLPLDKAKWPRIGDRLLV TLETDHKDRIWAKLADENVFEQLSSKFPQNMKNKNLLVTVYATRPVGAFVLTSDFYLGFI HESQMMTPLRLGEQIKARVVGISKYGRLNLSVLPRAFEEIDEDSQMILMSLRREATKSLP FYDKSDAQDIKTHFGISKSAFKRAIGRLLKQDLIIEDKDAGMITLVDKNEEE >gi|313656766|gb|GL545251.1| GENE 222 213377 - 214279 665 300 aa, chain + ## HITS:1 COG:lin2069 KEGG:ns NR:ns ## COG: lin2069 COG4974 # Protein_GI_number: 16801135 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 7 300 3 297 297 267 47.0 2e-71 MKKNNLDQVADFLRFCSLERGLSKNTVNSYQLDLNQFVEYLDKEKISDWPEDPLVIDSYL AKQRDEGKKTSTISRGITTLRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVS ELLAQPNLNTATGLRDRAILELLYATGMRVSELINLKETDLHTDLKIIRVLGKGSKERLV PVTDFALNWVDKYLKEVRDPALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLARID KDITPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYLKTHPRA >gi|313656766|gb|GL545251.1| GENE 223 214282 - 214623 351 113 aa, chain + ## HITS:1 COG:no KEGG:LBA0960 NR:ns ## KEGG: LBA0960 # Name: ribT # Def: reductase # Organism: L.acidophilus # Pathway: not_defined # 1 112 1 111 120 128 58.0 9e-29 MLVKYKKDYEKIAMGLLSYLPDLRNLKNLQEEMSLYDDNSDEFFLYLFRDKDSDLIGTVG IQLLEHFVLIRYLSLAPGFRDRKYEQAIMNDLHDEFPKKKLTALPNYSYLFKD >gi|313656766|gb|GL545251.1| GENE 224 214626 - 215354 615 242 aa, chain + ## HITS:1 COG:lin2065 KEGG:ns NR:ns ## COG: lin2065 COG1354 # Protein_GI_number: 16801131 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 239 5 242 249 127 38.0 1e-29 MTENLKVELPNFEGPLDLLLHLIRSQEIDIYDIPIAEITRQYLNYLEKMKELNLQLAGEY FVMASTLLRIKSQYLLPKNDFVELEQEPEIDPRQELVEQLVQYSVFKKISKYLKQRNDSV PVTVSKEPSAGQAKTISPLPLGQLSESELANTFSLLIRRYKLRKPESATVKIKYSSVSDM TKMLEEKFLQVAEISFFSCIQKIKTLDDVISLFLAILEMSKNKKIRVSQGREYGDLTIER ID >gi|313656766|gb|GL545251.1| GENE 225 215358 - 215948 597 196 aa, chain + ## HITS:1 COG:SPy0367 KEGG:ns NR:ns ## COG: SPy0367 COG1386 # Protein_GI_number: 15674517 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pyogenes M1 GAS # 3 188 2 183 183 143 43.0 2e-34 MATKLAELESLLYLAGDTGVEQSNLCQLLEVKAPALRELAKKLTQKLSEDKNSGLQISLI KDTYKMTTSYDVAEVVEKYYQKDLSKTLSQSALEILAIVAYRQPITRIEIDEIRGVNSAG AIQTLIWRGLVKTSGKKDVPGHPNLYVTTDYFLQYFGYESLADLPVIEDFENESIDEKGQ VDLFKAKDSNNPQSLD >gi|313656766|gb|GL545251.1| GENE 226 215959 - 216672 737 237 aa, chain + ## HITS:1 COG:BS_ypuL KEGG:ns NR:ns ## COG: BS_ypuL COG1187 # Protein_GI_number: 16079373 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Bacillus subtilis # 3 226 2 225 229 263 62.0 2e-70 MAERLQKLIAQAGIASRRKAEKLITEGRVAVNGKIVTELGTKVESSASIEVDGLPIQKES KHTYLLYKPRGVISSVKDDKGRKTVLDFFEESPYRLYPVGRLDYDTSGLLLITNDGELAN KLMHPRHMVDKVYVAKIKGFLTPEEIHSLKHGVRIDGKKSAPAKVKIISTNREKGTSIVQ LTIHEGHYHQVKRMFKAVGHLVDKLSRERYAFLTLKSLTAGKYRELTREEVAKLKSM >gi|313656766|gb|GL545251.1| GENE 227 216879 - 217451 544 190 aa, chain + ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 7 166 5 166 203 88 36.0 7e-18 MSESRSSLAKTLAAVMIGVIAFVVMKFEFPIIPLFPFLKMDFSDVIILIGSFLFGPVSGI GMAFIKCFLSLALSGFNILSLVGQLAAFIASVCYIVPLYMISKKNENKFVMQVAAVAVGT ICLTVAMSLANIWLLMPMYAKFANFNFPATYILYGVVPFNVAKGIINGILAILVIKFVIP QLENFASKRF >gi|313656766|gb|GL545251.1| GENE 228 217544 - 218062 471 172 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855196|ref|ZP_04645515.1| ## NR: gi|238855196|ref|ZP_04645515.1| LysM domain protein [Lactobacillus jensenii 269-3] LysM domain protein [Lactobacillus jensenii 208-1] LysM domain protein [Lactobacillus jensenii 269-3] LysM domain protein [Lactobacillus jensenii 208-1] # 1 172 1 172 172 157 100.0 3e-37 MNNNSSNNGPYKHFKRPEQGRVQQTKPNKAHHFIKWVIGLVIVVLVAVPVYLMVNHKSSS SQVVTPAKVKTSALSSTSSKSKKIKMVKQSSKSSSSSSASSVESKASSSSQVAATSSVAS SSSSEVRTYVIQEGDSLSSIAAAHGMSVDTLASLNNITDATSIRAGETLRLN >gi|313656766|gb|GL545251.1| GENE 229 218107 - 218772 236 221 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 3 211 37 279 863 95 29 7e-18 MQVAIDGPASAGKSTVAKIIAKKLGFIYIDTGAMYRACTLIAKKEHIDYGDEARILEAIN QNKIEFKSEAGEQKVYVAGEDVSLAIRTPEITENVSQVSALKGVREKMVELQREMAGSTN VIMDGRDIGTTVLPDAELKIFLVASVHSRAKRRLLDYAEKGIHEDLAKIEHDIAERDYKD SHRAISPLKKADDAVEVDTTNMSIDEVVDDILAKINAKMAK >gi|313656766|gb|GL545251.1| GENE 230 218867 - 220075 2007 402 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855194|ref|ZP_04645513.1| putative ribosomal protein S1 [Lactobacillus jensenii 269-3] # 1 402 1 402 402 777 100 0.0 MSDNSNQFLDALKEMQGVEVGNIVDVEVLSVEDGQIAVGVQNAGVEGVITRREFTQDRNA DLHDLVKPGDTFKALVLRRAGGDKENGEFFFSVTRLKEREAFDKLEKDYEAGNAIEGTVT SSVRGGLIVNVGTRGFLPASLISNHFVSDLKPYIGKTIKVKITEIDPNKNRLILSHKELI EEEREEAFETVASQLVAGDIVEGKVSRLTNFGAFVDVGGVDGLVHISEISYKHIDKPSDV LKTGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSELSEGEVVEGEVKSLTSFGAFV EVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLNINPDEKRISLSIKQAQPAAEG EGNNARRSASRNDSVAKKYMSDNNDNGFALGDIIGDQLKDRQ >gi|313656766|gb|GL545251.1| GENE 231 220153 - 221463 1576 436 aa, chain + ## HITS:1 COG:SP1709 KEGG:ns NR:ns ## COG: SP1709 COG1160 # Protein_GI_number: 15901543 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 1 436 1 436 436 543 61.0 1e-154 MALPTVAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGG ITWEGGRIEDEIRAQADIAMEEADVIVMITSVALHLTDLDERIARILYRSSKPVLLAVNK ADNPEQRADIYDFYSLGLGDPIPISSTHGTGIGDLLDAIVENFPPEADTKDEDEIAFSVI GRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAGIRRRGKVY EKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMLIVVNKWDLPK KDSNSAKDFTRVIREEFQYLDYAPIVFVSAKTGKNLEQLPDLIKEVAENQSQRIQSSVLN DMLIEASKLVPSPLIKGKRLRVYYMTQVAVQPPTFVVFVNDPELMHFSYKRFLINQLRDN FDFTGTPIKILPRKRK >gi|313656766|gb|GL545251.1| GENE 232 221683 - 221958 542 91 aa, chain + ## HITS:1 COG:SA1305 KEGG:ns NR:ns ## COG: SA1305 COG0776 # Protein_GI_number: 15927054 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Staphylococcus aureus N315 # 3 91 2 90 90 105 75.0 3e-23 MANKAELVAEVAAKTKLTKKDVAAAVDAIFASIQEDLAKGEKVQLIGFGTFEVRNRAARK GRNPQTGVEIEIPASKVPAFKPGKALKDAVK >gi|313656766|gb|GL545251.1| GENE 233 222035 - 222940 678 301 aa, chain - ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 286 130 420 428 167 34.0 3e-41 MTSIARENNLSVNTVQRVLASCSHRFIDNYNYLPEHLAFDEFKGVDKKLHFICLDGQKHE VVQILRNRYKKSLLKYFGKFSPSARANVKTVSMDLNFYYQNIVRACFPNAEIIIDRFHMV QMLTRSFNSLRVLVMKSFDKRARQYQLLKSPWKLYLKSFVDLDKIHPHYNWHFKDYLTQE QVVMEGISCDPRLDNAYNLMQDFMAALKARDTNSLKEIINSKAEVGTLMHKTLLTFKHNL RAVLNGARFSYSNGCLEGFNRKIKQIERTAYGYSNYINLLTRIRLEENKVKEKEPSNLYI A >gi|313656766|gb|GL545251.1| GENE 234 222951 - 223298 99 115 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0944 NR:ns ## KEGG: LDBND_0944 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 112 1 113 424 156 68.0 3e-37 MSSYNDCIKFSLDIQDPNITFNAHFFKLINDIKYKVFQATLIQPACPFCGSVNLIHNGHL QTNIRFITSNASSPVIIRLNKQRVLCRDCNTRSMAKSKLVNKYCSISNPASFCFN >gi|313656766|gb|GL545251.1| GENE 235 223521 - 224771 1436 416 aa, chain + ## HITS:1 COG:lin2036 KEGG:ns NR:ns ## COG: lin2036 COG0457 # Protein_GI_number: 16801102 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Listeria innocua # 1 413 1 417 417 175 31.0 2e-43 MSYSEQLLDAIEKHDFSQNNILLKKALDSDSSELLAALAENLTDMGFSDMAKDVYRALIA KNPEEDLFKVYLAEILLNDGQDDDALSLLYSIDENSDSYLESLLVQADYYQSLGLLETAQ AKLQEAHELAPKEDAIIFGLAELAYSTGKNELALHYYQDLATRQKHFGEINLRERIFASL AKLGRYEEASEIIKQYGQDFIDIDTRYEAGLVLLSTKDYKKAIEYLTGVLEQANDYVNAY PLLAQAYEANGDNEKALETAQTGLTYNEYDETLYALIGRVAANSTKYELAVDMLKKGLTF APENMDLRVQLSNLYLYLKKDEENLHLFQEIDDENLEPQARWNIAVSLYHLEKYQESRKE FLLAYPNLQNNAEFLKDMIRLFNIDGERGVLKDLLQKYLKLIPDDEEMLDLYDELV >gi|313656766|gb|GL545251.1| GENE 236 225009 - 226187 1093 392 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 237 226377 - 245348 25823 6323 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0942 NR:ns ## KEGG: LGAS_0942 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 4068 6057 931 2702 2833 295 25.0 7e-77 MGVSKNNFRNKMEQSSRQVQHFGFRKFSAGLTSVLLSTSLYFGFMGSGAQATTTPLSQSS SESTEQTSSASSSSARSELNKEIVSSSTSSSVKKADKTDLQKLYDEVIKSEVKTQLASQL TSVKSILDNDNALQTEVDTALANLKQAYIKALSDNAKKQEQAQEIKTSEAGATKQTQETQ LVNNSLNVVKVKTQDALSVADLTTSLIAETPTSANTADTTGADTETISTSESTPNGIEQV ANQSATTAVTNANEVSTSGDQTLNRTKREANTNFVVTDSTNTNAIQGRNIKVTFLGGNQF YTRGGDANHPMGAVNPGVDVQPGYYVAAVSFQGKAGDTVKITLPYVKGFTPSKLGAQADL PASVTAQNEATITGSDGRKYLVETYSLSNNIESLVTVYFEYQNNGYWIVQGDNAPEVYNV SSSDLGDKTFQIKAVIGGGENPEQDKDKQEGSADFTTHLSEEISFARVSDDSSLVAGQGE DPYASGTSKAVAGKDFSAFLHIWDNSSLPPNNGHGVYWGIYGGTNLGTTITIPTPEGYQL NIDETMKANGWDSAGYHITQEAPGKDIVIKIDKGYGIMYQDKPQPSYRLIGKFTQATPAS DTSLWASGPVKIEKINNYDSTGKPIVISYTGDSTFNKTLLGQSSIDSAKQASKTIDPTTG MPTDESAISTNYGSVNSYKAPKRNNEKLFLDAEPDDSEGSFRFDNGTAQNFTTKDGDVTL NFTFDKKLNVYKLSTPSAAYMEGTSLINEYHYTLTRADGSTQTGKIDAGGTIENANPASA VVSIVLTPDQVFSATIVRHYFDKYNEFTFYGHVVNKNAATGETKSNIGDQLTATFQFKST NAQGVVINSPIATLTQTVDETSASLKFEALPDTSVQAGDKSGWNIRGLYDNSSKTASGYS SYEPIIYYVLPKGITYRNTPGLGAGNFTAGGNTAIPKVSTFINSEGEQVIKVDYSGTKSY YTWPKDEDGINDQYDIGAVPGLDMIAGDYKGAVYIKSTTPMDTTLNPKATSDDAQKLLDL AGDATNLYHVSDLTFKVNSGDIVNTVTSAKVDNGAWKDIVKTDVNPNHFKDHTVSFGWTL NNQASDEVKGIVSVAEIPQINKHGNELDFQLSGPITLPSNLKGAKAYYYTGDFNMDNTEV SGKPDLSTWQTADQITDWSKVKYVAVSIDSLPAKSSSGRIEISGHITKARYSNAGTGFLP TITYTKKPDNSDNGPLSILTMTGADGRRRAAEVDATVVDSLDVKAVFPTDSGISDIDLGR GPVYTPNEGQIYSQSDYPDSMAEGKIPAGWKLDKKVLVDNNGQEYAWGRSVFYLISGEPN FTDLHVEFRYIHNQRTITPGDFPDKDKSAPIDGVTYRDVVKTVTRTIRVHKTDGTVETTT QPIDFYRTITYDEVDKKIISTSAYKPDDSLWAAYSVPSVPDKVTVYTKTINSKTTDPTIL ADGNVPEETIDATTNDEFVDVYYQDPGTKKPDVQKTVTRTVTVNFPTGYNVDATALKAHD GNGVTTTVNGQTVTRTYTTTMTRTVSLKSDGTWQTTDWQYTNQNWPGVTSGDDLLPAITK YTPTVTDNTKQQTIASINAEVVNENTQNESFTINYNENGVIQIVAVDKSDNNKPISLGDL STTMEGQDGTTIDQTTLSGYINSIKQKLAGQNYKFDSQTPTANPTTYADQTVTLYFTHNT QSFTPENKPTDAEDLEKTISRTVTVNFPDEAHAQAFAGKAGYTVNGKSVTRTDTATFTRT ATKDLVTNTYSYTPWVVKGTSQASATLPGLNYGEAFLPEIARYAPDRSSVNAVTIDDAYI KAGTTPESVTINYAPSSTTFQVVLEDQDDGNKVVKSFTFNNKVGETHTYTDAEKALPSNY EWADENNKLGDSITLSDTTPALTVYYVKHMHKTTTGTKDINRTIDGTKPDGSTINYSDKV TFNYTTDTDLVNGKTTTKYDHDSQSFNAVPDTVAPASIDGYSRVLNGGTLDSQAVTPNSS DINVHVSYIANDQKILIKAYDVHDNGKTELAIPRGIMTSIIGKSKAVVDTTEVQSAINAI KQYLESNGYTMITKNPVIPTNFDADSKVDQIVELDFDHKTDVIDHGHIPDGSPIKASDLE TTVKRTVTVHNTDGSTQTVNQDFTATRTANYDPVTKKVISYNPWSGSSSTFTISPQKGYK SRWTTRFGEGTPISAKSGDTDYQLVPAYDVDAQHITADTVPGQNVDVYYDAQDATRTIKY QDKDTGKIVGSFDSDPGKVGTQVTVDIKGNVPDGYELTPGIEIPTQVDVTTDDVPVVVSV QRKGTTYSYTDKNLPTGVTADDLQKTVKRQIIEHLTTAGQDQDKYINQTANFVRTVTVYP ATKDLPQKVVFGEWTPKTDADAVFSEKAIDQVDGYISVEVGSDTVTGHPITVVPSQVVQK SNGEPIDADTFHVYYRKVSTVPEGNIPEGTTKKDGTKLTDADLGTDIIRDIYETAPGTSE PKLVKVQKVRLTRDALVNQYTHEVLGYSDWRINSEYNKNHAADGYADTLPDYTPTAYTGY TPSVAEVTPIIQIDNNTPHLIHVYISYNNQKRTQVINYVDSATGKTVRTQTITGVSNQDS SENLEVPAGYEQDTTKKAENVTFSEDGQSIIAHFQDKDLPTGTIYVKAGQDTYTKDNVPE NLRDQVVKEVTRTITVNRPGEKTPQVIKQTVIFHRTIKFDKVTGQVIPETATAWVTDDNS ANGTWAEYDAPTIAGYVPTTATVASQSVTADTADANITINYTDNTQNIKLKAVDDTNNAS EITIPSGYTTEISGTSSTPVDQDKLQGAIDKIVKALEDEGYKFAGNNTIDTYDNDKTTDQ WITIHFTHQTEEDSKGQLPEGVTPEDLEKTITRTVHVKGEPTKGDHDETQTVTATRKAIY DKVAKKIIGYTDWTGAIPVFNIDQYTGYTSKVDGNAAKEVSSVTIDNNTPATLENTVTYE AGDATQIINYVTEDGTKVGTTSISGHVGDALGSGVVDKINGNVPSGYELVSGQNFTNYES NKFSTVDNPISVYVKGENGARAQIIFKDIETSREIGSARDVTGPSGETKEFDLTAPNGYD FVDPTDAKKNITFSTDGKTVIIPVYVKHHTDTIGPNDNPDDATKKLITQSLTGNATRTIT VHKIDGSTTTETQTVQMHRSAIIDRATDTVTYTAWEADDPANAAFKEYTPAKQAGYTTLV DGAPKDTVASETPTKPGDETVNVTYKASQKSAEIRYVDSKTKQVVKTDAVTGAPGEKVTN FTTSVPDGYVLDDGQKVPSEVDIAAGDQATDPITVYVHQKIDTLTTDQAKTHGVLDSDLA RTVARTVIINEPGKASQTYTQVAHFTRQAQLNEATGAITYTAWTSSDSHFDAISVPEVAG YKSTVAATDPSVGAIDVTAEDRDKFVVVNYTAGDQDLTIRLHDVTDSSKSVDIAVPSDVT SVFHGKSGAAIDSTDLRSAISKIKDELAKQGYQYVGEDMPVDYDTDDKVMQYLDMNFKRV SQTVGPHDTIPEGTKKDDGTDLSEKDLTQTVTRTIYTTDPEDNQTRFTQTVVVTRTATID MNTKKVTGFSAWSSASFDQYTAPSYKNYTTNIDVDGSGNNVVGRAVTADEIASGQAKDVH ITYTKNTQEATPTNIPDGAKKSDGSKLTKDDLEKSVTRTIHFVDENGNKVADDSVEKVTF TRTATLDKDGKVISYSDWTQSGSWDDVTSPEKAGFKATIATIPAVALTPETAKDVEITVT YKPERVIGHIKFVDDKTGALVSDKIVDAKAGQTGVATNAAVPEGYEIAADSEVKTVPASL DFGATDHDDVIIKVSQKVDDVDPDHIPDGVKKSDGTPLTKDDLEKTITRHIHFVYPTSYK GAKDDDFDQTVTIKRTAQYNEATKTVIFGDWQPATLEAYTPADREGLVTPSAVPSLTVDE NSQDSSVTLTYTTKTASMNFKAYDDTEGKDITLPSTLQTSISHAGDQTVTQTEIDGVVEG IKSAVGDNYKFEKTETDENGNVVVHFTHKTSPVTPTDSDQATTKEITRIIHVTTPDGKTY NYKQTVTATRTLTRDLVTGKVTEGDWTTPSFDQYGAPQYDGYTSQVDSTNSTEVTAHQVT ADEITAGKASDVNVTYQANDQSFKVHFIDAKTGQEVLSPVTYSGKTGENVTIDQSKWNLA NYKLVPGQNIPASVKLSAEPSDLYVTVDHNTTQYDTKNPGKFNLSKTITRTIKVVDPVTG ATSVVDAESVTFTRTATVDNVDGSVIYSDWTPTGDTTWADFIAPAKTGYTASPETINGKT VSAYDNDETDIITYTANNHDVIVKYVDSTGKEVGNKTISGKTGATIPVDAQSGLPDGYEI DPNKPAPATYTVGDGDGQTIEVHVITGTHTYHEGDSNVPSNIQLAKTVTRTINTISPDGT ISTQKQSITFTRTATVNAASGKVTYSDWIASVSSASGKDVTVGPDGVKFSAVTPVEKTGY KTNIDGNLAEETITADSNDSVVNVTYTPEDQSVVVKAVDDDNHGSDITDLIKPAIAALSG KTDAAIDPAQITSAITAAKTALADKYDYVSFDPVTKFGESGQGQLVIHFKHKTETLDKDH TGAGTEDDFVKEVTRTIHLTDTTNATHDYVQHATVSRTATKDLVTGAVTYSDWSVAKFDE FDIPQVDGYKSYAGSTKGDQTTAATQVASADVTVSNNIPQNGTDVYVSYKGNENTNQSIE YVDIATGKTVKTDTVSGIVGQNTTYAGTLPKGYELANNSSIPTSVTITANNTPVKIYVRQ ITYTDANKPSDLTDALSETITRTIHFEGITHDDVVQSVSFTRTATYNQDTGKYDLSAWTP VDGNKWAFYNAPQVAGYTGTADHLEQVTVDPDTTKNDEETIKYTANAQTARVIMKDSDNN DSVISIDTVNGTTGQNVAISPVIPKGYELDTARTANLPTSVQFTTDGTPTADTVIYLKHK LSSTPSDWPLSDDAYKEATSMTITRTITISKPGQADQVIKQPVTLTRTITFDAVTGAIKS TGAWSTGSWNLVGYVQAPDPIVYNGITYNRVVTSNSSNPAEQGNNALQKETVTSASKSYD VHVTYVANATTLNFKAVDDDNKGVAIPIDGITTSITHQSGQALDSTQVQTIEQAIINKVQ GLGYTFVPGVDESNPSEYVLHFKHTTLTLKDNDSTPKGITVDPLNKIIYRTISYKFGDNN SAGLDYSTNESYILKRTATIDLVTKAVEYTDWVMVNSDGTTSTSLAMPYEAIPTAPTGYT FDRIDGHDGTDGQPAWTAIPSMNIDSTLINSTNPTKINLVIRYKVASQTVPVYIYDVDSK TPNTAIGKTETVTVDGKPVVQPKAKETVTTGIRFNYNYGRAWLDANLNNGDNYEFVTGES YTGYFTMSSDGIPKAINVYVRHKHTTNTETTTSTRTIYVQGQDTPQTQVVHFTRDVYKDL VTGEVTGYGNWTIATDKDNSPEQWDAVDEGKAKPGYTTYIDGVKGDTIASQTPLPNQNVA VHVTFEANPASVNVVYRNDATNVVVQTVPFTGTIDQTIPLTYTIPAGYKLAPDQNLQKSY TLKAQNGDITVYVETDPKTYTPETVPSDVPESIKDQMTKTVTRHIEIVYPEGYTGDKLAT PIDQSVTFERSVTVDLTKSGADRYVLGNDWHVKGSDNTQGSWASVELTKINGYHTDQGID AATVDANSSNVNLTIHYLADDAQLGIKAVDDTDNSDITSKIGSAIANITGKTNEAVDADK VNAAVKSAKDQLAKLGYTYVGTDVVTKFDDVVDTTAKPSQYLVIHFAHATSTYNRGDKDL PDGVDSSQLTKSVTRKIIVHTPDGNTSTITQTTTFGRTVTVDNVTGTVTYGKWTPTDGEF DQYDIPQLEGYTSSVQYSGDAQAAAATSVNKASAVDGQGNPVDGSQVDVYYNANSGKQEI KYQDEGGNDKGSQTLTGKTGEVVKVDQTKIPAGYEVVPGTNNPTTITIPGKPSDPIIIKI QPKVDVITLDNNNKPKGVTDSDLTKTVTRTINVHKPDGTTSTTTQQVVFTRTANYNEATK SVDSYSAWVPVSGNKFSEFNAPTIAGYTPDKNAPEVDVSPDTANSTVEINYNANKNLTAH IIYVDDNNNETPVKVDSVTGLGAGDHHDYTAVAPSGYDLASGQASTVTITVPTDGTAPSD TIIHLTQHSDPIKGGSDETSDKTYDLKRTVTRHVYVKTPDGQTKFVKDQVATFTRDVTVN RATGALTYTPWTSDDKNFEAVSSDDIDGYTQNPVSAITVDENYGEQTAYITYSPKASQIT YKAVDDDASGKDITPSGINTTVDNAKGIDQATIDKNKASVEAAIKGAVGNKYKFKEATTD GNELHFTSSTPRLLTAQILISQA >gi|313656766|gb|GL545251.1| GENE 238 245357 - 250567 6377 1736 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0942 NR:ns ## KEGG: LGAS_0942 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 6 1662 1047 2525 2833 286 26.0 8e-75 MLEADVTRPITIVSPDGTKQTIVQTVHLTRTATVDEETGDVIYGNWTTGQFKAYPVSDVD GYTTEVKYGDSAEAKRVDGDVKASDITITGQDADAKPENGEPVIVTYKLNDASGKISYQT SDGTEVGSQTISGKAGQTSTYKTTVPTGYELTDPNQTAVTVTYPTDGSQKTVVVTVQAKN DTYDNTGDKPDWVKEATTKDVTRTIHFAYPDSYTGTKHDDVVQTVHFTRTATKNEATGDV TYGDWTAQGSDQFDAFNAPDIHGYHPTSSALVVTGVKADGSYDDVTITYAPDDLVGRVIY KYTDKNGNVSVVGAQTVNGTTDESRQLTDGDLNVPKGYKLVDGEALPTINFKPGQTNEVT VNVDHVIEHFNSGDDIDSHKGDMPKGVDITAIKQGMTKTVTRTVYVTPVNGERHQVDQQT AHFKRGVTIDFATGAVIYDPSWTSDDATFKDASSEVAPAPTGYSIVSTHTYGQETVTAND NDIDVEVTYAAAKSHITIVAKDKSNNNETITIPSSISTTLDGQTAATVDPKNVQTYVDAI SKALESEGYQFDSTDTFPTAFNGDTTLNIYFTHRIDDKTTNLPSGSEDVTKDVTRRIHVI APDGQDYYIDQTVTATRQAKVDAVTHKVTGYTDWTIPELTSVTAPQYAGYTPSIASVESH TPTADEINAGHTDEVTITYTGLATTQSYEYIDADTGSQVGQTYQGANGKVGDKVNFDTEI TTNIPNGYELLPGQTLPGEHELGQTNQTIKVYVRKTVVDDKNKTTTTPKGSDKSTLKDLS KTITRTVIAHVPGKDAQPIASQEVHFTRTATWNDATKSWDYSDWKVDGSQVWDAINDKDI PEVAGYTHTPVHVDSYNVLPSTQNQTVDITYTALDHTTHVIYKYGDLTINTKELTGKTGD TVQTNINDGIPENYELVPDQNLPENITFAADGHADIVVNLEHAQDHYDGKTGEKPAWATE DTTRTVTRTIHLVYPEGKKPEGAEDTHTDSATFTRTATRDKVTGQVTYSAWTLASGDANF KKFTAPEVANYTPSTSEIAAETVTADSPDTNYTITYNANGTNFTIKASDVTGDTPVDIPI PTGINPVITHKSDGSDNDEFSAKKAGVIAEIKQALAEKGYDFVGEDGNDTGLTLKFKHHE NTYHQGDDIPEGDKDLIKEDLTKNVTRKVITTKPDGTKSEITQTVTATRTVTIDEATKTV TYGDWSLPSFEGSGVEQIKGYTSQVDGVNATTVASHQVTTDEITKGTASDVNVTYVANDH TMHIIYRDVDDGYKLVGDPITVTGKTNTTVDTNANVPAGYELVDGQTNPATVSFPADGSE VQDITVLVKHHVEGVDPNKPTNIPAGGDKDAIIKAGNKDVVRTIHYQKADGTKAFDDTTQ TVHFTRIVKVDAVTGKIVGYGDWTKANPQPAGDSDHWSSVTVQTLAGYTPSQDSVQDQSV DADTNDKEITVVYTANTHMAHIIYQDADNNNKSIYSQNVYGQTDKTYTISQDTTNQDPSV IVTSVPTGYKLADGQSIPGSISFNADGAKDIVISLKHELVDAKTPTDVDTHKGDIPSGTD LDAIKQGMAKDVTRSIYETKPGESRKLLTKQTVHFTRTASIDRVTGKVTYGAWTPESGSW DAYPVQGVEGYEQVVTGGTLSETPVTGDMSDQDVEVTYTSQAAQDITVVARDVTDKTNPV DLGQTQSLHGNVDSPVSGKDLSDAIERLERHLLLRVTTTKVLTVKSQLSLTIPNTL >gi|313656766|gb|GL545251.1| GENE 239 250684 - 251502 892 272 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0410 NR:ns ## KEGG: LGAS_0410 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 14 263 1582 1831 2457 101 35.0 3e-20 MHYNVNGHEVVEHVTQPVTLTRTATVDLAKFAADPTDKTAVTYGAWTTADYPEYSIPDKA GYTPYVNDNETHSLAATPATDDVNVDVYYKGHEGTQIFKYIDAASGNQVGVDVKFTGNVG DSEQTYTYAVPAGYKLAKGQGTSSTYSFTDGINTTNIYLDHDVQEVTPTTIPEGSTDVTK ADLTKTVTRTISYKYEDGTVAHDADVQTITLTRTAYVDPITHQVTYSNWTSDKSFTDVTA PIIDGYTPSKTEVLGHSVDGDSDNEKHHSYLH >gi|313656766|gb|GL545251.1| GENE 240 251474 - 261274 12055 3266 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0942 NR:ns ## KEGG: LGAS_0942 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 442 2326 1004 2697 2833 334 24.0 5e-89 MKNITVTYTKKTQSTEIQYVDGDHKVIKTVTVTGKTGDPAQTVNVDDDNNKPSGWKLSGD APKTITITFDNNHKPVEQITVEHDTRTYKSGDVNAPEGLDKTVTRTINFHKPAGNEQVVQ TVHYTRTATVDLVSGDIKYNAWTIADVSGATKGEGTDASFDAISVPTVDGYTADHTQVEA QKVTPDTADSVVDVYYNANKTEIHFKAVDEKTGKDIDLLGSLTSPINVDVTTKDADSQVA SREADIKQYLADKYTFDKVETSQDGNITTYTLKFNHATDTISKGGNLPEGVSESDFTKTV TRTINVHTPGQTDPEVITQTATAHRQLVVDKADGSYTWTPWVVDSQFGTYNVPQVAGYTS QVDGQDATSVDAVAVVQADDNDKTPQNGKTVEVTYTAQAASQKVIYIDAASGEEVSSFTA KGEGYVTDASVDFDDQIRTNKPENYDFVDESEFPGSHKLTAGENTPVRILVKTHKDTYHD GDKNIPTGVAALSREITRTINVYGKDGKTLNHIEVQTVKFTRTATVDAKSGAITYSDWTV SGDSYWNSFDASSYVDSGYTAQRDTHIASASVTSASHDVVIDIYEKANDHAATVTYIDQT DAKNPVTVMSYTVHGQTDQDVTVPNQVPHGYKLVDEDALPAIIHFTADGAKDVTVYLVHD TADDLNSPKIDDKTKKEIEANLTKTVTRTITVHEPGKDAKNLPAQTVSFHRTFSYDVLTG QVTYGDWTPDGSTTWVAITDKSLIPDVAGYTHNTVDEVRNITADTPDAHVDVVYTPEDAQ PVTFKAVNDTKSGEEIAIPADVIKSITGKTDAVVPADKVSDVISGITTALTKQGYTYVSV EGIPTKYSASGSTVTLHFKQVPGTYSTGNIPDEFRQYVSDKDLNRDVTRTIIEHLPSGDK TLVQRVHLTRTVTVDTVAFRSATNDDAKTKAISFGAWTPADSSFDEYDFDQVAGYESQVD GKAQTKADTLAALSDGQPITDVTVNVDYVAQDASQPIVYVDVVTGKTVGNTSVGGKTGES VDINTPITQNIPTGYKLVDNQSFSTTTLGATNKPIKVLVTADTKPATEEQIKADHGVVEK TIKRTIHYVVEGSGVAAPEDVTQEVHFTRSATYNPTTGKVTYGEWTPKDGESNTWASVTT PTIAGYIPTVSGFDAVTVTDRDVDEDLTVTYKPEVRNYKVNYVDQNGNVIKTDTVTGKTG DTVQINSSTPFGWNLDDGQTIPTTATLDADDTKNVATVHVHQVTKTIKGSDDTHNDALNK TVTRTVIITDTRGEQTKQVQSVHFTRNQEINLATGETHYTDWTADGDDKFDAVTAPTVDG YTIVGQAPEVDGVKATDPDTTVNISYVANKQTDTFKAVDDDQNGEPISLPGSFTTTLKGD SDTPITQDQVDSVIKDINDYLTEKGYVSKAAPTITTDEQGNKTITLHFGHGTEDTSATDP AAKKTVTRTIQFIGAGKQSPVVQTITATRTATKDTVTGETKYGDWTGSFDKYNAPVLDGY TMTIDGQDSTDGVVPSVNVDKKAPQNVTVTVVYTGKQGQQTVHYIDADTGKEVQVDNPQV IRATVGSTQEVNFTAPKGYDLIPGQKTSEEITIPATDTGIDVFVKQHVDNYDSKNNPDNL ELTKDVTRTIIVNKPNEAPQSIKQTVHFTRTASVNAATGATTYSAWTVDGTDSWDAYTAD DVNGYTTYVDGKEGKDVASQTVTAYTGNQTVNITYTANAKSVQIVYVDKTGKQLGSQTIN GHTGSTENVTPVLPSGYQVPKDGKQVPTTITFPGDGSDLTNITITVEPTQHTYNPGDKDL DKEVSAEVRDKMFKTVTRTVNIYVPNEKGQEVKTTIVQEVHFARPVTVYGDGTVQYAKTW TPQGETKFDAINVDNFRGYDASVDGTTPSEQVPEVDNIPAETPDSTIDVHYLPQDQKVRF KVVDITDNKEITDLNITNDLESPVITGKSGTEIPTDKVKAYVDQIKKLMEARGYEFDSAI YPSDFDKDKSVDQQVILNFRHAKKNFEGTDTIPDNVKKGDNTALTKSDLTRDVTRKIILH TPNGDVEFTQHVTAPRTATVDEVTHVATLGDWTTPDFASQDVPSYRGYTAKIGDTTVTSV SSAPVAYVNDEPQNASDVVVDYVGQTGATQIDFVDKDGKIVGSSKSFEGQVGHDVTISGV TVPDGWKLAEGSTIPSSATVYADGRHVKVLVVHDTENVPSTKIPDGTTRSDGSKLTETDL KHDIVRKITLNKPAGTEVVIQHVVWSREAIVDKVTHQVVGYTDWTLNTQTPTESQDGKTT TQYGPTWKPIHTDAIKVAGYTPTTDQVTEVTPGPNANNDEITINYVAQPATVKVIYHDDK DNKDVAFDTIIGKKDGSKSTYDYQVPNGYQLAGDKTSAEFSFDGEDHYLVDGGQAIDAKT PFIIHLTHKTETFDKTSHAGFDDSDFERTVERHVRIHIPEHLEDPSVLGSFLQPGQTFEV VQSVTYERTATKDDATGKIIFSDWTIADTSGNVTENDDGSVDFKAVEAGQLAGYTPMTSA QEVAKVTADSRVSDLDIYYVENGTTITISARDNDTKSYLTIPDELQTTLTFPDVTGKDQG QKSLQSDVTAITAYFEKKGYDYVDVTQDGNHYTINFKHHIDHFTGDTCPDIPSDLDSAIK QPLTADVHREIEVHLPGQTDPVIITQTVHAHRTVSVDRAKLAKGDADAVKYDDWVFDDGD KFKAMPEAIQGYKTLINGVEAKDKNGTVPEASAKDKGGNPADGQKVVVTYQADVANAQIH YIDTDDGNKEIGTAQEVSGHSDEQKTVDTKLPDGYEYVDPSQKQVTIKFSDDGSVVSVNV LLKHKKVTTDKVPEGIKKQDGTDLTDADLTKTVTRTFDVLAPEGSKVDVPDKQTVTYKRS VTYDPVTKTVQSFGDWTAEGTDTWSQVDVPQVKGYTSVVDGTPSQVVAKVDKPQSDVTVK ITYKAGQQQIRVIAVDDKTGAPIIIPVDGQALQTIIYGQTKAIVDKAQAQSYIEAIIYRL TKLGWIYDGHTEVPTLFDDDSSKDQNIVIGFHAEIDDYKPNDKLPDGAKDPNNKADQIVR EMTKTRTIIFKDEKENVTKKVEQKVDFVRDVFINKVTNQVDHYGDWQYKDSNVKTWDAYD INKPGYTATVIDTTDIKNPKPLAKSEIDKQVVDDKSSDIELTVTYTKNPVKEDSGNNHGG NTSSGENGHKSGNTPEISNGKGVKTTLRGIKTPKRATLRSSNLVGKNARKLPQTGSDKEA SAALGLAALGMSSALAYASKRKKRRN >gi|313656766|gb|GL545251.1| GENE 241 261622 - 264012 2411 796 aa, chain + ## HITS:1 COG:no KEGG:LJ0382 NR:ns ## KEGG: LJ0382 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 55 791 170 943 3619 110 24.0 2e-22 MRVSKNNIKNKLSQSATRTQHFSIRKLSIGAASVLLSTSLYFGLSGHASVFADTSTAQST SETSSSSSATQNGSSGSSSSSTTQSESLESSSSDASLTSKSSSSTTDETSTDSVQSSNNV DTNSISSVSNTNSVNAISSDSNSINLAENGKITLSKTTIGNDGTTGSNRSIIGHLNLATV HIGDVYKITIPKSSTYSSTGVTAPASSTNFSVETSTDENNWYITVKALNDSSHADIRFVI NAESSNYTDTGLVKDKDGLLTDVGTKTYNIVVTGTDVNGNDLGSVSSPNYQAIVKPQFND ITYTSNSGIKDNVAVANRELSYTINVHEAVGLADNTSYLTGKVAKRVNHGSIITIPMPKG FVLNVADTQAANESGVTFSQDSDGNVIINASKATGDLAYNSSAGYVIKGSYNIDTPENDT TLTANGPITVKQIIDDNGTTITGTGTSVITQVIVGKNSDYDGKITFSWSKEVELYPYGYS YSTKKILDGKYNNAVLAQYTATNNSLTRDVTNPTITVNVPDGLAVTSFNISDKSTTSVGT KTYTIYYEDGTSETGTATDDSQVGNGKTIKQIIVKAETLPSLSSISITTWGNTAETYRDG TKTGAGFTLKDSASFTGNGVNETDGSVIYNIDPLSELKAKASFGGLSRGNDNRSDFYQVY FANGSGKIANIKDPVFYYVLPTGVYFNGTITNLQGNPTITTDTVNGHQIVKVDYTGTNTS YKLDTGNGIGNMNLGVNGDASNGTYTVEGFIKSPETVLDNDSASKASDVSADYFGGSVDN VYYIGQATFPVYLQLL >gi|313656766|gb|GL545251.1| GENE 242 264081 - 270911 7285 2276 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0143 NR:ns ## KEGG: LGAS_0143 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 945 2237 1537 2732 2823 282 28.0 2e-73 MQIGFNIINNESTIADGDVMYLNIPSNGLFKVTGPVVAPSGLTGYTIYYSKSATDLNNAK VTDLDNSSVWTSDTSNWTAEDWAQVKSVAVSLPNIAGNTNTGRFIINGEDPTIAQDAGKT LAVASAIANPNSKTIVVSESSNSAPKLTISGTSTIKTALKYTDADGQTHTINLNYTKQYQ DNSSTMNYSDFPSTINGFNSEDQAIINALIAKGYKFVPLSDTNNTILNNGGQTWKTDINT APDGSATWGGQVKYYFDGDTVVYTLAHQEIPVTPNGGKNSSDKIPNESGKNYPNGVTNKD LTKTVTRTINIHNIDGTTTTITQDVKFKKTAYVDAVTGKITGYSDYTSFDDNNGQYAERT FTTPAGYSSNVTYKNTNTTDTTSGKVTTESATDKDGNPVDETVDVKFIAQDQNITIKYVD DDNNGSQVGDNQTVKGKTDETVKPEYTIPDGYDYVSGKVDSHTMIAGDNTVITVHLKHHH DLTTKTINKEITYQTTLGKQVADSYKTSTTITKDYDEATKTTTYKVNGEKATTADLGSQD VPAAPTGYHLDTDQSIGDYNKTTSYDLVSQFDTLTDGQTVNAKVIYAPDTENVKVRYETA DGKTLAAPETKSGDYGSSYETNAKTITGYHLTKTPTNATGKFGTTNDDVVYTYAPDTENV KVRYETADGKTLADSETKSGDYGSSYETSAKTITGYHLIKMPSNATGTFSTTNDDVVYTY APDKQQINIVVIDSSTGEKVNVPIPNDIATTSFTGNSNETIPTDVKTNVEKIKDYLKSKG YTVPDTITIPSTFDDTSNGTSETDASPQIVTIEVGHHHTTTDKTITKTITYKTDKGDSVA DNFTKTVTIHKDTDDVTGTSTYTANGTTLENGQTILGSQSLPSKTGYYAAIVSEGATSNS TVSFDSSDITENVVYKQLGKIIPVDEKGNPIKGADTPTYNNSNNPTKPGDTTTPTVPGYT TTKTTVNGNDITDPSKDTPVTYTANKKTTNIVFKDQDNNNEVVKTVPVNGHTSETVTVDG TKTTIPNGYELVDKDGNVIPTTITFTGGDSTTPDTVVYVKHKHDITTKTINKEITYQTTD GKQVAAPYKTFTTITQDYDEATNTTTYKVNGKTVTTADLASQKVPAAPTGYHLDTTQSTG DYNKTTSYDLASQFSTLIDGQTVNAKVVYTPDKQTITVTVHDSETNTDVTIPTTIPTSFD GTTGGTVDITDGINKIKTYLTEHGYTVPDKIDIPTNFDNTDNGDSTTDKTPQLVTITVGH KTTTVTPDKPKTTNDNLPDNPDKKYPSGVSETELNKTITRTIVEVDPVTKESKTVATQTV HYTRTATVDEVTGKVTYTDWTTTDKWASYTATTKPGYTPSQKSVDESTPAVDDKDQTVTI TYTANPTNTNVVFVDDNENGKTVKSVPVNGVTGGTTPLSNDNQKIPDGYELVDGNKVPTE IKFNNDGSQTPDTTIHLKHKTTTVTPDTDTTKTLPDNPKKNYPTTEALTKTVTRTINVHN TDGTVTTKTQQVKFTRTATVDEVTGEVTNYGDWTVDTSDHKPSEFEAYNYTTPSGYTSKV AYNTTEDKAQAGNGTVAKADASTTTDGKTTPVEGGTVDVYFVPEKQTITVTVTDQDRKPV VIPTDIPTIFNGTTNSKVGTDVTDGVTNINTYLKNHGYEVTNQSETPKNFDDTDNTGKDS DQTPQNISITVKHKTVDVTPDKPKTTTDNLPDNPDKKYPSGVTETDLNKTITRTIVEVDP VTKESKTVATQPVHYTRTATVDEVTGKVTYTDWTTTDKWASYTATTKPGYTPSQKSVDES TPSVDDKDQTVTITYTANPTNTNVVFVDDNENGKTVKSVSVNGVTGGTTPLSNDDQKIPD GYELVDGNKVPTEIAFNNSSQTPDTTIHLKHKIVTVTPDKPTKTGDKLPDNPNQTYPDGI DTTKTVTRTINVHKPDGTTKTTTQTVTFTRTVTVDEVTGKVVKTTDWTSTNPDYPEYTVP TIDGYTPSQTTVEKVTPKATDKNSTVDVTYTGNIQTIKVVVIDKTTGKEVTIDVPTTFKG TSDNKTDKNITDGVEKIKDFLKKKGYSVPDKIDIPTSFDHSQNQDSKTDDHPQVIKITVD HTYSSSTQSKTITRTIKVVTPDGKITETKQTVTYTRTVTTDNVTGESTKSNWATTDKWSS FTTPTVDGYTPSQAKVDSKTPTADDKDETITITYIKDADKKKNNNNSSKLTHNTTPINEK SYSKSSSNRYQAAKLRNTNRLPQTGNNNEVETAAGLAAVTVSSLMALLATKKKKRH >gi|313656766|gb|GL545251.1| GENE 243 271396 - 271683 200 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855734|ref|ZP_04646029.1| ## NR: gi|238855734|ref|ZP_04646029.1| ysirk type signal peptide domain protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] SdrE protein [Lactobacillus jensenii 1153] ysirk type signal peptide domain protein [Lactobacillus jensenii 269-3] SdrE protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 95 1 95 95 135 100.0 1e-30 MGVSKNNFKHKMEESANRVQHFGFRKFSVGLTSVLLSTSLYFGASASISKAATVSTDQTK VTDVNKQVTSEQETKNDGDSVTNSEQETVIQLVLK >gi|313656766|gb|GL545251.1| GENE 244 271950 - 275555 3507 1201 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0143 NR:ns ## KEGG: LGAS_0143 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 387 1190 1697 2489 2823 243 29.0 6e-62 MNLGDTINGQALDPTKFNYVVQIFDNGLNGEVASSPDKARLLKTAVYSVDADSVTTIPGI SSGIDFVHYSGMGVINTSYTLGIKDVNGTYRVYDINLQHRTIKIPTNLENDILSGTAIRI TKGEYDPNGTTIPGLDGAAEERTSSPFYTSYLTNSYLRRVFVTKDGKNILNRQLSTEVDF NVNWVLDLVTGQYSVATTNPVIDSSGDILSTVGSDEKEIPQIPGYKSYLVVDGVYTPATS IPADSVNIATQTLSMPEGLASLSKVVNIAYIADGQKLKFKAVDDDASGADITGKIGSTIA TQMTGNSSAAVDLKQEQSDIDAIRRVLEAQNYEYVSNDDLIKNFDDDMSTDQELVIHFKH KQGNVVETKPVSRLINLHQPDGTTIKQEYQTGTATRTNTEDLVTGKVLTEGKWSGGLTQY QIPQLEGYISQVDNSGTRVDQSSIDGTSFKDSATVPTYDAIDVYYRNVPAYTVVNYKDAD GNIIKSENIGGKVGDKVTVTADKIPDGYELVPGQDTSKEVTLTNDQPGQPKTPIVFNIQA KIVKVKHDAPKNAGDIIEKNFTYPQGVSEEDLNRSVTRTINVINPDGKTSTTSETVKFYR DATVNEVTGKVVYTDWQIASDSPQKSWSAFTTPNIKGYVPTITSLDAETPTAATGDKEYT ITYTNQTYTTHVVFKDADGTVLRTQTITGVTGSTSNVDQTLPAGYKLKEGESIPSSITFN GDPVADKDITLEHDVVTLTDKTPDLPQGLTANDFKQDVSRTINVYDTTGQTITKTVNQTA TFTRTATYDKATNKITFSNWQLADGSNKNFTAYTAPEIPGYTATTSVPAVTVDQTYGKQV VNIYYTPNDGKVIFKAYDQATGKDVAIDLDSLATNTELAGKVDSAVSATDASDREAKIKN LLDKLGYQYVENSATATPEKYTADTQTISLYFTHKTSETPEDKTVTRKINIPGENGKTIE VVQTATVHRTNTTDLVTGKTTPGDWSKASFPDYDAGQVDGHTTYVDGKETSTVPTAEVKI ANGVPQNGDDVNVTYEANPGQQTIKYVDENGNPVKFSSDSDDQVITGKVGDIKTVNTTIP AGYELVPGETIPGAVDIKQSDSPIIVTLKAKTVTVTPDKPQNEGSEIPDNPGKTFPKGVS ESDLNRTVTRKIIEDKPNGSVTVSDESVKFTRTATVNVATGKVTTTTGQLLVLQTSSLNM F >gi|313656766|gb|GL545251.1| GENE 245 275732 - 280249 5490 1505 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0143 NR:ns ## KEGG: LGAS_0143 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 15 1107 1613 2700 2823 286 29.0 5e-75 MTGKTGETKTVTPEIPEGYELAKDSSVPGSVDFSKPASDQKVKLVHKTTTLTDETPDLPN GLTSRDLKHTVTRTINVYDTAGQNITHTEKQTATFKRTATYDEVTKKITLSDWTLTAGDS NFAEYNAPAIDGYTATNKVDAITVNRDSGDSTVNIYYTPNDSKVIFEAYDQATGKDVKID LDSIATNTELAGKVDAAVSATDASDRESKIKTLLAKLGYEYVENSTTATPDKYTTDVQTI KLYFTHQTSETPEDKTVTRIITVPRGDGSTAKVTQTVTVHRTNTIDKVTGTTTPGEWSKA EFPGYDAGSIPGHTTKVDGKPATSVPTEDVQVVDGVPQNGKDVTVTYDANPGTQTIKYVD ENGNPVGNDQVLNGNVGDKEKVNQKIEDGYELVPGETVPETVEIKDSDTPIIITLRSKKV TVTPDQPKNPGDSIPGTEGKTFPKGVSESDLNRTVTRKIIEDKPDGSVTVSDESVKFTRT AKVNIATGEVTYSDWTVVSPNKQFSEYTLGDSDQVTGYTASRTKVDSSTPSVEAGDQEIH ITYTKTNQTTTINYIDTQNGDAIIHQTVITGRYGDKKEVPSEIPEGYELAKDSSVPGSID FSKPVSNQTVKLVHKTTTYTGDEPKLPDGVVKTDLQKTVTRVVTVYEPDGKTVQSTKTDQ ATFKRTLTVDQVTGEFTWSPWTTSDKTTFDAVQGTEKTGYVAQSTPSVTVNENSSDMDIK LYYLPLTQKVTVEAYDNQTGKEVPLTIPAGFDKEITGNTNHEVPAQKLNDYIAALKGFFG DKGYKFVSQSTDPTNFCTKDQVIKLIFNHPGIDVSDTDPKAKKLVNRTITIKYPGGKTQE ITQTAVATRTATMDPISKVVTYGDWTGGFKEFTAPVLPNYVSQVDGKDAESVPAIVFDKD HEPSDAKATIDYHTKPNTQTIKYINDRGEIVKTQTIDGYVGTTHEVTDATPTGYEVAKGF SVPGEVTIQPNDTPILIPVISKTVEVNHTDPKNPGDEIPNNPGKTFPDGVKETDLNRDVT RKIVEHKPSGDVTVQDQAVHFVRDATVNVATGEITYGEWKVEGERSHYDEYTLSLDDQVP GYIASRIKIDLSTPSADAGNQVIDVDYRPIQTIKFKAIDKSDNDQVIPLKNASLATLISG EGGDKIDDKQVYSYVQAIRSELEPRGYDFINYDNIPELIKEIKDGVINVYFKHQIVPVKP GEGKTPEEPVRPGDPESPKYPQGVENNDLTTPITRTINVKYPAGYSDGGSNAEHTETQTQ VVQYKRTALVDKVTGKFLGYTDGEAIGTDTWSEYVPDVAKGYGLTKESEQAPEVHVKAND KDVVVNMEIVPLPQKLIVKAYDAGKKVVVEVPFNGVTYQNIDSETVKKTVDEALKEKGYT ADWTSVEIPTRYDNDVDVDQIVELHTNLIPTPVTPENPKTNKGNKTPELPAKSTGKHDEP KTTTPLTPEANIPNKDVAKKITSSSTKLPQTGNDNSSAAGLGLAAMAVASLIGLAGKRKK DEKNK >gi|313656766|gb|GL545251.1| GENE 246 280505 - 281464 1180 319 aa, chain + ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 5 304 13 304 304 154 30.0 2e-37 MVFGAVILVGFIVCGLIYKNLRDTANKMYTPVAKSITSNKNRSFDNLLATKKPINILLLG TDTGALGRDWRGRTDTIMMLSINPNSNKTTIVSIPRDSNAIFPDYSSYGVAKINAAYTLG GVSETIKTLDKYYSVPIDGYILINMGGLEKAIDQVGGVDVTSPLTFDNQGFSFKKGKTYH MNGKKALAFVQLRHGDPMQDYGRQVRNRLLVMALLKKSISPSTLVNNSFLNSISNEMQTD LTMEQMYKIGMDYRRATNNLSQDHAQGTSKMTDNPKFGQMEIEVISQEERQRISDKIRST LDINKVQVNEERASYVMNN >gi|313656766|gb|GL545251.1| GENE 247 281478 - 282350 630 290 aa, chain + ## HITS:1 COG:SA2457 KEGG:ns NR:ns ## COG: SA2457 COG3944 # Protein_GI_number: 15928250 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Staphylococcus aureus N315 # 11 265 6 220 220 87 26.0 2e-17 MEQLQENNTIDLAQLLKILRRHLVSLLVWSFGFAIVAWGVSALIIQPKYTAATQLLVNQK TDKNDIGAAYTLQQANMQVITTYKDIVTSSKILKDASNLLANPVKVVREAQPAKYQTLAD GTKKLVKKAQSAVLERSGKSYMVSATQLSKAISVKTQQQSQVFSITATADTPEKAEAEAN AVAETFKNEIPKIMNVNNITIIADANKGKQSFPNVKLFTLAGLVLGFAVCLFIIILQELL NTTVRDDEFMTKKLGLTNLGQIEHYHLSNSFTISKVKKSTKSSRLRSRRV >gi|313656766|gb|GL545251.1| GENE 248 282357 - 283121 785 254 aa, chain + ## HITS:1 COG:BH3668 KEGG:ns NR:ns ## COG: BH3668 COG0489 # Protein_GI_number: 15616230 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 19 237 16 231 235 187 44.0 2e-47 MALFRKKRGTDETMHYGAKLITIAKPQSQITEQFRTVRTNINFKAIDHDINTLAFTSAAI SEGKSTVAANVAITYAQSGKKTLLIDGDLRRPTVHSTFSLSNRRGLTTILTSNNNKFNLD DFAQESGIENLSILTAGPIPPNPAELMGSKRMKTFIDFIKSYYEMVIIDLAPILEVSDTQ ELARELDGVVLVVRQAKTQKQAVKRAVEMLEFAQAHVLGYIMNDVKSEDAGYGYGYGYGK ENKEKKSLFLWLKK >gi|313656766|gb|GL545251.1| GENE 249 283123 - 283893 669 256 aa, chain + ## HITS:1 COG:BH3667 KEGG:ns NR:ns ## COG: BH3667 COG4464 # Protein_GI_number: 15616229 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus halodurans # 3 256 1 255 255 196 38.0 3e-50 MVLVDIHCHILPGIDDGARDWMTSMKLAREAVQNGVTHAIVTPHTLNGKYLNHKKDVIRL TENFQEMIDEAGLPLQVFPGMEVRINGKLPEAIDNDDILFCDEDGKYMLLEFPSNDVPTY SSNMVYELLQEGITPIIVHPERNTKIMDDPAILQGFLEQGCLVQITASSYTGIFGKKVEK FARQLIKAGQGCTFASDAHDLPKRQYQLSEAYDKLGREFGEKLVQAWKENAKNIINGDPV DMHWRPLKQRKFFGLF >gi|313656766|gb|GL545251.1| GENE 250 283921 - 284247 273 108 aa, chain + ## HITS:1 COG:all4829 KEGG:ns NR:ns ## COG: all4829 COG2148 # Protein_GI_number: 17232321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Nostoc sp. PCC 7120 # 23 106 51 137 252 70 46.0 7e-13 MENIRVESKAHDSVSERHYTYYFVKRSADIIVSLAALIVLSPLMLIISLLIYKQDKHNPI YIQERIGLHGKPFKMFKFRSMIFNADKVLMANPMLYQEYLKNDFKLPE >gi|313656766|gb|GL545251.1| GENE 251 284338 - 284586 90 82 aa, chain + ## HITS:1 COG:CAC3059 KEGG:ns NR:ns ## COG: CAC3059 COG2148 # Protein_GI_number: 15896310 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 1 81 142 222 223 100 53.0 8e-22 MSLVGPRPIVQKELHEYGKDLDEFLSVKPGALGLWQASGRSNIGYPERCDIELEYVRNAS IWFDTKVFFKCCISILKKDGAF >gi|313656766|gb|GL545251.1| GENE 252 285109 - 285393 248 94 aa, chain + ## HITS:1 COG:no KEGG:LBA1732 NR:ns ## KEGG: LBA1732 # Name: epsF # Def: galactosyl transferase # Organism: L.acidophilus # Pathway: not_defined # 1 88 169 256 257 129 70.0 4e-29 MNKRAFNSYCEFVFSVLEKLESKIDISDYSVQEARVYGYISELLMDVWLETNQFTCAEVN WGQIGGKQNIRKALHLIKRKLGIGKKKHIFKLGI >gi|313656766|gb|GL545251.1| GENE 253 285394 - 286467 453 357 aa, chain + ## HITS:1 COG:rfaB KEGG:ns NR:ns ## COG: rfaB COG0438 # Protein_GI_number: 16131499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli K12 # 11 353 20 359 369 152 31.0 1e-36 MKKVIIAVPYLSGKGGTETVINNFGEALKQNSQSEFQWLLVNFGGSKYPTWMKNWNRKVF NFSNNRLIQNLCYITIMPFLLMYLILSEKPDFIVSTNPVIWKFSKIFSSCLSSKTKVIAW YHYSFKKKNVNQFFLKNIDGFWAISTGIKEELISLGVPKDKIHIIFNPINTEDKHEEIKR SGNQNKFIYVGRIDYDGQKNVSELIKALSLVNGDWSCDLYGSIDTETKNRLENLIQKCKI TNPIEFHGFSENVWEQIKEADALIMTSKYEGFPMVLCEAASRGIPLIAANCPTGVSDIVS DENGFLYQPGDFELLGEIINNIISKRKLFPSEKAIKESMQRYGYQEYIARVSRNLCN >gi|313656766|gb|GL545251.1| GENE 254 286486 - 287382 745 298 aa, chain + ## HITS:1 COG:MTH343 KEGG:ns NR:ns ## COG: MTH343 COG1216 # Protein_GI_number: 15678371 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Methanothermobacter thermautotrophicus # 3 259 2 282 328 110 29.0 3e-24 MKKVDCVVVTYNRLNLLKECIQSILNQTYPVNHIYVVNNNSTDNTINYLAEIAKNNTKIV PINLTENVGGAGGFNIGIKKFIKANTADFVWIMDDDTIPQEQALENLIRKDDILDSWGFL CSNVRWKDDSAANMNVPTVERDWNQLAKLGLIKVKAASFVSILFPKKIVEAVGYPISDFF IWGDDVEYTKRITKLNYDGYLVSDSLVEHKIETNITTDIVLEKDRNRIKRYFFANRNAVY TTKKLEGNARLVELLLKKLGYEPLKILFKSKDYKLFRLKYSLKGTLWGLFYNPKTEKY >gi|313656766|gb|GL545251.1| GENE 255 287413 - 288663 589 416 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1173 NR:ns ## KEGG: FI9785_1173 # Name: not_defined # Def: oligosaccharide repeat unit polymerase # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 5 398 15 409 419 134 30.0 5e-30 MKPKKIFLNLLNYCIASFILLNANTVYIHSNPKVYQICQMIFPIICLFFIFISFCFNDFK IDYMFFFGIGVSLYILMWVLYQIAFLGGNRTSLLIPINFCLIFLLIWTQIKKNNLIQLTN AYVNLVVIVAAISIVFWLLTNIFHKLIPSNYVLLYWGYERFIPNYHNLYFETQQWGDIFR NTAIFTEAPMAALNFLVALAFNMIFLNKTKLAKFKSFILIIAGLMTISTTMYIGILALLI YRFFEKTARANKYISLIKFIFIIILFVISAVIVNSLINSKLQTGSGIDRSSDYINGINAW INHPIMGNGLNAGINEGTTIINGEVIGHYGFSSSFSQLLGDSGLFLVVPIFLSILETIRK SIFIKEWKILILSILFMYLVFVSIFTTTYLFMYLLIFIVMWNFSDISELNRKAHLE >gi|313656766|gb|GL545251.1| GENE 256 288660 - 289769 1470 369 aa, chain + ## HITS:1 COG:glf KEGG:ns NR:ns ## COG: glf COG0562 # Protein_GI_number: 16129976 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Escherichia coli K12 # 2 365 3 362 367 459 60.0 1e-129 MNYLIVGAGLFGTVFAREAANRGNKVTIIERRNHIAGNIYTKEVDGIQVHQYGAHIFHTS NKEVWNYVHQFAEFNRYTNCPVANYKGHMYNLPFNMNTFSEMWGVKTPQEAMDKINEQRQ EMAGKAPQNLEEQAISLIGRDIYEKLIKGYTEKQWGRKATELPAFIIKRLPVRLTYDNNY FNDDYQGIPIGGYTKMVEKMLDHPNITIELNTDFFDKKDEYLNNFDKVVYTGMIDKFFDY KLGELEYRSLHFETEEKNVGNYQGNAVINYTEAEIPYTRIIEHKHFEFGKGDKDKTIITR EYPADWKRGDEPYYPVNNNRNNDLYKKYAELAGKQDKVIFGGRLGQYKYYNMDQVIAAAL EAVNSEFGE >gi|313656766|gb|GL545251.1| GENE 257 289775 - 290947 909 390 aa, chain + ## HITS:1 COG:CAC1053 KEGG:ns NR:ns ## COG: CAC1053 COG0438 # Protein_GI_number: 15894340 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Clostridium acetobutylicum # 167 382 169 393 466 61 25.0 3e-09 MKKIKIGYVSPVNPEEDRMAWSGTYYNTFHAIRDAGIDVKWISYGTNTFLFKFVTFITKC AYRLIYGKGSSEHSRIMAKVHGLFIKRSQLEDCDVVFIPAQIDMVVGIRTNLPIIYYADG TFKKMINYQWFGYTQSAIREGEKTELLGIAKAKYNFRSSQWAADSTIKDYGAPEENTYIF PFGADVPQERKFSSEPIYKNKSLKLLFSGKEWERKGGNIAVDAARYLNGIGIKTTIFIVG VKELPKQYSGDKFIKFIGYLDKNNGKELKKYLKLYSECNAFILPTRAECAGIVFAEANSY GMPIFATDTGGIGNYVINGVNGYRLPLSATGKDFGKLIEKVYKNREFSQLSKGALKTYSE KQTGRVGQIISGILLSKIFRYSLISNYLLN >gi|313656766|gb|GL545251.1| GENE 258 290956 - 291942 481 328 aa, chain + ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 6 218 5 215 328 115 32.0 2e-25 MKNEILISIIIPVYNVERYLHSCLNSLISKNMKSVEIILVDDGSSDSSGDICDKYDNKYD FVRVKHISNQGVSYARNLGLKMARGKWISWVDSDDTVCPGFIDIIKKLVQIEKIDVFKFG YQVLDLNTNFKMSQKSFNPKSLISETKEMAMYDLASVKYGNYLWCRLFKKKLFNNLEFPV GNNCEDAFLMIEILNNAQNFALYDELLYYHFSRPNSVTHNSDKTKLMLQSKDWFESNIRL TNKLKEYGFQKAYEKSESSILDIAYFLARDIDFRGYPDVGIYAKADEILNNYKKYINPTT SKKRIIQFFLRSKCRFFYDYIYRLSGKV >gi|313656766|gb|GL545251.1| GENE 259 291972 - 292283 195 103 aa, chain + ## HITS:1 COG:no KEGG:LA2_09530 NR:ns ## KEGG: LA2_09530 # Name: not_defined # Def: EpsN # Organism: L.amylovorus # Pathway: not_defined # 4 103 9 108 493 146 71.0 3e-34 MKRKKSLGFNGLLNGVRSALNLVFPLITFPYITRVLSVGSVGAYNFSNTYVGYFILLAGL GISTYAVREGAKYRDNREKLSKFASEIFAINLWSTVVSYVLCL >gi|313656766|gb|GL545251.1| GENE 260 292274 - 293410 728 378 aa, chain + ## HITS:1 COG:FN1682 KEGG:ns NR:ns ## COG: FN1682 COG2244 # Protein_GI_number: 19705003 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Fusobacterium nucleatum # 6 309 107 415 486 75 22.0 1e-13 MFMSLLIFRNLQTYLLFILIFSVQIFFTTVGIEWIYIINEDYSYITARSIIFKIISIVML FLLVKSRNDYLWYAGITVFSSVGSNVLNYINANKICDIRLTTNINWKKHLKPIFIIFAST LAVNIYLSSDTTILGIMKSDYDVGIYSITVKIYNIVATLLGSVMTVTVPRLSMLMGQGKM KEYKETFIRVINVLALLVIPGTIGLMMLSQEIVLLIAGPKYLESTNALRIIGLAVIFSNF SFVFYNCVLIPAKREKQGLFNTIAAAIVNVLLNICLIPMFAYDGTSFSTVVAEIMTTVMN FWAGKDIIKSTVFSKRVIHNLFTVLIASIFVAISCWICKLIFASLLLRIGASVISSGIVY FVALVLLKNELVVSKLKR >gi|313656766|gb|GL545251.1| GENE 261 293485 - 293700 60 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855750|ref|ZP_04646045.1| ## NR: gi|238855750|ref|ZP_04646045.1| putative acyltransferase [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] putative acetyl transferase [Lactobacillus jensenii 208-1] putative acyltransferase [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] putative acetyl transferase [Lactobacillus jensenii 208-1] # 1 45 1 45 338 81 97.0 2e-14 MKFKRIEWIDFGRGFTIFLVVVGHVLSGIYTNHIYPNSDGLLMFLVNSSFYLSCRYFSHS LVISLKHQKIW >gi|313656766|gb|GL545251.1| GENE 262 293643 - 293828 75 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855750|ref|ZP_04646045.1| ## NR: gi|238855750|ref|ZP_04646045.1| putative acyltransferase [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] putative acetyl transferase [Lactobacillus jensenii 208-1] putative acyltransferase [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] putative acetyl transferase [Lactobacillus jensenii 208-1] # 1 51 54 104 338 89 100.0 1e-16 MPVFFSLSGYFFKAPENMVDYIVMIKKKAWNILVPYIVFSFVYVLLNQLGGSLRSIAGAI C >gi|313656766|gb|GL545251.1| GENE 263 294296 - 294499 74 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855750|ref|ZP_04646045.1| ## NR: gi|238855750|ref|ZP_04646045.1| putative acyltransferase [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] putative acetyl transferase [Lactobacillus jensenii 208-1] putative acyltransferase [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] putative acetyl transferase [Lactobacillus jensenii 208-1] # 1 67 272 338 338 109 100.0 7e-23 MVHAPVLSAIRAIILKFTMPNVFVLMVVLLIIGWVSCLVVIWMNNRFRLINFIFNAYANV KKIKNKR >gi|313656766|gb|GL545251.1| GENE 264 294758 - 295798 190 346 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855751|ref|ZP_04646046.1| ## NR: gi|238855751|ref|ZP_04646046.1| hypothetical protein LACJE0001_1529 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative membrane protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1529 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] putative membrane protein [Lactobacillus jensenii 208-1] # 1 346 1 346 346 497 100.0 1e-139 MITLFLSIISLFYLTTYIIYIDKFDSTFKKVPKLKFINQLFQLYSNHLLINKILLMTILY FLKFPIYSILFYVALLALFLLNLNGYEYFFLLILCMIHPRNSENDVIIAIYTLIFIIVTL SQVVDYPIQKEQDLSKSIVKCIKSLTVYFVYAIQYVYSLKMMYQYTHHTINWNNLIPFII FGYLLIISLIGIQTVVRLTLWLLLLGTATKFNNFSIIFSLLITVFSFQKNCQSFFNNETW EPKQKIKVIYAKVKDTISFLIFELSLLSYIWNYFNLQESNLFDKLFKFIGMDNPFCQNLF LFSILSIIIHGFMLLIRKLVCKKRRYGSSNCDKDIKFFYVIVQRLY >gi|313656766|gb|GL545251.1| GENE 265 296119 - 297297 1093 392 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 266 297515 - 298024 154 169 aa, chain + ## HITS:1 COG:no KEGG:Arth_4268 NR:ns ## KEGG: Arth_4268 # Name: not_defined # Def: hypothetical protein # Organism: Arthrobacter_FB24 # Pathway: not_defined # 8 163 6 164 179 104 37.0 1e-21 MVEKSQYFKNLIKVVVDNSESKDWKSAVDEWKIIDVVEDEKLEESCICGKEHLRYLFTIK NEENGRKLYPIGRLCIKKFERKELKDEVNIKEQLFKLLHAVEDNEFLQLSSEYFSRKLLH YLYEAGAFKATQWNDNDPKKTINFYVICLTKRRELKNRIRKQLLLFLVQ >gi|313656766|gb|GL545251.1| GENE 267 299732 - 299908 200 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|260664544|ref|ZP_05865396.1| ## NR: gi|260664544|ref|ZP_05865396.1| predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] # 1 58 26 83 83 109 100.0 7e-23 MGTNHEKVITGSYVHIYSPNGKYDKKNVIPISKFSEFVNIKSIKECLDPFIKYTNIKW >gi|313656766|gb|GL545251.1| GENE 268 299924 - 300712 592 262 aa, chain + ## HITS:1 COG:no KEGG:HMPREF9243_0879 NR:ns ## KEGG: HMPREF9243_0879 # Name: not_defined # Def: hypothetical protein # Organism: A.urinae # Pathway: not_defined # 1 220 1 220 261 120 35.0 6e-26 MNKAELLKNSYYNWLNEELTFTEQDNYVEITTPFLDSVFDNICIYAKFAKENSVELSDFG QTLFNLEGQGISIQEKNKKIWNSFKTILDDFGISIEGRSLVIITPLDKFPTAKNRILQAI MKVNDLVFMYTNKSQSSFDEIVSDYLSDNKILFTKNIQIVNTSVAASIFDFSIPFENGRS KLIKTVARPNDYNSAKIFNYDVKACLPIRSSDQFVCLFNDQKGKQVDPSTINTALEGVNT SVARAFSFSEAQENNVLDNKEL >gi|313656766|gb|GL545251.1| GENE 269 300753 - 301916 205 387 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855107|ref|ZP_04645434.1| ## NR: gi|238855107|ref|ZP_04645434.1| hypothetical protein LACJE0001_1610 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative membrane protein [Lactobacillus jensenii 208-1] hypothetical protein LBJG_01461 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1610 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative membrane protein [Lactobacillus jensenii 208-1] hypothetical protein LBJG_01461 [Lactobacillus jensenii 1153] # 1 387 1 387 387 665 100.0 0 MLIKDSLWEKVLDSWRNGYKLPTKFYFYMAFLEIVGSLLLLCSAKSGQTSQSLLSKFYNY IYSDVGLNIVLVIALIFAFLLFILPNSENVSSSIKERLKKTKVQKIIGWIRKNKCFQAII RWIRRKKFTQAFIQIIRKIINFFKTRVQKIRKNKHFQAIIQVLYKSTYYLAFVIVFYFTI LFTLPGYLNLISSMTNTAPLFIMIGYNYNMLCYINLSFGGVALIMSCIQFRNPSIDKNIE LDKNALNSGCLKKVSDIDYYFDSKYVGNTTFYKLRWVGNINRKKVDCLDFIIKNPILIFY YICMCITYVIILGLCYLNFPILQIILFWKFLISVFLVLIIFTIVKNLKNSVILVKKYKFK IIISAPSYEELLRREKFIKSFDKNVLP >gi|313656766|gb|GL545251.1| GENE 270 302191 - 303030 495 279 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 8 231 11 236 293 172 42.0 2e-41 MSYNDGKFYGFTNDEIFGSIMQNKRFCKAIIKAVLPDVNVVSVESIDTQKELGTKSDKRS KSVRLDIAVKDQAGNLYDLEMQVNNNHDIGPRMRYYQSSMDRDTLDRGEPYTSLARTYLI FLCAFDPFGKGKLRYSFHLYDDEDKDIQLENNAENIIINSKGTGSDDVDLLNLQKLMNDD KIEVAGVFKEIQTKIKEYNDDPKRRNLMRTAELRMKEETAVAERRGREEGREEEQKNTVK VFKILKPEATVAEGLAWIRKNTNVSLSDEEIKAILSRSN >gi|313656766|gb|GL545251.1| GENE 271 303055 - 303282 248 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855109|ref|ZP_04645436.1| ## NR: gi|238855109|ref|ZP_04645436.1| hypothetical protein LACJE0001_1612 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_2745 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_01463 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1612 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_01463 [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_2745 [Lactobacillus jensenii 208-1] # 1 75 1 75 75 114 100.0 3e-24 MRTAELRMKEETAVAERRGREEGDKNTVKVLTATIKEMRPHINESTLFKQIKKSVGPNFS LSDTEIMDIIRQNLK >gi|313656766|gb|GL545251.1| GENE 272 303443 - 303886 461 147 aa, chain - ## HITS:1 COG:CAP0107 KEGG:ns NR:ns ## COG: CAP0107 COG0789 # Protein_GI_number: 15004810 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 2 113 3 115 152 93 42.0 2e-19 MYSIGQVAKIFDLPISTLRYYDKEGLFPDMQRKGNQRIFTERELECLRVIACLKKSGLEI KDIKQYFVWCREGQATYKFRQEMFNKQRQEIEYEIKQLQATKAMLDFKCWYYEQLLNQNV KDEVDLQRKIDQRKMPTSVKKAYELSH >gi|313656766|gb|GL545251.1| GENE 273 303988 - 305022 1341 344 aa, chain + ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 1 342 1 343 348 420 60.0 1e-117 MKAAIFKEKGQMEVVEKPVPELNFENSAIIRTVRASVCGSDLWFFRGIDQEESGKVTGHE AIGIVEKVGPAVKDVKPGDFVIAPFVHGCGHCPACLAGFEGECQNNPAPFNNHFQAEYFE YNNANWGLVKIPGKPEDYTDEELASFQTLADVMPTGFHAAKMARVKKGDTVVVLGDGAVG LCAILSAKFLGAKKIIATSRHADREALAREFGATDNVAVRGDEGVKQIRALTNGAGADAV LECVGSELSMDTAVKVARAGAMIGRVGVPHDEKLNSNQLFFGNLGVQGGPASVTTWDRKY LLDAVLKHEINPGRVFTAQFKLDNIQKAYEVMDQRKAIKSLLVF >gi|313656766|gb|GL545251.1| GENE 274 305980 - 306423 630 147 aa, chain + ## HITS:1 COG:BS_aspB KEGG:ns NR:ns ## COG: BS_aspB COG0436 # Protein_GI_number: 16079294 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Bacillus subtilis # 1 143 1 142 393 151 53.0 4e-37 MRLSKRIQAVTPSATMALSSRAKELAMQGRDVINLSIGEPDFNTPDFIGQAAVDAIKKSK TDSYTPAGGLLELKEKIVDKINSEHKTHFSNQNIAVTTGAKYALYVLAQVLLNPEDEVLI PLPYWVSYGEQVKLAEAKPIFVKPKKG >gi|313656766|gb|GL545251.1| GENE 275 306471 - 306974 413 167 aa, chain + ## HITS:1 COG:SP1544 KEGG:ns NR:ns ## COG: SP1544 COG0436 # Protein_GI_number: 15901387 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 158 167 323 395 180 53.0 1e-45 MLIINSPNNPSGQVYSRSELEAIGKWAAERQITIIADDIYGKLVYNQTKFTSLLDLDEAI RQNVILVDGLSKTYAMTGWRVGYIAGSSEMIKAVNSLLSHSTSNLSAVSQYAALAALTGD QACVEEMRSEYEQRLNILVPLLDNVTGFKLSEKPQGLFIFSQILVKL >gi|313656766|gb|GL545251.1| GENE 276 307291 - 308448 797 385 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472016|ref|ZP_07812508.1| ## NR: gi|313472016|ref|ZP_07812508.1| hypothetical protein LBJG_01605 [Lactobacillus jensenii 1153] hypothetical protein LBJG_01605 [Lactobacillus jensenii 1153] # 1 385 1 385 385 709 100.0 0 MKNNLFRRNTAIALTSVMLTTGVVTAMPKQALAESNVNTASNQSLGASLVNNTGVGAYSE EVAGLKHGTAIQTMQDSSLQSTSSSIVDLDKTQGKFYALANVENTTNEEQHFIQAIVLPK FYKGSNPDPNKVDVVLDSSQVPETGLSFGLKNEKIQYAIKQGKYRNLDRLARENPGFTWD QIIGIKIDGYLAPKQSFSGKIPLAVANYNRMQDQLTALANNTAEKSIISNIGLRQFSVGQ SFYYYKNGEIQTTYDGHLIARVGKEITRLEQIIAQADLKKYQAKTLSFMADGTRVYTSVP ADIEKLLPAITADDFIYYNFGSSYPSSRALYTDGIYAIKIRRIFDAIKMMAIALTSSQMV VKFGNNINIHLQVIVIGLLIIVVAT >gi|313656766|gb|GL545251.1| GENE 277 308586 - 308975 258 129 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855937|ref|ZP_04646224.1| ## NR: gi|238855937|ref|ZP_04646224.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] putative gram positive anchor [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 269-3] putative gram positive anchor [Lactobacillus jensenii 208-1] # 1 129 433 561 561 152 100.0 6e-36 MALTNQHTLKSDEYKVEDNVDTSKAGVYHVKYSYEINDNDIVTKTAKVTVLDKKKQSNNS SSSASSSSTSSSETSNKHSEGSTSEKSSSSTSSKKEAELPQTGTTTIFALVTGLIAVICS ILLVKKNKE >gi|313656766|gb|GL545251.1| GENE 278 309378 - 310256 778 292 aa, chain + ## HITS:1 COG:lin2250 KEGG:ns NR:ns ## COG: lin2250 COG0583 # Protein_GI_number: 16801314 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 8 253 2 246 284 87 28.0 2e-17 MVLTSLFDYRLKTLVVLVRTKSFTLTAKELFISQPAVSQQIHSLEKDLGFRLFYRSGKSI ELTAKAMELVGYVQRINSDSSRVLTEIQKDDKKRLSIGASLSLSSFLLPNLLAKTINDEK TPKVDIANTKILLEKIKLGELDFALIEGNFDKSEFDFYKLSDYPMTLVTNPRTYPIDQWS DILKQPLFIGTEGCGTRDIFEKLLAAHNFSLSDFKNVIEVGNPITVIEMLKQGEGISFLY RQLIGDDLKRNELIEIKTIPEFNVKHSINLVFAKGSSYKERYQQIATLVKHL >gi|313656766|gb|GL545251.1| GENE 279 310358 - 310537 311 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855935|ref|ZP_04646222.1| ## NR: gi|238855935|ref|ZP_04646222.1| conserved domain protein [Lactobacillus jensenii 269-3] conserved domain protein [Lactobacillus jensenii 208-1] conserved domain protein [Lactobacillus jensenii 1153] conserved domain protein [Lactobacillus jensenii 269-3] conserved domain protein [Lactobacillus jensenii 1153] conserved domain protein [Lactobacillus jensenii 208-1] # 1 59 1 59 59 63 100.0 7e-09 MSDKLAGKAKEVEGKLTGDKAREAQGKAEGLLGKAKEKINDVKEDVMDKAKEIKEKLDD >gi|313656766|gb|GL545251.1| GENE 280 310975 - 312429 1505 484 aa, chain + ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 7 484 5 472 472 445 53.0 1e-124 METFEKVKWKQFILPVVIGLVIWFIAPVRPAGISLDAWHMLAIFIATIAACITQPMAIAG VTLIGFTMTVCLGLAPIADVMKDGKLVQKGALSAFSNSSAWLIVMAFMISRGIIKTGLGR RIALYFIKWFGKKSLGLGYAIGAIDLITSPATPSNGARAGGIVYPLINSLANTFDSHPND DSRKKMGAYLVFTEFQTNIITSSMFMTACAPNLIAVSLAGKAGINLNWMGWLAASVVPAV ICLVIVPYLVYKLFPPQIKETPNAKEWANEHLQEMGKMTAPEKVMAIIFAATLVLWMLSS SIKLDATTVAFISLTLLLLFGILTPKDVLKETGAWNLLIWLSILVFMAGKLTQFGFIAWL SKEIEISVKGMNWLLVLVILALILFYTHYLFASATAHNTAMYLPLLIVAVSAGAPKVLAA QFLAMFSAIMGSTTHYSSPASSVLSASGYVNQKEWWNLSFIFGLLYILVYGVIGLLWMKL IGMW >gi|313656766|gb|GL545251.1| GENE 281 312899 - 313354 315 151 aa, chain - ## HITS:1 COG:AF2127 KEGG:ns NR:ns ## COG: AF2127 COG0583 # Protein_GI_number: 11499710 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Archaeoglobus fulgidus # 5 116 13 129 324 69 36.0 3e-12 MYKELETYLSVVQNGSFSKAAKELYISPSAVFQQINNLENHLGVKLLIRTSHGVKVTEAG KILVKRAQEMLALCRQTQSELKYFKKQITLGSGFLTQNLEFQKLIKKSQIDVSISFAEIK DYNSISDVVDLLETIYTPDLAKQGFSFQKFL >gi|313656766|gb|GL545251.1| GENE 282 313483 - 314949 1547 488 aa, chain + ## HITS:1 COG:L137630 KEGG:ns NR:ns ## COG: L137630 COG1053 # Protein_GI_number: 15673106 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Lactococcus lactis # 2 456 57 469 502 111 23.0 3e-24 MENYDLVVVGAGSSGISAALTAAEAGLKVALLEKGDKFGGAGMFGAQGLFGANTKLQKEA GVNYSVKDAYEEILNYTHHRSDARIVKAIIKESAETLAWMSKNGLATELVTNTQEVHQNH PRTYHQYIDKFNGFKKMINKFENLSGSLFLKTSAKKLLQDNGRLSEIEITHDGTDECMNT KNVILADGGFIGDKDLVKKNVNIDLNNLYSMGERKATGDGLRMLGEIGGVNNYKPLLENH AASIVTNDKNPWENASLATLSTLPLLWVDNSGKRFTNEDVVYDFALWGNVTYTAGGYYYI IIDQDFVDYISKNELDWTGSFERTFTLLQHLPMTHKVGPMKTLKQELDTALTSKAVFKAD SLTDLAKLLNIDENNFVETTNQYNKLISKHVDDDFYKDQKFMKFPICNGPFYALKAISTT LGTVGGGLVNEKFQALTAGRKVIPGVYVVGNNAAGMFDSAYPTIEGLSNGFAWNSGRIAA KTIAKLNK >gi|313656766|gb|GL545251.1| GENE 283 315047 - 316024 328 325 aa, chain + ## HITS:1 COG:BH3692 KEGG:ns NR:ns ## COG: BH3692 COG1609 # Protein_GI_number: 15616254 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 6 279 3 285 337 82 24.0 1e-15 MSKKFTMQDIAKIANVSKSAVSIAINQNSGISDNTRKKILKIADELGYKKSSTNLSFEKK LRTVDFFMTVEDIQQNNFFFLRNAVEKKGKQLGINISFKLLPKNKLISQTEIICDIPSIF LATNFSSKLVKALQTKFKYCVFLDVNLANVTANFVAIDNFQEAYSIVEYFYKKGCRKVGY LGARTLNGNFAERRYGFNSAISDFNLSFTNFDFIVGSLSDDAIDSQEIAKIRKMKNLDAF LCESNCQALRLTKELQILKFSIPNDVIVVGFTNLLDSKYWFLNIDKNQFLLDQMLNQAIS QLQNMISTVNWHPQRSLISWELKFS >gi|313656766|gb|GL545251.1| GENE 284 316049 - 317062 705 337 aa, chain + ## HITS:1 COG:BH3230 KEGG:ns NR:ns ## COG: BH3230 COG1609 # Protein_GI_number: 15615792 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 4 336 5 350 358 122 27.0 8e-28 MKAKMSDIAKKAGVSIAAVSLVLNGKPGVSEKTRKKIFKIIKESDYVPLRQKRESTRVIA NVNLIIISDQHGVVNEIYQKNPFFDTLVQCTAEHIDKFGGTLQINTVQIESLHEEINRII SRTTVVNAIVLATDLDENDIDFIESKIKNVVFVDTSFRKLRADFVTPDNYQGAYAAGMFL LSHNYRRIGYLASNKATQNFLSRREGIRDSLATQNIKLAKNDFYVVDFANLFSENSLNCI DYNDLPEAFFCENDIIAIRLIKELTHRNFRVPRDIGIMGFDDVSTAALCSPELTTVHIPT IQIVEQAVRDLQAQVASKDFRGQKTFITTEIIEREST >gi|313656766|gb|GL545251.1| GENE 285 317261 - 318187 818 308 aa, chain + ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 1 302 1 303 304 261 50.0 9e-70 MKNKVCVLGSINLDTTLHVERIPLPGETVPVSDKSSAPGGKGANQAVASARSGAKVHFIG AIGDDNSGQTMLRSLKEDNIDLTNITKSDKAGTGTATIMLDENGQNSILVYPGANKEINL TQIKNAESLIASMDFIVAQFETPIKETTLAFQIAHKHGVVTVLNPAPASHIPDELLGETD IIAPNETESFAITGIKADSLSSMNKSANYFRDKGVKATLITLGDKGVYYSYDKQAKIVPA YKVKAVDTTAAGDTFLGALSAVLKKDLSNLEVAIDYGEKASSLTVQRNGAQPSIPTFSQI NKFYGGEK >gi|313656766|gb|GL545251.1| GENE 286 318187 - 318582 518 131 aa, chain + ## HITS:1 COG:SA0259 KEGG:ns NR:ns ## COG: SA0259 COG1869 # Protein_GI_number: 15925972 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Staphylococcus aureus N315 # 1 131 1 134 134 130 56.0 4e-31 MKKIGVMNSDISRVIANMGHMDWLSIGDAGMPVPKDTEKIDLCVQSELPSFIDVLKNVLI ELKVQKIYLAEEIKEQNPKQLENIRSVLPDVEIEFVPHKDLKKMLGNTHAFIRTGETTPY SNIILESGVTF >gi|313656766|gb|GL545251.1| GENE 287 318604 - 320082 201 492 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 233 478 10 248 329 82 26 8e-14 MKIEMTGIKKAFGSNHVLKGVNFTINSGEVHALMGENGAGKSTLMNILTGLLSKDDGSIK VDGTETSYSSALEAEHAGISFIHQEMNNFPDMSVVDNMFLNKELKTKFGLMNQRAMIKQA TEYLNHLGAQINVTQKISNLTVGQQQMVEIAKSLMTDAKIIIMDEPTAALTTNEIKILFK TINELKAKGVGFIYISHRMEELWEICDTVTVMRDGVSINTYKIKDVTENQIVHDMVGRDI GDYYPARNPKLGPVALKAENLCGEKFKNISFEVHEGEVLGFSGLMGAGRTETMRALFGID KLTDGKVLVHGKEVHIKNPSDAVALGIGFLTEDRKTEGLVLDQSLRDNIALPSIEGFKKH GIIDEKTETSFVNMLMKRLTVKAENPFVTAGSLSGGNQQKVVLAKWVGSGAKILILDEPT RGVDVGAKKEIYELINQLTDRHVAVIMISSDLPEVLSMSDRIEVLYEGKQMGIVDAKDAN QEKIMKLATGGK >gi|313656766|gb|GL545251.1| GENE 288 320084 - 321040 1073 318 aa, chain + ## HITS:1 COG:BS_rbsC KEGG:ns NR:ns ## COG: BS_rbsC COG1172 # Protein_GI_number: 16080648 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Bacillus subtilis # 10 312 19 319 322 297 57.0 2e-80 MDKARKKLDLSKYMALIALVVLVILITFLNPQFIAPSNLMNLLRQSSINCLIAFGMTFVI LTGGIDLSVGSVLAFTGAVAATLILSGTPVWLACIVCLVLGAVLGGVNGFLISYGKVTAF IATLATMTIWRGATYVFTGGNPITGPNMNNSFFFQFIGNGYLFGIPFPVIITLLIFAAVY ILLHKTAFGRKTFALGGNEKAAFVAGVKTKKIIVVIYVISGLLAALAALILTSRLSSAQP DAGTSYEMDAIASAVIGGASLMGGKGRMQGTLVGALLIATLSNGMNLLGINSFYQQIVKG LVILVAVMIDSQSQKKNG >gi|313656766|gb|GL545251.1| GENE 289 321059 - 321574 717 171 aa, chain + ## HITS:1 COG:BS_rbsB KEGG:ns NR:ns ## COG: BS_rbsB COG1879 # Protein_GI_number: 16080649 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus subtilis # 53 168 37 152 305 124 55.0 7e-29 MFFNHISKNLTKIATIGSVLVMGGGLLGGCGATGLNSDAGSSTSKVVKKAPSKLKIGVSI STLSNPVFITLKNELQKYSDKKGSKIIINNANNDTSKQNNDVEDLIQQKVDAIIVNPCDS SAISTVIQKANDAKIPVICIDRGADRGTVVSTVASDNVAGGKMAADYLIKN >gi|313656766|gb|GL545251.1| GENE 290 321577 - 322044 474 155 aa, chain + ## HITS:1 COG:BS_rbsB KEGG:ns NR:ns ## COG: BS_rbsB COG1879 # Protein_GI_number: 16080649 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus subtilis # 3 148 160 305 305 147 52.0 1e-35 MKAKIAELQGIPGASATRERGQGFDKIADKKLNIVSKQTAQFDRAKGLSVTENILQAHHD VKGIFSQNDEMAVGAARAVKASKKDIVIVGFDGTNDALKLIKSGQMTATVAQQWDKMADT SLDAVYDYYQGKTVKKNNLVPVRLITKENVDSMLK >gi|313656766|gb|GL545251.1| GENE 291 322192 - 323274 914 360 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 360 33 391 391 357 47.0 1e-98 MLESELTAFLGYDPYARNGWNTGNSRNGAYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPD YKQHTDLLEDMVIKLYSKGVTTREIANLIEKMYGSHYSPAQVSNISKQMIPKVEAYHKRK LSDKFFCVYLDTTYIPLRRETFEREAVYIAIGIKPNGHKEVIDYCIAPSENIEVWTALLQ NMKSRGLKQVELFLSDGVVGMKAALAKTYPQAHFQRCLVHVMRNICAKVRVDDREAIMNE FKQIHQQANKAAAVDVLHAFYAKWNKSYNRVIRNLKDIEPDLLVFYNYPKQIRASIYSTN MIESFNNVIKRKAKPKAEFPTEQSLDTFIGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 292 323514 - 324221 597 235 aa, chain - ## HITS:1 COG:lin0901 KEGG:ns NR:ns ## COG: lin0901 COG2188 # Protein_GI_number: 16799974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 235 1 235 237 159 40.0 5e-39 MKKYEQIATEIERKIISGEYKDFLPKQIELAKEYDTSRVTISRAFNLLKDREIIDPIKGH WTKIKSKNISKLLIDSDANKTNGFTNHSLGGGIVTSHIIAFDQRMPTDEECQVLRLAKDD LVYDIIRQRLLNGIPAKLEYTIMPVKVIPGITDDILHKSIYGYIKEHLHLNFGKANRIIT AEKPDAYDIKYLDCSKDDPVLCVRQIKFLDDNTPFEYSETRNKYNYGSLMIYDSK >gi|313656766|gb|GL545251.1| GENE 293 324341 - 324850 406 169 aa, chain + ## HITS:1 COG:L32812 KEGG:ns NR:ns ## COG: L32812 COG2723 # Protein_GI_number: 15672801 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 2 161 7 167 453 219 63.0 2e-57 MEKFFWGNSTSSMQTEGGWNEDGKSKSVYDIRTATESSSDWKVANDNYHNLSEDLDLMKD LGLNMYRFQVSWSRVMHDGDGNLNSKGLEFYDQLVQGLLDRGIEPMICLYHFDMPLKLAN EGGFLNKKVVDDFIRFGKIIIDHFKDKVKYWITFNEQNYTFNQELLIMQ >gi|313656766|gb|GL545251.1| GENE 294 324910 - 325701 633 263 aa, chain + ## HITS:1 COG:L32812 KEGG:ns NR:ns ## COG: L32812 COG2723 # Protein_GI_number: 15672801 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 1 260 195 449 453 253 48.0 2e-67 MYAHACLANYLHDTSNNKIGGMLAYAATYPSTCNPSDQLLVARFNEFVNNSLLDAFVRGS YSPAVISFVKRYHLHLDIEKDELAEIKKMKSDFIAFSYYRTDVIDASKVPVDCAPNYYLK YGKTRNKYTRSNYWDWNIDPQGFRKVMDDIYYRYRVPVFPIENGIGLLEHWDGLHQIDDQ LRIDYMREHINELKKAQKEDGVEVLGYLGWGLIDILSSSGNMDKRYGVVYVNRSNHDLKD MKRIPKKSFYWLQNVIKTDAKFI >gi|313656766|gb|GL545251.1| GENE 295 325713 - 327020 1301 435 aa, chain + ## HITS:1 COG:SP2022 KEGG:ns NR:ns ## COG: SP2022 COG1455 # Protein_GI_number: 15901843 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 5 429 1 425 431 519 67.0 1e-147 MNNSMQNSKLMQGFTKFAVKLGNQIHLRSLRDAFATIMPLYILAGLAVLLNNTVFTWIFK GKALERIQYWGVVITNGTLNISGILIAGLIGYQLAKNRKFTNPLASAMVSIATLIVMMPN TVQVIPDVAKKAVSVSAVMPFSNLGTGAMFSGVIVGLLATEMFVKLSQIKALHINLGQNI PPAVGQSFDVLIPILIVISFFAVISAMLNNMAGMNLINLITTFIQEPLRHVGTSLWGTIL LYSLGNLLWLFGIHQAVIYSSILEPLLIVNITQNIVAYQAHKAIPNIINVSLVQSFGLIG GSGCTLCLLIAVFLVSKNKAARTVGKLAVAPGIFNINEPVIFGYPIVYNISMAIPFVLIP SLGILISYTATTLGLMSPCVIQVPWTTPVFLSSFLATAGDWRAVIVQLIVVVLGVLIYIP FVKMNDAVVVAQAGN >gi|313656766|gb|GL545251.1| GENE 296 327124 - 327990 786 288 aa, chain + ## HITS:1 COG:no KEGG:EF0617 NR:ns ## KEGG: EF0617 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 284 1 284 292 387 78.0 1e-106 MMKNILLLLIVAINAYFLVMFLLDINKNKKKLKQEKADGRILPFTSFIMFFLSTFGISDF AIGTVLYPKLNWVSIKKLPGTLNTECVIPVAVMALSYITAITVDIKTLIVCIVCQVIGAY IGPYFVVKLPEKVIKQFISIGLIIAAVLIVAGQLNMIPSNGTATGLTGGKLILAGFLLFI YGALNNIGIGSYALTMVTVYLLGLNPVAAFPIMMGACTFSVPIGSAQFVKFGDYSRKITL FTSTFGVLGVLAAVFLVKSLDTYMLKWLVVIVLLYSAISMMMAKKEED >gi|313656766|gb|GL545251.1| GENE 297 327992 - 328972 1072 326 aa, chain + ## HITS:1 COG:MA3252 KEGG:ns NR:ns ## COG: MA3252 COG2423 # Protein_GI_number: 20092068 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanosarcina acetivorans str.C2A # 1 326 3 323 326 184 32.0 2e-46 MLYLTKDDIQKCFSMRDAIEADKKALELYSKGKTSIPLRTNINIPEKNGQNLYMPGFVGG ESAAAGIKIVSVYPDNITKGLPSVPATMIVLNPETGVVSAMLDGTYLTQLRTGAISGAAT ELMSNKDSSIMALIGTGGQGAAQLEAVLTVRPIKEVRIFDIDFERASKFAEDMKDHFPQV KMIPCKSAEETVTGADVITTVTTSKRSTFDANWVKNGAHINAVGAYTPEMCELPSAILPK AKTIIFDTLDGVWSESGDFLQPLEKGLIDKSIVNGDLGQLVSGEISGRITKEEISIFETV GTAALDVYVAGQIVDKAKSSSVGKEI >gi|313656766|gb|GL545251.1| GENE 298 329019 - 330146 775 375 aa, chain - ## HITS:1 COG:CAC1426 KEGG:ns NR:ns ## COG: CAC1426 COG2508 # Protein_GI_number: 15894705 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Clostridium acetobutylicum # 188 364 209 386 397 63 27.0 6e-10 MCILDFSNDWAWNEYFEKFSAKNIVSIEPLGHDLSGKTVTGFVFKSKFLEQLDFSLYFLP IFEDGKLESYFVFRSKHFSEGIPPELFSKCQNIKSIFYLKHSLIKKIETNNIFLQNSVFE ELIKLSSPSQTVLEKSSLTLGQRINTNYLAVVISSNFKVTDYSQPEREFIKFYYEINKFK EVFFNPLVFIKDYHWIVLFSTNKNIDKNVEQIANILKDKLHIFEFYIGISSYHKYWNLNT AWQEALAAIQFAKSSNSSKNIQAYQQIGIFKLFTNNKGDINYLFLNHMYKHFIFPLVTYD KKHDTHLVQTLSIFFSNKFSYTQTSKQLFIHINTLRARLKKIEELINVDFKNTDNLMNLY IAIRAYQSEKLINKD >gi|313656766|gb|GL545251.1| GENE 299 330155 - 330664 179 169 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313472034|ref|ZP_07812526.1| ## NR: gi|313472034|ref|ZP_07812526.1| hypothetical protein LBJG_01608 [Lactobacillus jensenii 1153] hypothetical protein LBJG_01608 [Lactobacillus jensenii 1153] # 1 169 1 169 169 279 100.0 5e-74 MENKIRLKDLVTSNVFNNYCLATPKLSLDKEIESVTIMDVKGIEKWVHKDELLIIGDFAR TEIDIEFIESLHQKDIAGIITKKKYKKYITSDNIDLFTFYKIPIILIDDFHPWSDVIISL KEITITHRTQLLKENEKFYQELISYVSTHSTETSLCNLVYKKFNFHLQL >gi|313656766|gb|GL545251.1| GENE 300 330793 - 331380 745 195 aa, chain + ## HITS:1 COG:PAB1502 KEGG:ns NR:ns ## COG: PAB1502 COG0078 # Protein_GI_number: 14521522 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Pyrococcus abyssi # 5 195 5 195 317 173 46.0 2e-43 MRNRFKGKDFLAFKDMDREEIEFITDLSLDFKKKWTIREPHEYLKGQVWAALFEKNSTRT RNAFERAAADLGVKVVYLRPDEMQMTRGEPLKDTARILDRYFDGLFIRTFGHEIVEECAK WMQNPVINGLTALEHPTQGIADLMTIKEKKGHYQGLKICYAGNIYNVAYTTMIFCATLGI DLSIACPEGIEPDEK >gi|313656766|gb|GL545251.1| GENE 301 331377 - 331730 387 117 aa, chain + ## HITS:1 COG:AF1255 KEGG:ns NR:ns ## COG: AF1255 COG0078 # Protein_GI_number: 11498854 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Archaeoglobus fulgidus # 4 112 189 296 307 108 51.0 3e-24 MIAEAKRRAKLSGAKIEITSDFDKALSGADIVYGMSQYSMGQSEEKITHLKEAFKPYQIT MEQLKKAKSDAIFMHCLPAHRGEEVTDEVMECDQSVIFDEGENRMHSIKAILAAVAD >gi|313656766|gb|GL545251.1| GENE 302 331756 - 333255 936 499 aa, chain + ## HITS:1 COG:SPy1543 KEGG:ns NR:ns ## COG: SPy1543 COG1288 # Protein_GI_number: 15675441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 2 480 4 479 497 322 37.0 1e-87 MKKKRKFKAPNTYVIIFYVLVLVAILTWIIPSGSYSYDKAGKVIANSYHSVATNRQGFWD IVMAPIIGMVGNEKVSGAITISLNVMLFGSFLEMMDATGAINIALKNVAKKYQKNYYVLI TVLTFLMGIFGTVQGAYEEGFVYLLMFLPIILSLGLDTIVALMIVIFGTQAGCAASIVNP FSTGIASGLAGISPGEGIIFRAITFIILMTLCSAMICLYAKSIKNNPEKSVQFFRKKEDL EEFAKSDAGKQKLDSKQRKIFIIFILTFLIMIVSLVPWTSLNKNWTFFVNATKWLNNNLI TGTILGHNLVPFGNWYFNKINGLLIVMTILSGLVMGYDIDKIIQIFIRGAASLVSTAFIV PLARGIQVLMTEGNITDTILNSTQKTLGTLPPIIFILVCFLVYILLATFIPSSTGLAAAT ISIMAPLGMFAGISAANMVVIYNFALGFVKLIAPTSIIVMTCTQAVHVTYGAWLKASWKY TLGYLAMLILLLVVSVFVI >gi|313656766|gb|GL545251.1| GENE 303 333270 - 334124 1074 284 aa, chain + ## HITS:1 COG:CAC0376 KEGG:ns NR:ns ## COG: CAC0376 COG1834 # Protein_GI_number: 15893667 # Func_class: E Amino acid transport and metabolism # Function: N-Dimethylarginine dimethylaminohydrolase # Organism: Clostridium acetobutylicum # 1 283 10 292 293 298 50.0 9e-81 MTEKVYVRNATNELKKVIVCSPKFYKFNGINEITKSWMEKGEKEHNELMVKEWQTLIDAY KENGVEVVEMEPQPELEVQTFARDFGAMIKEGAIIGKFRHPARQKETAVYEAKLKELGIP IVARCNAGCFEGGDFWMIDEHTLAFGLVDRTDQAGVDNLREQLQKFGYTVVGVPVAPEHL HLDMCFNIVAPKVCLATKSVLPFWFLRMLERRGFNIIDVPEELIAKHGCNVQALGKNKVL GIANNVSVNEKLEAAGVEVIKLPLEQILKAGGGPHCMTYPVQRS >gi|313656766|gb|GL545251.1| GENE 304 334142 - 335122 849 326 aa, chain + ## HITS:1 COG:CAC2945 KEGG:ns NR:ns ## COG: CAC2945 COG1052 # Protein_GI_number: 15896198 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Clostridium acetobutylicum # 37 314 34 316 324 149 34.0 9e-36 MKIVIADYPDSMMPTHELEKKILISGLGSDTNIVIFEYSDNKREEFFRVIRDADAILTAF TKIDSEVMDHAPKLKVISINATGYDNVDLEEANKRKIGVCPVGEYCTEDVAEFTITTSLA MVKNLKSYIYDIDKNKQWRYDYVNPNPRIADLTIGICGFGKIGTRVAQKAKALGMKVIAT DPFTNNKLEDVELVTKEELFANADIITNNMNLNETNHSYFNYDAFKLMEKKPYLINMGRG ACVVERDLLQALDEKLLKGAALDVLSDETPDLEKNQLVGRSNVLITPHVAFYSTSSLEDL QRISTENIVNYLTGQKQKVFKLVTDL >gi|313656766|gb|GL545251.1| GENE 305 335853 - 337184 1085 443 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855494|ref|ZP_04645800.1| ## NR: gi|238855494|ref|ZP_04645800.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 269-3] # 1 430 110 539 1499 753 99.0 0 MVLYKGDNQVQTTSADAEGGFTFNLTNAVSEKDNYSVQAEVDGSQSEKTVISPIVHSNTK PLANERNAYTPFDVSLANRGFKYDDAKHESYIELNLALGLLSEAYLDLNNAKMFYQIDPA LAPYIDKIVFSRALLSDGEATKDTSNEVPGATNVWTSGVLTTQNGPIRAALAGSTSSTYK IYLKADTPNSILSKPLSFTMWARYSSGHDMVSDFSKNLILNDNETTTFSSNNFFKSLDIV NNDGPILDNMSVDYSNKTVNTRYRVNGSLLGDKSNLTLRIRGNDNLLKLIDKVKISNKTY TLANNTLKYRTGELYINDIGGSLGFLSSLSNRQDFNVTFYLKNGKSFADALTSESQKFDF QFGIYDTTDYATAFHSLDTVTNSLSTKTYTTGDKYNNQTYDLSTFKTILDKLIKQKQDNP TTYLSFEDKKYLQLKTIHMKLLN >gi|313656766|gb|GL545251.1| GENE 306 337229 - 340450 3629 1073 aa, chain + ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 326 559 813 1022 1052 65 29.0 8e-10 MVNAADCKQLDNTAKWAWDNGARDDLLKYLDVATKVASYIHLEFPTKPTDFSGLLLRYTR AGTFISAVDSDRDGVLDITEIDNSYGMNPSVYDTDGDGISDGQELREGRDPGVAPFNWTD ANGNQLSIDVDTTTISGQLGNHNYHNEVMQPRTVNLYKVDDTGKKTLIAYTTSAVDQNGS FTLSKFTLNKGDKLVIGYVTPRTNKSLTDKDTILQQAFPTEQFSNEIIVKGKQVTVTFNM NGVSDDENQDIKVEKDSSFNKDSLTLPTPTMKTGYSFKEWNTQADGKGTVVTADTIFDTD TTVYAIGEKIKLPNPTNIKAETRTDDKTKSQETIITGKATPGATVTIKDNLGNEIGTGVA NDAGNFEIKTTSPLAEATKVSVEATKGGESSDAVEATVEQNNFQKGNPLIQPASPTAVTA VTIKASDGTNNSTTVTGKAAAGETVTVKDSSGNEIGTGVVGEDGTFTITTNKPIAENERI QVVVTKDDAESEPTEAVVTAKTEPTNPTEVTAKTLPDGNSDSTIVAGKGKAGEVVTVKND AGKVIGTGKVSDDGTFSIKTDEVIEPGKQVSVITTNDGMDSIPVPVTVSGETITSIKQSA KAAVDNLTYLNNAQKQSAKDAIDSANTVDEITTAKNNAVSTDTNMKDLSEDTKLAADKTQ DPYLNADLDKKQAYDKAVEEAQKLLNKETGTSVGADKDPAEVARIKQAVDDAYDALNGNS SLDDAKQKAKDAVDKNYTNLNDKQKETAKKRIDSAKSEDEVNNADKINSGLNEKMGELKE VSNLSDKIETTSNYSNADSDKKQAYKETADKIHETVAPSGDDLTTDDVNNLITDEATKRA ALNGDAREKARQELENNYNSGKSLQDGSTLDPKYYNASEEKKQAFQKALDNAKKALDNSE TTEAEYKSANDELQKAKADLDGQTTDKSKLDDAIKDANNAKGTDKYKNASDDTKSKFDEA LKKAEEVKNNSNATQKEVDDATNNLKQAQNNLNGQTTDKSKLDDAIKDANNAKGTDKYKN ASDDTKSKFDDALKKAEEVKNNSNATQKEVDDATNNLKQAQNDLDGQLLTRAS >gi|313656766|gb|GL545251.1| GENE 307 340540 - 341898 1211 452 aa, chain + ## HITS:1 COG:no KEGG:Apre_1411 NR:ns ## KEGG: Apre_1411 # Name: not_defined # Def: sugar-binding domain-containing protein # Organism: A.prevotii # Pathway: not_defined # 3 404 1510 1923 2126 149 35.0 2e-34 MKKAENVKNDSNATQKEVDDATNNLKQAQNDLDGQTTDKSKLDEAITDANNTKSTDKYNN ASDDTKSKFDEALKKAEEVKNNSNATQKEVDDATNNLKQAQNNLDGQTTDKSKLDEAITD ANNTKSTDKYKNASDDTKSKFDDALKKAEEVKNNSNATQKEVDDATNNLKQAQNDLDGQT TNKDTLNDAIKDANDAKGTDKYKNASDDTKSKLDETLKKAEEVKNNSNATQKEVDDATNN LKQAQNDLDGQTTDKSKLDEAIKSADDTKSTDKYNNASDDTKSKFDEALKKAEEVKNNSN ATQKEVDDATKNLKQAQNDLDGQTTNKDAINDAIKDANNAKGTDKYNNASDDTKSKFDDA LKKAEDVKNDSNANQKEVDDATKNLKNTLNNLKGQPAKKANLIASKDNAKIHKQTLLPQT GTETNPLTAIGIGLMALGAGIFAKKKRKDDEA >gi|313656766|gb|GL545251.1| GENE 308 342099 - 342947 697 282 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 7 281 11 293 293 179 37.0 1e-43 MSYDDKFYGFTNDEIFGSIMQNKRFCKAIIQAVLPDVNVVSVESIDTQKELGTKSDKQSK SVRLDIAVKDQAGNLYDVEMQVNNNHDIGPRMRYYQSSMDRDTLDRGEPYTSLTRTYLIF LCAFDPFGRGKLRYSFHLYDDEDKSIQLKNNAENIIINSKGSGSSGADLLNLQKLMNDDK IETIGVFKEIQTQIQEYNDDPKRRNLMRTAELRMKEETAVAEKRGVEKGREEEQRKAIKN TYKLFKSLSPNSTVDEVLQWIKANTDVSLSDEEIKAILSKSN >gi|313656766|gb|GL545251.1| GENE 309 343316 - 343753 322 145 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1823 NR:ns ## KEGG: LDBND_1823 # Name: not_defined # Def: transcriptional regulator # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 142 31 172 174 150 55.0 2e-35 MKIADIRRQTFYDNFLDKYDLLYYVVSTNLKENIDDNIDYLNWEEIIMLLFYDIELHAKF YRSVLKSQTEVDIVSMIALHLTTLLFHILEEKGLSNNQKAKDFVETYCLGMTYTMTANLY HEPEIEYDELAKKVVNAIEFTFKNY >gi|313656766|gb|GL545251.1| GENE 310 343858 - 344634 896 258 aa, chain + ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 15 254 1 238 316 312 64.0 4e-85 MKKIINDPSNVVPEMVSGLVRSYPQILKQIPGTEAVIRADKETMAGKVGIISGGGSGHEP THAGFVGKGMLSAAICGQVFTSPTPDQIYEAIKAADQGKGVFMVVKNYSGDVMNFDMAKD LAEMDDIKVKSIVVDDDIAVEDSLYTQGKRGVAGTIFMHKILGAAAQNGASLDEIEELAK KVLPHINTIAVALSAATVPEVGKPGFELADDEIEYGVGIHSEPGYRREKIKPSKDLCNEL LTKLDESLHLDSNKNIPC >gi|313656766|gb|GL545251.1| GENE 311 344643 - 344852 234 69 aa, chain + ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 1 69 247 315 316 94 62.0 3e-20 MGATPLMEQYIFSNDVLNWLEQKNIKPAFMKVGNYMTSIDMAGISVTLFELADDKWLDYL NMPVETVAW >gi|313656766|gb|GL545251.1| GENE 312 344866 - 345447 882 193 aa, chain + ## HITS:1 COG:lin2844 KEGG:ns NR:ns ## COG: lin2844 COG2376 # Protein_GI_number: 16801904 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Listeria innocua # 10 192 10 196 198 191 56.0 5e-49 MQLTLDVYEKWLRLFAKKVESNKLYLSELDAAIGDGDHGNNMARGVSAVEEGFNLKTPQD LTSALKLTAMAFISKVGGASGPLYGTAFLEMAKASSKTDDLSELLEAALAGIKKRGGATA GDKTMVDVWEKVLPTIKDGSISEDGIEEAVEATKDMQAKKGRASYLGERSIGHLDPGAVS SGYLFNSLLKAEE >gi|313656766|gb|GL545251.1| GENE 313 345447 - 345821 454 124 aa, chain + ## HITS:1 COG:L47257 KEGG:ns NR:ns ## COG: L47257 COG3412 # Protein_GI_number: 15672232 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 122 1 122 123 125 50.0 3e-29 MEYGILIVSHVPEIAQGLPKLLKQVAKDVSITYAGGTEDNEIGTSINKITEALDENKADK IWAFYDLGSARMNLEMAEEMSDKQITIHDTALIESAYVAASLLQVNTPIDAIEKQLADLK VKGD >gi|313656766|gb|GL545251.1| GENE 314 345823 - 346026 281 67 aa, chain + ## HITS:1 COG:TM1429 KEGG:ns NR:ns ## COG: TM1429 COG0580 # Protein_GI_number: 15644180 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Thermotoga maritima # 1 65 1 64 234 60 50.0 1e-09 MNGFLGEFMGTMILIILGTGCGASVNLKKNYGHASNWLFITIAWGMAVSFGVYVAASLGS QGHLNLR >gi|313656766|gb|GL545251.1| GENE 315 346095 - 346523 313 142 aa, chain + ## HITS:1 COG:lin1131 KEGG:ns NR:ns ## COG: lin1131 COG0580 # Protein_GI_number: 16800200 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 2 138 92 229 234 154 58.0 6e-38 MGAFVGAAVVALHFYPQFKATKADEGNCVGIFTTGPAIKNNLFNFLSEMIATFVFIFCLI NLGDFTQGLKPLIVGLLIMVVGQALGGTTGFALNPARDFAPRLAYSILPIPNKGAANWSY AWVPILGPICGGLLAVFLKTLI >gi|313656766|gb|GL545251.1| GENE 316 346953 - 348368 1403 471 aa, chain - ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 1 471 1 472 472 441 54.0 1e-123 MLDKFQWKKWILPLALGIIIWLLTPFKPAEINIPAWHLFAIFVATIAACITKPVPMMVST LIAITIATLTKIFTMKEVTAGFGNDTSWMIVMCMFLAAGFIKSGLGKRIAYLFVNLFGKK TLGLAYALSAVETVLAIGIPSNNARVNGIMYPIIDNLSKAMGSSPDDNTQSKIGSFLVFN EYEVNIVTSTMFLTGLAGNMIAIGLAKTQGVEITWMEWFLAAIVPGLISLVLVPFVLYKI YPPKVKETPNAKSWADGKLAEIGKMTLAEKIMAAVFVFAILLWLVGSKFGISATEVSFIA VAILLITGVINAKDLLSQGFAWNILTWLSIFMLMSQKLMKLGFFPWFSKTLGAILHGSNW ITVLVILYLAYFYVHYLFPSIATQISALYAGFLSVALAAGVPHLIAALMLGLCGSLYLST STYSAGPAALLSSTGYVANKDWWKLSAIIGVILNIIWLGGGLLWTKVLGMW >gi|313656766|gb|GL545251.1| GENE 317 348381 - 350189 2100 602 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 2 483 33 478 484 114 27.0 4e-25 MKVKEWDADYDVIVLGFGGAGATAARFAADNGAKVLLVDAAPFGHEGGNTRYSAQHVAMA YNFDKLAKYYHKLAAPFTIPEKTLDTYLHGMVNMPKYFEKYLDVKAFQWSRNVKSGDKLD KKDHMAEYPEYDGSKTFDFALVHNRDFDAALWKLLRKKVLDRKENIDIWLNSKAKDLIQD SEKRAIIGVAIERNHHLYYIHAKNGVVLATGGFENNNQLQQNFLHISHLTPFGTLYNKGA GVIMAAKVGAQLWHMSNYESLGVIPGYTFAEDEGHRGRQIGHWNLLYSGSIFAIANDGTR FMKEDAKFRHGHIYTHGDYVIPHAYDNAWLVMDEVQKEKVEAAEKEGKLRYPNFLKKLVS ANNVQELAEKLVVPANKLKMTIAKFNDFANSGNDIEFSRSPENMTAFKPGQLFAIKLAPA ILNTQGGPRRNENAEIVDWSNKPIPHLYGAGELGGICINRYQGGGNLAECLIFGKLAGQN AATPKSDTDEVIITKPLPRINDLVDGEKNQNIELGPNQYLGSTEAGIGGKIVVRVTYSDQ KIKNVEVLESHETEGIGARAIKELPKTIVENNSTDVDAVSGASTTTRALKEAVNQAIKKA DK >gi|313656766|gb|GL545251.1| GENE 318 350422 - 351303 534 293 aa, chain + ## HITS:1 COG:CAC1588 KEGG:ns NR:ns ## COG: CAC1588 COG0583 # Protein_GI_number: 15894866 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 258 1 258 293 103 22.0 3e-22 METKDYLYFIKLVECRSYIKTAQFFGITQPAISAMVKRLEKGIGTRLFIKRGSNSSLHIT NAGKVVYRAAKELVRIETAMKVDAKRASKNQFKLAYSELAGSLLLPAIITKLNQGNLLAN VETYQENSHLLEGHILEGKYDAIIFSRLTDEYIKGIKSVVLQKHEYQLIVPASSELAKKS EIDLFTIGTIPLIMRHKRFLSRTALDRIFAKINFHPQKRLIVDSIDATLELVRNNMGVAY LMNSTVKNIPGVVAVPLVPSQKQYVYQCLGIRENAIPNEFQKACLEIIQEIKS >gi|313656766|gb|GL545251.1| GENE 319 351300 - 352610 1332 436 aa, chain - ## HITS:1 COG:L137630 KEGG:ns NR:ns ## COG: L137630 COG1053 # Protein_GI_number: 15673106 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Lactococcus lactis # 24 318 222 499 502 79 27.0 1e-14 MITIWYESPALHLIQDAETNTTLGVQIKRKGQIRNIRAKNGVVLSCGGFENNQDMVQTYL GQGSLAPIGTLYNKGKGIDLAIEANARLWHMSNYDSHGLSLRNGDSREKFAYMINWKSLF NGSIFVAGDDGTRYFKEDEEDRHGYKYNHGNWIMIPNQNHPHIVMDQAQYEQLSNDTSAK SAQIKELISYAIKADSIEKLAKLIDAPLLPQAVKDFNFLISEKKRDMFLNRDLNTMRAFE DGPYYAIKVRHNILHTHGGAQRNEKCEVIDMNGNPIPHLYEAGELGDIFATKYLGANSIA DLLISGKIAGENAARTRKLDSAVDAITGASLIPELHSDAQITATNYETKENQAIGISSNG ISDFPIVVRVTGNKNKLEKIEVLQQKESPDVGGLAIPKLTKAILQDNTADVDSISGASAT SGALKEAVKEAWNKLD >gi|313656766|gb|GL545251.1| GENE 320 352613 - 353077 455 154 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0505 NR:ns ## KEGG: LGAS_0505 # Name: not_defined # Def: succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: L.gasseri # Pathway: not_defined # 1 150 1 150 597 201 72.0 9e-51 MIYTPSTRWDAQFDVIVVGFGGAGAGAARFAADNGAHVLLIDSAPEGHEGGNTRYSGGAF AWGLDSQKLADYYKQTYYPFKYDVRALDCFVKNITNMKEYAKKYFDIDSVATGRRPNGEY PEYQNANSMQSRSMNKGMYNGFFWKLLRKKFTNA >gi|313656766|gb|GL545251.1| GENE 321 353268 - 354158 683 296 aa, chain + ## HITS:1 COG:CAC1588 KEGG:ns NR:ns ## COG: CAC1588 COG0583 # Protein_GI_number: 15894866 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 288 1 286 293 107 24.0 3e-23 MNERDLIYFCKLVELESYTSAAKELDVTQPTISSAVRKLAQHYQDPLIIQKNKKSKITLT SAGQMLYDKSKKLLSEIASLDHDVRHANDRKIRISFSGVAGSIYMPEIIEKFYNAGISDM LDPKFERSTAAFSDLERGDSDIAIYSWIVPFNDPNYFIRTLDKTELVIITGLKHPWADKN EIKARELRNEKFIARKSTYLTRESLDRIGEFGDFTPNIIYIAQTMQLLIDLVERNMGIAL VMESSIKHNDLVHVIHLTAEQKLWAYMQIAMRKSFMPNKHQAKGIEILRNFHRKKH >gi|313656766|gb|GL545251.1| GENE 322 354325 - 356067 1882 580 aa, chain - ## HITS:1 COG:L123365 KEGG:ns NR:ns ## COG: L123365 COG1154 # Protein_GI_number: 15673655 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Lactococcus lactis # 8 574 3 575 580 546 49.0 1e-155 MNQHPDFLLNQIHGPQDVKQLDLAQMKQLASEIRTLILEKDAVLGGHLGPDLGIVEATIA YHYVFNAPKDKMVWDVSHQTYPHKMLTGRALAWLDPEHYEDVTPYSNPDESPYDYYAVGH TSTSIALATGMARARDLMGGKENIMALIGDGSMTGGLAYEGLNNAAIEKHNLVVVVNDNQ MSIDDNVGGLVTALKKLRDSNGQTPENPFTAMGFDYRYVADGNDIEDMIAAFEAVKDVDH PILLHINTLKGKGYEPAIKDEANHHWVLPFDLKTDKTTVPAPDGPTAASVALDEVIKRIK NDEKVLAINAAIPGSFGLDKIKQNYPENYVDVGIAEQESVAFAAGAVKEGAVPVLFESST FLQRAFDQLSHDVAANDLPVVMLVAGGGISSNSKTHLGIFDQVMVGNLPNWIYLAPTTLN EEKAMLNWAINQRKHPVAIKIPTKPVPMGEEVSADFDKIKYQVKPGKDVAILALGDFYTL GQEVAEKLNATLINPVSANILDKDSLDKLAKEHELIVTLEDNSLDGGFGQKVASYLGTNK VLNFGQRCEYTDQVPLKQIYQDNHLTSEQIIADIKVNLND >gi|313656766|gb|GL545251.1| GENE 323 356152 - 356799 728 215 aa, chain - ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 212 1 211 214 248 58.0 6e-66 MKILVTGFDPFDNDKINPAIEAVKLLPDSIAGAEIIKLEIPTKFNVSAEVVKTAIEKYQP DYVLNIGQAGGRFAITPERIAINLDDGRIADNAGYQPLNATIHEDGATAYFTQLPIKAMT RAIRAAGLPAAVSNTAGTYVCNHIFYQVQYMREKFFPNIKAGFIHIPFLPNQVVARPETP ALSLEDDVKGLTAAIRAIVERDSKGDIETVEGTIQ >gi|313656766|gb|GL545251.1| GENE 324 357114 - 358925 2356 603 aa, chain + ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 603 1 602 602 669 57.0 0 MCGIVGVVGKAARNIILNGLTNLEYRGYDSAGIYLNDLKGHEYLTKAVGRISSLKEKLTP DEDGLVGIGHTRWATHGKPTIDNAHPHFDETKRFYLVHNGVIENYTELKDKYLQGVKFHS DTDTEVIVQLISKIARDKNLDAFTAFKETLKLVRGSYAFLLVDDQEPDHVFIAKNKSPMM LGLGDGFNIIASDAISVLDQTKTFVSLEDGDVGDITKDSYTIETIEGERVEREPKVLDID PNAASKGTYEHYMLKEIDEQPGVMRHISQTYLDDAGNTKVNPEIVNAISKADRLYIFAAG TSYHAGLVGKALFEHYTGIPTEVGYASEAGYHFPMMSKNPFFIFLTQSGETADSRVVLKE TNKRGIPSLTMTNVEGSTLSREATYTMLLGAGPEIAVASTKAYTAQVAVQAVLAKALGEK LGVKAAQEWNLHHDLAIAAEGIQQLVDGKEKLKEIADKYLIKSRNAFYIGRGIDHAVALE AALKLKEVSYIQTEGFAAAELKHGTISLIENGTPVIALINDPVTAELTRGNIQEVVSRGA NIVTIVSKKFANSTDDIVLPEINYYMSALLTVIPAQLLAYYASRDKGLDVDKPRNLAKSV TVE >gi|313656766|gb|GL545251.1| GENE 325 359154 - 359348 306 64 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526303|ref|ZP_03956352.1| 50S ribosomal protein L33 [Lactobacillus jensenii JV-V16] # 1 64 1 64 64 122 93 5e-26 MLLCLQESSRKEKMMRNNIILECRQTSERIYITSKNKRNTPERLRLMKYSPKLQKRAEFV EISK >gi|313656766|gb|GL545251.1| GENE 326 359364 - 360332 952 322 aa, chain + ## HITS:1 COG:no KEGG:EF0573 NR:ns ## KEGG: EF0573 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 214 1 215 536 169 46.0 1e-40 MKSKLLLVSLMVSGAILVGTNQNSIVKADDLSSTTEVNSGVSFTGIFRYTNGLPIESSSY VQLKNQANNETISKTVNASGAVTFNATDGLKTGTSYEVIVNNQKLNYTLQLSSSNSNISK TFTVNLPGAELPLTYTVNARYTNGLPLSEGTEIKLRNLTDGSTEVLTKKVNNQGIVTFTE ADGLKKGVNYSVEVPGLTTGYSIRYDLGGNKSKDFILETTESKDSKQKSASSSSSNLLSS STNSTSLSNSNKANSTSSEDLKKQTLNVAGTSSHKATSAMNLPTKKQVQNLPQTGTKSVL LLTALGLLSLLASKLLFKRRIN >gi|313656766|gb|GL545251.1| GENE 327 360447 - 361592 1362 381 aa, chain + ## HITS:1 COG:CAC2834 KEGG:ns NR:ns ## COG: CAC2834 COG1929 # Protein_GI_number: 15896089 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Clostridium acetobutylicum # 3 376 6 376 380 312 48.0 8e-85 MKILIAPDSFKNCMTAQQVANVMKKGLSRVFPAAEYTLVPMADGGEGTVDALVSATGGCY FQVQVHNPLNQVVIAKYGFLGDKETAVIEMAAASGIQYVNKETMNPMKATTYGTGEMIVD AVNHGAKQIILGIGGSATVDGGSGMAQALGVGLLDKNGQAIKLGGEGLEQLAHVNLSQVP EQIKKTKIYIASDVTNPLTGPQGSTAVFGPQKGATEAMIPILDQNLHHLAQVVKKDLELD YEAVPGSGAAGGLGFGLLAFTNSKMEKGIDLVTHFARLAEKAKGADLVITGEGSTDFQTK FGKTPYGVALTTKKVAPQAPVIVLSGNIGPGVKSLYENKVIDAIFSTPSGAKSLEQAIKD APKDIALAAEEVGRLIRSVIK >gi|313656766|gb|GL545251.1| GENE 328 361740 - 362102 574 120 aa, chain + ## HITS:1 COG:FN1138 KEGG:ns NR:ns ## COG: FN1138 COG3576 # Protein_GI_number: 19704473 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase # Organism: Fusobacterium nucleatum # 17 118 24 129 143 62 33.0 2e-10 MKKLESTKLTAEQQRFFNVKLAFVSSVSKDGMPQVGPKESLRVVDDSHLAWVEVTHAHLW DNIKNGSKVAVVVGDVLSHTNVRVIGTAHVSEDQALIEDLRTKTGKNGDVIVVDIEEIDA >gi|313656766|gb|GL545251.1| GENE 329 362451 - 362690 352 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855184|ref|ZP_04645505.1| ## NR: gi|238855184|ref|ZP_04645505.1| conserved domain protein [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved domain protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 79 1 79 79 118 100.0 2e-25 MSKVLKLVFINSEDKNTTLSVPNAKDGLDEATVRQAMKTITDAHAFNKDGVDVYKSARMA KYVETTTTTVFDDSKSHQN >gi|313656766|gb|GL545251.1| GENE 330 362718 - 362927 290 69 aa, chain - ## HITS:1 COG:no KEGG:lhv_0182 NR:ns ## KEGG: lhv_0182 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 66 1 66 71 69 56.0 3e-11 MNFELLEQSVQYTFASESYTNGKLTRTMKNVAKDASANTLAQVGQALSSLQGDTLSDAIL IQKQNIKLV >gi|313656766|gb|GL545251.1| GENE 331 363133 - 366354 3652 1073 aa, chain + ## HITS:1 COG:lin0521 KEGG:ns NR:ns ## COG: lin0521 COG0610 # Protein_GI_number: 16799596 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Listeria innocua # 38 923 9 880 995 395 31.0 1e-109 MIYDKEDVFENSLIEYLSTGKVPQYEINEPGQNYVIDSLRKQGRKQIWQYLSDVKTTPAL WQNFKKIWEQHNQDKLDGPLSENEFAQVKKEISALKTPYQAGQFLYGVNGISQIEIDLDD GRHVFLKVFDQKQVGAGDTVYQVVNQIQRPAVIHGKQERRFDTTLLINGLPIIQIEEKKD GISANEALNQMHQYIEEGQYSDIFSTVQILVAMSPHECLYMANTTADKFNKDFAFHWQRK KDNTQVNNWLEFADTVLSIPMAHQMATSYMILDGTPNNQMLKVMRPYQVYATQAVIEKLK HWDFEYGENRVGYVWHTTGSGKTITSFKTAWLASRLPNVDKVVFLVDRIALTRQTMEKYH AYDPEASEDDWGNVLDTRNTTDLKNKLRKRGSDIIVTSVQKLETLVKRDSFKDPDKNIVF IVDEAHRSTGGDAFSLLKKAFKKGAWVGYTGTPMFDDTTANGVRTKDVFGEPLHIYTIRE AISDGNVLRFKVDFQTTIDEDKMKSDYLPEFYHQRYPKWTEADIKHKIENLQPDDIDDAI GPTFYDENKEHVKLVVEDIFKNWRNRSNDGQYNALLTTHVGGNRASTPMAMMYYDEFQRV NAEHQKNGGLVLKVAVTFSQSTGNDDNMVENNKNLSRAVDIYNAQFGTSFGMDDIAGYTA DVVSRLNKTAFDKNYLDLVIVVDQLLTGFDAPGLNTLYVDRILRNASLIQAYSRTNRIAD MQTKPFGRIVNYRWPVENEKLMNKALSIYANKSSAFGQEDLLDKEPEDNPVTVPSFNEQL DNVKKTVDRIKELTNQTLEEVPKSEEDQDELYKLLRKYNKEVEVLKQYDLGTDDEGNEIG YDYDHPEKLLQKMDISENDEKMITTVLPNLIKKELHDRNREMPDIDLRMTHIKEVVINYD YLTHLIEELINKVHEGDEEGIRKAQDKIREFTLSMDNRAYAKQIERTSRAIVNKQYPRDA ESQKWPYHVKDVHEVISQANEAGIDDIIYQFRIKWGITDVINTDELKSIFANHRLGKKDL NDSGKIDAIKKDAAEIYKKRATDEKVVKLSKIKYRNSLSDAIYELADELKREN >gi|313656766|gb|GL545251.1| GENE 332 366373 - 368025 2015 550 aa, chain + ## HITS:1 COG:SA1626 KEGG:ns NR:ns ## COG: SA1626 COG0286 # Protein_GI_number: 15927382 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Staphylococcus aureus N315 # 3 535 11 518 518 470 48.0 1e-132 MSEKDITTKLWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEDYLKKNDILDIEDGES INDAYVREASGDDLADYLEDIASSLGYAIEPHDTWASLIKRVQDKEVIPSDYQDLLDHFA KNTELANNKTASQDFRGVFNDVNLGDSRLGSNTNDRAKSISKIVQLVDTIEYKDENGKDI LGTIYEYLIGQFAASAGKKGGEFYTPFEVSKVLAKLVTANLKGEPEEFEVYDPTCGSGSL LLTVQGEVPGGKKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEFTNIHLSNADTLEADWPD GLDAQGIDRPKTNFDAVVANPPYSAHWDNNENKLKDPRFSAYGKLAPKTKADYAFVLHGL YHLSPEGTMAIVLPHGVLFRGAAEGVIRQNIIEKNYLDAVIGLPANLFYGVSIPTIVLVF KKNRQNKDIFFIDASREFEKGKNQNKLTEENIDKIISTYLKREDVDKYAHKAELDEIKEN DYNLNIPRYVDTFEPEPPVDLGKVADELEEVNQKIAENKKELLGMLKELTTDGDDLRAQL DKFISVFEKN >gi|313656766|gb|GL545251.1| GENE 333 368048 - 369085 577 345 aa, chain + ## HITS:1 COG:SA0392 KEGG:ns NR:ns ## COG: SA0392 COG0732 # Protein_GI_number: 15926110 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 22 233 5 217 403 179 45.0 7e-45 MTDDLMKSSGSGDAGNSTHADEQRLYPKVRFRGFDEPWKKVKLGRNVKRIRRKNKNLETN IPLTISAQFGLVDQRDFFGRVVASENLANYILLKRGEFAYNKSYSKEAPYGSIKRLEKYN EGALSTLYIAFTPENINSDFLKAFFDTTKWYSHIVQVSTEGARNHGLLNISPQDFFEMSI TIPKSDEQNNISRIYNLMNSLLSLQQRKLELEKQIFYALKTHIFAKDLFFNGQKDMIKYK LKDVSNMYQPETITATQMSTNGYKVFGANGYIGHYYNFNHKDDAITICARGASTGAVNFV PGPVWITGNSMVVDIDSKLINQLYFYYYLTTLNLKNILQVEHNLS >gi|313656766|gb|GL545251.1| GENE 334 369227 - 370405 1093 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 335 371118 - 372230 513 370 aa, chain + ## HITS:1 COG:lin0523 KEGG:ns NR:ns ## COG: lin0523 COG0732 # Protein_GI_number: 16799598 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Listeria innocua # 117 370 136 397 397 87 28.0 5e-17 MGEISEKITQKNNNSCSQFPVLTNSAEYGIVYQKDFFDKNIAINTDNYYVVHTEDFVYNP RISKQAPYGPIRVNHLKTGVMSPLYYIFKIKDDFNIGFFEFLFIGNKWHKFMYQNGDSGA RSDRYAIKDKVFNKLPIYIPQKIEEQKLIFEINHKINSLLYLQQRKLELISALEKGLGQI IKQQNNKYGITFSLNNFLEIPPQIQARIKNKNQLLTVKLNLQGLARGVQRDTLSLGSTKY FIRHTGELIFGKQNIFNGSIALITKEFDGLATSNDVPSLKISNINPQFLFYLLKNPDFWK HTELIATGTGSKRVHIHDLLKLHIKIIPDAKYQAKIVSLSRNFEKIVLNQQIIVKECEKT KQFLLQNLFI >gi|313656766|gb|GL545251.1| GENE 336 372669 - 373841 513 390 aa, chain + ## HITS:1 COG:jhp1422 KEGG:ns NR:ns ## COG: jhp1422 COG0732 # Protein_GI_number: 15612487 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Helicobacter pylori J99 # 109 388 331 614 624 142 36.0 2e-33 MYPKVRFRGFDEPWKNKKFLTFSSKITKNSTSDDIDFPRIEFENIVSGEGKLAQNRSKLN HIKSGIKFDKGDILFGKLRPYLKNWWLAEFPGVAVGDFWVIRAKDNRYFLYYLIQAPLFE KVSNYTTGTKMPRSDWNYVSNTFFKLPKIDEQEKIGRILDKVDSLLSLQHRKMELENQTS KAIYNYLFDKNKPFYFKDNKTKKVFLKELGTTYSGLSGKNKTDFGHGKAKYITYLNVNKN TIANHNLLDLIEIDKKQNEVLNGDILFTISSETPEEVGLASLWPYDDTNIYLNSFCFGFR PNSKINNLWLAYELRSLKIRKNMYKLAQGISRYNLSKKSVLNLQVDVPSDAEQNFDSKFV KLINIQTKFLSNERNELLLLKKFLLQNLFI >gi|313656766|gb|GL545251.1| GENE 337 374339 - 374752 102 137 aa, chain + ## HITS:1 COG:jhp1422 KEGG:ns NR:ns ## COG: jhp1422 COG0732 # Protein_GI_number: 15612487 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Helicobacter pylori J99 # 1 109 225 334 624 96 48.0 2e-20 MKNIGESFSGLSGKKSSDFGHGEAKYITYLNILNNPIIDTKLTDKIEIDNKQHLVKKGDI FFTISSETPQEVGLSSVLDTNLNECYLNSFSFGYRLKEISMFDNLFNSYNFRSPNFREKC TFLLKEFLDIIFLKKLF >gi|313656766|gb|GL545251.1| GENE 338 374695 - 375501 369 268 aa, chain + ## HITS:1 COG:MJ1531 KEGG:ns NR:ns ## COG: MJ1531 COG0732 # Protein_GI_number: 15669726 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Methanococcus jannaschii # 66 267 4 216 425 94 38.0 2e-19 MYILAQGISRYNISKKAVLNETICFPKISEQKQIGKLIKLMNSLLSLQQRKLELENKLKK QIAFYLYSFTLTPNFKHIEVKNKKLGDIVDISNGIMGDSQKKSGNFKLTRIETISNGKID LSRTGYIDQVSDEKKFLEVGDILYSNINSLTHIGKNAIVKEKHLPLVHGINLFRLHITNN QITPNYLHGLLNLPKYKWWVKSHANPAVNQASINKTELSSLVIKYPDLDIQNQINNINYS FAQYWDIQYSKKESLCQLKQFLLQNLFI >gi|313656766|gb|GL545251.1| GENE 339 375537 - 376091 414 184 aa, chain - ## HITS:1 COG:lin0524 KEGG:ns NR:ns ## COG: lin0524 COG0582 # Protein_GI_number: 16799599 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 2 184 126 308 309 250 65.0 1e-66 MLLKQLKLGTEPNWDWFILLVAKTGLRYAEALALTPNDFNYEKQVITVTKTWNYKYAGGG FRPTKNPTSKRNVMIDWQLAQQFKQITQGMDPDKPIFVSGRAFNSTINIILERLCYQAEI PVISIHGLRHTHASLLLYEGVSVASVAKRLGHANITTTQKTYLHIIQELENKDNDKVMHH LSQL >gi|313656766|gb|GL545251.1| GENE 340 376082 - 376459 304 125 aa, chain - ## HITS:1 COG:lin0524 KEGG:ns NR:ns ## COG: lin0524 COG0582 # Protein_GI_number: 16799599 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 2 113 3 114 309 141 54.0 3e-34 MSKKISTKLFYRYYGNWIELYKKGAIRQVMLDKYYLTERKLRELAPELRLSELNRQTYQK LLNDYAETHEKHTTLDFHHHLKAAIIDALDDGMIKTDPTRRVIIKGRKPKPKRKSISIYL NYRCF >gi|313656766|gb|GL545251.1| GENE 341 376503 - 377003 260 166 aa, chain - ## HITS:1 COG:MJ0130m KEGG:ns NR:ns ## COG: MJ0130m COG0732 # Protein_GI_number: 15669898 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Methanococcus jannaschii # 9 165 34 207 425 77 34.0 1e-14 MGEIATTYSGGTPKAGNKKYYNGLIPFIRSGEIHSNKTELFISEAGLKNSSAKMVTKGDL LYALYGATSQAFFNMTFDDDEKRDFIYIILEKANFDKEWIRLISTGTQNNLNAKKIRNFH IVFPTYKALKGLNKLFCNIDTDIDIQYKVIVTTNQLKQFLLQNLFI >gi|313656766|gb|GL545251.1| GENE 342 377991 - 378287 274 98 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0527 NR:ns ## KEGG: PEPE_0527 # Name: not_defined # Def: transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 4 95 2 93 94 63 34.0 3e-09 MDRTNLKNYLKDNYENDQDFAKDFVQCSLNVNTGIAIINLRKKMGLTREEFARYVNMPQA TILQIEQGDVDVTTDLLVKLATASKQHIEINFSPIFDE >gi|313656766|gb|GL545251.1| GENE 343 378626 - 379450 284 274 aa, chain + ## HITS:1 COG:no KEGG:LJ1019 NR:ns ## KEGG: LJ1019 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 9 269 12 278 283 133 32.0 9e-30 MATKRQANLPTATEFQVWDKEKIRKYIPNHQALKEYITIDSTYKIKPSMIVLFDFSSEPI IGKYKSVIFDTEAGIILTTKNSRQLFNSLSQSSTLGLKYQNKLRQQLGLKRKHVFSLGNY AYFSLNGFSQLNTSWLALHQLSDFIQLAETEAQASTIKLNSTQYLFKFTSCAPHIQKRLH ESITLNQELKETAINFQNELGLNQTLNDSLLTEEERLFKLQLATKPTLASLIKQVHNDDF EQYSFFMKSQTGTIWTKNDHQTCLSFTRRNNLMF >gi|313656766|gb|GL545251.1| GENE 344 379572 - 380078 550 168 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00174 NR:ns ## KEGG: LCRIS_00174 # Name: not_defined # Def: RNA polymerase sigma factor # Organism: L.crispatus # Pathway: not_defined # 14 167 10 163 163 90 38.0 2e-17 MKKENISPQSLLTAWENKNLVTRVLKKAHVYRSYSEYEDLFHEGLITYARLLDRFKEKSL TEINKLAYKKIFWKINDELRKEQRRAELFLPIENQDFELEEELSREDWLVLANELGQLTE IEMVIFREHFIEKCALKTLASNYNFSLRTLSRKKRELIIRMKAKLKRC >gi|313656766|gb|GL545251.1| GENE 345 380310 - 381188 821 292 aa, chain + ## HITS:1 COG:SP1187 KEGG:ns NR:ns ## COG: SP1187 COG3711 # Protein_GI_number: 15901052 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pneumoniae TIGR4 # 3 280 2 277 278 178 35.0 9e-45 MTFRLVQVLNNNVGLASKEDNSQVVIMGKGLTFQKKKGDTIKASAVQKVFKLHEENPSDL TSLLSTIPLDFLTVSYSLIDEAQEKYDYSVEPYIYTTLTTHLYESAKRLTNGKLIETYLP DLEKDYPLPYEIAGYVLDGFATRLNINFPKQEQKSVALHFLNARTDIHTQNQVQRKAVNK NKQILAIVENELNNHQIYRNRDNANDYERLLVHLKYFINRINQKPVPKVLSETIIKEIIK DYPQTFAIVQKINEQIKQKMGLEFTNDEQVYLTIHIQRLIREEEKDDKHNEK >gi|313656766|gb|GL545251.1| GENE 346 381166 - 381522 380 118 aa, chain + ## HITS:1 COG:SP0476 KEGG:ns NR:ns ## COG: SP0476 COG1447 # Protein_GI_number: 15900391 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 5 118 1 114 114 116 55.0 1e-26 MTNIMKNSEDVNTIGFSIVAYAGDARSDLVDSLKCAKDGKFEEAHRLVVEAEKSINLAHN IQTKMLTKEASGENLTLSFIMAHGQDTLMTTMLLKDQMDTILDLYERVFVLEKKLEVE >gi|313656766|gb|GL545251.1| GENE 347 381528 - 382937 1107 469 aa, chain + ## HITS:1 COG:SP0477 KEGG:ns NR:ns ## COG: SP0477 COG2723 # Protein_GI_number: 15900392 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 3 463 5 467 470 665 67.0 0 MAQVKKLPKGFLLGGATAAYQVEGATKEDGRGQNMWDVYLAKQGKYSPDPASDFYHHYPE DIALAKKFGLNAIRLSISWVRLFPKIDGPANEKAVAYYHDLFKTCLDNGITPFVALHHFD SPQEMLEEGDWLNRKNIDRFIKYAKFCFLIFPEIKNWFTINELISLASGQYLGGQFPPNH HFNVSEAIQAEHNMLVAHARAVIAYHDLHLPGRIGCIHALKTGYPNSSRLEDIQACQRYD AYNNRFLLDGTLLGEYQPETMDLLQEVLAANNASLTILPEDLAILKKAAPLNGMFGMNYY RSEFIREYHGESIDQFNSTGEKGTSAFKFKGVGEFVKRTEVPTTDWDWNIYPRGLFDMLM RIKRDYPNAPTIYLTENGMALKEQLNEDYTVDDSRRIDFIDQHLEQVLKARKAGVNIQGY FVWSLQDQFSWANGYNKRYGLFYVDFKTQKRYPKKSAYWFKQLAASIEE >gi|313656766|gb|GL545251.1| GENE 348 383025 - 384668 1599 547 aa, chain + ## HITS:1 COG:SP0478 KEGG:ns NR:ns ## COG: SP0478 COG1455 # Protein_GI_number: 15900393 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 1 543 25 555 559 607 56.0 1e-173 MAIKDGFISIMPLVMFSSLMILIVQLPTLFGIVIPANAKLIMVKIYNLTMGIMGLMVAGT TAKALTGNFNRTMPEGKVINSTSTMIAAMSAFLFLAVSPDPKTGSLDVGFLGTQGLLSAF VAAFLTVNIYRFCIKKNITIRLPKEAPGTIAQSFKDIFPFAFSVLSCVLIDLISRAAVGA PFASVFQKTLTPLLKGVETYPGMCLIYGLSALFWFVGIHGPSIVMPAVTAFQLANTEANL KLFEAGQHPLHAMTNNFGNYIAAIGGTGATFIVPLVLILFMKSKQLKTVGKASFIPVLFA VNEPLLFAAPLVLNPYMFVPFILTPISNVILGKFFIDVLGMNGMIYTLPWTVPGPIGVLL NTHFQLISIIFVIIMLVMDAAIYYPFLRVYDAELVKQEQSKVQKLAEEENFESTVKEELS EKEITENQEQEQKETNHPNLTKELKVLVLCAGSGTSAQLARALNEGAKEEKMPIIANSGA YGAHYEIMANYDVVILAPQVRSFYSDMKADTDKLGIKLLATKGAEYIEMTRNPKQAVKFL LSQLNLS >gi|313656766|gb|GL545251.1| GENE 349 384791 - 385984 1211 397 aa, chain + ## HITS:1 COG:SP0474 KEGG:ns NR:ns ## COG: SP0474 COG1455 # Protein_GI_number: 15900389 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 1 389 33 433 440 385 54.0 1e-107 MLAMPLVLIGSLFQVIASFPLESFTKWLHQTGLDLIFNNLISNSFGLIALLTCFGVAYRL ATSYKVDGLSAGALAVASMLLATPSITDKAGVAGIPYPGIGGRGLFTAIIVGLVTAEIFR WFIQKDITIKMPDSVPEVVGKSFMALVPGAVILTFFEAITWGISLTPIGNLNNLLGIVIG TPLGLIGGTLIGTFIAILLNSLFWFCGVNGGQVVNTVMQPVWLQAATANLAAWQAGKALP NIITLPFIDLFVYIGGGGATIGLALCLMFLSKSKEYKVLGKAAGIPAFFNINTAILFSFP TVLNPIMLIPFLLAPVTNAVITYFAMALHLVPLTTGAIMPWTMPPIIGGFFACGGSWAAA ILQLVLVIVSFFIYYPFFKAADAARLKAEMEKSDNRR >gi|313656766|gb|GL545251.1| GENE 350 385999 - 387885 1916 628 aa, chain + ## HITS:1 COG:no KEGG:SSUST3_0216 NR:ns ## KEGG: SSUST3_0216 # Name: not_defined # Def: hypothetical protein # Organism: S.suis_ST3 # Pathway: not_defined # 1 625 1 627 628 707 55.0 0 MTILIKNTASNPTVDYAASELAYYLEKMTKAEVGFSTDEADIVLKLVADDEENDHAQYQL QDNQVIIAGNRPVAVLIASYQYLHALGARFLRPGRENELIPNIEVEEIKQIKAYDHVASY KHRGVCIEGANSLENILEFIEWLPKNGFNSFFIQFANPYTFLKRWYSHEFNHYLEGRDLS DAEIQTMSDEIDEAMALRDLRHHRVGHGWTGEVLGYSSEFGWESGVELAEDKRDLVAKVN GKRDLIQGTPIFTNLDMSNHKVNEEMAKVIVDYAAKHKEVDYLHVWLSDGDNNVCECDEC QKILPADQYVNFLNYLDEKLTEAGLDTKICFLLYHELLFAPEESKIKNPERFVLMFAPIS RTFEKSYADVDYEHGIPEPTPYVRNKTTLPNSLEENLAFLFDWQKNFKGDSFVYDYPLGR AHYGDLGYMEISQIISRDIRYLDKLHLNGYISCQELRTGFPTTLPNYVMGRTLWDKSLTY EELEKEYFTAAFGKEGMTVAAYLEKLSNLSSSDYFNKIDSRINAQLAAQYQGCVSEAVAI LLVVIKGLKDSQASQHENWRVLAYHRQAVIKLATALGLQASGKQAKAEEAWIDFQDFIKL HEANFEPYLDVYRIIEVATNYAGFKYRE >gi|313656766|gb|GL545251.1| GENE 351 388156 - 388689 332 177 aa, chain + ## HITS:1 COG:no KEGG:TEQUI_0165 NR:ns ## KEGG: TEQUI_0165 # Name: not_defined # Def: AbiQ-like protein # Organism: T.equigenitalis # Pathway: not_defined # 6 164 1 161 167 66 35.0 4e-10 MKKEKLYLYNISSKYVAELHKLDKHVFYHHGLHDRPYVGILIKLDNFNYFAPLGSPKKKH KKINENITFSKINYRNQFLGVINFNNMIPAPKSMFQKINIQKIEDSKYSNLLSSQLRAIQ KHSNKYKHKANILRMKVKKHELESKQLEICNDFETLERHIYIVEEKLLKFTTVNKNN >gi|313656766|gb|GL545251.1| GENE 352 388925 - 389161 254 78 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0912 NR:ns ## KEGG: LDBND_0912 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 3 77 40 113 118 63 38.0 2e-09 MWPAVIIGSIFLVIAIYTFLCSYIKEEKNSLLLKLPYKKKVVLTQKPQKVASWHAFHIYH VELSKYEAVNYMIIQKKG >gi|313656766|gb|GL545251.1| GENE 353 389169 - 390845 2011 558 aa, chain + ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 558 1 556 556 590 54.0 1e-168 MKSDIEIAQASQTLPITEIAKKLGLNEQDLELFGSDKAKINWSAIKNAKANHHLGKLVLV TSISPTPAGEGKSTMTIGLADALNNQLHEKTLIALREPSMGPVFGLKGGATGGGQAQVIP MEDINLHFTGDMHALTSAIDTLAALVDNYIYQDNSLKLDSNRILLKRGLDVNDRTLRKIT LGQGSRFNGVEHEASFAITVANELMAILCLATSIIDLKQRIGNMLVGYSTEDKPVFVKDL HFEGAIAALLGKALKPNLVQTIEHTPALVHGGPFANIAHGANSVMATNLALHLSDYVVTE AGFGSDLGGQKFMDFVSTHLEKAPDAIVVVATVRALKYQAEQSTDNLSNENLDALREGFK NLERHMNNMRQYNRPVIVLINKFDSDTDAELALLQDLIAEHGIDSEVVTYHNDGSKGGIK AAEKVRALVNQEQGEIMRSYAKDDTIQVKIEQIAQKIYHAGKVEYSEKALDQIEHLKELG KDKLPVIIAKTQYSFSDDKKVLGAPTNFTLHVKNLALKNGAGFIVVSTGSILDMPGLPKH PAALDIDIDDDGKISGLF >gi|313656766|gb|GL545251.1| GENE 354 390845 - 391303 341 152 aa, chain + ## HITS:1 COG:L0335 KEGG:ns NR:ns ## COG: L0335 COG0597 # Protein_GI_number: 15672979 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Lactococcus lactis # 2 152 3 150 150 100 41.0 9e-22 MQLLYLFIAFLVVLCDQGLKYYISHSYMLGQEHTLIAGLLSFTYVKNSGAAWNILTGQML IFYIISIIAIIACLYFLYNKKYNNPIFKSGIGLVLGGVIGNFIDRLHLKYVIDMIQLDFI NFNIFNIADSAITVGIILIFIYLIFFSDKDEK >gi|313656766|gb|GL545251.1| GENE 355 391303 - 392208 838 301 aa, chain + ## HITS:1 COG:L25787 KEGG:ns NR:ns ## COG: L25787 COG0564 # Protein_GI_number: 15672980 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Lactococcus lactis # 1 297 1 298 301 332 59.0 4e-91 MTDFELNVSAKAGRLDKYISEHSDLSRSRVQELLTSGDILVNSKQEKPSYKVAIGDKISV HVPKLVPLNVEPEDIPLDIVYEDNDVIVVNKPQGMVVHPSAGHPNHTLVNALMNHTKELA ASPEGFRPGIVHRIDKDTSGLLMIAKNTQARESLESQLAHKTNKRVYLAIVHGNFKEASG TIDAPIARNPKERKKMAVVESGKAAVTHFKVLEQYPNYALVSCQLETGRTHQIRVHMKYI GHPLAGDPLYGPKKTLKGHGQFLHAKILGFKQPKTGQWLEFQVEPPEIFQKKLTYLRGLK G >gi|313656766|gb|GL545251.1| GENE 356 392216 - 393274 921 352 aa, chain + ## HITS:1 COG:L43866 KEGG:ns NR:ns ## COG: L43866 COG0505 # Protein_GI_number: 15673583 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Lactococcus lactis # 2 351 3 353 357 252 39.0 9e-67 MKRYLILEDGTSFAGESFGAETISTGELAVQTSNFGYQEALTDPTNAGKILVFTTPVIGT TGINSIDYEAIDPNVRGIICNEIATHISDSPNFQELDYFLKEKKIPAIYGVDTRALAHKI SNQSKIKASIMDTNDEHAFDQIRALVLPKNKTATISTSNSYAAPNIGKTIAVVDLGLKHS MLRELSLRKANIIVVPFNSKPQDILNLKPDGLVISNGPGTAAEVKKGLAPLFDEFYGKLP ILGIGLGFLAICDYLDIELIDLPKPFNGVNYPVILQNSNTIWQTAMNIPQLALSENGGIN FTETYYDLHSDLLAGFYLKDKEVLATAFNPEGAPGSFDGLRIFDQFMQLMEK >gi|313656766|gb|GL545251.1| GENE 357 393276 - 394109 895 277 aa, chain + ## HITS:1 COG:CAC2644 KEGG:ns NR:ns ## COG: CAC2644 COG0458 # Protein_GI_number: 15895902 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Clostridium acetobutylicum # 1 276 1 270 1065 121 28.0 2e-27 MPLENDLNKVLVLGSGPNIVGSVAEMDAYTNSAIKAFLEDDIHVVLVNPNPATVSSDRQK GVTVYLEPMTLAFMKRILRMEEPDAIVTAYGSTNALAVAKELLDDGIIDDMKIKLLTTNN ELLNLVDHKKQIAFMQKNNFATCESWHLVKTDTNESITDLLSHARFPLLVTKYHQYIHNE HFKFQNVADLSEFFKAEAETEADHFNLNNYRLTEDLSNWEEVIVDVLRDNRGNFNFINIS SCLEDVAINSGDSLIISPALTLNNDHVRKIRKLSKKS >gi|313656766|gb|GL545251.1| GENE 358 394106 - 396448 1713 780 aa, chain + ## HITS:1 COG:BH2536 KEGG:ns NR:ns ## COG: BH2536 COG0458 # Protein_GI_number: 15615099 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Bacillus halodurans # 4 780 275 1058 1062 401 30.0 1e-111 MNRLNIHGFLSIHFAVSHHDTEIELKVLSLKNRLTRTSVVARRVAMYDIGYVLAKIALGY NFNEIMQPLTGQNAAIEPVLDAVSIKFPYFSFSESGLNHYELGDIMQSSGESIGIGRNFE AAFLKGLESNFDINGLRDFYYLEKKQDRQQLLQRLANPDELHIITLLAAISSGLTYTQIH EVCRLHPLYFEKLTRIVEIAKQLKSNLSKDSLEIAKKFGFSNSFISIITQKSLEDIDDLC REYNFNSSYLLLDGSAGLYQANCSVCYSSFSSENEVNPLNSQRKVLIIGMKPMQVSLTSE YDYMIYHALKTLKDEGIATVLISNNSEAVSTAYELVDRVYFEPITYENIVKIARREGIDE VLTQFSGKEVNQLRPNLIKAGLKLLGQENLISELTKQKINVEGLPIELVPNKEIFTEGQA KQFAEKYGFPVLIGGQNRELKVKSAVVYDIPALEKYINENDLDEGTISRFIEGRKYEVIA ISDSQNVTIPGIIEHLEQTGSHASDSIAVFQPQNLNKEQRAFLGKMTKEILPLIKMKGLF TLHFLQADGQFYLLQVKTYAGHNLAFLSKSLNSDLVGITTKCLLGKSLKELNLPENIWPA SDLIHVKMPVFSYIDYQSGNTFDSKMKSSASVMGRDTLLSKALYKGYEGSNLTIPSYGTI FISVRDEDKQRTINLAQRFHRLGFKLVATEGTATILAEAGITTGIVKKVQEDQHNLLEKI ASHKIVMVINVINLSDNASQDAIRIRDVALNTHIPVFSSLQTAELILEVLESLALTTQPI >gi|313656766|gb|GL545251.1| GENE 359 396551 - 396724 207 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854434|ref|ZP_04644774.1| ## NR: gi|238854434|ref|ZP_04644774.1| hypothetical protein LACJE0001_0382 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_1620 [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_0382 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_1620 [Lactobacillus jensenii 208-1] # 1 57 1 57 57 85 100.0 1e-15 MSNKVSNTSLNKQDILENAIPLVAKKKHRLLKSVGITIVSLSGLVGLGILGRKRLLF >gi|313656766|gb|GL545251.1| GENE 360 396996 - 397175 161 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854433|ref|ZP_04644773.1| ## NR: gi|238854433|ref|ZP_04644773.1| hypothetical protein LACJE0001_0381 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_1619 [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_0381 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_1619 [Lactobacillus jensenii 208-1] # 1 58 1 58 182 101 98.0 2e-20 MFTLYFMAIDLLEDNSTEWVYKITTDYQEGQITINKQTFDRKLTSFEKTSKCVQIKKKL >gi|313656766|gb|GL545251.1| GENE 361 397267 - 397542 252 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851106|ref|ZP_05556495.1| ## NR: gi|256851106|ref|ZP_05556495.1| predicted protein [Lactobacillus jensenii 27-2-CHN] predicted protein [Lactobacillus jensenii 115-3-CHN] hypothetical protein HMPREF0886_2979 [Lactobacillus jensenii 208-1] hypothetical protein HMPREF0526_10998 [Lactobacillus jensenii JV-V16] predicted protein [Lactobacillus jensenii 27-2-CHN] predicted protein [Lactobacillus jensenii 115-3-CHN] hypothetical protein HMPREF0886_2979 [Lactobacillus jensenii 208-1] hypothetical protein HMPREF0526_10998 [Lactobacillus jensenii JV-V16] # 1 91 92 182 182 166 98.0 6e-40 MPYVNFMSVKLLEDTDREWIYEIYTDCEEGMVIIDKETKIGDITSFELTSKQLNVKRETV EFWIYYCILDLMKTDPGIDEFYWINVKLDKD >gi|313656766|gb|GL545251.1| GENE 362 398453 - 398698 277 81 aa, chain + ## HITS:1 COG:no KEGG:LGG_02056 NR:ns ## KEGG: LGG_02056 # Name: not_defined # Def: phage-related infection protein # Organism: L.rhamnosus # Pathway: not_defined # 5 68 8 71 101 63 46.0 3e-09 MDVAEALARLKFLVRHNKFKMVRRTDKMAMPVSVPLAKELIRQLSIDDFVKHEPNRNNPL QFVWIFKTADEQKYETVKFFV >gi|313656766|gb|GL545251.1| GENE 363 398737 - 399915 1093 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 364 400136 - 401059 929 307 aa, chain + ## HITS:1 COG:L197116 KEGG:ns NR:ns ## COG: L197116 COG3600 # Protein_GI_number: 15673914 # Func_class: S Function unknown # Function: Uncharacterized phage-associated protein # Organism: Lactococcus lactis # 4 306 5 303 306 178 35.0 1e-44 MVYKKDFTTTYTINGHEYSITSPALFDSNTNELIPNNELDDKAAEKARQLYRKDMDLISP QDLKKYRAKLSLSQRNLAELTGLSPNTIALYEAGAFPTAANNNILKALIKNDQVLQQYLI DNSNQYSDELLSKINSYLKNENSIISPDKIKPKYTAVQLANWLLVENYFERECNKNIDPL SQMKVIKLLYFAYGRYLASTKNKLFSSPIIHLQYGPVVTEVHEKFKGQTVLNDEKIEKGA IEDYNTVSQDGEISELLHAVNQKYIDYTAAGLSKITHRKGSPWSLTQEKLIIKDQLIFDS FSKGREE >gi|313656766|gb|GL545251.1| GENE 365 401207 - 401386 194 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472084|ref|ZP_07812576.1| ## NR: gi|313472084|ref|ZP_07812576.1| hypothetical protein LBJG_01544 [Lactobacillus jensenii 1153] hypothetical protein LBJG_01544 [Lactobacillus jensenii 1153] # 1 59 1 59 59 103 100.0 4e-21 MITLKFMSIELLEDNQDEWVYSIYTDYQEGQIAINKSNFDGKLTSFKKASDLLGIKKEH >gi|313656766|gb|GL545251.1| GENE 366 401783 - 402538 382 251 aa, chain - ## HITS:1 COG:BH3551 KEGG:ns NR:ns ## COG: BH3551 COG0582 # Protein_GI_number: 15616113 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus halodurans # 1 251 109 374 378 118 31.0 1e-26 MFQAFLNQISIKYSKSTVNQTAVVFSQIMKLALADGIIVRDVTSFVQIPEKAQDKRKIDY LSLSDVKALVQHIKSNLSTSKVGPYFILTAIQTGARLSEIAALTWNDLTPTSIKITKQRN RDGVVSKPKTESSVRTVSITKELYNILQDLKVNKKDLIFEQPNGIVPDPSSLNFTLRRLL KECGIKRHGFHFHSLRHTHVALLLNADVDILTISQRLGHKNVSTTTEVYAYLLDEKKKSE ERKIKSVLETM >gi|313656766|gb|GL545251.1| GENE 367 402971 - 403501 483 176 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855031|ref|ZP_04645360.1| ## NR: gi|238855031|ref|ZP_04645360.1| hypothetical protein LACJE0001_0539 [Lactobacillus jensenii 269-3] conserved domain protein [Lactobacillus jensenii 208-1] hypothetical protein LBJG_01546 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0539 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_01546 [Lactobacillus jensenii 1153] conserved domain protein [Lactobacillus jensenii 208-1] # 1 176 1 176 176 277 100.0 3e-73 MNDKNAAKAKKPTTFWKFMLYWIGGLALLFVLIGIYAAVTQPQRDSEEAAEARSARKASS ASKAEEKKQAKKYNADNKLLEEKIKSTVSQNDDYLESVRFSGGSSSSHISLATITVKDDL LSYNKEQLQSYCNSLYEDLLLDIQSSGVGSCAVMLESEAGQSVAETNFSMTKLEVK >gi|313656766|gb|GL545251.1| GENE 368 403584 - 404099 311 171 aa, chain - ## HITS:1 COG:Cgl1884 KEGG:ns NR:ns ## COG: Cgl1884 COG1974 # Protein_GI_number: 19553134 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Corynebacterium glutamicum # 35 168 122 250 253 75 37.0 4e-14 MSAVINISNLIGVSVKELMFGTSDVAYSNEDLSMLHEPNNNYQTNSSIIPILGTIACGEP ILAEQNIEDYVSLVPSDDATYFGLKCRGHSMEPTIHDGAIAIIRQQPTVEDGEIAAVLVG EDANEATLKRVRHVNNAILLVPDNENFEPILGTKKDPIRIVGKAVRVLDIL >gi|313656766|gb|GL545251.1| GENE 369 404423 - 404668 291 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855029|ref|ZP_04645358.1| ## NR: gi|238855029|ref|ZP_04645358.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved domain protein [Lactobacillus jensenii 208-1] conserved domain protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved domain protein [Lactobacillus jensenii 1153] conserved domain protein [Lactobacillus jensenii 208-1] # 1 81 1 81 81 162 100.0 1e-38 MNGKKITWKTARLIAGFSQKDVAKALQKLGISEFMVGYYERKPDKMPMFMASALCHLYEI PISDIFLDFKSTVSRTNRKGE >gi|313656766|gb|GL545251.1| GENE 370 404670 - 405521 644 283 aa, chain + ## HITS:1 COG:SPy0946_2 KEGG:ns NR:ns ## COG: SPy0946_2 COG3645 # Protein_GI_number: 15674964 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Streptococcus pyogenes M1 GAS # 136 257 2 123 127 151 58.0 2e-36 MNNLQIFNFNGLDVRTVLIDGEPYFVGKDVAEVLGYRNTRDALKKHVDNEDKKSEIVNSS QLSQNATGYQNIDLITESGVYSLIFGSKLPTAKKFKHWVTSEVLPAIREHGAYMTDEKAF DVVNNKAGLADLLQQAADQLKQKDIQIAEMKPKALFADSVATSNSTILVGELAKILRGNG IEIGQNRLFDWLRKNGYLISKKGSSYNLPTQKSMNLGLFKIKETTINHSNGSVSISKTAK VTGKGQQYFINKFLNAEEHSGYVFTGDSETEVVLTTNNEPILH >gi|313656766|gb|GL545251.1| GENE 371 405536 - 405856 212 106 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855027|ref|ZP_04645356.1| ## NR: gi|238855027|ref|ZP_04645356.1| hypothetical protein LACJE0001_0535 [Lactobacillus jensenii 269-3] hypothetical protein LACJE0001_0535 [Lactobacillus jensenii 269-3] # 1 106 1 106 109 202 100.0 8e-51 MTKKHSICQVTFNGKSGRCYEGYIISRKFTETAMIFAQNHNFVLEFIPLWKAILFKRPKG KWVYLKDVSLEYLRETPFKVEKYSCIAEMDTYRKYKTNEEANREEK >gi|313656766|gb|GL545251.1| GENE 372 405857 - 406027 248 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855026|ref|ZP_04645355.1| ## NR: gi|238855026|ref|ZP_04645355.1| hypothetical protein LACJE0001_0534 [Lactobacillus jensenii 269-3] ankyrin repeat protein [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00885 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0534 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00885 [Lactobacillus jensenii 1153] ankyrin repeat protein [Lactobacillus jensenii 208-1] # 1 56 1 56 56 72 100.0 1e-11 MIKIADIEFEKDALNDGFKEFITELLKFLEGKTVLSSFYDDDKEQLEIQYLEKEEI >gi|313656766|gb|GL545251.1| GENE 373 406041 - 406217 178 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855025|ref|ZP_04645354.1| ## NR: gi|238855025|ref|ZP_04645354.1| hypothetical protein LACJE0001_0533 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_1186 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00886 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0533 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00886 [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_1186 [Lactobacillus jensenii 208-1] # 1 58 1 58 58 105 100.0 1e-21 MTKEKYYNYTCTGCGMELKKDDPVYIDNDGDWFCSEVCLAISNTSESFDTLEEAIANG >gi|313656766|gb|GL545251.1| GENE 374 406210 - 406734 496 174 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855024|ref|ZP_04645353.1| ## NR: gi|238855024|ref|ZP_04645353.1| hypothetical protein LACJE0001_0532 [Lactobacillus jensenii 269-3] putative citrate lyase acyl carrier protein [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00887 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0532 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00887 [Lactobacillus jensenii 1153] putative citrate lyase acyl carrier protein [Lactobacillus jensenii 208-1] # 1 174 1 174 174 346 100.0 3e-94 MAKIAISKNDICQLINGSDLGVKALLLKDDNQIVIARGCFGLVFDLNKDLTELFPDHPEL EAVVFEGLIKQYRSMINLKMPDAEYFKKHNKQEFSKDVLMISDCFCDGFWLGYDTRSDDY LLTWEDYSVRAPLDIKFYLVRPVTFKGKAYEELDNFIKSTYYRGIIDLNFVLGD >gi|313656766|gb|GL545251.1| GENE 375 406736 - 407065 346 109 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0577 NR:ns ## KEGG: LGAS_0577 # Name: not_defined # Def: phage related protein # Organism: L.gasseri # Pathway: not_defined # 1 109 1 106 111 104 48.0 1e-21 MEDLINRKSLQDLIKSTFLEMRPKLEDELTGRTIKLDEFRKKYCGGKSAEWVRTFIFDKF RNEIDYETGGWCINPRQNANGRYAIIFEDTAAKWMKENRHRINWYAKLR >gi|313656766|gb|GL545251.1| GENE 376 407069 - 407425 272 118 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855022|ref|ZP_04645351.1| ## NR: gi|238855022|ref|ZP_04645351.1| hypothetical protein LACJE0001_0530 [Lactobacillus jensenii 269-3] putative phage shock protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0530 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] putative phage shock protein [Lactobacillus jensenii 208-1] # 1 118 1 118 118 216 100.0 3e-55 MTENNDRLRHKFHFIFNGDGFFWSTPDEKAKLICRTANRDFNTVAEIVKWNDYVDKHYKG KNKVKYYFCIETESDKSVFLYDFTGKRPKVCKDKEMTEKAFEGKLPLFKLRGEKEDEL >gi|313656766|gb|GL545251.1| GENE 377 407422 - 407631 237 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472094|ref|ZP_07812586.1| ## NR: gi|313472094|ref|ZP_07812586.1| hypothetical protein LBJG_00890 [Lactobacillus jensenii 1153] hypothetical protein LBJG_00890 [Lactobacillus jensenii 1153] # 1 69 1 69 69 117 100.0 2e-25 MKLLQAWREKQAVTYQDLLNTILKRWNKQITVDGAFKVWCITAMLLAVISIWCVVFLAQN PDLPWDNNI >gi|313656766|gb|GL545251.1| GENE 378 407740 - 408204 219 154 aa, chain + ## HITS:1 COG:no KEGG:BAA_4145 NR:ns ## KEGG: BAA_4145 # Name: not_defined # Def: prophage LambdaBa02, DNA replication protein # Organism: B.anthracis_A0248 # Pathway: not_defined # 11 127 11 127 238 97 46.0 2e-19 MGKLSKKFVTHFTTIPNSVAQNDQLSWKARGIFLYLASKPSDWQFYEIEVTRHAPDGRAS LRAGLKELEDKGYLKRYRKRNDKGQVIDSDWIITDEPMFNNPMSEKPMFEKPTQVNRTLQ NKDLTKKIIQKKDIQNIVWLSQTIALRKLKTLSK >gi|313656766|gb|GL545251.1| GENE 379 408485 - 408916 377 143 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855020|ref|ZP_04645349.1| ## NR: gi|238855020|ref|ZP_04645349.1| hypothetical protein LACJE0001_0528 [Lactobacillus jensenii 269-3] putative dihydrodipicolinate synthase [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0528 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] putative dihydrodipicolinate synthase [Lactobacillus jensenii 208-1] # 1 143 1 143 143 243 100.0 3e-63 MSKFTKREVKFLSSFLGAFNASFDDTFENWIPQNVQEQENWKIKHNNRSNSNVEFVSNEI PFSIICYPTVVVLFDQIFNQELTQWHWDFLESKGIDDLFNNDRLVEWFSNLSVEEQENVK SMYEQVNKIYSSFMKGSQNGEHS >gi|313656766|gb|GL545251.1| GENE 380 408900 - 409706 410 268 aa, chain + ## HITS:1 COG:L0311 KEGG:ns NR:ns ## COG: L0311 COG1484 # Protein_GI_number: 15672431 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Lactococcus lactis # 64 260 96 288 291 121 39.0 1e-27 MESIANLLAVVEVDETCPKHNCKLATIAGRDVKPVCPKCELEKLLAEKKTFDQKITAELS KRWLRRDSLVDDEDTFKCSFDNFKHKPGTQEDRVYQLCHKIAGQYYQYPEAKFNTLLVGT AGTGKSHLAMSMLKAVNDHSKAQKCLFINIAELFQKIRNSFNDPSEYWTEGRAVLKITDA DLVVLDDLGTEASMRASGDEASQFVQRVLYSILNSQKRIIVTSNLTVEQFQKVYNQKLFS RLTRGAKGHVVDFTQLKDKRSEWQNLMK >gi|313656766|gb|GL545251.1| GENE 381 409685 - 410176 434 163 aa, chain + ## HITS:1 COG:SPy1830 KEGG:ns NR:ns ## COG: SPy1830 COG0629 # Protein_GI_number: 15675657 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 13 163 1 163 163 148 48.0 3e-36 MAEFDEIKEGYQVINRVVLVGRLTKDINLRKTQSGISVGLFTLAVNRQYSKDKEHKEADF VSCIVWRKGAEILSQYTHKGSRIGIDGRIQTRNYEDKNGQRVYVTEVVVDNFELLDSKPE QATTSTSVAQTQTTTQAQPAQQTPDPFADGGDTIDISDDDLPF >gi|313656766|gb|GL545251.1| GENE 382 410186 - 410791 391 201 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855017|ref|ZP_04645346.1| ## NR: gi|238855017|ref|ZP_04645346.1| hypothetical protein LACJE0001_0525 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_1178 [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0525 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_1178 [Lactobacillus jensenii 208-1] # 1 201 1 201 201 394 100.0 1e-108 MEAQQLADIQNLEKKYGSLSQVPEDNEKLLKLRKSFSGNYHDTPLTKAFGRSISENSLHR VKVAARNIGEKGRQEIIDLLKDGYTSTEISTVFGYNTAAISGVRNIYHIEARPHFMYELK KDGKPVLYTQTLGQVRDFTKYKPKRMYYIAYKYIREELSEQGYVLTRGYYNWRCIPKNCL VNFSKGENMFLMKKGDVKFDN >gi|313656766|gb|GL545251.1| GENE 383 410907 - 411200 282 97 aa, chain + ## HITS:1 COG:lin1248 KEGG:ns NR:ns ## COG: lin1248 COG4570 # Protein_GI_number: 16800317 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Listeria innocua # 3 95 44 136 145 83 39.0 1e-16 MCAQRVYSGEPLETPLKITVKAYFGLYKSYTNKRREACLSGQEVPTKKPDIDNIVKGIMD SLNGVIYHDDKQVIQLVAFKAYAEKPRVEVTVEELEQ >gi|313656766|gb|GL545251.1| GENE 384 411197 - 411721 452 174 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855015|ref|ZP_04645344.1| ## NR: gi|238855015|ref|ZP_04645344.1| hypothetical protein LACJE0001_0523 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0523 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] # 1 174 1 174 174 311 100.0 9e-84 MTKLKCTRLIFEKYDRVVTVEYEHVIEAMSEHKPIVGRSADFRNDNGEYYFAEDLKEVAF NPKFVFYAEPIEVIEKFEETKFYQKKIAQLDELQRAIENSKFYKSQNLKFVVRKSISKFD NQLSSLQFFEKNSHEAMFSVNDFLKNGGIIIYNPQKIVTTGLEKSGGGLYVLEN >gi|313656766|gb|GL545251.1| GENE 385 411780 - 411971 78 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855014|ref|ZP_04645343.1| ## NR: gi|238855014|ref|ZP_04645343.1| hypothetical protein LACJE0001_0522 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_0522 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 63 20 82 102 128 100.0 1e-28 MWCNRDAWFAFRNQNFYEKLEFLSKEPALNIGTKWFESGLAKIKDGELVDNDCRLSIFYD DKK >gi|313656766|gb|GL545251.1| GENE 386 412040 - 412825 636 261 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855013|ref|ZP_04645342.1| ## NR: gi|238855013|ref|ZP_04645342.1| hypothetical protein LACJE0001_0521 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00899 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0521 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00899 [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 261 1 261 261 485 100.0 1e-135 MNKKIYKKVADLIEEKFGHNKLEILSIEPCEYYPDGPYYQVITKSLEDGKQYINIVVLGE KDYRRKDLKTESLKYLTCQIGRQLALNKIEKNYPNIANAVEKEHKFNYFSPDKGYSHTFT FTVMSYDYLVDTLTITVVVTEDDLKNPPDYSRNLNYKATMQQLNLKEIGAVRKLYYEFMK KSITKMIYSQFLLLISVFAALTSLFAGGSDKFELLALSTILLILSGSWVLIEQILSFKKE NEFISRLEELKWRVENDKVQM >gi|313656766|gb|GL545251.1| GENE 387 412806 - 413051 250 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855012|ref|ZP_04645341.1| ## NR: gi|238855012|ref|ZP_04645341.1| hypothetical protein LACJE0001_0520 [Lactobacillus jensenii 269-3] putative membrane protein [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00900 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0520 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00900 [Lactobacillus jensenii 1153] putative membrane protein [Lactobacillus jensenii 208-1] # 1 81 1 81 81 150 100.0 3e-35 MTKCKCKKCGFDTTIEALLAIDCVIAIGMFFIGIILKKYGYIFGFVGIIFSMGILLWTQA ERANRREIRDKLREVNYDKRR >gi|313656766|gb|GL545251.1| GENE 388 413035 - 413283 310 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855011|ref|ZP_04645340.1| ## NR: gi|238855011|ref|ZP_04645340.1| hypothetical protein LACJE0001_0519 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_2563 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00901 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0519 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00901 [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_2563 [Lactobacillus jensenii 208-1] # 1 82 1 82 82 152 100.0 6e-36 MTREDKEWHEIAKMDLEELVDFIHLTFWDYQETDNDKYLMQLKVAGHYLNRKALDIQLAE VFSLKNKGGIKDEECGSCDAIS >gi|313656766|gb|GL545251.1| GENE 389 413249 - 413722 471 157 aa, chain + ## HITS:1 COG:no KEGG:LJ1443 NR:ns ## KEGG: LJ1443 # Name: not_defined # Def: Lj928 prophage protein # Organism: L.johnsonii # Pathway: not_defined # 7 152 1 146 146 118 40.0 9e-26 MRSVAVVTLFPEIDTEKTAKKVKQFLRGDFVRAIRLSGYDLNSLSSPKLSLAPAHGATGN VIERQIIRSLEAKTVVQAVHESIFRCTATSRQILIGIYIEEKPIFQVSRLVQYQHTQFDV MHKRALNEFADRFEYWQGVLCVKDPEDLHVYRGNDSE >gi|313656766|gb|GL545251.1| GENE 390 413709 - 414032 351 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472106|ref|ZP_07812598.1| ## NR: gi|313472106|ref|ZP_07812598.1| hypothetical protein LBJG_00903 [Lactobacillus jensenii 1153] hypothetical protein LBJG_00903 [Lactobacillus jensenii 1153] # 1 107 14 120 120 200 100.0 3e-50 MTVNEIISDMMVDTWNLYSIAGMKVKYFIVYANTLKDCLRDGKALFDKDFTIADIDTVDS VLRLLLKYNDTVDSVVNAHPKGCNIDKQPIHETTELDLFDLFPEHNK >gi|313656766|gb|GL545251.1| GENE 391 414678 - 415424 491 248 aa, chain + ## HITS:1 COG:lin2410 KEGG:ns NR:ns ## COG: lin2410 COG0286 # Protein_GI_number: 16801472 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Listeria innocua # 10 225 11 212 237 184 46.0 1e-46 MISKDQFWKIAGVTQHIQFENYLRKIVFDPEKRNDFFKQLLKLDAQCVVQDTFKQYFEEY VAERKANQQDYTPDEVSKLLSIIVNTKYNADFKNDIEKRYFHKKGYTAADITAGTGSLLI QKWWADMTAELPWTYVPHRYFYFASELADNVIPYLLCNLALRGMNAIVVHGDALTGETKQ VYFIQNSKDDYLSFSDINVMPHSKQVAEEFNVTKWLEEAIDHIESKKIIRRKDYGPMLKR ALHMQTGG >gi|313656766|gb|GL545251.1| GENE 392 415457 - 415804 264 115 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855009|ref|ZP_04645338.1| ## NR: gi|238855009|ref|ZP_04645338.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 269-3] # 1 115 261 375 375 243 100.0 3e-63 MLLGRFATIERAKAKKVYPKGTVVIQISATRGQCGMLTSSGEVGSQYACIQFKPYIDSFT GWMKVKQEIPRWRHKYQEGLNIKLEDICKIPFNIPINWLLPFEEQQRLKEERGYV >gi|313656766|gb|GL545251.1| GENE 393 415801 - 416223 434 140 aa, chain + ## HITS:1 COG:L63293 KEGG:ns NR:ns ## COG: L63293 COG1403 # Protein_GI_number: 15672449 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Lactococcus lactis # 1 136 23 173 189 96 33.0 2e-20 MRVHMCGQRGCHTVVPIKQRYCDVHAPFHKYIPKPVSHEQRLLYYKHYNRFERSEEATEF YSSAKWKRVREYVASRDLYTSAVSGRVIDDHDLIVDHIVPRRLCQNPLDTNNLWCLSKGE HTRKTILEQKIAERKMVTQF >gi|313656766|gb|GL545251.1| GENE 394 416416 - 416949 535 177 aa, chain + ## HITS:1 COG:L64021 KEGG:ns NR:ns ## COG: L64021 COG3747 # Protein_GI_number: 15672450 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Lactococcus lactis # 40 162 18 138 150 79 31.0 3e-15 MAKGRNLKLTTNPNSRPEQREQTEKLKKVTENWTPLQKTPPSYMKGTLAATIWQRLIPIL QETGVVKQADKATVECLCSAIQLYREAFENVQKNGIQREVWTTPILPTGETLDKEFTRYQ KNPAVTTMDSAMKQIKTFSSDLGLTPASRASLMASIDSQDDDTPSLAEILNAKSGDF >gi|313656766|gb|GL545251.1| GENE 395 416949 - 418853 1059 634 aa, chain + ## HITS:1 COG:L37002 KEGG:ns NR:ns ## COG: L37002 COG4626 # Protein_GI_number: 15673381 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Lactococcus lactis # 26 633 38 638 657 463 40.0 1e-130 MKKYDFTKKGFDLQTAYTEEKDAGKYTEIFKNYRDPLTKYAFSVLEGRVQAGYMIKLACF RHLQDLRRQKEDPEFKYHYDLNKARAILNFAKLVPDVNAGVPLPLVDFQKAILCSIVAWR DEKDRVRYVRATLSMARTNGKTYIAAILAAFYFLIEANDTYNRKYLFVAPTTDQSRVGFD YLRTMFRKMSESPAFRQTFKDQQIDVLTDQIISRVYNNILMRKSYESGQLDSFHYQFAVG DEVGDDKYIGKIRTGNGKITSGQAQEPNHVFLQISTAYPDSNSQFYKDQRLLQFVMERDC DRALDDNLCLIWEQDALIEVDKPETWCKSNPIMNLSPEKKDQMLKSLLSERENKMLDGSI EEFQNKSLNLWLQVKKNTYLQLDDVNAAIVPEEPVNIFGRAVYIGFDKSNFSDDTALVFV FPYLDGANNQRFYIKQHSWVPLARAQNNIEIKEKQDGINYRDAERKGYCDIAKNEYGYID DGVIFNWLVDFVEKNHLDVQYFCYDQWGMSRMIGWIEQKLDWKTMAVKNVIQTLTNPTID LRQKFDTREIRYLDDPIIKYSLKNAVLFSNNNGIKVDKEKATTKIDFVDALIDAWYTAMF HFDDISLEKKNKNDPFAGMSEQQINDYFTNNFSF >gi|313656766|gb|GL545251.1| GENE 396 418863 - 420032 986 389 aa, chain + ## HITS:1 COG:L66478 KEGG:ns NR:ns ## COG: L66478 COG4695 # Protein_GI_number: 15672452 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 27 365 24 358 359 208 37.0 1e-53 MAFLSNLFKRQKMLSGSSPVWILNQGQSVSIKPKAITSAIALKNSDVYAVISRVSSDIAG CRFVTNAQPITDVLNAPLGNLMSGFSVWQAMIVQMMLTGNAFAIIDRDTNGYPVRIEPVP NEKVTVALDDYGKDLTYTIHFDDSKRSGDFLYDSSEVIHFRCTVSGESDTQYMGIPPIDS LLNEIEVQDLSSKLAISTLRHAIKPSIFIKVPNATLGKEAKENTRQSFEDQTTGENAGRA VVLDQSADVETTNISPNVTEFLQNVSFSQDQIAKAFGIPADYLSGKQDAQSNITMIRAFY QSSLSIYIKPIESELSQKLGTDVKLDIASAIDSDNSELINNVQKLASAGVLAPIQAQKLL KNRGVFPELDLDEGTNLLDNTQNINDKNN >gi|313656766|gb|GL545251.1| GENE 397 420130 - 421977 1688 615 aa, chain + ## HITS:1 COG:L112195 KEGG:ns NR:ns ## COG: L112195 COG3740 # Protein_GI_number: 15672503 # Func_class: R General function prediction only # Function: Phage head maturation protease # Organism: Lactococcus lactis # 19 193 13 192 196 144 45.0 7e-34 MPKNNDFKCDVRSINLQLASLTTRDAENGSHKITGYGMLFNQPSVPMPFIEYIKPEALDG LDLSNVMLLRSHDFDQILARVDSGTLSVRVDDKGLYFEATMPETTLGNDTLADIKAGNIK GCSIGFNIGDDDWSRDDSGQTIHQINEISQLNEISLTPIPAYQQTSANVERSLKQFLEKG GTEMPQEVKDLKDKESGTQEPNSTDENSKEETRDDSSKKDEKKPDIDIDDLAKRVAGILS KQAKRDDEDDSSDDSDDSSTDSDEEDKDKNAGKQTTRKSQKRDANPEQETRDNKGGMKMP KILNQKTDSPVAENKRDFLHYLKTGEVKRDATEGGIGLSTGQVLIPQDILAAEHDQHQFA RLGNMIRTISVKHTTGKLPYFSEETGKLTKRTGEFVPSETGSAPQIKQILWDLKSFSKKY PYSIELLNDSDYNWEAELAQRCVDLKDNTDDDEIMKVLTNNITASTTGDLLASITEAIDK KLKPNDSKQSNIVLSQAAFYYLDSMKDTMGRPLIQPDVTKATDGFIKGKSVVIIDDTLFP NAKDGDVNMIITPLQKAAIKFMQNEVTGKFIDTYDEFFRILGIYMRADYQQYRGDLINWY TGNKTVTQAASTPGK >gi|313656766|gb|GL545251.1| GENE 398 421998 - 422297 356 99 aa, chain + ## HITS:1 COG:no KEGG:LAF_0474 NR:ns ## KEGG: LAF_0474 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 10 97 7 94 100 82 50.0 4e-15 MTLDELKTQLLQELNLDDTEENQSTLNALVEDSLSFVKDSVDSKADTEEMLQDGMFVRAV KTLATQMFYDRTLANGTSIGLRMMLSHLKGKVGSNGWLR >gi|313656766|gb|GL545251.1| GENE 399 422281 - 422652 248 123 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|219563202|ref|YP_002455794.1| ## NR: gi|219563202|ref|YP_002455794.1| head-tail joining protein [Lactobacillus phage Lv-1] putative phage head-tail adaptor [Lactobacillus jensenii 208-1] putative phage head-tail adaptor [Lactobacillus jensenii 1153] head-tail joining protein [Lactobacillus phage Lv-1] putative phage head-tail adaptor [Lactobacillus jensenii 1153] putative phage head-tail adaptor [Lactobacillus jensenii 208-1] # 1 123 1 123 123 236 100.0 4e-61 MVGYVNAVQPYLMQKTCTFGSYGTSQALSGMTNRVFKPAFKVHFSNVKQTRSQKYELIGT SFENSRVIKIQHGKENSHKLQSCTCVQIGGVTYDILDVSLDEDSYVTYDLVTIKESKRGA GHE >gi|313656766|gb|GL545251.1| GENE 400 422645 - 423103 539 152 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472115|ref|ZP_07812607.1| ## NR: gi|313472115|ref|ZP_07812607.1| conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 1153] # 1 152 15 166 166 268 100.0 1e-70 MNDLDDVLNDFYKQVASKVNLTAEQKAEVTGAGAKAYAEVLKDETPVSDLDYGKARKIGA GKNGLHDHHLRDGITYKEGYTIDNAQTGDTDVGWNKDDDIALLGWVNDGVMKMSTKQMAN LHFVQRAQQKAAGKIAEAMSSKLSEVINNEHD >gi|313656766|gb|GL545251.1| GENE 401 423090 - 423479 314 129 aa, chain + ## HITS:1 COG:no KEGG:LGG_01529 NR:ns ## KEGG: LGG_01529 # Name: not_defined # Def: phage-related tail component # Organism: L.rhamnosus # Pathway: not_defined # 8 125 4 121 126 67 33.0 3e-10 MSMTRLPVVEAGEVLRSASIDGIDNICLYRVPPETQDTSDSTTVLLTEVTEDLTNYGSDK FQDRNQSVELQIFFSTKEDVDIDSIERQIESIFLAKKWRIRLSRAHTVDPTTEQLVKIYY LDRTERNDF >gi|313656766|gb|GL545251.1| GENE 402 423479 - 424081 762 200 aa, chain + ## HITS:1 COG:no KEGG:L31473 NR:ns ## KEGG: L31473 # Name: pi317 # Def: major tail protein # Organism: L.lactis # Pathway: not_defined # 1 194 1 192 197 75 32.0 1e-12 MQITGFDSFIIALTDDTGKIKTDNKAFNKNGLFYANAATSKGATQFNIQNISPAAQAIYG SDLRTESSVGVPTPTATFGANDLPIEITAALLGADHDDTNKGYAVKRNKLVNAAIIGVTH SGENKFYWAFPFGTVTQSGGMNWQTNNQNEVLVHDVFQFAAQARPADDLLYQFFSSGEEG FTEEAMLTHIFQGYTSTASN >gi|313656766|gb|GL545251.1| GENE 403 424156 - 424362 145 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|260665416|ref|ZP_05866263.1| ## NR: gi|260665416|ref|ZP_05866263.1| tail protein [Lactobacillus jensenii SJ-7A-US] tail protein [Lactobacillus jensenii SJ-7A-US] # 1 63 1 63 204 87 74.0 2e-16 MCRVGWRNRKDIMAKFDFDASKIGLKKEYQLSQSFTNTERATEFQKKIWNLLTMAKIKRL SLLGMQVS >gi|313656766|gb|GL545251.1| GENE 404 424299 - 424769 337 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854999|ref|ZP_04645328.1| ## NR: gi|238854999|ref|ZP_04645328.1| hypothetical protein LACJE0001_0506 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_1279 [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_0506 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_1279 [Lactobacillus jensenii 208-1] # 1 156 37 192 192 238 99.0 9e-62 MESFNDGKNKEIELVRDAGILTSLSSEKAEDLKTFERIEKKYNTYLDVPKEILEDLDISL EQRSQILGLTIQMLQAENERNAKIAPIQCAAEFITQVLGLKASDKKKLEEADVDDLKDTA TLLCHKILGTEDTEPDEADLKSTNRPKDKKTSKSSR >gi|313656766|gb|GL545251.1| GENE 405 424943 - 429577 5015 1544 aa, chain + ## HITS:1 COG:L72137_1 KEGG:ns NR:ns ## COG: L72137_1 COG5283 # Protein_GI_number: 15672461 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Lactococcus lactis # 7 874 20 849 1076 230 27.0 2e-59 MGSTPEGKFSYRVGMENTSAVTSLKDLKNEITQVSSAWKTQALELKQAGDKLGAAEAKFK GVSDALEKQKQVIERLKAQQSELKKAQGEVDRSTEAGKNAFSSYQDQITKTERQIASATS KLNSLSNQQEKAKNSVEYYKSGLADAQSELRKISSSSKAYIDRLEAEGKATEANKAKLSS LKSTYEQLNKIYDVQVKELERIENSAGKASDKYRIQKQRVDETATSLAQTKTKMSELDSE IRKANPSVFDKMKSKLAGVNKEGEKSQGIFKKVFSGAFLGNLASNAFSSVESGLKGIISN GIEVAKAGAKIQAQWTGLGKSAQETEQLISQMKELKANTNLTGESATQLQMTMNRATNGN TEEAMKLSRAVGVIGDNTKMTSEQMLGFSQAMARVMTGSKVTSSQWNRMSKQAPGLGAAM AKAAGVSESAFAQMIDSGKLSTKQFKQLLEKVGEDGGKAYSNFGKTQAGAMKQMQARWQD LQKQIAAPLFDTQNKAVQQLSKLMASPALQQGAKDLGKAIAQVAVWGTKILEYIGKHEKD ISAMASDVVEIAVTLGKDLWKTFASVVSTIADAFGLTSKNAAKSKDPLKQIRGALDGLAK NKGAIKMIAKAIVAIAAIKGLTAVARGIYGVGSAIHDTYKWVKGLPGAVEKSISSLKQLG TATKDLLNGKTAGGAFQSLKSAGGFGGLSTAGKITTGIAGAGVALDAGSSIFQGLTKDIH NADKRSADIGKGIGAGIGGGIGLWFGGPAGAALGSAIGGQIGKWGGQGVNEFTKGWQAEG KKNKPKNFVQWLGFGAHKSFDFFANMAKKVGHHINTNMKGVADDIKKKKWGNIISDVFFG KDATNYLNKNMPKFKKAISKGSKDIQKSWSSFWKKVGKNTDKSWKSLQKSWSRGTQKLNK GWSNFTKKAKKGWDSYWKTVGNKAKSGWAKTKSLWNKGTTALHKGVTNFSKKASNAWKSY WNKVKAQHKSGANALKKTGSALTSSLKDYVKKFVTVSSENFKNFFNDVQKGSSDFSKHMK DNHNNLFKSMLQTAGDGLKSMASDWQSKWNEISSNAGKQWDNLKNSHNTTVSGIAKTTES VLNSIKNTWTSVWNSISNFFKDVWGTIKNSARSGVNGVIDIVNGMVGGINSAWKFFTGKN AFGSLHHVATGGQIEKKHGRLAVINDEKSENYRELVQRRDGSLEMYDERDKIIPVEPGDY IYNAGETKRLMEQAGLEHYASGGWVSGIINVASNAVSGFFTGIKDKFELAEKWLKNPAQA LTNLVNSAISGLLHGNANFVKFGEDVVHKMVAGFQAKWKEMLKKVDDQIQNPPGSGVERW RSALEKALEMNGLPTTGAYVNAWLRQIQTESSGNPNAVGGTDGLADGHATGLLQTKPGTF RANAFPGHGNIFNGFDNMLAAIRYALRRYGSSMLAVIGHGHGYADGGIATTPSIFGEAGP EMAIPLSAMKSAKSYQLLGQTAAILAARDHPDTSMIADSASLSHISETLDTIANLLTMWA TSEATIENTINLDGRQVASGISKYMRKDLATAVLNRRLNISELR >gi|313656766|gb|GL545251.1| GENE 406 429564 - 430304 406 246 aa, chain + ## HITS:1 COG:L63101 KEGG:ns NR:ns ## COG: L63101 COG4722 # Protein_GI_number: 15673032 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 13 246 13 249 249 81 30.0 1e-15 MNYAKLVYRGRSSEDFGAKITYPLNIVQPKRNITATSVSGVNGDFLIDSKNYGNIQQPIN MLVEFPKGYKDWTEWFMEFCDWLQPQDRDRTAYEEWQLSMLEPYRFIGYVADPPTISISN SILANVNFTLTVKPFVMQYDGLIWRDVPQTVINHERYSSQPTFHIVGSGDFTLTINDLQY KLTNIDDEVYIDSENCLVYKSKTQNRATCASFPNNDFPELASGINKISLSGKYSKFEYQA KWRRKL >gi|313656766|gb|GL545251.1| GENE 407 430286 - 433072 2450 928 aa, chain + ## HITS:1 COG:SPy0700_1 KEGG:ns NR:ns ## COG: SPy0700_1 COG4926 # Protein_GI_number: 15674761 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 22 240 15 220 431 69 25.0 3e-11 MEAKVVKVKATLHTVASDSTDTLGLGALTGATSMQVVRNANQIPQLTMTYKADAPLADEL VSGRVIVCAMGKSSEEQNQKFRIINVSKDVGSMSISVTANHIAGDLSMMPIYKNISIANA TPKDTFKAVMDSLAYGSNLADYQFTTDIQKVANVAWQFSDVDNANSIFLGDDQAGDTVAQ TMQAIYNGQWKFNNYHWSLLKHAGQDSGIIIKYGRNMLSAVEDHTTDSTYNAIMPYASYT PNTTLVDGSAMDGRGTVQYLGTGGAEVYDSPTKGNKVVGHVQNGAYYQVTAKAEDNTCNG NVWYKIGDGQWIDEHFFTFDKSGNYVINATTGQGTIKITSDNDNNRGIVSDYRGLGTVVY AGLGRVRLWSSPLTGHKPMEQYVENGVQYKIWKIGYDEYGRKWYCIGNDNQWIPDEYFSV TKSSDYVTTPVTGILHVKTANAISAYGPSGEALRSDKLAAGSFHKITSVSKANDGTSWYE IASNFWVKGDDNIDFTQSGSVAVDEDTSRKAIIQSTGKIAVYGSPDGTNATGQYLWNGTQ VKITGQSDSNGHTFYRLDSGGWVDASYFDFSSASDVGIGGANDSDAQVETQTLMLDPPVL ISQYATGQESLRVQAVDLSSYNVGSDKDKLKTVAEQYMREYRIGRPNYSLTVEYPNIEDE FSQLRQVDLYDYVGIQVDELNILDKAMVNSVTYDVLLNQNISVTIGQLPLTYEHLLGQMQ HETTKQLATVEKKSNHLFGQMNQAMKLQGDAQKAALLKIGDQLGVESKNVEALQTRIDSI NNQVIDVQSWISSGGSGVITAYPNWANPTELRAQSADGGYLKFNGNGLGYTGPDGILRSA IDSQGRVVAESISGGTITGVTIKGAQITADTMINIHERYYTVLSGSYGFSVSDGLGNESS ITIDRIKVGGTTINGSQLYQVMKKCGVL >gi|313656766|gb|GL545251.1| GENE 408 433072 - 433290 220 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472121|ref|ZP_07812613.1| ## NR: gi|313472121|ref|ZP_07812613.1| hypothetical protein LBJG_00919 [Lactobacillus jensenii 1153] hypothetical protein LBJG_00919 [Lactobacillus jensenii 1153] # 1 72 6 77 77 98 100.0 2e-19 MDLNITSDDVLNTAMAEITRLESISLRQQVVLAKYEEKIKDLQHELDMRDKLKGGDNSES TKSDTSHEQETN >gi|313656766|gb|GL545251.1| GENE 409 433244 - 435034 1301 596 aa, chain + ## HITS:1 COG:no KEGG:LA2_07605 NR:ns ## KEGG: LA2_07605 # Name: not_defined # Def: hypothetical protein # Organism: L.amylovorus # Pathway: not_defined # 24 289 26 293 605 72 24.0 6e-11 MSLQNLTLVTNKKLTNLQDAVIRQSEKGLTITAVFLNEDSSPYDLTNKKVTFNEHKDSDK YVVDTNVKITDERNGAISYTLHPQCYAATGEAWFEIADSSGTVVDSTQNFNLKVKDAANA SIYNTNYITQLDALRDQMQALVDNADGQLKQQLKTTQDQMNQKLTELGNAYQLAEQGRAN AYKQAEANRDSGWSQDKQRIDNEWNQDKDRINGEWNSQKQSIQNTANSQQSSISSQWSQL KSNADSQLATIQANINALQATIDDINKNKVPSLNSSLQSAQDKLDKILASLGNFVVSSND VNSIASDKVTEIAGNLIDPNLNNWTKGTYAQKAFKSITFDGTTNNVSYQGVSGTEVIYTK LNLELYKHYKLRFRFTPKSDIRDLSNGTGGTIQVTIWRYEPGQSGRWGAEQGTWNTTSQI KNISIAQDKFYEIGFYSDNAKDLYFGFNFNDVRDSVVYNFEISSISVVNIDNTIQSLADS SYPRKAGAASDDLFSYKDNHEIRVYEGIGKQVKNAPKGVSNWYSAIINTHYNNWGYMIIR GQTGATANNWYATLNGGVWTDWYSIYDSSTTFSKNEINQNFYRKLILTTRSIFLIR >gi|313656766|gb|GL545251.1| GENE 410 435241 - 435669 452 142 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472123|ref|ZP_07812615.1| ## NR: gi|313472123|ref|ZP_07812615.1| conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 1153] # 1 142 51 192 192 270 100.0 3e-71 MIAGGNGNGPNWARELAIKDDFANYYSKSEIDTKTSDLQIQSNANTSNLRMRCDNLETRC KNLESRCSSLETQLNVLQGQMADLLGAISISGDTLQINKKLAVRGNITTYWDGADQFIVY SGHNAKRGYFGMYDNGTFKVNG >gi|313656766|gb|GL545251.1| GENE 411 435692 - 436168 579 158 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854993|ref|ZP_04645322.1| ## NR: gi|238854993|ref|ZP_04645322.1| hypothetical protein LACJE0001_0500 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_1273 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00921 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0500 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00921 [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_1273 [Lactobacillus jensenii 208-1] # 1 158 1 158 158 243 100.0 3e-63 MAEEQTQTQEVKDTNVKQADGMYHYYISTATRGGDITCQTFITEQKIERNLYPIIVTPPD DSIQNPVFDWTNIKWVEVDSATLNAKIAAVADDVQALTKSLTAIQTQNQETTKENAQITK TLDGLNANMGTLTSMMSMISSKLTPSASSTTTAEGGQN >gi|313656766|gb|GL545251.1| GENE 412 436168 - 436362 265 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854992|ref|ZP_04645321.1| ## NR: gi|238854992|ref|ZP_04645321.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 64 1 64 64 111 100.0 2e-23 MNELVVSQAFNLLMLQCVTYCYNVGVYDKAKVATFVELKQITKEQYKDLTGDDYVEASQT APQN >gi|313656766|gb|GL545251.1| GENE 413 436322 - 436720 332 132 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0629 NR:ns ## KEGG: LGAS_0629 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 18 131 1 114 119 63 29.0 3e-09 MTMLKLLKQRLKTNTLHIIIGCTIALIGLELWLNKGYFFWPPNASSVLNDDVVGFFGTAL GCGIILWSFSRDQNSKTNQIFLTLATAFMTLLAFVELGHALFMHYPRIFTNVITDVALIA VIMYVARHSDTK >gi|313656766|gb|GL545251.1| GENE 414 436739 - 436972 212 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854990|ref|ZP_04645319.1| ## NR: gi|238854990|ref|ZP_04645319.1| putative upstream stimulatory factor 1 [Lactobacillus jensenii 269-3] putative upstream stimulatory factor 1 isoform 2 [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] putative upstream stimulatory factor 1 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] putative upstream stimulatory factor 1 isoform 2 [Lactobacillus jensenii 208-1] # 1 77 1 77 77 113 100.0 5e-24 MRYTEIMQIIGMIAPSIFTYILASKKSNHDILKDNLNILQREIETTRLENDNLRKQVLEL MSENARLKNQIKVLRKK >gi|313656766|gb|GL545251.1| GENE 415 436977 - 437162 209 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854989|ref|ZP_04645318.1| ## NR: gi|238854989|ref|ZP_04645318.1| hypothetical protein LACJE0001_0496 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00925 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0496 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00925 [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 61 1 61 61 105 100.0 1e-21 MKPSIMTMNYVTLIQDEKMTIAEVPETLRPEVERWLNYFSTGQLPTIETNGNAAGGATNE N >gi|313656766|gb|GL545251.1| GENE 416 437152 - 437505 341 117 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472129|ref|ZP_07812621.1| ## NR: gi|313472129|ref|ZP_07812621.1| putative phage holin, LL-H family [Lactobacillus jensenii 1153] putative phage holin, LL-H family [Lactobacillus jensenii 1153] # 1 97 10 106 126 162 100.0 8e-39 MKINDYLGLLIIAAWIIKSFFDYLKVQDPKMAEKFQIVDDIAEWAVSLQATKDISNAQKQ VNATQAVVEQAKKAGVPITEESAKGAVEKAVAEKRASLNQNLLRLLKLRALLFLLYP >gi|313656766|gb|GL545251.1| GENE 417 437540 - 437719 125 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472130|ref|ZP_07812622.1| ## NR: gi|313472130|ref|ZP_07812622.1| hypothetical protein LBJG_00927 [Lactobacillus jensenii 1153] hypothetical protein LBJG_00927 [Lactobacillus jensenii 1153] # 1 59 1 59 59 85 100.0 2e-15 MKSRHQLKIAGRKPTEYWYRSEIPEKLQRKIDKKAINRRTRMIDKRDLRKEVANGFKCY >gi|313656766|gb|GL545251.1| GENE 418 437700 - 438821 1347 373 aa, chain + ## HITS:1 COG:no KEGG:llmg_2082 NR:ns ## KEGG: llmg_2082 # Name: ps461 # Def: bacteriophage lysin # Organism: L.lactis_MG1363 # Pathway: not_defined # 3 238 1 229 285 117 31.0 6e-25 MVLNAIDIASPYQDDINIAATGADIVIIKVTEGTSVVNPYWKTWADQTLAQGKCLGLYHW ATEADTTAQVNAFFNAIGSYKNKAVLFVDYEDYTSENGPKPIKYSGTRIAREILEKGSAK AGKPLGLYIALSTENSQDWSFAAKKYPLWVAQYNVTAPTYGFQNPAMIGNTKYWDTITLH QWTGTGHISGHSGNIDVSVFYGDKTTWDKLVASNGSNDLEVDEEMAWHPEVKWNQLGMFR INREGGINLYTNSELAFVTQENGADAVRKYGDFVVWEAKKGAVRLGTDTQWASQADGLTK INPLAVNDNAHAKCKIVADDAYTQDEPKAGAAGIKHLPKGSTWTVFGRQDKYLIVGGGSD GKYVDGDKAVIVL >gi|313656766|gb|GL545251.1| GENE 419 439145 - 439636 277 163 aa, chain - ## HITS:1 COG:TM1044 KEGG:ns NR:ns ## COG: TM1044 COG0675 # Protein_GI_number: 15643802 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 3 151 235 370 405 85 37.0 3e-17 MQSKRYMKARNKLQAAYARAKNIQNDLMQKFTTKLVSEYDSIVIEDLSVKGMLMSHVASK GMHRSMFGRFRQILTYKCEWYGKKLIVANKLYPSTQRCAACGLVKKGDEKITLRGNKKHG TKHNEFVCYNPNCRNYNKKVDRDENAMLNLIILVKHPELNKAL >gi|313656766|gb|GL545251.1| GENE 420 440604 - 441659 607 351 aa, chain + ## HITS:1 COG:L57903 KEGG:ns NR:ns ## COG: L57903 COG0582 # Protein_GI_number: 15673214 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 345 1 356 356 253 40.0 3e-67 METKKYLTLIDQELNNLPSFIREYNLSTNHSLTTSYQYLTEIRRFFDWLRHQSLSPAQSN AEVSIKDLARLTRSDMMIYIDFLRHSKNQQGRLNSPTTVNRSINALRSLFKFLTITADKP FFDHNIMLKIQSLNNLETLNYRAHVLESHMYTGNLKYEFLEFLTNKYASLCNKQALASFK VNKERDIAIIALILGTGVRVSECASINLSDLNLKEATLDLTRKGGQKDSIPVASWTLPYI AAYADIRNKRYHAEKNDKAFFLTYYHKKTSRITPNGIERLVGKYSKAFGHPLTPHKLRHT LASELYGVTKDQVLVAQQLGQKGTTATDLYTHVDQKEQRKALDQLANNQNN >gi|313656766|gb|GL545251.1| GENE 421 441880 - 442248 310 122 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01143 NR:ns ## KEGG: LCRIS_01143 # Name: not_defined # Def: transcriptional regulator, xre family # Organism: L.crispatus # Pathway: not_defined # 1 116 1 118 119 109 52.0 4e-23 MDMCLGAVIRDRRKAMKLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMD TPSLIAAAYGKVDISNYKLKGDDIFIQKIVNELRKLSTFRAEKVCKAILSLVREINEPTR FN >gi|313656766|gb|GL545251.1| GENE 422 442283 - 443425 700 380 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01706 NR:ns ## KEGG: LCRIS_01706 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 3 377 27 421 423 193 31.0 1e-47 MNYYSRDNQLSQITNYLENPAKKGFAEYIVSDKAETINENDLKPFRNFLVKNPTETNSLI KAISHNKSYKNSIRLIKDGAYWLVFPRYKLNLPTYSLTVTTNHANSKLNINNSYKSMTKK DSKFAVSVNKLIVGQYNLTTQVKLSGRNLSTSKSINLFTNQTVKMDIKTLTFVVQSLPNA SIYINNKKVATLNNHGKATISNYPITNKTKIFVSYENDDSTIDSEVSSSLAVFAKKGQVT GNLQKKNGKYIYTPTWKGLVTSKEAKKLLAKAFSKKSSSVDFVNSTNNTDYKTLRKMFAG FNKDGKIKSYSTAIKITKVLPLGNNETQVSYEVTYKFKHKSDTRTQIMKYTNAILYKKGS KVSIQSVGGGHIISDKTKKN >gi|313656766|gb|GL545251.1| GENE 423 443931 - 444596 789 221 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854981|ref|ZP_04645310.1| ## NR: gi|238854981|ref|ZP_04645310.1| hypothetical protein LACJE0001_0488 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_1262 [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0488 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_1262 [Lactobacillus jensenii 208-1] # 1 221 1 221 221 328 100.0 2e-88 MENQPKENTKQAVSSISTWLKTAFTSPNKAIKGQAWFGIVTILVIELTSLLAKQSDYTAL QYLAATSAYFNALYGILTSKAWMIGVTLFGVIARLVYIAIIWFTHNFIYQSEKPVKLLDF INDYAHHIAISWVAVIVMAVLSYSTTEWTSIATMIFGFVAIWINVIATFKMLFSSREEAK HDPIFASFLFLLLFAILIALTFAFASLIISAYINTVGISIY >gi|313656766|gb|GL545251.1| GENE 424 444795 - 445262 678 155 aa, chain - ## HITS:1 COG:SPy1531 KEGG:ns NR:ns ## COG: SPy1531 COG0783 # Protein_GI_number: 15675430 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pyogenes M1 GAS # 2 153 24 175 175 178 54.0 4e-45 MKYQETKKVLNQLVADLNQMITVVHQTHWYMRGRGFMKLHPLMDKFMDDLNEQMDVISER LIAIDGAPFSTLREFADNTKIPDEKGRWDRTMDERLEILVKDYRYLADLYQKGIDVSDKE GDASSNDIFTGFKTDTEKRIWMLQAELGKAPEIDA >gi|313656766|gb|GL545251.1| GENE 425 445340 - 445585 315 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260664465|ref|ZP_05865317.1| ## NR: gi|260664465|ref|ZP_05865317.1| predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein LBJG_00936 [Lactobacillus jensenii 1153] hypothetical protein LBJG_00936 [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] # 1 81 10 90 90 147 100.0 2e-34 MKITELIQKVDDYCHNCSFFQGLDGQIDLIDYNNDYLTFDYIAPKKSTLAKLVYVVIARE DGEIFLISKNTYRKFAKKYKL >gi|313656766|gb|GL545251.1| GENE 426 445685 - 446566 668 293 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 283 4 280 283 206 39.0 4e-53 MKIALITDSTSYLTKEEVKDNNIIVVPIPVIVGDKEFKEGIDITADQLFRMQDAGAAFPK TSQPSMGEMISLFNRLHDEGYDAIITITLAGTISGFNQTLMNIARTNPEYNLYPYDSKIT IRLMGYLVLAAAKMIKNGLSAEEIITRLDEIRDSIDELFIVDDLNNLSRGGRLSNAGAFI GTMLHIKPLLTFDDDSDKIVAFDKVRSMKRAVKKVESLTLEKVNKLPFKQDLRFLVVHSN DATQAEEIKSWVNENFPENPVEVGEFGPVIGTHLGEKSIGITWMKDINKVKLN >gi|313656766|gb|GL545251.1| GENE 427 446640 - 447053 423 137 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01133 NR:ns ## KEGG: LCRIS_01133 # Name: not_defined # Def: L-fucose operon regulator # Organism: L.crispatus # Pathway: not_defined # 1 127 1 127 138 116 56.0 3e-25 MDVLHFNEIAESIKKMILEQAGLNLSQTRILLFFDENENDSLTMGELARGLNISLSTLSR QLQQKKTQEIIDVVRSETDSSKLVCLNETGVFKASELKHLLTSIHNKIYALWSETETKDF LTHLDSIQTELNKETIQ >gi|313656766|gb|GL545251.1| GENE 428 447340 - 447654 122 104 aa, chain + ## HITS:1 COG:SPy1013 KEGG:ns NR:ns ## COG: SPy1013 COG1293 # Protein_GI_number: 15675016 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Streptococcus pyogenes M1 GAS # 1 63 1 63 550 70 49.0 5e-13 MAFDGLFIHSLLTNLSPTLLTGRLTKIYQPFEHDLILVFRKNRKNYQLLLSINPQYPRFY LTKTLWIILKLPQHLLWFYGNILKARFCKILSKLVRIVLSIFFF >gi|313656766|gb|GL545251.1| GENE 429 447704 - 449038 1472 444 aa, chain + ## HITS:1 COG:lin1943 KEGG:ns NR:ns ## COG: lin1943 COG1293 # Protein_GI_number: 16801009 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Listeria innocua # 1 435 123 567 570 293 40.0 3e-79 MGRHSNVILYNKQDGKIIDLLKRVNPDENRARLLLPKAKYELPPLNPGIDGFLLSKEEFS KLAKENTPFDFAKKVNGLDRDDRLELAGYLEDDYSFDSFKTFFNHFDNPKGYIFRNNKRK EKIFVYQPYHLDLTPYSKNEDINQALDEFYHEQETRDWVHQRAKVVLNIVSNEQKKLSKK LIKLNNQLDQAENSEDYRIKGELLNAYLHLVKAGMTEVEVPNYYDENRPLKVHLDPALSP ARNAQKYFTKYQKLRNSIKHVKEQIKLTQENLTYFDSIETAINNAEPEDIDSITDELVAQ GYIRRNRKQRNKKIDEKSLNKFKLSSGKIVLVGKNNYQNDWLTFKKANKNDIWFHVKNIP GSHVILTDSQPSEEDIRETAEIAAYFSKGRLSGHVQVDYVADKRVKKPNGAKPGFVIYTG QNSIEVTPEEKSVLSKRIDKSTVK >gi|313656766|gb|GL545251.1| GENE 430 449095 - 449700 913 201 aa, chain - ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 8 200 1 194 194 240 62.0 1e-63 MSDNKQKMIFPQLDLAAAEGPTATMKTNKGDIKIQLFEKQAPMTVENFVRLAEKGYYDGV IFHRVIKDFMIQGGDPKGDGTGGESIWGHPFEDEFSSQLFNFRGALSMANSGPSTNGSQF FIVQNQNMPKRYTRDMREAGYPQEVIKRYKQGGTPWLDFHHTVFGQVIDGMDVVDAIAKV ATNNMDKPNDDVVIEGITVEK >gi|313656766|gb|GL545251.1| GENE 431 449764 - 450699 1182 311 aa, chain - ## HITS:1 COG:SP1534 KEGG:ns NR:ns ## COG: SP1534 COG1227 # Protein_GI_number: 15901378 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 309 1 309 311 331 57.0 1e-90 MAKELIFGHQNPDTDAIGTAIAYSYFQNHFGFDTEAVALGEPNDETAFALKKFGFEAPRV IKTAANEVDAVMLVDHNEPQQSVSDIDKVTVTHVVDHHRIMNFNTAAPLYFRDEPVGCTS TVLWQMFNEKGLEIPQNIAGIMLSAIISDTLLLKSPTTTDKDHEAVEALAKIAGVDYKSY GLEMLKAGTNIADKSEEDLIDLDAKSFELNGHTVRIAQVNTVDLPEAMERKAAFIGAMEA SSKANSYDMFVLVLTDILESNSEGIVVGSDETKSLFEKAFDKKLVDSAVELPGVVSRKKQ VVPPLTEAFEG >gi|313656766|gb|GL545251.1| GENE 432 450766 - 453246 2616 826 aa, chain - ## HITS:1 COG:SPy0910 KEGG:ns NR:ns ## COG: SPy0910 COG0188 # Protein_GI_number: 15674931 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 8 805 4 812 819 819 53.0 0 MAQKTERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTYD KPFKKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAM RYTESRLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYAT EIPPHNLAEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVLGDKGIKEAYETGRGRI QVRSKTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGL SIVIELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDHMTPVQVGLKRILSSYLEHDEAV ITKRTQYDLKKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIEKFSFTPRQA EAIVSLQLYRLTNTDVNALQAEKSDLEEKIANYNLLLTDRKVLEKQIIKELNAVKKEFGS DRRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYLKRSSLRSFQSTDDSENGLPDFDKV VFEKTMSTLTNLYLFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQIVSVFELA KLDEKLNFVLATNDGYIKQLALADIQPTRTYKSRAMIAMKLKQDTSRVIHVEGVVPDTKK EITLFTNQAYAVRYDISEIPTSGARAAGVKSVNLKDDDYVVDYVTVDPKYLNLMKLGIIT QRGAFKEFKYELINKVSRAKRGVLVLRELKKNPHRISGVALFGQNHELIIETSSARTMTI KTNDFPLGDRYSNGSFVIDPVGDGEPTSLTLGKPTHAGRDDISELF >gi|313656766|gb|GL545251.1| GENE 433 453259 - 453783 746 174 aa, chain - ## HITS:1 COG:BS_grlB KEGG:ns NR:ns ## COG: BS_grlB COG0187 # Protein_GI_number: 16078870 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Bacillus subtilis # 1 174 447 620 627 267 72.0 7e-72 MIHTIGAGVGAEFKIEDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGRVYIA LPPLYRLQKGSGAKAKIEYAWTDEELERDEKAMGKGYSLQRFKGLGEMNADQLWQTTMNP DSRMLIRVKIDDAALAERRVTTLMGDKVEVRRKWIEQNVKFRMGEEGSILEAEN >gi|313656766|gb|GL545251.1| GENE 434 454241 - 455200 1161 319 aa, chain - ## HITS:1 COG:SP0852 KEGG:ns NR:ns ## COG: SP0852 COG0187 # Protein_GI_number: 15900737 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Streptococcus pneumoniae TIGR4 # 5 309 9 313 647 377 61.0 1e-104 MAKANSYDDSSIQILHGLEAVRKRPGMYIGSTDIKGINQLVYEIVDNSVDEAMAGYGKEI NVTIHEDNSVTVQDFGRGMPTGMHESGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVGS SVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGTLKHLGKTNDKTGTTITFKPDERVFST TKYKYETIEERIRESAFLLKGVKFTLKDERTPNHYEEFLYTDGIKSFVSYLNEGKDTFGD VFYFEGKQDSIEIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSGFTRAFNDYAKK QGLLKEKRRISKVVTIVKV >gi|313656766|gb|GL545251.1| GENE 435 455285 - 455905 437 206 aa, chain + ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 8 199 5 204 213 158 52.0 6e-39 MLTIKIALLLILAYLLGSFPTGVIVGKVFFHKDIRKLGSGNPGSTNTFRTFGPVAGMSVL LVDVLKGTLATLLPVIFHLGPHPLGIIFGMLAILGHTFSIFLGFKGGKAVATTAGFILGY NLAFFCVCAGIFFPMLFITSIMSLTAMLCITLFFIFSFLFHDPYLSAMMFVLLILIFIRH KANIVRLKNGTENIIPFGIYYWLKNK >gi|313656766|gb|GL545251.1| GENE 436 456067 - 456855 856 262 aa, chain - ## HITS:1 COG:L183012 KEGG:ns NR:ns ## COG: L183012 COG2017 # Protein_GI_number: 15673903 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Lactococcus lactis # 1 222 1 218 235 169 39.0 5e-42 MEYEIKNQFLNVKINSRGAELASVKSVNSDTEFLWQADPEVWNRHAPILFPIVGRLKNDT YQYQGKSYQLSQHGFARDKEFKLLSQENDAISLVLRDDEASLKEYPFHFELVITYRLLNN LLIEDLSVKNPSNEEMYFSIGCHPGFNIPVNDQLKKNNYYLQMFPSKDHIRIPISKETGL HDWAKRTIAATDTPIELNDELFKDDALVFELKEATKLSLRSEKLAIISMSQPKIAHLLEF GHNILKQLTMSALNLGGDFAMI >gi|313656766|gb|GL545251.1| GENE 437 456869 - 458251 1265 460 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 5 460 9 466 466 491 56 1e-137 MSIKTPKEIVRLLNEYIIGQDEAKRAVAIALYNRYRRLQLPKSLQQDITPKNMLMAGPTG VGKTEIARRLAKIVDAPFIKVEATKFTEVGYVGRDVESMVRDLVTEAVRMEEKEQFKRVK ADATKEANKTLVRLLVPGIKHENRENQMQQMMQMLMGFQQAQQPQEEVTDDIRNQRLSVA EQLNKGLLEDRQVTIEVEQAPKVNPMSDMMGQMGMDMNSLLGDMMPKKKVKRTLAVRDAR EVLIQEQSRKMVDYDTIYQKAIERTSQNGIIFIDEIDKITGKSKEAGQVSREGVQRDILP IVEGSTVQTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKADFVSI LKDPENSLLKQYIALLEADGVKLIFTQEAIDKIAEIAYDVNQGTDNIGARRLATILEKLL EDVLYEGPDMEMGEITITQAYVEEKLSDIIMNKDLTKFIL >gi|313656766|gb|GL545251.1| GENE 438 458252 - 458782 832 176 aa, chain - ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 2 174 6 179 179 178 54.0 6e-45 MTTIVSVKHNGKTAIAGDGQVTLGEKYISKKSAKKIRRIYNNQVVIGFAGGVADAVSLEE MLEGKLESYSGDLRRAAVEMAQSWRKDPTLQKLQAMLIAFNEKDLLLISGNGEVLEPDEN VVAIGSGGYFAQAAAVAMTRHAKEMDASEIAKEAVGIAADIDVFTDHEIITDEIGD >gi|313656766|gb|GL545251.1| GENE 439 458785 - 459693 930 302 aa, chain - ## HITS:1 COG:BS_codV KEGG:ns NR:ns ## COG: BS_codV COG4974 # Protein_GI_number: 16078677 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 4 297 5 299 304 249 42.0 3e-66 MTKKSLLEQFKDYLAYERGYSNLTLTAYLNDLKQAEDFWKNNGGFNGFKQVTSRDIEIYI ASLASTGLSQASQARKLSSLKSFYKFLTRRNLVEVDPTQTVSIHRKSKKLPEFFYEPEIK KVLDSLSASDKLTVRNKAMFELFYATGMRVSEVSNLTLEQIDFDVQMILVHGKGNKDRYV PFGDYAKACLLRYLNEARRLFNPDDDNHYVFLDNRGHQLTSRGIEYIMRKVFQKGGLSAN VHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMERLQKDYEKFFPRNKG KD >gi|313656766|gb|GL545251.1| GENE 440 459686 - 460123 524 145 aa, chain - ## HITS:1 COG:BH2466 KEGG:ns NR:ns ## COG: BH2466 COG1206 # Protein_GI_number: 15615029 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Bacillus halodurans # 1 141 295 435 435 182 60.0 2e-46 MIPGLENARFVRYGKMHRNTYMASPDVLNATYEAKKQAGLFFAGQMTGVEGYVESAGSGL VAGINASRLAQGKDLVTFPVETALGSMANYITTTSSKHFQPMNASFSLIPPLEKKIRNKR ERKQMISERGLEKLAEFAEEMKIND >gi|313656766|gb|GL545251.1| GENE 441 460120 - 461004 970 294 aa, chain - ## HITS:1 COG:SA1094 KEGG:ns NR:ns ## COG: SA1094 COG1206 # Protein_GI_number: 15926834 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Staphylococcus aureus N315 # 1 284 1 283 435 386 64.0 1e-107 MTQKVTVIGGGLAGSEASYQLAKRGVEVHLYEMRPVKMTPAHETGNLAELVCTNSMRSDQ LTNAVGLLKEEMRRLDSLVLRAADATKVPAGGALAVDRELFSKYITEELAKFDNLHIHHE EITKIPSEGITIIATGPLTSDDLAKQIKDFSGTDSLHFFDAAAPIVASDSIDMDIVYKKS RYDRGEAAYLNCPMDKEQFTKFWKELVKAETAELHGFEKDEVFEGCMPIEVMAARGEKTM LFGPLKPVGLEDPKTGKTPYAVVQLRQDNAASSMYNLVGFKLTLNMVNKSVSFQ >gi|313656766|gb|GL545251.1| GENE 442 461104 - 463191 1958 695 aa, chain - ## HITS:1 COG:L0298_1 KEGG:ns NR:ns ## COG: L0298_1 COG0550 # Protein_GI_number: 15673212 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Lactococcus lactis # 3 572 23 589 589 703 63.0 0 MPTRKKNLVIVESPAKAKTIEKYLGRSYHVIASKGHIRDLPKSQMGVDIEHDYQPKYISI RGKGETIKELKKEAKKAKFVYLASDPDREGEAIAWHVAHILDLNDGQKHRVTFHEVTKDA VKNAFKNPRTIDMDTVDAQQARRVLDRLVGYSLSPILWAKVKKGLSAGRVQSVALKLVLD REQEIKDFKPEEYWTIDAEFIKGKKKFQASFYGLDGKKVELPNNEAVQSVLKKIDKKKPF TVENVVKKERKRQAPAPFTTSTLQQEANKRLGFRTRRTMSIAQGLYEGISLGKEGTVGLI TYMRTDSKRTSPVAQAEASKFLTETFGSEYASKSARHFKNQEDAQDAHEAIRPTSIYRTP ESLKNSLTSEQYKLYKLIWSRFAASEMTPAVFDTVRADIVQNGVMYRTTGSKMKFAGFTK VYDAGSDKSVELPDLAEGDSVKLSKQDNKQHFTMPPARYTEASLVRALEENGVGRPSTYA PTIDTIQRRYYVKLEGRAIVPTELGEIVNNLVGKFFPDIVNVDFTAQLENDLDHVEEGKK NWVKVVDEYYKPFSKELEKADSEIEKVQIKDEPAGFNCDICGAPMVIKMGRYGKFYACSR FPDCRNTKAIVKEIGVICPKCGKGQIVEKKSKRGRKFFGCSNYPDCDFVSWDKPVGRDCP NDGHFLVEKKTKKGPVVQCPNGDYKEEREENESSK >gi|313656766|gb|GL545251.1| GENE 443 463354 - 464196 606 280 aa, chain - ## HITS:1 COG:TM0250 KEGG:ns NR:ns ## COG: TM0250 COG0758 # Protein_GI_number: 15643022 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Thermotoga maritima # 71 273 63 265 337 191 47.0 1e-48 MTIKEFLLRLKLERGIGYQKSLAILTKLLSLSEVTLADLEKLPEEIKNLAIKAYSNPKHP QTISLLTKQCQIISFFDNEYPDKLRQIFKPPLLLFAKGDISLLKRPITTIVGARQATNYT QQALDLWMPRLSQDFVIASGLAKGADRLAHEAALRHHGKTIAVVGNGLNHFYPEENRNLQ FEIIKNGLLISEYLPDTPPRPFRFPERNRILAGLSDNVIVTEAKSKSGSLITANYALYEN RNIFALPGSVFSPLSQGPNELIKAGACPLLDLETFYDNIH >gi|313656766|gb|GL545251.1| GENE 444 464268 - 465197 455 309 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855694|ref|ZP_04645991.1| ## NR: gi|238855694|ref|ZP_04645991.1| putative cell surface protein [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00951 [Lactobacillus jensenii 1153] putative cell surface protein [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00951 [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 309 1 309 309 486 100.0 1e-136 MFFNSTVVLAETTDSTESIKNQTLTANRKIYAKVDGDEDFQLVHQDRANLTYDEKVSFEN NQRKVTLDKEVSSEWPSYTIPKKEGYTAYLVDENGQKEESLTDGTISKSEITLTSLDNTN LDRNYYVIYYPDEHTLSVEYIDKTTNQILSEDSYSGKSGEEISLNITNPDKSKYTIDNNI IPSSYTFTGASNQTVKIYLKNKSGKSGKTNNEKKKENLIKRPDIPNTNNIEQSKANNNLP NTYLNDNNKSTSLFTNSNRERVPKDKNNRQYLAFEKAGSKLTQWLLVALGIVIVVASVFI SKIKFNSEV >gi|313656766|gb|GL545251.1| GENE 445 465706 - 466134 353 142 aa, chain + ## HITS:1 COG:L67527 KEGG:ns NR:ns ## COG: L67527 COG0454 # Protein_GI_number: 15673798 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 1 142 1 146 147 82 38.0 2e-16 MLIQTTTDITSALYQKILSLRKEVFVKEQNVPANLELENEQGPIYYGGVIDDTVVCCARV IEEDNKTWHIQRVATKKPFRGQGLNSQLFKKIEQDAKNNGIDRLILGAQDQAQGFYLHLG FKVVGDAFIDAGITHHMMEKKI >gi|313656766|gb|GL545251.1| GENE 446 466183 - 466941 652 252 aa, chain - ## HITS:1 COG:BS_rnh KEGG:ns NR:ns ## COG: BS_rnh COG0164 # Protein_GI_number: 16078669 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Bacillus subtilis # 1 248 4 254 255 224 48.0 1e-58 MSIKEIKEILQGEVDSETLALLQKDERKGVQKLLESYNKRLAKLAKAKAAFMNRFQYEQK AWAAGSIVAGVDEVGRGPLAGPVVTAAVVLDDSFDLVEVNDSKKLSPKKRLELYPRILDK AVAVGIGVGSPELIDKINIYEADRVAMAQAVNNLALRPDLLLVDAMNVPVDIKQIELIKG DSKSNSIAAASIVAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHLAALKEFGATPIHRR SFSPVSEYDFNK >gi|313656766|gb|GL545251.1| GENE 447 466938 - 467780 972 280 aa, chain - ## HITS:1 COG:L128951 KEGG:ns NR:ns ## COG: L128951 COG1161 # Protein_GI_number: 15673276 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Lactococcus lactis # 1 278 1 277 282 261 43.0 1e-69 MAIQWYPGHMNKARVQLEDKLSLLDVIVEVVDARIPASSRNPLISDIVGDKPHIIILNKA DLADPNEINKWEAKLKSDGKFVLKLDAQHNTNMTPLFKLIKLAAKERIDKLEAKGASNPT IRICLVGIPNCGKSTIINRLVGRNVAIVGDRPGVTKGQSWLKTSESVQILDTPGILWPKF EDQAVGFRLAALGSIKESVFHADDVALFVMEYLKENYFKSLVKFSRLTEQEVTDLPLPEL LLAMTEKYGMRDDYEKMSLFLLNQLRKGRLGRINLEKVEA >gi|313656766|gb|GL545251.1| GENE 448 467901 - 468485 490 194 aa, chain - ## HITS:1 COG:no KEGG:LBA0977 NR:ns ## KEGG: LBA0977 # Name: not_defined # Def: Na+-H+ antiporter # Organism: L.acidophilus # Pathway: not_defined # 7 193 345 531 533 220 55.0 3e-56 MTEFRHNQKKAWTFSLGGVHGAVTFALAYTLTEETIKLSDIHFALLASSTLIILSMVVPT IVFRFLLPKKVADLDQIKEMRKVRKDMVEYAMLELDKIYLPEALRRQLLYDLKAQLDEVS MKDFLKEMNTTVRRPDLKPHDREFRDEVYRYAFRLERNYLGQIAQSEQKYREGFLKLYRE TLMAEILFLGTKED >gi|313656766|gb|GL545251.1| GENE 449 468666 - 469844 1093 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 450 469973 - 470860 299 295 aa, chain - ## HITS:1 COG:SA2228 KEGG:ns NR:ns ## COG: SA2228 COG0025 # Protein_GI_number: 15928018 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Staphylococcus aureus N315 # 1 266 1 259 692 130 30.0 4e-30 MDILISTLVILFTTNLAMVFQKAYFHKISVNYVALFFGMILGLVPLLNNLVEDFQSEVFM ELIVAPLLFFEGQNTQLYYVKRFWKSIVGLTVVMIVIIELVAGFSLYYLTGMNMAFCFLL AAIATPTDATAGESVTHGLKVPRKVVYYLRNESLFNDASGLVLLAMMVSWYVNKNLVIIK SISQLFIAVIGGIALGIISSLLLAMIRQRTMQSSSLEDSSFSLNTPVQIAYLMTPFLLYF LAEEIHVSGVITVVVAGLVHNAEHQRSKLTNPQMVFVDIGVSKLIYFLYKYRRRF >gi|313656766|gb|GL545251.1| GENE 451 470907 - 471131 344 74 aa, chain - ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 70 4 68 77 67 58.0 5e-12 MAYRESFYRFLMTQRNPDSHDEIAEFANNAQHDQQFPKQEQDYEKLSDYLELNASYLPSM TIFDRAYELYKDNM >gi|313656766|gb|GL545251.1| GENE 452 471237 - 472079 929 280 aa, chain - ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 276 1 274 279 199 40.0 4e-51 MPNIKVITDSSVQLSPEEIEKYGITVVPLSITIDDKTYVDGEDITRKDFIQKMDNAKELP KTSQPAIGRFVDEFKKLAADGSQVLGIFMAKCLSGTVDAARQASELVDFDVTIFDSGYTD RAMGFEVLEAAKMAQADKNLDEIIARLKQMQEQMHLEMMVPDLTNIIKGGRLGALAGRVA TLLNIRLFLEMTTNVLNIKAKGRGKKFTKKFNQDLIEQVKNTPNIKHLGISYVDTPDDME DLANELKKVNPNMDILVQETSPIIITHAGHGAYAVMFYSE >gi|313656766|gb|GL545251.1| GENE 453 472227 - 472463 199 78 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_04900 NR:ns ## KEGG: LAC30SC_04900 # Name: not_defined # Def: hemolysin III # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 72 1 72 215 84 55.0 1e-15 MNFKKIWQKPKHQPKVLPLLDNIFSAVTHGIGFGLAVTALVLLIIRAVGTHSPLRVVTFT IYGSSLIFYIYFQRSTIL >gi|313656766|gb|GL545251.1| GENE 454 472681 - 472890 224 69 aa, chain + ## HITS:1 COG:lin1978 KEGG:ns NR:ns ## COG: lin1978 COG1272 # Protein_GI_number: 16801044 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Listeria innocua # 1 69 142 210 210 65 57.0 2e-11 MGWLVIFSAPHLYHYLGTTGFWLLVAGGISYTVGTLFYSMIGVPMMHTVWHLFVLAGSIL MFFSILLYV >gi|313656766|gb|GL545251.1| GENE 455 473154 - 474344 1310 396 aa, chain - ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 6 396 1 392 394 330 45.0 2e-90 MKINSLPEIFIKALPVVQTLTKAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPEEVKQL FERSIDTGIQHGTVTVLYDDDSYEITTFRTESGYQDYRRPDHVEFVQNLEEDLKRRDFTI NALAMDEYGNIHDLFNGLDDLKNGLIKAVGNPERRFNEDALRMMRAVRFMSQLKFSLEEN TRQAICDHHELLSKISVERIREEFVKMCVGPHARSAFQVFLDTQLSEEVPDFRGKKEQLS VFPSLTFSPSTEASVWAIIAILLKLPNEQIPKFMRDWKNSNQMTRKVEEIVFFFDLLSDH SPSDYELFLAGQDTVMSACDVARILGQPVNSEALVDRYVALPIKNHKELVVDGSTLIEWG IKPGPSLGDMLAKITEAVVDGKIANDEEAIKNFIVE >gi|313656766|gb|GL545251.1| GENE 456 474430 - 475335 711 301 aa, chain + ## HITS:1 COG:lin2023 KEGG:ns NR:ns ## COG: lin2023 COG1284 # Protein_GI_number: 16801089 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 18 298 10 288 288 229 43.0 6e-60 MKVIKPKFPITPSFIIELIMIALGSAIYGLSINMISIPNQLTDGGLSGISLLLFHWWKVN LGFSTIILNIPLILIGFRFLGKKLMIETLWGTICLAFFLNFWRLIPIINQLNLEHDLLLA AISAGLLSGLGLGIVFRYNGTTGGSDIIARILQQEKDIKSGKTFFIIDVIVLVLSLSYID IRHIMYTLIASYIATTLIDIVQQGGNKAKAVFIISDKYEEIAKMIDLELDRGFSFLNGEG GFDRSQKHIIYCIVANYEIQAVKAIVLREDPKAFMTIFDANEALGEGMSYNRKKRNFFIR R >gi|313656766|gb|GL545251.1| GENE 457 476207 - 477385 1084 392 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVIGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 458 477510 - 477659 98 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313472162|ref|ZP_07812654.1| ## NR: gi|313472162|ref|ZP_07812654.1| hypothetical protein LBJG_01623 [Lactobacillus jensenii 1153] hypothetical protein LBJG_01623 [Lactobacillus jensenii 1153] # 1 49 1 49 49 67 100.0 2e-10 MTFPIFVPFLPMMDERHVFLKRLLFFKYTIGFWKGSILMSDLYLHKFSF >gi|313656766|gb|GL545251.1| GENE 459 477696 - 479330 2422 544 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313472163|ref|ZP_07812655.1| ## NR: gi|313472163|ref|ZP_07812655.1| LPXTG cell wall surface anchor family protein [Lactobacillus jensenii 1153] LPXTG cell wall surface anchor family protein [Lactobacillus jensenii 1153] # 1 169 1 169 544 337 100.0 2e-90 MYRIGTQKQWIPAQYTNWDDGSSRKQNVNAVTIKYVPGYGINLWKTPASKEWTGRRLPHN SSWKVFGTAVGDDGYVWYNLGGDQWIPSRYTNKPIKAAASDSNVVTIKYVPGYGINLWKT PASKEWTGRRLAHNSSWRVYKTAVGDDGYIWYNLGGDQWIPSRYTNRPVKASSSATSSQS SKASSSSASSAASSQSSKASSSSVSSAASSQSSKASSSSASSAASSQSSKASSSSVSSAA SSQSSKASSSSVSSAASSQSSKASSSSASSAASSQSSKASSSSASSAASSQSSKASSSSA SSAVSSQSSKASSSSASSAASSQSSRASSSSASSAASSQSSKASSSSASSAVSSQSSKAS SSSASSASASQSGSSSENSGFTSNNGIWTDSERQEAEQYFVQLVNEWNAKQGNTVPFVIN SEKQSLAEFRAQQNIESIEKTGDIDDHMPNGVPFLNQPEFKNSKVPVVTEVQGMQGSASG MTPKEFVDAAFDAFIYRDGPSWQHRESLRSGTKEELEVDSLPFGVGIKQVRHNGMIINVI DALI >gi|313656766|gb|GL545251.1| GENE 460 479358 - 479591 422 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260664439|ref|ZP_05865291.1| ## NR: gi|260664439|ref|ZP_05865291.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] # 1 77 1 77 269 139 100.0 5e-32 MNNKEAAKLVASAMGAAILAGVIGSNNTNQKVEAATNNQQVRGVLRVKYNGLGGVNLLDN NGHFQDKYVYNNSAFKV >gi|313656766|gb|GL545251.1| GENE 461 479778 - 480221 448 147 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854619|ref|ZP_04644949.1| ## NR: gi|238854619|ref|ZP_04644949.1| hypothetical protein LACJE0001_0581 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_0581 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 147 1 147 147 274 100.0 1e-72 MNHNFDSLSKEIKKLEFGKDIIKKALSDVEVKDVNRLEFELGDEVTTYSILESNGNETTV IISTENCSDLGRKSREYLAGLDAEIIDNGGIPMDLKKTYIIFLSKNDPFNQGRSKYVFRP RSDEDKSIVLPWGPVIVVMTYDELKKN >gi|313656766|gb|GL545251.1| GENE 462 480259 - 481446 1280 395 aa, chain - ## HITS:1 COG:BH2510 KEGG:ns NR:ns ## COG: BH2510 COG0452 # Protein_GI_number: 15615073 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Bacillus halodurans # 3 395 6 397 404 291 42.0 1e-78 MARIAVYLTGGIAVYKAVSVVRNLQKRGHQVRVVMTQNAEKFVTSQTLAALTKEEVLDDL WGKENEARIPHIELADWSELALVVPATANFLAKMAWGLADDAASTTILASSCPKIVVPAM NNHMLANPAVARNLAQLKADGVMVLEPKVGMLAEGYQGKGRMPEPDEITDYVCEKLSPQN TLRGKRVIVTAGGTREAVDPVRYLGNRSSGKMGIAIADEFAKAGAQVDLVIGNIDIAIPN NELIKVYQVTSTEDMLAQVEKLFSASDCLVMAAAPADFKLKNSINQKIKKKPGQTDLVLE LTQTPDILKTMGKRKDQQIVVGFAAETENLLVNAQAKLERKHADMIVANDVSSGVFGSDK NQVYILQKGLEPVSWPEMTKKGIAKRLVNLIGKKM >gi|313656766|gb|GL545251.1| GENE 463 481434 - 482039 541 201 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01101 NR:ns ## KEGG: LCRIS_01101 # Name: not_defined # Def: phosphohydrolase # Organism: L.crispatus # Pathway: not_defined # 1 195 209 408 408 132 38.0 7e-30 MHHNLYRHNAVIYHNFVLDNASQVKRLFNKYNVQAVFSGHIHAQSIKKEADCSAYEVVTS CFSSTDQGYGEISLNDEQLCYTRHSFNMDDYLAPAEKHGHLNNYRQYLGDLFEQNNRYHL RYLDNMELVDEEKAKIARFLGDMHWDYFVGKGGMTKEQIINSEEYRRSIEVRPKLKGYID SLIVDSDNWNLKINWKNKWLE >gi|313656766|gb|GL545251.1| GENE 464 481985 - 482677 455 230 aa, chain - ## HITS:1 COG:lin2791 KEGG:ns NR:ns ## COG: lin2791 COG1409 # Protein_GI_number: 16801852 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Listeria innocua # 18 197 46 225 443 122 38.0 6e-28 MLKNLLTQKENPKIWVISDTHLIANELHDKGWAFQKMQNTSVGKDLHYQQKALLAFTRKV LKEKPDVVVVTGDITFNGERLSMQRFAEIFAPLKRHGIKLLVLPGNHDIYDGWARKFKDD VQYRTDQVSPQDFKEIFYDSSYRYAAREDGSSLAYSVNLSPRYRLILADSNIYPMEYSLT HPHTHGQIDDEELALLKVKSLKQNLITNMCCFSCTIIYTGTMQSFITILF >gi|313656766|gb|GL545251.1| GENE 465 482697 - 483824 1046 375 aa, chain - ## HITS:1 COG:SP0373 KEGG:ns NR:ns ## COG: SP0373 COG0116 # Protein_GI_number: 15900296 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Streptococcus pneumoniae TIGR4 # 1 374 1 378 385 374 48.0 1e-103 MTEKYTLYATMGAGFESTVSKELQKLGYQTRTENGRVFFEGGQEDIVKTNLWLRSADRVK ILLKEFKAVSFEQLYDQVFDYDWALLLPVDAAFPVQGRAVRSKLHSEPDVQSIVKKAIVD KMVKQYHRRGFLPETGNAFPLDIHIYKDVARLSLDTTGASLFKRGYRVEHGGAPLKETFA AGLLELTPFNGTHPLIDPMCGSGTLPIEAALLAKNIAPGMKREFSFDGFDWFDKSLHQAG VEQAQAQIKPLESTIWASDIDQSVLEYAKLNAHNAGVLQDIKFKQVAVKDFKTDLENGII ISNPPYGKRLKDRDGAHKLYEEMGQVLGSYKDFSQYYLTSDPEFEKYFGQKATKKRKLFN GNLRVDFYQFWANKR >gi|313656766|gb|GL545251.1| GENE 466 484296 - 484706 462 136 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0909 NR:ns ## KEGG: LDBND_0909 # Name: not_defined # Def: cell division initiation protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 135 1 151 154 127 54.0 1e-28 MADLKDIKLSSQDILKKQFAHKMKGYDQEEVDKFLDQIISDYETYNSIIEDLYGKIGKLQ RELLESQRTAKESAEPATPVSAPVDDVKTYTPKTRPVQTQVPTNEISTNMELIQRVSTLE RKVYNLEQRVFGMQNQ >gi|313656766|gb|GL545251.1| GENE 467 484806 - 485372 542 188 aa, chain - ## HITS:1 COG:lin2003 KEGG:ns NR:ns ## COG: lin2003 COG4474 # Protein_GI_number: 16801069 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 177 1 176 181 128 36.0 5e-30 MKRVWVTGYRSYELGVFNKKDPKIKVIKYCLKNHLQALLENDELDWVISGAQLGVEQWAL EAALDLQQDYPVNVSMMVPYQEFANRWNEDNQNHYLTLKEQVDFFGATSNSPYQSPVQLR NYQNFMIQHTDSAIMIYDPEHPGKPKYDFELIQKYQEEKDYDLDLIDFYSLEDAANEYAE AHRPDYFG >gi|313656766|gb|GL545251.1| GENE 468 485526 - 486146 224 206 aa, chain + ## HITS:1 COG:L131245 KEGG:ns NR:ns ## COG: L131245 COG3331 # Protein_GI_number: 15672526 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Lactococcus lactis # 1 199 1 209 213 195 49.0 6e-50 MVNYPSGSSARLTGQDFHRPKQTKRAKKEISFSDRGMTLEEQINESNKYYLEKDLCVVHK KPTPIQIVKVDYPKRSKAVIREAYFRQASTTDYNGVYKGYYLDFEAKETKNHRSFPLKNF HDHQIIHLSRCLKQNGICFTIIRFSSLGRYFIVPASFVINAYKDPTKSSITLQEIETVSY EIQSGFRPTLPYLEAVDKFIADRSKS >gi|313656766|gb|GL545251.1| GENE 469 486147 - 488474 2186 775 aa, chain + ## HITS:1 COG:lin2006 KEGG:ns NR:ns ## COG: lin2006 COG0744 # Protein_GI_number: 16801072 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 7 687 8 687 826 473 43.0 1e-133 MAENNHRSASNTAPKNSRMANLHHDSGQPKRRLWLQILKWFSIGILLILVSGVGLFAYYA KDAPSISQDQLQSGGSSSFYTSDGKFLLSLGSEKRTYVKNSDIPQTLKDAVVSVEDKRFY QENLGIDPIRIVGSIVSNAKSSGIAAGGSSITQQLVKLTVFSTAASQRTLKRKAQEAWLA IRVEHDYTKNQILEYYINKVYMNYGVYGMGTAADYYYGKSLKDLDLAQTALIAGMPNAPV AYDPYTYPKAAKYRRDIVLNAMYANGKISKAQLKAAKAESITQGLKTQQNSSESSIRKID DPYIKEAISEVKSKGYDPYNDNLKITLNIDQDAQNKLYELANGSSIPFSSSKMQVGATII NPSNGHVVAIIGGRNLPSVQLGLDRAVQTGRSTGSSIKPVLDYAPAIEYLNWSTAHYLED TKYVYPGTSIQLYDWDNKYMGKMTMRYALEQSRNVPAVKTLAKVGMKKASLFAKKMNISV GSNQGLSVAIGANASSLQMAGAYAAFANEGVYYKPQFVSQIETADGVVHSYSATGTRVMK KSTAYMITDMLKGVLTEGSGTNARTGLYEAGKTGTVKYSDDELVKYPSYANTPKDAWFVG YTKKYSIGIWTGYDNLSDGTISGQGQYASQYLYKYMMKYLMSDKENSNWTKPSNVVRKRI VKGSDPLEVTSSKKNSTSELFLRGHTPDGSNEDSDESSSSSNSSSSSKDNEVVTNKSSSS SSSSSSEGHEDGSTSNSSSSQSSSGGSPNNNQGTTTNNQTNNNNNTGQNNGGGNN >gi|313656766|gb|GL545251.1| GENE 470 488659 - 489417 623 252 aa, chain - ## HITS:1 COG:alr1528 KEGG:ns NR:ns ## COG: alr1528 COG2746 # Protein_GI_number: 17229020 # Func_class: V Defense mechanisms # Function: Aminoglycoside N3'-acetyltransferase # Organism: Nostoc sp. PCC 7120 # 11 245 33 264 274 154 36.0 2e-37 MLIPHVAKTDSCIVHTSLSAFGYIPGGERTIVKALKDIFSEGNIVMAAQTADLSDPAEWG EPPATEQAQMIIKENMVPFDKNETPIHYIGKTPEYFRTSDGVKRTNHPLYSMCAWGRDAD HICRNRKYDMPFDWDSPLGDLYKLDAKVIMLGTDYESCTALHLADSTIDRPLLEETAPVK NEKGEREWITFKNVDELDKYDDFNEFGTYFEEHYPEAIVKIPIYKGFVRIIQMRQLVDSA QIYYRKKDLQNK >gi|313656766|gb|GL545251.1| GENE 471 489482 - 490123 759 213 aa, chain - ## HITS:1 COG:L0253 KEGG:ns NR:ns ## COG: L0253 COG0177 # Protein_GI_number: 15673053 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Lactococcus lactis # 11 202 1 195 218 199 50.0 3e-51 MTTVKNNNEQLLNDEEALKVLNQILAMYPDAKGELNWDTVFHLVCAVAISAQTTDKMVNR VTPKLFSDYPTPAAMAKADIKDLEADISKIGLFRSKAKHLKEMAQMLVENFGGEVPKDKK LLMTLPGVGEKTANVVLAEAYGVPAIAVDTHVARISKKFKIVPENAKPHEIEKRLEEILP KEQWIKTHHAMIFFGRYTMPARAKDPNPYNYLK >gi|313656766|gb|GL545251.1| GENE 472 490123 - 490758 543 211 aa, chain - ## HITS:1 COG:BH1697 KEGG:ns NR:ns ## COG: BH1697 COG3935 # Protein_GI_number: 15614260 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus halodurans # 11 207 13 202 233 119 32.0 3e-27 MKSFFNYRSFGFTTLTNALLASYSKLGLSDSAFLVIIQLESFAQDKNLLPSENEIAARTN MTPGAVSTLLQNLLENDYLELVQNRDEQGLINNEYSLEPLYIKLDQYLQDHYIETKTNSG KQEIDTSTNPVNELARQFEIEFGRLLSPIEREEISAWLTVDHYDPEVIKLALREAILSQV YNFKYVDRILLNWQKMGLKTPNDVTTYLGDR >gi|313656766|gb|GL545251.1| GENE 473 490824 - 492122 1463 432 aa, chain - ## HITS:1 COG:lin2010 KEGG:ns NR:ns ## COG: lin2010 COG0017 # Protein_GI_number: 16801076 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Listeria innocua # 5 432 3 430 430 560 61.0 1e-159 MTDLISIKQAPEYVGKEVKMHVWLTDKRSSGKIMFLQLRDGTAFFQGVLLKKDVSEEKFD LAKSLRQEASFYITGVINEDERSHFGYEIKISDLELVSNTEDYPIGNKEHGIDFLLDHRH LWLRSRRPFAIMQIRNEMINATYDFFKKEGFIKFDAPILMNSAPEGTTELFHIEYFDNDA YLSQSGQLYAEVGAEAFGKVFTFGPTFRAEKSKTRRHLTEFWMIEPEMAWTHQDESLDVQ ERYISYLVKRVIDNCEYELNILGRDVEKLRPAAEGNYTRLKYDDAVKMLQDAGRDFKWGD DFGAPDEAYISEQFDRPVFIMNYPTSIKPFYMKKDPENPKEYLCADMLAPEGYGEIVGGS EREENFDVLKAQIEEAGLNLENYEWYLDLRRYGSVPHSGFGLGFERAITWICHLDHLREA IPFPRMINRMEP >gi|313656766|gb|GL545251.1| GENE 474 492200 - 492691 542 163 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01170 NR:ns ## KEGG: LCRIS_01170 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 9 163 11 165 165 114 38.0 1e-24 MYLGNRIWKYVFAVVAAIVVLIIGFYTVFGLAAHGQAAGKIQAANRAVRYTAIKKVTAYY HLNRGVNSYAVKGQTSKGKTAYYIYLTKQNKGHYLLAKKGYSANQVTKRFSMLHSDTKAN GLNLGWYNNEAVWEIAYRKYNGKYGYAIYSFRTGKELSFIDNV >gi|313656766|gb|GL545251.1| GENE 475 492675 - 495179 2031 834 aa, chain - ## HITS:1 COG:lin2013_2 KEGG:ns NR:ns ## COG: lin2013_2 COG1199 # Protein_GI_number: 16801079 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 158 811 1 649 668 224 27.0 5e-58 MNAELAANSFPKLHNRAIDTVELSKIAFPTLPSYRLSDLTHSLNLKHTNPHQADSDAYAT ASLLLKIFDKLETLPQSTLNTLTSLSKGLLRDTQFIFKEISEFTRQEKRPLPKKYRQVHS LVLKKQDQVLHSDNAKKAIFPKSDEDKKQLFKGKLEFRPAQVNLINKLHAFFNNERKAIL VEAPSGTGKSFSYLFSCLYNLYRGQKLVIATPTMILQNQLIEKDLPLALQVSGLDLSSQV VKASRHYLDLDGFEQSLKKKTENQETLILKMKILIWLTETSTGDLDELHTTNFAAPYFAQ VQHPGDARVGTVFSPYDFWNLARYRQEQADILITNQAYLANHYQDSIWGQNPYLIVDEAH RFSDIVMNSRNNSLQFESFWGMLSHLRNIILFGEDNIAQDYKNSPVIANLADKADSTIGD VIHAINDLQTYLYNKKDTAIARKILPNGHLQVAVESEAFTDLDKFLQLLASLQNKIEEIR TIVNQLLGILYQISDSFLPREEARLNELSEQVDLLDYYSEQAYLLSDLLNDHEQFSNCGL VLDVTNPADPLATNLNWMLLDPRFELEKIYACFKKIVFISATLSNNGDFSFSKKNLSLTK LDCAEFYSNYNFKLEQQVLALSLVDSKAPLYPSDDLYRDFVAPLLLNSIKKQDKVLVLFT NLEAIADVYSAIVTRPEFKDFELLAQGVTGSNEKIVKRFNVAKRAIILGANSFWEGVDFG QTKVNLVIATKLPFESPDQVEVKLRQTNLSRQGIDVFSEDSLPRAILRLKQGMGRLIRSP KDSGIFALLDQRIWTSNYGPEFLDSLPGRPVQVNLDELEKNIRKGYDKDNVSGK >gi|313656766|gb|GL545251.1| GENE 476 495176 - 495490 376 104 aa, chain - ## HITS:1 COG:lin2013_1 KEGG:ns NR:ns ## COG: lin2013_1 COG0847 # Protein_GI_number: 16801079 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Listeria innocua # 12 104 6 99 260 97 48.0 7e-21 MWVNQALSDQVFAVVDLETTGTRRGQDRIIQFGCAIIKNRQIIKTYSFLINPEADIPQAV QNLTGIKPTDVINQPVFKKYAAQIEDILQDTVFVAHNINFDLPF >gi|313656766|gb|GL545251.1| GENE 477 495605 - 499126 2936 1173 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 4 1170 11 1217 1232 567 31.0 1e-161 MVNYTKEQEAAINTREKDILVSASAGSGKTMVLAERVIKLIKDGTSLDNLLVITFTKAAA NEMKERIKRVLNEEIAQNNSRELKRELLRAEVANISTIDSFCLDVVHRFYYVIGLDPSFS VLTDETQAALLKEKALRELEKKAFSNQDNPYRIFYDNFAGDRDANGARELLLDLYNYAMA RPDYDLWLDSLAKDYELADDLSQAPFFVKVIKPYLSKILIEMTDKVDKILADPFNEATEL EKIMKDFLSFSKRLAQAETSLENGSFDQIRASLQDCQFTENPRKSPKWDEDILDRYASLS QVRTELREQVKSLFAAFFVVDNEEQTAVMKQSSMIIKAVCLAEKELIATFNSLKRKQNLL DYSDMEQLAYQILTSDTTAGHLARQFYQNKFTEILVDEYQDINKLQERIIQLMKCEHNNL FMVGDVKQSIYGFRQADPSLFLNKYQKFAEDSSSKRIVLADNFRSTKPVTKIVNKLFNPL LTPDFGGIDYQNEGQLKFGASYYPDNLPAASELLFYDKSEASDESNQIQLVINRIKQLID EGFEVFDVKTGLKRPIEFSDIAILTRSRSQNLDLLKQFAQNNIPLFVSDVANYFQTFELT IIMSYLKIVDNPDQDIPLVAVLRSPIFNFKEPDLAKIRIKSPNMSFYSALTNYVSENDEL SKRIKDFLNQLADLRDFALNHRISETIWSIYARTSLLEIVTSLPNGKQRRINLENLYERA NSYESAGFKGLYQFINFINRMRKNQKDLAQPLLSKEAENSVQLMTIHASKGLEFPVVFYL GLEHQFQKSDLSGNYIISGDSCGITVVRSDWRIDSLVKAMGNVTKQKQLLEEEARIMYVA VTRARQKLILVTNFKDFAKDTDNLKASLANNGSLTLTSELAAQKPADLLLPQLDLAHHFI NQITDLQPEVESKQDFLVVTGDATVVELAKETNMDEKGEVSEFIVKNVKKLYEATYPFKD ATTTTAYQSVSELKKAFNDPIDDELANSRFIKSANRYLQDIDTRPGFLFEDGFTGAEIGT AMHLILQFFDYQGNTSVEAEIERLVQSGKLNSKIVPHLPIAEITWFVNSDFAKKFWNEPG KLKREVSFSSLLPAADIFTPFSDPNAKILVHGTVDGYYLDDDGIILFDYKTDYVNKNQLA QSINKIKDKYTGQLRLYERALNQLGQEKLKVNI >gi|313656766|gb|GL545251.1| GENE 478 499119 - 501311 1755 730 aa, chain - ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 37 709 466 1140 1157 196 23.0 1e-49 MAHGINYYLWNRPLTSFVKIKRPVITLDKRATEIERLEKLRQVIIKELSHFIEQFKKTSE VKAGVKFFFDFLVKIGLTKRLETWRKQAIDKNDLQASQEPKQIWDLLLNLLNDFLLINKP EEEFSASDFLRILISGFKEANFAQIPASLDAVSLSEMGMVQAKNYKNVFIIGASSSNLPQ ISNTPGFLTSENLAQISSADTDNALEDRQELANLDQDYQFGACLTLASNWVYVSYPFLNT ANESIQPSTYYTKLQELGARELEQADLPKEDASDILSFTTNAKASLGYLTNLSPAYQNTL LDLAKNYAPQKYSQLVKGRNYNNQPVNLGEQLARELYGVKLTSSVSQLETYYQNSLEYFF NYGLRLRPRAENELDVIQAGNYFHQTFDYLVKYAHAQQIDLATLSNDQILAALTEVRKQI HQEGSYEQLLSEPFNQYLFTSLDKTVNAVAFNWKKRMAQTPFRPAYSELAFGSGNKLAGL KFKLDQLREIDLRGKIDRVDLAPYKNELLGQVIDYKSSSKNFDLALFASGISLQMVSYLD VLAKNASFFGNESLDLLGAFYQTITKQVERLNKADQLDSNFLPKKALEQAKQRLVYSGLL VNNEDYILTADPELKEPKVSSKLYKSVRSKARGGLTLPRDRHFTEDELKLVLRYNEYLIR KAGRAILTGDLALNPYQYGQENGLKYSSYQDIFFFDAKLAENSYRKINSLDKASFMQYIK EILEKEEDNG >gi|313656766|gb|GL545251.1| GENE 479 501332 - 502573 911 413 aa, chain - ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 2 399 3 402 1157 106 21.0 9e-23 MLKILTGRQSDPLHEKILAEAVENYEQNPELETFIIVPNHIKFTTEIEAITKLAGLRRKS EASVKNLHILSFSRLAWFFLQDRPEVLKPVIDEAASSMLLEKIVTEKKNELILFNQFSQN SGLIKQIYQSINEVSNSDFDLIEAQNQVTDEETKNKLHDLAIIKTAFDDAIAERFITKQD FLNEMNIFLAGNNRLKNCSFYFVDFSQFNGTEQVAVELFSKQAQKVVLAFATEDGKIKTA PEAGDYDYVVQKTIKKLQRRIIFSHEQYESPVKDLTAKQLLDHYWTGDLESNEQTKPNVQ LIKADSRYDEAYFVARTIYQQVSLNKFRYQDFLVLAPNLHEYETYLTPILRQNGIPFFND LQKEMKYHPLVIFIESLQTILETGFESASLFALLKTRLFIPAFIMMKQHFCVM >gi|313656766|gb|GL545251.1| GENE 480 502629 - 503126 445 165 aa, chain + ## HITS:1 COG:L7866 KEGG:ns NR:ns ## COG: L7866 COG1577 # Protein_GI_number: 15672386 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Lactococcus lactis # 6 164 10 168 310 96 33.0 2e-20 MQTSYLAHGKVILIGEHSVVYGYDALSMPIQSLNIKTTVSENNNPCHYMDTDRYHGDFFK APSEYAGLKYILQHFLTLKPNSPYLKISYRGLIPIERGLGSSATVSLGTTKALNDFFQLN LSEQEIMAITNHAETINHGKASGLDSATVNSDYLVFFNKKQALKY >gi|313656766|gb|GL545251.1| GENE 481 503156 - 503542 402 128 aa, chain + ## HITS:1 COG:SP0381 KEGG:ns NR:ns ## COG: SP0381 COG1577 # Protein_GI_number: 15900304 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 128 168 292 292 85 39.0 3e-17 MDTGDLGNTKEAVELVKNEVTNSPKQAENLTNLGNLTVQVKKAWLNQDAECVGNAFTQAQ KYLAKLKVSTPKIDHLCQIALDTGAYGTKLSGGGLGGIVIALCSNQELAQAIANKSHKLI SNYWIEEI >gi|313656766|gb|GL545251.1| GENE 482 503542 - 504504 784 320 aa, chain + ## HITS:1 COG:lin0011 KEGG:ns NR:ns ## COG: lin0011 COG3407 # Protein_GI_number: 16799090 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Listeria innocua # 1 311 17 329 339 226 43.0 6e-59 MKNTARAHTNIALIKYWGKKDADLRLPLMSSISMTLDAFYTDTSLIIDTEDKKFILNGQE VTGQAANRVFAYVERLQKLFNVSGNFHVISDNHVPTAAGLASSSSAFAALAASFVKAYNL SISTKGLSILARLGSGSATRSVYGGFVKWNKGTNSSNSFAEVIEEKPQMDLRLLAVEVNV AEKKLSSTEGMKLAQTSPFFKPWIARNDEEIEQMETAIKNNDFTKLGQLAELSASEMHAI NLAAQPGFTYFANETLEIIKLIQELRNNGLECYYTIDAGPNVKILCQKNSCSDIKKYVKN ILPNVKIVEAGFGPGITYLY >gi|313656766|gb|GL545251.1| GENE 483 504543 - 505631 948 362 aa, chain + ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 354 1 355 358 282 41.0 9e-76 MITEKAPGKLYIAGEYAVLEQNCPAIIVALNQFVRVSISAAVGNTGIIHSKQYSQDSIHW RRQGNKMVIDNRDNPFEYILAAIRFTEQYLLENGTSLKVYDLHVNSDLDSKDGRKYGLGS SAAVTVATVKAILAFYGIERKHDLVYKLAAISHYSVQGNGSAGDIAASVYGGWLAYQTFD KDWLKHELATKKLSDVLTEAWPGLQVQLLTPPEGMELVIGWSQKPASTSRLVDETNAQKE NFQQEYEAFLTNSRQCVLKMIAGFKQHNISLIQEQIRVNRKLLAHFAKLNHIAIEIPRLT ELIEIAEKFGFAAKTSGAGNGDCGIVITNHNGKIADLKAEWLKAGILPLDFHVHILNQTK EK >gi|313656766|gb|GL545251.1| GENE 484 505819 - 506652 934 277 aa, chain + ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 1 257 66 326 349 186 40.0 3e-47 MTGGSEKSKEINRAIGKASRIGQIPFATGSSSILAKEKDQLASFYAAREENPDGLFFANV NPNTPASIAKNIVKELNADALQIHINTVQELAMPEGDRDFVWLDKLKAIRDEVDIPVIIK EVGFGFDKSSIDLLQKNDFHLIDLGGAGGTNFAQIENGRSSHPLPYLDELGLSTVKSALI AQDSGIDFFASGGIRNALDILKCLVLGAKSVGIANLFLQVYENGGEDGLVETVLRFEDEL AGLFALFGINKVNEATKVKYALTKGLWKEFIQIAVDD >gi|313656766|gb|GL545251.1| GENE 485 506721 - 508109 1086 462 aa, chain - ## HITS:1 COG:SPy1246_1 KEGG:ns NR:ns ## COG: SPy1246_1 COG0144 # Protein_GI_number: 15675206 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pyogenes M1 GAS # 4 293 2 281 297 254 47.0 4e-67 MDKLVLPKEFIDKYQKLLATKASSFFTALEAEPKKAFRLNPLKANYQKVSYDLSEPVNGV EDAYYGEISGRDIEWVNGYVYSQDPSAMYPAEALGVKPGQKVLDLCAAPGGKSTALLSAL KNEGLLVANEISASRAKNLRENIERWGASNCLVTNEDTSQLAKKFPHFFDAILVDAPCSG EGMFRKNHDAVTYWSQEYVLECSSRQKEILNEAVKMLKTGGSLLYSTCTYAPEEDEKICA YLVNKLGFKLVKTKVNVASAGVPAWGENLAGIEYARRFWPQDEIGEGQFLAKFILSKASD TEENIDDFKQKNKKRRKKAGKKVEIFTKAEKELVKELLASFNLPVSFDFSKAAKSNDHVY IPAVEDTSQIKVLNNGLELGILKKGRFQPSQQLAQYLGQMQQERVVELQNQAEFEKYLHG ETVKTEKKLKGFVLVSYQGKIFSFGKVAGQVVKNFYPKGLRV >gi|313656766|gb|GL545251.1| GENE 486 508102 - 509073 633 323 aa, chain - ## HITS:1 COG:no KEGG:lhv_1280 NR:ns ## KEGG: lhv_1280 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 322 1 320 327 176 31.0 1e-42 MKIKKTFLGIFLLACFLIAGVLVSNIQSISADQVLTASGLSSYSRNLKTKSKIEIRTLLK YITEKYPNEKITLELTNKYDQDQVLIWSNYQNELLPVARGRYFNPEEFDGVVTFGIVSPT SNIQMLTTQDNKYIVLDNRYISVVGTLKEVSDNIQTKYYLTTGLNQANSKNRLNNFDIII DSPSNRVIQGISKYLNGQVTFSELVSTHRRTHFIRAIAFSILLGIIVLFAGLIAGACAII NHTYKQMDGIDRPLKKYFIATKLGRFAFINLIMGFVSYILLTWRLYFTSLDYLIILMTLM IVLNIVIYMLVVVFLNKRKEKIG >gi|313656766|gb|GL545251.1| GENE 487 509063 - 509785 661 240 aa, chain - ## HITS:1 COG:no KEGG:lhv_1281 NR:ns ## KEGG: lhv_1281 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 240 1 249 250 235 48.0 1e-60 MTDFLTKLIKIDSELNIPKLHQQVSEIRQVCSKLDKKELPESQIKKLGLVTEQENKTKKV QVANNLLNSFRQYLSLHYGLWSLPNIQTAQIIKEKYNVTSAVEVMAGNAAWSKALSLAGI KVKASDNLVWSKTSKTGKNCFYPVENLDAKTAITKYQDCDLIICSWAPNFGHADIDLINT WKKLEHKPKLLFVGEEFGVTNSEDFWQTTPFSENSALVAVNASFSSFDFIEERFFEIDED >gi|313656766|gb|GL545251.1| GENE 488 509943 - 510449 563 168 aa, chain + ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 6 156 26 180 188 133 45.0 1e-31 MAAILLGIYYLIFSFVLSNETVSGPSMQPTFENGDRIIAVRHTSLKRGDIVILNAPDEPG ALYIKRIVGMPGDSITYKNDQLYLNGKKYSEPYLTEGKKLYANGQLYTENFSLKSKFGVN KVPSGEYFVMGDHRNVSKDSRYFGFVKRKAIVGKVIFRYWPLTKWSTF >gi|313656766|gb|GL545251.1| GENE 489 510521 - 510706 228 61 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01185 NR:ns ## KEGG: LCRIS_01185 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 3 59 4 60 62 76 75.0 3e-13 MNQEELSDVIITYQVKHHVNDTELAFASHLSVEKIHAMKTGDGSFTSEEINQILEYIQSQ D >gi|313656766|gb|GL545251.1| GENE 490 510746 - 511363 466 205 aa, chain - ## HITS:1 COG:SP0288 KEGG:ns NR:ns ## COG: SP0288 COG1266 # Protein_GI_number: 15900222 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pneumoniae TIGR4 # 24 202 44 218 230 62 29.0 6e-10 MTSYIIPKSLNSHKEVLGKYHFVLYVATIALVMLVYHIYKKQLEQENEWHFNEKPHFKWS KLGYSGLAFVVMIAAQVLINILLSTSSNSANQKAIDQLAKGTDWHFIVFIIFLAPMFEEI ILRGQFFNIAFTKETKLNYWLGIIVNGLFFAWLHDPTFSIHIFTYWVMGAILAATYMNTK DLRYSFVTHMLNNTIAALPLILGMH >gi|313656766|gb|GL545251.1| GENE 491 511493 - 512188 361 231 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854645|ref|ZP_04644975.1| ## NR: gi|238854645|ref|ZP_04644975.1| hypothetical protein LACJE0001_0608 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative membrane protein [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00992 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0608 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00992 [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] putative membrane protein [Lactobacillus jensenii 208-1] # 1 231 22 252 252 352 100.0 9e-96 MYFLISLILAGFLITGRAWSSVDFSLVPEDKGLPLVMSFSSTLYKFDLLFFVWCIYYFAK DLRKQTWHLVPLSSTKIFTAQWLSTLLACAYLFIGQLLLTFISYVVSYLWASNQVLNGLR LLFDAKYEFLNDLVFLTFFCFAWLLFTALVEICKYGIISLLPFSGNKIFENIIEIILVII GLIIAINGFEFMFLHVGTTEATGNAFMVILSLLLWIVVQPLFNLIGESKTE >gi|313656766|gb|GL545251.1| GENE 492 512263 - 513060 576 265 aa, chain - ## HITS:1 COG:no KEGG:LBA1187 NR:ns ## KEGG: LBA1187 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 263 1 276 276 70 25.0 6e-11 MTNFSTVFKLLQAKKAKKILVIYVIQLAAIMAIGTYLYLVNPKEFESIFVSYEVIALTTS FFALVISWCILFIDEIKMYESQTWQLLPISSKKFFLANILTTYVTLFYMALFDLGTCVVL ITVAFAASKPELKDISVGKTLGQVPVGEIALYGLGIALLIALGLISFSLMINFLSFSSKT IVNLLPGFKSKKLIGILRVIFAVICYAIITYFIHIFSNVFGVGIIEKQVDLLAVWLSVAE TATFVLVGIFADTWIYQKFFEAKAV >gi|313656766|gb|GL545251.1| GENE 493 513075 - 513887 371 270 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854647|ref|ZP_04644977.1| ## NR: gi|238854647|ref|ZP_04644977.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative ABC transporter, permease [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] putative ABC transporter, permease [Lactobacillus jensenii 208-1] # 1 270 1 270 270 361 100.0 4e-98 MTSFKNLFKVMQVPKLKNASLVYLLQVIGMIAIGSFLFFNDHLSSLAEGFFLAEFITLFF TGLFLYFYLLYKEIKSYESQTWQLMPISSAKFYLTNQLTTYLAIALFLALQAINGIIILG TYLLSYSVTTSELSEIINSSKFTSLVSEISAYMISIGIFLVLAAISFVVMIILLVMISQV IINLLPGFKSKGLVNIVRIIIGIICYLIIGNTFSFIFNSLLKIKDNPFTATSNFDLSSLW MSNGVSVLVILVITAINLYLLKRFFEAKAN >gi|313656766|gb|GL545251.1| GENE 494 513887 - 514588 177 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 210 1 219 305 72 26 5e-11 MNKALEIHNLTYKKNQKTILDNINLDLAQGKIVALLGENGAGKTTLMRCIAGVAKNWSGS IKVAGETGEAEKKAKLAFTDKLTGFSDSTKIKYVIKFYEIIYSDFDLEEFTKLREFMKLS PDMRLGQLSRGMREKLVIALTFARKADLYLLDEPFSGIDPMARKKIINSIILWKDDKATI LISDHFVNEIATLLDEVIILKDNRILTHQSADQIRSENTSIEDFYQGFYEGEE >gi|313656766|gb|GL545251.1| GENE 495 514588 - 514956 354 122 aa, chain - ## HITS:1 COG:SPy1285 KEGG:ns NR:ns ## COG: SPy1285 COG1725 # Protein_GI_number: 15675238 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 2 117 4 119 123 95 37.0 1e-20 MEFKDNVPIYIQIEQHLYRLIVQGELPAGQRIPSVRQLAVDLTVNVNTVQRALQEMNNQG ILFTKRGEGNFVTEDTALLEKTKKELLTRELDDFVENMHRLGVKNDELIPTLSNYLENLG EK >gi|313656766|gb|GL545251.1| GENE 496 515250 - 516488 1764 412 aa, chain - ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 1 412 1 413 413 444 53.0 1e-124 MEYPTLLPRFLKYVKINSRSDEHADRFPSTQREVDFQMIIKKDLEELGLSDIHYNEKAGV LIAEIPSNVDYDMPVMGFLAHCDTADFNSENIKPQIVENYDGESKIQLGDSEFYLDPAVF PNMKKYKGQTIISASGDTLLGGDDKCGVSELVTFAEYLLAHPEIKHGRIRLGFTPDEEIG TGAGHFDVEDFGADFAYTVDGEAPGKLDWGTFSAAQFGLDIQGVNVHPAVAKGQMINAIQ VGINFQNALPKNEVPEQTEGREGFYHLMNFQGTVDHAHLDYIIRDFERDGLEARKNLVKS IVKKMNDEFGEERLKLKMWDQYYNMADELKKHMEVVDLARDAYKAEGLTINEDPVRGGTD GSQLTYMGLPCPNLFAGEENMHGRFEYTVLESMWKAVDVMIKMAQLHAERSK >gi|313656766|gb|GL545251.1| GENE 497 516505 - 517302 1140 265 aa, chain - ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 16 264 15 265 265 195 40.0 9e-50 MTKVKDIIAKLNERFPENIASSGDPVGLQIGSVYAEVTKIMTTLDVRPNVVDEAVEKGVD LIISHHPVMFRPARNLDFSDPQNAMYGKIIANGITVYSIHTNSDKAENGSSDWQAEELGL TDVEPFAIDDDGIAVGRKGKLPKPLKAIDFAYYVKKQMNVDFVRLITASNDKMISTVGFV CGDGGKFWRDALKDNLDAYITGDVYYHVGHDMISSGLTVVDPGHYTESLFKTKCAEILND FKADEKWPVEIIVSQESTDPFQDLM >gi|313656766|gb|GL545251.1| GENE 498 517295 - 517594 312 99 aa, chain - ## HITS:1 COG:no KEGG:lhv_1293 NR:ns ## KEGG: lhv_1293 # Name: not_defined # Def: putative methyltransferase # Organism: L.helveticus # Pathway: not_defined # 1 99 130 228 228 116 61.0 3e-25 MEHNYQIIQEEIIDTAGHIYELIKAILTDKMHQLSDKEILFGPFLLKEKNSVFIKKWTNQ LAYQKQLLVNLNKAKNKDMTRISEVEQRIKFIEGELTND >gi|313656766|gb|GL545251.1| GENE 499 517639 - 517983 533 114 aa, chain - ## HITS:1 COG:L84257 KEGG:ns NR:ns ## COG: L84257 COG2384 # Protein_GI_number: 15673054 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Lactococcus lactis # 2 112 6 116 230 107 51.0 4e-24 MLETRLAHLAAMVDENTRLADIGTDHAYLPIDLVKSGKIQFAIASDVAKGPLDNAKTDIL EAGLSNQIQTRLGSGLETIKPEDKIETVVIAGMGGKLMTDLLEAAKEKMNFILL >gi|313656766|gb|GL545251.1| GENE 500 518046 - 518852 890 268 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 1 268 107 374 374 431 88.0 1e-121 MYLKEIGRVPLLNADEEITLAKRIQDGDEEAKQELAEANLRLVVSIAKRYVGRGMQFLDL IQEGNMGLMKAVDKFNYKLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLI RIQRQLLQDLGREPTPEEIGAEMDMGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIE DKDATSPEQHASYEMLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTR ERIRQIEAKALRKLRHPSRSNQLKDFLD >gi|313656766|gb|GL545251.1| GENE 501 518867 - 519139 290 90 aa, chain - ## HITS:1 COG:no KEGG:Ldb1246 NR:ns ## KEGG: Ldb1246 # Name: sigA, rpoD # Def: RNA polymerase sigma factor RpoD # Organism: L.delbrueckii # Pathway: not_defined # 3 77 11 85 372 90 68.0 2e-17 MADMTLDKKVKELVKEVKKSKEITETDFTEKLIKPYKLEGKAVDQLVQEFEDNGISIVDA NGDPSNLALKKQKMLKKKNSKIYLHLQVFG >gi|313656766|gb|GL545251.1| GENE 502 519152 - 519349 206 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854654|ref|ZP_04644984.1| ## NR: gi|238854654|ref|ZP_04644984.1| DNA primase [Lactobacillus jensenii 269-3] DNA primase [Lactobacillus jensenii 208-1] DNA primase [Lactobacillus jensenii 269-3] DNA primase [Lactobacillus jensenii 208-1] # 1 65 531 595 595 122 100.0 1e-26 MEMMTMPEDFSKEEVDGLLASLKRLDNQRKISNLQMQLQDAQRRQDEDQVLKTLEMIINA KRNNN >gi|313656766|gb|GL545251.1| GENE 503 519694 - 520938 1138 414 aa, chain - ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 3 414 2 422 626 353 42.0 3e-97 MAGRIPEDFINEVRNGINIVDVISQYVSLEKRGKDYVGLCPFHQEKTPSFTVSEDKQFFK CFGCGKGGNVFSFMQYKESLSFPEAVAEVAKMANLAMPSSYQSEAKPLSPLKKVHQDACE FFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDDTVLAK SGLFSQNESGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPETEIFNKS KVLFHLKEAKKAVRTEKHLVLYEGYMDVIAAYKAGIKTGIASMGTSLTDDQVYLLKRISR NIIINYDGDEPGQHAIERASHMFETIGGFQVGVVSLPEGLDPDEYVKKYGPERYQDEVKG AITPTDFFLKRLELKYNFSNDREKLAYLDEAIKLIAPLTNPVERDLYVTKLAKK >gi|313656766|gb|GL545251.1| GENE 504 520989 - 523055 2509 688 aa, chain - ## HITS:1 COG:SPy1688 KEGG:ns NR:ns ## COG: SPy1688 COG0751 # Protein_GI_number: 15675548 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 688 1 679 679 604 48.0 1e-172 MTKDYLFEIGTEEMPAHVVSRSVKQLADRTSKFLKDNGLEFKAIKTFSTPRRLTILVQDL AEKQADIDEVKKGPAKKIALDSEGNFTKAAQGFVRGQGMTTDDIYFEDLKGTEYAYVHVQ KAGKLATDILLGMSDIIKAMTFPTKMRWGSNDFEFVRPIHWLVSLFGSEVVPVKILDITA GRKTMGHRFLGDSVILANSDDYEEALKSQFVIADAAERKTMIVNQIDQLVAENNWKVKLD ASLLEEVTNLVEYPTVFAGSFDESYLNIPDEVLITSMKDNQRYFEVYDQDGKLINHFISV RNGNKEFLENVISGNEKVLVARLDDAKFFYDEDKKYPLSHFVSRLDKVSFHDKIGSMAEK LIRVRIIGEYLAKKFGLSDEVIKNFDRASELYKFDLVTQMVGEFAELQGVMGMHYAELAG ENKDVALAIKEHYMPLTAEGELPTSEVGALLSVADKFDNIITFFAAGMIPTSSNDPYALR RYAYGIVRILLNENWSLAIDKALPKMVELLDGKTKAKMPKTSQEDEEISLFIRDRIKQFL QTNNYKYDVIDAVLHSSQKDPSRILAAAKVLQAHHDSPEFKPVVESLIRIENILKKAKYK GDSVVKSDLFEDNSENELYLASQNLQAIDNLTELYEAFVSMQKVIDRYFEVNMIMAKDEA VKNNRLAQLSQINELATRLGALSKLVIK >gi|313656766|gb|GL545251.1| GENE 505 523048 - 523965 1071 305 aa, chain - ## HITS:1 COG:BS_glyQ KEGG:ns NR:ns ## COG: BS_glyQ COG0752 # Protein_GI_number: 16079581 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Bacillus subtilis # 6 293 1 288 295 449 69.0 1e-126 MTNKKLNVQDMIFKLEQFWASKGCMIMPSYDVEKGAGTMSPYTFLRAVGPEPWAACYVEP SRRPADGRYGDNPNRLFQHHQFQAVIKPAPIDIQQYYLDSLRVLGIEPLEHDIRFVEDNW ENPSMGCAGVGWEVWLDGMEVSQFTYFQVVGELDVKPTMSEITYGVERLASYIQDVNSVF DLEWGNGILYRDIFKEPEYEHSKYAFEESNQEELLQFFDTYEATAKELLGKNLVHPAYDY ILKCSHTFNLLDARGAVSVTERAGYLARIRNMAHEVAQCFVEEREKRGFPLLKSAEVEKA ESEND >gi|313656766|gb|GL545251.1| GENE 506 524209 - 524964 630 251 aa, chain - ## HITS:1 COG:lin1497 KEGG:ns NR:ns ## COG: lin1497 COG1381 # Protein_GI_number: 16800565 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Listeria innocua # 10 248 6 244 255 169 36.0 3e-42 MVKEVVEVTGIVFKRQRYKEADVLAKIISKDMGIFTMLVRGALRPKSKLSASVLAFSFGK YQVLTSQKGLSTLKTYKDVKQFTNLYSDLTLNSYACYLCDLLDHAFIEYQSLGNFYKLIL VALDKLNAGVDPEIICQLVELQMLAVYGVRPQLKQCAICGETHGPFDYSISAGGIICQKH FNQIARMHLNDKQVAMIRTLGLIKIERLGQINVKSDTKKVIRKAIDRIYFQTVDINLKTK KFLDEMRRLNI >gi|313656766|gb|GL545251.1| GENE 507 524964 - 525872 1045 302 aa, chain - ## HITS:1 COG:SA1396 KEGG:ns NR:ns ## COG: SA1396 COG1159 # Protein_GI_number: 15927147 # Func_class: R General function prediction only # Function: GTPase # Organism: Staphylococcus aureus N315 # 8 296 5 294 299 341 57.0 8e-94 MVETNKFKSGFVALIGRPNVGKSTLMNHLIGQKVVITSNKPQTTRNKISGIFTTDNLQAV FVDTPGIHKPKNKLDDYMDKASLSSLNDVDLVFFMVEPEKVGKGDEYIADLLSKVKAPVF LIINKIDQVHPDALLPVIESYQKLGKFAEIVPISATNGNNMEDLISTLYKYLPEGPQFYG SDEVTDRPEYFVVAELIREQILRLTQQEIPHATAVVVDRMNERINGKLQVEATIYVERDG QKKIIIGRGGSMLKKIGIQSRKQIESLLGEKINLHLWVKVQKNWRTDPSFLKQIGYDSKD LF >gi|313656766|gb|GL545251.1| GENE 508 525856 - 526278 481 140 aa, chain - ## HITS:1 COG:BS_cdd KEGG:ns NR:ns ## COG: BS_cdd COG0295 # Protein_GI_number: 16079584 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Bacillus subtilis # 1 138 1 134 136 123 48.0 8e-29 MNSEEKKLYDLAVEHLDTAYAPYSKFHVSAALLTESGKITTGVNIENAAYGSTICAERVA IFNYVNQGLTNDPIKCLLITGNTSRPISPCGSCRQVMAEFMQADTKIVLTNAKGDYKEAT LADILPYYFTDGDLVDGRNK >gi|313656766|gb|GL545251.1| GENE 509 526278 - 526802 618 174 aa, chain - ## HITS:1 COG:SA1399 KEGG:ns NR:ns ## COG: SA1399 COG0319 # Protein_GI_number: 15927150 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 6 161 4 152 155 120 44.0 2e-27 MDAIDITYNDETNFLADTSRDWRKWIMDLLLMAKKEIGKENNLEMSINFVDEDKSHQINR DYRDKDRPTDVISFAIEDGEEGVDLASFISDPDFTEDIGDLFMCISVIKRHAEEYETGFD REFGYTLVHGFLHLNGYDHIEPAEAKEMFGIQGKVLEEYGLPLYPDQLDEGRGK >gi|313656766|gb|GL545251.1| GENE 510 526802 - 527755 1083 317 aa, chain - ## HITS:1 COG:lin1504 KEGG:ns NR:ns ## COG: lin1504 COG1702 # Protein_GI_number: 16800572 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Listeria innocua # 13 313 16 315 319 360 61.0 2e-99 MPQFTFTPKNPANLMSLVGINDANLKLLADGYDIKVSDTGNGILIDSPDEKKVKLVIKVL AALEKVVNSGVSIAAPDVVSAMKMAEKGTVEFFGDLYNKVLIRDAKGRPIRPKNAGQQAY IEAIQKTDIVFGIGPAGTGKTFLAVVMAVSAFKNGEVSRIILTRPAVEAGESLGFLPGDL KEKVDPYLRPIYDSLYAVLGTETTNRLMERGVIEVAPLAYMRGRTLDEAYVILDEAQNTT DAQMKMFLTRLGFNSKMIVNGDVTQVDLPGKQHSGLLDAMHILKDVDQVKFVNFTFNDVV RHPVVAKIIRAYEEEGH >gi|313656766|gb|GL545251.1| GENE 511 527776 - 528237 397 153 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 152 1 147 147 157 55 1e-36 MSLMDQLMADMKEAMKAKDKERLATIRMLKSALMYATIKDEGKLSDNQLSREQELAVLGK EKKQREESIADFKKAGRDDLVAATEKELEIVESYMPKPFTEEELSKLVDETIAEVGASSK ADFGKVMKAIVPKITGRADGKEVSKLVGAALSK >gi|313656766|gb|GL545251.1| GENE 512 528309 - 528485 292 58 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 [Lactobacillus acidophilus NCFM] # 1 58 1 58 58 117 100 2e-24 MAKTIVHENESIDDALRRFKRSVSRSGTLQEYRKREFYEKPSVRRKLKSEAARKRRHY >gi|313656766|gb|GL545251.1| GENE 513 528448 - 528567 217 39 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239632784|ref|ZP_04675815.1| SSU ribosomal protein S21P [Lactobacillus jensenii 1153] # 1 39 1 39 39 88 97 1e-15 MTYKDLFGYNLTILLWQYCQEMEGGISHGQDYCSRKRVN >gi|313656766|gb|GL545251.1| GENE 514 528631 - 529455 792 274 aa, chain + ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 9 264 10 264 270 220 43.0 3e-57 MEKSKIVNIIIISDSVGDTAFNLMKAAAAQYPDAEVNYRRYPFITTMEKLEKVFDELDSC EHMLIGYTLVNSDLQLATIKFAREHGAKPVDIFSSVVDDIHAMTGLEPSGQIGASHQLTK NYFDRISAMEFAVMYDDGKDPKGFLEADVVLLGVSRTSKTPLSLFLANKNLKVANLPLVP QTHIPDEIYQIDPKKIIGLTNDPQVLNEIRVARLKSYGLDPETSYSNMDAINKELASAQA LFTKLGCYVVNVAHRSIEETAALILRHLGIEDEM >gi|313656766|gb|GL545251.1| GENE 515 529503 - 529754 340 83 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 1 79 232 310 313 85 49.0 2e-17 MIVTEHPKKIIDGIQEKMHRGITIIHDVEGAYGHTEKTILFTIIDRYDMYDIHNIIVACD PYAFVSVSEVAKVYGRFKEQELV >gi|313656766|gb|GL545251.1| GENE 516 529793 - 530380 698 195 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 1 194 24 216 313 171 43.0 1e-42 MESLEGLSRRYNLLSKISAAFLYAIAVAVALNFFWQPGHMYSSGVTGFAQLINTLSERYL PFTLTTSTLYFALNVPLFILGWFKIGKKFTIFTIIAVFLASIMMHNLPAPEWKLDPLVCA IFGGVINGVGTGLALKSGISTGGLDIVGIILRKKTGQSFGSINIAINLLIVIAAGFVFGW TRSLYTALNILSTAG >gi|313656766|gb|GL545251.1| GENE 517 530458 - 530988 727 176 aa, chain - ## HITS:1 COG:BS_yppP KEGG:ns NR:ns ## COG: BS_yppP COG0225 # Protein_GI_number: 16079228 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Bacillus subtilis # 1 172 1 174 177 208 59.0 3e-54 MAEYKKAIFAGGCFWCMVQPFDTLPGVKSVISGYTGGHKENPTYEEVCSHTTGHLETVEI TYDPDKMSYEKLLSYYWQVVDPTDEMGQFQDRGETYRPVIYYNDETEKALAEKSKQELAD SGKFDKPIVVAIEPVQKFWPAEDYHQYFYQKNPLRYMMEEAGGRADFIEKHWSKNN >gi|313656766|gb|GL545251.1| GENE 518 530988 - 531428 485 146 aa, chain - ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 11 143 9 143 145 187 65.0 7e-48 MDLNEKQAALKKLSKEQYEVTQHAATEYPFSGKYDDFFEEGIYVDVVSGEPLFSSLDKYN SGCGWPAFTKPIEKVVYKRDSSHNMERTEVRSKDADSHLGHVFNDGPIDQGGMRYCINSA ALRFIPKADLEKEGYGKYLALFEGAK >gi|313656766|gb|GL545251.1| GENE 519 531510 - 532757 1256 415 aa, chain - ## HITS:1 COG:SP0137 KEGG:ns NR:ns ## COG: SP0137 COG1132 # Protein_GI_number: 15900076 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 12 415 126 535 538 137 28.0 3e-32 MKQVETAKIQNELLVIYQGITFIIAVSVGLINSWLLTLIFMVTTLIPGFIQKFFTKNIQE KSKIWEDNNAIYTQKVSDGLNGAKTVALYDVQPVLIKKIINSASNMEVALKKFNYTQGAV GELILAIANVFSFIIPFLIGAILMFNNQIGAGTLVMIIQLSNDFINPVVDIFQRYNAIKS TDSIWSKVSEALNFKIDDSVNEAISDFNSLKVSNLSYEVPNKQLFDNVNFDVKPKDKVLL MAPSGWGKTTLLSILLGRIAPSSGKVEINQVDETGNWKKLHSYFSYINQKPFIFDDSLEY NITLGRKVSSEKLNYVINQAGLKDLIEEKGLNYQVGEKGNKLSGGQIQRIEIARALLAER PIILADEATSSLDPELSLAIHKTILEQNQSAVIEVAHKVTDEERAMFTKIVKFSK >gi|313656766|gb|GL545251.1| GENE 520 532841 - 533119 84 92 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1058 NR:ns ## KEGG: LGAS_1058 # Name: not_defined # Def: ABC-type multidrug transport system, ATPase and permease component # Organism: L.gasseri # Pathway: not_defined # 12 85 2 75 525 88 62.0 9e-17 MHVKKGGSMNTSLKYAPKWKLFLYTFLAIISSLGNVVIAYVTKVMLNSAQNHQGSVQLLV VTATIGSLTLIAIMFINFGFRYLKTILFKISI >gi|313656766|gb|GL545251.1| GENE 521 533343 - 535175 2335 610 aa, chain - ## HITS:1 COG:SP2114 KEGG:ns NR:ns ## COG: SP2114 COG0173 # Protein_GI_number: 15901929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 3 583 2 578 587 662 56.0 0 MDKRTDYCGNITSQYLDQEVTLYGWVQRVRNLGNLIFIDLRDREGIVQVVVNHESGKDLM DKADSLGNEYVIEVKGKVVKRSSVNPEMKTGEVEVDATTITVLNEAKNPPFEIKDDLNAN EQTKLKYRYLDLRRSTLQRALITRSKITTAVHEFFDSEGFIDIETPDLGKSTPEGARDYL VPSRVYPGSFYALPQSPQLFKQLLMGAGFDKYYQIARCFRDEDLRGDRQPEFTQIDMETS FLDEKGVQDITERLLQKVMHDVKGVDIKLPLPRITWNDAMNYYGSDKPDMRFDMKIQDLN EVFKDSDFKVFSGAIADGGFVKAIAVEGGAKAYSRKKIEEKQEYIKRFHAKGLAWAKFED GEFSGPVSRFITDSEAEQLKKIYNLKGGELLLFVADKWKVCCDALGYLRRSIAIELNMVS KDDYHFEWVVDWPLFEYDEGDDQWIAAHHPFTMPDDEGIKLLETEPHKAHARSYDIILNG YELGGGSIRIHKKDIQLKMLKALGFTKEKAYEQFGFLLDALDMGFPPHAGLAIGLDRFAM LLTGKDNIRDVIAFPKTASASEPMMKAPSPVSDEQMAELGIEVTASARSVRDDNQKELEK EAEADIKDHE >gi|313656766|gb|GL545251.1| GENE 522 535193 - 536473 1508 426 aa, chain - ## HITS:1 COG:SPy2157 KEGG:ns NR:ns ## COG: SPy2157 COG0124 # Protein_GI_number: 15675899 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 424 426 459 54.0 1e-129 MKVQKPKGTVDILPDVSGNWEKVEQIARDFFKQANYREIRTPSFESYEVFSRSSGETSDV VEKEMYDFNDKGGRHIALRPEGTAGVVRSYVENKMYGPDVVKPFNVYYIESMFRYERPQA GRQREFHQIGCESFGSNNPLADIETIMMGNDLLNKLGVKNFELHINSLGNEVVRKAYHDA LINYFTPVKDQLSEDSQRRLMKNPLRILDSKEEQDKQFLPDAPRIVDYLDDESKANFKFI TDALDKLGIKYVLDDDLVRGLDYYTGVIFEFMVADTDLWASPTTVLGGGRYNHLVEEFGG PETPAVGFGIGEERLMLVLEKQNPELFADSGIDFFITNIGEGTALKSVELARKLRAQGQR VQYDVDQKKLKNQFKKADRVHAEFVITLGEKELAEGNVSIKRLADGKQIKLSWDEMNNIS EAMKNF >gi|313656766|gb|GL545251.1| GENE 523 536793 - 537179 333 128 aa, chain - ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 87 1 87 147 99 58.0 1e-21 MRVVIQRVNHAQVAIDNEVVGKIKKGFLLLVGIGQDDNEEVVAKAAQKIAKMRIFEDEAG KTNLSLADVNGEILSVSQFTLLADTKKVIVQALLRQCAHQRLMNCGKSLIMNLKKLAFML KLVILELI >gi|313656766|gb|GL545251.1| GENE 524 537179 - 538324 1261 381 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 2 381 365 738 738 367 47.0 1e-101 MFREILELKDETSNADEFMKSVKSDIFSDSVYVFTPKGDVYELAKGSVPLDFAYAIHTQV GSHAVGAKVNDKLVPLDYRLKNGDVVSILTQSNAEPSPDWIHMVKTSRARNKIRRFLKEQ RKDENIEKGRNDVANLLRERGLSAKEYLDKDHIQKLLNQLNYHSEDEMFSQVGYGEVSAI GIVNRLTEDLRKEEENKKQKELEEKILNAGQTTTEETKNITPNRAVMHVKHNNGVVIQGV SDLMLHLAKCCNPVPGDEIIGYVTKGRGVTIHRTDCRNVTDEAAKEGRLIDVDWENVGER TETFNANIEIFGYNRSSLLSDVINKLNSLTKNIKNISGKVNEENIAHIYVTITVKDSQQL NEALSRLRDIPDVYSTKRSDN >gi|313656766|gb|GL545251.1| GENE 525 538300 - 539415 1035 371 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 348 1 348 738 472 64.0 1e-133 MSKYIEMTHEEVISACKKYMNKEQLAFVEKAYEYAEKAHSGQKRASGQPYIIHPTQVAGT VANLGLDPDTVAAGFLHDTVEDTPVTNDDIKREFGEDVAFIVDGVTKLNKYEYKSHEEFL AENHRKMLIAMAQDLRVIMVKLADRLHNMHTLDHLRPDKQRRIASETLDIYAPLADRLGI GTIKWELEDMSLHYLNPEAYYNIVNQMNSKRSEREGYIDTAITYLKDTLDGLHIKYDIYG RPKHIYSIYKKMVNKHKDFSEIFDLLAVRVIVQNVRDCYAVLGAVHTKWKPMPGRFKDYI AVPKANGYQSLHTTIIGPGGKPLEIQIRTQQMHEVAEYGVAAHWAYKKVILRQLKLQVLV ENLICSEKFWN >gi|313656766|gb|GL545251.1| GENE 526 539538 - 539810 220 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854673|ref|ZP_04645003.1| ## NR: gi|238854673|ref|ZP_04645003.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 84 1 84 124 123 100.0 4e-27 MAKLQLAKNKILETSWIKKLNNYSFMPVIWWTLLLVLLAYGSSLLKIKLTWRVGFIFIVL NSLISYQVGKVITDRNLRKYWLLFYQLYSY >gi|313656766|gb|GL545251.1| GENE 527 539855 - 540613 408 252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15672085|ref|NP_266259.1| ribosomal protein L11 methyltransferase [Lactococcus lactis subsp. lactis Il1403] # 1 249 59 307 317 161 38 8e-38 MEFIAYFDQERDPDDLIKQYKSKLAELESYGLDTGKKEISYDYVQDEDWNKVWQKYYHVL NFSRHLAIVPEWENYQPEFPDQKVITLDPGLAFGTGGHTTTQLVMMALERSLTKPVKVLD VGTGSGILAIAASKLGAKSVLATDISDEAVTAANENIALNKLNNIEVIKANLLKDVDGKF DLILANILAEILFDLIPDLDKHLAPNGKVIFSGIDYLQAEKVKQRLADNGFSVKTTMQEG RWVCLLIERKPD >gi|313656766|gb|GL545251.1| GENE 528 540649 - 540798 65 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854674|ref|ZP_04645004.1| ## NR: gi|238854674|ref|ZP_04645004.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii 269-3] ribosomal protein L11 methyltransferase [Lactobacillus jensenii SJ-7A-US] ribosomal protein L11 methyltransferase [Lactobacillus jensenii 208-1] ribosomal protein L11 methyltransferase [Lactobacillus jensenii 269-3] ribosomal protein L11 methyltransferase [Lactobacillus jensenii SJ-7A-US] ribosomal protein L11 methyltransferase [Lactobacillus jensenii 208-1] # 1 34 1 34 314 66 100.0 6e-10 MKLLLIKLQTSHEIEDALTYFSQEEVKALGVEARNVVILNKLAGQMILL >gi|313656766|gb|GL545251.1| GENE 529 540864 - 541370 542 168 aa, chain + ## HITS:1 COG:SP0985 KEGG:ns NR:ns ## COG: SP0985 COG2606 # Protein_GI_number: 15900860 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 6 167 3 157 160 138 48.0 6e-33 MSKKRKKDKLEKTLVEKILDREKVPYEQKEFETHEEHGVFQMDTSILEQDQRLVYKTLAC DGNKTGPLVAVLPITEHLDLKKLAKVSGNKKCEMLPLKKLEKTTGYVHGANTPIGIHFND HYPIFLDNSMKNEDKIIVSSGKVGRSVQLNPLDLQKVVEGTFGDLLEK >gi|313656766|gb|GL545251.1| GENE 530 541445 - 542803 1384 452 aa, chain - ## HITS:1 COG:yjjP KEGG:ns NR:ns ## COG: yjjP COG2966 # Protein_GI_number: 16132185 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 50 293 36 270 277 67 27.0 5e-11 MVKEMDKVDMGHHLSNSHHMKIQWEEFFKSKDETLAKKATLVEKASIVGRVGLMILSCGT GSWRVRDSMNTIARALDITCSADIGLLTIDCTCFDVNNQSYSQTLTLPATGVNMTKLNEL ERFVRQFEAGDGNWNIGQIHRRLGEIEHLKSRYTPAIAGLAAAIACAGFIFLLGGGLPEI ICAFFGAGCGNYTRMKMGQKHITMVAKVATAVFVACVTYFLAFQLLHFIFDIRSSHIFGY IGSMLFVIPGFPFITAGLDLSKLDMRSGLERMAYALLIIIVATTVGWATALLIGIHPGDM TKLGLTPINLTIFRLIASFCGVFGFSLMFNSKINYAALTAVIGAISNTLRLSLVDYGHMP PALAAFVGVLLSGLLASFIREKVGYPRIAITVPSVVIMVPGLYMYRAVFNLGLTRISLGA YWATEAIMIVIALPLGLIAARILTDSKWRHAS >gi|313656766|gb|GL545251.1| GENE 531 542803 - 543627 623 274 aa, chain - ## HITS:1 COG:FN1377 KEGG:ns NR:ns ## COG: FN1377 COG1767 # Protein_GI_number: 19704712 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Fusobacterium nucleatum # 8 267 9 275 279 150 37.0 4e-36 MQVKYPHADLAIKALLYEVVTWPKPGLVDPVTHSSHPDMDVYTFIDSSLSLRTYFENAED LGRRYNGKLSNLFEQLRILGIQAEKEMFASTKGINTHKGAVFSLGIFVCAYSYSISNNCD VFKTIQKMTHGLVEHDLANVKVPKTAGEIEYQKYGKAGIRGQAEAGYPIISKIALPFLKQ TTGSLNERLIDTLMKIATVTEDSNFIKRAGDLDKLTELKKWSQHFLDLGGAKNNKALAYL KNLDNLFSERNYSLGGCADLLIITIFVALEEGII >gi|313656766|gb|GL545251.1| GENE 532 543798 - 545354 2101 518 aa, chain - ## HITS:1 COG:L0041 KEGG:ns NR:ns ## COG: L0041 COG3051 # Protein_GI_number: 15673173 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Lactococcus lactis # 7 518 1 512 512 712 70.0 0 MRRATTLENSIKREMPADVLEKLNLKPFESVEIGHPDVQRVAPKVHVTAGENKVVDSIED VVKATLKDGMTISFHHHFRNGDYAFNKVMDVIIKLGYKDLTLAPSSLTGVMNDKVIEAIK KGVITNITSSGMRGSLGDFVSHGGLKNPVIFRSHGNRARSIEDGEIKIDVAFLGVPVSDP AGNANGQDGKAVFGSLGYALMDAQYADKVVLLTDNVVPYPNTPASIKQTQVDYVVKVDEI GDPDKIGSGATRFTKDPKELMIAQMVNDVIVNSPYFKQGFSFQTGSGGAALAVTRYLRES MLDKGITASFALGGITKPTCDLLEEGLVKKVMDVQDFDKGAAASMAKNRDQQEIDASWYA DPHNKGAVVNNLDVAILSALQIDTNFHVNVMTGSDGVIRGAIGGHQDAANAKMTIITAPL VRGRNATVVKNVETVVTPGDSIDVVVTERGVAVNPKRQDLIDCFKKVPSIHLVTMDELQE LAEKQVGTPKKLEYTDRTVAVIEYRDGTVIDTIKEVKD >gi|313656766|gb|GL545251.1| GENE 533 545326 - 546240 1196 304 aa, chain - ## HITS:1 COG:L0040 KEGG:ns NR:ns ## COG: L0040 COG2301 # Protein_GI_number: 15673172 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Lactococcus lactis # 4 302 3 302 304 372 66.0 1e-103 MTYIKNRLRRTMMFVPGNNPAMIKDAGIYGADSIMLDLEDSVSLTEKDAARLLVYEAIKT VDFGGSEVVVRINGQDTPFYQEDVKAMVKAGVDVIRLPKTESADMIKKLIADMEKAEEEY GIEKGSIGVMAAIESAKGVLNAPSIATSTDLMMGMALSGEDYTSDMHTHRYPDGREMEFA RNMVLHSCRAAGIYAFDSVFSNMKDTEGFYRETNYIHQLGFDGKSLVNPRQIPMVNKVFN PTKEEIENAKNVQNAIREARAKGSGVISMNGKMVDKPIVDKANRVLETAKASNLIDEEGN YIGE >gi|313656766|gb|GL545251.1| GENE 534 546241 - 546534 408 97 aa, chain - ## HITS:1 COG:L0039 KEGG:ns NR:ns ## COG: L0039 COG3052 # Protein_GI_number: 15673171 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Lactococcus lactis # 1 90 1 90 96 83 53.0 9e-17 MEIKTTAVAGTLESSDIQIMIMNGSNGIEITLESDVAKAYGDQIRSVITDTLKSFGLTNA KVKAVDKGALDCVIKARTLAAAQRATQTTDKPALEVL >gi|313656766|gb|GL545251.1| GENE 535 546524 - 547579 744 351 aa, chain - ## HITS:1 COG:L0038 KEGG:ns NR:ns ## COG: L0038 COG3053 # Protein_GI_number: 15673170 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Lactococcus lactis # 15 351 5 346 346 311 47.0 1e-84 MDKVVDLYLSDPATKQRWINFLEKLDLHNFSEREVAVIDHTLGLIDEDGNLVGTGSVAGN VLKYIAVCNKDSEPGQRFNKIVTALSQYLFTQQIFHMFVFTKVKYADSFKHLGFSELART DEAAFLENGSPDVHDYLASLPKITNQAEKKVAGIVMNANPFTFGHRYLVQKASQENDLVY VFVVATDMSLFNSKERFELVKKGCAEFKNVYVVSGDSYMVSAATFPAYFLKSADTLIENQ TTIDARVFKNVIAPVLSIKHRYVGTEPFSHATSIYNDSLKRELEPGINLHLIPRLQKGDT TVTATKVRQLIKIDDLAAIEDLVPASTAEFIKANKEELQKRIQEGMKIDGN >gi|313656766|gb|GL545251.1| GENE 536 547775 - 548725 879 316 aa, chain + ## HITS:1 COG:L0037 KEGG:ns NR:ns ## COG: L0037 COG2390 # Protein_GI_number: 15673169 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Lactococcus lactis # 10 311 7 308 309 206 35.0 4e-53 MVESYDNSQLADIARDYYLSKLPITQISQKYNLSRYLIAKALEEAEASGVVHISIKSSVK RNNQLETNLRNLFGLKEAFVLKDRDTTSHDNEQIVDFAAHQIQNYSKAANEIGLTWGTTV LDTIVHFDEIKRPDLSFVQLAGMSLRTDTPHANYSLIQRAAEKFEESYVLPIPLYILNQT AHDLMEKEPAIEELHKKYQHLDLVFTGVGTLASMESNRVWGKLQDQIFSGVDQNKVAGMI FGRAYDINGQIFESVEAKLSGIKREDLLNTPIRFAIVKNKFKTHSLLGALRTHLITHLVI NEAIANKLLQEAEKFN >gi|313656766|gb|GL545251.1| GENE 537 548726 - 549517 611 263 aa, chain - ## HITS:1 COG:L34494 KEGG:ns NR:ns ## COG: L34494 COG0596 # Protein_GI_number: 15672802 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Lactococcus lactis # 3 260 4 263 267 108 30.0 7e-24 MEFKTSDHVTLHYTDTQTDLPALVCLPGIGASGQLFKRMVELLQDKYRVLVLDPRNQGLS QRTYKGQRMSRHALDLEEFLASLNLNNVIAVGNSMGASTLFAYASLFGKGRLAAMVDLDQ PPKMINDDSWNFGYQDLNWDNFPISLKYHDTVHANYVRVDPDIATPVKLERQEHPYDEEA NYKFLCDHAFQDWRDVVMDLSIPLLVLAGEKSPYFNCEFAQAMTYINDKIESHVISECGH ILQAEKPEETTKAILSFLKKNGL >gi|313656766|gb|GL545251.1| GENE 538 549564 - 550487 1199 307 aa, chain - ## HITS:1 COG:lin0242 KEGG:ns NR:ns ## COG: lin0242 COG0039 # Protein_GI_number: 16799319 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 3 307 6 310 313 291 50.0 8e-79 MSKVLLVGDGAVGSTFANDLLQNTNLDELVICDVVKDRPLGDSMDLEDITPFTGSVNVHA GEYSDAKDADIVVITAGIPRKPGETRLDLVNKNVKILKSIVKPVVDSGFNGIFVVSANPV DILTTLTQKLSGFPKNKVIGTGTSLDSARLRVELAKKLNVKVEDVNAYVLGEHGDTSFEN FDEATVAGKALTSYSEMTPEVLTAIESDVRKKGGEIIAKKGATFYGVAMMLAQIVKAVLE NKEICLPLSAPITGQYGIKHDLYLGTPTVINANGISHVIEAELSDKELSKMKNSADKMQE VLAGVAK >gi|313656766|gb|GL545251.1| GENE 539 550513 - 551649 1439 378 aa, chain - ## HITS:1 COG:CAC0566 KEGG:ns NR:ns ## COG: CAC0566 COG2055 # Protein_GI_number: 15893856 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Clostridium acetobutylicum # 8 365 12 369 369 351 46.0 2e-96 MAEGKKVKFSYDKLNMLCMDAFQKFGFNEQKARIITDVLLTADLYGIQSHGMQRMVRYYK GIQKGTMKVDAEPEVIFETPISAVVDGHNGMGQLNGHFAMDLAIKKAKEVGVGIVTVRNS NHYGIAGYYAKMAAKENMLGFSCTNSEAIMVPTYASKAMIGSNPQAWCVPADPYDFLFDA STTVVTRGKLEMYNKLGKKLPDGWALDKDGQPTNNAGEVLSNIVGHVGGGIMPLGGNTEE LGSHKGYGNGMVAEIFSSILSQGLTSDLVMKDGKAGTCHGFMAINLASFGEPEAIKKHFS EYLQALRDAPKAAGQERIYTHGEKEMAAIKDRKENGIPVIDKTMTEVYDLCQYLDLDFTK YFGDYVPPKADNMFTGNY >gi|313656766|gb|GL545251.1| GENE 540 551747 - 552286 514 179 aa, chain - ## HITS:1 COG:SPy1190 KEGG:ns NR:ns ## COG: SPy1190 COG3697 # Protein_GI_number: 15675159 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Streptococcus pyogenes M1 GAS # 7 173 9 175 192 84 32.0 1e-16 MNILEDGESVTIYDVLKNKDQRVELQNKLVLENKNWTIIGAKLNIPGPIKNNLMIENFFK YELVKFESNAPFVLTLEGNFLKKKTGPEYFYLAQEKPVNVKEYCIDFEQENKARRLFDLD VHYFKNNQIKDLGRAELGILGRGCLICGKPAKECARSRAHSVEELQKQISELIIQELSF >gi|313656766|gb|GL545251.1| GENE 541 552456 - 553394 698 312 aa, chain - ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 1 289 46 336 443 165 36.0 1e-40 MDEKTGQILYQRNATKKYAVASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDW HFSNVPLVYNERYTVRSLIESMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKN PEIYNMIGLSNGELGDLKLPKIDDNQENQFSAKDMALVSKYLIDKYPEVLNITKTKYANF KIRQDNEMKMENIIYMLEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVL DVPGEYSNQFIQTNNMIDTVFDKYQLVKVDKNNLPKKYQKITITSKKQKRKFQLYLKRIL PFGFKKNKTYQV >gi|313656766|gb|GL545251.1| GENE 542 553640 - 555094 1958 484 aa, chain - ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 7 484 5 472 472 445 53.0 1e-125 MKHLEKVNYKGFIIPIIVGLIFWFTTPIRPAGVTVQAWHMLAIFLATIMGCIFKPLPIAA TTLIGYTLTVFLGLAPIKDVIVKGHTVDASALTAFSNSAAWLIAMAFMLSRGIIKTGLGK RIAFYFIEWFGHKSLGLGYAVAAIDLVVSPATPSNTARAGGIVFPLVESLAENFDSKPND PSRKKMGAFLTFVEFHANLITSMLFLTAMAPNLVAVELAKALGVNITWIGWFEATCVPAL IALLVVPFFIYKMYGPEIKETPNAKEWASAELKKMGKLSVPEMCMAGIFLLTLILWMLSS SIKLDATLIAFISMSLLLLTGVLSNDDFLTEKGGWNVLVWLSILVYMANRLTKFGFIKWL SDTISKSVGHESWIMVVIILGILLFYTHYLFASATAHNTAMYGPFLAVALSAGAPKMTAA MFLAMFSAIMASTTHYANGPASVLAGSGYVEQGEWWKMNFILGLFYIAFFIVFGLGWMKI IGLW >gi|313656766|gb|GL545251.1| GENE 543 555446 - 556780 822 444 aa, chain - ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 4 443 5 444 472 441 57.0 1e-123 MAKVNYRGFIVPVVVGVLLWLLTAVRPTGISVSGWHLFAIFLATIIACITKPLPIVGVAI ISYVLILLTGLVKMKFALTAFADSTPWMIAMAYMIARGFVKTGLGRRIALIFVRNFGKKT LGLGYSLSLIDLLVAPATPSNTARSGGIVLPIIQSLSETFGSKVGDGTEKKIGSYLVYNE FHANTISSSFFMTASAPNVAAVGLAEANGVHISWFEWLFAALVPGLIAFLVVPFIIYKMY PPEIKETPNAKQWADHELEKMGKMTIAEKLMLTIFVLALALWMVSSFIGLDATLVAFLAV ALLLLSGILTTDDLLHETGAWNVVVWFSILIFMASQLSVHGGVIHWLQLFIKHSIKGMNP MLVMAILVLVYFYTHYFFASGTAHVVAMYAPFLLIAQGEGVPVMFAAIMLGITGAIYQST THYSCGPATALFASGYVKQTDWWK >gi|313656766|gb|GL545251.1| GENE 544 556958 - 558349 2102 463 aa, chain - ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 10 461 54 504 506 437 53.0 1e-122 MAKFVFTPKDSSEIAESYDAVIVGAGGTGLTAAMQAHELGLKVAVFEKNEGLGGNTNKAS SGMNASESNVQFAQGIIDNKEDFYKETLKGGGLLNDRDMLRYFVDHSAVAISWLEDHGID LTDLTITGGMSKKRAHRPASMAPVGGYLVTGLLKKIQEEDIPVFNKAKVTKLVQTGKAVT GIEVETESGLKKVAAKAVLLASGGFGASKEMMKKYRPDLVDYKTTNQAGATGDGLKLAEA VDAQLMQMEYVQVHPTAQTDGARTFLIGEAVRGEGAILVNRAGKRFVNELNTRKIVSNAI TGLNEDGAYLIFDQGIRDHVKAVEFYDAIGLVKHGASLAELASEIGVDSSNLEATVKTWN EAVKAADDSEFGRTTGMDRGIEKGPFFAIHVHPAIHYTMGGIHITPETKVLDTNGNVITG LYAAGEVSGGLHGNNRIGGNSIAETVIFGRQAGIQMAKFIREN >gi|313656766|gb|GL545251.1| GENE 545 558367 - 559770 1983 467 aa, chain - ## HITS:1 COG:lin2328 KEGG:ns NR:ns ## COG: lin2328 COG0114 # Protein_GI_number: 16801392 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Listeria innocua # 7 460 3 455 455 454 53.0 1e-127 MAEQEYRIESDTIGPVKIPKEALWGPQTERSRNNFPSGELMPLQIIRAFLHLKKAAAQSN VEVGDEPEEKGKAIEDAIDHLLSLSDGELRKDFPLHVLQTGSGTQSNMNVNEVVANLANK LHPGLNILPNDDVNRGQSSNDTYPTAMNIVAVEAIDKLELAIEHLINELKEKQNKYWKTV KVGRTHLQDATPLTFGQEVSGYISALKHDLAYIRQLKPTLYELAIGGTAVGTGLNAAPGM TEKIAGKLSKVYGHEFKVDTNKFWGLAHHSGIDVMHGALKTLAADMFKIAQDIRFLASGP RAGYNELNIPANEPGSSIMPGKVNPTQAEAVTMAAAKVFGNDTTITFTASQGNFEMNVYK TVMIAAFLDSCDILTGTITGFADRMIHGLTVNADRMDDLLENSLMTVTALSPHIGYHEAA TIAQTADKEGTTLREAALKSGKVTEEQYDEWMDLLKMTNIDRSKPED >gi|313656766|gb|GL545251.1| GENE 546 559943 - 560644 929 233 aa, chain - ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 231 1 231 231 231 63.0 7e-61 MINLLQQYLPNVFSLGWSGDAGWGTAIFQTLFMTFWSAIFGGFLGLIFGVILVLTEEGGI LANKFWYNLADKIVSIFRAIPFVILLAFIAPVTQKIVGTQIGIKAALVPLTLGVFPFYAR QVQVALKGIDPGKIEAALSLGATTKDIIFEIYLKEARSELIRVSTVTVISLIGLTAMAGA IGAGGLGNTAISYGYNRFNNDVTLVATILVIILIFITQVVGDLLANKFNHQVR >gi|313656766|gb|GL545251.1| GENE 547 560637 - 561695 1087 352 aa, chain - ## HITS:1 COG:SPy0320 KEGG:ns NR:ns ## COG: SPy0320 COG1135 # Protein_GI_number: 15674484 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 2 344 4 350 354 323 52.0 2e-88 MSIIELNNISVTFKQKKETIKAVDGVTLKIQKGDIFGILGFSGAGKSTLVRTINLLQKPS AGDVIVQGTSFVKNGQVAISGKELQKRRRKIGMIFQSFNLLNETSVLENVAFALRHSNLS DEEIEEKSLRLLELVDLKEKADFYPSQLSGGQKQRVAIARALANDPEILLSDEATSALDP QNTNQILDLLKKLNKELGLTIVLITHQMEAVKKIANRVAVMEHGHLIEEGSLKQIFLEPK KELTRNFVGGSSAAISTLNKLNLDKLSENEAIYQLTYSLSNVTKSIIIELYSKLGVEVSM LYGNVELLNEEPIGTLVVLLKGDLEKQKAAREFLAQENVLVTKLDERGQVND >gi|313656766|gb|GL545251.1| GENE 548 561705 - 562556 1126 283 aa, chain - ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 30 283 31 286 286 266 59.0 2e-71 MKKKRRKNRIIASIFAIFLLVAGYFSFVYQAPKENTKTVTIGVVGQTKEDAKIWDSVAKA AKAKYGITIKIKNFTDYNQPNKALLNGDIDLNAFQHFAFLDAWNKANKANVVSIGKTIIA PIRLYSLKYKSIKSLPEGATIAVPNDASNESRALYVLKNAGLIKLKSGKKIVSVADITSN PKKLQIKEVAADQAGRIIKSVDAAVVNNSYAAPAGLGDKQTIYVEPVNKDSEQWINLIAA RNSDKNKQIYLDVVKAYQTKKTKELVKKYYGNTELTGWDIKIK >gi|313656766|gb|GL545251.1| GENE 549 562952 - 563317 556 121 aa, chain + ## HITS:1 COG:L153973 KEGG:ns NR:ns ## COG: L153973 COG1970 # Protein_GI_number: 15674083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Lactococcus lactis # 1 121 1 122 122 119 54.0 1e-27 MIKEFKDFISRGNVLDLAVGVIIGSAFTSIVNSLVTNLLNPFLGLFLGKIDLSNLILKVG GASFKFGSFINSIINFLIIAFVVFLIVKSVNKLMPKPEKKPAGPTPEQEYLREIRDLLKN K >gi|313656766|gb|GL545251.1| GENE 550 563431 - 564036 578 201 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0843 NR:ns ## KEGG: LGAS_0843 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 5 201 23 244 244 107 38.0 4e-22 MGNFFLWIFLSIIGYFIAKKWLFKAQPHSIRIYAVVFSISALGLAVTTHPTTKPTTHYLV KKVKADNFSSNKAANESLSAEKSSLQEQANQLKEQVSSAEEESDAIASSKEAQSSKAAAK AQAEAESSSIAQAKAQEPKQNTSKTNQGDLNTATTGRIVGNAHSKIYHVPGQAGYRMNSA NAVYFNSEQEAIAAGYRRAKR >gi|313656766|gb|GL545251.1| GENE 551 564036 - 564899 754 287 aa, chain + ## HITS:1 COG:no KEGG:LAF_1832 NR:ns ## KEGG: LAF_1832 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 43 286 48 291 292 310 63.0 4e-83 MKNKKLLISILLTILFFGAGINGNLNSTQESQKPKVITKVKYDKSEVKKSDQLDDENSEL SDDIQELKTQIRDYKKALKKLGKTAQTDSAKTETASANLASLNYSGKDIITVNNNNPSFT KSDLSTANGAWQSYGDLDNLNRASAANALLNVSLMPTAKREPLHVNPTGWHNKKISGGWL YNPCHLIGYQLTGQNNNWKNLITGTRQLNDPDMLKYENEVANYVKQSKHHFVRYRVTPIF RGTELLARGVQMEAQSTGENTVHFNVYIFNVQPGYNLNYSDGTSQVA >gi|313656766|gb|GL545251.1| GENE 552 564958 - 565887 1033 309 aa, chain - ## HITS:1 COG:SPy0510 KEGG:ns NR:ns ## COG: SPy0510 COG0463 # Protein_GI_number: 15674614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 1 308 1 307 308 348 54.0 7e-96 MDKLSIIVPCYNEEESIPLFYDAVQKVVTKMDIEPEYWFVNDGSHDNSLSEMRALHEKDE KHVHYISFSRNFGKEAGLLAGLDAATGDYVVVMDVDLQDPPEFLPEMYKELQSGEYDCIG TRRVDRTGEAKIKSFLSDMFYKCINKISNTEIVPGARDFRMMTRQMVDAILSMREYSRFS KGIFSWVGFKTKYLDYHNVERVAGESDWSTWQLFKYAMDGISDFSQAPLSLAVWTGSVTS AISVISIIFIIIRKIMSPMSSIFGWASMVSIILFLGGIQLLCIGIVGKYIGRIYLQVKHR PIYIVKEKK >gi|313656766|gb|GL545251.1| GENE 553 565984 - 566400 395 138 aa, chain - ## HITS:1 COG:no KEGG:LJ0167 NR:ns ## KEGG: LJ0167 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 8 135 7 133 145 130 58.0 2e-29 MIEKIISLIKSDDFREFVIYGFIGVFGLFIDFGLFWLLTKFTALPVEVANFISSSCALVN NFYMNTYLNFHVRDHLLSRFIKYYIIGQITTLITTTCLFIFVTLMHQNEMVVKVISTFLA TMLQFVVNKVFTFKKEEL >gi|313656766|gb|GL545251.1| GENE 554 566410 - 566913 472 167 aa, chain - ## HITS:1 COG:lin1987 KEGG:ns NR:ns ## COG: lin1987 COG0262 # Protein_GI_number: 16801053 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Listeria innocua # 1 166 1 159 160 125 41.0 4e-29 MISFVWAEDNQHQIGYQGHLPWHLPADLAHFKEKTMGKTMVMGKNTFLSLPFVLPKRKHL VLTHDEALIEKFQNNSQVDFVTSMKQLREYLSAHKEEQIAVIGGVSVFEGLKDIVDCLEK TEIDGIFKADTTMPAIDYSAFKLIKRETFTADENNPYDYSFLTYLRK >gi|313656766|gb|GL545251.1| GENE 555 566923 - 567879 981 318 aa, chain - ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 8 318 4 314 314 414 60.0 1e-115 MAVLEQPYLDLLKNIMETGHDKTDRTGTGTRSKFGAQMRFDLSQGFPLVTTKKVPFGLIK SELLWFLRGDTNIKFLLEHKNHIWDEWAFKNWVNSPEYQGPDMNDFGLRSQKDADFKKLY DEQMKLFTERILSDEAFAEKYGNLGDVYGAQWRHWKKRSGGSIDQIQDVLNQLQTHPDSR RMIVSAWNPEDVPTSALPPCHTLFQFYVADNKLSLQLYQRSGDMFLGVPFNIASYSLLLS LVARQTGFEVGEFVHTLGDAHIYKNHFDQVEKQLARDPFDSPKLWLNSAKKNISDFEMED IKVLDYKHHGVIKAPVAV >gi|313656766|gb|GL545251.1| GENE 556 567986 - 568858 998 290 aa, chain + ## HITS:1 COG:MTH692 KEGG:ns NR:ns ## COG: MTH692 COG0330 # Protein_GI_number: 15678719 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Methanothermobacter thermautotrophicus # 30 283 27 293 318 137 33.0 3e-32 MIFSISTLLIAIIVVVLIIFSCSIVPQNYEGLVETLGKYSKTEKAGLIFIIPLIQRVRKV SLALQPLEISKYSIITKDNAEVSTSLTLNYQVTDSFKYFYNNTDSVESMVQLVRGHLRDI IGRMDLNDALGSTSQINAQPADAIGDLTNVYGIRVIRVNVDELLPSKEIQRAMDKQLTAD REKTATIAKAEGEARNIELTTKAKNDALVATAKAKAEAIKTQADAEKYRIEQLKAALADA PDDYFKNQSIAAFKDLAKGENNLIVMDKDNLTQLGNIPAVREIWKKQDQD >gi|313656766|gb|GL545251.1| GENE 557 568913 - 570295 1636 460 aa, chain - ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 3 459 2 455 459 459 56.0 1e-129 MAENNAPKLKRSMTAGQMEMISLGGAIGVGLFMGSTSTIKWTGPSVLLAYIFVGLILYIV MRALGEMLYVNPGTGSFADYATEYVHPLAGNMAEWAAVFQYIVVGISEVVAATEYLKFWW PKTPALLVGIIIIGFLLLANLASAKAYASLEFWFSMIKVVTIVLMIIVGLLVILLGLGNN WKPVGFSNLWSHGGFFTGGLKGFIFSMSIIVGSYQGIELIGISAGEVANPKEAVVKSVKS VLWRILIFYVGAIFVIVSIYPWNQLSAIGSPFVETFTKVGITGAASIINFVVLTAALSGA NSGIYSSSRMLFKLANEGDAPKIFGKISKKIVPSKAIVGITSGILIGFVLNFILSTINKT MDEIFVIVYSSSVLPGMVAWFVILLAEYKFRKHNPEIMKKHPFKLPLYPYSNFFAFAILV LIVFFMFLNDETRVSVTVGALVLLASATEYYFRRMHKKNK >gi|313656766|gb|GL545251.1| GENE 558 570282 - 571646 1310 454 aa, chain - ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 442 10 451 459 456 56.0 1e-128 MSAGHMEMISLGGAIGVGLFMGSTSTIKWTGPSVLLAYMFVGLILYIVMRALGEMLYVNP GTGSFADYATEYVHPMAGYMAEWANVFEYIVVGMSEVVAATEYLKFWWPQVNVFWSGVII IAFLLLANLASAKAYANLEFWFAMIKVITIVLMIILGFLVIFFGFGNGGHPTGFSNLWSH GGFFTGGIKGFFFSMSIIVGSYEGIELLGISAGEVENPKEAVVKSVKSVLFRILIFYVGA IFVIVTIYPWNQLSSLGSPFVTTFAKVGITAAASIINFVVLTAALSGANSGIYSSSRMLF KLAHEGDAPKMFGHLSKHIVPSKAIMGISSGIFLGFVLNVFASQFSKSTEDLFVIVFSSS VLPGMIPWFVILLAELRFRKHNPELLKNHPFKLPLYPFSNYFAFVMLLVIVGFMFINNET RVSVIAGLLVMIVAAIVYISRHGLKVGGDIHGRK >gi|313656766|gb|GL545251.1| GENE 559 571789 - 572475 553 228 aa, chain - ## HITS:1 COG:BS_ydfK KEGG:ns NR:ns ## COG: BS_ydfK COG1811 # Protein_GI_number: 16077612 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, possible Na+ channel or pump # Organism: Bacillus subtilis # 1 216 1 215 229 138 40.0 1e-32 MIGILINGLAVIFGTAIGCLFKRHLKEKYIEALWLALGLAALGVGINTVVNYMNKSNFPL LFVVSLTLGTLIGKLFEVDQHVENLLETKFTSELAKGVATATFLDCIGALSLLGPINAAK TGDLTFLLTNASLTFVCAIIFGASFGWGMLLETPILLGWFFLIFGLVKVGFASFFSMELV NELCLVGGFLITASGISLLKIREIKSLDLLPSLLIPVLYFLGKMIFHY >gi|313656766|gb|GL545251.1| GENE 560 572662 - 574200 1721 512 aa, chain + ## HITS:1 COG:no KEGG:SMU.739c NR:ns ## KEGG: SMU.739c # Name: not_defined # Def: hypothetical protein # Organism: S.mutans # Pathway: not_defined # 1 508 1 507 518 345 56.0 4e-93 MKRKKLKFVSIPLIALAIAGETVTISSQVVNAANSTPPAMPSGSKKGGANTQSYDYTGSL SASVLVNSTSRKLLNKTYTSSSKDKNVALVKNAGSLTLNHVTLSKTGSSSNDDNNNFYGT NSVLLATGKKSTAYIKNSKIKSNAKGANGIFASNKATVYANNTSITTTGSANSRGLDATY GGTIIANKTNISTKGDHSAALATDRGGGNVSVTNSKLKTAGSGSPLIYSTGNIEVNNVTG SASGSQIAGMEGYNNIYISNSKLVSTNNNKTGSDPIKNGVILYQSMSGDADTSTSKAAKF QAVNSSLSTSIDSGAMFYVTNTRANVVLKNTKLNFNSKKVNLLTIAGNNSNSWGSAGSNG AKVIFTGIKQKLDGNISVDNISSLKLYLLKNSTYTGKTTITTNSKATSSSKTSAPITINI AKDSKWIVTGNSTVSNLNIESGAKIVDKSGKTVTIVNSSGKTLVKGSSKYKITVKGTYSN KVTTSSANSLSKSSVSRTSFDKYFNTNTKITY >gi|313656766|gb|GL545251.1| GENE 561 574441 - 575352 286 303 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 5 297 6 319 319 114 26 1e-23 MTQYLAFDVGGTNLKYALLNNSGEIIEKDRTSTPTDNINNFMAKIYEIADKYVGKFEGIA ICAPGKVDVQKGIVYFGGALPFLDQTNFKELLENRYHIPVGVENDGKAAGLAELWLGELK GIDNGMAVVLGTGIGGGLILNGKLVRGSHFQAGELSFMHTDSSKYGFESFVCDKGSAVSM VKKVNQAVGNQDVKDGLVAFDAIKEQNPAAVKIFKRMCREIAVLITNIQAVADLDKIVIG GGISAQPIVVEEINRQYDQLVDEVEFVKKMLTKPEIVRARFMNDANIYGALYALLLQINH EKY >gi|313656766|gb|GL545251.1| GENE 562 575406 - 576890 1549 494 aa, chain - ## HITS:1 COG:CAC1405 KEGG:ns NR:ns ## COG: CAC1405 COG2723 # Protein_GI_number: 15894684 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 10 494 7 473 473 525 54.0 1e-149 MNESVFPKDFLWGGATAANQIEGGYNEDGKGLSVTDITTAGSLKHPRMLTYTLNGKPGKT PALPGAGLPEGAVGAIDPNEYYPNHVAIDFYHHYKEDIKLFAEMGFKTFRLSIAWTRIFP KGDEKEPNQAGLDFYRRVFEELKKYNIEPLVTISHYEDPLYLSEKYHDWQDRKMIDEYVK YATVLFKEYKGLVKYWLTFNEINSAVLMLNMFSQHAGDDSAFQHAYQKLHYQFVASARAV KAAHEIYPNYMVGNMICGIVSYPLTPDPKDILACRHSWEQNIYYCGDVQALGEYPSFAKR LWNEHNVHLDITDQDLADLKAGKVDMYTFSYYMSTVVTTHEVKDTVGGNFSAGAKNSYLK YSEWGWSTDPEGLQYYLELMNDRYHLPLMVVENGLGAVDKMTADHKVHDDYRIDYLRQHI SAMKDAIKDGVNLIGYTTWGCIDLVSAGTGQMSKRYGFIYVDRDDQGNGSLKRYKKDSFD WYKKIIASNGEDLD >gi|313656766|gb|GL545251.1| GENE 563 577031 - 578263 1179 410 aa, chain - ## HITS:1 COG:SP1600 KEGG:ns NR:ns ## COG: SP1600 COG0477 # Protein_GI_number: 15901440 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 16 378 9 362 383 124 26.0 5e-28 MSKNISKFHYALIVLALLSLNIVEQAASVINATIPGMKGTFSNQSLVNIELITTIVSMFV TIFVLISGFVVKQIGQKNTAILGLAIASISSIIPAFLNDFNIIIISRAILGAGIGLANPL AISLIGVFFYGDQRAKLMGWRSAIAGLGTALMTFIAGQLLVFSWHASYLVYLLFIPTLLL FIFFVPDPVKSGAIKRQEQEQKKELQKAANEGNEVQQDSIALIAELTLLIFLGLVSAMIF FVKLPTFFVENNIGSPTQASNVLSLINISNVIGGFIFGICYKKLKKFILPFALGIGGIAT CLISISRNMWVITIISILYGIVCSLSIPYIFNRISEVSSAKKAPFFTSIALVGSNLGSFL SPIIANYLGTQSSTVIFNAGLINIVTGVVTLIVIIATKERRHHVHQKLVK >gi|313656766|gb|GL545251.1| GENE 564 578292 - 579572 1060 426 aa, chain - ## HITS:1 COG:no KEGG:LPST_C2844 NR:ns ## KEGG: LPST_C2844 # Name: ram2 # Def: alpha-L-rhamnosidase (putative) # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 411 101 511 528 523 59.0 1e-147 MDAPLTLKIRFAEMPNEFKYNSKDYNGWLSKSWMQEELIHVDNLPVDLKLPRRYSFRYVE IRVVDTSPKWSVKFSDPRVISQSAVNKVQIPKSKFDDNELDKIYETGVNTLHDCMQDVFE DGPKRDRRLWLGDLRLQALANYASFNNTNLVKRCLYLFAGMTAEDGRISANVFTNNKYIP DDTFMYDYGLFFISTLDDLLKHEFNQEILDDLYPIAKKQWDYDQKFISDDGKVITDKDYI TFVDWSQDFDKNTSAQAITIFVLKQLIDLAGMAEDSEKLKYENQLNKLVNYAENKLFDHK KGLFISGPNKEINVASQVWMVLAHVLDNEQNHALMKKTQTELFPIKGIATPYMYHHVTQA LFEAGFREAGIKLMKEYWGKMISLGADTYWEAFEPEHPNFSPYGNAMVNSFVTHGVVHLF GYLISI >gi|313656766|gb|GL545251.1| GENE 565 579865 - 580443 498 192 aa, chain - ## HITS:1 COG:no KEGG:LPST_C2845 NR:ns ## KEGG: LPST_C2845 # Name: not_defined # Def: sugar transport protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 2 187 239 424 425 244 69.0 2e-63 MFISIMIFYICWNLLANTFGQFETFMLVNAHASQSLATGAGLVLNFVSLFATMAFAKCAG SKYRNWFFIIGMTIQFLGMFSLAALSHELWPIIFAIGFMSIGSNIAGEAIYKVWTQEAFP MSVRSSIQGFIGGFSRFLCGLFAFITPALVVQSVIKTTMFGFSGMVVIAFLFGLNMVRLE KKYGIQSENKRK >gi|313656766|gb|GL545251.1| GENE 566 580425 - 580652 87 75 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2198 NR:ns ## KEGG: Lbuc_2198 # Name: not_defined # Def: major facilitator superfamily protein # Organism: L.buchneri # Pathway: not_defined # 1 75 162 237 418 67 43.0 3e-10 MAGATGARVVFACLGILALLIGVWRTFSRKFKTLHQEGNKHQVSLSNNKTTGKQSTLNVL FGKNKRNIYLCLLVL >gi|313656766|gb|GL545251.1| GENE 567 580625 - 580891 137 88 aa, chain - ## HITS:1 COG:no KEGG:LPST_C2845 NR:ns ## KEGG: LPST_C2845 # Name: not_defined # Def: sugar transport protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 78 87 164 425 104 64.0 1e-21 MNFLFAIGAFVCVLAPNYLALLVGSIIAGFASGADLPISLTMISHDSPDEKTSSKLIAST QIFWQIGVLGSYGAAFLVLRWQAPLEQE >gi|313656766|gb|GL545251.1| GENE 568 580915 - 581148 372 77 aa, chain - ## HITS:1 COG:no KEGG:LPST_C2845 NR:ns ## KEGG: LPST_C2845 # Name: not_defined # Def: sugar transport protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 11 76 11 76 425 97 80.0 2e-19 MKSTINEIESIDKYKPLAIAAGLGSVLGSGIIVGMSATITVWQLGLNLNNGQVGIISGAL TFAIAIGSLIAGEITKK >gi|313656766|gb|GL545251.1| GENE 569 581252 - 582289 541 345 aa, chain + ## HITS:1 COG:lin2983 KEGG:ns NR:ns ## COG: lin2983 COG2207 # Protein_GI_number: 16802041 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 52 325 47 325 326 129 32.0 7e-30 MLDKKIEKKILSITTVEQEQLNNNGINICDVKLDNNEEFKKHPILRMPFWNFFDFGRISI TKSNRFSYIPAHKHKFIEINYCFSGRSIQYIDDHIIELHPGELIIMDREIQQRINYARKQ DILINILIRDDYEISNLLNGINKNSILIKFLKNATQNYFNHHNFIIFDTNQDIVCKQIIE NIISIGFNNHGKNETILEALLKSFILCCNDQLIIKKQINFTEQKNNTFEIIQYINENYQN ISLRKTAETFGYSTNYLGNLLTKETGHSFKEILLMRRLNIACNLLQTTDYSIEEISSLVG YENHSSLFRLFKQQLGIKPQEYRDRIRYPVHLSDKKEFLPNPYFK >gi|313656766|gb|GL545251.1| GENE 570 582349 - 583200 914 283 aa, chain - ## HITS:1 COG:no KEGG:LBA1470 NR:ns ## KEGG: LBA1470 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 280 229 508 510 529 90.0 1e-149 MGLENNLHYLKYVIARLASYKNVWWALANEFDLMDLVGQIPLGDWDKIGQFVHEKDPSDH LESIHNFYDPPQHKDTIKNWYDQTKPWITHVSVQSDNVFLIPKWIEEYQKPVVDDECRYE GNIEFGWGDNTAQGMMDNFWRVVLRGGGCTHGETYIDKPNTNRPIWWAHGGKLYGESHKK INFLSKLLKDNGFDWVRPQATSGPTWELAVGSTPDEKKWLVYFGENQPEFELFSFLPKGK KYNAKLINAWDETIQDFDGEITNDEKFHLPRKEYQAMLLTGKD >gi|313656766|gb|GL545251.1| GENE 571 583287 - 583883 449 198 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01582 NR:ns ## KEGG: LCRIS_01582 # Name: not_defined # Def: glycoside hydrolase # Organism: L.crispatus # Pathway: not_defined # 1 173 1 175 512 288 79.0 1e-76 MKQVEKWKRYELTLNGPEDGNPFRDVELTATFEHNNHSVKVDGFYDGNGVYKVRYMPEVE GQFQVITHSNVKGLDKVTDEFLVTPAEKDNHGPVRVAGKTHFSYADGTRYIPFGTTAYAW TTQPEKIQEQTLETLKDNSFNKIRMLVFPKSYDYNTIEPEIYPFEGAPKVLRAELTGYLM LKIQDLILQDLCQSISKI >gi|313656766|gb|GL545251.1| GENE 572 583896 - 585113 1108 405 aa, chain - ## HITS:1 COG:SP1600 KEGG:ns NR:ns ## COG: SP1600 COG0477 # Protein_GI_number: 15901440 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 17 390 7 376 383 80 22.0 4e-15 MDVESIKQNNKHNWKLKIGILGISLFLQVAGSNLAAIPLIAKSFPNQSITSIQALFTIPS FTIMLFILFSNAFIRWFGKRNTVIIGMLATIVGGLIPFFINNFSLIVFSRLLVGAGIGLF TSLAVSLIGDCFSGDEQKTLIGIQGAMGTLGNSSCTFISGLLLGINWQSTFLYMLIIIPF LILFMMGYTRKMEAATTVEAVHKNNEKGKSKVKIPVRIYVAFLMLFLFFAAFMVEATGSA LVIQENQLANQGVLSTEIAIAGLIGAVISMGYSKIYKLLHSFTPVVSTIGGIIGFIICSS ASNMIIFFIGLIFMMISSLIIPYVYDTILSDVDSSISNLIISIAQVCNNLGAFASPFIIS FLAKMMNATTPVDQMKISAGILTIITIVFLGIALTSQHVKKHVSI >gi|313656766|gb|GL545251.1| GENE 573 585314 - 586270 616 318 aa, chain + ## HITS:1 COG:BS_rbsR KEGG:ns NR:ns ## COG: BS_rbsR COG1609 # Protein_GI_number: 16080644 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 2 318 3 323 326 159 31.0 5e-39 MTIKEIAKLAGVSTATVSRIINNSGKVKEETRIKVQNIIDQNNYRPNQVARTLFKKKSNI IGIIVPDLSNMFYSKIIEGIQNIIDNTNYSLMISFSAGSDDKKYIDFIRKFQQENVDGII TSAFSGEYVTKIKTPIVMYDSANIEDNIIRIASDNKAGGKLISKFLNKNIKKVLIQHLDL SLPTVAERFNSLIAELNKRDITYNLVAVEGLSKKHASQKVLENIKHFDAVISVNDEYAAD IIKESRLNGFKIPEDFQLVGYDNTNLAQYTDPTISTIDQQAFEIGKAAARRLIDRIDGNK NTENTIIPVKALKNESTK >gi|313656766|gb|GL545251.1| GENE 574 586319 - 587206 786 295 aa, chain - ## HITS:1 COG:CAC2917 KEGG:ns NR:ns ## COG: CAC2917 COG0657 # Protein_GI_number: 15896170 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Clostridium acetobutylicum # 29 286 34 266 272 152 34.0 7e-37 MKYFNKNFGDIGASATFYLQEANKEIDINRKSPVMIIVPGGAYMWTSWREEEPIALEFLS KGFSCVVAKYATEGLEFFHDKNNDFSKEPVSSFPNPLMDLARIISYTRSKAEEWNLDPDS INVLGFSAGGNLTAQIGTYWKKDWLQKLVKLDPETYKPNSIAISYGASQTYIADTKSEIS KLVNYASLGHDQSIERQKLINVIDADTSDCPPTFIWHTMQDPLVPVENALKLASNLRKHD VDFELHIFEKGKHGLALGDLRTDSKKDRSQSNIQARKWVDLYLTWLTEHKLIHLF >gi|313656766|gb|GL545251.1| GENE 575 587216 - 588562 1248 448 aa, chain - ## HITS:1 COG:L90678_3 KEGG:ns NR:ns ## COG: L90678_3 COG2190 # Protein_GI_number: 15673442 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Lactococcus lactis # 298 444 19 164 166 132 44.0 2e-30 MLTVNGKYLYKDGQRFFYLADTCWSAFTNLTLPDWKFYLDTRKAQGYTAIQINLLRQYDS SCPIKGREPFAIIEHDDGSYEYDFSKINTSYFDNVEKMLEQMQERGMVPSLVLLWGNFVP DTWMSHFVKNNTIPFEQIRPYIKYVVNRFKKFNPIWFVSGDVGFVDNETQKSEAAIKYYR EVLESAKEVDPEGIYTFHINGESYELPDEFKKRISFFSYQSGHAQTGQNTAFTIPQKLRA SGYEGPIVDAEICYEGLQKMHSQYPERYSAFEVRKSAWRAVLAGADMGVGYGSFGLWPLK ELDDGVFSTGAVGQGVAVSLEKGEVKAPFDGTVVSVFPTKHAITLKSKSGVELLIHIGLD TVELKGKGFKQLVHDGDAVRKGDLLETVDLDLIKEAGFNLASPVIVTNPANFDKVASQTQ GHVQAGDQLLLATVDQAKTEKVSSVSLA >gi|313656766|gb|GL545251.1| GENE 576 588577 - 589317 751 246 aa, chain - ## HITS:1 COG:TM0951 KEGG:ns NR:ns ## COG: TM0951 COG2407 # Protein_GI_number: 15643713 # Func_class: G Carbohydrate transport and metabolism # Function: L-fucose isomerase and related proteins # Organism: Thermotoga maritima # 32 220 267 462 471 60 26.0 3e-09 MGYIQIKDDDFNKVAALKLALQDKMNQYGCNAGTIQCWTELQREIGILPYASEALLQTEG MPVTCETDINGAISEVLAESATLGEERAIFADVNCRHPENENGELLQHLGTFAFQTAKNK PVLPPSHFVFDYPGSAAFEAKDGNYSLVRFDGDHGKYSMLIGNAETCQGPYEQGTYAWFE FKDLNRFEAKYVYGPYIHHMAGVRADIVPILAEAGKYINVKPDYFDPIADKVAAYWYGDI NSIIDD >gi|313656766|gb|GL545251.1| GENE 577 589260 - 590021 722 253 aa, chain - ## HITS:1 COG:YPO3311 KEGG:ns NR:ns ## COG: YPO3311 COG2407 # Protein_GI_number: 16123464 # Func_class: G Carbohydrate transport and metabolism # Function: L-fucose isomerase and related proteins # Organism: Yersinia pestis # 19 228 17 231 474 82 29.0 9e-16 MVNKKFLEQIKLGFAPTRRNIFSADAAIEFANKTRAKLDELGVNYVDIKDVNDDGLLYDD AGLAKITKKFKEENIDGLFIANENFGTEYEVARLAAKLNVPVLLWGPRDEAPAPDGSRRR DTQCGLFAIGKVLRHFNVPFTYIRNSDIDDPSFSRGVIDFIRVCNVVKTFKHTRLLQVGP RPFDFWSVIVNEGELLEKFGIQLSPIPLGELTSHMNNLIEEKDSRIEETKDVFRKWATFK LKMMTLIKSQLLN >gi|313656766|gb|GL545251.1| GENE 578 590128 - 590376 273 82 aa, chain - ## HITS:1 COG:ECs3570 KEGG:ns NR:ns ## COG: ECs3570 COG1609 # Protein_GI_number: 15832824 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 82 252 332 337 63 36.0 7e-11 MALRFIKELRKYKIKVPEEVAIIGFDDISEDTMILPELTTIHVPITQMVDQAVNQIFAQI DNKEWLTQKTLVSTKLIKRQSM >gi|313656766|gb|GL545251.1| GENE 579 590493 - 590939 405 148 aa, chain - ## HITS:1 COG:no KEGG:LBA1488 NR:ns ## KEGG: LBA1488 # Name: rbsR # Def: ribose operon repressor # Organism: L.acidophilus # Pathway: not_defined # 1 127 67 194 337 148 57.0 6e-35 MVSDKKGILNRNYASLPFFDTLVADLTQNVSGFGGKLQITTISSENLKEEILELKASVKA AIVLATDLDEKQVTFINENLKHVVFLDTYYENIDADFVSINNKQGAYLAGKYIAEKGYTD IGYVASNKLFLTSCIEEKALEKQFMKLT >gi|313656766|gb|GL545251.1| GENE 580 591272 - 592105 973 277 aa, chain + ## HITS:1 COG:TM0954 KEGG:ns NR:ns ## COG: TM0954 COG3959 # Protein_GI_number: 15644626 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase, N-terminal subunit # Organism: Thermotoga maritima # 2 275 8 281 286 279 49.0 4e-75 MEILDLKKKAVQLRKRTWELIYKHHNGHTGSDLSCTDILVALYYDVMNQNAKNFGQKDVD TYIQSKGHAVEIWYEILADLGYINQKDLDERYSTFNSPYIGHPTTEVHGMAFHTGSLGHG LGLGVGVSLAAKMNHSQKHIYVLMGDGEQAEGSIWEAAMAAGNYSLDNLTAIVDHNDLQI SGTTDSVMRSNPISDKYRAFGWDVQEVDGNNMEALVNILNKANNTNKPRLIIANTVKGKG ITVAENRADWHHKIPSPEEYEQGIKQLNAQMEALENE >gi|313656766|gb|GL545251.1| GENE 581 592098 - 593042 939 314 aa, chain + ## HITS:1 COG:TM0953 KEGG:ns NR:ns ## COG: TM0953 COG3958 # Protein_GI_number: 15644625 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase, C-terminal subunit # Organism: Thermotoga maritima # 7 308 2 303 311 258 44.0 1e-68 MNKIDEKLTANQAIANCLDEETKNDPNLLVVTCDSRGSAGLVPFTNKYPDRTVEMGIAEQ NAVTVAAGLAHEGKHPFVFSPAAFLAMRSIEQVKVDVAFNKNNVKLIGISGGNSYTWLGT THHSLNDVAITRAIPDLEIYQPCDKYQVRALFKYLVKSDKPAYVRIGKRKLDNVYHEDFE FKPGKAKVIRSGKDICLISTGETLYFALQAANNLAKQGIDAEVVDLGSIKPLDTEMLGKL AQEFDQIATVEEHDVINGIGSAVATEVAKYAHAKLTILGFPDEPAIQGTQDEVFHYYGLD AEGIEKSIRKVLNK >gi|313656766|gb|GL545251.1| GENE 582 593057 - 593257 208 66 aa, chain + ## HITS:1 COG:TM0952 KEGG:ns NR:ns ## COG: TM0952 COG0554 # Protein_GI_number: 15643714 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Thermotoga maritima # 5 65 2 62 492 60 44.0 9e-10 MPGKYILAVDQSTQGTKAILVDHNNQIFYKVALPHKQLVNNQGWVSHDLDEIRHNLYQLF RNILKR >gi|313656766|gb|GL545251.1| GENE 583 593278 - 594504 889 408 aa, chain + ## HITS:1 COG:TM0952 KEGG:ns NR:ns ## COG: TM0952 COG0554 # Protein_GI_number: 15643714 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Thermotoga maritima # 1 408 74 489 492 313 39.0 3e-85 MAITNQRESAAAWSRHTGEPLCHTIVWQDNRTEKLINRIAYPELKETVKNKTGLALSPYF TGAKWGWMLLNEPRVIQARENDDLCLGTMDSWLLYQLTNKRSFKTEPSNACRTQLMNIHT GKWDQQLCEIFGTNINELPEIVDSNAHFGKTDLFGLLKTPIPIKSILGDSQAALFAHGCF NPGDFKVTFGTGSSVMLNIGSNLPSNINNKLNTSIAWSLNGKISYVLEGNINYAGASISW LKDKVQLINKPEETENLALTANPKDHTILIPAFAGLGAPYWKAEAKAAFVNMTATTGKNE LVKATLNSLVYQISDILSQFQQLYPKVNQEIHTDGGMIHNKYLMQYLCNITQKVVKIADI PELSALGSAMNARNKKEQAQSSKSFTPKMKSESAKFYLTEWHDWIDRF >gi|313656766|gb|GL545251.1| GENE 584 595341 - 595538 108 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MECWQSGNAPDSKSGEPIFSARRFKSCTLLCMYTISATDIDVTLFFCKFYVRKILWSIIS IAIKN >gi|313656766|gb|GL545251.1| GENE 585 595596 - 596201 434 201 aa, chain + ## HITS:1 COG:no KEGG:LJ1417 NR:ns ## KEGG: LJ1417 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 20 200 1 183 194 156 50.0 4e-37 MPPFLISVKITRNECEVVIVNLSWLIALVISATILFTLIYKLENSRKFRHLDSSWHKRLI QPVHGHFWSIIEFLNEPKLIAFWDCLLALILILNGEIKKAIWVLVTLAFTDIIGIILKHS IKRERPSENNRQSYSFPSGHVLSITSLSLIIWQIYGGLFGITLFLGLLALWFLVVFSRIV LKAHYPSDIVGATALSVFVFY >gi|313656766|gb|GL545251.1| GENE 586 596721 - 596909 195 62 aa, chain - ## HITS:1 COG:SPy1698 KEGG:ns NR:ns ## COG: SPy1698 COG1307 # Protein_GI_number: 15675555 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 61 219 279 280 72 54.0 2e-13 MEKQNYSGGKVYIDHVDNQKDAESLKEKIIEKFPDAKIEIGICHGLCSFYAEKGGLMVGF EN >gi|313656766|gb|GL545251.1| GENE 587 596834 - 597550 407 238 aa, chain - ## HITS:1 COG:SP0742 KEGG:ns NR:ns ## COG: SP0742 COG1307 # Protein_GI_number: 15900637 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 5 206 4 210 281 159 42.0 5e-39 MEEIKLIVDSSCNLKSDSERNLTVVPLTINLGNQTFLDNDQMDYDVFLNKIYENKEKSGT SCPNLQEWLDALAGCKKAVILTVTSGLSGTYSSAKQAAQIYQEENPGSEILVLDSKSAGP ELKLLVDKLVELLQKDSFSSISESFQTYQENTHLLFSLESLHNLAVNGRISSATAKIAGI LHIRMIGEASKEGKLEPLGKARGSKKRFWNFLKTWKNKIIQVARSILIMLIIKKMLRV >gi|313656766|gb|GL545251.1| GENE 588 597627 - 598175 386 182 aa, chain + ## HITS:1 COG:no KEGG:LAF_0389 NR:ns ## KEGG: LAF_0389 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 22 182 8 168 171 147 46.0 2e-34 MSIKYKSQVKGVIMENLSILNQIQSDVDNFSLPAFSEIPDIGLYLEQTCQFINQSLSPFS SLYLTNSMISNYVKKGIIEKPIKKRYSRQQIARLIFIAFAKPVLSLDNLKVAIKMQDESY SIDIAYQYLREESINCLEYVYKLKKQLDNIGTTQTPEKEILRNIILAAVHEIYLNSYFSV MK >gi|313656766|gb|GL545251.1| GENE 589 598238 - 599056 767 272 aa, chain + ## HITS:1 COG:MJ1226 KEGG:ns NR:ns ## COG: MJ1226 COG0474 # Protein_GI_number: 15669411 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanococcus jannaschii # 7 270 22 283 805 161 35.0 1e-39 MESQLHGLTATEAAKRLEKDGPNEVPEPEFNFWKAFLSKLWNLSAWILEAALLLELILGK GIQAGFVLLMLLFAAYNGATQKKKSRRVLNDISHELTPTVAVERDGKWIKLNSKQLVVGD LINLKRGDVLAADVILKSGKITCDESSITGESAPVNKQINDTAYAGTTVVDGTGLAVVSA TGSNSRSGKTINLINQSAAPGHLQQLLTKIIFYLCMLSLSLTIIIIIAAFARGEGLDGVI QMLPFLAMMFIASIPVAMPSTFAISNSFEAKD >gi|313656766|gb|GL545251.1| GENE 590 599071 - 600513 1317 480 aa, chain + ## HITS:1 COG:Ta1045 KEGG:ns NR:ns ## COG: Ta1045 COG0474 # Protein_GI_number: 16082076 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Thermoplasma acidophilum # 1 472 290 770 780 241 33.0 3e-63 MTSDLTGIQDAANLNLILLDKTGTITENKTAVSSLTNLSSLTDSEVLQLAEAATDKRNTS IIDEAIIDYLKKKGLASLTPDKFTPFTSNTGYSEALVNGKNLKLGSFKQLSLIDTQANNQ IKDIDFTAGRSVALLVDDKLAAVFILQDKVRDDSKAALAELKKRGIRPIMLTGDNQRTAA AVAKQVSLTGNVISIHDFNEQTDLESLAGIADVLPEDKLKMVKFFQEKGYIVGMTGDGVN DAPALKQAEVGIAVANAADVAKRSGKMVLLDDGLMPIVKILDAGHRVYQRMTTWSLTKLS RTAELTMILTFGYLLFGYLPMALNAMVIYTIMNNMVTMMIGTDNTHITYKPENWNIDRMA KVSMSLASGWTIIGCLFVWFMNNKLGFSQGQVGTMVYVYCVLSAMLIVLITRTKTYFWQS YPSRLVGTVQIIDVALTFALALLGIAMTQISLVNLGLVIVVSLVSAVIIDLIYQPVMKDR >gi|313656766|gb|GL545251.1| GENE 591 600577 - 601104 646 175 aa, chain - ## HITS:1 COG:FN1483 KEGG:ns NR:ns ## COG: FN1483 COG0503 # Protein_GI_number: 19704815 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Fusobacterium nucleatum # 3 172 1 170 170 218 59.0 6e-57 MTVDFKKYIASVQDFPNKGIVFRDITPILSDGEIFRAATHELAEYAKKRGADVIVGPEAR GFIVGCPVATELGVGFVPARKPHKLPREVERASYDLEYGSNSLEMHKDAIKPGQKVVICD DLMATAGTLHAAIELIERLGGEVVGAAFYVELPDLKGREKLPNVDIFSLVQYHGA >gi|313656766|gb|GL545251.1| GENE 592 601122 - 602357 874 411 aa, chain - ## HITS:1 COG:L0259_1 KEGG:ns NR:ns ## COG: L0259_1 COG0608 # Protein_GI_number: 15672614 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Lactococcus lactis # 1 205 346 556 558 116 31.0 1e-25 MYDTSWHEGVLGLVANKIVEKVHKPTILLTQNDEGLVKGSGRSNAGFNLFNALFKLKDSL FENFGGHDFACGLSLKEENINPLRKAFENSYQASSNTEVDYYDLDLDVNNIDLSILDDMK KVGPFGTDNPEPVYCVKEPEISSLFVIGKDKSHLKFNVGNLKVIGFNMAFLTQNLLSYVT AIYLNIGKNMWQKKLSLQGQLKAIDFGVPSFSLGKTKAIDFRDQKHILGFADRFVLFDEH NLNKAVGQLGIDQDKIILAKNYNGSGEIVTLLDAPHNRQELDYALKNDYQQLYLRFMLDR LPIRVMPSRTQFANTLKYVYSHPNLKPEDYRLVAPYLGLDGDSIYFILRVFLELEFVKMD KAELVPNKAANHKKLTDSLYFLGTQSQLKFVTSLRTMPSSQLLAYVNQHLK >gi|313656766|gb|GL545251.1| GENE 593 602360 - 603382 839 340 aa, chain - ## HITS:1 COG:BS_yrvE_1 KEGG:ns NR:ns ## COG: BS_yrvE_1 COG0608 # Protein_GI_number: 16079816 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Bacillus subtilis # 1 331 6 337 560 286 43.0 5e-77 MTWKKREATELSEELKEKYQLSPLAAKLFSLREINTDEKLNYWLNGTEEDLADPYLMHGM QEAVERINKAIDNFEKITIYGDYDADGITATTIMYETLAILGADVHYFIPDRFKDGYGPN MKRYQQIVSDGTKLIITVDNGVTGIEEVKYAQENGCDVIVTDHHSFQEQMPDAKVIVHCN YPNQKYPFDDYCGAGVAYTICRALMDDTMPELIELAMIGTIGDMVKVSGEGHIIVKRGLE LLNHTQRPGLRALIKEAGLELGNIDETDIGFQIAPRLNATGRLANASLAVDLLLADDLEV AQKLAKKVEQLNNDRKELTQKVYESALEQIKNLDIIAKIP >gi|313656766|gb|GL545251.1| GENE 594 603382 - 604092 612 236 aa, chain - ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 4 236 37 280 287 143 38.0 3e-34 MTDVKKEKLNKKTKASKKTVFLRVLAVILFIVGIILVFNGPIQEYFVKQNQTSTLQGLTK KKVAANQKKKGMFDYSKVQDIDIAKVTRSRVKNTSNAIGAIAIPKVNLYLPILLGLSDDS LSTGAGTMREDQVMGQGNYPLAGHYMTAKGVLFSPIEDTKIGQKVYLTDLKKVYVYRIYM KRVVDPTAVWLVNNTKKKIVTLITCADGGINRWAVRGKLIHTKKATTKNLSVFKLK >gi|313656766|gb|GL545251.1| GENE 595 604094 - 605932 1932 612 aa, chain - ## HITS:1 COG:L0159 KEGG:ns NR:ns ## COG: L0159 COG0481 # Protein_GI_number: 15673090 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Lactococcus lactis # 1 607 1 607 607 803 64.0 0 MDLKKLKDYQKHIRNFSIVAHIDHGKSTIADRILELTDTVAQRQLKSQMLDDMPLERQRG ITIKLNSVEVKYHAKDGEDYIFHLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVQAQ TLANTYLAIDDDLEILPVINKIDLPSADPDNAKMEIEEMLGLDASDAVEVSGKTGLGIPD LLERIVTDIPAPQGNLEAPLKALIFDSKYDDYRGVVLAVRIEDGMVKPGDEIEIMNTHKK YEVTEVGVSNPHPVKKDVLVAGDVGYLTANIKSVRETRVGDTITSAQNPTEEALPGYRQI PPMVFSGMYPVDNSKYDDLKEALEKLQLNDAALEFEPETSTALGFGFRCGFLGLLHMDVV QERLEQEFNLDLIMTAPSTDYHAIMNDGSTKIIDNPSDLPDAGEYKEVQEPYVKAEIMVP NDFVGPVMELCQRKRGEFQTMDYLDKYRVNVIYHIPLAEIIFDFFDDLKSSTKGYASLDY EIIGYRATDSVKIDVLLNKEPIDALSFIAHRSDAQARARQMTSLLKKLIPRQNFEVDIQG AIGAKIISRATIKPYRKDVTARIHTGDPDRRAKLLDKQKRGKKRMKSVGKVEVPQDAFMA VLKMNDDDIKGK >gi|313656766|gb|GL545251.1| GENE 596 606109 - 607245 1516 378 aa, chain - ## HITS:1 COG:SPy1759 KEGG:ns NR:ns ## COG: SPy1759 COG0484 # Protein_GI_number: 15675605 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Streptococcus pyogenes M1 GAS # 6 377 5 375 378 355 53.0 9e-98 MATSRDYYDILGLDKNASEQDIQRAYRKLSKKYHPDINKAPDAEEKFKEVNEAYEVLHDK QKRAQYDQFGQAGVNGQAGYGAGSGQYGDFSNFSGFGDIFSDIFGGASQRHVDPTAPVKG DDLDYTMTIDFMDAIKGKTSNVTYTRSETCEVCHGTGAEKGTHPITCDKCHGSGYMTVTQ QSMLGVIQRQTLCDKCHGKGVIIEHPCATCHGAGHTDKKQTLEVKIPAGIDNGQQIRLSG QGEAGKNGGPYGDLYIVFRIRPSKDFTRRGNTIYTTVPISFAQATLGDEIKIKTVNGETS LKIPAGTQPGAKFTIRGEGVPYLRGDGKGDQISTVEVVIPKSINDKQKQALVDFVKAGGD SITPQEKNFFERLKDKLG >gi|313656766|gb|GL545251.1| GENE 597 607318 - 609168 2531 616 aa, chain - ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 616 1 608 611 786 72.0 0 MSKVIGIDLGTTNSAVAVLEGKEPKIITNPEGNRTTPSVVAFKDGEIQVGEVAKRQAITN PNTIVSIKRHMGEAGYKVKVGDKSYTPQEISAMILQYIKKFSEDYLGEEVKDAVITVPAY FNDSQRQATKDAGKIAGLNVQRIINEPTASSLAYGLDKDEEDEKILVYDLGGGTFDVSVL ELGDGVFQVLSTNGDTHLGGDDFDQKIMDWLIENFKADNGVDLSKDKMALQRLKDAAEKA KKDLSGVSSTHISLPFISAGESGPLHLEADLTRAKFDELTHDLVERTKIPFDNALKDAGL TVNDIDKVILNGGSTRIPAVQEAVKKWSGKEPDHSINPDEAVAMGAAVQGGVISGDVKDV VLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQIFSTAADNQPAVDIHVLQGERPMAA DNKTLGRFELTDIPAAPRGVPQIQVTFDIDKNGIVNVSAKDMGTGKEQKITIKSSSGLSD EEIKRMQKEAEEHADEDKKKKEEADLRNEVDSLIFTTEKTLKEVGDKVPADEVSKVKDAL EDLKKAQKDNNLDEMKEKKDALSKVAQDLAVKLYQANGAQGQAGQAGPNPSGNNDNNDGN NGDTVNGDFKKVNPDK >gi|313656766|gb|GL545251.1| GENE 598 609223 - 609594 526 123 aa, chain - ## HITS:1 COG:L0273 KEGG:ns NR:ns ## COG: L0273 COG0576 # Protein_GI_number: 15672935 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Lactococcus lactis # 1 123 62 179 179 95 48.0 3e-20 MQNRYNKERAQLIKYESQSLAKDILPAVDNLQRALSVKVDDEASKQLKKGVEMTLDAMVK AMADHGITEIKAEGVKFDPNLHQAVQTTVAENDEQKDHVVQVLQAGYQYKDRTLRPAMVI VAQ >gi|313656766|gb|GL545251.1| GENE 599 609817 - 610272 464 151 aa, chain - ## HITS:1 COG:BH1344 KEGG:ns NR:ns ## COG: BH1344 COG1420 # Protein_GI_number: 15613907 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Bacillus halodurans # 13 147 211 340 343 74 30.0 6e-14 MLSELVNRQLGGNADDLLSLLSDVLKDAASEQMYVDGQINLLNNATGNVQDIRSLYEMFD QNDMISSLLSFEGDGNDEHFPVQVKLGSELPSDLLKNYSLLTASYSVGSHGRGTIALLGP TNMPYSQMIGLMEYFRQELAKKLLDYYGKFQ >gi|313656766|gb|GL545251.1| GENE 600 610320 - 610859 446 179 aa, chain - ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 177 1 177 345 166 48.0 1e-41 MLTERQELILKTIIKDFTQTHEPVGSKTVMSQLPMKVSSATIRNEMAVLEEQGLIEKTHS SSGRIPSSDGYRYYLDHLVEPLQLPESIYNQIVCQLDRPFHQVNEIVQEAAKILSDLTNY TAFAEGPESRHVLITGFRIVPLSNRQVMAILVTNNGNVQSQVYSLPRFTNGEEIERLFV >gi|313656766|gb|GL545251.1| GENE 601 610978 - 611916 542 312 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 309 1 314 317 213 38 2e-53 MEIIHLSYPITKELTHTHVVLALGFFDGVHIGHQKLIKRAQEVAKKKQLPLMVLTFDRHP KEIYLGRTDFEYLDNLSEKAKKMEKLGVDYLAVAPFTEGFSKLSPQEFVDQVIIKLKADT VVAGFDYTYGPKDIANMENLPYFAKNRFEIVILPEQTSGGSKIGSTAIRQAIRDGNLELA TNLLGSHYIMSGIVGHGLRNGHKLGFPTINLILNGRKVIPKIGVYATRTLVHGKWYDSMT SVGYNVTIQASKKIYIESYLFDFNEDIYDEEISIEWYHYTRGEIKFASLDELKKQLIKDE KEIRNYFDNMKN >gi|313656766|gb|GL545251.1| GENE 602 611935 - 612822 694 295 aa, chain - ## HITS:1 COG:SP1212 KEGG:ns NR:ns ## COG: SP1212 COG0130 # Protein_GI_number: 15901075 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 287 1 287 292 234 43.0 2e-61 MINGILVINKSKGMTSGDVVYKLRKILKTRKVGHAGTLDPEVEGVLPIAIGQATKLIELM HERPKSYTGRGLFGFSTDSYDTDGKVLKRKDVTEKISFDKIQEGMDSFLGKIDQVPPIYS AVKVNGKRLYEYAREGIPVTRPVRSVEIFKYQLIEPVTYQDGQEEFGFDIECSKGTYVRS LVNDLGEKLGYPAVMTHLQRTSSSGFDLKQAIRLEELEKNPELAVKYILPIDSFFADYET IDMSEGIWQKVKNGNAISLRNDAKKVALRYNKKVKAIYELKSHTYRPYLMLLQNE >gi|313656766|gb|GL545251.1| GENE 603 612859 - 613131 191 90 aa, chain - ## HITS:1 COG:L0375 KEGG:ns NR:ns ## COG: L0375 COG0858 # Protein_GI_number: 15672750 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Lactococcus lactis # 1 86 31 116 119 74 44.0 4e-14 MSDVTLTAVECTNDFSYATVYYSLLTEEGNKEKEVAEGLEKAKGLMRHLLGQELTVYKVP ELIFKRDTSVQYGSKIDKLIAQLKKQENDR >gi|313656766|gb|GL545251.1| GENE 604 613226 - 615916 3039 896 aa, chain - ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 158 896 61 782 782 705 54.0 0 MAKQRIYEIAKQLGLDNKVLVDKAKELGFNIKNHMSSLSDAEVNELKNKVKPSTPAKSKN DEKKENKIKLSVSSIRRPASQAKKHAKHQHSDQAKKRGNDSSNKRRSNRRENDQKQNNKP TKVNKARDLLAELQQKQRAEERTLAKESEKARKIWHEEKNKTSNQNTEKQNSQKKDTNEV TNQPEEKKTKKVLGPKILKPSPARNRPKTEENKQNQNQKSKPKRKPTMNRTPQIPVMPEE SVKPDSRRNGNGHGRNTGKPGRKGRDNNNFEHRNEHSDKMERRKRKNKHNNHVEEVRKPK TVRKERPLPEVLVFEEGMNAQDLGKLLHREPAEIVKKLFMLGVMTNQNQSLDKDTIELLA AEYGIESQEKVHEDISDIDNLYQKEVEASKESKHQESRPPVVTIMGHVDHGKTTLLDRLR HTNVSEHEAGGITQKIGAYQVRVDDRLITFLDTPGHAAFSNMRARGAEVTDIVVLVVAAD DGVMPQTIEAIDHAKSAGVPIIVAINKMDAPGANPSHVTEQLMKYNLIPEDYGGDTIFVK ISAKTGDNVEELLQMILLQADVLELKADPHQKAIGTVVEARLSRGRGPVADILVQQGTLE VGDPIVVGNTFGRVRVMTNDKGRRVKKATPSMPVEITGLNDVPESADKFVVFEDEKTARS VGEQRAQNALQKQREKVQHVTLDNLFDTMKRENMKEVGIVLKADVQGSVEALSQSLEKID VEGVRVNIIHSGVGAINDSDVTLASASNAFIIGFNVRPTATAKSQAESDEVDIRSYSVIY KAIDDVEAAMKGMLEPTYEEKVTGNLTIRETWKVSKVGTIAGAFVDSGYIHRDSGIRVIR NGVVIYDGQVASLKRFKDDVKEVKQGFDCGLTIENYNDLKIDDELEAYEMQEVKPK >gi|313656766|gb|GL545251.1| GENE 605 615921 - 616232 485 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238854740|ref|ZP_04645070.1| ribosomal protein HS6-type [Lactobacillus jensenii 269-3] # 1 103 1 103 103 191 99 9e-47 MHNRKKIINFLGLIQRAGKIVSGTDLVVSSIKTGKVKLVIIASDLSKATRQEIEALAQKK GLPIIDEFSELEISQAIGKTRKVLAVSDLGFSKAIQKKLNEGV >gi|313656766|gb|GL545251.1| GENE 606 616233 - 616463 74 76 aa, chain - ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 72 23 94 108 71 50.0 3e-13 MVRIVINKENEVSVDPTGKKPGRGAYVSLEPDKITEAQKSKILDRSLGTKIDDSFYQELF EYVDHQKARKELFGDK >gi|313656766|gb|GL545251.1| GENE 607 616538 - 617644 724 368 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 352 9 361 537 283 44 2e-74 MTKEMLEAFATLENEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMA IKTVVDEVQDARLEVSLKEALEINKAYEVGDEIKFEVTPKDFGRISAQTAKQVIMQRLRE AERNHIVSEYSQYQDELVTGVVERHDNRFVYVMIDKVEAVMPRGDQMPNEVYNPQDKIRV LVTKVGNDTKGAQIVVSRTAPDMVKRLFEQEVPEVYDGTVQIVSVAREAGDRTKIAVKSD DPNIDPVGTCVGPKGARVQNVVNELGGENIDIVKYEDDPADFIANALNPAEVIAAQFGED EDEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESQVEFVDEDNGNDENVGD ENPTNNEE >gi|313656766|gb|GL545251.1| GENE 608 617664 - 618173 520 169 aa, chain - ## HITS:1 COG:lin1358 KEGG:ns NR:ns ## COG: lin1358 COG0779 # Protein_GI_number: 16800426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 12 169 1 155 155 135 46.0 4e-32 MLTLFSTEEDFLTKIVDLVTNLVSPIAEKRGDELVDVEYVKEQNQYYLRIYVDRGESGID IEEIAALSEMVSEELDKLNPDPFTEPYMLELSSPGLERPIKNERDWEKAVNKYIHVACYQ KIDGQKAFDGTLLSKDDDKITLKIKIKTRTKELEIPVGAIANARFAIEF >gi|313656766|gb|GL545251.1| GENE 609 618236 - 622453 3695 1405 aa, chain - ## HITS:1 COG:BH2418 KEGG:ns NR:ns ## COG: BH2418 COG2176 # Protein_GI_number: 15614981 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus halodurans # 7 1405 44 1433 1433 1470 52.0 0 MDVYGKKRKWDIHVFFDTPLKFDTYEALVKLAEQEFSPFIDVNIMISTADGSDNYLPEYW SYVVSQTENMSAMARECLSSKKPVKVASDWIIEVETPMLANAISQSDLDNLSFDLRKYGF FNIKLKLQVKNANEDANLASLEQLEQLQAEHEKSMNEAFKNIPAKPKRVVQSSTRQTREK NFGKADIPASEVIGMKEIEDGMRNIAIEGNIFNIDSHELKSGAFIFSGEITDYSDSIAFK KFVKDKEQIEMLKGIKPGVWARMSGSALDDQYVHDVVFNINNFKIVEHVGRTEKYQEEPK RVELHLHTIMSQLDATNTATDFISTAKKFGQKAIAITDHGDVQSFPEAYSAGKKQKMKIL YGLEANMVDDHALLVLNPASMTYENREFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIE RFDEFINPHHPLSETTINLTSITDEMVSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGF VNAALRRSGLKEITQPVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEHHHRANQDAEAT GYLMFKLLDAFNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKNMYKLVSL ASTQYFYREPRTPISELRKYREGLLFGSGCWKGDVFITMMQKGYDEAREKARFYDFLEVQ PPAAYSQLIADELIKDEEQLEEILKNIYKLGQELNIPVVATGDCHYLNPEDKIYREILIA AQRSNPNRNKSQPKLHFYSTQEMLDAFNFMGEDVAKEIVIDNTNKIADEIEEIAPVKSGL YPPHIKDADQQMTDLTYNKAYELYGKPLPKIVKDRIELELNSIISNGYAVIYLISQKLVA KSNKDGYLVGSRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPD KKCPECGTELVKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPANSFR AGTISTVADKTAYGYAKHFEEERNLNLRSAELDRLATGTSGVKRTTGQHPAGIVVVPDDM DIYDFTPVQYPADDLNAAWLTTHFDFHSIHDNILKFDILGHDDPTMIRMLQDLSGVDPMT IPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGVPEFGTKFVRGMLEETNPTTFSELLQI SGLSHGTDVWLGNAEDLVNNGTCKLKNVIGCRDNIMMDLIHWGVKPEVAFSTMESVRHGR GISDDDMAVLKKNNNIPDWYIPSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTS YFSVRADLFDLVAMSHGKNSVKAAIKKIQDQGNDASAKDKSLLTVLEIANECLERGIKIK MVDVNESEALNFKIVDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLRTRGKVS QTIMDYLEVNGVLEGMPDQNQLSLF >gi|313656766|gb|GL545251.1| GENE 610 622566 - 624263 1884 565 aa, chain - ## HITS:1 COG:BS_proS KEGG:ns NR:ns ## COG: BS_proS COG0442 # Protein_GI_number: 16078720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Bacillus subtilis # 1 563 1 564 564 600 52.0 1e-171 MRQSNFFMPTLKEAPADAVAASHKIMIRGGYIRQVTAGVYSYLPLGYRVLRKAERIIEEE MDRINVPEMIMPHLLPATLWQESGRYYKYGDEMFKLKDRHGRDSLLGPTHEETFTEIIAK NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKAA YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID TFKQEPEELKTMEKVATPGCETIDQLTEFLHVPATRIVKSILYMADDQKILVLIRADKQI NEVKLGHLLDANEVREATAEELVNVTGSEKGGVGPVKADWADKVIADETVKGLYNVVVGA NETGYQFQNANLDRDFKVDEFSDIRTANEGEPDPVDHLPLQFTTSIEVGHIFKLGTYYTE TMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVEQNLTEHGVAWPKEIAPFTLHLIQMKM NDEDQTKLAESLETKFSEKYDVLYDDRKERAGVKFADADLVGAPIRITIGKKAADGIVEV KRPTDDKAVEISVDDLEAFVAKELD >gi|313656766|gb|GL545251.1| GENE 611 624283 - 625287 837 334 aa, chain - ## HITS:1 COG:L181494 KEGG:ns NR:ns ## COG: L181494 COG0750 # Protein_GI_number: 15674110 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Lactococcus lactis # 9 333 107 427 428 239 43.0 4e-63 MVLDEKGKVVRIDASESDILISGIPVQVTKADLVKELTIQGYENGDESKECTYSVDHDAT IIDNTGTELSIAPEDTQFQNAKIWQKISTNIAGPLMNIILGFVIFIIWSISTVGPSTTTI ARTLEHSPASTVLKKNDQIIAVNGKKVASFEDFSEKVAENKSKKMQVTVKRASGIKTFSL TPKLVKRNSEKVYQIGIFAKSDERFSVKLARGWNMAVNTTGLIFKAVGNLISHFSLNKLS GPVGIYSQTSQVSKFGLSAVVVFLAMISINLGIMNLLPIPGLDGGKLLLNLVELIRGKPI PEKHETAVEIAGVVFLLILIILVTGNDIYRYFIK >gi|313656766|gb|GL545251.1| GENE 612 625353 - 625535 131 60 aa, chain - ## HITS:1 COG:SP0263 KEGG:ns NR:ns ## COG: SP0263 COG0750 # Protein_GI_number: 15900197 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Streptococcus pneumoniae TIGR4 # 1 45 1 45 419 71 66.0 5e-13 MTTVLIFLVIFGLLVFVHEFGHFFVAKKSGVLVREFSIGMGPKLFQTRRKRPVIPFAGFH >gi|313656766|gb|GL545251.1| GENE 613 625538 - 626344 710 268 aa, chain - ## HITS:1 COG:lin1353 KEGG:ns NR:ns ## COG: lin1353 COG0575 # Protein_GI_number: 16800421 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Listeria innocua # 1 266 1 261 262 208 47.0 1e-53 MKQRTITAVIALILFIPIVVAGGYWIDWLAAALAAVGISEVFLMKKQILLSIDFLLALLA TLTWTVPKTFFNVFPKGVTRPGIYFTVVMLLLTWTVLSKNKTSFDDVGVYTLASLYIGTG FHYLAAIRNIDHVSLLGLALLGYVFVVVWSTDIGAYMIGKKFGKHKLWPVISPNKTWEGS LGAVICAIIFSAIYINLVPLVRDYTYLIWTSAFLSIVGQMGDLVESAYKRYYGVKDSGKI LPGHGGILDRFDSMLFVLPVIALFFIKG >gi|313656766|gb|GL545251.1| GENE 614 626356 - 626721 391 121 aa, chain - ## HITS:1 COG:MJ1372 KEGG:ns NR:ns ## COG: MJ1372 COG0020 # Protein_GI_number: 15669562 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Methanococcus jannaschii # 4 120 164 280 280 135 56.0 2e-32 MADTKNNTGMILNFAFNYGSRREITSAIKKIAEKVKNESINLEDINDELVNQELLTADLP YPDPDLILRTSGEQRISNFLLWQLAYSELAFTDKYWPDFNEEDLKKVIMDFQMRDRRFGK L >gi|313656766|gb|GL545251.1| GENE 615 626739 - 627068 246 109 aa, chain - ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 9 107 26 124 252 149 64.0 9e-37 MTKEKELNHLAIIMDGNGRWAQKRHLPRVMGHKQGMQNIEKIALAANKMGVKVLTLYAFS TENWGRPTDEVSYLMKLPITFFDKFMPKLMENNVKVNIMGFLDELPEKL >gi|313656766|gb|GL545251.1| GENE 616 627072 - 627629 874 185 aa, chain - ## HITS:1 COG:L0367 KEGG:ns NR:ns ## COG: L0367 COG0233 # Protein_GI_number: 15673991 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Lactococcus lactis # 1 182 1 182 185 194 60.0 7e-50 MTNDVIAKAKENMNKSIAVYQKELGNIRAGVANASLLEGVKVDYYGVPTPLTQMSSVTIP EARVLLVTPYDKSSLDNIEHALLASDLGLTPANDGNVIRLVIPQLTGERREEIAKQVGKQ AEQAKIAIRNVRREAMDSLKKQEKNGDITEDEQKRLEKDVQKVTDDATKRVDQLADEKRK EITKG >gi|313656766|gb|GL545251.1| GENE 617 627629 - 627763 113 44 aa, chain - ## HITS:1 COG:BH2425 KEGG:ns NR:ns ## COG: BH2425 COG0528 # Protein_GI_number: 15614988 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Bacillus halodurans # 1 42 196 237 239 58 69.0 3e-09 MDRTASSLSMDTDIPLIVFNVNTEGNIKKVIEGENIGTVIRGGK >gi|313656766|gb|GL545251.1| GENE 618 627769 - 628353 880 194 aa, chain - ## HITS:1 COG:L70624 KEGG:ns NR:ns ## COG: L70624 COG0528 # Protein_GI_number: 15673992 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Lactococcus lactis # 1 193 1 193 238 271 68.0 4e-73 MSQVKYKRIILKVSGEALAGPKGVGIDPIVISHLAKEIKSIHDLGVEIGVVCGGGNMWRG ETGAKLGMERSQADYMGMLATIMNGLALQDGLEHVGVPTRVQTSIEMRQVAEPYIRRRAV RHLEKGRVVIFGGGTGNPYFSTDTTAALRAAEIDADVILMAKNGVDGVYSADPKIDPSAT KYDELTQLEVISRT >gi|313656766|gb|GL545251.1| GENE 619 628480 - 629355 574 291 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 286 1 275 283 225 45 4e-57 MAKITAAQVKELRERTGAGMMDSKKALVEAEGDMERAIDILRENGVAKAAKKSGRIAAEG LAEFAFEGNTAALVEVNSETDFVASNDKFINLVNDITKAVLAAKPKNMEEALNAPLADGT IESATTNLTAVIGEKITFRRFKLINKSDDEVFGAYKHNGGAIVALVTLKGGNEEAAKNIA MHVAAINPEYLNKDSVPADELERQKAVFTKETENEGKPANIVPRIVEGRVNKYLSEICLV DQPYVKDSDMTVEAYAKSQNATVVNFERFEVGEGIEKKQEDFAAEVREQMK >gi|313656766|gb|GL545251.1| GENE 620 629391 - 630164 1314 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238854752|ref|ZP_04645082.1| ribosomal protein S2 [Lactobacillus jensenii 269-3] # 1 257 1 257 257 510 100 1e-143 MSVVTMKQLLEAGVHFGHQTRRWDPKMKPYIFTQRNGIYIIDLQKTIKMLDDAYNYVKAV AQNDGVFLFVGTKKQAQEAIKEEATRAGQYYVNQRWLGGTLTNWTTIQSRVKRLKQLKAM SEDGTFDLLPKKEVALLTKEMDKLQRFLGGIEDMPRIPDVMFVVDPKKEKIAVHEANKLG IPVVAMVDTNTDPTPIDVIIPANDDAIRAIRLIAGAMADAVIEGKQGEDDENVEQEMADK AAESNDEKSMEEVANED >gi|313656766|gb|GL545251.1| GENE 621 630338 - 631348 754 336 aa, chain - ## HITS:1 COG:SP1536 KEGG:ns NR:ns ## COG: SP1536 COG4123 # Protein_GI_number: 15901380 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 3 241 7 244 249 186 40.0 6e-47 MKLKNGEKIDHIYSDQIQIIQDKEAFSFSLDTILLAAGCLDYIKDRDQIVEFCAGNCAAS IYLAHRSEAHFKTIEIQEHAYDQGKRSIELNHLENRVEPFLGDVNDAVKFVGRQNNMVLV NPPYFKVAPGHVVNPNEKKAIARHEILVDLEHIILQASQVLKNKGRLVMVHRPERLGEIC YFCQKYNLPVKKIQPYSSSAEKESNLIVITASKNGASDGLILKSPIITQTSDGHYNPEIN QYLLAQEADVKKNYYFYVLLCNDNTLYGGFTTDLQQRLNAHNSGKGAKYTKSRRPVKMIY HECFNDKQQALKREYWFKHHSRSWKEQFLKDHNVTI >gi|313656766|gb|GL545251.1| GENE 622 631412 - 632026 602 204 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 192 1 194 249 179 42.0 3e-45 MFYKIIRPIARFIVWVLNGHLHVHNKERLPEGTYILVAPHRTWWEPILFALATSPMTYMF MAKKELFKNPVLSFILRHAGAFPVDRKNPGPSALTIPVKGLRKNHDSLMIFPSGTRHSAE LKSGAFVIAKMSGKPLLPVVYQGPLTFKDFLKRKPLEVVIGNPITIERKSKIDKETTPIL YKQLEDAWAKLDYDQNPDFKYIPK >gi|313656766|gb|GL545251.1| GENE 623 632052 - 633836 216 594 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 338 584 264 515 563 87 26 1e-15 MNKEYESIWSKAITFKEQKQIFKRIFKFVLLYKREFIASLFGALLVSVINILLPRFLQYY LDHFLAHKSATWQIIYGVAAIYLLGLICKALLQFFYEYYYSLAGEKTLEKVRRVLYQKLH QLGMHYFDETPAGSILSRVTNDTMTLSTFLSMFSAVMIGIISMITAFVAMYYTDKIAGLI ILAFLPVLLLIMWLYSYYNSRLYREYRERNSLMNTKLNETITGINVIQQFRQEKRIQTKF EDIANAQLKTRMKLVKMNALLLSPLTSLLYNVAIAISLIYFGFPTRSVFVAAGVIYAFSN YIQSFFNPISSMMDSLTSFTDGIVAGKRIFKILDEDELEPQQKVDPKAKIELGKIEFKHV SFSYDGKNDVLHDISFTLEPGQTLGIVGHTGSGKSSIINIMMRFYEFHSGEILLDGHDIR SFSPEELRKKLGLVLQEPFMFYGDIKSNIRLYNQEISDKAVIQAAKQVQADGFIEQLPDK YDSKVIEGGSEFSSGQRQLISFARTLVTNPKILVLDEATANVDTETETLIQKGLKQLRQG RTTLAIAHRLSTIKDADKIIVLDKGRIVEMGNHEELLNQKGYYYDLYRLQQDRG >gi|313656766|gb|GL545251.1| GENE 624 633829 - 635583 211 584 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 353 561 146 353 398 85 29 5e-15 MDIFIKLSWFFKKYKKRYFLGILFLILTSFANLIPPLALGRMAELLNQGKISWLDFFINV LGIIVAALFLYMFRLGWRSQLWGGAQILARDLTTKLYWHFLKMDRTFYQRHRTGDLMAHA TNDITAIQFVAGDGVLALVDAVFTGGTTLIAMMIFVDWRLTLIAMIPMPLLALMARFLGT KLHEAYRHSQEAFSQLNNKTQESITGIKVLKTFGQAQEDIAAFDKMTYDTIRINKRVFKI DSLYDPLTTLIIGFTYIITIIVGGQMVQTNEINIGQLVSFVAYIASLEWPMFAIGYLFNL IERGSASYKRVMSLLSEKSLIKDQVDHTVDKITGNLEVNIDKFKYPDEKNRLALQKINFN LKPGQTLGLVGKVGAGKSTIIELLMRDFDNYQGQIKLAGKNIKDIALDSYLGEISYVPQD NFLFSVSIADNIRFAEPEASLDQIRQAAQEAALDTDIMLFPNKYDTLVGENGVSLSGGQK QRLAIARALIKDSQILILDDALSAVDAKTEKSILNNLQKCRKDKTTIIAAHRLSSVMKAD LILVLKDGQVIERGTHDQLLAENGWYKEMWDRQELEKKVGEGIE >gi|313656766|gb|GL545251.1| GENE 625 635673 - 635894 413 73 aa, chain - ## HITS:1 COG:SA1178 KEGG:ns NR:ns ## COG: SA1178 COG3763 # Protein_GI_number: 15926924 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 67 1 67 80 62 61.0 2e-10 MNLGLAIILIIAALLIGLVGGFYGARAYMKKYFQENPPINQDMIVAMMSQMGQKPSAKKV NQVMNMMKHQQKN >gi|313656766|gb|GL545251.1| GENE 626 635912 - 636160 343 82 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01293 NR:ns ## KEGG: LCRIS_01293 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 82 7 88 88 74 75.0 1e-12 MDKKEEERVRNRINELYHKKQTEGLTPEEQAEREELHKKFIANFRAGFKQQIENLVLIDK NGKEITSEKAKRAQRRKGLRKD >gi|313656766|gb|GL545251.1| GENE 627 636299 - 636934 914 211 aa, chain + ## HITS:1 COG:BH2356 KEGG:ns NR:ns ## COG: BH2356 COG1974 # Protein_GI_number: 15614919 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Bacillus halodurans # 4 209 3 204 207 145 43.0 4e-35 MTLKEDSNQFKILEFIYDTVEDRGFPPTVREICEAVNLSSTSTVHGHLNRLVKTGYLYKD PSKPRALEITQEGLNALGVDPGIPYLGTVAAGDPDTALADDSGAEYYVERPERFDKRDPL YMLRVDGMSMIERGIYPDDLVIVRHQNVAAQGDLVIAYTENNGTTLKELVRDHKSKRLRL KAYNKEMYPDELLPDTNFKICGKVVALNRDY >gi|313656766|gb|GL545251.1| GENE 628 637042 - 638988 2564 648 aa, chain - ## HITS:1 COG:PM1846_2 KEGG:ns NR:ns ## COG: PM1846_2 COG1263 # Protein_GI_number: 15603711 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Pasteurella multocida # 108 467 15 384 384 322 45.0 2e-87 MAMDYKKVASEVVAAVGKDNLVAAAHCATRLRLVLKDFDAIDQAALDNNADVKGTFKTNG QYQIIIGPGDVNFVYDELVKLTGVQEASTEELKKIADNGKPFNPVMAFIKLLSDIFVPII PALVAGGLLMALNNFLTQPGLFGPKSIIQMNTAVKGFSDIIQLMSAAPFIFLPILVAISA SKRFGANQFLGAAIGMIMTSPDLGATAKYWNILGYHVMQTNYKYQVVPVLVAIWVLSILE KRFHKILPQAVDFTFTPLLSVMITGFLTFTVIGPVFKEVSDLLTQGIVWLYNTTSFIGMG VFGLTYSAIVTTGLHQSFPAIETQLVTEFAKNHVGSGDFIFVVASMANVAQGAATLAIYF LTKNKKMKGLASSASVSAFLGITEPALFGVNLKYKFPFFCALIGSGVAAMVAGLTKVIAA SMGAAGFIGFLSIYPSSIPFYVMCELLSFAVAFALTFMYGKKNLKEEAVNMSTVSAIQST EKQTEVEQNVKKQLSLSDEVIASPVNGKEVSLTSVHDQVFSAKLMGDGAAVIPADGNIYS PVDGEVTVAYETKHAYGLKSDDGAEILIHIGIDTVNLKGEHFESFVKQGQRVKKGDKLGT VDLAAVKEAGYDTTVMVIVTNTNDYASVDRVQNDEVKAGDNLVAVTAH >gi|313656766|gb|GL545251.1| GENE 629 639230 - 640069 865 279 aa, chain + ## HITS:1 COG:SP1724 KEGG:ns NR:ns ## COG: SP1724 COG1621 # Protein_GI_number: 15901557 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 1 270 1 270 484 315 52.0 6e-86 MEWSTEKRYLPYEKWSAKTLLKLQTQAGNSPYQLHYHIRPKSGLLNDPNGFSYFNNEWHV FYQSYPFGPVHGLKSWDHCVSQDLVHWNDLGTAIYPDTDLDSHGAYSGSAKVIDDKLFLM YTGNARDAEWIRHPHQMGAFMDKSNNIEKLPTSLIEQPQHTTDHFRDPQILEHGGKYYCI LGAQDKATKTGKIALFEADDVKGPWHDLGYVDFTTEEMGYMIECPNLVFIDEKPVLIFCP QGLDKSIVKYENIYPNMVLVGDKFDFKSAQFDSKNSIKI >gi|313656766|gb|GL545251.1| GENE 630 640395 - 640679 180 94 aa, chain + ## HITS:1 COG:SPy1816 KEGG:ns NR:ns ## COG: SPy1816 COG1621 # Protein_GI_number: 15675646 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pyogenes M1 GAS # 1 91 389 477 479 73 38.0 9e-14 MKLHIDTAKGELILDRENSGFTVNEKYGTKRAIKLLENSALDLDIFVDHSLIEIFINGGE HVLTARFFPKEGSNKLLIDKNIKFKGQYWEMADI >gi|313656766|gb|GL545251.1| GENE 631 640679 - 640864 136 61 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 58 1 58 321 81 74.0 3e-16 MSVKLTDVAKLAQVSPTTVSRVINNYGYISEKTRKKVFSAMKQLNYQPNSLARSLQGKKL A >gi|313656766|gb|GL545251.1| GENE 632 641011 - 641478 342 155 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 128 111 234 321 103 44.0 1e-22 MLKANQVDGIISGTHNLDITEYQETGLPIVSFDRNLGPDVPVVSSDNYQGGWVATKSLIN SGCKKIAFFGNIKGSNNPTDLRLKGYQDAINEYGLKEILVPMNFYESANLKKMAFQKLLS QQKSTVPFLLMIFQLTYSGNIVVLIISRIVKISKS >gi|313656766|gb|GL545251.1| GENE 633 641728 - 642075 578 115 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526078|ref|ZP_03956127.1| 50S ribosomal protein L19 [Lactobacillus jensenii JV-V16] # 1 115 1 115 115 227 100 1e-57 MDPLIQELTKEQLRDDIPAFRAGDTVRVHVRVVEGTHERIQLFEGVVIKKKGVGISATYT VRKISSGIGVERTFPVNDPRVAKVEVVRHGRVRRAKLYYLRNLHGKAARIREVRR >gi|313656766|gb|GL545251.1| GENE 634 642182 - 642637 529 151 aa, chain - ## HITS:1 COG:SP0779 KEGG:ns NR:ns ## COG: SP0779 COG0336 # Protein_GI_number: 15900673 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 8 150 99 238 239 174 60.0 4e-44 MAKRWADEEQDLTFICGHYEGFDQRVYEMADEVVSIGDYVLTGGELPTMSMIDATVRLLP GVLGNSASAVEESFSHGLLEYPQYTRPAEFEGMKVPEVLMSGNHGKIAEWRLKEALRNTL LRRPDLLENREFTPEESKLLTEIKLELENKN >gi|313656766|gb|GL545251.1| GENE 635 642901 - 643413 526 170 aa, chain - ## HITS:1 COG:SPy0847 KEGG:ns NR:ns ## COG: SPy0847 COG0806 # Protein_GI_number: 15674881 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Streptococcus pyogenes M1 GAS # 1 170 1 172 172 129 41.0 3e-30 MQFYDVAQVLTSHGLKGEVKVKVITDFPEQRFCEGVKLFIKDDMRQLTVESGRPFKQFWL VTFKEIKDINEAESLFGKTLVISEEDQDQLPEGHYYYHQIIGLSVVDNETDELIGKVTDI EAPGANDIWQVTPKVGKPFWLPYVSSFVKSVNLDKGEVRVELMEGLRDED >gi|313656766|gb|GL545251.1| GENE 636 643484 - 643756 463 90 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526075|ref|ZP_03956124.1| ribosomal protein S16 [Lactobacillus jensenii JV-V16] # 1 90 1 90 90 182 100 3e-44 MAVKIRMRRMGSKRKPFYRIVVADSRAPRDGRFIEEVGYYNPVSQPKELKLDEEKVFAWL QKGAQPSDTVRSLLSGAGLMQKLHDAKYNK >gi|313656766|gb|GL545251.1| GENE 637 643846 - 645273 1749 475 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 456 1 457 523 521 62.0 1e-147 MAFENLSERIQKALKNLTGKGKVSEADINAASREIRLALLEADVNFKVVKDFIKKIKERA LGQEVQGSLTPGQQIIKIVNDELTKMMGEEAAKLNKAPHIPTIIMMVGLQGTGKTTTVGK LAKYLMDTEKARPLLIAGDIYRPAAIDQLKQIGDQLSVPVFSEDEKDVAKIVADGLAQAK EAKNDYVLIDTAGRLEIDEALMEELERVKAVAKPDNIVLVVDAMTGQVGAQVAETFDKRL DVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSELEGFYPDRMASRILGMGDV LTLIEKAQRDYDAKEAEKVAQKMRENTFDFNDFIDQLEQVQKMGPLDQIMKMLPGMANNP QLKNFSIDEKQIAHTKAIVYSMTEAERQDPDLLNPSRRRRIAAGSGRPIMEVNRMIKQFK QSKEMMQKITSGNTKALAGLPGMDSPMAQAAMRRMGKQFKKGKKKRLKHIKRFKS >gi|313656766|gb|GL545251.1| GENE 638 645278 - 645613 337 111 aa, chain - ## HITS:1 COG:SPy1201 KEGG:ns NR:ns ## COG: SPy1201 COG2739 # Protein_GI_number: 15675166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 77 4 80 113 75 55.0 2e-14 MELIKNEELADLYSFYGQLLTKGQQAYFEDYYYDDLSLGEIADNHGVSRQAVYDNLRRSS KSLENYEKKLHLKRDYLQMDQLASVALKQLASDPEASRDNLTKLIKLIRGE >gi|313656766|gb|GL545251.1| GENE 639 645684 - 645917 264 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854769|ref|ZP_04645099.1| ## NR: gi|238854769|ref|ZP_04645099.1| hypothetical protein LACJE0001_0733 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_3177 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_01298 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0733 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_01298 [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_3177 [Lactobacillus jensenii 208-1] # 1 77 1 77 77 89 100.0 7e-17 MKINQYQIGHLVNMLLLALLILRVSQVNLTIAILFVLFSIIPSYYLLGQAAKKKMYLVYL QMLWDIILFSGLYFFIK >gi|313656766|gb|GL545251.1| GENE 640 646059 - 646502 391 147 aa, chain + ## HITS:1 COG:AF0170 KEGG:ns NR:ns ## COG: AF0170 COG2461 # Protein_GI_number: 11497787 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Archaeoglobus fulgidus # 4 129 297 420 434 73 35.0 2e-13 MEEETDMDKDIKLIGGHLSLDQLNAIFRKIPQEFDVLDENDIVVWSSMNTNRIFPRTEAD IGKSVFEIHPGHSQKAVKAVLKQMHNGKRKSLSINITKNKMPINISFYSLHNEAGKYIGC VEVTQAVKDYQVKGSKWHNLIQLFFHR >gi|313656766|gb|GL545251.1| GENE 641 646624 - 647865 1507 413 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 1 410 64 473 474 298 37.0 2e-80 MDLPDWAYRTQAVPNVDYKNLGYYEESGINEKNVAMSCTESTYGNERTLAFDPLVVDGLD EDCMQNVVAPYIDSARDGVKLLGELIKKYGSAAGNSVLFGDKDEVWYMEIVTGHHWVAQR IPDDCYAVAANRVSIEQVDFNDSDNFMWSEGIQEFVEKHHLNVDREGFNFRHIFGTYNEK DRHYNTSRVWYAQRYFNPSIEQDPEDGDLPFIRKAEKLINPDDITFVLGSHYQETPFDPY GKGTDEEKHRYRPIGLNRTQNAHILQIRNDLPEDKAAIYWLCIGGPTFTPFIPFFANMND TEESFKNTSLTFNQKDAWWFYKAVAATVESHYPQFVQFDTDYLIEMRRYFRARIEEVVAK AGDLKGEELTEFLTKENQETVRYTREQTEKLWGKMLTESINMSKLTFNMDKNL >gi|313656766|gb|GL545251.1| GENE 642 648058 - 648357 292 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 1 99 226 324 336 117 55 2e-78 KIERTIKKLVPDQPCETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVIL AIRNEMKLPVKLVGLGEKAEDLADFDAASYAVGLFHGIV >gi|313656766|gb|GL545251.1| GENE 643 648330 - 648959 512 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 1 203 26 227 336 201 48 2e-78 LKETNQGFGARLNAFFAQFRSVDENFFDELEDLLIESDVGFETSEELIDQLKDEAKLQNV KSHDELKKLIVQKLVEIYDQNGDADAEKLTYNEGKTNVYLFVGVNGAGKTTTIGKLAQRF KQEGKKVVLVAADTFRAGAVEQLKEWGKRTETEVVTGPVQADPASVVYDGVKHGLEEDAD YVLVDTAGRLQNKQNLMKELEKLSGQLKS >gi|313656766|gb|GL545251.1| GENE 644 648869 - 649369 509 166 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854772|ref|ZP_04645102.1| ## NR: gi|238854772|ref|ZP_04645102.1| cell division protein FtsY [Lactobacillus jensenii 269-3] signal recognition particle-docking protein FtsY [Lactobacillus jensenii SJ-7A-US] FtsY-like protein [Lactobacillus jensenii 208-1] cell division protein FtsY [Lactobacillus jensenii 269-3] signal recognition particle-docking protein FtsY [Lactobacillus jensenii SJ-7A-US] FtsY-like protein [Lactobacillus jensenii 208-1] # 1 140 1 140 437 162 100.0 5e-39 MGLFDKIKKTLFGNNEEKAKQAPSKPEEEKAEVAEETNEVKLEENKVAEVETDAKSAEAE NESSASEEVKNEPEVSSSKEAQTSLEEVAESKPESEPVDTAASQEVEDSSPEEEKGEEIE PETESSESKKQELYDNGLKKQIKALVLGLMPSLPNLEVLMKISLMN >gi|313656766|gb|GL545251.1| GENE 645 649369 - 650574 1223 401 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 22 396 812 1183 1186 268 44.0 2e-71 MAEKKAQIDDFDNLNKDVQAKLAEINPKLAVLHNQKTNLKAKLADLSTQKETSASQVKLL ESKLVDLTSNKELTAEQKTKKAQKITELTHEKQELEAKLKKISSHLGQLDAQISQLDASF TRNYDLRKDAATEQESYSVDLAQVKTKMKQHLDKLRDEYALTYEMALNQAEIENTPENQA KLAKSVKLHQMSLDDIGPVNLSSIEEYEEVKSRYDFLTGQQDDLLKAKEDIEKSMSNLDE EVKKRFSQAFKEIAKSFSQIFPVVFGGGNAKLVLTDSDNLLETGIEIIAQPPGKKLQKLS LLSGGERALTAITLLFAILQVNPVPFCILDEVEAALDDANVTRFAKFLHHYDMHTQFIVI THRRGTMEKADQLYGVVMQESGVSQVLSVSLKEIKDNDEVS >gi|313656766|gb|GL545251.1| GENE 646 650592 - 652895 2404 767 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 3 696 17 712 1186 393 39.0 1e-109 MQKNKIKFGDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGSNMKDVIFAGSQYRTP MNHAEVELVFDNKNRALNFDADRVTVARRILRNGDSEYLINNQTVRLKDVHALFMDSGIS QDSLAIISQGKVDEILNSRPENRRAIFEEAAGVLRFKEQKQAATNQLAKTTDNLIRINDL VNELEGRVEPLHKQSSLAKEYKFQKSGLDKDLKTLLAFELQDLELKRTELAKKAEKSQIL LNKLDEEVSQSQNDLAQKKNQLAKTTKEKEALQERLLSLTQEISNLNTDLQVAEQSDQYN NATKHEYENQLNELKKNLAVLSEKEVGLQKEVEQAISQETALTEKRDSYAKSLHSDPETL SKELENLRNDYIQSLQDQTSNNNDLVYAENELKRLSNSTIPELKTAEAELEKAEAELAQL KKQGQDASAKKSNLQEQVQTKNVLISDLTAKQNLANRSLQEISQKYQAAKAQKEALENIQ KRHEGYYYGVRNILNHLDQYQGVIGAVGELLDFPAELEAALTTALGGGVQDLVTDTKQSA RNAIMQLKQSRMGRATFLPLDGLRFSTIPSSTVTTLKSMPGFIGVASELVKTKGQVDISA AVNYLLGNVIVADTIDNAMKINARVYRYRIVTLDGDVISPGGSMSGGAKNQRNNSPLQTA GEINKLTKVVAELIAEVKTAKEQILSLDEKLSKEQKLFASLNDELQVAIQDLSALAVSYQ NKESEVKRLKEAQHIYQNRADERAAEIKHLEEKLKRKSKLKLKSVSV >gi|313656766|gb|GL545251.1| GENE 647 652945 - 653229 283 94 aa, chain - ## HITS:1 COG:SPy0531 KEGG:ns NR:ns ## COG: SPy0531 COG0571 # Protein_GI_number: 15674631 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Streptococcus pyogenes M1 GAS # 1 93 135 229 230 71 45.0 4e-13 MDAVQKFLKLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKIEYQVLEESKLPSNFKVA LLVEGKKISEGSGHNKKAAEQVAAKLALIKYQEK >gi|313656766|gb|GL545251.1| GENE 648 653277 - 653636 401 119 aa, chain - ## HITS:1 COG:L0326 KEGG:ns NR:ns ## COG: L0326 COG0571 # Protein_GI_number: 15672784 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Lactococcus lactis # 5 110 3 108 231 107 50.0 5e-24 MVSTKFKNYLFEEYGIKFKNETLLEEAFTHSSYVNEHPKESVGNYEKLEFLGDAVLELAV SDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGHGEEKQVLESERHY >gi|313656766|gb|GL545251.1| GENE 649 653721 - 655067 1522 448 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 428 147 579 600 288 39.0 1e-77 MLANKDAQSQNYTSSLEDIVGMKDYHEGKASTISGIEMPDGENGKTVVIHFNEMKPGMTQ SGNGYIWENAEPYHYLKDVSFKKLTSSDKIRKKPLFFGPYKLAKIVRGQSVTWVPNKYYW RGTPKLSQITASVVSPNSVSQSIKSNKFDVTQVINSQWQNINSTKNVNFIAKVPLQYTYL GFKVGKYNSTLGKNVIDKNAKLNNKALRQAIAYGMNVNQVYKRYSSGLTFRIPTLIPKQF GDYFDKDAKGYSFNLKKGEELLDKAGYKKHGTYRVQPNGKPLTIRLAAMSGSSIQDAVIQ NYIQQWKKMGLHVVLTGGRLIEFNSFYDKLKNDAPNVDMFIGAWSLSSEPSPNDLYSETA QFNYSRFVTKKNNELLSEMDSQKAFNHKYRVKKFHEWQQYMNDQAYVVPLTNSYSIMAIN DKLTGYSLQPSKSNGNGFPNWYYVAYKK >gi|313656766|gb|GL545251.1| GENE 650 655019 - 655498 472 159 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 140 1 145 600 89 42.0 2e-18 MKNLKVFTGLGLLSAVALTATACGSNNNNSNATKQATNFKQAVPTKTAKKGGKVNVAIET DTPFTGIFSNELSTSAIDSEVMQYGGESLFATDDEYRYTNDGAASIKIDQNAKTATIKLK NNVKWSDGQPVVAKDIEFAYLHMRCLQIRMHNLKIILQA >gi|313656766|gb|GL545251.1| GENE 651 655684 - 657444 1873 586 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 585 1 593 600 386 40.0 1e-107 MSKVKVLSSIGLLTGVALTLTACGSNSNSSSNSANSVSKFKNEVPTKTAKSGGTLNYAIE TDFPFTGIFSNELETTSTDSDVMQFGNEALFDTDDSYKITNKGPATFKLDRKAKTVTIEV KKGVKWSDGKQVTAKDIEYAYEIIANKDTKSQRYTSSLADIVGLEEYHEGKSSTISGIEM PDGENGRKVVLHFKEMKPGMTQSGNGYFWEAAVPYHYLKDVAFKDLESSDKVRKNPLFFG PYKLQSIVRGQSTTWVPNKYYWRGTPKLKKIVATVVGTNSVTQSIKSKKFDVAQVINSQW NNVKNTKGVNFIARVPLSYSYLGFKVGKYDSKTGKNVMNKNSKMNNKALRQAIAYAMNVN EAYKRYFNGLAFRVPTLIPEQFSKYFNKNADAYSYNLKKAEQILDKAGYKKKGKYRVQPN GKKLVIYLAARSGSSVSDSITQNYIQQWKKIGLDVKLSSGRLMESNSFYDKVQNDSPNID MFMAGWSLSSEPSPADLYSEQAPFNFARFVTKKNTQLLNEIDSQKAFNNSYRVKKFHEWQ KYMNDEAYVVPVSNGYEITAVNSKLTGYSLKPSKANSVWANVAYTK >gi|313656766|gb|GL545251.1| GENE 652 657782 - 658696 995 304 aa, chain - ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 20 302 19 300 302 277 51.0 2e-74 MAKDKSTKKEKTAAKVSLPPSGFKVVWREIKKDKVAMGALIIIIAVLLFTFVGSLFLNKS QVTEVNIADAYYSWGEAGHIFGTDDGGRDILQLLMMGGRNSIMIGLSVTLIIEVVGLVIG LISGYFGGTIDNIIMRIVDFIQILPQMPILIVFAATIPNYNAVTLVLMISLFGWTSSTRY YRSFVLSQRDREYVLASKTSGSSNLQIMFREVLPNISSMIIIDVILMVAGNIGIETGLSF IGYGLPTTTPSLGTLIGYANDPVNVTTRPWLWVPATILLLIISLSINYVGRALQRAGDAR QREN >gi|313656766|gb|GL545251.1| GENE 653 658711 - 659670 1158 319 aa, chain - ## HITS:1 COG:L91252 KEGG:ns NR:ns ## COG: L91252 COG0601 # Protein_GI_number: 15673821 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Lactococcus lactis # 1 319 1 319 319 355 59.0 7e-98 MWKTILRRFLIMIPQIFLLSVLVFFLAKMMPGDPFTGAINPNTDPKEIARLKQQLGLNDA PWVQYTRWVGNLFHGDLGTSYIQHVPVASLIWDRAINTFWLSLFTVILTYLIAIPLGISA GRNQDKWQDQSIQIFNYFTFAIPGFVFYLLGLYLFGFVLNWFPISGSVGSDANGAFGVFL SRIYHLILPGTLVALISTTSIVQYLRTGIVDNKVEDYVRTARSKGVPEKVVFNKHILRNS LLPIAAFFGNTITSLLSGSIILETVFSYPGMGKLFLDSISQRDYTTLTALILLYGILTLV GNLLSDIIMSIVDPRIRIQ >gi|313656766|gb|GL545251.1| GENE 654 659672 - 660643 745 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 270 6 275 329 291 50 6e-77 DMGKEIIQIKDLKVHYPIRSGFWNRITDYVKAVDGVNFSINEGETYGLIGESGSGKSTTG KSIVGVEKVTSGEILYKGVDVTKPANRKKLNYNKDVQMIFQDSMSSLNPRKRIEDIIAEP IRNFENLTTDEERKRVQELLDIVGMPSDAIYKYPHEFSGGQRQRIGVARAVATNPKLIVA DEPTSALDLSVQAQVLNFMKNIQQQYNIAYLFISHDLGVVKHMSENLAIMHRGRLVELGS REEIYKNPMHIYTRRLLSAIPQVDVEHRAENKKHRQAVEKEFQEDQARWYDKDGRVFPLR EVSRNHFVALPEEEIHKIEREGE >gi|313656766|gb|GL545251.1| GENE 655 660644 - 661660 1056 338 aa, chain - ## HITS:1 COG:BH3640 KEGG:ns NR:ns ## COG: BH3640 COG0444 # Protein_GI_number: 15616202 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Bacillus halodurans # 8 335 6 333 340 420 60.0 1e-117 MEKQSDLLLDVQHLHTAYRLQGKFYDAADDVSFTLKRNEILAVVGESGCGKSTIASSIIG LYDHKNTKVTGDILYNELNLVGLNESLFNKIRGNNIGMIFQDPLASLNPLMRVGDQVAET LYYHTDMDESARKKRVIELFNQVGMPRPEEMYRMYPHELSGGLRQRVVIAMAIACKPEVI IADEPTTALDVTIQAQILDLLEDIQKESQSGIILITHDLGVVAETADEVAVMYAGQIVEK ADVKTIFENPKHPYTRSLLHSMPQSDDQDEDLHVIQGTVPSLKNMPRTGDRFASRIPWIP ESEHEENPVLHEVEPGHWVRCTCWKNFHFQDDQEARGE >gi|313656766|gb|GL545251.1| GENE 656 661775 - 662014 374 79 aa, chain - ## HITS:1 COG:lin1920 KEGG:ns NR:ns ## COG: lin1920 COG0236 # Protein_GI_number: 16800986 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 78 3 76 77 57 47.0 5e-09 MNETEIFNKVAELLAEHFDIEADKVTNELNFKKDLDGDSINFLEFVMDLEDAFGAEISDE DAAKLETVGQAVDYIKSHQ >gi|313656766|gb|GL545251.1| GENE 657 662072 - 663076 1176 334 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 1 333 1 330 330 323 51.0 4e-88 MRRIAIDAMGGEHAPEAIIEAVLQAKSQLPNTQFLLFGDEDKIKKLLSDNSNDKQIEVIA TSEVIQDEDEPVRAIRRKKDSSLVVAARYVKEGKADGLVSLGNTGALLAAGIFIVGRIKG VERPGLMPTLPVKNSDLGFNMIDVGANAQAKPEYILKWAEMANFYAEKVRGIKNPKIALL NNGAEYDKGDDIHKEAYQLLKESDLNFIGNIEGNELLDGKADIVATDGFTGNAVLKNIEG TSSVIIHLIKDALVSGSLMTKLGALLIKGALKGVAKKFDTAKYGGAVLLGLNAPVVKTHG RSDKRAIYYTLLQIDKMIEEDLIKLFVEDFSKQD >gi|313656766|gb|GL545251.1| GENE 658 663085 - 665109 1394 674 aa, chain - ## HITS:1 COG:L0262 KEGG:ns NR:ns ## COG: L0262 COG1200 # Protein_GI_number: 15674226 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Lactococcus lactis # 5 655 3 656 666 619 51.0 1e-177 MLNNLFEPVTKLKGVGPKTAAALESLSIYSVYDLLFYFPYRYDDLEMIPLDQLNDGQKVL LKGIVATEPFVSRFGYKKSRLSFKLRIDHDIIMVNFFNQPWLKNQLEVGKEVAVYGKYNL AKQSLSGFKFVAAKNEESSLSPVYPVNRHIKQKKLVELIKLALAQKNELMDIVPENIRQK YRLMNDQELVEKMHEPKSPNEAKLAKRSAIFREFFIFQIQLALLTMRPQGRLGTAKKYDL NEIKKLTATLPFELSDDQKKVVNEIFADLHREKQMRRLLQGDVGSGKTVVAVFAIYAAIT AGYQAALMVPTEILANQHFGKIAELLRPFGVRIALLTSSTKAMEKREIYRELADGTLNVV IGTHALIQPSLKFKNLGLVIIDEQHRFGVNQRQKLMIKGENPDLLAMTATPIPRTLALTA YGEMDVSEIRHLPAGRKPIVSEWVTSTHLDQVLAKIKEQLSQGFQIYVVTPLIEESENID LKNAKELCLKLQSYFNHEKVVLLHGQMSGEDKDQIMTDFSEGNIDILVATSVIEVGVDVP NANMMVIFDADRFGLSQLHQLRGRIGRGRTESFCYFVADPKTDIGKKRMEIISSTSNGFK LSEEDLKLRGQGDLFGKAQSGIPEFRLGDLVNDYNTMVVAQNVARQLVKADPDLMENSAL KEVVDYSQKVKEID >gi|313656766|gb|GL545251.1| GENE 659 665114 - 666730 1895 538 aa, chain - ## HITS:1 COG:SPy1885 KEGG:ns NR:ns ## COG: SPy1885 COG1461 # Protein_GI_number: 15675702 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pyogenes M1 GAS # 1 538 12 554 554 531 54.0 1e-151 MVRVATHRMGKNKEYVNNLNVFPVPDGDTGTNMNLTMESGARAVSECQSTSVGELVEALA KGMLMGARGNSGVITSQLFRGMYKATVGKEALNAQELADAFSNGVATAYKAVMKPVEGTI LTVARVAAEDGKNAANDSDDVEVVMKAIVEGAKRALKTTPDLLPVLKEVGVVDSGGQGLL FIYEGFLEGLLGENFSDVYTPDIDEMDQMMSATHEQSQSKLSTKDIKNGYCTEIMVDLTK DVPGKKPFNLEEFRKHLSTLGDSLLAVSDDTIAKVHVHTEHPGEVFTYGQQFGELGKIKI DNMRIQHETIVDEAAKEEEKVDFAVIAVCSGNGVRQLFESGGVNRIISGGQTMNPSTQDI IDTIKKSGASKAIILPNNGNIIMAAKQAAEVCDIPVGIVQTKTISQGLTAMLAFNPDASV EENVEAMNEEASMVVSGEVTRAIRDTNINNVEIHKDDFMGIIDGNIEIDKPDLIEATCAM IEKMLDEDSEIVTIIYGRDSNKKQAEQVQAKLEEDHDDLEFEIHDGGQPVYSFLVSVE >gi|313656766|gb|GL545251.1| GENE 660 666791 - 667153 520 120 aa, chain - ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 120 1 120 121 118 55.0 3e-27 MAVKIKTKHGLIDVTNGVIATVVGSAATANYGVVGMASKNAIRDGVNEILNRANYKRGVV VKSVDNRITVDVYIIVGYGLKISEVSRNVQDSVKYNLEQQLGIQTKSVNVIVQGVKVLDE >gi|313656766|gb|GL545251.1| GENE 661 667330 - 667515 312 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238854787|ref|ZP_04645117.1| ribosomal protein L28 [Lactobacillus jensenii 269-3] # 1 61 1 61 61 124 100 1e-26 MAKDFVTGKKTTFGNKRSKALNSTRRAWKPNLQKVRILVDGKPKRVWVSTKALKSGKVTR V >gi|313656766|gb|GL545251.1| GENE 662 667584 - 668258 665 224 aa, chain - ## HITS:1 COG:L76216 KEGG:ns NR:ns ## COG: L76216 COG1564 # Protein_GI_number: 15673806 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Lactococcus lactis # 4 217 3 207 211 149 42.0 4e-36 MKGISLLGGPLELIPEGFFEEQKNNNQLLLGVDRGSLFLVEKGLIPDLAIGDFDSLKKEE LVKIEKVVKDIRYSNPVKDLTDSELMIKSAFENYHLTSLEVYGATGGRLDHFLVNLFTFL KPEFQVYAPKVTLIDRQNIIKFFLPGKHYIKPVEGYKYLGIVNLTDVENLSIQGAKYPLK DYNSTYPISFASNEFVAGKTVEIYFEKGTVAVIYSKDLDRFANI >gi|313656766|gb|GL545251.1| GENE 663 668245 - 668907 731 220 aa, chain - ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 3 218 4 218 218 201 48.0 8e-52 MIIAPSILNADNLNLGRDIKKATQAGITRFHIDIMDGHFVPNLSYGPQLVQDFKREFPLV EAEIHLMSDNLETMIPAFTQAGADLLEFHFEASKKVEYWLDYLASNGVKTGLVLNPETDV NVLKPYLKELKQVLLMSVHPGFGGQKYIPETADKIAQLKQLMKDANVNIPIEVDGGINDK TAPLAEKAGANVLVCGSYIFKNGDIAGQIRKLEGILNEGH >gi|313656766|gb|GL545251.1| GENE 664 668941 - 669828 609 295 aa, chain - ## HITS:1 COG:lin1933 KEGG:ns NR:ns ## COG: lin1933 COG1162 # Protein_GI_number: 16800999 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 4 293 3 291 291 238 44.0 1e-62 MITEGIVISLIAGYYDVMTPNGLVRTRARGVFRKRQEKPQVGDLVKVQLDEHGTNYLIEV FERKNRIGRPAVSNVSHVLLVISAVEPDFSVNLLDRFLTFFEWQKVPVTIYLSKSDLATK EQLEAIKSALSYYEEIGYSVFSNKKKLEKALLSLIKDNEIWTLAGQSGAGKSTLLNFLKE DAGQDTGEISKSLNRGKHTTRSVQLFTYSGGFIADTPGFSAIDLGPIKIKELQNYFVELN KASKFCKFRGCQHIHEPKCEVKELLSKNKIAQFRYDDYLALRTEIEEQRLPEYLK >gi|313656766|gb|GL545251.1| GENE 665 669825 - 670418 603 197 aa, chain - ## HITS:1 COG:lin1934_2 KEGG:ns NR:ns ## COG: lin1934_2 COG2815 # Protein_GI_number: 16801000 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 186 136 303 315 88 35.0 9e-18 MSQSVEAGERVNAAKTTIILVVSKGKYKKNKPKQFKVKDLTGYSLKKVQDYAEDNGLTLK IDEHYSDSVEKGLIISQNPTVGTTMNRGDTLEVVVSKGKQESSSASSNSSSSGSSSDSSS VNKSVSISYDSSKTNNGNGNHIQIYIADDNHQISNIYRDFYITHDTTLNIPFSVKNSSGT LIVVNDGTTVTNERVTK >gi|313656766|gb|GL545251.1| GENE 666 670562 - 671821 1437 419 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 5 325 4 321 342 335 54.0 1e-91 MITQGYLLGERYKILDTLGEGGMANVYLAEDIILQRKVAVKVLRLDLQRDPQTLKRFTRE AMSTSELSHPNIVSVLDVDTDQGLPYMVMEYIKGPDLHQYLHDNYPLPFTEIIRIMDQIL SAVALAHKHNIIHRDLKPENILIDKDTGKIKIADFGIAVALNQSTITQTNSTMGSVHYMS PEQTKGGLVTKQSDIYSLGIILYELLAGKVPFGGETAISIALKHLKEPLPDLKKVVPNLP QSLENVVLCATAKDPRDRYESVLAMKADLDTALNPERANEPVFKPSHNPALEETRVIPTV IPNEDAALKNIKEEKKQESKPAKKKFWKTFKEHKIWLISSIFAILVVLFCLILALSKTNQ TTVPDVSNFNEEQAKQALQAAGLKVGEIEYQHSDTVAKDKIIKTLPDKGLSIEKVRVLI >gi|313656766|gb|GL545251.1| GENE 667 671818 - 672567 688 249 aa, chain - ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 2 241 1 238 246 192 42.0 6e-49 MIETAFASSIGRVRKTNQDFVQVYENQKKIKMAVVCDGMGGHQGGDVASTMAVSHLGHDF AKTDFETAEMAKKWLQVQLKLENETILRAADRFPDLNGMGTTVVLAICFEKNALIAHLGD SRAYLYSGEKFIQLTEDHSLVNELVKMGQITKEQARNHPQKNIITQALGVSSTINPEFNR PIIQENDVILLCTDGLTNSLEDDQIHQILATKSLSLNERCKKLITEANRLGGGDNITVCL LLCKAGEEK >gi|313656766|gb|GL545251.1| GENE 668 672573 - 673442 667 289 aa, chain - ## HITS:1 COG:lin1936 KEGG:ns NR:ns ## COG: lin1936 COG0144 # Protein_GI_number: 16801002 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Listeria innocua # 1 286 149 440 446 238 43.0 1e-62 MPEWLVQYFVKNWGLKRTEKLLISLNERAENSIRVAKGLDHSKIVNSLQKQGFSVNESTL ADNCFIVDHSIVNTNEFKSGQITIQDEAASLVVDCFDLRENDHVLDTCAAPGGKTTQLAE NLSHGKVTSLDIHKKKLNLIKKYAQRMHVDDRVETLALDARKAAEHFSDTKFNKILVDAP CSGLGLLRRKPEIRYDKTIKDVHNLARIQLAILDNVAQLLKKNGELVYSTCSITIEENEQ VIAEFLKKHPEFELMPITLSKVQSKSSLKILPDTYGSDGFFIAKMKLRG >gi|313656766|gb|GL545251.1| GENE 669 673619 - 673885 302 88 aa, chain - ## HITS:1 COG:BH2507 KEGG:ns NR:ns ## COG: BH2507 COG0144 # Protein_GI_number: 15615070 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Bacillus halodurans # 4 88 5 91 450 70 42.0 7e-13 MTNSARAVALATLIKVFKQKSYSNLSLSHALNENNLSQKDQAFVTQLVYGTIQYQLFLEY QLKDLLRTKLKEDYLKPLLLMSVYQLIF >gi|313656766|gb|GL545251.1| GENE 670 673878 - 674822 1131 314 aa, chain - ## HITS:1 COG:SPy1628 KEGG:ns NR:ns ## COG: SPy1628 COG0223 # Protein_GI_number: 15675504 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 311 1 309 311 294 48.0 2e-79 MTSVIFLGTPNFGATVLEGLIKNSYQVLAVVTQPDKKVGRKQKLTPSPVKEMAQKYDLPI YQPARLPRSEELDTLINLHADLIITAAYGQFLPTKFLKSAKIAAVNVHGSLLPKYRGGAP IQYSLINGDKETGVTIMEMVKKMDAGDMYAQEKLSIEPDDTAGSLFEKMAILGRDLLLKT LPSIIDGSCDKKPQDTSKVVFSPNISKEQERITKDMTASQVHNLIRGLNPDPGAYLIING QRMKVWASEVTNETTQFPAGALVDNHKRFAVSFADNTVLNLTEIQPTGKKRMAGRDYMNG KGSSLKLGEVIIDD >gi|313656766|gb|GL545251.1| GENE 671 674839 - 676293 1122 484 aa, chain - ## HITS:1 COG:L0292 KEGG:ns NR:ns ## COG: L0292 COG1198 # Protein_GI_number: 15673879 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Lactococcus lactis # 1 480 296 775 779 622 60.0 1e-178 MLVPEISLTPQMVSQVNARFGKEVAVLHSGLSEGEKYDEWRRIRRGEARVVVGARSAIFA PLSNIGLIIIDEEHEASYKQEDTPRYHARNVAIWRSKFHNAPLVLGSATPSLDSRARAQK GVYKLLRLTKRANQKALPEVKIIDLKSVEFAGSQFDLSTDLVKAIKEKLLKNEQIILLLN RRGFASFMLCRDCGFVLQCPNCDLSLTMHKDTRQMICHYCGFHQPIPNRCPNCQSSKIRF LGTGTQKVEEELTELLPGARVLRMDVDTTRRKGSYKEILDKFGAGNADILLGTQMIAKGL DFPNVTLVGVINADTALYLPDYNASEKTFELLTQVAGRAGRAEKSGQVMIQTYNPDHYAI KLAQKQDYETFYQTEMKVRYQGNYPPFFFTNLISVASKNEQNAAKEAFAIKRILMRNLHA PTIILGPTPSAISKINNQYYYQILVKYKREPKLNELLHQIQDLAQEKQKYGLNIYIDTQP GRIF >gi|313656766|gb|GL545251.1| GENE 672 676698 - 677231 591 177 aa, chain - ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 2 172 4 176 797 103 37.0 2e-22 MIAQVIVDVAAKQTDRIFEYNIPKQISDLTIGARVVVPFGPRKVQGFVVGLTKTSQYQGK LKNLLLVVDEQAPLTPELVQLSEYLAKTIFSYRISILQTMLPSVMRAKYRKILVPATREA EDLPIFKEKSIDLAKVTNLEEIAQINQLLKKDLAKIEYAVENKAKEKTKKFIILHLL >gi|313656766|gb|GL545251.1| GENE 673 677283 - 677501 362 72 aa, chain - ## HITS:1 COG:SP1737 KEGG:ns NR:ns ## COG: SP1737 COG1758 # Protein_GI_number: 15901569 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pneumoniae TIGR4 # 6 66 4 63 103 64 63.0 4e-11 MKITYPSIDKLLDRVDSRYSLSVLASKRAHELEAGSPAALEKFKSSKSVGQALEEIAAGK VIIDPDHKTNID >gi|313656766|gb|GL545251.1| GENE 674 677505 - 678119 716 204 aa, chain - ## HITS:1 COG:L149828 KEGG:ns NR:ns ## COG: L149828 COG0194 # Protein_GI_number: 15673881 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Lactococcus lactis # 1 203 1 202 205 243 61.0 2e-64 MASKGLLLVLSGPSGVGKGTVKSAIVETKAFPFEYSVSMTTRKPRPGEVDGKDYYFVSVD RFKEAINQGELIEYNQYVGNYYGTPLAPVKKMLSEGKDVLLEIDVNGAQKVRQQMPDGVF IFLTPPDLHELKHRLVHRGTDSETVIQNRMKQARNEIMMMSDYDYAVVNDTVANAVSHIK AIVEAEHVSVKRVIDSYRKMVEED >gi|313656766|gb|GL545251.1| GENE 675 678329 - 678634 333 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854798|ref|ZP_04645128.1| ## NR: gi|238854798|ref|ZP_04645128.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 101 1 101 101 161 100.0 2e-38 MKNLQLIGKNLVTKTFNLFEDIFAYDQDQLSIVGQKQHYILTNLSYALLHRSYILLTLKD NTNIIGKIIKVGPNNKIIIKNIDTDAINIVNIPDIFRTDIA >gi|313656766|gb|GL545251.1| GENE 676 678689 - 680374 1853 561 aa, chain - ## HITS:1 COG:SP1202 KEGG:ns NR:ns ## COG: SP1202 COG0497 # Protein_GI_number: 15901065 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Streptococcus pneumoniae TIGR4 # 1 561 1 555 555 385 41.0 1e-106 MLVELDIQNFAIIKNLKIKFKKNMTVLIGETGAGKSILIDALSLLLGHRAQSEMIRSGEK KAIVTGLFTLNETQKQIVENLCDEYGLPLDGDDLIISRELSNKGRNVIRINGQLTTITVL AQIGQYLVDIHGQSDQQILMNQDRQIDLVDEYAGQDFKVELENYQTLFKKWIELTNKLKH LQKGAQELAQRHDILQFQKDELDSADLTDIDEDEKLEQEYAKLNNYQKIAETANYLVQLF DDDEQGLTTLLGNAQNAADELAEYGSDFKNMAQSLSDGVYSLSDSRSELGNIMDNLDFDE ERFQYVTNRLDTLNNLKKKYGPDLSDVFDFYQKISKELSQFEMGGLDEDKLQKEIGQLED KMSVSAQKLHQLREKTSSQLEQEIKSELADLFMEKARFSIRFVQSKTFNELGTDEVAFYI APNPGEELMPLVKIVSGGEQSRLILALKTIFSKVEPVGTMVFDEIDTGVSGRVSAAIGKK MHSIGQQKQVIAITHSVQVAASSDWRYKIEKHVEDGNTYTQVHMLSDQDSVKAIAQMMAG INITSAAEQNAADLIKRSHEK >gi|313656766|gb|GL545251.1| GENE 677 680388 - 681200 792 270 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 244 3 245 274 301 60.0 9e-82 MAKERADVILFKQGLFHSRSQAQRAIMAGLVTDHLHQRIDKAGEKFPEDEHFYIKDDGQK YVSRGGFKLEKALKVFDIDLTDKLCLDIGASTGGFTDVALQNGAKKVYALDVGYNQLAWQ LRDDSRVVVMERQNFRYSKSADFTDGLPDFAMTDVSFISLDLIMPPMFEILKDQCDAVCL IKPQFEAGPEHVGKNGIVRDHSVHEAVIKHTIEKALEIGFDVLGIDYSPIKGGKGNIEFL IHLRKNLADPSQLLWDGDIKSVIDAAVNQL >gi|313656766|gb|GL545251.1| GENE 678 681200 - 681961 830 253 aa, chain - ## HITS:1 COG:alr0213 KEGG:ns NR:ns ## COG: alr0213 COG0142 # Protein_GI_number: 17227709 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Nostoc sp. PCC 7120 # 1 235 49 288 309 179 44.0 3e-45 MAYSVMAGGKRLRPLLFLATLISLGKEINEKEIRVACGIELIHTYSLIHDDLPAMDNDDY RRGMLTSHKKWGEAEAILAGDALLPMGLEWIASAKNAEMVAVMANAIGPNGMAGGQYLDI DSTNNEAVKEDNNFINRMEWLKTGCLIKASVELATIYANANDLLRKNLVDFSANFGRAYQ IYDDLVDVIQTSQEAGKATHKDEEEGKNNTLTLLGIDQSREELKELISAAKSNLDGLNSE VLLGFLDLYKKVL >gi|313656766|gb|GL545251.1| GENE 679 682067 - 682309 400 80 aa, chain - ## HITS:1 COG:SPy1499 KEGG:ns NR:ns ## COG: SPy1499 COG1722 # Protein_GI_number: 15675403 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII small subunit # Organism: Streptococcus pyogenes M1 GAS # 3 71 2 70 71 59 53.0 1e-09 MPSKKNNFEEQLADLEKIVNNLENGNVPLDEALEQFQAGVKISRDLEKKLTAAEETVAKL IDKDGSEHELDPQNAAAPEE >gi|313656766|gb|GL545251.1| GENE 680 682451 - 683659 1019 402 aa, chain - ## HITS:1 COG:L0254 KEGG:ns NR:ns ## COG: L0254 COG1570 # Protein_GI_number: 15672836 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Lactococcus lactis # 6 373 3 368 417 323 47.0 4e-88 MESHDKYLSVSDLNYYINLKFKNDPYLHQVFLKGELSNFRYRRNSHQYFSLKDEKAKINV VMFRSAFEKLKFKPEEGMKVYVSGYIGVYPPQGSYQFYAQTMEPAGLGELYERLRQLQEK LSKEGLFAAEHKKRLPRFPDKIAVVTSASGAVIHDIMVTANRRFPHAEIDLFPAQVQGET AAASLVNAMEQIKERADEYDVMIIGRGGGSLEDLWPFNEEEVVRSVYSMPMPVISSVGHE TDTTLCDLVADARAATPTAAAEYATPNLSDELAGLHQLQSRLLTSMQSCIRERKQALQRI QNSPIMREPMRLYDQQAQSVDQLAGRLMQIIKVILQNNRQNLKISEQKLLAQSPKRLLER TKQSNDYLNQRLFSAMKTFLKDKRTLFNNKSKPLKISVLLKC >gi|313656766|gb|GL545251.1| GENE 681 683646 - 684497 890 283 aa, chain - ## HITS:1 COG:SP0825 KEGG:ns NR:ns ## COG: SP0825 COG0190 # Protein_GI_number: 15900713 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pneumoniae TIGR4 # 1 271 1 273 285 271 53.0 9e-73 MGEILDGKALANVLSEEIKEKVKVMTASGIKPHFCVINIGDDPASKVYVRAKKRRAEKLG IDQEIFQLPAETTEEEALTLIQKLNKDPQINGVMVQLPVPSQINSDHLIEAINPEKDVDA LTATNVGRLWQGTHFVKPATACGIIDLLDHYKISIDGKKAVIIGRSNIVGKPLAALLLER NATVTLAHSHTKNLVELTKQADILVAAVGKAKLVTEDMVKEGAVVIDVGINRIDGHLVGD VDFENVKKKASYITPVPGGVGPLTVESLMQQVVALTRRQNGKS >gi|313656766|gb|GL545251.1| GENE 682 684544 - 684945 486 133 aa, chain - ## HITS:1 COG:L92686 KEGG:ns NR:ns ## COG: L92686 COG0781 # Protein_GI_number: 15672676 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Lactococcus lactis # 40 130 233 322 323 74 42.0 5e-14 MSQHDSRRIAMQAIFLANGEPDLTIEQVETKVAKSLDLKEIPAYAHEIIAGVLAKRPEIE ADISKYLKKGWRLERVNRISVAIMEVAIFEISQSDAISAPAAVNEALILCEEFDDPKSKS FINGILANFMPSK >gi|313656766|gb|GL545251.1| GENE 683 684945 - 685391 553 148 aa, chain - ## HITS:1 COG:BS_yqhY KEGG:ns NR:ns ## COG: BS_yqhY COG1302 # Protein_GI_number: 16079489 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 17 135 18 134 135 82 41.0 3e-16 MADSSTILLTSNQAGDEIKIDLSVLEVILAIAAEKVDGVAAMRGSLKSGLNWVLGRQDRG KGVAVSVNQDHKIVADVYAYFDAGVNVPKVAAKIQEKLAGQLSQMTDLTLTTVNVHVVGL IFPDEKAHVTKVEEDKKELFPESEKDGE >gi|313656766|gb|GL545251.1| GENE 684 685416 - 685985 753 189 aa, chain - ## HITS:1 COG:lin1392 KEGG:ns NR:ns ## COG: lin1392 COG0231 # Protein_GI_number: 16800460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Listeria innocua # 3 187 1 185 185 251 65.0 4e-67 MTMISVNEFKNGLTIEHNNDLWRIIEFQHVKPGKGSAFVRSKLKSLRTGAVQDYTFRSTE KVNTADIQTKPMQYLYNDGSSYVFMDMNTYEQLEIPNAEVDRESKFLKENMEVNVIMHGS ETLGIDLPNTVDLEVAETEPGIRGDTSSGGGKPATMETGLVVNVPFFINAGDILTINTAD GSYVSRANK >gi|313656766|gb|GL545251.1| GENE 685 686054 - 687160 1160 368 aa, chain - ## HITS:1 COG:SA1360 KEGG:ns NR:ns ## COG: SA1360 COG0006 # Protein_GI_number: 15927110 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Staphylococcus aureus N315 # 12 366 2 351 353 256 39.0 4e-68 MTDSLLLTLTQARINKVLELMKQYNADAFLIFNQANYRYLTNFTGEEAQLILTNSGDRYL LSDSRFAGQIKAQASGELTAIMKQTSEVNEISRVLKKLAVKKLIVEGEFISATEFSELEE ANPDCQFVLVEELVEQVRNVKDELELQALQKAISISLESFKEILPMIKPGAVERDIAAKL DYLFKLNGGDGPSFETIIASGVRSSWAHGVASDKVIEQGDLVVCDFGSFYDGYTADITRT VAVGNVDVELEKIYKIVHEAQRRGIEAAVVGNTGSDVDKAARDYISEQGYGKYFGHGIGH GIGLEIHELCMPALPFKKQKLVNNMAITVEPGIYLPEKGGVRIEDDILVNGESPETMSSF KKDELIHL >gi|313656766|gb|GL545251.1| GENE 686 687225 - 687524 511 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526027|ref|ZP_03956076.1| 50S ribosomal protein L27 [Lactobacillus jensenii JV-V16] # 1 99 1 99 99 201 100 9e-50 MMMNNFSTMNLFAHHKGGGSTANGRNSAGRRLGAKRADGQAVNAGSIIYRQRGTKIHPGK NVGIGGDDTLFALVNGVVKFERLGKTRKQVSVYPVEEAK >gi|313656766|gb|GL545251.1| GENE 687 687543 - 687905 603 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239632610|ref|ZP_04675641.1| ribosomal protein L21 [Lactobacillus jensenii 1153] # 1 120 1 120 120 236 99 2e-60 MKAPGLASLSIFYGGVQMYAVIKTGGKQYKVAKGDSVFVEKLDVEAGEKVTFDQVILVSD GKDVKVGTPLVEDAKVVATVEKQGKEKKVVTFKYKPKKHSHSKYGHRQPYTKVTIESIEA >gi|313656766|gb|GL545251.1| GENE 688 688061 - 688327 197 88 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTPVKTPVKIFLKIAFLTDASLLRVLINALSAKDIIIAKSVIGIRKFIGDKVMAHRGIMA PAIKEQKELKAALIGVKPSVFSVLNPHQ >gi|313656766|gb|GL545251.1| GENE 689 688287 - 688607 226 106 aa, chain - ## HITS:1 COG:L104745 KEGG:ns NR:ns ## COG: L104745 COG1814 # Protein_GI_number: 15673457 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Lactococcus lactis # 23 95 12 84 229 79 56.0 1e-15 MKRAFTFSRFIKIKSQCFWDKLNIIRAGILGANDGIISVSGIVLGASGANLDSKTLLIAG LSGMLAGACSMAGGEWMSVSTQRDILMKKLEKQTIDEDLKLKKQMA >gi|313656766|gb|GL545251.1| GENE 690 688707 - 690110 1609 467 aa, chain - ## HITS:1 COG:SPy0290 KEGG:ns NR:ns ## COG: SPy0290 COG0719 # Protein_GI_number: 15674464 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 11 467 16 472 472 658 68.0 0 MTDEAIKNLGGQYQYGFKDDIEPIYTTGEGLSEEVVRKISAAKNEPKWMLDIRLAAYETY KKLSLPTFGPDLTKLDYEHINYFRRDSDFVARKWEDVPEDIKKTFDKLGVPQAERKYLAG SSAQYESEVVYHNMRKQFEDMGIIFMDTDTAVQKHPDLVKKYFGKLVPASDNKLAALNTA VWSGGTFIYVPKGVSCPTPIQSYFRINAGNSGQFERTLIIVDEGAHVNYVEGCTAPNYSA DSLHAAVVEVNVLKDAYCRYTTIQNWSNNVYSLETKRAQALENATMEWVDGNLGSKVTMK YPSIYLNGQGAHGNMLSIAFAGKNIDSDTGATMVHNAKNTYSSTVSKSLCKDGGIADYRG HIRFNEHCDGSFAHVECDTIIMDDKSSSDTIPFNEVLNSNVSMEHEAKVSKISEEQLYYL MSRGISEEKATEMIVMGFVEPFTKELPMEYAVELNRLIQLNMSGGIG >gi|313656766|gb|GL545251.1| GENE 691 690110 - 690553 509 147 aa, chain - ## HITS:1 COG:SP0870 KEGG:ns NR:ns ## COG: SP0870 COG0822 # Protein_GI_number: 15900753 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Streptococcus pneumoniae TIGR4 # 5 146 6 146 146 114 44.0 9e-26 MSFNLTDLYRESIVEAAQAPRHHGQLTKKNASVELHNPSCGDVLVLDGYFKDNKLVDVAF SGYGCTISQASASLMTDHVLGQEISKIKNEVILFSSLITEELSQAQKDQLGDCIMLEGVK EFPARIKCATLAWKAIYQLIENYEGQK >gi|313656766|gb|GL545251.1| GENE 692 690543 - 691028 375 161 aa, chain - ## HITS:1 COG:SP0869 KEGG:ns NR:ns ## COG: SP0869 COG0520 # Protein_GI_number: 15900752 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Streptococcus pneumoniae TIGR4 # 1 157 243 404 408 175 51.0 4e-44 MQPVEYGGEMINEVSEQSADFKAAPLKFEAGTQNVAGAIGLGVAIDYLKQVGITNIEKVD LDLSKYAKNKLEEIDGITIYGHNHGIISFNLDGVHPHDVASFLDADDLCLRAGHHCAEPL MNYLKIPACLRASFSIYNDYSDVDALANSLKKIKEFLENEL >gi|313656766|gb|GL545251.1| GENE 693 691034 - 691738 628 234 aa, chain - ## HITS:1 COG:SPy0288 KEGG:ns NR:ns ## COG: SPy0288 COG0520 # Protein_GI_number: 15674462 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Streptococcus pyogenes M1 GAS # 6 232 8 237 408 251 55.0 1e-66 MKNNYKADFPLLANSDLIYLDSAATSQKPQCVIDALTNYYQTQNANVHRALYGLGEAATA EYEQARKKVAGFINSEADEVIFTKGTTQGLNWIANGFAEQVLKPGDEILISIEEHHSNLV PWQIIAQKTGAKLVYVYLTADLNFDYADFEVKLNSKTKIVALHHMSNVLGNILDISKLAE LTHNFGAYLVVDGAQAAAHTVLDMKKFDCDFYAFSGHKMFGPMGIGVLLVKESC >gi|313656766|gb|GL545251.1| GENE 694 691728 - 692957 1561 409 aa, chain - ## HITS:1 COG:SP0868 KEGG:ns NR:ns ## COG: SP0868 COG0719 # Protein_GI_number: 15900751 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 2 409 4 420 420 369 46.0 1e-102 MESVETLAKKRLEPTWFEEIREKASQLIGKTPYPDFKKLKYKDWDLHLTGNFVSTETFTA NANVAQAGENLAQINLPDEYRKKGVIVADFHEALQNYPKLVQKYFMTKGLKASDDEFLAE HVAYLQSGLFIYVPKDVQVEIPLTCEYLQKAALASEYVHHVLLIVDEGSSFSYIEKLTSQ GNEKSKVNFVCEVIAKKNSHVHFTSIDNLAENVTSYLNRRGYLEKDAKVDWAMALMNDGR TLGDFNSDLVGDGSHAELKAVGISTNSQIQGINTRVTNYGNNTIGHILQHGVSLDKSTLI FNAVGHIMKGSKGSDAEQESRILMLSQGARGDANPILLIDDNDVMAGHAASIGRVNPEQL YYLMSRGLDKKMAERVVIRGFLSPVLEEIPTADLKQVFSDLIERKISEK >gi|313656766|gb|GL545251.1| GENE 695 692969 - 693760 1082 263 aa, chain - ## HITS:1 COG:L34806 KEGG:ns NR:ns ## COG: L34806 COG0396 # Protein_GI_number: 15673775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Lactococcus lactis # 1 257 1 253 256 331 63.0 7e-91 MSTLEVKDLYVSVQDNNEEKQILKGLNLKMSTGEIHAIMGPNGTGKSTLSSTIMGDAKYH INSGDILLNGESILDWPVDQRARAGLFLAMQYPAEIPGVTNAEFVKAAVNARRPKNDPVP MGEFMKELQSTLKTLDMTMEMAGRYLNQGFSGGEKKRNEIMQMMMIKPSFAILDEIDSGL DIDALKVVSRGVNLMRGDNFGALLITHYQRLLNYIEPDFVHVMMGGKIVKTGDASLAKRL ENEGYAKLRDELGLDIKLVDEDA >gi|313656766|gb|GL545251.1| GENE 696 693898 - 694221 476 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260664696|ref|ZP_05865548.1| ## NR: gi|260664696|ref|ZP_05865548.1| predicted protein [Lactobacillus jensenii SJ-7A-US] predicted protein [Lactobacillus jensenii SJ-7A-US] # 1 106 16 121 206 124 99.0 2e-27 MPNEEQPNVTNNGQEVKPEQAGNAEPKPEKQDDGKDYDKLTSELEKLKNRIGKEQHEKHV ANDRIKELQAELDKYKQEQVDKNPEKKQDETAKQLEELKKKNEELNF >gi|313656766|gb|GL545251.1| GENE 697 694330 - 694575 345 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313472323|ref|ZP_07812815.1| ## NR: gi|313472323|ref|ZP_07812815.1| hypothetical protein LBJG_01251 [Lactobacillus jensenii 1153] hypothetical protein LBJG_01251 [Lactobacillus jensenii 1153] # 1 81 17 97 97 140 100.0 3e-32 MSDKEDYSHRFTEDFEFATKDLEKVWPKKVEGALRFWKRKHDAGRVPDDYYEKTREALLK SLDDWKKDTVNLNIIINLSKN >gi|313656766|gb|GL545251.1| GENE 698 694568 - 696085 1179 505 aa, chain - ## HITS:1 COG:SPy0975 KEGG:ns NR:ns ## COG: SPy0975 COG5585 # Protein_GI_number: 15674985 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 3 310 5 308 541 127 29.0 6e-29 MTRSDYWKNRDELEKEANQKYINQDSAYLKELEAHYNLMLDNINKQIDAEYSSLANRNHV SIDLAMQQVSQMDVSIYSTKAKQIVEKAAKIKNKVSYSDYPDAVNQELRVYNATMRINRL ELLKANVGLEIQKVGLEIYNEASNRLAQRYKTESKRQAGILGLNEPADRLYASPDMRNVI NATVKGATWSQRLWANQQGLRYAVNQLLTTGATNSNRQKLKELLQTTVNNWRYVTQRLIN TELARVQYKAQKDSITKADYKYVKWIAEPKACSTCNRIARTDNGWGKGVWELEKVPDIPQ DTHPNCRCAISAHWVSENKEEARTTDQSPLTSEEMEKIIGFDKVAALKQYMSAESYLLND CLRNDVKLSDDQQKLVNNLDEALAKLPKYRSDKPVSRDFSQSMSMYDIEDAKEIVKSWKE QGYYQDKAYISTSKGHYAEGEELIHMIIKKQHSGVDLSHIDASIGANDKESEVLFPRNTR FKFINWHYDKIDKKYVVFVEETNNE >gi|313656766|gb|GL545251.1| GENE 699 696072 - 697325 710 417 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0783 NR:ns ## KEGG: PEPE_0783 # Name: not_defined # Def: phage portal protein, SPP1 GP6-like # Organism: P.pentosaceus # Pathway: not_defined # 4 417 53 464 467 424 54.0 1e-117 MDYYLGHHPVLEQPAKQTGADNRLVVNLPKYLVDTYNGFFSGIAPKISLDDDKENQKLQD WNNTNSFVDKLNEISKQADIYGKSYAFVYQDEDSQTRVTYCSPSHAFMVYDDTVNREPLA FVRYHYDNSSDATAKGTIYYADASYDFVGPAINPEPTPNLYKLVPAVEFYENEERQGVFD GCITLINELDRALSQKANQVEYFDNAYLYMLGIQLEKDRDTGQPMLDLKNDRFIYAPADT AVNGKIGFVSKPDGDNMQENLINRLTEWIFQTAMIPNMNDQAFSGNSSGVALQYKLLPMK NRASNKERKFVHSLRHLYQIIFSVGTVLPDSSKNKWQDLSFQFTRNMPANIADEVNSAVN ASGIVSKETALSLLSFIDDPKSEINRMEKEKDEEMKRVSQLSPAAMDFQKVNSDDEK >gi|313656766|gb|GL545251.1| GENE 700 698178 - 699365 1306 395 aa, chain - ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 392 1 394 395 420 53.0 1e-117 MKKVLAINSGSSSFKYKLFGLPDETVLAEGLGDRIGLAGSTFEMKFGNGQKYCEEVALPD QETAVKILLDWLKKYDVVNDLTEIVGVGHRIVSGGEEFTDSAIIDEKNLQKIFDLTDYAP LHNPAEGRGIKAFMNLLPGVPQVGVFDTSFHQTMDEVHYLYSVPFEYYEKYKARKYGAHG TSVRYVANRTAELLHRDLSDLKMIICHLGSGASITAVKDGKSFDTSMGFSPLAGVTMGTR SGDVDASLIQFIMDKEGIKNIDDMIDILNHKSGLLGISGISSDMRDLESSDTKRAKLARD IFVNRVIRYAGSYAVEMGGIDALVFTAGIGEHDANIRAGIMKLFECMGLDPDFEANKTNG EKLISKKGSKIAALIVPTDEELMIERDVVRLAHLD >gi|313656766|gb|GL545251.1| GENE 701 699398 - 700261 822 287 aa, chain - ## HITS:1 COG:BS_ytxK KEGG:ns NR:ns ## COG: BS_ytxK COG0827 # Protein_GI_number: 16080000 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Bacillus subtilis # 33 287 79 329 329 177 37.0 3e-44 MGAPDKEAVALLSKKYQELNYDKLPSTQKYLVFTLLTLKAMKEDGRNYSQMPTPPVLATV VAMVWDKLITKTELSVVDPAIGTGSLLYTVIDQLVQSHHSQNQYRLAGIDNDESMLDLAD VGAHLNNYKIDLYCQDSLENWLIEKPDVIVSDLPVGYYPIDKNAKNFATQAKEGHSLAHE LLVEQTIKNLAPAGYAFLLVPNSLLGGKLGAEFMPWLAKKVYLQAVVQLPNDLFQNPLNQ KSLLVFQNHGENAQSRDVLLAKLGSLKEEKSLVDFNQKLNEWYTKKR >gi|313656766|gb|GL545251.1| GENE 702 700584 - 701099 354 171 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1271 NR:ns ## KEGG: LGAS_1271 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 7 148 1 149 172 90 32.0 3e-17 MELNMKIKQVKGFLLVEAIISIAITLLCLMMLTNLLGLFKQYRQVEHYGNELVLSYVQLN NFIETSDYIEIDQKESNSKKVIFKREEAGKVTNYVLEYYNKSMLRLTASQGGHIPLLMKV KQSDFDIDGQKLKVRITEWKNGESEWFFDLSSKNKPADEKMEQDDKSQDKR >gi|313656766|gb|GL545251.1| GENE 703 701077 - 701289 176 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851412|ref|ZP_05556801.1| ## NR: gi|256851412|ref|ZP_05556801.1| predicted protein [Lactobacillus jensenii 27-2-CHN] predicted protein [Lactobacillus jensenii 115-3-CHN] conserved hypothetical protein [Lactobacillus jensenii 208-1] hypothetical protein HMPREF0526_11253 [Lactobacillus jensenii JV-V16] predicted protein [Lactobacillus jensenii 27-2-CHN] predicted protein [Lactobacillus jensenii 115-3-CHN] conserved hypothetical protein [Lactobacillus jensenii 208-1] hypothetical protein HMPREF0526_11253 [Lactobacillus jensenii JV-V16] # 1 70 1 70 70 111 88.0 2e-23 MKQVKGFLLIEAAISLIILLLCLNLFVYCLTETRKIEANSQIKSDRAYAHYILRKYHLHK IKVHGIEYED >gi|313656766|gb|GL545251.1| GENE 704 701276 - 701707 341 143 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1272 NR:ns ## KEGG: LGAS_1272 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 4 141 1 137 138 83 31.0 3e-15 MVKLLRNKIKAFTLIETVITLGIVSMILTIGWLNFSTIKEKMLIDNTSMQVKVILNQVLR QASITNRLYMIDYYRSDNLLIVKEPNGKIKKYSLPEEVKIYNLAKTNIEQTGYIAPKTIT FQTEHYKKQLRIQLKWGKINETS >gi|313656766|gb|GL545251.1| GENE 705 701685 - 702014 434 109 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0611 NR:ns ## KEGG: LDBND_0611 # Name: not_defined # Def: competence protein comgc # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 17 98 13 95 107 77 53.0 2e-13 MKKFKDLVKKLKMQTVKGFTLIEMVIVVAIIAILLILVVPNLTNQKSNAEAKTDEAFQTT LQSQVTLAEEDGKKITSWDQLLEAKYISEKQAKKAQEKFVITNGEVVKK >gi|313656766|gb|GL545251.1| GENE 706 702025 - 702903 736 292 aa, chain - ## HITS:1 COG:L0314 KEGG:ns NR:ns ## COG: L0314 COG1459 # Protein_GI_number: 15674104 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Lactococcus lactis # 6 289 62 353 357 95 26.0 9e-20 MPALWSKKQMLLKKITYLMKQGVNFSQILQQMGFGKTIASQVDLAMMQGNLNECLSQLVI INRLKEQQVKKLKAELSYPITLFVLMIFMLLFMQNFLSSQLGQEDGTANLVFASLIIMAL GISGAIARIAILLKKQDYNALKKLQHYPIIGKITRLYVFYMLSSEFGMMLGAGFTFPEIC KLFARQEEGSLQEYLGRKMLAQFEAGKSMTEIIRNEVFLPDNLLLFVETGANKKELGLKC TILAKGFFRDLTQGLERMIVNVQPICFIFIGICIIGMYLKMLLPMYALMQNM >gi|313656766|gb|GL545251.1| GENE 707 702992 - 703969 821 325 aa, chain - ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 3 315 2 301 313 205 39.0 1e-52 MEVKRWAEDLIISAKELGTSDIFISGKQDFYEVNFRTSKGLIKQEKLSLEFGQEVINYFK FIAQMDISEHRRPQVGSYIFKKDKESIFLRFSVLGEFSGKESLVIRLITEINSNHYFFIE QLDILMGAAIKRGLILTSGPTGSGKTSTMYYLAKKLANNKVVMTIEDPVEVFEPAFLQTQ VNHEAGIDYQSLLKAALRQRPDILIIGEIRDKVTARLAVDAALSGHLVLATVHARSTLQT IARLKGLGIDSVELANCLNCVSYQRLIQTKNGRNACLLDIVSGEKLKKEINKAEPGDFIN WQEKLAELLKEERISVDSFTNFQEG >gi|313656766|gb|GL545251.1| GENE 708 704069 - 705682 1605 537 aa, chain - ## HITS:1 COG:ycaM KEGG:ns NR:ns ## COG: ycaM COG0531 # Protein_GI_number: 16128866 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 8 473 71 536 540 355 39.0 9e-98 MDDLIKDKKYISWPTLTLMAFVTVIGLDDIMYNFQNQGMTVMTSWVLMLFLYVIPYALMV GQLGSIFNKGGGGLSSWVRGTDGEFLGYFTAWTYWAASIPYVVDSANEIIVDVGWAFTGS EKFQDNISNAQFTLLTFLMFIIFIFIERKFANSMEVLSTIGGAMMFIMTMLFVFLAFVGL AKSGGHMATQPFTWKTMIPKFDLKYWTTVGMLIYAVNGSELVAPYVTRMKKPKTDFPKAM IALAIMTAFLTIFGSFALGIYFDAYHMPNDLKMNGSYYVFEAVGQQFGMGHTLLYVYAWT SVFYNAALLAVLLDAMTRMLISDTGDKYMPEFLRKTTKDGLPINGYILTVSLSAFIMLLG VFLPDMNDIFNWLLNLNGIISPGVTCWIFYSFMRVRKDSQKYPSEYVYIKNDKLAYLAGL ALLVVTAVATILGIAPQDVKQFSDIWWYELIINIIAVVVLIGLGTILPGIRRREVEYGIA FSKKQWIIMLALIIGSIVLDVYLGGTKLALRGLYIFIEACLALLICWVVGRKKPIEN >gi|313656766|gb|GL545251.1| GENE 709 705904 - 706782 1030 292 aa, chain - ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 7 287 4 291 302 110 26.0 3e-24 MKIKKIFTIMALALASLTLVTACSQRKSEKSNGIKIVTSTNVYADIAKDIVGKYGSSEAI ISNGDIDPHDFEPTTKSATTINSANIVIANGMGYDNWMSKLAKSNGKTAVKVGEDIMKLK SSDNPHIWYNLDMPEDYVNYLVKKLSKLDAKHASYFKKNGENYLAQIAEIKAIAKTIDGK NSKPVYVSEPVFDYALKAANFKIGNKDFEEAIENETDPSAKIIEKMNKAISRNEIAFFVN NTQASSATVKALVKKCKAAGIPIIEVRETMPNGVSYLKWMTQNYEKLKDVSK >gi|313656766|gb|GL545251.1| GENE 710 706859 - 707374 476 171 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_03675 NR:ns ## KEGG: LAC30SC_03675 # Name: not_defined # Def: integral membrane protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 164 1 163 181 154 51.0 1e-36 MQKFKFSKKEKLSLILALVVFISLFISSSMTYHEQKMSSTTIKTYFGFLEPILSHISINY GGQIHSASKDGLTNFTQFFVRKLAHFSSYFLLGLGLFAGIKRFFLNKVYAFIFVWPVIIS LAVLDEYHQYLTGDRTPSVHDVVLDSAGALCGILLFLLYRLFIKKIHEKRQ >gi|313656766|gb|GL545251.1| GENE 711 707459 - 708187 1194 242 aa, chain + ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 238 1 238 241 285 61.0 5e-77 MSGHSKWHNIQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPSGNPALRLVMDKARAAN MPKDNIQRAIKKAEGGSDEHYDEITYEGYAPGGVAVLVEALTDNKNRTATSVRTAFTRNG GSMGSTGSVAYMFDRKGYIVIDRSTTDADEDQMLMDVMDAGADDLQTSDDAYEIYTDAKE FTGVRDALEKAGYKLADAELTMIPQNTTPVPADKKEQFEHLIDALEDDDDVSNVYTAAAD ED >gi|313656766|gb|GL545251.1| GENE 712 708235 - 708654 434 139 aa, chain - ## HITS:1 COG:L67624 KEGG:ns NR:ns ## COG: L67624 COG0394 # Protein_GI_number: 15674184 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Lactococcus lactis # 1 136 17 144 145 77 32.0 9e-15 MAEFIARNLAQKAGLSDVEFDSKATTRDEINASGIGHDMDRRAKSKLDEKGIPYTYHEAS QVTREDYQKYDYLFCMDEENFLDLNRITGGDPDGKEKKLLTLLGSHKDIDDPWFTGDFET SYRQIKQACEVLIENLKNE >gi|313656766|gb|GL545251.1| GENE 713 708704 - 709411 593 235 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00726 NR:ns ## KEGG: LCRIS_00726 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 226 1 229 238 121 34.0 3e-26 MKKITYLVTKIVVSLAFAFSLLLLLTSSINMKSNNNRLYAKQLITNVANDAGFGNLSSLF ASSGLEDEMLSHLPKKSEVSITPLEVYNLSSTYKKQGKFSSKDLKLPSKTSGEKFISKYI TVGINAGLKRNNEDVKNALNLYQLVYYALLLCFAISIILVLLGKRFAGITAVLSSAGMLV GLLFASEKATTILDEILYSGMKVTISPNFLTAVIVVVIASIVWEVVCHNYRKTQR >gi|313656766|gb|GL545251.1| GENE 714 709412 - 709747 277 111 aa, chain - ## HITS:1 COG:lin2187 KEGG:ns NR:ns ## COG: lin2187 COG0239 # Protein_GI_number: 16801252 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 2 108 6 117 118 58 40.0 3e-09 MIFAGLGAALGAALRYFLTVNIKTNHLWPRATFLINMTGAFCLGLIFALGLDKNIYTFLG TGVLGGYTTFSTLNKELVGLRKDKIGLFYALSSYLLGLLLVYVGFYLGKMM >gi|313656766|gb|GL545251.1| GENE 715 709744 - 710037 327 97 aa, chain - ## HITS:1 COG:lin2188 KEGG:ns NR:ns ## COG: lin2188 COG0239 # Protein_GI_number: 16801253 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 2 94 32 124 129 67 40.0 6e-12 MGTVICNLLGCFLLSFLTYFVIESKRLPEWLNTGLGTGFIGAFTTFSSFELDSLKFINSS QSFMAVTYFLLSIIFGFLCALLGMKVGVFLGKRGISE >gi|313656766|gb|GL545251.1| GENE 716 710229 - 710732 566 167 aa, chain - ## HITS:1 COG:SP0729 KEGG:ns NR:ns ## COG: SP0729 COG2217 # Protein_GI_number: 15900626 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 2 167 495 660 660 188 65.0 3e-48 MGKKSVILTGDNQNVANEIGKNIGVNQVISEVLPNEKANEVKKLQKDAKVAFVGDGINDA PALSTADVGVAMASGTDIAIESGDLVLMQDDLNNLLKALQISKKIFNRIKINLFWAFIYN AIGIPIAAGVFVNQGLVLSPELAGLAMAFSSISVVASSLLLNRTKFN >gi|313656766|gb|GL545251.1| GENE 717 710687 - 712135 1156 482 aa, chain - ## HITS:1 COG:SP0729 KEGG:ns NR:ns ## COG: SP0729 COG2217 # Protein_GI_number: 15900626 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 2 468 17 493 660 436 48.0 1e-122 MTISARKKVIITLLLSSPLLFQMVLMPFHIVFPYYNELALVLTTLILVIAAKDYYISAWA AFKKGQANMNTLVTIGTLVAYFYSIYAMTLGHEVYFESAAVIILFILLGDSLEEGMRKRA NGALKSLLKLQAKDAILLKNGQEIKIPVEKIKVGDVLVVKPAMKFAADGQVVKGTSHVDE SMITGESLPVKKSIGDNVVGATINYDGIIYYQVTKLGQDSLLSQIVEFVKRAQTSKAPIQ RLTDRFSQFFVPIVLIIAIITFEMWYVVFSAPFDHSLIFAVNVLVIACPCALGLAIPTAL MVGTNLSAKHGILIKNGQALEEINQISTVVFDKTGTITKGEPVVTDIVGDVKQVLTLAKN LEQNSEHPLAKAFLNEAAKYDLPSYEVSNFKVHKGEGISGLINGQEIFIGNEKMATNLSQ KLLDAAKKLEQQAKTCAYVGIAGEAIGVVAMQDIPRDNAAFVISELKKWVRKVLSSLVII KM >gi|313656766|gb|GL545251.1| GENE 718 712135 - 712503 444 122 aa, chain - ## HITS:1 COG:SP0728 KEGG:ns NR:ns ## COG: SP0728 COG4633 # Protein_GI_number: 15900625 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 4 122 5 123 123 95 35.0 3e-20 MRIISILIAILIIGFIIWWFFIRKVNDIEAAKTSKNKQKAQIIIQGGYSPSTLVLQKGIP AEVEFVQKDSTACLAEIKSGDLALDKKLAPGEKVSIKVPTDQIGEYNYSCGMNMFHGKVV VK >gi|313656766|gb|GL545251.1| GENE 719 712518 - 712721 75 67 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00725 NR:ns ## KEGG: LCRIS_00725 # Name: copY # Def: transcriptional repressor copy # Organism: L.crispatus # Pathway: not_defined # 1 64 81 144 146 73 56.0 2e-12 MMYQVTKDMFSHMCDMHKGSLLIRLIKEIPLSKSAIKEIQRELNIMEQSAPDTIPCDCLH SKRNHQC >gi|313656766|gb|GL545251.1| GENE 720 712718 - 712990 214 90 aa, chain - ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 21 77 4 60 144 63 52.0 9e-11 MFTNVNNGGEDMVDKILKMNISDAEWEVMRIIWTLDEVKSSEIIDQLSEKMSWTESTIKT LIRRLVDKGLVKIKKKGVLIFIVQPFLKMR >gi|313656766|gb|GL545251.1| GENE 721 713036 - 713869 933 277 aa, chain - ## HITS:1 COG:lin0298 KEGG:ns NR:ns ## COG: lin0298 COG0561 # Protein_GI_number: 16799375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 273 3 267 270 165 36.0 1e-40 MAIKMIATDLDGTLLTSDHRISPKTKKALQRADKMGIKVVPASGRPLPGVLPYLKELNIS GHDNYAILFNGGVVQRLTGEKLISNDLSYADLKEFLHYQKLGKVNLHFMTENHYYTMDRN LSIIMAAASALNNMKIRVRDLEQVPEDFHFIKAEFSGPANEIKAFKQNLPEVFFDKWNAS SSGISSLGTDTIEVNNLVASKGLAIHQLAHRLGIHENEVVVFGDQGNDLSMFENNNFYKV AMGNAISALKERADFVTKDHDDDGIAYALNKILASQV >gi|313656766|gb|GL545251.1| GENE 722 713878 - 714687 881 269 aa, chain - ## HITS:1 COG:lin0298 KEGG:ns NR:ns ## COG: lin0298 COG0561 # Protein_GI_number: 16799375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 269 3 268 270 158 34.0 1e-38 MTIKMLAVDLDGTLLTSHNTIAAETQRMLTLARKQGLKVVLASGRPLSGILPYAAQLGLE GDQQFATVFNGGVAQSYSGKVLFSHEQNLHDVETMKHLQRLAHVNMHFETTEAFYTFDRI INVQMGINASTTNNEIHVCDLKDLKKDFTYIKCEFTGSVDEIARFRNRLPDWVFDQYNVV RSAETIVEFNNPAASKGLALAELASRLGFEEDEVMIFGDEGNDISMFSNPNFKKIAMGNA IDEIKNLADYVTDDNNHNGIAKALKKFVL >gi|313656766|gb|GL545251.1| GENE 723 714781 - 716133 1744 450 aa, chain - ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 1 449 1 446 448 551 63.0 1e-156 MLKYFGTDGVRGIANEVLTPEMAFKLGRMGGYVLTKHKKDGEKAKVLVSRDTRISGQMLE YALISGLLSVGIEVLELGVITTPGLSYLVRAQGADAGVQISASHNPVQDNGIKFFGSDGL KLSDSKEEEIEQLIDAPEDTLPRPSALGLGTVTDYHEGASKYLQFIEQTIPEDLDGIKVV VDGANGASSHLISRLFADLNIDFTTIATHPDGLNINDHVGATHTKKLQEEVVKQGADLGL AFDGDADRCIAVDENGNEVDGDHIMYVIGTYLAEHGRLKKDTIVTTVMSNLGFTKALERA GLKNIRTQVGDRYVSEEMRANGYNLGGEQSGHVIISDYHNTGDGMLTGLHLMLVMKKTGK KLTELLKDFKEYPQRLINVPVKDKKAWKQNEKVMAVIKEVEDEMNGDGRVLVRPSGTQEL LRVMAEGPTQEQTDAYVNKIVEVVKAEMGE >gi|313656766|gb|GL545251.1| GENE 724 716152 - 716664 454 170 aa, chain - ## HITS:1 COG:lin2224 KEGG:ns NR:ns ## COG: lin2224 COG4856 # Protein_GI_number: 16801289 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 170 149 320 452 59 25.0 3e-09 MPDAYTIGTAKADPSVVSVTGAKSEVNQINKIIAKVVLPTNTTKTFEQQVMLVAEDKKGS QLNVVINPLAVNVKIPITLPKKTVKIKLNPKNESSDKVYSLTAETTSVTIYGKSSALKKI KELDTDVDLKNVSSSQTKKIKLKLPNGVIKASEDVVAVRITVANSTQSGS >gi|313656766|gb|GL545251.1| GENE 725 716730 - 717140 440 136 aa, chain - ## HITS:1 COG:BS_ybbR KEGG:ns NR:ns ## COG: BS_ybbR COG4856 # Protein_GI_number: 16077244 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 8 134 1 128 483 62 32.0 2e-10 MELGCRPMNKFFDKPWFYKIIALLAATLLVIYIDTTQHGYFTQGEQTTSQQTATKKVTIS VPLQVSVNTDRYYVTGYPEKVKMTLSGASALVTSTQNTQNFRVYIDLTKLSVGKHTIKVK VTNLNKQLAYSINPKK >gi|313656766|gb|GL545251.1| GENE 726 717116 - 717958 945 280 aa, chain - ## HITS:1 COG:lin2225 KEGG:ns NR:ns ## COG: lin2225 COG1624 # Protein_GI_number: 16801290 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 271 2 269 273 284 52.0 2e-76 MSFNFTNFFTWQNLSILIDILVVWYILYLLLMLIKGTKAVQLAKGLVIIWVARQVAGWIG LNTFAYIVDQLLSWSVIGVIVIFQPEIRRGLEHLGRMPFFNGNAKTERQMSEKFVAELDK SIQYMSKRRIGALITIQRNTGLDDYIETGIGLDAEVTGALLINIFIPNTPLHDGAVIIRN GRIAVAAAYLPLSDNSMIPKKLGTRHRAAVGISEVTDAITIVVSEETGGVTITKNSQFML DMTRDEYMKYLTSELVPQDEVKQTLFQKVLGRLWNWGADR >gi|313656766|gb|GL545251.1| GENE 727 717995 - 719068 929 357 aa, chain - ## HITS:1 COG:lin0800 KEGG:ns NR:ns ## COG: lin0800 COG0687 # Protein_GI_number: 16799874 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Listeria innocua # 1 357 1 357 357 408 57.0 1e-113 MKKLIWGAVIILALCLGLSLAANKLDSSSATSSKKTLIIYNWGDYIDPSLITKFEKQTGY KVIYETFDSNEAMFTKVKQGGTSYDLAVPSDYMITKMKKANLLDKIDTNKLSNFKNLNPQ FLHQSFDKHNQYSIPYFWGTLGIIYNDKYVKSDEVQHWNDLWNPKWKNKILLVDSARDIM GFSLVSLGYSMNTTNSVELKLAKTKLDSLGTNVKAIISDEIKMYMIQNEAALAVTWSGEA SEMLDNNSHLHYVVPEEGSNLWFDNMVIPKTAKNKKAAYAFINFMLDAQNATQNAEYVGY ATPNKAAMKYLPKSIRDDKQFYPDKNTINHLQVYKDLPPKKVQEYNDLFLEFKMYSR >gi|313656766|gb|GL545251.1| GENE 728 719065 - 719565 444 166 aa, chain - ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 1 155 105 259 268 207 73.0 6e-54 MVSPDVIIGASFLVFFTALGLSLGFGSVLLSHIAFSIPIVVLMVLPRLKEMDKSLIDAAR DLGANNWQVYSKVLIPAITPGILSGLFMALTYSLDDFAVTFFVTGNGFTTLSVEIYSRAR QGIDLEINALSTLMFLIVLVLVGGYYLLTTRHSHKGNKPEIGGLIK >gi|313656766|gb|GL545251.1| GENE 729 719577 - 719873 341 98 aa, chain - ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 2 84 3 85 268 87 60.0 4e-18 MKKVWGRLYLALVLFILYLPIFYLIVFSFSNGKNMDVFHGFTLTHYKDLFADGRLLAIFL DTIMLALLSSLIATIIGTMGAIAIDGTKNKKKKRYYYH >gi|313656766|gb|GL545251.1| GENE 730 719870 - 720682 574 270 aa, chain - ## HITS:1 COG:SPy1103 KEGG:ns NR:ns ## COG: SPy1103 COG1176 # Protein_GI_number: 15675086 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Streptococcus pyogenes M1 GAS # 1 263 1 264 264 288 62.0 9e-78 MKNKHWFFLLPYSLWIGLFVVLPLLLIFWTSLTGNGSISLENFSNFFTNATFLRMTLNSF WYALLITLFTLLVSYPVAYILTKLKNQQFWLLLIILPTWINLLLKAYAFIGIFGKSGLVN NFLHLFGIGPVNILFTNFAFIFVATYIEIPFMILPIYNAIKEIDPALINAANDLGASKWQ SFRYIIWPLSLPGVESGVQAIFIPSLSLFMLTRLIGGNRVITLGTAIEEYFTTTMNWSMG STIGVILIVMMVAVMVLTGEKNKRKKEVKL >gi|313656766|gb|GL545251.1| GENE 731 720672 - 721772 1104 366 aa, chain - ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 3 359 5 361 364 453 64.0 1e-127 MNIIELKNVTKRYDDGFVALKDINLEIESGKFYSLLGPSGSGKTTILRIIAGFTEATSGQ ILFDGQDITNLDASKRHLNTVFQNYALFPHLDVYENVAFALKLKKRPESEIKQAVKEALH TVRLDGYANREISELSGGQQQRVAIARAIINKPKVLLLDESLSALDKRLRKEMQFELRAI QKKLGITFIFVTHDQEEALAMSDEIFVLNEGKIQQSGTPVDIYDEPVNDFVARFIGDSNI VPGRMVQDYEVEFVNKHFECADAGINPREKVEVVLRPEDLDIVEPDKGKLLVTVESQLFL GDHFEIKAHDADENEWLIHSTNPTEVGKEVGIFFDPEDIHVMRFGESEEEFDARLEKYEG EDDNEE >gi|313656766|gb|GL545251.1| GENE 732 721769 - 722680 1056 303 aa, chain - ## HITS:1 COG:SPy1101 KEGG:ns NR:ns ## COG: SPy1101 COG0812 # Protein_GI_number: 15675084 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 12 298 9 295 295 306 53.0 3e-83 MKIDSLIKQNYNISKQIPLSRYTFTKTGGEAEYLAFPKNLEQLQMLVAAANEDGLDITVI GNASNLIISDKGIAGLVIILTDMNEIKLDGDTVEAQAGATIVKTAFFAANHGLSGLEFAA GIPGSVGGAVFMNAGAYGGESEQAISEVTVLTRSGEIKHYSHDEMHFSYRHSLVQETGDI VVSARFKLEQGDKLKILDEMNYLNALRAYKQPLEYPSCGSVFKRPTGHFVGPMLIKAGLQ GKQIGGAQVSTKHAGFIVNKGGATATDYLNLIHYIQKTIKEQRGIDLHTEVRIIGRDIEG ESK >gi|313656766|gb|GL545251.1| GENE 733 722785 - 723318 558 177 aa, chain + ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 165 1 164 306 115 39.0 5e-26 MNFIAMDFETANRHPESACSLALVMVRNNKIADRFYTVINPQMPFDGRNISVHQITPSDV KDAPTMAEVWPKIKDLYQPGMLVAAHNAKFDANVLKMSLARYDIAEPHYLVIDTLKTSRL FEPDLPNHKLNTVSEALDVELWHHHNALSDSEACAGILIKQNEKMGDEAIKNLIEQR >gi|313656766|gb|GL545251.1| GENE 734 723363 - 725999 2201 878 aa, chain - ## HITS:1 COG:BS_pksP_1 KEGG:ns NR:ns ## COG: BS_pksP_1 COG1020 # Protein_GI_number: 16078784 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Bacillus subtilis # 61 388 59 411 531 174 34.0 7e-43 MPLVSALSLNEALKRVKEVEWNSLVTDFVVTDYDFTNINVEEFDPDKNISFNYQASSPKY AYILATSGSTGVPKKVFLTEENIKWLLSELYPLIHVNSETRFLFSTPYSFDVSLTEILSP ILTGAELVCLPTSPSKTESIRLIPKLINEEKITHLSLSPSFADALLTIGGPDVFKKLKFL MVAGEAFPIDLAKKLKASLKSGCRVFNLYGPTETTIYATYHEVTLNENNYVPIGKPFSGA IVKLVNQEGNKGELYIGGKGVTQGYVLDPVKRREKFISEAGINYYKTGDIVEQLDNGELV FLERMDDQVQVNGIRIELGEVKTIASEVMGVKSAVAKYQNGRIYIFYLADNDKTAEINHK LPRYLNPIIIRVPEFLYTYNRKIDAKKMIEKYYLKKQYLRNDTKDIEQELEKLLAKFNVS ALKDLDSLDLVRFIIEVESAFKIEIEDAELNQINNLSQLDQLVVKKLTGNNEVKGAFASE VDLDNLKLLFDNFSAEYGSEPIIASPTAQSLFSQGKTSFSILEFDLKEASYTEIRRIYQL LTELANKVDLLNYAWFINDKKLEFRPILNSSIPFLVATGEIKRSDLEKIMYQKPGRPIFI ALVDLSSSKLRLIFSHHSLDAASETLLKKRFSNLYQGDELASALPVSSFASYSKFLKKQN EQVDLAKAIEEIPETSENLNLSKDKKLLHVISFPAKVKDVDTAYIQGIYTLAKAVISERH LSQVTGKLALNIRKFKEFDAQNVLGDLHATLPWEVKATDSLADFKQRYFVTKQLYQTGID YRYCLFNKLGKDLEFLPVLEKKWKAMNLSPNYLGEVKSVQAVIDEIWQLPFKANYITMVS CHGKMYAILYGDLLKEKNIKICLDGKDFVVQTQILENK >gi|313656766|gb|GL545251.1| GENE 735 726232 - 726930 313 232 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854853|ref|ZP_04645183.1| ## NR: gi|238854853|ref|ZP_04645183.1| hypothetical protein LACJE0001_0820 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_3264 [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_0820 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_3264 [Lactobacillus jensenii 208-1] # 1 232 198 429 429 436 100.0 1e-121 MKGFAIFQTNFEFTNGFTNGFTNGFTNGILFSKFLRNHVVGHGLFIRLDYLQKIRGFTTD YWCEDIYLSFFLRSHDVKIYPIFAVEYGESPKNLKILMKQNATWFKTLFENGKIYSDLVK KHIDRTSAFSYLINQYRGAFAWLFLPTLYLAIIFYLFLLGNWQLGIIFLFSYIATTTIRY WLSNRIVELLSHNTMQSKLYLAFLASFAYLISNIGPLYSLLNPKRKKYKTER >gi|313656766|gb|GL545251.1| GENE 736 727503 - 728168 408 221 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854854|ref|ZP_04645184.1| ## NR: gi|238854854|ref|ZP_04645184.1| putative thymidylate kinase [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative thymidylate kinase [Lactobacillus jensenii 208-1] putative thymidylate kinase (dTMP kinase) [Lactobacillus jensenii 1153] putative thymidylate kinase [Lactobacillus jensenii 269-3] putative thymidylate kinase (dTMP kinase) [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] putative thymidylate kinase [Lactobacillus jensenii 208-1] # 1 221 1 221 221 387 100.0 1e-106 MSRGIIILIEGISNSGKTTLCNSLKNKANFEIIPEAIRYLENRLNDCGDNILFVPENSNQ EVLNQELLFDIEFEKLYDANFLAQKGENVVIDKSAFSILATANAFQSSIIQGTYEIAEKF FHEYEKKIARFDLAKPDLSILLKADLEISEERNKNRKHKLLNIWTSPITRFKQERVLESE FEKINNKMILDTSNMSKEEVYKQVIETIKLMIGRDISESLH >gi|313656766|gb|GL545251.1| GENE 737 728287 - 728625 356 112 aa, chain + ## HITS:1 COG:SP1116 KEGG:ns NR:ns ## COG: SP1116 COG0477 # Protein_GI_number: 15900983 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 14 94 6 87 392 59 40.0 1e-09 MTTKLSHTEKINTVKVTSSNVISKFGDILFDYVNSVFLSSVANGGLWLSLYQSSEVFISV IFNFLGGVLSDTGNRKKIIWHCDLISGLVCILLAIFIPHVFSFMQSLLLTSY >gi|313656766|gb|GL545251.1| GENE 738 728553 - 729500 374 315 aa, chain + ## HITS:1 COG:SPy0543 KEGG:ns NR:ns ## COG: SPy0543 COG0477 # Protein_GI_number: 15674642 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 12 307 97 395 402 188 40.0 1e-47 MYFTSNFHPSCFFIYAIIIINIILAIISSYRSPAYKAVFREIVQKEHLNQVNSVLEIAKQ VIQITGPTGALIIAHFFGNRFALIFDGISFIISGLLIRKLTILSAPVKKKSSKKTFSQIR EGLNYIFHNREILIIITFSSIVNFVIAGYNLILPFSTYAFSDSHLKAYAVLLTAESIGGL LGATASTLIKKTPTTNKLLFLIFLDGLALMPSERIYHLSHSIILVAICISLFNFFLSIFN IQFMTFVQVRTDMNYIGRVFGTIFSVAILFMPIGTFFFKFAFNLQNPNNYFVLGSLLTFI SIITIILNTIFKSKN >gi|313656766|gb|GL545251.1| GENE 739 729546 - 730022 673 158 aa, chain - ## HITS:1 COG:BS_ydiB KEGG:ns NR:ns ## COG: BS_ydiB COG0802 # Protein_GI_number: 16077658 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Bacillus subtilis # 1 127 4 129 158 118 44.0 5e-27 MKLEINSAQEMQKLGASLGKVAKPGSLLLLNGDLGAGKTTMTQGLARSLGIRRPAKSPTF TIVREYREGRLPLFHMDMYRLENDDLASIDLNGYLNEQGIVVIEWPEIIMNDLPDDYLQL TLKRVDDSWDSTKRVVEVNAQGKQAKDWLEDTLAKFEE >gi|313656766|gb|GL545251.1| GENE 740 730022 - 730999 1236 325 aa, chain - ## HITS:1 COG:BS_pta KEGG:ns NR:ns ## COG: BS_pta COG0280 # Protein_GI_number: 16080818 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Bacillus subtilis # 3 322 4 323 323 350 56.0 2e-96 MSIFDELKAKIVGHKKVIVLPEGEDERVLSAAVKLNSEGIIKPLVLGDEAQIKETAKDHK LDLTGIEIINPKTDTRKGEFAKQYFELRKGKESEEQASSQVLDPNYFANMLVYNGLADGC VSGAAHSTADTVRPALKIIKTKAGMKRVSGQFIMEKGDQRYIFSDCAMNIDPDADTLVEI AYQAAQTAKMVGLEPKLAFLSFSTMGSAKGEMVSKVQAAAASFKEKYPEISADGEMQFDA AFVPSVGAKKAPDSNVAGHANVFIFPELQSGNIGYKIAQRLGDFTAIGPVLAGLAKPVND LSRGCSSQDVYEAAILTAAQSLDEE >gi|313656766|gb|GL545251.1| GENE 741 731012 - 731701 538 229 aa, chain - ## HITS:1 COG:BS_ung KEGG:ns NR:ns ## COG: BS_ung COG0692 # Protein_GI_number: 16080848 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus subtilis # 1 219 1 220 225 261 60.0 7e-70 MKELIGNDWDQVLEPVFSSASYQKLHNFLKEEYASKQIYPDMYHIFTAFKLTSFKDTKVV ILGQDPYHNPGQATGMSFSVNPGIALPPSLKNIYQELYDDVGCLPVKHGYLKKWADQGVL LLNAVLTVPYGHANGHQGKGWEEVTDQAIKALSERGEVVFILWGKFAQNKIPLIDESKNV IIKSAHPSPFSARYGFFGSRPFSRCNAALAKWGKRAIDWQLPVEVKVEK >gi|313656766|gb|GL545251.1| GENE 742 731794 - 732075 272 93 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00710 NR:ns ## KEGG: LCRIS_00710 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 87 1 87 171 89 45.0 5e-17 MKLILLFNQQKNYGQIPVVDQTEKIQFFIQGKLHNSNHTLFLTDLNHKEIGRLYQDGRNL LTSYTIDIIDYELAQVKQVTNVELPMFLTKKII >gi|313656766|gb|GL545251.1| GENE 743 732129 - 732308 161 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854859|ref|ZP_04645189.1| ## NR: gi|238854859|ref|ZP_04645189.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 59 113 171 171 122 100.0 8e-27 MASCESMVIDSGLALVCDIKSYQDIPYILLITGLFSQWSATPLELPQFKFNNQLSTNCN >gi|313656766|gb|GL545251.1| GENE 744 732312 - 732767 479 151 aa, chain - ## HITS:1 COG:SPy0504 KEGG:ns NR:ns ## COG: SPy0504 COG0691 # Protein_GI_number: 15674609 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 1 150 1 150 155 169 62.0 1e-42 MKKEANNVLAQNKKASHDYFIKETIEAGIALTGTEIKSVRARRIQLRDGYVQIYNGNAYL ENVHISEYKQGNIYNHDPLRRRQLLLHKKEIRKLAEVQAQQGMAIIPLKVYLKKGFAKIL LGIGQGKKQYDKRETIKKRDQERELRRKYRM >gi|313656766|gb|GL545251.1| GENE 745 732777 - 734438 1221 553 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 1 502 203 703 730 474 47 1e-146 DPGVDIMSIVAAHDIRMEWPEDAMKQANEIPDHIEEAELTNRVDIRDQPAVTIDGDDSKD FDDAVVLWKLPNGNYHLGVHIADVAHYVKENSPLDKEAYQRGNSTYLVDRVIPMLPFRLS NGICSINEGVDRLVLSCDMEITPEGKRVAYDIHPSVMRSHGRLTYNKVNEALTKPASELD EKYAKLQPMLKEMANLHEVLYNQRHNRGAIDFEEPEAKIIVDDKGKPVDIVLHNRGTAEK MIESFMLLANETVAEAFFKKHVPFLYRVHETPDAERIQSFFEFVSALGLNIKADPNDVKP IDLQKVVTKTLGTPEEAVVQMVMLRSLKQAHYSDEPLGHFGIAAEFYTHFTSPIRRYSDL MVHRMIHEYTDSNLSEDTQKHFGPILPDVAEQTSTQERKSIDTEREVNDLKMTEFMADHV GEHFDAVISSVTSFGMFIQLPNTVEGLIHISNLTDDFYNFDEKTLTLTGRGTHRQFKIGM PLKVTLINANVEQHQLDFEIYDPNAPKKEHNDRGMGRPRRRDNRFGRAGRNRDNNRGRRS RNSRDNKGRRRYK >gi|313656766|gb|GL545251.1| GENE 746 734366 - 735097 167 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 11 219 7 201 730 68 25 1e-146 MAQDERVLATILEIFRHNPQRKFRVNQLERMASRDHVKFAELVKALTFLEQEKQIVTDGN GEYQLASVDTEVTGVFRANEKGFGFVRIDDEENADDIFVGPDNTLLALDSDHVRVKIIAN GNPWNGKGPEGKVVEILERGVETLVGEFHPLTDIQVKLSGFCGYVISSNKKFKNYKIYTP VDGITPQMGDMVKVSISQYPTEDMPENMQGAILETIGNKMTLVLISCQSWRPMILEWNGQ KML >gi|313656766|gb|GL545251.1| GENE 747 735158 - 735376 329 72 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00448 NR:ns ## KEGG: LCRIS_00448 # Name: secG # Def: preprotein translocase # Organism: L.crispatus # Pathway: Protein export [PATH:lcr03060]; Bacterial secretion system [PATH:lcr03070] # 1 72 6 77 77 86 90.0 4e-16 MTLLIIVSVLIVIATMMQPQKQQDALNALSGGAVFSGQTKKRGFEAFMEKVTSVLLVLFF LLAFVLAYLSTK >gi|313656766|gb|GL545251.1| GENE 748 735535 - 736833 1977 432 aa, chain - ## HITS:1 COG:BS_eno KEGG:ns NR:ns ## COG: BS_eno COG0148 # Protein_GI_number: 16080443 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Bacillus subtilis # 1 430 1 430 430 582 68.0 1e-166 MSVITDIHAREVLDSRGNPTVEVEVYTELGGFGRAIVPSGASTGEHEAVELRDGDKSRFN GTGVLTAVKNVNTEIAKAVIGLDVTDQRLIDQTMIDLDGTPNKGRLGANAILGVSLGAAR AAADELGMPLYEYLGGPNAHVLPTPMMNVINGGKHADNNVDIQEFMIMPVGAKSMHEAVR MGAETFHALKALLKERGDSTAVGDEGGFAPNLANNEEPFEVLVEAIQRAGYKPGDDIAIA MDCAASEFYNKETHKYVTVADGREYTAEEWTSLLESLVEKYPIISIEDPLDENEWDDWKG FTDRLSKKVQIVGDDLFVTNTSYLKKGIQMGVANAILIKVNQIGTLTETFEAIEMAKEAG YTAIVSHRSGETEDTTIADLVVATNAGQIKTGSMSRTDRIAKYNQLMRIEEELDSAAEFK GIHSFYNLHKQF >gi|313656766|gb|GL545251.1| GENE 749 736893 - 737648 800 251 aa, chain - ## HITS:1 COG:SP1574 KEGG:ns NR:ns ## COG: SP1574 COG0149 # Protein_GI_number: 15901416 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 2 249 3 250 252 332 65.0 4e-91 MRTPIIAGNWKLHMNPAQTAEFVKNVKDKLPDSNKVESVIAAPAVDLDALIKASEGSNLS VAAENCYFEDEGAFTGETSPKVLKEMGVKYCIIGHSERRDYFHETDEDINKKAKAIFRNG LLPIICCGESLETREAGKEEEFVVAQIKKALDGLTSEQVSSLVIAYEPIWAIGTGKTATS DQAEEMCKTIRESIAKLYNEETAENVRIQYGGSVKPANVKELMAKPNIDGGLVGGASLEV ESFLSLVNYQD >gi|313656766|gb|GL545251.1| GENE 750 737663 - 738874 1656 403 aa, chain - ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 403 1 396 396 508 67.0 1e-144 MAKLIISDLDVKGKKVLVRVDFNVPIKDGVIGDDNRIVAALPTIKYIIDNGGKAILLSHL GRIKSDADKKELSLAPVAKRLGELLEKDVEFVPSNEGKEVEDAIAKMNDGDVLVMENTRF QDIDNDFGKRESKNDPKLGEYWASLGDLYVNDAFGTAHRSHASNVGIATAMKAEGKKVAA GFLMEKEIKFLGNAIANPVHPFVTILGGAKVSDKISVITNLIPKSDHILIGGGMAYTFLA AQGHKIGKSLFEADKVELAKELLEKANGKIVLPVDNVAATEFSNDASREVVGDDIPDNEM GLDIGPKTVELFRKTLQGAKTVVWNGPMGCFEMPNFAEGTLEVGRAMADLPDATTIIGGG DSTAAAKQLGIAPKITHISTGGGASLEYLEGKELPGIECISDK >gi|313656766|gb|GL545251.1| GENE 751 738979 - 739995 1196 338 aa, chain - ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 338 3 333 333 424 66.0 1e-118 MTVKIGINGFGRIGRLAFRRIMDLGEKSSDIEVVAINDLTTPALLAHLLKYDSTHGTFNH EVSATEDSIVVDGKKYRVYAEPQAQNLPWVKNDGVDFVLECTGFYTSKAKSQAHLDAGAK RVLISAPAGNDLKTIVYSVNDDTLTADDKIVSAGSCTTNSLAPMASALNKEFGIEVGTMT TIHAFTSTQMVLDGPVRGGNFRAARTSSANIIPHSTGAAKAIGLVIPELNGKLQGHAQRV PVVDGSETELVSVLSKKVTADEVNAAMKKYESASFAYNDDQIVSSDILGMTAGSIFDPTQ TEVTTAGDKQLVKTVAWYDNEYSFTCQMVRTLLKFATL >gi|313656766|gb|GL545251.1| GENE 752 740041 - 741084 659 347 aa, chain - ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 9 342 9 342 348 288 45.0 1e-77 MDTDFTLLQNLVPDVLKIFRQRYQVLEQISLRYPVGRRAVAQQLGMSERTVRTETEYLKK LGLIEIKPFGMYLTEKGEETLKDATSLINRLFNASQAEIKLAKKLKIARAIIVPGDADLQ ERVSILMGEKLNSALDLLLPLGSSIITVLGGATLAKASKVLSSSLSKNRELEFVPGRGAL GESVETQSSTIVQEMAKATGGKYKTLYLPENVSKDAYRSLIRDPAISDVLQDISQCDVAI HGIGLAEDMAKRRGYDSVALSRIRATGAVSECFGCFFDENGKMIERIPRIGLQFEDLSKI PHIFAFAGGHSKAKAISSYMHNAPSQTWLITDEGASDLILKGQQGSL >gi|313656766|gb|GL545251.1| GENE 753 741483 - 742658 1283 391 aa, chain - ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 388 147 534 545 384 51.0 1e-106 MFVFSLINFGSVKLLTRFTSLIAVFKLLIPSLTIIFLILAGFHPSNFGSSAATFMPYGTK GIFQAVTVSGIILSYDAFQTVINLAGEIEKPHKNIFRGVWISLSVTAIIYVLLEVAFIGA VEPSMLAKAGWHGVDFASPFADIAILLGLTWLSVLLYMDAFISPFGTGVTFVATSARTLM AMTKSGNVPAFLGRVNKKYKTPRYAMVWDLVLAMALVFFFRNWSELATVVSVSTFVAYAT GPVAAISLRKLRPNFNRPFKSVHLKWVAPVSFVLTGLVIYWAMWPTTIEVIFVVLLGLPI YFYYQFKKKTKNFVQQFKSSIWLLTYLAFISVISYMGSNAFGGNNTFKYPWDFVIVIIAS ILFYIWGVKSSYDGEDLKDAEKVNKDVKVDD >gi|313656766|gb|GL545251.1| GENE 754 742640 - 742870 160 76 aa, chain - ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 66 76 139 545 81 62.0 5e-16 MSRFAEYSHGQLLGFLSAWANWVSLITLIPIEAVACVQYMSSWPWSWANWTRGFSIMEPL LMKAYGQFIYLCLFSA >gi|313656766|gb|GL545251.1| GENE 755 742867 - 743076 322 69 aa, chain - ## HITS:1 COG:BS_ybeC KEGG:ns NR:ns ## COG: BS_ybeC COG0531 # Protein_GI_number: 16077281 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 5 68 7 70 539 74 57.0 5e-14 MKKNQISLFSGVMLALSSLIGSGWLFGAGSAAQVAGPSSIISWIIGAAIMMLIAFNYVEL GTMFPESGE >gi|313656766|gb|GL545251.1| GENE 756 743240 - 743707 463 155 aa, chain + ## HITS:1 COG:SA1678 KEGG:ns NR:ns ## COG: SA1678 COG0735 # Protein_GI_number: 15927435 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Staphylococcus aureus N315 # 1 151 1 146 148 103 37.0 1e-22 MEVEKLSEEKIADKAAKIIRAHGLKRTPQRLKILIYLMTHHNHPTAEMIFNDISLSDEKT GIATVYNTLNTFVDLGFVIEINNGSDGSTHYDFFAKPHFHVICTNCGKIADVEYTNFDKI ESKMRQETEKQTGYITRSSHIKIYGLCPDCQKLKK >gi|313656766|gb|GL545251.1| GENE 757 743802 - 744383 770 193 aa, chain + ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 2 191 3 192 198 263 70.0 1e-70 MLVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDIS LYINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVL IHQPLGGAQGQQTDIQIAAEEILKSRKKLNEILHETTGQPIEKILKDTERDNYLTAQEAK DYGLIDEIMTNMK >gi|313656766|gb|GL545251.1| GENE 758 744445 - 745437 1098 330 aa, chain - ## HITS:1 COG:SA2312 KEGG:ns NR:ns ## COG: SA2312 COG1052 # Protein_GI_number: 15928103 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 2 320 24 342 351 199 36.0 9e-51 MKIAVFSPSESERKLVAATEKKFGCELKLIDESLSAENVDQVADCDGVLLKPLGNLDDEI VYKKLADYGIKSIGLRIVGTNTIDFDLAKKYHLTVTNVPVYSPRAIAEMAVTQAMYLNRK IGEFKANMDKGDFTNPDSLISNEIYNKTIGLIGVGHIGSAVAQIFSAMGAKVLAYDVIYN PEVEPYLTYADFDTVLKEADIISLHTPLLKSTENMIGKKQFAEMKNDAILINAARGELVD TAALIEALEKHEIAAAGLDTLAHESSYFFKKVDDAQIPADYKKLAAMPNVIVTPHSAYFT KTSVRNMIEISLRDTIALANGERAHFVVSR >gi|313656766|gb|GL545251.1| GENE 759 745563 - 746762 672 399 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313472374|ref|ZP_07812866.1| ## NR: gi|313472374|ref|ZP_07812866.1| putative glucose/galactose transporter family protein [Lactobacillus jensenii 1153] putative glucose/galactose transporter family protein [Lactobacillus jensenii 1153] # 1 399 1 399 399 494 100.0 1e-138 MKACSKTILIVGGYTMKTVTIRNSLIFIIYGLLLDYAIQQVMVLPFYFIALVSIGCIVYL LLKNSSRILTFTIWNVLSLMLLIHIIHSNLKYELGEIVFLLLLIIINRQKQNLFTFHFQL ITLVIMSLSIIFLNSKLNIFNASIVAGLFIIGFGVVLFLPKEKSMVFLLLGAILSLVTRF LIGMTQGVTTAVLYFLVIALWLHLDQLLLYSLAWLKQKHVTFDANVIQWSSFVLTFLIGL LGLFATNLNYVSGVSGIWILYSVFMARAKDKFIYFDFSLVITLLLILKINSTIFAIAILV LELLKLVLKTYSQPLPKMYFSLLSCAFIGILALQGTVIVNYRLFIFVLLTFIATILLRLE KGISKLGLVFIQLVLMFVLPLTDSKAVLAFSLQLEFTYW >gi|313656766|gb|GL545251.1| GENE 760 746857 - 747702 919 281 aa, chain - ## HITS:1 COG:BS_yvcL KEGG:ns NR:ns ## COG: BS_yvcL COG1481 # Protein_GI_number: 16080528 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 281 31 310 316 296 55.0 3e-80 MNGILNLHDHQLSLDITTENPAIARRIFTLIKVAYDIEPLLIVSRKMKLKKNNQYLVRLN KQVNEILADLEIVDPEKGFVIGVPKKVLEEEQRAMSYLRGAFLASGSVNNPETSRYHLEI YSVYEAHNDDISYLMNHYFNLNSKKTKRRSGYITYLKEAEKIGDFLHIVGAFNAMLAFED LRIMRDMRNSVNRLVNCDTANLKKTANAAARQVEDIQVIDEKLGLEQLPEKLETLARFRL ENSDLTLKEVAEQIPDGPISKSGVNHRFQKIREIADKLREG >gi|313656766|gb|GL545251.1| GENE 761 747787 - 748824 978 345 aa, chain - ## HITS:1 COG:L189428 KEGG:ns NR:ns ## COG: L189428 COG0391 # Protein_GI_number: 15672944 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 17 333 4 320 327 343 52.0 3e-94 MAYAESRIIRVIKGRRPKVVVIGGGTGLPVILNALKEKNAEITAIVTVADDGGSSGAIRN YINVVPPGDIRNVLAALSDLPQESKDIFQYRFDSSDSFFAGHAIGNLIIAALNEMHGNIF DAVQSLSKMMKVDGHVFPASNEPLTLNAEFVDGSREAGETEITSKDKRIKRIWVTDTNDD KEPEAVLPVLASIMQADAVVLGPGSLFTSILPNLMISNLGEAVRQTKAEVIYICNIMTQK GETDHFSDADHVRIINKHLGGNYIDTALVNGAKIDMSKFNPADYDEYLEPVSSDFAGLRE QNCRVITDDFIDQRHGLVFHDGEKVAKEIIDLAFEAHCRRGENNG >gi|313656766|gb|GL545251.1| GENE 762 748834 - 749709 908 291 aa, chain - ## HITS:1 COG:SP1566 KEGG:ns NR:ns ## COG: SP1566 COG1660 # Protein_GI_number: 15901409 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 287 1 288 296 314 53.0 1e-85 MASETRQLLIVTGMSGSGKTVAAHSLEDLGYFVVDNLPPTLLGSFWDLMNTSDDFNKVAV LIDLRVKSFYKDLENEINSLEDNGNTQATILFLDASDDVLVARYKETRRLPPLARSGRLL DGIQKERAILSPIKNISNIIIDTSSLTPKDLKTKLTKLFSEHGRKPFTVEVMSFGFKYGM PIDADIVMDVRFLPNPFYIPNLKPFTGLDKRVFDYVMDKDVTKVFYKKLLDLIETTIPGY IKEGKEKLTIAIGCTGGQHRSVSIAQQLARDLSKKYPVDISHREISRYIRK >gi|313656766|gb|GL545251.1| GENE 763 749796 - 752645 2613 949 aa, chain - ## HITS:1 COG:SP0186 KEGG:ns NR:ns ## COG: SP0186 COG0178 # Protein_GI_number: 15900123 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pneumoniae TIGR4 # 2 931 1 937 943 1303 70.0 0 MVRDKIEIHGAREHNLKDIDLTIPKDKLVVVTGLSGSGKSSLAFDTLYAEGRRRYVESLS SYARQFLGQMDKADVDSIDGLNPAISIDQKTTSHNPRSTVGTVTEINDYLRLLWARVGHP ICPNDGTLIERQSVDQMVKRVLELPERSKIQILAPVIRQKRGMYQEVFKKVARAGFVRLI VDGEMHEVSDEFNLDKNKKHSISIVVDRLIVKDGIKSRLTDSVESALRLSEGYMDVDVIG NQVLNFSEDYACPKCGFTVGEMEPRLFSFNAPFGACEACDGLGMKLAVDEDLVVPDKDKT LNEGAIAPWANSDYYKMMLTQACQSLRINMDKPFKKLTERQKNLVLYGSDKKIKFHLEGD FGVNDTTQAFEGVMNNIDRRYHHPMSQFMREVMGKYMTELTCAVCHGKRLNQKALAVKVM GQDISEVSDLPIGKELTFFKSVKLTEAENMIAKPILKEVIDRLTFLVNVGLDYLTLSRSA GTLSGGEAQRIRLATQIGSNLSGVMYILDEPSIGLHQRDNDRLIASLKKMRDLGNSLIVV EHDDETMKQADYLIDMGPGAGSFGGKVMAAGTPEEVMANPNSLTGQYLSGKKFIPVPTER RKGNGKKITVSGACEHNLKDITVDFPLGKFVVVTGVSGSGKSTLVNTILKRALAQKLNHN SAKPGKFAKITGYKEIEKIIDIDQSPIGRTPRSNPATYTSVFDDIRALFAQTNEAKIRGY TKARFSFNVKGGRCEACHGDGIIKIEMNFLPDVYVPCEVCHGRRYNSETLEVTYHDKNIA QVLDMTISEACEFFEKIPKIHRKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLASELQK LSTGNNFYILDEPTTGLHVDDIKRLLVVLQRLVDQGNTVLVIEHNLDVIKTADWLIDLGP EGGEGGGQVVVTGTPEHVVECDKSWTGKYLKLVLKRDTERTLQAKNKLS >gi|313656766|gb|GL545251.1| GENE 764 752632 - 752784 147 50 aa, chain - ## HITS:1 COG:no KEGG:LA2_03540 NR:ns ## KEGG: LA2_03540 # Name: not_defined # Def: excinuclease ABC subunit B # Organism: L.amylovorus # Pathway: Nucleotide excision repair [PATH:lam03420] # 1 49 634 682 682 73 79.0 2e-12 MIKNLTEQMQEAAKKLDFEAAANLRDAIMELQNSVHTPKKHKGKDFNGKR >gi|313656766|gb|GL545251.1| GENE 765 752805 - 753614 878 269 aa, chain - ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 261 355 615 662 377 73.0 1e-105 MYNGDRKRKETLIDYGFRLPSALDNRPLKLEEFEKHVNQILYVSATPGDYELNRTGKIVE QIIRPTGLLDPKIEVRPIQGQIDDLVGEINKRIDRDERVFVTTLTKKMAEDLTDYLKDLG IKVRYLHSDIKTLERMQILHDLRKGDFDVLIGINLLREGIDVPEVSLVAILDADKEGFLR STRPLIQTMGRAARNSDGTVIMYADKITDSMRIAIDETRRRREKQIAFNKEHGIVPKTIV KPIRDVISITKPVKEEKRKKVLLSLTLMS >gi|313656766|gb|GL545251.1| GENE 766 753659 - 754675 938 338 aa, chain - ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 312 1 312 662 447 70.0 1e-125 MIKRQTNRKFDLVSKYKPAGDQGQAIDKLTAGFKAGAKEQILQGATGTGKTFTMANIIAK LNKPTLVISHNKTLVGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI NDEIDQLRHRATSALMERNDVVVVASVSCIYGLGDPREYAASVLSLHEGQEYDRNVLLRD LINIQYDRNDIDFQRGRFRVRGDIVEIFPAGNSNHAYRVEFFGDEIDRIVEVDSLTGEVI GERDQVSLFPATHFMTNEEQMKQALKRISQEMDLQVKKFEGEGKLLEAQRIKQRTTYDME MMSEVGYTNGIETILPQLKVERQESHLILYLISSQTIF >gi|313656766|gb|GL545251.1| GENE 767 754773 - 756497 2192 574 aa, chain - ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 572 1 570 572 518 45.0 1e-146 MTARQAYENWLKADKLPDYLQRQLKELGQDPAWVDDAFGTDINFGTAGMRGLLEPGTNRI NVVTVGRVTEGLAQLIEKEGQEAKEKGVVISFDSRYHSEDFAKLSAQILGHHGIKVYLFD GLRPTPELSFAIRHLGTFAGIMVTASHNAKQYNGYKIYGADGGQMPPEHAAVVEKAALEV ENQLAIPVSPIEELRAKKILQLVGEDVDEAYLEALDTINVNHDLIKETADKLKIVYTPVH GTGKVIYDRAFRQGGFKNFTVVPSQAIIDPEFPTTIKPNPEYRQVFDEGVKVADKVGADI IVATDPDADRLGAAVRTPNGDFQVLTGNQIATLISNYLLTNLKNSGKLDSSYEIITSVVS SALPFKIAKSFGIQTKYVLTGFKYIGEEIDRLHKTGDGQFLMGFEESYGFLFKTFNRDKD AMQGALMFFEVAAYYASRNMSVFDGLQEIWNKYGASCEITKAIEMPGLDGQKRMAKVMEN LRKEQLQEINGHKVIKIEDFELAKEITPAGEKDMLGFPKSNVLKYFLDDETWVALRPSGT EPVIKAYVGTNAETYAKAEEKCKAYHEAIAKFTK >gi|313656766|gb|GL545251.1| GENE 768 756633 - 757559 568 308 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 5 306 2 306 306 223 39 2e-56 MTKQYDIIIIGAGPGGLTAALYAARANLSVLILDRGIYGGQMNNTGAIDNYPGFMEIQGP ELSEKMYQSAMKFGPEFKYGDVTSVDFSNKIKLVKTSDAEYEAKAVIIATGAEHKHLGVP GEEEYSGRGVSYCAVCDAAFFKDEDVVVVGGGDSAIEEGLYLANIAKSVTVIHRRDSLRA QPVLQKRAFANKKMNFIWNAQTEEISGDDQKVTTVKYLDKKTGEHKEVSASGIFIYVGVE PQTNLFKDLAITDEHGWIITNEKMQTAIDGVFALGDVRAKDLRQIANAVGDGSIAGQEAY NYLQSLND >gi|313656766|gb|GL545251.1| GENE 769 757628 - 758650 1130 340 aa, chain - ## HITS:1 COG:SPy0226 KEGG:ns NR:ns ## COG: SPy0226 COG0240 # Protein_GI_number: 15674414 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 2 340 4 337 338 345 54.0 6e-95 MRKIAVLGSGSWGSVLASMLADNDENNQVLLYGNRQTVCDEINEKHTNIHYMKDWALNKR VLATTDLKEAVKDSELVLFVVPTKAIREVAQNVKKVMTETQTQPLIVAATKGIEPGSKKL ISQILTEEIYPDHEEKIVAISGPSHAENVAQKDITAITCASTNYENAEKVQEIFSNDYMR FYTSNDLIGVEIGGAVKNVIAIAAGMLVGKKYGDNAKAALMTRGLAEIMRLGVSFGAQPW TFSGLSGIGDLIVTCTSVNSRNWRAGKALGEGQKLEDVLENMGQVVEGAVTAKAVHEICQ KDGIDMPISEAIYKVLYEGADIDEEIRAMMCREKTSEVRW >gi|313656766|gb|GL545251.1| GENE 770 758653 - 759417 701 254 aa, chain - ## HITS:1 COG:lin2625 KEGG:ns NR:ns ## COG: lin2625 COG0682 # Protein_GI_number: 16801687 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Listeria innocua # 1 244 27 267 277 233 50.0 3e-61 MATGVLIATTMAIIEGKKRQIMSDDFIDLLLWAVPIGFIGARTYYVVFEWGYFSQHPDQI IAIWNGGIAIYGGLLAGLAVLLIFCRNRMLPPLLMLDIITPGVLAAQILGRWGNFMNQEA HGAQTSLAFLQSLHLPEFIIKQMNIGGHYYQPTFLYESFFNLIGLILILALRHKKNFFKR GEVFASYIIWYSMVRFFVEGMRTDSLYIFNVIRVSQALSLVLFVAAIIFVIYRRKQGNVA WYLDGSGLKFPYER >gi|313656766|gb|GL545251.1| GENE 771 759502 - 760446 953 314 aa, chain - ## HITS:1 COG:lin2626 KEGG:ns NR:ns ## COG: lin2626 COG1493 # Protein_GI_number: 16801688 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Listeria innocua # 29 314 27 312 312 311 51.0 9e-85 MADKVELTELFEDNNVLHVFQGKELIKNRAVTVSDIYRPGLELTGYFDFYPSKRIQLLGR TEISYAAMLDHETRLHVFNKMATLDTPCFLISRSLPVPKELTEAAARNGIPILTTSESTT YIMSVLTQYLREHLAQRTSIHGVLVEINGMGVLITGASGVGKSETALALIQRGHRLIADD RVDVYQRDHDTVVGEAPKILNHLMEIRGIGIIDIKDMFGVGAVKDHTEIKLVIKLENWDP KANYDRLGFDQDTREICNIEVPQVTIPVKVGRNLEIIIEIAALNFRAKQMGFDASVTFQQ QLAKLIAENEKNNN >gi|313656766|gb|GL545251.1| GENE 772 760458 - 760763 442 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854883|ref|ZP_04645213.1| ## NR: gi|238854883|ref|ZP_04645213.1| hypothetical protein LACJE0001_0851 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_0851 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 101 1 101 101 166 100.0 4e-40 MGFIEFLVVVLILAIIVCVLFALLKLFILILPFILIIAGLIWLYIYFLKRKIRHEISKEM DEDYKMSWDDFVSYGKNTTKETEGHHRKPARDVTTEDVNDK >gi|313656766|gb|GL545251.1| GENE 773 760776 - 761774 1031 332 aa, chain - ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 1 326 1 326 327 384 58.0 1e-106 MADPDFWNNQESAQKLISATNKLKEKRDHFNDLAQAFSDEEAALELLKEESDTDLQAEVE SDLESLKDSFHQYELNLLLSGKYDTNNALMEIHPGAGGTEAMDWAQMLMRMYQRFSEAHG FTFEIDDYEPGDEAGVKSVSVLIKGTNAYGLLKGEMGVHRLVRISPFDAAKRRHTSFASV EVIPEIDDSIEVDINPADLRIDVFRSSGAGGQHINKTSSAVRITHLPTGIVTTSQAQRSQ FQNKETAMNALRAKLFQLEEEKKRKEKEKLKGVQQDIAWGSQIRSYVFHPYSMVKDHRTN FETSDVNGVMDGKLDNLIYSFLQWRLSQENPE >gi|313656766|gb|GL545251.1| GENE 774 761950 - 764256 2511 768 aa, chain - ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 764 33 783 839 978 67.0 0 MSKLSDAQLQAKTPEFKKRLEDGESLDDLLPEAFAVCREGAKRVLGLYPYLVQIIGGISL HFGNISEMMTGEGKTLTATMPVYLNALTGKGVHVVTVNEYLSGRDEEEMGQLYRWLGLTV GLNLNEKSPDEKRAAYNCDVTYSTNAELGFDYLRDNMVVYKEQMVQRPLNYAIIDEVDSI LIDEARTPLIISGEAQQATGEYIRADRFVKTLTEDKSDDDVDDDKDYGDYKIDWPTKTIS LTRQGIAKACEHFGLKNLYDVENQVLVHHIDQALRANYIMLKDIDYVVQDGEVLIVDSFT GRVMQGRRYSDGLHQAIEAKEGVKIQEESKTQATITYQNFFRMYKKLSGMTGTAKTEEEE FREIYNMQVITIPTNRPIQRKDMPDILYPTLDAKFKAVVEEIKKRHAKGQPVLVGTVAIE NSERLSKMLDAENIPHAVLNAKNHAKEAEIIMKAGQRGAVTIATNMAGRGTDIKLGPGVR ELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGYSRFYLSLEDDLMKRFGGDRVKVFLDR ISDNDDDKVIESRMITRQVESAQKRVEGNNYDTRKQTLQYDDVMRTQREIIYGERMQVIE EDKSLKNVLMPMIKRTISHQVDLYTQGDKKDWRIDSLRDFIVSSLTNEEVADKIDLKNIK SADELKEKLYNLAEENYKDKEETLSDPSQMLEFEKVVILRVVDDRWTDHIDAMDQLRQSI GLRGYGQLNPLVEYQDAGYRMFEEMVANIEFDATRLFMKAQIRQNIAR >gi|313656766|gb|GL545251.1| GENE 775 764488 - 765033 791 181 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 1 181 1 185 185 309 85 3e-82 MLKYNVRGENIEVTEALRSYVEKRLEKLEKYFELTSDVIAHVNLKVYKNHDAKVEVTIPL PYLVLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGREKGVKDFFIETPAEEEKPT SEFDIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAETNGTSVVYRRNDGRYGLIETN E >gi|313656766|gb|GL545251.1| GENE 776 765113 - 765760 177 215 aa, chain - ## HITS:1 COG:L0319 KEGG:ns NR:ns ## COG: L0319 COG1040 # Protein_GI_number: 15673071 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Lactococcus lactis # 6 215 17 216 216 104 34.0 2e-22 MPALNFNELLNPLSESLDILCSDCQNSFSYLEKGCQYCQKAGAQKICKDCQAWQKKYQVL LKNHAIYAYNVQFHNAMRLYKRYGDYQVGKALGALIQSKMPQGFDYYIPIPTSESHIKKR GFDTIYELFKGLVPLCPILKKRDLNISQGELNRQQRLATPQSFYLEKAVGQQIRISGKVL LLDDIYTTGRTLYHARDAIWQVFPDIHIESFTISR >gi|313656766|gb|GL545251.1| GENE 777 765787 - 767067 798 426 aa, chain - ## HITS:1 COG:SP2208 KEGG:ns NR:ns ## COG: SP2208 COG4098 # Protein_GI_number: 15902015 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Streptococcus pneumoniae TIGR4 # 36 426 40 428 432 290 43.0 5e-78 MENLTSLAGRQWIISQDDSSIFSNCEKIAGIIDGICQRCGSYCDTKIAEEILYCRECIGL GRVSEKDYLIRDLSNKKFPKQGDLLTWSGELTTRQAKVSQEICDAFNKRQDYLVHAVTGA GKTEMLFACLKLCLEAGLRACIATPRIDVVNELFPRISSAFSNLKIGKYHGREYKDYEEE QLIICTTHQLLKFYHAFDLLIIDEVDSFPYAPSPMLHFGADNAVKTDGMKLYLTATPPDD LIEQIKHKEITVSLLNRRFHGGLLPVPKEKLFLKPFLKKMQLNKNLLKEIISVIKAGHPL LLFVPKISEIPVYLEALQSCHELKGVVIKGVHAADEARIDKVQEFRDSKIDILITTTILE RGVTFKHVWVIIVAADDRIYTRASLIQIAGRVGRSSDDQNGLVLFCYHKYTFPIRQAVAE IKRMNR >gi|313656766|gb|GL545251.1| GENE 778 767113 - 767775 703 220 aa, chain + ## HITS:1 COG:lin2660 KEGG:ns NR:ns ## COG: lin2660 COG1739 # Protein_GI_number: 16801721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 209 3 207 211 172 44.0 5e-43 MSEKENFLTIKEAGQNELIIKKSRFIASFARTDTKEKAEAFIKEVSKKYHDATHNTYAYT IGLNDEQVKASDNGEPQGTAGVVELKALQLMKLKNVTVVVTRYFGGIKLGAGGLIRAYSN SVTEAAKAIGVVKRVLQKELSFSIPYNRLDEINHYLEENDVFVSNRKYGTDVTFTLFVED KDIKPLEADLTNLLNGQVTLKEIGQRYNEILLKEVNYHEQ >gi|313656766|gb|GL545251.1| GENE 779 767815 - 768099 68 94 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_03340 NR:ns ## KEGG: LAC30SC_03340 # Name: not_defined # Def: undecaprenyl-phosphaten-acetyl-glucosaminyltransfera se # Organism: L.acidophilus_30SC # Pathway: not_defined # 35 91 330 386 388 87 68.0 2e-16 MHLWDFTSLFIYFIIIFTVTILGNLAFNSRFISCLRVFVESVGLLGDKYHPLLNLIQKMI NSTRRSDPTVEVWHLGGEKPNQLKRKTKEDKDND >gi|313656766|gb|GL545251.1| GENE 780 767964 - 768983 943 339 aa, chain - ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 2 338 14 373 443 302 47.0 6e-82 MFLIIVKLFFLVIIQTAVTPFIRRLAFVLGAVDNPNARRVNKKPMPTIGGLGIFVTFNIG TFILLREQFPTHEAFSILLASSVMILTGLIDDILELKPKQKLAGQFIAALIIYFLAGIKM KEIILPFSKQVINLGWWSLPITIFWILALTNAVNLIDGLDGLATGVSLISLSTMGVVGYF FLHTKELYIPIACFILAAALLGFLPYNFHPAKIFLGDTGALYIGFMIAILSLKGLKNVTF ISLIVPIIILGVPITDTVYAMIRRKLNHKPISQADKHHLHHQLMRMGLSHRQAVLCIYGI SLVFSFISLLFLLSPSWGIWPLILGLLVALEFLLNRSGF >gi|313656766|gb|GL545251.1| GENE 781 769088 - 769990 1108 300 aa, chain - ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 1 300 221 520 520 371 70.0 1e-102 MKGRIIGREGRNIRSFEALTGVDLIIDDTPKVVTLSGFDPIRREIAKRAMERLIKDGRIH PARIEEMVDKARKEVNDDIYEAGEGALIELGIHKMHPELVKVLGRLKYRTSYGQNVLAHS IEVGKLTGTMAAELGLDERLAVRAGLLHDIGKAIDHDIEGSHVEIGVELARKYHESDIVV NAIAAHHGDVPKLSFIAELVVAADTISSARPGARSESLENYIRRLTQLESIASGYQGVSQ AFAIQAGREIRVMVEPDKISDDRTTILARDIRNQIEKEMEYPGNIKVTVIREKRAVAIAK >gi|313656766|gb|GL545251.1| GENE 782 770176 - 770715 717 179 aa, chain - ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 6 178 5 156 520 65 29.0 5e-11 MKTDFIPVLIAIVSLLIGYGIGYLIRKLHWEKQAENARNDAQHLLENAHTKLDAIKAEVE VAKQTAKTVRQEAENNKKAQILEAKEEIRAYREQTENDLSKQRIELSHRDARLQQKEDAI QEKEKDLSKKDAQLTQTKNQLEQREADFTQKQTEADDLLAQRQKKLYEVAELSKEDAKK >gi|313656766|gb|GL545251.1| GENE 783 770842 - 771924 1415 360 aa, chain - ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 4 353 2 341 348 481 72.0 1e-136 MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKVDTQISTIPTGSLALDAAIGVGGYPRGR IIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPN TGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSG NINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSSDVVGN RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAVEKDIVDKAGSWYSYNDEKIGQ GRENAKQYLEDHPDIYSEIMTKVREAYGIDAKSLEEKEDPAKVKEKIDQDEKSSDKASKK >gi|313656766|gb|GL545251.1| GENE 784 772104 - 772667 270 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 182 484 668 904 108 34 8e-22 MNLPNRLTVFRIILIPVFMLVLILNFPVGNLEFANVKIPFSQILAAIIFAGASYTDYLDG HIARARGLVTNFGKFADPLADKMLVMTAFIFLVSMAKASAWIVAIIVCRELAVTGLRLIL VENDGEVLAAKMPGKIKTVTQMLAIIFLLLGDIFFIGTILLYICLIFTIYSGWDYFYQSR DVFKGEL >gi|313656766|gb|GL545251.1| GENE 785 772675 - 773427 794 250 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_03320 NR:ns ## KEGG: LAC30SC_03320 # Name: not_defined # Def: transcriptional regulator # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 177 106 283 371 105 40.0 3e-21 MLKNQMPRIILGAGVVIVIVIIYVLITSLFRGSSQQASDAGDSVTVSSQSDSSSSSEKSS STEKSHVKIKRLGYGSYQVTGLKNNRNLVIHAGTNDLSASVTIDGETKWKGTISSDSKHT VKLPESAKSVTIYLSNDTDTKVTVGGKKVPYTASGSSLNLRLTIGKVSSSSSSAATQSAT TNTSSQSSSVATSSSNTYRQSSQVSSSRTTTNQTTTNQTSQNTTTQSTGNTGSTSNTGNG NDAGQDNGGQ >gi|313656766|gb|GL545251.1| GENE 786 773394 - 773741 421 115 aa, chain - ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 105 1 104 311 91 43.0 3e-19 MANIGEKLRSAREAMGLSIADVEKTTKIQSRYLTAIENSDFDKLPGDFYVRAFIRQYAQV VGLDGKELLAEYHQDVPETNSDEYVENSIDNKTEEVKRPLIVKKVCLKIKCHVLF >gi|313656766|gb|GL545251.1| GENE 787 773794 - 774522 542 242 aa, chain - ## HITS:1 COG:lin1431 KEGG:ns NR:ns ## COG: lin1431 COG1028 # Protein_GI_number: 16800499 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Listeria innocua # 1 242 5 243 243 145 33.0 8e-35 MKRAIIFGATGGIGQAIATELAADGWSLYLHYSNQEQVASELADKLMSQFPEQDFIAIKL DFLASNMELQQFCQGLLPVNVAIFAQGITHYGFFGEQDLDNLEQEMKINLLTPLKLTRLL ESNLLKYKHSRIIYLGSVYGGQASALESAYSASKAALTRFSQAYAREVAASGLTVNVLAP GAVDTPMNAIFSEDVLDEVKSEIPAGRLALGKDISFWVKNILKPESDYLTGQTIYITGGW LI >gi|313656766|gb|GL545251.1| GENE 788 774533 - 775228 607 231 aa, chain - ## HITS:1 COG:no KEGG:LBA0661 NR:ns ## KEGG: LBA0661 # Name: not_defined # Def: protease # Organism: L.acidophilus # Pathway: not_defined # 1 227 182 410 417 145 37.0 1e-33 MHFIAVGDFAPSAVTRLFGQIKKLDKQYLQSGQKREHTFKPEMGNLGLKEFKNKTEVPYF CLGVKLPDFKKVLVNNDLGQILVEIMLESLLGENSSWYQDKMVHGELTSPLQFGVNYTRQ GNFATILGINNGNSLLNNVKETLFSSEKTAEQMDELKDLFEMQKKVSMATLLSAFNNLSE LGFELAEEAINGENIFDTIKLLQQMNFEKYWQICQDLLAESETCSVFSTVE >gi|313656766|gb|GL545251.1| GENE 789 775156 - 775767 230 203 aa, chain - ## HITS:1 COG:BS_ymfH KEGG:ns NR:ns ## COG: BS_ymfH COG0612 # Protein_GI_number: 16078749 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus subtilis # 6 163 1 170 415 111 33.0 8e-25 MKKLDIEKKTFSSGLTAQVVLRKGFKQKFFGIIVDFGSSDKQIPGAAHYLEHLLFSKKSG DITERFDEIGASTNAFTSYNATMFYANSIDNISKIVDLLFELVGDPNFSKKSIDKERPII DQELAMYRDEPTWPISDSIMKQLFGDSNLGLDIGGTSQTIKKINSRNLAKFIRKIIQPII CILLQLVILHLQQLLGYLVKLRN >gi|313656766|gb|GL545251.1| GENE 790 775764 - 776906 995 380 aa, chain - ## HITS:1 COG:L32666 KEGG:ns NR:ns ## COG: L32666 COG0612 # Protein_GI_number: 15673955 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Lactococcus lactis # 3 380 23 403 418 71 20.0 2e-12 MPLTGHNLAMASLLAKMQINSSQYFNTINKQARALTDLYNMTFDVAPQLYGRELILMYRL SYVEPLEVMDPEYSYEKIIETFSRIVRYPNLNSKVIKLVQNQLFNEYQELMASPTSYAWE HFFKKWYHDQPDFAHGIMGPINEILEADKEGLDAYTEALTTCPAAMIGYAKNSKYVVKIL KEAFSDYDFNAKFASSNLVIEALPDPFTDEEKRGFAQAQMLLGFGYNGQLNKKERLAGKF LARYLAGDDSSVLFRKIREQLGAAYAVDADNYVNNSLLLVSAGVNHDKLDQASQIAQEEI EKVKAGDIDEAIFKKVKKAIYNEHQYGLDRAGYRIMLQLRALLIPEYSFLDLGKSIRKIQ VTDLIKLANKLTLNESFYIK >gi|313656766|gb|GL545251.1| GENE 791 776964 - 779348 1969 794 aa, chain - ## HITS:1 COG:BS_spoIIIE KEGG:ns NR:ns ## COG: BS_spoIIIE COG1674 # Protein_GI_number: 16078743 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 16 784 15 777 787 593 43.0 1e-169 MPRKKKKTAKSKTVAQKELRWAIFGIFLVIYALLTFAKLGLIGKEFANVLRFFIGDSYPI LAFLFLMFGSVMLIYSKPPLIGFKRSSGLFLAYSGLVLELAANFFNRLDVFNGFINVFTK TILAEFSRGNLTESVGGGLIGSFYYNIFYPLLGNLGAVILGLILLISGLLMFFDVKFVQI LHLFQSSSQKFIETNKDAGIKLKDKYVEARDNYLQNRDNRKNLQDPLANNDDIFPDTGDM QVQSQNDLDVIPDLSKKTTNEQPVQSEPEIEIPTNPEEHDLPKSHAFAEEDQKMKMELGN VDHGEIKPTHVNSNYQKPPLDLLAPIKKVDQSSDKNLIRHNTQVLESTFKSFGVEVNVKK AILGPTVTRYEIQPAVGVKVSKIVNLADDLALALAAKDIRIEAPIPGKPLVGIEVPNKTT SAVSFKDVMLNQDNKSKANPLDVPLGKDVTGTTISANLTKMPHMLIAGSTGSGKSVAINT MLTSILMKANPDDVKLVLIDPKMVELSVYSGVPHLLIPVVTDAKLAANALHKTVKEMERR YKLFAAGGVRNIGEYNQKVIENNQDKEKPVMKKLPFILVVVDELSDLMMVGGHDVEDAIV RLGQMARAAGIHMILATQRPSVDVITGLIKANVPSRISFAVSSGVDSRTILDQVGAEKLL GRGDMLYLPIGAAKPERVQGAYISVEEVEKVVDWVKSQQEADYNEAMMPQKGEESSNNDN NDEPEDEFYNEAVKLVTKQQSASVSMLQRRFRIGYNRAARIIDEMEAKGIVGPSEGSKPR QVLVQPKMENDNGQ >gi|313656766|gb|GL545251.1| GENE 792 779368 - 779763 443 131 aa, chain - ## HITS:1 COG:lin0430 KEGG:ns NR:ns ## COG: lin0430 COG4835 # Protein_GI_number: 16799507 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 10 130 8 127 130 66 33.0 1e-11 MVEFTKETPVLVRNFHYDLNEENHVKSEVNIALRKAAQKDDEGNLLEAEGGSYFEIAVPF EVSPNPGEFTVSGLITQVVFLKDYYGDGQDLEKSDYKLLSRPLVEYIETLTYQLTSVALD EPVNLNFTPNF >gi|313656766|gb|GL545251.1| GENE 793 779765 - 780322 618 185 aa, chain - ## HITS:1 COG:SA1672 KEGG:ns NR:ns ## COG: SA1672 COG0219 # Protein_GI_number: 15927429 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Staphylococcus aureus N315 # 1 157 1 155 156 194 61.0 7e-50 MTNHIVLFEPLMPANTGNIARTCAGTETVLDLIEPLGFQLDNKKMKRAGLDYWDKVEIHK HDDLKAFLETLGPNDEMYLISKFSSKSYTDVDYTDENKNYYFVFGKETTGLPETFMREYY DRNLRIPMSNHIRAYNLSNSAAMVIMEALRQQGFPHLEKSHHYENDKLKDDYNRHERYER NLGDE >gi|313656766|gb|GL545251.1| GENE 794 780315 - 780536 252 73 aa, chain - ## HITS:1 COG:SPy1011 KEGG:ns NR:ns ## COG: SPy1011 COG0628 # Protein_GI_number: 15675014 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pyogenes M1 GAS # 1 55 329 383 393 58 47.0 4e-09 MHPITTILLLIGASAVWGLWGVIFGIPIYAVVKIVVSRSFNYFKSVSRFYNDEDLFEIGK ENQTKLDLGDKND >gi|313656766|gb|GL545251.1| GENE 795 780539 - 781315 627 258 aa, chain - ## HITS:1 COG:L197809 KEGG:ns NR:ns ## COG: L197809 COG0628 # Protein_GI_number: 15673164 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Lactococcus lactis # 11 255 2 247 313 152 36.0 6e-37 MMNPIVDFFEQKLKVPRTVTILVLFLLVLGALIWIINSLLPIIQNQVDALIKNWPNIWDT SVKTIQNLLHDPHLKGVKSNINSVIDSIEKTLFKSWQDTGTAALTNISSAVSVITMIFMT LLTAPFVLFYMLKDGHQLNGYLTKFAPRRWQDSFSRLLHDINEAISAYIRGQITVAVWVG IIYAIGYNIIGLPYGSALAVLAAFMLLIPYFGTFIALIPVLIIASITSWGMLINVLIVLQ LNKQLKHDLFLQLLLETR >gi|313656766|gb|GL545251.1| GENE 796 781598 - 783499 1981 633 aa, chain - ## HITS:1 COG:MTH1516 KEGG:ns NR:ns ## COG: MTH1516 COG0474 # Protein_GI_number: 15679513 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanothermobacter thermautotrophicus # 1 630 281 907 910 517 43.0 1e-146 MIVAFIPEGLLPTVTLSLAQGVKRMAKKHALVKELNSVETLGETTVICSDKTGTLTQNQM TIHYIRTLNDEFEVTGDGYVNNGQVELNGKQLWYDEHPDLKVITEIASLDNDTSIENKDG QNKILGTPTEASLVIMAQKAGYDIHKQMVKKPRLREFPFDSERKKMSTVNQISDSEAAVL VKGSYSDLIKDCNFVQVNGEVKPLTAEDKQKLDRLNADYARQGLRSMGLAYKKIKNDDAI SNLTIETAESQLVFAGLVTMSDPPRPEIYDAIKHCHDAKIRVVMVTGDSKLTAKTVAVKI GITSEKARVIDGRELDEMSDSELREALKDEVIFARVAPEQKYKIVKTFQENGEVVAATGD GVNDAPALKRADIGIAMGLSGTDVAKDAANMILTDDNFASIVAAIEEGRTVYSNIRKFLT YILSSNVPEAIPSVLYLLSGGLIPLPLTVMQILTIDLGTDMLPALALGAEPSDPDVMKRA PISRDEHLLNKRVLVKAFLWYGLLEALVSIAAYFFVNKQAGLVFGHLAASGDIYIKATTM TLGAIVFSQIANVINCRTEKVSVFKKGLFINPHIWTGILFEIILFIILTVTPGVQGIFNT GVLGISDWIMLCLIPIPLILIEEARKKLFRINK >gi|313656766|gb|GL545251.1| GENE 797 783502 - 784341 744 279 aa, chain - ## HITS:1 COG:sll1076 KEGG:ns NR:ns ## COG: sll1076 COG0474 # Protein_GI_number: 16329893 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Synechocystis # 16 278 23 308 972 196 37.0 4e-50 MDEKKIRELYAQSEIDSVYQTLNSSSKGLSSEEAEKRLEKYGLNEIKRPPKQSQWQTFIK NFTTLMAILLWISGFIAIVSGTMELGIAIWLVNIINGTFSFWQERQAQKATDALNKMLES YVQVYRDGKKKQVEAKHIVPGDVFALQAGSKVPADARIISATSLQVDQSALNGESVPESK RTSFDPGEGKYAESNMVYSGTTAVSGTATAICFSTGMDTELGQIAHLTQEQEKVDSPLTR ELNRLTKQISIIAFTIGLFFFIASIFFVKQPFGAAFILV >gi|313656766|gb|GL545251.1| GENE 798 784447 - 784653 252 68 aa, chain + ## HITS:1 COG:no KEGG:LA2_03375 NR:ns ## KEGG: LA2_03375 # Name: not_defined # Def: isomerase # Organism: L.amylovorus # Pathway: Pentose phosphate pathway [PATH:lam00030]; Metabolic pathways [PATH:lam01100]; Biosynthesis of secondary metabolites [PATH:lam01110]; Microbial metabolism in diverse environments [PATH:lam01120] # 1 67 1 67 342 65 49.0 9e-10 MKVFIGGYTKKTSKGIYQADLTIKDGQASLGNFTNCVELNGPTYFKKCGNYLFSIAKNKM KVGLASFN >gi|313656766|gb|GL545251.1| GENE 799 784833 - 785468 531 211 aa, chain + ## HITS:1 COG:L11851 KEGG:ns NR:ns ## COG: L11851 COG2706 # Protein_GI_number: 15674136 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Lactococcus lactis # 2 207 133 339 341 191 47.0 1e-48 MGPRPEQKDGAHPHFFDETPSGKLVSCDLGNDSVDFYDLKDGHLVHLARYLNEAGFGSRH IVFNKENNYFYVAGELSSKINVVKYNEKTWEFENIATYRTIPDDYTDHNGVAAIRMSNDG KFLYLSNRGHNSITVFKIKADHTLELVQRISTFGEFPRDFNWDSSEKWVIATNQNTDNAT LYERNSEMGTLAVVQKDVAVPEGTCVVFSKE >gi|313656766|gb|GL545251.1| GENE 800 785479 - 786309 790 276 aa, chain + ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 3 274 1 279 284 262 51.0 5e-70 MLINIIKAIILGIIEGITEFLPISSTGHLYLANYVVKLQENQSFIDMFMVVIQLGAILSI IVIYFNKLNPFSLSKTKLQRENTWKLWIKVVVAVLPSVIIGLPLNDWLDEHMTNWQVISA TLIIYGVLFILLENYYRNRDSKLTDLNKISFQMAFLIGCFQVLSLIPGTSRSGATILGAM LLGASRYVSAEFSFFLAIPTMFGASLLKIVKYVHAGHTFVGDQLAVLLVGMIVSFVVAYL AVKFLLKFIQTHDFKSFGWYRIALGIIVILIGVFVK >gi|313656766|gb|GL545251.1| GENE 801 786323 - 786514 203 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFNLLLVLLIIWLLFKLGIGLFKILTFLLGIIVIFYIASFILLPILIIFIIGLGITTLSK DFL >gi|313656766|gb|GL545251.1| GENE 802 786891 - 787250 368 119 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854906|ref|ZP_04645236.1| ## NR: gi|238854906|ref|ZP_04645236.1| lpxtg-motif cell wall anchor domain protein [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved domain protein [Lactobacillus jensenii 208-1] lpxtg-motif cell wall anchor domain protein [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved domain protein [Lactobacillus jensenii 208-1] # 1 119 22 140 140 188 100.0 1e-46 MSYLTSQNVSATTSSNSIMKKVVNSNKNLENRNRDDNAAARDNLNFNYNSTLPTSNITQS NIKKILFKTITFPQTFIKFATKLPQTGLQKSEVSLLGIIVLIFTSIVGYHGFFKKNDKE >gi|313656766|gb|GL545251.1| GENE 803 787415 - 788308 268 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 24 289 36 283 287 107 30 1e-21 MKIFKYIVTEKDPKRLGLFLSKKKLSKQVIVNAKHNGGMLLVNHRRRFTNFMLKNGDEVL FVMGKEKVNEFLKPSNKPIEIVLETDNYLVINKPANVLSIPSRYEDGDAVVNRVMGYFSK KKSSEQAFLKPHIVTRLDRDTSGLVLVGKNAVAHSKFSELKKDVFVKEYHAIVHSNFNPE EQAGLIDAPIGKIDDSVKRYVIPNGQKSLTQYEVLAQKEGASLVKLRLFTGRTHQIRVHM AHIGHPLFGDKLYGIDDNFARQALNCSHLSFPDPFTNEEKIVEVSDPQDMTDLWRNL >gi|313656766|gb|GL545251.1| GENE 804 788329 - 789096 796 255 aa, chain - ## HITS:1 COG:SPy1126 KEGG:ns NR:ns ## COG: SPy1126 COG0061 # Protein_GI_number: 15675106 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Streptococcus pyogenes M1 GAS # 2 246 12 257 278 233 47.0 4e-61 MKVAIVNNSHKKTIEVVEHLKKLLAEKKISLDEEHPDVVISVGGDGTLLSAFHKYEKLID SVRFIGVHTGHLGFYTDWRNYDIDQMVDALCTTAPSTSSYPLLELTLVMDDGRQERFLAL NETSIKRISKTLVANIYIKGELFENFRGDGICVSTPTGSTAYSKALGGAVIHPRLKALQM TEIASINNRVFRTIGSPIVIAPDEWITILPNDGHNLIMIIDGHRIPVDHVNRVIYRISKK GFTLISLVITIFGQE >gi|313656766|gb|GL545251.1| GENE 805 789096 - 789722 568 208 aa, chain - ## HITS:1 COG:SP1097 KEGG:ns NR:ns ## COG: SP1097 COG2357 # Protein_GI_number: 15900965 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 3 201 4 202 223 234 58.0 9e-62 MTDWETFLWPYNEAVQELKVKFRSLRQGFLTRGEHSPIEFVVGRVKTVDSIKEKMQRRII SPEVIETDMQDIAGIRIMCQFVDDIYKVVDLIHERSDMEVVEERDYIHAAKPSGYRSYHM VIKYTVFLPEGEKTLIAEIQIRTLAMNFWATVEHTLSYKYQGKYPEDVSKRLKSTAEAAY KLDEEMSVIRKEVQDAQKVFNQSKGKEQ >gi|313656766|gb|GL545251.1| GENE 806 789834 - 790499 381 221 aa, chain + ## HITS:1 COG:L164461 KEGG:ns NR:ns ## COG: L164461 COG4116 # Protein_GI_number: 15672342 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 169 1 159 197 63 33.0 3e-10 MSKNREIESKTLLEKAVFSAILRSFPSKTSFTQTNYYFDNDQKTLKNNKISLRIRLYPDK AEQTMKVPAKKLRQENYHEVIEINDNLSLKVAQEIVENSLNGGVTIFGHNCGTYLSNNFP DICQDLTIFSYSKTTRHLLTGPNNCELTLDETSYPDGYRDFELEIENDNPELIKQTLNTL LRQFNFHLNQKILIKVKSPGLAYIKNRQKNSIMPIHSLKYR >gi|313656766|gb|GL545251.1| GENE 807 790527 - 791159 509 210 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00656 NR:ns ## KEGG: LCRIS_00656 # Name: not_defined # Def: dithiol-disulfide isomerase # Organism: L.crispatus # Pathway: not_defined # 1 184 1 184 205 145 39.0 1e-33 MFEVFMFVNPIGTCCYQTEQTIMKTMKEADAITRYHLIPLANMKTIQSDLIRKHKCPTNL ETYNHASEETFTALKDYHAIKMAYGNKLARKYCLAVQHNINDLNKEYDTNLFQDLVEEFG LSLSKIKSAQMSAYLSESIAADERLAQKWHITDTPTTVIFNDEDENSGLIVEGHLLHDEL LQIINGNESPDFNELSASLIKLHSTNLRLL >gi|313656766|gb|GL545251.1| GENE 808 791170 - 791856 359 228 aa, chain - ## HITS:1 COG:SP0978 KEGG:ns NR:ns ## COG: SP0978 COG4469 # Protein_GI_number: 15900855 # Func_class: R General function prediction only # Function: Competence protein # Organism: Streptococcus pneumoniae TIGR4 # 31 141 84 193 317 77 39.0 2e-14 MGQQGEKEEHYRGKINLKTALVAAGFPAKEEVPLAKGELRADILVNSQLAFEIQCAPLSE MEFAHRHGLYKKEGIIDIWIVGRCHYLSNYLNQRQTIFLRFNQKWGFYYLEIDSERELLT LKYQILQEPLTRKIRYQVKRFRIDEVGISKLWQYKPQFIQYQLNKNNQKSYLLKQVQMQT KLGTRIAEQLYLRRISLNDLPDYLFNSWRSPGMRTSVEEYITKTATCI >gi|313656766|gb|GL545251.1| GENE 809 792091 - 792771 595 226 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_03225 NR:ns ## KEGG: LAC30SC_03225 # Name: not_defined # Def: adaptor protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 225 1 242 247 153 39.0 4e-36 MQVEKINENTIRVHMDSEELKSRGIRMLDLLGNKSEIQDFFYSILREVDTDHSFAGDNQP VTFQVMPNEGGLDLLITKYNKADADNIQKQLGNLLGMGNNSRESNSDPIERLNKGLGISE NYDKDSVTKEVSNQANFLFSDIDQVVQLADSLPTDKVAASLYTFKDHYLLQMNNLGSDED IDSGSVWSVCLEFGTVADNKTLNLFKNNGKCLIKQDALADLLSYFK >gi|313656766|gb|GL545251.1| GENE 810 792852 - 793250 450 132 aa, chain - ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 131 1 131 131 176 67.0 1e-44 MINLYVSSSCTSCRKARAWLKKHDIPFKERNIFSEPLTKEDIVNILRLTENGTEEIISTR SKAFQELHVNLDDLSIDQLLDLVEKNPSLLRRPIIMDDRRLQVGYNDDEIRRFLPRKVRR LELAKAQKLADL >gi|313656766|gb|GL545251.1| GENE 811 793463 - 795199 2162 578 aa, chain - ## HITS:1 COG:SP1176 KEGG:ns NR:ns ## COG: SP1176 COG1080 # Protein_GI_number: 15901041 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Streptococcus pneumoniae TIGR4 # 1 573 1 575 577 721 63.0 0 MTKTLKGIAASDGIAVAPAYRLVEPDLSFTKASVDDVEQEVARFEKAVETSIHDVESVRD IAKENLGEEEAQVFEAHLLILNDPEYIGAIKQEIKDSKVNSEFALDETSQKFITIFESMT DNEYMKERAADIRDVSKRIMAHLLGKNLPNPAAIDHEVVVVAHDLTPSDTAQLNKDYVKG FVTDIGGRTAHSAIMARSLELPAVVGTDSITSDIKDGQLLVVDGLDGLAVIEPSDEEVAD YKKKGEAFLKQKAEWKKLKDAPSVTKDGKHFTIAANIGTPDDMAGVLENGAEAVGLYRTE FLYMNSSELPSEDDQFEAYKKVIEGMNGKQVVIRTMDIGGDKHLPYLPLPEEMNPFLGYR AIRISLKEDQIFRTQLRALLRASAYGRLGIMFPMIGTLAELHKAKAIFNEEKEKLVKDGV KIGDDIQVGMMIEVPAAAVLADQFAKEVDFFSIGTNDLIQYTFAADRGNEHVSYLYQPYN PSLLRLIKHTIDAAHDNGIWCGMCGEAAGDSVMFPLLLAMGLDEYSMSATSILRIRSQMK KLDTKDLEGLVDKAINESLTNDDNKKLVEDLMNKLNLG >gi|313656766|gb|GL545251.1| GENE 812 795199 - 795465 407 88 aa, chain - ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 110 72.0 5e-25 MEKRDFHIIAETGIHARPATLLVQAASKFSSDVNLEFNGKSVNLKSIMGVMSLGVGKDAD VTISAEGDDAAEAIEAISDTMKKEGLAE >gi|313656766|gb|GL545251.1| GENE 813 795568 - 795750 144 60 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00650 NR:ns ## KEGG: LCRIS_00650 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 60 1 60 60 77 63.0 1e-13 MDYESILNQLVDGELTEYKIEAKDAFAFQQALRAFGKRTYIKGRALRGGAIIYTASNSNE >gi|313656766|gb|GL545251.1| GENE 814 795913 - 797046 831 377 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 30 363 132 458 815 324 50 1e-172 MLCQNCYQEFRASQGGNLGNDNINNDNYDNNENPNMGDLFGNFNNLFGSMNSASASQMQN PKGPGRGGNGNSILDQYGTDLTALAKQGKIDPVIGRDKEIARVIEILNRRTKNNPVLIGE AGVGKTAVVEGLAQEIVDGSVPAKLQNKRIVSLNIVSMVQGTGVRGQFEQRMQRLIKELQ SNPDLILFIDEIHQIVGAGNAEGGMDAGNIIKPALARGDFQLVGATTIKEYREIEKDSAL ARRFQPVEVKEPSVDETIKILHGIQKRYEDYHHVHYTDSAIESAVKLSSRYIQDRYLPDK AIDLLDEAGSRMNLTIPFVDKEKIKERIDAAQQLKQDALKNEDYEKAAYYRDQIEKYDKM KDQKVDPDKSPVITDKL >gi|313656766|gb|GL545251.1| GENE 815 797043 - 798017 781 324 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 3 323 484 813 815 305 47 1e-172 MNKIVEEKTGIPVGDIQKQEENQLQNLASDLKAKVIGQDKAVEQVARAIRRNRIGFNKSG RPIGSFLFVGPTGVGKTELAKQVALKMFGSTDAMIRFDMSEYMEQYSVSKLIGSAPGYVG YEEAGQLTERVRHNPYSLILLDEIEKAHPDVLNLFLQILDDGRLTDSQGRTVSFKDTIII MTSNAGQGIKNAIVGFTAEANPSKESTRSSMSQFFKPEFLNRLDDVIEFNPLSKEDLLKI VDLMIAKTNSMISDQGLHIDVTDAAKEKLVKEGYEPSLGARPLRRTIQEEIEDKVADFKL DHADVKNFIADLANDEITISAKED >gi|313656766|gb|GL545251.1| GENE 816 798116 - 798394 394 92 aa, chain + ## HITS:1 COG:no KEGG:LJ0814 NR:ns ## KEGG: LJ0814 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 92 32 123 123 113 66.0 3e-24 MHLIDVTNTYSDLVQNQLNSTSAQYIKVYSLGNSSVVYTETDSDIEIVIENHDRKIKDEE VEFLIRRLIHDDRSYDITIDKTKKIIAITCKK >gi|313656766|gb|GL545251.1| GENE 817 798456 - 799070 201 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 9 195 140 334 345 82 30 8e-14 MDPAEHNSYPGNVKVKVKYILNNNNQLKYQIRALSDETTLFNPTNHTYFALDQPNNISDT TLTIAADYFKPLDNEHLPYKGWQSVDKTAFDFRNGQKLANVINSDDSQILAEGGLNHPFL LNNGSDFAAKLETAEHAVTVKTTAPSVVVYTANHFNKTGIANNIDKFAGVALECQYPPVS GSDVSAITLLAGEEFYLENIWNFE >gi|313656766|gb|GL545251.1| GENE 818 799088 - 799465 162 125 aa, chain - ## HITS:1 COG:BH2755 KEGG:ns NR:ns ## COG: BH2755 COG2017 # Protein_GI_number: 15615318 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Bacillus halodurans # 1 98 1 99 348 58 30.0 3e-09 MEIKIEKYGQYLEKNLYEFTLINNQGLVVKLLNYGATLEKVLMPSKAGLQNMVLSLPSRL DYSKERNFLGGTVGRIVGRIHGHTWNLGNKKVVLAMNEEKIIFMVVLMGLTSKFIISNSR SLLKK >gi|313656766|gb|GL545251.1| GENE 819 799495 - 800895 1593 466 aa, chain - ## HITS:1 COG:SP1829 KEGG:ns NR:ns ## COG: SP1829 COG4468 # Protein_GI_number: 15901658 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 466 21 488 491 548 56.0 1e-155 MDKIYLTNHLLSLVGDEALNLPAAEDFLKNLDSLVEVAVTNKKIADTLSAKQILEAQIMD LATPSPSQVNHVFWDKYQAGAKRATDWFFNLSKANNYIQTRAIAKNIVFPAKTEYGDLEI TINMSKPEKDPKDIAAAAKLKNAGYPACALCMETEGYAGRNNFAARANHRIIRFLLGGKV WGFQYSPYAYFNEHAIFLDEKHEPMVINQTTFSNLLAIIDMFPEYFVGSNADLPIVGGSM LSHEHYQGGRHVFPMAKAKIETELNLSDYPDVKAGIVKWPMSVIRLVSSDKGELINAAEH IRKIWANYTDEKVNVRAVTNGIKHHTITPIAQKVAGKYQLDLVLRDNQTSDKYPDGIFHP HADVQHIKKENIGLIEVMGRAILPARLKSELNEVKKYLLNQPNQLNPIHKTWADELSQEY SWNETNADAQLQVAVGKVFARVLEDAGVFKRDKVGMAAFKRFCEKI >gi|313656766|gb|GL545251.1| GENE 820 800942 - 801946 970 334 aa, chain - ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 324 2 325 328 423 60.0 1e-118 MAIAVLGGAGYIGSHTVKQLLAAGEDVIVLDNLITGHRKAVDRRARFYQGDIRDFKFLSS VFSQEKVDGIVHFAAFSVVPESMKNPLKYFDNNTCGMVTLLEAMKQFGIKRIVFSSTAAT YGEPKQIPIKETDPQIPTNAYGESKLAMEKIMHWADLADGLKFIALRYFNVAGAMPDASI GEDHSPETHLIPIILQVAAGKRLNLQIFGNDYPTKDGTNVRDYVHVLDLADAHVLALKYL EAGNSSTAFNLGSATGFSNMEILQAARKVTDKEIPASIGPRRSGDPSTLIASSEKAKKIL GWKPKFDNIEKIIETAWKWHENNPEVLVIVIDSN >gi|313656766|gb|GL545251.1| GENE 821 801966 - 803132 1273 388 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 1 387 5 391 392 415 55.0 1e-116 MKSTNVKKGFIEQFGKEAEHAFFAPGRVNLIGEHTDYNGGHVFPCAITLGTYAAVGSNNQ DAFLLYSDNFPDVGVVKIAFADLTKEKQGLWTDYFQGIAQVMQAAGLEYSHGLDVYISGN LPDGAGLSSSASLEMLVATILNELFAGNFAPIELVKFGVKVENDYIGVKSGIMDQFAIEM GKENQAMLLDTNTMKYEYLPVEMGDNVIVIMNTNKRRELVDSKYNERRSECEEALARLQK DLSISSLGDLTEDEFDENTYLIYDPTLIKRARHAVFENVRTLNAAKALQAGSLKEFGKLI SASGVSLAYDYEVTGKELDTLVTAALKQEGVLGARMTGAGFGGCAIAIVNRDNVENFINK VGRIYREKIGYDAHFYVANIADGAKQLS >gi|313656766|gb|GL545251.1| GENE 822 803287 - 803820 497 177 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854924|ref|ZP_04645254.1| ## NR: gi|238854924|ref|ZP_04645254.1| hypothetical protein LACJE0001_0892 [Lactobacillus jensenii 269-3] NADH dehydrogenase subunit 1 [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0892 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] NADH dehydrogenase subunit 1 [Lactobacillus jensenii 208-1] # 1 177 1 177 177 285 100.0 1e-75 MKTKLPNLIYAALAFFVQLKLTTYLRQYTPNNPLQHLLFTLYMFALVVTIILTASWASNL NKKQAGIIIALEFILISASLILPSYKPSSVFLELLLFYGLIPLLGQGIAMANLSKDMSKT KIVRPAMLVCGLVLSFAMIYIYSLDLNYTISTKLAYIWGVIILLIYGMCWRMGTKNK >gi|313656766|gb|GL545251.1| GENE 823 803961 - 805532 2244 523 aa, chain - ## HITS:1 COG:L0369 KEGG:ns NR:ns ## COG: L0369 COG4108 # Protein_GI_number: 15672331 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Lactococcus lactis # 5 523 3 521 523 726 67.0 0 MAEKLLDQVNKRRTFAIISHPDAGKTTITEQMLLFGGVIRSAGTVKARKSGHFATSDWME IEKKRGISVTSSVMQFEYEGKRINILDTPGHQDFSEDTYRTLMAVDAAVMVIDSAKGIEP QTKKLFKVVRKRGIPIFTFMNKLDRDGRDGLDLVAELEDILGIEGVAMNWPIGSGKSLKG LYDIQNNRVELYRKDGDDHFIDLDSDGKLPESEELSQDSLYLSALDEIELIKEAGNTFDE DKVLAGEQTPVFFGSALTNFGVETFLKSFVDLAPAPSSHKVNDDEELKPDDDEFSGFIFK IQANMNPNHRDRIAFVRIGSGEFEKGLDVTLARTGKAVRLNNATEFMSSERVQVSKAVAG DIVGLYDTGNFQIGDSIYAGKRKIVYEPLPEFTPELFMRVTAKNVMKQKSFHKGMNQLVQ EGAVQLYRNFNTDEYILGAVGQLQFEVFKFRMQNEYNSEVEMTSLGKRVARWIDPEQLDP KMSSSRNLLVKDRYDKPLFLFENEFAMRWFHDKYPDVKLTEKL >gi|313656766|gb|GL545251.1| GENE 824 805532 - 806395 948 287 aa, chain - ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 6 286 163 444 449 237 46.0 2e-62 MSSDPAASNFFENLRKKFAGEEESEPLEQLEQEIEKLHDNKAINDTVYSMFTGILSFQGK MAREVMVPRTDAFMVDINDDFQDNLDDILHEPYSRIPVYDQDKDKIVGVIHIRTVLRKAR KLGFDKLDYQEVMYKPLFAPETIELGELLVEMQKRQQQIAILTDEYGGVVGLATIEDLIE EIVGDIDDEVDTAEVLFTKLSDNKYVIYGKMTLDDFNEEFDTDLEMEDVDTVAGYVITEL GMIPAKGEKLTVRLDNGMVLTTRRMKGSRILTLLLTIPDKKKEEIED >gi|313656766|gb|GL545251.1| GENE 825 806515 - 806976 419 153 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00638 NR:ns ## KEGG: LCRIS_00638 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 153 1 153 153 190 66.0 2e-47 MEKKRIYLVFVFLLLIPYLCSLAVIGIGYNALVLHSSSIWRSIIGALTGSFIMFAIKATI QRPLDLMANQIKEGFFEQFLRFFSVRRRPWLQLANIVLDFALCYIATFLARIFLNLDQIV GNSVGITLIVMFVSTCIGAYLEYDNLSIDPRQH >gi|313656766|gb|GL545251.1| GENE 826 807133 - 807453 436 106 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_03175 NR:ns ## KEGG: LAC30SC_03175 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 91 1 91 159 96 51.0 3e-19 MKTTINELYFYGRPFPASLIDQNRSFAEQNMMMENDEEFTSFLKENNLENNRASLVVFNP DSFMYWYGAISEHELTKNHGMLKMNLPKSEVAIKETNGDLANLSRH >gi|313656766|gb|GL545251.1| GENE 827 807464 - 807733 310 89 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_03170 NR:ns ## KEGG: LAC30SC_03170 # Name: recX # Def: recombination regulator RecX # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 89 182 270 270 99 60.0 4e-20 MTLKLLQHGFRTDLVQAIIDDLDLVNEETQEDEALRKQGIKAYKRFKRLDESQRKYKIRT YLYSHGFSNSDIDRFLAGEVISLSELDEY >gi|313656766|gb|GL545251.1| GENE 828 807919 - 808278 350 119 aa, chain - ## HITS:1 COG:lin1801 KEGG:ns NR:ns ## COG: lin1801 COG2137 # Protein_GI_number: 16800869 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 3 117 2 117 269 85 42.0 3e-17 MPKITKVSAQKRSGRYNIFLDNKYAFSASERTLTEFRLFKDSVLTEKEIEKIKQFDTDAK ASELAARYLSYQIRTIDEVRQYLVKHELSPEAIDSAIEEFINLGYLNDLEYARLFIKMT >gi|313656766|gb|GL545251.1| GENE 829 808674 - 809792 1078 372 aa, chain + ## HITS:1 COG:SP1901 KEGG:ns NR:ns ## COG: SP1901 COG2265 # Protein_GI_number: 15901728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 367 69 433 436 310 45.0 3e-84 MAHLSYDKQLEFKKDIVLESLRKYHPRGYQKYKVKNTIPAKENWHYRAKAQYQLEFSKGK TKLGMYAPNSRRLIDLPEMPTQSKNTQKTERLIKKLIDKYHMPVANWRKHFDGIKTVVVR EAASTGEMQVTFITIGKKINGLKKLAQEVMKLDNVVSVFQNETDWNNPQIWGNKTIKLAG KNQIVEHILDKKFALSPRAFFQLNPEQTEILYSEAIKLLNLAPDQVLIDAYSGVGTIGLI ASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNAEYLQGSVEKILPQLKNSGVPIDALIVD PPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQDLVMLSEVYDVRVIENVDMLPQTARC EAIAKLVLRKDN >gi|313656766|gb|GL545251.1| GENE 830 810207 - 811364 1361 385 aa, chain - ## HITS:1 COG:lin1454 KEGG:ns NR:ns ## COG: lin1454 COG3425 # Protein_GI_number: 16800522 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Listeria innocua # 1 385 1 388 388 336 44.0 4e-92 MKVGIDKIGFYTPNKFVDMVDLAKARDVDPGKFLIGIGQNKMAVADKSQDAVSMAINATS EYIDKIELDKLGLLVFGTESSVDQSKSASLFVKKALNLPKNIRTFELKEACFGLTAAIMT AIDYVKAHEDKTAIVIGSDIARYGVATPGEVTQGAGSISLLIKKDPSIMEINSETSMYSD DIDDFWRPNNFKCALVDGKYSTNVYLDFFKHCFEDYTQKQNLKTSDFEALLFHLPFTKMG QKALKLAIEGQDPETTARLLDKFVAGATYGKEVGNIYTASLYMSLLSLLEVDQPKAGSLI GLFSYGSGAMAEFFTGRLVDGYEKQLAPEKHKEMLEKRQKLTVAEYEEVFNESLKDLAES QEVQSDANGWYFAGTSNNIRKYSRK >gi|313656766|gb|GL545251.1| GENE 831 811367 - 812593 1189 408 aa, chain - ## HITS:1 COG:SP1726 KEGG:ns NR:ns ## COG: SP1726 COG1257 # Protein_GI_number: 15901559 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Streptococcus pneumoniae TIGR4 # 34 404 46 423 424 259 41.0 1e-68 MKFYQLPISERRKMLLQNGIKLNHVDDDLLSELDLLSENVIGKLTLPLSVLQTAIVNGQS FQVPMATEESSVVAAANHGLNIFNQNGGVSAKSERTGIWGQLVFEVAEFSLAEFEAKKPD YLKLVNEEFASLVKHGGGVRQIIAEVKTDLLFLRVLVDPAESMGANRTNTILEFLGQKIS QDFTIEKLYAILSNYPSQYTCAKVSLAFASLTKTKDEKIGEKIAQKIVLLSKIGQEDPYR AVTNNKGIMNGVDAILLATGNDFRAVEAACHQAASLSGSYQSLSNWRIEDNKLVGEIKLP LAIGVVGGSIKSRSDVQVAYRILRQVTASELAEIIAAVGLANNLAALLAISTVGIQKGHM SLQIRNVLKNLTATDEEKNSVKELMQKQKRYSETDAKKFLQEIREENN >gi|313656766|gb|GL545251.1| GENE 832 812597 - 813742 1466 381 aa, chain - ## HITS:1 COG:L11745 KEGG:ns NR:ns ## COG: L11745 COG0183 # Protein_GI_number: 15673553 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Lactococcus lactis # 1 367 1 364 379 332 51.0 8e-91 MQDIYIIAAKRTPFGRYRGQLAAFNAVELGTYALKDALKAANLRSSDLDALFMGNVLSAG LGQNMARQVAINSGMREESVATTINEVCGSSLKAVRLAQAQMLIGDLDLVAVGGSESMTN APLLAKKSEKDNPNFVDSMLNDGLTDSFSNKLMGNTCENVAVKYGISRAEADEFSVNSHQ KAARAQAAGFFNQEITPLAELDHDENVRPDSNVEKLASLKTVFKEGGVATAGNSSPLSDG ASMLILATEDKVKELNLKPLAKLTAYAEVGLDPQIMGFGPKVVIEKLLQENGQTLADIDL FEINEAFAATSLAVEKELHLDHSKVNIHGGALALGHPLGASGARILGTLAHSLISENKER GIASLCIGGGLAIAFEIERGK >gi|313656766|gb|GL545251.1| GENE 833 813784 - 814221 527 145 aa, chain - ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 145 167 308 308 160 51.0 7e-40 MGGATTMMTSGLKLPSQVKAFIEDCGYTNAKNEIEHEAQAIYSMPTFPRFPLVEILSGIT RLRAGYFLGDADSIKMLKHNTKPMLFIHGAKDTFVPTEMVYKNYRASRGPKQLWVVPGAS HAKSFATHPHEYKAKIKAFLNKYIK >gi|313656766|gb|GL545251.1| GENE 834 814236 - 814736 366 166 aa, chain - ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 12 150 8 144 308 94 36.0 1e-19 MGKKSKKSKRLKWLSAILALIVLAFLGAGMYFYNVAIVPGHKTFLSSNKPLTKSDSLYQE KLWYKKATKKHLYMMSSDNKLRLDANYIKNNNSKKTVIILHGYMNNKDGMGEYAALFHSL GYNVLLPDARGHGQSQGNYVGYGWMEKDDVKNGFRNCSKIILNKRL >gi|313656766|gb|GL545251.1| GENE 835 815226 - 816128 1278 300 aa, chain - ## HITS:1 COG:L177590 KEGG:ns NR:ns ## COG: L177590 COG1210 # Protein_GI_number: 15673321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 2 298 12 309 313 389 68.0 1e-108 MKVRKAVIPAAGLGTRFLPATKAMPKEMLPILDKPTIQFIVEEAKASGIEDILIVTGKSK RPIEDHFDSNPELEANLEEKHKEQLLELTQSITNLGVNLYYTRQPHPAGLGDAIYRAKSF VAGEPFVVLLGDDLMSDKIPLTQQLINRYNETHASTIAVKRVPHEDVSKYGIIAPDGEIA NGLYNVKSFVEKPAVDKAPSNLAIIGRYLLTPEIFDILGKQKPGAGGEIQLTDAIDTMNK TQRVFAHVFNGERHDVGNKEGYLETSIEYGLIHPETKDALREYILDLAKKLEAEKKPNKK >gi|313656766|gb|GL545251.1| GENE 836 816196 - 817056 737 286 aa, chain - ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 12 275 19 276 289 113 27.0 4e-25 MIKKFDWRHFFKLLSKRMSRGEINQGSIVIAYYLLFSMFPIIIIAGNIMPLFHLKSGVVE EYLIYGLPAKVADFIMPIVKAVLQKQSTGYISFGVLIALWSFSSLTNAMRISMNRIYGVR QQELRFSFGRKLLERGVVVLITGSMIVLLMLLTIALTFGQEILNSVKAFLGISYLGIESI FTYKWLVLIVVMLVVIAYFNFALPNVQKRKRAIWPGVFVNLIGWAGLSYLFGLYLSHFKL SFENYGIVGTFIIFMLWLNLSSLLFLLGVCVNATFDELTHGDIEIR >gi|313656766|gb|GL545251.1| GENE 837 817049 - 817876 1194 275 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 261 1 252 252 273 54.0 2e-73 MITLKSARELKGMQKSGRLLASLFEALRDVIKPGISTWDIEEFAQKFMKERGGRLSEQGF EGYKYGTCISVNDEIAHAIPRKNLILQEGDLVSVDVTCNLDGYETDSCTTYPVGKISEED QRLLDVTKKAMYLGIDQAQVGNRIGDIGAVIQHYVEDENGFGDVRELIGHGIQPTIHEDP EVPHWGKAGHGLRLKEGMTITVEPMLEAGGDWRIMQKTVDDPNDDWVYYVTPDGSKAAQF EHTFAITKDGPKILTLQKPYDGLEKYLPHFDELDD >gi|313656766|gb|GL545251.1| GENE 838 818086 - 818532 541 148 aa, chain + ## HITS:1 COG:SP1297 KEGG:ns NR:ns ## COG: SP1297 COG0716 # Protein_GI_number: 15901157 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pneumoniae TIGR4 # 4 145 5 145 147 110 45.0 6e-25 MQVKIVYASMTGNDEDMAEILEEDLQDAGFEVDSSDVSFTDASDYLNADICVFVTYTYGE GKMTDELEDFYDQLKSLDLTGKRFLVMGSGDKTYKDHYCENVFDFEKVFLACGAEEVVKP LTVENAPADDDIAKIDEIADELAEKFNG >gi|313656766|gb|GL545251.1| GENE 839 818525 - 818995 425 156 aa, chain + ## HITS:1 COG:no KEGG:LBA0621 NR:ns ## KEGG: LBA0621 # Name: gtcA # Def: cellwall teichoic acid glycosylation protein # Organism: L.acidophilus # Pathway: not_defined # 1 144 8 151 174 171 64.0 1e-41 MVKSDRTLLRKQGRKLLRRYRNLYVYMFFGFIAALINTIVFVVLHNNFKVVLVFANTLAF IISNLASFYFNHYAVFTHHVDTSKSIWRKLVAFFTFRIISIIPDTLIMLVGLSVLRWNAV LVKLIDQLLVGIFNYLTTKAVFQKTTILLESEFGNT >gi|313656766|gb|GL545251.1| GENE 840 819062 - 819496 567 144 aa, chain - ## HITS:1 COG:BH2982 KEGG:ns NR:ns ## COG: BH2982 COG2153 # Protein_GI_number: 15615544 # Func_class: R General function prediction only # Function: Predicted acyltransferase # Organism: Bacillus halodurans # 2 143 3 148 155 103 35.0 1e-22 MWYVKKWNELTPDEIWQILDLRISTFVVEQKRIYHEIDKTDLSALHVFAIENDKIVAYAR VFLDGKHVSFGRVVTSEAVRGQGYGMKLLKKIMNAIKENFPGREIEIESQEQVQDFYKKV GFKTIGAPFIFESTPHIKMIHESL >gi|313656766|gb|GL545251.1| GENE 841 819660 - 819938 313 92 aa, chain - ## HITS:1 COG:mlr8209_1 KEGG:ns NR:ns ## COG: mlr8209_1 COG1846 # Protein_GI_number: 13476782 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mesorhizobium loti # 3 84 13 94 160 58 34.0 3e-09 MLNNKEIDIIRKFNRQYVIALGVLNKKIFKTDLSWPEGRILEKIAEEDEITPIQIVHKLK IDKGYTSRVISQLEKKRLIEKSLIQKIDALLN >gi|313656766|gb|GL545251.1| GENE 842 820070 - 820807 877 245 aa, chain - ## HITS:1 COG:lin2681 KEGG:ns NR:ns ## COG: lin2681 COG0381 # Protein_GI_number: 16801742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Listeria innocua # 1 244 137 377 379 283 56.0 2e-76 MNRQLTDVLSDLYFAPTSLSKQNLLKESHPEDNIFITGNTAIDALHETVQKDYHHDVLDE IKPGNRVILVTMHRRENQGEPMRRVFKVMKQVVDSHDDVEIIYPVHLSPRVQAVAKEVLG GDSRIHLIDPLDVVDFHNLAQRSYFIMTDSGGVQEEAPSLGKPVLVLRDTTERPEGVEAG TLKLVGTEVDKVRTEMVKLLEDKAAYEEMANAKNPYGDGHASDRIMDAIAYYFDKANTKR PAEFE >gi|313656766|gb|GL545251.1| GENE 843 820941 - 821210 383 89 aa, chain - ## HITS:1 COG:lin2681 KEGG:ns NR:ns ## COG: lin2681 COG0381 # Protein_GI_number: 16801742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Listeria innocua # 1 88 1 89 379 112 65.0 2e-25 MKQIKVMTVFGTRPEAIKMAPLVLKLKSDARFEEVTVVTAQHREMLDQVLDIFKIKPDYD FNIMHKNQTLADITTKVMTMLTDTIKKKA >gi|313656766|gb|GL545251.1| GENE 844 821279 - 821458 154 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|260664230|ref|ZP_05865083.1| ## NR: gi|260664230|ref|ZP_05865083.1| predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein LBJG_01125 [Lactobacillus jensenii 1153] hypothetical protein LBJG_01125 [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] # 1 59 1 59 59 82 100.0 7e-15 MDLRFLYLLISGFLITIGSFCVVFGIAEKSNLKKWILISTGLFCWGIVAILLVVKIVRY >gi|313656766|gb|GL545251.1| GENE 845 821626 - 821922 392 98 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1868 NR:ns ## KEGG: LGAS_1868 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 95 1 95 99 98 70.0 1e-19 MNKLVRDKIPEFVTNAKFRKLNQDEILPALKNKIVEEANEVKDATSEENLIEELADVYTV LKAFLDFKGITEEELLKVVNDKKAFKGDFSKFLFMEKS >gi|313656766|gb|GL545251.1| GENE 846 822112 - 822813 488 233 aa, chain - ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 10 225 236 451 454 216 51.0 3e-56 MVTGTYFGNWLLTTIQNPLTKMGQGFGIVLLITFLLHAFYFFGINGMSVLVPVIDSIWLT PQNANLAAVKSGHAVRYLWTRNSFDIYSWIGGTGDTLVLILLILLISKRSDFRTLAKIAI GPGFFNINDPIVWGLPLVLNPVYLIPFILAPIANVTLAYWATAWHLVEPVSTSVPNVIPP FLNAFLATNYDWRALALVALNMIVAILIWLPFVLAGERIAKEQEKRNLFSFEY >gi|313656766|gb|GL545251.1| GENE 847 822807 - 823535 352 242 aa, chain - ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 39 238 7 223 454 127 33.0 2e-29 MKLRKRKSITKSVKEIKKIRDIIPEKRKSSGNYKRFIYFLERWVLPLATTMAKWRWLVAL RDAFISVMPISIVGSLTVLIPGLINAAKAELGLGAITYALMPVVNISNLIYQGTFKLFSI YFALAWGYQLARSFEVNRLAGAITSLGCYLMSIANVVKLNLNGDEVSIKNAFNTSQLSSL GLFTSLIFGAAGLAIFILMTKARLTLRFSSYMPHAEEAAFIALIPMIISLSVIGAINYIS KW >gi|313656766|gb|GL545251.1| GENE 848 823447 - 824673 1306 408 aa, chain - ## HITS:1 COG:lin1833 KEGG:ns NR:ns ## COG: lin1833 COG0513 # Protein_GI_number: 16800900 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 12 407 16 416 442 194 32.0 2e-49 MYSEKIQTVLNKEGKINPTLIQKASYESLKSGSNVIGLAKTGTGKTLAYSLPLLETTKPG DDASVVIFEPTTELAIQTRNAIRPYALALGLNVLALVGSGNRSRQIEQLKKRKPEILVVT PGRFFDLFSDNKIKLSKIQKLVIDEADDILEFTKLELLSSLGQNLPTTSQVVLFGATESS VTQEAEELFATNFFLIDVRPEQKSPVEHYFLKVTNRYKIQFLQRLVKLDGFKGILFFDSN ETLEKFARIFSHSQTKFDLLTNNQPKTRRQKAINDLVAGKTRLLLATDLAARGLDIPKLT YVVNYELPEDENTYLHRAGRTGRMGHDGFVVTLGDDHDLRDMRKLLSDIDLKQVYFKGFG LSTEKPKKTEKKQLEKAVSNEVKKAKKHHKKRKRNQKNKGYHPRKEKK >gi|313656766|gb|GL545251.1| GENE 849 824673 - 825407 565 244 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0568 NR:ns ## KEGG: LGAS_0568 # Name: not_defined # Def: lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: L.gasseri # Pathway: not_defined # 7 239 2 232 238 228 48.0 2e-58 MFLGGFIVPHFRHRSTLPLIIISLICVICALFFAYRSLPKRTTLPTGSNLSVVGVKLDQY RDSVDLHKLQAAGISFVYLRATQGKSYFDDEYDRYRSQIQGTNLAFGSVLYFSDESTVKA QYRYFNKKTNSNTGSLPILLEAAPGSNSNKLSFWKHMGQLATLFLKDGKSVMVQGSIKYK KYFPISTKFMSTDNRAPNKLQYAFWRYTNKGHVKNVEAMEYDVEMYAYNGTMGQYKQLYG DLTQ >gi|313656766|gb|GL545251.1| GENE 850 825505 - 826512 818 335 aa, chain + ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 324 7 333 440 234 43.0 2e-61 MKKEITFAQGLATLVGSVIGAGVFFKIGTISHQTNSAGLTIFVWLLAGFLSLASGLTIAE VAAELPVNGSIQYLEYTYGSIWGFLFGWAQIIVYFPAEAGASSSIFGTQASNLFGNKIAA LPISLCMITFIFLTNLLGTKFSSKLQSIVTVIKVIPLILIIIFGLMAPEQHFSFTSFASK NAVPLVTAISGGLLSALFAFDGWVSVTNLAGDLKNPQKDMAKILIWGLGIVTAIYVLVNF VFLKILPFNSIFGNQNTAFNTSIKLFGNMGGKLVTIGILISCYGAANAFMLTGMRAPYIL AQNNLLPFSKKFKQANKKLVYLFGEQLQSGLLQCS >gi|313656766|gb|GL545251.1| GENE 851 826503 - 826799 202 98 aa, chain + ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 3 96 344 437 440 104 52.0 3e-23 MLMISLGNFDILTDMLVFVMWFFTIMLTLCQPVLRRRKPNLKRPFKVPFYPITPIIALAG GIFIIIMTIINQFWLSLIGSGLTALGLPIYFYKKKQNK >gi|313656766|gb|GL545251.1| GENE 852 826848 - 827411 661 187 aa, chain - ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 9 180 5 176 179 177 50.0 1e-44 MRDNIEDILESTLFSRDDIHEMCVRLGKQLTEDYAGKEPVLVGALTGAIFFMTDLAREMD VRCKMDFIDVSSYGNGTESSGKVKLVKDVTTDVKGKDILIIEDIVDTGHTLKFMKEHFIS LGAKSVKCVALLNKPSRRVDNVSVDYYGSEVENQFVVGYGLDFYNMFRNIPYIGVVKPEV IQAYANK >gi|313656766|gb|GL545251.1| GENE 853 827605 - 828672 1033 355 aa, chain - ## HITS:1 COG:L84992 KEGG:ns NR:ns ## COG: L84992 COG1253 # Protein_GI_number: 15673816 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 1 346 50 391 430 201 31.0 1e-51 MVRNLNEYLSTTQVGTTLVGVVLGWFSTDTLSELIIRGLKISPLSESLAKSIGAVLGVLL LTYLEVVFTEIVPKNIAIDMPVKMLMVIVTPLKCFHTLVYPFVWILNTSSNGVLKLMGFK EAAEENEIYSQSEIIKLSRLAVTGGALDKEDLKYMERAFELNDKVAKDIMTDRTRLTVLD ATDTVKTALKLYLDEGFSRFPVVRDNDKDDVVGYVYAYDIVEQSNEGNNASLSRLIRAII TVPESMPIQDILQLMIQKHTPIVLVVDEYGGTSGIVTDKDIYEELFGSIKDEIDDVSDEY IIRDKDGKVRVSGKTTLYDFERFYHKKLKAFQDSDIITIGGYMMEHYPDLKKVIV >gi|313656766|gb|GL545251.1| GENE 854 828908 - 829564 641 218 aa, chain - ## HITS:1 COG:CC0324 KEGG:ns NR:ns ## COG: CC0324 COG0778 # Protein_GI_number: 16124579 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Caulobacter vibrioides # 1 212 1 213 220 89 29.0 7e-18 MDFEEVFNKERATRKFSTRKVDDELIKEIIKKAQQSPSLLNSQPWRAYAITGGALLKLKR ENKAYIARKVPVSEDFSTMLSIDWSTFPSQNMSNMGAFVTYFLHNKTELFENANNNMFYA PAIIFLTIPKKSPAWSVFDLGIFAQSIMLLAINRGLDTMPAHSLVAYPDLIRKYTNIPDD EAIGMAIAIGYADKAAEVNSPTYIPGRVPFDKIFKLIK >gi|313656766|gb|GL545251.1| GENE 855 829689 - 832058 2965 789 aa, chain - ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 7 785 15 794 796 945 57.0 0 MTVNFDSQDYLRSVDAYWRAANYLSVGQLFLMKNPLLKTELKAEDVKPKPIGHWGTIVPQ NFIYAHLNRVIKKYNLNMFYIEGSGHGGQVMVSNSYLDGSYTERYPEITQDEAGMTRLFK RFSFPGGVASHAAPETPGSIHEGGELGYSLSHGVGAILDNPDVIAAVEIGDGESETGPLA ASWFSDKFINPIHDGAVLPILQINGFKISNPTIVSRMSDADLTKYFEGMGWKPYFVNVHG LSHMDAHELMAKTMDKAVEDILAIQKHARETGDDSMPQWPMMVLRAPKGWTGPKFDLDGN PIENSFRAHQIPIPVDQKHMEHKDMLIDWMKSYKPEELFNEDGSPKDIVLENTVQGDQRM AMNPVTNGGINPKRLHLPDWRNYAIDFDKPGSVEKQDMAEWSKYLNEIANLNPTNFRGFG PDESKSNRLFTILDGQKRQWMEDIKEPNDEDLARSGRMIDSQLSEHQAEGWLEGYVLTGR HGFFATYEAFGRVVDSMLTQHMKWLRKAKEQYWRHDYPALNIVDTSTVFQQDHNGYTHQD PGLLTHLFEKNRPDLIHEYLPADTNSLLAVSNKAFADRECINVLVTSKQPRPQWFSKEEA QRLVENGLSYIDWASTDDHEEPDVVFASTGTEPTLETLAAIDLLHKNFPDLKIRYINVLD VMKLQSQRKNPNGLSDEEFDRLFTKNKPVIFAWHGFKPMMESIWFDRHNHNVSIHGYEEN GDITTPFDMRVLNEIDRFHLAKDAVERLDLPAAGFVDEMDKLLSKHHTYIRDNGKDIPEV TEWEWKGLN >gi|313656766|gb|GL545251.1| GENE 856 832197 - 832922 661 241 aa, chain - ## HITS:1 COG:SP2020 KEGG:ns NR:ns ## COG: SP2020 COG2188 # Protein_GI_number: 15901841 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 236 5 236 242 128 33.0 1e-29 MTDFVYRAVMRDIKQNILAQKYEDMRLPDERSLASHYQVSRSSMKRALELLAQQGIIFKK RGSGTFINPLYLKNQALFRYEGSNLGLTDSFKVPGKKQQIKLLEFKVINASKELAQDLFI NEADFVYQFKRLRLLDNQPFLIETGYLPIKIVPELTPEILKDSLFNYLEDTQNKTVTRSF LNITVEPSNSEDQSELDLQTNEPVGVMEGIFFLDDGTPFEVSNMRIHYKYMRYNSFVNLN Q >gi|313656766|gb|GL545251.1| GENE 857 832938 - 833861 1095 307 aa, chain - ## HITS:1 COG:ECs0033 KEGG:ns NR:ns ## COG: ECs0033 COG1957 # Protein_GI_number: 15829287 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli O157:H7 # 5 302 4 300 304 241 42.0 1e-63 MNKKPLIISTDPGIDDAVALTIALFAKELDVKLIAATWGNVSLEKTLNNALKLETFLGTK VPVVSGAKLPLVKKPIDASEVHGKSGMDGFDFPEPDKGLLVSGLAATKIHEVVANSPEKV TLMQIGPATDFALYFRQYPDDLEKIEELVIMGGAIGRGNYGPYDEYNVSGDPEAAKIVFE SGVKIRVAPLELGHQAFVKQDTMDVVKNYGKTGEMLYSILSNLHDGTLSDGLEIYDALAV GMLLAPEMYTFKPAFVAIDTNDSYTYGASVMDFDNFFGKPVNAEIGVSINREQFVDWFAK VLKEADK >gi|313656766|gb|GL545251.1| GENE 858 833953 - 834645 770 230 aa, chain - ## HITS:1 COG:SPy0889 KEGG:ns NR:ns ## COG: SPy0889 COG0120 # Protein_GI_number: 15674914 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Streptococcus pyogenes M1 GAS # 7 223 2 217 227 194 49.0 1e-49 MDKNMQDELKKEAAKVAADKVQAGSVLGVGTGSTVKFFIDWLGERKEKEGLTLKHIVTTS SRSKKQLESYGFKVDELADVDEVDLTVDGADRVDSQLNGIKGGGAALTLEKNVAVNSKKN IWIVDESKVVDHLSGFKLPVEVLPVSCMQVKKRLEKEGLNPEFRMDGNKKLTTHYGNYIL DLNISPIPVPNGLADYLDHTVGVVEHGLFLGICDEVIVAKSNGTIQEIKR >gi|313656766|gb|GL545251.1| GENE 859 834645 - 835568 954 307 aa, chain - ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 3 303 4 304 304 241 46.0 1e-63 MQKIVVVGSSNVDTTLHVVDFPKPGETINALDITEAGGGKGANQAIAAAKAGSETYFINR VGEDSSGRFILKQLKCYGVDTTYVQTTSGTNTGHAYINLNEAGQNNIIIDHGANYELSVE DIDAAEELIKDSDAIITQFETPIEVAIEAFKIAKKNNVITILNPAPAIKELPKELLKLTD LIAPNETESSLITGIEVKDLESIKANSDKLHELGVKNVVITYGDKGSYISTANVEKLIPA FKVEAADTTGAGDTFIGFLTSQLQADFSNIEQAATFAARASSIAVSRLGAQPSIPTYNEV NELMGRE >gi|313656766|gb|GL545251.1| GENE 860 835636 - 836442 808 268 aa, chain - ## HITS:1 COG:L51063 KEGG:ns NR:ns ## COG: L51063 COG1085 # Protein_GI_number: 15672818 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Lactococcus lactis # 2 251 5 247 261 225 44.0 6e-59 MNDEPLVYMYSVGKRKPYDYDYANRQSNTQNPCPFCNPQTLTDIYETDGDKIWLHNKYPT LKDTMQTILIESSDHQGDISTYTREENRELMKFGLKCFQKMYNSGDYQSVLWYKNFGPKS DGSLQHPHMQIVGLDKMDGYKNIQENNFTGFEVGKSGDVEMNLSKRPVQGYQEVNVVTWH NQDLDIWADLIQKSTQYVRSVLSHGVDSYNLFFYPIKNGKGTCCKVIPRFYAPPYFVGYK LSQVDDDETLEWEAARLKGFITSGISLT >gi|313656766|gb|GL545251.1| GENE 861 836667 - 837962 1483 431 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 42 381 19 365 419 155 30.0 2e-37 MKFKNKVALAAMLGVSLLATACSTGSKTPTSSSTIPTKVTKKTTITFWYSLTGTSKATLE NLTKEFEKKNPNIKVQLQSQGGNLGDLQSKLVSSLQSPKNLPTITQAYPGWLYSAAQNKM LVNLTPYVNNKEIGWGSYSNSKIKSALWDGAKINGTQYGVPFNKSVEVLFYNKTILDKYG VKVPKTMAELKKASQEIYEKSEHKVKGVGFDSLNNYYMLAMKEKGIDFTKKLNFASSESK AVINYYADGVKDGYFMMAGTEKYMSTPFSSEKVAMFVGSTANEAYVKSGLTQGNEYGIAA RPSSINVQQGTDIYMFSKATKLQRTAAFKYLKFLTSTASQATWANKTGYMPVNTDVLDSA SYKASKNSKVPAILEATTKKLYYLPITKNSESAYDQINANMQTILANAGKKKSWNSDITT GQSKLIAAWKQ >gi|313656766|gb|GL545251.1| GENE 862 838146 - 838673 656 175 aa, chain - ## HITS:1 COG:CAC3094 KEGG:ns NR:ns ## COG: CAC3094 COG1392 # Protein_GI_number: 15896345 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Clostridium acetobutylicum # 6 165 8 165 210 82 31.0 4e-16 MSRKSDQYYFDTFLKCANFAYEASQLLNEVVNDYTPDRVSNLTDKIHEIEHNADHEKHEM TEVLIKAFVTPIEREDIMELAHNIDNMVDRIEDVLMRLYCDNIQTIRPEILPICELLIQN TNEVVELIKDLPKFKKNAEFKEHIVNINTMEGKADVMFIDNMRNLHVHEKMLYKY >gi|313656766|gb|GL545251.1| GENE 863 838687 - 839736 1101 349 aa, chain - ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 29 349 20 335 335 186 33.0 6e-47 MDISLSGFLQSLANPAMLTTVVLTLGVIFVNGWTDAPNAIATTVTTRGMAAKPAIIMSAV FNFLGVLIMTQLNASVAETISNMVDFGGDAHASMIALAAALFSIVVYSVGASIFGIPTSE SHSLIAGLTGAAIAIQGSFKGINWNEWIKVLYGMVLSLVLGFALGWIICKCVILICQNMD RRKTNRFFSGAQIAGAAAMSFMHGAQDGQKFIGVLLLGMAFVNGHASAASIAIPVWLMML CSITMGVGTSVGGEKIIKSVGMDMVKLEPFQGFSSDLAGAISILISTLYGIPISTTHAKT SSIMGVGAVKRLSSINLNVVKDMVLTWIFTFPGCGLIAFLMAKLFLLVF >gi|313656766|gb|GL545251.1| GENE 864 839815 - 840477 634 220 aa, chain - ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 4 212 3 213 218 195 53.0 5e-50 MSTFINAYSPTNLRFLLEGLLVTVEVSIISIVLSYIIGLILGTIRYMKIKYISAVVGLII DIIRNLPLLLIIFFTYFGFPELGIHATPFWAAISALVIFESAMLAEIVRGGIKAVPEGQM EGARSNGMTYLQAMCHVIMPQAMHMMMPALLSQFVSLVKDTSLATIIILPELLYHAQIIY SQNTTYMIPMYLIIATMYFVVCFALSLFAQRLRKKLGKGA >gi|313656766|gb|GL545251.1| GENE 865 840491 - 841129 427 212 aa, chain - ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 2 211 3 212 216 195 51.0 4e-50 MIEILQNNWSNLLSGFGVTVMISIISLCASLVLGTVFAIMEVVPNKTVQIIAHSYIELFR NIPLLVITMIFYLIVPQYLFKISGFTAGCIGLSLYTSAFIAECIRAGINSVGEGQMEGAR SNGMTYVQAMRFVILPQAFKVAIPSLGNQFINLIKNSSVLAFVAGFDLMYQGDVIAFSSF QTVNTYLVVGCCYLVLTLPLSYYMRYLEKKIA >gi|313656766|gb|GL545251.1| GENE 866 841126 - 841953 793 275 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 9 267 7 272 273 239 50.0 6e-63 MKNFYRWIFASFSLLVLLTLSACQNKSKSSDTYEKIKTSQAITWGVKADTRLFGIMNIKT SQLEGFEIDLAKELSKKMLGKNIKVNLVQTTAKTKIPLLRNGSVDALLSTMTITKERKKI VDFSTPYFNAGQAILVPQNSKIRNVYDLNKNGITVLAVKGTTAVANIRKFAPKASVSEYD DYGQAFSALKAGQGQALTSDNGILAGIAAENPGFKIVGGTFTSEPYGIAVRKGDTKLRKK INQALAELKADGTYQKLLKKWFSGIPGFSIKEASR >gi|313656766|gb|GL545251.1| GENE 867 841963 - 842490 342 175 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 172 72 242 245 136 39 1e-42 KTDINKIRKNVGMVFQHFNLYENHTVLENIMLAPRIVLKRPEAENKEIAMKLLKRVGLEE KADLLPKQLSGGQKQRVAIARSLAMKPKVILFDEPTSALDPEMIQDVLDVMKYIAQAGIT MVVVTHEMGFAREVGSRLLFFDKGEVLEDSHNPKEFFAHPKTERAREFLSKVISH >gi|313656766|gb|GL545251.1| GENE 868 842409 - 842702 371 97 aa, chain - ## HITS:1 COG:SP0610 KEGG:ns NR:ns ## COG: SP0610 COG1126 # Protein_GI_number: 15900518 # Func_class: E Amino acid transport and metabolism # Function: ABC-type polar amino acid transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 3 86 2 86 252 96 52.0 9e-21 MGAVIEFRNVDKYYGKYHALKNINLEIDEGEIVSIIGPSGSGKSTLIRTMNGLEKINSGQ LIVTGYDLADKKQILIKLEKMLEWFFNISIYMKTILF >gi|313656766|gb|GL545251.1| GENE 869 842817 - 844079 231 420 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 197 404 147 353 398 93 29 3e-17 MALFTVLTLPLALFLALVLIKKARKYIGLQQREISNLNGFVNEQLHGQAVIITNGLQKQS VEEFKKYNQAVRSAMFKGQFYSGILFPLMNGLATLNFAIVIAGGTYLILAKQVSMPAGLG LIVMFIEYSYSYFQPLTQLSSLYNLIELALTGAKRLAKVEQEKEENRVIDGQQLAPLKYG LTLENVSLGYSKDREILHGINVTVPKGKTVAVVGPTGSGKTTIMNLVNRFYDVSAGKIAL DGTDIREFTLTSLRNNVGIVLQDSVVFSGTIFENIAFGKRDATLAEVENAAKKAQIHDYI SSLPNGYETKISENGDTFSTGQRQLISIARTLLTNPDFLILDEATSNVDTVTEEKIQVAM DEVIKNRTSFVIAHRLKTIINADKIIVLKDGSVLEQGTHQELLNLKGFYYKLYMDQMAFD >gi|313656766|gb|GL545251.1| GENE 870 844139 - 844573 308 144 aa, chain - ## HITS:1 COG:lin2895 KEGG:ns NR:ns ## COG: lin2895 COG1132 # Protein_GI_number: 16801955 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Listeria innocua # 1 142 1 147 590 106 36.0 1e-23 MRDSKLAFKYFYKYLKPHWKAIFLVSVFSLISTFFQVLAPTYLGQAVTKLTSYLTNGGSL NSFLEIVTLLAASYLLSTLAIFISWVIMSNFTAHANNSMRKSLFNKLQRMTIRYFDTHQD GKILSLFTSDLDNIFNAMNQAISN >gi|313656766|gb|GL545251.1| GENE 871 844573 - 844836 126 87 aa, chain - ## HITS:1 COG:L109162 KEGG:ns NR:ns ## COG: L109162 COG1132 # Protein_GI_number: 15672292 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Lactococcus lactis # 1 82 491 572 573 99 64.0 1e-21 MILDDSTSALDAESEKKVQDALEHKLKETTTFLIAEKIISIKNANRILVLDDGKLVAQGT HEELLKTSDIYQEILKTQQAREMRGEH >gi|313656766|gb|GL545251.1| GENE 872 845009 - 846307 891 432 aa, chain - ## HITS:1 COG:lin2894 KEGG:ns NR:ns ## COG: lin2894 COG1132 # Protein_GI_number: 16801954 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Listeria innocua # 5 424 2 421 573 328 40.0 9e-90 MSLFQILFRHLKKYLKDVCGAMVTMTLSALAVLYQPRLLEAIQKDLLKENTSKVVSDSIW IIGLGIIAIVAGILNVYFAAKLAQGVTSDLREEVYEKIQSFSYANIDTFSTGSLTTRLIS DMNQIMNLVMSIFMQLVRLPIILVGSFILAILTIPRFWWITLWVLVILTVVGLFIMKLAN QQFEQYQVRLDKVANLAQENLLGMRVVKSFNQEGEQVNKFSAASDDLNRLNLNIGYLMSA VIPAFSIIAYIAICAVTTMIGLQIKLHPTDIAVISPYVNYILTLLFAVWIIGIALMNVSR GKVSLGRIKEVLDTKPSIVFNDKAPDEVLSGDVEFNDVSFTYPGSTKPTLQHISFNVHAG EIVGIVGATGSGKSTLAQLIARLYDPSSGTIKIGGRNLKEISENPYVKVLLSFYKKQFYF LGQLLLICDKER >gi|313656766|gb|GL545251.1| GENE 873 846304 - 846762 393 152 aa, chain - ## HITS:1 COG:no KEGG:FI9785_616 NR:ns ## KEGG: FI9785_616 # Name: not_defined # Def: putative transcriptional regulator # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 12 148 6 142 145 135 51.0 4e-31 MEGLILKYVKMTEKINMAIINSGRAYQAWDMDNGLPTYLSVILYELFYHKRLSQKELVER SGIPKQSINKGIKLLQEKDYLICEYNGGDRRVKECYLTKAGLDYAKIKVGPLFDLEDEII YKMGVKRVEKLTELLEEYSHTLWELVKEDEKL >gi|313656766|gb|GL545251.1| GENE 874 846890 - 847525 747 211 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 5 208 3 205 211 241 58.0 7e-64 MTELKRPIVIGIAGGSGSGKTTIAHEVARLINDDDHIITLTQDSYYKDNTGIPMSERKKI NYDHPDAFDMPLLVAQINQLMHRKAVEMPVYDFTEHTRSSKTIHVEPADIIILEGILVLA DENLRNLMDIKVYVDTDDDIRFIRRLERDLKERGRSLDSVIDQYLATVKPMYHQFIEPTK RYADIIVPEGGENNVAIDMLTTKMRSVLAND >gi|313656766|gb|GL545251.1| GENE 875 847587 - 848546 829 319 aa, chain - ## HITS:1 COG:lin1066 KEGG:ns NR:ns ## COG: lin1066 COG0463 # Protein_GI_number: 16800135 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Listeria innocua # 1 317 1 321 329 363 53.0 1e-100 MANKVLTIVVPCYDEQEVLHETSKLLKNIIDDLIEQNKISSNSKILFVNDGSKDKTWEII EQLQSQEKVFTGIRLSRNFGHQNAVMAGLSRAVWYSDMMITIDADLQDDIQKIYEMVDKF YQGFDIVYGVRNNRDTDTGFKRTTAEAYYWLMTKMGVNLIPDHADYRLMSKRAVEALLEY HEENLFLRGIVPELGFNTTKVYYKRKERFAGESHYPLKKMLGLAIDGITSFTIAPIKLIL YLGILMVLYGGGAIVLLGVTHHMSDYRSLINSLWLLGGIQLITLSIIGTYVGKVFNDVKK RPRFIIEDDTYSDRMKKIR >gi|313656766|gb|GL545251.1| GENE 876 848563 - 850590 2094 675 aa, chain - ## HITS:1 COG:BS_yycA KEGG:ns NR:ns ## COG: BS_yycA COG1807 # Protein_GI_number: 16081101 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family # Organism: Bacillus subtilis # 7 670 78 682 685 396 40.0 1e-110 MVICVKIFGFHSWSIVLSSVLFGIGSVFLMYKLIKPYFGRLAANLGALFMTLTPIVVANS RTNNMDATLVFFLLLAGYVLHKSIQKHKPLLVLVSFALIGIAFNIKMLQAFMVLPTMYFF YFIASKQNWKKKSLWTIAATASLAVFTLAWPLAGDSTSKSSRPYIGSSTNNSVLNLAFGY NGTERLLGQSTGTGGAFPGMNSKNKGKAGNMPGGNKPSQSKNGNMKKPSGTKPSGSMKKP SGQIGQGGPGGNNQAPGKNQKIANSTKTKQPSNSMKKPSGKMGGQKPGKMGKGGPGGKGG GQGAGGGIFNVGKAGPFRIFQTALGQQVSWLLPLSLIGFVIAYFNEWRKKRKWFKFNKRQ THLLYWFGWLVPVYGFFSMAQFFHPYYMIMIAPPIAALAAIGIASFVENKTKKKKVEELA EHDSKEENLANDDVVEVEKEAKFASKVNTYLMAVAVLATAGLQAWYVYEYYSWATYLLII AGLAVAAYIVLSANKKFNKKASLSAILVTLLLAPGFWSLTPTLSGESAAIPTSGPSLLSS NNVNGSFGSGSANTKMISYLEKHNGNATYLFATMDSNTAAPYIIKTGKAVMTIGGYNGTD NAISLKKFKQLVKAGKVKYFYLTNDNGNNNAIVKWVKKYGTKVSLSKYGGNSTSSHAMSG GPGNSNGTLYKLSVK >gi|313656766|gb|GL545251.1| GENE 877 850602 - 850820 170 72 aa, chain - ## HITS:1 COG:no KEGG:LEUM_0101 NR:ns ## KEGG: LEUM_0101 # Name: not_defined # Def: glycosyltransferase # Organism: L.mesenteroides # Pathway: not_defined # 7 55 4 52 700 66 63.0 4e-10 MKQKMREKIKKIDYWLVAILILAAFLYGWNIWKAGYANQFYTAAIVSMSKSWKAFGMVVL IQLVLLRWISLL >gi|313656766|gb|GL545251.1| GENE 878 850997 - 852208 1068 403 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 7 389 4 385 402 350 46.0 3e-96 MATNTIWKKNLYILSIAVFIAGIAFSEIMPFLPLYVASLGNFSHQELNFWSGFIYSGMFI ISAITSPWWGKLADKKGRKLMILRASCGMAIAIGAMGLVTNVYQLFALRCLQGLFAGFVS NSNALIATQTPKEKAGQAMGTMASSVTAGTLLGPLIGGFLASVFSYRITFFITGFLLFVT FLMSLFWVKEDNFVVKSTNNIGKTKDVIKQFKSPNLIFGLLITTMIIQAANNSINPIVSL FVKQLLHGNGNVVLISGIIAALPGIATFTVASRFGALGDKIGTHKIIVGGFIGASILFLA TAFVQNTIELGVLRFLVGFSDACLFPQVQTMLSKNSPASVTGRVFSWNQSAMYIGNIAGP IIGTTISGLSNYNMVFIVTTFLVLFNFLLFKLNVINNLPVSQD >gi|313656766|gb|GL545251.1| GENE 879 852301 - 853740 1391 479 aa, chain + ## HITS:1 COG:SA2396 KEGG:ns NR:ns ## COG: SA2396 COG0531 # Protein_GI_number: 15928189 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 471 1 470 482 607 68.0 1e-173 MKNLFERLSLKEDPSVYEDKDSHLKRTLGVKEFLALGVGTIVSASIFTLPGVVAAKYAGP AVTISFLLAALVAGLVAFAYAEMSAAMPFAGSAYSWINVIFGEFWGWIAGWALLAEYFIA VAFVASGLSSNLQGLLSPMGFSLPTQLQAGLGSNGGLFDFFACSVILLIAILLSRGVKEA ARVQNILVVLKVLAIIIFIAVGITALHPKNYTPFVPAQKANSDGTIFGGWIGIYEGVSTI FLSYIGFDSIAANSAEAKNPQKTMPRGIMGSLLIAVVLFVGVGLVLVGMFPYSAYANNAE PVGWALRQAGHPIVAIIVQATAVVGMFTALIGMMLAGSRLVYSFGRDGMLPKWLGHLNKN KLPNHALVFLTVVSVILGALLPFSFLAQMVSAGTLIAFMFVTLGIYKLRKREGKDIKEPS FKMPFYPVLPAIAFLASLGVFLGLDTAAKLTATAWFIIGLVIYFSYGIKHSTLANSKDN >gi|313656766|gb|GL545251.1| GENE 880 853804 - 855282 1464 492 aa, chain - ## HITS:1 COG:ECs5137 KEGG:ns NR:ns ## COG: ECs5137 COG0531 # Protein_GI_number: 15834391 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 6 484 20 498 514 430 48.0 1e-120 MSDKQKKIGLFSLIMMIFSSIFGFANMPVAFLQMGYASIPWFIFAAVLFFLPVAMMIAEY GAAFKDDHGGMYTWLKESIGEKWAFIGTFIWLSSWIVWLISISSKVFIPFSALIFGKDMT QTWSFGPFNATQVIGILAILWMIFVTFAASHGAEVISKVSSIGGYFVTGMIFVFIIGSIV ALIAGHGHISQALTAKALISSPNPDFQTPIATLSFIVYAIFAYAGMEALGGIIDSVEKPE KTFPRGMLISSVLIAAGYSIIVLLWGISINWNDVLNSKSVNLGNITYVMMGHLGYYLGQT LGLSNSTSLLLQSIFIRFVGLGMFLAYVGSFFILIYSPIKSFILGSKHLWSEKMTKLNKV GVPAHAMWMQAILVCVLIFLISFGGGEAKTFYTILTDMSNVATSFPYLFLIAAFPLFKKK YKNLPFEVFKNKGFTNLIVAISFLIVLFGIIFTCVEPFLQGDWVTGFWTVIGPIFFGSLA YAIYAKAERKQK >gi|313656766|gb|GL545251.1| GENE 881 855399 - 856106 1011 235 aa, chain - ## HITS:1 COG:SPy1240 KEGG:ns NR:ns ## COG: SPy1240 COG0704 # Protein_GI_number: 15675200 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pyogenes M1 GAS # 5 216 6 217 217 161 39.0 1e-39 MGVMFDSELKKLKSRFVEMGLDTNEQLYQATKAFLDHDPVLAKKVINGDLAINDEEISLE KRALKLIALQQPLANDFRTIISILKASNDVERLGDYAVHIGRATVQLKENHHSPEIEQAI EEMSAIVREMLEKVLDAYVYTDEKAAYEVANKDLKVDIIYVREQKRLLEKMMANGESIPS YEQYVSVIRTLERAGDHIVNLAEWVIYIASGKLVELNPGKTDPELVEKGLKKSNE >gi|313656766|gb|GL545251.1| GENE 882 856124 - 856876 355 250 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 246 2 240 245 141 35 1e-31 MEKIALELKNVGVAYGDKQVVKNVSMKFPQNQISALIGASGSGKSTLLRSINRMNDDLAT VTGEIIFEDININDPKINVYRLRRQIGMVFQQPTPFPMSIYDNVVYGLRLAGEKRKDILD QRVEESLKQAALWDEVKDSLHSNGSSLSGGQQQRLCIARTLATKPEIILMDEPTSALDPI STSQIEQTMLELRKDYTIIIVTHNMQQASRSSDWTAFMHQGKLVEFNKTSEIFINPQKQQ TSDYLSGKFG >gi|313656766|gb|GL545251.1| GENE 883 856891 - 857772 913 293 aa, chain - ## HITS:1 COG:lin2640 KEGG:ns NR:ns ## COG: lin2640 COG0581 # Protein_GI_number: 16801702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 1 291 1 291 294 301 53.0 9e-82 MNAEKRDHLATILISSGAIFAGILVILFLLYLIVEGLPQLSWHFLTTASDSFSTNGGIRD QLFNSFYLVVITLIISIPLSLGAAIYLSEYAKDNVFTRALRLAIEVLSSLPSVVIGLFGY LIFVVNFKMGFSILAGALALTILNIPLLTTNAEQALRQIPYLQRQAGLGLGMTKWRVTKD IVIPAAFPSILTGVILASGRIFGEAAALIFTSGQSSIAVSYSNWNPFDPTSFLNLMRPAE TLAVNIWKLNTEGLVPNAQAISSGAVAVLILTILIFNICARLFSAYISKKLGK >gi|313656766|gb|GL545251.1| GENE 884 857776 - 858675 879 299 aa, chain - ## HITS:1 COG:SPy1244 KEGG:ns NR:ns ## COG: SPy1244 COG0573 # Protein_GI_number: 15675204 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 9 298 10 305 311 279 56.0 5e-75 MKQNKKHLLLSPSKESYEEKWGKTISYGSIALIGLVVISIIFFLTGKGLALFFKDHANVW QFLTSSNWEPSHNSFGALPMIVTSFVVTLLAGLIAAPFALIIALAINEIFPKWFGKILQP IIELLVGVPSVVYGFAGLILVTPVLRSIFGGSGFGILAAVVVLFMMILPTMVSMMVDSLR ATPKTFRTASYGLGATRWQTLHMVVIPSAKGGLLTAIVFGMTRAFGEALAVQMVIGNAAL MPQNLMSPAATLTSVLTTGMGNTIMGTSANDALWSLAFVLLVMSLVFNILIKLINKKRG >gi|313656766|gb|GL545251.1| GENE 885 858680 - 859546 768 288 aa, chain - ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 30 283 43 296 302 266 55.0 3e-71 MNKKSIFGLVFIALIAFCWWDYESHGVKQTSKVTNVGSTALQPLSESAAAGFLKKNPVIN LIVQGGGSGTGLSQVQNGTVEIGSSDVYAESKKGINAKKLTDHIVAISAIVPIVNKKLNI KNLTTNQLRDIFLGTITNWKQVGGPDLEITIINRASGSGTRAAFQELILKGKEPLKAQEQ DSNGSVKQIVKATPGAISYVSTSYIDNSIKTLTIDGIDASSKNVETNKYKLWSYEHMYTQ KNASAAAVKFIEYIQSKEVQNTLVKRAHYISIYDMKVVRDINGVVRKK >gi|313656766|gb|GL545251.1| GENE 886 859661 - 860371 469 236 aa, chain + ## HITS:1 COG:lin2644 KEGG:ns NR:ns ## COG: lin2644 COG0745 # Protein_GI_number: 16801706 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 50 233 49 230 236 106 36.0 4e-23 MTNRFLILSQNPDLTTKIEQLIKKKRENYRHLTTPTSLVVALNDENYSGIFWDITKSNLD TTLATLLLIRNQVAGPIIIFTNSHSDRTLDKLYKAKVDFVAGLEINEKLLLRIFEQRLWS YSYKIHTQEKKLTNRADEEIIETGSIKINIGKYSVFKDNEPVVLTPKEFQLLAYLAQNKG NVISREQLLQKIWGYDLLGSSRIVDIHISHLRDKLENDSTHPEHILTKRGFGYCFI >gi|313656766|gb|GL545251.1| GENE 887 860555 - 861817 1076 420 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 7 420 5 427 447 419 50 1e-115 MAQDVVLDVEEKPSFGQWIGLSMQHMFSMFGSTVLVPILVGLDPSIALFSSGVGTLLHLL ITHHKIPAYMGSSFAFITPMIALMKTAGYPAIAQGVIASGLVYLIVALIVAFAGSDWIDR ILPPIVVGPIVMVIGLSLAGTAATDATMNNSKYDLRYFAVAMLTLLVTIIFNMYFKGFWG LIPILLGIVSGYIIACLFGIVDFSKVMSASWISMPKFEIPFVSYSPKMYWGAILSMAPIA FVTMTEHMGHIMVLNELTGRDFFKDPGLKKTLAGDGAASIAAGLLGGPSVTSYGENIGVM AITRVHSVYVLMGAAVFAILFSFVGKLSALIESIPSPVIGGISFLLFGVIAASGLKVIVE RKIDFNKKRNLMIASVILVIGIGNAYLQLGDFQFSGVAVATILGIILNLVLPQEAASEKE >gi|313656766|gb|GL545251.1| GENE 888 861948 - 863213 1267 421 aa, chain + ## HITS:1 COG:BS_gltT KEGG:ns NR:ns ## COG: BS_gltT COG1301 # Protein_GI_number: 16078086 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Bacillus subtilis # 8 421 5 418 429 390 52.0 1e-108 MKHSRVPRISLGTQIIIGLVLGIIVGAATYHNQVAISTMSGLGTIFLRLIQMIVMPIVVS CLTVGIANIGDLRKLGRIGGKTLLYFEVLTTIAIILGLVVANITRPGDFINIHSLQGGDI SKYLATAKTASKTGIWDTIFAVIPTNIFKSMSEGDMMPVIFFSVFFGLGIAAIGEKGKII TQFLNAVSVVMFRVTNWVMKFAPLGVFGLIGMTIAQMGLSALLPLGYFILVAYLTMIFFC IVIFGIVAYLFKLDYWKTMKKIWPEILLAFSTASSEATLPRLMKKMQDMGVEKGVASFVI PTGYTFNLDGSAIYQSLAAIFLAQAYGLHLTWEHQFTLLVVLMITSKGMAGVPGASFVVL LASVATIGVPIAGLTFIAGIDRFVDMGRTSVNVVGNTFASLVIGESEKALNREKYEKYLN Q >gi|313656766|gb|GL545251.1| GENE 889 863261 - 864274 1058 337 aa, chain - ## HITS:1 COG:SPBC1683.02 KEGG:ns NR:ns ## COG: SPBC1683.02 COG1816 # Protein_GI_number: 19111850 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Schizosaccharomyces pombe # 1 333 1 334 339 309 46.0 4e-84 MVDLTRDFLEKMPKAELHVHIEGTLEPKLKLELAERNHVELAQKTIEEVKATLQYDNLAD FLAVYYEAMQVLQTKQDFYDLAMAYLKKAAKNNVRHVEMFFDPQAHESRGIRFETVLNGL YQATVDARALNVDAHLVMCFLRDYSRNNAQKTLEKALQHQDKILGIGLDSDEHNNPPMKF YYQFAKAGEAGFHITAHADVDQVDSIVHIKDLLEVINAERIDHGTNIVENENLVAFAAKQ KVGFTSCPLSNGFLSPDLKGNEVKYLLEQGVRVCLNSDDPAYFGGYITDNYEAEVEKYNL SADEVKALAANSFKMSWISEEQKQFYLEELDRYFEEN >gi|313656766|gb|GL545251.1| GENE 890 864452 - 865591 1677 379 aa, chain + ## HITS:1 COG:SPy2206_3 KEGG:ns NR:ns ## COG: SPy2206_3 COG0516 # Protein_GI_number: 15675939 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pyogenes M1 GAS # 100 377 8 283 286 397 78.0 1e-110 MSNWNNKFVKEGLTFDDVLLIPAESHVLPNDVDLKVQLTSSLKLNLPFISAGMDTITEHE MAIAMAQAGGLGVIHKNMTIANQANEVKLVKNTEVTSEKAAVDNDHRLLVAAAVGVTTDT FERASALIDAGANAIVIDTAHGHSAGVLRKISEIRAKFPNINLIAGNVATAAGTRALYDA GVDVVKVGIGPGSICTTRVVAGVGVPQITAIYDAANVAREYGKTIIADGGIKYSGDIVKA LAAGGNAVMLGSMFSGTHETPGQIFEKQGQKFKAYRGMGSVGAMSQAHGSSDRYFQGGVN EANKLVPEGVEACVTYKGYVKEVIFQLIGGLRAGMGYVGAPDLAALIENAQFVRITNAGL VESHPHDVQITKQAPNYQG >gi|313656766|gb|GL545251.1| GENE 891 865656 - 866975 1367 439 aa, chain + ## HITS:1 COG:PH1159 KEGG:ns NR:ns ## COG: PH1159 COG1457 # Protein_GI_number: 14590986 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Pyrococcus horikoshii # 12 378 9 350 422 137 27.0 3e-32 MNHESFQVKESERTTNSWDMFATWIGANANNGTWFVGGVLAACGFALATKILVLSSALSY IFLSLVGYIGYKTGLSTMTIARASFGERGSYLPSLVNITQFIGWTAVNTFIAAQSVSLLL KDLLNIHNETIGLTIGIIVMSILHILSVASGSKSIQLIERIGVALVFIFVIWESIAVFKA VSLNQIISWKVPNSSKMALGNAIDYVAAFNLAWVTAGADFTRFTKKKHNSTIAPFLGALT GVIWFAIIGLISTISIAITSGVYNANNSDPSTIASKLGLGIVALLVIILTSMTANAVNLL AAGSALSNIFPKIKLKHSLWIVVIAATIVTFIPMFVGSFLETFESFLDYVGMVLGPIVAI ICTDYYFVKKKNYDITQFGEKLGKYWYKSGINWKAVIVFIAGIIVFVLGKNFIVLSNTVG ITFIDMLICSLLYLSLMKN >gi|313656766|gb|GL545251.1| GENE 892 867039 - 868532 1406 497 aa, chain - ## HITS:1 COG:yjeM KEGG:ns NR:ns ## COG: yjeM COG0531 # Protein_GI_number: 16131981 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 486 15 498 514 396 43.0 1e-110 MSEKKKKITLIGLILMIFSSIYGYSNSLTAFYQMGYSSIIWYVLTAVLFFLPSALMFAEY GASFKAAKGGIFSWLRGSIGEKPAFVGTFIWLAAWVIWLVSSTQFFLVSVATAIFGRDTT TSWHLFGLSSDQTLGILEIIFLVIVCAIASKGINGIVKISSVCGVATLGISVVFIVVSLI ILLMQHGQLAEPLTAASLVKSPNSSFTSPFAVVSFIVYALFAYGGLETMAGVIDNVDKPE KTFPRGLIWAMIMMTVLYILTIFLCGVTANWSEILGQKNVNLANVEYVLINNMGLVFGKA FGLGHAQALVLGKVFSQITAISDVLGGLGAAFVMLYSPIKSFIEGCDQRLLPKRLTTLNK YDMPEFAMWCEVAFVSLIILFVSFGGNSASAFYTVLTDMMNVSSAAPYLFLIGAFPFFKM KKDLDRPFVFYRSQKWVWIVTTIVWIVIAAGIIFTIIEPIVEGDPATAFWTAFGPVFFGI VAWIFYSRAEKKIKDLN >gi|313656766|gb|GL545251.1| GENE 893 868652 - 869221 563 189 aa, chain - ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 8 184 5 179 186 95 35.0 4e-20 MFKKKSNWDIQAIILVSLIGLIMGVIYTYGFNLIYNLAKAVLLPTGYAQLTDTLMSGLWY MAAPLVIYFVPAKGSATLGETLAALGEMLVGGQWGVITILAGFVQGFGNEIGFLTAKSRK NFSWVAVLLGATGAHFTGFFLTYTLYGWYKYNLNLQILMFFTGWVSSLFFDGILVKLICN RFEKAFFKK >gi|313656766|gb|GL545251.1| GENE 894 869796 - 870860 909 354 aa, chain + ## HITS:1 COG:YPO2459 KEGG:ns NR:ns ## COG: YPO2459 COG0477 # Protein_GI_number: 16122680 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 6 338 96 428 452 155 34.0 1e-37 MANMYIYTILSILQFFTSNLLLLFILRVGIGLMIAIDYTVGNSILVEWLPTKDGAKRQSN LLLYWAYGFGLSFLASQFISNWRLMLCSSAVLGLIAAIYRSVVQIPHSPSWLASHGEHRQ AQKVIQKNLGKKWGLPKNLLRIRKKSDASTAELFGKKYWKSTLTGTAFYATQAFAFFGIS IFLPILLKNMHMNNAFLSGLLYNSAIIVGTAIGIWLFNKMSRRSFLILTFTIPIICLFIL ALLPKLPSVLTLLVFTVFSIVLSASLLLDFTYTTELFDLRIRATGVGFVIMMSRVGAAAG TFLLPIIVNLAGAYVTLCVCGVILLIGTIICLFTAPETNPKFVKQGNKTIKPIT >gi|313656766|gb|GL545251.1| GENE 895 870957 - 872252 1152 431 aa, chain + ## HITS:1 COG:YPO2459 KEGG:ns NR:ns ## COG: YPO2459 COG0477 # Protein_GI_number: 16122680 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 9 423 13 428 452 184 31.0 3e-46 MTQTKNYKDAPFSKVHSQIYWAMNIGQIACAYALNVAGIAFGNGQHQLGINNFLLGLLGA ASLIGLIGSFFMGQLADRFGRKHILMSNMYIFTILSLLQYFTTNVWLLLVLRLLIGLMIA VDYTVGNALMVEWLPTKDAAAKQSHLLFYWTLGLLIAYVTGHYVSDWRLLLASSAVFGLI AALNRSFIRLPASPSWLASHNQNESATELIQERLGKEWGLPKHLVELEEDPSINWMTLFS KDYWRQTLAGTAFYATQSFAFFGINIFLPILLKSMDVTDTYLAGLFYNIATVAGPAIGIY FFNIYRRRSFLIVTFSISSLCLFILAFGKSINSIIEITIFTLLAVILTASVLLDFPYTSE LFDIKLRGTGVGFVIAMSRIGAALGTFLLPVVVSAYGSYVTMAICGVVLLLGTVICYFVA PETNPRYVNKD >gi|313656766|gb|GL545251.1| GENE 896 872287 - 874254 1864 655 aa, chain - ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 290 1 290 290 368 65.0 1e-101 MAFLELKNIYKSYFLGKEEFPVLKGINLDFELGDFVSILGESGGGKSTLMNIIGGLDWAF KGEVVLAGQRLNHSKETSLNKYRRETVGYIYQSYNLIPHLNVLDNVSLALDMTTLSVNER KQRAFDLLKQVGLEDHVKKYPKQLSGGQKQRVAIARALANDPQVIIADEPTGALDSQNTE EVLTLLNQIAAEGRLVIAVTHSQHVADSGTRIVRLADGKIISDERLKPAYKAKVQRKLHS KKLPLLTSVRNAFKHFKYHFKRNLLIIIGTAVGLFSVITFNGLGTGVKGYVNQQVNSLVN PKQVLVTPYVKSNNKQQDTYVNLATRDKKISAFSKKDINTLKRVKDVTKVEKIYTLSNVA ISFNKKDTNISTVTNWTSILNTSSIKKGRMPKTGEIVIDKKDVAKSLTNQPNSLIGKKIT LTYTGLNKLGQKAVATVKVKVVGLTESSGTSQINAVGGSTIVDALKAVNMSTNVAALGVS AKSMNAAKSVAKRINEAKVNRKLRFTATAVSSILDRIETYISLITNVLAGIAGISLLVSA LMIIVTMYMSVSDRTKEIGILRALGESKGDIRRLFTSESILLGIFSATFATIIALIVQTL ANSALSKIAHYSFIQISAGNIISAFVISIIISLLAAILPARHAASLNPIDALAGE >gi|313656766|gb|GL545251.1| GENE 897 874365 - 874970 446 201 aa, chain + ## HITS:1 COG:lin1827 KEGG:ns NR:ns ## COG: lin1827 COG1309 # Protein_GI_number: 16800894 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 16 196 5 190 191 61 29.0 1e-09 MILFDVRKVVFKIRRERKKELNRQKIIAAAKKLFLRKGISATNVRDISTVSGISYVTMYK YFYDKNDLIQIVCREVIDEVINYAYSQLNNENLTFFEKLHRLSFKETFEKIYGTTAFIDF SNYINSDKKLAVYINQRINNSWIKIVEAGRQDGFIHASASDEQICKFLSLIFKLDHNEVK KNINEYGELFLYGLAGHNKNK >gi|313656766|gb|GL545251.1| GENE 898 875093 - 875848 714 251 aa, chain + ## HITS:1 COG:CAC3325 KEGG:ns NR:ns ## COG: CAC3325 COG0834 # Protein_GI_number: 15896568 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Clostridium acetobutylicum # 2 250 14 269 269 164 41.0 1e-40 MIAISVGLVACSNQKSSSSEVLHKGTLTVGLEGTYAPYAYRENGKLTGFEVDLAKAVAKK AGYKIKFVPTKWDSLIAGLGAKKFDIVINDIAMTPERKKAYAFSTPYIYSKSALIMKKTN NTIKSAKDIKGLKIAAATGTANADNVKKFGGQNVSSTDFSTAMELIRQNRVVAAMNSKEA FLYYQKSQHVTDLKYMEVPSSQIAAQEIGIMMAKGNSSLQKKINKALNTLKEDGTLSQLS KKYFDGDITKK >gi|313656766|gb|GL545251.1| GENE 899 876011 - 876790 590 259 aa, chain + ## HITS:1 COG:CAC3325 KEGG:ns NR:ns ## COG: CAC3325 COG0834 # Protein_GI_number: 15896568 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Clostridium acetobutylicum # 3 255 11 269 269 154 37.0 2e-37 MTVLLMLLSVGVVACSNQKNAKSDTLTKNTLIVGLNPSGYGPFSHLENGKLTGFEVEMAK ALTKKMGYKIKFVPTKWDSLIAGLGAKKFDVVINDIAVTPERKKAYAFSTPYLYSRSVLI MRSDNSKIKKITDIRGEKVAAATGTANADLVRKFGGENISSPDFSTAMELVRQKRVTSAM NSKESFLYFKKTQKVSDLKYLQASDTDIPTQPVAIMLNKDNSNLQTKINNALKSLRKDGT LTKLSKKYFAADITKNRKD >gi|313656766|gb|GL545251.1| GENE 900 876793 - 877470 508 225 aa, chain + ## HITS:1 COG:mll3859 KEGG:ns NR:ns ## COG: mll3859 COG0765 # Protein_GI_number: 13473305 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Mesorhizobium loti # 3 222 6 215 226 192 49.0 4e-49 MWEIIKTSVPEILIAGLKYTIPIAIISFILGIIIASITALIRMSTPKGNPLKKGFWHFLK AFFTFYVWLFRSTPLLVQLFIVFYGLPSIGIQLGAWTAGILTFSLNTGAYASETIRASIL AVPQDQWEAAYSIGLPYHKVLSRVIFPQAIRIAIPPLSNSFIGLVKDTSLASSITLVEMF MVSQEIASHNYQPMLMYSIVAIIYAIFCSLLSLLQLYLEKRFEVK >gi|313656766|gb|GL545251.1| GENE 901 877470 - 878204 540 244 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 240 1 240 245 212 43 4e-53 MLKLTHLNKSYENHKVLDDINVVFPKNKTTVILGPSGAGKSTLLRSINLLDQPESGSIEL DNLKLNYESNLSNSEILQLRRKSAMVFQSWSLFPHMTIMENIIEGPTQAKNENKEQAIEE GKKLLAEVGLAGFENRYPSELSGGQQQRVSIARALALKPSYILFDEPTSALDPELEAQIL HLIQKLAMEDKSMIVVTHNMDFARKVADKVIFLENGQVIFDGESKEFFENKNRRIQDFLN AMKF >gi|313656766|gb|GL545251.1| GENE 902 878273 - 878779 290 168 aa, chain + ## HITS:1 COG:FN0786 KEGG:ns NR:ns ## COG: FN0786 COG2963 # Protein_GI_number: 19704121 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 167 1 169 169 89 42.0 2e-18 MTKLSKQDKIDIYNKWKYYGISCNQLAKEYNIKNNSNISYLVRLIDKYSLRVLEVPYTKY SVEFKEAAIKRALSGKELVDLISLDLALPNSGMLHNWIRKYKEDGYNVINHKKGKPSSNG QERSNNSQASRTTSQAKKENLKLTIQIEYIKKLDALVAEKLKNQKPKN >gi|313656766|gb|GL545251.1| GENE 903 879053 - 879670 373 205 aa, chain + ## HITS:1 COG:FN1447 KEGG:ns NR:ns ## COG: FN1447 COG2801 # Protein_GI_number: 19704779 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 201 5 204 207 206 55.0 2e-53 MTKMHLFGLTLKRRAKYSSYRGTKGPIKPNLINRNFYSILPDRKWYSDITEFHLDGEKLY LSPIIDGCTQEIISYTISRHPVLKQVMDMLEDSYQKHPALNGLIFHTDQGWQYQHKTFQS WLENHGVIQSMSRKGNSLDDGLMEGFFGILKREMFYGFEKNFKNLDELEQAIRDYIEYYN HKRIKTVLKNHTPKEYRSMVLKKAI >gi|313656766|gb|GL545251.1| GENE 904 879713 - 880345 588 210 aa, chain - ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 3 210 4 211 211 219 50.0 2e-57 MDYTAVGVKFVIGILCLILQINLFVKKNLAPSSPIDQIQNFVLGGIIGGIIYNESITIIQ FLIILLIWTLIVFIIYVLKSRLRWARILIDGQPFNIIKNGQIQVKTCVKNGITANEIMMR LRANGINDTSQVKSAFVDANGQFVVIENNESNVKFPVINDGQINHDVLDLIHKDEDWLNE QLHQKGINNAMDVYLAEYIRGRLRIVNYPK >gi|313656766|gb|GL545251.1| GENE 905 880432 - 880797 135 121 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_08955 NR:ns ## KEGG: LAC30SC_08955 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 96 1 96 149 63 34.0 4e-09 MDFYSLDYIQNQESFNSSLIMGSIIISVILLIWAVIFYFRHNYDIKYRDIALIFGLFISI QVFRQVENYNQSKQQGNKTSQMAPFIKSVAREKMLKLRMYMLILLNLLMELLLRLKESFI A >gi|313656766|gb|GL545251.1| GENE 906 880989 - 881381 319 130 aa, chain - ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 128 1 125 172 72 38.0 1e-13 MSLKIIPVKKSERALHYLVNLSCEAFEATFSPYYDKGEIDAYLDLAYNPAILRDELSSDS SRFYFIEVDGEKAGYFKVNWDESVTNKNYIGDFELQRLYLLPKYQKQGLGQKAMDVVLNL AQELKNKKYG >gi|313656766|gb|GL545251.1| GENE 907 881561 - 882043 501 160 aa, chain - ## HITS:1 COG:SP2234 KEGG:ns NR:ns ## COG: SP2234 COG1309 # Protein_GI_number: 15902037 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 7 160 8 164 180 81 31.0 7e-16 MTDARVVKTKQKLYRAMGELLEKKSFDEITVIDLAQQAHTTRKTFYSHYQDKIELIEEYE NQIFIKLSELQAGYKFMDKAYITTYFRHIGNQDLLLKGLLSYNGSLEMQNLFKEGMYQEA QKLLALKIRDKTKLNYAALIFANGLFGVTQYWLMNGKKKA >gi|313656766|gb|GL545251.1| GENE 908 882290 - 882622 334 110 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 102 1 102 391 101 43.0 3e-22 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDRYGYKALF >gi|313656766|gb|GL545251.1| GENE 909 882600 - 883472 823 290 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 290 103 391 391 277 46.0 2e-74 MVIKLYSKGVTTREIANLIEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYL DTTYIPLRRETFEREAVYIAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQV ELFLSDGVVGMKAALAKTYPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANK AAAVDVLHAFYAKWNKSYNRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIK RKAKPKAEFPTEQSLDTFIGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 910 883551 - 884210 566 219 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260664286|ref|ZP_05865139.1| ## NR: gi|260664286|ref|ZP_05865139.1| predicted protein [Lactobacillus jensenii SJ-7A-US] putative oxidoreductase, Gfo/Idh/MocA family [Lactobacillus jensenii 1153] putative oxidoreductase, Gfo/Idh/MocA family [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] # 1 219 7 225 225 370 100.0 1e-101 MKKAKIKLDKTWIIGLLAIVFVLIIGVTYILVSNDIPSTSSKNLQTTKVSSNPKKELPLA NDNGEKHHLLINVDSNIKKVTPANVDSLVNKNNTDMKTLNCYQFGVCVLDFISNNVHNPN YLKLWKTALKTKQVEVSLVTDANNVPAFVNKGTIYKVKVNNDEVYYSLDKKNNVHYFDSS DRASLIEIGSIKLRQILLAVNQPQNQSKVKQVIKYVDVK >gi|313656766|gb|GL545251.1| GENE 911 884328 - 884567 172 79 aa, chain - ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 1 79 210 289 289 83 55.0 9e-17 MKSLYPKGVSILNIYGNLNDGSNSDGIVSNVSSRSLKYLLAPHANSYTEKEILGKMGQHS KLHENEQVDQVLIKFLWNR >gi|313656766|gb|GL545251.1| GENE 912 884680 - 885000 328 106 aa, chain - ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 1 99 64 162 289 73 37.0 8e-14 MVNAAKKAGVTKDVLTVIVDKNGVAHIQNAISKQAKNPIVKVGYLDNENTDYHTDAKYAY AAIMAVQKQYHYKKMNLVGHSMGNMSIMYLLMDYGKEKACLSWKNR >gi|313656766|gb|GL545251.1| GENE 913 884994 - 885185 141 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260664287|ref|ZP_05865140.1| ## NR: gi|260664287|ref|ZP_05865140.1| cell surface hydrolase [Lactobacillus jensenii SJ-7A-US] cell surface hydrolase [Lactobacillus jensenii SJ-7A-US] # 1 50 1 50 286 102 100.0 7e-21 MKNILKILACIFACFTLTACAAVKKASKNKANVPVQTIKQADKGTVTFFFMVGVQALMLK SRW >gi|313656766|gb|GL545251.1| GENE 914 885241 - 886578 1262 445 aa, chain - ## HITS:1 COG:lin1665 KEGG:ns NR:ns ## COG: lin1665 COG2244 # Protein_GI_number: 16800733 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 1 438 92 536 537 257 33.0 4e-68 MIGFGIVCAGLMFGLAPILAGQDARQVPVLKSLSYAILIIPLMSLMRGYFQGFNDMMPSA LSQFIEQLARVAWMLMTAYVIMKIQDGNYLRAVTQSNLAAAIGAMFGILLLVYYYQKQKA KMDNLVENSNNELQVSTNSLLLEIVQQSIPFIIIDSGINIFQLVDQYTFHPIMASFVHAS FDQIESMYALFGLNANKLIMIIVSLSTAMAVTAIPLLSGAKARRDYQDIRKQIENTLELF FFFMIPSAFGMAAISTPIYTIFYSFDPVGSNVLFIASFTAIILGLFTVLMAVQQGLSENI LAIKYLVVGLIVKCIIQYPLIRLFQVNGPLIATDLAFLFTILLSLKHLKVAFHFNFKRTK RRFIGIMSFSAIMFIVIFALQFILGKFIPADRRITAMILVAICVVVGALVYGFLALISGL AHSILGSKISKLERKLHINYYNPKH >gi|313656766|gb|GL545251.1| GENE 915 886626 - 886883 298 85 aa, chain - ## HITS:1 COG:L52064 KEGG:ns NR:ns ## COG: L52064 COG2244 # Protein_GI_number: 15673787 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Lactococcus lactis # 10 80 21 91 557 86 52.0 9e-18 MEIKYRNKDSQAQLLKGSAWMTAGSILSRILGALYIIPWYAWMGKDGNLANAITAQSYNI YSLFIIVSTAGIPGAVAKQLLSIML >gi|313656766|gb|GL545251.1| GENE 916 886973 - 889387 3319 804 aa, chain - ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 2 803 3 802 803 1154 67.0 0 MYNHKVVEKKWQKYWTEHNTFKTGTDPKKKNYYALDMFPFPSGKGLHVGHPEGYTATDIV SRMKRAQGYNVLHPMGWDAFGLPTEQYALKTGQDPAIVTDENIANFKKQLNMLGFSYDWD REVRTSDPNFYKWTQWVFEQMYKMGLAYEAEVPVNWSPDLGTVVANEEIVDGKTERGGYP VYRRNMRQWMLKMTAYADRLLEDLDDLDWPEPVKEMQRNWIGRSEGAQVRFKIKDSDKSF EVYTTRPDTLYGVCYTVLAPENPLVKEITTPEQKAAVEAYIKEVESKSDLERTDLNKDKS GVFTGAFAINPVNGEEVPVWIGDYVLASYGTGAVMAVPAHDQRDYEFAKKHDLPMKRVIE GGDLDKEAFVDDGVHVNSDILDGLNIADAKKKIIAYLEEHNFGEAKVNYKLRDWDFSRQR YWGEPIPVIHWEDGETTLVPEDELPLVLPHATDIKPSGTPESPLANLTDWVNVVDENGRK GKRETNTMPNWAGSSWYYLRYIDPHNNEKLGDYELFKKWLPVDLYIGGAEHAVRHLLYAR FWHKVLYDLGVVPTKEPFQKLYNQGLILKDHDKMSKSKGNVVNPDEVIEEYGADSLRTYE MFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLDPIVSDKVVKENDGSLDKVYNQT VKKVTEDFENLHFNTAISQMMVFVNEAQKAKTIPMEYAEGFVKLLAPVAPHMMEEIWQVL GHDESISYAEWPKFDPAKLVESTVEIMVQVNGKLRGKFTANKDAAKDELEKAAMADHHVQ KFLEGKDVKKVIVIPNKIVNIVAK >gi|313656766|gb|GL545251.1| GENE 917 889659 - 890312 372 217 aa, chain + ## HITS:1 COG:XF2574 KEGG:ns NR:ns ## COG: XF2574 COG0671 # Protein_GI_number: 15839163 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Xylella fastidiosa 9a5c # 74 208 86 218 227 77 35.0 2e-14 MNIYERKNYLTCFSILAIISSAFYAFWAFSVAYQASFIKGFDKLFINLIANQNKTELFIL KHLTVLANTPVVIGYTVVLVIFLLLKRKYALAGFSTFVMALANGNNWLLKHIVQRPRPAV SHLVKATGYSFPSGHSAGSMSICLVLFVVVLILMNKGLLKRLLLIILPIIPFIIGMSRIY VHVHYPSDVLGGFIEAITYFLLGLLIFQSKLFKNNDK >gi|313656766|gb|GL545251.1| GENE 918 890364 - 891575 1585 403 aa, chain - ## HITS:1 COG:lin2488 KEGG:ns NR:ns ## COG: lin2488 COG1252 # Protein_GI_number: 16801550 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Listeria innocua # 4 402 6 402 403 273 38.0 4e-73 MKNIVVLGAGYAGLKTVVALQKKLKNEVHITLVDRNPYHYETMRLYEVASGAYPYTRMSY ELADVLNPKMTDLIVDEVEKVNIHEKTVDLKNHGAIAYDYCVLGLGFVLSDMGVRGAKEN ALPMSNVKEAEAIRDHIYAEMKAYKQDRDIKHLSIVICGAGFQAIELAGALAEARPRLAK MAEAKPEDIRIQMIDASPRLLPMFQGKLLDYALGLLDKNKIEIIKPAFVQEVTNDSVIYK MKDDDQAKEIKAGIRIWMTGFSGSPVIDKSWFKNRRGRVMVTDHLTAPESDDIYVLGDVS SVMVPGKKWPWPNTAQMALSMANYAAKDIQSRVNQQARPAKYEYHDLGVVVAIGETQAAG KALGVGYKGYLASALKKIIIDKSLMETGGLKETFSVGRFDLYH >gi|313656766|gb|GL545251.1| GENE 919 891594 - 892493 732 299 aa, chain - ## HITS:1 COG:L187450 KEGG:ns NR:ns ## COG: L187450 COG1575 # Protein_GI_number: 15672164 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 295 1 296 301 250 49.0 2e-66 MSVATFLELVEIKAKSASVLPFILGLSYSIYYYHSINWLVSIAFFVAMFMFNMVVDMLDN YNDYYHADSQVYQQKTNIIGRENISPKLVRNLIIVFTVISALIGLWLVYKTGLAVLWMGV FCFFIGYAYSSGPLPISSLPFGELASGFTMGFMIVLLSVYLNSYQVFNWSLLTLAKIFLL ALPDELWISNLMLANNICDAQEDEDNHRKTIIHFIGKKWALKFFVIKNILALLVVLILPW LKLAPMTVMLTILIAPIIYKQTRIFLAEQVKTKTFICAVKILLMGSLIYALTYLIGALI >gi|313656766|gb|GL545251.1| GENE 920 892647 - 893543 1051 298 aa, chain + ## HITS:1 COG:L186258 KEGG:ns NR:ns ## COG: L186258 COG0142 # Protein_GI_number: 15672163 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Lactococcus lactis # 5 298 30 326 326 200 39.0 2e-51 MHAPNKNLESALKEMADNGGKYLRPSLVLLAAHAVGKTNKQIIQIATAIETLHMATLIHD DVIDDSDKRRGKPSIQFAFGKDVAVYAGDLLFTNFFDLMLDVNEPEYLRLNAQTMRQILN GELGQMNQRFNLEQTFDDYLADIKGKTATLFRLAAEEGAHFAGGNLEQTQILANFAEDLG IAFQIIDDILDYRGSSQLNKPMLEDLPTGVYSLPLLLTLKQPDLKAQLLPLLNKRTAMTV KDIKQIQAIVIDSGAITESKQLAQNYAQKGIAELAKLAPNPAVKILEKMAKELLQRTF >gi|313656766|gb|GL545251.1| GENE 921 893548 - 895284 1513 578 aa, chain - ## HITS:1 COG:L112352 KEGG:ns NR:ns ## COG: L112352 COG4987 # Protein_GI_number: 15672689 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components # Organism: Lactococcus lactis # 16 577 12 571 573 459 43.0 1e-129 MFNKIPIIQALKEDRWVKPFLKRYKKTLVLAISLGILTFVCAAGLMFCAGFLISKSATKP ENILLVYVPIVLTRAFGIGRPALQYLERLASHNWVFQMTSKFRQNLYDALEVDATKFNSK YQLGDILGLLSDDVSHIQNLYLRSIFPMFVAWGLYAIIVVALGFLTPLMGLWMLLVFGIM IFAIPIWSIIVNGSKQSFEKEARDRLYVDLTDNVMGVSDWVLSGRSQEFLKLHVDNQAKM VEVQQQIKSFERKRNFIVQMFYLLVIVSLIIWGAGKFAHATNWIAAFVLAVFPLNEAIAG LPAAGQETNVYEKSLRRLNKLKTEKITNNEKIQIEAPYNLLLKDVHYTYPKTDKEVLSGI NLKIVAGEKIAILGQSGAGKSTLASLLRGDRLPSQGSISLNGIPTAKFGDQIANYFSVIN QKPYLFNTTIANNLRLGNETASDEQIWDALDRVGLLEMVKKLPQKLDTKVDEAGLRFSGG ERHRLALARILLQDAPIVLLDEPTVGLDSVTEQAVIDTFNQQLVGKTMIWITHHLQGIDK MDQVLFIEHGQIVIQGSPNELWENSSRFRELKKADQGL >gi|313656766|gb|GL545251.1| GENE 922 895277 - 896992 203 571 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 330 547 2 222 245 82 29 5e-14 MIDQHLFKLAGAGSILKKLAVLEVLQAFLIIGQALSLSAVLTTLWQGKKLNWQYLLIFIV CLTGRQLIDLLKDKMLETYSSQEVEKLRQQLLNKIFKSGQSLVQSQGTGSLITMALYGID EVRDYIKLIYTKVLAMMIIPILLFIAMLFINWQSALGLLLMYPLIVLFMIILGYAAKDRA SKQFGDFQKLSNNFIDSLRGIDTLKYLGLSKRYSKSIFRVSEDFRHKTMAVLKVAMLSTF ALDFFTTLSIAVVAVYLGFGLLNGQLPLYPALSILILAPEYFLPIRNFASDYHATLNGKN AFKRINELISRPMQASADLAIEPWNSKSELKLENLEFNYNNQTEIGPVSVEIKGYEKVGI IGMSGSGKSTLINLLSGFLPPKSGKIIIDGQKAATLNIPAWHQQMLYIPQNPYVFTASLR ENIAFYTPEASDAEIMKAIHVVSLDELVSELPEGLDTIIGQGKRVLSGGQAQRIALARAF LDKTRKVMLFDEPTAHLDIETEVDLKKQMLPLMENRLVIFATHRLHWLKEMDYILVMHEG KLVQQGTFDELTKEAGYFTKLTQEMRGTKNV >gi|313656766|gb|GL545251.1| GENE 923 896994 - 898010 988 338 aa, chain - ## HITS:1 COG:L109201 KEGG:ns NR:ns ## COG: L109201 COG1294 # Protein_GI_number: 15672687 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Lactococcus lactis # 1 330 1 330 331 328 58.0 1e-89 MSVLQILWFILIGVLFSGFFFLDGFDYGVGMAVKTLAHNDEERGQVIQTIGPVWDGNEVW LITAGGAMFASFPYWYASLFSGYYLILLLILVGLIIRGVSFEFRAQSSQPNKRIWDNALA LGSFIAPFFLGVMFVSMIKGMPIDAKGNMSASFFDYFNWFSVVGGIALTLLTYLHGLNYI VLRTKGVICDRARNYAQALYWVLYAGEVVFALLLLFQTDFIKVHPILTLICLVLIVAFSV AGHVSVFSNHQGYAFTFSGLTLISLVALIFCGLFPRLMISSISSNFDLMIKTASSSNYTL TVMTIATFIFVPIVLAYTIWSYWIFRKRIEMPAVGEGY >gi|313656766|gb|GL545251.1| GENE 924 898011 - 899444 1438 477 aa, chain - ## HITS:1 COG:L107726 KEGG:ns NR:ns ## COG: L107726 COG1271 # Protein_GI_number: 15672686 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Lactococcus lactis # 3 476 4 474 491 494 55.0 1e-139 MNIVSLARFQFAMTTIFHFFFVPFSIGTVFTVAVMESMYVHTGKDEYKKMTRFWGNIFLL SFAVGVVTGIIQEFQFGMNWSDYARFMGDIFGAPLAFEALLSFFIESTFIGLWMFTWNKV GKKLHLFFIWMIVFGTVTSSLWILAANSFMQHPVGFTIRNGRAEMVDFAALLTNKQLVLE LGHVLTGALLTGATIITGLTAFQLLKKKNLSAVNQEIYHKTMRLGLLLMLIFSLGSIGMG DVQMQALVHDQPMKFAATEAVYKTTGDEAPWTVVGFADPKTHEVKGKIEIPDMLSILSYH STKGSVKGMEEINSELEKRYGTHIAGHKMNYYVPVNTLFWSFRFMAGFGSLMALVSIVGL VMTCKKKQSLYEHRWCLWVLALMTFTPFIANTCGWLITELGRAPWTVYGLFTIEQSVSPN VSVASLLTSNIVYFCLFTGLAVVLISLIIRYLHNDPDELAKKDQASFATDPFAKGAF >gi|313656766|gb|GL545251.1| GENE 925 899607 - 900311 406 234 aa, chain - ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 226 252 479 491 124 35.0 1e-28 MPLEMFKNKEFVAQNAITLLIMGVVIGLEFYLPTWMQGINGLPASIAGFAVTPSALMWVI GSFIAGSLMPKLGSKRLISYSLIFLFIADLVLVVIPTYTQFGVFCAITFLHGLTFGTIAT TTQVKSQVIVGKENIGVATAFNTLMKYLGQTVMVSIYGIVFNSVMAHQLSKHSNLNMSMM NKVVNSQKVHQLAKDLVPDLRNVLHISLQSVYITSLIVIILAFVINITYHESKK >gi|313656766|gb|GL545251.1| GENE 926 900311 - 901057 508 248 aa, chain - ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 243 1 248 491 213 47.0 3e-55 MEKKKVAIVTFAIFLTTFMSAVEGTIVSTAMPTIVSDLDGLEIMNWVVSIFLLMTAISTP LYGKMADRFGRKPVFLFGILVFVLGSCLCGLSHNMLQLIVFRVIQGIGSGAIQPVAITML ADMYPLHKRAKMIGLNSSFWGLASVIAPLLGGFIVQHLTWHWVFYINLPFGVLAFLLISF FFKEKIVPKDGKLDLRGTIFLVSFLLAFMLFLQGLSENYSVLLLISLLTLSCVSISFLKR QNKKLQIQ >gi|313656766|gb|GL545251.1| GENE 927 901070 - 902263 1542 397 aa, chain - ## HITS:1 COG:BH3300 KEGG:ns NR:ns ## COG: BH3300 COG0192 # Protein_GI_number: 15615862 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus halodurans # 3 388 7 393 399 550 71.0 1e-156 MEKRLFTSESVSEGHPDKIADQISDAVLDAILKQDPNGRVACETIVTTGMVFVFGEISTS AYVDIQSVVRQTILDIGYNDPSLGFDGNNCAVMVDIDEQSPDIAGGVDHSIETRDTNDSD ALDKIGAGDQGLMFGYAIDETPELMPLPISLAHRLMRKVAELRKKNILTWLRPDSKAQVT VEYDENDQLKRVDTVVISTQTDAEVSNEEIKRAMVEDVIKTVIPNELLDDDTKYLINPSG RFVIGGPKGDSGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSASYAARYVAKNIVAA GLAKKCEVQLAYAIGVAHPVSIRIDTEGTGKVANDVLVKAVRSVFDLRPAGIIEMLNLRR PIYRQTAAYGHFGRTDIDLPWERTDKTQEILDYIKEN >gi|313656766|gb|GL545251.1| GENE 928 908380 - 909126 189 248 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 242 2 245 306 77 27 2e-13 YDLAIVGAGPVGLFSAYFAHLHGLKVALLESLPELGGQPAALYPNKVIQDIPVFRDIKSF ELTEKLCSNLSDDTDIYRNYKVENIIFDNSHFIINDDLISKTILITTGNGAFKPKAFPLA VPDNIESKISYFVKNPQDYQDKQVAVLGGGDSALDWALELSQYAKVSLIHRRNQFRGLES NVEKVKKNPKVSVLTPYLPADLTENSGRCELSLKKVGTDETNSFIFDNLIVAYGFRANNR FIKNGVLS >gi|313656766|gb|GL545251.1| GENE 929 909156 - 909323 197 55 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1495 NR:ns ## KEGG: LDBND_1495 # Name: not_defined # Def: ferredoxin--nadp reductase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Pyrimidine metabolism [PATH:lde00240]; Selenocompound metabolism [PATH:lde00450] # 1 55 254 308 308 87 74.0 2e-16 METSVKGIFAAGDSVGYEGRVPIIGIGFGEAQIAITSIMQTIFPDKQLTIHSTSI >gi|313656766|gb|GL545251.1| GENE 930 909334 - 909846 523 170 aa, chain + ## HITS:1 COG:BS_yutG KEGG:ns NR:ns ## COG: BS_yutG COG1267 # Protein_GI_number: 16080281 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Bacillus subtilis # 13 155 18 160 166 188 66.0 4e-48 MTEHFYQHTIELLNERGVTLKDIEDLVYYLQKDYIHPLTHEAMQESITKVLQKREVQNSI ITGIELDKLAEKKQLSEPLQSIMENDEPLYGCDEVLTFSITNLYGSIGFTNYGYIDKTKP GILKWLNDKSTGKINVFLDDLVGAVAAAAASRLAHTQTSLKDDSIYSRKD >gi|313656766|gb|GL545251.1| GENE 931 909849 - 910499 638 216 aa, chain + ## HITS:1 COG:lin0035 KEGG:ns NR:ns ## COG: lin0035 COG0586 # Protein_GI_number: 16799114 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Listeria innocua # 3 212 7 216 219 192 52.0 3e-49 MGLISFILHIDDHLVNIVNQFGNYTYLILFAIIFIETGLVVFPFLPGDSLIFAASAMAAN TKYGLDIWLVYLAVVIAAILGDSANYEVGAWSTRAGSKHAWFNKLINEKNRYAAEKFFER HGSLTIVIGRFIPFIRTFVPFISGGSKMHYGHFITYNILGGILWTGLFSIIGYFFGNLPI VKTHFSLIVIAIILVSVVPIAIVALKKKIILKKGFH >gi|313656766|gb|GL545251.1| GENE 932 910514 - 911749 1541 411 aa, chain - ## HITS:1 COG:L0082 KEGG:ns NR:ns ## COG: L0082 COG0112 # Protein_GI_number: 15672583 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Lactococcus lactis # 7 410 12 415 415 518 66.0 1e-146 MKYAEKDPQLWDAIDKEEDRQQHTIELIASENIVSKAVEEAQGSVLTNKYAEGYPGKRYY GGCQYIDVAEQLAIDHAKELFGAAYANVQPHSGSQANAAVYQALLKPGDKILGMGMDAGG HLTHGAKVNFSGKMYQTYAYGLNPETEELDYDAIRKQALEIKPQIIVAGASAYSQIIDWD KFRAIADEVGAYLMVDMAHIAGLVATGYHPNPVPVADVVTTTTHKTLRGPRGGMILSRSE ELGKKFNSAVFPGSQGGPLEHVIAAKAQAFYEDLQPQYKTYIGQVVKNAKAMAAVLNASD TIRVVTGGTANHLLVLDITKTGLTGKDAQNLLDSVMITTNKEAIPNDPRSPFITSGLRIG TPAITSRGFDEEDSREVAQLIIETLNNSNDQAVLSKVADSVQKLVAKHPVE >gi|313656766|gb|GL545251.1| GENE 933 911803 - 913179 1074 458 aa, chain - ## HITS:1 COG:lin0882 KEGG:ns NR:ns ## COG: lin0882 COG3428 # Protein_GI_number: 16799955 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 57 455 64 487 494 121 23.0 3e-27 MNKHLSPLALLFFLKDQVSSKIGLLPAILVVCDYLNFLKGQYFIQISCFVVLVLLAAFVE YFSFTYEFLDNELVIRSGLFKKKEKHIPYSRIQTIHTNHPFWIEPLKLTKVILETANQDD DGIVVLRVISQAELERLQATMQVAESAVEDEVKGYLINSRDLAIYTLTSPGIIAGIVLVL GFYGKLSDFNIKIDFSWPLLLLVLLVGIVLSFLATWQRYYNFNIYNEQNQLKAKSGLFTK TQMTLPVKRIQGIIFEATYFRFLTKLVSIQAIASSKVTGEEEGNINLIPVVEAKYAADAL HELLPTWPSVIKKLIPLAKSGKRALFVYRFNCWFWISLVVNLLAYLYLGQAFIWVAILSL VIGLYILFTSIIIGKTSGVSFDDKYLYLGTKRYFKIIKAILPRDKIQYLKLSQSVWMKRK KLMHIELEVMDKNYGYQIRVRYLPEQVAKNVQKWFMEK >gi|313656766|gb|GL545251.1| GENE 934 913172 - 913657 331 161 aa, chain - ## HITS:1 COG:lin0881 KEGG:ns NR:ns ## COG: lin0881 COG3402 # Protein_GI_number: 16799954 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 156 9 156 160 71 29.0 8e-13 MVNKLPKEIKKAWLVKNILDALGTIVGFGIIYFVLKIFVDKNWLHLTLIVWTVLFALVIL FDLIQILLIPYIYNFWTYQITGEFVELHKGYIFRKQITIPLARLQTVTLEAGPILRWQNL TELYLHTASSSEKISGLRLEDAKKFRKQLLTIIQKAGDTHE >gi|313656766|gb|GL545251.1| GENE 935 913736 - 913897 92 53 aa, chain - ## HITS:1 COG:no KEGG:LSA1051 NR:ns ## KEGG: LSA1051 # Name: uvrA2 # Def: excinuclease ABC subunit A # Organism: L.sakei # Pathway: Nucleotide excision repair [PATH:lsa03420] # 1 52 787 838 841 76 69.0 3e-13 MTNCDYLIDLGPKGGSNGGQVMATGNPFALVKSNNSSLTLQYLRQHLLKYHLV >gi|313656766|gb|GL545251.1| GENE 936 913903 - 915282 791 459 aa, chain - ## HITS:1 COG:L0256 KEGG:ns NR:ns ## COG: L0256 COG0178 # Protein_GI_number: 15673800 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Lactococcus lactis # 2 459 426 886 940 339 40.0 7e-93 MNIAEVSNLTLAELVHFECKTINWLPEEMKGIAKAIFKDLEDNLTPLLDLGLDYLTLARN GNTLSTGELQRIQLARTLRTETTGVLYVLDEPTIGLHPDNVSGLLKIFRKLIDQGNSLVV VDHEVSVIEAADWVIEIGPEAGEMGGRIVAEGRPEDLENNPKSMIGKYLSGTAKITSLKK QDISLAQSTQLRVKDYFNLHDVEVAIPDEKLTAVTGFSGAGKTSLILDSLVPAIKNPHAL PAQVTKLTTSIKSVISVDAKPVGKNTRSCVATYTSIMDNLRHLFANLLEAKEQKLKISAF SYNNKQGACPTCQGLGKISLDLQYLPDMEQVCPTCQGQRFAPDILKIKWHNYSIAELLNL SVNEAIPVFSHESKILRELTLLQEVGLGYLHLGESTPELSGGEAQRLKLIKHLQKSCKHT LFVFDEPTIGLHPSDIQVLLKVLRRLQKKVQQLSSLLMI >gi|313656766|gb|GL545251.1| GENE 937 915402 - 916253 958 283 aa, chain - ## HITS:1 COG:DRA0188 KEGG:ns NR:ns ## COG: DRA0188 COG0178 # Protein_GI_number: 15807854 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Deinococcus radiodurans # 12 278 96 328 922 144 34.0 2e-34 MIEKSNFPPKNIEVRGASINNLKNIDIDIPLHKFVAITGPSGAGKSSLAMGILYAEGSRR YLEALSTYTRRRISQAKETGVREVRHIPSAIALRQRLTVPSERSTVGSMSEILSVIRLIF SRLASPVCPNGHKIAPSLAIAKAMDAPGDKMGEITCPTCQVEFMAKSAEDFAYNSGGACP KCHGTGKVQTLDPTKIIPDDNKTINEGAVASWRLPGRNFMNTIAATLGVRLDVPFKDLTN KEKDIVLHGEKKNTQLIFTLQLGESIAPMERYMRMHMKRFMHP >gi|313656766|gb|GL545251.1| GENE 938 916372 - 917763 1290 463 aa, chain + ## HITS:1 COG:BS_ysfC KEGG:ns NR:ns ## COG: BS_ysfC COG0277 # Protein_GI_number: 16079920 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Bacillus subtilis # 50 460 43 456 470 261 38.0 3e-69 MYNNLILTKEEILSDLRSKINNDSLFTDEETLKKQSFSDNLAGQHGLALAFIEAHSTADI QNALAIARKYHLPVITQNKFTSTVIGADASDNALILSTAKLNKIIELNTIDGYAVVQPGV VNGDLDAAARKEGYFYAPDPASRPYSGIGGNIATNAGGLSGVKYGSTRDNVLGLKVVLAN GDIINVGGKTTKQAFGYDLTHLFIGSEGTLGIIVEATVKLLPLPLGESAMGLAFFPDMTT LSTATSAIRRSGSDPVMLEALDINTLKAIDKFKNTNYSNNGNAALIFKIDGITKEKIDIL KNTLAKFSASEVTLTTDETKQKQIIELRQAMLPAIFTGRNAVMEDMAVPTSKMAELVDYI QELSQKYDLEIFTSGHAGEGNLHPTITWSTAVSETPKEVVTVIKLMFEKALELEGTISGE HAVGLLKNKWNHVELGESVDIIQHQIKNLFDPMGILNPKRKID >gi|313656766|gb|GL545251.1| GENE 939 917827 - 918411 474 194 aa, chain - ## HITS:1 COG:CAC0748 KEGG:ns NR:ns ## COG: CAC0748 COG0778 # Protein_GI_number: 15894035 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Clostridium acetobutylicum # 10 184 33 224 241 72 26.0 6e-13 MFKRLFLERIDKLNSSHNLTMKVVFDDNSSLSLLGKFILSQNAQNFIVLAGSDSQQEGLG YCAANLMLFLQSIGLNSWFVGGTYNRKRLESKYHENVYGVVVFGYGIDDGKNHKSKSFTQ VSQSDNENNWFKQGVEAALKAPTVLNKQNFKFYLTDGVVKLEVKESPYAKLELGILSYFF ELASGMKIDNYYIK >gi|313656766|gb|GL545251.1| GENE 940 918568 - 918984 515 138 aa, chain - ## HITS:1 COG:L12334 KEGG:ns NR:ns ## COG: L12334 COG1396 # Protein_GI_number: 15671989 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 3 71 2 71 107 59 44.0 2e-09 MDQINERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSKLYDVSID YIVGNTEFDRKEDTQKTSEQAVLKKQKAKRALKGVLWGTACMLAAFGMEVLKQDGWVIAI FAAVPMHFLINYYVDNKE >gi|313656766|gb|GL545251.1| GENE 941 919113 - 919523 302 136 aa, chain - ## HITS:1 COG:SA2495 KEGG:ns NR:ns ## COG: SA2495 COG1396 # Protein_GI_number: 15928290 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 3 63 2 62 189 58 47.0 4e-09 MNNLNERLKTLRESSNLSQEDVANKLKISRQSISKWELGDAVPDIGKLMELSKIYNVSLD YLVGRDSSEKVKNTKEALRKKRNASQIILWSLCLAIVCLLIMFLEDGRAAVLFLFATPVS AWIQYHYLQELSKLPK >gi|313656766|gb|GL545251.1| GENE 942 919667 - 920032 84 121 aa, chain + ## HITS:1 COG:BS_yeeK KEGG:ns NR:ns ## COG: BS_yeeK COG1309 # Protein_GI_number: 16077753 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 64 185 248 378 60 42.0 9e-10 MGRKKKFNSTEVIRAITSVFLQYGYEAASLDDLVKATGLLRGSLYSEFGSKRGMFLAALQ NNLDQVKDGEKTIHLMLIAMLELSRRDKEIHTLIQEWCQSFPSNELEQILGSQLLAVANI K >gi|313656766|gb|GL545251.1| GENE 943 920043 - 920387 427 114 aa, chain + ## HITS:1 COG:no KEGG:LCK_00432 NR:ns ## KEGG: LCK_00432 # Name: not_defined # Def: hypothetical protein # Organism: L.citreum # Pathway: not_defined # 1 113 1 113 117 120 52.0 1e-26 MRNKLTIKNSDLIVAPQGLDKFWALKNKLTIPLNHIVGATLDNGIIFDKKGLRLPGTAAF GYYVGTFKSNSDTIFYNAKKGENIIVIQLKDENYNRLVLSVDNPHEWVDKINNL >gi|313656766|gb|GL545251.1| GENE 944 920487 - 920984 583 165 aa, chain - ## HITS:1 COG:MA1121 KEGG:ns NR:ns ## COG: MA1121 COG0534 # Protein_GI_number: 20089987 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 1 159 267 426 475 85 33.0 5e-17 MALLNSTLAAYGAKEVAAMGITQKIYSIVILAIVGFTFGSQPLIGYNYGTKNWKRLREAL HFEILVQVVYAVVSALILIIFAHTIVGLFMNDAAIVNSGSYMLFATLITTPLAGVIMVYT TVFQSIGNAWGALIMSLARQGVVYFAAMLLLEHILGLSGRKLHLM >gi|313656766|gb|GL545251.1| GENE 945 920897 - 921241 183 114 aa, chain - ## HITS:1 COG:no KEGG:LBA1571 NR:ns ## KEGG: LBA1571 # Name: not_defined # Def: membrane protein # Organism: L.acidophilus # Pathway: not_defined # 1 74 165 238 444 70 44.0 3e-11 MIGSISGTVFAIIFDPIFLFAFKLGSAGVATANLIGFIVTDTVLFYYMIKRAKFINAKLK FIKVEQRLFNKVIAQAQLTSLLILLVWLCLTVLWQLTALKKLQLWELLKRFIVL >gi|313656766|gb|GL545251.1| GENE 946 921460 - 921732 364 90 aa, chain - ## HITS:1 COG:MA2050 KEGG:ns NR:ns ## COG: MA2050 COG0534 # Protein_GI_number: 20090897 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 2 87 5 93 468 60 37.0 5e-10 MNELFAKVPIRQVYFKLAFPVVLGMITTMVYNLADTIFVAKTGDTNLVAAVTISTPLINF LIAFSDIWGLGGSSVISRLFGEKNMKKQSE >gi|313656766|gb|GL545251.1| GENE 947 921938 - 923212 790 424 aa, chain + ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 3 409 5 420 428 212 33.0 1e-54 MSSYNDCIKFSLDIQDPNITFNAHFFKLINDIKYKVFQATLIQPACPFCGSVNLIHNGHL QTNIRFITSNASSPVIIRLNKQRVLCRDCNTRSMAKSKLVNKYCSISNPAKRKVLSALTE DRSMTSIARENNLSVNTVQRVLASCSHRFIDNYNYLPEHLAFDEFKGVDKKLHFICLDGQ KHEVVQILRNRYKKSLLKYFGKFSPSARANVKTVSMDLNFYYQNIVRACFPNAEIIIDRF HMVQMLTRSFNSLRVLVMKSFDKRARQYQLFKSPWKLYLKSFVDLDKIHPHYNWHFKDYL TQEQVVMEGISCDPRLDNAYNLMQDFMAALKARDTNSLKEIINSKAEVGTLMHKTLLTFK HNLRAVLNGARFSYSNGCLEGFNRKIKQIERTAYGYSNYINLLTRIRLEENKVKEKEPSN LYIA >gi|313656766|gb|GL545251.1| GENE 948 923303 - 926734 4574 1143 aa, chain - ## HITS:1 COG:no KEGG:LJ0621 NR:ns ## KEGG: LJ0621 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 140 804 2147 2736 2789 184 33.0 3e-44 MDLYKRYSCCRKAVSNLDELKDVSSITWATTPDVSKVGNVPAIVVVTYKDGTSNAAPINI EVKGLANDYKPEGTTIYAGLNEDITNRAADGIANKDQMPVANKPEGTVHTTYSWKDNIIP DTTKPGTKYGIVEVNFPDGSTKDVPVEVKVTSLASDYQNKIDTKQIIAKYKGNIPQASDG IANKDQATKEGDKDFPSLADVLAPNGIQWKKNFEPDLSKPGLTSGEAILTFKDGSTAEVT IPVLVQTDADRNTPETQTIKTLPGQTVNPEDGVINLHKPGENNPQLPDGTKVTFDNQSDV DDFTKHGMPGSDKSFDATVTYPDGTTDKIKLPVHITADNEVNTPITQGIITPKDSVPDAN KGIANLKKATTKEGKTYPALPENTTVEWVNPGQMKTELENAKGGTTKNYDAVVIYPDKST EIVSIPVTVATDADTYKVVTQPIDLKDRNLPDNADDGITNLHKPADFKTPQLPDGTHAEW QDKDAAQEVVKNLKPGETVKLPATVVFPDGSKKGEGIDVSVHLHGQSDDYNIETQPVNTD KDGNLPENADSGIKNLGKLPEGTHASWGDGAQDIAKNLKPGETKDVPATVVFPDGSKKEI TIPVHREGQSDGYDVEPQLVNTDKNGQLPNAKEGIKNLADLPEGTNPTWADRAQDKINKT KPGTDTTAQVVVTFPDGSTKEVTVPVHKHGQSDDYGDKIVTQRVETDSHGQLPENADSGI KNLGDLPEGTHAVWGQGAQTIVDGMKPGETKDVPATIEFPDGSTKDVTIPVYKTSTRDQG TLNPPTDKVSVDDTKHITDEDKGKVIDNVKKSNPDKDITDAHVDDDGTFHGKVDGQDVVI PGTETVVEKQKESLNPPTDKVPVDDTKHITDEDKGKVIDNVKKSNPDKDITDAHVDDDGT FHGKVDGQDVVVPGTETVVEKQKESLNPPTDKVPVDDTKHITDEDKGKVIDNVKKSNPDK DITDAHVDDDGTFHGKVDGQDVVIPGTETVVEKQKESLNPPTDKVPVDDTKHITDEDKGK VIDNVKKSNPDKDITDAHVDDDGTFHGKVDGQDVVIPGIETVVEKSTNNQKSDTNKGLIS NDNSEKNSHMINANVNTKSRNSLSAKQNRLPQTGSETSGLSALGLAMLSLVGLGFLIKKR KED >gi|313656766|gb|GL545251.1| GENE 949 926674 - 926958 179 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313472507|ref|ZP_07812997.1| ## NR: gi|313472507|ref|ZP_07812997.1| surface protein Rib [Lactobacillus jensenii 1153] surface protein Rib [Lactobacillus jensenii 1153] # 1 94 1 94 94 167 100.0 2e-40 MNADQAGKQNEQLPDGTSYTWANGNVPDTTKPNKKTGYVTVTFPDNSSRTVPVIVNVIGD GRSDAEKYQLKAHDIWTYINDTPVAERQFQILTN >gi|313656766|gb|GL545251.1| GENE 950 927198 - 927749 535 183 aa, chain - ## HITS:1 COG:no KEGG:LJ0621 NR:ns ## KEGG: LJ0621 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 20 162 2275 2410 2789 74 40.0 1e-12 MTNRAIDAIDKDKSTNLPTDPSAYTWVNGAPDTSKTGDIPATVKVTYPDGSYNTVDVTVH VTSDAEKYSPVPETISVPKGTDLSGRAKDGIANADKDANGKEKLPDGTKYEWDGGVPNTS VTNNKYGHVKVTYPDGSSTVVEVPLNITDNNKSDAEKHNPQANILHATLNQDLSSNDWAK KAF >gi|313656766|gb|GL545251.1| GENE 951 927913 - 930564 3139 883 aa, chain - ## HITS:1 COG:no KEGG:LJ0621 NR:ns ## KEGG: LJ0621 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 645 830 2366 2554 2789 68 34.0 2e-09 MKAVQSSNQAANLLAESKVEDSTTANVSDFDSFNSALMNQNITTININSDFTSGNYGTNV EHRRVVPRTLVINGNGHTVDLGSIGYFMNPGGNQAADWTVENGTFYSKSAVGPFALTGDH GTDKAWQATNGAVHRMTYKDMTVYAGGGAYAANAEIDLEGTNNLNATASYQSKFSNGTVY TETGGNRSGVEGQWIIIKDNANVTVNTDHGQAISTEYSDGNHRIEVGENATLNGNYLYTT YGTPYGGGKIAVLSNGANGGTVIFHKGSKSHFTMPNQNVTGFGGNGFSNYGTGSVLYLGA ANTTIEKGAEVTIDNPKEANNDNSIFIRSDGTQLNIFGNLIINDGARDYTIRADNRVSIN VGQSIADDDYSNDNGKLIINRNGDFYLNNDGGALSMWGPITINVNSGAALEVYSTGINNV SGSGANPALMRVGGSSKLNVYKRGTFILSDSSNGKVSLVDDYNANGNFNFDNTAKVIFDI SNNNNQNSRIFALNGTVYATHDKVRAMLTPSSNIADMGTFKTVQFNTSGQGGVTGDALHS EYQNQAYNNIVAIRDAIRTGQLRYLEFSTRSVNNASITGEGHGFTDNGAQIKGSVVDEST NTGAVAVAYDKDNNKVGSGNVDDQGNFTINLDKPLLNKEEVKVRIETPRGASGFVSTTAP LGPTAKSPITVAKDDNLAGQDASQYITNKDEIANIKPGTTDYEPTFKSAAWKSVDTNTKK GIITVTYADNTTTDLDVDLNVVDKITDADKFTPEGGTIKVDNGHKLDGNDAYEAIKNHDD LPADKAGYNWVVDENHPAVDTTKPGDQTGYVQVTYNDGSKSDLVPVTVHVIADNEKSLLL VRLKTSKKAKVQILKTLSLIKMEKLAKMARPILSCLMVLNMNG >gi|313656766|gb|GL545251.1| GENE 952 930818 - 930985 77 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260664944|ref|ZP_05865795.1| ## NR: gi|260664944|ref|ZP_05865795.1| cell wall/surface protein [Lactobacillus jensenii SJ-7A-US] cell wall/surface protein [Lactobacillus jensenii SJ-7A-US] # 1 54 1 54 2089 110 96.0 4e-23 MFSKNNMKMRMQKVADKEQQHFALRKLNVGLVSVLMGTTLFFVGQTSIAKADRIY >gi|313656766|gb|GL545251.1| GENE 953 931400 - 932269 851 289 aa, chain + ## HITS:1 COG:no KEGG:LAR_1469 NR:ns ## KEGG: LAR_1469 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 286 1 286 287 271 48.0 3e-71 MFRRHLVDWGLLTLSFIILACVLLMWLAGQTSSLIFNSITVIISLGVLAGCIIPQIALTW LIIFLTTIGSASLLLGYVVMPTFQKLLLLSTFPIIASLTALAKQIIGAWGWIDRNRTDIN NYIAHYNPVVKLKSKYDATHLYHKEVRFIINEEKAKLRIDLNMIQWVHSKQFRQFHEEEY KETLHSISKILKDLRFPSEQIYYLGNETFLIISYALDQETLTYKNAQTQASLKKLSSFQA LPQYKWASLHINRKNVYDYMELNDALRYLTREMETDLVIEYLKGVESCD >gi|313656766|gb|GL545251.1| GENE 954 932466 - 933725 916 419 aa, chain + ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 30 417 49 416 416 223 34.0 7e-58 MTIVTLIGACSFWLKYSKILIKVTKLSRYPTISIIVPAHNEELVIAQTTKALLNLNYPNE KIELLLYADNCTDQTAQIMQRVIANSDSNNKPAHIKVIERTGNGGKAGVLNDALKIAHGE YLAIYDADAIPEKNALYFLVKKVLENPDKYVAVFGRNKTRNAAQNFLTRCINQEIVVTQR IQHCGIWHMFKIGRIPGTNFIIQRDFVKEIGGWRNGALTEDTDISFKIMQSGKLIALAYN SEAFQQEPERLRDYYFQRLRWAKGNYQVVIGNFIHLFDRSNWRVKLETFYYACTFFWFNA AIILSDLIFLSNVIAWLARLFNPAIQMPFTFGESNILITQLLLLNWLFMIILYLLQITTA MATQYGQATTSQIWLGLASYFTYSQLFIIVSVHAVISVTLDSLFHRNKTVWVKTRRFNN >gi|313656766|gb|GL545251.1| GENE 955 933739 - 934224 447 161 aa, chain + ## HITS:1 COG:no KEGG:LAR_1467 NR:ns ## KEGG: LAR_1467 # Name: not_defined # Def: endoglucanase # Organism: L.reuteri_K # Pathway: not_defined # 6 156 7 159 379 161 50.0 9e-39 MKNKLIGVFFLLIVFGYIAVFFLIRINNPKQVQLKTYQEWKKEYLVNKGHNQTFVNAGSR KNPIALSEAQGFGLIITTKAAKLGWAKEADFDKLLNYYLAHQDYVDDKHTQRVSLMQWKQ YYRHHHWISEYNSATDGDLYIATALDTASRIWPKKANIIAI >gi|313656766|gb|GL545251.1| GENE 956 934191 - 934610 338 139 aa, chain + ## HITS:1 COG:no KEGG:LAR_1467 NR:ns ## KEGG: LAR_1467 # Name: not_defined # Def: endoglucanase # Organism: L.reuteri_K # Pathway: not_defined # 3 132 157 286 379 147 53.0 2e-34 MAEKGEYYRNLEIKLANDILRYEYNPKTGLLTTGDWVRLDSNYANLFRTSDVLPFIFTNL AKTTKNDKWCQVKNAMLTKLVQLSNQHKTGLIPDFAWASKKSVKAVAPKTIAGKNDGYYA YNACRLPGFLPKGMMLNQD >gi|313656766|gb|GL545251.1| GENE 957 934622 - 934861 119 79 aa, chain + ## HITS:1 COG:no KEGG:LA2_00625 NR:ns ## KEGG: LA2_00625 # Name: not_defined # Def: beta-glucanase precursor # Organism: L.amylovorus # Pathway: not_defined # 1 78 272 349 353 97 58.0 1e-19 MLKYFAKQNIVYGGYKLTGKTLVKNQSPSFSAPIFYGVNHFRGQGFDNLFVSQQYIYSKP LPQDDYYGATLTTLVAVDR >gi|313656766|gb|GL545251.1| GENE 958 935040 - 936449 1337 469 aa, chain + ## HITS:1 COG:BS_ykbA KEGG:ns NR:ns ## COG: BS_ykbA COG0531 # Protein_GI_number: 16078351 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 34 463 5 434 438 377 50.0 1e-104 MPTLLTTKLFFTYNKRVGFYLQKNGVIKMKQQPNENLKRSLGFTSALSIVIGTIIGSGIF FKQASVLDSAGSSALAILAWILGGITTLTSGLTIAEIGAQMPYTGGLYIYIENIYGRMAG FLAGWMQIIIYGPAIIASVSGFMSILMANFFGLSSNWRIPLAIGSVILIALMNLFENKIS ATFSVVTTLGKLIPIAAIIIFGLFWGNQNALSQTVTEVSQSTSNFGVAILATLFAYDGWI LIANLGGEMKNPQKLLPKAIILGISTVLVIYTLITIGILRFLPANLIHHLGENAPAYMTA KAFGPLGGKIIAAGIIISMLGTLNGKVLTFPRIVFAMAKRKDIPFSKSLSYLSPKGKAPI AATVFVSALAFIMMLFFDPNRLSDLCVFSIYCFYILAFFGIFILRKQNNKRPFSTPLYPL VPIIAIAGGIFVAVCEIINDFHGVILFLGFIALGLPIFYLVKKYYNSKV >gi|313656766|gb|GL545251.1| GENE 959 936680 - 937705 1121 341 aa, chain - ## HITS:1 COG:SP0182 KEGG:ns NR:ns ## COG: SP0182 COG1619 # Protein_GI_number: 15900119 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Streptococcus pneumoniae TIGR4 # 3 341 2 339 343 473 66.0 1e-133 MKVNKIAIVSLSSGILGEDAVAHERELGIKRLKDLGLEVEFMPNSLKGLAYIKNHPEKRA EDLLAAFKDYSVDMILCAIGGDDTYRLLPYLFEHDELKQVAKQKIFLGFSDTTKNHFMLN NLGIKTFYGQAFLTDICELDKKMLPYSQAYFEELIKTGTIKEIHPSDVWYEERKDFSKKA VGTPRISHKNNGFELLRGPKQFSGEILGGCIESIYDFFDNSRYEDTISLTQKYHLFPSLD EWQGKILLLESSETKSAPEKYRQMVRALADYGIFDVVSGVLVGQPQDKAYYEEYKQILLE EIQNADLPIVYNLNVGHSTPHCIVPFGVKAEVDITQEVIKF >gi|313656766|gb|GL545251.1| GENE 960 937804 - 938235 276 143 aa, chain - ## HITS:1 COG:lin0458 KEGG:ns NR:ns ## COG: lin0458 COG1959 # Protein_GI_number: 16799534 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 1 135 1 136 155 119 47.0 2e-27 MKYSYKFSDAIHLLSYLEIFKNEDLSSRAIAASIESNPSIIRQLMSDLRSAVLIETRQGK ASARLIRKPSDITLFDIYMAIDIDHELLHVDPKTNLNCSVGRNVQTSLVGFYEEIQNSAF EQMKKITLQDVISDLLARDTSIN >gi|313656766|gb|GL545251.1| GENE 961 938261 - 938395 90 44 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855676|ref|ZP_04645975.1| ## NR: gi|238855676|ref|ZP_04645975.1| putative nucleoside-diphosphate-sugar epimerase [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] nucleoside-diphosphate-sugar epimerase [Lactobacillus jensenii 208-1] putative nucleoside-diphosphate-sugar epimerase [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] nucleoside-diphosphate-sugar epimerase [Lactobacillus jensenii 208-1] # 1 44 1 44 44 71 100.0 2e-11 MATLFASFDEPIDDGSLDVNSNVVETLDHPLLPLEDAIKEVIAR >gi|313656766|gb|GL545251.1| GENE 962 938637 - 939683 728 348 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 9 341 519 860 860 285 47 6e-75 MTDKKDIRILAYESSCDETSTAVIKNGREIESLVVATQIKSHQRFGGVVPEVASRHHIEV ITQITKEALGEAKVTWDDIDAIAVTYGPGLVGALLIGVSAAKAASMATGIPLIGVDHIMG HIMAAQLEDEIEYPALALQVSGGHTELVLMHDPIHFEIIGDTRDDAAGEAYDKIGRVLGV NYPAGKTIDAWAHQGHDTFNFPRAMLEDDDYDFSFSGLKSAFINTCHHADQIGEKLDKYD LAASFQAAVVDVLSHKTIRAIKEFKPKTFVLGGGVAANKGLRERLEMEIAKLDDKPNVII PPMKLCGDNAAMIGAAAYNLYKAGKFSGLDLNADPSLELPYADAILDR >gi|313656766|gb|GL545251.1| GENE 963 939680 - 939799 208 39 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 1 39 342 380 380 84 100 1e-141 KIYKGLGFEAQFIRAGYYQDDHMDAINMVLHLKGKEDTK >gi|313656766|gb|GL545251.1| GENE 964 939781 - 940212 721 143 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 1 142 204 345 380 282 98 1e-141 FFKEEPEVNLNFTPYVTTLAGRTMQVMQASEVNIPDLLELEKKVYQGKQPWSSFSFASEL RKKHNSLYLVIYDKAQLVGFIGGRFIPCEGHITNIAVDPTYQGQGIGHYLINLIVEIARK NGARQVSLEVRADNELAQKFIKV >gi|313656766|gb|GL545251.1| GENE 965 940182 - 940448 200 88 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00389 NR:ns ## KEGG: LCRIS_00389 # Name: not_defined # Def: glycoprotein endopeptidase # Organism: L.crispatus # Pathway: not_defined # 1 67 168 234 244 84 55.0 2e-15 MEKHEDLLNSLPCDIIWGNEEENLVHASQIAKLALTSEVIDADQLVPRYLRRTQAEMDWH KKTGKPFNQIVIMLKKFRHFLKKNPKLI >gi|313656766|gb|GL545251.1| GENE 966 940424 - 940831 562 135 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 11 128 7 124 380 221 97 1e-55 MNISFRRFASKDCNLSLKQIDRLAVAIGPGSYTGLRIGITTMKMFASILNKEIVGISTLQ ALAANKQAADSLTLACLDARNNNFFAGAYVNGEAVIADGHYSFEALLEELKKVLAEKNIQ KLIIWVQGWRSMKTC >gi|313656766|gb|GL545251.1| GENE 967 940936 - 941079 99 47 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282931576|ref|ZP_06337070.1| ## NR: gi|282931576|ref|ZP_06337070.1| putative membrane protein [Lactobacillus jensenii 208-1] putative membrane protein [Lactobacillus jensenii 208-1] # 1 47 117 163 163 87 100.0 3e-16 MSFTAALTARLLKEVIVPWIQMIIIFFVLNGLQRVNARREKLEKSRM >gi|313656766|gb|GL545251.1| GENE 968 941135 - 941473 419 112 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_01925 NR:ns ## KEGG: LAC30SC_01925 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 3 108 4 109 172 124 64.0 2e-27 MKKFFFKLSLQELIFLALVIAIKIILSRFSFGPTYVKVGLGFIGSVALGYFFGPIWGAVG GGISDLASSALFGNEGGFFIGFTLTAMLGPMIYGFFFIENRLKFGELLLLVY >gi|313656766|gb|GL545251.1| GENE 969 941770 - 942309 604 179 aa, chain - ## HITS:1 COG:no KEGG:LBA0387 NR:ns ## KEGG: LBA0387 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 3 171 10 178 178 206 64.0 4e-52 MKKFFFKLSLQELIFLALVIAIKIILSRFSFGPTYVKVGLGFIGSVALGYFFGPIWGAVG GGISDLASSALFGNEGGFFIGFTLTAMLGPMIYGFFFYRKPIKIWRIIVASLLVTIFVNV LLNTVWLHFIYKMSFTAALTARLLKEVIVPWIQMIIIFFVLNGLQRVNARREKLEKSRM >gi|313656766|gb|GL545251.1| GENE 970 942309 - 942887 355 192 aa, chain - ## HITS:1 COG:no KEGG:LBA0387 NR:ns ## KEGG: LBA0387 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 8 171 12 175 178 143 44.0 3e-33 MNKYKDNFFKLSLQNLVLLGLVIAIKLCLSSVAIGPAFFKIGLAFLGSVALGYLFGPVWG GLGGLVSSLLHLIIFGDKANVLLGTMLSAILVPMIYGFFFYNKEVKIWRVVMGHLTVTIL INIMLNNYLFSLVSGVSLQVAFIQRLPKEVILPWGQMILMYFVLKGLVPIRQRMISYEKS KNRIQEMEGETN >gi|313656766|gb|GL545251.1| GENE 971 942880 - 943194 315 104 aa, chain - ## HITS:1 COG:SPy1042 KEGG:ns NR:ns ## COG: SPy1042 COG3884 # Protein_GI_number: 15675038 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pyogenes M1 GAS # 1 99 79 179 189 79 40.0 2e-15 MRRLKKQEYYQQTRQYRVRYDDLDLNHHMTNSHYFSWMEDMLERKFLNTHEPEMVDIKFD KEVLYGQEVTSSLIINEQTSYHLISQGDQVATIAEITWKKRNNE >gi|313656766|gb|GL545251.1| GENE 972 943329 - 943607 303 92 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1534 NR:ns ## KEGG: LDBND_1534 # Name: not_defined # Def: acyl-acp thioesterase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Fatty acid biosynthesis [PATH:lde00061]; Metabolic pathways [PATH:lde01100] # 1 87 1 87 249 96 49.0 4e-19 MKYQEDYQIQYADCDETGHVKLQALIDIFMHVSNRQLENSQAGSKEMAMKNQGWVVTQYH MEFKRLPVVAEHVQVVTNPVGYNRFLNIVILH >gi|313656766|gb|GL545251.1| GENE 973 943610 - 944464 929 284 aa, chain - ## HITS:1 COG:SPy0406 KEGG:ns NR:ns ## COG: SPy0406 COG0313 # Protein_GI_number: 15674543 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Streptococcus pyogenes M1 GAS # 1 282 1 285 287 251 46.0 2e-66 MQVQSSFKEDKGKLYLVPTPIGNLEDITLRAKRILQEADYIAAEDTRTSGIMLDKIGIHN KMVAFHKFNSKQKAPELVQMMKEGTVIAEISDAGMPVISDPGYILVQECIKADIPVVPLP GPSAFATALIASGFDAQPFTYYGFLPRKASEQKPYFEAMNQAHATSIFYEAPHRLTKTLT TLASVLDDNRQIVCARELTKIHEEFIRGSIKEVLAHFEQVDPRGEFVVLISPNTDETPKV SMDELVKRVDQLVATGTSKKDAIKQVAKQNGVSKNDLYDFYHQG >gi|313656766|gb|GL545251.1| GENE 974 944448 - 944804 316 118 aa, chain - ## HITS:1 COG:SPy0405 KEGG:ns NR:ns ## COG: SPy0405 COG4467 # Protein_GI_number: 15674542 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 12 103 15 105 107 63 36.0 1e-10 MDPYSELRQVRQNLEAMSKMVAGLENDILDTLKENTELKMENQLLREKLDKLTAEKAGKE VKSQSGLASLRKIYESGYHICNMYYGTHRDPSSDCMFCLDILDNFEHKGKGVGHASTK >gi|313656766|gb|GL545251.1| GENE 975 944822 - 945670 686 282 aa, chain - ## HITS:1 COG:lin0205 KEGG:ns NR:ns ## COG: lin0205 COG0470 # Protein_GI_number: 16799282 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Listeria innocua # 3 165 6 170 330 111 37.0 2e-24 MIDLKQAAPKQISFLKTAFEQDKLAHAYLFVDSLTQRALATAYWLACLVNCTGTKRPDGT CINCERVLSGNHPDVFLVKPEGKQSLSIDQIRPLKEELAKSPVEGNRRFFFIENAQTLTM PAANALLNLLEEPVAPVTTILLTNNAQQILPTVRSRTQIIEFNDLAQANSKSQDLLLYGF SQEDLENLGETAELDKAVKYFYQELLENNDLAVVSAHKLAGMMKNKVQEDYVFYLLKKFC LDGIKQQQLLGNQALLGRLLDCDKMKFSNVSFLNRLDYLALS >gi|313656766|gb|GL545251.1| GENE 976 945670 - 945990 485 106 aa, chain - ## HITS:1 COG:BH0043 KEGG:ns NR:ns ## COG: BH0043 COG3870 # Protein_GI_number: 15612606 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 106 1 109 109 109 52.0 1e-24 MKLIYAIVQNKDAGRLSKKFNENNVRATKLASTGGFLSEGNTTFIIGTEDEKVDSVLELI KDCSQKRKEFVNPVVNSHAGEFTQPLEITVGGAIVFVTPVDEFKRF >gi|313656766|gb|GL545251.1| GENE 977 945990 - 946637 787 215 aa, chain - ## HITS:1 COG:L3846 KEGG:ns NR:ns ## COG: L3846 COG0125 # Protein_GI_number: 15672380 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Lactococcus lactis # 1 212 1 211 211 214 53.0 8e-56 MAGYFITFEGPDGAGKTTVLEKLIEKIKEQVTCEILVTREPGGSKIAEAIREIILDPENT EMDDRTEALLYAAARSQHMAEVVFPALEAGKLVFSDRFVDSSLAYQGMGRNLGIDKVAEI NQFATDGLNPDLTLFLDIKPEDGLARIAKVRPDKEDRLEKEKLSFHKKVYTGYQEIVKKY PERIKVVDASQDVDYVVADCLTILKQQLPDLFEVK >gi|313656766|gb|GL545251.1| GENE 978 946728 - 946967 258 79 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_01890 NR:ns ## KEGG: LAC30SC_01890 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 5 79 4 78 78 72 56.0 7e-12 MIFGKKTQVKEIGDQHLMVTISKLQRQLLNEQELDPTTVDYSEDNIMTSKILKAKYSFLY SVARQRHTKSSITNNAITQ >gi|313656766|gb|GL545251.1| GENE 979 946964 - 947563 487 199 aa, chain - ## HITS:1 COG:SA0438 KEGG:ns NR:ns ## COG: SA0438 COG0353 # Protein_GI_number: 15926157 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Staphylococcus aureus N315 # 1 199 1 198 198 259 63.0 3e-69 MQYPLPIARLIESYMKLPGIGEKTATRLAFYTLDMPEDDVEQFSQALKDVKTLLHQCSIC GNITETDPCQICRDSNRDHSTVMVVEQPKDVMAFEEMGEYDGMYHVLHGVLSPMEGIGPE DINIKSLITRLQKDDDIKEIIIALNSTPEGESTAMYIAKLLKPAGLKVTRLASGLAVGTD IEYANSITLKRAVQGRINL >gi|313656766|gb|GL545251.1| GENE 980 947563 - 947892 531 109 aa, chain - ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 13 108 2 97 99 103 62.0 7e-23 MARRPNFGGMGGMNMQQMMKQAKKLQAQMQEEQANITAQEFVGKSADDIVTATFSGDRRL KDIQIKPEAIDPEDPDMLQDLIIDAVNKGLTQIDEATQAGLGKYTKGLF >gi|313656766|gb|GL545251.1| GENE 981 947933 - 948349 328 138 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 138 449 579 579 68 28.0 4e-12 MEDVRNVWPDLQSVLGVSEQALLKVLEPVAASHNRVVMKCKYAFWFERTSENTNLMATLN SELAKFLKHDSEIVLVPDADWLQVRKDFLAKHKDEILARQKQGNAEIEVDQHQEDDQEKQ VIDKAKEIFGSDNINVKD >gi|313656766|gb|GL545251.1| GENE 982 948280 - 948837 367 185 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0368 NR:ns ## KEGG: LGAS_0368 # Name: not_defined # Def: DNA polymerase III, gamma/tau subunit # Organism: L.gasseri # Pathway: Purine metabolism [PATH:lga00230]; Pyrimidine metabolism [PATH:lga00240]; Metabolic pathways [PATH:lga01100]; DNA replication [PATH:lga03030]; Mismatch repair [PATH:lga03430]; Homologous recombination [PATH:lga03440] # 1 162 293 461 602 101 39.0 1e-20 MLVLKANKDSEFLTKDFTNQITTVPEKRYFQLITAANEALNDLRFTNQEEIPLDVFLVKV ANPIEESGEEKADSHNAEINPAINQELSDLKAQVVALAKKVSQTNGFASSNQVFKIDDAK KKNESPKASEPQAKPKPKRKKPVNSELNRQAVYAVLEKATKKIWKMYVMSGQTYNPFWGF QNKPY >gi|313656766|gb|GL545251.1| GENE 983 948951 - 949712 602 253 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 252 1 252 579 361 67.0 1e-100 MAYQALYRKWRPRTFDSVVGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAK ALNCLNLQDGEPCNECENCKAADSGAMPDIIEIDAASNNGVDEIREIRDKVKYAPTQGKY KVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISK QNLVDRMKFILEQENIPYEDSALQVIAQVADGGMRDSLSILDQLLSFEKEKVEYKDALNI TGYAARETTEQLF >gi|313656766|gb|GL545251.1| GENE 984 949917 - 950399 587 160 aa, chain - ## HITS:1 COG:BH0033 KEGG:ns NR:ns ## COG: BH0033 COG0590 # Protein_GI_number: 15612596 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Bacillus halodurans # 9 160 7 157 159 155 49.0 2e-38 MFSSEEKKHYMELAFAEAEKAEAQDEVPIGAIVVAPDGQVIGRGYNRRELDNIATHHAEI LAINEACKNLNSWRLIDCSLFVTLEPCAMCAGAIINARLKEVFYGAPDHKAGASGSVVDL FAVEKFNHHPQVIRGLYSEKASNMLTNFFRAIRAKQKEKS >gi|313656766|gb|GL545251.1| GENE 985 950410 - 951009 684 199 aa, chain - ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 4 199 5 200 201 210 53.0 2e-54 MAEQYFTENPNAKHDLKIVDYHLDGIDLKLTTDAGVFSKKRVDYGSGVLIRNMLAESPVS GNILDVGCGYGPIGLFAAKKWPERQVDMVDVNERAMDLARKNAEVNGVTNANIFASSVYE NVDKQYAMILTNPPIRAGKSVVSEILAKSAEHLVAGGELLVVIQKKQGAPSAKKLMETTF GNCEILERDKGYYILRSVK >gi|313656766|gb|GL545251.1| GENE 986 951281 - 951646 312 121 aa, chain - ## HITS:1 COG:SP0889 KEGG:ns NR:ns ## COG: SP0889 COG3654 # Protein_GI_number: 15900772 # Func_class: R General function prediction only # Function: Prophage maintenance system killer protein # Organism: Streptococcus pneumoniae TIGR4 # 10 103 24 118 137 60 35.0 7e-10 MNKLVLAEADEKFQGIQYEDGLSIIEEQPQAIYFGQELYPSIWEKAAFIMQKITKKHIFG DGNKRTALLATVFFLYENGYKWQRSQKDKADLVLMVTKLDDSKEAMNFLADVLSKECIAI N >gi|313656766|gb|GL545251.1| GENE 987 951676 - 952227 525 183 aa, chain - ## HITS:1 COG:L197116 KEGG:ns NR:ns ## COG: L197116 COG3600 # Protein_GI_number: 15673914 # Func_class: S Function unknown # Function: Uncharacterized phage-associated protein # Organism: Lactococcus lactis # 4 150 151 300 306 118 46.0 6e-27 MYNVFKVVNWFRLKNVEELVSEDVNAEPLTQMKVMKLLYYAQATFLVKYGQRLFDSDILA WKFGPVVAEVHDKYRGRRIIVESISYEAYQDFSTLESDKRASQVLNAVYIAFGSYSASTL MKKTHTEMPWKSTSQGAKIEDDKMKEFYKETGLDTEISEKYDHVIMRKLYEENREAMDIL KYK >gi|313656766|gb|GL545251.1| GENE 988 952374 - 952706 324 110 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 102 1 102 391 101 43.0 3e-22 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDRYGYKALF >gi|313656766|gb|GL545251.1| GENE 989 952684 - 953556 853 290 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 290 103 391 391 276 46.0 3e-74 MVIKLYSKGVTTREIANLIEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYL DTTYIPLRRETFEREAVYIAIGIKPNGHKEVIDYYIAPSENIEVWTALLQNMKSRGLKQV ELFLSDGVVGMKAALAKTYPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANK AAAVDVLHAFYAKWNKSYNRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIK RKAKPKAEFPTEQSLDTFIGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 990 953949 - 954311 573 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855643|ref|ZP_04645943.1| ribosomal protein L7/L12 [Lactobacillus jensenii 269-3] # 1 120 1 120 120 225 100 6e-57 MALDTEKIIEELKGATILELNDLVKAIEDEFDVTAAAPVAAAGAAAGAAAKTEFDVELTE AGQEKVKVIKAVREITGLGLKDSKDLVDGAPKVIKEGVSEDEANDIKAKLEEVGATVTVK >gi|313656766|gb|GL545251.1| GENE 991 954362 - 954889 838 175 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525593|ref|ZP_03955642.1| 50S ribosomal protein L10 [Lactobacillus jensenii JV-V16] # 1 172 1 172 172 327 99 1e-87 MEVNQLSKAAIAAKEKLVDAFAEELKAAKAILVIDYLGLTVDEVTNMRKELRENDVKMKV IKNTYLRRAAKKAGIEGLEDTFVGPTAVIYTDNADDVTEPARIVSKYEDDFDVINIKGGM LEGKLTSKEEIKELASIPGREGLLSMLVSVLQAPVRDFAYAVKAVAESKDEDSAE >gi|313656766|gb|GL545251.1| GENE 992 955068 - 955856 213 262 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 11 251 64 318 319 86 25 2e-17 MYEIADQYNGNFKGIAISCPGKIDVDNKIIHFGGSLPFLDGANIQKLFGDKYGVPVGVEN DGKAAALAEMWLGALKDVVSGEMLTLGSEVVGGIVVGGQLIHGAHFQAGELSFMRYDMNC ADWSGFTGQKGSAVNMIKRVNEALGNSNLEDGQKAFEAINAGNTQAVQIFEEYCADVANI ILSVQAVVDGERVVIAGGISAQDIVIETIKKQYQALANKFYRVKNELTMPEIVRAKFEND ANIYGALYALLLDINGQSEEAK >gi|313656766|gb|GL545251.1| GENE 993 956085 - 957101 739 338 aa, chain - ## HITS:1 COG:CAC1488 KEGG:ns NR:ns ## COG: CAC1488 COG0463 # Protein_GI_number: 15894767 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 3 338 2 338 338 271 41.0 1e-72 MKKILSIIVPCYNSEDYLEKCVNSLVAIQNDVEIILIDDGSKDKTPELIDQFAQKYPKQI IPIHQANAGHGGALNTGFSVASGEYIKVVDSDDWVDYGAYLEIVTFLKHLIQKKQSVDLL ISNYVYDKVGAKHKKVVHFPHLPKNKFFGWDDVKLYLGQYLMMHSLIYRREVITKRAHLQ LPTHVSYDDNIYVFEPLRHVRKMYYLDVDFYHYFIGREDQSVNENVMLKKIDQQLLINKR MIKFFAEHIDPNTSLGRYMKFYLEIITAVSSIILIRGKKPEYIEKKDALWQYIKIKNTKL YYSLKRRPLGICMNLPTKLGNKIASGFYVVAHLVYGFN >gi|313656766|gb|GL545251.1| GENE 994 957280 - 957972 1163 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855647|ref|ZP_04645947.1| ribosomal protein L1 [Lactobacillus jensenii 269-3] # 1 230 1 230 230 452 100 1e-125 MPKHGKQYLEAAKKVERNKFYSVAEAMKLVKETSYAKFDATVEVAFNLSVDPKQADQQIR GALVLPNGTGKTQKVIVFAEGPQAEQAKEAGADEVGSDELVEKVQNGYLDFDVVIATPMM MAKVGRLGRVLGPKGLMPNPKTGTVTMDVKKAVENVKAGQVEYRVDKQGLIHAPIGKVSF EDEKLAENFNALRDVILHARPASAKGQYVKSVAVSATFGPGIHLDPLNMN >gi|313656766|gb|GL545251.1| GENE 995 958070 - 958495 693 141 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525597|ref|ZP_03955646.1| 50S ribosomal protein L11 [Lactobacillus jensenii JV-V16] # 1 141 1 141 141 271 99 7e-71 MAKKVINVVKLQIPAGAATPAPPVGPALGQAGINIVGFTKDFNARTADQKGMIIPVVITV YEDRSFEFITKTPPAAVLLKKAAKVEKGSGEPNTKKVAKVTKAQVKEIAETKMQDLNAAD VEAAMRMVEGTARSMGFEVED >gi|313656766|gb|GL545251.1| GENE 996 958626 - 959087 633 153 aa, chain - ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 1 148 29 177 178 152 53.0 3e-37 MGMQDFIFRVVTPQETKVETVRGKKQEVEEKIFPGYVLVEMVMTDESWFIVRNTPNVTGF VGSHGGGSKPSPLLDDEIARILENQGVEAKKPDIDFEIGETVTITEGAFDGMVGKITDIQ EDKEKIFVSVDMFGRATTAELDYDQVKKFDGNE >gi|313656766|gb|GL545251.1| GENE 997 959280 - 959450 184 56 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1567 NR:ns ## KEGG: LDBND_1567 # Name: secE # Def: protein translocase subunit SecE/sec61 gamma # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Protein export [PATH:lde03060]; Bacterial secretion system [PATH:lde03070] # 1 56 1 56 56 77 67.0 1e-13 MFKFFKSVGHEMKKVTWPTAKQNRRDTTTVIVTSVLFALFLGALDWAFSTLTQMTF >gi|313656766|gb|GL545251.1| GENE 998 959453 - 959602 257 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525600|ref|ZP_03955649.1| ribosomal protein L33 [Lactobacillus jensenii JV-V16] # 1 49 1 49 49 103 100 2e-20 MAVKKAALACTICGSRNYSITASKTRTERLEIKKFCKHCKKMTLHKETR >gi|313656766|gb|GL545251.1| GENE 999 959749 - 959967 245 72 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_01740 NR:ns ## KEGG: LAC30SC_01740 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 72 1 72 72 105 83.0 7e-22 MTEDVLKTSLLDRHMKEVFDWSDSNVPVRDAIWNYFMEKNGKNTLKTEEDMLPFLKDSDD KIEAFVNENLKK >gi|313656766|gb|GL545251.1| GENE 1000 960024 - 960575 378 183 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00352 NR:ns ## KEGG: LCRIS_00352 # Name: not_defined # Def: DNA-directed RNA polymerase sigma factor, sigma H # Organism: L.crispatus # Pathway: not_defined # 5 178 5 177 181 123 35.0 4e-27 MKTIENLIQRVKENDDLALLLLFERYKPMITAVTKRYFIRNLDENDWNQEALIVCYESAG LYDFERGTTFGTFFRLRLQNRAKNLLRFELAKRRALYASAISYEALKERGQICDPSYEQA SLPTSIELSNFIQTLSQLEVIALTVITGLVDLDQASMTAQVPPETIKRAIARTRIKMRAY FLR >gi|313656766|gb|GL545251.1| GENE 1001 960679 - 961434 568 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 1 249 1 249 255 223 47 2e-56 MTSVKGDFVFGRHAGIDFLKNESADKINKVFLQNGVQTEFANQVYGLAKKKHLIVQEVPK NKLDKLVPDANHQGLVLAISSFEYADLDDLVEKIADKENPFLLMLDSIEDPHNLGSILRS ADATGVDGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTA MEGQDYRYWDTKGKCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY QMLNNKMPLSK >gi|313656766|gb|GL545251.1| GENE 1002 961421 - 961864 306 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 14 145 10 141 141 122 47 5e-26 MGKIRQLFEKDINPDTLNGQTLAYLGDAVYEIYIRRHLLKGGVVRPQVLQRDATHYVSAK AQAALISKMQDDQILTEAELATFKRGRNAKSHTHAKNTKIATYKLSTGFEAIFGYLELLD KHDRIEELAIWCIKQVEAGGIDSYDFS >gi|313656766|gb|GL545251.1| GENE 1003 961916 - 963277 1249 453 aa, chain - ## HITS:1 COG:SPy1941 KEGG:ns NR:ns ## COG: SPy1941 COG0215 # Protein_GI_number: 15675744 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 444 2 436 447 461 54.0 1e-129 MKIYNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYKGFDV KYVSNFTDVDDKMINEARAEGITVPELAKRYINAFMEDTTALNIEPATLHPRATEEIKDI IAFIKTLIEKGFAYEVDGDVYYRAKKFTGYGKLSDQDIASLEEGASQHVNEAEFAKKEDP IDFALWKKQKQSDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQDLEFPHHEN EIAQSEAKTGKKFVNYWMHNGFVTVGKDEQKMSKSLHNFVTVHDILKRVDPQVLRFFMAS VQYRKPINYSEENLKQAAIILDKIKNTVLNVQDKLKETNSQENQDLTIAIEDSENRFKEA MDDDFNVQNALSVVYDLLPVINKNISEDTSDLSALRKFLQHLEKWLAIFGVDIDKLTTEK VSDDDAEIEELVKSVMRLERIKILQQVILFVIN >gi|313656766|gb|GL545251.1| GENE 1004 963372 - 963578 192 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260664902|ref|ZP_05865753.1| ## NR: gi|260664902|ref|ZP_05865753.1| predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] # 1 68 1 68 68 85 100.0 1e-15 MYRIANFKTYVIRLSWWNVLICIPYVLLLVDYLIWSEWVTIIANILIVIFSTLGIYTSLN VKIKNLTN >gi|313656766|gb|GL545251.1| GENE 1005 963833 - 965332 1818 499 aa, chain - ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 4 491 5 488 491 555 58.0 1e-158 MAKQKIRVRYAPSPTGHLHIGNARTALFNFLFARHNKGTLVLRIEDTDTARNVEGGSKSQ MENLHWLGIDWDEGPDKGGEYGPYRQSERKEIYNKLIKQLLDEGKAYYSYMTEEELEAQR EEQRAMGIAPHYVYEYQDMTADEIKEAQAKAEAKGLKPVVRIHIPKGKTYEWDDIVKGHI SFESDTIGGDFVIQKRDGMPTYNFAVVVDDHLMEISHVLRGDDHIANTPKQLVVYEAFGW EPPKFGHMTLIINAATGKKLSKRDESVLQFIEQYRDLGYLPEAMFNFITLLGWSPVGESE IFSQRQLIKDFDPKRLSKSPAAFDEKKLEWVNNQYVKTANRDELLDLALNNLQEAGLVDK DITPEKMEWVRQLVNIYSVQMSYTKQIVDFSHIFFEDKQALTEEEVEEIKNDEGRVVIEE FRKQLNLVPRYTAVQVMNAIQATRKVTGVKGRKLFMPIRIAATGSMVGPGIGEAIELMGK DKVEHNIDLTLSEMTKQGL >gi|313656766|gb|GL545251.1| GENE 1006 965407 - 966783 1173 458 aa, chain - ## HITS:1 COG:L0303 KEGG:ns NR:ns ## COG: L0303 COG1066 # Protein_GI_number: 15674046 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Lactococcus lactis # 1 458 1 453 453 536 57.0 1e-152 MAKAQTRYKCRSCGYISASYLGRCPNCGSWNQFEKEVQEVRKTSTKQTASRLMPTTGLHE PVTLEKVKAEKETRIPTKFSELNRVLGGGIVTGSLVLIGGDPGIGKSTLMLQIMSTLANE HKVLYVSGEESASQIKLRADRLGVGDSGMYLYPETNMSNIRDQISDLKPDFVVIDSIQTM NEPSLDSMVGSAAQVREVTSELMHIAKIDQITVFIIGHVTKEGAIAGPKILEHMVDTVLY FEGDEHHAYRILHSVKNRFGAANEIGMFEMENSGLKEVTNPSSIFLDERLPNSTGSCVVV SLEGTRPILAEVQALVAPTAFGYAKRTTSGIDYNKAALLLAVLEKRGNLMLQNQDAYLTT TGGIKLSEPAIDLAIVMAIGSSYKDMEIPSEDCFVGEVGLTGEVRRVNKIESRIAEAEKI GFKRIFIPKFNMKASFANRKIEVVPVSTVAQALKLVFG >gi|313656766|gb|GL545251.1| GENE 1007 966797 - 967336 525 179 aa, chain - ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 177 1 148 150 134 43.0 1e-31 MKVRGFEICEKYKDADIKLPKRQTLASAGYDIEAAEDCVIPSIWRLNFVRIFRLIRNGHE LNERDYEYADQILQPIMVHTGVKAYMPNDEMLIIANRSSNTVKRRLCLPNSIGVVDSDYY NNPNNEGELMVQLINYGVRPIHIKKGERVAQGIFMKYLRTDDDAPVSRQRIGGFGSTKK >gi|313656766|gb|GL545251.1| GENE 1008 967535 - 967726 182 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855660|ref|ZP_04645960.1| ## NR: gi|238855660|ref|ZP_04645960.1| hypothetical protein LACJE0001_1633 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_2807 [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1633 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_2807 [Lactobacillus jensenii 208-1] # 1 63 34 96 96 114 100.0 3e-24 MAIDHIFINPEIKSNLVNELIKFALSYARANHLKVMPLGPTILAYFQENQLSLANLVYKP SLR >gi|313656766|gb|GL545251.1| GENE 1009 967796 - 968350 707 184 aa, chain + ## HITS:1 COG:SP0281 KEGG:ns NR:ns ## COG: SP0281 COG3579 # Protein_GI_number: 15900215 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pneumoniae TIGR4 # 5 182 4 181 444 193 53.0 2e-49 MAKEISQAAIENFKADFASRKDARIAARAAQTNGIFKASQDTQTQIDLNPTFSIEIETGK VADQKASGRCWMFSALNTMRHPLQKKFKIKGFELSQNYTNFWDKFEKSNWFFENVIATAN QDLGDRKVSFLFATPQQDGGQWDMLCGLIEKYGIVPKSVYPETFSATSSTALNDTLNTLL KKMV >gi|313656766|gb|GL545251.1| GENE 1010 968413 - 969144 793 243 aa, chain + ## HITS:1 COG:SP0281 KEGG:ns NR:ns ## COG: SP0281 COG3579 # Protein_GI_number: 15900215 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pneumoniae TIGR4 # 1 240 206 443 444 275 55.0 6e-74 MLNEVFRVLAISLGVPPKKFDFEYRDDDKNYHIDRDITPQEFFKKYVGWNLSDYISTINA PTTDKPFHKVFSVEYLGNVVGGRQVRHLNLPIDEMKELIINQLKSGEVVWFGSNVVKDSE RRAGLLDTKLYRRDELFDVDFSMSKAEKLDTGESLMDHAMVITGVDLVDGKPTKWKIENS WGEKAGFKGYFVMSDDWFNAFVYQAVINKKFLSDELKHAFEDGSKNPIQLLPWDPMGALA MEF >gi|313656766|gb|GL545251.1| GENE 1011 969194 - 970129 1057 311 aa, chain - ## HITS:1 COG:FN1603_1 KEGG:ns NR:ns ## COG: FN1603_1 COG4639 # Protein_GI_number: 19704924 # Func_class: R General function prediction only # Function: Predicted kinase # Organism: Fusobacterium nucleatum # 1 183 1 174 174 82 27.0 1e-15 MRKIFLLRGAPGSGKSSFIARHHLQPYAISRDSIRLLLADLTVYYEEEADYLHQVIPRHV NVRTEQLVDNLVEHKMSYGETVIVDGTHIAPSAIEHFKPLVDKYRYELFVVDLMQNNTLD NLLKRNQTRMHYDWVKPEVVKQMFNTYKAHPEVPEWAKMITPNQMERALSQRESNLDHFE HVIAVPDGVKEEDFPHVHISNFYFSFNDKFTEKYGTYRNVISIAKTREEAIEEFKLPYFV FKFHHKHFLISAYPIRNEMLDPIRKVKGVWTYSTGLYNLADFVKEFPENKQQHVHQFNLS KLDNSRLLHIW >gi|313656766|gb|GL545251.1| GENE 1012 970214 - 970891 639 225 aa, chain - ## HITS:1 COG:lin2308 KEGG:ns NR:ns ## COG: lin2308 COG0588 # Protein_GI_number: 16801372 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Listeria innocua # 2 224 1 227 229 208 44.0 6e-54 MVKLVLVRHGESIANAKNIFTGWNDISLSKRGIDEAKVAGELIKDIPDFTPTHIHTSLLS RAIMTANIISEVNDFLYLPITKTWRLNERHYGALRGINKDKAREIFGVEQIKNWRRGFDE VPPLAQDSLNDRRYNMIDPHILPKAESLHQTQKRLMPYYHEQVASQLIQGKDQLIVAHGS SLRALIKKLESIDNHDIVNLEVPNAEPIVYTMNDELKIIDKKILS >gi|313656766|gb|GL545251.1| GENE 1013 970902 - 971069 78 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855664|ref|ZP_04645964.1| ## NR: gi|238855664|ref|ZP_04645964.1| hypothetical protein LACJE0001_1637 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_2811 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_01425 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1637 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_01425 [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_2811 [Lactobacillus jensenii 208-1] # 1 55 1 55 55 85 100.0 1e-15 MENKYFLAAVLLIMGIYDMSFYYNRRHQPNNQRGLKAYLIFGIILFIGGFYALFR >gi|313656766|gb|GL545251.1| GENE 1014 971071 - 971247 154 58 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00338 NR:ns ## KEGG: LCRIS_00338 # Name: not_defined # Def: cation efflux protein # Organism: L.crispatus # Pathway: not_defined # 1 53 239 291 299 67 62.0 3e-10 MMDAHINVTEKMSVVQLEQLYMKIGHELKEKLGINHVTLQAEYQRGIKESMIVLNKDD >gi|313656766|gb|GL545251.1| GENE 1015 971325 - 971624 383 99 aa, chain - ## HITS:1 COG:PH0896 KEGG:ns NR:ns ## COG: PH0896 COG1230 # Protein_GI_number: 14590752 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Pyrococcus horikoshii # 1 99 114 212 295 88 41.0 2e-18 MLIIAIIGLIANGISMLVMKSDSAHNLNVRSTFLHMMSDALSSVAVVIGAAMIYFWKSSL IDPLMTLLVSIFVMFEAYKITRKAANILMESNPNVDLDE >gi|313656766|gb|GL545251.1| GENE 1016 971967 - 972647 927 226 aa, chain - ## HITS:1 COG:CAC0167 KEGG:ns NR:ns ## COG: CAC0167 COG0406 # Protein_GI_number: 15893461 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Clostridium acetobutylicum # 6 220 7 217 228 105 33.0 6e-23 MTTEVYLIRHGETMFNQLNKVQGWADSPLTIKGINDLKKTAEALSQIHFDNMYSSDLKRA IDTVHLMKNANEVSEIGKIKKLPEFREVFFGSFEGDDIDQTWECISQKAGLGKERDVQKI INQLGLYKFREATKAADPRHLAENYDELNTRMIRAIKKLREETVNENRVLLVSHGDFIKT LAIKYWNKSDGIHDIAFPDNGSITRGILSDDGKFEIVDYNIKAEDF >gi|313656766|gb|GL545251.1| GENE 1017 972713 - 973465 625 250 aa, chain - ## HITS:1 COG:RSp1268 KEGG:ns NR:ns ## COG: RSp1268 COG0730 # Protein_GI_number: 17549487 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Ralstonia solanacearum # 10 249 7 249 252 92 26.0 8e-19 MVGEILVSIFLIGAGILAGIVSVVSSMASLVSYPALLLAGVAPVYANVTNTAALIFTGLG SAVSSMKELKSSWHKYIKYIILISIGAAIGSFLVVIFPRKIFEKLVPFFVFLSAFLFLMS GKKSTYQRKANNQFLAKIEMFAAGVYTGYFGAAAGILMLIALLSVSNDDFVVVNAVKNVI GSLGNLIALIIFLFTSKVYWIKAIPLAIGLFIGGFLGQMIIKYLPVKAVRIITFIFAIFL AVYLGWQAYR >gi|313656766|gb|GL545251.1| GENE 1018 973559 - 974131 855 190 aa, chain + ## HITS:1 COG:SP0804 KEGG:ns NR:ns ## COG: SP0804 COG0693 # Protein_GI_number: 15900697 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Streptococcus pneumoniae TIGR4 # 1 183 1 176 184 144 44.0 8e-35 MKKVAVIFADGCEEVEGLSQVDVLRRLGLQADMVGLTSKEVLGDHKIKLTCDKVVDDSLL DYDLVSFPGGLAGAKNLAASQKLAEIMQKRHQAGKWIAAMCAAPMALGKYGLLADTDFTC YPGFEDEISIDCPTGRFHEDIVVTDQKQKVITSRGPATAWAFSYALANALGVETAELEKG MLYNYLKENI >gi|313656766|gb|GL545251.1| GENE 1019 974266 - 975441 1154 391 aa, chain + ## HITS:1 COG:SMb20071 KEGG:ns NR:ns ## COG: SMb20071 COG2814 # Protein_GI_number: 16263819 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Sinorhizobium meliloti # 10 361 8 353 397 149 28.0 8e-36 MRYRIQAILFVLVAFMLGCNEYMIVGVLPSIYQDLKIPLSLLGLLVTLFAMVYSICTPII SIVCNRFKRHNVLFILLTIFLLANTWTALAPNFISILLSRILSGSTAGAIISITIIMASF IAPPAKRASLISWVFAGFSIANVAGVPIGNKIAELGSWRNSFWMVTILTIFIFAALIVYA PRDTPQLNIKNDTSKKSHQGGAAFIKDKRTILTCLFIVFVCAAQFSYYTYITKILTESMG FKTELLSPLLFILGFVSIIGNKIGGYIAGRGNMKDIPWLYLFMAIALVVTGFTMQLRIFA FILIALICIVNCSYGSSVTVFLLDIASHSYPQALDLASSLNPVFSNVGIAVGSLVAAQAI NFISIAQIVFISAIFAFIAFILAMTIKYLIR >gi|313656766|gb|GL545251.1| GENE 1020 975880 - 976074 246 64 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_07745 NR:ns ## KEGG: LAC30SC_07745 # Name: not_defined # Def: acetyltransferase # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 60 114 172 172 69 55.0 4e-11 MSNLISAMRVKGIENYRIDTAPVNKIVQRIAEKNGFVYRGMIEVDNEPVDPERVAYELNL RKYE >gi|313656766|gb|GL545251.1| GENE 1021 976169 - 977380 1014 403 aa, chain + ## HITS:1 COG:AGl1145 KEGG:ns NR:ns ## COG: AGl1145 COG2814 # Protein_GI_number: 15890690 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 18 395 46 415 431 147 25.0 5e-35 MQFKGDRTLKYKLQSIMFVLVAFMLGCNEYMVVAVLENISADLKIQISLLGILVTVFAFV YSICTPIISIVFAHVKRHLVLFGLLVVFIIANTLTALAPNFYVLIISRILSGATAGSIIS ITIIMTNFIAPAEKRAGLISWVYSGAGIANLLGVPVGNKIAEIFSWRYSFAIITILSVIV LLLLISLAPRNTPQITAKNTSKNTESIHNTDKQDFIKDIRVILTCAFIVFACAAQFSYYT YITKLLTKYMKFSPASVSTLLFILGVVAIIGTKLGGFFADHGNMKNMPYLYLFMTPALII VGLTMHIKILAFVLVALMVIVSNSFGSSVTVYLLDIANNHYPDALDLASSLTPVFSNVGI AIGSLASSLAIPYLTLGHVVFVSAVFAALSLITTVLQLKQKHI >gi|313656766|gb|GL545251.1| GENE 1022 977549 - 978727 1005 392 aa, chain + ## HITS:1 COG:AGl1145 KEGG:ns NR:ns ## COG: AGl1145 COG2814 # Protein_GI_number: 15890690 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 382 53 415 431 144 25.0 3e-34 MLGCNEYMIVGVLKDIHSDMGTPLATLGILVTLFALVYSFCTPFISLLSARFKRHNVLFG LLTIFLVANTWTAFAPNFIQLLLSRILAGATAGSIISITVVMASFIAPPEKKAGLISWVF AGFSIANVAGVPIGNTIAQVFSWRDSFWMVTILTIIIFALLFIYAPKDTPQSQANTPEEA AKISSDRKKYIVHPITVTNALFIICVTGAQYSYYTYITEIITKYLHFTDSVLSILLFILG IVSIFGNKLGGYYADRGNMQDIPFLYVIMPVSLVLIGLLINLTNPHNFPLAFGIIAFILI AVVCIVNVSYGANVTVLFLDLANDEFPGALDLSSTFNPVFSNLGIAVGSFVSSIAIGTGL FNIGNIVFISAIFGFCSLALVLRLKKLTKEDI >gi|313656766|gb|GL545251.1| GENE 1023 979073 - 979420 80 115 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0944 NR:ns ## KEGG: LDBND_0944 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 112 1 113 424 160 69.0 2e-38 MSSYNDCIKFSLDIQDPNITFNAHFFKLINGIKYKVFQATLIQPACPFCGSVNLIHNGHL QTNIRFITSNASSPVIIRLNKQRVLCRDCNTRSMAKSKLVNKYCSISNPASFCFN >gi|313656766|gb|GL545251.1| GENE 1024 979431 - 980336 678 301 aa, chain + ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 286 130 420 428 167 34.0 3e-41 MTSIARENNLSVNTVQRVLASCSHRFIDNYNYLPEHLAFDEFKGVDKKLHFICLDGQKHE VVQILRNRYKKSLLKYFGKFSPSARANVKTVSMDLNFYYQNIVRACFPNAEIIIDRFHMV QMLTRSFNSLRVLVMKSFDKRARQYQLLKSPWKLYLKSFVDLDKIHPHYNWHFKDYLTQE QVVMEGISCDPRLDNAYNLMQDFMAALKARDTNSLKEIINSKAEVGTLMHKTLLTFKHNL RAVLNGARFSYSNGCLEGFNRKIKQIERTAYGYSNYINLLTRIRLEENKVKEKEPSNLYI A >gi|313656766|gb|GL545251.1| GENE 1025 980485 - 980880 668 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855101|ref|ZP_04645429.1| ribosomal protein S9 [Lactobacillus jensenii 269-3] # 1 131 1 131 131 261 100 5e-68 MAQQAAYAGTGRRKNSVARVRLVPGNGKITVNKKDVTDYIPFPNLVQDLKQPLALTETEG QYDVVVNVNGGGFSGQAGAIRHGIARALLEVDPDFRGPLKKAGLLTRDPRMKERKKPGLK KARKASQFSKR >gi|313656766|gb|GL545251.1| GENE 1026 980897 - 981367 799 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525626|ref|ZP_03955675.1| 50S ribosomal protein L13 [Lactobacillus jensenii JV-V16] # 1 156 1 156 156 312 99 4e-83 MSNCKKTEEFKLRTTPLAKTSEIERKWYVIDATDIALGRLSTVVATILRGKNKPQYTPNV DTGDNVIIINAAKLKLTGKKATDKIYYHHSDFRGGLKAVSAGELLAKNPVRLVELSVKGM LPKNTLGHQEFLKMHVYAGAEHKHEAQKPEVLEINK >gi|313656766|gb|GL545251.1| GENE 1027 981437 - 981976 597 179 aa, chain - ## HITS:1 COG:lin2747 KEGG:ns NR:ns ## COG: lin2747 COG0101 # Protein_GI_number: 16801808 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Listeria innocua # 1 166 83 248 248 150 44.0 1e-36 MMPTDIVFKEASIVDESFHVQYSTKGKWYRYIVNQDRFVDPFKRFYTGHYPYKLDVSKMQ EAASDLLGEHDFTSFAASGGQIIDKVRTIFYVKIWQKPEENEIVFDFIGNGFLYNMVRIM VGALLEIGNGRRPIHDLERVILAKDRQEVRNTAPASGLYLYHVFYEEVPEKYRLDKKNN >gi|313656766|gb|GL545251.1| GENE 1028 981973 - 982224 261 83 aa, chain - ## HITS:1 COG:SP1599 KEGG:ns NR:ns ## COG: SP1599 COG0101 # Protein_GI_number: 15901439 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 68 1 68 249 98 61.0 2e-21 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMSKGKRIVVHGSGRTDAGVHALG QVIHFDFPNDNIPANKMVWPLIL >gi|313656766|gb|GL545251.1| GENE 1029 982224 - 983021 505 265 aa, chain - ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 264 2 265 266 251 49.0 8e-67 MSKIIIGRFIPGDSVVHKMDSRGKLIFTFLFIFIIFLANNWQSYLVLLLASLLAIVATKI SLKFFWDGIKPLLGLIFFTSLLQLFFTSGGEVFWKWGIFSITSSGLINSIYIFLRFTLII LMSTVMTLTTAPLAIADAMEWLLKPLKYLHVPVAEIALIMSIALRFVPTLFDQTIKIMNA QRSRGADFNDGGLIKRIKAVVPLLVPLFINSLEVAIDLSTAMEARGYRGSEGRSKYRVLE WSKYDLINLGYFVLLIILLLSFRSK >gi|313656766|gb|GL545251.1| GENE 1030 983014 - 983877 357 287 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 5 273 132 392 398 142 33 6e-32 MSIKFEKVDYIYSPKTPFEKKALNNISFELKEHSFVAIIGHTGSGKSTLMQHFNALLKPS AGQIKIAGFTLNAQTSNKNLKRLREKVSLVFQFPEAQLFESTVLKDIEYGPKNFGYSEVE ANELAKKWLKKVGLPSSVGDRSPFDLSGGQMRRVAIAGVMAYEPDILCLDEPAAGLDPQG KREMFALFKQYQKEGHTVILVTHNMDDVAEYADDVLVLEKGKLLKHATPEDIFSDAQWLS EHHLAMPTANLFAEKLVENDLSIDVNPLTIDKLANEIEEKLVKENNE >gi|313656766|gb|GL545251.1| GENE 1031 983853 - 984704 263 283 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 22 232 38 250 329 105 33 5e-21 MNKIIEIKNLTFKYPNTESLILDNLSFSVKENSWTTLIGHNGSGKSTIARLLIGLLAAEM DKKDPYFIKIDGMELNEKNIWKIRDKIGIVFQNPDNQFVGSTVEDDVAFGLENKGISRGK MLALVNEALNQVGMAEFNESEPAQLSGGQKQRVAIAGILAVKPKIIILDEATSMLDPEGK KSILNLIKKIKQQYNLTVISITHDLEEVEKSDEVLVLDSGKIVLQDNPDAIFNHAELLQK IGLGLPFGYQLADKLRKKGFLISKNANTQEKLVKEICQLNLKK >gi|313656766|gb|GL545251.1| GENE 1032 984872 - 985255 620 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525631|ref|ZP_03955680.1| 50S ribosomal protein L17 [Lactobacillus jensenii JV-V16] # 1 127 1 127 127 243 100 2e-62 MAYRKLGRDSAHRKAMLREMTTQLIINERIVTTEARAKEIRKTAERMITLGKRGDLSARR QAAAFVRNEIADVKQENDAVVVKSALQKLFSDIAPRYKDRNGGYTRIMKLATARRGDGAP MVILELV >gi|313656766|gb|GL545251.1| GENE 1033 985283 - 986224 1110 313 aa, chain - ## HITS:1 COG:BH0162 KEGG:ns NR:ns ## COG: BH0162 COG0202 # Protein_GI_number: 15612725 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus halodurans # 1 313 1 314 314 385 65.0 1e-107 MIEFEKPNITVVDQEDAYGKFVVEPLERGFGTTLGNSLRRVLLTSIPGTALSYIQIDGVL HEFSTVPGVREDVTKIVLNLKKLELKSIADEEKIVELDVEGPATVTAGDLKVDSEVTVLN PDQYICTVAEGGHLHMQIAVKNGRGYVPASENKTDDMPIGVIPVDSLFSPIKKVNYQVES TRVGKKDDYDKLTLEVWTDGSITPSDALSFASKILIEHFKVFKFSDAQTDFGGEVMVEKE DDKKERQLEMTIEELDLSVRSYNCLKRAGINTLQELTDKSESDMMRVRNLGRKSLEEVKN KLADLGLSLRHED >gi|313656766|gb|GL545251.1| GENE 1034 986270 - 986659 652 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525633|ref|ZP_03955682.1| ribosomal protein S11 [Lactobacillus jensenii JV-V16] # 1 129 1 129 129 255 100 4e-66 MPAKKNTRKRRVKKHVESGVAHIHSTFNNTLVMITDVQGNAVAWSSAGALGFKGSRKSTP FAAQMAAEAAAKASMDQGMKHVEVSVKGPGAGREAAIRSLQATGLEITAIRDVTPVPHNG SRPPKRRRV >gi|313656766|gb|GL545251.1| GENE 1035 986689 - 987039 586 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525634|ref|ZP_03955683.1| 30S ribosomal protein S13 [Lactobacillus jensenii JV-V16] # 1 116 1 116 116 230 100 2e-58 MARIAGVDLPREKRIVVALTYIYGIGEPTAKKICADAGVSEDIRSKDLTPEDQEKLRAEV DKYRVEGDLRREISMNIKRLVDIGSYRGVRHRRGLPVRGQNTKNNARTRKGSKRSR >gi|313656766|gb|GL545251.1| GENE 1036 987066 - 987182 211 38 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525635|ref|ZP_03955684.1| 50S ribosomal protein L36 [Lactobacillus jensenii JV-V16] # 1 38 1 38 38 85 100 5e-15 MKVRPSVKPMCEHCKVIKRNGRVMVICPANPKHKQRQG >gi|313656766|gb|GL545251.1| GENE 1037 987197 - 987418 299 73 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 71 1 71 72 119 83 3e-25 MAKDDVIEVEGKVVDTLPNAMFKVELENGATILAHVSGKIRMHYIRILPGDKVTVELSPY DLTKGRITYRFIK >gi|313656766|gb|GL545251.1| GENE 1038 987490 - 988143 725 217 aa, chain - ## HITS:1 COG:BH0155 KEGG:ns NR:ns ## COG: BH0155 COG0563 # Protein_GI_number: 15612718 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Bacillus halodurans # 2 214 1 212 217 239 57.0 3e-63 MINLILLGLPGAGKGTVSERIVDKYKLAHISTGDMFREAMANETPVGLEAKSYIDKGNLV PDEVTAKLVEERLAKPDTNNGFILDGFPRTTAQAEMLEDITKRLNKPLTNVIALDVEESV LVDRLSARFMCKACGATYNKFSKKPKVEGTCDRCGGHEFYQREDDKPEVVRNRLQVNEKM NAPLRDFYQQKGLLSVVNGEQSPEKVFEDTDAILGKD >gi|313656766|gb|GL545251.1| GENE 1039 988157 - 989158 1006 333 aa, chain - ## HITS:1 COG:L0333 KEGG:ns NR:ns ## COG: L0333 COG0201 # Protein_GI_number: 15674060 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecY # Organism: Lactococcus lactis # 3 332 101 432 439 317 50.0 2e-86 MGKTGEVGRRKTNQVTRYLTLVVAFIQSIGITLGFNVLTQMGLVKSQTPQTYIQIAIIMT AGTFLLTWLGDEITDKGLGNGVSVIIFAGIISRLPNGIAQIFKEDVSNASSSDRWKGILF FVAIIIAILVITKVVTWVEQAIRRVPIQYTRRAAVSGSESFLPLKVNVSGVIPVIFASSF IITPSTILMAFQSHQGEQWYQILTQIFSLQTTPGAVIYTLLIVLFTFFYAFVQVNPEKLS ENLQKQSAYIPSVWPGKDTQDFVSKLLMRLSTVGSVYLGLVALLPQLATNIWGLPSSIGL GGTSLLIVIGVVLELSRQVNGLLMKREYVGFIR >gi|313656766|gb|GL545251.1| GENE 1040 989113 - 989448 242 111 aa, chain - ## HITS:1 COG:SPy0073 KEGG:ns NR:ns ## COG: SPy0073 COG0201 # Protein_GI_number: 15674307 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecY # Organism: Streptococcus pyogenes M1 GAS # 5 109 6 108 434 127 61.0 5e-30 MFSTLKNAFKDKEIRNKIFFTLFILLLYRIGANIAVPGVNAKAINQVAQTGLVPMLDTVS GGGLDNYSIFSLGVSPYITAQIVIQLLQMDIVPKLVEWGKQVKLVVGRRIR >gi|313656766|gb|GL545251.1| GENE 1041 989448 - 989888 734 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525639|ref|ZP_03955688.1| 50S ribosomal protein L15 [Lactobacillus jensenii JV-V16] # 1 146 1 146 146 287 100 1e-75 MKLHELKPAEGSRRSRKRVGRGTSSGYGKTSGRGQKGQLARQGGHTRPGFEGGQMPLFRT MPKRGFKNINRKEYAVINLDDLNKFENGSEVTIADLKAKGLVKKELSGVKLLANGELKVK VTVKVNKASKAAEEAVNAAGGSVEVI >gi|313656766|gb|GL545251.1| GENE 1042 989911 - 990096 294 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525640|ref|ZP_03955689.1| 50S ribosomal protein L30 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 117 100 1e-24 MTDLKITLIRSAAHRLPNQRKVVKALGLGRINSSVVLPDNAATRGALMKIAHLISVEEVN K >gi|313656766|gb|GL545251.1| GENE 1043 990107 - 990622 848 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525641|ref|ZP_03955690.1| 30S ribosomal protein S5 [Lactobacillus jensenii JV-V16] # 1 171 1 171 171 331 100 7e-89 MANRNDSRKDRRPKDEIEDQLVAVNRITKVVKGGRRMRFAALVVVGDKKGHVGFGTGKAQ EVPEAIRKAVEAGKKNMISVPTVGTTIPHEVIGHFGSGNILLKPAEAGSGVAAGGAVRIV MDMAGIADITSKSLGSNTPINVVRATIDGLKKLKTREDVLKLRESAKSLQD >gi|313656766|gb|GL545251.1| GENE 1044 990640 - 990999 580 119 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525642|ref|ZP_03955691.1| 50S ribosomal protein L18 [Lactobacillus jensenii JV-V16] # 1 119 1 119 119 228 99 9e-58 MISKPDKNKLRLKRHKRIRGKISGTAERPRLSIFRSNKNIYAQIIDDVAGVTLASASTLD KSVSAEGTKLEQAQAVGKAIAEAAKKNNITTVVFDRSGYLYHGRIQALADAARENGLEF >gi|313656766|gb|GL545251.1| GENE 1045 991022 - 991336 381 104 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239632450|ref|ZP_04675481.1| 50S ribosomal protein L6 [Lactobacillus jensenii 1153] # 31 104 1 74 74 151 98 1e-34 MIEGVVDGYKKNLKLIGVGYRAQAQGNKLVLNVGYSHPVEFETPEGITVKTPSAVDIEIE GISKQVVGQFAAEVRAVRPPEPYKGKGIRYVDEYVRRKEGKTGK >gi|313656766|gb|GL545251.1| GENE 1046 991333 - 991551 193 72 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_01500 NR:ns ## KEGG: LAC30SC_01500 # Name: rplF # Def: 50S ribosomal protein L6 # Organism: L.acidophilus_30SC # Pathway: Ribosome [PATH:lai03010] # 1 52 1 52 176 67 67.0 2e-10 MSRIGFKVINVPDSVTVTKEGNVITVKGPKGELSREFSPKSPLNKKTEKLLFLVQVKMIK LFTVHQEQTLHL >gi|313656766|gb|GL545251.1| GENE 1047 991576 - 991974 667 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525644|ref|ZP_03955693.1| ribosomal protein S8 [Lactobacillus jensenii JV-V16] # 1 132 1 132 132 261 100 7e-68 MVMTDPIADYLTRIRNANMAKHDSVEIPASTIKKSLSEILKQEGFIRDYEVTDDNKQGMI KIFLKYGPNGERVISGLKRISKPGLRNYVGAENLPKVLNGLGIAIVSTSAGVITDKEARE KNVGGEVLAYVW >gi|313656766|gb|GL545251.1| GENE 1048 991998 - 992183 335 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525645|ref|ZP_03955694.1| 30S ribosomal protein S14 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 133 100 2e-29 MAKTSLKVRNHRPAKFSSRAYTRCERCGRPHSVYRKFGLCRICLKDLAHKGQIPGLKKAS W >gi|313656766|gb|GL545251.1| GENE 1049 992198 - 992740 897 180 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525646|ref|ZP_03955695.1| ribosomal protein L5 [Lactobacillus jensenii JV-V16] # 1 180 1 180 180 350 100 2e-94 MANHLAVQYKEEVASALAEKFGYKSTMQIPKIEKIVLNMGVGDAVSNAKNLDEAVEELTL ISGQKPLITKAKKSIANFRLREGMSIGAKVTLRGDRMYDFLDKLINVSLPRVRDFRGVST RSFDGRGNYTLGIKEQLIFPEIDFDKVNRTRGLDVVIVTTAQTDEEARELLQQFGFPFAK >gi|313656766|gb|GL545251.1| GENE 1050 992755 - 993069 525 104 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855079|ref|ZP_04645407.1| ribosomal protein L24 [Lactobacillus jensenii 269-3] # 1 104 1 104 104 206 100 2e-51 MFVKTGDKVKVIAGKEKGKEGTVIRVDRKNDRVVVKGLNMIKKHEKPSQTNQNGGVVEKE GSIHVSNVMLIDPESGKPTRIGHEIVDGKKVRIAKVSGKAIDKK >gi|313656766|gb|GL545251.1| GENE 1051 993091 - 993459 600 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525648|ref|ZP_03955697.1| ribosomal protein L14 [Lactobacillus jensenii JV-V16] # 1 122 1 122 122 235 99 4e-60 MIQNESRLKVADNSGARELLVIRVMGGSKRKTGNIGDIVVCAVKQATPGGVVKKGDVVKA VIVRTKSGARREDGSYIKFDENAAVVINADKSPRGTRIFGPVARELREHDFMKIVSLAPE VL >gi|313656766|gb|GL545251.1| GENE 1052 993492 - 993758 450 88 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525649|ref|ZP_03955698.1| 30S ribosomal protein S17 [Lactobacillus jensenii JV-V16] # 1 88 1 88 88 177 98 1e-42 MSETIERNRRHVYQGRVVSDKMDKTITVVVDTYKNHPVYKKRIKYSKKYYAHDVNNDAKV GDTVRIMETRPLSRQKRYRLVKIVKRRV >gi|313656766|gb|GL545251.1| GENE 1053 993781 - 993978 316 65 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525650|ref|ZP_03955699.1| ribosomal protein L29 [Lactobacillus jensenii JV-V16] # 1 65 1 65 65 126 100 4e-27 MKAKDIRSLTTDQMLEKEKQYKEELFNLRFQQATGQLENTARLRQVRKNIARIKTVLSEE ALKQN >gi|313656766|gb|GL545251.1| GENE 1054 993968 - 994408 754 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525651|ref|ZP_03955700.1| 50S ribosomal protein L16 [Lactobacillus jensenii JV-V16] # 1 146 1 146 146 295 100 6e-78 MPLVPKRVKHRREFRGKMRGAAKGGKTIAFGEYGLMALESHWITNRQIEAARVAMTRYMK RGGKVWIRIFPHKSYTAKGVGVRMGSGKGAPAGWVAVVKREKIMFEIGGVSEEVAREALR LASTKLPIKCKFVAKSTEVGGESNEG >gi|313656766|gb|GL545251.1| GENE 1055 994408 - 995082 1146 224 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525652|ref|ZP_03955701.1| ribosomal protein S3 [Lactobacillus jensenii JV-V16] # 1 224 1 224 224 446 100 1e-123 MGQKINPLGFRLGVNRDWEAKWFADKDYKETLNEDLRIRDFVAKKLKDASVSTVEIERAA NRINISIHTAKPGMVIGKGGSEVEALRKQLNALTEKQVHINIVEIKKPDLDAELVGDSVA RQLEARIAFRRATRQATQRAMRAGAKGIKVQTAGRLNGADMARREWHTEGSVPLHTLRAD IDYAWVQALTTYGQIGVKVWINRGEILPGRKNRPASKRSKGGNK >gi|313656766|gb|GL545251.1| GENE 1056 995096 - 995290 319 64 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525653|ref|ZP_03955702.1| 50S ribosomal protein L22 [Lactobacillus jensenii JV-V16] # 1 64 54 117 117 127 100 2e-51 KVLRSAIANAEHNYDLESANLYVSEAYVNEGATLKRFRPRAKGMASPINKRTSHVVVVVS EMND >gi|313656766|gb|GL545251.1| GENE 1057 995125 - 995448 264 107 aa, chain - ## HITS:1 COG:lin2776 KEGG:ns NR:ns ## COG: lin2776 COG0091 # Protein_GI_number: 16801837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosomal protein L22 # Organism: Listeria innocua # 1 54 1 54 118 75 74.0 2e-14 MAEQITSARAEARTVRIAPRKARLVIDLIRGKSVAEALAILQFTPRAASPIVEKFYVQQS LTQNTITILKVQTSTFLKPMSMKVQPLRDSALVLKVWLLQSTREPVT >gi|313656766|gb|GL545251.1| GENE 1058 995472 - 995747 473 91 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525654|ref|ZP_03955703.1| 30S ribosomal protein S19 [Lactobacillus jensenii JV-V16] # 1 91 1 91 91 186 100 2e-45 MSRSIKKGPFADEHLLKKVAAQENAEKKQVIKTWSRRSTIFPSFVGLTIAVYDGRKHVPV YVTEDMVGHKLGEFVPTRTFRGHKADDKATK >gi|313656766|gb|GL545251.1| GENE 1059 995769 - 996605 1453 278 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525655|ref|ZP_03955704.1| 50S ribosomal protein L2 [Lactobacillus jensenii JV-V16] # 1 278 1 278 278 564 99 1e-159 MAIRKYKPTTNGRRNMTSSDFAEITKKKPERTLLESQSHTAGRNSYGHITVRHRGGGHKQ KYRIIDFKRNKDDVKAVVKAIEYDPNRTANIALLHYTDGIKAYILAPKGLKVGDIVESGV EADIKPGNALPLANIPTGTSIHNIELKPGKGGQLVRSAGTEGQVLGTDGRYTLVRLQSGE VRRILSTCRATIGVVGNEQHSLIQLGKAGRKRWLGKRPQSRGSVMNPNDHPHGGGEGKAP VGRPQPMTPWGKKSRGIKTRNTKKASEKMIIRHRKGNK >gi|313656766|gb|GL545251.1| GENE 1060 996621 - 996917 491 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855070|ref|ZP_04645398.1| ribosomal protein L23 [Lactobacillus jensenii 269-3] # 1 98 1 98 98 193 100 2e-47 MNAHDIILRPVITEKSTNLMDNKKYTFDVLLTATKTQVRNAVEEIFDVKVKSVNIMNVRG KDKRVGRYTGKTARRRKAIVTLTNDSNDIKIFADEDNK >gi|313656766|gb|GL545251.1| GENE 1061 996917 - 997042 179 41 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855069|ref|ZP_04645397.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii 269-3] # 1 41 165 205 205 73 90 3e-11 SKKLGNVKVVPVNGLNVVDAVNYDKLILTQDAVKRIEEVLA >gi|313656766|gb|GL545251.1| GENE 1062 996997 - 997533 863 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855069|ref|ZP_04645397.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii 269-3] # 1 173 1 173 205 337 97 1e-90 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQD NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSDNENVQLSARNLETLRLFQLMA >gi|313656766|gb|GL545251.1| GENE 1063 997548 - 998177 1067 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525658|ref|ZP_03955707.1| 50S ribosomal protein L3 [Lactobacillus jensenii JV-V16] # 1 209 1 209 209 415 100 1e-114 MTKGILGRKVGMTQIFTDKGVLVPVTVIEATPNVVMQVKTVESDGYEAVQLGYQDKREVL SNKPEKGHADKAKTSPKRFIREIRGVELKDYEVGSEVTVDTFKEGDVVDVTGTTRGHGYQ GNIKRHGQSRGPETHGSRYHRIPGSMGSIINRVPKGKKLPGHMGVKTVTIQNLVIEKVVA DKNVLLVKGNVPGAKDSLIVVKSATKADK >gi|313656766|gb|GL545251.1| GENE 1064 998205 - 998735 889 176 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855067|ref|ZP_04645395.1| 30S ribosomal protein S10 [Lactobacillus jensenii 269-3] # 1 176 1 176 176 347 100 1e-93 MKKRQKSFAKALINKLIAGILVFVHFKGKYALVHIFFVALTQKVAAHQAALPQWRAGNFC RASHLLKKTQGGNLMASQQIRIRLKSYEHGILDESAAKIVATAKRTGAEISGPVPLPTER TLFTVLRSPHKNKDSREQFEMRTHKRLIDILNPTPKTVDSLMKLDLPSGVDIEIKL >gi|313656766|gb|GL545251.1| GENE 1065 998792 - 1000318 1422 508 aa, chain - ## HITS:1 COG:FN2106 KEGG:ns NR:ns ## COG: FN2106 COG1288 # Protein_GI_number: 19705396 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 3 501 17 512 518 420 45.0 1e-117 MVSKRRKHRFPTAYTVIIIVLLLVEILTNFIPSGNYATLAYNSDSNNFVITEPNGSTKKE SATQKTLDNYKVNIEISKFKDGTIYKPVAIPNSYERIKSKKPNLLQAVINFFTAQVKGIG DSIDIITFVLILGGCIGIVNTNGAINSGIAALSKKIKGKQALLIIVVMALISIGGTTYGL AEETMAMYPILIPVFLMAGYDTMTVIGTIFLADSIGTMISTINPFSTIIASNAAGVNFSH ALPLRIIMWAICTIIGMIYVVVYAEKVRKHPEASYVYDQYESDRKKFLTDSSFKETKFTW QQKLTLSIFAIAFIIMIWGVQSQGWYFTEISVIFLAAGYLMALFSGMDEHKVVGAFVNGA GDLLGVALTIGIARGVSIIMENSHTSDTIMNFFSKQISGLPPLIFIWLLFLVYIVLGFFI QSSSGLAVLSMPIMAPLANVVGIDRSSVIDAYNLGQGFISLIAPTGLILMGLMMVGIDFN KWFKWCWKLLVIEFILCLVFLGLGLLVY >gi|313656766|gb|GL545251.1| GENE 1066 1000463 - 1002553 2948 696 aa, chain - ## HITS:1 COG:BS_fus KEGG:ns NR:ns ## COG: BS_fus COG0480 # Protein_GI_number: 16077180 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Bacillus subtilis # 4 693 3 691 692 990 71.0 0 MAKREFPLEKTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETHEGDSQMDWMEEEKER GITITSAATTAQWKDYRVNIIDTPGHVDFTIEVERSLRVLDGAVTVLDAQSGVEPQTENV WRQAETYGVPRIVFVNKMDKIGANFDFSVKTLHERLNANAHAVQMPIGAEDQFEGVIDLI NMVADVYDEDKLGSKWDTVPVPDEYKAEAEKRRGELIEAVADVDDDIMEKYLGGEEITNE ELKAAIRKATLDLKFFPVFAGSAFKNKGVQMMLDGVVDYLPSPLDVKPYVAHDPKTDEEV ELLADDNKPFAALAFKIATDPFVGRLTFIRVYTGSLQSGSYVLNASKNSRERVGRLLQMH ANSRTEISEVFSGDIAGAIGLKNTTTGDSLTDPDHPLILESLEVPDPVIQVSIEPKSKAD RDKLDVALQKLTEEDPTFKAETNAETGQTLIAGMGELHLDIMVERMKREFHVEATIGEPQ VAYRETFTKPTKAQGKFVRQSGGKGQYGDVWIEFTPTKEGEGYEFEDAIVGGVVPREFIP SVDAGLQEAMKNGVLAGYPLIDVKAKLYDGSYHEVDSSEAAFKVAASLALKNAAPKAGAV ILEPIMKVQVITPEEYLGDVMGSITARRGNMDGMEDRSGAKVLNAMVPLSEMFGYATTLR SSTQGRGTFTMVFDHYSPTPKSIQEEIIKKRGGNAE >gi|313656766|gb|GL545251.1| GENE 1067 1002590 - 1003060 794 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855064|ref|ZP_04645392.1| ribosomal protein S7 [Lactobacillus jensenii 269-3] # 1 156 1 156 156 310 100 1e-82 MPRKGHVAKRTVLADPIYNSKLVTKLINHLMIDGKKAKASSILYDAFSIIKDKTGKEPLE VFEEAMNNVMPVLEVRARRIGGSNYQIPVEVRPERRTTLGLRWLVSYARLRNEHTMDERL ANEIIDASNNTGSAVKKREDVHRMAEANRAFAHYRF >gi|313656766|gb|GL545251.1| GENE 1068 1003075 - 1003482 699 135 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525665|ref|ZP_03955714.1| 30S ribosomal protein S12 [Lactobacillus jensenii JV-V16] # 1 135 1 135 135 273 100 1e-71 MPTINQLVRKGRHSKTTKSKSPALNYGYNSMKKEQVFNPAPQMRGVATRVGTMTPKKPNS ALRKYARVRLSNLTEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGV DGRKQGRSKYGAKKG >gi|313656766|gb|GL545251.1| GENE 1069 1003665 - 1004111 88 148 aa, chain + ## HITS:1 COG:aq_1601 KEGG:ns NR:ns ## COG: aq_1601 COG1989 # Protein_GI_number: 15606720 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Aquifex aeolicus # 8 111 11 121 254 58 33.0 3e-09 MVLHIINFYLGACIASFISVIVQKDGLKWRRSYCLSCKQTLSWYELLPIFSFLLQKGSCR HCKNKIPSFLIFIELIGGIAFFKTDWYSKSGLIEFFLCLLLLMMSIFDYYYQEISFSIFI FSFLIVIIKVLLFEKVAITAISFFQSSS >gi|313656766|gb|GL545251.1| GENE 1070 1004108 - 1004347 165 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855062|ref|ZP_04645390.1| ## NR: gi|238855062|ref|ZP_04645390.1| prepilin peptidase [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] prepilin peptidase [Lactobacillus jensenii 208-1] prepilin peptidase [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] prepilin peptidase [Lactobacillus jensenii 208-1] # 1 79 149 227 227 101 100.0 2e-20 MSSTLGILVLLKKLGLADLFFYLIISFFYSEYFANLVFLFASLAVLTLYPKLKAQKQTHL SLPFIPFLFFSLSFLKLLI >gi|313656766|gb|GL545251.1| GENE 1071 1004422 - 1008090 4658 1222 aa, chain - ## HITS:1 COG:SPy0099 KEGG:ns NR:ns ## COG: SPy0099 COG0086 # Protein_GI_number: 15674322 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 1 1189 1 1190 1213 1709 69.0 0 MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPSKDWAC ACGKYKGIRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDV SPRALEEVIYFAAYIVIDAGDTDLEPKSLLTEAEYREKKAKFGNRFVAKMGAEAIKELLQ NVDLDKEVKSLKAELQTATGQKRTRAIRRLDILNAFKDSGNKPEWMVMDTVPVIPPDLRP MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLHAPNIIVQNEKRMLQEAVDALIDNGR RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP MALELFKPFVMHELVKRGVATNIRNAKRKIDREDDDIWDILEYVIKERPVLLNRAPTLHR LGIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL APKDGKPIVTPGQDIVLGNYWLTQAERGREGEGMIFNSPAEATMAYANGDIHFHTRIGLA ADSMPEKTWPKGYEHGVFVTTYGKMIFNQIFPKDFFYVNDPTQENLTHPLDVKYFLQPGE DIHEKLDNMDLGTPFKKGFLSDAIAAVYKEYRVQRTSDFLDDMKELGYTACTTSGLTIGM ADIPMVSDKDDIVAKAHKKVDVVSKQFRRGLITEQERHDRVISIWNACKDEVQSEVAGIF DPRNPISVMADSGARGNISNFTQLAGMRGLMAAPNGGMMEIPVTSNFREGLTVLEMFMST HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREADCGTDRGITVHAIKEGDEMIEPLF DRLVGRYTARSVFDPETHEVIAPKGIMMDEELAQEIVDRGVKEVTIRSVFTCNTQHGVCQ KCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTMRNFHNGGVAGAEDITQGLPRVQEL FEARNPKGRATISEVTGVVASIEENPAEHTREITVEGKTDTRTYSVPYTASVAVAEGDEV VRGDKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIADKHVEVMARQMLQKV RVLDPGETDILPGELMDIGEFKDRNKEVIISGGIPATAQSVILGITKAALETNSFLSAAS FQETTRVLTDASIRSKNDPLLGLKENVIIGKIIPAGTGMPVYRSMEPQADVPKPQAVYSI ADIERQLAEENKIDLNSLNKNK >gi|313656766|gb|GL545251.1| GENE 1072 1008102 - 1009499 1608 465 aa, chain - ## HITS:1 COG:lin0285 KEGG:ns NR:ns ## COG: lin0285 COG0085 # Protein_GI_number: 16799362 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Listeria innocua # 1 419 749 1167 1184 685 79.0 0 MAEGELALGQNPLIAFMTWNMYNYEDAIMISERMVKDDVYTSIHIEDYESEARDTKLGPE EITREIPNVGEDALKDLDEQGIVRIGAEVKDGDILVGKVTPKGVTELSAEERLLHAIFGE KAREVRDTSLRVPHGGGGIVQNVEVFTREGGDELSPGVNTMVRVYICQKRKIQVGDKMAG RHGNKGTIAVVVPEEDMPFLPDGRPVDICLNPMGVPSRMNIGQVLELHLGMAARQLGIHV ATPVFDGADEDEVYNTLREAGMSKDGKTVIYDGRTGEPFHNRVSVGIMNYLKLAHMVDDK IHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRV KAYEAIVKGERIPKPGVPESFRVLVKELQSLGLDIRVLDMDHKEIELRDMDEDSSEHLNI DTLSRLAEEQEKKKLAEEATKSEETTSEQSATSSVDQASDDTVSK >gi|313656766|gb|GL545251.1| GENE 1073 1009517 - 1011739 1486 740 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 12 734 11 811 1392 577 43 0.0 MFSLDGHLVNYGQHRTRRSFSHIKEVVKLPNLTDVQTESYKWFLNEGISEVFEDIMPIND FSGKLSLDFVGYKLQDAKSTIDEARNHDANYAAPLRVTLKLTNHETGEIKTQDVFFGDLP LMTRSGSFVINGAERVIVSQLVRSPGVYYNCDVDKNARQIFGATVIPNRGAWLEYETDAK NISYVRIDRTRKLPISVLIRALGFGSDSEIQDIYGTNDTLQFTLEKDVHNNPADSRVAEA LKEIYERLRPGEPKTTDSSRSLLFARFFDSRRYDLAPVGRYKINKKLSLKSRLLNQTLAE TLADPDTGEIIAKKGTIVTHAVMETLEKYLDRDDFKMVTYTPSDEGVMQDPITVQEIKVF SKVNPEREVKLISNGHINADVKCITPADILASINYFFALQDEIGSTDDIDHLGNRRIRRV GELLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPIVASVKEFFGSSQLSQFMD QNNPLGELTHKRRMSALGPGGLSRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSMA TYAIINKYGFIETPYRRVSWETHKVTDKIDYLTADVEDNYIIAGANTPLNEDGSFKENLI LARHKDDNVEVTPDKIDYMDVIPKQVVSVTSACIPFLENDDSNRALMGANHQRQAVPLIN PHAALVGTGMEYRAAHDSGDALVAEAAGVVEYVDADQIRIRREDGTLDKYELEKYRRSNA NKNYNQTPNVKKGERLLKAK >gi|313656766|gb|GL545251.1| GENE 1074 1011957 - 1013015 983 352 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 9 348 477 815 815 383 56 0.0 MNAYRKAVVNEEDIARVVSEWTGVPATQMKKDDTRKLINLEATLHKRVIGQNKAIQAVAK AIKRSRSGIKDEGRPIGSFLFLGPTGVGKTELAKAVASAVFGSENNLVRIDMSEYMDTIA SSKLIGSAPGYVGYEEGGQLSEQVRRHPYSVVLLDEVEKAHPDVFNLLLQVLDDGFLTDS KGRKVDFRNTVIIMTSNLGSRSLVSDKTVGFTTSEVSQEKERISKVQAATKDFFRPEFLN RIDATIVFDQLQKNDLRKIVTLLTQKLVDRLAKKQIVVKFSPAALDVIAKAGFDPENGAR PLRRAIQNLVEDKLSDMLISSELVSGQTLKIGAAKGQLKFTVSETKKAALSK >gi|313656766|gb|GL545251.1| GENE 1075 1013286 - 1014437 922 383 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 373 6 366 815 359 52 0.0 MEYSYSSSANQVLAIAKEQAQNFQHRMIGTEHVLLALVIESSGDAGKILRQWNITSGDIR REVERYTGYGSAPKSSYMEMSPRLNMTLNYARRAAQDAGAKEVKTLHILLGLVSTEQVLA AMILKNLNVDLDHLRQDILDDLSEGSGDLSQESNEFFDGLGLNQNKGKGNSKTPTLDSVS INLNKQAREGEIDPVIGRDLETKRVIQILSRRTKNNPVLVGEPGVGKTAVAQAIATCIVK KQVPEDLLDKRVMALDIGSLVAGTKYRGEFEDRMKKILKEIRTDGKVILFVDEMHTLIGA GGAEGAIDASNILKPSLARGDIQMIGATTFDEYQKYIEKDQALARRFQQVRITEPSKEDT LHILEGLKPNMKAFTMFKLVKLL >gi|313656766|gb|GL545251.1| GENE 1076 1014535 - 1014744 281 69 aa, chain - ## HITS:1 COG:no KEGG:LBA1353 NR:ns ## KEGG: LBA1353 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 66 268 333 342 75 48.0 9e-13 MGRRTYESVAKTYEATEIMQARLGRYSNSDLKTQQKIARRNLANSKQTYENYLAQYKMIE EELNKRKNQ >gi|313656766|gb|GL545251.1| GENE 1077 1014675 - 1015379 641 234 aa, chain - ## HITS:1 COG:BS_yyaS KEGG:ns NR:ns ## COG: BS_yyaS COG2364 # Protein_GI_number: 16081125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 4 192 8 190 201 67 27.0 2e-11 MSIVGVTILSIGATFLRGGNVGLDPFTAINTGISNKLGLGLGIFQLSVNFVIFLLILWLD RKKIGIGTFVNMIMVGFEIQFFTQIYNQLFPEKITFLVIVADTVIGLLLFTLGSSLYMGP KLGVAPYDAIAPIFSERFKSSYKITRIIQDVLFMAGALAFGGPVGFATIIVAFFTGPLIT WWNEHISDPLVEFINHLTRPDTRNKVTDFYQRWDAEPMNRSLRLMKQLKLCKQD >gi|313656766|gb|GL545251.1| GENE 1078 1015970 - 1016458 297 162 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855057|ref|ZP_04645385.1| ## NR: gi|238855057|ref|ZP_04645385.1| hypothetical protein LACJE0001_0965 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved domain protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0965 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved domain protein [Lactobacillus jensenii 208-1] # 1 162 1 162 162 223 100.0 3e-57 MSRQRKFWLFSLVICLILFWARQVLPELTNSQMTLVNFAFSSRGMRLMLLSCLLFTYDIC PVLMATTEADEFNTFLWTRKIGVSKAYMIFAKRFANYFLPFIVAHLMLLNSLQLLLQLLT LPIWLLLWVILTALEFVKIASPIKKASIGLVFLVARMGILLI >gi|313656766|gb|GL545251.1| GENE 1079 1016451 - 1017047 194 198 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 193 1 215 245 79 28 5e-13 MLRIENVNKNFGKKVILKDINLTVKPGERVHIVGKNGCGKSTLFKIITGILKAQGQVKLD EEDYLGAMIENPGFLEYETGLENLKFLANLNHHYDEAKVRNLMKEFSLDPDESQAVSKYS IGMRQKLGIIQAIMENQNIVLFDEPTRGIDKEGVTTFLKMLDRLKEQKVSVIIATHEDIA GLTYDRVLKLENGALENV >gi|313656766|gb|GL545251.1| GENE 1080 1017060 - 1017638 464 192 aa, chain - ## HITS:1 COG:no KEGG:LEGAS_0019 NR:ns ## KEGG: LEGAS_0019 # Name: not_defined # Def: hypothetical protein # Organism: L.gasicomitatum # Pathway: not_defined # 16 191 17 191 193 80 30.0 3e-14 MPEKTDKILKYSLLLMMALGFLASLFLAPDFTSKTDVIFPTCYSHFLSLYVQTGLYVLTY YEVITIRHLSNEIAVRSQTKRIIVFLMRLIFCQWFLFWLSYLATFYLLGHRIFFKMGNPV FGMNLLLGHLILVLLLAWCLILAYKVPYPYLVIIIVVILTLIYHYYFEVKILLPKYNPIF DPIYRALHHIYL >gi|313656766|gb|GL545251.1| GENE 1081 1017741 - 1018562 619 273 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1855 NR:ns ## KEGG: MPTP_1855 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 9 261 23 277 285 95 29.0 3e-18 MFSKRTCKIMLLALLVYLLLITFTTLSIIKSEMKPTVTAEDFIYMFTIVQPFGFFDSLST YMSLLIFPVIGSFTSIFVKNNNELSNIIQRIGYNNFLKKAALQAFLMGVTFSVISEIYRI ILINWNYAPITFTEKSFYLFQSKNSFSNNSFIQLLLFMATAAVGWGIFSVFIFACGLYVK KNAIFLISGEFIGLILLLLPTLYAMINPFLLAVANIVEIPTLVAPGLINMGSQGAPGGIM ITWVACALLYAFSAWILMTLWKKKAIANELKGK >gi|313656766|gb|GL545251.1| GENE 1082 1018839 - 1019333 342 164 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855053|ref|ZP_04645381.1| ## NR: gi|238855053|ref|ZP_04645381.1| hypothetical protein LACJE0001_0961 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_1356 [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0961 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_1356 [Lactobacillus jensenii 208-1] # 1 164 1 164 164 240 100.0 3e-62 MSKSVKVWSYTLITILILGLARVYFKELVGSQLWLVNFAITTKTLKLFSLGAALYFFDVV MALSAVSEFEEIATFLWVRELSLIRLWRAFASRYIKYFGSLLLVHLPLISWQNMSFSLLS LLGEAIVWGVAVSIGFSKSNSISQKISIPLLFGVLRILGMLIVS >gi|313656766|gb|GL545251.1| GENE 1083 1019326 - 1019925 723 199 aa, chain - ## HITS:1 COG:BS_ydbJ KEGG:ns NR:ns ## COG: BS_ydbJ COG1131 # Protein_GI_number: 16077516 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus subtilis # 1 198 5 214 308 123 35.0 2e-28 MLKIDNISKQFGKKQVLKDVSLELNPGERIHIIGKNGSGKSTIFKIITNILKADAGQVEL AENDYVGALIENPGFLEYESGLENLKFLGNLNHNYDEQVAMKLMEKFDLDPNDLQAVSKY SIGMRQKLGIIQAVMENQNIVLLDEPTRGIDKEGVATFVKLLDELKQEKSAVTIASHDEI PGLKYDRELLLKNGELASV >gi|313656766|gb|GL545251.1| GENE 1084 1019938 - 1020192 186 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855051|ref|ZP_04645379.1| ## NR: gi|238855051|ref|ZP_04645379.1| hypothetical protein LACJE0001_0959 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative plasma membrane ion transporter [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_0959 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative plasma membrane ion transporter [Lactobacillus jensenii 208-1] # 1 84 116 199 199 105 100.0 2e-21 MGDFKFGLWILLAHMLLMLFLMLSLLLAYRLPFPYFIIILVIAITWSYHLCFEFTLILPK YSKIFDPLYRATHYIYLGICHIFL >gi|313656766|gb|GL545251.1| GENE 1085 1020279 - 1020536 127 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855051|ref|ZP_04645379.1| ## NR: gi|238855051|ref|ZP_04645379.1| hypothetical protein LACJE0001_0959 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative plasma membrane ion transporter [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_0959 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative plasma membrane ion transporter [Lactobacillus jensenii 208-1] # 1 82 1 82 199 132 97.0 9e-30 MPTKTNKYIRYSLIGVLALSFFAYWLLIAGMKPKYDIIFAVSFQHGLSIYLQNLLYILVF FQVLIARKVSNAIAVRKQTKRLFPS >gi|313656766|gb|GL545251.1| GENE 1086 1020536 - 1021351 374 271 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1855 NR:ns ## KEGG: MPTP_1855 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 5 269 19 283 285 101 31.0 3e-20 MLSKRTNKIIVLALLAYLILITYTILSAIKAEMRPGITIDAESFIYMFELVQPFGVYDGF LLTGTLLILPIIGSFVPIFVKNNNELNNVVQRIGYGNFLKKSVCQTFIVGLGFSFISQIY EIILINWNYAPIAFSNDSFYLAQRFNTFSNNSFIQLLTYIVTSSIGWGIFSVFIFACGLY IKKNPLFIVSGAVLGLILLLLPTLYGMMNYFLYAVANVTEISTLIAPGMIDFASQKAPGG IMIIWIISAILYALIAWILMMTWQKKQLRGK >gi|313656766|gb|GL545251.1| GENE 1087 1021412 - 1021828 581 138 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1854 NR:ns ## KEGG: MPTP_1854 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 12 138 13 138 138 122 57.0 4e-27 MKLLKKNNVTAMIVAMGLVTGLTGTALASASGYWTITQETVGAYGAWSSFGSPNLKQSSD NVASFNGDAMPAWWGYNVRLINGNGASRSNWTRLKKDQTTYSYNNSGLKGYYYYADIRSQ TYEPNVTTVKAHFSADRK >gi|313656766|gb|GL545251.1| GENE 1088 1021954 - 1022775 375 273 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00472 NR:ns ## KEGG: LCRIS_00472 # Name: not_defined # Def: ranscriptional activator rgg/gadr/mutr-family # Organism: L.crispatus # Pathway: not_defined # 6 256 3 259 284 107 30.0 4e-22 MNNSIGKTFKKLRVSQNITLKAAVHNIEQLSPSRLSHWENDESNIPLNKLDQLLENIHVL PNEFAHLVGQRYVNHLSLQVQDAFIANNIEELHMLALNQLKKYNHIQDNTELFLCALTCN FYYQKTKIDIFPMSLKEKITKVLTSTSLWNYYHITTFGNVTHLLPDELLYKIAVKLINSF PHIKDCGMENHIFAFIALLNANVALIFKNPNLAKNYCIKSVNLKSINLITIQAYIFPLLK TYLITNKLKIQNSLSWHKILFTFVNQSIKKTRP >gi|313656766|gb|GL545251.1| GENE 1089 1022900 - 1023601 269 233 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1055 NR:ns ## KEGG: LGAS_1055 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 7 215 6 214 269 189 46.0 6e-47 MNTLTTLKQKLNHPKASYKTDELNFLMNNIGNPNSEIRDDLVCSIFGKAFLNNEFAFEQA RFCYETAIKQNLLFYRFGETGSATLTRSFTCLLYYLIIHTSNDSHSSYYRLLTSQEEVQL YNLLIKYLKTEHDFTASTPEYGWIDALPHCCDALSEAIKQKNFSSQLVEDLFQATDELLK NIDRNLDYDELSRLATIFINGFKNKKITKHQLSLWNTKLTNLKDENSHLTKND >gi|313656766|gb|GL545251.1| GENE 1090 1023628 - 1025151 2090 507 aa, chain - ## HITS:1 COG:SP0713 KEGG:ns NR:ns ## COG: SP0713 COG1190 # Protein_GI_number: 15900610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Streptococcus pneumoniae TIGR4 # 5 492 3 491 491 664 68.0 0 MAKNELNDQLIVRREKLEELRESGLEPFGRKYERTDLARTLDEKYKGEDKDELNADMPQT KIAGRMMAKRGKGKVGFADIYDRTGKIQIYVRKDIVGEENYQIFKKSDLGDFLGIEGEVM KTDTGELTVRAHHVTFLSKALRPLPDKYHGLQNVEQIYRQRYLDLMTNHESYMRFVHRTK IIQAIRDYLNNRDFLEVETPVLHNIPGGAEARPFITHHNALDIDLYLRIALELPLKRLIV GGMERVYEIGRVFRNEGVDTRHNPEFTELETYCAYWDFHDVMDEAEGIIKAAAKVVTDDG KVNYQGTEIDLGKPFRRVHMVDLIKEQTGVDFWKPMTLDEAKKVAEEHGIHVEPFWKVGH IINAFFEEFGEKSIVNPTFVYGHPVEISPLAKKNADDPRFTDRFEIFIMGMEYGNAFSEL NDPIDQRERFEAQMAERDAGNDEADVIDEDFVRALEYGMPPTGGLGIGIDRLVMLLTDAP AIRDVLLFPTMRPERIHDEEKDIDLDK >gi|313656766|gb|GL545251.1| GENE 1091 1025173 - 1026201 473 342 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145637283|ref|ZP_01792944.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae PittHH] # 8 323 2 316 326 186 33 2e-45 MTNTNSWKIRDITIPNRVVVAPMAGVSNSAFRVVCKEFGAGLVVCEMISDHGIIYRNKKT LDMLQVAPNEHPMSIQIFGGTEDTLLEAAQYIDQNTAADIIDINMGCPVPKVTKTDAGSK WLLDANKIYQMVHKVVQNVEKPVSVKMRLGWDRKHIFAVENALAAQEAGASMLAMHGRTR KQMYQGEADWETLHEVANALTIPFVGNGDITSPELAKKMIDEVGATAVMIGRAALGNPWE IKDMVHYLETGEKLRPQTVREKIETAKHQLNGLVELKGEKVAVPEFRQQAAYYLKGIPRS ARTRAKINEVWTRQEVYDLLDGFVEEYEKREAAKKARQAMKD >gi|313656766|gb|GL545251.1| GENE 1092 1026289 - 1027170 906 293 aa, chain - ## HITS:1 COG:lin0254 KEGG:ns NR:ns ## COG: lin0254 COG1281 # Protein_GI_number: 16799331 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Listeria innocua # 1 279 1 282 294 266 48.0 3e-71 MNDYLIKAIDKTKNLRLLAVTSKDLVSEAQKRHDTWSASSAVLGRTLTGGLLLAAAGLVD KQELTVRLMGNGPVGACVVTAKSDFTVKGYISNPHIALPPRNDGHIDVKKAVGEGWLQVT KDQGLNEPYTGEVPIVSGEIAEDFTYYLAKSEQIPSAVGLSVFVQANNTIGAAGGFMLQA LPGASDELLSTVEQRIKALPNISSLFLEGITPEQLAKKILGEDCKILETDDVAYACDCSK EKFSHLLATLKKADLQEMINKDHGAELTCQFCKEKYHFSEKELKAILAEQLEK >gi|313656766|gb|GL545251.1| GENE 1093 1027211 - 1029337 1206 708 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 13 668 14 636 636 469 40 1e-130 MKNKRNRLFTNGLFYIVIFLLMLWGINWMIGGGQSASSSENVSYSQFVKNLKNGKIKDFS IQPANGVYSISGSYKKAKVQKKKTTSYDFLTGASNSAKITKFSTTMLQNDPTVKTVENLA QKHGAKITTQGESQSGSWLSAIITIVPTIFFMVMLWMMMNQSAGGSRGGGGVLNFGKSRV KPEDPTKNRVRFSDVAGEEEEKQELVEVVEFLKDPSRYLKLGARIPSGVLLEGPPGTGKT LLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTSPSIIFIDEIDAIGRR RGNGIGGGNDEREQTLNQLLVEMDGFQGDEGVIVMAATNRSDVLDPALMRPGRFDRKVLV GRPDVKGREAILRVHAKNKPLASDVDLKEVARQTPGFVGADLENVLNEAALVAARRNKTE ITAADIDEAEDRVIAGPAKKDRMISDEERKRVAFHEAGHSICGLVLSDSRTVRKVTIVPR GRAGGYNIMLPKDDQFILTKKQLMEQIVGLMGGRAGEEVVIGDRSTGASNDFEQATAIAH SMVVHYGMTDELGMVQLEKEGQAEYGVKPYSEATAAKIDEAVKKILDEAHKQAIQIVEDN REKHRLIAEALLKYETLNEKQIMALYKTGEMPEADQEEFPSESKASTYEEAKAAMEKKEH QKDSNDSSDNKEVDDKSENKTTEENSSVDANEEKKPEKPSDNENEDED >gi|313656766|gb|GL545251.1| GENE 1094 1029421 - 1029888 100 155 aa, chain - ## HITS:1 COG:no KEGG:lhv_0295 NR:ns ## KEGG: lhv_0295 # Name: not_defined # Def: putative cell cycle protein # Organism: L.helveticus # Pathway: not_defined # 3 152 281 429 431 119 43.0 4e-26 MGRKIWKYYNERVHLDNWQSGIYRVLEYQDYFYLFKGQPKFVDKSSIKLDQPFTFHGRKY LITTQLNPQAKLVGTFWSKKAGFEVGSAISGSKLQLKNGHHAKSKKFFAQAAIPNILRPA ILCLYQNKAIVFIENVYKNQKCANDFIKYYVFLVN >gi|313656766|gb|GL545251.1| GENE 1095 1029843 - 1030250 286 135 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00281 NR:ns ## KEGG: LCRIS_00281 # Name: mesJ # Def: cell cycle protein # Organism: L.crispatus # Pathway: not_defined # 1 123 143 266 417 107 43.0 1e-22 MSSLQAVGQMAGVKLARPLLYYSKAELTKYLLDKHLAFITDETNLTNENLRNRIRHQVVP LLKKENPAILKNGRVFGQKMLAYQGVAQKAFSDLELEPVAGSLRIKKKLLANYTDAEKNL FWEGKFGNIIMNEFI >gi|313656766|gb|GL545251.1| GENE 1096 1030358 - 1030657 81 99 aa, chain - ## HITS:1 COG:BS_yacA KEGG:ns NR:ns ## COG: BS_yacA COG0037 # Protein_GI_number: 16077135 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Bacillus subtilis # 1 99 1 109 472 58 34.0 2e-09 MDKLKQFLIDYNLDFTNKTVIVACSAGPDSLALVDMLKDWPLKLIVAHFDHQIREDSYLE TKLLQQYCQKNKLMLCVEKWSKHVNKTEAAAREARYNFY >gi|313656766|gb|GL545251.1| GENE 1097 1030677 - 1031027 267 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161506858|ref|YP_001576812.1| putative ribosomal protein [Lactobacillus helveticus DPC 4571] # 2 116 3 118 120 107 45 2e-21 MRLEVGQRIIGKINNITDYGIFVSFKNKSGLIYKDDFKDGWEREKLRFQPGQEIKVVITQ IKDKKIALSLKRVNDPDLVDPNNQFKDLSKEAFASTLTELAGQAKKTIKDLRDGLN >gi|313656766|gb|GL545251.1| GENE 1098 1031024 - 1031395 341 123 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0273 NR:ns ## KEGG: LGAS_0273 # Name: not_defined # Def: septum formation initiator # Organism: L.gasseri # Pathway: not_defined # 2 121 3 124 125 104 54.0 1e-21 MRGPRISDASDKELARLRQKGKKATEEVHRKRRVRYLTVFSLIFLILGVQLILNITTTHR IKSEIQTNKTSLVQQKERNRRLKIKRNNLKDPDYLAKYIRYKFYYSKKGERIYNIPENSK DNQ >gi|313656766|gb|GL545251.1| GENE 1099 1031462 - 1031704 308 80 aa, chain - ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 79 17 95 105 82 55.0 1e-16 MRLDKYLKVSRLVKRRTVAKEMADQGRIEVNGRVVKSSYDVKLDDVISIGYGSRLVKARV LNIREITKKDEASELYELVD >gi|313656766|gb|GL545251.1| GENE 1100 1031716 - 1033302 1326 528 aa, chain - ## HITS:1 COG:BH0069 KEGG:ns NR:ns ## COG: BH0069 COG1197 # Protein_GI_number: 15612632 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus halodurans # 1 525 646 1170 1181 592 56.0 1e-169 MDRLLVGDVGFGKTEVAIRAAFKAIQDNKQVAFLVPTTILAQQHFDNISDRFKDFPVNVA LLSRFQSNAEVKEILEGLKVGKIDLVVGTHRILSKDVEFKDLGLLIIDEEQRFGVKHKER LKELKNNVDVLTLTATPIPRTLHMSMVGVRDLSVMETPPVNRYPIQTYVMEQLPSVIREA CLREMARDGQIFYLHNRIGDIDETVEHLHQLVPEAKIEAIHGRMSENQMADILYRFLHKQ FDILVTTTIIETGIDMPNVNTLIIEDADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKV LTEVGEKRLEAIRDFTELGSGFKIAMRDLSIRGAGNMLGQQQHGFIDSVGYDLYAQMLDD AIKARKGGHKLIKTNSEIDLGIEAYIPDSYISDQQQKIEFYKKIKVISSEEELNSIEDEL LDRFGDYPVATESLLAIAKIKYLADLAGVLEIRYIKDKLKVEFNLESSKHLQGPNIFKAL EHVNMKASVALTEQQHLTVLLTKGVMKRRVLFNELETFLTDAGELVDK >gi|313656766|gb|GL545251.1| GENE 1101 1033329 - 1035200 1067 623 aa, chain - ## HITS:1 COG:lin0246 KEGG:ns NR:ns ## COG: lin0246 COG1197 # Protein_GI_number: 16799323 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Listeria innocua # 3 595 4 607 1179 375 36.0 1e-103 MKLTEIVAQDKELGAFLINTQKNKKSLLTGINERNLPLILLELLKQNNVLIIIEENENKA QRLVDNLAPILPEEKVQYFAVDSTLATQRATASPDELAQRIKALHLLLSGDSGIVVTTAQ GLEYQLNPKDSYIRGNKLIKVGQEYDLKELNKWLVASGYRKEALVAKPGEFAVRGDILDI YPLDQVSPIRIEFFGDEVDTIKSFDVNTQKSILEKEEIVVLPACDRIFETDNLKKAYNLI KDEIKESPNSESAEQNFLEVLDELAQGNLPDNYAFLVDYLLPKSCSLLSYLPENGLVVFN DWQAIKKADSEITDQNADFISDEIKAGLMLNSQKLRMNLTTVLRQSKHHRLYLSLFQKGM GQLRFDSLFNWPNREPEQFFSQMPLIKSELNKYKKQGYTVILQADNERRSKQIQSNLIDF DLNLPIVTKENLVEHKLQITVGQFSQGFSLPQIQLVYLTERELFNTQVHKKRKILNLENA QRLRNYNDLKPGDYVVHVNHGIGRFEGIKTLDVDGQKRDYITITYQGHDQLFVPADQLSL VQKYVGSEGHRPKVNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAARESEKGFAFQKIMI CKKPLKMHFLMLKHQTNCDQVMK >gi|313656766|gb|GL545251.1| GENE 1102 1035203 - 1035760 738 185 aa, chain - ## HITS:1 COG:lin0245 KEGG:ns NR:ns ## COG: lin0245 COG0193 # Protein_GI_number: 16799322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Listeria innocua # 1 185 1 184 184 166 42.0 3e-41 MKIIAGLGNPGKKYDRTKHNTGFMCLDNYMAKNGLSLNQNKFEGLFTKEKIAGEDVILLE PQTYMNESGRSISQVANFFKIDPSDILIIQDDMDMPIGKIRIRANGKSGGHNGIKSIIRD LGTEKFNRLKIGIRHPENTTVVSWVLTPFNNEQQKLMDTAFSTSEDILADFISGKDAGYL MNKYN >gi|313656766|gb|GL545251.1| GENE 1103 1036087 - 1036614 524 175 aa, chain + ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 159 54 210 211 168 50.0 5e-42 MHIYRHKSQGGDMSLPVTHLLKNATKTIKVDSPFFKVFFNIKDLPYIAVLDEDNKFYGIL THNRLLSMLSDAWNLKSSSFVLTVLSDNERGNLIKMSKIISKYTNLASVITLDGNLGVSD YVRRTLFTLPAGVSEETLKTIVQKLEKKGYVVAEIEDLQTGSTVRKDEDPDQFTL >gi|313656766|gb|GL545251.1| GENE 1104 1036661 - 1037788 1317 375 aa, chain - ## HITS:1 COG:L0103 KEGG:ns NR:ns ## COG: L0103 COG0787 # Protein_GI_number: 15672826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Lactococcus lactis # 1 373 1 366 367 324 46.0 2e-88 MVPAIHRPAEVEVDLLAIKKNLQEEKAHLKPGQKLFAVVKANAYGHGAVKVAKMAARNGA EGFCVAVLDEAFELRDSSIVDPILVLGVTPANEACIAAAHNISLTAPSLEWLEAADKALA KKDMVLKIHLAIDSGMGRIGFSEDQEFIAANEFLRNSTHFIVEGMFTHFASADSRDSHYF DYQVKRFNHLKNILSIKPKWIHVANTASSIFDKNIHSDIVRFGIGLYGLNPSSNPASPDL ESEINLKPALSLVSELSFVKKVHSGYGIGYGSTYVADSDQWIGTVPVGYADGVIRKLSGF KIKVGAHYCPIVGRICMDQLMVLLPEKMPVGTKVVIYSNNPEDPNFIKKAADYVDTIHYE LACLLSDRLPRIYHE >gi|313656766|gb|GL545251.1| GENE 1105 1037701 - 1038138 116 145 aa, chain - ## HITS:1 COG:SP1699 KEGG:ns NR:ns ## COG: SP1699 COG0736 # Protein_GI_number: 15901533 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Streptococcus pneumoniae TIGR4 # 6 102 6 103 120 95 47.0 2e-20 MFHSIGSDITHLSRFEKMTKRDLFAKKVLTPKELQVYHALKGRRQLEFLAGRFSVKESFS KAWGTGLGEVSFQDVETLNASNGRPITTSTLYNGRILVTISHDLDTCITFVELEDYKWYQ QFIGRLKSKLTYLRLKRTYKKKKHI >gi|313656766|gb|GL545251.1| GENE 1106 1038209 - 1039663 1648 484 aa, chain - ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 438 3 440 516 570 65.0 1e-162 MKFTELGLNDALLKAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLPIL QKIDNKEHFIQALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALKQTP AILVGTPGRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAKNREHTLLF SATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRLIDVQAPD LAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILVATDVAA RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEIGYMRTIENLTKK KMSPLRPPTDDQALQGQLAIAHKQIEDLLKADLTKYTEEASELLDNYSAVDLVAAFLKNL SKDADEIKVKITPEKPLPYKGHGRRRGHRNNFKHGGDRNERRHRKSNVRRGKHDFVIKNK KNHK >gi|313656766|gb|GL545251.1| GENE 1107 1039674 - 1041041 1403 455 aa, chain - ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 453 463 348 41.0 1e-95 MKMQLAEIAKALDTTIEGNSDPVISSVAFDSRKLNENSLFVPLKGERDGHDFINSAIANG AVATLWEKGHPNKPGNFPLIEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMV AAVLSKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKPDV CVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLLRQRAEKITQVKSTF GFSDQDTIHALEFKSYMHHASFVTNSSEQKFSIPMIGKHNVSNAMAAICVGHHFGESDDE IAASLSDFTPTANRMQWRKGDVGEDIMDDIYNSNPTAAKAVLTSFGQVEVPEGGRRIAVL GDMLELGAASAELHASLADKLDPLVINEVYLYGPEMKNLEEAIKGKYVPDTLHYYPQDKM ERMIDDLKNDIHSNDIVMLKASHGMHLDKVLERLL >gi|313656766|gb|GL545251.1| GENE 1108 1041139 - 1041396 442 85 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525693|ref|ZP_03955742.1| 50S ribosomal protein L31 type B [Lactobacillus jensenii JV-V16] # 1 85 1 85 85 174 100 9e-42 MKQGIHPDYQQVVFMDSATGAKFLAGSTLNPSETIEFEGKTYPLVRVEISSDSHPFYTGK QKFAQADGRIEKFNKKYGLSSKENK >gi|313656766|gb|GL545251.1| GENE 1109 1041497 - 1041991 523 164 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854502|ref|ZP_04644840.1| ## NR: gi|238854502|ref|ZP_04644840.1| hypothetical protein LACJE0001_0547 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_1447 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00846 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0547 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00846 [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_1447 [Lactobacillus jensenii 208-1] # 1 164 1 164 164 303 100.0 3e-81 MNKVSYPEFSELINYYQALTGNELINKQKKQLLKSLRLAKKGDYHHALADLRTEAEKLTK YWLEQKYIKPDLNFNQNISLLRHSGVSQNVINTLFEIKAAGNKAVHELEANEEVTKKCFY DYFKVLNTCSRQFVNQESWVIEKAFLIVVVIILGLFLLKLGQPN >gi|313656766|gb|GL545251.1| GENE 1110 1041984 - 1042181 91 65 aa, chain - ## HITS:1 COG:no KEGG:SSUST3_1861 NR:ns ## KEGG: SSUST3_1861 # Name: mutX # Def: mutator protein # Organism: S.suis_ST3 # Pathway: not_defined # 2 64 88 150 151 77 55.0 2e-13 MFKTNHFAGKLQSSREGEVFWIERKDLENYQLADGFDSMLEIFENDNLSENCWYLKDSQW TYKNE >gi|313656766|gb|GL545251.1| GENE 1111 1042100 - 1042432 322 110 aa, chain - ## HITS:1 COG:SP0740 KEGG:ns NR:ns ## COG: SP0740 COG0494 # Protein_GI_number: 15900635 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 71 1 85 151 93 52.0 1e-19 MDRSEKVVLTNMCMVYDGSKILVENRVKKDWPGVTFPGGHVEHGESIVDSTVREVKEETG LDIKDLKFVVLNNFLMMILGQLFFCLKQIILLVNYNLVVKAKFSGLNARI >gi|313656766|gb|GL545251.1| GENE 1112 1042509 - 1043744 1147 411 aa, chain - ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 408 1 394 399 192 30.0 1e-48 MKKIWLVTKETFIRQTKGITFILSVLAPVIFMAIIFGVVFISQKLSGSDNQIDNAIVISK NYAPAVKDLSNFEVKSEAAAKKALAAEEIKGYVKVDVAKSGQISASWLGKEAMDSGDKSN LMASLQKLQQSLNIQATGLTAKQLKTLNQSVKISEKISGHNGLAKEATKADLTAKQAKSI AANVFIWLTYFILLTYISTMAQEIATEKGSKIMEIIFSSMRGGDYFVGKVLGVLGVFLLH VLAYIALLGVAVIAGPQINMFASFFKSNQELISQVMNNLLSWNLVLLLLSVILSIVIAAF CGALANRVEDLQKVLAPIMYLVIISLVAAPNLSKGDSLFAQVISCLPLFSGFILPGRIAE GVSGTPELVIATIISVVTLILTSYLVRKAYPKLILQTDDGSIIKKIKRLRG >gi|313656766|gb|GL545251.1| GENE 1113 1043741 - 1044076 81 111 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 105 194 297 305 35 28 3e-15 HNMDNVERLCDKVVMINHGQLVLNGTIQEIRDSYPKEYLYLKKAGLNREQVASLPGCESF VQRHDGVWAIKLTDEKYGPEIFDLLSHGEYIQTFSQEAPTLDQIFKMEAAK >gi|313656766|gb|GL545251.1| GENE 1114 1044031 - 1044645 180 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 7 190 9 197 309 73 28 2e-15 MVKQTHLVIDQVKKSYRTKEVLKGISFDCKPGQITGLIGKNGSGKTTLFHSILHFLDYEG KITLNGQFFSSADYNIVGYLPEERSLMPKLTVLEQVRYLASLKGMSNSDIKAALPAWMEK LQVVGKMSDKIKSLSKGNQQKIQMIATMIHQPQILILDEPFSGLDPVNVDLMKDIILDQA KRGATVIFLTITWIMLNGSATRWL >gi|313656766|gb|GL545251.1| GENE 1115 1044793 - 1045776 1016 327 aa, chain + ## HITS:1 COG:no KEGG:LAF_1481 NR:ns ## KEGG: LAF_1481 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 10 325 6 323 367 362 57.0 1e-98 MKKAIKYTIRSLLGLLAIVIITLLGYAIYMQENYYRIPDHQVIHIKNNQAKTLATNKTYT LTTYNVGFGAYNPKYSFFMDTGEMKNGAKTRGKYGTAVSKASELADTKGTIATIKKQNPD FAFFQEIDTNSTRSFGVNQVKMAENAFDDMGSSFAQNFHSAYIAFPLNNPHGFARSGILA LSKYHIDSSERRKYFVSSSLIEKFVDLDRCFNVMRLPVKNDKELVLINSHMSAYDKGGLS KKKQLALLNHVMKAEIQKGNYVICGGDFNHAFGTKYVAHFKSEQKQHDWLAVLSQKDLAS SGMRMITAQNADDVPTCRGSDIPYKKA >gi|313656766|gb|GL545251.1| GENE 1116 1046924 - 1047874 1362 316 aa, chain + ## HITS:1 COG:Cgl1931 KEGG:ns NR:ns ## COG: Cgl1931 COG1957 # Protein_GI_number: 19553181 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Corynebacterium glutamicum # 2 296 3 299 316 275 50.0 7e-74 MKKVILSLDTGIDDAMALAYTIAKDELDLIGVVGTYGNVYTEQGAKNALALLKMLGKTDI PVFLGNDHAIDQDHFDRMEVSADIHGENGIGQVSIPAARRPVETTSGIDFIIEATKKYGK DLLVIATGPMTDLALVLQKYPTFKDEIGQVVIMGGALTVRGNVSPYAEANINQDPLAAKI LFESGTPVIMVGLDVTMKTPIGLADTQKWRETQTTVGEKYADIVDYYIHIYDKYSPYLHG GSLHDPAAVCAAIHPEWFTFLSMHLTCETEGPSRGRTIGRLEDLRKAKPNVKVAIDIEAD KVSRDICDSLEELFRK >gi|313656766|gb|GL545251.1| GENE 1117 1048542 - 1049063 511 173 aa, chain + ## HITS:1 COG:BS_ycnB KEGG:ns NR:ns ## COG: BS_ycnB COG0477 # Protein_GI_number: 16077452 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 2 135 1 134 472 125 47.0 3e-29 MVSTDIHGNKYNRTLLMTVLITGSFVTILTATLLATAYPSMMKTFNIDASTVQWLTTGFT LVNGIMIPVSAYLINKLSTKFMYISALIIYLLGTMLAYWSPNFQVLLAGRLVQAIGAGVS MPLMQSIALMIYPPENVVLPWEQWGLQSEWHQQSDQLYQVILLTTLPGGIYSA >gi|313656766|gb|GL545251.1| GENE 1118 1048961 - 1050016 1114 351 aa, chain + ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 334 147 480 493 328 56.0 8e-90 MGTMGLAIGMAPAIGPTLSGYIVDHFTWRDLFGMIIPIISVVIIAAFFLMKDVLPNTSPK LDFWSVVTSIAGFGIMLYGFAEVGSKGWDDTTVIASLVIGAAIVALFAVRQFKLEEPFLN LNVFKTGQYTLGTIISSLSYMGMLAAEMILPLYIQNVLGKSALQSGLILLPGAIAMGVMS PITGRLFDKYGAKHMVITGAVMLIFGTSAFLFIGPNTPTIYITAFYAVRMFGVAMMMMPV TTAGMNALPLNLMTHGTAVNNTVRQVAGSIGTAILTSVLTNVANSNTPAKSLLTQNPLAY KDKAIDAVILGYKAAFMVAIVFAVLLIFAALFLRKGNIAKKEEITNGKEAR >gi|313656766|gb|GL545251.1| GENE 1119 1050016 - 1050585 719 189 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00700 NR:ns ## KEGG: LCRIS_00700 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 187 1 186 186 91 32.0 2e-17 MAILLLIIGLVIYFIFNVIPITKFHYLFAYLGLALALTSGIGMMANENAHFGMEAKTTNK QVTIKPTASVGQLNLLVYKQVGNKGPKVYIYNGKKKHTQVNTKTINKVKTGYTTATLVTQ ETRYHFKNKFYKLLFGFLGKENQLKQRVNTFEVPNTWKVLSTSQVTKLKKQMIAMQKKQM LMQAQMQNK >gi|313656766|gb|GL545251.1| GENE 1120 1050639 - 1050881 65 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854513|ref|ZP_04644851.1| ## NR: gi|238854513|ref|ZP_04644851.1| hypothetical protein LACJE0001_0559 [Lactobacillus jensenii 269-3] calcium-sensing receptor [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_0559 [Lactobacillus jensenii 269-3] calcium-sensing receptor [Lactobacillus jensenii 208-1] # 1 80 1 80 80 109 100.0 8e-23 MKLIKLLLTKHYEFESWLDNYFWLSHLVKANRLYTAGILLYNFICLFFTQLLFVGWREFF IILVLLNVVLFGVRFFEIKK >gi|313656766|gb|GL545251.1| GENE 1121 1050901 - 1051509 581 202 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 13 200 3 194 194 147 41.0 1e-35 MIKLNKTSIASLLAIALAIVLANTAMLDQAKTKEVASSSLKVTKSKANKAKEIKINWQKP SENKPYPKVADYPKMWVKVSKAKQRTYLMNGSKILYTMYCSTGSGGDRATPEGTFHIQAE RGDFFYNQESGEGAKYWVSWKDHGVYLFHTVPTDSQGHFVESEAEKLGKNANSHGCIRLS VPDAKWFYENIKEGTKVVITNS >gi|313656766|gb|GL545251.1| GENE 1122 1051569 - 1052324 465 251 aa, chain - ## HITS:1 COG:L51063 KEGG:ns NR:ns ## COG: L51063 COG1085 # Protein_GI_number: 15672818 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Lactococcus lactis # 3 250 8 258 261 247 47.0 2e-65 MTPLVFNTQIAKGKPSNNDGCPFCDIEKLTGIIEKQNQFIWLENKYQTLLDTYLTLIIES SDHLGDITNYSYEYNRSLIHYAVDKWLKLDNSKQYRSVAMFKNFGPLSGGSLRHPHLQIV GFKKADIYSEVHSENFTGLSIKKGPNFEVNMSLQPIMGYTEFNVIISNMDKLDLFSDNIK DLVSFCMSEAFYQGRCKSYNLFFYRIDGKVICKLVPRFITPPYYIGYRQSQRNSDINLEK IKTDFFNYIEN >gi|313656766|gb|GL545251.1| GENE 1123 1052441 - 1053991 1776 516 aa, chain - ## HITS:1 COG:lin1081_2 KEGG:ns NR:ns ## COG: lin1081_2 COG0519 # Protein_GI_number: 16800150 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Listeria innocua # 202 516 1 315 315 497 75.0 1e-140 MSVKNISDFDKIIVLDFGSQYNQLITRRLRDFGIYSELLPNDFSIEKIKEMNPKGIIFSG GPNSVYDEGSLKVNPEIFELGIPILGICYGMQLMAHDLGGKVEKADHSEYGRADIDVTDA TKLFEKLPAKQTVWMSHGDLVTSVPDGFETLASSPNCPISAMANVAKKFYGIQFHAEVRN SEYGLDILKNFAFNVCGARANWTMDDFIDLEVAKIRKQVGDGKVILGLSGGVDSSVTATL LHKAIGNQLTAIFVDHGLLRKDEAKQVMAALNRDLGVNIIKVDAKKRFLDKLKGVSEPEQ KRKIIGKEFIEVFNEEAKKLNGVKFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPKDLG FELVEPLRKLFKDEVRELGEKLGIPHELVWRQPFPGPGLGIRVIGEITEEKLEIVRETDA ILREEIKKAGLEEEVWQYFTVLPGIRSVGVMGDGRTYDYTIGIRAVSSIDGMTADFSKLP WEVLQKVSTRMVDEVDHVNRVVYDITSKPPATIEWE >gi|313656766|gb|GL545251.1| GENE 1124 1054338 - 1054598 195 86 aa, chain + ## HITS:1 COG:lin1998 KEGG:ns NR:ns ## COG: lin1998 COG0503 # Protein_GI_number: 16801064 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 82 1 82 192 107 64.0 4e-24 MKLLEERIKRDGQVLDGDVLKINSFLNHQVDPELMMELGKEFARLFKDAGITKVLTCEAS GIAPSVMAAYVLGVPMVFARKKSHQL >gi|313656766|gb|GL545251.1| GENE 1125 1054742 - 1054915 210 57 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_01150 NR:ns ## KEGG: LAC30SC_01150 # Name: not_defined # Def: xanthine phosphoribosyltransferase (EC:2.4.2.22) # Organism: L.acidophilus_30SC # Pathway: Purine metabolism [PATH:lai00230]; Metabolic pathways [PATH:lai01100]; Biosynthesis of secondary metabolites [PATH:lai01110] # 1 57 136 192 192 87 75.0 2e-16 MVSIANQAGAEIVGVGAVVAKDFQGGSDWIKKQGLRFEALANIASFENGEVHFVGEE >gi|313656766|gb|GL545251.1| GENE 1126 1054915 - 1055868 303 317 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 8 305 15 308 447 121 29 3e-34 MKEVSHKKAAILGLQHLLAMYSGAVAVPLLIGTALKFNTTQMTYLVSIDIFMCGLATLLQ LFRNCYLGIGLPVVLGCAIQAVAPLELIGQKFSINTMYGAIIVAGIFVFCIAGWFSKIKK LFPPVVTGSLITVIGLTLIPVAFQNMGGGTATAKNFGDSKYLITAFATILVIILIELLAK GFLKSIAVLIGLIAGTVLASFLGMVSLTSVLQASWFHLPQFFYFGKPEFEWSSSVTMIII ALVSMVESTGVFFATSDLLKQDVNEDDLKRGYRAEGLAQIFGGIFNTFPYTTFSQNVGLL QLSGIKTSVQSFGLLAY >gi|313656766|gb|GL545251.1| GENE 1127 1055844 - 1056197 117 117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 1 107 314 417 447 49 27 3e-34 IFWAAGLLMGLGLLPKIGAIVTIIPISVLGGAMLVMFTMIAVQGIKMLLKVDLSDNRNIL VIALSVGLGLGVTSYPQIFQHLPQTVQLFLGNGIVVASLSATLLNLIFKGKEGLNSK >gi|313656766|gb|GL545251.1| GENE 1128 1056305 - 1057729 1786 474 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 474 6 474 474 547 56.0 1e-155 MKEQTECTTILVGKKATIDGSTMIARSEDGGRTIIPESFKVVNPEQQPKHYQSVISKQVI DDEDLALTPLRYTSAPDASGKNGIWAAAGINSENIAMTATETITTNSRIQGIDPLLTTEE GGLGEEDFVTLTLPYIHSARDGVKRVGYLLEKYGTYEMNGMAFSDKDEIWYLETIGGHHW AARRIPDDAYVIAPNRLNIDEFKFDDPDFVCSSDLKELIENYNLNPDFEGYNLRHIFGSS TIKDAHYNNPRAWYIHNFFNPEFGGKPSDQDQPFICHANRKISLEDIKWAESSHYQDTPY DAYGEQGTAEQKKTFRPIGINRNFETHVLQIRNNVPAEIAGVQWLAFGLNTFNTFVPFYT NITTTPASWQTTSQFDLTKIFWVNKLAAQLGDTNYRVYGELEADFEQKSLAACHKIQHDT DAAVKDLSGKDLQTKLEAANDKMAEVVYSNTVELLGQMVDEGHGLMTLKYDLLD >gi|313656766|gb|GL545251.1| GENE 1129 1057845 - 1057985 86 46 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854520|ref|ZP_04644858.1| ## NR: gi|238854520|ref|ZP_04644858.1| alpha/beta hydrolase superfamily enzyme [Lactobacillus jensenii 269-3] alpha/beta hydrolase superfamily enzyme [Lactobacillus jensenii 269-3] # 1 36 149 184 194 75 100.0 1e-12 MQIPYQQLLPLASNDKIKIVLLDGFKHREANQKMDNLLKKVLDLLD >gi|313656766|gb|GL545251.1| GENE 1130 1057952 - 1058341 131 129 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0285 NR:ns ## KEGG: LBUL_0285 # Name: not_defined # Def: alpha/beta fold family hydrolase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 3 116 7 120 168 101 47.0 9e-21 MLKNIFIINYPVVKRQGGVIDFQYVYQEIERLRIEKTNYELYLIGESYGGYLASLFSKYN LVEKIICISGFVSIKYQALFSSERVWLTSYLSPEASDFYDIHKKNLVRTAITFLMGLKIC KYHINNFYH >gi|313656766|gb|GL545251.1| GENE 1131 1058470 - 1059270 812 266 aa, chain - ## HITS:1 COG:SP1063 KEGG:ns NR:ns ## COG: SP1063 COG0842 # Protein_GI_number: 15900933 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 11 237 12 237 266 147 35.0 1e-35 MNPANFRNISLGLRSIKIVANNEWRAFVHNKGLLLSMFMQPLITYGLLVMALNENLSAVH YAGLTLPYKQYALTGVLTFFMTTQMSQAMYRATVDKEYGLLAIKFTNGVQPWHYLAGMSF FPIIGLLFQSAILIVLGLLTGGVYNLLYLLLSLLVLIVSLEFWSTLGIILSTRISSYEQR DVIMTLIFSPISYAAPTLYVFSDNSPLIIKILSAINPLTYQLKALRAVAFGSFNLMEIVS AILISIAMIVLAQVILKRMPLSLAER >gi|313656766|gb|GL545251.1| GENE 1132 1059271 - 1059972 222 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 204 1 214 245 90 28 3e-16 MIIANKLRIGYKTTTVVNDLNFKLEEGKFIALIGANGAGKSTLINTMIGIVKPLAGRINW QVETDKKNPFNAVGFSPQSQLIDWYTNVFDNVIQGPLLAGYKMSVAKKQAEFALELLDIV DLKDKPVDHISGGQQQRVQIAREIARKPKIYILDEPTTGLDVETGEKLFRYLQTEVKNGA LVLTSSHDLTLLESYADQVLFINEHEQQFFGSLKAFLADGTSLRDKYLQERGN >gi|313656766|gb|GL545251.1| GENE 1133 1060068 - 1060319 372 83 aa, chain + ## HITS:1 COG:no KEGG:Ldb0332 NR:ns ## KEGG: Ldb0332 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 79 1 79 81 94 63.0 2e-18 MSKEFKILIDRLQSDPKFIGDFLANPRSFLEKLDISKEEKAALLSRDVAALNDLGLTTTQ AAGALSGAHSQRCSSNRTTTTFE >gi|313656766|gb|GL545251.1| GENE 1134 1060326 - 1060634 181 102 aa, chain + ## HITS:1 COG:no KEGG:Ldb0333 NR:ns ## KEGG: Ldb0333 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 21 102 13 94 94 67 42.0 1e-10 MFATELYRDVDKTLVQLLKIFISKFQSNCELHIRSESYDLFNDFIIKSYKLEHSKRYSIS ELAKVLRNAKIPDETISYLITRYIDGLYLLAHSNKKEQGFIP >gi|313656766|gb|GL545251.1| GENE 1135 1060631 - 1061947 634 438 aa, chain + ## HITS:1 COG:SP1061 KEGG:ns NR:ns ## COG: SP1061 COG0515 # Protein_GI_number: 15900931 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Streptococcus pneumoniae TIGR4 # 10 359 20 359 448 138 32.0 2e-32 MKKLSLSKEYDLLLKQNNICRLNSSDIWAYPNFPHQIVNNYGWKIHISAVLTNAIDIAQR FFNLNRKKCWDFKIIASISELERLNLGYYGNSQVGKFITIYPKPQNVLETLEILHYYFHN EIGIAVGSDKSYKLNSNIYYRFGTLLSDIKNIDHRDKTLHPFKDAQKIPDYDLQHYHKLP SRYLILKVLKHLGPSGVFLGLDVKFMKKVIIRYACKYFNIESSNIDEADRLLSSSNILNT NEILKDSGFENIIDTFYLDNSVVIVTEFIEGESLDELAMSNKLSTLSLKERLNIFNQILF LINKLNKLEISFRDLSFSNVILSQDKQAKIIDFNYAISKSGISCFAKNSINPAGTYGFYN PYEQSIVEFPDRFSLAQFLYFLVYPDTYISFMKNIDIDTSYSEIVSYLKKAQKKKLPKDL LNTYSKLIHGKYIDKLNL >gi|313656766|gb|GL545251.1| GENE 1136 1062292 - 1063557 1577 421 aa, chain - ## HITS:1 COG:SP1081 KEGG:ns NR:ns ## COG: SP1081 COG0766 # Protein_GI_number: 15900950 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Streptococcus pneumoniae TIGR4 # 1 418 1 416 419 420 56.0 1e-117 MKQMIIHGGKPLTGEVWIGGAKNSTVALIPAAILSHTPVTLECVPRIADVDNLMDLLKEM DVKCDFKETTLHIDPTEIKMSPLPAGKIKSLRASYYFMGALLGRFGKAVVGFPGGDDIGP RPIDQHIKGFEALGAIVKNENDQIIIKAPEEGLHGNQIDLAMPSVGATMNIIMASVTAQG QTIINNAAKEPEIIDLATFLNNMGAVIRGAGTETIRIDGVSRIEAKIPHTIIPDRIEAGT YISLAACIGNGIRIHNIIEEHLDSYLAKVEEMGVVIDADEDSLYVYPAGDLKMIQVKTDP YPGFATDLQQPITPLLLTAKTGEGVVIDNIYPKRTRHIPELQKMGANIKVEDNIILVHPT SELHGACVHADEIRAGASLMIAGLMADGETVIDNADNILRGYDRVEEKLRKLGADVTIQD A >gi|313656766|gb|GL545251.1| GENE 1137 1063677 - 1064918 1561 413 aa, chain - ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 405 129 530 535 545 63.0 1e-155 MRAGQTTDSDVVISEIGGTVGDIESTPFMEAIRQMKREVGADNVMYIHVTLVPYLHAAHE MKTKPTQHSVATLRSIGIQPNMLVLRAEKEVGQELKNKIANFTDVPVEAIMESIDAPSLF EIPLNFQKQGMDQLVCDHFNLTSPKSKADMEEWVKLEKRSTSLKYKTKITLVGKYVELED AYISVTEALKHAGYLYNSEIEINKVQAEDITEDNIADFMKDSDGLIVPGGFGLRGLEGMI TAIKYARENDIPFLGICLGMQMATVEFARDVLGYKDANTTEADPETKNNIIDLMADQEGQ DTIGGTLRLGLYPARLKKGTKTYKAYDEQEVIQERHRHRYEFNNKYREEFEKHGMIFSGV SPDNHLVEIVEIPTKKFFIAAQYHPEFLSRPHKPEGLFKAFIGAASGLEEDKF >gi|313656766|gb|GL545251.1| GENE 1138 1064885 - 1065295 534 136 aa, chain - ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 126 3 127 535 228 84.0 2e-60 MTKYVFVTGGVVSSLGKGIVASSLGRLLKNRGLKVTMQKFDPYINIDPGTMNPYQHGEVF VTDDGTEADLDLGHYERFVDVRTSKYSNVTTGKIYSEVLKKERRGDYQGATVQVIPHITN MIKKKLCVQAKLLILM >gi|313656766|gb|GL545251.1| GENE 1139 1065438 - 1065986 809 182 aa, chain - ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 134 1 134 191 97 51.0 9e-21 MGLADFEGKKREELSLIEVARAILEDHGKRMAFADIVNAVQEYLGTSDEEIRERLPQFYT DMNTDGEFISMGDNVWALRSWFPYESVDEEVNHPEDEDDEPRKKHHRKVNAFIASSDDDD IIDYDSDDPEDDDLDTDEDENTDDFDAADDDDFDDPDDDDELPDGIEGQLSELDDDEDED DE >gi|313656766|gb|GL545251.1| GENE 1140 1066257 - 1066439 81 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854529|ref|ZP_04644867.1| ## NR: gi|238854529|ref|ZP_04644867.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 55 1 55 135 92 96.0 9e-18 MKEVDLKFKSTITQEQDSESFQKSAKAQVEELEDGWRLKYLEDDQIPVKILLKNKTNAYN >gi|313656766|gb|GL545251.1| GENE 1141 1067069 - 1067926 780 285 aa, chain + ## HITS:1 COG:SPy0621 KEGG:ns NR:ns ## COG: SPy0621 COG1078 # Protein_GI_number: 15674697 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pyogenes M1 GAS # 1 275 159 433 433 278 49.0 1e-74 MISSQADADRMDYLQRDAYFTGVTYGSFDIERLLRVIRPYSDGICFTNNGMHAVEDYIVS RYQMYQQVYFHRINRSLEVVLNKLLERARYVYKSNTLLVTPSLQKFLDGSWTLKDYLNLD DGVMETNFSIWRESGDEILADLASRYLFRKPFASCSVNQETRNLVPKLKNYIKEAGFDPN YYTALTSAFDEPYDAYKPTGKNANSQIEIMQDDGSLIELSELSPLVKALNGTIQGSENFF FPKVMLSQNDEPQIFDPLYQEFQKYVKNGALRYQRKPTKKNNSNN >gi|313656766|gb|GL545251.1| GENE 1142 1067970 - 1069244 771 424 aa, chain - ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 3 409 5 420 428 210 33.0 4e-54 MSSYNDCIKFSLDIQDPNITFNAHFFKLINGIKYKVFQATLIQPACPFCGSVNLIHNGHL QTNIRFITSNASSPVIIRLNKQRVLCRDCNTRSMAKSKLVNKYCSISNPAKRKVLSALTE DRSMTSIARENNLSVNTVQRVLASCSHRFIDNYNYLPEHLAFDEFKGVDKKLHFIYLDGQ KHEVVQILRNRYKKSLLKYFGKFSPSARANVKTVSMDLNFYYQNIVRACFPNAEIIIDRF HMVQMLTRSFNSLRVLVMKSFDKRARQYQLLKSPWKLYLKSFVDLDKIHPHYNWHFKDYL TQEQVVMEGISCDPRLDNAYNLMQDFMAALKARDTNSLKEIINSKAEVGTLMHKTLLTFK HNLRAVLNGARFSYSNGCLEGFNRKIKQIERTAYGYSNYINLLTRIRLEENKVKEKEPSN LYIA >gi|313656766|gb|GL545251.1| GENE 1143 1069421 - 1070386 1175 321 aa, chain - ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 6 315 9 317 317 422 68.0 1e-118 MSYKDDIKLFALNSNTPLAQKIADRIGVPLAKSSVQRFSDGEIQINIDESVRGKDVYLIL STSAPVNDNLMELLIMIDAVKRASARAINIVLPYYGYARQDRKTRAREPITAKLVANMLE AAGATRILSLDLHAPQIQGFFDIPVDNLMGAPLLADYFLSNHLEKGAVVVSPDHGGVTRA RKLAEFLKAPIAIVDKRRPKANVAEVMNIIGDVSGKRAIIIDDMIDTAGTITLAAQALID AGATEVYASATHAVLSGPAIDRLNNSKIKSLVLTDSINQPEEKKIDKLQLVSVGPLMGDA IKLIEQHQPVSPLFNTRYREN >gi|313656766|gb|GL545251.1| GENE 1144 1070469 - 1070921 384 150 aa, chain - ## HITS:1 COG:SPy1180 KEGG:ns NR:ns ## COG: SPy1180 COG2851 # Protein_GI_number: 15675152 # Func_class: C Energy production and conversion # Function: H+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 1 149 325 464 468 118 42.0 3e-27 MVLGAGVLMGVLNGPVNVKGEYVSGMSHAIAIVLTQMIPSSFGKYFAIIIAVISAPGTYL LNNDAFYYGVLPPLAATAKAYGFSNLQIGFAALMGQAFHFLSPLVPFIYLLMDKTKITLG EYQSYIFRWCIGIFICFMVVGLILGYLPIL >gi|313656766|gb|GL545251.1| GENE 1145 1071011 - 1071805 763 264 aa, chain - ## HITS:1 COG:BS_yxiQ KEGG:ns NR:ns ## COG: BS_yxiQ COG2851 # Protein_GI_number: 16080957 # Func_class: C Energy production and conversion # Function: H+/citrate symporter # Organism: Bacillus subtilis # 5 251 1 242 426 216 49.0 4e-56 MNTTLMAFLGLAMIVTFMALIMAKKLSAFTSLVIVPILFGVLAGYGFFDTLTYAMAGIKS VASTFAMMTFAILYFGIMLLTGLFDPMVDKVVKWVKGDPLKVLVGTAILSAFVSLDGDGT TTVMIVCTAMIPIFDRLKIKKIYLATLIILTNGVMNLIPWGGPTARVMTVMHLDASKILP PLLPGMILSIIYTLGVAYYLGKKERRRLGVQENVEHVAEHYESEEEEENLKRPNLIWFNL ILTIALVAALVLGKADSAIYLALV >gi|313656766|gb|GL545251.1| GENE 1146 1071824 - 1073209 1675 461 aa, chain - ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 2 448 3 449 457 500 57.0 1e-141 MKKFVVVLAAGKGTRMKSKLYKVLHKVCGKTMVEHVVKAASGMKPEKIVTIVGTGAEDVK KVLAGKSDFAFQEKQLGTGHAVLTAAPVLKNEDGATLVVTGDTPLFTTETFENLFNYHQE KENAATVLTAEAPNPFGYGRIIRDEQGNVLRIVEQKDGKPEELKVKEINTGVFCFDNKKL FAALKKVTNDNAQGEYYLTDVLEILRNSGERVGAYKMPDFSQSLGVNDRVALANASKIMQ KRINEEHMRNGVTFIDPATAYIDSDVKIGNDTIIEGNVVIKGKTTIGSECVITSGSRIVD SEIGNNVTVTSSTIQEAVMHDNTDIGPNSHLRPKAEIMSGAHIGNFVEIKKAIIGENTKV GHLTYIGDATLGKDINVGCGVIFSNYDGVKKFHSTVGDHAFIGAGSTIINPINVADHSFI AADSTITKDVARYEMAIARGRQVNKEDYWHKLPLAQDKDWQ >gi|313656766|gb|GL545251.1| GENE 1147 1073254 - 1074081 865 275 aa, chain - ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 267 3 270 272 271 51.0 1e-72 MKRSERLVDMTKYLLARPHTLISLPFFAKRYGSAKSSISEDLSILKHTLAANEDGVLETV AGAAGGVRYIPFLGKKHSEAYLQELADRIEDTERILPGGFVYLSDVLGSPSDMQRIGEMV ATHYAYKNITAVMTIETKGIPLAEAVSRFLNVPFVTARKRGKVTEGATVSVNYLSSSSSR VAKMELPTKVLPKGSNVLIIDDFMKGGGTLTGMEGLVREFDSTVGGICVLCETTHADKMV DDYLSLVKIDEIDTEKMVIKTSLGNFLEKTDFNRF >gi|313656766|gb|GL545251.1| GENE 1148 1074206 - 1074439 159 77 aa, chain - ## HITS:1 COG:SA0452 KEGG:ns NR:ns ## COG: SA0452 COG4466 # Protein_GI_number: 15926171 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 77 1 77 87 95 57.0 1e-20 MPTSIISIKKLLDSHVGENLTVVAQAGRKKVTKRKGILKSTFPAVFVVDLDQDQNSFERV SYSYTDLLTKNIELKFE >gi|313656766|gb|GL545251.1| GENE 1149 1074680 - 1075387 649 235 aa, chain - ## HITS:1 COG:BS_ksgA KEGG:ns NR:ns ## COG: BS_ksgA COG0030 # Protein_GI_number: 16077110 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Bacillus subtilis # 4 217 2 208 292 171 47.0 8e-43 MANNLPICDPIRTKAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIDGDDQVLEIGPG IGSLTEQMLLRGAKVLAYEIDQDLPEILHNELPQKIGDKYLDDVFKLVMKDILKADFKAD IGNFFDLNKPVKVVANLPYYITTPIIFALAKSDLAFESLTLMMQKEVAERLCASSGNKEY GPLTIFVQTQMSVKMAVMVDHTNFNPQPKVDSAVVVLKPLVQKLMLGILIILIMW >gi|313656766|gb|GL545251.1| GENE 1150 1075377 - 1075940 544 187 aa, chain - ## HITS:1 COG:SPy0261 KEGG:ns NR:ns ## COG: SPy0261 COG1658 # Protein_GI_number: 15674441 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Streptococcus pyogenes M1 GAS # 7 184 6 188 189 144 47.0 9e-35 MELNNKNFDAVVVVEGKDDTARLKQFFPGIETIETNGSAVSTETLALIKKVAQKRDIIVF TDPDFNGERIRKIVTQAVPTAKQAFVTRKEAEPEFSGSLGVEHAAKEALERALVDLHEMK KISDLTFDQYRGLGLATSSRSRKLREAVGVKLGIGYANGKQFYKRLVMFGIGFSELRQTV SEVENGK >gi|313656766|gb|GL545251.1| GENE 1151 1075927 - 1076697 675 256 aa, chain - ## HITS:1 COG:L87336 KEGG:ns NR:ns ## COG: L87336 COG0084 # Protein_GI_number: 15672669 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Lactococcus lactis # 1 256 1 256 257 241 46.0 8e-64 MEIFDAHTHLNDTPFRGKEEVYLQRAADLHVTKMACVGQDLEYNKRALDLAKKFDNVYAI VGYCPDVAKDYCQEWEDLLVEQLKEPKVVALGEIGLDYYWDESPRDLQKEIFRRQIEIAH DLKLPVNIHTRDAFKDCYEILKTSNLEYGAVLHSYNGGPKWTKKFLTLDNVTFSFSGVAS FTKAVDVHASVKLVPLDRLVIETDAPYLTPKPYRGKQNEPAYVYYVAKAISELKGVSLEE VAEATYKNTVTAYGIK >gi|313656766|gb|GL545251.1| GENE 1152 1076697 - 1078685 2529 662 aa, chain - ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 532 4 537 549 705 64.0 0 MADKKTFYITTPIYYPSGRLTIGNAYTTIAADSMARYKRSQGYDTFFLTGTDEHGLKIEQ KAEKAGIKPQEYVDNMAKQYKELWKKLDISYDKFIRTTDADHVKSVQKIFEKLLKQGDIY LGEYTGWYSVEDEEYFTESQLKEVFKDDNGKVIGGIAPSGHKVQLVKEPSYFFRMSKYAD RLLKYYKENPDFILPHSREKEMVNNFIKPGLEDLSVTRTTIDWGIPVPSDPKHVVYVWID ALSNYITALGYGSDDDSLFKKFWPADVHLVGKEIVRFHTIYWPIMLMALDLPLPKQIFGH GWVLIYKDKMSKSKGNAVYPESIVDRFGLDALRYYLMRAIPFGSDGSFSPEDFVERVNFD LANDLGNLLNRTVSMINQYQAGLVTKPASQDDLGSDLAKAANETVVEYQKQMDALHFSQA LDAIWKFVGRANKYIDETTPWVLNKEGKTEELARVMANLAESLRLIAIMISPIMTESPAK IFTQLGLNFEDETQKALEFGAFAWNIKVTEKPTPIFPRRKKDEEVAYIKEEMAKAVSKKQ TRSEKKAAEMEEEKNYISIDDFDKVQIKVGQVVSVEAVEGSSKLLKFQMDFGDEKRQILS GMHKFYPNFEELVGKKILAVTNLKPRKMMGIESQGMLLSSEKGKKVKLAIVGDEHDLGAL LG >gi|313656766|gb|GL545251.1| GENE 1153 1078774 - 1079028 261 84 aa, chain - ## HITS:1 COG:lin2836 KEGG:ns NR:ns ## COG: lin2836 COG0474 # Protein_GI_number: 16801896 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 1 79 773 851 856 63 36.0 8e-11 MVIHALRDRKLPLIKQHATAPVMLATFGAAVIGSYLPYSRVATSLKFGSMPGTFIEIVVG LLILYILLTSLVKRLYLRKEKFLI >gi|313656766|gb|GL545251.1| GENE 1154 1079142 - 1081457 2719 771 aa, chain - ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 16 771 28 784 910 717 49.0 0 MIKIKKKTSSNATNRKFLQEVAMEELTTTFERYDSSGKGLSTSQAEQMREKYGRNEIAKN EHNTKAHFLFEAFMTPFTVVLLILATLSLFTNYILVPASDKDLSTVIIMITMVLISGLTS FIQNVKTNDAVQSLLKMVSVTTNIRRDGKDQELATSEVVPGDIVNLAAGDMVPADMKLIK SKDLFCSSSSLNGESNPVEKIAGQKPDKNQLNEYIDYPNVVYEGTTIVSGSGTGIVFATG SQTVFGKLARQISQTKIKQTSFDTGIKDISKLLITMTAVIAPLVFLINGLTKGNWLDALI FAIATAVGLTPEMLPVIVTSNLVKGSVEMSKHGTIVKKMNSIQNFGSADILCTDKTGTLT QDKVVLERHYDLNMVEKPKVLELSYLNSFYQTGMKDLIDKAVIDAAENELDTKKIKQDYE KIDEIPFDFKRRRMSVVVQNKAGEHLLVTKGAAEEMLEASDFVEFNGQRLPLTKEQEEKV LSNINDMNNDGLRVILLGYKKNPAPVGEFSVKDESELTIVGFLAFLDPPKETAKEALHHL KEDGITVKILTGDNAAVTRAVGKQVGLDVSKIYSGNDLEGKTDAELSKMIEESDIFVKLS PELKTRIIEILKKDGHTVGYMGDGINDAPAMKAADVSISVDTAVDIAKESADIILLHKDL RILENGVRIGRKIFGNTMKYIKITLSSNFGNILSILVASSFLPFLPMLPLQLLILDLLYG TSCLAIPFDSMDAEYLSQPRTWSTKKLPKFMFYFGPHHQSSILSLSPYFTL >gi|313656766|gb|GL545251.1| GENE 1155 1081748 - 1082284 169 178 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00214 NR:ns ## KEGG: LCRIS_00214 # Name: not_defined # Def: beta-propeller domain of methanol dehydrogenase type # Organism: L.crispatus # Pathway: not_defined # 24 174 26 185 194 74 29.0 2e-12 MKSKCLIFFLLLFFPIVTAFSSNDLTTEQLIQRQNQFYEQKNIEVKIKVVNTRPAKVAPK EIYLLVKCSNKRNNIQLYVGKSWQKIITSNKKSALLTSQAELLKSTNKNQFSQGVKRLLR AVFTLIDQSQGITSKYDLAQFELDKMLKPRSLSLPVAIMFGLIFMSGTYLYRKFIFKR >gi|313656766|gb|GL545251.1| GENE 1156 1082274 - 1082756 562 160 aa, chain - ## HITS:1 COG:SPy1823 KEGG:ns NR:ns ## COG: SPy1823 COG2131 # Protein_GI_number: 15675651 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Streptococcus pyogenes M1 GAS # 4 155 3 145 153 187 57.0 8e-48 MANHRIPWEQYFMMQALVISQRSTCNRALVGSVLVKDKRIIGTGYNGSVTGQAHCDDVGH QMVDGHCVRTIHSEMNTLIQCAKNGVSTLNTEIYVTHFPCYNCTKALIQAGIKRVNYFFD YRDNPLAVDLLKKTGVEVNQIKLDSSYVQNLVEEIGQNEV >gi|313656766|gb|GL545251.1| GENE 1157 1082756 - 1083658 1059 300 aa, chain - ## HITS:1 COG:L0358 KEGG:ns NR:ns ## COG: L0358 COG0180 # Protein_GI_number: 15672048 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Lactococcus lactis # 2 297 43 341 341 405 69.0 1e-113 MIADTQALTDNARNPEKIRNSLIEVALDYLAVGIDPEKSTIFVQSQIPALFELTAYYLDL VTVARLERNPTVKTEIKQKNFNESIPAGFLTYPVSQAADITAFKATLIPVGDDQEPMMEQ TREIVRTFNRLYNTDILKEPKGYFPPKGQGRLPGLDGNAKMSKSLGNAIYLADDAKTLTK KVMSMYTDPNHIHVEDPGQVEGNTVFTYLDVFAKDQDKVVDLKAQYQKGGLGDVKIKRYL NEVLEEELAPIRERREKFAQDKDAVYEMLLEGSKKANEVANETLQEVRDAIGFNYFKGQR >gi|313656766|gb|GL545251.1| GENE 1158 1083694 - 1083876 106 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313472665|ref|ZP_07813154.1| ## NR: gi|313472665|ref|ZP_07813154.1| tryptophan--tRNA ligase [Lactobacillus jensenii 1153] tryptophan--tRNA ligase [Lactobacillus jensenii 1153] # 1 60 1 60 60 102 100.0 9e-21 MNISFVQEKIARYVKIKVIILKFRKFEFKEITMAKEVLLTGDRPTGRLHIGHYIGSLKIG >gi|313656766|gb|GL545251.1| GENE 1159 1084006 - 1084602 516 198 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00210 NR:ns ## KEGG: LCRIS_00210 # Name: not_defined # Def: abortive infection protein # Organism: L.crispatus # Pathway: not_defined # 2 198 24 220 220 167 50.0 3e-40 MVIGAKELCANSSKLHIWDLILFAVVTVMTFLLYVYRFKREQRYFEKVNKVSLLDNIKVT LWLSFLIFFLRGLVSYLQVNQYINSYTFQLTYAKHESVSMFWFLIFAQGLVLPFLQVFLA EGFLFNYLFRDNVGSVAIFGIVFSGLIFSLVNFQLNVPVFLFDMVFGLIFAWAYLYSQNI VMPLYLAILNGLLMVMLV >gi|313656766|gb|GL545251.1| GENE 1160 1084743 - 1085099 293 118 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01447 NR:ns ## KEGG: LCRIS_01447 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 4 115 7 121 122 87 40.0 1e-16 MTSDKQIYDFFKNYQDRGMKKWTGFFLSAHTAKISQSKKCENNRLKKALDLEKIKKVLLE ATTQGKIVQIQLKAVDLDGAPFPEIKGIIEGWIDNQVVINRQIINISEINCLEIVKEL >gi|313656766|gb|GL545251.1| GENE 1161 1085092 - 1086402 920 436 aa, chain - ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 3 431 6 426 426 333 41.0 5e-91 MYDYRYEPHRLIFMIDNKSFYASCECLRLGLNPMTTALAALSHQPDSDEQSSLIMAASPL AKKKYGLTNVMRARDLPPKSQREDLLLVEPHMNLYIEKSMEVLDIFRKYAAEEDIHTYSI DESMIDMTESWHLFGTDPYLVGRKIQKEIKEKLGLYTTCGIGENPLLAKLAMDIDAKKRW SMIAFWHYIDVPDTIWQIKNLEDVWGINKSTAQRLKKLGINDMNELAHCNPEKLKSEFGI IGEQLFAISWGVDRSIIRYKYKPKRKSFGNSQILMRDYLGQREIEIVIREIAEQVAARIR KHKLLTSCISLHIGFSKLKNNKRNGINASKKITATNDNIALTTELRSLFRKYWNGEAVRT ISISYSDLLPDIEQQLDLFSDPAKQIKRKNFDYVIDSLREKYGPTSLVKASSLLPGATAI RRANLVGGHNGGKIYD >gi|313656766|gb|GL545251.1| GENE 1162 1086714 - 1086950 226 78 aa, chain - ## HITS:1 COG:no KEGG:LSL_0121 NR:ns ## KEGG: LSL_0121 # Name: greA # Def: transcription elongation factor GreA # Organism: L.salivarius # Pathway: not_defined # 1 73 9 81 157 100 73.0 2e-20 MTPQGYKLIEEEIKNLKKSRPIKIKALQEARSLGDLSENSEYTEAKKELRHLESRLRYLD KQLKYAEIITPNDDKKLI >gi|313656766|gb|GL545251.1| GENE 1163 1086968 - 1087555 604 195 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855577|ref|ZP_04645879.1| ## NR: gi|238855577|ref|ZP_04645879.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative liporotein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] putative liporotein [Lactobacillus jensenii 208-1] # 1 195 1 195 195 184 100.0 2e-45 MYKKIITSVALILVLAGAVAGCSQKKSTTSSTKQSQIVEKHHKKAKKSKKRKSTRIDETE NQNSSTETSSQSNANETASSNANGQNTGSLNNSNNSNSTNTQGATNNSQTNTGRANNSNS TESIANAAVNDWLKRGGYPASFTDKDLVAYISSSSSETQISVAEKASGHIVANYVAKANG LYYYDIVNNTLIKVN >gi|313656766|gb|GL545251.1| GENE 1164 1087696 - 1089012 1624 438 aa, chain + ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 1 438 1 437 441 351 42.0 2e-96 MANELTLQELEDFSREFNADPTSQVVARAAKRSGVLEASYNDAVSHRLTHVFSTELDTDN VTNQLQSGRCWLFATLNVLRHHFGKEYKAKNFTFSQAYNFFWDKVERANNFYNYVLENAD KPLDDREVKAYFDFAGHDGGQWHMAISLVEKYGVVPTYAMPETANTNNTAALAEALAQKE KKDALVLRKLVQAGDLEAAQKARKKFLSEVYRMTAIAVGEPPKKFDLEYRDDDKKYHLEK NLTPVEFYNKYFKDVDLSDYVVLTNAPDHEYNKLFALPSEDNVQGKYPIKLLNVPMEFLT SAAIAQLKDGEAVWFGNDVGKQKENKTGFLATDLYKLDDLFGVDLTMTKKERLETGMGEV SHAMTLVGVDEDNGDVRQWKVENSWGEKVAKKGYYVMSQDWFEEYVYEVVVHKKYLTSEQ QKLAEGPAQQLPAWDSLA >gi|313656766|gb|GL545251.1| GENE 1165 1089049 - 1090740 2045 563 aa, chain - ## HITS:1 COG:lin0483 KEGG:ns NR:ns ## COG: lin0483 COG4716 # Protein_GI_number: 16799558 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Listeria innocua # 3 562 49 565 566 421 42.0 1e-117 MKKKAIMIGAGLANMAAAVYLIQEGKWSGSNITFYALDKHGSNDGSAANEASEEYWNQNH PMENTKGFIARGGRMLNYRTYVDLMDLLSRIPSVTESGMSAEEDTRDFDSKHRTYDKARL LEGGIGIVDGHKLGLNNMDRILLSRLVMMPDNQEEKLDNVTIAEYFKDDPHMFQTNFWYM WETTFAFRVQSSAQELRRYMHQMIYEFTQIEHLVGVNRTRYNQYESIMLPLIKYLQKQGC KFVMNRRVTDFEFKDTPMQDEITVTALKMENTEIGKEEKVEVDNQTAVFFTNGSITDSAT LGDFNTPAPENMDYGAASSLWKKACEHFYNLGSPDKFFNDRNDSEWVSFTLTTKDHTLLN EITRITTQVPGNALNSFISTSPITPLGQKDVNMSIVVHHQPHFTTQKHNETVIWGYFLYP RRKGEFIDKQYIKMTGKEMLQELIGQLSKVDPGPHNIKDLEDKILASVINCIPCYMPYAS ALFNNRAKSDRPEIIPKHSTNLAFTGEFVEQPYQMIFTEESAVRSGEVAAFHFAGVPMSK LVSTPRYDKDPKTLMKATKRMFS >gi|313656766|gb|GL545251.1| GENE 1166 1090940 - 1092193 1269 417 aa, chain - ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 3 416 4 417 441 369 44.0 1e-102 MHKLTMAEIAKFQKDYHEKAQNNVAKLAVVNNGLLNASYNHEGANKLNRTFSIEVPTDNV TNQKQSGRCWLFAALNTLRHKFAQTNKAKNFTLSQSYLFFWDRIERANIFFENIIETATQ PLDDRVVQSYMAAPDTDGGQWAMAVSLIRKYGLVPSYAQAESFTANNTSAFNQALNMKLR QDALILRNLVKNNKLDEAEEKRQEFLSAVYQMAVIAFGEPVQKFDLEFRDDEGKYHMDAN LSPLDFFHNYFEDDLDDYVVLFNAPDHEFDKLYSLPFEDNVVGGSPVKFLNTKIDNLKAA AIAQLKAGETIWFGCDVGKASDRQNGILSRDLYLTDLVLGIKTNLSKKERLLTRASGSTH AMTLVGVDLVNDNPRQWKVENSWGEKAGKNGYFVMDDAWFDEYLFKVVVKNNIFQKN >gi|313656766|gb|GL545251.1| GENE 1167 1092705 - 1094855 1192 716 aa, chain + ## HITS:1 COG:SPy2211 KEGG:ns NR:ns ## COG: SPy2211 COG4485 # Protein_GI_number: 15675943 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 3 626 47 679 858 159 27.0 2e-38 MTQYTSFFQYFRHVILGNHSDFAYSFSNGLGGSMIGNWAYYLLSPLNFIVLLFPASKITI ALYTIIWIKVMLAAGSFCYAIQKLTKLTSTLAITVSISYALSSYTIFYMGNLMWLDAIIF LPLLILLTHKFAVGRQKPIYSIILAITILANYYTSYMIGLFLIAYFIYISFLKFKTWKRF LKNLAYFVLYSISGVLLTLFIELPTLLNLKETKLSTHYAITNYSIPKLLFNLPSNMLFGA SNTQLPLIYTGSLVLLLTIAYFFNIHIQIREKLATLALLLFTCSGLLSNKLYVLWHAGQP PQSYPFRFAFILNFLFILVACYQLAKQQLTKRQVELTTIILGILFIISAYIRHKNSINLA WIISSVCWILIATVTYWFYTKKKINSIWLLIITILEISLNAIFSWHSVIPSSYENYTVET QNLINKLPATAKNSRLEKNFLINQNRGESYTFNYRGATVFSSNNDIKISNLYDDLGLQGL GYFYFYLTGTQLTDALFGIKTNIQTNRPNDTIPKFRNYGLREDLSQNPIWYKDSHNIAYK SETFPLAFAGYSYNNFIPISNNPLENQSKILNKLTNSNNNYFSKAIQGRISYQNAKISSN QQNISFKQIDTSKSTTLTFNYIATPNTSAYIILDKQIMTAEDGDSRASKLTINGKSFRSM PFSTQPIGIFVPASGKVTLTMTFKASTHNLTIIRPSLYLLNKKNCGKLLKKLKIIK >gi|313656766|gb|GL545251.1| GENE 1168 1094852 - 1095145 166 97 aa, chain + ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 26 97 803 874 883 57 43.0 7e-09 MNLTNWKGNSISGTVTIHKGQSLVTTIPYTNGWHAIVDGKSTPISKTLNSFIALNLPSGK HTINLYFEIPGLKLGIFLTILGALLLLIESIFIKKKQ >gi|313656766|gb|GL545251.1| GENE 1169 1095250 - 1096512 622 420 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 3 419 6 416 418 244 36 1e-62 MAKFDILEDLKWRGAINQQTDEEGLKKYLAEHDDLALYCGTDPTGDSLHIGHLIPFMILK RFQLAGYHPVIIIGGGTGSIGDPSGRKTERVLQSDEQVHHNEVALTNQMKKLFGTENFQI VNNRDWLGKMSLLEFLRDYGKLFQINNMLAKDVVASRLENGISFTEFTYQILQGIDFYIL NRDYGVQMQIGGSDQWGNITSGIDLIHRLEGNDRPAFGLTIPLMLKADGTKFGKSAGGAV WLDPEKTSPYEFYQFWINQDDRDVVKYLKYFTFLSHEEIEALAEKVKTEPWKREAQKTLA AEVTKFVHGEAGLKEAQMITDALFSGNVKDLSVKQIEQALKNAPSAESTNEKQNLVEFLV DTKIESSKRQAREDIQNGAIYVNGDKIQDLEFEVDPSASFEGKYVIIRKGKRKYTLVTIK >gi|313656766|gb|GL545251.1| GENE 1170 1096873 - 1097490 451 205 aa, chain - ## HITS:1 COG:PA0581 KEGG:ns NR:ns ## COG: PA0581 COG0344 # Protein_GI_number: 15595778 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pseudomonas aeruginosa # 8 116 7 115 189 80 39.0 2e-15 MIHFSSFIIGYILGNFLFALIVGKYFLHADPTQNGSGNPGTANMGAVFGKKWGILTLIGD AVKSILALTITWLLFKSQLAMTYCGLGLMLGHCYPITNRFKGGKGVAVVGITILAVNFKI ALIILLIALVLTIVMKNLTIPPLFFTYCFGVVNLLLGKVDRGLIFLLIGIIMTIRFWKDI IDFVQGNGKKVDILFSIKKKLGIKI >gi|313656766|gb|GL545251.1| GENE 1171 1097493 - 1098635 1316 380 aa, chain - ## HITS:1 COG:SPy1733 KEGG:ns NR:ns ## COG: SPy1733 COG1316 # Protein_GI_number: 15675582 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 20 374 2 373 424 188 35.0 2e-47 MQNNYPGNSRVALYESNKRKRNKKIRLIIGIIMILLLGIGSYFSYIFFRTKGAIDKTYDP KTAVATNSSTFNGKKSFAVLLMGTDTGAFNRTDKMGNTDTMIVAVVNPTKKRYTLMSIPR DTMAQMVGAKSLTAEKINAAYSIGGAKMAMNTVSKLINVPIKYYAVINMGGLRKMVNGVG GVTVTPPLSFSYGGYSFKKGKKTKLNGAQALAYARMRYDDPTGDYGRQLRQRQVIMSLVE NASSISTLANLESILNSVSENIKTNLTFNNLMAIFQNYKSSTATSKSDYLHGLSVTIDGA SYQVMSDSELQRVSDYIRSELGLEKEKISNFETYENKLNEQNGFSFNSTETQEYTVYDYG SYTSSDTNSDNDQDDDTGDY >gi|313656766|gb|GL545251.1| GENE 1172 1098726 - 1099904 1093 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 1173 1100165 - 1100857 1090 230 aa, chain - ## HITS:1 COG:PM1506 KEGG:ns NR:ns ## COG: PM1506 COG0588 # Protein_GI_number: 15603371 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Pasteurella multocida # 3 228 2 227 227 306 65.0 2e-83 MSKLVLIRHGQSEWNLSNQFTGWVDVNLSDKGVEEAKKAGRLIKEHGLKFDQAYTSVLKR AIKTLHFALEESDQLWIPETKTWRLNERHYGALQGLNKKATAEKYGDEQVHIWRRSYDVL PPAIDDDNEYSQAHDRRYSNLDPNIVPKAENLHVCLDRVMPFWEDHIAPDLLAGKNVIIA AHGNSLRALTKYIERISDEDIMDVEMKTGEPVVYTFDDKLNVTDKVKLDD >gi|313656766|gb|GL545251.1| GENE 1174 1100986 - 1102896 1880 636 aa, chain - ## HITS:1 COG:L37906_2 KEGG:ns NR:ns ## COG: L37906_2 COG1263 # Protein_GI_number: 15672409 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 268 632 3 398 406 253 40.0 7e-67 MSKKINILAPAKGQVLALNKVNDEVFSSGIMGEGFGLEPLEGTIYAPVSGIITMVADSKH AIGIKTEDELEVLVHMGIDTVGLNGEGFEVFVKQGDKVAAGQKIATMSLETIKLHNLATT VMVIVTNSTAKLEGLDLEEVETNEKASVAAAYVKSAVVKDGKLDYDALADVIIENVGGED NIKSLIHCITRLRFGLKDEQKANDEVLQDTDGVIDVIHASGQYQVVIGNEVTAVYDAVMK KLPNLSDNDEAEEETSESKGISGAFNQLIGIITGSMSPVVGVIAASGIIKGILALLTLPQ LGNLLNVKSEMYITISAMADAAFFFLPILVGFSAAKRLGGNPITVAVIGGFLTYPQMIAW GKAFKDIFVIGNVHFQFLNYTYSIFPMILAAWFAKKLEDYLKKILPSFLQMIFIPMFTIL VVSSITLLITGPVIQGLANGIADLINVVVHSSGWIGGLIIGGFYQLLVIFGLHWGVVPLV AQQIAGSGESALNAIISVTMVSQGAAVLAAAIKTRKNDLKSLGIAAAISAFCGVTEPAIY GINLRYRKVFVSGLIGSAVGGFITGLMHGSMYGFTGSLIGFSSFFNPKHATDLTSFYAFL FSSIAAILVSFILTWVWGYNDSMAQGKKVEKRKLNK >gi|313656766|gb|GL545251.1| GENE 1175 1103149 - 1103709 440 186 aa, chain + ## HITS:1 COG:lin1221 KEGG:ns NR:ns ## COG: lin1221 COG2188 # Protein_GI_number: 16800290 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 3 184 55 237 237 149 46.0 3e-36 MQELGLIQKIRGKGSLVLDLGRYSFPISGLTSFKELNRSLGMNAETILLENSEKSFPSTF MGKRIAPEDAIFLKRLRKIDGEPAVVDVDYLIKKLVPSISNQVAQDSIYDYLENKLSLKI SYATKVITVEKADESIAKTLNLAQNSNVVIVRSMVYLDDTSLLQLTISYHRPDKFEFTDF ARRQKI >gi|313656766|gb|GL545251.1| GENE 1176 1103719 - 1105374 1316 551 aa, chain + ## HITS:1 COG:SP1883 KEGG:ns NR:ns ## COG: SP1883 COG0366 # Protein_GI_number: 15901711 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 548 1 537 541 612 56.0 1e-175 MTKLGKKVIYQIYPKSFFDSNNDGVGDIPGIIEKIDYLAKLNIDMIWFNPFYVSPQKDNG YDIANYREIDPHFGTMADFEKLVAELKKHNIGIMMDMVFNHCSTEHEWFKKALAGDKYYQ DYFYIRDGKNGGFPNNWRSKFGGPAWEKFGDTGKYYLHLYDPSQADLDWHNPNVRQECFD IVNFWRQKGVTGFRFDVLNVIGKDRVLVDSKDPAQEKSLYTDTPVVHTYIKELNQNTFGQ DPDCITVGEMSSTTLKNSIGYTKPDNHELSMVFSFHHLKVDYLNGEKWSITHFDFKKLKD LLLTWQEELDKADGWQALFWNNHDQPWALNRFGNTGKYRIQSAQMLATTIHLMRGTPYIY MGEELGMKDPAYHSIDQYVDVEAKNAYRELLKKYPEPKAFEIVHSKARDNSRGPMHWDNS EYAGFSKIKPWLMPTDQEEINVRKELNDGQIFNYYQELIKLRKNERLVYEGHIHGLLKDN SHVLAYERFLDDTKEKILVLNNFSDRKVKLNLPTEWLNKDGNTIISNYNRKLTHLNSELT LEPYESLAFKC >gi|313656766|gb|GL545251.1| GENE 1177 1105368 - 1105556 87 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKIYIKKLLALNELTVFLFGQSWNSTFTIGLPKHQHFPCLAIKSRCPLINIRISRSLST RR >gi|313656766|gb|GL545251.1| GENE 1178 1105569 - 1108112 2593 847 aa, chain - ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 3 847 6 896 896 672 42.0 0 MRKRILWKDAWQAITDSLGRFIAILMLMIVAVFTFIGLKMTGPDMRSSAINLFKNNNLAD ITVLSNHGLNQKDKQKIEKQSDIKLVEYSYLMDSTVNNSRRSLRIYSESKKISKAMLTKG NLPKANNEIVISYLLQDKYKLGQKLTLDNHSSLKHKKFTVVGYVRSSEYLDKLDTGQTNV GTGQLSGFAFIKKSAFKSGTTTGIARITYKKTAKMNPYSTKYSNYINDKEKDLKKELDKN ISAKENKTKNKIAEINDSLTKLNVIVAVKPEYQSQIKQLESAKAKLEHLNKPSYTVNTRD EFPGYENYRSNAERIDVLSNIFPVFLFAISALVSLTTMTRFVEEERINIGTMKAIGYSNF DVAKKFIVYSMLSSTLGVILGAWGGFRVLPGIIFEAYAANSTMTGFRSQFSLVWLILGLV VAWACTTLAALYALKKDLKDRPAQLLLPKPPKKGSKIFLERITPFWSRLSFNHKVTFRNL FRYKTRMLMTIFGVAGCTGLLVMAFGIRDSLSGISKNQYTNIIKYDMIAVKNSNPSSKQN TDLLDELDSNSVKRYKQIHFTTLNRNLGEDKTKQTINVIVPKANTDLSKYINLMSSSTGK KLKLTNNGVIISEKLAQLTNAKVGHYIKLKDTNDKWKKFKVSGICEMYMGHYMVMNKQAY KHYFDKEYKTNGYLITTKSGKLQTVSEKLMATGAIKGINQNVNNKKTIDNLINSLNKVIL ILIAISTILALVVIYNLTNINVDERMRELSTIKVLGFFDKEVTMYIYRETIILSILGILA GYLVGIWLHSFIITTLPPVNAMFDPNMYISNFIYSALIPAVLTTVLAFIMHKKIKDVDML DALKSVE >gi|313656766|gb|GL545251.1| GENE 1179 1108130 - 1108831 308 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 216 1 217 245 123 34 3e-26 MPIIDVKNISKEYKNGNTTIFANKAITFSIEKGQLVVILGPSGAGKSTLLNILGGMDTST SGDVIVNGNNIANYSRKELTAYRREDVGFVFQFYNLVPNLTAKENVELAAEIVPNAMEAS EALNAVGLGNRMNNFPAQLSGGEQQRVAIARAIAKNPAILLCDEPTGALDYQTGKHVLKI LQEMSIKKGSTVVIVTHNATIAPIANQVIHVHDGQVKKIEKNEHPTAISEIEW >gi|313656766|gb|GL545251.1| GENE 1180 1108938 - 1109396 463 152 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 135 1 135 152 115 44.0 2e-26 MTIWLQILINIVFSIIGSIGFALTINVPRRALFLTGISGACGWMTYWVLIRLHSGRMIAN LVGAFVIGMLGLYFARIKKCPVSVFNIPALVPLVPGAPAYMAVRALVQGKYDLAEDLMLR VGIITVAIALGFLLSTLQSEFIYRLKMHYKNK >gi|313656766|gb|GL545251.1| GENE 1181 1109398 - 1110165 629 255 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 15 253 13 249 250 183 42.0 2e-46 MFEDKERLKEIQRICLLAGHLMIEGGSEMSRVEDTMLRIARNAGVSDPQVFATPTGVFLT LDSGQLSQIEQVRERNINLELVDRVNNLSRQFANKEINLQELDEKLHDVATNTAAFPLWL QLIGAASLSSTLMILFFDSYDWLDFPAAAIVGCLGFLVYYFIQKYTRIRFLSELIAAMFM ALLTYLIRLLVPECSIDKVLVGALMTLVPGLALTNALRDLFAGDLMSGIGRFVEAVMTAL ALGGGVGIIMRFLGA >gi|313656766|gb|GL545251.1| GENE 1182 1110177 - 1111718 1631 513 aa, chain - ## HITS:1 COG:CAC3339 KEGG:ns NR:ns ## COG: CAC3339 COG0488 # Protein_GI_number: 15896582 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 499 1 501 518 424 44.0 1e-118 MSLLTVKGLSQSFIDKTLYEDANFVLNKEDHMGVTGQNGVGKSTLIKILTGEIVPDDGQV KWQKNIKVGYLDQYAKLTPGMTLKAFLKTAFADLFAQEEKLNSLYVEYSEKGDQALLDKA GKIQTHLEEVGFYDIDTAIDQVASGLGLLELGYGKDVSEMSGGQRSKLILAKLLLEKPQV LVLDEPTNYLDVNHIDWLVTYLNDFEGAFIVVSHDYDFLGRITNCIIDIDFGTITRYTGD LKHAMRQKAQDRETYLKAYQNQQRKIAKTEAYIRKNKAGTRAKSARSRQKQLDRMEKLTP PQNNKRAKFDFPYVATASNLLLQTQDLVIGYDRALVKHAFNFSVGGNEKVAVTGFNGIGK TTLLKTLLGKLKPVYGNFELSATAKLAYFKQDLAWPNKNMTPLQYLAECYEKIKPKELRQ ALARMGLTAQQAMSPLGELSGGEQEKVKLAKMQFEPANILFLDEPTNHLDNETKDALRKA IVNFPGAVIIVSHERDFFRGNWVDKTIDIEKMN >gi|313656766|gb|GL545251.1| GENE 1183 1111777 - 1112151 204 124 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01784 NR:ns ## KEGG: LCRIS_01784 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 4 124 5 125 125 140 61.0 1e-32 MLYEKSNIFPIIYAIISAILTFIAVFFILFNTFHINLSFTIFGAALIAVISYVYSYFRAH ASAEIKRIVYQYGLNDAELAKMTGLKKSDFPIYQDKLQLILPKRMWPRVLHVLQEYEQKQ QSKE >gi|313656766|gb|GL545251.1| GENE 1184 1112472 - 1112954 778 160 aa, chain + ## HITS:1 COG:no KEGG:LC705_00278 NR:ns ## KEGG: LC705_00278 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 73 160 142 229 229 144 86.0 1e-33 MRAKLIKDRQKAAIAELTKNAKAEQAKMDAQAKAEAEAKAQEEQKQAQQAVTQAPTTTSA TTQTANQNVSGVNKGTFKLSFYDPAALGSNMGYDGVAANLSVFPKGTKLKITLSDGTVWY RVVNDTGGFAAANPNQLDVAMPNSQVPAAGILYATVEVIG >gi|313656766|gb|GL545251.1| GENE 1185 1113024 - 1114466 1286 480 aa, chain - ## HITS:1 COG:SA0868_1 KEGG:ns NR:ns ## COG: SA0868_1 COG0475 # Protein_GI_number: 15926598 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 265 130 396 399 196 45.0 8e-50 MLLASIIFMTVALGVVIATLKEKEILSKSIGQSILLTAVLGEVVPLLGLTIYASIHGGDA EKLWLIILLFVAAIVLLIRFKRPYLWFNKITKQTTQIDIRLAFFLIFVLVSIAEKVGAEN ILGAFLAGMVMKLLEPSEATKDKLTSIGYGFFIPFFFIMTGAKLNLKSLFTNQSALLLLP ILVLAFFVSKVPAVLTYLKYFTKRNALAGGLLTATTITIVLPTLQVARKLNAISKTQSDA FTLAAIITCIAGPIIFNSLFKLAPEDKIKEKVLIYGANVFSVAVAQELHDKWYSVEMITD DQEAYNTYKSRVKSLKYCNNVLAINEFNYDIVASSGSDDERNYEFAKKAKQAGVSRVIVR QKQPEANRIAELTQLDIEVFNGYSARTSAMRALIESPAFYEILTDSDNILYDVKIRNHRY AGHQLMDLSFIDKITVSRIKRDGEWLAPHGTTVLEVGDEIVYTGKVEDADMIRELLTKEN >gi|313656766|gb|GL545251.1| GENE 1186 1114562 - 1114810 388 82 aa, chain - ## HITS:1 COG:BS_yjbQ_1 KEGG:ns NR:ns ## COG: BS_yjbQ_1 COG0475 # Protein_GI_number: 16078229 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 1 79 9 86 400 58 45.0 2e-09 MLLVILMALVIPIWMAKFNLHNIPTAVAEIIVGIVLGVSGFNWVDTSNSQLSFLSNLGVI ILIFLSGMEIEFDLFKKNKIHK >gi|313656766|gb|GL545251.1| GENE 1187 1114890 - 1117043 1719 717 aa, chain - ## HITS:1 COG:lin1064_1 KEGG:ns NR:ns ## COG: lin1064_1 COG1705 # Protein_GI_number: 16800133 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 37 195 46 201 201 129 49.0 2e-29 MKTKKITGVATAALLASVAVPVTNNLANIQTSYTAKAVTGQQQAFLNTAIPNAEAASARY GTYTSVMLAQSILESGWGASLLATQANNLFGMKGSYNGQTYYTNTSEWASGTGYYNINAG FRKYPSWAASFEDNGYKLRTGTTDNPSRYRMAWIENAANYQVATQGLKDGGYATSPTYPQ SLNRVISSYGLNQYDPSVDTTTKTMRVLSNGTVYSGPADSSVVSATGNITAGQVVTVDKT VTYKNGLSYMHISNGWINGSLLTGSSTQATTTEKAGTTTDAGNAAIKVVYTSAIAEWKNP GSGVVGYLQKGTTQTVVGKIQVNGAWWYKLSSGNWVPGEYVYVTGASRIPTIDNNVVNQN TKVKIKYISGYSIAVWSNPAIGTTGQYLKDGTEVQTIGYTTANGKKWYKLANNTWIPAEY TEVVSSSTVVTNITNESNTVAINYPHYSIAVWSEPGRNSTGKYLSDGTKVQTVGYTTVNG KKWYKLADNTWIPAEYTKVVSSSTVVTNITNESNTVAINYPHYSIAVWGEPGKNSTGKYL SDGTKVQTVGYTTVNGKKWYKLADNTWIPAEYTKAVSSTDTTSGNNTVTVNYPGYSIVVW SEPGRNSTGKYISDGTSVKYYATANYNGQTWYKIGENQWVPGQYVKVNASNNSGSVTVKY ISGYGIAIWSNPGRNSTGKYLENGTTVKYFETQNYNGQTWYKIGENQWVPAQYVSVN >gi|313656766|gb|GL545251.1| GENE 1188 1117291 - 1117500 142 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKINLFISIVAVIIVAAGGFLFIQIKAKALIQVLVLAPPTLKQWQVGKKMSKMKNTTLQ LVTLIKPTI >gi|313656766|gb|GL545251.1| GENE 1189 1117422 - 1118177 789 251 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0194 NR:ns ## KEGG: LBUL_0194 # Name: not_defined # Def: lipoprotein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 248 45 312 315 134 41.0 3e-30 MASGKENVKNEKYDAAASDFNKAYDLKHTAKAKAYANQAENMSDAITYGKRAKYTASLNS INKVINEENGYDVLISKAQTLKKVIKTAYNNYKTTIQPLLEAAQEAERKQNFQLAINNYE QVLELPYINDRYYQAIKSNTEDKLNKDKALLKKQSSSSSSSSSMQSSSSSSSNSNSKMNG EFSGNRTVDGKNVSSATQSEIRNRLNSLGYNASPWSPQDIINLYRYAFAQGHKTPDSITK SDVENYLKPSN >gi|313656766|gb|GL545251.1| GENE 1190 1118267 - 1118461 162 64 aa, chain + ## HITS:1 COG:no KEGG:FI9785_219 NR:ns ## KEGG: FI9785_219 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 7 59 12 64 139 63 64.0 4e-09 MTEELNKNNDEFEVVVPEANREEMPKAEFKEQPAYLVNFANFYIAKYNQNDLEIMGSFDK KVIF >gi|313656766|gb|GL545251.1| GENE 1191 1118476 - 1118670 82 64 aa, chain + ## HITS:1 COG:no KEGG:lhv_0177 NR:ns ## KEGG: lhv_0177 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 64 81 144 144 73 56.0 2e-12 MLNNINFSRKELVKHVLNVHDYNFKSLLDEVVAKSNIDPESFATFEDWDKWYEAERNQIP GSLS >gi|313656766|gb|GL545251.1| GENE 1192 1118774 - 1120816 2170 680 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 7 664 10 661 666 675 53.0 0 MKLKKRDRLTAAGLLISIGIVYGDIGTSPLYVMKSIVAGNGGMTNISRELILGAISLIFW TVTLLTTVKYVAIALKATNHGEGGIFALYALVRKRAKWLVIPALVGGAALLADGALTPAV TVTTAIEGLKGMNFGGNVLVSTQGMVILITVCILLLLFAIQRMGTSLIGKAFGPIMLIWF TFLGVIGLINMANDWSILQALNPIYAVKILFSPVNKVGIFILGSIFLATTGAEALYSDVG HVGKANIKGSWPYVFICLVLNYLGQGVWILQNPGFKTSGDFNPFYQIVPENIRVYAIILA TMAAIIASQALITGSFTLVSEASQLKFLPRMNIVYPTTEQGQIYIPSVNKMLGATTLAVV FFFQTSEHMESAYGLAITATMLMTTILLSEYLAKKGVHFIWRILFLAFFAAIEMMFLISS LVKFVHGGYVTVIIAGLIGIVMYIWYFGNKVRDKRESRNSYVRLDEYTSMLTNLSHDENY PTYATNLVYMAKVKYNKFIKREVLYSILDKRPKRAQAYWFVTVNVTNEPFTAEYAVNTYG TKNVINIQLYLGFKKQTSVNVYLRQIIHDLIADGTIESQPQEYTTTPGRDVGDFSFVIVQ DVVSPQTELTTYEKWIIQARVGLQNSSSNPASWFGLDYADTVVERVPLILGKPTPSYIKR VEPINYANLKKKLKGDGTRA >gi|313656766|gb|GL545251.1| GENE 1193 1120860 - 1122371 1817 503 aa, chain - ## HITS:1 COG:L49741 KEGG:ns NR:ns ## COG: L49741 COG3590 # Protein_GI_number: 15673785 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Lactococcus lactis # 13 503 138 627 627 408 45.0 1e-113 MKNTKVNILNNVGPSTILPDTVTYQTEAKDQLLPIYQKQTINLLEMAGLSSAEAEKYVEK ALAYDARIAKVVKSSEEWADYPASYNPMSLADFAAKFKSYDIVSHIEGLVGMKPDRVIEA DPGYLDHAEELFNESVFEEIKGWMLARFINNAAASLSADFRQAAFPFSQALYGQAELSSG EKQAYRLANSQFSEVVGIYYGQTYFGKDAKADVIDMIHKMIKVYEKRLSENSWLSKATRD KAIVKLQALELKIGYPEKSEEVYNRFKVDESASLYENLAENSKISQAYEYEQLPKPVDRS VWAMPGNLVNACYDPQRNDLTFPAAILQKPFYDLNQTRSENYGGIGVVIAHEISHAFDNN GSQFDEFGNMVNWWQDEDYAEFKKRIQAEIKLFDGIQYGPVKLNGKQIVSENIADQGGLT AAVHAAKGEGDASMQELFENFARVWAIKQKEEAIKSITAIDVHAPGPLRANVQSQCQEEF YKAFDVKPGDGMYLEPEKRVEIW >gi|313656766|gb|GL545251.1| GENE 1194 1122368 - 1122802 652 144 aa, chain - ## HITS:1 COG:SP1647 KEGG:ns NR:ns ## COG: SP1647 COG3590 # Protein_GI_number: 15901483 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Streptococcus pneumoniae TIGR4 # 21 134 3 115 630 77 35.0 7e-15 MNKQAVRGGAGDITSPKSGVRPQDNLYLAVNSDWLKTIEIPADRSSMGSFGKIDENVEKQ LMQDFADFADGKKAIPNVPNLDKAVALYKVARDFDKRNSEGAEPIKARLKQLLDLKDFAD LKEKALELDKEGLPVPLFLVLNQT >gi|313656766|gb|GL545251.1| GENE 1195 1122905 - 1124119 1094 404 aa, chain - ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 18 376 10 365 393 197 33.0 3e-50 MKTAHGATQVKEVNIHSLLLGELITWLGSSFIWPLTSVYLNKELHVSLAMIGVVLFFNCM ANMFGSMIAGRLYDRINPYPLVVAGLFLDAVVLFLLALFPGWPEYWLWLTLAGFFAGWDG ALINSMATSIKKIPSKKVFNLIYFAQNIGVVTGTLAVGYLYDFSVIFLFVLAAILYLLAT INAAINYRPIIAYHKELLKNKVKKEKKKVKLPKANLLMNYGLFITLGITWLMYMNWESNL SVYIVSFKIPFHMYSLLWTVNALIIVIIQAVLARFEHIFKTTFQQVVFGILMFSLSFVTL IFARDFGHFLLSMVILTFGEATAFPAIPSYVNDLTPIEVKGEYQGLTIVASSAGRAIGPL IGGLIIDQFSYIPFFIFAAIVIFLCLAILVPMHTHVKSKIKLFK >gi|313656766|gb|GL545251.1| GENE 1196 1124210 - 1125502 1475 430 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 43 383 19 367 419 160 31.0 5e-39 MKVLKKIAALVIMAITMLTVAACSNNKKNTTSSVNIPKNITKKTTITFWNAMVGPLQTNL QELTKEFEKQNPNIKVKLEYQGSYEDIKSKVQNTLQSPNNLPTIAQSYAGYLYTAAQGGY LQDMTPYINDTNVGWGSVSKSNINKTLLEGAQIKGTQYGIPFNKSVEVLYYNKTLLDKYG ISVPKTMSELKTAAKKIYDKTNHKVVGAGFDNLSAYYTDGMKEEGYNFNSKINFTGTASK NVIKYYADGIKRGYFMIAGSQKYLSVPFANEQVAMYVSASAGEAYVKKGLNGKFEYGVAN RPSKYNMARGSDIYMFKHASSMQKAAAFKYIKFLTSKSSQLKWANATGYIPVNNETVNSA AYKNSTSIKSPAILEQAIKRLYNFPVTKNSETTFNDVSSILSGILSQTKTKNVDSLIKTG KAKFDSDWKQ >gi|313656766|gb|GL545251.1| GENE 1197 1125834 - 1126241 297 135 aa, chain - ## HITS:1 COG:CC1859 KEGG:ns NR:ns ## COG: CC1859 COG2151 # Protein_GI_number: 16126102 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Caulobacter vibrioides # 7 105 20 118 118 102 49.0 2e-22 MEEKQLKLVDEVIQKLQTVIDPELYVDIVNLGLIYGIDLNDNNDCIVTMTLTVMGCPLSG VLDNAIKEAVLSIPEIKSCEIKLVWSPAWSVERMSDAAKTQLNVWSKDLSSYDSSNKKID FSTPVKNILIDTMIF >gi|313656766|gb|GL545251.1| GENE 1198 1126250 - 1126966 805 238 aa, chain - ## HITS:1 COG:lin0306 KEGG:ns NR:ns ## COG: lin0306 COG0602 # Protein_GI_number: 16799383 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Listeria innocua # 55 234 3 182 183 265 67.0 4e-71 MPSKDHNAQEGPDIRHNYIKVNVGGDTIFVDSNQYLPNIQKDRAARKLRKHRPKDPKPKE WLASEHSLQKIADYKPFNFVDGEGVRCSLYVSGCLFDCPGCYNLVAQNFNYGRPYTQELE DRIIRDMSEDYVQGLTLLGGEPFLNTQVCLKIVNRVRKEFGHTKDIWSWSGYTWDELMQE SEDKLELLSKIDILVDGRFEEDLKDLTLQFRGSSNQRIIDVPASFKAGKVVIWKNLVH >gi|313656766|gb|GL545251.1| GENE 1199 1126956 - 1129166 2559 736 aa, chain - ## HITS:1 COG:L70400 KEGG:ns NR:ns ## COG: L70400 COG1328 # Protein_GI_number: 15672255 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Lactococcus lactis # 21 724 17 727 747 921 60.0 0 MLKETPSKKMIVEAMKKPQYLVKRDSTKTNFETYKLDLVIHNLKLEDHEVEILKAIFSDL AMKYTVSAAEVAESFVDSLTKLGFVDEAKAYIEYRKKDDADWKKQIDTKARLKRMIEGDP SIVNENANKDSEIFSTQRDLTAGTVGKTVGLTMMPEHIAKAHLRGDIHWHDLDYTPLSPM TNCCLIDFKEMLTNGFKVGNAFMTSPNSIGVATSQVAQIITQVASSQYGGCSFDRADEVL APFAQKNYDHHLEEAKEFIDDEEKAKAFAKKRTQKDIYDAMQSLEYEINTMFSSQGQTPF TTLGFGLGTNWIEKEIQKDILKIRLAGLGKDKRTAIFPKLVFTLKKGLNLNPGDPNYDVK EIALECATYRMYPDVVSYDTIKRLTGSFKAPMGCRSFLQGWKDKNGKEVNSGRMNLGVIT LNLPRIAMESRGDKDLFWKIFEDKVQLVHDAMNIKAARCREAKPENAPVLYENGAFGKRL KPDEDVNQLFENGRCTVSFGYIGLYEVGTVFYGPNWEHNKEAHDFTVEIVKRMHDWCAYW EKTEKYHYHYSVYSTPSESLTDRFCVLDTEKFGKVKDITDKEYYTNSFHYDVRKHPTPFE KLEFEKDYPPYAAGGFIHYCEYPNLKQNPKALEAVWDFGYDKVGYLGTNTPIDRCFKCGF AGEFKATAKGFECPVCGNHDPETCDCVKRTCGYLGNPLKRPMVHGRHEEIAHRAKHMSLG MVRDQAQEEEKIQDAK >gi|313656766|gb|GL545251.1| GENE 1200 1129385 - 1131334 2243 649 aa, chain - ## HITS:1 COG:L0095 KEGG:ns NR:ns ## COG: L0095 COG0367 # Protein_GI_number: 15674210 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 627 1 618 625 670 52.0 0 MCGIAAFYNPEINDKQAAIGKMMEAIKHRGPSSDGMYTNDVMALGFRRLSIIDLRGGTQP IFNEDKSKAIIFNGEIYNYKPIREDLIKAGHTFTTKADTEVLLHGYEEWGMAGLLKKVRG MFAFIIWDDEEKAMYGARDFFGIKPMYYQNKDGKLLVGSELKSFLAYPDFKKELNVEAVK PYLMNQYNDLKETFFKGVYRFPAGHYFKFKDGQMDIKQYWDAEYKENNLSFEETLDKINE DLKETVELYHNADVPVGAFLSEGVDSSFVTSLLNPDDVFSISFDDSTYDEASKAKALADI KGWHFFADKVDADEAMRDFPEMQYHMDEPDANPSIIPLWYLSKLARKHVTVALSGEGADE LFAGYVNYGMHTHNNVIKVFTSGLKKLPKGVKFSLAKGIKKMPNFPGKVHMYTNLAKPSE FYVGQSVIYDMDHPTIFSSDDANSMLQPTYRNELTTNGLYQEDFKKVKDLDNVKQMQYID LHHFMLNDILQKADKISMAHSLELRVPYLDKKIAELANSIPTKYLVNKHDTKYALRKASE RVLPEEWAKRPKLGFPTPIKQWLKEERFYKQVRQLFCEDFVNEIFEQEKIIDLLDKNFKG DGSHRRQIWAIYTFLVWYKLYFIDYEETVKKYQHVQPEVAALIEQGKLV >gi|313656766|gb|GL545251.1| GENE 1201 1131439 - 1132119 637 226 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0182 NR:ns ## KEGG: LBUL_0182 # Name: not_defined # Def: 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 226 240 466 466 365 76.0 1e-100 MWPIMYAQKELKYISRYHGVAYFDKDDLRVIFVNTSDVPYILDEQGKKKYDTKLTLAIRE DQVEELIEILSNSSGKKIILLSHGNPINRKGGNALKYNGRSLHELLVAFNQREKGRMHSH NVPPEFTLSNDFDFTNVENARVIAYFCGHRHVEDQFRINGIQYILFNCSALMGPGHALTT KYNKNWNRQIDDITEFAGYVVNVDLVKSQIQVFGYGAASFKRVFSI >gi|313656766|gb|GL545251.1| GENE 1202 1132368 - 1132814 342 148 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0182 NR:ns ## KEGG: LBUL_0182 # Name: not_defined # Def: 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 25 143 32 150 466 152 61.0 4e-36 MLDFFAKKLAQVLNNHKQENNNDTDPMQGFLKVGEYSVGAQENTPDGGNYTLTVYKDDHG ILHQALSPEESDKLAATYVRRFDSRLGRFRAFQNRKTGIRYNVTDYLDNFLEQIKPQIRS GNNSINIGVLTDTHYKDTDSVDFMVIMA >gi|313656766|gb|GL545251.1| GENE 1203 1132867 - 1133352 610 161 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_00715 NR:ns ## KEGG: LAC30SC_00715 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 160 1 160 161 181 63.0 7e-45 MESLNTIKLADELTIKQDDILADTAKLNADAIYQLIDELKVLKHPIQEYFEMSQDEYYSS ESDHQLTLLDMNNKLVDLHDRILTNHVDGYVDKDEINLTYNHENPYEDGMYDKETDFHVL AYSLKVISAVMAVAPQKLTEIISKDAVLSLGLAVYALKHNA >gi|313656766|gb|GL545251.1| GENE 1204 1133433 - 1134245 801 270 aa, chain - ## HITS:1 COG:BH0442 KEGG:ns NR:ns ## COG: BH0442 COG3639 # Protein_GI_number: 15613005 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Bacillus halodurans # 16 270 15 267 267 218 45.0 7e-57 MDTTFKQLPAKPVSVKARFAHWALTIFTIALIIWSTTGINFSGIKATAGQITGAIFNGLI HPDWSYVYNGTGEDLVSQLWETLCIAFLGTFISAIISIPFAFWAATTKNKKWYTSRSGKF VLTFIRCFPEIVLALMFIKAVGPGSAAGVLALGFHSVGMLAMLFSEAIESLEDGPNEAVI ASGGSKWNVAMFATLPNLMPALISNTLYRFDVSVRSASILGIVGAGGIGYPLTIALNYRQ WNRVGIILIGIIVMVVLIDWISGAIRKKLV >gi|313656766|gb|GL545251.1| GENE 1205 1134245 - 1135045 1031 266 aa, chain - ## HITS:1 COG:SA0136 KEGG:ns NR:ns ## COG: SA0136 COG3639 # Protein_GI_number: 15925845 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 11 264 12 265 266 200 45.0 3e-51 MPKLDQEMMKLPKKKFQFWNLVWLVVFIGGLVVSTLETNTSLSSFFNNFGQFAEIFTQMA QPDWGYTSTAIPYLIETIKMAVLGTVIGSAIAFVYSLLIARNIIKNKYVTGVLRFVMNII RTLPDLLLGAIFVAVVGIGPVAGILALSVFTFGVVVKLFYEAIETIDSGPSEAVIACGGN KLNMISFAVMPQILPYFISYTLYAFELNVRASTVLGYIGAGGIGLYLKQTLDIFDYAKTG TIIIAVFVVVLIIDYVSSKAREALMK >gi|313656766|gb|GL545251.1| GENE 1206 1135038 - 1135811 332 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 256 1 240 245 132 34 5e-29 MADKPMIQLKNVTKVYDNGTVGLNKINLDIKKGDFVVIVGLSGAGKSTLMRSINRLHDIT EGDIVINGESITNARGKALRLIRRNIGMIFQSFNLVKRSSVLRNVLTGRVAYYPTWKSTF NLFSKEDKQKAYEALQRVDMADKVYSRADELSGGQQQRVAIARVLTQNPKIILADEPTAS LDPKTSRRVMHDLKMLNEEFGMTVVANLHSIELAREFGKRIIGIRAGEVVYDGAVENTPQ EVFDAIYSGKTKEEINA >gi|313656766|gb|GL545251.1| GENE 1207 1135844 - 1136773 1100 309 aa, chain - ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 306 1 313 318 324 61.0 1e-88 MKKFKKMLVAGLALALATVATACGSKSSSSSKDGYTPKSLTVQFVPSQAANKLEARAKPL EKMLSKKLGIPVKISMSTDYNTVVEAMKSKKVDVGFLPPDGYVLAHKQKAADVLLQAERY GIKQPGGVQTKDLVKFYRAEILVKKGSKIKSWKDLKGKSISVQNPTSSAGYIFPVAELKE KGLDVTKKGNAKLVTVTGHDQAVLNVLNGDTDAAFVFEDARNTVKKDNPKIMSQVVPIYF TKAIPNDTISVRSDMNKAFKKKLAKAFIAVGKSKEGKKLIESIYSHEGYDYTSDSAFNIV RKYDKIAGE >gi|313656766|gb|GL545251.1| GENE 1208 1137144 - 1137626 634 160 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 155 1 151 152 108 42.0 5e-24 MANDYKTILVPVDGSEAAERAFDKAVKIAIENGGKIDVLNVIDTRQFIGEMQDTLISGDT IYQMTQDSENYLVSLKKWAKDKFNFDKVDYHIRYGSPKRIISYDFIKDHHNDLIIMGATG LNAVERMLMGSVTEYVNQHAMADILIVRTDLENNKINKKK >gi|313656766|gb|GL545251.1| GENE 1209 1137759 - 1138559 606 266 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 10 265 46 297 298 133 33.0 4e-31 METNLSNKSINITSGRNFRELGGYETLSGKKIKFHKVLRSGHLADLSEADRHYLTNYGVR YDIDFRSKEETKKQPDRIPENVQYDFNPVFSDDLTNSSKSIDALETEAEKDPQFGFDHML LAYEDMIHSATARHAYQNFFKFLLSNTQENESVLFHCTAGKDRTGFGAFLLLSSLGVPLE VIKRDYLLTNITTKSFVENLLIEEKRKGSSDNLLQSIKDIQTVHPEYLDHAISVINKDYG SINEYLHNVIQLSNQDIIDLRNIYLE >gi|313656766|gb|GL545251.1| GENE 1210 1138669 - 1139145 623 158 aa, chain + ## HITS:1 COG:no KEGG:LBA0145 NR:ns ## KEGG: LBA0145 # Name: not_defined # Def: 2-deoxyribosyltransferase # Organism: L.acidophilus # Pathway: Pyrimidine metabolism [PATH:lac00240] # 1 158 2 159 159 286 86.0 1e-76 MTRTRTVYFGAGWFNEKQTKAYDAAMAALKENPTIDLEHSYVPLQNQYKGIRVDEHPEYL HDKEWASATYTNDLIGIKTSDIMLGVYLPEEEDVGLGMELGYAMSQGKYVLLVIPDEDFG KPINLMSWGVCDNAIKISELKNFNFNKPRFGFYEGAVY >gi|313656766|gb|GL545251.1| GENE 1211 1144861 - 1145697 907 278 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01884 NR:ns ## KEGG: LCRIS_01884 # Name: not_defined # Def: D-ala, D-ala ligase # Organism: L.crispatus # Pathway: not_defined # 21 278 66 327 327 308 58.0 2e-82 MSEKITREEYQREKVYGQKYKLNFWNIWTDRPYISVAIVVALIITLFTRWYLGTILILLI TAIGIYIIGHSHHPNRVLSIEFRLKASRQLSMLKSLQMGASVLMFLATYMRKVVSVDFTS AGTQDGLQTIQGMLSNTGKYGQQGSYILSLLNTVTGGSFWGTYRYASNTSQFMNDPAGLM IILWIFLLMVAPAICVLSNFFKEPYSRRASLVGGIVSLVSFVITPKVMDFLITQYAQDQN ISVRNALSVGEMAYVAIGCALMVLVIAIYRNYKKDNFE >gi|313656766|gb|GL545251.1| GENE 1212 1145827 - 1147068 1190 413 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 10 408 2 392 402 323 44.0 5e-88 MSKYTSGLSKNWHLSFYTLWLGCFITGMGYSMTMPFISLFISDLGNYNKLEINLYSGLAF AMTFIAQAIVSPFWGSLADQKGRKLMCMRASGVMALTISLTGLAPNAIYIVIMRFIQGAF SGYINNATALMAGETPHEKSGWVMSQMMTAGTAGNLVGPLLGGALSSFFGNLLGGAWGYR IPFFITGLLMFLVFLGTTFFTKENFTPVSREKMKPMKEIMASLPSIQLIVAMFITTMLVQ SATMSIDPIVSLYVKSMMPGSKNVALIAGIVAATPGLGTMIAASKIGHKMDEIGPLKVLR LGLIIGAILFAPMAVTNSPWVLAALRFLLGIASAAMMPAAQTVLTLNTPSESFGRIFSYN QSFQAIGAVLGSLLGSGISGFANYEAVFWVTGFTLLLNFLIILIFASKKNTPR >gi|313656766|gb|GL545251.1| GENE 1213 1147043 - 1148197 538 384 aa, chain - ## HITS:1 COG:PAB0724 KEGG:ns NR:ns ## COG: PAB0724 COG0477 # Protein_GI_number: 14521293 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pyrococcus abyssi # 4 358 27 379 418 71 24.0 2e-12 MPEPLYFTKTGSSLVFSTILLINPVIKLLFTPLVGYTVDKYHHKKIAIGAQLVSIVLDVI FLSLIELLSLNEQILLIALAVIGLSLADCFQETSYKASTKSFVAEEYCQKLIGYEQVVTA GTAILAPILGGVVFSWLELNWVTIIELIGEVVSLLLISMIDFYLVEQRQSSHLSSIKESF KAGINYIRQDKNLLDLLLFAVFANFSLGSIEVGLPVIMVKQLKLGSELYGMTTSCLAMGM LVASLFLSKLNLNGAYLGFTGRNGVVLSIIFAIFAFIELVENIYLITFILGLGMFLIGGI LTMSNLPFAMYLRTQVAEDYQGRVGSTMSSLVSLLSPISFAIFGLLFNTLASLWIFSFCG IILLIDSLFLLKINTPLSGVCFSC >gi|313656766|gb|GL545251.1| GENE 1214 1148155 - 1148280 79 41 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855418|ref|ZP_04645728.1| ## NR: gi|238855418|ref|ZP_04645728.1| transporter, major facilitator family [Lactobacillus jensenii 269-3] permease [Lactobacillus jensenii SJ-7A-US] transporter, major facilitator family [Lactobacillus jensenii 208-1] transporter, major facilitator family [Lactobacillus jensenii 269-3] permease [Lactobacillus jensenii SJ-7A-US] transporter, major facilitator family [Lactobacillus jensenii 208-1] # 1 41 1 41 405 63 92.0 7e-09 MAKQSKKQLLLAVSSLGMGNLASSIFSFCLSLYTLQKLGQA >gi|313656766|gb|GL545251.1| GENE 1215 1148375 - 1149205 863 276 aa, chain + ## HITS:1 COG:no KEGG:LDBND_2022 NR:ns ## KEGG: LDBND_2022 # Name: not_defined # Def: transcriptional regulator # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 51 276 1 226 230 192 46.0 1e-47 MNFTFKKLRKMQNITLSQAANNICSVSMLSRWENGQGKMDFEKVVELLERINLTPAEFLA LSGLNQPDDLSQDLEKAWLTKDQAKLQQLTTTALAKFQTSQKLIDLNYAAICASLYYNLS RKNLLSISNQNLLNKELSHLSVWGQENLSLFRTIINVLSPRIIYQVSYQVIEYLDFIQAA GHDTFYFAITTLFEAAIALFKANNFKYAQKILDKLNTLTFKERDMQLIIGRHFLNQLAEY HNQPNEQKIIKTISFLREIGANHLAHYFLTIFNQIK >gi|313656766|gb|GL545251.1| GENE 1216 1149261 - 1150118 1092 285 aa, chain - ## HITS:1 COG:L128697 KEGG:ns NR:ns ## COG: L128697 COG3833 # Protein_GI_number: 15673667 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Lactococcus lactis # 1 285 1 285 285 340 65.0 2e-93 MKSYAAQRRLSLIFRYALLTILSILWILPIVWIVLASFSYNDTGFVSTFWPEKFTLQNYI GIFTNPQYPFGNWIINTLIISIASAIISTFITISVAYVLSRLRFKLRKPFLQIALVLGMF PGFMAMIALYYILKGLNMLNLGGLLLVYVGGSGLGFYVAKGFFDTIPRAIDEAAEIDGAT KWQVFWNIGLPLSKPMIVYTALTAFIGPWVDFIFSGIILSTSGNAKTYTIAYGLYNMVHN SKGASTTYFAQFIAGCVIIAIPITILFIFMQRFYVNGITAGADKG >gi|313656766|gb|GL545251.1| GENE 1217 1150121 - 1151479 1293 452 aa, chain - ## HITS:1 COG:L128696 KEGG:ns NR:ns ## COG: L128696 COG1175 # Protein_GI_number: 15673666 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Lactococcus lactis # 1 452 1 452 452 520 61.0 1e-147 MFKRKNHLPPKATYKEVWSKGDAITKCSFFIMGLNALKHGQWAKGLSLLLSEIVFFAWIC LTGFSSIKALSNLGLIKKKQVIYDASQGVYVTKQPDSSVLILLFGLLALMVVIGFIWLYI VNLKSVRKNYVLERDHEHILTNKEELANLFDERLHTTLMTIPVLGIFLFTILPTVFMISM AFTNYDRQHSIGFSWTGFKAFGNVLSGDLAGTFFPVLGWTLIWAVAATATTFFFGVLLAL LIESKGIKHKGFWRTIFVLVWAVPQFVSLLMMAQFLDYQGAFNAILMNLHLISSPIHFID NQAAPWVARITVIFVNMWIGIPVSMLVSTAIIQNLPQDQVEAAKIDGANAIQIFKSITFP QILFVMAPSLIQQFIGNINNFNVIYLLTGGAPMNNNYNGAGSTDLLVTWLYNLTFGQEQR YNASAVLGILIFILSATVSLIAYRRTNAFKEG >gi|313656766|gb|GL545251.1| GENE 1218 1151538 - 1152752 1693 404 aa, chain - ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 1 403 1 407 410 322 48.0 6e-88 MKIWKKLALATAALAMVGTLSACSSNKSSSTSSNNKNQLTLWVDTEQVPYYKTIAKDFEK THKGIKVRVTQSPNGSANAKTDVGKDPSKAADVFEVPNDQLGQMAEAGYINPLSPTDTKN IKTNYIDEAYKGVAWNGKVYAYPYAQQAQTIYYNKSKLSASDVQDWDTLTSKGVVATDFT NAYVMWPVFFSAGTKLFGDNGEDLKGSTFNSQEGVNALTWFAEQKKNKNVMQTSNALNQL KKGKAAAILDGPWNAANIKKILGKNFAVAKYPTITVGGKKVQMEAFLGIEGFAINSHTAN AKASAQLAAFITNKKAQLIAHDKAGQIPVLKAAINSSDIKNDNVAEAVIEMAKSGNSVLM PKMAQMATFWDGSAPLISGAYDGKIKPAQYKAQLDKLAKKIEKK >gi|313656766|gb|GL545251.1| GENE 1219 1152772 - 1154361 1402 529 aa, chain - ## HITS:1 COG:L128693 KEGG:ns NR:ns ## COG: L128693 COG0366 # Protein_GI_number: 15673663 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 4 527 15 540 541 663 60.0 0 MTPWWKNAVVYQIYPKSFQDSNGDGIGDLKGIISRLDYLEKLGVDAIWLCPIYKSPGADN GYDIADYEAIDEQFGTMADLDKLIQKARQHHIRIVMDLVVNHTSDEHKWFIESRKSRENP YRDFYVWRDKPNKLTSAFSGSAWQYDEATKQYYLHLFAKKQPDLNWKNPKLRQKIYDMMN FWIDKGIAGFRMDVIECIGKEPDQEITANGPHLHEYLQEMNRETFGKKDFLTVGETWSAS LADAKKYIDPKRHELSMVFQFEANSLDQVGASKWDLKKPDLAELKAILTKWQENLAWNSL FWENHDIPRVISRFGDDGKYRVEAAKMFAIMLHLLKGTPYIFNGEEIGMTNCPVESIDDV NDIESRNMYFAGLEKGKSKEELLRSINAKGRDNARTPMQWDDTANAGFTTGKPWLHLNPN YREINVKACLADKNSIFYTYQQLIKMRHNYPMLVDGDFKAVATSDNIFAYERVLGDEKWL VVCNLTKEEATFTSEYKIQNALISNYPARTTLQDITLKPFEAFACQVTC >gi|313656766|gb|GL545251.1| GENE 1220 1154378 - 1155499 1085 373 aa, chain - ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 354 1 364 377 511 67.0 1e-145 MVEINLNHIYKKYPDAENYSVTDFDLHIKNQEFIVFVGPSGCGKSTTLRMIAGLEDISKG TLEIGGKVMNDVAPKDRNIAMVFQNYALYPHMSVYDNMAFGLKLRHYSKEEIDKKVKSAA EVLGLAHLLDRKPAALSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAKLRVSMRAEIAK LHQNLKTTTIYVTHDQTEAMTLADRIVIMCDGKIQQIGTPQEVYNHPVNQFVAGFIGSPQ MNFFEVTYQDGKISDNKGLVLEVPEGRAKQLEQAGYNGKKIIFGIRPEDIHSEGAFLETW PKSAVKAKVVVSELLGATSQLYLNVDGTEFVGIVNARDFHSPGQEVTLVLMLTRVTSLIV KLRKQFLPINVSA >gi|313656766|gb|GL545251.1| GENE 1221 1155505 - 1155942 487 145 aa, chain - ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 3 132 80 209 226 122 48.0 2e-28 MAYQQAIKKMTQADILPGISELLEQAKTNGLKMAIASASMNAPTILKQLGLLKEFDAVVD PKTLSHGKPNPEIYQKAQALLDLEADEVISFEDAASGVAAIKAAKQFAVGIGDSQVLGQA DLVVSDTSQLDLTKIVATFKSKKVG >gi|313656766|gb|GL545251.1| GENE 1222 1155957 - 1156175 350 72 aa, chain - ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 2 71 1 70 226 71 48.0 4e-13 MLKGLIFDLDGVITDSARYHLAAWNALAEELGIKLPAKASDELRGLARMDSLELILRYGH QENKYSLAEKKL >gi|313656766|gb|GL545251.1| GENE 1223 1156160 - 1158427 2700 755 aa, chain - ## HITS:1 COG:L128690 KEGG:ns NR:ns ## COG: L128690 COG1554 # Protein_GI_number: 15673659 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Lactococcus lactis # 1 747 4 744 751 871 58.0 0 MKRIFEINPWNITSHNFPKEDMRLAESITSIGNDYMGMRGNFEEGYSGDSLSGTYLAGVW FPDKTRVGWWKNGYPEYFGKSLNAPSFIGIQILVDGEKVDLAKCDFSDYYQNLDMHQGLL TRSYIYHGKSNIKFTFERFLSNKIQEAALIKVKAQVLKGSAKLEFISTLDGNVVNEDSNY EEHFWKPILEDEKEKCIQLITKENPFQVPQFTVLLKQSLRVNGEKVHGEVETKAGYLAEK VTTMLDAGEKYELEKDVIVITSRDVAPDEQAERADLLMHELCEHTFSENLAEHEAIWQKR WEKSDVQIKGSDEAQQGIRFNIFQLFMTYYGQDARLNIGPKGFTGEKYGGATYWDTEAYI IPMYLAVAPKEVTHALLEYRHKQLPGAYHNAKQQGLKGALFPMVTFNGIECHNEWEITFE EIHRNADIPFAIYQYTEYTGDESYVQDEGMDVLVGTARFWADRVHFSKRKHKYMIHGVTG PNEYENNVNNNWFTNQMAAWLLSYTLERLPKAKLEALKRLAVSDEEKAHWQDIVDNMYFP EDKELGIFVQHDTFLDKDIRPVSTIPASERPINQHWSWDKILRSPFIKQADVLQGIYFLN NHFTKEQKEKNFDFYEPLTVHESSLSACIHAILAAELGKQDKAVELYQRTARLDLDNYNN DTSDGLHITSMSGSWLAIVQGFAGMRYYNDELCFKPFVPSQWQGYSFKMNYRGRLLEVNV SDEIKLRLISGPSLKVKVYDQEVLLEEGQEKCLKA >gi|313656766|gb|GL545251.1| GENE 1224 1158542 - 1160248 1665 568 aa, chain - ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 536 1 551 584 544 50.0 1e-154 MQEASLRHRPESEDCFLIDKNHLRLRFHTAKDDVQKVIVHYLDSYYDLKTAQKQEMTKIG SGQVADYYMTTLELPLHRCQYTFEVVGQDDSHIIYGDRGIREYNDSNLYDYGQFFKVPYF HEIDMAKTPAWVKETVWYQIFPERFNNGDKNNDPVGTKPWNSADHPGREDYYGGDLQGVL DKLDYLQELGINGLYFCPIFKASSNHKYDTIDYLEIDPDFGDKKLFKKLVDEAHKRGMHV MLDAVFNHLGDQSKEWQDVVKHGRDSKYFDWFHINYLPVTPFKDPSKGEEMPPYDTFAFE PHMPKLNTANEEVQKYLLNIATYWAKEFHIDAWRLDVANEVDHHFWKKFHVKLMEINPNF YIVGEVWHSSQPWLNGDEFTGVMNYPYTQQIEDHFLTGKISAKMLTQVLFDQLMLYRDCV NSGMLNMLDSHDTARLLTLADENQDKALNALAFELMQPGSPSIYYGTEMAMTGGNDPDCR KPMDWTKTGNAYWQKVHALIVFRRKYASVLSQSDIKLAVEDDLIVVKHGRITAYFNTTNY EIKIDKKASVSNGYQNGVLSPNGYILCE >gi|313656766|gb|GL545251.1| GENE 1225 1160250 - 1161665 1057 471 aa, chain - ## HITS:1 COG:lin0223 KEGG:ns NR:ns ## COG: lin0223 COG0366 # Protein_GI_number: 16799300 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Listeria innocua # 1 433 79 511 553 267 35.0 3e-71 MADMEDLISALHQNGIRIIMDFVLNHTSDQHPWFKDAIANPKSIYRDYYLFAGENGHRPN NWGSFFGGSVWEPDPKTGQFYFHLFDKHMPDLNWKNPGVRKAMLDIAEFWLKKGIDGLRL DAFIHIAKADFRQNYPAPEGQIPVAEPFFANLPEVVHYLRPFCQQIKQDYPDCLLLGEAA SANVNLAANYTDPENNLLDAAITFRCFTEDDSQLDSAIPANYQVKPFDFEAFKLTQMIWE QTLAGISKPVLYWSNHDMSRLRTRIAKNDLQAKSLAMLLYLERGIPIIYYGEELGLKNLA FQQLDDFKDQTVFDFAKKAEKQGYSEAEILTMVSQTHKMPARGVMPWKKAENYGFSKHHP WLTGKKQDEHFAEAEIADSESFFNFYRQLIALKKTPLFMEGSYYLHPTSSKSFIYQRDLG DESALVVVNLTNKPLKVKTKYQKVILSNGQYSLNDNELQLAPFAGLVLERN >gi|313656766|gb|GL545251.1| GENE 1226 1161644 - 1161892 249 82 aa, chain - ## HITS:1 COG:YPO3696 KEGG:ns NR:ns ## COG: YPO3696 COG0366 # Protein_GI_number: 16123835 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Yersinia pestis # 4 66 7 69 555 94 63.0 5e-20 MKKWYDEAIIYQIYPKSFQDSNNDGIGDLQGIKQRIPYLKRLGINTVWLNPVFVSPQVDN GYDVANILQLMKRWAPWLIWKT >gi|313656766|gb|GL545251.1| GENE 1227 1162053 - 1162433 401 126 aa, chain - ## HITS:1 COG:BS_yvdE KEGG:ns NR:ns ## COG: BS_yvdE COG1609 # Protein_GI_number: 16080516 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 10 125 200 315 316 115 45.0 2e-26 MQERNLEPKIFRTGNHSHLAEKLIDEQIENIKPNTCFICASDRLAIGVCRALSRLNKKLP EDYGVIGFDGVFLDQVSNPQLTTVKQQIFKMGDMLAQLILEKIKQSGSAQGQTYVKPELV VRGTTK >gi|313656766|gb|GL545251.1| GENE 1228 1162520 - 1163002 504 160 aa, chain - ## HITS:1 COG:BS_yvdE KEGG:ns NR:ns ## COG: BS_yvdE COG1609 # Protein_GI_number: 16080516 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 133 1 133 316 142 56.0 2e-34 MVTLSDVAKEANVSKMTVSRAINHPEQVTPELLALVEKAMAKLDYHPNSIARALVNNRTN VIKFVTLEDIDTTEPYYMNLLFGVARGLKADSYAIQLVTDIDQIQKGNADGYIITGAREY NYPIFNELKKPFIFLVKLQAILTLSILTIVMVLQLRLNML >gi|313656766|gb|GL545251.1| GENE 1229 1163002 - 1163766 591 254 aa, chain - ## HITS:1 COG:lin2049 KEGG:ns NR:ns ## COG: lin2049 COG2365 # Protein_GI_number: 16801115 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 2 252 76 326 326 92 29.0 1e-18 MKLIKLEGATNFRDLGGYVGLGNKKVRYGKIYRADSLSSLSRVDIKKLNELNIVYDCDLR SHYEQEMAPDKAWKAEFIDCHLYAESPAEHVDKAILTKLIKNIKPMDNYLGQIYQKVLLS THGQKIFKTVFEKLLTLENDQALVFHCSAGKDRTGMIAALILMGLGVSDDDITRDYLVTN RLYHFSYQKNQPSDDEMANLVAEMNLTKADSAGIKGITETIRMGWGSFDNFFIHVLGFSK DDLQEIRTKFLEAK >gi|313656766|gb|GL545251.1| GENE 1230 1163780 - 1165276 1479 498 aa, chain - ## HITS:1 COG:SPy1684 KEGG:ns NR:ns ## COG: SPy1684 COG0554 # Protein_GI_number: 15675545 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 3 498 4 499 508 730 70.0 0 MVESYIMAIDEGTTSTRAIIFNHAGDKVYVAQKEFPQLFPEPGWVEHDPEQIWNAVQTTV ASAFINSQIRPDQIAAIGITNQRETTVIWDKKTGRPVYNAIVWQSRQTTSLAEELKSKGY SDLIKEKTGLIIDPYFSATKIRWILDHIENGQKRAESGDLLFGTIDTWLVWKLTNGAVHV TDYTNASRTMLFNIHDLTWDEDILRILNIPEQMLPEVKSNSEVYGQTTPFEFFGGRVPIA GMAGDQQAALFGQLALKPGMVKNTYGTGSFIVMNTGTNPTSSNNNLLTTIAYKVNGQVVY ALEGSVFVAGSAIQWLRDSIKLIKTSPESEQAARNSTSENEVYVVPAFTGLGAPYWDAEA RGAIFGITRGTTDNDLIKATLQSLAYQTRDVVDTMQHDSGIAIPALRVDGGASNNDYLMQ FQSDILGTKIERAATLETTGLGAAFLAGLSVGYWQDIDELKKIAKIGQTFSSEMTNSERD KLYAGWQKAVKATQFFAH >gi|313656766|gb|GL545251.1| GENE 1231 1165407 - 1166219 893 270 aa, chain + ## HITS:1 COG:PM1261 KEGG:ns NR:ns ## COG: PM1261 COG0351 # Protein_GI_number: 15603126 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Pasteurella multocida # 7 264 6 264 273 208 42.0 1e-53 MSKKEIIALTIAGNDSDGSAGMPADLHAFYARKVYGMGLMTAAVAGNTTGIYAAQIMPVD FIQKQFDVLNDDFSIKALKTGMLANKEIINCVADNIEKYDMGKVVIDPVIITKHGNSLLD DDAYQTFLNRLLPLADIITPNYYEQKKLTELPLDSEAEILVGAKKLQDLGAKNVLMKGKH TGDSSEVVDILLTEDGQVHKFTKPYYETERVNGTGDTLSAVITAELAKGTNLIDAVKIAK DFTYEAISHPIIVGSKWGPINHWAAEDKLN >gi|313656766|gb|GL545251.1| GENE 1232 1166272 - 1166904 657 210 aa, chain + ## HITS:1 COG:SPy1034 KEGG:ns NR:ns ## COG: SPy1034 COG3442 # Protein_GI_number: 15675031 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 6 199 18 211 263 176 46.0 3e-44 MTDKLIKIAYLYEDLMNTYGDSGDVKILRFLLKRQGYDTQVDNISLGDEFNAFDYDFVFF GGGQDFEQTVVAKDIPRHKDTLEKYINAGHPMLCICGGYQFMGDYYKTNSGVTIKGLGIF PLHTVFKSDKRMIGDTKYMTEWGEVVAFENHSGQTYFDNTDKLHPLGRMIEGYGNNPQDK AEGLRYRNFIGSYSHGPLLKMLTWLMQLLK >gi|313656766|gb|GL545251.1| GENE 1233 1167000 - 1167887 828 295 aa, chain - ## HITS:1 COG:SPy0036 KEGG:ns NR:ns ## COG: SPy0036 COG0015 # Protein_GI_number: 15674278 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Streptococcus pyogenes M1 GAS # 1 294 137 430 430 412 68.0 1e-115 MGRTHGVQAEPTTFGLKLARWYAEIKRNIDRFEHAASGVESGKISGAVGNFANVPPEVET SVLKQLGLNQQEITSQILPRDLHAEYLASLALLATSIENWATEIRSLQRSEIHEVEEHFR AGQKGSSAMPHKRNPIGSENLCGLARVVRGHMITAYENVSLWHERDISHSSAERIILPDT TILLDYMLNRFNRILANLDVFPETMLKNMNRTYGLVYSQRLLLKLIDGTSLSREAAYDMV QKLTAKSWDEQKQFKDLVLNSPVMDYLSKADVEDAFDYHYYLKHVDDIFKKVGLE >gi|313656766|gb|GL545251.1| GENE 1234 1168019 - 1168294 346 91 aa, chain - ## HITS:1 COG:BH0625 KEGG:ns NR:ns ## COG: BH0625 COG0015 # Protein_GI_number: 15613188 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Bacillus halodurans # 1 85 1 85 433 121 68.0 4e-28 MIERYTRPEMGKIWTDQNKYQAWLEVEIAATNAWSEVGEVPAEDAEKIRQNASFTAERVA ELEAVTHHDVVAFTRTVSESLGTEKSGFTLA >gi|313656766|gb|GL545251.1| GENE 1235 1168294 - 1169586 1676 430 aa, chain - ## HITS:1 COG:SPy0160 KEGG:ns NR:ns ## COG: SPy0160 COG0104 # Protein_GI_number: 15674367 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pyogenes M1 GAS # 1 427 1 427 430 591 63.0 1e-169 MTVVAVVGSQWGDEGKGKITDFLGQDADLTVRANGGNNAGHTIVFSGHTFKMRLIPSGIF AAKKAAVISNGVVINPEVLLGELTYLQEHGVDTSNLKISNRAHIIMPYDILQDVYQEEAK GANKVGTTKNGIGPTYMDKASRIGIRVCDLLEKDTLAEKLRFNLVEKNAIFTKIYGKEAL DFDEIYNKYLEFGQKIKQYVADTSVVVNDAIDSGNQILCEGAQGIMLDIDEGTYPFVTSS NSIAGGFASGIGIGPNKIDTVLGICKAYTTRVGAGPFPTELVNETGDYIREAGHEYGTVT GRPRRVGWFDTVALRHAKRVSGIDCLSLNLLDVLTGLKTIKIATAYELDGEKIDYYPASL AELERCKPVYEEMPGWDEDITKAQSLADLPENARKYLERLEELTGLKLATVSVGPDREQT IVIKNPWNFN >gi|313656766|gb|GL545251.1| GENE 1236 1169767 - 1170759 1079 330 aa, chain + ## HITS:1 COG:SA1172 KEGG:ns NR:ns ## COG: SA1172 COG0516 # Protein_GI_number: 15926918 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Staphylococcus aureus N315 # 7 329 1 323 325 491 70.0 1e-139 MSNYFSMEAFDYNDIQLVPNKCIIKSRKEADTSVKFGNRTFKIPVVPANMQSVINEQLAI WLAQNDYYYVMHRFQPEKRADFIKMMHDKKLFASISVGIKDEEYTFIDELVKQDLIPEYI TIDVAHGHSDYVIKMIKYIKDKMPDSFLTAGNVATPEAVRELENAGADATKVGVGPGRAC ITKLKTGFGTGGWQLAALRMCSKAASKPIIADGGIRYNGDIAKSVRFGASMVMIGSMLAG HEESPGNVIKIDGKVYKQYWGSASEVQKGGHHNVEGKQLLVPYRGSIKDTLKEMQEDLQS SISYAGGKNLQSIRLVDYVIVKSSIMNGDI >gi|313656766|gb|GL545251.1| GENE 1237 1170778 - 1171686 888 302 aa, chain - ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 2 290 10 299 306 164 35.0 3e-40 MNQKVKWSILAAVACVFWGISGLFGKNLFNSNPLITPIFLTKIRMVISGIIILLFAAITK QKPFAIWKNKKDALNVAAYGLLGLVPVQLFYFIVVKEANASIATILQFVGPFFVIFWMLI TKQQVYRNLDLISATLAFLGVFLLATHGNLQTLTLSPGALLFGMLSAVGVATNTLIPRRL VSLYPTAVITGWGLLIAGIALFILNPSVPKISITFGMITDLSGVIVIGTLIPFQWMAGAL RYISPSTASLLDAFEPISAMIGSILVFNLALTPMDIIGSVIIIGAVLLVSLNPPRLTKKA HR >gi|313656766|gb|GL545251.1| GENE 1238 1171819 - 1173228 1490 469 aa, chain - ## HITS:1 COG:FN0504 KEGG:ns NR:ns ## COG: FN0504 COG0531 # Protein_GI_number: 19703839 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Fusobacterium nucleatum # 10 460 1 453 453 368 52.0 1e-101 MNDRRESDKLGFWSIVLLAINSIIGSGIFLTPGSVVSRVGSKALLVYLIAASFAAILAIT FAAAAKYVTKSGAAYAYSKAAFGENVGFYMGVLRYFSASVAWGVMAVAVIKSTISIFGGD PNSFQNVSIGFVVLMLLIWVINLFGQSTVKYIMNLSTIGKLLALGLVILAGAFLLLSTGE NHFGEIDTLQVAGKNVVPAVTTSSFVMAIVSAFYAFTGFEAIASGSEDMKEPSKNLPRAI PLAILIIALVYIGVVAVAMVLNPRELLETKQVVAVAAIFSSPILRAIILVGALVSMFGIN IASSFHAPRILEAMARENQFPKWLAKRTKRNFPARTFLITLILAVLVPMAFHYSTDNLII LSATVRFLGFIVVPLGVIKFYLGRNGEPVLTTNRNKITDLIFPIFSILITLFLLYKYDWA AEFSVTINGVTSLNWFAIGALIFGAVILPAILFVLTKNERKKAETMLEK >gi|313656766|gb|GL545251.1| GENE 1239 1173242 - 1173973 860 243 aa, chain - ## HITS:1 COG:FN0505 KEGG:ns NR:ns ## COG: FN0505 COG2071 # Protein_GI_number: 19703840 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Fusobacterium nucleatum # 3 221 4 222 243 228 51.0 7e-60 MDKPIIGISGSEIIDNGGIFPGYRRSYVNEDYVDSVVKNGGIPFIIPFTESDEVIKEQLN HVQGLILSGGHDVDPHLYNEEPLQKLGAIWPERDHFDMLLLKLAEEKGIPVLGICRGFQI INVFHGGSLYQDVSYRKELTLKHDQGSKPDLPTHSVDVMFDTHLAKVLAEEKILVNSFHH LLVKNPGPDLVVSAKASDGVIEGLETKDGQVMGVQWHPEMLHNNEHVSYQNNLFKNLIIK ASK >gi|313656766|gb|GL545251.1| GENE 1240 1174053 - 1174703 748 216 aa, chain - ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 3 216 7 214 215 136 34.0 3e-32 MQIENIQAFAHKYLDNDTTGHDYWHGKRVANLAQKLFLQDYPRVSKRQLDLLLVMGYWHD TIDEKICSNPGKVTDEMKQLLEKEEFRQDEISSVLFVLNHMSFSKNLEHYFQLPMIGQYV QDADRIEALGAIGIARAFAFGGSHNQKIYDPAIKPQILKSHKQYRNHEATTVNHFYEKLF HLEQTMNTPAGRKIAHERTLYMHKFIDQFLKEWEGE >gi|313656766|gb|GL545251.1| GENE 1241 1174792 - 1176831 1340 679 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 21 642 144 780 815 520 44 1e-146 MTYFDNDFDNLFNELNKSFFNDDNGNTRYYFSSNSANPQTVQQIEKPKQKENKIGRDLVK EAKDKKFDPVIGRDDQINAVIEILSRRKKNNPVLIGPAGVGKTSIVEGLAQRIASGDVPD KLRKMHIYELNINDMVAGSSLRGSFEEKIKKVIDLAQKDPNTILFIDELHNIVGAGSTDS ENNSGDAANILKPALASGDLKLIGATTTSEYRQIEKDPALARRFQAVDVPEPSGEVTVKI LQGLKKKYEEFHHVKYSDDSLKLAVELSQRYIQGRYLPDKAIDLMDEAGAKKSLGVDSTD EDSLKQRIHDYQLIKDEAAKAEDYDKASEYKDKISKLEEQLKHTDKANEPEVTANDIYAL IEQKTKIPMSELHADEAKKNLDLAKKLKNVVIDQDKAIDIITDAIARKQVFKDANRPTGS FLLTGPTGVGKTELAKQLAKELFGGSDHLIRLDMSEYQDQMAVNKLIGSAPGYVGYGEGG QLTEKVRHEPYSLILLDEIEKANPQVFNALLQILDDGRLTDAQGRTVSFKDTIIIMTSNA GFSDKVLKDGEVDKDALIKALELYFRPEFLNRLDAIVPFNHLSSKDMTKICELYLQKMEN TLAKRNIKMTISDEAKKVLAKRGYDKKFGARPLRRVMEQDLQTPAAKLIMTEPDLKAVDF TADEKHLYLNGKPIVDLVA >gi|313656766|gb|GL545251.1| GENE 1242 1177031 - 1177912 542 293 aa, chain - ## HITS:1 COG:lin2722 KEGG:ns NR:ns ## COG: lin2722 COG4814 # Protein_GI_number: 16801783 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 52 272 42 270 291 102 27.0 9e-22 MKRLMQKMRLNKDYCWILSALIVVIATAIPTIIWVNSANKIRAQRHNSQVSPVIMVPGSS ATTERFNQLVKLLNQKTDRKHSLLKVNVGTDGSLTYSGSISKQDQEPIIVVGFKNNHDGY SNIKKQAKWLNIAFNALSKQYKFNNFKAFGHSNGGLIWTYWLEHYYSEYSSIINIKVLMT LGSPYNFSESNIKNKTQMLTDFIKYKSKIPKSLTVYSISGGENYESDGLVPENSVEAAKY VFQKQVAHFTAMTVTGLDAQHSSLPQNKQVVELIKQYVLQKDNQNRRMIRKSR >gi|313656766|gb|GL545251.1| GENE 1243 1177878 - 1179269 1435 463 aa, chain - ## HITS:1 COG:lin2906 KEGG:ns NR:ns ## COG: lin2906 COG1455 # Protein_GI_number: 16801965 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 433 11 441 450 139 26.0 1e-32 MEQKLVKLLLRMRERVFFRAAQRTFAMIMPFALIGAFFQMFSKILLSRDSLFFNILNLSK VFPQIVFQIARFISGGVIFAIFGLFGVYAAYFMALYTARIYNKDSKLAGITAIIAVFLIR SPNLSMNNGFSAVDLQLLSIKRMFTTLFIGYLVGQVFRFLGQDHAIKRIEHVFDIKDRAF AAVKPVVASLFMAVVVASFIYVLQVKIFNSDLVTTIADKIITSNNLLINVPLVLLAIFLH WLGIGTPLELAMSGQNGGAATANFNYALTHGSSWNVPFKYLGSNLVQSYGTLSGAAFTVS LIIAILLLDRNKQNKLVAKASIFPALFGVFNGLGVAFPVYLNPLLVLPVLVIPLVNIVIS SLAIALHLIPVSVYPVLAGTPGVLIPYIGTNGSWQALLMTIILVILDVYIIMPFYKINMN VQKRIAEIDALQDSRVISFKGRKKIIKEELGNNEKTYAKNATK >gi|313656766|gb|GL545251.1| GENE 1244 1179376 - 1179594 228 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472732|ref|ZP_07813220.1| ## NR: gi|313472732|ref|ZP_07813220.1| conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 1153] # 1 72 1 72 72 107 100.0 2e-22 MTKKIELDPETERLVSTYCEKMHVDFNTLTNKALKYYIVNKLSSKEVRQAKRKMKLTLNL SMTYSKATIVLG >gi|313656766|gb|GL545251.1| GENE 1245 1179656 - 1180453 587 265 aa, chain + ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 7 261 4 255 393 165 36.0 6e-41 MEKRIDPVKLQYLLLGSLIANTGISFIWPLTTIYLTTYLHESLTMAGIVLFLNSAFTLLG NLLGGFLFDRWHPYQTIASGVFIAAASSLALIFWHGWPFYAIFLLTLGIGNGILVTSLNS IATFMKSHNPSYIFNCLYFTQNLGLVFGSLIVGFVLPFGITYLFILAFLMFTSFEVIVIT KYHGLNLVHGHNNQTKLNKVAKNHMNKAQFYQILAILNCVLCVWIAYEQWNSNISTYMLS INLSVQSYSLLWTLNALLIVIFNHF >gi|313656766|gb|GL545251.1| GENE 1246 1180408 - 1180872 204 154 aa, chain + ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 12 120 257 365 393 81 36.0 7e-16 MDFKCTFNCNFQPFLTHFDDFLTEHLKGRLYLGFTLFAGAFLLLLFARSWTIFAISMALL TTGEVLCLPAVSTYVNDRADDSEKGYYQGIVQSVTSAGRAFGPLIGALIIDNSSYLILFI FCTFIVIISIIIFMLSNQLKLTHQRRNEVSDGTN >gi|313656766|gb|GL545251.1| GENE 1247 1180859 - 1181377 437 172 aa, chain + ## HITS:1 COG:BS_yttB KEGG:ns NR:ns ## COG: BS_yttB COG0477 # Protein_GI_number: 16080087 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 8 172 2 167 397 104 38.0 6e-23 MEQTKQDPVKIRFLLLGSLIYNIGISFIWPLTTIYMHQYLHQTLTVAAIVLLLYYGTTLL GNAIGGAIFDKITPFKTILLGAIITSFCALAMFLIPSWPFYPIFLVIYGIGDGVVTTAIN SIATTMKTHASSFFFNLLYMTRNLGLVIGSLLVGIITFLGPQAWFASALLFL >gi|313656766|gb|GL545251.1| GENE 1248 1181512 - 1182042 381 176 aa, chain + ## HITS:1 COG:BH3282 KEGG:ns NR:ns ## COG: BH3282 COG0477 # Protein_GI_number: 15615844 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 2 171 217 386 401 115 32.0 4e-26 MFFCWLAYEQWDSNLSVHMLNHGISTAEYSFCWTLNSALITISQPILTYFDSYLSKKINA RLYIGFTLFASSFLILIGANNYSNYLLAMFILTCGEALAFPAVSAYVHAHAPKNQAGRYQ GLVLAGTSAGRALAALFGAILLNHMTMPVLLLILASLIIISLINFILFNSLKQKDA >gi|313656766|gb|GL545251.1| GENE 1249 1182325 - 1183314 1363 329 aa, chain + ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 327 2 328 328 389 57.0 1e-108 MRVLVTGGAGYIGSHTVNALLEDGNDVVVLDNLYTGHRQAVNKKAKFYHGDVLDTSLVTN ILMDEKIDAVIHFAAYLLVGESVQEPLKYYHNNVSGMISLLKAMKTAGVKNLVFSSSAAT YGIPKDLPIKETAPTNPINPYGETKLMMEKIMRWTDKADGIKSIALRYFNVAGASLDASI GEDHAPETHLVPNILLAAKNGTGNFTIFGNDYNTPDGTNVRDYVHVVDLAQAHVLALHYV VKNQKSDVFNLGSANGFSNLEILQSAIKVTGEDIPYTMGPRRGGDPDSLVADSTKARTIL NWHPQHDNIDDIISSAWKWVQTHPNGFSE >gi|313656766|gb|GL545251.1| GENE 1250 1183369 - 1184304 653 311 aa, chain - ## HITS:1 COG:SA2230 KEGG:ns NR:ns ## COG: SA2230 COG1680 # Protein_GI_number: 15928020 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 12 173 59 236 498 82 35.0 1e-15 MRQSLDNVGFEGSVLVIKNGKTYLNYATANKTDTSYLINSVQKFITGAAIMKAVQEGKLS LNDSLAKFYPTVPGANQVTILNLLQMTSGLTIDKALGTKPFISDKKNLEYAIKNTKFDEK MLGKASYSTLNYVFLSNILSDVYHMSYQKLITKSFINKLKLRHTAFSWANNKTLKKIDFV LGQQQLSSNGKFVTQKLDLNEIHGELGAGSLLMDNKDLSKCVKYILAGNYLSKSSIKALY NLDNSANISYSGGFYIHNTYFGSNGGDNGYYTFLRTSKDAKTVIIAQTNKVRGNFYELRS VMDQLMVALQK >gi|313656766|gb|GL545251.1| GENE 1251 1184288 - 1185619 1085 443 aa, chain - ## HITS:1 COG:SPy1309 KEGG:ns NR:ns ## COG: SPy1309 COG3966 # Protein_GI_number: 15675258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Streptococcus pyogenes M1 GAS # 5 417 3 416 416 340 43.0 4e-93 MSNRRRLWQIFGPVICAVLLLIAVLLFPWDRTYSANSIFEAATSQSDRIFKGQRMKQEAL AGKYVPFFGSSELSRMDSLHPSVLAYKYNRNYTPFLLGGAGSQSLAHFYGMQGIKSQLTN KKAVVIISPQWFTKKGQDKNAFSLYYSNLQAINFLLDAKDSIATRYAARRLLQMPSGKSS ETVKYALMTVASGQPLSESQKLVLQTRRRMLVNEDTFFSTFQLPDRVNKIKAQAKLLPDK YTINGLTKVADAEGSLHTTNNKFAIDNTFFKTRLNEKELKKLKGSQKHFDYTKSVEYSDF ELMLKQFAHEHTDVLFIIPPINAKWAKYTHLSNKMYQKSVKKIKYQLASQGFSNITDLSK DGGKKYFMQDTIHLGWNGWIAVDKAVKPFMQKSYSNTNYRIDNYFFTRNWQNRTKVESIK TVKLSNKTVVPSTGSKKNSAPVS >gi|313656766|gb|GL545251.1| GENE 1252 1185612 - 1185785 192 57 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1816 NR:ns ## KEGG: LGAS_1816 # Name: not_defined # Def: D-alanine--poly(phosphoribitol) ligase subunit 2 (EC:6.1.1.13) # Organism: L.gasseri # Pathway: D-Alanine metabolism [PATH:lga00473] # 1 57 23 79 79 81 78.0 1e-14 MDENIFENGLLDSLATVQMLLNLQEETGIQVPVSEFNREEWDTPNKIVAKVESLENE >gi|313656766|gb|GL545251.1| GENE 1253 1185880 - 1187109 1061 409 aa, chain - ## HITS:1 COG:SPy1311 KEGG:ns NR:ns ## COG: SPy1311 COG1696 # Protein_GI_number: 15675260 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pyogenes M1 GAS # 4 408 11 418 418 350 47.0 3e-96 MINLQPYSNPQYFILLIGLLLPLIIGLYFGRRFKVYEAIFSIVFLVLTFGGDKWQQGVTL LGYIIYQFLVTFGFQKYVKNGGKKTEIFSLFVILAIIPLTMVKVAPVIPANEPITIGFLG ISYLTLKTVQVIMELRDGTIKEVDPIMYARFLLFFPVISSGPIDRYRRFVKDYNEAPSRE KYLDDLSVAVKYLFQGFLYKFVLGWLFGSYWLPQLSQAAIINGKINGGLHLSWALVGYMY CYSMYLFFDFAGYSLFAVSISRFMGIRTPMNFNKPFSSPNIKEFWNRWHMTLSFWFRDFI FMRFTFFAMKKKLFKNRIRLSQVAYLINFLIMGFWHGVTWYYVVYGIFHACAIIINDYWL RFKRKHKKQLPSNKYTKALAIFITFNVICFSFLIFSGFLDTLWFHPMHH >gi|313656766|gb|GL545251.1| GENE 1254 1187106 - 1188614 1512 502 aa, chain - ## HITS:1 COG:SP2176 KEGG:ns NR:ns ## COG: SP2176 COG1020 # Protein_GI_number: 15901986 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 2 501 6 514 516 473 48.0 1e-133 MITNIIKRIDQIAINEPERIAYDYLGKTNTYGELKQRSDDWAHKIDSLKLEENAPIMIWG GQTFEMIACFLGCVKAGHAYIPIASYSNAERLTMIQEVSQSPLVIAIDELPNVDLGNLAV LKPDEVENGKFSIDEDKFVKDEENYYIIFTSGTTGKPKGVQISHKNLLSFVNWELADYNL PENPSFLAQAPYSFDLSVMSLYPALVSAGKLVILPHDVTENLGQLFTTLPKMKFNVWVST PSFAQMCFLDPTFNGNHHDDLTHFLFCGEELTHKCAETLRKKFPNSKIFNTYGPTEATVA VTQVEINDEILSKYDRLPIGKVKEDTEITIDESKGEKPGQGELIISGPSVSKGYLHNPEK TAAAFFNNDKKASYRTGDAGFFDGDMLFYRGRIDFQIKFNGYRIELEEINFYLSKNNLVR YGVVAPKYDKEHKVKQLIAQIELNEGVQDKYSEAEITKLIREDLAKNIMPYMIPQRFVYR DDMPISQNGKVDIKAVIKEVNA >gi|313656766|gb|GL545251.1| GENE 1255 1188630 - 1188791 129 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851640|ref|ZP_05557028.1| ## NR: gi|256851640|ref|ZP_05557028.1| predicted protein [Lactobacillus jensenii 27-2-CHN] predicted protein [Lactobacillus jensenii 115-3-CHN] conserved hypothetical protein [Lactobacillus jensenii JV-V16] predicted protein [Lactobacillus jensenii 27-2-CHN] predicted protein [Lactobacillus jensenii 115-3-CHN] conserved hypothetical protein [Lactobacillus jensenii JV-V16] # 1 53 9 61 61 83 94.0 5e-15 MKKIEETEKKPSKGKAIASFMLKTIFYFVVLLALIYLYEYSGIDSVHFIYNEF >gi|313656766|gb|GL545251.1| GENE 1256 1188884 - 1189183 177 99 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855454|ref|ZP_04645764.1| ## NR: gi|238855454|ref|ZP_04645764.1| hypothetical protein LACJE0001_1052 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_0816 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00717 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1052 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00717 [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_0816 [Lactobacillus jensenii 208-1] # 1 99 1 99 99 158 100.0 1e-37 MDKTVKKKVLFLTKLAGWLCFGPIAIFWELYLLGYQPKLFLLGMMAIIFAFALSLLLSDI TELCYNRSRMRRWVIFSVFFVSVIVAIPLYFAMKKLPKK >gi|313656766|gb|GL545251.1| GENE 1257 1189213 - 1190304 984 363 aa, chain - ## HITS:1 COG:no KEGG:LBA1927 NR:ns ## KEGG: LBA1927 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 21 362 35 378 378 426 62.0 1e-117 MATFYGAYYLYQRYEHYKTYETLLAKRPTLKKAQDGTSISAAWYKEKEFEKKLSKQYPWI YTLSFDTPALTYVGRNIPIPGLVSTKAYNFSKKKIDVATNMTPQGITFADKYMLITAYDG LHKHNSVIWVLNKQTGKYIKTLQIKGKPHLGGVAYDPVAKNIWITSSLNGESALASFSLE ELKSNKGKKPIKYNNQMNLPGISRASTVTYFDNQLFVGFFNMYEKGTVSGYTIARSGNFK GSITTDEIKASTGSAAWSTATGSTSMDKQIQGIAFYQDKIFLSQSYGSQNSKLYIFPVSA LNSLDEKNAERVIELPPYLEQITVENGQLICIFESGSKNYARSQIMIMDRTLSLNINALF SSY >gi|313656766|gb|GL545251.1| GENE 1258 1190457 - 1191986 1984 509 aa, chain - ## HITS:1 COG:L121483 KEGG:ns NR:ns ## COG: L121483 COG0281 # Protein_GI_number: 15672882 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Lactococcus lactis # 1 509 32 540 540 608 57.0 1e-174 MPSDVQTIEQQAKRVYDQYKIRPDGMQKRKFLMEVFNTNRTLFYYVLSHHIEELLPIVYD PVIAPAIEQYSEIFMLPQEAAFLSIDDTDEIEESLKNAADGRDIRLIVVTDAEGILGIGD WGANGVNISVGKLMIYTAAAGIDPSQVLPVSLDVGTNNETLLNDPLYLGLKHKRVTGEKY YDMVDKFVKSARKLFPEVYIHFEDFGRDNATKILDKYRNDIPVFNDDVQGTGIVCLAGVL GALEISGQKLTDQKFLTFGAGTAGMGIANLLFKELKLQGLSDEEARKHFYLVDKQGLLFE DTEGLTPEQKPFVRKRSEFENSEELTDLEAIIKAVKPSVMIGTSTTPGAFTEGAIKAMAA NTERPIIFPISNPTKLIEAMPNDLLKWTDGRALIATGIPVQATEYKGVNYEIGQANNALI YPGVGLGVLAAKAKLVSDEMISAAAHSLGGLVDTTKPGAAVLPPVKQIHTFTQTVAKAVC ETAIKQGLADDSVKDAEAAIRAIKWEAKY >gi|313656766|gb|GL545251.1| GENE 1259 1192588 - 1192749 122 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|260665177|ref|ZP_05866026.1| ## NR: gi|260665177|ref|ZP_05866026.1| malolactic regulator [Lactobacillus jensenii SJ-7A-US] malolactic regulator [Lactobacillus jensenii SJ-7A-US] # 1 47 138 184 295 92 100.0 9e-18 MLLAGKINLALLGLVNIHRSTDVKLNVLAKYPFKVIVSKDHPWAKKKVFTSMN >gi|313656766|gb|GL545251.1| GENE 1260 1192809 - 1193063 72 84 aa, chain + ## HITS:1 COG:no KEGG:LBA1074 NR:ns ## KEGG: LBA1074 # Name: lysR # Def: malolactic regulator # Organism: L.acidophilus # Pathway: not_defined # 1 81 208 288 304 86 49.0 3e-16 MQEQNKVTLKTIYRSPDVAIIKSLVAQNLGISVLTSLAIDNTRDLVALPLLDDNTPNFNV VIATRNNYLLSKKEEQLWNILALS >gi|313656766|gb|GL545251.1| GENE 1261 1193603 - 1193797 63 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFWQNLFTINLYYINHSKQVDLLYSHFLFHSFLLLQSRLKPYKVRLPSGPFLLSLIFNFN TWYY >gi|313656766|gb|GL545251.1| GENE 1262 1193859 - 1194326 456 155 aa, chain + ## HITS:1 COG:L110441 KEGG:ns NR:ns ## COG: L110441 COG0517 # Protein_GI_number: 15673261 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Lactococcus lactis # 1 155 1 152 153 93 35.0 2e-19 MFSPTIQHLVEQKSGAFLIPASKIAFVQEDAPLYHAFLILTKVKYAKIPVLNHKQQVVGL LSLSMITEQMLTESDISIDPLSNMKVSEVMQTKFTTINFVNTTMEAQLHLLIDNPFIPVV NDSGVFQGLLTRREWIKAFNYISHEIEKKYDITKK >gi|313656766|gb|GL545251.1| GENE 1263 1194457 - 1194993 566 178 aa, chain + ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 172 1 172 593 125 38.0 4e-29 MKHQWKLIVALILGVVGAILDFALHMPHLTAIIIDIAALLMALSMLREMVMDLKAGHWGV DILAIIAVISTVAVNEFWAAWMILVMLTGGESLEDYATSQADKELRSLLSNNPRLASKLV DGVVTEVKVDDLKIGDQVLVKPGSQVPVDGIILTGDSSFDESSLTGESVPVEKMSVTL >gi|313656766|gb|GL545251.1| GENE 1264 1194993 - 1196312 1299 439 aa, chain + ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 413 180 590 593 337 46.0 3e-92 MSGSINGDAAITMQVTKLAKDSEYQTIVALVQSSEAAPAKFVKMADRYAVPFTIISLIIG ISAWISSGDPTRFAQVMVVASPCPLLIAAPVALVSGMSSMSKNHIIIKSGTVLEKLSRAK TFAFDKTGTLTRNQLVIDRIVPETGIDKDELQILAASVEQASSHIIATSLVKATPKAKLH SVTDLEEVTGQGVRGKVAGKVVCVGKLSFVAPDKKLENINSTAIYISIDNKFAGYITFAD QIRPETPDTISSLRTQGAQHIMMLTGDNSKVAQKVAAIAGVDDVRSSLLPAEKIAAVKGI KAENRPVVMTGDGVNDAPSLMAADVGIAMGAKGATAASESADAVIMVNDLSKVSDAVAIA KHTMKVANIDVLTAISIVILIEIVAFTGIIPAMAGAILQEVVDLITICLALLAKTTPKIM RNKKTTNLQKKTELRKIFS >gi|313656766|gb|GL545251.1| GENE 1265 1196417 - 1197574 963 385 aa, chain + ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 381 1 376 379 244 44.0 2e-64 MHFIGELILILLITTLLGQLFTRLNLPAVIGQLLSGILLGPAILGLIKTNNTITLFSELG VIFLMFLAGLESDLELLKKYFKLSFSVAFIGVILPVIFMTIASQLFGMKFLEALFIGIVF AATSVSISVEVLHDANQLHTKAGTAILGAAVVDDILAVVVLSLFTSFSHEGGSNGLTSNL ALNLVIEAIYFVIVWMIFKFIAPYFMKYAEQIEVNYSVVIASLILALGLAWVADFTGLSA VVGAFFGGLAIRQTPQHKEVSSAVSAIGYSVFIPVFFADIGLSMTFSSFTQDLIFIIVMT VLALLSKFWAGKYTCELFGFNKIDANIVGAGMISRGEVALIVAQIGIAHKLFPEDIYSSL ILVIIVTTILSPFILNHYLKQKATV >gi|313656766|gb|GL545251.1| GENE 1266 1197647 - 1197844 293 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855462|ref|ZP_04645772.1| ## NR: gi|238855462|ref|ZP_04645772.1| integral membrane protein [Lactobacillus jensenii 269-3] putative membrane protein [Lactobacillus jensenii 208-1] integral membrane protein [Lactobacillus jensenii 269-3] putative membrane protein [Lactobacillus jensenii 208-1] # 1 64 1 64 363 108 98.0 9e-23 MSIVDHLVDKLNNNPAFVFTSVILVIISTLFLYLWIKEPRRLITGNIFALVVLIWGFWLS ILILN >gi|313656766|gb|GL545251.1| GENE 1267 1197988 - 1198470 441 160 aa, chain + ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 98 256 344 97 39.0 1e-20 MLTLLMGFALIGLWLYQKFTHWLHLPPYLAPILGLAPTIATYLIIVMLSFIINVFLYQFY PKKYCENYLIVLGAGLINGTKVSTLLANRINASINYAKKVKKKTGNWPKIIMSGGQGPDE ELSEAAAMAEYAIKAGIPREIIILENQSTTTLENMTFSKK >gi|313656766|gb|GL545251.1| GENE 1268 1198876 - 1199430 645 184 aa, chain + ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 3 180 4 186 318 169 56.0 2e-42 MKFKKIVVGALALLTATVATACSSNNSSKTSSSTGYTPKKVLNVQFVPSSQASTLEAKAK PLESLLKKELGIPVKVTVSTSNNALVEAMSSHQVDVGFLPPDAYVLAHKRKIADVLLQAE RYGYDEPSGKMNKTLMDKYRAMVVVKKGSKIKSWKDLKGKKIAVQESSSTSGYVYPVAEL YKKG >gi|313656766|gb|GL545251.1| GENE 1269 1199568 - 1199813 257 81 aa, chain + ## HITS:1 COG:BH0439 KEGG:ns NR:ns ## COG: BH0439 COG3221 # Protein_GI_number: 15613002 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Bacillus halodurans # 2 77 240 315 317 79 44.0 1e-15 MKDVVPIYFTKWIPNDTISVRSDMSQAYRTKLKKAFKNLMKTEKGKKIMSSIYSHVGYKD SKDSNFDVIRDYEKTIEKVTK >gi|313656766|gb|GL545251.1| GENE 1270 1200266 - 1201282 1204 338 aa, chain + ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 1 334 19 349 350 249 48.0 8e-66 MAACSNKSSSSNAKNADHSIALVTNNTGVDDHSFNQSAWEGLKRYGKAHDLLKGNGGYNY FESSSASDHIPNIEQAINAKYKTIVGVGYELGDAINTESKKHPKNNFIMIDNVINRKNVA SATFKSNDASYLAGYAAAYTTKTNVVGFVGGAHGVILNLFDAGFAKGVADAAKEQNKKIK IINAYVGDFSSVDKAKAIAKAMYANKADVIYQVAATAGEGVFQEAKDINTKKAANDKVWV IGVDSDQSSLGVYKDKDGKKSNFTLTSTIKGIGKAVEDIANKAYDGEFPGGKHFVYGLKG NGTYVVKGNMSDSAWAAVNKAKQNVIDGKVKVPTTPSN >gi|313656766|gb|GL545251.1| GENE 1271 1201335 - 1202141 919 268 aa, chain + ## HITS:1 COG:lin1425 KEGG:ns NR:ns ## COG: lin1425 COG1744 # Protein_GI_number: 16800493 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Listeria innocua # 15 249 16 250 357 190 44.0 3e-48 MNLKKVVIFGVATLSAFAMTACSNKTATNSNGKKNKGTVALITDGNGVNDHSFNESAWNG FLAYGKEHNLTKGSNGYQYFQTSGAAEFVPNLEQAAKNYDTIYGIGYQLKDAVSTVAKKY PKKNFAIVDDVIKGQKNVVSANFLSNQAAYLAGVTAAYETKTNVVGFIGGAHGDIVDLFD AGFTKGVNDTAKKLGKKITILNQYIGNFNSSDKAKSIAQTMYAKKADIVMHAAGGAGDGL FEEAKAINQTKKLVIKFGLSVLTLTNLT >gi|313656766|gb|GL545251.1| GENE 1272 1202611 - 1203708 1337 365 aa, chain + ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 10 361 3 349 350 273 49.0 4e-73 MLTLINAKLKKVMGTGLVIATTGLVLTACQGKGAKTSSSSKANHSIALITDSNGVDDHSF NQAAWSGFQAYGKEHGLSQGKGGYQYFQSSSASDYEPNFTQAVNAGYQTIYGVGYMLSDS VKTAAAKYPKKNFVIIDDVITGKKNVASATFKSNDSSYLAGVAAAYTTKTNTVGFIGGAK SSVIDLFEAGYIQGVKDTAKKLSKNITILDQYIGDFTSTDKAKSIAQSMYAKKADIVYQA AGSAGNGVFQEAKDLNSEKAVNDKVWVIGVDIDQTSQGKYTAKGGQKSNFTLTSVLKGLN FAVKDIANKAYDGKFPGGKHLVYGLQHDGVSLTKGNLNSKTWKAVQQARQDIINGKIKVA TSPSK >gi|313656766|gb|GL545251.1| GENE 1273 1203792 - 1204010 148 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 6 72 2 69 311 61 48 2e-15 MEKENTNIIEMRHIVKDFNGFKANNDINLTLRKGEILALLGENGAGKSTLMSILSGLLKP TSGEIYVRGKKL >gi|313656766|gb|GL545251.1| GENE 1274 1204049 - 1205326 179 425 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 175 396 5 213 305 73 26 3e-11 MVHQHFMLAKAFTVLENIILGHETKRGIKLDFKTARKQIMALSEKYGLAIDPDAKIANIT VAQQQRVEILKVLYRGADILIFDEPTAVLTPQEITEFIKIMKNLRNEGKSIILITHKLNE IRESADRVTVIRHGKSIGTVDVEGATDESLAEMMVGRHVNFKLPKKEAKVGKTILSVKDL MVNEDRGTLAVKGLTFDVHAGEILGLAGIDGNGQDELVEALTGLRHVKSGHFTIKGSDMT NKRPRKITELGVSHVPADRQKFGLILEMSLADNIALQTYYQKPYSNHGIINHKAITEHAK KLIKKFDVRTKDENLKAGELSGGNQQKAIIARELDRNSDLIIVFQPTRGLDVGAIEYIHK QLLAQRDAGKAVLLISYELDEIMQLSDRIIVLHNGQESGEVLPEKTSERELGLLMTGAHK KEGTN >gi|313656766|gb|GL545251.1| GENE 1275 1205409 - 1206470 1287 353 aa, chain + ## HITS:1 COG:L166804 KEGG:ns NR:ns ## COG: L166804 COG4603 # Protein_GI_number: 15673311 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Lactococcus lactis # 1 324 26 350 364 288 49.0 1e-77 MLLWSYNPILAYTSMFSSALGNMNGLGETIREATPLIFTAIGFSIASSAGFFNIGLSGQA QGGWLAAIWIALANPHMPKYILLPYAIIVGTLVGAAIAGIAGVLRAYFGTNEVIVTIMVN YIVLYSCQYLMQNVMNKNLRVSTDATKTVSNNGTLRLDWLSNIFGGSRINAGIFLALIAL VVFWFIMKKTVTGFEIKAVGLNPFASRYAGMSAKKNIIISMLLSGAFAGLGGVVQGLGTY QNYFTQTTSVDIGFDGMSVSLLGGGTALGILLAALLFSILKIGGLGMQTLAGIPYEIVSI VIAAIIFFVAINYVIGLLFEKKKKNYNQPETIAKISNNSVDGPAVKVGKGGEV >gi|313656766|gb|GL545251.1| GENE 1276 1206470 - 1207426 1070 318 aa, chain + ## HITS:1 COG:SP0848 KEGG:ns NR:ns ## COG: SP0848 COG1079 # Protein_GI_number: 15900735 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 318 1 318 318 404 69.0 1e-112 MNITTMLALIVSSTLVYSAPLIFTALGGAYSEHSGIVNVGLEGIMTIGAFSSIVFNLTFA STFKSATPWLGVIVAGICGLIFSLLHAVATVNWRADHIISGTVLNLMAPPLGVFLIKAMY DKGQTENISANFGYYNIPVLSNIPVIGDIFFKNTSAPAWVAIILSIVLWWVLYKTPFGLR LRSAGENPQAADTMGVNVYKMRYAGVLISGLLGGIGGGVFAQAISGNFSVSTIVGQGFMA LAAMIFGKWDPIGAMLSSLFFGFAQSLSIIGSQLPFISHVPSVYLQIAPYVITIIVLVAF FGKSVAPAADGQTYIKSK >gi|313656766|gb|GL545251.1| GENE 1277 1207525 - 1208244 765 239 aa, chain + ## HITS:1 COG:SPy1399 KEGG:ns NR:ns ## COG: SPy1399 COG0363 # Protein_GI_number: 15675320 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Streptococcus pyogenes M1 GAS # 1 234 1 234 234 296 64.0 3e-80 MKIIVTKDKITGAAKAFEIFSREIKAGAKVLGLATGSSPIELYQNMTNSDLNFSNLTSIN LDEYVGLDPHNNQSYHYFMNKHLFKDKPFRHSYLPNGLATDTVAEVKHYDQIIKENPIDI QLLGIGRNGHIAFNEPGTSFDSTTHEVELTQSTIEANARFFDNIDDVPKSAICMGIASIM SAKKIVLLAYGEKKRWAIKHMIEGPITEEMPASILQKHPDVTIICDEAAAQDLDKKYLN >gi|313656766|gb|GL545251.1| GENE 1278 1208400 - 1209050 810 216 aa, chain + ## HITS:1 COG:SPy0121 KEGG:ns NR:ns ## COG: SPy0121 COG1428 # Protein_GI_number: 15674338 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Streptococcus pyogenes M1 GAS # 3 213 2 210 213 224 55.0 8e-59 MTVIVLSGPIGAGKSSLTSILAEHLGSNAFYEDVSKNPVLPLYYKDMKRYTFLLNTYLLN KRLAQINEALSENNPNVVLDRSIYEDALFFKMNADSGIADPTECDIYVDLVHNMMEDVPG NPHKKPDLLIYINVSLDNMLSRIKRRGREFEQLETDPSLKEYYARLRNYYGPWYENYSES PKMVIDGDKYNFVDNEDDRKAVLELIDNKLKELGNL >gi|313656766|gb|GL545251.1| GENE 1279 1209075 - 1209746 810 223 aa, chain + ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 212 1 213 217 254 61.0 7e-68 MTVIVLSGPIGAGKSSLTSILSKYLGTQPFYESVDNNPVLPLFYKDPKKYAFLLQIFFLN TRFHSIKAALTDDNNVLDRSIYEDSLFFHMNADIGRATKEEVATYDELLDSMMKELEHMP KKHPDLLVHIDVSYETMIKRIQKRGREFEQLDYDPTLEDYYKRLLSYYEPWYENYDYSPK IKIDGDKLDFMASEKDRQEVLDTIVAKLKEMDKLPEDWTPSHN >gi|313656766|gb|GL545251.1| GENE 1280 1210246 - 1210467 135 73 aa, chain + ## HITS:1 COG:CAC0528 KEGG:ns NR:ns ## COG: CAC0528 COG0488 # Protein_GI_number: 15893818 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 67 104 170 492 73 52.0 9e-14 MQLNPDLLWQPFNTLSGGEQTMVLLALSFVSQNSFALIDEPTNHLDVANRRQVANYLKST KKVILLSVTIVTS >gi|313656766|gb|GL545251.1| GENE 1281 1210485 - 1211435 589 316 aa, chain + ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 2 314 211 510 513 209 38.0 5e-54 MLAIENNEIHLYQGNYASYEATKDKRDKYNQEKNLKLKSEIASLKKSARQIKSFSEKSEK NKNAAAHKNEIHADINKGFYGHKAAKIMKRSITMQQRVNKKITEKEGLLTNIEKAPDLLM NFSPNYHQTLLELQHLSLKIDNKPLFQDLNLIIKNHGIVALEGKNGSGKSTLLKFILNKS KAEASGKMILANGLKISYLPQTFSTYTGTLKEFSEKKHITYSDLLNNLKKMGFLRADFTL KIEDMSMGQQKRVALAKSLVEDADFYLWDEPANYLDVFNQDQLIKLLKQTKPAMILVEHD KYFIEQVADKKIKLTS >gi|313656766|gb|GL545251.1| GENE 1282 1211474 - 1212151 802 225 aa, chain - ## HITS:1 COG:Cj1130c KEGG:ns NR:ns ## COG: Cj1130c COG1132 # Protein_GI_number: 15792455 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Campylobacter jejuni # 38 209 369 544 564 110 37.0 2e-24 MAAVDTTVASDSLADFATVSGQDLTLNFPNGEQLRFPNFEVKQGEKVLLTGDSGAGKSTL FKLILDELTPSSGKIVFKDKNGKLLKPNLNQIGYIPQDPVLFPGTIQENITLFNDSLNEK AKAWADKVQLGTDLTKFPQGIKTMVDLDKDNLSGGQRQKVVLARTQVYESKLVLIDEGTS AIDSKNTQIILQNLLQSPATVIFIAHNLTPEMHKLFDRELKLTKA >gi|313656766|gb|GL545251.1| GENE 1283 1212235 - 1213059 605 274 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 54 242 48 241 535 66 23.0 6e-11 MTFLKLLKTNWLRAIIFIVLAIASASLVALGNSYLTSLGNSLLKYNVNIFITYILIFFLV GTLGEILGFIATYLFNKQVQAYLHQIRAKIVNKLFGQKEITKPTDVQNSLTNDLNMMNDN FLTPIYQIISSIFNIVFSIAIVFTYSWILVVLILILAVAMFVLPQLISKPLEKATVAVSE NNKEYLDTIEKWFKGIAILKRYNVKAKLFQVLAKSSDKLEKANVNRSKKVSQTSIFNDLV NGSAQVLIIFTAGLLVVTKNMPFGAFLVSVTFLE >gi|313656766|gb|GL545251.1| GENE 1284 1213056 - 1215269 1070 737 aa, chain - ## HITS:1 COG:SP1061 KEGG:ns NR:ns ## COG: SP1061 COG0515 # Protein_GI_number: 15900931 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Streptococcus pneumoniae TIGR4 # 42 407 50 386 448 80 26.0 8e-15 MWVPCDILPKSFDDEDKKYFGLSSDNYYVQFNFEDKEKIPLQGFKIHISATIHNYEGVIN HCFEFCKNQKINFKYIAKRKEIEKNLNGFVCSWAIGKVITIYPTTHRFKNILLSLHNDDF FKRQQGVTIFSDRRYKDSELIFYRFGRLIGPGKEIVNPVTKEIEYYDYDSPTYKIPSWIK EPFPNNIDDLQQATKLYKEYIPIAAVNHKGSGATFIAKQAKEKREIILKNAHPNFFCENI SIINLLKREKENLISLSDLDFIPKYVDDFFENKDYFLCEEKMEGIVASELRSLERFDFLN SKKRQDTLRFYRLLILDLLRKVDLLHKRKFFIGDISDNNLIINLNSGSVSFIDLAQSKYI NKREPDDKVFFRTMGYYDKRIDDLSLLNQDKAQLVYLLISLFSRANMFLKLDNSGKTTIK FFKKYSSFYKIPQAFVTLIFKLYRNPTQSLKPLINELENADLSIEYHFEEKYDIQEIERN LKQTIFINQLKLKRAKEAYSKKENDSKDLFIGTLEYGSYEITKKLKKKIYDEWRINKIRM EGAVKQYSDLKSDDVIATLFCVIVYIKPELVDIQEYLKSVFNKFLIVSGKGYYLKITEGS SQVSPYLSNGSAGLLLCLLEIRQVYNTELYDSLILKLVKTLKSSEIPQRGSIINGLAGIV IAIYKYKTIFKDTAVDSRIWELVDLIPYYLYKNDKLLYLIDDTFGDVSVKFKDGNKGIVK IISDLKKNNFFNQEENL >gi|313656766|gb|GL545251.1| GENE 1285 1215928 - 1217106 1093 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 1286 1217671 - 1217865 134 64 aa, chain - ## HITS:1 COG:no KEGG:lhv_1688 NR:ns ## KEGG: lhv_1688 # Name: not_defined # Def: ABC transporter # Organism: L.helveticus # Pathway: not_defined # 1 64 464 527 527 82 57.0 6e-15 MARTQVYESKLVLIDEGTSAIDSKNTQIILQNLLQSSATVIFIAHNLTPEMHKLFDRELK LTKA >gi|313656766|gb|GL545251.1| GENE 1287 1217924 - 1218664 498 246 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855316|ref|ZP_04645632.1| ## NR: gi|238855316|ref|ZP_04645632.1| hypothetical protein LACJE0001_1454 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative membrane protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1454 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] putative membrane protein [Lactobacillus jensenii 208-1] # 1 246 1 246 246 363 100.0 4e-99 MLVRSELFKLIKKKMYILPILIAFLPLVLAIIIYINPKDLHISGEFSSISFGLSMWQFLW AVFLPQLVVIYLTSESNKKEEENGQIIYEITKVKDNWKIIISKLIAQLVLILLFAVLFLL ISYISYVLLITKTSMAVSTIDSLDTKIMIQKFILSIIAMAMIACITYLFNTYFKSIVTII LMFAAHTLVNMLTGLLKVWYLLPSSILYKGDYKGDYQTLALQITILIVVGIGAVIWKKRA LDNMWN >gi|313656766|gb|GL545251.1| GENE 1288 1219282 - 1219530 233 82 aa, chain - ## HITS:1 COG:SP1062 KEGG:ns NR:ns ## COG: SP1062 COG1131 # Protein_GI_number: 15900932 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 74 1 73 305 59 39.0 2e-09 MSELLKVVDASKKYDTHILWQNVNVVINTGEIVGLVGKNGSGKTTFIKSILGVSKLNTGY VEYCGRKDYLTSAKLKRNWLFT >gi|313656766|gb|GL545251.1| GENE 1289 1219696 - 1220457 1068 253 aa, chain - ## HITS:1 COG:SP0715 KEGG:ns NR:ns ## COG: SP0715 COG1304 # Protein_GI_number: 15900612 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 2 215 152 364 378 222 53.0 5e-58 MVFDAVKSAGYKGIMLTVDALVSGYREANLRTNFTFPVPLDFFTRYVGAEGEGMSVAQMY ANSAQKIGPADVAKIKEMSGLPVFVKGVMNAEDAYMAIGAGADGIVVSNHGGREIDTAPA TIDMLPEIAAAVNGRVPIILDSGVRRGSHVFKALALGADLVGIGRPFLYGLALGGAKGVE SVINQINNEFKILMQLTGCKTVEDVKHADIRQINYTADNLPSNTDPSVRRAYPVTKENQM EGTQDAATGASKH >gi|313656766|gb|GL545251.1| GENE 1290 1220481 - 1220921 469 146 aa, chain - ## HITS:1 COG:SP0715 KEGG:ns NR:ns ## COG: SP0715 COG1304 # Protein_GI_number: 15900612 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 8 145 3 140 378 115 39.0 2e-26 MTVYYKGFPQSDRNEAIKMVNVDELEDRVRKVMPEAAYYYIASGSENEWTWRNNTAAFNH FQIVPRSLTNMDNPSTETQFMGMDLKTPIMICPIACHGIAHKDAEVATAQGAKAAGALFS SSTYANRSVEDIATATGDSPKFSNFI >gi|313656766|gb|GL545251.1| GENE 1291 1221146 - 1222453 1715 435 aa, chain + ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 7 434 4 433 434 395 55.0 1e-110 MNIIRNHFDLDKLGTNIKIEFLAGLTTFVSMSYILFVNPNVLGVSGMDKGAVFTATALAS ALGCFIMGLASNYPIATAPALGINAFFAYTACLGMHVKWQTALAAVFVASFIFILITMFK LREKIIDAIPVDLKHAISAGIGLFIAFLGLANAGLVEASKSTFVTVGSLKNPTVWIAIFG LFVTIILMIMGIPGAIFIGMVLAAVFGILTGQIKLPSAIISSAPSIAPTFGQAFKHIGDI NTMQMWVIVLTFLLVTFFDTTGTLIGLASQAGLMKDNKMPRVGRALAADSGAMMAGSILG TSPVGAYVESSAGIAVGGKSGLTAVFVGIFFLISMIFSPLLSVITTQVTAPALIIVGVLM AQNLAKVDWTKLEIAVPAFLIVIGMPLTYSISDGLSWGMITYPITMIAAKRGKEISPMMW VLFFIFIIFMWVLNA >gi|313656766|gb|GL545251.1| GENE 1292 1222549 - 1223859 1503 436 aa, chain + ## HITS:1 COG:BS_yebB KEGG:ns NR:ns ## COG: BS_yebB COG2252 # Protein_GI_number: 16077704 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus subtilis # 7 431 4 436 440 363 51.0 1e-100 MKNINRFFKLDEQGTSFKTELIASLTTFVSLSYMLFVVPNILTASGMGKGTVFTALVLAS ALGSIVMGLVANYPIALAPTLGSASFFAYTVCQGMKISWETALAGVLVASLLFVLITIFK LREIVINAIPQDLKYAISAGIGIFIAFIGLQNGKLIVNSDSSLVGLGSFSNPAVWIAVFG LLVTIVLMCLGVPGSIFIGMVVTAIFGILIGQIPLPKEFISMPPSIAPSFGQAVTHLGNV NTVQMAIVVITFLLVTFFDTAGTLIGMTQQAGLANKDGKIPRIGKALMSDSIGMIISSIF GVSPLGTVVESSSGIAMGGKTGLTAVFVGFWFLIAMFFSPLLTVIPTTVTAPALIIVGVL MASNLAKINWDKFEVALPAFLIVLGMPLTYSISDGLALGMITYPITMLASKRGKEVSPIM YGLFFIFIIYLWIINI >gi|313656766|gb|GL545251.1| GENE 1293 1223894 - 1225405 1246 503 aa, chain - ## HITS:1 COG:L113400 KEGG:ns NR:ns ## COG: L113400 COG0038 # Protein_GI_number: 15673646 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Lactococcus lactis # 1 484 6 491 512 328 40.0 2e-89 MDKQKIINLKLMAISLVVGIVAGLVVGAFRFAISQMQTFWLTLFKAAHANLWLLGVIILG FIIIGLITGYLVKQEPHAGGSGIPEVELQLQGKLHLNWWAILWRKFLGGVLAIGSGLFLG REGPSIQLGAAIGQGFGSKTSQTNRRVLIAAGAASGLSAAFGAPLGGTMFVLEEVFHNFS PRVWLNSLTGALSANFLVSNLFGQKPVLAIPYNHPFDVHLYGHLIVLGIILGLVARFYQW GLLNGKKIYDKLTFIPRFMHGLIPLFLLIPIAFIMPQIIGGGNELILSWHSINAIKLLSI IFIVRIIFSIISYDSGLPGGIFLPILTMGAILGELYGLIMVRLGMLPEGLVVNLVIFSMA GLFSGIVRSPFTAILLITEMVGSLLHLMPLAVLALVAYLVNDLLGGKPIYESLADRMETA SLEVYADNVDELTVTIFEDSKLADKEVKEIKWPEKTLVKLIHRGAHDIIPFGKTKLLAGD LVVLEVDSKCRSKVYDQIKDMQK >gi|313656766|gb|GL545251.1| GENE 1294 1225488 - 1226447 1149 319 aa, chain - ## HITS:1 COG:CAC0366 KEGG:ns NR:ns ## COG: CAC0366 COG0679 # Protein_GI_number: 15893657 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Clostridium acetobutylicum # 11 316 7 297 301 75 23.0 1e-13 MSTFISSISSVIVVILIIALGYTLRIKDWFADTFSGNISKLIMQIALPASIFVSVQKNLT KDSLGQLFEGMLIPALGVFLTYIIAFLLIAMFRIPAGRRGTFINTIANANTIFIGMPLNM ALFGNKAMQYFLIYYVINTVSTWAVGIFFMQGDAMPGKAKEQASFNWKKLLPMPLVGFIV AIVWLLTGLKLPDFATNTFTYVGNLVTPLSLIYIGIMLANIGIKNIKFDLQTILAVLGRL VIAPAVMILLIRVVAPAMGLHLAHLMANTFIIQSATPALAVLPILADQGNGDKEYATNVV ALTTLLFVIVVPALMLIAG >gi|313656766|gb|GL545251.1| GENE 1295 1226609 - 1227997 1770 462 aa, chain - ## HITS:1 COG:YPO1541 KEGG:ns NR:ns ## COG: YPO1541 COG0362 # Protein_GI_number: 16121814 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Yersinia pestis # 2 458 4 467 469 470 51.0 1e-132 MQEFGVIGLSVMGKNLALNIHSKGYSVAGFSIDKPEVDALAKYADDKLKPTYTWEEFVNS LEKPRKILIMIRAGKPVDLTLEKLTKLLEPGDIVIDGGNSNFHDTRRRFHELEKFGLHFI GMGVSGGEEGALHGPALMPGGDEAAFEKVRPILEAIAAKTPEGRPCVSYIGPEASGHYVK MVHNGIEYGIMQLFSEAYDMLRKACGLSNDEMSALFDKWNHEDLQCYLAEITAEVLKKDD DLTSDKVIDHILNEASYKGTGNWTLEDAIVLGAPISVIAEAVLARFMSKATTRAGKEISV DQSKISSDLPELIASALYLGQAVCYAQGFMQLKMAAKAYDWTLRYPGIAQNWEAGCIIRS KTLKDIEDAFEGNPEINNLFEAPFFAKMMQNRLPDLRRVVSVAAENGIPTPTLSAALNYL ESIFNPSLPANLIQGQRDYFGAHTYFRNDREGVFHTEWYDEK >gi|313656766|gb|GL545251.1| GENE 1296 1228096 - 1229904 2226 602 aa, chain - ## HITS:1 COG:L0199 KEGG:ns NR:ns ## COG: L0199 COG0028 # Protein_GI_number: 15674026 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Lactococcus lactis # 1 563 1 562 567 526 46.0 1e-149 MAKINGSDAMFKVLYDWHIDHIYGFPGGSFDSSMNAIHNWKDRIKFIEVRHEEAGALAAS AEYKLTGKVGVCFGSAGPGAAHLFNGLYDAKFDKTPMVAIVANVPEGRQDIDFFQAFDED KWFLNASVFCRQPKTAAQIPVVMDECIRQAYARKGPAVMIISKDLGWEKIEDNFRVNYDA RVEDNYAEPTKASVEEAVKLLKEAKNSVMYYGNGAKGCGEEIKEFAEKFKTPLLTSYLGK GIVEDEFPAYMGTIGRIGPKPANEIQGHTDLVVWVGNNSPFSVLWFPKDAKVIQIDVDPA KFGKRHKVDVSMLADAKKSLRALIDAGEARDESPLYKAAIADRQNWDEWLDSFKDSKESP VRQEPIWDVINKEAADNAVFAIDVGNVNMDHTRLLKMHGDQKWTTSGLHATMGYGAPAAL TAATVYPDREIWQLAGDGGFAMMCEELLTMARYNMHVLNVVFTNETLGYIQAEQEDESHQ PLSGVIIPDNDWAKVAEGMNVKGVTVRTKEEFEAAVKEWKKMDGPMLIDVKYTHDMHYST ELNTLDDPAFVAKYQAEPLKPFSYFAEKYGLDTDSATGASAHEEEEVEEEPEEDATSGAS AH >gi|313656766|gb|GL545251.1| GENE 1297 1230209 - 1230430 195 73 aa, chain - ## HITS:1 COG:lin2942 KEGG:ns NR:ns ## COG: lin2942 COG0445 # Protein_GI_number: 16802001 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Listeria innocua # 1 69 559 627 629 90 66.0 6e-19 MQKLRRLESKKIPEGIDYSKIAGLATEARQKFEKIRPESIAQAERISGVNPADIAILTVY IQQGKYSKIENED >gi|313656766|gb|GL545251.1| GENE 1298 1230508 - 1232112 1596 534 aa, chain - ## HITS:1 COG:BH4061 KEGG:ns NR:ns ## COG: BH4061 COG0445 # Protein_GI_number: 15616623 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Bacillus halodurans # 4 523 2 519 632 718 68.0 0 MLKTYSSNEYDVIVVGAGHAGCEAALASARMGQKTLLITISLDMVAFMPCNPSVGGPAKG TVVREIDALGGQMGKNIDATYIQMRILNTGKGPAVRALRAQADKVQYHETMKRTIEDTPN LTLRQATVDELIVEDGVCHGVITNTGAKYLAKSVVLTTGTSARGRIIIGELTYSSGPNNT IAAIKLSENLEKLGFKLRRFKTGTPPRVNGNTIDFSKTEEEPGDTEPRHFSFETKDEDYL KDQLSCWMTYTNETTHKIIRDNLDRAPMYTGVIEGVGPRYCPSIETKIVRFADKPRHQIF LEPEGKNTDEYYVGDFSTSMPEEVQQDMVHSIAGLENAEMMRPGYAIEYDVIEPWQLKHT LETKNIKNLFTAGQMNGTSGYEEAGGQGIVAGINAALRAQGKSGFTLGRDEAYIGVLIDD LVTKGTNEPYRLLTSRAEYRLLLRNDNADLRLTEYGHKLGLISDERYQEFEDKKATIKQT LAELYDITIHPNDEVQAYLKSIGQSPLNAGLKASAFLRRPGVTIVAIENYLVKS >gi|313656766|gb|GL545251.1| GENE 1299 1232122 - 1232580 452 152 aa, chain - ## HITS:1 COG:BS_thdF KEGG:ns NR:ns ## COG: BS_thdF COG0486 # Protein_GI_number: 16081154 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus subtilis # 1 152 307 459 459 131 46.0 4e-31 MLNASEDLTPEDEKLIDYTKDKKRIVVLNKSDLGMKLNKEDLAKKTNAEIVVTSILKEEN LDDLEEAISKLFFSGIHNSNNDVLVTNQRQAGLLEKAKTQLTDVIDAVDNDVPVDIAQID FTGAWDTLGEITGDSAPDELITQLFSQFCLGK >gi|313656766|gb|GL545251.1| GENE 1300 1232556 - 1233293 542 245 aa, chain - ## HITS:1 COG:SPy1071 KEGG:ns NR:ns ## COG: SPy1071 COG0486 # Protein_GI_number: 15675063 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 1 240 71 311 458 302 67.0 3e-82 MVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKHGARMAEAGEFTKRAFVNGRIDL TQAESVMDIVRAKTDKARQVAMNQLEGGLLVKIRTMRQEILDTLANIEVNIDYPEYDADQ VTAKQMQETSKSVIEKINRLLKTASEGKIMRSGLATAIVGRPNVGKSSLLNYLTQDDKAI VTDVAGTTRDTLEEYVSIKGVPLKLVDTAGIHHTEDKVEKIGVERSKKAIEQADLVYFCL TLVKT >gi|313656766|gb|GL545251.1| GENE 1301 1233368 - 1233502 140 44 aa, chain - ## HITS:1 COG:L0157 KEGG:ns NR:ns ## COG: L0157 COG0486 # Protein_GI_number: 15674224 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Lactococcus lactis # 1 43 1 43 455 60 69.0 1e-09 MPTLTEFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGKI >gi|313656766|gb|GL545251.1| GENE 1302 1233596 - 1234453 830 285 aa, chain - ## HITS:1 COG:lin2986 KEGG:ns NR:ns ## COG: lin2986 COG0706 # Protein_GI_number: 16802044 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Listeria innocua # 19 285 17 281 287 220 41.0 2e-57 MKDILTKKNVKRFIAFLAVVAIAVVLTGCANSTGHVSHTSGSWWDRYVIFYFSQFLLWLA DLLGKNYGWTIIVFTILVRLLLFPLNAISIKSTTKQQQLQPEIDKLRAKYPGNDAESRQL LNAETQKLYKEAGINPYLGCFPMLLQLPFMFALYQAIYSTKQLQDGTFLWMNLSKADPYY VMPILAAVFTFMSSYVAQMSAPESSSQSMTKAMMWITPLIVAVPAISFPTAITLYWVVSS IFSVIQTFILQNPFKYAREQEAKKQAEKERQRKIRRAYKKINRKK >gi|313656766|gb|GL545251.1| GENE 1303 1234455 - 1234823 276 122 aa, chain - ## HITS:1 COG:lin2987 KEGG:ns NR:ns ## COG: lin2987 COG0594 # Protein_GI_number: 16802045 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Listeria innocua # 1 114 1 113 119 97 45.0 4e-21 MKKSYRVKSEKDFQTVFNKGDSVANRAFVVYKLIRPENKHFRVGISVGKKVGHTAVVRNR LKRYIRATLTEVKDEVDARADFLVITRPYAREFTMAEVKKNLLHAMTLAKLIDQDSEEDE GI >gi|313656766|gb|GL545251.1| GENE 1304 1234876 - 1235016 234 46 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525161|ref|ZP_03955210.1| 50S ribosomal protein L34 [Lactobacillus jensenii JV-V16] # 1 46 1 46 46 94 100 1e-17 MTTKRTYQPKKRHRQRVHGFMKRMSTSNGRKVLARRRAKGRKVLSA >gi|313656766|gb|GL545251.1| GENE 1305 1235521 - 1235802 207 93 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0001 NR:ns ## KEGG: LDBND_0001 # Name: dnaA # Def: chromosomal replication initiator protein DnaA # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Two-component system [PATH:lde02020] # 1 85 15 101 454 115 62.0 7e-25 MRHEYNEVAYNAWFKNTKPVSYNKETNELVIAVKNPIAKGYWEANLSTKLIQTAYAYGNF EVLPIFEVDGDEPTERFRAPQPPKKYLNAVIVL >gi|313656766|gb|GL545251.1| GENE 1306 1235832 - 1236845 986 337 aa, chain + ## HITS:1 COG:lin0001 KEGG:ns NR:ns ## COG: lin0001 COG0593 # Protein_GI_number: 16799080 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Listeria innocua # 1 337 110 446 451 393 57.0 1e-109 MNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQMLG ERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGIQEEFF HTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRKKAE SEGLVIDDATLDYIASQVSTNIRELEGALVKVQAHATIEKADINVNLARDALTDLKLVQK SRGLQISKIQEVVANYFQTTVNELKGKKRVRQIVVPRQIAMYLSRNLTDASLPKIGQEFG GKDHTTVMHAYEKIEKDIRTDAEIKSAVYELKQLLDR >gi|313656766|gb|GL545251.1| GENE 1307 1237011 - 1238141 1125 376 aa, chain + ## HITS:1 COG:SA0002 KEGG:ns NR:ns ## COG: SA0002 COG0592 # Protein_GI_number: 15925707 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Staphylococcus aureus N315 # 1 376 2 377 377 316 46.0 5e-86 MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEDLILTGSDTDISIEIKIPVS EDLKVESTGSIVLPARFFNEIIKKLPGKDFNFEVKEGLQTQISSENSEFTINGLDANNYP RLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVFNQAKIKAVATDSHRL SQRVIDLENGPQVETDLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNISFYSRL LEGTYPDTDRLLPTNSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTQNGVAQLE GDSPEIGTVEEKPLAKQLTGQNLEISFNPDYLQAALRASITDTVIMNFTEALRPFTVVPG KEDVDFIQLITPVRTY >gi|313656766|gb|GL545251.1| GENE 1308 1238350 - 1238565 170 71 aa, chain + ## HITS:1 COG:BS_yaaA KEGG:ns NR:ns ## COG: BS_yaaA COG2501 # Protein_GI_number: 16077071 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 9 65 7 63 71 64 56.0 4e-11 MSKIKVFKIKGEFITLGQFLKEETYVGSGGQAKCFLAETPVILNGQKENRRGKKLHVGDE VEVQGQIYKFE >gi|313656766|gb|GL545251.1| GENE 1309 1238568 - 1238855 310 95 aa, chain + ## HITS:1 COG:L0261 KEGG:ns NR:ns ## COG: L0261 COG1195 # Protein_GI_number: 15673957 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Lactococcus lactis # 1 92 1 92 358 104 56.0 4e-23 MYLKQLKLQNWRNFEELETGFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKEL IRFGQKAAILSGHVVKSQVETDLQVRINAKGKKLG >gi|313656766|gb|GL545251.1| GENE 1310 1238969 - 1239229 189 86 aa, chain + ## HITS:1 COG:SA0004 KEGG:ns NR:ns ## COG: SA0004 COG1195 # Protein_GI_number: 15925709 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Staphylococcus aureus N315 # 1 76 135 210 370 60 43.0 6e-10 MDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDKVFLEVLSDQLAGLAAEIIS RRLKYLTYLSEYAKKLMQLLVMKKSS >gi|313656766|gb|GL545251.1| GENE 1311 1239256 - 1239447 62 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855509|ref|ZP_04645814.1| ## NR: gi|238855509|ref|ZP_04645814.1| DNA replication and repair protein RecF [Lactobacillus jensenii 269-3] DNA replication and repair protein RecF [Lactobacillus jensenii 208-1] DNA replication and repair protein RecF [Lactobacillus jensenii 269-3] DNA replication and repair protein RecF [Lactobacillus jensenii 208-1] # 1 48 231 278 374 97 97.0 2e-19 MTSEQITSESIYHEVLACFKKNEAGEIRTGTTLSGPHRDDLKFLLDKKMLIYMPHKGNKE QSH >gi|313656766|gb|GL545251.1| GENE 1312 1239456 - 1239656 129 66 aa, chain + ## HITS:1 COG:lin0005 KEGG:ns NR:ns ## COG: lin0005 COG1195 # Protein_GI_number: 16799084 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Listeria innocua # 1 54 296 349 370 72 68.0 1e-13 MAEIQLIHQITGEYPALLLDDVMSELDHTRQSALLNYIHGKTQTFITTTDLEGISWEIVK NPRFLD >gi|313656766|gb|GL545251.1| GENE 1313 1239691 - 1241646 2588 651 aa, chain + ## HITS:1 COG:lin0006 KEGG:ns NR:ns ## COG: lin0006 COG0187 # Protein_GI_number: 16799085 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 1 650 1 645 646 822 67.0 0 MADDKMKDVKEYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNG IDECLAGFATKIEVTVEEDGSVTVQDDGRGIPVDIQKKTGRPAVETVYTVLHAGGKFGGG GYKVSGGLHGVGASVVNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGT IVHFYPDPDIFTETIVFDDKILKKRIQELAFLNKGLKLTFTDKRKNSAETDVYHYEGGIK EYVAFLDEKEEKLFDTPVYVEGDYDGINVEVALQYTTGYKTTMMTFANNIHTYEGGMHEA GFKTALTRVINDYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNS DARAAVDKAFSEAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANL PGKLADNTSNDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILA NQEIRTLFTALGTGFGADFDVKKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKA GYVYIARPPLYQVKQGKIIKYLDSDEELHDYLGSLQPSPKPTVQRYKGLGEMSADQLWET TMDPENRRLDRVDPKYAEDADAVFEMLMGNEVGPRRDFITKNAKYVENLDA >gi|313656766|gb|GL545251.1| GENE 1314 1241658 - 1244135 3119 825 aa, chain + ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 6 807 2 804 822 1004 63.0 0 MDNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVT PDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPA AMRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGM TTNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKG NVVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRH GMRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQE DVVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSQSSDIAKATLISRFELDDK QAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADYKDILAKPERIDHIIYTELLDIQKRF GDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNGYIKRMPVSEFRTQNRGGRGIKGMGV QDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIPEYSRIAKGLPIINLLQLDKGEKIQ AMINVPEGHEEGNLFFITKMGVVKRTSVEEFSNIRNSGLIALTLRDGDELSNVLTTDGKQ NIIIGTHLGYAASFKESDVRVMGRSAAGVRGINLRENDYVIGSEVLKPGAEVLVISENGY GKRTAVSEYPIKGRGGKGILTTKVGKKNGRLAGMTVVDGTTDIMLITTDGIMIRFKTEDV SQTGRATMGVRLIKLGEGDSVASLTAVPNDDDDSEKRDENSKSEE >gi|313656766|gb|GL545251.1| GENE 1315 1244340 - 1244633 500 97 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855512|ref|ZP_04645817.1| ribosomal protein S6 [Lactobacillus jensenii 269-3] # 1 97 1 97 97 197 100 2e-48 MTTKYEVTYIIKPDIDDEAKKAVVDKYDKIIADNGATMVESKDWGKRRFAYEINKYREGT YHIMTFTAEDAKAVDEFGRLSRIDNQVLRSMTVKLDK >gi|313656766|gb|GL545251.1| GENE 1316 1244670 - 1245185 745 171 aa, chain + ## HITS:1 COG:BH4049 KEGG:ns NR:ns ## COG: BH4049 COG0629 # Protein_GI_number: 15616611 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Bacillus halodurans # 1 171 1 168 168 159 53.0 2e-39 MINRVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYANAQGERGADFINCVIWRKAAEN FCNFTNKGSLVGIDGRIQTRSYDNKDGQRVYVTEVIVDNFSLLESRKDREARSQNSGYAP QNNGSSYAGNSNQNTNFQPNNSAPNTNNAAPQDPFADSGSTIDISDDDLPF >gi|313656766|gb|GL545251.1| GENE 1317 1245209 - 1245445 396 78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227525170|ref|ZP_03955219.1| 30S ribosomal protein S18 [Lactobacillus jensenii JV-V16] # 1 78 1 78 78 157 100 2e-36 MPQQRRGGRRHRKVDFIAANHIDYVDYKDVDLLKRFISERGKILPRRVTGTSAKNQRKLT IAIKRARIMGLLPFVAED >gi|313656766|gb|GL545251.1| GENE 1318 1245578 - 1247080 466 500 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|194246575|ref|YP_002004214.1| 50S ribosomal protein L9 [Candidatus Phytoplasma mali] # 48 498 62 515 837 184 27 2e-88 MKDFFRKLELPEFIKDSRLSSSVLIVIFLSLFSAVVGVMISPFFGLAMVLIFVLIVAFTV YGAYILAGNANNFAANLSYRIKRSEQEAMIKMPLGILLYDSDHHIQWVNPYLQMYLDDED ILGRSISSVDPELGKIFETILSSKKTSQNQLVKWGNRQFEIIVQDNLGVIYLLDITRYAQ IEEKYEAERLAIGLIFIDNYDELSQGMHDQELALMSSYVQNTLSEYAVKFHSYLKRIDED HFLLLAHMQDLKKLEGDKFSVLDKVRLETSRNNTPLTLSVGLAYGSDSLNEVADQAQSNL DLALGRGGDQVVLREPGKEARFFGGKSNPMEKRTRVRARMVSQALQEIFKDADQIFVVGH QRPDMDAIGGGIGIVKIARAHGVKAHVVLDTNHTNYDVGRLVARLEKDKDLDLFISPEDA LAQATDQSLLVMADHSKYSITYDPKLYEKLKNRLVIIDHHRRGEEFPENPMLIYIEPYAS STCELVTEMIEYQPQRVSSY >gi|313656766|gb|GL545251.1| GENE 1319 1247077 - 1247595 287 172 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|85057286|ref|YP_456202.1| exopolyphosphatase-related protein [Aster yellows witches'-broom phytoplasma AYWB] # 1 172 527 697 849 115 36 6e-90 MTDLEATAMLAGITVDSKEFSLRTGTRTFDAASYLRSIGADSAIVSDLLKEDIESFTQKA KLVASLKMYKDDIALLLGPNDKIIDPIVTAQAADMALSLEHVDASFAVTRRKKDTIGISA RSMGDINVQVIMEKLGGGGHLSNAATQLKDITIDEAKEKLEKAIEDYLEENE >gi|313656766|gb|GL545251.1| GENE 1320 1247615 - 1247830 291 71 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227525172|ref|ZP_03955221.1| 50S ribosomal protein L9 [Lactobacillus jensenii JV-V16] # 1 69 1 69 150 116 82 5e-63 MKVIFVQDVRGRGKRGEVKNVPDGYAQNYLIKRGLAKEANKGNLNTLKRVEANEKQPMKL KRLKQLKLKTT >gi|313656766|gb|GL545251.1| GENE 1321 1247820 - 1248065 402 81 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855516|ref|ZP_04645821.1| ribosomal protein L9 [Lactobacillus jensenii 269-3] # 1 81 70 150 150 159 100 2e-65 KQLENDNTVVQFKSKAGSDGRLFGSLSGKKIVEGLEKQFSIKIDKRKLELPEPVKALGYT NVRVKLFKGVESTIRVHITEE >gi|313656766|gb|GL545251.1| GENE 1322 1248081 - 1249448 1597 455 aa, chain + ## HITS:1 COG:SP2203 KEGG:ns NR:ns ## COG: SP2203 COG0305 # Protein_GI_number: 15902010 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Streptococcus pneumoniae TIGR4 # 10 449 11 445 450 459 57.0 1e-129 MDNVVSPQIPHDSEAEKAVLGAIFIDPEAIADAEAIVTVDDFYERANRILFAAMKDLADR DEAIDPLTIRDELAKRKQLEDIGGIAYISDVAVATPTSAHVTYYAQIVHRKSQLRRLIAA SQKIIQNAMEGSDDVANILDDAEKQIMDVSSDTNSAGFRNIKEVVQKALDEINAATAADT DVTGLSTGFVNLDKMTTGLHEDELIILAARPGVGKTSFAMNVAQYAGLHDHKTVAVFSLE MSGEQLVQRMLASEGLIDSMHLRTGQLNNEEWNKLVVAAGALATASIFIDDTPGIKMSEI RAKARKLAKEDGNLGLIVIDYLQLIEGPKSESRQQEVSAISRQLKKLAKELHVPVIALSQ LSRSVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRDEDGGEDNNQQGDDDNGEV EVIIEKNRSGSRGTVKLMFSKPYNRFSNLDYAHDE >gi|313656766|gb|GL545251.1| GENE 1323 1249484 - 1249729 289 81 aa, chain - ## HITS:1 COG:no KEGG:LBA0019 NR:ns ## KEGG: LBA0019 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 78 304 382 408 70 44.0 3e-11 MDITDMNVFTEHRIRGTWTLGKVVMGMDPEVRQVATEMIKLIYQSAKNNYLPFSEVDFST VPKSNDSSKAPIFFESYNFKD >gi|313656766|gb|GL545251.1| GENE 1324 1249837 - 1250631 904 264 aa, chain - ## HITS:1 COG:no KEGG:lhv_0025 NR:ns ## KEGG: lhv_0025 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 262 1 264 409 317 55.0 3e-85 MAGPLDYLRWRGDLSFKQRQYNSVDGAILASIAYLPFDESIVGHSLKEACERILALYSGS LDLHRKTETRLLVKSPRFADLKILDWTSRLEANPTPLQFAALTLQLDENTILISFRGTDS SVVGWNEDMIMNYSYQIYGQTVARDYLEAMADKFKDCKIYITGHSKGGHYAIHSLADARY DIQDRVLNSLSFDGPGYRSVFTESAGFKRAIDKMRTYVPEGSVFGIMLDHPERTLVVKSV YPMMHQHTPLNWSVGRDSFVLSLD >gi|313656766|gb|GL545251.1| GENE 1325 1250722 - 1251429 942 235 aa, chain - ## HITS:1 COG:CAC3658 KEGG:ns NR:ns ## COG: CAC3658 COG1285 # Protein_GI_number: 15896891 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Clostridium acetobutylicum # 12 228 7 227 229 172 40.0 4e-43 MTILAIASITTQVEWLIRIIVAALCGAVIGYERAIQRKSAGVRTHIVVAVASALFMIVSK YGFYDLLTTNEIALDPSRIAAQIVTGISFIGAGTILVRREQISGLTTAAGVWATSAIGMA VGSGLYTIGVLATIFIFFIQMLFHDDSIISRVIIHVRFNVQIVCVNTPNILNEIKTELEN NHVESIAIKILDVDDDQIVFNADGIINNKIDENNIIMHLRKYPDIKRIIYTRGGK >gi|313656766|gb|GL545251.1| GENE 1326 1251570 - 1252748 1093 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 1327 1253146 - 1253433 384 95 aa, chain - ## HITS:1 COG:SMc02477 KEGG:ns NR:ns ## COG: SMc02477 COG3093 # Protein_GI_number: 15966811 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Sinorhizobium meliloti # 10 82 3 75 88 71 43.0 3e-13 MNKIPLPTIGEILREEFLEPLNLSAYAVAKGIDVPTSRIQDLLHDRRKITVDTSVRLGRF FGLSDRYFLNLQNDIDIRKAEETYNYDKIKKYQLA >gi|313656766|gb|GL545251.1| GENE 1328 1253447 - 1253731 159 94 aa, chain - ## HITS:1 COG:SMc02476 KEGG:ns NR:ns ## COG: SMc02476 COG3549 # Protein_GI_number: 15966812 # Func_class: R General function prediction only # Function: Plasmid maintenance system killer protein # Organism: Sinorhizobium meliloti # 1 94 1 92 92 95 53.0 2e-20 MIKQFADKETEKIYKGNFSKKLPQNIQHIALRKLIMIDNAENINDLRVPPANHLEQLSGN RTGQYSIRINDQYRICFTFVSPNQVYDVEIVDYH >gi|313656766|gb|GL545251.1| GENE 1329 1254391 - 1255056 474 221 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855814|ref|ZP_04646106.1| ## NR: gi|238855814|ref|ZP_04646106.1| hypothetical protein LACJE0001_1600 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_0046 [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_1600 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_0046 [Lactobacillus jensenii 208-1] # 1 219 1 219 381 415 100.0 1e-114 MIVGIVLLVVSGLLSSLFYSKKKYIWFLLCLIFALCCFLGFTAAITNILLFQVIMGVTTL GTLGIFAYLVLLNKKGKNPRYNKTIFAITIFALLFAVMGISSPKDFMLHTDEVIAKDKGN HTNSKYFEVLTSKDNWDTENKMFSIDTNSKGKVSLKLKGLRDCTVTIKNSPDFDKDTDQS VKIRKIELRAGETKTLSFVMKNSDYVEIELVIVDPDGKKLM >gi|313656766|gb|GL545251.1| GENE 1330 1255071 - 1255535 527 154 aa, chain + ## HITS:1 COG:no KEGG:LSL_0943 NR:ns ## KEGG: LSL_0943 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 51 145 235 326 331 63 44.0 2e-09 MEDNSSDSDSDTDSDSDTNDSDDDSSSESSSNKTDSKDTDDESEDDDYEKVSYDDLARHP KKLLNKNIEISGTVNQVVKDKGIQMVYLRMDDDPDQIVIVAVYNEFKPSGRILENDNLTV KGSASGTQSYTTVLGNDKEVPFVIAEKDVIDNGK >gi|313656766|gb|GL545251.1| GENE 1331 1255709 - 1257148 1640 479 aa, chain + ## HITS:1 COG:SP0303 KEGG:ns NR:ns ## COG: SP0303 COG2723 # Protein_GI_number: 15900236 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 4 479 2 478 478 654 67.0 0 MFETKMPNGFLWGGAVAAHQLEGAWNVDGKGPSVADVMTVGSTEKDREFTGKVLPGENYP NHEGIDFYHHYKEDIKLFAEMGFKCFRTSIAWTRIFPNGDEEEPNEAGLKFYDDLFDECH KYGIEPVITLHHFEIPLHLVNKYGGWENRKLIDFFTRFAKVCFKRYKSKVKYWMTFNEID NQASFNNPFLMCTNSGIVFKEGQNREAAMYQAAHYELVASALAVKIGHEINPDFKIGCMI NYASIYPATCKPSDCLLAQRVADRRYWFSDVHVNGEYPEELEMYLKRKGYRQDITEEDRQ VLREGTVDYIGFSYYASMTVASDKVDADSLTDLDEAKVHNEYLPTTAWHWEIDPEGLRYG LNWLTDRYHKPLFIVENGMGAYDKVEADGSIHDEYRIDYLRKHISEMEKAVALDGVNLMG YTPWGCIDLVSAGTGQMDKRYGFIYVDKNDKGEGTLARSRKDSFFWYQKVIKSNGAELD >gi|313656766|gb|GL545251.1| GENE 1332 1257165 - 1257641 326 158 aa, chain + ## HITS:1 COG:no KEGG:GY4MC1_1444 NR:ns ## KEGG: GY4MC1_1444 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y4.1MC1 # Pathway: not_defined # 5 154 11 162 167 84 35.0 1e-15 MAKAESKKEFKEKSLYYNRYFSLRYLTAGYFFVNFWWLIALAMGGSEVVLLPLALLLLCV PAIWEQKQKFDQREDNELPQTKHYFFFQVAINIFLGICYFTPAFSYFYPFITTSAFSIVF MLLLLGLAIGVWSLHHIIQIEKNEDRFFRRYEAYGQQK >gi|313656766|gb|GL545251.1| GENE 1333 1257625 - 1258473 763 282 aa, chain + ## HITS:1 COG:Cgl2568 KEGG:ns NR:ns ## COG: Cgl2568 COG0561 # Protein_GI_number: 19553818 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Corynebacterium glutamicum # 8 282 3 269 271 213 44.0 5e-55 MANKSNQKVIFLDIDGTLCDYNGTIPDSAKQAIWLARSNNHLVFLNTGRSKGEMDADLLN IGFDGMICGNGNFVEVNQKVILHQPLPETVEVEIVNWLKEHHSEFFLESNNGLFASEHFR EKGLPVVRAYVQGKGQTDVSHMTVDTAFPAMQYGESIFRDDVNKISFILTDEVQPEIVKK QFPHLEFGTWGGRDEQPLFGDLRPKGITKSNAIKYLLQYLNLSLRDTIAFGDAQVDIPMF ELCGIGVCMENGGPNAKKNADLVTDAVMDNGLYHAFEKLSLI >gi|313656766|gb|GL545251.1| GENE 1334 1258529 - 1259260 370 243 aa, chain - ## HITS:1 COG:BS_yydK KEGG:ns NR:ns ## COG: BS_yydK COG2188 # Protein_GI_number: 16081065 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 229 1 220 236 101 29.0 2e-21 MRKYMEIARNISEKIFYKEFKKQLPSENELIDQYHVSRNTIRNAISILANHGIIKRVQGS GYFINQQLINNDELMLMASKDGIHPTRPQSYEDKCTILKKLKTKILSFKLLQANKQNAET LGCELGADIYYIERLRYFNNELFCLEKTYYLKKLVPYLDEKICQGSIFEFIQKQYKIEVN DADEFIKMSYTNETDSKKLSIPVNTPNVQITEINYLRNNVAFNYSIINYFTSDISFYNHV TCL >gi|313656766|gb|GL545251.1| GENE 1335 1259406 - 1259723 531 105 aa, chain + ## HITS:1 COG:SPy1324 KEGG:ns NR:ns ## COG: SPy1324 COG1440 # Protein_GI_number: 15675267 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 4 105 2 102 103 90 49.0 9e-19 MAEKTIMLCCAAGMSTSMLVARMQDAAKADGEDVEIFACPAAEADDKLSQENVSAILLGP QVRYMLDSFKQKVSDKNIPVDVIDMQAYGMMDGEKVLKQGLSLIK >gi|313656766|gb|GL545251.1| GENE 1336 1259735 - 1260121 469 128 aa, chain + ## HITS:1 COG:lin1830 KEGG:ns NR:ns ## COG: lin1830 COG1447 # Protein_GI_number: 16800897 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 28 121 5 98 100 86 57.0 1e-17 MDKDPKQVADLVNDAAKKEKEANELSMQQTMMLIMNAGNAKAFAKEAIDAAKKGDFDKAE AKIKEANEALIDAHNTQTGMLTEEARGNHAKLTLLVVHAQDHLMTAITYIDLAQEIVEVY KQMAELKN >gi|313656766|gb|GL545251.1| GENE 1337 1260150 - 1260920 1054 256 aa, chain + ## HITS:1 COG:SP0310 KEGG:ns NR:ns ## COG: SP0310 COG1455 # Protein_GI_number: 15900243 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 2 255 3 257 448 240 51.0 2e-63 MENNKIIKFMNEHLLGPMGKMANFRFVRAIMAAGLASIPFTIVGSMMLVLNVIPMAFPQL QGIWNASFVHFTPLYMTINYASMGALALYFNIVLGYEYTKIIATEEKINMTPMSGALLSM FAFFMTLPELVVKSGTVEVVSKAIKDGTGTVSGFSVSSSGLDRLGTSGIFVGIIMAVLAV KLYQLAVKHNWVIKMPPQVPTGVANAFTALIPAFLVGLVVIIIEGALIFAGTDIFNVIAL PFSFVTNLTNTWLGIW >gi|313656766|gb|GL545251.1| GENE 1338 1260950 - 1261237 391 95 aa, chain + ## HITS:1 COG:SP0310 KEGG:ns NR:ns ## COG: SP0310 COG1455 # Protein_GI_number: 15900243 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 1 86 270 355 448 99 60.0 1e-21 MGIHGANIIGAFYTPIALANFAANYKGAHYVFAGEFMNMFVIIGGSGATLGIVIWMAFRA RSAQLKVLSRTAIVPAFFNINEPIVLVAQLYTILS >gi|313656766|gb|GL545251.1| GENE 1339 1261237 - 1261509 283 90 aa, chain + ## HITS:1 COG:SP0310 KEGG:ns NR:ns ## COG: SP0310 COG1455 # Protein_GI_number: 15900243 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 3 82 368 446 448 84 53.0 4e-17 MFPFILAPMVTATTSYWAIKLGIVGKVIAQMPWPSPLGIGAFIGTGGDWKAAVLAIINVF LAFLVWYPFMKMYDNKLLAQEKVNQASEQK >gi|313656766|gb|GL545251.1| GENE 1340 1261584 - 1262084 330 166 aa, chain + ## HITS:1 COG:FN0786 KEGG:ns NR:ns ## COG: FN0786 COG2963 # Protein_GI_number: 19704121 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 161 1 168 169 88 39.0 5e-18 MSKLTKKDKLNIYKEWTIENKRSTYLSKKYGIGSVSIKYLVSLIHKHGMDILDKPHTYYS AQFKLEAINRVLVNHEAAYSVSLELGLKSQGMLINWIRSYKENGYNVVIKRKGRRTREQR TREIEERKRRIASPEFKAYCRERIYKKLDALVQKRKTNQNRNSTSC >gi|313656766|gb|GL545251.1| GENE 1341 1261900 - 1262973 922 357 aa, chain + ## HITS:1 COG:SPy0198 KEGG:ns NR:ns ## COG: SPy0198 COG2801 # Protein_GI_number: 15674400 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 89 355 8 267 268 240 52.0 2e-63 MSLSRGKDDEPVNKELEKLKKENEELRRQNLKLTVENAFIKNWMPWFKREKPTKTEIAQA VRELRLELGLGVKTILSILNDLNNDLPGLSRSNYYDILKREDQDEIRHHSLIKRIKEIYF ELKARYRAPGYRVIADHLHNEGFKVNRKTVYRLMRKLNLIGYRMKRRRRYDSFEGEIEGR IKPNLIKRNFFAIRPNMKWYTDITEFNLRGQKLYLSPIIDGCGRDIVAYNISRSPNLQQV MTMLDDAFKANHSLNGLVFHSDRGWQYQHKSYQYELARRGIEQSMSRKGCSPDDGLMEGF FGILKREMFYGKEDNYANLNELEQAIKDYIHFYNYERTKTKLKGLTPIQYRNQSLVA >gi|313656766|gb|GL545251.1| GENE 1342 1263076 - 1263888 499 270 aa, chain + ## HITS:1 COG:no KEGG:lhv_0259 NR:ns ## KEGG: lhv_0259 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 31 260 173 396 402 67 26.0 6e-10 MNLRIIFDKLRSFFSWSKARPARKVTGLITYEKLESFIGDFKQLTEKRQNALIGHWLAKE GWVFSFENLAEGRKILAGCRQRYNSDLNKYLEKVYKRNNYQVLWQQLDDLITNSESDKKY SSITDYHDALILINKYLKEDKTAGQVILPALFGMVEYALVVKLGFLHIRKYGIRDKCEEY RERIKKQVFDPNDTRKLEIYCVLTCLSHWWDTRYQQFVANKNKIGLGRHTVMHGRVNPHR FTLIEVAKIISLLHAIVNLPTFELYFQEEL >gi|313656766|gb|GL545251.1| GENE 1343 1263995 - 1264801 591 268 aa, chain + ## HITS:1 COG:no KEGG:lhv_0044 NR:ns ## KEGG: lhv_0044 # Name: not_defined # Def: putative esterase # Organism: L.helveticus # Pathway: not_defined # 1 189 1 188 190 186 50.0 1e-45 MKLLLTGDSIVARHEGLSEPHINAYLKENFSDIEIVNTAVPGINSRYLLAHLNELVLKQV KADYLIILIGTNDCAFHKKIEEEEFWTNLNKVAKKILNKYEAKQVILVSPPAVDEEKQRV RDNETVEKYANWVQRVANDYGMHYLNLFHKMNTDDHELEEICHGLRNDGLHFGKIGYQIF GDGLIDEIRPKKWHQKIIDKSQTATYTVTKLPLRILICNIRDCLYIVIKRMELIEERILD NPNWGLSLNKIIILGGLGLIWLFISVFR >gi|313656766|gb|GL545251.1| GENE 1344 1264877 - 1265329 406 150 aa, chain + ## HITS:1 COG:BS_ywnA KEGG:ns NR:ns ## COG: BS_ywnA COG1959 # Protein_GI_number: 16080716 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus subtilis # 1 135 2 133 133 105 42.0 2e-23 MDTKFAVALHILTMISEETSKLSSQTLANSVGTNASYIRKILALLKNSGIITSHQGKTGY QLTRLPEQISLLTIYLAIQESDHIHLFAVHQNANPKCPVGKYIESAMRPLFADIEVQLAE ALRRQTLKDVIDNLYYISQQKKTQDEKKSI >gi|313656766|gb|GL545251.1| GENE 1345 1265356 - 1266354 932 332 aa, chain + ## HITS:1 COG:AGpA656 KEGG:ns NR:ns ## COG: AGpA656 COG0604 # Protein_GI_number: 16119675 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 16 332 40 357 359 216 37.0 7e-56 MLAALHTQYDKNNIKLKISEIAKPKISSQQVLIKVKAAGVNPVDNMISRGEVKLIIPYQL PQVAGNELVGTIEKVGEQVTRFKVGDRVFARLPIEAIGAFAEYIAVDEVALAQVPEYLTD VEAAAIPLTALTTMQALEFMNIQPGQTIFISGGTGSVGAMAIPIAKAKGLTVITNGNSNN AKSVLALGANRFIDYKTEDYTQTLNNVDYVLDTLGGVETKRQMMIMKQGGQLVSLRAMPN GEFAKRMNLPKWKQVLFKIAGHKFDSMAAKRKVGYHFVYVTSNGAQLQKAADILEASKIR PCIDMVYPFERVNDALAKVDSGHSHGKTVLKF >gi|313656766|gb|GL545251.1| GENE 1346 1266663 - 1267160 568 165 aa, chain + ## HITS:1 COG:HP0106 KEGG:ns NR:ns ## COG: HP0106 COG0626 # Protein_GI_number: 15644736 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Helicobacter pylori 26695 # 1 162 1 162 380 201 56.0 6e-52 MKFNSKLIHGGISEDEATGAVSIPVYRASTYHKPFLSSNLKWEYSRSGNPTRAALESLMA DLENGADAFAFSSGSAAIHTVFSLFSAGDEIIIGKDVYGGTFRLANQVMKRFGLKFTVVD TRKLDEVSAAIKPGVKAIYLETPTNPLLEVSDLAEIAKIAQEKMY >gi|313656766|gb|GL545251.1| GENE 1347 1267160 - 1267804 634 214 aa, chain + ## HITS:1 COG:L0181 KEGG:ns NR:ns ## COG: L0181 COG0626 # Protein_GI_number: 15672763 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Lactococcus lactis # 2 211 169 378 380 262 61.0 4e-70 MIVDNTFASPYNQKPLDLGADIVVHSGTKYLGGHSDLVAGIAVVKDEKIAEKLAFLQNSI GSVLSPDDSWLLMRGIKTLGARMRIHEENAQAVIAYLLQSKYVKKVLYPGLKTNPSFEIA KKQMKGFGAMISFELADEYQVADFVNKLRMISLAESLGGIESLIEVPAVMTHGSIPREIR LKNGISDGLIRLSVGIEDKEDIIADLDQAFKSLD >gi|313656766|gb|GL545251.1| GENE 1348 1267873 - 1268151 207 92 aa, chain + ## HITS:1 COG:SP1845 KEGG:ns NR:ns ## COG: SP1845 COG0708 # Protein_GI_number: 15901674 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pneumoniae TIGR4 # 1 64 1 64 275 77 59.0 7e-15 MLLISWNIDSLNAALTSDSARAQKTRHVLTQIAEKEPDILAIQETKLRATGPTKNMLKFY RKCFRIMIMCGVHLKNQLEKVMLERCTYTKSP >gi|313656766|gb|GL545251.1| GENE 1349 1268058 - 1268699 838 213 aa, chain + ## HITS:1 COG:SP1845 KEGG:ns NR:ns ## COG: SP1845 COG0708 # Protein_GI_number: 15901674 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pneumoniae TIGR4 # 1 213 63 275 275 327 71.0 1e-89 MFPDYDYVWRSSEEPARKGYAGTMYLYKKSLKPEVSYPKIGAPDTMDFEGRIITLEFPEY FVTQVYTPNAGGELKRLSDRQGWDKKYIEYLQELDVQKPVLASGDYNVAHEEIDLKHPEN NHHSAGFTDEERADFTELLAAGFTDSFRKIHGNIPEVYSWWAQRIRTAKANNSGWRIDYW LTSNRIADKIKKSEMMDTGERADHCPIVLEIEL >gi|313656766|gb|GL545251.1| GENE 1350 1268745 - 1271555 1974 936 aa, chain + ## HITS:1 COG:Cgl1126_2 KEGG:ns NR:ns ## COG: Cgl1126_2 COG1061 # Protein_GI_number: 19552376 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Corynebacterium glutamicum # 200 934 30 784 789 551 40.0 1e-156 MEKVLKDAILNGLYDTKYPGQVNLTPQLLSNSNEKIWLSLRQELITANSFTWAVAFISED MLVPLKQVLADTKISGTIITGSYLQFNSPKVFTELMKIPNLTVKISNKPGFHAKGFLFNH VDYQTAIIGSANFTRSAMLANSEWCLKVSSTQNAGLTQQLQAELNDLTKTATPLTTEWID DYAQTWAKPQAQAPIITQEIKPNLMQKEAIKNLFNIINQGQKRALVVSATGTGKTYLAAF AVKKYQPKRFLYLVHRAQIAKKAMSSFQKVIGGRKSDYGLLSGKHHDYDAKYLFATIQTL SQEDLLKSLDPAEFDFVLIDEAHRTAAPSYQRVLNHLEPKFLLGMTATPERMDKENVFEI FDYNLAYEIRLQDALQEGMLTPFHYVGVEDYEVNGQSIDETTNLAYLTASKRVDYLLKEI DYYGYCGQTVHGLVFCSRQAEAKELAQEFSKRGHQAISLTNENTESERQQAVNDLESGRI EYIITVDLFNEGIDIPCLNQVIMLRNTQSSIVFIQQLGRGLRKYPGKDYVTVIDFIGNYQ NNYLIPLALTGDRSASIDRAKREAQLPSFVGLSTINFSRIASERILASLAKIKLDGLKQL REAYHELKDKLGKRPLLYDFYRFGSVSPLVFAQNTSLASYATFLKKMGEELTLTQFESQV LSFLTKELLPGKRIHELLLLNLLLKHEKVTSEQFETELKQHHAYCSRDLLASVQNFLMLD FFDVKAGKTTKKAQYGNTALIERLNLFDFTFSQEIKKALEDVDFKTLFTDLIKTGLALNQ AFDNSQEFTLYQPYDRKDACHLLNWPLDVSAPMYGYRVGEKDCPIFIIYNKTEEKRSSIY QNDFSDGRSLHWYTRSPRHLDSDEVQRLLSGKVKLHLFVKKSDAASREFFYLGEAKIMHA QEEKIGPKQKATVGMDLLLQTPLTSDMYQMLFTSEK >gi|313656766|gb|GL545251.1| GENE 1351 1271605 - 1271901 419 98 aa, chain + ## HITS:1 COG:L66233 KEGG:ns NR:ns ## COG: L66233 COG0656 # Protein_GI_number: 15672250 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 6 77 3 74 281 105 69.0 2e-23 MALRGLNDTYTLNNGVKIPVVGFGTWQTPDGEVAEKSVLAALNSGYRHIDTAAAYGNEES VGRAIKKSGIRRDELLLLLSFGILIMAMKILKKQLILA >gi|313656766|gb|GL545251.1| GENE 1352 1271901 - 1272461 649 186 aa, chain + ## HITS:1 COG:L66233 KEGG:ns NR:ns ## COG: L66233 COG0656 # Protein_GI_number: 15672250 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 2 186 97 281 281 195 52.0 5e-50 MKLGLDYLDLYLIHWPNPVAMRDNWAELNSESWQAMEEAQKAGKIRAIGVSNFRKHHLDA LLENADVIPAVNQIYLNPSDLESDVRKENDKHQILSEAYSPLGTGDLLGNELVNKLAQEH GKSPAQILIRWSLEHGFLPLPKSVHEEYIKANGQVFDFSLSADEMKLLDGLEGKGNSALD PDQANF >gi|313656766|gb|GL545251.1| GENE 1353 1272543 - 1273256 559 237 aa, chain + ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 1 214 1 171 345 93 33.0 3e-19 MKRSELKFNAKEKLHNNWAWGALMSLMLMLIAYLVSRGIMFLMFGSAGIFGFMMAERVLT EDPGFVISLFVSFAGFVYLLSFGISLITGMFDKGVQIGYLHLVDGKKENNVFKNIFLAFR GGRTYNYFVNVLLTSIFTGLWSLLFIIPGIVKSYSYAMTFYILEDMHKAGKEVGVTEAIT KSRQMMKGHKFQLFVLDLSFIGWGILATLALGIGWLWLVPYIQTTKAEFYRKLAANN >gi|313656766|gb|GL545251.1| GENE 1354 1273362 - 1273688 522 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855795|ref|ZP_04646087.1| ## NR: gi|238855795|ref|ZP_04646087.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 108 1 108 108 136 100.0 5e-31 MKNTKFFAGIVMVLMSLYMLFQAVTAHLATNAMIAGIIFLVAGIAYVATKDMDNLTGDIA GLVLNLIGWFMTMSIPTVSLFGVFALIMAVVLFGLTLMLNSGNSALAK >gi|313656766|gb|GL545251.1| GENE 1355 1273830 - 1274537 741 235 aa, chain + ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 2 230 3 230 235 127 33.0 1e-29 MRYQQLIFDVDDTLISLASTESFALQSLFNAHNWRLSNNLRRQYHAYNQSLWRKLEQGEL TYQELSEQCFRVFLKENLDIDVDGQKTMDEYRSYFGEAHQLLPGVEDTLRFAKSEGYKLA VLSNGEQFMQTHRLKLAGIYDYFDLIVTSEEAGYQKPDERIFDYFFSRSGISPDKTLFFG DGLQSDILGAERYGFGSVWYNHHHRKNTLNLHPLFEVENYPQFVKLMQADFKKKY >gi|313656766|gb|GL545251.1| GENE 1356 1274662 - 1275324 811 220 aa, chain - ## HITS:1 COG:lin1131 KEGG:ns NR:ns ## COG: lin1131 COG0580 # Protein_GI_number: 16800200 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 1 195 1 194 234 187 54.0 1e-47 MHSFIGEFVGTMVLLVLGIGIGAGSNLKGSIAKGASWHHITMTWGLAITFAVYVAGSLGS KAHLNPAVTLSFATFGLFPWKDVLPYITAQFLGAFAGAAIIAIHYYPHFKATKNEDEGNH VGIFTTGAAIDNPIFNFLSEVIATFIFVLILLNLGDFTTGLKPLILGLLIMVIGQAFGET TGFALNPARDWGPRLLILYCQFQIKVTHIGVMHGFLCLVH >gi|313656766|gb|GL545251.1| GENE 1357 1275675 - 1276676 1494 333 aa, chain - ## HITS:1 COG:SA2346 KEGG:ns NR:ns ## COG: SA2346 COG1052 # Protein_GI_number: 15928138 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 315 1 316 332 221 38.0 2e-57 MTKIFAYAIRKDEEPFLNEWKEAHKDVEVDYTDQLLTPETAKLAKGADGVVVYQQLDYTA ETLQALADAGVTKMSLRNVGVDNIDMDKAKELGFEITNVPVYSPNAIAEHAAIQAARVLR QDKVTDMKMAKRDLRWAPNIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIAFDIFHN PELEKKGYYVDSLDELYKKADVISLHVPDVPANVHMINDDSIKEMKDGVVIVNVSRGPLV DTDAVIRGLDSGKVFGFVMDTYEGEVGVFNKDWQGKEFPDARLADLIDRPNVLVTPHTAF YTTHAVRNMVVKAFDNNYAMVEGKEPETPVKLG >gi|313656766|gb|GL545251.1| GENE 1358 1276844 - 1277086 379 80 aa, chain - ## HITS:1 COG:SP0175 KEGG:ns NR:ns ## COG: SP0175 COG0054 # Protein_GI_number: 15900112 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Streptococcus pneumoniae TIGR4 # 1 74 76 149 155 78 51.0 3e-15 MTLGAVIKGETDHYAMIINNVTSAIMQLNLKGQIPITFGMLTTENIEQALQRAGLKAGNE GSATAQSLLEMMSLNEQITK >gi|313656766|gb|GL545251.1| GENE 1359 1277083 - 1277307 240 74 aa, chain - ## HITS:1 COG:BS_ribH KEGG:ns NR:ns ## COG: BS_ribH COG0054 # Protein_GI_number: 16079382 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Bacillus subtilis # 2 64 3 65 154 67 52.0 9e-12 MIKQGNFINVHGKVAIVVSRFNETITKNLVDGATSTLKKFGIKDEDIDIYWVPGAFEIGF TAKKSLKPISILEL >gi|313656766|gb|GL545251.1| GENE 1360 1277325 - 1278500 1306 391 aa, chain - ## HITS:1 COG:BS_ribA_2 KEGG:ns NR:ns ## COG: BS_ribA_2 COG0807 # Protein_GI_number: 16079383 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Bacillus subtilis # 209 388 10 196 198 215 56.0 1e-55 MDVKKIQAAVQWMKQGGLVIVADDEDRESEGDIIGLGSKVTPQKINFITQTARGLLCTSI GRSIAERLNLTPMAQNNTDPYGTAFTISVDYKTTTTGISAFDRAATIKALADPTTKAEDF FRPGHTFPLVAKDGGVLDRNGHTEASITLARLAGEAEVAYICEVMDGDGHMARRPRLKEI AAEYNLPFLTIAELQEYVKNPASKNNQFVDLPTVYGNFKIKAYVGENLALVKGPIDPNKP ILVRLHSECMTGDVFGSKRCDCGEQLHKAMQKIGHEGGILIYLRQEGRGIGLTNKLKAYA LQDQGRDTYEANKILGFEPDERKYNIAKEILTDLGIKKIRLLTNNPDKVTQLTKYGIEVT ERVPLEIPANEINKFYLQTKRDKFHHLIMGK >gi|313656766|gb|GL545251.1| GENE 1361 1278503 - 1279108 605 201 aa, chain - ## HITS:1 COG:BH1555 KEGG:ns NR:ns ## COG: BH1555 COG0307 # Protein_GI_number: 15614118 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Bacillus halodurans # 1 192 1 191 215 150 41.0 2e-36 MFSGLVTGNAHIANIKKDEHTITMVIKTVPANLKDLKIGDSIAVNGCCLTVESFTETTFT VTMMPQTFKKTIFKDSKIGDQVNMERSLQLKSRLEGHIVTGHIDDVIFLVKKQQNENAVE LFFKLPKRLISQVVAQGSIAINGTSLTVMDIHDDIFSVGLIPHTQEETNLAKLNVGDQVN VETDILGKYVAKNLVNFQGAQ >gi|313656766|gb|GL545251.1| GENE 1362 1279101 - 1280180 893 359 aa, chain - ## HITS:1 COG:L0163_1 KEGG:ns NR:ns ## COG: L0163_1 COG0117 # Protein_GI_number: 15672975 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine deaminase # Organism: Lactococcus lactis # 9 151 1 142 142 140 47.0 3e-33 MQKGSDLMMKTDEDFMGLALTEASKGRYHTWTNPMVGAVVVKDNQVLATGYHHRYGDVHA ERDAISKLTPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHSLVTGK GIKKLKAHNISVTTGVLAQEAKKLNQHYVYFYEHNLPYVTLKQALSLDHKCSYPNKRIQI TGNAASQRVHQERADYQAIMVGSSTALIDNPTLLTSIKQDHPPIRLVIDRRGRLLNQQLT LFSDNRAPTWIFTQNPELAKTSYPPHVKVFLLDQGTLTEVLQILAQNKVQSVYVEGGPAL MKSFVEEKLAQELITYFSPTFLGSNALDGFEITENLKLIQPNYQVLDKDIRISGRIDYV >gi|313656766|gb|GL545251.1| GENE 1363 1280551 - 1281729 1093 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 1364 1282032 - 1283273 1488 413 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 2 413 37 447 449 269 40.0 9e-72 MAGHNWFIATLGFLITGVVLPLLSILAIALTRADGVYDIGLPLGSAFAVTFMALIHATIG PFFGTPRTATVSFTVGVAPFVPKDHQQLALLIYSALFFGAAFWISYNEKDILNRLGKVLN PIFLVLLFLVFFVAMINPLGSANAGYATSAYATSGNAFLNGFLEGYNTMDALAGLAFGVT VVAAIRQLGKKEDKSVAIVTARSGMLGMGAVAFIYFFLILIGAMSLGKFTMSADGGVAFS QIVQHYAGYVGQAVLATLMTVTCLTTAVGLVAAFGQDFHKYFPRFSYRVWMVLSAFASFL IANVGLNEIIAWSTPFLMFLYPLSMVLIVLSIMTPVIKKSRIVYFTTVVFTVIPAFLDFV NALPDVARNTSLVQSLITVRNTLPLSSVGVSWLLPAIIGLVLGLVIYFTKQKR >gi|313656766|gb|GL545251.1| GENE 1365 1283314 - 1284237 795 307 aa, chain - ## HITS:1 COG:CAC3361 KEGG:ns NR:ns ## COG: CAC3361 COG0583 # Protein_GI_number: 15896604 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 8 254 6 246 312 103 31.0 5e-22 MHDPETVLHYLDTLLEESNFTKAARALYISQPYLTQTIKRLEEKLGIKLINRTVPFTLTE AGTIYYKYLESSVASKRKLHSQLIKYENPKLEVIRISVLESLGCFLIPAILPDFLKSHPN IKVQLSEVSPRTSENLLLAEEVDCYLGQTPKALSKGIKPYINGNEKYYIVIPANSKFYQA GKFILEPDAFDLKTLLQQPFLLSNGSSAIRHQVDGLFQKYKIKPNIILESQNILTTTGLA INGMGLTISSASILKRYKETPLNLLPISPDLLSIDYFIAVKQGRTLTPGIQDLITAFMTS NLSPEIK >gi|313656766|gb|GL545251.1| GENE 1366 1284402 - 1286192 2188 596 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 51 596 1 481 484 214 33.0 3e-55 MPMEVTLSEEKIEAIKVDAKGETKGVADEVFHRLPNQIVKNQTLNVDAISGATISSHGVI DGVAEAIDEAGGDSEEWKKRAKPATEKNSDQELTADVVIIGAGGAGLAAAARSIQLGKKV IVLEKFPQIGGNTTRAGGPMNAAEPEWQKDFKCLPGEKETLKELMNTPVDKIDAEYQADF KKLQKQIKTYLDSGADYLFDSGLLHEIQTYLGGKRHDLNGREIHGKYELVTTLVNNVLDS VKWLEQLGVKFEHEVTMPVGALWRRGHKPVEPMGYAFIHVLGDWVKAHGGQILTETKAEK LLLEDGKVSGVIASNRGSKVTVHAKTTVLTAGGFGANTKMCQKYNTYWPEIQDDMATTNS PAITGDGIKLGQSVGAALTGMGFIQLMPVSDPVTGELFTGLQTPPENYIMVNQKGARFVN EYAERDTLARAAIKEGGLFYLIADDKIKETAYNTTQESIDAQVKAGTLYRADTLEELAKK AGMDPATLVDSIKKYNSYVDAGHDPEFGKSVFNLKCEKAPFYATPRKPAIHHTMGGLVID TKTHVLNDKNEIIKGLYSAGENAGGLHAGNRLGGNSLADIFTFGRIAAETIAEEEK >gi|313656766|gb|GL545251.1| GENE 1367 1286243 - 1286464 374 73 aa, chain - ## HITS:1 COG:CAP0144 KEGG:ns NR:ns ## COG: CAP0144 COG4892 # Protein_GI_number: 15004847 # Func_class: R General function prediction only # Function: Predicted heme/steroid binding protein # Organism: Clostridium acetobutylicum # 2 71 64 134 143 61 40.0 5e-10 MKEFTREELAQFDGKNSNKAYVAVKGVVYDVTGNAHWQAGEHHGVLAGKDVTEALSHSPH GDSVLAGLEKLVL >gi|313656766|gb|GL545251.1| GENE 1368 1286901 - 1287743 857 280 aa, chain + ## HITS:1 COG:YPO2805 KEGG:ns NR:ns ## COG: YPO2805 COG0656 # Protein_GI_number: 16123003 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Yersinia pestis # 1 258 15 272 297 303 56.0 2e-82 MDYITLNDGNKMPQLGFGVFQVPDLSQAQQAVSDAIDVGYRLFDTAAAYGNEEAVGQAIK NSNINRDEFFITSKLWVDHFTYEKAQEGIDDSLKKLGLDYMDLYLLHQPYGDTYGAWRAL EEAQKAGKIKSIGVSNFYPDQLKNLELMSNVKPAINQIEVSPWYQRNAEVKYHQDEKIQV EAWAPFVEGKHDIFTNPVLAEIGEKYGKKNGQVILRWLLQRGIVTIPKSVHKNRMAENFD VFDFKLSDEEMNLIASLDKKKVNSLIIVTQQQLSQFLVQV >gi|313656766|gb|GL545251.1| GENE 1369 1287823 - 1288686 545 287 aa, chain - ## HITS:1 COG:SPy0898 KEGG:ns NR:ns ## COG: SPy0898 COG0583 # Protein_GI_number: 15674920 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 8 191 6 204 301 75 27.0 1e-13 MLISNELLEKLVAFKEYGTLAKAAEKLLVTQPTLTRSMQQLEDELGVKLFNRTVNRISLT ATGELAAKRAKQLLENNELFVQSIQNFSAQTSSLNVSSTIPAPLIWLKLIAERDFKNSPL LLTDKEIKNNLMAFQSDIVISTKEIFSDNISSIFLGKEHLKVLIDENSPLAQKKSVTFKD LKDCSFLVYDQIGIWKNIIEKNIPSANFMYQSSLENLDTISSSTNFIVFRSNLTIEKNYH NSNDAKRVLVPIEDEAASIECYGNYLNYNEDRVMPFIKDFIAKWPKE >gi|313656766|gb|GL545251.1| GENE 1370 1288808 - 1289323 489 171 aa, chain + ## HITS:1 COG:ECs1906 KEGG:ns NR:ns ## COG: ECs1906 COG0702 # Protein_GI_number: 15831160 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 161 9 172 220 123 42.0 1e-28 MTNVLIIGASGNVGSHVRQTLLAKTDAKLTLFCRSANKLQVNPEREKAIAGDAASVEDLK QAMANQDFIFAALSGNLPELAAAITQAMKFTGVKRIAFISSMGIYNEIPASVGSNGNLRV NGMLMPYRQAADIVENSGLTYTIIRPGWFTQGPVNYELTKKVNHLVAMMCL >gi|313656766|gb|GL545251.1| GENE 1371 1289424 - 1290725 1427 433 aa, chain + ## HITS:1 COG:L127813 KEGG:ns NR:ns ## COG: L127813 COG0477 # Protein_GI_number: 15673857 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 3 427 4 434 442 370 50.0 1e-102 MKKDKFGMVLVIALFAYFLILMDNSIVFTSSVEIGQALNLSETALAWVSNAYTLTFGSFL LLSGKLLDLFGRKKVFMIGLTIFGLASLVIGLTNNSGLLIAARAIQGIGSSIVAPTTLAL IMDEYEGKMRAKAISYYGAMAGVGSTFGLVLGGALTSYLSWRAGFLVNVPFTLILLILTG RYVKKSDGHAIKVDYVGALISVLGLTSLIYALSVNNNPIFMITGIILLIIFIFFEKKQAN PVLPLSLFANKNRLAGYLARLFFMMAMLPYWFLLPQYMHAKYGFSAIENGLAFLPVTIFT FLTSFTLPRLNEKFSHKQIAISGSIVLTIGLFLTAILNLKYGYWLSVAFPMVLSGAGQGL IMAPLTSLGIEDAPQEVAGSASGLTNTMHQLGGPIGLSILVAQGANFQFNLGMMGIFIVI AILILMFLTKKVD >gi|313656766|gb|GL545251.1| GENE 1372 1290998 - 1291711 1022 237 aa, chain + ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 237 4 237 237 328 73.0 4e-90 MPKKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLMLPKKD GLEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANLRRR DIVQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMT REHLLQTAWGYDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYVKDPNEE >gi|313656766|gb|GL545251.1| GENE 1373 1291731 - 1292108 283 125 aa, chain + ## HITS:1 COG:no KEGG:lhv_0096 NR:ns ## KEGG: lhv_0096 # Name: not_defined # Def: putative histidine kinase # Organism: L.helveticus # Pathway: Two-component system [PATH:lhe02020] # 10 122 6 118 618 150 70.0 2e-35 MAFFSYGKNEKIKSILNSLNTKIAVVFMLMILATIEIIGAYFTRQLEQSTIESFQTSIQI PTIITNSLATQLSKNTKKADEQLSQIVSNYNNSAISEIIVVDNKDVIRAVSNLNDKSRVG QRKML >gi|313656766|gb|GL545251.1| GENE 1374 1292177 - 1293256 947 359 aa, chain + ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 17 340 164 482 610 308 49.0 1e-83 MVQITPLTVGTGANSTLGAIYVRANMQGVFDNLRNISYMFLTASFAASILSAILALFISR AITKPIEEMRMQALQVADGDYSGQVKIYSNDELGQLAEAFNTLSIRVERSQEQSESERRR LDSVLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKEAVNKPITKILGLADDVSAQELI GNQQEMMITVNEGTPDEMILHASFSLIRRVTGFVSGAVCVLHDVTEQQKNENEQRQFVSN VSHELRTPLTSLRAYIEALNDGAWKDPEIAPQFLEVTQEETERMIRMINDLLSLSRMDRG VAKMDLEWVNFNDFLSHVLNRFDMIVKKMQKKVRRVKRNIQLREKLQIKIYGLKLILIK >gi|313656766|gb|GL545251.1| GENE 1375 1293277 - 1293609 445 110 aa, chain + ## HITS:1 COG:SP1226 KEGG:ns NR:ns ## COG: SP1226 COG5002 # Protein_GI_number: 15901088 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 99 336 434 449 152 71.0 1e-37 MNNAIKYSPDGGVITVGLSQSQNQIILSISDQGLGIPKKDLNKIFDRFYRVDKARSREQG GTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFYISLPFEPMSEEDDWDEV >gi|313656766|gb|GL545251.1| GENE 1376 1293599 - 1293964 198 121 aa, chain + ## HITS:1 COG:no KEGG:LA2_00515 NR:ns ## KEGG: LA2_00515 # Name: not_defined # Def: hypothetical protein # Organism: L.amylovorus # Pathway: not_defined # 1 103 1 109 451 85 47.0 8e-16 MKSKNRAIDIALHIATGLVIITSIVLWIFILTSDQRFSGLNQSTDTDTTHVKNSKSIKDA YLPTEVFGYRNNQLYQLYDSDKNLPLVFSKEFNNAKIERIKPIFITKKTIRNFWPIRLTC S >gi|313656766|gb|GL545251.1| GENE 1377 1293937 - 1294371 150 144 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_00385 NR:ns ## KEGG: LAC30SC_00385 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 6 129 125 247 451 115 51.0 6e-25 MANKAYLQLTYPDQITFGIFSSNVSKYKNSEFNRIFIAQKDGKFKLYAGNDLNHRIYEVS LKNGNFDKLLKYAQKSESKTAVSLIRLSEGYEVSYKNDLTVNVYSYLISNPSDSYFVSRL LGTSGVSSKLPVMLQLILPVYIIT >gi|313656766|gb|GL545251.1| GENE 1378 1294470 - 1294949 373 159 aa, chain + ## HITS:1 COG:no KEGG:LBA0080 NR:ns ## KEGG: LBA0080 # Name: yycH # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 3 150 300 447 452 167 51.0 1e-40 MTYVHKLGLVEQDLRFFDAEGSSVVYTNYIEGYPVFIKTQGPQIQIRYSTDNITIKFNST NLQIPVPFDGRTVKIPKTSTVIKTLQAKGIAKSDIQRMTIGFELVRDSAHDSLVDLTPTY YIKIYNHWLSLSEWQNANLAKYRTSTTSSAKGLNVTREE >gi|313656766|gb|GL545251.1| GENE 1379 1294953 - 1295756 622 267 aa, chain + ## HITS:1 COG:lin0318 KEGG:ns NR:ns ## COG: lin0318 COG4853 # Protein_GI_number: 16799395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 266 1 260 279 68 23.0 1e-11 MDHRRIEWLFFVIFLAISIFLGIELWRTPIQLSGTSSDPNTTTNISDEIKADNIDLPSLS EDTASGYYLAASDQNYFKNIKNLRNVNTSYSSTDKTFYAVLQRAVNLSTDNTKALEQVKA FKNNSHYVPFGKQYVYVDELSDDSNYVFVQNSKFGKVYDASAELIIKVQKHQIVSYQQGY LGELSAVRELQSTISSWKAIQNLYIYRELTNNSKVIWIKLEYSKLTEVRNSIILLPTWVV EIENKTTKTSSIKRVNAFTGQVIQSSM >gi|313656766|gb|GL545251.1| GENE 1380 1295850 - 1296587 637 245 aa, chain + ## HITS:1 COG:L582 KEGG:ns NR:ns ## COG: L582 COG1235 # Protein_GI_number: 15672377 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Lactococcus lactis # 1 229 32 259 270 214 48.0 2e-55 MDAGLSGKKIKDLLAQVGVDINDIDMAFLSHDHSDHSKGLGVLMRRYPQINAFANSGTWK YLIDENKVGKLPVEQINTIEPGQVKSFDDLEIQAFATSHDAAQPQYYVFSSAGKRITFLT DTGYVSEKVRDVIKDSDAYMLEFNYDTELLRNGSYSWQLKKRIMSDYGHLSNEQASEVFE DVLTAKTKHIFLTHRSQHNNTLRLAHDTLVNNLARDEIDFNPQLKVIDTDPNIPTDLIKF KIFSK >gi|313656766|gb|GL545251.1| GENE 1381 1296650 - 1297924 1603 424 aa, chain + ## HITS:1 COG:lin0320 KEGG:ns NR:ns ## COG: lin0320 COG0265 # Protein_GI_number: 16799397 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Listeria innocua # 62 423 145 494 499 226 42.0 5e-59 MTEDKNPNVQNQSQNQASRSNLSTADKSQNKLLTKAAIVGVVAGLLGGGVSYVGLEQYSN YADSSSAQTSISSSSASISKNSAKNSGTMTSAYNKVKGAVVSVINLKKNSTRKSSSIYDL FGGGDSDSSSSSSTTKYTTYSEGSGVIYLKSNGKGYIVTNNHVISGSDKVQVVLASGKTV SAKVVGKDSTSDLAVLSIDAKYVTQTASFGDSKSLITGQTVIAVGSPMGSEYASSVTQGI ISAPSRTITTSSNQQTVIQTDAAINPGNSGGALVNSAGQVIGINSMKLSQSTDGTSVEGM GFAIPSNEVVTIINQLVKNGKVTRPQLGIKVISLSELNSAYREQLGIKTSLKSGIYVASV TKNSAASAAGMKSGDIITKVDGTSVSDVVSLHEILYKHKIGDKVTVTVNRNGKTVNLDVT LKSN >gi|313656766|gb|GL545251.1| GENE 1382 1298389 - 1298868 537 159 aa, chain + ## HITS:1 COG:BH4007 KEGG:ns NR:ns ## COG: BH4007 COG1576 # Protein_GI_number: 15616569 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 159 1 159 159 187 61.0 5e-48 MNIKIVCVGKLKEKYFKDGIAEYAKRLSRFVKFKIVEVPDEKAPENMSEAEQEHVKEVEG EKILSKIKDKEYVIVTAIKGRERASEELAKEIADLGTYGHSDITFVIGGSLGTSPAVNKR ANDLLSFGKLTMPHQLMRLVLTEQIYRAFMINSGSPYHK >gi|313656766|gb|GL545251.1| GENE 1383 1299042 - 1300505 1372 487 aa, chain + ## HITS:1 COG:CAP0099 KEGG:ns NR:ns ## COG: CAP0099 COG1193 # Protein_GI_number: 15004802 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 3 487 7 491 629 320 35.0 3e-87 MDQDLQFDQVKNKLASFARTSEAKERIVNIKPLTNIKAVESLLTQTEEAVKLLNLREHIP FAGSENIEHLLKKVEKGISLDATELETIADFLRVNLLIKRYFYKRKMLAPNLALIASDLV ELTKLENEIYSKIEHGIVSDNAGYDLGRLRRKKCELKEKVKNYLSDFLKNKNYEQYLQDY IPFKKEGHWTIAVKASFKSKIAGQVISKSANGKTFYIEPAKVSNLVSQILAIEAQITLIE EQILGLLTARIFEDLQALRTNLAIINEIDFILARGQFSIDFSAKRPQLNEKQELVLHEVR HPLIQHPVPLSLSLTNQTRGLMITGPNAGGKTVSLKTVGLSILMTEIGLFLPSSKPCNIP IVKDIFISIGDHQNLDNSLSTFSAEMTTLSNILQKAGKRSVILLDEIGSGTDPNEGAAIA IASLSELINSGSIVIATTHYSAIKDYANKQANFITASMDFDLTTLQPTYRLKMNEVGDSR ALWIAEK >gi|313656766|gb|GL545251.1| GENE 1384 1300926 - 1301693 296 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 217 1 212 311 118 33 7e-25 MNELLAVQNIKRYFKGKNKTIFKAVDGISFILHKGEVISFVGPNGAGKTTLIRSISGYLV PTSGKIEIMGLNLAQKPREARQKMGVVFGGDRGFYNSASAYDNLAFFARLLNVKEKDIKN NVLNALEIVNLLDVKDKYVGSFSKGMMQRLHIARGLVNKPEILMLDEPTAGLDVESVYTV RELIKNLKEAGHGIILTSHDMADIETLADTIHLIGGGKLVFSGNNDQIKEFAGVDANTSL EKAYLAITPKLKRGL >gi|313656766|gb|GL545251.1| GENE 1385 1301761 - 1302432 554 223 aa, chain + ## HITS:1 COG:no KEGG:LJ0601 NR:ns ## KEGG: LJ0601 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 2 223 23 244 244 220 63.0 3e-56 MLVITTTATMELYQYLAHYVNQTYTGQEWLIAGIMGTWASCTTSAGALAYQRWQGTLPYL LNSGISRELVLLATLSPAAIYGLVAFPLAGVLAIVLGIPVANLDWQLGLGIVILWLTATV LSYFISLLFILTRNAMAYEELVLTPILLLSGLLTIPSFALPYLKPVQMLSPLTLPIKLIY QEKINLELILTYLLVTIFFVYISKILTKFVIKRAFKENRLGVF >gi|313656766|gb|GL545251.1| GENE 1386 1302432 - 1303148 548 238 aa, chain + ## HITS:1 COG:no KEGG:LJ0602 NR:ns ## KEGG: LJ0602 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 4 223 5 224 239 192 47.0 1e-47 MENYKVTFSTIGDFENLRTIIVNYLILPVVSLVMFLLIIYDTGQDFRRVLIGSLATTAII TMVGIITGSYCYDQNVGTSEEIISIKPKFSQYWLPKIMIASVAAALELLVLALIALTSMG MLAYAGKLTSAFLIMIVFASLLAYICALAGDQKENPYWLTNIATASLVLVAGVIIPVSQY PTWLRVVAEVFPVSDLLDWILAGSYFNQALAVTLFKLGFWFILAGGMRLYHNWYVRNR >gi|313656766|gb|GL545251.1| GENE 1387 1303214 - 1303765 532 183 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1331 NR:ns ## KEGG: LDBND_1331 # Name: not_defined # Def: ABC multidrug transporter, ATPase and permease component # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 167 1 167 523 172 52.0 4e-42 MTLKYAHPFKLFMYLILAIIKSFEMVFVAYTFKLFIDYANKPKGSLLNIVLVAFGVLVLL GIAGVLYQLLYANIVTEINLNIKAKAAKYLLVNRNSNSEIDVSFMTNDLKQLETNRIEAQ LDIIMNAIQFISAFVSALLGSWILSLVFLFAAFAPALLQNIFGPMIEKVPMSGKKKIENI LIQ >gi|313656766|gb|GL545251.1| GENE 1388 1303789 - 1304784 836 331 aa, chain + ## HITS:1 COG:L162870 KEGG:ns NR:ns ## COG: L162870 COG1132 # Protein_GI_number: 15673504 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Lactococcus lactis # 29 328 223 524 529 135 30.0 1e-31 MSQLYDVEPSLMHRLYKAAKNMELALRKTNSVKQIANELTMTLAFICSMLLPFAIGVYLV VNGQITLGTIMMIAQLANNFINPIVGIFGDINNVKSTNPIWNKFLAIPELTKESIESATN KFTNLKIQNAAIKINDKQIFSNVNLDVKSGEKILLDAPSGWGKSTLLNVITGNYKLTTGD YLFNGKEENGNWSQLHQYFSFINQKPIILDDTLGFNITLGRKVSAEILDNAITKAGLKEL VADKGLDYQVGKNGKNLSGGQNQRVEIARAIIADRPILIADEATSALDQELSEKIHQTIL EDFPGTVIEVAHKVSEKEKAKFTQVVELVKA >gi|313656766|gb|GL545251.1| GENE 1389 1305239 - 1305490 288 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|260664982|ref|ZP_05865832.1| ## NR: gi|260664982|ref|ZP_05865832.1| predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] # 1 83 105 187 187 140 100.0 3e-32 MRTAELRMKEETAVAEKRGIELGTKQEARRKDQNTVKAFVTFFKRTQPEISEAEVYSAIK DSVDSDFSLSDGEIRKIIHQNLK >gi|313656766|gb|GL545251.1| GENE 1390 1305597 - 1306244 278 215 aa, chain - ## HITS:1 COG:no KEGG:LJ0072 NR:ns ## KEGG: LJ0072 # Name: not_defined # Def: ABC transporter permease component # Organism: L.johnsonii # Pathway: ABC transporters [PATH:ljo02010] # 6 191 1 187 217 155 50.0 8e-37 MEVKVLNPSFKFLLLLIIALVISATNSVELNLIVIFACFIYLVKYRLKLSQFFKLLLYPA LAAISVFVTVGYFSKSSIYDATSLASRIYVYVFTGAALTLTTDMTTLARSFEQNLHLPAK FAYGFLAAVNILPKMKRQIRQIRYAGLMRQTPLSLFSPRLYFKALLAALANSEMLAQAMV SHGFSEDKKEASCKLCKSASVITSGLEGFYLFLVF >gi|313656766|gb|GL545251.1| GENE 1391 1306219 - 1307595 940 458 aa, chain - ## HITS:1 COG:SP0720 KEGG:ns NR:ns ## COG: SP0720 COG1122 # Protein_GI_number: 15900617 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 72 450 77 441 461 205 34.0 2e-52 MQTISISNLNFAYDEQVIIKDLSANFTPGKLHLLIGENGAGKSTLLKIIAGLLPKFGGKL SGNITTNLKTSMMFQDPELQFALPTAYDELIFTLENIGVSRETYKNKITESAQFTGITPL LKRPLNQLSGGEKQKVALAILLAMDSDLLLLDEPFASCDLASRKSILLKLNQLVKAGKTV IIVDHDLPDYETLADEIWLFENKQLHHLTSNERASLFHHLKQPINTNFVLPEEQNSLFTF SNTVIKHKLPLIEVSNQAIYQGKITLLTGENGAGKTTLFKTLTKMHPYTGNLTYQTKEVK KWRLKHYLSHVAQVFQETNNQFLEITVKEELALSQKTQVNPYFTPEKLTEILDTLGLSKL LNHSVYTLSGGQKKKLQILLMLLSNHDVLLLDEPLAGLDSSSRTIIINLLAEVQKQTKQT FVIISHQISEFAPICDYHLVLAKKDLTYIQNGGESLES >gi|313656766|gb|GL545251.1| GENE 1392 1307802 - 1309274 1696 490 aa, chain + ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 460 4 459 486 243 32.0 4e-64 MDKKRTIIVTMALLLSNAMSGLDNTIINTALPRIIADLKGIEYMGWMVSVFLLGTAVATP LWSKLGERTSNKIAYQLAALTFLLGALFQGMAPNMFILLLARLLCGLGNGGMVSIPYIIY SDLYPNPAKRMRTLGLVSAFYSSATIMGPMLGGWIVDTLSWRWVFYLNIPVALISIILVQ IYFIDEKIERPKKKVDLGGALTLTLGLIIMLIGVDLIGETQLGTLLVLFAAALIFFGMLI IIEKRAEDPVIPGHLFKNSDLNIDFALFVLIWAAMMAFSVYAPMWAQGLLATSAFIGGAT QIPGAFTDLCASLSVAKMREHWSAGQVVLIGIGSLLIGYFLMMFGPITMPYFLIILAGMF QGVGNGIVFNELQVKVQQDVEKKDVPVATSFSFLIRMIASAVAASVFGLIMNAALFRGVR ESGGSITINMLNHLSDAETSKSLPQALLPQMRQILYSGIHNIMIVATTLIVGSFIIGYYA RQKEKRTISK >gi|313656766|gb|GL545251.1| GENE 1393 1309316 - 1310212 578 298 aa, chain + ## HITS:1 COG:no KEGG:lhv_0105 NR:ns ## KEGG: lhv_0105 # Name: not_defined # Def: putative regulatory protein # Organism: L.helveticus # Pathway: not_defined # 1 289 1 289 313 241 45.0 3e-62 MAIFTLDQYLRGVIKNTKQSTNDLKLDSKNKNQKDFAIYVENHNGGIHRYHSQEEWLFVE NGTCSIKLRNQILDLSAGNLVLIKAGQAFEIKEQTSETVVVKMRVKAIYDFEKELQNYMS LDNKENEILVTVKSLLAEKGYLFIKTSRLMKQSQLIENAINEYLNGDLFMASMMAGTFSQ LLALSLRTQVFSQATGKSKKANFIGSDLDRYIDLHFADVKLAEAAEYFGFNQNYFSNLVK QKTGKSFVEHVDERRMQEARELLAQPNLSLKEIISRVGYSSKSFSIKSLVSIMVLLQH >gi|313656766|gb|GL545251.1| GENE 1394 1310301 - 1312076 1360 591 aa, chain + ## HITS:1 COG:FN1127 KEGG:ns NR:ns ## COG: FN1127 COG4907 # Protein_GI_number: 19704462 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 27 533 27 537 606 95 21.0 4e-19 MLGVITLLFSVTGQRVLADSPSYDITNVKVASHIQADGNLTIERKITYKFDSSARGVYYR QNLLKNQKLLNPQVEIINQGVTKAIINNSSGSNDTYQLSYKNGYQFKVFHKVKAGNRFTI VYRYKITNAIKNWQDTAELNFKIIGNGWETDLDHVEAEVIFPSKVPILKAWAHGDISGHI QVLPDKGRIIMTADNVAGDTGIEVHAIFPTSVTTDNKNVSNEKRKQFILKQEKQLAEEAN QRRKRAGYILIFSIIVSILAIIVSLFVKKQGSKPKKMSALAHSYEIPEVSPIIAQILDKT SKPDTQALMALITELTGKHKLEIREEKVGKIIKKSSYRIFLKDQTALSQQPLLRFLFDEV GNGASFSTYELKKFDDPKELSEKYQAWRNQYYKQAYQRNYFSNKIREKKQNIVALAGILV VINAIIIFLSCMLSIISWQLLVLAISLAILNGISWLVAASRLSIYTEKGAEITNQVRSFK KMLENIGNFKMRDIGELILWEDIMPYAVALGLSEKVLKQLRLEFSESELATSDLVVYQTL YLTNSSSNNFEHSFTSAFNAGSSISSDTGSSGGFSSGSSGGFGGGSGGGAF >gi|313656766|gb|GL545251.1| GENE 1395 1312262 - 1312756 576 164 aa, chain + ## HITS:1 COG:BH2497 KEGG:ns NR:ns ## COG: BH2497 COG1760 # Protein_GI_number: 15615060 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus halodurans # 4 154 3 151 220 149 50.0 2e-36 MANYRSVFDIIGPVMVGPSSSHTAGAVAIGNAARLIFQKTPKKVVVHYYESFAKTHRGHG TDFAIAGGLLGMAPDDERIPKAPEMVAKAGIKLRFVEEEGPSPINHPNTAIIDLSDGEKQ ITVGGCSIGGGTIEIRLIELQGCKMNLTGPLLMVNYMNLILKNI >gi|313656766|gb|GL545251.1| GENE 1396 1312823 - 1313704 887 293 aa, chain + ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 290 1 290 299 302 60.0 6e-82 MFDSVKEIVDTANKTGKAISELIIEDEIKTSGLSRAEIWKKMQFNLQTMQKAVKRGESGK GVISSTGLTGGEAVKVAKYRQTHKTLSGDTMMGAVQAAMATNEVNAALGIICATPTAGSS GTLPGVIASLEKRLNLDEDALVRFLFTAGGFGLVIANHAGIAGATGGCQAEVGSASAMGA AAAVEAAGGTPQQCAEALSIAISNLLGLVCDPIAGLVEVPCVKRNAIGAANALVSADLAL AGCVSIIPADECIMALDKVGKSMPAALRETGIGGLAGTPTGQAIKAKIFGKDA >gi|313656766|gb|GL545251.1| GENE 1397 1313716 - 1314030 466 104 aa, chain + ## HITS:1 COG:lin2362 KEGG:ns NR:ns ## COG: lin2362 COG2151 # Protein_GI_number: 16801425 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Listeria innocua # 5 103 3 101 102 105 51.0 3e-23 MRAPEVIKDEIIKQLTTVVDPELGIDIVNMGFVYSIDLDEDGICLVELTLEILGCPLEIV LAKMIKEVLVKIPEVKNVDVEFRAQPRWTKERMSDYAKFALGVS >gi|313656766|gb|GL545251.1| GENE 1398 1314072 - 1314968 909 298 aa, chain - ## HITS:1 COG:SP1283 KEGG:ns NR:ns ## COG: SP1283 COG0501 # Protein_GI_number: 15901143 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Streptococcus pneumoniae TIGR4 # 1 298 1 299 299 296 56.0 2e-80 MLFEQISRNKRRTALILTIFVLILALVGAAVGYFVADSMIAGIIIAVIGTGIYLAIVLHD PAQLVMSMNNAEEIHEQDNPELWHIVEDMAMVARVPMPRVYIIDDASPNAFATGRDPEHA SVAVTRGLLEMMNREELEGVLGHELSHVRNYDILVSTIAIAMLTVITLLTDFTSRYLFWF GGSRRDRDDDDNDNKNLEIIKIVLFVITILLAPLAATLINLALSRNREYLADAGSVELTR NPHGLISALKKIENSQPMENVSSSSRALYIEDPVKKEHSSLFDTHPPTSERIKRLEQM >gi|313656766|gb|GL545251.1| GENE 1399 1314972 - 1315532 750 186 aa, chain - ## HITS:1 COG:lin0961 KEGG:ns NR:ns ## COG: lin0961 COG1704 # Protein_GI_number: 16800030 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 184 1 185 185 202 57.0 3e-52 MTIWIILAIVVVLAIIYITTYNSLQNAKVYTEESWSQIDVQLKRRNDLIPNLVETVKGYA THEKETLSQIVELRNQLTQVPADDHEEKMKVSNQITDSLKSIFALREAYPDLKANQEFGK LMEELTNTENKIAYSRQLYNSSAALYDRKLLTFPSNIVAGIHHFTKVEYLVTPEAEKEAP KVSFKD >gi|313656766|gb|GL545251.1| GENE 1400 1315629 - 1316735 960 368 aa, chain - ## HITS:1 COG:L20481 KEGG:ns NR:ns ## COG: L20481 COG0471 # Protein_GI_number: 15673760 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Lactococcus lactis # 35 360 49 384 392 139 31.0 1e-32 MTVLKNIFKDRIFQISLVITIISLFFARPRISDINFHTLYSVTAMLCLIQIYAYLHVLDI LAYKLTSLADNTRKLTLLFTLLSVLSGMFLGNDITVLTLIPLYLNVAKKYQLPQIYPTTL IGMGANIGAAFTPWGNPHNIFIVSNYNVPANVFFAWSTPYLIVSLVILIATCFFLPKDHI PVNQTENIHVNWRMTILTTAVFIFFFFGVFSIVPIYYPMIAALLLALLINPRIYLKIDYA LLLTFTLFFIFISDIQQIPLIVGLIHMTVYSEGSTYLTSIISSQFISNVPSTILVGKFTN FAKALLLGSNIGGFGSVVGSMANMLVLKTFNQHSSASKRKFFKHWTILQFSGLIILTIVG WLRIYFNI >gi|313656766|gb|GL545251.1| GENE 1401 1316928 - 1317329 631 133 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_00460 NR:ns ## KEGG: LAC30SC_00460 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 133 1 133 133 155 54.0 4e-37 MTNKTVQINIKDEAQELIKKHVKLGQVVILTLDDGSNKYSTLGGTCTIGADFQLIVTDQK DPEYPVVMENNAGLEMYTSDNELAFLTDGLLLNARNAVISLYDNSGVIDGAVAVREYTPH ELTAEEMKNGKTC >gi|313656766|gb|GL545251.1| GENE 1402 1317628 - 1317762 174 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSRNIHTGINPHRRPRNAANSKKRVAHAAAVVEYLNKAAKDENK >gi|313656766|gb|GL545251.1| GENE 1403 1317902 - 1318543 701 213 aa, chain + ## HITS:1 COG:lin2634 KEGG:ns NR:ns ## COG: lin2634 COG1896 # Protein_GI_number: 16801696 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Listeria innocua # 1 191 1 190 215 227 58.0 1e-59 MGLHAYLQGLSSLESIDRAPGYFKYQHHSVAAHCFRTAEFAQMMGDIEEVYGDQEVNWKA LYEKSLNHDYTERFIGDIKTPVKYATPQMRKLVGDVEEAMTNEFIKHEIPAEFQEIYRKR LSEAKDDTLEGKILSVCDKLDLMYEAYGEIELGNPNPVYMQMFKESLETIKEFDDLACVK YFIKKILPDLFKGDFAGAVKMQKIAFSILVEEN >gi|313656766|gb|GL545251.1| GENE 1404 1318543 - 1319457 606 304 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_00505 NR:ns ## KEGG: LAC30SC_00505 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 304 1 304 304 426 67.0 1e-118 MRLQCESCGLRLASFHFKEKGLINPKLRSICDICLERGLSAEDYANDVIATFAQALLYGY RGKAGTGEHNFIVKGQKQRKSYEAFMQDFDSNEVASGQIDRSELNQAIIKSEDGKLDFIP QGGTEFSKNLAGLGLKVNFQLNEVDYINRERIRAKYKYICQYCGRPGRSVDHKDPVSLSH NNDLDNLILSCSECNRIKSDMPYDLFVKLNKQVEDLNKKLVRYDASLRTLKEEFEHRRRY LAGQVHLKGVVNDPELNAIRKENKRLQDAIDSLESDYDAIRHLRENHFTTGWKLALVAKK DDIV >gi|313656766|gb|GL545251.1| GENE 1405 1319574 - 1320056 466 160 aa, chain + ## HITS:1 COG:SP1799 KEGG:ns NR:ns ## COG: SP1799 COG1609 # Protein_GI_number: 15901628 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 3 144 9 149 333 157 52.0 8e-39 MATMKDVAREAGVALGSVSRVINHAPGVKQKTIDKVNAAIKKLNYVPDEYARGLKVKSSK TVALILPSIWNLFFAEFAYYVEKYLAEKNYKLLLCNYSNNPKAEQHYIKMAKQNKIDAII CITYDDLDKYFYAGIPLVSIDRYFEQKFLMLLRKIMKVAD >gi|313656766|gb|GL545251.1| GENE 1406 1320134 - 1320556 513 140 aa, chain + ## HITS:1 COG:SP1799 KEGG:ns NR:ns ## COG: SP1799 COG1609 # Protein_GI_number: 15901628 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 2 139 195 329 333 75 37.0 3e-14 MKRHKGFAEYLSEQGYEFADVYLLEPVTKEEEETELFKLLDKNPEVDGIFCNTDSLLLDV KNWLAQREISVPEQIQLIGYDGIKPDFNSELGISTIRQPLPEMAKCAVEMVIEKVEQHRD EQRIERFPVSYIEGNTTKNI >gi|313656766|gb|GL545251.1| GENE 1407 1320634 - 1321920 1505 428 aa, chain + ## HITS:1 COG:AGpA379 KEGG:ns NR:ns ## COG: AGpA379 COG1653 # Protein_GI_number: 16119492 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 11 403 5 392 422 143 28.0 5e-34 MKKFWKTGLAAIACMAGLSLAGCSSQKAQNLNTVTMWVHVSKDDPEGKALSKNISIFNKT NKHGYKAKVEFIPRSSSGGGYEDKINAAVNSGSLPDVLTLDGPNTAAYAHSKIIQPIDKY ITNKSDLLPSIVKQGTYKGKLYAVGYQESSVGIYYNKKLFKKAGISDSELPTLNKPWTWD QFLSICKRLKNKLHTTPFNMNLNDRSEWSIYAFAPFVWSANGDIVNSSSTKSTGYFDSAK TASAFKFIQELVKKGYTTLSPKDKGFETGKYPMFLTGAWEIQSLKTQYKSLDWGVLPYPV SPETKKLVSPTGSWQYAMSATAKNKKAAGALVNFLASKEGSYNTDKALGVLPSRKSNIAR ISKNADSAMKFLIEQNEQSGHARPIIVNYPQISRTFAETVQDVTLYQKNPNVEKVLKKQA KAMQKYLK >gi|313656766|gb|GL545251.1| GENE 1408 1321941 - 1322816 1012 291 aa, chain + ## HITS:1 COG:lin0760 KEGG:ns NR:ns ## COG: lin0760 COG1175 # Protein_GI_number: 16799834 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 4 285 10 289 296 206 38.0 4e-53 MKNKVLRNQIGWLFVLPAILLLLIFLIIPFAMSISYSFTDYNILNPDAKKFVGLANYIQT FKDGIFLQSLKNIAQFVVFIIPIQLGLALGLALIVNKKRPFNLFYKIAFFAPVVVSLTVT SVLWLYIVNPDQGLLNSLLKIIHVAPQPFLTSAKQAMYVIIGISAWQGAGYQMLIFLAGL QDIPESLYEAAELDGASKWKKFLYITLPGLKPTTVMILTTTLISALNLMTQSMVMTQGGP EYSTMTPIYYIYRTGFTDRQLGYASAVSVIYGLIIIVLTVVQRRITNRKEK >gi|313656766|gb|GL545251.1| GENE 1409 1322819 - 1323664 810 281 aa, chain + ## HITS:1 COG:lin0761 KEGG:ns NR:ns ## COG: lin0761 COG0395 # Protein_GI_number: 16799835 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 3 277 7 289 291 169 33.0 7e-42 MSRKKANLIISTFLIMMLALFFIFPLVWMIASSLKQEKDIYSQMTSIFAFLPSTNPKDWG IAYQQLFSRFPIFRYILNSVVYAISLTAGSLIVNSLAGYAFAKFDFWGKKALFAFLISLM VIPGATLLIQQFQVAKQLGILNTMLAVILPGMSSPFAIYMFRNAFEAIPANVSEAAEIEG AGSFRIFWSVLLPMAKPTIATIGTLSFIGSWNDYVWPLMVLNDSNQFPLQVAITNINNTQ PVYMNQVMALLAISTIPLILVYAFFQKYLVQGLGSTGNGDK >gi|313656766|gb|GL545251.1| GENE 1410 1323664 - 1324179 545 171 aa, chain + ## HITS:1 COG:SP1795 KEGG:ns NR:ns ## COG: SP1795 COG1621 # Protein_GI_number: 15901624 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 2 169 10 176 439 171 47.0 7e-43 MKANDFLFEKVRALEKDGARPNLHFTPLFGWLNDPNGLIYYNGMYHLFYQYNPFKNQWGN IHWGHAISRDLQSWNDMPVALEPSESYDKDGVFSGSAIVKDDQLYVLYTGHSVDAKGQAH ETQCLAYSKDGVTFQKYDQNPVIDLDTIPGIEPENFRDPKVIQRDGKYYLF >gi|313656766|gb|GL545251.1| GENE 1411 1324287 - 1324658 296 123 aa, chain + ## HITS:1 COG:SP1795 KEGG:ns NR:ns ## COG: SP1795 COG1621 # Protein_GI_number: 15901624 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 1 109 217 331 439 65 32.0 3e-11 MTECPDFFSIDGRDFLTFCVIWGESKRSQVYLAEGKMDWDQAEFTCDKFMALDGNADIYA TQSFNYEGSRVLISWFRSMENETYLVDTNHQWNGMMTIPRYLELAEDGKKVIQKPFGVFK TEK >gi|313656766|gb|GL545251.1| GENE 1412 1324951 - 1326054 1187 367 aa, chain + ## HITS:1 COG:SP1580 KEGG:ns NR:ns ## COG: SP1580 COG3839 # Protein_GI_number: 15901422 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 1 366 1 375 376 507 67.0 1e-143 MATIDLNHIYKKYDKAENYSVTDFDLHIKDNEFIVFVGPSGCGKSTTLRMIAGLEDITKG TLKINDKVVNDVAPKNRDIAMVFQNYALYPHMTVFENMAFGLKIRKVDKTTINKKVTDAA KVLGLEPYLKRKPADLSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAKLRVSMRAEIAK IHQDLKTTTIYVTHDQVEAMTLADRIVVMKDGKIQQVGSPLEIYRHPANKFVAGFIGAPA MNFFNCQLEKGKVVLNNAFSIPVPEGIYKQLAEKGYEENEVILGIRPEDMHSEELFLNTF PENTVSAKVVVSELLGSETQLYCKVGDFELVSKVDARDFVKPGATIKLGFDLNKASFFDV KTEDKIL >gi|313656766|gb|GL545251.1| GENE 1413 1326354 - 1326527 177 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|260665004|ref|ZP_05865854.1| ## NR: gi|260665004|ref|ZP_05865854.1| predicted protein [Lactobacillus jensenii SJ-7A-US] EmrB/QacA family drug resistance transporter [Lactobacillus jensenii 208-1] putative tetracycline resistance protein [Lactobacillus jensenii 1153] putative tetracycline resistance protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] EmrB/QacA family drug resistance transporter [Lactobacillus jensenii 208-1] # 1 57 1 57 57 100 100.0 4e-20 MYSPLLDTVTGVIPKSEIGRGAEMFDLLINISGSLGVAISDVLREESVAVLKSYFGK >gi|313656766|gb|GL545251.1| GENE 1414 1326598 - 1327191 560 197 aa, chain - ## HITS:1 COG:SP0074 KEGG:ns NR:ns ## COG: SP0074 COG0110 # Protein_GI_number: 15900019 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Streptococcus pneumoniae TIGR4 # 1 186 1 182 185 151 43.0 1e-36 MEENTKNMLAGLPYHPSQELVTIAQKSHRLCQDFNQLYDTDIKRHDIIDQLLGKHGKNTY FQGPIYFDYGAFTEIGDNFYANTNLTVLDTCPVKIGNNVMIGPNCTLATPLHPLRYQQRN GNGKTHYEYGAPITIEDNCWLASNVVVNPGVTIGAGSVIGSGSVVTRNVPANSLVVGVPG KVIRKITEADNLDSFPG >gi|313656766|gb|GL545251.1| GENE 1415 1327284 - 1327454 225 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855869|ref|ZP_04646158.1| ## NR: gi|238855869|ref|ZP_04646158.1| hypothetical protein LACJE0001_0353 [Lactobacillus jensenii 269-3] amastin [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00405 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0353 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00405 [Lactobacillus jensenii 1153] amastin [Lactobacillus jensenii 208-1] # 1 56 1 56 56 93 100.0 6e-18 MEFIKKYAFWVGELAILLACLIWYGVSGHNLQSTLLNSVAITVLAGLVIKLINRKK >gi|313656766|gb|GL545251.1| GENE 1416 1327463 - 1327954 413 163 aa, chain + ## HITS:1 COG:SP2081 KEGG:ns NR:ns ## COG: SP2081 COG3542 # Protein_GI_number: 15901897 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 153 2 147 153 132 49.0 3e-31 MDAKEYIERLNLALHPEGGYFKEVYQAKDEYELAEGKRKYFTSIYFLLTPETKSHLHRLN HDEVWYYHDGASLKIHCLYPDGHYQLVKLGKNLVNGEQLSFVVPAGVIFGSELAEGKFAL VSCMVAPGFDYEDFELFSQAELIKQYPEQKRIIMDMAYKEIRG >gi|313656766|gb|GL545251.1| GENE 1417 1327970 - 1328269 367 99 aa, chain - ## HITS:1 COG:no KEGG:LA2_08640 NR:ns ## KEGG: LA2_08640 # Name: not_defined # Def: hypothetical protein # Organism: L.amylovorus # Pathway: not_defined # 1 92 1 92 111 94 48.0 1e-18 MSHEQLKKGYETEIAYQKHMLRNLSYYFELAILISAIGIVMTYYFWGKNLPILLLGIFIM GIGLLAMLILATGAIRGRKNLNLVIADYKKKIKTATTKE >gi|313656766|gb|GL545251.1| GENE 1418 1328406 - 1329242 882 278 aa, chain - ## HITS:1 COG:CAC1460 KEGG:ns NR:ns ## COG: CAC1460 COG3716 # Protein_GI_number: 15894739 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Clostridium acetobutylicum # 3 278 2 277 277 362 62.0 1e-100 MTDRKKISKKTLNKAFHHWYYGHLTCFSQEHMQTFGYLTSMLPIVEELYDKKDDQKEAMK TYTAFFNTEPQLGSIIVGITAGLEEAKANGDAVDGETINGMRAGLMGPIAGIGDSLIVGT LIPILLGIALGMSTGGSPVGAIFYIIVWNLIAYFGMRYLFFRGYEMGDKAVEFLVGAQGS AIRKAIGVVGAMVVGGVAATWVNISTAFELKNASGKTFLSLQKQFDSIYPGLLTVLFILL CWWLMSKKKISAINTMLILVAIAFIGVLVGFFNPGLKY >gi|313656766|gb|GL545251.1| GENE 1419 1329244 - 1330095 1233 283 aa, chain - ## HITS:1 COG:CAC1459 KEGG:ns NR:ns ## COG: CAC1459 COG3715 # Protein_GI_number: 15894738 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Clostridium acetobutylicum # 1 283 1 281 281 313 62.0 3e-85 MTISWLQAIILGIFASLSSMPGMGGTSIGNYTLGRPLVGGLVCGIVLGDIKLGIACGVAM QLVYIALVTPGGTVSADVRAVSYIGIPLAMVAIHSQGLSATGADAANLAKSMGTLVGTVG TVLFYGTATMNLVWQHMGWKDVEKGKFHKLYLVDWAYPWISHICFSFIPTLIMTKLGATA VTALRNALPMDGIPMKTLFTVGAMLPCVGIAILLRQIVNTPVDFIPFLVGFTLAASLKLN LVSVAIVSLIFALLTYQLEMARASKAIAPTTSDTSADDDEEDI >gi|313656766|gb|GL545251.1| GENE 1420 1330123 - 1330626 770 167 aa, chain - ## HITS:1 COG:CAC1458 KEGG:ns NR:ns ## COG: CAC1458 COG3444 # Protein_GI_number: 15894737 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 1 167 1 163 164 212 64.0 2e-55 MSVSFVRIDDRMIHGQTVTRWAKEMPCDGIIAVNDAASTNPVLKQAYISAAESQGKKGFV WTLDHFKDVQEKVLASSRRYFLITKNPLDMKKILVDMGFIPDDVKTIIVGPGNDRPGAIK LGNNQSFTPEEGEAFEAISKAGYTVKFQLLPDVEIGTWDKYKNKFGF >gi|313656766|gb|GL545251.1| GENE 1421 1330639 - 1331073 612 144 aa, chain - ## HITS:1 COG:CAC1457 KEGG:ns NR:ns ## COG: CAC1457 COG2893 # Protein_GI_number: 15894736 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Clostridium acetobutylicum # 1 144 1 142 142 96 37.0 1e-20 MKYLVLVSHGGFADGLKTSLAMFAGDQINRVFALGLEPGTSADTFKEKVNHFFDEHDFSN DDQFFVLADIVGGSPLTTFTSVLSERGFLANSQIFGGTNLTMALTTLVSMDAMDKATLSS TILSEAGNALEEFKVAAPEDDDEI >gi|313656766|gb|GL545251.1| GENE 1422 1331270 - 1331434 74 54 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855876|ref|ZP_04646165.1| ## NR: gi|238855876|ref|ZP_04646165.1| Cof protein [Lactobacillus jensenii 269-3] HAD superfamily hydrolase [Lactobacillus jensenii 208-1] Cof protein [Lactobacillus jensenii 269-3] HAD superfamily hydrolase [Lactobacillus jensenii 208-1] # 1 34 1 34 262 67 97.0 3e-10 MWIIFSDIDGTLINDKLEILPRTKESILKEVKKAIFLFLYPQEVLWRCKLSLSS >gi|313656766|gb|GL545251.1| GENE 1423 1331410 - 1332057 697 215 aa, chain + ## HITS:1 COG:HI0003 KEGG:ns NR:ns ## COG: HI0003 COG0561 # Protein_GI_number: 16271979 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Haemophilus influenzae # 6 211 55 257 262 90 30.0 3e-18 MQTVIKQLGIKCPLSAFNGALILNEEGVQIYSKPLPLAEAREIVKELNDLTSVTWNIYSD LSWLTQKPKTQALLAEEKIVKLCAKAIDVSEIENLKCIHKVLVMGPKNILDELLKIYSQR YSNLYLVKSKDTLLEIVASGVEKADSIKRVSDYYHVEISNTLAFGDNYNDERMLKTVGKG YLMGNAPEELKKHYPYITADYNHDGIAEVLENLEN >gi|313656766|gb|GL545251.1| GENE 1424 1332179 - 1333009 737 276 aa, chain + ## HITS:1 COG:CAC1453 KEGG:ns NR:ns ## COG: CAC1453 COG1879 # Protein_GI_number: 15894732 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Clostridium acetobutylicum # 1 276 51 325 325 196 42.0 5e-50 MTMNNSFYQVLNEEVEKRVDARADKLIIRDPALDAQKQVNQINDFIKKGASAIIINPVDG NNNKLIAILNKAHKKGIKIVVVDSQMADKAHVDATLLSDNYQAGVLCAKALMKKKKRANI LLLEHYSAMSANDRIRGFTDTLFNKNYHVVGKLNTLGQSEYAYPAVLKRLKTQADFDTIM SLNDQAAVGAIAALDSQKVKQVGVYSVDGSANMKQLLLNNQNAIATAAQSPKEMGKLAYK LTYDLLAGKSVKSKIKLPVHLITKDNIKNYNVTGWQ >gi|313656766|gb|GL545251.1| GENE 1425 1333009 - 1334061 875 350 aa, chain + ## HITS:1 COG:CAC1454 KEGG:ns NR:ns ## COG: CAC1454 COG4585 # Protein_GI_number: 15894733 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 15 332 14 334 441 145 29.0 1e-34 MKGSFKKLIAFRRVLVWLNLIAVLFNSSVFYLASVYIVQSNMSFEFLNKINFLPGAPLTI FWSSTLSYLLLAIVMTYRHYFKKDEEHNSRLLLIEFFLTILVFWNLRFTYNGVILLYFVD LFISLRNKEPSRQLNLWLGMAVFILVIFSLTDTVLIENISNIPQLDTYIEFLPLATKTTV ILISNVLNVVNLIIFMGILVLYAIYLHNREYEIKEKLAKAAQTNLELKNYAALSSHIAED RERKRIARDLHDSVGHALTGVIAGVDAAKVLIDLNPEKAKEQLTKVSQVVKQGLEGIRAA LNKLRPGALENYTLQAALKKMLSEYSELSQMKFDFQYEWGSAEFEKQRKM >gi|313656766|gb|GL545251.1| GENE 1426 1334058 - 1334324 121 88 aa, chain + ## HITS:1 COG:CAC1454 KEGG:ns NR:ns ## COG: CAC1454 COG4585 # Protein_GI_number: 15894733 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 2 81 354 434 441 79 41.0 2e-15 MIFRIVEESVTNALRHGHASQVSIHFLVNKNYQILIKDNGSGCSKIKPGFGLTQMKERVA IIGGHIEFKSGDGFEIKVEIPKEGANHD >gi|313656766|gb|GL545251.1| GENE 1427 1334317 - 1334472 134 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855879|ref|ZP_04646168.1| ## NR: gi|238855879|ref|ZP_04646168.1| transcriptional regulatory protein DegU [Lactobacillus jensenii 269-3] two-component system response regulator [Lactobacillus jensenii SJ-7A-US] transcriptional regulatory protein DegU [Lactobacillus jensenii 208-1] transcriptional regulatory protein DegU [Lactobacillus jensenii 269-3] two-component system response regulator [Lactobacillus jensenii SJ-7A-US] transcriptional regulatory protein DegU [Lactobacillus jensenii 208-1] # 1 45 1 45 223 80 100.0 4e-14 MIKVLIADDQELIRSSIQIILEANPKFKVTATVADGEEVLDAIKKNVQMLS >gi|313656766|gb|GL545251.1| GENE 1428 1334493 - 1334987 517 164 aa, chain + ## HITS:1 COG:CAC1455 KEGG:ns NR:ns ## COG: CAC1455 COG2197 # Protein_GI_number: 15894734 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Clostridium acetobutylicum # 1 160 60 220 225 206 63.0 1e-53 MDGTVCTKYVKSKYPEIKVIILTTFDDDDFIFSALKYGASGYLLKGVSNDQLYQAIETVY QGGAMINPNIAEKVFKLFSKMAQSNYAIQVDQTESKHFSKNEWRVIQQVGLGLSNKEISA KLYLSEGTVRNYISSILSQLDLRGRTQLAIWAVQTGVTSRDFGE >gi|313656766|gb|GL545251.1| GENE 1429 1334989 - 1335897 781 302 aa, chain + ## HITS:1 COG:CAC1456 KEGG:ns NR:ns ## COG: CAC1456 COG1653 # Protein_GI_number: 15894735 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Clostridium acetobutylicum # 35 294 38 303 439 201 39.0 2e-51 MEKNKAKLMIVTIFLLLLMGSVTYFAKISSEPKTLTIGVYTGSYWDVPQGDSYHMIDYVV KKFKKRYPNVRVIYESGITKTNYRSWLANSLVKGTEPDVFIVPANTFNILASDGALLDLN GYIRHDKFKTSDFYQAALESGQYHNQQLALPFEVNPSLMVVNTSLLAKAKLKIPNFDWQP TQLELLNKKLRQKDYYGVTENFNWQAAVNSYQGQLFTSDGTKSQLTSNKVMQGLNLITEL EQLNNNINVTSAMFDQGKVAFSPMTLAQYRTYTSYPYHVTRNSNFNWDVIKMPSMSKKGE LS >gi|313656766|gb|GL545251.1| GENE 1430 1335957 - 1336259 255 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855880|ref|ZP_04646169.1| ## NR: gi|238855880|ref|ZP_04646169.1| sugar-binding periplasmic protein [Lactobacillus jensenii 269-3] sugar-binding periplasmic protein [Lactobacillus jensenii 208-1] sugar-binding periplasmic protein [Lactobacillus jensenii 269-3] sugar-binding periplasmic protein [Lactobacillus jensenii 208-1] # 1 100 324 423 423 180 100.0 4e-44 MKLLVSKDVQTELIKYSQGVSPLKKIAQSTAMKKMLVSEGSNLTTQKLNAILNSGNVEPK FKKYYSVMDDADYQVENGLQSGKLETEVFEMQNHLNEELK >gi|313656766|gb|GL545251.1| GENE 1431 1336307 - 1337317 1198 336 aa, chain - ## HITS:1 COG:AF0807 KEGG:ns NR:ns ## COG: AF0807 COG1304 # Protein_GI_number: 11498413 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Archaeoglobus fulgidus # 49 326 93 357 366 124 32.0 2e-28 MTHKQNKVDASSGSSFTEKLEQEAPQVWPGPKGMIPVTSGRADDANVHNRNYLDNILVEM RIIDAVKPDLTTEFFGKKYASPINLAAVSHLNKVLPDKSRKPMQEKVQAAKSQNVLNWIG MESNQDYAEIVKNSGDTVRIVKPFAEHEDIINELRFAQDLGAVAVGMDIDHVPGEDGKYD VVDGINLGPVTFSDLRRYAHTTNLPFVAKGVLSVQDALKARDAGASAIVVSHHHGRLPFG VPPLKMLPAIKDALADSNMTIFVDGSLMTGYDVYKAMAMGADGVLVGRAILSELLQAGQK ATEEKIKLLNEQLSQMMLYTGITDTKSFDSSVLHFN >gi|313656766|gb|GL545251.1| GENE 1432 1337389 - 1338654 330 421 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148990506|ref|ZP_01821647.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae SP6-BS73] # 1 401 1 408 415 131 27 9e-29 MKVFFKNSNFRLFATGSFLSSAGDVLFYLAFMTYASNLKNYSLAISLIAISEAIPKFFTL FGGYLADKTRDKFKSIFNLALVRCILYTIVGLLLTTKMSDWNLVMCIALANFISDTFGTY SSGLVTPLIVAILGKENYAEGSGFANGMSQTISMLARFAGASMLLFMSYSSLAFINAATF LIAGILFALVGKRVNTQKLPLPKSNKLNFFQTLKTSFKQVKKQNNLLTMISILVLLNAVL AVLIPLFTIILATHKQTMLIGSYSFTLAIGETIVGGGMILGSLFGPTIFKKTSVFLLAIY SSILALFASLSLFINNLFVILGTFALLTFFVATISLKMNQWLISSVESSILGSTASLLNT LLMASDPFMTMLLSSITAISNVYIAISVLLCFNVLVIFLIITAYLKNKALKANIPLAESE A >gi|313656766|gb|GL545251.1| GENE 1433 1338898 - 1339686 557 262 aa, chain + ## HITS:1 COG:no KEGG:LA2_00105 NR:ns ## KEGG: LA2_00105 # Name: not_defined # Def: transcriptional regulator, XRE family protein # Organism: L.amylovorus # Pathway: not_defined # 1 257 21 274 276 223 46.0 9e-57 MCEGIVSRPFYVKVESNQTGISAESLAKILFLHEIDISSFYKLLKETYMPKENQMSEYLQ NKMMFTFDRKDLQQLKEYCKQVHVLPGHKILKLRSIVSVAYLENKLEQIDQQTIKEIYEQ FDEGKNWITRPELLRLLANTMPMWSQEHLDFLIGRLLAYIQKNKSISKIMIERYLRLLEN YLGICYERKTYVTAQEKIKVEKTIKTILDLTENVFHFMIYRFFAIYFKCLIKGDYKSANH IQDMLKKYGYEKVVKSWSKINM >gi|313656766|gb|GL545251.1| GENE 1434 1339763 - 1340989 965 408 aa, chain + ## HITS:1 COG:SP0168 KEGG:ns NR:ns ## COG: SP0168 COG0477 # Protein_GI_number: 15900106 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 21 376 15 358 392 96 28.0 1e-19 MLKLKKNLSVYTLLAGRVATNIADSLFYLAILWYFKQVTHSTMSVSIIFAITSGIDMLSF GFGPIIDRVSIKKLLKISTILQALISIVVFLALITQFHNLLMTIVLMLLFIASTILSAII YPAQYKLLPVLVPEREILRFNGLFQVTFTTLDMILDAGVTVIIALFSIDATVILSALVFA LALLFYAHVNISVSAKDILEEDEYFSDSYLNDILIGWKTLKKEKNILELILPLGVVNFFY GIFTVGLPYFAQDYIHNSIIGYGELLLASSIGGVLGAFLVQKFKASKKEMRLFVAICFLG AAIFRLIVPLSVNLNIWILLLSSAISSAWITMMNTNFEALVQVSFSSAILGRVQTINDSI LSIMIPIGSIFGGWIVKSWGSLSTQYIYGFALFLSAIYYFLVIRLKSK >gi|313656766|gb|GL545251.1| GENE 1435 1341077 - 1341418 214 113 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_10090 NR:ns ## KEGG: LAC30SC_10090 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 110 1 114 286 89 43.0 6e-17 MKIGELLQKFRLEQGKTRKEFASDVISPSYYCKIEKGSHRVSAEDLIELLKRNNIRLSDF FGMFDSQDLAKQLNLFHEMIVAAHYNGDKDSLEKIPNLIERSLLPEEVKKSRY >gi|313656766|gb|GL545251.1| GENE 1436 1341553 - 1341870 225 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472854|ref|ZP_07813342.1| ## NR: gi|313472854|ref|ZP_07813342.1| hypothetical protein LBJG_01750 [Lactobacillus jensenii 1153] hypothetical protein LBJG_01750 [Lactobacillus jensenii 1153] # 1 105 1 105 105 189 100.0 7e-47 MPLYDCFSVNLIVQDILKEYKPPFSKELKRTLLGIICNNLFLKLKIGEYEGIDKLVSIAD AIPSSPDLVFYKNNIIFYKNMALYKSSNATKYLKNAKKQSKFVPG >gi|313656766|gb|GL545251.1| GENE 1437 1341969 - 1342715 282 248 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 21 228 147 352 398 113 34 3e-23 MSENIINVNHLQKNYGDHQVLRDITFDIKKGEIVSIIGPSGGGKSTMLRCINLLEEPTSG EINFNGSDITKPGFNRNDYRSKVGMVFQQFDLFENKNVLQNCMIGQELVLKRSKEEAKKI ALENLKKVGMDPFIDAKPKQLSGGQQQRVAIARAISMNPDVLLFDEPTSALDPEMVGEVL DVMQKLATTGLTMIIVTHEMAFAKHVSDKVIFMSDGVITEQGSPEDIFDHPQEEKTQKFL RNFRKEDI >gi|313656766|gb|GL545251.1| GENE 1438 1342715 - 1344070 1354 451 aa, chain - ## HITS:1 COG:SPy0277_2 KEGG:ns NR:ns ## COG: SPy0277_2 COG0765 # Protein_GI_number: 15674455 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 205 442 2 234 239 246 51.0 5e-65 MGKKVVAVKTEWDGLLPALTSGKIDLIIAGMSPTAERRKAINFSNPYRKSTFVVITKSNS KYANAKSLTDFAGAKLTAQQGTLHYDLIKQLKGAVRENAMKDFAAMRQSLISGTIDGYVA EDIEAQSFKSVYPNSTAINISKMPGFHVSASDSETSIGVKKGNDKLLAQVNAALATISNS KRDQLMETAVKEQPSTDSDKKTNWFVSTWNTYGSMILAGVGMTLLLALVGTIAGFFIGLV VGVIRTIPTPTSLLNRWLLKVVNFLLSVYVEVFRGTPMMVQAAVIYYGIAQFWHLNLNRT VAALVIVSINTGAYLAEVIRGGIMATPKGQFEAASALGMTHNQRMWNIILPQAIKNCLPS ITNEFIVNIKDTSVLSIISVSELFFVGSTIASQSFQFFQTYLMISAIYLVLTFSITRIFN LIEKKLQGPKNYNLMANQVQVGTPEEQGGNN >gi|313656766|gb|GL545251.1| GENE 1439 1344046 - 1344276 276 76 aa, chain - ## HITS:1 COG:SPy0277_1 KEGG:ns NR:ns ## COG: SPy0277_1 COG0834 # Protein_GI_number: 15674455 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pyogenes M1 GAS # 17 74 22 79 283 78 58.0 4e-15 MASIGFFGNNNQEVQAAKSNGVLRIGLEANYPPYNWTQTNSSNGAIPIEGSKTYANGYDV QIAKLIGKSWVKKLSL >gi|313656766|gb|GL545251.1| GENE 1440 1344642 - 1345274 540 210 aa, chain - ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 7 199 3 193 202 150 41.0 2e-36 MNYQNFFQNRPTTEIAQDLLGRTLTYENNGEILGGLIVETEAYLGPKDYAAHSYNGRRSP ANEGLYCPGGYLYIYAQRQYFFFDIATQEKDNPEGVLIRAIEPTLGIKTMIKNRSGKTGF LLTNGPAKMMQAFGVTSRKWDLHPIEKTPFSVDLTTKKAIKEIASGPRIGVRQDNDWSKR PLRFYVAGNPYVSDMKKKNIQENNGWVLTK >gi|313656766|gb|GL545251.1| GENE 1441 1345327 - 1345689 378 120 aa, chain + ## HITS:1 COG:AGl939 KEGG:ns NR:ns ## COG: AGl939 COG3189 # Protein_GI_number: 15890587 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 117 31 145 146 102 44.0 2e-22 MSEIKLVRIYSHEQEKGFRVLVDRLWPRGISKVKADLDVWAKEMGPSNELRKWFNHDPQK FPEFKAKYLAEIKANPETKSFVELIQEKLKESDVIFLYGAKDPLYNQAVILKEYFTSLSK >gi|313656766|gb|GL545251.1| GENE 1442 1346074 - 1346364 294 96 aa, chain - ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 5 87 1 82 229 87 51.0 4e-18 MQENIQDLKSALKQAQHIVFLTGAGVSTHSNIPDYRSKSGIYHGTELPPEIILSEDTLYH QPNLFYQFVMNNMYFQRPSPISSTKRLQRFVIKKEL >gi|313656766|gb|GL545251.1| GENE 1443 1346451 - 1346927 655 158 aa, chain + ## HITS:1 COG:no KEGG:LJ0094 NR:ns ## KEGG: LJ0094 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 3 158 2 157 158 141 44.0 7e-33 MTSLFYGLFDLLIIGYIVYSWYWQAVVDYPGRYRISSIIWAVVFVYVSISWNFIDITQAG APVLLAVFLVMSVMDGVSGLGEKRIVISGYIRRTIKYSDLDQITLINAPLTNNKSYVVME LQSKGHVYYIRFAKGMEDVIATLKKHLGNDVGIKIESL >gi|313656766|gb|GL545251.1| GENE 1444 1347210 - 1347422 320 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855892|ref|ZP_04646181.1| ## NR: gi|238855892|ref|ZP_04646181.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 70 1 70 70 127 100.0 2e-28 MTYKLKIDDEAQTIQDVHVPNKEAFKIIKFSVLNNHMEGWKPNKVDIEELLDSYYCPDPE DIKVYEEILG >gi|313656766|gb|GL545251.1| GENE 1445 1347773 - 1349245 1709 490 aa, chain + ## HITS:1 COG:BS_ybfG KEGG:ns NR:ns ## COG: BS_ybfG COG3409 # Protein_GI_number: 16077289 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative peptidoglycan-binding domain-containing protein # Organism: Bacillus subtilis # 28 348 253 592 732 207 41.0 5e-53 MIFFFVAVPLAKKRYCLCIASSKIGEEVVAFRKFMKLAPETSTTADLTVIKGLLTSNGNT NRDSIALDTSKQLTDTDIANFKRYGFSVVRRYLTGSVGVGANKRPKNLTTDEIRRITNAG LAIFPIYEDGGYEVSYFNSKQGYSDAVTAIVNARNLGFPAGTTIYFAVDVDIQDGDIDGT VDPYLRAIHNVFVNCEYEAGVYGTRNVCLHGIEDGISASFVADMSYGWSGNLGFEMPENW AFDQFVEYTIGGTDIDQVAASGSDKGSKKFRLPSTSTKPISANEALDILGSLLNLTSISF NQEYPLIKTPMLEESVEFEESFTGTGGNPTFNISNGKLDGANLSGLLGPLFNNRQATVDA VFGKMGEMRLVSSISAGSLTIKTEAPVDGKVSCSIIYNIQKLENRLLTNELSVIFKFKVV PLDFVKPNPQPVSPSPVPQPIPVPEFDFKLLTQRIGEMLKGVAIVIGVLAIIGLGIAVIP QLLPAVVLAA >gi|313656766|gb|GL545251.1| GENE 1446 1349637 - 1350815 1093 392 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 1447 1350888 - 1351166 117 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855923|ref|ZP_04646211.1| ## NR: gi|238855923|ref|ZP_04646211.1| hypothetical protein LACJE0001_1424 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1424 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] # 35 92 1 58 58 116 100.0 5e-25 MLASPHLCCSHVNIQLSKNYVGFLFIKSLSRNRQMELPGFEPGSSISILFSYPPWKWINF DKYLEQLKDELIKHDIEKSNSVFSIDCLTINL >gi|313656766|gb|GL545251.1| GENE 1448 1351579 - 1351827 321 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472863|ref|ZP_07813351.1| ## NR: gi|313472863|ref|ZP_07813351.1| hypothetical protein LBJG_00378 [Lactobacillus jensenii 1153] hypothetical protein LBJG_00378 [Lactobacillus jensenii 1153] # 1 82 1 82 82 141 100.0 2e-32 MLYQNACQEFYKALRNGNVKRMSLGEYARRRHALHIRKPRKNPELTKDERLALISQARFF PKLGLTYERNKFGEVDRVYYIR >gi|313656766|gb|GL545251.1| GENE 1449 1352147 - 1353832 1955 561 aa, chain + ## HITS:1 COG:no KEGG:GALLO_0271 NR:ns ## KEGG: GALLO_0271 # Name: not_defined # Def: transposon related peptidoglycan linked protein (LPXTG motif) # Organism: S.gallolyticus # Pathway: not_defined # 38 561 124 662 855 87 23.0 2e-15 MLLAVNKPSTVHAADVDVKNNTNEAQSQKQPEQVVTKDQAQKDVNKAQSERDNAKSQADE AQKNVDKANQDVTSAQKQVEEATKANNSAKEIQKEATPEHINEVKANIVQQEQEVANKAK AQEAAQKEANKQSSNLADAQKDQLAEQVNNANNAVSEATNEVNDKQSSLSQARQQADAAK AELDAAQSTVNGLQTKVDSINVITMPKNYFLYNKYGMPDRVNTAVVDAAYNANSYKDDQE AKKEAVAHNKDGVTQLTDAQQKELTLWVAGILNDVRQQVGLKPNLVVTPASLAHTNYIAT HSTVPTFDHDTNAIDAADKLIPDLSMSSESIGTPWYAENMNDVKRGVYYHMLSMIFGDAD ANWGHAFQLTGDETSMLANTPGNPNPEYFGVSFRKDKGFIQFDSYTKWAVDPKEQKFEIP NYDGLKASLKDAKHELAVKQTSYGEATNTVNNAEKAYNVAATKLAQARQKQSSAKNAYEV ANANVTKLNNDLANLQSSLKSAQEKLNKLTESKSDKDFDLWKASDFYEATKKDLDGAKSD AANMQKEFDKVKADYDQAFAN >gi|313656766|gb|GL545251.1| GENE 1450 1353943 - 1354539 604 198 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855922|ref|ZP_04646210.1| ## NR: gi|238855922|ref|ZP_04646210.1| lpxtg-motif cell wall anchor domain protein [Lactobacillus jensenii 269-3] putative extracellular matrix-binding protein EbhA [Lactobacillus jensenii 208-1] lpxtg-motif cell wall anchor domain protein [Lactobacillus jensenii 269-3] putative extracellular matrix-binding protein EbhA [Lactobacillus jensenii 208-1] # 1 198 600 797 797 278 99.0 1e-73 MTDATAELDQAKKSADDLTAKLVEVKATLAEKETALTTAKFVLAKIEKEEAAKEAVKKAQ EEAKKVAEEKAEHTNFYKAGNDKLIDSKGQVMPSDYTVKENKVYNAKGEFVGVVSSKVES RVVAHAIAKVEAKESTTLNSNAFSSYASKHAKDHTVKASSVLPTTGSRDTNLAGLIGLAL ASVGSLLGLATSKKKDLR >gi|313656766|gb|GL545251.1| GENE 1451 1354646 - 1356469 2041 607 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855921|ref|ZP_04646209.1| ## NR: gi|238855921|ref|ZP_04646209.1| putative cell wall anchor domain protein [Lactobacillus jensenii 269-3] Cna protein B-type domain protein [Lactobacillus jensenii 208-1] putative collagen-binding surface protein [Lactobacillus jensenii 1153] putative cell wall anchor domain protein [Lactobacillus jensenii 269-3] putative collagen-binding surface protein [Lactobacillus jensenii 1153] Cna protein B-type domain protein [Lactobacillus jensenii 208-1] # 1 607 1 607 607 1187 100.0 0 MRVRKKKRLVLLFATGLTLCGLASSMGNTYVAFADDNGPQTITTNNAQKTWVSASDGKLH AQYDGQWVAGNGYHRINIIKEKGKSGRDSYIFCINFNKDSPSNKQLVKQYQANPAVQWLI TDFSKGHDKSFESIDGAGADYDLADYWLYQTAVHLVACPNDRSPYDGKITGDSVAHFAPQ IRDKVNRLVAEAKKHSNASQSEIVLNPAKLGFDPTTLNIGSGDFHGNKYEKNFKVPSSNM HDVQVHAVDSKNEKYLSGTRKNGSKVDFNNVNADDNLKVSVPYNDMTNTSDFSFKVKATG HWNKKAKVAWIYGVKDPGIQNVAKLGIKATTVDMKGSSDMTVHVKPSFGSLTFVKRGSGN NNTKILPGTEFVLTSDGFMERKTADNNGRVTFDNLPLGKKYHLKEIKQPDGQYNASYERD IDQLTGDNPQRQVDLGTVVNDKKHQPFEITKKNISGAGIEGAQFVLIRKDLGEPFNQISV EDAKKQALRQVNGELVTGHNDRQPYIATTDKDGHARFDNVLLDSTRRDYYAVEIKSPNGY ALGTTPVKLPNVGPTAPDVVTGEMTDNTQPIPTTGSDYLLIEATAAITITCAVGGYALYE SKKNKER >gi|313656766|gb|GL545251.1| GENE 1452 1356481 - 1356747 178 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855920|ref|ZP_04646208.1| ## NR: gi|238855920|ref|ZP_04646208.1| sortase, surface protein transpeptidase [Lactobacillus jensenii 269-3] sortase [Lactobacillus jensenii 208-1] sortase, surface protein transpeptidase [Lactobacillus jensenii 269-3] sortase [Lactobacillus jensenii 208-1] # 1 81 1 81 222 154 91.0 1e-36 MKAFFKTKSGKLVAIGTFLVLLIAAFCWHQTYQNDQILDHKVNSAVTMKTNRAALKEEKD IKPSTKNELIRNKRRHCNSGLISILTDI >gi|313656766|gb|GL545251.1| GENE 1453 1356708 - 1357148 214 146 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1256 NR:ns ## KEGG: LDBND_1256 # Name: srtA # Def: sortase, surface protein transpeptidase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 11 145 96 216 233 84 38.0 1e-15 MQLGVDKYPNGYLIIPSIGIRLPIYNRANNYTLALGVGKSYYLDSEFGKGNFCVAGHDME QPGILLSDLHRINLGDQIILTGYNGQRYKYRVTSKKVVPPTVKIVDGKPVQGSAFYMPKD QEKPIVTVYTCANGGVNRLVVQGELI >gi|313656766|gb|GL545251.1| GENE 1454 1357168 - 1359396 2335 742 aa, chain + ## HITS:1 COG:no KEGG:CPF_0123 NR:ns ## KEGG: CPF_0123 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: C.perfringens_ATCC13124 # Pathway: not_defined # 5 730 1 627 634 249 30.0 4e-64 MNNSMKKGFRKSLATGGVVLSLCGTALVGVQAAVMIQHPSIVKADQVAPSTTNITVHKMM YDTKDAKFFEQNKIKNDGTDKSKELPDQITHYNPNTMGKVEFTLYDITDVVNEKFNDGKG LTGWTNSAADQQAMNGRVKYISESIQKSFNNAFDATHGVDPAKLTQEMSKNEYLAKAQKV ATKAIDSNGDITFENVKAYDASKPQKYHYYAAVETKTPRGFVTPPSEPIIFVNPYTNPDG TGFLSTTHLYPKNKTQKLNFDLTKYVLWNADKDGGKKVPLAGAKFQLYRGEPGKGEKVGG VLTTDSKGKVTANNLIMGKYYFVEEPSEVAGDEADDQARAAISPIAKNDVRNKLTFEIGE DGIDPTKLQGSLVNYGPTNEEKKLTNGIGPNQSLHRGDFAHFNSKTVIPQNIMGSAWQID ATGTNAMTEPYHTFFTRDEPEKNLKDVPAERHLVITTPDGKKLEEGKDYQILNGSDSKWW VNYVVKGLSEADAKKLQDAANSHDNKKIEDAVKGLTTGSVSDLVAAQAGKKLNYEYDEIL TDDTPLDKRIVNTITLGWNDGSGYKEIHRHDDTVTYGVNFVKESSDFMGWGIAKQKLEGA QFAVQDLKTGKWFNGFKENGKKGEKDIDWVDNYSDVKAGILTSDKEGKFALQGFSEGDYK LREVKAPKGYQLMNETVNFKIGPHTNDQTLSNPIEIKNDEKTSMPFTGSQGLLQLGGILV AVVVVGGGTYIYVSQKKKKADK >gi|313656766|gb|GL545251.1| GENE 1455 1359396 - 1360232 747 278 aa, chain + ## HITS:1 COG:SP0466 KEGG:ns NR:ns ## COG: SP0466 COG3764 # Protein_GI_number: 15900382 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pneumoniae TIGR4 # 67 269 58 260 279 158 43.0 9e-39 MKKGKKPLTLVIWGLLCLTILGLSTYPFLNDYFLAQKQEAEVARSERHGSSYLESFYKAP KTEKPVDPFANSATKKKNKNSVDVAEAELKPVAALSIPKIKEVLPVYMGTSQTALDNGIG VLENTSLPTGGKGKHSVLTGHSGLSLNRLFTDLPKLKKGDKFYIKVNKEIHAYQVDQIKK VLPNNLKYFKVDPNQDYVTLVTCTPLFQNTHRLLVRGHRVPYHAENINADGGLTSLGKAA IVAIVVTSAMALFYWFTHRKNRKKKKVKKVYLHEKRKK >gi|313656766|gb|GL545251.1| GENE 1456 1360213 - 1361229 1057 338 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855917|ref|ZP_04646205.1| ## NR: gi|238855917|ref|ZP_04646205.1| hypothetical protein LACJE0001_1418 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1418 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 338 1 338 338 311 100.0 5e-83 MKNARSKIMSAAMLSANVLTLAAPAIVHAAEQPSASTQSSIVQNKKEDENKKTDDTKTEK STDNSSVDVKAEDKKADPDNPQSLKEQTMVTRKVIATNEKDLNSDSLEGVNGSKFTVYDV TDLMNTIIKEKLKVDDSSPSDKQVDQALKEADNSNSQEEKSEADKSDSEEFDENSTEDNA NKTISNSTNNKSKIPSAYKSVKSSSSDAKTEKASTQAPEADLDQTEPKSSNSETSSSKSS SSTTVDDQSKSSVEKSKNADDKSESDKKSEEEEKLVAKVEQMRKDDTIRKEVASRAAKLD PKSMKTFAQVTTEHDKTSNKDGVARVKVPIDGKYHALL >gi|313656766|gb|GL545251.1| GENE 1457 1361253 - 1361552 370 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855916|ref|ZP_04646204.1| ## NR: gi|238855916|ref|ZP_04646204.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] serine-aspartate repeat-containing protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] serine-aspartate repeat-containing protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 99 1 99 99 160 100.0 3e-38 MAKNSDPIVILTPITDKDGKYSPEFTIYPKSEKVLPEKTPENKPENGKTSEQNQPGQDQA KGTEGQKPTVTDAKMYQTGKARIHGFLNNLVEQIESFFN >gi|313656766|gb|GL545251.1| GENE 1458 1361641 - 1361916 212 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855915|ref|ZP_04646203.1| ## NR: gi|238855915|ref|ZP_04646203.1| hypothetical protein LACJE0001_1416 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_3156 [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1416 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_3156 [Lactobacillus jensenii 208-1] # 1 91 1 91 91 144 100.0 3e-33 MTITNLTKEQKKIISDWRKKHNIDEKARLTQKCTELGTSLIKQEKGPALDWAQEQLDLED LFSATAEANKLYHKDRTNNQPFNKDFKPNDK >gi|313656766|gb|GL545251.1| GENE 1459 1362101 - 1362376 428 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855914|ref|ZP_04646202.1| ## NR: gi|238855914|ref|ZP_04646202.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 91 1 91 91 135 100.0 8e-31 MNFLKLKLMTGANVWSQVNNGASYASTNMTNTARFIGVAVIVAAGLFWMFGGQAAQKAKA MLVAALIGGAVLLLAPQLVPTIWQMFGGATF >gi|313656766|gb|GL545251.1| GENE 1460 1362936 - 1364549 1581 537 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855913|ref|ZP_04646201.1| ## NR: gi|238855913|ref|ZP_04646201.1| hypothetical protein LACJE0001_1414 [Lactobacillus jensenii 269-3] putative viral A-type inclusion protein [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_1414 [Lactobacillus jensenii 269-3] putative viral A-type inclusion protein [Lactobacillus jensenii 208-1] # 1 530 173 702 819 785 99.0 0 MVDTPKQTQPKANNSNEESQSFEDNESLPLEDSLPEPESVSNENNDIQPTDDLDLPDPTS EFAAQNQERAAPAQPAPVPTELVVTPSSKFENPEDILSKIPDKYNAESFDLSVIKAQLGY KNNPTDKFDEELNRTIDEVLKDTGLSSLQSEFDITKSNLENSLIDALTTKYNELTKNTVE NIVAVRLKDEINQLEQDAQNNKQKNQSNMEQACNNEEARLTAQDVDKLDQFKVQLQNEHQ ESMRSFKINQQKELDTLNEKIDTRLADSKNDLKQREHDKVVNEINRNLSDTRVELSNRFN QGLKNEFTKSEENFRVGLDGAISSIQEKRDEINQKREKYQFAQAKLAQKQKENELKAREL DQKDQELALTKKQIEGLPDAIAAAINKTQQQSPNSQLMPFYQVPGNYYYAQPAGAPQIPN NSTPPVDNTEFQKLKDQYDALEKKLTEVQITAKDKEIEDAKKELATTKNSKKHWQIGIIS FLAVATLSSVLLFGYNRNNHSVSSTKPSVVLVKNSSAEKSNKKTSSPKSKILLQRRS >gi|313656766|gb|GL545251.1| GENE 1461 1365061 - 1365381 85 106 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855912|ref|ZP_04646200.1| ## NR: gi|238855912|ref|ZP_04646200.1| conjugation protein, trag/trad family [Lactobacillus jensenii 269-3] TraG/TraD family conjugal transfer protein [Lactobacillus jensenii 208-1] conjugation protein, trag/trad family [Lactobacillus jensenii 269-3] TraG/TraD family conjugal transfer protein [Lactobacillus jensenii 208-1] # 1 106 66 171 171 206 99.0 4e-52 MVIFVNAGRLTFQTISRPGFNFFTQKIDDEKIFAQAINIAKYPLPFKWLIAILAISFFGG FGLSKRLKFATKDVAYGQKGDERFTTEKELEKQYPIIPDHDERGDE >gi|313656766|gb|GL545251.1| GENE 1462 1365381 - 1367444 1453 687 aa, chain + ## HITS:1 COG:CAC1969 KEGG:ns NR:ns ## COG: CAC1969 COG3505 # Protein_GI_number: 15895240 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Clostridium acetobutylicum # 58 283 162 360 591 61 25.0 7e-09 MPAAISRNYTSYTYKPSFEGYGGIPISHVNKWVRAKKFPFIRKKGFYFIDRSTSHNIIVG TSRSAKTQAIVIPMIDNLSRASKQSSIVVNDPKGELYAASSETLRRRGYNVYLLNLADGS QSMAYNPLQLIIQSWKRGDIEGAMQLVNSLTYTLYHEENAGANSWVYEGAQKAVNGMIIA LIEYCIKHNMTEKITLNNVIDMVNELGTVDYATDPDDPYDKSNVLDEYFKHLKQGSIAKR EFGSTSFSGDKAKGSIYSTIVQKLSVFSMPKMARMTSMNSLELKSIGFPKYLDFEVDKKL ANKRIQILFLNKKKELINKYTVKVAFGGFVQYNFDDKLTDGCYMIVKHRQQFSSYKIKID ARTEKTELQPLQSKMPIGNLRMHYSDRPTAVFMKIPDYDSSNNALASIFISQLYSELAKQ CSYVAGGKTIRRVHFIFDEFGNMLPIKDMDQLMTVSAGRNMLFTLIIQSYKQIYAKYGKD KGNTIKENGQNQILIKSTDMDTNKEFCTLIGNKTVEGNNVNKSVMNMAQSINVSADSVPL LLPERIKDFMIGESVVLRPLYRTDLKGRSVRPYPIFNTGKTKMPLAYTFLTDEFNPGTSP DLLQIDAPHAQLDLASLAVDWRDWITWSKDALSAYDAHQQADANKQDSMGSDDTASGAKA KHENEVDDLPNGAETDAILQKWLLKDK >gi|313656766|gb|GL545251.1| GENE 1463 1367423 - 1367629 187 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855911|ref|ZP_04646199.1| ## NR: gi|238855911|ref|ZP_04646199.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conjugation protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 269-3] conjugation protein [Lactobacillus jensenii 208-1] # 1 68 683 750 750 147 100.0 3e-34 MAAQRQMNQTEALREFWQEHKDELGEDAERFRLIIDHHGGRSDYMQFLVNKPDLLNEFME LWQKVNSE >gi|313656766|gb|GL545251.1| GENE 1464 1367677 - 1370802 3158 1041 aa, chain + ## HITS:1 COG:no KEGG:BACI_pCIXO200140 NR:ns ## KEGG: BACI_pCIXO200140 # Name: not_defined # Def: hypothetical protein # Organism: B.anthracis_CI # Pathway: not_defined # 51 748 64 729 985 176 25.0 6e-42 MGTKLLILAQSYIFTGWIDLGKAISDMFGGGGDSKEDLTNAANSLDNIRPYLHFQDAVGQ VFNWIKWGIIKAFYNLANGAEDLATHSLDFSKLLSDAGLKDWIQGYILGAAAAVMIAVLV WIGIKMMLGKEKTPVQNIILQAIIATFLMFNLQPLTNWVVDQSSNIYKAEVTDGNTSSIP FDIIKGNTNDIAYLVYNNWPDFKTKGSGKIKTQSDEDYGHNGWDNKNGKKSFDLLSATNL ASAITPDTVDSMEKTAEKLQKDHHWKSLKFKPKYLKYQLIDGGDKPAAVKISKSSVPFSN SYSGGYQRYTVAFLPVVVSLFALSLAFAFITYVVVKSFLDLAIMQVLALLIFSTDLDSGA KTKAAINDMFTAALTIALQGFELAFYRIVVNFLTNADMGPLLYCVAMIAATAMLWTGSQK TAKFFGVDTGAQKGWAMGAIVANQTAGLVKKGAGLARGTGHLARKGFDTTESALTGLDAA HKARENGKTWGQSLRNGANAAHANSQLKKGFMASGGSRHQWNKASRSGLVPTTVSEMADK MASNNGLTDNEYNSLRQASTGKPYTQFANEHAEALKKSGLRSAIDNAEQLKHLSMPDSDT KGKTIDARRELNDALRSGKHIMNDPNASGEQQKDAAQRLTIATSNLKKAANVDDINDNDA NKINPANQQVEKPFDKAKPEATTQNKSTASNENISEHNDLPKVNQEIIPGGDTKKDVVAQ GGTEQLKTAKEEGKIQKIDPNSKPAESKKSNPISSNDLPKVSQEIIPGRDTKKDVVTQGG TEQLKTVKEEGKAQKIDPTTQPDNGTKPTITDAMRATENGHKVIPGKDSKKDVITQGGTE QLKTIKEEGKHVQIDPNTPSSPDKISENLTHEPQNSSTQTIQGSDTKTNIKEQGGTNQVL KSSEKPINSVTTTQPSVAENTTSNYEQLVPDQKQQVHVTQEGPGQSIEISTTPSNITSTI KETSAEYIPASNISSTNPNAPTIESFLHSKKHYIKKFRQDVTTEINKDQINHTIEDVTKR NDFKSNFKETKPIAPKPRKDK >gi|313656766|gb|GL545251.1| GENE 1465 1370805 - 1371128 351 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855909|ref|ZP_04646197.1| ## NR: gi|238855909|ref|ZP_04646197.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 107 1 107 107 202 100.0 8e-51 MDSYQKLVMPKKTKYRLTVVYVPLIDILTVLGFIALGLHIAKISNLPAIMQFVLLGFSAL TGIAAVASTTLCYGVPNWKVLLLVLKQDRNKYYPLFVRGEENGKKDN >gi|313656766|gb|GL545251.1| GENE 1466 1371109 - 1371708 441 199 aa, chain + ## HITS:1 COG:no KEGG:pBT9727_0009 NR:ns ## KEGG: pBT9727_0009 # Name: not_defined # Def: hypothetical protein # Organism: B.thuringiensis # Pathway: not_defined # 60 196 71 213 224 63 29.0 5e-09 MGKKIIKKKQSLFEKIFKAKRASPSGLSQKDIKSMLDFLGYRACTKNGRLYLKDGSVSRY LKVEPTDLFSLDDDTRLKYLTAFTMFNRVFTPDYKIVILSTRIDTSQQQVYWRKLRMKSM SDNTAQSDTRKQLQRYYLSKVINLEREADSYSDINFYIQVFADNKKELKSVVKSAKFADQ GYLHLREINKKKLEKFFTG >gi|313656766|gb|GL545251.1| GENE 1467 1371742 - 1373769 1609 675 aa, chain + ## HITS:1 COG:MYPU_3830 KEGG:ns NR:ns ## COG: MYPU_3830 COG3451 # Protein_GI_number: 15828854 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Mycoplasma pulmonis # 71 586 297 768 853 90 22.0 1e-17 MSVLESLQNLGDKILHRESTVNTQIKEPQIDPTQVINDAGIKRLLRDGYDVEFLVKTQPQ GGITFDDDHAIGDGYSACVNILQYPTDPNILWATQVMLNDSTVAIMDVKTASSERLKSEI NRSLQELGDQATNGRKATSMSDAQDNYQDLMDLSSSISRQGEIPKKIVSRIFVYAPTIES LQEKIRDLIKSLKGNDFRATVYNFTQADQYKSMTQKLTKQERSFAAVPEQIMPARTLGFG NPFSFQSLKDPRGIPLGTTSAGGAFIFDQFRSTNTRRSFNMMVLGKMGAGKSTLLKMLTE GSFARNMYWRGIDKSGEYVRLVRALGGVVVNLDGSEGMINPLEVMATVTDKEGKVVDEVA SFMQHLDKVSVLFKMVNRDFAEIEIQDFKNILRSFYIYYGLLPKDWQRNPGKVRLTGKDP QDYPTFSEFSRYVDKCNSEEYLSAIHASPQRRRTFEKIKIGVEAMIDNYGQMFDGHSSMK DLSREKVVLFDTSTVANQGSVYQAQIFSTLSLIWNQALQNGRRQNYLLDNGVITNDEISY FDVVLDECHNIVNYKNMNAVTYIKDFEREMRKFNAGIIFATQSPEEMVPDKVNSVEQSDL KVVFDLCAIKVMMAMENSQLAKIKKLLGDSLMPSDYSEIPSLTTGNAIWTLGSGQRYKVT NNPDPEQLKLFDGGQ >gi|313656766|gb|GL545251.1| GENE 1468 1373769 - 1375073 1188 434 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0799 NR:ns ## KEGG: PEPE_0799 # Name: not_defined # Def: Enterolysin A. Metallo peptidase. MEROPS family M23B # Organism: P.pentosaceus # Pathway: not_defined # 233 432 349 532 986 109 39.0 3e-22 MINNKKNKDPFMRMIRRRLCRHSLTIGLIVGGVTACIASFIIFIAVIYSVIIGVKGTCAP DTSNPIAGQVSGATGEWTQKGSKEYNTAKTIFDRLTKDLGVSGAAAAGALGNIAQESKFN TGAVNASDNGAGLIQWTFARTTALKSFAEKKGKSWTDLDVQIEMLENDMKNQAMWTSGKF KDNSLKTFGTTTDPKEAAERFYISQMEAGGGYASDPDGSGTKRIANAETAYKLFNGSSVK ADESKLGSTGGKNTNSSSNSADSDETNCVVVSDGKWAWPFKSIKGKPQISGAQLFGNVGG GRKNGFHDGLDFGTIPYNKQDILAIHDGTVYKIDHQGSTQSDLGWFVCVKSDDGYYEVYQ EFAFDPGDKDKAISVKVGDKVTAGQKIGTLDSSLSNVSHVHIGVSKKEIMAAEAHAFSND GTWIDWSKLIEGDK >gi|313656766|gb|GL545251.1| GENE 1469 1375073 - 1375693 559 206 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855905|ref|ZP_04646193.1| ## NR: gi|238855905|ref|ZP_04646193.1| hypothetical protein LACJE0001_1406 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_3146 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00361 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1406 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00361 [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_3146 [Lactobacillus jensenii 208-1] # 1 206 1 206 206 339 100.0 9e-92 MEFNKTKKENNNEKAFRLTLWVLSILSVIFALVNIPKQGNISEIRQETRNTAKQIKVARQ QAQNNSPLFAANNFNLTDQEKTATDRLSQGLQTTFGGLKTENDFKTQKSKIQSLMGKKFA NFFVVYNPETSYLNNNEVHVYFNNVKDIHHAKVFAYTQYEVKKGTGSEPLSIAFNFDYDL TTQKVNSYKLVTFSTSDVLKNEGSNQ >gi|313656766|gb|GL545251.1| GENE 1470 1375693 - 1376337 608 214 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855904|ref|ZP_04646192.1| ## NR: gi|238855904|ref|ZP_04646192.1| hypothetical protein LACJE0001_1405 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_3145 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00360 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1405 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00360 [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_3145 [Lactobacillus jensenii 208-1] # 1 214 1 214 214 370 100.0 1e-101 MEAWQRIQIGVATSLIVLSIGTGTAFKSKQAKYDADLNKAQVALNQKKRQLSTIQSDNES ILLDQKQNSSNQSTSDSVRQVMLNRAINTRAIKVAKALFNYSGSKDYLKRQNKVSVLLSK KATVDPALFPKHDLEQIKGQKIAGDYYSSSITNGLEDSDGNVPVFLKVHYGTYLNDKLIA SPTEGFNLTYNTHSGQFTSLKSVGKFAENTEKND >gi|313656766|gb|GL545251.1| GENE 1471 1376385 - 1376606 92 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855903|ref|ZP_04646191.1| ## NR: gi|238855903|ref|ZP_04646191.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] putative Thioredoxin [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 269-3] putative Thioredoxin [Lactobacillus jensenii 208-1] # 1 72 16 87 150 138 95.0 1e-31 MIFFFTLLAFGLSIEGYHLRNTAIENNRVQVSLKKNENAVVLFYKDDCSDCKAIFDRVMV EKDFGGTNINQLI >gi|313656766|gb|GL545251.1| GENE 1472 1377037 - 1377270 289 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855901|ref|ZP_04646189.1| ## NR: gi|238855901|ref|ZP_04646189.1| hypothetical protein LACJE0001_1402 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_3142 [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_1402 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_3142 [Lactobacillus jensenii 208-1] # 1 74 1 74 292 136 100.0 5e-31 MPKTNKQKELKRHEKFRKRKAFLSAATIILVAFIGILLSPFYMGAGKVSLTRNDTTDVAT NAKLYRMSSTFNPKLVI >gi|313656766|gb|GL545251.1| GENE 1473 1377378 - 1377914 558 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855901|ref|ZP_04646189.1| ## NR: gi|238855901|ref|ZP_04646189.1| hypothetical protein LACJE0001_1402 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_3142 [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_1402 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_3142 [Lactobacillus jensenii 208-1] # 1 178 115 292 292 281 100.0 2e-74 MGNQARFVSTRFQKINDHYFVIEAKDIQPGFNVIRYDVVPELINSKVETDGFTKNTLIKM YARENKIKLDTNLKPKAKSAYAKNYLAMLIKTYTKKISSSQKKIANAQATIDRDQELIRK MNRKKAIASSSQKEDIESQISDYKQDIDNQTQIIKEAKKTIKEQKENIKATQNGAINF >gi|313656766|gb|GL545251.1| GENE 1474 1378162 - 1378356 207 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855900|ref|ZP_04646188.1| ## NR: gi|238855900|ref|ZP_04646188.1| hypothetical protein LACJE0001_1401 [Lactobacillus jensenii 269-3] Pb-fam-3 protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1401 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] Pb-fam-3 protein [Lactobacillus jensenii 208-1] # 1 64 1 64 64 72 100.0 9e-12 MDLKIKNVDPKDIYVIDKEIEQINKKNHTKISRSKFLRDLIKKYSEQKIKNKLNNISNGE NFKQ >gi|313656766|gb|GL545251.1| GENE 1475 1378689 - 1378943 255 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855899|ref|ZP_04646187.1| ## NR: gi|238855899|ref|ZP_04646187.1| hypothetical protein LACJE0001_1400 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_3140 [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_1400 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_3140 [Lactobacillus jensenii 208-1] # 1 84 64 147 147 121 100.0 2e-26 MVENMEAYQDAVDKLFFLLITGDTEEALNLSEDLSLKTDKNVRRKINLISKILDAIIQED KTKAKNLNNELKERNENYDTEEGI >gi|313656766|gb|GL545251.1| GENE 1476 1378921 - 1379304 506 127 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855898|ref|ZP_04646186.1| ## NR: gi|238855898|ref|ZP_04646186.1| hypothetical protein LACJE0001_1399 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_3139 [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_1399 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_3139 [Lactobacillus jensenii 208-1] # 1 127 1 127 127 229 100.0 4e-59 MTRKKEFRTQLSDEEWKLINEIREKNPAIKTAHDVLVLFVHDHLACKNLQTELKDLKNIN FNLQTLMEVTGELMVKGRGFQDDNGLPITNVQVGSQYISIKSAKQKVKKEIAAGQINKHW HKAVVNE >gi|313656766|gb|GL545251.1| GENE 1477 1379297 - 1379584 164 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855897|ref|ZP_04646185.1| ## NR: gi|238855897|ref|ZP_04646185.1| hypothetical protein LACJE0001_1398 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_3138 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00353 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1398 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00353 [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_3138 [Lactobacillus jensenii 208-1] # 1 95 1 95 95 160 100.0 3e-38 MNKYILKRMEAMIVKHVRLSILFLLIACSFYFLHAEFFNQYNFYAWYWLLLVAGKLFEYL GIIILATPIFEFVNLRRELKKNEQAKKRNQKISGN >gi|313656766|gb|GL545251.1| GENE 1478 1379666 - 1380262 444 198 aa, chain + ## HITS:1 COG:no KEGG:pBT9727_0080 NR:ns ## KEGG: pBT9727_0080 # Name: not_defined # Def: hypothetical protein # Organism: B.thuringiensis # Pathway: not_defined # 2 198 3 204 518 68 32.0 2e-10 MKRPAIILTSKFSTETNGKSFGKYLGYMARKEALESKEYLTEQERKEINRVTIKARELDI HGKFRKVFDQSKDELVNKQAKKLLNNKVLSELNDDQFSKYLGYMARSSALATIQGKRELT PQETQELKRVNEAANKLTDLKVTKDKLAVGFFTSDMDQVHLKDFQHIRDQLTKAQANHSV LWQDVISFDNDFLVKKEF >gi|313656766|gb|GL545251.1| GENE 1479 1380277 - 1380930 184 217 aa, chain + ## HITS:1 COG:no KEGG:pBT9727_0080 NR:ns ## KEGG: pBT9727_0080 # Name: not_defined # Def: hypothetical protein # Organism: B.thuringiensis # Pathway: not_defined # 2 178 212 388 518 97 32.0 4e-19 MLDEQAMRHASQEMMKTFQAKMNPPLYQPYWMASIHRNTDNVHIHFATVEAINQRPIIER EDKFGNLVKQPKGRRPQKVIDQMKSVFTNTLINTSDLTKEISRNRDQVRANVFQHFEKQK ENPDFQAMINQFMEHLPADRRNWNYKWLEKNDANGKALLDIITETLLKDDQDYRTYKKIF LIIKIRDKLYTVFQNVKIKIIKLINLKIFADEMEMQF >gi|313656766|gb|GL545251.1| GENE 1480 1381008 - 1381274 270 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855896|ref|ZP_04646184.1| ## NR: gi|238855896|ref|ZP_04646184.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 88 449 536 536 145 100.0 1e-33 MYFQTLLNKAKTQKSSSGAGGRVAPARRNVPRKRNLYLFTLSKKRIEKLKKEISHQTRKE MILEKGHVSLDKRKALTEYEKIQKAAEL >gi|313656766|gb|GL545251.1| GENE 1481 1381306 - 1382700 1366 464 aa, chain - ## HITS:1 COG:SPy0198 KEGG:ns NR:ns ## COG: SPy0198 COG2801 # Protein_GI_number: 15674400 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 196 462 8 267 268 239 52.0 1e-62 MSKLTKKDKLNIYKEWTIENKRSAYLSKKYGIGSASIKYLVSLIHRHGIGILDKPYTYYS AQFKLEAINRVLVNHEAAYSVSLELGLKSQGILINWIRSYKENGYNVVIKRKGRQACEEQ RAREIEERKRRIASPEFKAYCRERIYKKIGCLGSKEKKPTKIEIAQAVRELRLELGLGVK TILLILNDPNNNLPSLSRSNYYDILKREDQDEIKHHNLIKRIKEIYFELKARYRAPGYRV IADHLHNEGFKVNRKTVYRLMRKLNLIGYRMKRRRRYDSFEGEIEGRIKPNLIKRNFFAI RPNMKWYTDITEFNLRGQKLYLSPIIDGCGRDIVAYNISRRPNLQQVMTMLDDAFKANHS LNGLVFHSDRGWQYQHKSYQYELARRGIEQSMSRKGCSPDDGLMEGFFGILKREMFYGKE DNYANLNELEQAIKDYIHFYNYERTKTKLKGLTPIQYRNQSLVA >gi|313656766|gb|GL545251.1| GENE 1482 1382794 - 1383126 197 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472893|ref|ZP_07813381.1| ## NR: gi|313472893|ref|ZP_07813381.1| hypothetical protein LBJG_00350 [Lactobacillus jensenii 1153] hypothetical protein LBJG_00350 [Lactobacillus jensenii 1153] # 1 110 7 116 116 191 100.0 1e-47 MNQKIPNYINQLKKILNVESIDIDTITYTPASSEPEHEIELPIYTCSNNDETIHIITDFQ GKVFDVFLPYNINGKQLLKYSKVLKILSKNKSDKTVITESLEQALYLANF >gi|313656766|gb|GL545251.1| GENE 1483 1383661 - 1384839 1093 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 1484 1385383 - 1385799 214 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855330|ref|ZP_04645643.1| ## NR: gi|238855330|ref|ZP_04645643.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 269-3] # 1 138 138 275 275 236 100.0 5e-61 MILLRTSKNDGIVPASLMNLNVRTLSEQLKRVPQNTILGIFQESNDQVTYLDENNKKRNV VLGRSASAIDLNHEYIKTPQDALSLASVLNKSISAYAEKQTINTDDLGRQLTHEKAAPNH KEATKKAALRKRFDRERE >gi|313656766|gb|GL545251.1| GENE 1485 1385906 - 1386937 951 343 aa, chain + ## HITS:1 COG:BS_mtbP KEGG:ns NR:ns ## COG: BS_mtbP COG0270 # Protein_GI_number: 16079084 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Bacillus subtilis # 1 337 4 433 443 225 35.0 1e-58 MNFIDFFAGIGGFRSGLEKAGHKCVGFVEFDKFARKSYQAMYDTKGEFTGYDIRQVRGKD LPTADIWTFGSPCQDVSIAGQQDGLISGKRSSLFFEIIRLLKERTKNQQEIPTYLFMENV KGLLSSRNGRDFARVLIEMDSVGYDVEWSLINSKEVVPQNRERVYLIGHLRGKCSNKVFP IQRQSQNSIKQSKIKQVGNYRSNKSFGNNPQTGRVYSVHGLSPTLNTMQGGDRQPKILVE AVLTPDRLAKRQNGRRFKNAGEPAFTVTATDKHGVLIKKDKELSIRKLTPLECWRLQGFT DEQFFKAKNAGLSDNQLYKQAGNSVTVPVIETIGYKLKGNINE >gi|313656766|gb|GL545251.1| GENE 1486 1386930 - 1387733 495 267 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472897|ref|ZP_07813385.1| ## NR: gi|313472897|ref|ZP_07813385.1| hypothetical protein LBJG_01762 [Lactobacillus jensenii 1153] hypothetical protein LBJG_01762 [Lactobacillus jensenii 1153] # 1 267 1 267 267 507 100.0 1e-142 MNKKEREIFKQKVEQYPVIINRENSIDGKAQLLHFKDRVKDLDLNLIFGSDLSHSKYKNI HNDSLYLIGKQLQKPFYLGNSLEEVKQEIMADGEAEDYGPRYMQQYGSGILTNKKVGRTT AIYAHEEFDELPTDEDAISYAKDFYKRPDISRFSQPTKDRDVERANLSTSSVNSELSYHE THSNDSIAFQQKEAIDKYASTHQLPNGMKFVNLEKLLKNGDFLKIHGCHRIDTICSIMYT MAPNTGSFSLKMGKSQFTIFQKRTYHD >gi|313656766|gb|GL545251.1| GENE 1487 1387840 - 1388715 783 291 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472898|ref|ZP_07813386.1| ## NR: gi|313472898|ref|ZP_07813386.1| putative ATPase AAA-2 [Lactobacillus jensenii 1153] putative ATPase AAA-2 [Lactobacillus jensenii 1153] # 1 291 35 325 325 466 100.0 1e-129 MSLDLSVIENDYYTPDKTIDDDRAKANIVLKPTSIVKGLEWNQKQDIYYYNPKNKKEPQL IGKDLESFADYLNEPAKIDGLSTTLVDINREHFAKTHQDQVKNIQRNLYIGRDKNANEDL FKKYLRKYDVYINPSKKDFEDANVLLGLSKDTNLNKVVEKMEKPKQEKAIGYIKANSKKD KATPNLARRENAKRLLEEYGFDATEENIEKMAKNIENEDKFNKQLKIKKSGLESVKLELA DPEIRKNYAETYGKKTEIDKKQNRYFWKNQSIHNGSCNVIVKKKNMKILKD >gi|313656766|gb|GL545251.1| GENE 1488 1388667 - 1388975 202 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855332|ref|ZP_04645645.1| ## NR: gi|238855332|ref|ZP_04645645.1| hypothetical protein LACJE0001_1431 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_0390 [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_1431 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_0390 [Lactobacillus jensenii 208-1] # 1 102 581 682 682 162 100.0 5e-39 MQRDREEKEYEDLERLGFPSFYQGEEKQKFEKLSQKIPVHTIRKLENAYVATRDIYFDDK TSEVKNISLVSKTTKAKIEKNSKKYLALEHAKKASRNKKLER >gi|313656766|gb|GL545251.1| GENE 1489 1389098 - 1390837 1773 579 aa, chain + ## HITS:1 COG:BS_yveB KEGG:ns NR:ns ## COG: BS_yveB COG1621 # Protein_GI_number: 16080499 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Bacillus subtilis # 37 542 43 477 516 105 27.0 2e-22 MKLTNTLLSTGALVALGLGMTLTTTTVHADSVTSTAHESIYHLTTKDGWSNDLQTIAWNS KGNYYDLYFLHSKTSDDPNEAGDQNWYHTTTKDFVHFTPQNEAIKADGPEAPYTWTSAWT GTVLVNNGQIAGVPKGAQVAYFSGLEKHDGGSQNIWGAWSSDNGKTFSHVLNGASPVIDH SWNFTSHNKVDERDPSVVYWHGKMLMYVAEGNEIGVYQSHDGIHCSKADPHGASKVGMGT YLRGINTQDSTPVECPALRTMKMPNGKTKQVLFFGAKAPHAGQTTGTYYIVGHLDQNGLF APETDAKRLDQGSDYYGANFSGSSNLAEASRAIKSMGWVGNWSYTANGIHNDESANSAFT KHLGSYSVARNLELGNDMSIKSTPIVGQGKEVKHYNSVSKDHPINGINASSNRPFTNGRD TNGTIYNLLDVPSLSVNKLYNLHFYNTKSSYRGRIYIDIWQGNDYVRLNYDPSNGLYNVK TRSGELDRGRNGQAASSYYYDGLLGNGNGYIADSGVKNQHSVDLKVLTDKNSVEFFFPNG QSYTVARFNTSQKQDFKIFTEDPTNGNKVDVTQANLSQN >gi|313656766|gb|GL545251.1| GENE 1490 1391039 - 1391200 198 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855334|ref|ZP_04645647.1| ## NR: gi|238855334|ref|ZP_04645647.1| leucyl aminopeptidase [Lactobacillus jensenii 269-3] leucyl aminopeptidase [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] leucyl aminopeptidase [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] leucyl aminopeptidase [Lactobacillus jensenii 208-1] # 1 53 1 53 53 79 100.0 1e-13 MKKFNEEKFAEYLFNLVENFKNPTSDYDEGAYDTLTRICKEFKVDHYEEDIKN >gi|313656766|gb|GL545251.1| GENE 1491 1391224 - 1391496 277 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472902|ref|ZP_07813390.1| ## NR: gi|313472902|ref|ZP_07813390.1| conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 1153] # 1 90 1 90 90 141 100.0 2e-32 MTDQINTPNKIVDLMKQKYGLTHISKTITVTSNDTLYTLYRKTARYLYKNGVENGDYTDK DEVLALSHKLDIKENEIKKLIVLNWLLKKK >gi|313656766|gb|GL545251.1| GENE 1492 1391706 - 1392014 124 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855335|ref|ZP_04645648.1| ## NR: gi|238855335|ref|ZP_04645648.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 95 162 256 374 176 98.0 5e-43 MPDTDTTPWITRANNRNEKVYFTAYSRDLLIGYDKLNIDLKRNFKEKSLEPLNELIDNLT DPKNSGSSNEYLFSPDAYYEIFAKQAHMPTYEEWQIHQKKAY >gi|313656766|gb|GL545251.1| GENE 1493 1392283 - 1393695 1229 470 aa, chain + ## HITS:1 COG:no KEGG:LSL_1826 NR:ns ## KEGG: LSL_1826 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 6 222 196 432 1229 158 43.0 5e-37 MERLTNDLSKHFKKVEIDNDVDLEELKKFIPELKQTVSALPHAKNGIKPILRFRKLKNHR ALGMFTPINNTLAVDFRYDKKTKETGLQSFVHEYGHFLDYNYNGRSNLPLSINKNFSDSL QSIQAEIGNSSTALTPKESTYLKTPSEVFARAFETYASNLGLNNSVIKDKEIYNSKIDIK YSTFTPDIKKKISSYFDKQFPTIKQKIRQLSQENEKVVENEKPKIYRYYSLFRPINPGTY PMKNFKPLKVENFDERKDVGGNVKAWGYVEYLNKLSLEEQQNYDLINEKPIKVAQAIQEL NQKKRLNLTDVSVNSSNPSQVEYTVWGNAESANKHKGLFATLNINTKEIDDTNESSIIKN TQKTLLSQQNALSKSKFYDSKFIVAIKSNINKLQNIPDQQSRTQKEKGLSKAEMHRQAFL ISRGRMQPTQDSKTMELSQKFKEKWATRRGEINKKQLARKHAMQSRNLER >gi|313656766|gb|GL545251.1| GENE 1494 1393709 - 1394194 450 161 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855337|ref|ZP_04645650.1| ## NR: gi|238855337|ref|ZP_04645650.1| hypothetical protein LACJE0001_1436 [Lactobacillus jensenii 269-3] putative DNA-directed RNA polymerase, M/15 kDa subunit [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00342 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1436 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00342 [Lactobacillus jensenii 1153] putative DNA-directed RNA polymerase, M/15 kDa subunit [Lactobacillus jensenii 208-1] # 1 161 1 161 161 285 100.0 1e-75 MTKYEDDYGISPRVWSKAYLKKDLTEKATQSHKANIEFSVWRLSHKHKLGISDIHEDQDN SILHFSQYTTTKAAQNHSGYHVALFIDEANSHIPKYAGLSEVERRVANILFKQQKQLSID SEQPEALRKRTKENMRKLNPNYMKREKAKAHALCKERFLLR >gi|313656766|gb|GL545251.1| GENE 1495 1394210 - 1395268 831 352 aa, chain + ## HITS:1 COG:no KEGG:pBT9727_0074 NR:ns ## KEGG: pBT9727_0074 # Name: not_defined # Def: hypothetical protein # Organism: B.thuringiensis # Pathway: not_defined # 2 347 10 341 341 170 33.0 1e-40 MKYTDEQVKQAEKGDILEFADKVGVELAHTGHNEYKGVEHDSLVVTPSRNAWFWNSRNVG GVGALSFAKEYLLSEENLDKKNRFLKAMDIVTKAGINEAKTKEIKREPFKFNPKEIDKRF NKVTAYLTKRRGLNADLVQMLHTQGIIEQDKFGNALFLWRDPETREIKGATKQGTWINHE KFGKRGTLKRIEPNSTYGYGFSFDSIDITQGKGKPENIRFFESSIDALSYYNLNPTKLTN TRFVSMDGLKKEVVASYINLTAKQLTKSGSRLKSIALGVDNDDAGNKFVEKMQKYQARDI DGNVLQILSAQPNTKYGKDWNDVLKHVSQVQASTLKTRLAKQHIQRRELQLS >gi|313656766|gb|GL545251.1| GENE 1496 1395310 - 1395759 371 149 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855339|ref|ZP_04645652.1| ## NR: gi|238855339|ref|ZP_04645652.1| hypothetical protein LACJE0001_1438 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_0383 [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1438 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_0383 [Lactobacillus jensenii 208-1] # 1 149 1 149 149 216 100.0 3e-55 MNNLTNLTVKDVYFNLLTPTPKRIAMEQDNDTYLATIALDNGIRLTDPINKTNKLLKQLN YEPITFQQNQNLRMKSFILENWLKVNDYSVDSKKVDNFVHKNLAKMNVDYYFISKYLNLN NNLQLERYLEQELKKLEKIDLTNIINLDA >gi|313656766|gb|GL545251.1| GENE 1497 1395828 - 1396073 214 81 aa, chain + ## HITS:1 COG:no KEGG:pREC1_0024 NR:ns ## KEGG: pREC1_0024 # Name: not_defined # Def: type I DNA topoisomerase (EC:5.99.1.2) # Organism: R.erythropolis # Pathway: not_defined # 2 81 3 81 792 73 45.0 3e-12 MKLLILAEKSSAYQKFAQVLGGISGNIGTDTYELVHSHGHLLKLKDPQDQVSADKIARYS EWNSYDVFPWNLNDFAWKKHI >gi|313656766|gb|GL545251.1| GENE 1498 1396055 - 1397014 826 319 aa, chain + ## HITS:1 COG:Cgl1793 KEGG:ns NR:ns ## COG: Cgl1793 COG0550 # Protein_GI_number: 19553043 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Corynebacterium glutamicum # 10 304 85 374 759 192 42.0 6e-49 MEKTYLDTDAKKNVQQIKQAAQDKDAIVIATDCDPSGEGDLLAWEIIEAIGWRSTVYRAY FSTESKIKEAIINRKDVSDKFHSGEYLEATSRQRFDYGSMQLSRIATLAAKQAGYNPKVL RLGRFKSALANIVYQQWQKIKNYVKKPYFEVRYKDANGNVFKRNFQDDDTFRFEHKSDAN NDLLNYKPDNVVIDSNVTKTTEPPSLINLMGLADLLSKKGFTTSQVKDTYQKMYEAEYVS YPRTEDTKVDQKDFDELLPLVDSIANVVGVDHSLLTHRTARKKYITAKADHGANRPGINV PTSLDELEKSLENAVRKYI >gi|313656766|gb|GL545251.1| GENE 1499 1397017 - 1397529 387 170 aa, chain + ## HITS:1 COG:Cgl1793 KEGG:ns NR:ns ## COG: Cgl1793 COG0550 # Protein_GI_number: 19553043 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Corynebacterium glutamicum # 1 158 392 550 759 84 33.0 7e-17 MAKAYLAILCEDYVYEQQKAHLANNPDFKSVSNLPKKLNYKLVFNEQDLDSDSNKSNHQG FLSTVTPYIYEGSNPAPAKPTLSFLRKFLKKNNIGTGATQLTTITDISNPKDPTALLKVK NNVYELTFNGLASALLTQGCQISSPHVTKQLLEYMKEVKLFKIEFEKFQL >gi|313656766|gb|GL545251.1| GENE 1500 1397529 - 1398365 754 278 aa, chain + ## HITS:1 COG:Cgl1793 KEGG:ns NR:ns ## COG: Cgl1793 COG0550 # Protein_GI_number: 19553043 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Corynebacterium glutamicum # 26 189 588 753 759 97 30.0 3e-20 MTTIVKHDMPIIRQNINVIKNNSTLQKLALDLPKPAERVNGIYSPTGEEINFSRIFSGHR FTDEEIQQLLAGQTIKVNCKSKKGTAIIVPGKLSEKTYQNKKFWGFSFDVNKTEFPDDGT RTTGIFKPTGQKVTFKNSWSSHKFTDSELQTLLNGETITIECTSKKGTPLSVEGKLSQQK YKDKTFWGFAYDKNTIKFIDNNHFTGIYTPNGKEIRFKNSWSTHKFTESEKDKLLAGQKI RIKLKAKKGSWYATGGLKEQEYKGKTFWGFYVEKKEWA >gi|313656766|gb|GL545251.1| GENE 1501 1399401 - 1399568 155 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855341|ref|ZP_04645654.1| ## NR: gi|238855341|ref|ZP_04645654.1| RelB antitoxin [Lactobacillus jensenii 269-3] toxin-antitoxin system, antitoxin component [Lactobacillus jensenii 208-1] toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein [Lactobacillus jensenii 1153] RelB antitoxin [Lactobacillus jensenii 269-3] toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein [Lactobacillus jensenii 1153] toxin-antitoxin system, antitoxin component [Lactobacillus jensenii 208-1] # 1 55 1 55 55 85 100.0 8e-16 MSKQRLVLMVDDDLKKEFKRTVEDMGLTSTAAVTLFMQQVVNQKRIPFNPTYTKK >gi|313656766|gb|GL545251.1| GENE 1502 1399561 - 1399731 241 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855342|ref|ZP_04645655.1| ## NR: gi|238855342|ref|ZP_04645655.1| RelB antitoxin [Lactobacillus jensenii 269-3] toxin-antitoxin system, antitoxin component [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00337 [Lactobacillus jensenii 1153] RelB antitoxin [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00337 [Lactobacillus jensenii 1153] toxin-antitoxin system, antitoxin component [Lactobacillus jensenii 208-1] # 1 56 1 56 56 89 100.0 1e-16 MNKDLVRVQMNSQIIEAAENVFKKNNLTASEAVTLLYENILLKPEFPFPLQVEKHE >gi|313656766|gb|GL545251.1| GENE 1503 1399862 - 1400107 172 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313472908|ref|ZP_07813396.1| ## NR: gi|313472908|ref|ZP_07813396.1| hypothetical protein LBJG_00336 [Lactobacillus jensenii 1153] hypothetical protein LBJG_00336 [Lactobacillus jensenii 1153] # 1 81 8 88 88 152 100.0 1e-35 MKNDHFQPFDVASIFWIYEEDIDSNKDKKRGKLRPGLITGFTPDGKAVFQRITTKFKNKS PFIKLRYYKIQDLLKIVELLN >gi|313656766|gb|GL545251.1| GENE 1504 1400097 - 1400396 357 99 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855344|ref|ZP_04645657.1| ## NR: gi|238855344|ref|ZP_04645657.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] addiction module antitoxin, RelB/DinJ family [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] addiction module antitoxin, RelB/DinJ family [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 99 1 99 99 147 100.0 2e-34 MIERNRSRFQVRIDSDLVSGVKAKLAQAGIDQQNILSAFLTYVAYTQKIPFQKLTKREEL QAKAAAIFAADNEDKEIPEITNEKDLEDWYAENGDNDEE >gi|313656766|gb|GL545251.1| GENE 1505 1400806 - 1401036 295 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313472911|ref|ZP_07813399.1| ## NR: gi|313472911|ref|ZP_07813399.1| conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 1153] # 1 76 20 95 95 139 100.0 7e-32 MYDQDQIVENYSRLHNDFKFQKPMSILILTAAVLNNNQNSTIIEHAINSIRKDFAKNWVK QMIKLICTDPELRIMF >gi|313656766|gb|GL545251.1| GENE 1506 1401181 - 1401366 150 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855346|ref|ZP_04645659.1| ## NR: gi|238855346|ref|ZP_04645659.1| hypothetical cytosolic protein [Lactobacillus jensenii 269-3] toxin-antitoxin system, toxin component, MazF family [Lactobacillus jensenii 208-1] hypothetical cytosolic protein [Lactobacillus jensenii 269-3] toxin-antitoxin system, toxin component, MazF family [Lactobacillus jensenii 208-1] # 1 58 4 61 120 94 96.0 2e-18 MEIYIADVPFDDKDDSKIRPALVVKVSNERVNIFKVTTKFKNKSKKIRRLYYPIKNGKSP A >gi|313656766|gb|GL545251.1| GENE 1507 1401375 - 1401641 377 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855347|ref|ZP_04645660.1| ## NR: gi|238855347|ref|ZP_04645660.1| SpoVT / AbrB like domain protein [Lactobacillus jensenii 269-3] toxin-antitoxin system, antitoxin component, AbrB famil [Lactobacillus jensenii 208-1] toxin-antitoxin system, antitoxin component, AbrB famil [Lactobacillus jensenii 1153] SpoVT / AbrB like domain protein [Lactobacillus jensenii 269-3] toxin-antitoxin system, antitoxin component, AbrB famil [Lactobacillus jensenii 1153] toxin-antitoxin system, antitoxin component, AbrB famil [Lactobacillus jensenii 208-1] # 1 88 1 88 88 164 100.0 3e-39 MDNPYTGKISQKGQLVIPAAIRKALGLDKGAKVSFEVKNNEVIVKKLPTALDWSNLIAEL PEEKVEIDKNGQYDPKKSPNFHDWMVNG >gi|313656766|gb|GL545251.1| GENE 1508 1401998 - 1402816 718 272 aa, chain - ## HITS:1 COG:no KEGG:pSF118-20_04 NR:ns ## KEGG: pSF118-20_04 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 2 242 6 244 249 261 54.0 3e-68 MILQNKYSLTTDQNRRLAIQNLTRLVYTNSRFEGLTTTLPQTQTIIDGLGVDGVSIDDIN TIVQLKRGWQYIINDPEPLTFNKMKSINKIVALHDALEPGAIRTGSSQVVLAADATYTPE IPDETKEKEYFEDLMSKDISTTDKAMTLMYHNMRNQIFWDGNKRSATLAANKIMIDGGAG LLNVPLDKWGKWNELISDYYRTNKMERIKDWTYQNGIQGIDLDQKQRTQNNAEEQLNRVY AKKFLKENHFATNKSNISKMVKNIEIDRKNAK >gi|313656766|gb|GL545251.1| GENE 1509 1403020 - 1403865 599 281 aa, chain - ## HITS:1 COG:pli0008 KEGG:ns NR:ns ## COG: pli0008 COG3177 # Protein_GI_number: 18450294 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 20 166 100 253 254 110 37.0 4e-24 MDTLLKLQFELTKNTIAIAGKFKTNENYIAGADFKTASPQVVYQLMHEWIDNTSFRIENS KNDDELLRTLIETHIDFERMHPFDDGNGRTGRELINLELAKHEMSFLVVRVTDRPFYLQN LADRNVDNLVGYAKERMAEEKDRYTAYVSQNQKQEQFYKDEIKKLDESTISAKIYGVRDT SAFDKTDIQLNRVYARKFLKENPFEVSDKNIKEISENIALNRINNREKNKDFSVQAGYKS EKEKLDNSLVKKTYNNKFKEHNNHISKELYPSKTQDQNLEI >gi|313656766|gb|GL545251.1| GENE 1510 1403946 - 1404101 180 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855349|ref|ZP_04645662.1| ## NR: gi|238855349|ref|ZP_04645662.1| Fic protein [Lactobacillus jensenii 269-3] Fic family protein [Lactobacillus jensenii 208-1] Fic protein [Lactobacillus jensenii 269-3] Fic family protein [Lactobacillus jensenii 208-1] # 1 50 1 50 360 96 98.0 5e-19 MLKYPKDYLDDVMVRFAYNSNAIEGNKLTLGQTRAVILNETITSTGIEGLS >gi|313656766|gb|GL545251.1| GENE 1511 1404174 - 1404863 424 229 aa, chain - ## HITS:1 COG:XFa0019 KEGG:ns NR:ns ## COG: XFa0019 COG1961 # Protein_GI_number: 10956730 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Xylella fastidiosa 9a5c # 41 218 5 180 188 119 37.0 3e-27 MKKESKNIKKNKIVDQFEFDEFQKWKIEKEKERIKTHVPTIYGYARVSTEEQHLEPQIKQ LKNSGAKKIYQEKWTGTTTKRPIFEKLISLLLSGDTLMVTKLDRFARNTQEALTTVEDLN KRGIKINILNMGYFDDSPNGKLMFTMFSAFAQFERDLIVSRTQEGKAYAKKYDPHYKDGR PKKFTEEQVELAWELRKQGNTYKMINRKTGISIKTLQRRFNELKLKDSE >gi|313656766|gb|GL545251.1| GENE 1512 1405027 - 1405380 239 117 aa, chain - ## HITS:1 COG:no KEGG:lhv_1657 NR:ns ## KEGG: lhv_1657 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 108 12 121 122 139 70.0 4e-32 MLHRENKIKEYHTSSAANLLKEVMDYYDITQKDLAARIGVSQKNISDILNRKRFLTEVLA LRIEKIMGISSKLLLALDSNYKLNLAKANINNQQKSSPLFLKKYDWVNHNTSNLSFN >gi|313656766|gb|GL545251.1| GENE 1513 1405870 - 1407048 1093 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 374 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 1514 1407664 - 1407894 167 76 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00140 NR:ns ## KEGG: LCRIS_00140 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 28 76 2 50 50 72 69.0 4e-12 MKNQVLGTYTVRQTGNANSVTIPASAGLRKGDNVVLILKPDGNLEIKKKEEIFGTKHQSC PLKKRRCKSRIWDMIH >gi|313656766|gb|GL545251.1| GENE 1515 1407935 - 1408297 352 120 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00166 NR:ns ## KEGG: LCRIS_00166 # Name: not_defined # Def: transcriptional modulator of maze/toxin, mazf # Organism: L.crispatus # Pathway: not_defined # 13 112 2 102 112 106 51.0 3e-22 MKAYPKQGDFVFMDAEPHAGHEIGGHDPENQNDRRPYLVLSKEVFNYKTGLVHAMAISSK VKESPFRERIIDFESGINGDLLLTQIPEYDFEARRGEIVGHIKDQGKLDKVLAVFLSEFR >gi|313656766|gb|GL545251.1| GENE 1516 1408397 - 1409095 282 232 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282932224|ref|ZP_06337670.1| ## NR: gi|282932224|ref|ZP_06337670.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 232 44 275 275 372 99.0 1e-101 MFYKDNDVYKQCKQVINVNSDTYKNYRKDVNTKLNEILAAFTWTVICGFPFFIEFGQTTI PISDQVFDITVIITGLVFFIWYKYSHKSFFAKEPAFKKMALVCNVDKYHFLYQKATHQLN QNKDAVRKTFKLSKYIFMIFVINSIEDDIKGIFISHLSNLKLWSIFIWIILTLLFTLLHF SHIIGKIITIFININAKTNSIIDTCIKHGMFVKNYTLLYSTIKVLEENDLKK >gi|313656766|gb|GL545251.1| GENE 1517 1409331 - 1409906 -25 191 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854553|ref|ZP_04644890.1| ## NR: gi|238854553|ref|ZP_04644890.1| hypothetical protein LACJE0001_0023 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_1677 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00321 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0023 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00321 [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_1677 [Lactobacillus jensenii 208-1] # 1 191 1 191 191 319 100.0 8e-86 MKNVICYYRSYSFFTICIIPVSILAIDQFLEKNGPTIVYFTHHTYYLLQIIFIFAITCVI TYLYIKWANKNYIKERKEEVNGSANAANNKIWTLVKLVYKMIQGIIIWFICMVGIFAYQV QYSAWAVRLQKVSNIFLVIMLISYLCWFIYLIDFEIKIKGDRSKFSCLRKFRLKVQRRIR YTGLKILYYFR >gi|313656766|gb|GL545251.1| GENE 1518 1410745 - 1411005 337 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854552|ref|ZP_04644889.1| ## NR: gi|238854552|ref|ZP_04644889.1| putative DNA-damage-inducible protein J [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii 27-2-CHN] predicted protein [Lactobacillus jensenii 115-3-CHN] putative toxin-antitoxin system, antitoxin component [Lactobacillus jensenii 208-1] toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein [Lactobacillus jensenii 1153] putative DNA-damage-inducible protein J [Lactobacillus jensenii 269-3] toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii 27-2-CHN] predicted protein [Lactobacillus jensenii 115-3-CHN] putative toxin-antitoxin system, antitoxin component [Lactobacillus jensenii 208-1] # 1 86 1 86 86 155 100.0 9e-37 MPVTLGIDNKLKEETKSNLEKMGLDMTTATKMYFIYINQHGKLPFTPSVGRSELDKALEQ VKNHEYAGEYDSLEDFRKDLYSLDEN >gi|313656766|gb|GL545251.1| GENE 1519 1411291 - 1411458 136 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472926|ref|ZP_07813414.1| ## NR: gi|313472926|ref|ZP_07813414.1| conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 1153] # 1 55 1 55 55 102 100.0 7e-21 MKRLNDLHNPTINYNVAYDEETGVEYIVLSYGPSISITPRLDKFGKPLNYFDVNQ >gi|313656766|gb|GL545251.1| GENE 1520 1412107 - 1412562 464 151 aa, chain + ## HITS:1 COG:L197116 KEGG:ns NR:ns ## COG: L197116 COG3600 # Protein_GI_number: 15673914 # Func_class: S Function unknown # Function: Uncharacterized phage-associated protein # Organism: Lactococcus lactis # 4 149 151 300 306 109 39.0 2e-24 MYDVFKIVNWLRVRNNADLQANPNAEELTQMKAMKLLYYIQAASLVVTGHRMFKDDIVAW RYGPAVESVHNKYIHQRGIVGYVDNQSLNDYRELQSDSQTADILNSIYDIYGHSSAYDLM RQTHSEKPWKETKQSEVISDDKIKSYFKDVL >gi|313656766|gb|GL545251.1| GENE 1521 1412814 - 1412999 184 61 aa, chain + ## HITS:1 COG:no KEGG:LA2_01010 NR:ns ## KEGG: LA2_01010 # Name: not_defined # Def: hypothetical protein # Organism: L.amylovorus # Pathway: not_defined # 1 61 89 149 149 111 86.0 1e-23 MPEDQVKLRIKQEFKTSGRYDECDDDYWVFRLSKKGRVIGKISDNIFYILAVDPKFDLYK H >gi|313656766|gb|GL545251.1| GENE 1522 1413510 - 1414730 820 406 aa, chain + ## HITS:1 COG:no KEGG:Hfelis_08960 NR:ns ## KEGG: Hfelis_08960 # Name: not_defined # Def: N-6 DNA methylase # Organism: H.felis # Pathway: not_defined # 7 405 12 409 810 294 42.0 4e-78 MAHKEYIKDLITGKQIFKTPEEINRQGIIKILHEDYNYPLSLMVKEFGVKKSPSDVKRSV PVDVAVFEGKKDLKNKKPKIFIETKKDNYNLGKDQLKDYMTFERDVAYGIWYNGHNENGQ TIAYFKKYFKDGTPKFEEISDVPKYGFNSINEQIKYSDLKPTSNLKVIFKNLRGFLAANS TGTTRDEIILEQLSMIIITKLYDEKYAEDTYVKFRVVEDNPKKTAETIKQLYNEAKNRWN DVFTKDDEITLDDDVLIKVVAQLQHYSLMNSNRNVISEAFESIISYATKGSQGQFFTPEN VARLMVEIANPTESTTVFDPASGTAGFLTTSMFHVWNQIQQTKMRDDAKKDKEQQYATNN LFGIEKDSFLAKISKAFMAVLGDGRAGIFVEDSLKEKIGKLPRKQK >gi|313656766|gb|GL545251.1| GENE 1523 1414850 - 1415218 204 122 aa, chain + ## HITS:1 COG:no KEGG:Hfelis_08960 NR:ns ## KEGG: Hfelis_08960 # Name: not_defined # Def: N-6 DNA methylase # Organism: H.felis # Pathway: not_defined # 2 108 458 567 810 99 46.0 4e-20 MSLRYLEKGGILGVILPETVFHAPKARQVREKLFYKNNITHIIDLPHDTFRPYNNAKTDI IFLRKGERQQEFVTGIKIDEIGHDHTGKAKYKFDPHTFSFTDEIADKIPSIVNSLRNNSS SN >gi|313656766|gb|GL545251.1| GENE 1524 1415365 - 1415871 160 168 aa, chain + ## HITS:1 COG:no KEGG:Hfelis_08960 NR:ns ## KEGG: Hfelis_08960 # Name: not_defined # Def: N-6 DNA methylase # Organism: H.felis # Pathway: not_defined # 4 164 636 801 810 132 46.0 4e-30 MSYLKGLGTNPYIRVKDIVNLEIAHNRLDDIPDKEYERLYSPEKTLKEKDIVFVRRGSYR IGDVGILYKKDLHSILTREILVLRVLNNDLGITPFNLLGLLNSQGVRKQLNNLILMDTTL PNIGDRWRDIRIDISNKRELSNLSNQIYEMYSTRCKFWNEYSKLFGNE >gi|313656766|gb|GL545251.1| GENE 1525 1416327 - 1416509 164 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472931|ref|ZP_07813419.1| ## NR: gi|313472931|ref|ZP_07813419.1| toxin-antitoxin system, toxin component, HicA family [Lactobacillus jensenii 1153] toxin-antitoxin system, toxin component, HicA family [Lactobacillus jensenii 1153] # 1 60 14 73 73 111 100.0 1e-23 MPWKPAKMVRFLLKHGFVEEPKSGGHRSFIILKQIPMHAKELRKGTENQILKEAGLSKRD >gi|313656766|gb|GL545251.1| GENE 1526 1416545 - 1416940 348 131 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01740 NR:ns ## KEGG: LCRIS_01740 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 8 130 7 128 131 123 52.0 3e-27 MKQDIATYPVILTEYNDESGHYYVVTSPNIQGMVTDGETIPEALENAKDALATMLANDPE RPEVQDPREWTLDKGQQTSWVSVNMTRWLNKYGKTVRRNISIPADLNDWAKKNKINVSKV ATEALYDLQEA >gi|313656766|gb|GL545251.1| GENE 1527 1417522 - 1418376 810 284 aa, chain - ## HITS:1 COG:mlr2757 KEGG:ns NR:ns ## COG: mlr2757 COG3177 # Protein_GI_number: 13472455 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 15 239 10 238 263 124 35.0 2e-28 MDTNKLTELRKEIDKYRPLDSDQIRALNKDIRVEHIWSSNAIEGSKIDKFETEAIINKGI TIHGESIGDVLSTIDLNEAYDYMLDLASHKQPLSQTTIRDLNRLALAKTHPEWGGEYRVL EVHPAKTDFNPYTEPFDIRPEMDNLIEWSRKAQKEMHPVKYAADLHYKFVTIHPFRDGNG RTARLLMSLALTENGYPVVNIMPDKESREEYMETLLDSQKRHDPTAFEDLVGKYTERTLK KRIQILQLNEKNKEEAREETRFSKEQLNELAKRHRIKSKLRKRN >gi|313656766|gb|GL545251.1| GENE 1528 1418366 - 1418803 375 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854543|ref|ZP_04644880.1| ## NR: gi|238854543|ref|ZP_04644880.1| helix-turn-helix domain protein [Lactobacillus jensenii 269-3] DNA-binding protein [Lactobacillus jensenii 208-1] helix-turn-helix domain protein [Lactobacillus jensenii 269-3] DNA-binding protein [Lactobacillus jensenii 208-1] # 1 145 69 213 213 281 100.0 1e-74 MAKALNCEPDEIDPSYLQFVVTNDKLDNKENLQIFSSNLEALISREGLTYKEFCENLGIS YRALWGWATGEIKPSEESLEILSKHFRIPISDLLNTSIDTEEAIKRPFEILQHIPSNLSK EDKDQIMDFIEFIKFKNKRKARNGY >gi|313656766|gb|GL545251.1| GENE 1529 1418878 - 1419006 58 42 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854543|ref|ZP_04644880.1| ## NR: gi|238854543|ref|ZP_04644880.1| helix-turn-helix domain protein [Lactobacillus jensenii 269-3] DNA-binding protein [Lactobacillus jensenii 208-1] helix-turn-helix domain protein [Lactobacillus jensenii 269-3] DNA-binding protein [Lactobacillus jensenii 208-1] # 1 40 1 40 213 68 100.0 2e-10 MAKGRKAISLAARIRRERIKENLNELLKKRGMTPKELAEKQV >gi|313656766|gb|GL545251.1| GENE 1530 1419167 - 1419598 357 143 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854542|ref|ZP_04644879.1| ## NR: gi|238854542|ref|ZP_04644879.1| hypothetical protein LACJE0001_0012 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_0098 [Lactobacillus jensenii 208-1] putative toxin-antitoxin system, toxin component [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0012 [Lactobacillus jensenii 269-3] putative toxin-antitoxin system, toxin component [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_0098 [Lactobacillus jensenii 208-1] # 1 143 1 143 143 286 100.0 4e-76 MDIKDILFGFLFEIAKEYKLDVNLEEPGSPIPTCVVPEDRNIFLNYTDVGERKQAFQFAH ELGHYLNGDQERCDCDSAILDIKIEYYADRTATKLILKGLSKNSIYFSNLYDLMEICAIP FNMVDCVNELITNQYPSLIASFN >gi|313656766|gb|GL545251.1| GENE 1531 1419889 - 1420182 70 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854541|ref|ZP_04644878.1| ## NR: gi|238854541|ref|ZP_04644878.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 97 92 188 188 172 100.0 8e-42 MYYFGSLSTLGIQAFLTLKEATNITNLQPWATMYNRLIDKAYNQNNLLSKNRLEISPNKL SKFTKYFDTAYQQKIKDLFSKEKAINHRILSTKDFML >gi|313656766|gb|GL545251.1| GENE 1532 1420741 - 1421139 158 132 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0947 NR:ns ## KEGG: LDBND_0947 # Name: not_defined # Def: chromosome partitioning ATPase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 110 100 209 263 151 64.0 7e-36 MMLYLWLYDNYQKLHIDKYDYILIDCHPDFSTATKNAIIVSDDILSPITPSEYGYKAKYN LKERLKELSEEAIDFTSHKSYVTANLYFLANMLKHNTTSSRDLLNSLKDEKNQVIIVVLL IFLIKSYLINLN >gi|313656766|gb|GL545251.1| GENE 1533 1421272 - 1421553 368 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238852897|ref|ZP_04643300.1| ## NR: gi|238852897|ref|ZP_04643300.1| conserved hypothetical protein [Lactobacillus gasseri 202-4] hypothetical protein HMPREF9209_0042 [Lactobacillus gasseri 224-1] conserved hypothetical protein [Lactobacillus gasseri 202-4] hypothetical protein HMPREF9209_0042 [Lactobacillus gasseri 224-1] # 1 93 1 93 93 101 92.0 2e-20 MAFKPDDNIAKALKQSNSNNNSKNNQNEQNTQNYSDLLNLVSKKNVEKESISITIDSDVK SEIEKLAKKNGYKHLSTFINDYFKKLLSLTQNN >gi|313656766|gb|GL545251.1| GENE 1534 1422216 - 1422392 150 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854538|ref|ZP_04644875.1| ## NR: gi|238854538|ref|ZP_04644875.1| hypothetical protein LACJE0001_0008 [Lactobacillus jensenii 269-3] hypothetical protein HMPREF0886_0094 [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00304 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0008 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00304 [Lactobacillus jensenii 1153] hypothetical protein HMPREF0886_0094 [Lactobacillus jensenii 208-1] # 1 58 1 58 58 90 100.0 5e-17 MTENFDDILGKLFDKSEEKEQTEDCPNSEQLDLFNVDYAHNSDLPVDVKQKNLLLLLY >gi|313656766|gb|GL545251.1| GENE 1535 1422392 - 1423129 417 245 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472942|ref|ZP_07813430.1| ## NR: gi|313472942|ref|ZP_07813430.1| putative SAM (and some other nucleotide) binding motif:N-6 Adenine-specific DNA methylase [Lactobacillus jensenii 1153] putative SAM (and some other nucleotide) binding motif:N-6 Adenine-specific DNA methylase [Lactobacillus jensenii 1153] # 1 245 1 245 245 462 100.0 1e-129 MRFRSQLNRVIWTGLNATHTKILTVILSKTADQLAAYQKEQIQKKVKALNLDKNDLDKKT LTRIASEVKFPTDLVTRVTYSEIDHAIGYDNNNASIGTYIEDMKNKLEKWREIKADGITA SFPMFKGIINNTNKKYFEFVYNDFMINILLINPKTGDFVRYPAREIVDLSSVRSQTLLRL LKQLRTVGSITFRKHIEKTNSKTRIGLWEQLEIPEKQEKENFKRCSNRNFPIFYKFKLYK KLWHC >gi|313656766|gb|GL545251.1| GENE 1536 1423296 - 1423619 237 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854537|ref|ZP_04644874.1| ## NR: gi|238854537|ref|ZP_04644874.1| RepB [Lactobacillus jensenii 269-3] putative Rep A [Lactobacillus jensenii 208-1] RepB [Lactobacillus jensenii 269-3] putative Rep A [Lactobacillus jensenii 208-1] # 1 107 96 202 202 193 99.0 3e-48 MKQKHGTAEKEYFAVHPEEKEQEKNEDDKLNIDVWQPSRGELTVRDFYDCELGKEVLKAD IPKLEKIIAEILEQVRNAGGDMQLVADYNKTLGLLQKKKAIENFDNK >gi|313656766|gb|GL545251.1| GENE 1537 1423739 - 1424011 148 90 aa, chain - ## HITS:1 COG:no KEGG:LSL_2159 NR:ns ## KEGG: LSL_2159 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 3 85 173 254 256 77 46.0 3e-13 MNTWEQENYLVLPFNNIDHAQFMVDLMRFYAAKNDIEEDKALDRMMTVLPSEKEVSLHFP LTQEEKENPNQLKTKRIKSFYSKRRQSLER >gi|313656766|gb|GL545251.1| GENE 1538 1424314 - 1424520 293 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238852899|ref|ZP_04643302.1| ## NR: gi|238852899|ref|ZP_04643302.1| conserved hypothetical protein [Lactobacillus gasseri 202-4] conserved hypothetical protein [Lactobacillus gasseri 202-4] # 1 60 1 60 260 107 98.0 2e-22 MTDKNIALARFITSFGSMNNYKSSVLQTKRVLDNKKGAKLPKNDIAILNDALDGIAAIKK TDLIALVS >gi|313656766|gb|GL545251.1| GENE 1539 1424822 - 1425376 504 184 aa, chain + ## HITS:1 COG:TVN1223 KEGG:ns NR:ns ## COG: TVN1223 COG2452 # Protein_GI_number: 13542054 # Func_class: L Replication, recombination and repair # Function: Predicted site-specific integrase-resolvase # Organism: Thermoplasma volcanium # 1 76 1 76 192 67 46.0 2e-11 MKAGKVMNLLQISRSTLKRYREKGILKARRLPSGQYTFDDDSVFLLKNGRSPRLTLLYGR VSTYKQKHDLANQMQELQDFAEKKGYQVCEDIINVSKTRRKRVLPAMQSKLISAVEFKYD RHLTDVILDTIESNLVDELNTPENHENLKRLRSYLHRRWVDIKPFKMRHLSVIKAIGCCE SQSP >gi|313656766|gb|GL545251.1| GENE 1540 1425815 - 1426084 163 89 aa, chain + ## HITS:1 COG:no KEGG:LBA1634 NR:ns ## KEGG: LBA1634 # Name: not_defined # Def: surface protein # Organism: L.acidophilus # Pathway: not_defined # 1 85 1 78 1924 88 56.0 8e-17 MLSKRNYQERIRQMVPKKERFSIRKFSIGAASVLIGFTFVSMAGSHKVQAADVADKSVVV DTFNKDKSQELTENKTIAMPKAEKRLLVL >gi|313656766|gb|GL545251.1| GENE 1541 1426378 - 1427742 1306 454 aa, chain + ## HITS:1 COG:no KEGG:LBA1634 NR:ns ## KEGG: LBA1634 # Name: not_defined # Def: surface protein # Organism: L.acidophilus # Pathway: not_defined # 1 426 242 675 1924 141 30.0 8e-32 MNDSSIGTINITNDITITGKVNGLTTSGISDINKHFLYLQSEGSARDLTINGNGHRINFA GYSIALQNKNYTNAANPWNITLKDMTIEGSKYDYSPISFYGRKSNTENSKLTFDGVTANL NDRPLVDKYGENLPVHFAGENNITLNNMSIGYNLVTGKTVKFDSGNTTFNVDGKVTGNSI NPDNWVIRSTENASNSENPSTLINEGATVTINAKSDDLRGIYAGRQLTAGQPIYGVTVIN GTLNAKMAAGHSTAIWSHDLEIGKKGNVTIHTKQTNQADGVENGTSNSVTNYNGTHYAPI SLGVGPISSVASPLSKQTVSLINNGSLTIIRDTAKKTLVPLISMGDGSLSSNTTLKFSVG AGATLDLQDKAGTFRYGIEPSTPLNGLVTLWGTSGTDLLEFLTPAYVNLQRTGDIRGTTL EWKVSTTVLLLMDQHQLLNGIKVIRLLLLMMFGM >gi|313656766|gb|GL545251.1| GENE 1542 1427640 - 1428785 1341 381 aa, chain + ## HITS:1 COG:no KEGG:LAR_0090 NR:ns ## KEGG: LAR_0090 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 352 14 362 656 219 44.0 2e-55 MEGVYNSTTVNGPTPVAQWDQGNKTTTPNDVWYVRYLISANQWGNNSGQFMGKDQHPNTV VAKKGVDTLYNSNATVLMSKNQGADKYENGTMPTEVQQALHLNSFLNNFNFWRPQRMAMG SKLNDNPDVKIDDFDKYHAEAQTIDGTTRQTLSDLDANKGLKDLIGPDEQPITDFKDIVK HVTWYNSATDKDEWNKIMIQPTDSKDPSARVPYPEPQNPTGNLKTTDGFAWAKVTYADGS VDFVKIPLKVTEKKYSEELTPSYPGVSVEQGKSDSVDPSFKDENDKAADAPAGTKYTAGE NTPDWIKVDPDTGKVTVSPTDDTSVGSHDISVTVTYPDSSTDQLTVPVTVTEKSNLAEKY PVSYDKLNVENLAATHQQLAQ >gi|313656766|gb|GL545251.1| GENE 1543 1428806 - 1431097 2482 763 aa, chain + ## HITS:1 COG:no KEGG:LJ0621 NR:ns ## KEGG: LJ0621 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 401 752 1994 2323 2789 167 37.0 2e-39 MPEGAITGYEKGDFDAPAGVTIDVNHDTGKVTASVGKNATLGSFEVPVKVTYSDGTYAEV KVPVSITGNKVDPGSGDVVYYGDQSMVVFNGNLTTVHKTTDSHELSAKDSAFQTITYYSD WNKKGNIVSDYNKHVIYKLSADGTKYVNEADATDSFDASAISFNWQKGYEVNTGVDNFSN GSADTLYQLEKGAVNSEEQTDANDPSGLAGNSKYRYDFSISDTNVLQKLGLSPAGYNAWA NVYYNFLGATGKINIPVNYGSEVSTDEAGIKNYLATNSISGKTFVNGNPTGIKWAENGMP GKDGKFAASNMTGIVEFTFDNGTKLNVQVTFKTGSHVSTSGSKVNDDTNLYVERTIEYDV TGTGHSPINSVTQKVHYVRDGYHKINADGTDAGEIIWNEWKLADGQTAEFPEYSVDQITG YDAYINGAKATQVDAAKVAETNGTPQNGQNITVTYKKQNSTPVPYKPGKDGVNDAINRYV TRTIIVKEPGKEPQTITQTVHFTNEDKDGNSGYKDPVTGEIKYNTDWHVASDLNAKTGSW EEYTAPSVTGYTPSQAKVEAKTVTAETEAASVTISYTKNADIPVPYKPGKDGVNDAINRY VTRTIIVKEPGKEPQTITQTVHFTNEDKDGNSGYKDPVTGEIKYNTDWHVASDLNAKTGS WEEYTAPSVTGYTPSQAKVEAKTVTAETEAASVTISYTKNADIPVPYKPGKDGVNDAINR YVTRTIIVKEPGKEPQTITQTVHFTNEDKDGNSGYKDPVTGED >gi|313656766|gb|GL545251.1| GENE 1544 1432028 - 1432540 221 170 aa, chain + ## HITS:1 COG:no KEGG:LJ0621 NR:ns ## KEGG: LJ0621 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 8 153 1973 2127 2789 99 43.0 5e-20 MVIVASRDPSTAEIKYNTDWHVASDLNAKTGSWEEYTAPSVTGYTPSQAKVEAKTVTAET EAASVTISYTKNADIPVPYKPGKDGVNDAINRYVTRTIIVKEPGKEPQTITQTVHFTNED KDGNSGYKDPVTGEIKYNTDWHVASDLNAKTGSSGRIYSTISNRLHSITS >gi|313656766|gb|GL545251.1| GENE 1545 1432470 - 1434827 2581 785 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1482 NR:ns ## KEGG: FI9785_1482 # Name: not_defined # Def: putative mucus binding protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 8 552 863 1339 1356 224 35.0 9e-57 MLRLVAREEYTAPSVTGYTPSQAKVEAKTVTAETEAASVTISYTKNADIPVPYKPGKDGV NDAINRYVTRTIIVKEPGKEPQTITQTVHFTNEDKDGNSGYKDPVTGEIKYNTDWHVASD LNAKTGSWEEYTAPSVTGYTPSQAKVEAKTVTAETEAASVTISYTKNADIPVPYKPGKDG VNDAINRYVTRTIIVKEPGKEPQTITQTVHFTNEDKDGNSGYKDPVTGEIKYNTDWHVAS DLNAKTGSWEEYTAPSVTGYTPSQAKVEAKTVTAETEAASVTISYTKNADIPVPYKPGKD GVNDAINRYVTRTIIVKEPGKEPQTITQTVHFTNEDKDGNSGYKDPVTGEIKYNTDWHVA SDLNAKTGSWEEYTAPSVTGYTPSQAKVEAKTVTAETEAASVTISYTKNADIPVPYKPGK DGVNDAINRYVTRTIIVKEPGKEPQTITQTVHFTNEDKDGNSGYKDPVTGEIKYNTDWHV ASDLNAKTGSWEEYTAPSVTGYTPSQAKVEAKTVTAETEAASVTISYTKNADIPVPFDPS NKDMYREVTRTINVVDPITGKISTSVQTAKFTREDKNSNAGYTDPVTGKTTMNPWTPAKQ GLRAVNVEQIKGYVAKVDGNVDAVVVTPDSANMVVTITYQANKPEGQNITVKKDTVPDPA DGIKNKDDLPDGTKYTWKEVPDVNSVGEKTGIVTVTFPDGTSVDVKVTVYVDPVVESNRD TLSKEANTGNTNVAKAATVTSSKVESKKTLPQTGSKTEQVGILGLAIATVGSLLGLGVNR KKRQK >gi|313656766|gb|GL545251.1| GENE 1546 1435481 - 1436290 774 269 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 269 124 391 391 247 44.0 1e-65 MYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVYIAI GIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKTYPQ AHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSYNRV IRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTFIGI QAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|313656766|gb|GL545251.1| GENE 1547 1436484 - 1436867 280 127 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855477|ref|ZP_04645786.1| ## NR: gi|238855477|ref|ZP_04645786.1| putative prophage repressor [Lactobacillus jensenii 269-3] putative toxin-antitoxin system, toxin component [Lactobacillus jensenii 208-1] putative toxin-antitoxin system, toxin component [Lactobacillus jensenii 1153] putative prophage repressor [Lactobacillus jensenii 269-3] putative toxin-antitoxin system, toxin component [Lactobacillus jensenii 1153] putative toxin-antitoxin system, toxin component [Lactobacillus jensenii 208-1] # 1 127 1 127 127 250 100.0 3e-65 MIDLINYLIKYAEKLGIGCLWFDGSPDNEPYSRLTLTNSKEIVMNINWKHAKAIPFEIGH LIGHLEHNDKHKDETLLKIERDKNEENAELYSVGLISGYVLKNKIEFNSYKDLFCYYGIP LRLLKCY >gi|313656766|gb|GL545251.1| GENE 1548 1437293 - 1438213 853 306 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 293 1 293 391 290 45.0 2e-78 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQFGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDTTYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTALLQNMKSRGLKQVELFLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFMPNGTRAT IVSLET >gi|313656766|gb|GL545251.1| GENE 1549 1438869 - 1440326 1306 485 aa, chain - ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 11 485 18 487 487 455 48.0 1e-127 MFLLKYIHIIIISINTILAFYVVFRRKRSVATAWAWLIILLIFPILGFILYGFFGRGLSQ ENLFAINKQNHIGLRNVQKMIPRFQKRAGKSDTAHKAQVAIEYFNQNREAPLSKNNQVKL YTDGHEKFQDLMLDIEKARETINVEYYSFYNDNIGNQILNLLVKKAKEGIKVRLIYDAWG SFGATSKWFDKLRKAGGEVLPFITSRNMILRYRINYHLHRKIVVIDGRIAWTGGFNVGDQ YLGKKKKFGYWRDTHVRIVGSAALLLQERFVMDWNASITKISQVITFSEKLFPDLNEDEI TEHNVATQIVADGPDSEIPYMRNGMMRLMLLARKRLWIQTPYLIPDDAMIATWQIIVNSG VDLRIMIPSKPDHPFIYRATQWYANQLTKMGIKIYIYDNGFLHAKTIVGDFDYAVVGSMN QDYRSYSLNFEDMAVFYDSNINHELAQIFEEDMKNAHLLTIEEIQNQSHYLRSLQSFSRL LSPIL >gi|313656766|gb|GL545251.1| GENE 1550 1440757 - 1441326 320 189 aa, chain - ## HITS:1 COG:lin0950 KEGG:ns NR:ns ## COG: lin0950 COG4814 # Protein_GI_number: 16800019 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 68 187 39 160 273 60 26.0 2e-09 MLFNSRKYIEETEHNRIKHSQDPSMFELISLGTLASFPPSRFLLRLHPNKITSYSNYKIE PSTCQQTPILYIHGFRGGDYTTRVLVKEAGKAKHNPHYLKVTCDAVGNFTLEGTWTGDQY PIVQLVFRHRIAGMSAISYYLSRILPFLKKQFKFDTYFAVAHSLGAPAIVATAMHYFKHK NFPTLKKQP >gi|313656766|gb|GL545251.1| GENE 1551 1441401 - 1441571 153 56 aa, chain + ## HITS:1 COG:CAC2551 KEGG:ns NR:ns ## COG: CAC2551 COG3341 # Protein_GI_number: 15895813 # Func_class: R General function prediction only # Function: Predicted double-stranded RNA/RNA-DNA hybrid binding protein # Organism: Clostridium acetobutylicum # 3 56 6 63 240 57 50.0 6e-09 MKFYAVKKGRKIGVFRTWDECKEQVDGFSGAEYKSFSNLLEASQYLNLSTDQKEPL >gi|313656766|gb|GL545251.1| GENE 1552 1441568 - 1442164 273 198 aa, chain + ## HITS:1 COG:PA1815 KEGG:ns NR:ns ## COG: PA1815 COG0328 # Protein_GI_number: 15597012 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Pseudomonas aeruginosa # 43 192 6 140 148 80 35.0 3e-15 MKPSEDNLNAAIEKVKAQSRLLDDVPKVKSKSATSKADYSQYEVVIFSDGGCRNHGNIKG SHVQKNDKAAWAYLIEYDGKRVSKAGGEFGATNNQMELTGFIQAMKRSLALKLNNKKTIF VLDSRYVLRPITEKWIWSWRNNGWKRSKGELKNKELWQEISRLLPQFKNAEFEWTHGHED NYGNNFVDKALNVYMDKM >gi|313656766|gb|GL545251.1| GENE 1553 1442186 - 1442950 659 254 aa, chain + ## HITS:1 COG:BS_yceF KEGG:ns NR:ns ## COG: BS_yceF COG0861 # Protein_GI_number: 16077361 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Bacillus subtilis # 3 249 7 246 257 179 43.0 5e-45 MIIFKMYQPFFEINNWTHVITSGKDWLIILTLILMECLLSVDNAVVLAAQTQVLPTKLEK EKSLLYGLWGAYLFRFIIIGIGTYLIRFWEIKLVGSVYLFYLCFKFFYEQHHPEKVKAKH KHHSQHKNKKHVFSLFWRTVISIELMDIVFSIDSVLAALAIAENPVIVLIGGMIGILCMR GVAEIIIRLMEHIPELEPMAYILIGIIALKLLLNLPPLEFEIPNSIFALIVFGILGITVL FHFWRIKKHGPKHF >gi|313656766|gb|GL545251.1| GENE 1554 1443005 - 1443964 1015 319 aa, chain - ## HITS:1 COG:SP1027 KEGG:ns NR:ns ## COG: SP1027 COG4086 # Protein_GI_number: 15900898 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Streptococcus pneumoniae TIGR4 # 33 311 39 322 324 114 33.0 3e-25 MKKFMAFLAAMIIATGVSFTNKNTAKADDDTTPVVTLGSSLTSSQKQGTINTLTQSLNGA SYKTITVTGSDLVKYLNPSGETFTTSSGVWSSAMIQKTSSGSGINVKILDYNGSNNITTI TANQYKNAALTAGITDANIYITSATPIDGSGALAGIYAAYAQSGNTLNQSQVNAAQSELN TLSSITQDNKNKDGYSDAQLNNAVAGAKADMAKYGSNITNNQITTIVNNQLEKNNLTNVI TNSQKQQIINLLITIKKSGALNSNSFKEQAQKLSSQIQEGAKSIFNKLNSQDTKNWIQKI IDAVINFFKGLFGGVIVLK >gi|313656766|gb|GL545251.1| GENE 1555 1444130 - 1444942 619 270 aa, chain + ## HITS:1 COG:BS_yveT KEGG:ns NR:ns ## COG: BS_yveT COG0463 # Protein_GI_number: 16080481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 4 223 3 222 344 121 31.0 2e-27 MQQPKLTVIMPVYNLAEYLPRALDALLHQDESNFKLLIIDDGSTDETNEILQEYRPKFPY FTVIKTKNGGPSSARNIGLNQVDTPYFTFHDGDDFVDPGYVSFFLRAFKLHPDCDLVSCG YYIDRPKGRSHVVGKPESGVLTKGNAFMKLTDIFDSPMKGYCWNKGYRTKLVRKHNLLFD TDVAFMEDQIFNVKYISIARKVYYTQKPYYHYWQRSDSIVHKPNLKKTSDLFIGNYLIWS KIIKSIMQEHEKEKAKKKANKILLKNSNVD >gi|313656766|gb|GL545251.1| GENE 1556 1444961 - 1445497 637 178 aa, chain + ## HITS:1 COG:STM3079 KEGG:ns NR:ns ## COG: STM3079 COG0596 # Protein_GI_number: 16766380 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Salmonella typhimurium LT2 # 3 115 54 167 318 83 37.0 2e-16 MKVTVNNIELYYQKLGKGEPLILLHGHHLDGGMFDKILAPLSLYYTVYVLDMRGHGLSEG DAAEHYQEEVSDLAAFIRKLDLKQPYIYGYDAGGVVTLMLASQYPNMLKKAIVAGVFVHG GGIKPYHYAVEGVKRFIKRDPDSQVELTETLIEPEKLRKIITPTLCVVGEKIGLKLNM >gi|313656766|gb|GL545251.1| GENE 1557 1445642 - 1446016 518 124 aa, chain - ## HITS:1 COG:NMA0706 KEGG:ns NR:ns ## COG: NMA0706 COG3759 # Protein_GI_number: 15793684 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Neisseria meningitidis Z2491 # 1 110 1 112 123 58 33.0 4e-09 MRTFSIVLLLIIAIEHLFIAFLEMTATPQKQAKAFGVDEEFLKQADARISMANQGIYNAM LAVIIILGQWIFTGINTVYANLLFSSFVCVVGFFGGLTVNKKIYFVQMLPGLVALIISCL GLYM >gi|313656766|gb|GL545251.1| GENE 1558 1446156 - 1447142 1258 328 aa, chain + ## HITS:1 COG:lin0509 KEGG:ns NR:ns ## COG: lin0509 COG0462 # Protein_GI_number: 16799584 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Listeria innocua # 9 321 1 311 311 285 45.0 8e-77 MNKEELHQMLHPMKLIGLGGNKALNEKIANILHMPLLETSVHHFSDGEIAVNIAETVRGC DVFVIQSIQDPVNENFMELEIVCDALHRASAHRINCVVPYLAYSRSDTKSRSREPITAKL VANLLQLTGIDRLITLDLHASQIQGFYNIPVDHLHALPLLAQYFLDNGIATSDDEDVVIV SPDHSGTKLARNFATNFNAPIAIVDQRGAHYDDSVHDMIGDVKGKKCIIVDDLIDTGSRV ASSTHSVLAAGATKVYVAASHALLSHDAVDVLNKLPIEQIVVTDTIKHEKYPDRIVRVSV DQLLARGIDYIYNDRSIHQIFDEQNRLK >gi|313656766|gb|GL545251.1| GENE 1559 1447299 - 1447967 470 222 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0153 NR:ns ## KEGG: LDBND_0153 # Name: not_defined # Def: transcriptional regulator (TetR family) # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 222 7 226 226 249 57.0 7e-65 MKRRRIILDNTFKLIREYGIDNVSLQMIAEKSEISKSLLQSYYPHKQKLTTDIMHNLFNT LWDEVYTNVVDQKQNLFTQVKAFCYIIGSLGIRDNGLDQVIRQAFSDNTTLDTWSQMLNS WITERNLISEFTPDQIDNIRSGISFIAAGGGRLYLKRKSHSLNPEEIADFMTSTLMGVFM NYDASEIKKVLDEGHQVIRNADIGSIHFAIDHMFDEGKEIYS >gi|313656766|gb|GL545251.1| GENE 1560 1447978 - 1448481 492 167 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_00615 NR:ns ## KEGG: LAC30SC_00615 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 145 1 145 274 130 46.0 3e-29 MAETTRSELRRLDAEQNRTYKRSFVATIFVVVSLILFSFTLMNPSFMKGITRTSNGQAVI DAQINAKFDRLAVLVNGKKNSSSNLLTSNQTQVLSDELIDYTLGIHWFKTDNASLANEIY STLNKEIDSNSDTEAQSVMKALKNKEIAQYIQLFQLLIWQMLLNKLI >gi|313656766|gb|GL545251.1| GENE 1561 1448487 - 1448810 303 107 aa, chain + ## HITS:1 COG:no KEGG:lhv_0139 NR:ns ## KEGG: lhv_0139 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 19 107 189 274 274 85 51.0 6e-16 MFLIINTVLVIVLILSLISTLMEMREKLRLKAIIHEVTGAGMWTGALMITIYVILAMIPL IFNVESITLLDFGYWLKLASSVFLEYVMFGAIIFVINTIPWQITSTK >gi|313656766|gb|GL545251.1| GENE 1562 1448887 - 1450386 1573 499 aa, chain - ## HITS:1 COG:no KEGG:LJ0107 NR:ns ## KEGG: LJ0107 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 492 1 506 508 475 54.0 1e-132 MNFKRKLATISASIMLLAPIFTTIITAPVASAATFTSSELNTIRSFQNRYSSLDQTAYSK NNIYTITPNLTEPFSAGQISQNYIDSQLAWINYYRALFGLPSVTASKTENQNAQVAAAVM AAIGANPFQSQHGLPNESKPSYISESDWETAVDLTKNSNLNFNILNQSAGDVITDFLTDR NNLTGGDTGHRAWILSPWLYTTGIGAAYGANGYRYSVQRVLNLTDVMKTATKSTITYPSE GVFPIELLSGGNIYWSFYLANDQIKSTPTITITDLDTGQKTTATNVHNYSSGFYGNFSTI ITYKPGNISLVSGHQYQVNINGIYSYSFKLFNQVAANQPSLNTSTKKSSANVQKQVEEIA NSKSSTPAEKDVKIKSALLLKAEEISDSLMKNRITNTTIFGRSYQDDKNFYNLGKNQWFR DFYRVSNPLISAGILDSDDNMLDKQIYTSPYANLQTKTYAYLKPQTSYAYGQSIIIGGIT WYYLGPNQWVQKIPSKNPA >gi|313656766|gb|GL545251.1| GENE 1563 1450591 - 1451676 1269 361 aa, chain + ## HITS:1 COG:STM0380 KEGG:ns NR:ns ## COG: STM0380 COG1181 # Protein_GI_number: 16763760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Salmonella typhimurium LT2 # 4 356 3 360 364 309 44.0 7e-84 MTDKTRVGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVW DDPTYTIKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDD VLAAAVTMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYKYVSEKLGTDLFVKP SNQGSSVGITHVKSESDYLPALAEAFKYDDKVLVEEAITGTEVETAVLGNDDIIVSGVGQ IINAKGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSML RTSDHEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIELAVERHNHKKTLLHKP E >gi|313656766|gb|GL545251.1| GENE 1564 1451688 - 1452407 937 239 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_00640 NR:ns ## KEGG: LAC30SC_00640 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 6 238 8 247 249 189 57.0 7e-47 MSLNEKELVNPSTAAAELKISVATLRKYSLIVEKTTGDSEYYARTSQRARLYSAQNIADL KAFHKLAKQSGLTLSDAAQQIFAVSDKKVEDQKKADKKIEEQANALMDSKQVVKLLSALQ QTIANQNQAIADLQKQVAEVQKQNAALIDSQKQLAAPQATEDLPEMDEDFFDEEIEEKTP EQKRSEVTEDMSKSEDEVRGAILKKAQENAAKRAKENVHRTLADMQLPKKKHWWERFLG >gi|313656766|gb|GL545251.1| GENE 1565 1452482 - 1453582 1021 366 aa, chain + ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 10 360 4 362 370 176 30.0 7e-44 MMWKKQLTKKNLFTLFVLFLGLIITSWIYFKPSSYADTAIIVNKNLNDRVTEKTEDEYKN YDEKRVQTLKLKVISGKHQGKIYTVKNHYVKSQLETQAYRSGERVLVSFNKGQISLLSPK RDWILALAATIVLTLLLVIAGKNTFWLVLSLVLSWIIFYFIIKFDIQENGTEIFAIYGLG VIVFAFVSLLIVQGLNKKMLATYFATLVGVFVSFGICYLIMKLTGEAGMKYETVDYATQS PRSLFLAQALLGVLGAVMDEATDIVSSLYELTQHKKDLTVKQLLLSGRTMGQEIMGPLIN VLVLIFIAEALPMTILYLRDNNTLAFSFEFTLSLGAIQSLMSAIGICLTVIFASLTSLVF LKKRGD >gi|313656766|gb|GL545251.1| GENE 1566 1453584 - 1454336 722 250 aa, chain + ## HITS:1 COG:L17781 KEGG:ns NR:ns ## COG: L17781 COG5438 # Protein_GI_number: 15672790 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 21 249 21 249 253 114 30.0 2e-25 MTTLTALVLLLFVLMVLIGGKTGFNSFLSVMVNGILLVLVALLISWGINIFVLTLIFIPL KLAAIIFLGTHDMIVAKNSFYAAILVATVTILVIICLQYLAQAAGFGDEAGEELVGLSPY PGLSYPAIAITVAIFSTLGAISEASVAMSSGILELKKHNPEVTRNQLEKSGANIGKDVLG TSVNTILFGLFGSFLPLFIWYMRLNYPLGKILNDKLFVNEVLIMAYSIIGVALTIPLTSY LLAKKVSKKA >gi|313656766|gb|GL545251.1| GENE 1567 1454356 - 1457364 2878 1002 aa, chain - ## HITS:1 COG:alr4773 KEGG:ns NR:ns ## COG: alr4773 COG1501 # Protein_GI_number: 17232265 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Nostoc sp. PCC 7120 # 35 606 41 678 779 119 22.0 4e-26 MAQTIQGRHQLGALVGAQKAENFYELHYSSGETARLYILSDSIFRFYLDPKGAFQANALD LNLSSFDNSYHQKSSAKATSEAFIIQTGSIKLVFGQKPATLTIFDEQVHRNRLSQTSPLE IGDGASIEFLKQNQNEYYYGGGLQGGHFSHKGKKIQIKDLKVAGNGGVINPIPFFWSNAG FGELRNTNSNGTYDFGSKNSSNCLLSHNCEEFDTFYLIGNSPQSILQKLYQLTGKPFNLP KYALGLGYLGNFLDFTWKKSDNTNRTATKFEDGDYYEKATSPENVAAKASLNGEESAIFS ARAMIDRYHKMKFPLSYFIPDFGSQKPANLDELQSFNEYALSQGVMPGTAHVETLLANTQ LAYTNKQNEAKTYSALANSLKQQRPLVLTNNGNAKSFHTSALAFGEDGGEWDTLKNQIAS LLGLSLSGQAISGCAVDGLRGGGNATVSVRDFEWKSFTPLLFSMDGQGPTPKLPFVYNNK ISKINRAYLALRKQFSSYLYTLIKKAQNGDLIIRPLFMEFPHEKTNYSDEWANEFMLGED LLIAPITDGREDEKGYAIKDRLYLPDHRTIWIDLFTGKKYAGGRVYNNLSFPIWHLPVFV RSGAILSQGNRIFTIYPQGKKTAKILNDNNLNSDETYTTTITSNLNDDRLHLSFEPIENL CDGVAKDQATYLNILIDHYPGNVSLKINDEPVRLNESGSFNAFLTTKEGYYFNTNFIAAP AFSDFTKQRQTALQIKLAKRDITDTKIDIFIDNFHYVKANEAHAIIDSALRAPGKPSINP DKTTAHSLTAIWPNDAQVQIEVNDLIYDGISGKSFTFNNLKSETLYKMRLRYLSHNKVSE WSDYFGGRTKPSQYKFAVKNVKMHSSMLSQEGHDVALATDMLPASEWRTANKLTNEGLTL TFNFTQEEELSRMVYLPRTVDQVGRIIKASLAISKDGIHFEPYRDEINWPNDPKNKVVGL RDVKAKAIQMHITESSDGLVAAKQFYFFKPKNNFNIKKHKLA >gi|313656766|gb|GL545251.1| GENE 1568 1457509 - 1458669 1329 386 aa, chain + ## HITS:1 COG:SP2056 KEGG:ns NR:ns ## COG: SP2056 COG1820 # Protein_GI_number: 15901876 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pneumoniae TIGR4 # 1 383 1 382 383 369 49.0 1e-102 MTYYIHAAKFFLKNRTEFGGYLEVTDEGKFGFYYPENEKPNGKIKEYPGKAVAPGYVDTH IHGLLNEDVMKSNWQGINKISEGLLAAGVTSWLPTTITASNDTLTNICKMFAEHRGQERG AKIQGLHFEGPFFTPEHGGAENPKYMVDPDIKLFDGWRKASDNMLIKISMAPEREGSCEF IREAVKEGVTVSLGHSSSNFEDANNAVNAGASMFTHTYNGMNYLSQHTPNIIGAAFSSRL TDCELIADGHHVEIPALRALIQAKGYEHICLITDCMQAGMMPDGNYMLGELPVYVKDGMA RLVNGNNLAGSILLLKDAVKNLVDWDIVSREDAVMMASYVPAKSSKILDRCGVIAPDRAA DFLILNNDMTLVETYLDGVSRYKVEK >gi|313656766|gb|GL545251.1| GENE 1569 1458669 - 1459502 832 277 aa, chain + ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 277 1 277 285 143 31.0 4e-34 MIFEKSYNNSAALVKDEAGVEWIVIGKGIGFGKKAGDVIEEEKIERRFKNTDQDTTLKTV TSLSSLALSLTNKMVELSQRELGIKFDNYAYTSLADHVDFMLTRSKENLVLDNQMMQWEV IKLYPKEVAVAKELVTMVEKEAKVTLPDSEVVFLTYHLVNVGFDKETVQETMELSKLLDG ILRIVSLETGKKLDRTSFNYSRFVTHLRALLIQIIKKQERKNDGLDPIFGQLMKQKYPET SKVVTKIAYFIKEKTGYQLSEDDEVYLILHVWRVSNR >gi|313656766|gb|GL545251.1| GENE 1570 1459701 - 1461521 2047 606 aa, chain + ## HITS:1 COG:lin0026_2 KEGG:ns NR:ns ## COG: lin0026_2 COG1263 # Protein_GI_number: 16799105 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 89 475 3 389 399 368 52.0 1e-101 MAYEDLSKKIIAGVGGKDNVVSVVHCTTRLRFKLKDEKKAHDDELKNTDGIVTVVKSAGQ YQVVIGNEVADVYDTLIKVGGFSDGGQVADDYVDKSNMSIADKFIDIVSGIFTPFLGALA SAGMIKGLVAACASLGILSKASGAYQILYAIGDSIFYFLPIMIAVNAAKKFKVELFTAMG IAAAMLYPAIVAISSSKTTLMTIFKGTFLQSDVHTTFFGIPVIMMNYSSTVIPIILAVWF AGYVQKWVKSWVPAVVRTFLVPFFTLLIVVPITFIVIGPVATWLGDLLAAVTNGAYNLSP ILAAILMGAFWQVFVIFGVHWGFVAVFFANLAAYGFDKLLVLSSAASFAQIGVVLAILLQ TKNEKTKGLAFPAFLSGIFGVTEPAIYGVTLPRKKPFIISCIASALATIIIALGNVKLYM MGGMGIFLYPAAINPKTGIDKSFYFLIAATIVAFILGFVLQMLFGKDAVDAQDQEHIAND VQVAANEAKEIKKNAAVVKPSVDYNKPTTLVSPLNGELIPLSEVKDEVFSTKAMGDGAAI RPSEGVLRAPANGHVVLVFPTGHAIGMHTDDGAEVLMHIGMDTVNLNGKGFETLVKKIKL LKLVIH >gi|313656766|gb|GL545251.1| GENE 1571 1461710 - 1463164 1585 484 aa, chain + ## HITS:1 COG:CAC1405 KEGG:ns NR:ns ## COG: CAC1405 COG2723 # Protein_GI_number: 15894684 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 1 483 8 472 473 520 54.0 1e-147 MWGGATAANQLEGGYDEGGKGLSVTDITTAGSLEKPRMLTYMLNGKAGETPAMPGAGLPK GAKGAILPDEYYPNHVAIDFYHHYKEDIKLFAEMGFKTFRMSIAWTRIFPKGDEKEPNQA GLDFYRKVFEELKKYNIEPLVTISHYEDPLYLSEKYNDWQDRAMIDEYVKYAKVLFNEYK GLVKYWLTFNEINCSLLMLNLFGQKTNDDAVYQHAYQKLHYQFVASARAVKAAHEIDSNY VVGNMICGIVNYPLTPDPKDILANRYAWEQNIFYCGDVQALGEYPSYSKRLWNEHNVHLD ITDQDLADLKAGKVDMYTFSYYMSNVITTHESKDKVGGNFAAGAKNPYLKYSEWGWATDP VGLEYYLEVMNDRYHLPQMVVENGLGAVDKLTEDNEVHDDYRIDYLKQHIKAMKAAINNG VDLIGYTTWGCIDLVSAGTGQMSKRYGFIYVDRDDEGNGSLKRYKKDSFYWYKKVIASNG EDLG >gi|313656766|gb|GL545251.1| GENE 1572 1463615 - 1464532 521 305 aa, chain - ## HITS:1 COG:L0229 KEGG:ns NR:ns ## COG: L0229 COG2207 # Protein_GI_number: 15673492 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Lactococcus lactis # 29 280 27 271 327 80 28.0 5e-15 MYEHEFVKPVDQLAIWYHIFENNQSWNAYIPVHWHRGIELSYLERGLIDDFRIGDEHFAS KSGRILVVNTQEIHSIKTRVKQKDLALSIIYPYSYIEGLFPQINNYRIEINHPDKFTKSQ KVAYLDLKSKLIKFIATVQENSKDRNIQLSIISLEILDILLNNFIQKRKQLPAKKEVITQ RLQEIVEYITTNLKQDLSLEIIANECHISREYLARFFKKNMAMTVAEYIRYRRAISARKD LLSSNATLTKIAIDNGFSGIRSMNRALHEFYHEDAKEIRKREKIDNKNGISCCTIKYQIR SKKDS >gi|313656766|gb|GL545251.1| GENE 1573 1464568 - 1464774 316 68 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1122 NR:ns ## KEGG: LDBND_1122 # Name: not_defined # Def: hydrolase, alpha/beta domain protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 66 217 282 284 99 63.0 3e-20 MTANEDFLHDNAVRLDGFLRAKGIEHELHIYGTPDNPKQHVFHCNVRDEVGQQCNKDETD FFKRYIVK >gi|313656766|gb|GL545251.1| GENE 1574 1464771 - 1465451 929 226 aa, chain - ## HITS:1 COG:DR0821_2 KEGG:ns NR:ns ## COG: DR0821_2 COG0657 # Protein_GI_number: 15805847 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Deinococcus radiodurans # 41 145 1 103 242 79 39.0 5e-15 MADLPTSTEELRALFKKGDDARDAGLPTNIPEVERIDNLSYGPDKKWNLLDIYLPKNRTG KVPTIISIHGGGWVYGTKETYQFYGMSLAKMGFGFVNFNYHLGPDVVFPGILDDVQMLME WVEHNGEKYHLDLKNIFLLGDSAGGQMTEQYLAIATNDDFRKLFGYKPLNFKFNAAALNC GAYFMLDKGQTQGAVAAYFAPDAIKDKKELLNTEQYLTKNYHHYLS >gi|313656766|gb|GL545251.1| GENE 1575 1465654 - 1466853 965 399 aa, chain + ## HITS:1 COG:SP1600 KEGG:ns NR:ns ## COG: SP1600 COG0477 # Protein_GI_number: 15901440 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 11 368 7 364 383 112 24.0 1e-24 MKYNKNSLIFKIALLSISTLLMIAPAVSSALPLLYPAFSGVSKASVEGLVTLPNIGIIFG LILSPILIKFLGQKKTVLSGLVLALISGTFPMYASNFMMIAISRLLLGVGIGLFNSLAVS LIPQFYNDDEEETASMLGFQNVMGALGTALASFVLSWLVTINWHMAFGIYLLIIPVFILF ALFIPNDKANKTITKKAAPKNREKINSKLVVIWTVFFILFIFYMPISYKLPLLVTSEKLG SMSQYAALTGITGLCGIPLGASFGMFFKKLHDKIFPLGFLITALGFLLFGFATNLVMIFA GNIVLGFGAALAIPYLYNWISWAAPHGSVNLATTIALVLINIACSISPYILNSLSGLLGN STPRFAMFICAAAFILLTVYGLGHYLRVHRVNIKAKQQL >gi|313656766|gb|GL545251.1| GENE 1576 1466879 - 1467790 1039 303 aa, chain + ## HITS:1 COG:lin0770 KEGG:ns NR:ns ## COG: lin0770 COG1940 # Protein_GI_number: 16799844 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Listeria innocua # 5 290 4 282 288 171 34.0 1e-42 MTQYLAFDIGGTNLKYALLNNAGKIIEHDKVPTPADDLAAFLKEIYKIADHYQGQFEGIA FSVPGKVDTKTNTVYFGGSLPYLDGVNFQRLVGDKYLVPVGVENDGKAAALAELWLGELK GINNGAAIVLGTGIGGGIILDGKIWRGSHFQAGELSFMQTEGDKSGFDRFGCTYGSAVKM IESVNKLIGNSDLKDGYAAFDAINKGNAEAQKILERECKEVATIIFNIQSVVDLDKFVIG GGISAQPKVVETINKQYDLITNEVPFIAKMLTRPKIVRAKFMNEANIYGALYALLLKLNG EEE >gi|313656766|gb|GL545251.1| GENE 1577 1468045 - 1468404 276 119 aa, chain + ## HITS:1 COG:lin2339 KEGG:ns NR:ns ## COG: lin2339 COG0477 # Protein_GI_number: 16801402 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 5 98 4 103 402 69 40.0 2e-12 MKPNKNYLSTTIAIYLSFLLLGINMSISAQYKTELAHAWGAGNNISVVLTVSSAVGIGSL IASLFTGIISDKFGRRTSAIIGSFGWVIFAFGTAYAPNAVLRILLVLLLVLQCHLAIQH >gi|313656766|gb|GL545251.1| GENE 1578 1468416 - 1469264 619 282 aa, chain + ## HITS:1 COG:lin2339 KEGG:ns NR:ns ## COG: lin2339 COG0477 # Protein_GI_number: 16801402 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 266 130 389 402 147 33.0 2e-35 MEAYPDSRSLVTLLTKFFVSFGQFILPFIIIFLSAEKVPFTYVFNFIGIAYLIIGIICFL VPFPDSRISNQEKPVTKGAVRNGNVKISLEAVALCLIGFTSTAVFMLWTQTNQELGKAYG LTNPALLQSVYAVCSLISVLLTSFIIKNKGIKESTILTIYPVISALALVLAYLINSPIVL FIVSGFIGFFAAGGLLQLAISLMAGLYPQAKATATSTLFIANGISNWGVIQVAAIITTSF GTAAPRLILIFNILLCIFGAILGLIVKQNEIKQAINEKLALK >gi|313656766|gb|GL545251.1| GENE 1579 1469280 - 1470038 646 252 aa, chain + ## HITS:1 COG:CAC3665 KEGG:ns NR:ns ## COG: CAC3665 COG1073 # Protein_GI_number: 15896898 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 3 244 8 251 265 111 31.0 1e-24 MNEKDIKISRDGLNLAAKVSLPKNSTFDLAILAYGFVGEMNPRVNNLLPEIADKLQKRGI ATLRFDFNGHGESEGLLDNMSIYNELEDYHAVLNYVLNLKGLRKLYLVGHSQGGVLSSMM AGFYRDKIQKLVLMSPATTLVDDAKIGTCMGINYDPNNIPAKLDFGKFKLNDWYFRTAQF LNIYDVAQSYRKPVLILHGEKDKVVNNYASIRYHAIWPQSEIHLIAESDHGLHQNRQEVY NRVIKFLCDDLD >gi|313656766|gb|GL545251.1| GENE 1580 1470277 - 1471620 1808 447 aa, chain + ## HITS:1 COG:Z5177 KEGG:ns NR:ns ## COG: Z5177 COG1486 # Protein_GI_number: 15804281 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli O157:H7 EDL933 # 7 447 3 440 440 555 57.0 1e-158 MVKDDRKFSVVIAGGGSTFTPGFILRLINQQDKFPLRQIKFYDIDAERQKKIGDACAIII KERAPQIKFSYTTDPEEAFTDVDFVFGSIRVGKYEMRSHDEKIPLKYGVNGQETTGPGGM AYGLRSIPAIIQIIDYMEKYSPNAWMINYSNTIAIVSEACRRFRPKSKVINICDMPIDIM TRMAQICGLKDYHDLDFIYYGLNHFGWWKEVRNYKTGEDLMPKLKKYVRENGYYVGGDFD KETEASWVATFKKAKDCYALEPDTLPNTYMQYYYYPQYEVAHADPHHTRTDEILEHRQKI VFGECKRIVEAGTAKNNIWDKNAIHSEYIVDICHAIAYNTHEKFLANIPNNGAISNMPDD CIVEVPCLFGADGVQPIACGEAGRFQRGLMMEQVTCEQLVVDAYEQHSYEKMWQAFALNK TVPDALVAKKILDDMIPVNAPYWPELK >gi|313656766|gb|GL545251.1| GENE 1581 1471697 - 1473568 2101 623 aa, chain + ## HITS:1 COG:BS_glvC_1 KEGG:ns NR:ns ## COG: BS_glvC_1 COG1263 # Protein_GI_number: 16077887 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus subtilis # 1 447 1 444 452 504 55.0 1e-142 MMQKLQRFGAAMFVPVLLFSFAGIVVALCSLFTNPLIFGSLAKDGTFWNGIWNVIANGGW TVFNQVNLLFVVGLPIGLAHAAKGRAAMESLVIYLTFNYFVAGFLQYWGPFFGVNNYAKD LVANSTNGGLTMIAGIKTLNTSMVGALLVAGIVIYLHNHFFDKKLPDWLATFQGSTYVVM LGFFVMIPFAFLTCLVWPKIQLGITSMQTFIVHSGLVGVWIYTFLNRILIPTGLHHLVYI PFQFGPAVVEGGLQPYWLKHLAEFAQSSKPLSVLAPQLGFQLYGNEKVFLVPAICYAFYS TAKKNKKKQTSALLIPAALTSVFAGITEPVDFTYLFAAPVLWVIYSLLSATMNTTMCAFG VVGNMTDGAIGIAAQNWIPLWPHHWQTYIIQFAIGIIFAVIVFFVFKYMILKFNYITPGR EADDEDVKLLSKAEYKAKKAAEKAGSANANDPYIARASAYLELLGGPSNIEDLTSCATRL RVTVVNPNKVASDAAFKQNKAVSVVHHGKALQVIVGLDVAQVLERMQTMMQEQGHNNVAS TEVDPTLEKATGFIDLLGGQSNIDNLLSCATRLRVTVVDPSLVADEAAFKQVGAYNLEIK DKEVDIAVGLETDAIIAKMKEIM >gi|313656766|gb|GL545251.1| GENE 1582 1473690 - 1474463 683 257 aa, chain + ## HITS:1 COG:BS_yfiA KEGG:ns NR:ns ## COG: BS_yfiA COG1737 # Protein_GI_number: 16077886 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 256 1 249 254 72 22.0 8e-13 MNLQTRIYEKQGVLSESEKEIIQGLLSSAKENSQLSLKDLSKKLYVSESAIFRLCKKLGL SGYSELRFELLAASSVNHQPNNNFIKEMADLTTNTIKQFEARNLTNFYIDIPTAKNIYLY STGWQQELLASYISKELFLLGKQTVLLPSALDELKMRGQFFNKGDMLWTISYSGNNSAIV NELKKIRLIDDKLKLVSLTKMGSNDLATISDYSFFFQTIDFSYQNNGGGNPRSCFSPAYI LIDLLINGYFDWQQKKG >gi|313656766|gb|GL545251.1| GENE 1583 1474466 - 1474957 267 163 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_03055 NR:ns ## KEGG: LAC30SC_03055 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 2 161 4 165 165 96 34.0 4e-19 MISHLNFSSFLDRIVQNLKLTPKKLLKWYSYILILVPLACAVLVSLNLVTARTSFANLIR SQAGLAVGVIIALCDLIIGYFCLLNLSNFGKKKTYKRFMITQVITQALVGNFMCVIMGIL GIHLSKELKNEGQVNSKVKLVINFGTALLFLCFVLLIVIELKK >gi|313656766|gb|GL545251.1| GENE 1584 1474968 - 1475450 675 160 aa, chain + ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 12 158 4 150 151 130 45.0 1e-30 MFGLFKKSSKLKVISPVKGDLIPITDVNDDVFSTKMLGDGFAIEPIDGAVVAPLSGKITT LFPTKHALGITTDKGLEVLIHMGIDTVELKGAPFDVFVKMNQEIKAGDKLAQIDLDKIKQ AGLSDTIIVVYTNMDLLNSVSDVDPRPILAGDVVQEIEYK >gi|313656766|gb|GL545251.1| GENE 1585 1475714 - 1476877 897 387 aa, chain + ## HITS:1 COG:SPy1392 KEGG:ns NR:ns ## COG: SPy1392 COG0477 # Protein_GI_number: 15675316 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 377 19 397 398 379 55.0 1e-105 MIGSVYAWSVFTKPIAAETGWSIKAVTFAFSLAIFFLGMSAAFMGRLVEKYGPTVTGTVS AILFGLGVMLTGVAIGAHQLWLLYVCYGVIGGVGLGAGYVTPVSTIIKWFPDKRGLATGL AIMGFGFAALLTSTVANHLLSLKSVGLEKTFYILGAVYLVVMLLAAQLIKRPQPGEVPVQ TNLPKSSTGVQMKANDALKTPAFYCLWFMFFINITTGIGLVSMASPMAQEMVNMDAAKAA ALVGIIGLFNGFGRLIWASLSDYIGRPLTYTLIFVVDILCLGTILYLRQELLFSIALCLL LSCYGAGFSVIPAYLGDVFGTRELGALHGYTLTAWAVAGMVGPTIITYTSHGSDYSKTLL IFIIIDVISLLVSFFVKTQIKLMKKPN >gi|313656766|gb|GL545251.1| GENE 1586 1476920 - 1477795 1094 291 aa, chain - ## HITS:1 COG:L117718 KEGG:ns NR:ns ## COG: L117718 COG1940 # Protein_GI_number: 15673469 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Lactococcus lactis # 1 289 1 286 291 259 50.0 4e-69 MTNAKTVGSIEAGGTKFILAVQDIESGKVIATDRIPTTSRDETFTACVDFFKKNPVDALG IATFGPVDINPDSRTYGYILDTPKPGWSGANFKGFFEKELDIPVYITTDVNGSCYGEYIA RGADNTKTYLYVTIGTGVGGGIIQEGKFIGRNYHPEMGHMMVVKAEGDDYEGGCPFHGAC VEGMAAGPSLKARTGIPGEDLPRDHKVFSFLQYYVAQMLYNAYMTTRPDVMIVGGSVLNE DDLVQVRKYFDDLNNNYVATPALDELIVRPAVANNGSATLGDFELAKKLLK >gi|313656766|gb|GL545251.1| GENE 1587 1478076 - 1479785 1738 569 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 67 563 1 477 484 132 26.0 2e-30 MTKQTLQAEANGRNGKIKFDINIDNNEIKDIKVTKSSETPAIFDQVFDKLKNSIIEEQSF DVDAVSGATIMTSALLDSGKKALNQAGVTPVAKESDKTHREVNLDVDVAVIGSGAAGLIA ACRALSMGKNVVVLEKNGYLGGATILNGSNVVATGSNLAQQLFGTEAQEDSSKRLFADIT RECRGTNYPELSKVLVENIGKAVDFIKEFAGLTYQKAETQTIEHSVNRQVEMPSESSYEL IKKIAAAFEEKGGKILLDARVEKINSENGVPISLVAEGKHQTTNVKFKSLILAAGGWGAK DFKEKRTSIPYYGPMTSTGDYFFFNKGLNLASRNLDWYKVYPHGLEVEPGIAKLTTYSTK EASDMGAIFINRAGNRIVNESDPYTHFRDAIAAQKDQIAFVLMDQRIWNRFYELMLKYGF TADEISHYFALDGKQSPILVKGTLETVANKAGINFENLQHTLSNYQNYAKNGKDPEFGRE AKFMHEYSGDTYYVIEQKLRFCTTLGGYETNSQMQLLNNDMKPVANYYAAGEVIGGANGH DSMPSMMNSWSYASGFLAGTNASDNCNNR >gi|313656766|gb|GL545251.1| GENE 1588 1479832 - 1480752 199 306 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 1 248 1 242 305 81 26 1e-13 MNLRHLEFFVELAHTEHMARAAESLGISQPSLSYAINSIEDELGVPLFEKEGRNIKLTNY GRIYLKHVEASLDALKKGNEYVAELHDINQGHIHLGFTYTMGQDLVPELVSTFKNDPTAK KITFSYSQDITDKLIEELLEEKLDLVFASKATTPALVAQVNQFHLVNQELLAAVPFNHPL AKKDEVTLSELAKYPMVLYQRNSGLGIFLKKIFDQANIKPKVAVEVQEDHSVLGFVRYNF GVAIVPHMSQLSSGIVKLLPIKDKAVVHPIYAITKANHFLPPVVQRFQSYAEKYCRNSFN EKNTTI >gi|313656766|gb|GL545251.1| GENE 1589 1480903 - 1481826 1197 307 aa, chain + ## HITS:1 COG:lin0493 KEGG:ns NR:ns ## COG: lin0493 COG0169 # Protein_GI_number: 16799568 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Listeria innocua # 1 299 1 291 291 335 55.0 8e-92 MTNKITGVNGPINGWLDGHTYLIGLMAYPIRHSMSPTMHNNAFAKLGLNFTYLCFEIDNK KLPKAVEAIRTLDMRGSNVSMPNKKEVIKYLDKLSPASEMCDAVNTIVNDNGVLTGYTTD GIGFMKSLEDEGIDIRGKKMCLAGAGGAATPIAVQAALDGVSEIEIFNLNDDKWAQAEKN VKTINEKTNCKASLHHLEDKDDFKRAISECDIYCDATGVGMKPLEDMTLVEDPSWFHEDM TVFDTVYAPRTTKLMKVAQKAGVKHVLNGIGMMIEQGVAAFKLWTGKDMPTDYIREVIFE NDAKDNK >gi|313656766|gb|GL545251.1| GENE 1590 1481925 - 1482134 186 69 aa, chain + ## HITS:1 COG:STM1361 KEGG:ns NR:ns ## COG: STM1361 COG0477 # Protein_GI_number: 16764712 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 68 21 88 403 70 51.0 7e-13 MGVIILSQNAANLAHQWGTTETGALAVVSSLGIGRIINLLVSGVLSDKFGRKPFVQLGIV TYFIFLLAF >gi|313656766|gb|GL545251.1| GENE 1591 1482182 - 1483042 708 286 aa, chain + ## HITS:1 COG:ECs2397 KEGG:ns NR:ns ## COG: ECs2397 COG0477 # Protein_GI_number: 15831651 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 282 107 389 404 204 44.0 1e-52 MANSFLDTGTYPGLMEIYPNSKGTSNVVLKAFISAGQFFLPFIVSFLAATHMWYGWSFLI PATILVITFLYFMFGGAFPDSNSTSKTVEEKITNNNVKTNLWLDGTLFIIYGYISQATFY LVSQMLTQYGQKIGNLPQVAAHSLVSWYSLGSIICVLTTAALGKKFSEIQFVPVYTLGAF ISLGLMWIYPTNANLMIILSLLVGFFAAGGVMQLALTVMAEFFPAGKGTVTGFFYTAGSI ASFTIPLAINWIGNMRNVMLFDVIIALIGFIDTSLIAMRYKKCLVN >gi|313656766|gb|GL545251.1| GENE 1592 1483059 - 1483253 195 64 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1836 NR:ns ## KEGG: MPTP_1836 # Name: not_defined # Def: 3-dehydroquinate dehydratase I (EC:4.2.1.10) # Organism: M.plutonius # Pathway: not_defined # 1 53 1 53 259 63 56.0 3e-09 MATVKIRNLVLGEGLPKIAVPNVGKTREEIISAAKEIIQAKPDLMEWRIDYFEAGINNFD ELKR >gi|313656766|gb|GL545251.1| GENE 1593 1483274 - 1483816 608 180 aa, chain + ## HITS:1 COG:lin0494 KEGG:ns NR:ns ## COG: lin0494 COG0710 # Protein_GI_number: 16799569 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Listeria innocua # 1 172 72 243 252 170 50.0 1e-42 MEEIPILITFRTKNEGGVLSLPEERYLSLLDQIIVNRLGDAIDIELFHNEDTIKGLVEKA HQYNVIVVMSNHDFDKVPSKDIIEFRLKKMAELGADIPKFACMPHSSMDVLTLLMATTVV NENISNPIITMAMGDLGKVSRIAGQVFGSSLSFGAVGQTSAPGQLSISDLRNAEKYLELH >gi|313656766|gb|GL545251.1| GENE 1594 1483834 - 1484331 328 165 aa, chain - ## HITS:1 COG:lin0491 KEGG:ns NR:ns ## COG: lin0491 COG0583 # Protein_GI_number: 16799566 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 2 135 140 273 297 70 33.0 9e-13 MSEKVDLAIVANPDDLESVNLTHLFDQKLYLAVSINSPLAKQDKISVNDLASYPLITYPH INCLRQNIDTFFERAGIEPNISMVLADTAPIMNFVNSDFGVAIVPKSNLINQKEIKFLEI DSKAAINPVYVATKKIISYLLQPNDYLLILKTIIKNKNKTVKALL >gi|313656766|gb|GL545251.1| GENE 1595 1484328 - 1484741 507 137 aa, chain - ## HITS:1 COG:lin2335 KEGG:ns NR:ns ## COG: lin2335 COG0583 # Protein_GI_number: 16801398 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 135 1 135 292 119 47.0 2e-27 MNLRHLEFFVELAHTEHMAKAAENLGITQPSLSYAISSIEKELGVPLFEKDGRNIKLSKY GKIYLRYVKAGLADFSKGNTYISELVDTNSGTVRFGFSSAAREIAPVLVNAFKHENPEQH LNFYFEQDVTSVIIQNY >gi|313656766|gb|GL545251.1| GENE 1596 1484900 - 1486129 1132 409 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 130 407 207 465 466 118 33.0 2e-26 MAKKILTGKHSKTVADNWFKNNKVLITLFSAIILLSLAGGFIYHNHLEAQRQATLRYTSK HFNKNVKIFGIKVGGLTINQAVTKINKNAKTAATMTDGKITSMKLDGVQVTDKKEITKYF KKQHTAFPSDKKWNFADSTLKEAKKKLANFYNAKTTYKVGGKTFTLEAKKLFKTVRYYGG QFHFTDTSTLSAKLAKINSEVSTLDKSYSFTTPNGSTINVTNKSYGWAINNKTAIPAIEK ALGSDTATVDGANYIYGKGYSTYGTGYTTINNGLGKNYVVVSIKEQKLWVIKNGSVAVTL NDVVTGTAQTSSGSSDATPTGVWYIEYKQSPSILRGTNDDGSSYSSKVNYWMPFTLTGCG LHDASWRTDWSKTAYLKGGSHGCVNIRPSEIKKVWDAVEMHEPVIVYDK >gi|313656766|gb|GL545251.1| GENE 1597 1486241 - 1488778 3218 845 aa, chain + ## HITS:1 COG:L102360 KEGG:ns NR:ns ## COG: L102360 COG0308 # Protein_GI_number: 15672287 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Lactococcus lactis # 4 841 3 842 846 838 50.0 0 MGKINRFYDTFHPNHYDLFINVNRADKKINGTSTITGEALNKEVNVHQKFMSISKVTQDG EAVPFEVDQKAEAIKITLAKAGNTTISIDYSAPLTDTMMGIYPSYYQLNGKKEEIIGTQF ETTFARQAFPCIDEPEAKATFSLALKFDEKPGEIALANMPETKVENGVHYFEKTVKMSTY LVAFAFGDLQSKMTETKSGVKVGVFATKAHKAKELDFALDIAKRAIEFYEDFYQTPYPLP HSWQLALPDFSAGAMENWGLVTYREAYLLLDPDNTPLDMKKLVATVITHELAHQWFGDLV TMKWWDNLWLNESFANMMEYLSLDHLEPSWNVWEMFQSSEAPAALTRDATDGVQSVYVEV KDPAEIDTLFDGAIVYAKGSRMLVMVRALLGDKALQKGLKYYFDHHKFGNTTGDDLWNAL STATDLNIAEIMHSWLNQPGYPVVNAFVEDGHLKLTQKQFFVGEGEDKGRIWQIPLNANF DSPAIMTEKELDLGDYETLRKQAGHALRINVGNTTHCVVKYDETLMNDILAEVEDLDSIS KLQLLQDLRLLSEGRESSYAEVVPLLDKLKDSKSNLVNNAIYTTARKLRQFVTPDSDAEN YLKQFYNRLSEDQVKRLGWEVKAGESDEDKLTRPYVLSASLYGGNIDSVRAAHKLYQEHE DDLESLNADVRPYVLINEVKNCGSSELTDKLIKLYQTTSDASFKSDLTAAITSSKSESEL EKVVSYFKNADVVKPQDLRGWFASVLNNKLGEQLAWDWIRDEWAWLDKTVGGDMEFTTFI TVIARNFKTAKRLEEFKAFFEPKLDQPMLTREIKMDTKVIGTRVDLVEAEKVKVNQVVKS LFVEE >gi|313656766|gb|GL545251.1| GENE 1598 1488809 - 1489471 447 220 aa, chain - ## HITS:1 COG:no KEGG:lhv_1884 NR:ns ## KEGG: lhv_1884 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 220 1 214 214 204 49.0 3e-51 MNPDYGIILNFKVNANANAQKLVRLARNIGARAISVEGAEDLAPYKEACKDYTVELVNAH GIDLESANVINDLINFKRNGQHAVFNVELDEMGDLLDNQKTALTLLNDWMHWFGHAYNES TESSLKTTASNSFVCENRHASYQVYVFIKSPLPETITVSGFEQEPMRIEWIDERAELSFD FQDNAAKIELSPYPEGIDYKWRVLRIMKHRPEDDIKETQF >gi|313656766|gb|GL545251.1| GENE 1599 1489574 - 1489948 359 124 aa, chain + ## HITS:1 COG:no KEGG:LBA1843 NR:ns ## KEGG: LBA1843 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 102 1 102 253 119 54.0 4e-26 MKTIISPAKKMIVNQESFLAKTRPDFLEQAEILADFLKNQEAGRLKQIWEASDKIVQEGI MQLKNMDLEKAQTPAIISYGGIQYQYMAPDLFTEPALIYIQKTCEFFLVYMEFYVLLMQL VLIA >gi|313656766|gb|GL545251.1| GENE 1600 1489882 - 1490157 127 91 aa, chain + ## HITS:1 COG:VC2355 KEGG:ns NR:ns ## COG: VC2355 COG3022 # Protein_GI_number: 15642352 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 1 69 108 181 257 77 50.0 5e-15 MRILSGLYGVLRPFDAVSPYRLELKNKLVGFKDYSLYHFWDSLIHDKLFEDDDTVINLAS KEYAKAVTPYLHEGERFITIDFLEKEKINGK >gi|313656766|gb|GL545251.1| GENE 1601 1490154 - 1490333 125 59 aa, chain + ## HITS:1 COG:no KEGG:lhv_1883 NR:ns ## KEGG: lhv_1883 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 2 59 196 253 253 75 56.0 8e-13 MIGTHAKMSRGEMVRWISENQIKTPEELQAFNDFDYKFDELTSSADKYIFKTQYDFKRH >gi|313656766|gb|GL545251.1| GENE 1602 1490705 - 1491070 551 121 aa, chain - ## HITS:1 COG:CAC3665 KEGG:ns NR:ns ## COG: CAC3665 COG1073 # Protein_GI_number: 15896898 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 23 117 32 130 265 77 43.0 6e-15 MSIFTIQRDGLNLVCERENPFGEKYDLAVIMHGFTANRNTALIKEIVNKLRDENVASIRF DFNGHGDSDGAFENMTVWNEIEDANAILSYVKSDPHVNHIYLVGHSQGGVVASMLAGLIP I >gi|313656766|gb|GL545251.1| GENE 1603 1491147 - 1491746 609 199 aa, chain + ## HITS:1 COG:CAC1385 KEGG:ns NR:ns ## COG: CAC1385 COG0406 # Protein_GI_number: 15894664 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Clostridium acetobutylicum # 1 189 2 184 191 105 34.0 6e-23 MKLTFIRHGQTDLNKDNRIQGGGIDQPLNETGINQAEVAASHFDPQKYDLVFSSPLKRAK KTAEIFVKGQKQIYFDDRIKEMDFGEWDTLKVDELIKEYPKGFNEDGYVANGYLRYAPGG ESFEEVASRGSEFIDELIHKYPDKNILVVCHGTLIKTLVAHYFSNGNLGVFEQVANCAIS EFEMTENFSKVICYNQVLY >gi|313656766|gb|GL545251.1| GENE 1604 1491858 - 1492928 1114 356 aa, chain + ## HITS:1 COG:CAC2542 KEGG:ns NR:ns ## COG: CAC2542 COG0277 # Protein_GI_number: 15895804 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Clostridium acetobutylicum # 4 340 5 341 467 286 41.0 5e-77 MCTYNKLTKSDIENLSEFISDSERFITVPTEHWDHDQFKVVRAMPDLVIQPITSEEVAKV VKYASDHKIPLVPRGNSTGLMGANLTVHGGISLDMVKMNQVLDYDPDSLTMTVQPGLRLN DLEKYLSDKPFTYMPAPAMHWATIGGNVATNAGGLKAIKYGVTREHIREVKVALTDGKIY KFGSKSVKSSSGYSLKDLIIGSEGTLGVITEITIRLYPKPKKVINAIIPFDTLENAIKSV PKILASGVVPTTVEFMGRKVLQLWEKAYDETFPIKDGDGFIIIGLDAFTDEELHAQLKEA IAATAEYHAMKPIVLDATSKEAELIWKAREALLLAIQKSTPKWMKLMYQYQLIEFH >gi|313656766|gb|GL545251.1| GENE 1605 1492883 - 1493263 363 126 aa, chain + ## HITS:1 COG:FN1536 KEGG:ns NR:ns ## COG: FN1536 COG0277 # Protein_GI_number: 19704868 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Fusobacterium nucleatum # 1 122 350 471 475 112 40.0 2e-25 MDEVDVSVPIDRIPLVLKRIEELEQEEKMRIPNFGHAGDGNLHIYLCSDEMDDEEFAKKS HIVISELYKVARDNDGNISGEHGVGYARKDYYEDFYGKDYTNLLRKVKSIFDPNGIINPD KIFPLK >gi|313656766|gb|GL545251.1| GENE 1606 1493378 - 1493878 425 166 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 72 1 72 189 63 44.0 2e-10 MVKSTFQNLNQGKKKRVTEALIDEFSSYSLADAQVARIVKSSGIARGAFYKYFDDLTDAY EYVYQLVMKDIHTGLRPSKAFDVELLYQMTADFVGKSEQSPYLAFIKLHLSKNEVMLTPD FKQKAIRLKNLDAKTWSAMVLSHETIKLVLFDPDHKISILNVLNIV >gi|313656766|gb|GL545251.1| GENE 1607 1494109 - 1494534 288 141 aa, chain + ## HITS:1 COG:SA0296 KEGG:ns NR:ns ## COG: SA0296 COG0577 # Protein_GI_number: 15926009 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 3 116 72 181 349 67 38.0 1e-11 MTKQDIPNKLSTNEALVGQTPLVIKNKKKATISAQFVGIKASQYIYKNLVITSGRKAKSK NEVVVSQILKNKGYKLGDKLTLNGSTDKYKIVGFTKNAMINIAPIIYGNLATWRKLRSVN NEIVASGIISKKVILKSIAKM >gi|313656766|gb|GL545251.1| GENE 1608 1494605 - 1494958 402 117 aa, chain + ## HITS:1 COG:SA0296 KEGG:ns NR:ns ## COG: SA0296 COG0577 # Protein_GI_number: 15926009 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 1 116 234 349 349 84 38.0 3e-17 MIGFLFIISLIIVAVFLYILTMQKLPNFAVMRAQGIPSKTLIGFTVSQSFILVLFASLLA LVLMELTVLTLPAAVPMQFSPTIAIAGLLGMLIMGVIGSLIPVRSILKVDPTMAIGG >gi|313656766|gb|GL545251.1| GENE 1609 1494959 - 1495525 224 188 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 188 1 185 223 90 31 2e-16 MMSTIELKNIKKIYGSGNAQTIALKGVDFEAEKGEVVLLEGPSGAGKSTLLTIMGSLQKA SSGTILFNGENVTEFSDKQRDNLRLNKIGFVLQAYNLVPFLKVKEQFELVNRVKKTGNLS SDELADLVKLLGIEQLLNKYPNELSGGQMQRVAIARALYANPQVILADEPTASLDSERVK EVGALFKN >gi|313656766|gb|GL545251.1| GENE 1610 1495676 - 1497088 1595 470 aa, chain - ## HITS:1 COG:SPy0713 KEGG:ns NR:ns ## COG: SPy0713 COG4690 # Protein_GI_number: 15674771 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 1 466 1 470 472 291 35.0 1e-78 MITKHGRSACTSILIGKKASINGSVIIGRNEDCKTAWPKHLKFNPAAICAHSHFSSNDNN FEMDLPDKSYAYSSTPEWTDKYGVFEEDGINEYHVAMSATESAYANGRVLAVDPFDTEKG ILEEAMVTCVLPYIKTAREGVERLGKIVTEHGAAEADGILFADPDEAWYLEIGSGHHYVA QRIPDDSYAVVSNQLAIQEVDFTDHLNFIFSPDLQNFVYQNNLWPKDRTFNFREIFGTQD DSDLHYNTPRVWAGQKLLTPSKKKEPQDFYLPFLEKPDRPITIQDAQRVLKDHYQNTPFD LTNKKNSSNATFRPISVATTQESHLLELNGENMIQWLCMGITSQGVYIPFYPQGTKTPAM WDKGTETYSSDSAYWVFKLASVLADRDWGKYGKDLSTTQDNTSKELMQIRHEYDQKLLSV SDREKEIELVDEANEKMANLAVQNYQALIAQLITKQTALSPLSFTMDPNL >gi|313656766|gb|GL545251.1| GENE 1611 1497170 - 1497337 104 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313472991|ref|ZP_07813478.1| ## NR: gi|313472991|ref|ZP_07813478.1| conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 1153] # 1 48 8 55 62 82 100.0 7e-15 MEDKKITLTTDYANSSINIDFSDNLTDEGERGYILSASFYHMQLVKAYLKKKLLK >gi|313656766|gb|GL545251.1| GENE 1612 1497595 - 1498047 572 150 aa, chain + ## HITS:1 COG:no KEGG:lhv_1873 NR:ns ## KEGG: lhv_1873 # Name: not_defined # Def: transcriptional regulator # Organism: L.helveticus # Pathway: not_defined # 1 149 56 204 212 174 59.0 8e-43 MEDLRTQVLEIISVNLKTKILQKSYTGGALIDLDLSYINFAKEHVDLFRAMFVDGKLGSA IIADTLLNLGIEKFNEEYSKYNLSEKKTKQVVMANWISATGIAALIINQVATFSEEQIVN VLKAQILDAIDNENLSQVENNPMFSTSDKE >gi|313656766|gb|GL545251.1| GENE 1613 1498146 - 1498682 577 178 aa, chain + ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 163 1 166 187 142 43.0 4e-34 MKILAIVGSNAENSYNRKLLLAIKNRFTMHNIELAEIKDLPLYKEGQDTPQVVSDLANKI EAADLVLIGSPEQQHSVTSALKSALEWLSSNLHPFKGKPVFIVGTSPLAQGSGRSQTRLK NILAAPGFSCPVFNGDEFMLGLASKAFNEDGEIKDERTLEFLDHFFGEVEEWYEQITK >gi|313656766|gb|GL545251.1| GENE 1614 1498695 - 1499243 752 182 aa, chain + ## HITS:1 COG:SP1471 KEGG:ns NR:ns ## COG: SP1471 COG0431 # Protein_GI_number: 15901321 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 182 2 181 201 144 44.0 9e-35 MKLLAVVGTNADFSFNRFLAKYIAKRYGDKAEIEVAEINTLPLFNRESSGDENVENWREK VKSADGIILTTPEYDHAIPAALKSALEWLGSHSGADLMNMKPAMVVGTSYGMMGAARAQE EAREILLAPDMSANVLPGNEVLIGRAADNFDKETGDLINQSYIDQLDIVMENFIKFVAQS QK >gi|313656766|gb|GL545251.1| GENE 1615 1499356 - 1500318 719 320 aa, chain + ## HITS:1 COG:L143292 KEGG:ns NR:ns ## COG: L143292 COG3589 # Protein_GI_number: 15673111 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 313 1 313 353 225 40.0 1e-58 MLGFSINLGEPLTAQTHNYILKMRNVGFKGIFTSLQAPEQDSDQVLKGLTELKKWCHDLG LELVGDISKAGMKKLGLEADLTSLKSLGLTGVRIDAGFDNDEIAKISKEFRVALNASTIS EEDVISLRENQADFDHLEAWHNYYPRPNTGLDREWMIERNKWLKSYGFKVMAFAPGDGIK RAPIFESLPTLEEHRNVSSFFASLALFKMGLDYVFIGDCDLSNESFDQFSEYLNKKAILL HLTENNNITEQLVKHSWHQRADLSRDVIRLEEGRSRQLFSQAKLQAGKRSKGIITSDNEQ YLRYEGELEIAKKIYQKISV >gi|313656766|gb|GL545251.1| GENE 1616 1500498 - 1500824 191 108 aa, chain + ## HITS:1 COG:lin2049 KEGG:ns NR:ns ## COG: lin2049 COG2365 # Protein_GI_number: 16801115 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 4 91 76 165 326 60 35.0 5e-10 MQAKVLPLKTIRNPRDLGGYVTKDGHKVKMQRLLRTGRICNLSKHDQQYLINYGLRKVID LRSEKERKQDPDTFISGTKHFNISISPEDNTEAGTSFEDLFKNLMIIQ >gi|313656766|gb|GL545251.1| GENE 1617 1500860 - 1501279 454 139 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 2 138 161 297 298 69 29.0 2e-12 MITRPHSQRAFHSILEEMANTPEGAIIFHCSEGKDRTGLTTFFILYILGVDLETIRQDYL FSNYMLNDYRAKRDLEAKEKGSSLAFRANLRSLGSVADEYLDNAIITMCEEYGGIDSYIK NQLLVSDELINLLRKLYLE >gi|313656766|gb|GL545251.1| GENE 1618 1501296 - 1502225 950 309 aa, chain + ## HITS:1 COG:L171943 KEGG:ns NR:ns ## COG: L171943 COG1477 # Protein_GI_number: 15672350 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Lactococcus lactis # 1 301 3 305 325 343 52.0 2e-94 MIEDLATHQVVKKHHALGTSITLQLFGTDQTWILDQSVKLIDYYEDLFTVNRDKSEVMDI NHAAGLHPVQVSSATYSLVKLAVEKSLENFGFNALIGPVVKLWHIGFKGARVPSQSEIDE KMKLIDPQKVVLDDKQQTVFLEEKGMELDLGGIAKGWIADRIRDQWRSFGVLAGIINLGG NVLFVGPSPKRLSGKWSLGVQDPIEKRGKNITSVMVSECSAVTSGIYERYLEVNGHKYHH LIDPRTGYPVETKLAGVTTFTKNSVDAEIECKRLFFAGKPVANWLNENRIGAVFVYQNEE VIYEGFDGK >gi|313656766|gb|GL545251.1| GENE 1619 1502255 - 1502518 187 87 aa, chain - ## HITS:1 COG:no KEGG:lhv_1868 NR:ns ## KEGG: lhv_1868 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 87 91 178 178 110 64.0 1e-23 MFSKWLPTKKNEKNFSSLLDGTLGALASLIAAYLFVYVILSMCNALQNQWFIQQTVDSPF LHFIIYQTPGLSNGVFNNLFSIGKTAG >gi|313656766|gb|GL545251.1| GENE 1620 1502440 - 1502784 230 114 aa, chain - ## HITS:1 COG:no KEGG:LJ0553 NR:ns ## KEGG: LJ0553 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 101 1 101 178 89 46.0 3e-17 MIVTILVLLYLGWQTYKGFQIGFTRKIVNLILSAVFFSLAIILQNPLGNFLYSQYSGQST TTASNQMELMAARFIAFFIIFYASKHIKRCLANGYQLKRMRKILAHYLMVHWEL >gi|313656766|gb|GL545251.1| GENE 1621 1502962 - 1503756 671 264 aa, chain + ## HITS:1 COG:SA2499 KEGG:ns NR:ns ## COG: SA2499 COG0357 # Protein_GI_number: 15928295 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Staphylococcus aureus N315 # 1 224 1 222 239 232 54.0 6e-61 MKPELFIKQLAEKGFALNQKQIDQFSKYYKKLIEVNEYVNLTRITDLEEVYLKHFYDSLT PFLEYPDLFKKGHICDVGAGAGFPSIPIKILVPEMQLAIVDSLNKRLKFLADLTADLDLE QVELIHGRAEDVGQNEKYREKFDLVTARAVANMATLSEYCLPLVKKGGQFLALKGPKAES ELADAKKAIAVLGGQITATKSLQLPESDEERTLILLNKVKQTPKNILGKRAHLTASHFIN GGIEQWHSFFLRKTKFQKKNKFKI >gi|313656766|gb|GL545251.1| GENE 1622 1503696 - 1504538 773 280 aa, chain + ## HITS:1 COG:lin2926 KEGG:ns NR:ns ## COG: lin2926 COG1475 # Protein_GI_number: 16801985 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 15 280 24 283 284 197 46.0 2e-50 MAFFFSKKNEIPKEKQIQDLELSKIIPNRYQPRHEFSEASIEQLAQTLEQEGLLQPIVVR EKGDNYEIIAGERRFRAAKSLNWTTIPAIVQNMDDQKAASLALIENLQRENLNPIDEARA YEDLMKLNELTQTALAKDMGKSQSYIANKLRLLKLEPEVQSYLVSGTITARHGRAMLGLT PVEQSHVLHEILQKKLSVKETEAICEDVDGYFAKKAEEVKKPAKKEPEKKRVVKTAKDLK VQINTIKQAVKLAKDSGIQVKSHEEKTDDGYKITIELHRK >gi|313656766|gb|GL545251.1| GENE 1623 1504551 - 1505285 530 244 aa, chain + ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 207 1 207 253 283 68.0 2e-76 MVNIISIANQKGGVGKTTTTINLAASIANRGYRVLIIDIDPQGNATSGLGIEKSTIHQDI YNVLVDEIPITDTIHHTSTKNLDIAPATINLSGAETELISMMARETRLKSALDQVANDYD FAFIDCPPSLGQLSINAFTASDSILIPVQSEYYAMEGLSQLLNTIRLVQKHFNKDLDVEG VLLTMLDARTNLGAEVVKEVQSYFSKKFIKLLFRESLNWLKLQVMVSQLLNMILSRVVQS CMMI >gi|313656766|gb|GL545251.1| GENE 1624 1505307 - 1506215 1032 302 aa, chain + ## HITS:1 COG:BS_spo0J KEGG:ns NR:ns ## COG: BS_spo0J COG1475 # Protein_GI_number: 16081148 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 15 296 4 277 282 266 54.0 2e-71 MARDSRNNELRKKGGLGRGIEALFEDTPTQIVQSVDGTEEVEELSLEDIRPNPYQPRKNF DDKSLKELSDSIKENGVFQPIIVRKSLDGYEIIAGERRFRASKLAKKSTIPAIIRDFDEA QMMEVAVLENLQREDLSPLEEAQAYEMLQKNLGLTQEEVSKRMGKSRPYIANYLRLLTLP KKAKKLLQHGELSMGQARTLLGLKDKEKIDDLAKKVVKEGIPVRKLEVLVSAMNEKANKV SKSDKIRKSAFIRASESRLSTKFGSPVSISESKKGKGHLSIDFNSTDDLNRILTMLGIDL DD >gi|313656766|gb|GL545251.1| GENE 1625 1506208 - 1506468 301 86 aa, chain + ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 8 67 5 64 65 74 48.0 4e-14 MTDTKLAYQLADTVLLKKPHACQVNNWEVLRLGADIRLKCMGCGHILMMPRADFNKRLKK ILTKANDPVNKKLEHYLPKENIAIPK >gi|313656766|gb|GL545251.1| GENE 1626 1506495 - 1507100 790 201 aa, chain + ## HITS:1 COG:lin2919 KEGG:ns NR:ns ## COG: lin2919 COG0012 # Protein_GI_number: 16801978 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Listeria innocua # 1 197 1 197 366 262 69.0 2e-70 MSLTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIEPNVGMVEVPDPRLARIDELIPA KKIVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIIHVVRSFDDDNITSVTGKVD PEEDINTINLELAIADLDAVNRRIGKVEKLVKGNDKDAKAELAVLEKIKPVLEEGKAVRS IDFKDDEKKIVKGLFYLPQSQ >gi|313656766|gb|GL545251.1| GENE 1627 1507130 - 1507594 633 154 aa, chain + ## HITS:1 COG:SPy0006 KEGG:ns NR:ns ## COG: SPy0006 COG0012 # Protein_GI_number: 15674254 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pyogenes M1 GAS # 1 154 218 371 371 190 64.0 7e-49 MADPESDKYFQIVKKHAESENAGAIAISAATEEEIAGLDDDEKQEFLEAEGVTESGLDRL IKAAYHLLGLRTFFTAGGPETRAWTFHEGMKAPQVAGVIHSDFERGFIRAEVVSFDDLDK YESMQKVKEAGRLRLEGKDYVVQDGDIIEFRFNV >gi|313656766|gb|GL545251.1| GENE 1628 1507605 - 1508330 695 241 aa, chain + ## HITS:1 COG:L196216 KEGG:ns NR:ns ## COG: L196216 COG4858 # Protein_GI_number: 15672175 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Lactococcus lactis # 32 241 1 213 219 66 24.0 5e-11 MDTREKNLANTQKQEASQAKVEKQTSSVIQDVDSMRKQLTNKNSDYVFRLEKALMDAGKS EAEATKIANDLLDEIITAQKQGIPASNLYKKSPILKAEEILHPVIKPKKPKYWMRAVDSG LLYFVVFTAMISIMALTAGAKNQYNSQYGLLTLVAIAAILGTLMTYYTDVLVAGGKAKFG KIALLTIAMVAVLFVVITIFSSKAFQIINPVLPAWANLVLAALVYGARYLFRKNTILQQV F >gi|313656766|gb|GL545251.1| GENE 1629 1508548 - 1508943 445 131 aa, chain + ## HITS:1 COG:CAC3414 KEGG:ns NR:ns ## COG: CAC3414 COG1132 # Protein_GI_number: 15896655 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 1 125 1 125 577 127 49.0 4e-30 MIKTLMKSIRQYRKESILSPIFVTVEVFIEMFIPYVMAWLIDDGIMKGNTSLITKLGLFL LLMAFISLMFGIGASYFSAKAAAGFAANLRKDMFYNTQNFSFENIDKFSSSSLVTRLTTD INNIHGLSNGN >gi|313656766|gb|GL545251.1| GENE 1630 1508921 - 1510273 194 450 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 226 433 17 228 245 79 28 5e-13 MAYQMVIRIAVRAPLMLIVSIVMAFVVNAKLAIQFVIIAPIMAILLALIIKNAFPFFPKI FKNYDKLNQTVRENVRGVREVKTYVHEQEQIDKFSESSNMIYKLFSGAQKIIALNAPVMM LLLNGSMLLLSWFGAKLIVGHEMQTGQLVSMFSYSNSVLFSLMILSMIFTQLTISQASGK RITEVIEEKSTITQPTQHPVTDLTNGDIVFDHANFKYEKDSDVLALSDINLHIHSGETIG IIGETGSSKSTLVAMIPRLYDVTGGAVRVAGHNVRSYDLKTLRDNVAMVLQNNVLFSGSI KDNLRWGNENASDEEIIAAAKVAHADGFINEFPDGYDTMIEQGGNNVSGGQKQRITIARA LLKKPKILILDDSTSAVDTKTEKEIRLALKRDMPNTTKIIISQRIVSIKDADRIIVMNHG RIEDIGTHDELIERNDLYSSLNKYQSEKEK >gi|313656766|gb|GL545251.1| GENE 1631 1510282 - 1510491 310 69 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1893 NR:ns ## KEGG: LDBND_1893 # Name: not_defined # Def: ABC transporter, ATP-binding/permease protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 5 68 10 73 614 73 48.0 3e-12 MKNQNQKHTFWRLLKYIVKTGPVAFPLAIIGIIVSAFSTVYGSLFIQQLIDKYITPLLKQ ANPNFTPFV >gi|313656766|gb|GL545251.1| GENE 1632 1510562 - 1512103 1650 513 aa, chain + ## HITS:1 COG:CAC3415 KEGG:ns NR:ns ## COG: CAC3415 COG1132 # Protein_GI_number: 15896656 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 3 512 102 626 627 553 54.0 1e-157 MVLAQKVQKSIRDKMFKHMQYLPIAYFDQNEYGDIMSRYTNDIDTLMQMISQSIPQFVSS TLTIVFVLGSMLVLSWQLTILTLVIFLLSVGIVRYLTKKSGHYFKLQQEKLGAMNGYNEE MLSGLKVIKVFSHEPYVKNDFDKYNDELRQASGLANVYATVLFPIMGNVGNISYVLIALI GGLGAINGFFPLTLGAIASFLQLSRSFSMPIAQISQQLNSIVMAMAGANRIFNVLDKATE VDEGRVTITHKTGVKNAWNWRKANNELVPVKGHIKFDHVDFGYVPNKQILYDINIDAKPG MKVALVGETGAGKTTISNMINRFYEINSGSITYDGIDVKDIKKDDLRKSVAIVLQDTHMF TGTIMDNIRFGNPDASDDEVYQAARLAHADEFIHELDNGYQTVIDGSGGDLSQGQMQLLS IARAMIADRPVMILDEATSSIDTRTERIIQKGMDNLLAGRTSFVIAHRLSTIVNSDLICV LDHGHIIEKGSHEELLAKKGYYYELYTGKKEIE >gi|313656766|gb|GL545251.1| GENE 1633 1512208 - 1512894 889 228 aa, chain + ## HITS:1 COG:CAC0830 KEGG:ns NR:ns ## COG: CAC0830 COG0745 # Protein_GI_number: 15894117 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 227 2 229 229 215 52.0 5e-56 MKIIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPGITG IDVIKELRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQ KKVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEIF ERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVEA >gi|313656766|gb|GL545251.1| GENE 1634 1512897 - 1513565 501 222 aa, chain + ## HITS:1 COG:CAC0565 KEGG:ns NR:ns ## COG: CAC0565 COG0642 # Protein_GI_number: 15893855 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 109 218 233 343 499 94 42.0 2e-19 MKKKRVKLTGREKSELFAEAVVTIILLLLLNLSIIILINLAILTNQSLENGIYFLKSTLI LGNGLHIWSWQRIFVFFMGCGDMLVLYWRLLRRYHQMQLRHVIQELHYIAEGHFDHRISF VVKTDLQKVIDSINFLVDSTVNAMNEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLK ADNSLTADQLKYVDIAYNKAGQMKALANDLFDYTTLNSTKQK >gi|313656766|gb|GL545251.1| GENE 1635 1513592 - 1514059 459 155 aa, chain + ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 1 143 240 379 380 120 44.0 9e-28 MLEQVAAGFELEAEEKNISLNVNTNPDDLVIDADAEKLVRVFNNLISNALKYGHGASFIN LSAKKIKANLVEIRVENNGEAIPKAALQKIFERFYRVETSRNTKTGGTGLGLAIVKEVID LHHGKITCESNERITSFIIHLPFKVALPESKTTVL >gi|313656766|gb|GL545251.1| GENE 1636 1514094 - 1515644 1573 516 aa, chain + ## HITS:1 COG:L53929 KEGG:ns NR:ns ## COG: L53929 COG0769 # Protein_GI_number: 15673788 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 32 511 37 483 483 338 42.0 1e-92 MSISLNTCILILKEHHLLKSSAVQDSVPTKMDYISYDSRDIQTNTLFFCKGAGFRPTYLS MAKDNGATCYVAEQPFPEGKGMHALVVRDVTKAMALLSAAFYRFPQDDLFLVAFTGTKGK TTSAYFLKGIFDKMNGGKTALFSSVNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNG MTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLLVNSRK CIINAETDHFSEVYAAATTTTNPDSIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQ LFCASDKAKHLAIEGEYTLDMIGDFNEINGTAAIIGAGLGGANHDHAAEGIRHVTIPGRM ETEKTKNHGLVVVDYAHNKASMMALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSL SVFADKAFLTTDDPGFEDPMDIAEEINAGIDHAKVDVTIELDREKAIREAISMAGKNDVV LICGKGADPFQKVRGINTPYPSDIVVARNVIKELEK >gi|313656766|gb|GL545251.1| GENE 1637 1515665 - 1516417 787 250 aa, chain + ## HITS:1 COG:L92665 KEGG:ns NR:ns ## COG: L92665 COG1794 # Protein_GI_number: 15674208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Lactococcus lactis # 1 229 1 230 240 197 45.0 2e-50 MKHFFTILGGMGTIATESYVRLINHRVKINKDQDYLNYILVNDAEIPDRTAYIKDHTKEN FFFALKDDVEKQSLLKPDFFVMPCNTAHYFYHDLAALTEVPFLNMMDIAIHTFLEKFPNE KKIGLIATEGSIYDRLYEKSIEKVGREVEFGGSEIQPMVTDLIYHNIKEKGVVNKELYHR ILQKMHDEYGCNVILLGCTELSLAQEKAPDHPYNVIDPQSILADVTIELALKIRNGMEVD KAVSKYLYQD >gi|313656766|gb|GL545251.1| GENE 1638 1516557 - 1516802 215 81 aa, chain + ## HITS:1 COG:BS_fruR KEGG:ns NR:ns ## COG: BS_fruR COG1349 # Protein_GI_number: 16078502 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 1 56 1 56 251 65 51.0 3e-11 MLTQERQSIIKNYVDQHDFCRVADLCKLTQSSESTIRRDLSEMDQLGILRRVHGGAQAVN RSIRDIAQHIRFTINVEQKRK >gi|313656766|gb|GL545251.1| GENE 1639 1516877 - 1517290 284 137 aa, chain + ## HITS:1 COG:SP0875 KEGG:ns NR:ns ## COG: SP0875 COG1349 # Protein_GI_number: 15900758 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Streptococcus pneumoniae TIGR4 # 10 124 115 228 246 90 45.0 8e-19 MVPFLKEIADLTVVTNSLDTAVELLKEDIPTRVLGGKLKKQTHAIVGEVAIKQLSELNFT AAFIGANGLSKTGNFTTPDPAEAAIKRQELLQAKQVFVLMDSAKLFDEHFAKFAHVSEVT LITNPLSFDQKISYQMI >gi|313656766|gb|GL545251.1| GENE 1640 1517311 - 1518225 1255 304 aa, chain + ## HITS:1 COG:lin2430 KEGG:ns NR:ns ## COG: lin2430 COG1105 # Protein_GI_number: 16801492 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Listeria innocua # 1 303 1 303 307 292 51.0 6e-79 MIYTVTVNPALDYVLQLEKVNTGEVNRTNDCQFLAGGKGINVSQILNQLKIDNTAWGFVG GFTGTELVRQLNKKQIVSDFVKISDTTRVNVKIHAEVESEINAAGPQITEQEIAAFKSRL TDLNEGDIVVMSGSLTPSLGADFYKDLLPTIKEAGAEFVVDTTGQALLDTLEYKPLVIKP NHHELADLFGVTFNSNEDMLTYAKKLLDMGAQNVMISMAKDGGYLVTQDGVYHAAGAKGV AVNSVGAGDSMIAGFVGTYFETKDPVEAFRIGMACGAATAFTKDIAVKSQIDAVLPQIKV EEVK >gi|313656766|gb|GL545251.1| GENE 1641 1518250 - 1520208 2423 652 aa, chain + ## HITS:1 COG:FN1441_3 KEGG:ns NR:ns ## COG: FN1441_3 COG1299 # Protein_GI_number: 19704773 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Fusobacterium nucleatum # 302 644 1 321 328 277 48.0 5e-74 MRIKDILSPESMIMDLKATDKEAAINEMADLEVATGIVNNKEEFVKSIWARENESTTGIG EGIAMPHARNKSINKARVLFAKSEKGIDFNSLDGQPVHLFFMITAPDGADNTHLQALAKL SGLLVNPDLIAKLKAATKPEEIIDIFTKAEEAKDAEEKAAAEKAAAKKEAAKEASDKPLI VGVTACINGIAHTYMAEQALIKAGEKLGAEVRIETNGSEGVKHELTADEIKRAKGVIIAS DKKVKMARFDGKELIAGPVVDGINKPEELVKDILAGKGSVYHDSGNGEEASEAKASGWHA VYQQLMNGISHMLPFVIGGGILMAISFLVEQYMGGSKTEAFVFLNNAGNMAFAFMVPVLA AYIAEAIGDAPALMPGFVGGFMATVYKGSFGGAYVASVNHSANSAAGFLGGIAAGFIAGY IVVGLKKLFKGLPKSVEGMKPMLLYPIFGLLFVALIMYFIINPIFGALNGAITAFLNHLG TGNLVLLTAILAGMMSIDMGGPFNKAAYVFASGAFANDPNSKTAAILMAAVMVGGMVAPF ATAIASAFFKNKFTDEERKAGITNWILGFSFITEGAIPFAAADPSRVIPSSVIGSAVAGA LVGFLHVGVPAPHGGFWVFPLATNIPGYFLAVIIGSIVAAIILGFWKKPVNK >gi|313656766|gb|GL545251.1| GENE 1642 1520296 - 1521084 888 262 aa, chain + ## HITS:1 COG:STM0867 KEGG:ns NR:ns ## COG: STM0867 COG0561 # Protein_GI_number: 16764229 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 2 261 3 264 271 134 35.0 1e-31 MIKLIATDMDGTWLNSDKKYDVDLFEKDIALMKKNNINFVIASGNQYDNLKTRFPDNIDD LYFVAENGALVAKGNQILAIEDLTIEEINEIRRACNEYRYPVVWAGLNSAYVLKSDGTEL YQEMKKYYHKLTAVDSFEEITDRLFKMSFVILDKNVLDLVPEMKEKYPNLGFVAGSEYTI DVSKVNMNKAVGLKLLGEKLGIAPKEMVAFGDSGNDVAMLEYVGKSFATSTAQVVAKEAA DELIGSSDDSSVQRKIIALLSK >gi|313656766|gb|GL545251.1| GENE 1643 1521150 - 1521806 221 218 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 218 1 229 305 89 27 4e-16 MGEVLTVENLTMQFDDQTVFKKLNFTLKKGSMTALLGPNGAGKTTLIRILMNMLTATNGT FKFSQNTKIGYVPQFRNIDIDYPLSIRAFIELNTPLFKSASIKKRVDNILRETNLLEIQN TRMGEASGGQKQRAYLAQALLDEPNFIILDEATASLDPVAKEELMTLIKHLNEKHGLTVL FTTHDIPLAKKYMKDYLLFKDKKLEHNKISQLTKEAYE >gi|313656766|gb|GL545251.1| GENE 1644 1521806 - 1522597 810 263 aa, chain + ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 254 4 259 269 93 32.0 3e-19 MFAYEFMRYAFWASTFIAITCGVVGVYVVARSFSFLAHTLSEIGFAGAAFAVFMGINPLW GMLLFTLLGSLGVGELSIHSNQKESSISAISALFIGLGVLFLSLAGSNSRYATNILFGSI IGVDLEGVIQLTVLSLLVLIIIALIQRQLNFDSFDHIGALAHNVNVSLVGIIFLIVMAMA VSVGSQVVGSLLVFILLTLPASTARYLGRTIPAMIAWSVGLALIGVWAGLYLGFITNWPV TFFISVIEVIVYLIVYLSKIVKK >gi|313656766|gb|GL545251.1| GENE 1645 1522708 - 1523814 1034 368 aa, chain + ## HITS:1 COG:BB0604 KEGG:ns NR:ns ## COG: BB0604 COG1620 # Protein_GI_number: 15594949 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Borrelia burgdorferi # 9 365 6 363 500 228 41.0 1e-59 MNVSMWIKFIFALIPIIWLITSLGVLKMAATKATMIGLIITIILALFSFNMPLINVFSAT LEGALMALFPIIYVIVAALFTYNVTNKSGSLKVIQDLLSSISTDKRILVLIIAWGFGGFL EAIAGFGTAVAIPAGILIAFGIDPIRASVICLIANTTPTAFGAIGLPVITLANITQINGS ELSTYVTFELFPLIVVIPFILVILVENSLKAIKGVAGICLASGFAFALPQIIVAKFVGPE LPAIVGAIFSIVVTIFLAKLRKQNEKQTEGKKEKSQSFAQVLKAMSPFILVFVFVLLASP LVPSINQLLNQFIIKFSIGKGSFKFAYLASPGTLIIIATIIGGLIEKIKLQELSKIFIVT IKGLGKPH >gi|313656766|gb|GL545251.1| GENE 1646 1523862 - 1524242 306 126 aa, chain + ## HITS:1 COG:BB0604 KEGG:ns NR:ns ## COG: BB0604 COG1620 # Protein_GI_number: 15594949 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Borrelia burgdorferi # 1 115 384 498 500 98 48.0 2e-21 MTNALAVSLVALMGPVYPLVAPLIGAIGTFITGSDTSANVLFGNLQLSAAQSLGANVDWV VASNMVGATAGKMISPQSIAVATASTGLEGHEGELLKQALKWFSLYLIVICLYLFGLGII LGMLKY >gi|313656766|gb|GL545251.1| GENE 1647 1524339 - 1525862 973 507 aa, chain + ## HITS:1 COG:BB0604 KEGG:ns NR:ns ## COG: BB0604 COG1620 # Protein_GI_number: 15594949 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Borrelia burgdorferi # 11 498 10 500 500 289 39.0 1e-77 MNSLIQLFLDLLPIIWLIISLGVLKMAAVKATSIGLALTILLSILGGKLTSTQTFLGALD GAIMGLIVISYVVVAALFAYNSASYSGNMRVIQNALSQVSTDPRILVLLVCWGFGAFLES VAGLGIAVAIPAGILISFNIKPVKASVISLLANTATTSFGAVGLPVITLADVTKLNSQTL AIFVSLQLLILCILVPFLLVLLVDSSFKELKKIWYYPLTAGLVYGLVQLVVSYYLGAELP TIMASLVTLIALIILARVKSKSAVDQEKHTFTEIVVAAAPFILIFLLVLITSSLFPQINN FLNNFKINFQIYPGQGNSQDFAYLASPGTIILLSAIIGGLIQKVSLQEQLKLLILTLKSV WKTIITVCAIVALAKVMDYSGMTTTLATSLVKGLGPIYPLFAPVIGAIGSFATGSNTSSN VLFGDLQLSAAKNLGVNKYWLVASNMAGSTAGNMLSPQSIAVATTGVKLEGKEGIILKDA LKWAGLYLGIICVFLYLVGIIIGMIKL >gi|313656766|gb|GL545251.1| GENE 1648 1526076 - 1526276 83 66 aa, chain - ## HITS:1 COG:L166370 KEGG:ns NR:ns ## COG: L166370 COG1164 # Protein_GI_number: 15673709 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Lactococcus lactis # 1 64 482 546 601 82 56.0 2e-16 MNTFYGELNQKYYGIVEPGSDIDKEWARIPHFYYNFYVYQYSTGFAAAVALAKNIVHGTD KQKQTI >gi|313656766|gb|GL545251.1| GENE 1649 1526480 - 1527721 1267 413 aa, chain - ## HITS:1 COG:BS_yjbG KEGG:ns NR:ns ## COG: BS_yjbG COG1164 # Protein_GI_number: 16078219 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Bacillus subtilis # 3 401 10 408 609 336 44.0 5e-92 MVLPTRNEVPKELTWDLTRVFPNDQAWQKEFKSVSNEIDKLSSLSTIITKSGSDLYSALT QIFSIDRRLEKVYVYATMSRDVDTSNNHYLGFAAMAEDLANKYSSVISFVNPAILSLSDQ NLKKFELQEPKLAHYKHYLDQITNKRQHTLDAQAEQIIAASGAALNSSSNTYNVLTNSDM EFGYTTDNDGEMVQLSEGLYSQLIQSPQRSVRQNAFETLYASYGQFQNTLASTLSGNVKA QNYAALMHGYANAKEASLSQNNIPVSVYDNLVNGVHKHLDLLHRYMKLRKKVLGLQNLEM YDLYVPITGTPSLRYSYKEAKDQAREALSILGKEYLDQVDYIFNNRVIDVVESKSKVTGA YSGGSYDTDPYELLNWTNDFDALYTLVHETGHSVHSAFTRKINLMFMVNILSS >gi|313656766|gb|GL545251.1| GENE 1650 1527890 - 1529098 1085 402 aa, chain + ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 45 344 10 319 338 191 36.0 2e-48 MTQNHLGRREEYHFKQQSGRLLSRNQFFAANKQNFSNNRQSKKTLTLFIFLIIGFIATWG SHFYFNLEAALGNTYQGGTPATQITNKQPISVLILGVDQGIENRHDQGNSDTMILATANP KTQKSTLTSIPRDLLADIRGDNGKYFMFRVNSAYQVGGNKAAMKTTKVLLNTPINYYMEV NMKALQELVDAVGGVDVKVPFSFTYNTTFKKGKMHLNGKQALDYARMRKEDPRGDYGRQM RQRQIIMAIVKNALSLNSISNYKKILKAFSKNVTTNMTFSDMMAIAINYRSVANNIKSDY IHGHDAWIDGASIQVASTSELQRVSDYIRTNLGLNKQKISNEETRQNRLNKKYNAIDWTN PNAFTNYQVFPANSDSAINSSSSSYNTTYNNNVSEYDNGGNW >gi|313656766|gb|GL545251.1| GENE 1651 1529149 - 1530216 1404 355 aa, chain - ## HITS:1 COG:Cgl0921 KEGG:ns NR:ns ## COG: Cgl0921 COG2132 # Protein_GI_number: 19552171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Corynebacterium glutamicum # 3 300 176 489 513 148 33.0 2e-35 MGVVITDDHEAELPIPKAYGKDEFPIVLQDRVFHEDNQFDYRADYDPMGVFGDTPLINGV IKPYIDVTTQKVRLLFLGGTNRREWRLHFDNDLVMTQIAGDDSFLAHPVKMTKLLVGPGE RLQVIVDFSDYKEGDIVNLYTDDFKLIEFRIHHFEKDDSVLPDTLFTPEDPVVADDAVVR KVTMDDHDKINGKQYSMQRIDMKAEVNHAEYWDVTNTNSKSHGMLHPFHIHGAHFLVVSR NGQTPNPNEIGVYKDTIEVAPQETVRLKVIFPKEGIFMYHCHIIEHEDAGMMANILIVDP TKPEPHYDLMDMETLTKAFAEEKGIPESEVFMPGMCTEGYMNHCHDDANSGASHH >gi|313656766|gb|GL545251.1| GENE 1652 1530276 - 1530713 306 145 aa, chain - ## HITS:1 COG:Cgl0921 KEGG:ns NR:ns ## COG: Cgl0921 COG2132 # Protein_GI_number: 19552171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Corynebacterium glutamicum # 31 132 40 139 513 90 45.0 7e-19 MTEKVYTDYFYDEADFDKNHFRYKNLHIPDGIEAQPLAVPPVLKPDKEEGNDVWFTIESM EGETPFLPGSKTKTWGYNAPFLGQTMVLKTGQHVHVTLKNSLKELTTYHWHGMEVPGPYI DGSCHAPVYPGEEKKLNLRLNNLLH >gi|313656766|gb|GL545251.1| GENE 1653 1530951 - 1531448 439 165 aa, chain + ## HITS:1 COG:no KEGG:LBA1751 NR:ns ## KEGG: LBA1751 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 151 1 155 177 130 49.0 2e-29 MKILLKDLLEKIENEDYIQDLETEKYSALTKAKVRAISKNLVKQVLAAMKNDSLAHVQLD ITGQRPASFILETNVVNLPYANYKKISNFVSAEEQLPVKIYFEVSSEYINASKFWIEELA DTDDVNEEEIANRFAELINQKLVDIRNYIKPEKSGSTKNKAKKKS >gi|313656766|gb|GL545251.1| GENE 1654 1531523 - 1532161 587 212 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1632 NR:ns ## KEGG: FI9785_1632 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 4 207 5 208 208 206 52.0 4e-52 MFNWNWLGILVWLVLLIYLIFISYHIRKRHLKMIVIQQKHFTWRTFSLDLLEVLILLIGL FVQIQNSFFDNPSLTSKSQIEQSIKYKPLVLSSSAERSYYVTSNSVQKKKLYQRYSFFTE GKRYNVTSDWATISDGTVALNAVAQKLPYSKQVLAKYDVKYQKAYVAIYEAKYKNTWQNG LGLHVGRNALKYYLIRVPDATFVREVKNEKRS >gi|313656766|gb|GL545251.1| GENE 1655 1532166 - 1532876 388 236 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01774 NR:ns ## KEGG: LCRIS_01774 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 11 234 282 501 502 210 50.0 4e-53 MTIITLFSSLIFPHAPSIQRANYDSTSTPLHITSKTKKKSKQLNEVLSDGLKQNRGEKRR NFLIKFIKHNAAAYALNQRFIEKSYSYKYDPDFWLKIMKMPIQQRMNYRIIERKMLDQVV KNNNNRLDNWLGISYIRENNIFILERDFLAQKYSLGWIGMLLFTGIYLLIILYSASKWLL NKAYRKLQNTALLMSTSLLTISAFYAGNVLDFLTATFIFAFILGYLLSKMRQEKRS >gi|313656766|gb|GL545251.1| GENE 1656 1532942 - 1533724 464 260 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01774 NR:ns ## KEGG: LCRIS_01774 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 7 253 1 241 502 246 55.0 6e-64 MVRRIPVNNKIKVSLYWIILIQPFLDIYWLYYPPLSEILPFALPTIIRILGVIVILGMFF SQKHNWQRLGKQLWIVAYIIILIFYSVLHIWHVKDFNSVDPTNYGYSTLGEIFYLIRMVL PLITIYITCYAELTEEIFYSVIKWIIGLFSGTIVITNLFTISLMSYESVLDPGLHFIKGN IFTWFTNNPLNYYFLASKGLFYKANTLSAIMLMLLPLMLYIVVKEPNWKNSGLYLTQSLA MLELGTKVATIGLFITTAVF >gi|313656766|gb|GL545251.1| GENE 1657 1533796 - 1534086 286 96 aa, chain - ## HITS:1 COG:no KEGG:LJ0595 NR:ns ## KEGG: LJ0595 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 96 1 95 97 93 68.0 3e-18 MKKNDVKIGAIVEARSQEELKHPFQGKVEKIYENSALLSITSFDPKDAASVSDLNNKMVI NFKYLKAVKSPKKSANTTSNNDVKISKIDDDASNKK >gi|313656766|gb|GL545251.1| GENE 1658 1534145 - 1534729 452 194 aa, chain + ## HITS:1 COG:jhp0304 KEGG:ns NR:ns ## COG: jhp0304 COG0194 # Protein_GI_number: 15611373 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Helicobacter pylori J99 # 13 191 7 185 206 68 31.0 1e-11 MNFKRGELFLKKLIIIAGPSGAGKTTISNYLEEKYQIPRVLTHTTRAIRSGESKDAYYFE NEESFAKLHLFESVKYGSYQYGSSREGLEKAWKTNDIVSLIVDTAGVKSYVEKLQANQFY FIYLKVSHLETLEERLVERGDEPTEILKRINSREFKRDLQLSDSLKKYAHVLVNDNLEET QRKIDKIITKLRKN >gi|313656766|gb|GL545251.1| GENE 1659 1534898 - 1536058 1381 386 aa, chain + ## HITS:1 COG:CAC0308_2 KEGG:ns NR:ns ## COG: CAC0308_2 COG0791 # Protein_GI_number: 15893600 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 266 385 51 166 167 111 55.0 3e-24 MNFKRNLAKISAATAFALAGVATANAINSQSTVQAATTPSTVQINYVAGYGINVWTSYNN PTFTGKRLAHGTTVNVLASATDSKGKTWYKVGTDEWIPAEYTIEANTKSMNATMRINYVA GYGINVWTSYNNPTFTGKRLAHGTTVNVLASATDSKGKTWYKVGTDEWIPAEYAVDANTK QMNATMYVNYVAGYGINVWTSYNNPTFTGKRLTHGSSVTVVASATDSNGKTWYSVGANEW VPAQYLIASNPSSNTSSNTSSNTTQSATSSAAKVVSLASAQLGKAYVWGANGPSAFDCSG LVNYVYSQVGLSLGRTTYVQVNNGTTVSMNNLQPGDLLFWGSASAPYHVGIYVGNGQYIH AATPSQGVIKQSISQYFYPSVAKRVL >gi|313656766|gb|GL545251.1| GENE 1660 1536169 - 1537440 553 423 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 27 415 31 422 425 217 34 1e-54 MIDNQPQKTKVVVAGVNLNDPNFDYYMTELVNLSEANNMLVVGQVRQNLEQVYGGTYFGL GKLNEIKNLAHGLQASAVVLNDELTPMQIRNIEKITKLQVIDRTELILEIFANRAKTRQA KLQVQLARLQYELPRLHPSENTLDQQRGGGSVNRGSGESKLELNRRTIDKQITAIKKELQ NVATQESIKSKRRNNSKLPQVALVGYTNAGKSTTMNGLLKAFNNDASKEVFVKNMLFATL DTSVRRINFDGTNDFIISDTVGFISKLPHNLIESFKATLKEASDADLIVNIVDSSDSNML QMIKTTQKVLHEIGITNIPVVTAYNKADLTNKKFPEIEGNDILYSAKDSKSIKALAKFIT KRIFSNYKTLNIELPLNAGSLLSYLHENGDVQKEKYTDTGILVKVKLAPKDYSKFSIYKQ KSE >gi|313656766|gb|GL545251.1| GENE 1661 1537619 - 1538368 284 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 222 1 219 223 114 29 2e-23 MTNLVNVKEVTKIYGKKGQKQFTALKGISFEAKKGDFIVIMGASGSGKTTLLNILSTLDK PTSGRVEINGKDISNLNKNAMADFRGKEIGFIFQDFNLLENLSVRENIALPLSLQNYPAK KIDPLVEKVAKRLEIADLLDKYPTQLSGGQKQRVAASRALVHEPAILLADEPTGALDSKS ARELLTTMEELNKQGVTTLMVTHDPFSASFGKRIIFIKDGKVDSELIKGEKSRRVFYEEL LAKLGTLEN >gi|313656766|gb|GL545251.1| GENE 1662 1538386 - 1539588 925 400 aa, chain + ## HITS:1 COG:CAC0227 KEGG:ns NR:ns ## COG: CAC0227 COG0577 # Protein_GI_number: 15893519 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 2 300 3 300 634 101 24.0 2e-21 MLWKLSFNGIKSRFKDYLVLFLGLVISSTVFYLFLSLIMNPVFLKSNMPVTLSMTQFIFG FGAVLLGIITLAYVNFANRFLLSMRKKDYGTYLMLGAKSRKIGNLIFTETLITGAISTLA GIVLGIFASQGVTVLLMKMVKIKLKSFSPVVPTAILLTFAFYLLVFFFAALFNRIKLVRT PVIKLLREEQSPVNVSHKKFLRVIFGLLGIGLLATGYIILFKQSLDVKLIVTSLFTISFG SYFLFKASLGLLIDLLRRYHKLEYKNLRAFTLGQLKFRLEEYTQILSVISIFFALALGAI TVGLRFESYKSTYSATVYYDAAILKKTPKTEALLKQISGKREFNYNYKIGKHYVYFEKAE FEKQPFINKVYDTKKISSQSEAVTNLKTVKLTAKNPMLSK >gi|313656766|gb|GL545251.1| GENE 1663 1539585 - 1540181 598 198 aa, chain + ## HITS:1 COG:lin2220 KEGG:ns NR:ns ## COG: lin2220 COG0577 # Protein_GI_number: 16801285 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 70 197 517 645 646 64 31.0 1e-10 MNYLLQSLIGINKEIKFVSASNYQKVAGTVKQLTLIKTKNMVANYEKLLEVIKIQNPYPD ELPPLTPMAYQMVTGLVSGFEFMGFFLGFAFLAMLASTLMFKVLTGAEKDRIRYQMIGKI GFRTKQIKRAIRHEVGALFFLPAILGICHVLVGLQLFKKIVISPYQDFWIPLLIFLVLYS IYYLVTVKLYQGIVLKKL >gi|313656766|gb|GL545251.1| GENE 1664 1540237 - 1540683 703 148 aa, chain + ## HITS:1 COG:PAB1489 KEGG:ns NR:ns ## COG: PAB1489 COG0105 # Protein_GI_number: 14521543 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Pyrococcus abyssi # 5 145 10 152 162 133 48.0 1e-31 MIRDEYSLVLVKPDGVKAGHIGDIITRIENRGYKIEALKVINATEKQLNEHYVDSVGKPY FPHLLNYMTSGSMIGMIVSGTHVIDVLHKMAGATNPSNAEMGTIRGDFGREWPDDNIRNV IHTSDSQESAEREAKVWFPDFDFSKIGN >gi|313656766|gb|GL545251.1| GENE 1665 1540731 - 1541381 599 216 aa, chain - ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 4 177 7 182 224 124 40.0 1e-28 MKKVYIIRHGRTHINHYNKMQGWCDTPLTNEGIEGAKKVAQVLKNIPFDLALSSDTKRAS DTCEIIMKENINHNQLQHLTSKFFREQFYGYFEGMDSDMAWRMIAGPVGLRNLQDLLDNY SIDEIKDLMKKSDPYHDAENAQEYWARLEQGLNLIRQLDGYENILLVTHGFTIRSLVAKY GNGKFDIKTGPRNSSITMMELTDSDTKITSYNQLTL >gi|313656766|gb|GL545251.1| GENE 1666 1541399 - 1542073 662 224 aa, chain - ## HITS:1 COG:SP0617 KEGG:ns NR:ns ## COG: SP0617 COG5549 # Protein_GI_number: 15900525 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted Zn-dependent protease # Organism: Streptococcus pneumoniae TIGR4 # 6 211 28 237 240 133 36.0 2e-31 MKIINKLLKLGIWIGIIAFAIHLYQSDSSIQTAAKDSVAFLQTKVSQLVSPNSKSSASDD HDSTGNYTWTSNSATVYIELDNQVLYNATMNAINSWNNTGAFTFKIVNSKKNANIIIKAM NDDSTNAAGLTSTSYNPISHHLLKAVVKLNEYYLLNQWFGYDNQRITNTVEHELGHAIGL SHTKEVSVMYPEGSYYTIQPKDISNVKQLYEENNQSSSSSNNAA >gi|313656766|gb|GL545251.1| GENE 1667 1542472 - 1543431 647 319 aa, chain + ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 1 295 74 378 774 249 45.0 4e-66 MLAERQNAWQHSSKQLSTLKRLEKKPYFARVDFEEVGEKPETIYIGLGSFADRDDHFLIY DWRAPISSIYYDGKLGKVTYHAPNGEQEVNMTKKRQFMIEDGQIENMFDTNESIGDQMLL EVLGEKSSTQMKSIVTTIQKEQNKIIRNTNADLLFVQGAAGSGKTSAILQRIAYLLYRYR GNLTSSNVIMFSPNQLFNDYIENVLPEMGEQNMVQMTYWQFVSRRLPGIGVENLFEQFEN SEKNNKIKDFKDSLYFFKLVTRYAQLLKEKVWYLKIFISEIKISHFLVKKRLKKYTIHFH IIINYLIELMRLEKVWSIV >gi|313656766|gb|GL545251.1| GENE 1668 1543284 - 1544546 1052 420 aa, chain + ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 1 410 357 762 774 223 33.0 8e-58 MVFKDLYFRDKDKPFFSKEKIKEIYYSFPHNYKLSNRIDATRESLVNSLNHMIASESKKA WVADTIENLSQEQLNQLYDRPDQEFESSEKEERFLARKIVIKELQKVNKKINHNQFLNIR RQYINFLRLVGRSVDFTKYGFTDEEWDNHISKVIASFKNKKIKMTDVSAYLYLYDLITGR RTNYEMRYAFVDEIQDYTPFQIAYLRFNFPRAKFTMLGDLNQAIFTKESSHDLLTQISTL FDPEKTEVVQLTKSYRSTMQITEFTKEILVQGEKIESFNRQGPKPAFYKRAEFESEIDSL ISVIKENDAQKLTTAIITKDLESSKAVFAALKEKQIKTTLIASANQRLVPGTIVVPSYLA KGLEFDAVVMWDASDNIYHEFDESQLVYTIASRAMYKLDIIYCGKLSPLLQVKKDLYIDK >gi|313656766|gb|GL545251.1| GENE 1669 1544709 - 1545251 445 180 aa, chain + ## HITS:1 COG:SPy0873 KEGG:ns NR:ns ## COG: SPy0873 COG2357 # Protein_GI_number: 15674898 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 2 177 36 211 216 214 63.0 5e-56 MNEEYQKKHGQKLYEHFEGRVKSEKSMIEKCQRKGLPLIPESALIENRDSIGIRIVTNFV DDIYTVIRLLESKKDLHIVKKKDYIKNAKPNGYRSYHLIIDKKVNFEDIKGQKPGHYFIE IQLRTIAMDTWASLEHEMKYKHNIKNPEQISKELKRVADELASCDLSMQTIRQLIKEDES >gi|313656766|gb|GL545251.1| GENE 1670 1545248 - 1545649 350 133 aa, chain + ## HITS:1 COG:SPy0874 KEGG:ns NR:ns ## COG: SPy0874 COG0745 # Protein_GI_number: 15674899 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 125 1 125 222 167 67.0 3e-42 MRILLAEDEKQLNHVLTVAMTSQGYDVDSTFNGQEAVEMAQQKAYDVMIFDIMMPVKDGL TAVKEIRASGDKTYIVMLTAKSEIDDKVKGLDDGADDYLTKPFSLKELLARLRSKERRED NYNTKKCSWLIYF >gi|313656766|gb|GL545251.1| GENE 1671 1545625 - 1545918 132 97 aa, chain + ## HITS:1 COG:SPy0874 KEGG:ns NR:ns ## COG: SPy0874 COG0745 # Protein_GI_number: 15674899 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 92 127 219 222 94 47.0 4e-20 MQLANLFLDVENQEISSRNSVRLSTKETELLQYLLLNKDKFLSTQTIFSHVWKDSEENEN IVWIYVSYLREKLKAIGSDVEISGEKDGSYVLQIQKG >gi|313656766|gb|GL545251.1| GENE 1672 1545925 - 1546428 359 167 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0803 NR:ns ## KEGG: LBUL_0803 # Name: not_defined # Def: signal transduction histidine kinase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 166 1 166 419 94 33.0 1e-18 MIKRFRRKFIAVAVLSLSIILFASFGGIVLATQFRTDREITSVLRLLAQNKGQLNQKAAR KTLGPDSNKDSLFKYRYFALSLSNKGKLKLVDNTHISTISASDISSNSASIKKAIKNTTS EGSIMINSNPYRFILVKSKGSNQTIAIFLDTTPITASYKHLFRVAIF >gi|313656766|gb|GL545251.1| GENE 1673 1546467 - 1547174 508 235 aa, chain + ## HITS:1 COG:SPy0875 KEGG:ns NR:ns ## COG: SPy0875 COG0642 # Protein_GI_number: 15674900 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 231 179 410 410 256 54.0 4e-68 MLSNQAIKPIVEAYEKQRRFITNAGHELKTPLAIISANTEMEEMIGKSDEWTESTKEQVE RLTMLINQLISLARMSEKDELVLERVDFSDSVKRAANSFKSLIQKDGKNYNIEIEPGLFV NGEKQSLYELVNILIDNANKYCDETGQVSVNLNKGSLGRNAVLQVKNSFKDGKSINYNKF FERFYRSDESHNSQKGGFGIGLSMAQDLVRVFGGKINASYDGKNVILTVILKLRK >gi|313656766|gb|GL545251.1| GENE 1674 1547246 - 1548160 680 304 aa, chain + ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 3 302 6 304 306 274 47.0 2e-73 MKSFTHFSRRKWANLNPNLNIQVSHEELEKINSHGDVLSIADVRQVYEPLVAYIGIMFEQ SKKAEKSKADFLKQAMTKRPFIIGISGSVSVGKSTTSRLLRLLLQRTYPDLKIQRMTTDG FLYTNNELKVKNLMSRKGFPESYNMQRLNDFLTDVVRGKEDIVYPLYSQGISDIVPDKFG HVLSPDILIIEGINTLQLPPNGTIVSSDFYDLSIYLDADEDLIESWFLSRFNELMEQNKN NPDNYYYHWAHSNRKEAINAAKEVWQSVNLVNLREFIAPTKTRANVVLHKTRGHHIDSVY LRCY >gi|313656766|gb|GL545251.1| GENE 1675 1548311 - 1548841 734 176 aa, chain + ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 176 11 185 185 184 55.0 5e-47 MIFSQDGKLMRVLKSNHHKPGKGNTVMQMDLRDVRAGSMIHKTMRPSEKVELVEVAKKGA QYLYSEGDNYIFMDTTTYEQYEITKDQLDDDALYLMPNIEVQLEFTDDGELIGIELPATV TMKVAETQPEIKGATAAGGGKPATMETGLVVTVPDFINEGDELVINTQEGTYKSRA >gi|313656766|gb|GL545251.1| GENE 1676 1548900 - 1549811 1066 303 aa, chain - ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 12 299 16 296 296 150 33.0 2e-36 MKQGTKILTLDNGYHLWTNTQGSGDIHLLALHGGPGGNHEYWEDTAEQLKKQGLNVQVHM YDQLGSLYSDQPDYSDPEIAKKYLTYEYFLDEVEEVRQKLGIDNFYLIGQSWGGLLVQEY AVKYGNHLKGAIISSMVDEIDEYVAAVNRRREEVLTKEEIDFMHKCEAEGNFDNQRYQDD VQILNINFVDRKQPSKLYHLKDLGGTAVYNAFQGDNEFVITGKLKDWHFRDQLKNIKVPT LLTFGEHETMPLDTARTMQKLIPNSRLVTTPNGGHHHMVDNPDVYYRHLAQFIQEVETNT FNK >gi|313656766|gb|GL545251.1| GENE 1677 1549962 - 1551542 1658 526 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 3 520 4 522 535 164 25.0 4e-40 MSLKYAQKRKVFLFIFFATIKACNILFIAYMLKLMLNVASSGKKDMMQLVGLAGITAVGQ IFFMCSNFLYEANKMEIIRQVNLYLKRKNIAYLVDQGESNIKQDLSLMTNDLKQIETNRV TAQLDMIFQSITFVGALSLAFYNSWEMTLIFIVASLAPAIVQIFTSKIITQKAKVWTKTN ADYTQSISDSLNGASAANLYNARDNILQRASKSALRMENALKSMNLTQAWALELIYSAAE LFCFIIPCTIGGILMMEGKLAVGTLVMLVDLAMNFITPVVTIFQEFNQVKSTVPMWEKTK KATIYNLDDEVEERESFTGLEVKNLSYQTASDKKTIFANVNLKVKPGEKVLLMAPSGWGK TTLLRLMLGQKNPQAGEILINQKDVSGNWEAAHNYYSYVNQKPFLFDDTLRFNITLGRTC TEEELLAAIKEAGLNDLVENKGLDFYVGENGNKLSGGQIQRVEIARALLSRRPIILADEA TSALDPGMSRAIHETLLKNPKVAVIEVAHKISDYEKEMFDQIVKFK >gi|313656766|gb|GL545251.1| GENE 1678 1551749 - 1552534 960 261 aa, chain + ## HITS:1 COG:SP1472_2 KEGG:ns NR:ns ## COG: SP1472_2 COG2461 # Protein_GI_number: 15901322 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 18 223 4 207 227 122 38.0 5e-28 MAEPKWLKDMNPEDYLKEDFDCKGKGKYTVSGIENDDPEWLDKAAKKVNAAEGDDYVKLD CGLMTVNQLNWMLRNTFGELTFVDENNQFLWYNRPQDPNYKMKAKRVPAQVGDTMGQIHP DIRDVIPNAKKVVHALRTKEGGHDDVYMPVPTGNLKELVLHYYKRVEDEEGNYRGIYEWV QDLYPFVKYFCETTGQKLVVDPDATTGATYRRNSDPDAKTGASTKAEAAKMEEKPKVEEK PKLKKNQIQQLVHLNINIDKS >gi|313656766|gb|GL545251.1| GENE 1679 1552613 - 1553848 938 411 aa, chain + ## HITS:1 COG:BH3996 KEGG:ns NR:ns ## COG: BH3996 COG3410 # Protein_GI_number: 15616558 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 238 403 18 181 188 139 45.0 1e-32 MSELTNDATQKLAVNLPLTSEQEKLVKQILAFTKKHINGDTPAIFTVYGDAGTGKSVVLA HLFNKIQLAARTEKDSPLYQTKNYFLVNHPEILKVYKEIAGKQANLYKKDFTRPTSLING LDKKQTKVDVVVIDEAHLLLSHRDAYNNFTYDNQLVEIIKRAKVIILVFDQYQVMRTKTY WSTEQLEEITHQYPHEDYHLTHQFRMNASSELINWFNTFTDESKVIPFPQNARNGYDFRV FDDAEKMRQEIVKRNQEVGLARILSTTGYPSILDGKKHYIKEGKFKMPWDQYNYTVKPWA EIPETINEVGSFYTCQGFDLNYTGIILSPPFYQVPDTNQIQIDTSKFTDTEAFKRRTDLF DDKELEQVKMRLFMNQINVLFKRGIYGTYLYAHDPLLRKTLYEYYQKLIKD >gi|313656766|gb|GL545251.1| GENE 1680 1553941 - 1555206 1335 421 aa, chain + ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 5 409 6 411 412 384 46.0 1e-106 MKIDYNYITDRFIKYCEMDTRSYPDNDAVPTSPGQVELLMELKAELSRLGLEEVSYSAKD AYLVGKIPATTKKKVSAIGFVAHVDTADYNSKNIKVKVHSNYAGNDLVLDSKHILRPKEF PSLKEVIGNTIFTASGDTLLGADDKAGIAGLLAMAKYLLQHPEIEHGDLWLAFGPDEEIG KGAKRFDVSRFPVEFAYTLDNGNVGDIAYETFNAAEAKVEITGTVVHPGEAYGLMVNAGL IANELVAALPQDFVPEKSKDYDGFYLLTSFKGNVDHAEVNLIIRSFDTLDFLARKQFIQD QVDKLNAKYGDQRLSLTMRNQYKSPGDLIKQHPYVVNLVHHAYAKLNIKPKHIPFRGGTD GDFISEKGIPTPNLFNGGANFHGPYEYASLENIAKLAEVLVEISYLHSELDDKRDNTPLR R >gi|313656766|gb|GL545251.1| GENE 1681 1555302 - 1555982 548 226 aa, chain + ## HITS:1 COG:SA0315 KEGG:ns NR:ns ## COG: SA0315 COG0846 # Protein_GI_number: 15926028 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Staphylococcus aureus N315 # 7 221 55 289 315 80 26.0 2e-15 MLDEASFKVQYPDLVEKYDVHTIGDALDKKLPSWPEQWTMWRRFIDDYSVNYQPSDAMLE LKQLLTGKDYFIATSYFTHAFENAGFDSKKIFNIFGDWTTMACSSGVNHGLKSDLAIQGV PKCEICNSEMEIHMPLTAHFYPDTDANTRMRIFITNNEDKKMVVLGLGVDELSPQLLDPI LHLVSQFENWHYISADLDSSDLPQNIVKRSIGTGSNSKSLLEGLIN >gi|313656766|gb|GL545251.1| GENE 1682 1556089 - 1556619 442 176 aa, chain + ## HITS:1 COG:lin1357 KEGG:ns NR:ns ## COG: lin1357 COG2176 # Protein_GI_number: 16800425 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Listeria innocua # 1 151 430 577 1444 88 30.0 5e-18 MLDIETTGLSPYRDRVTELAGIKVRNGKVVDKYSQLVKHPKNNKVPQFITKLNGIDEKLI LTQGIPVKEAITDFRNFIGEDVIVGYNVNFDLNFIYDLCEKFNLERLSNNYIDVLHFSRV FFKKESHNRLLDCIQRLGISESEAHRGLKDSLDTKAVFDIYQKQFTSEMLSEVKTI >gi|313656766|gb|GL545251.1| GENE 1683 1556616 - 1556930 206 104 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_08940 NR:ns ## KEGG: LAC30SC_08940 # Name: not_defined # Def: DNA polymerase III # Organism: L.acidophilus_30SC # Pathway: Purine metabolism [PATH:lai00230]; Pyrimidine metabolism [PATH:lai00240]; Metabolic pathways [PATH:lai01100]; DNA replication [PATH:lai03030]; Mismatch repair [PATH:lai03430]; Homologous recombination [PATH:lai03440] # 18 104 229 318 318 100 55.0 3e-20 MKNCILTEKIPFEYLIKRNPFKNKNIVFSGSINEELPVIATNMGGCVKTHVDSMTNYLVM GNQDFFSTSNPELQKARSLIAEGNKISRISESFFLDMLDSWARS >gi|313656766|gb|GL545251.1| GENE 1684 1556939 - 1557664 544 241 aa, chain + ## HITS:1 COG:no KEGG:LJ0652 NR:ns ## KEGG: LJ0652 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 61 229 53 221 282 246 82.0 5e-64 MSKRKRRTSHKRINPATSFLIVLVLAFLGIYQNSGGSLSTAVNSITYLNGSNHSTNSPKN VFKASSADTEYGGLSTNDYQRLANLNFQSGQKGYVVVNNNHSTLIKNAWKVNKVIYSNLD SLNRTSHSNTGFLEQRNVANESLRVRQFVNPTAWHSNRSNGIQIYNRGHLIAYSVSAGID QDGNYEPNNQSGDQNNPKNLFTQTAYSNQKVQTIFESKVRQTLRQGKKLFTKLHLFLKIL N >gi|313656766|gb|GL545251.1| GENE 1685 1557664 - 1557810 110 48 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1748 NR:ns ## KEGG: LDBND_1748 # Name: not_defined # Def: DNA-entry nuclease # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 47 234 280 281 70 78.0 2e-11 MARGINLQAVSTDGSLDFNVYIFNVQPGYQFNYQNGRASKDNSVQVAN >gi|313656766|gb|GL545251.1| GENE 1686 1557986 - 1559071 1087 361 aa, chain + ## HITS:1 COG:mlr7224 KEGG:ns NR:ns ## COG: mlr7224 COG3839 # Protein_GI_number: 13476018 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Mesorhizobium loti # 7 356 4 376 381 260 38.0 3e-69 MNEEKFVEVKDLRKVYDNGHEAIKNVSFSVKKGDLVCLLGPSGCGKTTILNMLAGLLNPT SGEILFDGKNVVNVEPKNREIGYVFQNYALYPHMTVLQNVMFPLTVGKTKRPKEEAEKIA KKYMALTQITDLADQKPGNLSGGQQQRVAIARALVGEPKILLMDEPLSNLDARLRLKIRE EIRALVKEVGITTLFVTHDQEEALSIGDKIILFNNGVIQQDDNGQNFYLEPRNHFVANFI GNPVIDNFAVKVENNEIKASDFSIKISDLDAQRFRKQLIDGDYTLSVRPENITPAENGEI STEIVDVELIGRERILKFNHDGQQARSLVNLEVPIKAGEQVKLKLRLDRIFIFTPEGERI Y >gi|313656766|gb|GL545251.1| GENE 1687 1559071 - 1559937 828 288 aa, chain + ## HITS:1 COG:BH3689 KEGG:ns NR:ns ## COG: BH3689 COG1175 # Protein_GI_number: 15616251 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 7 283 16 295 300 167 37.0 2e-41 MKTNQKKAWLFLAPTLIFVTVFSVWPILRAFTMSFQSGPLINMEWTGFSNYQYIFSDPEF WRAIRNTLIYSVFAVPISLAISIMLAWFIFSKVKHSSFFETTFFMPYVTSTIAIGIVFRY IFNGEYGLLNYLLKAVHLPAPNWIDDPSMSLITIIIFGIWTSLAFDIVILMGALRNIDPN YYVLADMYGASEQEKFWRITIPQLVPTLAFLLTMNIIGAFKIYTSVYALFNGQAGIGNSA TTAVFYIYNKFQMVGTPGVAMAATVVLFLIILLTTFLQRKMMKKIGRY >gi|313656766|gb|GL545251.1| GENE 1688 1559937 - 1560149 148 70 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_08915 NR:ns ## KEGG: LAC30SC_08915 # Name: not_defined # Def: sugar ABC transporter # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 70 1 74 274 83 62.0 3e-15 MKKIRIGNLIAYLVLAIFSLITVFPFVYMILGGLMSYSETTTIPPTLIPHKFNWEIMQRS LLRLHLLDTF >gi|313656766|gb|GL545251.1| GENE 1689 1560278 - 1560760 431 160 aa, chain + ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 1 159 119 277 277 140 40.0 1e-33 MVPGEAIIFTNYNTIAKMGLLNTYLGLVLPFLTSIFYMYYLQSYFGSISDTIYKAAMING ASDWEYIWKVLVPMSKGGLFTVGLLSFISGWNAFLWPLLVTNEDSMRLLNNGLSSFASDS GSETELQLAAATLTVLPILIVYFIFRKQIIRGVVRNDLKG >gi|313656766|gb|GL545251.1| GENE 1690 1560744 - 1562027 1255 427 aa, chain + ## HITS:1 COG:PH0466 KEGG:ns NR:ns ## COG: PH0466 COG0595 # Protein_GI_number: 14590378 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Pyrococcus horikoshii # 9 424 4 511 514 101 26.0 3e-21 MTLKDKTTVTFYNGLTTIGGPMIEVAYNKSHVLFDLGEVYRPELNLPDESYQTLIKYQLI GDVPNFYDPAITGKQLDHTRWEHAAAYISHLHLDHSKALNLLAPEIPLYAGPITAALLPV LNQNGDFLLPATNHEKGYTRSIIPAKYKSPITVGDITLEVWPSDHDAYGATGLIIKTPDK LIAFTGDIRLHGYHPEWVKEYLTAVKNADLFIVEGTGISWPEHIGQEFTGPKNEDELTEK IVQLEQENPKRQITFNTYPTNVERLLKIVEESPRKVVLHAKRADLLKEALNKDYHYYYLP GEKKYESLDPKLEIAYEDLVKDNHEYLWQVVTNYGDLMKNGLYIHSNAEPLGDFDPAYKP FVDALERQNIEFVALRCSGHADDKELKEIIGLVQPRILCPVHTLHPELAENPYGDRILPK RGQTITL >gi|313656766|gb|GL545251.1| GENE 1691 1562077 - 1563384 1791 435 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 47 398 19 370 419 159 30.0 1e-38 MKFAKRLAVAGMTALALVGTTACSSSKTSSTKSNTTSSVKIPKVTKKTTVVFWHAMTGVQ QATLQKLTAEFEKKNPNITIKLENQGAYTDLQAKINSTLQSPNNLPTITQAYPGWLWNAA NNKMLVDLNPYINDKNVGWGSAKASNIKTELLEGAQIKGTQYGIPFNKSVETLTYNADIL KKYNVKVPTTMAELKAASKKIYEKSGHKIVGAGFDSLSNYYTLGMKDAGVNFTNKISFTG STSKKVINYYADGVKAGYFRTAGSEHYLSGPFANEKVAMYVGTSAGEGFVKKGVGTKFKY GVAARPSKYNMQQGTDIYMFSKASAMQKAAAFKYMKFLVSKSSQLTWANATGYVPVNTAA VNSSEYKDNKSMKTPAIIAKSMKNLYSVPVEKNSNAAYSQLNSIMQNILSAAAKKQSVNS QITAGKAKFDAAWKQ >gi|313656766|gb|GL545251.1| GENE 1692 1563543 - 1564832 1440 429 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 42 392 19 370 419 168 31.0 2e-41 MNIWKKALLSSLVGVSLLTTACSTQKQASVKQESNIPKVTKKTTVVFWHGMSGVQGATLK KLTDEFEKKNPNIKIKLEYQGSYINLQAKLNSTMQSPNNLPTITQSYPGWLYSAAKNKML VDLKPYIADKNVGWNGKDSDINASLLNGAKINGVQYGIPFNKSVEALTYNADMLKKYNVK VPKTMAELKAASKKIYEKSHHKVVGAGFDVMSNYYLLGLKDQGIDFSSKVKFDSKASKKV INYYAEGIKEGYFRTAGSEHYLSGPLANEKVAMYIGTSAGEGFVKKAINGKFKYGVAARP SKYNMQQGTDIYMFNKASAMQKAAAFKYMKFLVSKSSQLTWANATGYVPVNKQVLVDKKY INNPNMKTPAILKDAMKRLYSVPVEKNSNAAYVQAGSNLENILIAAGKKQNYNNLIKQGQ AKLENAWKQ >gi|313656766|gb|GL545251.1| GENE 1693 1564952 - 1565875 822 307 aa, chain + ## HITS:1 COG:lin0568 KEGG:ns NR:ns ## COG: lin0568 COG0598 # Protein_GI_number: 16799643 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 5 303 4 298 301 142 32.0 1e-33 MIKEQTFPVKTIYNWYDISNLSEEDSRILQKDFNFTSDIISYISDRHERPHYDYDQYTQS HLLVYDVPIWPTPSIKHFTANPVTFLVQGNNIFTFHTELTNYVFEEFDDERMREKLSEAE DVTELLMIFLLYSSQYFQRAVTQLNIERNGLDSKLSDYVNNKDLVELSNIEKGLVYLSSS IQTDLLMLHSLNKSHLNSKFTKRSLERLDDVLIESNQSDQMVRISSQVTKTLSTTSNNMM NNNLNDTMKFLTVWSILLTIPTIMTGFYGMNVSLPVFGHSFDWIMISIITIGIMAWLAYY MKRHHFF >gi|313656766|gb|GL545251.1| GENE 1694 1565920 - 1566816 1129 298 aa, chain - ## HITS:1 COG:alr4655 KEGG:ns NR:ns ## COG: alr4655 COG2971 # Protein_GI_number: 17232147 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosamine kinase # Organism: Nostoc sp. PCC 7120 # 1 286 1 305 320 119 32.0 7e-27 MYYQIGIDAGGTHTTAIAYDLTGQELLRVETGQGNINADFDGGMANIKEAVRQIQAKLGS NCERILAGIAGISVTGQYKEVSETLASAFNTKAKAITDSLLALYKGLEGEDGIIVIAGTG SVVNGLQNGKILTVGGYGHLLGDEGSGYAISIAGLKSALHSWDKREKNDLIDLFTKHFEV SEMNDCNQKVYRLERPEIAGLARLIAELADNGSEDAQNVIFSQADLLADDIIMGLDRFAD PKPMAIALTGSVLTNNKMLRTRVEDKVHAKYPNAKFVISSGSNASGILFDKNDDYYTA >gi|313656766|gb|GL545251.1| GENE 1695 1566967 - 1567443 297 158 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855558|ref|ZP_04645861.1| ## NR: gi|238855558|ref|ZP_04645861.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] beta-lactamase class A [Lactobacillus jensenii SJ-7A-US] putative beta-lactamase class A [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 269-3] beta-lactamase class A [Lactobacillus jensenii SJ-7A-US] putative beta-lactamase class A [Lactobacillus jensenii 208-1] # 1 147 1 147 306 203 91.0 4e-51 MKNRIILGAIVASVCSFALYLNNIKKYESATLTISRNQNNSQSVVEKDKKSKENGASLNL ATITKKGNSKLSAQIEKAMKTSDNYDVKVIDLKNSNNSAEVYSEKNKVDVSDSLKAFLLI GLYKEIEQQKLKQQILLLLLKMKLLKGTVVLQLIQFIA >gi|313656766|gb|GL545251.1| GENE 1696 1567464 - 1567886 335 140 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1741 NR:ns ## KEGG: LDBND_1741 # Name: not_defined # Def: beta-lactamase class A # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Biosynthesis of secondary metabolites [PATH:lde01110]; Two-component system [PATH:lde02020] # 1 133 170 298 304 82 40.0 6e-15 MSKNSNTAANLLLNKIGKERVNNIVKEMGANETIISNKFGESVVGSTTTQDLATLMKSLY NGKFLANYSNTVLTGLSTFSVKSPLVSKINNATIIQIGDNKSAVALVNTSKHSYIIAVTS KDNSSFAELGFSISNWFNQN >gi|313656766|gb|GL545251.1| GENE 1697 1567998 - 1568546 487 182 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01665 NR:ns ## KEGG: LCRIS_01665 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 182 1 182 191 205 57.0 9e-52 MVKKRTLDLSKVLAATSELIDKQGIAAVTFPNLAKKLGIRSQSLYHYIDNRTQLLSLVGA NRIKALNENLKENLVGMSGQEAILKFCDLIRDYLLEDSALAAILYHLNEYERDAEINIEL LKVIELGTKLKSDEDEPISVHALVGAVLGYVFFDRSAIFSGESKEERNSNYHQMILRLIE TV >gi|313656766|gb|GL545251.1| GENE 1698 1568560 - 1568793 234 77 aa, chain + ## HITS:1 COG:no KEGG:LA2_09215 NR:ns ## KEGG: LA2_09215 # Name: not_defined # Def: membrane protein # Organism: L.amylovorus # Pathway: not_defined # 1 74 1 74 1214 104 62.0 1e-21 MQKFIKNHVFSLIAWLLILVISIVALPNVNQLTRDHAEIKLPADTQTTIAQTFNNEWSNK TKNTYEIALVFNKKMES >gi|313656766|gb|GL545251.1| GENE 1699 1568994 - 1569641 420 215 aa, chain + ## HITS:1 COG:BS_ydgH KEGG:ns NR:ns ## COG: BS_ydgH COG2409 # Protein_GI_number: 16077632 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Bacillus subtilis # 10 199 148 337 885 186 51.0 3e-47 MQKAIKTQGVATYVTGADILNDDFSASIQEGIKKTELISIIFIFIVLVLVFRSPIVPLIS LFTVGVSFLTAFSIVTNLVKNANFPFSNFTQVFMVIVLFGIGTDYNILLYDKFKENLGNG LAVGEATKDALHKAGKTILFSGSSILIGFSALALAKFSIYQSATGVAVGVAVLLLVLLTL NPFFMMSLGAKMFWPVKSLKVKVKVRFGLSLLLIQ >gi|313656766|gb|GL545251.1| GENE 1700 1569692 - 1570462 878 256 aa, chain + ## HITS:1 COG:CAP0102 KEGG:ns NR:ns ## COG: CAP0102 COG2409 # Protein_GI_number: 15004805 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Clostridium acetobutylicum # 3 236 389 625 1058 97 30.0 2e-20 MALYSGHLNYDDTDEISNDTPSKAGLLVVQKHFSKGMAMPSYLYIKSKHTLDNEKDLKLI DEATRQLQASKGVSLVTSVTQPYGEKVNQLYVNKQLNTVTQGVGSAQSGLTKLSNGSSQM TNGLGQLVSGSQTLTNGLNTMANQLNSQLSTANQSQLSQLQSALPQINQGIQELNSALRS SGASIDTTSLTNNLTDAGNNAKLIGTNLTTAGEILKQLQASTSSTSTDTSQILAQYRAVE AKAGLNDQQNKLWNKL >gi|313656766|gb|GL545251.1| GENE 1701 1570462 - 1571682 1115 406 aa, chain + ## HITS:1 COG:CAP0102 KEGG:ns NR:ns ## COG: CAP0102 COG2409 # Protein_GI_number: 15004805 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Clostridium acetobutylicum # 7 396 644 1030 1058 222 35.0 8e-58 MTILSGVNSKVQAQTSAATTSLEKVAANLQAAGLADQSLGNNLSNVATTLQGLSGLSSQI STLQTEVNKLATASNLALPGANQAITKLSSGLNQVQSAVSSASTGSSQITNGAQKLYSNS PVLTDGINKVNSGLGEGTTYLSGLANSAASDEFYIPRKYLKSSLFQKSINNYMSNDKKMT KIIVVLDSNPSSDKAAVKSHKLSAMVKKSLAGTDLKDAEVVMGGQSSRIEDTRQTASKDF TRTAIIMLVGIGLALIVVTRSILQPVFILGTLLIAYFSSLTINEWFIKAFMGKDMLTWNT PFFSFIMIIALGVDYSIFLMMRYRELDETTASERMVHASAIIGTVVISAAIILGGTFAAL IPSGIPTLIEVAITVIVGLAILVILMPILLSAAVKLAYEGFKKSKH >gi|313656766|gb|GL545251.1| GENE 1702 1571789 - 1572343 476 184 aa, chain + ## HITS:1 COG:no KEGG:LBA1636 NR:ns ## KEGG: LBA1636 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 167 1 175 347 117 32.0 2e-25 MKRCPNCGHLLKIDESVCTYCGYTFSKEAEQNKAEFTKVKQGMSRSQIQKENSTNLMNTV SKLPLKEIFQKMLLWIHKNSTIVFVTGLILMVFTSIVPELGWTCLLLLLGWLFWVCKRDT PVKQYTVDKQLTADLNKTGERFGERADRQRERIINEHPEVEEKVRKVNNLDYLKVLVFIV GEQY >gi|313656766|gb|GL545251.1| GENE 1703 1572349 - 1572759 212 136 aa, chain + ## HITS:1 COG:no KEGG:lhv_1740 NR:ns ## KEGG: lhv_1740 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 135 195 344 344 70 35.0 2e-11 MISLFIFFSKSENTNSLSRTILTFANNQFSSSQTIFAVLVYIGWVYIVITPFLIIYRLLK NQTVRAFVFALVETILLLGLIIYSSRTTAISTFGSLTKQLISTLTAIAVNYYLLIFTSVL TTVLTLINLIKDKKDI >gi|313656766|gb|GL545251.1| GENE 1704 1572802 - 1573299 477 165 aa, chain - ## HITS:1 COG:SPy1067 KEGG:ns NR:ns ## COG: SPy1067 COG1012 # Protein_GI_number: 15675059 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 1 164 296 459 465 175 50.0 4e-44 MDSSTTLAPLNSENAKKKLTNQVNEACEAGATIFYQYPEINEKGAFFRPIILTNISKVNP VFDQELFGPVACVYKVKDINEAIELANDSSFGLGSSIISSDINKAQEIASQIETGMTVIN GRWITAPELPFGGVKNSGYGRELSELGLNAFINEHLVIDCTKINK >gi|313656766|gb|GL545251.1| GENE 1705 1573431 - 1574183 624 250 aa, chain - ## HITS:1 COG:SPy1067 KEGG:ns NR:ns ## COG: SPy1067 COG1012 # Protein_GI_number: 15675059 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 4 249 3 249 465 273 54.0 3e-73 MSNYQSINPYTNEVFAEYSNPSSQHIEQSINLANCLYKKWRHESPKSRSKILNKIADNFE NNRTQMATIMTKEMGKLYVEALDEVDLCINICRYFAQYGPDMLTSVPLNSSLGNSYYLKQ SIGVIMACEPWNFPLYQIIRVFAPNFIVGNPMILKHAHNVPGCAALAEKIIKRAGAPEGS MMNLYLSYKQLADVISDKRIKGVALTGSERGGASVAMQAGKYLKKSTMELGGNDPFIILN DADDALLKKY >gi|313656766|gb|GL545251.1| GENE 1706 1574379 - 1574807 425 142 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_08850 NR:ns ## KEGG: LAC30SC_08850 # Name: not_defined # Def: nucleoside deoxyribosyltransferase # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 141 25 166 167 213 74.0 2e-54 MKLAQEYLAENPTVVRVHFPFDYEFVDPEEPNPKAGIPSLKWQLATYQNDITGLVNANVG VFLYDMDNIDDGSAFEIGYMRAMHKPVILVPFTENPDKVKKMNLMLAQGVTTLIDGNTEF EKLKTYDFNSCMSNPVTGYRIF >gi|313656766|gb|GL545251.1| GENE 1707 1574842 - 1575693 880 283 aa, chain - ## HITS:1 COG:no KEGG:LBUL_1752 NR:ns ## KEGG: LBUL_1752 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 283 1 282 286 285 52.0 2e-75 MLNIDKFVQIRKSLKLSQTELCSGICTQSTLSKFENNGLVPSFKILNQLCERMNISLSDL MGPSDETGVTEQLIEADFSLVSYDYEKLAKIMAKIKQNTLKKSDDKFHYQYLKGQVALYE KNEPMSALYYFNGILTAAELKTDSIYRLLALNGCSEVYFSQKEFDKAKHYYDQIKNEVLK FKVNSNEEAIQVLSILCTAGEFYGEQGDYKHSDKLLNAAYDLCATRHLVFFLARTCLRLG QNIIAQNGDTQKAKERFYDAIAFGRLNDNRQVIEYAQSALKSL >gi|313656766|gb|GL545251.1| GENE 1708 1575695 - 1576306 469 203 aa, chain - ## HITS:1 COG:L141530 KEGG:ns NR:ns ## COG: L141530 COG0657 # Protein_GI_number: 15673289 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Lactococcus lactis # 6 199 61 257 257 60 29.0 3e-09 MTLIPDYRLAPRNIFPAAHQDARNFIDWLLNSSYTDSDDQKNVVQIGASAGGTLALQLAG FYGFPTVTWSAPVDFYNWMKKHKKVLPSPDARTELGISDPDEIAASFYKYFTVTYIGSNN YEALQELDADSYDYHNLNQLMLINSSHELVELSGVFNFIHFLANSGHEIQLLTLPGSGHA MAYANDYIDESLDFLYQAIKRNK >gi|313656766|gb|GL545251.1| GENE 1709 1576686 - 1577039 248 117 aa, chain + ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 9 114 10 115 201 95 43.0 2e-20 MQLSAEKSRKLINVLTLISFIVIIALVIYWWKLGIFTNPNKMKAYLADKKIVGPLLFVLI QIVQVVIPIIPGGVSLLAGVVFFGPIWGFVYNYVGICLGSFIIFIYQEDMESHLFCI >gi|313656766|gb|GL545251.1| GENE 1710 1576973 - 1577290 119 105 aa, chain + ## HITS:1 COG:SP1720 KEGG:ns NR:ns ## COG: SP1720 COG0398 # Protein_GI_number: 15901553 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 8 94 110 196 205 80 48.0 7e-16 MSWFIYYFYLSRRYGKPFILHLVSEETLDKYIKWTKNQKKFNWFFALCIVAPAAPDDVLC MLAGLTQMKFWTYFWIIILGKPWTIAAYSFGLLYGAKWLFGIFKK >gi|313656766|gb|GL545251.1| GENE 1711 1577287 - 1577793 358 168 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116630184|ref|YP_815356.1| acetyltransferase [Lactobacillus gasseri ATCC 33323] # 4 164 14 179 193 142 45 5e-32 MIGKKIYLRRFIKEDGEQLFLWSKNPVYFEKARFTQYKDLTAARRGATLLAERKNSFAIC SLENSKLIGMVELYERGASPSLLNTCEVGFLLDEKYWHQGLMKEALELVCDYAFNKIGMK EIWAGVFQDNDASIQLLKKIGFEYIYQVSYPNLFSSETKKKLLSFTLR >gi|313656766|gb|GL545251.1| GENE 1712 1578107 - 1579363 1468 418 aa, chain + ## HITS:1 COG:SP0411 KEGG:ns NR:ns ## COG: SP0411 COG0172 # Protein_GI_number: 15900330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 407 18 418 424 537 66.0 1e-152 MATRGIKPEELDEVVAIDEKRRAKLSETEALKAKRNEVSKEIAAKKRNKENADDAIKAMR EVGEQIKKLDEEVAELTEKQNYILLRLPNFPDDSDPIGPDESYNQEVRKWNEPTKFNFEP KAHWDLGDDLHILDFDTAAKVSGARFVYYKGAGALLERAVYNFFLDENTKEGYTEVIPPY LVNDDSMQGTGQFPKFTEDVYTIVDNDDPDKPLNLTLIPTAEVPLVNYFRGDIVDGKKLP INVTALTPAFRSEAGSAGRDTRGLIRMHQFNKVEMVKVCKPEESWNELDRLTHNAEHLLQ KLGLPYHVVALSTGDASFTSAKTYDLEVWMPAQNKYREISSCSNCTDFQARRAQIRYRDE DGKVKLVHTLNGSGLAVGRTVAAILENYQNEDGSVTVPEVLVPYMHGMTKITKEDTLG >gi|313656766|gb|GL545251.1| GENE 1713 1583837 - 1584166 345 109 aa, chain + ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 3 102 26 125 135 108 49.0 3e-24 MPATWQRGVPCYGKIMIGNKGFEFYNEKNIQDYIQIPWEEVTYVVAAVHFKGKYIPRFEI RTRKNGNFIFSVKEPHRCLKAMTKYLPADHLRRALSYWQKVKLRLLGHE >gi|313656766|gb|GL545251.1| GENE 1714 1584290 - 1584544 311 84 aa, chain - ## HITS:1 COG:no KEGG:LBUL_1668 NR:ns ## KEGG: LBUL_1668 # Name: not_defined # Def: gamma-aminobutyrate permease related permease # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 81 371 451 456 92 54.0 7e-18 MFLIIWAIMIVTHIRYRKETANENLKSFQMPLFPYLDYLVLAFFVAMIALLLYLDKFRIP MMAALVTFVILYSITKFIREKNNN >gi|313656766|gb|GL545251.1| GENE 1715 1585639 - 1586634 1207 331 aa, chain + ## HITS:1 COG:CAP0066_2 KEGG:ns NR:ns ## COG: CAP0066_2 COG3444 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 164 329 1 167 168 202 61.0 8e-52 MVGIVLASHGAFAEGISQSAEMIFGKQTNFGSAILKPDEGPDDVRKKMEDVIASFDNQDE VLFLIDLWGGTPFNQANKLLEEHGGNWAIVTGLNLPMVIEALTQRFSVESAKEIATAIVD PAKDGIKTKPESLAPKSTVKQEAKPAEVQGDIPEGTVLGDGHIKYVLARIDSRLLHGQVA IGWSKAMNPDRIIVVSDNVAKDDLRKNMIREAAPTGIKAHIVPIKKMAEVDKDPRFGATK ALLLFENPEDALQAIEDGVQIDTLNVGSMSYAVGKVNANSVLSMNQKDVDTFKKLKEKGI KFDVRKVPSDNPENMDAILSKAQKLLDEQNK >gi|313656766|gb|GL545251.1| GENE 1716 1586649 - 1587452 1068 267 aa, chain + ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 267 1 268 268 254 67.0 8e-68 MNAIQMILVVFIAFLAGMEGILDEWQFHQPIVSCTLIGLVTGHLTLGIMLGGSLQFIAMG WANIGAAVAPDAALAGVASAIIMVQGNLGEKQIGTAIGIAVPLAVAGLGLTMIVRTLAVA ISHIMDKEAEKANFRAIGMWQLIATGLQGLRIAIPAALLLAIPSSLVKAWLSAMPAWLSD GMTIGGGMVVAVGYAMVINMMASKEVWPFFAIGFALAAIKDLTLIALGAIGAALALMYLA LESNGTSKNNSGSNGTGDPLGDILDNY >gi|313656766|gb|GL545251.1| GENE 1717 1587474 - 1587689 166 71 aa, chain + ## HITS:1 COG:L147466 KEGG:ns NR:ns ## COG: L147466 COG3716 # Protein_GI_number: 15673690 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Lactococcus lactis # 1 63 1 63 307 105 73.0 2e-23 MAENKIHLTKSDRLKVMWRSMLLQGSWNYERMQNGGWCYSLIPALRKLYPNKEDQKAALQ RHLVSLIPTHI >gi|313656766|gb|GL545251.1| GENE 1718 1587785 - 1588387 755 200 aa, chain + ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 1 200 104 303 303 261 67.0 6e-70 MMGPLAGVGDPVFWYTVRPIVGSLGASLAAQGNILGPILFFIVWNLIRIAFLWYSQEFGY RVGSEITKDLSGGLMGKVTRGASMMGMFVLGALIERWVTINFKPVVSTSPLQKGAYIDWN ALPKGVKAIQQALIQQSQGLSLTSSKVTTLQDNLNSLIPGLAALLLTFLCMYLLKKKVSP IIIIIGIFIVGIAGHVIGLL >gi|313656766|gb|GL545251.1| GENE 1719 1588389 - 1588754 312 121 aa, chain + ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 114 12 125 135 124 50.0 4e-29 MVQSINNQVDLTMPATWQRGVPCYGKIMIGNKGFEFYNEKNIQDYIQIPWEEVTYVVAAV HFKGKYIPRFEIRTRKNGNFIFSVKEPHRCLKAMTKYLPADHLRRALSYWQKVKLRLLGH E >gi|313656766|gb|GL545251.1| GENE 1720 1588877 - 1590256 1226 459 aa, chain - ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 6 457 7 457 458 371 44.0 1e-102 MKKEEKTNTIQTGYRRTLSNSHIQLIALGGTIGTGLFLGVGDSIHRAGPSVILIFIIVGF FLFLLMRALGELILSDLKKHTYIEFIEKYLGKNVGFISGYLYWISWLTLAMAELTALGIY FEYWFPHLPTWLPGLVTMIVLLIINLISAKVFGNLEFSFAIIKILTILAFVAMIGYFLIV GESTKYGDISLANLNAGGGFFAKGSHGFLLGFQMVIFSFIGVELIGLTAAEAQDPKNTIA RAIDQLPIRIILFYVIAIVAILVAIPWPKISTTSSPFVQALSATGIKNAGSIINFVVISA AISSTNSFLYSAGRLLFSVNFDGKSKWSKTFGKLSKTQVPRNALIFSSLIIACAPLITLI IGDSAFTFISSTSTSMFLIIWAIMIVTHIRYRKETANENLKSFQMPLFPYLDYLVLAFFV AMIALLLYLDKFRIPMMAALVTFVILYSITKFIREKNNN >gi|313656766|gb|GL545251.1| GENE 1721 1590670 - 1590993 265 107 aa, chain + ## HITS:1 COG:BMEI1045 KEGG:ns NR:ns ## COG: BMEI1045 COG2076 # Protein_GI_number: 17987328 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Brucella melitensis # 3 104 4 105 110 78 50.0 4e-15 MGYFYLAIAIIGELIGTTLLKMSQGFSKWGIGIVALIAYVICFYFFSKSLKIIDLGVAYA IWSGVGIVITTIIGIIIWKEKVNLITILAITMIIIGIMLLNLMSASN >gi|313656766|gb|GL545251.1| GENE 1722 1591282 - 1592010 954 242 aa, chain + ## HITS:1 COG:no KEGG:LA2_02635 NR:ns ## KEGG: LA2_02635 # Name: not_defined # Def: agregation promoting protein # Organism: L.amylovorus # Pathway: not_defined # 1 242 11 239 239 156 54.0 9e-37 MAVAAVTLTGVMATNLKSNTAHAATIVNNDTDVVTVNYAPGYGIAVWNNPDNPHFTGQRL AHGTSWKVIQTVYSSTGEKWYDLGLNQWVPAKYVVSGYNKSTSNNSVATVAQSSAQPQST VSSNTQTQAVSANSSSSNAYNSASSAANTTSSYTATTTSTSSYTSTATGSEADAKAWIAN KESSGSYTAQNGQYYGKYQLSISYLNGDLSASNQEKVADNYVYSRYGSWTAAKAFWLANG WY >gi|313656766|gb|GL545251.1| GENE 1723 1592126 - 1592323 123 65 aa, chain + ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 51 1 51 199 60 50.0 1e-09 MSKTIYLVRHGQTFFNYYHKVQGRVDSPLTVLGQMQAKVTGDFFRKKELNLIRHFVQRKN EHVIL >gi|313656766|gb|GL545251.1| GENE 1724 1592368 - 1592697 366 109 aa, chain + ## HITS:1 COG:no KEGG:LBA0495 NR:ns ## KEGG: LBA0495 # Name: not_defined # Def: phosphoglycerate mutase # Organism: L.acidophilus # Pathway: not_defined # 1 109 82 191 193 111 48.0 9e-24 MREKWYGIYEGQDEVTLPWNHGSGVVDPNMEADFLAIERMKRAIEYIKNQLSDGEIAIAV GHGAILGMYVRDMFPKTNFHFENCGVVKLIFNGDEIEFGGSYWPAKDLK >gi|313656766|gb|GL545251.1| GENE 1725 1592986 - 1594098 978 370 aa, chain + ## HITS:1 COG:no KEGG:LA2_02770 NR:ns ## KEGG: LA2_02770 # Name: not_defined # Def: hypothetical protein # Organism: L.amylovorus # Pathway: not_defined # 1 370 1 370 371 406 54.0 1e-111 MPRIVKVGAGGDEIDWKEALKTLRADDMLLLKPGFYELEQGISACDVTIKGTGASPEDTI IDGYISVSPDSRYVTLENLTINTVGEKNAIFIPYNADTYLTLRNCFIKTEINENAALALN GKCTVELYSSRIVNGSVSFFSGSDFRLEMNDSKIDYPVTNYCGLALEGIGTAIINNSIID SSLNTFSDTNIELVVNNSRLRDVHLAGQTWLNMLNCQVYSKDDNAFTSDDECWLNITNSV FTGGMYLDGATTMLLQNSHCDRLMAIADTKTTMTNSLCKSHADFQQSAKCDATRSTFNGS EEFKFFLSVNGEAEFKGHDIVLNPNGATLAVQDNATFRSNVLASDQKALSVEYTNLPNVN ILGLKWEKRK >gi|313656766|gb|GL545251.1| GENE 1726 1594186 - 1594887 692 233 aa, chain + ## HITS:1 COG:SP1446 KEGG:ns NR:ns ## COG: SP1446 COG2188 # Protein_GI_number: 15901296 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 229 6 230 235 229 51.0 4e-60 MQEPIYIKIHNKIKQDIENRVYKVGERIPAERQLAQEFGVSRMTLRQAIKTLEDEGILER RLGSGTYVSSQKVQEKMSGVMSFTQITRANGQVPSSKLLSYRITKPFLSEKERLKINEND NVLRMERIRYADDIPICFEVVTIPQKLIKNFSKHDISTSLYKTLEEKGGYKIGSVVENIG ASIANENDARYLKIHRGDALVTRRQVTTLTDGQPFEYTRAEYVAERFEFTFSR >gi|313656766|gb|GL545251.1| GENE 1727 1594913 - 1595299 401 128 aa, chain - ## HITS:1 COG:lin1076 KEGG:ns NR:ns ## COG: lin1076 COG0615 # Protein_GI_number: 16800145 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Listeria innocua # 1 128 1 127 127 189 74.0 1e-48 MKKVITYGTFDLLHYGHVRLLKRAKELGDYLIVGLSTDEFNEFKKHKEAYNSYAERKYIL EAIKYVDEVIPEEDWDQKIKDVQKYDINTFVMGDDWKGKFDFLKPYCDVVYLPRTPGIST TKIKEDLK >gi|313656766|gb|GL545251.1| GENE 1728 1595425 - 1596102 460 225 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1516 NR:ns ## KEGG: FI9785_1516 # Name: tagB # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 216 1 217 382 310 65.0 3e-83 MKTLIFSLYLNVMKAFAHLVPIEKESYVILNGAGRSGSNGYLFYKYLKNIHPELDVTLVE PWPSSHLSWKIWKKIGSAKYIFTTHEPFKIKKQQISISFWHGIPLKRMGVMAHNTAYRGN KRNMNIWHKEADYVVSSSDFYETLMSSCVGIEAKKYVRTGFPRLDYLVKPISKSQILNDL FDCNEAKAKIGIYMPTFRFELEDKNVMEKIKSGNFLHCLILTSKN >gi|313656766|gb|GL545251.1| GENE 1729 1596159 - 1596566 280 135 aa, chain + ## HITS:1 COG:MTH365 KEGG:ns NR:ns ## COG: MTH365 COG1887 # Protein_GI_number: 15678393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Methanothermobacter thermautotrophicus # 11 130 284 406 409 78 33.0 4e-15 MNLVKSSQQSVSNIKLLSNEYLEDNKIDLYEIIGATDFLITDFSSIYFDYLLLNKPIIFI DNLLEQYINKRGLLLSPYQEIVPGELVDNQRKLLDSLAKIDEDEFKEYRQFWKKITLERN NNCCQAVYELTKRMK >gi|313656766|gb|GL545251.1| GENE 1730 1596720 - 1597178 375 152 aa, chain + ## HITS:1 COG:no KEGG:LJ1727 NR:ns ## KEGG: LJ1727 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 137 52 188 489 184 73.0 9e-46 MVFCTLSVSYIGMRTISKIRTNESKKELTEAFWGLWYFQGIAGLITIALTIVVSIIFKVK YWNYILLMVPFLISAQLDIAWFFQGLADFGRVVLRNTIVKLISVLLILILVKGPSDLYKY MLIMSVSTMLGSFVFGLISEIMSGSLLGIFIS >gi|313656766|gb|GL545251.1| GENE 1731 1597322 - 1597999 458 225 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00523 NR:ns ## KEGG: LCRIS_00523 # Name: not_defined # Def: capsular polysaccharide synthesis protein # Organism: L.crispatus # Pathway: not_defined # 1 223 253 475 476 290 69.0 3e-77 MILGVITSITLVMMPKMASEGKEAQKKILRKSLEATVMLGTLFSVIVMVNTKEFVPFFFG EKYIPMTPLMFFFTLTIIFIPMGGVFANQFALANKRDKDYAIPVCIGAVLEVLLSIILDH HFGATGALISILTTEVIVLILRIWIVRDGYEFKYVFKDIPKYFIIGIVSLSIGMLIPQLL TSAFFNMTLKSILVMLIYLGLMFMIKLDFNQDILNVINKFLRRNG >gi|313656766|gb|GL545251.1| GENE 1732 1598001 - 1598735 569 244 aa, chain + ## HITS:1 COG:lin2665 KEGG:ns NR:ns ## COG: lin2665 COG1922 # Protein_GI_number: 16801726 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Listeria innocua # 3 243 4 239 244 181 41.0 8e-46 MPEKVDILGVKFNNYSLKGYKNEISRRLDNKKSTFIVTANPEIVMAANENPIFMKLINQD ADFVTADGIGIIKAANILNKPISERVTGYDLFTWLLDVANQRKKRVYFIGAKEEVISDLG KRIQSEYPNIEVAGLRNGYFKDKLDIIARDITKTKPDMIFAALGYPKQEQLLDILRKKEL PAVMMGVGGSFDVFSGHAKRAPKVWQDLHIEWVYRFLKEPSRFKRFLALPRFIEEVYRSK RGRR >gi|313656766|gb|GL545251.1| GENE 1733 1598735 - 1599823 1022 362 aa, chain + ## HITS:1 COG:PAB0827 KEGG:ns NR:ns ## COG: PAB0827 COG0438 # Protein_GI_number: 14521452 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Pyrococcus abyssi # 13 312 18 314 371 90 29.0 4e-18 MKVLHINAGLEKGGGLFHIINLLTEAKKEGQDFELLTLADGPVSQKAISKGIKTHVLKTK SRYDLTGLKRLAQFINENHFDYVHTHGARANLYLSLIRKKINAKWVITVHSNPLLDFEGR GIMGWIFTQLNLKALKKADGILAITQNFANLLTNKIGIDNKKIHIIYNGIFFHESSDLPA KYDHPYFNLINVARCEKVKGQDLLLKALKDLHDPHIRLHIAGDGSELDTLKDLAQKLNIS NQVTFHGFVNHDELTHLYERCDLAVLTSYSESFPLVLLEAADNLIPLLSTEVGDIKKMIP SADYGFISPIGDLDMIKEQILKASLMPSVELKEMAKREKEYLMNNFSLANQLETIIKAYG EI >gi|313656766|gb|GL545251.1| GENE 1734 1599826 - 1600173 155 115 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|260665375|ref|ZP_05866223.1| ## NR: gi|260665375|ref|ZP_05866223.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] glycosyltransferase family protein [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] glycosyltransferase family protein [Lactobacillus jensenii 208-1] # 1 92 1 92 653 161 100.0 1e-38 MLSNYTKAFAYYIGLGPLFLTLIGLFLPSYQVVFLAECTVALIAALLFININLLTQLNQW FIEKVISISTISCFLTLLLFGMPFASRIVLFSFINLFLISFLRLLGRIPKISFYF >gi|313656766|gb|GL545251.1| GENE 1735 1600331 - 1601470 646 379 aa, chain + ## HITS:1 COG:RC0461 KEGG:ns NR:ns ## COG: RC0461 COG0463 # Protein_GI_number: 15892384 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Rickettsia conorii # 104 244 16 154 604 72 31.0 2e-12 MISIVIYISQLNTDHYFIVPTALFLTALPILGVLVLSYGLVRSELKVKLTPVLIYLLLFT CIFGQAGLIIAQEVINPWFIIELFILLTAILISFSSNISKNSKISIIIPSYNGADTIVQT LDSVISQTYKNWEIILVDDGSNDNTKEVVGKYLKENPNIPVKYLKEENKDQLNAIKYALP HINGEVVHILHSDDLLASKYVLKQGLFSLLNQRVVGTFINLEEVNEQGKHIRLVKTASFY PTKQTLAKAAVTFGRNPYVDVVFWTKDIFENSVYKNYLTNNMPAWFDNENKEILSISNGI FTSLKYRIFEGNYLNSQDGAVNVLSGELRFFHHLVHEMRIPQFKWQSFVYRVLRKLNCDS LYPVIYIKKKSSLSDLTPK >gi|313656766|gb|GL545251.1| GENE 1736 1601781 - 1602479 820 232 aa, chain + ## HITS:1 COG:FN1241 KEGG:ns NR:ns ## COG: FN1241 COG3774 # Protein_GI_number: 19704576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannosyltransferase OCH1 and related enzymes # Organism: Fusobacterium nucleatum # 1 130 1 133 243 125 47.0 5e-29 MIPKVIHYVWVGGNPKPEKIKTCMKTWKKHLGDYEIVEWNESNFDIHENKYVEQAYKQKK WAFVSDYIRAKAIYEHGGIYLDTDVLVLDNLEDLLSNKCFVGFENKDNPFTAVFGAEKGH PLIKDMLDYYNERDFEFDKQDQMAGVNTVSVSDILKEKYGAIPNNQEQVLKDDIHVYPDG ILCNPSKDSKTIHVFTGTWMEGVKPLKRKVVTFLKLRIKTKWQAGLYAQLFK >gi|313656766|gb|GL545251.1| GENE 1737 1602511 - 1603923 775 470 aa, chain + ## HITS:1 COG:no KEGG:LBA1284 NR:ns ## KEGG: LBA1284 # Name: not_defined # Def: cell division protein # Organism: L.acidophilus # Pathway: not_defined # 16 453 14 453 582 240 34.0 1e-61 MNKIGNFFKRYEWLGPFLVMTVIIFAYLYDQVINHSMLIFNDTPFHFGRFWEVHQQIATG KISYFQSNFSFNQSGRIINAVYGPLFALIMGSLTFIFTTWFRFQIGTSILLIYLAGFGFY KMAKETEQVSLPFLNLGLFIFLELGYIPAWIQGQSMMAWGGAIVPWVLRYGIRMIKLKKD QINVIGLAVSMAIAAQTHNLTVAMLILALTPAFIVAFVKSNEKKKLFRDVIFSVIIFLFL SANIIGALLVLKTNNIAMPVPIDLKGIALNITPNLVQRNHITPLMLIVLIITAGLAIINF NKNKLNFWLGLGGASFFFLSTKAFPWGITERLLPFLKTSFQSPSRLTVIAYPLLLVSLSI SLSSIAKRKNLRNIILKWGITGLAVIASISALFDFQAYLHSNTLAYLDNNVVVLYSWVYK VPKSRTIIREDMMSRNQGKLFQDLANSEPDYLPITKKLILARLLIYTDKK >gi|313656766|gb|GL545251.1| GENE 1738 1604025 - 1604255 157 76 aa, chain + ## HITS:1 COG:no KEGG:FI9785_867 NR:ns ## KEGG: FI9785_867 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 62 491 552 563 63 53.0 3e-09 MYKQSTLFLNRKKDRYKFESVAIPVVQARKDMNIATLKFNSPIWFIILLWISIISWIALI IYKGWMFCSKKRKFLQ >gi|313656766|gb|GL545251.1| GENE 1739 1604252 - 1605982 569 576 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0853 NR:ns ## KEGG: LGAS_0853 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 4 568 6 559 563 297 33.0 8e-79 MKIIEFFKRKNILVSFLIITLITFVLTYYQIRYKAVFVYNDTAFHYNRYFDIFQQLKTGN FSYFQTNYGFSQSGRIINAVYGPGFAYLNGLLLLLCKNWFIYQIITTFLLNYLAGYGYLY LCRKIKVKYLYAYVTLPLFLLGGYFPTWIQGNTLMSWGQALCPWIIAEGINFIVKNPSKL SYFKLGIWMAVVAQVHNLTLLMLGPVLLYFAIIGFVKHKNKLVLVKKIGVNIGIFILLSL NVIGGIIVLFNNKIALPVGVALNEHVLHFSSWDYSITNFSYLFVVLLLLQFFFAFYNFKS NKLNFEITMLCMLLILLASRVFPWSFFDKHFPSLQNSFQAPTRLVILIYPLFLSVISLSL SLLSRKVRIENGAKQIILLVLCLFTLMQFNQRRLSQRNSTLNYLNNKMVINYSFPRYISA NRVTIRKSLHSADKNKFLTLFINSEPDYLPINEKTNAISSYGKYIIDKYKNFNHQVLPNG SLQLKWKAKRNEKIILPIVVYKQSILLVNGKRNNKYAKGLNVPIVYSKKGINVANLRFIT PLWFVIMLWITVICWIITIGYLLYKSVRKHRPFLLK >gi|313656766|gb|GL545251.1| GENE 1740 1606020 - 1607177 1412 385 aa, chain + ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 8 380 11 382 495 546 70.0 1e-155 MFYKQIDEDDSLILHTDLYEINMMYTYFKEGISEKKAVFEVFYRKEPFGNGFAVFAGLEH IVQYLNDLHFSESDLAFLKETQDYDDDFIEYLRNLKLNLTVRSMEEGQLVFANEPIVQIE GPLSQCQLVETTILNIVNFQTLLATKAARIKLAVGNDGLMEFGTRRAQETDAALWGTRAA YIGGFDATSNVRAAKLFGIPASGTHAHALVQAFGNEYDAFKAYAETHKDCVFLVDTYDTV RSGVPTAIKVAKEMGDKINFLGVRIDSGDMAYISKQVRKQLDDAGFKNAKIFASNDLDEK TITNLKMQGAKIDVWGIGTKFITAFDQPALGAVYKLVAIEDENGNWQDSLKISSNAIKIS TPGKNKFGEFVQIVIGRMKGTGLLE >gi|313656766|gb|GL545251.1| GENE 1741 1607210 - 1607494 243 94 aa, chain + ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 1 88 400 487 495 115 63.0 2e-26 MFHQQYTYINKVVTDFTAKPLLKDIFIDGNYVDKPRSLDEIKAFCQSNLENLWDEYKRSL NPQEYPVDLSQNLYESKIDLISEIRTKIRNRGLH >gi|313656766|gb|GL545251.1| GENE 1742 1607494 - 1608324 891 276 aa, chain + ## HITS:1 COG:L0203 KEGG:ns NR:ns ## COG: L0203 COG0171 # Protein_GI_number: 15673084 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Lactococcus lactis # 4 275 3 274 274 368 68.0 1e-102 MKKLQKEIIAYEHVLPEIDPEKEIRRSVDFLKDYLKAHPFLKSLVLGISGGQDSTLTGKL CQIAIEELRQETGNKDYKFIAVRLPYGVQNDASDAADAVAFQKPDVDLVVNIKDAVDKTV ASLEQAGVKITDFNKGNIKARQRMIVQYGIAGAYSGAVVGTDHAAENITGFYTKYGDGAS DLVPLFRLDKRQGKALLKYLGCPEHLYLKAPTADLEEDAPDLPDEVALGVTYKDIDDYLE GKEVKLEAAEKIEAWWNKTKHKRELPITVFDDFYKK >gi|313656766|gb|GL545251.1| GENE 1743 1608644 - 1611136 3080 830 aa, chain + ## HITS:1 COG:SP1551 KEGG:ns NR:ns ## COG: SP1551 COG0474 # Protein_GI_number: 15901394 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 1 828 70 908 914 926 60.0 0 MLARFIDQFKDFMIIVLLIAALVSGVVAGEWTDAGIILFVVLMNAILGVVQEARSEAAIE ALKKMTTPVAHVRRDGQVLEVPSTELVKGDVVLLEAGDVVPADLRLTTTESLKIEEAALT GESVPVEKDKSLISKADVALADRVNMAYSSTNVTYGRGEGIVVATAMETEVGKIATMINE ADETDTPLKQSLNQLGKTLTWMILGICALVFVVGILRNPANESQTSLMIDMFLIAVSLAV AAIPEGLPAIVTIILALGTQTMAKHKAIVRKLPAVETLGATDIICSDKTGTLTQNKMTVE KIYYDGQLHDASEVVDANSDVMQTMLLANDTKLRADGLLGDPTETALTQFGLDKGINVAD LLETKKRVQEVPFDSDRKLMSTVNKNGDKYYVAVKGAPDELLKRVSNLSDKEKENILLAN QKMAQNALRVLGLAYKEVDKPFEEVNSQNIENNLIFAGLVGMIDPERPEAKAAVAEAKAA GIRTVMITGDHQVTAQAIAERLGIIEKGQSKRVLTGSELDKMDDAYFKEHVSDYSVYARV SPEHKVKIVKAWQANEKIVAMTGDGVNDAPSLKQADIGIGMGITGTEVSKGASDMILADD NFATIVEAVKQGRKVFSNIQKAILYLMSCNVGEVITVFIMTIMGWDVLQPVQLLWINLVT DSLPAIALGVEPVEDGIMNRKPRGRKSNFFSGGVASSIVYQGILEGVLVLIVYTLGLHIG PHVADPKLQHGDALTMAFLTLGLIQLFHAFNSKYVHQSIFRKHTFQNKWFNWAIVISAII MAAVELPFLTNVFKVTELDLDQWLAVLGTGCLMIIIVELVKLVQRKMGKE >gi|313656766|gb|GL545251.1| GENE 1744 1611242 - 1612723 1028 493 aa, chain + ## HITS:1 COG:no KEGG:LSA1579 NR:ns ## KEGG: LSA1579 # Name: not_defined # Def: putative teichoic acid/polysaccharide export protein # Organism: L.sakei # Pathway: not_defined # 22 479 25 494 513 111 27.0 6e-23 MKIKRWNLKIFTAVVFIYFAVLSLLLGYNADDYWWGGVKSLYSYLTGPMFFNYDGRYVGD GLAIIGMHYPILAALIYGMTLSIIIYSIYSLTKRLDLMIGTFVAILIMPRGIFAQTIGWK AGFFNYALSIVPILILLLVTKYILFDSKVNKLPLYNLIAVCIILFFGSFMSEPITLTILI DTLVLIFVANFLKKSVVKDFFYFFFFSLLGTIAMFANRGYWKNTGVHKYSLGASIPQILL QLRSEYILIFILGLCVSLFILKRSGNSHLPYVLAGFDILVFVLAVVSDKIVLFNKISRLS NYLVILCLGVSIIVFFCNYNLLNKDEFWISLFLVLNAFASIIPYIVVSPFGPRSMLCFYI LMVIFSFYLVAISNSLTRKCFIILISCMAFLYGSFILFKANQINVAKTRNSALIEYQVKN KTYIANNNRFYYVQIPNTDMWWNPRLQTHDDPIISYYKIPNTTVGKLVPWYEVKNISSNQ GELLFKKAKKLVK >gi|313656766|gb|GL545251.1| GENE 1745 1612771 - 1613214 263 147 aa, chain + ## HITS:1 COG:BS_ydcK KEGG:ns NR:ns ## COG: BS_ydcK COG3091 # Protein_GI_number: 16077546 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 143 1 145 150 114 45.0 6e-26 MNEIELLNLIQKISLESFDYPFIGQVKINYRFKTTGGRYHLRDHHIEINAHFLKKEYRQD LVGIIKHELCHYYLHVHHMGYKHQNRDFKILLRNVGGSRYTPDIGLTRKKKYTYQCTNCQ KLYYRVKRINLKKYVCGKCRHKLVLLK >gi|313656766|gb|GL545251.1| GENE 1746 1614059 - 1614268 207 69 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00526 NR:ns ## KEGG: LCRIS_00526 # Name: not_defined # Def: N-acetylmuramidase # Organism: L.crispatus # Pathway: not_defined # 1 69 1 70 215 73 64.0 2e-12 MARSGSRVKKTTLTLVKVFGVLLILVVAFVCFRYYRRQAINNELIRQEQLAREQAAAKEL KIKTDFIKK >gi|313656766|gb|GL545251.1| GENE 1747 1614307 - 1614702 264 131 aa, chain + ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 1 130 75 204 209 147 58.0 4e-36 MPSITIAQACLESNYGQSELSQKYNNLFGVKSNDPNTSKILSTKEYVNGKWITVKASFQI YDSYESSIQAHARLFQNGTTWNKDQYQHVLAAKDYKTQAKALVTDGYATDPDYASKLINL IEQFNLNKYDN >gi|313656766|gb|GL545251.1| GENE 1748 1614793 - 1617057 2527 754 aa, chain + ## HITS:1 COG:L0287 KEGG:ns NR:ns ## COG: L0287 COG0210 # Protein_GI_number: 15673102 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Lactococcus lactis # 6 753 4 757 758 757 52.0 0 MSRETILKGLNPQQQEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEEKGVAPWNILAI TFTNKAATEMKERVQKLLGPAGQDVWMSTFHALCVRILRRDADKIGYSRNFSIADSSEQV TLIKHIEKDLNINPKQYNPRAILSAISNAKNDLLNPKDFEAASGNRPFDQIVSEIYKEYQ KRLGQDQIMDFDDLIMQTLVLFQKDKATLHYYQNKFRYLLVDEYQDTNEAQYQLCRLLAA QYSNVCVVGDGDQSIYGWRGANMENILNFEKDYKDKGVHTVKLEQNYRSTGHILSAANAV IKNNQNRKSKRLWTDQGSGEKITYYRAQSDVDEAIFVISKITEAVKAGKRDYKDFAILYR TNAQSRGFEESLVKSNIPYQIVGGHKFYDRKEIKDILAYLKLVANTSDSMSFNRIVNVPK RGIGAATVDKLLTFANERGIGVGDALSNLELVPVSAAASKKLADFNAKLVDCVAYAQDTS HTVTGLTEKILEDFGYTDALKKEKTLESASRLENLDEFLTVTKRFDDNFEADDDESLPIN DFLSEVTLLSDQDDIEDDGNQVTLMTLHAAKGLEFPVVFLVGMEDGIFPLSRAMLEEDQL EEERRLAYVGITRAREKLYLTNAFSRTMYGKTTSNPASRFVQEIKPEDLETEYAGGVRKA NTNSFTSTNSVPFFNKGERAKSQVYTAKTATKASGAIGAEKQGWNVGDQVTHKAWGKGVV VKVNGTGEDMELDIAFEAKGIKRLLAAFAPIKKV >gi|313656766|gb|GL545251.1| GENE 1749 1617092 - 1617409 325 105 aa, chain + ## HITS:1 COG:PA1529 KEGG:ns NR:ns ## COG: PA1529 COG0272 # Protein_GI_number: 15596726 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Pseudomonas aeruginosa # 5 99 3 97 794 87 43.0 5e-18 MAKLNKKAAQEEIENLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQRLVELEKQFPELVTS DSITQRVGGEIKSDLGKVEHQIPMLSMGDVFQKMSYVNLINGFKN >gi|313656766|gb|GL545251.1| GENE 1750 1617592 - 1617750 67 52 aa, chain + ## HITS:1 COG:SA1720 KEGG:ns NR:ns ## COG: SA1720 COG0272 # Protein_GI_number: 15927478 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Staphylococcus aureus N315 # 1 50 162 211 667 70 64.0 9e-13 MEVRGECYMGKEAFLKLNTERDENGEAVFANPRNAAAGSLRQLDPQVTKKEI >gi|313656766|gb|GL545251.1| GENE 1751 1617819 - 1619099 1245 426 aa, chain + ## HITS:1 COG:lin1870 KEGG:ns NR:ns ## COG: lin1870 COG0272 # Protein_GI_number: 16800936 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Listeria innocua # 1 423 239 661 671 437 53.0 1e-122 MAKLGFHTNETGKRLANLDGVFAYIDEYTSKRDSLSYGIDGIVLKVDDLTLQKQLGNTVK VPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTTVSRAVLHNPDLLK QKDVRIGDTVRLHKAGDIIPEISEVVLSKRPVDSKVYEIPDKCPSCGQALVHLEGEVALR CINPACPAQIEEGIIHFASRPAMDIMGLGPKIVRQLIQHNLVKDIADLYHLTADDLAELD HFGDKSINNLLTAIDNSRQNSVELLLNGLGIDHVGAKAALLIVQRFKNLNKIMQASVSEL TAIDTIGETIAESITTYFAQASVQKLVQELIDSGVNIDYLGEDVSNEEIADNFFKNKTVV LTGKLAHFTRSEFTKKLESLGAKVTGSVSKKTDYVIYGTDAGSKLTKAESLQIALLTEEE AIEKIQ >gi|313656766|gb|GL545251.1| GENE 1752 1619108 - 1620256 1114 382 aa, chain + ## HITS:1 COG:lin1869 KEGG:ns NR:ns ## COG: lin1869 COG4851 # Protein_GI_number: 16800935 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Listeria innocua # 17 379 13 370 371 220 36.0 5e-57 MIVKKFLQVTLLASSMLILAGCGRLGDSDLANNATTTNNKTKKYQTTSTNGGYTVLLKNG KYVTSSTSGLTSSDIDNTVDSVALERGLVSLDKNVFSTSKYVFQEGQKLSSSTISSWLMR ESKSYPDGLNPKNNGKTGETTRNPVILNQILEQDFLTGSGANYKLSGISLGLALNSVDYY QKKSGGPQYSSSISRAKQEAYGKETADKIVARLRKKKGMKNIPIMISLFSKTSQDSLVGG TFFAYGVAEGNSSKITNWKSVSEKSQVLPTVNNESPVNSDDASAFNSFKSAIENYFPNLS GVVATVRYQDGKLTQENIQITTQFYGYVQIQSFARLVQSEAKKYLAKDVPIEIKISSVND VQAVVYKNSGDDSYSSHIYGGQ >gi|313656766|gb|GL545251.1| GENE 1753 1620269 - 1620571 304 100 aa, chain + ## HITS:1 COG:SP0438 KEGG:ns NR:ns ## COG: SP0438 COG0721 # Protein_GI_number: 15900356 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 95 1 95 100 84 51.0 4e-17 MEITKEEIKHVAALSRLEFKDEELDQFTSQMDKIIEMAEQLGEVDTEGVPETTQVVDRDT VYREDKPEHWQDRKEMLKNVPETTDGFIKVPVIIDKDDND >gi|313656766|gb|GL545251.1| GENE 1754 1620571 - 1622010 383 479 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 20 464 21 452 468 152 29 6e-35 MKYLNETIDSLNQKLASGEVDAQKLADETIENIKATDKDINAFITVDEDAKASENLNFAN KLAGIPVAIKDNIVTNGLKTTAASHILDNFIPVYDATVVSKLKDAGATIIGKTNLDEFAM GSSNENSYFGAVHNPWNLDKVPGGSSGGSAAAVASGEVVAALGSDTGGSIRQPAAFNGIF GIKPTYGRVSRWGLIAFASSLDQIGVLTKRVKDAAEVLNVISGADEHDSTVSEKAVPDFT KALGQDVKGLRVAVPKEYMSDAVDEGVRKAVQAQIDYLKENGAIINEVSLPHTKYVVPTY YIIASSEASSNLQRYDGIRYGYRAKDTKNLLDVYVKSRSEGFGEEVKRRIMLGSFALSAG SYDKFFRQASKVRTLICRDFDKIFEDNDVIVGPTTTEPAFEIGSEVKDPIKMYNNDILTI SANMSGVPAASVPAGLVDGMPVGLQIMAKRFDEESVFRVADFIERNNKFYEKKPAGLED >gi|313656766|gb|GL545251.1| GENE 1755 1622014 - 1623444 1924 476 aa, chain + ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 1 476 1 476 476 567 58.0 1e-161 MNFKSTIGLEVHFELKTKSKIFSPSPVTYGAEPNSEANVIDWGYPGVLPKLNKEVYRLGL MVALATHSEITPVTHFDRKNYYYPDNPKAYQITQFFEPLARNGYVEIEVRGKKKRIGIHE MHIEEDAGKNTHGTNGFSYVDLNRQGVPLLEVVSEPDMEDPEEAYAYLEKLRKIVQFTGA SDVKMEEGSMRVDTNISIRPAGQKELGTKVEMKNLNSFEHVRLSLAYEEKRQQEVLLSGG KVQLSTRRFDENSGKTVLERVKEGDADYRYFPEPDIAPYHIKQDWIDEIKTQLPKSADER REDYINKLGLKPYDADVILQTKEASDFFDKAMKAGADPQMTANWMNTQVNGYLNEHHVEL KDIKLTPENLAKMVTLIKDGVISSKIAKKVFAETVANGTDPKKYVEENGMAQLSDLSVLE PMVKEIVDNNPQSVEDFKNGKDRAIGFLVGQIMKQTHGKANPKIINQLLNKELQSR >gi|313656766|gb|GL545251.1| GENE 1756 1623479 - 1624090 659 203 aa, chain + ## HITS:1 COG:SPy0752 KEGG:ns NR:ns ## COG: SPy0752 COG1597 # Protein_GI_number: 15674801 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 4 201 6 200 340 237 59.0 1e-62 MIKKARLIYNPVSGHEQMPKNVADILNIVEQAGYEASAYRTTPEAFSAQHEATRVAKAGF DLIIAAGGDGTINEVVNGVAGLSQRPKLAIIPAGTTNDFARALRIPRDNLVEAAKVILQG KTRKMDVGQAISDNEDKYFVNIAGSGSLTELTYGVPSELKSAMGYGAYLIKGAEMLPSIS KSHMKLSYDNGVYDGDLSMFYLE >gi|313656766|gb|GL545251.1| GENE 1757 1624087 - 1624392 223 101 aa, chain + ## HITS:1 COG:L26628 KEGG:ns NR:ns ## COG: L26628 COG1597 # Protein_GI_number: 15672402 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 1 99 205 302 342 105 50.0 2e-23 MTNSIGGFEQIMPDAELSDGLFQLIVIKTADPLALLSLMVMALNGKHVNDPNIIYTKTRS LKVEMIDNGKKVPFNLDGEIGGYLPVTFKNLKQHIEFYVGK >gi|313656766|gb|GL545251.1| GENE 1758 1624449 - 1625714 1425 421 aa, chain - ## HITS:1 COG:BS_ynbB KEGG:ns NR:ns ## COG: BS_ynbB COG4100 # Protein_GI_number: 16078807 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Bacillus subtilis # 24 414 25 412 421 412 50.0 1e-115 MVLSWKANLPEELQVKIDKVDQMITPRLAEIDEQILHNQQRVLELFRKHRVGEEDLVPST GYGYDDIGRDKLEAIYADYFKADDALVRSQFSSATQAIAVGLFSMLRPGDTLYYLTGTPY DTIQEVIGLAGNKPGNMKEWGINFKATELLENGEVDFEQAKKDLQDPKIKVIAIQRSLGY AVRASFTMKKIKKMLKFIKEVRPDVNIFVDNCYGEFSECEEPTFYGADLIAGSLFKNAGA GIVKGGAFLVGRKDLIEGAGSRLNVPGAGKGEGATWGYLRDMYQGFFMAAHTTGQAIKGM IFTAALCEEMGMDVAPKWNDPRTDIVQTVTFGKPEPMVKFCGAIQHYSPLNSFVDPIPYH QDGYEDDVVMASGSFTEGSTIELSSDGPLRPPYRLYIQGGLSYEHVKIAIAHAVAETFYQ N >gi|313656766|gb|GL545251.1| GENE 1759 1625725 - 1627815 2100 696 aa, chain - ## HITS:1 COG:speF KEGG:ns NR:ns ## COG: speF COG1982 # Protein_GI_number: 16128669 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Escherichia coli K12 # 27 696 26 718 732 587 42.0 1e-167 MDFLNIAVDSSTKLESLPNWQLISLTNISNPASIAAFVVSKNNTAAISRIEKIKSESGLP IPVIKVKNEITDSERKKILSAANNYVTETVPTYLQDLVKFAKDKPVSFTTPGHHNGLYYE KHPAGVIMNKFFGKNLMYADTSDTVPELGDMMTHDGSPLTAEQKAAETYHADKVYFCTNG TTSANSICASAVLRKDDLVLFDRNNHKSLYNSALVMSGAKPVYIKTDRNPLGLIGEMDPE CLTADYLRKEAAKIDPEKAKKKRPFRMAVVQAETYDGVFYDAKWIVDKIGNLCDYILFDC AWGGFEEFLPIMEHLSPLLLDLGPEDPGILVTQSLHKQQAGMAQTSQILKKDSHIKGQER YVDHKHFNHAYLKFVTSSYSYPIYASLVANTYLVSGPGNKKWWNDTLRMGIELRKQLLAK SKLFKPLVCDNFAKIPTEDLMTNSKYWNLSPNASWHGFNRIAANEAMLDPMKITVITPGI DIPNSKYQADGIPGPVVAEFLMEKRIIRAKNDLNSLLFLLTPGDRQEDLDALVNAFLEFE KLYLEDAPLEKVVPKLAMQYPKRYQGYTLQKLCNEMHKYYASHQTFKLQKALFEKENMQS YTMIPAEADNLFMHNESKLVNLKDVVGEVAAEGALPYPPGVFIVAPGEKWQKVDQNYFEV LVGAMENFPGFVPEIQGVYWKQASNGKINVEVEVLK >gi|313656766|gb|GL545251.1| GENE 1760 1628021 - 1629481 1491 486 aa, chain + ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 16 478 9 471 473 341 39.0 2e-93 MKEDVINLDLNKKHYLTWPVIALIDFVTIISFENIFYPFQNQGLSVVISWIFLLFSYVIP YALISSQMSLTFDNQEGGLASWVRRSSNDTLGYWTSWMYWVQSVPYIVDVSNSVIVSFSW IIFGDNSLDKKMSTFWFGMLTFVIILAFILLENRLRNSLEILSLIGGGAMFIMSMLFVAL AAWAVMHGGHKIATQPFNWGAFKPSFSLNYFSTTGLLIFAMSGAELAAPYVSQMKNPKRD FPKAMWMLAIMTGFLTIFGTLALAMFFNAHHIPHDFKMNGPYYAFRLLGESLGMGKVLMY IFAVVQAIFMMAQLAVLLDASSRVFAGDVADKFMPKWLTKKNKNGRPIHSYTFTVGLSLF LLLLTGTLPNINTIYNWLLNINGIISPYKTCWVFFAFVAMRMHQEKYKSDYVFIKNRTGA LAVGFWCLIFTFICATLGFVPQNVDFGTAEFNHQLILNIITVIVLFGLGYILPWMRKREK KREENK >gi|313656766|gb|GL545251.1| GENE 1761 1629619 - 1630458 657 279 aa, chain + ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 8 278 16 286 289 154 35.0 2e-37 MEKKQRIIIFFSLLLILFASLSLIFGLKQTSKSPLPNATATVFFHGYGSSKHAEEQMANY LVKHKYASSIVVADVDFQGKVKFTGNLAAKTKNFIVEVNLQNNKSANNMTYSQSSNYVAK VLSGLKKKWKINNVNLVAHSMGNLQVIYFIKNHGDSKKYPKINKLVAIAGHYNGIIGMDE PKETNLEANGKPKMMNDTYRDLLSVRNTSPKNIKVMNIYGNYKNHGDGSVNNNSSKSLRY LVQKRAKSYEEQEIRGYGAQHSRLHENKEVDQILLKFLK >gi|313656766|gb|GL545251.1| GENE 1762 1630524 - 1630790 293 88 aa, chain - ## HITS:1 COG:SMc03839 KEGG:ns NR:ns ## COG: SMc03839 COG0670 # Protein_GI_number: 15966975 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Sinorhizobium meliloti # 1 83 160 241 245 67 49.0 8e-12 MIGFIVATLVNIFFVKSGAGAYIFSYIGVLIFTGWTAYDANSAKRIFIEYGDQVSDSGLA IMGALNMYLDFINLFMLLLEIFGVNDRR >gi|313656766|gb|GL545251.1| GENE 1763 1630820 - 1631230 513 136 aa, chain - ## HITS:1 COG:SP1972 KEGG:ns NR:ns ## COG: SP1972 COG0670 # Protein_GI_number: 15901795 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pneumoniae TIGR4 # 13 135 14 139 235 58 34.0 4e-09 MDYFSQDSGRRKIQDVTAINSFLTKMYGFMLIAVLVSAVSSYLTMTVFRSAIMNMPQAMF WVIIFLPFALCLGISFKAAKNPTLGFTLLMFLSVVYGVEFSIIASYYTGTTITSAFLSAA GVFAAMALFGTFTKKI >gi|313656766|gb|GL545251.1| GENE 1764 1631388 - 1632611 1032 407 aa, chain - ## HITS:1 COG:BS_nhaC KEGG:ns NR:ns ## COG: BS_nhaC COG1757 # Protein_GI_number: 16078033 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Bacillus subtilis # 3 397 53 450 453 275 40.0 1e-73 MRGFSWDDIHDGIKEGINIAIIPIFIFILIGALIAVWIKGGIIPSIMVLGFHLISGQFFV PSVFIVCSIVGLAIGSGFTTISTIGIAFLGIGASMGQNLALIAGAIVSGAVFGDKMSPLS DSTNLSSAVAESELFAHIKNMMWSTIPAFLGSLILFTILGNSGHIDLTKINRTIATLNHN FSISWWALLPILLMFICAWKKIPAIPTLFSNIILTTIMIFIQDSKMTIPKLTDLLTNGFI AKTDNAQVNALLTRGGISSMMATVALIISTLSLGGLLMKFGIIQKAMQPLVKRLPKTGSL ILVTILSGIGINLFVGEQYLSVILPGRAFKDAFDKVGLHPLALSRVLEDGGSVINYLIPW GVAGSFAAATLGVPVLAFLPFTFFSLLSPIFSILSGFTGIGLKWSKK >gi|313656766|gb|GL545251.1| GENE 1765 1632560 - 1632754 167 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKKIGFGESIIILILLLAILGISVIKFGINPEVPVLFVAALIVFGQNCADFLGMIFMTE SKKE >gi|313656766|gb|GL545251.1| GENE 1766 1633110 - 1634453 1589 447 aa, chain + ## HITS:1 COG:SPy1346 KEGG:ns NR:ns ## COG: SPy1346 COG2265 # Protein_GI_number: 15675282 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 447 13 462 462 418 48.0 1e-116 MQKNQLVKLEITDLSYEAMGVAHLDGMTIFVNNALPGEVVEAKILKVKKSFAFAKIEKLI KQSPDRVTIKLNQWVQTGLASLAHIKYDKQLDFKRQQVINLLEKAHLNKKVNATVASPEE TGYRNKAQVPVRKVKGQLEIGFFRKHSHDLVPMENFFTTDPEIDRVLVATRDILRKNHIP AYDEVKNKGEVRYLEVRRSKANGEMMVILVCLHKDFPQLAKVADEISQISDVVSVILNHN PKKTNVILGKHDYLLSGNPQIEDKIGDVCFKISAQSFFQINSLQTPRLYNLAIEKAGLTS DDTVIDAYSGIGTIGLSVAKHVKSVRGVEIVKPAVQDAKENALLNGIENADYVCGKAEEL MPSWVSEGMKADVIFVDPPRKGLTLEFIEASVKTNPQKIVYISCNPATMVRDLTMYQDLG YDFEEITPVDMFPQTPHVECVTVLEKK >gi|313656766|gb|GL545251.1| GENE 1767 1634508 - 1634747 109 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260665350|ref|ZP_05866198.1| ## NR: gi|260665350|ref|ZP_05866198.1| predicted protein [Lactobacillus jensenii SJ-7A-US] predicted protein [Lactobacillus jensenii SJ-7A-US] # 1 79 1 79 79 130 100.0 5e-29 MAYTFHGLLLVGDYYNNYLPGDFMSNLKDESRYFKSSDSLSLQLTKDKNKTLQISIENQT LIKELFSENQELMLHLKDR >gi|313656766|gb|GL545251.1| GENE 1768 1634769 - 1635047 266 92 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855410|ref|ZP_04645721.1| ## NR: gi|238855410|ref|ZP_04645721.1| hypothetical protein LACJE0001_0452 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_0111 [Lactobacillus jensenii 208-1] hypothetical protein LACJE0001_0452 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_0111 [Lactobacillus jensenii 208-1] # 1 92 1 92 198 166 98.0 5e-40 MYTKTKQKQVEDVLLTQIVVTSEVNNIFKYNDKIYSSQSYESGLDPDMSDFAIAFYEIIY NKKIISNGQIIDMNFAGDTINTGIYMKGQRKR >gi|313656766|gb|GL545251.1| GENE 1769 1635378 - 1635734 232 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157165407|ref|YP_001467497.1| 30S ribosomal protein S8 [Campylobacter concisus 13826] # 1 117 1 117 117 94 35 2e-17 MNRTELFNYIKQTYQTHPEYLWKKFPNYAVFRHQSNNKWYAIVMGVEKSKLGLDGDEKID ILDIKIDPKQAEFLLELPGFLPGYHMNHRTWLTVLLDGTVPDEQIAKLLAASFQATKK >gi|313656766|gb|GL545251.1| GENE 1770 1635835 - 1638333 1067 832 aa, chain - ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 4 829 38 875 883 180 25.0 1e-44 MGGTIHSGDLINQYISFFASYQHTILHDLSSISFSFSNGLGGNTAGNWGYYLLSPFNFIV LLFPTKFLPQALYTVILLKVMVASASFCWMTKKLHHLADPWAISLAIAYSLSSYVINYIG NLMWLDAIAFLPLLVVFVVQLSKGRFSFPYIWLLAITIVANYYTAYMVCLFLVAFFAYQV YLNTSTLKELIKNSSLFILASLTAGAISGVSIIPTAFNLLENKLNYSLPNPNINFFHIWQ ELPASVLFSTRSLQLPLRLQLPLCFVGTITLFLAICFFFNGRIALKTRLASLFLCIFTAS GLLSEKLYLLWHGGQPPVAFAYRFSFLITFIIAFFASYQLANNISRNNLKISISIFAIFL VIYYFRSSKLLLLNSTDCILVLVFSIISGLLIFIYYKNKINAWIPAIFLIFEIFSSATIF WNNVKQPSVKITDYIAQTQSFINQLPKSAKTDRLAKSFLLNDNCGESYIFNYRGAEVFSS NNDPKISEFYSLLGLPGDGYFYFYFSSTQLTDALFDIKAFITTNRLTGYTEGFKNYGLRN DLANNKIWLKNKQNVAYKCNTFPIAFAGYKANNLRLTANHPLENQTRVLNSLTNSKHTYF SKPITAQVTSDNLITKTSKKQLSYQVKKKATPSSVTFTYTAKPNSVGYIVLDNNQLYNYS KIFKITLNNQLLNINSVTYQPLGISVPKNGKVTLKFQMGERNEKGNLFIPQLYLLNKQSL NKTISYAQKNQLKLSKWTNNQVEGTINIKQGQSLITTIPYTTGWKAFSDGKPVKVGKALN RFIALDLPKGKHKITLKHTMPGLKLGIVISVLGFIVMISEYLIIKKHQKKQL >gi|313656766|gb|GL545251.1| GENE 1771 1638545 - 1640455 1984 636 aa, chain - ## HITS:1 COG:L73239 KEGG:ns NR:ns ## COG: L73239 COG0488 # Protein_GI_number: 15673044 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 635 1 635 635 527 43.0 1e-149 MIIAQGHALEKQFGATTLFKDINFSIENNARIGLVGPNGVGKTTLLKIMTGEEESTKGEF TVNKDIDVGYIAQENALDENKSIWDEMITVFAPLIKQGENLTKMQEQIANHPEDSDLLKR YDQMQFDFEQNGGYTYQADIKSVLNGFNFKENTWTKKIGSLSGGEKTRLSFVKLLLKKPD LLLLDEPTNYLDLDTLDWLEGFLKNYDGAILTVSHDQYFLDHLATQIFEMRYGKLTIFKG DYTHYLAERQLRDAQQEAAYEKQQEEIKAAEDFIQKNLVRASTTKRAQSRRKQLEKMERI DPPKHSGKVKINFKADRPSGKEVLIAQDLTIGYPDKTMVNNISFQVNKGDRIAIIGPNGI GKSTLLKTIMKKLAIKSGSIKYGASLDIGYYDQELQGLDYKKTVIDTIWDRHKSMPEKDV RSILASFLFTAKDIDKVVGQLSGGQRARLTLTVLALEHDNFLIMDEPTNHLDIEAKEVLE QALSKFDGTLLFVSHDRYFINQLANKIISVRAGHAKLYEGNYEYYLEEKNKPVNQIPEQA AKTETKVSENKLSYQEQKKLDSQKRKLQRKVDDLEAKIDELEQKEADIQNEMANPEIASN FDKLGPLQEDLSKIQAELDQATNDWEQAVNDLDNFG >gi|313656766|gb|GL545251.1| GENE 1772 1640629 - 1641303 664 224 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 2 207 4 209 215 258 60.0 8e-69 MDKIKIPKATARRLPLYYRYLILLNEEGKEKVSSTELSEAVQVDSASIRRDFSYFGALGK RGYGYDVKSLLGFFKKILNQDTLTNVALIGVGNLGHALLNYNFKRSNNIRISCAFDINSD LTGKIVSGVPVYDMKDMIEQIREQQITIAILTVPQTNAQKTANEIVEAGVRGIMNFTPVR LSAPAGVRIQNVDLATELQTLVYFLESDKKLKIKQINGITCLIN >gi|313656766|gb|GL545251.1| GENE 1773 1641349 - 1641645 232 98 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0944 NR:ns ## KEGG: LDBND_0944 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 3 97 330 424 424 148 81.0 5e-35 MAALKARDTNSLKEIINSKAEVGTLMHKTLLTFKHNLRAVLNGARFSYSNGCLEGFNRKI KQIERTAYGYSNYINLLTRIRLEENKVKEKEPSNLYIA >gi|313656766|gb|GL545251.1| GENE 1774 1641609 - 1642343 458 244 aa, chain - ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 238 130 368 428 131 32.0 1e-30 MTSIARENNLSVNTVQRVLASCSHRFIDNYNYLPEHLAFDEFKGVDKKLHFICLDGQKHE VVQILRNRYKKSLLKYFDKFSPSARANVKTVSMDLNFYYQNIVRACFPNAEIIIDRFHMV QMLTRSFNSLRVLVMKSFDKRARQYQLLKSPWKLYLKSFVDLDKIHPHYNWHFKDYLTQE QVVMEGISCDPRLDNAYNLMQDFMAALKARDTNSLKEIINSKAEVGTLMHKTLWLLLKLE ILIL >gi|313656766|gb|GL545251.1| GENE 1775 1642354 - 1642701 98 115 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0944 NR:ns ## KEGG: LDBND_0944 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 112 1 113 424 160 69.0 2e-38 MSSYNDCIKFSLDIQDPNITFNAHFFKLINGIKYKVFQATLIQPACPFCGSVNLIHNGHL QTNIRFITSNASSPVIIRLNKQRVLCRDCNTRSMAKSKLVNKYCSISNPASFCFN >gi|313656766|gb|GL545251.1| GENE 1776 1643324 - 1644949 1601 541 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 540 3 543 547 621 58 1e-176 MAKDIKFDEKARRSLLKGVDKLADTVKTTLGPKGRNVVLEKSYGAPEITNDGVTIAKAIE LKDHFENMGAKLVSEVAQKTNDIAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIE KATKAAVDELHKISHKVSGRDEIAQVASVSSASEEVGNLIADAMEKVGHDGVISIEESKG VNTELSVVEGMQFDRGYLSQYMVTDNDKMEADLDNPYILITDKKISNIQDILPLLQEIVQ QGKSLLIIADDVEGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLQDIAALTGGTVIT EDLGLELKDTKIDQLGQAGKVTVTKDSTTIVEGAGTKEAIAERVDSIRKEIENSTSDFDK EKLQERLAKLAGGVAVIKVGAATETELKERKYRIEDALNSTRAAVEEGYVAGGGTALVDV KKAITKLASDNEDEQTGINIVLRALSAPVRQIAENAGKDGSVILDHLMSADPEVGYNAAT DKWENMVRAGIIDPTKVTRSALQNAASIAALLLTTEAVVAEIPEEKPAAPANPAAGMGGM M >gi|313656766|gb|GL545251.1| GENE 1777 1645072 - 1645896 667 274 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 3 225 7 231 293 167 40.0 5e-40 MLEEQKYYGFTNDEIFGSIMQNKRFCKAIIQAALPDVNVVSVESIDAQKELGTKSDKSSK SVRLDIAVKDQAGSFYDVEVQVNNNHDIGPRMRYYQSSMDRDTLDRGEPYTSLLRTYLIF LCAFDPFGRGKLRYSFHLYDDEDKDVKLENNAENIIINSKGSGSSDTDLLNLQKLMNDDK IEVTGVFKEIQTQIQEYNDDPKRRNLMRTAELRMKEETAVARKEGREEEQRNTVKVFKAL KPDATVAEGLAWIKANTDVSLSDEEIKAILSENN >gi|313656766|gb|GL545251.1| GENE 1778 1646078 - 1646323 306 81 aa, chain + ## HITS:1 COG:no KEGG:LBA1863 NR:ns ## KEGG: LBA1863 # Name: not_defined # Def: transcriptional regulator # Organism: L.acidophilus # Pathway: not_defined # 1 72 1 72 163 79 58.0 5e-14 MEIGEALKITRKKLNLSQSEMAGDVLTKSYYSKIERGIHEINAQDLIDILNLHGIRIQDF FEEFNFEKTPSEKVTLIIYTG >gi|313656766|gb|GL545251.1| GENE 1779 1646323 - 1646913 285 196 aa, chain + ## HITS:1 COG:no KEGG:LJ1297 NR:ns ## KEGG: LJ1297 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 4 196 83 270 271 82 31.0 1e-14 MGNAYYQKDTDGLLKVIDAIDKFPNSQNNRLARGLRVEAKLLYQGLKYGPEKIDDETIKE VKQLMFNSDNWDELSLNLLSISIPVLKIEELNSIIGSLISKKAPSATSIRAKEIISSILI NFLDKAYKSSFLKGKSITLAFKWLEQVDPSLKNYCFLKIYTNYYHALLSGEKNKTQRIRE FLDDNGMEDLTRYLAR >gi|313656766|gb|GL545251.1| GENE 1780 1647005 - 1647955 726 316 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 5 292 2 296 535 84 22.0 2e-16 MIYQNYSKFKFFWLNFFGLIYSTENIIMAYMVGSLTNMATKKEFSALPQLFIQLVVILTA VLISNLIFNYLKADAIKTTNVKLRTSVLKGMLTSKHEDSANLGFLTNDFKLLETNRYEAE IQILFYSYTVVLALGYSLYLNWMLTLVFLVGASLPAVVSNIFQKQIQTSSVAWTKANDKY VNQTKHLLAGTEVFSLFNKRNAAVAQNRVTVDNLEDKLAKMNLAKNNTNAFLNIIAIGGT FLVPFAIGVVLVIQGQTTLGALFAIIQLSNSFVNPILQILSERNNLTTTKDIVEKLSSCQ LKVKRLKKLQFLTLVA >gi|313656766|gb|GL545251.1| GENE 1781 1647898 - 1648569 368 223 aa, chain + ## HITS:1 COG:ECU03g0240 KEGG:ns NR:ns ## COG: ECU03g0240 COG1132 # Protein_GI_number: 19172984 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Encephalitozoon_cuniculi # 8 217 330 545 585 98 30.0 7e-21 MSAQGQKAEKAAISDFSSLAVKDVNLSRQGNKLANGISFTLNKGEKLAVIGPSGSGKSTL LQFLLYGDFGSAGEIKLDDTVVKAGAFSNLFSYASQKAIIFPESLWFNLTLGADLAESEV RAVCEQLDLGDLVREKGFDYQLGDNADQLSGGQLSRIGLARAILAKRPVLLLDEINASLD KKTAADVENYLLNSDLTFIEVNHHYDSESLAKYDQVVDFSKYM >gi|313656766|gb|GL545251.1| GENE 1782 1648639 - 1649310 716 223 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855601|ref|ZP_04645902.1| ## NR: gi|238855601|ref|ZP_04645902.1| hypothetical protein LACJE0001_1354 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_1654 [Lactobacillus jensenii 208-1] putative TcaA protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_1354 [Lactobacillus jensenii 269-3] putative TcaA protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_1654 [Lactobacillus jensenii 208-1] # 1 223 1 223 223 378 100.0 1e-103 MNTKNKKVWLIVGIVVGVLLYAFHSTRAIITHHADTASSSKVEKKATNSSTESTQKASSS TSKAAKKTDPAAAALTKYKVADLSQAVGDRQAFNPQAINSAQFGAFILLYAAGKLPNSFY NQILTTSNKTNYLNISGGPDDKDKSRSEFTITAEQTEAAYGYFVSGDKVQLFQSVGENPL EPEYKILGQASVKQIIVYVAEHYSDAQVKTYVNRVNNTQGLTQ >gi|313656766|gb|GL545251.1| GENE 1783 1649447 - 1651036 1119 529 aa, chain + ## HITS:1 COG:Cgl0713 KEGG:ns NR:ns ## COG: Cgl0713 COG1479 # Protein_GI_number: 19551963 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 1 515 1 516 811 401 42.0 1e-111 MKGSEKRLISLYDGSNVRMIIPVYQRNYDWTRDNCRQLFDDLVSLIKNNRQNHFFGSVVE MGTQEGIGEVSIIDGQQRITTVYLLMLALVKLLEEEKITSADPQLARRIRVSYLEDEFQP EDKKLRLKPVKNDEMALKRLFKDEKDYLLSSNLTNNFRYFYERILDQELTADELFKAIQK LMIIDISLKQGEDDAQLIFESLNSTGLDLTEADKVRNYVLMNQPVKVQESLYENYWNKIE VNTNYEVSNFLRNYLTFNLKRVPKIQKVYLEFKKYSEKNDSDIEELLSDLERYSEINRDI SNASTGEREVDEVLHRLNILDMRVIKPFLLPLINYWKLNKIDFKALIGSLKVVETFIFRR TMCSFPTNALNKIFATLFSETIKLTNQGNTEFLPVLSYILINKADSSRYPKDSEFLKSFD DKDIYDMNKNARKYLFDRLENQDSREHVNVVDNMQDGNYTIEHIMPQTLSDSWKNTLGSD YKRIYTQWINKLANLTLTAYNSKYSNRSFIEKSILIMVLTKVVLDLMTF >gi|313656766|gb|GL545251.1| GENE 1784 1651033 - 1651527 267 164 aa, chain + ## HITS:1 COG:Cgl0713 KEGG:ns NR:ns ## COG: Cgl0713 COG1479 # Protein_GI_number: 19551963 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 1 155 531 681 811 67 28.0 2e-11 MKNCNQWTEKELLARNDYLKELALKLWPYPETNFQPKQREKVSRTLDEDYDFAGTKIVSY TFKGTPYQVKSWIEMYVNVIEALYEIDPTPLYKVIAMHATKGWKCYLSGTEKNEFTKVAD DLYVYGRTNTWNKLNVLNKLFQIYGIDPAELVFEINEKKIRNNN >gi|313656766|gb|GL545251.1| GENE 1785 1651582 - 1653021 1742 479 aa, chain + ## HITS:1 COG:XF2742 KEGG:ns NR:ns ## COG: XF2742 COG0286 # Protein_GI_number: 15839331 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Xylella fastidiosa 9a5c # 8 478 16 487 519 565 56.0 1e-161 MASKSNDLKFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLKSDYP EDAEDSDAYLADNIFWVSPEARWNNIQKAAKTPQIGEVIDHAMESIEKDNESLRGILSKN YESPDLDRSRLGGVVDLISDINVGGKEAKERDILGRVYEYFLQKFASNEKKNGGEFYTPR SVVKTLVEMVEPFKGTVYDPCCGSGGMFVQSEQFVQEHQGQIADLSVYGQESNPTTWKLA KLNLAIRGIDNNFGAHQADTFTNDLHKGTHFDYILANPPFNVKKWGGEKLKDDPRWKYGI PPEGNANYAWIEHIISKLNPDGKAGFVLANGALSTTLKEELAIRKNLLEADKIDAIVALP DKMFYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMVDRTHREFSNEDIKKIA DTYHAYRGTNKQKYEDVAGFCKIAKLDEIAKNDYVLTPGRYVGLAEQEDDGEPYEVKMW >gi|313656766|gb|GL545251.1| GENE 1786 1653093 - 1654211 632 372 aa, chain + ## HITS:1 COG:HI1286 KEGG:ns NR:ns ## COG: HI1286 COG0732 # Protein_GI_number: 16273200 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Haemophilus influenzae # 29 189 32 191 459 94 32.0 3e-19 MKYKVSQIAEINSNSIKPKLYSGALNYEDTSSVTDNCFIRPIRYDNITEAPSRARRKAAI GDTVISTVRPNNLHYGFIDKNNCDWIYSTGFAVVHPDKKIVDPFYLFLLLSLKSTTQKLQ DIGETSKSTYPAVKPDDIANLQFEIPSLEKQKKISFIFKNLYQKSKLNNQINDNLDDLMT TIFNNKIINSKFEVSSLTNIANYKNGLAMQKFRPTENSESLPVLKIRELNQGSTDNNSDR CSANIDPEVIVNTGDIIFSWSGTLLVKIWSGNKSGLNQHLFKVTSSEYPNWFIYEWTKFH LHKFQSIAAGKATTMGHIKRNDLKSSKVLIPDKVSFDKFNKIMSPIYEKRLELIKENQSL MTFKENLLTKYF >gi|313656766|gb|GL545251.1| GENE 1787 1654264 - 1656939 2190 891 aa, chain + ## HITS:1 COG:alr4604 KEGG:ns NR:ns ## COG: alr4604 COG0610 # Protein_GI_number: 17232096 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Nostoc sp. PCC 7120 # 1 887 1 897 963 671 42.0 0 MNSIKEESIENDALESLEKQGYQVIKSEVYNHTSKIIDAERNNDHTKFILEPRLSKVLKE LNPGYSDDIYRRALHEFSKLADNPDMMINNHYMHKLLIEGVKIKTSENGENKTVTLHVID FDNWENNDFLATNQFEIVQGEKSRRTDITVFVNGLPLITFELKKPDNENITVKEAYEQLQ TYKAEIPDYMKYNEILIASDGVNARAGSLTAGFDRFMRWRQPKNELVPEGSLELDILIEY MLKPKTLLNIIQNFIIFETNGDSTVKILTAYHQYYMVNKAVVAAERALKSNSDKRIGVVW HTTGSGKSLSMVFFSGIVARKLGNPTILVINDRNDLDDQLFGTFAQAHEYLQQTPDHAEN RDEVRDYMSRNSGGIVFSTIQKFSPDFERGENEMPVLTNRSDVIVMADEAHRTQYGLQAE LTKNGVRYGYAKYLRDALPNASFIGFTGTPIDTADKSTVAIFGNYIDVYDITQSVADHAT VRIFYESHIIPLKLKSGSEEKFNELMDEYDLNTEASDSEKEARNKELTKLEAIAGAKQRL EAIAKHFVSHFEARQKEEFGKSMIVEISRINAVKLYNEIIKLRPNWESSDIHKGKIKIVM TSSPSDGPELAKHNTSKQDRRILQQRMKDNSDELQIVIVVDMWLTGFDVPSLNTLYVDKP MKGHNLIQAIARVNRVFKNKDSGLIVDYIGIADSLKLALSIYSKDDKDQVGINVEKVLAL LKDKYNIIKNDFLYGIDYSGFDSKDDIVRTRTVNKVANELIAEDKDTIQKFCDVVTETQK LYALVAIQPAAQEIGPEIAFFRLVKVFIMKLLSNNDDHERKNIDYRLRQMIDQSIIAEPE VDVYKSLGLEKPRLDTISPEFLKKVQNLNEKSLAVRILEKILRGQIKVCLQ >gi|313656766|gb|GL545251.1| GENE 1788 1656936 - 1657373 450 145 aa, chain + ## HITS:1 COG:PM1541 KEGG:ns NR:ns ## COG: PM1541 COG0610 # Protein_GI_number: 15603406 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Pasteurella multocida # 2 141 907 1046 1057 129 47.0 2e-30 MNIVQGKKFQEMLEASIAEYNRRGINTEIVIRELIEMAQKINAEQEKGKDLGLTPEEIAF YDALANHEKAVQVLGEEKLHLIAKELVKTVKANAGVDWERRAAVQAKMIMAVRHLLRKYG YPPDISADATKLVVSQAKQMAIRPI >gi|313656766|gb|GL545251.1| GENE 1789 1657629 - 1660211 2815 860 aa, chain + ## HITS:1 COG:BS_mutS KEGG:ns NR:ns ## COG: BS_mutS COG0249 # Protein_GI_number: 16078767 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus subtilis # 1 856 1 857 858 837 50.0 0 MAETTPMMKQYYDIKSQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTENPI PMAGVPHQAVDSYVNTLVEKGYKVALCEQLEDPKQAKGMVKRGIIQLVTPGTMMNEGPNG AKESNYLTSVFSTKSGFGLAYSDLSTGEIFTTHLKSFADVLNELLSLRTKEVVFEGSLSD SQKDVLKKSNITVSTPIQDQEKHAEVSYAIQKLSNQAEKDATKQLVTYLLVTQKRSLAHL QIAKSYEVSQYLQMSHVVQNNLELVASAKTGKKMGSLFWLLDKTNTAMGGRLLKQWLARP LLSISEIEKRQKIVQAMLDNYFIREAVKDALKGVYDLERLTGRIAFGSANARELLQLSRS LDAIPQIQSALFESGDEDLANFADQIIDLSELAKKIKDTIVENPPILTTDGGLIREGINE QLDRYRDAMNNGKTWLAQLQAQERTATGIENLKIGYNKVFGYFIQVSKGNIAKVPEGRYI RKQTLTGSERYITPELKEHENLILEAENKSTDLEYQIFSDLREYIKTFIPKLQELGNTIA SLDALTSFATVAEENNYCRPSFHQDSQEIKVIAGRHPVVEKVLADGSYIPNDIQMADDTS VFLITGPNMSGKSTYMRQMALIAVMAQVGSFVPATEASLPIFDQIFTRIGAADDLISGQS TFMVEMSEANEALQNATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKTLFATH YHELTDMEKTLDHLKNIHVGATQENGKLIFLHKILPGPADQSYGIHVAQLAGLPNKVLRE ASKMLKRLEAQGANGLEPASLQLDLFSDSSETEETTSDEAISDTEKQVIEDINNLYLADK TPLEVMQLVASWQQDLKDED >gi|313656766|gb|GL545251.1| GENE 1790 1660211 - 1662076 1762 621 aa, chain + ## HITS:1 COG:SP0173 KEGG:ns NR:ns ## COG: SP0173 COG0323 # Protein_GI_number: 15900110 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pneumoniae TIGR4 # 1 619 1 635 649 459 42.0 1e-129 MAKIHELSETLTNQIAAGEVIERPASVVKELVENAIDAKASQIEIEFIDAGLKEVIVRDN GSGIASEDLDLAFRRHATSKISKERDLFKIATLGFRGEALASIVAVSHTEVITSTDGIKG VKAEFAGGEKLSEETHASTKGTEIKVSDLFYNTPARLKYLKSPRTETMKIVDIVNRLALG HSEIAFTLKNEGKLLLKTPGNNNLRQDLANIYGRFIAKDMIEFSKEDPDFKVSGLLSTPE TTRSNRNFVSILLNGRYIKNYQLTKAILAGYGSKIAQGRYPIAVILIELDPFLVDVNVHP TKEQVRLSKEKELSRLITEGISTALLENTSQVSALANLNKEVDRQDQLAFNLNKNVVDTT RTYEEQPAKEEKQISDQEVSYVDLNQVREDDRYVLTASWDKNVAIQVSLTPFTKKANKKE DNLLTKGDEKIAYSLPYLTYCGQVGAYLLASNEDDLYLIDQVSAERALKYCDILKQMQET DYQQTLLTPLVLDFGSEDYLEIKNHLSELREIGLILEDFGQNSLLLPSYPLWLKDESERN IRELLDLFLTSKKDNLAGIKASLAKAEVKRRVRKEKLTKEGAQSMLEQLASLADPYYDPF GQLIIVKITDTELDHMFKKGE >gi|313656766|gb|GL545251.1| GENE 1791 1662079 - 1662666 788 195 aa, chain + ## HITS:1 COG:L0266 KEGG:ns NR:ns ## COG: L0266 COG0632 # Protein_GI_number: 15674189 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Lactococcus lactis # 1 191 1 197 197 164 48.0 1e-40 MYEYLEGTVTIITPSFIALDVGGQGFKIYSAKPYSYSEGQRIRVYVEQVVRDNDISLYGF ESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKTASQ IVLDLKGKLGSYVEQDLFTADTSQALSDALLALSALGYTKKEVEKVKPKLEKSTYDTADE YIKEGLKLLLKKNSQ >gi|313656766|gb|GL545251.1| GENE 1792 1662691 - 1663701 911 336 aa, chain + ## HITS:1 COG:SPy0038 KEGG:ns NR:ns ## COG: SPy0038 COG2255 # Protein_GI_number: 15674280 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pyogenes M1 GAS # 8 331 9 328 332 407 63.0 1e-113 MDEDSRVVAGEEEQEDLQDELSLRPQSFSQYIGQKRVKSEMEIYIQAAKKRDEALDHVLL YGPPGLGKTTMAFVIANELGVNLKNTSGPAIERAGDLVALLSDLDPGDVLFIDEIHRLAK PIEEILYSAMEDYYVDIVVGEGSTSHAVHVPLPPFTLIGATTRAGDLSAPLRDRFGIVEH MQYYTIGDLEKIIQRSSEVFSTKIGKEAAHELARRSRGTPRVANRLLKRVRDYAQVKEEN KISLATTKYALDQLQVDNEGLDLTDRKILRTIIEAYHGGPVGIRTLAANIGEDTDTIEAV YEPYLLQHKFITMTPRGRVATQKAYLQLGIPLPEES >gi|313656766|gb|GL545251.1| GENE 1793 1663770 - 1664144 545 124 aa, chain + ## HITS:1 COG:BH1229 KEGG:ns NR:ns ## COG: BH1229 COG1862 # Protein_GI_number: 15613792 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Bacillus halodurans # 11 96 3 85 88 70 39.0 7e-13 MNISFMAAAAGFGSYSTIIMMIVLVGFTYFFMIKPQKKRQQQAMDMLSKLKKGDKVILVS GLHAKIDSVNDKDKTVVVDADGIFLTFSKMAVRQVVESAPKQEVNPAETEEKAASEEEQA NEDK >gi|313656766|gb|GL545251.1| GENE 1794 1664235 - 1665683 1421 482 aa, chain + ## HITS:1 COG:lin2085 KEGG:ns NR:ns ## COG: lin2085 COG0364 # Protein_GI_number: 16801151 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Listeria innocua # 7 479 10 487 491 433 47.0 1e-121 MKNIPVIMTIFGGSGDLAHRKLYPALFNLYEQDLIKDNFAVIGTARRPWSHDYLREQVMD AVHENNKEVDENHLKQFASHFYYQSHDVTNTEHYQAIKDLANDLDSRYSAQGNRIFYMAM APRFFGTIATHINDQKLIGSGFNRIVVEKPFGRDLASASELNEEIKASFNENSVYRIDHY LGKEMIQNILPMRLSNPLIKNIWSGEYIKNIQVTLAENLGVEARGGYYETSGALRDMVQN HIFQIITLLAMGEPTALTSEAIHAKKQELLDSMVIPSADEIKTAFVRAQYAGTDDTFGYL QEPNVAPDSKTETFAAGKVKFTKGSLANVPIYFRTGKKLREKKNRIDIVLKHMNNLYGQA HSNNITIIIDPKSEIYFTINGKRISEPGIRRENLAYEFSDYENSLVPDGYERLLHDVFVG DQTNFTHWSELAKFWEFIDAVEDAWQGENKTIDKLIQYPQGKLGPKQASEIFETPTERWI YE >gi|313656766|gb|GL545251.1| GENE 1795 1665683 - 1666798 848 371 aa, chain + ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 7 366 8 364 364 313 46.0 3e-85 MDLLPKNDIHRKIIHLDMDAFYASVEMRDNPELKNKALVIAHDPREYNGHGVIATANYLA RQYGINSAMPAIEAVRKIPKDKLVFVTPNFDKYRHVSAQVHEIMHAVTDQVESVALDEAY MDVTNNKLGNFSAIELGCYMQERIYKELHLGASFGVSYNKFLAKMGSEYAKPFGRSVILP QEAVAFLADQPIKKFPGVGKKTQGTFKELGLQTGRDLQQLSVKKLTSLFGKFGYQLALHA HGIDFSPVKAQRKRKSIGRENTYLPVLFDQNEILRNLRNFAEVISKQLKEKKLQGKVVTI KVRTPDFVTKTKRQTLPKFTSDEQVIYQASYELLRQVDCQTAGIRLLGISVSQLESIRYA EINLGLFSTDW >gi|313656766|gb|GL545251.1| GENE 1796 1666858 - 1667817 712 319 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 8 307 6 305 311 278 47 4e-73 MSNTTFDEIYAKIKEYDTIILHRHISPDPDAIGSQAGLGRSIKLAFPEKRVLYAGVDWGD LTWINKGDDIKDEDYKGALVITTDTADRPRVSDQRYDMGDFLIKIDHHPNVDPYGDLYYV NDQAPAASEIIADFLISQKMPITAEVALPIYAGIVGDTGRFMYPETTAHTFEIAAMLAKT GIDLTQIARNISDVTFKQAKLQSSVLDYMTVDKSGAAYAVLTQADLKKMGVTTEEASVTV STPGRIKDILTWSVIVELEDGTYRVHYRSKGPVINGLAAKHNGGGHALASGAKAKDEAEI KQIFAELIDVTNKYKEEHE >gi|313656766|gb|GL545251.1| GENE 1797 1667935 - 1669167 1364 410 aa, chain + ## HITS:1 COG:lin1488 KEGG:ns NR:ns ## COG: lin1488 COG0513 # Protein_GI_number: 16800556 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 4 382 48 425 435 338 47.0 1e-92 MLVQAATGSGKTHAYLIPALNEVAPSSQTTQIVITAPSRELAQQLYNVARQLRDASNLDL SISLLAGGSDRERQISKAESKAPQVIVATPGRLLDFAKKRIINLENTKCFIIDEADMSLD LGFLGDIDQVAARMPKTVQIAAFSATIPVKLDNFLRKYMQKPERIIVENPAVIAPTIKND LLDIGSKDRKNILYKLLTMGQPYLALVFANTKTKVDEITSYLQDQGLRVAKIHGGITERE RKRTLRLVRQGDFQYVVATDLAARGIDIDGVSLVINYELPKDLEFVIHRIGRTGRNGLKG HAITLIREEEMNLVGQLEHVGVQFNFVELKNDELVERTHYRRRIQRSATNHKLDNRLIGY VKKAKVKKKPGYKKKIKKAIAEDAKQKRKLEKRHEARVEKRRRKRKRVDK >gi|313656766|gb|GL545251.1| GENE 1798 1669393 - 1672029 3547 878 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 872 1 870 879 937 55.0 0 MKKLTSSEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKN RRITSSQKSIRTNDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL DKDKLYCTVYPKDVDSQRVWEKAGMPKDHIIKLEDNFWDIGEGPCGPDTEIFYDRGQENN DVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLERVLSILQD APTNFETDLFMPMIHETEKMSAGKKYATNKEDDVAFKIIADHVRAVSFAIGDGALPSNSG RGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKVMESHYPEVLKQAPFIQKVIKNEED RFGATLESGLTLLDDLIEKASANDDKTISGKDAFKLFDTYGFPYELTFEAAQDKGLKVDK AGFDKEMEAQKERARKARGDLQSMGRQDETLMNIKDKSEFEYGVYEEKHAKLIDIVVNDK LVDKADGESATLIFDKTPFYAERGGQVADHGDIYDQDGDLVAKVIDVQHAPNDQNLHFVD LVLPMEKGKEYVLKIDAHRREGLRHSHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFD FTAIDPMTPREIETVERLVNQKIWENIEVKTTITDPETGKKMGALALFNGKYGDKVRVVQ VNDFSIEFCGGTHCANTAQIGIFKIISEQAIGAGIRRIEAVTSEKAYEYLANRDALLEEI KKEVKATKAEDIKTKITSLEEELHASQKKASELESEINAAKASDIFENVQEVNGLKVIAA IANVNGMNDLRELADNWKSSNKSDVLVLACANDGKANMVISLTDAALDKGLKAGNLIKVA APIFGGGGGGRPNMAQAGGKNPAGLKDAIAAVINEINK >gi|313656766|gb|GL545251.1| GENE 1799 1672085 - 1672342 382 85 aa, chain + ## HITS:1 COG:BH1268 KEGG:ns NR:ns ## COG: BH1268 COG4472 # Protein_GI_number: 15613831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 85 1 86 90 107 67.0 8e-24 MSSLDKTMHFDFNQNKGKNVYDTLQDVYSALEEKGYNPTNQIVGYLLSGDPAYIPRHNDA RNLILKHERDEIIEELVKSYLGKDK >gi|313656766|gb|GL545251.1| GENE 1800 1672342 - 1672788 319 148 aa, chain + ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 136 139 155 60.0 2e-38 MRLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKLVREYDVTGFVLG LPKNMDGSDGVSVSRSKNYGKRLEDKFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRK EVIDQMAAVLILQNYLDLKRRNTDGSNN >gi|313656766|gb|GL545251.1| GENE 1801 1672772 - 1673086 473 104 aa, chain + ## HITS:1 COG:BS_yrzB KEGG:ns NR:ns ## COG: BS_yrzB COG3906 # Protein_GI_number: 16079792 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 12 99 5 90 93 73 50.0 7e-14 MAATINPGDDKDRQITLVDDQGNEELFEILFTFHSDDYDKSYVLLYPAAIAEDEDIEVQA FSYDANADGDVTSSDLHEIESDEEWAMVQGVLNTFLDDDRLSGE >gi|313656766|gb|GL545251.1| GENE 1802 1673135 - 1674910 1948 591 aa, chain + ## HITS:1 COG:BH3106 KEGG:ns NR:ns ## COG: BH3106 COG1193 # Protein_GI_number: 15615668 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 4 587 3 600 785 462 43.0 1e-130 MNHKILKILEYPRITEKLAQEAVTDTAKKQAQDLQPSDNSAQVRLMLSQTRAVANLLRIR GQLPIVNFKPLEGSLKRLKVKASLNAEELANILLILTLAKEINDFIEKNEDAELDLSAID KILQDLQLPAELLSELKHSIDFDGSVLDSASTELARLRHDLAANEEEIKNKMTALTKSAS KYLSEGLVTIRDDRYVLPVKQEFKGKLGGVVHDQSASGQTLFVEPEAVLNLNNRQQSLLA QERKEIRKILKHLSALAGEDTECLRKISDALTELDFLQAKAKLAKKMKATQPQISDNHEV LLRQARHPLIDPEKVVPNDISLGIDFDTMLITGPNTGGKTITLKTLGLIQLMAQSGLFIP TSENSQVGVFDEIYADIGDEQSIEQSLSTFSSHMNDIIYIMKHVNKNTLVLIDEIGAGTD PEEGASLAIAILDELREHGAKIMVTTHYPELKLYGYNRDRTTNASMEFDVKNLTPTYILQ VGIPGYSNAFAITRRLGMNEKVVKKAESLTKDSDSELNKMIARLNEQTKEVTAKRKFLAK NLEKSEELLKKLQDGLDIYNQRVQRQLEFANERANEVVAKKRKKPKQLLRN >gi|313656766|gb|GL545251.1| GENE 1803 1674982 - 1675494 412 170 aa, chain + ## HITS:1 COG:SP0406 KEGG:ns NR:ns ## COG: SP0406 COG1193 # Protein_GI_number: 15900325 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Streptococcus pneumoniae TIGR4 # 1 170 607 777 778 141 44.0 7e-34 MSKEADNLAHNKVLRREKKRHNVAVGDQVKVLSYGQVGTVTKKLSDHDYEVQMGIVKLKV TDRDIEKEANKALKKKQTIVRTTRKLNRASASSQLDLRGQRYEEAMVNLDRYMDASLLAG LSSVVIVHGIGTGAIRQGVWQYLKSSRHVKSFNYAPANEGGNGATIVELK >gi|313656766|gb|GL545251.1| GENE 1804 1675582 - 1675893 459 103 aa, chain + ## HITS:1 COG:lin1196 KEGG:ns NR:ns ## COG: lin1196 COG0526 # Protein_GI_number: 16800265 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 101 1 102 103 127 59.0 4e-30 MVEALTDQNFAEETKEGVVLTDFWATWCGPCRMQSPIIDQLAEERQDVKFTKMDVDENQS TAKNLGIMAIPTLIIKKDGEVVDRITGYTPKEKLDEILDQYTD >gi|313656766|gb|GL545251.1| GENE 1805 1675945 - 1676340 454 131 aa, chain - ## HITS:1 COG:no KEGG:lhv_0448 NR:ns ## KEGG: lhv_0448 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 131 5 136 137 147 58.0 2e-34 MQENNEHSYFINQLYRDFLLPTILGEDTKEILYWAGKKIANKYALSDTESLIDFFQMAQF GDLKLITEKRVGATFELSGQVVEDRLNSDNKDFELEAGIISACLASANQRDCESSVVIND KENKVQIIAQY >gi|313656766|gb|GL545251.1| GENE 1806 1676429 - 1677229 861 266 aa, chain + ## HITS:1 COG:SP1881 KEGG:ns NR:ns ## COG: SP1881 COG0796 # Protein_GI_number: 15901709 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Streptococcus pneumoniae TIGR4 # 1 261 1 263 264 202 41.0 7e-52 MDNRPIGLLDSGLGGLTVLKKVMKKLPNEATVFIGDQAHMPYGDKTTEEVIELTRRSVNF LLSKNVKVIIFACNTATAAAMEVIQKEITPQIIGVIQSGSLAAARTTKNNKVAVIGTHVT IESHAYSREIKFRNPDIEVTELATPQLAPLVEAQRDYAYNIDVVRDSLDSLKEKEFDTMV LGCTHYPIIEKEISKVVGSTIKLVDPADQVAQYTENVLKRDGMLAGKKGKREYYTTGDCQ KFTEIARKWLDDPELVATHVETGEDL >gi|313656766|gb|GL545251.1| GENE 1807 1677226 - 1677843 421 205 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Shigella sonnei Ss046] # 1 198 1 194 197 166 45 2e-39 MSKVLLFATNNKNKVKELKAAFRKAGLDIEVKTNADLEAAPHVNENGSTFEENATLKAHA LAEFSKMPTLSDDSGLVVDKLNGAPGVHSARYGGEAHNDARNNAKLLASLGGIPEEERSA KFCSTFVLSMPGHFDKDLVVTGECEGVVLAIPRGHDGFGYDPLFYVPEKGKTFAEMTTDE KNEISHRGKALKQLVEKMPAWLEQF >gi|313656766|gb|GL545251.1| GENE 1808 1677854 - 1678033 249 59 aa, chain + ## HITS:1 COG:SAS044 KEGG:ns NR:ns ## COG: SAS044 COG1942 # Protein_GI_number: 15926943 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Staphylococcus aureus N315 # 1 55 2 56 62 63 54.0 6e-11 MPFVHIELIKGRSPEQLENLMKDVTDAVHKNTGAPKEHIHVIINELGPHTYGQGGQWRA >gi|313656766|gb|GL545251.1| GENE 1809 1678063 - 1678884 877 273 aa, chain - ## HITS:1 COG:lin1012 KEGG:ns NR:ns ## COG: lin1012 COG0668 # Protein_GI_number: 16800081 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Listeria innocua # 4 269 3 268 281 145 34.0 7e-35 MYTLASKMFSNWSIDWSKYLNSFISVIWQLSITTAIFLLINNFGKRVITKYFLKGKVKLN KRSQTIANLSTNVFQYTTLFFYLFGVLSILGVPVGTLIASAGIFSLALGMGAQGFVSDLV NGFFILSEDQYNVGDLVKIGTETGTVVRLGIRTTCIKQIDGSLTYIPNRKILEVTNLSHG GTGIDIELNLLAKNDLTKVNTLINQVNKQLKRNEKFLSTPPTNYGVTKQEGPNVTIQVHL QVIGGNSTEIKNNYLSGYIKAFQDAGIEFAHLK >gi|313656766|gb|GL545251.1| GENE 1810 1679000 - 1679425 560 141 aa, chain + ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 11 126 9 119 135 70 38.0 6e-13 MLISYGALAGLIAAVAFLLFVLFTIPVLLRTTKTLKKVEQTMDITNDALGKMSNDIDDIM KQTNDLLDKTNNLLEDVNSKMKTVEPVVQAAADLGESVSDLNSSSRKLATRFSEVNIKKT GLMTTILTSILARRRRRRGLD >gi|313656766|gb|GL545251.1| GENE 1811 1679447 - 1679776 526 109 aa, chain + ## HITS:1 COG:no KEGG:FI9785_505 NR:ns ## KEGG: FI9785_505 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 109 1 109 111 108 62.0 6e-23 MKKLGAFVFGTVVGAAAGLAAAAYLLPDETIEELKQKLDNNETLNDLKKKYDNSTEVVKN QLAAFPKNVEDDSELKDFDDIVIDSTKHNLGSNENDDNETLSDLENAEK >gi|313656766|gb|GL545251.1| GENE 1812 1679812 - 1680924 1433 370 aa, chain - ## HITS:1 COG:L96847 KEGG:ns NR:ns ## COG: L96847 COG0006 # Protein_GI_number: 15673631 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Lactococcus lactis # 3 361 4 359 362 370 51.0 1e-102 MNLDKLQNWLAEHNVDAAYISNPITIAYFTGYEMEPEERIFALLAFKDAEPFIFCPALNV EEAKHSEWNGDVYGYLDHENPWQIIKNHVEKRTKSFKHWAIEQNNLPVERYNFLRQVFNN SDFDTNLSEFIDHLRLYKTPEEVEKLKAAGAEADFAFQIGFDNIATGVTERYIAGQIDYQ LKLQKGVMHQSFETIVQAGENASNPHLGPTMNTIKPNELVLFDLGTMHKGYASDSSRTVA YGTPTDKQKEIYEIDREAQQAAIEAAKPGITAAELDAVARDIITKAGYGEYFIHRLGHGI GKNVHEFPSIMQGNDLVIEEGMCFSIEPGIYIPGVGGVRIEDCGVVTKNGFEPFTKTDKS LKYIPLRDKK >gi|313656766|gb|GL545251.1| GENE 1813 1681073 - 1682071 1287 332 aa, chain + ## HITS:1 COG:lin1640 KEGG:ns NR:ns ## COG: lin1640 COG1609 # Protein_GI_number: 16800708 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 6 332 3 334 335 315 52.0 5e-86 MHKQEVTIYDVAREAKVSMATVSRVVNGNNNVRKETRDRVMEVINRLHYQPNAVAQGLAS KRTTTVGIIVPDLTNLYFAELSKGIDDIATLYKYNIILSSTENKLLKEDQVIQGLLNKQV DGVIYMGDRLSDEAAAAFERTNTPVVLAGIIDSREQFASVNIDYQKSDKEALTLLLDNGC KEIALILADGEASINKENRIRAYQEFAEENNLTKHIYQDIYSYQDGYDLYGKLEKDGIDA ALVTRNLSAVGIMNAALDDGKKIPDDLELITSNATAISEVVRPSLTNIKQPLYDIGAVAM RMLTKLMANEELDEQHMVMPYELVEKGSTSRK >gi|313656766|gb|GL545251.1| GENE 1814 1682115 - 1683377 1600 420 aa, chain - ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 1 417 50 469 469 360 46.0 3e-99 MKKFLSFAERDGFDVQNFNNYAGRVNYGEGQKRLGVIGHMDVVPAGDGWVTDPFKMLIQD GKIIGRGSADDKGPALAAYYGMLILKEAGFKPKKKIDFVLGTNEETNWVGIDYYLKHEPT PDQVFSPDAEFPIINGEQGIYTLIMNFKEVAGTGSIDLLTFKAGIAENVTPQKAFASIKA DNLADIKTSFEKFLADNNLEGKFEIEGDTANLELVGQGAHASAPQVGRNAATFLAVFLDN LDLAGTAKNYIHFLSSVEHEDFKGEKLGIAHHDDLMGDLSSAPSMFDFKKGEKAELRDNI RYPQGTDPEKMVKQVTEKYGDILEASFNGFEEPHYVPGDDPLVKTLLNVFEKQTGLPGHE VVIGGGTYGRLFEHGVAFGAQPEDAPMVMHQANEYMKVDDLINSISIYAEAIYELTKDAE >gi|313656766|gb|GL545251.1| GENE 1815 1683577 - 1684956 1057 459 aa, chain - ## HITS:1 COG:Ta0634 KEGG:ns NR:ns ## COG: Ta0634 COG0584 # Protein_GI_number: 16081723 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Thermoplasma acidophilum # 23 166 9 149 232 85 31.0 3e-16 MKLKKCLNWGLFLSLIFIINCGFLVVGHRGDPTKYPEETIQSDNSAFDSGADYVELDLHL SKDNIAVVSHDDDLGRMVGTNAIVSQNTFETLSKLQYSNGEHVISLNQLFEYYKDKPNTK FILETKVDHGVNKSNNLEKVIASSIKKYHMENRVMIHSFSAKSLYYFSQLLPNVERIFIV GSLKRINYDTLQYVNAVNVSSDLIKKYPELVKWLHGSDKKIFVWAEMDESPKLWNWLINN NIDGVVTNFPATGFKYKVAKEGSKQVEINKDATYLGFNQAKTIMNPYQPVTNKAKISFLE NVHVLKSVQVGNQLYYQLGGNSFVKADYISFDLNYDNLNPYFNSQIKTPSHTKVKVYLSP NHLTYLHKHLRFNQNYKIYGFSGTSKNLWIKTNLGWVQAREILFTNFPINSFAFSRYQLL DANTRYSNIELLSFTILRDPYTQQFNPNLKSFLNHKALS >gi|313656766|gb|GL545251.1| GENE 1816 1685035 - 1685352 353 105 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0441 NR:ns ## KEGG: LGAS_0441 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 5 105 3 108 108 134 65.0 1e-30 MNQNYQTFDMIEEITRNDGSTYYEITNVEQNGIAELACDRGMIKEVRLLQLNIARTNALK TYEAYINKTYKFPTLTTLTKWEEWDKPKGKVLDAYKLILKSNHIG >gi|313656766|gb|GL545251.1| GENE 1817 1685362 - 1686750 1439 462 aa, chain + ## HITS:1 COG:L181858 KEGG:ns NR:ns ## COG: L181858 COG0737 # Protein_GI_number: 15672159 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 450 1 447 447 293 37.0 3e-79 MEKIRILHTNDLHSHFEKFPKIKRFLNAAQQDGTVDQVYTFDAGDFMDRSNPLSDATNGH ANIELMNQFNYDAVTIGNNEGISNPHEVVEHLFDHAEFPTVLANLREEDESMPSWCTSYK IFTTKKGTRIAVIGLTAPYPMTYGPNHWHVKMLGEVLPNLLATLKGKYDILVGLTHIGVN LDSWIAEKFPEFDLIVGGHTHTLLEHGKWVNKTLIVQTGKWGRYVGDVNLTVDEQHKITE IKACVHETAQMAEHAQDIAESKALFEKGKQLLEKEKIADLPALFENDKEEALAVSLDAIA DFAGTDLAMLSTGLFLTPFKEGILTRFDLQTCLPHPMHVVRTTLKGSDLWRLVMEIEKNR HFLKKFHLIGMSFRGKVFGEVYYRNIQVDMKTRIVYVNGEEIDPEKYYQIATLDHYILIP FFPTLAVVGENEFLFPKVLSQVIGEYLARKYPIKKGEVSGRK >gi|313656766|gb|GL545251.1| GENE 1818 1686737 - 1687270 203 177 aa, chain + ## HITS:1 COG:BH3433 KEGG:ns NR:ns ## COG: BH3433 COG4470 # Protein_GI_number: 15615995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 28 110 4 87 93 72 44.0 4e-13 MEENKQENTPTLHHPLASVARLGDKLIINGRQYSIIANEKDAVDLELLRQKYDPYLDQYD FLVGDISSEHLRLKGFFQDWVRTSIDKKVSTIVDYLTEYCNPGSGYFILQLDEDNTYNEV SQNFKQKKTYNVRFRSKNNYHKKRITHIIFGKEKLRKQNLILKKIMPKPKKVSIMSL >gi|313656766|gb|GL545251.1| GENE 1819 1687451 - 1687747 285 98 aa, chain + ## HITS:1 COG:BS_yutF KEGG:ns NR:ns ## COG: BS_yutF COG0647 # Protein_GI_number: 16080282 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Bacillus subtilis # 2 93 53 143 256 65 35.0 2e-11 MVVDKLAGHGVKTDIQHIYTPCMATSSYILSEKKTAKVYIIGQIGLWNELLSHPEISFDD QNPDYVVVGMDTDLTYHKIRTAVRHIRNGANLLELTAI >gi|313656766|gb|GL545251.1| GENE 1820 1687798 - 1688061 216 87 aa, chain + ## HITS:1 COG:SP1407 KEGG:ns NR:ns ## COG: SP1407 COG0647 # Protein_GI_number: 15901261 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 87 167 254 257 79 43.0 2e-15 MIEVASGQKPLFIGKPSNIIVDKLLERSPYSKQDCLIVGDNYLTDIHAGFNSGVDSLLTL TGVNKREDISGKRQPSYVVDNLDEFEL >gi|313656766|gb|GL545251.1| GENE 1821 1688115 - 1688663 342 182 aa, chain + ## HITS:1 COG:L157321 KEGG:ns NR:ns ## COG: L157321 COG4478 # Protein_GI_number: 15673126 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 3 175 15 190 205 92 39.0 5e-19 MGIASAVTGTILLSWPLLALFVQVQKTYETVNLTLGQVMHNYSQLLWFLLWPFKHELKMD NFASSSNAIEHFTECKYLFELAVIVFILGLIVLRFKPNFDHLSKTWALIFMLIPVVVVPF AVANFDTFFVTFHHMIFHNNNWLFNPLTDPIINVLTEGFFAACFSIFGIIYELYFARFLL NK >gi|313656766|gb|GL545251.1| GENE 1822 1688710 - 1689561 826 283 aa, chain - ## HITS:1 COG:no KEGG:LAF_0297 NR:ns ## KEGG: LAF_0297 # Name: not_defined # Def: two-component response regulator # Organism: L.fermentum # Pathway: Two-component system [PATH:lfe02020] # 1 280 1 278 283 290 52.0 7e-77 MNFYIVDPNKENRDNLRNLIETDYDSIVVGTAGESNRAYSEIIQLHIDILIINYNLDENE AGLELINKLKKVGSRPRFLMICPQLSPQKMQTIYDSSVDLIITSPLNLVEARQMIRLIAS YAMLLNRLNQIYEISSSSIAPYTRPQALHREQTEHISQVLRFLGIAAEAGVEDIMKICNI MCDQNIEFSQINFERDLHITEHDKRIIFQRIRRSLKVGISNLANMCLDYPENDILLDYAN NLFEYRNIHNEMRKLNGESAMPVQISLQHFFNGLLQESYRVKN >gi|313656766|gb|GL545251.1| GENE 1823 1689827 - 1690828 1363 333 aa, chain + ## HITS:1 COG:SA1012 KEGG:ns NR:ns ## COG: SA1012 COG0078 # Protein_GI_number: 15926752 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Staphylococcus aureus N315 # 4 333 3 332 333 502 72.0 1e-142 MAFNLRNRSFLTLADFNTREMEYLLNLSEDLKKAKYAGTEQQHLKGKNIALIFEKASTRT RCAFEVGAKDQGAHVTYLGPSGSHIGYKESVKDTARVLGGMFDGIEYRGFSQRSAETLAK YSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKEYRDIKFAFIGDGQDNVSNALMLGSAVM GMEYHVVTPKELNPDPEVLAKANKIAEKTGAKIVVSNDIKEGVKGMDVIYADVWVSMGEP DEEWERRIKLLKPYQVTKEVMEATENPHAIFEHCLPAFHNLDTAVAKKIKDKYGLSEMEV TDEVFESPQSVVFREAENRMHTIKAVMVATLGD >gi|313656766|gb|GL545251.1| GENE 1824 1690842 - 1691756 1255 304 aa, chain + ## HITS:1 COG:SA1013 KEGG:ns NR:ns ## COG: SA1013 COG0549 # Protein_GI_number: 15926753 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Staphylococcus aureus N315 # 2 302 3 308 310 392 65.0 1e-109 MKVVVALGGNALGKTPEEQLKLVKQTAKSLAGLIKAGHQVVISHGNGPQVGQINLGLSYA AEHGQGASFPFPECGALSQGYIGYHLQQSLKNELPDKDVATLITQILVDENDKAFQNPTK PIGSFYSKEDAERIAKEKGLTFKEDAGRGYRQVIASPLPEKIIELNSIKTLIENGSIVIA GGGGGVPVIKTESGLKGVPAVIDKDRSSALLADNLSCDTLIILTAVDYVYVNYNKPDQKT LKDLSISEAKKCIEEKQFAAGSMLPKVEACLSFVEKHPERKAIITSLAGLDDALAGKLGT VIHN >gi|313656766|gb|GL545251.1| GENE 1825 1691790 - 1693016 991 408 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 5 407 6 409 409 386 50 1e-105 MTSGIHVTSEIGKLKTVMLHRPGKEIENITPDYMERLLFDDIPYLPIAQKEHDYFAQTLR DQGIEVIYFEKLAAEALADEKIRHEFLERMIAESGYIAGATKEALMEYLGSMNVQDMVNK IIEGVRIEDVEIKNPDLQSLSEDTDWPFLMDPMPNAYFTRDPQASIGNGISINRMTFKAR QRESLITEYIIKYNERFAGKVPVWRDRNHATHIEGGDELVLSNHVLAIGISQRTTADAIQ DIAKNLFKDSDYDTIIAIHIPHNHAMMHLDTVFTMINYDQFTVHPAILDEDGKVDNWVLH PGKDGEITIEHHTDIKEVLKKALNKSEIDLIATGNGDKIIAPREQWNDGSNTLAIAPGEV VTYDRNYVSNDLLRKHGILVHEVRSSELSRGRGGPRCMSCPIVREDID >gi|313656766|gb|GL545251.1| GENE 1826 1693072 - 1694490 1533 472 aa, chain + ## HITS:1 COG:L94890 KEGG:ns NR:ns ## COG: L94890 COG0531 # Protein_GI_number: 15674017 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 2 462 4 477 490 332 41.0 7e-91 MEKEKKISRTELIALIVSSCIGTGIFGITSDVSKAAAPGPALLAWLFVGLGILALVLCLN NLSQKRPDLEAGIFSYAGAGFGPLGEFISGWSYWLSAWLGNIAFATMLMSAIGTFIPFFA GGQNVPSILGAIIFCWLLTILVNNGVESASFINFIGTIFKIVPLILFVILMFIFFKGGMF TADFWGQVANNMSKGTVTGSIGEQIKGSLMTMIWVFIGVEGASVMAHRAKTRKEAEQAST IGFILLVLIYVLISILPYGTLTRAQLASAGQPALGYVLKSVVGAWGATIINLGLIVSTII SWLSWTMLPAETTMLAAEDKAMPKVWGKVNAKGAPTTSLYITAILQTIFLFSLLFTQEAY EFAYSLCTAAILFSYLLVGLYQMKFSAGRKEWGQFMIGLLAAAFQLACMFLAGWQEVLLV SISFIPGFIIYYQACHENKRPISLSEKLVMGIILLLSLVAILFIMTGVIKIS >gi|313656766|gb|GL545251.1| GENE 1827 1694610 - 1696037 1331 475 aa, chain + ## HITS:1 COG:L94890 KEGG:ns NR:ns ## COG: L94890 COG0531 # Protein_GI_number: 15674017 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 466 1 479 490 334 42.0 2e-91 MRTIKKRAIGKLELVALIVSSCIGAGIFGITTDISTAAAPGPALLAWLFVGLGILFLVLS LNNLSQKRPELESGVFSYAHEALGPLAEFIAGWTYWLSDWLGNIAIATMMMSALGTFFPI FGNGQTIVAILFAIVVGWVLTYLVNEGVENATFINTIGTFFKVCPLILFLIFVTISFKAG LFTANFWGNAVDNLNNSFKAGNLWTQIRSSLLTMIWVFIGIEGASVMAHRAKTRKEAEYA SIVAFILLFLVYVLISILPYGVMTQAQLAKVGQPALGAILTKIIGWPGAIIINIGLIVST FISWLSWTLLPAESTMLLARDKVLPPFWGKTNKKGAPKDSLILTASLQSIFLFSLLFTKQ AYEFAYSLCVAASLFTYLFVCIYQIKLSRKENNWGQLLIGLLGAVFQLCCMILAGWQQVL LVAVSFIPGFYLYYKARKYYKKAISLPEKLVMIFLLLLGVLAIYLVIVGVIKISG >gi|313656766|gb|GL545251.1| GENE 1828 1696134 - 1697579 1859 481 aa, chain - ## HITS:1 COG:SP1894 KEGG:ns NR:ns ## COG: SP1894 COG0366 # Protein_GI_number: 15901721 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 480 1 480 480 640 65.0 0 MKLQNKVMLITYPDSMGHNLKDLNYVLENYLKGAVGGLHILPFFPSAGDRGFSPMTYDKV DEKFGDWSDIEALSSKYYTMFDFMINHLSKHSEYYKDFVKNKDKSKYKDLYLNWDKFWPE NRPTQADVDLIYKRKDRAPYQTIEFADGTKTNIWNTFGEDQLDLDIRTETTKKFVKDNLV NLANHGASLIRLDAFAYAVKKLDSNDFFVEPEIWDLLKEANDDLKGTDAQLLPEIHEHYK YPFKVSEHGYFVYDFALPMVLLYSLYNGKSKRLADWLRKSPMKQFTTLDTHDGLGVVDAK DILADDEIDMTTNELYKVGANVKRKYSSAEYHNLDIYQINTTYYSALGDDDKKYFISRLV QVFAPGIPQVYYVGLLAGQNDLKLLEETKEGRNINRHYYEVDEVAEEVKRPVVAKLLNLL RFRNEEEAFDLEGSIDITTPSESQIQIIRENKAKTRKAVLNLDLESLEYSVEVNGKTVDF N >gi|313656766|gb|GL545251.1| GENE 1829 1697719 - 1697958 288 79 aa, chain + ## HITS:1 COG:BH3241 KEGG:ns NR:ns ## COG: BH3241 COG1609 # Protein_GI_number: 15615803 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 68 1 70 333 60 47.0 8e-10 MNANIKDVAREAGVSIATVSRFINQNGYVAATTAEKIENAISKLRYHPKKELRKLSNTKA IGIIFPSIKIHCFRNYLLI >gi|313656766|gb|GL545251.1| GENE 1830 1698979 - 1699173 106 64 aa, chain + ## HITS:1 COG:SP1580 KEGG:ns NR:ns ## COG: SP1580 COG3839 # Protein_GI_number: 15901422 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 1 63 313 375 376 83 58.0 9e-17 MVNATVTVSELLGSETQLYTKVGESELVSRVDARDFTKPGSKIQMGFEMNKAHFFDAETE LTID >gi|313656766|gb|GL545251.1| GENE 1831 1700400 - 1701017 517 205 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854578|ref|ZP_04644913.1| ## NR: gi|238854578|ref|ZP_04644913.1| hypothetical protein LACJE0001_0299 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_1404 [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0299 [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] hypothetical protein HMPREF0886_1404 [Lactobacillus jensenii 208-1] # 1 205 1 205 205 385 100.0 1e-106 MKSLNLCLDDVFVKIMEDDTFSIRFHNCRPEDFEITPGENTTIKQIYSSHNLFIKKKYFS LSFKSKDETTSIIELRLPSLEHLNSTCDSGGISLRNLTINTIDIQVDSGLVYLNDIHSEK ASITCDSGTVNANKLIVSDCCDIDVDSGTLFIKNSLTNLCGYDIKCETGISKLFGSVKIR GDKRLFKAGVPMYRLRNDTGLCTIE >gi|313656766|gb|GL545251.1| GENE 1832 1701333 - 1701851 304 172 aa, chain + ## HITS:1 COG:RSc0334 KEGG:ns NR:ns ## COG: RSc0334 COG2110 # Protein_GI_number: 17545053 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Ralstonia solanacearum # 10 168 8 163 171 159 50.0 2e-39 MKEIELSKNLFVVKASVVNFPSDAIVNAANKTLLGGGGVDGAIHQAAGPKLLEACKKLHG CETGQAKITYSFDLATCKYIIHTVGPVFKLSQSPKKELQACYKNSLDLAMKYKCRSVAFS GISTGVYGYPIDQAASVASEVVKQWLEKHNFAIKVIFCCYRDSEYKAYTKLI >gi|313656766|gb|GL545251.1| GENE 1833 1702147 - 1703565 1737 472 aa, chain + ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 2 471 25 491 492 426 50.0 1e-119 MWERFSYYGMRAILIFYMYYAIEKGGLGMSQTLAASIMSIYGSLVYISTIAGGWLADRIW GPRRTTFIGGVLIMLGHICLSLPFGAAALYLSIAFIVMGSGLLNPASSAMVGDLYEENDN RRDAGFSLFVFGINLGAVIAPIAVPWAASGFGLHLFGNETNFHAGFSLAAIGMFFGLLQY WFDGKKYLNEKDFKPNDPLNENEKQKLTKQVLLGVLALIIVLAIMFFMGSLNIDGIINLI TVIAIAMPVIYFVMMLRSDKVTKIEKNRVLAYIPLFIAAAIFWGIEESGSTVLALFAANR TVLHLGAWHFEAANFQVLNPLFIMILTPVFVALWNNWKKQPSAPGKFSGALIFAGLSYVW MAIPAFISPDHRVSPLWLVGSWFLVEIGEMLNSPIGLSVTTKLAPKAFKSQMMSLWYMAD SVGQAVTAQTVKLYTPKTEVQYFLAVGIVSIVFGIILMFLVKRIHNLMEGID >gi|313656766|gb|GL545251.1| GENE 1834 1703624 - 1704514 1010 296 aa, chain - ## HITS:1 COG:DRA0143 KEGG:ns NR:ns ## COG: DRA0143 COG1250 # Protein_GI_number: 15807812 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Deinococcus radiodurans # 3 290 55 346 347 244 44.0 1e-64 MFKNITIAGAGTLGSQIAFQTALCDFNVRIWNPHPDRAKRRLAALRPFYKKDMGLTDEQF DKAMSNILSITNDWEIPFKDCDYLIESVPESLNVKANFYHNVCPHLPEKTIIASNSSTMV PSQLVNYVDRPDKFLHMHFANHIWTNNTAEIVGTDKTKPEVIEEVIEFAKAIKMLPVHLQ KEQHGYIMNALSVPFLNAALELWANGVADPITIDKDWMNSTGCPFGPFMSMDMVGIRTVY AIFAQQARTPEELKVAKTMKDMIDAGHYGIEAGQGFYKYPNPAFQRADFLTSIEAR >gi|313656766|gb|GL545251.1| GENE 1835 1704525 - 1705352 1071 275 aa, chain - ## HITS:1 COG:no KEGG:LSL_0135 NR:ns ## KEGG: LSL_0135 # Name: not_defined # Def: acetoacetate decarboxylase (EC:4.1.1.4) # Organism: L.salivarius # Pathway: Synthesis and degradation of ketone bodies [PATH:lsl00072]; Propanoate metabolism [PATH:lsl00640]; Metabolic pathways [PATH:lsl01100] # 1 275 1 275 277 326 56.0 6e-88 MTSYLVNKEDVVNFLDNPNMKNQDGYMFAYVTSPEVLARLVPKPLTPIAPVIAGYITHMG NPTFAKPYDEAVLYSLVSYGGRMLGAYPFTLFLSGEGAEEAMLAGREGAAIPKKLADKIS YTEKNGSTHVVVTRHGVDLINLTFTPGIPNDPDIAKQLMGGQSKLDTPTDTYSFFFDYKI DQDHDGHNHFINTRLIATKTTGVTHAFTPGNITMELGTSSDDPVSELTVLKPVGGAHYQM TSGKMHETIQLAQVEPDEIAPYLITGRYDQAILGK >gi|313656766|gb|GL545251.1| GENE 1836 1705553 - 1706203 887 216 aa, chain + ## HITS:1 COG:BH3859 KEGG:ns NR:ns ## COG: BH3859 COG0778 # Protein_GI_number: 15616421 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus halodurans # 5 203 4 201 212 152 40.0 4e-37 MTEIEFENNDFSSVMLNRHSVRHFDKSCKIDRSVLTEMVKEATTAPSSCNLQAWHFVVVD TDEGKEKLRKIFMPFNHPQLDTCSAMVVLFGDTDAFKKYRDLWQGMYEEKKITKERLETI LGTFLPIYEKADRTLLTADAMVDASLAAMQFMLDARARGFATNPIAGYDATKMALAMGLD PVRYVPVMAIAIGKPDESKQELVSTRYDVKDVLEFR >gi|313656766|gb|GL545251.1| GENE 1837 1706334 - 1707002 744 222 aa, chain + ## HITS:1 COG:lin0511 KEGG:ns NR:ns ## COG: lin0511 COG0518 # Protein_GI_number: 16799586 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Listeria innocua # 1 220 1 220 226 166 38.0 3e-41 MRVNILQHTPNEGPGAIADWCHDRGHEMYVYHPYQFGKLPEASETDMLVILGGPMSPNDD LFWIKEERVLITQLLASDTPIFGACYGAQQIAKVLGSKIGKAPHKEVGWAPVYLQNHVID GLPEKIVALHWHEEMFEIPTGAHLLYSSDLVKNQGFVFGSHVIGLQFHFEPLADNVREMV VNDGEYALQNNDLKQSPSQILQKQVPSENKQIMYKLLDFITK >gi|313656766|gb|GL545251.1| GENE 1838 1707075 - 1707281 274 68 aa, chain + ## HITS:1 COG:ygjR KEGG:ns NR:ns ## COG: ygjR COG0673 # Protein_GI_number: 16130982 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli K12 # 1 57 7 63 334 64 47.0 3e-11 MLKLGVIGTSWISKQLVEAAQATKKWTVTSVYSRSLERAKEFGEPLGIEGFFDDLESFFQ KVISKWFI >gi|313656766|gb|GL545251.1| GENE 1839 1707317 - 1708054 848 245 aa, chain + ## HITS:1 COG:SP1482 KEGG:ns NR:ns ## COG: SP1482 COG0673 # Protein_GI_number: 15901332 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 2 242 82 321 325 150 35.0 2e-36 MAIEHDKNVIVEKPAFTKPKQYDEIAELLDTHDCHFIEAARHIHTKIFRKLTDEVKKLPQ VDGAYLNVRQYSSRMHTLTPGQKPANVFKPEFAGGALMDIGVYGVYVAVSLFGMPNACSY TPVLHKNEIDVSGNALLKYDNFFVNIDIAKNTMTYQGSEIYGSKEVVGIDSILDMHKVAY YDAEGKKHASRIKVPDNPLYEEMNEFADLFINPDEKLFDYWVLSAQVGEVLNTLRQSAGI KFPDD >gi|313656766|gb|GL545251.1| GENE 1840 1708189 - 1709088 900 299 aa, chain + ## HITS:1 COG:VC0690 KEGG:ns NR:ns ## COG: VC0690 COG2103 # Protein_GI_number: 15640709 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Vibrio cholerae # 5 299 10 304 307 285 50.0 8e-77 MTLDISKLETEQPNPKTRKIDECSTDQILKLINDQDQTIAGVVRKTIPKIGQIVEAATNA IKNGGHVYYVGAGTSGRLGVLDAAECPPTYGVSPELFQGILAGGKEAIFVAKEGVEDSES RGKQALVEHNLAKSDLVIGIAASGRTPYVIGALKYANDVGAGTASIACVTNSALARYAKI AIEAVTGPEVITGSTRMKSGTAQKLILNMISTTTMIKLGKVYENYMVDVSPTNQKLEVRA CNMIKLFTDLDDQAAKDLFIASHKEVKTAIVMYLKKVDYKQAKVLLDKSQGHIRQAIKE >gi|313656766|gb|GL545251.1| GENE 1841 1709093 - 1709980 809 295 aa, chain + ## HITS:1 COG:SP0614 KEGG:ns NR:ns ## COG: SP0614 COG0627 # Protein_GI_number: 15900522 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Streptococcus pneumoniae TIGR4 # 39 281 3 239 259 79 28.0 7e-15 MKKRSSLFILIILMLSLVLTGCTSNKDAAKAKAANQSQVVTTTLYSKHLGIDWNYDVYLP AGYNPKANKKYPVLFMLHGLYGNHRNLLERFNSQQIIDGLVHRTSKKMIVVFVDGFNSFY VNQKGGMQMETAIIKDLIPKINQTYKVATNPNQRAIGGISMGGYGAARLALKYPNQFSKA VMISPSVWYSLAKGNPIRANMHAFTDGKTNWSDQVYNSEFPTKYINNKSRNVKLYIETTS SDTTVPVKDVNHFVNDVKSQGINVKYVKDSGDNHNWTYWTKAAPKAYAWAIKELN >gi|313656766|gb|GL545251.1| GENE 1842 1709995 - 1711425 1195 476 aa, chain + ## HITS:1 COG:BH3574_2 KEGG:ns NR:ns ## COG: BH3574_2 COG1263 # Protein_GI_number: 15616136 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 108 466 5 348 355 238 39.0 2e-62 MSDQELAKKILSLVGGKKNIKNVASCMTRLRLSLNDVSLANIDELKKLDGVLGVVQADTL QIVLGPGKVTKVAEQFAKLVQQKLSQTQADDALDEVKAQAAKNKAENKKKHDKPLQRGLQ HVANVFIPLLPGIIAAGLINGICNVIDFQTGSAFANDWWYATIKTIGWGMFAFLPLLVAM NAAAEFKGSRVLGAIGGIYCLNLGITTFPLASLALNMPFTNSPYVAGVGGILTALLIGFF IAFVEKWVRSWMPDMLDTFLSPLITVIFCGLIAVVFLQPVGSWLTNIIYVVMDFFYNKLS WFGGYILSSTFLGLVSVGLHQALTPIHIMLNDPTGPTKGINYLLPILMMAGGGQVGAGLA LFFKSKNKRFKKLVMSSIPVAVLGVGEPLMYAVTLPLGRTFVTACLGAGFGGVAASLFHL GTVSQGVSGLFGLLIMQPGQQLQFLIALLIAYLGGFIITWFFGVDEGRINELFPEK >gi|313656766|gb|GL545251.1| GENE 1843 1711550 - 1715725 3208 1391 aa, chain + ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 1390 3 1334 1334 479 31.0 1e-134 MKEIKDYIIGLDIGTNSCGYVVTDKQNNILKLKGKTAIGARLFKEGEAAADRRAFRTTRR RLARRRWRLSLLEEIFDEEMNKVDPSFFRRLKESDYSPKDRRKQFNSIVFESSEADKAFY EKYPTIYHLRNALMHDNQKHDLREIFLAVHHIVKYRGNFLREDSVKAFKAAKFTLQGEDG IGPVDKLNDLLKEIYIEAAPELATDNLSKIEDIIKDKKLYKQDKLKQIANLLPKAVDSKD KAKLNKDIAKQVANALMGYMFRLDTLFSFTDVDVKDYKLKFSDANIDESLDALTSLLTDA QIEFVLELQSIYNTIVLNEIVPDGMSLSESMVKKYDDHKKDLKLYKEYIDSLSDQKKAKQ LEAAYALYVNYRKADLLAAKKLFEKKKIGDKKFVDVISNFEVFGKFVSDNLDDSELANKI KARLDLGEFLPKQRTNQNGVIPYQLHQVELTQILEKQGKYYPFLITPNPVESHRNNAPYE ISELVSFRVPYYVGPLIDNQSIKDKQNKNKFAWMVRQKQGQITPWNFEEMVDTTESANQF IKRMTRKDTYLLAEDVLPKSSLIYQKFMILDELNRIKIDGKKLTSKLKHDIFEKLFKKQK SINLDNLKNYLLAEGNIPGLIEGLSDGINFNNSFSTYIDYRNIFGDEIDNPNKQADFEKM IEWSTVFEDRKIFKRKLKEITWLTPEQIKQVSSKRYSGWGRLSKKLLTQITDENGVNILQ RLWNEPETLTEVLANPVIKRKISEANSLFVQINKVENILDDAYTSPQNKKAIRQVIRVVD DIIAAAHGKKPSQIAIEFARSSQNKAKVPDTRKKQLDKIYNKISSEILDSSIKNELKNLK SNKYLSKDKLFLYFKQMGRDAYTGDKLSLDQLQNYDIDHIFPRSFIKDDSLDNRVLTQKP INAKKSDYGIPALEFGNKYVPDLGITVKEMWKLWQENGLISKSKLINLCTNPKKIGSKRA SGFINRQLVETSQVIKLVAIILQAEFPDTEIIEVKALQNTTLRESFHLYKNRSVNDYHHA IDAYLTTIVGNYLYQVYPKLRPYFVYGQFKKFNQEKNIDILKRLKNFNFLRQLIFNTDDN IYISGTKEIVFNKKDIIHKLETAYGYKYMNISRECYQETSSLFNQTLYAHNSSVKNSLIP KKKGLPTEIYGGYSGNKDSFFVLVKIVKKRTNLYRIVGIPTRELAKLNSSNNYNQALNKI VESKLCLKETESFKILIKRLLYGTLIVDNGQKFRIGSFKEKHNVQQLVLQLKSMKYIKFY IDGGQNYFTDVERKKLEKQDRDKCLLYVFDDIMNVVNKRFTLFDMSKYEKDGDSLREKFN CLDFNDKVSILSDLLKAFHANSDRTSITKLKITNLGRHQAGKNGITLTTNAQIIYQSPTG LFERRIKIKDL >gi|313656766|gb|GL545251.1| GENE 1844 1715948 - 1716856 715 302 aa, chain + ## HITS:1 COG:SPy1047 KEGG:ns NR:ns ## COG: SPy1047 COG1518 # Protein_GI_number: 15675042 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 2 279 3 280 289 180 37.0 3e-45 MAWRNVIITQHAKLSYSSNMMQVQTSKGITQIPLSDIALLLVESTQAVITSQLISKLAEQ GCKVIFVDNKYNPITETVNYYAPKCNYQNLLAQLHWDETLKQRLWTEVVWLKMNNQLNVL KNYHLPTEKVEQEINKLEFNDVSNREAVVAREYFQELFGKSFVRQDEGDTINAALNYGYS ILLSSFNRRIVQNGYETYLGIHHSSIANQFNLASDLMEPFRPFVDYWVAGQKLKDFTPDV RYGLVELLSLQIKYNGKAILLANAIDLFTKECLGYLSNDVDKVESVMDFVNEVPNHAIAD NV >gi|313656766|gb|GL545251.1| GENE 1845 1716834 - 1717139 210 101 aa, chain + ## HITS:1 COG:SPy1048 KEGG:ns NR:ns ## COG: SPy1048 COG3512 # Protein_GI_number: 15675043 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 101 6 106 113 81 41.0 4e-16 MRLLIMFDLPTETAQDRKNYRIFRKELINEGFVMIQFSVYVRVCVNRKMAIFLENRVRNF LPEEGLVQSLMLTEKQYNDMHFLIGEAVDDVRNTSDRTVII >gi|313656766|gb|GL545251.1| GENE 1846 1717136 - 1717804 555 222 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1874 NR:ns ## KEGG: Lbuc_1874 # Name: not_defined # Def: CRISPR-associated Csn2 family protein # Organism: L.buchneri # Pathway: not_defined # 1 222 1 222 223 159 38.0 6e-38 MIISYEGHHPIKVSDGKITFIKVANSAVYRDFILSFQGKSEKVKFFDEHYNQLEKNKSID WVGDVLITQDYLNSYQNKIISNLFDTLNENQRNKIFNTWRQLSTDIQDIIFMTDLPIEVG ENLDLKKLFKFDGIHFDDSVLSDPYAIIETVVKIHIECKLNSVVTFANVSHYLTKEQLNN LITFINEVNMPLILIEFSSSDFKVVSGDARVCYIDEDFVDWY >gi|313656766|gb|GL545251.1| GENE 1847 1719522 - 1719791 313 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855162|ref|ZP_04645484.1| ## NR: gi|238855162|ref|ZP_04645484.1| hypothetical protein LACJE0001_0482 [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] transcriptional regulator, AraC family [Lactobacillus jensenii 208-1] hypothetical protein LBJG_00046 [Lactobacillus jensenii 1153] hypothetical protein LACJE0001_0482 [Lactobacillus jensenii 269-3] hypothetical protein LBJG_00046 [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] transcriptional regulator, AraC family [Lactobacillus jensenii 208-1] # 1 89 1 89 89 166 100.0 8e-40 MDEINKIAIEVGAEDMINRPSLVKAQELFHDKTFTMPLIAKYTGISISRLKNLSSGRTPL DQLPEANLLKLAKFSDTCEIFRKLAEKIV >gi|313656766|gb|GL545251.1| GENE 1848 1719869 - 1720150 207 93 aa, chain + ## HITS:1 COG:no KEGG:lhv_0953 NR:ns ## KEGG: lhv_0953 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 3 92 4 93 122 114 63.0 2e-24 MKYFAILHKNKNNQFEVSFPDLAPAAATFGDTLEEAIESAHDSLTGYLLTAEDYNEVVTA PTNNPSIFKIQGSDIIVPVEVNLEFERIKEQNN >gi|313656766|gb|GL545251.1| GENE 1849 1720616 - 1723000 2708 794 aa, chain + ## HITS:1 COG:PAE2423 KEGG:ns NR:ns ## COG: PAE2423 COG0574 # Protein_GI_number: 18313335 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Pyrobaculum aerophilum # 9 777 4 778 811 731 49.0 0 MDQRKNANVLWFDELKREDVDLVGGKSSSLGELTSGTNVPVPYGFATTAAAYRYFMKVTG LNEKINALLKTLKNVDDSDELHKICSQIRKLIVAAKMPADLAKEIGDNYDKLAMKMKVNE PFVAVRSSATAEDLPDASFAGQQDTYLNVHGRDNVIQKVKECYASTFTDRATYYRVKQGF PHEKVALSAAVQMMAFSKASGVMFTVNVATGDYTKVMIEGSWGLGEYIVQGTVTPDNFVV DKASGKISDKTINNKNVELIRLPDGGVEDRKVPEDIATKPCLSDEQVEQLASYAKEIEKH YGCYMDMEWSLDENDKLWLVQARPETVWSQRKKAGKMSKDTSDEKLTTDHKVLVSGLPAS PGIKHGIVHVIENPEDIDKFKDGEVLVTLMTSPDWVPAMKKASAIVTNNGGMTCHAAIVS REMQIPCIVGTASRGAKATAVLKDGQEVTVDAKNGVVYQGVVADMVKKPEKQVSAPAAEY FAPTATGVMMNLGDPDLVDRYKDLPCDGIGLMREEFLWTTYIHQHPLYLIETGHPERVVN ELANGISKVARAMNPRPVVLRFSDFKSGEYRNLKGGDKFEPHESADLLGWRGASRYYDPK YIEAFKLELEAVKKVRNEYGLTNLNVMIPFVRTVDELKKVTEIMAEAGLRRSNDFKVYMM AEIPSNIILADQFNQYIDGYSIGSNDLTMLLLGCDRNNDTVSSLFDERNLAIKRAIRHLI KTAHKDGKTVSICGQAPSEYPEFTEFLVKSGIDYVSVNPDMVKATKRNVARYEQRIILDH ATGLGRADTEDYDW >gi|313656766|gb|GL545251.1| GENE 1850 1723088 - 1723498 333 136 aa, chain + ## HITS:1 COG:SP1549 KEGG:ns NR:ns ## COG: SP1549 COG0242 # Protein_GI_number: 15901392 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 136 1 136 136 162 55.0 2e-40 MIKEIVKDEMFLKRKSLPATKADLPIGQDLRDTLQANKERCVGMAANMIGYSKRVIIVNI GFLNVVMFNSVILERKDPYQVSEGCLSLSGSRNTLRFKEVKVAFLDEKWENQELTLTGFA AEICQHEMDHLEGILI >gi|313656766|gb|GL545251.1| GENE 1851 1723552 - 1725264 917 570 aa, chain + ## HITS:1 COG:no KEGG:LBA1284 NR:ns ## KEGG: LBA1284 # Name: not_defined # Def: cell division protein # Organism: L.acidophilus # Pathway: not_defined # 6 562 6 571 582 328 35.0 4e-88 MKKLKEKYFRELLPYSLIFLVIIATLYVQIAVHSTNMGADNYFHFARFYDIKAQLMTGKF NWFQTNFTFEQTGKVINALYGPLFAYLNGMLLLVAKTWYQYEVITNILLNFIAAIGMYKL AQKVKAPKNVSVILALLYINTGMIPSWIEGMNFSAWGGVFIPYLLIQVVNLLEDKEKPIH VVGLMTCISLIANTHLLSTLLIVLVLAPVVLISFIKTQDKKSFIIDLLKVAVGTIILTAS VWGGLLVIYSQNTIATPYSVNMGMFTIHLSHFQAFRQFIFPSALLLFTGQFIYAVLHCKK QFNNFVVTFIGYCFLLIGSKWFLDWNWIQMKLPIISGIFQFPFRLTSVAYPLILLGLAYT FATNAKQKKSYKEWNYAVIFSIFVMVQACFSTYKVVLDTAQGQNGENSISLVTQMRYSPD YVKKWTQSQTGIFDLYENAQPDYLPLNKKMPSRVVVEKYRAILAVRKKYQHIVNRDGSLT LRWRAKKQKKVTLPLVMYKQSRLIVNGKKKNKINQNDIGAPIIVQKKGENTVNLKFMVPL WFNILLAINILGWIVLIGYYARKKYLIAKK >gi|313656766|gb|GL545251.1| GENE 1852 1725310 - 1725981 315 223 aa, chain - ## HITS:1 COG:no KEGG:LGG_01093 NR:ns ## KEGG: LGG_01093 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 17 223 16 233 233 117 40.0 4e-25 MILNIRRSFYEERKDNKKPIYKRIWFWIVIIVLVGGASSTIGKGNSNSNNSSTTNSSSSS SNSSNKVSLANFNKINLSSSNGDSKAAIRKLFGKKESSTSSSTVENVKTELLTWDSVNNG SFASNITVNFDNDHAVVKSISGLKVNRSKKIALSDFEAISDGQSQEDIKKKFGEPNGYTI TDLANYKSEVWDYTSGIKGSVGANFNITFTDGKVSGKSQYDMK >gi|313656766|gb|GL545251.1| GENE 1853 1726268 - 1727113 327 281 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 [Vibrio cholerae MZO-2] # 1 259 221 471 490 130 33 2e-28 MIEISDKVVKSIIVERPSDSYKGMFGRVLLIGGSLNFGGAIIMATEAAVNSGAGLTSVAT NINNLSSLHSRIPEAMFIDWQESNLVKVIKNSNIIAIGPGLGLDEHAQSLLQLVKRTVKN TQTVILDASALDLLAQDHTLMPTNAETIIMTPHQKEWERVSQIKIPFQEDKDNFSVLKSL FPDNNGILVLKSNHTKIYDCFGNIYQNPLGNPGMATGGMGDTLTGILAGFCGQFSAKIET IASAVYLHSLAGDELYKEHYVVLPTQLSAKIPQLMKKFSLE >gi|313656766|gb|GL545251.1| GENE 1854 1727125 - 1728393 983 422 aa, chain + ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 11 414 9 418 443 231 37.0 2e-60 MKRFFKTIICLLSFLLISSLALTGGTVFASTSINNVNANEAKLNVKAAITIDQKTGEVLY AKNAAKALPIASMSKLITIYLTLQAIKNGKLSWNQKLTPTKNIVKLSNNSDYSNVPLQEK HQYTVKQLYEASLIESANGAVMMLAQAVYGSQENAVNQMRTLLKKWQINGAQIYTTCGLK NGEVGSDAYPGAGKNVENEVPAVGVAKIVDHLLTDYPEVLSTSKLAELDFKDGSTVTKMK NWNWMLKGLSQYDSEYPLDGLKTGTSEKAGACFAGTLKYKGRRLITIVMGAKHVDGTDPS RFVQTKKMLDYVYSNYQLYIYKKGTQLANLKGVKVADGNQKISNLVVKKDSGIWQKTSST GKLTFSKSEIEAPIKKGQLAGYYLFTNNPSIYSSKGTKLAATVRENIDQANIFVRIWHLF FK >gi|313656766|gb|GL545251.1| GENE 1855 1728644 - 1730320 2138 558 aa, chain + ## HITS:1 COG:L0344 KEGG:ns NR:ns ## COG: L0344 COG0018 # Protein_GI_number: 15674020 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Lactococcus lactis # 1 558 1 564 564 632 57.0 0 MDFKQKVVELISSQVELPKEKINSLIERPKNPEMGDYAFPAFILAKTLHKNPAEIAKDIV ANLADDNFEKIQAVGPYVNFSIKKSALISQTLEEVLVKKNNYGNQNLGSGNVAIDMSSPN IAKPMSMGHLRSTVIGNSIAKILTKVGYTPIKINHLGDYGTQFGKLITAYKLWGNEEDVK KDPINSLFHYYVKFHEVAEEKPELEDEGRAWFKKLEGGDPEAVKLWNWFRKVSLQEFNRI YKKLNVEFDSYHGEAFYNDKMDVIVDELRQKDLLVESRGAQVVDLGPDKNPAMILKSDGT SIYTTRDLTAAEYRKKHYDFVQALYVVGNEQSAYFEQLKEVLKKMGHNWADDIHHIPFGL ITQGGKKLSTRKGNVVFLDKVLEDAVELAMKQIETKNPGLPNKEQVANEVGIGAVVFHDL KNDRLDAFDFNLEEVVRFEGETGPYVQYTNARAQSILRKANQIVTIDELDLSDEWAFAVA KDLADFPAVLAKASEKYEPSIIAKFALKLAKHFNKYYANVRILDEDDQLAARLALVKATS IVLTESLHLLGVAAPKEM >gi|313656766|gb|GL545251.1| GENE 1856 1730399 - 1731310 1238 303 aa, chain + ## HITS:1 COG:SPy1889 KEGG:ns NR:ns ## COG: SPy1889 COG0191 # Protein_GI_number: 15675705 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pyogenes M1 GAS # 6 283 5 289 293 308 53.0 1e-83 MAYFDNGNEIFKEARKHHYAVGAYNTNNLEWTRAELRAAEETRTPLLIQVSTGAAKYMGG YKFVKDMVADQMDAMNISVPVILNLDHGDFESAKECIKLGYSSVMFDGHALPTEENLAKT KEIIKLAHERGISVEAEIGKIGENQGGGELASVEDAKAFVAAGVDKLACGIGNIHGVYPA DWKGLNFDRLKEIAEAVPETPLVLHGGSGIPQDQIKKAIQLGIAKININTEFQLAFQEAT REYIMAEKDLDKDHKGYDPRKLLLPGTEAITDKMKEMISWMGTKTIDDELKDASFDRSSL NEE >gi|313656766|gb|GL545251.1| GENE 1857 1731337 - 1732086 787 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 1 243 39 281 285 307 64 1e-90 ENILINGQYRNFNELVYPNDLYSISLTHVENQQHPILPSGHLPQIIYEDKNILVINKPSK QKTHPNLFETNTAMNDVTTYLGYTPYIIHRLDMLTNGLLLFAKNPAVVPILNRQLTTKTM QRNYYATVKLKDIAQKGTISSPIAQDPTDQRKRIIADNGLKAVTHYEVIGRDLSKNTMVL KLTLETGRTHQIRVHLASINLPIIGDPLYNPNFNGEPLALIAYEMTLIKPFTFEKLTVTL PNKKDYPNG >gi|313656766|gb|GL545251.1| GENE 1858 1732074 - 1732199 212 41 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 1 39 1 39 287 86 100 4e-15 MPTYNFINKYPDKSPISVNDMLRKLLIPRKWRHFLRIEKIF >gi|313656766|gb|GL545251.1| GENE 1859 1732283 - 1734340 1995 685 aa, chain + ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 30 685 43 700 714 574 48.0 1e-163 MREYSRNKKANPVWLFIKNINHRFQVIRWLVLALLTVILITSSYYTIKVKTSNIANLKAS LATTTQIYDASGQKAGNLYSQKGTFVELDKISPYMQEAVISTEDRTFYTNPGFSIKGMAR AFVSLLIHHGNIAGGGSTLTQQLAKNAILTQQQTFSRKLEELFFAIEINHVYSKKDILTM YLNNAYFGNGVWGVQDASHKYFGKDASDLTVGEAATLAGMLRNPSYYNPIDHMTNALSRR NVVLGLMVQNKKLSASSCKIAQSESLSLKDNYTQDDGYKYPYFFDAVVDEAISKYGLTEE DVMNKGLKIYTTLNTDYQSAMQDSFDSSANFPASASDGTKVQGASVAVDPKSGAVRAIVG GRGEHVFRGYNRATQMKRQPGSSIKPLAVYTPALQNGYHYDSELSDKLQTFGSNKYEPHN VDNQYSNSIPMYQAIAQSKNVAAVWLLDKIGVAKGVQAMQNFGIKVAKRDQNLALALGGL STGVSPLQMAKAYSAFANNGNLPNNAYFITKIEDASGNVIAQNSNTGSHRIMSQSVAKEM TSMLLGVFTSGTAQSAQPSGYQVAGKTGSTEVSWAYGTKDQWIVGYTPDVVVATWVGFDK TDQNHYMQGISETGITRLYKAEMEGILPYTKGTAFSEKPAQSMANSTGSDSDWLSQAGQN LQNGLNQAGKNIQAWYNNIKGLFGK >gi|313656766|gb|GL545251.1| GENE 1860 1734351 - 1734713 529 120 aa, chain + ## HITS:1 COG:SA1663 KEGG:ns NR:ns ## COG: SA1663 COG3679 # Protein_GI_number: 15927419 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 2 113 3 114 114 58 34.0 3e-09 MINIYDTANKLASEFQETDQFATLKKAIAGVKENETSLALYREMEEFQKGILQKQQNGQE MTDDEKAKYQELDQKIQNDPHVKQVIMAEQGIYMLLDDIQKTIAKPITDLYEDISIHSGK >gi|313656766|gb|GL545251.1| GENE 1861 1734716 - 1735540 647 274 aa, chain + ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 245 4 245 411 179 37.0 7e-45 MKFIHLADAHLDSPFRGLSFLPYKTYEEIKNAAEKSFQRICDIALKQEVDLVLIAGDTFD SNKPSPKSQLFFANQIKRLTDAKIEVVMIFGNHDYMDLNSLFVNSSPYFHLLGNEQKIEK LSLKTKQGFEYNVVGFSYKNNHITENMVNNFPTKDSTYTIGMMHAGIKTTEQSQNIYAPF EMAELRNLNYDYFALGHIHVREILSQKPLIVYPGNIQGRHINELGAKGCYLGVVDEERKE TKISFEKRPNSLAEARPHIIKAGLKDRATKLAYK >gi|313656766|gb|GL545251.1| GENE 1862 1735419 - 1735937 347 172 aa, chain + ## HITS:1 COG:no KEGG:lhv_1665 NR:ns ## KEGG: lhv_1665 # Name: not_defined # Def: phosphoesterase # Organism: L.helveticus # Pathway: not_defined # 14 172 249 406 406 111 40.0 1e-23 MKKEKKLRFLLKNGPILWQKLDLTLSKQVSKTELQNWLISELNKANTELTFFYVVINEAQ YLSEAEVELITDSDFWNNLSQNLAYSSQVVDLRLKSNLQIKLGAKEQKAFSEAKLESTSK SNFVKLAQELIKKDQYLADLCQNDDFQQETVERALVILAQSMKGIDDETNEN >gi|313656766|gb|GL545251.1| GENE 1863 1735918 - 1736226 246 102 aa, chain + ## HITS:1 COG:lin2324 KEGG:ns NR:ns ## COG: lin2324 COG4717 # Protein_GI_number: 16801388 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 80 1 75 908 57 45.0 5e-09 MKLTKIKIIHFGKLSNLTFSLPSKEIDVFFGENEAGKSTTVAFIKQILFGFYLRSNKAPF FEEYEPLAAVSPMGGSLFFELGGSEFELERLWTKGDKSKKAP >gi|313656766|gb|GL545251.1| GENE 1864 1736346 - 1738331 1597 661 aa, chain + ## HITS:1 COG:BS_yhaN KEGG:ns NR:ns ## COG: BS_yhaN COG4717 # Protein_GI_number: 16078056 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 387 652 682 953 963 90 28.0 9e-18 MKLTENDLVEQIYYLGAAKSTEFLSLRDKFDKEAGTLFKKLGKKPEVNQLLNKRTDELAD LSQKQVEFSDYKVLEDDLNKQRTEYLKVQSEYKENNEKLIAAKDLEQKLASYKKYQALKK EFKEVNFSEKDFDLCQSLVVERKNLLASLEESNSQLKSLQESDFDQKQAEKLLLERSSFV EWKNQLENKKYELDKKKKQREQLVALYPFLKKLEQLDANELQRATQKISSKGNSNKSQFM PWIIGLVVMGAFSWMISPILTLLLFILVGYLGIKEAKRKASIREDKANLASFVNKYGFDP NKQNFNLVIEKLNQLKEIELDINNFRSDIENLQSKLQNYTVNLGRYLQQSLSLEDVNEAL NNLELTLRQQNVLVANKASLIANIESLKNKLEVINNQINDFFLNAKVKTWDEYLKLREAY FINQEQENRLNALSENFKEDQEKLHEILLDENKWQQEIADLKKQNHQLEVDLTKLNQNTA EIKVKMENFANSDEIERQKQEIETTNTQLNTATSKYLAYVLASQIITRALDIASGERLPK MLVASQEYFTLLTNGNYQAINFGKTIKVTDRNSKKIEIKYLSRATKEQLYFALKLSFAKQ IQDEINLPILIDDSFVNFDHGRTENIMKLLEQLSQENQIIIFTARKALADALTKHVLTFE R >gi|313656766|gb|GL545251.1| GENE 1865 1738341 - 1739315 932 324 aa, chain + ## HITS:1 COG:SP1980 KEGG:ns NR:ns ## COG: SP1980 COG3481 # Protein_GI_number: 15901803 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 12 312 5 305 308 285 47.0 8e-77 MLKNLMDYNLGEEFDQVLLIKQAQLFHTKKGTTYLMFELADKSGSMRANLWDANEDDLAK YPTGNLVAVNGVIDEYQNRPQIKIFSIRPVTESDGYDLSSFVKKAPEASASMKEEINDYV FKILNPTWNRIVRYLLEKWSNKFYTYPAAKTNHHATQAGLAYHTLSMLRDADAISKNYPQ VNQSLLFAGCILHDLGKVIEFTGPVATRYTMTGNLLGHLVIGDEEIVLAANELKIDIENE DVVLLRHMVISHHGLPEYGAAKRPALLEAELLHRIDDLDASIYEITKALQETKPGEFSSP IFAQDGRKFYRPKNSELGKIDKLN >gi|313656766|gb|GL545251.1| GENE 1866 1739371 - 1740285 1010 304 aa, chain - ## HITS:1 COG:lin2322 KEGG:ns NR:ns ## COG: lin2322 COG0760 # Protein_GI_number: 16801386 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 19 299 16 290 291 137 35.0 2e-32 MNKYWKKAAAIVAVAGIALSATACSSSATLVSYKGGKITQDEYYKELKSSQAGKSTLANM IIYRALKQQYGKKVTQKQVDKEYNAYKKQYGSSFESALEQNGYTTSSFKKNIETNLLTVA ALKDIKKITSKQEQKAWKSYQPKVTVQHILVSKKSTAEDVIKQLKSGTSFATLAKKYSID SATKNKGGKLTAFDSTDTTLDSDFKTAAFKLKNGEYTTTPVKTQSGYEIIKMIKHPSKGK FSDHKKEIDEQIYQSMEQDTTTMQSVIRTVLKKSDISIKDKDLSNVLSSYMSTTATTNSA TSSN >gi|313656766|gb|GL545251.1| GENE 1867 1740480 - 1740833 460 117 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238855145|ref|ZP_04645467.1| ## NR: gi|238855145|ref|ZP_04645467.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] predicted protein [Lactobacillus jensenii SJ-7A-US] putative tropomyosin [Lactobacillus jensenii 208-1] conserved hypothetical protein [Lactobacillus jensenii 1153] conserved hypothetical protein [Lactobacillus jensenii 269-3] conserved hypothetical protein [Lactobacillus jensenii 1153] predicted protein [Lactobacillus jensenii SJ-7A-US] putative tropomyosin [Lactobacillus jensenii 208-1] # 1 117 1 117 117 184 100.0 1e-45 MFKSFSLGFILGAGVGIAAAFLPTDDKDRCLKDDVKDYIDGSINDSATFSDNLATFQDSL NNFNQKAPIATETLSSLQSKTEKFQNIMNEKTDDLKDKISDLNAKIISLNADLKERN >gi|313656766|gb|GL545251.1| GENE 1868 1740864 - 1741295 508 143 aa, chain - ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 6 139 2 135 140 147 53.0 5e-36 MSHLDDNCLFCKIIKGEIPSYKIFENDDVYAFLDISQVNPGHTLMVPKKHIVNLFDYSQE DAAKYLQYIPMIANAIKKFNPKISGMNIAANNGASADQVVMHSHIHFIPRYKGDGFKMAT RNNADQYTPEKYEEIASEIRKEF >gi|313656766|gb|GL545251.1| GENE 1869 1741380 - 1742123 254 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 3 222 5 225 305 102 28 6e-20 MTLKIKNLSGGYHGVAVIKNLNLEIKPGEAVGLIGLNGAGKSTTIKHILGLLRPQKGLIS LNGLELTKNPDKFKQQLAYIPEVPVLYPELTLKEHIDLTILAYELNSDKAWKKADELLKI FRLDNKLDWLPIHFSKGMKQKVMLVCAFITDAELLVIDEPFTGLDPLSAVSLTKLINEAT QDGKMVLMTSHVLSEVQTTISKFAVLNNGCIEVSGSLDEIKRYYGLSSSDSFDKIYEILS REQVQNG >gi|313656766|gb|GL545251.1| GENE 1870 1742116 - 1743294 837 392 aa, chain + ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 4 390 10 404 407 110 26.0 4e-24 MDNLAKRRLAENTKRNLRYLRLVFNDFFVLALIFLFGGFMYWYAQSLPKIPNNLWFYKPI LAMAFTVGLIPGELVTLIKKADLQFLFVKDSEMTVYLQNLKKYSLVLPYIILTLLIGIAF PFAGIKLGMQFWEYLIIAVLLYLLKAIYLQLEYLSLSFQYHYSKVLFYLIAFLGIYASLL DFAASVALLIALIGFTIYIFSQKLESFDWTKAYEKERIRQNRVFIFYSMFTDVSEKAIVI KRRKYLDFWLNFQKAKNANQFLLQRNLLRNPDYISLLVRMTIFAILLSFMVTDMNMVLIL SALVVFLTAYQLLPIKRLYQRHIMYHVMPIKRDNIREVKSVVTWALLLQVIMIVIFWIVI FKISVLLNAAILLIFMLLIANIYLPLKLKKKN >gi|313656766|gb|GL545251.1| GENE 1871 1743306 - 1743959 794 217 aa, chain + ## HITS:1 COG:L156302 KEGG:ns NR:ns ## COG: L156302 COG0220 # Protein_GI_number: 15672731 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Lactococcus lactis # 1 216 1 213 217 205 47.0 7e-53 MRLRNKPWAVKLVDEHPESVLQDPNPEVKIDWENRFADFSRPLEVEIGSGKGQFITTLAQ QHPDRNYVAIELQTTAAGIILRTKLEKKLDNLQILRGDAISIASFFAENSVDVLYLNFSD PWPKTRHEKRRLTYKDFLKNYQTILKPTGHLEFKTDNSGLFSYSLMSLNNFGMVFDFVSV DLHHENEEIVTKNVETEYEHKFASKGNPIYALHAHFK >gi|313656766|gb|GL545251.1| GENE 1872 1744021 - 1744341 471 106 aa, chain + ## HITS:1 COG:lin1650 KEGG:ns NR:ns ## COG: lin1650 COG0526 # Protein_GI_number: 16800718 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 105 1 103 103 107 47.0 6e-24 MKKIDALTKEKLIELTKNGRTVLEFSADWCPDCRFLDPFMPEIEKDFADSEFYQINRDNS IEVAKDLAILGIPSFVVYQDGQEIGRLVNKDRKTKDEVESFLRSLD >gi|313656766|gb|GL545251.1| GENE 1873 1744360 - 1744923 642 187 aa, chain + ## HITS:1 COG:L195751 KEGG:ns NR:ns ## COG: L195751 COG0073 # Protein_GI_number: 15672372 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Lactococcus lactis # 1 182 1 183 208 155 45.0 3e-38 MIASTNKHAYPNTLIVILGQDKGRSHYEEKDQVTRVLDEDNNVIGFNFFDVDQYLNYDAL ANGEVELTAEDLTKLNQILKDNGFADQLVPSKPTLVYGYVKTCEAHPDSDHLHVTTVDVG SESDVKIVCGAPNIEAGQKVVVALPGTLMPNGAQIWPGELRGVPSYGMICSARELGLPHA PQKEELW >gi|313656766|gb|GL545251.1| GENE 1874 1745194 - 1745721 190 175 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1300 NR:ns ## KEGG: LGAS_1300 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 3 169 5 171 189 68 24.0 9e-11 MNLKHLEEVLYKNLSTERIKNFQVKTLCEVAKVSRGSFYYHFKGIEDFYEAIFIKDLNRI LLSNRYDNFSSRMLQLLKALKDDQTFYINLVHLGNTKAFGKNVEKALFEILRYYARSRGC YSEPTLIRISKAMYHTIYYWIMHDCEDQIHQIHTCLFLQFQELDRQKELHDIIGI