Prediction of potential genes in microbial genomes Time: Wed May 25 16:55:31 2011 Seq name: gi|297149550|gb|ACGQ02000001.1| Lactobacillus jensenii JV-V16 Contig000001, whole genome shotgun sequence Length of sequence - 767887 bp Number of predicted genes - 708, with homology - 700 Number of transcription units - 342, operones - 167 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 1 - 605 99.0 # EU559597 [D:1..1563] # 16S ribosomal RNA # Lactobacillus jensenii # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + Prom 951 - 1010 7.7 1 1 Op 1 . + CDS 1166 - 2110 223 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 2 1 Op 2 . + CDS 2120 - 2641 581 ## COG1267 Phosphatidylglycerophosphatase A and related proteins 3 1 Op 3 . + CDS 2644 - 3294 522 ## COG0586 Uncharacterized membrane-associated protein - Term 3271 - 3300 1.4 4 2 Op 1 . - CDS 3310 - 4545 1861 ## COG0112 Glycine/serine hydroxymethyltransferase 5 2 Op 2 7/0.000 - CDS 4597 - 5976 1258 ## COG3428 Predicted membrane protein 6 2 Op 3 . - CDS 5969 - 6454 453 ## COG3402 Uncharacterized conserved protein - Term 6465 - 6508 6.0 7 3 Op 1 . - CDS 6530 - 9049 2174 ## COG0178 Excinuclease ATPase subunit - Prom 9070 - 9129 5.6 8 3 Op 2 1/0.156 - CDS 9132 - 9797 567 ## COG0778 Nitroreductase 9 3 Op 3 1/0.156 - CDS 9872 - 10288 454 ## COG1396 Predicted transcriptional regulators - Prom 10374 - 10433 4.9 - Term 10397 - 10432 1.0 10 4 Tu 1 . - CDS 10455 - 11915 1256 ## COG0531 Amino acid transporters - Prom 12005 - 12064 10.0 + Prom 12016 - 12075 8.8 11 5 Tu 1 . + CDS 12187 - 13365 443 ## COG3328 Transposase and inactivated derivatives - Term 13509 - 13563 4.4 12 6 Tu 1 . - CDS 13567 - 13977 278 ## COG1396 Predicted transcriptional regulators - Prom 14106 - 14165 8.3 + Prom 13936 - 13995 3.8 13 7 Op 1 . + CDS 14124 - 14495 228 ## LCK_00431 HMG-I and HMG-Y, DNA-binding: regulatory protein, TetR 14 7 Op 2 . + CDS 14498 - 14842 269 ## LCK_00432 hypothetical protein + Term 14843 - 14886 4.4 - Term 14828 - 14877 8.4 15 8 Op 1 . - CDS 14879 - 15817 958 ## COG0276 Protoheme ferro-lyase (ferrochelatase) 16 8 Op 2 . - CDS 15830 - 17179 1225 ## COG0534 Na+-driven multidrug efflux pump - Prom 17223 - 17282 5.0 17 9 Tu 1 . - CDS 17288 - 17437 111 ## GALLO_1419 hypothetical protein - Prom 17616 - 17675 7.2 - Term 17608 - 17646 5.5 18 10 Tu 1 . - CDS 17692 - 18030 209 ## gi|297204991|ref|ZP_06922387.1| acetyl-coA carboxylase carboxyl transferase subunit beta 19 11 Tu 1 . - CDS 18718 - 27219 12861 ## LJ0621 hypothetical protein - Prom 27261 - 27320 9.9 + Prom 27407 - 27466 10.8 20 12 Op 1 . + CDS 27542 - 28411 1059 ## LAR_1469 hypothetical protein 21 12 Op 2 . + CDS 28404 - 28562 94 ## gi|256852128|ref|ZP_05557515.1| predicted protein 22 12 Op 3 . + CDS 28555 - 29865 1108 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 23 12 Op 4 . + CDS 29877 - 31010 910 ## LAR_1467 endoglucanase 24 12 Op 5 . + CDS 31088 - 31216 154 ## 25 12 Op 6 . + CDS 31271 - 32596 1160 ## COG0531 Amino acid transporters + Term 32598 - 32637 8.6 - Term 32581 - 32630 15.1 26 13 Op 1 . - CDS 32631 - 32744 62 ## - Prom 32782 - 32841 2.4 27 13 Op 2 . - CDS 32846 - 33352 507 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 28 13 Op 3 . - CDS 33366 - 34394 963 ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF - Prom 34424 - 34483 9.1 - Term 34454 - 34490 -0.5 29 14 Op 1 1/0.156 - CDS 34498 - 34926 507 ## COG1959 Predicted transcriptional regulator 30 14 Op 2 . - CDS 34952 - 35803 1239 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 35844 - 35903 10.4 - Term 35931 - 35971 -0.7 31 15 Op 1 9/0.000 - CDS 35978 - 37024 736 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 32 15 Op 2 20/0.000 - CDS 37021 - 37575 545 ## PROTEIN SUPPORTED gi|227894610|ref|ZP_04012415.1| ribosomal protein ala-acetyltransferase 33 15 Op 3 . - CDS 37559 - 38287 879 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 34 15 Op 4 . - CDS 38287 - 38826 636 ## LBA0387 hypothetical protein 35 15 Op 5 . - CDS 38826 - 38966 110 ## gi|256852117|ref|ZP_05557504.1| conserved hypothetical protein 36 15 Op 6 . - CDS 38966 - 39505 636 ## LBA0387 hypothetical protein 37 15 Op 7 . - CDS 39505 - 40083 516 ## LBA0387 hypothetical protein 38 15 Op 8 . - CDS 40076 - 40804 807 ## COG3884 Acyl-ACP thioesterase 39 15 Op 9 2/0.104 - CDS 40807 - 41661 759 ## COG0313 Predicted methyltransferases 40 15 Op 10 1/0.156 - CDS 41645 - 42001 304 ## COG4467 Uncharacterized protein conserved in bacteria 41 15 Op 11 2/0.104 - CDS 42019 - 42867 693 ## COG0470 ATPase involved in DNA replication 42 15 Op 12 4/0.042 - CDS 42867 - 43187 532 ## COG3870 Uncharacterized protein conserved in bacteria 43 15 Op 13 . - CDS 43187 - 43834 832 ## COG0125 Thymidylate kinase - Prom 43854 - 43913 9.9 - Term 43891 - 43921 2.7 44 16 Op 1 . - CDS 43925 - 44164 298 ## LCRIS_00381 hypothetical protein 45 16 Op 2 23/0.000 - CDS 44161 - 44760 514 ## COG0353 Recombinational DNA repair protein (RecF pathway) 46 16 Op 3 30/0.000 - CDS 44760 - 45089 523 ## COG0718 Uncharacterized protein conserved in bacteria 47 16 Op 4 2/0.104 - CDS 45130 - 46911 1804 ## COG2812 DNA polymerase III, gamma/tau subunits - Term 46923 - 46957 4.1 48 17 Op 1 . - CDS 47070 - 47594 501 ## COG0590 Cytosine/adenosine deaminases 49 17 Op 2 3/0.052 - CDS 47604 - 48203 660 ## COG2813 16S RNA G1207 methylase RsmC - Prom 48229 - 48288 8.7 - Term 48229 - 48288 16.0 50 18 Op 1 47/0.000 - CDS 48300 - 48662 572 ## PROTEIN SUPPORTED gi|227525592|ref|ZP_03955641.1| ribosomal protein L7/L12 - Term 48680 - 48727 -0.6 51 18 Op 2 2/0.104 - CDS 48728 - 49246 839 ## PROTEIN SUPPORTED gi|227525593|ref|ZP_03955642.1| 50S ribosomal protein L10 - Prom 49266 - 49325 1.5 - Term 49267 - 49301 4.0 52 19 Tu 1 . - CDS 49428 - 50348 263 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase - Prom 50369 - 50428 5.6 - Term 50366 - 50396 0.3 53 20 Tu 1 . - CDS 50450 - 51466 884 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 51509 - 51568 8.0 - Term 51586 - 51623 6.4 54 21 Op 1 55/0.000 - CDS 51643 - 52335 1162 ## PROTEIN SUPPORTED gi|227525596|ref|ZP_03955645.1| 50S ribosomal protein L1 - Prom 52364 - 52423 2.1 55 21 Op 2 45/0.000 - CDS 52432 - 52857 693 ## PROTEIN SUPPORTED gi|227525597|ref|ZP_03955646.1| 50S ribosomal protein L11 - Prom 52927 - 52986 4.2 - Term 52883 - 52915 2.5 56 21 Op 3 . - CDS 52988 - 53545 801 ## COG0250 Transcription antiterminator - Prom 53581 - 53640 3.8 - Term 53563 - 53605 2.2 57 22 Op 1 . - CDS 53647 - 53817 238 ## Ldb1668 preprotein translocase subunit SecE 58 22 Op 2 . - CDS 53820 - 53969 257 ## PROTEIN SUPPORTED gi|227525600|ref|ZP_03955649.1| ribosomal protein L33 - Prom 54015 - 54074 10.2 - Term 54019 - 54067 4.1 59 23 Op 1 . - CDS 54117 - 54335 262 ## LGAS_0346 hypothetical protein 60 23 Op 2 . - CDS 54392 - 54943 517 ## LCRIS_00352 DNA-directed RNA polymerase sigma factor, sigma H - Prom 54967 - 55026 8.3 61 24 Op 1 7/0.000 - CDS 55047 - 55802 560 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 62 24 Op 2 8/0.000 - CDS 55789 - 56232 303 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 63 24 Op 3 . - CDS 56225 - 57646 1618 ## COG0215 Cysteinyl-tRNA synthetase - Prom 57667 - 57726 6.7 - Term 57693 - 57734 -0.8 64 24 Op 4 . - CDS 57741 - 58046 274 ## gi|256852088|ref|ZP_05557475.1| predicted protein - Prom 58077 - 58136 9.6 65 25 Tu 1 . - CDS 58167 - 58514 208 ## gi|256852087|ref|ZP_05557474.1| predicted protein + Prom 58342 - 58401 4.3 66 26 Tu 1 . + CDS 58480 - 58671 111 ## - Term 58588 - 58624 -0.4 67 27 Tu 1 . - CDS 58632 - 59060 489 ## gi|256852086|ref|ZP_05557473.1| predicted protein - Prom 59086 - 59145 4.3 - Term 59147 - 59192 8.2 68 28 Op 1 . - CDS 59193 - 60692 2028 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 69 28 Op 2 1/0.156 - CDS 60767 - 62143 1275 ## COG1066 Predicted ATP-dependent serine protease 70 28 Op 3 . - CDS 62157 - 62696 578 ## COG0756 dUTPase - Prom 62738 - 62797 8.0 + Prom 62690 - 62749 8.6 71 29 Op 1 . + CDS 62896 - 63090 261 ## gi|256852082|ref|ZP_05557469.1| predicted protein 72 29 Op 2 . + CDS 63157 - 64506 1878 ## COG3579 Aminopeptidase C + Term 64527 - 64561 2.0 - Term 64517 - 64545 -0.0 73 30 Op 1 . - CDS 64555 - 65490 842 ## COG4639 Predicted kinase - Prom 65510 - 65569 4.1 74 30 Op 2 . - CDS 65576 - 66253 724 ## COG0588 Phosphoglycerate mutase 1 75 30 Op 3 . - CDS 66264 - 66431 185 ## gi|282934870|ref|ZP_06340102.1| conserved hypothetical protein 76 30 Op 4 . - CDS 66433 - 67323 824 ## COG1230 Co/Zn/Cd efflux system component 77 30 Op 5 . - CDS 67332 - 68012 857 ## COG0406 Fructose-2,6-bisphosphatase 78 30 Op 6 . - CDS 68077 - 68829 638 ## COG0730 Predicted permeases - Prom 68889 - 68948 7.1 + Prom 68765 - 68824 6.2 79 31 Op 1 1/0.156 + CDS 68921 - 69493 714 ## COG0693 Putative intracellular protease/amidase 80 31 Op 2 1/0.156 + CDS 69569 - 70105 706 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 70119 - 70156 5.3 + Prom 70128 - 70187 5.7 81 32 Tu 1 . + CDS 70238 - 71464 1444 ## COG2814 Arabinose efflux permease + Term 71469 - 71507 7.1 - Term 71455 - 71493 7.1 82 33 Tu 1 . - CDS 71497 - 73080 947 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 73103 - 73162 4.6 - Term 73193 - 73237 2.4 83 34 Tu 1 . - CDS 73249 - 74058 563 ## LJ1729 hypothetical protein - Prom 74145 - 74204 4.9 - Term 74212 - 74243 2.1 84 35 Op 1 59/0.000 - CDS 74273 - 74668 668 ## PROTEIN SUPPORTED gi|227525625|ref|ZP_03955674.1| 30S ribosomal protein S9 85 35 Op 2 7/0.000 - CDS 74685 - 75155 799 ## PROTEIN SUPPORTED gi|227525626|ref|ZP_03955675.1| 50S ribosomal protein L13 86 35 Op 3 8/0.000 - CDS 75225 - 76013 929 ## COG0101 Pseudouridylate synthase 87 35 Op 4 34/0.000 - CDS 76013 - 76810 638 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 88 35 Op 5 15/0.000 - CDS 76803 - 77666 994 ## COG1122 ABC-type cobalt transport system, ATPase component 89 35 Op 6 6/0.000 - CDS 77642 - 78493 724 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 78513 - 78572 8.0 - Term 78532 - 78567 0.3 90 35 Op 7 50/0.000 - CDS 78663 - 79046 620 ## PROTEIN SUPPORTED gi|227525631|ref|ZP_03955680.1| 50S ribosomal protein L17 91 35 Op 8 32/0.000 - CDS 79074 - 80015 1230 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 92 35 Op 9 48/0.000 - CDS 80061 - 80450 652 ## PROTEIN SUPPORTED gi|227525633|ref|ZP_03955682.1| ribosomal protein S11 93 35 Op 10 . - CDS 80480 - 80830 586 ## PROTEIN SUPPORTED gi|227525634|ref|ZP_03955683.1| 30S ribosomal protein S13 94 35 Op 11 . - CDS 80857 - 80973 211 ## PROTEIN SUPPORTED gi|227525635|ref|ZP_03955684.1| 50S ribosomal protein L36 95 35 Op 12 6/0.000 - CDS 80988 - 81209 299 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 96 35 Op 13 28/0.000 - CDS 81281 - 81934 694 ## COG0563 Adenylate kinase and related kinases 97 35 Op 14 53/0.000 - CDS 81948 - 83240 1473 ## COG0201 Preprotein translocase subunit SecY 98 35 Op 15 48/0.000 - CDS 83240 - 83680 734 ## PROTEIN SUPPORTED gi|227525639|ref|ZP_03955688.1| 50S ribosomal protein L15 99 35 Op 16 50/0.000 - CDS 83703 - 83888 294 ## PROTEIN SUPPORTED gi|227525640|ref|ZP_03955689.1| 50S ribosomal protein L30 100 35 Op 17 56/0.000 - CDS 83899 - 84414 848 ## PROTEIN SUPPORTED gi|227525641|ref|ZP_03955690.1| 30S ribosomal protein S5 101 35 Op 18 46/0.000 - CDS 84432 - 84791 580 ## PROTEIN SUPPORTED gi|227525642|ref|ZP_03955691.1| 50S ribosomal protein L18 102 35 Op 19 55/0.000 - CDS 84814 - 85344 892 ## PROTEIN SUPPORTED gi|227525643|ref|ZP_03955692.1| ribosomal protein L6 103 35 Op 20 50/0.000 - CDS 85369 - 85767 667 ## PROTEIN SUPPORTED gi|227525644|ref|ZP_03955693.1| ribosomal protein S8 104 35 Op 21 50/0.000 - CDS 85791 - 85976 335 ## PROTEIN SUPPORTED gi|227525645|ref|ZP_03955694.1| 30S ribosomal protein S14 105 35 Op 22 48/0.000 - CDS 85991 - 86533 897 ## PROTEIN SUPPORTED gi|227525646|ref|ZP_03955695.1| ribosomal protein L5 106 35 Op 23 57/0.000 - CDS 86548 - 86862 526 ## PROTEIN SUPPORTED gi|227525647|ref|ZP_03955696.1| ribosomal protein L24 107 35 Op 24 50/0.000 - CDS 86884 - 87252 600 ## PROTEIN SUPPORTED gi|227525648|ref|ZP_03955697.1| ribosomal protein L14 108 35 Op 25 50/0.000 - CDS 87285 - 87551 450 ## PROTEIN SUPPORTED gi|227525649|ref|ZP_03955698.1| 30S ribosomal protein S17 109 35 Op 26 50/0.000 - CDS 87574 - 87771 316 ## PROTEIN SUPPORTED gi|227525650|ref|ZP_03955699.1| ribosomal protein L29 110 35 Op 27 50/0.000 - CDS 87761 - 88201 754 ## PROTEIN SUPPORTED gi|227525651|ref|ZP_03955700.1| 50S ribosomal protein L16 111 35 Op 28 61/0.000 - CDS 88201 - 88875 1146 ## PROTEIN SUPPORTED gi|227525652|ref|ZP_03955701.1| ribosomal protein S3 112 35 Op 29 59/0.000 - CDS 88889 - 89242 565 ## PROTEIN SUPPORTED gi|227525653|ref|ZP_03955702.1| 50S ribosomal protein L22 113 35 Op 30 60/0.000 - CDS 89266 - 89541 473 ## PROTEIN SUPPORTED gi|227525654|ref|ZP_03955703.1| 30S ribosomal protein S19 114 35 Op 31 61/0.000 - CDS 89563 - 90399 1453 ## PROTEIN SUPPORTED gi|227525655|ref|ZP_03955704.1| 50S ribosomal protein L2 115 35 Op 32 61/0.000 - CDS 90415 - 90711 490 ## PROTEIN SUPPORTED gi|227525656|ref|ZP_03955705.1| ribosomal protein L23 116 35 Op 33 58/0.000 - CDS 90711 - 91328 1033 ## PROTEIN SUPPORTED gi|227525657|ref|ZP_03955706.1| 50S ribosomal protein L4 117 35 Op 34 40/0.000 - CDS 91343 - 91972 1067 ## PROTEIN SUPPORTED gi|227525658|ref|ZP_03955707.1| 50S ribosomal protein L3 118 35 Op 35 . - CDS 92000 - 92434 731 ## PROTEIN SUPPORTED gi|227525659|ref|ZP_03955708.1| 30S ribosomal protein S10 - Prom 92537 - 92596 10.2 - Term 92569 - 92610 6.7 119 36 Op 1 1/0.156 - CDS 92615 - 93088 345 ## COG1288 Predicted membrane protein 120 36 Op 2 . - CDS 93090 - 94145 1035 ## COG1288 Predicted membrane protein - Prom 94182 - 94241 10.1 - Term 94234 - 94283 3.1 121 37 Op 1 51/0.000 - CDS 94295 - 96385 2990 ## COG0480 Translation elongation factors (GTPases) 122 37 Op 2 56/0.000 - CDS 96422 - 96892 794 ## PROTEIN SUPPORTED gi|227525664|ref|ZP_03955713.1| ribosomal protein S7 123 37 Op 3 . - CDS 96907 - 97314 699 ## PROTEIN SUPPORTED gi|227525665|ref|ZP_03955714.1| 30S ribosomal protein S12 - Prom 97443 - 97502 13.3 + Prom 97367 - 97426 5.4 124 38 Tu 1 . + CDS 97497 - 98180 420 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases + Term 98199 - 98238 8.6 - Term 98183 - 98231 11.6 125 39 Op 1 58/0.000 - CDS 98250 - 101918 5164 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 126 39 Op 2 . - CDS 101930 - 105568 4556 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit - Prom 105589 - 105648 6.9 - Term 105631 - 105675 7.8 127 40 Op 1 . - CDS 105787 - 108270 2094 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 108296 - 108355 6.3 128 40 Op 2 . - CDS 108368 - 109000 605 ## LBA1353 hypothetical protein 129 40 Op 3 . - CDS 109002 - 109214 289 ## LBA1353 hypothetical protein - Prom 109280 - 109339 12.3 - TRNA 109369 - 109443 79.8 # Gly GCC 0 0 - TRNA 109503 - 109576 75.8 # Pro CGG 0 0 - TRNA 109619 - 109693 87.5 # Gly GCC 0 0 - Term 109577 - 109612 4.4 130 41 Op 1 . - CDS 109766 - 110257 326 ## gi|256852025|ref|ZP_05557412.1| predicted protein 131 41 Op 2 . - CDS 110250 - 110849 732 ## COG1131 ABC-type multidrug transport system, ATPase component 132 41 Op 3 . - CDS 110862 - 111461 304 ## LEGAS_0019 hypothetical protein 133 41 Op 4 . - CDS 111461 - 112276 524 ## LEGAS_0018 integral membrane protein - Term 112284 - 112325 5.1 134 41 Op 5 . - CDS 112335 - 112751 601 ## gi|297205107|ref|ZP_06922503.1| choline binding protein - Prom 112793 - 112852 8.2 + Prom 112917 - 112976 6.9 135 42 Tu 1 . + CDS 113017 - 113895 505 ## LBA1934 transcriptional regulator + Term 113916 - 113965 10.1 - Term 113900 - 113960 3.5 136 43 Op 1 3/0.052 - CDS 113961 - 115481 2314 ## COG1190 Lysyl-tRNA synthetase (class II) 137 43 Op 2 2/0.104 - CDS 115503 - 116531 471 ## PROTEIN SUPPORTED gi|145637283|ref|ZP_01792944.1| ribosomal protein L11 methyltransferase - Prom 116555 - 116614 6.0 - Term 116560 - 116604 6.2 138 44 Op 1 1/0.156 - CDS 116619 - 117500 1054 ## COG1281 Disulfide bond chaperones of the HSP33 family - Term 117507 - 117536 0.5 139 44 Op 2 14/0.000 - CDS 117541 - 119676 1200 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 140 44 Op 3 . - CDS 119760 - 120998 808 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 141 44 Op 4 . - CDS 121018 - 121368 271 ## PROTEIN SUPPORTED gi|161506858|ref|YP_001576812.1| putative ribosomal protein 142 44 Op 5 . - CDS 121365 - 121736 470 ## LGAS_0273 septum formation initiator 143 44 Op 6 3/0.052 - CDS 121803 - 122045 374 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 144 44 Op 7 7/0.000 - CDS 122057 - 125542 3655 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 145 44 Op 8 . - CDS 125545 - 126102 541 ## COG0193 Peptidyl-tRNA hydrolase - Prom 126204 - 126263 10.2 + Prom 126053 - 126112 8.1 146 45 Tu 1 . + CDS 126272 - 126958 771 ## COG0517 FOG: CBS domain + Term 126965 - 127015 14.2 - Term 126960 - 126995 4.0 147 46 Tu 1 . - CDS 127001 - 128128 1146 ## COG0787 Alanine racemase - Prom 128173 - 128232 4.1 - Term 128502 - 128539 4.0 148 47 Op 1 2/0.104 - CDS 128549 - 130003 1719 ## COG0513 Superfamily II DNA and RNA helicases 149 47 Op 2 . - CDS 130014 - 131381 1592 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase - Prom 131407 - 131466 2.7 - Term 131429 - 131460 2.1 150 47 Op 3 . - CDS 131479 - 131736 442 ## PROTEIN SUPPORTED gi|227525693|ref|ZP_03955742.1| 50S ribosomal protein L31 type B - Prom 131791 - 131850 6.0 151 48 Tu 1 . - CDS 131863 - 133764 2585 ## LVIS_0239 periplasmic protease - Prom 133830 - 133889 6.6 152 49 Op 1 . - CDS 133896 - 134411 398 ## gi|256852002|ref|ZP_05557389.1| predicted protein 153 49 Op 2 . - CDS 134383 - 134832 502 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Term 134860 - 134903 6.1 154 50 Op 1 9/0.000 - CDS 134906 - 136141 1458 ## COG1668 ABC-type Na+ efflux pump, permease component 155 50 Op 2 . - CDS 136138 - 137043 255 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 137100 - 137159 6.3 - Term 137185 - 137224 6.1 156 51 Tu 1 . - CDS 137239 - 137367 73 ## - Prom 137512 - 137571 9.8 + Prom 137365 - 137424 8.0 157 52 Tu 1 . + CDS 137503 - 138612 1029 ## LAF_1481 hypothetical protein + Term 138696 - 138759 6.1 - Term 138687 - 138743 8.6 158 53 Tu 1 . - CDS 138748 - 141060 3013 ## LJ0913 levansucrase precursor - Prom 141149 - 141208 10.2 + Prom 141749 - 141808 7.3 159 54 Op 1 . + CDS 141828 - 143588 1046 ## LCABL_28670 hypothetical protein 160 54 Op 2 . + CDS 143627 - 144583 1401 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 161 55 Tu 1 . - CDS 144690 - 147224 2887 ## GALLO_0271 putative transposon related peptidoglycan linked protein (LPXTG motif) - Prom 147287 - 147346 4.8 - Term 147286 - 147337 13.2 162 56 Tu 1 . - CDS 147358 - 147768 442 ## LJ1575 hypothetical protein - Prom 147824 - 147883 8.7 + Prom 147841 - 147900 11.7 163 57 Op 1 . + CDS 147959 - 149434 2019 ## COG0477 Permeases of the major facilitator superfamily 164 57 Op 2 . + CDS 149434 - 149979 745 ## LGAS_0724 hypothetical protein + Term 149997 - 150033 5.2 165 58 Tu 1 . - CDS 150026 - 150487 452 ## gi|256851988|ref|ZP_05557375.1| predicted protein - Prom 150659 - 150718 7.0 166 59 Op 1 . - CDS 150811 - 151419 462 ## COG1376 Uncharacterized protein conserved in bacteria 167 59 Op 2 . - CDS 151486 - 152235 624 ## COG1085 Galactose-1-phosphate uridylyltransferase - Prom 152274 - 152333 9.4 - Term 152305 - 152338 5.1 168 60 Tu 1 . - CDS 152346 - 153896 2032 ## COG0519 GMP synthase, PP-ATPase domain/subunit - Prom 154037 - 154096 7.8 + Prom 154021 - 154080 6.9 169 61 Op 1 7/0.000 + CDS 154191 - 154811 540 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 170 61 Op 2 . + CDS 154814 - 156097 408 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 156117 - 156149 2.5 + Prom 156099 - 156158 5.5 171 62 Tu 1 . + CDS 156204 - 157628 1708 ## COG4690 Dipeptidase - Term 157633 - 157680 10.3 172 63 Tu 1 . - CDS 157695 - 158960 1545 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 158990 - 159049 5.3 - Term 159009 - 159062 7.1 173 64 Tu 1 . - CDS 159081 - 160700 2007 ## COG0504 CTP synthase (UTP-ammonia lyase) - Prom 160720 - 160779 4.8 - Term 160733 - 160760 0.5 174 65 Op 1 . - CDS 160843 - 161391 794 ## COG3343 DNA-directed RNA polymerase, delta subunit 175 65 Op 2 . - CDS 161439 - 161846 302 ## lhv_0245 hypothetical protein - Prom 161906 - 161965 8.2 176 66 Tu 1 . + CDS 161962 - 163338 1387 ## COG1078 HD superfamily phosphohydrolases + Term 163468 - 163519 1.8 - Term 163333 - 163360 -0.8 177 67 Tu 1 . - CDS 163366 - 164331 1113 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 164353 - 164412 4.1 - Term 164366 - 164413 3.6 178 68 Op 1 . - CDS 164414 - 165751 1495 ## COG2851 H+/citrate symporter 179 68 Op 2 . - CDS 165767 - 167152 1650 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) 180 68 Op 3 . - CDS 167197 - 168024 762 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 168056 - 168115 5.6 - Term 168069 - 168124 12.5 181 69 Op 1 2/0.104 - CDS 168149 - 168382 156 ## COG4466 Uncharacterized protein conserved in bacteria 182 69 Op 2 7/0.000 - CDS 168452 - 169333 1034 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 183 69 Op 3 3/0.052 - CDS 169323 - 169886 607 ## COG1658 Small primase-like proteins (Toprim domain) 184 69 Op 4 8/0.000 - CDS 169873 - 170643 788 ## COG0084 Mg-dependent DNase 185 69 Op 5 . - CDS 170643 - 172631 2419 ## COG0143 Methionyl-tRNA synthetase - Prom 172654 - 172713 3.5 - Term 172669 - 172706 1.3 186 70 Tu 1 . - CDS 172722 - 175406 2429 ## COG0474 Cation transport ATPase - Prom 175471 - 175530 2.5 - Term 175463 - 175506 1.5 187 71 Op 1 . - CDS 175696 - 176232 227 ## lhv_0227 hypothetical protein 188 71 Op 2 . - CDS 176222 - 176704 449 ## COG2131 Deoxycytidylate deaminase 189 71 Op 3 . - CDS 176718 - 177740 1280 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 177873 - 177932 77.8 + TRNA 177854 - 177924 60.2 # Gly CCC 0 0 - Term 177920 - 177953 3.1 190 72 Tu 1 . - CDS 177959 - 178555 501 ## LCRIS_00210 abortive infection protein - Prom 178628 - 178687 5.4 191 73 Op 1 . - CDS 178696 - 179067 324 ## Ldb0294 hypothetical protein 192 73 Op 2 . - CDS 179045 - 180355 1203 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 180385 - 180444 7.7 - Term 180425 - 180457 -0.9 193 74 Op 1 . - CDS 180458 - 180919 578 ## COG0782 Transcription elongation factor 194 74 Op 2 . - CDS 180919 - 181491 633 ## gi|260661471|ref|ZP_05862384.1| predicted protein - Prom 181592 - 181651 8.4 + Prom 181442 - 181501 9.4 195 75 Tu 1 . + CDS 181632 - 182948 1707 ## COG3579 Aminopeptidase C + Term 182949 - 183002 11.5 - Term 183221 - 183264 -0.3 196 76 Tu 1 . - CDS 183327 - 185018 1442 ## COG4716 Myosin-crossreactive antigen - Prom 185046 - 185105 6.4 - TRNA 185142 - 185214 65.9 # Thr GGT 0 0 - Term 185207 - 185239 4.9 197 77 Tu 1 . - CDS 185247 - 186509 610 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 186741 - 186800 7.6 + Prom 186780 - 186839 8.3 198 78 Tu 1 . + CDS 186884 - 189460 1669 ## COG4485 Predicted membrane protein + Term 189462 - 189495 4.5 + Prom 189477 - 189536 6.9 199 79 Tu 1 . + CDS 189570 - 192170 1645 ## COG4485 Predicted membrane protein + Prom 192198 - 192257 9.9 200 80 Op 1 . + CDS 192354 - 193469 627 ## COG4485 Predicted membrane protein 201 80 Op 2 . + CDS 193415 - 194920 953 ## COG4485 Predicted membrane protein + Prom 194922 - 194981 7.8 202 80 Op 3 . + CDS 195001 - 195945 698 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 195972 - 196021 10.2 - Term 195954 - 196015 13.6 203 81 Op 1 . - CDS 196038 - 196655 349 ## COG0344 Predicted membrane protein 204 81 Op 2 . - CDS 196658 - 197803 1455 ## COG1316 Transcriptional regulator - Prom 197857 - 197916 9.8 - Term 197901 - 197945 11.1 205 82 Op 1 . - CDS 197956 - 198648 1140 ## COG0588 Phosphoglycerate mutase 1 206 82 Op 2 . - CDS 198611 - 198811 108 ## - Prom 198846 - 198905 2.7 207 83 Op 1 36/0.000 - CDS 198908 - 201451 2890 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 208 83 Op 2 . - CDS 201469 - 202170 326 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 202300 - 202359 11.2 + Prom 202045 - 202104 6.1 209 84 Tu 1 . + CDS 202285 - 202842 440 ## COG1309 Transcriptional regulator + Term 202863 - 202902 3.0 - Term 202851 - 202888 6.4 210 85 Op 1 12/0.000 - CDS 202892 - 203353 495 ## COG3610 Uncharacterized conserved protein 211 85 Op 2 . - CDS 203355 - 204122 553 ## COG2966 Uncharacterized conserved protein 212 85 Op 3 . - CDS 204134 - 205675 1726 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 213 85 Op 4 . - CDS 205733 - 206101 468 ## LBA1760 hypothetical protein - Prom 206264 - 206323 9.8 + Prom 206237 - 206296 12.2 214 86 Tu 1 . + CDS 206447 - 206932 724 ## LSEI_0249 cell wall-associated hydrolase + Term 206976 - 207001 -0.8 - Term 206961 - 206991 3.4 215 87 Op 1 . - CDS 207003 - 208790 1905 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 208810 - 208869 5.4 - Term 208821 - 208858 4.0 216 87 Op 2 . - CDS 208871 - 210691 2304 ## COG1705 Muramidase (flagellum-specific) + Prom 211017 - 211076 10.1 217 88 Op 1 . + CDS 211130 - 211534 366 ## lhv_0177 hypothetical protein + Term 211580 - 211609 -0.2 + Prom 211561 - 211620 3.8 218 88 Op 2 . + CDS 211642 - 213684 2348 ## COG3158 K+ transporter + Term 213686 - 213728 11.4 - Term 213674 - 213716 11.4 219 89 Op 1 . - CDS 213719 - 215662 2454 ## COG3590 Predicted metalloendopeptidase - Prom 215685 - 215744 4.5 220 89 Op 2 1/0.156 - CDS 215765 - 216979 958 ## COG0477 Permeases of the major facilitator superfamily - Prom 217000 - 217059 7.3 - Term 217014 - 217068 7.0 221 90 Tu 1 . - CDS 217069 - 218361 1275 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 218393 - 218452 7.2 - Term 218490 - 218526 5.1 222 91 Op 1 . - CDS 218534 - 219100 420 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 223 91 Op 2 12/0.000 - CDS 219109 - 219825 858 ## COG0602 Organic radical activating enzymes 224 91 Op 3 . - CDS 219815 - 222043 2737 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 222166 - 222225 5.2 - Term 222184 - 222222 4.4 225 92 Tu 1 . - CDS 222244 - 224193 2414 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) - Prom 224215 - 224274 8.8 226 93 Op 1 . - CDS 224298 - 225674 1269 ## LBUL_0182 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase - Term 225686 - 225715 0.5 227 93 Op 2 . - CDS 225727 - 226212 675 ## LCRIS_00151 hypothetical protein - Prom 226233 - 226292 5.5 - Term 226239 - 226277 5.5 228 94 Op 1 8/0.000 - CDS 226294 - 227106 980 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 229 94 Op 2 9/0.000 - CDS 227106 - 227906 868 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 230 94 Op 3 15/0.000 - CDS 227899 - 228672 337 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 231 94 Op 4 . - CDS 228704 - 229633 1240 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component - Term 229948 - 229981 3.1 232 95 Tu 1 . - CDS 230006 - 230488 586 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 230592 - 230651 6.3 + Prom 230535 - 230594 7.5 233 96 Tu 1 . + CDS 230621 - 231421 557 ## COG2365 Protein tyrosine/serine phosphatase + Term 231423 - 231473 14.3 + Prom 231435 - 231494 11.0 234 97 Tu 1 . + CDS 231534 - 232010 612 ## LBA0145 2-deoxyribosyltransferase + Term 232014 - 232045 2.1 - TRNA 232094 - 232169 83.7 # Asn GTT 0 0 - 5S_RRNA 232182 - 232296 96.0 # EU184020 [D:4881..4998] # 5S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. - LSU_RRNA 232354 - 233690 94.0 # Y17360 [D:1..3560] # 23S ribosomal RNA # Lactobacillus amylolyticus DSM 11664 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. - LSU_RRNA 233787 - 234909 93.0 # Y17360 [D:1..3560] # 23S ribosomal RNA # Lactobacillus amylolyticus DSM 11664 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. - TRNA 235374 - 235446 76.9 # Ala TGC 0 0 - TRNA 235483 - 235556 91.8 # Ile GAT 0 0 - SSU_RRNA 235689 - 237243 99.0 # EU559597 [D:1..1563] # 16S ribosomal RNA # Lactobacillus jensenii # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. - Term 237809 - 237857 3.4 235 98 Tu 1 . - CDS 237862 - 238695 825 ## LCRIS_01884 D-ala, D-ala ligase - Prom 238931 - 238990 8.2 + Prom 238742 - 238801 6.8 236 99 Tu 1 . + CDS 238825 - 240066 1161 ## COG0477 Permeases of the major facilitator superfamily 237 100 Tu 1 . - CDS 240063 - 241280 929 ## COG0477 Permeases of the major facilitator superfamily - Prom 241488 - 241547 6.7 + Prom 241269 - 241328 4.4 238 101 Tu 1 . + CDS 241377 - 242207 496 ## LBA1934 transcriptional regulator - Term 242198 - 242245 7.0 239 102 Op 1 20/0.000 - CDS 242263 - 243120 947 ## COG3833 ABC-type maltose transport systems, permease component 240 102 Op 2 19/0.000 - CDS 243123 - 244481 1176 ## COG1175 ABC-type sugar transport systems, permease components - Term 244491 - 244526 1.5 241 102 Op 3 3/0.052 - CDS 244541 - 245752 1738 ## COG2182 Maltose-binding periplasmic proteins/domains 242 102 Op 4 3/0.052 - CDS 245774 - 247363 1347 ## COG0366 Glycosidases 243 102 Op 5 3/0.052 - CDS 247393 - 248502 1251 ## COG3839 ABC-type sugar transport systems, ATPase components 244 102 Op 6 11/0.000 - CDS 248508 - 249179 907 ## COG0637 Predicted phosphatase/phosphohexomutase 245 102 Op 7 3/0.052 - CDS 249164 - 251431 2667 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) - Prom 251454 - 251513 5.8 246 103 Op 1 7/0.000 - CDS 251549 - 253255 1668 ## COG0366 Glycosidases 247 103 Op 2 3/0.052 - CDS 253257 - 254900 1446 ## COG0366 Glycosidases - Prom 254959 - 255018 5.4 - Term 254958 - 255005 8.6 248 104 Op 1 . - CDS 255044 - 255994 960 ## COG1609 Transcriptional regulators 249 104 Op 2 . - CDS 255994 - 256758 867 ## COG2365 Protein tyrosine/serine phosphatase 250 104 Op 3 . - CDS 256771 - 258267 1683 ## COG0554 Glycerol kinase - Prom 258301 - 258360 11.3 + Prom 258232 - 258291 5.2 251 105 Op 1 . + CDS 258399 - 259211 886 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 252 105 Op 2 . + CDS 259265 - 259951 780 ## COG3442 Predicted glutamine amidotransferase + Term 259957 - 259995 6.4 - Term 259945 - 259983 6.4 253 106 Op 1 1/0.156 - CDS 259989 - 261284 1515 ## COG0015 Adenylosuccinate lyase 254 106 Op 2 . - CDS 261285 - 262577 1633 ## COG0104 Adenylosuccinate synthase - Prom 262761 - 262820 7.1 + Prom 262676 - 262735 5.4 255 107 Tu 1 . + CDS 262761 - 263753 1005 ## COG0516 IMP dehydrogenase/GMP reductase + Term 263760 - 263804 10.2 256 108 Op 1 . - CDS 263773 - 264681 845 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 257 108 Op 2 1/0.156 - CDS 264743 - 266152 1535 ## COG0531 Amino acid transporters 258 108 Op 3 . - CDS 266166 - 266897 1005 ## COG2071 Predicted glutamine amidotransferases 259 108 Op 4 . - CDS 266977 - 267627 616 ## COG1418 Predicted HD superfamily hydrolase - Prom 267652 - 267711 1.9 - Term 267670 - 267705 4.2 260 108 Op 5 . - CDS 267716 - 269755 1334 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 269901 - 269960 11.0 - Term 269899 - 269958 18.1 261 109 Op 1 . - CDS 269972 - 270874 994 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold 262 109 Op 2 . - CDS 270846 - 272225 1355 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 272251 - 272310 5.0 + Prom 272205 - 272264 6.8 263 110 Op 1 . + CDS 272352 - 272582 207 ## gi|256851631|ref|ZP_05557019.1| predicted protein 264 110 Op 2 21/0.000 + CDS 272624 - 273808 927 ## COG0477 Permeases of the major facilitator superfamily 265 110 Op 3 2/0.104 + CDS 273828 - 275012 949 ## COG0477 Permeases of the major facilitator superfamily + Prom 275017 - 275076 4.6 266 111 Tu 1 . + CDS 275280 - 276290 1398 ## COG1087 UDP-glucose 4-epimerase + Term 276317 - 276352 5.1 - Term 276303 - 276338 5.1 267 112 Op 1 . - CDS 276339 - 277271 779 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 268 112 Op 2 6/0.000 - CDS 277271 - 278587 1067 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) 269 112 Op 3 7/0.000 - CDS 278580 - 278819 454 ## COG0236 Acyl carrier protein 270 112 Op 4 6/0.000 - CDS 278849 - 280078 1072 ## COG1696 Predicted membrane protein involved in D-alanine export 271 112 Op 5 . - CDS 280075 - 281583 1479 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 272 112 Op 6 . - CDS 281599 - 281784 148 ## gi|256851640|ref|ZP_05557028.1| predicted protein 273 112 Op 7 . - CDS 281853 - 282152 183 ## gi|282933290|ref|ZP_06338676.1| hypothetical protein HMPREF0886_1312 274 112 Op 8 . - CDS 282181 - 283326 933 ## LBA1927 hypothetical protein - Prom 283361 - 283420 13.9 - Term 283367 - 283404 3.1 275 113 Tu 1 . - CDS 283423 - 285045 2159 ## COG0281 Malic enzyme - Prom 285143 - 285202 9.7 + Prom 285067 - 285126 8.4 276 114 Tu 1 . + CDS 285181 - 286056 754 ## COG0583 Transcriptional regulator + Term 286263 - 286310 6.7 + Prom 286855 - 286914 10.7 277 115 Tu 1 . + CDS 287090 - 287557 410 ## COG0517 FOG: CBS domain + Prom 287559 - 287618 10.3 278 116 Op 1 . + CDS 287688 - 289544 1892 ## COG2217 Cation transport ATPase 279 116 Op 2 . + CDS 289607 - 290764 1319 ## COG0475 Kef-type K+ transport systems, membrane components 280 116 Op 3 . + CDS 290837 - 291922 692 ## COG1434 Uncharacterized conserved protein + Term 291982 - 292021 2.0 + Prom 291930 - 291989 7.1 281 117 Tu 1 1/0.156 + CDS 292071 - 293009 1228 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component + Term 293050 - 293082 2.0 + Prom 293069 - 293128 10.9 282 118 Tu 1 . + CDS 293256 - 294182 857 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component + Term 294192 - 294229 1.0 + Prom 294373 - 294432 5.3 283 119 Op 1 2/0.104 + CDS 294463 - 295542 1042 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 284 119 Op 2 2/0.104 + CDS 295602 - 296675 1401 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein + Term 296722 - 296759 7.3 + Prom 296707 - 296766 9.7 285 120 Op 1 15/0.000 + CDS 296874 - 297971 1348 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein + Term 298000 - 298033 2.2 + Prom 297976 - 298035 3.6 286 120 Op 2 24/0.000 + CDS 298056 - 299591 187 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 287 120 Op 3 26/0.000 + CDS 299591 - 300736 1505 ## COG4603 ABC-type uncharacterized transport system, permease component 288 120 Op 4 . + CDS 300736 - 301692 1042 ## COG1079 Uncharacterized ABC-type transport system, permease component + Term 301701 - 301738 6.1 + Prom 301706 - 301765 6.1 289 121 Tu 1 . + CDS 301790 - 302509 765 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Term 302523 - 302580 8.0 + Prom 302567 - 302626 6.5 290 122 Op 1 3/0.052 + CDS 302663 - 303313 925 ## COG1428 Deoxynucleoside kinases 291 122 Op 2 . + CDS 303338 - 304009 871 ## COG1428 Deoxynucleoside kinases + Term 304012 - 304068 10.1 + Prom 304097 - 304156 8.7 292 123 Tu 1 . + CDS 304204 - 305700 1034 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 305713 - 305746 3.1 - Term 305699 - 305732 3.1 293 124 Tu 1 . - CDS 305737 - 307323 184 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 307357 - 307416 12.3 - Term 307411 - 307450 8.1 294 125 Tu 1 . - CDS 307494 - 308720 1655 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases - Prom 308758 - 308817 8.7 + Prom 308836 - 308895 5.7 295 126 Op 1 4/0.042 + CDS 308945 - 310252 1537 ## COG2252 Permeases + Term 310297 - 310341 0.7 + Prom 310262 - 310321 7.5 296 126 Op 2 . + CDS 310348 - 311658 1617 ## COG2252 Permeases + Term 311668 - 311701 4.0 - Term 311656 - 311689 4.0 297 127 Op 1 . - CDS 311695 - 313203 1084 ## COG0038 Chloride channel protein EriC - Prom 313224 - 313283 8.5 - Term 313233 - 313265 2.0 298 127 Op 2 . - CDS 313286 - 314245 871 ## COG0679 Predicted permeases - Prom 314293 - 314352 6.9 - Term 314336 - 314374 3.0 299 128 Op 1 . - CDS 314390 - 315778 1958 ## COG0362 6-phosphogluconate dehydrogenase - Prom 315801 - 315860 7.6 - Term 315814 - 315858 10.2 300 128 Op 2 . - CDS 315877 - 317496 1699 ## SH2426 hypothetical protein - Prom 317545 - 317604 7.9 - Term 317631 - 317691 8.7 301 129 Tu 1 . - CDS 317704 - 319509 2478 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Prom 319657 - 319716 7.8 - Term 319779 - 319815 0.9 302 130 Op 1 11/0.000 - CDS 319816 - 321720 2121 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 303 130 Op 2 10/0.000 - CDS 321730 - 323112 1408 ## COG0486 Predicted GTPase - Prom 323138 - 323197 1.5 - Term 323125 - 323179 3.8 304 130 Op 3 22/0.000 - CDS 323206 - 324063 856 ## COG0706 Preprotein translocase subunit YidC 305 130 Op 4 . - CDS 324065 - 324433 330 ## COG0594 RNase P protein component - Term 324455 - 324485 -0.5 306 130 Op 5 . - CDS 324487 - 324627 234 ## PROTEIN SUPPORTED gi|227525161|ref|ZP_03955210.1| 50S ribosomal protein L34 - Prom 324707 - 324766 9.0 + Prom 325050 - 325109 2.2 307 131 Op 1 16/0.000 + CDS 325135 - 326460 1398 ## COG0593 ATPase involved in DNA replication initiation + Term 326472 - 326510 2.1 + Prom 326536 - 326595 5.2 308 131 Op 2 6/0.000 + CDS 326626 - 327756 1362 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) + Term 327769 - 327826 9.4 + Prom 327763 - 327822 10.6 309 132 Op 1 9/0.000 + CDS 327974 - 328189 114 ## COG2501 Uncharacterized conserved protein 310 132 Op 2 9/0.000 + CDS 328192 - 329316 1017 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 311 132 Op 3 24/0.000 + CDS 329319 - 331274 2302 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 312 132 Op 4 . + CDS 331286 - 333763 3199 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Prom 333827 - 333886 6.0 313 133 Op 1 24/0.000 + CDS 333968 - 334261 500 ## PROTEIN SUPPORTED gi|227525168|ref|ZP_03955217.1| ribosomal protein S6 314 133 Op 2 21/0.000 + CDS 334298 - 334813 840 ## COG0629 Single-stranded DNA-binding protein 315 133 Op 3 . + CDS 334837 - 335073 396 ## PROTEIN SUPPORTED gi|227525170|ref|ZP_03955219.1| 30S ribosomal protein S18 + Term 335089 - 335129 7.4 + Prom 335113 - 335172 8.4 316 134 Op 1 9/0.000 + CDS 335206 - 337224 751 ## PROTEIN SUPPORTED gi|194246575|ref|YP_002004214.1| 50S ribosomal protein L9 317 134 Op 2 16/0.000 + CDS 337244 - 337696 749 ## PROTEIN SUPPORTED gi|227525172|ref|ZP_03955221.1| 50S ribosomal protein L9 318 134 Op 3 . + CDS 337712 - 339079 1844 ## COG0305 Replicative DNA helicase + Term 339082 - 339126 6.1 - Term 339075 - 339108 4.0 319 135 Op 1 . - CDS 339112 - 340260 1129 ## LCRIS_00021 hypothetical protein - Prom 340285 - 340344 6.5 - Term 340306 - 340352 4.1 320 135 Op 2 . - CDS 340353 - 341060 850 ## COG1285 Uncharacterized membrane protein - Prom 341231 - 341290 75.8 + TRNA 341214 - 341286 84.2 # Thr AGT 0 0 + Prom 341585 - 341644 8.0 321 136 Tu 1 . + CDS 341669 - 342814 1176 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 342825 - 342858 3.1 + Prom 342853 - 342912 6.2 322 137 Tu 1 . + CDS 342944 - 344095 967 ## gi|297205298|ref|ZP_06922694.1| TerC family integral membrane protein + Term 344137 - 344180 6.1 + Prom 344348 - 344407 10.0 323 138 Op 1 . + CDS 344443 - 345882 1884 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 324 138 Op 2 . + CDS 345941 - 346522 441 ## COG0406 Fructose-2,6-bisphosphatase 325 138 Op 3 . + CDS 346593 - 347069 417 ## LEGAS_0620 putative sugar transporter 326 138 Op 4 . + CDS 347053 - 347901 1006 ## COG0561 Predicted hydrolases of the HAD superfamily 327 139 Tu 1 . - CDS 348063 - 348782 665 ## COG2188 Transcriptional regulators - Prom 348853 - 348912 4.5 + Prom 348687 - 348746 8.0 328 140 Op 1 8/0.000 + CDS 348941 - 349258 588 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 329 140 Op 2 13/0.000 + CDS 349271 - 349657 645 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 330 140 Op 3 . + CDS 349684 - 351045 1660 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 351064 - 351101 6.4 + Prom 351087 - 351146 5.5 331 141 Op 1 . + CDS 351182 - 351511 457 ## COG1695 Predicted transcriptional regulators 332 141 Op 2 . + CDS 351513 - 351929 546 ## LCABL_20950 hypothetical protein + Term 352142 - 352180 -0.9 333 142 Op 1 . + CDS 352306 - 352866 151 ## lhv_1083 putative transposase 334 142 Op 2 . + CDS 352900 - 353118 93 ## gi|256851692|ref|ZP_05557080.1| predicted protein 335 143 Tu 1 . - CDS 353135 - 353533 522 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog - Prom 353642 - 353701 7.6 336 144 Op 1 . + CDS 353636 - 354376 560 ## COG0583 Transcriptional regulator 337 144 Op 2 . + CDS 354456 - 355262 677 ## lhv_0044 putative esterase + Term 355368 - 355407 1.7 + Prom 355284 - 355343 4.1 338 145 Op 1 . + CDS 355502 - 356644 1155 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 339 145 Op 2 . + CDS 356713 - 357540 1011 ## COG0708 Exonuclease III + Term 357548 - 357577 0.5 340 145 Op 3 . + CDS 357587 - 360397 2249 ## COG1061 DNA or RNA helicases of superfamily II 341 145 Op 4 . + CDS 360447 - 361304 1045 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 361313 - 361353 4.2 + Prom 361308 - 361367 8.0 342 146 Tu 1 . + CDS 361387 - 362100 834 ## COG5523 Predicted integral membrane protein + Term 362125 - 362169 7.2 + Prom 362113 - 362172 6.6 343 147 Tu 1 . + CDS 362207 - 362524 511 ## gi|297205319|ref|ZP_06922715.1| conserved hypothetical protein + Term 362553 - 362592 7.0 - Term 362545 - 362576 2.7 344 148 Tu 1 . - CDS 362620 - 363876 826 ## COG0477 Permeases of the major facilitator superfamily - Prom 363918 - 363977 10.9 + Prom 363880 - 363939 10.3 345 149 Tu 1 . + CDS 363980 - 364852 854 ## lhv_1911 hypothetical protein 346 150 Op 1 3/0.052 - CDS 364837 - 365496 242 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 347 150 Op 2 . - CDS 365489 - 367579 1077 ## COG4652 Uncharacterized protein conserved in bacteria - Prom 367713 - 367772 9.9 - Term 367734 - 367776 4.1 348 151 Tu 1 . - CDS 367778 - 368626 593 ## LCRIS_00111 transcriptional regulator, XRE family - Prom 368735 - 368794 8.3 349 152 Tu 1 . + CDS 368790 - 368966 82 ## 350 153 Tu 1 . - CDS 368879 - 369598 1179 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 369626 - 369685 6.3 - Term 369842 - 369886 2.1 351 154 Tu 1 . - CDS 369950 - 370951 1549 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 371021 - 371080 7.0 352 155 Op 1 18/0.000 - CDS 371119 - 371583 665 ## COG0054 Riboflavin synthase beta-chain 353 155 Op 2 15/0.000 - CDS 371602 - 372777 1228 ## COG0807 GTP cyclohydrolase II 354 155 Op 3 16/0.000 - CDS 372780 - 373385 477 ## COG0307 Riboflavin synthase alpha chain 355 155 Op 4 . - CDS 373378 - 374433 1079 ## COG0117 Pyrimidine deaminase + Prom 374739 - 374798 8.4 356 156 Tu 1 . + CDS 374828 - 376207 1770 ## COG1114 Branched-chain amino acid permeases + Term 376225 - 376280 13.4 - Term 376223 - 376258 6.0 357 157 Tu 1 . - CDS 376259 - 377182 792 ## COG0583 Transcriptional regulator - Prom 377210 - 377269 6.8 + Prom 377215 - 377274 7.7 358 158 Tu 1 . + CDS 377315 - 379162 2272 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 379163 - 379207 9.1 - Term 379152 - 379196 8.2 359 159 Op 1 . - CDS 379208 - 379438 410 ## COG4892 Predicted heme/steroid binding protein - Prom 379539 - 379598 7.3 - TRNA 379588 - 379663 85.6 # Lys CTT 0 0 - Term 379535 - 379587 2.8 360 159 Op 2 . - CDS 379737 - 380936 774 ## LJ0777 hypothetical protein - Prom 381099 - 381158 18.1 - Term 381120 - 381182 13.4 361 160 Tu 1 . - CDS 381190 - 382404 984 ## COG0004 Ammonia permease - TRNA 382585 - 382660 85.6 # Lys CTT 0 0 362 161 Op 1 8/0.000 + CDS 382796 - 383509 1011 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 363 161 Op 2 . + CDS 383545 - 385407 1813 ## COG5002 Signal transduction histidine kinase 364 161 Op 3 . + CDS 385397 - 386749 1482 ## LCRIS_00075 hypothetical protein 365 161 Op 4 4/0.042 + CDS 386753 - 387565 599 ## COG4853 Uncharacterized protein conserved in bacteria 366 161 Op 5 3/0.052 + CDS 387651 - 388373 707 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 367 161 Op 6 1/0.156 + CDS 388452 - 389732 1580 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 389747 - 389791 8.1 + Prom 390064 - 390123 5.7 368 162 Tu 1 . + CDS 390199 - 390678 651 ## COG1576 Uncharacterized conserved protein + Term 390691 - 390728 0.2 + Prom 390700 - 390759 9.1 369 163 Op 1 . + CDS 390858 - 391628 293 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 370 163 Op 2 . + CDS 391631 - 392368 607 ## LJ0601 hypothetical protein 371 163 Op 3 . + CDS 392368 - 393084 653 ## LJ0602 hypothetical protein + Prom 393091 - 393150 2.8 372 163 Op 4 . + CDS 393190 - 394761 1501 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 394790 - 394841 11.5 + Prom 394793 - 394852 5.4 373 164 Tu 1 . + CDS 394898 - 395314 590 ## LCRIS_00802 hypothetical protein + Prom 395387 - 395446 5.2 374 165 Tu 1 . + CDS 395516 - 395743 194 ## gi|260661552|ref|ZP_05862464.1| LOW QUALITY PROTEIN: conserved hypothetical protein + Prom 395762 - 395821 7.5 375 166 Tu 1 . + CDS 395861 - 396403 601 ## gi|256851731|ref|ZP_05557119.1| predicted protein 376 167 Op 1 . - CDS 396458 - 397138 523 ## LJ0072 ABC transporter permease component 377 167 Op 2 . - CDS 397104 - 398498 1108 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 398595 - 398654 5.9 + Prom 398605 - 398664 8.8 378 168 Op 1 5/0.031 + CDS 398688 - 400160 1314 ## COG0477 Permeases of the major facilitator superfamily 379 168 Op 2 . + CDS 400202 - 401143 769 ## COG2207 AraC-type DNA-binding domain-containing proteins 380 168 Op 3 . + CDS 401162 - 402964 1583 ## COG4907 Predicted membrane protein + Term 403016 - 403058 6.1 + Prom 403059 - 403118 5.9 381 169 Op 1 9/0.000 + CDS 403150 - 403812 749 ## COG1760 L-serine deaminase 382 169 Op 2 . + CDS 403821 - 404702 1168 ## COG1760 L-serine deaminase 383 169 Op 3 . + CDS 404712 - 405026 492 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme + Term 405038 - 405085 12.1 - Term 405034 - 405065 3.4 384 170 Op 1 3/0.052 - CDS 405069 - 405965 963 ## COG0501 Zn-dependent protease with chaperone function 385 170 Op 2 . - CDS 405969 - 406529 696 ## COG1704 Uncharacterized conserved protein - Prom 406563 - 406622 7.2 386 170 Op 3 . - CDS 406629 - 407735 1025 ## COG0471 Di- and tricarboxylate transporters - Prom 407866 - 407925 7.0 + Prom 407823 - 407882 7.1 387 171 Tu 1 . + CDS 407922 - 408323 635 ## LBA0100 hypothetical protein 388 172 Tu 1 . - CDS 408414 - 408974 151 ## lhv_1083 putative transposase + Prom 409329 - 409388 7.4 389 173 Tu 1 . + CDS 409593 - 409727 191 ## + Term 409738 - 409783 9.1 + Prom 409730 - 409789 8.3 390 174 Op 1 . + CDS 409873 - 410514 708 ## COG1896 Predicted hydrolases of HD superfamily 391 174 Op 2 . + CDS 410514 - 411428 815 ## LCRIS_00095 restriction endonuclease + Term 411432 - 411471 -0.8 - Term 411419 - 411459 7.0 392 175 Tu 1 . - CDS 411492 - 412376 1043 ## COG0657 Esterase/lipase - Prom 412434 - 412493 9.1 + Prom 412381 - 412440 6.7 393 176 Op 1 1/0.156 + CDS 412546 - 412839 287 ## COG2188 Transcriptional regulators 394 176 Op 2 1/0.156 + CDS 412849 - 413292 381 ## COG2188 Transcriptional regulators + Term 413326 - 413383 5.2 + Prom 413310 - 413369 11.3 395 177 Op 1 . + CDS 413446 - 414357 985 ## COG0524 Sugar kinases, ribokinase family 396 177 Op 2 2/0.104 + CDS 414354 - 415304 1219 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 397 177 Op 3 . + CDS 415319 - 416710 1732 ## COG0477 Permeases of the major facilitator superfamily 398 177 Op 4 . + CDS 416755 - 417207 504 ## COG0590 Cytosine/adenosine deaminases + Term 417223 - 417261 5.7 + Prom 417290 - 417349 7.4 399 178 Op 1 . + CDS 417388 - 417558 201 ## gi|256851753|ref|ZP_05557141.1| predicted protein 400 178 Op 2 . + CDS 417567 - 418049 435 ## COG3542 Uncharacterized conserved protein + Term 418050 - 418085 6.0 - Term 418038 - 418073 6.0 401 179 Tu 1 . - CDS 418074 - 418373 399 ## LSEI_0563 hypothetical protein - Prom 418408 - 418467 5.4 - Term 418416 - 418447 0.1 402 180 Op 1 13/0.000 - CDS 418506 - 419342 1018 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 403 180 Op 2 13/0.000 - CDS 419344 - 420195 1263 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 404 180 Op 3 9/0.000 - CDS 420223 - 420726 853 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 405 180 Op 4 . - CDS 420739 - 421176 677 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 421331 - 421390 6.2 + Prom 421246 - 421305 8.0 406 181 Tu 1 . + CDS 421373 - 422161 897 ## COG0561 Predicted hydrolases of the HAD superfamily + Prom 422179 - 422238 7.9 407 182 Op 1 1/0.156 + CDS 422283 - 423113 757 ## COG1879 ABC-type sugar transport system, periplasmic component 408 182 Op 2 19/0.000 + CDS 423113 - 424429 1138 ## COG4585 Signal transduction histidine kinase 409 182 Op 3 1/0.156 + CDS 424422 - 425093 741 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 410 182 Op 4 . + CDS 425095 - 426366 1223 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 426375 - 426406 2.1 - Term 426362 - 426393 2.1 411 183 Op 1 2/0.104 - CDS 426413 - 427420 1013 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 412 183 Op 2 . - CDS 427492 - 428757 335 ## PROTEIN SUPPORTED gi|148990506|ref|ZP_01821647.1| ribosomal protein L11 methyltransferase - Prom 428787 - 428846 6.3 + Prom 429073 - 429132 5.2 413 184 Tu 1 . + CDS 429152 - 429994 523 ## lhv_1911 hypothetical protein + Term 429999 - 430041 7.1 - Term 429983 - 430031 11.8 414 185 Op 1 16/0.000 - CDS 430046 - 430792 283 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 415 185 Op 2 . - CDS 430792 - 432354 1559 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 432406 - 432465 5.1 - Term 432444 - 432483 4.1 416 186 Tu 1 . - CDS 432713 - 433354 762 ## COG2094 3-methyladenine DNA glycosylase - Prom 433378 - 433437 4.9 + Prom 433318 - 433377 6.6 417 187 Tu 1 . + CDS 433408 - 433770 347 ## COG3189 Uncharacterized conserved protein - Term 433620 - 433668 3.5 418 188 Tu 1 . - CDS 433751 - 434446 763 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Prom 434473 - 434532 5.9 + Prom 434453 - 434512 6.7 419 189 Tu 1 . + CDS 434534 - 435010 668 ## LJ0094 hypothetical protein + Term 435046 - 435090 8.4 + Prom 435728 - 435787 7.6 420 190 Tu 1 . + CDS 435899 - 437077 456 ## COG3328 Transposase and inactivated derivatives + Term 437146 - 437191 4.2 + Prom 437926 - 437985 6.8 421 191 Tu 1 . + CDS 438043 - 438810 642 ## SSA_0044 hypothetical protein + Prom 438957 - 439016 6.7 422 192 Op 1 6/0.000 + CDS 439040 - 439324 290 ## COG3549 Plasmid maintenance system killer protein 423 192 Op 2 . + CDS 439345 - 439644 369 ## COG3093 Plasmid maintenance system antidote protein + Prom 439656 - 439715 7.7 424 193 Tu 1 . + CDS 439827 - 441005 443 ## COG3328 Transposase and inactivated derivatives + Term 441077 - 441113 0.4 + Prom 441091 - 441150 7.3 425 194 Tu 1 . + CDS 441185 - 443314 2194 ## COG3409 Putative peptidoglycan-binding domain-containing protein + Term 443428 - 443462 -0.8 426 195 Tu 1 . - CDS 443339 - 443890 392 ## gi|256851784|ref|ZP_05557172.1| predicted protein - Prom 443933 - 443992 7.5 + Prom 443835 - 443894 7.9 427 196 Tu 1 . + CDS 444006 - 444113 57 ## + Term 444179 - 444225 6.2 - Term 444109 - 444151 0.4 428 197 Op 1 . - CDS 444218 - 445675 1084 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 429 197 Op 2 . - CDS 445698 - 446402 707 ## COG2738 Predicted Zn-dependent protease 430 197 Op 3 . - CDS 446440 - 447363 723 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Prom 447390 - 447449 7.6 + Prom 447145 - 447204 10.0 431 198 Op 1 . + CDS 447439 - 448206 640 ## COG0328 Ribonuclease HI 432 198 Op 2 . + CDS 448235 - 448999 847 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance + Term 449012 - 449045 3.1 - Term 448998 - 449031 3.1 433 199 Tu 1 . - CDS 449051 - 450010 1198 ## COG4086 Predicted secreted protein - Prom 450143 - 450202 6.5 + Prom 449988 - 450047 6.7 434 200 Op 1 1/0.156 + CDS 450176 - 450988 803 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 435 200 Op 2 . + CDS 451007 - 451663 684 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 451667 - 451700 4.0 - Term 451655 - 451688 4.0 436 201 Tu 1 . - CDS 451692 - 452066 504 ## COG3759 Predicted membrane protein - Prom 452161 - 452220 8.0 + Prom 452019 - 452078 6.7 437 202 Tu 1 . + CDS 452208 - 453194 1400 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 453219 - 453264 10.3 + Prom 453236 - 453295 7.3 438 203 Op 1 . + CDS 453323 - 454018 720 ## Ldb0181 TetR family transcriptional regulator 439 203 Op 2 . + CDS 454029 - 454862 821 ## LCRIS_00124 hypothetical protein 440 203 Op 3 . + CDS 454886 - 455158 261 ## gi|297205418|ref|ZP_06922814.1| hypothetical protein HMPREF0526_10446 - Term 455134 - 455189 9.5 441 204 Tu 1 . - CDS 455216 - 456715 1781 ## LJ0107 hypothetical protein - Prom 456738 - 456797 6.7 + Prom 456729 - 456788 10.4 442 205 Op 1 . + CDS 456920 - 458005 1289 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 443 205 Op 2 . + CDS 458017 - 458736 977 ## lhv_0144 hypothetical protein + Term 458748 - 458787 2.3 444 206 Op 1 3/0.052 + CDS 458811 - 459911 1017 ## COG5438 Predicted multitransmembrane protein 445 206 Op 2 . + CDS 459913 - 460668 792 ## COG5438 Predicted multitransmembrane protein + Term 460698 - 460757 -0.8 446 207 Tu 1 . - CDS 460719 - 463697 2750 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases - Prom 463872 - 463931 7.1 + Prom 463581 - 463640 5.4 447 208 Op 1 . + CDS 463842 - 465002 1552 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 448 208 Op 2 7/0.000 + CDS 465002 - 465835 944 ## COG3711 Transcriptional antiterminator + Prom 465845 - 465904 4.7 449 208 Op 3 8/0.000 + CDS 466034 - 468001 2345 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 450 208 Op 4 . + CDS 468012 - 469499 1833 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 469505 - 469556 7.1 451 209 Tu 1 . - CDS 470003 - 470254 81 ## gi|256851807|ref|ZP_05557195.1| predicted protein - Prom 470308 - 470367 6.8 - Term 471435 - 471489 15.6 452 210 Op 1 . - CDS 471535 - 472395 809 ## COG2207 AraC-type DNA-binding domain-containing proteins 453 210 Op 2 . - CDS 472425 - 473309 1035 ## COG0657 Esterase/lipase - Prom 473335 - 473394 3.8 + Prom 473429 - 473488 5.6 454 211 Tu 1 . + CDS 473512 - 474711 1251 ## COG0477 Permeases of the major facilitator superfamily + Prom 474726 - 474785 8.9 455 212 Op 1 . + CDS 474820 - 475731 1097 ## COG1940 Transcriptional regulator/sugar kinase 456 212 Op 2 . + CDS 475757 - 475909 103 ## gi|238854363|ref|ZP_04644705.1| alpha/beta superfamily hydrolase + Term 475933 - 475984 14.1 + Prom 476040 - 476099 8.4 457 213 Op 1 2/0.104 + CDS 476150 - 477493 1784 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases + Term 477527 - 477557 1.2 458 213 Op 2 3/0.052 + CDS 477570 - 479441 2032 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Prom 479451 - 479510 4.0 459 214 Op 1 . + CDS 479574 - 480347 667 ## COG1737 Transcriptional regulators 460 214 Op 2 . + CDS 480350 - 480841 405 ## LCRIS_00608 hypothetical protein 461 214 Op 3 . + CDS 480852 - 481334 601 ## COG2190 Phosphotransferase system IIA components + Term 481354 - 481397 9.3 + Prom 481381 - 481440 6.5 462 215 Tu 1 . + CDS 481613 - 482773 1241 ## COG0477 Permeases of the major facilitator superfamily + Term 482782 - 482826 12.5 - Term 482770 - 482814 11.7 463 216 Tu 1 . - CDS 482821 - 483696 1174 ## COG1940 Transcriptional regulator/sugar kinase + Prom 483680 - 483739 7.0 464 217 Op 1 . + CDS 483958 - 485136 676 ## COG0477 Permeases of the major facilitator superfamily + Prom 485178 - 485237 11.7 465 217 Op 2 . + CDS 485267 - 486976 2073 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 486981 - 487030 12.2 - Term 486969 - 487018 6.4 466 218 Tu 1 . - CDS 487024 - 487944 200 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 - Prom 487966 - 488025 11.1 + Prom 487988 - 488047 7.2 467 219 Op 1 4/0.042 + CDS 488095 - 489018 1288 ## COG0169 Shikimate 5-dehydrogenase 468 219 Op 2 . + CDS 489055 - 490242 1077 ## COG0477 Permeases of the major facilitator superfamily 469 219 Op 3 . + CDS 490251 - 491009 712 ## COG0710 3-dehydroquinate dehydratase + Term 491024 - 491058 6.2 - Term 491012 - 491046 6.2 470 220 Tu 1 . - CDS 491055 - 491936 875 ## COG0583 Transcriptional regulator - Prom 491976 - 492035 8.8 - Term 492038 - 492081 5.2 471 221 Tu 1 . - CDS 492101 - 493315 818 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 493476 - 493535 8.6 + Prom 493349 - 493408 9.3 472 222 Tu 1 . + CDS 493441 - 495978 2652 ## COG0308 Aminopeptidase N + Term 495981 - 496016 6.1 - Term 495962 - 496010 7.2 473 223 Tu 1 . - CDS 496014 - 496676 737 ## LBA1844 hypothetical protein - Prom 496730 - 496789 6.3 + Prom 496658 - 496717 6.4 474 224 Tu 1 . + CDS 496779 - 497081 399 ## LBA1843 hypothetical protein + Prom 497105 - 497164 5.3 475 225 Tu 1 . + CDS 497193 - 497540 220 ## COG3022 Uncharacterized protein conserved in bacteria + Term 497785 - 497830 -0.6 - Term 497418 - 497450 2.0 476 226 Tu 1 . - CDS 497527 - 498279 1019 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 498300 - 498359 6.5 + Prom 498140 - 498199 6.5 477 227 Tu 1 . + CDS 498354 - 498953 716 ## COG0406 Fructose-2,6-bisphosphatase + Term 498956 - 498988 1.7 + Prom 498966 - 499025 7.8 478 228 Op 1 1/0.156 + CDS 499072 - 499596 313 ## COG1309 Transcriptional regulator 479 228 Op 2 36/0.000 + CDS 499599 - 500657 1101 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 480 228 Op 3 . + CDS 500658 - 501335 233 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Term 501338 - 501371 6.1 - Term 501319 - 501365 10.2 481 229 Op 1 . - CDS 501375 - 502787 1410 ## COG4690 Dipeptidase 482 229 Op 2 . - CDS 502833 - 503393 151 ## lhv_1083 putative transposase + Prom 503743 - 503802 12.0 483 230 Op 1 . + CDS 503842 - 504051 313 ## LCRIS_01861 hypothetical protein 484 230 Op 2 . + CDS 504119 - 504661 701 ## COG1309 Transcriptional regulator + Term 504710 - 504772 11.1 + Prom 504735 - 504794 9.2 485 231 Op 1 1/0.156 + CDS 504821 - 505357 611 ## COG0431 Predicted flavoprotein 486 231 Op 2 . + CDS 505370 - 505918 813 ## COG0431 Predicted flavoprotein + Term 505938 - 505975 0.3 + Prom 505930 - 505989 8.2 487 232 Tu 1 . + CDS 506034 - 507068 958 ## COG3589 Uncharacterized conserved protein + Term 507125 - 507156 2.5 + Prom 507070 - 507129 7.9 488 233 Op 1 . + CDS 507169 - 507951 693 ## COG2365 Protein tyrosine/serine phosphatase 489 233 Op 2 . + CDS 507967 - 508896 1060 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis + Term 508900 - 508931 3.1 - Term 508887 - 508918 3.1 490 234 Tu 1 . - CDS 508924 - 509454 365 ## LGAS_1745 membrane ancor connecting MutS2 with cell-division Z-ring - Prom 509494 - 509553 5.7 + Prom 509430 - 509489 8.5 491 235 Op 1 4/0.042 + CDS 509632 - 510351 829 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 492 235 Op 2 25/0.000 + CDS 510367 - 511209 796 ## COG1475 Predicted transcriptional regulators 493 235 Op 3 25/0.000 + CDS 511222 - 512001 759 ## COG1192 ATPases involved in chromosome partitioning 494 235 Op 4 1/0.156 + CDS 511979 - 512887 1063 ## COG1475 Predicted transcriptional regulators 495 235 Op 5 4/0.042 + CDS 512880 - 513140 323 ## COG4481 Uncharacterized protein conserved in bacteria 496 235 Op 6 . + CDS 513168 - 514268 1634 ## COG0012 Predicted GTPase, probable translation factor 497 235 Op 7 . + CDS 514279 - 515043 830 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria + Term 515074 - 515114 2.2 + Prom 515052 - 515111 3.2 498 236 Op 1 35/0.000 + CDS 515156 - 516457 1079 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 499 236 Op 2 35/0.000 + CDS 516408 - 516875 138 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 500 236 Op 3 . + CDS 516886 - 518727 212 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 + Term 518740 - 518783 8.6 + Prom 518736 - 518795 6.3 501 237 Op 1 40/0.000 + CDS 518831 - 519517 985 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 502 237 Op 2 . + CDS 519519 - 520682 799 ## COG0642 Signal transduction histidine kinase 503 237 Op 3 . + CDS 520717 - 522267 1575 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 504 237 Op 4 . + CDS 522288 - 523040 772 ## COG1794 Aspartate racemase + Term 523050 - 523093 5.3 + Prom 523070 - 523129 2.8 505 238 Op 1 10/0.000 + CDS 523183 - 523938 639 ## COG1349 Transcriptional regulators of sugar metabolism 506 238 Op 2 19/0.000 + CDS 523939 - 524853 1274 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 507 238 Op 3 . + CDS 524886 - 526850 2702 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 526874 - 526910 2.0 + Prom 526855 - 526914 3.7 508 239 Op 1 . + CDS 526935 - 527723 923 ## COG0561 Predicted hydrolases of the HAD superfamily 509 239 Op 2 42/0.000 + CDS 527789 - 528445 212 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 510 239 Op 3 . + CDS 528445 - 529236 887 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components + Term 529242 - 529278 4.0 + Prom 529260 - 529319 9.1 511 240 Op 1 3/0.052 + CDS 529346 - 530881 880 ## COG1620 L-lactate permease + Term 530888 - 530916 1.0 + Prom 530898 - 530957 6.8 512 240 Op 2 . + CDS 531055 - 532503 1016 ## COG1620 L-lactate permease + Term 532517 - 532569 1.1 513 241 Tu 1 . - CDS 532591 - 534378 1981 ## COG1164 Oligoendopeptidase F - Prom 534446 - 534505 12.2 + Prom 534422 - 534481 8.0 514 242 Tu 1 . + CDS 534547 - 535755 1159 ## COG1316 Transcriptional regulator + Term 535762 - 535790 2.3 - Term 535750 - 535778 2.3 515 243 Tu 1 . - CDS 535805 - 537370 1997 ## COG2132 Putative multicopper oxidases - Prom 537465 - 537524 9.4 + Prom 537513 - 537572 7.5 516 244 Op 1 . + CDS 537608 - 538114 417 ## LCRIS_01779 hypothetical protein 517 244 Op 2 . + CDS 538188 - 538814 662 ## FI9785_1632 hypothetical protein + Term 538819 - 538847 1.3 518 245 Op 1 . - CDS 538826 - 540379 634 ## LBA1747 hypothetical protein - Term 540395 - 540427 1.7 519 245 Op 2 . - CDS 540451 - 540741 334 ## LGAS_1701 hypothetical protein - Prom 540776 - 540835 9.1 + Prom 540715 - 540774 7.0 520 246 Op 1 . + CDS 540800 - 541384 508 ## COG0194 Guanylate kinase + Prom 541422 - 541481 7.0 521 246 Op 2 . + CDS 541554 - 542561 1473 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 542585 - 542614 1.4 - Term 542565 - 542611 5.1 522 247 Op 1 . - CDS 542617 - 543843 1043 ## LBA1739 hypothetical protein - Prom 543887 - 543946 8.1 523 247 Op 2 . - CDS 543965 - 545236 567 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 - Prom 545263 - 545322 9.8 + Prom 545222 - 545281 6.2 524 248 Op 1 36/0.000 + CDS 545409 - 546158 284 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 525 248 Op 2 . + CDS 546173 - 547972 1317 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 526 248 Op 3 . + CDS 548051 - 548500 573 ## COG0105 Nucleoside diphosphate kinase + Term 548508 - 548548 2.0 - Term 548495 - 548536 6.0 527 249 Op 1 . - CDS 548541 - 549191 619 ## COG0406 Fructose-2,6-bisphosphatase 528 249 Op 2 . - CDS 549207 - 549881 711 ## COG5549 Predicted Zn-dependent protease - Prom 549993 - 550052 8.9 + Prom 549978 - 550037 5.6 529 250 Tu 1 . + CDS 550065 - 552359 1907 ## COG3973 Superfamily I DNA and RNA helicases + Term 552367 - 552395 -0.1 + Prom 552369 - 552428 8.7 530 251 Op 1 1/0.156 + CDS 552452 - 553066 712 ## COG2357 Uncharacterized protein conserved in bacteria 531 251 Op 2 40/0.000 + CDS 553063 - 553734 600 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 532 251 Op 3 . + CDS 553741 - 554991 1299 ## COG0642 Signal transduction histidine kinase 533 251 Op 4 . + CDS 555063 - 555977 737 ## COG1072 Panthothenate kinase + Prom 556016 - 556075 2.4 534 251 Op 5 . + CDS 556103 - 556663 884 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 556672 - 556731 11.1 - Term 556670 - 556707 -0.1 535 252 Tu 1 . - CDS 556722 - 557633 906 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 557849 - 557908 7.3 + Prom 557690 - 557749 9.2 536 253 Tu 1 . + CDS 557874 - 559364 1394 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 559376 - 559422 -0.7 + Prom 559391 - 559450 6.4 537 254 Tu 1 . + CDS 559666 - 559986 318 ## gi|256851890|ref|ZP_05557278.1| predicted protein + Term 560003 - 560038 3.7 + Prom 560046 - 560105 10.2 538 255 Tu 1 . + CDS 560180 - 560932 1185 ## COG2461 Uncharacterized conserved protein + Term 560943 - 560986 7.0 + Prom 560970 - 561029 5.5 539 256 Op 1 . + CDS 561057 - 561968 935 ## COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold 540 256 Op 2 . + CDS 562024 - 562431 530 ## COG0789 Predicted transcriptional regulators 541 256 Op 3 . + CDS 562447 - 563385 1269 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 542 256 Op 4 . + CDS 563407 - 563790 481 ## gi|256851895|ref|ZP_05557283.1| predicted protein + Term 563799 - 563862 3.0 + Prom 563816 - 563875 5.5 543 257 Tu 1 . + CDS 564072 - 565139 763 ## COG3410 Uncharacterized conserved protein + Term 565153 - 565194 6.1 + Prom 565152 - 565211 4.3 544 258 Op 1 1/0.156 + CDS 565231 - 566496 1180 ## COG2195 Di- and tripeptidases 545 258 Op 2 . + CDS 566508 - 567284 704 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 546 258 Op 3 . + CDS 567284 - 568237 738 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 547 258 Op 4 . + CDS 568246 - 569121 784 ## FI9785_1579 extracellular/cell surface DNA-entry nuclease (EC:3.1.30.-) + Prom 569123 - 569182 10.4 548 259 Op 1 10/0.000 + CDS 569297 - 570382 1076 ## COG3839 ABC-type sugar transport systems, ATPase components 549 259 Op 2 38/0.000 + CDS 570382 - 571248 962 ## COG1175 ABC-type sugar transport systems, permease components 550 259 Op 3 . + CDS 571248 - 572072 666 ## COG0395 ABC-type sugar transport system, permease component 551 259 Op 4 . + CDS 572056 - 573339 1465 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 552 259 Op 5 2/0.104 + CDS 573391 - 574698 1747 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 574714 - 574753 7.0 + Prom 574748 - 574807 7.6 553 260 Tu 1 . + CDS 574851 - 576140 1321 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 576171 - 576228 5.2 + Prom 576172 - 576231 6.0 554 261 Tu 1 . + CDS 576254 - 577177 799 ## COG0598 Mg2+ and Co2+ transporters + Term 577180 - 577229 10.1 - Term 577174 - 577211 1.5 555 262 Tu 1 . - CDS 577228 - 578127 1078 ## COG2971 Predicted N-acetylglucosamine kinase + Prom 578120 - 578179 7.6 556 263 Tu 1 . + CDS 578282 - 579202 981 ## LBA1639 putative beta-lactamase (EC:3.5.2.6) + Term 579203 - 579236 3.1 + Prom 579231 - 579290 4.1 557 264 Op 1 3/0.052 + CDS 579314 - 579862 446 ## COG1309 Transcriptional regulator 558 264 Op 2 . + CDS 579876 - 583001 3044 ## COG2409 Predicted drug exporters of the RND superfamily + Term 583014 - 583054 4.1 + Prom 583021 - 583080 8.0 559 265 Tu 1 . + CDS 583113 - 584093 552 ## LBA1636 hypothetical protein + Term 584098 - 584132 5.3 - Term 584078 - 584128 2.5 560 266 Tu 1 . - CDS 584135 - 585517 1091 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 585600 - 585659 10.6 + Prom 585560 - 585619 11.9 561 267 Tu 1 . + CDS 585645 - 586142 748 ## COG3613 Nucleoside 2-deoxyribosyltransferase + Term 586144 - 586193 9.2 - Term 586135 - 586178 6.1 562 268 Op 1 . - CDS 586183 - 587034 1009 ## Ldb1886 XRE family transcriptional regulator 563 268 Op 2 . - CDS 587036 - 587830 661 ## COG0657 Esterase/lipase - Prom 587911 - 587970 11.0 + Prom 587887 - 587946 6.2 564 269 Op 1 . + CDS 588030 - 588635 406 ## COG0398 Uncharacterized conserved protein 565 269 Op 2 . + CDS 588632 - 589162 355 ## PROTEIN SUPPORTED gi|116630184|ref|YP_815356.1| acetyltransferase + Prom 589202 - 589261 2.2 566 270 Tu 1 . + CDS 589298 - 590710 1900 ## COG0172 Seryl-tRNA synthetase + Term 590721 - 590752 1.8 + SSU_RRNA 591306 - 592860 99.0 # EU559597 [D:1..1563] # 16S ribosomal RNA # Lactobacillus jensenii # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + LSU_RRNA 593405 - 594527 92.0 # Y17360 [D:1..3560] # 23S ribosomal RNA # Lactobacillus amylolyticus DSM 11664 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + LSU_RRNA 594624 - 595960 94.0 # Y17360 [D:1..3560] # 23S ribosomal RNA # Lactobacillus amylolyticus DSM 11664 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + 5S_RRNA 596018 - 596132 96.0 # EU184020 [D:4881..4998] # 5S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + TRNA 596145 - 596220 83.7 # Asn GTT 0 0 + Prom 596614 - 596673 2.4 567 271 Tu 1 . + CDS 596745 - 597305 151 ## lhv_1083 putative transposase + Term 597417 - 597445 -0.1 + TRNA 597334 - 597407 70.9 # Arg ACG 0 0 + Prom 597332 - 597391 76.3 568 272 Tu 1 . + CDS 597533 - 598912 1388 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 598914 - 598972 17.8 - Term 598902 - 598959 17.6 569 273 Op 1 4/0.042 - CDS 598961 - 599317 298 ## COG4687 Uncharacterized protein conserved in bacteria 570 273 Op 2 13/0.000 - CDS 599320 - 600237 1326 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 571 273 Op 3 13/0.000 - CDS 600261 - 601058 976 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 572 273 Op 4 . - CDS 601076 - 602071 1280 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 602102 - 602161 13.1 573 274 Tu 1 . + CDS 602511 - 603071 151 ## lhv_1083 putative transposase + Term 603134 - 603166 -1.0 - TRNA 603127 - 603199 79.6 # Thr CGT 0 0 + Prom 603090 - 603149 5.5 574 275 Tu 1 . + CDS 603288 - 603614 177 ## COG2076 Membrane transporters of cations and cationic drugs + Prom 603639 - 603698 7.7 575 276 Tu 1 . + CDS 603904 - 604629 953 ## LGAS_1547 aggregation promoting factor-like surface protein + Term 604666 - 604695 2.1 + Prom 604652 - 604711 11.3 576 277 Tu 1 . + CDS 604749 - 605318 617 ## COG0406 Fructose-2,6-bisphosphatase + Term 605496 - 605531 6.0 + TRNA 605416 - 605487 62.9 # Gln TTG 0 0 + Prom 605414 - 605473 77.7 577 278 Op 1 . + CDS 605583 - 606455 1019 ## COG0039 Malate/lactate dehydrogenases + Term 606563 - 606629 30.0 + TRNA 606537 - 606618 65.6 # Tyr GTA 0 0 + TRNA 606625 - 606696 55.8 # Gln TTG 0 0 578 278 Op 2 . + CDS 606901 - 607932 934 ## LCRIS_00514 hypothetical protein 579 278 Op 3 . + CDS 608024 - 608725 810 ## COG2188 Transcriptional regulators + Term 608728 - 608760 3.2 - Term 608716 - 608748 4.0 580 279 Tu 1 . - CDS 608751 - 609137 446 ## COG0615 Cytidylyltransferase - Prom 609163 - 609222 2.7 + Prom 609183 - 609242 5.8 581 280 Op 1 . + CDS 609263 - 610405 878 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 582 280 Op 2 . + CDS 610407 - 611840 911 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 583 280 Op 3 3/0.052 + CDS 611842 - 612576 784 ## COG1922 Teichoic acid biosynthesis proteins 584 280 Op 4 . + CDS 612576 - 613676 1027 ## COG0438 Glycosyltransferase 585 280 Op 5 . + CDS 613678 - 614373 650 ## COG3774 Mannosyltransferase OCH1 and related enzymes + Term 614399 - 614430 0.0 + Prom 614380 - 614439 10.2 586 281 Op 1 5/0.031 + CDS 614471 - 615946 1551 ## COG1488 Nicotinic acid phosphoribosyltransferase 587 281 Op 2 . + CDS 615946 - 616776 1154 ## COG0171 NAD synthase + Term 616898 - 616939 7.2 + Prom 616793 - 616852 4.9 588 282 Op 1 . + CDS 616949 - 619588 2952 ## COG0474 Cation transport ATPase + Term 619605 - 619643 1.1 589 282 Op 2 . + CDS 619658 - 620074 221 ## COG3091 Uncharacterized protein conserved in bacteria + Term 620188 - 620259 25.0 + TRNA 620151 - 620236 54.5 # Leu AAG 0 0 + Prom 620161 - 620220 80.4 590 283 Op 1 . + CDS 620464 - 620937 436 ## LBA1940 hypothetical protein 591 283 Op 2 . + CDS 620952 - 621596 704 ## COG1705 Muramidase (flagellum-specific) + Term 621613 - 621648 6.0 + Prom 621599 - 621658 8.7 592 284 Op 1 5/0.031 + CDS 621687 - 623951 2328 ## COG0210 Superfamily I DNA and RNA helicases 593 284 Op 2 4/0.042 + CDS 623989 - 625998 1973 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 594 284 Op 3 1/0.156 + CDS 626007 - 627155 1026 ## COG4851 Protein involved in sex pheromone biosynthesis 595 284 Op 4 31/0.000 + CDS 627168 - 627470 442 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 596 284 Op 5 21/0.000 + CDS 627470 - 628909 398 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 597 284 Op 6 2/0.104 + CDS 628913 - 630343 2012 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 598 284 Op 7 . + CDS 630372 - 631289 1004 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 631293 - 631351 9.4 - Term 631280 - 631335 17.1 599 285 Op 1 . - CDS 631343 - 632608 1379 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance 600 285 Op 2 . - CDS 632624 - 634714 1839 ## COG1982 Arginine/lysine/ornithine decarboxylases - Prom 634894 - 634953 6.8 + Prom 634721 - 634780 6.6 601 286 Tu 1 . + CDS 634932 - 636395 1347 ## COG0531 Amino acid transporters + Term 636396 - 636462 12.1 + Prom 636433 - 636492 8.3 602 287 Op 1 . + CDS 636527 - 637498 1061 ## COG1073 Hydrolases of the alpha/beta superfamily 603 287 Op 2 . + CDS 637512 - 638384 398 ## LAR_1792 hypothetical protein 604 287 Op 3 . + CDS 638384 - 639547 1069 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 605 287 Op 4 . + CDS 639534 - 639728 58 ## gi|297205583|ref|ZP_06922979.1| conserved hypothetical protein 606 287 Op 5 . + CDS 639713 - 640393 721 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 640405 - 640455 4.6 - Term 640399 - 640437 6.2 607 288 Tu 1 . - CDS 640458 - 641090 646 ## COG0670 Integral membrane protein, interacts with FtsH - Prom 641231 - 641290 8.3 - Term 641270 - 641302 2.5 608 289 Tu 1 . - CDS 641313 - 642680 1284 ## COG1757 Na+/H+ antiporter - Prom 642906 - 642965 10.7 + Prom 642769 - 642828 2.3 609 290 Op 1 . + CDS 642938 - 644383 1723 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 610 290 Op 2 . + CDS 644384 - 644980 393 ## gi|256852246|ref|ZP_05557632.1| predicted protein + Term 644991 - 645042 8.2 - Term 644987 - 645019 2.5 611 291 Tu 1 . - CDS 645031 - 647586 1646 ## COG4485 Predicted membrane protein - Prom 647606 - 647665 4.9 - Term 647667 - 647707 4.1 612 292 Tu 1 . - CDS 647714 - 649624 1978 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 649854 - 649913 6.6 + Prom 649689 - 649748 6.0 613 293 Tu 1 . + CDS 649798 - 650439 774 ## COG2344 AT-rich DNA-binding protein + Term 650474 - 650527 9.1 + Prom 650497 - 650556 4.5 614 294 Op 1 41/0.000 + CDS 650624 - 650908 348 ## COG0234 Co-chaperonin GroES (HSP10) 615 294 Op 2 . + CDS 650936 - 652561 1599 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 652583 - 652620 6.4 + Prom 652604 - 652663 10.5 616 295 Tu 1 . + CDS 652684 - 653541 864 ## LCRIS_00802 hypothetical protein + Term 653615 - 653658 5.4 + Prom 653641 - 653700 5.5 617 296 Op 1 . + CDS 653720 - 654553 580 ## LJ1297 hypothetical protein + Prom 654556 - 654615 11.8 618 296 Op 2 . + CDS 654645 - 656210 1103 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 656243 - 656282 -0.8 + Prom 656237 - 656296 8.2 619 297 Op 1 . + CDS 656368 - 658449 1734 ## COG1479 Uncharacterized conserved protein 620 297 Op 2 27/0.000 + CDS 658504 - 660036 1726 ## COG0286 Type I restriction-modification system methyltransferase subunit 621 297 Op 3 . + CDS 660026 - 660565 508 ## COG0732 Restriction endonuclease S subunits - Term 660311 - 660357 1.1 622 298 Tu 1 . - CDS 660562 - 661167 400 ## Mmol_0228 restriction modification system DNA specificity domain protein - Prom 661251 - 661310 7.1 + Prom 661189 - 661248 7.6 623 299 Tu 1 . + CDS 661278 - 664388 2900 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases + Term 664478 - 664524 -0.6 + Prom 664556 - 664615 9.2 624 300 Op 1 6/0.000 + CDS 664646 - 667228 2846 ## COG0249 Mismatch repair ATPase (MutS family) 625 300 Op 2 1/0.156 + CDS 667228 - 669096 1948 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 626 300 Op 3 29/0.000 + CDS 669099 - 669680 723 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 627 300 Op 4 1/0.156 + CDS 669712 - 670722 980 ## COG2255 Holliday junction resolvasome, helicase subunit 628 300 Op 5 . + CDS 670791 - 671165 550 ## COG1862 Preprotein translocase subunit YajC + Prom 671167 - 671226 5.6 629 301 Op 1 . + CDS 671280 - 672707 1686 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 630 301 Op 2 . + CDS 672707 - 673822 894 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 631 301 Op 3 . + CDS 673886 - 674845 709 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 632 301 Op 4 1/0.156 + CDS 674838 - 676196 1570 ## COG0513 Superfamily II DNA and RNA helicases + Prom 676343 - 676402 4.5 633 302 Op 1 4/0.042 + CDS 676423 - 679059 3329 ## COG0013 Alanyl-tRNA synthetase 634 302 Op 2 6/0.000 + CDS 679115 - 679372 412 ## COG4472 Uncharacterized protein conserved in bacteria 635 302 Op 3 7/0.000 + CDS 679372 - 679818 443 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 636 302 Op 4 . + CDS 679802 - 680116 483 ## COG3906 Uncharacterized protein conserved in bacteria + Term 680122 - 680155 2.0 637 302 Op 5 3/0.052 + CDS 680165 - 682525 2930 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 682538 - 682597 2.0 638 302 Op 6 . + CDS 682617 - 682928 517 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 682932 - 682987 13.1 - Term 682920 - 682975 15.5 639 303 Tu 1 . - CDS 682976 - 683371 452 ## lhv_0448 hypothetical protein + Prom 683243 - 683302 7.3 640 304 Op 1 3/0.052 + CDS 683460 - 684257 840 ## COG0796 Glutamate racemase 641 304 Op 2 . + CDS 684257 - 684874 424 ## PROTEIN SUPPORTED gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase 642 304 Op 3 . + CDS 684885 - 685064 301 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog + Term 685069 - 685102 5.4 - Term 685057 - 685090 5.4 643 305 Tu 1 . - CDS 685093 - 685914 838 ## COG0668 Small-conductance mechanosensitive channel - Prom 685982 - 686041 3.3 + Prom 685946 - 686005 7.0 644 306 Op 1 . + CDS 686030 - 686455 534 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 645 306 Op 2 . + CDS 686477 - 686806 483 ## FI9785_505 hypothetical protein + Term 686807 - 686854 7.2 - Term 686636 - 686672 0.6 646 307 Tu 1 . - CDS 686846 - 687958 1400 ## COG0006 Xaa-Pro aminopeptidase - Prom 687990 - 688049 8.1 + Prom 687926 - 687985 10.8 647 308 Tu 1 . + CDS 688107 - 689102 1065 ## COG1609 Transcriptional regulators + Term 689109 - 689158 13.4 - Term 689095 - 689146 14.6 648 309 Op 1 . - CDS 689147 - 690553 2105 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 649 309 Op 2 . - CDS 690610 - 691989 1039 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 692044 - 692103 4.8 + Prom 691963 - 692022 5.7 650 310 Op 1 . + CDS 692069 - 692386 313 ## LGAS_0441 hypothetical protein 651 310 Op 2 2/0.104 + CDS 692396 - 693784 1365 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 652 310 Op 3 1/0.156 + CDS 693771 - 694328 330 ## COG4470 Uncharacterized protein conserved in bacteria 653 310 Op 4 3/0.052 + CDS 694335 - 695099 964 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 654 310 Op 5 . + CDS 695096 - 695701 575 ## COG4478 Predicted membrane protein + Term 695704 - 695752 9.1 - Term 695691 - 695739 9.1 655 311 Tu 1 . - CDS 695747 - 696598 1045 ## LAF_0297 two-component response regulator - Prom 696667 - 696726 8.0 + Prom 696648 - 696707 5.8 656 312 Op 1 8/0.000 + CDS 696863 - 697864 1591 ## COG0078 Ornithine carbamoyltransferase 657 312 Op 2 2/0.104 + CDS 697878 - 698792 1222 ## COG0549 Carbamate kinase 658 312 Op 3 3/0.052 + CDS 698839 - 700065 985 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 + Term 700071 - 700114 7.4 659 313 Tu 1 4/0.042 + CDS 700122 - 701540 1803 ## COG0531 Amino acid transporters + Term 701560 - 701603 6.4 + Prom 701574 - 701633 9.6 660 314 Tu 1 . + CDS 701657 - 703084 1005 ## COG0531 Amino acid transporters + Term 703092 - 703119 0.1 - Term 703080 - 703107 0.1 661 315 Tu 1 . - CDS 703180 - 704625 1859 ## COG0366 Glycosidases - Prom 704666 - 704725 7.6 + Prom 704597 - 704656 8.5 662 316 Tu 1 . + CDS 704767 - 705717 717 ## COG1609 Transcriptional regulators + Term 705733 - 705769 5.1 + Prom 705842 - 705901 7.8 663 317 Op 1 . + CDS 705935 - 708121 2607 ## COG3345 Alpha-galactosidase 664 317 Op 2 . + CDS 708154 - 709557 1843 ## COG2211 Na+/melibiose symporter and related transporters + Term 709561 - 709632 10.6 665 318 Tu 1 . - CDS 709591 - 710628 1024 ## COG1609 Transcriptional regulators - Prom 710730 - 710789 7.1 + Prom 710731 - 710790 9.8 666 319 Op 1 35/0.000 + CDS 710814 - 712064 1192 ## COG1653 ABC-type sugar transport system, periplasmic component 667 319 Op 2 38/0.000 + CDS 712085 - 712960 1037 ## COG1175 ABC-type sugar transport systems, permease components 668 319 Op 3 21/0.000 + CDS 712975 - 713808 806 ## COG0395 ABC-type sugar transport system, permease component 669 319 Op 4 . + CDS 713830 - 714939 1579 ## COG3839 ABC-type sugar transport systems, ATPase components - Term 714968 - 715034 5.6 670 320 Tu 1 . - CDS 715099 - 716121 658 ## COG1609 Transcriptional regulators - Prom 716157 - 716216 8.3 + Prom 716322 - 716381 34.8 671 321 Tu 1 . + CDS 716557 - 722832 8052 ## LGAS_0143 adhesion exoprotein - Term 723149 - 723182 5.1 672 322 Tu 1 . - CDS 723190 - 723807 620 ## gi|256852184|ref|ZP_05557570.1| predicted protein - Prom 723840 - 723899 10.3 + Prom 723834 - 723893 8.8 673 323 Tu 1 . + CDS 724121 - 724651 455 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 674 324 Tu 1 . - CDS 724806 - 725366 151 ## lhv_1083 putative transposase - Prom 725438 - 725497 2.4 + Prom 725720 - 725779 8.8 675 325 Tu 1 . + CDS 725836 - 727329 1566 ## COG3104 Dipeptide/tripeptide permease + Term 727337 - 727367 2.0 - Term 727323 - 727353 2.0 676 326 Op 1 . - CDS 727381 - 728271 1155 ## COG1250 3-hydroxyacyl-CoA dehydrogenase 677 326 Op 2 . - CDS 728281 - 729108 1039 ## LSL_0135 acetoacetate decarboxylase (EC:4.1.1.4) - Prom 729146 - 729205 11.2 + Prom 729084 - 729143 6.5 678 327 Tu 1 . + CDS 729308 - 729958 723 ## COG0778 Nitroreductase + Term 729968 - 730011 6.9 + Prom 729978 - 730037 7.9 679 328 Op 1 . + CDS 730099 - 730767 726 ## COG0518 GMP synthase - Glutamine amidotransferase domain + Term 730776 - 730821 8.9 680 328 Op 2 . + CDS 730842 - 731822 1003 ## COG0673 Predicted dehydrogenases and related proteins + Term 731836 - 731880 7.1 + Prom 731855 - 731914 6.0 681 329 Tu 1 . + CDS 731944 - 736131 4600 ## COG3513 Uncharacterized protein conserved in bacteria + Term 736146 - 736196 10.7 + Prom 736274 - 736333 5.8 682 330 Op 1 4/0.042 + CDS 736361 - 737269 652 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 683 330 Op 2 . + CDS 737247 - 737552 241 ## COG3512 Uncharacterized protein conserved in bacteria 684 330 Op 3 . + CDS 737549 - 738217 601 ## LSL_0100 CRISPR-associated Csn2 family protein + Term 738358 - 738406 -0.8 + Prom 739083 - 739142 8.0 685 331 Tu 1 . + CDS 739348 - 741732 2731 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Term 741754 - 741788 6.1 + Prom 741735 - 741794 8.6 686 332 Op 1 . + CDS 741825 - 742235 244 ## COG0242 N-formylmethionyl-tRNA deformylase + Prom 742238 - 742297 2.6 687 332 Op 2 . + CDS 742317 - 744002 1052 ## LAR_0278 hypothetical protein + Term 744007 - 744045 1.5 - Term 743996 - 744034 1.5 688 333 Tu 1 . - CDS 744040 - 744684 714 ## LGG_01093 hypothetical protein - TRNA 744844 - 744927 54.4 # Leu CAG 0 0 689 334 Op 1 . + CDS 745000 - 745845 342 ## PROTEIN SUPPORTED gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 690 334 Op 2 . + CDS 745857 - 747125 1039 ## COG1686 D-alanyl-D-alanine carboxypeptidase 691 335 Tu 1 . + CDS 747201 - 749297 2468 ## COG4990 Uncharacterized protein conserved in bacteria + Term 749428 - 749476 -0.6 + Prom 749471 - 749530 3.9 692 336 Op 1 . + CDS 749557 - 751233 2188 ## COG0018 Arginyl-tRNA synthetase 693 336 Op 2 . + CDS 751303 - 752214 1233 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 752237 - 752274 5.7 694 337 Tu 1 . - CDS 752242 - 753105 1277 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family - Prom 753176 - 753235 6.0 + Prom 753108 - 753167 6.5 695 338 Op 1 . + CDS 753190 - 755247 2236 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 696 338 Op 2 2/0.104 + CDS 755259 - 755621 617 ## COG3679 Uncharacterized conserved protein 697 338 Op 3 5/0.031 + CDS 755624 - 756847 1017 ## COG0420 DNA repair exonuclease 698 338 Op 4 3/0.052 + CDS 756828 - 759242 1971 ## COG4717 Uncharacterized conserved protein 699 338 Op 5 . + CDS 759252 - 760226 970 ## COG3481 Predicted HD-superfamily hydrolase + Term 760229 - 760280 10.1 - Term 760212 - 760268 9.0 700 339 Tu 1 . - CDS 760283 - 761191 1175 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 761226 - 761285 5.8 - Term 761343 - 761378 3.1 701 340 Op 1 . - CDS 761388 - 761741 439 ## gi|256852156|ref|ZP_05557542.1| predicted protein 702 340 Op 2 . - CDS 761773 - 762204 454 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases + Prom 762116 - 762175 9.5 703 341 Op 1 7/0.000 + CDS 762289 - 763032 244 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 704 341 Op 2 . + CDS 763025 - 764209 823 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 705 341 Op 3 . + CDS 764218 - 764871 804 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 706 341 Op 4 2/0.104 + CDS 764933 - 765253 382 ## COG0526 Thiol-disulfide isomerase and thioredoxins 707 341 Op 5 . + CDS 765272 - 765919 768 ## COG0073 EMAP domain + Term 765925 - 765984 12.6 + Prom 766028 - 766087 9.0 708 342 Tu 1 . + CDS 766110 - 766637 184 ## LGAS_1300 hypothetical protein + Term 766657 - 766686 1.4 + SSU_RRNA 767263 - 767887 99.0 # EU559597 [D:1..1563] # 16S ribosomal RNA # Lactobacillus jensenii # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Predicted protein(s) >gi|297149550|gb|ACGQ02000001.1| GENE 1 1166 - 2110 223 314 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 272 2 276 306 90 28 1e-16 YDLAIIGAGPVGLFSAYFAHLHGLKVVLLESLPELGGQPAALYPNKVIQDIPVFKDIKSF QLTEKLCSNLSSDVTIICNYKVENIIHEDSQFIINDDLISKTVLITTGNGAFKPKAFPLP IPTSIDNKLSYFVKNPQDYQNKEVAVLGGGDSALDWALELSQYAKVSLIHRRNQFRGLES NVEKVKHNSQISVLTPYLPANLIDNSGRCELSLKKVGTDETKTIVFDNLIVAYGFRANNR FVKKWGIELENDLIKVDRKMETSVKGIFAAGDSVGYDGRVPIIGIGFGEAQVAITSIMQT IFPNKKMTIHSTSI >gi|297149550|gb|ACGQ02000001.1| GENE 2 2120 - 2641 581 173 aa, chain + ## HITS:1 COG:BS_yutG KEGG:ns NR:ns ## COG: BS_yutG COG1267 # Protein_GI_number: 16080281 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Bacillus subtilis # 1 158 1 160 166 188 63.0 4e-48 MTENQEHFYQHTIALLNERGVTLKDIEDLVYYLQKDYIHPLTHEAMQESIEKVLQKREVQ NSIITGIELDKLAEKKQLSEPLQSIMENDEPLYGCDEVLTFSITNLYGSIGFTNYGYIDK TKPGILKWLNDKSTGKINVFLDDLVGAVAAAAASRLAHTQTDLEDDSIYSRKD >gi|297149550|gb|ACGQ02000001.1| GENE 3 2644 - 3294 522 216 aa, chain + ## HITS:1 COG:lin0035 KEGG:ns NR:ns ## COG: lin0035 COG0586 # Protein_GI_number: 16799114 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Listeria innocua # 3 212 7 216 219 196 53.0 3e-50 MGLISFILHIDDHLVNIVNQFGNYTYLILFAIIFIETGLVIFPFLPGDSLIFAASAMAAN TKYGLDIWLVYLAVVIAAILGDSANYEVGAWSTRAGSKHAWFNKLINEKNRYAAEKFFER HGSITIVIGRFIPFIRTFVPFISGGSKMHYGHFITYNILGGILWTGLFSIIGYFFGNLPI VKTHFSLIVIAIILVSVVPIAIVALKKKMTLKKGFH >gi|297149550|gb|ACGQ02000001.1| GENE 4 3310 - 4545 1861 411 aa, chain - ## HITS:1 COG:L0082 KEGG:ns NR:ns ## COG: L0082 COG0112 # Protein_GI_number: 15672583 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Lactococcus lactis # 7 410 12 415 415 521 66.0 1e-148 MKYAEKDPQLWDAIAQEEKRQQHTIELIASENIVSKAVEEAQGSVLTNKYAEGYPGKRYY GGCKYIDIAEQLAIDHAKKLFGAAYANVQPHSGSQANAAVYQALLKPGDIILGMGMDAGG HLTHGAKVNFSGKMYKTYAYGLNPTTERLDYDAIRKQALEIKPQIIVAGASAYSQIIDWD KFREIADEVGAYLMVDMAHIAGLVATGYHPNPVPVADVVTTTTHKTLRGPRGGMILSRSE ELGKKFNSAVFPGSQGGPLEHVIAAKAQAFYEDLQPQYKTYIGQVVKNAKAMAEVLNDSD TIRVVTGGTANHLLVLDITKTGLTGKDAQNLLDSVMITTNKEAIPNDHRSPFITSGLRIG TPAITSRGFDEEDSRAVAKLIIDALNNSDNQAVLSKVAEGVQKLVEKHPID >gi|297149550|gb|ACGQ02000001.1| GENE 5 4597 - 5976 1258 459 aa, chain - ## HITS:1 COG:lin0882 KEGG:ns NR:ns ## COG: lin0882 COG3428 # Protein_GI_number: 16799955 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 59 456 66 487 494 127 26.0 5e-29 MTKHLSPLAMLFFLKDQVRNKIGILPAIIIGCNYLNFLKGNYLIQIGSFVALILLLTFLE YFFFTYEISEKELIIRSGVFEKKEKHIPYSRIQTIHTKYPFWMEPLKQTKVILETANQDD EGTIVLRVVSQAELERLQDAMKIADVATILEEPSGYYINNRDLAIYTITSPGVIAGALMV YSLYEKVADFDIKIDNSLPMIILFLLIGIGLTFFNTWQRLFNFSIHNEQNQLKSKSGLFS KTQMTLPVKRIQGIIFEATYLRYITKLVSIQAIASSKLTDEEEGNVNLIPVVKRKEASEV LHELLPTWPSKVKNLHRLSSAGKRSLFIYRFNWLLITSVIINVISYFFLSGAFVWILGLN LLVGVYSLVASVILICSSGINYDDQYLYFGTKRYFKIINAIFPREKIQYLKLTQSVWMKK KKLMHIELEVMDKHFGYQVRVRYLPEEVAKNVQEWFMEK >gi|297149550|gb|ACGQ02000001.1| GENE 6 5969 - 6454 453 161 aa, chain - ## HITS:1 COG:lin0881 KEGG:ns NR:ns ## COG: lin0881 COG3402 # Protein_GI_number: 16799954 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 156 6 156 160 72 28.0 4e-13 MQNKLPNEIKKVWLAENILEVIGTMIGFGIVYFVLITFVAKNLVNLFLMIWAILFALVIV FDIVQILLIPYVYNFWTYQITGEYVVLHKGYIFRKQITVPLARLQTVTLEAGPLLRWQHL TELHLHTASSSEKISGLKLEDAKLFRKQLLNIIQKAGDKHD >gi|297149550|gb|ACGQ02000001.1| GENE 7 6530 - 9049 2174 839 aa, chain - ## HITS:1 COG:DRA0188 KEGG:ns NR:ns ## COG: DRA0188 COG0178 # Protein_GI_number: 15807854 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Deinococcus radiodurans # 12 830 96 918 922 498 36.0 1e-140 MNENTTVGPQAIEVRGANINNLQNIDIDIPLHKFVAITGPSGAGKSSLAMGILYAEGSRR YLEALSTYTRRRITQAKQVGVKEIKHIPSAIALRQRPSIPSERSTVGSMTEIYNVIRLIF SRLGSPVCPNGHRIAPSLSISQAMDNSGEKMGKINCPTCGVEFSAKSAEDFAYNSAGACP KCHGTGQVQTLDPEKIIPDDNKSINEGAVASWRLPGRNFMNTVAATLGVRLDVPFKDLTP KEKNIVLYGKKKKYAVDFHTSTGRVYSTDGTLYENAYEAVYASLKTAKTERSLVRINKFF KFSTCPLCHGNRLNPELLKQIVAGKNIAQVANLTLGELSKFEKKTLNWLPDNVQAMAKVI FKDLDDNLAPLLDLGLDYLTLARSGNTLSTGELQRIQLARTLRTETTGVLYVLDEPTIGL HPDNVAGLIKILRRLISQGNSLVVVDHEVSVIEAADWVIEIGPQAGEKGGKVVAQGKPGE LINNPKSMIGKYLAGNAKITNLKKQSVNLAHATQLSVSNYFNLHDITIAVPDEKLTAITG FSGAGKTSLILDSLVPAIKNPQHLPAQVTNITTSIKTVVSVDAKPVGKNTRSCVATYTSI MDSLRRLFASLPASKAENLKMSAFSYNNKQGACPTCQGLGSISLDLQYLPDMEQVCPTCH GRRFASKILKIKWHNYSIADILELSVNDAISIFAQEKKILRELDLLKQVGLGYLHLGEST PELSGGEAQRLKLTKHLLKSCKQTLFVFDEPSIGLHPSDVQILLKVLRHLQAKGATIIII THDLDIMTNCDYLIDLGPKGGINGGQVMATGNPFALVNSQKNSLTLQYLRQHFVNYHLI >gi|297149550|gb|ACGQ02000001.1| GENE 8 9132 - 9797 567 221 aa, chain - ## HITS:1 COG:CAC0748 KEGG:ns NR:ns ## COG: CAC0748 COG0778 # Protein_GI_number: 15894035 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Clostridium acetobutylicum # 6 211 2 224 241 82 26.0 5e-16 MTSKSNLIEAINLRHTVRRYKPTEIDFDNRKFILERVNKLNSSYNLMMRAVFDDDSALSL LGKFVLSKNARNFIVLAGKDNQQEQLGYCAADLMLYIQTLGLNSWFVGGTYNRQKLENKY HEPVWGIVVLGYGLDSGKKHACKSLNQVSVSDNDVEWYKKGVVAALKAPTALNKQNFKFI LANGVVELEVKESSYAKLELGILRYFFELASGKKIEKKIIV >gi|297149550|gb|ACGQ02000001.1| GENE 9 9872 - 10288 454 138 aa, chain - ## HITS:1 COG:L12334 KEGG:ns NR:ns ## COG: L12334 COG1396 # Protein_GI_number: 15671989 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 3 82 2 82 107 62 41.0 2e-10 MDQINERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSQLYDVSID YIVGNKNFDKKEETQETSKQNLLKKQRAKRALKGILWGTASMLAAFGMEVLKQDSWVIAI FAAVPLHFLINYYIDNKG >gi|297149550|gb|ACGQ02000001.1| GENE 10 10455 - 11915 1256 486 aa, chain - ## HITS:1 COG:PA1194 KEGG:ns NR:ns ## COG: PA1194 COG0531 # Protein_GI_number: 15596391 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Pseudomonas aeruginosa # 1 453 1 438 472 275 38.0 2e-73 MKQEVKNKVGLGGLTGLIVGGTIGSGIFALPATLTAGANPEGILIGWTIVAIGMFSLAGV YRNLTLQQPKIDDGIHGWSKNLFGDMGGFIANYGHGIGDAIGNASYLTVIFSALGGFSFL QIFGNGTTWPSIIGASILLWIVTGLVLKGIKTSTVMNNITTIAKVIPIAMFIILAILNFS PHTFLAHFASTNVFDVATNHWMHVSIFDQSKSVLLSAMWTLIGIESGTIFATRAKKLSDV AKATNLGAMFVIVLLVGTSVLSLGLLAPNQISKLHDPSVAGLMENMVGPWGGWLIYICLI VSVVGALIAWVNLCSEQLRVAGRGGSGSKWLAELNEAEAPKNALLVTTGLTQVLMIIAGL YSAGYAVLLKFSTSMAIVPYFFASLYALKSVICGIGFKDLPTYKRITSAIYAVLATAFTL FMIFGAGLRYLLLGAIIWMTGFGFFYQGKKEKGQRLSKVEWLWWGVIAVMALAGILGLLT GTLQIK >gi|297149550|gb|ACGQ02000001.1| GENE 11 12187 - 13365 443 392 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 376 46.0 1e-104 MNDFTKNIAQALLNQDKINDLLRKELQQAVNDLLEAELTAFLGYDPYARAGWNTGNSRNG AYFRKVDTQFGEIKIQVPRDRNGMFHQHTLPDYKQHSNVLESMIIKLYSKGVTTREIADL IEKMYGSHYSPAQVSNISKQMIPKVEAYHQRKFSDKFFCVYLDATYIPLRRITFDREAVY IAIGIKPNGHKEVIDYRIAPSENVENWTEMLQDMKSRGLEQVELFLSDGVVGMKTVLEQT YPKAHFQRCLVHVMRNICAKVRVDDRETIMNEFKQIHQQPNKEAAIKVLHAFYDKWNRAY NHVIRNLKEIEPDLLVFYSYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLNTF IGIQAMSYNERYFNRIHKGFGQVQDTLESYFD >gi|297149550|gb|ACGQ02000001.1| GENE 12 13567 - 13977 278 136 aa, chain - ## HITS:1 COG:L12334 KEGG:ns NR:ns ## COG: L12334 COG1396 # Protein_GI_number: 15671989 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 4 81 3 80 107 60 42.0 7e-10 MNNLNERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLD YLVGNSKSESIKINEQILRKKRNALQVILWSACVAIVLLLIMFFEDGRAGILFIFAIPLS AWINYYYQCQKSKQKN >gi|297149550|gb|ACGQ02000001.1| GENE 13 14124 - 14495 228 123 aa, chain + ## HITS:1 COG:no KEGG:LCK_00431 NR:ns ## KEGG: LCK_00431 # Name: not_defined # Def: HMG-I and HMG-Y, DNA-binding: regulatory protein, TetR # Organism: L.citreum # Pathway: not_defined # 1 120 1 120 131 105 45.0 6e-22 MGRKKKYNSNEVIEAITSVFLQYGYEATSLDTLVKATGLLRGSLYSEFGSKRGMFLTVLR NNMKQAKDGEKTTHLMLVAMLELSRRDKEIHALIQDWCQSFSNKELELLLGKKLLSIAKI ERY >gi|297149550|gb|ACGQ02000001.1| GENE 14 14498 - 14842 269 114 aa, chain + ## HITS:1 COG:no KEGG:LCK_00432 NR:ns ## KEGG: LCK_00432 # Name: not_defined # Def: hypothetical protein # Organism: L.citreum # Pathway: not_defined # 1 113 1 113 117 115 46.0 3e-25 MRNKLSIENNNLIVEPQGLDKLWSLKNKLVIPLKHIAGATLDNTILFDKKGLRSPGTAAL GYYAGSFHLNNEINFYNARKGSDIIVIQLKEEHYNRLILEIDNPRQWIDKLNNI >gi|297149550|gb|ACGQ02000001.1| GENE 15 14879 - 15817 958 312 aa, chain - ## HITS:1 COG:L0194 KEGG:ns NR:ns ## COG: L0194 COG0276 # Protein_GI_number: 15673549 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Lactococcus lactis # 2 311 4 309 314 270 45.0 2e-72 MKKGILLVNLGTPKSANPKDVREFLKRFLGDERVIKMPRLLWKAILHGIILNTRPKKSAA MYEKIQTEAGFPLLRYTEMQRDNVAKLFPDYLVEYGMSYSAPSIETSLDKLLDQGVDDLT IVPMYPQYSGTTVGSVFDSVMNYFLKTDKVVNLHFIRSYYDNEIYANYFAPKIKQALAKN AIDAIVISYHGIPLSYKQQGDNYDEECTKTTEAIMAKVDTNIPVYQTYQSKFGPGEWLTP ATSDTLKKLPSEGYKKVLILAPGFVVDCLETIEELESENKGYFLNAGGEEFHYLAPFNGD EDFAKLVKSLIV >gi|297149550|gb|ACGQ02000001.1| GENE 16 15830 - 17179 1225 449 aa, chain - ## HITS:1 COG:MA2050 KEGG:ns NR:ns ## COG: MA2050 COG0534 # Protein_GI_number: 20090897 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 4 427 7 434 468 209 31.0 9e-54 MNTLFAKAPIKQVYFKLAFPVVLGMITTMVYNLVDTMFVAKTGDANLVAAVTISTPLINF LIAFSDILGLGGSSVISRLFGEKKYEEARRVSSFSIYAGIITSFILTAILFVFEKQILWL FGARASTYADAAEFYRVLAIGAVFIMCSLIPQNLLRTEGLAVEAMIGSISGTVVAIILDP VFLFVLKMGATGVATANIIGFIVTDSVLFYYMIKRAKFINAKVKFMKVKSHLFNEVIAIG IPSSVNQFANTFGMALLNSTLAAYGAKEVAAMGITQKIYSIVILAIVGFTFGSQPLIGFN YGAKNWQRLKEVLRFDIFVQVVYAIVSALILIVFAHQIVGLFMNDSLIINSGSYMLLATL ITTPLAGIIMVYTTVFQSIGNAWGALIMSLARQGIVYLLAMIVLQRFLGLHGIVWAQAAS DVITFTIGYVIFSKSLNLKAKIMKEQNNN >gi|297149550|gb|ACGQ02000001.1| GENE 17 17288 - 17437 111 49 aa, chain - ## HITS:1 COG:no KEGG:GALLO_1419 NR:ns ## KEGG: GALLO_1419 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus # Pathway: not_defined # 1 49 45 93 95 67 67.0 1e-10 MENPNPAYVWKVRDYLEDMLKREGKEVYPWSKMAHYSANRWFSYDTPGR >gi|297149550|gb|ACGQ02000001.1| GENE 18 17692 - 18030 209 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|297204991|ref|ZP_06922387.1| ## NR: gi|297204991|ref|ZP_06922387.1| acetyl-coA carboxylase carboxyl transferase subunit beta [Lactobacillus jensenii JV-V16] # 1 112 1 112 112 167 100.0 2e-40 MPEGTKVRWGEGAEEIAKNLKPGESAKVPVVITIPGEGEKTVEITITRPATATNNSQTNA NNSNENKAHNISKVTANKLPQTGENSATLSALGAALVGIAGLGLFLKKKKED >gi|297149550|gb|ACGQ02000001.1| GENE 19 18718 - 27219 12861 2833 aa, chain - ## HITS:1 COG:no KEGG:LJ0621 NR:ns ## KEGG: LJ0621 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1010 1572 2183 2715 2789 211 35.0 3e-52 MLSKNNKKMRAMKMATDRQQHFSLRKLSVGLVSVLMGTTVFLTSQSITAKADTLPVTTSS TSSSADNTSQEASSESSATNESKVASSSSQSTESEASTSQSSNNSQNTSKDEVATNQATS AESSNTDSQVANNNTTELKVSGTERAANTDALAESKATNDASVQEVSNWNDFDRALRNST ISTININADFSSNNYQNNVSRYNIASRTLTINGNGHTVDMGSIGYYMNPAGNKTADWTIN NGTFFSKSATGPFAFLTGYDRNSKIAEASGAVHRITLNDVTIYAGQAAYAVNAEIVLSGT DNLNSGASYYSTLANKTIYTETGGNRSGVEAQWITISPNANVTVNTDHGAVLTTERSDSN NRKIEVGENATLNANYLHTTYGLPDNGTKVAVLSNGADYGTVIFHAGSNATFSMPNNRVT NLNGNGNSSWGDGSVLYLGAANTTIEKGATVTLNNPKEAQTDNSIFLRNDGTQLNVFGKL IINDGARDYTLRMDNKVTLNVGQKLSDSDFSTDNGQMIINRDGDFYLNNDGGALSLWGPI TVNVNSGARLEVNSTGINNVRGSGNSQALLRVGGSSKLNVYKRGTFILRDSSNGTLSLVN QYGANGNFNFDNTADVIFDISQNGSKNSRIFSLPGQLVATNDSVRAMLNPTSSITNMGTF KRVQLPLNGSGTITGTTLHSEYQQAGYNNIVSINNAIRNGQLRYLEFSTREVNKPSITGE GQGFTDNGAQLKGSVVDESTDTGAVAVVYDSNNNELGRGNVDDNGNFTINLAKPLLNKEG VRVRIETPRGAGAFATTVAPLGPTVKSPITVGRDQNLVGQDASQYITNKDAISNLKPGST TFTDSDYEPTFSKATWKSVDFDKKQGVITVTYKDNTTTDLTVDLNVKDVITDADKYTPEA GTIKVDNSHKLDGDDAYDAITNHDSLPADKTTGYNWVVDDTHPAVDTTKPGDHKGYVQVT YEDGSKSDPVEVTVHVIGDNEKYNAVSKTLNVKKNDTVNPEDLIANRDGDASQDGKTYTK LPDGTKYDWQGTPISTKDGGVKRGQVKVTYPDGTTQVVDVTVNVYEDANVSTVVGKDINA KLNEDLTNRAIDAIDKDKSTNLPTDSSAYTWASKVDTSTSGDKPATVVVTYPDGSQNSVN VTVHVISDADKYKIITQDITVPINTDLTNRAKDGIGNADKAWGTTPQLPDGTTYAWEGGV PNTSVTNKKIGHVKVTFPDGSSQVVEVNINVTDNQKSDAEKHTLQPNIQYAYVGQDMSDS SYARKGILNADEQTGATFRWRNGFVPDTSKAGWTTGIVVVTYPDGSINEQKVWVNVQSDA DRYPIETTTITVAKGTNISDKSWARKGVYNADQAGKENPQLPAGTDVIWYNGAPDTSAPK QKVGYVEVTFPDNSHKVVPVTVIVTDNGESDAEKNPIEGQDFSVYVNETPDPQKGIKDFD TIKNVKSVTWKGNNTPDTSKVGVVPATVVVTYNDDSSNEVAINITVKQMADDYNPQGGTI KASLHEDLSGTNRAEDAITNTSDMPDGTTYAWKEKVDTETAGSKPATLIVTFKDGSSKEV PVTVQVSSLANDYKDKIDVRTDTRTIVAKWKDDIKNYPAVDGIANAKTETTTDGKNYPNL TPVLKDQNPDTAIVWKSAPDLSKTGLTTGIATITFKDGSTRDVTIPVMVKSEADLNTPDV QTIKINSGESPKAEDGVANLHKDATNPQLPAGTDVNFDKQTDVDDFVKHGLPGQTKEFSA TVTYPDGSNETISIPIHINADNEVYTPVTQGIKAAKGTLPEAKAGIANLKDSVKQDDKTI SALPDGTNVVWANPGQVMSELGKMTTGQTKEFDAVVIYPDKTTANVKIPVTIANDADTYP IVKQPIVLPDRTLPENADDGLANLHKAIDFKTPQLPDGTHAEWKDKTAAQEIVKNMTPGN TVSIPADVVFPDGSIKSEGMDVIVHLHGQADDVDIKTQPVDLNKDGSLPDAKKGIQDVDN IPHLKRVDWSKDKDGTPASDLVKGMKPGETREVPATVTFDDGSTKDVTIPVHMHGQADDY DVQTQKVNTDHNGQLPEKAKDGIKNYDELPKDTTVEWGKDAQKTVDQTKPGTDVDVPATV TFPDGSKKEVTIPVHKYGISDDATITPKKVPTDDGSLPDASEGIDHVSFTDGPDKTPAQI IADGGRIEWGDDAADMVKNLKPGQSVDGVPIRVIFRDGSEKNVTITVKRPGQADEYGDKI ETQTVKTDDKGKLPATADDGIKNLGDLPEGTHASWGEGAQNLVDQMKSGDTKNIPATVHF PDGSTKDVEIPVHKTSQAEEYGDKVETQTVKTDDKGKLPATADDGIKNLGDLPEGTHASW GEGAQDLVDKMKPGETQNIPATVHFPDGSTKDVEIPVHKTSQAEEYGDKIETQTVNTEKG KLPATADEGIKNLGDLPEGTHARWGEGAQDLVDQMKPGDTKNIPATVHFPDGSTKDVEIP VHKTSQAEEYGDKIETQTVNTEKGKLPATADEGIKNLGDLPEGTHASWGEGAQDLVDQMK PGDTKNIPATVHFPDGSTKDVEIPVHKTSQAEEYGDKIETQTVNTEKGKLPATADEGIKN LGDLPEGTHASWGEGAQNLVDQMKSGDTKNIPATVHFPDGSTKDVEIPVHKTSQAEEYGD KIETQTVNTEKGKLPATADDGIKNLGDLPEGTHASWGEGAQDLVDQMKPGDTKNIPATVH FPDGSTKDVEIPVHKTSQAEEYGDKIETQTVNTEKGKLPATADEGIKNLGDLPEGTHASW GEGAQDLVDKMKPGETQNIPATVEFPDGSTKDVTIPVHKTETVEPKTRDVNTNGDGSLPS ADTTVTNLGEELR >gi|297149550|gb|ACGQ02000001.1| GENE 20 27542 - 28411 1059 289 aa, chain + ## HITS:1 COG:no KEGG:LAR_1469 NR:ns ## KEGG: LAR_1469 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 286 1 286 287 303 51.0 5e-81 MIRKHLVSAGITALAAVICICTALMWLAGLASPLVLSSTAILIILGVITGSLIPTILITW LIIGLTTIGAAILLIGYVVIDNSQKILLLLTYPLVASLTALAKTIIGHWGWIDRDRNAIE SYLSHYDPVVKLQTTYNAAKLYHKEAKFIANEKEANLRIHLATVHWVHSNQFKQFHDIEY KTVLRRISKVLKQLRFPSEQLYYIGNSTFLIISYALAEDTYIYKNRQTKQALEALEVENH NPQFKWGTLKVDQTNVSSYTELEHALRHLTRDMETDLVVEYLKGAEING >gi|297149550|gb|ACGQ02000001.1| GENE 21 28404 - 28562 94 52 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256852128|ref|ZP_05557515.1| ## NR: gi|256852128|ref|ZP_05557515.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 52 1 52 52 62 100.0 8e-09 MVNFFFILADVITILFAILIIILLVCQWVIYFRVEKTILSKESSYEKEEQNA >gi|297149550|gb|ACGQ02000001.1| GENE 22 28555 - 29865 1108 436 aa, chain + ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 1 434 2 416 416 223 31.0 5e-58 MLSEVLMIITLISIWLSILMSMITLGGATHFWLKQSKVLVDVKPLKKYPKISIIVPAHNE ELVIAQTTQALLDLNYPKDKLELLLYADNCVDKTADVMRSVTASAQKNGYHIQIIERKGT GGKAGVLNDALKIAKGDYLAVYDADAMPEKNALYFLVRKALENPQKYVAVFGRNKTRNAE QNFLTRCINQEIVVTQRIQHCGIWHLFQIGRIPGTNFIIQRNFVKEIGGWRNGALTEDTD ISFKIMQSGKLIALAYNSEAFQQEPERLHDYYFQRLRWAKGNYQVVINNFVHLFDCSNWR VKLETLYYSCTFFWFNAAIILSDWIFFSNVIALIIRLFNPEFQIPFTFGESNILITQLLL LNWLFMIILYLLQINTAMSTQYGQATTHQIWLGLASYFTYSQLFIIVSVHAVCSVILDDL FHRNKTVWVKTRRFND >gi|297149550|gb|ACGQ02000001.1| GENE 23 29877 - 31010 910 377 aa, chain + ## HITS:1 COG:no KEGG:LAR_1467 NR:ns ## KEGG: LAR_1467 # Name: not_defined # Def: endoglucanase # Organism: L.reuteri_K # Pathway: not_defined # 1 375 1 377 379 435 57.0 1e-120 MKQKIMWVILPIIIANYIATFYFIRTKNPEQIQIKTYQDWKKNYLVTKNSNQVFVNAGTN KHPVALSEAQGFGLIITAKAGKRGWASETEFDKLLNYYLAHQDYVGDHHTQKVSLMQWKQ YYNHHGKWVSEYNSATDGDLYIATALNTAAKVWPQKANYYHSLEAKLANDILRYEYNPQT GALTTGDWVRLDSYYANLMRTSDVLPFVFTNLAKTTGNKQWYAVQDSMLEKLVKLSKQHK AGLVPDFAWVGRNYAKPVAPKTIAGKNDGYYAYNACRVPIMLAKSESPKAKFVEKRILHY FSKQYNVFGGYKLNGERLVKNQSPSFSAPIFYAVNQYRGQGYDNLFVSQKYIFSKALPKN DYYGATLTTLVAVEGWE >gi|297149550|gb|ACGQ02000001.1| GENE 24 31088 - 31216 154 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIKISHSQLNNSLSSTSLIAVVGEFGIFKFKILLPTLSTTKL >gi|297149550|gb|ACGQ02000001.1| GENE 25 31271 - 32596 1160 441 aa, chain + ## HITS:1 COG:BS_ykbA KEGG:ns NR:ns ## COG: BS_ykbA COG0531 # Protein_GI_number: 16078351 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 9 435 8 434 438 370 49.0 1e-102 MKQQPKEHLKRSLGFGSAISIVIGTIIGSGIFFKQGSVLDSAGNSTLAILAWILGGIITL AGGLTIAEIGAQMPYTGGLYIYIENIYGRIAGFLAGWMQIIVYGPAIIASVAGFMSILLT NFFGLGTEWRIPFAVSCIVLIGLMNLLENKISVLFSVVTTLGKLIPIAAIIIFGLFWGNQ NALGQTMTEINQSTGNFGVAVLATLFGYDGWILIANLGGEMKNPQKLLPKAIILGITCVL IIYTLITIGILRFLPAELIHQLGENAPAYMTTKAFGPIGGKLMSAGIIISMLGTLNGKML TFPRIVFAMAERKDIPFSKSLAFLSKKGKAPINATIFVSILAFAMMLFFNPDRLSDLCVF TVYCFYLLAFFGIFILRKQNKNRPFSTPLYPLVPIVAIAGGVFVLSCELINDFHGVILFL GFVVLGLPIFYLVKRYYGEKI >gi|297149550|gb|ACGQ02000001.1| GENE 26 32631 - 32744 62 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKYVVELNEEDLQMLKDCHSKNPSIMKSLNEAKKED >gi|297149550|gb|ACGQ02000001.1| GENE 27 32846 - 33352 507 168 aa, chain - ## HITS:1 COG:SP0950 KEGG:ns NR:ns ## COG: SP0950 COG0454 # Protein_GI_number: 15900828 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 12 151 10 147 166 79 31.0 2e-15 MDFKASLPQGISASLLSEQDLFQIYKLCQTQPQYFKQMGQILSYQHLKHLLTALPDSGLS QDSKQFWGFWKGKELIAFCELILKFPEEDAAIIGWFMVKKSATGRGLGSALIRSLKMHLV NFKIKEIILSYSDKNYSGKHFWQGQGFEPTGEMEKYPEVTMITMSCKL >gi|297149550|gb|ACGQ02000001.1| GENE 28 33366 - 34394 963 342 aa, chain - ## HITS:1 COG:SP0182 KEGG:ns NR:ns ## COG: SP0182 COG1619 # Protein_GI_number: 15900119 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Streptococcus pneumoniae TIGR4 # 3 341 2 339 343 477 65.0 1e-134 MKVKKVAIVSLSSGVLGEDAVSHERKLGLKRLKDYGLKVEFMPHSLKGIDYIKKHPEKRA EDLLAAFRDDSIDMILCAIGGDDTYRLLPYFFEHDELKEAVKQKSFLGFSDTTKNHFMLN KVGLKTFYGQAFLTDVCELDREMLPYSKSYFEELISTGTIKEIHPSDVWYEERSDFSRQA VGSPRISHKNTGFELLRGTKQFSGEILGGCIESLYDFFDNSRYEDTVSLTQKYHLFPSLD EWRGKILLLESSEAKSTPEKYRKMVRALANYGIFDVVNGVLVGQPQDKVYYEEYKDILLE EIKNADLPIVYNLNIGHSTPRCIIPFGIKAEVDMNQQVIKFY >gi|297149550|gb|ACGQ02000001.1| GENE 29 34498 - 34926 507 142 aa, chain - ## HITS:1 COG:lin0458 KEGG:ns NR:ns ## COG: lin0458 COG1959 # Protein_GI_number: 16799534 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 1 135 1 136 155 119 48.0 2e-27 MKYSYKFSDAIHLLSYLEIFKNGDLSSKAIAASIESNPSIIRQLMSDLRNVGLIETRQGK ASAKLTRKPSAITLFEIYMAIDMDHELIHVDPQTNLKCPVGRNIQTSLNGFYEQIQNSAF NQMKAITLQDVIDDILEKEKMY >gi|297149550|gb|ACGQ02000001.1| GENE 30 34952 - 35803 1239 283 aa, chain - ## HITS:1 COG:L29875 KEGG:ns NR:ns ## COG: L29875 COG0702 # Protein_GI_number: 15674152 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 1 282 1 281 281 194 40.0 2e-49 MKYAITAATGNFGQVAVKLLNKLVGEDNVIVVARNLEKAKKLFPNNEVRQGDYDDKDAMI KALTDVDKVLFISSQPGGKVDRATAQKNVVDALVKNNVKFVAYTSFPKAENSDNWLASDH KITEEAIKKAGLHHSFLRNNWYLENEMGFLQSGANKQAALYWAKGYAGWALEREYAEAAV NVLTAETSKEIYEFSGKRANYEDLGHALQAATGNNFEIKHVSQDEYVKYLENTGLKPEMA TLFASFEQPIYDGALDEDTTDLADVLGHSSLSLEAAIKEILAR >gi|297149550|gb|ACGQ02000001.1| GENE 31 35978 - 37024 736 348 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 9 341 519 860 860 288 47 1e-88 MTDKKDIRILAYESSCDETSTAVIKNGREIESLVVATQIKSHQRFGGVVPEVASRHHIEV ITQITKEALSEAKVTWNDIDAIAVTYGPGLVGALLIGVSAAKAASMATGIPLIGVDHIMG HIMAAQLEDEIEYPALALQVSGGHTELVLMHDPINFEIIGDTRDDAAGEAYDKIGRVLGV NYPAGKTIDTWAHQGNDTFNFPRAMLEDDDYDFSFSGLKSAFINTCHHADQIGEKLDKYD LAASFQAAVVDVLSHKTIRAIKEFKPKTFVLGGGVAANRGLRERLEAEIGKLDTKPKVII PPMKLCGDNAAMIGAAAYNLYKAGKFSGLDLNADPSLELPYADAILDR >gi|297149550|gb|ACGQ02000001.1| GENE 32 37021 - 37575 545 184 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227894610|ref|ZP_04012415.1| ribosomal protein ala-acetyltransferase [Lactobacillus ultunensis DSM 16047] # 1 178 1 179 190 214 57 6e-54 MLKKFRHFFKEEPEVNLNFTPYVINLAGRTMQVMQASEMNIPDLLELEKKVYQGKQPWSS FSFASELRKKHNSLYLVIYDKAQLVGFIGGRFIPCEGHITNIAVAPAYQGQGIGHYLINL IIEIAKKNGAAQVSLEVRADNEPAQKIYKSLGFEAQFVRTGYYQDDHMDAINMVLHLEGK EDTK >gi|297149550|gb|ACGQ02000001.1| GENE 33 37559 - 38287 879 242 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 42 232 1 191 380 343 90 0.0 MKILSVSTATNFLTISLSENEKLIKQVEEKDQRNHSEHLDPMIDKLLKDCNLSLNQIDRF AVAIGPGSYTGLRIGITTMKMFASILNKEIVGISTLQALAANKQTADSLTLVCLDARNDN FFAGAYTNGTEVIPDGHYSLEALLKDLKIVLADKNIQKLIILGSGMDNHKDLLNSLSCDI IWGNEEENLVHASQIAKLALTSEVIDADQLVPRYLRRTQAEMDWHKKTGKPFEPDSNYVE EV >gi|297149550|gb|ACGQ02000001.1| GENE 34 38287 - 38826 636 179 aa, chain - ## HITS:1 COG:no KEGG:LBA0387 NR:ns ## KEGG: LBA0387 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 3 171 10 178 178 202 65.0 4e-51 MKKFFFKLSLQELIFLALVIAIKIILGRFSFGPTYVKVGLGFIGSVALGYFFGPVWGAVG GGISDLVSSALFGNEGGFFIGFTLTAMLAPMIYGAFFYKKTIKIWRIVAASLLVTIFVNI LLNTIWLHFIYKMSFTVALTARLLKEIIVPWIQMIIIFFVLNGLQRVNERKEKLEKSRM >gi|297149550|gb|ACGQ02000001.1| GENE 35 38826 - 38966 110 46 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852117|ref|ZP_05557504.1| ## NR: gi|256852117|ref|ZP_05557504.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] # 1 37 1 37 242 66 100.0 5e-10 MKILSVSTATNFLTISLSENEKLIKQVEEKDQRNHSEAQEVEGEAN >gi|297149550|gb|ACGQ02000001.1| GENE 36 38966 - 39505 636 179 aa, chain - ## HITS:1 COG:no KEGG:LBA0387 NR:ns ## KEGG: LBA0387 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 3 171 10 178 178 202 65.0 4e-51 MKKFFFKLSLQELIFLALVIAIKIILGRFSFGPTYVKVGLGFIGSVALGYFFGPVWGAVG GGISDLVSSALFGNEGGFFIGFTLTAMLAPMIYGAFFYKKTIKIWRIVAASLLVTIFVNI LLNTIWLHFIYKMSFTVALTARLLKEIIVPWIQMIIIFFVLNGLQRVNERKEKLEKSRM >gi|297149550|gb|ACGQ02000001.1| GENE 37 39505 - 40083 516 192 aa, chain - ## HITS:1 COG:no KEGG:LBA0387 NR:ns ## KEGG: LBA0387 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 8 171 12 175 178 140 42.0 2e-32 MNKYKDNFFKLSLQNLVLLGLVIAIKLCLSSVAIGPAFFKISLAFLGSVALGYLFGPVWG GLGGLVSSLLHLIIFGDKANILLGTMLSAILVPMIYGFFFYNKEIKAWRVVMGHLTVTVL INIMLNNYLFSLVSGVSLQVAFIQRLPKEVILPWGQMILMYFVLKGLVPIRQRMVSFERN QSKAQEVEGEAN >gi|297149550|gb|ACGQ02000001.1| GENE 38 40076 - 40804 807 242 aa, chain - ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 1 238 3 241 245 117 30.0 2e-26 MKYQENYQIQYADCDETGHVKLQALIDIFMHVSNRQLENSQAGSKEMAMKNQGWVVTQYH MDFKRLPVVAEQVKIITKPVGYNRFFEYRDFSLLVDDKEIIKVQSQWVILDLEKRRIVPA DSEVMARFGSPLLKKNPKMRRLRKQDNYEQTRQYRVRYDDLDLNHHMTNSHYFSWMEDML ERAFLNAYEPKSVDIKFDKEVLYGQKVTSSLLINEQTSYHLISQGDQVATIAEITWKKRN DE >gi|297149550|gb|ACGQ02000001.1| GENE 39 40807 - 41661 759 284 aa, chain - ## HITS:1 COG:all4680 KEGG:ns NR:ns ## COG: all4680 COG0313 # Protein_GI_number: 17232172 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Nostoc sp. PCC 7120 # 12 278 8 274 285 250 47.0 2e-66 MQIQSSFKEEKGKLYLVPTPIGNLEDITLRAKRILQEADYIAAEDTRTSGIMLDKIGIHN KMVAFHKFNSKQKAPELVQMMKEGAVIAEISDAGMPVISDPGYILVQECIKANIPVVPLP GPSAFATALIASGFDAQPFTYYGFLPRKASEQRPYFEAMNQAKATAIFYEAPHRLTKTLA TLASVLDDDRQIVCARELTKIHEEFVRGSIKEVLEHFEQVDPRGEFVVLVSPNTDEAPKV SMEELVKLVDQLVATGASKKDAIKQVAKQNDVSKNDLYDFYHQG >gi|297149550|gb|ACGQ02000001.1| GENE 40 41645 - 42001 304 118 aa, chain - ## HITS:1 COG:SPy0405 KEGG:ns NR:ns ## COG: SPy0405 COG4467 # Protein_GI_number: 15674542 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 12 103 15 105 107 63 36.0 1e-10 MDPYSELRQVHQNLEAMSKMVAGLENDILDTLKENTELKMENQLLREKLDKLTAEKAGKE VKSQSGLASLRKIYESGYHICNMYYGTHRDPSSDCMFCLDILDNFEHKGKGAGHANTK >gi|297149550|gb|ACGQ02000001.1| GENE 41 42019 - 42867 693 282 aa, chain - ## HITS:1 COG:BH0044 KEGG:ns NR:ns ## COG: BH0044 COG0470 # Protein_GI_number: 15612607 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Bacillus halodurans # 3 165 5 168 328 110 38.0 3e-24 MIDLKQAAPKQTIFLKNAFQQDKLAHAYLFVDNLTQRALATAYWLACLANCTGDNRPDGT CINCKRVLSGNHPDVFLVRPEGKQSLSIDQIRPLKEELAKSPVEGTRRFFFIENAQTLTM PAANALLNLLEEPVAPVTTILLTNNAQQILPTIRSRTQILEFNDLVENSSKDQDLLLYGF SQEDLDNLGETGELDQAVKYFYQELLENNDLAVISAHKLAGMIKNKVQEEYVFYLLKKFC SDGIKKQQLFGNQTLLERLLDCDKMKFSNVSFLNRLDYLALS >gi|297149550|gb|ACGQ02000001.1| GENE 42 42867 - 43187 532 106 aa, chain - ## HITS:1 COG:BS_yaaQ KEGG:ns NR:ns ## COG: BS_yaaQ COG3870 # Protein_GI_number: 16077097 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 106 1 109 109 108 52.0 3e-24 MKLIYAIVQNKDAGRLSKKFNENNVRATKLASTGGFLSEGNTTFIIGVQDEKVDSVLELI KDCSQKRQEFVNPVVNSHAGEFTQPLEITVGGAIVFVTPVDEFKRF >gi|297149550|gb|ACGQ02000001.1| GENE 43 43187 - 43834 832 215 aa, chain - ## HITS:1 COG:L3846 KEGG:ns NR:ns ## COG: L3846 COG0125 # Protein_GI_number: 15672380 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Lactococcus lactis # 1 212 1 211 211 217 53.0 1e-56 MAGYFITFEGPDGAGKTTVLEKLVEEIKKKVTCEILVTREPGGSKIAEAIRDIILNPENT EMDDRTEALLYAAARSQHMAEVVFPALEAGRLVFSDRFVDSSLAYQGMGRNLGIEKVAEI NQFATDGLNPNLTLFLDIDPKAGLARIAKVRPDKEDRLEKEKLSFHQKVYTGYQEIVKRY PERIKVVDASQDIDQVVADCLAILKQQLPDLFEVK >gi|297149550|gb|ACGQ02000001.1| GENE 44 43925 - 44164 298 79 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00381 NR:ns ## KEGG: LCRIS_00381 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 5 79 5 79 79 69 56.0 4e-11 MILGKKTQVKEIGDQHLMATISKLQRQLLNEQELDPTTVDYSEDNIMASKILKAKYSFLY SVARQRHTKSSITNNAITQ >gi|297149550|gb|ACGQ02000001.1| GENE 45 44161 - 44760 514 199 aa, chain - ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 199 1 198 198 261 62.0 6e-70 MQYPLPIARLIESYMKLPGIGEKTATRLAFYTLDMPADDVEQFAQSLKDVKTLLHQCSIC GNITETDPCQICRDSNRDRSTVMVVEQPKDVMAFEEMGEYDGMYHVLHGVLSPMEGIGPE DINIKSLITRLQKDDDIKEIIIALNSTPEGESTAMYIAKLLKPAGLKVTRLASGLAVGTD IEYANSITLKRAVQGRIDL >gi|297149550|gb|ACGQ02000001.1| GENE 46 44760 - 45089 523 109 aa, chain - ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 13 108 2 97 99 102 62.0 2e-22 MAKRPNFGGMGGMNMQQMMKQAKKLQAQMQEEQANITAQEFVGKSADDIVTATFSGDRRL KDIQIKPEAIDPEDPDMLQDLIIDAVNKGLTQIDQATQAGLGKYTKGLF >gi|297149550|gb|ACGQ02000001.1| GENE 47 45130 - 46911 1804 593 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 593 1 579 579 434 42.0 1e-121 MAYQALYRKWRPRTFDSVVGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAK ALNCLNLQDGEPCNECENCKAADSGAMPDIIEIDAASNNGVDEIREIRDKVKYAPTQGKY KVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISK QNLVDRMKFILEQEDIPYENQALQVIAQVADGGMRDSLSILDQLLSFEKEKVEYKDALNI TGYAAREATEQLFLNLLNQKVSESLELSHKLLQDGATAKNLLSELISLATETMLVLKANK DSEFLTKDFTKQITDVPEKRYFQLITAANEALNDLRFTNQEEIPLDVFLVKIANPVKEMV EKVADSHNSEINPAINQELADLKAQVAALTKKVSQSSGFATNNQVFKIDDAKKKPQSPKA SEPQAKPKPKRKKTVNSELNRQAVYAVLEKATKKDLEDVRNVWPDLQSVLGVSEQALLKV LEPVAASHNRVVMKCKYAFWFERTSENTNLMATLNSELAKFLKHDSEIVLVPDADWLQVR KDFLAKHKDEILARQKQGSAEIEVDQQQEDSQEKEVIDKAKEVFGSDNINVKD >gi|297149550|gb|ACGQ02000001.1| GENE 48 47070 - 47594 501 174 aa, chain - ## HITS:1 COG:BH0033 KEGG:ns NR:ns ## COG: BH0033 COG0590 # Protein_GI_number: 15612596 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Bacillus halodurans # 9 157 7 154 159 150 48.0 1e-36 MFSSEEKKHYMELAFAEAKKAEAQDEVPIGAIVVDPKGQVIGRGYNRRELDNVATHHAEI LAINEACKTLNSWRLIDCSLFVTLEPCAMCAGAIINARLKEVFYGAPDHKAGASGSVVDL FAVEKFNHHPQVIRGLYRDKASSMLTNFFRTIRAKQKEKKLKAKENKASSSQID >gi|297149550|gb|ACGQ02000001.1| GENE 49 47604 - 48203 660 199 aa, chain - ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 4 199 5 200 201 215 54.0 5e-56 MAEQYFTENPNTKHDLRVIDYHLAGIDLKLTTDAGVFSKNRVDYGSGVLIRNMLEENPVS GNILDVGCGYGPIGLFAAKKWPDRQVDMVDVNERAMDLARKNAEVNGVTNVNIFASSVYE NVDKQYAMILTNPPIRAGKNIVSEILEKSYEHLLVGGKLLVVIQKKQGAPSAKKLMETTF GNCEIVERDKGYYILRSVK >gi|297149550|gb|ACGQ02000001.1| GENE 50 48300 - 48662 572 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525592|ref|ZP_03955641.1| ribosomal protein L7/L12 [Lactobacillus jensenii JV-V16] # 1 120 1 120 120 224 100 5e-57 MALDTEKIIEELKGATILELNDLVKAIEEEFDVTAAAPVAAAGAAAGAAAKTEFDVELTE AGQEKVKVIKAVREITGLGLKDSKDLVDGAPKVIKEGVSEDEANDIKAKLEEVGATVTVK >gi|297149550|gb|ACGQ02000001.1| GENE 51 48728 - 49246 839 172 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525593|ref|ZP_03955642.1| 50S ribosomal protein L10 [Lactobacillus jensenii JV-V16] # 1 172 1 172 172 327 100 5e-88 MEVNQLSKAAIAAKEKLVDAFAEELKAAKAILVIDYLGLTVDEVTNMRKELRENDVKMKV IKNTYLRRAAKKAGIEGLEDTFVGPTAVIYTDNADDITEPARIVSKYEDDFDVINIKGGM LEGKLTSKEEIKELASIPGREGLLSMLVSVLQAPVRDFAYAVKAVAESKDED >gi|297149550|gb|ACGQ02000001.1| GENE 52 49428 - 50348 263 306 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 8 295 9 318 319 105 25 3e-21 MRQYLVFDIGGTNLKYALLDSAGNIIEKDKKPTVKSGLNDFLKEMYEIADQYKGKFKGIA ISCPGKIDVDNKIIHFGGSLPFLDGANIQELFGDKYGVPVGVENDGKAAALAEMWLGALK DVVSGEMLTLGSEVGGGIVVGGQLIHGAHFQAGELSFMRYDMNCADWSGFTGQKGSAVNM IKRVNEALGNSDLEDGQKAFEAINAGNAQALQIFEEYCADVANIILSVQAVVDGERVVIA GGISAQDIVIETIRKQYQALANKFYRVNNELTMPEIVRAKFENDANIYGALYALLLDING QSEEAK >gi|297149550|gb|ACGQ02000001.1| GENE 53 50450 - 51466 884 338 aa, chain - ## HITS:1 COG:CAC1488 KEGG:ns NR:ns ## COG: CAC1488 COG0463 # Protein_GI_number: 15894767 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 3 338 2 338 338 271 42.0 2e-72 MKKVLSIIVPCYNSEDYLEKCVNSLVAIRDDVEIILVDDGSKDKTPELIDQFAQKYPEQI IPIHQANAGHGGALNKGFSIASGEYIKVVDSDDWVDYGAYLEIVTFLKHLIQKKQSVDLL ISNYVYDKVGAKHKKVVHFPHLPKNKFFGWDDVKLYLGQYLMMHSLIYRREVITNRAHLQ LPTHVSYDDNIYVFEPLRHVRKMYYLDVNFYHYFIGREDQSVNESVMLKKIDQQLLINKR MIKFYAEHIDPNTSLGKYMKFYLEIITAVSSIILIRGKKSEYIEKKDELWQYIKIKNPKL YHSLKRRPLGICMNLPTRLGNKIASGFYIVAHLVYGFN >gi|297149550|gb|ACGQ02000001.1| GENE 54 51643 - 52335 1162 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525596|ref|ZP_03955645.1| 50S ribosomal protein L1 [Lactobacillus jensenii JV-V16] # 1 230 1 230 230 452 100 1e-125 MPKHGKQYLEAAKKVEKNKFYSVAEAMKLVKETSYAKFDATVEVAFNLSVDPKQADQQIR GALVLPNGTGKTQKVIVFAEGPQAEQAKEAGADEVGSDELVEKVQNGYLDFDVVIATPMM MAKVGRLGRVLGPKGLMPNPKTGTVTMDVKKAVENVKAGQVEYRVDKQGLIHAPIGKVSF EDEKLAENFTALRDVILHARPASAKGQYVKSVAVSATFGPGIHLDPLNMN >gi|297149550|gb|ACGQ02000001.1| GENE 55 52432 - 52857 693 141 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525597|ref|ZP_03955646.1| 50S ribosomal protein L11 [Lactobacillus jensenii JV-V16] # 1 141 1 141 141 271 99 4e-71 MAKKVINVVKLQIPAGAATPAPPVGPALGQAGINIVGFTKDFNARTADQKGMIIPVVITV YEDRSFEFITKTPPAAVLLKKAAKVEKGSGEPNTKKVAKVTKAQVKEIAETKMQDLNAAD VEAAMRMVEGTARSMGFEVED >gi|297149550|gb|ACGQ02000001.1| GENE 56 52988 - 53545 801 185 aa, chain - ## HITS:1 COG:SA0494 KEGG:ns NR:ns ## COG: SA0494 COG0250 # Protein_GI_number: 15926213 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Staphylococcus aureus N315 # 3 181 4 182 182 187 53.0 1e-47 MVETSAKKWYVLHTYAGYEDKVKSDLLSRAQSMGMQDFIFRVVTPEETKVETVRGKKQEV EEKIFPGYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDDEIARILENQGVE AKKPDIDFEIGETVTITEGAFDGMVGKITDIQEDKEKIFVSVDMFGRATTAELDYDQVKK FDGNE >gi|297149550|gb|ACGQ02000001.1| GENE 57 53647 - 53817 238 56 aa, chain - ## HITS:1 COG:no KEGG:Ldb1668 NR:ns ## KEGG: Ldb1668 # Name: secE # Def: preprotein translocase subunit SecE # Organism: L.delbrueckii # Pathway: Protein export [PATH:ldb03060]; Bacterial secretion system [PATH:ldb03070] # 1 56 1 56 56 75 66.0 6e-13 MFKFFKSVGQEMKKVTWPTAKQNRRDTTTVIVTSVLFALFLGALDWAFSTLTQMTF >gi|297149550|gb|ACGQ02000001.1| GENE 58 53820 - 53969 257 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525600|ref|ZP_03955649.1| ribosomal protein L33 [Lactobacillus jensenii JV-V16] # 1 49 1 49 49 103 100 2e-20 MAVKKAALACTICGSRNYSITASKTRTERLEIKKFCKHCKKMTLHKETR >gi|297149550|gb|ACGQ02000001.1| GENE 59 54117 - 54335 262 72 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0346 NR:ns ## KEGG: LGAS_0346 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 72 1 72 72 102 84.0 4e-21 MTEDVLKTRLLDRHMKEVFDWSDSNIPVRDAIWDYFMEKNGKNTLKTEEDMLPFLKDSDD KIEAFVNENLKK >gi|297149550|gb|ACGQ02000001.1| GENE 60 54392 - 54943 517 183 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00352 NR:ns ## KEGG: LCRIS_00352 # Name: not_defined # Def: DNA-directed RNA polymerase sigma factor, sigma H # Organism: L.crispatus # Pathway: not_defined # 5 178 5 177 181 124 36.0 2e-27 MNTVENLVRKVKENDDIALLLLFERYKPMITAVTKRYFIRCLDENDWNQEALIVCYESAG LFDFERGTTFGSFFKLRLQNKAKNLLRFELAKRRALYANAISYEALKERGQICDPSYEQS DLPTSIELSNFIQTLSQLEVVALMVITGMIDLKQASVTAQTSPETIKRAIARTRIKMRAY FLR >gi|297149550|gb|ACGQ02000001.1| GENE 61 55047 - 55802 560 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 1 249 1 249 255 220 46 1e-55 MTSVKGDFVFGRHAGIDFLKNESADKINKVFLQNGVQVEFANQVYGLAKKKHLIVQEVPK NKLDKLVPDANHQGLVLAISSFEYADLDKLVKKIADKENPFLLMLDSIEDPHNLGSILRS ADATGVDGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTA MEGQDYRYWDAKGKCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY QMLNSKMPLSK >gi|297149550|gb|ACGQ02000001.1| GENE 62 55789 - 56232 303 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 14 137 10 133 141 121 49 7e-26 MGKIKQLFEKKINPDTLNGQTLAYLGDAVYEIYIRRHLLKGGVVRPQVLQRDATHYVSAK AQAALITKMQDDQILTEAELATFKRGRNAKSHTHAKNTKVATYKLSTGFEAIFGYLELLD KQERIEELATWCIKQVEAGGIDNYDFS >gi|297149550|gb|ACGQ02000001.1| GENE 63 56225 - 57646 1618 473 aa, chain - ## HITS:1 COG:BS_cysS KEGG:ns NR:ns ## COG: BS_cysS COG0215 # Protein_GI_number: 16077162 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Bacillus subtilis # 1 473 3 465 466 504 53.0 1e-142 MKIYNTLTRQKEEFKPLVPGKVSMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYKGFDV KYVSNFTDVDDKMINEARAEGITVPELAKRYINAFMEDTTALNIEPATLHPRATEEIKDI IAFIKDLIEKGFAYEVDGDVYYRAKKFNGYGKLSDQDIASLEEGASEHVNEAEFAKKEDP IDFALWKKQKQSDEIAWESPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQDLEFPHHEN EIAQSEAKTGKKFVNYWMHNGFVTVGKDEEKMSKSLHNFVTVHDILKRVDPQVLRFFMAS VQYRKPINYSEENLKQAAIILDKIKNTVLNVQDKLQDTDSQENKALAVAIEDSENRFKEA MDDDFNVQNALSVVYDLLPIINKNISESTSDLSNLKQFLQHLENWMAIFGVDIHKLTAEK VSDDDSEIEELVKKRDEARKHKDFATSDAIRDQLAAMNIVLQDTPKGTKWRRG >gi|297149550|gb|ACGQ02000001.1| GENE 64 57741 - 58046 274 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852088|ref|ZP_05557475.1| ## NR: gi|256852088|ref|ZP_05557475.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 101 1 101 101 146 100.0 4e-34 MVILNTLIISRLPDNSLLQILCNIALCVPSTIGMYKVANFKTQVIRLSWWNVFMCIPYIL LLVGYLIWSGWVTIIANIMIVIFSTVGIYTSLNIKFKNLTN >gi|297149550|gb|ACGQ02000001.1| GENE 65 58167 - 58514 208 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852087|ref|ZP_05557474.1| ## NR: gi|256852087|ref|ZP_05557474.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 115 1 115 115 181 100.0 9e-45 MKKRPIVLYTCMIIFDTLVISYLPAGTIFQILGSVTLISPIIIGMYAIANFKRDDFRFSL LNALICIPYVFLLVEYLIWSGWIRIVVNIMIVLFSTVGIYAYLSLKSNLNHKKVS >gi|297149550|gb|ACGQ02000001.1| GENE 66 58480 - 58671 111 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQVYKTIGRFFIVSLPLVYLFYSINQPLNSFLSNFILPNIGSLFIKQALFNYLLNFTNPT TKN >gi|297149550|gb|ACGQ02000001.1| GENE 67 58632 - 59060 489 142 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852086|ref|ZP_05557473.1| ## NR: gi|256852086|ref|ZP_05557473.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 142 1 142 142 194 100.0 2e-48 MQLTMWLVLLISILGLVLIGLSIKKFNNRFNLFVEGIAFLYVAGIFLLDSLVSVKDAINL AYSYMALLFGIFGSLFLIVAWITKAYKNFILQDWISAAALGIMAELIALSFKSPNLAMSD YVILGFTLIIQFLVVGFVKFNK >gi|297149550|gb|ACGQ02000001.1| GENE 68 59193 - 60692 2028 499 aa, chain - ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 4 491 5 488 491 559 59.0 1e-159 MAKQKIRVRYAPSPTGHLHIGNARTALFNFLFARHNKGTLVLRIEDTDTARNVEGGSKSQ MENLHWLGIDWDEGPDKGGKYGPYRQSERKEIYNKLIKQLLDEGKAYYSYMTEEELEAQR EEQRAMGIAPHYVYEYQDMTADEIKEAQAKAEAKGLKPVVRIHIPKGKTYEWDDIVKGHI SFESDTIGGDFVIQKRDGMPTYNFAVVVDDHLMEISHVLRGDDHIANTPKQLVVYEAFGW EPPKFGHMTLIINAATGKKLSKRDESVLQFIEQYRDLGYLPEAMFNFITLLGWSPVGESE IFSQRQLIKDFDPKRLSKSPAAFDEKKLEWVNNQYVKTANRDELLDLALNNLQEAGLVDK DITPEKMEWVRQLVNIYSVQMSYTKQIVDFSHIFFEDKQALTEEEVEEIKNDEGRVVIEE FRKQLDLVPRFTAVQVMNAIQATRKATGVKGRKLFMPIRIAATGSMVGPGIGEAIELMGK DKVEHNIDLTLSEMTKQGL >gi|297149550|gb|ACGQ02000001.1| GENE 69 60767 - 62143 1275 458 aa, chain - ## HITS:1 COG:L0303 KEGG:ns NR:ns ## COG: L0303 COG1066 # Protein_GI_number: 15674046 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Lactococcus lactis # 1 458 1 453 453 535 57.0 1e-152 MAKAQTRYKCRSCGYISASYLGRCPNCGSWNQFEKEVQEVRKASTKQTPSRLMPTTGLHE PVTLEKVKAEKETRIPTKFSELNRVLGGGIVTGSLVLIGGDPGIGKSTLMLQIMSTLASE HKVLYVSGEESASQIKLRADRLGVGNSGMYLYPETNMSNIRDQISDLKPDFVVIDSIQTM NEPSLDSMVGSAAQVREVTSELMHIAKIDQITVFIIGHVTKEGAIAGPKILEHMVDTVLY FEGDEHHAYRILHSVKNRFGAANEIGMFEMENSGLKEVTNPSSIFLDERLPNSTGSCVVV SLEGTRPILAEVQALVAPTAFGYAKRTTSGIDYNKAALLLAVLEKRGNLMLQNQDAYLTT TGGIKLTEPAIDLAIVMAIGSSYKDMEIPSEDCFVGEVGLTGEVRRVNKIESRIAEAEKI GFKRIFIPKFNMKASFSKRKIEVVPVSTVAQALKLVFG >gi|297149550|gb|ACGQ02000001.1| GENE 70 62157 - 62696 578 179 aa, chain - ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 177 1 148 150 135 43.0 4e-32 MKVRGFEICEKYKDADINLPKRQTIASAGYDLEAAEDCVIPSIWRLNFVRIFRLIRNGHE LNERDYEYADQILQPIMVHTGVKAYMPDDEMLIIANRSSNTVKRRLCLPNSIGVVDSDYY NNPNNEGELMIQLINYGVRPIHIKKGERVAQGIFMKYLRTDDDAPVSRQRIGGFGSTKK >gi|297149550|gb|ACGQ02000001.1| GENE 71 62896 - 63090 261 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256852082|ref|ZP_05557469.1| ## NR: gi|256852082|ref|ZP_05557469.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 64 34 97 97 119 100.0 5e-26 MAIDHIFVSPEVKSDLVDELIRFALSYARDNHLKVMPLGPTILAYFKENQAALTDLFYKP SLIL >gi|297149550|gb|ACGQ02000001.1| GENE 72 63157 - 64506 1878 449 aa, chain + ## HITS:1 COG:SP0281 KEGG:ns NR:ns ## COG: SP0281 COG3579 # Protein_GI_number: 15900215 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pneumoniae TIGR4 # 5 446 4 443 444 472 53.0 1e-133 MAKEISQAAIENFKADFISRKDARIAARAAQTNGIFKASQDTQTQIDLNPTFSVEIETGK VADQKASGRCWMFSALNTMRHPLQKNFKIKGFELSQNYTNFWDKFEKSNWFFENVIATAN QDLGDRKVSFLFATPQQDGGQWDMLCGLIEKYGIVPKSVYPETFSATSSAALNDTLNTLL RKDGLKLRELVKAGKSSKEIESAKDEMLNEVFRVLAISLGVPPKKFDFEYRDDDKNYHID CDITPQEFFKKYVGWNLSDYISTINAPTTDKPFHKVFSVEYLGNVVGGRQVRHLNLPIDE MKELIINQLKSGEVVWFGSNVVKDSERRAGLLDTKLYRRDELFDVDFSMSKAEKLDTGES LMDHAMVITGVDLVDGKPTKWKIENSWGEKAGFKGYFVMSDDWFNSFVYQAVINKKFLSD ELKQTFEDGSKNPIQLLPWDPMGALAMEF >gi|297149550|gb|ACGQ02000001.1| GENE 73 64555 - 65490 842 311 aa, chain - ## HITS:1 COG:FN1603_1 KEGG:ns NR:ns ## COG: FN1603_1 COG4639 # Protein_GI_number: 19704924 # Func_class: R General function prediction only # Function: Predicted kinase # Organism: Fusobacterium nucleatum # 1 183 1 174 174 82 27.0 8e-16 MRKIFLLRGAPGSGKSSFIARHHLQPYAISRDSIRLLLADLTVYYEEEADYLHQVIPRHV NVRTEQLVDNLVEHKMSYGETVIVDGTHIAPSAIEHFRPLVDKYRYELFVVDLMQNNTLD NLLKRNQTRMHYDWVKPEVVKQMFNTYKAHPEVPEWAKMITPNQMERALSQREINLDHFE HVIAVPDGVKEEDFPHVHISNFYFSFNDKFTEKYGTYRNVISIAKTREEAIEEFKLPYFV FKFHHKHFLISAYPIRNEMLDPIRKVKGVWTYSTGLYNLADFVKEFPENKQQHVHQFNLS KLDNSRLLHIW >gi|297149550|gb|ACGQ02000001.1| GENE 74 65576 - 66253 724 225 aa, chain - ## HITS:1 COG:SA2204 KEGG:ns NR:ns ## COG: SA2204 COG0588 # Protein_GI_number: 15927994 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Staphylococcus aureus N315 # 1 224 1 228 228 206 44.0 4e-53 MVKLVLVRHGESIANAENIFTGWNDIGLSKRGIDEAKMAGELIKEMPDFAPTHIHTSLLS RAIMTANIISEVNDFLYLPITKTWRLNERHYGALRGINKDKAREIFGVEQIKNWRRGFDE VPPLAKDSLNDRRYDMIDPQILPKAESLHQTQKRLMPYYHEHVASQLIQGKDQLIVAHGS SLRALIKKLESIDNHDIVNLEVPNAEPIVYTMNSELKIIDKKILS >gi|297149550|gb|ACGQ02000001.1| GENE 75 66264 - 66431 185 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282934870|ref|ZP_06340102.1| ## NR: gi|282934870|ref|ZP_06340102.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 55 1 55 55 89 100.0 5e-17 MENKYFLVAVLLIVGIYDMSFYYNRRHQPNNQKGLKAYLIFGVILFAAGILALFR >gi|297149550|gb|ACGQ02000001.1| GENE 76 66433 - 67323 824 296 aa, chain - ## HITS:1 COG:PH0896 KEGG:ns NR:ns ## COG: PH0896 COG1230 # Protein_GI_number: 14590752 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Pyrococcus horikoshii # 16 290 17 289 295 233 44.0 3e-61 MKQNKITSKYLFVTILNIVITLAEFLGGIFSGSLALLSDAVHNLSDVAAIVISFVAHLIG QKDRDKHKTFGYQRAETLAAFTNGVVLFVISFFLMIEAFERFSKPQEVKGQLMLIIAVIG LVANGISMLVMKHDSSHNLNVRSTFLHMLSDALSSVAVVIGAAIIYFWKSNLVDPLMTLL VSIFVMFEAYKITKKAANILMESNPNVDLDEVKKIVLAFPEVTNLHHLHVWRYSDDLIMM DAHVNVTEKMSVVQLEQLYMKIGQVLKEKLGINHVTLQAEYQRGLKENMIVLNKDD >gi|297149550|gb|ACGQ02000001.1| GENE 77 67332 - 68012 857 226 aa, chain - ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 5 179 7 179 224 100 35.0 2e-21 MTTEVYLIRHGETMFNQLNKVQGWADSPLTIKGINDLKKTAEVLSQIHFDNMYSSDLKRA IDTVHLMKNANEVSEIGKIKKLPEFREVFFGSFEGDDIDKTWEAIGQAAGVGPERNVQKI INQVGIYEFREATKKADPRHLAENSEELDTRMVRAIKKLQEETENENRVLLVSHGDFIKT WGIKYWNKSDRLHDIEFPDNGSITRGILSDDGKFEIVDYNIKAEDF >gi|297149550|gb|ACGQ02000001.1| GENE 78 68077 - 68829 638 250 aa, chain - ## HITS:1 COG:RSp1268 KEGG:ns NR:ns ## COG: RSp1268 COG0730 # Protein_GI_number: 17549487 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Ralstonia solanacearum # 10 249 7 249 252 84 26.0 2e-16 MTGEVLVFIFLVAAGILAGIVSVVSSMASLVSYPALLLAGVSPVYANVTNTAALIFTGMG AAASSVKELKKSWRNYIKYIILILIGAVIGSFLVVIFPGKIFEKLVPFFVLFSAFLFLVS GKKITYQKREDNQLIAQIEMFAAGVYTGYFGAASGILMLIALLSVSKDNFVVVNAVKNVI GSLGNLIALVIFLFTSKVYWSKAIPLALGLFIGGFLGQKIIKFLPVKAVRVITFIFAVFL AIYLGWQAYC >gi|297149550|gb|ACGQ02000001.1| GENE 79 68921 - 69493 714 190 aa, chain + ## HITS:1 COG:SP0804 KEGG:ns NR:ns ## COG: SP0804 COG0693 # Protein_GI_number: 15900697 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Streptococcus pneumoniae TIGR4 # 1 183 1 176 184 157 46.0 2e-38 MKKVAVIFADGCEEIEGLSQVDVLRRLGVPTDMIGLTKLQVHGDHDINITCDKILDDSLL DYDLVSFPGGKPGAEALRDNSQLAQLMKKRHQLGKWNAAMCAAPIALSRYGLLNDTDYTC YPGFEKEIGKECPTGRFHEDIVVTDSKQKIITSRGPATAWAFSYALAQALGIETKTLEDG MLYTYLKDNI >gi|297149550|gb|ACGQ02000001.1| GENE 80 69569 - 70105 706 178 aa, chain + ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 3 174 1 167 169 145 40.0 3e-35 MSLVFIEPAKISDLNDIMTIINSSKQFLKEAGSNQWQNGYPDENIIKEDINNGHGWILKV NGKTAGYAACIIGKDPTYANIEDGEWANDEDPYATIHRLAISGDYRGQHLSSQLMSNLIS AMRVKGIENYRIDTAPINKIVQKLATSSGFKYRGIIEVDNEPIDPERVAYELNLIDYE >gi|297149550|gb|ACGQ02000001.1| GENE 81 70238 - 71464 1444 408 aa, chain + ## HITS:1 COG:AGl1145 KEGG:ns NR:ns ## COG: AGl1145 COG2814 # Protein_GI_number: 15890690 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 11 398 46 415 431 140 25.0 4e-33 MLKYRIQSILFVLVAFMLGCNEYMIVGVLKDIHSDMGTPLATLGILVTLFALVYSICTPF ISLLSARFKRHNVLFALLVIFLVANTWTAIAPNFISLLLSRVLAGATAGSIISITVVMAS FIAPPEKKAALISWVFAGFSIANVAGVPIGNTIARVFSWRDSFWMVTILTVIIFVLLFIY APKDTPQSHAGTPEEAAKISADRKKYIVHPITITNALFIICVTAAQYSFYTYITEIITKY LHFTDSVLSILLFILGIVSIFGNKLGGYYADRGNMQDIPFLYVIMPVSLVLIGLLINLTN PQSFPLILGIIGFVLIAIVCIVNVSYGANVTVLFLDLANEQFPGALDLSSTFNPVFSNFG IAVGSFVSSMAIGSGLFNIGNIVFISAIFGFCSLALVLRLKKLTKEDM >gi|297149550|gb|ACGQ02000001.1| GENE 82 71497 - 73080 947 527 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 3 521 4 528 535 137 28.0 6e-32 MSLKYVKRTHSIIFIILTILRSLEVVFIANITQQLFNWVNDKKISLINLIIVAVIGLIIF WIINLIYEWWYSRIIKEADYNIKSITTKYLIFSEKNTDFLDTSFFTNDLKQIEERYIAAE LEIVTSAIQFLSAVIAALFGSIPLTIIFLLVSFIPGISQKFFGKIIEKKAENWEKKNSIY TERIKETEKTTQVFKLYDQENILWKRIKKVSNDLETSLQRLNFVRGTSNDTVSDLAYLFI TVLPIAVGVYLVSVGNITFGTLIMVSQLSNNFINPLVNITMYLNDRRSSKPMWSKVIVAT KLIEKQHSSKLSFKELNVKNASLKVGNKKLFSNLSFNIKSGEKVLIVAPSGWGKSTFLKA LIGQVKINGGTYVIDNEELNGNFNKAHSYFSMINQEPKLLNDTILFNITLGKNISRNEIN SAIDKAGLKDLIKERGLDYVINKSGENLSGGQKQRIEIARAIIFKRPIMLADEATSSLDE RTSLNIHKLILLNKTATVIEVGHHISEEEKLLFNRVINLENIADKAI >gi|297149550|gb|ACGQ02000001.1| GENE 83 73249 - 74058 563 269 aa, chain - ## HITS:1 COG:no KEGG:LJ1729 NR:ns ## KEGG: LJ1729 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 268 1 266 268 125 33.0 1e-27 MTIGSLLKHQRIAMGLTQKEFSNGIISAAHYSKIENNKHEISATDLFLLLKQNQIDLIDF YNDLYFSNDKVDIINKSILISQAFYKKDKEKVRLLNNLIQNSSVSEEEKLRASLMQAILD GTLADMSNKMKKRIKKSLFEHDYWFQNERYLKLLSNSLIVFDNIEIQYYFNQIYEAYYNE IDIQPYGLLKIIAAISINCLHITYVRHDNIIEKKVVELLDKFPQVPDFFVYQTIKNYYVK LFDGKKEDAETIKQFMKQNGLNGYVENLA >gi|297149550|gb|ACGQ02000001.1| GENE 84 74273 - 74668 668 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525625|ref|ZP_03955674.1| 30S ribosomal protein S9 [Lactobacillus jensenii JV-V16] # 1 131 1 131 131 261 100 3e-68 MAQQAAYAGTGRRKNSVARVRLVPGNGKITVNKKDVTDYIPFPNLVQDLKQPLALTETEG QYDVVVNVNGGGFSGQAGAIRHGIARALLEIDPDFRGPLKKAGLLTRDPRMKERKKPGLK KARKASQFSKR >gi|297149550|gb|ACGQ02000001.1| GENE 85 74685 - 75155 799 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525626|ref|ZP_03955675.1| 50S ribosomal protein L13 [Lactobacillus jensenii JV-V16] # 1 156 1 156 156 312 99 2e-83 MSNCKKTEEFKLRTTPLAKTSEIERKWYVIDATDIALGRLSTVVATILRGKNKPQYTPNV DTGDNVIIINAAKLKLTGKKATDKIYYHHSDFRGGLKAVSAGELLAKNPVRLVELSVKGM LPKNTLGHQEFLKMHVYAGAEHKHEAQKPEVLEINK >gi|297149550|gb|ACGQ02000001.1| GENE 86 75225 - 76013 929 262 aa, chain - ## HITS:1 COG:SP1599 KEGG:ns NR:ns ## COG: SP1599 COG0101 # Protein_GI_number: 15901439 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 250 1 249 249 233 47.0 2e-61 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQRIVVHGSGRTDAGVHALG QVIHFDFPNDNIPANRMVLALNSMMPTDIIFKDAEIVNEDFHVQYSTHGKWYRYIVNQDR FVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSFAASGGQIIDKVRTIYYVKIWQK SEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVRNTAPASG LYLYHVFYEEVPEKYRLDKKNN >gi|297149550|gb|ACGQ02000001.1| GENE 87 76013 - 76810 638 265 aa, chain - ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 264 2 265 266 251 49.0 9e-67 MSKIIIGRFIPGNSVIHKMDSRGKLIFTFIFIFIIFLANNWQSYLVLVLACLLAIVATKI NLRFFWDGIKPLLGLIFFTSFLQLFFTSGGEIYWKWGILSVSSYGVINSIYIFLRFTLII LMSTVMTLTTAPLAIADAMEWMLKPLKYLHVPVAEIALIMSIALRFVPTLFDQTIKIMNA QRSRGADFNDGGLIKRIRAVVPLLVPLFINSLEVAIDLSTAMEARGYRGSEGRSKYRVLE WSKYDLINLGYFVLLLILLLSFRSK >gi|297149550|gb|ACGQ02000001.1| GENE 88 76803 - 77666 994 287 aa, chain - ## HITS:1 COG:L76755 KEGG:ns NR:ns ## COG: L76755 COG1122 # Protein_GI_number: 15672260 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Lactococcus lactis # 3 287 2 287 288 286 49.0 4e-77 MSIKFEKVDYIYSPKTPFEKKALDNVSFELKENSFVAIIGHTGSGKSTLMQHFNALLKPS AGQIKIAGFTLNAQTSNKHLKKLREKVSLVFQFPEAQLFESTVLKDIEYGPKNFGYSEQE ASELAKKWLKKVGLPVSVGESSPFDLSGGQMRRVAIAGVMAYEPDILCLDEPAAGLDPQG KQEMFNLFKQYQKEGHTVILVTHNMDDVAEYADDVLVLEKGKLLRHGTPEEIFSNSEWLL QHHLAMPTANLFAKKLVENNLNIDLNPLTIDRLANQIEQKLVKENNE >gi|297149550|gb|ACGQ02000001.1| GENE 89 77642 - 78493 724 283 aa, chain - ## HITS:1 COG:SP2221 KEGG:ns NR:ns ## COG: SP2221 COG1122 # Protein_GI_number: 15902025 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 279 1 274 275 271 51.0 1e-72 MNKIIEIKNLTFSYPNTSNPILNNLSFSVKENSWTTLIGHNGSGKSTIARLLIGLLVAEK DKKDPYAIKIDGMELNDENIWKIRDKVGIVFQNPDNQFVGSTVEDDVAFGLENKGVSREK MLPLVDEAISQVGMEEFKNSEPAQLSGGQKQRVAIAGILAVKPKIIILDEATSMLDPEGK KSILNLIKKIKQQYNLTVISITHDLEEVEKADEVLVLDNGKIILQDKPEVIFDNANLLNE IGLGLPFIYQLAEKLRQKGFLISKQANTQEKLVKEICQLSLKK >gi|297149550|gb|ACGQ02000001.1| GENE 90 78663 - 79046 620 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525631|ref|ZP_03955680.1| 50S ribosomal protein L17 [Lactobacillus jensenii JV-V16] # 1 127 1 127 127 243 100 1e-62 MAYRKLGRDSAHRKAMLREMTTQLIINERIVTTEARAKEIRKTAERMITLGKRGDLSARR QAAAFVRNEIADVKQENDAVVVKSALQKLFSDIAPRYKDRNGGYTRIMKLATARRGDGAP MVILELV >gi|297149550|gb|ACGQ02000001.1| GENE 91 79074 - 80015 1230 313 aa, chain - ## HITS:1 COG:BH0162 KEGG:ns NR:ns ## COG: BH0162 COG0202 # Protein_GI_number: 15612725 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus halodurans # 1 313 1 314 314 385 65.0 1e-107 MIEFEKPNITVVDQEDAYGKFVVEPLERGFGTTLGNSLRRVLLTSIPGTALSYIQIDGVL HEFSTIPGVREDVTKIVLNLKKLELKSVADEEKIVELDVEGPATVTAGDLKVDSEVTVLN PDQYICTVAEGGHLHMQIAVKNGRGYVPASENKTDDMPIGVIPVDSLFSPIKKVNYQVES TRVGKRDDYDKLTLEVWTDGSITPSDALSFASKILIEHFKVFKFSDAQTDFGGEVMVEKE DDKKERQLEMTIEELDLSVRSYNCLKRAGINTLQELTDKSESDMMRVRNLGRKSLEEVKN KLADLGLSLRHED >gi|297149550|gb|ACGQ02000001.1| GENE 92 80061 - 80450 652 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525633|ref|ZP_03955682.1| ribosomal protein S11 [Lactobacillus jensenii JV-V16] # 1 129 1 129 129 255 100 2e-66 MPAKKNTRKRRVKKHVESGVAHIHSTFNNTLVMITDVQGNAVAWSSAGALGFKGSRKSTP FAAQMAAEAAAKASMDQGMKHVEVSVKGPGAGREAAIRSLQATGLEITAIRDVTPVPHNG SRPPKRRRV >gi|297149550|gb|ACGQ02000001.1| GENE 93 80480 - 80830 586 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525634|ref|ZP_03955683.1| 30S ribosomal protein S13 [Lactobacillus jensenii JV-V16] # 1 116 1 116 116 230 100 1e-58 MARIAGVDLPREKRIVVALTYIYGIGEPTAKKICADAGVSEDIRSKDLTPEDQEKLRAEV DKYRVEGDLRREISMNIKRLVDIGSYRGVRHRRGLPVRGQNTKNNARTRKGSKRSR >gi|297149550|gb|ACGQ02000001.1| GENE 94 80857 - 80973 211 38 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525635|ref|ZP_03955684.1| 50S ribosomal protein L36 [Lactobacillus jensenii JV-V16] # 1 38 1 38 38 85 100 3e-15 MKVRPSVKPMCEHCKVIKRNGRVMVICPANPKHKQRQG >gi|297149550|gb|ACGQ02000001.1| GENE 95 80988 - 81209 299 73 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 71 1 71 72 119 83 2e-25 MAKDDVIEVEGKVVDTLPNAMFKVELENGATILAHVSGKIRMHYIRILPGDKVTVELSPY DLTKGRITYRFIK >gi|297149550|gb|ACGQ02000001.1| GENE 96 81281 - 81934 694 217 aa, chain - ## HITS:1 COG:BH0155 KEGG:ns NR:ns ## COG: BH0155 COG0563 # Protein_GI_number: 15612718 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Bacillus halodurans # 2 214 1 212 217 239 57.0 3e-63 MINLILLGLPGAGKGTVSERIVDKYKLAHISTGDMFREAMANETPVGLEAKSYIDKGNLV PDEVTAKLVEERLAKPDTNNGFILDGFPRTTAQAEMLEDITKRLNKPLTNVIALDVEESV LVDRLSARFMCKACGATYNKFSKKPKVEGTCDRCGGHEFYQREDDKPEVVRNRLQVNEKM NAPLRDFYQQKGLLSVVNGEQSPEKVFEDTDAILGKD >gi|297149550|gb|ACGQ02000001.1| GENE 97 81948 - 83240 1473 430 aa, chain - ## HITS:1 COG:SPy0073 KEGG:ns NR:ns ## COG: SPy0073 COG0201 # Protein_GI_number: 15674307 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecY # Organism: Streptococcus pyogenes M1 GAS # 5 429 6 430 434 429 54.0 1e-120 MFSTLKNAFKDKEIRNKIFFTLFILLLYRIGANIAVPGVNAKAINQVAQTGLVPMLDTVS GGGLDNYSIFSLGVSPYITAQIVIQLLQMDIVPKLVEWGKQGEVGRRKTNQVTRYLTLVV AFIQSIGITLGFNVLTQMGLVKSQTPQTYIQIAIIMTAGTFLLTWLGDEITDKGLGNGVS VIIFAGIISRLPNGIAQIFKEDVSNASSSDRWKGIVFFVAIIIAILVITKVVTWVEQAIR RVPIQYTRRAAVSGSESFLPLKVNVSGVIPVIFASSFIITPSTILMAFQSHQGEQWYQIL TQIFSLQTTPGAVIYTLLIVLFTFFYAFVQVNPEKLSENLQKQSAYIPSVWPGKDTQDFV SKLLMRLSTVGSVYLGLVALLPQLATNIWGLPSSIGLGGTSLLIVIGVVLELSRQVNGLL MKREYVGFIR >gi|297149550|gb|ACGQ02000001.1| GENE 98 83240 - 83680 734 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525639|ref|ZP_03955688.1| 50S ribosomal protein L15 [Lactobacillus jensenii JV-V16] # 1 146 1 146 146 287 100 7e-76 MKLHELKPAEGSRRSRKRVGRGTSSGYGKTSGRGQKGQLARQGGHTRPGFEGGQMPLFRT MPKRGFKNINRKEYAVINLDDLNKFENGSEVTIADLKAKGLVKKELSGVKLLANGELKVK VTVKVNKASKAAEEAVNAAGGSVEVI >gi|297149550|gb|ACGQ02000001.1| GENE 99 83703 - 83888 294 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525640|ref|ZP_03955689.1| 50S ribosomal protein L30 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 117 100 8e-25 MTDLKITLIRSAAHRLPNQRKVVKALGLGRINSSVVLPDNAATRGALMKIAHLISVEEVN K >gi|297149550|gb|ACGQ02000001.1| GENE 100 83899 - 84414 848 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525641|ref|ZP_03955690.1| 30S ribosomal protein S5 [Lactobacillus jensenii JV-V16] # 1 171 1 171 171 331 100 4e-89 MANRNDSRKDRRPKDEIEDQLVAVNRITKVVKGGRRMRFAALVVVGDKKGHVGFGTGKAQ EVPEAIRKAVEAGKKNMISVPTVGTTIPHEVIGHFGSGNILLKPAEAGSGVAAGGAVRIV MDMAGIADITSKSLGSNTPINVVRATIDGLKKLKTREDVLKLRESAKSLQD >gi|297149550|gb|ACGQ02000001.1| GENE 101 84432 - 84791 580 119 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525642|ref|ZP_03955691.1| 50S ribosomal protein L18 [Lactobacillus jensenii JV-V16] # 1 119 1 119 119 228 99 5e-58 MISKPDKNKLRLKRHKRIRGKISGTAERPRLSIFRSNKNIYAQIIDDVAGVTLASASTLD KSVSAEGTKLEQAQAVGKAIAEAAKKNNITTVVFDRSGYLYHGRIQALADAARENGLEF >gi|297149550|gb|ACGQ02000001.1| GENE 102 84814 - 85344 892 176 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525643|ref|ZP_03955692.1| ribosomal protein L6 [Lactobacillus jensenii JV-V16] # 1 176 1 176 176 348 100 4e-94 MSRIGFKVINVPDSVTVTKEGNVITVKGPKGELSREFSPKITFEQKDGEITVSRSSENDK ALHGTSRANLASMIEGVVDGYKKNLKLIGVGYRAQAQGNKLVLNVGYSHPVEFETPEGIT VKTPSAVDIEIEGISKQVVGQFAAEVRAVRPPEPYKGKGIRYVDEYVRRKEGKTGK >gi|297149550|gb|ACGQ02000001.1| GENE 103 85369 - 85767 667 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525644|ref|ZP_03955693.1| ribosomal protein S8 [Lactobacillus jensenii JV-V16] # 1 132 1 132 132 261 100 4e-68 MVMTDPIADYLTRIRNANMAKHDSVEIPASTIKKSLSEILKQEGFIRDYEVTDDNKQGMI KIFLKYGPNGERVISGLKRISKPGLRNYVGAENLPKVLNGLGIAIVSTSAGVITDKEARE KNVGGEVLAYVW >gi|297149550|gb|ACGQ02000001.1| GENE 104 85791 - 85976 335 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525645|ref|ZP_03955694.1| 30S ribosomal protein S14 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 133 100 1e-29 MAKTSLKVRNHRPAKFSSRAYTRCERCGRPHSVYRKFGLCRICLKDLAHKGQIPGLKKAS W >gi|297149550|gb|ACGQ02000001.1| GENE 105 85991 - 86533 897 180 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525646|ref|ZP_03955695.1| ribosomal protein L5 [Lactobacillus jensenii JV-V16] # 1 180 1 180 180 350 100 9e-95 MANHLAVQYKEEVASALAEKFGYKSTMQIPKIEKIVLNMGVGDAVSNAKNLDEAVEELTL ISGQKPLITKAKKSIANFRLREGMSIGAKVTLRGDRMYDFLDKLINVSLPRVRDFRGVST RSFDGRGNYTLGIKEQLIFPEIDFDKVNRTRGLDVVIVTTAQTDEEARELLQQFGFPFAK >gi|297149550|gb|ACGQ02000001.1| GENE 106 86548 - 86862 526 104 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525647|ref|ZP_03955696.1| ribosomal protein L24 [Lactobacillus jensenii JV-V16] # 1 104 1 104 104 207 100 1e-51 MFVKTGDKVKVIAGKEKGKEGTVIRVDRKNDRVVVKGLNMIKKHEKPSQTNQNGGVVEKE GSIHVSNVMLIDPESGKPTRIGHEIVDGNKVRIAKVSGKAIDKK >gi|297149550|gb|ACGQ02000001.1| GENE 107 86884 - 87252 600 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525648|ref|ZP_03955697.1| ribosomal protein L14 [Lactobacillus jensenii JV-V16] # 1 122 1 122 122 235 99 3e-60 MIQNESRLKVADNSGARELLVIRVMGGSKRKTGNIGDIVVCAVKQATPGGVVKKGDVVKA VIVRTKSGARREDGSYIKFDENAAVVINADKSPRGTRIFGPVARELREHDFMKIVSLAPE VL >gi|297149550|gb|ACGQ02000001.1| GENE 108 87285 - 87551 450 88 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525649|ref|ZP_03955698.1| 30S ribosomal protein S17 [Lactobacillus jensenii JV-V16] # 1 88 1 88 88 177 98 6e-43 MSETIERNRRHVYQGRVVSDKMDKTITVVVDTYKNHPVYKKRIKYSKKYYAHDVNNDAKV GDTVRIMETRPLSRQKRYRLVKIVKRRV >gi|297149550|gb|ACGQ02000001.1| GENE 109 87574 - 87771 316 65 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525650|ref|ZP_03955699.1| ribosomal protein L29 [Lactobacillus jensenii JV-V16] # 1 65 1 65 65 126 100 2e-27 MKAKDIRSLTTDQMLEKEKQYKEELFNLRFQQATGQLENTARLRQVRKNIARIKTVLSEE ALKQN >gi|297149550|gb|ACGQ02000001.1| GENE 110 87761 - 88201 754 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525651|ref|ZP_03955700.1| 50S ribosomal protein L16 [Lactobacillus jensenii JV-V16] # 1 146 1 146 146 295 100 4e-78 MPLVPKRVKHRREFRGKMRGAAKGGKTIAFGEYGLMALESHWITNRQIEAARVAMTRYMK RGGKVWIRIFPHKSYTAKGVGVRMGSGKGAPAGWVAVVKREKIMFEIGGVSEEVAREALR LASTKLPIKCKFVAKSTEVGGESNEG >gi|297149550|gb|ACGQ02000001.1| GENE 111 88201 - 88875 1146 224 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525652|ref|ZP_03955701.1| ribosomal protein S3 [Lactobacillus jensenii JV-V16] # 1 224 1 224 224 446 100 1e-123 MGQKINPLGFRLGVNRDWEAKWFADKDYKETLNEDLRIRDFVAKKLKDASVSTVEIERAA NRINISIHTAKPGMVIGKGGSEVEALRKQLNALTEKQVHINIVEIKKPDLDAELVGDSVA RQLEARIAFRRATRQATQRAMRAGAKGIKVQTAGRLNGADMARREWHTEGSVPLHTLRAD IDYAWVQALTTYGQIGVKVWINRGEILPGRKNRPASKRSKGGNK >gi|297149550|gb|ACGQ02000001.1| GENE 112 88889 - 89242 565 117 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525653|ref|ZP_03955702.1| 50S ribosomal protein L22 [Lactobacillus jensenii JV-V16] # 1 117 1 117 117 222 100 3e-56 MAEQITSARAEARTVRIAPRKARLVIDLIRGKSVAEALAILQFTPRAASPIVEKVLRSAI ANAEHNYDLESANLYVSEAYVNEGATLKRFRPRAKGMASPINKRTSHVVVVVSEMND >gi|297149550|gb|ACGQ02000001.1| GENE 113 89266 - 89541 473 91 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525654|ref|ZP_03955703.1| 30S ribosomal protein S19 [Lactobacillus jensenii JV-V16] # 1 91 1 91 91 186 100 1e-45 MSRSIKKGPFADEHLLKKVAAQENAEKKQVIKTWSRRSTIFPSFVGLTIAVYDGRKHVPV YVTEDMVGHKLGEFVPTRTFRGHKADDKATK >gi|297149550|gb|ACGQ02000001.1| GENE 114 89563 - 90399 1453 278 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525655|ref|ZP_03955704.1| 50S ribosomal protein L2 [Lactobacillus jensenii JV-V16] # 1 278 1 278 278 564 99 1e-159 MAIRKYKPTTNGRRNMTSSDFAEITKKKPERTLLESQSHTAGRNSYGHITVRHRGGGHKQ KYRIIDFKRNKDDVKAVVKAIEYDPNRTANIALLHYTDGIKAYILAPKGLKVGDIVESGV EADIKPGNALPLANIPTGTSIHNIELKPGKGGQLVRSAGTEGQVLGTDGRYTLVRLQSGE VRRILSTCRATIGVVGNEQHSLIQLGKAGRKRWLGKRPQSRGSVMNPNDHPHGGGEGKAP VGRPQPMTPWGKKSRGIKTRNTKKASEKMIIRHRKGNK >gi|297149550|gb|ACGQ02000001.1| GENE 115 90415 - 90711 490 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525656|ref|ZP_03955705.1| ribosomal protein L23 [Lactobacillus jensenii JV-V16] # 1 98 1 98 98 193 100 1e-47 MNAHDIILRPVITEKSTNLMDNKKYTFDVLLTATKTQVRNAVEEIFDVKVKSVNIMNVRG KDKRVGRYTGKTARRRKAIVTLTNDSNDIKIFAEEDNK >gi|297149550|gb|ACGQ02000001.1| GENE 116 90711 - 91328 1033 205 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525657|ref|ZP_03955706.1| 50S ribosomal protein L4 [Lactobacillus jensenii JV-V16] # 1 205 1 205 205 402 100 1e-110 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQD NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSDNENVQLSARNLENVKVVPVNGLN VVDAVNYDKLILTQDAVKRIEEVLA >gi|297149550|gb|ACGQ02000001.1| GENE 117 91343 - 91972 1067 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525658|ref|ZP_03955707.1| 50S ribosomal protein L3 [Lactobacillus jensenii JV-V16] # 1 209 1 209 209 415 100 1e-114 MTKGILGRKVGMTQIFTDKGVLVPVTVIEATPNVVMQVKTVESDGYEAVQLGYQDKREVL SNKPEKGHADKAKTSPKRFIREIRGVELKDYEVGSEVTVDTFKEGDVVDVTGTTRGHGYQ GNIKRHGQSRGPETHGSRYHRIPGSMGSIINRVPKGKKLPGHMGVKTVTIQNLVIEKVVA DKNVLLVKGNVPGAKDSLIVVKSATKADK >gi|297149550|gb|ACGQ02000001.1| GENE 118 92000 - 92434 731 144 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525659|ref|ZP_03955708.1| 30S ribosomal protein S10 [Lactobacillus jensenii JV-V16] # 1 144 1 144 144 286 99 2e-75 MHIFVVALTQKVAAHQAALPQWCVGNFCRASHLLKKTQGGNLMASQQIRIRLKSYEHGIL DESAAKIVATAKRTGAEISGPVPLPTERTLFTVLRSPHTNKDSREQFEMRTHKRLIDILN PTPKTVDSLMKLDLPSGVDIEIKL >gi|297149550|gb|ACGQ02000001.1| GENE 119 92615 - 93088 345 157 aa, chain - ## HITS:1 COG:FN2106 KEGG:ns NR:ns ## COG: FN2106 COG1288 # Protein_GI_number: 19705396 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 2 156 364 518 518 137 48.0 7e-33 MIDAFVNGASELLGVALTIGLARGVSIIMDNSHTSDTIMNFFSKQISGLPPLVFIWLLFI VYIVLGFFIQSSSGLAVLSMPIMAPLANVVGIDRASVIDAYNLGQGYISLIAPTGLILMG LMMVGIDFSKWFKWCWKLLVIEFILCLMFLALGLLVY >gi|297149550|gb|ACGQ02000001.1| GENE 120 93090 - 94145 1035 351 aa, chain - ## HITS:1 COG:FN2106 KEGG:ns NR:ns ## COG: FN2106 COG1288 # Protein_GI_number: 19705396 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 1 346 14 354 518 276 44.0 6e-74 MVKTEQKKHRFPTAYTVIIIVLLLIELLTYFIPAGNYATLSYNSENNNFVITKPNGDTQK IAASQNNLDKYKINIPIQKFKDGTIFKPVAIPNSYERISAQKPNLWQAIVNFFTVQVQGI VQSIDIIAFVLILGGCIGIVNANGAINSGIAALSKKIKGKQVLLIVVIMAFVSIGGTTYG LAEETMAMYPILIPVFLMAGYDTMTVIGTVFLADSIGTMVSTINPFSTIIASNAAGVNFS HALPMRIIMWAFCTFIGMLYVIHYAERVRKHPETSYVYDQYESDRKKFLSSDNLQNPKFT WQQKLTLSIFAIAFIVMIWGVQSQGWYFTEISVIFLAAGYLMAIFFRPRRA >gi|297149550|gb|ACGQ02000001.1| GENE 121 94295 - 96385 2990 696 aa, chain - ## HITS:1 COG:lin2803 KEGG:ns NR:ns ## COG: lin2803 COG0480 # Protein_GI_number: 16801864 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Listeria innocua # 4 694 3 691 695 989 71.0 0 MAKREFPLEKTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETHEGDSQMDWMEEEKER GITITSAATTAQWKDYRVNIIDTPGHVDFTIEVERSLRVLDGAVTVLDAQSGVEPQTENV WRQAETYGVPRIVFVNKMDKIGANFDFSVKTLHERLNANAHAVQMPIGAEDQFEGVIDLI NMVADVYDEDKLGAKWDTVPVPDEYKEEAEKRRGELIEAVADVDDDIMDKYLGGEEITNE ELKAAIRKATLDLKFFPVFAGSAFKNKGVQMMLDGVVDYLPSPLDVKPYVAHDPKDGSEV ELLADDSKPFAALAFKIATDPFVGRLTFIRVYTGSLQSGSYVLNASKNSRERVGRLLQMH ANSRTEISEVFSGDIAGAIGLKNTTTGDSLTDPDHPLILESLEVPDPVIQVSIEPKSKAD RDKLDVALQKLTEEDPTFKAETNAETGQTLIAGMGELHLDIMVERMKREFHVEATIGEPQ VAYRETFTKPTKAQGKFVRQSGGKGQYGDVWIEFTPTKEGEGYEFEDAIVGGVVPREFIP SVDAGLQEAMKNGVLAGYPLIDVKAKLYDGSYHEVDSSEAAFKVAASLALKNAAPKAGAV ILEPIMKVQVITPEEYLGDVMGSITARRGNMDGMEDRSGAKVLNAMVPLSEMFGYATTLR SSTQGRGTFTMVFDHYSPTPKSIQEEIIKKRGGNAE >gi|297149550|gb|ACGQ02000001.1| GENE 122 96422 - 96892 794 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525664|ref|ZP_03955713.1| ribosomal protein S7 [Lactobacillus jensenii JV-V16] # 1 156 1 156 156 310 100 8e-83 MPRKGHVAKRTVLADPIYNSKLVTKLINHLMIDGKKAKASSILYDAFSIIQDKTGKEPLE VFEEAMNNVMPVLEVRARRIGGSNYQIPVEVRPERRTTLGLRWLVSYARLRNEHTMDERL ANEIIDASNNTGSAVKKREDVHRMAEANRAFAHYRF >gi|297149550|gb|ACGQ02000001.1| GENE 123 96907 - 97314 699 135 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525665|ref|ZP_03955714.1| 30S ribosomal protein S12 [Lactobacillus jensenii JV-V16] # 1 135 1 135 135 273 100 8e-72 MPTINQLVRKGRHSKTTKSKSPALNYGYNSMKKEQVFNPAPQMRGVATRVGTMTPKKPNS ALRKYARVRLSNLTEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGV DGRKQGRSKYGAKKG >gi|297149550|gb|ACGQ02000001.1| GENE 124 97497 - 98180 420 227 aa, chain + ## HITS:1 COG:aq_1601 KEGG:ns NR:ns ## COG: aq_1601 COG1989 # Protein_GI_number: 15606720 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Aquifex aeolicus # 8 216 11 233 254 65 26.0 6e-11 MVLNIINFYFGACLASFISVIVQKDGLRWRRSYCLSCKNPLTWSELFPIFSFIFQKGTCR HCKKPIPHFLLFIEIVGGITFLKTDWYSKSGLIEFFLCLLLLTMAIFDYYYQEIPFSIFL ISFLIVIIKDLLFEQISTLITSVLATSVMIIALGILVLLKKFGLGDLFFYLIISFYYSEY LANLVFLFASLAVLTLYPKLKAQNQTHLSLPFLPFLFFSLSILKLLM >gi|297149550|gb|ACGQ02000001.1| GENE 125 98250 - 101918 5164 1222 aa, chain - ## HITS:1 COG:SPy0099 KEGG:ns NR:ns ## COG: SPy0099 COG0086 # Protein_GI_number: 15674322 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 1 1189 1 1190 1213 1709 69.0 0 MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPSKDWAC ACGKYKGIRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDV SPRALEEVIYFAAYIVIDAGDTDLEPKSLLTEAEYREKKAKFGNRFVAKMGAEAIKELLQ NVDLDKEVKSLKAELQTATGQKRTRAIRRLDILNAFKDSGNKPEWMVMDTVPVIPPDLRP MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLHAPNIIVQNEKRMLQEAVDALIDNGR RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP MALELFKPFVMHELVKRGVATNIRNAKRKIDREDDDIWDILEYVIKERPVLLNRAPTLHR LGIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL APKDGKPIVTPGQDIVLGNYWLTQAERGREGEGMIFNSPAEATMAYANGDIHFHTRIGLA ADSMPEKTWPKGYEHGVFVTTYGKMIFNQIFPKDFFYVNDPTQDNLTHPLDVKYFLQPGE DIHEKLDNMDLGTPFKKGFLSDAIAAVYKEYKVQRTSDFLDDMKELGYTACTTSGLTIGM ADIPMVSDKDDIVAKAHKKVDVVSKQFRRGLITEQERHDRVISIWNACKDEVQNEVAGIF DPRNPISVMADSGARGNISNFTQLAGMRGLMAAPNGGMMEIPVTSNFREGLTVLEMFMST HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREEDCGTDRGITVHAIKEGDEMIEPLF DRLVGRYTARSVFDPETHEVIAPKGVMMDEELAQEIVDRGVKEVTIRSVFTCNTQHGVCQ KCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTMRNFHNGGVAGAEDITQGLPRVQEL FEARNPKGRATISEVTGVVASIEENPAEHTREITVEGKTDTRTYSVPYTASVAVAEGDEV VRGDKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIADKHVEVMARQMLQKV RVLDPGETDILPGELMDIGEFKDRNKEVIISGGIPATAQSVILGITKAALETNSFLSAAS FQETTRVLTDASIRSKNDPLLGLKENVIIGKIIPAGTGMPVYRSMEPQADVPKPQAVYSI ADIERQLAEENKIDLKSLNKNK >gi|297149550|gb|ACGQ02000001.1| GENE 126 101930 - 105568 4556 1212 aa, chain - ## HITS:1 COG:lin0285 KEGG:ns NR:ns ## COG: lin0285 COG0085 # Protein_GI_number: 16799362 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Listeria innocua # 6 1166 6 1167 1184 1667 70.0 0 MFSLDGHLVNYGQHRTRRSFSHIKEVVKLPNLTDVQTESYKWFLNEGISEVFEDIMPIND FSGKLSLDFVGYKLQDAKSTIDEARNHDANYAAPLRVTLKLTNHETGEIKTQDVFFGDLP LMTRSGSFVINGAERVIVSQLVRSPGVYYNCDVDKNARQIFGATVIPNRGAWLEYETDAK NISYVRIDRTRKLPISVLIRALGFGSDSEIQDIYGTNDTLQFTLEKDVHNNPADSRVAEA LKEIYERLRPGEPKTTDSSRSLLFARFFDSRRYDLAPVGRYKINKKLSLKSRLLNQTLAE TLADPDTGEIIAKKGTIVTHAVMETLEKYLDRDDFKMVTYTPSDEGVMQDPITVQEIKVF SKVNPEREVKLISNGHIDADVKCITPADILASINYFFVLQDEIGSTDDIDHLGNRRIRRV GELLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPIVASVKEFFGSSQLSQFMD QNNPLGELTHKRRMSALGPGGLSRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSMA TYAIINKYGFIETPYRRVSWETHKVTDKIDYLTADVEDNYIIAGANTPLNEDGSFKENLI LARHKDDNVEVTPDKIDYMDVIPKQVVSVTSACIPFLENDDSNRALMGANHQRQAVPLIN PHAALVGTGMEYRAAHDSGDALVAEAAGVVEYVDADQIRIRREDGTLDKYELEKYRRSNA NKNYNQTPNVKKGEKIVEGEVIANGSSMAEGELALGQNPLIAFMTWNMYNYEDAIMISER MVKDDVYTSIHIEDYESEARDTKLGPEEITREIPNVGEDALKDLDEQGIVRIGAEVKDGD ILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQNVEVFTREGGDE LSPGVNTMVRVYICQKRKIQVGDKMAGRHGNKGTIAVVVPEEDMPFLPDGRPVDICLNPM GVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGADEDEVYNTLREAGMSKDGKTVIYDG RTGEPFHNRVSVGVMNYLKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEV WALEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGERIPKPGVPESFRVLVKELQSLGL DIRVLDMDHKEIELRDMDEDSSEHLNIDTLSRLAEEQEKKKLAEEATKSEETTSEQSATS SVDQASDDTVSK >gi|297149550|gb|ACGQ02000001.1| GENE 127 105787 - 108270 2094 827 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 823 6 815 815 811 51 0.0 MEYSYSSSANQVLAIAKEQAQNFQHRMIGTEHVLLALVIESSGDAGKILRQWNVTSGDVR REIERYTGYGSASKSSYMEMSPRLNMTLNYAKRAAQDGGTKEVKTLHILLGLISTEQVLA AMILKNLNVDLDHLRQDILDDLSEDSGDLSQESDDFFDNLGLNQNKGKGNSKTPTLDSVS INLNKQAREGEIDPVIGRDLETKRVIQILSRRTKNNPVLVGEPGVGKTAVAQAIASCIVK KEVPEDLLDKRVMALDIGSLVAGTKYRGEFEDRMKKILKEIRTDGKVILFVDEMHTLIGA GGAEGAIDASNILKPSLARGDIQMIGATTFDEYQKYIEKDQALARRFQQVRITEPSKEDT LHILEGLKPKYEGFHHVQITEAALKAAVDLSTRYLSNRFLPDKAIDLVDEASATVKINNA VGSNKELQSLDNQLNKVAKQKRAEVEKQNFVQAANLQADEDKLEKQKQALLNKLKESAYR KAVVNEEDIARVVSEWTGVPATQMKKDDTRKLINLEATLHKRVIGQNKAVQAVAKAIKRS RSGIKDENRPIGSFLFLGPTGVGKTELAKAVASAVFGSENNLVRVDMSEYMDTIASSKLI GSAPGYVGYEEGGQLSEQVRRHPYSVVLLDEVEKAHPDVFNLLLQVLDDGFLTDSKGRKV DFRNTVIIMTSNLGSRSLVSDKTVGFTTSEVSQEKERISKVQAATKDFFRPEFLNRIDAT IVFDQLQSSDLRKIVTLLTQKVVARLAKKQITIKFSPAALDVIAKAGFDPENGARPLRRA IQNLVEDKLSDMLISSELVSGQTLKIGAAKGQLKFTVSETKKAVLSK >gi|297149550|gb|ACGQ02000001.1| GENE 128 108368 - 109000 605 210 aa, chain - ## HITS:1 COG:no KEGG:LBA1353 NR:ns ## KEGG: LBA1353 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 207 124 333 342 261 60.0 8e-69 MILVGFEIQFFTQVYEQLFPEKITFLVIVADTVIGLLLFTLGSSLYMGPKLGVAPYDAIA PIFSKRLNSSYKITRIIQDVLFMVGALIMGGPVGFATIIVAFFTGPLITWWNEHVSDPLV DFIDHLTRPDTRNKVTVLLSAMGRRTYESVARTYEATEVMQARLGRYSNSDLKTQQKIAR RNLANSKQTYENCLAQYKMIEEELNKRKNQ >gi|297149550|gb|ACGQ02000001.1| GENE 129 109002 - 109214 289 70 aa, chain - ## HITS:1 COG:no KEGG:LBA1353 NR:ns ## KEGG: LBA1353 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 63 53 115 342 97 71.0 2e-19 MSIVGVTVLSIGATFLRGGKVGLDPFTAINTGISNKLGLGLGVYQLAVNFVIFLLILWLD RQKNWNWNFC >gi|297149550|gb|ACGQ02000001.1| GENE 130 109766 - 110257 326 163 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852025|ref|ZP_05557412.1| ## NR: gi|256852025|ref|ZP_05557412.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 163 1 163 163 241 100.0 1e-62 MSKSVKVWSYTLVTILILGLARVYFKELVGSQLWLVNFAITTKTLKLFSLGATLYFFDVV MALSAVSEFEEIATFLWVRELSLIRLWRAFASRFIKYFGSLLLVHLPLISWQNMSFSLLS LLGEVIVWGVAVSIGFSKSNSMSQKISIPLLFGVLRILGMLIG >gi|297149550|gb|ACGQ02000001.1| GENE 131 110250 - 110849 732 199 aa, chain - ## HITS:1 COG:BS_ydbJ KEGG:ns NR:ns ## COG: BS_ydbJ COG1131 # Protein_GI_number: 16077516 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus subtilis # 1 198 5 214 308 123 35.0 2e-28 MLKIDNISKQFGKKQVLKDVSLELNPGERVHIIGKNGSGKSTIFKIITNILKADAGQVEL TENDYVGALIENPGFLEYESGLENLKFLGNLNHNYDEQVAMKLMEKFDLDPNDLQAVSKY SIGMRQKLGIIQAIMENQNIVLLDEPTRGIDKEGVATFVKLLDELKQEKRAVIIASHDEI PGLKYDRELLLKNGELASV >gi|297149550|gb|ACGQ02000001.1| GENE 132 110862 - 111461 304 199 aa, chain - ## HITS:1 COG:no KEGG:LEGAS_0019 NR:ns ## KEGG: LEGAS_0019 # Name: not_defined # Def: hypothetical protein # Organism: L.gasicomitatum # Pathway: not_defined # 16 191 17 191 193 65 30.0 1e-09 MPTKTKKYIRYSLIGVLALSFFAYWLLIAGMKPKYDIIFAVSFQHGLSIYLQSLLYVLVF FQVLIARKVSNAIAVRKQTKKVISKLAGLIVLEWLLFWIPFLGSYYLFKSHNFFKMGDFK FGLWILLAHMLLMLFLMLSLLLAYRLPFPYIIITLVIAITWSYHLCFEFTLILPKYSKIF DPLYRATHYIYLGICHIFL >gi|297149550|gb|ACGQ02000001.1| GENE 133 111461 - 112276 524 271 aa, chain - ## HITS:1 COG:no KEGG:LEGAS_0018 NR:ns ## KEGG: LEGAS_0018 # Name: not_defined # Def: integral membrane protein # Organism: L.gasicomitatum # Pathway: not_defined # 9 267 10 265 269 71 29.0 3e-11 MLSKRTNKIIIIALLGYLVFITYLVLSAINSELRPRTTVDANSFIYMFNEVQPFGVYSSF SLILALLIFPIVGSFAPIFIKNNNGITNVLQRSGYAKFLRKASWQTFLLGMSFSLLSEIF EIILINWNYAPIAFTNNSFYLGQFFNTFSKNSLIQLLAYMVTSSIGWGIFSVFIFACGLY IKKNPLFIVSGAVLGLILLLLPTLYGMMNYFLYAVANVTEISTLIAPGMISFAGQKAPGG IMIIWIISAILFALIAWILMMTWQKKQLRGK >gi|297149550|gb|ACGQ02000001.1| GENE 134 112335 - 112751 601 138 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|297205107|ref|ZP_06922503.1| ## NR: gi|297205107|ref|ZP_06922503.1| choline binding protein [Lactobacillus jensenii JV-V16] # 1 138 44 181 181 251 100.0 1e-65 MKLFKKNNVTAMVVAMGLVTGLTGTALASASGYWTITQETVGASGAWSSFGNANLKQSSD NVASFNGDSLPAFFGYNVRLINANGAGRSDWVNLKKDQTTYAHNNSGLKGYYYYADVRSQ PYEPNLSTVKTHFSADRK >gi|297149550|gb|ACGQ02000001.1| GENE 135 113017 - 113895 505 292 aa, chain + ## HITS:1 COG:no KEGG:LBA1934 NR:ns ## KEGG: LBA1934 # Name: mutR # Def: transcriptional regulator # Organism: L.acidophilus # Pathway: not_defined # 3 261 4 261 282 127 32.0 4e-28 MYGKTYKKIRIKQKILQKDAARDIVSVASLSHWENGKGDIPFAKFIELLKRIHLTPEEFF KLANISKPSPILKKMRKLYLARDVTGLKTLCTQQIKRYEQKRTVSNLYLMAIVCNYYHLI SNENLLLPKYQLKIISFLSDTPEWTQKHISIFENCTSLLSNKKNYALSKLLLNKWSRIEP WGKMNESGSSLYNIAFQALLNSLTILILRKSYTLARKLLNQINQIKVNNDFLHIELKRTF LANLLIYSQKKDFNAWNNLKKSVEFADFLNQKDIHSEFINLIQQVNKNSKLQ >gi|297149550|gb|ACGQ02000001.1| GENE 136 113961 - 115481 2314 506 aa, chain - ## HITS:1 COG:SP0713 KEGG:ns NR:ns ## COG: SP0713 COG1190 # Protein_GI_number: 15900610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Streptococcus pneumoniae TIGR4 # 5 492 3 491 491 662 67.0 0 MAKNELNDQLIVRREKLEELRESGLEPFGRKYERTDLARTLDEKYKGEDKDELNADMPQT KIAGRMMAKRGKGKVGFADIYDRTGKIQIYVRKDIVGEENYQIFKKSDLGDFLGIEGEVM KTDTGELTVRAHHVTFLSKALRPLPDKYHGLQNVEQIYRQRYLDLMTNHDSYMRFVHRTK IIQAIRDYLNNRDFLEVETPVLHNIPGGAEARPFITHHNALDIDLYLRIALELPLKRLIV GGMERVYEIGRVFRNEGVDTRHNPEFTELETYCAYWDFHDVMDEAEGIIKAAAKVVTDDG KVNYQGTEIDLGKPFRRVHMVDLIKEQTGVDFWKPMTLDEAKKVAEEHGIHVEPFWKVGH IINAFFEEFGEKSIVNPTFVYGHPVEISPLAKKNADDPRFTDRFEIFIMGMEYGNAFSEL NDPIDQRERFEAQMAERDAGNDEADVIDEDFVRALEYGMPPTGGLGIGIDRLVMLLTDAP AIRDVLLFPTMRPERIHDEEKDIDFR >gi|297149550|gb|ACGQ02000001.1| GENE 137 115503 - 116531 471 342 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145637283|ref|ZP_01792944.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae PittHH] # 8 323 2 316 326 186 33 2e-45 MTNTNSWKIRDITIPNRVVVAPMAGVSNSAFRVVCKEFGAGLVVCEMISDHGIIYRNKKT LDMLQVAPGEHPMSIQIFGGTEDTLLEAAQYIDQHTAADIIDINMGCPVPKVTKTDAGSK WLLDANKIYQMVHKVVQNVEKPVSVKMRLGWDRKHIFAVENALAAQEAGASMLAMHGRTR KQMYQGEADWETLHEVANALTIPFVGNGDITSPELAKKMIDEVGATAVMIGRAALGNPWE IKDMVHYLETGEKLRPQTVREKIETAKHQLDGLVELKGEKVAVPEFRQQAAYYLKGIPRS ARTRAKINEVWTRQEVYDLLDGFVEEYEKREAAKKARQAMKD >gi|297149550|gb|ACGQ02000001.1| GENE 138 116619 - 117500 1054 293 aa, chain - ## HITS:1 COG:lin0254 KEGG:ns NR:ns ## COG: lin0254 COG1281 # Protein_GI_number: 16799331 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Listeria innocua # 1 279 1 282 294 268 47.0 9e-72 MNDYLIKAIDKTKNLRLLAVTSKNLVSEAQKRHDTWSASSAVLGRTLTGGLLLAAASLVD KQELTVRLMGNGPVGACVVTAKSNFTVKGYISNPHIALPPRSDGHIDVKKAVGEGWLQVT KDQGLNEPYTGEVPIVSGEIAEDFTYYLAKSEQIPSAVGLSVFVQANNTIGAAGGFMLQA LPGASDELLSVVEQRIKELPNISSLFLEGITPEQLAEKILGDDCKILEKDKVAYACDCSK EKFSHLLATLKKADLQEMINKDHGAELTCQFCKEKYHFSDTELKAILAEQLEK >gi|297149550|gb|ACGQ02000001.1| GENE 139 117541 - 119676 1200 711 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 137 659 110 634 636 466 47 1e-130 MKNKRNRLFTNGLFYIVIFLLMLWGINWMIGGGQSASSSETVSYSQFVKDLKNGKIKDFS IQPANGVYSISGSYKKAKVQKKKTTSYDFLTGASTSAKITKFSTTMLQNDPTVKTVENLA QKHGAKITTQGESQSGSWLSAIITIVPTIFFMVMLWMMMNQSAGGSRGGGGVLNFGKSRV KPEDPTKNRVRFSDVAGEEEEKQELVEVVEFLKDPSRYLKLGARIPSGVLLEGPPGTGKT LLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTSPSIIFIDEIDAIGRR RGNGIGGGNDEREQTLNQLLVEMDGFQGDEGVIVMAATNRSDVLDPALMRPGRFDRKVLV GRPDVKGREAILRVHAKNKPLASDVDLKEVARQTPGFVGADLENVLNEAALVAARRNKTE ITAADIDEAEDRVIAGPAKKDRMISQEERKRVAFHEAGHSICGLVLSDSRTVRKVTIVPR GRAGGYNIMLPKDDQFILTKKQLMEQIVGLMGGRAGEEVVIGDRSTGASNDFEQATAIAH SMVVHYGMTDELGMVQLEKEGQAEYGVKPYSEATAAKIDEAVKKILDEAHKQAIQIVEDN RDKHKLIAEALLKYETLNEKQIMALYKTGEMPEADQKEFPSESKASTYEEAKAAMEKKEH QKDSEKIDSDDSSKSKVAGENSENDITEEKTSVDANDEKTPEKPTDSENQD >gi|297149550|gb|ACGQ02000001.1| GENE 140 119760 - 120998 808 412 aa, chain - ## HITS:1 COG:BS_yacA KEGG:ns NR:ns ## COG: BS_yacA COG0037 # Protein_GI_number: 16077135 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Bacillus subtilis # 1 246 1 260 472 134 32.0 4e-31 MDKLKQFLTDYNLDFKNKTIIVACSAGPDSLALVDMLKNWPLRLIVAHFDHQIRQDSYLE TELLEQYCKQNELPLYVKKWENNQNKTEAAARKARYSFLLALAKEKQADYLLTAHHGDDY LENIILKLIRSGDPAEMSSLQAVGQMEGVKLVRPLLYYSKSELTKYLLDKHLAFITDETN LTNENLRNRIRHQLIPLLKEENPTILKNGRTFGQKMMAYQGVTQHTFSAIKLEQVADSWR IKKASLASYTDAEKALFWEWKIWRYYDERVHLEKWQSGPYRILEYQDYVYLFKGQPKFVD KSSIKLDQPFIFQGRKYVISTQVLPQANLIGSFLAQKGNLKMGSAISGSKLPLKNGHHAK SKKFFAQAAIPNILRPAILCLYQNETIVFIEDVYKNQKCANDFIKYYVFLVN >gi|297149550|gb|ACGQ02000001.1| GENE 141 121018 - 121368 271 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161506858|ref|YP_001576812.1| putative ribosomal protein [Lactobacillus helveticus DPC 4571] # 2 116 3 118 120 108 46 4e-22 MKFEVGQRIIGKINNVTDYGIFVSLKNKSGLIYKDDFKDGWEREKLKFQPGQEVRVVITQ IKNKKIALSLKRVDDPNLVDPDNQFNNLSQEAFASTLTELTVQAKKTIKDLQDGLN >gi|297149550|gb|ACGQ02000001.1| GENE 142 121365 - 121736 470 123 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0273 NR:ns ## KEGG: LGAS_0273 # Name: not_defined # Def: septum formation initiator # Organism: L.gasseri # Pathway: not_defined # 2 121 3 124 125 105 53.0 6e-22 MRGPRIYEASDKELAQLRRKRKKATEEVHRKRRVRYLTIFGLIFVVLGIQLILNITTTHR IKSEIQTNKTSLVEQKETNRRLKIKRNNLKDPDYLAKYIRYKFYYSKKGEQIYNIPEDSK DNQ >gi|297149550|gb|ACGQ02000001.1| GENE 143 121803 - 122045 374 80 aa, chain - ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 79 17 95 105 80 55.0 6e-16 MRLDKYLKVSRLVKRRTVAKEMADQGRIEVNGRVVKSSYDVKLDDIISIGYGSRTVKARV LNIRETTKKDEASELYELVD >gi|297149550|gb|ACGQ02000001.1| GENE 144 122057 - 125542 3655 1161 aa, chain - ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 45 1111 48 1123 1177 1001 47.0 0 MKLTEIVAQDKELGAFLINTNKNNKSLLTGINERNLPLILLELLKQNNTLLIIEENENKA QRLVDNLAPLLPEEKVQYFAVDSTLATQRATASPDELAQRIKALHLLLSEENGIVVTTAQ GLEYQLNSKDSYTKSNKLIKVGQEYDLKQMNSWLVASGYRKEALVAKPGEFAVRGDILDI YPLDQALPVRIEFFGDEVDTVKSFDVNTQKSISEKDQINVLPASDRIFESANLKKAHNLI KDEIKESLNPKAAEQNFAQVLDELSQGNLPDNYAFLVDYLLPKSCSLLSYLPENGLVVFN DWPAIKKTDGEIAAQNASFISDEIKAGLMLNSQKLRLNLTTVLRQSKHNRLYLSLFQKGM GQLRFDDFFNWPCREPEQFFSQMPLIKSELNKYQKQGYTVILQADNEKRSKQIQSNLIDF DLNLPIVAKDKLVEHKLQITVGQFNQGFYLPQLQLLYLTERELFNKQVHKKRKILNLENA QRLRNYNDLKPGDYVVHVNHGIGRFEGIKTLDVDGQKRDYITITYQGHDQLFVPADQLSL VQKYVGSEGHRPKVNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAARESEKGYAFSKDND LQKEFEDAFPYVETPDQLRSSNEIKADMEKSKAMDRLLVGDVGFGKTEVAIRAAFKAIQD NKQVAFLVPTTILAQQHFDNISDRFKDFPVNVALLSRFQSNTEVKDILEGLKDGKIDLVV GTHRILSKDVEFKDLGLLIIDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLHMSMV GVRDLSVMETPPVNRYPIQTYVMEQLPSVIREACLREMARDGQIFYLHNRIGDIDETVEH LQQLIPEAKIEAIHGRMSENQMSDILYRFLHKQFDILVTTTIIETGIDMPNVNTLIIEDA DHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLEAIRDFTELGSGFKIAMR DLSIRGAGNMLGQQQHGFIDSVGYDLYAQMLDDAIKARKGGHKLAKTNSEIDLGVEAYIP DTYISDQQKKIEFYKKIKVISSEDELNSIEDELLDRFGDYPVATENLLAIAKIKYLADLA GVLEIRYTKDKLKVEFNQASSKHLQGPNIFKALEHVNMKASVALTEQQHLTVLLVKGAMK RRVLFNELETFLTDAGKLVDK >gi|297149550|gb|ACGQ02000001.1| GENE 145 125545 - 126102 541 185 aa, chain - ## HITS:1 COG:lin0245 KEGG:ns NR:ns ## COG: lin0245 COG0193 # Protein_GI_number: 16799322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Listeria innocua # 1 185 1 184 184 168 43.0 5e-42 MKLIAGLGNPGKKYDKTKHNTGFMCLDNYMAKNNLSLNQNKFEGLFTKEKIAGKDVILLE PQTYMNESGRSIRQVANFFKIDPSDILIIQDDMDMPIGKIRIRANGKSGGHNGIKSIIRD LGTEKFNRLKIGIRHPENTTVVSWVLTPFNNEQQKLMDAAFSTSEDILTDFISGKDAGYL MNKYN >gi|297149550|gb|ACGQ02000001.1| GENE 146 126272 - 126958 771 228 aa, chain + ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 212 1 210 211 228 53.0 6e-60 MLIKSLVYKKDYLTTVNEKATLEEALKILEDSGYRCVPILDDSGTIFRGNIYKMHIYRHK SQGGDMSLPVTHLLKNATKTIKVDSPFFKVFFNIKDLPYIAVLDEDNKFYGILTHNRLLS MLSDAWNLKSSSFVLTVLSDNERGNLIKMSKIISKYTNLASVITLDGNLGASDYVRRTLF TLPAGVSEETLKTIVEKLEKKGYVVAEIEDLQTGTTIRKDEDPDQFTL >gi|297149550|gb|ACGQ02000001.1| GENE 147 127001 - 128128 1146 375 aa, chain - ## HITS:1 COG:L0103 KEGG:ns NR:ns ## COG: L0103 COG0787 # Protein_GI_number: 15672826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Lactococcus lactis # 1 373 1 366 367 329 47.0 4e-90 MVPAIHRPAEVEVDLLAIKKNLQAEKAHLKPGQKLFAVVKANAYGHGAVKVAKMAARNGA DGFCVAVLDEAFELRDASIVDPILVLGVTPANEACIAAAHNISLTAPSLEWLKAADMALA KKDMVLKIHLAIDSGMGRIGFSEDQEFIAANEFLRNSTHFIVEGMFTHFASADSADSSYF DYQIKRFNHLKNLLSIKPKWIHVANTASSIFDKQIHSDIVRFGIGLYGLNPSSNPASPDL ESKITLKPALSLVSELSFVKKVHSGYGIGYGSTYVADSDQWIGTVPVGYADGIIRKLSGF KIKVGDNFCPIVGRICMDQLMVLLPEKMPVGTKVVIYSNKTEDPNSIKKAADYVDTIHYE LACLLSDRLPRIYHE >gi|297149550|gb|ACGQ02000001.1| GENE 148 128549 - 130003 1719 484 aa, chain - ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 438 3 440 516 569 65.0 1e-162 MKFTELGLNDALLKAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLPIL QKINNKEHFIQALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALKQTP AILVGTPGRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAQNREHTLLF SATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRLIDVQAPD LAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILVATDVAA RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEIGYMRTIENLTKK KMSPLRPPTNDQALQGQLAIAHKQIEDLLKADLTKYTEEASELLDNYSAVDLVAAFLKNL SKDADEIKVKITPEKPLPYKGNGRRRGHRNNFKHGGDRNERRHRKSNVRRGKHDFVIKNK KDHK >gi|297149550|gb|ACGQ02000001.1| GENE 149 130014 - 131381 1592 455 aa, chain - ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 453 463 348 41.0 1e-95 MKMQLAEIAKALDTTIEGNSDPVISSVAFDSRKINENALFVPLKGERDGHDFINSAIANG AVATLWEKGHPNKPDNFPVVEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMV AAVLSKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKPDV CVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLLRQRAEKISQAKSTF GFNDQDTIYALEFKSYMHHASFVTSSSEQKFSIPMIGKHNVSNAMAAICVGHHFGETDDE IAASLSNFTPTANRMQWRKGDVGEDIMDDIYNSNPTAAKAVLTSFGQVEVPEGGRRIAVL GDMLELGSASAALHASLAEKLDPLVINEVYLYGPEMKNLEEAIKDKYAPASLHYYPQDKM ERMIDDLKNDIHSNDIVMLKASHGMHLDKVLERLL >gi|297149550|gb|ACGQ02000001.1| GENE 150 131479 - 131736 442 85 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525693|ref|ZP_03955742.1| 50S ribosomal protein L31 type B [Lactobacillus jensenii JV-V16] # 1 85 1 85 85 174 100 5e-42 MKQGIHPDYQQVVFMDSATGAKFLAGSTLNPSETIEFEGKTYPLVRVEISSDSHPFYTGK QKFAQADGRIEKFNKKYGLSSKENK >gi|297149550|gb|ACGQ02000001.1| GENE 151 131863 - 133764 2585 633 aa, chain - ## HITS:1 COG:no KEGG:LVIS_0239 NR:ns ## KEGG: LVIS_0239 # Name: not_defined # Def: periplasmic protease # Organism: L.brevis # Pathway: not_defined # 385 632 97 343 344 298 60.0 4e-79 MATCAAVLASFALFTQSEKVMAATNNVAETGVLTVKYNGLGGVTLLDSDGNYQAQVLGKN TTWRYFEKATINGRTMYRLGSDKQWIPAEFTSLNGQSSSQSTTTSTQVESKPQAPQTSQT VSAPSDEKSVSGVLHVVYKGLGGVALLDSQGNYQKQYLTNGTGWRYFAKATINGRTMYRL GSQKQWIPAEFTDVKDVEVTKTESNSSSKASDAKPSEASSSQKTDSKQTESSSKETTTSA LTEFTSANGILDVNYSGLGGVALLDSQGNYQSQHVANGTGWRYNAKGKINGRLMYRIGSD KQWIPAEFVTIDKDADLPNYSRTTGILYVNYQGLGGVNLLDSQGNYQNQYVTNGSSWRYF AKATINGREMYKLGGDKQWIPAEFTAGFQNKSGYYQVQYNQIQPSIYAPGYNLGYNYEGV KTWLVMRRLGTYAGYANYNWATVNAVKNFQASHGLNPTGIVDLATWLKLGFIKETWYGID SYVAPLGAGKNASREDHINAMINQAYKYLGKPYIVGASSSPDYGVDCSGLVLQALYAGGL NPTSISSTQHAHPGNEWNSRVLWADPKLMTVPLSDIQRGDLVFYYEPGTRTIWHVALYIG NGQVIESWPPRVGISTLRDYNRSIIAGVKRPFI >gi|297149550|gb|ACGQ02000001.1| GENE 152 133896 - 134411 398 171 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852002|ref|ZP_05557389.1| ## NR: gi|256852002|ref|ZP_05557389.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 171 1 171 171 309 100.0 5e-83 MDNGIIKMNKVSYPEFSELMTYYRTLSGSKFINNQRKVLLKSLQLAKKGDYQHALADLRT EAERLTKYWLKQKKIKPDLNFNQNINLLRHSGVSRENINTLYEIKAAGNKAVHELNANEE VAKKCFYDYFKVLKTYQRQIKPQQNFFIEKIFLILLIVIFGLFLLKLGQPN >gi|297149550|gb|ACGQ02000001.1| GENE 153 134383 - 134832 502 149 aa, chain - ## HITS:1 COG:SP0740 KEGG:ns NR:ns ## COG: SP0740 COG0494 # Protein_GI_number: 15900635 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 146 1 148 151 144 50.0 8e-35 MDRSERVILTNMCMVYDGSKILVENRVKKDWPGITFPGGHVERGESIIASTIREIKEETG LDIQNLEMCGIKQFFDDDIRTIVFLYKTNQFSGVLRSSREGKVFWIERQDLKKYQLADGF ASMLEIFENDKLSENHWYLENGQWNYKNE >gi|297149550|gb|ACGQ02000001.1| GENE 154 134906 - 136141 1458 411 aa, chain - ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 408 1 394 399 191 30.0 2e-48 MKKIWLVTKETFIRQTKGITFILSVLAPVIFMGIIFAVIFATQKLSGSDNKIDNAIVISK NYAPAVKDLSNFEVKSESAAKKALADEDIKGYVKVNVSSSGQITASWLGKEAMDSNDKSS LMESLQKLQQNLNVQAAGLTTKQLKTLSQSVKISEKISGHNGSEKKATRADLTAKSAKSI AANVFIWITYFILLTYISTMAQEIATEKGSKIMEIIFSSMRGGDYFVGKVLGVLGVFLVH VLAYVALLGLAIIVGPKIEMFAGFFKSNHELISQVVSNLISWNLVLLLLSVILSIVLAAF CGALANRVEDLQKILAPIIYIVIIALIAAPSLSKGDSIFAQVVSCLPLLSGFILPGRVAE RVAGTPELVIATIVSILTLALAIYFVRKAYPKLILQTDDGNILKKIKRLKG >gi|297149550|gb|ACGQ02000001.1| GENE 155 136138 - 137043 255 301 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 7 295 9 301 309 102 26 3e-20 MVQQTHLVIDNVKKSYRTKEVLKGISFDCKPGQITGLIGKNGSGKTTLFHSILHFLNYEG KITLNGKNFSNEDYNIVGYLPEERSLMPKLTVLEQVRYLASLKGMSNNDIKVALPKWMDK LQVVGKMSDKIKSLSKGNQQKVQMIATMIHQPQILILDEPFSGLDPVNVDLMKEIILEQA KRGATVIFSDHNMDNVERLCDKVVMLNQGQLVLNGTIQEIRDSYPKEYLYIKKAGLNKEQ VASLPGCESYMQRHDGIWSIKLVDEKYGSEIFKLLTQGEYIPTFSQEAPTLDQIFKMEAT K >gi|297149550|gb|ACGQ02000001.1| GENE 156 137239 - 137367 73 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRDAKKIPNKKPSITAEDACDVRINGKGKSISELISDSKKKK >gi|297149550|gb|ACGQ02000001.1| GENE 157 137503 - 138612 1029 369 aa, chain + ## HITS:1 COG:no KEGG:LAF_1481 NR:ns ## KEGG: LAF_1481 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 5 369 4 367 367 418 56.0 1e-115 MKKGIKYTFRVILAILGIIFITLIGYAIYMQANYYRIPDHQIIHIKNNQSSVLSTGKTYT VTTYNVGFGAYNPKYSFFMDTGEMKNGTKTRGKYGTAVSKASELADTKGAIATIKKQNPD FAFFQEIDTNSTRSFGVNQVKMAESTFNNMGSSFAQNFHSAYIALPLNNPHGFARSGILA LSKYHITSSERRQYFVSSNLIEKFVDLDRCFNVMRLPVKNGKELVLINSHMSAYDKGGLS KKKQLALLNQVMKAEIKKGNYVICGGDFNHAFGAKYVAHFKSQQKQHDWLAVLSQKDLAS SGMKMVTAKNADEVPTCRGSDIPYKKGVTYTTIVDGFLVSPNVKAVSYNIDTQFAYSDHN PVKLSFSLK >gi|297149550|gb|ACGQ02000001.1| GENE 158 138748 - 141060 3013 770 aa, chain - ## HITS:1 COG:no KEGG:LJ0913 NR:ns ## KEGG: LJ0913 # Name: not_defined # Def: levansucrase precursor # Organism: L.johnsonii # Pathway: Starch and sucrose metabolism [PATH:ljo00500]; Metabolic pathways [PATH:ljo01100]; Two-component system [PATH:ljo02020] # 17 675 25 700 797 672 57.0 0 MVKKMKKAALGLATFAATTVLSVSMNNSVVKAADKANDNNDKNTTSNTTVDNTAAVQDNV EKAQSAVANAETAEEAASAQKVLAQSKIALTTMAALDKSAAASTSSVTSSTQTSDKDSDT AKTNSDSTKSASGDTNNGEFAPATREITAGDKSTYDADGLKPEAAAAVKAAGIDPKTLSD YQKEALNKVDYTRKNAAGNAQMTYSDFKKIADALISKDGRYAIPYFNAKEIQNMPAAYTI DAQTGKLEHLDVWDSWPVQDVKTGYVANWNGYQLVVAMMGVPEANDNHIYLLYNKYGDNN LANWKNAGPIFGYNASPLLQQWSGSAVVNTDGSIQLFYTQVDGSQGTNHQKLASVTLLLS DNNGEVKIEKLANDHVVFEGDGYHYQTYKQWIETNKGADNIAMRDAHVIEGEDGHRYLVF EASTGTEGYQGLDQIYNWSNYGGDDAFNIKSLLDVLENRDIKSRASWANAAIGILRLTDD ETNPQVAEVYSPLLTATMVSDEIERPDVVKLNGKYYLFAATRLNRGSNDHAWMAANDAVG DNVAMVGYVSDSLNGKYVPLNESGVVLTASVPANWRTATYSYYAVPVEGHSNWLLITSYI TNRSHVAGDEYESTWAPSFILQVNDDNTTTILAKMTNQGDWIWDDGSENPAMMGTEETAA LPGERDKVVNWDEIGYKSNYDVPSVPEYPEIPSTPKSKYGMPGDPLFQDDTPETPKTPET PRRVDRYNNPTPTKSSLLPQTGNVVTNILSALGMLLASAGMALGFKRKND >gi|297149550|gb|ACGQ02000001.1| GENE 159 141828 - 143588 1046 586 aa, chain + ## HITS:1 COG:no KEGG:LCABL_28670 NR:ns ## KEGG: LCABL_28670 # Name: ykcF # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 566 72 648 651 464 44.0 1e-129 MIIIQLAVLKFLPVSIYHDPYRVLSQADQLAAGNFHWTTTYFWRYPNNVPITYFLYLWLN LTKTLFSTNLALWILSFLILNSFILLTLKLAWQLSKRKSLIIGLTAFFVLTPFSYTYYLQ VFYTDLPNFLLLLLIFDYLFKWDSFNKSQQVITSISIFLLACIAYLLKPNIIILIPAILI LWLLLLIKKQLKKQLLIPSTIIILGLTLGLTATNGIYQLSNFKENKSFEFPKTSWIAMGL NEKYRGTYASEDVTKEVKLKNEAQRQTYDKALIAARIKKLGFSGLIKLWIQKLAILLNVG DIQNWYNGGYRNAPGWYQKHAQFFAKVSIITYSASCISIFAAVIARLFRYKLNLKKYKDQ ILLLSILTILGYLAFHTLLWESEPRYGQVILPMLFILLTLPIKKKHHQSKQVGIIALCLA IITPIFFSYYYAKTNKNDQIIAAQRSQLSVQYHAKSSTIQSLLKQRVRLNAEANYFSVQI HKQTELKVYLKNLSTNSYYALKHKDDIFYLNRKIKAGNYEIIAVNPAPTKQAVNIIKTYN YYLAPYPLYIDGKKDFHSSFIYTFVYDYKNGNYDWLKLNKEKRFGK >gi|297149550|gb|ACGQ02000001.1| GENE 160 143627 - 144583 1401 318 aa, chain + ## HITS:1 COG:Cgl1931 KEGG:ns NR:ns ## COG: Cgl1931 COG1957 # Protein_GI_number: 19553181 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Corynebacterium glutamicum # 2 296 3 299 316 278 51.0 7e-75 MKKVILSLDTGIDDAMALAYTIAKDELDLIGVVGTYGNVYTEQGAKNALALLEMLGKTDI PVYLGNDHAIDQDHFDRMEVSADIHGENGIGQVIIPAATRQVETTSGIDFIIESTQKYGK DLLVIVTGPMTDLALVLQKYPAFKDEIGQVVIMGGALTVRGNVSPYAEANINQDPLAAKI LFESGTPVIMIGLDVTMKTPIGLTDTQKWRDTQTFVGEKYADIVDYYIHIYDKYSPYLHG GSLHDPAAVCAAIHPEWFTFLPMHLTCETEGPSRGRTIGRLEDLRKEKPNVKVAIDIEAD KVSHDICSSLENWFKESK >gi|297149550|gb|ACGQ02000001.1| GENE 161 144690 - 147224 2887 844 aa, chain - ## HITS:1 COG:no KEGG:GALLO_0271 NR:ns ## KEGG: GALLO_0271 # Name: not_defined # Def: putative transposon related peptidoglycan linked protein (LPXTG motif) # Organism: S.gallolyticus # Pathway: not_defined # 32 766 23 733 855 82 20.0 9e-14 MGGKAMNNKFKDTVVGTAALLATTTIALTTNSHQVKADNKENTKQINNNSTSSLESTEQR VTKAESNVNDAQLEANSASRNKVLAEQKKDQAFDTLKKAKENQTKAENLVKEAQNKVSNK EIGEKQAQKAVDEDKVAIDQAQSQVDEAKKTADLALDSLNEAQSKVTNQEQKVKDAQVKV DNTQKIVDNTNVGKIQTDLDQANKNLTQAQSSLDEENNKLIKTRVAIDNSNEQLKQGKAE LTQKQAQLDQANEQLKNSQEMANKANEDLTANENSLNQLKQKIATLKSTEENQDKLIYGT DFINLVKKYKEENRDNWGFWSSYPDLAEVAKKYYEANFQGYKPTKADENTYYTINNGLID KEAIKQMSLYAASLLNPLRISLGEKPILVSDASIEVELATIKAYNDANQGFGHLENIIQD KIPKEFGFWTEGESIAMTTNSSDLKGTRVSLADLKMGIRQAIAMWVFDDNDQGYGHMTDV LSLRIYKSEDAAISIDKFGIFHFNDIVEPSEDGEFAQLKKTGQTYNEPTDVASELANLEA EEVTKQTSYEAAKANAEQLNNKLNADQQVVNKAQQAVNDKANTIKNIQSSLAQYIEQENN IKNTIEKLQSNIKSKEEIITNLENQLAEASADNKQKLADLQTAKSNLDEVNNELISLNTD LKQKQTNNDIAKKTLEEKTSILNEAKQKLELDTADLLSYQQAPENLKKAQDNLAQVQDEL EKANKVYEESINLLTISANNDELAQNKLAEAKKELASAKAALSALKALLEPQKIENNSAE FINKQQMPEQVISKIKNRTMMPEKTRVESNKTLPQTGNDSWILTSLGVLLSLWGVMVNFK KRKI >gi|297149550|gb|ACGQ02000001.1| GENE 162 147358 - 147768 442 136 aa, chain - ## HITS:1 COG:no KEGG:LJ1575 NR:ns ## KEGG: LJ1575 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 4 130 10 138 145 101 44.0 1e-20 MLGIINKIQLSIGDLSDGIGVSQRQLRYWEEKGYIKPIADNEKGVRRYSFFMVGRCAQIK EFLDEGYTLTKAYEKTIEDEQKKKVFRDFIFNQGGNFTINVTDKEHSYGEIDLGAKCEGK ELFGVVDKNGVRYELR >gi|297149550|gb|ACGQ02000001.1| GENE 163 147959 - 149434 2019 491 aa, chain + ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 5 474 11 480 493 444 54.0 1e-124 MISTDINGNKYNRTLLMTVLITGSFVTILTATLLATAYPSMMKSFNIDASTVQWLTTGFT LVNGIMIPVSAYLINKLSTKLMYISALIVYLIGTILAYWSPNFQVLLAGRLIQAVGAGVS MPMMQSIILMIYPPEKRGAAMGTMGLAIGMAPAIGPTLSGYIVDHFTWRDLFGMIIPIIS IVIIAAFFLMKDVLPNTNPKLDFWSVITSIAGFGIMLYGFAEVGSKGWGDTSVIASLIIG AVIVAIFAIRQFKLDEPFLNLNVFKTGQYTLGTLISSLSYMGMLAAEMILPLYIQNVLGK TALQSGLILLPGAIAMGVMSPITGRLFDKYGAKQIVITGTILLIFGSSAFLFIGPNTPTI YITVFYAVRMFGIAMMMMTVTTAGMNALPLDLMTHGTAVNNTVRQVAGSIGTAILTSVLT NVASSNTPAKSLLSQNPLAYKDQAINAVVLGYKSAFIVAIIFAILILFAAVFLQKGNSAR SEEITDGKEAK >gi|297149550|gb|ACGQ02000001.1| GENE 164 149434 - 149979 745 181 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0724 NR:ns ## KEGG: LGAS_0724 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 13 179 13 180 186 96 35.0 3e-19 MAILFLIIGLVIYFIFNVIPITKFHYLIAYLGLALALVSGIGIMANENVHFGMSEKTTTK VQTIKPTTSVGQVNLLVYKQVGSQGPKIYVYNSQKQHTQANIKTSSSVKTGYQAAKLVTK ETRYEFKNKFYKLLFGFLGKENELKKRTNIFEIPSSWKVLSTKEVANLKKQMIAQAQAQN K >gi|297149550|gb|ACGQ02000001.1| GENE 165 150026 - 150487 452 153 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851988|ref|ZP_05557375.1| ## NR: gi|256851988|ref|ZP_05557375.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 153 1 153 153 267 100.0 2e-70 MKKDIETLLNKLKINYRLIEHVPVWKMEDALDLALDCELLKSLVFKDEKNQTFFLLVCKA EERVNISALAKLVRTSRSKLNFASKEDLIALKTKAGLVSPLDFSNKYSIIISEEVKSLGN VGIHAGSNIETLILDVEDLVKCLVKQQRNLIWM >gi|297149550|gb|ACGQ02000001.1| GENE 166 150811 - 151419 462 202 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 12 200 7 194 194 154 42.0 7e-38 MIKLNKTSLASLVAIVLAIALANTAVLDQAKTKEVNSSSLKVTKHKEKKTKEIKIDWQKP SENKPYPNVTDYPKMWIKVSKAKQRTYLMNGSKVLYTMYCSTGSGGDRATPEGTFYIQAE RGDFFYNQGSGEGAKYWVSWKDHGIYLFHTVPTDSQGHYVESEAEKLGKKANSHGCIRLS VSDAKWFYENIKEGTKVVITNS >gi|297149550|gb|ACGQ02000001.1| GENE 167 151486 - 152235 624 249 aa, chain - ## HITS:1 COG:L51063 KEGG:ns NR:ns ## COG: L51063 COG1085 # Protein_GI_number: 15672818 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Lactococcus lactis # 3 247 8 255 261 254 48.0 1e-67 MTPLVFNTQIAKGKPSNSDCCPFCDIENLTGIIEKQNQFIWLENKYQTLQDTYLTLIIES NEHLGDIASYSYEYNRSLIRYAVDKWLKLSASKQYRSVAMFKNLGPLSGGSLSHPHLQIV GFKKADIYSEVYPENFIGLSIKKDQNFEVNMSLQPIMGYTEFNVIISNMDKLDLFADNIK DLVSFCMSEAFYRGRCKSYNLFFYYIDEKIICKLVPRFVTPPYYVGYRQSQRNSEANLER IKADFLNYS >gi|297149550|gb|ACGQ02000001.1| GENE 168 152346 - 153896 2032 516 aa, chain - ## HITS:1 COG:lin1081_2 KEGG:ns NR:ns ## COG: lin1081_2 COG0519 # Protein_GI_number: 16800150 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Listeria innocua # 202 516 1 315 315 495 74.0 1e-140 MSVKNLTDFDKIIVLDFGSQYNQLITRRLRDFGIYSELLPNDLSIEKIKEMNPKGIIFSG GPNSVYDEGSLKVDPAIFELGIPILGICYGMQLMAHDLGGKVEKADHSEYGRADINVADA TKLFDKLPAKQTVWMSHGDLVTSVPDGFETLASSPNCPISAMANVAKKFYGIQFHAEVRN SEYGLDILKNFAFGVCGARNNWTMDDFIDLEVERIRKQVGDGKVILGLSGGVDSSVTATL LHKAIGNQLTAIFVDHGLLRKDEAKQVMEALNRDLGVNIIKVDAQKRFLDKLKGVTEPEQ KRKIIGKEFIEVFNEEAKKLDGVKFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPKDLG FELVEPLRKLFKDEVRELGEKLGIPHELVWRQPFPGPGLGIRVIGEITEEKLEIVRETDA ILREEIKNAGLEEEVWQYFTVLPGIRSVGVMGDGRTYDYTIGIRAVSSIDGMTADFSKLP WDVLQKVSTRMVDEVDHVNRVVYDITSKPPATIEWE >gi|297149550|gb|ACGQ02000001.1| GENE 169 154191 - 154811 540 206 aa, chain + ## HITS:1 COG:lin1998 KEGG:ns NR:ns ## COG: lin1998 COG0503 # Protein_GI_number: 16801064 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 15 206 1 192 192 194 51.0 8e-50 MVEEAFFMQQRGVLVKLLEERIKKDGQVLEGDVLKINSFLNHQVDPKLMMEIGQEFARLF KDSDITKVLTCEASGIAPSIMATYTLNVPMVFARKKKPSTLNDAVYLADVFSYTKKVNNK ICVEKKFLSSTDKVLILDDFVAHGEAVKGMVSIVQQAGAKIVGVGAVVAKDFQGGSDWIK KQGLRFEALANIASFEGGEVHFVGEE >gi|297149550|gb|ACGQ02000001.1| GENE 170 154814 - 156097 408 427 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 8 417 15 417 447 161 28 5e-38 MKEVSHKKAAVLGLQHLLAMYSGAVAVPLLIGTALKFNSTQMTYLVSIDIFMCGLATLLQ LFRNRYLGIGLPVVLGCAIQAVAPLQMIGQKFTINTMYGAIIVAGIFVFCIAGWFSKIKK LFPPVVTGSLITVIGLTLIPVAFQNMGGGTATAKDFGDSKHLITAFATILVIILVELLAK GFLKSIAVLIGLIVGTVLASFMGMVSLTPVLQASWFHLPQFFYFGKPEFEWSSCVTMIII ALVSMVESTGVFFATSDLLKKEVNEDDLKRGYRAEGLAQIFGGIFNTFPYTTFSQNVGLL QLSGIKTRRPIFWAAGLLMGLGLLPKIGAIVTIIPTSVLGGAMLVMFTMIAVQGIKMLLK VDLGDNRNILVIALSIGLGVGVTSYPGIFQHLPQTVQLFLGNGIVVASLSATLLNLIFKG KDGLNSK >gi|297149550|gb|ACGQ02000001.1| GENE 171 156204 - 157628 1708 474 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 474 6 474 474 551 57.0 1e-156 MKEQTECTTILVGKKASIDGSTMIARSEDGGRTIIPESFKVVNPEQQPKHYQSVISKQVI DDEDLALTPLRYTSAPDASGKNGIWAAAGINAENIAMTATETITTNSRIQGIDPLLTTEE GGLGEEDFVTLTLPYIHSARDGVKRVGYLLEKYGTYEMNGMAFSDKDEIWYLETIGGHHW AARRIPDDAYVIAPNRLNIDEFKFDNPDFVCSSDLKDLIESYNLNPDFEGYNLRHIFGSS TIKDAHYNNPRAWYIHNFFNPEFGGKPSDQDQPFICHANRKISLEDIKWAESSHYQDTPY DAYGDQGTTEQKKTFRPIGINRNFETHVLQIRNNVPAEIAGVQWLAFGPNTFNTFVPFYT NITTTPASWQTTAKFDLTKIFWLNKLAAQLGDTNYRVYGELEADFEQKSLAACHKIQHDT DLAVKGLTGKDLQTKLEAANDKMAEVVYNNTVELLGQMVDEGHGLMTLKYDLLD >gi|297149550|gb|ACGQ02000001.1| GENE 172 157695 - 158960 1545 421 aa, chain - ## HITS:1 COG:SP1081 KEGG:ns NR:ns ## COG: SP1081 COG0766 # Protein_GI_number: 15900950 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Streptococcus pneumoniae TIGR4 # 1 418 1 416 419 416 55.0 1e-116 MKQMIIHGGKPLTGEVWIGGAKNSTVALIPAAILSHTPVTLECVPRIADVDNLMDLLKEM DVKCDFKETTLFIDPTEIKMSPLPAGKIKSLRASYYFMGALLGRFGKAVVGFPGGDDIGP RPIDQHIKGFEALGAIVKNENDQIIIKAPEEGLHGNQINLAMPSVGATMNIIMASVTAQG QTVINNAAKEPEIIDLATFLNNMGAVIRGAGTETIRIDGVRRIEAKIPHTIIPDRIEAGT YISLAACIGNGIRIHNIIEEHLDSYLAKVEEMGVVIDADEDSLYVYPAGDLKMIQVRTDP YPGFATDLQQPITPLLLTAKTGEGVVIDNIYPKRTRHIPELQKMGANIKVEDNIILVHPT NELHGTRVHADEIRAGASLMIAGLMADGETVIDNADNILRGYDRVEEKLRKLGADVTIQD A >gi|297149550|gb|ACGQ02000001.1| GENE 173 159081 - 160700 2007 539 aa, chain - ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 531 3 530 535 771 69.0 0 MTKYVFVTGGVVSSLGKGIVASSLGRLLKNRGLKVTMQKFDPYINIDPGTMNPYQHGEVF VTDDGTEADLDLGHYERFVDVRTSKYSNVTTGKIYSEVLKKERRGDYQGATVQVIPHITN MIKEKIMRAGQTTDSDVVISEIGGTVGDIESTPFMEAIRQMKREVGADNVMYIHVTLVPY LHAAHEMKTKPTQHSVATLRSIGIQPNMLVLRAEKEVGQELKNKIANFTDVPVEAIMESI DAPSLFDIPLNFQKQGMDQLVCDHFKLTSPKSEADMEEWVKLEKRSTSLKYKTKITLVGK YVELEDAYISVTEALKHAGYLYNSEIEINKVQAEDITEDNIADFMKDSDGLIVPGGFGLR GLEGMITAIKYARENDIPFLGICLGMQMATVEFARDVLGYKDANTTEADPETKNNIIDLM ADQEGQDTIGGTLRLGLYPARLKKGTKTYKAYDEQEVIQERHRHRYEFNNKYREEFEKHG MIFSGVSPDNHLVEIVEIPDKKFFIAAQYHPEFLSRPHKPEGLFKAFIGAASGLEEDKF >gi|297149550|gb|ACGQ02000001.1| GENE 174 160843 - 161391 794 182 aa, chain - ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 137 191 98 51.0 6e-21 MGLADFEGKKREELSLIEVARAILEDHGKRMAFADIVNAVQEYLGTSDEEIRERLPQFYT DMNTDGEFISMGDNVWALRSWFPYESVDEEVNHPEDEDDEPRKKHHRKVNAFIASSDDDD IIDYDSDDPEDDDLDTEDDDNADDFDATDDDDFDDADDDDELPDGIEGQLSELDDEDDED DE >gi|297149550|gb|ACGQ02000001.1| GENE 175 161439 - 161846 302 135 aa, chain - ## HITS:1 COG:no KEGG:lhv_0245 NR:ns ## KEGG: lhv_0245 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 135 1 133 133 124 50.0 1e-27 MKEVDLKFKSTITQEQDSESFQKIAKAQVEELKDGWRLKYLEDNQIPVKILLKKQKQTLI INRGVVPSNYSLIKLELGEKRGCKYVVNNRQMDLISETKFLKVTKYGGRTKVQVEYDLFS GLYLIGNYAVTLIFS >gi|297149550|gb|ACGQ02000001.1| GENE 176 161962 - 163338 1387 458 aa, chain + ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 14 440 6 426 434 473 55.0 1e-133 MFFQSKKLPHPVELRDPVHGYIHIEDKVILDLINSKEFQRLRRIKQLGPTSYVFPGANHT RFEHNLGVYELTRRICEIFSKQYPSTKPNDGLWNENENLVAECAALLHDIGHGPYSHTFE HLFGTNHEKIGTQIITDKSTEINQILSKVAPTFPEAVASVIAKTYPNPQVVKMISSQADA DRMDYLQRDAYFTGVTYGSFDIERLLRVIRPYSGGICFTNNGMHAVEDYIVSRYQMYQQV YFHRINRSLEVVLNKLLERAKYVYKNSNLLVTPSLQKFLDNNWTLKDYLNLDDGVMETNF SIWRESGDEILADLASRYLFRKPFASCSVDQETRNLVPKLKNYIKEAGFDPNYYTALTSA FDEPYDAYKPSGKNAHSQIEIMQDDGTLIELSELSPLVKALNGTIQGSENFFFPKVMLSQ NDEPQIFDPLYQEFQKYVKNGALRYQRKPTRKNNLNNQ >gi|297149550|gb|ACGQ02000001.1| GENE 177 163366 - 164331 1113 321 aa, chain - ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 6 315 9 317 317 424 68.0 1e-119 MSYKDDIKLFALNSNTPLAQKIADRIGVPLAKSSVQRFSDGEIQINIDESVRGKDVYLIQ STSAPVNDNLMELLIMIDAVKRASARAINIVLPYYGYARQDRKTRAREPITAKLVANMLE AAGATRILSLDLHAPQIQGFFDIPVDNLMGAPLLADYFLSNHLEKGAVVVSPDHGGVTRA RKLAEFLKAPIAIVDKRRPKANVAEVMNIIGDVSGKRAIIIDDMIDTAGTITLAAQALID AGATEVYASATHAVLSGPAIDRLNNSKIKNLVLTDSINQPEEKKIDKLQLVSVGPLMGDA IKLIEQHQPVSPLFNTRYREN >gi|297149550|gb|ACGQ02000001.1| GENE 178 164414 - 165751 1495 445 aa, chain - ## HITS:1 COG:BS_yxiQ KEGG:ns NR:ns ## COG: BS_yxiQ COG2851 # Protein_GI_number: 16080957 # Func_class: C Energy production and conversion # Function: H+/citrate symporter # Organism: Bacillus subtilis # 5 442 1 424 426 328 44.0 2e-89 MNTTLMAFLGLAMIVTFMALIMAKKLSAFTSLVIVPILFGVLAGYGFFDTLTYAMAGIKS VASTFAMMTFAILYFGIMLLTGLFDPMVDKVVKWVKGDPLKVLVGTAILSAFVSLDGDGT TTVMIVCTAMIPIFNRLKIKKIYLATLIILTNGVMNLIPWGGPTARVMTVMHLDANQILP PLLPGMIISIIYTIGVAYYLGKKERKRLGVQENVEHVVEHYESEDEEEGLKRPRLIWFNL ILTIALVVALVLGKADSAILFGFGVAIALAINYPKNKMQRHVISLLAPEMISVVIMVLGA GVLMGVLNGPVNAKGEYVSGMSHAIAVVLTQMIPSSLGKYFAIIIAFISAPGTYLLNNDA FYYGVLPPLAATAKAYGFSNLQIGFASLMGQAFHFLSPLVPFIYLLMDKTEITLGEYQSY IFRWCIGIFICFMAIGLILGYLPIL >gi|297149550|gb|ACGQ02000001.1| GENE 179 165767 - 167152 1650 461 aa, chain - ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 2 448 3 449 457 500 58.0 1e-141 MKKFVVVLAAGKGTRMKSKLYKVLHKVCGKTMVEHVVEAANGMKPEKIVTIVGTGAEDVK EVLAGKSDFAFQEKQLGTGHAVLTAAPILENENGATLVVTGDTPLFTTETFENLFNYHQE KENAATVLTAEAPNPFGYGRIIRDEQGNVLRIVEQKDGKPEELKVKEINTGVFCFDNKKL FAALKKVTNDNAQGEYYLTDVLEILRNSGERVGAYKMPDFSQSLGVNDRIALANASKIMQ KRINEEHMRNGVTFIDPATAYIDSDVKIGNDTIIEGNVVIKGKTTIGSECVITSGSRIVD SEIGNNVTVTSSTIQEAIMHDNTDIGPNSHLRPKAEIMSGAHIGNFVEIKKATIGENTKV GHLTYIGDATLGKDINVGCGVIFSNYDGVKKFHSTIGDHAFIGAGSTIINPITVADHSFI AADSTITKDVNRYEMAIARGRQVNKEDYWHKLPLAQDKDWQ >gi|297149550|gb|ACGQ02000001.1| GENE 180 167197 - 168024 762 275 aa, chain - ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 267 3 270 272 272 51.0 5e-73 MKRSERLVDMTKYLLARPHTLISLPFFAKRYGSAKSSISEDLSILKHTLAANEDGVLETV AGAAGGVRYIPFLGKKHSEAYLKELADRIEDTERILPGGFVYLSDVLGSPSDMQRIGEMV ATHYAYKNITAVMTIETKGIPLAEAVSRFLNVPFVTARKRGKVTEGATVSVNYLSSSSSR VAKMELPTKVLPKGSNVLIIDDFMKGGGTLTGMEGLVREFDSTVGGICVLCETTHADKMV DDYLSLVKIDEIDTEKRVIKTSLGNFLEKTDFNRF >gi|297149550|gb|ACGQ02000001.1| GENE 181 168149 - 168382 156 77 aa, chain - ## HITS:1 COG:SA0452 KEGG:ns NR:ns ## COG: SA0452 COG4466 # Protein_GI_number: 15926171 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 77 1 77 87 95 57.0 2e-20 MPTSIVSIKKSLDSHVGENLTVVAQAGRKKVTKRKGILKSTFPAVFVVDLDQNQNSFERV SYSYTDLLTKNIELKFE >gi|297149550|gb|ACGQ02000001.1| GENE 182 168452 - 169333 1034 293 aa, chain - ## HITS:1 COG:SPy0262 KEGG:ns NR:ns ## COG: SPy0262 COG0030 # Protein_GI_number: 15674442 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Streptococcus pyogenes M1 GAS # 7 292 3 286 290 194 43.0 2e-49 MANNLPICDPVRTKAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIKSDDQVLEIGPG IGSLTEQMLLRGAKVLAYEIDQDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKED IGDFFDLNKPIKVVANLPYYITTPIIFALAKSDLAFESLTLMMQKEVAERLCASSGNKEY GPLTIFVQTQMAVKMAVMVDHTNFNPQPKVDSAVVVLKPLAKKVDVGDTENFEHVVKMCF SQRRKTLNNNLKSLVKNGEERKNLLQMLDLPEKARPEELTIGQFISLAKALKA >gi|297149550|gb|ACGQ02000001.1| GENE 183 169323 - 169886 607 187 aa, chain - ## HITS:1 COG:SPy0261 KEGG:ns NR:ns ## COG: SPy0261 COG1658 # Protein_GI_number: 15674441 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Streptococcus pyogenes M1 GAS # 5 184 4 188 189 144 47.0 1e-34 MQLNKKNFDAVVVVEGKDDTARLKQFFPGIETIETNGSAVSTETLALIKKVAQKREIIVF TDPDFNGERIRKIVTCAVPTAKQAFITRKEAEPEFSGSLGVEHATKEALERALVELHEGA KTSDLTFDEYRSLGLATSLRSRKLREAVGIKLGIGYANGKQFYKRLVMFGIGFSELKQTV SEVENGK >gi|297149550|gb|ACGQ02000001.1| GENE 184 169873 - 170643 788 256 aa, chain - ## HITS:1 COG:L87336 KEGG:ns NR:ns ## COG: L87336 COG0084 # Protein_GI_number: 15672669 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Lactococcus lactis # 1 256 1 256 257 239 46.0 3e-63 MEIFDAHTHLNDTPFRGKEAVYLQRAQDLHVTKMACVGQDLEYNKRALDLANKYDNVYAI VGYCPDVAKDYCQEWEDLLIQQLKQPKVVALGEIGLDYYWDESPRDVQKTVFQRQIEIAH DLKLPVNIHTRDAFKDCYEILSNSNLEYGAVLHSYNGGPKWTKKFLELDNVTFSFSGVAS FTKAQDVHASVKLVPLDRLVVETDAPYLTPKPYRGKQNEPAYVYYVAKAISELKEVSLEQ VAEATYRNTVTAYAIK >gi|297149550|gb|ACGQ02000001.1| GENE 185 170643 - 172631 2419 662 aa, chain - ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 532 4 537 549 704 63.0 0 MADKKTFYITTPIYYPSGRLTIGNAYTTIAADSMARYKRSQGYETFFLTGTDEHGLKIEQ KAEKAGIKPQEYVDGMAKQYKELWKKLDISYDKFIRTSDPEHVKAVQAIFEKLLKQGDIY LGEYTGWYSVEDEEYFTESQLKEVFKDDNGKVIGGIAPSGHKVQLVKEPSYFFRMSKYAD RLLKYYQDHPEFILPHSREKEMVNNFIKPGLEDLSVTRTTIDWGIPVPSDPKHVVYVWID ALSNYITALGYGSDDDSLFKKFWPADVHLVGKEIVRFHTIYWPIMLMALDLPLPKQIFGH GWVLIYKDKMSKSKGNAVYPESIVDRFGLDALRYYLMRAIPFGSDGSFSPEDFVERVNFD LANDLGNLLNRTVSMINQYQAGLVSKPGSQDDLGNNLAKFADETIAEYQKQMDALHFSQA LDAIWKFVGRANKYIDETTPWVLNKEGKTEELARVMANLAESLRLIAIMISPIMTESPAQ IFEQLGLNFEEADQKALKFGEFAWNIKVTDKPAPIFPRRKKDEEVAYIKAEMAKAVSKKQ TRSEKKAKEMEAEKNYISIDDFDKVEIKVGQVLSVEAVEGSSKLLKFQMDFGDEKRQILS GMRKFYPDFEELVGKKILAVTNLKPRKMMGMESQGMLLSSEKGKKVKLAIVGEEHDLGAL LG >gi|297149550|gb|ACGQ02000001.1| GENE 186 172722 - 175406 2429 894 aa, chain - ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 10 889 20 905 910 815 47.0 0 MIKIKKKTVSNATNRKLLQEVATEELTTTFERFKSSNKGLSTSQAEQMRAKYGKNEIAKD EHNTKAHFLFEAFMTPFTVVLLILATLSLFTNYIFVPASDKDLSTVIIMITMVLISGLTS FIQNVKTNDAVQSLLKMVSVTTNICRDGKDQELATSEVVPGDIINLAAGDMVPADMKLIK SKDLFCSSSSLNGESNPVEKIAGQKPTKNQLNEYIDYPNVVYEGTTIVSGSGTGIVFATG SQTVFGKLARQISQTKIKQTSFDTGIKDISKLLITMTAVIAPLVFVINGLTKGNWLDALI FAIATAVGLTPEMLPVIVTSNLVKGSVEMSKHGTIVKKMNSIQNFGSADILCTDKTGTLT QDKVVLERHYDLNMIEKPKVLELSYLNSFYQTGMKDLIDKAVIDAAENELNTKKIKQDYE KIDEIPFDFRRRRMSVVVQNQAGEHLLVTKGAAEEMLEASSFVEVNGQRLPLTKEQEDKV LANINDMNNDGLRVILLGYKKNPAPVGEFSVEDESELTIVGFLAFLDPPKETAKEALHHL KEDGITVKILTGDNAAVTRAVGKQVGLDISKIYSGNELEGKTDAELSKMVEESDIFVKLS PELKTKIIEILKKDGHTVGYMGDGINDAPAMKAADVSISVDTAVDIAKESADIILLHKDL RILENGVRIGRKIFGNTMKYIKITLSSNFGNILSILVASSFLPFLPMLPLQLLILDLLYG TSCLAIPFDKMDAEYLSQPRTWSTKKLPKFMFYFGPTSSVFDIITFALLYFVVCPSVAGG SFTSLNMAGQAVFIAVFHTGWFIESLWTQEMVIHALRDQRLPLIKQRATAPVMLATFGAA VIGSYLPYSRIATSLKFGPMPGTFIEMVFVLLVFYILLTTLVKRLYLRKEKFLI >gi|297149550|gb|ACGQ02000001.1| GENE 187 175696 - 176232 227 178 aa, chain - ## HITS:1 COG:no KEGG:lhv_0227 NR:ns ## KEGG: lhv_0227 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 30 174 43 196 205 62 24.0 5e-09 MKIKHLILILLICFPIITAFKSDEMTIGQLVQNQNQLYKQKNIEAKIKIVNRRPVKVDSK EIYLLFEYGKKSNNVQLYIGKKWQKVITTSIKANLLTSQAELLKSTNKKQVTRGIKQLLR AIFTLIDQNQRITSQVDLSQNDLEKILKPRSLTLPVAIMFGLIFMGGAYLYQKFIFKR >gi|297149550|gb|ACGQ02000001.1| GENE 188 176222 - 176704 449 160 aa, chain - ## HITS:1 COG:SPy1823 KEGG:ns NR:ns ## COG: SPy1823 COG2131 # Protein_GI_number: 15675651 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Streptococcus pyogenes M1 GAS # 4 140 3 139 153 188 62.0 4e-48 MSRNRIPWNQYFMMQALVISQRSTCNRALVGSVLVKDKRIIGTGYNGSVTGQEHCDDVGH QMVDGHCIRTIHSEMNTLIQCAKNGVSTLDTEIYVTHFPCYNCTKALIQAGIKKVNYFFD YHDNPLAVELLKKTGVEVNQIKLDSSYAQNLVEEIAENEN >gi|297149550|gb|ACGQ02000001.1| GENE 189 176718 - 177740 1280 340 aa, chain - ## HITS:1 COG:L0358 KEGG:ns NR:ns ## COG: L0358 COG0180 # Protein_GI_number: 15672048 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Lactococcus lactis # 1 338 1 341 341 472 69.0 1e-133 MTKEVLLTGDRPTGRLHIGHYIGSLKNRVILQNEGKYNPYIMIADTQAMTDNARNPEKIR NSLIEVALDYLAVGIDPEKSTIFVQSQIPALFELTAYYLDLVTVARLERNPTVKTEIKQK NFNESIPAGFLTYPVSQAADITAFKATVIPVGDDQEPMMEQTREIVRTFNRLYNTDILKE PKGYFPPKGQGRLPGLDGNAKMSKSLGNAIYLADDAKTLTKKVMSMYTDPNHIHVEDPGQ VEGNTVFTYLDVFCSDKEKVQDLKEQYQKGGLGDVKIKRFLNEVLEAELAPIRERREKFA QDTDAVYEMLLEGSRKANEVANETLQEVRDAIGLNYFKNR >gi|297149550|gb|ACGQ02000001.1| GENE 190 177959 - 178555 501 198 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00210 NR:ns ## KEGG: LCRIS_00210 # Name: not_defined # Def: abortive infection protein # Organism: L.crispatus # Pathway: not_defined # 2 198 24 220 220 169 51.0 6e-41 MVVGAKELCANSSPLHIWDLILFAIVTIMTLLLFVYRFKREQRYFERVNKVNLLDNIKVT LFLSFFVFFLRGLISYLQVIHYLNSYTFQLTYAKHESVSMFWFLILSQGLVLPFLQVFLA EGFMFNYLFRDNVGSVAIFGIVFSGLAFSFLNFQLNAPIFLLDMIFGVVFAWAYLYSQNI VMPLYLAILNGLLMVILI >gi|297149550|gb|ACGQ02000001.1| GENE 191 178696 - 179067 324 123 aa, chain - ## HITS:1 COG:no KEGG:Ldb0294 NR:ns ## KEGG: Ldb0294 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 9 114 11 116 124 82 40.0 5e-15 MVDLVMSNDKLIYDFFKNYQDRGMKKWTGFLLSDHTAQIAKSQKSESNSLKSSLKLEEIK AILSTAILEGKIVQVQVKAVDLDGVPLPEIRGHVEAWDDNQVVINRQIINLSEINYLEIV KEL >gi|297149550|gb|ACGQ02000001.1| GENE 192 179045 - 180355 1203 436 aa, chain - ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 3 431 6 426 426 333 41.0 4e-91 MYDYRYEPHRLIFMIDNKSFYASCECLRLGLNPMTTALAVLSRQPDSDEKSSLIMAASPL AKKKYGLTNVMRARDLPPKSQRKDLILVEPHMNLYIQKSMEVLNIFRKYAAEEDIHIYSI DESMIDMTRSWHLFGTDPYLVGRGIQKEIREKLGLYTTCGIGENPLLAKLAMDIEAKKRW SMIAFWHYIDVPDTIWQIKNLEDVWGINKSTAIRLKKLGINDMNELAHCNPEKLKSEFGI IGEQLFAMSWGVDRSIISQKYHPEHKSVGNSQVLMRDYLEQREIEIVIREIAEQVAARIR KRKLLTSHISLHMGFSKFKNKKRTGINASKKIIATNDNLVLTAELRGLFRKFWKGEAVRT ISIAYSDLLPDTEQQLDLFVDSTTQMKHKNCDYIIDSLREKYGLASLVKASSLLPGATSI KRANLVGGHNGGSSYE >gi|297149550|gb|ACGQ02000001.1| GENE 193 180458 - 180919 578 153 aa, chain - ## HITS:1 COG:SMc01218 KEGG:ns NR:ns ## COG: SMc01218 COG0782 # Protein_GI_number: 15965326 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Sinorhizobium meliloti # 7 147 7 152 158 90 41.0 1e-18 MVYFQKMTPQGYKLIEEEIANLKKKRPIKIKALQEARSLGDLSENSEYTEAKKELRHLES RLRYLDKQLKYAEIITPNDDKKVDLGKKVKLRFEDDETSDTYEIVGRLEANLEAGKISFD SPLGAAIMKKEAGTCVTVEAPAGSYEVTIEDVL >gi|297149550|gb|ACGQ02000001.1| GENE 194 180919 - 181491 633 190 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260661471|ref|ZP_05862384.1| ## NR: gi|260661471|ref|ZP_05862384.1| predicted protein [Lactobacillus jensenii 115-3-CHN] # 1 190 49 238 238 207 100.0 2e-52 MYKKIITSIALLLVFAGAITGCTQKKSTQSSAKQSQVVKKHHKKAKKSKKSKKTNSTNID ETESQSSSNSTISSNANVTNNQTTSNTNSQSKTNSQGSVNNNQTNSGKVVTNSNSTESLA SAAVNDWLKRGGYPASFTDNDLVAYISSASNETQISVAEKASGHIVANYVEKANGLYYYD VVNNRLVKVN >gi|297149550|gb|ACGQ02000001.1| GENE 195 181632 - 182948 1707 438 aa, chain + ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 1 438 1 437 441 342 41.0 1e-93 MAHELTLQELEDFSREFNADHTSQVIARAAKRSGVLEASYNDAVSRRLTNVFSTELDTEN VTNQLQSGRCWLFATLNVLRHHFGKEYKAKNFTFSQAYNFFWDKVERANNFYNYVLETAN KPLDDREVKAYFDFAGHDGGQWHMAISLVEKYGVVPTYAMPETANTNNTSALAEALAQKE KKDALVLRKLVQAGDLEAAEKARKKFLSEVYRMTAIAVGEPPKKFDLEYRDDDKKYHLDK NLTPIEFYNKYFKGVNLDDYVVLTNAPDHEYNKLFALPSEDNVQGKYPIKLLNVPMEFLT SAAVAQLKDGEAVWFGNDVGKQKENKTGFLATNLYKLDELFGVDLTMSKKERLETGVGEV SHAMTLVGVDEDNGDVRQWKVENSWGEKVAKKGYYIMSQDWFEEYVYEVVVHKKYLTPEQ QKLAEGPAEKLPAWDSLA >gi|297149550|gb|ACGQ02000001.1| GENE 196 183327 - 185018 1442 563 aa, chain - ## HITS:1 COG:lin0483 KEGG:ns NR:ns ## COG: lin0483 COG4716 # Protein_GI_number: 16799558 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Listeria innocua # 8 562 54 565 566 421 42.0 1e-117 MKNKAIMIGAGLANMAGAVYLIQEGKWSGKNITFYALDNHGSNDGSTANEASEEYWNQNH PMENTHGFIARGGRMLNYRTYVDLMDLLSRIPSVTEAGMTAEEDTRDFDSKHRTFDKARL LEGGIGIVDGHKLGLNNMDRLLLSRLVMMPDSEEEKLDNVTIAEYFKDDPHIFQTNFWYM WETTFAFREQSSAQELRRYMHQMIYEFTQIEHLVGVNRTRYNQYESIMLPLIKYLQKQGC KFIMNRRITAFEFKDTPMQDEITVTALKMENTETDKEEKVEVDNQTAVFFTNGSITDSAT LGDYNTPAPENMDYGAASSLWKQACEHFYNLGNPDKFFNDRNASEWVSFTLTTKDHTLLN EITRITTQVPGNALNSFISTTPITPLGQKDVNMSIAVHHQPHFTTQKPNETVIWGYFLYP RRKGEFVDKEYIKMTGKEMLQELIGQLSKVDPGPHNIKDLEDKILASVINCIPCYMPYAS ALFNNRAKNDRPEIIPKHSTNLAFTGEFVEQPYQMIFTEESAVRSGEVAAFHFAGVPMSK LVLTPRYDKDPKTLMKATKRMFS >gi|297149550|gb|ACGQ02000001.1| GENE 197 185247 - 186509 610 420 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 3 419 6 416 418 239 36 2e-61 MAKFDILEDLKWRGAINQQTDEEGLKKYLAEHDDLALYCGTDPTGDSLHIGHLIPFMILK RFQLAGYHPVIIIGGGTGSIGDPSGRKTERVLQSDEQVHHNEVALTNQMKKLFGTENFQI VNNRDWLGKMSLLEFLRDYGKLFQINNMLAKDVVASRLENGISFTEFTYQILQGIDFYIL NRDYGVQMQIGGSDQWGNITSGIDLIHRLEGNERPAFGLTIPLMLKADGTKFGKSAGGAV WLDPEKTSPYEFYQFWINQDDRDVVKYLKYFTFLSHEEIDALAEKVKNEPWKREAQKTLA AEVTKFVHGEAGLEEAQMITDALFSGNVKELSVKQIEQALKNAPSAESSNEKKNLVDFLV DTKIESSKRQAREDIQNGAIYVNGNKVQELEFEVDPSASFDGKYVIIRKGKRKYTLVTIK >gi|297149550|gb|ACGQ02000001.1| GENE 198 186884 - 189460 1669 858 aa, chain + ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 8 843 16 841 850 176 24.0 2e-43 MKKIPKCIIPALISAFIFLLAGLITGTNPYFGGVPNSGDLATQYYSFFGYLRHVLIGNFS DFSYSFSNGLGGSMAGNWGYYLLSPLNFIILLFPANQLNIAIYTIILIKIMIASSSFYYL AKRLNNNSYPIAISLGVAYSLSSYVIGYWGNLMWLDAVALLPLVILGLTKEVLQLKFSLL YILTLAIIIVANYYTGYMICFFLIGFFIYLSFLSFSSWKNLLKQIIYFGISSLSAALLSA FASVPTFYNLLENKLNYHLPAPVIDAKRNLLSIGANLLFRGNISSLPLIYIGTISIILVF AYFFNGKVALKQRIAGLLLLLFTFSGLISTKIYLLWHGGQPPIFYPYRFAFIITFTLIYL ASISINHIQHLPQRTFWITNAFLICFIIYYVLIVKKVLGIPKSSLFATLIVLVISIIILN LYILEKINSKFIALLLIVDIFLNTWVTWSTTSKNVTSYNPYTEQTASLINKLPTSAKSQR LEKSFLLNNDRGESYTFNYRGVNVFSSNNDPHLSKLLGLLGLPSIGYYTYYSTGTQLTDA LLGIKTYIMSNKATTVKGFSNYGLRDDLVSNKNWYKDKNNIAYKMAVFPLVFAGYSKNNL NLKSNSALLNQEKILQSLTNTKTVYFSNAITPQITSNNMLIKTSNNLISMQQIKKKKSSV IFTYQAKPNSNGYIMLDPTIMSWGKYISDASKMTINGHSFRSLSVNLQPIGIHIPENGKL ILKIYWKPSILNKKIIQPNLYLLNENALFKSIQLVQSRKMAITTWKGNSISGTITLHKGQ SLLTTIPYSNGWYATANGKKVKIQKYLGCFIALNLPAGKYTIQLNHKMPGFKLGIIISIF GIFVLILLKKLSSKYLQC >gi|297149550|gb|ACGQ02000001.1| GENE 199 189570 - 192170 1645 866 aa, chain + ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 4 848 12 863 883 182 24.0 3e-45 MKKIPKFVIPVLISALLFLLAGLFTGTNPYFGGTLNSGDILDQYLSFFGYLRHILLGNLS DFSYSFSNGLGGSMAGNWGYYLLSPLNFIVLLFPATKVNLAIYTIILLKVMVASGSFYYL AKKKMGATDTWSISFGVAYSLSAYVISYFGNLMWLDAIAFLPIIVYGLLSIIDGKFSITY VIFLAITIVANYYTAFMTCLFLVGFFFYQAFITFTNWKVFIKKFVIFAISSLTAALISSF ASIPTFYNLLENKLNYSLSTSPIHPKSLLLALPGNLLFAGNKLAVPLMYIGTISTLLVIT YFFNSKFSLKERIASLVFLFFIFSGLFSTKLYLLWHGGQPPQYYPFRFAFLIAFSLAYFA TLSVSKGLPFNKKNILTWNSVFLFFIIIYYFFSRKLLGIDKQVSIITISVFIISVILINL YIRKQIKPYVLALVIILDIFANTCLAWSKISKNVTSYNPYTEDTIAFLNKIPKQAKKQRL DKSFLINNDRGESYMMNYHGINSFSSNNDSKLTTFGGLLGLPSIGYYTFYSTGTQLTDAL FGLNTYVVSNRLSDMRGFYNYGLRDDLIGNKIWYQNKTNVAYRINTFPLAFAGYQANNIK LKENNPLSNQVTVLNSLTNTNTQYFSKAISAHETSNNMTLSHNANLLTMNQISTKSPSTV TFTYHAQPNSRGYILLDRSLMMWADYTDINSAASKLTINGKSFRSLPVNLQPIGVHIPKN GKVVLKIYLRKNIKNKIIIDPKLYLLNQNNLNKTIKLVKSRAMSLTTWKGNYISGHIHLK RGQALITTFPYTSGWQATANGKPVKITKALNRFISLKLPAGNYKIIFKHTMPGLKLGTII SIIGIVLFGAEIHHFKYKNHRIKKGK >gi|297149550|gb|ACGQ02000001.1| GENE 200 192354 - 193469 627 371 aa, chain + ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 354 4 362 883 110 26.0 6e-24 MKKRTWIFAGFLAGLIFFIASWIGGTNFLMGGTIHSGDLIDQYISFFAYFQHTLLHDFSS ISFSFSNGLGGNTAGNWGYYLLSPFNLIALLFPTKFLPQALYIIILLKVMVASASFCWMS KKLHHLADPWAISLAVAYALSSYVITYIGNLMWLDAIAFLPLLVVFVTQLSKGHFSFPYI LLLAITIVANYYTAFMVCLFLVGFFIYQSYLNYSNWKNLLRNSLYFSIASLTAGALAAFS IAPTAFNLLENKLNYSLASPNISFFHVWQELPATMLFYTRSWQLPLLFVGTITLILTISF FFNRSIPIKVRLASLLFSLFTASGLLNGKLYILWHASQPPQLFPYRFVFLILLLWSFSLV INWLTTTQKLI >gi|297149550|gb|ACGQ02000001.1| GENE 201 193415 - 194920 953 501 aa, chain + ## HITS:1 COG:SPy2211 KEGG:ns NR:ns ## COG: SPy2211 COG4485 # Protein_GI_number: 15675943 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 96 500 468 858 858 80 27.0 8e-15 MVFFASYQLANHNSKADLKISTACFLFFLAFYFFRSRKLLFLNAAACFLALLIALISLAL VILYYTKKINPWIPAAFLILEMFLSATIFWNNIKQPSTNITNYTAQTQTFINQLPKTAKD QRLAKSFLLNNDRGESYTFNYRGAEVFSSNNDPKISDFYSLLGLPGTGYFYFYSTSTQLT DALFDIKTFISTTRLTDSAVGFKNYGLRDDLKINKIWYKDKYNTAYQCNTFPLAFAGYKA NNLQLAIKQPLENQTKVLNALTGSKQVYFSKPISAQITSTNLVVKKDKNQLNYQSKKATL STLTFTYKAKPNSVGYIVLDNNLMGYADYTSAASSLTINNHTFRSMPVTYQPIGVYVPKS GKVTLKIKLKKEISKGSLLNPELYLLNKQALNKTISYAQNNRLKLSKWTNNQIEGIVNIK QGQSLITTIPYTSGWKAFSDGKPVKIVKALNRFIALDLPKGKHKVTLKHTMPGLKLGIIV SFIGLIALVFEYLIIKKSLFK >gi|297149550|gb|ACGQ02000001.1| GENE 202 195001 - 195945 698 314 aa, chain + ## HITS:1 COG:lin0625_2 KEGG:ns NR:ns ## COG: lin0625_2 COG0584 # Protein_GI_number: 16799700 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Listeria innocua # 71 298 1 227 243 64 24.0 2e-10 MKNIKSKGVTIFSIILASFSVGLGYCIGYANAPKVIQTNNNNDNYIKQGVNLEKNYANYI NYFAAKHVISHRGSGSNDEIEHTFAAYDQAIASGSHYIEQDLVSSKEGTLWVSHDPSARR IFHCNQLFRDMTDSEIEELKTANNEHCHRLSEVFNHYKKDKDVNFVVEVRTKWDFNQIPT LVKTIHECKIPVSRLIIQCWTKEDAARIKKFLPKVKTLFLCGDYPAFEEATKDSNIDIVA PEEHLAYPQNIKFAHKHNKQFCTWTIDSSAQIKQAIKNGVDYYFTNYSAKAIDYEKIYRC PSFKTFLKRNHYKL >gi|297149550|gb|ACGQ02000001.1| GENE 203 196038 - 196655 349 205 aa, chain - ## HITS:1 COG:PA0581 KEGG:ns NR:ns ## COG: PA0581 COG0344 # Protein_GI_number: 15595778 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pseudomonas aeruginosa # 8 116 7 115 189 82 40.0 5e-16 MIHFSSFIIGYILGNFLFALIVGKYFLHADPTKNGSGNPGTANMGAVFGKKWGILTLIGD AVKSILALTITWLLFKSQLAMAYCGLGLMLGHCYPVTNHFKGGKGVAVIGITMLAVDFKM ALIILLIALVLTIIMKNLTIPPLFFTYCFGVVSLSLGKTNRGLIFLVIGIIMTIRFWKDI IDFVQGKGKKVDILFSIKKKIGIKI >gi|297149550|gb|ACGQ02000001.1| GENE 204 196658 - 197803 1455 381 aa, chain - ## HITS:1 COG:SPy1733 KEGG:ns NR:ns ## COG: SPy1733 COG1316 # Protein_GI_number: 15675582 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 23 374 6 373 424 187 34.0 4e-47 MQNNYPSNSRVALYESNKRKRNKKLRLIIGVMMILLLGIGSYIGYIFFRTKGAIDKTYDP KTAVATNSSTFNGKKSFAVLLMGTDTGAFNRTDKMGNTDTMIVAVVNPSKKRYTLMSIPR DTMAQMVGAKSLTAEKINAAYSIGGAKMAMNTVSKLINVPIKYYAVINMGGLRKMVNGVG GVTVTPPLSFSYGGYSFKKGKKTKLNGSQALAYARMRYDDPTGDYGRQLRQRQVIMSLIE NASSISTLANLESILNSVSENVKTNLSFNNLMAIFQNYKSSTATSKSDYLHGLSVTIDGA SYQVMSDTELQRVSDYVRSELGLEKEKISNFETYENKLNEQNGFSFSSTEDQEYTVYDYG SDTSSDTNSDSDQDNDDTGDY >gi|297149550|gb|ACGQ02000001.1| GENE 205 197956 - 198648 1140 230 aa, chain - ## HITS:1 COG:PM1506 KEGG:ns NR:ns ## COG: PM1506 COG0588 # Protein_GI_number: 15603371 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Pasteurella multocida # 3 228 2 227 227 308 65.0 4e-84 MSKLVLIRHGQSEWNLSNQFTGWVDVNLSEKGVEEAKRAGRLIKEHGLKFDQAYTSVLKR AIKTLHFALEESDQLWIPETKSWRLNERHYGALQGLNKKATAEKYGDEQVHIWRRSYDVL PPAIDDDNEYSQAHDRRYSNLDPNIVPKAENLHVCLDRVMPFWEDHIAPDLLAGKNVIIA AHGNSLRALTKYIERISDEDIMDLEMKTGEPVVYTFDDKLNVTDKVKLDD >gi|297149550|gb|ACGQ02000001.1| GENE 206 198611 - 198811 108 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFWKTYCERGIPTLPKKTTSFHEKWSFYIFLTYANKFIRCKIVSETLNYLKEIFHVKISF NPSRSK >gi|297149550|gb|ACGQ02000001.1| GENE 207 198908 - 201451 2890 847 aa, chain - ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 3 847 6 896 896 695 44.0 0 MKKKILWKDAWQAITGSLGRFVAIFMLMMVAVFTFIGLKMTGPDMRSTAVDSFKNNNLAD ITVVSNYGLNSKDKQKIENQSGVKKVEYSYLQDSTVNDSKKSLRVYSESKKISKVELTKG HMPKNSSEIVISYLLKDKYKLGKKITLDNHSSLKHKKFKVVGYVRSSEYLDKHDMGQTTV GTGQLSGFAFVKKSAFKSGTTTGIARITYKKTAKMNPYSTKYSNYINDKEKDLKKELDKN ISAKESKTKNKIAEINDSLTKLNAIVAVKPEYQSQIKQLESAKAKLEHLNKPSYTVNTRD EFPGYENYRSNAERIDVLSNIFPVFLFAISALVSLTTMTRFVEEERINIGTMKAIGYSNF DVAKKFIVYSMLSSTFGVIFGAFGGFRILPGIIFEAYAANSTMTGFRSQFSLAWLILGLV VAWACTTLAALYALKKDVKDRPAQLLLPKPPKKGSKIFLERITPLWSRLSFNHKVTFRNL FRYKTRMLMTIFGVAGCTGLLVMAFGIRDSLSGISKNQYTNIIKYDMIAVKNSNPSSKQN ADLLDELDSNSVKRYKRIHFTTLNRNLGEDKTKQTINVIVPKANTDLSKYINLKSSSTGK KLKLTNNGVVISEKLAQLTNAKVGHYIKLKDTNDKWKKFKVSGICEMYMGHYMVMNKQAY KHYFDKEYKTNGYLISTKSGKLQTVSEKLMDTGAIKGINQNVNNKKTIDNLINSLNKVIL ILIAISTILALVVIYNLTNINVDERMRELSTIKVLGFFDKEVTMYIYRETIILSILGILA GYLVGIWLHSFIITTLPPVNAMFDPNMYISNFIYSALIPAVITTVLAFIMHKKIKDVDML DALKSVE >gi|297149550|gb|ACGQ02000001.1| GENE 208 201469 - 202170 326 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 228 1 226 245 130 36 2e-28 MSIIDVKNSSKEYKTGNTTVLANKNITFSVDKGQLVIILGSSGAGKSTLLNILGGMDTNT SGDVIINGHNIANYSRKELTAYRRKDVGFVFQFYNLVPNLTAKENVELAAEIVPNAMEAS EALDAVGLGDRMNNFPAQLSGGQQQRVAIARAIAKNPAILLCDEPTGALDYQTGKHVLKI LQEMSTKKGSTVIIVTHNAAIAPIANQVIHVHDGQVKRIEKNEHPTDISEIEW >gi|297149550|gb|ACGQ02000001.1| GENE 209 202285 - 202842 440 185 aa, chain + ## HITS:1 COG:SPy1258 KEGG:ns NR:ns ## COG: SPy1258 COG1309 # Protein_GI_number: 15675217 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 5 171 4 172 180 83 31.0 2e-16 MGNIRRTNSKQKIKDAFIYLLKTEGYQKMTVSSITKKAQINRGTFYLNYLDKSDLWREIK ETILTDISACLKIEPQNPHFFSEASLKEVINYLIKHQKLLFSILNSDLYPEFIADFYKTL VKIFSKYHNQNNGPLKQPYAYEVVFSGIATIFTLWIRREMRESPEELLKIIKAYRENAPT NILSL >gi|297149550|gb|ACGQ02000001.1| GENE 210 202892 - 203353 495 153 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 135 7 135 152 115 46.0 2e-26 MAIWLQILINIVFSIIGSMGFALTINVPRRALFLTGISGACGWMTYWVLIRLHSGRMIAN LVGAFVIGMLGLFFARIKKCPVSVFNIPALVPLVPGAPAYMAVRALVQGKYDVAEDLMLR VGIITVAIALGFLLSTLQSEFIYRLKMHYKNKQ >gi|297149550|gb|ACGQ02000001.1| GENE 211 203355 - 204122 553 255 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 15 253 13 249 250 182 41.0 5e-46 MFEDKERLKEVQRICLLAGHLMIEGGSEMSRVEDTMLRIARNAGVTDPQVFATPTGVFLT LDSGQLSQIEQVRERNINLELVDRVNNLSRQFANKEIDLQELDEKLHDVATNTAAFPLWL QLVGAASLSSTLMILFFDSYDWLDFPAAAIVGCLGFLVYYFIQKYTRIRFLSELIAAMFM ALLTYLIRLLVPECSIDKILVGALMTLVPGLALTNALRDLFAGDLMSGIGRFVEAVMTAL ALGGGVGIIMRFLGA >gi|297149550|gb|ACGQ02000001.1| GENE 212 204134 - 205675 1726 513 aa, chain - ## HITS:1 COG:CAC3339 KEGG:ns NR:ns ## COG: CAC3339 COG0488 # Protein_GI_number: 15896582 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 499 1 501 518 427 44.0 1e-119 MSLLTVTGLSQGFIDKTLYEDANFVLNKEDHMGVTGQNGVGKSTLIKILTGEIVPDDGQV KWQKNIKVGYLDQYAKLTPGMTLKSFLKTAFADLFAQEEKLNNLYVEYSEKGDQTLLDKA GKIQTHLEEVGFYDIDTAIDQVASGLGLLELGYDKDVSEMSGGQRSKLILAKLLLEKPQV LVLDEPTNYLDVNHIDWLVTYLNDFEGAFIVVSHDYDFLGRITNCIIDIDFGTITRYTGD LKHAMRQKAQDRETYLKAYQNQQRKIAKTEAYIRKNKAGTRAKSARSRQKQLDRMEKLTP PQNNKRAKFDFPYVATASNLLLQTQDLVIGYDQALVKHAFNFSVGGNEKVAVTGFNGIGK TTLLKTLLGKLKPVYGSFELSATAKLAYFKQDLAWPNKNMTPLQYLAECYEKIKPKELRQ ALARMGLTAQQAMSPLGELSGGEQEKVKLAKMQFEPANILFLDEPTNHLDNETKDALRKA IVNFPGAVIIVSHERDFFRGDWVDKTIDIEKMN >gi|297149550|gb|ACGQ02000001.1| GENE 213 205733 - 206101 468 122 aa, chain - ## HITS:1 COG:no KEGG:LBA1760 NR:ns ## KEGG: LBA1760 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 5 122 6 123 124 142 60.0 4e-33 MTNRNIFPIIYAVISAVLTFIAMFFILFNTFHMNLSFTIFGAAIIAVMFYIYSYFRAHAS AEIKRIVYQYGLDDAELARLTGLKKSDFPIYQDKLQLILPKRMWPRVLHILQEYEQEQKS KG >gi|297149550|gb|ACGQ02000001.1| GENE 214 206447 - 206932 724 161 aa, chain + ## HITS:1 COG:no KEGG:LSEI_0249 NR:ns ## KEGG: LSEI_0249 # Name: not_defined # Def: cell wall-associated hydrolase # Organism: L.casei # Pathway: not_defined # 74 161 141 228 228 147 86.0 2e-34 MRAKLIKERQKAAIEELTKNAKAEQAKMDAQAKAEAEAKAQEEQKQAQQAVTQAPTPTAN TTSQANTQNISGVNKGTFKLSFYDPAALGSNMGYGGVAANLSVFPKGTRLKITLSDGTVW YRVVNDTGGFAAANPNQLDVAMPNSQVPAAGILYATVEVIG >gi|297149550|gb|ACGQ02000001.1| GENE 215 207003 - 208790 1905 595 aa, chain - ## HITS:1 COG:SA0868_1 KEGG:ns NR:ns ## COG: SA0868_1 COG0475 # Protein_GI_number: 15926598 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 380 6 396 399 248 42.0 3e-65 MLLVILMALVIPILMAKFNLRNIPTAVAEIIVGIILGVSGFNWVDTSNSQLNFLSNLGVI ILIFLSGMEIEFDLFNKKQDSQINPVKIAAISFLGIAIFSVSLGVVLSILGLFKDIFLAS IIFMTVALGVVIATLKEKEILSKTIGQSILLTAVLGEVIPLLGLTIYASIHGGDAEKLWL IILLFLAAIVLLIRFKRPYLWFNKITKQTTQIDIRLAFFLIFALVSIAEKVGAENILGAF LAGIVMKLLEPSEATKDKLTSIGYGFFIPFFFMMTGAKLNLKSLFTNQAALMLLPILVLA FFIAKLPAALTYLKFFTKGNALAGGLLTATTITIVLPTLQVARKLNAISQTQSDAFTLAA IITCIAGPIIFNSLFKLAPEDKIKEKVLIYGANVFSVAVAQELHNKWYSVEMITDDQEAY NTYKSRVESLVYCDNILATTDFNYDIVASSGSDDERNYEFAKKAKEAGTQRVIVRQKQPD ANRIAELGQLDIEVFNGYSARTSAMRALIESPAFYEILTDSDNILYDVKIQNHRYAGHQL MDLSFIDKITVSRIKRDGEWLAPHGTTVLEVGDEIVYTGKVEDADMIRELLSRKN >gi|297149550|gb|ACGQ02000001.1| GENE 216 208871 - 210691 2304 606 aa, chain - ## HITS:1 COG:lin1064_1 KEGG:ns NR:ns ## COG: lin1064_1 COG1705 # Protein_GI_number: 16800133 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 15 194 22 201 201 125 45.0 3e-28 MKTKKITGVATAALLASVAVPVTNNLANIETSYTVKAATKEQAFLNTAVPNAEVASARYG TYTSVMLAQAILESGWGVSSLATQANNLFGMKGSYNGQSYYADTAEWAAGTGYYNINAGF RKYPSWEASFEDNGYLLRTGTYGYSNRYRMAWVENAANYQVATQGLKDGGYATDPNYPRS LNNVIQYYGLNQYDPSIDNTTRVMKVTSNGTVYSGPASPNVVSATGSVTAGQVITVDKTI TYKNGMSYMHTGNGWISGSLLAGGSSQSPVNEKPGTSSNSGSPIAKITYSSPVYVWEGPN KNITSRTLSVGSSWKIFGKTTVNGETWYNLGGNQWILAKYVYATGLSSVPTVNTSASTTT TAKTNSNTQSNFVSERTVKKVNYVPGYGIMLWKNPGSEMLGRYLSHGSRWQVYGYVTVNG NKWYNLGGNQWVDGRYLVDGNATVAGESKKATTATPSNFVSERTVKKVNYVPGYGIMLWK NPGSGMLGRYLAHGSRWQVYGYVTVNGNKWYNLGGNQWADGRYLVDDATKNNITSVENMS AVGQVNYVPGYGIMVWKNPGSGMLGRYLPHGSRWRVFKKATLANGTTWYNLGGDQWVDGQ YLKLEN >gi|297149550|gb|ACGQ02000001.1| GENE 217 211130 - 211534 366 134 aa, chain + ## HITS:1 COG:no KEGG:lhv_0177 NR:ns ## KEGG: lhv_0177 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 7 134 17 144 144 138 57.0 7e-32 MTEELNKNTDEFEVVVPEANREEMPKAEFKEQPAYLVNFANFYIAKYNQNDLEIMGSFDK KGNILDINTYLLNNINFSRKELVKHVLNVHDYNFKSLLDEVVAKSNIDPESFATFEDWDK WYEAERNQIPGSLS >gi|297149550|gb|ACGQ02000001.1| GENE 218 211642 - 213684 2348 680 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 7 664 10 661 666 671 53.0 0 MKLKKRDQLTAAGLLISIGIVYGDIGTSPLYVMKSIVAGNGGMTNISRELILGAISLIFW TVTLLTTIKYVAIALKATNHGEGGIFALYALVRKRAKWLVIPALVGGAALLADGALTPAV TVTTAIEGLKGMEFGGNILVSTQGMVILITVCILLLLFAIQRMGTSLIGKAFGPIMLIWF TFLGVIGLLNMANDWSILQALNPIYAVKILFSPVNKVGIFILGSIFLATTGAEALYSDVG HVGKANIKGSWPYVFVCLILNYLGQGVWILQNPGFKTSGDFNPFYQIVPENIRIYAIILA TLAAIIASQALITGSFTLVSEASQLKFLPRMNIVYPTTEQGQIYIPSVNKMLGATTLAVV FFFQTSEHMESAYGLAITATMLMTTILLSEYLAKKGVHLVWRILFLIFFAAIEIMFLISS LVKFVHGGYVTVIIAGLIGIVMYIWYFGNKVRDKREARNSYVRLDEYTSMLTNLSHDENY PTYATNLVYMAKVKYNKFIKREVLYSILDKRPKRAKAYWFVTVNVTNEPFTAEYAVNTYG TKNVINIQLYLGFKKQTSVNVYLRQIIHDLIADGTIESQPQEYTTTPGRDVGDFSFVIVQ DVVSPQTELTTYEKWIIQARVGLQNSSSNPASWFGLDYADTVVERVPLILGRPTPSYIKR VDPINYANLKKKLKGDGNRA >gi|297149550|gb|ACGQ02000001.1| GENE 219 213719 - 215662 2454 647 aa, chain - ## HITS:1 COG:SP1647 KEGG:ns NR:ns ## COG: SP1647 COG3590 # Protein_GI_number: 15901483 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Streptococcus pneumoniae TIGR4 # 21 647 3 630 630 484 41.0 1e-136 MNNLAVRGGAGDITNPKSGVRPQDNLYLAVNSDWLKTIEIPADRSSMGSFGKIDENVEKQ LMQDFADFADGKKVIPDLPNLDKAVALYKVARNFDKRNSEGAEPIQADLKKLLNLKDFVD FKNKALELDKAGFPLPLLFGVEPDMKNTKINILKNVGPSTILPDTVTYQTEAKEQLLPIY QKQTVNLLEMAGLSSNDAEKYVEKALEYDERIAKVVKSSEEWADYPASYNPMSLADFAAK FKSYDIVRHIEGLVGMKPDRVIEADPGYLDHAEELFNATVFEEIKGWMLARFINNVASTL SADFRKAAFPFSQALYGLAELSSGEKQAYRLANSRFSEIVGIYYGQNYFGKDAKADVIDM IHKMIKVYEKRLAENSWLSKATRDKAVVKLQALELKIGYPEKSEEVYNRFKVDESVSLYE NTVVNNRLAQEYEYEQLPKPVDRTVWAMPGNLVNACYDPQRNDLTFPAAILQKPFYDLNQ TRSENYGGIGVVIAHEISHAFDNNGSQFDELGNMVNWWQDEDYAEFKKRIQAEIDLFDGI QYGPVKLNGKLIVSENIADQGGLTAAVHAAKGEGDASMQELFENFARVWAIKQKEEAIKS ITAVDVHAPGPLRANVQSQCQEEFYKAFDVKPGDGMYLEPEKRVEIW >gi|297149550|gb|ACGQ02000001.1| GENE 220 215765 - 216979 958 404 aa, chain - ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 18 376 10 365 393 199 33.0 6e-51 MKTAHGASQVKEVNIHSLLLGELITWLGSSFIWPLTSVYLNKELHVSLAMIGVVLFFNCM ANMFGSMIAGRLYDRMNPYPLVVAGLFLDAVVLFLLALFPGWPEYWLWLTLAGFFAGWDG ALINSMATSIKKIPSKKVFNLIYFAQNIGVVTGTLAVGYLYDFSVIFLFVLAAILYLLAT INAAINYRPIIAYHKELLKNKVKKEKKKVKLPKANVLMNYGLFITLGITWLMYMNWESNL SVYIVSFNIPFHMYSLLWTVNALIIVIIQAVLARFEHIFKTTFQQVVFGILMFSLSFVTL IFARDFSHFLLSMVILTFGEATAFPAIPSYVNDLTPIEVKGEYQGLTIVASSAGRAIGPL IGGLIIDRFSYIPFFIFAAIIIFLCLMILVPMHTRVKPKIKLFK >gi|297149550|gb|ACGQ02000001.1| GENE 221 217069 - 218361 1275 430 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 43 383 19 367 419 165 32.0 1e-40 MKVLKKIATLVTLVITMLTVVACSNNKKNTTSSVNIPKKISKKTTITFWNAMVGPLQNNL QELTKEFEKQNPNIKVKLEYQGSYEDIKSKVQNTLQSPNNLPTIAQSYAGYLYTAAQGGY LQDMTPYINNTNVGWGSVNKSDINKTLLEGAQINGTQYGIPFNKSVEVLYYNKTLLDKYD ISVPKTMAELKTAAKKIYEKTNHKVVGAGFDNLSAYYTDGMKEEGYNFNSKINFAGSASK NVIKYYANGIKDGYFMIAGSQKYLSGPFANEQVAMYVSASAGEAYGKKGLNGKFEYGVAN RPSKYNMARGSDIYMFKHASSMQKAAAFKYIKFLTSKSSQLKWANATGYIPVNNEAVNSA AYKNSTSIKSPAVLEQALKRLYNFPVTKNSETTFNDVSSILSGILSQAKTKNIDSLIKAG KTKFDSDWKQ >gi|297149550|gb|ACGQ02000001.1| GENE 222 218534 - 219100 420 188 aa, chain - ## HITS:1 COG:CC1859 KEGG:ns NR:ns ## COG: CC1859 COG2151 # Protein_GI_number: 16126102 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Caulobacter vibrioides # 7 105 20 118 118 104 49.0 1e-22 MEEKQLKLVDEIIQKLQTVIDPELYVDIVNLGLIYGIDLNDNNDCTVTMTLTVMGCPLSG VLDNAIKEAVLSIPEIKSCEIKLVWSPAWSVERMSDAAKTQLNVWSKDLSSYDSSNKKID FSTPVKKYIDKYDDFLDLLLELGFDHFKIPNMVETVGRVMTLKQASQAMKVSLPAVKERL ESAGYQVI >gi|297149550|gb|ACGQ02000001.1| GENE 223 219109 - 219825 858 238 aa, chain - ## HITS:1 COG:lin0306 KEGG:ns NR:ns ## COG: lin0306 COG0602 # Protein_GI_number: 16799383 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Listeria innocua # 55 234 3 182 183 265 68.0 8e-71 MPSRDQNAQEGPDIRHNYIKVNVGGDTIFVDSNQYLPNIKKDRAARKLRKHKPKDPKPKE WLASEHSLQKIADYKPFNFVDGEGVRCSLYVSGCLFDCPGCYNLVAQNFNYGRPYTQELE DQIIKDMSEDYVQGLTLLGGEPFLNTQVCLKIVNRIRKEFGHKKDIWSWSGYTWDELMQE SEDKLELLSKIDILVDGRFEEDLKDLTLQFRGSSNQRIIDVPASFKAGKVVIWKNLVH >gi|297149550|gb|ACGQ02000001.1| GENE 224 219815 - 222043 2737 742 aa, chain - ## HITS:1 COG:L70400 KEGG:ns NR:ns ## COG: L70400 COG1328 # Protein_GI_number: 15672255 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Lactococcus lactis # 27 730 17 727 747 920 60.0 0 MRGTGHMLKETPSKKMIVEAMKKPQYLVKRDSTKTNFETYKLDLVIHNLKLEDHEVEILK AIFSDLAMKDTVSAAEVAESFVDNLTKLGFVDEAKAYIEYRKKDDADWKKQIDTKARLKR MIEGDPSIVNENANKDSEIFSTQRDLTAGTVGKTVGLTMMPEHIAKAHLRGDIHWHDLDY TPLSPMTNCCLIDFKEMLTNGFKVGNAFMTSPNSIGVATSQVAQIITQVASSQYGGCSFD RADEVLAPFAQKNYDHHLEEAKEFIDDEEKAKAFAKKRTQKDIYDAMQSLEYEINTMFSS QGQTPFTTLGFGLGTNWIEKEIQKDILKIRLAGLGKDKRTAIFPKLVFTLKKGLNLNPGD PNYDVKEIALECATYRMYPDVVSYDTIKRLTGSFKAPMGCRSFLQGWKDKNGKEVNSGRM NLGVITLNLPRIAMESRGDKDLFWKIFEDKVQLVHDAMNIKAARCREAKPENAPVLYENG AFGKRLKPDEDVNQLFENGRCTVSFGYIGLYEVGTVFYGPNWEHNKEAHDFTVEIVKRMH DWCAYWEKTEKYHYHYSVYSTPSESLTDRFCVLDTEKFGKVKDITDKEYYTNSFHYDVRK HPTPFEKLEFEKDYPPYAAGGFIHYCEYPNLKQNPKALEAVWDFGYDKVGYLGTNTPIDR CFKCGFAGEFKATAKGFECPVCGNHDPETCDCVKRTCGYLGNPLKRPMVHGRHEEIAHRA KHMSLGMVRDQAQEEEKIQDAK >gi|297149550|gb|ACGQ02000001.1| GENE 225 222244 - 224193 2414 649 aa, chain - ## HITS:1 COG:L0095 KEGG:ns NR:ns ## COG: L0095 COG0367 # Protein_GI_number: 15674210 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 627 1 618 625 666 51.0 0 MCGIAAFYNPEINDKQAAIGKMMEAIKHRGPSSDGMYTNDVMALGFRRLSIIDLRGGTQP IFNEDKSKAIIFNGEIYNYKPIREDLIKAGHTFTTKADTEVLLHGYEEWGMAGLLKKVRG MFAFIIWDDEEKSMYGARDFFGIKPMYYQNKDGKLLVGSELKSFLAYPDFQKELNVEAVK PYLMNQYNDLKETFFKGVYRFPAGHYFKFKDGQMDIKQYWDAEYKENNLSFEETLDKINE DLKETVELYHNADVPVGAFLSEGVDSSFVTSLLNPDDVFSISFDDSTYDEASKAKALADI KGWHFFADKVDADEAMRDFPEMQYHMDEPDANPSIIPLWYLSKLARKHVTVALSGEGADE LFAGYVNYGMHTHNNVIKVFTSGLKKLPKGVKVSLAKGIKKMPNFPGKVHMYTNLAKPSE FYVGQSVIYDMDHPTIFSSDDANSMLQPTYRNELTTNGLYQEDFKKVKDLDNVKQMQYID LHHFMLNDILQKADKISMAHSLELRVPYLDRKIAELANSIPTKYLVNKHDTKYALRKASE RVLPEEWAKRPKLGFPTPIKQWLKEERFYKQVRKLFCEDFVNDIFEQEKIIDLLDENFKG DGSHRRQIWAIYTFLVWYKLYFINYEETVKKYQHVQPEVAALIEQGKLV >gi|297149550|gb|ACGQ02000001.1| GENE 226 224298 - 225674 1269 458 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0182 NR:ns ## KEGG: LBUL_0182 # Name: not_defined # Def: 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 25 458 32 466 466 651 72.0 0 MLGFFAKKIAQVLNNHKQENNNDTDPMQKFLKVGEYSVGAQENTPDGGDYTLTVYKDDHG ILHQALSPEESDKLAATYVRRFDSRLGRFRAFQNRKTGVRYSVTDYLDTFLDQIKPQIRS GNNSINIGVLTDTHYKATDSVDFYGNNGLIHVREFNHLEKSGLLHLKAHLGDWIDGSDAG LIGESELIKLRNSFKSTRTPFAIIKGNHDENDKFDEHHDLKASFPENEFEKIMWPIMYAQ KELKYVSRYHGVAYFDKDDLRVIFVNTSDVPYILDEQGKKKYDTKLTLAIREDQVEELIE ILSSSSGKKIILLSHGNPINRKGGNALKYNGRSLHELLVAFNQREKGRMHSHNVPPEFTL SNDFDFTNVENAKVIAYFCGHRHVEDQFRINGIQYILFNCSALMGPGHALTTKYNKNWNR QIDDITEFAGYVVNVDLVKSQIQVFGYGAASFKRVFSI >gi|297149550|gb|ACGQ02000001.1| GENE 227 225727 - 226212 675 161 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00151 NR:ns ## KEGG: LCRIS_00151 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 161 1 161 161 176 61.0 2e-43 MESLNTIKLADELTTKQDDILADTTKLNAEAIYQLIDELKVLKHPIQEYFEMSQDEYYSI ESDHQLTLLDMNNKLVDLHDRILTNHVDGYVDKDEINLTYNHENPYEDGMYDKENDFHVL AYSLKVISAVMAVAPQKLTEIISKDAVLSLGLAVYALKNNA >gi|297149550|gb|ACGQ02000001.1| GENE 228 226294 - 227106 980 270 aa, chain - ## HITS:1 COG:BH0442 KEGG:ns NR:ns ## COG: BH0442 COG3639 # Protein_GI_number: 15613005 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Bacillus halodurans # 16 270 15 267 267 218 45.0 7e-57 MDTTFKQLPAKPVSAKARFAHWALTIFTIALIIWSTTGINFSGIKATAGQITGAIFNGLI HPDWSYIYNGTGEDLVSQLWETLCIAFLGTFISAIISIPFAFWAATTKNKKWYASRSGKF VLTFIRCFPEIVLALMFIKAVGPGSAAGVLALGFHSVGMLAMLFSEAIESLEDGPNEAVI ASGGSKWNVAMFATLPNLMPALISNTLYRFDVSVRSASILGIVGAGGIGYPLTIALNYRQ WNRVGIILIGIIVMVVLIDWISGAIRKKLV >gi|297149550|gb|ACGQ02000001.1| GENE 229 227106 - 227906 868 266 aa, chain - ## HITS:1 COG:SA0136 KEGG:ns NR:ns ## COG: SA0136 COG3639 # Protein_GI_number: 15925845 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 11 264 12 265 266 203 46.0 3e-52 MAKLDQEMMELPKKKFQFWNLVWLVVFVGGLVVSTIETNTSLSAFLNNFGQFAEIFTQMA QPDWGYTSTAIPYLIETIKMAVLGTVIGSAIAFVYSLLIARNIIKNKYVTGVLRFIMNII RTLPDLLLGAIFVAVVGIGPVAGILALSVFTFGVVVKLFYEAIETIDPGPSEAVIACGGN KLNMISFAVMPQILPYFISYTLYAFELNVRASTVLGYIGAGGIGLYLKQTLDIFDYAKTG TIIIAVFIVVLIIDYVSSKAREALMK >gi|297149550|gb|ACGQ02000001.1| GENE 230 227899 - 228672 337 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 256 1 240 245 134 33 8e-30 MADKPMIQLKNVTKVYDNGTVGLNKINLDIKKGEFVVIVGLSGAGKSTLMRSINRLHDIT EGDILINGESITNARGKELRLIRRNIGMIFQSFNLVKRSSVLRNVLTGRVAYYPSWKSTF NLFSKEDKQKAYEALQRVDMADKVYSRADELSGGQQQRVAIARVLTQNPKIILADEPTAS LDPKTSRRVMHDLKMLNEEFGMTVVANLHSIELAREFGKRIIGIRAGEVVYDGAVENTPQ EVFDAIYSGKTKEEING >gi|297149550|gb|ACGQ02000001.1| GENE 231 228704 - 229633 1240 309 aa, chain - ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 306 1 313 318 327 61.0 2e-89 MKKFKKMLVAGLALALATVATACGSKSSSSSKDGYTPKSLTVQFVPSQAADKLEARAKPL EKMLSKKLGIPVKISMSTDYNTVVEAMKSKKVDVGFLPPDGYVLAHKQKAADVLLQALRY GIKQPGGVQTKDLVKFYRAEILVKKGSKIKSWKDLKGKSISVQNPTSSAGYIFPVAELKE KGLDVTKKGNAKLVTVTGHDQAVLNVLNGDTDAAFVFEDARNTVKKDNPKIMSQVVPIYF TKAIPNDTISVRSDMNKAFRKKLAKAFISIGKSKEGKKLIESIYSHEGYDYTKDSGFNIV RKYDKIAGE >gi|297149550|gb|ACGQ02000001.1| GENE 232 230006 - 230488 586 160 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 155 1 151 152 105 41.0 3e-23 MANDYKTILVPVDGSEAAERAFDKAVKIAIENGGKIDVLNVIDTRQFIGEMQDTLISGDT IYQMTQDSENYLISLKKWAKDNFDFDKVDYHIRYGSPKRIISYDFIKDNHNDLIIMGATG LNAVERMLMGSVTEYVNQHAMADILIVRTDLENKKINKKK >gi|297149550|gb|ACGQ02000001.1| GENE 233 230621 - 231421 557 266 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 10 265 46 297 298 136 34.0 5e-32 METNFSNKLINITNGRNFRELGGYETISGKKIKFHKILRSGHLADLSEDDRSYLTNYGVK YDIDFRSKEEVEKQPDRIPENVQYDFNPVFSDDLTNSSKSIDALETEAEKDPQFGFDHML LAYEDMIHSATARHAYQNFFKFLLSNTHENEAVLFHCTAGKDRTGFGAFLLLSSLGVPLE TIKKDYLLTNITTKSFVENLLIDEKKKGASDNLLQSIKDIQTVHPEYLNHAITVINKNYG SINDYLHNVIQLSNKDIIDLRRIYLQ >gi|297149550|gb|ACGQ02000001.1| GENE 234 231534 - 232010 612 158 aa, chain + ## HITS:1 COG:no KEGG:LBA0145 NR:ns ## KEGG: LBA0145 # Name: not_defined # Def: 2-deoxyribosyltransferase # Organism: L.acidophilus # Pathway: Pyrimidine metabolism [PATH:lac00240] # 1 158 2 159 159 289 87.0 2e-77 MTRTRTLYFGAGWFNEKQTKAYDAAMTALKENPTIDLEHSYVPLQNQYKGIRVDEHPEYL HDKEWASATYTNDLIGIKTSDIMLGVYLPEEEDVGLGMELGYAMSQGKYVLLVIPDEDLG KPINLMSWGVCDNAIKISELKDFDFNKPRFGFYEGAVY >gi|297149550|gb|ACGQ02000001.1| GENE 235 237862 - 238695 825 277 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01884 NR:ns ## KEGG: LCRIS_01884 # Name: not_defined # Def: D-ala, D-ala ligase # Organism: L.crispatus # Pathway: not_defined # 21 277 66 326 327 303 57.0 3e-81 MGEKITREEYQREKVYGQKYKLNFWNIWTDRPYISVAIVVSIIITLFTRWYLGTVLILLV TAIGIYIIGRSHHPNRVLSIEFHLKASRQLSILKSLQMGASVLMFLATYMRKVVSVDFTS AGTQDGLQTIQGILSNTGKYGQQGSYILSLLNTVTGGSFWGTYRYASNTSQFMNDPAGLM IILWIFLLMVAPAICVLSNFFKEPYSRRASLIGGIVSLVSFAITPKVMDFLINKYAQDQN ISVRNALSVGEMAYVAIACALIVLVIAIYRNYKKDNF >gi|297149550|gb|ACGQ02000001.1| GENE 236 238825 - 240066 1161 413 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 10 408 2 392 402 319 44.0 6e-87 MSKDISDLSKNWHRSFYTLWLGSFITGMGYSMTMPFISLFISDLGNYSKLEINLYSGLAF AMTFIAQAIVSPFWGSLADQKGRRLMCMRASGVMALTITLTGLAPNAIYIVIMRFIQGSF SGYINNATALMAGETPHEKSGWVMSQMMTAGTAGNLVGPLLGGALSSFFGNLLGGAWGYR IPFFITGFLMFMVFLSTTFFVKEHFTPVSREKMKPMQEIMASLPSIQLIVAMFITTMLVQ SATMSIDPIVSLYVKSMMPGSKSVALIAGIVAATPGLGTMVAASKIGHKMDEIGPLKVLR LGLIIGAILFAPMALTNSPWILAGLRFLLGIASAAMMPAAQTVLTLNTPSESFGRIFSYN QSFQAIGAVLGSLLGSGISGFANYEAVFWVTGFTLLLNFLIILIFANKKNTPR >gi|297149550|gb|ACGQ02000001.1| GENE 237 240063 - 241280 929 405 aa, chain - ## HITS:1 COG:PAB0724 KEGG:ns NR:ns ## COG: PAB0724 COG0477 # Protein_GI_number: 14521293 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pyrococcus abyssi # 7 397 3 394 418 77 25.0 4e-14 MVRQSQKQLLLAVSSLGIGNLASSIFSFCLSLYTLQKTGSSLVFSTILLINPAIKLLFTP LVGYTVDKYHHKKIAIGAQLISIVLDVIFLSLIELLSLNGQILLIALTVIGLSLADCFQE TSYKASTKSFVAEKYRQKLIGYEQVVIAGTAILAPILGGVVFSWLELNWVTIIELIGEVV SLLLISMIDFYLVEQRQGSHLSSIKESFKAGINYIRQDKNLLGLLLFAVFANFSLGAIEV GLPVIMVKQLKLGSELYGMTTSCLAIGMLVASLFLGKLSLNGAYLGFTGRNGVVLAVIFA IFAFIGLVRNPYLVVFTFGLGMFLIGSILTMSNFPFAMYLRTQIAEEYQGRVGSTMSSLV SLLSPISFATFGLLFNTLASLWIFSFCGVILLIDSLFLLKNKHTS >gi|297149550|gb|ACGQ02000001.1| GENE 238 241377 - 242207 496 276 aa, chain + ## HITS:1 COG:no KEGG:LBA1934 NR:ns ## KEGG: LBA1934 # Name: mutR # Def: transcriptional regulator # Organism: L.acidophilus # Pathway: not_defined # 5 276 7 279 282 120 27.0 5e-26 MNFTFKKLRKMQNITLSQVANGICSVSMLSRWENGQGKMDFEKVIELLERINLTPAEFLA LSGLNQPDDLSQDLERAWLTKDQAKLQQLTTTALAKFQTSQKLIDLNYAAICASLYYNLS RKNLLSISNQNLLNKELSHLSVWGQENLSLFRTIINVLSPRIIYQVSYQVIEHLDFIQTA GNDTFYFAITTLFEAVIALFKANNFKYAQKILDKLNTLTFKERDMQLIIGRHFLNQLAEY HNQTNEQKIIKTISFLKEIGANHLAHYFLTIFNQIK >gi|297149550|gb|ACGQ02000001.1| GENE 239 242263 - 243120 947 285 aa, chain - ## HITS:1 COG:L128697 KEGG:ns NR:ns ## COG: L128697 COG3833 # Protein_GI_number: 15673667 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Lactococcus lactis # 1 285 1 285 285 340 66.0 2e-93 MKSYTAQRRLSLIFRYALLIILSILWILPIVWIVLASFSYNDTGFVSTFWPEKFTLQNYI GIFTNPQYPFGNWIINTLIISITSAIISTFITISVAYVLSRLRFKLRKPFLQIALVLGMF PGFMAMIALYYILKGLNMLNLGGLLLVYVGGAGLGFYVAKGFFDTIPRAIDEAAEIDGAT KWQVFWNIGLPLSRPMIVYTALTAFIGPWVDFIFSGIILSTSGNAKTYTIAYGLYNMVHN SKGASTTYFAQFIAGCVIIAIPITILFIFMQKFYVNGITAGADKG >gi|297149550|gb|ACGQ02000001.1| GENE 240 243123 - 244481 1176 452 aa, chain - ## HITS:1 COG:L128696 KEGG:ns NR:ns ## COG: L128696 COG1175 # Protein_GI_number: 15673666 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Lactococcus lactis # 1 452 1 452 452 514 60.0 1e-145 MFKRKNHLPPTATFKEVWSKGDAITKCSFFIMGLNALKHGQWAKGLSLLLSEIVFFAWIG LTGFSSIKALSNLGLIKKKQVIYDASQGVYVTKQPDSSVLILLFGLLALMVVMGFIWLYI INLRSVRKNYVLKRDHQHILTNKEEIANLFDERLHATLMTIPVLGIFLFTILPTVFMISM AFTNYDRQHPIGFSWTGFKAFGNVLSGDLSGTFFPVLGWTLIWAVAATATTFFFGVLLAL LIESKGIKHKGFWRTIFVLVWAVPQFVSLLMMAQFLDYQGAFNAILMNLHLISSPLHFID NQAAPWVARITVIFVNMWIGIPVSMLVSTAIIQNLPQDQVEAAKIDGANAIQIFKSITFP QILFVMAPSLIQQFIGNINNFNVIYLLTGGAPMNNNYNGAGSTDLLVTWLYNLTFGQEQR YNASAVLGILIFILSATVSLIAYRRTNAFKEG >gi|297149550|gb|ACGQ02000001.1| GENE 241 244541 - 245752 1738 403 aa, chain - ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 1 402 1 407 410 329 48.0 7e-90 MKIWKKLALATAALAMVGTLSACSSNKSTSSTSNKNQLTLWVDTEQVPYYKTIAKDFEKS HKGIKVRVTQSPNGSANAKTDVGKDPSKAADVFEVPNDQLGQMAEAGYINPLSPSDTKNI KNNYIETAYKGVEWKNKVYAYPYAQQAQTIYYNKSKLSENDVKDWDTLTSKGVVATDFTN AYVMWPVFFSAGTKLFGDNGETLKGSTFNLQEGVNALTWFAEQKKNKNVMQTSNALNQLK KGKAAAILDGPWNAANIKKILGKNFAVAKYPTITVGGKKVQMEAFLGIEGFAINSHTANA KASAQLAAYITNKKAQLIAHDKAGQIPVLKAAINSSDVKSDSVAEAVIEMAKPGNSVLMP KMAQMATFWDGAAPLISGAYDGKIKPAQYKAQLDKLAKKIEKK >gi|297149550|gb|ACGQ02000001.1| GENE 242 245774 - 247363 1347 529 aa, chain - ## HITS:1 COG:L128693 KEGG:ns NR:ns ## COG: L128693 COG0366 # Protein_GI_number: 15673663 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 4 527 15 540 541 656 60.0 0 MTPWWKNAVVYQIYPKSFQDSNGDGIGDLRGIINRLDYLEELGIDAIWLCPIYKSPGADN GYDIADYEAIDGQFGTMVDLDELIQKARHHHIRIVMDLVVNHTSDEHQWFVESRKSRENP YRDFYVWRDKPNNLTSAFSGSAWQYDEKTKQYYLHLFAKKQPDLNWKNPKLRQKVYDMMN FWIDKGIAGFRMDVIECIGKEPDQEITANGPHLHEYLQEMNRETFGKKDFLTVGETWSAS LADAKKYIDPKRHELSMVFQFEANSLDQVGASKWNLKKPDLAELKAVLIKWQKNLAWNSL FWENHDIPRVISRFGDDGKYRVESAKMFAIMLHLLKGTPYIFNGEEIGMTNCPVESIDDV NDIESRNMYFAGLKAGKSKAELLRAINAKGRDNARTPMQWDDTANAGFTAGKPWLHVNSN YRKINVKKCLADKNSIFYTYQKLIQLRHQDRIVVDGDFKVVETSDKIFAYERVLGDEKWL VVCNLTEEKAVFSSEQKIQKNLISNYPARNSLQEITLKPFEAFACKVTC >gi|297149550|gb|ACGQ02000001.1| GENE 243 247393 - 248502 1251 369 aa, chain - ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 366 1 376 377 530 68.0 1e-150 MVEINLNHIYKKYPDAENYSVTDFDLHIKNQEFIVFVGPSGCGKSTTLRMIAGLEDISKG TLEIGGKVMNDVAPKDRNIAMVFQNYALYPHMSVYDNMAFGLKLRHYSKEEIDKKVKSAA EVLGLAHLLDRKPAALSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAKLRVSMRAEIAK LHQNLKTTTIYVTHDQTEAMTLADRIVIMCDGKIQQIGTPQEVYNHPINQFVAGFIGSPQ MNFFDVIYKDGKFSDGKGLVLEVPEGRAKQLEQAGYNGKKVIFGIRPEDIHSEGAFLETW PKSAVKAKVVVSELLGATSQLYLNVDGTEFVGIVNARDFHSPGQEVTVGFDVNKGHFFDS DTKKAIFTK >gi|297149550|gb|ACGQ02000001.1| GENE 244 248508 - 249179 907 223 aa, chain - ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 2 210 1 209 226 188 46.0 9e-48 MLKGLIFDLDGVITDSARYHLAAWRALAEELGINLPDKASDELRGLARMDSLELILRYGH QENKYSLTQKEALAAKKNAAYQQAIKQMTQADILPGISKLLEQAHTQGLKMAIASASMNA PTILKQLGLLEQFDAIVDPKTLTHGKPNPEIYQKAQALLGLKADEVISFEDAASGIAAIK AANQFAVGIGNHQVLKQADLVVIDTSELDLAKIIAIFNSKKVG >gi|297149550|gb|ACGQ02000001.1| GENE 245 249164 - 251431 2667 755 aa, chain - ## HITS:1 COG:L128690 KEGG:ns NR:ns ## COG: L128690 COG1554 # Protein_GI_number: 15673659 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Lactococcus lactis # 1 747 4 744 751 869 58.0 0 MKRIFEINPWNITTHNFPKEDMRLAESITSIGNDYMGMRGNFEEGYSGDSLSGTYLAGVW FPDKTRVGWWKNGYPEYFGKSINAPSFIGIQILVDGEKVDLAKCDFSDYYQNLDMHQGLL TRSYIYHGKSDIKFTFERFLSNKIQEAALIKLKAQVLKGSAKLAFISTLDGNVVNEDSNY EEHFWKPILEDENEKCIQLITKENPFQVPQFTVLLKQNLQVNGERVHGEVQTEAGYLAEK VTTKLNSGEEYELEKDVIVITSRDVAPDEQLERADILMHELCEHSFAENLAEHEAIWKKR WNKSDVQIKGSDEAQQGIRFNIFQLFMTYYGQDARLNIGPKGFTGEKYGGATYWDTEAYI IPMYLAITPEAVTRALLEYRHRQLPGAYHNAKEQGLKGALFPMVTFNGIECHNEWEITFE EIHRNADIPFAIYQYTEYTGDESYVQDEGMDVLVGTARFWADRVHYSKRKHKYMIHGVTG PNEYENNVNNNWFTNKMASWLLAYTLERLPKAKPEALKRLAVSEEEKAHWQDIVDNMYFP EDKKLGIFVQHDTFLDKDIRPVSTIPTGERPINQHWSWDKILRSPFIKQADVLQGIYFLN NHFTKEQKEKNFDFYEPLTVHESSLSACIHAILAAELGKQEKAVELYQRTARLDLDNYNN DTSDGLHITSMSGSWLAIVQGFAGMRYYNDELSFKPFVPRQWQGYSFKMNYRGRLLEVAV NDEVKLRLLSGPSLKVKVYDQEVLLEEGQEKCLKA >gi|297149550|gb|ACGQ02000001.1| GENE 246 251549 - 253255 1668 568 aa, chain - ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 536 1 551 584 544 50.0 1e-154 MQEASLRHRPESEDCFVIDKTHLRLRFHTAKDDVKKVIVHYLDSYYDLKTAQTKEMEKIG SGQVAEYYMTTLELPLHRCQYTFEVVGEDGSHLIYGDRGIREFNDSNLYDYGQFFKVPYF HEIDMAKTPAWVKETVWYQIFPERFNNGDKSNDPVGTKPWNPSDHPGREDYYGGDLQGVL DKLDYLQSLGINGLYFCPIFKASSNHKYDTIDYLEIDPDFGDKTLFKKLVDEAHKRGMHV MLDAVFNHLGDQSRQWQDVVQNGRNSKYFNWFHINRLPVMPFTDPTKGEQLPPYDTFAFE KHMPKLNTANEDVQKYLLNIATYWVKEFHIDAWRLDVANEVDHHFWKKFHVELMNINPEF YIVGEVWHSSQPWLNGDEFTGVMNYPYTQQIEDHFLTKKISAKMLTEVLFDQLMLYRDCV NSGMLNMLDSHDTARLLTLAGDNKDRALCALAFELVQPGSPSIYYGTEMAMTGGNDPDCR KPMDWTKEGDSYWQKVHDLIKFRRKHSTVLSRSDIKFAIKDELIVIKHGEITAYFNTSNH EVEITKKCSVSNGYQNGVLSPNGYILCE >gi|297149550|gb|ACGQ02000001.1| GENE 247 253257 - 254900 1446 547 aa, chain - ## HITS:1 COG:lin0223 KEGG:ns NR:ns ## COG: lin0223 COG0366 # Protein_GI_number: 16799300 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Listeria innocua # 2 509 4 511 553 359 38.0 7e-99 MKKWYDEAIIYQIYPKSFQDSNNDGIGDLQGIKQRIPYLKRLGINTIWLNPVFVSPQVDN GYDVANYFAIDEKMGTMADMEDLISTLHQNGIRIIMDFVLNHTSDQHPWFKDAIANPKSI YRDYYLFAGENGRRPNNWGSFFGGSVWEPDPKTGQFYFHLFDKHMPDLNWKNPGVRKAML DIAEFWLKKGIDGLRLDAFIHIAKADFRQNYPAPEGQTPVAEPFFANLPEVVHYLRPFCK QIKQDYPDCLLLGEAASANVNLAATYTDPENNLLDAAITFRCFTEDDSQLDSAIPANYQV KPFDFEAFKLTQMVWQQTLAGISKPVLYWSNHDMSRLRTRIAKNDLQAKSLAMLLYLERG LPIIYYGEELGLKNLAFQQLVDFKDQTVFDFAKKAEKQGYSEAEILTMVSRTHKMPARGV MPWKKTENYGFSKRKPWLTGKKQDEHFAEAEIADADSFFNFYRQLIALKKTPLFMEGSYY LHPTSNKSFIYQRDLGDESALVVVNLTNKPLKVMTKYQKVILSNGQYSLNDNELQLAPFA GLVLRRD >gi|297149550|gb|ACGQ02000001.1| GENE 248 255044 - 255994 960 316 aa, chain - ## HITS:1 COG:BS_yvdE KEGG:ns NR:ns ## COG: BS_yvdE COG1609 # Protein_GI_number: 16080516 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 315 1 315 316 305 48.0 1e-82 MVTLSDVAKEANVSKMTVSRAINHPEQVTPELLALVEKAMTKLDYHPNSIARALVNNRTN VIKFVTLEDIDTTEPYYMNLLFGVARGLKADSYAIQLVTDIDQIQKGNADGYIITGAREC NYPIFDELKKPFIFFGETSSSFDFVDTDNRYGTAVATKYALARGYKNAVFIGIDVKEGFE YAREYGYLASMQECNLEPQIFRTGNHSHLAEKLIDEQIERIKPNTCFICASDRLAIGVCR ALARLNKKMPEDYGVIGFDGVFLDQVANPQLTTVKQQIFKIGDMLAQLILEKIKQSGSAQ GQTYVKPELIVRGTTR >gi|297149550|gb|ACGQ02000001.1| GENE 249 255994 - 256758 867 254 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 4 251 46 297 298 92 30.0 5e-19 MRLIKLDGATNFRDLGGYVGVDNKKVRFGKIYRADSLSALSRDDIKKLNELNIVYDCDLR SYYEQEMAPDKAWKAEFIDCHLYAEGADEQDDRASSTKLTKKIKPMDNYLGQIYQKVLLS THGQKIFRAIFEKLLALKENQALVFHCSAGKDRTGMTAALILMGLGVSDDDIARDYLITN QLYHFSYQKNQPSDDEMANLVAKMNLTKADSAGIEGITETIRMGWGSFDNFFIQVLGFSQ NDLLELRNKFLEEK >gi|297149550|gb|ACGQ02000001.1| GENE 250 256771 - 258267 1683 498 aa, chain - ## HITS:1 COG:SPy1684 KEGG:ns NR:ns ## COG: SPy1684 COG0554 # Protein_GI_number: 15675545 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 3 498 4 499 508 731 71.0 0 MAESYIMAIDEGTTSTRAIIFNHAGEKVYTAQKEFPQLFPEPGWVEHDPEQIWNAVQTTV ASAFINSQIRPNQISAIGITNQRETTVIWDRETGRPVYNAIVWQSRQTTALAEELKNKGY SNLIKSKTGLIIDPYFSATKIRWILDHVKNGQKRAENGELLFGTIDTWLVWKLTNGAVHV TDYTNASRTMLFNIHDLAWDEEILKILDIPKQMLPEVKSNSEIYGQTTPFEFFGGKVPIA GMAGDQQAALFGQLALSPGMVKNTYGTGSFIVMNTGTKPTSSNNNLLTTIAYKVNGKVVY ALEGSVFVAGSAIQWLRDSVKLIKSSPESEQAARESTSENEVYVVPAFTGLGAPYWDAEA RGAIFGITRGTTDKDLIKATLQSLAYQTRDVVDTMQHDSGIEIPALRVDGGASNNDYLMQ FQADILGTKIERAATLETTGLGAAFLAGLSVGYWQDINELKQIAKIGQTFNSEMTNIERE KLYTGWQKAVKATQFFAH >gi|297149550|gb|ACGQ02000001.1| GENE 251 258399 - 259211 886 270 aa, chain + ## HITS:1 COG:PM1261 KEGG:ns NR:ns ## COG: PM1261 COG0351 # Protein_GI_number: 15603126 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Pasteurella multocida # 7 263 6 263 273 209 41.0 4e-54 MSKEEIIALTIAGNDSDGSAGMPADLHAFYARKVYGMGLMTAAVAGNTTGIYAAQIMPVD FIQKQFEVLNDDFSIKALKTGMLANKDIINCVADNIEKYNMGKVVIDPVIITKHGNSLLD NDAYQTFLNRLLPLADIITPNYYEQKKLTELSLDSEAEILAGAKKLQALGAKNVLMKGKH TGDSSDVVDILLTEDGQVHKFSKPYYKTERVNGTGDTLSAVIAAELAKGTNLIEAVKIAK DFTYEAISHPIIVGSKWGPINHWVAEDNLN >gi|297149550|gb|ACGQ02000001.1| GENE 252 259265 - 259951 780 228 aa, chain + ## HITS:1 COG:SPy1034 KEGG:ns NR:ns ## COG: SPy1034 COG3442 # Protein_GI_number: 15675031 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 6 213 18 226 263 180 46.0 2e-45 MTDKLIKIAYLYEDLMNTYGDSGDVKILSFLLKRRGYDTQVDNISLGDEFNAFDYDFVFF GGGQDFEQTVVAKDIPRHKETLEKYINAGHPMLCICGGYQFMGDYYKTNSGVTIKGLGIF PLHTVFKSDKRMIGDTKYMTEWGEVVAFENHSGQTYFDNTDKLHPLGRMIEGYGNNPQDK AEGLRYRNFIGSYSHGPLLKNVNVANAIVEMILNWHKERVTNKESITE >gi|297149550|gb|ACGQ02000001.1| GENE 253 259989 - 261284 1515 431 aa, chain - ## HITS:1 COG:SPy0036 KEGG:ns NR:ns ## COG: SPy0036 COG0015 # Protein_GI_number: 15674278 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Streptococcus pyogenes M1 GAS # 1 430 1 430 430 578 66.0 1e-165 MIERYTRPEMGKIWTDKNKYQAWLEVEIAANNAWSEIGEVPADDAEKICKNAKFTAERVA ELENITHHDVVAFTRTVSESLGPEKKWVHFGLTSTDVVDTAQGYLLKQANEILRKDLVMV KETIAKRAVEHKDTVMMGRTHGVQAEPTTFGLKLARWYAEIKRDIERFEHAARGVESGKI SGAVGNFANVPPEVETSVLKQLGLNQQEITSQVLPRDLHAEYIATLALLATSIENWATEI RSLQRSEIHEVEEHFRAGQKGSSAMPHKRNPIGSENLCGLARVVRGHMITAYENVSLWHE RDISHSSAERVILPDTTILLDYMLNRFNRILANLDVFPETMLKNMNRTYGLVYSQRLLLK LIDETSLSREAAYDMVQKLTAESWDKQKQFKDLVLNSSIIDYLSRADIEDAFDYHYYLKH VDDIFKKVGLE >gi|297149550|gb|ACGQ02000001.1| GENE 254 261285 - 262577 1633 430 aa, chain - ## HITS:1 COG:SPy0160 KEGG:ns NR:ns ## COG: SPy0160 COG0104 # Protein_GI_number: 15674367 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pyogenes M1 GAS # 1 427 1 427 430 595 65.0 1e-170 MTVIAVVGSQWGDEGKGKITDYLGQEAELTVRSNGGNNAGHTIVFNGHTFKMRLIPSGIF TARKGAVIGNGVVINPEVLLGEIKYLQEHGVDTSSLKISNRAHIIMPYNILQDVYQEEAK GANKVGTTKNGIGPTYMDKASRVGIRMCDLLEKDTFEEKLRFNLTEKNALFEKVYGKEGL KFEEIFDKYYQYGQELKKYVTDTSVYVNEAVEAGDKVLFEGAQGVMLDIDEGTYPYVTSS NSIAGGIATGIGMGPNKIDTVLGICKAYTTRVGEGPFPTELTDEIGNYIRETGHEYGTVT GRPRRVGWFDSVALRHAKRVSGIDCLSLNLLDVFTGLKTIKIATHYELDGNKIDYYPASL KELERCKPVYEELPGWDNDITKAKSLTDLPENARNFLRKVEELVGVPLVTVSVGPDREQT IVIKDLWDVD >gi|297149550|gb|ACGQ02000001.1| GENE 255 262761 - 263753 1005 330 aa, chain + ## HITS:1 COG:SA1172 KEGG:ns NR:ns ## COG: SA1172 COG0516 # Protein_GI_number: 15926918 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Staphylococcus aureus N315 # 7 329 1 323 325 488 70.0 1e-138 MSNYFSMEAFDYNDIQLVPNKCIIKSRKEADTSINFGNRTFKIPVVPANMQSVINEELAI WLAKNDYYYVMHRFEPQKRASFIKMMHDKKLFASISVGIKDDEYDFIDNLVKENLIPEYI TIDVAHGHSDYVIKMIKYIKTKMPSSFLTAGNVATPEAVRELENAGADATKVGVGPGRAC ITKLKTGFGTGGWQLAALRMCSKAASKPIIADGGIRHNGDIAKSVRFGASMVMIGSMLAG HEESPGNVIKINGKVYKQYWGSASEVQKGGHHNVEGKQLLVPYRGSIKDTLKEMQEDLQS AISYAGGKNLQSIRLVDYVIVKSSIMNGDI >gi|297149550|gb|ACGQ02000001.1| GENE 256 263773 - 264681 845 302 aa, chain - ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 2 290 10 299 306 164 35.0 2e-40 MNQKVKWSILAAIACVFWGISGLFGKNLFNSNPLITPIFLTKIRMVISGIIILLFAKITN QKPFTIWKNKKDAVTVSAYGLFGLVPVQLFYFMVVKEANASIATVLQFIGPFFVIFWMLI TKQQVYRNLDLISATLAFLGVFLLATHGNLQTLTLSPGALFFGMLSAVGVATNTLIPRRI ITSYPTVVITGWGLLIAGIALFIFDPSVPKISITWGMIIDLAGVIVIGTLIPFQWMAGAL RYISPSTASLLDAFEPISAMIGSVILFNLILSPMDIIGSVMIIGAVLLVSLNPPRLTKKA HR >gi|297149550|gb|ACGQ02000001.1| GENE 257 264743 - 266152 1535 469 aa, chain - ## HITS:1 COG:FN0504 KEGG:ns NR:ns ## COG: FN0504 COG0531 # Protein_GI_number: 19703839 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Fusobacterium nucleatum # 10 460 1 453 453 364 53.0 1e-100 MNDKRESDKLGFWSIVLLAINSIIGSGIFLTPGSVVSRVGSKALLVYLIAASFAAILAIT FAAAAKYVTKSGAAYAYSKAAFGENVGFYMGVLRYFSASVAWGVMAVAVIKSTISIFGGD PNSFQNVSIGFVVLMLLIWIINLFGQSVVKYIMNLSTIGKLLALGLVIFVGAFLLLSTGE NHFSEIDTLQIAGKNVIPAVTTSSFVMAIVSAFYAFTGFESIASGSEDMKNPAKNLPRAI PLAILIIALVYIGVVAVAMVLNPRELLETKQVVAVAAIFSSPVLRAIILVGALVSMFGIN IASSFHAPRILEAMARENQFPKWLAKRTKRNFPARTFLITLILAVLVPMAFHYSTDNLII LSATVRFLGFIVVPLGVIRFYLGKNVEPILTANKNKITDLIFPIFSILITLFLLYKYDWA AEFSVTVNGVTSLNWFAIGALAFGAVILPAILFILTKNERKKAEAMLEK >gi|297149550|gb|ACGQ02000001.1| GENE 258 266166 - 266897 1005 243 aa, chain - ## HITS:1 COG:FN0505 KEGG:ns NR:ns ## COG: FN0505 COG2071 # Protein_GI_number: 19703840 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Fusobacterium nucleatum # 3 221 4 222 243 244 54.0 1e-64 MDKPIIGISGSEIIDEGGMFPGYRRSYVNEDYVDSVVKNGGIPFIIPFTENDEVIKEQLD HVQGLILSGGHDVDPHLYNEEPLQKLGTTWPERDHFDMLLLKLAEEKGIPVLGICRGFQI INVFHGGSLYQDLSYRQGVTLKHNQGSRPDLPTHSVDVISGTHLAEILAKDKILVNSFHH LLIKDLASDLVASAKASDGVIEGLETKNGQVIGVQWHPEMLHNNEHVSYQNNLFKNLIIK ANN >gi|297149550|gb|ACGQ02000001.1| GENE 259 266977 - 267627 616 216 aa, chain - ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 3 215 7 213 215 139 33.0 5e-33 MQIKNIQAFAHKYLDNDTTGHDYWHGERVANLAKKLFLQDYPKAQEKQLDLLLIMGYLHD TIDEKICANPDEVTSEMKNLLKNENLKQDEISSILFVLNHMSYSKNIEHHFQLPMIGQYV QDADRIEALGAIGIARAFAFGGSHNQKIYDPAIKPQTLKSHKQYRNHEATTINHFYEKLF NLEQTMNTPAGRKIAQERTIYMHKFVDQFLKEWEGK >gi|297149550|gb|ACGQ02000001.1| GENE 260 267716 - 269755 1334 679 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 21 642 144 780 815 518 44 1e-145 MTYFDNDFDNLFNELNKSFFNDDNGNTRYYFSTNSTNPQAVQQIEKPKQNDNKIGRDLVK EAKNKKFDPVIGRDDQINAVIEILSRRKKNNPVLIGPAGVGKTSIVEGLAQRIASGDVPD KLCKMHIYELNINDMVAGSSLRGSFEEKIKKVIDIAQKEPNTILFIDELHNIVGAGSTDS ENNSGDAANILKPALASGDLKLIGATTTSEYRQIEKDPALARRFQAVDVPEPSSEVTIKI LQGLKKKYEEFHHVKYSDDSLKLAVELSQRYIQGRYLPDKAIDLMDEAGAKKSLGVDSTD EDSLKQRIHDYQLIKDEAAKAEDYNKASEYKDKISKLEEQLKHTDKANEPEVTAKDIYAL IEQKTKIPMSELHADEAKKNLDLAKKLKSVVIDQDKAIDIITDAIARKQVFKDTNRPTGS FLLTGPTGVGKTELAKQLAKELFGGSDHLIRLDMSEYQDQMAVNKLIGSAPGYVGYGEGG QLTEKVRHEPYSLILLDEIEKANPQVFNALLQILDDGRLTDAQGRTVSFKDTIIIMTSNA GFSDKVLKDGEVDKDALMKALELYFRPEFLNRLDAIVPFNHLSSKDMTKICGLYLQKMEN TLSKRKIKMTISDEAKKVLAKRGYDKKFGARPLRRVMEQDLQTPAAKLIMTEPDLQAVDF TADEKHLYLNGKPIVDLVA >gi|297149550|gb|ACGQ02000001.1| GENE 261 269972 - 270874 994 300 aa, chain - ## HITS:1 COG:lin2722 KEGG:ns NR:ns ## COG: lin2722 COG4814 # Protein_GI_number: 16801783 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 17 268 5 270 291 101 26.0 2e-21 MKRLRLNKDNIWLVAALIVIIMTAIPTIIWMQRSNKDRAQRHNSQVSPVIMVPGSSATTE RFNELVNLLNKNTQKKHSLLKVKVSTSGKLTYSGSIKNGDTEPIIVIGFQNNHDGYSNIK KQAGWLNVAFKSLSEQYKFNNFKAFGHSNGGLIWTYWLEHYYSDYSSQIKIKTLMTLGSP YNFTEKNINNKTQMLSDFIKYKSRLPKTLTVYSISGGENYESDGLVPENSVEAAKYVFQE QVAHFTAMTVTGSDAQHSSLPQNKQVVQVIQEYLLDKERNNNPQNRTNRRRTLLNRDNNR >gi|297149550|gb|ACGQ02000001.1| GENE 262 270846 - 272225 1355 459 aa, chain - ## HITS:1 COG:lin2906 KEGG:ns NR:ns ## COG: lin2906 COG1455 # Protein_GI_number: 16801965 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 432 11 446 450 124 25.0 3e-28 MEERLVKVLLKLREKSFFRAVQRTFAMLAPFVLIAAIFQGIYNSFLLPNSIFFNILGFDN VLSHAAFRSLRFVFSGVSWAIFGTFGVFAAYYMALYTARIYDKDSKLAGISAIFVLFFIR EPRQNFDLTSLNLKMLSVKTMLWALIIGYIVGQIFHLLGAKYQDHKYEHVAGIKERALAS FKPIVASVGLAIVTGTLINFLQINVAQSSYITGVASSVITSNNLLISIPLVTFSIFLHWL GIGTPIMAIFESTNSGAATANFNYALTHGSSWNVPYKYLGSSLVQSYGTLSGTAFVFSLI VVILLIDKNKYNKVVAKASLFPVMFNSIYGFWVAFPIYLNPLILIPLLLVPLANMVASSF AIFLHLVPVSVYPVLSGTPGVLIPYIGTNGSWQALLLTALLLVMDVFIVMPFYKIHMNVE AKLEELDKQRDAGLLPLKKQNKFVKSKEKNNEKITAEQR >gi|297149550|gb|ACGQ02000001.1| GENE 263 272352 - 272582 207 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851631|ref|ZP_05557019.1| ## NR: gi|256851631|ref|ZP_05557019.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 76 4 79 79 127 100.0 3e-28 MTKKVVLNENVNRLVDEYIRRTGISFDDLTNKALKCYIVNKLSSKDVKKTLKRKDSDTYP IDDILKNGFGNWINEQ >gi|297149550|gb|ACGQ02000001.1| GENE 264 272624 - 273808 927 394 aa, chain + ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 7 371 4 365 393 236 36.0 4e-62 MKERIDPVKLSYLLLGSLVANTGISFIWPLTTIYLTTYLHESLTMAGIVLFLNSAFTLLG NLLGGYLFDRWHPYQTIASGVFIAAISSLALIFWHGWPFYAIFLLTLGIGNGIIVTSLNS IATFMKSHNPSYIFNCLYFTQNLGLVFGSLIVGFVLPFGITYLFILAFLMFAVFEAIVLT KYYGLNLVHGHNNRAKFNKVAKEHMNKAKFYQILAILNCVLCVWIAYEQWNSNISTYMLS INLSVQSYSLLWTLNAVLIVLFQPFLTHFDDFLTAHLKGRLYLGFTLFAGAFLLLLFAHS WAIFAISMALLTTGEVLCLPAVSTYVNDRADDSEKGYYQGIVQSVTSAGRAFGPLIGALI IDNSSYLILFIFCTLIVIISIILFILSNQLKAHN >gi|297149550|gb|ACGQ02000001.1| GENE 265 273828 - 275012 949 394 aa, chain + ## HITS:1 COG:BS_yttB KEGG:ns NR:ns ## COG: BS_yttB COG0477 # Protein_GI_number: 16080087 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 8 362 2 355 397 200 34.0 3e-51 MEKTNQDPVKIKFLLLGSLIYNIGISFIWPLTTIYMHQYLHQTLTIAAIVLLLYYGTTLL GNAIGGAIFDKITPFKTILFGAIITSLCALAMFLIPAWPFYPIFLVIYGIGDGIVTTAIN SIATTMKTHASSFFFNLLYMTRNLGLVIGSLLVGIITFLGPKAWLASAFTFFVVFTILLL IFFRKLDHANLVQAAPTPTHQNISTKKNFWIIISLVACMFFCWLAYEQWDSNLSVHMLNH GISTAEYSFCWTLNSALITISQPILTYFDGYLSKKINARLYIGFVLFASSFLILIGANNY WNYLLAMFILTCGEALAFPAVSAYVHAHAPKSQAGRYQGLVLAGTSAGRALAALFGAILL NYVTMPVLLFILASLIIIALINFILFNSLRKKDA >gi|297149550|gb|ACGQ02000001.1| GENE 266 275280 - 276290 1398 336 aa, chain + ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 7 334 1 328 328 390 57.0 1e-108 MKGSFLVMRVLVTGGAGYIGSHTVNALLEDGNDVVVLDNLYTGHRQAVNKKAKFYHGDVL DTNLVTNILMNEKIDAVIHFAAYLLVGESVQEPLKYYHNNVSGMISLLKAMKTAGVKNLV FSSSAATYGVPKDLPIKETAPTNPINPYGETKLMMEKIMRWTDQADGIKSIALRYFNVAG ASLDASIGEDHAPETHLVPNILLAAKNGTGNFTIFGNDYNTPDGTNVRDYVHVVDLAQAH VLALHYVVKNQKSDIFNLGSANGFSNLEILQSAIKVTGEDIPYTIGPRRGGDPDSLVADS TKARTVLNWQPQHDNIDDIIASAWKWVQIHPNGFSE >gi|297149550|gb|ACGQ02000001.1| GENE 267 276339 - 277271 779 310 aa, chain - ## HITS:1 COG:lin0544 KEGG:ns NR:ns ## COG: lin0544 COG1680 # Protein_GI_number: 16799619 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 5 288 95 377 398 88 27.0 2e-17 MRQSLSNIGFEGSVLVIKNGKTYLNYATANKTDTSYLINSVQKFITGAAIMKAVQEGKLS LNDTLAKFYPTVPGANKVTILNLLQMTSGLSIDKALGTKPFVSDKKNLEYAIKNTKFDEN MLGKVSYSTLNYVFLSNILSNIYNTSYEKLITKSFINKLKLKHTAFSWANNKTLKKINFV LGHQLSSNGKYITQKLDLDEIHGELGAGSLLMDNYDLSKCVKYILTCNYLSKSSIKALYG MNNLANTSYSGGFYIHNTYLASNGGDNGYYTFLRTSNNAKTIIIVQTNRARGNFFELRSV MDQLIIALQK >gi|297149550|gb|ACGQ02000001.1| GENE 268 277271 - 278587 1067 438 aa, chain - ## HITS:1 COG:SPy1309 KEGG:ns NR:ns ## COG: SPy1309 COG3966 # Protein_GI_number: 15675258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Streptococcus pyogenes M1 GAS # 5 417 3 416 416 346 44.0 4e-95 MTNKRRLWQIFGPVICAVLLLIAVFLFPWDRTYSANSIFEAATSQSDRIFKGQRMKQEAL SGKYVPFFGSSELSRMDSLHPSVLAYKYNRSYTPFLLGGAESQSLAHFYGMQGIKSQLTN KKAVVIISPQWFTKKGQDKNAFSLYYSNLQAIDFLLDAKDSVATRYAARRLLQMPSGKSS ETVKYALMTVASGQPLSETQRLILQMRRRILVNEDTFFSTFQLPDRVNKIKMQAKYLPDK YTIKGLTEVANAEGSLHTTNNKFAIDNTFFKTRLNKKELKKLKGSQKHFDYTKSVEYSDF ELMLKQFAHEHTDVLFIIPPINAKWAKYTHLSDKMYQKSVKKIKYQLVKQGFNNITDLSK DGGKKYFMQDTIHLGWNGWIAVDKSVKPFMQKSYSNVNYKIDNYFFTKSWQNRTKVENIK VNKASNTNVVPTTGSKSK >gi|297149550|gb|ACGQ02000001.1| GENE 269 278580 - 278819 454 79 aa, chain - ## HITS:1 COG:SP2174 KEGG:ns NR:ns ## COG: SP2174 COG0236 # Protein_GI_number: 15901984 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 78 1 78 79 65 46.0 2e-11 MDAKEVVLNILEDLTGEDLSDQMDENIFDNGLLDSLATVQMLLNLQEETGIQVPVSEFNR EEWDTPNKIVAKVESLEND >gi|297149550|gb|ACGQ02000001.1| GENE 270 278849 - 280078 1072 409 aa, chain - ## HITS:1 COG:SPy1311 KEGG:ns NR:ns ## COG: SPy1311 COG1696 # Protein_GI_number: 15675260 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pyogenes M1 GAS # 4 408 11 418 418 355 48.0 8e-98 MINLQPYSNPQYFVLLLGLLLPLIIGLYFGRRFKVYEAIFSIAFLVLTFGGDKWQQGVTL LGYIIYQFLVTFGFQKYVKNGGKKTGIFSLFVILAIIPLTMVKVAPVIPSKEPITIGFLG ISYLTFKTVQVIMELRDGTIKEVDPVMYARFLLFFPVISSGPIDRYRRFVKDYNEAPSRE EYLNNLELAVKYLFQGFLYKFVLGWLFGSFWLPQLTQAAIINGKINGGLHLSWALLGYMY CYSMYLFFDFAGYSLFAVSISYFMGIRTPMNFNKPFSSPNIKEFWNRWHMTLSFWFRDFI FMRFTFFAMKKKLFKNRIRLSQVAYLINFLIMGFWHGVTWYYIVYGIFHACAIIINDYWL RFKRKHKKQLPSNKYTKALAIFITFNVVCFSFLIFSGFLDTLWFHPMHH >gi|297149550|gb|ACGQ02000001.1| GENE 271 280075 - 281583 1479 502 aa, chain - ## HITS:1 COG:SP2176 KEGG:ns NR:ns ## COG: SP2176 COG1020 # Protein_GI_number: 15901986 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 2 501 6 514 516 468 47.0 1e-132 MITNIIKRIDQIAIEEPDRIAYDYLGTTNTYGELKQRSDAWAYKITNLRIENKAPIMIWG GQTFEMVACFLGCVKAGHAYISIASYSNAERLTMIQDVSKSPLVIAIDELPNIDLRDLQV LKPEEVENGKFSVNEDNFVKDDENYYIIFTSGTTGKPKGVQISHKNLLSFVNWELSDYAL PENPSFLAQAPYSFDLSVMSLYPALVSAGKLVVLPHDVTENLGQLFTTLPKMQFNVWVST PSFAQMCFLDPTFNGDHHKELTHFLFCGEELTHKCAETLRKKFPNSKIFNTYGPTEATVA VTQVEINDEILSKYDRLPIGKVKEDTEITIDESKGEKPGQGELIISGPSVSKGYLHNPEK TAAAFFKTDDKASYRTGDAGFFDGDMLFYRGRIDFQIKFNGYRIELEEINFYLSKNDLVR YGVVAPKYDKEHKVKQLIAQIELNDGVKDKYSEAEITKLIREDLAKNVMPYMIPQRFVYR EDMPISQNGKVDIKAVIKEVNA >gi|297149550|gb|ACGQ02000001.1| GENE 272 281599 - 281784 148 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851640|ref|ZP_05557028.1| ## NR: gi|256851640|ref|ZP_05557028.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 61 1 61 61 103 100.0 4e-21 MQNVRGELMKKIEETEKKPSKGKAITSFVLRTIFYFVVLLALIYLYEYSGIDSVHFIYNE F >gi|297149550|gb|ACGQ02000001.1| GENE 273 281853 - 282152 183 99 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282933290|ref|ZP_06338676.1| ## NR: gi|282933290|ref|ZP_06338676.1| hypothetical protein HMPREF0886_1312 [Lactobacillus jensenii 208-1] # 1 99 1 99 99 157 100.0 2e-37 MDKTVKKKVLFLTKLSGWLCFFPIAFFWELYLWGYEPSFFLLGMMGIILVFALVLLLSDV TELCYNRNRMRRWMIFAAVFVSVLVAVPLYFAMRKLPKK >gi|297149550|gb|ACGQ02000001.1| GENE 274 282181 - 283326 933 381 aa, chain - ## HITS:1 COG:no KEGG:LBA1927 NR:ns ## KEGG: LBA1927 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 39 380 35 378 378 439 64.0 1e-121 MLKWLKKVFRIFFLCLILLGSFYGAYYLYQRYERYKTYETLLAKRPTLKKAKDGTSISAA WYKEKEFEKKLSKKYPWIYTLSFDTPALTYVGRNIAIPGLVSTKAYDFSKKKMDLATNMT PQGIAFADKYMLISAYDGLHKHNSVIWVLNKQTGKYIKTLQIKGRPHLGGIAYDPVAKNI WVTSSLDGESALASFSLKELKNNKGKRPVKYNNQMALPGISRASTVTYFDNQLFVGFFNM YEKGTVSGYTIARSGNFKGSITTDEIKASTGSAAWSTATGSTSMDKQIQGIAFYQDKIFL SQSYGSQNSKLYIFPVSALNSLDEKNAERVIELPPYLEQITVENGQLICLFESGSKNYAR SQIMIMDRTLSLNINALFSSY >gi|297149550|gb|ACGQ02000001.1| GENE 275 283423 - 285045 2159 540 aa, chain - ## HITS:1 COG:L121483 KEGG:ns NR:ns ## COG: L121483 COG0281 # Protein_GI_number: 15672882 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Lactococcus lactis # 1 540 1 540 540 650 58.0 0 MKTMDIIHNPFKNKGTAFTEEERRKLGLIGTLPGSVQTIEQQAKRVYDQYKIRPDGMQKR KFLMEVFNTNRTLFYYVLSHHIEELLPIVYDPVIAPAIEQYSEIFMLPQEAAFLSIEHPE DIEESLKNAADGRDIRLIVVTDAEGILGIGDWGVNGVNISVGKLMIYTAAAGINPSQVLP VSLDVGTNNQELIHDPLYLGLKKPRVTGKEYYDMVDKFVASARKLFPDVYIHFEDFGRDN ATKILNKYRNEIPVFNDDVQGTGIVSLAGVLGALEISGQKITDQRFLTFGAGTAGMGIAN LLCKELQLQGLSEEEAKKHFYLVDKQGLLFDDTEGLTPEQKPFTRSRDEFDNSEELTNLE AVIKAVHPTVMIGTSTTPGAFTEGAIREMAAHTERPIIFPISNPTRLIEAMPKDLLEWTD GKALIATGIPVEDVEYKGVSYAIGQANNALIYPGVGLGVLASKARLVNDQMISAAAHSLG GIVDTTKPGAAVLPPVSKIHEFTKTVAKAVAQSAIDQGLADPDITDAEKAIEAIKWEAKY >gi|297149550|gb|ACGQ02000001.1| GENE 276 285181 - 286056 754 291 aa, chain + ## HITS:1 COG:CAC1588 KEGG:ns NR:ns ## COG: CAC1588 COG0583 # Protein_GI_number: 15894866 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 288 1 286 293 166 32.0 6e-41 MNLQDLKYFHELVNQKSYTKTADSFGVTQPTITAAIKRLETEFGTTFFIRDQSHKSVNVT NIGMQFDEHVKKILKEIEVAQTEINQHLSEDILFGLPPIIGDEYFPKIAGKLLKANILKH LNVQEHGSHELKQMLLDGQINIALLGTMQVANNPDLKLTVLKKFPMEIIVNKNHPLAKKK GIFFKDLENENFIDLTNDFIHSAALKQLKEANQINIKTIYNSPDVTIVKSLIEQGLGISL LTSLSIENNSNLVALPLLDKNQPEFILVAAARKNYLFKTQEQKLWDILEKS >gi|297149550|gb|ACGQ02000001.1| GENE 277 287090 - 287557 410 155 aa, chain + ## HITS:1 COG:L110441 KEGG:ns NR:ns ## COG: L110441 COG0517 # Protein_GI_number: 15673261 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Lactococcus lactis # 1 155 1 152 153 88 34.0 6e-18 MFSPTIQHLIEQKSGAFLIPASKIAFVQEDAPLYHAFLILTKVKYAKIPVLNHKQQVVGL LSLSMITEKMLTDSDISIEPLSYMKVSEVMQTKFTTINFVNTTMEAQLHLLINNPFIPVV NDSGVFQGLLTRREWIKAFNYISHELDQKYNITEK >gi|297149550|gb|ACGQ02000001.1| GENE 278 287688 - 289544 1892 618 aa, chain + ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 592 1 590 593 452 43.0 1e-127 MKHQWKLIVALILGFIGAILDFVMHMPHLTATIIDIAALLMALSMLKEMIMDLKAGHWGV DILAIIAVISTVAVNEFWAAWMILVMLTGGESLEDYATSQADKELRSLLSNNPRLANKVV DGVVSEVKVDDLKIGDHVLVKPGSQVPVDGIILTGSSSFDESSLTGESVPVEKGIDDTIM SGSINGDSAITMQVTKLAKDSEYQTIVALVQSSEAAPAKFVKMADRYAVPFTIISLIIGI SAWISSGDPTRFAQVMVVASPCPLLIAAPVALVSGMSSMSKNHIIVKSGTVLEKLSRAKT FAFDKTGTLTRNQLVIDQIVPEKGFNKEELQIFAASVEQASSHIIATSLVKATPKAELHS VTDLEEVTGQGVRGKVADKIVCVGKLSFVAPDKNLKNINSTAIYISIDNKFGGYITFADQ IRPETPDTISSLRAQGAQHIMMLTGDNSEVDQKVAAVAGVDDVRSSLLPAEKIAAVKGIK SENRPVVMTGDGVNDAPSLMAADVGIAMGAKGATAASESADAVIMVNDLSKVSDAVAIAK HTMKVANIDVLTAISIVILIEIVAFTGIIPAMAGAILQEVVDLITICLALLAKTTPKIMR NKKTTNLQKKTELRKMFS >gi|297149550|gb|ACGQ02000001.1| GENE 279 289607 - 290764 1319 385 aa, chain + ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 381 1 376 379 243 44.0 3e-64 MHFIGELILILLITTLLGQLFTRLNLPAVIGQLLSGILLGPAILGLIKTSSTITLFSELG VIFLMFLAGLESDLELLKKYFKLSFSVAFIGVILPVIFMTIASQLFGMKFLEALFIGIVF AATSVSISVEVLHDANQLHTKAGTAILGAAVVDDILAVVVLSLFTSFSHEGGNSGLTNNL VLNLIIEVIYFVIVWLIFKFIAPYFMKYAERIEVNYSVVIASLILALGLAWAADFTGLSA VVGAFFGGLAIRQTPQYKEVNSAVSAIGYSVFIPVFFADIGLSMTFSSFTQDLIFIIVMT VLALLSKFWAGKYTCELFGFNKIDANIVGAGMISRGEVALIVAQIGIAHHLFPEDIYSSL ILVIIVTTVLSPFILNNYLKQKATV >gi|297149550|gb|ACGQ02000001.1| GENE 280 290837 - 291922 692 361 aa, chain + ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 97 359 80 344 344 167 40.0 4e-41 MSIVDQLVDKLNNNPAFVFTSVILVIISTLFLYLWIKEPRRLITGNIFALVVLISGFWLS ILIFKLTPPAIHYLWSLAFVAGILLVLLLSSFAWLFLLWNAYFVWKYESHTLPNMLTLFL GFALIGLWIYQKFTHWLHLPPYLAPILGLAPTIATYLTIVMLSFIINVFLYQFYPKNHRE NYLIVLGAGLINGTKISTLLANRINTAIKYAKKVKKKTGNWPKIIMSGGQGPDEELPEAA AMAEYAIKAGIPREIIILENQSTTTLENMTFSKKIIEKDTKNKPYTCKFFSNNYHIFRAA LLAKKAKLNANGVGAPTRLYYLPNALLREFAGIFVLNKKRHIITISLITLIGILSVLFKL F >gi|297149550|gb|ACGQ02000001.1| GENE 281 292071 - 293009 1228 312 aa, chain + ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 3 308 4 315 318 292 55.0 5e-79 MKFKKIVVGALALLTAAVATACSSNNSSKGSSSTDYTPKKVLNVQFVPSSQASTLEAKAK PLESLLKKELGIPVKVTVSTSNNALVEAMSSHQVDVGFLPPDAYVLAHKRKIADVLLQAE RYGYDEPSGKMNKTLMDKYRAMIVVKKGSKIKSWKDLKGKKIAVQESSSTSGYVYPVAEL YKKGLNVVKDSTLTQVQGHDQAVLAVYNGDVDAAFVFADARNIAAKDTPQVMKDVVPIYF TKWIPNDTISVRSDMSQAYRTKLKKAFKNLMKTEKGKKIMSSIYSHMGYKDSKDSNFDVI RDYEKTIEKVTK >gi|297149550|gb|ACGQ02000001.1| GENE 282 293256 - 294182 857 308 aa, chain + ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 2 301 3 312 318 260 49.0 3e-69 MNLKKAVIALVTISIAGLMCACSTSKSNNATNYTPKELNVQFVPSVQGSKLQDRVKPLEK LLKKQLDIPVHVSVSTSNTALVEAMSSKKVDVGFIGGDTYVLAHKKKAADVLLRAMNEGY DEPSGKPNNKKMSHYRSMIVVKKGSKIKTWKDLKGKKIAVQSPSSTSGYVAPIGELYEKG LSIPKQTRMVQIQGHDQAILSVYNGDVDAACVFADARNIAAKDEPKVMTDTKPIYFTKWL PNDTISVRSDMSKTFRKKLSAAFKNIIKTKEGKNVLYNIYNHLGYVNAKDSDFDIVRKYQ KDANKASE >gi|297149550|gb|ACGQ02000001.1| GENE 283 294463 - 295542 1042 359 aa, chain + ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 6 355 3 349 350 256 47.0 7e-68 MQLKIKKVLSISILLSAVGLSMAACSNKSSSSNAKNADHSIALVTNNTGVDDHSFNQSAW EGLKRYGKAHDLLKGNGGYNYFESSSASDHIPNIEQAINAKYKTIVGVGYELGDAINTES KKHPKNNFIMIDNVINRKNVASATFKSNDASYLAGYAAAYTTKTNVVGFVGGAHGVILNL FDAGFAKGVADAAKEQNKKIKIINAYVGDFSSVDKAKAIAKAMYANKADVIYQVAATAGE GVFQEAKDINTKKAANDKVWVIGVDSDQSSLGVYKDKDGKKSNFTLTSTIKGIGKAVEDI ANKAYDGEFPGGKHFVYGLKGNGTYVVKGNMSDSAWAAVNKAKQNVIDGKVKVPTTPSN >gi|297149550|gb|ACGQ02000001.1| GENE 284 295602 - 296675 1401 357 aa, chain + ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 1 352 1 348 350 259 46.0 6e-69 MNLKKVAILGVATLSAVAMTACSNKTTTNSNGKKNKGTVALVTDGHGVDDHSFQQSAWTG ILSYSKEHNLKRGTNGYQYFVTGSAANYETSLQEASKNYDLVFGVGYELKDAVSSIAKKN PNKKFAIIDETIKGQKNVVSANFLSNQASYLAGVAAAYETKTNVVGFIGGAHGDIVDLFD AGFTKGVNDTAKKLGKKITILNQYIGDFNSSDKAKAIAQTMYAKKADIVMHAAGGAGDGL FEEAKAINQTRKASDKVWAIGVDTDQSNLGNYKSKDGKKSNFVLTSVITGVNVAVKDIAD RTYEGKFPSGKDLIYGLDTNGVSITKGQISSKAWKASRTARTAIIDGKISVPKYPSK >gi|297149550|gb|ACGQ02000001.1| GENE 285 296874 - 297971 1348 365 aa, chain + ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 10 361 3 349 350 270 48.0 3e-72 MLTLINTKLKKVMGTGLVIATTGLVLTACQGKGAKTSSSSKANHSIALITDSNGVDDHSF NQAAWSGFQAYGKEHGLSQGKGGYQYFQSSSASDYEPNFTQAVNAGYQTIYGVGYMLSDS VKTAAAKYPKKNFVIIDDVITGKKNVVSATFKSNDSSYLAGVAAAYTTKTNTVGFIGGAK SSVIDLFEAGYIQGVKDTAKKLGKKITILDQYIGDFTSTDKAKSIAQSMYAKKADIVYQA AGSAGNGVFQEAKDLNSEKAVNDKVWVIGVDIDQASQGKYTAKGGQKSNFTLTSVLKGLN FAVKDIANKAYDGKFPGVKHLVYGLQHDGVSLTKGNLNSKAWKAVQQARQDIIDGKIKVA TSPSK >gi|297149550|gb|ACGQ02000001.1| GENE 286 298056 - 299591 187 511 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 261 482 5 213 305 76 26 2e-12 MEKENTNIIEMRHIVKDFNGFKANNDINLTLRKGEILALLGENGAGKSTLMSILSGLLKP TSGEIYVRGKKVVIDGPNAAKDLKIGMVHQHFMLAKAFTVLENIILGHETKRGIKLDFKT ARKQIMALSEKYGLAIDPDAKIANITVAQQQRVEILKILYRGADILIFDEPTAVLTPQEI TEFINIMKNLRNEGKSIILITHKLNEIKQSADRVTVIRHGKSIGTVDVEGATDESLAEMM VGRHVNFNLPKKEAKVGKTVLSVKDLKVNEDRGTLAVKGLTFDVHAGEILGLAGIDGNGQ DELVEALTGLRHVKAGHFTIKGTDMTNKRPRKITELGVSHVPADRQKFGLILEMSLADNI ALQTYYQKPYSNHGIINHKAITEHAKKLIKKFDVRTKDENLKAGELSGGNQQKAIIAREL DRNSDLIIVFQPTRGLDVGAIEYIHKQLLAQRDAGKAVLLISYELDEIMQLSDRIIVLHN GQESGEVLPEKTSERELGLLMTGAHKKEGTN >gi|297149550|gb|ACGQ02000001.1| GENE 287 299591 - 300736 1505 381 aa, chain + ## HITS:1 COG:L166804 KEGG:ns NR:ns ## COG: L166804 COG4603 # Protein_GI_number: 15673311 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Lactococcus lactis # 4 352 1 350 364 314 50.0 2e-85 MFKVNAETKKILVPLISIVAGFLVGAVIMLLWSYNPILAYTSMFSSALGNMNGLGETIRE ATPLIFTAIGFSIASSAGFFNIGLSGQAQGGWLAAIWIALANPHMPKYILLPYAIIVGTL VGAAIAGIAGVLRAYFGTNEVIVTIMVNYIVLYSCQYLMQNVMSDRLRVSTDATKTVTDN GSLRLDWLSNMFGGSRINAGIFLALIALVVFWFIMKKTVTGFEIKAVGLNPFASRYAGMS AKKNIIVSMLLSGAFAGLGGVVQGLGTYQNYFTQTTSVDIGFDGMSVSLLGGGTALGILL AALLFSILKIGGLGMQTLAGIPYEIVSIVIAAIIFFVAINYVIGLLFEKKKKNYNQPETI AKVSNNSVDGPAVKVGKGGEV >gi|297149550|gb|ACGQ02000001.1| GENE 288 300736 - 301692 1042 318 aa, chain + ## HITS:1 COG:SP0848 KEGG:ns NR:ns ## COG: SP0848 COG1079 # Protein_GI_number: 15900735 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 318 1 318 318 403 69.0 1e-112 MNITTMLALIVSSTLVYSAPLIFTALGGAYSEHSGIVNVGLEGIMTIGAFSSIVFNLTFA STFKSATPWLGVIVAGICGLIFSLLHAVATVNWRADHIISGTVLNLMAPPLGVFLIKAMY DKGQTENISANFGYYNVPVLSNIPVIGDIFFKNTSAPAWVAIILSIVLWWVLYKTPFGLR LRSAGENPQAADTMGVNVYKMRYAGVLISGLLGGIGGGVFAQAISGNFSVSTIVGQGFMA LAAMIFGKWDPIGAMLSSLFFGFAQSLSIIGSQLPFISHVPSVYLQIAPYVITIVVLVAF FGKSVAPAADGQTYIKSK >gi|297149550|gb|ACGQ02000001.1| GENE 289 301790 - 302509 765 239 aa, chain + ## HITS:1 COG:SPy1399 KEGG:ns NR:ns ## COG: SPy1399 COG0363 # Protein_GI_number: 15675320 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Streptococcus pyogenes M1 GAS # 1 234 1 234 234 293 63.0 1e-79 MKIIVTKDKITGAAKAFEIFSREIKAGAKVLGLATGSSPIELYQNMVNSDLNFSNLTSIN LDEYVGLSPQNKQSYWYFMNEHLFKAKPFKHSYLPDGQTNNIAAEVEHYNQIIKENPIDI QLLGIGRNGHIAFNEPGTSFDSTTHEVKLTQSTIEANARFFDNIDDVPKSAICMGIASIM SAKKIVLLAYGEKKRWAIKNMIEGPITEEMPASILQKHPDVTIICDEAAAQDLDKKYLA >gi|297149550|gb|ACGQ02000001.1| GENE 290 302663 - 303313 925 216 aa, chain + ## HITS:1 COG:SPy0121 KEGG:ns NR:ns ## COG: SPy0121 COG1428 # Protein_GI_number: 15674338 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Streptococcus pyogenes M1 GAS # 3 213 2 210 213 224 55.0 9e-59 MTVIVLSGPIGAGKSSLTSILAEHLGSNAFYEDVSKNPVLPLYYKDMKRYTFLLNTYLLN KRLAQINEALSENNPNVVLDRSIYEDALFFKMNADSGIADPTECDIYVDLVHNMMEDVPG NPHKKPDLLIYINVSLDTMLSRIKRRGREFEQLETDPSLKEYYARLRNYYEPWYENYSES PKMVIDGDKYNFVDNEDDRKAVLELIDNKLKELGNL >gi|297149550|gb|ACGQ02000001.1| GENE 291 303338 - 304009 871 223 aa, chain + ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 212 1 213 217 254 61.0 8e-68 MTVIVLSGPIGAGKSSLTSILSKYLGTQPFYESVDNNPVLPLFYKDPKKYAFLLQIFFLN TRFHSIKAALTDDNNVLDRSIYEDSLFFHMNADIGRATKEEVATYDELLDSMMKELEHMP KKHPDLLVHIDVSYETMIKRIQKRGREFEQLDYDPTLEDYYKRLLSYYEPWYENYDYSPK IKIDGDKLDFMASEKDRQEVLDTIIAKLKEMDKLPEDWTPSHN >gi|297149550|gb|ACGQ02000001.1| GENE 292 304204 - 305700 1034 498 aa, chain + ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 496 1 510 513 369 39.0 1e-102 MSIIKVNNLSFSYDNSDKVIFSNLNLNLDSSWKLGLVGRNGRGKTTFLNLLRNELQGRGE ILTSITFSYFPAQIANPSNLVLYELQSQINFEVWQLERELNLMQLNPDLIWQPFNTLSGG EQTMILLAVSFVNQNSFALIDEPTNHLDAANRRQVANYLKKHKEGYIIVSHDRDFLNEVV NHVLAIENNEIHLYQGNYASYEATKDKRDKYNQDKNIKLKSEIASLKKSASQIKNFSEKS EKNKTAAAHKNEIHADINKGFYGHKAAKIMKRSITMQQRVNKKITEKEGLLTNIEQAPDL LMNFSPNYHQTLLELQHLSLKIANKSLFHDLNLIIKNHGIVALEGKNGSGKSTLLKFILN KSKAEASGKIILANGLKISYLPQTFSTYTGTLKEFSEKERIPYSDLLNNLKKMGFPRDDF TLKIEDMSMGQQKRVALAKSLVEEADFYLWDEPANYLDVFNQDQLIKLLKQTRPAMLLIE HDKYFIEQVADKKIKLTS >gi|297149550|gb|ACGQ02000001.1| GENE 293 305737 - 307323 184 528 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 343 516 44 227 329 75 33 4e-12 MSFLKLLKINLIRAITLILATVLGAVLVAVGNSYLTNIGNSLQKQDINTFLRYMLLFFVV LVGGESIEFIASYLFAKQVQEYLHEVRERITRKLFLQKETTKITDVQNSLTNDLNMMNDN FLTPLYKIISSIFNIVFSIAIVFTYSWILVVLILILAVVMFVLPQLISKPLEKATVAVSE NNQAYLDTIEKWFKGIAILKRYNVKSKLFQVLAKSSNRLEKANVNRSKKVSQTSIFNNLV NGSAQVLIIFTAGLLIITKSMPFGAFFSIGNFSGVIFTGLFTVVSQITLIQSSKQLNKKI TANMATVDTEVASDSLADFATVSGQNLTLNFPNGEQLRFPDFEVKQGEKILLTGESGAGK STLFKLILDELTPSSGQITFKDKNGKFLKPNLNQIGYIPQDPVLFPGTIQENITLFNDSL NEKAKYWAEKVQLGTDLTKFPQGIKTKVDLDKNNLSGGQKQKVVLARTQVYESKLVLIDE GTSAIDSKNTQIILQNLLQSSATVIFIAHNLTPEMHKLFDRELKLTKV >gi|297149550|gb|ACGQ02000001.1| GENE 294 307494 - 308720 1655 408 aa, chain - ## HITS:1 COG:L78730 KEGG:ns NR:ns ## COG: L78730 COG1304 # Protein_GI_number: 15673234 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Lactococcus lactis # 8 365 20 381 383 342 49.0 6e-94 MTVYYKGFPQSDRNEAIKMVNVDELEDRVRKVMPEAAYYYIASGSENEWTWRNNTTAFNH FQIVPRSLTNMDSPSTATQFMGMDLKTPIMICPIACHGIAHKDAEVATAQGAKAAGALFS SSTYANKSVEDIAAATGDSPKFFQLYLSKDWDFNKMVFDAVKSAGYKGIMLTVDALVSGY REANLRTNFTFPVPLDFFTRYVGAEGEGMSVAQMYANSAQKIGPADVAKIKEMSGLPVFV KGIMNAEDAYMAIGAGADGIVVSNHGGREIDTAPATIDMLPEITAAVNGRVPIILDSGVR RGSHVFKALALGADLVGIGRPFLYGLALGGAKGVESVINQINNEFKILMQLTGCKTVEDV KHADIRQINYTADNLPSNTDPSVRRAYPVTKENQMEGIQDAATGASKH >gi|297149550|gb|ACGQ02000001.1| GENE 295 308945 - 310252 1537 435 aa, chain + ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 6 434 3 433 434 395 55.0 1e-110 MNIIRKYFDLDKLGTNIKIEFLAGLTTFVSMSYILFVNPNVLGVSGMDKGAVFTATALAS ALGCFIMGLASNYPIATAPALGINAFFAYTACLGMHVKWQTALAAVFVASFIFILITMFK LREKIIDAIPVDLKHAISAGIGLFIAFLGLANAGLVEASKSTFVTVGSLKNPTVWIAIFG LLVTIVLMIMNVPGAIFIGMVLAAIFGILTGQIKLPTAVVSSAPSIAPTFGQAFKHIGDI NTMQMWVIVLTFLLVTFFDTTGTLIGLASQAGLMKDNKMPRVGRALAADSGAMMAGSILG TSPVGAYVESSAGIAVGGKSGLTAVFVGIFFLISMIFSPLLSVITTQVTAPALIIVGVLM AQNLAKVDWTKLEIAVPAFLIVIGMPLTYSISDGLSWGMITYPITMIAAKRGKEISPMMW VLFFIFIIFMWVLNA >gi|297149550|gb|ACGQ02000001.1| GENE 296 310348 - 311658 1617 436 aa, chain + ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 4 431 1 429 434 361 51.0 2e-99 MKNINRFFKLTEQGTSFKTELIASLTTFVSLSYMLFVVPNILTASGMGKGTVFTALVLAS ALGSIVMGLVANYPIALAPTLGSASFFAYTVCQGMKISWETALAGVLVASLLFVLITIFK LREIVINAIPQDLKYAISAGIGIFIAFIGLQNGKLIVNSDSSLVGLGSFSNPAVWIAVFG LLVTIVLMCLGVPGSIFIGMVVTAIFGILIGQIPLPKEFISMPPSIAPSFGQAVTHLGNV NTVQMAIVVITFLLVTFFDTAGTLIGMTQQAGLANKDGKIPRIGKALMSDSIGMIISSIF GVSPLGTVVESSSGIAMGGKTGLTAVFVGFWFLIAMFFSPLLTVIPTTVTAPALIIVGVL MASNLAKINWDKFEVALPAFLIVLGMPLTYSISDGLALGMITYPITMLASKRGKEVSPIM YGLFFIFIIYLWIINI >gi|297149550|gb|ACGQ02000001.1| GENE 297 311695 - 313203 1084 502 aa, chain - ## HITS:1 COG:L113400 KEGG:ns NR:ns ## COG: L113400 COG0038 # Protein_GI_number: 15673646 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Lactococcus lactis # 1 485 6 493 512 328 40.0 2e-89 MEKNKLNNLKLMAISLLVGLVSGLVVGAFRWLIGLLQSYWLYSFRLVHGNYGYWILIILG LLLTGLIAGYLVKNEPHAGGSGIPEVELQLQGKLQLNWWNILWRKFIGGILAIGSGLFLG REGPSIQLGAAVGQGISNKCSKTNQRVLLAAGAASGLSAAFGAPLGGTMFVLEEVFHNFS PRVWLNSLTAALAANFLVSNLFGQRPVLAIPYNHSFSVDLYWHLLVLGVLLGIIGRIYQW GLLNGKKIYTKIPLPRWLHGLIPLGMLIPIAYFVPQVIGGGNQLILNWHGFNAIEILFLV FLLRISFSIISYDSGLPGGIFLPILTMGALLGALYGMIMVNLGLLPRVLIVNLVIFSMAG LFSAIVRSPFTAILLITEMVGSLLHLMPLAVLALVAYLVNDLLGGKPIYESLADRMEHSN IADYADNVDQLTVSIFENSKLADKEIKDIAWPSKTLVRLIHRGAHDIIPTGKTKLLAGDL VVLEIDSNARGCIYDQIKDMQK >gi|297149550|gb|ACGQ02000001.1| GENE 298 313286 - 314245 871 319 aa, chain - ## HITS:1 COG:CAC0366 KEGG:ns NR:ns ## COG: CAC0366 COG0679 # Protein_GI_number: 15893657 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Clostridium acetobutylicum # 11 316 7 297 301 79 26.0 9e-15 MTTFISSISSVVVVILIIALGFILRQKKWFADTFAGNISKLIMQIALPASIFISVQTHLT RSSLLNLFEGLLVPAIGVFLSYLIAFILIAVFKIPAGRRGTFINTLANANTIFIGMPLNI ALFGENAMSYFLIYYVINTVSTWAIGIFFMQSDSLPGKKKEEAHFNWKKLLPMPLLGFIV AILWLLTGISLPSFVSSTFTYVGNLVTPLSLIYIGIMLADIGLKNIKLDKDTILAVLGRL VIAPIIMLGLVEWLMPSMGVHMANLMKDTFIIQSATPALSVLPILADQGHGDVEYATNVV AITTIFFVVVVPVLMLVAS >gi|297149550|gb|ACGQ02000001.1| GENE 299 314390 - 315778 1958 462 aa, chain - ## HITS:1 COG:YPO1541 KEGG:ns NR:ns ## COG: YPO1541 COG0362 # Protein_GI_number: 16121814 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Yersinia pestis # 2 458 4 467 469 473 51.0 1e-133 MQEFGVIGLSVMGKNLALNIHSKGYSVSGFSIDKPEVDALAKYADDKLKPTYTWEEFVNS LEKPRKILIMIRAGKPVDLTLEKLTQLLEPGDIVIDGGNSNFHDTRRRFHELEKFGLHFI GMGVSGGEEGALHGPALMPGGDEAAFEKVRPILEAIAAKTPEGRPCVSYIGPEASGHYVK MVHNGIEYGIMQLFSEAYDMLRKACGLSNDEMSDLFDKWNHEDLQCYLAEITAEVLKKDD DLTDDKVIDHILNEASYKGTGNWTLEDAIVLGAPISVIAEAVLARFMSKATTRTGKEITV DQSKIDANLPEVIASALYLGQAVCYAQGFMQLKMAAKAYDWTLRYPGIAQNWEAGCIIRS KTLKDIEDAFEKHPDINNLFEAPFFAKMMQDRLPDLRKVVSVAAENGIPTPTLSAALNYL ESIFNPSLPANLIQGQRDYFGAHTYFRNDREGVFHTEWYDEK >gi|297149550|gb|ACGQ02000001.1| GENE 300 315877 - 317496 1699 539 aa, chain - ## HITS:1 COG:no KEGG:SH2426 NR:ns ## KEGG: SH2426 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 15 199 89 273 1855 119 44.0 5e-25 MLSTLFLAGNKALATNADSHASNQTSESASSESSAAKESTTSSASSESSTAKESTTSSAS SESSAAKESTTSSASSESSAAKESTTSSASSESSAAKESTTSSASSESSAAKESTTSSAS SESSAAKESTTSSASSESSIAKESTTSSASSESSVAKESTTSSASSESSTAKESTTSSAS SESSTAKESTTSSSTEKEEEVTGVVYAPVINNNPGWMIALLDGEGHYTGKYIPTNTSWKV FAKKTISNREMYRLGSDQQWVPAEYVTVKNLEVVSKTTTEPKKSDSKEEALSGVAYVPTL KDHPTWQVALLDGDGHYTGKYIPTNSNWKVFAKKTINNRLMYRLGSDQQWVPAEYATLKS TVAEKTSESVPTKVTSNEEALSGVAYVPTLKDHPTWQVALLDGEGHYTGKYISTNSNWRV FAKKTINNRLMYRLGSDQQWVPAEYATLKSTVAEKTSESVPAKATSNEEAMSGVAYAPVI NNNPGWMIALLDGEGHYTGKYIPTNSNWKVLAKKTISGVEYYRLGNDQQWVAARYLKLK >gi|297149550|gb|ACGQ02000001.1| GENE 301 317704 - 319509 2478 601 aa, chain - ## HITS:1 COG:L0199 KEGG:ns NR:ns ## COG: L0199 COG0028 # Protein_GI_number: 15674026 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Lactococcus lactis # 1 563 1 562 567 525 45.0 1e-148 MAKINGSDAMFKVLYDWHIDHIYGFPGGSFDSSMNAIHNWKDRIKFIEVRHEEAGALAAS AEYKLTGKVGVCFGSAGPGAAHLFNGLYDAKFDKTPMVAIVANVPEGRQDIDFFQAFDED KWFLNASVFCRQPKTAAQIPVVMDECIRQAYARKGPAVMIISKDLGWEKIDDNFRVNYDA RVEDNYAAPTKSSVEEAVKLLKEAKNPVMYYGNGAKGCGEEIKEFAEKFKTPLLTSYLGK GIVEDEFPAYMGTIGRIGPKPANEIQGHTDLVVWVGNNSPFSVLWFPKDAKVIQIDVDPA KFGKRHKVDVSMLADAKKSLRAIIDAGEARDESPLYKAAIADRQNWDEWLDSFKDSKESP VRQEPIWDVINKEAADNAVFAIDVGNVNMDHTRLLKMHGDQKWTTSGLHATMGYGAPAAL TAATVYPDREVWQLAGDGGFAMMCEELLTMARYNMHVLNVVFTNETLGYIQAEQEDESHQ PLSGVIIPDNDWAKVAEGMNVKGVTVRTKEEFEAAVKEWKKMDGPMLIDIKYTHDMHYST ELNTLDDPAFVAKYQAEPLKPFSYFAEKFGLDTDSATGASAHEEEVEEEPEEDATSGASA H >gi|297149550|gb|ACGQ02000001.1| GENE 302 319816 - 321720 2121 634 aa, chain - ## HITS:1 COG:BS_gidA KEGG:ns NR:ns ## COG: BS_gidA COG0445 # Protein_GI_number: 16081153 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Bacillus subtilis # 5 632 3 628 628 823 66.0 0 MLKTYSSNEYDVIVVGAGHAGCEAALASAKMGQKTLLITISLDMVAFMPCNPSVGGPAKG TVVREIDALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKVQYHETMKRTIEDTPN LTLRQATVDELIVEDGVCHGVVTNTGAKYLAKSVVLTTGTSARGRIIIGELTYSSGPNNT IAAIKLSENLEKLGFKLRRFKTGTPPRVNGNTIDFSKTEEEPGDSEPRHFSFETKDEDYL KDQLSCWMTYTNETTHKIIRDNLDRAPMYTGVIEGIGPRYCPSIETKIVRFADKPRHQIF LEPEGKHTDEYYVGDFSTSMPEEVQQDMVHSIAGLENAEMMRPGYAIEYDVIEPWQLKHT LETKNIKNLFTAGQMNGTSGYEEAGGQGIVAGINAALRAQGKPGFTLGRDEAYIGVLIDD LVTKGTNEPYRLLTSRAEYRLLLRNDNADLRLTEYGHKLGLISDERYQKFEEKKAAIKQT LAELYDITIHPNDEVQEYLESIGQSPLNAGLKASAFLRRPGVTIAAIEKLSGTKLNSDRY VREQVEIDVKYAGYIKKQELQVQKLRRLESKKIPEGIDYSKIAGLATEARQKFEKIRPES IAQAERISGVNPADIAILTVYIQQGKYSKVEDKG >gi|297149550|gb|ACGQ02000001.1| GENE 303 321730 - 323112 1408 460 aa, chain - ## HITS:1 COG:SP1016 KEGG:ns NR:ns ## COG: SP1016 COG0486 # Protein_GI_number: 15900887 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 6 460 5 457 457 503 60.0 1e-142 MPTLTEFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGKDLSKVASHTINYGHIID PETSKVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKHGARMAEAGEFTK RAFVNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGLLDKIRNMRQEILDTLANVEVN IDYPEYDADQVTATQMQETSKKVIEAINRLLKTANQGKIMRNGLATAIVGRPNVGKSSLL NYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEKIGVERSKKAI EQADLVLLLLNASEALTTEDEKLIDYTKNKKRIVVLNKADLGIKLNKEDLKVQTQASIVV TSILKEENLNELEEAISKLFFSGIHNSNDEVLVTNQRQAGLLEKAKDQLTDVVDAVDNDV PLDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLGK >gi|297149550|gb|ACGQ02000001.1| GENE 304 323206 - 324063 856 285 aa, chain - ## HITS:1 COG:L131778 KEGG:ns NR:ns ## COG: L131778 COG0706 # Protein_GI_number: 15672111 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 33 284 23 269 269 218 44.0 9e-57 MKDILTKKNVKRFIAFLAVLTIAVVLTGCANNTGNVSHTSGSWWDRYVIYYFSQFLLWLA DLLGKNYGWTIIVFTILVRLLLFPLNAISIKSTTKQQQLQPEIDKLRAKYPGNDAESRQL LNAETQKLYKEAGINPYLGCFPMLLQLPFMFALYQAIYSTKQLQDGTFLWMNLSKADPYY VMPILAAVFTFMSSYVAQMSAPESSSQSMTKAMMWITPLIVAVPAISFPTAITLYWVVSS IFSVVQTFILQNPFKYAREQEAKKQAEKERQRKIRRAYKKLNRKK >gi|297149550|gb|ACGQ02000001.1| GENE 305 324065 - 324433 330 122 aa, chain - ## HITS:1 COG:lin2987 KEGG:ns NR:ns ## COG: lin2987 COG0594 # Protein_GI_number: 16802045 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Listeria innocua # 1 114 1 113 119 96 46.0 1e-20 MKKSYRVKSEKDFQTVFNKGDSVANRAFVVYKLIRPENKHFRVGISVGKKVGHTAVVRNR LKRYIRATLTEVKDEVDVKADFLVITRPYARKFTMAEVKKNLIHAMTLAKLINQDSEENE GI >gi|297149550|gb|ACGQ02000001.1| GENE 306 324487 - 324627 234 46 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525161|ref|ZP_03955210.1| 50S ribosomal protein L34 [Lactobacillus jensenii JV-V16] # 1 46 1 46 46 94 100 7e-18 MTTKRTYQPKKRHRQRVHGFMKRMSTSNGRKVLARRRAKGRKVLSA >gi|297149550|gb|ACGQ02000001.1| GENE 307 325135 - 326460 1398 441 aa, chain + ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 439 15 447 449 407 49.0 1e-113 MRQEYNEVAYNAWFKNTKPVSYNKETNELVIAVKNPIAKGYWEANLSTKLIQTAYAYGNF EVLPIFEVDGDEPTERFKAPQPPKKVPERSVSPVKDDFVAKNLQLNEKYTFDTFVQGEGN KLAEGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQMLCERPNAKVVYIQSETFV NDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMT SDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRKKAESEGLVIDDDTLDYIAS QVSTNIRELEGALVKVQAHATIEKADINVNLARDALTDLKLVQKSRGLQISKIQEVVANY FQTTVNELKGKKRVRQIVVPRQIAMYLSRDLTDASLPKIGQEFGGKDHTTVMHAYEKIEK DIRTDAEIKSAVYELKQLLDR >gi|297149550|gb|ACGQ02000001.1| GENE 308 326626 - 327756 1362 376 aa, chain + ## HITS:1 COG:SA0002 KEGG:ns NR:ns ## COG: SA0002 COG0592 # Protein_GI_number: 15925707 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Staphylococcus aureus N315 # 1 376 2 377 377 317 46.0 2e-86 MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEELVLTGSDTDISIEIKIPVS ADLTVESTGSIVLPARFFNEIIKKLPGKDFSFEVKEGLQTQISSENSEFTINGLDANNYP RLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVFNQAKIKAVATDSHRL SQRIIDLENGPQVEADLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNVSFYSRL LEGTYPDTDRLLPTTSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTENGVAQLE GDSPEIGTVEEKPWAKQITGQNLEISFNPDYLQAALRASITDTVIMNFTEPLRPFTVVPG KEDVEFIQLITPVRTY >gi|297149550|gb|ACGQ02000001.1| GENE 309 327974 - 328189 114 71 aa, chain + ## HITS:1 COG:BS_yaaA KEGG:ns NR:ns ## COG: BS_yaaA COG2501 # Protein_GI_number: 16077071 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 9 65 7 63 71 67 56.0 5e-12 MSKIKIFKIKGEFITLGQFLKEETYVGSGGQAKWFLAESPVILNGQEENRRGKKIHVGDE VEVQGQIYKFE >gi|297149550|gb|ACGQ02000001.1| GENE 310 328192 - 329316 1017 374 aa, chain + ## HITS:1 COG:BS_recF KEGG:ns NR:ns ## COG: BS_recF COG1195 # Protein_GI_number: 16077072 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Bacillus subtilis # 1 369 1 368 370 331 48.0 1e-90 MYLKQLKLQNWRNFEELETDFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKEL IRFGQKAAILSGHVVKSQVETDLQVRINTKGKKAWINRIEQSKLSRYVGQLNAILFSPED LALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDKVFLEV LSDQLAGLAAEIISRRLKYLAYLSEYAKEAYAAISNEKERLEVVYNPSVTLTSGQTSSES IYHEVLACFKKNEAGEIRTGTTLAGPHRDDLQFLLDKKDAHLYASQGQQRTIALSLKLAE IQLIHQITGEYPTLLLDDVMSELDHTRQSALLNYIHGKTQTFITTTDLEGISWEIVKTPK IFRLKAGVISEGDD >gi|297149550|gb|ACGQ02000001.1| GENE 311 329319 - 331274 2302 651 aa, chain + ## HITS:1 COG:lin0006 KEGG:ns NR:ns ## COG: lin0006 COG0187 # Protein_GI_number: 16799085 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 1 650 1 645 646 824 67.0 0 MADDKMKDVKEYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNG IDECLAGFATKIEVTVEEDGSVTVQDDGRGIPVDIQEKTGRPAVETVYTVLHAGGKFGGG GYKVSGGLHGVGASVVNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKQIGTVDPGQHGT IVHFYPDPDIFTETIVFDDKILKKRIQELAFLNKGLKLTFTDKRKSSAETDVYHYEGGIK EYVAFLDKKEEKLFDTPVYVEGDYDGINVEVALQYTTGYKTTMMTFANNIHTYEGGMHEA GFKTALTRVINDYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNS DARAAVDKAFSEAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANL PGKLADNTSNDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILA NQEIRTLFTALGTGFGADFDVKKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKA GYVYIARPPLYQVKQGKIIKYLDSDEELHDYLGSLQPSPKPTVQRYKGLGEMSADQLWET TMDPENRRLDRVDPAYAEDADAVFEMLMGNEVGPRRDFITKNAKYVENLDA >gi|297149550|gb|ACGQ02000001.1| GENE 312 331286 - 333763 3199 825 aa, chain + ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 6 819 2 819 822 1010 62.0 0 MDNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVT PDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPA AMRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGM TTNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKG NVVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRH GMRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQE DVVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSESSDIAKATLISRFELDDK QAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADYKDILAKPERIDHIIYTELLDIQKRF GDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNGYIKRMPVSEFRTQNRGGRGIKGMGV QDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIPEYSRTAKGLPIINLLQLDKGEKIQ AMINVPEGHEDGNLFFITKMGVVKRTSVEEFSNIRNSGLIALTLRDGDELSNVLTTDGKQ NIIIGTHMGYAASFKESDVRVMGRSAAGVRGINLRENDYVVGSEVLKPGAEVLVISENGY GKRTAVSEYPIKGRGGKGILTTKLGKKNGPLAGMTVVDGTTDIMLITTDGIMIRFKTEDV SQTGRATMGVRLIKLGEGDSVASLTAVPNEDDDTEDQDENSKSEE >gi|297149550|gb|ACGQ02000001.1| GENE 313 333968 - 334261 500 97 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227525168|ref|ZP_03955217.1| ribosomal protein S6 [Lactobacillus jensenii JV-V16] # 1 97 1 97 97 197 100 1e-48 MTTKYEVTYIIKPDIDDEAKKAVVDKYDKVIADNGATMVESKDWGKRRFAYEINKYREGT YHIMTFTAEDAKAVDEFGRLSRIDNQVLRSMTVKLDK >gi|297149550|gb|ACGQ02000001.1| GENE 314 334298 - 334813 840 171 aa, chain + ## HITS:1 COG:BH4049 KEGG:ns NR:ns ## COG: BH4049 COG0629 # Protein_GI_number: 15616611 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Bacillus halodurans # 1 171 1 168 168 160 53.0 1e-39 MINRVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYANAQGERGADFISCVIWRKAAEN FCNFTNKGSLVGIDGRIQTRSYDNKDGQRVYVTEVIVDNFSLLESRKDREARSQNGGYAP QNNGSSYAGNSNQNTNFQANNSAPNTNNAAPQDPFADSGSTIDISDDDLPF >gi|297149550|gb|ACGQ02000001.1| GENE 315 334837 - 335073 396 78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227525170|ref|ZP_03955219.1| 30S ribosomal protein S18 [Lactobacillus jensenii JV-V16] # 1 78 1 78 78 157 100 1e-36 MPQQRRGGRRHRKVDFIAANHIDYVDYKDVDLLKRFISERGKILPRRVTGTSAKNQRKLT IAIKRARIMGLLPFVAED >gi|297149550|gb|ACGQ02000001.1| GENE 316 335206 - 337224 751 672 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|194246575|ref|YP_002004214.1| 50S ribosomal protein L9 [Candidatus Phytoplasma mali] # 48 665 62 679 837 293 29 2e-93 MKDFFRKLELPEFIKDSRLSSSVLIVIFLSLFSAVVGVMISPFFGLAMVLIFVLIVAFTV YGAYILAGNASNFAANLSYRIKRSEQEAMIKMPLGILLYDSDHHIQWVNPYLQMYLEDED VLGRSISSVDPELGKIFETILSNKKTSQNQLVKWGSRQFEMIVQDNLGVIYLLDITRYAQ IEEKYEAERLAIGLIFIDNYDELSQGMHDQELALMSSYVQNTLSEYAAKFHAYLKRIDED HFLLLTHMQDLKKLEGDKFSVLDKVRLETSRNNTPLTLSIGLAYGSDSLNEVADQAQSNL DLALGRGGDQVVLREPGKEARFFGGKSNPMEKRTRVRARMVSQALQEIFKDADQIFVVGH QRPDMDAIGGGIGIVKIARAHGVKAHVVLDTNHTNYDVGRLVARLEKEKDLDLFISPEDA LAQATDQSLLVMADHSKYSITYDAKLYDKLKNRLVIIDHHRRGEEFPENPMLIYIEPYAS STCELVTEMIEYQPQRGEQLLTDLEATAMLAGITVDSKEFSLRTGTRTFDAASYLRSIGA DSAIVSDLLKEDIESFTQKAKLVASLKMYKDDIALLLGPDDKIIDPIVTAQAADMALSLE HVDASFAVTRRKKDTIGISARSMGDINVQVIMEKLGGGGHLSNAATQLKDITIDEAKEKL EKAIEDYLEENE >gi|297149550|gb|ACGQ02000001.1| GENE 317 337244 - 337696 749 150 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227525172|ref|ZP_03955221.1| 50S ribosomal protein L9 [Lactobacillus jensenii JV-V16] # 1 150 1 150 150 293 100 1e-77 MKVIFVQDVRGRGKRGEVKNVPDGYAQNYLIKRGLAKEANKGNLNTLKRVEANEKAAYEA EKADAIKIKKQLESDNTVVQFKSKAGTDGRLFGSISGKKIVEGLEQQFGLKIDKRKLELP EPVKALGYTNVKVKLFKGVESTIRVHITEE >gi|297149550|gb|ACGQ02000001.1| GENE 318 337712 - 339079 1844 455 aa, chain + ## HITS:1 COG:SP2203 KEGG:ns NR:ns ## COG: SP2203 COG0305 # Protein_GI_number: 15902010 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Streptococcus pneumoniae TIGR4 # 10 449 11 445 450 459 57.0 1e-129 MDNVVSPQIPHDSEAEKAVLGAIFIDPEAIADAEAIVTADDFYERANRILFAAMKDLVDR DEAIDPLTIRDELAKRKQLEDIGGIAYISDVAVATPTSAHVTYYAQIVHRKSQLRRLIAA SQKIIQNAMEGSDDVANILDDAEKQIMDVSSDTNSAGFRNIKEVVQKALDEINAATAADT DVTGLSTGFVNLDKMTTGLHEDELIILAARPGVGKTSFAMNVAQYAGLHDHKTVAVFSLE MSGEQLVQRMLASEGLIDSMHLRTGQLNNEEWNKLVVAAGALATASIFIDDTPGIKMSEI RAKARKLAKEDGNLGLIVIDYLQLIEGPKSESRQQEVSAISRQLKKLAKELHVPVIALSQ LSRSVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRDEEGSEDNDQQGDDDNGEV EVIIEKNRSGSRGTVKLMFSKPYNRFSNLDYAHDE >gi|297149550|gb|ACGQ02000001.1| GENE 319 339112 - 340260 1129 382 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00021 NR:ns ## KEGG: LCRIS_00021 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 379 1 382 409 426 52.0 1e-118 MAGPLDYLRWRGDLSFKQRQYNSVDGAILASIAYLPFDESIVGHSLKEACERILALYSGS LDLHRKTETRLLVKSPRFADLKILDWTSRLEAEPAPLQFAALTLQLDKNTILISFRGTDS SVVGWNEDMIMNYSYQIYGQTVARDYLEAMADKFKNCKIYITGHSKGGHYAIHSLAAARY DVQDRVINALNFDGPGYRSVFAESAGFKRAIDKMRTYVPESSVFGIMLDHPERTLVVKSV YPMMHQHTPLNWSVGRNSFVLAEGLTTSARIIRHALIQFNQSIPAEKRGQLWSAIFLAFE NMDITDMNVFTEHRIRGTWTLGKVVMGMDPEVRQVATEMIKLIYQSAKNNYLPFSEGDFS ACPKSNDSSKAPIFFESYNFKD >gi|297149550|gb|ACGQ02000001.1| GENE 320 340353 - 341060 850 235 aa, chain - ## HITS:1 COG:CAC3658 KEGG:ns NR:ns ## COG: CAC3658 COG1285 # Protein_GI_number: 15896891 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Clostridium acetobutylicum # 9 228 4 227 229 174 40.0 1e-43 MTILAIAGFTTQVEWLIRIIVAALCGAVIGYERAIQRKSAGVRTHIVVAVASALFMIVSK YGFYDLLTTNEIALDPSRIAAQIVTGISFIGAGTILVRREQISGLTTAAGVWATSAIGMA VGSGLYTIGVLATIFIFFIQMLFHDDSIISRIIIHVRFNVQIVCVNTPNILNEIQNELEN NHVESIAIKILDVDDEQIVFNADGIINNKIDENNIIMHLRKYPDIKRIIYTRGGK >gi|297149550|gb|ACGQ02000001.1| GENE 321 341669 - 342814 1176 381 aa, chain + ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 380 1 378 378 273 41.0 3e-73 MNKQERIQVLTDLIKINSINGNELEVATYLKALFAKHNIEAAIDAFGDKRANLIMELNPQ ASGPILGLTGHMDTVDLVNEAKWQSNPFEPKLDGDKLYGRGSADMKSGLAAEVIALIELV ESGRIKGHVRFLATAGEEYGTPGANRLEEQSYAADLAALIVGEPTGGDIVYAHSGSLNYR IKSHGQAVHSSRPEEGKNAITGLVKFYVAEQELFNNAPKDPYLGEIKHSITVIEGGKQVN IIPAEAKLEGNIRPTKAFSNEEVIKSLKALVSKLNQAEATHLEFELIHNFYPVVTSPDDA FVKKGLAATTDAFANLRKPKLRIINGATDASVFVKRRPDLPVFILGPDKWKLAHQINEYT TISSYLAVIEAYKNIILNFFE >gi|297149550|gb|ACGQ02000001.1| GENE 322 342944 - 344095 967 383 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297205298|ref|ZP_06922694.1| ## NR: gi|297205298|ref|ZP_06922694.1| TerC family integral membrane protein [Lactobacillus jensenii JV-V16] # 1 383 1 383 383 670 100.0 0 MIVGIVLLVVSGLLSSLFYSKKKYIWFLLCLIFALCCFLGFTADITNILLFQVIMGVTTL GALGIFAYLVLLNKKGKKPRYNKTIFAITILALLFAVMGISSPKDFMLHTDEVIAKDKGN HTNSKYFEVLTSKDNWDTENKMFSIDTNSKGKVSLKLKGLRDCTVTIKNSPDFDKDTDQS VKTRKIELRAGETKTLSFAMKNSDYVEIELVIVDPDGKKTYVEFNNEMEDNSSDSDSDTD SDSDTNDSDDKDSDDDNTLGKQLIKHLVKEESNGFYYEDKTDSRIRYFVDSDNKITAIKV VLRDGGNFVTVQGYLSERILHDEHLKYGNDKEDENGTILDNDGKYNVYSPKNKKWYHISL QAGNGENAVSEFSAWPGKSSDAK >gi|297149550|gb|ACGQ02000001.1| GENE 323 344443 - 345882 1884 479 aa, chain + ## HITS:1 COG:SP0303 KEGG:ns NR:ns ## COG: SP0303 COG2723 # Protein_GI_number: 15900236 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 4 479 2 478 478 652 67.0 0 MFETKMPNGFLWGGAVAAHQLEGAWNIDGKGPSVADVMTVGSTEKDREFTGKVLPGENYP NHEAIDFYHHYKEDIKLFAEMGFKCFRTSIAWTRIFPNGDEDEPNEAGLKFYDDLFDECH KYGIEPVITLHHFEIPLHLVNEYGGWENRKLIDFFTRFARVCFKHYKNKVKYWMTFNEID NQAAFNNQFLMCTNSGIVFKDGQNREAAMYQAAHYELVASALAVKIGHEINPDFKIGCMI NYASVYPATCKPSDCLLAQRVADRRYWFSDVHVNGEYPEEIEMYLKRKGYRQDITEEDRQ ILREGTVDYIGFSYYASMTVGSGKVDADSVTDLDAAKVHNEYLPTTAWHWEIDPEGLRYG LNWLTDRYHKPLFIVENGMGAYDKVEADGSIHDEYRIDYLRKHISEMEKAVALDGVNLMG YTPWGCIDLVSAGTGQMDKRYGFIYVDKNDKGEGTLARSRKDSFFWYQKVIRSNGAEIE >gi|297149550|gb|ACGQ02000001.1| GENE 324 345941 - 346522 441 193 aa, chain + ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 184 1 183 199 134 39.0 7e-32 MARTIYFVRHGETLFNTQHRAQGRVDSPLTDLGIRQAKAVKKFFEDKNIRLNAAFSSTQE RACDTLELIVGHNFPYKRLKDLRERSYGVFEARADDLLPWGHGLGHDKVDPTIETYDSML KRMNSALKTIFEETKDDDTILVSSHGNFLAVFTRSLLGGEDLKGMGNCCVVEVKEENKRL QLINIYEPAANVK >gi|297149550|gb|ACGQ02000001.1| GENE 325 346593 - 347069 417 158 aa, chain + ## HITS:1 COG:no KEGG:LEGAS_0620 NR:ns ## KEGG: LEGAS_0620 # Name: not_defined # Def: putative sugar transporter # Organism: L.gasicomitatum # Pathway: not_defined # 5 154 25 173 184 77 32.0 1e-13 MAKAESKKEFKEKSLYYNRYFSLRYLTAGYFFVNFWWLIVLAMGGSEVVLLPLALLLLCI PAIWEQKKKFDQGEDNELPQTKHYYLFQVVINILLGICYFTPAFSFFYPFVDSAAFSFLF MLLLLGLAIGIWSLHHISQIERNEDKFFRRYEAYARQK >gi|297149550|gb|ACGQ02000001.1| GENE 326 347053 - 347901 1006 282 aa, chain + ## HITS:1 COG:Cgl2568 KEGG:ns NR:ns ## COG: Cgl2568 COG0561 # Protein_GI_number: 19553818 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Corynebacterium glutamicum # 8 282 3 269 271 225 44.0 7e-59 MLDKSDKKVVFLDIDGTLCDYNGVIPRSAKQAVRLARKNGHLIFLNTGRSKAEMDDDLLN IGFDGMICGNGNYVEVEQKVILHQPLPENIEAKIVKWLGEQHSEFFLESNNGLFASEHFK EQGLPVVRAYVQGEGQEDVSHVTVETAFPAMQYGKQLIRDDVNKISFILTKQVQPEIVKS QFPHLEFGTWGGKDEQPLFGDLRPKGISKANAIKKLLQYLNMSLTDTIAFGDAQVDIPMF ELCKVGVCMGNGGQKAQEQADLVTDSVMDDGLQHAFEKLSLI >gi|297149550|gb|ACGQ02000001.1| GENE 327 348063 - 348782 665 239 aa, chain - ## HITS:1 COG:BS_yydK KEGG:ns NR:ns ## COG: BS_yydK COG2188 # Protein_GI_number: 16081065 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 19 225 25 220 236 102 30.0 5e-22 MEIARNISEKIFYKDFKKQLPSENELMAQYQVSRNTIRNAIAILANHGIVKRVQGSGYFI NQQLINNNELMLMASKDGIHPTRPQSYEDKNTILKKLKTKILSFKTLKANELTAEALGCE LGTDLYYIERLRYFNDELFCLEKTYYLKKIVPYLDEKICQSSIFEFIQKQFNIEVNDADE FIKMTYTDKKDSEKLNIPAKTPNIQITEINYLRNNIAFNYSVINYFNSDISFYNHVTCL >gi|297149550|gb|ACGQ02000001.1| GENE 328 348941 - 349258 588 105 aa, chain + ## HITS:1 COG:SPy1324 KEGG:ns NR:ns ## COG: SPy1324 COG1440 # Protein_GI_number: 15675267 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 4 105 2 102 103 90 50.0 6e-19 MAEKTIMLCCAAGMSTSMLVARMQDAAKADGEDVEIFACPAAEADDKLAQENVSAILLGP QVRYMLDSFKQKVSDKNIPVDVIDMQAYGMMDGEKVLKQGLSLIK >gi|297149550|gb|ACGQ02000001.1| GENE 329 349271 - 349657 645 128 aa, chain + ## HITS:1 COG:lin1830 KEGG:ns NR:ns ## COG: lin1830 COG1447 # Protein_GI_number: 16800897 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 28 121 5 98 100 86 57.0 1e-17 MDKDPKQVADLVNDAAKKEKEANELSMQQTMMLIMNAGNAKAFAKEAIDAAKKGDFDKAE AKIKAANEALVDAHNTQTGMLTEEARGNHAKLTLLVVHAQDHLMTAITYIDLAQELVDVY KQMAELKK >gi|297149550|gb|ACGQ02000001.1| GENE 330 349684 - 351045 1660 453 aa, chain + ## HITS:1 COG:SP0310 KEGG:ns NR:ns ## COG: SP0310 COG1455 # Protein_GI_number: 15900243 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 2 446 3 447 448 446 54.0 1e-125 MENNKIIKFMNEHLLGPMGKMANFRFVRAIMAAGLASIPFTIVGSMMLVLNVIPMAFPQL QGIWNASFVHFTPLYMTINYASMGALALYFNIVLGYEYTKIIATEEKLNMTPMNGALLSM FAFFMTLPELVVKNGTVEVISKAVKDGAGTVSGFSVTSSGLNRLGTAGIFVGIIMAVLAV KLYQLAVKHNWVIKMPPQVPTGVANAFTALIPAFLVGFVVVIIEGLLVFVGTDIFNVIAL PFSFVTNLTNTWLGILVIVFLVHFLWVMGIHGANIIGAFYTPIALANFAANYKGAHYVFA GEFMNMFVIIGGSGATLGIVIWMAFRARSAQLKVLSRTAIVPAFFNINEPIVFGCPIVYN PILMFPFILAPMVTATTSYWAIKLGLVGKVIAQMPWPSPLGIGAFIGTGGDWKAAVLAVI NVFLAFLVWYPFMKMYDNKLLAQEKANQTSEQK >gi|297149550|gb|ACGQ02000001.1| GENE 331 351182 - 351511 457 109 aa, chain + ## HITS:1 COG:BH0406 KEGG:ns NR:ns ## COG: BH0406 COG1695 # Protein_GI_number: 15612969 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 5 106 68 168 174 97 48.0 4e-21 MQRDISSQILKGILQGVMLTILEKNVEYGYSLSKKLDDYGLTNVPKGTIYPLLASMEKKK LIEGRMQESPDGPARKYYYLTPAGQQAKLEFQQEWQQLEEVVNKVLGGE >gi|297149550|gb|ACGQ02000001.1| GENE 332 351513 - 351929 546 138 aa, chain + ## HITS:1 COG:no KEGG:LCABL_20950 NR:ns ## KEGG: LCABL_20950 # Name: ORF00048 # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 5 124 10 134 279 69 31.0 5e-11 MLYNRVISETKDKQEKLSFRNREFFRKFVTYTSYIAKNKDQDILEKRMLEILDDIIAAQE DGLDADEYFGKDPEKIAQEIVEITPRKGFLTSNGIYGAVAMVFLIHGFQFSNLDVGNAII LAVLGYWLTIYGNTRGAS >gi|297149550|gb|ACGQ02000001.1| GENE 333 352306 - 352866 151 186 aa, chain + ## HITS:1 COG:no KEGG:lhv_1083 NR:ns ## KEGG: lhv_1083 # Name: not_defined # Def: putative transposase # Organism: L.helveticus # Pathway: not_defined # 1 186 100 285 285 368 96.0 1e-101 MNKKVDLNGHFLIIDSFPVPVCQPIRNYRAKIFRGYANIGYKATKKIYFYGFKVHAIVSD DGYILDYVVTKASVHDAKETVELLENAHPSNYYLLGDEGYLGKELHQQLKQMGYELWTPY RKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAY CLERFN >gi|297149550|gb|ACGQ02000001.1| GENE 334 352900 - 353118 93 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851692|ref|ZP_05557080.1| ## NR: gi|256851692|ref|ZP_05557080.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 72 139 210 210 135 100.0 1e-30 MIYNKKGVELARNDLKLAGLLLAFIVVIAVGVLVKTPFIIAKNDWINWLFNGILCMLLIW NVWRSLYIKKKK >gi|297149550|gb|ACGQ02000001.1| GENE 335 353135 - 353533 522 132 aa, chain - ## HITS:1 COG:RSp1645 KEGG:ns NR:ns ## COG: RSp1645 COG1942 # Protein_GI_number: 17549864 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Ralstonia solanacearum # 1 128 1 127 140 106 40.0 1e-23 MPYLRVKLACQKSNQNIKQIVAKELTHLAVTKLKKDPNAATVDIKLCEPEDWFIAGKPIS QTNLNSFYLEIKITSGTNTREEKSQFVQASFAKMQELIGPLATTSYIVIQDVASDSWGFG GKTQEWRYITNK >gi|297149550|gb|ACGQ02000001.1| GENE 336 353636 - 354376 560 246 aa, chain + ## HITS:1 COG:BS_yofA KEGG:ns NR:ns ## COG: BS_yofA COG0583 # Protein_GI_number: 16078903 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 215 1 233 285 69 27.0 5e-12 MQLHDFETFIYLYETRSINLTAKITGYAQSNITARLKKIEEEYRLLLFQRTYQGLVPTEA GTEFYKYAKKVIDLTDDFLKTVTKTSKSQNIVMPKLLFDWLIVEHNDYDIVKDNITVLTS SQITEIEKPKYDTIITYASFSHEDYHQVGVGYLIADFYTNSLSKDIPIIVNSDHNCPFRI RTLKIIKNKKIIELASWDNIIELVKKGKGIALLPKYIGEREKLICLSDKREVRIPYKKYS RNQCSM >gi|297149550|gb|ACGQ02000001.1| GENE 337 354456 - 355262 677 268 aa, chain + ## HITS:1 COG:no KEGG:lhv_0044 NR:ns ## KEGG: lhv_0044 # Name: not_defined # Def: putative esterase # Organism: L.helveticus # Pathway: not_defined # 1 189 1 188 190 188 50.0 2e-46 MKVLLTGDSIVARYEGLKEPHINAYLKENFSDIEILNTAVPGINSRYLLAHVDELILKQE KADYLVILIGTNDCAFHKKIEEEEFWTNLNKVAKKILTKYDAKQVILVSPPAVDEEKQRV RDNETVEKYANWVQRVANDYGMHYLNLFHEMETDEHELEEICHGLRNDGLHFGKIGYQIF GDALIDEIRPKKWHQKIINKSQTATYTVTKLPLRILICNIRDCLYIVIKRMELIEERILD NPNWGLSLNKIIILGVLGLLWLFISTFR >gi|297149550|gb|ACGQ02000001.1| GENE 338 355502 - 356644 1155 380 aa, chain + ## HITS:1 COG:HP0106 KEGG:ns NR:ns ## COG: HP0106 COG0626 # Protein_GI_number: 15644736 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Helicobacter pylori 26695 # 1 379 1 379 380 455 58.0 1e-128 MKFDSKLIHGGINEDEETGAVSMPIYRASTYHKPFLSSKLKWEYSRSGNPTRAALESLMA DLEDGNSAFAFSSGSAAIHAVFSLLSAGDEVIIGKDVYGGTFRLANQVMKRFGLNFTVVD TRNLDEVSAAINSNVKAIYLETPTNPLLEISDLAAIAEIAQKHDVLMIVDNTFASPYNQK PLDLGADIVVHSGTKYLGGHSDLVAGIAVAKNEKIAEQLAFLQNSIGAVLSPDDSWLLMR GIKTLGARMRVHEDNAQAVVKYLLDSKYVKKVMYPGLETNPSFSIAKKQMKGFGAMISFE LADQYRAEEFVNRLHMISLAESLGGIESLIEVPAVMTHGSIPREIRLKNGISDGLIRLSV GIEDKEDILADLDQAFKTLD >gi|297149550|gb|ACGQ02000001.1| GENE 339 356713 - 357540 1011 275 aa, chain + ## HITS:1 COG:SP1845 KEGG:ns NR:ns ## COG: SP1845 COG0708 # Protein_GI_number: 15901674 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pneumoniae TIGR4 # 1 275 1 275 275 405 71.0 1e-113 MLLISWNIDSLNAALTSDSARAQKTRHVLTQIAEKKPDILAIQETKLRATGPTKKHAEIL AKLFPDYEYVWRSSEEPARKGYAGTMYLYKNTLEPVVTYPTIGAPDTMDFEGRIITLEFP EYFVTQVYTPNAGGELKRLGDRQGWDKKYIEYLQKLDKEKPVLASGDYNVAHEEIDLKHP ENNHHSAGFTDEERADFTELLSTGFTDSFRKIHGNIPEVYSWWAQRIKTAKANNSGWRID YWLTSNRIADKIKKSEMMDTGERADHCPIVLEIDL >gi|297149550|gb|ACGQ02000001.1| GENE 340 357587 - 360397 2249 936 aa, chain + ## HITS:1 COG:Cgl1126_2 KEGG:ns NR:ns ## COG: Cgl1126_2 COG1061 # Protein_GI_number: 19552376 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Corynebacterium glutamicum # 200 933 30 783 789 538 39.0 1e-152 MDKVLKDAVLNGLYNSNYPGQVNLTPQLLSNSDEKIWLSLRQELLSAKSFIWAVAFISED MLVPFKQVLEDTEIQGTIITGSYLQFNSPKVFYELLKIPNLTVKISTKAGFHAKGYLFKY ENYQTAIIGSANFTRSAMLANSEWCLKVSSTENASLTEQFKNELYKLNSDSIALSTDWIK AYKKNWIKPKAAKPLIPQEITPNKMQREALDNLFEVINQGQRRALVVSATGTGKTYLAAF AVKQYKPKRFLYLVHRTQIAKKTMASFQKVIGGHKKDYGLLSGNHHDYSAKYLFATVQTL SQDELLKTIDPAEFDFILIDEAHRSAAPSYQKILNYLEPQFCLGLTATPERMDKENIFEI YDYNLAYEIRLKDALQEKMLTPFHYVGVEDYEINGQTIDETSDLAYLTAEKRVDYLLKEI DYYGYCGKKAHGLVFCSRQAEAKELALEFTNRGHKAISLTNQNNETDRQKAVKDLEAGKI EYIITVDLFNEGIDIPCLNQIIMLRNTQSSIVFIQQLGRGLRKYPGKDYVTVIDFIGNYQ NNYLIPLALTDDRSASIDQAKREAQLPSFIGLSTINFSKVASEKILASLEKVKLDGLKQL RNAYHELKNKLGRSPLLYDFYRLGSVSPLVFAQNTSLSSYAEFLEKMGAEILISSFEHKV LSFLTKELLPGKRIHELLFLKLILDYGKVNRDQFESELKKQGAYYNSEVYDSIQKFLMLD FFDVKTGKTTKKVQYGNAPLIEQLNLFDFTFSEPIKKALENADFKRLFTDLIKTAIALNG QYDNQQKFTLYKSYDRKDACHLLNWPLDVSAPMYGYRVGEKDCPIFIIYNKDEEKRSSVY HNTLSDGRSLHWYTRSPRHLDSDEVVRLLSGKINLHLFVKKSDSASREFFYLGEAEIISA QEEKIGPKQKPTVGMELLLQTPLSSAMYQMLFTCEK >gi|297149550|gb|ACGQ02000001.1| GENE 341 360447 - 361304 1045 285 aa, chain + ## HITS:1 COG:L66233 KEGG:ns NR:ns ## COG: L66233 COG0656 # Protein_GI_number: 15672250 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 6 285 3 281 281 319 58.0 3e-87 MAINGLSDTYTLNNGVKIPVVGFGTWQTPDGEVAEKSVLAALNSGYRHIDTAAAYGNEES VGRAIKSSGIKRDELFITTKLWNADHGYERTKKAIDASLMKLGLDYLDLYLIHWPNPVAM RDNWAELNSESWKAMEEAQKAGKIRAIGVSNFRKHHLDALLENADVVPAVNQIYLNPSDL QTDVRKENEKHNILSEAYSPLGTGDLLGNELVNKLAQEHGKSSAQILIRWSLEHGFVPLP KSVHEEYIKANGQVFDFSLSNEEMKLLDGLEGKGNLALDPDKADF >gi|297149550|gb|ACGQ02000001.1| GENE 342 361387 - 362100 834 237 aa, chain + ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 1 214 1 171 345 92 34.0 9e-19 MKRSELKFNAKEKLSNNWAWGALMTLMLMIITYLVSRGIMFLMFGSAGIFGFMMAERALA EDPGFVISLFVSFAGFIYMLSFGISIITGMFNTGVQVGYLHLVDNQKENNVFKNIFLAFR GGRTYNYFVNVLLTSIFTGLWTLLFIIPGIIKSYSYAMTFYILEDMHKAGKEVGVTEAIT KSRQMMKGHKFQLFVLDLSFIGWGILATLALGIGWLWLVPYIQTTKAEFYRKVASEN >gi|297149550|gb|ACGQ02000001.1| GENE 343 362207 - 362524 511 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297205319|ref|ZP_06922715.1| ## NR: gi|297205319|ref|ZP_06922715.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] # 1 105 1 105 105 136 100.0 4e-31 MKNTKFFAGIVMVLMSLYMLFQALTAHLATNAMIAGIIFLVAGIATKDMDNLTGDIAGLV LNLIGWFMTMSIPSISLFGIFALIIAIVLFGLTFMSNSSDSALAK >gi|297149550|gb|ACGQ02000001.1| GENE 344 362620 - 363876 826 418 aa, chain - ## HITS:1 COG:SP0145 KEGG:ns NR:ns ## COG: SP0145 COG0477 # Protein_GI_number: 15900083 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 185 1 185 408 99 33.0 1e-20 MNVFLKNKSYRRFSIVSFLSGTGDILFYMALMTYASKLENYSLALSLIAISESLPKLLDT FSGYLADRTRKKFKNIFLMALIRFILYSLVGILFASKLSDWTLVLIVIVINLISDTFGSY AGGLVVPLIVNLVGEEDFGEAEGFTSGVSQVIGISAQFLGSGLLLFMSYSNLAFLNAFTF LFAGLLYASIGRKQKDDNQLIESQDINREKFLPTLKSSYNQVKKQPGLLTIVLVVALING TLSALQSLIPIVMVAYKKTMIISNYSFTIAIIGIVVSSGFALGSICGPQLFKKTTIFSIV ITAIILSIATTIIAFIANIYIILPAYFILAATASLASIKLSQWLVMAVNQKILASSMGLL NTILTVMAPTMTTIFTTISGSTNFIVSMSILVIVEVIILFIAIKLNLTAREATTSTLE >gi|297149550|gb|ACGQ02000001.1| GENE 345 363980 - 364852 854 290 aa, chain + ## HITS:1 COG:no KEGG:lhv_1911 NR:ns ## KEGG: lhv_1911 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 284 8 289 289 204 40.0 2e-51 MQIGSLLKEYRLSQGKRQKEFVGEVVSQSYYSKVEKNANRITAEDLIDLLNYNNIPLWEF FSRLNHGSRLHKQEIDDLDTVMIEAYYAADKEKLANVINLIDESNLSEKDKQQQKLIARG WLESTKKPDEPNDDELRQKLKEQVFSSPNFNKNNMALYCNFMDFYDLESNIAISKQIIKQ YQSDTDIDVQRVLLSIIANMLILTIENKKPDLAKFFAKVASKISTNPAIFFYKCCIYFFE SANMYQITRDKKYLIKCDNAVTMFKELGMEAYGNGLNEFIKRQLSNYPSL >gi|297149550|gb|ACGQ02000001.1| GENE 346 364837 - 365496 242 219 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 198 1 199 223 97 32 8e-19 MTNAIEITNLTKSFKHKPVFQELNLTVPEKALTVIYGKSGCGKSTLLNIIGLLEQADAGT INLLGEKAPKAGTRKAQSFIKNNINYLFQNYALLNEQSIKKNLELVHLVSRETKADFDER AKKILASLNLEVDLNTNVASLSGGQKQRIALARTLLKPGKLILCDEPTGSLDPENRDYIL LALNKAKNAGKTVLVVTHDPYIIKKSDFSYDLKELYKDG >gi|297149550|gb|ACGQ02000001.1| GENE 347 365489 - 367579 1077 696 aa, chain - ## HITS:1 COG:BH0280 KEGG:ns NR:ns ## COG: BH0280 COG4652 # Protein_GI_number: 15612843 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 177 667 147 687 713 91 22.0 5e-18 MPMFKKSLKFIFILLNMIVASLFLIYSINQYSDTHNLKQFDISADYTPFQLPEPASTTHD YLHQLAVIKKTSQKMQIHFLKRSYFTGYNSGSKFSYNTFKQNVLFESDNLSDSLLSNYFG HHFQSGKVYSTAAKSNSLRLKSYGTIAFTIKEFNYQHAPQSREGIFFIQTTNPNQIEQYL ELLSQNYNHEFASNYSVKDFLAPEMYPASIDLNLDSSNLRTLTLVAILFQLIFFIVYFLT FNYENGVYSLLGYSLFQKVNQLILKSLIWGNLPILLLGIFYEVSKQYYDLIFNSLSVLFG LVTLEYLLALAITFILGKLPTNRFLVKRADNKYLFGFAFLAKVVLVFLVFISAQDLADFA GQNIKTAFSQQTNFYHKYVSFYPLVQGYNETLDQIKQEKYQTKNLYPTLNRAGAIYIDTS PLNSEKPYLLQNVDVNVNYLKLVPVKKLNGKKVILSDQDTNKTILLPQRNLQNTDKIAEF YSSKRHEKVKFIIIKNQQALFNEKGQKINNYQYITVSPLKNVLQKLDLNILTGASADTLK IPLIKNPLATYRHYEKLLAKYNSRDNLPHLIKASDSDLEELKDQAASFYLSDFDLFLSLV TLITVTLSTINLYFSIFGREFAIKQALGRPLREKTYFYWALILLQTSILLGLIIATKMLN LNNLVLFAILTIGDILFSTIAIKSFSKNLVRRFLND >gi|297149550|gb|ACGQ02000001.1| GENE 348 367778 - 368626 593 282 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00111 NR:ns ## KEGG: LCRIS_00111 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 1 282 1 274 274 261 50.0 1e-68 MTIGDALKEVQVELGLTAEEMTAGVISKGTYSKVINNKTRLSSDLLLKILFSHGIDIEVF FNKTKDTYAPKNIIIEEKLSQEFGAAFNNHDLVSATDCLKKIQKQNNNPYLLQRAQIGVA FLSNTIEQLDKNLAQLIVNELNTHENWVSNLQALKLFSNSMLVLSDEKVEVLMKIFFIRL KRMNIKSETMIERYAIICSNYLHWKYDSLKQAKSQEKNKHKRNISKSIKYLTKLDKSPRF LIYKILGNYYKNIFTGDIDSAINIKHHLKELGFTSLTKNWPI >gi|297149550|gb|ACGQ02000001.1| GENE 349 368790 - 368966 82 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLIYQAEVNLDYQHFYYRSFLETLLKLAIFYFIIDKTRVCKPVAMNAPTNGPNIGTHA >gi|297149550|gb|ACGQ02000001.1| GENE 350 368879 - 369598 1179 239 aa, chain - ## HITS:1 COG:lin1131 KEGG:ns NR:ns ## COG: lin1131 COG0580 # Protein_GI_number: 16800200 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 1 235 1 234 234 225 53.0 6e-59 MNSFIGEFVGTMVLLVLGIGIGAGSNLKGSIAKGASWHHITMTWGLAITFAVYVAGSLGS KAHLNPAVTLSFATFGLFPWKDVLPYITAQFLGAFAGAAIIAIHYYPHFKATKNEDEGNH VGIFTTGAAIDNPIFNFLSEVIATFIFVLILLNLGDFTTGLKPLILGLLIMVIGQAFGET TGFALNPARDWGPRFAYTVLPIPNKGNAHWSYAWVPMFGPLVGAFMATGLQTLVLSMMK >gi|297149550|gb|ACGQ02000001.1| GENE 351 369950 - 370951 1549 333 aa, chain - ## HITS:1 COG:SA2346 KEGG:ns NR:ns ## COG: SA2346 COG1052 # Protein_GI_number: 15928138 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 315 1 316 332 221 38.0 2e-57 MTKIFAYAIRKDEEPFLNEWKEAHKDVEVDYTDQLLTPETAKLAKGADGVVVYQQLDYTA ETLQALADAGVTKMSLRNVGVDNIDMDKAKELGFEITNVPVYSPNAIAEHAAIQAARVLR QDKVTDLKMAKRDLRWAPNIGREVRDQVVGVVGTGHIGQVFMKIMEGFGAKVIAFDIFHN PELEKEGYYVDSLDELYKKADVISLHVPDVPANVHMINDDSIKEMKDGVVIVNVSRGPLV DTDAIIRGLDSGKVFGFVMDTYEGEVGVFNEDWKGKEFPDARLADLIDRPNVLVTPHTAF YTTHAVRNMVVKAFDNNYAMVEGKEPETPVKLG >gi|297149550|gb|ACGQ02000001.1| GENE 352 371119 - 371583 665 154 aa, chain - ## HITS:1 COG:L0166 KEGG:ns NR:ns ## COG: L0166 COG0054 # Protein_GI_number: 15672978 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Lactococcus lactis # 2 152 3 153 154 137 47.0 8e-33 MIKQGDFINVHGKVAIVASQFNETVTKNLVDGATATLKKFGIKSEDIDIYWVPGAFEIGF TAKKVLKTNKYTGIMTLGAVIKGETDHYTMIINNVTSAIMQLNLKGQIPITFGMLTTENI EQAMQRAGLKAGNEGSATAQTLLEMMSLNEQITK >gi|297149550|gb|ACGQ02000001.1| GENE 353 371602 - 372777 1228 391 aa, chain - ## HITS:1 COG:BH1556_2 KEGG:ns NR:ns ## COG: BH1556_2 COG0807 # Protein_GI_number: 15614119 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Bacillus halodurans # 209 388 7 192 197 217 57.0 4e-56 MDVKKIQAAIQWMKQGGLVIVADDEDRESEGDIIGLGSKVTPQKINFITQTARGLLCTSI GRSIAERLNLTPMAQNNTDPYGTAFTVSVDYKTTTTGISAFDRATTIKALADSTTKADDF FKPGHTFPLVAKDGGVLERNGHTEASITLARLAGEAEVAYICEVMDADGHMARRPRLKEI AAEYNLPFLTIAELQEYVKNPTSKNNQFVDLPTVYGNFKIKAYVGENLALVKGPIDPNKP VLVRLHSECMTGDVFGSKRCDCGEQLHKAMQKIDHEGGILIYLRQEGRGIGLSNKLKAYA LQDQGRDTYEANKILGFEPDERKYNIAKEILTDLGISKIRLLTNNPDKVTQLTKYGIEVT ERVPLEIPANEINKFYLQTKRDKFHHLIMGK >gi|297149550|gb|ACGQ02000001.1| GENE 354 372780 - 373385 477 201 aa, chain - ## HITS:1 COG:Cgl1558 KEGG:ns NR:ns ## COG: Cgl1558 COG0307 # Protein_GI_number: 19552808 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Corynebacterium glutamicum # 1 192 1 191 211 152 44.0 3e-37 MFSGLVTGDATIATIKKDTQTITMTIKTSTSNLKGLKVGDSIAVNGCCLTVESFTETKFV VTMMPQTFKKTTFKNSKIGDQVNIERSLQVTSRLEGHIVTGHIDDVVSLIKKQQNENAIE LFFKLPDRLTAQVVPQGSIAINGTSLTVMDINKNIFSVGLIPHTQENTNLTQLAVGDQVN VETDILGKYVAKNLILFQGAK >gi|297149550|gb|ACGQ02000001.1| GENE 355 373378 - 374433 1079 351 aa, chain - ## HITS:1 COG:L0163_1 KEGG:ns NR:ns ## COG: L0163_1 COG0117 # Protein_GI_number: 15672975 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine deaminase # Organism: Lactococcus lactis # 1 144 1 142 142 145 51.0 1e-34 MNKDEQFMALAINSASKGRYHTWTNPMVGAVVVKDGKVLATGYHHKYGDVHAERDAISKL TPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHGLVTGKGIKKLRSH NISVTTGVLTQEAKKLNKHYNFFYEHKMPYICLKQALSLDHKCSYPDKRIQITGKAAYEQ VHRERADYQAIMIGSSTALIDNPTLLTSVKQDHPPIRIVLDRRGRLLNKNLALFSDKHAQ TWLFTQNTKLTKFPYPPHIKVFLLHSGSLREVLQLLTQNNVQSIYVEGGPTLMKTFIEEK LAQELITYFSPTFLGNNALDGFEITENINLIKPDYQVLDKDIRISGRIDYV >gi|297149550|gb|ACGQ02000001.1| GENE 356 374828 - 376207 1770 459 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 7 455 1 448 449 311 42.0 2e-84 MDELKKVERKLTKKDYFVVSSMLFALFFGAGNLIFPLHLGQLAGHNWFIATLGFLITGVV LPLLSIMAIALTRSEGVYDIGLPLGAGFAVTFMALIHATIGPFFGTPRTATVSFTVGIAP FVGKGNEQLALLIYSALFFGTACWISYNEKDILNRLGKVLNPIFLLLLFLVFLVAMINPL GSASAGHATSAYSNTGSAFLNGFLEGYNTMDALAGLAFGITVVTAIKQLGKKEDRSVAVV TARSGILGMGAVAVIYFFLILIGAMSLGKFTLSADGGVAFSQIVQHYAGSVGQAILATLM TITCLTTAVGLVAAFGQDFHKHFPRFSYRFWLFMSSFASFLIANVGLNEIIAWSTPFLMF LYPLSMVLIVLSVMAPIINKDSTVYFFTVLFTVPPALLDFINALPDIARNQAWAQALLKV RSILPLSDVGMSWLLPALIGLMIGLVLFFVKKKQVSKQA >gi|297149550|gb|ACGQ02000001.1| GENE 357 376259 - 377182 792 307 aa, chain - ## HITS:1 COG:BS_yybE KEGG:ns NR:ns ## COG: BS_yybE COG0583 # Protein_GI_number: 16081119 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 21 248 5 225 278 99 30.0 1e-20 MNDPETVLHYLDVLLKESNFTKAARELYISQPYLTQTLKRIEKKLGVQILNRNIPFSLTE AGTKYYKYLEKSVSRKNKLEQDLLKYSHPDREIIKITVLESLGTFLLPTLLPSFLKENSN ISIQIIECSPRRSENLLLSEEVDCYLGQTPKSLSKGILPYLNGSETYYVVIPQSSPYFTP GKFILPQDSLSLKELLKEPLILSTGGSAIRHQVNGLLQKYKITPNIILESKSVLTATGLS INGLGITISSASILKRYNQVPINLLPLESNLISINYFLAVKANRKLTPGLKKLISHFNKL NLNEDIK >gi|297149550|gb|ACGQ02000001.1| GENE 358 377315 - 379162 2272 615 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 68 611 1 477 484 221 33.0 3e-57 MKAGKYKVRAKGHGASFMPMEVTLSDNKIEKIEVDAQGETKGVADEVFHRLPEEIVKNQT LNVDAVSGATISSHGVIDGISQAIDEAGGDSNEWKKRPKPSNHKQADSELTADVLIIGAG GAGLSAAARAIELGKKVIILEKYPQIGGNTARAGGPMNAAEPDWQKNFECLPGEKETLKQ LIEMPISEIDEEYQADFKKLQKQIQKYLDSDANYLFDSVLLHEIQTYLGGKRVDLKGHEI HGKYELVTTLVNNVLDSVKWLEKLGVKFDKDNVTMPVGALWRRGHKPVEPMGYAFIHVLG DWVKAHGGKILTETKAEKLLISDGRVKGAIAKRSDSSQVTVHAKATMLTAGGFGANTQMC QKYNTYWKEIADDIATTNSPAITGDGIKLGLAAGAGLVGMGFIQLMPVSDPVTGELFTGL QTPPENYIMVNQKGERFVNEYAERDTLASAAIAQGGLFYLIADDKIKETAYNTSQEAIDA QVKAGTLYKTNTLEELAKETGMNPTTLVNSIKKYNSYVEQGHDPEFGKSVFNLKCEKAPF YATPRKPAIHHTMGGLVIDTKAHVLNDDNKIIQGLYSAGENAGGLHAGNRLGGNSLADIF TFGRIAAETIADEIK >gi|297149550|gb|ACGQ02000001.1| GENE 359 379208 - 379438 410 76 aa, chain - ## HITS:1 COG:CAP0144 KEGG:ns NR:ns ## COG: CAP0144 COG4892 # Protein_GI_number: 15004847 # Func_class: R General function prediction only # Function: Predicted heme/steroid binding protein # Organism: Clostridium acetobutylicum # 2 74 64 137 143 72 47.0 1e-13 MKEFTREELAKFDGQNGNKAYVAVNGVVYDVTGNSHWTNGQHHGVLAGKDVTEALSHSPH GDSVLAGLEKVGTLKD >gi|297149550|gb|ACGQ02000001.1| GENE 360 379737 - 380936 774 399 aa, chain - ## HITS:1 COG:no KEGG:LJ0777 NR:ns ## KEGG: LJ0777 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 397 1 410 410 90 27.0 1e-16 MKTLNSSLHPVILFQTIISLLVEFIFIFPTANRQFKTLNLFNISLSIVLLIALVLAILSK RLHFLSWSNTVVIIIFPAFNLFLIPIFFRTMNGFLKLGIFSELVFILSLFLINIPLFKLE LDTLETPVIRFLFIFVFYTAARYSPLYYPTYLPKILNQFLDTYFWFSIFILFSWVLIFNA WSNTWKFNIKVLPNNNYQIWAVIILVFYMIWFSFFDQFINLGTSWSEIFGSWSYPISQLH FSWYNLMYALFTGILEESFRWANLQILLPYFQNKFLPILGPILISAFFFGIYHYTLSYTL NLNSILYVIDAFVMGLVLAGIYLYTGKLYITILFHAAIDLVGFNLGSLVNYNLGLLDYPQ QLVLIILINMIFFIFLFTGKRRKGIAINVSKLIKKSNLT >gi|297149550|gb|ACGQ02000001.1| GENE 361 381190 - 382404 984 404 aa, chain - ## HITS:1 COG:CAC0682 KEGG:ns NR:ns ## COG: CAC0682 COG0004 # Protein_GI_number: 15893970 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Clostridium acetobutylicum # 1 399 1 399 405 285 44.0 2e-76 MNEVDTSFIIFSSILVLFMTPGLAFFYGGLVSKKNVVNTMVSVFFITGLAILLWLICGYS LAFSGNIWGIIGNGQHFFFQNLNFEKTTTGGIPVGLYSLFQMMFAIITPALFIGAVVGRI NFKFLFFFIIFWSISIYYPMVHMVWSPNGLLSKLGALDFAGGTVVHIDAGITALILAIFV GPRTKKEPHHYNLAWVLLGTAILWIGWYGFNAGSALAVNSSSVLAILTTTMAAASAMATW SILELIHNKKVTLVGTCTGVICGLVAVTPAAGYVSSMGAFWIGIIAAGLSFSFVTFIKPK LRIDDTLDAFGCHGISGIWGSIATGLFASKSANSNLTLNGLFYGGGLRLFLIQLLVTIIT IIFVGLTATTITILLKKFVTIRVTKEQEASGLDLSQHGEIIEQN >gi|297149550|gb|ACGQ02000001.1| GENE 362 382796 - 383509 1011 237 aa, chain + ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 237 4 237 237 329 73.0 2e-90 MPKKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEINPDLMILDLMLPKKD GLEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR DIVQKQVDENENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMT REHLLQTAWGYDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYVKDPNEE >gi|297149550|gb|ACGQ02000001.1| GENE 363 383545 - 385407 1813 620 aa, chain + ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 4 618 1 610 610 489 43.0 1e-138 MVKMKKIKSILNSLNTKIAVVFMLMILATIEIIGAYFTRQLEQSTIESFQTSIQIPTIIT NSLATQLSKNTKKADEQLSQIVSNYNNSAISEIIVVDNKDVIRAVSNLNDKSRVGQRATN VGIKQVTSTGRQITWIDSNNNGSNMVQITPLTIGTGTNSTLGAIYVRANMQGVFDNLRNI SYMFLTASFAASILSAILALFISRAITKPIEEMRMQALQVADGDYSGQVKIYSNDELGQL AEAFNTLSIRVERSQEQSESERRRLDSVLSHMTDGVIATDRHGNVIILNQMALSFLDIKE KDAVSKPITKILGLDDDVSAQELIGNQQEMMITVNEGTPDEMILHANFSLIRRVTGFVSG AVCVLHDVTEQQKNENEQRQFVSNVSHELRTPLTSLRAYIEALNDGAWKDPEIAPQFLEV TQEETERMIRMINDLLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQ KKYSIKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQNQIILSIS DQGLGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGS TFYISLPFEPMSEEDDWDEV >gi|297149550|gb|ACGQ02000001.1| GENE 364 385397 - 386749 1482 450 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00075 NR:ns ## KEGG: LCRIS_00075 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 12 442 15 449 453 375 49.0 1e-102 MKSKNRAIDIALHIATGAVIITSIVLWIFILTSDQRFSGLNQSTDTDTTHVKNSKSVKDA YLPTEVFGYRNNQLYQLYDSDKNLPLVFSKEFNNAKIESIKPIFNTKKDYQKFLTNKTYL QLTYPDQITFGIFSSNVSKYKNSEFNRIFIAQKDGKFKLYAGNDLNFRIYEVSLKNGNFA KLLKYAQKAESKTAVSLIRLSEGYEVSYKNDLTVNVYSYLISNPSDSYFVSRLLGTSGVS SKTTGNVTTYTAGLYNHLEVPKSNSKDYHNYTYINYQKSSIPNPNTRLSDSVTYVHKLGL VEQDLRFFDAEGSSVVYTNYIEGYPVFIKTQGPQIQIRYSTDNITIKFNSTNLQIPVPFD GRTVKIPKTSTVIKTLQAKGIAKSDIQRMTIGFELVRDSAHDSLVDLIPTYYIKIYNHWL SLSEWQNANLAKYRTSTTSSANGLNVTREE >gi|297149550|gb|ACGQ02000001.1| GENE 365 386753 - 387565 599 270 aa, chain + ## HITS:1 COG:lin0318 KEGG:ns NR:ns ## COG: lin0318 COG4853 # Protein_GI_number: 16799395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 269 1 264 279 68 25.0 1e-11 MDHRRIEWLFFVIFFAISVFLGIELWRTPIQLSGTSSDPNTTTNISDEIKADNIDLPSLS EDTASGYYLAASDQNYFKNVKNLRNVNTNYSTTDKTFYAVLQKAVNLSTDSNKALAQVKA FKNNSHYVPFGKQYVYVDELSDDNNYVFVQNSKFGKVYDASAELIIKVQKHQIVSYQQGY LGKLSAVRELQSTISSWKAIQNLYVYRELTNNSKVLWIKLEYSKLTEVRNSIILLPTWVV EIENKTTKMSSIKRVNAFTGQVIQNNNVTD >gi|297149550|gb|ACGQ02000001.1| GENE 366 387651 - 388373 707 240 aa, chain + ## HITS:1 COG:L582 KEGG:ns NR:ns ## COG: L582 COG1235 # Protein_GI_number: 15672377 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Lactococcus lactis # 1 240 32 270 270 216 48.0 2e-56 MDAGLSGKKIKDLLAQVGVDIKDIDMAFLSHDHSDHSKGLGVLMRRYPQINAFANSGTWK YLIDENKIGKLPVEQINAIEPGQVRTFDDLEIQAFATSHDAAQPQYYVFSSAGKRIAFLT DTGYVSEKVRDVIKDSDAYMLEFNYDNELLRNGPYSWQLKQRIMSDYGHLSNEQASEVFE DVLTAKTKHIFLTHRSQHNNTLRLAHDTLVNNLARDEVDYNPQLKIIDTDPDIPTDLIKI >gi|297149550|gb|ACGQ02000001.1| GENE 367 388452 - 389732 1580 426 aa, chain + ## HITS:1 COG:SP2239 KEGG:ns NR:ns ## COG: SP2239 COG0265 # Protein_GI_number: 15902042 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Streptococcus pneumoniae TIGR4 # 77 426 49 387 393 232 47.0 1e-60 MTEDKNQNIQNKSQNQASRSNLNTADKSQNKLLTKAAIVGVVAGLLGGGVSYVGLEQYSN YAGSSSAQTSISSSSASISKTSAKNSGTMTSAYNKVKGAVVSVINLKKNSTRKSNSIYDL FGGSDDDSSSSSSSSTTKYTTYSEGSGVIYLKSNGKGYIVTNNHVISGSDKVQVVLASGK TVDAKVVGKDSTSDLAVLSIDAKYVTQTASFGDSKSLITGQTVIAVGSPMGSEYASSVTQ GIISAPSRTITTSSNQQTVIQTDAAINPGNSGGPLVNSAGQVIGINSMKLSQSTDGTSVE GMGFAIPSNEVVTIINQLVKNGKVTRPQLGIKVISLSELSSAYKEQLGIKTNLKSGIYVA SVTKNSAASAAGMKSGDIITKVDGTSVSDVVSLHEILYKHKIGDKVTVTVDRNGKTVNLD VTLKSN >gi|297149550|gb|ACGQ02000001.1| GENE 368 390199 - 390678 651 159 aa, chain + ## HITS:1 COG:BH4007 KEGG:ns NR:ns ## COG: BH4007 COG1576 # Protein_GI_number: 15616569 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 159 1 159 159 190 62.0 1e-48 MNIKIVCVGKLKEKYFKDGIAEYAKRLSRFAKFKIVEVPDEKAPENMSEAEQEHVKEVEG EKILSKIKDKEYVIVTAIKGRERASEELAKEIADLGTYGHSDITFVIGGSLGTSPAVNKR ADDLLSFGKLTMPHQLMRLVLTEQIYRAFMINSGSPYHK >gi|297149550|gb|ACGQ02000001.1| GENE 369 390858 - 391628 293 256 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 218 1 212 311 117 34 1e-24 MNKILMRTESIKRYFKGKNKTTFKAVDGISFTLHKGEVISFVGPNGAGKTTLIRSISGYL VPTSGKIEIMGLNLAKKLREARQKMGVVFGGDRGFYNSASAYDNLAFFARLLNVKEKDIK NNVLNALEIVNLLDVKDKYVGSFSKGMMQRLHIARGLVNQPEILMLDEPTAGLDVESVYT VRELIKNLKETGHGIILTSHDMADIETLADTIYLIGGGKLVFSGNTDQIKELAGVDANTS LEKAYLAIAPKLKRRL >gi|297149550|gb|ACGQ02000001.1| GENE 370 391631 - 392368 607 245 aa, chain + ## HITS:1 COG:no KEGG:LJ0601 NR:ns ## KEGG: LJ0601 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 2 245 1 244 244 236 61.0 6e-61 MLRFINLVKFQLKLYVKNSYFVMLVITTTATMELYQYLAHYVNQTYTGQEWLIAGIMGTW ASCTTSAGALAYQRWQGTLPYLLNSGISRELVLLATLSPAAIYGLVAFPLAGVLALVLGM PVANLSWTLGLGIVILWLTATVLSYFISLLFILTRNAMAYEELVLTPILLLSGLLTIPSF ALPYLKPVQILSPLTLPIKLIYQEKLNLELIITYLLVTIFFVYISKILTEVVIKRAFKEN RLGVF >gi|297149550|gb|ACGQ02000001.1| GENE 371 392368 - 393084 653 238 aa, chain + ## HITS:1 COG:no KEGG:LJ0602 NR:ns ## KEGG: LJ0602 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 4 223 5 224 239 195 48.0 1e-48 MENYKVTFSTIGDFENLRTIIVNYLILPVVSLVMFLLIIYGTEQDFRRVLIGSLVTTAII TMIGIITGSYCYDQNVGTSEEIISIKPKFSQYWLPKIVIASVAAALELLILALIALTSMG MLAYAGKLASGFLIMIVFASLLAYICALAGDQRENPYWLTNIATASLVLVAGVIIPVSQY PTWLRVVAEVFPVSDLLDWILAGSYFNQALAVALFKLGLWFILAGGMRLYHNWYVRNR >gi|297149550|gb|ACGQ02000001.1| GENE 372 393190 - 394761 1501 523 aa, chain + ## HITS:1 COG:L162870 KEGG:ns NR:ns ## COG: L162870 COG1132 # Protein_GI_number: 15673504 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Lactococcus lactis # 221 522 223 526 529 134 29.0 5e-31 MTLKYAHPFKLFMYLILAIIKSFEMVFVAYTFKLFIDYANKPKGSLLNIVLAAFGVLVLL GIAGVLYQLLYANIVTEINLNIKAKAAKYLLVNRNSNSEIDVSFMTNDLKQLETNRIEAQ LDIIMNAIQFISAFVSALLGSWILSLVFLFAAFAPALLQNIFGPMIEKSSDVWEKENRKY TNTVDDSLTIAPMAQLYDVEPSLMHRLYKAAKNMELALRKTNSVKQIANELTMTLAFICS MLLPFAIGVYLVVNGQITLGTIMMIAQLANNFINPIVGIFGDINNVKSTNPIWNKFLAIP ELTEESTESATNKFTNLKIQNAAIKINDKQIFSNVNLDVKSGEKILLDAPSGWGKSTLLN VIIGNYKLTTGDYLFNGKEENGNWNQLHQYFSFINQKPIILDDTLGFNITLGRKVSAEVL DNAITKAGLKELVADKGLDYQVGKNGKNLSGGQNQRVEIARAIIANRPILIADEATSALD QDLSEKIHQTILEDFPGTVIEVAHKVSEKEKAKFTQVVELAKA >gi|297149550|gb|ACGQ02000001.1| GENE 373 394898 - 395314 590 138 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 7 138 11 143 293 122 45.0 3e-27 MLEDNKYYGFTNDEIFGSIMQNKRFCKAIIQAALPDVNVVSVESIDAQKELGTKSDKRSK SVRLDIAVKDQSGNLYDCEMQVNNNHDIGPRMRYYQSSMDRDTLDRGEPYTSLSRTYLIF LCAFDPFGKGKLRYSFHL >gi|297149550|gb|ACGQ02000001.1| GENE 374 395516 - 395743 194 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|260661552|ref|ZP_05862464.1| ## NR: gi|260661552|ref|ZP_05862464.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Lactobacillus jensenii 115-3-CHN] # 1 75 68 142 142 108 100.0 2e-22 MRTAELRMKEETAIAEKRGREKGDKNTVQSFVNFFKRSKAQMSEEEIFSAIKDSVSSNFS LSDSDIKAIIHQNMK >gi|297149550|gb|ACGQ02000001.1| GENE 375 395861 - 396403 601 180 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851731|ref|ZP_05557119.1| ## NR: gi|256851731|ref|ZP_05557119.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 180 1 180 180 325 100.0 6e-88 MLFRLNNETKSENVRNLKVNKHTNSQSSKQQYEISSVYKAENVEETISESSSSDDIETNY GKIGSFDVPKEFQGTWYMALENGKIIDLRISEHTINEDLLFIKDPNFQVASDDPRVKDFP SDIQSWYDTKLVYYKGDKVISLVHWLLSGTDSFNYRLHNEDGNQVIVWVHGPLSERCVFF >gi|297149550|gb|ACGQ02000001.1| GENE 376 396458 - 397138 523 226 aa, chain - ## HITS:1 COG:no KEGG:LJ0072 NR:ns ## KEGG: LJ0072 # Name: not_defined # Def: ABC transporter permease component # Organism: L.johnsonii # Pathway: ABC transporters [PATH:ljo02010] # 9 222 1 215 217 164 47.0 2e-39 MFKTEEKILNPSFKFLLLLIIALVISATNSVELNLIVIFACFIYLIKYHLKLTQFFKLLL YPALAAICAFVTIAYFSKNSVYDATSLASRIYVYVFTGACLTLTTDMTTLARSFEQNLHL PAKFAYGFLAAVNILPKMKRQIKQIRYAGLMRQTPLSLFSPRLYFKALLAALANSELLAQ AMTSHGFNEDKKRSVLQVVQVRFSDYLWFGGILVIFIVLVFFSYFL >gi|297149550|gb|ACGQ02000001.1| GENE 377 397104 - 398498 1108 464 aa, chain - ## HITS:1 COG:SP0720 KEGG:ns NR:ns ## COG: SP0720 COG1122 # Protein_GI_number: 15900617 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 78 456 77 441 461 202 33.0 9e-52 MKGGFILTSIMLSHVNFAYDKQSIIQNLSINFAPGKIHLLIGENGAGKSTLLKIMAGLLP KFGGKLTGKISIDAKTNMMFQDPELQFALPTAYNELIFTMENLKVSRETYKDKINHVAKF PGISHLLKQPIAQLSGGEKQKVALAILLAMDSDLLLLDEPFANCDLASRRNILIKLKQLV KAGKTVIIVDHDLPDYETLADEIWLFKDKQLHPLTNEERTKLFKQLKQPYKVKFSLPQNQ KSIFNFSNTVIKQHLPLIEVSTQKIYQGKITLLTGENGAGKTTLFKTLTKMHPYYGNLTY KSKEIKGWHLKPYLASVAQVFQEANNQFLEITVQEELTLSQKKQVNPYFTKEKLAKSLEK LSLNKLLDHSVYTLSGGQKKKLQILLMLLNNHDVLLLDEPLAGLDTASRQIIINLLSDIQ KQTNQTFIIISHQICELTPICDYHLVLAKKGLTYVQNGGENLES >gi|297149550|gb|ACGQ02000001.1| GENE 378 398688 - 400160 1314 490 aa, chain + ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 478 1 477 486 244 32.0 2e-64 MNKKRITIVTMALLLSNAMSGLDNTIINTALPRIIADLKGIEYMGWMVSVFLLGTAVATP LWSKLGERTSNKLAYQLAALTFLLGALFQGMAPNMFILLLARLICGLGNGGMVSIPYIIY SDLYPNPAKRMRTLGLVSAFYSSATIMGPMLGGWIVDTLSWRWVFYLNIPVALISIILVQ IYFIDEKVERPKKKVDLGGAITLTLGLIIMLIGVDLIGETQLGTLLILFAAALIFFGMLI IIEKRAEDPVIPGRLFKNSDLNIDFALFVLIWAAMMAFSVYAPMWAQGLLATSAFIGGAT QIPGAFTDLCASLSVAKMREHWSAGQVVLIGIGSLLIGYFIMMFGPITMPYFLIILAGMF QGVGNGIVFNELQVKVQQDVEKQDVPVATSFSFLIRMIASAVAASVFGLIMNASLFKGVR ESRGSITINMLNHLSDAETSKLLPQALLPQMRQILYSGIHNIMIVATILIIASFFIGYYA RQKEKHSISK >gi|297149550|gb|ACGQ02000001.1| GENE 379 400202 - 401143 769 313 aa, chain + ## HITS:1 COG:PA3220 KEGG:ns NR:ns ## COG: PA3220 COG2207 # Protein_GI_number: 15598416 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Pseudomonas aeruginosa # 206 303 150 248 254 66 34.0 6e-11 MAIFTLDQYLKGVIKNTKQNTNDLKLDSKNKDQKDFAIYVENHNGGIHRYHSQEEWLFVE NGTCSIKFHNQILDLTAGNLVLIKAGQAFEIKEQTSETVVVKMRVKAIYNFEKELQNYLS LDDKENEILVTVKNLLAEEGYLFIKTSRLMKQSQLIENIINEYLNGDLFMAPMMAGTFSQ LLALSLRMQTFNRTAGKTKKVNFIGSDLDRYIDLHFADIKLAEAAEYFGFNQNYFSNLVK QKTGKSFVEHVDERRMQEARELLAQPNLSLKEIISRVGYSSKSFFYKKFSEYYGTTPALM REELFRQANINLK >gi|297149550|gb|ACGQ02000001.1| GENE 380 401162 - 402964 1583 600 aa, chain + ## HITS:1 COG:FN1127 KEGG:ns NR:ns ## COG: FN1127 COG4907 # Protein_GI_number: 19704462 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 36 542 27 537 606 96 21.0 2e-19 MKKIINLLLMLGVITLLFSITGQRVLADSPSYDITNVKVASHIQADGSLTIERKITYKFD SSARGVYYRQNLLKNQKLLNPQVKIINQGVTKTIINNSSGSNDTYQLSYKNGYQFKVFHK VKAGNRFTIVYRYKITNAIKNWQDTAELNFKIIGNGWETDLDHVEAEVVFPSKVSMLKAW AHGDLSGRIQVLPDKGRIIMTADNVAGNTGIEVHAIFPTSVTADNKNVSNEKRKQFILKQ EKQLAEEANRRRKRAGYILIFSVIVSILAIIASLFVKKQGSKPKKMSALAHSYEIPEVSP IMAQILDNTSKPDTQALMALITELTGKHKLEIREEKIGKIIKKSSYRIFLKDQTALSQQP LLRFLFDEVGNGASFSTYELKKFDDPKELSEKYQAWRNQYYKQAYQRNYFSNKIREKKQN IVALAGILVAINAIIIFLSCMLSIISWQLLVLAIILAILNGISWLVAASRLGIYTEKGAE ITNQVRSFKKMLENIGNFKMRDIGELILWEDIMPYAVALGLSEKVLKQLRLEFSESELAT SDLVVYQALYLNNSSSNNFEHSFTSAFNAGSSISSDSGSSGGFSSGSSGGFGGGSGGGAF >gi|297149550|gb|ACGQ02000001.1| GENE 381 403150 - 403812 749 220 aa, chain + ## HITS:1 COG:lin1927 KEGG:ns NR:ns ## COG: lin1927 COG1760 # Protein_GI_number: 16800993 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Listeria innocua # 4 211 3 208 220 152 42.0 7e-37 MANYRSVFDIIGPVMVGPSSSHTAGAVAIGNAARLIFQKTPKKVVVHYYESFAKTHRGHG TDFAIAGGLLGMTPDDERIPNAPKLLAEAGIKLRFVEEDGPSPINHPNTAIISMSDDEKQ ITVGGCSIGGGIIEIRLIEFQGNKMNLTGPLPMILYLVHGKNNPLVNELNEILEQEASLQ KVQKWPIGDSELFEFDIAKYLSPKRFSELQEKFKGIIYLK >gi|297149550|gb|ACGQ02000001.1| GENE 382 403821 - 404702 1168 293 aa, chain + ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 290 1 290 299 306 60.0 3e-83 MFDSVKEIVEAANNTGKPISELIIEEEIKTSGLSREEIWKKMRFNLQTMQNAVKRGESGK GVLSSTGLTGGEAVKVAKYRQTHRTLSGDTMMGAVQAAMATNEVNAALGIICATPTAGSS GTLPGVIASLEKRLNLDEDALVRFLFTAAGFGWVIANHAGIAGATGGCQAEVGSASAMGA AAAVEAAGGTPQQCAEALSIAISNLLGLVCDPIAGLVEVPCVKRNAIGAANALVSADLAL AGCASVIPADECIMALDKVGKSMPAALRETGIGGLAGTPTGQAIKAKIFGKDA >gi|297149550|gb|ACGQ02000001.1| GENE 383 404712 - 405026 492 104 aa, chain + ## HITS:1 COG:lin2362 KEGG:ns NR:ns ## COG: lin2362 COG2151 # Protein_GI_number: 16801425 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Listeria innocua # 5 103 3 101 102 105 50.0 3e-23 MRTPEVIKDEIIKQLATVVDPELGIDIVNMGFVYSIDLDEDGICLVELTLEILGCPLEFV LAKMIKEVLVKVPEVKNVDVEFRTEPRWTKERMSDYAKFALGVS >gi|297149550|gb|ACGQ02000001.1| GENE 384 405069 - 405965 963 298 aa, chain - ## HITS:1 COG:SP1283 KEGG:ns NR:ns ## COG: SP1283 COG0501 # Protein_GI_number: 15901143 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Streptococcus pneumoniae TIGR4 # 1 298 1 299 299 295 56.0 9e-80 MLFEQISKNKRKTVLILTIFVLILALVGAAVGYFVASSMVTGIIIALIGTGIYLAIVLHD PAQLVMSMNNAEEIHEQDNPELWHIVEDMAMVARVPMPRVYIIDDDSPNAFATGRDPEHA SVAVTHGLLEMMNREELEGVLGHELSHVRNYDILVSTIAIAMLTVITLLTDFTSRYLFWF GGSRRERDDDDNDNKNLEILKVVLFVITILLAPLAATLINLALSRNREYLADAGSVELTR NPHGLISALKKIESSQPMENVSSSSRALYIEDPVKKEHGSLFDTHPPTSERIKRLENM >gi|297149550|gb|ACGQ02000001.1| GENE 385 405969 - 406529 696 186 aa, chain - ## HITS:1 COG:lin0961 KEGG:ns NR:ns ## COG: lin0961 COG1704 # Protein_GI_number: 16800030 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 184 1 185 185 199 55.0 3e-51 MTIWIILAIVIILAIVYITTYNGLQNAKVYTEESWSQIDVQLKRRNDLIPNLVETVKGYA AHEKETLSQIVELRNQLTQVPADDHEEKMKVSNQITDSLKTIFALSEAYPDLKANQEFGK LMEELTNTENKIAYSRQLYNSSAALYDRKLLTFPSNIVANIHHFTKVEYLVTPEAEKEAP KVSFKD >gi|297149550|gb|ACGQ02000001.1| GENE 386 406629 - 407735 1025 368 aa, chain - ## HITS:1 COG:L20481 KEGG:ns NR:ns ## COG: L20481 COG0471 # Protein_GI_number: 15673760 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Lactococcus lactis # 35 364 49 388 392 142 32.0 7e-34 MTVLKNIFKDRIFQISLVITIISLFFARPRIADINFHTLYSVTAMLCLIQIYAYLHVLDI LAYKLTSLADNTRKLTLLFTLLSVLSGMFLGNDITVLTLIPLYLNIAKKYQLPQIYPATL IGMGANIGAAFTPWGNPHNIFIVSNYNVPADVFFAWSTPYLIVSLVILIATCFFLPKDHI PVNQTENIHVNWRMTILTTAVFIFFFFGVFSIVPIYYPMIAALLLALLINPRIYLKIDYA LLLTFTLFFIFISDIQQIPLIVGLIHMTVYSEGSTYLTSIISSQFISNVPSTILVGKFTN FAKALLLGSNIGGFGSVVGSMANMLVLKTFNQHASASKSKFFKHWTILQFSGLAILTIVG WLIIYFNI >gi|297149550|gb|ACGQ02000001.1| GENE 387 407922 - 408323 635 133 aa, chain + ## HITS:1 COG:no KEGG:LBA0100 NR:ns ## KEGG: LBA0100 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 133 3 135 135 155 55.0 5e-37 MTDKTIQITIKDEAKELIKKHVKPGQVVILTLDDGSNKYSTLGGTCTIGADFQLIVTDQK DPEYPVVMENNAGLEMYTSNNELGFLTDGLLLNARNAVISLYDNSGVIDGAVAVREYTPH ELTAEEVKNGKTC >gi|297149550|gb|ACGQ02000001.1| GENE 388 408414 - 408974 151 186 aa, chain - ## HITS:1 COG:no KEGG:lhv_1083 NR:ns ## KEGG: lhv_1083 # Name: not_defined # Def: putative transposase # Organism: L.helveticus # Pathway: not_defined # 1 186 100 285 285 368 96.0 1e-101 MNKKVDLNGHFLIIDSFPVPVCQPIRNYRAKIFRGYANIGYKATKKIYFYGFKVHAIVSD DGYILDYVVTKASVHDAKETVELLENAHPSNYYLLGDEGYLGKELHQQLKQMGYELWTPY RKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAY CLERFN >gi|297149550|gb|ACGQ02000001.1| GENE 389 409593 - 409727 191 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSRNIHTGINPHRRPRNAANSKKRVAHAAAVVAYLNKAAKDENK >gi|297149550|gb|ACGQ02000001.1| GENE 390 409873 - 410514 708 213 aa, chain + ## HITS:1 COG:lin2634 KEGG:ns NR:ns ## COG: lin2634 COG1896 # Protein_GI_number: 16801696 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Listeria innocua # 1 191 1 190 215 228 58.0 6e-60 MGLHAYLQGLSSLESIDRAPGYFKYQHHSVAAHCFRTAEFAQMMGDIEEVYGDQEVNWKA LYEKSLNHDYTERFIGDIKTPVKYATPQMRKLVGDVEEAMTNEFIKHEIPAEFQEIYRNR LSEAKDDTLEGKILSVCDKLDLMYEAYGEIELGNPNPVYMQMFKESLETIKEFDDLACVK YFIKKILPDLFKGDFAGAVKMQKIAFNILVEEN >gi|297149550|gb|ACGQ02000001.1| GENE 391 410514 - 411428 815 304 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00095 NR:ns ## KEGG: LCRIS_00095 # Name: not_defined # Def: restriction endonuclease # Organism: L.crispatus # Pathway: not_defined # 1 304 1 305 305 412 67.0 1e-114 MRFQCESCGLRLASFHFKEKGLINPKLRSICDICLERGLSAEDYANDVIATFAQALLYSY VGQSGEGSHNFIVKSQKQRKAYEAFVQDFDSNEVASGQIARSELNKAIIKSEDGQLDFVP QAGTEFSKNLVGLGLKVNFQLNEVDYINRERIRAKYKYICQYCGRPGRSVDHKDPVSLSH NNELDNLILSCSECNRIKSDMPYDLFMKLNKEVENLNKKLVRYDASLRSLKEEFEQRRRY LAAQVHLRGVVNDPELNDIRKANKRLQDAIDSLESDYDAIRRLRENHFTTGWKLALEAKK DDIV >gi|297149550|gb|ACGQ02000001.1| GENE 392 411492 - 412376 1043 294 aa, chain - ## HITS:1 COG:SA0610 KEGG:ns NR:ns ## COG: SA0610 COG0657 # Protein_GI_number: 15926332 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 40 243 56 271 347 89 31.0 7e-18 MTAFARPDNYDDLRALFKKGDDERDKDLPTHIPEVERIDNLSYGPDSKWNLLDIYLPSQR SGKVPTIISVHGGGWVYGTKETYQFYCMSLAKEGFGVVNFNYRLGPEVAFPGIIDDIDLL MHWLEKNAGNYQLDLSNTFMIGDSAGAQMAAQYLTIMTNDTYRQKFGYNEVNFKIKAAAL NCGAYFINYPDVLDGSMRGYFTEEVMHKYDEILHTENFITQDFPKTYLVTSNQDFLRDCT VRFDGFLTGKEIAHEFHTYGDEDNPKPHDFHCNIKDNVAQNCNHLEMEWFKQFI >gi|297149550|gb|ACGQ02000001.1| GENE 393 412546 - 412839 287 97 aa, chain + ## HITS:1 COG:SPy1870 KEGG:ns NR:ns ## COG: SPy1870 COG2188 # Protein_GI_number: 15675689 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 17 97 15 96 247 82 47.0 1e-16 MYSQKQRNLDLKRKLRYVKVYEDIYEKIKTGIYPLNSQLPGEMELAKEMNVSRMTLRQAL AFLQDDGIIKTIKGKGNFVIFNPADWSKGLEIVSNPV >gi|297149550|gb|ACGQ02000001.1| GENE 394 412849 - 413292 381 147 aa, chain + ## HITS:1 COG:SPy1870 KEGG:ns NR:ns ## COG: SPy1870 COG2188 # Protein_GI_number: 15675689 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 4 133 104 234 247 101 43.0 4e-22 MNKITGIELNYRIEPATKYTNEILGRDTGIVVFVDRWYLSEKKPVAYCFSTLPGDNIAKL GLDLNDNEALSDFLENKIYEQASHSEIQLEFSKMGNVHSVRYKISEADAFYLLQEKIYID GEYPVIHNKFYMPINNAILNINATEKR >gi|297149550|gb|ACGQ02000001.1| GENE 395 413446 - 414357 985 303 aa, chain + ## HITS:1 COG:BH3728 KEGG:ns NR:ns ## COG: BH3728 COG0524 # Protein_GI_number: 15616290 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Bacillus halodurans # 2 303 5 292 294 208 42.0 1e-53 MNICVLGSLNVDLMISTDRLPVKGETVHGNDGDYLLGGKGANQAVAASRMGIETNMIGCI GQDTFGDKILKYLSKEENLETSHIKRLNTFSGIATVFKLPSDNAIVVVPGANNLCDETVL TENQKLITNSDIFLTQLEIPLEIVSAGLKLAKSHGVITVLNPAPYQDLPEEVLTNTDYIT PNDTEFAGLAGKEIHSKAELFTAMLEWQAKHSTRLIVTRGEDGVSYVENGEVVTVPAILT HAVDTTGAGDTFNGIFCYCLAKKMPLEEAIKTARLGASLAVRKVGAQTGMPTLAEIENWR EEE >gi|297149550|gb|ACGQ02000001.1| GENE 396 414354 - 415304 1219 316 aa, chain + ## HITS:1 COG:Cgl1931 KEGG:ns NR:ns ## COG: Cgl1931 COG1957 # Protein_GI_number: 19553181 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Corynebacterium glutamicum # 2 301 3 300 316 298 52.0 1e-80 MKKVILSIDTGIDDAMALAYVLGSKELDLIGIVGTYGNVYTKQGVKNDLALLEMLGRKDI PVYLGNEHAIDKDDFEVSEVSADIHGQNGIGEVEVPAATRQVETGDGVDFIIDSVKKYGK DLTVIATGPMTDLARTLKKYPAFKDEVGQVVIMGGALACTGNVTPYAEANIHQDPLAAKI LFESGTPVIMVGLDVTMRTPISLEDTQKWRDTKTVAGEKYADIVDYYIHIYDKYSPYLHG GSLHDPSATCAAVHPEWFTMLPLHMTVETEGETAGRTIGVMEKLREPNPNVKVCINIEAE KVRQDICNTIHGLFTK >gi|297149550|gb|ACGQ02000001.1| GENE 397 415319 - 416710 1732 463 aa, chain + ## HITS:1 COG:SA0132 KEGG:ns NR:ns ## COG: SA0132 COG0477 # Protein_GI_number: 15925841 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 11 448 7 439 450 159 28.0 2e-38 MDKVEKAVDPKIKKLLLSLFVLFIMTNLMVQAFVTASPLIAKSFKITASLSSMQSTITTL AMGVGSVIFGTLSDYIPARKLLLFGVTLISVGSIIGFAFQSFYVSIIIARALQSLGQATI SSLVIVIISRYISGKAKVRYFAYYTGCFQVAQSAGVLIGGLITAYVPWQVLLLLPLVAIF FLPIILTCAPNDNGGTKQHVDFMGLLMFAVTIILSILFVNSLTMGYLVGILVLLAIFLVY ISKNNKAFITPQFFKQNRSFPRAILITVGIYCGQFAYTFLTTFIVSYGYHQSLSNVSAIF LPAYIASAVAGILGGDKFLKILGQEKTIILGMIMMTAGFLVAGLLINLGSVVLSIGAVLY FVGNTIMYSPLLDTVTGVIPKSEIGRGAGMFDLSINISGSLGVAISGKLISTKAFDGFNF FHANVGLVTFQNIFLVFALIALITIVTYFACQNKFEAAMKANA >gi|297149550|gb|ACGQ02000001.1| GENE 398 416755 - 417207 504 150 aa, chain + ## HITS:1 COG:alr4634 KEGG:ns NR:ns ## COG: alr4634 COG0590 # Protein_GI_number: 17232126 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Nostoc sp. PCC 7120 # 1 139 1 135 140 103 40.0 1e-22 MNDEKFMQEAIELSKKAVEHGNEPFGAVLVKDNEVVFTNENQIFTANDPTFHAETGLIRR FCTSTGITDLSEYTLYTSCEPCFMCSGAMVWSKLGRMVYAASNDDLEMTMGKHGSNCSKI VFENYNNAPTVTSGVLREESVAVLKAYFGK >gi|297149550|gb|ACGQ02000001.1| GENE 399 417388 - 417558 201 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851753|ref|ZP_05557141.1| ## NR: gi|256851753|ref|ZP_05557141.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 56 1 56 56 90 100.0 3e-17 MDFIKKHVFWVGELVILLACLIWYSVSGHTLPSTLLNSVAITVLAGLIIKLINRKK >gi|297149550|gb|ACGQ02000001.1| GENE 400 417567 - 418049 435 160 aa, chain + ## HITS:1 COG:SP2081 KEGG:ns NR:ns ## COG: SP2081 COG3542 # Protein_GI_number: 15901897 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 153 2 147 153 136 49.0 2e-32 MDAKEYIEKLNLTPHPEGGYFKEVYQAKGEYELAEGKRKYFTSIYFLLTPETKSHLHRLN HDEVWYYHDGASLKIHCLYPDGHYQLVKLGKDLANGEQLSFDVPAGVIFGSELAAGEFAL VSCMVAPGFDYQDFELFSQAELIKLYPEQKQMIIDMAYKK >gi|297149550|gb|ACGQ02000001.1| GENE 401 418074 - 418373 399 99 aa, chain - ## HITS:1 COG:no KEGG:LSEI_0563 NR:ns ## KEGG: LSEI_0563 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 93 1 93 110 88 45.0 6e-17 MSREQLKKGYETEIAYQKHMLRNLSYYFELAILVSAIGMVMTYYFWGKNLPVLLLGIFIM VIGLLAMLILATGAIRGRKNLNLVIADYKKKIKTATTKE >gi|297149550|gb|ACGQ02000001.1| GENE 402 418506 - 419342 1018 278 aa, chain - ## HITS:1 COG:CAC1460 KEGG:ns NR:ns ## COG: CAC1460 COG3716 # Protein_GI_number: 15894739 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Clostridium acetobutylicum # 3 278 2 277 277 365 63.0 1e-101 MTDRKKISKKTLNKAFHHWYYGHLTCFSQEHMQTFGYLTSMLPIIEELYDKKDDQKEAMK TYTAFFNTEPQLGSIIVGITAGLEEAKANGDAVDGETINGMRAGLMGPIAGIGDSLIVGT LIPILLGIALGMSTGGSPVGAIFYIIVWNLIAYFGMRYLFFRGYEMGDKAVEFLVGAQGS AIRKAIGVVGAMVVGGVAATWVNISTAFELKNASGKTFLSLQKQFDSIYPGLLTVLFILL CWWLMSKKKISAINTMLILVVIAFVGVLVGFFNPGLKY >gi|297149550|gb|ACGQ02000001.1| GENE 403 419344 - 420195 1263 283 aa, chain - ## HITS:1 COG:CAC1459 KEGG:ns NR:ns ## COG: CAC1459 COG3715 # Protein_GI_number: 15894738 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Clostridium acetobutylicum # 1 283 1 281 281 312 62.0 4e-85 MTISWLQAIILGIFASLSSMPGMGGTSIGNYTLGRPLVGGLVCGIVLGDIKLGIACGVAM QLVYIALVTPGGTVSADVRAVSYIGIPLAMVAIHSQGLSATGADAANLAKSMGTLVGTVG TVLFYGTATMNLVWQHMGWKDVEKGKFHKLYLVDWAYPWISHICFSFIPTLIMTKLGATA VTALRNALPMDGIPMKTLFTVGAMLPCVGIAILLRQIVNTPVDFIPFLVGFTLAASLKLN LVSVAIVSLIFALLTYQLEMARASKVVAPTTSDTSADDDEEDI >gi|297149550|gb|ACGQ02000001.1| GENE 404 420223 - 420726 853 167 aa, chain - ## HITS:1 COG:CAC1458 KEGG:ns NR:ns ## COG: CAC1458 COG3444 # Protein_GI_number: 15894737 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 1 167 1 163 164 211 62.0 4e-55 MSVSFVRIDDRMIHGQTVTRWAKEMPCDGIIAINDAASTNPVLKQAYISAAESQGKKGFV WTLDHFKDVQEKVLASSRRYFLITKNPLDMKKILVDMGFVPDDVKTIVVGPGNDRPGAIK LGNNQSFTPEEGEAFEAISKAGYTVKFQLLPDVEIGTWDKYKNKFGF >gi|297149550|gb|ACGQ02000001.1| GENE 405 420739 - 421176 677 145 aa, chain - ## HITS:1 COG:CAC1457 KEGG:ns NR:ns ## COG: CAC1457 COG2893 # Protein_GI_number: 15894736 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Clostridium acetobutylicum # 1 143 1 141 142 99 38.0 3e-21 MKYLVLVSHGGFADGLKTSLAMFAGDQINRVFALGLEPGTSADTFKEKVNHFFDGHDFSN DDQFVVLADIVGGSPLTTFTSVLSERGFLANSQIFGGTNLTMALTALVSMDAMDKTTLSS TILSEAGNALEEFKVAAPEDDDDEI >gi|297149550|gb|ACGQ02000001.1| GENE 406 421373 - 422161 897 262 aa, chain + ## HITS:1 COG:HI0003 KEGG:ns NR:ns ## COG: HI0003 COG0561 # Protein_GI_number: 16271979 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Haemophilus influenzae # 2 258 4 257 262 125 32.0 8e-29 MRIIFSDIDGTLINDKLEILPRTKESILKEVKKGNLFVPVSARSPLAMQTVIKQLGIKCP LSAFNGALILNEEGVQIYSKPLPLAEAREIVKELNDLTSITWNIYSGLSWLTQKPKTQAL LAEEKIVKLRAKAIDISEIENLKCIHKVLVMGPKNILDELLKTYSQRYNNLYLVKSKDTL LEIVASGVEKADSIKRVSDYYHVEISNTLAFGDNYNDEGMLKTVGKGYLMGNAPEELKKH YPYITADHNHDGIAEVLENLEN >gi|297149550|gb|ACGQ02000001.1| GENE 407 422283 - 423113 757 276 aa, chain + ## HITS:1 COG:CAC1453 KEGG:ns NR:ns ## COG: CAC1453 COG1879 # Protein_GI_number: 15894732 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Clostridium acetobutylicum # 1 276 51 325 325 198 43.0 1e-50 MTMNNSFYQVLNEEVEKRVDARADKLIIRDPALDAQKQVNQINDFIKKGVSAIIINPVDG NNNKLIAILNKAHKKRIKIVVVDSQMADKAHVDATLLSDNYQAGVLCAKALMKKKKRANI LLLEHYSAMSANDRIRGFTDTLFNKNYHVVGKLNTLGQSEYAYPAVLKRLKTQADFDTIM ALNDQAAVGAIAALDSQKVKQVGVYSVDGSANMKQLLLNNQNATATAAQSPKEMGKLAFK LTYDLLAGKSVKSKIKLPVHLITKDNIKNYNVTGWQ >gi|297149550|gb|ACGQ02000001.1| GENE 408 423113 - 424429 1138 438 aa, chain + ## HITS:1 COG:CAC1454 KEGG:ns NR:ns ## COG: CAC1454 COG4585 # Protein_GI_number: 15894733 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 15 431 14 434 441 218 30.0 2e-56 MKGSFKKLIAFRRVLVWLNLIAVLFNSSVFYLASVYIVQSNMSFEFLNKINFLPGAPLTI FLSSTLSYLLLAIVMSYRHYFKKDEEHNSRLLLIEFFLTILVFWNLRFTYNGVILLYFVD LFISLRNKEPSRQLNLWLGMALFILVIFSLTDTVLIENISNIPQLDTYIEFLPLSTKTAV ILISNVLNVVNLIIFMGILVLYAIYLHNREYEVKEKLAKAAQTNLELQNYAALSSHIAED RERKRIARDLHDSVGHALTGVIAGVDAAKVLIDLNPEKAKEQLTKVSQVVKQGLEGIRAA LNKLRPGALENYTLQAALKKMLSEYSELSQMKFDFQYDWGSAEFEKTTEDVIFRIVEESV TNALRHGHASQVSIHFLVNKNYQILIKDNGSGCSKIKPGFGLTQMKERVAIIGGHIEFKS GDGFEVKVDIPKEGVNHD >gi|297149550|gb|ACGQ02000001.1| GENE 409 424422 - 425093 741 223 aa, chain + ## HITS:1 COG:CAC1455 KEGG:ns NR:ns ## COG: CAC1455 COG2197 # Protein_GI_number: 15894734 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Clostridium acetobutylicum # 1 219 1 220 225 276 63.0 2e-74 MIKVLIADDQELIRSSIQIILEANPKFKVTATVADGEEVLDAIKKERPDVILMDVRMPKM DGTVCTKYVKSKYPEIKVIILTTFDDDDFIFSALKYGASGYLLKGVSNDQLYQAIETVYQ GGAMINPNIAEKVFKLFSKMAQSNYAIQVDQTESKHFSKNEWRVIQQVGLGLSNKEISAK LYLSEGTVRNYISSILSQLDLRDRTQLAIWAVQTGVTSRDFGE >gi|297149550|gb|ACGQ02000001.1| GENE 410 425095 - 426366 1223 423 aa, chain + ## HITS:1 COG:CAC1456 KEGG:ns NR:ns ## COG: CAC1456 COG1653 # Protein_GI_number: 15894735 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Clostridium acetobutylicum # 35 422 38 437 439 265 38.0 1e-70 MGKNKAKLIIVTIFLLLLMGSVTYFAKISSEPKTLTIGVYTGSYWDVPQGDSYHMIDYVI KKFKKRYPNVRVIYESGITKTNYRSWLAASLVKGTEPDIFIVPTNTFNILASDGALLDLN GYIRHDKFKTSDFYQAALESGQYYNQQLALPFEVNPSLMVVNTSLLAKAKLKIPNFNWQP TQFELLNKKLRQKDYYGVTENFNWQAAVNSYQGQLFTSDGTKSQLTSNKVMQGLNLITEI VQLNNNVNVTSAMFDQGKVAFSPMTLAQYRTYTSYPYHVTRNSNFDWDVIKMPSMNKKSG TKLANVSFGISSHSRNATLAWQFMKLLVSKDVQTELIKYSQGVSPLKKIAQSTTMKRMLV SEGSNLTTQKLNAILNSGNVEPKFKKYYSVMDDADYQVENGLQSGKLETEVFEMQNHLNE ELK >gi|297149550|gb|ACGQ02000001.1| GENE 411 426413 - 427420 1013 335 aa, chain - ## HITS:1 COG:AF0807 KEGG:ns NR:ns ## COG: AF0807 COG1304 # Protein_GI_number: 11498413 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Archaeoglobus fulgidus # 49 326 93 357 366 121 31.0 2e-27 MTHKQNKVDASSGSSFTEKLEPESPQVWPGPKGMIPVTSGRADDANVHNRNYLDNILAEM RIIDAVKPDLTTEFFGKKYASPINLAAVSHLNKVLPDKRRKPMQEKVQAAKNQNLLNWIG MESNHDYAEIVKNSGDTVRIVKPFAEHEDIINELRFAQDLGAVAVGMDIDHVPGEDGKYD VVDGINLGPISFSDLRRYAHTTNLPFVAKGVLSVQDALKAKDAGASAIVVSHHHGRLPFG VPPLKMLPAIKEALADSDMTIFVDGSLMTGYDVYKAMAMGADGVLVGRAILSELLKSGQE ATEAKIKLLNEQLSQMMLYTGIPDTKSFDSSVLHF >gi|297149550|gb|ACGQ02000001.1| GENE 412 427492 - 428757 335 421 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148990506|ref|ZP_01821647.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae SP6-BS73] # 1 401 1 408 415 133 27 1e-29 MKVFFKNSNFRLFATGSFLSSAGDVLFYLAFMTYASNLKNYSLAISLIAISEAIPKFFTL FGGYLADKTRDKFKSIFNLALVRCILYTIVGLLLTTKMSDWNLVMCIALANFISDTFGTY SSGLVTPLIVAILGKENYAEGSGFANGMSQTISMLARFAGASMLLFMSYSSLAFINAATF LIAGILFALVGKRVNTQKLPLPKSNKLNFFQTLKTSFKQVKKQNNLLTMISILVLLNAVL AVLIPLFTIILATHKQTMLIGNYSFTLAISETIVGSGMILGSLFGPTIFKKTSVFLLAIL ASILALFASLSLFINNLFVILGTFALLTFFVATISLKMNQWLISSVEPSILGSTASLLNT LLLASDPFMTMLLSSITAISNVYIAISVLLCFNVLIIFLIITAYLKNKALKANISLADSE A >gi|297149550|gb|ACGQ02000001.1| GENE 413 429152 - 429994 523 280 aa, chain + ## HITS:1 COG:no KEGG:lhv_1911 NR:ns ## KEGG: lhv_1911 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 278 8 285 289 167 36.0 3e-40 MKIGELLQKFRLEQGKTRKEFASDVISPSYYCKIEKGSHRVSAEDLIELLKRNNIRLSDF FGMFDSQDLAKQLNLFHEMIVAAHYNGDKDSLKKIPNLIERSLLPEEVKKEQILIARGYL EIDKSSTEPVNWKLREQLREKVFNFPNWNEEKLTLFCNLMPLYDCFSVNLIVQDILKEYK PPFSKELKRILLGIICNNLFLKLKIGEYEGIDMLVTIADAIPSSPDLVFYKNNIIFYKNM ALYKSSNATKYLKNCQKAIEICAWLGMETYAQHMSEFLEG >gi|297149550|gb|ACGQ02000001.1| GENE 414 430046 - 430792 283 248 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 21 228 147 352 398 113 35 1e-23 MSENIISVNHLQKSYGDHQVLRDITFDVKKGEIVSIIGPSGGGKSTMLRCINLLEEPTDG EINFNGSDITKPGFNRNDYRSKVGMVFQQFDLFENKNVLQNCMIGQELVLKRSKEEAKKI ALENLKKVGMDPFVDAKPKQLSGGQQQRVAIARAISMNPDVLLFDEPTSALDPEMVGEVL DVMQKLATTGLTMIIVTHEMAFAKHVSDKVIFMSDGVITEQGSPEDIFDHPQAEKTQKFL RNFRKEDI >gi|297149550|gb|ACGQ02000001.1| GENE 415 430792 - 432354 1559 520 aa, chain - ## HITS:1 COG:SP0453_1 KEGG:ns NR:ns ## COG: SP0453_1 COG0834 # Protein_GI_number: 15900370 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 14 317 19 325 325 258 49.0 2e-68 MASIGFFGNNTQEVQAAKDNGVLRIGMEANYPPYNWTQTTSANGAIPIEGSKTYANGYDV QIAKLIGKKLGKKVVAVKTEWDGLLPALTSGKIDLIIAGMSPTAERRKAINFSEPYRKST FVVITKKTSKYANATSLDDFKGAKLTAQQGTLHYDLIKQLKGAIRENAMKDFAAMRQSLI SGTIDGYVAEDIEAQSFKSVYPDSTSINISKMKGFHVSASDSETSIGVKKGNDKLLAQVN AALATISNKKRDQLMATAVKEQPTTDNDKKTNWFVSTWNTYGSMILAGVGMTLLLALVGT IAGFFIGLVVGVIRTIPTPTSLLNRWLLKVVNFLLSVYVEVFRGTPMMVQAAVIYYGIAQ FWHLNLNRTVAALIIVSINTGAYLAEVIRGGIMATPKGQFEAASALGMSHNQRMWNIILP QAIKNCLPSITNEFIVNIKDTSVLSIISVSELFFVGSTIASQSFEFFQTYLMISAIYLML TFSITRIFNLIEKKLQGPKNYNLMANQVQVGTPEEQGGNK >gi|297149550|gb|ACGQ02000001.1| GENE 416 432713 - 433354 762 213 aa, chain - ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 7 198 3 192 202 150 41.0 2e-36 MNYQNFFQNRPTTEIAQDLLGRTLTYENNGEILGGLIVETEAYLGPKDYAAHSYNGRRSQ ANEGLYCPGGYLYIYAQRQYFFFDIATQERDNPEGVLVRAIEPTLGIETMIKNRAGKTGP LITNGPAKMMQAFGVTSRKWDLHPINQTPFSVDLTSRRPIKNVIAAPRIGVRQDDDWSKR PLRFYVAGNPYVSDMKKTKLEKNNGWELTKNKI >gi|297149550|gb|ACGQ02000001.1| GENE 417 433408 - 433770 347 120 aa, chain + ## HITS:1 COG:mll7394 KEGG:ns NR:ns ## COG: mll7394 COG3189 # Protein_GI_number: 13476151 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 3 115 4 114 120 106 48.0 8e-24 MSEIKLVRIYSHEQEKGFRVLVDRLWPRGISKVKADLDLWAKEMGPSNELRKWFNHDPQK FPEFKTKYLAEIKANSETKSFVELVSEKLKKGDVIFLYGAKDPLHNHAVILKEYFTSLLK >gi|297149550|gb|ACGQ02000001.1| GENE 418 433751 - 434446 763 231 aa, chain - ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 5 231 1 229 229 221 48.0 1e-57 MQENMQDLKNDLSKAQHIVFLTGAGVSTHSNIPDYRSKSGIYNGSTIPPEIILSEDTLYH RPNLFYQFVMNNMYFPKAQPNFIHKKIADICNKKGTLITQNIDCLDTKAGNKHVIEFHGN LYDIYCTKCLQTLDFKTYQKSYKHYCGGIIRPNIVLYGEGIDEQKLTKSISNIQKADLII IIGTSFVVYPFAGLLAYRQKDTPVWAINKTKIDAPSIRQITGDALTILKDL >gi|297149550|gb|ACGQ02000001.1| GENE 419 434534 - 435010 668 158 aa, chain + ## HITS:1 COG:no KEGG:LJ0094 NR:ns ## KEGG: LJ0094 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 3 158 2 157 158 143 45.0 2e-33 MTSLFYVLFDLLIIGYIIYSWYWQAVVDYPGRYRVSSIIWAVVFVYVSISWNFIDITQAG APVLLAVFLVMSIMDGVSGLGEKRIVISGYVRRTIKYSDLDQITLINAPLTSNKSYVVME LQSKGHVYYIRFAKGMEDVIATLKKHLGNDVGIKIESL >gi|297149550|gb|ACGQ02000001.1| GENE 420 435899 - 437077 456 392 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 378 46.0 1e-104 MNDFTKNIAQALLNQDKINDLLRKELQQAVNDLLEAELTAFLGYDPYARAGWNTGNSRNG AYFRKVDTQFGEIKIQVPRDRNGMFHQHTLPDYKQHSNVLESMIIKLYSKGVTTREIADL IEKMYGSHYSPAQVSNISKQMIPKVEAYHQRKFSDKFFCVYLDATYIPLRRITFDREAVY IAIGIKPNGHKEVIDYRIAPSENVENWTEMLQDMKSRGLEQVELFLSDGVVGMKTVLEQT YPKAQRQRCLVHVMRNICAKVRVDDRETIMNEFKQIHQQPNKEAAIKVLHAFYDKWNRAY NHVIRNLKEIEPDLLVFYSYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLNTF IGIQAMSYNERYFNRIHKGFGQVQDTLESYFD >gi|297149550|gb|ACGQ02000001.1| GENE 421 438043 - 438810 642 255 aa, chain + ## HITS:1 COG:no KEGG:SSA_0044 NR:ns ## KEGG: SSA_0044 # Name: not_defined # Def: hypothetical protein # Organism: S.sanguinis # Pathway: not_defined # 1 233 125 378 378 192 45.0 1e-47 MWLVKDSCVQTNNIYINSSIGYISSVKLDIPYSMANGHPQNIALTKTENQQVNFYYKMLY PIMSKVGGNIPNPEYNSEYSFIRNYDVTDRSKESSFIRAIRSVQNARRTCQLPVKIDFYM QALQCLFALEGNRSTQIEKMLASTAINILKISGENEKDVVKQNFKLAFRIRSKHTHGNKI TYSDNEISAVSVKIDEYVREIIKIVFENKALDYSSKNEAKKVAKYFSNINKKTVNSKQKN VLPFTFLFYKNKRKR >gi|297149550|gb|ACGQ02000001.1| GENE 422 439040 - 439324 290 94 aa, chain + ## HITS:1 COG:SMc02476 KEGG:ns NR:ns ## COG: SMc02476 COG3549 # Protein_GI_number: 15966812 # Func_class: R General function prediction only # Function: Plasmid maintenance system killer protein # Organism: Sinorhizobium meliloti # 1 94 1 92 92 95 52.0 2e-20 MIQTFANKETEKVYHQKFSKKLPQNIQKIAIRKFVMMDAAHDINDLRIPPANHLEKLEGD RKGQYSITINDQYRICFTVQTPNYFYNVEIVDYH >gi|297149550|gb|ACGQ02000001.1| GENE 423 439345 - 439644 369 99 aa, chain + ## HITS:1 COG:Cgl1005 KEGG:ns NR:ns ## COG: Cgl1005 COG3093 # Protein_GI_number: 19552255 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Corynebacterium glutamicum # 1 99 1 99 99 73 38.0 7e-14 MLKNTIPTPKISEVLSEEFMKPLNLSAYAVAKAIDVPSSRILDILHDKRKITVDTSVRLG KLFGVSPKFFLNIQNDIELRNAELANSKEYDKIKKISFA >gi|297149550|gb|ACGQ02000001.1| GENE 424 439827 - 441005 443 392 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 376 46.0 1e-104 MNDFTKNIAQALLNQDKINDLLRKELQQAVNDLLEAELTAFLGYDPYARAGWNTGNSRNG AYFRKVDTQFGEIKIQVPRDRNGMFHQHTLPDYKQHSNVLESMIIKLYSKGVTTREIADL IEKMYGSHYSPAQVSNISKQMIPKVEAYHQRKFSDKFFCVYLDATYIPLRRITFDREAVY IAIGIKPNGHKEVIDYRIAPSENVENWTEMLQDMKSRGLEQVELFLSDGVVGMKTVLEQT YPKAHFQRCLVHVMRNICAKVRVDDRETIMNEFKQIHQQPNKEAAIKVLHAFYDKWNRAY NHVIRNLKEIEPDLLVFYSYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLNTF IGIQAMSYNERYFNRIHKGFGQVQDTLESYFD >gi|297149550|gb|ACGQ02000001.1| GENE 425 441185 - 443314 2194 709 aa, chain + ## HITS:1 COG:BS_ybfG KEGG:ns NR:ns ## COG: BS_ybfG COG3409 # Protein_GI_number: 16077289 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative peptidoglycan-binding domain-containing protein # Organism: Bacillus subtilis # 1 569 2 592 732 383 42.0 1e-106 MDERVKEVQVWLNETYGGVPGFEKAPIDGKTGWPTIYSLREGLQHELGISALGEGFGSST KAALSNIINKIRPGYSGNIVKLIKGAFWCKGINPTDFSASYGSELTNAVKTLQSDAGITA DGILTVQLMAALFDMSAFVVIHQTKKSELIRSMQQYLNSKYWQELGIMPCDGIYQRDTNT ALIYALQKACGVSGANGNYGPGTIAATPTVSVGQKGEVVKIIQYGLFVNGFNKAGDFSGY YSSKIGEEVVAFRKFMKLAPETSTTADLTVIKGLLTSNGNTNRDSIALDTSKQLTDTDIA NFKRYGFSVVGRYLTGSVGVGANKRPKNLTTDEIRRITNAGLAIFPIYEDGGYEVSYFNS KQGYSDAVTAIVNARNLGFPAGTTIYFAVDVDIQDGDIDGTVDPYLRAIHNVFVNCEYEA GVYGTRNVCLHGIEDGISASFVADMSYGWSGNLGFEMPENWAFDQFVEYTIGGTDIDQVA ASGSDKGSKKFRLPSTSTKPISANEALDILGSLLNLTSISFNQEYPLIKTPMLEESVEFE ESFTGTGGNPTFNISNGKLDGANLSGLLGPLFNNQQATVDAVFGKMGEMRLVSSISAGSL TIKTEAPVDGKVSCEIIFNIQKLENQLLTNELSIIFKFKVEPLDLVRTYPIPTTSPTPAP SPQLELEQQIMKVSVGATVAIALCNLLGFVLANIVQFLYYIFVTVVSVV >gi|297149550|gb|ACGQ02000001.1| GENE 426 443339 - 443890 392 183 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851784|ref|ZP_05557172.1| ## NR: gi|256851784|ref|ZP_05557172.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 183 1 183 183 275 100.0 1e-72 MIISELTKKERQMLSKFILRSYCDILHIKESFSAILILNLIYFGTNLIGNYSPTYFDEII TRFVILSDLILIILFGIMFYLIVYIIKKLYPKKQIFFLKKYKYNFPEIMEPAIKEAFDTF ITEKSIFLCKYKYGFENSNFYFLSIKINKDISSARSVILNKKTLTREQKNIIKKLAIKWK TIH >gi|297149550|gb|ACGQ02000001.1| GENE 427 444006 - 444113 57 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFFFMMVPINWLKKWSNLLWQSVKKLVLLMITHFK >gi|297149550|gb|ACGQ02000001.1| GENE 428 444218 - 445675 1084 485 aa, chain - ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 11 485 18 487 487 456 48.0 1e-128 MFWLKYLHIIVISINTILAFYVVFRRKRSVATAWAWLIILLIFPILGFILYGFFGRGLSQ ENLFAINKQNHIGLRNVQKMIPRFQKRAGKSDTAHKAQVAIEYFNQNREAPLSKNNKIKL YTDGHEKFRDLMSDIKNAKETINIEYYSFYNDDIGNQILNLLVKKAQEGIKVHLIYDAWG SFGATSKWFDKLRKAGGKVLPFITSRNMILRYRINYHLHRKIVVIDGRIAWTGGFNVGDQ YLGKKKKFGYWRDTHVRIIGSAALLLQERFVMDWNASITKISQVITFSEKLFPDLNEDEI TENNVATQIVADGPDSELPYMRNGMMRLMLLARKRLWIQTPYLIPDDAMIATWQIIVKSG VDLRIMIPSKPDHPFIYRATQWYANQLTKMGIKIYIYDNGFLHAKTIVGDFDYAVVGSMN QDYRSYSLNFEDMAVFYDSNINNELAQIFEEDMQNSHLLTIEEIQNQSRYLRSLQSFSRL LSPIL >gi|297149550|gb|ACGQ02000001.1| GENE 429 445698 - 446402 707 234 aa, chain - ## HITS:1 COG:BH1677 KEGG:ns NR:ns ## COG: BH1677 COG2738 # Protein_GI_number: 15614240 # Func_class: R General function prediction only # Function: Predicted Zn-dependent protease # Organism: Bacillus halodurans # 12 228 6 218 224 193 46.0 2e-49 MFFSPFLFWDPYFWLILVGLAITMWASWNVKSTFNRYATIPSHNNITGKEAAKLILEDAG IFDVTIQETSGELTDFYNPSDKTLNLSEPVYNSSSIAAICVAAHEAGHAIQDAKAYIPMS FRSKIVPIVNFGANLSMPLIILGVVLSFNQVLIRAGILCFALTLLFQIVTLPVEFNASNR ALKKVKMLGIINPNEYPAGRKVLFAAALTYVAAALSTFLQLLRLILLFADNDRN >gi|297149550|gb|ACGQ02000001.1| GENE 430 446440 - 447363 723 307 aa, chain - ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 68 304 47 286 289 105 31.0 1e-22 MFFNSRKYTEETEHNRIKQSQDPSMFNLISLGILASFPPSRFFLRLHPNKITSYSNYKIE PSTCQQTPILYIHGFRGGDYTTRVLVKEAGKAKHNPHYLKVTCDAFGNFTFEGTWTGDKY PIVQLVFRQRIAGMSAISYYLSRILPFLKKQFKFDTYFAVAHSLGAPAIIATAMRYFKHK KFPVLKKAALIAGPFDGVTYLGDIPNVNYLGEKGHPIAMNFTYLKFILGKKRICPDASIL NIYGNILDETNTDKFISVVSAKSIRYILAPQLKLYQEVEIRGENAEHSWLHDDPFVNDVI NRFLGLK >gi|297149550|gb|ACGQ02000001.1| GENE 431 447439 - 448206 640 255 aa, chain + ## HITS:1 COG:PA1815 KEGG:ns NR:ns ## COG: PA1815 COG0328 # Protein_GI_number: 15597012 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Pseudomonas aeruginosa # 100 249 6 140 148 77 33.0 2e-14 MKFYAVKKGRKIGIFRTWDECKEQVNGFSGAEYKSFSNILEASQYLDLSEDQKRAIMKPS EDNLTAAVEKIKAQSKVMAEKKTSMKKQTTASKSDYSQYEVVVFTDGGCRNHGNVKGGHV QEDDKAAWAYLIEHEGNRISKAGGEFGATNNKMELTGLIEAMKRILALKLNNKKTIFVLD SRYVLRPITEKWIWSWRNNGWKRSKGELKNKELWQELSRLLPQFKNAEFEWTHGHEDNYG NNFVDKALNIYMDKM >gi|297149550|gb|ACGQ02000001.1| GENE 432 448235 - 448999 847 254 aa, chain + ## HITS:1 COG:CAC1415 KEGG:ns NR:ns ## COG: CAC1415 COG0861 # Protein_GI_number: 15894694 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Clostridium acetobutylicum # 7 245 11 236 246 184 45.0 2e-46 MIIFKMYQPFFEIDNWTHVITSGKDWLIILTLILMECLLSVDNAVVLAAQTQVLPTKLEK EKSLLYGLWGAYIFRFIIIGVGTYLIHFWEIKLVGSIYLFYLSFKFFYEQHHPEKVKQKH ERDSHHKSKKHIFSLFWRTVISIELMDIVFSIDSVLAALAISENPVIILIGGMIGILCMR GVAEIIIKLMEHIPELEPMAYILIGLIAMKLLLDLPPLEFEIPNNIFAIIIFIVLGITIL FHFWRIKKHGPKHF >gi|297149550|gb|ACGQ02000001.1| GENE 433 449051 - 450010 1198 319 aa, chain - ## HITS:1 COG:SP1027 KEGG:ns NR:ns ## COG: SP1027 COG4086 # Protein_GI_number: 15900898 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Streptococcus pneumoniae TIGR4 # 6 311 10 322 324 115 32.0 1e-25 MKKFMAFLVAAIIATGFSFANKNTAKADDDTTPVVTLGSSLTSSQKQGTINTLTQSLNGA SYKTITVTGSDLVKYLNPSGETFTNSSGVWSSAMIQKTSSGSGINVKILNYNGSNNITTI TANQYKNAALTAGITDANIYITSATPIDGSGALAGIYAAYAQSGNTLNQSQVNAAQSELN TLSSITQDNKNKDGYSDAQLNNAVAGAKADMAKYGSNITNNQITTIVNNQLEKNNLTNVI TNSQKQQIINLLITIKKSGALNSNSFKEQAQKLSSQIQEGAKSIFNKLNSQDTKNWIQKV IDAVVNFFKGLFGGAIILN >gi|297149550|gb|ACGQ02000001.1| GENE 434 450176 - 450988 803 270 aa, chain + ## HITS:1 COG:BS_yveT KEGG:ns NR:ns ## COG: BS_yveT COG0463 # Protein_GI_number: 16080481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 4 223 3 222 344 120 31.0 3e-27 MQQPKLTVIMPVYNLAEYLPRALDALLHQDESNFKLLIIDDGSTDKTSEILQQYRPKFPY FTVIKTKNGGPSSARNIGLSQVDTPYFTFHDGDDFVDPGYVSFFIRAFKLHPDCDMVSCG YYIDRPKGRSHVVGKPESGVLTKGNAFMKLTDIFASPMKGYCWNKGYRTKLVRKHNLLFD ADVAFMEDQIFNVKYISIARKVYYTQKPYYHYWQRSDSIVHKPNLKKTSDLLMGNYLIWS KIIKSIMKEREQEKAKKKANKILLKNSNID >gi|297149550|gb|ACGQ02000001.1| GENE 435 451007 - 451663 684 218 aa, chain + ## HITS:1 COG:SMc04165 KEGG:ns NR:ns ## COG: SMc04165 COG0596 # Protein_GI_number: 15965747 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 2 178 27 226 287 85 29.0 7e-17 MKVTVNNVELYYQKLGKGEPLILLHGHHLDGGMFDKILAPLSLYYTVYVLDMRGHGLSEG DAAEHYQEEVSDLAAFIRKLDLKQPYIYGYDAGGVVTLMLASQYPNMLKKAIVAGVFVHG AGIKPYHYAVEGVKRFIKRDPDSQVELTETLIEPEKLRKIITPTLCVVGEKDWVKVEHVR WYSQIMKNARLVIMPRQTHDSYTVHSFKMLDLIKDFCR >gi|297149550|gb|ACGQ02000001.1| GENE 436 451692 - 452066 504 124 aa, chain - ## HITS:1 COG:AGl3168 KEGG:ns NR:ns ## COG: AGl3168 COG3759 # Protein_GI_number: 15891701 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 7 115 25 130 137 58 37.0 4e-09 MRTFSIVLLLIIAIEHLFIAFLEMTANPKKQAKAFGVDVEFLKQADARISMANQGIYNAM LAVIIILGQWVFTGTNTIYANLLFSSFVSVVGFFGGLTVNQKIYFVQMTPGLIALIISCM SLYM >gi|297149550|gb|ACGQ02000001.1| GENE 437 452208 - 453194 1400 328 aa, chain + ## HITS:1 COG:lin0509 KEGG:ns NR:ns ## COG: lin0509 COG0462 # Protein_GI_number: 16799584 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Listeria innocua # 9 321 1 311 311 281 45.0 9e-76 MNKEELHQMLHPMKLIGLGGNKALNEKIANILHMPLLETTVHHFSDGEIAVNIAETVRGC DVFVIQSIQDPVNENFMELEIVCDALHRASAHRINCVVPYLAYSRSDTKSRSREPITAKL VANLLQLTGIDRLITLDLHASQIQGFYNIPVDHLHALPLLAQYFLDNGIATSDDDNVVIV SPDHSGTKLARNFATNFNAPIAIVDQRGAHYDDSVHDMIGDVKGKKCIIVDDLIDTGSRI ASSTHSVLAAGATKVYVAASHALLSHDAVDVLNKLPIEQIVVTDTIKHEKYPDRIVRVSV DQLLARGIDYVYNDRSIHQIFDEQNRIK >gi|297149550|gb|ACGQ02000001.1| GENE 438 453323 - 454018 720 231 aa, chain + ## HITS:1 COG:no KEGG:Ldb0181 NR:ns ## KEGG: Ldb0181 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: L.delbrueckii # Pathway: not_defined # 4 231 1 226 226 254 57.0 2e-66 MTIVARHKNMKRRRIILDNTFKLIREYGIDNVSLQMIAEKSGISKSLLQSYYPHKQKLTT DIMHNLFNTLWDEVYTNVVDQKQNLFTQVKAFCYIIGSLGIRDNGLDQVIRQAFSDNTTL DSWSQMLNSWIVERNLISEFTPDQIERIRSGISFIAAGGGRLYLKRKTHNLNPEEIADFM TSTLMGVFMNYDTSEIKEVLEEGHQVIRNADIGSIHFAIDHMFDEGKEIYS >gi|297149550|gb|ACGQ02000001.1| GENE 439 454029 - 454862 821 277 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00124 NR:ns ## KEGG: LCRIS_00124 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 277 1 274 274 218 44.0 2e-55 MAETTRSEIRRLDAEQNRSYKRSFIATIFVVVSLILFSFTLMNPSFMKGITRTSNGQAVV DAQINAKFDRLAVLVNGQKNSSSNLLTADQTQVLSDELIDYTLGIHWFKTDNANLANKIY STLNKEINSNSATEAQNVLKSLKKQGDSSVYTIISAFELADVTQQANLVTMFLIINTVLV IVLILSLISTLMEMREKLRLKAIIHEITGAGMWTGALMIVIYVILAMIPLIFNVESISIL DFGYWLELASSVFLEYVMFGAIIFVINTIPWQLTSTK >gi|297149550|gb|ACGQ02000001.1| GENE 440 454886 - 455158 261 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297205418|ref|ZP_06922814.1| ## NR: gi|297205418|ref|ZP_06922814.1| hypothetical protein HMPREF0526_10446 [Lactobacillus jensenii JV-V16] # 1 90 17 106 106 135 100.0 1e-30 MLLFSILVLIILANSIRTKYSDNPTIKFLKKHRGLILTAYSVLVFSYFVLKNGFNVLTST YIFFILIGIFYLIHDRNKINERIVEQYKKR >gi|297149550|gb|ACGQ02000001.1| GENE 441 455216 - 456715 1781 499 aa, chain - ## HITS:1 COG:no KEGG:LJ0107 NR:ns ## KEGG: LJ0107 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 492 1 506 508 473 54.0 1e-131 MNFKRKLATISASIMLLAPTFTTTIATPIASAATFTSSELNTIRSFQNRYASLDQTPYSK SNLYTITPNLTEPFSAGQISQNYIDSQLAWINYYRALFGLPSVTASKTENQNAQIAAAVM AAIGANPFQNQHGLPNESKPSYISESDWDTAVDLTKNSNLNFNILNQSAGDVITDFLTDR NNLTGGDTGHRAWILSPWLYTTGIGAAYGANGYRYSVQRVINLSDVMKTAAKSTITYPSE GVFPIELLSGQNIYWSFYLANEQIKSTPTITVTDLDTGQKVTATDVHNYSSSFYGNFSTN ITYKPGNISLISGHQYQVNINGIYSYSFKLFNQVAANQPSLNTTTTKSSTNVQNQVEQIE NNQSSTPAEKDVKIKSALLLKAEEISDTLMKDRITNTAIFGRSYQDGKNFYNLGKNQWFR DFYRVSNPLISAGILDSDDNMLDKQIYTSPYANLQTKTYAYLKPQTSYAYGQSIIIGGIT WYYLGPNQWVQKIPSKNPA >gi|297149550|gb|ACGQ02000001.1| GENE 442 456920 - 458005 1289 361 aa, chain + ## HITS:1 COG:STM0380 KEGG:ns NR:ns ## COG: STM0380 COG1181 # Protein_GI_number: 16763760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Salmonella typhimurium LT2 # 4 356 3 360 364 310 45.0 4e-84 MTDKTRVGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVW DDPTYTIKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDD VLAAAVTMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYNYVSKKLGTDLFVKP SNQGSSVGISHVKSEADYLPALAEAFKYDDKVLVEEAIDGTEVETAVLGNDDIIVSGVGQ IINAKGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSML RTSDHEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIELAVERHNHKKTLLHKP E >gi|297149550|gb|ACGQ02000001.1| GENE 443 458017 - 458736 977 239 aa, chain + ## HITS:1 COG:no KEGG:lhv_0144 NR:ns ## KEGG: lhv_0144 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 6 238 9 244 246 188 55.0 2e-46 MSLNEKELVNPSTAAAELKISVATLRKYSLIVEKTTGDSEYYARTSQRARLYSAKNIEDL KAFHKLAKQSGLTLSDAAQQIFAVSDKKVEDQKKADKKIEEQANALMDSKQVVKLLSALQ QTIVNQNQAIADLQKQVAEVQKQNAALIDSQKQLAAPQATADLPEMDDDFFDEEIDEKTP EQKRSEVAKDMSKSEDEVRGAILKKAQENAAKRAKENVHRTLADMQLPKKKHWWERFLG >gi|297149550|gb|ACGQ02000001.1| GENE 444 458811 - 459911 1017 366 aa, chain + ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 10 360 4 362 370 179 30.0 1e-44 MMWKKQITKKNLFTLFVLFLGLIITSWVYFKPSSYADTAIIVNKNLNDKVTDKTEDEYKN YDEKRVQTLKLKVISGKYQGKIYTVKNHYVKSQLETQAYRSGERVLVSFNKGQISLLSPK RDWILALATTIVLTLLLIIAGKNTFWLVLSLVLSWIIFYFIIKFDIQENGTEIFAIYGLG VVLFAFVSLLIVQGFNKKMLATYFATLVGVFVSFGICYLIMKLTGEAGMKYETVDYATQS PRSLFLAQALLGVLGAVMDEATDIVSSLYELTQHKKDLTAKQLLLSGRTMGQEIMGPLIN VLVLIFIAEALPMTILYLRDNNTLAFSFEFTLSLGAIQSLMSAIGICLTVIFASLTSLVF LKKRGE >gi|297149550|gb|ACGQ02000001.1| GENE 445 459913 - 460668 792 251 aa, chain + ## HITS:1 COG:L17781 KEGG:ns NR:ns ## COG: L17781 COG5438 # Protein_GI_number: 15672790 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 21 249 21 249 253 115 30.0 7e-26 MTTLTALVLLLFALMVLIGGKTGFNSFLSVMVNGILLVLVALLISWGINILVLTLIFIPL KLAAIIFLGTHDMIVAKNSFYAAILVATATILIIICLQYFAQAAGFGDEAGEELVGLSPY PGLSYPEIAITVAIFSTLGAISEASVAMSSGILELKKHNPEITRIQLEKSGANIGKDVLG TSVNTILFGLFGSFLPLFIWYMRLNYPLGKILNDKLFVNEVLIMVYSIIGVALTIPLTSY LLAKKVSKEKA >gi|297149550|gb|ACGQ02000001.1| GENE 446 460719 - 463697 2750 992 aa, chain - ## HITS:1 COG:alr4773 KEGG:ns NR:ns ## COG: alr4773 COG1501 # Protein_GI_number: 17232265 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Nostoc sp. PCC 7120 # 77 606 83 678 779 119 24.0 4e-26 MAQTIQGRHQLGALVGAQKTENFYELHYSSGETARLYILSDGIFRFYLDPKGLFETNALD LNLSSFDNSYHEKSNAKATSEAFIIQTGSIKLVFGQKPATLTIFDEQVHRNRLSQTSPLE IGDGASIEFLKQNQNEYYYGGGLQGGHFSHKGKKIQIKDLKVAGNGGVINPIPFFWSNAG FGELRNTNAIGTYDFGSKNSSNCLLSHACEEFDTFYLIGNSPQSILQKLYQLTGKPFNLP KYALGLGYLGNFLDFTWKKSDNTNRTATKFEDGGYYEKTTNPEDIATKASLNGEENAIFS ARAMIDRYQKMKFPLSYFIPDFGSKTPAKLDELQQFNEYALSQGVMPGTAHVETLLANTQ LAYTDKQNEAKTYSALANSLKKQRPFVLTGNGNAKSLHTSALAFGEDGGEWDALKDQIAS LLGLSLSGQPISGCAVDGIRGGGNATVSVRDFEWKSFTPLLFNMDGQGTTPKLPFVYNNK ISKINRAYLALRKQFSSYLYTLVKKAQAGDLIMRPLFMEFPHEKTNYSDEWSSEFMLGKD LLIAPITDGREDEKGHAIKDRLYLPNHRTIWIDLFTGKKYPGGRVYNNLSFPLWHLPVFI RSGAILSQGNRIFTIYPQGKTVTEVVNDNNLSESETYTTTITSNLNDDRLHLSFAPVENL HEDAAKDQATYLNILIDHYPGNVSLKINDEPVRLNESGSFNAFLTAKEGYYFNTNFIAAP AFSDFTKQRQTALQIKLAKRDITDTKIDIFIDNFHYVKANEAHAIIDSALRAPGKPSINP DKTTAHSLTAIWPNDAQVQIEVNDLIYDGISGKNFTFNNLKSETLYKMRLRYLSHNKVSE WSDYFGGRTKPSQYKFAVKNVQMHSSMLSQEGHDVALATDMLLASEWRTADKMTNDGLTL TFNFAKEEELSRMVYLPRTVDQVGRITKASLAISKDGIHFELYRNEINWPNDPKNKVVGL RDVKAKAIQMHITESSDGLIAAKQFYFFKPKK >gi|297149550|gb|ACGQ02000001.1| GENE 447 463842 - 465002 1552 386 aa, chain + ## HITS:1 COG:SP2056 KEGG:ns NR:ns ## COG: SP2056 COG1820 # Protein_GI_number: 15901876 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pneumoniae TIGR4 # 1 383 1 382 383 375 50.0 1e-104 MTYYIHAAKFFLKNKTELGGYLEITDDGKFGFYYPENEKPNGEIKEYPDKAVAPGYVDTH IHGLLNEDVMKSDWQGINKISEGLLAAGVTSWLPTTITASDETLTNICKMFADHKDQETG AKIQGIHFEGPFFTPEHGGAENPKYMVDPDIKLFDGWRKASDNMLIKISMAPERKGSCEF IREAVKEGVTVSLGHSSSNFEDANKAINAGASMFTHTYNGMNYLSQHEPNIIGAAFASRL TDCELIADGHHVEIPALRALIQAKGCEHICLITDCMQAGMMPDGNYMLGELPVYVKDGMA RLVNGNNLAGSILLLKDAVKNLVDWDIVSREDAVMMASYVPAKSSKILDKCGVIAPDRAA DFLILNNDMTLVETYLDGISRYKVEK >gi|297149550|gb|ACGQ02000001.1| GENE 448 465002 - 465835 944 277 aa, chain + ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 277 1 277 285 142 30.0 5e-34 MIFEKSYNNSAALVKDEAGVEWIVIGKGIGFGKKAGDIIEESKIERRFKNTDQDTTLKTV TSLSSLALSLTNKMVELSQIKIGIKFDNYAYTSLADHVDFMLTRNKENMILDNQMMQWEV VKLYPKEVAVARELVAMVEKEAKVTLPESEVVFLTYHLVNVGFDKETVQETMELSKLLDG ILRIVSLETGKSLDRTSFNYSRFVTHLRALLIQIIKKQDRKNDGLDPVFGQLMKQKYPET SKVVEKIAYFIKEKTGYQLGEDDEVYLILHVWRVSNR >gi|297149550|gb|ACGQ02000001.1| GENE 449 466034 - 468001 2345 655 aa, chain + ## HITS:1 COG:lin0026_2 KEGG:ns NR:ns ## COG: lin0026_2 COG1263 # Protein_GI_number: 16799105 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 89 475 4 389 399 381 53.0 1e-105 MAYEDLSKKIIAGVGGKDNVVSVVHCTTRLRFKLKDEKKAHDDELKNTDGVVTVVKSAGQ YQVVIGNEVADVYDTLVKVGGFSDGGQVDDDYVDTSNMSIADKFIDIVSGIFTPFLGALA SAGMIKGIVAACASLGLLSKTSGEYQILYAIGDAFFYFLPILIAVNAAKKFKVEIFTAMG IAATMVYPAIVAISSSKTTLMTVFKGTFLQSDIHTTFFGIPVIMMNYSSTVIPIILAVWF ASYVQKWVKSWVPAVVRTFLVPFFTLLIVVPLTFLVIGPIATWFGNLLSLITVSAYHISP ILAGILMGAFWQVFVIFGVHWGFVAVFFANLAANGFDQILDLSLAASFAQIGVVLAILFQ TKNEKTKAIAFPAFISGIFGVTEPAIYGVTLPRKKPFIISCIASALATIIIALGNVKLYM MGGMGIFVIPAAINPKTGINSSLYYLIAAMVVAFILGFVLQMLFGKDAVDAQDQEHIAQD VQTAANEATEIKKNAAIAKTNSDYNKPTTLVSPLNGELIPLSEVKDEVFSTKAMGDGAAI RPSEGILRAPADGHVVLVFPTGHAIGMHTDDGAEVLMHIGMDTVNLNGKGFETLVKKDQV VKAGEPLVKFDIEAIKKAGYDVTTPIVITNTKNYHKISLTKQGVVHIGDNVLDLD >gi|297149550|gb|ACGQ02000001.1| GENE 450 468012 - 469499 1833 495 aa, chain + ## HITS:1 COG:CAC1405 KEGG:ns NR:ns ## COG: CAC1405 COG2723 # Protein_GI_number: 15894684 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 11 494 7 472 473 522 53.0 1e-148 MSTKTSFPKDFLWGGATAANQLEGGYDEGGKGLSVTDITTAGSLNKPRMLTYMLNGKAGE TPAMPGAGLPQGAKGAILPGEYYPNHVAIDFYHHYKEDIKLFAEMGFKTFRMSIAWTRIF PKGDEKEPNQAGLDFYRKVFEELKKYNIEPLVTISHYEDPLYLSEKYNDWQDRAMIDEYV KYAKVLFKEYKGLVKYWLTFNEINCSLLMLNMFGQKINDDAVYQHAYQKLHYQFVASARA VKAAHEIDSDYVVGNMICGIVNYPLTPDPKDILANRYAWEQNIFYCGDVQALGEYPSYSK RLWNEHNVHLDITDQDLADLKAGKVDMYTFSYYMSNVITTHETKDKVGGNFAAGAKNPYL KYSEWGWATDPMGLEYYLEVMNDRYHLPQMVVENGLGAVDKLTADNEVHDDYRIDYLKQH IQAMKAAIDNGVDLIGYTTWGCIDLVSAGTGQMSKRYGFIYVDRDDEGNGSLKRYKKDSF YWYKKVIASNGEDLS >gi|297149550|gb|ACGQ02000001.1| GENE 451 470003 - 470254 81 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851807|ref|ZP_05557195.1| ## NR: gi|256851807|ref|ZP_05557195.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 83 1 83 188 98 93.0 1e-19 MVISEFTLKEILQVIWANTFHINTKKSKILQIILGILILLILIVFFLMYYNSREFVTLNK FSRIVFALLYTLYPLPMLYLQFF >gi|297149550|gb|ACGQ02000001.1| GENE 452 471535 - 472395 809 286 aa, chain - ## HITS:1 COG:L0229 KEGG:ns NR:ns ## COG: L0229 COG2207 # Protein_GI_number: 15673492 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Lactococcus lactis # 31 282 27 271 327 73 26.0 3e-13 MPMYEHEIVKPVGQLSIWYHIFDDNQAWNAYIPAHWHRGIELSYIERGSIDDFRIGDAHF SSSSGKILVVNTQEIHSIKTQVKQNDLALSIIYPYSYIEGLFPKINNYRIEINHPENFTE LQKLAYLNLKSQLIQFIATAQLNSNDRNIRLSIISLEILDNLLNNFVQKRKQLPAKKEVI TQRLQEIVEYITTNLQQDLSLEIIANECHISREYLARFFKKNMAMTVAEYIRYRRAISAR KDLLSKNATLTEIAIDNGFSGIRSMNRALQEFYHEDAKEIRKREQK >gi|297149550|gb|ACGQ02000001.1| GENE 453 472425 - 473309 1035 294 aa, chain - ## HITS:1 COG:DR0821_2 KEGG:ns NR:ns ## COG: DR0821_2 COG0657 # Protein_GI_number: 15805847 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Deinococcus radiodurans # 41 145 1 103 242 85 40.0 1e-16 MADLPTSVDELRAIFKKGDDARDAGLPTNIPEVERIDNLSYGPDEKWNLLDIYLPKNRTG KVPTIISIHGGGWVYGTKETYQFYGMSLAKMGFGFVNFNYHLGPDVVFPGILDDVQLLME WIENHGAEYDLDLKNIFLLGDSAGGQMTEQYLAISTNDDFRKLFGYQPLSFKFNAAALNC GAYFMLDKEQTQGAVAAYFAPEAIKDKKELLNTEQYLTQNLPPLFIMTANEDFLHDNAIR LDGFLRAKGIKHELHIYGTPDKPRQHVFHCNVRDEIGQQCNKDEIDFFKQYIVK >gi|297149550|gb|ACGQ02000001.1| GENE 454 473512 - 474711 1251 399 aa, chain + ## HITS:1 COG:SP1600 KEGG:ns NR:ns ## COG: SP1600 COG0477 # Protein_GI_number: 15901440 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 11 368 7 364 383 111 23.0 3e-24 MKYNKNSLIFKIALLSISTLLMIAPAVSSALPLLYPAFSGVSKASVEGLITLPNIGIILG LILSPVLIRFLGQKKTVLSGLVLALISGTFPMYASSFMMIAISRLLLGMGIGLFNSLAVS LIPQFYNDDEEETASMLGFQNVMGALGTALVSFILSWLVTINWHMAFGIYLLIIPVFILF ALFIPNDKANKTITKKAAPKNREKINSKLVVIWTVFFILFIFYMPLSYKLPLLVTSEKLG SMSQYAALTGITGLCGIPLGASFGILFKKLHDKIFPIGFLITAIGFLLFGFATNLVMIFA GNIVLGFGAALAVPYLYNWLSWAAPHGSVNLATTIALVLINIACSVSPYILNSLSGVLGN STPRFAMFICAAAFILLTVYGLGHYLRVHRINIKTKHQF >gi|297149550|gb|ACGQ02000001.1| GENE 455 474820 - 475731 1097 303 aa, chain + ## HITS:1 COG:lin0770 KEGG:ns NR:ns ## COG: lin0770 COG1940 # Protein_GI_number: 16799844 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Listeria innocua # 5 290 4 282 288 171 34.0 1e-42 MTQYLAFDIGGTNLKYALLNNAGEIIEHDKVPTPTDNLADFLKAVYKIADQYQGQFEGIA FSAPGKVDTKANTVYFGGALPYLDGVNFQRLVGDKYHVPVGVENDGKAAALAELWLGELK GVNNGAAVVLGTGIGGGIILDGRIWRGSHFQAGELSFMQTEGDKSGFERFGCTYGSAVKM IESVNKLIGNSDLKDGYAAFDAINNGNDQALKILERECKEVATIIFNIQSVVDLDKFVIG GGISAQPKVVEAINKQYRLITNEVPFIAKMLTRPTIVRAKFMNEANIYGALYALLLKLNG EDE >gi|297149550|gb|ACGQ02000001.1| GENE 456 475757 - 475909 103 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238854363|ref|ZP_04644705.1| ## NR: gi|238854363|ref|ZP_04644705.1| alpha/beta superfamily hydrolase [Lactobacillus jensenii 269-3] # 3 50 205 252 252 99 95.0 5e-20 MNVNNYASIRYHAIWPQSEIHLIAESDHGLHQNRQEVYNRVIKVLCNDLD >gi|297149550|gb|ACGQ02000001.1| GENE 457 476150 - 477493 1784 447 aa, chain + ## HITS:1 COG:CAC0533 KEGG:ns NR:ns ## COG: CAC0533 COG1486 # Protein_GI_number: 15893823 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Clostridium acetobutylicum # 6 446 2 440 441 549 56.0 1e-156 MVKDDRKFSVVIAGGGSTFTPGFILRLINQQDKFPLRQIKFYDIDAERQKKIGDACAIII KERAPQIKFSYTTDPEEAFTDVDFVFGSIRVGKYEMRSHDEKIPLKYGVNGQETTGPGGM AYGLRSIPAIIQIIDYMEKYSPNAWMINYSNTIAIVSEACRRFRPKSKVINICDMPIDIM TRMARICGLKDYHDLDFIYYGLNHFGWWKEVRNYKTGEDLMPKLKKYVRENGYYVGGDFD KDTEASWVETFKKAKDCYALEPDTLPNTYMQYYYYPQYEVAHADPHHTRTDEILEYRQKI VFGECKRIVEAGTAKNNIWDKNAIHSEYIVDICHAIAYNTHEKFLANIPNNGAISNLPDD IIVEVPCLFGADGVQPIACGEAGRFQRGMIMEQVTCEQLVVDAYEQHSYEKMWQAFALNK TVPDALVAKKILDDMIPVNAPYWPELK >gi|297149550|gb|ACGQ02000001.1| GENE 458 477570 - 479441 2032 623 aa, chain + ## HITS:1 COG:BS_glvC_1 KEGG:ns NR:ns ## COG: BS_glvC_1 COG1263 # Protein_GI_number: 16077887 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus subtilis # 1 447 1 444 452 502 55.0 1e-142 MMQKLQRFGAAMFVPVLLFSFAGIVVALCSLFTNPLIFGSLAKEGTFWNGIWNVVANGGW TVFNQVNLLFVVGLPIGLAHAAKGRAAMESLVIYLTFNYFVAGFLQYWGPFFGVNNYAKD LVANSTNGGLTMIAGIKTLNTSMVGALLVAGIVIYLHNHFFDKKLPDWLATFQGSTYVVM LGFFVMIPFAFLTCLVWPKIQLGITSMQTFIVHSGLVGVWIYTFLNRILIPTGLHHLVYI PFQFGPAVVEGGLQPYWLKHLAEFAQSSKPLSVLAPELGFQLYGNEKVFLVPAICYAFYA TAKKSKKKQTSALLIPAALTSVFAGITEPVDFTYLFAAPVLWVIYSLLSATMNTTMCAFG VVGNMTDGAIGIAAQNWIPLWPHHWQTYIIQFVIGFIFAIIVFFVFKYMILKFNYITPGR EADDEDVKLLSKAEYKAKKAAEKAGSANANDPYIARASAYLELLGGPSNIEDLTSCATRL RVTVVDTNKVASDSAFKQNKAVSVVHHGKALQVIVGLDVAQVLERMQAMMQEQGHDNVAS TEVDPTLEKATGFIDLLGGQSNIEKLMSCATRLRVTVVDPSLVADEVAFKQVGAYNLEIK DKEVDIAVGLETDDIIAKMKEIM >gi|297149550|gb|ACGQ02000001.1| GENE 459 479574 - 480347 667 257 aa, chain + ## HITS:1 COG:BS_yfiA KEGG:ns NR:ns ## COG: BS_yfiA COG1737 # Protein_GI_number: 16077886 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 256 1 249 254 76 22.0 5e-14 MNLQTRIYEKQGDLSGSEKEIIQGLLSSAKENSQLSLKDLSKKLYVSESAIFRLCKKLGL SGYSELKFELSAVSSIKNHPNNNFVKEMADLTTNTIKQFEARNLTNFYIDVQTAKTIYLY STGWQQELLASYISKELFLFGKQTVLLPSALDELKMRGQFFNKGDMLWTISYSGNNSSIV NELKKISLVGDKIKLVSLTKMGSNDLATISDYSFFFQTIDFSYKNNGGGSPRSCFSPAYI LIDLLMNGYFDWQQKKG >gi|297149550|gb|ACGQ02000001.1| GENE 460 480350 - 480841 405 163 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00608 NR:ns ## KEGG: LCRIS_00608 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 2 161 4 165 165 97 38.0 1e-19 MISHLNFSSFLDRIVQNLKLTPKKLLKWYSYVLIFVPLACAALVGLHLVTSATTFSNLLK NQAGLAVGVIIALCDLIIGYFCLLNLEIFYKRKTYRVFMVTQVITQALVGNFMCVIMAIL GIYLSQELPNEKQINLKAKLVINLGTALLLLSFVLLVIIEFKK >gi|297149550|gb|ACGQ02000001.1| GENE 461 480852 - 481334 601 160 aa, chain + ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 12 158 4 150 151 134 48.0 7e-32 MFGLFKRNSKLKVVSPVKGDLIQITDVNDDVFSTKMLGDGFAVEPFDGTIVAPLSGKITT LFPTKHALGITTDKGLEVLIHMGIDTVELKGTPFDVFVKMNQEVKAGDKLAQINLDKIKQ AGLADTIIVVYTNMDLLKSVSAVDPRPLSAGDVVQEIEYK >gi|297149550|gb|ACGQ02000001.1| GENE 462 481613 - 482773 1241 386 aa, chain + ## HITS:1 COG:SPy1392 KEGG:ns NR:ns ## COG: SPy1392 COG0477 # Protein_GI_number: 15675316 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 377 19 397 398 377 55.0 1e-104 MIGSVYAWSVFTKPIAAETGWSIKAVTFAFSLAIFFLGMSAAFMGRLVEKYGPTVTGTVS AILFGLGVMLTGVAIGAHQLWLLYLCYGVIGGVGLGAGYVTPVSTIIKWFPDKRGLATGL AIMGFGFAALLTSTVANHLLSLKSVGLEKTFYILGAVYLVVMLLAAQLIKRPRPGEVPTQ TNLPKNSTGIQMRANDALKTPAFYCLWFMFFINITTGIGLVSMASPMAQGMVNMNAAKAA ALVGIIGLFNGFGRLIWASLSDYIGRPLTYTLIFVVDILCLGTILYLRQELLFSMALCLL LSCYGAGFSVIPAYLGDVFGTRELGALHGYTLTAWAVAGMVGPTIITYTSHGSDYSKTLL IFIIIDVISLLVSFFVKTQIKHMKKA >gi|297149550|gb|ACGQ02000001.1| GENE 463 482821 - 483696 1174 291 aa, chain - ## HITS:1 COG:SP1721 KEGG:ns NR:ns ## COG: SP1721 COG1940 # Protein_GI_number: 15901554 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 5 291 3 295 295 260 47.0 2e-69 MTNAKTVGSIEAGGTKFIVAVQDIESGKIIATDRIPTTSREETFKACAEFFKKNPVNALG IATFGPVDINPDSRTYGYILDTPKPGWSGANFKGFFEKELNIPVYITTDVNGSCYGEYIA RGADNTKTYLYVTIGTGIGGGIIQEGKFIGRNYHPEMGHMMVVRAEGDDYKGGCPFHGAC VEGMAAGPSLKGRTGIPGEDLPRDHKAFSFLQYYVAQMLYNAYMTTRPDVMVVGGSVLNE DDLVQIRKYFDDLNNNYVATPDLDELIVRPAVANNGSATLGDFELAKKLLK >gi|297149550|gb|ACGQ02000001.1| GENE 464 483958 - 485136 676 392 aa, chain + ## HITS:1 COG:lin2339 KEGG:ns NR:ns ## COG: lin2339 COG0477 # Protein_GI_number: 16801402 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 12 387 9 391 402 216 35.0 6e-56 MASKKINNLKITASILYLSYFMMGLRLSMVAQYKPEFATIWHTDVSGVLQVVAAIGLGGI ISILITGPVSDYFGRKFCAVIGHLIWASYFIGLLYAPNLTVAYIIATTSGIGQSFVNSSN FPSLMEIFPKNASIAGIMTKFAINIGQFALPIFAFVVSLLGANYRIVFWGTGLVYLALAF LLICLPFPQHHSKKQLVKQSFAFTDRLPISVIALALIGYTSTAVFLLWVNTYQELAKSYG VSNPIYLQTIYAFGASIAVVFNSFIIKKGIKEVDLLLYYPLFTALSLILTVLIKASWIVS FANLAVGFFAAGGLYQLALTVLGNSYPTIKATAQSWAAFFSALSNLTIFSIASWITGFSG ANSAKYIVIMNIFLSLLGSVLALIVKVCNKKG >gi|297149550|gb|ACGQ02000001.1| GENE 465 485267 - 486976 2073 569 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 67 563 1 477 484 132 27.0 2e-30 MTKQTLQAEANGRNGKIKFDINIDNNEIKDIKVTKSSETPAIFNQVFDKLKNSIIEEQSF DVDAVSGATIMTSALLDSGKNALNQAGVTPVAKESDKTHREVNLDVDVAVIGSGAAGLIA ACRALSMGKNVVVLEKNGYLGGATILNGSNVVATGSNLAQQLFGTEAQEDSSKRLFDDIT RECRGTNYPELSKILVNNIGKAVDFIKEFANLTYQKAETQTIEHSVNRQVEMPSESSYEL IKKIATAFEEKGGKILLDARVEKINSEDGVPVSLVAEGKHQTTNVKFKSLILAAGGWGAK DFKEKRTSIPYYGPMTSTGDYFFFNKGLNLASRNLDWYKVYPHGLEVEPGIAKLTTYSTK EASDMGAIFINRAGNRIVNESDPYTHFRDAIAAQKDQIAFVLMDQRIWNRFYELMLKYGF TADEISHYFALDGKQSPILVKGNLETVANKAGINFENLQHTLSNYQNYAKNGKDPEFGRE AKFMHEYSGDTYYVIEQKLRFCTTLGGYETNSQMQLLNSDMKPVANYYAAGEIIGGANGH DSMPSMMNSWSYASGFLAGTNASDNCNNR >gi|297149550|gb|ACGQ02000001.1| GENE 466 487024 - 487944 200 306 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 1 248 1 242 305 81 26 6e-14 MNLRHLEFFVELAHTEHMARAAESLGISQPSLSYAINSIEDELGVPLFEKEGRNIKLTNY GRIYLKHVEASLDALKKGNEYVAELHDINQGHIHLGFTYTMGQDLVPELVSTFKNNPTAK KITFSYSQDITDKLIEELLEEKLDLVFASKATTPALVAQVNQFHLVNQELLAAVPFNHPL AKKDEVTLSELAKYPMVLYQRNSGLGIFLKKIFDQANIKPKVAVEVQEDHSVLGFVRYNF GVAIVPHMSQLSSGIVKLLPIKDKAVVHPIYAITKANHFLPPVVQRFQSYAEKYCRNSFN EKNTMI >gi|297149550|gb|ACGQ02000001.1| GENE 467 488095 - 489018 1288 307 aa, chain + ## HITS:1 COG:lin0493 KEGG:ns NR:ns ## COG: lin0493 COG0169 # Protein_GI_number: 16799568 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Listeria innocua # 1 299 1 291 291 333 54.0 3e-91 MTNKITGVNGPINGWLDGHTYLIGLMAYPIRHSMSPTMHNNAFAKLGLNFTYLCFEIDNK KLPKAVEAIRTLDMRGSNVSMPNKKEVIKYLDKLSPASEMCDAVNTIVNDNGVLTGYTTD GIGFMKSLEDEGIDIRGKKMCLAGAGGAATPIAVQAALDGVSEIEIFNLNDDKWSQAEKN VKTINEKTNCKASLHHLEDKDDFKRAISECDIYCDATGVGMKPLEDMTLVEDPSWFHEDM TVFDTVYAPRTTKLMKVAQKAGVKHVLNGIGMMIEQGAAAFKLWTGEDMPTDYIRQVIFE NDAKDNN >gi|297149550|gb|ACGQ02000001.1| GENE 468 489055 - 490242 1077 395 aa, chain + ## HITS:1 COG:ECs2397 KEGG:ns NR:ns ## COG: ECs2397 COG0477 # Protein_GI_number: 15831651 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 388 1 389 404 317 48.0 2e-86 MKNKYTPTALALYFNYFVHGMGVIILSQNAANLAHQWGTTETGALAVVSSLGIGRIINLL ASGVLSDKFGRKPFVQLGIVTYFIFFVGILMSPNTVIAYILGILAGMANSFLDTGTYPGL MEIYPNSKGTSNVVLKAFISAGQFFLPFIVSFLAAAHMWYGWSFLIPATILVLTFLYFMF GGAFPDSNSTNKTVEEKITDNNVKTNLWLDGTLFIIYGYISQATFYLVSQMLTQYGQKIG NLSQVTAHSLVSWYSLGSIICVLTTAVLGKKFSEIQFVPIYTLGAFISLALMWLYPTNAS LMIILSILVGFFAAGGVMQLALTVMAEFFPAGKGTVTGFFYTAGSIASFTIPLAINWIGN MRNVMLFDVIIALIGFIDTSMIAMRYKKMFGKLGK >gi|297149550|gb|ACGQ02000001.1| GENE 469 490251 - 491009 712 252 aa, chain + ## HITS:1 COG:lin0494 KEGG:ns NR:ns ## COG: lin0494 COG0710 # Protein_GI_number: 16799569 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Listeria innocua # 1 244 1 243 252 216 47.0 3e-56 MATVKIRNVVLGEGLPKIAVPNVGRTREEIISAAKEIIQAKPDLMEWRIDYFEAGINNFD TLKMVAQELRKVMEEIPILITFRTKNEGGVLSLPEERYLSLLNQIIVNRLGDAVDIELFH DEDTVKRLVKVAHQYNVIVVMSNHDFDKVPSKDIIEFRLKKMAELGADIPKFACMPHSSM DVLTLLMATTVVNETISNPIITMAMGDLGKVSRIAGQVFGSSLSFGAVGQTSAPGQLTIS DLRNAEKYLELH >gi|297149550|gb|ACGQ02000001.1| GENE 470 491055 - 491936 875 293 aa, chain - ## HITS:1 COG:lin0491 KEGG:ns NR:ns ## COG: lin0491 COG0583 # Protein_GI_number: 16799566 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 293 1 294 297 192 38.0 7e-49 MNLRHLEFFVELAHTEHMAKAAENLGITQPSLSYAISSIEKELGVPLFEKDGRNIKLSKY GEIYLRYVKAGLADFSKGNTYISELVDTNSGTVRFGFSSAAREVAPVIVNNFKHENPEQH ISFYFEQDITSIIIKKLLDEKVDLAIVANPDDLEAVNLTHLFDQQLYLAVSVNSPLANQD KISVNDLASYPLITYPHVNCLRQNIDTFFERAGIEPNISMVLADTAPIMNFVNSDFGVAI VPKSELINQHKIKFLDIDSDAAINPVYVATKKDHFLSPATKRILAYIKEYYKK >gi|297149550|gb|ACGQ02000001.1| GENE 471 492101 - 493315 818 404 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 125 402 207 465 466 117 32.0 4e-26 MTGKHSKNTADNWFKKNKILVSLFSAIVILSLFGGFIYHNHIEEQRQATLKYTSKHFNKN VKIFGVKVGGLTINQAVTKINKNAKTAATMTDGKITSMKLDGIQVTDKKTVTKYFNKQHT SLPSDKKWNFADNTLKEAKKKLSEFYNAKTTYKVGGKDFSLEAKNLFKTVEYYGGQFHFT DTSALSAKLSQINSEVSTLDKSYSFTTPNGKTITVTNKSYGWGINTKTAIPAIEKALSNG DTTIDGSNYIYGKGYSTYGTGYTTTNNGLGKNYVVVSIKEQKLWIIKNGVVAVTLNDVVT GTAQTSSGSSDATPTGVWYIEYKQSPSTLTGTNDDGSSYSSKVSYWMPFTLSGCGLHDAS WRTDWSKTAYLKGGSHGCVNIRPSEIKKVWDAVEMHEAVIVYDN >gi|297149550|gb|ACGQ02000001.1| GENE 472 493441 - 495978 2652 845 aa, chain + ## HITS:1 COG:L102360 KEGG:ns NR:ns ## COG: L102360 COG0308 # Protein_GI_number: 15672287 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Lactococcus lactis # 4 841 3 842 846 830 50.0 0 MGKINRFYDTFHPNHYDLFINVNRADKKINGTSTIAGEALSKEISVHQKFMSISKVTQDG EAVPFEVDEKAEAIKITLAKAGNTTISIDYSAPLTDTMMGIYPSYYQLNGKKEEIIGTQF ETTFARQAFPCIDEPEAKATFSLALKFDEHEGETALANMPEIKCEDGVHYFEKTVKMSTY LVAFAFGDLQSKMTETKSGVKVGVFATKAHKAKELHFALDIAKRAIEFYEDFYQTPYPLP HSWQLALPDFSAGAMENWGLVTYREAYLLLDPDNTPLDMKKLVATVITHELAHQWFGDLV TMKWWDNLWLNESFANMMEYLSLDHLEPNWNVWEMFQSSEAPAALTRDATDGVQSVYVEV KDPAEIDTLFDGAIVYAKGSRMLVMVRALLGDKALQKGLKYYFDHHKFGNTTGDDLWNAL STATDLNIAEIMHSWLNQPGYPVVNAFVEDGHLKLAQKQFFVGEGEDKGRTWQIPLNANF EAPAIMTEKELDLGDYKTLREKAGHALRINVGNTTHCVVKYDETLMNDILAEVEDLDSIS KLQLLQDLRLLSEGRESSYAEVVPLLDKLKDSKSNLVNNAIYTTARKLRQFVTPDSDAEN YLKQFYNRLSEEQVKRLGWDVKPDESDEDKLTRPYVLSASLYGGNIDSVRAAHKLYQDHE DDLESLNADVRPYVLINEVKNCGSSALTDKLINLYQTTSDASFKSDLTAAITSSKSESEL EKVVSYFKNADIVKPQDLRGWFASVLNNKLGEQLAWDWIRNEWAWLDKTVGGDMEFTTFI TVIARNFKTAKRLEEFKAFFEPKLDQPMLTREIKMDTKVIETRVELVEAEKVKVNQAVKN LFIEE >gi|297149550|gb|ACGQ02000001.1| GENE 473 496014 - 496676 737 220 aa, chain - ## HITS:1 COG:no KEGG:LBA1844 NR:ns ## KEGG: LBA1844 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 220 1 213 213 189 47.0 4e-47 MNPDYGIILNFKVNANANAQKIVRLARNIGARAISVEGANDLAPYKEACKDYTIELVNAH GIDLTSANAIDELINFKRNEQHAVFNVELDEIGDLLDEQKAALTLLNDWMHWFGHAYNES GKSTLKTADSNSFICENRHAKYQVYVFIKSPLPKTIKVEGFDHKPMRAEWIDERVELPFS FQNKEVTVELSPYPDGIDYKWRVLRIMKHRPEDDIKETQF >gi|297149550|gb|ACGQ02000001.1| GENE 474 496779 - 497081 399 100 aa, chain + ## HITS:1 COG:no KEGG:LBA1843 NR:ns ## KEGG: LBA1843 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 100 1 100 253 115 54.0 6e-25 MKTIISPAKKMVVNQESFLAKTKPDFLEQAKILADFLKRQEADRLKQIWEASDKIVQEGI SQLKTMDLENARTPAIVSYGGIQYQYMAPDLFTEPALIYI >gi|297149550|gb|ACGQ02000001.1| GENE 475 497193 - 497540 220 115 aa, chain + ## HITS:1 COG:STM0005 KEGG:ns NR:ns ## COG: STM0005 COG3022 # Protein_GI_number: 16763395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 107 143 253 257 80 42.0 8e-16 MYHFWDSLIHDKLFEDDDTVVNLASKEYARAVIPYLHEGEKFITVDFLEKRKDQWKMIGT HAKMSRGEMVRWIGENQIKTPEELQAFSDFGYKFDELTSSADKYIFKTQYDFKRH >gi|297149550|gb|ACGQ02000001.1| GENE 476 497527 - 498279 1019 250 aa, chain - ## HITS:1 COG:CAC3665 KEGG:ns NR:ns ## COG: CAC3665 COG1073 # Protein_GI_number: 15896898 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 23 243 32 258 265 124 34.0 2e-28 MSIFTIQRDGLNLVCEREDPFGEKYDLAIIMHGFTANRNTALIKEIANKLRDENVASIRF DFNGHGDSDGAFENMTVWNEIEDANAILSYVKSDPHVNHIYLVGLSQGGVVASMLAGLYP DLIKKVVLLAPAACLKDDALKGNTQGVSYNPKKIPDSVPFRNKNLGGFYLRVAQNLPIYE IAQNYCGPVSLIHGTNDQVVPAKYVEKYQAIYQNSELHFINGADHRFSDTYQNIASDLTA DFLKPDFSVF >gi|297149550|gb|ACGQ02000001.1| GENE 477 498354 - 498953 716 199 aa, chain + ## HITS:1 COG:CAC1385 KEGG:ns NR:ns ## COG: CAC1385 COG0406 # Protein_GI_number: 15894664 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Clostridium acetobutylicum # 1 189 2 184 191 94 31.0 1e-19 MKLTFIRHGQTDLNKDNRIQGGEIDQPLNETGIKQATVAASHFNPEKYDLVFSSPLQRAK KTAEIFVKGKKEINFDERIKEMDFGEWDTLKVDDLIKKYPKGFNQARYVTNGYLRYAPSG ESFEDVARRGSEFIDELISKYPDKNILVVCHGTLIKTLVAHYFSNGNLEVFEQVDNCAIS EFEMTEKLAKVIRYNQILY >gi|297149550|gb|ACGQ02000001.1| GENE 478 499072 - 499596 313 174 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 72 1 72 189 65 47.0 3e-11 MVKSTFQNLNQEKKKRVTDALITEFSSYSLADAQVARIVKSSGIARGAFYKYFDDLTDAY EYVYQLAMKDIHAGLKPSKAFDVELLYKTTADFVGKSEKSPYLALIKLHLSKNEAMLTHD FKQKAVRLKDLDVKTWSAMVLSHETIKLVLFDPDHKNIYLERFKHSLKLLNEEG >gi|297149550|gb|ACGQ02000001.1| GENE 479 499599 - 500657 1101 352 aa, chain + ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 351 2 357 357 223 38.0 5e-58 MYLAFKEIKKEKLRYGLIVFMIFLISYLIFILSGLAFGLASENTQAIYAWQTKKVILNQN SNVSLSQSLITKQDVPKKLSTNEALVGQTPLVIKNKKKSTVSAQFIGIKANQYIYKNLAI TAGRKAKNSNEVVVSQTLKNKGYKLGDKLTLNGSTDQYKIVGFAKDAMINIAPIIYGNLA TWRKLRSVNNEVVASGIISKSSNFKVNSKNLKVYELKTFLNKLPGYSAQNLTFGLMIGFL FIISLIIVAVFLYILTMQKLPNFAVMRAQGIPSKTLIGFTVSQSFILVLFASLLALILME LTVFALPAAVPMKFSPSIAIAGLLGMLIMGIIGSLIPVRSILKVDPTMAIGG >gi|297149550|gb|ACGQ02000001.1| GENE 480 500658 - 501335 233 225 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 202 1 199 223 94 30 9e-18 MMSTIELKNIKKIYGSGNAQTIALKGVDFEAEKGEVVLLEGPSGAGKSTLLTIMGSLQKA SSGTILFNGENITKFSDKQRDNLRLNKIGFVLQAYNLVPFLKVKEQFELVDRVKKAGNLS SDELTDLVKLLGIDQLLNKYPNELSGGQMQRVAIARALYANPQVVLADEPTASLDSDRVK EVGALFQKLAKEQGKAVILVTHDQRLEAYSDHTYDMLDGKLTKRK >gi|297149550|gb|ACGQ02000001.1| GENE 481 501375 - 502787 1410 470 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 467 3 473 474 288 36.0 1e-77 MITKHGRSACTSILIGKKASISGSVIIGRNEDCKTAWPKHLKFNPATICAHNHFSSNDNK FEMDLPDRSYAYSSTPEWTDKYGVFEEDGINEYHVAMSATESAYANGRVLAVDPFDTEKG ILEEAMVTCVLPYVKTAREGVERLGKIVTEHGAAEADGILFADPDEAWYLEIGSGHHYVA QRIPDDSYAVVSNQLAIQEVDFTDHLNFIFSPDLPNFVYQNKLWPKDKPFNFREIFGTQD DSDLHYNTPRVWAGQKLLTPSKKKEPQDFYLPFLEKPDRPITIQDAQRVLKDHYQNTPFD LTNKKNSSNATFRPISVATTQESHLLELNGESMTQWLCMGITSQGVYVPFYPQGTKTPAM WDKGTETYSSDSAYWVFKLASVLADRDWGKYGKDLSTTQDNTSKELMQIRHEYDQKLLTI SDREKEIELVDEANEKMANLAIKNYQTLIAQLVTKQTASSPLSFTMDPNL >gi|297149550|gb|ACGQ02000001.1| GENE 482 502833 - 503393 151 186 aa, chain - ## HITS:1 COG:no KEGG:lhv_1083 NR:ns ## KEGG: lhv_1083 # Name: not_defined # Def: putative transposase # Organism: L.helveticus # Pathway: not_defined # 1 186 100 285 285 368 96.0 1e-101 MNKKVDLNGHFLIIDSFPVPVCQPIRNYRAKIFRGYANIGYKATKKIYFYGFKVHAIVSD DGYILDYVVTKASVHDAKETVELLENAHPSNYYLLGDEGYLGKELHQQLKQMGYELWTPY RKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAY CLERFN >gi|297149550|gb|ACGQ02000001.1| GENE 483 503842 - 504051 313 69 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01861 NR:ns ## KEGG: LCRIS_01861 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 2 68 6 72 80 78 62.0 6e-14 MEDKRITLTTDYANSSINIDFSDNLTDEGERGYILSASFLSYAISEGLSKEEIVEMISNG YDQFTSENN >gi|297149550|gb|ACGQ02000001.1| GENE 484 504119 - 504661 701 180 aa, chain + ## HITS:1 COG:FN1004 KEGG:ns NR:ns ## COG: FN1004 COG1309 # Protein_GI_number: 19704339 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 156 1 154 188 64 28.0 8e-11 MARKKEIRRQQILDVAYNLALSEGIESLTARNIAQAGDFSTQPIYLEFKNMEDLRTQILE IISVNLKTKILQKSYTGGALIDLDLSYINFAKEHIDLFRAMFVDGKLGSAIIADTLLNLG IEKFNEEYSEYDLSEKKIKQVVMANWISATGIAALIINQVATFSEEQIINVLKAQIFGCY >gi|297149550|gb|ACGQ02000001.1| GENE 485 504821 - 505357 611 178 aa, chain + ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 163 1 166 187 144 44.0 6e-35 MKILAIVGSNAENSYNRKLLLVIKKRFTKHDIELAEIKGLPLYKEGQDTPQVVSDLAEKI ETADLVLIGSPEQQHSVTSALKSALEWLSSNLHPFKGKPVFIVGTSPLAQGSGRSQTRLK NILAAPGFSCPVFNGDEFMLGLASQAFDEDGSIKDERTLEFLDHFFGEVEEWYEQITK >gi|297149550|gb|ACGQ02000001.1| GENE 486 505370 - 505918 813 182 aa, chain + ## HITS:1 COG:SP1471 KEGG:ns NR:ns ## COG: SP1471 COG0431 # Protein_GI_number: 15901321 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 182 2 181 201 146 45.0 2e-35 MKLLAVVGTNADFSFNRFLAKYIAKRYGDKAEIEVAEINTLPLFNRESSGNKNVAEWREK IKTADGIILTTPEYDHAIPAALKSALEWLGSHAGADLMHMKPAMVVGTSYGMMGAARAQE EAREILLAPDMSANVLPGNEVLIGRAADNFDKATGDLTNQTYIDQLDTVMDNFIKFVAQN QK >gi|297149550|gb|ACGQ02000001.1| GENE 487 506034 - 507068 958 344 aa, chain + ## HITS:1 COG:L143292 KEGG:ns NR:ns ## COG: L143292 COG3589 # Protein_GI_number: 15673111 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 339 1 342 353 248 40.0 9e-66 MLGFSINLGEPLTAQTHNYILKMRNVGFKGIFTSLQAPEQDSEQVLKGLTELKKWCHDLG LELVGDISKTGMQKLGLETDITSLKSLGLTGVRIDAGFDNEEIAKISKELRVALNASTIS EEDVICLRENQANFDHLEAWHNYYPRPNTGLDQGWMIERNKWLKNYGFKVVAFAPGDGIK RAPIFESLPTLEEHRNVSSFFASLDLFDMGLDHVYIGDCDLSEESFEQFSEYLDKKAILL HLTRKNSILVKHSWHQRADLSRDVVRLEEGRIRQLFSQVELKSGKRPKGTITSDNERYLR YEGELEITKKDLPEDERVGIVDKVADFDLPLLDIINSNQMIIFK >gi|297149550|gb|ACGQ02000001.1| GENE 488 507169 - 507951 693 260 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 6 259 46 297 298 119 30.0 5e-27 MQAKVLPLKTIRNPRDLGGYLTQDGHKVKMQRLLRTGRICNLSRHDQQYLINYGLRKVID LRSEKERKQDPDTLISGTKHFNISISPEDNTEAGTSFEDLFKKFDANPTAAFEHMRENYR LMITRPHSQRAFHRVLEEMANTPEGAIIFHCSEGKDRTGLTTFFILYILGVDLETIRQDY LFSNYMLNDYRARRDLEAKEKGSSLAFRANLRSLGSVADEYLDNAIITMCEEYGGIDSYI KKQLAVSDELIDLLRKLYLE >gi|297149550|gb|ACGQ02000001.1| GENE 489 507967 - 508896 1060 309 aa, chain + ## HITS:1 COG:L171943 KEGG:ns NR:ns ## COG: L171943 COG1477 # Protein_GI_number: 15672350 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Lactococcus lactis # 1 305 3 309 325 347 52.0 2e-95 MIEDLATHQVVKNHHALGTSITLQLFGTDQTWLLDQSIKLIDYYEDLFTVNRDKSEVMDI NHAAGLHPVQVSSATYGLVKLAVEKSLENFGFNALIGPVVKLWHIGFKGARVPSQSEIDE KMKLINPKKVVLDDEQQTVFLEEKGMELDLGGIAKGWIADRIRDQWRSFGVRAGIINLGG NVLFVGSSPKRLSGKWSLGVQDPIEKRGKNITSVMVPECSAVTSGIYERYLEVNGHKYHH LIDPRTGYPVETNLAGVTTFTKNSVDAEIECKRLFFAGKPVDGWLNDNRIGAVFVYQNEE VTYEGFDGK >gi|297149550|gb|ACGQ02000001.1| GENE 490 508924 - 509454 365 176 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1745 NR:ns ## KEGG: LGAS_1745 # Name: not_defined # Def: membrane ancor connecting MutS2 with cell-division Z-ring # Organism: L.gasseri # Pathway: not_defined # 1 176 1 178 178 181 53.0 1e-44 MIVTILVLLYLGWQTYKGFQIGFTRKIVNLILSAVFFSLAIILQNPFGNFLYSQYSGQNA AVASNQMELMAARFIAFFIIFYVSKHIKKMFSKWLPTKKSEKSFSSLLDGTLGALASLIA AYLFVYVILSMCNALQNQWFIQQTVDSPFLHFIIYQTPGLSNGVFNSLFSIGKTAG >gi|297149550|gb|ACGQ02000001.1| GENE 491 509632 - 510351 829 239 aa, chain + ## HITS:1 COG:SA2499 KEGG:ns NR:ns ## COG: SA2499 COG0357 # Protein_GI_number: 15928295 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Staphylococcus aureus N315 # 1 238 1 236 239 248 52.0 1e-65 MKPELFIKQLAEKGFALSQKQIDQFSKYYQKLIEVNEYVNLTRITDLEEVYLKHFYDSLT PFLEYPELFKKARICDVGAGAGFPSIPIKILVPEMQLAIVDSLNKRLKFLADLTADLDLG QVELVHGRAEDIGQNVKYREKFDLVTARAVANMATLSEYCLPLVKEGGKFLALKGPKAES ELADAQKAITVLGGQVAATKNLRLPESDEERTLILLNKVKQTPKKYPRQAGTPSRKPLH >gi|297149550|gb|ACGQ02000001.1| GENE 492 510367 - 511209 796 280 aa, chain + ## HITS:1 COG:lin2926 KEGG:ns NR:ns ## COG: lin2926 COG1475 # Protein_GI_number: 16801985 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 15 280 24 283 284 194 45.0 2e-49 MAFFFSKKNEIPKEKQIQDLELSKIIPNRYQPRHEFSEASIEQLAQTLEQEGLLQPIVVR EKGENYEIIAGERRFRAAKSLNWTTIPAIVQNMDDQKAASLALIENLQRENLNPIDEARA YEDLMKLNELTQTALAKDMGKSQSYIANKLRLLKLEPEVQSYLVSGAITARHGRAMLGLT PVEQSHVLHEILQKKLSVKETEAICEDVDGYFAKKAEEVKKATQKEPEKKRVVKTAKDLK VQINTIKQAVKLAKDSGIEVKSHEEKIDDGYKITIELHRK >gi|297149550|gb|ACGQ02000001.1| GENE 493 511222 - 512001 759 259 aa, chain + ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 250 1 250 253 337 67.0 1e-92 MVDIISIANQKGGVGKTTTTINLAASIANRGYHVLIIDIDPQGNATSGLGIEKSTIHQDI YNVLVDEIPITDTIHHTSTPNLDIAPATINLSGAETELISMMARETRLKSALDQVANDYD FAFIDCPPSLGQLSINAFTASDSILIPVQSEYYAMEGLSQLLNTIRLVQKHFNKDLDVEG VLLTMLDARTNLGAEVVKEVQSYFSKKVYKTIIPRITKLAEAPSYGEPITEYDPKSRGAK LYDDLAREVLKAHGKRLKK >gi|297149550|gb|ACGQ02000001.1| GENE 494 511979 - 512887 1063 302 aa, chain + ## HITS:1 COG:BS_spo0J KEGG:ns NR:ns ## COG: BS_spo0J COG1475 # Protein_GI_number: 16081148 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 15 296 4 277 282 270 55.0 3e-72 MARDSRNNEPRKKGGLGRGIEALFEDTPTQVVQSVDGTEEVEELNLEDIRPNPYQPRKNF DDKSLKELSDSIKENGVFQPIIVRKSLDGYEIIAGERRFRASKLAKKPTIPAIVRDFDEA QMMEVAVLENLQREDLSPLEEAQAYEMLQKNLGLTQEEVSKRMGKSRPYIANYLRLLTLP KKAKKLLQHGELSMGQARTLLGLKDKDKIDDLAKKVVKEGIPVRKLEALVSAMNEKANKT SKNDKIRKSAFIRASESRLSTKFGSPVSISESKKGKGHLSIDFSSTDDLNRILTMLGIDL DD >gi|297149550|gb|ACGQ02000001.1| GENE 495 512880 - 513140 323 86 aa, chain + ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 8 67 5 64 65 73 46.0 9e-14 MTDTKLTYQLADTVLLKKPHACQVNNWEVLRLGADIRIKCMGCGHILMMPRADFNKRIKK ILTKANDPVNKKLEHYLPKENIALPK >gi|297149550|gb|ACGQ02000001.1| GENE 496 513168 - 514268 1634 366 aa, chain + ## HITS:1 COG:SP0004 KEGG:ns NR:ns ## COG: SP0004 COG0012 # Protein_GI_number: 15899953 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pneumoniae TIGR4 # 1 366 1 371 371 468 66.0 1e-131 MSLTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIEPNVGMVEVPDPRLARIDELIPA KKIVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIIHVVRSFDDDNITSVTGKVD PEEDINTINLELAIADLDAVNRRIGKVEKLVKGNDKDAKAELAVLQKIKPVLEEGKAVRS IDFKDDEKKIVKGLFLLTSKPVIYVANIAEDSMADPESDKYFQIVKKHAESENAGAIAIS AATEEEIAGLDDDEKQEFLEAEGVTESGLDRLIKAAYHLLGLRTFFTAGGPETRAWTFHE GMKAPQVAGVIHSDFERGFIRAEVVSFDDLDKYESMQKVKEAGRLRLEGKDYVVQDGDII EFRFNV >gi|297149550|gb|ACGQ02000001.1| GENE 497 514279 - 515043 830 254 aa, chain + ## HITS:1 COG:L196216 KEGG:ns NR:ns ## COG: L196216 COG4858 # Protein_GI_number: 15672175 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Lactococcus lactis # 34 244 3 214 219 67 26.0 3e-11 MNTREKNLANIQKQEEVQAKEEKQMNSEMQNPTSLRKQLTNKNGDYVFRLEKALIDAGKS SAEAEKMVNDLLNEIVTAQEQGIPASSLYKKSPILKAEEILHPVIKPKKPKYWMRAVDSS LLYFVVFTAMIAIMALTAGTKNQYNSQYGLLTLIAIAAILGTLMTYYTDILVAGGKGKAK FGKIALLTVAMVAVLFIVITIFSSKAFQIINPVLPAWGNLILVALVYGARYLFRKRYHIT GSVLNPVPQVKSRD >gi|297149550|gb|ACGQ02000001.1| GENE 498 515156 - 516457 1079 433 aa, chain + ## HITS:1 COG:CAC3414 KEGG:ns NR:ns ## COG: CAC3414 COG1132 # Protein_GI_number: 15896655 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 1 432 1 429 577 429 48.0 1e-120 MIKTLLKSVRQYKTQSLLSPLCVAIEVFIEMFIPYIMGWLIDNGIMKANMPYIVKTGSFL LIMAFFSLIMGALASYFSSKAAAGLAANLRQDMFFHTQDFSFENIDKFSSSSLVTRLTTD INNVQLAYQMVIRIAVRAPLMLVVSVIMAFAVNSELAVLFVILAPFMAILLALIIKSAFP YFPKIFKGYDRLNRTVRENVRGVREVKTYVHEKEQIEEFQKSSNYIYKLFTAAQKIMALN APVMMLLLNGSMLLLSWFGANLIVNKSMQTGQLVSMFSYSNSVLFSLMMLSMIFTQLTIS QASAKRIVEVIDEVPTISKPQQHPVTEFTNGDILFDHVNFKYEKDSDVYALKDINLHIHS GETIGIIGETGSGKSTLVAMIPRLYDSTGGAVRVAGHNVRSYDLKTLRDNVAMVLQKNVL FSGTIKDNLKWGC >gi|297149550|gb|ACGQ02000001.1| GENE 499 516408 - 516875 138 155 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 10 154 106 243 245 57 29 3e-13 MCYFLGLLKITLNGVASDEEVIAASKVAHADDFIKEFSDGYDTMIEQGGNNVSGGQKQRI TIARALLKKPKVLILDDSTSAVDTKTEKEIRLALRRDLPKTTKIIISQRIVSIKDADRII VMNHGKIEDIGTHDELIKRNELYSSINKFQEEQGK >gi|297149550|gb|ACGQ02000001.1| GENE 500 516886 - 518727 212 613 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 357 603 259 515 563 86 27 3e-15 MEKQQQPVKKRKALKRLLMYVLKTGPAAFPLSLLGIVISAFSTVYGSLFIERLIDDYITP MLKESTPNFTPLFRAIIMLGVIYLIGVVATYAYTLLMMILAQKVQKSIRDDMFKHMQYLP ISYFDQNEYGDIMSRYTNDIDTLMQMISQSIPQFVNSTLSIIFVLGSMLILSWQLTIVAL VIFALAVGIVKYLTNKSGNYFKIQQKKLGELNGYNEEMLSGLKVIKVFSHEEFAKKDFEK YNEELRIASGNANVYATVLFPIMGNIGNISYVLIALIGGVSAINGYLPLTLGAIASFLQL SRSFSMPIAQISQQLNSIVMALAGADRIFNLLDQEKEIDQGQVTIAPDREVKGAWDWQVP SENAVKEVPVKGHISFKNVNFGYVPDKQILYNINLEAKPGMKVALVGETGAGKTTISSMI NRFYEISSGQILYDGIDIKNIRKDDLRQSVAIVLQDTHMFTGTIMDNIRFGNPDASDDDV YQAARLAHADEFIHELDDGYNTVIDGDGGDLSQGQMQLLSIARAMIADRPVMILDEATSS IDTRTERMVQQGMDNLLAGRTSFVIAHRLSTIVNSDIICVLDHGHIIEAGNHQELLAKKG YYYELYTGKKEIE >gi|297149550|gb|ACGQ02000001.1| GENE 501 518831 - 519517 985 228 aa, chain + ## HITS:1 COG:CAC0830 KEGG:ns NR:ns ## COG: CAC0830 COG0745 # Protein_GI_number: 15894117 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 227 2 229 229 214 52.0 8e-56 MKIIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPQMTG IDVIKELRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQ KKVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEIF ERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVEA >gi|297149550|gb|ACGQ02000001.1| GENE 502 519519 - 520682 799 387 aa, chain + ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 69 375 80 379 380 187 37.0 4e-47 MKKKRVKLTGREKSELFAEAVVTIILLLLLNLSVIILINLAILTNQSLENGIYFLKSTLI FGNGLHIWSWQRIFVFFMGCGDMLVLYWRLLRRYHQMQLRHVIQELHYIAEGHFDHRISF VVKTDLQKVIDSINFLVDSTVNAMNEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLK ADNSLTADQLKYVDIAYNKAGQMKALANDLFDYTTLNSTKTKVNMAPLHLTSMLEQVAAG FELEAEEKNISLNVNTKPDDLVIDADAEKLVRVFNNLIANALKYGHGASFINLSAKKIKA NLVEIRVENDGEAIPKEALQKIFERFYRVETSRNTKTGGTGLGLAIVKEVIDLHHGKITC ESNDQLTSFIIHLPFKVALPESKATVL >gi|297149550|gb|ACGQ02000001.1| GENE 503 520717 - 522267 1575 516 aa, chain + ## HITS:1 COG:L53929 KEGG:ns NR:ns ## COG: L53929 COG0769 # Protein_GI_number: 15673788 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 32 508 37 480 483 336 42.0 9e-92 MSISLNTCILILKEHHLLKSSAVQDSVPTKMDYISYDSRDIQTNTLFFCKGAGFRPTYLS MAKDNGATCYVAEQPFPEGKGMHALVVRDVTKAMALLSAAFYRFPQDDLFLVAFTGTKGK TTSAYFLKGIFDKMNGGKTALFSSVNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNG MTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLLVNSRK CIINAETDHFPEVYAAATTTTNPDSIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQ LFCASDKAKHLAIEGEYTLDMIGDFNEINGTAAIIGAGLGGANHEHASEGIRHVTISGRM ETEKTKNHGLVVVDYAHNKASMMALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSL SVFADKAFLTTDDPGFEDPMDIAEEIDAGIDHAKVDVTIELDREKAIREAISMAGKNDVV LICGKGADPFQKIRGVNTPYPSDIVVARNAIKELEK >gi|297149550|gb|ACGQ02000001.1| GENE 504 522288 - 523040 772 250 aa, chain + ## HITS:1 COG:L92665 KEGG:ns NR:ns ## COG: L92665 COG1794 # Protein_GI_number: 15674208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Lactococcus lactis # 1 229 1 230 240 197 44.0 1e-50 MKHFFTILGGMGTIATESYVRLINHRVKISKDQDYLNYILVNDAQIPDRTAYIKDHTKEN FFFALKDDVEKQSLLKPDFFVMPCNTAHYFYHDLAALTDIPFLNMMDIAVHHFMEKFPKE EKIGLIATEGSIFDKLYENSIVKNGRKVELGGNEIQPLVNELIYSDIKENGYVDGELYHR ILRKMHDDYGCNVILLGCTELSLAQEKAPNHPYNVIDPQSILADVTIELALKIRNGMDVN KAVSKYLYQD >gi|297149550|gb|ACGQ02000001.1| GENE 505 523183 - 523938 639 251 aa, chain + ## HITS:1 COG:BH0826 KEGG:ns NR:ns ## COG: BH0826 COG1349 # Protein_GI_number: 15613389 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus halodurans # 1 237 1 235 251 158 39.0 1e-38 MLTQERQSMIKNYVDQHDFCRVVDLCKLTQSSESTIRRDLSEMDQLGLLQRVHGGAQAVN RSIRDIAQHIRFTINVEQKRKIARYTVQNFVKPGSYIFLDAGTTVYEMVPFLKEVADLTV VTNSLDTAVELLKEDIPTRVLGGKLKKQTHAIVGEIAIKQLSNLNFTAAFIGANGLSKMG DFTTPDPSEAAIKRQELLQSKQVFVLMDSAKLFDEHFAKFAHVSEVTLITNPLSSDQKNK LPDDLVYEEAD >gi|297149550|gb|ACGQ02000001.1| GENE 506 523939 - 524853 1274 304 aa, chain + ## HITS:1 COG:lin2430 KEGG:ns NR:ns ## COG: lin2430 COG1105 # Protein_GI_number: 16801492 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Listeria innocua # 1 303 1 303 307 285 50.0 5e-77 MIYTVTVNPALDYVLQLEKVNTGEVNRTNDCQFLAGGKGINVSQILNQLKIDNTAWGFVG GFTGTELVRQLNQKQIVSDFVKISDTTRVNVKIHAEVESEINAAGPQITEQEIAAFKSRL ADLNEGDIVVMSGSLTPSLGADFYKDLLPTIKEAGAEFVVDTTGQALLDTLEYKPLVIKP NHHELADLFGVTFNSNEEMLTYAKKLLDMGAQNVMISMAKDGGYLVTQDGVYHAAGAKGV AVNSVGAGDSMIAGFVGTYFETKNSVEAFRIGMACGAATAFTKDIAVKSQIDAVLPQIKV EEVK >gi|297149550|gb|ACGQ02000001.1| GENE 507 524886 - 526850 2702 654 aa, chain + ## HITS:1 COG:FN1441_3 KEGG:ns NR:ns ## COG: FN1441_3 COG1299 # Protein_GI_number: 19704773 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Fusobacterium nucleatum # 304 646 1 321 328 279 48.0 1e-74 MRIKDILNPESMIMSLKATNKEEAINEMADLEVATGVVNDKDEFVKSIWARENQSTTGIG EGIAMPHARNKSINKARVLFAKSDQGIDFDSLDGQPVHLFFMITAPDGADNTHLQALAKL SGLLVNPDLIAKLKAATKPEEIIDIFTAAEDAKDAEEKAAAEKAAAKKAEDAKEDKSDKP LIVGVTACINGIAHTYMAEQALIKAGEKLGAEVRIETNGSEGVKHELTADEIKRAKGVII ASDKKVKMARFDGKELIAGPVVDGINKPEELVKDILAGKGSVYHDSGNSEEASEAKASGL HAIYQQLMNGISHMLPFVIGGGILMAISFLVEQYMGGAKTEAFVFLNNAGSMAFAFMVPV LAAYIAEAIGDAPALMPGFVGGFMATVYKGSFGGAYVASVNHSANSAAGFLGGIAAGFIA GYIVVGLKKLFKGLPKSVEGMKPMLIYPILSLLLTALVMFFIINPIFGALNAGITAFLNH LGTGNLVLLTAILAGMMSIDMGGPFNKAAYVFASGAFANDPNSKTAAILMAAVMVGGMVA PFATAIASAFFKNKFTDEERKAGITNWILGFSFITEGAIPFAAADPSRVIPSSVIGSAIA GALVGLLHVGVPAPHGGFWVSPLATNIPGYFLAVIIGSIVAAVILGFWKKPVNK >gi|297149550|gb|ACGQ02000001.1| GENE 508 526935 - 527723 923 262 aa, chain + ## HITS:1 COG:STM0867 KEGG:ns NR:ns ## COG: STM0867 COG0561 # Protein_GI_number: 16764229 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 2 261 3 264 271 134 34.0 2e-31 MIKLIATDMDGTWLNSDKKYDVDLFEKDIALMKKNNINFVIASGNQYDNLKTRFPNNVND LYFVAENGALVAKGNQILAIEDLTIEEINEIQRACIKYKYPVVWAGLNSAYVLKSDGNEL YQEMKKYYHKLQAVNSFDEIDDRLFKMSFVILHDNVLDLVTEMKEKFPKLGFVAGSEFTI DVSKVDMNKAVGLKLLGKKLGISSKEMVAFGDSGNDVAMLKYVGKSFATSTAQIVAKEAA DELIGSSDDSSVQRKIIALLSK >gi|297149550|gb|ACGQ02000001.1| GENE 509 527789 - 528445 212 218 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 218 1 229 305 86 26 3e-15 MAKVLTVENLTMKFDEQTVFENLNFALKKGSMTALLGPNGAGKTTLIRILMNMLTATAGV FKFSQNTKIGYVPQFRNIDSDYPLSIRAFIELNTPLFKSASVKKRVDNILKETNLLEIQN TRMGEASGGQKQRAYLAQALLDEPNFIILDEATASLDPVAKEELMTLIKHLNEKHGLTVL FTTHDIPLAKKYMKDYLLFKDKNLEHNKISQLTKEAYE >gi|297149550|gb|ACGQ02000001.1| GENE 510 528445 - 529236 887 263 aa, chain + ## HITS:1 COG:BH1395 KEGG:ns NR:ns ## COG: BH1395 COG1108 # Protein_GI_number: 15613958 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Bacillus halodurans # 2 259 6 272 287 90 29.0 3e-18 MFAYEFMRYAFWASTFIAITCGVVGVYVVARSFSFLAHTLSEIGFAGAAFAVFMGINPLW GMLLFTLLGSLGVGELSIHSNQKESSISAISALFIGLGVLFLSLAGSNSRYATNILFGSI IGVDLEGVIQLTVLSLLVLIIIAIIQRQLNFDSFDHIGALAHNVNVSLVGIIFLIVMAMA VSVGSQVVGSLLVFILLTLPASTARYLGKTISAMIAWSVGLALIGVWVGLYLGFITNWPV TFFISVIEVLVYLTVYLAKIVKR >gi|297149550|gb|ACGQ02000001.1| GENE 511 529346 - 530881 880 511 aa, chain + ## HITS:1 COG:BB0604 KEGG:ns NR:ns ## COG: BB0604 COG1620 # Protein_GI_number: 15594949 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Borrelia burgdorferi # 9 500 6 498 500 322 42.0 8e-88 MNANMWIKFIFALLPIIWLIMSLGFLKMAATKATAIGLIITIILAKFSFKMPVTNIFNAA LEGVLMALFPIIYVIVAALFTYNVTNQSGSIKIIQDLLSSISTDRRILVLIIAWGFGGFL EAIAGFGTAVAIPAGILIAFGIDPIRASVICLIANTTPTAFGAIGLPVITLSNLTQINGN ELSAYVTFELLPLIILIPFVLVVLVENNLKAIKGVGGICLASGLAFALPQIIVAKFVGPE LPAIVGAIFSIVVTISLAKLKNQNKEQAKDLEMKSHSLNPILRAMSPFILVFVLVLMASP LVPSINQFLNHFIIKFSIGKGSFSFAYIASPGTLIIIATIIGGLIQKIKLQQLGKIFITT IKGLGKTTLTVCTIVALAKVMGYSGMTNILAVSLVALMGPVYPLVAPLIGAVGTFITGSD TSANVLFGNLQLSAARSLEANVDWVVASNMVGATAGKMISPQSIAVATASTGLEGHEGEL LKQALKWFSLYLVIICLYLFGLGIILGMLKY >gi|297149550|gb|ACGQ02000001.1| GENE 512 531055 - 532503 1016 482 aa, chain + ## HITS:1 COG:BB0604 KEGG:ns NR:ns ## COG: BB0604 COG1620 # Protein_GI_number: 15594949 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Borrelia burgdorferi # 2 473 26 500 500 301 40.0 2e-81 MPAVKATSIGLALTVLLSILGGKLTVTKTFLGALDGATMGLIVISYVVVAALFAYNSASY SGNMRVIQNALSHVSTDPRILVLLVCWAFGAFLESVAGFGIAVAIPAGILISFNIKPIKA SVISLLANTATTSFGAVGLPVITLADVTKLNSQTLAIFVSLQLLLLCILVPFLLVLLVDS SFKELKKIWYYPLTAGLVYGIVQLVVSYLLGPELPTIVASLATLIVLIMLAQRKNKSSVK QEKHTLTEIAVATAPFILIFSLVLVTSPLFPQINNFLNNFQIGFQIYPGQDNGQTFSYLV SPGTIILLSAIIGGLVQKVSLQEQLKILILTLKSIWKTIITVCAIVALAKVMDYSGMTTT LATSLVKGLGPIYPLFAPIIGAIGSFATGSNTSSNVLFGDLQLSAAKNLGVNKYWLVASN MAGSTAGNMLSPQSIAVATTGVKLEGKEGIILKDALKWAGLYLGVICIFLYLIGLIFGMI RL >gi|297149550|gb|ACGQ02000001.1| GENE 513 532591 - 534378 1981 595 aa, chain - ## HITS:1 COG:SP0979 KEGG:ns NR:ns ## COG: SP0979 COG1164 # Protein_GI_number: 15900856 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Streptococcus pneumoniae TIGR4 # 1 595 1 594 600 551 49.0 1e-156 MVLPTRNEVPKELTWDLTRVFPTDQAWQKEFESVSNEISNLNNLSAIITKSGNDLYSALT QIFSIDRRLEKIYVYATMSRDVDTSNNHYLGFAAMAEDLANKYSSAISFINPAILSLSNQ VLKEFELQEPKLLNYKHYLDQITNKRNHTLDAQSEQIIAASGAALGSSSNTFNVLTNSDL EFGYTTDNDGEMVQLTEGLYSQLIQSPKRTVRKNAFETLYASYGQFQNTLASTLSGNVKS QNYVALMHGYNSAREAALAQSHIPVSVYDNLIKGVHKHLNLLHRYMKLRKKVLGLEELEM YDLYVPITGTPSLSYSYSESKKQAREALSILGKEYLDQVDYIFNNRVIDVVESKGKVTGA YSGGSYDTDPYELLNWTNDFDALYTLVHETGHSVHSAFTRKNQPYIYGEYPIFLAEIAST TNENILTEYLLSKATDPKIRAFILNYNLEAFRTTLYRQTQFAEFEQFIHEADQSGEPLTA EKLNSFYGELNQKYYGIVEPGSDIDKEWSRIPHFYYNFYVYQYSTGFAAAVALAKNIVHG TEKQKADYLAFLKAGSSEYPIEIMKKAGVDMTTSTYLDSAFSVFEQRLNELEKLL >gi|297149550|gb|ACGQ02000001.1| GENE 514 534547 - 535755 1159 402 aa, chain + ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 43 343 9 319 338 192 37.0 7e-49 MTKNHPDSREEYRFKQRSGRLLSRNQFFTANKQIASNKNFKKLLTLIVFLVVGFVATWGS HFYFNLEAALGNTYQGGTPATQITNKQPISVLILGVDQGIENRHDQGNSDTMILATANPQ TQKSTLTSIPRDLLADIKGDNGKYFMFRVNSAYQVGGNKAAMKTTKALLNTPINYYMEVN MKALQELVDAVGGVDVKVPFSFTYNTTFKKGKMHLNGKQALDYARMRKEDPRGDYGRQLR QRQIIMAIVKNALSLNSISNYKKILKAFSKNVTTNMTFSDMMAIAINYRSVANNIKSDYI HGHDAWIDGASIQVASTSELQRVSNYTRTNLGLKKQKLSNEETRQNRLNEKYNAIDWTNP NAFTNYQVFPANSDSAVNSDSGSNYNTTYNNNVSEYDNGGNW >gi|297149550|gb|ACGQ02000001.1| GENE 515 535805 - 537370 1997 521 aa, chain - ## HITS:1 COG:Cgl0921 KEGG:ns NR:ns ## COG: Cgl0921 COG2132 # Protein_GI_number: 19552171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Corynebacterium glutamicum # 31 466 40 489 513 249 35.0 1e-65 MTEKVYTDYFYDEADFDKNHFRYKNLHIPDGVEAQPLAVPPVLKPDKVDGNDVWFTIESL EGETQFLPGSKTKTWGYNAPFLGQTMVLKTGQHVHVTLKNSLKELTTYHWHGMEVPGPYI DGSCHAPVYPGEEKEIEFTVEQPAALTWLHAHPCPSTAAQVWMGLAMGVVITDDHEAELP IPKAYGKDEFPIVLQDRVFHKDNQFDYRADYDPMGVFGDTPLINGIIKPYIDVTTQKVRL LFLGGTNRREWRLHFDNDLVMTQIAGDDSFLEHPVKMTKLLVGPGERLQVIVDFSGYKSG DVVNLYTDDFKLIEFRIHDFEEDNSVLPDTLFTPTDPKVDPDAPIRKVTMDDHDKINGKQ YSMQRIDMKAEVNHAEYWDVTNTNSKSHGMLHPFHIHGAHFLVVSRNGQTPNPNEIGVYK DTIEVAPQETVRLKVIFPKEGLFMYHCHIIEHEDAGMMANILIVDPTKPEPHYDLMDMET LTKAFAEEKGIPESEVFMPGMCTEGYMDHCHDDANSGASHH >gi|297149550|gb|ACGQ02000001.1| GENE 516 537608 - 538114 417 168 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01779 NR:ns ## KEGG: LCRIS_01779 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 148 1 152 176 135 51.0 8e-31 MKILLKDLLEKIENEDYIQDLETEKYSALTKSKVKTISQNLVKQVLAALKHNSLAHVQLD VTGQRPASFILETNVVNLPYANYKKIGNFVSADEPLPVKIYFEVSSEYINASKFWIEELA GVDDLNEEIIADHFADLINQKLVDVRNYVKPEKTVSAKKTKEKTKKKS >gi|297149550|gb|ACGQ02000001.1| GENE 517 538188 - 538814 662 208 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1632 NR:ns ## KEGG: FI9785_1632 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 4 207 5 208 208 207 53.0 3e-52 MFNWNWLGILVWLVLLGYLIFISYHIRKRHLKMIVMQQKHFTWRTLGLDFLEILILLIGL FIQIQNSFFDNPSLTVKSQIEQSIEYKPLVLSSASDRSYYVTSNSVQKKKLYQRYSFFTE ENQYSVTSDWATISDGSVALNTVAQKLPYSKQVLAKYDTKYQKAYVAIYEAKYKNTWQNG LGLHVGRTALRYYLIRVPDSTFVREVKN >gi|297149550|gb|ACGQ02000001.1| GENE 518 538826 - 540379 634 517 aa, chain - ## HITS:1 COG:no KEGG:LBA1747 NR:ns ## KEGG: LBA1747 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 7 514 1 501 503 468 52.0 1e-130 MVRRIPVNNKIKKSLYWFILLQPFLDFYWFYNPPLSTILPFTFPTIIRIFAVATLLGMFF SKKYHWQKIGKHWWIIAYTIVLIIYSALHIWHVKSFVSVNPNDYGYTTTGEIFYLIRMFL PIVVLYITANSNTEKKDFVRVIQSLVASISITIVLSNLFLISLMSYGNQFIQGNIFSWFS GKRMSYFLLASKGFFNFANTISAILFMLLPLMLYILVTQFNLINVILYIFQSLAMLELGT KVAAYGLIISSAIFVFLYLIHHFVFKNIKINNYAISIIVLGTLATGLIFPFSPAIQRGNF EEKITELRSNKKNHIKSHKQVDVSQTLKEGLKKHSGKKREKFLKNFFAKYSDFYSLNSRF VKQSYSYKYDPEFWLEIIKLPVQDRMNNRLIEQKMLNQVLKTNNNKLDKWLGISYVRETN IFNLERDFIAQTYSLGLIGMIIFVGIYLVILIYAGFKWIINSQNRSFLNSCLLTSSSFLI FSSYYSGNVMDFLTATLILSFIMGYLLKSLNTTKKAA >gi|297149550|gb|ACGQ02000001.1| GENE 519 540451 - 540741 334 96 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1701 NR:ns ## KEGG: LGAS_1701 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 95 1 94 96 92 69.0 6e-18 MKKNDVKIGAIVEARSQEELKCPFQGKVEKIYENSALLSITSFDPKDAASVSDLNNKMVI NFKYLKAVKSPKKSAKTPSSNDVKISKIDDDSSNKK >gi|297149550|gb|ACGQ02000001.1| GENE 520 540800 - 541384 508 194 aa, chain + ## HITS:1 COG:HP0321 KEGG:ns NR:ns ## COG: HP0321 COG0194 # Protein_GI_number: 15644949 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Helicobacter pylori 26695 # 13 191 7 185 206 70 32.0 2e-12 MNFKRGELFLKKLIIIAGPSGAGKTTISDYLEEKYQIPRVLTHTTRAIRPGENKEAYYFE TEESFSKLHLFESVKYGSYQYGSSREGLEKAWETSDIVSIIVDTAGVKSYVEKLQPNQFY FIYLKVSNLDTLEERLVERGDEPTEILKRINSREFKRDLQLSEGLKKYSHILINDNLEET QRKIDKIITKLRKN >gi|297149550|gb|ACGQ02000001.1| GENE 521 541554 - 542561 1473 335 aa, chain + ## HITS:1 COG:CAC2943_2 KEGG:ns NR:ns ## COG: CAC2943_2 COG0791 # Protein_GI_number: 15896196 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 204 335 3 135 136 114 48.0 2e-25 MNFKRNLAKISAATAFALAGVATVNTLNAPTSVHAATLPYAVKINYVPGYGIAVWNNYNN PELIAGKKLAHGTAWRVFAQATDSNGELWYNLGGAQWIMAKYTVDASSSDSSTSKVSQPR VSVATVNYVPGYGIAVWNNYNNPELTGKILPHGSSWRVFAEATDSNGELWYNLGGAQWIM AKYTLGGSSNTSSSSNVSASSNNGSSSSASNTTQATTSSAAKVVSLASAQLGKAYVWGGN GPSAFDCSGLVNYVYSQVGISLGRTTYVQVNHGTTVSMNNLQPGDLLFWGSASAPYHVGI YVGNGQYIHAATPSQGVIKQSISQYFYPSVAKRVL >gi|297149550|gb|ACGQ02000001.1| GENE 522 542617 - 543843 1043 408 aa, chain - ## HITS:1 COG:no KEGG:LBA1739 NR:ns ## KEGG: LBA1739 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 325 7 333 336 220 39.0 6e-56 MLTSVALLTLTLATNNHSVYAADFSQEESQQVVDYQKQYQAIDKSTYSNQNMYDSTPTDT DSGKLNSQYIKTSLDYINYYRKLAGLNAETTTDSANNDAQLAAWALAKVNYPVSKDAHGI LNTQKPEGMTDSDWDKAQLASFGNITFTHNYDGSSNPETDVNSPFLDNNNIDGTALTGHR DLLLSARASRIGFGAAIGTNKIKYTVQNGVFADDLLKSNIWADVSFPSKELYPIELLQHE NTPWSIYLGNTEVVGTPVITITDKDTGKTYTATNVKNLGRFNWAYGYKTTIDYMPTGVEL VLGHEYLVKVGNVYSYSFKLFSQLGNGVPVTKLPQTVTNQKTKPLQIQKSTFENKSNIKS SVKSQLIKSSNAIASQKTLPQTGNKSWLLALMGFLSITLGLAVGKKYN >gi|297149550|gb|ACGQ02000001.1| GENE 523 543965 - 545236 567 423 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 27 415 31 422 425 223 36 2e-56 MIDNQPQKTKVVVAGVNLSDPNFDYYMTELVNLSEANNMLVVGQVRQNLEQIYGGTYFGL GKLNEIKNLAHGLHATAVVLNDELTPMQIRNIEKITKLEVIDRTELILEIFANRAKTRQA KLQVQLARLQYELPRLHPSENTLDQQRGGGSVNRGSGESKLELNRRTIDKQITTIKKELQ NVATQEEIKSKRRNNSKLPQVALVGYTNAGKSTTMNGLLKVFGSDTGKEVFVKNMLFATL DTSVRRINFDGTNDFIISDTVGFISKLPHNLIESFKATLKEASDADLIVNVVDSSDSNML QMIKTTQKVLHEIGITNVPIVTAYNKADLTTKKFPEIEGNDILYSAKDSESIKVLAKFIT KRVFSNYKSLNIKLPLNAGALLSYLHENGDVKKEEYTNTGILITVKLSPKDYSKFSIYKQ KSE >gi|297149550|gb|ACGQ02000001.1| GENE 524 545409 - 546158 284 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 222 1 219 223 114 29 1e-23 MSNLVNVKEITKTYGKKGQKQFTALKGISFEAKKGDFIVIMGASGSGKTTLLNILSTLDK PTTGRVEINGKDISNLNKNAMADFRGKEIGFIFQDFNLLENLSVRENIALPLSLQNYPVK KINPLVEKVANRLEIADLLDKYPAQLSGGQKQRVAASRALVHEPAILLADEPTGALDSKS ARELLTTMEELNEQGVTTLMVTHDPFSASFGKRIIFIKDGKIDSELAKGNKERKDFYQEL IDKLGTLEN >gi|297149550|gb|ACGQ02000001.1| GENE 525 546173 - 547972 1317 599 aa, chain + ## HITS:1 COG:SP0913 KEGG:ns NR:ns ## COG: SP0913 COG0577 # Protein_GI_number: 15900794 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 4 593 7 659 662 117 22.0 8e-26 MIWKLSLTGIKSRFKDYLVLFSGLVISSTIFYMFLSLALNPAFLRKNMSFSISITQYIFI FGAILLGIITVAYVNFANNFLLSMRKKDYGTYLMLGAKSRKIGNLIFSETLITGFLSTIV GILLGILVSHVVTDMLLNLIQIKISSYSSFVFNAVLYTVLFYIAIFFLAAIFNRIKLTKT PVIKLLKEEQSPVTITKKKFLRIIFAILGIGLLATGYSLLLKKDIDLKIIVASFFTITFG SYFFFKASLGMAIDFLRLRHQILYKKLHSFTLGQLKFRIEEYTQILAAISIFFALALGAI TVGMRFESYKNQYASTTYYDAVVQKETAKTTRLLKEIKGKTTARYNFKETNKVIYFNQSS FKKTPLVNLVFDEKAVSSQSDAIEHMKTVKLTAKKNEIAQMTELLQEFLQTGKKIQFVSN SEYQKLTGKVKQFQLIRTKDMRANYSNLKELNEEQTDSSQGLVPLRPVAYQMVIGLVSGF EFMGFFLGVAFLAMLASTLMFKVLTGAKKDQIRYQMLSKLGFRDKQIKSAINQEVGILFF LPAVLGLCHVLFGLKLFERIVIKPYQDFWIPFTIFLLLYLIYYFATIKLYQSIALKKVK >gi|297149550|gb|ACGQ02000001.1| GENE 526 548051 - 548500 573 149 aa, chain + ## HITS:1 COG:PAB1489 KEGG:ns NR:ns ## COG: PAB1489 COG0105 # Protein_GI_number: 14521543 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Pyrococcus abyssi # 3 149 8 156 162 137 46.0 1e-32 MIQNEYSLVLVKPDGVKAGHVGDIITRIENRGYKIEALKVINATEDQLNEHYIDSVGKPY FPHLLNYMTSGPMIGIIVSGTHVIEVLHKMAGATNPSSAEMGTIRGDFGREWPDDNIRNV IHTSDSQESAEREAKVWFSDFDFSKIENY >gi|297149550|gb|ACGQ02000001.1| GENE 527 548541 - 549191 619 216 aa, chain - ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 4 212 7 216 224 125 36.0 4e-29 MKKVYIIRHGRTYINHYNKMQGWCDTPLTNEGIDGAKKVAQVLKNIPFDLALSSDTKRAS DTCELIMKENINHNQLQHLTSKFFREQFYGYFEGMDSDMAWRMIAGPVGLRNLQDLLDNY SIDEIKDLMKKSDPYHDAENAQEYWSRLEQGLDLIRQLDGYENILLVTHGFTIRSLVAKY GKGTFDIKTGPRNSSITMMELTDTDTKITSYNQLTL >gi|297149550|gb|ACGQ02000001.1| GENE 528 549207 - 549881 711 224 aa, chain - ## HITS:1 COG:SP0617 KEGG:ns NR:ns ## COG: SP0617 COG5549 # Protein_GI_number: 15900525 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted Zn-dependent protease # Organism: Streptococcus pneumoniae TIGR4 # 54 210 80 236 240 134 42.0 2e-31 MKIINKLLKLGIWVGLIAFAVHLYQNDTSIQTAAKDSVAFLQTKVTQLVYPNSKSSANDD HNSTNNYTWSSNNATVYIDLDNQILYNAAVNAINSWNSTGAFTFKIVNSKKNANIIIKAM NDDSTNAAGLTNTSYNPVSHHLLKAVVKLNEYYLLNQWFGYDNQRIVNTAEHELGHAIGL SHTKEVSVMYPEGSYYTIQPRDISNVKQLYGENNQSSSSSINAA >gi|297149550|gb|ACGQ02000001.1| GENE 529 550065 - 552359 1907 764 aa, chain + ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 1 754 1 762 774 499 38.0 1e-141 MNNFENEKRYEQAHLDEVLGLIKKKEAKLAGSIKSAEKEARNLNAHFFDDLKLDYDGYST SMDTALSIHQQQQMLAERQNAWQHSSKQLSTLKRLEKKPYFARVDFEEVGEKPETIYIGL GSFADRDDHFLIYDWRAPISSIYYDGKLGKVTYHAPSGEQEVNMTKKRQFMIENGHIENM FDTNESIGDQMLLEVLGEKSSTQMKSIVTTIQKEQNKIIRNTSADLLFVQGAAGSGKTSA ILQRIAYLLYRYRGNLTSSNVIMFSPNQLFNDYIENVLPEMGEQNMVQMTYWQFASRRLP GIAVENLFEQFENSEKNNKIKDFKDSIYFFKLVTRYAQLLKEKGMVFKDLYFRDKDKPFF SKEKIKDIYYSFPPNYKLSNRIDATRESLVNSLNHMITSESKKAWVADIIENLSQEQLNQ LYDRPDQEFESSEKEERFLARKIVIKELQKVNKKINHNQFLNIRRQYINFLRLVGKSVDF TKYGFSQEEWDKHISEVITGFKNKKIKMTDVSAYLYLYDLITGRRTNYEMRYAFVDEIQD YTPFQIAYLRFNFPRAKFTMLGDLNQAIFTKDSSHDLLNQISTLFDPEKTEVVQLTKSYR STKQITEFTKEILVQGEKIESFNRQGPKPTFYKRADFLAEIESLMSVIKENDAQKLTTAI ITKDLASSKAVFTALKEKSVKTTLIASANQRLVPGTIVVPSYLAKGLEFDAVVMWDASDK VYHNFDESQLVYTIASRAMYKLDIIYCEKLSPLLQVKKDLYIDK >gi|297149550|gb|ACGQ02000001.1| GENE 530 552452 - 553066 712 204 aa, chain + ## HITS:1 COG:SPy0873 KEGG:ns NR:ns ## COG: SPy0873 COG2357 # Protein_GI_number: 15674898 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 2 201 12 211 216 234 61.0 7e-62 MSIYGKYQAYLPLILEDMRQEITAMNEEYQKNHGQKLYEHFEGRVKSDKSMIEKCQRKQL PLTPESALIKNRDSIGVRIVTNFVDDIYTVIKLLELKKDIHIVKKKDYIKNAKPNGYRSY HLIIEKEVPFEDIKGQKPGHYFIEIQLRTIAMDTWASLEHEMKYKHNIKNPERISKELKR VADELASCDLSMQTIRQLIKEDES >gi|297149550|gb|ACGQ02000001.1| GENE 531 553063 - 553734 600 223 aa, chain + ## HITS:1 COG:SPy0874 KEGG:ns NR:ns ## COG: SPy0874 COG0745 # Protein_GI_number: 15674899 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 218 1 219 222 251 60.0 8e-67 MRILLAEDEKQLNRVLTVAMTSQGYDVDSTFNGQEAVEMAQRKAYDVMIFDIMMPIKDGL TAVKEIRASGDKTYIIMLTAKSEIDDKVRGLDDGADDYLTKPFSLKELLARLRSKERRED SYTTKKVQLANLFLDVENQEASSRNSVRLSNKETELLQYLLLNKEKKLSTQAIFTHVWKD SDEDEDIVWIYVSYLREKLKAIGADVEISGEKDGSFMLQVKKG >gi|297149550|gb|ACGQ02000001.1| GENE 532 553741 - 554991 1299 416 aa, chain + ## HITS:1 COG:SPy0875 KEGG:ns NR:ns ## COG: SPy0875 COG0642 # Protein_GI_number: 15674900 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 412 1 410 410 318 43.0 9e-87 MIKKFRRKFIAVAVLSLAIILFASFGGVVLATQYRTDKEITNVLQLLAKNNGQLNQKAAR KTLGPDSNKDSLFKYRYFTLSLSSTGKLKLVDNTHISTISASDITSNSSLIKRTIKNTTS EGSIMINSNPYRFILVKSKSSNQTIAIFLDTTPITASYKHLFRVAIFLGISGLIFFTLIL FLLSNQAIKPIVEAYEKQRRFITNAGHELKTPLAIISANTEMEEMIGKSDEWTESTKEQV ERLTMLINQLISLARMSEKDELILERVNFSDSVKRAANSFKSLIQKDGKNYDIEIEPDLF VNGEKQSLYELVNILIDNANKYCDEAGRVSVNLNKGSLGRNAILQVKNSFKDGKSINYNK FFERFYRSDESHNSQKGGFGIGLSMAQDLVRVFGGKINASYDGKNVVLTVILKLRK >gi|297149550|gb|ACGQ02000001.1| GENE 533 555063 - 555977 737 304 aa, chain + ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 3 302 6 304 306 272 47.0 6e-73 MKSFTHFSRKEWASLNPNLNINVSHEELEKINSHGDVLSIKDVRQVYESLVAYIGVVFKQ SKEKEKKKADFLKRPISKRPFIIGISGSVSVGKSTTSRLLRLLLQRTYPELKIQRMTTDG FLYTNNELKAKNLMSRKGFPESYNMQRLNDFLTDVVRGKEDIVYPLYSQGISDIVPDEFG HVLSPDILIIEGINTLQLPPNGTIVSSDFYDLSIYLDADEELIESWFLSRFKELMEQNKD NPDNYYYHWANSDRTKAINAAKEVWQSVNLVNLREFIAPTKARANVVLHKTKGHHIDSVY LRCY >gi|297149550|gb|ACGQ02000001.1| GENE 534 556103 - 556663 884 186 aa, chain + ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 186 1 185 185 192 55.0 2e-49 MVNAIELKKGMIFSQDGKLMRVLKSNHHKPGKGNTVMQMDLRDVRAGSVIHKTMRPSEKV ELVEVAKKGAQYLYAEGDNYIFMDTTTYEQYEITKDQLGDDALYLMPNIEVQLEFTDDGE LIGIELPATVTMKVAETQPEIKGATAAGGGKPATMETGLVVTVPDFINEGDELVINTQEG TYKSRA >gi|297149550|gb|ACGQ02000001.1| GENE 535 556722 - 557633 906 303 aa, chain - ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 12 293 16 290 296 150 34.0 3e-36 MKQGTKILTLDNGYHLWTNTQGSGDIHLLALHGGPGGNHEYWEDTAEQLKKQGLNVQVHM YDQLGSLYSDQPDYNNPDIAKKYLTYEYFLDEVEEVRQKLGIDNFYLIGQSWGGLLVQEY AVKYGKHLKGAIISSMVDEIDEYVEAVNRRREEVLTKEEIDFMHKCEAEGNFDNQRYQDD VQILNINFVDRKQPSKLYHLKDLGGSAVYNAFQGDNEFVITGKLKDWHFRDQLPNIKVPT LLTFGEHETMPIETARTMEKLIPNSRLVTTPNGGHHHMVDNPDVYYRHLAQFIQEVETDT FNK >gi|297149550|gb|ACGQ02000001.1| GENE 536 557874 - 559364 1394 496 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 22 490 51 522 535 167 26.0 5e-41 MLKLMLNVASSGKKDMMQLVGLAGITAVGQLFFMCSNFLYEANKMEIIRQVNLYLKKKNI AYLVDRGDSDIKQGLSLMTNDLKQIETNRVTAQLDMIFQSITFVGALSFAFYNSWEMTLI FIVASLAPAVVQIFTSKIITQKAKIWTKTNADYTQSVSDSLNGANAANLYNSRDNILVRA TKSASKMEAALKSMNLTQAWALELIYSAAELFCFIVPCTIGGILMMEGKLAVGTLVMLVD LAMNFITPVVTIFQEFNQVKSTVPMWEKSLRAVNYQLDDEVEKRDNFTGLEVQNLSYQTS SDKRTIFSNVDLKVNPGEKVLLMAPSGWGKTTLLRLMLGQKQPQEGKVLINQKDVTGNWE SAHNYYSYVNQKPFLFDDSLRFNITLGRTCSEAELLAAIKEAGLNDLVESKGLDFYVGEN GNKLSGGQIQRVEIARALLSRRPIILADEATSALDPVMSKAIHETLLKNPQVAVIEVAHK ISDYEKEMFDQIVKFK >gi|297149550|gb|ACGQ02000001.1| GENE 537 559666 - 559986 318 106 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851890|ref|ZP_05557278.1| ## NR: gi|256851890|ref|ZP_05557278.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 106 1 106 106 110 100.0 3e-23 MATIVALIFLLQSLIVPEILAFVFREFALFFGLLSVVLLIIALVLKAYQTFQLASLIDVG MFTAFWGVVVLFISQNYISVFTMIVPIFAVVVGIALIICGKKAESY >gi|297149550|gb|ACGQ02000001.1| GENE 538 560180 - 560932 1185 250 aa, chain + ## HITS:1 COG:SP1472_2 KEGG:ns NR:ns ## COG: SP1472_2 COG2461 # Protein_GI_number: 15901322 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 18 223 4 207 227 119 37.0 6e-27 MAEPKWLKDMNPDDYLKEDFDCKGKGKYTVSGIENDDPEWLDKAAKKVNAAEGDDYVKLD CGLMTVNQLNWMLRNTFGELTFVDENNQFLWYNRPTDPNYKMKAKRVPAQVGDTMGQIHP DVRDVIPNAKKVVHALRTKEGGHDDVYMPVPTGNLKELVLHYYKRVEDEEGNYRGIYEWV QDLYPFVKYFCETTGQKLVVDPDATTGATYRRNSDPDANTGASRKAEAEKMEEKPKVEEK PDANTGASEH >gi|297149550|gb|ACGQ02000001.1| GENE 539 561057 - 561968 935 303 aa, chain + ## HITS:1 COG:slr0619 KEGG:ns NR:ns ## COG: slr0619 COG2159 # Protein_GI_number: 16331820 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase of the TIM-barrel fold # Organism: Synechocystis # 53 299 74 334 348 89 27.0 9e-18 MKIDVFSHFLPQKFYQKMLEIEPNLADTFPYVNNPILFDPVKRQESIPEGVKQVISAVNI NPEDFARADTAAKLCQMANEELNELVMSNEKFLAAVAMLPMNNLKVATEIIHQITSKENK LIGAQIFTRALGKSIADESFEPIFAQAEKDNVPLLLHPVFDERKPDNNLVFSWEYELGQA MLQLTENGIFEKYPKLKIIVHHAGSMVPFFAERINHILPKKQADDFKKFYVDTAILGNPS ALKLALDYYGSNHILFGTDAPFGIQPAGATNEIISALKETNIESKQLDKVFYENFYELFE NNI >gi|297149550|gb|ACGQ02000001.1| GENE 540 562024 - 562431 530 135 aa, chain + ## HITS:1 COG:CAC0766 KEGG:ns NR:ns ## COG: CAC0766 COG0789 # Protein_GI_number: 15894053 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 4 124 1 121 126 95 41.0 2e-20 MANLTITEISKKYNITTDTIRYYERIGLLPNIPRKSNGNRYFTDGMQHFLEMVICLRHSG VSVDSLVEYVALIQKGDATLDARKELLEEQRDLLEEKKHNLQRSIDRLNHKISLYESGEI TEDKSYFKEYKINED >gi|297149550|gb|ACGQ02000001.1| GENE 541 562447 - 563385 1269 312 aa, chain + ## HITS:1 COG:all1225 KEGG:ns NR:ns ## COG: all1225 COG0667 # Protein_GI_number: 17228720 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Nostoc sp. PCC 7120 # 5 294 14 311 315 155 31.0 1e-37 MNKESKIVLGAWAWGDNNSYFGNNYDQSHFQEVYDQAVKSGLTFWDTAFAYGAGNSERIL GNLMEHTPREELTISTKFTPQMADNSENPVEQMFEGSLKRLKTDYIDYYWIHNDADVEKW TPMVINLVKSGKVKHIGVSNHTLSEIKRVQKILVEAGLKLDAVQNHLSLLDRTSEQAGIL DYCRQNNIEFFAYMVLEQGALTGRYNQDNPFPAGSVRAQVYNNKLPQLTELLNNLQAIGD KHGISIAQTAMAWAMAKGALPIIGVTKVNQVKDAKAVTQVQLTSSEINQLEEVADKANVN TIGSWEQDMRED >gi|297149550|gb|ACGQ02000001.1| GENE 542 563407 - 563790 481 127 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851895|ref|ZP_05557283.1| ## NR: gi|256851895|ref|ZP_05557283.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 127 1 127 127 243 100.0 4e-63 MTWTKEELANFNESSTLQNHPFDSDKHWTEDNPVWCVVADNRLFIRGAKGDKATKWVLNG TANGGEVAVEGKLYQVNYNLVTDKETIKLVTEAYEKKYHGQYPIDLMVSEIAESGTVELI KDINKME >gi|297149550|gb|ACGQ02000001.1| GENE 543 564072 - 565139 763 355 aa, chain + ## HITS:1 COG:BH3996 KEGG:ns NR:ns ## COG: BH3996 COG3410 # Protein_GI_number: 15616558 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 182 350 18 184 188 140 44.0 3e-33 MVLAHLFNQIQLAARNEKNSNLYGTKNYFLVNHPEILKVYKEIAGQEAGLYKKDFTRPTS LINELDKKQAQVDIVVIDEAHLLLSHRDAYNNFTYDNQLIEIIKRSKVVILVFDPYQVMR TKTYWSTKRLEKITHQYPHEDYHLTHQFRMNASSELIDWFNTFTDEAKIMPFPKNARLGY DFRVFDDAEKMRQEIVKRNQEVGLSRILSTTGYPSILDGKNHYIEEGKFKMPWDQYNYTS KPWAEIPETINEVGSFYTCQGFDLNYTGIILSPPFSQIPGTNKVQIDTSKFTDTEAFKKR ADLFDPQELEQVKQRLFMNQINVLFKRGVYGTYLYAHDPLLRKTLFQAYREISQS >gi|297149550|gb|ACGQ02000001.1| GENE 544 565231 - 566496 1180 421 aa, chain + ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 8 407 9 409 412 384 48.0 1e-106 MNIDQKYIQDKFIEYCEVDTRSYFESETVPTSVGQVELLQLLKQELIELGLSQISYSPKD AYLLGKIPATTSKKVTAIGFVAHVDTADYNSKNIKVQIHKNYDGTDIRLDKSHVLSSKQF SSLKKVIGHTLLTASGDTLLGADDKTGIAGALGMAKYLLSHPEIEHGDIWLAFGPDEEIG KGAARFDVKRFPVEFAYTLDNGDIGDIAYETFNAASATVTFAGTVVHPGEAYGLMVNAGL MANEFIAALPKDFVPEKSKGYDGFYLVTDFSGNVDQAMVNLIIRSFDTKDFLARKQFLKN LANKIDAKYGKGRVKIEMRDQYKSPGDLIKQNPYVVNLVHHAYKQLNITAKHIPFRGGTD GDFISEKGIPTPNLFNGGANFHGPYEYVTIENMAKLSEVLVEISKLHVHLNDCRDETPLK R >gi|297149550|gb|ACGQ02000001.1| GENE 545 566508 - 567284 704 258 aa, chain + ## HITS:1 COG:SA0315 KEGG:ns NR:ns ## COG: SA0315 COG0846 # Protein_GI_number: 15926028 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Staphylococcus aureus N315 # 5 253 22 289 315 96 27.0 5e-20 MSDFEKARKIINEADAILITAGNGFASLDGFDMLDEASFKIQYPDLVEKYNFKTIGDALD RRLSNWDEQWSIWRRFIDNYSINYQASSMMQNLKTLLKGKEYFIATSYYIHAFENAGFDS KKIFNIFGDWTTMACSSGINHGLKSDLQIYGVPKCEICNSEMEIHMPLTAHFYPDTDANT RLRIFITNNESKKVAVLGLGVDELSPQLLEPITHLVSQFESWHYISADLCITDLPQDVAK RSIAAESNSESLLEGLIS >gi|297149550|gb|ACGQ02000001.1| GENE 546 567284 - 568237 738 317 aa, chain + ## HITS:1 COG:FN0281 KEGG:ns NR:ns ## COG: FN0281 COG2176 # Protein_GI_number: 19703626 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Fusobacterium nucleatum # 33 239 425 620 1454 90 29.0 4e-18 MTVKVVSGQLEFTNQNLANKLRKKGHELVTFLDDYTMLDIETTGLSLYRDRITELAGIKV RNGKVVAEYSQLVKYPKDNKVPRFITKLNGIDEALILANGMPVKEAITEFRNFIGGDVIV GYNVNFDLNFIYDLWEKFQLKKLSNNYIDVLHFSRVFFKKESHNRLLDCIRRLGISESEA HRGLKDSLDTKAVFDIYRKQFTPEMLNEVKDSLKSCVLTEEIPFEYLIKRNPLKNKTVVF AGTVNKEELELIVSNMGGQVRDHVDSTIDYLVMGDKDFFSKSNSELQKARRLISEGIKIS RLSESFFLDMLDSWARS >gi|297149550|gb|ACGQ02000001.1| GENE 547 568246 - 569121 784 291 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1579 NR:ns ## KEGG: FI9785_1579 # Name: endA # Def: extracellular/cell surface DNA-entry nuclease (EC:3.1.30.-) # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 289 1 280 282 320 68.0 4e-86 MTKRRKKRASNRKFNPITSILFVLAFAFWGIYQSSGGNLSTAVNSITSFNNSSSSSNSAK NTFTATSADTEYGGLSTSDYQKLANLDFQSGQKGYVVVNNNHSTLIKNAWKVNKVIYSNL DNLNRTSHSNTGFLEQRNVANDSLRVRQFVNPTAWHSNRSSGEQIYNRGHLIAYSVSAGI DQNGNYEPNNQSGDQNNPKNLFTQTAYSNQKVQTIFEGKVRQALRQGKKVIYQATPIFRN NELMARGINLQAVSTDGMLDFNVYIFNVQPGFQFNYQNGRASKDNSLQVAN >gi|297149550|gb|ACGQ02000001.1| GENE 548 569297 - 570382 1076 361 aa, chain + ## HITS:1 COG:mlr7224 KEGG:ns NR:ns ## COG: mlr7224 COG3839 # Protein_GI_number: 13476018 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Mesorhizobium loti # 7 356 4 376 381 264 38.0 2e-70 MNEEKFVEVKDLRKVYDNGHEAIKNVSFSVKKGDLVCLLGPSGCGKTTILNMLAGLLNPT SGEILFDGKNVVNVEPKDREIGYVFQNYALYPHMTVLQNVMFPLTVGKTKRPKEEAEKIA KKYMALTQITDLANQKPGNLSGGQQQRVAIARALVGEPKILLMDEPLSNLDARLRLKIRE EIRALVKEVGITTLFVTHDQEEALSIGDKIILFNNGVIQQDDNGQNFYLEPKNHFVANFI GNPVIDNFAVTVENDEIKASDFTIKVSDWDKQRLRKQLVDGNYILSVRPENITPADNGEL AVQIVDVELIGRERILKFNYDGQQARSLVNLEVPIKAGDKVRLKLRLDRIFIFTPEGERI Y >gi|297149550|gb|ACGQ02000001.1| GENE 549 570382 - 571248 962 288 aa, chain + ## HITS:1 COG:BH3689 KEGG:ns NR:ns ## COG: BH3689 COG1175 # Protein_GI_number: 15616251 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 7 283 16 295 300 163 36.0 4e-40 MKTNQKKAWLFLAPTLIFVTVFSVWPILRAFTMSFQSGPLINLEWTGFSNYQYIFSDPEF WRAIKNTLIYAIFAVPVSLAISIMLAWFIFSKVKHSSFLETTFFMPYVTSTIAIGIVFRY IFNGEYGLLNYLLKAVHLPAPNWIDDPSMSLITIIIFGIWTSLAFDIVILMGALRNIDPN YYILADMYGASEREKFWRITMPQLVPTLAFLLTMNIIGAFKIYTSVYALFNGQAGIGNSA TTAVFYIYNKFQMVGTPGVAMAATVVLFLIILLTTFLQRKMMKKIGRY >gi|297149550|gb|ACGQ02000001.1| GENE 550 571248 - 572072 666 274 aa, chain + ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 56 273 60 277 277 172 39.0 8e-43 MKKIRIGNLIAYVVLAIFALITVFPFVYMILGGLMSYSETTTIPPTLIPHKFNWGNYAKV FAQAPFARYFLNTFITASVTTIVSLFNALLAAFALTSLKFKGKGLVQSLLLSLLMVPGEA IIFTNYNTIAKMGLLNTYLGLVLPFLTSIFYMYYLQSYFGSISDTIYKAAMINGASDWEY IWKVLVPMSKGGLFTVGLLSFISGWNAFLWPLLVTNEDSMRLLNNGLSSFASDSGSETEL QLAAATLTVLPILIVYFIFRKQIIRGVVRNDLKG >gi|297149550|gb|ACGQ02000001.1| GENE 551 572056 - 573339 1465 427 aa, chain + ## HITS:1 COG:PH0466 KEGG:ns NR:ns ## COG: PH0466 COG0595 # Protein_GI_number: 14590378 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Pyrococcus horikoshii # 9 424 4 511 514 102 25.0 2e-21 MTLKDKTTVTFYNGLTTIGGPMIEVAYNKSHVLFDLGEVYRPELNLPDESYQTLIKYQLI GDVPDFYDPAITGKQLNHEKWEHAAAYISHLHLDHSKALNLLAPEVPLYAGPITAALLPV LNKNGDFLLPAANHEKNYTRSIIPAKYKTPIKVGDITLEVWPSDHDAYGATGLVVKTPDK LIAFTGDIRLHGYHPEWVKEYLSAVKNADLFIVEGTGISWPEHIGQEFSGPKNEDELTER IVQLEQENPQRQITFNTYPTNVERLLRIIEESPRKVVLHAKRADLLKESLNKDYYYYYLP GEEKYKSLDPNLKISYQDLLKDNHKYLWQAVANYGDLMKNGLYIHSNAEPLGDFDPAYKP FVEALERQNIEFTALRCSGHADDKELREIIGLVQPRILCPVHTLHPELAENPYGERILPK RGQTITL >gi|297149550|gb|ACGQ02000001.1| GENE 552 573391 - 574698 1747 435 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 47 398 19 370 419 162 31.0 1e-39 MKFAKRLAVAGMTALALVGTTACSSSKTSSTKSNATSSVKIPKVTKKTTVVFWHAMTGVQ QSTLQKLTAEFEKKNPNITIKLENQGAYTDLQAKINSTLQSPNNLPTITQAYPGWLWNAA NNKMLVDLTPYINDKTVGWGSAKSSNIKTELLEGAQIKGTQYGIPFNKSVETLTYNADIL KKYNVKVPTTMAELKAAAKKIYEKSGHKVVGAGFDSLSNYYTLGMKDEGVDFSNKINFSG TTSKKVINYYADGVKAGYFRTAGSEHYLSGPFANEKVAMYIGTSAGEGFVKKGVGTKFTY GVAARPSKYNMQQGTDIYMFSKASAMQKAAAFKYMKFLVSKSSQLTWANATGYVPVNTAA VNSSEYKDNKSMKTPAIIAKSMKNLYSVPVEKNSNAAYSQLNSIMQNILSAAAKKQSVNS QITAGKAKFDAAWKQ >gi|297149550|gb|ACGQ02000001.1| GENE 553 574851 - 576140 1321 429 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 42 355 19 343 419 163 32.0 6e-40 MNIWKKAFLSSLVGVSLLTTACSTQKKTSAKQESNIPKVTKKTTVVFWHGMSGVQGATLK KLTDEFEKKNPNIKIKLEYQGTYINLQAKLNSTMQSPNNLPTITQSYPGWLYNAAKNKML VDLKPYIASKNVGWNGKDSDINTSLLNGAKINGVQYGIPFNKSVEALTYNEDMLKKYNVK VPKTMAELKSVAKKIYEKSHHKVVGAGFDVMSNYYLLGLKDQGINFSNKVKFDSKASKNV INYYAEGVKEGYFRTAGSEHYLSGPFANEKVAMYIGTSAGEGFVKKAINGKFKYGVAARP SKYNMQQGTDIYMFSKASAMQKAAAFKYMKFLVSKSSQLTWANATGYVPVNKQVLMDKKY INNPNMKTPAILKAAMQHLYSVPVEKNSNAAYIQAGSNLENILIAAGKKQNYSGLIKQGQ TKLENAWKQ >gi|297149550|gb|ACGQ02000001.1| GENE 554 576254 - 577177 799 307 aa, chain + ## HITS:1 COG:lin0568 KEGG:ns NR:ns ## COG: lin0568 COG0598 # Protein_GI_number: 16799643 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 5 303 4 298 301 141 31.0 2e-33 MIKEQTFPVKTIYNWYDISNLSEEDSRILQKDFNFTSDIISYISDRHERPHYDYDQYTQS HLLVYDVPIWPTPSIKHFTANPVTFLVQGNNIFTFHTELTNYVFEEFDDERMRERLSEAE DVTELLMIFLLYSSQYFQRAVTQLNIERNGLDSKLSDNINNKDLVELSNIEKGLVYLSSS IQTDLLMLHSLNKSHLNSKFTKRSLERLDDVLIESNQSAQMVRISSQVTKTLSTTSNNMM NNNLNDTMKFLTVWSILLTIPTIMTGFYGMNVSLPVFGHSLDWIMISIITVGIMAWLAYY MKRHHFF >gi|297149550|gb|ACGQ02000001.1| GENE 555 577228 - 578127 1078 299 aa, chain - ## HITS:1 COG:alr4655 KEGG:ns NR:ns ## COG: alr4655 COG2971 # Protein_GI_number: 17232147 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosamine kinase # Organism: Nostoc sp. PCC 7120 # 1 286 1 305 320 112 30.0 1e-24 MHYQIGIDAGGTHTTAIAYDLTGQELLTVETGQGNINADFDGGMANIKEAIRQIQAKLGS DCERILAGIAGISVTGQYKEVSEALASAFNTKAKAVTDSLLALYKGLKGEDGIIVIAGTG SVVNGLQNGKILTVGGYGHLLGDEGSGYAISIAGLKSALHSWDKREKNDLIDLFTKHFGV SEMNDCNQKVYRLERPEIASLARLIAELADKGSKDAQDVIFSQADLLAQDIIMGLDRFTD PKPMAIALTGSVLTNNKMLRTRVEDKVHVKYPNAKFVVSSGSNASGILFDKNDDYYTAK >gi|297149550|gb|ACGQ02000001.1| GENE 556 578282 - 579202 981 306 aa, chain + ## HITS:1 COG:no KEGG:LBA1639 NR:ns ## KEGG: LBA1639 # Name: not_defined # Def: putative beta-lactamase (EC:3.5.2.6) # Organism: L.acidophilus # Pathway: Biosynthesis of secondary metabolites [PATH:lac01110]; Two-component system [PATH:lac02020] # 1 305 1 316 318 133 32.0 8e-30 MKNRIILGAIVASVCSFALYLNNMKRYESATLTISRNQNNTQTVTEKNKQGKKQETSPVL EKITKKGNSKLASQIQKAMKNSNSYDVKVLDLKNSNNSAEVYNKKDKVNVSDSLKAFLLV GLYKEIEQQKIKAAATLTPTASEIVKGDSTFAANTVYSLTYVRQNLMSKNSNTAANLLLN KLGKEQVNNIIKEMGTRETVISNKFGESVVGTTSAEDLAILMKSLYNGKFLGNYSNTVLT GLSTYSVKSPLVNKISNANIIQIGDNTSAVALVTTDKHSYVIAVTSQNNNSFAELGLKIS TWFNQN >gi|297149550|gb|ACGQ02000001.1| GENE 557 579314 - 579862 446 182 aa, chain + ## HITS:1 COG:CAP0028 KEGG:ns NR:ns ## COG: CAP0028 COG1309 # Protein_GI_number: 15004732 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 2 166 1 169 187 57 28.0 1e-08 MVKKRTLDLSKVIAATSELIDEQGLAAVTFPNLAKRLGIRSQSLYHYIDNRTQLLSLVGA NRIKALNENLKENLVGMAGQEAILKFCDLIRDYLLKDNALAAILYHLNEYERDAEINIEL LKVIELGTKLKSDKDEPISVHALVGAVLGYVFFDRSAIFSGESSNERNSNYHQMILRLIK PV >gi|297149550|gb|ACGQ02000001.1| GENE 558 579876 - 583001 3044 1041 aa, chain + ## HITS:1 COG:CAP0102 KEGG:ns NR:ns ## COG: CAP0102 COG2409 # Protein_GI_number: 15004805 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Clostridium acetobutylicum # 1 1031 9 1030 1058 527 34.0 1e-149 MQKFIKNHVFSLIAWLLILVISIVALPNVNQLTRDHAEIKLPADTQTTIAQTFNNEWSNK TKNTYEIALVFNKKDGKLTKSNQAAIDQTISDLKENKEKYGIKNILSPNDNTATKKRLKS KDKTTWLVQLNVSKSHGTISDINKELQKAVKTKGVTTYVTGADILNDDFSASIQEGIKKT ELISIIFIFIVLVLVFRSPIVPLISLFTVGVSFLTAFSIVTNLVKSANFPFSNFTQVFMV IVLFGIGTDYNILLYDKFKENLGNGLTVGEATKDALHKAGRTILFSGSSILIGFSALALA KFSIYQSATGVAVGVAVLLLVLLTLNPFFMMSLGAKMFWPVKKFEGESESKVWTFLASNS VKRPILHIIVTFLIVTPFMALYSGHLNYDDTDEISNDTPSKAGLLVVQKHFSKGMAMPSY LYIKSNHTLDNEADLKLIDEATRQLQASKGVSLVTSVTQPYGEKVSQLYVNKQLNTVTQG VGTAQSGLTKLSNGSSQMTNGLGQLVSGSQTLTNGLNTMTSQLNSQMSTANQSQLAQLQT ALPQINQGIQELNSALRNSGASIDTTSLTNNLTDAGNNAKLIGNNLTAAGEILKQLQAST STSSADTSQILAQYRAVEDKAGLNDQQKQAMEQALMTILSGVNNKVQAQTSAATTSIEKV AANLQAAGLADQSLGNNLSNVAATLQGLSGLSSQISTLQTEVNKLATASNLALPGANQAI TKLSSGLNQVQSAVSTASNGSSQITSGAQQLYNNSPALTDGINKVNSGLGEGATYLSGLA DSAASDEFYIPKKYLKSSLFQKSINNYMSNDKKMTKIIVVLDSNPSSDKAAVKSHKLSAM VKKSLAGTDLKDAEVVMGGQSSRIQDTRQTASKDFTRTAIIMLVGIGLALIVVTRSVLQP LFILGTLLMAYFSSLTINEWFIKAVMGKDMLTWNTPFFSFIMIIALGVDYSIFLMMRYRE LDEATASERMVHASAIIGTVVISAAIILGGTFAALIPSGIPTLIEVAITVIVGLAILVIL MPILLSAAVKLTYEGFKKSKH >gi|297149550|gb|ACGQ02000001.1| GENE 559 583113 - 584093 552 326 aa, chain + ## HITS:1 COG:no KEGG:LBA1636 NR:ns ## KEGG: LBA1636 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 325 1 344 347 170 29.0 6e-41 MKRCPSCGHLLKIDEAKCTYCGHIFSKETEQNKSEYTENTQGMSRSQLQKENSSSLIQPV SKLPLKEIFQKMLLWIHKNSTIVFITGLILMVFTSIVPELGWTCLLLLLGWLFWVCKKDI PVKQYTVDKKLTADLNKTGERVGERADRQKERIISEHPEVREKIKKVQQIKLPKNASVYR WGAIFTSLLSLFIFFSKSENTNSLSRVVLDFANNQFSSSQTIFAMLVYIGWAYIVINPFL IVYRLLKKETSYRIKAFVWALIETILLFGLVNYSSRTTAVSTFGSLTKQLISSLTAIAVN YYMLIFTSVLTTALTLMNIIKDKKNI >gi|297149550|gb|ACGQ02000001.1| GENE 560 584135 - 585517 1091 460 aa, chain - ## HITS:1 COG:SPy1067 KEGG:ns NR:ns ## COG: SPy1067 COG1012 # Protein_GI_number: 15675059 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 4 459 3 459 465 489 53.0 1e-138 MSNYQSINPYTNENFAEYSNPTAQHIEESINLANCLYKKWRHESPQKRSQILDKIADNFK DNRVQMATIITKEMGKLYVESLEEVDLCINICHYFAQHGVDMLNKVPLNTSLGNAYYLKQ ATGVIMACEPWNFPLYQIIRVFAPNFIVGNPMLLKHAHNVPGCAALAEKIIKRAGAPEGS MINLYLSYQQLADVISDNRIKGVALTGSERGGASVAMQAGKSLKKSTMELGGNDPFIVLN DADDTILKNVLQDARTYNCGQVCTSSKRIIVLEDKYDQVLNELKNIFANLKPGDPMNKST TLAPLNSESAKKKLTQQVKQACEAGANISYQYPNINEKGAFFRPIILTNINKENPIFNQE LFGPVACIYKVKDISEAIELANDSSFGLGSSIISSNVAKAQEIASQIETGMTVINGRWIT APELPFGGIKNSGYGRELSELGLNAFINEHLIIDCTKSNK >gi|297149550|gb|ACGQ02000001.1| GENE 561 585645 - 586142 748 165 aa, chain + ## HITS:1 COG:L92464 KEGG:ns NR:ns ## COG: L92464 COG3613 # Protein_GI_number: 15672475 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside 2-deoxyribosyltransferase # Organism: Lactococcus lactis # 8 161 10 156 159 66 29.0 2e-11 MTEVSTGNVYLGTPFYNDAQKNRVKLAQEYLAENPTVVRVHFPFDYEFVDPEEPNPKAGI PSLKWQLATYQNDITGLVNANVGVFLYDMDNIDDGSAFEIGYMRAMHKPVILVPFTEKNN EVKKMNLMLAQGVTTLIDGNTEFEKLKTYDFNSCMSNPVTGYRIF >gi|297149550|gb|ACGQ02000001.1| GENE 562 586183 - 587034 1009 283 aa, chain - ## HITS:1 COG:no KEGG:Ldb1886 NR:ns ## KEGG: Ldb1886 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.delbrueckii # Pathway: not_defined # 1 283 1 282 286 281 51.0 2e-74 MLNIDKFVQIRKSLKLSQTELCSGICTQSTLSKFENNGLVPSFKILNQLCERMNISLSDL MGPSEEAGVTEQLIEADFSLVSYDYEKLARLMAKVKQSSLKKSDDKFHYQYLKGQVALYD KNEPMSALYYFNGILTAADLKANSIYRLLALNGCSEVYFSQKEFDKAKHYYDQIKNEILK FKVNSNEEAIQVLSILCTAGEFYGEQGDYKHSNKLLNAAYNLCATRHLVFFLARTCLRLG ENIVAQNGDIQKAKDNFYDAIAFGRLNDNQQVIERAQSALESL >gi|297149550|gb|ACGQ02000001.1| GENE 563 587036 - 587830 661 264 aa, chain - ## HITS:1 COG:L141530 KEGG:ns NR:ns ## COG: L141530 COG0657 # Protein_GI_number: 15673289 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Lactococcus lactis # 19 260 15 257 257 81 30.0 2e-15 MVVIKQNVIYDSEHDLRTDIYFPNDTSSKTKILIFWHGGGFIRGSKDECKNFGIKFANAG FMTFIPDYRLAPRYIFPAAHQDARNFIDWLLNSSYTDSDDQKNIVQIGASAGGTLALQLA GFYVFPTVTWSAPVDFSNWMKEHETVSPSPDARSELGTSAPDEIAASFYKYFTVTYIGSN NHEVLQKLDADSYDYDNLNQLMLINSSHELVELSGVFRFIPFLADSGHEVQLLTLPGSGH AMAYANDYVDESLDFLYQAIKRNK >gi|297149550|gb|ACGQ02000001.1| GENE 564 588030 - 588635 406 201 aa, chain + ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 9 195 10 197 201 155 43.0 4e-38 MRLSAEKSRKLINILTLVSFILIIALVIYWWKLGIFTDTEKMKAYLADKKIIGPLIFVLI QIVQVVIPIIPGGVSLLAGVIFFGPVWGFIYNYVGICIGSFVIFYLSRRYGKPFILHLVS EETLDKYIKWTKNQKKFNWFFALCIVAPAAPDDVLCMLAGLTQMKFWTYFWIIVLGKPWT IAAYSFGLLYGAKWLFGIFKK >gi|297149550|gb|ACGQ02000001.1| GENE 565 588632 - 589162 355 176 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116630184|ref|YP_815356.1| acetyltransferase [Lactobacillus gasseri ATCC 33323] # 4 168 14 180 193 141 43 7e-32 MIGKKIYLRHFVKEDGEQLFLWSKKTVYFEKARFTQYKDLSAAKHGATLLAQRKNSFAIC SHDNDKVIGMIELYERGASENLLNTCEVGFLLDEKYWHQGLMKEALQLVCQYAFNDLGMK EIWAGVFQDNDASIHLLGKMGFEYIYQVKYPDIFSPENKNENYYLLRPGNCKFVRS >gi|297149550|gb|ACGQ02000001.1| GENE 566 589298 - 590710 1900 470 aa, chain + ## HITS:1 COG:SP0411 KEGG:ns NR:ns ## COG: SP0411 COG0172 # Protein_GI_number: 15900330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 36 459 1 418 424 557 67.0 1e-158 MSVVLIRLNLGGTANRDPIRPSNGTGRLFYFSEVFMLDIKVIRERLDWAKEKLATRGIKP EELDEVVAIDEKRRAKLSETEALKAKRNEVSKEIANKKRNKENADDAIKAMREVGEQIKK LDEEVAELSEKQNYILLRLPNFPDDSDPIGPDESYNQEVRKWNEPTKFNFDPKAHWDLGD DLHILDFDTAAKVSGARFVYYKGAGALLERAVYNFFLDENTKEGYTEVIPPYLVNDDSMQ GTGQFPKFTEDVYTIVDNDDPDKPLNLTLIPTAEVPLVNYFRGEIVDGKKLPINVTALTP AFRSEAGSAGRDTRGLIRMHQFNKVEMVKVCKPEESWNELDKLTHNAEHLLQKLGLPYHV VALSTGDASFTSAKTYDLEVWMPAQNKYREISSCSNCTDFQARRAQIRYRDEDGKVKLVH TLNGSGLAVGRTVAAILENYQNEDGSVTVPEALVPYMHGMTKITREDTLG >gi|297149550|gb|ACGQ02000001.1| GENE 567 596745 - 597305 151 186 aa, chain + ## HITS:1 COG:no KEGG:lhv_1083 NR:ns ## KEGG: lhv_1083 # Name: not_defined # Def: putative transposase # Organism: L.helveticus # Pathway: not_defined # 1 186 100 285 285 368 96.0 1e-101 MNKKVDLNGHFLIIDSFPVPVCQPIRNYRAKIFRGYANIGYKATKKIYFYGFKVHAIVSD DGYILDYVVTKASVHDAKETVELLENAHPSNYYLLGDEGYLGKELHQQLKQMGYELWTPY RKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAY CLERFN >gi|297149550|gb|ACGQ02000001.1| GENE 568 597533 - 598912 1388 459 aa, chain + ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 8 456 9 456 458 374 44.0 1e-103 MKKEKETNASQTGYRRTLSNSHIQLIALGGTIGTGLFLGVGDSIHRAGPSVILIFIIVGF FLFLLMRALGELILSDLKKHTYIEFIEKYLGKNIGFISGYLYWISWLTLAMAELTALGIY FEYWFPHLPTWLPGLITMVVLLIINLISAKVFGNLEFSFAIIKILTILAFVVMIGYFLII GESTKYGDISLANLNAGGGFFAKGSHGFLLGFQMVIFSFIGVELIGLTAAEAQDPENTIS RAIDQLPIRIILFYVMAIIAILVAIPWPKISTTSSPFVQALSATGIKDAGSIINFVVISA AISSTNSFLYSAGRLLFSVNFDGKSKWSKTFGKLSKTQVPRNALIFSSLIIACAPLITLI IGDSAFTFISATSTSMFLIIWAIMILTHIRYRKETPRKDLKSFQMPLFPYLDYLVLAFFI AMIGLLLYLEKFRIPMIAALIAFVVLYSITKFFREKESN >gi|297149550|gb|ACGQ02000001.1| GENE 569 598961 - 599317 298 118 aa, chain - ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 114 12 125 135 118 50.0 3e-27 MVQSLNTTSDYVTKATWQRGIPCYGQIMIGDKGFEFYNDKNVLDYIQIPWNEITYVVADV HFKGKYIPRFELRTRNNGNFIFSAKQPIFVLKAIRKYIPADHMRQALSLWQKIKLRFK >gi|297149550|gb|ACGQ02000001.1| GENE 570 599320 - 600237 1326 305 aa, chain - ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 1 305 1 303 303 430 71.0 1e-120 MAENQIHLTKRDRLKVMWRSMLLQGSWNYERMQNGGWAYSLIPALRKLYPEKKDLKDALE RHLVFFNTHPYLASPILGVTLALEEEKANGKEVEDQAIQGVKVGMMGPLAGVGDPVFWYT VRPIVGSLGASLAAQGNILGPILFFIVWNLIRIAFLWYSQEFGYRVGSEITKDLSGGLMS KVTRGASMMGMFVLGALIERWVSIKFLPVVSKSPLQKGAYIDWSSLPKGAKGIQQALIQW HDQGLSLTSTKVTTLQNNLDSLIPGLAALCLTFLCMWLLKKKVSPIIIIIGIFIVGIAGH VVGLL >gi|297149550|gb|ACGQ02000001.1| GENE 571 600261 - 601058 976 265 aa, chain - ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 265 1 268 268 247 66.0 2e-65 MNAIQMVLVVFIAFLAGMEGILDQWQFHQPIISCTLIGLVTGNLTTGVMLGGALQFIAMG WANIGAAVAPDAALAGVASAIIMVQGHLSTDKIGTAIGIAVPLAVAGLGLTMIVRTLAVA ISHIMDKEAEKANYQGIEFWQLVATGLQGLRIAIPAALLLAIPSELVKSWLSAMPVWLSA GMTIGGGMVVAVGYAMVINMMASKEVGPFFAIGFALAAIQDLTLIALGAIGAALALMYLA LEGKGSNNSGSKGTGDPLGDILDNY >gi|297149550|gb|ACGQ02000001.1| GENE 572 601076 - 602071 1280 331 aa, chain - ## HITS:1 COG:CAP0066_2 KEGG:ns NR:ns ## COG: CAP0066_2 COG3444 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 165 331 1 168 168 207 62.0 2e-53 MMVGIVLASHGAFAEGISQSAEMIFGKQENFGSAILKPDEGPDDVRKKMENVINSFDNQD EVLFLIDLWGGTPFNQANKLLEEHGGNWAIVTGLNLPMVIEALSQRFSLDSAKEIATAIV EPAKDGIKTKPESLAPKESQKVEVKNQEPQGDIPEGTVLGDGHIKYVLARIDSRLLHGQV ATGWSKAMNPDRIIVVSDNVAKDDLRKNMIREAAPAGIKAHIVPIKKMVEVDKDPRFGAT KALLLFENPEDALEAIKDGVQIDTLNVGSMSYAVGKVNSNSVLSMDQKDVDTFEELKKMG IKFDVRKVPSDSPENMDSILKKAQSLLNEQK >gi|297149550|gb|ACGQ02000001.1| GENE 573 602511 - 603071 151 186 aa, chain + ## HITS:1 COG:no KEGG:lhv_1083 NR:ns ## KEGG: lhv_1083 # Name: not_defined # Def: putative transposase # Organism: L.helveticus # Pathway: not_defined # 1 186 100 285 285 368 96.0 1e-101 MNKKVDLNGHFLIIDSFPVPVCQPIRNYRAKIFRGYANIGYKATKKIYFYGFKVHAIVSD DGYILDYVVTKASVHDAKETVELLENAHPSNYYLLGDEGYLGKELHQQLKQMGYELWTPY RKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAY CLERFN >gi|297149550|gb|ACGQ02000001.1| GENE 574 603288 - 603614 177 108 aa, chain + ## HITS:1 COG:YPO2333 KEGG:ns NR:ns ## COG: YPO2333 COG2076 # Protein_GI_number: 16122557 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Yersinia pestis # 1 105 3 107 112 73 39.0 1e-13 MKEYVYLLIAIIGELIGTTLLKASDGFSKLFLGLLALFSYASCYFFFSKCLRTISLGVAY AIWSGVGIVITTVIGIILWKEKTNLITVLAIIMIIIGIILLNLTTTNK >gi|297149550|gb|ACGQ02000001.1| GENE 575 603904 - 604629 953 241 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1547 NR:ns ## KEGG: LGAS_1547 # Name: not_defined # Def: aggregation promoting factor-like surface protein # Organism: L.gasseri # Pathway: not_defined # 12 241 28 261 261 158 50.0 1e-37 MAVAAVTLTGVMATNLKSNTAHAATIVNNDTDVVTINYVPGYGIAIWDNPDNPQLKNNNK LQHATSWKVFETAYDSQGNKWYDLGGGQWIEAKWTKAGLNSVNPYVAFNQVASQSSSYSS STQASNQVANTASYANAASSNNYSSASTTSSTSTTTSTTSSYTSTATGSEADAKAWIANK ESGGSYTAQNGQYYGKYQLSISYLNGDLSATNQEKVADNYVYSRYGSWTAAKAFWLANGW Y >gi|297149550|gb|ACGQ02000001.1| GENE 576 604749 - 605318 617 189 aa, chain + ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 151 1 150 199 117 43.0 1e-26 MSKTIYLVRHGQTVFNYYHKVQGRVDSPLTVLGQMQAKVTGDFFRKNGIKFDKAFCSTQE RASDTLEFITERKMSYERLKDMREKWYGIYEGQDEVTLPWNHGSVADPTMEADFLAVDRM KRAIEYIKKQLADGETAIAVGHGAILGMYVRNIFPETNFHFENCSVVKLIFDGDKVEFAG SYCPAKGMK >gi|297149550|gb|ACGQ02000001.1| GENE 577 605583 - 606455 1019 290 aa, chain + ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 2 284 3 297 302 203 37.0 3e-52 MRRVGIIGLGNVGATAAFNLFTHGYCDEIVLLDVNEAKMQAEAIDLLDTLPVNDHEVKVY YGDWDKLRDADLIIAGFGVKVTSSSEELAINSRNAQSVGQKIKASGFNGIIINIANPCDV ITTVLQKTTDLPKQKVFGIGTMLDSVRLRRVISEKLELNSKQIGGFVLGEHGLCDFIAWS TVNHEFSDAEKAEIANEAKSNAEKLIAGKGFTNWAVTSAAMELVRAVLTDEYFYTVCSVY VEEYGIYLGYPAVIGKNGVEKIAQLSLPSDEEYHLQEAIALIKEHLAEID >gi|297149550|gb|ACGQ02000001.1| GENE 578 606901 - 607932 934 343 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00514 NR:ns ## KEGG: LCRIS_00514 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 343 6 348 349 372 55.0 1e-101 MLLLKPGFYELEQGISACDVTIKGTGASPEDTVIDGYISVSPDSRYVTLENLTINTIGER NALFIPYNADTYLTLRNCVIKTEINENAAIALNGKCTVELYSCRVINGSVSFFSGSDFRL EMNDSQIDYPVTDYCGLALEGIGTAIINNSTVNSSINTFSDTNIELVINNSRLRDVHLAG QTWLNMLNCQIYSKEDNAFTSDDECWLNIANSVFSGGMYLDGSTTMLLQNSKCDRLMAIA GTKTTMTNSLCKSHADFQQNASCDATRSTFNGSEEFEFFLAVNGEAEFKGHDIILNPNGA TLAVQDDAIFRTNVLSSDQKALSVEYTNLPNVNILGLKWEKRK >gi|297149550|gb|ACGQ02000001.1| GENE 579 608024 - 608725 810 233 aa, chain + ## HITS:1 COG:SP1446 KEGG:ns NR:ns ## COG: SP1446 COG2188 # Protein_GI_number: 15901296 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 229 6 230 235 230 52.0 1e-60 MQEPIYIKIHNQIKQDIENRVYKVGERIPAERQLAQEFGVSRMTLRQAIKTLEDEGILER RLGSGTYVSSQKVQEKMSGVMSFTQITRANGQVPSSKLLSYRITKPFLSEKERLKINEND NVLRMERIRYADDIPICFEVVTIPQKLIKNFSKHDISTSLYKTLEEKGGYKIGSVVENIG ASIANENDARYLKIHRGDALVTRRQVTTLTDGQPFEYTRAEYVAERFEFTFSR >gi|297149550|gb|ACGQ02000001.1| GENE 580 608751 - 609137 446 128 aa, chain - ## HITS:1 COG:lin1076 KEGG:ns NR:ns ## COG: lin1076 COG0615 # Protein_GI_number: 16800145 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Listeria innocua # 1 128 1 127 127 189 74.0 1e-48 MKKVITYGTFDLLHYGHVRLLKRAKELGDYLIVGLSTDEFNEFKKHKEAYNSYAERKYIL EAIKYVDEVIPEEDWDQKIKDVQKYDINTFVMGDDWKGKFDFLKPYCDVVYLPRTPGIST TKIKEDLK >gi|297149550|gb|ACGQ02000001.1| GENE 581 609263 - 610405 878 380 aa, chain + ## HITS:1 COG:MTH365 KEGG:ns NR:ns ## COG: MTH365 COG1887 # Protein_GI_number: 15678393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Methanothermobacter thermautotrophicus # 92 375 128 406 409 125 30.0 2e-28 MKSVLFGLYIRFLKLCAFFVPIRSNSFVILNGAGRSGSNGYLFYKYLRKEHPELNVTLVE PWPSSHLKWSVWKKIGGAQYIFTTHQPFKIKRKQISFSLWHGIPLKRMGFMAYNTKYHTN KHNMNIWQHQADYIASSSDIYETLMASCVGIDTNKFIRTGFPRLDFLNKPISKRIFLKDL FDSDNEKAKIGIYMPTFRYELEDRTIMNQIESGNFFAFDDFNIVALNSTLVENNQYLIVK LHPYEMKLVSAEMKQASNIAFLNNNYLNENDIDLYELLGITDFLMTDFSSIFFDYLLLNR PIIFVSNFLKQYSKARGLLMSPYEKIVPGQQVLNQKELQIILKNIDKDPYKERRNKLCTI FFEKDKNCCQSIYELTKRVN >gi|297149550|gb|ACGQ02000001.1| GENE 582 610407 - 611840 911 477 aa, chain + ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 7 466 9 468 476 140 25.0 4e-33 MKKTLLNIFYNAIYQIFLVLVPLITVPYLSRVLGPNTYGIYSSVNNTFQFLMVFCTLSVS YIGMRTISRIRAENPKKDLTEAFWGLWYFQGIAGLVTIALTVLVSIVFKVKYWNYILLMV PFLISAQLDIAWFFQGLADFGRVVLRNTIVKLISVLLILVLVKEPSDLYKYMLIMSVSTM LGSFVFWFNIRSYVGKPTKYFYKLRITSKAIITLLIPQIATQIYTSLDKPILNFFQNTTQ VSYYDNSQRIANMILGVITSITLVMMPKMASEGKEAQKKILRKSLEATVMLGTLFSVIVM VNTKEFVPFFFGEKYIPMTPLMFFFTLTIIFIPMGGVFANQFALANKRDKDYAIPVCIGA VLEVLLSIILDRQFGATGALISILTTEVIVLILRIWIVRDGYEFKYVFKDIPKYFIIGIV SLSIGMLIPQILASAFFNMALKSIIVMLIYLGLMFMMKLDFNQDILNVTNKFLRRNR >gi|297149550|gb|ACGQ02000001.1| GENE 583 611842 - 612576 784 244 aa, chain + ## HITS:1 COG:lin2665 KEGG:ns NR:ns ## COG: lin2665 COG1922 # Protein_GI_number: 16801726 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Listeria innocua # 3 243 4 239 244 176 41.0 3e-44 MPEKVDILGVKFNNYSLKGYQNEIIRRLDDKLSTFIVTANPEIVMAANENPVFMKLINQD ADFVTADGIGIIKAANILNKPISERVTGYDLFTWLLDIANQRKNKVYFIGAKEEVIDDLG KRIQKEYPNIEIVGLKNGYFKDKLDIIARDISKTKPDMVFAALGYPKQEQLLDILRKQEL PAIMMGVGGSFDVFSGHAKRAPKVWQDLHIEWVYRFLKEPSRFRRFLALPRFIEEVYRSK RGRR >gi|297149550|gb|ACGQ02000001.1| GENE 584 612576 - 613676 1027 366 aa, chain + ## HITS:1 COG:MA1183 KEGG:ns NR:ns ## COG: MA1183 COG0438 # Protein_GI_number: 20090049 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Methanosarcina acetivorans str.C2A # 50 322 65 341 379 89 26.0 9e-18 MKVLHVNAGLEKGGGLFHIINLLTEAKKEGQDFELLTLAEGPVSQKAISKGIKTHVLKTK SRYDLTSLKRLSQFINENNFDYVHTHGARANLYLSLIKKRINAKWVITVHSNPLLDFEGR GFMGWIFTKLNIKALKKADGILAITQNFANLLTEKIGINKKKVHIIYNGIFFHESSDLPA KYDHPYFNLVNVARCEKVKGQELLLKALKDLHDPHIRLHIAGDGSELENLKNLAQELNIS NQVTFHGFMSHDDLSHLYERCDLAVLTSYSESFPLVLLEAADNMVPLLSTDVGDIKKMIP SADYGFVSPIGDLDMIKEQILKASLMPSIELREMAKREKEYLMNNFSLANQLEMILQAYT KIKNEA >gi|297149550|gb|ACGQ02000001.1| GENE 585 613678 - 614373 650 231 aa, chain + ## HITS:1 COG:FN1241 KEGG:ns NR:ns ## COG: FN1241 COG3774 # Protein_GI_number: 19704576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannosyltransferase OCH1 and related enzymes # Organism: Fusobacterium nucleatum # 1 132 1 135 243 130 49.0 2e-30 MIPKIIHYVWVGGNPKPEKIQTCMKTWKKHLGDYKIIEWNESNFDIHENKYVEQAYKQKK WAFVSDYIRAKAVYEYGGIYLDTDVLVLDDLKDLLDNKCFVGFENKDNPFTAVFGAEKGH PLIKDMLDYYNDRDFEFDSSDQMAGVNTVSVSDILKDKYGAVPNNQEQVLKDDIHVYPDG ILCNPSKNSKTIHVFTGTWMEGSKPFKRKLVTFLKLRIKTKWQAGLYSKLF >gi|297149550|gb|ACGQ02000001.1| GENE 586 614471 - 615946 1551 491 aa, chain + ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 8 485 11 487 495 676 68.0 0 MFYKQIDEDDSLILHTDLYEINMMYTYFKEGISEKKAVFEVFYRKEPFGNGFAVFAGLEH IVQYLNDLHFSESDLAFLKETQDYDDDFIEYLRNLELNLTVRSMEEGQLVFANEPIVQIE GPLSQCQLVETTILNIVNFQTLLATKAARIKLAVGSDALMEFGTRRAQETDAALWGTRAA YIGGFDATSNVRAAKLFGIPASGTHAHALVQAFGNEYAAFKAYAQTHKDCVFLVDTYDTV RSGVPTAIKVAKEMGDKINFLGVRIDSGDMAYISKQVRKQLDDAGFKNAKIFASNDLDEK TITNLKMQGAKIDVWGIGTKFITAFDQPALGAVYKLVAIEDENGNWKDSLKISSNAIKIS TPGKKQVWRICANSDRKNEGDWVARVGEDPRNFNALFMFHQQYTYINKVVTNFTAKPLLK DIFIEGKYVDHPRSLAEIKAFCQANLENLWDEYKRSLNPQEYPVDLSQNLYESKIDLISE IRTKIRNRGLH >gi|297149550|gb|ACGQ02000001.1| GENE 587 615946 - 616776 1154 276 aa, chain + ## HITS:1 COG:ECs2446 KEGG:ns NR:ns ## COG: ECs2446 COG0171 # Protein_GI_number: 15831700 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Escherichia coli O157:H7 # 4 276 3 275 275 364 66.0 1e-101 MRDLQKEIIAYEHVLPEIDPEKEIRRSVDFLKDYLKAHPFLKSLVLGISGGQDSTLTGKL CQIAIDELRAETGNQEYKFIAIRLPYGVQNDASDAADAVAFQKPDVDLIVNIKDAVDKTV ESLEKAGVKVTDFNKGNIKARQRMIVQYGIAGAYSGAVVGTDHAAENITGFYTKYGDGAS DLVPLFRLDKRQGKALLKYLGCPEHLYLKAPTADLEEDAPDLPDEVALGVTYKDIDDYLE GKEVKLEAAEKIEAWWNKTKHKRELPITVFDDFYKK >gi|297149550|gb|ACGQ02000001.1| GENE 588 616949 - 619588 2952 879 aa, chain + ## HITS:1 COG:SP1551 KEGG:ns NR:ns ## COG: SP1551 COG0474 # Protein_GI_number: 15901394 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 5 877 26 908 914 951 59.0 0 MPKNYYSQSPENIEQELDTNIQSGLSSAKAQERLERDGLNALATEKGKSMFARFIDQFKD FMIIVLLIAALVSGVVAGEWTDAGIILFVVLMNAILGVVQEARSEAAIEALKKMTTPVAH VRRNGQVVEVPSTELVKGDIVLLEAGDVVPADLRLTTTESLKIEEAALTGESVPVEKDKS LISKDDVALADRVNMAYSSTNVTYGRGEGVVVATAMETEVGKIATMINEADETDTPLKQS LNQLGKTLTWMILGICALVFVVGILRNPANESQASLMIDMFLIAVSLAVAAIPEGLPAIV TIILAWGTQTMAKHKAIVRKLPAVETLGATDIICSDKTGTLTQNKMTVEKIYYDGQLHDA SEAVDANSDIMQTMLLANDTKLQADGLLGDPTETALTQFGLDKGINVADLLETKKRVQEV PFDSDRKLMSTVNKNGDKYYVAVKGAPDELLKRVSNLSDKEKEQVLLANKEMAQNALRVL GLAYKEVEKPFEAVNSQTVENKLIFAGLVGMIDPERPEAKAAVAEAKAAGIRTVMITGDH QVTAQAIAERLGIIEKGQSKRVLTGSELDKMDETYFKEHVSDYSVYARVSPEHKVKIVKA WQANEKIVAMTGDGVNDAPSLKQADIGIGMGITGTEVSKGASDMILADDNFATIVEAVKQ GRKVFSNIQKAILYLMSCNVGEVLTVFIMTIMGWDVLQPVQLLWINLVTDSLPAIALGVE PVEDGIMNRKPRGRKSNFFSGGVASSIVYQGILEGVLVLIVYTLGLHIGPHVADPKLQHG DALTMAFLTLGLIQLFHAFNSKYVHQSIFRKHTFQNKWFNWAIVISAIIMAAVELPFLTN VFKVTELDLDQWLAVLGTGCLMIIIVELVKLVQRRMGKE >gi|297149550|gb|ACGQ02000001.1| GENE 589 619658 - 620074 221 138 aa, chain + ## HITS:1 COG:L86677 KEGG:ns NR:ns ## COG: L86677 COG3091 # Protein_GI_number: 15672268 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 5 138 6 135 147 115 51.0 2e-26 MNEVELLKLIRKISLESFSYPFNGKAKINYRFKTTGGRYHLKDRHIEINAHFLKKEYRKD LIGIIKHELCHYYLHTHQMGYKHQNRDFKILLKQVGGSRYAPDIGLAKKIKYTYQCTNCH KLYYRIRRIDLKKYVCGK >gi|297149550|gb|ACGQ02000001.1| GENE 590 620464 - 620937 436 157 aa, chain + ## HITS:1 COG:no KEGG:LBA1940 NR:ns ## KEGG: LBA1940 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 157 37 201 201 121 46.0 7e-27 MPAVTTIPLTIAIYSVLLGARAGMGLGIVWGVISMFLAYTRPTSLVSIFLFQNPIIAIIP RALSGYLAGIVALKNNRLYYCLSGLISSLTNTVFVIILASVILTGNQELLAHLGHTNGNL LVLLTSALAFNGILEAIFSAILAPIILKPLIKIMQYK >gi|297149550|gb|ACGQ02000001.1| GENE 591 620952 - 621596 704 214 aa, chain + ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 40 213 32 204 209 167 50.0 1e-41 MARSRSRVKKTTLTLVKVFGVLLILVVAFVCFRYYRRQAINNELIRQEQLAREQAAAKEL KIKTDFIKKIGPIAQKADQGFALLPSITIAQACLESNYGQSELSQKYNNLFGVKSSDPNT SKTLSTKEYVNGKWITVKASFQIYDSYESSIQAHARLFQNGTTWNKDQYQHVLAAKDYKS QAKALVTDGYATDPDYATKLINLIEQFNLNKYDN >gi|297149550|gb|ACGQ02000001.1| GENE 592 621687 - 623951 2328 754 aa, chain + ## HITS:1 COG:SP1087 KEGG:ns NR:ns ## COG: SP1087 COG0210 # Protein_GI_number: 15900955 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pneumoniae TIGR4 # 6 753 4 761 763 750 53.0 0 MSRETILKGLNPQQQEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEEKGVAPWNILAI TFTNKAATEMKERVQKLLGPAGQDVWMSTFHALCVRILRRDADKIGYSRNFSIADSSEQV TLIKHIEKDLNINPKQYNPRAILSAISNAKNDLLNPKDFESASGNRPFDQVVSEIYKEYQ KRLVQDQIMDFDDLIMQTLVLFQKDKATLHYYQNKFRYLLVDEYQDTNEAQYQLCRLLAA QYSNVCVVGDGDQSIYGWRGANMENILNFEKDYKEKGVHTVKLEQNYRSTGHILSAANAV IKNNQNRKAKKLWTDQGAGEKITYYRAQSDVDEAIFVISKITEAVKAGKRDYKDFAILYR TNAQSRGFEESLVKSNIPYQIVGGHKFYDRKEIKDILAYLKLVANTSDSMSFNRIVNMPK RGIGAATVEKLLTFANERRIGVGDALSNLELVPVSAAASKKLADFNAKLVDCVSYAQDAS HTVTGLTEKILEDFGYTEALKKEKTLESASRLENLDEFLTVTKRFDDNFEAEDDESLPIN DFLSEVTLLSDQDDIEDDGNQVTLMTLHAAKGLEFPVVFLVGMEDGIFPLSRAMLEEDQL EEERRLAYVGITRAREKLYLTNAFSRTMYGKTTSNPASRFVQEIKPEDLETEYAGGFNKQ RANSVSSTSSIPFFNKDERARSQVYTSKTAAKASGAVGAEKEGWNVGDQVTHKAWGKGVV VKVNGTGEDMELDIAFESKGIKRLLAAFAPIKKV >gi|297149550|gb|ACGQ02000001.1| GENE 593 623989 - 625998 1973 669 aa, chain + ## HITS:1 COG:lin1870 KEGG:ns NR:ns ## COG: lin1870 COG0272 # Protein_GI_number: 16800936 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Listeria innocua # 10 666 4 661 671 648 51.0 0 MAKLNKKNAQEEIETLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQKLVELEKQFPELVTP DSITQRVGGEIKSDLGKVEHQVPMLSMGDVFSKDELFEFDQRIQKLVGGPVAYNVELKID GLSLSLEYVDGKLIQASTRGNGRIGEDVTKNVQYIDDIPKILPEKLTTEVRGECYMGKAA FLKLNTERDENGEAIFANPRNAAAGSLRQLDPKVTKKRNLSTFIYTWVNPPKEITSQHQA IQQMSKLGFHTNETGRKLANLDEVFAYIDEYTSKRDSLSYGIDGIVLKVDDLTLQKQLGN TVKVPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTTVSRAVLHNPD LLKQKDVRIGDTVKLHKAGDIIPEISEVVLSKRPANSQVYEIPTECPSCGQSLVHLEGEV ALRCINPACPAQIEEGIIHFASRPAMDIMGLGPKIVRQLIQHDLVKDVADLYHLTADDLA ELDHFGDKSISNLLTAIDNSRQNSVELLLNGLGIDHVGAKAALLIVQRFKNLNKIMQASV SDLTAIDTIGETIAESITTYFAQASVQKLVQELIDSGVNIDYLGEDVSEEEIVDNFFKNK TVVLTGKLAHFTRSEFTKKLESLGAKVTSSVSKKTDYVIYGTDAGSKLTKAESLKIALLT EEEAIEKIQ >gi|297149550|gb|ACGQ02000001.1| GENE 594 626007 - 627155 1026 382 aa, chain + ## HITS:1 COG:lin1869 KEGG:ns NR:ns ## COG: lin1869 COG4851 # Protein_GI_number: 16800935 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Listeria innocua # 48 379 47 370 371 210 36.0 5e-54 MIVKKFLQIALLASSMLVLAGFGRLGDSDLANNATTTNNKTKKYQTTSTNSGYTVLLKNG KYVTSSTSGLTSSDLDNTVDSEALERGLVNLDKNVFSTNKYVFQEGQKLSSSTISSWLMR ESKSYPDGLNPKNNGKTGETTRNPVILNQILEQDFLTGSGSNYKLSGISLGLALNSIDYY QKTTGGPQYSSNISRSKQEEYGKETADKIVARLRKKKEMKNIPIMISLFSKTSQDSLVGG TFFAYGVAEGNSSKITNWKSVSEKSQVLPTVNNESPVNSDDASAFNSFKSAIEDYFPNLS GVVATVRYQNDKLTQENIQITTQFYGYVQIQSFTRLVQSEAKKYLAKDVPIEIKISSVND VQAIVYKNSGDDSYSSHIYGGE >gi|297149550|gb|ACGQ02000001.1| GENE 595 627168 - 627470 442 100 aa, chain + ## HITS:1 COG:SP0438 KEGG:ns NR:ns ## COG: SP0438 COG0721 # Protein_GI_number: 15900356 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 95 1 95 100 85 50.0 2e-17 MEITKEEIKHVAALSRLEFKDEELDQFTSQMGKIIEMAEQLGEVNTEGVPETTQVVDRDT VYREDKPEHWQDRKEMLKNVPETSDGFIKVPVIIDKDDND >gi|297149550|gb|ACGQ02000001.1| GENE 596 627470 - 628909 398 479 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 20 464 21 452 468 157 30 7e-37 MNYLNETIDSLNQKLANGEVSAQELADKTIANIKETDKKINAFITVDEDAKASENLDFAN KLAGVPIAIKDNIVTNGLKTTAASHILDNFIPVYDATVVSKLKKAGATVVGKTNLDEFAM GSSNENSYFGAVHNPWNLDKVPGGSSGGSAAAVASGEIVAALGSDTGGSIRQPAAFNGIF GIKPTYGRVSRWGLIAFASSLDQIGVLTKRVQDAAEVLNVISGADEHDSTVSEKTVPDFT KALGQDVKGLRVAVPKEYMSDAVDEGVRKAIQEQIDFLKENGAIINEVSLPHTKYVVSTY YIIASSEASSNLQRYDGIRYGYRAKDTKNLLDVYVKSRSEGFGDEVKRRIMLGSFALSAG SYDKFFRQASKVRTLICRDFDKIFEDNDVIVGPTTTEPAFEIGSEVKDPIKMYNNDILTI SANMSGVPAASVPAGLVNGMPVGLQIMAKRFDEESVLRVADFIERNNKFYEKKPAGLED >gi|297149550|gb|ACGQ02000001.1| GENE 597 628913 - 630343 2012 476 aa, chain + ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 1 476 1 476 476 565 58.0 1e-161 MNFKSTIGLEVHFELKTKSKIFSPSPVTYGAEPNSEANVIDWGYPGVLPKLNKEVYRLGL MVALATHSEITPVTHFDRKNYYYPDNPKAYQITQFFEPLARNGYVEIEVRGKKKRIGIHE MHIEEDAGKNTHGTNGFSYVDLNRQGVPLLEVVSEPDMEDPEEAYAYLEKLRKIVQFTGA SDVKMEEGSMRVDTNISIRPAGQKELGTKVEMKNLNSFEHVRLSLAYEEKRQQEVLLSGG KVQLSTRRFDENSGKTVLERVKEGNADYRYFPEPDIAPYHIKQDWIDEIKAVLPKSAEER RTDYINKLGLKPYDADVILQTKEASDFFDKAMEAGADPQMTANWMNTQVNGYLNEHHVEL KDIKLTPENLAKMVTLIKDGVISSKIAKKVFAETVANGTDPKKFVEENGMAQLSDLSVLE PMVKEIVDNNPQSVEDFKNGKDRAIGFLVGQIMKQTHGKANPKIINQLLNKELQSR >gi|297149550|gb|ACGQ02000001.1| GENE 598 630372 - 631289 1004 305 aa, chain + ## HITS:1 COG:L26628 KEGG:ns NR:ns ## COG: L26628 COG1597 # Protein_GI_number: 15672402 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 4 303 3 302 342 329 54.0 4e-90 MIKKARLIYNPVSGHEQMPKNVADILNIVEQAGYEASAFRTTPEAFSAQHEATRVAKAGF DLIIAAGGDGTINEVVNGVAGLSQRPKLAIIPAGTTNDFARALRIPRDNLVEAAKVILQG KTRKMDVGQAICDDNEKYFVNIAGSGSLTELTYGVPSELKSAMGYGAYLIKGAEMLPSIS KSHMKLTYDDGVYDGDLSMFLLGMTNSIGGFEQIMPDAELSDGLFQLIVIKTADPLALLS LMVMALNGKHVNDPNIIYTKTRSLKVEMVDDDGNKVPFNLDGEIGGYLPVTFKNLQQHIE FYVGR >gi|297149550|gb|ACGQ02000001.1| GENE 599 631343 - 632608 1379 421 aa, chain - ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 11 416 2 405 412 416 50.0 1e-116 MVLSWKANLPEDLQAKIDKVDKMIAPRLAEIDEQVLHNQQRVLELFRKHRVGEEDLVPST GYGYDDIGRDKLEAIYADYFKTDDALVRSQFSSATHAIAVGLFSMLRPGDTLYYLTGTPY DTIQEVIGLAGNKPGNMKEWGINFKATELLENGEVNFEQAKKDLQDPKIKVIAIQRSLGY AVRASFTMEKIKQMLKFIKEVRPDVNIFVDNCYGEFSECEEPTFYGADLIAGSLFKNAGA GIVKGGAFLVGRKDLIEGAGSRLNVPGAGKGEGATWGYLRDMYQGFFMAAHTTGQAIKGM IFTAALCEEMGMNVAPKWNDPRTDIVQTVTFGKPDPMVKFCGAIQHYSPLNSFVDPIPYH QDGYEDDVVMASGSFTEGSTIELSSDGPLRPPYRLYIQGGLSYEHVKIAISHAVEETFYK K >gi|297149550|gb|ACGQ02000001.1| GENE 600 632624 - 634714 1839 696 aa, chain - ## HITS:1 COG:VCA1063 KEGG:ns NR:ns ## COG: VCA1063 COG1982 # Protein_GI_number: 15601814 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Vibrio cholerae # 80 696 98 719 720 582 44.0 1e-166 MTFLKIAVDSTIDLPQLSEWQQIPLTDIKNPAEIVAFIVNKNNPIKLATVQHLQKESGLP IPVIQVNSKVSSEDISTIISAITEYINKNIPGYLRDLVNFAQDQPISFTTPGHHNGLYYD KHPAGVIMNKFFGKNLMYADTSDTVPELGDMMTHSGTPLTAEQKAAQTYHADKVYFCTNG TTSANSICASAVLRKDDLVLFDRNNHKSLYNSALVMTGAKPVYIKTDRNPLGLIGEMDPE CLNEDYLRREATKIDPVKAKQKRPFRMAVVQAETYDGVFYDAKWIVDKIGKLCDYILFDC AWGGFEEFIPIMEHLSPLLLDLSPEDPGILVTQSLHKQQAGMAQTSQILKKDSHIKGQKR YVDHKHFNHAYLKFVTSSYSYPIYASLVANTYLVSGPGNQKWWDDTLRMGIEWRKKLLGK SKLFKPLVCDNFVQIPTEKLMTNSKYWNLSPTDTWHGFNRITSGEAMIDPMKITVVTPGI DITNNKYENDGIPGPIVAEFLMEKRIIRAKNDLNSLLFLLTPGDRQTDLDALLDAFLEFE KFYFEDAPLEKVVPKLAKEYTTRYRGYTLKQLCHEMHSYYATHQTFKLQKALFEKENMQN YSMIPSEADNLFMHNESKLISLKDVVGQIAAEGALPYPPGVFIVAPGEKWQEIDKEYFEV LVGAMENFPGFVPEIQGVYWTQGTNGKINVEVEVLK >gi|297149550|gb|ACGQ02000001.1| GENE 601 634932 - 636395 1347 487 aa, chain + ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 16 478 9 471 473 337 39.0 2e-92 MKEDTFNLDLNKKHYLTWPVIALIDFVTIISFENIFYPFQNQGLSVVISWVFLLFSYVIP YALISSQMSLTFDNQEGGLASWVRRSSNDTLGYWTSWMYWVQSVPYIVDVSNSVIVSFSW IILGNNSLDKKMSTFWFGLLTFVIILAFILLENRLRNSLEILSLIGGGAMFIMSMLFVAL AAWAVMHGGHKIATQPFNWGAFKPSFSLNYFSTTGLLIFAMSGAELAAPYVSQMKNPKRD FPKAMWMLAIMTGFLTIFGTLALAMFFNAHHIPHDFKMNGPYYAFRLLGESLGMGKILMY LFAVVQAIFMMAQLAVLLDASSRVFAGDVADKFMPKWLTKKNKNGRPIHSYTFTVGLSLF LLLLTGTLPNINTIYNWLLNINGIISPYKTCWVFFAFVAMRMQQEKYKSDYVFIKNKTGA LAVGFWCLIFTFICATLGFVPQNVDFGTAEFNHQLVLNIITVIVLFGLGFILPWMRKREK KREENKY >gi|297149550|gb|ACGQ02000001.1| GENE 602 636527 - 637498 1061 323 aa, chain + ## HITS:1 COG:PA2218 KEGG:ns NR:ns ## COG: PA2218 COG1073 # Protein_GI_number: 15597414 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Pseudomonas aeruginosa # 4 322 50 367 367 323 50.0 2e-88 MQVLNIETKWDKVFKKSNKVDHKKVTFPTRFGTILVADMYIPKNANEKLPALAVSGPFGA VKEQSSGLYAQKMAENGFLTIAFDPSFTGESTGTPRYMTSPDINTEDFQAAVDFLSNNDL VDPEKIGIIGICGWGGLALNAAAIDTRIKATVASTMYDMTRLIANGYFDKEDKESARNQA RKAINKQRTIDFREGQYKLAGGVVDPLPDDAPDFVKDYYAYYKTKRGYHKRSLNSNNGWA VTSALSFLNSKLLAYAGEIENAVMITHGTKAHSFYMGKDAFGKLKGDNKVFLPIEGATHT DLYDQIDKIPFKEMTDFFNKYLN >gi|297149550|gb|ACGQ02000001.1| GENE 603 637512 - 638384 398 290 aa, chain + ## HITS:1 COG:no KEGG:LAR_1792 NR:ns ## KEGG: LAR_1792 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 279 1 279 280 381 63.0 1e-104 MKLIKEAYYEGERPLFKRKDTQIIDTTFGKGESPLKESRNISLNNSLFTWKYPLWYSKNI EVEDTTFESMARSGIWYTHNIKITNSSLQAPKLFRRSSEIVLDRVHFSDAQETLWSCKDI KITNTTINGDYFGKGSQNIYLDNVDLVGNYCFDGAKNVEVHNSRFISKDAFWNCENVTIY DSKISGEYLAWNSKHIKFINCTIESEQGLCYIDGLVLEHCKLLRTNLVFEYCKNINADII SDVISIKNPISGKIIANSIGEIIRDDSEIDSKQTFIKSRHCNLELLKEAK >gi|297149550|gb|ACGQ02000001.1| GENE 604 638384 - 639547 1069 387 aa, chain + ## HITS:1 COG:CAC2970 KEGG:ns NR:ns ## COG: CAC2970 COG1168 # Protein_GI_number: 15896223 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Clostridium acetobutylicum # 1 382 1 381 384 296 36.0 4e-80 MYSFDQMPNRRGTNSIKWNVKDHELPMWIADMDFGVAPEIIQAMQDKIKLGAFGYESVPD SYYDAIVNWQEKQHNCQIKKDWILFVSGVIPALSSAVRRLTHPGEQIVTLTPVYNIFFHS IENNGRKSLEEELEYDANSHEYRINWSSLEQKLADPLTKMMILCNPHNPIGKSWTYEEIE KIAQLCNKYHVYLFSDEIHGDLVLNDSFSSSLKLPDNLKQNLIIAFSPSKTFNLAALHSA SVVVPNSELRFQIYRAINNDEIAEPNLLAIPATIAAYTQGSTWLHELKAYLLKNRQYIAN FLENELSQLNLASEFATYLAWIDISNLNINSQELADFLKENTGLIISSGQEYRGNGDNFI RLNFACPQSVLKEGLGRLKKGINSEKA >gi|297149550|gb|ACGQ02000001.1| GENE 605 639534 - 639728 58 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297205583|ref|ZP_06922979.1| ## NR: gi|297205583|ref|ZP_06922979.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] # 1 64 1 64 64 75 100.0 7e-13 MKKHKKRFWILAGLILLIIICLGIFIGLRKNQPTKAALSKATATVFFHGWGSQVGMLKSR WRII >gi|297149550|gb|ACGQ02000001.1| GENE 606 639713 - 640393 721 226 aa, chain + ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 14 225 77 286 289 126 35.0 4e-29 MANYLVSHKYASSIVVADVDYQGHVKYSGTLPAKTKHFIVEVNLQNNKSVSPNGGMTYSQ SSNYVADVLASLKKKWQIKNVNLVAHSMGNLQVIYFIKNHAGSSKYPKINKLVDIAGHYN GIIGMDEPKDTSLEANGKPKMMNDTYRDLLSVRNTFPKNIQVMNIYGNYKNQGDGSVNNN SSKSLRYLVQKRAKSYEEREIKGYGAQHSRLHENKEVDQLLLKFLK >gi|297149550|gb|ACGQ02000001.1| GENE 607 640458 - 641090 646 210 aa, chain - ## HITS:1 COG:YPO1163 KEGG:ns NR:ns ## COG: YPO1163 COG0670 # Protein_GI_number: 16121459 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Yersinia pestis # 1 205 26 233 236 103 39.0 2e-22 MYGFMLIAVLVSAASSYLTMTVFRSAIMNMPQAMFWVIIFLPFALCLGISFKAAKNPTLG FTLLMFLSVVYGVEFSIIASYYTGTTITSAFLSAAGVFAAMALFGTFTKRDLSNWGSYLR AAMIGFIVATLVNVFFVKSGAGAYIFSYIGVLIFTGWTAYDANSAKRIFIEYGDQVSDSG LAIMGALNMYLDFINLFMLLLEIFGVNDRR >gi|297149550|gb|ACGQ02000001.1| GENE 608 641313 - 642680 1284 455 aa, chain - ## HITS:1 COG:BS_nhaC KEGG:ns NR:ns ## COG: BS_nhaC COG1757 # Protein_GI_number: 16078033 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Bacillus subtilis # 2 445 4 450 453 290 38.0 5e-78 MKKKIGFGESISILILLLAILGTSVIKFGINPEVPVLFVAALIIFWAKIRGFSWDEIQDG IKEGINIAIIPIFIFILIGALIAVWIKGGIIPSIMVLGFHLISGQFFVPSVFLVCSIVGL AIGSGFTTISTVGIAFLGIGASMNQNLALVAGAIISGAVFGDKMSPLSDSTNLSSAVAES ELFAHIKNMMWSTIPAFLGSLILFAFLGNGGHINLTKIDKTVSTLNSNFSVSWWALLPII LMFVCAWKKIPAIPTLFANIILTTIMIFIQDTKMTIPKLTDLLMNGFIAKTDNSQVNALL SRGGISSMMGTVALIVSTLSLGGLLMKFGIIQEAMEPLVEKLPKAGSLILVTILSGIGIN LFVGEQYLSVILPGRAFKGAFDKVGLHPLALSRVLEDGGSVINYLIPWGVAGSFAAATLG VPVLAFLPFTFFSLLSPIFSILSGFTGIGLKWNKK >gi|297149550|gb|ACGQ02000001.1| GENE 609 642938 - 644383 1723 481 aa, chain + ## HITS:1 COG:SPy1346 KEGG:ns NR:ns ## COG: SPy1346 COG2265 # Protein_GI_number: 15675282 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 30 481 8 462 462 414 48.0 1e-115 MSNKKLKKDDILLASNATDFLVLYIIAILEKVDIMQKNQLVELEITDLSYEAMGVAHLDG MTIFVNNALPGEVVEAKILKVKKSFAFAKIENIIKQSPDRVTIKLNQWVQTGLASLAHIK YEKQLEFKRQQVINLLEKAHLNKKVNETVASPEEVGYRNKAQVPVRNVKGKLEIGFFRKH SHDLVPMENFFTTDPEIDRVLVATRDILRKNHVPAYDEVKNKGEVRYLEVRRSKANSDMM VILVCLHKDFPQLVKVADEISQISGVVSVILNHNPKKTNVILGKHDYLLAGNPQIEDKIG DIRFKISAQSFFQINSLQTPRLYNLAIEKAGLSKKDTVIDAYSGIGTIGLSVAKHVKQVY GVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPNWVNEGMKADVIFVDPPRKGLTPE FIEASVKTNPQKIVYISCNPATMVRDLTMYQELGYDFEEITPVDMFPQTPHVESVTVLEK K >gi|297149550|gb|ACGQ02000001.1| GENE 610 644384 - 644980 393 198 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256852246|ref|ZP_05557632.1| ## NR: gi|256852246|ref|ZP_05557632.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 198 1 198 198 376 100.0 1e-103 MYTKKKQQQVEDVLLTQIVVTSEANNIFKYDGKIYSSQSYNSGLDPDMSDFAVTFYEIIY NKKIIRDGQIINTDFAGDTINTGIYKKGQRKKVKLKNRHCLANFWAIPYIHGRKREKPKR DYLDSYLTFVEEKILIQDDNFKEYHDFNEFKLAQFIPEGINSNTLVSQEISIKDRAQLLA KSEIGKTLWQYFNEHCLF >gi|297149550|gb|ACGQ02000001.1| GENE 611 645031 - 647586 1646 851 aa, chain - ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 836 4 861 883 161 24.0 4e-39 MKKRTWIFAGFLAGLIFFIASWIGSINFLMGGTIHSGDLIDQYISFFAYFQHTLLHDFSS ISFSFSNGLGGNTAGNWGYYLLSPFNFIALLFPTKFLPQALYIIILLKVMVASASFCWMS KKLHHLADPWAISLAVAYALSSYVITYIGNLMWLDAIAFLPLLVVFVTQLSKGRFSFPYI LLLAITIVANYYTAFMVCLFLVGFFIYQSYLNYSNWKNLLRNSLYFSIASLTAGALAAFS IAPTAFNLLENKLNYSLASPNISFFHVWQELPATMLFYTRSWQLPLLFVGTITLILTISF FFNRSIPIKVRLASLLFSLFTASGLLNGKLYILWHASQPPQLFPYRFVFLITFIMVFFAS YQLANHNSKADLKISTACFLFFLAFYFFRSRKLLFLNAAACFLALLIALISLALVILYYT KKINPWIPAAFLILEMFLSATIFWNNIKQPSTNITNYTAQTQTFINQLPKTAKDQRLAKS FLLNNDRGESYTFNYRGAEVFSSNNDPKISDFYSLLGLPGYGYFYFYSTSTQLTDALFDI KTFITTTRLTDSIVGFKNYGLRNDLKKNKVWYKDKYNTAYQCNTFPLAFAGYKANNLKLA IKQPLENQTKVLNALTGSKQVYFSKPISAQITSTNLVVKKDKNQLNYQSKKAILSTLTFT YKAKPNSVGYIVLDNNQLYTTQISKLTVNNQEICLMPITYQPIGVYVPKSGKVTLKIKLK KEISKGSLLNPELYLLNKQALNKTISNAQNNRLKLSKWTNNQIEGTVNIKQGQSLITTIP YTSGWKAFSDGKPVKIVKTLNRFIALDLPKGKHKVTLKHTMPGLKLGIIISILGLISVVT EYWVLKKNREK >gi|297149550|gb|ACGQ02000001.1| GENE 612 647714 - 649624 1978 636 aa, chain - ## HITS:1 COG:L73239 KEGG:ns NR:ns ## COG: L73239 COG0488 # Protein_GI_number: 15673044 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 635 1 635 635 524 43.0 1e-148 MIIAQGHALEKQFGATTLFKDINFSIENNARIGLVGPNGVGKTTLLKIMTGEEESTKGEF TVNKDIDVGYIAQENALDEDKSIWDEMITVFAPLIKQGETLTKMQEQIADNPEDSDLLKR YDQMQFDFEQNGGYTYQADIKSVLNGFNFKENTWTKKISSLSGGEKTRLSFVKLLLKKPD LLLLDEPTNYLDLDTLDWLEGFLKNYDGAILTVSHDQYFLDHLATQIFEMRYGKLTIFKG DYTHYLAERKLRDAQQEAAYEKQQEEIKKTEEFIQKNIVRATTTKRAQSRRKQLEKMDRI DPPKHSNKVRINFKADRPSGKEVLIAQDLTIGYPDKTMVSDISFQVNKGDRVAIIGPNGI GKSTLLKTIMKKLAVKSGSIKYGASLDIGYYDQELQGLDYKKTVIDTIWDRHKSMPEKDV RSILASFLFTAKDIDKVVGQLSGGQRARLTLTVLALEHDNFLIMDEPTNHLDIEAKEVLE QALSKFDGTLLFVSHDRYFINQLANKIISVRTGHAKLYEGNYEYYLGEKNKPVNQLPEQV TKTETKVSENKLSYQEQKKLDSQKRKLQRTVDDLEAKIDELEQKEADIQTEMANPEIASN FDKLGPLQEDLSKVQAELDQATNDWEQAVNDLDNFG >gi|297149550|gb|ACGQ02000001.1| GENE 613 649798 - 650439 774 213 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 2 207 4 209 215 255 60.0 4e-68 MDKIKIPKATARRLPLYYRYLILLNEEGKEKVSSTELSEAVQVDSASIRRDFSYFGALGK RGYGYDVKSLLGFFKKILNQDTLTNVALIGVGNLGHALLNYNFKRSNNIRISCAFDINSD LTGKIVSGVPVYDMKDMIEQIREQQITIAILTVPQINAQKTANEIVEAGVRGIMNFTPVR LSAPAGVRIQNVDLATELQTLVYFLESDKKIED >gi|297149550|gb|ACGQ02000001.1| GENE 614 650624 - 650908 348 94 aa, chain + ## HITS:1 COG:BH0561 KEGG:ns NR:ns ## COG: BH0561 COG0234 # Protein_GI_number: 15613124 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Bacillus halodurans # 1 93 1 93 94 96 59.0 9e-21 MLQPIGDRVIVKVKKEEEETVGGIVLASNAKEKPTEGEVVAVGSGLVTSEGKVLPMTVKE GDRVVYDKYSGTNVKYDGEEYLVLHEKDILAIVK >gi|297149550|gb|ACGQ02000001.1| GENE 615 650936 - 652561 1599 541 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 540 3 543 547 620 58 1e-176 MAKDIKFDEKARRSLLKGVDKLADTVKTTLGPKGRNVVLEKSYGAPEITNDGVTIAKAIE LKDHFENMGAKLVSEVAQKTNDIAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIE KATKAAVDELHKISHKVSGRDEIAQVASVSSASEEVGNLIADAMEKVGHDGVISIEESKG VNTELSVVEGMQFDRGYLSQYMVTDNDKMEADLDNPYILITDKKISNIQDILPLLQEIVQ QGKSLLIIADDVEGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLQDIAALTGGTVIT EDLGLELKDTKIDQLGQAGKVTVTKDSTTIVEGGGTKEAIAERVDSIRKEIENSTSDFDK EKLQERLAKLAGGVAVIKVGAATETELKERKYRIEDALNSTRAAVEEGYVAGGGTALVDV KKAITKLTSDNEDEQTGINIVLRALSAPVRQIAENAGKDGSVILDHLMSADPEVGYNAAT DKWENMVKAGIIDPTKVTRSALQNAASIAALLLTTEAVVAEIPEEKPAAPANPAAGMGGM M >gi|297149550|gb|ACGQ02000001.1| GENE 616 652684 - 653541 864 285 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 3 283 7 293 293 170 37.0 6e-41 MFEDQKFYGFTNDEIFGSIMQNKRFCKAIIQAALPDVNVVSVESIDAQKELGTKSDKISK SVRLDIAVKDKAGNLYDVEMQVNNNHDIGPRMRYYQSSMDRDTLDRGEPYTSLSRTYLIF LCAFDPFGKGKLRYSFHLYDDENKSIQLKNNAENIIINSKGSGSEDVDLLNLQKLMNDDK IESKGIFKEIQNKIQEYNDDPKRRNLMRTAELRMKEETAVAEKRGIERGREKGDKNTVKA LTLTIKEMRPETNETDVFKQIKKTVGPDFSLSDSDIQAIIHQNMK >gi|297149550|gb|ACGQ02000001.1| GENE 617 653720 - 654553 580 277 aa, chain + ## HITS:1 COG:no KEGG:LJ1297 NR:ns ## KEGG: LJ1297 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 277 1 270 271 142 36.0 2e-32 MEIGAALKVTRKKLNLSQSEMAGNILTKSYYSKIERGIHEINAQDLIDILNLHGIRIQDF FEEFNFEKNTFGKSNFDHLHRLVGNAYYQKDTDGLLKVIDAIDKFPNSQNNRLARGLRVE AKLLYQGLKYGPEKIDEETIREVKQLMFNSDNWDELSLTLLSVSLSFFKNDELSAIIKAI VTRNKPDKLTSRNREIVSSILINYLAYSYNRKITKGAALSLTFSWLSELDSSPKNCLTKI YANYFQMLLSGNKEKANQIRQFLNDNGMEDLTRYLAR >gi|297149550|gb|ACGQ02000001.1| GENE 618 654645 - 656210 1103 521 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 5 504 2 514 535 152 25.0 1e-36 MIYQNYSKFKFFWLNFFGLIYSTENIIMAYMVGSLTNMATKREFSSLPLLFIQMVVVFTI VLISNLIFNYLKADAIKTTNVKLRTSVLKGMLTSKHEDSANLGFLTNDFKLLETNRYEAE IQILFYSYTVVLALGYSLYLNWMLTLIFLVGASLPAIVSNFFQKQIQTSSVAWTKANDKY VNQTKHLLAGTEVFNLFNKRNAAVAQNRVTVDNLEDKLAKMNLAKNNTNAFLNIIAMGGT FLVPFSIGVMLVIQGQTTLGALFAIIQLSNSFVNPILQILSERNNLTTTKDIVEKIKQLS AQGQKAEKAAISDFNSLEVKDVNLSRQGNKLANGISFTLKKGEKLAVIGPSGSGKSTLLQ FLLYGDFGKASELKLDDAFVKAGAFSNLFSYASQKAIIFPESLWFNLTLGAELAESEVRA VCEQLDLGDLVREKGFDYQLGDNADQLSGGQLSRIGLARAILAKRPVLLLDEINASLDKK TAADVENYLLNSDLTFIEVNHHYDSESLAKYDQVVDFSKYM >gi|297149550|gb|ACGQ02000001.1| GENE 619 656368 - 658449 1734 693 aa, chain + ## HITS:1 COG:Cgl0713 KEGG:ns NR:ns ## COG: Cgl0713 COG1479 # Protein_GI_number: 19551963 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 1 692 1 693 811 476 38.0 1e-134 MKGSEKRLISLYDGSNVRMIIPVYQRNYDWTRDNCRQLFDDLVSLIKNNRQNHFFGSVVE MGTQEGIGEVSIIDGQQRITTVYLLMLALVKLLEEEKITSTDPQLARRIRASYLEDEFQP EDKKLRLKPVKNDEMALKRLFKDEKDYLLSSNLTNNFRYFYERILDQELTADELFKAIQK LMIIDISLKQGEDDAQLIFESLNSTGLDLTEADKVRNYVLMNQPVKVQESLYENYWNKIE VNTNYEVSDFLRNYLTFNLKRVPKIQKVYLEFKKYSEKNDSDIEELLSDLERYSEINRDI SNASTGEREVDEVLHRLNILDMRVIKPFLLPLINYWKLNKIDSKTLIGSLKVVETFIFRR TMCSFPTNALNKIFATLFSETIKLTNQGNTEFLPVLSYILINKADSSRYPKDSEFLKSFD DKDIYDMNKNARKYLFDRLENQDSREHVNVVDNMQDGNYTIEHIMPQTLSDSWKNALGSD YKRIYTQWINKLANLTLTAYNSKYSNRSFIEKKYIDNGFDQSGFRLNDFLKNCNQWTEKE LLARNDYLKELALKLWPYPESNFQPKQREKVSRTLDEDYDFAGTKIVSYTFKGTPYQVKS WIEMYVNVIEALYEIDPTPLYKIIAMHATKGWKFYLSGTEKNEFTKVADDLYVYGRTNTW NKLNVLNKLFQIYGIDPAELVFEINEKKIRNDN >gi|297149550|gb|ACGQ02000001.1| GENE 620 658504 - 660036 1726 510 aa, chain + ## HITS:1 COG:XF2742 KEGG:ns NR:ns ## COG: XF2742 COG0286 # Protein_GI_number: 15839331 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Xylella fastidiosa 9a5c # 8 508 16 517 519 574 56.0 1e-163 MASKSNDLKFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLKSDYP EDAEDSDAYLADNIFWVSPEARWDNIQKAAKTPEIGEVIDHAMESIEKDNESLRGILSKN YESPDLDRSRLGGVVDLISDINVGGKEAKERDILGRVYEYFLQKFASNEKKNGGEFYTPR SVVKTLVEMVEPFKGTVYDPCCGSGGMFVQSEQFVQEHQGQIADLSVYGQESNPTTWKLA KLNLAIRGIDNNFGAHQADTFTNDLHKGTHFDYILANPPFNVKKWGGEKLKDDPRWKYGI PPEGNANYAWIEHIISKLNPDGKAGFVLANGALSTTLKEELAIRKNLLEADKIDAIVALP DKMFYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMVDRTHREFSDEDIKKIA DTYHAYRGTNEQKYEDMAGFCKIAKLDEIAKNDYVLTPGRYVGLVEQEDDGEPYEVKMAR LTAELKKQFEESDRLQDEIKDVLKELGYEI >gi|297149550|gb|ACGQ02000001.1| GENE 621 660026 - 660565 508 179 aa, chain + ## HITS:1 COG:jhp0414 KEGG:ns NR:ns ## COG: jhp0414 COG0732 # Protein_GI_number: 15611482 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Helicobacter pylori J99 # 7 177 11 178 409 152 49.0 3e-37 MKYKVGEIGKVIGGGTPSTKHEEYYTSSGKGIAWLTPKDLSSYSKMYIDHGSRDLTSEGY NNSSAKLLPKDSVLISSRAPIGYVAIAKNEIATNQGFKSIIPDKSKVYPEYLYYLMLENK LNLEKVASGSTFKEVSGKVMKEFEVEIPSLSKQEKILNQLIPIQRKIELNNQINDNLAA >gi|297149550|gb|ACGQ02000001.1| GENE 622 660562 - 661167 400 201 aa, chain - ## HITS:1 COG:no KEGG:Mmol_0228 NR:ns ## KEGG: Mmol_0228 # Name: not_defined # Def: restriction modification system DNA specificity domain protein # Organism: M.mobilis # Pathway: not_defined # 4 199 194 386 397 146 42.0 4e-34 MPSDWNYVSLKDYAEVTPGYSYKGKELSPSHLAMATIKNFDRNGGFNARGFKEINPQKEI KVQKYANLYDVLVAHTDLTQNAEIIGNAEPILTCGNYDKIIFSMDLVKVTAKENKISKFL LALIMQGDIMKRHCLTYVNGTTVLHLNKKALKDFEFPFPENPQVISNIANFAEENYKKIN SNLRENDLLIKIKSELLNKYF >gi|297149550|gb|ACGQ02000001.1| GENE 623 661278 - 664388 2900 1036 aa, chain + ## HITS:1 COG:XF2739 KEGG:ns NR:ns ## COG: XF2739 COG0610 # Protein_GI_number: 15839328 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 1 1032 15 1050 1058 775 39.0 0 MNSIKEESIEKDALETLAKQGYQVIKSEVYNHTSKIIDAERNNDHTKFILEPRLAKVLKE LNPGYSDDIYRRALHEFSKLADNPDMMINNHYMHKLLIEGVKIKTSENGENKTVTLHAID FDNWENNDFLATNQFEIVQGEKSRRTDITVFVNGLPLITFELKKPDNENITVKEAYEQLQ TYKAEIPDYMKYNEILIASDGVNARVGSLTAGFDRFMRWRQPKNELVPEGSLELDILIEY MLKPKTLLNIIQNFIIFETNGDSTVKILTAYHQYYMVNKAVVAAERALKSNSDKRIGVVW HTTGSGKSLSMVFFSGIVARKLGNPTILVINDRNDLDDQLFGTFAQAHEYLQQTPDHAEN RDEVRDYMSRNSGGIVFSTIQKFSPDFERGENEMPVLTNRSDVIVMADEAHRTQYGLQAE LTKNGVRYGYAKYLRDALPNASFIGFTGTPIDTADKSTVAVFGNYIDVYDITQSVADHAT VRIFYESHIIPLKLKSGSEEKFNELMNEYDLNTEASDSEKEARNKELTKLEAIAGAKQRL EAIAKHFISHFEARQKEEFGKSMIVEISRINAVKLYNEIIKLRPNWESSDIHKGKIKIVM TSSPSDGPELSKHNTSKQDRRILQQRMKDNSDELQIVIVVDMWLTGFDVPSLNTLYVDKP MKGHNLIQAIARVNRVFKNKESGLIVDYIGIADSLKLALSIYSKDDKDQVGINVEKVLAL LKDKYNIIKNDFLYGIDYSGFDSKDDIVRTRTVNKVANELIAEDKETIQKFCDVVTEAQK LYALVAIQPAAQEIGPEIAFFRLVKVFIMKLLSNNDDHERKNIDYRLRQMIDQSIIAEPE VDVYKSLGLEKPRLDTISPEFLKKVQNLNEKSLAVRILEKILRGQIKICLQMNIVQGKKF QEMLEASIAEYNKRGINTEIVIRELIEMAQKINAEQEKGKDLGLTPEEIAFYDALANHEK AVQVLGEEKLHLIAKELVKTVKANAGVDWERRAAVQAKMIMAVRHLLRKYGYPPDISADA TKLVVSQAKQMAIGPI >gi|297149550|gb|ACGQ02000001.1| GENE 624 664646 - 667228 2846 860 aa, chain + ## HITS:1 COG:BS_mutS KEGG:ns NR:ns ## COG: BS_mutS COG0249 # Protein_GI_number: 16078767 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus subtilis # 1 856 1 857 858 838 50.0 0 MAETTPMMKQYYDIKSQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKSENPI PMAGVPHQAVDSYVNTLVEKGYKVALCEQLEDPKQAKGMVKRGIIQLVTPGTMMNEGPNG AKESNYLTSVFSTKSGFGLAYSDLSTGEIFTTHLKSFADVLNELLSLRTKEVVFEGSLSD SQKDVLKKSNITVSTPIQDQEKHAEVSYAIQKLSNQAEKDATKQLVIYLLVTQKRSLAHL QIAKSYEVSQYLQMSHVVQNNLELVASAKTGKKMGSLFWLLDKTNTAMGGRLLKQWLARP LLSISEIEKRQKIVQAMLDNYFTREGVKDALKGVYDLERLTGRIAFGSANARELLQLSRS LDAIPQIQSALFESGDEDLANFAEQIIDLSELAKKIKDTIVENPPILTTDGGLIREGINE QLDRYRDAMNNGKTWLAQLQAQERKATGIENLKIGYNKVFGYFIQVSKGNVAKVPEGRYI RKQTLTGSERYITPELKEHENLILEAENKSTDLEYQIFSDLREYIKTFIPKLQELGNTIA SLDALTSFATVAEENNYCRPSFHQDSQEIKVVAGRHPVVEKVLADGSYIPNDIQMADDTS VFLITGPNMSGKSTYMRQMALIAVMAQVGSFVPATEAALPIFDQIFTRIGAADDLISGQS TFMVEMSEANEALQNATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKTLFATH YHELTDMEKTLDHLKNIHVGATQENGKLIFLHKILPGPADQSYGIHVAQLAGLPNKVLRE ASKMLKRLEAQGANGLEPASLQLDLFNEKNDSEETTSDEAISDTEKQVIEDINNLYLADK TPLEVMQLVASWQQDLKDED >gi|297149550|gb|ACGQ02000001.1| GENE 625 667228 - 669096 1948 622 aa, chain + ## HITS:1 COG:SP0173 KEGG:ns NR:ns ## COG: SP0173 COG0323 # Protein_GI_number: 15900110 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pneumoniae TIGR4 # 1 620 1 635 649 460 43.0 1e-129 MAKIHELSETLTNQIAAGEVIERPASVVKELVENAIDAKASQIEIEFIDAGLKEVIVRDN GSGIASEDLDLAFRRHATSKISKERDLFKIATLGFRGEALASIVAVSHTEVITSTDGIKG VKAEFAGGEKLSEETHASTKGTEIKVSDLFYNTPARLKYLKSPRTETMKIVDIVNRLALG HSEVAFTLKNEGKLLLKTPGNNNLRQDLANIYGRFIAKDMIEFSKEDPDFKVSGLLSTPE TTRSNRNFVSILLNGRYIKNYQLTKAILAGYGSKIAQGRYPIAVILIELDPFLVDVNVHP TKEQVRLSKEKELSRLITEGISTALLENTSQVSALANLNKEVDRQDQLAFNLNKNVVDTT RTYEEKPAKEEKQIADQEANYVDLNQVREDDRYVLTASWDKNVAIQVSLTPFTSKDTDSS EDSLLTKGDEKIAYSLPYLTYCGQVGAYILASNEDDLYLIDQVSAQRALKYRDTLKQMQE KDYQQTLLTPLVLDFGSEDYLEIKNHLSELKELGLILEDFGQNSLLLPSYPLWLKDESER NIRELLDLFLTSKKDNLTSIKSSLAKAEVRRQVRKEKLTKEGAQNLLEQLASLADPYHDP FGQLIIVKITDTELDHMFKKGE >gi|297149550|gb|ACGQ02000001.1| GENE 626 669099 - 669680 723 193 aa, chain + ## HITS:1 COG:lin1568 KEGG:ns NR:ns ## COG: lin1568 COG0632 # Protein_GI_number: 16800636 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Listeria innocua # 1 191 1 201 201 164 48.0 9e-41 MYEYLEGTVTIITPSFIALDVGGQGFKIFSAKPYSYSEGQRIRVYVEQVVRDNDISLYGF ESSDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKTASQ IVLDLKGKLGSYVEQDLFTADTSQALSDALLALSALGYTKKEVEKVKPKLEKSSFDTADE YIKEGLKLLLKKK >gi|297149550|gb|ACGQ02000001.1| GENE 627 669712 - 670722 980 336 aa, chain + ## HITS:1 COG:SPy0038 KEGG:ns NR:ns ## COG: SPy0038 COG2255 # Protein_GI_number: 15674280 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pyogenes M1 GAS # 8 331 9 328 332 407 63.0 1e-113 MDEDSRVVAGEEEQGDLQDELSLRPQSFSQYIGQKRVKSEMEIYIQAAKKRDEALDHVLL YGPPGLGKTTMAFVIANELGVNLKNTSGPAIERAGDLVALLSDLDPGDVLFIDEIHRLAK PIEEILYSAMEDYYVDIVVGEGSTSHAVHVPLPPFTLIGATTRAGDLSAPLRDRFGIVEH MQYYTIGDLEKIIQRSSEVFATKIGKEAAHELARRSRGTPRVANRLLKRVRDYAQVKEEN KISLATTKYALDQLQVDNEGLDLTDRKILRTIIEAYHGGPVGIRTLAANIGEDTDTIEAV YEPYLLQHKFITMTPRGRVATQKAYLQLGIPLPEES >gi|297149550|gb|ACGQ02000001.1| GENE 628 670791 - 671165 550 124 aa, chain + ## HITS:1 COG:BH1229 KEGG:ns NR:ns ## COG: BH1229 COG1862 # Protein_GI_number: 15613792 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Bacillus halodurans # 11 96 3 85 88 70 37.0 1e-12 MNISFMAAAAGFGSYSTILMMVVLVGFTYFFMIKPQKKRQQQAMDMLSKLKKGDKVILVS GLHAKIDSVNDKNKTVVVDADGIFLTFSKMAVRQVVEAAPEQEVKPAETEEKAASEEEKA NEDK >gi|297149550|gb|ACGQ02000001.1| GENE 629 671280 - 672707 1686 475 aa, chain + ## HITS:1 COG:SP1243 KEGG:ns NR:ns ## COG: SP1243 COG0364 # Protein_GI_number: 15901104 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 475 7 483 495 426 43.0 1e-119 MTILGGSGDLAHRKLYPALFNLFEQGLIKDNFAVIGTARRPWSHEYLREQVIDAVHENDK NVDENHLKQFASHFYYQSHDVTNTEHYQAIKDLANDLDSRYSAQGNRIFYMAMAPRFFGT IATHINDQKLMGSGFNRIVVEKPFGRDLASASELNEEIKASFSEDSVYRIDHYLGKEMIQ NILPMRLSNPLIKYIWSGEFIKNVQVTLAENLGVEARGGYYETSGALRDMVQNHIFQIIT LLAMGEPTALSSEAIHAKKQELLDSMVIPSVDEVKKTFVRAQYAGTDDTFGYLQEPNVDP DSKTETFAAGKVKFTKGPLANVPIYFRTGKKMREKKNRIDIVLKHMNNLYGQAHSNNITI IIDPKSEIYFTINGKRISEPGIRRENLAYEFSDYENSLVPDGYERLLHDVFVGDQTNFTH WSEIAKFWEFIDAVEAAWQSENESVEKLIQYPQGKLGPKQAGEIFESPTERWIYE >gi|297149550|gb|ACGQ02000001.1| GENE 630 672707 - 673822 894 371 aa, chain + ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 7 366 8 364 364 315 46.0 1e-85 MDLLPKNDFHRKIIHLDMDAFYASVEMRDNPALKNKALVIAHDPREYNGHGVVATANYLA RQYGINSAMPAIEAVKRIPKDKLVFVTPNFDKYRQVSAQVHEIMHAVTDQVESVALDEAY MDVTSNKLGNYSAIELGSYMQERIYKELQLGASFGVSYNKFLAKMGSEYAKPFGRSVILP QEALTFLADQPIKKFPGVGKKTQGTFQALGLKTGKDLQKLTVKELTTLFGKFGYQLALHA HGIDFSPVKAQRKRKSIGKENTFLPVLFDQNEILRNLRNFAESISKQLKEKKLQGKVVTI KVRTPDFVTKTKRKTLSQFTNDEQIIYQASYELLNQIDYRTAGIRLLGISVSQLENNRYT EINLGLFSTDW >gi|297149550|gb|ACGQ02000001.1| GENE 631 673886 - 674845 709 319 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 8 307 6 305 311 277 47 6e-73 MSNTTFDEIYAKIKEYDTIILHRHISPDPDAIGSQAGLGRSIKLAFPEKRVLYAGVDWGD LTWINKGDDIKDEDYKGALVITTDTADRPRVSDQRYDMGDFLIKMDHHPNVDPYGDLYYV NDQAPAASEIIADFLISQKMPITAEVALPIYAGIVGDTGRFMYPETTAHTFEIAAMLAKT GIDLTQIARNISDVTFKQAKLQSSVLDYMTVDKSGAAYAVLTQADLKKMGVTTEEASVTV STPGRIKDILTWSVIVELEDGTYRVHYRSKGPVINGLAAKHNGGGHALASGAKAKDEAEI KQIFAELIDVTNKYKEEHE >gi|297149550|gb|ACGQ02000001.1| GENE 632 674838 - 676196 1570 452 aa, chain + ## HITS:1 COG:L0340 KEGG:ns NR:ns ## COG: L0340 COG0513 # Protein_GI_number: 15672392 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Lactococcus lactis # 5 447 3 444 446 370 43.0 1e-102 MNNIFLDSRINENLQAGLAKINFQKPTKVQSEVIPVFLTGKNMLVQAATGSGKTHAYLIP ALNEVITSSQTTQVVVTAPSRELAQQLYTVARQLRDASSLDISISLLAGGSDRDRQISKA ESKAPQVIVATPGRLLDFAKKRIINLENTKCFIIDEADMSLDLGFLGDIDQVAARMPKTV QIAAFSATIPVKLDNFLRKYMQKPERIIIENPAVIAPTIKNDLLDIGSKDRKNILFKLLT MGQPYLALVFANTKQKVDEVAKYLQDQGLRVAKIHGGITERERKRTLRLVRQGDFQYVVA TDLAARGIDIDGVSLVINYELPKDLEFVIHRIGRTGRNGLKGHAITLIREEEMNLVGQLE HVGVQFDFVELKNGELVERTHYHRRNQRSATNHKLDNRLIGYVKKAKVKKKPGYKKKIKK AIAEDAKQKRKLEKRHEARVQKRRRKRKRVDK >gi|297149550|gb|ACGQ02000001.1| GENE 633 676423 - 679059 3329 878 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 872 1 870 879 941 55.0 0 MKKLTSSEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKN RRITSSQKSIRTNDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL DKDKLFCTVYPKDVDSQKVWEKAGMPKDHIIKLEDNFWDIGEGPCGPDTEIFYDRGQENN DVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLERVLSILQD APTNFETDLFLPMIHETEKMSAGKKYGANKEDDIAFKIIADHVRAVSFAIGDGALPSNSG RGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKIMESHYPEVLKQASFIQKVIKNEED RFGATLESGLSLLDDLIEKASASDDKTISGKDAFKLFDTYGFPYELTFEAAQDKGLKVDK AGFDKEMDAQKERARKARGDLQSMGRQDETLMNIKDKSEFEYGVYEEKHAKLIDIVVDDK LVDKADGETATLIFDKTPFYAERGGQVADHGDIYDQNGDLVAKVTDVQHAPNDQNLHFVD LVLPMEKGKEYVLKIDAHRREGLRHSHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFD FTAIDPMTPREIETVERLVNQKIWENIDVKTTITDPETGKKMGALALFNGKYGDKVRVVQ INDFSIEFCGGTHCSNTAQIGIFKIISEQAIGAGMRRIEAVTSEKAYEYLTNRDALLEEI KQEVKATKVEDIKTKITSLEEELHASQKKAAELESEINAAKASDIFENVQEVNGLKVIAA MADVNGMNDLRELADNWKASNKSDVLVLACANDGKANMVISLADAALDKGLKAGNLIKVA APVFGGGGGGRPNMAQAGGKNPAGLKEAITAVINEINK >gi|297149550|gb|ACGQ02000001.1| GENE 634 679115 - 679372 412 85 aa, chain + ## HITS:1 COG:BH1268 KEGG:ns NR:ns ## COG: BH1268 COG4472 # Protein_GI_number: 15613831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 85 1 86 90 107 67.0 8e-24 MSSLDKTMHFDFNQNKGKNVYDTLQDVYNALEEKGYNPTNQIVGYLLSGDPAYIPRHNDA RNLILKHERDEIIEELVKSYLGKDK >gi|297149550|gb|ACGQ02000001.1| GENE 635 679372 - 679818 443 148 aa, chain + ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 136 139 155 59.0 2e-38 MRLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKIVREYDVTGFVLG LPKNMDGSDGASVNRSKNYGKRLEEKFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRK EVIDQMAAVLILQNYLDLKRRNTDGSNN >gi|297149550|gb|ACGQ02000001.1| GENE 636 679802 - 680116 483 104 aa, chain + ## HITS:1 COG:BS_yrzB KEGG:ns NR:ns ## COG: BS_yrzB COG3906 # Protein_GI_number: 16079792 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 12 99 5 90 93 73 50.0 7e-14 MAATINPGDDKDRQITLIDDQGNEELFEVLFTFHSDDYDKSYVLLYPAAIAEDEDIEVQA FSYDANADGDVTSSDLHEIESDEEWAMVQGVLNTFLDDDRLSGE >gi|297149550|gb|ACGQ02000001.1| GENE 637 680165 - 682525 2930 786 aa, chain + ## HITS:1 COG:BH3106 KEGG:ns NR:ns ## COG: BH3106 COG1193 # Protein_GI_number: 15615668 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 4 786 3 785 785 597 43.0 1e-170 MNHKILKILEYPRITEKLAQEAITDTAKKQARDLQPSDNSVQVRIMLAQTRAVANLLRIR GQLPIVNFKPLDGSLKRLKVKASLNAEELANILLILTLAKEINDFIEKNVDAELDLRAID KILEDLDVPTELLSELKHSIDFDGSVLDSASNELAKLRHDIAANEEEIKNKMASLTKSAS KYLSEGLVTIRDDRYVLPVKQEFKGKLGGVVHDQSASGQTLFVEPEAVLNLNNRQQSLLA QERKEIRKILKHLSALAGEDREQLRNIGIALTELDFLQAKAKLAKKMKASEPMISDNHEV LLRQARHPLIDPEKVVPNDISLGIDFDTMLITGPNTGGKTITLKTLGLIQLMAQSGLFIP TNENSQVGVFGEIYADIGDEQSIEQSLSTFSSHMNDIIYIMKHVNKNTLVLIDEIGAGTD PEEGASLAIAILDELREHGAKIMVTTHYPELKLYGYNRDRTTNASMEFDVKNLTPTYLLQ VGIPGYSNAFAITRRLGMNEKVVKKAESLTKDSDSELNKMIARLNEQTKEVTAKRKFLAK NLEKSEELLKKLQDGLDIYNQRLQKQLEFANERANEVVAKKRKKAEAIIAELEKQKASGA AIKENKLIDAKGNFNKLAKEADNLANNKVLKREKKRHNVAVGDQVKVLSYGQVGTITKKL SEHDYEVQMGIVKLKVTDRDIEKEASKAPKKKQTIVRTTRKLNRANASSQLDLRGQRYEE AMVNLDRYMDTSLLAGLGSVVIVHGIGTGAIRQGVWQYLKSSRHVKSFNYAPANEGGNGA TIVELK >gi|297149550|gb|ACGQ02000001.1| GENE 638 682617 - 682928 517 103 aa, chain + ## HITS:1 COG:lin1196 KEGG:ns NR:ns ## COG: lin1196 COG0526 # Protein_GI_number: 16800265 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 101 1 102 103 127 59.0 4e-30 MVEALTDQNFAEETKEGVVLTDFWATWCGPCRMQSPIIDQLAEERQDVKFTKMDVDENQS TAKNLGIMAIPTLIIKKDGEVVDRITGYTPKEKLDEILDQYTD >gi|297149550|gb|ACGQ02000001.1| GENE 639 682976 - 683371 452 131 aa, chain - ## HITS:1 COG:no KEGG:lhv_0448 NR:ns ## KEGG: lhv_0448 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 131 5 136 137 152 60.0 5e-36 MQENNEHSYFINQLYRDFLLPTILGEDTKEILYWAGKKIANKYALSDTDSLIDFFQMAQF GDLKLISEKRVGATFELSGQIVEDRLNSDTKDFELEAGIISACLASENQRDCESNVVIND KEKKVQIIAQY >gi|297149550|gb|ACGQ02000001.1| GENE 640 683460 - 684257 840 265 aa, chain + ## HITS:1 COG:L0120 KEGG:ns NR:ns ## COG: L0120 COG0796 # Protein_GI_number: 15673264 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Lactococcus lactis # 1 261 1 263 271 209 42.0 6e-54 MDNRPIGLLDSGLGGLTVLKKVMKKLPNEATVFIGDQAHMPYGDKTTEEVIELTRKSVDF LLSKNVKVIIFACNTATAAAMEVIQKEIAPKIIGVIQSGSLAAAKITKNNKVAVIGTHVT IESHAYSKEIKFRNPDIKVTELATPKLAPLVEAQRDFAYNVDVVRDSLDSLKGKDFDTMV LGCTHYPIIEKEISEIVGSTIKLVDPADQVAQYTENILKRDGMLAGEKGKHEYYTTGDCK KFTEIARKWLDDPQLVANHVETGER >gi|297149550|gb|ACGQ02000001.1| GENE 641 684257 - 684874 424 205 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Shigella sonnei Ss046] # 1 198 1 194 197 167 46 7e-40 MNKVLLFATNNQNKVKELKAAFQKAGLDIEIKTNADLEAAPHVSENGSTFEENATLKAHT LAEFSKLPTLSDDSGLVVDKLNGAPGVHSARYGGEAHNDARNNAKLLASLGGIPEEERSA KFCSTFVLSMPGHFDKDLVVTGECEGVVLAIPRGHDGFGYDPLFYVPEKGKTFAEMTTDE KNEVSHRGKALKQLVEKLPAWLEQF >gi|297149550|gb|ACGQ02000001.1| GENE 642 684885 - 685064 301 59 aa, chain + ## HITS:1 COG:SAS044 KEGG:ns NR:ns ## COG: SAS044 COG1942 # Protein_GI_number: 15926943 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Staphylococcus aureus N315 # 1 55 2 56 62 63 54.0 6e-11 MPFVHIELIKGRSPEQLENLMKDVTDAVHKNTGAPKEHIHVIINELGPHTYGQGGQWRA >gi|297149550|gb|ACGQ02000001.1| GENE 643 685093 - 685914 838 273 aa, chain - ## HITS:1 COG:lin1012 KEGG:ns NR:ns ## COG: lin1012 COG0668 # Protein_GI_number: 16800081 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Listeria innocua # 4 269 3 268 281 144 34.0 2e-34 MYTLTSKIFSNWSIDWSSYLNNFINVIWQLAITTAIFLLINNFGKRVITKYFLKGKVKLN KRSQTIANLSTNIFQYTTLFFYLFGVLSILGVPVGTLIASAGIFSLALGMGAQGFVSDLV NGFFILSEDQYNVGDLVKIGTEKGTVVRLGIRTTCIKQVDGSLTYIPNRNILLVTNLSHG GTGGDIELNLLAKNDLNKVNELINQVNKQLKRNEKFLSTPPKNYGVTKQEGPNVTIQVHL QVIGGDSTEIKNNYLSSYIQAFQDAGIEFAHLT >gi|297149550|gb|ACGQ02000001.1| GENE 644 686030 - 686455 534 141 aa, chain + ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 11 126 9 119 135 71 38.0 6e-13 MLISYGALAGLIAAVAFLLFVLFTIPVLLRTTKTLKKVEQTMDITNDALGKMSNDIDDIM KQTNDLLDKTNDLLEDVNSKMKTVEPVVQAAADLGESVSDLNSSSRKLATRFSEVNIKKT GLMTTILTSILARRRRRRGLD >gi|297149550|gb|ACGQ02000001.1| GENE 645 686477 - 686806 483 109 aa, chain + ## HITS:1 COG:no KEGG:FI9785_505 NR:ns ## KEGG: FI9785_505 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 109 1 109 111 107 61.0 1e-22 MKKLGAFVFGTVVGAAAGLAAAAYLLPDETLEDLKQKINDNDTLNDLKKKYDNSTEIVKN QLAAFPKNVEDDSELKDFDDIVIDSTKHNLGSNENDDNETLSDLENAEK >gi|297149550|gb|ACGQ02000001.1| GENE 646 686846 - 687958 1400 370 aa, chain - ## HITS:1 COG:L96847 KEGG:ns NR:ns ## COG: L96847 COG0006 # Protein_GI_number: 15673631 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Lactococcus lactis # 3 361 4 359 362 365 50.0 1e-101 MNLDKLQNWLAEHNVDAAYISNPITIAYFTGYEMEPEERIFALLAFKDAEPFIFCPALNV EEAKHSEWNGDVYGYLDHENPWQIIKSLVKKRTNSFKHWAIEENNLPVERYNFLRQAFNN SDFDTNLSEFIDHLRLYKTPEEIEKLKAAGAEADFAFQIGFDNIATGVTERYIAGQIDYQ LKLQKGVMHQSFETIVQAGENASNPHLGPTMNQIKPNELVLFDLGTMHKGYASDSSRTVA YGEPSDKQKEIYEVDREAQQAAIEAAKPGITAAELDAVARDIITKAGYGEYFIHRLGHGI GKNVHEFPSIMQGNDLVIEEGMCFSIEPGIYIPGVGGVRIEDCGVVTKNGFEPFTKTDKA LKYIPLRDKK >gi|297149550|gb|ACGQ02000001.1| GENE 647 688107 - 689102 1065 331 aa, chain + ## HITS:1 COG:lin1640 KEGG:ns NR:ns ## COG: lin1640 COG1609 # Protein_GI_number: 16800708 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 6 331 3 333 335 305 50.0 7e-83 MHKQEVTIYDVAREAKVSMATVSRVVNGNNNVRKETRDRVMEVINRLHYQPNAVAQSLAS KRTTTVGLIVPDLTNLYFAELSKGIDDIATLYKYNIILSSTENKLLREDQVIQGLLNKQV DGVIYMGDRLSDEAAAAFERTNTPVVLAGTIDSREQFASVNIDYPKSDKESFNLLLENGC GEIALILADAEASINKENRIRAYQEFVEEHNLTKHIYQDIYSYQDGYDLYGKLEEDGIEG AVVTRNLSAVGIMNAALDDGKKIPDDLELITSNATVISEVVRPSLTNIKQPLYDIGAVAM RMLTKLMANEELEEKHMVLPYELVEKGSTTK >gi|297149550|gb|ACGQ02000001.1| GENE 648 689147 - 690553 2105 468 aa, chain - ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 3 465 4 469 469 395 47.0 1e-109 MELDYKKLALAKKDDILKDLGELIAIDSSEDLANASEEYPVGPGPVKAMKKFLSFAERDG FDVQNFANYAGRVNFGEGKKRLGVIGHMDVVPAGDGWVTDPFKMIIKDGKIIGRGSADDK GPALAAYYGMLILKEAGFKPKKKIDFVLGTNEETNWVGIDYYLKHEPTPDQVFSPDAEFP IINGEQGIYTLVMNFKEVPGTGSVELLTFKAGIAANVTPQKAFASIKAANLSEIKSEYEK FLSDNKLEGKFEIAGDTANLELVGQGAHASAPQVGRNAATFLAVFLDTLDLAGTAKNYIH FLSSVEHEDFKGEKLGVAHHDDLMGDLSSAPSMFDFKKGEKAELLDNIRYPQGTDPDKMI KQVTEKYGDILEASFDGFEEPHYVPGDDPLVKTLLSVFEKQTGLKGHEVVIGGGTYGRLF EHGVAFGAQPEDAPMVMHQANEYMKVDDLIASIAIYAEAIYELTKDAE >gi|297149550|gb|ACGQ02000001.1| GENE 649 690610 - 691989 1039 459 aa, chain - ## HITS:1 COG:lin0625_2 KEGG:ns NR:ns ## COG: lin0625_2 COG0584 # Protein_GI_number: 16799700 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Listeria innocua # 28 257 1 224 243 83 26.0 8e-16 MKLKKCLSWGLFLCLIFIINCGFLVVGHRGDPTKYPEETIQSDNSAFDSGADYVELDLHI SKDNIAVVSHDDDLERMVGTNAIVSQNTFETLSKLQYSNGEHVISLEQLFEYYKNKPNAK FILETKVDHGVDKSNNLEKVIATSIKKYHMENRVMIHSFSAKSLYYFSQLLPNVERIFIV GSLKRINYDTLQYVNAVNVSSDLIKKYPNLVKWLHGSGKKIFVWAEMDESPKLWNWLINN NIDGVVTNFPATGFKYKVAKEGSKQIEINKDATYLGFTNAKTIMNPYQPVANKTKLSFLE SIHVVNSVQVGNQLYYQLGGNSFVKADYISFDLNYDNLNPYFNAQVKSPSHTKVKVYLTP DHLSYLHKHLSFNKSYKIYGFSGTSKNLWIKTNLGWVQAREILFTNLPINSFAFSRYQLL DANTRYNNIELLSFTVLHDSYTHQFNPNLKSFLNHKALS >gi|297149550|gb|ACGQ02000001.1| GENE 650 692069 - 692386 313 105 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0441 NR:ns ## KEGG: LGAS_0441 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 5 105 3 108 108 136 66.0 2e-31 MNQNYQTFDMIEEITRNDGSTYYEITNVEQNGIAELACDRGMIKEVRLLQLNIARTNALK TYEAYINKTYKFPTLTTLTKWEEWDKPKGKVLDAYNLILKSNHIG >gi|297149550|gb|ACGQ02000001.1| GENE 651 692396 - 693784 1365 462 aa, chain + ## HITS:1 COG:lin2502 KEGG:ns NR:ns ## COG: lin2502 COG0737 # Protein_GI_number: 16801564 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Listeria innocua # 1 451 2 457 463 292 34.0 9e-79 MEKIRILHTNDLHSHFEKFPKIKRFLNAAQQDNTVDQVYTFDAGDFMDRSNPLSDATNGH ANIELMNQFNYDAVTIGNNEGISNPHEVVEHLFDYAQFPTVLANLREEDESMPKWCTSYK IFTTKKKTRIAVIGLTAPYPMTYGPNHWHVKMLGEVIPDLLTTLKGKYDILVGLTHIGVN LDSWIADKFPEFDLIVGGHTHTLLETGKWVNNTLIVQTGKWGRYVGDVNLIVDDHHKITS MKACVHETAQMAEQAQDLAESKALFEKGKQLLEREKIADLPALFADDKEEAVAVSLDAIA DFAGTDLAMLSTGLFLTPFKQGIMTRFDLQTCLPHPMHVVRTTLKGSDLWRLVMEIEKNR HFLRKFHLIGMSFRGKVFGEVYYRNIQVDMKTRLVYVNGEEIDPDRYYQIATLDHYILIP FFPTLAVVGENEFLFSKVLSQVIGEYLAKKYPIKKGEVSGRK >gi|297149550|gb|ACGQ02000001.1| GENE 652 693771 - 694328 330 185 aa, chain + ## HITS:1 COG:SP0767 KEGG:ns NR:ns ## COG: SP0767 COG4470 # Protein_GI_number: 15900661 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 23 159 24 160 170 69 32.0 3e-12 MEENKHENTPILHHPLASVARLGDKLIINGRQYTIIANEKDAVDLELLRQKYDPYLDQYD FLVGDISSEHLRLKGFFQDWVRTSIDKKVSTIVDYLTEYCNPGSGYFILQLDEDNTHNEV SQSFKQKKTYNVRFRSKNNYHKKKNNSHYFRERKVKKTKFNSKKDYAQTKKGKHHVFVIK KRKDR >gi|297149550|gb|ACGQ02000001.1| GENE 653 694335 - 695099 964 254 aa, chain + ## HITS:1 COG:BS_yutF KEGG:ns NR:ns ## COG: BS_yutF COG0647 # Protein_GI_number: 16080282 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Bacillus subtilis # 1 252 1 252 256 219 42.0 3e-57 MKQYQLFLIDLDGTIYRGKDTIESGVNFVKRLQEKRLDYIFLTNNTTRTPQMVVEKLAGH GINTDIQHIYTPCMATSSYILSERKSAKVYIIGQIGLWNELLSHPEISFDDQNPDYVVVG MDTDLTYHKIRTAVRHIRNGAKFIGTNSDLNLPSGDELLPGNGSICKMIEVASGQKPLFI GKPSNIIVEKLLEKTSYHKQDCLIVGDNYLTDIHAGFNSGVDSLLTLTGVNKREDIIDKR QPSYIVNNLDEFEL >gi|297149550|gb|ACGQ02000001.1| GENE 654 695096 - 695701 575 201 aa, chain + ## HITS:1 COG:L157321 KEGG:ns NR:ns ## COG: L157321 COG4478 # Protein_GI_number: 15673126 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 16 194 9 190 205 97 38.0 2e-20 MKRKKLIGNNAYNPIFHFFMGVASAVTGTILLSWPLLALFVKVQKTYETVNLTVGQVMHN YSQLLWFLLWPFKQELKMDNFASSANAIEHFTECKHLFELAVIVFILGLIVLRFKSNFDY LSKTWALIFMLIPVVVVPFAVANFDTFFVTFHHMIFHNNNWLFNPLTDPIINVLTEGFFA ACFSIFGIIYELYFARFLLNK >gi|297149550|gb|ACGQ02000001.1| GENE 655 695747 - 696598 1045 283 aa, chain - ## HITS:1 COG:no KEGG:LAF_0297 NR:ns ## KEGG: LAF_0297 # Name: not_defined # Def: two-component response regulator # Organism: L.fermentum # Pathway: Two-component system [PATH:lfe02020] # 1 280 1 278 283 285 51.0 2e-75 MNFYIVDPNKENRDNLRNLIEADYDSIVVGTAGESNRAYSEIIQLHIDILIINYNLDEKE KGLELINKLKNVGSRPRFLMICPKLSSQEMQNIYDSSVDLIIASPLNLVEARQMIRLISS YAILLNRLNQIYEISSSSIAPYTRPQALHREQTDYIAQVLRFLGIAAEAGIDDIMKICNI MCDQNIEFSQINFERDLHITEHDKRIIFQRIRRSLKVGISNLANMCIDYPENDILLDYAN NLFEYRNIHSEMRKLNGENAKPVQISLQHFFNGLLQESYRVKK >gi|297149550|gb|ACGQ02000001.1| GENE 656 696863 - 697864 1591 333 aa, chain + ## HITS:1 COG:SA1012 KEGG:ns NR:ns ## COG: SA1012 COG0078 # Protein_GI_number: 15926752 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Staphylococcus aureus N315 # 4 333 3 332 333 502 72.0 1e-142 MAFNLRNRSFLTLADFNTREMEYLLNLSEDLKKAKYAGTEQQHLKGKNIALIFEKASTRT RCAFEVGAKDQGAHVTYLGPSGSHIGYKESVKDTARVLGGMFDGIEYRGFSQRSAETLAK YSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKEYRDIKFAFVGDGQDNVSNALMLGSAVM GMEYHVVTPKELNPDPEVLAKANKIAEKTGAKIVVSNDIKEGVKGMDVIYADVWVSMGEP DEEWERRIKLLKPYQVTKEVMEATENPHAIFEHCLPAFHNLDTAVAKKIKDKYGLSEMEV TDEVFESPQSVVFREAENRMHTIKAVMVATLGD >gi|297149550|gb|ACGQ02000001.1| GENE 657 697878 - 698792 1222 304 aa, chain + ## HITS:1 COG:SA1013 KEGG:ns NR:ns ## COG: SA1013 COG0549 # Protein_GI_number: 15926753 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Staphylococcus aureus N315 # 2 302 3 308 310 387 66.0 1e-107 MKVVVALGGNALGKTPEEQLKLVKQTAKSLAGLIKAGHQVVISHGNGPQVGQINLGLSYA AEHGEGASFPFPECGALSQGYIGYHLQQSLKNELPDKDVATLITQILVDEKDHAFQNPTK PIGSFYSKEEAEKLAEEKGVTFKEDAGRGYRQVIASPLPEKIIELNSIKTLIENGTIVIA GGGGGVPVIKTESGLKGVPAVIDKDRSSALLADNISADTLIILTAVDYVYVNYNKPDQKT LKDLSVSEAKEYIAEKQFATGSMLPKVEACLSFVENHPERKAIITSLAGLDDALAGKLGT VIHN >gi|297149550|gb|ACGQ02000001.1| GENE 658 698839 - 700065 985 408 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 5 407 6 409 409 384 49 1e-105 MTSGIHVTSEIGKLKTVMLHRPGKEIENITPDYMERLLFDDIPYLPIAQKEHDYFAQTLR DQGIEVIYFEKLAAEALADEKVRHEFLERMIAESGYIAGATKEALMEYLGSMNVQDMVNK IIEGVRIEDVEIKNPDLQSLSEDTDWPFLMDPMPNAYFTRDPQASIGNGISINRMTFKAR QRESLITEYIIKYNERFAGKVPVWRDRNHATHIEGGDELVLSNHVLAIGISQRTTADAIQ DIAKNLFKDSDYDTIIAIHIPHNHAMMHLDTVFTMINYDQFTVHPAILNEDGKVDNWVLH PGKDGEITIEHHTDIKAVLKEALNKPEIDLIATGNGDKIVAPREQWNDGSNTLAIAPGEV VTYDRNYVSNDLLRKHGILVHEVRSSELSRGRGGPRCMSCPIVREDID >gi|297149550|gb|ACGQ02000001.1| GENE 659 700122 - 701540 1803 472 aa, chain + ## HITS:1 COG:L94890 KEGG:ns NR:ns ## COG: L94890 COG0531 # Protein_GI_number: 15674017 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 2 461 4 476 490 331 41.0 2e-90 MEKEKGISRVELIALIVSSCIGTGIFGITSDVSKAAAPGPALLAWLFVGLGILALVLCLN NLSQKRPDLEAGIFSYAGAGFGPLGEFISGWSYWLSAWLGNIAFATMLMSAIGTFVPLFA GGQNVPSIIGAIIFCWLLTILVNHGVESASFINFIGTIFKIVPLVLFVILMVIFFKGGMF TTDFWGQVLNNMSKGTVTGSIGEQVKGSLMTMIWVFIGVEGASVMAHRAKTRKEAEQASI IGFILLVLIYVLISILPYGTLTRAQLASAGQPALGYVLKNVVGQWGATIINLGLIVSTII SWLSWTMLPAETTMLAAEDKAMPKVWGKVNAKGAPTASLYITAILQTLFLFSLLFTQEAY EFAYSLCTAAILFSYLLVGLYQMKFSAGRKEWGQFTIGLLAAGFQLACMFLAGWQEVLLV SISFIPGFIIYYQACRENRRSISLSEKLVMGVILLLSLVSIMFIMTGVIKIG >gi|297149550|gb|ACGQ02000001.1| GENE 660 701657 - 703084 1005 475 aa, chain + ## HITS:1 COG:L94890 KEGG:ns NR:ns ## COG: L94890 COG0531 # Protein_GI_number: 15674017 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 466 1 479 490 330 42.0 3e-90 MRTIKKRAIGKLELVALIVSSCIGAGIFGITTDISTAAAPGPAILAWLFVGLGILFLVLS LNNLSQKRPDLESGVFSYAHEALGPLAEFIAGWTYWLSDWLGNIAIATMMMSALGTFFPI FGNGQTIAAILFAIVVGWILTYLVNEGVENAAFINTIGTFFKICPLILFLIFVIISFKAG LFTANFWGNAFDNLNGSFKVGNLWSQIRASLLTMIWVFIGIEGASVMAHRAKTRKEAEFA SIVAFILLFLVYVLISILPYGVMTQAQLAKAGQPALGAILTKLIGWPGTIIINIGLIVST FISWLSWTLLPAESTMLLARDKVLPPFWGKTNKKGAPKDSLILTASLQSIFLFSLLFTKQ AYEFAYSLCVAASLFTYLFVCIYQMKLSRKENNWGQLLIGLLGALFQLCCMILAGWKQVL LVTVSFIPGFYLYYKARKYYQKTISLSEKLVMIFLLLLSILAIYLVIAGTIKISG >gi|297149550|gb|ACGQ02000001.1| GENE 661 703180 - 704625 1859 481 aa, chain - ## HITS:1 COG:SP1894 KEGG:ns NR:ns ## COG: SP1894 COG0366 # Protein_GI_number: 15901721 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 480 1 480 480 642 66.0 0 MKLQNKVMLITYPDSMGHNLKDLNFVLENYLKGAIGGLHILPFFPSAGDRGFSPMTYDKV DDQFGDWSDIEALSSKYYTMFDFMINHLSKHSEYYKDFVKNKDKSKYKDLYLNWDKFWPE NRPTQADVDLIYKRKDRAPYQTIEFADGSKTNIWNTFGEDQLDLDIRTDTTKKFVKDNLV NLANHGASLIRLDAFAYAVKKLDTNDFFVEPEIWDLLKEANDDLKGTDAQLLPEIHEHYK YPFKVSEHGYFIYDFALPMVLLYSLYNGKSKRLADWLRKSPMKQFTTLDTHDGLGVVDAK DILSDDEIDMTTNELYKVGANVKRKYSSAEYHNLDIYQINTTYYSALGDDDKKYFISRLV QVFAPGIPQVYYVGLLAGQNDLKLLEETKEGRNINRHYYEVDEVADEVKRPVVAKLLNLL RFRNEEEAFDLEGSIDITTPSESQIQIVRENKDKTRKAVLNLDLASLEYSVEVNGKSVDF N >gi|297149550|gb|ACGQ02000001.1| GENE 662 704767 - 705717 717 316 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 314 1 316 321 183 36.0 5e-46 MSANIKDVAREAGVSIATVSRFINQNGYVAASTAKKIENAISKLNYQPKNEIRKPSTTKA IGIVFPSIKNPLFSELFTYLESNLKNKGYNCTLFIDNNENHKLEDYVSLILDGQIKGIIN SSPLKIDKVNYPGIPIVTFDRNLGPNIPFVSCNNLDGGFKIAKAVVEKGCKKILILSGNR QDYFPITDRIKGMMKVFNYHELEIKTAYTDFEGSEIAKKIQIDGLIKNKKYDAICTTDDI TALFVREQAKLINYSPIITGFDGTKFINHLFPELITVRQPTEELANLLTEICLNQIENYK ENIEKKYILPVELVNK >gi|297149550|gb|ACGQ02000001.1| GENE 663 705935 - 708121 2607 728 aa, chain + ## HITS:1 COG:BH2223 KEGG:ns NR:ns ## COG: BH2223 COG3345 # Protein_GI_number: 15614786 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Bacillus halodurans # 2 728 3 744 748 686 47.0 0 MISFDEKQKVFNLTNASISYLFSIEEGGLLGHLYYGPKIRAYHGERFYPRIDRGFSGNLP DSLDRTYSKDDLLQEYSGNNTGDFRLPSIVIKTKNGARMTDFRYQSYKIINGKPKLEGLP QSYVESDQEAQTLEVTLRDDVIKADLVLTYTIYRDRPVITRNARLINCGSEAFQVEKLAS MQLDLTKQNYDLVYLPGQYGVERQTRRKSIDQGIFEMSSRRGASSHHMNPFAAIVDKDTD EFHGNVMATLLVYSGNFKISLESDQIDQIRLLVGINDDNFSWKLNPGESFQTPEAINVYS TKGLNGMTQVFHHLLRERVARGKWRDRERPIIINNWEATEMNFDAAKLDQIVEEAKPLGI EMFVLDDGWFGHRDDDNSSLGDWYVNTKKIDLHKVAKQTHDAGMKFGLWFEPEMISKDSD LYKTHPDYVLHEPGRGMTLARNQLVLDFSRPEVVDNIFDQICKILDDVDIDYIKWDCNRN LTEVYSAAYPADQEGEIAHRHILGVYSLMEKLIERYPDILFESCSGGGGRDDAGLLYYMP QCWPSDNTDANERLRIQEGTSLVYPISSVTGHVSAVPNGHTNRITSFKMRGDVAMSATFG YELDPSALTEDEKAEVKKQVAFYKEHRKLIQFGDFYRLQSAFAGNHVAWEFVSPDKSEAL LFMYRKLSSVRYEIVNTKMYALDPDKNYQDSVTGKIYGGDELMNLGLFRNPTHKGDFISE VHYFKAVK >gi|297149550|gb|ACGQ02000001.1| GENE 664 708154 - 709557 1843 467 aa, chain + ## HITS:1 COG:STM4299 KEGG:ns NR:ns ## COG: STM4299 COG2211 # Protein_GI_number: 16767549 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 8 453 9 443 476 132 24.0 1e-30 MQKWKNTVAYGLGAFGHDSFYGILNTYLLMFITSIMFSGGDKNYTTHMVAITTMIIMVVR IIELVLDPFIGSMIDKTNSKWGKYRPWILGTGLILGLGSPFLFTTMNGLATKNGHLFLIL FTIMFFALYIVYAFKDISFWGLLPAMSLSSDDRGFTATGARIGSTIGGNIITVLYAVLLT YFSGSSNFNEHGWFMFALIIGLTQFVGAAFTAFGTKEKASVVTDQNQKEITIGQIFKTIG TNDQLGWMSLSYIIYGLGTSITNSFMLYYFRYVLDAQDKWQYVGWLGIFSGFVSIISYPF LAKYFGRRKIMIGSMLTMVLAYIIYSFTQNVAMTLVAQLFYTLAGPLVFMVLLLTIADCV EYGQLKTGHRSEAATSAVRPMLDKFNGAVTTGLTGVIAGIVGMTGNVAASSITAHDIFLF KTFAFYIPLVTTIVGMIIFMAKVKLDEKMHNEIVNKLAKDIKAEKNE >gi|297149550|gb|ACGQ02000001.1| GENE 665 709591 - 710628 1024 345 aa, chain - ## HITS:1 COG:BH2227 KEGG:ns NR:ns ## COG: BH2227 COG1609 # Protein_GI_number: 15614790 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 336 1 333 347 161 29.0 2e-39 MTSIREIARKAGVSPATVSRVLSQDKTFSIKDSTRKKVLEVANNLHYDPRPNRLLININN KKRKIIILCALSVEQLNRDLYFSNISQGLQEEANASHYTISSFIHFPKPNFDFSSVKNFD GIVIIGTFSSKFIKRVSLYNPNIVIIDEYRHFDEYDLIRNNYFELTNRVLNILYQRKYTR IGFIGGYLNEMTHTHLSKKMNIDPRTKAYETWMKLHNLPINEVITNWTLDEGYSAMDKLL NSSNPPKIVLVASDVLAMGAYRSIHLHQKEIPTDIQIISYNNSEVASYLVPSLSSISAPS YQMGQAAIRLLHDRFINHRTIPYQLLLPSKFIERESSIANKKNRI >gi|297149550|gb|ACGQ02000001.1| GENE 666 710814 - 712064 1192 416 aa, chain + ## HITS:1 COG:SP1897 KEGG:ns NR:ns ## COG: SP1897 COG1653 # Protein_GI_number: 15901724 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 3 414 2 416 419 461 53.0 1e-129 MKKWLKLVAGGIIALAFLSLTGCRKQDASSNKKVTIEFFNQKREMQATLKKMIKKFEKEH PNIRVKETDVPSAGDVLKVRMLSGDAPDVINTYPQNLDYQTWAKVGYFVDMTHKSYIKNI VNNYAEKFAINGKIYNAPLSANLYGFYYNATEFEKLGLKIPQTWSELEHLVKEIKAKGKT PFAIAGTEPWTLNGYHNLSLATVTGGFNQAENLIRYSPVNSISLNNKYIQADIQRLDLLR GNGQKNWKGASYNDAVMAFTSGKALIMPQGSWALAVIKTQNPKFKIRTFAFPGNKPGQEM TVGSGDMALSISSRSKHKKAADEFLKFMCSPEAMQMYYDQDGSPCTIKGVKQKGIDSELG GLSKYAFTKKHMVWLGQKWTTENDFFNLTGNYVLTGDKKQLISDFNTTFNPMKATN >gi|297149550|gb|ACGQ02000001.1| GENE 667 712085 - 712960 1037 291 aa, chain + ## HITS:1 COG:SP1896 KEGG:ns NR:ns ## COG: SP1896 COG1175 # Protein_GI_number: 15901723 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Streptococcus pneumoniae TIGR4 # 2 290 8 296 296 374 68.0 1e-103 MTLKKFAAKYWGWTFLIVPIILQIIFFYFPMVQGAFYSLTDWNGFTYNFNFVGLNNYRIL FMDAKFMKAIGFTLLLTVCLIVGEIAFGILIARALNAKIKGRLFWRAWFFFPAVLSGLTV SLIFKQVFNYGLPAIGNWLHLDFLTDSILGNQVGAIIAVIFVMLWQGIAMPVIIFLAGLQ SIPDEIKEAAAMDGANNTQIFWKIELPYLLPSISMVFIMALKAGFTAFDQIFALTSGGPT DATTSIGLLIYNYAFKNNQYGYANAIALVLFVVIALISILQVKLSNKYEVQ >gi|297149550|gb|ACGQ02000001.1| GENE 668 712975 - 713808 806 277 aa, chain + ## HITS:1 COG:SP1895 KEGG:ns NR:ns ## COG: SP1895 COG0395 # Protein_GI_number: 15901722 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 12 277 13 278 278 382 75.0 1e-106 MQSKREPGNFWKYVLLISGGILILVPILYSFLSSFKTTKQIMANFFAFPNPWTWANYEHL FADGIGGYFWNSIVISICSVIVVMLFVPMAAYSIARNMSKKRAFNIMYSLLILGIFVPFQ VIMIPITVLMNRIGLANMWGLIILYLTYAIPQTLFLYVGYIKLSIPESLDEAAEIDGASK WITYFKIAFPLMKPMHATTLIVNAMWFWNDFMLPLLILNKDNRMWTLPLFQYNYTGQYFN DYGPSFASYVVGIITITIVYMIFQKNIIAGMSNGAVK >gi|297149550|gb|ACGQ02000001.1| GENE 669 713830 - 714939 1579 369 aa, chain + ## HITS:1 COG:SP1580 KEGG:ns NR:ns ## COG: SP1580 COG3839 # Protein_GI_number: 15901422 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 1 368 1 375 376 513 66.0 1e-145 MVKVDLDHVYKKYDNATDYSVTDFNLHINDHEFIVFVGPSGCGKSTTLRMIAGLEEISKG TLKIGGKVMNDIAPKDRQIAMVFQNYALYPHMSVYDNMAFGLKLRHYSKEEIDKKVKSAA EVLGLAHLLDRKPAALSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAKLRVSMRAEIAK LHQELKTTTIYVTHDQTEAMTLADRIVVLKDGKIQQVGSPLEVYNKPANVFVAGFIGSPA MNFFRVILKDGKIIDKNNQDFAIPVPEGKLKILKEKGYDNKEIIFGIRPEDVHTEEVFLQ AFPETVVNATVTVSELLGSETQLYTKVGESELVSRVDARDFTKPGSMVQMGFEMNKAHFF DAETELTID >gi|297149550|gb|ACGQ02000001.1| GENE 670 715099 - 716121 658 340 aa, chain - ## HITS:1 COG:BH2227 KEGG:ns NR:ns ## COG: BH2227 COG1609 # Protein_GI_number: 15614790 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 333 1 333 347 176 34.0 4e-44 MTSIREIARKAGVSPATVSRVLNRDKTFSIKNSTRQKVLNLAKSLHYELKPNRPSNGPKR NIIVLCALSVETLNRDLYFSDIKKGLYKEADISHITVVNFIHFPDSKFRFSDLKKFDGII VIGTFTSNFLEHVAKYNTNVVIINEPRDFEKFDLIRNNYYSYTNKILDLLFERNFHKIAL IGGAVNQMDCLGLSDESCIDPRSRAYRSWMKSHDLPIQEIATDWTLEAGFNAMEKLLSTK NTPEIVIASSDLLAVGAYRAIHLHQLKIPDDIQLISFNNSEVASYLVPSLSSINAPTLEM GKAAIRLLNDRFINQRTQAWQVVLPSKFIERESSYSNLDN >gi|297149550|gb|ACGQ02000001.1| GENE 671 716557 - 722832 8052 2091 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0143 NR:ns ## KEGG: LGAS_0143 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 863 1988 1565 2687 2823 323 29.0 4e-86 MSFFNDRLCEEINEIQRFSFRKTSIGLASFAISSLIFLNWSTGYALADTSSSINSLKLNN TSKIENSDTPIISKNVEVNSAKDKLNREIDTAQKAGFNIKQDSDKVIKVNDEVDGLEKVQ ADYAEQASDIKQQIKDNQSKLNEWQDQREEQEAAFKQGHAVEATDHAYVENTFEYNSHAD SVKLYKVTKSNDGKELKEEIQLSGTNTQNKEPRNFDEPSNPNRLQYAEVDSNTHLYARWS NVVLDTATNKKYDMVVELSDAVIDKRELYGNPTKNEKGIIEIFRDPSSGLAFNYITALKL TKYLVESGTDNLYEGEDYFTQDTLNRQLPDSEQPLNKRYKAENQRAEFIKPVEGAIAAFV PKGSAMEAVEHDISNGNSGAKSLIEEVNSSLPKNKQLSESVFISKGAEVKINDESQITYP VKESMVFLTKGKASFLLGVINPINNGDPEDVYVGPDVRKHRVRADYTQVGLGILDKNDFK SVEKPTITYHRTLVKSPVSLTKTIHYIDNNGKEVKDSVSSSVTVYKTFDPTNPLDSSVIS YESTDSKIPVNSTGKVILPGAEVPLIKGAYAKIVPSEANNDSEVSVKNPTREYNIVYNSF GKIIPVDESGKEIQGADTPTYNNNSDDPTKAGDTTTPTVPGYTATKTTVSGSDITNPGDN TKVIYTANNKTTNIVFKDQDNNNKVVNTVPVDGYTSETVPVDGTKTTIPDGYELVPGNQV PTTITFAGGDSTTPDIVVYLKHKHTITTKNINKKITYQTTDGNTVADSYKTSITIAQDVD EATNTATYKVNGEITTKADLTSQDVPAAPTGYHLDTNQSTGDYNKSTSYDLTNQFNTLTD GQTVNAKVVYAPDKQTITVTVHDSETNTDVTIPTIIPTNFDGTTSGTVDITDGINKIKIY LTTHGYTVPDTVEVPKNFDNTDNGDSNTDKTPQPVTITVGHKTTEVKPDSPKTTDDNLPD NPDKKYPSGVTATDLNKTITRTILEVDPVTKESKTVATQTVHYTRTATVDEVTGKVAYTN WATTDKWASYTAPDKPGYTPSQKSVDETTPSVTDKDQTVTITYSANPTNTNVVFVDDNDN GKTVKTVTVDGTTGGTTPLSSDDQKIPAGYELVPGNTIPTEIKFNNDGSQTPNTTIHLKH KTITVNSDSPKTTDDNLPDNPDKKYPSGVTATDLNKTITRTIVEVDPVTGEKKTVATQSV HYTRTATVDEVNGKVTYSDWTTTDKWASYTAPDKPGYTPSQTSVEEATPAVTDKDTTVTI TYTGNPTNTKVIFVDDNDNGKTIKTVPVNGVTGGTTPLSSDDQKIPDGYELVDGNKVPTE IKFNNDGSQTPDTTIHLKHKTVDVTPDSPAQPGDKLPDNPNKYYPDGVDTTKVVTRTINV HKPDGTTETITQTVTFTRTVTVDEVTGKVISSTPWTSTNPDYPEYTVPSIDGYTPSQSTV KKVTPKDTDSNSTVDVTYTGNTQTIKVVAVDKTTGKEVTVDVPTTFNGKSDENVGSDVTD GVEKIKNYLKNQGYTVPETIEIPTNFDHSQSADSTKDDQPQVINITVDHTHSSSTEDKTV TRTIIVKNPNGTENTTKQTVIFTRTVTTDNVTGDKTYSSWTTDGTSDWNEFTTPTVAGYT PSQSIVEKVTPSADDSNQTITIDYSADKQVLKLRAYDVNIGSAVEIELPSSLTTEVDGAS NGTVDVDNVNTLSEAIKSYLASKGYSFVSSTEAPTKLDTDDSATQYVDLTFNHAITPATE DKTVTRTIIVKNPDGTENTTKQEVTFTRTVTTDNVKGDKTYGSWTTDGTSDWNKFTTLTV AGYTPSQSTVEKVTPSADDSDQTVTIDYSADKQTIVINYVDKDSNNKLLTSVTLTGFTGD KVEYSTAETIKNFENAGYELVSDNFSNNAYYLAKMQIFTVVLKHDPILKVETKQFTYTVH YVSTDGVSVPEDNVQVSTWKRTISKDLVTGIETPITSWTSNINKYKEVITPEIARHYADT LMVDSKNVLQKNIVVTVTYKPEIVLNNDGEFSKSKISNKLEKENEQRKINNLMSNKPISH AQSLNLSQKSLINYDKNLPQTGNHEKLVQILGIGLVTTSLLFKLLGNKKEN >gi|297149550|gb|ACGQ02000001.1| GENE 672 723190 - 723807 620 205 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852184|ref|ZP_05557570.1| ## NR: gi|256852184|ref|ZP_05557570.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 205 1 205 205 389 100.0 1e-107 MKSLTLFLDDVFVKIIEDDTFSISFHNCQPEDFEITPGENTTIKQIHSSQGLFIKKKYFS LSFKSKDEVTSIIELKLPSLEHLNGICDVGGISLRNLTVNTIDIQVDSGLVYLNNIHAEK VSITCDTGTVNADKLIVSDHCDINVDSGTLFIKNSLTSLCGYDIKCETGISKLFGSVKIR GDKRLFKAGVPMYRLRNDTGLCTIE >gi|297149550|gb|ACGQ02000001.1| GENE 673 724121 - 724651 455 176 aa, chain + ## HITS:1 COG:MA1614 KEGG:ns NR:ns ## COG: MA1614 COG2110 # Protein_GI_number: 20090472 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Methanosarcina acetivorans str.C2A # 7 162 26 181 195 158 51.0 6e-39 MKEIELSKNIFVVKASVVNFPADAIVNAANKTLLGGGGVDGAIHQAAGPNLLEACKKLNG CDTGEAKITPSFDLKTCKYIIHTVGPVFKLSQNPQQQLQSCYKKSLDLALEYKCNSVAFS GISTGVYEYPVKQAASVASEAVAEWLKRHNFAIKVFLCCYKESEFEAYAQLVRTTK >gi|297149550|gb|ACGQ02000001.1| GENE 674 724806 - 725366 151 186 aa, chain - ## HITS:1 COG:no KEGG:lhv_1083 NR:ns ## KEGG: lhv_1083 # Name: not_defined # Def: putative transposase # Organism: L.helveticus # Pathway: not_defined # 1 186 100 285 285 368 96.0 1e-101 MNKKVDLNGHFLIIDSFPVPVCQPIRNYRAKIFRGYANIGYKATKKIYFYGFKVHAIVSD DGYILDYVVTKASVHDAKETVELLENAHPSNYYLLGDEGYLGKELHQQLKQMGYELWTPY RKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAY CLERFN >gi|297149550|gb|ACGQ02000001.1| GENE 675 725836 - 727329 1566 497 aa, chain + ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 8 496 6 491 492 453 51.0 1e-127 MDNKKDLDKSFFGQPRGLATLFYTVMWERFSYYGMRAILIFYMYYALEKGGLGMSQTLAA SIMSIYGSLVYISTIAGGWLADRVWGPRRTTFIGGVLIMLGHICLSMPFGAAALYLSIAF IVMGSGLLNPASSAMVGDLYEENDNRRDAGFSLFVFGINLGAVIAPIAVPWAASGFGLHL FGDETNFHAGFSLAAIGMFFGLVQYWFDGKKYLNEKDFKPNDPLNESEKQKLIKQVLLGL LSLVLVLAIMFFMGSLNIDGIINLITVIAIAMPVIYFVMMLRSDKVTKVEKHRVLAYIPL FIAAAIFWGIEESGSTVLALFAADRTILHLGAWHFEAANFQVLNPLFIMILTPVFVALWN NWKKQPSAPGKFSGALIFAGLSYVWMAIPAFISPDHRVSPLWLVGSWFLVEIGEMLNSPI GLSVTTKLAPKAFKSQMMSLWYMADSVGQAVTAQTVKLYTPKTEVQYFLAVGVVSIVFGI ILMFLVKRIHSLMEGID >gi|297149550|gb|ACGQ02000001.1| GENE 676 727381 - 728271 1155 296 aa, chain - ## HITS:1 COG:DRA0143 KEGG:ns NR:ns ## COG: DRA0143 COG1250 # Protein_GI_number: 15807812 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Deinococcus radiodurans # 3 290 55 346 347 250 46.0 2e-66 MFKNITIAGAGTLGSQIAFQTALCDFNVRIWNPHPERAKRRLAALRPFYKKDMGLTDEQF DKAMANILSITNDWEIPFKDCDYLIESVPESLNVKADFYHNVCPHLPEKTIIASNSSTMV PSQLVNYVDRPDKFLHMHFANHIWTNNTAEIVGTDRTKPEVIEDVIEFAKAIKMLPIHMK KEQHGYIMNALSVPFLNAALELWANGVADPITINKDWMNSTGCPFGPFMSMDMVGIRTVY AICAQQARTPEELKVAKTMKDMIDAGHYGIEAGEGFYKYPNPAFERADFLTSIEAR >gi|297149550|gb|ACGQ02000001.1| GENE 677 728281 - 729108 1039 275 aa, chain - ## HITS:1 COG:no KEGG:LSL_0135 NR:ns ## KEGG: LSL_0135 # Name: not_defined # Def: acetoacetate decarboxylase (EC:4.1.1.4) # Organism: L.salivarius # Pathway: Synthesis and degradation of ketone bodies [PATH:lsl00072]; Propanoate metabolism [PATH:lsl00640]; Metabolic pathways [PATH:lsl01100] # 1 275 1 275 277 319 54.0 8e-86 MTSYLVNKEDLVNFLDNPNMKNQDGYMFAYVTSPEVLARLVPAPLKPVAPVIAGYITHMG NPTFAKPYDEAVLYSLVSYGGRMVGAYPFTLFLSGDGAEEAMLAGREGAAIPKKLADKIS YTEANGCTHVVVTRHGVDLINLTFTPGIPNNPDIAKQLMGSQSALDTPTDTYSFFFDYKI DQDHDGHNHFINTRLIATKTTGTTHAFTPGNITMELGTSSDDPVSELTILKPIGGAHYQM TSGKMHETIQLTQVDSNEIAPYLITGRYDQAILGK >gi|297149550|gb|ACGQ02000001.1| GENE 678 729308 - 729958 723 216 aa, chain + ## HITS:1 COG:BH3859 KEGG:ns NR:ns ## COG: BH3859 COG0778 # Protein_GI_number: 15616421 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus halodurans # 4 203 3 201 212 150 39.0 2e-36 MIETEFKNDVFSNVMLKRHSVRHFDRSCKIDRSVLTEIVKEATTAPSSCNLQAWHFVVVD TDQGKEKLRKIFMPFNYPQLDTCSAMVVLFGDTDAFKKYRDLWQGMYEEKKITKERLDTI LGTFLPIYEKADRTLLTADAMVDASLAAMQFMLDARARGFATNPIAGYDATKMALAMGLD PVRYVPVMAIAIGKPDESQKELVSTRYDVGDVLEFR >gi|297149550|gb|ACGQ02000001.1| GENE 679 730099 - 730767 726 222 aa, chain + ## HITS:1 COG:lin0511 KEGG:ns NR:ns ## COG: lin0511 COG0518 # Protein_GI_number: 16799586 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Listeria innocua # 1 220 1 220 226 166 37.0 4e-41 MRVNILQHTPNEGPGAIADWCRDRGYEMYVYHPYQFGKLPEASETDMLVILGGPMSPNDD LVWIKEERVLITKLLASDTPMLGACYGAQQIAKVLGSKIGKAPHKEVGWAPVYLQNHVIA GLPEKMLAMHWHEEMFEVPRGAHLLYSSDLVKNQGFVFGSHVIGLQFHFEPLADNVREMV VNDGEYALHNNALKQSPEQILQRQVPSENKQIMYKLLDFITK >gi|297149550|gb|ACGQ02000001.1| GENE 680 730842 - 731822 1003 326 aa, chain + ## HITS:1 COG:L109882 KEGG:ns NR:ns ## COG: L109882 COG0673 # Protein_GI_number: 15673643 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Lactococcus lactis # 1 326 1 324 326 226 40.0 5e-59 MLKLGIIGTSWISKQLVEAAQATKKWTVTSVYSRSLERAKEFGEPLVIDEFFDDLEDFFA NGDFEVVYIASPNSLHFKQAKMAIEHDKNVIVEKPAFTNPKQYDEIAKLLDTHDCHFIEA ARHIHTKIFQKLMNEVEKLPKVDGAYLNVRQYSSRMHTLAPGQKRANIFKPEFAGGALMD IGVYGVYVAIALFGMPNSCMYSPVLYKNEIDLSGIAILDYHGFGVTIDIAKNTTTYQGSE ICGDKEVVGIDSILNMHKVDYYDADGKKHASRIKVPDNPLYEEMNEFADLFADSDEKLFD YWVLSAQVGEVLYNLRQMAGIKFLGD >gi|297149550|gb|ACGQ02000001.1| GENE 681 731944 - 736131 4600 1395 aa, chain + ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 1394 3 1334 1334 508 31.0 1e-143 MKEIKDYIIGLDIGTNSCGYVVTDKQNNILKLKGKTAIGARLFKEGQAAADRRSFRTTRR RLARRHWRLGLLEEIFDPEMEKIDPNFFRRLKESDYSPKDSRKQFNAIVFKSIKADKRFY KKYPTIYHLRNALMHDNQKHDLREIFMAVHHIVKYRGNFLREDSVNAFKAAKFSLRGEDG IGPVDKLNDLLKEIYSEYSPELATNNLSKIEDIIKDKNLYKQDKLKQVATLLIKEADSKD KAKLNKDIAKQVANSFMGYMFRLDTLFSLTDVDVKDYKLKFSDANIDESLDDLTSLLTDA QIEFVLELQSIYNTIVLNEIVPDGMSLSESMIKKYDDHKEDLKIFKEYIDSLSDQKKAKK LLSAYNLYVNYRKSDLVEAKNLFKNKKVGDKNFADVISNFEVFGKFVSDNLDDSELANKI KARLDLGEFLPKQRTNQNGVIPYQLHQVELTQILEKQGKYYPFLITPNPVESHRNNAPYE ISELVSFRVPYYVGPLIDNQSIKDKQNKNKFAWMVRQKQGQITPWNLEEMVDTTESANQF IKRMTRKDTYLLAEDVLPKSSLVYQKFMILDELNRIKIDGKKLTSELKHDIFEKLFKKQK SINLDNLKNYLLVEGNIPGLIEGLSDGINFNNSFSTYIDYRNIFGDEIDNPNKQADFEKM IEWSTVFEDRKIFKRKLKEITWLTSEQIKQVSSKRYSGWGRLSKKLLTQITDENGVNILQ RLWNEPETLTEVLANPVIKRKIVEANSSFTKAKDMKDILVEAYTSPQNKKAIRQVMRVVD DIIAAAHGKKPSQIAIEFAREDQDNPQMTKSRKAQLDQIYAKISDEFLDDAVKNELKNMK DNKPLAKDKVFLYFKQMGRDAYSGEKLSLDNLQDYDIDHIYPQSFIKDDSFDNRVLVQRA YNNGKSDNVPVLLFGNKIAAGLGITIRQMWKKWLELGLISKRKFNNLITDPEKISRNMAS GFVNRQLVETSQVIKLVANILQAKLPDTEIIEVKASYNSILRKEFNLYKSREVNDYHHAI DAYLTTIVGNYLYQVYPKLRPYFVYGQFKKFGKAENQEDDPVKKIKKFNFIYQLIWGKDD AICISHTNQQVFSKKDIIDKLTTAYNFKYMNISHAVYTRNNNMFKQTLFPIIERTTAKTK SLIPKKLDRPTDIYGGYSNNNDAYLALVKVDKKRGSEYRVVGIPMRAAAMLKASKNYDED LRKVIEPMVMFDKNGKAKRGIEGFRVLVGKMPFKQAVLDGNKKFMLTGTVDTPNLKQLVL SQQNMKYILDYIEDVDCRKHKFGDKVQNPDKCLLEVFDEIIEIVDKYFELFDSRDFREKL RNSRNKFIKLEASKKADTILAILKGLQAKSTRATIKELNISDFGRIITSSISPEAQLIYQ SPTGLFERRVKVKDL >gi|297149550|gb|ACGQ02000001.1| GENE 682 736361 - 737269 652 302 aa, chain + ## HITS:1 COG:SPy1047 KEGG:ns NR:ns ## COG: SPy1047 COG1518 # Protein_GI_number: 15675042 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 3 279 4 280 289 172 36.0 6e-43 MSWRNVIITQHAKLSYSANMMQVQTSNGITQIPLSDIALVLVESTQVVITSQLISKLAER GCKVIFVDNKYNPITETVNYYAPKCNYQKLLAQLNWDNSLKEKLWTKIVWLKMNNQLRVL KNYKLEFTKVEEEINKLEFNDVSNREAVVAREYFQELFGKSFVRQDEGDTINAALNYGYS ILLSSFNRRIVQNGYETYLGVHHSSIANQFNLASDLMEPFRPFVDYWVAGQKLKDFTPDV RYGLVELLSLQIKYNGKAILLANAIDLFTKECLGYLSSDVDKVESVMDFVNEVPNHAIVD NV >gi|297149550|gb|ACGQ02000001.1| GENE 683 737247 - 737552 241 101 aa, chain + ## HITS:1 COG:SPy1048 KEGG:ns NR:ns ## COG: SPy1048 COG3512 # Protein_GI_number: 15675043 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 101 6 106 113 82 41.0 2e-16 MRLLIMFDLPTETAQDRKNYRIFRKELINEGFVMIQFSVYVRVCVNRKMANFLENRIRNF LPEEGLVQSLMLTEKQYNDMHFLIGTAVDDVRNTSDRTVII >gi|297149550|gb|ACGQ02000001.1| GENE 684 737549 - 738217 601 222 aa, chain + ## HITS:1 COG:no KEGG:LSL_0100 NR:ns ## KEGG: LSL_0100 # Name: not_defined # Def: CRISPR-associated Csn2 family protein # Organism: L.salivarius # Pathway: not_defined # 1 222 1 223 223 129 31.0 5e-29 MIISYEGHHPIKVSDGKVTFIKVANSAVYRDFILSFQGKSDKVKFFDEHYNQLEKNKFID WVGDVLITQDCLNSYLTKIISNLFENISEKHRNRIFDKWRQLSTDIQDIIFMTDLPIEVN ENVDLKKLFKFDGIHFDDSVLSDPYAIIETVVKIHIECKLNSVVTFANVSHYLTKEQLNN LITFVKEVNVPLILMEFSSPNFKVVSGDSRVCYIDEDFVDWY >gi|297149550|gb|ACGQ02000001.1| GENE 685 739348 - 741732 2731 794 aa, chain + ## HITS:1 COG:PAE2423 KEGG:ns NR:ns ## COG: PAE2423 COG0574 # Protein_GI_number: 18313335 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Pyrobaculum aerophilum # 9 777 4 778 811 728 49.0 0 MDQRKNANVLWFDELKREDVDLVGGKSSSLGELTSGTNVPVPYGFATTASAYRYFMKVTG LNEKIDALLKTLKNVDDSDELHKICSQIRKLIVAAKMPVDLAKEIGDNYDKLAMKMKVNE PFVAVRSSATAEDLPDASFAGQQDTYLNVHGRDNVIQKVKECYASTFTDRATYYRVKQGF PHEKVALSAAVQMMAFSKASGVMFTVNVATGDDSKVMIEGSWGLGEYIVQGTVTPDNFVV DKASGKISDKTINNKNVELIRLRDGGVEDRKVPEDIATKPCLTDEQVEQLASYAKEIEKH YGCYMDMEWSLDEDDKLWLVQARPETVWSQRKKAGKMSKDTSDENLTTDHKVLVSGLPAS PGIKHGIVHVIENPEDIDKFKDGEVLVTLMTSPDWVPAMKKASAIVTNNGGMTCHAAIVS REMQIPCIVGTASRGAKATAVLKDGQEVTVDAKNGVVYQGVVADMVKKPKQGVATPVAEY FAPTATGVMMNLGDPDLVDRYKDLPCDGIGLMREEFLWTTYIHQHPLYLIETGHPERVVN ELANGISKVARAMNPKPVVLRFSDFKSGEYRNLKGGDKFEPHESADLLGWRGASRYYDPK YIEAFKLELEAVKKVRNEYGLTNLNVMIPFVRTVDELKKVIEIMAEAGLKRSNDFKIYMM AEIPSNIILADQFNQYIDGYSIGSNDLTMLLLGCDRNNDTVSSLFDERNLAIKRAIRHLI KTAHKDGKTVSICGQAPSEYPEFTEFLVKSGIDYVSVNPDMVKATKRNVARYEQRIILDH ATGLGRADVEDYEW >gi|297149550|gb|ACGQ02000001.1| GENE 686 741825 - 742235 244 136 aa, chain + ## HITS:1 COG:SP1549 KEGG:ns NR:ns ## COG: SP1549 COG0242 # Protein_GI_number: 15901392 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 136 1 136 136 168 56.0 3e-42 MIKEIIKDEMFLKRKSLPATKADLSIGRDLRDTLQANKERCVGMAANMIGYSKRVIIVNI GFFDVVMFNPVILERKNPYQVSEGCLSLSGSRNTLRFKEVKVAFFDEKWENQELTLTGFA AEICQHEMDHLEGILI >gi|297149550|gb|ACGQ02000001.1| GENE 687 742317 - 744002 1052 561 aa, chain + ## HITS:1 COG:no KEGG:LAR_0278 NR:ns ## KEGG: LAR_0278 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 6 546 9 558 589 319 34.0 2e-85 MNKERIKVIIPYFIILVASLGTLLPQIAFHATILGSDTVFHWSRFYDIKMQLANGSFNWF QMNYTFQQTGQIVNAFYGPLFAWLNGVLLFITNNWFQYQIVSGLILLLISGIGIYRMCLK VNCPSYLGVILAILYNNVGMIPVWLIGSNFSAWGAALMPYLCIQIVNLLEEKKNPYHWQV VTLIFAIVANIHLLSFILLALAFCPFLFLSFIRTTNKGLFILGLVKSALWGIGLTGTIWG CFLLVYRTNKISSPGTFDLAGATIHLSPKGVALKDFLIAVAILFLLQILLAIITFKLNIN NFYITFVGTLFLLLATNWLINWSTVQKIFPGLGSSFQFPFRFTIVFYALFMLGLAYSSQL LFKNTKYGKWIYTISIALVTIFAYQETFSWVQRTSSQTNSVMIYSPKSKVFNEQQVEAFG NKPGQLFRYYLNIKPDYLPVTNKKLNPNDVRDLYEKFIKDDYIKYQHRVLKNGSLELKWN SSKKEKITLPLIMYQQSELIVNGKRLTHLQKTEIGNPVVQSKIGVNNAILSFRVPLWFNL LIVVNFASWILFIATFCFKRK >gi|297149550|gb|ACGQ02000001.1| GENE 688 744040 - 744684 714 214 aa, chain - ## HITS:1 COG:no KEGG:LGG_01093 NR:ns ## KEGG: LGG_01093 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 3 214 11 233 233 109 36.0 5e-23 MKKEENKKKPSYKRIWFWLVVLILVGAASSTFGKNTSNSTSSSNASSSSKSSSNGNLVSL TNFNKINLSSSNGDSKETIRKLFGKKEASTSSSTVENIKTELLTWDSVDNGSFASNITIN FDNDHAVVKSISGLKVNRSKKLSLSDFEAISDGQSQDDVKKKLGEPNGYTITDLAGYKSE VWEYTSGIKGSVGANFNITFTDGKVSGKSQYEMK >gi|297149550|gb|ACGQ02000001.1| GENE 689 745000 - 745845 342 281 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 [Vibrio cholerae MZO-2] # 1 253 221 465 490 136 36 2e-30 MIEISDKVVRSTIFKRPSNSYKGMYGRVLLIGGNLNFGGAIIMSAEATVNSGAGLTSVAT DINNLCSLHSRIPEVMFIDWRDTKLVEAIENSDVIAIGPGLGLDAQAKLLLKLVKNTVKS TQTVILDASALDLLAEDYTLLPVNAKKIVLTPHQKEWERVSQIKIPFQEDGDNFAVLKSL FPDNNGILVLKSNHTKIYDCFGKVYQNPLGNPGMATGGMGDTLTGILAGFCGQFSAKIET VASAVYLHSLAGDELFKKRYVVLPTQLSAKIPQLMKQFSLE >gi|297149550|gb|ACGQ02000001.1| GENE 690 745857 - 747125 1039 422 aa, chain + ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 15 414 9 418 443 239 38.0 1e-62 MKRFFKAIICLLSFLLVSSLALTAGTVSASTSINNINADEVNLDVKAAITIDKKTGEVLY AKNAAQALPIASMSKLITIYLTLQAIKDGKLSWNQKLTPTKNIVKLSNNSDYSNVPLQEK HQYTVKQLYEASLIESANGAVMMLAQAVYGSQENAVNQMRTLLKKWNITDAQIYTTCGLK NGEVGSDAYPGAGKNVENEIPAVGVAKIVDHLLTDYPEILNTSKLAELDFKDGSTVTKMQ NWNWMLKGLSQYDSAYPLDGLKTGTSEKAGACFAGTLKYKGRRLITIVMGAKHADGTDPS RFTQTKKMLDYVYNNYQLYIYKKGTQLTNLKGIKVNDGNQKIANLVVKKDTGIWQKTSST GKLAFSKSAIEAPIKKGQLAGYYLFTNNPSIYSSKGTKLAATVRENIDQANIFVRIWHFF FK >gi|297149550|gb|ACGQ02000001.1| GENE 691 747201 - 749297 2468 698 aa, chain + ## HITS:1 COG:lin0018_2 KEGG:ns NR:ns ## COG: lin0018_2 COG4990 # Protein_GI_number: 16799097 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 539 698 4 164 164 140 46.0 7e-33 MKKFGISSAFLLALTPLFFSAQSVKAAESSENIESAKINESVKVQPIREVIKIKYNGLGG VAVWKSYSYASGLTGSYLGNNTRWQAFAIATNTDGTKWYNLGGNQWVKSDYVISDSNLGT VKSETNQPVTSLKPENAKIENQTGVVKIKYDGLGGVAVWKSYDTNQGLTGQYLPKDSSWQ YFKVATTNNGTKWYNLGGNQWVKSDYAIEKSHSNVDVIEKSTQQQPVVIPQTLKNQTGVV KIKYDGLGGVAVWKSYNTSQGLTGHYLPKDSSWQYFKIAVMKDGTKWYNLGGNQWVKSDY VVDKSQPNGETTKKQEAGQSTVAPANLENRNGVIRINYNGLGGVAVWKSYDTNQGITGHY LSKGSSWQYFKVATMKDGTKWYNLGGNQWVKSDYAIDLSVPKKENVTPVQKSNDGMNVQD QTGVLSINYSGLGGVAVWKNYDTMQGLTGSYLRNGSSWQYFKVAVAANGAKWYNLGGNQW VMGQYVSLKYENPTGLNGNIVKDGNRYIFKNNTGEVLTGTIINGKQTFITDPYGGIYYVQ NDAPVISQLPELPTGCEMTAVTMMLQYAGANVSKLQVANETPRSSNGNYGFVGSPYSSTG WWVFPTGIAPVVNKHLGTSQVMTGASIDAIKDKLIHGHLVVVWVANMNGFINHALTLTGY NNNGTLYYNNPWTGKKESMSVNEFMGKWTLDQKRALSY >gi|297149550|gb|ACGQ02000001.1| GENE 692 749557 - 751233 2188 558 aa, chain + ## HITS:1 COG:L0344 KEGG:ns NR:ns ## COG: L0344 COG0018 # Protein_GI_number: 15674020 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Lactococcus lactis # 1 558 1 564 564 633 57.0 0 MDFKQKVVELISSQVELPKEKINSLIERPKNPEMGDYAFPAFILAKTLHKNPAEIAKAIV ANLSDDNFEKIQAVGPYVNFSIKKSALISQTLEEVLVKKNNYGNQNLGSGNVAIDMSSPN IAKPMSMGHLRSTVIGNSIAKILTKVGYTPIKINHLGDYGTQFGKLITAYKLWGNEEDVK KDPINSLFHYYVKFHEVAEEKPELEDEGRAWFKKLEGGDSEAVKLWNWFRKVSLQEFNRI YKKLNVEFDSYHGEAFYNDKMDAIVDELRQKDLLVESRGAQVVDLGPDKNPAMILKSDGT SIYTTRDLTAAEYRKKHYDFVQALYVVGNEQSAYFEQLKEVLKKMGHEWADDIHHIPFGL ITQGGKKLSTRKGNVVFLDKVLEDAVELAMKQIETKNPSLPNKEQVANEVGIGAVVFHDL KNDRLDAFDFNLEEVVRFEGETGPYVQYTNARAQSILRKANQIVTIDELDLSDEWAFAVA KDLADFPAVLAKASEKYEPSIIAKFALKLAKHFNKYYANVRILDEDDQLAARLALVKATS IVLTESLHLLGVAAPKEM >gi|297149550|gb|ACGQ02000001.1| GENE 693 751303 - 752214 1233 303 aa, chain + ## HITS:1 COG:SPy1889 KEGG:ns NR:ns ## COG: SPy1889 COG0191 # Protein_GI_number: 15675705 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pyogenes M1 GAS # 6 283 5 289 293 307 53.0 1e-83 MAYFDNGNEIFKEARKHHYAVGAYNTNNLEWTRAELRAAEETRTPLLIQVSTGAAKYMGG YKFVKDMVADQMDAMNISVPVILNLDHGDFESAKECIKLGYSSVMFDGHALPTEENLAKT KEIVKLAHERGISVEAEIGKIGENQGGGELASVEDAKAFVAAGVDKLACGIGNIHGVYPA DWKGLNFDRLKEIAEAVPDTPLVLHGGSGIPQDQIEKAIQLGIAKININTEFQLAFQEAT RDYIMSEKDLDKDHKGYDPRKLLLPGTEAITAKMKEMISWMGTKTIDDELKDASFDRSSL NEE >gi|297149550|gb|ACGQ02000001.1| GENE 694 752242 - 753105 1277 287 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 1 287 1 287 287 496 83 1e-139 MSTYRFTNKYPNNEPVSVNDLLRQLLIPRKWRHFLRIEKKILINGNYRNFNELVFPNDEY SIMLTHVENQQHSITPSGHLPTIIYEDKNILVINKPSNQKTHPNLFETDTAMNDVTTYLG YTPYIIHRLDMLTNGLLLFAKNPAVVPILNRQLTTKIMKRNYYATVKLKNIPNQGTIDLP IAQDPNDQRKRIVDDNGLKAITHYQVIARNSIQNTMTLKLTLETGRTHQIRVHLASINLP IIGDPLYNPDFNGEALALTAYELSLISPFTFDTLKVTLPNKKDYPNG >gi|297149550|gb|ACGQ02000001.1| GENE 695 753190 - 755247 2236 685 aa, chain + ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 32 685 48 700 714 572 48.0 1e-162 MREYSRNKKANPVWLFIKNFNHRFQVIRWLILVFLTVILITSSYYTIKVKTSNIANLKAS LATTTQIYDASGQKAGNLYSQKGTFVELDKISPYMQNAVISTEDRTFYTNPGFSIKGMAR AFISLLIHHGNIAGGGSTLTQQLAKNAILTQQQTFSRKLEELFFAIEINHVYSKKDILTM YLNNAYFGNGVWGVQDASHKYFGKDASDLTVGEAATLAGMLRNPSYYNPIDHMSNALSRR NVVLSLMVQNKKLSATSAKTAQSEGLSLKDNYIQDDGYKYPYFFDAVVDEAISKYGLTEE DVMNKGLKIYTTLNTDYQSAMQDSFDSSANFPSSASDGTKVQGASVAIDPKTEAVKAIVG GRGDHVFRGYNRATQMRRQPGSSIKPLAVYTPALQSGYHYDSELSDKLQTFGANKYEPHN VDNQYSTSIPMYQAIAQSKNVAAVWLLDKIGVSKGVQAMQNFGIKVAKKDQNLALALGGL STGVSPLQMARAYSAFANKGNLPNNAYFITKIEDASGNVIAQNSNIGNHRIMSQSVAKEM TSMLLGVFTSGTAQSAQPAGYEVAGKTGSTEVSWAYGTKDQWIVGYTPDVVVATWVGFDK TDQNHYMQGISETGITRLYKAEMEGILPYTKGTAFSEKPAQSMANATGSNSDWLSQAGQN LQNGLNQAGKNIQEWYNNIKGLFGR >gi|297149550|gb|ACGQ02000001.1| GENE 696 755259 - 755621 617 120 aa, chain + ## HITS:1 COG:lin2326 KEGG:ns NR:ns ## COG: lin2326 COG3679 # Protein_GI_number: 16801390 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 2 111 3 112 117 57 32.0 8e-09 MINIYDTANKLASEFQETDQFTNLKKAIAGVKENETSLAIYREMEEFQKGILEKQQNGQE MTDEEKARYQELNQKIQNDPHVKQVIMAEQGIYMLLDDIQKTIAKPITDLYEDISIHSGK >gi|297149550|gb|ACGQ02000001.1| GENE 697 755624 - 756847 1017 407 aa, chain + ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 285 4 274 411 187 37.0 3e-47 MKFIHLADAHLDSPFRGLSFLPYKTYEEIKSAAEKSFQRICDLALAQEVDLVLIAGDTFD SNKPSPKSQLFFAEQVKRLTDAEIEVVMIFGNHDYMDLNSLFVNASPYFHLLGNGQKVEK ISLKTKQGFEYNVVGFSYQNNHITENMVSKFPVKDSNYTIGLMHAGVKTTEAYQNVYAPF EVAELRNLDYDYFALGHIHARQVLSQKPLIIYPGNIQGRHINELSEKGCYLAIVDEERKE TKISFEKTAPILWKKLELTLTEQLSKAELQNWLISELNKANKELTFFYVVINKAQFLSEA QIELITDSDFWNNLSQNLAFSSQVIDLRLKSNLQIKLGAKEQKAFSEAKLESTNKEAFLK LAQDLIKKDQYLAKLCQREDFQQETVERALVILAQSMKGIDDETNEN >gi|297149550|gb|ACGQ02000001.1| GENE 698 756828 - 759242 1971 804 aa, chain + ## HITS:1 COG:MA2362 KEGG:ns NR:ns ## COG: MA2362 COG4717 # Protein_GI_number: 20091195 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 496 786 981 1276 1300 94 26.0 1e-18 MKLTKIKIIHFGKLSNLTFSLPSKEINVFFGQNEAGKSTTVAFIKQILFGFYLRSSKSPF FEEYEPLAAVSPMGGSLFFELDGSEFELERLWAKGDKSKKGTLTVKKDGHIVPESLFFDQ IQNIDGSFYADSFIFNQDTLAQIMKLTENDLVEQIYYLGAAKSTEFLNLRDKFDKEAGTL FKKLGKKPEVNQLLAKRIDELDDLSQKQAEFANYKVLENDLNKQRSEYIKSQNEYKTNNE KLIAAKELEQKLVSYKKYQVLKNSLTEVKFSEADFNSCQNLVVEKKNLLANLEEDNSQLK NLQADDFDQEQAEKLLLERNSFVDWQNQLEYKKYELDKRKKQREQLISLYPFLRNLEEVD INQLQISAKKISSPTNTTKSKIMPWIVGLAVVGTISLIINPILALFLFILTGYLGFKESK RKAVAKQREARLASFVKEYGFNPNNQELNLVIEKLNKLKEIELDISNFTIDVEKLQSKLQ NYIVNLGKYLKRPLALEEVNEALNSLELTVRQRSILAANKASLVTNIETLKKKIETISKQ INDLLLKAEVKSWDEYLKLREAYFANKEQENRLNALSENFKDSHEKLHEIMLDEEKWQQK KDALKKQNHQLELYLAKLNQNAAEIKVKMENFANSDEIERQKQELETTNTQLNTATSKYL AYILASRIITRALDIASGERLPKMLVASQEYFTLLTNGNYQAINFGKTIKVTNRTGKKIE IKYLSRATKEQLYFALKLAFAKQIQDDINLPILIDDSFVNFDHGRTENIIKLLEQLAQES QIIIFTARKSLANALTKHVLTFEG >gi|297149550|gb|ACGQ02000001.1| GENE 699 759252 - 760226 970 324 aa, chain + ## HITS:1 COG:SP1980 KEGG:ns NR:ns ## COG: SP1980 COG3481 # Protein_GI_number: 15901803 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 12 318 5 308 308 279 46.0 6e-75 MLKNLMDYNLGEEFDQVLLIKHAQLFHTKKGTTYLMLELADKSGSMRANLWDADEEDLAK YPTGDLVAVNGVIDEYQNRPQIKIFSIRPINNDNGYDLSSFVKKAPEASASMKEEINDYV FKILNPTWNRIVRYLLEKWSNKFYAFPAAKSNHHATQAGLAYHTLSMLRDAEAISKNYPQ VNQSLLFAGCILHDLGKVIEFTGPVATRYTTAGNLLGHLVIGDEEIVLAANELKIDKESE DVVLLRHMVISHHGLPEYGAAKRPALLEAELLHRIDDLDASIYEITKALQETKPGEFTNP IFAQSGRKFYRPKNSDLDKIDKLN >gi|297149550|gb|ACGQ02000001.1| GENE 700 760283 - 761191 1175 302 aa, chain - ## HITS:1 COG:lin2322 KEGG:ns NR:ns ## COG: lin2322 COG0760 # Protein_GI_number: 16801386 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 19 299 16 290 291 138 35.0 1e-32 MNKYWKKAAAIVAVAGIALSATACSSSATLVSYKGGKITQDEYYKELKSSQAGKSTLANM IIYRALKQQYGKKVSQKQVDKEYNAYKKQYGSSFESALEQNGYTTSSFKKNIETNLLTVA ALKDIKKITSKQEQKAWKSYQPKVTVQHILVSKKSTAEDIIKQLKSGTSFATLAKKYSTD SATKDKGGKLAAFDSTDTTLDSDFKTAAFKLKTGEYTTTPVKTQSGYEIIKMIKHPSKGK FSDHKKEIDEQIYQSMEQDTATMQSVIRTVLKKSDISIKDKDLSNVLSSYMSTTTSSTTS SN >gi|297149550|gb|ACGQ02000001.1| GENE 701 761388 - 761741 439 117 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256852156|ref|ZP_05557542.1| ## NR: gi|256852156|ref|ZP_05557542.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 117 1 117 117 190 100.0 2e-47 MFKSFGLGFILGAGVGLVAAFLPTDDEKRCLKDDVKDYVDGTVNDSTTFSNNLTTFQDNL NNFSQQTPIATETLSSLQNRTEKFQNIVNKKTDELKDKISNLNEKLISLNADLKERN >gi|297149550|gb|ACGQ02000001.1| GENE 702 761773 - 762204 454 143 aa, chain - ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 6 139 2 135 140 144 52.0 4e-35 MSHLDDNCLFCKIIKGEIPSYKVFENDDVYAFLDISQVNPGHTLMVPKKHIVNLFDYSQE DAAKYLQYIPMIANAIKKIDPKISGMNIAANNGASADQVVMHSHIHFIPRFEGDGFKMAT RNNADQYTPEKYEEIANEIRKEF >gi|297149550|gb|ACGQ02000001.1| GENE 703 762289 - 763032 244 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 3 220 12 230 312 98 27 5e-19 MTLKIKNLSGGYHGVAVIKNLNLEIKPGEAVGLIGLNGAGKSTTIKHILGLLRPQKGLIS LNGLELTKNPDKFKQQLAYIPEVPVLYPELTLKEHIDLTILAYELNPEKAWKKANELLKI FRLDNKLDWLPIHFSKGMKQKVMLITAFMTDAELLVIDEPFTGLDPLSALSLTKLINKAI QDGRMVLMTSHVLSEVQTTISKFAVLNNGCVEASGSLDEIKHHYGLSSSDSFDKIYEILS REQVQNG >gi|297149550|gb|ACGQ02000001.1| GENE 704 763025 - 764209 823 394 aa, chain + ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 4 392 10 404 407 118 29.0 3e-26 MVELAKKRLEENIKKNLRYLRLVFNDFFVLALIFLFGGFMYWYAQNLPKIPANLWFYKPL LAIVFTISLVPGELVTLLRKADLQFLFVKDSEMAAYLKKLKGYSLVLPFIILTLVIGIAF PFAGIKLGIQLGGYSIIAILLYLLKAVYLQLEYLSLSFQYHYSKVLFYLIAFLGIYASLF DFSASAALLIALIGFAIYIFKQKLDSFDWSKAYEKERIRQNRVFIFYSMFTDVAEKAVVI KRRKYLDFLLNFQKTKSANQFLLQRNLLRNPDYISLLVRMTAFAVLLSLVITDTNMLLIL SALVTFLTAYQLLPIKNLYQRHIMYHVMPIKKDNTREVKSVITWALLLQVIVIAIVWIII FKIKVIALLNAAILLLFMLMITNLYLPIKLKKKR >gi|297149550|gb|ACGQ02000001.1| GENE 705 764218 - 764871 804 217 aa, chain + ## HITS:1 COG:L156302 KEGG:ns NR:ns ## COG: L156302 COG0220 # Protein_GI_number: 15672731 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Lactococcus lactis # 1 216 1 213 217 206 47.0 3e-53 MRLRNKPWAVKLVDEHPESVLQDPNPEIRIEWEKRFEDFSRPLEVEIGSGKGQFITTLAQ KHPDRNYVAIELQTTAAGIILRTKLEKKLDNLQILRGDAISIASFFAENSVDVLYLNFSD PWPKTRHEKRRLTYKDFLKNYETILKPTGHLEFKTDNSGLFSYSLMSLNNYGMTFDFVSV DLHHESEEIVAKNVETEYEHKFASKGNPIYALHAHFN >gi|297149550|gb|ACGQ02000001.1| GENE 706 764933 - 765253 382 106 aa, chain + ## HITS:1 COG:lin1650 KEGG:ns NR:ns ## COG: lin1650 COG0526 # Protein_GI_number: 16800718 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 10 105 8 103 103 105 45.0 2e-23 MEKIDALTKEKLAELTRNGRTVLEFSADWCPDCRFLDPIMPEIEKDFADSKFFQINRDNS VEVAKDLSILGIPSFVVYQDGQEIGRLVNKDRKTKDQVESFLRSLD >gi|297149550|gb|ACGQ02000001.1| GENE 707 765272 - 765919 768 215 aa, chain + ## HITS:1 COG:L195751 KEGG:ns NR:ns ## COG: L195751 COG0073 # Protein_GI_number: 15672372 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Lactococcus lactis # 1 200 1 201 208 167 44.0 1e-41 MIASTNKHAYPNTLIVILGQDKGRSHYEEKGQVTRVLDEDNKVIGFNFFNVDQYLNYDAL NNGEVELTAEDLAKLNQVLTDNGFSDQLKPSKPTLVYGYVKTCEAHPDSDHLHVTTVDVG LDDDVKIVCGAPNIEAGQKVVVALPGTLMPNGAQIWPGELRGVPSYGMICSARELGLAHA PQKRGIMVVPDNFEVGQKFEPTKCDELLASGAITL >gi|297149550|gb|ACGQ02000001.1| GENE 708 766110 - 766637 184 175 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1300 NR:ns ## KEGG: LGAS_1300 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 3 169 5 171 189 65 23.0 8e-10 MNLKQLEEVLYKYLSTERVKNFQVKTLCEVARVSRGSFYYHFKGIEDFSESIFIKDLNRI LLSNQYDNFSSRMLQLLKVLKDNQIFYTNLVYLGADKAFGKNVEVALFEILRYYARGRGC YSEPTLVRISKAMYHTIYYWIMHNCEDQIHQIHTCLFLQFQELDRQKELHDTIGM Prediction of potential genes in microbial genomes Time: Wed May 25 17:12:26 2011 Seq name: gi|297148814|gb|ACGQ02000002.1| Lactobacillus jensenii JV-V16 Contig170, whole genome shotgun sequence Length of sequence - 832947 bp Number of predicted genes - 728, with homology - 716 Number of transcription units - 323, operones - 181 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 1 - 332 94.0 # AE017198 [R:1879440..1882488] # 23S ribosomal RNA # Lactobacillus johnsonii NCC 533 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + 5S_RRNA 390 - 491 99.0 # EU184020 [D:4881..4998] # 5S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + TRNA 508 - 580 86.4 # Val TAC 0 0 + TRNA 587 - 659 83.3 # Lys TTT 0 0 + TRNA 674 - 755 61.1 # Leu TAG 0 0 + TRNA 786 - 858 80.3 # Thr TGT 0 0 + TRNA 870 - 941 79.2 # Gly GCC 0 0 + TRNA 954 - 1039 65.5 # Leu TAA 0 0 + TRNA 1049 - 1122 70.9 # Arg ACG 0 0 + TRNA 1127 - 1200 87.7 # Pro TGG 0 0 + TRNA 1232 - 1305 73.7 # Met CAT 0 0 + TRNA 1316 - 1389 87.0 # Met CAT 0 0 + TRNA 1424 - 1497 73.5 # Met CAT 0 0 + TRNA 1501 - 1574 65.5 # Asp GTC 0 0 + TRNA 1582 - 1654 78.2 # Phe GAA 0 0 + TRNA 1676 - 1746 66.1 # Gly TCC 0 0 + TRNA 1753 - 1826 91.8 # Ile GAT 0 0 + TRNA 1830 - 1919 53.3 # Ser GCT 0 0 - Term 1975 - 2008 3.1 1 1 Tu 1 . - CDS 2012 - 2950 714 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 2986 - 3045 8.1 + Prom 3021 - 3080 12.9 2 2 Tu 1 . + CDS 3146 - 5884 2984 ## COG1511 Predicted membrane protein + Term 5902 - 5951 8.3 + TRNA 6086 - 6157 64.4 # Glu TTC 0 0 + TRNA 6195 - 6285 63.8 # Ser TGA 0 0 + TRNA 6294 - 6367 76.8 # Met CAT 0 0 + TRNA 6371 - 6444 65.5 # Asp GTC 0 0 + TRNA 6450 - 6522 78.2 # Phe GAA 0 0 + TRNA 6532 - 6613 65.6 # Tyr GTA 0 0 + TRNA 6618 - 6688 60.9 # Trp CCA 0 0 + TRNA 6702 - 6777 58.5 # His GTG 0 0 + TRNA 6827 - 6897 67.2 # Cys GCA 0 0 + TRNA 6925 - 7008 61.6 # Leu CAA 0 0 + Prom 6934 - 6993 80.4 3 3 Op 1 25/0.000 + CDS 7040 - 8278 1455 ## COG0438 Glycosyltransferase 4 3 Op 2 4/0.039 + CDS 8271 - 9317 933 ## COG0438 Glycosyltransferase 5 3 Op 3 . + CDS 9314 - 10315 597 ## COG0392 Predicted integral membrane protein + Prom 10325 - 10384 6.0 6 4 Op 1 1/0.208 + CDS 10416 - 12491 2214 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 12501 - 12539 1.3 + Prom 12496 - 12555 6.0 7 4 Op 2 . + CDS 12588 - 13895 1602 ## COG0773 UDP-N-acetylmuramate-alanine ligase + Term 13899 - 13942 8.6 + Prom 13903 - 13962 8.0 8 5 Op 1 4/0.039 + CDS 13999 - 16656 2738 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 9 5 Op 2 4/0.039 + CDS 16669 - 17496 676 ## COG0266 Formamidopyrimidine-DNA glycosylase 10 5 Op 3 1/0.208 + CDS 17496 - 18110 466 ## COG0237 Dephospho-CoA kinase 11 5 Op 4 6/0.000 + CDS 18088 - 18555 654 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 12 5 Op 5 8/0.000 + CDS 18572 - 19915 1207 ## COG3611 Replication initiation/membrane attachment protein 13 5 Op 6 . + CDS 19919 - 20833 713 ## COG1484 DNA replication protein 14 5 Op 7 . + CDS 20858 - 22813 2170 ## COG3590 Predicted metalloendopeptidase + Term 23049 - 23090 8.0 + Prom 22816 - 22875 5.0 15 6 Op 1 16/0.000 + CDS 23103 - 25034 2686 ## COG0441 Threonyl-tRNA synthetase + Term 25181 - 25218 1.1 + Prom 25036 - 25095 10.9 16 6 Op 2 36/0.000 + CDS 25263 - 25772 402 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 17 6 Op 3 46/0.000 + CDS 25799 - 25999 345 ## PROTEIN SUPPORTED gi|227526539|ref|ZP_03956588.1| 50S ribosomal protein L35 18 6 Op 4 . + CDS 26043 - 26399 592 ## PROTEIN SUPPORTED gi|227526538|ref|ZP_03956587.1| ribosomal protein L20 + Term 26413 - 26450 4.0 + Prom 26541 - 26600 11.1 19 7 Op 1 6/0.000 + CDS 26633 - 27304 233 ## PROTEIN SUPPORTED gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P + Prom 27314 - 27373 3.0 20 7 Op 2 . + CDS 27397 - 29229 1598 ## COG1454 Alcohol dehydrogenase, class IV + Term 29244 - 29286 4.0 + Prom 29236 - 29295 7.5 21 8 Op 1 6/0.000 + CDS 29317 - 29847 552 ## COG2179 Predicted hydrolase of the HAD superfamily 22 8 Op 2 1/0.208 + CDS 29832 - 30941 1062 ## COG1161 Predicted GTPases 23 8 Op 3 9/0.000 + CDS 30955 - 31584 731 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 24 8 Op 4 6/0.000 + CDS 31652 - 32185 649 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 25 8 Op 5 . + CDS 32188 - 32535 327 ## COG0799 Uncharacterized homolog of plant Iojap protein 26 8 Op 6 . + CDS 32538 - 33692 1306 ## COG1323 Predicted nucleotidyltransferase 27 8 Op 7 1/0.208 + CDS 33692 - 34237 583 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein + Term 34323 - 34368 7.0 + Prom 34328 - 34387 8.2 28 9 Op 1 40/0.000 + CDS 34412 - 35134 1016 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 29 9 Op 2 3/0.065 + CDS 35109 - 36677 1195 ## COG0642 Signal transduction histidine kinase + Term 36687 - 36717 2.0 + Prom 36685 - 36744 6.0 30 10 Op 1 45/0.000 + CDS 36806 - 37675 289 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 31 10 Op 2 6/0.000 + CDS 37678 - 38415 679 ## COG0842 ABC-type multidrug transport system, permease component 32 10 Op 3 19/0.000 + CDS 38485 - 39537 1043 ## COG4585 Signal transduction histidine kinase 33 10 Op 4 . + CDS 39540 - 40145 550 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 40147 - 40195 10.3 34 11 Op 1 . - CDS 40180 - 41154 871 ## COG0706 Preprotein translocase subunit YidC 35 11 Op 2 . - CDS 41211 - 41486 409 ## COG0068 Hydrogenase maturation factor - Prom 41704 - 41763 7.2 + Prom 41481 - 41540 4.0 36 12 Op 1 . + CDS 41572 - 42339 178 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 37 12 Op 2 1/0.208 + CDS 42412 - 42711 363 ## COG1733 Predicted transcriptional regulators 38 13 Op 1 40/0.000 + CDS 43060 - 44109 1355 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 39 13 Op 2 . + CDS 44110 - 46518 2910 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 40 13 Op 3 . + CDS 46585 - 47061 891 ## COG0782 Transcription elongation factor + Term 47081 - 47131 10.2 - Term 47073 - 47111 6.2 41 14 Tu 1 . - CDS 47127 - 49685 2286 ## COG4485 Predicted membrane protein - Prom 49879 - 49938 7.9 + Prom 49623 - 49682 7.0 42 15 Op 1 . + CDS 49796 - 51922 2012 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 43 15 Op 2 . + CDS 51998 - 52147 266 ## PROTEIN SUPPORTED gi|227526513|ref|ZP_03956562.1| 50S ribosomal protein L33 + Term 52155 - 52192 4.8 44 16 Op 1 4/0.039 + CDS 52201 - 52749 581 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 45 16 Op 2 3/0.065 + CDS 52787 - 53476 869 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 46 16 Op 3 1/0.208 + CDS 53476 - 53685 156 ## COG4483 Uncharacterized protein conserved in bacteria 47 16 Op 4 . + CDS 53730 - 54131 391 ## COG0607 Rhodanese-related sulfurtransferase + Term 54145 - 54182 1.0 - Term 54125 - 54176 10.5 48 17 Tu 1 . - CDS 54221 - 54400 342 ## LGAS_1381 hypothetical protein - Prom 54423 - 54482 8.0 49 18 Op 1 . + CDS 54469 - 55389 981 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 50 18 Op 2 1/0.208 + CDS 55382 - 56629 1294 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance + Term 56647 - 56674 0.1 + Prom 56663 - 56722 11.2 51 19 Tu 1 . + CDS 56865 - 58220 1679 ## COG0174 Glutamine synthetase + Term 58246 - 58290 8.4 - Term 58241 - 58272 3.4 52 20 Tu 1 . - CDS 58276 - 59013 526 ## COG0775 Nucleoside phosphorylase - Prom 59054 - 59113 5.6 + Prom 59083 - 59142 9.1 53 21 Tu 1 . + CDS 59223 - 60305 1416 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein + Term 60333 - 60394 14.4 + Prom 60567 - 60626 6.3 54 22 Tu 1 . + CDS 60655 - 61833 1020 ## COG0477 Permeases of the major facilitator superfamily + Term 61842 - 61889 10.3 - Term 61836 - 61870 4.0 55 23 Tu 1 . - CDS 61881 - 62444 427 ## gi|297205744|ref|ZP_06923139.1| ABC superfamily ATP binding cassette transporter permease subunit - Prom 62673 - 62732 9.7 - Term 62547 - 62588 4.8 56 24 Op 1 . - CDS 62735 - 65113 3158 ## LBA1373 x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) 57 24 Op 2 . - CDS 65125 - 65481 292 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 65664 - 65723 79.6 + TRNA 65645 - 65721 88.0 # Arg TCT 0 0 - Term 65788 - 65851 7.2 58 25 Tu 1 . - CDS 65861 - 67288 1368 ## LSA1108 putative chromosome segregation ATPase - Prom 67487 - 67546 9.3 59 26 Op 1 . + CDS 67561 - 68523 1174 ## COG1482 Phosphomannose isomerase 60 26 Op 2 . + CDS 68537 - 68929 399 ## LCRIS_00750 integral membrane protein 61 26 Op 3 40/0.000 + CDS 68929 - 69651 917 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 62 26 Op 4 . + CDS 69669 - 71123 1389 ## COG0642 Signal transduction histidine kinase + Term 71183 - 71230 6.2 63 27 Tu 1 . + CDS 71691 - 73997 2322 ## Lm4b_02044 membrane associated lipoprotein + Prom 74041 - 74100 2.7 64 28 Tu 1 . + CDS 74164 - 80001 7353 ## SaurJH9_1495 hypothetical protein + Prom 80120 - 80179 1.9 65 29 Tu 1 . + CDS 80340 - 83669 3992 ## FI9785_83 putative secreted protein + Term 83718 - 83764 11.5 + Prom 84086 - 84145 5.0 66 30 Op 1 . + CDS 84243 - 84518 109 ## gi|260661092|ref|ZP_05862006.1| predicted protein 67 30 Op 2 . + CDS 84561 - 85097 58 ## gi|256850880|ref|ZP_05556269.1| surface anchor protein + Term 85220 - 85271 0.2 68 31 Op 1 . + CDS 85508 - 90121 5342 ## ROD_29581 large repetitive protein + Term 90146 - 90192 5.2 + Prom 90196 - 90255 8.0 69 31 Op 2 . + CDS 90307 - 91572 1580 ## COG3919 Predicted ATP-grasp enzyme + Term 91581 - 91634 16.2 - Term 91568 - 91622 11.0 70 32 Tu 1 . - CDS 91624 - 93822 1498 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 93843 - 93902 5.8 + Prom 93871 - 93930 8.9 71 33 Op 1 . + CDS 93953 - 94576 548 ## COG4767 Glycopeptide antibiotics resistance protein 72 33 Op 2 . + CDS 94647 - 95984 2172 ## COG0166 Glucose-6-phosphate isomerase + Term 96031 - 96065 5.3 + Prom 95994 - 96053 4.4 73 34 Op 1 . + CDS 96100 - 97449 1395 ## COG0477 Permeases of the major facilitator superfamily + Prom 97455 - 97514 6.9 74 34 Op 2 . + CDS 97541 - 97780 347 ## gi|256850887|ref|ZP_05556276.1| predicted protein + Term 97815 - 97848 1.2 - TRNA 97968 - 98043 56.3 # Gln CTG 0 0 - TRNA 98049 - 98120 62.2 # Glu CTC 0 0 + Prom 98125 - 98184 10.3 75 35 Tu 1 . + CDS 98213 - 99220 1174 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Term 99206 - 99244 6.4 76 36 Tu 1 . - CDS 99249 - 100604 1452 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 100763 - 100822 6.7 77 37 Op 1 3/0.065 + CDS 100743 - 101348 645 ## COG1435 Thymidine kinase 78 37 Op 2 32/0.000 + CDS 101383 - 102471 1777 ## COG0216 Protein chain release factor A 79 37 Op 3 10/0.000 + CDS 102464 - 103306 302 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 80 37 Op 4 . + CDS 103306 - 104307 1322 ## COG0009 Putative translation factor (SUA5) + Term 104320 - 104353 4.0 + Prom 104309 - 104368 11.2 81 38 Tu 1 . + CDS 104393 - 105022 888 ## COG0035 Uracil phosphoribosyltransferase + Prom 105053 - 105112 5.8 82 39 Op 1 40/0.000 + CDS 105154 - 105870 773 ## COG0356 F0F1-type ATP synthase, subunit a 83 39 Op 2 37/0.000 + CDS 105892 - 106107 402 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 84 39 Op 3 38/0.000 + CDS 106146 - 106655 722 ## COG0711 F0F1-type ATP synthase, subunit b 85 39 Op 4 41/0.000 + CDS 106655 - 107203 739 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 86 39 Op 5 42/0.000 + CDS 107218 - 108732 1768 ## COG0056 F0F1-type ATP synthase, alpha subunit 87 39 Op 6 42/0.000 + CDS 108743 - 109705 1283 ## COG0224 F0F1-type ATP synthase, gamma subunit 88 39 Op 7 42/0.000 + CDS 109727 - 111169 1886 ## COG0055 F0F1-type ATP synthase, beta subunit 89 39 Op 8 . + CDS 111181 - 111624 603 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 111627 - 111667 8.3 90 40 Op 1 . + CDS 111675 - 111911 252 ## LBUL_0645 hypothetical protein + Prom 111913 - 111972 2.9 91 40 Op 2 . + CDS 111992 - 112981 1454 ## COG1077 Actin-like ATPase involved in cell morphogenesis 92 41 Op 1 . + CDS 113090 - 113278 142 ## COG0759 Uncharacterized conserved protein 93 41 Op 2 . + CDS 113287 - 113514 319 ## lhv_0815 hypothetical protein 94 41 Op 3 . + CDS 113534 - 114724 1084 ## COG0772 Bacterial cell division membrane protein + Term 114729 - 114770 9.2 - Term 114717 - 114758 9.2 95 42 Op 1 . - CDS 114784 - 115224 662 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 115301 - 115360 10.6 96 42 Op 2 . - CDS 115389 - 116567 443 ## COG3328 Transposase and inactivated derivatives - Prom 116780 - 116839 7.4 97 43 Op 1 . - CDS 117252 - 118550 1252 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 98 43 Op 2 . - CDS 118547 - 119014 463 ## COG5506 Uncharacterized conserved protein - Prom 119034 - 119093 1.9 + Prom 118796 - 118855 6.3 99 44 Tu 1 . + CDS 118966 - 119139 68 ## + Term 119164 - 119199 -0.0 - Term 119029 - 119079 11.2 100 45 Tu 1 . - CDS 119096 - 119803 1212 ## PROTEIN SUPPORTED gi|227526453|ref|ZP_03956502.1| 30S ribosomal protein S4 - Prom 119884 - 119943 6.5 + Prom 119701 - 119760 10.6 101 46 Op 1 3/0.065 + CDS 120001 - 121734 1685 ## COG4477 Negative regulator of septation ring formation + Term 121781 - 121810 1.4 + Prom 121738 - 121797 2.9 102 46 Op 2 7/0.000 + CDS 121821 - 122975 1089 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 103 46 Op 3 . + CDS 122985 - 124199 1352 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase 104 46 Op 4 . + CDS 124199 - 124903 690 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 125051 - 125110 5.1 105 47 Op 1 8/0.000 + CDS 125163 - 127814 3191 ## COG0525 Valyl-tRNA synthetase 106 47 Op 2 . + CDS 127816 - 129072 939 ## COG0285 Folylpolyglutamate synthase 107 47 Op 3 . + CDS 129062 - 129742 748 ## COG0637 Predicted phosphatase/phosphohexomutase 108 47 Op 4 4/0.039 + CDS 129777 - 130400 604 ## COG2003 DNA repair proteins + Prom 130402 - 130461 5.0 109 48 Op 1 22/0.000 + CDS 130499 - 131503 1356 ## COG1077 Actin-like ATPase involved in cell morphogenesis + Term 131505 - 131536 0.9 110 48 Op 2 . + CDS 131555 - 132412 776 ## COG1792 Cell shape-determining protein 111 48 Op 3 . + CDS 132412 - 132957 648 ## LJ0964 rod shape-determining protein MreD + Term 132961 - 132997 5.1 - Term 132943 - 132990 9.5 112 49 Tu 1 . - CDS 133000 - 133119 100 ## - Prom 133185 - 133244 6.0 + Prom 132985 - 133044 6.3 113 50 Tu 1 . + CDS 133211 - 133540 215 ## LCRIS_00820 hypothetical protein + Term 133601 - 133640 6.0 114 51 Tu 1 . - CDS 133542 - 133745 160 ## gi|297205803|ref|ZP_06923198.1| endoribonuclease L-PSP - Prom 133930 - 133989 5.5 + Prom 133606 - 133665 8.8 115 52 Op 1 29/0.000 + CDS 133738 - 134169 575 ## COG2001 Uncharacterized protein conserved in bacteria 116 52 Op 2 . + CDS 134166 - 135119 808 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 117 52 Op 3 . + CDS 135132 - 135506 476 ## LCRIS_00823 cell division protein FtsL 118 52 Op 4 4/0.039 + CDS 135509 - 137671 2287 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 119 52 Op 5 28/0.000 + CDS 137692 - 138651 1044 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 120 52 Op 6 4/0.039 + CDS 138657 - 140027 1750 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 121 52 Op 7 3/0.065 + CDS 140030 - 141142 1236 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 122 52 Op 8 25/0.000 + CDS 141173 - 142027 959 ## COG1589 Cell division septal protein + Prom 142029 - 142088 2.7 123 52 Op 9 35/0.000 + CDS 142109 - 143479 1448 ## COG0849 Actin-like ATPase involved in cell division 124 52 Op 10 . + CDS 143494 - 144867 1597 ## COG0206 Cell division GTPase 125 52 Op 11 . + CDS 144883 - 145344 579 ## COG1799 Uncharacterized protein conserved in bacteria 126 52 Op 12 . + CDS 145344 - 145631 368 ## LCRIS_00832 cell division membrane protein 127 52 Op 13 6/0.000 + CDS 145675 - 146499 1149 ## PROTEIN SUPPORTED gi|227526426|ref|ZP_03956475.1| ribosomal protein S4e 128 52 Op 14 6/0.000 + CDS 146505 - 147200 798 ## COG3599 Cell division initiation protein + Term 147327 - 147375 0.5 + Prom 147240 - 147299 3.4 129 52 Op 15 . + CDS 147417 - 150209 3297 ## COG0060 Isoleucyl-tRNA synthetase 130 52 Op 16 2/0.117 + CDS 150209 - 150430 298 ## COG1278 Cold shock proteins 131 52 Op 17 . + CDS 150430 - 150996 784 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 132 52 Op 18 . + CDS 150989 - 151267 236 ## gi|256850941|ref|ZP_05556330.1| predicted protein 133 52 Op 19 . + CDS 151281 - 151970 684 ## COG0775 Nucleoside phosphorylase 134 52 Op 20 . + CDS 151989 - 153152 1140 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 135 52 Op 21 . + CDS 153204 - 153539 415 ## FI9785_1219 hypothetical protein 136 52 Op 22 . + CDS 153553 - 154680 1491 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + Term 154686 - 154738 12.1 + Prom 154682 - 154741 7.8 137 53 Tu 1 . + CDS 154830 - 155147 408 ## gi|256850946|ref|ZP_05556335.1| predicted protein + Prom 155343 - 155402 4.4 138 54 Tu 1 . + CDS 155567 - 163414 10316 ## LGAS_0942 adhesion exoprotein 139 55 Op 1 1/0.208 - CDS 163511 - 163819 482 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 140 55 Op 2 . - CDS 163831 - 164229 465 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain - Prom 164255 - 164314 7.6 + Prom 164240 - 164299 11.7 141 56 Op 1 . + CDS 164333 - 165220 554 ## COG0583 Transcriptional regulator 142 56 Op 2 . + CDS 165239 - 165898 649 ## COG0406 Fructose-2,6-bisphosphatase 143 56 Op 3 . + CDS 165898 - 166539 759 ## LGAS_1187 TPR repeat-containing protein 144 56 Op 4 . + CDS 166539 - 168893 2112 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 168930 - 168989 8.2 - Term 168923 - 168972 8.1 145 57 Op 1 7/0.000 - CDS 169001 - 170683 2216 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 146 57 Op 2 1/0.208 - CDS 170687 - 170911 364 ## COG5503 Uncharacterized conserved small protein - Prom 170980 - 171039 5.6 - Term 171015 - 171061 6.2 147 58 Tu 1 . - CDS 171090 - 171644 586 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 171665 - 171724 5.8 + Prom 171713 - 171772 5.6 148 59 Tu 1 . + CDS 171878 - 173722 2412 ## COG1217 Predicted membrane GTPase involved in stress response + Term 173734 - 173789 13.2 + Prom 173733 - 173792 8.1 149 60 Op 1 . + CDS 173830 - 175023 1436 ## COG0772 Bacterial cell division membrane protein 150 60 Op 2 . + CDS 175020 - 175352 261 ## lhv_0884 hypothetical protein 151 60 Op 3 14/0.000 + CDS 175349 - 175900 380 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 152 60 Op 4 4/0.039 + CDS 175902 - 176399 323 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 153 60 Op 5 . + CDS 176389 - 177420 412 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 177426 - 177457 1.0 154 61 Op 1 4/0.039 + CDS 177500 - 178150 644 ## COG1555 DNA uptake protein and related DNA-binding proteins 155 61 Op 2 4/0.039 + CDS 178119 - 180371 1481 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 156 61 Op 3 . + CDS 180385 - 181371 797 ## COG1466 DNA polymerase III, delta subunit + Term 181383 - 181417 3.2 - Term 181370 - 181404 3.2 157 62 Tu 1 . - CDS 181423 - 181674 396 ## PROTEIN SUPPORTED gi|227526394|ref|ZP_03956443.1| 30S ribosomal protein S20 - Prom 181852 - 181911 7.5 + Prom 181732 - 181791 7.7 158 63 Tu 1 . + CDS 181881 - 182150 453 ## PROTEIN SUPPORTED gi|227526393|ref|ZP_03956442.1| 30S ribosomal protein S15 + Term 182164 - 182199 5.1 + Prom 182212 - 182271 5.0 159 64 Op 1 . + CDS 182292 - 184031 2152 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 160 64 Op 2 . + CDS 184024 - 184857 578 ## LCRIS_00864 BS_ysoA-like protein with TPR repeats + Prom 184859 - 184918 4.7 161 65 Tu 1 . + CDS 185032 - 186222 1368 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 186238 - 186279 8.3 + Prom 186228 - 186287 10.6 162 66 Tu 1 4/0.039 + CDS 186424 - 187737 1986 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) + Term 187743 - 187801 3.5 + Prom 187765 - 187824 3.1 163 67 Op 1 4/0.039 + CDS 187851 - 189134 251 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 164 67 Op 2 . + CDS 189109 - 189708 547 ## COG0218 Predicted GTPase + Term 189714 - 189745 3.1 165 68 Tu 1 . - CDS 189726 - 189866 216 ## - Prom 189984 - 190043 9.0 166 69 Tu 1 . + CDS 190050 - 190601 488 ## COG0778 Nitroreductase + Term 190702 - 190728 -0.3 + Prom 190756 - 190815 11.8 167 70 Op 1 . + CDS 191014 - 191202 225 ## gi|256850973|ref|ZP_05556362.1| predicted protein + Prom 191204 - 191263 8.3 168 70 Op 2 . + CDS 191286 - 191741 645 ## gi|297205857|ref|ZP_06923252.1| conserved hypothetical protein + Term 191958 - 191995 1.0 169 71 Op 1 . + CDS 192091 - 193098 1161 ## COG2502 Asparagine synthetase A 170 71 Op 2 1/0.208 + CDS 193147 - 194727 1410 ## COG0474 Cation transport ATPase 171 71 Op 3 . + CDS 194724 - 195524 721 ## COG0474 Cation transport ATPase 172 72 Op 1 13/0.000 - CDS 195672 - 196472 878 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 173 72 Op 2 13/0.000 - CDS 196462 - 197244 782 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 174 72 Op 3 9/0.000 - CDS 197244 - 197735 395 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 175 72 Op 4 . - CDS 197762 - 198157 308 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 198387 - 198446 11.1 + Prom 198346 - 198405 7.8 176 73 Tu 1 . + CDS 198523 - 199332 867 ## COG2746 Aminoglycoside N3'-acetyltransferase + Term 199498 - 199557 12.7 - Term 199496 - 199532 4.2 177 74 Op 1 . - CDS 199537 - 200475 935 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Term 200485 - 200523 5.0 178 74 Op 2 . - CDS 200541 - 201923 1281 ## COG0531 Amino acid transporters - Prom 201960 - 202019 12.2 - Term 202776 - 202821 4.2 179 75 Tu 1 . - CDS 202832 - 203443 247 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 - Prom 203469 - 203528 5.6 + Prom 203425 - 203484 7.4 180 76 Op 1 . + CDS 203561 - 205363 1543 ## COG0322 Nuclease subunit of the excinuclease complex + Prom 205368 - 205427 5.3 181 76 Op 2 . + CDS 205447 - 206745 1636 ## COG0536 Predicted GTPase 182 76 Op 3 . + CDS 206764 - 208680 1380 ## COG1835 Predicted acyltransferases 183 76 Op 4 4/0.039 + CDS 208696 - 209625 925 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 184 76 Op 5 . + CDS 209629 - 210423 789 ## COG0300 Short-chain dehydrogenases of various substrate specificities 185 76 Op 6 . + CDS 210423 - 210683 296 ## LGAS_0876 hypothetical protein + Prom 210688 - 210747 2.6 186 77 Op 1 . + CDS 210790 - 210975 321 ## PROTEIN SUPPORTED gi|227526363|ref|ZP_03956412.1| 50S ribosomal protein L32 + Term 210982 - 211013 -0.7 187 77 Op 2 . + CDS 211044 - 212609 1733 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 212611 - 212659 11.1 + Prom 212627 - 212686 7.1 188 78 Op 1 . + CDS 212714 - 213046 231 ## gi|297205878|ref|ZP_06923273.1| 1,4-alpha-glucan-branching enzyme 189 78 Op 2 . + CDS 213055 - 213438 320 ## gi|297205879|ref|ZP_06923274.1| conserved hypothetical protein + Term 213447 - 213482 4.3 - Term 213435 - 213470 5.1 190 79 Tu 1 . - CDS 213489 - 213692 348 ## LGAS_0879 hypothetical protein - Prom 213921 - 213980 8.4 + Prom 213725 - 213784 10.9 191 80 Tu 1 . + CDS 213804 - 216923 3414 ## COG0587 DNA polymerase III, alpha subunit + Prom 216947 - 217006 5.1 192 81 Op 1 12/0.000 + CDS 217090 - 218049 1212 ## COG0205 6-phosphofructokinase 193 81 Op 2 . + CDS 218081 - 219850 2475 ## COG0469 Pyruvate kinase + Term 219863 - 219927 11.1 + Prom 219896 - 219955 11.5 194 82 Op 1 . + CDS 219976 - 220854 458 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains 195 82 Op 2 . + CDS 220841 - 221743 678 ## COG4974 Site-specific recombinase XerD 196 82 Op 3 . + CDS 221746 - 222084 475 ## LCRIS_01011 reductase 197 82 Op 4 21/0.000 + CDS 222087 - 222815 569 ## COG1354 Uncharacterized conserved protein 198 82 Op 5 12/0.000 + CDS 222819 - 223418 705 ## COG1386 Predicted transcriptional regulator containing the HTH domain 199 82 Op 6 . + CDS 223418 - 224131 780 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Term 224302 - 224337 5.2 - Term 223929 - 223967 2.1 200 83 Tu 1 . - CDS 224014 - 224484 169 ## - Prom 224668 - 224727 4.2 201 84 Tu 1 . + CDS 224348 - 224920 528 ## COG3601 Predicted membrane protein + Term 224935 - 224969 -0.6 + Prom 224931 - 224990 6.1 202 85 Op 1 . + CDS 225014 - 225514 435 ## LBA0966 putative N-acetylmuramidase (EC:3.5.1.28) 203 85 Op 2 21/0.000 + CDS 225560 - 226225 228 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 + Prom 226240 - 226299 3.9 204 85 Op 3 3/0.065 + CDS 226320 - 227528 2004 ## PROTEIN SUPPORTED gi|227526346|ref|ZP_03956395.1| 30S ribosomal protein S1 + Term 227535 - 227589 2.3 205 86 Tu 1 3/0.065 + CDS 227607 - 228917 1551 ## COG1160 Predicted GTPases + Prom 228938 - 228997 8.4 206 87 Op 1 . + CDS 229136 - 229411 553 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 229418 - 229451 -0.5 + Prom 229435 - 229494 6.9 207 87 Op 2 . + CDS 229525 - 230775 1449 ## COG0457 FOG: TPR repeat + Term 230777 - 230832 13.1 + Prom 230779 - 230838 8.9 208 88 Op 1 . + CDS 231004 - 260331 45957 ## LGAS_0942 adhesion exoprotein 209 88 Op 2 . + CDS 260339 - 267601 9495 ## LGAS_0942 adhesion exoprotein + Term 267628 - 267663 4.4 210 89 Op 1 . + CDS 268025 - 268939 981 ## COG1316 Transcriptional regulator 211 89 Op 2 5/0.026 + CDS 268954 - 269826 1036 ## COG3944 Capsular polysaccharide biosynthesis protein 212 89 Op 3 3/0.065 + CDS 269832 - 270608 984 ## COG0489 ATPases involved in chromosome partitioning 213 89 Op 4 . + CDS 270611 - 271381 671 ## COG4464 Capsular polysaccharide biosynthesis protein 214 89 Op 5 . + CDS 271415 - 272059 798 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis + Prom 272228 - 272287 7.4 215 90 Op 1 . + CDS 272451 - 273266 490 ## LSL_1525 hypothetical protein + Term 273283 - 273319 -0.3 216 90 Op 2 . + CDS 273365 - 274147 768 ## COG1209 dTDP-glucose pyrophosphorylase 217 90 Op 3 . + CDS 274170 - 275402 887 ## COG0438 Glycosyltransferase 218 90 Op 4 11/0.000 + CDS 275403 - 275984 744 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 219 90 Op 5 11/0.000 + CDS 275996 - 277027 1024 ## COG1088 dTDP-D-glucose 4,6-dehydratase + Term 277034 - 277070 4.9 220 90 Op 6 . + CDS 277085 - 277924 898 ## COG1091 dTDP-4-dehydrorhamnose reductase + Prom 277941 - 278000 6.5 221 91 Tu 1 . + CDS 278195 - 279373 443 ## COG3328 Transposase and inactivated derivatives 222 92 Op 1 11/0.000 - CDS 279412 - 279981 331 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 223 92 Op 2 1/0.208 - CDS 279988 - 281142 1055 ## COG0438 Glycosyltransferase 224 92 Op 3 5/0.026 - CDS 281150 - 282262 1453 ## COG0562 UDP-galactopyranose mutase 225 92 Op 4 . - CDS 282296 - 283297 807 ## COG1216 Predicted glycosyltransferases 226 92 Op 5 . - CDS 283297 - 284295 571 ## PEPE_0571 glycosyltransferase 227 92 Op 6 8/0.000 - CDS 284324 - 285475 868 ## COG0438 Glycosyltransferase 228 92 Op 7 . - CDS 285492 - 285965 310 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 286015 - 286074 5.0 229 93 Tu 1 . - CDS 286105 - 287283 443 ## COG3328 Transposase and inactivated derivatives - Prom 287437 - 287496 5.9 + Prom 287183 - 287242 2.1 230 94 Tu 1 . + CDS 287282 - 288298 851 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid + Term 288367 - 288402 1.1 + Prom 288399 - 288458 5.7 231 95 Op 1 . + CDS 288491 - 289303 849 ## LCRIS_00802 hypothetical protein 232 95 Op 2 . + CDS 289324 - 289539 223 ## gi|282931950|ref|ZP_06337415.1| conserved hypothetical protein + Term 289654 - 289686 4.2 - Term 289642 - 289674 4.2 233 96 Tu 1 . - CDS 289679 - 290122 494 ## COG0789 Predicted transcriptional regulators - Prom 290175 - 290234 7.4 + Prom 290131 - 290190 5.8 234 97 Tu 1 . + CDS 290226 - 291260 1397 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Term 291276 - 291315 0.1 + Prom 291662 - 291721 7.7 235 98 Tu 1 . + CDS 291859 - 292059 167 ## gi|297205925|ref|ZP_06923320.1| conserved hypothetical protein + Term 292088 - 292124 4.0 + Prom 292155 - 292214 7.3 236 99 Tu 1 . + CDS 292247 - 293422 1324 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 293430 - 293462 4.0 + Prom 293424 - 293483 7.0 237 100 Op 1 . + CDS 293554 - 293649 91 ## 238 100 Op 2 . + CDS 293631 - 295229 1638 ## gi|297205927|ref|ZP_06923322.1| conserved hypothetical protein + Term 295237 - 295274 8.0 + Prom 295481 - 295540 10.6 239 101 Op 1 . + CDS 295636 - 296514 552 ## COG0583 Transcriptional regulator + Prom 296522 - 296581 4.5 240 101 Op 2 . + CDS 296616 - 296795 357 ## gi|256851028|ref|ZP_05556417.1| predicted protein + Term 296825 - 296877 4.0 + Prom 297099 - 297158 7.6 241 102 Tu 1 . + CDS 297245 - 298699 1343 ## COG0471 Di- and tricarboxylate transporters + Term 298719 - 298768 8.1 242 103 Tu 1 . - CDS 298911 - 299471 151 ## lhv_1083 putative transposase + Prom 299821 - 299880 8.1 243 104 Op 1 . + CDS 300015 - 300218 182 ## gi|238855598|ref|ZP_04645899.1| conserved hypothetical protein 244 104 Op 2 . + CDS 300320 - 300466 68 ## gi|282931950|ref|ZP_06337415.1| conserved hypothetical protein + Term 300486 - 300527 8.1 - Term 300468 - 300519 9.1 245 105 Tu 1 . - CDS 300552 - 301856 1052 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 301935 - 301994 9.0 + Prom 302194 - 302253 8.6 246 106 Tu 1 . + CDS 302283 - 304094 2741 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 304111 - 304161 9.1 + Prom 304136 - 304195 10.8 247 107 Op 1 . + CDS 304321 - 304515 320 ## PROTEIN SUPPORTED gi|227526303|ref|ZP_03956352.1| 50S ribosomal protein L33 248 107 Op 2 . + CDS 304531 - 305499 943 ## EF0573 hypothetical protein + Term 305539 - 305570 -0.8 + Prom 305520 - 305579 11.3 249 108 Op 1 . + CDS 305606 - 306751 1202 ## COG1929 Glycerate kinase + Term 306847 - 306883 -0.9 + Prom 306797 - 306856 7.4 250 108 Op 2 . + CDS 306900 - 307265 616 ## COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase + Term 307279 - 307332 14.1 - Term 307671 - 307707 5.1 251 109 Op 1 . - CDS 307759 - 307998 393 ## gi|256851075|ref|ZP_05556464.1| predicted protein 252 109 Op 2 . - CDS 308027 - 308236 279 ## lhv_0182 hypothetical protein - Prom 308382 - 308441 7.0 + Prom 308340 - 308399 6.7 253 110 Op 1 4/0.039 + CDS 308431 - 311649 3968 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 254 110 Op 2 27/0.000 + CDS 311668 - 313320 2127 ## COG0286 Type I restriction-modification system methyltransferase subunit 255 110 Op 3 . + CDS 313343 - 314629 541 ## COG0732 Restriction endonuclease S subunits + Term 314636 - 314670 3.2 - Term 314618 - 314662 8.1 256 111 Op 1 2/0.117 - CDS 314665 - 315588 702 ## COG0582 Integrase 257 111 Op 2 . - CDS 315632 - 316753 552 ## COG0732 Restriction endonuclease S subunits + Prom 316874 - 316933 8.2 258 112 Tu 1 . + CDS 317111 - 318034 883 ## COG1715 Restriction endonuclease + Term 318243 - 318282 3.4 + Prom 318461 - 318520 7.3 259 113 Tu 1 . + CDS 318573 - 318869 283 ## PEPE_0527 transcriptional regulator + Prom 318875 - 318934 5.3 260 114 Op 1 . + CDS 318973 - 319242 455 ## PROTEIN SUPPORTED gi|227526287|ref|ZP_03956336.1| ribosomal protein S14 261 114 Op 2 . + CDS 319257 - 319682 363 ## EF0587 hypothetical protein 262 115 Tu 1 . - CDS 319675 - 319830 133 ## - Prom 319942 - 320001 4.7 + Prom 319857 - 319916 9.8 263 116 Op 1 . + CDS 319980 - 320531 630 ## COG3600 Uncharacterized phage-associated protein 264 116 Op 2 . + CDS 320561 - 320947 256 ## COG3654 Prophage maintenance system killer protein + Term 320954 - 320995 8.2 + Prom 321935 - 321994 7.5 265 117 Op 1 . + CDS 322048 - 322872 605 ## LJ1019 hypothetical protein + Term 322906 - 322951 -0.9 + Prom 322899 - 322958 8.8 266 117 Op 2 . + CDS 322995 - 323498 450 ## LCRIS_00174 RNA polymerase sigma factor + Term 323675 - 323728 11.1 + Prom 323575 - 323634 8.5 267 118 Op 1 2/0.117 + CDS 323740 - 324618 672 ## COG3711 Transcriptional antiterminator 268 118 Op 2 2/0.117 + CDS 324596 - 324940 388 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 269 118 Op 3 8/0.000 + CDS 324960 - 326369 1355 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Prom 326376 - 326435 1.6 270 118 Op 4 . + CDS 326457 - 328097 1517 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 271 118 Op 5 . + CDS 328125 - 329408 1420 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 272 118 Op 6 . + CDS 329428 - 331314 2098 ## SPP_0500 hypothetical protein + Term 331373 - 331417 11.2 + Prom 331410 - 331469 8.2 273 119 Op 1 . + CDS 331492 - 331839 206 ## Ldb1019 hypothetical protein 274 119 Op 2 . + CDS 331847 - 333523 1878 ## COG2759 Formyltetrahydrofolate synthetase 275 119 Op 3 15/0.000 + CDS 333523 - 333981 315 ## COG0597 Lipoprotein signal peptidase 276 119 Op 4 . + CDS 333981 - 334886 1029 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 277 119 Op 5 24/0.000 + CDS 334895 - 335953 985 ## COG0505 Carbamoylphosphate synthase small subunit 278 119 Op 6 . + CDS 335955 - 339128 2700 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Prom 339147 - 339206 7.2 279 120 Tu 1 . + CDS 339232 - 339405 240 ## gi|282933762|ref|ZP_06339117.1| hypothetical protein HMPREF0886_2978 + Term 339462 - 339517 13.9 + Prom 339515 - 339574 7.7 280 121 Tu 1 . + CDS 339702 - 340250 511 ## gi|256851106|ref|ZP_05556495.1| predicted protein + Prom 340570 - 340629 12.1 281 122 Tu 1 . + CDS 340650 - 340871 359 ## gi|256851107|ref|ZP_05556496.1| conserved hypothetical protein + Term 340918 - 340952 3.1 + Prom 340909 - 340968 8.7 282 123 Op 1 . + CDS 340994 - 341284 215 ## LGG_02056 phage-related infection protein 283 123 Op 2 . + CDS 341298 - 342221 833 ## COG3600 Uncharacterized phage-associated protein + Prom 342269 - 342328 9.5 284 124 Tu 1 . + CDS 342383 - 342667 337 ## gi|256851110|ref|ZP_05556499.1| predicted protein + Term 342687 - 342728 -0.1 + Prom 343479 - 343538 7.8 285 125 Tu 1 . + CDS 343629 - 344684 897 ## COG0582 Integrase + Term 344689 - 344724 1.8 + Prom 344727 - 344786 4.6 286 126 Tu 1 . + CDS 344899 - 345267 219 ## LCRIS_01143 transcriptional regulator, XRE family + Term 345269 - 345305 0.4 - Term 345238 - 345307 10.1 287 127 Tu 1 . - CDS 345309 - 346811 822 ## LCRIS_01706 hypothetical protein - Prom 346873 - 346932 8.4 - Term 346914 - 346964 10.7 288 128 Op 1 . - CDS 346965 - 347630 710 ## gi|256851114|ref|ZP_05556503.1| predicted protein - Prom 347650 - 347709 6.1 289 128 Op 2 . - CDS 347715 - 348695 742 ## gi|256851115|ref|ZP_05556504.1| predicted protein - Prom 348725 - 348784 5.9 - Term 348755 - 348795 6.8 290 129 Op 1 . - CDS 348820 - 349287 701 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) 291 129 Op 2 . - CDS 349367 - 349612 303 ## gi|256851117|ref|ZP_05556506.1| predicted protein - Prom 349645 - 349704 6.0 - Term 349677 - 349706 1.4 292 130 Op 1 . - CDS 349719 - 350603 941 ## COG1307 Uncharacterized protein conserved in bacteria 293 130 Op 2 . - CDS 350677 - 351090 368 ## LCRIS_01133 L-fucose operon regulator - Prom 351191 - 351250 7.8 + Prom 351209 - 351268 9.2 294 131 Tu 1 . + CDS 351370 - 353058 1718 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP + Term 353078 - 353123 6.2 - Term 353071 - 353106 5.1 295 132 Op 1 . - CDS 353125 - 353724 897 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Term 353738 - 353773 1.9 296 132 Op 2 . - CDS 353791 - 354726 1278 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase 297 132 Op 3 24/0.000 - CDS 354793 - 357273 2944 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 298 132 Op 4 . - CDS 357286 - 359229 2115 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 359287 - 359346 6.5 + Prom 359232 - 359291 5.5 299 133 Tu 1 . + CDS 359314 - 359982 725 ## COG0344 Predicted membrane protein - Term 359947 - 359986 5.2 300 134 Op 1 . - CDS 360002 - 360886 1008 ## COG2017 Galactose mutarotase and related enzymes 301 134 Op 2 24/0.000 - CDS 360900 - 362282 1265 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 302 134 Op 3 4/0.039 - CDS 362283 - 362813 870 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 303 134 Op 4 5/0.026 - CDS 362816 - 363724 1135 ## COG4974 Site-specific recombinase XerD 304 134 Op 5 6/0.000 - CDS 363717 - 365036 1601 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation - Prom 365066 - 365125 7.4 - Term 365059 - 365114 5.6 305 135 Op 1 13/0.000 - CDS 365136 - 367223 2273 ## COG0550 Topoisomerase IA - Prom 367254 - 367313 5.0 306 135 Op 2 . - CDS 367385 - 368233 678 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 307 135 Op 3 . - CDS 368298 - 369191 519 ## gi|256851133|ref|ZP_05556522.1| predicted protein - Prom 369287 - 369346 7.9 - Term 369329 - 369369 6.7 308 136 Tu 1 . - CDS 369593 - 369724 71 ## - Prom 369776 - 369835 4.9 + Prom 369651 - 369710 9.6 309 137 Tu 1 . + CDS 369735 - 370163 476 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 370183 - 370224 4.0 - Term 370179 - 370205 -0.6 310 138 Op 1 8/0.000 - CDS 370210 - 370968 847 ## COG0164 Ribonuclease HII 311 138 Op 2 . - CDS 370965 - 371807 923 ## COG1161 Predicted GTPases - Prom 371856 - 371915 4.5 - Term 371899 - 371925 -1.0 312 139 Op 1 . - CDS 371927 - 372703 950 ## lhv_1070 Na+/H+ antiporter 313 139 Op 2 . - CDS 372772 - 373407 367 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters - Prom 373491 - 373550 7.9 - Term 373534 - 373565 2.1 314 140 Tu 1 . - CDS 373567 - 373791 311 ## COG4479 Uncharacterized protein conserved in bacteria - Prom 373823 - 373882 8.8 - Term 373851 - 373887 3.1 315 141 Tu 1 . - CDS 373899 - 374741 1141 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 374887 - 374946 9.4 + Prom 374748 - 374807 7.6 316 142 Tu 1 . + CDS 374890 - 375555 566 ## COG1272 Predicted membrane protein, hemolysin III homolog + Term 375566 - 375614 7.3 - Term 375554 - 375602 7.3 317 143 Tu 1 . - CDS 375619 - 376101 440 ## BcerKBAB4_5408 hypothetical protein - Prom 376125 - 376184 5.7 - Term 376125 - 376163 5.4 318 144 Tu 1 . - CDS 376325 - 377485 1287 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - Prom 377530 - 377589 9.2 + Prom 377516 - 377575 11.3 319 145 Tu 1 . + CDS 377601 - 378506 687 ## COG1284 Uncharacterized conserved protein + Term 378536 - 378589 2.1 320 146 Tu 1 . - CDS 379556 - 380926 1504 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 380988 - 381047 5.7 - Term 381108 - 381153 10.9 321 147 Op 1 . - CDS 381159 - 382220 991 ## gi|256851145|ref|ZP_05556534.1| predicted protein 322 147 Op 2 . - CDS 382258 - 385989 4722 ## LJ0437 hypothetical protein - Prom 386125 - 386184 4.7 - Term 386068 - 386114 1.0 323 148 Tu 1 . - CDS 386188 - 388869 3424 ## LJ1313 hypothetical protein - Prom 388957 - 389016 12.7 + Prom 388633 - 388692 3.3 324 149 Tu 1 . + CDS 388855 - 389061 133 ## + Term 389142 - 389181 8.6 - Term 389127 - 389172 11.6 325 150 Op 1 . - CDS 389194 - 390384 1328 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 326 150 Op 2 . - CDS 390372 - 391616 842 ## COG1409 Predicted phosphohydrolases 327 150 Op 3 . - CDS 391636 - 392763 1309 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 392785 - 392844 5.7 328 151 Op 1 . - CDS 393235 - 393660 500 ## Ldb1015 hypothetical protein - Prom 393681 - 393740 9.0 329 151 Op 2 . - CDS 393760 - 394326 598 ## COG4474 Uncharacterized protein conserved in bacteria - Prom 394412 - 394471 4.7 + Prom 394343 - 394402 7.2 330 152 Op 1 7/0.000 + CDS 394598 - 395110 308 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 331 152 Op 2 . + CDS 395111 - 397447 2886 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 397484 - 397528 10.1 - Term 397595 - 397632 -0.7 332 153 Op 1 . - CDS 397643 - 398452 938 ## COG2746 Aminoglycoside N3'-acetyltransferase 333 153 Op 2 6/0.000 - CDS 398466 - 399119 689 ## COG0177 Predicted EndoIII-related endonuclease 334 153 Op 3 4/0.039 - CDS 399119 - 399754 656 ## COG3935 Putative primosome component and related proteins - Term 399773 - 399805 -0.9 335 153 Op 4 . - CDS 399822 - 401120 1500 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases - Term 401140 - 401179 1.5 336 154 Op 1 . - CDS 401198 - 401689 683 ## LCRIS_01170 hypothetical protein 337 154 Op 2 . - CDS 401673 - 404483 2366 ## COG1199 Rad3-related DNA helicases - Prom 404503 - 404562 2.8 338 155 Op 1 8/0.000 - CDS 404566 - 408126 3079 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 339 155 Op 2 . - CDS 408119 - 411574 2947 ## COG3857 ATP-dependent nuclease, subunit B - Prom 411717 - 411776 6.0 + Prom 411522 - 411581 6.4 340 156 Op 1 5/0.026 + CDS 411631 - 412545 717 ## COG1577 Mevalonate kinase 341 156 Op 2 5/0.026 + CDS 412545 - 413507 968 ## COG3407 Mevalonate pyrophosphate decarboxylase 342 156 Op 3 3/0.065 + CDS 413546 - 414634 955 ## COG1577 Mevalonate kinase 343 156 Op 4 . + CDS 414634 - 415656 1011 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 344 156 Op 5 . + CDS 415692 - 415787 92 ## 345 157 Op 1 . - CDS 416125 - 418470 1963 ## COG0144 tRNA and rRNA cytosine-C5-methylases 346 157 Op 2 . - CDS 418460 - 419182 478 ## lhv_1281 hypothetical protein - Prom 419212 - 419271 3.8 + Prom 419121 - 419180 7.5 347 158 Op 1 . + CDS 419269 - 419847 670 ## COG0681 Signal peptidase I 348 158 Op 2 . + CDS 419918 - 420103 224 ## LCRIS_01185 hypothetical protein + Term 420105 - 420164 8.1 - Term 420103 - 420144 6.5 349 159 Tu 1 . - CDS 420153 - 420770 501 ## COG1266 Predicted metal-dependent membrane protease - Prom 420790 - 420849 8.5 350 160 Op 1 . - CDS 420900 - 421658 527 ## gi|256851174|ref|ZP_05556563.1| predicted protein 351 160 Op 2 . - CDS 421673 - 422470 594 ## LBA1187 hypothetical protein 352 160 Op 3 . - CDS 422485 - 423297 594 ## gi|256851176|ref|ZP_05556565.1| predicted protein 353 160 Op 4 8/0.000 - CDS 423298 - 423999 190 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 354 160 Op 5 . - CDS 423999 - 424367 412 ## COG1725 Predicted transcriptional regulators - Prom 424597 - 424656 10.2 - Term 424578 - 424628 1.1 355 161 Op 1 . - CDS 424661 - 425899 1786 ## COG2195 Di- and tripeptidases 356 161 Op 2 9/0.000 - CDS 425916 - 426713 967 ## COG0327 Uncharacterized conserved protein 357 161 Op 3 5/0.026 - CDS 426706 - 427395 702 ## COG2384 Predicted SAM-dependent methyltransferase - Prom 427437 - 427496 6.6 - Term 427446 - 427498 9.6 358 162 Op 1 31/0.000 - CDS 427499 - 428593 1426 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 359 162 Op 2 . - CDS 428606 - 430393 1332 ## COG0358 DNA primase (bacterial type) - Term 430406 - 430442 -0.7 360 162 Op 3 19/0.000 - CDS 430445 - 432511 2533 ## COG0751 Glycyl-tRNA synthetase, beta subunit 361 162 Op 4 3/0.065 - CDS 432504 - 433421 1030 ## COG0752 Glycyl-tRNA synthetase, alpha subunit - Prom 433594 - 433653 4.2 - Term 433443 - 433476 4.0 362 163 Op 1 16/0.000 - CDS 433665 - 434420 527 ## COG1381 Recombinational DNA repair protein (RecF pathway) 363 163 Op 2 6/0.000 - CDS 434420 - 435328 975 ## COG1159 GTPase 364 163 Op 3 1/0.208 - CDS 435312 - 435734 544 ## COG0295 Cytidine deaminase 365 163 Op 4 17/0.000 - CDS 435734 - 436258 535 ## COG0319 Predicted metal-dependent hydrolase 366 163 Op 5 1/0.208 - CDS 436258 - 437211 996 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 367 163 Op 6 . - CDS 437232 - 437693 394 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 - Term 437713 - 437753 7.3 368 164 Op 1 . - CDS 437764 - 437940 292 ## PROTEIN SUPPORTED gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 369 164 Op 2 . - CDS 437903 - 438022 217 ## PROTEIN SUPPORTED gi|239632784|ref|ZP_04675815.1| SSU ribosomal protein S21P - Prom 438057 - 438116 8.4 + Prom 438002 - 438061 4.8 370 165 Tu 1 . + CDS 438086 - 438910 1032 ## COG1806 Uncharacterized protein conserved in bacteria + Term 438915 - 438962 5.1 - Term 438901 - 438948 -0.9 371 166 Tu 1 . - CDS 438961 - 439839 1087 ## COG1284 Uncharacterized conserved protein 372 167 Op 1 5/0.026 - CDS 439917 - 440447 672 ## COG0225 Peptide methionine sulfoxide reductase 373 167 Op 2 . - CDS 440447 - 440887 515 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase - Prom 440907 - 440966 1.9 - Term 440922 - 440959 2.0 374 168 Op 1 . - CDS 440970 - 441182 172 ## gi|256851196|ref|ZP_05556585.1| predicted protein 375 168 Op 2 . - CDS 441207 - 441545 261 ## TherJR_0530 transcriptional modulator of MazE/toxin, MazF 376 168 Op 3 . - CDS 441539 - 441787 237 ## gi|256851198|ref|ZP_05556587.1| predicted protein - Prom 441873 - 441932 9.9 - Term 441984 - 442020 -0.3 377 169 Tu 1 . - CDS 442030 - 442215 151 ## gi|260664316|ref|ZP_05865169.1| predicted protein - Prom 442336 - 442395 5.7 - Term 442513 - 442550 2.0 378 170 Tu 1 . - CDS 442561 - 444147 1646 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 444211 - 444270 5.7 - Term 444248 - 444279 1.1 379 171 Op 1 . - CDS 444297 - 444629 235 ## MGAS10270_Spy1407 putative cytoplasmic protein - Prom 444667 - 444726 4.4 380 171 Op 2 . - CDS 444742 - 444894 175 ## gi|297206068|ref|ZP_06923463.1| toxin-antitoxin system - Prom 445003 - 445062 8.4 - Term 445025 - 445074 10.9 381 172 Op 1 13/0.000 - CDS 445079 - 446911 2330 ## COG0173 Aspartyl-tRNA synthetase 382 172 Op 2 . - CDS 446929 - 448209 1554 ## COG0124 Histidyl-tRNA synthetase - Prom 448230 - 448289 3.7 - Term 448238 - 448279 2.4 383 173 Op 1 7/0.000 - CDS 448476 - 448916 580 ## COG1490 D-Tyr-tRNAtyr deacylase 384 173 Op 2 . - CDS 448916 - 451150 2647 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 385 173 Op 3 . - CDS 451172 - 451546 363 ## LGAS_0856 hypothetical protein 386 173 Op 4 . - CDS 451591 - 452535 1509 ## PROTEIN SUPPORTED gi|238854674|ref|ZP_04645004.1| ribosomal protein L11 methyltransferase - Prom 452568 - 452627 4.5 387 174 Tu 1 . + CDS 452601 - 453107 542 ## COG2606 Uncharacterized conserved protein + Term 453123 - 453185 11.2 - Term 453121 - 453160 3.6 388 175 Op 1 . - CDS 453183 - 454541 1467 ## COG2966 Uncharacterized conserved protein 389 175 Op 2 1/0.208 - CDS 454541 - 455359 616 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase - Prom 455458 - 455517 8.4 - Term 455429 - 455473 4.2 390 176 Op 1 6/0.000 - CDS 455533 - 457089 1947 ## COG3051 Citrate lyase, alpha subunit 391 176 Op 2 6/0.000 - CDS 457061 - 457975 1274 ## COG2301 Citrate lyase beta subunit 392 176 Op 3 5/0.026 - CDS 457976 - 458269 454 ## COG3052 Citrate lyase, gamma subunit 393 176 Op 4 . - CDS 458259 - 459314 1113 ## COG3053 Citrate lyase synthetase - Prom 459406 - 459465 6.9 + Prom 459317 - 459376 9.7 394 177 Tu 1 . + CDS 459508 - 460461 844 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain + Term 460468 - 460510 4.1 - Term 460335 - 460388 8.1 395 178 Op 1 . - CDS 460462 - 461253 780 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 396 178 Op 2 . - CDS 461300 - 462223 1332 ## COG0039 Malate/lactate dehydrogenases 397 178 Op 3 . - CDS 462252 - 463388 1423 ## COG2055 Malate/L-lactate dehydrogenases - Prom 463425 - 463484 7.2 - Term 463425 - 463469 5.7 398 179 Op 1 . - CDS 463486 - 464025 390 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 399 179 Op 2 . - CDS 464076 - 465263 1061 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 465296 - 465355 6.9 - Term 465325 - 465363 2.1 400 180 Tu 1 . - CDS 465386 - 466840 1668 ## COG0471 Di- and tricarboxylate transporters - Prom 466916 - 466975 9.1 - Term 467045 - 467094 8.3 401 181 Tu 1 . - CDS 467115 - 468536 1321 ## COG0471 Di- and tricarboxylate transporters - Prom 468625 - 468684 5.5 - Term 468652 - 468692 5.4 402 182 Op 1 . - CDS 468706 - 470097 2140 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 403 182 Op 2 . - CDS 470115 - 471518 1833 ## COG0114 Fumarase - Prom 471563 - 471622 6.2 - Term 471642 - 471677 5.3 404 183 Op 1 32/0.000 - CDS 471690 - 472391 944 ## COG2011 ABC-type metal ion transport system, permease component 405 183 Op 2 10/0.000 - CDS 472384 - 473442 1268 ## COG1135 ABC-type metal ion transport system, ATPase component 406 183 Op 3 . - CDS 473452 - 474303 1001 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen - Prom 474332 - 474391 2.6 + Prom 474564 - 474623 8.4 407 184 Tu 1 . + CDS 474696 - 475061 512 ## COG1970 Large-conductance mechanosensitive channel + Prom 475075 - 475134 9.1 408 185 Op 1 . + CDS 475176 - 475763 695 ## LGAS_0843 hypothetical protein 409 185 Op 2 . + CDS 475763 - 476626 723 ## LAF_1832 hypothetical protein + Term 476631 - 476680 7.4 - Term 476619 - 476668 7.4 410 186 Tu 1 . - CDS 476676 - 476822 118 ## - Prom 476860 - 476919 8.6 - Term 476914 - 476952 5.2 411 187 Tu 1 . - CDS 476959 - 477888 874 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 477915 - 477974 6.3 412 188 Op 1 . - CDS 477998 - 478414 311 ## LJ0167 hypothetical protein 413 188 Op 2 16/0.000 - CDS 478423 - 478926 524 ## COG0262 Dihydrofolate reductase 414 188 Op 3 . - CDS 478936 - 479892 939 ## COG0207 Thymidylate synthase - Prom 479997 - 480056 9.4 + Prom 479880 - 479939 6.6 415 189 Tu 1 . + CDS 479999 - 480865 1114 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Term 480892 - 480940 5.1 - Term 480887 - 480919 3.2 416 190 Op 1 3/0.065 - CDS 480926 - 482308 1632 ## COG1113 Gamma-aminobutyrate permease and related permeases 417 190 Op 2 . - CDS 482301 - 483701 1680 ## COG1113 Gamma-aminobutyrate permease and related permeases 418 191 Tu 1 . - CDS 483802 - 484503 472 ## COG1811 Uncharacterized membrane protein, possible Na+ channel or pump - Prom 484636 - 484695 8.4 + Prom 484537 - 484596 9.5 419 192 Tu 1 . + CDS 484677 - 486215 1392 ## SMU.739c hypothetical protein + Term 486375 - 486415 0.2 - TRNA 486355 - 486441 67.7 # Ser CGA 0 0 + Prom 486477 - 486536 6.9 420 193 Tu 1 . + CDS 486556 - 487125 251 ## LJ1417 hypothetical protein + Term 487134 - 487183 4.2 421 194 Tu 1 . - CDS 487634 - 488464 901 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 488528 - 488587 5.6 + Prom 488487 - 488546 7.5 422 195 Op 1 . + CDS 488581 - 489090 357 ## LAF_0389 hypothetical protein 423 195 Op 2 . + CDS 489154 - 491430 2183 ## COG0474 Cation transport ATPase + Term 491440 - 491487 12.1 - Term 491420 - 491477 7.8 424 196 Op 1 7/0.000 - CDS 491488 - 492015 748 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 425 196 Op 2 . - CDS 492033 - 494294 1936 ## COG0608 Single-stranded DNA-specific exonuclease 426 196 Op 3 . - CDS 494294 - 495004 862 ## COG3764 Sortase (surface protein transpeptidase) 427 196 Op 4 . - CDS 495006 - 496844 2085 ## COG0481 Membrane GTPase LepA - Prom 496866 - 496925 8.6 - Term 496971 - 497009 1.3 428 197 Op 1 31/0.000 - CDS 497021 - 498157 1704 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Term 498178 - 498219 -0.8 429 197 Op 2 29/0.000 - CDS 498229 - 500070 2462 ## COG0443 Molecular chaperone 430 197 Op 3 21/0.000 - CDS 500122 - 500703 724 ## COG0576 Molecular chaperone GrpE (heat shock protein) 431 197 Op 4 . - CDS 500717 - 501760 975 ## COG1420 Transcriptional regulator of heat shock gene - Prom 501804 - 501863 5.2 432 198 Op 1 12/0.000 - CDS 501880 - 502818 564 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 - Prom 502905 - 502964 5.7 433 198 Op 2 26/0.000 - CDS 502987 - 503724 702 ## COG0130 Pseudouridine synthase - Term 503732 - 503757 -0.5 434 198 Op 3 32/0.000 - CDS 503762 - 504118 421 ## COG0858 Ribosome-binding factor A 435 198 Op 4 . - CDS 504130 - 506829 3208 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 436 198 Op 5 . - CDS 506834 - 507145 482 ## PROTEIN SUPPORTED gi|227526109|ref|ZP_03956158.1| ribosomal protein L7/L12 437 198 Op 6 22/0.000 - CDS 507146 - 507394 323 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 438 198 Op 7 32/0.000 - CDS 507452 - 508558 723 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 439 198 Op 8 4/0.039 - CDS 508579 - 509088 493 ## COG0779 Uncharacterized protein conserved in bacteria 440 198 Op 9 5/0.026 - CDS 509151 - 513470 3705 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 441 198 Op 10 7/0.000 - CDS 513480 - 515177 2100 ## COG0442 Prolyl-tRNA synthetase 442 198 Op 11 12/0.000 - CDS 515197 - 516450 904 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 443 198 Op 12 32/0.000 - CDS 516453 - 517259 905 ## COG0575 CDP-diglyceride synthetase 444 198 Op 13 19/0.000 - CDS 517271 - 517984 673 ## COG0020 Undecaprenyl pyrophosphate synthase 445 198 Op 14 33/0.000 - CDS 517988 - 518545 921 ## COG0233 Ribosome recycling factor 446 198 Op 15 24/0.000 - CDS 518545 - 519270 945 ## COG0528 Uridylate kinase - Prom 519329 - 519388 6.7 - Term 519341 - 519397 5.1 447 199 Op 1 38/0.000 - CDS 519398 - 520273 581 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 448 199 Op 2 . - CDS 520307 - 521089 1328 ## PROTEIN SUPPORTED gi|227526097|ref|ZP_03956146.1| 30S ribosomal protein S2 - Prom 521180 - 521239 3.9 449 200 Tu 1 . - CDS 521259 - 522269 507 ## COG4123 Predicted O-methyltransferase - Prom 522428 - 522487 5.2 + Prom 522220 - 522279 6.0 450 201 Tu 1 . + CDS 522333 - 522947 776 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 522951 - 522984 3.1 - Term 522937 - 522970 3.1 451 202 Op 1 35/0.000 - CDS 522977 - 524761 235 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 452 202 Op 2 . - CDS 524754 - 526508 179 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Prom 526528 - 526587 5.5 - Term 526537 - 526571 3.1 453 203 Op 1 . - CDS 526596 - 526817 378 ## COG3763 Uncharacterized protein conserved in bacteria 454 203 Op 2 . - CDS 526835 - 527083 288 ## LCRIS_01293 hypothetical UPF0291 protein - Prom 527113 - 527172 8.7 + Prom 527138 - 527197 6.5 455 204 Tu 1 . + CDS 527222 - 527857 692 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 527947 - 527980 1.4 - Term 528179 - 528215 0.2 456 205 Tu 1 . - CDS 528266 - 529267 930 ## COG1609 Transcriptional regulators - Prom 529297 - 529356 7.8 - Term 529359 - 529418 7.1 457 206 Op 1 . - CDS 529480 - 531660 1086 ## COG3345 Alpha-galactosidase 458 206 Op 2 . - CDS 531674 - 533086 1452 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 533212 - 533271 9.0 - Term 533291 - 533364 9.0 459 207 Tu 1 . - CDS 533372 - 535318 2468 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 535490 - 535549 7.6 + Prom 535471 - 535530 9.4 460 208 Op 1 5/0.026 + CDS 535558 - 537009 1786 ## COG1621 Beta-fructosidases (levanase/invertase) 461 208 Op 2 . + CDS 537009 - 537989 774 ## COG1609 Transcriptional regulators + Term 537995 - 538027 4.2 - Term 537983 - 538015 4.2 462 209 Tu 1 . - CDS 538020 - 538667 785 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) - Prom 538709 - 538768 7.0 - Term 539067 - 539100 4.0 463 210 Op 1 2/0.117 - CDS 539106 - 539438 424 ## COG5294 Uncharacterized protein conserved in bacteria 464 210 Op 2 3/0.065 - CDS 539435 - 540103 270 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 465 210 Op 3 . - CDS 540118 - 542097 1526 ## COG4652 Uncharacterized protein conserved in bacteria - Prom 542151 - 542210 11.2 - Term 542195 - 542242 8.1 466 211 Op 1 33/0.000 - CDS 542251 - 542598 578 ## PROTEIN SUPPORTED gi|227526078|ref|ZP_03956127.1| 50S ribosomal protein L19 467 211 Op 2 30/0.000 - CDS 542705 - 543436 1063 ## COG0336 tRNA-(guanine-N1)-methyltransferase 468 211 Op 3 12/0.000 - CDS 543426 - 543938 614 ## COG0806 RimM protein, required for 16S rRNA processing - Term 543954 - 543995 6.7 469 211 Op 4 23/0.000 - CDS 544009 - 544281 463 ## PROTEIN SUPPORTED gi|227526075|ref|ZP_03956124.1| ribosomal protein S16 - Prom 544309 - 544368 7.5 470 211 Op 5 8/0.000 - CDS 544371 - 545798 1919 ## COG0541 Signal recognition particle GTPase 471 211 Op 6 . - CDS 545803 - 546138 398 ## COG2739 Uncharacterized protein conserved in bacteria - Term 546162 - 546193 1.0 472 211 Op 7 . - CDS 546210 - 546443 278 ## gi|282933263|ref|ZP_06338650.1| hypothetical protein HMPREF0886_2732 - Prom 546475 - 546534 8.2 - Term 546519 - 546564 7.6 473 212 Op 1 35/0.000 - CDS 546566 - 548143 1247 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 474 212 Op 2 . - CDS 548149 - 549726 198 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 475 212 Op 3 . - CDS 549740 - 550558 445 ## LCRIS_00042 transcriptional regulator, XRE family 476 212 Op 4 . - CDS 550572 - 553139 1533 ## COG0515 Serine/threonine protein kinase - Prom 553333 - 553392 12.9 - Term 553550 - 553603 10.3 477 213 Op 1 . - CDS 553609 - 555033 1630 ## COG4690 Dipeptidase 478 213 Op 2 10/0.000 - CDS 555044 - 556348 562 ## PROTEIN SUPPORTED gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 479 213 Op 3 6/0.000 - CDS 556348 - 559917 3513 ## COG1196 Chromosome segregation ATPases 480 213 Op 4 . - CDS 559927 - 560619 716 ## COG0571 dsRNA-specific ribonuclease - Prom 560639 - 560698 4.2 - Term 560660 - 560686 -0.6 481 214 Tu 1 3/0.065 - CDS 560704 - 562221 1725 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Term 562575 - 562619 10.2 482 215 Tu 1 . - CDS 562651 - 564423 2083 ## COG0747 ABC-type dipeptide transport system, periplasmic component 483 216 Op 1 49/0.000 - CDS 564763 - 565677 1155 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 484 216 Op 2 6/0.000 - CDS 565692 - 566651 1116 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 485 216 Op 3 44/0.000 - CDS 566653 - 567624 738 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 486 216 Op 4 . - CDS 567625 - 568602 1260 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component - Prom 568664 - 568723 6.6 487 217 Op 1 3/0.065 - CDS 568756 - 568995 420 ## COG0236 Acyl carrier protein 488 217 Op 2 . - CDS 569053 - 570057 1252 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 489 217 Op 3 4/0.039 - CDS 570066 - 572090 2200 ## COG1200 RecG-like helicase 490 217 Op 4 9/0.000 - CDS 572095 - 573711 1978 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 491 217 Op 5 . - CDS 573771 - 574133 510 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 574166 - 574225 7.1 + Prom 574217 - 574276 5.7 492 218 Tu 1 . + CDS 574310 - 574495 313 ## PROTEIN SUPPORTED gi|227526050|ref|ZP_03956099.1| 50S ribosomal protein L28 + Term 574523 - 574568 13.2 - Term 574518 - 574549 3.4 493 219 Op 1 6/0.000 - CDS 574566 - 575240 696 ## COG1564 Thiamine pyrophosphokinase 494 219 Op 2 10/0.000 - CDS 575227 - 575889 702 ## COG0036 Pentose-5-phosphate-3-epimerase 495 219 Op 3 7/0.000 - CDS 575923 - 576810 814 ## COG1162 Predicted GTPases 496 219 Op 4 17/0.000 - CDS 576807 - 578801 2120 ## COG0515 Serine/threonine protein kinase 497 219 Op 5 3/0.065 - CDS 578798 - 579547 489 ## COG0631 Serine/threonine protein phosphatase 498 219 Op 6 20/0.000 - CDS 579553 - 580866 1129 ## COG0144 tRNA and rRNA cytosine-C5-methylases 499 219 Op 7 4/0.039 - CDS 580859 - 581803 1004 ## COG0223 Methionyl-tRNA formyltransferase 500 219 Op 8 3/0.065 - CDS 581820 - 584213 2088 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Term 584223 - 584260 5.1 501 220 Op 1 25/0.000 - CDS 584268 - 584486 340 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 502 220 Op 2 . - CDS 584490 - 585104 790 ## COG0194 Guanylate kinase - Prom 585127 - 585186 4.1 + Prom 585202 - 585261 8.8 503 221 Tu 1 . + CDS 585317 - 585622 409 ## gi|256851323|ref|ZP_05556712.1| predicted protein + Term 585706 - 585746 -0.2 504 222 Op 1 . - CDS 585677 - 587362 1855 ## COG0497 ATPase involved in DNA repair 505 222 Op 2 3/0.065 - CDS 587376 - 588188 870 ## COG1189 Predicted rRNA methylase 506 222 Op 3 22/0.000 - CDS 588188 - 589054 1034 ## COG0142 Geranylgeranyl pyrophosphate synthase 507 222 Op 4 14/0.000 - CDS 589056 - 589298 388 ## COG1722 Exonuclease VII small subunit 508 222 Op 5 7/0.000 - CDS 589288 - 590649 1414 ## COG1570 Exonuclease VII, large subunit 509 222 Op 6 4/0.039 - CDS 590636 - 591487 922 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Term 591502 - 591527 -0.5 510 222 Op 7 10/0.000 - CDS 591534 - 591935 436 ## COG0781 Transcription termination factor 511 222 Op 8 4/0.039 - CDS 591935 - 592381 596 ## COG1302 Uncharacterized protein conserved in bacteria 512 222 Op 9 10/0.000 - CDS 592406 - 592975 686 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 513 222 Op 10 . - CDS 593044 - 594150 1247 ## COG0006 Xaa-Pro aminopeptidase - Term 594163 - 594201 6.1 514 223 Op 1 32/0.000 - CDS 594216 - 594515 511 ## PROTEIN SUPPORTED gi|227526027|ref|ZP_03956076.1| 50S ribosomal protein L27 515 223 Op 2 . - CDS 594534 - 594896 603 ## PROTEIN SUPPORTED gi|227526026|ref|ZP_03956075.1| ribosomal protein L21 - Prom 594954 - 595013 5.7 516 224 Op 1 . - CDS 595024 - 595599 358 ## COG1814 Uncharacterized membrane protein 517 224 Op 2 6/0.000 - CDS 595698 - 597101 1736 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 518 224 Op 3 19/0.000 - CDS 597101 - 597544 393 ## COG0822 NifU homolog involved in Fe-S cluster formation 519 224 Op 4 24/0.000 - CDS 597541 - 598734 866 ## COG0520 Selenocysteine lyase 520 224 Op 5 41/0.000 - CDS 598724 - 599953 1359 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 521 224 Op 6 . - CDS 599965 - 600756 1091 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component - Prom 600966 - 601025 10.2 - Term 601073 - 601111 -0.9 522 225 Tu 1 . - CDS 601156 - 601296 56 ## - Prom 601327 - 601386 9.2 523 226 Op 1 . - CDS 601406 - 601585 180 ## gi|256851341|ref|ZP_05556730.1| predicted protein 524 226 Op 2 . - CDS 601626 - 601919 210 ## gi|256851342|ref|ZP_05556731.1| predicted protein 525 226 Op 3 . - CDS 601963 - 602169 266 ## gi|256851343|ref|ZP_05556732.1| predicted protein - Prom 602254 - 602313 6.7 - Term 602285 - 602319 2.2 526 227 Op 1 . - CDS 602330 - 602512 269 ## gi|282933208|ref|ZP_06338595.1| glycyl-tRNA synthetase alpha subunit 527 227 Op 2 . - CDS 602552 - 602689 146 ## - Prom 602728 - 602787 6.3 - Term 602720 - 602761 -0.9 528 228 Tu 1 . - CDS 602918 - 603151 326 ## FI9785_830 hypothetical protein - Prom 603272 - 603331 5.0 529 229 Op 1 . - CDS 603335 - 603577 300 ## FI9785_830 hypothetical protein 530 229 Op 2 . - CDS 603620 - 603808 246 ## gi|256851347|ref|ZP_05556736.1| predicted protein - Prom 603928 - 603987 10.5 - Term 604455 - 604505 10.8 531 230 Op 1 7/0.000 - CDS 604517 - 605704 1523 ## COG0282 Acetate kinase 532 230 Op 2 . - CDS 605737 - 606735 1169 ## COG0827 Adenine-specific DNA methylase - Prom 606757 - 606816 6.8 533 231 Op 1 . - CDS 606936 - 607439 461 ## LGAS_1271 hypothetical protein 534 231 Op 2 . - CDS 607417 - 607629 195 ## gi|256851412|ref|ZP_05556801.1| predicted protein 535 231 Op 3 . - CDS 607616 - 608047 280 ## LGAS_1272 hypothetical protein 536 231 Op 4 . - CDS 608025 - 608354 468 ## LGAS_1273 competence protein ComGC 537 231 Op 5 24/0.000 - CDS 608365 - 609288 813 ## COG1459 Type II secretory pathway, component PulF 538 231 Op 6 . - CDS 609332 - 610315 748 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB - Prom 610346 - 610405 7.3 - Term 610363 - 610399 6.8 539 232 Tu 1 1/0.208 - CDS 610415 - 612028 1760 ## COG0531 Amino acid transporters - Prom 612142 - 612201 5.4 - Term 612182 - 612230 9.1 540 233 Tu 1 . - CDS 612249 - 613127 1092 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 613156 - 613215 6.2 + Prom 613096 - 613155 7.8 541 234 Op 1 . + CDS 613205 - 613726 583 ## LBUL_0608 integral membrane protein 542 234 Op 2 . + CDS 613803 - 614531 1187 ## COG0217 Uncharacterized conserved protein + Term 614546 - 614583 7.3 - Term 614534 - 614571 7.3 543 235 Op 1 . - CDS 614579 - 615046 582 ## COG0394 Protein-tyrosine-phosphatase 544 235 Op 2 . - CDS 615048 - 615755 521 ## LCRIS_00726 hypothetical protein 545 235 Op 3 11/0.000 - CDS 615756 - 616091 443 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 546 235 Op 4 . - CDS 616088 - 616471 243 ## COG0239 Integral membrane protein possibly involved in chromosome condensation - Prom 616492 - 616551 3.2 - Term 616514 - 616566 7.5 547 236 Op 1 2/0.117 - CDS 616575 - 618482 2168 ## COG2217 Cation transport ATPase 548 236 Op 2 1/0.208 - CDS 618482 - 618850 412 ## COG4633 Uncharacterized protein conserved in bacteria 549 236 Op 3 . - CDS 618865 - 619338 530 ## COG3682 Predicted transcriptional regulator 550 236 Op 4 4/0.039 - CDS 619386 - 620207 807 ## COG0561 Predicted hydrolases of the HAD superfamily 551 236 Op 5 . - CDS 620228 - 621037 958 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 621075 - 621134 10.5 - Term 621084 - 621112 -1.0 552 237 Op 1 6/0.000 - CDS 621137 - 622489 1825 ## COG1109 Phosphomannomutase 553 237 Op 2 7/0.000 - CDS 622508 - 623476 1205 ## COG4856 Uncharacterized protein conserved in bacteria 554 237 Op 3 . - CDS 623473 - 624315 731 ## COG1624 Uncharacterized conserved protein 555 237 Op 4 25/0.000 - CDS 624352 - 625425 952 ## COG0687 Spermidine/putrescine-binding periplasmic protein 556 237 Op 5 36/0.000 - CDS 625422 - 626231 929 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 557 237 Op 6 30/0.000 - CDS 626228 - 627040 675 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 558 237 Op 7 3/0.065 - CDS 627030 - 628130 1297 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 559 237 Op 8 . - CDS 628127 - 628906 1085 ## COG0812 UDP-N-acetylmuramate dehydrogenase - Prom 629127 - 629186 6.3 + Prom 629060 - 629119 7.9 560 238 Tu 1 . + CDS 629143 - 629676 572 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 629685 - 629729 6.2 - Term 629668 - 629721 11.6 561 239 Op 1 . - CDS 629722 - 630198 621 ## COG0802 Predicted ATPase or kinase 562 239 Op 2 . - CDS 630198 - 631175 1156 ## COG0280 Phosphotransacetylase 563 239 Op 3 . - CDS 631187 - 631876 573 ## COG0692 Uracil DNA glycosylase - Prom 631930 - 631989 6.0 + Prom 631866 - 631925 4.0 564 240 Tu 1 . + CDS 631969 - 632484 555 ## lhv_0746 hypothetical protein - Term 632261 - 632292 1.0 565 241 Op 1 10/0.000 - CDS 632488 - 632943 540 ## COG0691 tmRNA-binding protein 566 241 Op 2 . - CDS 632956 - 635280 1375 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 - Term 635297 - 635334 4.1 567 241 Op 3 . - CDS 635341 - 635559 341 ## LCRIS_00448 preprotein translocase - Prom 635608 - 635667 6.7 - Term 635652 - 635705 11.4 568 242 Op 1 . - CDS 635719 - 637017 2285 ## COG0148 Enolase 569 242 Op 2 13/0.000 - CDS 637077 - 637832 852 ## COG0149 Triosephosphate isomerase 570 242 Op 3 26/0.000 - CDS 637847 - 639058 1513 ## COG0126 3-phosphoglycerate kinase - Term 639079 - 639122 9.9 571 243 Op 1 5/0.026 - CDS 639164 - 640180 1290 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 572 243 Op 2 . - CDS 640238 - 641269 888 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain + TRNA 641512 - 641583 42.4 # Arg CCG 0 0 573 244 Tu 1 . - CDS 641622 - 641948 352 ## PROTEIN SUPPORTED gi|227521446|ref|ZP_03951495.1| 30S ribosomal protein S9 - Prom 641984 - 642043 3.6 - Term 642015 - 642044 1.4 574 245 Tu 1 . - CDS 642049 - 643644 1850 ## COG0531 Amino acid transporters - Prom 643822 - 643881 8.9 + Prom 643630 - 643689 6.5 575 246 Op 1 . + CDS 643813 - 645237 933 ## COG0531 Amino acid transporters + Term 645244 - 645271 0.1 576 246 Op 2 . + CDS 645325 - 645792 487 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 645802 - 645844 6.1 + Prom 645803 - 645862 2.2 577 246 Op 3 . + CDS 645886 - 646467 773 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Term 646485 - 646535 7.0 - Term 646480 - 646514 6.0 578 247 Tu 1 . - CDS 646519 - 647712 1047 ## Ldb1448 putative permease - Prom 647738 - 647797 9.3 - Term 647792 - 647836 7.6 579 248 Op 1 . - CDS 647860 - 648852 1177 ## COG1052 Lactate dehydrogenase and related dehydrogenases 580 248 Op 2 . - CDS 648918 - 650132 772 ## gi|256851458|ref|ZP_05556847.1| predicted protein - Prom 650183 - 650242 6.1 - Term 650232 - 650270 5.1 581 249 Op 1 12/0.000 - CDS 650273 - 651211 1232 ## COG1481 Uncharacterized protein conserved in bacteria 582 249 Op 2 12/0.000 - CDS 651204 - 652241 933 ## COG0391 Uncharacterized conserved protein 583 249 Op 3 . - CDS 652251 - 653126 873 ## COG1660 Predicted P-loop-containing kinase - Prom 653162 - 653221 7.8 - Term 653165 - 653215 5.4 584 250 Op 1 7/0.000 - CDS 653223 - 656063 2928 ## COG0178 Excinuclease ATPase subunit 585 250 Op 2 . - CDS 656050 - 658095 2071 ## COG0556 Helicase subunit of the DNA excision repair complex - Prom 658128 - 658187 5.4 - Term 658102 - 658142 -0.8 586 250 Op 3 1/0.208 - CDS 658193 - 659917 2081 ## COG1109 Phosphomannomutase - Prom 659966 - 660025 7.1 - Term 660003 - 660031 -1.0 587 251 Tu 1 . - CDS 660043 - 660969 573 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 588 252 Op 1 . - CDS 661039 - 662061 1262 ## COG0240 Glycerol-3-phosphate dehydrogenase 589 252 Op 2 10/0.000 - CDS 662064 - 662828 747 ## COG0682 Prolipoprotein diacylglyceryltransferase - Prom 662856 - 662915 2.6 590 252 Op 3 . - CDS 662917 - 663858 1170 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 591 252 Op 4 . - CDS 663870 - 664175 382 ## gi|238854883|ref|ZP_04645213.1| hypothetical protein LACJE0001_0851 592 252 Op 5 6/0.000 - CDS 664188 - 665186 1305 ## COG1186 Protein chain release factor B - Prom 665248 - 665307 3.8 - Term 665317 - 665348 2.5 593 252 Op 6 7/0.000 - CDS 665361 - 667763 3057 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 667803 - 667862 11.9 - Term 667841 - 667881 7.1 594 253 Op 1 6/0.000 - CDS 667902 - 668465 791 ## PROTEIN SUPPORTED gi|116629960|ref|YP_815132.1| ribosome-associated protein Y 595 253 Op 2 6/0.000 - CDS 668527 - 669204 334 ## COG1040 Predicted amidophosphoribosyltransferases 596 253 Op 3 . - CDS 669201 - 670481 757 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) - Prom 670540 - 670599 8.1 + Prom 670377 - 670436 4.8 597 254 Tu 1 . + CDS 670529 - 671191 666 ## COG1739 Uncharacterized conserved protein + Term 671197 - 671225 2.3 - Term 671174 - 671225 12.0 598 255 Op 1 . - CDS 671229 - 672398 1212 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 672426 - 672485 7.6 - Term 672453 - 672502 8.5 599 255 Op 2 . - CDS 672504 - 674132 2183 ## COG1418 Predicted HD superfamily hydrolase - Prom 674169 - 674228 10.1 - Term 674203 - 674239 5.0 600 256 Tu 1 . - CDS 674259 - 675341 1104 ## COG0468 RecA/RadA recombinase - Prom 675366 - 675425 7.8 601 257 Op 1 5/0.026 - CDS 675517 - 676080 278 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 602 257 Op 2 1/0.208 - CDS 676088 - 677146 1293 ## COG1426 Uncharacterized protein conserved in bacteria 603 257 Op 3 4/0.039 - CDS 677199 - 677927 664 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 604 257 Op 4 14/0.000 - CDS 677938 - 679173 1066 ## COG0612 Predicted Zn-dependent peptidases 605 257 Op 5 . - CDS 679170 - 680381 1221 ## COG0612 Predicted Zn-dependent peptidases 606 257 Op 6 . - CDS 680371 - 682758 2054 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Prom 682821 - 682880 2.5 607 258 Op 1 . - CDS 682991 - 683173 277 ## LGAS_1345 hypothetical protein 608 258 Op 2 . - CDS 683175 - 683732 758 ## COG0219 Predicted rRNA methylase (SpoU class) 609 258 Op 3 . - CDS 683725 - 684930 1173 ## COG0628 Predicted permease - Prom 684950 - 685009 5.4 - Term 684966 - 685001 3.5 610 259 Tu 1 . - CDS 685011 - 687755 2616 ## COG0474 Cation transport ATPase - Prom 687984 - 688043 7.8 + Prom 687773 - 687832 6.8 611 260 Op 1 . + CDS 687861 - 688883 1030 ## COG2706 3-carboxymuconate cyclase 612 260 Op 2 . + CDS 688894 - 689724 923 ## COG1968 Uncharacterized bacitracin resistance protein + Term 689930 - 689977 10.0 - Term 689966 - 690001 4.4 613 261 Tu 1 . - CDS 690020 - 694768 7073 ## LGAS_0143 adhesion exoprotein - Prom 694975 - 695034 5.8 - Term 695074 - 695129 12.2 614 262 Tu 1 . - CDS 695135 - 706051 12410 ## LJ0621 hypothetical protein - Prom 706238 - 706297 12.5 - Term 706229 - 706290 5.2 615 263 Tu 1 . - CDS 706320 - 706751 371 ## gi|256851496|ref|ZP_05556885.1| predicted protein - Prom 706775 - 706834 5.7 616 264 Op 1 7/0.000 - CDS 706854 - 707747 287 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 617 264 Op 2 6/0.000 - CDS 707748 - 708536 708 ## COG0061 Predicted sugar kinase 618 264 Op 3 . - CDS 708536 - 709162 815 ## COG2357 Uncharacterized protein conserved in bacteria - Prom 709221 - 709280 6.1 + Prom 709131 - 709190 5.6 619 265 Op 1 . + CDS 709275 - 709895 588 ## lhv_0692 hypothetical protein 620 265 Op 2 . + CDS 709938 - 710537 511 ## LCRIS_00656 dithiol-disulfide isomerase - Term 710425 - 710462 1.1 621 266 Tu 1 . - CDS 710518 - 711114 519 ## COG4469 Competence protein - Term 711134 - 711167 4.0 622 267 Op 1 . - CDS 711174 - 711776 512 ## lhv_0689 adaptor protein - Prom 711872 - 711931 6.1 - Term 711899 - 711928 1.4 623 267 Op 2 . - CDS 711935 - 712333 426 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 712461 - 712520 13.8 - Term 712502 - 712541 6.3 624 268 Op 1 25/0.000 - CDS 712546 - 714282 2421 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 625 268 Op 2 . - CDS 714282 - 714548 477 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 714575 - 714634 3.5 626 269 Tu 1 . - CDS 714654 - 714836 286 ## LCRIS_00650 hypothetical protein - Prom 714883 - 714942 6.6 + Prom 714911 - 714970 4.8 627 270 Op 1 . + CDS 714996 - 717179 1605 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 717186 - 717212 -1.0 + Prom 717184 - 717243 5.7 628 270 Op 2 . + CDS 717277 - 717555 415 ## LJ0814 hypothetical protein - Term 717564 - 717615 1.1 629 271 Op 1 . - CDS 717625 - 718635 1118 ## COG2017 Galactose mutarotase and related enzymes 630 271 Op 2 4/0.039 - CDS 718666 - 720066 1032 ## COG4468 Galactose-1-phosphate uridyltransferase 631 271 Op 3 2/0.117 - CDS 720123 - 721118 1252 ## COG1087 UDP-glucose 4-epimerase 632 271 Op 4 . - CDS 721141 - 722307 1417 ## COG0153 Galactokinase - Prom 722335 - 722394 5.9 - Term 722319 - 722378 16.1 633 272 Tu 1 . - CDS 722461 - 723018 440 ## gi|256851514|ref|ZP_05556903.1| predicted protein - Prom 723043 - 723102 8.1 - Term 723081 - 723135 14.2 634 273 Op 1 . - CDS 723136 - 724707 2260 ## COG4108 Peptide chain release factor RF-3 635 273 Op 2 . - CDS 724707 - 725570 995 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 725623 - 725682 6.4 + Prom 725582 - 725641 7.2 636 274 Tu 1 . + CDS 725690 - 726151 267 ## LCRIS_00638 hypothetical protein + Term 726161 - 726203 1.0 637 275 Op 1 . - CDS 726154 - 726630 516 ## lhv_0679 hypothetical protein 638 275 Op 2 . - CDS 726641 - 727456 792 ## COG2137 Uncharacterized protein conserved in bacteria - Prom 727672 - 727731 10.6 + Prom 727428 - 727487 6.1 639 276 Tu 1 . + CDS 727597 - 728973 1435 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Term 728987 - 729028 7.5 - Term 729209 - 729264 -1.0 640 277 Op 1 2/0.117 - CDS 729387 - 730544 1344 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase 641 277 Op 2 1/0.208 - CDS 730547 - 731758 1076 ## COG1257 Hydroxymethylglutaryl-CoA reductase 642 277 Op 3 . - CDS 731776 - 732921 1474 ## COG0183 Acetyl-CoA acetyltransferase 643 277 Op 4 . - CDS 732963 - 733919 1024 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 734029 - 734088 8.3 + Prom 733999 - 734058 7.4 644 278 Tu 1 . + CDS 734088 - 734372 168 ## LBA0629 hypothetical protein + Term 734378 - 734407 1.4 - Term 734366 - 734395 1.4 645 279 Op 1 . - CDS 734409 - 735311 1178 ## COG1210 UDP-glucose pyrophosphorylase 646 279 Op 2 2/0.117 - CDS 735379 - 736239 722 ## COG1295 Predicted membrane protein 647 279 Op 3 . - CDS 736232 - 737059 1136 ## COG0024 Methionine aminopeptidase - Prom 737141 - 737200 10.5 + Prom 737051 - 737110 9.6 648 280 Tu 1 . + CDS 737267 - 737713 626 ## COG0716 Flavodoxins 649 281 Tu 1 . - CDS 737794 - 738354 151 ## lhv_1083 putative transposase + Prom 738668 - 738727 5.2 650 282 Tu 1 . + CDS 738757 - 739182 292 ## LBA0621 putative cellwall teichoic acid glycosylation protein - Term 739149 - 739200 4.4 651 283 Op 1 . - CDS 739212 - 739646 517 ## COG2153 Predicted acyltransferase 652 283 Op 2 . - CDS 739649 - 740089 411 ## COG1846 Transcriptional regulators - Prom 740185 - 740244 6.2 - Term 740166 - 740210 9.1 653 284 Tu 1 . - CDS 740269 - 741411 1638 ## COG0381 UDP-N-acetylglucosamine 2-epimerase - Prom 741611 - 741670 8.1 + Prom 741391 - 741450 4.5 654 285 Op 1 . + CDS 741480 - 741659 127 ## gi|256851533|ref|ZP_05556922.1| predicted protein + Prom 741672 - 741731 6.0 655 285 Op 2 . + CDS 741826 - 742122 401 ## LGAS_1868 hypothetical protein + Term 742130 - 742181 16.2 - TRNA 742183 - 742256 75.2 # Arg CCT 0 0 - Term 742116 - 742167 16.2 656 286 Op 1 . - CDS 742306 - 743580 1078 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Term 743586 - 743623 1.3 657 286 Op 2 . - CDS 743646 - 744872 1460 ## COG0513 Superfamily II DNA and RNA helicases 658 286 Op 3 . - CDS 744872 - 745585 700 ## FI9785_664 hypothetical protein - Prom 745657 - 745716 7.1 + Prom 745614 - 745673 6.4 659 287 Tu 1 . + CDS 745704 - 746999 1320 ## COG0531 Amino acid transporters + Term 747005 - 747051 3.5 - Term 746993 - 747039 7.3 660 288 Op 1 . - CDS 747048 - 747611 743 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase - Prom 747637 - 747696 4.4 - Term 747662 - 747691 -0.2 661 288 Op 2 . - CDS 747703 - 749043 1524 ## COG1253 Hemolysins and related proteins containing CBS domains 662 288 Op 3 . - CDS 749110 - 749766 643 ## COG0778 Nitroreductase - Prom 749797 - 749856 7.1 - Term 749841 - 749876 7.1 663 289 Tu 1 . - CDS 749891 - 752260 2975 ## COG3957 Phosphoketolase - Prom 752298 - 752357 7.0 664 290 Op 1 . - CDS 752398 - 753123 671 ## COG2188 Transcriptional regulators 665 290 Op 2 . - CDS 753139 - 754062 984 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 754085 - 754144 9.6 - Term 754094 - 754138 8.0 666 291 Op 1 . - CDS 754154 - 754846 720 ## COG0120 Ribose 5-phosphate isomerase 667 291 Op 2 . - CDS 754846 - 755769 1034 ## COG0524 Sugar kinases, ribokinase family 668 291 Op 3 . - CDS 755836 - 756642 669 ## COG1085 Galactose-1-phosphate uridylyltransferase - Prom 756715 - 756774 5.9 + Prom 756572 - 756631 5.5 669 292 Tu 1 . + CDS 756867 - 758162 1470 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 758199 - 758231 2.5 - Term 758178 - 758226 5.9 670 293 Op 1 21/0.000 - CDS 758238 - 758861 681 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 671 293 Op 2 1/0.208 - CDS 758874 - 759923 962 ## COG0306 Phosphate/sulphate permeases 672 293 Op 3 17/0.000 - CDS 760002 - 760664 753 ## COG0765 ABC-type amino acid transport system, permease component 673 293 Op 4 31/0.000 - CDS 760680 - 761318 453 ## COG0765 ABC-type amino acid transport system, permease component 674 293 Op 5 16/0.000 - CDS 761315 - 762142 988 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 675 293 Op 6 . - CDS 762152 - 762928 292 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 762948 - 763007 2.6 - Term 762952 - 762987 1.1 676 294 Op 1 35/0.000 - CDS 763010 - 763825 229 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 677 294 Op 2 35/0.000 - CDS 763859 - 764767 663 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 678 294 Op 3 . - CDS 764767 - 766503 263 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 679 294 Op 4 . - CDS 766500 - 766943 418 ## FI9785_616 putative transcriptional regulator - Prom 766973 - 767032 6.4 + Prom 767006 - 767065 6.9 680 295 Tu 1 . + CDS 767086 - 767721 919 ## COG0572 Uridine kinase + Term 767736 - 767773 3.1 - Term 767715 - 767767 13.1 681 296 Op 1 4/0.039 - CDS 767774 - 768733 979 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 682 296 Op 2 . - CDS 768750 - 770993 2660 ## COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - Prom 771102 - 771161 9.2 + Prom 770920 - 770979 10.8 683 297 Op 1 6/0.000 + CDS 771170 - 772381 830 ## COG0477 Permeases of the major facilitator superfamily + Prom 772383 - 772442 5.4 684 297 Op 2 . + CDS 772474 - 773913 1496 ## COG0531 Amino acid transporters + Term 773930 - 773969 6.2 - Term 773906 - 773964 11.2 685 298 Tu 1 . - CDS 773976 - 775454 1445 ## COG0531 Amino acid transporters - Prom 775495 - 775554 7.3 - Term 775527 - 775562 2.7 686 299 Op 1 32/0.000 - CDS 775579 - 776298 1052 ## COG0704 Phosphate uptake regulator 687 299 Op 2 41/0.000 - CDS 776316 - 777068 350 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 688 299 Op 3 38/0.000 - CDS 777083 - 777964 1081 ## COG0581 ABC-type phosphate transport system, permease component 689 299 Op 4 39/0.000 - CDS 777968 - 778867 752 ## COG0573 ABC-type phosphate transport system, permease component 690 299 Op 5 . - CDS 778872 - 779738 989 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 779778 - 779837 8.6 + Prom 779733 - 779792 3.9 691 300 Tu 1 . + CDS 779853 - 780569 521 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 780662 - 780702 1.1 + Prom 780591 - 780650 4.7 692 301 Tu 1 . + CDS 780755 - 782017 1076 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 782076 - 782112 4.0 + Prom 782031 - 782090 5.9 693 302 Tu 1 . + CDS 782149 - 783414 1428 ## COG1301 Na+/H+-dicarboxylate symporters + Term 783428 - 783465 7.1 - Term 783402 - 783465 15.0 694 303 Tu 1 . - CDS 783477 - 784490 1258 ## COG1816 Adenosine deaminase - Prom 784536 - 784595 8.2 + Prom 784571 - 784630 7.5 695 304 Op 1 . + CDS 784677 - 785816 1581 ## COG0516 IMP dehydrogenase/GMP reductase + Term 785836 - 785877 6.5 696 304 Op 2 . + CDS 785889 - 787208 1138 ## COG1457 Purine-cytosine permease and related proteins + Term 787213 - 787262 6.7 - Term 787208 - 787244 2.1 697 305 Op 1 . - CDS 787252 - 787773 577 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 787801 - 787860 7.7 - Term 787817 - 787860 7.4 698 305 Op 2 . - CDS 787868 - 794686 5880 ## LJ1128 hypothetical protein - Prom 794776 - 794835 5.9 - Term 794877 - 794923 7.9 699 306 Op 1 . - CDS 794935 - 796404 1397 ## COG0531 Amino acid transporters 700 306 Op 2 . - CDS 796429 - 796758 195 ## lhv_1088 transposase - Prom 796868 - 796927 7.6 - Term 796856 - 796906 4.2 701 307 Tu 1 . - CDS 796969 - 797538 753 ## COG4721 Predicted membrane protein - Prom 797671 - 797730 6.8 702 308 Tu 1 . - CDS 797732 - 798814 1316 ## COG1363 Cellulase M and related proteins - Prom 798955 - 799014 6.1 + Prom 798778 - 798837 4.7 703 309 Op 1 21/0.000 + CDS 798925 - 800286 1312 ## COG0477 Permeases of the major facilitator superfamily + Term 800320 - 800353 3.1 + Prom 800313 - 800372 10.3 704 309 Op 2 . + CDS 800409 - 801704 1150 ## COG0477 Permeases of the major facilitator superfamily + Prom 801863 - 801922 8.9 705 310 Op 1 . + CDS 801956 - 802201 142 ## gi|260661007|ref|ZP_05861922.1| predicted protein + Prom 802203 - 802262 4.8 706 310 Op 2 . + CDS 802411 - 803049 245 ## gi|297206400|ref|ZP_06923795.1| conserved hypothetical protein + Term 803055 - 803096 6.6 - Term 803046 - 803082 4.4 707 311 Op 1 36/0.000 - CDS 803089 - 803985 1060 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 708 311 Op 2 . - CDS 803951 - 805060 944 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component - Prom 805111 - 805170 10.2 + Prom 805081 - 805140 8.6 709 312 Op 1 . + CDS 805211 - 805789 510 ## LAF_1631 hypothetical protein + Prom 805793 - 805852 3.6 710 312 Op 2 . + CDS 805877 - 806668 855 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 806676 - 806744 3.5 711 313 Tu 1 . - CDS 806775 - 813728 9512 ## Apre_1411 sugar-binding domain protein - Prom 813856 - 813915 7.9 712 314 Tu 1 . + CDS 814270 - 814830 151 ## lhv_1083 putative transposase + Term 814878 - 814921 3.5 713 315 Tu 1 . - CDS 814813 - 815358 498 ## gi|282932375|ref|ZP_06337806.1| putative surface anchor protein - Prom 815478 - 815537 10.8 + Prom 815516 - 815575 11.2 714 316 Op 1 34/0.000 + CDS 815705 - 816382 649 ## COG0765 ABC-type amino acid transport system, permease component 715 316 Op 2 . + CDS 816382 - 817116 565 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 817128 - 817168 9.2 - Term 817115 - 817155 9.2 716 317 Op 1 . - CDS 817158 - 817790 579 ## COG2323 Predicted membrane protein 717 317 Op 2 . - CDS 817800 - 818243 460 ## LSL_1087 hypothetical protein - Term 818276 - 818302 -1.0 718 317 Op 3 3/0.065 - CDS 818304 - 818825 458 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 818864 - 818923 9.0 - Term 818871 - 818904 -0.4 719 318 Op 1 . - CDS 818931 - 819488 688 ## COG1309 Transcriptional regulator - Prom 819522 - 819581 3.2 720 318 Op 2 . - CDS 819586 - 820254 518 ## gi|256851593|ref|ZP_05556982.1| predicted protein - Prom 820427 - 820486 10.6 + Prom 820386 - 820445 8.5 721 319 Op 1 4/0.039 + CDS 820471 - 821826 929 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 722 319 Op 2 . + CDS 821837 - 823159 359 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 823162 - 823226 6.8 - Term 823161 - 823198 4.7 723 320 Op 1 . - CDS 823216 - 824076 821 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Term 824100 - 824129 -0.5 724 320 Op 2 . - CDS 824132 - 825778 1518 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 825803 - 825862 5.8 725 321 Tu 1 . - CDS 825869 - 828283 3700 ## COG0495 Leucyl-tRNA synthetase + Prom 828474 - 828533 12.4 726 322 Tu 1 . + CDS 828567 - 829217 468 ## COG0671 Membrane-associated phospholipid phosphatase - Term 829193 - 829231 6.2 727 323 Op 1 4/0.039 - CDS 829239 - 830684 1387 ## COG0477 Permeases of the major facilitator superfamily 728 323 Op 2 . - CDS 830697 - 831890 1435 ## COG0192 S-adenosylmethionine synthetase - Prom 831965 - 832024 8.4 - TRNA 832039 - 832111 86.4 # Val TAC 0 0 - TRNA 832117 - 832188 64.4 # Glu TTC 0 0 - TRNA 832275 - 832365 57.5 # Ser GGA 0 0 - TRNA 832370 - 832442 83.1 # Asn GTT 0 0 - 5S_RRNA 832455 - 832569 96.0 # EU184020 [D:4881..4998] # 5S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. - LSU_RRNA 832627 - 832947 94.0 # AE017198 [R:1879440..1882488] # 23S ribosomal RNA # Lactobacillus johnsonii NCC 533 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Predicted protein(s) >gi|297148814|gb|ACGQ02000002.1| GENE 1 2012 - 2950 714 312 aa, chain - ## HITS:1 COG:L39484 KEGG:ns NR:ns ## COG: L39484 COG1597 # Protein_GI_number: 15673780 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 8 289 3 281 302 129 31.0 1e-29 MKNKNPKFSIIVNLKAGSGHAKKIWPIVERELKRRNLVYECFYTKAIGHAQTLAKEIAHK RECDIILVLGGDGTLHEVINGLLFAKQKTPIPVSYIPAGSGNDFAKSYGISNTPIKALDQ IINCQNIQNICIGHYIEKIGGREGFFINNLGIGFDARIVHKTNSSLTKKGLNKLNLGQFS YAMKGFSAFLTQNTFELIIGERHFKKAYISIVNNVPYIGGGIRVSPEMSPFKNGLELFVV EKKNIPNLLKVLSLFIQGKVDKSPYVHRFKNNKLAIKTKNSQFIHLDGEEFAKAEVNLIL DTQTYPFWQKHN >gi|297148814|gb|ACGQ02000002.1| GENE 2 3146 - 5884 2984 912 aa, chain + ## HITS:1 COG:lin2460 KEGG:ns NR:ns ## COG: lin2460 COG1511 # Protein_GI_number: 16801522 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 16 898 18 908 927 411 32.0 1e-114 MEKVNKWLKNPSFLKLIMISVAVLAPIFYSLSFIKSVWDPYAGAKNLPIAVVNEDKAVKY NKKTLAVGDQTVAQLKKNHDLKWVFVNENAAREGLKNREFYTVVTIPSDFSKNAATVMSK KPKQMQLKYKTNDSLNYLAETMSDVGIKQLNTMIRSAVTKAYATAMFSQLKTLGAGMNKA ASGAQQISDGTVTLTNGTKQYTAAVSQINDGIQTLKVSVTPLKAGASQLASGSSTLANGV SQYTAGVAKLNSGVNTLNSKSGDLLTGMNTFNSGLTKFTAGNAQLNTGLNTLSTNSAALR AGATSLQSASNQFGLLNNGASQVASGVQTFNNNLQSSNIVSSLTQALSMQEQVTSLEKQL STVQSLLKQLSGIDVNALTTAVDKLQNQAFTTAVDMGNLYTSLDDNQKISDDADQINSLL NSDKTLSSDTKAKLANLATEIKSKANDSTTQINSANNSWGNLLGVMLDTQSTLQPQIDTV QSLSKQLPALQSTMTQAQSLLTQTDTLLAALKKNQGLLTAMPTQLASLQSATSQIAAGTQ KLADSTGSINTLVNGINQYTNGVDTAANGAAQLASNSDRLISGFKLLYDGTNQYTQGVSQ VKTGTATLVSNNTTLNNGASQLSTALSSLNSQVPSLIDGVNKLATGTQTLNGNSNKLVNG MTKISSGSSQLATQLSNGADKVNSNIGTTNNAEMFATPTSLQHTSTSKVPNYGHALAPFA MATGLFIGVLIFTLEFPANRRRKAPKDAIRVLNDEFKRAVSVSLAMVVILNVIMMLSGLQ VDHVLDLFWICLVYTLAQMAIMQFLTLIMGRLGTIIGLLLFIASIGGAGGMFPMQVTNSF FNAIHPLLPMTYAINGLRQAITGGLGNSYASINALVLLGVAVLFYLLFLLAASTLIKKEV LEVESKQITQEI >gi|297148814|gb|ACGQ02000002.1| GENE 3 7040 - 8278 1455 412 aa, chain + ## HITS:1 COG:SPy0516 KEGG:ns NR:ns ## COG: SPy0516 COG0438 # Protein_GI_number: 15674620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 25 408 1 387 444 360 46.0 4e-99 MSFFVAQIASCTSYLYNSNHGGFFMNIGLYTDTYFPQISGVATSIQTLKRALEKQGHNVF IFTTTDPHVGKGVVEPNVFRFSSVPFISFTDRRIAFRGLFEATRVAKEVQLDIVHTQTEF SMGLIGKYVAHQLNIPAIHTYHTMYEDYLHYVLNGNLLRPVHVKQFTKAYLKNMDGVVAP SKRVENLLERYGVQVPIEVIPTGVDIEAMNGDQQRDVRPELGIDSDDLVILTLSRIAAEK KIDRILDLMPELIGQFPNLKLVIAGDGPDVDLLKNQVERLSVEDYVIFTGDVPHEDVGNF YRMADLFVSASDTETQGLTYIEALAAGTKSVVFDTDYTENVFDDIEFGQVFNSQKEMKEA IISYLKQGKQPINPSKLKTKLENISAAHFGKEVIGFYQAAIDTHSNKEVNDD >gi|297148814|gb|ACGQ02000002.1| GENE 4 8271 - 9317 933 348 aa, chain + ## HITS:1 COG:lin2699 KEGG:ns NR:ns ## COG: lin2699 COG0438 # Protein_GI_number: 16801760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Listeria innocua # 1 333 1 334 341 346 51.0 4e-95 MIRINMFSQADSVKGQGVGSAYQELINLMRTRLVDDFYMTINKYGQSDLTHYHTINPTYF INSFSPARGRKIGYVHFLPETLEGSIKLPQPAKKAFYDYVINFYKRMDQIVVVNPIFIDK LVAHGLDRNKIKYIPNFVSKEEFYTKSTVEKNAFRNQLGIPLDKFVIFGDGQVQERKGVD DFAKLAEANPDIQFIWAGGFSFGKITDGYDHYRNLVENPPKNLIFTGIVKREELVNYLNI ADLFLLPSFDELFPMSVLEAFSCGTPVLLRNLDLYKAIIDGYYMYGDDFTTLNEQIRTIK ANPDLLKKYASLSLKASEKYSEEHLAEIWRNFYLEQYELGVKLGQIHL >gi|297148814|gb|ACGQ02000002.1| GENE 5 9314 - 10315 597 333 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 6 328 9 333 357 137 29.0 2e-32 MRRNYFFGFIAVLVISFLVLYWDLSQTNFNALLASSKNINYGFIILILLVILCTYFCEAA ILFVLSGKQKFIDLLHFYRVPLIQALFNAITPMATGGQPAQLIALKQMKIEFGPASSLLL MKFIIYQLVVFFAYIWAFLTGHQLLGEMKHFNIIIVISFLIHMSTIIFLLFGMFARNLLK KIGAFIFKLGIRFISAEKVANFQTAFDQQVDEYYCESQRLFQHKKRLIISFILTCIQLTL FYSVPFLTIKALNLSGSWLELVQLNILVVLFMAIVPIPGASGGAELGFQALFKFFVKNNA QLVMGMFIWRFATYFFGMLLGVIAWLIRPKKEN >gi|297148814|gb|ACGQ02000002.1| GENE 6 10416 - 12491 2214 691 aa, chain + ## HITS:1 COG:BS_yfnI KEGG:ns NR:ns ## COG: BS_yfnI COG1368 # Protein_GI_number: 16077793 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Bacillus subtilis # 11 653 18 653 653 593 50.0 1e-169 MFRAKKIADWLFHTKLGYFSVVLTLFWIKTYLIYITKFSLGATGSMQNFLLLLNPIPAGM LLLGIGLFFKGRKSYWIIWIIDFIMSFWLFANILYYREFSNFLSFAIMSTSGSTSDNLGK SIAGITKATDFLAFLDLVIILALILFKVFKIDVRPLKLKVTSLIELLALSLMALNLFMAQ KDRSGLLTRTFDNNYIVKYLGMNEYALYDGVKTAQNNAEMAKANASDLKSVQAYLQKHQV TPNASYTGVAKGKNVLIIHLESFQQFLIDYKWKGKEVTPNLNKLYHQSDTLSFDNFFNQV GQGKTSDAELMLENSLYGLSSGSAMSSYGTANTFEAAPAILGQDGYTTAVMHGGEGSFWN RNNAYKQFGYQYFMPLSYYVNKKSYYIGYGLKDKIFFSQSIKYIERLPQPFYLKMITVTN HYPYELDKKNQSISKTDTGDSTVDGYVQTAHYLDQAIGELMSYLKKTGLEKNTMIVLYGD HYGISGNHHKAMAQLLDKKGYNDFDNLQQQRVPLMIHMPGLKGGINHTYGGEIDVLPTIM NLLGYNDTNTIQFGHDLLATNREQLVVQRNGDFVTPKYSKVTGTYYYTKTGKKVKNPSKK VKEELASLSNQVTTQLSLSDRVIRGNLLRFYHPSWFKPVNAKDYNYQKKIALKNLYAEDK KKKSSLWYQNGKKTTQSDFTTDAPELKKSSN >gi|297148814|gb|ACGQ02000002.1| GENE 7 12588 - 13895 1602 435 aa, chain + ## HITS:1 COG:BH3248 KEGG:ns NR:ns ## COG: BH3248 COG0773 # Protein_GI_number: 15615810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Bacillus halodurans # 8 435 4 431 433 464 52.0 1e-130 MLDKTKQYWFIGIKGTGMASLALIMHDLGFNVAGSDIDMETFTQKPLEDKGIVIKSFNRD NITPAQVIVKGNAFKEENPEVAAALEMKVPMHSYPDTVEEIIQQYTSIGISGAHGKTSTT ALLSHVLTEAAPTSYLIGDGEGRGVKDSRFFVYEADEYRRHFLAYHPDYQIMTNIDFDHP DYFKDINDTQSAFQSAADQTKKALFVWGDDPRLQKIETKIPKYTYGFKDSDDFQAYNVKK STDGTSFSVKAHGKEIGEFKTHLFGDHNIMNSLAVIGVALTEEVPMEDIQKGLLTYGGAK RRFSEKDFGDITVIDDYAHHPTEMKATIQAAKQKFPDKKLVVVFQPHTYSRTKEFASEFI EILRGVDKAYITPIFGSAREKSGDISSEDLTSQIPGSEVIDIANIADLTKNRNSVVVFMG AGDIEKYEDAFEKLI >gi|297148814|gb|ACGQ02000002.1| GENE 8 13999 - 16656 2738 885 aa, chain + ## HITS:1 COG:SPy0185_2 KEGG:ns NR:ns ## COG: SPy0185_2 COG0749 # Protein_GI_number: 15674390 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Streptococcus pyogenes M1 GAS # 327 885 1 557 557 587 55.0 1e-167 MANKKLLLIDGNSVAFRAFYALYRQLDRFQNPEGLHTNAIYAFKNMLDVIVKQENPSHVL VAFDAGKVTFRTKLYSDYKGGRQKTPSELLEQIPYIKEMLKDLGIKSYELANYEADDIIG TYSKMGEDAGYQVAVVSGDKDLTQLASDLTTVYVTKSGVSELEAFTPEHMKEVNGVTPTE FIDMKALMGDNSDNYPGVTKVGPKTASNLIQQYGSVENIYKHIDEMKKSKLKENLINDKD KAFLAKTLATIDRTSPVELKLDDLKKQETNTVELRKFYEQMNFRRFLAELNSSDNEIGEA SDKKVDYIVLNEKNLDKLPKDGSEVSFYLGMFGENYHLADFVGFSLKMGDNIYVSNDVSL LTKQPLLSLLEDQAIAKNVFDLKRTMVGLYRLGIKSHNMNYDMLLASYLVNNENNSNDLG EICQLYNYYDLQPDIDIYGKGKKAAIPEETVFFNHLAGKVLAIEVLKPTLLKKLTEHEQD DLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFAQRLTELEADIYLEAGERFNINSP KQLGQILFEKLGLPPIKKTKTGYSTSVEVLEQLKEQSPIVQKVLDYRQIAKIQSTYVKGL LDVIQPDGRVHTRYQQTLTATGRLSSVDPNLQNIPVRLEEGKKIRKAFVPSNSDGYIFSC DYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPNEVTPNMRRHAKAVNFG IVYGISDYGLSKNLGISRKQAKEFIDNYFEQYPKIKDYMDKEINFARENGYVETIMHRRR YLPDIHAKNFNVRSFAERTAINSPIQGGAADIIKIAMINMQKKLDELHLKTKMLIQVHDE LIFDVPADELETIKKVVPEVMQNAVQLDVPLVADSNWGHDWYEAK >gi|297148814|gb|ACGQ02000002.1| GENE 9 16669 - 17496 676 275 aa, chain + ## HITS:1 COG:lin1599 KEGG:ns NR:ns ## COG: lin1599 COG0266 # Protein_GI_number: 16800667 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Listeria innocua # 1 273 1 273 273 252 47.0 6e-67 MPEMPEVEIVRKTLNEIVLGKIIKEVKVWYPNIIIGDSESFSDQLKEKQIIKIDRYAKFL LFRLSDNLTIVSHLRMEGKYRLASPQDAKDKHDHVEFIFTDGTSLRYNDVRKFGRMQLIR TGTEKEKTGIKKLGPEALSDDFTLSYFKQALKNKKKNIKATLLDQDVVSGLGNIYVDETL WLSEIYPERPANSLADNEIKKLYLAINQVISQAIKERGTTVHTFLDAEGQTGGYQKYLKV YGRAGEKCFRCGNVLQKTKVAGRGTTFCPKCQEVK >gi|297148814|gb|ACGQ02000002.1| GENE 10 17496 - 18110 466 204 aa, chain + ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 190 1 193 197 140 40.0 2e-33 MTFYLAVTGGIASGKSTADSYFKDQGLPIIDSDEIAHNLLEKDTEVTNRIAQSFGKECLL SNGGVNRKKLGKIVFNDSEKLALLNQITHPAILAEIEKKKAVIKSGICIVDVPLLFESNQ QKYYDASLLIYVPEKVQLERLMRRNKLSKEEAMSRIKSQMSTSKKLKLATYSVANTGTIE LLQDKLSKILQEVKEKEDAMSKLS >gi|297148814|gb|ACGQ02000002.1| GENE 11 18088 - 18555 654 155 aa, chain + ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 152 1 152 153 182 58.0 2e-46 MQCPNCHKNASKVIDSRPTDEGRTIRRRRECENCGYRFTTFERVEQTPLLVIKNDGTREP FDREKILRGVAAAAQKRPVTSEQLDKLVDHVENEIRKQGVSEISSKEIGELVMNELVNVD DVAYIRFASIYRQFQDISGFMKTMKDIMDKHEHSN >gi|297148814|gb|ACGQ02000002.1| GENE 12 18572 - 19915 1207 447 aa, chain + ## HITS:1 COG:BH3145 KEGG:ns NR:ns ## COG: BH3145 COG3611 # Protein_GI_number: 15615707 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Bacillus halodurans # 2 443 5 471 485 88 23.0 2e-17 MYKNADPRLTYFVLNKVDLARKQEQVLTRLYQPLIGPIALSLYLTLINDYQHVPIKSQGK KLYQLQEILDIKLEDIFNSLHKLEATGLVKTFHGEMLGVGDYLAFQLVDVPEASEFFKTL LLSSLLLEKVGTTSFQNLNKEFNPTLPGFIKEGKDVSADFFDVFHLSAEKAINPDEQVLN AANLADQKATNLVRAKMSPIDWNFVKDLFSKYGISADEVDSHAGQMAQLMHFYGLSEQDF VNQVATTIVAGQDQLNIKQMQYRLNELATQNQSQKQIAQAFKRGDVKNNSSVDLNQSERE LLEMAKSLTPLKFLETLKLQKGGFVTYNERNVIRRLQLNYNLPDAWVNILIKTCLDYDSV LSDNITGRIANSWLQHQVTTPEAALEFTREWQKRKVTKTRKKRVEQGTDWKKKLAQDKIN KEASVGSADEQDLSEIMKNLQKFDPKD >gi|297148814|gb|ACGQ02000002.1| GENE 13 19919 - 20833 713 304 aa, chain + ## HITS:1 COG:SPy0340 KEGG:ns NR:ns ## COG: SPy0340 COG1484 # Protein_GI_number: 15674497 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Streptococcus pyogenes M1 GAS # 1 301 1 300 300 195 38.0 1e-49 MEKINDLLGSTFTQNSKDRKIDSKALINEALQDSEVQAFINQNHVPKEVVLSSLNNIFQF HQQKEAAKNGSNPIPGYLPKLILHGSTIDLAYAPTKEKSKDLIKQKANQHLELIDVPKRY RHVKSTDIIPNDDRREAITAISNFLMDIQNQDYSQGLYLQGDFGVGKTFLLAWLARALAE MGKKVIFLHTPSFFANLSTHIKEQNLDEEVARISKTDILILDDIGAESLSQWSRDDVLGV ILQYRMDNLLPTFFSSNLTFDDLEKHFEETRNNIEPIKAKRLMQRIKFLGKEVDVGGKNL RLDQ >gi|297148814|gb|ACGQ02000002.1| GENE 14 20858 - 22813 2170 651 aa, chain + ## HITS:1 COG:L49741 KEGG:ns NR:ns ## COG: L49741 COG3590 # Protein_GI_number: 15673785 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Lactococcus lactis # 24 651 5 627 627 459 40.0 1e-129 MKNILQVRGGAGDLTKADVNVSPKDNLYLAVNSAWQKDAVIPADRTEIGVNTEIDMRIEK RMKDDLAALLAGKEDVNSVPNLAKAVDFYKLALNIDQRNAEKTAPIQADLHELLALKDFS DFNTLAASNLNQILNSAVILPFAFEVDADMKNTQKHALYFAGPGTFLPDTSSYQAPDAEK LLQILAKQTQHLLELAGVETAEAEVIIKSGLIFDQKLAKVVKSSEEWSDYPACYNPISLA EFLIKFKSFAIKTYLETLFDKLPERVIVMEPRYLDKIEALFNPDNFDQIKGWMLMKFINN SAKLLSQEMREAAFPFRQAVSGVAELPPVQRQAYYLTNDFFDEVLGVFYGQKYLGQAAKA DITQMIKQMIKVYESRIANNTWLSQATKDKAIVKLNALVLKIGYPEKLEAIYDQLKVEPT VSLYENQKVCSVIRAKYNLSKLFKPVNRNVWLMPGNMNNACYDPQRNDITFPAGILQAPF YDLKQSRAANYGGIGATIAHEISHAFDNNGAQFDENGNLNNWWTKQDFDEFEKRTQAAVD LYDGVQYGPSKLNGKQIVAENIADLGGLTCAIQANKLEGGNMKDLFENYARSWAQIQRPA AIKTEVSVDVHAPQPTRVNIPVQCQKEFYETYQVGPTDGMWLDPEKRVEIW >gi|297148814|gb|ACGQ02000002.1| GENE 15 23103 - 25034 2686 643 aa, chain + ## HITS:1 COG:L0357 KEGG:ns NR:ns ## COG: L0357 COG0441 # Protein_GI_number: 15673893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Lactococcus lactis # 5 641 4 644 646 780 58.0 0 MSFSITLPDGSKKNFDQAVSVLDLAKGISTSLGKAAVAAKVDGEVKPVNFMLEKDSEVAI LTDKDEAGLAVLRDTVAFLLEAAAQAKYPELRLGEHEANEDGFFVDTDKEDQIKITELPE LEKAIVKLIKNGQAIEPVMVKKSELEAEFKNDPFKMELLKSEGDEVAAFKMGDFVDFGFK ALLPNSGKVKHFKLLSVAGAYWQGKSSNPMLQRLFGTAFFKETDLEADLKRRAEIKERDH RTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVIERYIIDKELADGYQHVYTPVLMNLDA YKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPIRIAELGMM HRYEKSGALSGLQRVREMTLNDGHTFVALEQVQEEFAKILKLIMDVYKDFDITDYYFRLS YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKTALGND ETMSTIQLDFMLPERFDLSYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTWL APEQVEIIPVNLDAHGEYAKKVRDELLKHGFRAEVDFRNEKMGYKIRESQTQKVPYTLVL GDDEMNSNAVNVRPYGTEKQESMSLDKFIDELQADVDSYSREK >gi|297148814|gb|ACGQ02000002.1| GENE 16 25263 - 25772 402 169 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 1 165 1 166 166 159 49 3e-37 LNESIRAREVRLIGEDGEQVGVVSKNEALNQAADADLDLVLISPNAKPPVARIMDYGKYR FEQQKKLKESRKKSKTVSVKEIRLSPTIEGNDFDTKLNHVRKFLSKEGAKVRVSIRFRGR AITHTELGLKVLEKMADATKDIANVTAKPKMEGRSMFLMLAPKSEKDKK >gi|297148814|gb|ACGQ02000002.1| GENE 17 25799 - 25999 345 66 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526539|ref|ZP_03956588.1| 50S ribosomal protein L35 [Lactobacillus jensenii JV-V16] # 1 66 1 66 66 137 100 1e-30 MPKQKTHRASAKRFKRTGNGGLKRHHAFTGHRFHGKTKKQRRHLRKAAMVSRSDLKRIKQ MLSQMR >gi|297148814|gb|ACGQ02000002.1| GENE 18 26043 - 26399 592 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526538|ref|ZP_03956587.1| ribosomal protein L20 [Lactobacillus jensenii JV-V16] # 1 118 1 118 118 232 100 2e-59 MPRVKGGTVTRKRRKKVLKLAKGYRGSKHLQFKAASTQLFVSYKYAFRDRRKRKSEFRKL WIARINAAARQNDLSYSKLMHGLKVAGVDINRKMLADIAYNDEKTFAELAATAKKALN >gi|297148814|gb|ACGQ02000002.1| GENE 19 26633 - 27304 233 223 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P [Lactobacillus reuteri DSM 20016] # 12 222 34 241 477 94 30 3e-39 MVLSKKSESQVNNKTSVESMINKYIKKAHQALEIMATFDQERVNKICEAVAIAGEQNNYA LAKMAVEETGRGVVEDKAIKNMFATENIWNSLRHEKTVGVISEDKERELIKIAEPVGVIA GVTPVTNPTSTVLFKSLIALKTRNTIIFGFHPQAQNCCVKTAEIIRKAAVNAGAPEDCIQ WIEKPSIEATNTLMNHPDVQLILATGGPAMVKAAYSSGKPALE >gi|297148814|gb|ACGQ02000002.1| GENE 20 27397 - 29229 1598 610 aa, chain + ## HITS:1 COG:lin1675_2 KEGG:ns NR:ns ## COG: lin1675_2 COG1454 # Protein_GI_number: 16800743 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Listeria innocua # 204 610 1 410 411 390 47.0 1e-108 MVCASENSVVVDSSIYDQVKKEFAAWNCYFLKKNEIKPFTEKFIDPKRGTVAGPIAGKSA YQIAKLCGLEVPENTKVLIAEYKGVGKKYPLSAEKLSPVFTLYKAKDHEDALKICAELLN YGGRGHTAGIHTNNQALIKEFSMKMSACRILVNTPAALGGVGDLYNNLLPSLTLGTGTYG ANALSHNVSASDLLNIKTVAMRRDNMQWVKVPKKTYFEHNAANYLRHMPDVNRFFIVTDQ TVANEFGNRITDILANRLGEKSYEIFQAVNPDPDSDVIFDGVHRMKIFNPDVIIALGGGS VMDAAKAMRLFYENPDMTFEDSYQKFLDIRKRTVRFPKDNKVKLVCIPTTSGSGSEVSPF AIIKDAKTGIKHPLCDYSLNPDVAIVDDQFVQNLPENLVAAAGFEALAHAIESYVSTMAT DFTRGWSMEAINLIFENLEQSYKGDLVARNRMHNAATLAGMAYGNAFLGIGHSIAHCLSS HFNLPSGVSDILVMPEVIRFNAKRPNKLAMWPHYATYRADKDYVKIAQSLGIKGTNDAEF IDGLCQKIIDLAHSLDISLSLKDYGISKSESEQHLSEIAVEAYGDQNTVTNPSAMLIGEI KDLLLKIYQA >gi|297148814|gb|ACGQ02000002.1| GENE 21 29317 - 29847 552 176 aa, chain + ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 153 25 175 194 148 49.0 6e-36 MIFRPIYTIDTIYHLDPTELKKMGIKAVFSDLDNTLLAWNIRDSSQEMAILNKKLAEAGI KLIVISNNNPERVSKAVSKFDVAFWANARKPLPFGILKALEHYNLSKENVIMVGDQLITD IQAGNLAGVKTVLVKPLVETDKWNTRINRFFEKIIFFFLNINKKIEFKESLKWMKN >gi|297148814|gb|ACGQ02000002.1| GENE 22 29832 - 30941 1062 369 aa, chain + ## HITS:1 COG:SP1749 KEGG:ns NR:ns ## COG: SP1749 COG1161 # Protein_GI_number: 15901581 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 3 369 2 368 368 387 51.0 1e-107 MDEELRCIGCGAVLQSQDENEAGFLPASALNKALEGENQEVYCKRCFRLRHYSEIMPVEL NNDDFLRLLNSLGDKKALIVNVVDLFDFNNSLIPSLKRFVGNNDFILVGNKVDLFPLNSK ESKIKDWMRQEANRMGLYPKDIFLISAAKKRNLQDLIAYLDRASQNQDVYFVGTTNVGKS TLINSIIDLMGDVKDLITTSRFPGTTLDQIKIPLDSGHYLVDTPGIMTDKQLASYLNSKD LDLIAPKKPLKPATYQLNSGQTLFLGGLGRIDFVSGEKTSFTVYTARGLYVHRTKTENAD EFYEKHVGDLLTPPHGDENLPAMKGQTYHPTTKSDLLFGGIGFITVPAGVVVKTYLPGGI GQGIRRALI >gi|297148814|gb|ACGQ02000002.1| GENE 23 30955 - 31584 731 209 aa, chain + ## HITS:1 COG:BS_yqeJ KEGG:ns NR:ns ## COG: BS_yqeJ COG1057 # Protein_GI_number: 16079618 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Bacillus subtilis # 22 207 2 187 189 174 43.0 1e-43 MDCVVANKPKVRAQEIKKVSGKQIGIMGGTFNPVHIAHLVAAEQVMTKLHLDEVWFIPDN IPPHKELALNIPAEDRANMLELATKNNPKFKVMLLELYRGGISYTIDTMHYLKKEAPENN YYLIMGSDQVNSFHTWKDADELARLATLVGIRRPGYTQEAHYPLIWVDAPDIRLSSTAIR HAVKTGTSIRYLVPDSVREYIEQRGLYRD >gi|297148814|gb|ACGQ02000002.1| GENE 24 31652 - 32185 649 177 aa, chain + ## HITS:1 COG:SP1746 KEGG:ns NR:ns ## COG: SP1746 COG1713 # Protein_GI_number: 15901578 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pneumoniae TIGR4 # 1 171 22 190 197 163 48.0 2e-40 MDEARFRHCQGVSITARKLAKLNNYDEDKAALAGFIHDYAKQVANEEFIRVIKDKSNGFD QDLLNWNRAIWHGIVGTYFIKRDLGITDSEILTAIRRHTTGDVEMTTLDKIVFVADYIEP GRSFSGVDEAREVTFANLNDGVGYELAHTLQFLANNRQKIYPKTLAAYNVWGIKKEK >gi|297148814|gb|ACGQ02000002.1| GENE 25 32188 - 32535 327 115 aa, chain + ## HITS:1 COG:BH1328 KEGG:ns NR:ns ## COG: BH1328 COG0799 # Protein_GI_number: 15613891 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Bacillus halodurans # 1 112 1 112 117 89 33.0 2e-18 MNSEKLLDITLDAISDRHGEATEAYDMRGISILADFYIVTSASSNRQLHALVNSILDKVR EYDYHDYRVEGTRDSNWLLVDLGDIVVNIFTEDARDFYGLESLWANGKKLDIPED >gi|297148814|gb|ACGQ02000002.1| GENE 26 32538 - 33692 1306 384 aa, chain + ## HITS:1 COG:BS_ylbM KEGG:ns NR:ns ## COG: BS_ylbM COG1323 # Protein_GI_number: 16078570 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Bacillus subtilis # 1 381 1 403 415 213 33.0 5e-55 MSVVGIIAEYNPFHSGHEFLMNQARLKAGEDPIIVIMSGNYVQRGEMAITDKWTRAKYAL TSGADLVFQMPFATSVQAADIFAKGSMEILSKLGCEELVFGVEDANLNFAYLGEKIKQIP ESKMDFNDYTQTYSTQYNQMVAREVGREVNEPNIILALAYAVANADLAKKLKLSPITRIG ANHDDLLEREKVVQSASAIRNLLLEEPDLADLKQWLPKAEAEQLLAQSVYPNWNLLFPFL KYKIESASLAELQQIYQMSEGLEYKLKAEIHEARDFTEFLRHIKSKRYTYSRLRRLCLYT LLGVTNEDIANSQADVSSVLLGYSKRGRNYLKKIRKDVELPIISKVDHKNSQIGSLALDV RVDRLFEQIIGRDQNFGQKPIEVK >gi|297148814|gb|ACGQ02000002.1| GENE 27 33692 - 34237 583 181 aa, chain + ## HITS:1 COG:L39365 KEGG:ns NR:ns ## COG: L39365 COG1399 # Protein_GI_number: 15673577 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Lactococcus lactis # 12 164 9 161 176 80 36.0 1e-15 MLTINFSQIKKSKEPLTEITTKLETRPEFFARAKELLLDAKNIQVKGQMFYQEPFVTGNF QVEADVVAPSSRSLAPVPMHLNFSFTENYLDREPTNEEKEEVDMIVPIDKDTIDLQTAIE DNLLLSLPTTILTKDEEENNEFPQGTGWEVVSEESLEKQNEEKINPAFAKLKDLFPDSDE K >gi|297148814|gb|ACGQ02000002.1| GENE 28 34412 - 35134 1016 240 aa, chain + ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 230 1 225 226 271 69.0 6e-73 MAKILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPDLNG LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVN IEKKVSSNAAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSR EQLLNKIWGPDSNIETNVVEVYVRYLRNKIDAPDRPSYIKTVRGTGYMVREDDAPVPEAN >gi|297148814|gb|ACGQ02000002.1| GENE 29 35109 - 36677 1195 522 aa, chain + ## HITS:1 COG:L0130 KEGG:ns NR:ns ## COG: L0130 COG0642 # Protein_GI_number: 15673575 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 5 501 10 488 491 280 33.0 5e-75 MHQFQKQTKKKETKNTSLVKKWVSLVALTITVSFLVFSVIIYSIVSQQFLNQERQVAETV VENFEHRLSSINKELQISNVVPTLSPTTQRILNGGPTISAADNNTSSTENGFSDDILQNL TNQDISVVIFDKSGDVVFSNGKNQADFLSNITHKEEQIKLNLGKQSLTIYQPIRSANNRK ITGYIAVTDDMSNFNSMMDKVRAWMIGISIGATIIFILISYFIIRGIVWPLNAMSKVARQ INKDPNSDVRIPDLKRDDELGELAQSFDQMLDRVQGYIQQQKQFVGDVSHELRTPVAVIE GHLSLLERWGKNDPQILDESIKASLQEAERMKHLIQEMLDLTRAEQIDIQYPNEVTNVSE VLTRVVSDLQLVHQDFTLRLNNDLNEDTMIQMYHSHFEQLLIILIDNAIKYSTDRNEVII SSSVEDGEVVVSVQDFGEGISESEKSKIFNRFYRVDKARTREKGGNGLGLSIAQKLTQSY HGKISVDSVLGNGSNFILRFPVLTKKEVKLLNKKKEKAQRGK >gi|297148814|gb|ACGQ02000002.1| GENE 30 36806 - 37675 289 289 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 233 1 233 311 115 31 3e-24 MTYAIEVHNLSKAFNEQAVLSNINFKIKEGEIVALLGKNGAGKTTLIRLLNDLLSKDTGT VKIFGQSKPNRNLIGVMPQKSIILDRVKVKEAVNLARSFYKSPMPFDKLVELANIGALLD KYTDKLSGGQLKRVSFAIVMAGNPKLVFLDEPTAGMDVEARNEFWQKINGFKKLGTTFLI TSHYPEELEKVAGRYLIINNHRLVFDGSLEQMKKQNQTVKVSFVSQLEKVSFVNLPAVVD INENNNHYVLKVNGLNAFLPSFIKYLNQVENLEISQSNLENLMKKWMED >gi|297148814|gb|ACGQ02000002.1| GENE 31 37678 - 38415 679 245 aa, chain + ## HITS:1 COG:BS_yvfS KEGG:ns NR:ns ## COG: BS_yvfS COG0842 # Protein_GI_number: 16080461 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Bacillus subtilis # 1 233 1 234 245 97 25.0 3e-20 MNNFAYQLKINLKRFLLRNPFFFIFIISLPAVFYLIYTKVAITDAPAGWNKRFLVSMIVY GILINSLSTLSRILSSDDKKGFKLFVKLSPTSLNSYYANIFLVFEFMNIIAVSAVALVGV FINKVNLSLENWLVLLVAVPVLCLPFALLGVLISFVGDENAVGALANLLMFTIAILSGLW WPLSMMPDYLQKIGKIMPGYPASQLSLDLLLKQNMSGNQLQTLFVWLIVLILILGLVVKN KGRKA >gi|297148814|gb|ACGQ02000002.1| GENE 32 38485 - 39537 1043 350 aa, chain + ## HITS:1 COG:BS_yocF KEGG:ns NR:ns ## COG: BS_yocF COG4585 # Protein_GI_number: 16078979 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 56 348 71 366 370 118 29.0 2e-26 MPYYYLLFLFFAVFAALPIKNLFDWVCFLALIPFAKFYRDSYGEEIPNYDWEITAMIAIA ALWVINYQYYYNFIFAGFCIGFSEIKPHIFKNRVVIYLSSVTACAVYTVIKQGFDINLFF GLLFAYSCVFFAHSFAVSQRKRFVLKQDNERLSIIIKQSERDRIAGQLHDNLGQVFSTLA INADLAEKLVDKKPDLAKKQIQQIGENARDNLNLVREIVADLRKQKLVQVLAVESENLEN AKFDLTTENQAQAFTWPDNIQNELSFIIREAIANAIRYSHGNLVRITFNEDSNNYFVRIK DNGIGFKNKANTSREHFGISGMQTRTEKLKGSFAISDKNGVEISISIPKE >gi|297148814|gb|ACGQ02000002.1| GENE 33 39540 - 40145 550 201 aa, chain + ## HITS:1 COG:BS_yocG KEGG:ns NR:ns ## COG: BS_yocG COG2197 # Protein_GI_number: 16078980 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus subtilis # 1 200 1 197 199 174 47.0 7e-44 MTRLFLAEDQELLNSALKMLLDLEDDFEVVGTSLTGEDVANKIITLKVEVALLDIEMPKE SGLEIAKELREQNYPGKIIILTTFARANYFKEALAQKVDGYLLKDSPSDSLVKAIRAILD GNTVFDPKLVSGVLNEVDNPLTNREMDILKMLEQVATTKELAQKLFLSEGTVRNYISSIL SKTGTSSRLEALNLARNKGWI >gi|297148814|gb|ACGQ02000002.1| GENE 34 40180 - 41154 871 324 aa, chain - ## HITS:1 COG:SPy0351 KEGG:ns NR:ns ## COG: SPy0351 COG0706 # Protein_GI_number: 15674505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Streptococcus pyogenes M1 GAS # 1 321 1 306 307 157 33.0 4e-38 MKKNKKILLLVSLVAMLAVILTGCAAYKTGANAAPKGGFFGLIYQFIGIPIRNIMLATEN AIGGTNGAGWAIAIITAVIRFVLLPLMLSSSKKSTIQQEKVSRLQDQFKLIQDALKDRSL TPDKQMQISQLQQKVYRENNLSITGGIGCLPLIVQFPFMIGIYQAVAYSDALYKSSFFGV SLGKPSLLFAIVGALFYLAQSLLMLRGVSEQQRAAMQSTIFISPLMTLFISMSTPGALGL YFLVGGIIALIQQVIVTYIILPRAKAKIDAELKEKPMKVVVTKEIIDDIIGNDSDNSVNS SDSTSSTEEELRKRNAGKQKRENK >gi|297148814|gb|ACGQ02000002.1| GENE 35 41211 - 41486 409 91 aa, chain - ## HITS:1 COG:PH0897 KEGG:ns NR:ns ## COG: PH0897 COG0068 # Protein_GI_number: 14590753 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Pyrococcus horikoshii # 1 78 1 78 773 65 41.0 3e-11 METREIHVYGLVQGVGFRWCTQILAKKFFLKGWVRNENDGSVTILVQGKDYILEKFIQEL PSAQGPTARIDKIEQKQLTNVAPLTRFTVKY >gi|297148814|gb|ACGQ02000002.1| GENE 36 41572 - 42339 178 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 113 252 101 240 255 73 30 2e-11 MQKITSTTNQTIKNLAKLNKKKYREQEGFYLIEGFHLVDEAFKSKLNFKYLLATQAAFEK LSIQYHLDLTDKRLIQINERVAKHLSATTNSQDVFMVLKINQPKHFTFNFGKWILLDSLA DPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHIPIIKADLLKTIEQFK ENYIPVYASVLDDEAKELPDFEKTKELALIIGNEANGVSGDAVNLADEKLFIPIKGQAES LNAAIAAGIMIYHFA >gi|297148814|gb|ACGQ02000002.1| GENE 37 42412 - 42711 363 99 aa, chain + ## HITS:1 COG:lin1183 KEGG:ns NR:ns ## COG: lin1183 COG1733 # Protein_GI_number: 16800252 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 21 98 8 86 107 65 46.0 3e-11 MSTASQEKDGCQGCHNKFENCEHFINAFAFIGKKWNGLIISSLCSFTPMRFKDLANAVHA CSDRVLVERLKELEELKIVKRSVSDSGIITYKLLKKAQN >gi|297148814|gb|ACGQ02000002.1| GENE 38 43060 - 44109 1355 349 aa, chain + ## HITS:1 COG:L0354 KEGG:ns NR:ns ## COG: L0354 COG0016 # Protein_GI_number: 15673911 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Lactococcus lactis # 1 344 1 344 346 433 58.0 1e-121 MDLFERLAKLRDEGLAQIQKAENEKKLNDVRVTLVGKKGELTEILHSMKEVAPENRREVG QRVNELRDLFNQKLDDAKKDLLKKLVAEKLKAEAVDVTLPGRKTRLGSKHVIRIIQDDLE RFFIGMGFQVVQGPEIETEHYNFEMLNLPKDHPARDMQATFFVDEGHLLRSQTSPVQART MEKHNFENGALKMISPGKVYRRDDDDATHSHQFAQMEGLVVDKNITMGDLKGTLEAVAKH VFGQDRETRLRPSYFPFTEPSVEMDVSCFNCDGKGCPVCKYTGWIEVLGAGMVHPNVIRN AGLDPEVYGGFAFGLGLDRFAILKYGVDDIRDFYTNDIRFLTQFRQEED >gi|297148814|gb|ACGQ02000002.1| GENE 39 44110 - 46518 2910 802 aa, chain + ## HITS:1 COG:SPy0769_2 KEGG:ns NR:ns ## COG: SPy0769_2 COG0072 # Protein_GI_number: 15674815 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 149 802 4 657 657 461 40.0 1e-129 MLVSYKWLQDFLKLDIDPNELAEKITRTGIEIASVDHPMEGLKKIVVGHVLECEMHPDSD HLHITQVDVGEDEPIQVVCGAPNVAAGEYVIVALHGARIAGNEKIKRGKIRGVVSNGMLC GLQEIGFSDSVVPQEFADGIFVFPEAIKPGTDVYEALGMDDYILDFDITPNRADTLSMEG AAYEVGAIVDQKPNIEDVALKGDGSDWTNELSVSVDKKLAPKFLMRKVSNVKIAPSPLWL QTRLWNAGIRPINNVVDATNYVMLLTGQPMHAYDASAFSGKCEVRLAKKGEKLTLLNENE LELNSEDIVITDGTKPVALAGVMGGLNSEVTDSTTDVILESAVFDPALVRKAALRHDARS ESSARFEKGLNWDNTEKALNMAALLLRNHAEGTVNEGIIYAQNEEKPKCEITANFAYFNK ILGTELSNEEILTIFNRLNFVTKSAGDEVTVTVPNRRWDISIKADLVEEVGRIYGYDNIK STQPVLGQTHGGYNADEIKVRHLRHLVEAQGLVETINYSLTSEDLAYLFRDKALAPVKVE WPLNSARTTMRQNLMASLVETASYNFARKQNEVRIFEQGRVYDHENDEYNEHTHLAALYS GTVEEVNWQHIEEKVDFYYVKGQVETLFDAVIKSPAKIEYKAINLPGMHPTRTAGIYIND QYVGFVGQIAPLLNLFDKNLRGKELYGYELNLDLILPLMDGETKSMPAPKYPSVERDMSL LVAENVTSDEVANVIRENAGKYLVKLDVIDVYQGKHIEAGKKSLAYKLTFLNEKETLTDE VVTKAVNAVSEALTSQLEVEVR >gi|297148814|gb|ACGQ02000002.1| GENE 40 46585 - 47061 891 158 aa, chain + ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 158 4 159 160 158 57.0 4e-39 MPQKTYPMTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAV EQRIAQVEQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGK ISNDSPIAQALLGKHKGDTVSISTPGGSFDVVINDVKA >gi|297148814|gb|ACGQ02000002.1| GENE 41 47127 - 49685 2286 852 aa, chain - ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 16 850 12 872 883 204 24.0 6e-52 MKINYQDKHVRTILYLLSFFIPFAIFAGYFAMHGMRILTVDLGQQYIDLLAFYKDHFFNP AAYSYSFANGLGGSLIGTFFYYLASPFNMLLLFFSKTQLPIAIYWIISLKVGTIGLTSYY YFQKHYQKIYALAGSNAFALSGYVIAYNLNLMWLDSLILLPLLILQIHQVGKKNWLILVT FLLWVTDFYTGYMALVFGFFYFAIYLFNHPTNWQKKLLNYVIKSTTATLLAAFALIPTIY EIINNKNSSAVFNWGIQFTPYKLLGKFISGSYSFHEMQAGLPNVYLTILFFLISLTYFLS QEFSLKERLSYAILLLFLFISCWFNPLVLFWHLGQFPTWYPARFSFVISFLLIELALKVL SRQSKISIKQLILIVLISAGLFTWLLTKNRFDFLDHNKVLISLVFAVIAIIIAAALPLKN ILVQGLIWGLTIIATALNLNSSLNSISYQVNEDYSNFTENVASATNSIKSQDSSLYRLEK TFSRSDDDPFSDGYYGLSVFNSIANSKINSFISYQGLAHNSNAFINKFSTQVLDSLLGVK YTLQPYYGDDNVKNSQRMKYNNRLYRTDINSMTFGGDFKQLSYAINQTALPLAYISQRNW ATNYFENQPIKNQQSFYTAATGDKTNLFTAINLPTAQLENAKASGNSTYQKKVLTQVATI SYSFTPKTNNSYYLQLPASLTGKIVSFTINGESVDIDARYDQVKLLNIANKQKGKKLVLS FTLLKNKVNLANIIIWELNSKHLTTTLTKLKENQPIVKETKAGTIETSTFTTSGNKTLRT SIPYDNNWTIYDNGKKINYTKFTNTFLEIQLVNGKHQIKFVYVPHQFYLGLLLSVITGIC LLAYYFYHKRNQ >gi|297148814|gb|ACGQ02000002.1| GENE 42 49796 - 51922 2012 708 aa, chain + ## HITS:1 COG:BS_pbpA KEGG:ns NR:ns ## COG: BS_pbpA COG0768 # Protein_GI_number: 16079555 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Bacillus subtilis # 19 702 19 687 716 391 36.0 1e-108 MNFLKNNNHKSDRKAAETPIRMKIILGVIFILFAMLIGQLAYLQLIYGSRFHSEVQKSDD TVVTSAVPRGIMYDDKGRVLVGNKANNAITYTKGSSVTSKQIYNISTALSQYITISNETP TDLQLAAYYLGNSSNYAKEYAKLPKSQKYDSDGNELSNSKVYSTLEKQVIKEKKHYTSRQ KTAALIFNKISGAYSLSTIYIKNQNLTDKEVALVGEHLSDLPGVGIGTDWERTYPNGSSI KTIIGSVSSEKAGLPSENLQYYLAQGYSRNDRVGTSYLEKEYEALLKGTKTESKLTTKSN GTVTQTKTVYKGQAGASLILTLDSKYQAKVQKKLKSVYSSALSAGAAHYSSGAFAIAMDP NTGAIKAVAGLDHDVKTNKVTDDALGVINQSFVMGSVVKGAQVAGGLINKVITPSSNTLP DTPIYLPGTPVKKSVYPVGTFSSLDAETALEVSSNIYMMQLTLRWLNAKYTPKTYIHMPT DAFDILRRNFAMFGLGQKTGIDLPGEISGIEGKTHNSSGQLLSGSVLDESYGNYDAYTPI QLAQYISTIANGGYRMQPYLVQSVGQTNSSGTKVSINYSKTPNVQFRIPWTSSELNVIKT GMYRVVHGTNAWGTAHTLKDVKPSISGKTGTAQTFYYDASASKKKNSSSDPIELINATFV GFAPSSKPKLAVVVVFPGLDPNLEGTYTLQVAKEMVEDYFKLNKYAEN >gi|297148814|gb|ACGQ02000002.1| GENE 43 51998 - 52147 266 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526513|ref|ZP_03956562.1| 50S ribosomal protein L33 [Lactobacillus jensenii JV-V16] # 1 49 1 49 49 107 100 1e-21 MADNIILECTECGERDYLTKKNKRKHPERLALKKYCPRERKATLHRETK >gi|297148814|gb|ACGQ02000002.1| GENE 44 52201 - 52749 581 182 aa, chain + ## HITS:1 COG:lin1373 KEGG:ns NR:ns ## COG: lin1373 COG0212 # Protein_GI_number: 16800441 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Listeria innocua # 1 153 1 155 179 82 35.0 3e-16 MKKKELRQRQILRLKEFAKKDRKVEEDILLQNKFLANSLLEGVKTIGVTCPLDFEIDNQI IIEQARKKGIKTYLAKSYHDKSMDFVYFDDQTRLEKSDFGVWEVANPTEINNQLDLLLVP GLAFSKVSHDRLGFGGGYYDCFLAEHNCKTVSLVNSVMLFDTPAWPIEVTDKQVGELITL TK >gi|297148814|gb|ACGQ02000002.1| GENE 45 52787 - 53476 869 229 aa, chain + ## HITS:1 COG:BH1421_1 KEGG:ns NR:ns ## COG: BH1421_1 COG0705 # Protein_GI_number: 15613984 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Bacillus halodurans # 5 180 179 349 349 127 40.0 2e-29 MNNPRIRKYYKTNAMTNTIFVVLVAMFALETFNGGSEDSAVLFKLGAQFNPAVIILGQWW RLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLAGVGGNLMTLAFGSDN AVSAGASTALFGLFGAMIALGIANRTHEGMAYLGRQSFVLAVINLLFDINVPQIDTWGHV GGLIAGFLLTVILGDQNLRGYKLPIKILAALALIVFILATLRMGFIISE >gi|297148814|gb|ACGQ02000002.1| GENE 46 53476 - 53685 156 69 aa, chain + ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 66 1 66 67 70 60.0 6e-13 MKTLYDVQQLLKKFNILVYVGKRKWDIELMALELDNLHHAGVISQKDYLTAKLILRREHE IEEKNEKES >gi|297148814|gb|ACGQ02000002.1| GENE 47 53730 - 54131 391 133 aa, chain + ## HITS:1 COG:SA1364 KEGG:ns NR:ns ## COG: SA1364 COG0607 # Protein_GI_number: 15927114 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Staphylococcus aureus N315 # 31 132 27 128 128 99 49.0 2e-21 MNTFLLVIDAILLVIILSFLCSWLWNKYQAKRVGGALSNEEFRAGMRKAQIIDVRESAPF KRKHIDGARNIPMTMFKYQHGEIRKDLPVYLYSDASSITLRAARILQKDGYKKIFWLKDG LENWDGRTKASKY >gi|297148814|gb|ACGQ02000002.1| GENE 48 54221 - 54400 342 59 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1381 NR:ns ## KEGG: LGAS_1381 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 59 17 75 75 76 67.0 3e-13 MAKKFGAGFVTGMITTLGTIAAGVFTYKKKVLDPAEQEAKRIEQNRIRANRKSHSAHLG >gi|297148814|gb|ACGQ02000002.1| GENE 49 54469 - 55389 981 306 aa, chain + ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 2 285 3 288 314 245 44.0 7e-65 MQKIIVVVGPTAVGKTSLAIKLAQQVNGQIISGDSMQIYREVSIGTAKATEEEQAAAPHL LINQKSVFEEYSVKDFVADATKAIDKTIQIKKTPIICGGTGFYINALINKLQLGEPGEYE TSVEPKFEVFLAEHGPEKLWQLLQERDPQACEKIPVENTRRVLRALTVIDRTGEKFSQQQ VQIKPRYDALLIGLNSERQLVYDRINKRVDIMMTEGLLDEAKFIYENRAREYQILQAIGY KEFFPYFEGTSDLNTCVEKLKQASRKYAKRQLTYFRNKLTVNWYDSLNNPNYFEEILTKV EQWQNE >gi|297148814|gb|ACGQ02000002.1| GENE 50 55382 - 56629 1294 415 aa, chain + ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 6 410 2 406 412 412 49.0 1e-115 MNNYPKELIQIVKEVNNLIAPKLAELDEQVVYNQAKVLETYKHASVAEADLKGTNGYGDD DTGRDKLEQIFAEVFQTEAALVRPQFVSGTHTLATAMKGNLQAGDTLTYLTGMPYDTLQT VIGLTPHKQGTLMQRGIKFSYVPLKNNQVDYQAAKEILLRDKPKMVAIQRSKGYSTRPSY NVEQIKEMIAFVKEVLPSAIVFIDNCYGEFSEKHEPTEYGADLMAGSLIKNGGGGIAKTG GYIVGKKQLVENATYELLAPGCEEEGATLTNMQDFLQGFFIAPNTVVNAIKGMVFSSALL EKMGLEVAPRWDAVRTDLIQNIIFHDPEKMVKFAKELQKNSPVDSFVDPVPYNMPGYEDK VVMAAGTFVSGSTIEFSADGPIREPYALYMQGGLTYAHVKIAVMNAVNELFFKKV >gi|297148814|gb|ACGQ02000002.1| GENE 51 56865 - 58220 1679 451 aa, chain + ## HITS:1 COG:BS_glnA KEGG:ns NR:ns ## COG: BS_glnA COG0174 # Protein_GI_number: 16078809 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Bacillus subtilis # 11 450 4 442 444 540 56.0 1e-153 MLTGGNMKKVYTEEEIRKIVRDQNVRFLRLCFTDINGTLKNVEVPLSQLDKVLANEIRFD GSSIDGYVRIEESDMVLYPDFSTWAVLPWGDNEGGKIGRLICSVHNTDGTPFAGDPRNNL KRVVAEMKDMGYSNFEIGFEAEFFLFKEDSEGNWTTKPTDQSSYFDMASEDEGAKCRRDI VETLEKIGFEVEAAHHEVGAGQQEIDFRFDDAVATADKVLTFKMVVKQIAKKHGLHATFM PKPVEGLPGSGMHTNMSLFKDGKNVFYDKDGEYKLSKTALYFLNGILSHARALTCVGNPT VNSYKRLIPGFEAPVYISWANKNRSPLVRIPDAEEIGTRLEMRSADPTANPYLLLAACLK AGLEGIKEAKMPMAPITSNVFEMSAEEKKERGIIALPSTLHNATKYFKQDKLIQDALGEH LTQSFIESKELEWAQYTQSVSDWERNRYMNY >gi|297148814|gb|ACGQ02000002.1| GENE 52 58276 - 59013 526 245 aa, chain - ## HITS:1 COG:CT751 KEGG:ns NR:ns ## COG: CT751 COG0775 # Protein_GI_number: 15605484 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Chlamydia trachomatis # 14 214 9 216 289 63 27.0 4e-10 MNFDSNPNAVLNPNHENLGCDFADKLVYPFVTDENFQAFLADKDYKIAANFETFACNFSV YQVQYHNQTLSLVRPPLGASAAVQLLDWLIAYGVKEVLAIGSCGALTSGNEGDFFLPTKA LRDEGTSFHYLAPSRYINLVSPLVTQVKEQLEKRSLPYTEVTTWTTDGFFRETKAKVEQH LAEGISVVEMECAAMAACCQLRQVQFAQILYSADSLANFEHDARNWGQTRQKDVVGLACD ILTAI >gi|297148814|gb|ACGQ02000002.1| GENE 53 59223 - 60305 1416 360 aa, chain + ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 3 355 2 347 350 260 45.0 2e-69 MKKTQIKAVVASGLMGVILLTLSGCRAKRSLSQNNAKNKHSIALITDISGVDDHSFTEAA WLGFKAFGKEHKLSQGMGGYQYFQSNSEGDFVPNFNQAASAGFETLYGVGYALKEAVATV AQKYPEKNFVIMDDVIEGRKNVVSATFKSNEASYLAGVAAAYTTKTNTVGFIGGAKSTVL DLFEAGFKQGVRDTAKKLGRNITILDQYVGDFTSTDKAKAIAQSMYAKKADIIYQAAATA GNGVFQEAKNLNKTRSEKNKVWVIGVDSDQSAQGEYTNSSGKKDNCTLTSVLKGLGYAVK DIADKAYIGKFPDGQHLVYGLEHNGVSITKGNLSTNAWKASQTARSQIIAGKITVEKTPK >gi|297148814|gb|ACGQ02000002.1| GENE 54 60655 - 61833 1020 392 aa, chain + ## HITS:1 COG:L157472 KEGG:ns NR:ns ## COG: L157472 COG0477 # Protein_GI_number: 15672136 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 7 384 3 387 393 109 28.0 9e-24 MDKDKGKTVYTKDVFLVMAASFFFMFSVMFITPLINGYAISLGASSSFAGFVVGIMSVAS LFLRPIAGNITDIFSKYRLSLIGGILIAIGIIGYVITPNSELLLLFRLINGTGFVLCTVC MTTWLGALVPRSHVGQAMGFYGLMNALDMAIAPAIAIDVYHTIGYRNSFILAAVASILMI IVIQFVENHAMPKVRKNKLKKKFKLVQKNAFPVTILTALFAIPYFITQADIVIYAEQKHL DIHVGMYFVIYAIVLLVLRIVLKNFFDTVRFGVWLYVAAASMFFYLFILAIMTNDLMMGL AAIGMTVGYGIIYSVLQSTALLLAPLEEQGLASSTFYMGIDLGMSFGPIIAGFIDTYLPI QYFYLVQLILVPLVLIVYFVYRKRLNGAIDQH >gi|297148814|gb|ACGQ02000002.1| GENE 55 61881 - 62444 427 187 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|297205744|ref|ZP_06923139.1| ## NR: gi|297205744|ref|ZP_06923139.1| ABC superfamily ATP binding cassette transporter permease subunit [Lactobacillus jensenii JV-V16] # 1 187 1 187 187 298 100.0 1e-79 MGACIIKLGKVISKDVDKMLFQFLYIIPCILIVSAVLTRTFLATNTNLKVKDLLPGIKVS ILFGLFNLILVIAVKVLTSLTYTSLLIIDGVVSLIAMTLILIFVIKQHRNYAGIMFFSIG LQLIAWGNLASEDALLLLIPYLAILGFDLIFALFYGFHKEGTWFWKCSLETKNAFFKQIS PVIPFLY >gi|297148814|gb|ACGQ02000002.1| GENE 56 62735 - 65113 3158 792 aa, chain - ## HITS:1 COG:no KEGG:LBA1373 NR:ns ## KEGG: LBA1373 # Name: pepX # Def: x-prolyl-dipeptidyl aminopeptidase (EC:3.4.14.11) # Organism: L.acidophilus # Pathway: not_defined # 1 792 1 793 793 1208 72.0 0 MKYNQYALVKTDFDQKVKELTEIKFLPSDYVDYSFVDLFKYLFKQAIVEAKTDASKEAKL AEFAVNDKTSLADFLKNNPSQITADEFYCAALQLLGYHVVYDYAFDKPTSLMKKNALPIF GDITNKNDLISAFYLLLNTRAKNGQTYLDVIAGRGYFTQFYGQNKFMFFNGKSLPVFDTS KVIREVVYVESDLDTDQDGESDLLQVTIFRVPESNAGLKVPALYTADPYFGGIIDNVKRN HNVDENLSDASSWSNPQYKAMPTVPAKKPSGDTSQASEEAVHKAAYTLNEYMLARGLANV YAGAIGTRGSDGLRITGAPEETESAKEIIEWLHGDRIAYTDRSRQTEIKADWCNGNVGMT GRSYLGTLQIAIATTGVAGLKTVVSEAAISSWYDYYREHGLVVAPEACQGEDLDLLAETC QSNLGDAGSRLKVQAKYDQMQKDLLAKSDRTTGQYSDFWEARNYRHHTDGIKCSFISVHG LNDWNVKPKNVYKLWQKVSKLPIASHLFLHQGPHYNMNNLVSIDFTDLMNLWFVHELLNI ENGALTQWPKVMIQDNLEADTWHEEENWTDDGNETVYFLNDDMTLNKNLPGHTKKSFTDL GGKEFKAAKISESAWEYQFICGEEKWTKASLRFTSDEYAHPITINGRPRVRIRVSASLAK GQLSCALVELGKRKRLTATPKFIMPGGQELGYRFGVDTLQEFMPDKETKAKLICKGHMNL QNYQDMKHPSQIEANQMVYLDFLLQPTYYKMPRGSRLALIVYSTDQAMTKRPLEEETYTI DLAHSELSFWQK >gi|297148814|gb|ACGQ02000002.1| GENE 57 65125 - 65481 292 118 aa, chain - ## HITS:1 COG:lin2520 KEGG:ns NR:ns ## COG: lin2520 COG1393 # Protein_GI_number: 16801582 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 116 2 116 117 110 50.0 9e-25 MKFYGYRRCSTSNKAQKYLDEHNVDYEFVDITQNPPTEAEFQTWLSKYQDRGLRYFFNTS GQHYRQLHLKDKLDSMTLEEASKLLASDGKLIKRPLITDGENLSCGFKEDVYQKLWLK >gi|297148814|gb|ACGQ02000002.1| GENE 58 65861 - 67288 1368 475 aa, chain - ## HITS:1 COG:no KEGG:LSA1108 NR:ns ## KEGG: LSA1108 # Name: not_defined # Def: putative chromosome segregation ATPase # Organism: L.sakei # Pathway: not_defined # 36 474 3 451 453 345 52.0 3e-93 MALFKKNKKQNIDNSKDSSVNSTEKSSSKIQTKSSIFKLFHIKDLKKEIVDLTKENQLLK EKADIRLSIKQMQPEQLDNLIKDKNEELNKLDTIIIQKKDKIKNHDKKIARLTSRLKELN AKIIDVSDEIKYESYGLYKPKYNFANSSTYKGKLSEIRANQKLMIKNEVAAEIIHQMTLN DSVSQGKKLQKKNIKQLLRSFNGECEAAINKVTKSNFTTIEKRINRSFEQLNKLNEENSI RITAEYLDSKIDEARLALEYALKKEEEKEILREQRQREQEERQLQRELENERKKYEKDES HFQKAERLVEEKIKQTTNESELISLKNELQQLQAKLATIQEKKEKLENRAANPTAGYVYI ISNVGSFGKDIYKIGVTRRLDPMDRINELGSASVPFKFDVHALIFSDQAYQLEAELHNYF DKQRINKVNRRKEYFNITINEIKKVLKEHKDLTFDFHEVPEASEYRDSLLIEKNN >gi|297148814|gb|ACGQ02000002.1| GENE 59 67561 - 68523 1174 320 aa, chain + ## HITS:1 COG:BH3916 KEGG:ns NR:ns ## COG: BH3916 COG1482 # Protein_GI_number: 15616478 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Bacillus halodurans # 1 317 2 315 315 314 49.0 1e-85 MEAIFLEPYFRTKLWGGRKLETLFNYQIPDGKVGEAWIISGYRDDASHVINGKFKGMSLR DLYQKHPELFANPEEKEFPLLVKYLDANDNLSVQVHPDDEYAAIHENDSGKTESWYVLQA DPGSYLIYGHHAKSRQELADMIHEGHWDDLLRKVPVKKGDFFYVPAGTIHALTKGIVVIE TQQSSDVTYRLYDYDRVDQKTGQKRELHTQKSIDVTTVPHKDPKLDIKKEKSGDAIITTL LNKPVSPHFYLAKIDLDGKVKFTMNWPYQLFSVISGSGKLCLPDKEYELKLGDNFILPTG SYDFTFSGKLSMITSAPIKK >gi|297148814|gb|ACGQ02000002.1| GENE 60 68537 - 68929 399 130 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00750 NR:ns ## KEGG: LCRIS_00750 # Name: not_defined # Def: integral membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 129 1 129 129 174 64.0 9e-43 MIYVACGLIMMIVGLLWFLVPAKRPDRLYGYLSYLAQTNKDSFQFAQKMGARYNFLVGLV QFLLGLAIHFLGGDKYFLVWLLTFVIFIIIPFALTEKSLQKFLQKRHELPHDYVKPDEVK RQKVKGFRDL >gi|297148814|gb|ACGQ02000002.1| GENE 61 68929 - 69651 917 240 aa, chain + ## HITS:1 COG:lin1542 KEGG:ns NR:ns ## COG: lin1542 COG0745 # Protein_GI_number: 16800610 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 237 1 228 228 229 51.0 3e-60 MELNILMVEDDSSVAEMMELFFKKEQWNVDIARDGLEAVDKFKERPDYYDMITLDLNLPK KDGIQVAKEVRAISESVPIIMLTARDSESDQVLGLEIGADNYVTKPFSPIALIARIKALH RRAALENNDEDRKAKGDFDIVTNTLKISKIRREVYFLDKQIDGLTPKEFDLLYTMAQKPK QVFSRDKLLELVWGYEYYGEERTVDAHIKKLRQKLEEVGPQIIQTVWGVGYKFDDSQVNK >gi|297148814|gb|ACGQ02000002.1| GENE 62 69669 - 71123 1389 484 aa, chain + ## HITS:1 COG:BS_yclK KEGG:ns NR:ns ## COG: BS_yclK COG0642 # Protein_GI_number: 16077444 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 470 11 464 473 287 36.0 3e-77 MLAFLAIILTSTAIVGFSVINFASNQAYQNTYQRLEGYASSLGELATEQGPDGLNNSSSN DLIDSHFLTKLQIVMQSDDLQIRVFNGKNKQLYPKMGPKVKLPKNIWNTLKSGNEVRIKN DHDQKETYFSSKDAYTSVIIPWFNGSKMVGAVWIGARVKNVEQPVNLAKRNLISAFVVTL IVSLILSYLISYYSLVKIKRLSKATKKVAAGDLNVQINHQDHDEIDDLASDFNSMVKALK KSAEAVKAQERRRDQFMADAAHEMRTPLTTINGILEGLEYDAIPEDSKPKSYQLMHRETN RLIRLVNENLDYEKIRNNQISLIKTNFDAAVPLNDLKTQLKTNAEKENDVIKLEIPEKLP VYADHDRFTHIMVNLVQNAIQFTQNGVITVSAKRLKHGTEIFVNDTGIGMSEDQTKYIFE RFYKADPSRAKLGGKGESGLGLAIVLSLIKQHGGKISVDSTPGVGSTFSVTFFDKGFEEF SKED >gi|297148814|gb|ACGQ02000002.1| GENE 63 71691 - 73997 2322 768 aa, chain + ## HITS:1 COG:no KEGG:Lm4b_02044 NR:ns ## KEGG: Lm4b_02044 # Name: not_defined # Def: membrane associated lipoprotein # Organism: L.monocytogenes_Clip81459 # Pathway: not_defined # 346 552 221 420 690 102 39.0 7e-20 MRKTTLGLASVLLSTTLYLGTNTAITHAAETNGQSSTESSTSSSATSSQADSTASSSTSS QESSSSSTSNQTLVSPAKTQVADANNLTDSEKAAVISAIKAVNSDVKSVIVDNDGTAHVT LSDGQTVKTLNSSETIEVVSSSSTSQNATSSANNESSNSSTTNKSTNELTSENVAQEDRA SNDAVPATNSNTTNQTNIDINNVDAKKFNWYTTTDKTGIVITKYMGNDSTVVIPNAYDFK VAGKLNAATRVSITWDAIRQIANNHNTHTIVFSRNTDGSSLGKIALTIGDYKKLSADTVA KELTYDTSKGIWVGAFSPYSVVKKSNGQIAIQMDTSKTNTWVTAIDASSLDTTGLTDTTF MFSGLTNLKTLNVSTWNTSQVKDMTAMFYGNESLTNLDVSSWNTGNVTKMAGMFQNDFAL KSLDVSGWNTSNVTSIQNMFRGTLSLSGLDVSKWNTSNVTDMSGTFWDAPGIYHLVDTGR TGSQTSKNLMYTTGDNFKNWNVSKVTNFQYMFGLSNSSPFVQQNTGNKQVLTYMDLTNWQ LANGVDRSYMFQYDGNTGYNSTLGLVLKTSANSLLGMDYASMNRSNRIYYSVVKDSKSYD NEASFTKYVDYTPNVAYGGGGNLVNNITKMLQTVTGYSNAIVNNELDPKDGTTSNSLVKA GLTQDSNYTSDEDYIQQMLMADKEVITNVDFSKLKAAVDDQEATHESDAYKKASAEKQKA YDDAVEAGKSVLSNDLAYQTDVDDATAKIINTKALLSQNVDKSAFKSC >gi|297148814|gb|ACGQ02000002.1| GENE 64 74164 - 80001 7353 1945 aa, chain + ## HITS:1 COG:no KEGG:SaurJH9_1495 NR:ns ## KEGG: SaurJH9_1495 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_JH9 # Pathway: not_defined # 309 1939 5553 7158 10624 242 26.0 1e-61 MPSDALITNKDAGSAEGVYGSKQSNLSDNDYYVVSIPVNIVTADGKPYTFSSSDTTGFAV RGTTKLGSGTVIAGKSLSGVTIPSSGLKFNFFAYTAKGTNDQAYALQNDNVTVNNDSTGT SGFLAVTSFSTQYGNTKYVTITVYKRPNAVSTDIQKDTNISDAAAFAKKYVSNYDEVSSS VTKWSWYNSAPSTGTVGKQQGNLVATVNGSANSWTTGTSDISVPVTLNVITISKDALQKA VDAQPTTQGTAAYYNADSTKQNAYDEAITAGKAVLADPNATQQQVDDATKAIETAKGNLD GKETNKADLQTSIANANTAKSNGTYDQSSSDKKSALDQALADAETVNNKQNATQSEVDQA KAALDQAIANLDGLTNAKTNANTAIDNMQNLNDAQKTAAKNAVSVAQTVADVTTAQNNAQ TTDNNMKSLSDDDNLNVDTTKDPYLNADSDLKTAYDNAKKAADAILVKSTGQSVGASEDP KHVQDIKDALDNAASALNGAKKLSDAKNNAATDLSGLTKLNDAQRKTAQDAVDNAKTVAD VTAAVNAAKNTNTNMGDLADDKNYANADSIKQSSNYKNADSDKQKAYNDAVQAAQDLLDK SKGTSTGNVTTDPDAVKTAKQKVDDAYAALNGDNNLTAAKNNAKAAIGDLQNINNAQKAS AISAVENAQSIDDVTIAETNAKSTDDNMKSLHDDTNLNLDTTADPYLNADQTLKDAYDAA KKAADDVLAKSTGESVGASADSAHVATLKKNLDDAASALNGTTKLSEAKTNAATDLSGLT NLNNAQMQTAKKAVANAKTVADVTAAVNAAKNTNTNMGTWAADENYTKADQIKASLKYTN ADEDKQKAYTDALDKVKTLLDKENGSSTGVVTTDAQAVQEAQTELDNAAKALNGQTKFDA DKQKALDDFDANYPNLNNAQKATAQKRISDATSPAELTTAQSTNSDLNDKMGQLKTVAAT VSDTKATDNYNYADPALKSVYDTTSDKVSATVAPTGDDLNSDQVTALINQEATDKAALNG EERLKAKAALQTAHDTGLAGKTTDPKYYNATQTPKANYDKALTDAESTLASENATLADYQ AAKKAIDDAYGKLDGQATNKQELQSRVSDADNVRQSDDYKNASDDARKTYEDAIKAGQDV LNNANATQVEVNTARDNIDKAKQALTTSANAAQSKVNSNVKATPVGDKTNLTSEEQDSIK KAVEDANKDNDVKSVTVDPKSGEVTVEFNDGSKATIPASKTTTDTNKTRLKNDLDDSKTD ATKAIHDKASTATKEAYDKAVSAGQTVFDNDKASQKAIDDAADAIENAKKAMEDSANAAQ SKVNTNIDKTAVGNKDALTSDEQAAVKKAVEKGNPDTTVSVDDKGTATVTFNDGSNATIA PEYTLKGTDKSSLVKELNNESAVKNTPTVTLQDSEDKTPIQIYQRASDEARKVYDDAIAK GKEVNQNTTATQEQIDAATKAIQDAVKGLVLSSTNARLNFDFSFDKTPVVDPSNVSEAEK QAILDKIAAKNDNIDKSKSTVNADGSATIVLIDGSSVTLTPDQTIKDVNKDELRQDIATA DKLQADTTNYQKASDEARSNFEKALADAKEKEAGKFSQADVDTSDANLKKAISALQTSIN SASANNPSVKTPVGRGRDINDDEKNEIEKAVNDANPGNKGVEVNSDGSATVTLANGGKVT IPASATTQDTNKTVLKTALDNGNAAIKGSDFTNASTTAQEELKKAVQDGQSVFDNAGSTQ KAIDDATEAINNAKAALADSAKSAADKLDVTVEKTQVGNKSALTNTEKQSVKDNVTDAIK AKTPDAEFTVSVDDTGNATVTFKDGSKGVIGSDKTVTDVDKSGLQNDVNEKPSVEKTSAY YNASDDAQKAYNDAIADGQAVLDNPTATKDEVDAARANIANAKQALTGQKTDKTDLESSI DLANGFKDAGDTYNNASDERHLIRH >gi|297148814|gb|ACGQ02000002.1| GENE 65 80340 - 83669 3992 1109 aa, chain + ## HITS:1 COG:no KEGG:FI9785_83 NR:ns ## KEGG: FI9785_83 # Name: not_defined # Def: putative secreted protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 230 946 632 1330 1423 166 28.0 6e-39 MQTQKDLADSAKDTSSYFNASDDKKTAFDKALADAEAILTGNKKDTASQTDVDNAKSALE QAISNLDGKATNKKPLEESIALAKDLQNTDVYNNASDAQREALSEALSEAEGQDADPSAT QTNVDAAKAKLDQAFEAFSGKTDASNVKMPAKTPVPAAHKTALIDDEISAVKSAITSANS NVKIVDVDTEGNATILFNDGSKASLDASDTVTDVDKTALQTSDEAAQGLKNSSSYFNASA DKKQAFNDALAKADSILNGQEKDTATQAEIDDATQKLNDAARALDGKATDKSELEGSITV ADAIKDLDTYQMASDKQKSDLETALKNAKDIDADENASQESVDNAKKALDAALDAINNSQ ARDTKAPETKTEIHNPDSFSKDEQQAIKAQVQKDNPSATDINVDDQGNATVTYGDGSHTV IKGEENVKDTAMVDPLTNTGDADAELNSFSKTPVQDPDKLTDNEKQQVVSNIKNANSDKH IASVDVKDNGRTIITFEDGTQKELDRSETITYPDHTSGEALTFDDAQADQSLNNFDKVPV NDPDNLTDSEKTQVAENIKKSNSDKHIANVEVKDNGRTIVTFEDGTQKELDRSETITYSD HTSGEALTFNDAQADQSLNNFDKVPVNDPDNLTDSEKTQVAENIKNANSDKHIANVEVKD NGRTIVTFEDGTQKELDRSETITYPDHTSGEALTFNDAQADQSLNNFDKVSVSDPDNLTD SEKNQVAENIRKANSDKHISDVEVKDNGQTIVTFEDGTQKELDRSETITYPDHTSGEALT FDDAQADQSLNAFDKVKVQDPDKLTDSEKNQVAENIKNANSDKHIADVEVKDNGRTIVTF EDGTQKELDRSETITYPDHTSGEALRFDDTQAEQSLNVFDKVEVSDPDKLTDCEKNQVAE NIKKSNSDKHISDVEVKDNGRTIITFEDGTQKELIPAQTIVEKPTETPVTSASVNKDNLK KEMAKKDQIHTSVAYTNGSAVNKKAYDETLAKAEAVLADENASQEDVDAALAGLISASQK LDGKESVPTSTEKDDTSNETSKSNNLSKLSVTTTSKVTSSKKALGKKLGTNVDKLPQTGS RESEVSVIGLGLLTLALAVLGFKKKKDEQ >gi|297148814|gb|ACGQ02000002.1| GENE 66 84243 - 84518 109 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|260661092|ref|ZP_05862006.1| ## NR: gi|260661092|ref|ZP_05862006.1| predicted protein [Lactobacillus jensenii 115-3-CHN] # 1 91 51 141 141 114 98.0 2e-24 MTSQLELATRSLDRTITNKKTLEDNILIAEEAQDLDKYLNASEQIKNNFDKALKDAVVQR DNSDASQVNVDQVSQALNQAIESLDGQATDK >gi|297148814|gb|ACGQ02000002.1| GENE 67 84561 - 85097 58 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850880|ref|ZP_05556269.1| ## NR: gi|256850880|ref|ZP_05556269.1| surface anchor protein [Lactobacillus jensenii 27-2-CHN] # 1 178 1 178 178 277 100.0 2e-73 MGDVYDAASESERNQLNEALQHATQTLDESTSQAEVNQSEKELETAFWTFGENNYGSASN SEPKITDSKAETVKQDEKKIIPESELTQSISQLSKVKEISKPKVEKEALNDKMKIQKKQV ISEGKVNSKLHLTFKFSRIADYAYSNGRLKENNKTKRQACYCLSFYFGTLLNGRFIKK >gi|297148814|gb|ACGQ02000002.1| GENE 68 85508 - 90121 5342 1537 aa, chain + ## HITS:1 COG:no KEGG:ROD_29581 NR:ns ## KEGG: ROD_29581 # Name: not_defined # Def: large repetitive protein # Organism: C.rodentium # Pathway: not_defined # 654 1312 243 926 1637 190 31.0 5e-46 MLSKNNKKQYDLKHANGRQHFSLRKTTLGLASVLLSTTLYLGGNSGQLVHAAEDTNSTTV SSNADAISTEEAKTTSVDKSALQNAYDNALNVQKSDVKYTNETDSTKKSAYDSAVANAKS VLDNASATSEDVTNAVNELNTAYNSLTGVANTTTTANDTTKTGAGLYSDEDKAKEQASNL TTESSTISRKLCTDFLKKYNVTNGDRYQVDPKGSGVFSSGNIDKWHDAVNTKNNKYYNAS ATGNITITQADYNQNDNTITWTVTFNPNNGVSYSGSGSPAGTGAGGSGSGSFSTATSVYA ISISKDLAVQSIKYGWNTLTDATENYNKSQASQSAVAITSSETNNAANEMTVTSGETTAY NSFKKALVSGPLFNYISNGDIGTNITFDPYQNGKTANSKKNSVGFTVQITTSVDTNNLGA FTGLVAGESYITPYLYSQMGDNAFKTPRVLGVYRAANITVTNKGTEGITSEAIPVKVTYN GSETVPSDVTSITYTINKNADNLKKVNASKYANATNDSIQVTTNDWNKGYYDTESVSYPY YYDTNTLKDDLLNSNALSLSNISVNGSSSKIYNTSTSIQNGALVINITAWDQPATGKEIT VEKGTTLTPDLVAEKSISNYKQLKAEGYTFSFKNDVDTSKEGTGNYGLLIKYPDYTEANK HNSVQSITVHVTDSNLDNAKKAANDAIDKLNNLNDAQKAIAKAAVKAATTVDAVTAAQTN ATTTDTNMGNLSNDDNYKSAESIKQGSNYKNADTDLKKAYDDAVNEAKALLDKSTGTSTG DVSKDPVAVEAAKKKVDEALAALNGDSNLAKAKEEAKKAINQMGDLSDADKEAAKANVDK ATEISNVNTAKSDAQDLNDAKKAAKEAIEQMSDLSDADKTAAKSNVDNATNIAGVNTAKQ DAQDLNNAKKAAKEAIEQMSDLSDADKTAAKSNVDNATNIAGVNTAKQDAQDLNNAKKAA KEAIEQMGNLSDADKTAAKSNVDNATDIAGVNTAKQDAQDMNNAKKAAKEAIEQMSDLSD ADKTAAKSNVDNATDIAGVNTAKQDAQDLNNAKKAAKEAIEQMSDLSDADKTAAKSNVDN ATDIAGVNTAKQDAQDLNDAKKTAKEAINKLTNLNKAQKEAAIAQVNAAETVAEIQPIVE TATALDGKMGDLKKAIEAADAKKSTTAYTQASDTKDFDDALTAANTLNSDKGDNEDAAAV QAKIDALTNAKLDGDKQLQDAKDAAIAKINALENLNKAQKQAAIEAVNNATTVAEIQPIV DTVTTLDGKMGDLKKAIEAADAKKSTTAYTQASDTKDFDDALTAVNTLNSDNGDNEGAEA VQAKIDALNNAKLNGERIALQKAVEVAIAKIEGINPDYIYYNSDSELQSAFKEAVAKGKI LLEQRDASDENYQLAREAIEAAMKALNGQLTDKTALQTSVSQSGEVHKSVAYLNASEAAK KAYDDALANAEAVLADKNATQADVDAALAKLNAALQKLDGKESPAKPTVKKNTVKLGTNA DRLPQTGSHESVASEVGLGILALGLAALGLVKKRKED >gi|297148814|gb|ACGQ02000002.1| GENE 69 90307 - 91572 1580 421 aa, chain + ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 2 410 4 406 408 422 53.0 1e-118 MTKKFTPILLGSDINVYGMARSFHEAYGIKVEAWAGSPLAATKYSKIVDVKIYPGFSEDP EFMNVMKKKIEEYKNHEEPVILIACGDGYAELLAKHKAELSEAFIVPYIEYDLLKKLISK EGFYEYAEKYGLPYPGTKIITMDEYKAGNYLTIPFNYPVELKPEDPVSWLDCQFEGRKKT FTLKSEAELKDIVTKIYTHGYKADLILQDFIPGDDSHMRVLNAYVDKNHKVKMMCLGHPL LEDPTPQSIGNYMAILPEFNQDLYDQVQSFLEKINYTGMANFDIKYDERDGKFKFFEINL RQGRSSFYVTMNNCNLARWYIDDYVEDDLANRETVYANKNNNDHVLWLGVPKKIFTEYAV DNEAKHEATSLIEAGKYGTTVFYEHDRSFMRMLLMKYMFHNYIGRFKKYFEVNKGQYFEK K >gi|297148814|gb|ACGQ02000002.1| GENE 70 91624 - 93822 1498 732 aa, chain - ## HITS:1 COG:lin0927 KEGG:ns NR:ns ## COG: lin0927 COG1368 # Protein_GI_number: 16799998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Listeria innocua # 10 655 10 642 653 563 47.0 1e-160 MRKIQEFNFTWIQKRTGFLALLTILYTIKYIFAGYVDFNLGLSDPYQHFIMWTSPIATSI LLLSLALYIKKPLASYITMLVIDFINTALLFANIIYYRQFTDFLTIKTIANTSKVSQGLG KSAVSLLHFDDIFIWLDLIIIILLLIFKIIKIDQKKYSFSNSFAVTSFACFLLGLNFFLS ETSRPRLLRNTFDRVYVVKYLGITSYTAYDAVKSLQSGTNSKTANAEELNKILAFTKKNY ASPNIQYFGKAKGKNVIIIHLESFQQFLINLKVNGKEVTPFLNSLYKDKNTLSYENFYNQ VGLGRTSDAENMLETGTYGISDGSLFTSLGSNNTFQAAPQILRQSGYTSAVFHGNIATFW NRNDVYKNMGYNYFFYKNYYSSNKEDSSGYGIKDKLLFAESIKYLEQMQQPFYTKFITVT NHIPFDLDDEDKDPDFKTTNTSDATVNGYFLTAHYLDSALKEFFDYLKKSGLYKNSMIVI YGDHYGLSSSDYNAISSVLGKTSDWTSYDTAQFQTVPFMIHMDGLKGGIKKEYAGEIDVL PTILHLLGVNTKDYIQFGTDMLSKEHKQIVVFRNGTIVTPKYTIINGKATSGNVYDTKTG KLIKTFTNTQKKELRKLVKYESESLHYSDTLNNRDLLRFYTPKGFIPVTPTQFNYITEFQ QMIKLREQLGKASTSLYSQHKGTTTNLYQTDAPELKGRTTEITTVPESISGSASSSSSSS TSSSNQSSSSSK >gi|297148814|gb|ACGQ02000002.1| GENE 71 93953 - 94576 548 207 aa, chain + ## HITS:1 COG:CAC0829 KEGG:ns NR:ns ## COG: CAC0829 COG4767 # Protein_GI_number: 15894116 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Clostridium acetobutylicum # 65 202 15 153 308 71 35.0 1e-12 MMIFLGPLYSFLAKHLAKNINHFALVKLVMISLDKSIFYFLIFAFLRLLWLLLVRKRRSH FSESLVWIFTFYVMFLLATTTFRESYFPWQLAFNWNRPLSDINLIFLKETWKLTQGVTLF DFIYNCFGNILCFMPFGLLFPNLIKKRTCFLQTAIAGMCLSLFIETMQFGLNTGVSDIDD VFFNTIGAILGYLAYIFIKKVAHSKTL >gi|297148814|gb|ACGQ02000002.1| GENE 72 94647 - 95984 2172 445 aa, chain + ## HITS:1 COG:L0012 KEGG:ns NR:ns ## COG: L0012 COG0166 # Protein_GI_number: 15674150 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Lactococcus lactis # 1 445 1 448 448 593 65.0 1e-169 MSLVHFDSSKLAPFVHDNELKEMQAMVNAADSELRQGTGAGNDFRGWLDLPVNYDKDEFA RIKKAAKKIQSDSEVLIGIGIGGSYLGAQAAIEFLNSAFYGKEDNGYPTVVFCGNSISGS YLADLINWVGDKDFSINVISKSGTTTEPSIAFRILKAKLIEKYGKEEANKRIYATTDRAK GALKTEADAEGYEEFVVPDDLGGRFSVLSAVGLLPIAVAGGDIDKLMEGAAKAREDYTDT DVTKDSPYQYAALRNILYRKGYTTELLENYEPTLRMFGEWWKQLMGESEGKDQKGIYPSS ANFSTDLHSLGQYIQEGRRNLMETVVRVENPRFDVEIPSDKENLDQLNFLAGKTMNYVND RAYEGVVLAHTDGGVPVMTVNIPDQKELTLGYLIYFFELAVGISGYLNGINPFNQPGVEE YKRNMFGLLNKPGYEELHDDLTKRL >gi|297148814|gb|ACGQ02000002.1| GENE 73 96100 - 97449 1395 449 aa, chain + ## HITS:1 COG:L180636 KEGG:ns NR:ns ## COG: L180636 COG0477 # Protein_GI_number: 15673521 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 3 436 21 452 457 249 39.0 1e-65 MTAILMVAVLAFLGILTETSLNVTFPEMMKDFKVSLDTIQWTTTGYLLAIAILMISSSYL NKRFTARAIFLFASGSFLIGSLLCLFSSNFEIMLLGRIISSCGAGLATPLMFNLVTELMP REEIGFYMGLAGLVLAMAPSLGPSFGGIIAYYFNWRVIFSISSLLAIIVILIGLRVIGKY HEVSHPSFDWVRYIVISLFMVDFTLMINHLSSGFNFQFFLYLVFAILSMWLFIHLSKNSQ KTLINLAIFKDAAFVYAMLAFFLIQFINIGVSFVLPNYVQIVNGASTLAGGLMLLPGSVI FSLMTPYFGHLYDEKGAKLPLYLGGTFLLIAVILLAILGMKLNPWLVGIIYSLLTCGMRM AFNNTLTLGIESSPKQLHADATAIMQTGQQFAGSIGTSVLAAIISFSQSTSHGSEAFLMA QGCEVAFIFVTFIAILIMICYWQLFTKVN >gi|297148814|gb|ACGQ02000002.1| GENE 74 97541 - 97780 347 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850887|ref|ZP_05556276.1| ## NR: gi|256850887|ref|ZP_05556276.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 79 12 90 90 135 100.0 6e-31 MENKMTHSASILNARLLWKIVWVVVYGITAFYTYLSFTDMAHMMKWMMYAMAWMAGGMLA EAVVGLIYHCCGKDGNGCH >gi|297148814|gb|ACGQ02000002.1| GENE 75 98213 - 99220 1174 335 aa, chain + ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 10 327 10 308 328 204 38.0 3e-52 MSDFFRTQYLIESMVSERIVPGVNYAFIKNNQVFKSTIGFSEIYPSIKQLSPYAEYDLAS LTKVLGTTNVFLKLYQEGKLNFNEPLGDFLPEFQNQPVRLFHLLTHISGIRGWIENRDQL PASDLLEAIKNLPVTDEFETKMRYADTNFILLGLVLEQIYHKNVQDIIMDEVIKPAGLQH TTFKPAVEDCVPTAVVDGKLLQGIVHDPKARVLGKHCASAGLFANIDDLIKLTFGYLGRN NLLPFSQELTSELFAIKSNSKKVHPRSWGWDLVFDPNDQHPLIFHTGFTGTFILIDRRKQ TAMIVLTNRVHPTGHNQIFLTMRQRIVDSFLAENK >gi|297148814|gb|ACGQ02000002.1| GENE 76 99249 - 100604 1452 451 aa, chain - ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 1 440 1 438 449 439 48.0 1e-123 MNLKSGIAKLSGKSSHWVLHNIFKGGTSFPGKLAMRIDPNILANLAKDYETIIVTGTNGK TMTTALIVNALKEKYGEILTNPSGSNMQQGIVTAFLSHKAKRHGRKLAVLEVDEANVKRV TELLHPKAYVLTNIFRDQMDRYGEIYTTYDKIIDGIKLAPDAVVIANGDASIFSSVELPN KKIFYGFETKADEAQNDFKASVNTDGVLCPKCNHIIHYHAISYANLGDYFCPNCGFKRPN LSYRLKEITERTPNSIKFRIENTEFAIGIGGTYNIYNALAAFSVAREFDVSEAEIANAFA KNKRIFGRQELISYADKEINLILVKNPVGLNEVLSLLNTEKSDYTLATLLNAHHADGIDT SWIWDADYEGLDKSKVKQVLVGGERHHDMGFRLEVAGFDPGTMEVTPDDNTLLTRIKEAP TKKVYILATYTAMLALRSTLYDQKILKNKIN >gi|297148814|gb|ACGQ02000002.1| GENE 77 100743 - 101348 645 201 aa, chain + ## HITS:1 COG:L184871 KEGG:ns NR:ns ## COG: L184871 COG1435 # Protein_GI_number: 15672575 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Lactococcus lactis # 1 195 1 187 189 254 62.0 1e-67 MAQLFFCYGTMSSGKTIEILKVAHNYQMQGRKIALMTSGKDDRSGKGIIASRVGLNSKAT PIEDDMNIFNYVKKQNEKDIANGDGAIACVLIDEAQFLYKHHVLECAKIVDELHIPVMTF GLKNDFQNNLFEGSQYLLLYADKIEEMKTICHYCGRKATMVIRVQDGKAVYEGAQLQIGG DESYYPVCRFHYNHPGQKRED >gi|297148814|gb|ACGQ02000002.1| GENE 78 101383 - 102471 1777 362 aa, chain + ## HITS:1 COG:L0373 KEGG:ns NR:ns ## COG: L0373 COG0216 # Protein_GI_number: 15672577 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Lactococcus lactis # 7 357 4 355 357 406 61.0 1e-113 MDKVMAQLEGLVARYEEIQELMADPEVINDTKRYMEISKEEADMREVVQKYRKYQEDQKT ISDNKEIIENESDEDLVEMAKEENSDLEKEVAELEEEIKILMLPKDPNDDKDIIMEIRGA AGGDEASLFAGDLLRMYEKYAETQGWKISVIDEETTEVGGYKHVAIMITGDKVYSKLKYE NGAHRVQRIPVTESQGRVHTSTATVAVMPEYEQVDIDLDPKDIRVDVYRSSGAGGQHINK TSSAVRMTHLPTGIVVAMQDQRSQQQNRAKAMEILKSRVYDYYESQNQASYDEKRKNAVG TGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEIISALIVHYQTKQLEELAED NA >gi|297148814|gb|ACGQ02000002.1| GENE 79 102464 - 103306 302 280 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 23 277 39 289 294 120 34 1e-25 MPKTLKQLVQLGQMRAPEASIEDISYLISERAGLTPSEFQLKQDSEASSKLEKQLQKDFK KLARNVSPQYILGYAWFLGYKIMVQRGVLIPRFETEELVEWALDHLHDGMRILDLGTGSG AIMVALAKEASKKGIKDLTLYASDISDSALRTCEENFLTFDLDVTVRKANVLIGLEKFDL IISNPPYIRPEEKNLMDSNVLQNEPEEALFGGKDGLEFYRRFAKQVREHLTDEGQFFLEF GFSEKDDLAKLFTEELPDFKVEFKDDLAGKPRMVYGKWQK >gi|297148814|gb|ACGQ02000002.1| GENE 80 103306 - 104307 1322 333 aa, chain + ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 13 327 20 339 345 261 45.0 9e-70 METQILKKDQIDQAVEFLKNGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLI VTVSDEDMMKQYAKFIPERAEKLIKHFWPGPLTLLLLVKEGSLPTVVTGGLKTAAFRCPD DELTHELISKLGYPIVGPSANTSTKPSPTTAEHVYHDLKGKISAIIDGGATEVGLESTII DLSVETPIVLRPGQITPEELSKVLGEKVLINTGKVSDKTIPKAPGMKYRHYAPSAPVWVV DDVKDFSKISYTSDTAVAALDSVLDTLDLPAENKFSLGKDLKDADHNLFSALRFFDDEAS IKTIYVQGFDEGEQSLAYMNRLNKAAAGHHYKN >gi|297148814|gb|ACGQ02000002.1| GENE 81 104393 - 105022 888 209 aa, chain + ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 298 69.0 4e-81 MGKFTVLNHPLIQHKLTIIRKKDTGTNEFRQIVGEIGGLMVYEMTRDLPLKNVEIETPIG KTTQKELAGKKLVIVPILRAGLGMVDGVLQMIPSAKVGHIGMYRDEETLKPHEYFFKMPQ DIEERDVIIVDPMLATGGSANMAIDALKKRGAKNIRLAVLVAAPEGVKNIQEAHPDVDIY AAAEDEKLMDNGYIFPGLGDAGDRLFGTK >gi|297148814|gb|ACGQ02000002.1| GENE 82 105154 - 105870 773 238 aa, chain + ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 2 238 3 237 238 164 41.0 1e-40 MEKPEILRLFGLTFNVSNILGGTLVALIVFGMCFWLARKVELRPGKKQNVLEYIIDFTDG IVKSNVEDEDAQKHLSLYAFVLFLFIWWLNQLGLFLEVKDMNGLMLFKSPTADPTITMTM AMMTLLLSYNFGVQKFGTFGYLKNYARPLPFFLPINVMEEFTNFLTLSLRLYGNIYAGEV LLTLIGNDFAHSFGIGTIILSAPLTIIWQGFSVFIGSIQAYVFVTLSMVYIGKKVTQE >gi|297148814|gb|ACGQ02000002.1| GENE 83 105892 - 106107 402 71 aa, chain + ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 1 68 1 68 70 59 57.0 1e-09 MKFLAVAIAAGLAALAASYGNGKVISTTIQGMARQPESASELRSTMFIGVGLIEAVPILA VVIAFLIFFLG >gi|297148814|gb|ACGQ02000002.1| GENE 84 106146 - 106655 722 169 aa, chain + ## HITS:1 COG:SP1512 KEGG:ns NR:ns ## COG: SP1512 COG0711 # Protein_GI_number: 15901359 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Streptococcus pneumoniae TIGR4 # 15 169 9 163 164 96 38.0 2e-20 MTNILFAAEKSDLYLGDTIYYLILFAILLLAVKHFAWGPVTDMMEKRRQQVIEDIDKAAD ERKKAEILAGEREEQLKSSRQEATQILSTAKTNAEAAGKDILNQANEEAKNIREKAKADA IQAKNDALNEAQAQVADISVQIAEKVIAKNLSAADQKDLVDQFIKGLNK >gi|297148814|gb|ACGQ02000002.1| GENE 85 106655 - 107203 739 182 aa, chain + ## HITS:1 COG:lin2676 KEGG:ns NR:ns ## COG: lin2676 COG0712 # Protein_GI_number: 16801737 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Listeria innocua # 7 178 6 177 179 89 32.0 3e-18 MALSREEISARYGAALFGYCQDNNSLDNVYSELQVLKTAILDNPRLSEFLSSPVYSMEEK KQLLKNISADFSQELQQFLELLLDYGRFAVLPDIVNQFNMRYNKLNNIAFGKVISAVKLD DEQLHKLGQAYAEKYDLKELKLTNQVDPSIIGGVILEVEDYIIDGSVKNKLKKIRAQLVE NI >gi|297148814|gb|ACGQ02000002.1| GENE 86 107218 - 108732 1768 504 aa, chain + ## HITS:1 COG:SPy0758 KEGG:ns NR:ns ## COG: SPy0758 COG0056 # Protein_GI_number: 15674806 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 496 1 496 502 766 76.0 0 MSIKAEEISSLIKKQLEHFDDKLDIDEVGVITYVGDGIARAHGLNNVLANELLEFENGSY GIAQNLETNDVGIIILGKYDNIREGDRVKRTGRIMEVPVGEALIGRVVNPLGQPVDGLGE IKTDKTRPIESKAPGVMDRQSVNQPLQTGIKAIDALVPIGRGQRELIIGDRKTGKTSLAI DTILNQKGQDVICIYVAIGQKESTIRSQVETLKRFGAMDYTIVVEAGPSAPAPLLYIAPY AGTAMGEEFMYNGKDVLIVFDDLSKQAVAYRELSLLIRRPPGREAYPGDVFYIHSRLLER SAKLSDKLGGGSLTALPFIQTEAGDISAYIPTNVISITDGQIFLQSDLFFAGTRPAIDAG ASVSRVGGSAQIKAMKKVAGTLRVDLASFRELESFAQFGSDLDQATQAKLNRGRRIVEVL KQPLHEPLPVEKQVLILYALTHGFLDSIPVEDVARYEHELDSNFESSHADLLKTIRETGD LPDEDEMNEAIKSFNEGFTPTSKN >gi|297148814|gb|ACGQ02000002.1| GENE 87 108743 - 109705 1283 320 aa, chain + ## HITS:1 COG:SPy0759 KEGG:ns NR:ns ## COG: SPy0759 COG0224 # Protein_GI_number: 15674807 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pyogenes M1 GAS # 1 320 1 291 291 256 44.0 3e-68 MPASLLELKKKIASVKQTGKITQAMRMVSAAKLNQTEKKDKGYTLYNDTLKKTVSHLMSA QIVDHLKSENVPVNSKNLAKLDYTNVFGLGIVSDLIQARPEIKSTGYLVITGDRGLVGSY NSTVIKNMMGLFEDSKAENKDVKVLAVGRVGAQFFKKNNMNVVYENSGISDVPSFNEVLP IVSTAIKMYLNGVYDELYVCYTHHVNSLSSAFRVEKMLPISDLDIGSEEAEAHAKLEYDI DPDIDTALKALLPQFARSTIYGAILDAKTAEHASSMTAMQSASDNASDLVSRLTTQMNRA RQAQITTELSEIIGGANALE >gi|297148814|gb|ACGQ02000002.1| GENE 88 109727 - 111169 1886 480 aa, chain + ## HITS:1 COG:SP1508 KEGG:ns NR:ns ## COG: SP1508 COG0055 # Protein_GI_number: 15901355 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 465 1 467 468 723 80.0 0 MSEGEIVQVVGPVVDVQFPIDKNLPDINNALHVIKSDDETITLEVTLELGDGVLRTISME STDGLRRGMKVVDTGAPISVPVGDDTLGRVFNVLGDPIDNGPKFPADHRRDSIHKEAPKY SELTTSREILETGIKVIDLLEPYVRGGKVGLFGGAGVGKTTIIQELIHNIAQEHGGISVF TGVGERTREGNDLYFEMKASGVLDKTAMVFGQMNESPGARMRVALTGLTIAEYFRDVEGQ DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQA VYVPADDYTDPAPATTFAHLDATTNLERSLVEQGIYPAVDPLESTSSALDPEVVGEEHYE VATRVQHVLQRYHELQDIISVLGMDELSDEEKMIVARARKIQFFLSQNFFVAETFTGVPG SYVPVKETIKGFKMILDGHLDDLPEDAFRGVGPIEDVIKKAEKMGVTPSDPEAKALLAEK >gi|297148814|gb|ACGQ02000002.1| GENE 89 111181 - 111624 603 147 aa, chain + ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 8 142 4 137 138 120 48.0 1e-27 MAESEKLMTVNVVTPDGLIYSHKSSIVVMRAIDGERAVMYNHTPFLTPLVIGDVRVKRGK QLNNRVDHIAVNGGYIDFSNNVATIIADSAERARNIDLSRAEAAKKRAEQHLKEAKASHN ESSYERASVALKRAVNRINVHQSTQQK >gi|297148814|gb|ACGQ02000002.1| GENE 90 111675 - 111911 252 78 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0645 NR:ns ## KEGG: LBUL_0645 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 76 1 76 76 70 56.0 1e-11 MQQLGLHALLSLFIYFVTTALAFQAIKCLDLSKLFKIKKIFEEQILDIFLALGLGYLVGQ FFIAFMDYSLTLTNLFNN >gi|297148814|gb|ACGQ02000002.1| GENE 91 111992 - 112981 1454 329 aa, chain + ## HITS:1 COG:BH3739 KEGG:ns NR:ns ## COG: BH3739 COG1077 # Protein_GI_number: 15616301 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 2 329 3 330 334 394 61.0 1e-109 MAKDIGIDLGTANVLINVSGKGIVLNEPSVVAVNTENNEVVAVGTEAYEMVGRTPGNIRV IRPLKNGVIADFDITEAMLSYFIEKLNVKGFMAKPNILICAPTGVTSIEQKAIIQAAEKS GGGRVYLDFEPKVAAVGAGLDIFKPQGNMVIDIGGGTTDIAVLSMGEIVTAKSLRWAGDK MNQAIVSYIKNNRNLLIGSRTAEQIKIEIGSAFEPDPEKKITVRGRDMVAGLPKQTTISA IEVQESLHDGLMSIVRATKEVLEQTPPELSADIIDRGIMLTGGGALLANLDKLIAYYLQV PVLTADSPLEAVALGTGALLKNIEKHQGR >gi|297148814|gb|ACGQ02000002.1| GENE 92 113090 - 113278 142 62 aa, chain + ## HITS:1 COG:L122982 KEGG:ns NR:ns ## COG: L122982 COG0759 # Protein_GI_number: 15673654 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 52 34 86 88 68 62.0 3e-12 MIDSLRKHGPLKGLIMGIARIIRCNPFVRGGVDPVPDHFTLRRNPHPEKYEDPIIAKKFH SK >gi|297148814|gb|ACGQ02000002.1| GENE 93 113287 - 113514 319 75 aa, chain + ## HITS:1 COG:no KEGG:lhv_0815 NR:ns ## KEGG: lhv_0815 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 75 1 75 75 110 84.0 2e-23 MSKKLENISIEVNELKGKSIPSWEVIIPNKKAIGIIEKVEGRYRATTNKSNNVLFSKSLE SSINDLLSYFALHEK >gi|297148814|gb|ACGQ02000002.1| GENE 94 113534 - 114724 1084 396 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 384 4 387 414 295 42.0 1e-79 MAKLQNKTDIYDRVAWGIVGAIALLAIISFYAIWIAASNDSTLGTPFKAVIGQAVWYILS IALVIVIMQFDADQLFKIAPYAYALGIILLILVLIFYDRSSFVNNGAKSWFKLGSLTFQP SEVMKPAFILMLARIVKDHNEYYGHTWRNDWLLLGKIFAWLAPIAVLLKLQNDFGTMLVF FAIVGGVILVSGITWKIIVPTFIVIAVLGTTTILLVTTSWGQAFLGHFFKAYQFERINSW LDPSGDTSSGAYQLWQSMKAIGSGQIWGSGFGKSSVYVPVRSSDMVFSVLGESFGFVGGV VLIMIYLYLIIQMVMISFDTRNAFYSYISTGIIMMILFHVFENIGMSIDLLPLTGIPLPF VSQGGSALIGNMIGIGLILSMKFHNKDYIFSTAGDF >gi|297148814|gb|ACGQ02000002.1| GENE 95 114784 - 115224 662 146 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 144 1 144 152 147 52.0 5e-36 MLKQYSHIQIAVDGSKEADLAFSKAVAIAKRNNANLEILHVIDTRSFQNVSSFDSAMVEQ VSADAKKKLEEYYDRAVKAGIKNVHYSIEFGSPKTIIAHEFPQKHQTDLIVLGATGLNAV ERLLIGSVTEYVTRTADCDVIVIRQK >gi|297148814|gb|ACGQ02000002.1| GENE 96 115389 - 116567 443 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 376 46.0 1e-104 MNDFTKNIAQALLNQDKINDLLRKELQQAVNDLLEAELTAFLGYDPYARAGWNTGNSRNG AYFRKVDTQFGEIKIQVPRDRNGMFHQHTLPDYKQHSNVLESMIIKLYSKGVTTREIADL IEKMYGSHYSPAQVSNISKQMIPKVEAYHQRKFSDKFFCVYLDATYIPLRRITFDREAVY IAIGIKPNGHKEVIDYRIAPSENVENWTEMLQDMKSRGLEQVELFLSDGVVGMKTVLEQT YPKAHFQRCLVHVMRNICAKVRVDDRETIMNEFKQIHQQPNKEAAIKVLHAFYDKWNRAY NHVIRNLKEIEPDLLVFYSYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLNTF IGIQAMSYNERYFNRIHKGFGQVQDTLESYFD >gi|297148814|gb|ACGQ02000002.1| GENE 97 117252 - 118550 1252 432 aa, chain - ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 1 423 3 421 427 516 62.0 1e-146 MKPLAYRMRPQDLTEVVGQSHLVGPGKIIRRMVEAKLLSSMILYGPPGIGKTSIASAIAG STKYAFRMLNAATDTKKDLQQVALEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIV LIGATTENPYISISPAIRSRCQIFELHPLSATDAQKAIHRALNDEERGLGKYHVQLQKDA EQLLIEKGNGDLRATLNALELAVLSTYAEKGRNKDQQLIITQEIMADSIQVKSQNFDANG DGHYDLVSAFQKSIRGSDTDAALHYLARLIESGDLISICRRLLVIAYEDIGLANPAACQH AALAVWTAQQIGLPEARIPLSNAVIELSLSPKSNSGISAIDSALDVIRTQKVSSIPNHLK DSHYSGAKKLGHGNNYLYPHDYANDWVAQQYLPSSLIHDSYFRPKGNSKIELALKNQYQR LKQMQENGLDNH >gi|297148814|gb|ACGQ02000002.1| GENE 98 118547 - 119014 463 155 aa, chain - ## HITS:1 COG:BS_yueI KEGG:ns NR:ns ## COG: BS_yueI COG5506 # Protein_GI_number: 16080228 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 124 1 121 132 60 32.0 1e-09 MSENLNERLEQSSHGPLQTKPDERRRYLGSLRERVYLKMTITDLENPTSRQIFLNHINEY KDYQILINGKMDQNEAIDQIEASCAKENIPFTLISDENAQTNPDSAAILVVAKSAINKDR IAIKQVYPPEFPKEQLNQPKKESFWHKLFHRGDTE >gi|297148814|gb|ACGQ02000002.1| GENE 99 118966 - 119139 68 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDREMIALGVHSNFLTYNQPPVREKEKAFPHNSRKDFFQKQPKIKEVCCSIQQRGLR >gi|297148814|gb|ACGQ02000002.1| GENE 100 119096 - 119803 1212 235 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526453|ref|ZP_03956502.1| 30S ribosomal protein S4 [Lactobacillus jensenii JV-V16] # 1 235 1 235 235 471 100 1e-131 MSENSTADERMQSLFQIFYSINIFYLFNGGFFMSRYTGPSWKRSRRLGISLSGTGKELAR RNYAPGEHGPNNRGRLSEYGMQLHEKQKLRWMFGLNERQFRNLFNRAGKIRQGEHGTNFM VLLERRLDNIVYRLGLATTREQARQLVNHGHILVDGKRVDIPSYEVKVGQEISLKEKSKN LQQVKDALEAVVSRPSFVSFDENKLTGSLVRLPERDEMEPEINEALVVEYYNKLL >gi|297148814|gb|ACGQ02000002.1| GENE 101 120001 - 121734 1685 577 aa, chain + ## HITS:1 COG:L7722 KEGG:ns NR:ns ## COG: L7722 COG4477 # Protein_GI_number: 15674133 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Lactococcus lactis # 22 572 23 574 576 189 23.0 1e-47 MSSIQSLIIISIVVLLIATTGSMLMLNRRQSKILSFFEQDLNDLEDLGISADIKNLAQME LAGESLKTFNSWKKVYEKANDKIIPDLHERIEQCQEINTHYNLLRARKEIKAIDSAIDSV SEDLNKTKEVFRQLLESNRANKLQYDSLIKIYRDIRKEVLAASFYYGPALEKIEDELSEL ERHFNNAKNLSAQGDYVEGKRVLEKIDKRLAHLKDLLPRIKKAQNAIQDVYPEQLDELTS AYRKMRVDKLAVSEIDFLEEVKKLQTLLEKSRDLEARLEINELESNNAQLAKKIDGLYDV ITKEYSARPFVEQNQDKILRLLSHLENGSNQLIDKLEHIDQSYELTHGELQEAKDLSKEV SQMEEKYNHDVQALADGKGVYSEIKERWLKQLERISKIEKREKELVDEVDGLYEAEKMAN ESIAGFKQDVALIYRRLQRRNLPGKPDSFIQMYTLVVNEISHTSQELNQVRINMEKISEE MIQISDDVDRLKKEADQIINYAALVELTVQYSNKYRTNPKVAKARRTTMDLYSRAYNYKD ALDTIATAMEQVEPGSYQRIESAYYSQLSASDDEQDD >gi|297148814|gb|ACGQ02000002.1| GENE 102 121821 - 122975 1089 384 aa, chain + ## HITS:1 COG:SPy0816 KEGG:ns NR:ns ## COG: SPy0816 COG1104 # Protein_GI_number: 15674857 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Streptococcus pyogenes M1 GAS # 1 370 1 369 373 362 50.0 1e-100 MIYFDNSATTRIFPAALETYNKVSEDIWGNPSSLHKLGDRAHQLLEASRKQIAGLLDVKP NEIFFTSCGSESNNLAIKESAFTKKEFGKHIITTSVEHASVANTFTALENMGYRVTRLPV DSEGRININDLRNSLDSDTTLVSIMGVNNEIGTIQPIIEAGELLENYPNIHFHVDNVQAF GKNIWKQVFCPRVDLMSLSAHKYHAPRGVGILYKKAGKMLLPLIDGGGQEKGLRSGTENL PAIAATAKAMRLVSEKEAENYEREYAVKEKIYNYLADKPGITIFSPLKSNFAPHVLTFSL LGIRGETLVHTLEQKGIYVSTTSACASKVSDEASTLASMKVDEKVATSSIRLSFDASNTL QEADKFIKVFDEIYRHFAKVNHLG >gi|297148814|gb|ACGQ02000002.1| GENE 103 122985 - 124199 1352 404 aa, chain + ## HITS:1 COG:L183112 KEGG:ns NR:ns ## COG: L183112 COG0301 # Protein_GI_number: 15672361 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Lactococcus lactis # 3 387 5 389 406 487 62.0 1e-137 MQYTEVMVRYGELSTKGKNRKDFIGRLAGNVEKVLADLENVKIYPKHDRMHIVLNGASFE EVDRRLKKVFGIQTYSPVIRTEKTLEAIKKTALEIMQAVYKSGMTFKVNTKRADHRFEYD TNQLNLMVGDYLFDNLPNPKVEMKHPDVVLRLEVRQDAVYISNQLLHGPGGMPVGTAGKA VMMLSGGIDSPVASYLALKRGVDIEMVHFFSPPYTSDKALAKAKELTGILANYCGKITFI AVPFAEIQETIKEKLPEGYLMTIQRRFMLRLADMIREKRKGLAIFNGESVGQVASQTLES MAAINNVTTTPVIRPVATMDKTEIIRLAEEIGTFDLSVMPFEDCCTIFAPPRPKTKPKIE KAIEYEKRLDVEGLLQRAMEGIEISTIKPNEKFIDDQTADQDLL >gi|297148814|gb|ACGQ02000002.1| GENE 104 124199 - 124903 690 234 aa, chain + ## HITS:1 COG:lin2436 KEGG:ns NR:ns ## COG: lin2436 COG1187 # Protein_GI_number: 16801498 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 1 233 1 232 233 212 51.0 6e-55 MRIDKYLANMKVGSRKEVHDLIKAKKVTVNGQLVKQAKQQVADTDIVKVADETIAYEQFH YFMLNKPAGVITATEDPQQKTVLDLIEHKDRYQGLSPVGRLDKDTTGLLLLTNDGQLNHN LLSPKKHVAKTYFVELDYEVSDELIVNFAKGVTLADGTKVSPSQLKIDKSNKKQGFITIH EGKFHQIKRMFGLFDLGVVRLKRISMGNLSLDENLLLGKYRKLTKAEISALKDS >gi|297148814|gb|ACGQ02000002.1| GENE 105 125163 - 127814 3191 883 aa, chain + ## HITS:1 COG:SA1488 KEGG:ns NR:ns ## COG: SA1488 COG0525 # Protein_GI_number: 15927242 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 8 880 3 875 876 1167 62.0 0 MEVKMTNLAPKYNPNEVEEGRYQTWLDEDLFKPSGDKKAHPYSIVIPPPNVTGKLHLGHA WDTSIQDTLIRLKRMQGYDTLYLPGMDHAGIAMQAKVEAKLRKQGLDRHQMGREKFVKQV WDWKDEYANIIKSQWAKLGLSLDYSRERFTLDKGLSKAVRKVFVQLYNEGLIYRGQYIIN WDPKLETALSDIEVIHQDDKGAFYHVKYPFADGSGFVEIATTRPETMFGDVAVAVAPGDE RYKDIVGKELILPLVGRHIPIIEDQHVDPEFGTGLVKITPAHDPNDFLVGNRHDLKRINV MNANGTMNEECGKYAGMDRFDCREALVKDLEKEGYLIKVEPIVHSVGHSERSGVQVEPRL STQWFVKMKPLAEKALENQKTAGKIDFVPERFSQTFEQWMENVHDWVISRQLWWGHRIPA WYNKETGEMYVGEEAPKDIENWRQDEDVLDTWFSSALWPFSTLGWPDENAADFKRYFPTN ALVTGYDIIFFWVSRMIFQSLHFTKQKPFDHVVLHGLIRDEQGRKMSKSLGNGIDPMDVI DKYGADALRWFLLNGTAPGQDTRFSYTKMDSAWNFINKIWNASRFVIMNLPSDAKPAHMP DVAKFDLADKWIFDRLNHTVKEVNRLFDEFQFGEAGREMYNFIWNDFCDWYIEISKVALN GDDEDLKARKQENLIWILDQILRLMHPIMPFVTEKLWLSMPHEGKSISVASYPVTHTEFE NNDADNQMNFMIEVIKAVRNIRMEVNAPMSSSIDILIQLDKAEDKKILEDNAEYVQNFLH PKNMEVSTQVSAPKLAKTAVIPGAQIFVPLADIVDLDEELAKMEKEAKRLEGEVMRASKK LSNEGFVKNAPEAVIAKEKEKQADYESQLEAVKARMQELKESR >gi|297148814|gb|ACGQ02000002.1| GENE 106 127816 - 129072 939 418 aa, chain + ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 6 414 2 425 427 221 33.0 2e-57 MNKFNTLSDFLNYLYALPRLHKKSDLSYIKQVLAEMDNPQDKVKTVHVTGTNGKGSTCYY ISNLLEKAGQKTGLFVSPYIREFNERIQLNSQNISIEDLLVGANYIYQILQKLKIELVTF EYEVALAFWYFAKKRCNYAVIEVGIGARHDKTNVIIPEVSVITTVGLDHEKIIGPTLQDI AFEKAGIIKDKRPVVLGNVPESILPIIQKEAQVKSAPMYQLNKDFSVMSAENKLLVHTKM GIYQFESRPLVEGFDIAIACQVLSLLNLSILPTEIEKIINLTKIPGRYQIIKTKPTIILD GAHNMQAMNNLIDFVNAEKNKGQIYVLITMMKDKDLSEVFTLFNHNEKITLTTIDYPRAA KKADFPAEVLEKYKYRKNAIQAYIDLKKNLKENDTLVVTGSFYLVSQILNFQEKIDAS >gi|297148814|gb|ACGQ02000002.1| GENE 107 129062 - 129742 748 226 aa, chain + ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 10 204 7 196 221 89 28.0 5e-18 MQVKGLVGNIKGVIFDLDGLLVNSEKLYWQANIQAAQEAKLDIPEDSYLKLTGATAKDMQ NFYHKYFASEIERDAFIKRTDDLVWQWTDEGKLKLQKGVQEALDEFKSRGLHLAIASSNY KRVIEHAITKTGIKSYFDFYLSYDDVEKFELAPKPAGDIYELAAKELKLNKQELIIFEDS STGIAASKDAGIQGIMIPDLKSPSLKDKKNASLICTSFLDFLEKIA >gi|297148814|gb|ACGQ02000002.1| GENE 108 129777 - 130400 604 207 aa, chain + ## HITS:1 COG:L0306 KEGG:ns NR:ns ## COG: L0306 COG2003 # Protein_GI_number: 15672989 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Lactococcus lactis # 20 206 29 224 226 116 36.0 3e-26 MQIADKDHYLLKTDQELLNEIFILLEEAGIKSFAELNNVLLNKKLENFGQIYDYLTSCQI DDELLSRTITLLKRLKAVRTRKLIQFVSSHEVGKYLIDRFLGVEQEQLVVIYLDNKNKVL GERLLFQGTVNRSVVHPRDIFRWAVFYNSVGILIAHNHPSGDANPSQKDIEFTKQINKAS DLMGINFLDHIIVADRSYLSFKEEQLI >gi|297148814|gb|ACGQ02000002.1| GENE 109 130499 - 131503 1356 334 aa, chain + ## HITS:1 COG:lin1583 KEGG:ns NR:ns ## COG: lin1583 COG1077 # Protein_GI_number: 16800651 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Listeria innocua # 1 331 1 333 337 405 67.0 1e-113 MFGLGSKNIGIDLGTANTLVYMEGKGIVLREPSVVAKNTQTGEVISVGSEAKEMIGRTPG TIRAIRPMKDGVIADYDTTAAMLKYFMEKTVGNSKPAVMICVPSGVTEVEKRAVIDAARV AGAREAYVIEEPFAAAIGAGLPVMDPTGSMVVDIGGGTTDVATISLGGIVSSRSTRQAGD KFNSSISSYIHQKFNLLIGERTAEDIKIQIGSASVEKAKEIESMNIRGRDLITGLPKSVD VNAVDVAEAIQEVVQDIIVAIKETLEETSPEIAADVIDHGIVLTGGGALLKNLSEVISEA TKVPVFIAQDPLDCVAIGTGESLKNIEVMRRAHK >gi|297148814|gb|ACGQ02000002.1| GENE 110 131555 - 132412 776 285 aa, chain + ## HITS:1 COG:lin1582 KEGG:ns NR:ns ## COG: lin1582 COG1792 # Protein_GI_number: 16800650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Listeria innocua # 1 281 1 275 295 152 35.0 6e-37 MKKFLQNKKILVSFLTTLLVVIILGITVSLRSKRNSPLFFQKMGNDIISVASRVVNWPVS LASDGISNINSIINMQKENDHLKSQVSNLAQTKARNSSLEAENKQLKSALNLKNTLTTYT IVNASVISRSPDTWSDILIIDKGSSSGIKKNQAVMSGGGVIGRILEVNSATSKVELITTT DKSANRFSVEADAANGKKVHGIITVNSDDTNSLYFTQVVDSKKLKKGAKVYTSGLGGRSP KGLLVGTVAKTTRDSFGLSDLIEIKPAGSIGDASVVSVVERKVSE >gi|297148814|gb|ACGQ02000002.1| GENE 111 132412 - 132957 648 181 aa, chain + ## HITS:1 COG:no KEGG:LJ0964 NR:ns ## KEGG: LJ0964 # Name: not_defined # Def: rod shape-determining protein MreD # Organism: L.johnsonii # Pathway: not_defined # 5 180 2 177 177 106 37.0 5e-22 MNSRSKLSRWYIAIAEFGALIIDGVASIYAHSLLGLSGVSASFWLVVIAVAACSLIDENN NNEIILAFFIGLIADIYYLGFIGPYTVGLTLVSWLCQKVTRILPDVFVVRVPVIVICYLL FDAFFWFILTIASTISISFSQVLWGMIANAILALILASLSYPLFNLLGREYPFAIKMNYY K >gi|297148814|gb|ACGQ02000002.1| GENE 112 133000 - 133119 100 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MARKKKSKFQKLTIVMAVLMALITLLAILIPVLQGLNIF >gi|297148814|gb|ACGQ02000002.1| GENE 113 133211 - 133540 215 109 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00820 NR:ns ## KEGG: LCRIS_00820 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 109 1 109 109 117 59.0 1e-25 MLMIILLPVLGFITAAIVNAVFPKAKFRGYDVLPFFFIAACQNISNFLKNPSFLPYGFLT YFVLVLVISISSAIKFKNIDSGKLIRKLWDYLTVCTIFWYIGLLFTIII >gi|297148814|gb|ACGQ02000002.1| GENE 114 133542 - 133745 160 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|297205803|ref|ZP_06923198.1| ## NR: gi|297205803|ref|ZP_06923198.1| endoribonuclease L-PSP [Lactobacillus jensenii JV-V16] # 1 67 1 67 67 100 100.0 3e-20 MNMTVASLPSNNLPQFPTSYHNITNNCETFLTIIFLEYKNSAKSTFSAVKLSLLIVGILF LYLKFLY >gi|297148814|gb|ACGQ02000002.1| GENE 115 133738 - 134169 575 143 aa, chain + ## HITS:1 COG:lin2148 KEGG:ns NR:ns ## COG: lin2148 COG2001 # Protein_GI_number: 16801214 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 138 1 138 143 177 57.0 4e-45 MFMGEYHHNLDAKGRLIIPAKFRNQMGDKIIFTRGMEGCIFGYSEEEWQKIEAKLAKLPL TKRNVRKFTRLFYSGAMESEFDKQGRVNLTATLKEHAELEKECVIVGVSNRIEIWSQKRW DDFTDDADENYDDIAEDLDDIEL >gi|297148814|gb|ACGQ02000002.1| GENE 116 134166 - 135119 808 317 aa, chain + ## HITS:1 COG:SPy1666 KEGG:ns NR:ns ## COG: SPy1666 COG0275 # Protein_GI_number: 15675533 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Streptococcus pyogenes M1 GAS # 1 317 22 335 337 338 56.0 1e-92 MTTNFKHTSVLLRETIDNLNVKDEGLYVDATFGGGGHARYLLSKLNTGVLVGFDQDNYAI NAAKDNFSEYLSGNHQPQLIMVHDNFSHLTDNLNKLGIKDGIDGIYYDLGVSSPQFDQPD RGFSYRFDARLDMRMNQEQELDAYQVVNSYSQSQLADVLYQYGDEKFSRQIARKIVQRRQ QKPIETTFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLR PGGRISVITFQSHEDKIVKKIFKENSEVDVPRGIPIIPDNLKPKLKLVNRKPILATASEL ANNNRSHSAKLRVAEKL >gi|297148814|gb|ACGQ02000002.1| GENE 117 135132 - 135506 476 124 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00823 NR:ns ## KEGG: LCRIS_00823 # Name: ftsL # Def: cell division protein FtsL # Organism: L.crispatus # Pathway: not_defined # 1 123 1 119 120 97 49.0 1e-19 MADSSARNLNYNYEPSRKARSTFETERRMSVDPNKVPFSRSEIFILIAGSIVTIAMAAML VFTSVAATSAQHQLANIQTELTSSQTDFSNLRQEIGELTSSSRMNKIAKQEGLSLIESNI RTVD >gi|297148814|gb|ACGQ02000002.1| GENE 118 135509 - 137671 2287 720 aa, chain + ## HITS:1 COG:BS_pbpB KEGG:ns NR:ns ## COG: BS_pbpB COG0768 # Protein_GI_number: 16078580 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Bacillus subtilis # 7 720 2 713 716 476 40.0 1e-134 MKNSNNIKTTKTNVHSNRFQVGRVLQVIVALVFLIFLGRTLYISISKTVAGENLSARTAA LYKRNQVLKATRGTIYDRNGFTIAEDSHVYTIYAILDHSSINYKNKPEYVVNKDKTAEKL ATVLPLSKEQILKYLNPKTKAFQVQFGSGGSNLTIEQKQKIEKMKLPGIKFIESPSRLYP NGTFASHIVGLAQPVYNKKTKSTDLVGTMGLEAYYNKYLAGRDGYKESSVDASEYQLPNG TNAYQAAKNGDDIYLTLDSQLQNYLENLLTKVQSKYQPKALTAVVEDLRTGKVLAASQRP TFDAQTKKGLTDSYTDLLTQATYEPGSVFKILSFAAAINSGHYNPNELYKSGSLTLNGST IHDWNVTGWGSIPLYEAFPRSSNVGLSILEQKMGASTWRSYLNKFGITKKTGITLPGEQA GMIAFKSKLDQAVTSFGQGVNVNVWQMMQAYSILANKGQMVKPQLVEKIVSPTGKVVQNY KVQKVGKKVVSESTVKTVLQGMQDVVNKQYGTGTAYKIAGKSIAVKTGTAQIAGSSGYLT GNNNYIFSVIGVTPANNPHYAVYLTMKQPQKMTDPAETILASIFKPMMNRLILSSSVTKK ASASKEEVPNVVGKSVSNAKNDIEKVALSVEVLGSSDVVTQQTLATGQKLSAGSKVFVLT SGKISCADFTNWTVEEVKQYAALAGVSVKVSGSEDGKVKLQSIKAGTTLKNGQEITIKTK >gi|297148814|gb|ACGQ02000002.1| GENE 119 137692 - 138651 1044 319 aa, chain + ## HITS:1 COG:lin2143 KEGG:ns NR:ns ## COG: lin2143 COG0472 # Protein_GI_number: 16801209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 1 317 5 321 324 261 48.0 1e-69 MLYSIYALVISMVITAIFLPWLIVFMHMHHEGQPIREEGPKAHLKKAGTPTMGGTVFVIA SVIATTLVLVWKQSFNNIAIILIIALLGHGLIGFLDDGLKIIWKNNLGLRAWQKLLLQIF IAIVLVLIASFDRFAFALRMPWGGALTGPVIFVLFTIFWLVGFSNAVNLSDGLDGLASGL SIVSFATYAYLAFKQENLAILVFCMSVIGGLIIFLIFNHKPAKIFMGDAGSLALGGSLAA IAILLNRPWSLLLVGLVFVCETASVMIQVTSFKLTHKRVFKMTPIHHHFELSGWSEWKVD IVFWLVQLIFSILYLIIWG >gi|297148814|gb|ACGQ02000002.1| GENE 120 138657 - 140027 1750 456 aa, chain + ## HITS:1 COG:BH2567 KEGG:ns NR:ns ## COG: BH2567 COG0771 # Protein_GI_number: 15615130 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus halodurans # 1 455 1 448 450 388 47.0 1e-107 MKDIKTYQGKNVLVLGLGKSGFAVSELLLKLGAKITLNDKQDLTDNEHAQKLEKMGVRVI GGHHPVDLLEEEHFDFFVKNPGIPYENPMVQKASELKIPIITEPEIALSASEAPFVCVTG SNGKTTTVMLTSEIIDHHLAKSGHHAYAVGNIGVPISEVVQKATKDDVLVVEISSFQLLG VTDIKPKVAAIVDIYPTHLDYHKTMENYIAAKLNVTRFQTCDEYFIANFDQKEILSKEEA TTKAKIQTFSMNDHSASYFVGDEYLESQSEKIMKISDIKLPGRHNLQNSMVAIAISKLMG AENSDIQAVLSTFAGARHRLQYVTTINDVKVYNDSKSTNIEAATVAIKAFSEPEVLIGGG LDRGFTFDSLVPLLKKHVKAVVLYGETRYLLADAARKAGIKEIKIVNTLKEAVPVAYELT KPGDVLLLSPACASWDQFKTFEQRGDYFMEYIKELN >gi|297148814|gb|ACGQ02000002.1| GENE 121 140030 - 141142 1236 370 aa, chain + ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 364 1 359 363 332 47.0 7e-91 MRVIFTGGGTGGHIYPILAIIERLKETGISNDDEILFVGTERGLESKIVPRAGINFKTIE IQGFSRKNLIKNIETIKLFMKATKKARKIISEFKPDVVLGTGGYVSGAIVYEAAKMGIPT LIHESNSVVGLANKFLGHYVDKICYTFDDAAKQFSEKKKLIQTGNPRSQQVLNLNLEKID LAQKWSLNPQMPTVLVFGGSRGALAINRAMESALSELSKKPYQVIWATGQYYYGSVKEKL AGKDIPKNLRIVPYIDNMPALLPQMSCVVSRSGATSLAEFTALGVPVVLIPSPNVTHNHQ MKNALDMEKAGAALVIPENDLNPNNFVSSIDHILLDSEYASKMSKASKKLGVPDSADQII TVMKALQANK >gi|297148814|gb|ACGQ02000002.1| GENE 122 141173 - 142027 959 284 aa, chain + ## HITS:1 COG:lin2140 KEGG:ns NR:ns ## COG: lin2140 COG1589 # Protein_GI_number: 16801206 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Listeria innocua # 38 270 12 244 270 84 29.0 2e-16 MTNRRITKKDPKKDLDNFLDYKKNKNNITNRTNQKASDSLTNLNNERKQALRRRLGAIII ISILAILGLGIYVSSYTRLQKIIVVGAPELDATEVIKKSGIKAEDQLIDYWLGKNTYESK LKKYYPEIKSAKLKLAGLNQIKLDLQEYSTLAYVNQNGRYYKILNNKKIARQSLTESQLN KSLPIFVGYTSKSGLFTDLKALKAIPTKLRNQISLINGKSTRKSEIVLLMKDGNIIIGNT DTIAQKITYYPQIKSNLSSKSIIDLEIGAFSRPLTDSEKKNLGF >gi|297148814|gb|ACGQ02000002.1| GENE 123 142109 - 143479 1448 456 aa, chain + ## HITS:1 COG:SP1667 KEGG:ns NR:ns ## COG: SP1667 COG0849 # Protein_GI_number: 15901502 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Streptococcus pneumoniae TIGR4 # 1 397 1 396 457 298 40.0 1e-80 MSNSSLIVGLDIGTDSVKAVVADASVNEIQVIGAVKEKNKGMRQGKIVDIDQTANAISSA LKNVEQKTNSKIYRVVTGIPVGMLQLETSTGLINIGEDGREVSDQDVKRVLELAIKQAVK SGREAIAFLPSRFLLDGKTDVDDPRKMIAHSLEVHGILLTAPTGDLHNIKKAIERAGYQN NFFIPTPLAIASVALDEGERTFGSVILDLGGGTTTATVIHENKIKYATIDLEGGEDVTKD ISVVLGTSKKDAEQIKLDYGSADPELTSSEDKFSVKTVGKSEQETVDENYLSQIIAARMD QILGRIGKGLASHDAFKLPGGVVITGGMTLLQGLQSAVEKHFEVKTRVYQPDEMGLRNPA YAAAYGVVNYVYNLNDIDLLVNGVIYGTSASHENPLAEFSENSINIFKRHAEVSENNTKE AYNDTIAPRVDREKDGANKSENSKKGIRGFFKNFFD >gi|297148814|gb|ACGQ02000002.1| GENE 124 143494 - 144867 1597 457 aa, chain + ## HITS:1 COG:BH2558 KEGG:ns NR:ns ## COG: BH2558 COG0206 # Protein_GI_number: 15615121 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Bacillus halodurans # 3 327 2 326 382 363 68.0 1e-100 MDFQFDQDDNKNAVIKVIGVGGAGGNAVNRMIDEGVQGVSFIVANTDVQALNSNKAENKI QLGPKLTRGLGAGSHPEVGQKAAEESEQTIEEALKGADMIFITAGMGGGTGTGAAPVIAK VARETGALTVGVVTRPFTFEGPKRSKNAAAGIAQLKQYVDTLVIIANNRLLEMVDKKTPM MDAFKEADNVLRQGVQGISDLITSTDYVNLDFADIKTVMENQGSALMGIGRASGENRTVE ATKLAISSPLLEVSIDGAKQVLLNITGGPDLTLFEAQDASEIVSKAAGDDVDIIFGTSIN ANLGDEVVVTVIATGIDSKAEEEASKQLPGHHRTVSRPSVDIKPEIEVNQAPQPQNVETS DTVKAEPSQVAETLSEKPQVAEESHQKESMVNPIDVWNLDDNNNRREVKNQGVVNKKQDT FDTFNNDDQDSISQIETSADNGDNSSDIPFFRHRNQQ >gi|297148814|gb|ACGQ02000002.1| GENE 125 144883 - 145344 579 153 aa, chain + ## HITS:1 COG:BS_ylmF KEGG:ns NR:ns ## COG: BS_ylmF COG1799 # Protein_GI_number: 16078603 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 50 150 46 145 149 97 47.0 1e-20 MAALEKISSFFGISDSSAEDEYAPEATSASSQLNEVEVPTEIADHLNNKGRNNVVSIKSG SVPQSKIVLYEPRVYSDAKEVAQNLLSNKAVIINFSRMDDDSARRIVDFITGTVYALNGE IQRVGDKIFLATPPKFETDGKITELVEKKDKLS >gi|297148814|gb|ACGQ02000002.1| GENE 126 145344 - 145631 368 95 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00832 NR:ns ## KEGG: LCRIS_00832 # Name: yggT # Def: cell division membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 95 1 95 100 70 46.0 1e-11 MINFLLSTISVINWLLYIYTILIVLNAITSWLPFLYNSVVGRYLNKIVEPYVGLFRIGFL KTIAIKAGVDVSPVLAIFVIYIIQNLLTQLAFKLI >gi|297148814|gb|ACGQ02000002.1| GENE 127 145675 - 146499 1149 274 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526426|ref|ZP_03956475.1| ribosomal protein S4e [Lactobacillus jensenii JV-V16] # 49 274 1 226 226 447 99 1e-124 MNENILLSEKIKKRAQFLRSQSDNDDISQLSGYLIQVCYGKEEILTNFLDPGARANLKEL AQDDFYVQEFGGYDRAEKCRAIIRNDWEYQDVRNFQLKLINITYNHKFATITHSQILGTL VGSGLNLSSLGDIITDGKGKWQFFVSEAMADFVCQEIKRIGKVAVSLNEVSLKQIVNIED DIQNTKIIVNSLRIDAILAALTKSSRNIVKQLIEKENIKLNWHKIDNSNIIISVNDVLSV RHYGRIEISNITNTRKGKYRLEANLWLSKKKRLY >gi|297148814|gb|ACGQ02000002.1| GENE 128 146505 - 147200 798 231 aa, chain + ## HITS:1 COG:BH2546 KEGG:ns NR:ns ## COG: BH2546 COG3599 # Protein_GI_number: 15615109 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Bacillus halodurans # 1 151 6 148 165 70 31.0 3e-12 MDIHNKEFTPRGHKGYDRYEVDSFLDQIVDDYGDCLDNNVDLKNENVALKNKIKELESEV DRLDELRKTINDEVLKAQKDASELRQKAQEDAKKIVEDAKNQAASENQSLVYQNDTLKND YQRLKTQVADFRYKIRAKLQKQIDSLDDNTWQYYLDAATNVERIYPSDGGEPIPTASLPT VDNKGQSGVNLEHDKDADKVPLSTSQPENDQENTNDSDVTIVFPDDYKDHN >gi|297148814|gb|ACGQ02000002.1| GENE 129 147417 - 150209 3297 930 aa, chain + ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 930 1 932 932 1186 60.0 0 MRIKDTLNLGKTKFPMRGNLPNREGEWQKAWEENKLYEQRLKLNEGKPRFDLHDGPPFAN GNIHMGHSLNKISKDIIVRYKNMSGFYAPFVPGWDTHGLPIEQQLAKQGVDRKTMDRAEY RELCRKYAMEQIDKQRTDFKRLGVMADWNHPYITLQPKFEAEEIRVFGKMFEKGYIYKGL KPVYWSPSSESTLAEAEVEYHDVKSPAIYVAFQVEDGKGILDNDTYMVIWTTTPWTIPVN VGITVNPKFEYSLIKVAGEERKFVIGTSQLEKVAEDLDWQDYEVVDTFKGTDFDRMTVKH PLYDKTSLVMNDTYVTAEDGTGLVHNATGFGEDDYNVGKKYGLPVYSPMDDQGRYTKDIP DPNLVGVFYDDANKMVTKQLEEKRALLKLSFFTHSYPHDWRTKKPVIYRATTQWFASVDA FRDQILAEIEKTNFTPSWGKTRLYNMIKDRGDWVISRQRAWGVPLPIFYAEDGTPIVSKE TIEHIAQIFEKEGSNAWYTHTAEELLPAGFKSEHSPNGKFKKETDILDVWFDSGSSHQGV LAARPELHYPADLYLEGSDQYRGWFNSSLITSVAVSGHAPYKSILSQGFVLDDKGHKMSK SLGNVISPNDVVKQMGAEIIRLWVASADTTSDVAVSKGILQQNAESYRKIRNTLRYMLAN TSDFDPKANRVAYKDLRSIDQYMEVLLNKLVKDCLAAYNKFDFTNVYKMVFKFISNELSA FYLDFAKDVLYIEGEDSLPRRAMQTVIYDALVKITKVMTPILPHTMEEAWSYLKEDREYV QLSDMPQVESFDNEAELLQNWSEFMKFRDDVLKALEEARNAKLIGKSFEACVDVYPTEHT KAMFNKLNADMRQILIVSKLNVLDSEAPDNAEEFETAKLVVKHAEGTVCDRCRMTRTDVG NNANLPKLCGRCAEIVEENFADAVKEGFED >gi|297148814|gb|ACGQ02000002.1| GENE 130 150209 - 150430 298 73 aa, chain + ## HITS:1 COG:XF2352 KEGG:ns NR:ns ## COG: XF2352 COG1278 # Protein_GI_number: 15838943 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Xylella fastidiosa 9a5c # 1 64 1 64 67 57 45.0 7e-09 MRTGTVKQFDSAAGFGFIDDDLTKASYFVFYTAIKEAGYKSLEIGQRVRYQLAQGKKGLQ CINVYIDNGEGGY >gi|297148814|gb|ACGQ02000002.1| GENE 131 150430 - 150996 784 188 aa, chain + ## HITS:1 COG:BS_yqkG KEGG:ns NR:ns ## COG: BS_yqkG COG0494 # Protein_GI_number: 16079418 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus subtilis # 3 172 4 172 185 132 43.0 4e-31 MDLREQEIASEQIFKGQIVDLSVRTITLPNGKTATREIVKHRPAAAAMAINSENKMLLVE QWREPIKDLTLEIPAGLIDETDASPLDAMKRELNEEGGLKAEYWEKVSEFYSSVGFCDEK MYLFYCDTLTRLEDKRNLDEDEFLTTHWYSLSELKQLLSEGKIVDAKTIYAITVWENMIL SGSKENND >gi|297148814|gb|ACGQ02000002.1| GENE 132 150989 - 151267 236 92 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850941|ref|ZP_05556330.1| ## NR: gi|256850941|ref|ZP_05556330.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 74 1 74 92 118 100.0 1e-25 MTEKRADYQRKHNKSKSFSLLTDFFRKDKKSQEFNKEDYEAGINQDVNSPEYQRNPELTR EEKIDRLKKRLNIAIGIVLGLLVLVFVALFKL >gi|297148814|gb|ACGQ02000002.1| GENE 133 151281 - 151970 684 229 aa, chain + ## HITS:1 COG:SP0991 KEGG:ns NR:ns ## COG: SP0991 COG0775 # Protein_GI_number: 15900866 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Streptococcus pneumoniae TIGR4 # 1 228 1 227 230 150 38.0 2e-36 MKIALIVPMPEEAEFYYQHFHDREVKMFGCTKFEHFSVNENEIYLGLSGIGKVNAAMNLS NLLARVDIDLIIMTGSAGSLKPEIKKKDVIVVNSFAYHDAHNTAAGDYVEGQIPREPARF DLQSTERAQFIDFLKTRGFNFKEGLVVTGDSFIASEAAKTVIKANFPEAVGVEMEGASFA QVAYHFNKPLIALRAISDNGDEDANESFEEFVKEAGQKAADLIISYLKR >gi|297148814|gb|ACGQ02000002.1| GENE 134 151989 - 153152 1140 387 aa, chain + ## HITS:1 COG:BH1260 KEGG:ns NR:ns ## COG: BH1260 COG1104 # Protein_GI_number: 15613823 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Bacillus halodurans # 6 385 4 379 386 299 42.0 6e-81 MDRKLVYLDNAATTPVSEAVVAEMTKQLAENFGNPSSTHAFGRKALEVVDQARHRIAKFI NARNDDEIIFTSGGSESNNTVLRGIAKEHNYDCQIITTAIEHPSILNTAKELQAEGVEVI YLPVDESGHISLADLKAALSAKTALVSTMAVNNEVGTINDLAQIGQIVHEYNPKICFHVD AVQGLGNIELDVQAMQIDFMSTSAHKINGPKYIGFLYERTGLSLPSLITGGEQEKKRRAG TTDAPSIAGFGEAIKLLQAVDRVAEQTRYQEFQQIVLDALDANHIKYEINGSLTGLVSHH TLNLHLIGIGTYVMLTNLDLAGFAVSGGSACTAGSLTPSHVLTAMYGADSPRIEESIRIS FGRLTKKAEVEAFAQALVKMALRLQKV >gi|297148814|gb|ACGQ02000002.1| GENE 135 153204 - 153539 415 111 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1219 NR:ns ## KEGG: FI9785_1219 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 110 1 110 111 164 76.0 1e-39 MANTVIINGDTRKFTINENVKRYSLIDVGFVKSPKGNFIYEHPLYNESPYNAPTKLKMTI NQDLDHLTMVITDKNGLQKVNIFKNQQLKPTVELLNFILKDLIEREIIKPL >gi|297148814|gb|ACGQ02000002.1| GENE 136 153553 - 154680 1491 375 aa, chain + ## HITS:1 COG:L52034 KEGG:ns NR:ns ## COG: L52034 COG0482 # Protein_GI_number: 15672819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Lactococcus lactis # 5 373 15 382 384 493 66.0 1e-139 MVDNSKIRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDDTDDAGVCTATEDYEDVK RVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSLD ADYIAMGHYAKTVKDKNGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLANLTKPQVR EIAERSGLATAKKKDSTGICFIGERNFKKFLSEFLPAKPGKMVTPDGNVVGNHSGLMYYT IGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGYDSPRLYATSLKASGMSFYTGNPD HDVEFDCTAKFRYRQADVAVHVKYHAADKTCDVYFDEPARAVTPGQALVLYKGEECLGGG NIDAAYQEEKQLQLV >gi|297148814|gb|ACGQ02000002.1| GENE 137 154830 - 155147 408 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850946|ref|ZP_05556335.1| ## NR: gi|256850946|ref|ZP_05556335.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 105 1 105 2861 181 100.0 1e-44 MGVSRNNFKNKMKQMAEQKPRFGFRKFSVGLASALIATVFYFGAMPSSVKADVQAETETD TKTVSQIDQQNKKTNNQNSSKTANMSNQQVASMHATTTTQNENGG >gi|297148814|gb|ACGQ02000002.1| GENE 138 155567 - 163414 10316 2615 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0942 NR:ns ## KEGG: LGAS_0942 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 1118 2407 1342 2527 2833 140 25.0 6e-31 MNATSTFHVSFHLYDLQTTNVTGIDPSLYNITQADVGPHTYQVTWEVNGKEQTPADFVYD VEPSLSINPVKRVGGTNAVKMGTDHTYSVDLSNQIGINNYNRVPKDFNAGSVITIPVASN FELNKAATDALNTLNDGTEITQDGVGKDIIITIPEGKGVDLNQTSVAPYYFVGHFNGDQP DQDTKAYTPTGAVISATVNYSDTYSKTASNGTFVDILLGKTTEDEVKKAASKPAEQQSTQ EKEQIKSIYGDVTTTSTPKRDSQVLMLDHENDDLIGSFGYSVNSSDSFTNGSAQFSFTFS SNQHVYKVTTPESAGMFLSGVKTYQYRIVRADNTVQTGQVNANEDIVNTDSSPIVSLTFT PDQLLTGANVTGDQVFKFYGKITTASGSQAGDKLDSSFSLNGTVDNHNYTSSSELHQTVG QQTSTLQLQSTGTMTVAPGGQIGYLYTTLGNSSVTKLGTVYEPTIYYVMPKGISAQKLSG LYVQNFQGVVPKISEFKNSDGSYTVKVDYKGTGFTYDFANQEKDDEGQPKLLGFWIQALP DAAKGSYDIKAYIDTTTPMDKTTNPASSDDVKKLLGLTNDNQLYDLGSFTAKVGLGDSET GVTLSAGPDGIWRQRVQATNKKGENLQFAYSVINTSSKELSNNHIILSLPSGQGGYVGSQ HPDKYGRTMTFRLTGPIQLPDDLKNAEVKYSTQDFNFNGNMSDISDLSSFVSAAQVTDWN IIKTIEIYLPTIAANSQSGRIILNGQDTTAEGDFNGIGFLANGLYSDSMAPQIVTQINSK ANPNEQIAATIRINRLVKVPVKLVKADGTKIEIPSMEKEYNPNDSSLIISQDYPQANIPA DLITANVQPGYSINGPVFTNGSGSNLSWGVTVSTTGGQEIDFYVESKKITVSGKTPDGPK TPDTPLPDNPNMNYPEHVDKQALYKEVTRTINVYNKDKQLVGSKTETLKLYRTATVNEAT GKVEEYSKWQMVTPTTSGWDKYLFGQVQSGDLIKVEVTDEDGRKLTTDPVSGETIPATEM SADNIQSPIIKQTDSEGNSVYGVKEVSVDDLINTINQKQTAGDTADITVNEIVNVSVGPA QVTLHVYWVDTQTPDTSSDSKDGFKLVQKQDVTDYPGTKATLDKLPENYDYADGQDQVTE ITNNGQDVVIRLKHKISTNTETKTITRTINITKPGEETKTTKQSVTFSKTDSTDLVTNQP TEGKWTRTSDSDQFTGLTEDDLKVDHYTTKISKNGQADDSATAIPTETVTAGSSDETFDV TYAPIKKSETVYWVDTETKDSAGQEGYKVVASELVSEQLEGSIYQLTKSTPENYVLADGQ ADIKSVTVDGNNVIIKLKHRTNKVPETRTVTRVVYVTKPNATKASRVVNTAIEFTRDNVV DAVNGQIEHGDWDPDSAVINGYTPTPQDHYKVVIHKGTPDGETVQSIDQINNATGDTPSD IYYVTYNPINKSETVYWLDTETQDPAGQKGLKVVQSEDTPSQIEDSSYTLTKKTPDNYVL ADGQAPVTSVTVDGNNVYIMLKHGTTQGTEETKTVNRTIYEIKPDETEPTVKYNKTLTFT RTPTVDAVTPTKVVNEGTWVAKDNDTSWTAVTPDEVPHYKAVIHEGSADGNVVDSIAAKT DVDADTPNETYYVTYDPINKSEVVYWLDTETQDPAGQKGLKVVQSEDTPSQIEDSSYTLT KKTPTNYVLADDQVDIKSVTVDGNNVYIMLKHGTTQGTKETKTLTRIVYVTKPGENEPTK KYDKTITFTRTPTVDAVDHTKVIDSGTWTLESGSWDAFTPDKVDHYTPVIHKDSADGQEV NSIIAKTNVNADTPNETYYVTYNPIESSETIYWVDTQTPDTSDKGYGGYKVIQSENAGGQ EGSTYTIKSKTPEDGYIPVGEVPTTVVLDGNDVIIKMKHGTKDGEKETKTVKRTVYAINP GETEPTKVFEKSVEFSRTPTLDAVNGDKLSDGTWTPEKGTLAGYTPDDQPNYTAVIHKDT ATGQVVESIPENDDITINSANEVYYVTYTVNAHSLTVTVHDNDIDTDLDDYGFKGEGDPN TDTGYDWNKVKQILQNKGYKIVDDQTIPTTYGTSDATYTIHVEHEVVPVGPDNPEKPGTT INPNDPEGPKWPSEDQYKKAYTFTLHFLDKDGKVLHASITKSVDWTRTVYVDKTNGQIVK DPRTTDWKASSENYDAIDIPQIDGYVANSTTKKGLKVENDKVTAAANEQANSEDDLVYTV VQHSLTVTVHDNDTDTDLTYYGFSGKGDPNTDTGYDWNKVKKNLQNKGYKIVNDQTIPTT YGTSDATYTINVQHGTKAGDTETKTVTRTVNITKPGEKTVSTTEKVTFNKTDSIDLVTGK TVKEGTWTSDKKGFDATNVELLDGFKLKITETVDGQTHDVTSIPAEEVTENSQDEIFDII YLPTGKSLEPLVSREVTRTVTITKPGEKPSTKTQTVTFSGSQNPDGTITWDNDPKVENKF NAISVDSVDGYKAVIKNSDGKVVQSIDDENLNPATAKDEHFTVTYEKIATPAPEPSPAPT PEPTPTSNPKPAANTHPENVKPEIHPSLTKTNVVKGNFKSAKSAARRINKLNSATKAEKL PQTGESKTNASLLGLLGLGMSMALGLVSRKKKEDK >gi|297148814|gb|ACGQ02000002.1| GENE 139 163511 - 163819 482 102 aa, chain - ## HITS:1 COG:L178933 KEGG:ns NR:ns ## COG: L178933 COG0599 # Protein_GI_number: 15673518 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Lactococcus lactis # 1 101 1 102 102 149 74.0 1e-36 MVKQTAGRDQLGDFAPEFAHLNDDVLFGEVWSDEKLSQRDRSFATVTALISMGAFEQLPY HMQKAKENGISQAEISTLITHLAFYVGWPKAWSAFNIAKKIY >gi|297148814|gb|ACGQ02000002.1| GENE 140 163831 - 164229 465 132 aa, chain - ## HITS:1 COG:L178204 KEGG:ns NR:ns ## COG: L178204 COG1917 # Protein_GI_number: 15673516 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Lactococcus lactis # 7 131 11 133 133 147 57.0 7e-36 MKNDKNIFGIGQENVDYAQYFDGKSFLNGLISPQDNIPFSVANVTFEPGCRNHWHAHTDG FQILLATSGEGWYQEWGKKPQKLLPGDVVVVKQGIKHWHGAAKNSSFSHLAITQGPTEWY EPLSKNEYDNLD >gi|297148814|gb|ACGQ02000002.1| GENE 141 164333 - 165220 554 295 aa, chain + ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 290 1 287 291 154 32.0 2e-37 MDTRVLRYFLTVAQTGNITEAAKKLHITQPTLSRQLQKLEEDLGQELLDRTQKGHFGLTN AGIILARKSENLLQIWDDISEEVKNSGPDISGKLKIGLVESQCSIIVERALKQLQILYPK LQFELYSAYSDDLKNALDMMQIDCAILLEPVESTKYFQKQLPIYEQWGLIVGKKHPWSKK RLISVSELKDTNLIIPKRSIINQDLEASLGIKMNLENIKGFVNLSSNISWLLETGEYATL GIDGVLSVRPNPNLVFVPLNIEKNSGHVLVWRKNSQTSAAMQAFFDMLEEKIKQI >gi|297148814|gb|ACGQ02000002.1| GENE 142 165239 - 165898 649 219 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 208 1 204 206 157 41.0 2e-38 MQIYFVRHGKTEWNLASKFQGGHGDSPLLPESYEDIKKLGNYLKGTKFRGIYASPLKRAF DTAQGVQQSMGISLPVRVEERLREFNLGNLEGMKFEEAEKKYPKEIDNFWNHADLYDPSA IHGETYPEVIARGKDFAQEMAKLYPNKNDKILAVSHGGALCAIMGGLLGYPLSEIRKHGG LSNTSLTILETDDEGKTFKKVVWNETDYLGRKLGATDSL >gi|297148814|gb|ACGQ02000002.1| GENE 143 165898 - 166539 759 213 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1187 NR:ns ## KEGG: LGAS_1187 # Name: not_defined # Def: TPR repeat-containing protein # Organism: L.gasseri # Pathway: not_defined # 1 208 1 208 214 213 53.0 5e-54 MSKKTVQLYQQGKIQTAIQELIKDIDSDPKNANNYLELSTYLLEQGAIDQAKKLLVQAKG LVAEPQTMDYNLAICYYMEGDFDRALALLDTIPNNDETYYQKALVFHKLGNPQKALAFAM SVSKVDNDLLELLGDIWLSLGDFAKARENYLKISKDARSGKLNFLIGVTLFGSSRQEAEQ YFNLAKQLDPDYYQSAKKQYDSLLKVIKQGKEK >gi|297148814|gb|ACGQ02000002.1| GENE 144 166539 - 168893 2112 784 aa, chain + ## HITS:1 COG:lin1544 KEGG:ns NR:ns ## COG: lin1544 COG0507 # Protein_GI_number: 16800612 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Listeria innocua # 6 783 21 795 798 469 37.0 1e-131 MVEFTGRLSGIIFENNEDMFKILDVEIVGELAGYDQDDIRVTGSFGDVTINSEYQFSGEL VVHKKFGLQFKAESYHQVMPHEEGSLTKYLSGDKFPGIGRKTAQSIIDQLGLNALQVLKE NPNKLDQLSLTQKQKDSLLSGLNSMDSYAEISLKLSQYGLRKNVINRIYNLYHGDSIKRL EKDPYAIINEVSGYGFKQADYIGEQLGIPFNDSRRISGGIYQVLLNKLQEQGNTFVELKF LLTEVSELTDIPQFDSIAEAVNDLQRAGKVVVKDDVISLQNIFETEQVIAQNLARLNENK CENFADEKIAQVIDEWEKHLKIKYDDTQKSAIKNALNHPLSLLTGGPGTGKTTIINGILY CLRRLEEIPAASLYSEDPPFILAAPTGRAAKRMSETTGVEAKTIHRLLGLGINNSNNDDE IELNQINGEILIIDEMSMVDMFLFKQLLSSIVGTKRVVFVGDKDQLPSVGPGNVFGDMIT AAAFPVTKLTTIHRQGDDSSIITLAHSINEDQNTNLLFQKTKNYSFIPCPPAQVGQAIEQ IVNYAVKKGFARDDIQVLSAMYHGTSGITNLNNLLQKILNPKEENSKFVESHDEKFMIGD RVLQLQNNPEKDIYNGQIGKVIGINENKSDELLVCNFDDREVKFSRKDLLDLTRAYAITI HKSQGSEFPLVILVLTMQNFVMLRRNLLYTAVTRAAKNLVLVGEQKAFLMATNTPGNNRK TGLAKKIVSLMPQLEQEEDQQEDNASNIEKAEDEGPKILTKEAIYSGKIDPMIGMQGIKL EKLN >gi|297148814|gb|ACGQ02000002.1| GENE 145 169001 - 170683 2216 560 aa, chain - ## HITS:1 COG:SPy1876 KEGG:ns NR:ns ## COG: SPy1876 COG0595 # Protein_GI_number: 15675695 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 2 557 4 555 560 708 61.0 0 MVRIKKNEVAVFAIGGLGEIGKNMYCVQYQDEIIIMDCGIKFPEDDLLGINYVISDYSYL IKNRKKIKALVVSHGHEDHIGGIPFLLEKIPEVPVYATPFALALIKGKLDEHGILKTTEL HEEHEDTVLTFDKLSVTFFRTTHSIPDTLGIAVHTPLGAVIFTGDFKFDLTPVMNQPAPD FQRMAKLGDEGVLALLSDSTNAEVSAFTKSERFVAKSLNNIIKGIDGRIIFATFASNLYR VSTAVEAAIETGRKIAIFGRSMENGIQNGIDLGYLNVPKDLIVDANEINRLKPNEAMILC TGSQGEPLAALSRIADGTHRQISIQPGDTVIFSSNPIPGNTLSVNHLINKLMEAGANVIH GKVNNVHTSGHGGQEELKMMVRLAKPKYMIPVHGEYRMQVIHTHLAQDAGVPKENTFVLS NGEVVAFSPEGSRIAGHIPAGDVFVDTSGTADVGNVVVRDRQILSEEGLVVAVATVDYKH QRVLAGPDILSRGFVYMRESQDLISQAQKNVYHVLRTQMAKKPRPSENDIRKAIIANLQD FLYARTERRPLILPMIIEKK >gi|297148814|gb|ACGQ02000002.1| GENE 146 170687 - 170911 364 74 aa, chain - ## HITS:1 COG:SPy1875 KEGG:ns NR:ns ## COG: SPy1875 COG5503 # Protein_GI_number: 15675694 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 76 76 61 51.0 4e-10 MIYKVLYQDNKIVNPRRETTKTLFLEADSIGQARMMVEDNTPYNVELIQELTGNSLAYEK EHADFKLTTFDTDK >gi|297148814|gb|ACGQ02000002.1| GENE 147 171090 - 171644 586 184 aa, chain - ## HITS:1 COG:SP1456 KEGG:ns NR:ns ## COG: SP1456 COG0242 # Protein_GI_number: 15901306 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 183 13 202 203 187 51.0 7e-48 MILMKDIVRDGDPVLRRVADQLTFPLSDHYQKLADDMMEYLINSQDPKIAEKHQLRAGVG LAAPQVGEGVQMASLLVPNDKGEIIFKETFVNPKIISESVRQVCLSEGEGCLSVDKVIDG YVPRPNKLTIKYFTVDGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRINKKDPFALKDDT LVIS >gi|297148814|gb|ACGQ02000002.1| GENE 148 171878 - 173722 2412 614 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 6 610 5 609 613 857 70.0 0 MSEQRREDIRNIAIIAHVDHGKTTLVNQLLKQSDTLPEHINLEDRAMDSNDIERERGITI LSKNTAVKYHDTTINILDTPGHADFGGEVERIMHMVDGALLLVDAYEGTMPQTRFVLKKA LEAGVKPIVVINKIDRPGARPAEVLDEVLELFIELGANDEQLDFPVVYASALNGTSSYDE DLSTQKETMDPIFETIIKNIPAPVENSDQPLQFQITMLDWDDYVGRIGVGRVYRGKIKVG DQVTVMKIDGTTQNFRVTKLFGFFGLKRNEIKEAKAGDIIAISGINDIFVGETIASAEKP EALPPLHIDPPTLQMDFVANDSPFAGREGDQVTPKKLEDRLMKQTRTDVSLKVEPTDQIN SWTVSGRGELHLSILVEELRREGFEMQLSRPKVIYREIDGQMCEPFEAVQVDTPDEYVGS VIDSLSQRKGEMKNMESTGNGQTRLEFLVPSRGLIGYNNEFMSQTAGYGILNHTFEAYKP VVKNWEPGRRNGALVSINQGQSTTYSLQSVEQRGILFIGAGVEVYEGMIVGQSSRERDIA VNVTKGKNLTNTRAAGKDHSASIKTPKTLTLEEAIEFLNDDEYCEVTPQSIRLRKKILNT NERQKFDKKKNRQN >gi|297148814|gb|ACGQ02000002.1| GENE 149 173830 - 175023 1436 397 aa, chain + ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 388 11 405 434 226 36.0 4e-59 MRPDKQKFLYLDYKILLPYLFLCVVGIVMVYSASSDILLVNGFSPTVYGVKQFIYFIVAV IFLGYPAFNTKMKKIRSWGFIMTYLGFSVFLLLILLAMKIIGGARFAVNGAVGWINLGFV SIQPLEIAKLALILYLAKILDKRANRLVAGNIWHSLSNPTIIAFAIMALVIVEPDFGGTA ILFMIVMVLYAVSGIRAGLVLTWMFILLGLVIGFVSLIIIWNPKFLQNSYQFQRLLAFAH PFQLEKTSGAQLVNSYYAIHNGGLFGVGLGNSMQKRGYLPEPYTDFIMSIISEELGSIGA CLILGLLFYLMWRIMEVGVHAQSQFNALVCFGVTTIIFTETLFNIGAVIGLLPITGVTLP FISYGGSSMFVLTAGVGLVLNISAEEKRTIMMERSVQ >gi|297148814|gb|ACGQ02000002.1| GENE 150 175020 - 175352 261 110 aa, chain + ## HITS:1 COG:no KEGG:lhv_0884 NR:ns ## KEGG: lhv_0884 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 107 1 107 114 92 46.0 4e-18 MSYNQDLKNTNIPARVAIIVFLNQAQDQFKLRQFGDIVYFSKRKKYCLIYVNQTGARELT IKLNKLHFVKKAEISPTSELNFSREHEEGQINKLATEAEQILEENEEYKQ >gi|297148814|gb|ACGQ02000002.1| GENE 151 175349 - 175900 380 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 180 13 193 199 150 42 9e-35 MRIIAGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQFFNGGAVLDLYGGSGALAIEAV SRGFDHAVITDINYAAVQIIKKNVALTHEEGKFEVFKMSDKVALRFLNEHDYHFDIVFLD PPYAKQKITKIMAEIDKLNLLNSKAILVCETDDDTQLEDVNGFTLVKEHHLGKTIVRIYQ RDN >gi|297148814|gb|ACGQ02000002.1| GENE 152 175902 - 176399 323 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 5 165 7 164 164 129 42 4e-28 MVKAIFPGSFDPITNGHLETIKKASQSFDEVVVVIMTNTSKKYLFSAKERAELVEEAIAD LKLANVSVLTRPAALTVDVAKELQTNIIIRGLRNSADFLYEQQINAMNKKLNPAIETVYF MTSSDNSFVASSMIKEIAKFGGDVSQFLPVKAALALKRVLASHEK >gi|297148814|gb|ACGQ02000002.1| GENE 153 176389 - 177420 412 343 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 10 338 12 343 350 163 31 2e-38 MKNKKKLNIVVATLLLLVLVYLGLSWPTNYYIEAPGDANSVSQFVSSKGKTASKNLLMVT VSERQASLGDYLWSYTNPFETRISQKDLLGNQNTNQYMQLQEWYMETSQNNAIYYAAKVA GKTPKKEFLGVYVMGLATNSKFKGKLEIGDIITAVDGQHFKSTKSLMDYIQKQKISQKIT ITVQRNNKSINYTGKTIPLATDKSKAAIGIQLVERSQVITEPQIKINAGSIGGPSAGLMF SLASYQLFTGHDLTHGVKIAGTGTIDDDGNVGMIGGVDKKVVAADKAGAKVFFAPSQQLP GYKKDETNYAVAVKTAKQIHSKMKIVPVTTFNDALNYLKKIQK >gi|297148814|gb|ACGQ02000002.1| GENE 154 177500 - 178150 644 216 aa, chain + ## HITS:1 COG:SP0954 KEGG:ns NR:ns ## COG: SP0954 COG1555 # Protein_GI_number: 15900831 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 10 212 8 211 216 122 38.0 4e-28 MIFEEFKDWIIKYKVWVIVSLLGIGILIFWKFNSNSQDELVSINSTSATSASQSNSLSSS AVSNVSASKNDKVTCDISGAVKNSGIYALKAGARVADLIRAAGGETAEADLSSVNRAILL KDQDKVYIPVKGENSPLDTTASQPSSTTSNNGGEKIHLNSATIADLQKLNGVGQKKAEQI IAYREQNGPFKSVDDLTKVSGIGEKTLAGFKDQLEL >gi|297148814|gb|ACGQ02000002.1| GENE 155 178119 - 180371 1481 750 aa, chain + ## HITS:1 COG:SPy1408_2 KEGG:ns NR:ns ## COG: SPy1408_2 COG2333 # Protein_GI_number: 15675328 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Streptococcus pyogenes M1 GAS # 450 747 1 297 299 216 40.0 2e-55 MQALKINLSYSKRPGFYLLVAFLLISFSFLFLEAKNYWQVGVAIAFCLFFALLLIKKFKK AKLILAIGMFLFGLRLYQSLQLYSYQGQVITIYPDQMKVNKDYISGIGHFKSGRILLSFK SSSFIEAALRQGHKVQLIDIKYEIGEIEQAHNFGEINYRHYYVSQGIKEKIHIQNYQIRN TNYNFMDFYHYLRFKLEKYFASFPRLLGFFVSELVLGENNSDDNQRILDNYRNLGVIHLL SISGLHVGIYTFLISTVCYYLKVTEDESFTIICFCLLLGILLCAGQAGFVRSCLTYFLGG LLKKKAFHISNSDLLGLTAIVHLVITPRLFMNIGAILSYVLVLGLKIVKSDNSFKQGVLL NLILTPLLLFNFYQVNVLTVVFNILIVPYFNFVVMPLTFINIFLFNNFLVVSELFEKILE IGETIINSFAKTNIGMVIFGKISWWQCLFLLVISFGYLIFRLEKFKLKLPAITLIIAYLL IFISIHFPLQGQVTFIDVGQGDSILITTPIFRKSYLIDTGGKVVFGSSKQKKRPQVEQIT LPFLKAQGIDHLDGVFLSHQDADHVGDLGPLLDKIKIDKLYMVQGLMNNPAFLKRIAGKV RKSQIKELLAGDRINGAIKFDIVYPYQAGLGKNEDSLSLTFEVNNKRWLFTGDLDQAGEE IIAQKTPMKVNYFKLGHHGSKTSTSEHFLQIIHPDLVFISAGRNNRYHHPNQETLAKLDK MAIPYLSTQRYGSISYRYGFGKGHFETFLR >gi|297148814|gb|ACGQ02000002.1| GENE 156 180385 - 181371 797 328 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 18 286 20 292 347 102 28.0 9e-22 MLISLFKNSNVQNKNLLIYGEDAFLNDYLIRDYLASSDFAGLDLQRVDCENDGLGELLAS LTEASLFSQQKIIWIKNPIFLTGKSPKKIQADVEKLEKVFANLNLSDDVVIIQANYANLD KRKKITKLSLSAFNSVAVQFKPYEVSGIIKSIIKDEGYSISQSTLHLLLERSDQVMDTAL SNYLKLKLISDDNKKITLEAVQNNVDLSLAQNIFEILSSAFKKNYQEAIERLEDQLREGQ NPVRILAVFENQLEVILSAKILLARRRSEMDVGKELGIHPYRVKLARQTQASIPKIKKLL LEAIKLDQGYKNGTYQGDEFIKMFLLAI >gi|297148814|gb|ACGQ02000002.1| GENE 157 181423 - 181674 396 83 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526394|ref|ZP_03956443.1| 30S ribosomal protein S20 [Lactobacillus jensenii JV-V16] # 1 83 1 83 83 157 100 1e-36 MPQIKSAIKRVKTQANANKRRAAQLSELRTAVKKFKVAQAAGAENASDLHKAAARALDKA ASKGLIHKNKANRDKSRLAKLAK >gi|297148814|gb|ACGQ02000002.1| GENE 158 181881 - 182150 453 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526393|ref|ZP_03956442.1| 30S ribosomal protein S15 [Lactobacillus jensenii JV-V16] # 1 89 1 89 89 179 100 3e-43 MSISKARKNELIKEYATHEGDTGSVEVQVAVLTEDINNLNAHLKAHKQDHHSYVGLLKKI GHRRNLLRYLAENDIERYRTLIKKLGLRR >gi|297148814|gb|ACGQ02000002.1| GENE 159 182292 - 184031 2152 579 aa, chain + ## HITS:1 COG:SPy1020 KEGG:ns NR:ns ## COG: SPy1020 COG0595 # Protein_GI_number: 15675021 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 553 3 552 553 577 52.0 1e-164 MADFNIKIMIVSGVREQGKDMFAVQVNDEIFVLDAGLKYPDSSLFGIDVVIPDMEFFDKY GDKIAGIFLTHGHADSIGALPYILRGHDINIFGSELTIELAKLEVQRENHRRKNHLFHVI DAETEIDFRNASVSFFHTTHSIPGSLGIVVHTPAGGVVYTGDFKFDPSASAQYRTDMDRL AEIATKGVLALLSDSSNAEADFPNASEKEIGDYVSEVFSNATGRIIVAAKASNFTRLQQV FDAAKKNNRKVLLTGRGVNKIVQIALKLGYLQADSKLFVHSKELKKYKDNQLVVLETGRM GEPLQSLQKMATNRHRMVSIHQGDLVFIATTPSHAVETMVAQTSDMVYRAGGTVTQLAYA KHTSGHATGRDLQLLISTLKPKFLIPVIGEYRLLEIHRNLAIATGMKPKDIYITKNGDCL SLQKGRFYLTDPVPGEDTMIDGSGIGDVGNIVLRDREILSDDGIFIAVATIDRKKKKIIA EPKVSSRGFVYIKANKELMNESREVIKKAITTNFEHKKFDWSELKTDVRNSLEKFLYKQT NRRPVVLPVIMEVNQNRHRAMARKKTEHEPRSKKAENND >gi|297148814|gb|ACGQ02000002.1| GENE 160 184024 - 184857 578 277 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00864 NR:ns ## KEGG: LCRIS_00864 # Name: not_defined # Def: BS_ysoA-like protein with TPR repeats # Organism: L.crispatus # Pathway: not_defined # 1 273 1 273 277 236 48.0 1e-60 MTNLSQKNLINLANESIEKKDLAQAEEYLEEALNLVYDEKIAKSLIKVYLSDNKEGQAYD LVKEEPDLFSDLEIFTLYLETLVKNKFYIEFLQLKMLLDNPKLKEVSPETPEKQIKIMRA FKKRKVIRQQDYQSLFKLDLNNFVNFSKSILLDPSQSFALRLAICEDLVKLRIDEDIPII VLNKMTDFNPSLTQLLAKNTVYQEIISSIGDRLSKNPSMLPTVLSETNLLLGTIYPKIED FVDEPDSFSKDLVNFVLDRNGGEHQEILTKIYQNISH >gi|297148814|gb|ACGQ02000002.1| GENE 161 185032 - 186222 1368 396 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 4 396 3 407 407 531 65 1e-149 MAEKEHYERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKQGLAQASDYSQIDAAPEEKER GITINTAHVEYETENRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREH ILLARQVGVEYIVVFLNKCDLVDDPELIDLVEMEVRDLLSEYDYPGDDVPVIRGSALKAL QGDPEQEKVILELMKTVDEYIPTPERQTDKPFLMPVEDVFTITGRGTVASGRIDRGQVKV GDEVEIVGLTDDVKKSVVTGLEMFHKTLDLGEAGDNVGVLLRGVDRDEVVRGQVLAQPGS IQTHKKFKGQVYVLKKDEGGRHTPFFSDYRPQFYFHTTDVTGAIELPEGTEMVMPGDNTE FTVELIKPVAVEKGTKFTIREGGRTVGAGQVTEILD >gi|297148814|gb|ACGQ02000002.1| GENE 162 186424 - 187737 1986 437 aa, chain + ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 424 427 411 55.0 1e-114 MSAKWEKTGKTTGELTFEISQEEIKLGLDQAFNRVKKNLRVPGFRKGHVSRVIFNQYYGE EALYEDALNLVLPNAYTAAVKEAKIEAVGQPKIEPVSMDKDKAWTMKATVSVKPEVELGD YKGIEVPKQNTRVYQKDIDAELEKKREQNAELVLKDDKAAKGDTVTIDYKGTIDGKAFDG GSAENYSLELGSNTFIPGFEDQLEGHKAGDEVDVVVTFPEDYGAKDLAGKEAHFATKLHE VKSKELPKLDDEFAKDVDDSVETLDELKEKIKKQLKEDKEAAAQDAIQEAAITTAVKNAK IDEIPDAMIQEDVDTQLNQYLGNMQRQGIDPQTYFKLTNTTEQQLRAQLSTDAAERVKTN LVLEAIVAKEDLKADKKEIEQEIKDLAAEYNMDEKTVRNTLTDDMLSHDIAVRKAMDLIT DSAKQVGKAQLEKDSDK >gi|297148814|gb|ACGQ02000002.1| GENE 163 187851 - 189134 251 427 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 155 418 258 457 466 101 29 8e-20 MATKYPDGVDEITCSFCGKTQAQVKKMIAGNGVYICNECVALSKEIIDDELKADSLKETK DLPKPVEIKKQLDEYVVGQDRAKKVLSVAVYNHYKRINQMDIDDSTELQKSNIALIGPTG SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIERAQRGIIY IDEIDKISKKAENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIKIDTKN ILFIVGGAFDGIEGIVKSRLGKKTIGFGAESKFDEFDHDADSWNKYLTTGDLVKFGLIPE FIGRIPVISTLDKLQKADLIRILTEPKNALVKQYQKLFEIDKVNLHFSDGALEAISEQAL ERNMGARGLRTIIENAMMDTMYTIPSEKDVAKVEITRDVITKHASPRITRKEVNNDVEMD GTDEDNK >gi|297148814|gb|ACGQ02000002.1| GENE 164 189109 - 189708 547 199 aa, chain + ## HITS:1 COG:BS_ysxC KEGG:ns NR:ns ## COG: BS_ysxC COG0218 # Protein_GI_number: 16079871 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus subtilis # 4 183 1 179 195 199 53.0 3e-51 MARMKIISSEYSVSAVREDQYPRDILPEIALAGRSNVGKSSLINSFLNRKNLARTSSQPG KTQTLNFYKVNNSFYLVDVPGYGYARVSKAQREQFGEMIQDYLETRGNLEGLIIIIDARH EPTVDDIAMYNYALLLDLPILVVATKMDKIKKSQYNKVFSNLRKHLDLDHDNVSVLTYSS ESKLHLAELNKWIEDKIRL >gi|297148814|gb|ACGQ02000002.1| GENE 165 189726 - 189866 216 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLTFKREDELEKMLNQFAIFPDDPKKTAKQKGKKGSEQKPNEKNE >gi|297148814|gb|ACGQ02000002.1| GENE 166 190050 - 190601 488 183 aa, chain + ## HITS:1 COG:mll1278 KEGG:ns NR:ns ## COG: mll1278 COG0778 # Protein_GI_number: 13471335 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Mesorhizobium loti # 2 177 48 228 234 72 26.0 4e-13 MAPSWVDSQPWKIYLAKGKTLEKLKTLHLENSMAGKITASEWPPMHRINWDEFPRDNMAK LNLSRTAFLTKDELDSGWTKVQQNLYYAPAVFYLTIPKNSSNWSIYDLGSFSQTLLLAAT DMGLGSMVAYEFVKYPDEIRQVLPIPEKEAIAVGIAVGYEAKNHINNFKSERLSLDKVLQ IFD >gi|297148814|gb|ACGQ02000002.1| GENE 167 191014 - 191202 225 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256850973|ref|ZP_05556362.1| ## NR: gi|256850973|ref|ZP_05556362.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 62 1 62 62 85 96.0 8e-16 MATSEAQKRANQKWRSHHKDKQQIYNHRSTAKRFVKLYANSHDLDVLDEMIKERRSELEK LG >gi|297148814|gb|ACGQ02000002.1| GENE 168 191286 - 191741 645 151 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297205857|ref|ZP_06923252.1| ## NR: gi|297205857|ref|ZP_06923252.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] # 1 151 1 151 151 273 100.0 2e-72 MKEFNFDFVKKSHLLEKVNPQISKIFNFYKNKQYNEMVFNIRRDVEKLATLLVEQAHLVS DENRGFGLSEKIKTLRQNAIYPATIMRLFDRLRTYGSIAVHSSMNIDEYTAQLALQNYHD LLVFLANYHDGLNARYADILLKRVQRKKVTA >gi|297148814|gb|ACGQ02000002.1| GENE 169 192091 - 193098 1161 335 aa, chain + ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 9 335 3 327 327 361 55.0 1e-99 MKTFIPTDYKATRSLRETEEAIRDIRDIFQIELAEKLNLLRVTAPLFVKKSSGFNDNLNG VERPVAFETKEEPDEDLQIVHSLAKWKRFALKRYGFKMGEGLFTNMNAIRRDEDTDNLHS IYVDQWDWEKIIAKEDRTTEFLKKTVKDIYSAMKITGKKVAKKYGDVFEFPEDIYFVTSE ELEARWPELTAKEREDRICEEYKAVFVMHIGGKLPLSGEPHDLRAPDYDDWKLNGDLLFW NPVLKCAFEVSSMGIRVDEEVLKRQLTLTDTLDRLELPFHKMLMDGELPYTIGGGIGQSR FCMLLLKKAHIGEVQVSVWPEETIKECEAGGIHLL >gi|297148814|gb|ACGQ02000002.1| GENE 170 193147 - 194727 1410 526 aa, chain + ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 12 525 5 525 775 477 50.0 1e-134 MAAKQHIDLDIGLTTPEVSKRIKQGLVNEATDNQFKSNWQIIAENTFTYFNLIFAILAGL LIVVGSYRDLSFLPVIIANTIIGIVQEIRAKHVLSKLTVMNEAEVLVIRDGKKIRQPIEK LVQDDVVILTTGDQIPADGRVLACEARVNEALLTGEADEIKKTIGSELMSGSFLVSGEIY MQLEKVGNESYIAKLTLEAKAMKSVEQSEMVRSINKIIKWVGIIIIPLGIALFSQSYFLN HAGLAESITSMEAAIIGMIPEGLYLLTTIALAMAATRLARRRVMLHNMKSVETLARVNVL CVDKTGTITEPVMTVQKAITSNNVTNSDLNKYLADFSGNMPVDNETMKAVSEKFKTRLFQ KAKLIVPFTSVNKYSAAVFEEYSLVLGAPEMVLRADFEKYLPEFQSYVESGYRVVVFAKY PKEISENSPLTESVSVLGYILINNPIRKEAPATFKYFAKQGVDIKVISGDNPVTVSRVAR EAGIRNSEKYIDLSKFNGEYKDAVKEYTVFGRVKPDQKKKLAKLLL >gi|297148814|gb|ACGQ02000002.1| GENE 171 194724 - 195524 721 266 aa, chain + ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 228 534 764 775 194 50.0 2e-49 MTGDGVNDILAMKEADCSIAMASGNSAAVQASQVVLLDSNFAKMPDVVNEGRRVVNNIER SASLFLVKNIFSFLMSIISLMLTVNYPLRPSQITLISAFTIGLPSFLLALESNHNIIRGN FIANVLSKSIPGGLTDMLAVWVLIAANMALDLGHKDLSTTATMVLVAVGMMVLYHISEQF RLGVMVIAFFTIVVSIVFFHHFFALTMISGRSIFLLVVLFFAEVSIFRWLSAIADGMAEV GATLVQNGRETTFAQVKAAYKRGKNN >gi|297148814|gb|ACGQ02000002.1| GENE 172 195672 - 196472 878 266 aa, chain - ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 7 265 16 275 275 327 64.0 1e-89 MKTNTKLTKKDLFQANWRWLWASQLSWNYEKMMAPGYFYTVLPFLKRFYQDDELVDMMKM HSQFFNTNAFTGPFIIGMDLAIEEHQGYKAKETVAGIKTGLMGPLAGVGDTIFGVIIPTI CGSIGAYMGLKGNALGAIIWLLVNIFILFARFAILPMGYYQGEKLINSAEGKLNAVTDSA ILLGVTVVGALIPTVIKADVPFVFSAGKVTLKLQTVLNQIMPSLIPVLLVAFVYWLLGRK KMTSTKVILFVLVLGIVLSYFHILGA >gi|297148814|gb|ACGQ02000002.1| GENE 173 196462 - 197244 782 260 aa, chain - ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 2 260 3 267 267 270 61.0 2e-72 MIAWWQIILLTALAFWMILDQLTLVTINSPLLIGMISGIIMGDIKTGLVVGSTLQLMVLG VSTYGGASMPDFMTGAIVGTVYAVLTNKGTQFAIGLAVPVGLLMVQLDVLARFFNTIFQH KMEQAIKNNNTKVASRNAYLGFLAWGLSRAIPVFILLVIGNDVVKTILRVVPVWLTNGLK VSGGILPVVGIAILLRYLPTKKFISYLIIGFLAAAYLKMPMLGVALLGAALAILNYKREN TPTMQTNTTSYENAEGEYED >gi|297148814|gb|ACGQ02000002.1| GENE 174 197244 - 197735 395 163 aa, chain - ## HITS:1 COG:lin0021 KEGG:ns NR:ns ## COG: lin0021 COG3444 # Protein_GI_number: 16799100 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 3 155 9 161 162 179 60.0 2e-45 MFVRIDERLIHGQVATMWTNALKLTRLMVIDDQIVKSPIQKTALKTACPNGIHLSILTAA GAAKRIKQGQYQGQTVLILVKRPAILKQLVDLGLKLPEINVGNMSTKEGSQQVAKSVAVT VSDIADFKYLADKGLTIYHQMIPSEAREDFMNLLKSNETGGQN >gi|297148814|gb|ACGQ02000002.1| GENE 175 197762 - 198157 308 131 aa, chain - ## HITS:1 COG:lin0020 KEGG:ns NR:ns ## COG: lin0020 COG2893 # Protein_GI_number: 16799099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Listeria innocua # 3 107 2 105 133 83 41.0 8e-17 MPNLLLISHGSYAKATLSSCEMILGQLKNIKAIEFKQTMNQDDLLKEIEVAAQTFTKLDA IIVDFTGGTPANTAIRFQAQHPEVKIYTGLSFSLLLAVASGTPFSDAYKQVAQTSGLLGE KSRKKKTRLAL >gi|297148814|gb|ACGQ02000002.1| GENE 176 198523 - 199332 867 269 aa, chain + ## HITS:1 COG:alr1528 KEGG:ns NR:ns ## COG: alr1528 COG2746 # Protein_GI_number: 17229020 # Func_class: V Defense mechanisms # Function: Aminoglycoside N3'-acetyltransferase # Organism: Nostoc sp. PCC 7120 # 14 250 19 262 274 147 33.0 2e-35 MEEDRELIYSDTDLAQSLREMGISSTDTLLVNLRMSALGIFPGKQQSLFSALKLLVKDGN IILPSFSLHLKEPQVRAELKEKIMKKMPAFDSEATPVTGLDSFMEYFRMQKEVLRDNHPI YSFSAWGKDKETIVKAHTFDLPFGKQGVLGRLLRLNAKVVCLGTNFETCLAPYLAESEIS RPLIQEKAPVLIAGEKVWVSFNNVELNKYHDYEDLGTHFLQKYPVKIANLPAGQILIFNL QDFVNFACDWYQKKDRVHLLNAGWKGPEI >gi|297148814|gb|ACGQ02000002.1| GENE 177 199537 - 200475 935 312 aa, chain - ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 2 306 3 309 313 242 42.0 6e-64 MKNIYFNHDGNTDDLVSLLLLLQAPDINLIGVSAIDGDGDVVASCEASRKIIDRFNTFNH QLEVAMSNSRAHHQFPEEWRQSTFTFNSFPILNEHGTINTPAAKNPAHIDMAEKIMAQTE KTTLIMTGPITDLARALDYEPSLENKIDKLYWMGGSLDGHGNVFVPYYDTTQEWNAFWDP EAVERVWNSNIDIQMVGLESTEEIPLNEDLKQHFASLRRYPAMDLIGLGYSLIISSQPGN QYYLWDVLTTLSALYPNLVETRKAKSYVLTQGAAAGRLVESKQGRPMTLVTKADKKKFFE KFDELALSAKFK >gi|297148814|gb|ACGQ02000002.1| GENE 178 200541 - 201923 1281 460 aa, chain - ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 2 458 3 462 463 444 52.0 1e-124 MNIFRKESINKYLAQDHKFSKTLTAKDLISLGVGAVIGTGIFILPGTVAANYAGPGVTLS FLLAALVCVLSAMSYAEFSSTMPVAGSAYSYGNIIYGEIIGWILGWALILEYMLAVAAVA AGWSSYFQSFLAPFNIKLPAAFVSSFNPSKGTYIDIIAIGIVLLITLLLSRGMRDSVKIN NFAVILKIAIIVLFIIVGANFIKPANYQPFLPYHFSGVIKGATTVFFAFLGFDCVSSSAA EVKNPQKNMPLGIIGTLLIATLFYMGVSIVLTGMVNYKALDVANPVAFALQFAHQDWIAQ LLSFGALVGMATMMLTMIYASSRLVYAMARDGLLPQSLAKLSTKNKTPQISLWVVAIIIS LGAGVFSVDQLTSLVNFGTLLAFTFVSFGILPLRKRKDLPNNGYQMPGYPVLPILSGLIC LYLLTQLNIDVYIMATIWFSLGIIIYFLYGYKHSLLNKNQ >gi|297148814|gb|ACGQ02000002.1| GENE 179 202832 - 203443 247 203 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 3 168 6 166 199 99 33 2e-19 MTEWMISLINQFGFWAILFLIALENVFPPIPSEVILSFGGFLTLHTKMSLWEVVLASTIG SVLGALILYYAGSLFTEVRLKKLVNNKFIKMLGFKEDDVSKTIAWFNKHGKGAIFYGRFV PIIRSLISIPAGTAQVKLPLFVGLTFLGSLIWNTVLSSLGFYFGSKWDIVVQIIDDYAIL CAGLLIIGFGIGCVYWYKKRIKK >gi|297148814|gb|ACGQ02000002.1| GENE 180 203561 - 205363 1543 600 aa, chain + ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 1 596 1 586 603 602 51.0 1e-172 MANQLIENKLKLLPEQPGCYLMKNINGTVIYVGKSKNLKNRVRSYFKSKQVGRRAELVKE IADFDIITVTSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITNEKDPQTRLTSIVH KDNGYYFGPYPNVYAAQATLRFIQKVWPLRRCNGHQGRPCLYYHMGQCLGACFQEVPRSK YEAQIAKIKRFLNGDITQVKQELTEKMQIASGNLEFERAAEIRDQLRYIEQTVEKQKIIS NDHTQRDIFNFYVDKSWISVQIFFLRQAKLLRRETKMFPLMDLSDPKDEFMSFIVQFYNQ KNRILPREVLVPEDLDNGNLSEVLGVKVRTPQRGTKRDLLKMAKDNAKLKLDEKFRLLEL GNRKTKGAQAEIFKALGLPYGHIIESFDHSHIQGTDPVSACVVFKDGEPFKTAYRKYKLK GEVEHQNGADEVGNTREVVRRRYSRMLKEHSRLPDLILMDGGQIQVDACLDVLRNELNCD IPVAGMVKDNHHHTNHLIFGDPINGKPLELIPMDPKSEGFYLMTRIQDEVHRFAITFHRQ THAKNSLASKLDGIKGIGPKSRNKLLKKFGSLKKIKDASVEELQDAGLTLPQAQSVKLTL >gi|297148814|gb|ACGQ02000002.1| GENE 181 205447 - 206745 1636 432 aa, chain + ## HITS:1 COG:SPy1333 KEGG:ns NR:ns ## COG: SPy1333 COG0536 # Protein_GI_number: 15675273 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 1 431 1 436 437 429 58.0 1e-120 MPTFVDQTKIEVQAGKGGDGMVAFRHEKYVPNGGPAGGDGGRGGSIIFVADSGLRTLMDF RYRRKFKADNGENGRIKSQYGRGAKDLYLKVPVGTVVSDFFTGEIIGDMTKKGQELVVAK GGRGGRGNIHFATSVNTAPEIAENGEPGEFRTLKLELKVLADVGLVGFPSVGKSTLLSVV TKAKPKIAAYEFTTLTPNLGMVVLNDGRDFSMADLPGLIEGASQGVGLGIQFLRHVERTK VILHLVSMDPNNGRDAVEDYKIIRKELSNYTADLTKKREIIVASQMDIPGSEEKFTEFKQ GLEKLGIEEPIFKISSVTHQGLELLMNKAADLVAEVEASQEVEEVTTEEKNYKFKPEVDE SFKVECVGEHEFIVTGAKIERLVQRTNIEHQDGIMLLARKLKNMGVDDALRAKGAVDGDD VTIGDISFEFVQ >gi|297148814|gb|ACGQ02000002.1| GENE 182 206764 - 208680 1380 638 aa, chain + ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 6 632 3 600 605 383 39.0 1e-106 MQRKNRFIKGYSGLRAIAVIGVILYHFDPNTFIGGYLGVPIFFVLSGYLVTDHILASYEK TGYYDNKRFYLSRLKRLYPQLITLLWASGAYILMFQQQTLAKFNQIVITNLLNIYNFWQI VNGQSYFERFAGNVSPFTHLWTMSIEGQFYIFWPLIMMALIKFCKTRYRAFWIIIGFSIL SALEMAILYQPNVDTSRIYYGTDTRFFALGLGAALAFVWPIRHLNPKINRSDWIFLDITG AVSLLGMLWLFLSRIMDPQATFAYRGGMFLFSLFTTILVAIIAHPASHWNQIFTNRIFDW IGSRSYGIYLYQFPVMVFFEAKFTDMANHAVLYRLIELAIILGLAELTYRFIEKPFSKIS FKSIRIFITHLKDSEKNAHLRIASGISTLILALGTIALIKSPAVKVVNANKSQLAERIER NKANQEKSNKQLIDKFKSTKKKESKSKVYVEAEQAAKDKPVNKEFEKYGINQVELQLAQK VHVTAIGDSVMAGSSDMLKQLMPNALIDAAVSRQLVPTIGLFDQYKGQGALAENVLIGLG TNGPFSMNDVDHLMKIIGPKRQAFWISIHVPSRQWQGPVNDLIAKASAKYKNLSVIDWYS YSKNHNDWFYGDQTHPNIEGSKYYSSYITKEILKKAKF >gi|297148814|gb|ACGQ02000002.1| GENE 183 208696 - 209625 925 309 aa, chain + ## HITS:1 COG:SPy0924 KEGG:ns NR:ns ## COG: SPy0924 COG1234 # Protein_GI_number: 15674944 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Streptococcus pyogenes M1 GAS # 1 301 1 305 309 330 54.0 2e-90 MEIQFLGTGAGQPSKQRNVSSLALKLLDELNEIWLFDVGEATQHQILRTNIRPRKITKIF ISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGLEQFVTTALRISKTKVSYPIHFVEL KDDQKIFENAEFSVYCKKLDHRVASFGFRVVEKSHPGVLLMDKLAPYHLPNGPILGQLKA GKVVELEDGRVLNGKDFLGPEKKGRIVTIIYDTRITPSIAELAQDADVLVHESTFAGPEG KMAKAYYHSTATQAAEIAKKANVKRLFLTHVSARYLGSKAHILEKQAQKVFPNTVLVNDL DVFDIPMRG >gi|297148814|gb|ACGQ02000002.1| GENE 184 209629 - 210423 789 264 aa, chain + ## HITS:1 COG:BS_yqjQ KEGG:ns NR:ns ## COG: BS_yqjQ COG0300 # Protein_GI_number: 16079435 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Bacillus subtilis # 8 257 7 252 259 212 45.0 5e-55 MNNSLRNKVVVITGASSGLGRSIALQSAERGANLILIARREEKLLEVAAEAKELSGAEVW VYPTDMGKANQIEDTFKKIIVAVKQIDFLVNAAGFGDFDDFFDQNPQLITNMFQVNVLGL IYFTRLIARVMIDQKSGQVINLGSMAGKIPTTKSAVYSATKAAVIQFSNVLRLELKPFGV KVMTVNPGPVYTNFFNRADHTGDYVHNVQSFMLDPDDVAWQVVHYFGSDKRELNLPLSLA AMAKLYNLFPSAGDYLSMIFGSRK >gi|297148814|gb|ACGQ02000002.1| GENE 185 210423 - 210683 296 86 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0876 NR:ns ## KEGG: LGAS_0876 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 3 83 1 83 108 63 59.0 2e-09 MDMNKQKNLVIGLAVSLLLIIFVLLNTEPVTINFLVVKPKLPLIVVLVIMAFLGALVSWL MGEKSQNDQKGSWGFFKKKNDKKINE >gi|297148814|gb|ACGQ02000002.1| GENE 186 210790 - 210975 321 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526363|ref|ZP_03956412.1| 50S ribosomal protein L32 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 128 100 6e-28 MAVPARKTSKQKKRSRRGHIKLTVPAMHYDATTGEYRLSHRVSPNGYYKGRQVVKKANNN D >gi|297148814|gb|ACGQ02000002.1| GENE 187 211044 - 212609 1733 521 aa, chain + ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 505 1 501 519 365 38.0 1e-101 MKLVFLHTSDTHGFLLPTDYQDKNDYEAPISLSRVSTAIKKQREKWGADNVVVTDAGDCL QGSPLASFCHKDSSFKRLDQFTAAYNEIGYDGRCLGNHDFNFGLDYLKHYIEKNTASFVN DNILDENTDNPAFGQEYKIIERHGVKIGLLGITTQYVPHWEPEEHIQGLKFVSAFEQIKK LAPKLKKDVDILAVMYHGGFESDPVTGVATEPHNGENEGYKILTEVPEVDVFLTGHQHRR LNLVVNNTAIVQPGYRGECVAQVVIDLDKTSDGVKINNLETSLIETKDYEPDSEIVKDIT DVDEKAQAWLDQPIAHLSEPAPIKNAFEGRTKGAPFINLLQQMQIYFTGADISATAVMSE KARGFTNQTVTLREVILNYPYANQLCKVKLTGKELREILEHTATFLEKDNEGNIHFIDRY IKPKPQLYHFDVFYPLHYEVDLSKPHGQRVVELTLYGKPIEDEHIYHLAVNNYRAMGGGF YPAYSMDKIELMLDKDYVQMFTEYLTSGEVKVDTKQYYKFY >gi|297148814|gb|ACGQ02000002.1| GENE 188 212714 - 213046 231 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297205878|ref|ZP_06923273.1| ## NR: gi|297205878|ref|ZP_06923273.1| 1,4-alpha-glucan-branching enzyme [Lactobacillus jensenii JV-V16] # 1 110 1 110 110 200 100.0 2e-50 MKKVTSFCQNHPFISPVIVFWSIVFLMFFGPKILTSIKSAYFNYQITQVVSEKKPQAKAL DMMQEDTESKVYYQTYEYKDRKYILACYKKSGRRHFDWYSLKTGKIEHLK >gi|297148814|gb|ACGQ02000002.1| GENE 189 213055 - 213438 320 127 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297205879|ref|ZP_06923274.1| ## NR: gi|297205879|ref|ZP_06923274.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] # 1 127 1 127 127 206 100.0 3e-52 MKNFGQKHPLMVWILTLLFNLLILVGIYLSYLSFQEEHDTKVAYSEIELALKKQNINTHE IKVAQPFVRNQRAFTNTIWYTLAFTFKGQKYEATYQEELIDKIITKDWAIRYKPEYRVKI EKVKEFQ >gi|297148814|gb|ACGQ02000002.1| GENE 190 213489 - 213692 348 67 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0879 NR:ns ## KEGG: LGAS_0879 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 66 42 107 107 85 66.0 5e-16 MRYIISVIWSTIFMSIIGFIAAALTETQFNPMQAIRVGIVFGLLFAVIIPFIAAKSYKGK TKYSKML >gi|297148814|gb|ACGQ02000002.1| GENE 191 213804 - 216923 3414 1039 aa, chain + ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 6 1017 6 1018 1108 737 42.0 0 MQVSGLQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKVNLK PLLGMTIRLNGIVDQAHRYDLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLTLKQLA KYLSDQVFIVPANITSELRYLAENNEKLGSDFIRELQKIIPSSSDLYLGAYAGKNQPYID YAKSMAKQFNLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLALQKGSHYLRTS GELVSAYNECSILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKIYLRQLVQKGL AKRFNGQPIPEIYQKRLDYELKIIDQMGFDDYFLIVWDVINYAHSVDITTGPGRGSAAGS LVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRRDEIIKYMFEKYGMDHAA QILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSKITLAQAYQESKALQLLVNA SELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQAGTLGIPVTQQTKAHVEE LGLLKIDFLGLRNLTILGDTIELLAKDGIKLDPKRIPLDDIKTLQLFQKGKTDAVFQFES QGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDHFINRKQGKEPITYPDSSLAKLLQPT YGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQEREKFIAGAVKNGHPQAT ASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAFFTALLNSVSANRVKAGEY ITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLKAIKGLRVDFLRNIAGLPKNFTSLAD FLRKIDAKFLSEQAIAAMIKAGCFDKIDENRKMLLANCKEIVENIKFTGQNETLSEGLGG IRLEQAPAPNSNEKATMEEEVLGFSTTKTPILVVQKYAERFNAQALNSFTVNETGIAVGK LIKLKLIRTKKGDTMAFSTFRDASSEQEITIFPGIYNNISNILKEGQIYLLGIRTQSDRY DAGKVQYMLTNLKLVNFTE >gi|297148814|gb|ACGQ02000002.1| GENE 192 217090 - 218049 1212 319 aa, chain + ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 318 1 318 319 381 61.0 1e-106 MKRIGILTSGGDAPGMNAAVRAVARTAMANGIEVFGIRYGFAGLVAGDIFPMTSDSVANI LTRGGTFLYTARYPEFAQEEGQLRGIEQLKKHGIEALVVIGGDGSYHGALALTKRGFNSI GLPGTIDNDIPFTDLTIGFDTACTTAADAIDKIRDTASSHQRVFVINVMGRDCGDIAMRV GVASGADAIVIPEKPYDIEAIANKLKKSFANGKDHGIVIVAEGVMSSEDFLKELLKYGDF DARTEVLGHMQRGGEPTVSDRVLASKMGSYAVKLLMEGKGGLAVGIEDNHLCTHDIVDLF DSRHVGDYSLLAMNDDLSR >gi|297148814|gb|ACGQ02000002.1| GENE 193 218081 - 219850 2475 589 aa, chain + ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 479 1 475 475 528 59.0 1e-149 MKKTKIVSTLGPASNDLETIIKLIEAGANVFRFNFSHGDHEEHLSRMKLVREAEKKTGKL VGIMLDTKGAEIRTTEQEEGKFTIHTGETMRISMDATKKGNKDKIYVTYPGLYDDTHVGG HVLIDDGKVDLLITEKDEANKELVTKAQNTGLIGSKKGVNAPGVEIRLPGITEKDTDDIN FGLQHGINFISASFVRKAQDVLDIRQLCENAGQDHVKIFPKIESQEGIDNIDSILQVSDG LMVARGDMGVEIPFMNVPFVQKTLIKKANALGKPVITATQMLDSMQENPRPTRAEVTDVA NAVLDGTDATMLSGESANGLYPVQSVQAMHDIDVRTEKQIAQRNTLALQRFEEYQGSNVT EAIGESVVRTAEELGVKTIITATQSGYTARMISKYRPNADIVALTFDEKIQHSLGIVWGV QPLLTEKPTSTDDMFEKAAKIAKENGFVKDGDLVIIVAGVPVGESGTTNLMKLELIGSKL VKGLGVGTGSVIGKAVVANSADEANNKVEDGDILVAKTTDKDYLPAIKKASGLVVEASGL TSHAAVVGLSLGIPVIVGATDATDKIADNTTITIDARRGAVYQGEAANL >gi|297148814|gb|ACGQ02000002.1| GENE 194 219976 - 220854 458 292 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 1 271 1 267 285 181 36 8e-44 MLGTIQKGKVIDKNDEAYYVQVNGVTYELNKLEVTQEQMPQLGDIVQGFIYDNKNHKKQM TQFYPFAMPDQYGWSKVTEVRRDLGVFVDIGLPDKDVVISLDDLPLDKAKWPRIGDRLLV TLETDHKDRIWAKMADENVFEQLSSKFPQNMKNKNLLVTVYATRPVGDFVLTSDFYLGFI HESEMMTPLRLGEQIKARVVGISKYGRLNLSVLPRAFEEIDEDSQMILMSLRREASKSLP FYDKSDAQDIKNHFGISKSAFKRAIGRLLKQGLIVEDKDAGKITLVDKNEEE >gi|297148814|gb|ACGQ02000002.1| GENE 195 220841 - 221743 678 300 aa, chain + ## HITS:1 COG:lin2069 KEGG:ns NR:ns ## COG: lin2069 COG4974 # Protein_GI_number: 16801135 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 7 300 3 297 297 270 47.0 2e-72 MKKNNLDQVADFLRFCSLERGLSKNTVDSYQLDLNQFIEYLDKEKITDWPEDPLIIDSYL AKQRDEGKKTSTISRGITTLRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVE QLLAQPDIKTTTGLRDRAILELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLV PVTDFALNWLDKYLKNVRDPALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLAKID KDITPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYQKTHPRA >gi|297148814|gb|ACGQ02000002.1| GENE 196 221746 - 222084 475 112 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01011 NR:ns ## KEGG: LCRIS_01011 # Name: ribT # Def: reductase # Organism: L.crispatus # Pathway: not_defined # 1 111 1 111 120 130 54.0 1e-29 MLVKYKKDYEKIAMGLLSYLPDLRNLKNLQEEMSLYDNSGEFFLYLFRDKESDLIGIVGI QLLEHFVLIRYLSLAPGFRNHEYEQAIIRDLREEFPKKRLTALPDYSYLFKD >gi|297148814|gb|ACGQ02000002.1| GENE 197 222087 - 222815 569 242 aa, chain + ## HITS:1 COG:lin2065 KEGG:ns NR:ns ## COG: lin2065 COG1354 # Protein_GI_number: 16801131 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 239 5 242 249 129 38.0 6e-30 MTENLKVELPNFEGPLDLLLHLIRSQEIDIYDIPIAEITRQYLTYLEKMKELNLQLAGEY FVMASTLLRIKSQYLLPKNDFVELEQEPDIDPRQELVEQLVQYSVFKKISKYLKQRNDSV PVTVAKEPSVGQAKSISPLPLGQLSESELANTFSLLIRRYKLRTPESATVKIKYSSVSDM TKMLENKFSQVTRISFFSCIQKIKTLDDVISLFLAILEMSKNKKIKVSQGREYGDLTLER ID >gi|297148814|gb|ACGQ02000002.1| GENE 198 222819 - 223418 705 199 aa, chain + ## HITS:1 COG:SPy0367 KEGG:ns NR:ns ## COG: SPy0367 COG1386 # Protein_GI_number: 15674517 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pyogenes M1 GAS # 3 188 2 183 183 142 41.0 5e-34 MATKLAELESLLYLAGDTGVEQANLCQLLEIEAPALRELAKKLTQKLSEDENSGLQVSLI KDTYKMTTSYDVADVVEKYYQKDLSKTLSQSALEILAIVAYRQPITRVEIDEIRGVNSAG AIQTLIWRGLVKTSGKKDVPGHPNLYVTTDYFLQYFGYESLADLPVIEDFENESIDEKGQ VDLFKAKDSNNPQNRLGER >gi|297148814|gb|ACGQ02000002.1| GENE 199 223418 - 224131 780 237 aa, chain + ## HITS:1 COG:BS_ypuL KEGG:ns NR:ns ## COG: BS_ypuL COG1187 # Protein_GI_number: 16079373 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Bacillus subtilis # 3 226 2 225 229 261 61.0 1e-69 MAERLQKLIAQAGIASRRKAEKMITEGRVAVNGRIVTELGTKVEPSANIEVDGLPIQKES KHTYLLYKPRGVISSVKDDKGRKTVLDFFEESPYRLYPVGRLDYDTSGLLLITNDGELAN KLMHPRHMVDKVYVAKIKGFLTPEEIYSLKHGVRIDGKKSAPAKVKIISTNREKGTSIVQ LTIHEGHYHQVKRMFKAVGHLVDKLSRERYAFLTLKSLTAGKYRELTREEVAKLKSM >gi|297148814|gb|ACGQ02000002.1| GENE 200 224014 - 224484 169 156 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTSEKSIFKNGKIGIIGNSIFITTKAITPIITAAKVLARFDLVLVINISYKQKGLRSKRQ TFEKVLCNFPLSACLLPSRLYYRYLRVQPHKWVADSNSRSGFSPCLEDAFLLNSASVYYM LFSLATSSRVNSRYLPAVSDFKVKKAYRSRDNLSTK >gi|297148814|gb|ACGQ02000002.1| GENE 201 224348 - 224920 528 190 aa, chain + ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 12 166 10 166 203 85 35.0 4e-17 MTKTRSNLAKTLAAVMIGVIAFVVMKIEFPIIPIFPFLKMDFSDVIILIGSFLFGPVSGI GMAFIKCFLSLALSGFNILSLVGQIAAFLASICYIVPLYVVSKKNEDKFIMQIAAVVVGT ICLTLAMSLANIWLLMPMYAKFANFSFPATYILYGVVPFNVIKGVINGILAVMVIKFVLP QLENFASKRF >gi|297148814|gb|ACGQ02000002.1| GENE 202 225014 - 225514 435 166 aa, chain + ## HITS:1 COG:no KEGG:LBA0966 NR:ns ## KEGG: LBA0966 # Name: not_defined # Def: putative N-acetylmuramidase (EC:3.5.1.28) # Organism: L.acidophilus # Pathway: not_defined # 4 165 2 152 153 63 33.0 3e-09 MNNNSSNNGPYKHFKRPEQGRVQQSKPKKAHHFVKWVIGLVIVVLVGVPVYLTFNHKSSS SDVTTPTRVKTSASSSASSKSKKIKIVKESSSSSSASSESSSSSQAASSSSVASSSSSEL RTYVVQDGDSLSSIAAAHGMSVDTLARLNNITDATSIRAGETLKLN >gi|297148814|gb|ACGQ02000002.1| GENE 203 225560 - 226225 228 221 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 3 211 37 279 863 92 27 4e-17 MQVAIDGPASAGKSTVAKIIAKKLGFIYIDTGAMYRACTFIARKENIDYGDEAHILTAIS QNKIEFKSENGEQRVYVAGEDVSLAIRTPEITANVSQVSALKGVREKMVELQREMAGSTN VIMDGRDIGTTVLPDAELKIFLVASVHSRAKRRLLDYAEKGIHEDLAKIEHDIAERDYKD SHRAISPLKKADDAVEVDTTNMSIDEVVSDILAKIKAKMAK >gi|297148814|gb|ACGQ02000002.1| GENE 204 226320 - 227528 2004 402 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526346|ref|ZP_03956395.1| 30S ribosomal protein S1 [Lactobacillus jensenii JV-V16] # 1 402 1 402 402 776 100 0.0 MSDNSNQFLDALKEMQGVEVGNIVDVEVLSVEDGQIAVGVQNAGVEGVITRREFTQDRNA DLHDLVKPGDTFKALVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDYEAGNAIEGTVT SSVRGGLIVNVGTRGFLPASLISNHFVSDLKPYIGKSIKVKITEIDPNKNRLIISHKELI EEEREEAFETVASQLVAGDIVEGKVSRLTNFGAFVDVGGVDGLVHISEISYKHIDKPSDV LKTGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSELSEGEVVEGEVKSLTSFGAFV EVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLSINPDEKRISLSIKQAQPAAEG EGNNARRSASRNDSVAKKYMSDNNDNGFALGDIIGDQLKDRQ >gi|297148814|gb|ACGQ02000002.1| GENE 205 227607 - 228917 1551 436 aa, chain + ## HITS:1 COG:SP1709 KEGG:ns NR:ns ## COG: SP1709 COG1160 # Protein_GI_number: 15901543 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 1 436 1 436 436 544 62.0 1e-154 MALPTVAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGG ITWEGGRIEDEIRAQADIAMEEADVIVMITSVALHLTDLDERIARILYRSSKPVILAVNK ADNPEQRADIYDFYSLGLGDPIPISSTHGTGIGDLLDAVVENFPPEADTKDEDEIAFSVI GRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAGIRRRGKVY EKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMIIVVNKWDLPK KDSNSAKDFTRVIREEFQYLDYAPIIFVSAKTGKNLDQLPDLIKEVAENQSQRIQSSVLN DMLIEASKLVPSPLIKGKRLRVYYMTQVAVQPPTFVVFVNDPELMHFSYKRFLINQLRDN FDFTGTPIKILPRKRK >gi|297148814|gb|ACGQ02000002.1| GENE 206 229136 - 229411 553 91 aa, chain + ## HITS:1 COG:SA1305 KEGG:ns NR:ns ## COG: SA1305 COG0776 # Protein_GI_number: 15927054 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Staphylococcus aureus N315 # 3 91 2 90 90 105 75.0 2e-23 MANKAELVAEVAAKTKLTKKDVAAAVDAIFASIQDDLAKGEKVQLIGFGTFEVRNRAARK GRNPQTGVEIEIPASKVPAFKPGKALKDAVK >gi|297148814|gb|ACGQ02000002.1| GENE 207 229525 - 230775 1449 416 aa, chain + ## HITS:1 COG:lin2036 KEGG:ns NR:ns ## COG: lin2036 COG0457 # Protein_GI_number: 16801102 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Listeria innocua # 1 413 1 417 417 174 31.0 4e-43 MSYSEQLLDAIEKHDFSQNNILLKKALDSDSSELLAALAENLTDMGFSDMAKDVYRSLIA KNPEEDLFKVYLAEILLNDGQDDDALSLLYSIDENSDSYLEILLVQADYYQSLGLFETAQ AKLQEAHELAPKEDAIIFGLAELAYSTGKNELALHYYQDLATRQKHFGEINLRERIFASL AKLGRYEEASEIIKQYGQDFIDIDIRYEAGLVLLSTKDYKKAIEYLTGVLEQASDYVNAY PLLAQAYEANGDNEKALETAQTGLTYNEYDETLYALIGRVAANCAKYDLAVDMLKKGLSF APDNMDLRVQLSNLYLYLKKDEENLQLFREVDEENLEPQARWNIAVSLYRLEKYQESRKE FLLAYPNLQNNADFLKDMIRLFNIDGERVALKDLLQKYLELIPDDEEMLDLYDELV >gi|297148814|gb|ACGQ02000002.1| GENE 208 231004 - 260331 45957 9775 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0942 NR:ns ## KEGG: LGAS_0942 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 7679 9634 957 2700 2833 301 25.0 7e-79 MGVSKNNFRNKMEQSSRQVQHFGFRKFSVGLTSVLLSTSLYFGFMGAGAQAATTPLSQTS SESTEQTSSASSSSARSELNKEVLSSSTSSASSSVKSADKTDLQKLYDEIVKSEEKNQLA SQLTSVKSILNNESASQTEVDSALASLKQAYIKALSDNAKKQEQANAQASETKVAKQTQE TQPVVKDNSLSVTKVANQDNATVAALTTNLAAQASNSNAANTATNNDAGAESEAISTSET APNGIDQVAKQTAATTVTNANEVVTSSDQTQNRSKREAVTNAEADKSTTGSTIQGRNIKV TFLGGNQFYASSDGDDQPTGAVNPGVDVDQGYYVAAVSFQGKAGDTVKITLPYVKGFSPS KLGAQADLPASVTSQKEETITGEDGRQYLVETYNLTNNIESLVTVYFQYQNQGVWIVSGK DSAKIYNLSASDIGDKTYQIKAVIGSGEDPEKDKDKQESSADFTTHIKENFTFARMSNDS SLVAGSGQDPYPDGTPKVIAGKEFSTFLHVWDNVSLPANNGQANYWGIYGGTNLGTTITI PTPEGYQIDAVGTMNVNGWDSKGYHITQDGPGKDIIIQIDSGYGIMYQDTPQASYRILGR FTQAIPDFDTRVWASGPIHVEKTNSYDSTGKKVTISYTGDSTWNETIMGQDSIDKAKKAS QTAIDPDTGMPKEASSIAGNYGSVNSYKVPKRKSEKLFLDAEPDDNEGSFRFDTGTAQSF TTKDGNPTLYFTFDKKLNVYKLSTPNAAFMQGTNFINNYHYTLTRADGSTQTGKIDAGGI IENANPTSAIVSIVLTPDQVSSASIVNHYFDKHNQYTFYGRVVNKNLATGETKSNVGDKL TATFQFRSTTAQGVVINSPIAKLTQTVDETEASLKFEALPDTSVQAGDLQGWTIRGLYDD SSKTASGYSSYEPIIYYVLPKGITYRNAPGLAAGNFTAGGNTAIPKVSTFVNSQGEQVIK VDYTGTKSYYTWPKDKSGINDQYTIGAVPGLDVLAGNYKGSVYIKSTTPMDSTLNPKATS DDAKNLLDLAGDATNLYHVSDLTFKVNSGDIVNTVTSAKVDNGAWSDVVKTDVNPTHFKD HTISFGWTLNNQASDGVKGIVSVAEVPQIDKHGNSMNFQLTGPITLPSNLTNAKAYYYTG DFNMDNTEVSGKPDLSQWQTADQITDWSKVKYVAIAIDSLPPKSSSGRIEITGYITQSRY SNAGTAFLPTITYTKKPDNTDNGPLSILTKTNTDGRRRAAEVDATVMDSLDVKAVFPSDS GIADIDLGRGPVYTPNAGEVYTESDYPDSMADGKIPAGWKLDKKVLVGKDGQEYAWGSSV FYAITGEPYFTDLHVEFRYVHNQRVITPGDFPDKDKSDPVDGITYRDVVKTVTRTIRIHK TDGTIETVTQPVDFYRTITYDEVDKKIIATSAYKPDDSLWAAYNVPSVQDKVIVYTKTID GKTTDPTIISDGNVPEETIDSNTNDEFVDVYYQNPGTKKPDAQKTVTRTVVVNFPAGYSV DATALKANDGNGVTTTVNGQTVTRTYTTTMTRTVSLKSDGTWQTTDWQYTDRNWPDVTNG SDLLPAITKYTPTVTDNIKKTTVDSINAETVDENTQNESFTIDYVQNGVIQIVAVDKSSN NKPIALGDLTTTMEGKDGSNIDQTTLNGYIDAIKQRLAGQNYKFDSQTPTSNPTTYADQT ITLYFTHNTQDFTPDNKPSDAEDLEKTISRTITVNFPDEAHAQAFAGQAGYTVNGKSVTR TDTASFTRTATKDLVTNTYTYSPWVVKGTSQASATLPGLNYGEAFLPEISRYAPNRSSVS SVSVDDAYIKAGTTPESVTISYAPVSSTFQVVLEDQDDGNKVVKAFIFNNKVGETHTYSD TEKSLPANYEWADENNKLGDSITLSDTTPAVTVYYVKHMHKTTTGTKDVTRTVDGTKPDG SAINYSDKVTFNYTTDTDLVNGKTTTKYDHDSQSFNAVADDVAPATINGYTRVLNGGSLD AQTVTPNSSDINVHVSYIANDQKILIKAYDVHNNSKTELAIPRGIMTSIIGKSKAVVDTS EVQAAIDAIKQYLESNGYTMITKDPVIPQNYDSDDKVDQIIELDFDHKTDVVDHDHIPDG SPIKKADLETTVKRTVTVHNTDGSTQTVSQDFIATRTANYDPVTKTVISYNPWSGSSDTY TISPQKGYKSRWTTRFGEGATIAAKSGDSDYQVVPAYDVDAQHITADTVPGENVDVYYDA QDATRTIKYQDKDTGKIVGSFDSDPAKVGTQVDVDIKGHVPDGYELTPNIEVPSQVAITS DNVPVVVSVQRKGTTYTYTDKNLPTGITADDLQKTVHRQIIEHLTSAGQEHDKYINQDAN FVRTVTVYPATADQPQKVVFGDWTPKTDADSIFSEKAIDQVDGYISVYVDSDGVTGHPIT VVPSQVVAKSNGVPIDADTFHVYYRKVSTVPEGNIPDGTTKKDGTKLTDADLGTDIIRDI YETAPGTTEPKLIKEQRVRLTRDALVNQFTHEVIGYSDWRVNSEYNKAHTADGYDDTLPD YTPTAYAGYTPSVAQVTPIIQIDNNTPHLIKVYISYNNQKRTQVINYVDSATGKTVRSQT ITGVSGQDSSENLEIPAGYEQDTAKPAENVTFSQDGQSIVAHFQDKDLPTGTIYVKASQD TYTQDNVPANLRDQVVKEVTRTITVNRPGDKTPQVIKQTVIFHRTIKFDKVTGQVIPDTA TAWLTDDNNASGTWEEYDAPTITGYVPTTATVASQTVTAETPNSDITINYTDNTQNLKLK AVDDANNESEITIPSGLTTEIKGTSSTPVDQDKLQGAIDKIVKALEDQGYKFAGNNTIDT YDDDSKTDQWITIHFTHQTEDDDQGQLPEGVTPEDLTKTITRTIHVQGEPTKSSHDETQT ITATRKAIYDKVAKKITGYTDWTGSIPVFNVNQYTGYTSQVDGKDAKEVASVTIDNNTPS TLESTVTYKAGEATQTINYVTEDGTKVGTTSMSGNVGTVLGSGVVDKINGNVPSGYELVP GQNFTSYENNKFTTDDNPINVYVKVTGNTISHDGTKPDGVTDDQWNGRNKTVTRTIKFFN ADGTEDTTKTITQTINLGADVLYDNVNKKFLGYTNWRIISGSWNSEDLTEKTPAGMDATI DGHITTYVPSGAVDVNNPQNQEVDVHFKAKDGLSFTVQYQTDSGVILKSYTIKGKANQQG VALAEGTTTIPDGYSVEAKSQAAYDALKSGNHNFGTSDETVVIYVQSAGTHNVGPDDPSK LPSGVTVSDLKKTVTRTATIHKTDGTTEDLTAQTVDFTRQAIVDDATGAFKGFTAWTPEN GTWADETSQVPDVAGYTTVNKNKLGQVTVTGDMEDQHVDVFYVDSTQKAKIEAYTTDGTQ LTIPSSYTTEISGKSGSGIAGKTINDIISYFKGEGYSFDHQDVDTYDTDSNVEQTVKLYF TKGEKNYDSNTPDSDLPKNVNIPGETSPRDLTHDDLYKTVTRTITTETPDGKSSSFTQTV VATRTATVDQTTKNVTFSSWNYSNDGQFASYDVPQLTGYTSTVNGTAATTVASASAKDGN GNPINGDAVTIKYTGNTTTLNPDDKGDVTIPDGTKKGDGTTGLEKKDLYVTSTRTINVYN TDGSAIDHTETQSVTYKRTATLDANKKVIGYSDWELVGKDKTWAAYTISVPQGYTSDSGS QIAEFTPGPGTQDVTINVKFVPETKQVEITYTYTNPKTEEKTVVDTDHAPITTGKETTIT PQPPTGYDVDPSAQIPKTVTTKDGSTKTDDKGQTSPIDTPINIPVVQHVDTYSEGNVPEG TKKSDGTPITNSDLAADVTRTITINIPGQDAKTIKQGPVHMTRTVSINRATGEVTFGNWS ANGSFDTYSDVPTIDGYTASQTSVATVTPDDPTKNYDVVINYTPNTANITYSAVDRENGT DSPLDVSDLDVTVDNSKGRSEADIKKDTDSVISAIKGKFLAQGYKYVTIEGTKLVFTKDT ESKSTIPSGTTDTTGKEVTDKDLTQSFTRTINVKGVDGNVTTYKQTVTGHRQAIIDKTSG KVTGYTDWVYDNNDTYDQFGISQVKGYTSYVGTNSDYSDGSQKTFVEEVTNVNSDATVYV HYEKDQNDANAQIIFKDVDSGNQVGTTQEVTGPSGESKEFDLTAPAGYDFVDSSDAKKNI TFSSDGKTIIVPVYVKHHTDTIGPKDTPDEATKKLITQSLTGNATRTITVHKVDGTTTTE TQTVAMHRSAIIDRAAGTVTYTAWEADDPQNASFAEYAPDKVAGYTTLVDGAPKDTVASE TPTSPVNETVNVTYKASQKSAEIRYVDSKTQQVIKTDVVTGIPGQKVTNISTSVPTGYVL DDGQNVPTEIDIAAGDQATDPTIVYVHQETQTLTDEDAKKQGVLDSDLHRTVTRTVIINE PGKDSKTYTQVAHFNRQAILNKATGAITYTAWTSEDSHFDAISIPTVAGYKSTVAADDAS VAAKDVTAEDRDSFVVVNYIAGDQDLTIRLHDVTDSSKSVDIAIPAGVTSVFHGKSGAPI YSADLRTAISKIKDELAKQGYQYVGEDMPIDYDTDSSVMQYLDMNFKRISDTIGPNDPVP SDIKKDDGSNLSHDDLTKTVTRTIYATDPQGNTTHFTQTVVVTRTATIDMNTKKVTGFSA WSSASFDEYSVPQYKDYTAHVDVDSDESGNVAGRAVTSAEIAAGHAADVHITYTSNTQDA TPTKIPEGATKSDGTPLTKDDLEKTVTRTIHFVDENGNKVADDSVQSVTFSRTANLDKNG KVISYSDWTQSGNWDDVTSPEKAGFKATVATIPAVALTPETAHDVDITVTYKPDRVIGHI KFVDDKTGALVSDKIVDAKAGQTGVATNASVPEGYEIAADSEVKSVPENMDFGATDHADV IIKVSQKVDDIDPDHIPDGAKKSDGTPLTKDDLEKTITRHIHFEYPASYKGTKDTDFDQT VTIKRTAQYNQATKTVIFGDWNTATLENYKPADREGLVTPGEVPALTVDENSQNTTVTLT YTTKTASMNFKAHDDTTGKDINLPSTLQTSISHAGDTTVTQTEIDNVVNGIKAAVGDKYN FINTTTDEDGTVIVHFTHKTSPVTATDTDEATTKEITRTIHVTTPDGKTYDYKQTVTATR TLTRDLVTGKVTPGDWTLPSFDQYGAPQYDGYKSQIDVDGNDDQTAVLGRQVTADELNQG NSHDVNITYTANDHSFKVHFIDAKTGNEVLSPVTYSGKTGESVTIDQSKWNLGNYKLVAG QNIPANVKMSADPSDLYVTVDHGTTTYTSDNPGSYNLTKTITRTIKVVDPVSGAVSVAKT DTVTFTRTATVDSVDGSVSYSDWTASGDTTWADFTAPAKAGYTASPATITGKTVKASDND ETDIITYTANSHDVVVKYVDPTGKEVGTKTISGKSGQTIPVDAQSGVPSGYELDPNNPAP ATYTVGDGEGQTIEVKVITGSHIYHDGDSDVPSDLQLAKTVTRTINIVDPKTGSISTQKQ SITFTRTATVNAATGKVTYSDWTASVSSASGSDVTVGPDGVKFAAATAPTHTGYKTNVDG SLAEEAITAASSDSVVNVTYTPEDQSVVIKAVDDDNSETDITSLIQPAIDAITGKTDAPI DPAKINQAIQAAKDRLADKYVYVTSDPITQFGESGTGTLVLHFKHKSENFDRNNPGTGTS DDFVKTVTRTIHVIDTTGASHDYVQHATVSRTASKDLATGKVTYSDWSAAKFDEYDIPQV AGYKSYAGPSQADQTQADKVASADVTVLNDIPQNGSDVYVTYKGNEDTTQAIQYVDIATG KVVKADNVTGSVGQSVSYTGSLPKGYELANDSSIPTSVTISSDNTPVKVYVRQISYTDAN KPSDLTDALSKTITRTIKFTGITHDDVVQSVTFTRTATWNASENKYDFSSWTATDGNKWA FFNAPQVAGYTGTADHLDQVTVDPDTTQDVTETINYTPNAQTARVIIKDSDNHDAVISVD TVTGVTGGTTEISPVAPKGYELDTARTAKWPSSVQFTSDGTPTADTVIYVKHKTSSSQGD WPLSDDAYKQATSMTITRTITISKPGQADQVITQPVTLTRTITFDAVTGAIKSTGAWTTG TWNLVGYAQAPATVDYNGVTYNRVVTSTSSNPAEQGEGGLQKKTVTSDSKSYDVHVTYVA NTTSLNFKAVDDDASGKDITPSGIITSISHQAGQAVDSSQVQTIEQAIINKVQGLGYTFV PETDTSNPNEYVLHFKHTKLTLTDQGSAPKGITVDPLNKVIYRTISYKFGEGNIAGLDYS TNESYILKRTATIDLATKKVIYTPWQLVNPDGTTSTTLSMPFEAIPTAPTGYVFDKIDGH DGTDGQAPWTAIPSMNIDSSLIDSPNPTKISLTVRYKAAIKTVPVYIYDVDSATPSVAIG KTETVTVDGKQVTQPVAKTEVTAGVRYSNTYDRNFLNDNVKDGANYEYITGESYPVDFTM GPDGVPKAIKIYVRHKHATQQVTTTSTRTIHIQGQDTPQTQTVTFTRDEYIDLVTNKVTG YSDWQAQDSSQASWGAVNVGRSTDGYTAYIDGVKGNVVAEETPLPNQNVDVNVTYEANPA TVNIVYRRNDNNQVVATVPVAGKVDQTVDLTYTAPAGYKLTDGQQLPPNIKLKAQNLDIT VYVDDDPQTYNPSNVPSDVPESIKAQMTKTVTRHIEIIYPEGYTGDKLATPIDQSVTFER DVTVDLTKSGADRYSFGNWHVKGDTATSGSWASVELTKINGYHTDQGIDAATVDANTDNV NLTIHYLANDAQLGIKAVDDTDNSDITSKISQAIANITGKANGAVDAAKIKAAVASAKEQ LEKLGYKYVDTDVVTKFDDVDDTAKPSQDLVIHFTHATSTYNRGDQDLPKSVDTSQLSKS VTRKIIVHTPDGQTSTITQTTSFGRTVTVDNVTGTVTYGKWTPTDGEFDQYDIPQLEGYS TTVQYSGQEAAEAESVASASAVDSQGNPVDGNQVDVYYNAKDGSQVIKYQDPSGADKGSQ TLTGKTGDVVKVDQTKVPAGYEVVPGTPNPGTVTIPGKPSDPIIIKVQPKIDVITLDNTK KPDAVKDSDLTKDVTRVINVYKPGATTPETTTQKVVFTRTANYNEATGKVDSYSAWVPVS GNKFSEFNAPTVTGCTPDKNAPEVEVTADQTYPDVDIHYTAVKNLTAHIIYVDDNNNQTP VKVDSVTGLSAGDTHEYTATAPAGYDLAKGQAATVTITVPTDGTAPSDTIIHLTQHSDQI KGGSDDTSDKTYDLKRTVTRHVYVKTPDGQTKFVKDQVATFTRDVTVNRATGKLTYTDWT SSDKNFEAVSSDDIDGYTQNPVSSITVDENYGEQTAYITYSPKASSIRYQAVDDDASGKD ITPSGINLTVNTAKGIDQTTIDQDKASVEAAIKGALGNKYKFDGQTTDGNVITLHFKHAT TTYGSDSTKPSVVKGALEADVTRPITIVSPDGTKQTIVQTVHLTRTATVDEETGTVTYGN WTSGQFKAYPVSDVEGYTTEVKYGDSAEATRVDGDVKASDITITGQDADAKPENGEPVIV TYKLNDASGKISYQTSDGTEVGSQAISGKAGETDTYKTNVPAGYELTDPNDTAVTVHYPT DGSEKTVVVTVQAKNDTYDNTGDKPSWVKDATTKDVTRTIHFAYPENYTGEKHEDVVQTV HFTRTAIKNEATGDVTYGDWTVQGSDQFDTFNAPDIHGYHPTSSAALVTGVKANGTYDDV TITYAPDNLVGRVIYKYTDKNGNVSVVGIQNVNGTTDGTYQVTEGNVELPKGYTLVKDQT LPSLTFKPGEPNEVTVKVDHATEHFNPGDDIDSHSGDMPKGVDLGTIKQGMTKTVTRTVY VTPVGGERHQVDQQTAHFKRGFKIDLATGEVTYDPWTSDDSTFSDVSSKIPAAPAGYSIV STHTYGSETVTADDNDIDVEVTYAAAKSHITIVAKDKSNNNETIAIPDSVSTTLEGQTAA SVDPKNVQTYVDAISRALEKEGYQFDSTDTFPTAFNGDTTLNIYFTHRTDDKTTDLPDGS EAVSKDVTRTIHVVEPDGQTYDIVQKVTATRQAKVDAVSHKVIGYTDWTTPELTSVTAPQ YAGYTPSVASVESHTPTADEINAGQTADVTIKYTGVQTSQSYEYVDADSGSQIGQTYQGA NGRVGDKVNFDGDIKTNIPNGYELVPNTTLPGEHELGQTNQTIKVYVRKTVVDNTQKTTP KGSDKSTLKELAKTITRTVIAHVPGKAAQTIASQEVHFTRTATWNDAIKSWDYSDWKVDG SQTWDAINDSDIPELAGYSHDPVHVDSYNVLPTTQDQTVDINYTALDQTTHVIYKYGDLT INTKELTGKTGDTVATNINDGIPENYQLVDGQNLPENITFDADGHADIVVNLKHGEDHYD GKTGEKPAWATEDTTRTVTRTINITYPKGKKPAGAEDTQTDSATFTRTATRDKVTGQVTY GEWTLASGNAKFDKFTAPAVANYTPSTSEIAVETVTADSPDTTYNITYTATGTDFTIHAH DITDPKKVIAIDIPAGINPVIRHKTDGSDEAQFELNKEGIIARIKLALAAKGYSFVGEDG TNDGVNLNFKHQEKTYHSGDDIPDGDKGLIKEALSKDVTRKIITSKPDGSSNTVTQTVTA TRTVTIDEATKDVTYGEWNLPSFDGSGVEQIKGYTSLVDGHASTYVSDATVTLGQDKTPQ NGKDVNVSYEANDHTMHIIYRDVDDGYRVVGNPITVSGKTHTTVDVSKQATVPAGYELVD GQTNPANVTFPADGSEVQDITVLVKHHVESVDPNKPTNIPEKGDRDAIIKAGNKDVVRTI HYQKADGTKVFDDTVQTVHFTRTVDVDAITGKIVGYGNWTKADPQPVGDSDHWPSVTAQT LAGYTPSQDSVQDQSVDAATNDKEITVGYTADTHMAHIIYQDADNNNKTIYSQNVYGQTD QTYTISQDTNNKDPRVIVTSVPTGYKLDGQSIPSSISFDAKGADDIVIVLKHDTVDANNP GDVDTHKGDLPKGTDLDAIKQGMAKDVTRTIYETEPGESRKLLTTQRVHFTRTASIDRVT GQVTYGAWTADGADKWAAYPVDNVKGYQQVVTGGTLAETTVTGDMSDQDVEVTYTSQAAQ DITVVARDVTDSSNPVNLGQTQTLKGNVDSPVSGKDLSDAIEAIRKALVAKGYNYQGVEG EIPVKFDNSKHTIVLDFTRANDDVPGGTTIPDKYKGIIADSDVTKTYTRTINLHHNVNGQ DVVEHVTQQVTLTRTAHVDLAKFNADPTDKSAVTYGAWSTADYPEYNIPDKAGYTPFVND NETHSLAASPATGDTNVDVYYKGKQGTQIFKYIDAVSDSQVGTDVQFTGNVGDSEQTYTY VIPAGYKLAKGQGTSSTYSFTDGTNTTNIYLDHDVQTVTPTTIPEGSTDVTKSDLTKTVT RTISYKYEDGSEAHKPDVQTITLTRTAYVDPITHSVTYSNWTSDKSFTDVTAPTIAGYDA SSTIVKGHSVAGNSDDENITVIYTKKTQTTEIQYVDDTGKVIKTVPVSGQTGDKEKTVNT GDNIPEGWKLDENAPKTIVVSFDPNHPQTQTVKIVHDTKTYKSGDENAPEGLDKTVTRTI NFHKPAGNEQVVQTVHYTRTATVDLVSGNITYNAWTIADVSGATKGEGTNASFDAISDIP QVDGYKADHTQVDQLAVTPDTADSVVDVYYNANKTELHFKAVDEDDNNKDIDLLGSLTSP INVDVTTKDVDSQVASREADIKQYLADKYNFDTVDTSVDGNVTTYILKFHHAKDTISEGG NLPEGVSQSDFTRAVHRLIKVYKPGQTDPEVVDQTATAHRQLVVDKANGTYKWTP >gi|297148814|gb|ACGQ02000002.1| GENE 209 260339 - 267601 9495 2420 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0942 NR:ns ## KEGG: LGAS_0942 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 218 2020 1042 2696 2833 324 25.0 3e-86 MTIHFSHKHGDVVENQPITRTINLHQPDGTTVKTEVQTGTATRTNTKDLVTDTVLTYGKW SGGLTQYQIPQIENYVSQVDNNGTRVDQSSIDGTSFSDQDSVPSYNAIDVYYRTVPAYTV VNYKDADGNIIKTENVGGNVGDKKTITADEVPDGYELVPGQDTSKEVTLTNDNPGQPKTP IVFNIQQKVVKVTHDAPKNAGDIIEKNFTYPQGVSEEDLNRTATRTINVIDPKTGKTTTS SQTVKFYRDATVNEVTGKVVYTDWQIASDSPQKSWSAWTIPATPGTEGYIPTISSLPAET PTAETGDKEYTITYTNQAYTTHVTFKDADGTVLRVQTITGVTGTTASVDQKLPAGYKLKD GESIPTSITFDGDPVADKEITLEHIVETLTDKTPDFPNGYTSADFKRTVTRTINVYSTDG QNITKTVTQTATFTRTATYDKATNQITFGNWSVSDGNANFAEYNADQIDGYTPTTKASAV TVTEADGNSTVNIHYTPNDSKVIFEAYDQASGKDVQIDLDSIATNTDLAGKVDQAVNAQD ASDREGKIKNLLIKLGYQYVENSATPTPSKFTADTQTIKLYFTHQTSETPEEKTVTRKIN IPGENGKIIEVTQTATVHRTNTTDKVTGATTPGEWSKAEFPEYDASQVDGKTTYVDGKET TTVPSEAVKIVNGVPQNGDDVTVTYEANPGTQTIKYVDEKGNPIKFSDGSEDQVISGKVG EIKEVNTTIPDGYELVPGETIPGAIDIKKTDSPIIVTLKAKTVTVTPDNPQNEGSEIPDN PGKTFPKGVSESDLNRTVTRKIIEDKPTGSVTVSDESVKFTRTATVNVATGAVTYSEWTV VPNTNNKFSEYVLGDNDQVWGYTASRSKVDESTPSVEAGDQEIHITYAKDTHTVTIDYVD SDNGNAIVHQTIVTGKTGDTKTVTPEIPDGYELAKDSSVPGSVDFSKPTSDQTVKLVHKI TTLTDETPNLPNGLTSADLKHTVTRTINVYSTDGQTITKTVSQTATFKRTATYDEVSKKI TLGDWTLTDGDSNFAEYNADPITGYTPTTKADAITVNRDSGDSTVNIYYTPDDSKVVFEA YDQASGKDVQIDLDSIATNTDLAGKVDEAVSATDASDREGKIKNLLTKLGYQYVANSTTP TPDKYTTAVQTIKLYFTHQTSETPEDKTVTRVITIPRADGSTAKVTQTVTVHRTNTTDKV TGKTTPGEWSKAEFPGYDAGSIPGHTTKVDGQPATSVPSEAVKIVDGEPQNGDDVTVTYD ANPGTQTIKYVDENGNPVGSDQVLKGNVGDKETVNQKIEDGYELTPGETIPSSVEIKDTD TPIIITLRSKKVTVTPDNPKNPGDPITEVPGKTYPKGVSESDLNRTVTRKIIEDKPDGSV TVSDESVKFTRTATINVATGAVTYSEWTVIPNTNNKFSEYVLGDSDQVTGYTASRTKVDE STPSVEAGDQEIHITYTKTNQTATINYVDTENGDAIIHQNVITGRYGDKKEVPSEIPDGY EIAKDSSEPKEIDFSKPTGDITVKLVHKTTTYTGDEPDLPEGVVKTDLQKTVTRVVTVYE PDGKTVQSTKTDQATFKRTLTVDQVTGGFTWSPWTTSDKTTFDAVQGTEKTGYVAQSTPS VTVNENSSDMDINLYYLPLTQQVTVETFDNQTGKEVELPIPAGFGKAITGNTNHEVPAQK LNDYIAALKEFFGDKGYQFVSQSTDPTNFGTKDQVIKLIFNHPGIDVSNTDPDAKKLVTR TITIKYPGGKTQEITQTAVATRTATKDPVTKEVTYGDWTGGFKEFTAPVLPNYVSQVDGK DAESVPSVTFDKNHEPSDASATIDYHTKPSIQTIKYINDKGEVVKTQVIDGNIGDTHKVT GEIPTGYEVAKGFTIPGEVTIQPNDNPILIPIISKTVEVSHTDPKNPGDEIPNNPGKTFP DGVKKIDLNRDVTRKIIEHKPSGDVTVQDQTVHFVRDAKVNVDTGEITYTEWKVDGDRSK FDEYTLGLNDQVPGYIASRIKIDASTPSENAGDQVIDVDYRPIQTIKFRAIDKDGNDAEI PLKNASLATLISGEGGDKVDDKQVYSYVQAIRSELEPRGYEFINYDNIPELIKEIKDGII NVYFKHQIIPVKPGEGKTPEEPVRPGDPESPKYPEGVENKDLTTPITRIINVKYPAGYSE GGSNAEHTETQTQVVQYKRTAQVDKVTGKLLGYTDGEAIGTDTWSEYVPDVAKGYGLTKE SEQAPEVHVKENDKDVVVNMEIVPLPQKLIVKAYDAGKKVVVEVPFDGVTYQTIDSETVK KTVDDALKDKGYIADWTGVEIPTRYDNDVDVDQIVELHTNLIPSPTPEQPTQPEKSNDNA GKTPESPAKSTGKQDEPKATTPLTPEANIHKDVAKKITSSSSKLPQTGNESSSTVGLGLA AMAVASLIGLAGKKRKKDDK >gi|297148814|gb|ACGQ02000002.1| GENE 210 268025 - 268939 981 304 aa, chain + ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 2 289 26 304 304 164 33.0 2e-40 MIYKNLRDTANKMYTPVAKNTTSNKNRSLDSVLAAKKPINILLLGTDTGAMGRDWRGRTD TIMMLAINPNSNKTTIVSIPRDSNAIFPDYPEYGVTKINSAYTLGGVSETIKTLDKYYSV PIDGYIMINMGGLEKAIDQVGGVTVTSPLTFDNQGYSFEKGKTYHMKGKKALAFVQLRHG DPMQDYGRQVRNRLVVMALLKKSISPSTLVNTGFLKSISDEMQTDLTMNQMYKIGMDYRH ATDNLTQDHAQGTSKMTNNPKFGQMEIEVISQEERQRVSDEIRSTLDLAKVQVKENKASY IMNN >gi|297148814|gb|ACGQ02000002.1| GENE 211 268954 - 269826 1036 290 aa, chain + ## HITS:1 COG:SA2457 KEGG:ns NR:ns ## COG: SA2457 COG3944 # Protein_GI_number: 15928250 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Staphylococcus aureus N315 # 11 265 6 220 220 96 26.0 4e-20 MEQIHENNTIDLAQLLKLLRRHIGSLLIWSLGFAIIAWGVSSFMIQPKYSASTQLLVNQK TDEKNIGAAYTLQQANMQVITTYKDIVTSPKILKAASKQLANPVKVVKEAVPAKYETLAD GTKKLVKKAQPAVLERSGKSYTISATELSKAISVSTQQQSQVFSIKATSDTPEKAQAEAN AVAQTFKTEIPEIMSVNNVTVIADANNGTQTFPNVRLFTIAGFVLGFVICLFVIILKEML NTTVRDDEFMTKTLGLTNLGQIDHYHLSNSFKITRVTKSPSSSRIRSRRV >gi|297148814|gb|ACGQ02000002.1| GENE 212 269832 - 270608 984 258 aa, chain + ## HITS:1 COG:BH3668 KEGG:ns NR:ns ## COG: BH3668 COG0489 # Protein_GI_number: 15616230 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 19 237 16 231 235 192 45.0 6e-49 MALFRKKRGTDETMHYGAKLITVAKPQSQTTEQFRTVRTNINFKAIDHDINTLAFTSAAI SEGKSTVAANVAITYAQSGKKTLLIDGDLRRPTVHSTFSLTNRRGLTSILTSDSNELNLD EFTQDSGIENLSILTAGPIPPNPAELVGSKRMKTFIDLVRNYYEMVIIDLAPILEVSDTQ ELARKLDGVVLVVRQGKTQKQAVKRAVEMLEIAQAHVLGYIMNDVKSEDAGYGYGYGYGY GYGEPEKEKKSIFSWMNK >gi|297148814|gb|ACGQ02000002.1| GENE 213 270611 - 271381 671 256 aa, chain + ## HITS:1 COG:BH3667 KEGG:ns NR:ns ## COG: BH3667 COG4464 # Protein_GI_number: 15616229 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus halodurans # 3 256 1 255 255 195 38.0 7e-50 MVLVDIHCHILPGIDDGAKDWMTSMKLAREAVQNGVTHAVVTPHTLNGKYLNHKKDVIRL TENFQEMLDEAHLPLTVFPGMEVRINSKLLEAIANDDILFCDEEGKYMLLEFPSNDVPSY SSGMVYELLREGITPVIVHPERNTKIMQKPELLQGFIEQGCLVQITASSYTGIFGSKVEK FTRQLIKAGQGCTFASDAHDLPNRQYQLSEAYDKLEREFDKNLANSWKENAKNIINGEPV EMHWRPLKQGRFLGLF >gi|297148814|gb|ACGQ02000002.1| GENE 214 271415 - 272059 798 214 aa, chain + ## HITS:1 COG:CAC3073 KEGG:ns NR:ns ## COG: CAC3073 COG2148 # Protein_GI_number: 15896324 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 4 207 12 215 222 204 48.0 7e-53 MIHVRLDKEKIRERYLYYFSKRTFDVIASAIALVLLSPLFLYLIYRIRKEDGGKAIYSQT RVGKDGQTFRMYKFRSMVVNADQMLDQLKDQNEVNGAMFKIKNDPRVTKIGHTIRKYSLD ELPQLWNVLLGDMSLVGPRPPLPSEVAEYTDYDKQRLLVVPGCTGLWQATKRNNADFDEM VELDLEYIKKSGFFYDMYIIFKTIMVMIHPNGAY >gi|297148814|gb|ACGQ02000002.1| GENE 215 272451 - 273266 490 271 aa, chain + ## HITS:1 COG:no KEGG:LSL_1525 NR:ns ## KEGG: LSL_1525 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 23 258 156 386 392 98 34.0 2e-19 MVYCAVKGAILNLPFISNNHSYFAYGYMYTTDFAAQIFYIILGYSVLRRFKFNLFEYLLL LYLSYFVYLKLGAKLDTVLILLIILISLFFKKLILYNFNTIERKTIPLFALCLVFLFFIL GYFYNGSDIYVSLDRFFTNRISQINLGFSRYSFTLLGQSLNMIGNGGLYGYSHSFLKFDY FYIDNSFVYIALEYGVISFIIIIFAIIFALKKFGDEKKNLLVIYLLFAIISSIIDQNFLV INCNLLFLALFAKTDDFLNLNNLKNKELKRV >gi|297148814|gb|ACGQ02000002.1| GENE 216 273365 - 274147 768 260 aa, chain + ## HITS:1 COG:SPy0933 KEGG:ns NR:ns ## COG: SPy0933 COG1209 # Protein_GI_number: 15674953 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Streptococcus pyogenes M1 GAS # 1 256 33 288 289 374 69.0 1e-104 MIYYPLSTLMLAGIRDILIISTPEFLHFFEHLLGDGSHLGINLSYKEQKEPNGLAEAFII GADFIGKDSVCLALGDNIYYGSGLSALLQDATKKDEGAIVFGYHVNDPQRFGVVEFDENM HALSIEEKPQNPKSNYAVTGLYFYDNNVVDIAANLKPSDRGELEVTDINKEYLNRGKLDV KVMGRGYAWLDTGTHDSMLEASSFIATIQKRQNLKVACIEEIAYRMGWISKQKLVELAQN LKKNDYGQYLLRLVKEKNHE >gi|297148814|gb|ACGQ02000002.1| GENE 217 274170 - 275402 887 410 aa, chain + ## HITS:1 COG:SPy0786 KEGG:ns NR:ns ## COG: SPy0786 COG0438 # Protein_GI_number: 15674830 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 4 402 2 382 384 355 46.0 1e-97 MNFQHVFIIGAKGIGNYGGYETFLQKLIEYHQNNKKIKYHIACKANGQGFMDEHKLPGAV TVDDRHFTYYNADCFKIDIPEKLGPAQAIYYDLAALKECIKQCKKQNINNPIVYILACRI GPFMGKYVQKIHELGGKVFVNPDGHEWKRAKRSKPVRWYWKTSEALMVKKADLLVCDSVN IEKYIKHEYSKYTPKTTYIAYGSDVFPSELADDSDIFVNWLSDKGLKSFNYYLIVGRFVP ENNFETMIREFMKSNSKKDLAIITTRDDAFLSELNQKLNFKQDSRIKFVGTVYNAELLKK IRENAYGYLHGHSVGGTNPSLLEALGSTKLNLLLNIGFNEEVGKSAALYWSKEAGNLANL INRVDNFSKTEIDQFGEKAKQRIKDAYSWQYIADCYDKLFYNVDKIKEVQ >gi|297148814|gb|ACGQ02000002.1| GENE 218 275403 - 275984 744 193 aa, chain + ## HITS:1 COG:PAB0787 KEGG:ns NR:ns ## COG: PAB0787 COG1898 # Protein_GI_number: 14521384 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Pyrococcus abyssi # 7 188 6 185 185 187 53.0 1e-47 MGKLIVKGTNLQDVKIITPAVFGDHRGFFTETYSDRDFKAAGINFNFIQDNQSLSTQAGV LRGLHFQRGKAAQTKLIRVATGAVLDVIVDLRKGSPTYKQWEGYILSESNHRQLLVPRGF AHGFVTLTDNVNFLYKCDNYYNAEADGGISFKTPELNIDWPIDLDKAITSEKDANQPTLT EFEKDNPFVYGEI >gi|297148814|gb|ACGQ02000002.1| GENE 219 275996 - 277027 1024 343 aa, chain + ## HITS:1 COG:SPy0936 KEGG:ns NR:ns ## COG: SPy0936 COG1088 # Protein_GI_number: 15674955 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Streptococcus pyogenes M1 GAS # 1 340 1 340 346 568 77.0 1e-162 MFKNIIVTGGAGFIGSNFVHYVVKNHPDVFVTVLDKLTYAGNKENLAGLPSDRVKLVVGD ICDKELVDELVQKADAVVHYAAESHNDNSLLNPEPFIQTNIVGTSVLISACAKYDVRFHH ISTDEVYGDLPLRDDLPGHGEGPGEKFTPDMRYNPSSPYSSSKASSDLLVRAWVRSFGLR ATISNCSNNYGPYQHIEKFIPRQITNILSGIRPKLYGTGKNVRDWIHTNDHSSAVWKILT EGKIGETYLIGADGEKNNKEVLELILKLMGQPSDAYDQVRDRPGHDLRYAIDSSKLRNEL GWEPRYTNFEEGLQSTIDWYTNHRDWWEAQKTAVEAKYAKNGQ >gi|297148814|gb|ACGQ02000002.1| GENE 220 277085 - 277924 898 279 aa, chain + ## HITS:1 COG:SPy0784 KEGG:ns NR:ns ## COG: SPy0784 COG1091 # Protein_GI_number: 15674829 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Streptococcus pyogenes M1 GAS # 3 274 2 277 284 322 60.0 3e-88 MRILITGANGQLGQELQHLLRSRGIDDFDAADRTKLDITDESKVEEYFADNKPKIVYHCA AYTAVDAAEGEGKLLNEKVNALGSEIIAKACEKYNSTLVYISTDYVFDGSKESGEYMPSD PTGPRNEYGRAKLLGEKAVKKYCSKYFIVRTAWVYGEYGHNFVYTMLNLAKTHKQLTVVS DQIGRPTWTKTLADFITYLVDNKVAYGTYQCSNDGICSWYDFAKEILKDKDVEVLPVSSE EYPTVAYRPHYSVMHLAKETGFEFPMWKDALHEFLLSID >gi|297148814|gb|ACGQ02000002.1| GENE 221 278195 - 279373 443 392 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 376 46.0 1e-104 MNDFTKNIAQALLNQDKINDLLRKELQQAVNDLLEAELTAFLGYDPYARAGWNTGNSRNG AYFRKVDTQFGEIKIQVPRDRNGMFHQHTLPDYKQHSNVLESMIIKLYSKGVTTREIADL IEKMYGSHYSPAQVSNISKQMIPKVEAYHQRKFSDKFFCVYLDATYIPLRRITFDREAVY IAIGIKPNGHKEVIDYRIAPSENVENWTEMLQDMKSRGLEQVELFLSDGVVGMKTVLEQT YPKAHFQRCLVHVMRNICAKVRVDDRETIMNEFKQIHQQPNKEAAIKVLHAFYDKWNRAY NHVIRNLKEIEPDLLVFYSYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLNTF IGIQAMSYNERYFNRIHKGFGQVQDTLESYFD >gi|297148814|gb|ACGQ02000002.1| GENE 222 279412 - 279981 331 189 aa, chain - ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 5 182 8 186 476 93 32.0 2e-19 MKVVKNYLYNVGYQVLAIIVPLITSAYVSRVLRPEGVGANAFTNSIIQYFVLLASMGIGY YGNRQIAYVRENKYKKSQTFWEIQIVKTIMTLIAWIAFCVFMLFYTRQPQYMWAQSLNLI AVAFDISWFYEGIENFKVTVLKNSFVKILSMIAIFLLIKGPNDVTLYIIVLAVSTLVGNL TLETVKFFV >gi|297148814|gb|ACGQ02000002.1| GENE 223 279988 - 281142 1055 384 aa, chain - ## HITS:1 COG:MT3116 KEGG:ns NR:ns ## COG: MT3116 COG0438 # Protein_GI_number: 15842595 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 163 322 191 337 414 61 29.0 3e-09 MKKIKVGYISPVNPKKDRMAWSGTYYNTFHAIRDAGAEVEWVSYNTQSIIYKLATKCASF LYKIAKGKGSSTHSRVMSKVHSFFVNNQNLDKYDLLFIPGQIDIVAGLKARVPAIYYTDG TFNIMVDYYWFGYSKKAIDEGNKLERKAVKKSKFNFRSSHWAAESTVNDYGANSKQTYIF PFGADVPQDCLLAQIPDYKSRTLKLLFSGKEWDRKGGRIAVAAAEYLNKAGINTELYIVG PTVKPEYIEGKDFVKFIGYLDKNSASEYEKYLSLYHECSAFILPTRAECAGLVFSEANAF GMPIFSSETGGVGDYVINGVNGYRLPLSATGEDFGKKIEEVYKEKAFDQLSNGAQETYKN STSWNAWSKHFKEFIEENFEQNGE >gi|297148814|gb|ACGQ02000002.1| GENE 224 281150 - 282262 1453 370 aa, chain - ## HITS:1 COG:glf KEGG:ns NR:ns ## COG: glf COG0562 # Protein_GI_number: 16129976 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Escherichia coli K12 # 1 366 1 362 367 454 60.0 1e-127 MKNYLIVGAGLFGAVFAREAANRGNKVTIIERRNHIAGNIYTKKVDEIQVHQYGAHIFHT SNKKVWNYVHQFAEFNRYTNCPVANYKGHMYNLPFNMNTFSEMWGVRTPQEAMDKINEQR QEMAGKEPKNLEEQAISLIGRDIYEKLIKGYTEKQWGRKATELPAFIIKRLPVRLTYDNN YFNDDYQGIPIGGYTKMVEKMIDHPNITVELNTDFFDKKEEYLNNFDKVVYTGMIDKFFD YKLGELEYRSLRFETEEKNVGNYQGNAVINYTEAEIPYTRIIEHKHFEFGKGDENKTIIT REYPADWKRGDEPYYPVNNDRNNDLYKQYAELAGKQDKVIFGGRLGQYKYYNMDQVIAAA LEAVKNEFEE >gi|297148814|gb|ACGQ02000002.1| GENE 225 282296 - 283297 807 333 aa, chain - ## HITS:1 COG:MTH348 KEGG:ns NR:ns ## COG: MTH348 COG1216 # Protein_GI_number: 15678376 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Methanothermobacter thermautotrophicus # 18 331 1 310 313 154 33.0 2e-37 MFSYANQIIMGVNRMENVKVDVILVTYNRLECLKKALDALQKQNYPIHKIFVYNNASIDG TDKYLENSGFTTVKSEMELKDVYPNQKLITFLSSENLGGAGGFSASFKYLSQFDSDYIWI MDDDVAPTSNCLEELLKYLKKEKVKAVIPRRVGPGYTDSICTNIDMKNWRKFWTWWRKDT ISNPTEKETYSVVDMAFEGPLFDTNLVRQVGTPDAEFFILYDDTDYSQRILKYTKILYVT NAILNRQLPPKAGDLGNKPYNWRMYYRLRNNIVFDRKYGENWCVKHISPRLLCLQTMLLA VRDHHVKSNVPLIWKAYRDGMKHRMGKRVDPNY >gi|297148814|gb|ACGQ02000002.1| GENE 226 283297 - 284295 571 332 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0571 NR:ns ## KEGG: PEPE_0571 # Name: not_defined # Def: glycosyltransferase # Organism: P.pentosaceus # Pathway: not_defined # 2 331 3 331 332 275 45.0 1e-72 MSNIDFVVTWVDGGDPKWLAKKKLFDKSIQIDESMNASKNYRPGNNFKYWFRAVEKNAPW VHKIYLVTDDQVPEWLNLAHPKIEVIDHKQIFPQDALPTFNSNAIDINLYKIPGLSEQFV YFNDDIYITNSTTSEDFFKNNLPCDIAQLNPIVAVRGGTGNFQVNDMMVINEHFTKKELL KNGKMLSLKNGLKAVIRTGLQLPSKFTCGFFDPHLPLSFLKSTFEEIQNISQDELKATTY SRFRDARNVSVWLMRYWQLATGKFFIRNNEKLGKFYSLADDKQAEVWATFESKLPKVMCI NDSANISNPDATDKKLSEYLDNIFPEKSSYEK >gi|297148814|gb|ACGQ02000002.1| GENE 227 284324 - 285475 868 383 aa, chain - ## HITS:1 COG:alr3699 KEGG:ns NR:ns ## COG: alr3699 COG0438 # Protein_GI_number: 17231191 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Nostoc sp. PCC 7120 # 4 349 3 343 382 115 27.0 1e-25 MKNILYLHAGAEMYGADKILLELVSGLDKERFRPIVVLPTDGPLVSKLKSAGISTFVIKY PILRRKYFNPRGIYNYVSSYQKACKQIIELLDEQRIAIDLIHVNTLAVLEGIMLKKKLNA RLIWHVHEILERPTPIAKLLACLVNKYADKVVAVSQAVKKHLVSFGKVDSSKIAVVYNGV DTNQFSPTINTDSLRKEWNIPSDSINVGVIGRINAWKGQNDFLEALTPLLNEYSNLYLFV VGSAFSGQEWRVKELKEKIKNYNSKRIIYSEFRTDNNAVQSLMDILVLPSTNPDPLPTVV LEAMASGNPVVSYKHGGAVEMIKDGETGLLAKVCDTSDLQSKVKILLENQHYINFGKAAR LRVEKEFSLDAFWSNFENIYTQI >gi|297148814|gb|ACGQ02000002.1| GENE 228 285492 - 285965 310 157 aa, chain - ## HITS:1 COG:alr1276 KEGG:ns NR:ns ## COG: alr1276 COG0110 # Protein_GI_number: 17228771 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Nostoc sp. PCC 7120 # 64 157 172 265 275 102 55.0 2e-22 MKFEDYSEIQALSTNGIHLGDNVTIGRFTSIRPSSYYGVGKIGYGLEMGDNSSIGPLGYV GCAGKIKIGKNVMIGPRVSFFAENHNFNEKGISIKEQGVNNKGITVEDNCWIGSGVIILD GVTIGSGSVIGAGTLVTKDIAKNSVVYDKRDKVIKKR >gi|297148814|gb|ACGQ02000002.1| GENE 229 286105 - 287283 443 392 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 376 46.0 1e-104 MNDFTKNIAQALLNQDKINDLLRKELQQAVNDLLEAELTAFLGYDPYARAGWNTGNSRNG AYFRKVDTQFGEIKIQVPRDRNGMFHQHTLPDYKQHSNVLESMIIKLYSKGVTTREIADL IEKMYGSHYSPAQVSNISKQMIPKVEAYHQRKFSDKFFCVYLDATYIPLRRITFDREAVY IAIGIKPNGHKEVIDYRIAPSENVENWTEMLQDMKSRGLEQVELFLSDGVVGMKTVLEQT YPKAHFQRCLVHVMRNICAKVRVDDRETIMNEFKQIHQQPNKEAAIKVLHAFYDKWNRAY NHVIRNLKEIEPDLLVFYSYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLNTF IGIQAMSYNERYFNRIHKGFGQVQDTLESYFD >gi|297148814|gb|ACGQ02000002.1| GENE 230 287282 - 288298 851 338 aa, chain + ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 40 337 179 474 476 93 23.0 4e-19 MKEFFFLYVFFCSNQSYEKGTPFSNVLRNKFKELFILTQTILQSLTLWPNLKENIIKVNL REMNPWPHFLPMIELFIPQIATQIYVQLNKTMLGAMVAEKASGYYQYSDNLVKLILALVT ATGTVMLPHVANAVSKGDMHIVNKMLYKSFNFVSAISYPMFFGLAAVSTTLATKYYGPGY EPVGPAMMIESIVILMIAWSNVLGVQYLIPLKKVHQFTASVTCGAIVNIILNVPLIHFWG LNGAMWSTVISEIAVTVYQLWVVKDFLNLNKLFHGSGKYLISSFVMFVAVYGMNRNLKDS WLMLGIEIFVGIVIYAICIVLLKAEILLDIKEFINKKR >gi|297148814|gb|ACGQ02000002.1| GENE 231 288491 - 289303 849 270 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 8 269 11 292 293 164 35.0 2e-39 MSYHDDKFYGFTNDEIFGSIMQNKRFCKAIIQAVLPDVNVVSVKNIDAQKELGTKSDKQS KSVRLDIAVKDQAGNLYDLEMQVNNNHDIGPRMRYYQSSMDRDTLDRGEPYTSLSRTYLI FLCAFDPFGKGKLRYSFHLYDDEDKNIQLKNNTENIIINSKGRGTNDVDLLNLQKLMNDD KIEVAGVFKEIQNKIQEYNDDPKRRNLMRTAELRMKEETAVARREEQKNTVRVFKALKPD ATVSEGLTWIRANTNVSLSDEEIKSLLKEK >gi|297148814|gb|ACGQ02000002.1| GENE 232 289324 - 289539 223 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282931950|ref|ZP_06337415.1| ## NR: gi|282931950|ref|ZP_06337415.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 71 208 282 282 90 73.0 3e-17 MRTAELRMKEETAVARREEQKNTVKALTATIKEMRPEVNESDLFRQIKKSVGSKFSLSDA EIMDIIRQNLK >gi|297148814|gb|ACGQ02000002.1| GENE 233 289679 - 290122 494 147 aa, chain - ## HITS:1 COG:L0247 KEGG:ns NR:ns ## COG: L0247 COG0789 # Protein_GI_number: 15673461 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 2 112 4 115 144 94 42.0 7e-20 MYSIGQVAKMFDLPISTLRYYDKEGLFPDMQRKGNQRIFTEAELECLRVIACMKKSGLEI KDIKQYFDWCREGSSTYKLRQELFLKQRSEIEDEIKKLQATKAMLDFKCWYYDQLIDQKV KDEAELQTKIAQKDMPTPVKKAYELSH >gi|297148814|gb|ACGQ02000002.1| GENE 234 290226 - 291260 1397 344 aa, chain + ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 1 342 1 343 348 413 60.0 1e-115 MKAAIFKEKGKMEVVEKAMPELSFEDSAIIRTVRASVCGSDLWFFRGIDQVEAGNVTGHE AIGIVEKVGPAVKNIKPGDFVIAPFVHGCGHCAACLAGFEGECQNNPAPFNNHFQAEYFE YNNANWGLVKIPGKPEDYSDEELASFQTLADVMPTGFHAAKMARVKKGDTVVVLGDGAVG LCAILSAKFLGAKKIISTSRHADREALAREFGATDNVAVRGDEGVKQIRKLTNGAGADAV LECVGSELSMDTAVKVARAGAMIGRVGVPHDEKLDSNQLFFGNLGIQGGPASVTTWDRKY LLDAVLKHEINPGRVFTAQFKLDDIQKAYEVMDQRKAIKSLLVF >gi|297148814|gb|ACGQ02000002.1| GENE 235 291859 - 292059 167 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297205925|ref|ZP_06923320.1| ## NR: gi|297205925|ref|ZP_06923320.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] # 1 66 3 68 68 108 100.0 1e-22 MIPIVALTKSIERRKCFLIEWLTLLVAVSQFALNWYIFYDQKRTQKNNRLSSAKLMVVFI VINTKK >gi|297148814|gb|ACGQ02000002.1| GENE 236 292247 - 293422 1324 391 aa, chain + ## HITS:1 COG:SP1544 KEGG:ns NR:ns ## COG: SP1544 COG0436 # Protein_GI_number: 15901387 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 389 1 390 395 383 48.0 1e-106 MKLSKRIQTVTPSATMALSSRAKELAMQGKDVINLSIGEPDFNTPSFIGQAAIKAISENL TDSYTPAGGLPELKQKIAERINSEHKTKFSSQNIAVTTGAKYALYALAQVLLNPGDEVLI PLPYWVSYGEQVKLAGAKPIFVKPEKGLKVTPADLQKYTHNATKMLIINSPNNPSGQVYT KAELIAIGKWAAERQITIIADDIYGKLIYNQTQFTSLLDLDDDIRQNVILVDGLSKTYAM TGWRVGYIAGDSNLITALNSFLSHSTSNLSAVSQYAALAALTGEQACVENMRQEYEKRLN ILAPLLDGVEGFKLIEKPQGAFYFFPDISEALKLTGYKTANDFALALLEKEGVATVPGEA FGYPEHLRISYAADLDRIKEAINRMKKFVNK >gi|297148814|gb|ACGQ02000002.1| GENE 237 293554 - 293649 91 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKNNLFRRNTAMVLTSLVLSAGVVTACLSKL >gi|297148814|gb|ACGQ02000002.1| GENE 238 293631 - 295229 1638 532 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297205927|ref|ZP_06923322.1| ## NR: gi|297205927|ref|ZP_06923322.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] # 1 532 1 532 532 920 100.0 0 MPKQALAESNESATSTEKQGASLVNNTGVGVYSEEHAGLKHGTAIQTNQNPELQSTSSSI LDLDKSQGKFYALANVENTTDQEQHFVQAIVLPRFYKGSNSDINKVDVVLDANQVSENGL SFGLKNEKVQYAIKPGKYRNLDRLARENPGFTWDQIIGIKIDAYLAPKQNFSGKIPLTVA NYNQMQDQLSALANNSAENSIISNINLRQFSVGQSFYYYTNGEIQTTYDGHLTARVGKEV TKLEKIISQANLKKYQAKTLDFSADGTRIYSSVPANIQSLLPPITAEDFIYYNFGSSYPA SVALYTDGIYAIKIRPIFDAIKNAGYSVNIKPNGHEIWEQYKYSVASDSNWIIDYSGSDV TPEENPFYVQVQQIFDTKDITIHVGENWTNKDNLLKAEVVTYDPATMALTSKHVLTEAEY AVEDNVNTNKAGVYSVKYSYKINDNDIVTKTAKVTVLDKETKAEDSSSSSSSSSESVNSS SGSSSSSYITDKTVSQKSAKRLPETGTTTALAIVTGTIAIICSILLIKKNKK >gi|297148814|gb|ACGQ02000002.1| GENE 239 295636 - 296514 552 292 aa, chain + ## HITS:1 COG:lin2250 KEGG:ns NR:ns ## COG: lin2250 COG0583 # Protein_GI_number: 16801314 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 8 253 2 246 284 89 29.0 6e-18 MGLTSLFDYRLKTLVVLVRTKSFTLTAKELFISQPAVSQQIHSLEKDLGFRLFYRSGKSI ELTAKARELVAYVQRINSDSSRVLAEIQKDDKKRLSIGASLSLSSFLLPNLLAKTINDEK TPKVDIANTKQLLEKIKLGELDFALIEGNFDKSEFDFFKLSDYPMTLVTNPRTYPVAQWS DILKQPLFIGMEGCGTRDIFEKLLAAHNFALSDFKNVIEVDNPVTVIEMLKQGEGVSFLY RQLICDELKRNELLEITAIPEFNVEHSINLVFAKGSSYKERYQQIATLVKHL >gi|297148814|gb|ACGQ02000002.1| GENE 240 296616 - 296795 357 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851028|ref|ZP_05556417.1| ## NR: gi|256851028|ref|ZP_05556417.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 59 1 59 59 63 100.0 6e-09 MSDKLTGKAKEVEGKLTGDKAREAQGKAEGLLGKAKEKINDVKEDVKDKAKEIKEKLDD >gi|297148814|gb|ACGQ02000002.1| GENE 241 297245 - 298699 1343 484 aa, chain + ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 7 484 5 472 472 450 53.0 1e-126 METFEKVKWKQFILPVVIGLLIWFIAPVRPAGISIDAWHMLAIFIATIVACITQPMAIAG VTLIGFTMTVCLGLAPIADVMKDGKVIQKGALSAFSNSSAWLIVMAFMISRGIIKTGLGR RIALYFIKWFGKKSLGLGYAIGAIDLITSPATPSNGARAGGIVYPLINSLANTFDSHPNN DSRKKMGAYLVFTEFQTNVITSSMFMTACAPNLIAVSLASKAGINLNWMGWLAASVVPAV ICLLIVPYLVYKLFPPRVKETPNAKEWANEHLQEMGKMTAPEKVMALIFAVTLILWMLSS SIKLDATVVAFISLTLLLLFGILSPKDILKETGAWNLLIWLSILVFMAGKLTQFGFIAWL SKEIEVSVKGMNWLLVLVILALILFYTHYLFASATAHNTAMYLPLLIVAVSAGAPKVLAA QFLAMFSAIMGSTTHYSSPASSVLSASGYVTQKEWWNLSFIFGLLYILVYGIIGLLWMKL IGMW >gi|297148814|gb|ACGQ02000002.1| GENE 242 298911 - 299471 151 186 aa, chain - ## HITS:1 COG:no KEGG:lhv_1083 NR:ns ## KEGG: lhv_1083 # Name: not_defined # Def: putative transposase # Organism: L.helveticus # Pathway: not_defined # 1 186 100 285 285 368 96.0 1e-101 MNKKVDLNGHFLIIDSFPVPVCQPIRNYRAKIFRGYANIGYKATKKIYFYGFKVHAIVSD DGYILDYVVTKASVHDAKETVELLENAHPSNYYLLGDEGYLGKELHQQLKQMGYELWTPY RKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAY CLERFN >gi|297148814|gb|ACGQ02000002.1| GENE 243 300015 - 300218 182 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|238855598|ref|ZP_04645899.1| ## NR: gi|238855598|ref|ZP_04645899.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] # 1 66 207 272 274 102 86.0 8e-21 MRTAELRMKEETAVAEKRGREAGDKNTVKVFKALKPDATVAEGLAWIRANTDVSLSDEEI KSILREK >gi|297148814|gb|ACGQ02000002.1| GENE 244 300320 - 300466 68 48 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282931950|ref|ZP_06337415.1| ## NR: gi|282931950|ref|ZP_06337415.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] # 1 48 235 282 282 85 97.0 8e-16 MRSLTLTIKEMRPEINELDLFKQIKKTVGSDFSLNDAEIKTIIHQNLK >gi|297148814|gb|ACGQ02000002.1| GENE 245 300552 - 301856 1052 434 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 46 427 19 408 419 159 29.0 8e-39 MKIVKKMSIISAVAASLLAATGCSNNQKSTSSSTTKNSIPTKITKKTTITFWHGMTGPLE NSLTQLTAEFEKENPNIKVKLENQNSYQDLHSKITSTMQSPKNLPTITQAYPGWLYTASK NNMLVDLTPYINNSQIGWGSSEKSQIKSDLLKGAQINGKQYGIPFNKSVEILIYNKQLLA KYGVKVPKNMTELKAAAKKIYEKSNHKVAGAGFDVLSTYYVLGMKAKGHNFNSSIDFTGK DSKSVINYYADGVKNGYFQIAGSQKYFSTPFANQKVAMYIGSSAGEAFVKKGVANKFEYG VAARPSEYNIPQGTDIYMFNHASSMQKSAAFKYIKFLTSKSSQLKWASQTGYIPVNTQAL NSAEYKKSKSVKAPAILSSTTKKLYTIPVSKNSDATFSDLSSIMESILSQAAKGNNVNTA IKAGKVKFDSDWKQ >gi|297148814|gb|ACGQ02000002.1| GENE 246 302283 - 304094 2741 603 aa, chain + ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 603 1 602 602 670 57.0 0 MCGIVGVVGKAARNIILNGLTNLEYRGYDSAGIYLNDLKGHEYLTKAVGRISNLKEKMTP DEDGLVGIGHTRWATHGKPTVDNAHPHFDETKRFYLVHNGVIENYTELKDKYLQGVKFHS DTDTEVIVQLISKIARDKNLDGFTAFKEALKLVRGSYAFLLVDDQKPDHVFIAKNKSPMM LGLGEGFNIIASDAISVLDQTKTFVSLEDGDVGDITKDSYTIETIDGEKVEREPKVLDID PNAASKGTYEHYMLKEIDEQPGVMRHISQTYLDDAGNPKVDSKIVDAVAKADRLYIFAAG TSYHAGLVGKALFEHYTGIPTEVGYASEAGYHFPMMSKNPFFIFLTQSGETADSRVVLKE TNKRGIPSLTMTNVEGSTLSREATYTMLLGAGPEIAVASTKAYTAQVAVQAVLAKALGEK LGVKEAQEWNLHHDLAIAAEGIQQLVDGKEKLKEIADKYLIKSRNAFYIGRGIDHAVALE AALKLKEVSYIQTEGFAAAELKHGTISLIENGTPVIALINDPVTAELTRGNIQEVVSRGA NIVTIVSKEFANSTDDIVLPEINYYMSALLTVIPTQLLAYYASRDKGLDVDKPRNLAKSV TVE >gi|297148814|gb|ACGQ02000002.1| GENE 247 304321 - 304515 320 64 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526303|ref|ZP_03956352.1| 50S ribosomal protein L33 [Lactobacillus jensenii JV-V16] # 1 64 1 64 64 127 98 8e-28 MLICLQEGSRKEKKMRNNIILECRQTSERIYITSKNKRNTPERLRLMKYSPKLQKRAEFV EISK >gi|297148814|gb|ACGQ02000002.1| GENE 248 304531 - 305499 943 322 aa, chain + ## HITS:1 COG:no KEGG:EF0573 NR:ns ## KEGG: EF0573 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 214 1 215 536 178 48.0 2e-43 MKSKLLLASLMVSGAILVGTNQNSIVKADDLSSTTEVNSGVSFTGVFYYTNGLPIESGSY VQLKNQANNKTISKTVNASGAVTFNATDGLKTGTSYEVIVNNQKLNYTLQLSSGNSNISK AFTVNLPGAELPLTYTVNARYTNGLPLREGTEVKLRNLTDGSTEVLTKKVNSQGSVTFTE ADGLKKGVNYSVEIPGLTTGYSIRYDLGGNKSKDFILETTESKTSEQNSASSSSSNLLSS STNSASLSNSNKANSTSSEDLKKQALHVAATASHKATSATKLPTKKQVQNLPQTGTKSGL LLTALGLLSLLASKLLFKRRIY >gi|297148814|gb|ACGQ02000002.1| GENE 249 305606 - 306751 1202 381 aa, chain + ## HITS:1 COG:CAC2834 KEGG:ns NR:ns ## COG: CAC2834 COG1929 # Protein_GI_number: 15896089 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Clostridium acetobutylicum # 3 376 6 376 380 323 48.0 3e-88 MKILIAPDSYKNCMAARQVAVVMKKGLSRIFPNAEYVLVPMADGGEGTVDALVSATNGQF VDVQVHNPLNQLVMAKYGFLGDKKTAVIEMAAASGIQYVDKKTMNPMITTSYGTGEMIQD AVRRGAKQIILGIGGSATVDGGCGMAQALGVKLLDKNGQAIKLGGAGLADLTHIDISQVP EQIKKIKIYIASDVTNPLTGSQGSAVVFGPQKGATEQMISVLDQNLHHLAQVVKNDLQVD YEATPGSGAAGGLGFGLLAFTNSEMKQGIELVTDFAQLAEKAKGADLVITGEGSTDFQTK FGKTPYGVALTTKKVAPQAPVVVLSGNIGPGVENLYENNVIDAIFSTPSGAKSLEQAIKD APEDIALAAEEVGRLIKSIIK >gi|297148814|gb|ACGQ02000002.1| GENE 250 306900 - 307265 616 121 aa, chain + ## HITS:1 COG:FN1138 KEGG:ns NR:ns ## COG: FN1138 COG3576 # Protein_GI_number: 19704473 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase # Organism: Fusobacterium nucleatum # 17 119 24 129 143 57 32.0 8e-09 MKKLESTKLTADQQKFFTDKLAFVSSVSKDGEPQVGPKGSLNVVDESHLAWVEVTHAHLW ENVQAGSKVAVVVADVPSHTNVRVIGTPHVSEDKEFIEAQYKKTGKTSGDVVVIDIEEID A >gi|297148814|gb|ACGQ02000002.1| GENE 251 307759 - 307998 393 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851075|ref|ZP_05556464.1| ## NR: gi|256851075|ref|ZP_05556464.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 79 1 79 79 126 100.0 5e-28 MSKVLKLGFINSENKNTTLSLPNAKDGLDEAVVRQAMKNISDAHAFNKDGVDPYHSARMA KYVETTTTTLFDDTKSNQD >gi|297148814|gb|ACGQ02000002.1| GENE 252 308027 - 308236 279 69 aa, chain - ## HITS:1 COG:no KEGG:lhv_0182 NR:ns ## KEGG: lhv_0182 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 66 1 66 71 69 56.0 3e-11 MNFELLEQSVQYTFSSESYTNGKLTRTLKNVAKDATASALAQVGQALSSLQGDTLSDAIL IQKQNIKLV >gi|297148814|gb|ACGQ02000002.1| GENE 253 308431 - 311649 3968 1072 aa, chain + ## HITS:1 COG:lin0521 KEGG:ns NR:ns ## COG: lin0521 COG0610 # Protein_GI_number: 16799596 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Listeria innocua # 39 922 10 880 995 396 32.0 1e-109 MIYDKEDIFENSLIEYLSTGKVPQYEINEPSQNYVIDTLRKQGRKQIWQYLPNVKTTPAL WQNFKKILEQHNQDKLDGPLSENEFAQVKKEISSLNTPYQAGQFLYGVNGISQIEIDLDD GRHVFLKVFDQKQVGAGDTVYQVVNQIQRPAVIHGKQERRFDTTLLINGLPIIQIEEKKD GISANEALNQMHQYIEEGQYSDIFSTVQILVAMSPHECLYMANTTADKFNKDFAFHWQRK KDNTQVNNWLEFADTVLSIPMAHQMATSYMILDGTPNNQMLKVMRPYQVYATQAVIEKLK HWDFEYGENRVGYVWHTTGSGKTITSFKTAWLASRLPNVDKVVFLVDRIALTRQTMEKYH AYDPEASEDDWGNVLDTRNTTDLKNKLRKRGSDIIVTSVQKLETLVKRDSFKDPDKNIVF IVDEAHRSTGGDAFSLLKKAFKKGAWVGYTGTPMFDDTTANGVRTQDVFGEPLHIYTIRE AISDGNVLRFKVDFQTTIDEDKMKSDFLPEFYHQRYPKWTEADIKHKIENLQPDDIDDAI GPTFYDENKEHVKLVVEDIFKNWRNRSNDGQYNALLTTHVGGNRASTPMAMMYYDEFQRV NAEHQKNGGLVLKVAVTFSQSTGNDDNMVENNKNLSRAVDLYNAQFGTSFGMDDIAGYTA DVVSRLNKTAFDKNYLDLVIVVDQLLTGFDAPGLNTLYVDRILRNASLIQAYSRTNRIAD MQTKPFGRIVNYRWPVENEKLMNRALSIYANKSSAFSQDKLLKDDDNPVTVPSYKEQVNE VRKTIDRLRTLTNDTLEEVPKSEENQKELKQLLQKYSREIEILKQYDHKIDENGEEVGYD YEHPEKLLSQLGISEQEEKKITTVLPNLIKTINPVNPGNPLPDIDLRMTHIKEVVINYDY LTHLIEELINKVHEDDKEAVRKIQDKIREFTLSMDNRAYAKQIERTSRAIVNKQYPKDAE NQKYPYHIEDVHEVISQANETEIDDIIYKFRIKWGIADVVTTEELKSMFANHRLGQKDLN DSGKIDAIKKAAAETYKKRATDEKVVKLSKIKYRNSLADAIYELADELKREI >gi|297148814|gb|ACGQ02000002.1| GENE 254 311668 - 313320 2127 550 aa, chain + ## HITS:1 COG:SA1626 KEGG:ns NR:ns ## COG: SA1626 COG0286 # Protein_GI_number: 15927382 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Staphylococcus aureus N315 # 3 535 11 518 518 469 49.0 1e-132 MSEKDITTKLWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEDYLVKNDILDIEDGES VNDAYVREASGEDLTDYLEDIASSLGYAIEPHDTWASLIKRVQDKEVIPSDYQDLLDHFA KNTELANNKTASQDFRGVFNDVNLGDSRLGSNTNDRAKSISKIVQLVDTIEYKDENGKDI LGTIYEYLIGQFAASAGKKGGEFYTPFEVSKVLAKLVTANLKGEPEEFEVYDPTCGSGSL LLTVQGEVPGGKKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEFTNIHLSNADTLEADWPD GLDAQGVDRPKTNFDAVVANPPYSAHWDNNENKLKDPRFSAYGKLAPKTKADYAFVLHGL YHLSPEGTMAIVLPHGVLFRGAAEGVIRQNIIEKNYLDAVIGLPANLFYGVSIPTIVLVF KKNRQNKDIFFIDASREFEKGKNQNKLTEENIDKIISTYLKREDVDKYAHKAELDEIKEN DYNLNIPRYVDTFEPEPPVDLGKVADELEEVNQKIAENKKELLEMLKELTTDDDDLRAQL DKFISVFEKN >gi|297148814|gb|ACGQ02000002.1| GENE 255 313343 - 314629 541 428 aa, chain + ## HITS:1 COG:SA0392 KEGG:ns NR:ns ## COG: SA0392 COG0732 # Protein_GI_number: 15926110 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 225 402 5 183 403 176 48.0 8e-44 MTDDLMKSSGSRDAGNSTHADEQRLYPKVRFRGFDEPWKKVKLGDVAEIIGGGTPSTSNL EYWDGNINWFTPTEVGKTIYLHESQRKLSELGLKKSSARLLNPGAILFTSRAGIGNTGII INPSATNQGFQSIQPNKNIIDSYFIFCLSSRLKRYALKHSAGSTFTEISGSEMKKAKIRI CAKNEQNKISTCIKSLDSLLSLQQRKLELENQLKQFNLQNLFSDEQRLYPKVRFRGFDEP WKKVKLGRNVKRIRRKNKNLETNIPLTISAQFGLVDQRDFFGRVVASENLANYILLKRGE FAYNKSYSKEAPYGSIKRLEKYNEGALSTLYIAFTPENINSDFLKAFFDTTKWYSHIVQV STEGARNHGLLNISPQDFFEMSITIPKSDEQNNISRIYNLMNSLLSLQQQDINTTQQLKQ FLLQNLFI >gi|297148814|gb|ACGQ02000002.1| GENE 256 314665 - 315588 702 307 aa, chain - ## HITS:1 COG:lin0524 KEGG:ns NR:ns ## COG: lin0524 COG0582 # Protein_GI_number: 16799599 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 2 307 3 308 309 397 61.0 1e-110 MSKKISTKLFYRYYGNWIDLYKKGAIRQVTLDKYYLTERKLRELAPELRLSELNRQTYQK LLNDYAETHEKHTTLDFHHHLKAAIIDALDDGMIKTDPTRRVIIKGRKPKPKKKKYLNLF ELQMLLKQLKLGTEPNWDWFILLVAKTGLRYAEALALTPNDFNYEKQVITVTKTWNYKYA GGGFRPTKNPTSKRNVMIDWQLAQQFKQITQGMDPEKPIFVSGRAFNSTINIILERLCYQ AEIPVISIHGLRHTHASLLLYEGVSVASVAKRLGHANITTTQKTYLHIIQELENKDNDKV MHHLSQL >gi|297148814|gb|ACGQ02000002.1| GENE 257 315632 - 316753 552 373 aa, chain - ## HITS:1 COG:SA0392 KEGG:ns NR:ns ## COG: SA0392 COG0732 # Protein_GI_number: 15926110 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 3 206 28 230 403 71 30.0 3e-12 MEEISERVNGNDNRFNLPVLTISAKTGWMTQEDRFSGDISGKQKKNYTLLHKGELSYNHG NSKVAKYGAVFSLQNYSEALIPHVYHSFKIIKETTPVFIENFFKKKDVNKQLRKYISSSA RMDGLLNISYSDFMKVHLFISQKISETKQIDKIFEILNSLLSLQQRKLELEKQLKKFCLQ NILSDNKKCPNLRFHDFSTNWKKVKVGDIFTVTRGKVLSKDKISKTKDHIMKYPVYSSQT LNNGLLGYYHDYLFEDAITWTTDGANAGTVRLRAGKFYGTNVNGVLLSKNGYVNDANAEA LNQIAWKYVSKVGNPKLMNNVMQNIMFSIAPSVEEQVIISKLFILHSKSLKIYQANINVY TQLKQFLLQNLFI >gi|297148814|gb|ACGQ02000002.1| GENE 258 317111 - 318034 883 307 aa, chain + ## HITS:1 COG:DR0587 KEGG:ns NR:ns ## COG: DR0587 COG1715 # Protein_GI_number: 15805614 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Deinococcus radiodurans # 159 306 156 305 306 88 38.0 1e-17 MKNYIYRRRSVWKAIVLALRDLGGSASRKQIRRTMAENEYDGLDYEGVFYVKVSKNGKKY SPFLFDFNFGMKNLYTIGFIEEPQRGKDIILTDLGRTADLTNFPSQEQVDKISAYWKQKD ELRYAKKKLKEKIGITGDTESEVEDTDAQDTAEDDWKIQLLEQIKQFSPAKFESFSRLLI SKMGVSIDKTKGVKLSGDHGIDGFGYFRSDEFRTSRVAIQCKRYTNGSVGESEIRDFKGT MDSFNAEYGIFVTTSYFTDSAKAIATQGNRTVTLIDGQELTDLVERYQLHITPVQTYSLD DYYFEKD >gi|297148814|gb|ACGQ02000002.1| GENE 259 318573 - 318869 283 98 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0527 NR:ns ## KEGG: PEPE_0527 # Name: not_defined # Def: transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 4 95 2 93 94 65 34.0 7e-10 MNRTNLKNYLKDNFENDPDFAKDFIQCSLNVKTGIAIINLRKKMGLTREEFARLVNMPQA TILQIEQGDIDVTTDLLMKLATATKQHVEINFSPIFKD >gi|297148814|gb|ACGQ02000002.1| GENE 260 318973 - 319242 455 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526287|ref|ZP_03956336.1| ribosomal protein S14 [Lactobacillus jensenii JV-V16] # 1 89 1 89 89 179 100 2e-43 MAKKSKIVKAEKQRKLIEEYAAKRRELKAKGDYIGLSKLPKDSAPTRLQNRDMLDGRPHG YIRKFGLSRIKFRELAHAGKLPGVKKASW >gi|297148814|gb|ACGQ02000002.1| GENE 261 319257 - 319682 363 141 aa, chain + ## HITS:1 COG:no KEGG:EF0587 NR:ns ## KEGG: EF0587 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 126 1 125 125 85 32.0 5e-16 MQIYYPPLVEQACRFFYGSSDVSVEMKTTIYKMLIEEKLLDENGNPTEYALKKGLILRRE EVPNLSFDEFLELYPVFKRFPASNFRKIGGFWEIKTEFAMQILKEVQAGKFDLEEEVELS NYFEDKKINVNILKFKQRAVT >gi|297148814|gb|ACGQ02000002.1| GENE 262 319675 - 319830 133 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MASITKRGKVWQARYSKRVKKLVKQPDGSVKYKSVHEQKSKSGFTIKKAVM >gi|297148814|gb|ACGQ02000002.1| GENE 263 319980 - 320531 630 183 aa, chain + ## HITS:1 COG:L197116 KEGG:ns NR:ns ## COG: L197116 COG3600 # Protein_GI_number: 15673914 # Func_class: S Function unknown # Function: Uncharacterized phage-associated protein # Organism: Lactococcus lactis # 4 150 151 300 306 119 46.0 3e-27 MYNVFKVVNWFRLKNVEELVSEDVNVEPLTQMKVMKLLYYAQATFLVKYGQRLFDSDILA WKFGPVIAEVHDKYRGKRNIVESISYEAYQDFNTLESDIRASQVLNAVYIAFGSYSASTL MKKTHTEMPWKSTSQGAKIEDDKMEKFYKETGLDTEVSEKYDHVIMRKLYEENREAMDIL KYK >gi|297148814|gb|ACGQ02000002.1| GENE 264 320561 - 320947 256 128 aa, chain + ## HITS:1 COG:SP0889 KEGG:ns NR:ns ## COG: SP0889 COG3654 # Protein_GI_number: 15900772 # Func_class: R General function prediction only # Function: Prophage maintenance system killer protein # Organism: Streptococcus pneumoniae TIGR4 # 10 103 24 118 137 58 34.0 4e-09 MNRLVLDEADEKFQGIQYEDGLSIIEEQLQAIYFGQELYPSIWEKAAFIMQKITKKHIFG DGNKRTALLATVFFLYENGYKWQRSQKDKVDLVLMVTKLDDSKEVMDFLADVLSKECIAV KSNPVDKE >gi|297148814|gb|ACGQ02000002.1| GENE 265 322048 - 322872 605 274 aa, chain + ## HITS:1 COG:no KEGG:LJ1019 NR:ns ## KEGG: LJ1019 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 9 269 12 278 283 140 33.0 4e-32 MTANHQANLPTATEFQVWDKDKIREYIPHHDALKRYITINSDYKVQPSMIVLFDFSSEPI ATKYKSVIFDTQAGIILTTKNSRQLFNSLSKNSTLGLKYQNKLREQLGLKRKHVFALGNY AYFSLNGFSQINTSWLALHQFSDFIQLAETEAQASTIQLNSIQYLFKFSSCAPQIQKRLH ESITLNQELKQTAINFHRELGLNQTINNNLLTEEERLFKLQMANKPSLASLIKQVQNDDF EQYSFFMKSQTGMIWTKNDHQTGLSFTKRNNLMF >gi|297148814|gb|ACGQ02000002.1| GENE 266 322995 - 323498 450 167 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00174 NR:ns ## KEGG: LCRIS_00174 # Name: not_defined # Def: RNA polymerase sigma factor # Organism: L.crispatus # Pathway: not_defined # 14 167 10 163 163 88 36.0 1e-16 MKKENISPQSLLLAWENKALIKQALKKANVYRTYNDYEDLFHEGLITYAQLLDQFTGKSL SEINKLAHKKIFWKINDELRKNQRRSELFLPIEDQEFELEESLSREDWLALATELGQLSQ VESLIFKEHFIHKRPLKILAQQYNFGLRTLSRKKGELVSRMRTKLKR >gi|297148814|gb|ACGQ02000002.1| GENE 267 323740 - 324618 672 292 aa, chain + ## HITS:1 COG:SP1187 KEGG:ns NR:ns ## COG: SP1187 COG3711 # Protein_GI_number: 15901052 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pneumoniae TIGR4 # 3 280 2 277 278 179 35.0 6e-45 MTFRLVQVLNNNVGLACKEDDSQVVIMGKGLTFQKKKGDIIKASAVQKVFKLHEESPSDL TSLLATIPLDFLTVSYSLIDEAQEKYDYSVEPYIYASLTTHLYESAKRLADGRLVETYLP DLEKDYPLPYEIAGYVLDGFATRLNIKFPKQEQKSVALHFLNARTDIHTQNQAQRRKVDK NKQILAIVENELNNHQIYRNRDNANDYERLLVHLKYFINRINQKPAPQVLSAAIFQEVVK DYPRTFAIVQKINDQIKQKMGLEFTNDEQVYLTIHIPRLIRKEETNDKHNEK >gi|297148814|gb|ACGQ02000002.1| GENE 268 324596 - 324940 388 114 aa, chain + ## HITS:1 COG:SP0476 KEGG:ns NR:ns ## COG: SP0476 COG1447 # Protein_GI_number: 15900391 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 5 112 1 108 114 114 57.0 5e-26 MTNTMKNSEEVATIGFSIVAYAGDARSDLVEALKSAKNGNFDEARQLVKEAEKSINLAHN AQTKMLTKEANGENVTLSFIMAHGQDTLMTTMLLKDQMDTILDLYERVFVLENR >gi|297148814|gb|ACGQ02000002.1| GENE 269 324960 - 326369 1355 469 aa, chain + ## HITS:1 COG:SP0477 KEGG:ns NR:ns ## COG: SP0477 COG2723 # Protein_GI_number: 15900392 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 3 463 5 467 470 669 67.0 0 MARVKKLPKGFYLGAATAAYQVEGATKEDGRGQNMWDVYLAKHGQYSPDPASDFYHRYPE DIALAKEFGLNAIRLSISWVRLFPKIDGPVNESAVAYYHDLFKTCLDYGITPFVALHHFD SPQEMLEEGDWLNRKNIDRFIKYAKFCFLTFPEIKNWFTINELISLASGQYLGGQFPPNH HFNVSEAIQAEHNMLVAHARAVIAYHDLNLPGRIGCIHALKTGYPNSNRIEDIQACKRYD AYNNRFLLDGTLLGEYQSETMQLLQEVLQANDASLTILPEDLAILKKAAPLNGMFGMNYY RSEFVREYHGESIDQFNSTGKKGTSAFKFKGVGEFVKRPEVPTTDWDWNIYPRGLFDMLM RIKRDYPNVPTIFLTENGMALKEQLNKEKTVDDSRRIDFIDQHLEQVLKARQAGVNIQGY FVWSLQDQFSWANGYNKRYGLFYVDFETQKRYPKKSAYWFKQLGASLEE >gi|297148814|gb|ACGQ02000002.1| GENE 270 326457 - 328097 1517 546 aa, chain + ## HITS:1 COG:SP0478 KEGG:ns NR:ns ## COG: SP0478 COG1455 # Protein_GI_number: 15900393 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 1 542 25 555 559 602 55.0 1e-172 MAIKDGFISIMPLVMFSSLMILIVQLPTLFGIVLPDNAKLIMVKIYNLTMGIMGLMVAGT TAKALTGNFNRTMPEGKAINSTSTMIAAMSAFLFLAVSPDPKTGALDVGFLGTQGLLSAF VAAFLTVNIYKLCIKKNITIKLPKEVPGTIAQSFKDIFPFAFAVLACVLIDLTSRAVVGA PFASVFQKTLTPLLKGVETYPGMCLIYGLSALFWFVGIHGPSIVMPAVTAFQLANTEANL KLFEAGQHPLHAMTNNFGNYIAAIGGTGATFIVPLVLIFFMKSKQLKTVGKASFIPVLFA VNEPLLFAAPLVLNPYMFFPFILTPICNVILGKFFIDVLGMNGMIYTLPWTVPGPIGVLL NTHFQLISIIFVIIMLVMDAAIYYPFLRVYDAELVKQEKSKAQKLAEEKTFANTMKKELA KQKLDKQEQEQKETNHPNLTKELKVLVLCAGSGTSAQLAHALNEGAKEEKMPIIANSGAY GAHYEIMANYDVVILAPQVRSFYSDMKADTDKLGIKLIATKGAEYINMTRNPKQAVNFLL SQLNLS >gi|297148814|gb|ACGQ02000002.1| GENE 271 328125 - 329408 1420 427 aa, chain + ## HITS:1 COG:SP0474 KEGG:ns NR:ns ## COG: SP0474 COG1455 # Protein_GI_number: 15900389 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 1 421 1 433 440 435 55.0 1e-122 MHKFMDFLQNKLAPFGEKVSKQRHLKALREGFMLAMPLVLIGSLFQVIASFPMESFTKWL HQVGLDVIFNNLISNSFGLIALLTCFGVAYRLATSYNVDGLSAGALAVASMLLATPSITD KTGVAGIPYPGIGGRGLFTAIIVGLITAEIFRWFIQKDITIKMPDSVPEVVGKSFMALVP GAVILTFFEAVTWGISLTPIGNLNNLLGIVIGTPLGLIGGTLIGTFIAILLNSLFWFCGV NGGQVVNTVMQPVWLQAATANLAAWQAGKALPNIITLPFIDLFVYIGGGGATIGLALCLM FLSKSKEYKVLGKAAGIPAFFNINTAILFSFPTVLNPIMLIPFLLAPVTNAVITYFAMAL HLVPLTTGAVMPWTMPPIIGGFFACGGSWAAAILQLVLVIVSFLIYYPFFKAADAARLKA EMEKEDK >gi|297148814|gb|ACGQ02000002.1| GENE 272 329428 - 331314 2098 628 aa, chain + ## HITS:1 COG:no KEGG:SPP_0500 NR:ns ## KEGG: SPP_0500 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_P1031 # Pathway: not_defined # 1 624 1 626 628 705 54.0 0 MTILIKNTATNPTADYAASELAYYLEKITKAEVGFSSDEADIVLQLVADHEENDHAQYQV QDGHVIISGNRPVALLIASYQYLHALGVRFLRPGKENELIPNIEVAQIKNVKAYDHVASY KHRGVCIEGANSLENILEFIEWLPKNGFNSFFIQFANPYTFLKRWYSHEFNHYLEGRDLT DAEIQTMSDEIDAAMALRDLRHHRVGHGWTGEVLGYSSEFGWESGVKLADDKRDLVAKVD GKRDLIQGTPIFTNLDMSNHKVNEEMAKVIVDYAQKHKEVDYLHVGLSDGDNNVCECDEC QKILPADQYVNFLNYLDEKLAEAGLDTKICFLLYHELLFAPQENKIKNPDRFVLMFAPIS RTFEKSYADVDYKHGIPEPTPYVRNKTTLPNSLEENLAFLFDWQRNFKGDSFVYDYPLGR AHYGDLGYMKISQIISRDVRYLDKLHLNGYISCQELRTGFPTTLPNYVMGRTLWDKSLTY EELKEEYFTAAFGKEGMQVSAYLEKLSALSSSDYFNKIGSRINAQLAAQYQGCVSETSAI LPVIIKGLSQSKNSQHENWRVLAYHRQAVIKLATALGLQASGQQAKAEEAWIDFQDFIKL HEDSFEPYLDVYRIIEVATNYAGFKYRE >gi|297148814|gb|ACGQ02000002.1| GENE 273 331492 - 331839 206 115 aa, chain + ## HITS:1 COG:no KEGG:Ldb1019 NR:ns ## KEGG: Ldb1019 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 114 1 113 118 103 47.0 2e-21 MKKHLFFLGKAGTIYYSWLMVLLFISLIIALEGNKVIMWPAVIIGGIFLLLATYTFLCSY IKTENNSLLLKLPYKKKVVLTQKPQKVASWRIFHIYHVELSKYEAVNYLVIQKKG >gi|297148814|gb|ACGQ02000002.1| GENE 274 331847 - 333523 1878 558 aa, chain + ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 558 1 556 556 584 55.0 1e-166 MKSDIEIAQASQGLPITEIAKKLELNEQDLELFGSDKAKINWSAIKQAQANQHLGKLILV TSISPTPAGEGKSTMTIGLADALNNQLHEKTLIALREPSMGPVFGLKGGATGGGRAQVIP MEDINLHFTGDMHALTSAIDTLAALVDNYIYQDNSLKLDPNRILLKRGLDVNDRTLRKIT LGQGSRFNGIEHEASFAITVANELMAILCLATSISDLKQRIGNILVGYSIDDDPVFVKDL HFEGAIAALLGKALKPNLVQTIEHTPALVHGGPFANIAHGANSVMATNLALHLSDYVVTE AGFGSDLGGQKFMDFVSTHLEKAPDAIVVVATVRALKYQAEQSTDNLANENLAALREGFK NLARHMNNMRQYNRPVIVLINKFDSDTEAELNLLQDLIAEHGIDSEVVTYHNDGSLGGIK AAEKVRDLTNQEQGEVMRSYAKDDTIQVKIEQIAQKIYHAGKVEYSEKALAQIEHLKELG KDKLPVIVAKTQYSFSDDKKVLGAPTNFTLHVKNLALKNGAGFIVVSTGSILDMPGLPKH PAALDIDIDDEGKISGLF >gi|297148814|gb|ACGQ02000002.1| GENE 275 333523 - 333981 315 152 aa, chain + ## HITS:1 COG:BS_lsp KEGG:ns NR:ns ## COG: BS_lsp COG0597 # Protein_GI_number: 16078609 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Bacillus subtilis # 3 152 1 152 154 108 41.0 4e-24 MQLLYLFIAFLVVLCDQGLKYYISHSFMLGQEHILIDGLLSFTYVKNTGAAWNILTGQMW LFYIISIIAIIACLYFLYNKKYNNPIFKTGIGLVLGGVIGNFIDRLHLKYVIDMIQLDFI NFNIFNIADSAITVGIVLVFVYLIFFSEKEEK >gi|297148814|gb|ACGQ02000002.1| GENE 276 333981 - 334886 1029 301 aa, chain + ## HITS:1 COG:SP0929 KEGG:ns NR:ns ## COG: SP0929 COG0564 # Protein_GI_number: 15900809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Streptococcus pneumoniae TIGR4 # 5 297 2 294 295 338 60.0 1e-92 MADFELIVATKAGRLDKYISEHSDLSRSRVQELLGSGDILVNGKQEKPSYKVANNDQITV HVPKLVPLNVEPEDIPLDIVYEDEDVIVVNKPQGMVVHPSAGHPNHTLVNALMNHTKFLA ASPEGFRPGIVHRIDKDTSGLLMIAKNANARTSLESQLAHKTNKRVYLAIVHGNFKEATG TIDAPIARNPKDRKKMAIVEGGKEAVTHFHVLEQYPGYALVSCQLETGRTHQIRVHMKYI GHPLAGDPLYGPKKTLKGHGQFLHAKILGFKQPKTGQWLEFQVDPPEIFQKELTYLRSLK G >gi|297148814|gb|ACGQ02000002.1| GENE 277 334895 - 335953 985 352 aa, chain + ## HITS:1 COG:L43866 KEGG:ns NR:ns ## COG: L43866 COG0505 # Protein_GI_number: 15673583 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Lactococcus lactis # 2 351 3 353 357 254 40.0 2e-67 MKRYLILEDGTSFAGDSFGAETISTGELAVQTSNFGYQEALTDPTNAGKILVFTTPMIGT TGINSIDYEAIDPSVRGIICNEIATHISDSPNFQELDYFLKEKKIPAISGVDTRALAHKI SNQSKIKASIMDTNDEHAFDQIRALVLPKNKTTTISTSNSYAAPNIGKTIAVVDLGLKHS MLRELSLRKANIIVVPYNSKPQDILNLKPDGLVISNGPGTATEVKKGLAPLFDEFYGKLP ILGIGLGFLAICDYLNIELIDLPKPFNGVNYPVILQNSNTIWQTAMNIPQLALSENGGIN FTETYYDLHSDLLAGFYLKDKEVLATAFNPEGAPGSFDGLKIFDQFMQLMEK >gi|297148814|gb|ACGQ02000002.1| GENE 278 335955 - 339128 2700 1057 aa, chain + ## HITS:1 COG:BH2536 KEGG:ns NR:ns ## COG: BH2536 COG0458 # Protein_GI_number: 15615099 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Bacillus halodurans # 1 1057 1 1058 1062 518 30.0 1e-146 MPLENDLNKVLVLGSGPNIVGSVAEMDAYTNSAIKAFLEDDIHVVLVNPNPATVSSDRQK GVTVYLEPMTLAFMKRILRMEEPDAIVTAYGSTNALAVAKELLDDGIIDDMKIKLLTTNK ELLNLVDHKKQIAFMQKNNFATSESWHLVKTDTSESIADLLSHARFPLLVTKYHQYIHNE HFKFKNVAELSEFFKTENDTEADHFNLNNYRLTEDLSNWEEVIVDVLRDNRGNFNFINIS SCLEDVAINSGDSLIISPALTLNNDHVRKIRKLSKKIMNRLNIHGFLSIHFAVSHHDTEI DLKVLTLKNRLTRTSVIARRVAMYDIGYVLAKIALGYNFNEIVQPLTGQNAAIEPVLDAV SIKFPYFSFSESGLNHYQLGDRMQASGESIGIGRNFEAAFLKGLESNFDINGLRDFYYLG KAKDGQQLLQQLAHPDELHIITLLAAISSGLTYTQIHEVCRLHPLYFEKLSQVIEVGKQL KNELSKEVLVTAKKLGFSNTLISIITQKSLEDIGDLCRNYQLNSSYLLLDGSAGLYRANC SVCYSSFGSENEVSPLKANRKVLVIGMKPMQVSLTSEYDYMIYHALKTLKDEGIATVLIS NNSEAVSTAYELVDRVYFEPITFENIKKIAQKEGIDEVLTQFSGKEINQLRPNLINAGLK LLGQENLISELAKQKINVDELPIELVPGEKIYTESQAKNFVEKHGFPVLIGGRTRELKVK SAVVYDIPALEKYINENDIDEGTISRFIEGRKYEVIAISDSHNVTIPGIIEHLEQTGSHA SDSIAVFQPQNLNKEQRAFLGKMTKEILPLIQMKGLFTLHFLQADGQFYLLQVKTYAGHN LAFLSKSLNSDLVGITTKCLLGKSLKELNLPETIWPASELIHVKMPVFSYIDYQSGNTFD SKMKSSASVMGRDTLLSKALYKGYEGSNLTIPSYGTIFISVRDEDKQRTINLAQRFHRLG FKLVATEGTATILAEAGITTGIVKKVQEDQHNLLEKIASHKIVMVINVINLSDNASQDAI RIRDVALNTHIPVFSSLQTAELILEVLESLALTTQPI >gi|297148814|gb|ACGQ02000002.1| GENE 279 339232 - 339405 240 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282933762|ref|ZP_06339117.1| ## NR: gi|282933762|ref|ZP_06339117.1| hypothetical protein HMPREF0886_2978 [Lactobacillus jensenii 208-1] # 1 57 1 57 57 88 100.0 1e-16 MSNKINDVALNKQDILENAIPLVAKKKHRLLKSVGITIISLSGLVGLGILGRKRRLF >gi|297148814|gb|ACGQ02000002.1| GENE 280 339702 - 340250 511 182 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851106|ref|ZP_05556495.1| ## NR: gi|256851106|ref|ZP_05556495.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 182 1 182 182 318 100.0 8e-86 MFTLKFMSIKLLEDNQDEWIYSIYTDYQEGQITINKQTFDRKLTSFEKASKRVQIKKETV EYEIYYRIAKLMKIKPGIKKYYWLHSSNFSLMPYVNFMSIKLLEDTDREWIYEIYTDCEE GMVIIDKETKIGDITSFELTSKQLNVKRETVEFWIYYCILDLMKTDPGIDEFYWINVKLD KD >gi|297148814|gb|ACGQ02000002.1| GENE 281 340650 - 340871 359 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851107|ref|ZP_05556496.1| ## NR: gi|256851107|ref|ZP_05556496.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] # 1 73 1 73 73 122 100.0 8e-27 MSNVLKKYIEEKNISAYQISKESGIPYTTINNALKDGKKLEGQTVKVLKAVAIATDTTPG QLFDELIELDKRV >gi|297148814|gb|ACGQ02000002.1| GENE 282 340994 - 341284 215 96 aa, chain + ## HITS:1 COG:no KEGG:LGG_02056 NR:ns ## KEGG: LGG_02056 # Name: not_defined # Def: phage-related infection protein # Organism: L.rhamnosus # Pathway: not_defined # 5 96 8 99 101 80 45.0 2e-14 MDVAEALARLKFLVRHNKFKMVRRTDKMAMPVSVPLAKELIRQLSIDDFVKHEPNRNNPL QFVWIFKTADEQKYYIKFVFTENNNLVVFISFHLDY >gi|297148814|gb|ACGQ02000002.1| GENE 283 341298 - 342221 833 307 aa, chain + ## HITS:1 COG:L197116 KEGG:ns NR:ns ## COG: L197116 COG3600 # Protein_GI_number: 15673914 # Func_class: S Function unknown # Function: Uncharacterized phage-associated protein # Organism: Lactococcus lactis # 4 306 5 303 306 180 35.0 3e-45 MVYKKDFSTTYTINGHEYAITFPALFDSNTNELIPNNELDDKAAEKARQLYRKDMGLISP QDLKKYRAKLSLSQRNLAELTGLSPNTIALYEAGAFPTAANNNILKALIKNDQVLQQYLI DNSNQYSDELLSKINSYLKNENSIISPDKIKPKYTAVQLANWLLVENYFERECNKNIDPL SQMKVIKLLYFAYGRYLASTKNKLFSSPIIHLQYGPVVTEVHEKFKGQTVLNDEKIEKGA IEDYNTVSQDEEISELLHAVNQKYIDYTAAGLSKITHRKGSPWSLTQEKLIIKDQLIFDS FSKGREE >gi|297148814|gb|ACGQ02000002.1| GENE 284 342383 - 342667 337 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851110|ref|ZP_05556499.1| ## NR: gi|256851110|ref|ZP_05556499.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 94 1 94 94 164 100.0 1e-39 MITLKYMSIKLLEDNQDEWVYSIYTDYQEGQIAINKHNFDGKLTSFKKASDLLRIEKGTL EYEIYYRVVKLMKTNPGIKKYYWLHSTKKMEPLD >gi|297148814|gb|ACGQ02000002.1| GENE 285 343629 - 344684 897 351 aa, chain + ## HITS:1 COG:L57903 KEGG:ns NR:ns ## COG: L57903 COG0582 # Protein_GI_number: 15673214 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 345 1 356 356 252 40.0 6e-67 METKKYLTLIDQELNNLPVFIREYNLSTNHSLTTSYQYLTEIRRFFDWLRHQSLSPANSN VEISINDLKQLTRSDMMIYIDALRHSKNQQGRLNSPTTVNRSINALRSLFTFLTITADKP YFDHNIMLKIQSLNNLETLNYRAHVLESHMYTGNLKYEFLDFLSNKYASLCNKQALASFK LNKERDIAIIALILGTGVRVSECSSINISDLNLKEATLDLTRKGGQKDSIPVASWTLPYI SAYAEVRTKRYHAEKNDKAFFLTYYHKKTSRITPNGIERLVSKYSKAFGHPLTPHKLRHT LASELYGVTKDQVLVAQQLGQKGTTATDLYTHVDQKEQRKALDQLADNHDN >gi|297148814|gb|ACGQ02000002.1| GENE 286 344899 - 345267 219 122 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01143 NR:ns ## KEGG: LCRIS_01143 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 1 116 1 118 119 108 52.0 5e-23 MDMCLGAVIRDRRKAMKLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMD TPSLIAAAYGKVDISSYKLKGDDIFIQKIVTELRKLSTFRAEKVCKAILSLVKEINEPTR TK >gi|297148814|gb|ACGQ02000002.1| GENE 287 345309 - 346811 822 500 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01706 NR:ns ## KEGG: LCRIS_01706 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 103 497 12 421 423 192 31.0 2e-47 MSIRYCFNCGHKINKADVYCTYCGANQKTRIVPNSEAERKRILLTRSDFKKVKKYRNNNG LLNKVDLSVFRQKWIKFNQNHSFKQIFHYLPKNNFSKRKQRLVIGLLLGTCSVLFFAFWG MNYYSRDNQLSQITNYLENPNKKGFAAYIVSDKTGAISESDLKPFQNFLVNNPTETNNLI KAISHNKSYKSSIKLIKNGAYWLVFPRYKLSLPTYSLTVTTNHANSKLKINNNYKSMSKQ GNTYAVSLNKLIVGQYNLSTHVKLSGRDLSSTKSIKLFNNQTVKMDIKTLTFTVQSLPNA SVYINNKKVATLNEQGKTTINNYPITSKTKIFVSYENNDSTIDSEISSSLAHFAQKGEAV GNLQKKNGKYVYTPTWQGLASSQEAKTLLAKAFSKKITSDDFVNSTNNTDYKTLKKMFKG FNKDSKIKSYSTSVKIIKVLPLGNNESQISYEVTYKFKHKSDTRIQVMKYSNAILYKKGN NIKIQSVGGGSIISDKTKKN >gi|297148814|gb|ACGQ02000002.1| GENE 288 346965 - 347630 710 221 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851114|ref|ZP_05556503.1| ## NR: gi|256851114|ref|ZP_05556503.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 221 1 221 221 325 100.0 2e-87 MENQPKENTKEISSSFATWLKTSFTSPAQAVKGQVWFGIVTILVIELTSLLAKQTDYTAL QYLAATSAYFNALYGILTSKVWMLGVTIFGVIARLVYISIIWFTHNFIYKPKQQVKLLDF INDYAHHIAISWVAVIIIVALSYSTAEWTSIATMILGFVSIFINAVATFQMLYSSKEEAK HDPIFASFLFLLLFAILIALTFAFASLIISAYINTVGISIY >gi|297148814|gb|ACGQ02000002.1| GENE 289 347715 - 348695 742 326 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851115|ref|ZP_05556504.1| ## NR: gi|256851115|ref|ZP_05556504.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 326 1 326 326 596 100.0 1e-169 MILQFHYPALKNWFPKSEEIISLNHQYLKEVHFIGNSEVIEISLNSAITLSEAEQVRNFF DLIFSLFTGTKVACGQRFIITSDGKYIFIDSRNPLIHYNRELKIEASRLDFKVFKSQAKQ LFEQIDAKFFLCERLIDDYLNDDLSESFNGFIAAISNLYNEKVSYQTIEQKADQILQLIP NFLLDKLEKALKQQQLYLINWKGIEDTHLKLTIQSFPSNKDWLVNVLNLILKNAGWNSNN ITKTESFLANKVMVQKSIQVLKFFEGLIILQLIGLEAKDDLIESCNNYLDFLLFNRHNLA FEKATITKDEFLKVEPVFPLLKEIDD >gi|297148814|gb|ACGQ02000002.1| GENE 290 348820 - 349287 701 155 aa, chain - ## HITS:1 COG:SPy1531 KEGG:ns NR:ns ## COG: SPy1531 COG0783 # Protein_GI_number: 15675430 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pyogenes M1 GAS # 2 153 24 175 175 178 55.0 4e-45 MKYQETKKVLNQLVADLNQMITVVHQTHWYMRGRGFMKLHPLMDKFMDDLNEQMDVVSER LIAIDGAPFSTLREFADNTKISDEKGRWDRTMDERLEILVKDYRYLADLYQKGIDISDKE GDASSNDIFTSFKTDTEKRIWMLQAELGKAPEIDA >gi|297148814|gb|ACGQ02000002.1| GENE 291 349367 - 349612 303 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851117|ref|ZP_05556506.1| ## NR: gi|256851117|ref|ZP_05556506.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 81 1 81 81 145 100.0 1e-33 MKITELIQRVDDYCHNCEFFQGLKGQIDLIDYNDDYLTFDYIAPKKSTIVKLVYIVIARE NGEIFLISKNNYRKIAKKYKL >gi|297148814|gb|ACGQ02000002.1| GENE 292 349719 - 350603 941 294 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 283 4 280 283 207 39.0 2e-53 MKIALITDSTSYLTKEEVKDNNIIVVPIPVIVGDKEFKEGIDITADQLFRMQDAGAAFPK TSQPSMGEMISLFNRLHDEGYDAIITITLAGTISGFNQTLMNIARTNPEYNLYPYDSKIT IRLMGYLVLAAAKMIKNGLSADEIITRLDKIRDSIDELFIVDDLNNLSRGGRLSNAGAFI GTMLHIKPLLTFDDETDKIVAFDKVRSMKRAVKKVESLTLERVNKLPFKKDLRFLVVHSN DATQAEEIKNWVNENFPENPVEVDEFGPVIGTHLGEKSIGITWMKDINKVKLDK >gi|297148814|gb|ACGQ02000002.1| GENE 293 350677 - 351090 368 137 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01133 NR:ns ## KEGG: LCRIS_01133 # Name: not_defined # Def: L-fucose operon regulator # Organism: L.crispatus # Pathway: not_defined # 1 129 1 129 138 115 54.0 4e-25 MDVLHFNEIAETIKKMILEQAGLNLSQTRILLFFDETENDSLTMGELAKGLNISLSTLSR QLQQKKTKELLDVVRSETDSSKLVHLNEAGVLKASELKQLLSSIHDKIYALWNEEETKSF LTHMDSVLDELNKETIQ >gi|297148814|gb|ACGQ02000002.1| GENE 294 351370 - 353058 1718 562 aa, chain + ## HITS:1 COG:SP0966 KEGG:ns NR:ns ## COG: SP0966 COG1293 # Protein_GI_number: 15900843 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Streptococcus pneumoniae TIGR4 # 1 559 1 549 551 389 40.0 1e-108 MAFDGLFIHSLLKNLSPTLLTGRLTKIYQPFEHDLVLVFRKNRKNYQLLLSINPQYPRFY LTKNSLANPKVAPTFVMVLRKYLEGSILQDIKQVGQDRIINFYFSNRNELGDEVELVLSL ELMGRHSNVILYNKQDSKIIDLLKRVNPDENRARLLLPKAKYELPPLNPGIDGFLLTKEE FSKLASENSAFDLAKKINGLDRDDRLELTGYLEDDYSFESFKTFFNHFENPKGYIFRNNK RKERIFVYQPYHLDLTPYSKNEDINQALDEFYHEQETRDWVHQRAKVVLNIVSNEQKKLS KKLIKLRKQLDQAENSEDYRIKGELLNAYLHLVKAGMTEVEVPNYYDENRPLKINLDPAL SPARNAQKYFTKYQKLRNSIKHVKKQISLAQENLAYFDSIETAVNNAEPEDIDSITDELV AQGYIRRNRKQRNKKIDEKALNKFKLSSGKIVLVGKNNYQNDWLTFKKANKHDIWFHVKN MPGSHVILTDSQPSEEDIREAAEIAAYFSKGRFSGHVQVDYVADKRVKKPNGAKPGFVIY TGQNSIEVTPEEKSVLSKRIDK >gi|297148814|gb|ACGQ02000002.1| GENE 295 353125 - 353724 897 199 aa, chain - ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 6 198 1 194 194 236 62.0 2e-62 MTDKKMLFPQLQLDKAVGPKVVMKTNMGEIEFQLFEKQAPMTVENFVRLAEKGYYDGVIF HRVIKDFMIQGGDPKGDGTGGQSIWGHPFEDEFSSQLFNFRGAISMANSGPSTNGSQFFI VQNQNMPKRYTRDMREAGYPQEVIKRYKQGGTPWLDFHHTVFGQVIKGMDVVDAIAKVAT NNMDKPNDDVVIEGITIKK >gi|297148814|gb|ACGQ02000002.1| GENE 296 353791 - 354726 1278 311 aa, chain - ## HITS:1 COG:SP1534 KEGG:ns NR:ns ## COG: SP1534 COG1227 # Protein_GI_number: 15901378 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 309 1 309 311 334 58.0 1e-91 MAKELIFGHQNPDTDAIGTAIAYSYFQNHFGFDTEAVALGEPNDETAFALKKFGFEAPRV IKTAANEVDAVMLVDHNEPQQSVSDIDKVTVTHVVDHHRIMNFNTAAPLYFRDEPVGCTS TVLWQMFNEKGLEIPQNIAGIMLSAIISDTLLLKSPTTTDKDHQAVEALAKIAGVDYKSY GLEMLKAGTNIADKSEEDLIDLDAKSFELNGHTVRIAQVNTVDLPEAMERKAAFINAMEA SSKANGYDMFVLVLTDILESNSEGIVVGGDETKALFEKAFDKKLVDDAVELPGVVSRKKQ VVPPLTEAFEG >gi|297148814|gb|ACGQ02000002.1| GENE 297 354793 - 357273 2944 826 aa, chain - ## HITS:1 COG:SPy0910 KEGG:ns NR:ns ## COG: SPy0910 COG0188 # Protein_GI_number: 15674931 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 8 805 4 812 819 825 53.0 0 MAQKTERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTFD KPFKKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAM RYTESRLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYAT EIPPHNLAEVIDATIYLLKHPNASLADLMQFVKGPDFPTGAIVLGDKGIKEAYESGRGRI QVRAKTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGL SIVIELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDHMTPVQVGLKRILSSYLEHDADV ITKRTKYDLSKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIDKFSFTPRQA EAIVSLQLYRLTNTDVNALQAEKSDLEEKIASYDLLLTDRKVLEKQIIKELNAVKKEFGS ERRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYLKRSSLRSFQSTNDSENGLPDFDKV VFEKTMSTLTNLYIFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQIIAVFELA KLDSRLNFLLATNDGYIKQLALADIQPTRTYKSRAMIAMKLKETASRVVRVEMISPDTKK EITLFTNHAYAVRYDVNEIPTSGARAAGVKSVNLKDDDFVVDYVTVLPEYLDMMKLGIVT QRGAFKEFKYELINKVSRAKRGVLVLRELKKNPHRIAGVVLFAQNHELLVETSSARTMTI KTNDFPLGDRYSNGSFVIDPIGDGEPTSLTLGKPTHYGRDDVSELF >gi|297148814|gb|ACGQ02000002.1| GENE 298 357286 - 359229 2115 647 aa, chain - ## HITS:1 COG:lin1325 KEGG:ns NR:ns ## COG: lin1325 COG0187 # Protein_GI_number: 16800393 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 5 647 4 646 655 857 67.0 0 MVKANSYDDSSIQILHGLEAVRKRPGMYIGSTDIKGINQLVYEIVDNSVDEAMAGYGKEI NVTIHEDNSITVQDFGRGMPTGMHESGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVGS SVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGSLKHLGKTNDKTGTTITFKPDERVFST TKYKYETIEERIRESAFLLKGVKFTLKDERTPNHYEEFLYTDGIKSFVSYLNEGKDTFGD VFYFEGKQDSIEIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSGFTRAFNDYAKK QGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQARSAVDALVYEKM SYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLSGKLTPAQSRNPK KNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHTIGA GVGTEFKIDDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGRVYIALPPLYRL QKGNGAKAKIEYAWTDEELERDEKAMGKGYSLQRFKGLGEMNADQLWQTTMNPESRMLIR VKIDDAALAERRVTTLMGDKVEARRKWIEQNVKFRMGEEGSILEAEN >gi|297148814|gb|ACGQ02000002.1| GENE 299 359314 - 359982 725 222 aa, chain + ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 8 199 5 204 213 154 50.0 1e-37 MLTIKIALLLILAYLLGSFPTGVIVGKVFFHKDIRTLGSGNPGSTNTFRTFGPVAGMSVL LVDVLKGTLATLLPAIFHLGPHPLGIVFGMVAILGHTFSIFLGFKGGKAVATTAGFILGY NLAFFCVCAGIFFPMLFITSIMSLTAMLCITLFFIFSFLFHDPYLSSMMFVLLILIFNRH KANIIRLKNGTENIIPFGIYYWLKINKFIIKNLKKDTRRFFV >gi|297148814|gb|ACGQ02000002.1| GENE 300 360002 - 360886 1008 294 aa, chain - ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 1 291 1 297 298 202 38.0 7e-52 MEYEIKNQFLNVKINSRGAELTSVKSVNSDTEFLWQADPEVWNRHAPILFPIVGRLKNDT YQYQGKSYQLSQHGFARDKEFKLLSQESDAISLVLRDDEASLKEYPFHFELVITYRLLNN LLIENLSVKNPANEEMFFSIGCHPGFNVPVNNQIKKSNYYLQMLPSKDHIRIPLNKETGL HDWAKRTIAATDTPIELTDDLFKHDALIFQLKGETKVSLRSEKTSYHVNVTTEDSPFIGV WSQYPKTADYVCIEPWWGLCDDVNADGDISKKRGIIKLGPNEEWTGKITIALHD >gi|297148814|gb|ACGQ02000002.1| GENE 301 360900 - 362282 1265 460 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 5 460 9 466 466 491 56 1e-137 MSIKTPKEIVRLLNEYIIGQNEAKRAVAIALYNRYRRLQLPKSLQQDITPKNMLMAGPTG VGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVTEAVRMEEKEQFKRVK ADATKEANKTLVRLLVPGIKHENRENQMQQMMQMLMGSQQAEQPQEEVTDDIRNQRLSVA EQLNKGLLEDRQVTIEVEQAPKVNPMGDMMGQMGMDMNSLLGDMMPKKKVKRTLAVRDAR EVLIQEQSRKMVDYDTIYQKAIERTSQNGIIFIDEIDKITGKSKDAGQVSREGVQRDVLP IVEGSTVQTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKADFVSI LKDPENSLLKQYIALLEADGVKLIFTQEAIDKIAEIAYDVNQGTDNIGARRLATILEKLL EDVLYEGPDMEMGEITITQAYVEEKLSDIIMNKDLTKFIL >gi|297148814|gb|ACGQ02000002.1| GENE 302 362283 - 362813 870 176 aa, chain - ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 2 174 6 179 179 177 54.0 1e-44 MTTIVSVKHNGKTAIAGDGQVTLGEKYISKKSAKKIRRIYNNQVVIGFAGGVADAVSLEE MLEGKLESYSGDLRRAAVEMAQSWRKDPTLQKLQAMLIAFNDKDLLLISGNGEVLEPDEN VVAIGSGGYFAQAAAVAMTRHAKDMDASEIAKEAVGIAADIDVFTDHEIITDEIGD >gi|297148814|gb|ACGQ02000002.1| GENE 303 362816 - 363724 1135 302 aa, chain - ## HITS:1 COG:BS_codV KEGG:ns NR:ns ## COG: BS_codV COG4974 # Protein_GI_number: 16078677 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 4 297 5 299 304 253 43.0 4e-67 MTKKSLLEQFKDYLAYERGYSNLTLTAYINDLKQAEDFWKNNGGFNGFEQVSSRDVEIFI TSLASAGLSQASQARKLSSLKSLYKFLTRRNLVAVDPTQTVSIHRKSKKLPEFFYEPEIK KVLDSLSASDKFTVRNKAMFELFYATGMRVSEVSNLTLQQVDFDVQMILVHGKGNKDRYV PFGDYAKASLLRYLNEARSLFNPDENNHFVFLDNRGHQLTSRGIEYIMRKVFQKGGLSAN VHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMERLQKDYEKFFPRNEG KD >gi|297148814|gb|ACGQ02000002.1| GENE 304 363717 - 365036 1601 439 aa, chain - ## HITS:1 COG:BH2466 KEGG:ns NR:ns ## COG: BH2466 COG1206 # Protein_GI_number: 15615029 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Bacillus halodurans # 2 435 3 435 435 567 61.0 1e-161 MTQKVTVIGGGLAGSEASYQLAKRGVEVHLYEMRPIKMTPAHETGNLAELVCTNSMRSDQ LTNAVGLLKEEMRRLDSLVLRAADATKVPAGGALAVDRELFSKYITDELAKFDNLHLHHE EITKIPNDGITIIATGPLTSDDLAKQIQEFSGTSSLHFFDAAAPIVASDSINMDIVYKKS RYDRGEAAYLNCPMDKQQFTRFWEELVKADTAELHGFEKDEVFEGCMPIEVMAARGEKTM LFGPLKPVGLEDPKTGKTPYAVVQLRQDNAASSMYNLVGFQTHLKYGEQKRVFSMIPGLE NARFVRYGKMHRNTYMASPDVLNATYEAKKQAGLFFAGQMTGVEGYVESAGSGLVAGINA SRLARGLDLATFPVETALGSMANYITTTSSKHFQPMNASFSLIPPLEKKIRNKRERKQMI SERGLEKLAEFAEEMKIND >gi|297148814|gb|ACGQ02000002.1| GENE 305 365136 - 367223 2273 695 aa, chain - ## HITS:1 COG:SPy1164_1 KEGG:ns NR:ns ## COG: SPy1164_1 COG0550 # Protein_GI_number: 15675140 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Streptococcus pyogenes M1 GAS # 7 572 27 589 589 708 63.0 0 MPTRKKNLVIVESPAKAKTIEKYLGRSYHVIASKGHIRDLPKSQMGVDIEHDYQPKYISI RGKGETIKELKKEAKKAKFVYLASDPDREGEAIAWHVAHILDLNDGQKHRVTFHEVTKDA VKNAFKNPRMIDMDTVDAQQARRVLDRLVGYSLSPILWAKVKKGLSAGRVQSVALKLVLD REQEIKDFKPEEYWTIDAEFTKGRKKFQASFYGLDGKKTELPNNEAVQAVLKKIDKNKPF TVETVVKKERKRQAPAPFTTSTLQQEANKRLGYRTRRTMSIAQQLYEGISLGKEGTVGLI TYMRTDSKRTSPVAQAEASKFLTETFGAEFASKSARHFKNQEDAQDAHEAIRPTSIYRTP ESLKRSLTSEQFKLYKLIWSRFAASEMTPAVFDTVRADIVQNGVMYRTTGSKMKFAGFTK VYDAGSDKSVELPDLAEGDNVKLSKQDNKQHFTLPPARYTEASLVHALEENGVGRPSTYA PTIDTIQRRYYVKLEGRSIVPTELGEIVNNLVGKFFPDIVNVDFTAQLENDLDHVEEGKK NWVKVVDEYYKPFSKELEKADSEIEKVQIKDEPAGFNCDICGAPMVIKMGRYGKFYACSR FPDCRNTKAIVKEIGVVCPKCGKGQIVEKKSKRGRKFFGCSNYPDCDFVSWDKPVGRDCP NDGHFLVEKKTKKGLVVQCPNGDYKEEREESENSK >gi|297148814|gb|ACGQ02000002.1| GENE 306 367385 - 368233 678 282 aa, chain - ## HITS:1 COG:lin1313 KEGG:ns NR:ns ## COG: lin1313 COG0758 # Protein_GI_number: 16800381 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Listeria innocua # 1 278 1 282 286 188 36.0 1e-47 MRMTIKEFLLRLKLERGIGYQKSLAILTKLTSLSAVNLADLETLPEQIKELAIKAYSNPK HPHTIDLLTKQCKIISFFDKEYPDKLRQIYRPPLLLFAKGDISLLKKPITTIVGARQAGS YTQQALDAWVPRLSQDYVIASGLAKGADRFAHETALKYHGKTIAVVGNGLNHFYPKENQL LQLEIIKHGLLISEYLPDTPPRPFRFPERNRILAGLSDNVIVTEAKSESGSLITANYALY ENRNIFALPGSVFSPLSQGPNELIKAGACPLLNLETFYDNIH >gi|297148814|gb|ACGQ02000002.1| GENE 307 368298 - 369191 519 297 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851133|ref|ZP_05556522.1| ## NR: gi|256851133|ref|ZP_05556522.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 297 1 297 297 478 100.0 1e-133 MFAETTSLTESIKNQTLTANRKIYAKVDGDEDFQLVHQDRATLTYDEKVSIENNQRKFTL DKEVSSEWPNYTMPKKEGYTAFLTDETGQKEEKLADGIIPKSEVTLTSLDNTNLDRNYYI IYYPDERTLSVEYIDKTTNEILSKDSYSGKSGEKITLNIVNPDKNKYSIDNNIIPSSYTF TGDSNQQVKIYLKDKNSNSKKEEEKRNKITSPNINLKENPKTNGSLPDTYLNDDDKAISL YTMPNRKKAVMKNKKNKRNSSFKKAELNFNQCSLIVLGTVIIISSFFICKIKLKSEV >gi|297148814|gb|ACGQ02000002.1| GENE 308 369593 - 369724 71 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIFNYNIILIGIKLINQPNNIMYDYFIKQDKYYIKDVKAFNFD >gi|297148814|gb|ACGQ02000002.1| GENE 309 369735 - 370163 476 142 aa, chain + ## HITS:1 COG:SA0906 KEGG:ns NR:ns ## COG: SA0906 COG0454 # Protein_GI_number: 15926640 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 20 142 17 140 144 77 36.0 7e-15 MKIQTTKDIRSTLYQQILDLRKEVFIKEQHVPANLELKDEQGPIYYGGLINNNLVCCARV KEEHDKTWHIQRVATKATFRGQGLNSQLIKRIENDAQAKGISTLILGAQDQAQGFYLKLG FKVVGDAFIDAGISHHMMQKKI >gi|297148814|gb|ACGQ02000002.1| GENE 310 370210 - 370968 847 252 aa, chain - ## HITS:1 COG:BS_rnh KEGG:ns NR:ns ## COG: BS_rnh COG0164 # Protein_GI_number: 16078669 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Bacillus subtilis # 1 248 4 254 255 225 49.0 8e-59 MSIKEIKEILQGEVDSETLALLQKDERKGVQKLLESYNKRLAKLAKAKAAFMNRFQYEQK AWKAGSIVAGVDEVGRGPLAGPVVTAAVILDDSFDLVEVNDSKKLSPKKRLELYPQILDK AVAVGIGVGSPELIDRINIYEADRVAMAQAVNNLAIKPDLLLVDAMNVPVDIKQIELIKG DSKSNSIAAASIIAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHIAALKEFGATPIHRR SFSPVSEYDFNK >gi|297148814|gb|ACGQ02000002.1| GENE 311 370965 - 371807 923 280 aa, chain - ## HITS:1 COG:L128951 KEGG:ns NR:ns ## COG: L128951 COG1161 # Protein_GI_number: 15673276 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Lactococcus lactis # 1 278 1 277 282 258 42.0 1e-68 MAIQWYPGHMNKARVQLEDKLSLLDVIVEVVDARIPASSRNPLISDIVGDKPHIIILNKA DLADPNEINKWEAKLKSDGKFVLKLDAQHNTNMAPLFKLIKLAAKDRIDKLEAKGASNPT IRICLVGIPNCGKSTIINRLVGRNVAIVGDRPGVTKRQSWLKTSESVQILDTPGILWPKF EDQAVGFRLAALGSIKESVFHADDVALFVMEYLKENYFKSLVKFSRLSEQSVNDLPLPEL LLAMTEKYGMRDDYEKMSLFLLNQLRKGRLGRINLEKVEA >gi|297148814|gb|ACGQ02000002.1| GENE 312 371927 - 372703 950 258 aa, chain - ## HITS:1 COG:no KEGG:lhv_1070 NR:ns ## KEGG: lhv_1070 # Name: not_defined # Def: Na+/H+ antiporter # Organism: L.helveticus # Pathway: not_defined # 1 257 271 530 530 263 51.0 4e-69 MVFVGNQLSNIFTDVLNGSVFVILGLVLIRLLEEDIFNAQTIMAILVGAFLYVINVLVRY FYTFLTEFRHNQKRAWTFSLGGIHGAVTFALAYTLTEETIKLSDIHFALLASSTLIILSM VVPTFVFRFLLPKKVADLDQIKEMRKVRKNMVEYAMLELDKIYLPEPLRRQLLYDLKAQL DEVSMKDFLKEMNTTVRRPDLKPHDREFRDEVYRYAFRLERNYLGQIAQSEQKYREGFLK LYRETLMAEILFLGSKED >gi|297148814|gb|ACGQ02000002.1| GENE 313 372772 - 373407 367 211 aa, chain - ## HITS:1 COG:SA2228 KEGG:ns NR:ns ## COG: SA2228 COG0025 # Protein_GI_number: 15928018 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Staphylococcus aureus N315 # 3 206 36 237 692 93 30.0 2e-19 MILGLVPLLNNLVEDFQSEVFMELIVAPLLFFEGQNTQLYYVKRFWKSIVGLTVVMIVII ELVAGFSLYYLTGMSMAFCFLLAAIATPTDATAGESVTHGLKVPRKVAYYLRNESLFNDA SGLILLAMMVSWYVNKNLVIIESVGQLFISVVGGIVLGIISSLLLAMIRQKTMQSSSLDN SNFSLNTPVQIAYLMTPFLLYFLLKKSMYQV >gi|297148814|gb|ACGQ02000002.1| GENE 314 373567 - 373791 311 74 aa, chain - ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 70 4 68 77 67 58.0 5e-12 MAYRESFYRFLMTQRNPDSHDEIAEFANNAQHDQQFPKQEQDYEKLSDYLELNASYLPSM TIFDRAYELYKDNM >gi|297148814|gb|ACGQ02000002.1| GENE 315 373899 - 374741 1141 280 aa, chain - ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 276 1 274 279 202 40.0 7e-52 MPKIKVITDSSVQLSPEEIEKYDITVVPLSITIDDKTYVDGEDITRKDFIQKMDSANELP KTSQPAIGRFVDEFKKLAADGSQVLGIFMAKCLSGTVDAARQASELVDFDVTIFDSGYTD RAMGFEVLEAAKMAQADKGLDEIIARLKQMQDQMHLEMMVPDLTNIIKGGRLGALAGRVA TLLNIRLFLEMTTNVLNIKAKGRGKKFTKKFNQDLIELVKNTPNVKHLGISYVDTPDDME ELANELKEINPDMDILIQETSPIIITHAGHGAYAVMFYSE >gi|297148814|gb|ACGQ02000002.1| GENE 316 374890 - 375555 566 221 aa, chain + ## HITS:1 COG:lin1978 KEGG:ns NR:ns ## COG: lin1978 COG1272 # Protein_GI_number: 16801044 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Listeria innocua # 21 221 10 210 210 175 51.0 5e-44 MNFKKIWQKPQHQPKVIPLLDNIFSAITHGIGFGLAVTALVLLIIRAASTHSPLRVVTFS IYGASLVFLYLFSTLYHSLIYTKARKVFQIFDHSSIFLSIAGCYTPYSLVAIGGIKGWLI FGIIWGITVFGILYYILAKNKNSIIEVIMYIAMGWLVIFSAPQLYSYLGTTGFWLLVAGG ISYTIGALFYSMIGVPMMHTVWHLFVLAGSILMFFSVLFYV >gi|297148814|gb|ACGQ02000002.1| GENE 317 375619 - 376101 440 160 aa, chain - ## HITS:1 COG:no KEGG:BcerKBAB4_5408 NR:ns ## KEGG: BcerKBAB4_5408 # Name: not_defined # Def: hypothetical protein # Organism: B.weihenstephanensis # Pathway: not_defined # 4 160 8 171 190 73 29.0 3e-12 MSLKFYKIDSDYLCQLSKIDKNIKINHGNNQRPYVGIIVQENSQKYFIPMGSPKPKHKYM KNNLTFFKIQHNNKFLGVLNINNMLPVKKGLYQEIIFDDENEKYRYLLYNQWRIINKYED KIIHNSHILYRLITTEKEKHINLQKLCPDFLRLEEFCKGF >gi|297148814|gb|ACGQ02000002.1| GENE 318 376325 - 377485 1287 386 aa, chain - ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 2 386 7 392 394 330 46.0 3e-90 MKALPVVQTLTQAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPEEVKQLFERSIDTGIQ HGTVTVLYNDDSYEITTFRTESGYQDYRRPDHVEFVQNLEEDLKRRDFTINALAMDEYGN IHDLFNGLDDLNQGLIKAVGDPEKRFNEDALRMMRAVRFMSQLKFSLEEKTRQAICDHHE LLSKISVERIREEFVKMCVGPHARSAFQVFLDTQLSEEVPDFRGKKEQLSVFPSLTFSPS TEASVWAIIAILLKLPNEQIPAFMRDWKNSNQMARNVEEIVFFFDLLSDHSPSDYELFLA GQDTVMSACDVARILGQPVNSEAMIDRYVALPIKNNKELVIDGSTLIEWGIKPGPSLGEM LAKITEAVVDGKVANEEEAIKNFIAE >gi|297148814|gb|ACGQ02000002.1| GENE 319 377601 - 378506 687 301 aa, chain + ## HITS:1 COG:lin2023 KEGG:ns NR:ns ## COG: lin2023 COG1284 # Protein_GI_number: 16801089 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 18 298 10 288 288 229 43.0 6e-60 MKVTNLKFKITPSFIIELIMIALGSAIYGLSINMISIPNQLTDGGLSGISLLLFHWWKVN LGFSTLILNIPLILIGFRFLGKKLMIETLWGTICLSFFLNFWRLIPIINQLNLEHDLLLA AISAGLLSGLGLGIVFRYNGTTGGSDIIARILQQEKDIKSGKTFFIIDVIVLVLSLSYID IRHIMYTLIASYIATTLIDIVQQGGNKAKAVFIISDKYEEIAKMIDLELDRGYSFLNGEG GYDRSQKHIIYCIVANYEIQAVKAIVLREDPKAFMTIFDANEALGEGMSYNRKKRNFFIR R >gi|297148814|gb|ACGQ02000002.1| GENE 320 379556 - 380926 1504 456 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 4 448 2 442 454 218 33.0 2e-56 MQEKIVIIGASHGGHEAAIELLDKYQGLDVTIYEAGDFVSFMSCGMKLFLEQKTTGINDV RNFAPEDLEARGGKVVSGHEVVEVNPQSKQITVKNIKNGELEQVHYDKLIISSGVNAANL PVPGNDLANIYLMRGYEAAQKIDAAKNNPNIKNVVVIGAGNGINAVEVMEKYGKNVTLID AGKRPLENYLPEEFTNVFASEMEKHHVNLMMETKVESFTGENGQVSKVVTDKGEVAADLV IIAAGIKPATDYLDGAIELNKMGYIQVDDYFRTSAADVYAIGDAIWPFSIPANTYAPNPS AVAARHEAQYLVDHLFEAKPSRPFPGLVGAQVLEVFDAHAAITGLNLRAMNFLKIDAKIS IYKDRIRPAYIPEDHNTKVLTYLIYNKASHQILGGGVLGGPAQVPLTNVLSLAIRQKLTL EDLVEQDFFFSPSYDRQWNLLNLAAKDALEYKRFDR >gi|297148814|gb|ACGQ02000002.1| GENE 321 381159 - 382220 991 353 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851145|ref|ZP_05556534.1| ## NR: gi|256851145|ref|ZP_05556534.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 353 1 353 353 642 100.0 0 MDMNKGNVLPEGNDLLNGLFQVQDYLNKINDRVTNVMNLEKDRIELQQSNLKKKITTEEI TSDMGKLMQVFLVCLFFGYVFTSFVYPMVNPKTTWSGVFWGIVIGAVSIGIPLVLLQDKY KNKFKKTKIGFLIFDFLFEFALFFSYPNVLIWVVAILGHFVGLIVVYLYCNNYNSKVASE NAKLTAQDEDHNQAARARNAKIDQQCAILSTEITAIKNEMQEKTASWYPVDYYSLDSVAH FISILKNHEAENIKEMVKVFKEDAYRDNVLNDQMVMKQQLDDSLAAQRENLQNQQLLAQR QQEMVQLQKKSNMIQMANAIASMVTARNTSQLKDSAKNIADNTKKIVDNTTWY >gi|297148814|gb|ACGQ02000002.1| GENE 322 382258 - 385989 4722 1243 aa, chain - ## HITS:1 COG:no KEGG:LJ0437 NR:ns ## KEGG: LJ0437 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 81 854 27 838 1000 101 24.0 2e-19 MKTNKLITSATIAVALLMASKTTTVKADVKTTDNNETQTKSTSSVDTATANVNLAQANEK LAQASADTAVDKANQTAAALEKAKAANDEANKQDAEDNATIKEAPDKITSAKSELAKAEE TKAAESAKTPELTQNADELKERLNKAQAEDDKANAQFDKTWANLRSKQAAYDTSYQEKAD KAQETADAAQKAAEEATGVVNTKKQAVSQAQAGVDAAQTKVNEANAELEKSNQAQKDAEA KLASAKAAVATAQAENDKAQAAVKTAQAGTQTAQAALDQAKSDKTAKDDAVSAAQQAFDD AQKAAEEATNRASDAAKKLAEANDAVATAQTNFDNAQAAVNDLQSKLQAAKTDLETAKMR YYEASRYFENTLTLSDEQVNVIKKYTQLAQASDDPLAYAVKAVNSDQFKSDMVPAIHISR NMNDYKSNDYDKLRIVNVMNLTHEQKLELAQFAADLLNQVRAQVGSKPVTVSETFMEAAD KIAAGYTADHRIISDDKGHDVPVITSVMGQYGFKDGGQYYEDMTNWYLGDQPKSDEQGNF YPLSDDEYEKYNKYEDGQWVFTGNYNISMDSLKSYVYYNILELVMTPDEWHHMSDLLGVL YQTDHANSEYFGISFNNLGTAEVSTHVITAPNSYLEHPEMFQAKLVSPIDKAQAKRDAAA ANEDINNETAKVTDLNAQLTVANDKMKALTSALTAAQAVAQKSSDDKANADQATNAAKSA METANDNLNAAKASQSEAGDHLTAAQTVLDNAQRSLSGAVTTANDAARTLSEAEKTAAES ETNAKSAQTQAQKASKAQADAQTALTTAQKTLDHANDEMATANAALTAANAKLADASRTL NDAKTALANYDAKHAQDKVALKEAQDAHQASIQASAITGFALNAARQFFEQADTALTANK KVVAKAQATIDNMNAQINAVNKAVSDAKARLESNKSVHDAYAIATVNNQDAQKALEKAQA DLAAAKQVLAEAQAKLTEAKKSEEAKKAEEAKPSEDSKKSEEAKPSEDSKKSDDTKPSED AKKSDDTKSSEDSKKSEEAKPSEDSKKSEEAKPSEDSKKSDDTKSSEDSKKSDDTKPSED SKKSEEAKPSEDSKKSEEAKPSEDSKKSEEAKPSEDAKKSDDTKPSEDSKKSDDTKSSED AKKSEEVKATEEPADIKAPEVKPVVIAPAQEVITSQKKVAVSTDKLTSAALTQRTVKMPI KSRVEEHYGKQLPQTGDNENVLAAMGSILAGLGMFVGFKRKKN >gi|297148814|gb|ACGQ02000002.1| GENE 323 386188 - 388869 3424 893 aa, chain - ## HITS:1 COG:no KEGG:LJ1313 NR:ns ## KEGG: LJ1313 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 539 822 47 313 509 88 27.0 1e-15 MAHKHIEQSVKECQRFSIRKLSIGAASVLLATVAFMSTGVSSQVHAAETSEAATTQASSD AKLSDAKTKLQAALDSAKALKVTDEQKKQAGLDKAITDAEAAVKGSDINVVNTKLDELNK AVDVVKAEMAKATTTKADTSTAKADKETSTSSSTSTSASESKTSASESTSSSAAKATSDK SKESSSTEAKDEKSSESEEYPGPDDLPKGYHFMAVFVKDKDSGQFVFYSNSSDWSTKEEI ALKDFGTEPGMIYGINYLKTYLNYLGYNLDDSPENKHVLETSIFGKTDSAELTASKMSSD ELKNKKLITVKFVDENDKTPITKPLKIYVDKDAKSISGSVVDVINEHYLLPMFLTAQDEG LKIPISTHMPISNESNRTGGKGAAISADGVVTLHQSGGMVVEKKDHKKTEAKENQPEKPK KISKEESFAGIAYVPEFAFNPFWKLPLVDGEGNYTGKNIATNSNWKILAKKTIDGEVYYR LGTDKQWISADYVTVKSADQAKTETPAKTETKETPAKEAASQTKDSKEVAYTGVVYAPVI NNNRGWKIALLDGEGNYTGQFISTDSNWKIFAKKTMNGEDYYRLGTDKQWVPAKFVTVKS AQPVKTETPAKTETKETPAKETATQTKDSKEEAVSGVAYAPVINNNAGWMIALLDGEGNY TGKYIPTNSNWKVLAKKTVNGEDYYRLGTDKQWVPGKFLEVKLTESAKSTTPTKTESKET PATQTTAAKEEAVSGVAYAPVINNNPGWMIALLDGEGNYTGKYIPTNSNWKVYAKKTING TTYYRLGTDKQWVPERFLQFKASETAKTVAPTKSETPSSTEEAISGIAHAPVINNNPGWM IALLDGEGNYTGKYISTNSNWKVFARKTINGRTYYRLGTDQQWAPASYLNLIK >gi|297148814|gb|ACGQ02000002.1| GENE 324 388855 - 389061 133 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFMCHNLFSSKNNDFNLPSRQGLFYPPENISSIYINYFKIIYAHARNIFSQYILKIIYIS AILIDFNL >gi|297148814|gb|ACGQ02000002.1| GENE 325 389194 - 390384 1328 396 aa, chain - ## HITS:1 COG:BH2510 KEGG:ns NR:ns ## COG: BH2510 COG0452 # Protein_GI_number: 15615073 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Bacillus halodurans # 3 396 6 398 404 294 41.0 2e-79 MARIAVYLTGGIATYKAVSVVRNLQKLGHQVRVVMTKNAEKFVSSQTLAALTKEEVLDDL WGKENEAKIPHIELADWSELALVVPATADFLAKMAWGLADDAASTTILASNCPKIVVPAM NSHMLANPAVKRNLTQLKADGVVILEPKVGMLAEGYQGRGRMPEPDEITKFVCDSLSTPN TLQGKRVIVTAGGTREAVDPVRYLGNRSSGKMGIAIADEFAKAGAQVDLVVGNIDIAVPN NELIKIHQVSSTEDMLNQVEQLFDACDCLVMVAAPADYKIKNNFNQKIKKKPGQTNLILE LTQTPDILKTMGKKKDRQIVVGFAAETENLLVNAQTKLERKHVDMIVANDVSTGVFGSDK NQVYILQKGLEPVSWPEMTKKEIAKRLVSLISEKMK >gi|297148814|gb|ACGQ02000002.1| GENE 326 390372 - 391616 842 414 aa, chain - ## HITS:1 COG:lin2791 KEGG:ns NR:ns ## COG: lin2791 COG1409 # Protein_GI_number: 16801852 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Listeria innocua # 18 363 46 402 443 160 32.0 3e-39 MLKNLLTQKENPKIWVISDTHLIANELHDKGWAFQKMQNTSVGKDLHYQQKALLAFTRKV LKEKPDVVVVTGDITFNGERLSMQRFAEIFAPLRRHGIKLLVLPGNHDIYDGWARKFKDD VQYRTDQVSPQDFKEIFYDSSYRYAAREDGSSLAYSVNLSPNYRLILADSNIYPMEYSLT HPHTHGRIDDEELAFIEGQIIEAESNHQHVLFFMHHNLYRHNAVIYHNFVLDNASQVKRL FNKYNVQAVFSGHIHAQSIKKAPDCSAYEVVTSCFSSTDQGYGEISLNDKQLCYKRYSFN MDDYLAPAEKHGHLNNYRQYLWDLFEQNNRYHLRYLDNMELADEEKAKIARFLGDMHWDY FVGKGGMSKEQIINSEEYRRSIEVRPKLKGYIDSLIVDSDNWNLKINWKNKWLE >gi|297148814|gb|ACGQ02000002.1| GENE 327 391636 - 392763 1309 375 aa, chain - ## HITS:1 COG:SP0373 KEGG:ns NR:ns ## COG: SP0373 COG0116 # Protein_GI_number: 15900296 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Streptococcus pneumoniae TIGR4 # 1 374 1 378 385 370 48.0 1e-102 MTEKYTLYATMGAGFESTVSKELQKLGYQTRNENGRVFFEGGQEDIVKTNLWLRSADRVK ILLKEFKAVSFEQLYDEVYDYDWALLLPVDAAFPVQGRAVRSKLHSEPDVQSIVKKAIVD KMVKQYHRRGFLPETGNAFPLDIHIYKDVARLSLDTTGASLFKRGYRVEHGGAPLKETFA AGLLELTPFNGTHPLVDPMCGSGTLPIEAALLAKNIAPGMKREFSFDGFDWFDKKLHQAG VEQAQAQIKPLESTIWASDIDQSVLEYAKLNAHNAGVLQDIKFKQVAVKDFKTDLENGII ISNPPYGKRLKDRDGAHKLYEEMGQVLGSYKDFSQYYLTSDPDFEKYFGQKATKKRKLFN GNLRVDFYQFWANKR >gi|297148814|gb|ACGQ02000002.1| GENE 328 393235 - 393660 500 141 aa, chain - ## HITS:1 COG:no KEGG:Ldb1015 NR:ns ## KEGG: Ldb1015 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 140 1 151 154 133 54.0 2e-30 MADLKDIKLSSQDILKKQFAHKMKGYDQEEVDKFLDQIISDYETYNSIIEDLYGKIGKLQ RELLESQRTAKEGAEVATQTVAPAPADDVKTYTPSGFKASPVQNQVPTNEISTNMELIQR VSTLERKVYNLEQRVFGMQNQ >gi|297148814|gb|ACGQ02000002.1| GENE 329 393760 - 394326 598 188 aa, chain - ## HITS:1 COG:lin2003 KEGG:ns NR:ns ## COG: lin2003 COG4474 # Protein_GI_number: 16801069 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 177 1 176 181 125 34.0 4e-29 MKRVWITGYRSYELGVFNQKDPKIKVIKYCLKNHLRSLLENGELDWVISGAQLGVEQWAL EATIELQKDYPVNVSMMVPYQEFSNRWNEDNQNHFLSLKEQVDFFGSTSNSPYQSPVQLR NYQNFMVQHTDSAIMIYDPEHPGKSKYDFELIQKYQQKRDYDLDLIDFYSLEDAANEYAE AHRPDYFN >gi|297148814|gb|ACGQ02000002.1| GENE 330 394598 - 395110 308 170 aa, chain + ## HITS:1 COG:SA1282 KEGG:ns NR:ns ## COG: SA1282 COG3331 # Protein_GI_number: 15927030 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Staphylococcus aureus N315 # 1 169 34 205 208 182 55.0 3e-46 MTLEEQINESNKYYLEKNLCVVHKKPTPIQIVKVDYPKRSKAVIREAYFRQASTTDYNGV YKGYYLDFEAKETKNHRSFPLKNFHDHQIIHLSRCLKQNGICFTIIRFSSLGRYFIVPAS FVINAYKDPDKSSITLQEIETVSYEIQSGFRPTLPYLEAVDKFIADRSKS >gi|297148814|gb|ACGQ02000002.1| GENE 331 395111 - 397447 2886 778 aa, chain + ## HITS:1 COG:lin2006 KEGG:ns NR:ns ## COG: lin2006 COG0744 # Protein_GI_number: 16801072 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 7 687 8 687 826 465 42.0 1e-130 MAENNHRSANNTAPKNSRMANLHHDNSKPKRRLWLQILKWFSIVVLLILVSGVGLFAYYA KDAPSISQDQLQSGGSSSFYTSDGKFLLSLGSEKRTYVKNSDIPQTLKDAVVSVEDKRFY QENLGIDPIRILGSIVSNAKSSGIAAGGSSITQQLVKLTVFSTAASQRTLKRKAQEAWLA IKVEHDYTKNQILEYYINKVYMNYGVYGMGTAADYYYGKSLKDLDLAQTALIAGMPNAPV AYDPYTYPKAAKYRRDIVLNAMYANGKITKAQLKAAKAESITQGLKTQQTSSESSIRKID DPYIKEAITEVKSKGYDPYNDNLKITLNIDQDAQNKLYELANGSTIPFSSSKMQVGATII NPSNGHVVAIIGGRNLPSVQLGLDRAVQTGRSTGSSIKPVLDYAPAIEYLNWSTAHYLED TKYVYPGTNIQLYDWDNKYMGKMTMRYALEQSRNVPAVKTLAKVGMKKASLFARKMNISV GSNQGLSVAIGANASSLQMAGAYAAFANEGVYYKPQFVSQIETADGVVHSYSSTGTRVMK KSTAYMITDMLKGVLTEGSGTNARTGLYEAGKTGTVKYSDDELVKYPSYASTPKDAWFVG YTKKYSIGVWTGYDNLSDGTITGQGQYASQYLYKYMMKYLMSDKENSNWTKPSNVVRKRI VKGSDPLEVTSSKSNSTSELFLRGHTPDGSNDDSDESSSSTSSSSSSKDNEVVTNRSSSS SSSSSSSSQGREDGSTSNSSSSQASSGGNPNNNQGTTTNNQTNNNNTAGQGQNNGGNN >gi|297148814|gb|ACGQ02000002.1| GENE 332 397643 - 398452 938 269 aa, chain - ## HITS:1 COG:alr1528 KEGG:ns NR:ns ## COG: alr1528 COG2746 # Protein_GI_number: 17229020 # Func_class: V Defense mechanisms # Function: Aminoglycoside N3'-acetyltransferase # Organism: Nostoc sp. PCC 7120 # 28 262 33 264 274 152 36.0 9e-37 MTEKIIDTVTSMQDIKNLLIPHVAKTDSCIVHTSLSAFGYIPGGERIIVEALKDIFSEGN IVMAAQTADLSDPAEWGEPPATEQAQMIIKENMLPFDKKETPIHYIGKTPEYFRTSDGVK RTNHPLYSMCAWGRDADHICRNRKYDMPFDWDSPLGDLYKLDAKVIMLGTDFESCTALHL ADSTIDRPLLEETAPVKNEKGESEWITFKNVDELDKYDDFNEFGTYFEEHYPEAIVKIQI YKGFVRIIQMRQLVDSAQIYYRKKDLQNK >gi|297148814|gb|ACGQ02000002.1| GENE 333 398466 - 399119 689 217 aa, chain - ## HITS:1 COG:SPy0929 KEGG:ns NR:ns ## COG: SPy0929 COG0177 # Protein_GI_number: 15674949 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Streptococcus pyogenes M1 GAS # 23 206 10 193 218 194 54.0 9e-50 MTTAKNKQVSHDEQLLNDEEALKVLNRILAMYPDAKGELNWDNVFHLVCAVAISAQTTDK MVNRVTPKLFSDYPTPADMAQADIKDLEADISKIGLFRSKAKHLKEMAQILVENFDGEVP KDKKLLMTLPGVGEKTANVVLAEAYGVPAIAVDTHVARISKKFKIVPENAKPHEIEKRLE EILPKEQWIKTHHAMIFFGRYTMPARAKDPNPYNYLK >gi|297148814|gb|ACGQ02000002.1| GENE 334 399119 - 399754 656 211 aa, chain - ## HITS:1 COG:lin2009 KEGG:ns NR:ns ## COG: lin2009 COG3935 # Protein_GI_number: 16801075 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Listeria innocua # 11 203 13 198 239 117 35.0 1e-26 MKSFFNYRSFGFTTLTNALLASYSKLGLSDSAFLVIVQLEGFAQAKNYLPNENEIAARTN MTAGTVSTILQNLLENGYLELVQNRDKQGLINNEYSLEPLYIKLDQYLQDHYVETKANIN KQEINTSTNPVNELARQFEIEFGRLLSPIEREEISAWLTVDHYDPEVIKLALREAILSQV YNFKYVDRILLNWQKMGLKTPSDVTTYLGDR >gi|297148814|gb|ACGQ02000002.1| GENE 335 399822 - 401120 1500 432 aa, chain - ## HITS:1 COG:lin2010 KEGG:ns NR:ns ## COG: lin2010 COG0017 # Protein_GI_number: 16801076 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Listeria innocua # 5 432 3 430 430 556 61.0 1e-158 MTDLISIKQAPEYVGKEVKMHVWLTDKRSSGKIMFLQLRDGTAFFQGVLLKKDVSEEKFD LAKSLRQEASFYITGVINEDERSHFGYEIKISDLELVSNTEDYPIGNKEHGIDFLLDHRH LWLRSRRPFAIMQIRNEMINATYDFFKKEGFIKFDAPILMNSAPEGTTELFHIEYFDNDA YLSQSGQLYAEVGAEAFGKVFTFGPTFRAEKSKTRRHLTEFWMIEPEMAWTHQDESLDVQ ERYISYLVKRVIENCEYELNILGRDVEKLRPAAEGNYTRLKYDDAVKMLQDAGRDFKWGD DFGAPDEAYISEQFDRPVFIMNYPTSIKPFYMKKDPENPKEYLCADMLAPEGYGEIVGGS EREENFDVLKAQIEEAGLNLDNYEWYLDLRRYGSVPHSGFGLGFERAITWICHLDHLREA IPFPRMINRMEP >gi|297148814|gb|ACGQ02000002.1| GENE 336 401198 - 401689 683 163 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01170 NR:ns ## KEGG: LCRIS_01170 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 9 163 11 165 165 110 38.0 2e-23 MYLGNRIWKYVFAAVAAVVVLIIAFYTVLGLAAHGQAAGKVQAANRAVKYTAIKKVTAYY HLNRGVNSYAVKGQTAKGKTAYYIYLTKQKKGHYLLAKKGYSASQVTKKFSKQHSDTKAN GLNLGWYNNEAVWEIAYRKYNGKYGYAIYSFRTEKELSFIDNV >gi|297148814|gb|ACGQ02000002.1| GENE 337 401673 - 404483 2366 936 aa, chain - ## HITS:1 COG:BH1691_2 KEGG:ns NR:ns ## COG: BH1691_2 COG1199 # Protein_GI_number: 15614254 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus halodurans # 258 909 37 696 716 226 29.0 2e-58 MSQALSDQVFAVVDLETTGTRRGQDRIIQFGCAIIKNRQIIKTYSFLINPKADIPQAVQN LTGIKPADVVNQPVFKNFATQIEDILQDTVFVAHNINFDLPFLNAELAANGFPKLRNRAI DTVELSKIAFPTLPSYRLSDLTHSLNLKHTNPHQADSDAYATASLLLKILDKLESLPQST LNTLTSLSKGLLRDTQFIFKEISEFTRQEKRPLSKKYLQIHSLVLKKQEHLLHSETAKKA IFPKTDEEKKRLFKGKIEFRPAQVNLINKLHAFFNNERKAILVEAPSGTGKSFSYLFSCF YNLYRGQKLVIATPTMILQNQLIEKDLPLALQVSGLDLSSQVVKASRHYLDLDGFEQSLK QKTDNQETLILKMKILIWLTETSTGDLDELHTTNFAAPYFAQVQHPGDARVGTVFAPYDF WNLARYRQEQADILITNQAYLANHYQDSIWGQNPYLIVDEAHRFSDIVMNSRNNSLQFES FWGMLSHLRNIILFGEDNIAQDYKNSPVITDLATKADGVIGDVVHAINDLQVYLYDKKDN AIARKILPNGHLQVAVESEAFTDLDKFLQLLTNLQNKIEEIRTIVNRLLGVLYQISDSFL PREEARLNELSEQVDLLDYYSEQAYLLSDLLNDHEQFSNCGLVLDVTNPADSLATNLNWM LLDSKFELEKIYSGFKKIVFISATLSNNGDFSFSKKNLSLTKVDCAEVYSNYNFKLEKQV LALSLTDPAAPSYPSDESYGDFVAPLLLNSIRKQDKVLVLFTNLEAISDVYSAIVTRPEF KDFELLAQGVTGSNEKIVKRFNVAKRAIILGANSFWEGVDFGQTKVNLVIATKLPFESPD QIEVKLRQTNLARQGIDVFNEDSLPRAILRLKQGMGRLIRSPKDSGIFALLDQRIWTSNY GPEFLKSLPVQLVQVNLDELEENIRKGYDKDNVSGK >gi|297148814|gb|ACGQ02000002.1| GENE 338 404566 - 408126 3079 1186 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 4 1183 11 1230 1232 575 32.0 1e-163 MVNYTKEQEAAINTRGKDILVSASAGSGKTMVLAERVIKLIKNGTSLDNLLVITFTKAAA NEMKERIKRVLNDEIAKNNSRKLKRELLRAEVANISTIDSFCLDVVHRFYYVIGLDPSFS VLTDETQAALLKEKALRELEKKAFASPDNPYRVFYDNFAGDRDANGARELLLDLYNYAMA RPDYDLWLDGLAKDYEFADDLSEAPFFVKAIKPYLSKILLEMSNKVDKILSDPFNEATEL EKIIKDFSGFSKRLTRVEASLESDTFDQIRASLQNCQFTENPRKSSKWDEDLLDRYASLS QTRAELKDQIKSLFAAFFVADNEEQTAVMKQSSSIIKAVCLAEKELIASFNSLKRKQNLL DYSDMEQLAYQILTSDTTAGHLARQFYQNKFTEILVDEYQDINKLQERIIQLMKCEHNNL FMVGDVKQSIYGFRQADPSLFLNKYRAFAKEEAAERIVLADNFRSTKPVTKLVNKLFNPL LTPDFGGIDYQSEGQLKFGASYYPDDLPTASELLFYDKSEGSEESNQIQLVINRIKQLID EGFEVFDVKTGLKRPIEFSDIAILTRSRSQNLDLLKQFAQNNIPLFVSDVANYFQTFELT IIMNYLKIVDNPDQDIPLAAVLRSPIFNFKETDLAKIRIKSPNTSFYSALINYVSENDEL SKRIKDFLNQLADLRDFALNHRISETIWSIYARTSLLEIVTSLPNGKQRRINLENLYERA NSYESAGFKGLYQFINFINRMRKNQKDLAQPLLSKEAENSVQLMTIHASKGLEFPIVFYL GLEHQFQKSDLSGNYIISGDSCGITVVRSDWRIDSLVKAMGNVTKQKQLLEEEARIMYVA VTRARQKLILVTNFKEFSKDTENMGASLANDGSLTLTSELAAQKPADLLLPQLALNRQFI NQVTDLRPEVESKQDFLVVTGDAEAVELVEKQDVNEEGKVSEFIVKNVKKLFEATYPFQD ATTTTAYQSVSELKKAFNDPIDDELANSRFIKSANRYLQDIDTRPGFLFEDGFTGAEIGT AMHLILQFFDYQGKTSVEAEIEKLVQSGKLNPKIVPHLPITEISWFVNSNFAKKFWNDPT KLKREVSFSSLLPAADVFKPFSDPNAKILVHGTIDGYYLDDDGIILFDYKTDYVNKNQLA QSIAKIKDKYTGQLRLYERALNQLGKEKVKSKYLILLDAQEIVEVD >gi|297148814|gb|ACGQ02000002.1| GENE 339 408119 - 411574 2947 1151 aa, chain - ## HITS:1 COG:BS_addB KEGG:ns NR:ns ## COG: BS_addB COG3857 # Protein_GI_number: 16078126 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Bacillus subtilis # 36 1142 38 1158 1166 306 23.0 2e-82 MLKILTGRQSDPLHEKILAEAVNNYEQNPELETFIIVPNHIKFTTEIEAITKLAGLRRKS EASVKNLHILSFSRLAWFFLQDRPEVLKPVIDEAASSMLLEKIVTEKKNELVLFNQFSQN SGLIKQIYQSINEVSSSDFDLLDAQSHVTDEETKNKLHDLAIIKTAFDEAIVDRFITKQD FLTEMNIFLAGSNRLKDCSFYFVDFSQFNGTEQVAIELFAQKAKQVVLAFATEDGTIKAS PEAGDYDYVVQKTIKKLQRRLSFTYEQYASPVKDLTAKQRLDHYWTGDLDYDEQNKPNVQ LIKADSRYDEAYFVARTIYQQVSLNKFRYQDFLVLAPNLHEYETYLTPILRQNGIPFFND LQKEMKYHPLVIFIESLQTFLETGFESASLFSLLKTRLFIPSFYQDEAAFLRDVDELENF ALAHGINYYLWNRPLTSFVKIKRPIIALDKRNNEVERLEKLRQVVFKELNNFIEQFKKAE EVKAGVKFFFDFLVKIGLTKRLESWRKQAVDKNDLQASQEPKQIWDLLLNLLNDFLLINK PEDQFSASDFLRILISGFKEANFAQIPASLDAVSLSEMGMVQAKNYKNVFIIGASSNNLP QISNTPGFLTSENLAQISSADGDNALEDRQELANLDQDYQFGACLTLASNWVYISYPFLN TANESIEPSTYYTKLQKLGARELEQADLPKEDASDILSFTTNASASLGYLTSLLPSYQNT LLDLAKNYAPQKYTQLIQGRNFNNQPVNLGQKLAKELYGLKLTSSVSQLETYYQNSLEYF FNYGLRLKPRAENELDVIQAGNYFHQTFDYLVKYAQAHQYDLAALSDEQVLAALTEVRNQ IHQEGSYEQLLSDPFNQYLFTSLDKTVNTVAFNWKKRMAQTPFRPAYSELAFGSGNKLAG LKFKLDQTREIDLRGKIDRVDLAPYKNELLGQVIDYKSSSKNFDLALFASGISLQMVSYL DVLAKNASFFGNDSLDLLGAFYQTITKQVERLNKPDQLDANLLPKKALAQAKQRLVYSGL LVNNEDYILTADPELKEPKVSSKLYKSVRSKARGGLTLPRDRHFTEDELKLVLRYNEYLI KKAGKAILTGDLALNPYQYGQENGLKYSNYQDIFFFDAKLAENNYRKISSLDKASFMQYI KEILEKEEDNG >gi|297148814|gb|ACGQ02000002.1| GENE 340 411631 - 412545 717 304 aa, chain + ## HITS:1 COG:L7866 KEGG:ns NR:ns ## COG: L7866 COG1577 # Protein_GI_number: 15672386 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Lactococcus lactis # 6 301 10 307 310 170 34.0 3e-42 MQTSYLAHGKVILIGEHSVVYGYNALSMPIQSLNIKTTVSENNDNYHYMDTDRYHGDFFK APAEYAGLKYILQYFLNLKPSSPYLKISYRGLIPIERGLGSSATVSLGTTKALNEFFKLK LSDKEIMAITNHAETINHGKASGLDSATVNSDYLVFFNKKTGVQILKQKLNATLLIMDTG DLGNTKEAVELVKNEVTSSKKQANNLENLGNLTDQVKQAWISQDAKQVGQAFTKSQKYLA ELKVSTPKIDHLCQLAIDTGAYGAKLSGGGLGGIVIALCPNQELAQTIANKCHKLISNYW IEEI >gi|297148814|gb|ACGQ02000002.1| GENE 341 412545 - 413507 968 320 aa, chain + ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 5 310 7 316 327 227 44.0 3e-59 MKNTARAHTNIALIKYWGKKDADLRLPLMSSISMTLDAFYTDTSLLIDTEDKKFILNGQE VTGPAANRVFDYVERLQKLFNVAGNFHVISDNHVPTAAGLASSSSAFAALAASFVKAYNL SISPKGLSILARLGSGSATRSIYGGFVKWNKGTNSANSFAEVIDEKPQMDLKLLAVEISE AEKKLSSTKGMKLAQTSPFFKPWIARNDEEIAQMEAAIKSNDFTKLGQLAELSASEMHAI NLAAQPGFTYFANETLEIIKLIQELRNKGLECYYTIDAGPNVKILCQKNSCSNIKKYVKN ILPNVKIVEAGFGPGITYLD >gi|297148814|gb|ACGQ02000002.1| GENE 342 413546 - 414634 955 362 aa, chain + ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 354 1 355 358 274 41.0 2e-73 MITEKAPGKLYIAGEYAVLEQNCPAIIVALNQFVRVSISAAVGNTGIIHSKQYSQDSIHW RRQGNKMVIDNRDNPFEYILAAIRFTEQYLLENGISLKVYDLHVNSDLDSKDGRKYGLGS SAAVTVATVKAILAFYGIERKHDLVYKLAAISHYSVQGNGSAGDIAASVYGGWLAYQTFD KKWLKRELTTKKLSEVLSEAWPGLQVQLLTPPAGMELVIGWSQKPASTSRLVDETNAQKE NFQREYEAFLANSRQCVLKMIAGFKEQNINLIQEQIRVNRKLLAHFAKLNHIAIEIPRLT ELIEIAEKLGFAAKTSGAGNGDCGIVITNHSGKISDLKAAWRKVGILPLDFRVHVLKQTK EK >gi|297148814|gb|ACGQ02000002.1| GENE 343 414634 - 415656 1011 340 aa, chain + ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 6 317 8 323 349 218 38.0 1e-56 MSNHSKRKEEHLALAKKYFTIKDNDFDRIELVRPALPESRVSSAAIACEILGKKVKAPFY INAMTGGSEKSKEINRAIGKASRIGQIPFATGSSSILAKEKDQLASFYVAREENPDGLFF ANVNPNTPANTAKNIVQELQADALQIHINTVQELAMPEGDRDFVWIDKLKAIRDVVDVPV IIKEVGFGFDKASIELLQKNNFNLIDLGGAGGTNFAQIENARSSHPLPYLDELGLSTVKS ALIAEECGIDFFASGGIRNALDILKCLVLGAKSVGIANLFLQAYENSGEDGLVETVLRFE DELAGLFALFGINNVNEAKKIKYALTKGLWKELIQIIVDD >gi|297148814|gb|ACGQ02000002.1| GENE 344 415692 - 415787 92 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MITLYFMSVDLLEDNSTEWVYKITTDYQEGH >gi|297148814|gb|ACGQ02000002.1| GENE 345 416125 - 418470 1963 781 aa, chain - ## HITS:1 COG:SPy1246_1 KEGG:ns NR:ns ## COG: SPy1246_1 COG0144 # Protein_GI_number: 15675206 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pyogenes M1 GAS # 324 613 2 281 297 258 47.0 2e-68 MKIKKIFLGIFLFACFLVAGVLVSNIQSISADQVLTASGLSSYSRNLKTNSKVEIRTLLK YLTKKYPNEKITLELNNKYDQDQVLIWSNYQNELLPVAKGRYFNPEEFEGVVSFGIVSPT SNIQLLNTQDNKYIVLNNRYISVVGTLKEVSDNIQTKYYLTTGINQGNSKARLNNFDIII DTPSNRVVQGVSKYLNGQVTFSELVSTHRRTHFIRAMAFSILLGIIVLFAGLVAGACAII NHIHSQMDKIERPLKKYFIASKLGRFVFINILMGLAAYFFLTWRLYFTSLSYLIILFVLM MTLNVVIYMLVVFFLNRKEKLDKLVLPKEFKDKYQKLLAKKADSFFTALEAEPKKAFRLN PLKADYQEVSYDLSKPVDGVADAYYGEISGRDIEWVSGYVYSQDPSAMYPAEALGVKPGQ KVLDLCAAPGGKSTALLSALKNKGLLVANEISTSRAKNLRENIERWGADNCLVTNEDTSH LAQKFPRFFDAILVDAPCSGEGMFRKNHDAVTYWSQEYVLECSNRQKEILNEAVKMLKPG GSLLYSTCTYAPEEDEEICAYLVNELGFKLVETKVSVASQGVPAWGENLDGIEYARRFWP EDEIGEGQFLAKFILPEINNEEAVTNSKQKSKKRGKKANKRLEVFTKAEKELVQELLADF NLPNNFDFSKAVKSKDHVYIPAVEDVSQIKVLNNGLELGVLKKGRFEPSQQLAQYLGQVR QEKVVELQNQAEFEKYLHGETVRTEAKLKGFVLISYQDKIFSFGKVTGQVVKNFYPKGLR I >gi|297148814|gb|ACGQ02000002.1| GENE 346 418460 - 419182 478 240 aa, chain - ## HITS:1 COG:no KEGG:lhv_1281 NR:ns ## KEGG: lhv_1281 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 240 1 249 250 219 45.0 6e-56 MTDFLTKLIKIDNELNIPRLHQEVCEVKRVCSVLDKKEVPNCQIMNLGPITAQKSAAKKI QVANNLLNSFRQYLSLHYGLWSLPNVQTARIIKEKYNITSAVEVMAGNAAWSKALSMAGV KVYASDNLVWSKTSKTGGDLFYPVENLDASSAIIKYQNCDLIICSWAPNFGHADIDLIKV WKKLEHRPKLLFVGEEFGVTNSEEFWQTVSFIKKPELASVNASFSSFDFIEERFFEIDED >gi|297148814|gb|ACGQ02000002.1| GENE 347 419269 - 419847 670 192 aa, chain + ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 30 180 26 180 188 137 46.0 9e-33 MGKNISNKAAENESLGKWLLQVFVMAAILLGIYYLIFSFVLSNETVSGPSMQPTFENGDR IIALRHTSLKRGDIVILNAPDEPGALYIKRIVGMPGDSITYKNDQLYLNGKKYSEPYLTE GKKLYSGGQLYTENFSLKSKFGVNKVPSGEYFVMGDHRNVSKDSRYFGFVKRSAIVGKVI FRYWPLTKWSTF >gi|297148814|gb|ACGQ02000002.1| GENE 348 419918 - 420103 224 61 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01185 NR:ns ## KEGG: LCRIS_01185 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 3 59 4 60 62 77 75.0 1e-13 MNQEELSDVIITYQVKHHVNDTELAFASHLSVEKIHAMKTGDGSFTGEEINQILEYIQSQ D >gi|297148814|gb|ACGQ02000002.1| GENE 349 420153 - 420770 501 205 aa, chain - ## HITS:1 COG:SP0288 KEGG:ns NR:ns ## COG: SP0288 COG1266 # Protein_GI_number: 15900222 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pneumoniae TIGR4 # 24 196 44 212 230 61 29.0 1e-09 MSSYVIPKSLNSNKEMIGKYHFVLYVATIALVMLVYHIYKKQLEQENEWHFNEKPHFKWS KLGYSGLAFVVMIAAQVLINMFLSSSSNSANQKAIDQLAKGTDWHFIVFIIFLAPMFEEI ILRGQFFNIAFTKENKLNYWLGIVINGLFFAWLHDPNFSIHIITYWVMGAILATTYLNTK DLRYSFVTHMLNNTIAALPLIFGMH >gi|297148814|gb|ACGQ02000002.1| GENE 350 420900 - 421658 527 252 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851174|ref|ZP_05556563.1| ## NR: gi|256851174|ref|ZP_05556563.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 252 1 252 252 385 100.0 1e-105 MLALTDSLFQTKKNQAKITLLGYFLISLILAVFLITGRAWSFVDFSLVPEDKGLPLVMSF SSTLYKFDLLFFVWCIYYFAKDLRKQTWQLVPLSSTKIFTAQWLSTLLACAYLFIGQLLL TFISYVVSYLWASNQVLNGLRLLFDAKFEFLNDLVFLTFFCLAWLLFTALVEICKYGIIS LLPFSGNKIFENIIEIILVIIGLIIAINGFNFMFFNVGTTEEAGTIFMIITSVILWLIVQ PLFNRIGESKAE >gi|297148814|gb|ACGQ02000002.1| GENE 351 421673 - 422470 594 265 aa, chain - ## HITS:1 COG:no KEGG:LBA1187 NR:ns ## KEGG: LBA1187 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 263 1 276 276 70 26.0 4e-11 MTSFSTVFKLLQAKKAKKILMIYLIQLAAIMAIGTYLYLVNAKEFQSIFVSYEVIALTTS FFALLISWCILFIDEIKMYESQTWQLLPISSKKFFLANILTTYVTLFYMALLDLGTCAIL ISVAFAASKPELKDISVGKTLGQLPIGEIALYGLGIALLIALGLISFSLMINFLSFSSKT IVNLLPGFKSKKLVGLLRFIFAIVLYAILTYFINTFSNVFEKGIIDRQVNLLVLWLSVAE TGIFVLIGSIVDTWIYQKFFEAKAV >gi|297148814|gb|ACGQ02000002.1| GENE 352 422485 - 423297 594 270 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851176|ref|ZP_05556565.1| ## NR: gi|256851176|ref|ZP_05556565.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 270 1 270 270 380 100.0 1e-104 MTSFSKLFKVMQLPKLKIASWIYLVQLVGMIAIGLYFQFSNSVRLPYESAFLAEAITLVL AGLFLYFYLLNKEIKSYKSQTWQLMPVSSIKLYLTNQLTTYLAIALFLVFQVINFGLILG AFAVSYPINFSEISKALNNPTSTSVLGQMAVYMISLGCLFVLSAISFMVIIIFLVMVSQV IVNLLPGFKSKNLVNLVRIIIGIIGYLIIGNVSSFAFESLLKIKDNPLAALSSSGLSALW TSNGISLLFILVITAVNLYLLKRFFEAKAN >gi|297148814|gb|ACGQ02000002.1| GENE 353 423298 - 423999 190 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 210 1 219 305 77 26 1e-12 MNKALEIQNLTYKKNQKVILDNINLDLAQGKIVALLGENGAGKTTLMRCIAGVAKNWSGS IKVAGKSGEAEKKAKLAFTDKLTGFSDSTKIKHVIKFYETIYSDFDLEEFTKLREFMKLS PDMRLGQLSRGMREKLVIALTFARKADLYLLDEPFSGIDPMARKKIINSIILWKDDNATI LISDHFVNEIATLLDEVIILKDNRILTHQSADQIRSENTSIESFYQAFYEGEE >gi|297148814|gb|ACGQ02000002.1| GENE 354 423999 - 424367 412 122 aa, chain - ## HITS:1 COG:SPy1285 KEGG:ns NR:ns ## COG: SPy1285 COG1725 # Protein_GI_number: 15675238 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 2 117 4 119 123 92 36.0 2e-19 MEFKDNVPIYIQIEQYLYRLIVQGELPAGQRIPSVRQLAVDLTVNVNTVQRALQEMNNQG ILFTKRGEGNFVTEDTALLEKTKKELLTRELDDFVENMHRLGIKNDELVPTLSEYLESLG EK >gi|297148814|gb|ACGQ02000002.1| GENE 355 424661 - 425899 1786 412 aa, chain - ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 1 412 1 413 413 441 53.0 1e-123 MEYPNLLPRFLKYVKINSRSDEHADRFPSTQREVDFQMVIKKDLEELGLSDIHYNEKAGV LIAEIPSNVDYDMPVMGFLAHCDTADFNSENIKPQITENYDGESKIQLGDSEFYLDPAVF PNMKKYKGQTIISASGDTLLGGDDKCGVSELVTFAEYLLAHPEIKHGRIRLGFTPDEEIG TGAGHFDVEDFGADFAYTVDGEAPGKLDWGTFSAAQFGLDIQGVNVHPAVAKGQMINAIQ VGINFQNSLPQNEVPEQTEGREGFYHLMNFQGTVDNAHLDYIIRDFERDGLEARKNLVKS IVKKMNDEFGEERLKLKMWDQYYNMADELKKHMEVVDLARDAYKAEGLTINEDPVRGGTD GSQLTYMGLPCPNLFAGEENMHGRFEYTVLESMWKAVDVMVKMAELHAERSK >gi|297148814|gb|ACGQ02000002.1| GENE 356 425916 - 426713 967 265 aa, chain - ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 16 264 15 265 265 196 40.0 5e-50 MTKVKDIIAKLNERFPENIASSGDPVGLQIGSVDAEVTKIMTTLDVRPNVVDEAIKKGVD LIISHHPVMFRPARNLDFSDPQNAMYGKIIAHGITVYSIHTNSDKAENGSSDWQAEELGL TNIEPFAIDDDGIAVGRKGKLPKPMKAIDFAYYTKKQMNVDFVRLITANNDKIISTVGFV CGDGGKFWRDALKDNLDAYITGDVYYHVGHDMISSGLTVVDPGHYTESLFKTKCAEVLDD FKASENWPVEIVISQESTDPFQDLM >gi|297148814|gb|ACGQ02000002.1| GENE 357 426706 - 427395 702 229 aa, chain - ## HITS:1 COG:BH1379 KEGG:ns NR:ns ## COG: BH1379 COG2384 # Protein_GI_number: 15613942 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Bacillus halodurans # 2 223 6 231 235 158 42.0 6e-39 MLETRLAHLAAMVDENTRLADIGTDHAYLPIDLVKSGKIDFAIASDVAEGPLDNAKTDIL AAGLSKNIETRLGSGLETLRPEDNIQTVVIAGMGGKLMSDLLETAKVNGNLYPTLILEPN IGEPRVRKWLMENNYQIIQEEIIDTAGHIYELIKATLTTSKHSLTDKELLFGPFLLKEKT AVFTKKWTNQLAYQKQLLLNLNKAKNKDMARISEVEQRIKFIEGELEND >gi|297148814|gb|ACGQ02000002.1| GENE 358 427499 - 428593 1426 364 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 1 364 11 374 374 457 71.0 1e-128 MADMTLDKKVKELVKEVKKSKEITETDFTEKLIKPYKLEGKAVDQLVQEFEDNGISIVDA NGEPSNLALKKQKDVEKEELKDLSAPASVRMNDPVRMYLKEIGRVPLLNADEEIALAKRI QDGDEEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFNYKLGFKFS TYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMD MGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEEVL DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLK DFLD >gi|297148814|gb|ACGQ02000002.1| GENE 359 428606 - 430393 1332 595 aa, chain - ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 3 595 2 621 626 379 35.0 1e-105 MAGRIPEDFINEVRNSINIVDVISQYVSLEKRGKDYVGLCPFHQEKTPSFTVSEDKQFFK CFGCGKGGNVFSFMQYKEGLSFPEAVAEVAKMANLAMPSGYQSEMKPLSPLKKVHQDACD FFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDDTVLAK SGLFSQNENGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPETEIFNKS KVLFHLKEAKKAARTEKHLVLYEGYMDVIAAYKAGIKTGIASMGTSLTDDQVYLLKRISR NIIINYDGDEPGQHAIERASHMFETVGGFQVGVVSLPEGLDPDEYVKKYGPERYQDEVKG AITPTDFFLKRLELKYNFSNDREKLAYLDEAVKLIAPLNNPVERDLYVTKLAKKVGVSED SLKVSLLREGRKLRVAERRKKQYDFEPEEQSKTQVATLHNANPALVRLFYLFVHSEKVRN YLLDLHFLFPDESYAKLAESWLDFEETHDNATINSFYDFIPDDLKGIIDNMEMMTMPEDF SKEEVDGLLASLKKLDTQRKISNLQMQLQDAQRRQDEDQVLKTLEMIINAKRNNN >gi|297148814|gb|ACGQ02000002.1| GENE 360 430445 - 432511 2533 688 aa, chain - ## HITS:1 COG:SPy1688 KEGG:ns NR:ns ## COG: SPy1688 COG0751 # Protein_GI_number: 15675548 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 688 1 679 679 603 48.0 1e-172 MTKDYLFEIGTEEMPAHVVSRSVKQLADRTSKFLKDNGLEFKAIKTFSTPRRLTILVQDL AEKQADIDEIKKGPAKKIALDSEGNFTKAAQGFVRGQGMTTDDIYFEELKGTEYAYVHVQ KAGKLATDILLGMSDIIKAMTFPTKMRWGSNDFEFVRPIHWLVSLFGSEVVPVKILDITA GRKTMGHRFLGDSVILANSDDYEEALKGQFVIADAAERKTMIVNQIDQLVAENNWKVKLD ASLLEEVTNLVEYPTVFAGSFDESYLNIPDEVLITSMKDNQRYFEVYDQDGKLINHFISV RNGNKEFLENVISGNEKVLVARLDDAKFFYDEDKKYPLSHFVSRLDKVSFHDKIGSMAEK LVRVRIIGEYLAKKFGLSDGVIKNFDRASELYKFDLVTQMVGEFAELQGVMGMHYAELAG ENKDVALAIKEHYMPLTAEGELPTSEVGALLSVADKFDNIITFFAAGMIPTSSNDPYALR RYAYGIVRILLNQNWSLAIDKALPEMVELLDGKTKAKMPKTGQEDEEISLFIRDRIKQFL QTNNYKYDVIDAVLHSSQKDPSRILAAAKVLQAHHDSPEFKPVVESLIRIENILKKAKYK GDSVVKSDLFEDNSENELYLASQNLQAIDNFTELYEAFVSMQKVIDRYFEVNMIMAKDEA VKNNRLAQLSQINELATRLGALSKLVIK >gi|297148814|gb|ACGQ02000002.1| GENE 361 432504 - 433421 1030 305 aa, chain - ## HITS:1 COG:BS_glyQ KEGG:ns NR:ns ## COG: BS_glyQ COG0752 # Protein_GI_number: 16079581 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Bacillus subtilis # 6 293 1 288 295 449 69.0 1e-126 MTNKKLNVQDMIFKLEQFWASKGCMIMPSYDVEKGAGTMSPYTFLRAVGPEPWAACYVEP SRRPADGRYGDNPNRLFQHHQFQAVIKPAPIDIQQYYLDSLRVLGIEPLEHDIRFVEDNW ENPSMGCAGVGWEVWLDGMEVSQFTYFQVVGELDVKPTMSEITYGVERLASYIQDVNSVF DLEWGNGILYRDIFKEPEYEHSKYAFEESNQEELLQFFDTYEATAKELLGKNLVHPAYDY ILKCSHTFNLLDARGAVSVTERAGYLARIRNMAHEVAQCFVEEREKRGFPLLKSAEVEKA ESEND >gi|297148814|gb|ACGQ02000002.1| GENE 362 433665 - 434420 527 251 aa, chain - ## HITS:1 COG:lin1497 KEGG:ns NR:ns ## COG: lin1497 COG1381 # Protein_GI_number: 16800565 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Listeria innocua # 10 250 6 246 255 164 35.0 2e-40 MTREVVEVTGIVFKRQRYKEADVLAKIISKDMGIFTMLVRGALRPKSKLSASVLAFSYGN YQVLTSQKGLSPLKTYKDIKQFSNLYSDLTLNSYACYLCDLVDHAFVEYQSLGEFYNLIL VALTKLNAGQDPEIICQLVELQMLAAYGVRPQFKQCAICGEIHGPFDYSISAGGVICQKH FNEVARMHLDAKQVAMIRTLGLVNINRLGQINVKPDTKKAIRRAIDRIYFQTVDLNLKTK KFLDEMRRLEI >gi|297148814|gb|ACGQ02000002.1| GENE 363 434420 - 435328 975 302 aa, chain - ## HITS:1 COG:BS_bex KEGG:ns NR:ns ## COG: BS_bex COG1159 # Protein_GI_number: 16079583 # Func_class: R General function prediction only # Function: GTPase # Organism: Bacillus subtilis # 7 296 6 296 301 338 56.0 1e-92 MVETSKFKSGFVALIGRPNVGKSTLMNHLIGQKVVITSNKSQTTRNKISGIFTTENLQAV FVDTPGIHKPQNKLDDYMDKASLSSLNDVDLVFFMVEPEKVGKGDEYIADLLSKVKVPIF LIINKIDQVHPDSLLPVIESYQKLGKFAEIVPISATNGNNMEDLVATLYKYLPEGPQFYG SDEVTDRPEYFVVAELIREQILRLTQQEIPHATAVVVERMNQRINGKLQVEATIYVERDG QKKIIIGKGGSMLKKIGIQSRKQVEALLGEKINLHLWVKVQKNWRTDPSFLKQIGYDSKD LF >gi|297148814|gb|ACGQ02000002.1| GENE 364 435312 - 435734 544 140 aa, chain - ## HITS:1 COG:BH1366 KEGG:ns NR:ns ## COG: BH1366 COG0295 # Protein_GI_number: 15613929 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Bacillus halodurans # 4 136 2 132 132 123 45.0 9e-29 MNTEEKKLYELAVAHLNTAYAPYSKFHVSAALLTESGKITTGVNIENAAYGSTICAERVA LFNYVNQGLKDDPIKCLLITGNTSRPISPCGSCRQVMAEFMKADSKIILTNAQGDYKMTT LADILPYYFTDGDLADGRNK >gi|297148814|gb|ACGQ02000002.1| GENE 365 435734 - 436258 535 174 aa, chain - ## HITS:1 COG:SA1399 KEGG:ns NR:ns ## COG: SA1399 COG0319 # Protein_GI_number: 15927150 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 6 161 4 152 155 121 44.0 8e-28 MDAIDITYNDETNFLADTSRDWRKWIMDLLLMAKKEISKDNNLEMSINFVDEDKSHQINR DYRGKDRPTDVISFAIEDGEEGVDLSSFIEDPDFTEDIGDLFMCISVIKRHAEEYGTGFD REFGYTLVHGFLHLNGYDHIEPAEAKEMFGIQGKVLEEYGLPLYPDQLDEGRGK >gi|297148814|gb|ACGQ02000002.1| GENE 366 436258 - 437211 996 317 aa, chain - ## HITS:1 COG:lin1504 KEGG:ns NR:ns ## COG: lin1504 COG1702 # Protein_GI_number: 16800572 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Listeria innocua # 13 313 16 315 319 359 61.0 3e-99 MPQFTFTPQNPANIMSLVGVNDSNLKLLADGYDLTVADTGDGILIDSPDEKKVKLVIKVL AALEKVVNSGVSIAAPDVVSAMKMAEKGTVEFFGDLYNKILIRDAKGRPIRPKNAGQQAY IAAIQKSDIVFGIGPAGTGKTFLAVVMAVSAFKNGEVSRIILTRPAVEAGESLGFLPGDL KEKVDPYLRPIYDSLYAVLGTETTNRLMERGVIEVAPLAYMRGRTLDEAYVILDEAQNTT DAQMKMFLTRLGFNSKMIVNGDVTQVDLPGKQHSGLLDAMHILKDVDQVKFVNFTFNDVV RHPVVAKIIRAYEEEGH >gi|297148814|gb|ACGQ02000002.1| GENE 367 437232 - 437693 394 153 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 152 1 147 147 156 54 2e-36 MSLMDQLMADMKEAMKAKDKERLATIRMLKSALMYATIKDEGKLSDNELSREQELAVLGK EKKQREESIADFKKAGRDDLVAATEKELEIVESYMPKPFTEAELSQLVDETIAEVGASSK ADFGKVMKAIVPKITGRADGKEVSKLVGAALSK >gi|297148814|gb|ACGQ02000002.1| GENE 368 437764 - 437940 292 58 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 [Lactobacillus acidophilus NCFM] # 1 58 1 58 58 117 100 1e-24 MAKTIVHENESIDDALRRFKRSVSRSGTLQEYRKREFYEKPSVRRKLKSEAARKRRHY >gi|297148814|gb|ACGQ02000002.1| GENE 369 437903 - 438022 217 39 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239632784|ref|ZP_04675815.1| SSU ribosomal protein S21P [Lactobacillus jensenii 1153] # 1 39 1 39 39 88 97 7e-16 MTYKDLFGYNLTILLWQYCQEMEGGISHGQDYCSRKRVN >gi|297148814|gb|ACGQ02000002.1| GENE 370 438086 - 438910 1032 274 aa, chain + ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 9 264 10 264 270 220 43.0 3e-57 MEKSKIVNIIIISDSVGDTAFNLMKAAAAQYPDAEVNYRRYPFITTMEKLEKVFDELDSC EHMLIGYTLVNSDLQLATIKFAREHGAKPVDIFSSVVDDIHAMTGLEPSGQIGASHQLTK NYFDRISAMEFAVMYDDGKDPKGFLEADVVLLGVSRTSKTPLSLFLANKNLKVANLPLVP QTHIPDEIYQIDPKKIIGLTNDPQVLNEIRVARLKSYGLDPETSYSNMDAINKELASAQA LFTKLGCYVVNVAHRSIEETAALILRHLGIEDEM >gi|297148814|gb|ACGQ02000002.1| GENE 371 438961 - 439839 1087 292 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 1 288 24 310 313 270 46.0 2e-72 MESLEGLSRRYNLLSKISAAFLYAIAVAVALNFFWQPGHMYSSGVTGFAQLINTLSERYL PFTLTTSTLYFALNVPLFILGWFKIGKKFTIFTIIAVFLASIMMHSLPAPEWKLDPLICA IFGGVINGVGTGLALKSGISTGGLDIVGIILRKKTGQSFGSINIAINLLIVIAAGFVFGW TRSLYTALNIFINGRVIDTVYTQHQKMQVMIVTEHPKKIIDGIQEKMHRGITIIHDVEGA YGHTEKTILFTIIDRYDMYDIHNIIVACDPYAFVSVSEVAKVYGRFKEQELV >gi|297148814|gb|ACGQ02000002.1| GENE 372 439917 - 440447 672 176 aa, chain - ## HITS:1 COG:BH1448 KEGG:ns NR:ns ## COG: BH1448 COG0225 # Protein_GI_number: 15614011 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Bacillus halodurans # 2 175 4 178 179 205 56.0 4e-53 MTEYKKAIFAGGCFWCMVAPFDTLPGVKSVISGYTGGHKENPTYEEVCNHTTGHLEAVEI TYDPEKMSYEKLLSYYWQVVDPTDEMGQFQDRGETYRPVIYYSDEEEKSLAEKSKQELAD SGKFDKQIVVAIEPVQKFWPAEDYHQYFYQKNPLRYMMEEAGGRAAFIEKHWSKNN >gi|297148814|gb|ACGQ02000002.1| GENE 373 440447 - 440887 515 146 aa, chain - ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 11 143 9 143 145 186 65.0 9e-48 MDLSEKQAALKKLSKEQYEVTQHAATEYPFSGKYDDFFEEGIYVDVVSGEPLFSSLDKYN SGCGWPAFTKPIEKVVYKRDSSHNMERTEVRSKDADSHLGHVFNDGPVDQGGMRYCINSA ALRFIPKADLEKEGYGKYLALFEGAK >gi|297148814|gb|ACGQ02000002.1| GENE 374 440970 - 441182 172 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851196|ref|ZP_05556585.1| ## NR: gi|256851196|ref|ZP_05556585.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 70 1 70 70 116 100.0 5e-25 MCDYKKHIIGLGTIWNITMNIGPILVGSSVQESLIWFFWTEVVIVVGLQFLIILVYIIGF FRKKFYSKNE >gi|297148814|gb|ACGQ02000002.1| GENE 375 441207 - 441545 261 112 aa, chain - ## HITS:1 COG:no KEGG:TherJR_0530 NR:ns ## KEGG: TherJR_0530 # Name: not_defined # Def: transcriptional modulator of MazE/toxin, MazF # Organism: Thermincola_JR # Pathway: not_defined # 5 104 6 102 110 82 40.0 6e-15 MVEYPQSGSIIYINFDPSIGAEIQKRRPAVVISNDILAKTSPFAWVVPISHDSFNGEDYP LHVQLDARTQVDGTIYVEQIKAFDFNHRQWQFVEMLPMDIFDEVRKKARLVI >gi|297148814|gb|ACGQ02000002.1| GENE 376 441539 - 441787 237 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851198|ref|ZP_05556587.1| ## NR: gi|256851198|ref|ZP_05556587.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 82 1 82 82 155 100.0 8e-37 MDTVKARIQGNATVVTIPKSFNVKPGTEYRFTKGKGGVLTLTPAKRVPSSIEELFKDWHG EYQVPDDLKEWQNVKPEGEELW >gi|297148814|gb|ACGQ02000002.1| GENE 377 442030 - 442215 151 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260664316|ref|ZP_05865169.1| ## NR: gi|260664316|ref|ZP_05865169.1| predicted protein [Lactobacillus jensenii SJ-7A-US] # 1 61 158 218 218 84 98.0 3e-15 MKKEIAQEKVYDKQLKLKTSAIQNLRESWQNASIRENMRKKFESKAKLRAKKLAMSRGFE R >gi|297148814|gb|ACGQ02000002.1| GENE 378 442561 - 444147 1646 528 aa, chain - ## HITS:1 COG:SP0137 KEGG:ns NR:ns ## COG: SP0137 COG1132 # Protein_GI_number: 15900076 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 16 528 12 535 538 157 27.0 4e-38 MNTSLKYAPKWKLVLYSLLAIISSLGNVVIAYVTKIMLNSAQNHQGSVQLIVVTATIGSL TLIAIMFINFGFRYLRNDIVQDINLSLKKRIVTYLIYNQKDSQKDGMSLLTNDMKQVETA KIQNELLVIYQGITFVIAVSVGLINSWLLTLIFMVTTLIPGFIQKFFTKNIQEKSKIWED NNAIYTQKVNDGLNGAKTVALYDVQPVLIKKIINSATNMEVALKKFNYTQGAVGELILAI ANVFSFIIPFLIGAILMFNNQIGAGTLVMIIQLSNDFINPVVDIFQRYNAIKSTDSIWGK VSDALNFKIDDSVNEVISDFNSLKVSNLSYEVPNKQLFDNVNFDVKPKDKVLLMAPSGWG KTTLLGILLGRIAPSSGKVEINQVDETGNWKKLHSYFSYINQKPFIFDDSLEYNVTLGRK VSSEKLNYAINQAGLKDLVEEKGLNYQVGEKGNKLSGGQIQRIEIARDLLAERPIILADE ATSSLDPKLSLAIHKTILEQNQAAVIEVAHKVTDEERAMFTKIVKFSK >gi|297148814|gb|ACGQ02000002.1| GENE 379 444297 - 444629 235 110 aa, chain - ## HITS:1 COG:no KEGG:MGAS10270_Spy1407 NR:ns ## KEGG: MGAS10270_Spy1407 # Name: not_defined # Def: putative cytoplasmic protein # Organism: S.pyogenes_MGAS10270 # Pathway: not_defined # 1 109 4 111 112 64 31.0 1e-09 MEPMDIYIANVPFDENNRSKVRPALVIEISQDSVMVFKITSQFKNKSIQIKNLYYPIEEW NQAGLKKQSYVDIHKLYKLPQKWIFRQQPIGKLTDNDKLGLFNFIKRKQK >gi|297148814|gb|ACGQ02000002.1| GENE 380 444742 - 444894 175 50 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|297206068|ref|ZP_06923463.1| ## NR: gi|297206068|ref|ZP_06923463.1| toxin-antitoxin system [Lactobacillus jensenii JV-V16] # 1 50 1 50 50 89 100.0 8e-17 MDNVMTGRMSQKGQIVIPASIRKALGLTKGTELSFKVEGDEITIKNYQQH >gi|297148814|gb|ACGQ02000002.1| GENE 381 445079 - 446911 2330 610 aa, chain - ## HITS:1 COG:SP2114 KEGG:ns NR:ns ## COG: SP2114 COG0173 # Protein_GI_number: 15901929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 3 583 2 578 587 657 56.0 0 MDKRTDYCGNITSQYLDQEVTLYGWVQRVRNLGNLIFIDLRDREGIVQVVVNHDSGKDLM DKADSLGNEYVIEVKGKVVKRSSVNPEMKTGEVEVDATTITILNEAKNPPFEIKDDLSAN EQTKLKCRYLDLRRSTLQRALITRSKITTAVHEFFDSEGFIDIETPDLGKSTPEGARDYL VPSRVYPGSFYALPQSPQLFKQLLMGAGFDKYYQIARCFRDEDLRGDRQPEFTQIDMETS FLDEKGVQDITERLLQKVMHDVKGVDIKLPLPRITWNDAMNYYGSDKPDMRFDMKIQDLN EVFKDSDFKVFSGAIADGGFVKAIAVEGGAKAYSRKKIEEKQEYIKRFHAKGLAWAKFED GEFSGPVSRFITDNEAEQLKKIYNLKGGELLLFVADKWKVCCDALGYLRRSIAIELNMVS KDDYHFEWVVDWPLFEYDEGDDQWIAAHHPFTMPDDEGIKLLETEPHKAHARSYDIILNG YELGGGSIRIHKKDIQLKMLKALGFTKEKAYEQFGFLLDALDMGFPPHAGLAIGLDRFAM LLTGKDNIRDVIAFPKTASASEPMMKAPSPVSDEQMAELGIEVTASARSVRDDNQKELEK EAEADIKDHE >gi|297148814|gb|ACGQ02000002.1| GENE 382 446929 - 448209 1554 426 aa, chain - ## HITS:1 COG:SPy2157 KEGG:ns NR:ns ## COG: SPy2157 COG0124 # Protein_GI_number: 15675899 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 424 426 464 54.0 1e-130 MKVQKPKGTVDILPEVSGNWEKVEQIARDFFKQANYREIRTPSFESYEVFSRSSGETSDV VEKEMYDFNDKGGRHIALRPEGTAGVVRSFVENKMYGPDVVKPFNVYYIESMFRYERPQA GRQREFHQIGCESFGSNNPLADIETIMMGNDLLNKLGVKNFELHINSLGNEDVRQKYHDA LVDYFTPVKDQLSEDSQRRLGKNPLRILDSKEEQDKQFLPNAPRIVDYLDDESKANFKYI TDALDKLGIKYVLDDDLVRGLDYYTGVIFEFMVADTDLWASPTTVLGGGRYNHLVEEFGG PETPAVGFGIGEERLMLVLEKQNPELFADTGIDFFIANIGEGTAMKSVELARTLRKQGKK VQYDVDQKKLKNQFKKADRVHAEFVITLGEKELAEGNVSIKRLADGKQIKFSWDEMNNIS EAMKNF >gi|297148814|gb|ACGQ02000002.1| GENE 383 448476 - 448916 580 146 aa, chain - ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 144 1 143 147 155 55.0 2e-38 MRVVIQRVNHAQVKIDDEVVGKIKRGFLLLVGIGQDDNEKVIAKAAQKIAKMRIFEDEEG KTNLSLADVKGQILSVSQFTLLADTKRGNRPSFVNAMRPPKADELWQDFNQELKQLGFHV ETGHFGADMKVELENDGPFTIVLDLD >gi|297148814|gb|ACGQ02000002.1| GENE 384 448916 - 451150 2647 744 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 744 1 738 738 832 55.0 0 MSKYIEMTHEEVISACKKYMNKEQLAFVERAYEYADKAHSGQKRASGQPYIIHPTQVAGT LANLGLDPDTVAAGFLHDTVEDTSVTNDDIKREFGEDVAFIVDGVTKLNKYEYKSHEEFL AENHRKMLIAMAKDLRVIMVKLADRLHNMHTLDHLRPDKHRRIASETLDIYAPLADRLGI GTIKWELEDMSLHYLNPEAYYNIVNQMNSKRSEREGYIETAIAYLKDTLDSLHIKYDIYG RPKHIYSIYKKMVNKHKDFSEIFDLLAVRVIVQNVRDCYAVLGAVHTKWKPMPGRFKDYI AVPKANGYQSLHTTIIGPGGKPLEIQIRTQQMHEVAEYGVAAHWAYKKGDTQAVEATSAG RKLDMFREILELKDETSNADEFMKSVKSDIFSDSVYVFTPKGDVYELAKGSVPLDFAYAI HTQVGSHAVGAKVNDKLVPLDYRLKNGDVVSILTQSNAEPSPDWMNMVKTSRARNKIRRF LKEQRKDENIEKGRSDVANLLRERGLNAKEYLDKEHIQKLLDQLNYHSEDEMFSQVGYGE VSAIGIVNRLTEDLRKEENKKQKELEEKILNAGQTATEETKNITPNRAVMHVKHNNGVVI QGVSDLMLHLAKCCNPVPGDEIIGYVTKGRGVTIHRTDCRNVTDEAAKEGRLIDVDWENV GERSETFNANIEIFGYNRSSLLSDVINKLNSLTKNIKNISGKVNEENIAHIYVTITVKDS QQLNEALSRLRDIPDVYSTKRSDN >gi|297148814|gb|ACGQ02000002.1| GENE 385 451172 - 451546 363 124 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0856 NR:ns ## KEGG: LGAS_0856 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 123 1 123 126 83 40.0 2e-15 MAKLQLAKKKILEASWIKKLNSYSFMPVIWWTLLLVLLAYGSSLLQIKLTWRVGFIFIIL NSLISYQVGKVINDRNLKKYWLLFLPIVFLLVVLSRYAKYNLVLIIIYLIMEFFGSLKGN IYKN >gi|297148814|gb|ACGQ02000002.1| GENE 386 451591 - 452535 1509 314 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238854674|ref|ZP_04645004.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii 269-3] # 1 314 1 314 314 585 92 1e-165 MKLLLIKLQTSHEIEDARTYFSQEQVKALGVEARKRSDFEQAGWANDSTVVDFDDIENLP DDMEFIAYFDQERDPQELIEQYKDKLTELESYGLDTGKKEISYDYVQDKDWNKVWQKYYH VLNFSRHLAIVPEWEDYQPEFPDQKVITLDPGLAFGTGGHTTTQLVMMALERSMTKPAKV LDVGTGSGILAIAASKLGAESVLATDISDEAVTAANENIALNKLNNIKVIKANLLKNING KFDLILANILAEILFDLIPELNDHLAPNGKIIFSGIDYLQAEKVKQSLAENGFSVKTTMQ EGRWVCLLIERKPE >gi|297148814|gb|ACGQ02000002.1| GENE 387 452601 - 453107 542 168 aa, chain + ## HITS:1 COG:SP0985 KEGG:ns NR:ns ## COG: SP0985 COG2606 # Protein_GI_number: 15900860 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 6 167 3 157 160 137 48.0 7e-33 MSKKRKKDKLEKTLVEKILDREKIPYEQKEFETHEEHGVFQMDTSILEQDQRLVYKTLAC EGNKTGPLVAVLPITEHLDLKKLAKVSGNKKCEMLPLKKLEKTTGYVHGANTPIGIHFND HYPIYLDNSMKNEEKIIVSSGKVGRSVQLAPLDLQKVVEGTFGDLLEK >gi|297148814|gb|ACGQ02000002.1| GENE 388 453183 - 454541 1467 452 aa, chain - ## HITS:1 COG:yjjP KEGG:ns NR:ns ## COG: yjjP COG2966 # Protein_GI_number: 16132185 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 50 293 36 270 277 69 28.0 1e-11 MVKEIDKIDMGHHLSNSHHMKIQWEEFFKSKDETPAKKATLVEKASIVGRVGLMILSCGT GSWRVRDSMNTIARALDITCSADIGLLTIDCTCFDVNNQSYSQTLTLPSTGINMTKLNEL ERFVRQFEAGDGNWNIGQIHRRLGEIEHLKSRYTPVIAGLAAAIACAGFIFLLGGGIPEI VCAFFGAGCGNYTRMKMGQRHITMVAKVATAVFVACVTYFLAFQLLHFIFNIRSSHIFGY IGSMLFVIPGFPFITAGLDLSKLDMRSGLERMAYALLIIIVATTVGWATALLIGIHPGDM TKLGLNPVNLTIFRLIASFCGVFGFSLMFNSKVNYAALTAVIGAISNTLRLSLVDYGHMP PALAAFIGVLLSGLLASFIREKVGYPRIAITVPSVVIMVPGLYMYRAVFNLGLTRISLGA YWATEAIMIVIALPLGLIAARILTDSKWRHAS >gi|297148814|gb|ACGQ02000002.1| GENE 389 454541 - 455359 616 272 aa, chain - ## HITS:1 COG:FN1377 KEGG:ns NR:ns ## COG: FN1377 COG1767 # Protein_GI_number: 19704712 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Fusobacterium nucleatum # 6 265 9 275 279 152 38.0 5e-37 MKYLHADLAIKALLYEVVTLPKPGLVDPATHGSHPDMDIYTFIDSTLSLRTYFEKAEELG RNYDGKLSDMFEKLRKHGIKAEQRMFASTKGINTHKGAIFSLGIFVCACSYAKSNNCDVF KIVQSMTQGLVERDLANIKNPKTAGEIEYQKYGKAGIRGQAEAGYPIVNQISLPFLRQAT GTLNEKLLDTLMKIASVTEDSNFIKRAGSIEKLDELKKWSKHFLDLGGAKEAEALAYLSR LDNLFSEKNYSLGGCADLLIITIFLALEEGTI >gi|297148814|gb|ACGQ02000002.1| GENE 390 455533 - 457089 1947 518 aa, chain - ## HITS:1 COG:L0041 KEGG:ns NR:ns ## COG: L0041 COG3051 # Protein_GI_number: 15673173 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Lactococcus lactis # 7 518 1 512 512 715 70.0 0 MRRATTLENSINREMPADVLEKLNLKPFESVEIGHPDIQRVAPKVHVTAGENKVVDSIED VVKETLKDGMTISFHHHFRNGDYAFNKVMDVIIKLGYKDLTLAPSSLTGVMNDKVIEAIK KGVITNITSSGMRGSLGDFVSHGGLKNPVIFRSHGNRARSIEDGEIKIDVAFLGVPVSDP AGNANGQDGKAVFGSLGYALMDAQYADKVVLLTDNVVPYPNTPASIKQTQVDYVVKVDEI GDPNKIGSGATRFTKDPKELMIAQMVNDVIVNSPYFKEGFSFQTGSGGAALAVTRYLRQS MLDKGITASFALGGITKPTCDLLEEGLVKKVMDVQDFDKGAAASMAKNRNQQEIDASWYA DPHNKGAVVNNLDVAILSALQIDTNFHVNVMTGSDGVIRGAIGGHQDAANAKMTIITAPL VRGRNATVVKNVETVVTPGDSIDVVVTERGVAVNPKRQDLIDCFKKVPSIHLVTMDELQK LAEKQVGVPNKLKYTDRTVAVIEYRDGTVIDTIKEVRD >gi|297148814|gb|ACGQ02000002.1| GENE 391 457061 - 457975 1274 304 aa, chain - ## HITS:1 COG:L0040 KEGG:ns NR:ns ## COG: L0040 COG2301 # Protein_GI_number: 15673172 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Lactococcus lactis # 4 302 3 302 304 365 65.0 1e-101 MTYIKNRLRRTMMFVPGNNPAMIKDAGIYGADSIMLDLEDSVSLTEKDAARLLVYEAIKT VDFGGSEVVVRINGQDTPFYEEDVKAMVKAGVDVIRLPKTESADMIKKLIADMEKAEEEY GIEKGSIGVMAAIESAQGVLNAPSIATSTDLMMGMALSGEDYTSDMHTHRYPDGREMEFA RNMVLHSCRAAGIYAFDSVFSNMKDTEGFYRETNYIHQLGFDGKSLVNPRQIQMVNKVFN PSKEEIENAKNVQNAIREARAKGSGVISMNGKMVDKPIVDKANRVLETAKASNLIDEEGN YIGE >gi|297148814|gb|ACGQ02000002.1| GENE 392 457976 - 458269 454 97 aa, chain - ## HITS:1 COG:L0039 KEGG:ns NR:ns ## COG: L0039 COG3052 # Protein_GI_number: 15673171 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Lactococcus lactis # 1 90 1 90 96 85 54.0 2e-17 MEIKTTAVAGTLESSDIQIMIMNGNNGIEITLESDVAKAYGDQIKSVITDTLKSFGLTNA KVKAVDKGALDCVIKARTLAAAQRATQTTDKPALEVL >gi|297148814|gb|ACGQ02000002.1| GENE 393 458259 - 459314 1113 351 aa, chain - ## HITS:1 COG:L0038 KEGG:ns NR:ns ## COG: L0038 COG3053 # Protein_GI_number: 15673170 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Lactococcus lactis # 15 351 5 346 346 315 49.0 1e-85 MDKVVDLYLNDPTTKKRWMSFLEKLDLHNFSEREVAVIDHTLGLVDEEGKLVGTGSVAGN VLKYIAVCNKDSEPGQRFNKIVTALSQYLFTQQIFHMFVFTKVKYADSFKHLGFSELART DEAAFLENGSPDVNDYLSSLPRIDGQIDKKVAGIVMNANPFTLGHRYLVEKASQENDLVY VFVVATDLSLFNSQERFELVRKGCSEFKNVVVVSGDSYMVSAATFPAYFLKSADSLIENQ TTIDARVFKNVIAPALSIKRRYVGTEPFSHATSIYNDSLQRELEPDIEVHLIPRLEKGKT TVTATKVRQLIKADDLAAIEDLVPASTAEFIKANKKELQRRIREGMKIDGN >gi|297148814|gb|ACGQ02000002.1| GENE 394 459508 - 460461 844 317 aa, chain + ## HITS:1 COG:L0037 KEGG:ns NR:ns ## COG: L0037 COG2390 # Protein_GI_number: 15673169 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Lactococcus lactis # 10 313 7 309 309 209 35.0 8e-54 MVESYDNSQLAEIARDYYLSKLPITQISKKYNLSRYLIAKAFEEAEASGVVHISIKSNVK RNNSLETKLRNLFGLKEAFVLKDQDTTSHDNEQIVDFAAHQIQNYSKAAKEIGLTWGTTV LDTIVHFDEIKRPDLSFVQIAGMSLRTDTPHANYSLIQRAAEKFDAKSYILPAPLYILNQ TAHDLMEQEPAIAEVQKKYQHLDLIFTGVGTLASMESNRVWGKLQDQIFDGIDQNKVAGM IFGRAYDINGKIFESVENKFTGIQREDIMKTPIRFAIVKNKFKTHSLLGGLRTHLITHLV VNEAIANKLLQEVEKYH >gi|297148814|gb|ACGQ02000002.1| GENE 395 460462 - 461253 780 263 aa, chain - ## HITS:1 COG:L34494 KEGG:ns NR:ns ## COG: L34494 COG0596 # Protein_GI_number: 15672802 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Lactococcus lactis # 3 260 4 263 267 112 32.0 5e-25 MEFKTSDHVLLHYTDTQTDLPAIICLPGIGASGKLFNKMVDLLKDKYRVLVLDPRNQGLS QRTYKGQRMSRHALDLEEFLAELKLTNVIVIGNSMGASTLFAYASLFGKGRFAAMIDLDQ PPKMINDDSWNFGYKDLTWDNFPISLKYHDTVHANYVRVDPEIAVPVKLERQEHPYDESS NYNFLCDHAFQDWRDVVMDLPVPLLVLAGEKSPYFNCEFAQAMQYINEKIESQVLAECGH ILQAERPEETTKAILSFLERHGL >gi|297148814|gb|ACGQ02000002.1| GENE 396 461300 - 462223 1332 307 aa, chain - ## HITS:1 COG:lin0242 KEGG:ns NR:ns ## COG: lin0242 COG0039 # Protein_GI_number: 16799319 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 3 302 6 305 313 286 49.0 3e-77 MSKVLLVGDGAVGSTFANDLLQNTKLDELVICDVVKERPLGDSMDLEDITPFTGSTNVHA GEYSDAKDADVVVITAGIPRKPGETRLDLVNKNVKILKSIVKPVVDSGFNGIFVVSANPV DILTTLTQKLSGFPKNKVIGTGTSLDSARLRVELAKKLNVKVEDVNAYVLGEHGDTSFEN FDEATVAGKTLTSYSAMSADVLTAIESDVRKKGGEIIAKKGATFYGVAMMLAQIVKAVLE NKEICLPLSAPITGQYGIKHDLYLGTPAVINANGISHVIEAELSSKELAKMQNSADKMQE VLAGVEE >gi|297148814|gb|ACGQ02000002.1| GENE 397 462252 - 463388 1423 378 aa, chain - ## HITS:1 COG:CAC0566 KEGG:ns NR:ns ## COG: CAC0566 COG2055 # Protein_GI_number: 15893856 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Clostridium acetobutylicum # 8 365 12 369 369 350 47.0 2e-96 MAEGKKVKFSYDKLNMLCMDAFQKFGFSEEKARIITDVLLTADLYGIQSHGMQRMVRYYK GIQKGTMKVNAEPEVVFETPISAVIDGHSGMGQLNGHFAMELAIKKAKEVGVGIVSVRNS NHYGIAGYYAKMAAKENMLGFSCTNSEAIMVPTYASKAMIGSNPQAWCVPANPYDFLFDA STTVVTRGKLEMYNKLGKKLPDGWALDKNGQPTNNAGEVLSNIVGHVGGGIMPLGGNTEE LGSHKGYGNGMVAEIFSSILSQGLTSDLVMKDGKAGTCHGFMAINLSSFGNPEAIKQHFS DYLQALRDAPKAVGQERIYTHGEKEMAAIKDREANGIPVIDKTMTEVYDLCQYLDLDFSK YFGDYVPPKADGMFTGNY >gi|297148814|gb|ACGQ02000002.1| GENE 398 463486 - 464025 390 179 aa, chain - ## HITS:1 COG:SPy1190 KEGG:ns NR:ns ## COG: SPy1190 COG3697 # Protein_GI_number: 15675159 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Streptococcus pyogenes M1 GAS # 7 174 9 176 192 81 32.0 8e-16 MNIFKIGEPVTILDVLIDKDRRVELQNRLVLENKTWTIIGAKLNIPGPIKNNLVIEKFFK RELINFEKNAPFLLTLKEDWLEKKTGPEYFYLAMDKPINVKKYCIKFEQTNQATRLFDLD VHYFEKGQVKDLSRNQLGISGRSCFICGSPAKECARARKHSVEQLQEEVSKLINQDIDF >gi|297148814|gb|ACGQ02000002.1| GENE 399 464076 - 465263 1061 395 aa, chain - ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 32 378 33 382 443 181 35.0 2e-45 MRRFRDKLKIAWLVALCIIGIINLTFFNVVKADEKPVNVKAAFMMDEKTGQILYQKNATR KYAVASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWRFSNVPLIYNERYTVR SLIESMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGN LKLPKIDDNQENQFSAKDMALISKYLIDKYPEVLNITKTKYANFKISQDNEIKMENIIYM LEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVPGEYSNQFIQTNNM IDTVFDKYQLVKINKNNLPKKYQKITITSKKQKKKISVVPETDSALWLAKDQKLANLSPK LEVKKQNKLKKGSIVASLIYKLDNHSSVKINLQKK >gi|297148814|gb|ACGQ02000002.1| GENE 400 465386 - 466840 1668 484 aa, chain - ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 7 484 5 472 472 451 53.0 1e-126 MKHLEKVNYKGFIIPIIVGLIFWFTTPVRPAGVTVQAWHMLAIFLATIMGCIFKPLPIAA TTLIGYTLTIFLGLAPIKDVVVKGHTVDLSALSAFSNSAAWLIAMAFMLSRGIIKTGLGR RIAFYFIEWFGHKSLGLGYSVAAIDLVVSPATPSNTARAGGIVFPLVESLAENFDSKPND PSRKKMGSFLTFVEFHANLITSMLFLTAMAPNLVAVELAKSLGVNITWIGWFEATCVPAL LALLIVPFIIYKMYGPDIKETPNAKEWASAELKKMGKLSVPEMWMAGIFLLTLVLWMLSS SISLDATLIAFISMSLLLLTGVLSNDDFLSEKGGWNVLVWLSILVYMANRLTKFGFIKWL SETISKSVGHDNWIIVLIILGVLLFYTHYLFASATAHNTAMYGPFLAVALSAGAPKMAAA MFLAIFSAIMASTTHYANGPASVLAGSGYVKQGEWWKMNFILGLFYIVFFIVFGLGWMKI IGLW >gi|297148814|gb|ACGQ02000002.1| GENE 401 467115 - 468536 1321 473 aa, chain - ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 7 473 5 471 472 462 56.0 1e-130 MKNLAKVNYRGFIVPVVVGVLLWLLTAVRPTGISVSGWHLFAIFLATIIACITKPLPIVG VAIISYVLILLTGLVKMKFALTAFADSTPWMIAMAYMIARGFVKTGLGRRIALIFVRNFG KKTLGLGYSLSLIDLLVAPATPSNTARSGGIVLPIIQSLSETFGSKVGDGTEKKIGSYLV YNEFHANTISSSLFMTASAPNVAAVGLAEANGVHISWFEWLFAALVPGLIAFLVVPFIIY KMYPPEIKETPNAKQWADHELEKMGKMTIAEKLMLTIFVLALVLWMVSSFIGLDATLVAF LAVALLLLSGILTTDDLLHETGAWNVVVWFSILIFMASQLSVHGGVIHWLQLFIKHSIKG MNPMLVMAILVLVYFYTHYFFASGTAHVVAMYAPFLLIAQGEGVPVMFAAIMLGITGAIY QSTTHYSCGPATALFASGYVKQTDWWKMSFVLGLFYLVLYGVIGGIWMKIIGL >gi|297148814|gb|ACGQ02000002.1| GENE 402 468706 - 470097 2140 463 aa, chain - ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 10 461 54 504 506 429 53.0 1e-120 MAKFVFTPKESSEIAASYDAVIVGAGGTGLTAAMQAHELGLKVAVFEKNEGLGGNTNKAS SGMNASESNVQYAQGIIDNKEDFYKETLKGGGLLNDRDMLRYFVDHSAIAISWLEEHGID LTDLTITGGMSKKRAHRPASMAPVGGYLITGLLKKIQEEDIPVFNKAKVTKLVEADKSVT GIEVETESGLKKVSAKAVLLASGGFGASKEMMKKYRPDLVDYKTTNQAGATGDGLKLAEA VDAQLMQMEYVQVHPTAQTDGARTFLIGEAVRGEGAILVNRAGKRFVNELNTRKIVSNAI TGLNEDGAYLIFDQGIRDHVKAVEFYDAIGLVKHGAGLAELANEIGVDAANLEATVKTWN EAVKASNDTEFGRSTGMDRGIEKGPFFAIHIHPAIHYTMGGIHITPETKVLDTNGNVIKG LYAAGEVSGGLHGNNRIGGNSIAETVIFGRQAGMQMAKFAREN >gi|297148814|gb|ACGQ02000002.1| GENE 403 470115 - 471518 1833 467 aa, chain - ## HITS:1 COG:lin2328 KEGG:ns NR:ns ## COG: lin2328 COG0114 # Protein_GI_number: 16801392 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Listeria innocua # 7 460 3 455 455 445 52.0 1e-124 MAEQEYRIESDTIGPVKIPKDALWGPQTERSRNNFPSGELMPLQIIRAFLHLKKAAAQSN VEVGDEPEEKGKAIEDAIEHLLALSDEDLRKDFPLHVLQTGSGTQSNMNVNEVVANLANK LHPGLNILPNDDVNRGQSSNDTYPTAMNIVAVEAIDKLEPAIEHLISELKEKQNKYWKTV KVGRTHLQDATPLTFGQEVSGYISALKHDLEYIRQLKPTLYELAIGGTAVGTGLNAAPGM TEKIAGKLSEVYGHEFKVDTNKFWGLAHHSGIDVMHGALKTLAADMFKIAQDIRFLASGP RAGYNELNIPANEPGSSIMPGKVNPTQAEAVTMAAAKVFGNDTTITFTASQGNFEMNVYK TVMIAAFLDSCDILTGTITGFADKMIHGLTVNADRMDDLLENSLMTVTALSPHIGYHEAA TIAQTADKEGTTLREAALKSGKVTEEQYNEWMDLLKMTNIDRSKPED >gi|297148814|gb|ACGQ02000002.1| GENE 404 471690 - 472391 944 233 aa, chain - ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 231 1 231 231 234 63.0 9e-62 MLKLLQQYLPNVFSLGWSGDAGWGTAIFQTLFMTFWSAIFGGFLGLIFGVILVLTEEGGI LANKFWYNLADKIVSIFRAIPFVILLAFIAPVTQKIVGTQIGIKAALVPLTLGVFPFYAR QVQVALKGIDPGKIEAALSLGATTKDIIFEIYLKEARSELIRVSTVTVISLIGLTAMAGA VGAGGLGNTAISYGYNRFNNDVTLVATILVIILIFITQVVGDFLANKFNHQVR >gi|297148814|gb|ACGQ02000002.1| GENE 405 472384 - 473442 1268 352 aa, chain - ## HITS:1 COG:SPy0320 KEGG:ns NR:ns ## COG: SPy0320 COG1135 # Protein_GI_number: 15674484 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 2 344 4 350 354 324 52.0 2e-88 MSIIELNNISVTFKQKKEVVKAVDGVTLKIQKGDIFGILGFSGAGKSTLVRTINLLQKPS AGDVVVQGTTFVKNGQVAISGKELQKHRRKIGMIFQSFNLLNETSVLENVAFALRHSNLS DEEIEEKSLRLLELVDLKEKADFYPSQLSGGQKQRVAIARALANDPEILLSDEATSALDP QNTNQILDLLKKLNKELGLTIVLITHQMEAVKKIANRVAVMEHGHLIEEGSLKQIFLEPK KELTRNFVGGSSAAISTLNKLNLDKLSENEAIYQLTYSLSNVTKSIIIELYSKLGVEVSM LYGNVELLNEEPIGTLVVLLKGDFEKQKAAREFLAKENVLVTELDERGQINA >gi|297148814|gb|ACGQ02000002.1| GENE 406 473452 - 474303 1001 283 aa, chain - ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 30 283 31 286 286 271 59.0 1e-72 MRKKRRKNRIIASVFAIFLLVAGYFSFVYQAPKESSKTVTIGVVGQTKEDAKIWDSVAKT AKAKYGITIQIKNFTDYNQPNKALLNGDIDLNAFQHFAFLDAWNKANKADIVSIGKTIIA PIRLYSLKYKSINSLPDGATIAVPNDASNESRALYVLKNAGLIKLKSGKKIVSVADITSN PKNLQIKEVAADQAGRIIKSVDAAVVNNSYAAPAGLGDKQTIYVEPVNKDSEQWINLIAA RKNDKNKQIYLDVVKAYQTKKTKELVKKYYGNTELTGWDIKIK >gi|297148814|gb|ACGQ02000002.1| GENE 407 474696 - 475061 512 121 aa, chain + ## HITS:1 COG:L153973 KEGG:ns NR:ns ## COG: L153973 COG1970 # Protein_GI_number: 15674083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Lactococcus lactis # 1 121 1 122 122 120 54.0 6e-28 MIKEFKDFISRGNVLDLAVGVIIGSAFTSIVNSLVTNLLNPFLGLFLGKIDLSNLILKVG GASFKFGSFINSIINFLIIAFVVFLIVKSVNKLMPKPEQKPAGPTPEQEYLREIRDLLKN K >gi|297148814|gb|ACGQ02000002.1| GENE 408 475176 - 475763 695 195 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0843 NR:ns ## KEGG: LGAS_0843 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 5 195 23 244 244 101 36.0 2e-20 MGNFFLWIFLSIIGYFIAKKWLFKAQPHSIRIYAVVFSISALGLAVTTHPTTKPATHYLV KKVKADNFSSNKATNESLNAEKSSLQKQADQLKEQVSSAEEESEAIASSKETQSSKAAAE SSSIAQAKAQEQRQSTTKINQGDFNTATTGRIVGNARSKIYHVPGQAGYNMNSANAVFFN SEQEAIAAGYRRAKR >gi|297148814|gb|ACGQ02000002.1| GENE 409 475763 - 476626 723 287 aa, chain + ## HITS:1 COG:no KEGG:LAF_1832 NR:ns ## KEGG: LAF_1832 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 43 284 48 289 292 315 64.0 1e-84 MKNKKLLISILLTILFFGAGINGNLSSVQESQKPKVITKVKYDKSEVKKSEQLSDENAEL SDEIQELKTQIKDYKKALKKLGKASPTDLPQSEKNNANLASLNYNGEDVITVNNNNPSFT KSDLSTANGAWQSYGDLDNLNRATSANALLNISLMPKAKREPLHVNPTGWHNKRISGGWL YNRCHLIGYQLTGQNNNWKNLITGTRQLNDPDMLKYENEVAGYIKESSNHFVRYRVTPIF RGNELLARGVQMEAQSTGENTIRFNVYIFNVQPGYNLNYNDGTSSAA >gi|297148814|gb|ACGQ02000002.1| GENE 410 476676 - 476822 118 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKITAFLISLVISAALLFIFRSNIWLAITFTVFVGISVAGLFSSFAK >gi|297148814|gb|ACGQ02000002.1| GENE 411 476959 - 477888 874 309 aa, chain - ## HITS:1 COG:SPy0510 KEGG:ns NR:ns ## COG: SPy0510 COG0463 # Protein_GI_number: 15674614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 1 308 1 307 308 349 54.0 4e-96 MDKLSIIVPCYNEEESIPLFYEAVQKVVTKMDIEPEYWFVNDGSHDNSLAEMRALHEKDE KHVHYISFSRNFGKEAGLLAGLDAATGDYVVVMDVDLQDPPEFLPEMYKELQSGEYDCIG TRRVDRTGEAKIKSFLSDMFYKCINKISNTEIVPGARDFRMMTRQMVDAVLSMREYSRFS KGIFSWVGFKTKYLDYHNVERVAGESDWSTWQLFKYAMDGISDFSQAPLSLAVWTGSVTS AISVISIIFVIIRKIMSPMSSIFGWASMVSIILFLGGIQLLCIGIVGKYIGRIYLQVKHR PIYIVKEKK >gi|297148814|gb|ACGQ02000002.1| GENE 412 477998 - 478414 311 138 aa, chain - ## HITS:1 COG:no KEGG:LJ0167 NR:ns ## KEGG: LJ0167 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 8 135 7 133 145 130 58.0 1e-29 MKEKITSLIKSDDFREFVIYGFIGVFGLFIDFGLFWLLTKFTSLPVEIANFISSSCALVN NFYMNTYLNFHVRDHLLSRFIKYYIIGQITTLITTTCLFIFVTLMHQNEMIVKVISTFLA TMLQFVVNKVFTFKKNEL >gi|297148814|gb|ACGQ02000002.1| GENE 413 478423 - 478926 524 167 aa, chain - ## HITS:1 COG:lin1987 KEGG:ns NR:ns ## COG: lin1987 COG0262 # Protein_GI_number: 16801053 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Listeria innocua # 1 166 1 159 160 124 40.0 8e-29 MLSFVWAEDNKHQIGYKGHLPWHLPADLAHFKEKTMGKTMVMGKKTFLSLPFVLPKRKHL VLTHDEALIQKYKTNNQVNFVTSMEQLRKYLLSHKEDEVAVIGGVSVFEGLKDIVDCLEK TEIDGEFKADTIMPKIDYSAFKLIKKESFTADKKNPYDYSFLTYLRK >gi|297148814|gb|ACGQ02000002.1| GENE 414 478936 - 479892 939 318 aa, chain - ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 8 318 4 314 314 415 61.0 1e-116 MAVLEQPYLDLLKNIMETGHDKTDRTGTGTRSRFGAQMRFDLSEGFPLLTTKKVPFGLIK SELLWFLRGDTNIKFLLEHNNHIWDEWAFKKWVNSDDYHGPDMTDFGLRSQADSEFKKQY DEQMQIFTKRILEDADFAKKFGNLGDVYGAQWRHWKKRSGGSIDQIQEVLNQLTIHPDSR RMIVSAWNPEDVPTSALPPCHTLFQFYVADNKLSLQLYQRSGDMFLGVPFNIASYSLLLS LVARQTGLEVGEFVHTLGDAHIYKNHFDQVEKQLSRDPFDSPKLWLNPAKKDISDFEMED IKVVDYKHHGVIKAPVAV >gi|297148814|gb|ACGQ02000002.1| GENE 415 479999 - 480865 1114 288 aa, chain + ## HITS:1 COG:MTH692 KEGG:ns NR:ns ## COG: MTH692 COG0330 # Protein_GI_number: 15678719 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Methanothermobacter thermautotrophicus # 30 283 27 293 318 141 34.0 1e-33 MLFSISTLLITIIIVALIIFSCSIVPQNYEGLVETLGKYSKTERAGLIFIIPFVQRIRKV SLALQPLEISKYSIITKDNAEVSTSLTLNYQVTDSFKYFYNNTDSVESMVQLVRGHLRDI IGRMDLNDALGSTSQINAQLAEAIGDLTNVYGIRVIRVNVDELLPSKEIQRAMDKQLTAD REKTATIAKAEGEARNIELTTKAKNDALVATAKAQAEAIKTQADAEKYRIEQLKAALANA PEDYFKNQSIAAFKDLANGENNLIVMDKDNLTQLGNIPAVKEIWKKQD >gi|297148814|gb|ACGQ02000002.1| GENE 416 480926 - 482308 1632 460 aa, chain - ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 8 459 5 455 459 458 56.0 1e-128 MAENKAPKLKRSMTAGQMEMISLGGAIGVGLFMGSTSTIKWTGPSVLLAYIFVGLILYIV MRALGEMLYVNPGTGSFADYATEYVHPLAGNMAEWAAVFQYIVVGISEVVAATEYLKFWW PKTPALLVGIIIIGFLLLANLASAKAYASLEFWFSMIKVVTIVLMIIIGLLVILLGFGNN WKPVGFSNLWSHGGFFTGGLKGFIFSMSIIVGSYQGIELIGISAGEVANPKQAVVKSVKS VLWRILIFYVGAIFVIVSIYPWNQLSAIGSPFVETFTKVGITGAASIINFVVLTAALSGA NSGIYSSSRMLFKLANEGDAPKIFGQISKKIVPSKAIVGITSGILIGFVLNFILSTVNKT MDEIFVIVYSSSVLPGMVAWFVILMAEYKFRKNNPEIMKDHPFKLPLYPYSNFFAFAVLV LIVIFMFLNDETRISVTVGALVLLASATEYYFRRMHKKNK >gi|297148814|gb|ACGQ02000002.1| GENE 417 482301 - 483701 1680 466 aa, chain - ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 10 456 5 451 459 468 56.0 1e-131 MDKKTSSAPQLKRSMSAGHMEMISLGGAIGVGLFMGSTSTIKWTGPSVLLAYMFVGLILY IVMRALGEMLYVNPGTGSFADYATEYVHPMAGYMAEWANVFEYIVVGMSEVVAATEYLKF WWPQVNVFWSGVIIIAFLLLANLASAKAYANLEFWFAMIKVVTIILMIILGFLVIFFGFG NGGHPTGFSNLWSHGGFFTGGVQGFFFSMSIIVGSYEGIELLGISAGEVENPQEAVVKSV KSVLFRILIFYVGAIFVIVTIYPWNQLSSLGSPFVTTFAKVGITAAASIINFVVLTAALS GANSGIYSSSRMLFKLAHEGDAPKVFGYLSKHVVPSRAIMGISSGIFLGFVLNVFASQFS KSTEDLFVIVFSSSVLPGMIPWFVILLAELRFRKNNPELLKDHPFKLPLYPYSNYFAFAM LLVIVGFMFINSETRVSVIAGLLVLIVAAVVYVLRHGLKVGGDSHG >gi|297148814|gb|ACGQ02000002.1| GENE 418 483802 - 484503 472 233 aa, chain - ## HITS:1 COG:BS_ydfK KEGG:ns NR:ns ## COG: BS_ydfK COG1811 # Protein_GI_number: 16077612 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, possible Na+ channel or pump # Organism: Bacillus subtilis # 6 221 1 215 229 138 38.0 1e-32 MGREILIGILINGLAVVIGTAIGCLFKQHLKEKYIDALWLALGLAALGVGVNTVVNYMNK SNFPLLFVVSLTLGALIGKFFEVDQHVESLLETKFTSELAKGVATATFLDCIGALSLLGP INAAKTGDLTFLLTNASLTFVCAIIFGASFGWGMLLETPILLGWFFLIFCLVKVGFANFF SMELVNELCLVGGFLITASGISLLKIREIKSLDLLPSLLVPIFYFLGKMIFHY >gi|297148814|gb|ACGQ02000002.1| GENE 419 484677 - 486215 1392 512 aa, chain + ## HITS:1 COG:no KEGG:SMU.739c NR:ns ## KEGG: SMU.739c # Name: not_defined # Def: hypothetical protein # Organism: S.mutans # Pathway: not_defined # 3 510 8 509 518 339 56.0 1e-91 MKRKKLKLISIPLIALTIAGETAIITNQNVSAANTTPPSMPSGSKKGGANTQSYDYTGSL SASVLANSTSRKLLNKTLSSSSKDKNVALIENAGTLTLNRVTLNKTGSSSNDDNNNFYGT NSVLLATGKKSTAYIKNSKIKSNATGANGIFASNKATIYANNTSITTTGSANSRGLDATY GGTIIANKLSISTKGDHSAALATDRGGGNVSVTNSKLKTAGSGSPLIYSTGNIEVNNVTG TATGSQIAGMEGYNNIYISNSKLSSTNNKKTGSDPIKNGVILYQSMSGDADTSTSESAKF QAVNSSLSTSIDSGAMFYVTNTSANVVLKNTKLNFNSNKVNLLTIEGNNSNFWGSAGSNG GKVTFTGIKQKLNGNISVDNISSLKLYLLKNSTYTGKTSITTNSKATSSSKTSAPITINL TKGSKWVVTGNSTVSNLNVEAGAKIVDNSGKTVTIVNSAGKTLVKGTSKYKITVNGSYSK KVTTSSANKLSKSSVSRTAFDKYFNTKTEFSY >gi|297148814|gb|ACGQ02000002.1| GENE 420 486556 - 487125 251 189 aa, chain + ## HITS:1 COG:no KEGG:LJ1417 NR:ns ## KEGG: LJ1417 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 189 1 191 194 158 47.0 1e-37 MNLSWLIALILSATILFILIYKLENSKKFRHLDSSWHQRLIHPVQGSFWSIIEFLNEPKL IAFWDTLLAAVLLFNGEIKKAIWVLVTLAITDIIGILLKHTIKRKRPSENTRQSYSFPSG HVLSITSLSLIIWQIYGGILGVSLFFVLFSLWCLVVFSRIILKAHYPSDIVGATALSIFC FLLTMPFIA >gi|297148814|gb|ACGQ02000002.1| GENE 421 487634 - 488464 901 276 aa, chain - ## HITS:1 COG:SP0742 KEGG:ns NR:ns ## COG: SP0742 COG1307 # Protein_GI_number: 15900637 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 5 275 4 279 281 213 41.0 4e-55 MEEIKLIVDSSSNLKSDSKSNLTVVPLTINLGNQTFLDNDQMDYSAFLDKIYENKEKSGT SCPNLQEWLDALAGSKKAIILTLTSGLSGTYSSAKQAVEIYQEENPDSEVLVLDSKSAGP ELKLLVDKLIELVQNTSFNSIGESIKTYQASTHLLFSLESLHNLAVNGRISSAAARIAGM LHIRMIGEASAEGTLEPLGKARGSKKTVLELFKNMEKQNYSGGKVYIDHVDNLKDAESLK EKISEKYPEAQIEIGICHGLCSFYAEKGGLMVGFEN >gi|297148814|gb|ACGQ02000002.1| GENE 422 488581 - 489090 357 169 aa, chain + ## HITS:1 COG:no KEGG:LAF_0389 NR:ns ## KEGG: LAF_0389 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 9 166 8 165 171 149 49.0 4e-35 MENSSILNQIQSDVAKFSLPAFSEIPDIGLYLEQTCQFINQSLAPFSELYLTNSMISNYV KKGIIEKPIKKRYSRQQIARLIFIAFAKPVLSLDNLKVAIKMQDNSYNIDVAYQYLREES INCLEYVYQLKTQLDNIGKTQTTEKEILRNIILAAVHEIYLNSYFSVTK >gi|297148814|gb|ACGQ02000002.1| GENE 423 489154 - 491430 2183 758 aa, chain + ## HITS:1 COG:Ta1045 KEGG:ns NR:ns ## COG: Ta1045 COG0474 # Protein_GI_number: 16082076 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Thermoplasma acidophilum # 7 731 21 756 780 388 33.0 1e-107 METQLHGLTSAEAEKRLKKDGPNEVPEPEFNFWKAFLSKLWNLSAWILEAALLLELVLGK GIQAGFVLLMLLFAAYNGATQKKKSRRVLNDISHELTPTVAVERDGKWIKLNSKQLVVGD LINLKRGDVLAADVSLKDGKITCDESSITGESAPVNKQLNDTAYAGTTVVDGSGLAIVTA TGANSRSGKTINLINQSAAPGHLQQLLTKIIFYLCMLSLTLTIIIIIAAFMRGEGIHGVI QMLPFLAMMFIASIPVAMPSTFAISNSFEAKRLSKEGVLTSDLTGIQDAANLNLILLDKT GTITENKTAVSSLTNLSSLSDSEVLQFAEAATDKRNTSIIDAAIIEYSEQKGLTSLTPEK FVPFTSDTGYSEAVVNGQNLKLGSFKQLSLIDTNANEKIKDIDFTAGRSVALLIDNKLAA VFILQDKVRSDSKAALAELKKRGIRPIMLTGDNQRTAAAVAKQVSLTGNVISIHDFNEQT DLDSLAGIADVLPEDKLKMVKFFQEKGFIVGMTGDGVNDAPALKQAEVGIAVANAADVAK RSGKMVLLDDGLMPIVKILDAGHRVYQRMTTWSLTKLSRTAELTMILTFGYLLFGYLPMA LNAMVIYTIMNNMVTMMIGTDNTHITYKPENWNIDRMAKVSMSLASGWTLIGCLFVWFMN NKLGFTQGQVGTMVYVYCVLSAMLIVLITRTKTYFWQSHPSRLVGTVQIIDVALTFALAL LGIAMTQISIINLGLVIIVSLISAIIIDLIYQPIMKNR >gi|297148814|gb|ACGQ02000002.1| GENE 424 491488 - 492015 748 175 aa, chain - ## HITS:1 COG:FN1483 KEGG:ns NR:ns ## COG: FN1483 COG0503 # Protein_GI_number: 19704815 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Fusobacterium nucleatum # 3 172 1 170 170 218 59.0 6e-57 MTVDFKKYIASVQDFPNKGIVFRDITPILSDGEIFRAATHELAEYAKKRGADVIVGPEAR GFIVGCPVATELGVGFVPARKPHKLPREVERASYDLEYGSNSLEMHKDAIKPGQKVVICD DLMATAGTLHAAIELIERLGGEVVGAAFYVELPDLKGREKLPNIDIFSLVQYHGA >gi|297148814|gb|ACGQ02000002.1| GENE 425 492033 - 494294 1936 753 aa, chain - ## HITS:1 COG:BS_yrvE_1 KEGG:ns NR:ns ## COG: BS_yrvE_1 COG0608 # Protein_GI_number: 16079816 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Bacillus subtilis # 1 544 6 558 560 394 38.0 1e-109 MTWKKREATELSSELIEKYQLSPLTAKLFSLREINTDEKLNYWLNSTEEDFADPYLMHGM QETVDRINQAIDNFEKITIYGDYDADGITATTIMYETLAILGADVHYFIPDRFKDGYGPS MKRYQQIVADGTKLIITVDNGVTGIEEVRYAQDNGCDVIVTDHHSFQEQMPEAKAIVHCN YPNQKYPFDDYCGAGVAYTICRALMEDTMPELIELAMIGTIGDMVKVSGEGHIIVKRGLE LLNHTQRPGLRALIKEAGLELGNIDETDTGFQIAPRLNATGRLASARLAVDLLLSDDLEE AQKLAKKVEELNNERKELTQKVYESALNQIKKFGYNSQNTLVLYDSSWHEGVLGLVANKI VEKVHKPTILLTKNEDGLVKGSGRSNAGFNLFEALFKLKDSLFENFGGHDFACGLSLKED KINSLRKAFENSYQASSNNAIDYYDLDLDTNSVDLSILDDMKKVGPFGTDNPEPVYCVKE PEISSLFVIGKDKNHLKFNVGNLKIIGFNMAYLTQNLLPYVTAIYLNISKNMWQKKLSLQ GQLKSIDFGVPSFSLGKNKAIDFRRQRHILGFADRFVLFDEHNLNKAVGQLGIDQDKIIL AKDYEGSGEIVTLLDAPHNRQELDQVLKNEYQQLYLRFMIDQLPISMMPSRTEFAKTLKY VYSHPNLKPEDYRLVAPYLGLDGDSIYFILRVFLELEFVKMDKAELVPNKVANHKKLTDS RYFLGTQSQLNFVTSLRTMPSSQLLAYVNQHLK >gi|297148814|gb|ACGQ02000002.1| GENE 426 494294 - 495004 862 236 aa, chain - ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 11 236 44 280 287 138 37.0 1e-32 MTDDNKQKLSKKSKTSKKTILLRVLAVILFIVGIILVFNGPIQEYFVKQNQTSTLQGLTK KTVAANQKKKGMFDYSKVQDIDIAKVTRSRVKNTANAIGAIAIPKVNLYLPILLGLSDDS LSTGAGTMREDQVMGKGNYPLAGHYMTAKGVLFSPIEDTKIGQKVYLTDLKKVYVYRIYM KRVVDPTAVWLVNNTKSNIVTLITCADGGINRWAVRGKLIQTKKATTKNLSVFKLK >gi|297148814|gb|ACGQ02000002.1| GENE 427 495006 - 496844 2085 612 aa, chain - ## HITS:1 COG:L0159 KEGG:ns NR:ns ## COG: L0159 COG0481 # Protein_GI_number: 15673090 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Lactococcus lactis # 1 607 1 607 607 806 65.0 0 MDLKKLKDYQKHIRNFSIVAHIDHGKSTIADRILELTDTVAQRQLKSQMLDDMPLERQRG ITIKLNSVEVKYHAKDGEDYIFHLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVQAQ TLANTYLAIDDDLEILPVINKIDLPSADPENAKMEIEEMLGLDASDAVEVSGKTGLGIPE LLERIVTDIPAPQGDLEAPLKALIFDSKYDDYRGVVLAVRIEDGMVKPGDEIEIMNTHKK YEVTEVGVSNPHPVKKDMLVAGDVGYLTANIKSVRETRVGDTITSAKKPTEEALPGYRQI PPMVFSGMYPVDNSKYDDLKEALEKLQLNDAALEFEPETSTALGFGFRCGFLGLLHMDVV QERLEQEFDLDLIMTAPSTDYHAIMNDGTTKVIDNPSDLPDAGEYKEVQEPYVKAEIMVP NDFVGPVMELCQRKRGEFQTMDYLDKYRVNVIYHIPLAEIIFDFFDDLKSSTKGYASLDY EIIGYRATDLVKIDVLLNKEPIDALSFIAHRSDAQARARQMTSLLKKLIPRQNFEVDIQG AIGAKIISRATIKPYRKDVTARIHTGDPDRRAKLLDKQKRGKKRMKAVGKVEVPQDAFMA VLKMNDDDIKGK >gi|297148814|gb|ACGQ02000002.1| GENE 428 497021 - 498157 1704 378 aa, chain - ## HITS:1 COG:SPy1759 KEGG:ns NR:ns ## COG: SPy1759 COG0484 # Protein_GI_number: 15675605 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Streptococcus pyogenes M1 GAS # 6 377 5 375 378 355 53.0 1e-97 MATSRDYYDILGLDKNASEQDIQRAYRKLSKKYHPDINKAPDAEEKFKEVNEAYEVLHDK QKRAQYDQFGQAGVNGQAGYGAGNGQYGDFSNFSGFGDIFSDIFGGASQRHVDPTAPVKG DDLDYTMTIDFMDAIKGKTSNVTYTRSETCEVCHGTGAEKGTHPITCDKCHGSGYMTVTQ QSMLGVIQRQTLCDKCHGKGVIIEHPCATCHGAGHTDKKQTLEVKIPAGIDNGQQIRLSG QGEAGKNGGPYGDLYIVFRIRPSKDFTRRGNTIYTTVPISFAQATLGDEIKIKTVNGETS LKIPAGTQPGAKFTIRGEGVPYLRGDGKGDQISTVEVVIPKSINDKQKQALVDFVKAGGD SITPQEKNFFERLKDKLG >gi|297148814|gb|ACGQ02000002.1| GENE 429 498229 - 500070 2462 613 aa, chain - ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 613 1 608 611 786 73.0 0 MSKVIGIDLGTTNSAVAVLEGKEPKIITNPEGNRTTPSVVAFKDGEIQVGEVAKRQAITN PNTIVSIKRHMGEAGYKVKVGDKSYTPQEISAMILQYIKKFSEDYLGEEVKDAVITVPAY FNDSQRQATKDAGKIAGLNVQRIINEPTASSLAYGLDKDEEDEKILVYDLGGGTFDVSVL ELGDGVFQVLSTNGDTHLGGDDFDQKIMNWLIENFKADNGVDLSKDKMALQRLKDAAEKA KKDLSGVSSTHISLPFISAGESGPLHLEADLTRAKFDELTHDLVERTKIPFDNALKDAGL TVNDIDKVILNGGSTRIPAVQEAVKKWSGKEPDHSINPDEAVALGAAVQGGVISGDVKDV VLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQIFSTAADNQPAVDIHVLQGERPMAA DNKTLGRFELTDIPAAPRGVPQIQVTFDIDKNGIVNVSAKDMGTGKEQKITIKSSSGLSD EEIKRMQKEAEEHADEDKKKKEEADLRNEVDSLIFTTEKTLKEVGDKVPADEVSKVKDAL EALKKAQKDNNLDEMKEKKDALSKVAQDLAVKLYQANGAQGQAGQAGPNPSDNNDGNNGD TVNGDFKKVNPDK >gi|297148814|gb|ACGQ02000002.1| GENE 430 500122 - 500703 724 193 aa, chain - ## HITS:1 COG:L0273 KEGG:ns NR:ns ## COG: L0273 COG0576 # Protein_GI_number: 15672935 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Lactococcus lactis # 41 193 32 179 179 104 46.0 8e-23 MSKKEFPSEKDLDQKPKEDLKHKETKITSSKADKDTQKVGEDLAKEIEQLKAAKAELEDK YLRSEAEIQNMQNRYNKERAQLIKYESQSLAKDILPAVDNLQRALSVKVDDEASKQLKKG VEMTLDAMVKAMADHGITEIKAEGAKFDPNLHQAVQTTVAENDEQKDHVVQVLQAGYQYK DRTLRPAMVIVAQ >gi|297148814|gb|ACGQ02000002.1| GENE 431 500717 - 501760 975 347 aa, chain - ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 343 1 340 345 230 38.0 3e-60 MLTERQELILKTIIKDFTQTHEPVGSKTVMSQLPMKVSSATIRNEMAVLEEQGLIEKTHS SSGRIPSSDGYRYYLDHLVEPLQLPESVYNQIVCQLDRPFHQVNEIVQEAAKILSDLTNY TAFAEGPESRHVLITGFRIVPLSNRQVMAILVTNNGNVQSQVYSLPRFTNGEEIEKAVRL INDELVGKSLSAVSPEMLSELVSHQLGGNADDLLSLLADVLKDAASEQMYVDGQINLLNN ATGNVQDIRSLYEMFDQNDMISSLLSFEGDDSDEHFPVQVKLGSELPSDLLKNYSLLTAS YSVGSHGRGTIALLGPTNMPYSQMIGLMEYFRQELAKKLLDYYGKFQ >gi|297148814|gb|ACGQ02000002.1| GENE 432 501880 - 502818 564 312 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 309 1 314 317 221 39 4e-56 MEIIHLSYPIKKELTRTHVVLALGFFDGVHIGHQKLIKRAQEVAKKKSLPLMVLTFDRHP KEIYLGRTDFEYLDNLPEKAEKMEKLGVDYLAVAPFTEGFSKLSPQEFVDQVIIKLKADA VVAGFDYTYGPKDIANMENLPYFAKNRFEIVILPEQTSGGCKIGSTAIRQAIRNGNLELA TNLLGSHYIMSGIVGHGLRNGHKLGFPTVNLVLNDRKVIPKIGVYATRTLVHGKWYDSMT SVGYNVTIQTGKKIYIESHLFDFDEDIYDEEISIEWYHYTRGEIKFSSLDELKEQLIKDE KEIRKYFKNIKN >gi|297148814|gb|ACGQ02000002.1| GENE 433 502987 - 503724 702 245 aa, chain - ## HITS:1 COG:BS_truB KEGG:ns NR:ns ## COG: BS_truB COG0130 # Protein_GI_number: 16078729 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Bacillus subtilis # 1 232 1 234 309 229 49.0 3e-60 MINGILVINKSKGMTSGDVVYKLRKILKTRKIGHAGTLDPEVEGVLPIAIGQATKLIELM HERPKSYTGRGLLGFSTDSYDTEGKVLQRKAVSEKIPLEEIQKGMNSFLGKIDQVPPIYS AVKVNGKRLYEYAREGIQVTRPVRSVEIFKYKLLEPVNYQNEQEEFGFNIECSKGTYVRS LVNDLGEKLGYPAVMTYLQRTSSSGFNLEKAVKLEELEANPELVLKYILPIDSFFADYET IDMSE >gi|297148814|gb|ACGQ02000002.1| GENE 434 503762 - 504118 421 118 aa, chain - ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 3 114 6 117 118 102 46.0 1e-22 MKHRIGRVEGEILRELSKILQKKIRDPRLSDVTLTAVECTNDFSYATVYYSLLTEDGNKE KEVAEGLEKAKGLMRHLLGQELTVYKVPELIFKRDTSVQYGSKIDKLIAQLKKQENDR >gi|297148814|gb|ACGQ02000002.1| GENE 435 504130 - 506829 3208 899 aa, chain - ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 113 899 7 782 782 699 52.0 0 MAKQRIYELAKQLGLNNKVLVDKAKELGFNIKNHMSSLSDTEVNELKNKVKPSTPAKSQN DEKKTEKKDNKIKLSVSSIRRPASQSKNHSKHQHSDQAKKRSNDSSNKRRNRHESNKKQN NKSPKVNKARDLLAELQQKQRAEETTLAKESEKARKIWHEEKNKVQNEDTENQNSQKKDT NEVTNQPEEKKTKKVLGPKILKPSPARNRPKTEENKQKQNQKSKPKRKPAMNRTPQIPVM PEESVKPDSRRNGNGHGRNTGKPGRKGRDNNNFDRRNEHSDKMERRKRKNKHNNHAEEVR KPKTVRKERPLPEVLVFEEGMNAQDLGKLLHREPAEIVKKLFLLGVMTNQNQSLDKDTIE LLAAEYGIESKEKVHEDISDIDNLYQKEVEASKESKHQESRPPVVTIMGHVDHGKTTLLD RLRHTNVSEHEAGGITQKIGAYQVRVDDRLITFLDTPGHAAFSNMRARGAEVTDIVVLVV AADDGVMPQTIEAIDHAKSAGVPIIVAINKMDAPGANPSHVTEQLMKYNLIPEDYGGDTI FVKISAKTGDNVEELLQMILLQADVLELKADPHQKAIGTVVEARLSRGRGPVADILVQQG TLEVGDPIVVGNTFGRVRVMTNDKGRRVKKATPSMPVEITGLNDVPESADKFVVFEDEKT ARAVGEQRAQNALQKQREKVQHVTLDNLFDTMKRENMKEVGIVLKADVQGSVEALSQSLE KIEVEGVRVNIIHSGVGAINDSDVTLASASNAFIIGFNVRPTATAKSQAESDEVDIRSYS VIYKAIDDVEAAMKGMLEPTYEEKVTGNLTIRETWKVSKVGTIAGAFVDSGYIHRDSGIR VIRNGVVIYDGQVASLKRFKDDVKEVKQGFDCGLTIENYNDLKIDDELEAYEMQEVKPK >gi|297148814|gb|ACGQ02000002.1| GENE 436 506834 - 507145 482 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526109|ref|ZP_03956158.1| ribosomal protein L7/L12 [Lactobacillus jensenii JV-V16] # 1 103 1 103 103 190 99 1e-46 MHNREKTINFLGLIQRAGKLVSGTDMVISSIKARKVKLVIIASDLSQATRQEVVSLAQKN SLPIIDEFSELEISQAIGKARKVLAVSDLGFSKALQKKLNEGV >gi|297148814|gb|ACGQ02000002.1| GENE 437 507146 - 507394 323 82 aa, chain - ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 3 78 19 94 108 78 53.0 3e-15 MQPKKDLVRIVINKEKEVSVDPTGKKPGRGAYVSLEPEKITEAQKNKILDRSLGTKIDDS FYKELFEYVDHQKARKELFGDK >gi|297148814|gb|ACGQ02000002.1| GENE 438 507452 - 508558 723 368 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 352 9 361 537 283 44 2e-74 MTKEMLEAFATLETEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVDLDERKGNFKVMA IKTVVDEVQDDRLEVSLKDALEINKAYEVGDEIKFEVTPKDFGRISAQTAKQVIMQRLRE AERNHIVSEYSQYQDELVTGVVERHDNRFVYVMIDKVEAVMPRGDQMPNEVYNPQDKIRV LVTKVGNDTKGAQIVVSRTAPDMVKRLFEQEVPEVYDGTVQIVSVAREAGDRTKIAVKSD DPNIDPVGTCVGPKGARVQNVVNELGGENIDIVKYEDDPADFIANALNPAEVIAAQFGED EDEKSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESQVEFVDEDNGNSENAGE EKPADNEE >gi|297148814|gb|ACGQ02000002.1| GENE 439 508579 - 509088 493 169 aa, chain - ## HITS:1 COG:lin1358 KEGG:ns NR:ns ## COG: lin1358 COG0779 # Protein_GI_number: 16800426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 12 169 1 155 155 132 44.0 3e-31 MLTLFSTEEDFLTKIIDLVTDLVTPLAEKRGDELVDVEYVKEKNQYYLRIYVDRGESGID IEEIAALSEIVSEELDKLNPDPFTEPYMLELSSPGLERPIKNERDWNKALNKYIHVACYQ KIDGQKSFDGTLLSRDNKKITLKIKIKTRTKELEIPIGAIANARFAIEF >gi|297148814|gb|ACGQ02000002.1| GENE 440 509151 - 513470 3705 1439 aa, chain - ## HITS:1 COG:BH2418 KEGG:ns NR:ns ## COG: BH2418 COG2176 # Protein_GI_number: 15614981 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus halodurans # 8 1439 12 1433 1433 1474 51.0 0 MADSNKLFLRFLKQIKFPNSFSDNDLLEKGKIENVDVYGKKRKWDIHVFFDTPLKFDTYE ALIKLTEQEFSPFVDVNIMISTADGSDRYLPDYWSFVVSHTENMTVMARECLSSKKPVKV ASDWIIGVETPMLANSISQSDLDNLSFDLRRYGFFNIKLKLQVKNQNEEANLASLEQLEQ LQAEHEKSMNEAFKNIPPKPKRVAPNNNRQTREKNFGKADIPASEIIGMKEIEDGMRNIV IEGNIFNIDSHELKSGAYIFSGEITDYSDSIAFKKFVKDKEQIEMLKGIKPGVWARMSGS ALDDQYVHDVVFNINNFKIIEHIGRTEKYEGDKKRVELHLHTIMSQLDATNTATDFISTA KKFGQKAIAITDHGDVQSFPEAYSAGKKQEMKILYGLEANMVDDHALLVLNPAPMTYENR EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIERFDEFINPHHPLSETTINLTSITDEM VSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGFVNAALRRSGLKEITQPVVDTLEVSRL LHPEQTKHTLDSLCKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNDKFEQDDLGKMNDY AKFGQVYKRAKPAHMTVLALTQKGLKNMYKLVSLASTQYFYREPRTPISELRKYREGLLF GSGCWKGDVFITMMQKGYDEAREKAKFYDFLEVQPPAAYSQLIADELIKDENQLEEILKN IYKLGQELNIPVVATGDCHYLNPEDKIYREILIAAQRSNPNRNKPQPKLHFYSTQEMLDA FSFMGEDIAKEIVIDNTNKIADEIEDIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGK PLPKIVKDRIELELNSIISNGYAVIYLISQKLVAKSNKDGYLVGSRGSVGSSLVATMSGI TEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPDKKCPECGTELVKDGQDIPFATFLGFH GDKVPDIDLNFSGDYQPVAHNYIRVMFGPANSFRAGTISTVADKTAYGYAKHFEEERNLN LRSAELDRLATGTSGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLNAAWLTTHFDF HSIHDNILKFDILGHDDPTMIRMLQDLSGVDPMTIPPDDPGVMSLFSGTDILGVTPEQIA SKTGTLGVPEFGTKFVRGMLEETNPTTFSELLQISGLSHGTDVWLGNAEDLVNNGTCKLK NVIGCRDNIMMDLIHWGVKPEVAFSTMESVRHGRGISDDDMAVLKKNNNIPDWYIPSCLK IKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSHGKNSVKAAIK KIQDQGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIIDDHTILAPFNA VPGLGDNAAKQIVAARAEQKFLSKEDLRTRGKVSQTIMDYLEVNGVLEGMPEQNQLSLF >gi|297148814|gb|ACGQ02000002.1| GENE 441 513480 - 515177 2100 565 aa, chain - ## HITS:1 COG:BS_proS KEGG:ns NR:ns ## COG: BS_proS COG0442 # Protein_GI_number: 16078720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Bacillus subtilis # 1 563 1 564 564 597 52.0 1e-170 MRQSNFFMPTLKEAPADAVAASHKIMIRGGYIRQVTAGVYSYLPLGYRVLRKAERIIEEE MDRINVPEMIMPHLLPATLWQESGRYYKYGDEMFKLKDRHGRDSLLGPTHEETFTEIIAK NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATKEQLDKQFDDQKAA YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID TFKQEPEELKPMEKVATPGCETIEQLTEFLRVPATRIVKSILYMADDQKILVLIRADKQI NEVKLGHLLDANEVREATAEELVNVTGSEKGGVGPVKADWADKIIADETVKDLYNIVVGA NETGYQFQNANLNRDFKVDEFSDIRTANEGEPDPVDHLPLQFTTSIEVGHIFKLGTYYTE TMGADFLDQNGKAQPVIMGSYGIGVTRMLSAAVEQNLTEHGVAWPKEIAPFALHLIQMKM KDEVQTKLAESLYAKFSDKYDVLYDDRNERAGVKFADADLVGAPLRITIGKKAADGIVEV KRPLDEKASEVTLAELEALVAKELD >gi|297148814|gb|ACGQ02000002.1| GENE 442 515197 - 516450 904 417 aa, chain - ## HITS:1 COG:lin1355 KEGG:ns NR:ns ## COG: lin1355 COG0750 # Protein_GI_number: 16800423 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Listeria innocua # 1 415 1 419 420 321 41.0 1e-87 MTTVLIFLVIFGLLVFVHEFGHFFVAKKSGVLVREFSIGMGPKLFQTRKKNTSYTVRWLP LGGYVRLAGKDDISTIDPGTNVILALDEAGKVVRIDASESDITISGIPLQVTKADLVKDL TIQGYENGDESKEFKYSVDHDATIIDNTGTELTIAPEDTQFQNAKIWQKIATNIAGPLMN IILGFVIFIIWSISTVGPSTTTVARTLEDSPASTVLKKNDQLVAVNGKKVTSFENFSERV AENKSKTMQLTIKRGNKTKTVSLKPKLVKYNGEKAYQIGIYAKSDERFSVKLARGWNMAV NTTGLIFKAVGNLISHFSLNKLSGPVGIYSQTSQVSKFGISAVVVFLAMISINLGIMNLL PIPGLDGGKLLLNLVELIRGKPISEEHETAVEIAGVVFLLILIILVTGNDIYRYFIK >gi|297148814|gb|ACGQ02000002.1| GENE 443 516453 - 517259 905 268 aa, chain - ## HITS:1 COG:lin1353 KEGG:ns NR:ns ## COG: lin1353 COG0575 # Protein_GI_number: 16800421 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Listeria innocua # 1 266 1 261 262 211 47.0 2e-54 MKQRTITAVIALILFIPIVVAGGYWIDWLAAALAAVGISEIFLMKKQILLSIDFLLALLA TLTWTVPKTFFNVFPKEVTRPGIYFTMVMLLLTWTVLSKNKTSFDDVGVYTLASLYIGTG FHYLAAIRNIDHGSMLGLALLGYVFVVVWSTDIGAYMIGKKFGKHKLWPVISPNKTWEGS IGAVVCAIAFSAIYINVVPLVKDYSYLIWTSAILSIVGQMGDLVESAYKRYYGVKDSGKI LPGHGGILDRFDSMLFVLPVIALFFIKG >gi|297148814|gb|ACGQ02000002.1| GENE 444 517271 - 517984 673 237 aa, chain - ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 9 237 26 252 252 281 56.0 1e-75 MTKEKELNHLAIIMDGNGRWAQKRHLPRVMGHKQGMQNIEKIALAANEMGVKVLTLYAFS TENWGRPTDEVSYLMKLPITFFDKFMPKLMENNVKVNIMGFLNELPDKTLAVTQKAMEDT KNNTGMILNFAFNYGSRREITTAIKKIAKQVKNESITLEDINDKLVNQELLTANLPYPDP DLILRTSGEQRISNFLLWQLAYSELAFTDKYWPDFNEEDLKKVIMDFQGRDRRFGKL >gi|297148814|gb|ACGQ02000002.1| GENE 445 517988 - 518545 921 185 aa, chain - ## HITS:1 COG:L0367 KEGG:ns NR:ns ## COG: L0367 COG0233 # Protein_GI_number: 15673991 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Lactococcus lactis # 1 182 1 182 185 193 60.0 1e-49 MTNDVIAKAKENMDKSIAVYQKELGNIRAGVANASLLEGVKVDYYGVPTPLTQMSSVTIP EARVLLVTPYDKSSLDNIEHALLASDLGLTPANDGNVIRLVIPQLTGERREEIAKQVGKQ AEQAKIAIRNVRREAMDSLKKQEKNGDITEDEQKRLEKDVQKVTDDATKRVDQLADEKRK EITKG >gi|297148814|gb|ACGQ02000002.1| GENE 446 518545 - 519270 945 241 aa, chain - ## HITS:1 COG:L70624 KEGG:ns NR:ns ## COG: L70624 COG0528 # Protein_GI_number: 15673992 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Lactococcus lactis # 1 237 1 237 238 325 67.0 6e-89 MSQVKYKRIILKVSGEALAGPKGVGIDPIVISHLAKEIKSIHNLGVEIGVVCGGGNMWRG ETGAKLGMERSQADYMGMLATIMNGLALQDGLEHVGVPTRVQTSIEMRQVAEPYIRRRAV RHLEKGRVVIFGGGTGNPYFSTDTTAALRAAEIDADVILMAKNGVDGVYSADPKIDPSAT KYDELTQLDVISKNLKVMDRTASSLSMDTDIPLIVFNVNTEGNIKKVIEGENIGTVIRGG K >gi|297148814|gb|ACGQ02000002.1| GENE 447 519398 - 520273 581 291 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 286 1 275 283 228 46 4e-58 MAKITAAQVKELRERTGAGMMDSKKALVEAEGDMERAIDILRENGVAKAAKKSGRIAAEG LAEFAFEGNTAALVEVNSETDFVASNDKFINLVNDITKAVLAAKPKNMEEALNAPLADGT IESATTNLTAVIGEKITFRRFKLINKNDDEVFGAYKHNGGAIVALVTLKGGNEEAAKNIA MHVAAINPEYLNKDSVPADELERQKAVFTKETENEGKPANIVPRIVEGRVNKYLSEICLV DQAYVKDSDMTVEAYVKSQNATVVNFERFEVGEGIEKKQEDFAAEVREQMK >gi|297148814|gb|ACGQ02000002.1| GENE 448 520307 - 521089 1328 260 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526097|ref|ZP_03956146.1| 30S ribosomal protein S2 [Lactobacillus jensenii JV-V16] # 1 260 1 260 260 516 100 1e-144 MSVVTMKQLLEAGVHFGHQTRRWDPKMKPYIFTQRNGIYIIDLQKTIKMLDDAYNYVKAV AQNDGVFLFVGTKKQAQEAIKEEATRAGQYYVNQRWLGGTLTNWTTIQSRVKRLKQLKAM SEDGTFDLLPKKEVALLTKEMDKLQRFLGGIEDMPRIPDVMFVVDPKKEKIAVHEANKLG IPVVAMVDTNTDPTPIDVIIPANDDAIRAIRLIAGAMADAVIEGKQGEDDENVEQEMADK AAESTDEKSMEEVANEADED >gi|297148814|gb|ACGQ02000002.1| GENE 449 521259 - 522269 507 336 aa, chain - ## HITS:1 COG:SP1536 KEGG:ns NR:ns ## COG: SP1536 COG4123 # Protein_GI_number: 15901380 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 3 241 7 244 249 187 39.0 3e-47 MKLKNGEKIDHIYSNQIQIIQDKEAFSFSLDTILLAAGCLDYIKDRDQIVEFCAGNCAAS IYLAHRTEAHFKTIEIQDHAYDQGKRSVELNHLENRIECFLGDVNDATKFVGRQNNMVLV NPPYFKVAPGHVVNPNEKKALARHEILVDLEHIILQASQVLKNKGRLVMVHRPERLGEIC YFCQKYNLPVKKIQPYTSSSHKESNLIVITASKNGASDGLILKSPIVTQTSDGHYNPEIN QFLLAQEAELKNKYYFYVLLCNDNTLYGGFTTDLKQRLNAHNSGKGAKYTKSRRPVKMIY HECFNDKQQALKREYWFKHHSRSWKEQFLKDHNVTI >gi|297148814|gb|ACGQ02000002.1| GENE 450 522333 - 522947 776 204 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 198 1 207 249 182 42.0 3e-46 MFYKIIRPIVRFIVWILNGHLHVHNKERLPEGTYILVAPHRTWWEPILFALATSPMTYMF MAKKELFKNPILSFILRHAGAFPVDRKNPGPSALTIPVKGLRKDQDSLMIFPSGTRHSAE LKSGAFVIAKMSGKPLLPVVYQGPLTFKDFLKRKPLEVVIGNPITIDRKSKIDQETTPIL YKQLEDAWAKLDHDQNPNFKYIPK >gi|297148814|gb|ACGQ02000002.1| GENE 451 522977 - 524761 235 594 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 366 584 33 257 329 95 31 6e-18 MNKDYESIWSKAISFKEQKQIFKRIFKFVLLYKVEFFASLLGALLVSVINILLPRFLQYY MDHFLAHKNATWQIIYGVAAIYLLGLISKALLQFFYEYYYSLAGEKTLEKVRRVLYQKLH QLGMRYFDQNPAGSILSRITNDTMTLSTFLSMFSAVMIGIISMITAFVAMYYTDKIAGLI ILAFLPLLLLVMWLYSYYNSRLYREYRERNSLINTKLNESITGINVIQQFRQEKRIQAEF EDITNAQLKTRMKLVKMNALLLSPLTSLLYNVAIAVSLLYFGFPTRSVFVAAGVIYAFSN YIQSFFNPISSMMDSLTSFTDGIVAGKRIFKILDETELEPQQSVDSNAKIELGKIEFKHV SFSYDGKNDVLHDISFTLKPGQTLGIVGHTGSGKSSLINIMMRFYEFHSGQILLDGHDIR NFSPAELRKKMGLVLQEPFMFYGDIKSNIRLYNKEISDEAIVKAAKQVQADSFIEELPDK YDSKVIEGGSEFSSGQRQLISFARTLVTNPKILVLDEATANVDTETETLIQNGLKKLRQG RTTLAIAHRLSTIKDADKIIVLDRGKIVETGNHEELLSKKGYYYDLYRLQQERG >gi|297148814|gb|ACGQ02000002.1| GENE 452 524754 - 526508 179 584 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 354 554 295 502 563 73 27 2e-11 MDIFIKLSWFFKKYKKRYFFGILFLILTSFVNLIPPLALGRMAELLNQGKISWMEFIINV LGILVAALLLYVFRFGWRSQLWGGAQILARDLTTKLYWHFLKMDRTFYQRHRTGDLMAHA TNDISAIQYVAGDGILALVDAVFTGGTTLIAMMIFVDWRLTLIAMIPMPLLALMARFLGT KLHEAYRNSQEAFSQLNNKTQESITGIKVLKTFGQAQEDIAAFNKMTHDTIRINKRVFKI DSLYDPLTTLIIGFTYVITIIAGGQMVQSNEINIGQLVSFVAYIGSLEWPMFAIGYLFNL IERGSASYKRVMSLLSEKSLIKDQADHQVATITGDLEVNIDQFKYPDEKNRLALQNINFN LQPGQTLGLVGKVGAGKSTIIELLMRDFDNYQGQIKLAGKNIKDIALDSYLSQISYVPQK NFLFSVSIADNIRFAEPEATLKQVRKAAQEAALDSDIMLFPNKYDTLVGENGVSLSGGQK QRLAIARALIKDSQILILDDALSAVDAKTEKNILNNLQKCRKDKTTIIAAHRLSSVMNAD LILVLKNGQVIERGTHQQLLAEDGWYKEMWDRQELEKKVGEGIE >gi|297148814|gb|ACGQ02000002.1| GENE 453 526596 - 526817 378 73 aa, chain - ## HITS:1 COG:SA1178 KEGG:ns NR:ns ## COG: SA1178 COG3763 # Protein_GI_number: 15926924 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 67 1 67 80 62 61.0 2e-10 MNLGLAIILIIAALLIGLVGGFYGARAYMKKYFQENPPINQDMIVAMMSQMGQKPSAKKV NQVMNMMKHQQKN >gi|297148814|gb|ACGQ02000002.1| GENE 454 526835 - 527083 288 82 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01293 NR:ns ## KEGG: LCRIS_01293 # Name: not_defined # Def: hypothetical UPF0291 protein # Organism: L.crispatus # Pathway: not_defined # 1 82 7 88 88 74 75.0 9e-13 MDKKEEERVRNRINELYHKKQTEGLTPEEQAEREELHKKFIANFRAGFKQQIENLVLIDK NGKEITSEKAKRAQRRKGLRKD >gi|297148814|gb|ACGQ02000002.1| GENE 455 527222 - 527857 692 211 aa, chain + ## HITS:1 COG:BH2356 KEGG:ns NR:ns ## COG: BH2356 COG1974 # Protein_GI_number: 15614919 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Bacillus halodurans # 4 209 3 204 207 145 43.0 8e-35 MTLKEDSNQFKILEFIYNTVEDRGFPPTVREICEAVDLSSTSTVHGHLNRLVKTGYLFKD PSKPRALEITQEGLNALGVDPGIPYLGTVAAGDPDTALADDSGAEYYVQRPERFDKRDPL YMLKVDGMSMIERGIYPDDLVIVRHQNVAAQGDLVVAYTENNGTTLKELVRDRSSKQLRL KAYNKEMYPDELLPDTNFKICGKVVALNRDY >gi|297148814|gb|ACGQ02000002.1| GENE 456 528266 - 529267 930 333 aa, chain - ## HITS:1 COG:BH2219 KEGG:ns NR:ns ## COG: BH2219 COG1609 # Protein_GI_number: 15614782 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 3 306 4 306 335 164 33.0 2e-40 MTSMQEIADKAGVSRATVSRVLSNHPSVKADTRKKVMYWVKKMNYEPNMIAQSLAGNSTN LIGVIVPEIAYPFFSEIIEAIERQAFYEGYSIVISNTNRKIEKEKNIIAEYKKRKVDGII AVPVSERESVSVYKKISIPVTVITKKINNFNSIYISHYKGGEQIAKHFINSGFKKIGYIG PISNSTSARKFAGFKDYLKNQGVQLTDIIECNPPKNMNATLVAESVKEYISNKEIGSEVF FANDDISACEAINAFKMQGYDIPNDIKIAGFDNTLLAREMNPRLTSLAQPLEAIGKKAVQ VLINQINYHTKPHMYEMESYVVERESTLNLNIK >gi|297148814|gb|ACGQ02000002.1| GENE 457 529480 - 531660 1086 726 aa, chain - ## HITS:1 COG:BH2223 KEGG:ns NR:ns ## COG: BH2223 COG3345 # Protein_GI_number: 15614786 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Bacillus halodurans # 2 707 3 712 748 620 44.0 1e-177 MIYVIEKNDEKYYFLNTNNTSIVLLKNKYDYLFILHWGSLISPTNLDYVLKELNRASYLA DANGVKDFKLEQMPQIYPSYGYSDLREPAFSIRYQDGSRITDLRYDSYKIYKTKKKLKGL PTIISKESESIDLILIDKIKKIKITLTFSVFDAYDAITQSVKIENLSNETCYIEKVCSAS IDLLFSDLDMFQLNGAWGRECHINKRHLVQGSQSISSARGASGHGQNPFIALATRGTNEE YGEIFALNFVYSGNFLGQVEVDMHKNTRVQLGINPFDFEWILDPSQSFQTPEVVMVYSNE GLGKMSRIFHKLYRNTLASRKYLNSTPPILLNSWEANYFDFTKESLLNLAEKSSEIGVEL FVIDDGWFAKRNDTTSSIGDWVPNQVKLGGNLDTLINKIKKNKIKFGLWFEPEMVSPNSN LYRLHPEWVIQVKNRRIEESRDEYVLDLSNPAVCEYITEILSNFLSVYSIDYVKWDMNRN FTNLGSTYLSSERQKEQAHRYILGLYSILENLTKRFPNVIIEGCAGGGGRCDPGMLYYMQ QIWISDDTDAIERLPIQYGTSLIYPSVSLGCHISAVPNHQTNRITNLDTRSTVAMWGNLG LELDLNNLRKDELEILKNKILFYKKIRSIVQLGDLYRLQGLDETNEYAWMYISEKQDEIL VSYVQIMAQPNTVAKRLRIPYLDVNFNYLDVENNRVYKGDELYALGVSKGSCKYDGYSKQ WLFRRI >gi|297148814|gb|ACGQ02000002.1| GENE 458 531674 - 533086 1452 470 aa, chain - ## HITS:1 COG:SPy1815_2 KEGG:ns NR:ns ## COG: SPy1815_2 COG1263 # Protein_GI_number: 15675645 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 101 459 10 362 385 284 47.0 2e-76 MAYDYKKIAKSVIKAVGGYENIKSAQHCATRLRLIVDDREKINEEEVGKIEGVKGTFFTG GQYQIIFGTGHVNRVFSEVIKLGVGETTVAEAKKAKLTGKNKFQKAIRTFGDVFVPIIPV LVATGLFLGLKGALFNNNFLSLFGMTIKEVPKILLVLIDVLSATTFAFLPAIVCWSTFRV FGGSPILGLILGLMLVNPALPNAYSVADPSSGITPLYLFGIIPVVGYQGSILPAFVAGWI GSKLEIKLRKLVPATFDFMITPFLVLLIMLLVSLLIIGPILHGVELILLSFMKTALHLPF GIGGLIIGFFWSIITLTGVHHISNMLEISLLANTGFNPMNAILCMCGFSSAGVCLAIALK AKKKEVRAIGPSATVSALLGIGEPALFGVLLRYKVTPFILSCCINGIAGMLAMIIGLQGT GNGITTIPGILLYVYSPKQLILYIVLAAATFITAFITTWLFAVPKEVMSE >gi|297148814|gb|ACGQ02000002.1| GENE 459 533372 - 535318 2468 648 aa, chain - ## HITS:1 COG:SA2167_2 KEGG:ns NR:ns ## COG: SA2167_2 COG1263 # Protein_GI_number: 15927957 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 99 470 1 385 385 323 45.0 5e-88 MAMDYKKVASEVVAAVGKDNLVAAAHCATRLRLVLKDFDAVDQAALDNNADVKGTFKTNG QYQIIIGPGDVNFVYDELVKLTGVQEASTEELKKIADKGKPFNPVMAFIKLLSDIFVPII PALVAGGLLMALNNFLTQPGLFGPKSIVQMNAAVKGFSDIIQLMSAAPFIFLPILVAISA SKRFGANQFLGAAIGMIMTSPDLGATAKYWDILGYHVMQTNYKYQVVPVLVAIWVLSILE KRFHKILPQAVDFTFTPLLSVMITGFLTFTVIGPVFKEVSDLLTQGIVWLYDTTSFIGMG VFGLTYSAIVTTGLHQSFPAIETQLVTEFAKNHVGSGDFIFVVASMANVAQGAATLAIYF LTKNKKMKGLASSASVSAFLGITEPALFGVNLKYKFPFFCALIGSGVAAMVAGLTKVIAA SMGAAGFIGFLSIYPSSIPFYVMCEILSFAVAFALTFMYGKKNLKEETVDMAPVAATEAT EKQTAVEQKVEKQLSLSDEVIASPVNGKEVSLTSVHDQVFSAKLMGDGAAVIPADGNIYS PVDGEVTVAYETKHAYGLKSDDGAEILIHIGIDTVNLKGEHFESFVKQGQRIKKGDKLGT VDLAAVKEAGYDTTVMVIVTNTNDYASVDRVQNDKVKAGDNLIAVTAH >gi|297148814|gb|ACGQ02000002.1| GENE 460 535558 - 537009 1786 483 aa, chain + ## HITS:1 COG:SP1724 KEGG:ns NR:ns ## COG: SP1724 COG1621 # Protein_GI_number: 15901557 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 1 480 1 477 484 471 46.0 1e-132 MEWSTEKRYLPYEKWSAKTLLELQSQASNSPYQLHYHIRPKSGLLNDPNGFSYFNNEWHV FYQSYPFGPVHGLKSWEHCVSKDLVHWKDLGTAIYPDTELDSHGAYSGSAKVIDDKLFLM YTGNARDTEWVRHPHQMGAFMDKNNHIEKLPNSLIEQPQHTTDHFRDPQILEHNGKYYCI LGAQDKATKTGKIALFEAKDIKGPWHDLGYIDFTNEEMGYMIECPNLVFIDEKPVLIFCP QGLDKAIVKYENIYPNMVLVGDKFDFTSAQFDSKHSIQNLDDGFDVYATQPFNAPDGKVY ALSWVGLPDLTYPTDIENWSGCYSQVKELSLKDGQLIQKPVSTIKNLRQEEVNFTGELDT KNQYELKLEVAASQKTTLHIAANETNTESLKLHIDTANGELILDRQNSGFTVNEKYGTER AIKLPQNTTLDLDIFVDHSLIEVFVNNGEHVLTARFFPKKGSNKLLLDENIKFKGQYWEM ADI >gi|297148814|gb|ACGQ02000002.1| GENE 461 537009 - 537989 774 326 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 326 1 321 321 295 48.0 8e-80 MSVKLTDVAKLANVSPTTVSRVINNYGYISEKTRKKVFSAMNELNYQPNSLARSLQGKKT RLIGAIVPSLTNPFFAELVSRIEELLNRKDYKLILCNAVQDSSHKERDYLNMLKANQVDG IISGTHNLDITEYQETGLPIVSFDRNLGPDVPVVSSDNYQGGWVATNSLINSGCKKVAFF GNIKGSNNPTDLRLKGYHDAIIEHGLQEILVPMNFYESANLKKMAFQKLLSKHEIDGAFF TDDFSANLFWQYSRFNHFKDCERIKVIGYDGTSIMRQLNPDLSTIAQPIEEIANLLVDLL IKRINHEELSDSNYVLPITLVKGNSI >gi|297148814|gb|ACGQ02000002.1| GENE 462 538020 - 538667 785 215 aa, chain - ## HITS:1 COG:SPy0506 KEGG:ns NR:ns ## COG: SPy0506 COG2039 # Protein_GI_number: 15674611 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 215 215 241 55.0 8e-64 MKILVTGFDSFGEDRINPALEAVKRLPDNIAGAKIIKLEIPTKFNISAEVVKEAIENYKP DYVLNVGQAGGRFAITPERVAINLDDGRIADNAGYQPLNQTIQSDGATAYFTQLPIKAMT KAIREVGLPATVSNSAGTFVCNHIFYQVQYQRAKFFPDIKAGFIHIPYLPEQVISKPQMP SLSLADDIKGLIAAISAIVERDGQGDINTIEGSIH >gi|297148814|gb|ACGQ02000002.1| GENE 463 539106 - 539438 424 110 aa, chain - ## HITS:1 COG:SA0887 KEGG:ns NR:ns ## COG: SA0887 COG5294 # Protein_GI_number: 15926621 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 5 106 2 101 106 79 46.0 2e-15 MSTFKKVMLTVTGVIVVAIFAFFFVHTPQTDRFNPFIQKTTSYAKVKKGTQNYYQVQAIN PKTGENLSYKLSEVGGYDNSKEYIEITHKGQYVEKISYISKEKFEKAKQK >gi|297148814|gb|ACGQ02000002.1| GENE 464 539435 - 540103 270 222 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 212 1 217 245 108 34 5e-22 MIKLKNISKSFGNHSIFVNVSADLHAGKSYAIIGKSGSGKTTLLNIIGGLESASSGQVEI DGQVVKEANLAKFRKDYFGFIFQNYGLIDTDTVEQNLLIGLANQKISKKVAQEKLKSVLK LLDLDYLNLSQKVFVLSGGEQQRLALARIILKKPKIIFADEPTGSLDPDNAQIILKHLLN DFGSDATILVATHDPQVWKKCDYIIQVQEKKIKLIKNEGEGQ >gi|297148814|gb|ACGQ02000002.1| GENE 465 540118 - 542097 1526 659 aa, chain - ## HITS:1 COG:SA0886 KEGG:ns NR:ns ## COG: SA0886 COG4652 # Protein_GI_number: 15926620 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 12 626 7 623 654 117 22.0 7e-26 MFKTIKLSLFTIISIVAFFLLSTVIRQYDLETIPGEQNVIKVYGDKQKANKAQVFFELKK VARKGHYQLTLIRQNTINNSVTKSIYVFNSDLPYNASLYRNSAVKQFSSKEVELLDLKGE YYTNASSSEFVKLQSKLTDYGLKFEVGKDDFWKVAFFNENILNYLLIFISVFAIFFTVSV MEKVANLKKYAILRLNGWNFFKILVRDLLDISRPFAIILSALIIIFGVVTSWEMNLTGII FFAKYGLILELVLLIFALLLELLSYFPLLLAKLGAAIKGQTYSAALTAVSYLLKIVLLIV VFFNLFILYSSVKNLHDDQNIMNMWISRGSGYTIQYGYVDPQDRAEEDKLGNLTKKLVAK NSDVIISRTNQEYHPASNNFDVTNGNVLIINKNFLKYNKLEDLTGKDLYKLRYQAKTLYV FVPITHKSKLSEIKKNVVDYTSFQQELSGRKGQKLNFEYILIKNPGQVFNYLIGKEISDS ISTNPVFIVDSGLLSNDFYFSSATKGMIQFKNLQKLKTQLSQLGLQSYIVGITDAKTRLS NFNITISRKLTILSLTIVLSIGQLFFLMIFIASSFLQKERPRMAIRKVFGISNYDLVLKF TSFNLLIDIGVAILVAIFCGINWILIFGLIAYLILETSAIIVLAMRAERGLLTTINHGN >gi|297148814|gb|ACGQ02000002.1| GENE 466 542251 - 542598 578 115 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526078|ref|ZP_03956127.1| 50S ribosomal protein L19 [Lactobacillus jensenii JV-V16] # 1 115 1 115 115 227 100 1e-57 MDPLIQELTKEQLRDDIPAFRAGDTVRVHVRVVEGTHERIQLFEGVVIKKKGVGISATYT VRKISSGIGVERTFPVNDPRVAKVEVVRHGRVRRAKLYYLRNLHGKAARIREVRR >gi|297148814|gb|ACGQ02000002.1| GENE 467 542705 - 543436 1063 243 aa, chain - ## HITS:1 COG:SP0779 KEGG:ns NR:ns ## COG: SP0779 COG0336 # Protein_GI_number: 15900673 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 242 1 238 239 259 55.0 4e-69 MKINVLTLFPDMFTPLQVSMLGRALEDKKWDLNLVNFRDFTTDVHHHVDDTPYGGGAGMV LQIMPIKKALDSLEKKGKVIITAPQGKTFNQKMAKRWADEEQDLTFICGHYEGFDQRVYE MADEVVSIGDYVLTGGELPTMSMIDATVRLLPGVLGNSASAVEESFSHGLLEYPQYTRPA EFEGMKVPEVLMSGNHGKIAEWRLKEALRNTLLRRPDLLETREFTPEESKLLTEIKLDLE NKN >gi|297148814|gb|ACGQ02000002.1| GENE 468 543426 - 543938 614 170 aa, chain - ## HITS:1 COG:SPy0847 KEGG:ns NR:ns ## COG: SPy0847 COG0806 # Protein_GI_number: 15674881 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Streptococcus pyogenes M1 GAS # 1 170 1 172 172 132 41.0 3e-31 MQFYDVAQVLTSHGLKGEVKVKVITDFPEQRFCEGVKLFIKDDMRQLTVESGRPFKQFWL VTFKEIKDINEAESLFGKTLVISEEDQEQLPEGHYYYHQIIGLSVVDNETDELIGKVTDI EAPGANDIWQVTPKVGKPFWLPYVPSFVKSVNLDKEEVRVELMEGLRDED >gi|297148814|gb|ACGQ02000002.1| GENE 469 544009 - 544281 463 90 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526075|ref|ZP_03956124.1| ribosomal protein S16 [Lactobacillus jensenii JV-V16] # 1 90 1 90 90 182 100 2e-44 MAVKIRMRRMGSKRKPFYRIVVADSRAPRDGRFIEEVGYYNPVSQPKELKLDEEKVFAWL QKGAQPSDTVRSLLSGAGLMQKLHDAKYNK >gi|297148814|gb|ACGQ02000002.1| GENE 470 544371 - 545798 1919 475 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 456 1 457 523 520 62.0 1e-147 MAFENLSERIQKALKNLTGKGKVSEADINAASREIRLALLEADVNFKVVKDFIKKIKERA LGQEVQGSLTPGQQIIKIVNDELTKMMGEEAAKLNKAPHIPTIIMMVGLQGTGKTTTVGK LAKYLMDTEKARPLLIAGDIYRPAAIDQLKQIGDQLSVPVFSEDEKDVAKIVADGLAQAK EAKNDYVLIDTAGRLEIDEALMEELERVKEVAKPDNIVLVVDAMTGQVGAQVAETFDKRL DVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSELEGFYPDRMASRILGMGDV LTLIEKAQRDYDAKEAEKVAQKMRENTFDFNDFIDQLEQVQKMGPLDQIMKMIPGMANNP QLKNFSIDEKQIAHTKAIVYSMTEAERQDPDLLNPSRRRRIAAGSGRPIMEVNRMIKQFK QSKDMMQKITSGNTKALAGLPGMDSPMAQAAMRRMGKQFKKGKKKRLKHIKRFKS >gi|297148814|gb|ACGQ02000002.1| GENE 471 545803 - 546138 398 111 aa, chain - ## HITS:1 COG:SPy1201 KEGG:ns NR:ns ## COG: SPy1201 COG2739 # Protein_GI_number: 15675166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 77 4 80 113 79 58.0 2e-15 MELIKNENLADLYSFYGQLLTKGQQAYFEDYYYDDLSLGEIADNHGVSRQAVYDNLRRSS KSLENYEKKLHLKSDYVKMENLASKALKELNSNPEACHDNLTKLIKLIRGE >gi|297148814|gb|ACGQ02000002.1| GENE 472 546210 - 546443 278 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282933263|ref|ZP_06338650.1| ## NR: gi|282933263|ref|ZP_06338650.1| hypothetical protein HMPREF0886_2732 [Lactobacillus jensenii 208-1] # 1 77 1 77 77 98 100.0 1e-19 MTLNQYQVGHLLNMILLTFLMLNTVHSNILFAGIFLILSVVPSYFLLGQIAKTKPYFVFL QSLWDFILFSVFCFFIK >gi|297148814|gb|ACGQ02000002.1| GENE 473 546566 - 548143 1247 525 aa, chain - ## HITS:1 COG:SP0137 KEGG:ns NR:ns ## COG: SP0137 COG1132 # Protein_GI_number: 15900076 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 7 524 5 535 538 137 24.0 8e-32 MNFKDFIKTNPLNFGISILLIILSSFATILATYLIAITTTAIQKNDFNLWLNMLLLSLVV DVVIVFLGPISTYLLERQFQQYSHQVRLKLISHFYKEKKFELARWENRLTNDISMLRQEK FLLLPELISCICLIVFAALALWYANWLLFLVTILVTIISLFLPKFIQKAMQKSFQKISAA NQKYLFQIENWLDGIAEIRHFLAGAKLFKILASSSTSLERANLKQTGNIQILILLNKLMA TIFTTVLYLVAGYLFISGKAEFGLIIAVGNYEYYLTNSITRLTTSWGQIKGTDKLSREIL SDCHELEEEVKNIPNYAVDIATSPLTFQFENGESLSYPELNIKAGEKVLLTGDTGAGKST WMKLILGQLKPTTGKISFLKNGQLINYDPQQIRYIPQKPSLLPGTILDNITMYDKELKST ALSVVKKVGLDSDLAKFSLGINEPVDLEKLNVSGGQRQKIILARALVHKAKIIFIDEGTS AIDETGTKKILKYLSQLDVTVVFIAHNFNLELEQYFDRVIHLSKY >gi|297148814|gb|ACGQ02000002.1| GENE 474 548149 - 549726 198 525 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 319 525 5 217 223 80 27 1e-13 MNLKGLLKINYLQSFLLVFLLIFTSILTTSSTYVFKFLINSLSERDFKDFLAYLLVTVLL AVITGIGKGWTNYSFEKIKQAYLHQIRARLVKSYYYQNCHDISKMQNELSNNLKTLSDNF AQANYEIAVNSISFFLSLGVLLTLHWGLILITFFCFSLIMLAPKLLENYLARASKKVADK NQLLLKNAHNWLGGIEEIRRYHKKHKLTNELGQVAGKFEKAQLNEQKAMQFADFFNSGLN IGAQTLLAASAAILFFAHQLDLGSTMVASYFAFNIFASLGTLINQYMKLKSSRDLNQEIL LSQKFKPILDNENEAVGGVKGQNLLFKYQNGEEIRYPDFEIKPGDKVLVTGESGVGKSTL FKLIIGELKPVAGQINFFKQNGQEIKNRNLDMLYLAQDAKLFPVSILDNITMFKNLAIDK VQKACKLVDFDRDLAVLPQGLSTIVNLANENLSGGQMQKIVLARASLHDTKFLLLDEATS AIDSKTSFDIFKNLLQREITIVVIAHNLPAETKKLFTHQIHLEKG >gi|297148814|gb|ACGQ02000002.1| GENE 475 549740 - 550558 445 272 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00042 NR:ns ## KEGG: LCRIS_00042 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 1 272 1 269 270 170 38.0 5e-41 MTVGEALKQERKNLNLTQSAMAAEVISPSFYSKVENNLHEINVNDLLAILDAHCIDIPSF FMKIDSKVKTDYFNLNTFTDRVLDIWYNKDLKQLAELQTELTKYTGNDVSFLNLQVELLT FFIKNERNAKLSDSLMQKLRAELFKQNSWSLSSLKIFRLTMRIYDLDQLTFFMASIMNKF SDFKGVNLEIVEVIAAISVNYLDNCYENNEFNQSRNVQNYLEKMPANLTLFAYKLLGRYY QALFDKNTTELTNIRQVFIDCGYQTFIQLLPK >gi|297148814|gb|ACGQ02000002.1| GENE 476 550572 - 553139 1533 855 aa, chain - ## HITS:1 COG:SP1612 KEGG:ns NR:ns ## COG: SP1612 COG0515 # Protein_GI_number: 15901452 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Streptococcus pneumoniae TIGR4 # 35 337 19 329 330 149 33.0 2e-35 MNKYLPFVYANQKEDEFSKFLKKGTSKKYSINVSDFWIYFNVKSQKLPDSGWKGHLAARP EDKYKVFQIAKAVFEANDCSFKVAKNIECFKILNDPHIPVAEANKFITFYPQNINVFKIV IKQLFTKLKNFKAPQIFTDYQLPNNSCVQFRYGAFKKIARWDLKAQKELLYMTLPSGEII EDSRVGYFDLPEGVEWPFGSTEKWLLVPEKNISKQSKLNSYSFIEIMAQKNKGDVYLGVE NVTGKQVIIKSANPYVKNDCAAYSAKELLRNENQMLRNLSNLNVIPKVKSYFNENNIEFQ VTEFIDGKSLDSFFGKEKLLSVILSICNTIRLIHEAGYIIGDVTNSNFIYKDGITYLVDL EYVRKNANKKYKRTFKTPYYVPNYSTKTFLTQKEDLFSLGIIIITLTLGKTPKYNSENLN DAVRILINQNKLASKLNPQFSAFLDIANYILSLSIDPNPYVSENLNQNKIKDIYKYGFYV DSIKDFDTSLLMNSLEELPKQLKKSDYKIGEKWWKSKNFGQYVSELSIQHGISGVDTALK VSAEKLPIKQKVLDISNNFEYGDSYLFGSTGLIWNLIALFKEKEIDSSTLRNEAKKIILS WPEKKEVNDFVLGVSGKAYTLLYLNLLLKDASFSKELKKLGEKIFESFYDIDFETTNFSR INFAHGSVGKAYVLYLLGCYFKNRDFKSKAQLELKKADKIVDRSININKSFFSDSLKYSW CEGLAGIAFGFNRIELLSHGKIKFSSLSKIISFLSKGFCTIEACFCHGRQGILNTIFEYN QYHEKHFSKLDDLLQYDLLNFFNPSSGEWNILDETGYENAMDYGVGQLGVIVIDRMVFRK GENPFFIPIESEMTL >gi|297148814|gb|ACGQ02000002.1| GENE 477 553609 - 555033 1630 474 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 6 471 10 473 474 355 40.0 2e-97 MKELSACTTILVGKKASIDGSTMIARNDDTFLPITPQKFVVKPAVKGEKGRHIKSWLNKF EMDLPDWAYRTQAVPNVDYKKLGYYEESGINEKNVAMSCTESTYGNERTLAFDPLVVDGL DEDCMQNVVAPYIDSARDGVKLLGDLIKKYGSAAGNSVLFGDKDEVWYMEIVTGHHWVAQ RIPDDCYAVAANRVSIEQVDFNDPDNFMWSEGIQEFVEKHHLNVDREGFNFRHIFGTYNE KDRHYNTSRVWYAQRYFNPSIEQDPEDGDLPFIRKAEKLINPDDITFVLGSHYQETPFDP YGKGTDEEKHRYRPIGLNRTQNAHILQIRNDLPEDKAAIYWLCIGGPTFTPFIPFFANMN DTEESFKNTSLTFNQKDAWWFYKAVAATVESHYPQFVQFDTDYLIEMRRYFRARIEEVVA KAGDLKGEELTEFLTKENQETVRYTREQTEKLWGKMLTESINMSKLTFNMDKNL >gi|297148814|gb|ACGQ02000002.1| GENE 478 555044 - 556348 562 434 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 [Rickettsia canadensis str. McKiel] # 135 429 12 300 303 221 42 7e-56 MGLFDKIKKTLFGNNEEKAKQAPSKPEEEKAEVAEETNEVKPEENKSAEIETNAEAAEDK NESSASDEVKNEPEVSFTKEEQTDSEEVVDSKPEKDIVASQEVEDSSSEEEKGEETEPEA ESSESKTQELYDSGLKKTNQGFGARLNAFFAQFRSVDEDFFDELEDLLIESDVGFETSEE LVEQLKDEAKLQNAKSHDELKKLIVQKLVDIYDQNGDSEAEKLTYNDGKTNVYLFVGVNG AGKTTTIGKLAQRFKNQGKKVVLVAADTFRAGAVEQLKEWGRRTETEVVTGPVQADPASV VYDGVKHGLEEKADYVLVDTAGRLQNKQNLMKELEKIERTIKKLLPEEPSETLLVLDGST GQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVILAIRNEMKLPVKLVGLGEKAEDLADF DAASYAVGLFHGIV >gi|297148814|gb|ACGQ02000002.1| GENE 479 556348 - 559917 3513 1189 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1184 1 1183 1186 662 38.0 0 MPLTELTLTGFKSFAEKTKIKFGDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGSN MKDVIFAGSQYRTPMNHAEVELVFENKNRALNFDADRVTVARRILRSGDSEYLINNQTVR LKDVHALFMDSGISQDSLAIISQGKVDEILNSRPENRRAIFEEAAGVLRFKEQKQAATNQ LAKTTDNLIRINDLVNELEGRVEPLHKQSSLAKEYKFQKAGLDKDLKTLLAFELQDLELK RTELAKKTEKSKILLNKLDEEVSQSQNDLAQKKNQLAKTTKEKEALQERLLNLTQETSNL NTDLQVAEQSDQYNDATKHEYENQLNELKKNLSSLTEKEASLQKEVDQVATQEAALAKKR DGYAQSLHSDPETLSKELENLRNDYIQSLQDQTSNNNDLVYAENELKRLNNAAMPELKTA EAELEKAEAELTQLKQQGQEASAKKNNLQNQVQLKSDLINDLTAKQNLANRSLQDISQKY QAAKAQKEALENIQKRHEGYYYGVRNILNHLDQYQGVIGAVGELLDFPAELEAALTTALG GGVQDLVTDTKQSSRNAIMQLKQNRMGRATFLPLDGLRFSTIPSSTVTTLKSMPGFIGVA SELVKTKGQVDISVAVNYLLGNVIVADTIDNAMKINSRIYRYRIVTLDGDVISPGGSMSG GAKNQRNNSPLQTAGEINKLTKAVNELVAGVKAAKEKIITLDKKISKEKKIFASLNDELQ VAIQDLSALALSYQNKESEVKRLKEAHHLYQNRADERAAEIKRLEEKIKEKKQIQTQIND RLEKQKQAMAEKKDQIDDFANLNKDVQAKLAELNPKLAVLHNQKNNLKAKLHDLASQKET STSQVKLLETKLADLTSNKELTAEQKAQKVQKITELTKEKQELEVKLKEISSHLGQLDAQ ISQLDASFTRNYDLRKDAATEQESYSVSLAQVKTKMKQHLDKLRDEYALTYEMALNQAEI ENNSENQARLAKSVKLHQMSLDDIGPVNLSSIEEYEEVKSRYDFLTGQQADLLKAKEDIE KSMANLDEEVKKRFSHAFKEIAKSFSQIFPVVFGGGNAKLVLTDSDNLLETGIEIIAQPP GKKLQKLSLLSGGERALTAITLLFAILQVNPVPFCILDEVEAALDDANVTRFAKFLHHYD MHTQFIVITHRRGTMEKADQLYGVVMQESGVSQVLSVSLKEIKDNDEVS >gi|297148814|gb|ACGQ02000002.1| GENE 480 559927 - 560619 716 230 aa, chain - ## HITS:1 COG:SPy0531 KEGG:ns NR:ns ## COG: SPy0531 COG0571 # Protein_GI_number: 15674631 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Streptococcus pyogenes M1 GAS # 5 229 3 229 230 199 49.0 3e-51 MVSTKFKNYLFEEYGIKFKNETLLEEAFTHSSYVNEHPKESAGNYEKLEFLGDAVLELAV SDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGRGEEKTGARERKTLL EDVFEAFNGALFLDQGMDAVQKFLKLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKIE YQVLEETKLPSNFKVALFVEGKKISEGSGHNKKAAEQVAAKLALIKYQEK >gi|297148814|gb|ACGQ02000002.1| GENE 481 560704 - 562221 1725 505 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 4 485 90 579 600 331 39.0 2e-90 MQYGSESLFSTDDEYRYTNDGAASIKIDQNAKTATIKLRDNVKWSDGQPVVAKDIEFAYE ILANKETQSQNYTSSLEDIVGMKDYHEGKASTISGIEMPDGKTVVIHFNEMKPGMTQSGN GYIWENAEPYHYLKDVSFKKLTSSDKIRKNPLFFGPYKLSKIVRGQSVTWVPNKYYWRGT PKLSQITATVVSPNSVSQSIKSNKFDVTQVINSQWQNINSTKNVNFIAKVPLQYTYLGFK VGKYNSTLGKNVMDTDSKMNNKALRQAIAYGMNVNQVYKRYSSGLTFRIPTLIPKQFGDY FDKDAKGYSFNLKKGEELLDKAGYKKRGTYRVQPNGKPLTIHLAAMSGSSIQDAVIQNYI QQWKKMGLHVVLTGGRLIEFNSFYDKLKNDAPNVDMFIGAWSLSSEPSPNDLYSETAQFN YSRFVTKKNNELLSEIDSQKAFNHKYRVKKFHEWQQYMNNQAYVVPLTNSYSIMAINDKL TGYSLQPSKSNGNGFPNWYYVAYKK >gi|297148814|gb|ACGQ02000002.1| GENE 482 562651 - 564423 2083 590 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 570 1 579 600 390 41.0 1e-108 MSKVKVLSSIGLLTGVALTLTACGSNSNSSSNSASSVSKFKDTVPTKTAKSGGTVNYAIE TDSPFTGIFSNELSTTSTDSEVMQFGNESLLATDDSYKFTNKGAATFKLDKNAKTITIEV KKGVKWSDGKQVTAKDIEYAYEIIANKDTNSQRYTSSLADIVGLEEYHEGKSSTISGIEM PDGENGRKVVLHFKEMKPGMTQSGNGYFWETAVPYHYLKDVAFKDLESSDKVRKNPLFFG PYKLQSIVRGQSTTWVPNKYYWRGTPKLKKIVATVVGTNSVTQSIKSKKFDVAQVINSQW NNVKNTKGVNFIAQVPLSYSYLGFKVGKYDTKTGKNVMDKNSKMNNKALRQAIAYAMNVN EAYKRYFNGLAFRVPTLIPEQFGKYFSKNADAYSYNLKKAEQILDKAGYKKKGKYRVQPN GKKLVIYLAARSGSSVSDSITQNYIQQWRKIGLDVKLSSGRLMESNSFYDKIQNDSPNID MFMAGWSLSSEPSPADLYSEQAPFNFARFVTKKNTQLLNEIDSQKAFNNSYRVKKFHEWQ KYMNDEAYVVPVSNGYEISAINNKLTGYSLKPSLGNGNGQPNWYYVAYAK >gi|297148814|gb|ACGQ02000002.1| GENE 483 564763 - 565677 1155 304 aa, chain - ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 20 302 19 300 302 278 52.0 6e-75 MAKDKSTKKEKTAAKVSLPPSGFKVVWREIKKDKVAMGALIIIIAILLFTFVGSLFLSKS QVTEVNIADAYYSWGEAGHIFGTDDGGRDILQLLMMGGRNSIMIGLSVTLIVEVVGLVIG LISGYFGGTIDNIIMRIVDFIQILPQMPILIVFAATIPNYNAVTLVLMISLFGWTSSTRY YRSFVLSQRDREYVLASKTSGSSNLRIMFREVLPNISSMIIIDVILTVAGNIGIETGLSF IGYGLPTTTPSLGTLIGYANDPVNVTTRPWLWVPATILLLIISLSINYVGRALQRAGDAR QREN >gi|297148814|gb|ACGQ02000002.1| GENE 484 565692 - 566651 1116 319 aa, chain - ## HITS:1 COG:L91252 KEGG:ns NR:ns ## COG: L91252 COG0601 # Protein_GI_number: 15673821 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Lactococcus lactis # 1 319 1 319 319 359 59.0 4e-99 MWKTILRRFLIMIPQIFLLSVLVFFLAKMMPGDPFTGAINPNTDPKEIARLKQELGLNDA PWVQYTRWVGNLFHGDLGTSYIQHVPVASLIWDRAINTFWLSLFTVILTYLIAIPLGISA GRNQDKWQDQSIQIFNYFTFAIPGFVFYILGLYLFGFVLNWFPISGSVGSDASGTFGVFL SRIYHLILPGTLVALISTTGIVQYLRTGIVDNKVEDYVRTARSKGVPEKVVFNKHILRNS LLPIAAFFGNTITGLLSGSILLETVFSYPGMGKLFLDSISQRDYTTLTALILLYGILTLV GNLLSDIIMSIVDPRIRIQ >gi|297148814|gb|ACGQ02000002.1| GENE 485 566653 - 567624 738 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 270 6 275 329 288 50 3e-76 DMGKEIIQIKDLKVHYPIRSGFWNRITDYVRAVDGVNFSINEGETYGLIGESGSGKSTTG KSIVGVEKVTSGEILYKGVDVTKPANRKKLNYNKDVQMIFQDSMSSLNPRKRIEDIIAEP IRNFENLTTDEERKRVQELLDIVGMPSDAIYKYPHEFSGGQRQRIGVARAVATNPKLIVA DEPTSALDLSVQAQVLNFMKNIQQQYNIAYLFISHDLGVVKHMSENLAIMHRGRLVELGS REEIYKNPMHIYTRRLLSAIPRVDVEHRAENKKHRQAVEKEFQEDQARWYDKDGKVFPLR EVSRNHFVALPEEEIHKIEKEGE >gi|297148814|gb|ACGQ02000002.1| GENE 486 567625 - 568602 1260 325 aa, chain - ## HITS:1 COG:BH3640 KEGG:ns NR:ns ## COG: BH3640 COG0444 # Protein_GI_number: 15616202 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Bacillus halodurans # 1 322 12 333 340 414 60.0 1e-115 MHTAYRLQGKFYDAADDVSFTLKRNEILAVVGESGCGKSTIASSIIGLYDHKNTKVTGDI LYNELNLVGLNESLFNKIRGNNIGMIFQDPLASLNPLMRVGDQVAETLYYHTDMDESARK KRVIELFNQVGMPRPEEMYRMYPHELSGGLRQRVVIAMAIACKPEVIIADEPTTALDVTI QAQILDLLEDIQKESQSGIILITHDLGVVAETADEVAVMYAGQIVEKADVKTIFENPKHP YTRSLLHSMPQSDDQDEDLHVIQGTVPSLKNMPRTGDRFASRIPWIPASEHEENPVLHEV EPGHWVRCTCWKNFHFQDDQEASGE >gi|297148814|gb|ACGQ02000002.1| GENE 487 568756 - 568995 420 79 aa, chain - ## HITS:1 COG:lin1920 KEGG:ns NR:ns ## COG: lin1920 COG0236 # Protein_GI_number: 16800986 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 78 3 76 77 57 47.0 4e-09 MNETEIFNKVAELLAEHFDIEADKVTNELNFKKDLDGDSINFLEFVMDLEDTFGAEISDE DAAKLETVGQAVEYIKSHQ >gi|297148814|gb|ACGQ02000002.1| GENE 488 569053 - 570057 1252 334 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 1 333 1 330 330 318 50.0 7e-87 MRKIAIDAMGGEHAPEAIVEAVLEAKVKLPNTKFLLFGDENKIKKLLADNSTDKQIEVIA TTEIIQDEDEPVRAIRRKKDSSLVVAARYVKEGKADGLVSLGNTGALLAAGIFIVGRIKG VERPGLMPTLPVKNSDLGFNMIDVGANAQAKPEYILKWAEMANFYAEKVRGIKNPRIALL NNGAEYDKGDDIHKEAYQLLKESKLNFIGNIEGNELLDGKADIVATDGFTGNAVLKNIEG TSSVIIHLIKESLLNGSLTTKLGALLIKSALKGVAKKFDTAKYGGAVLLGLNAPVVKTHG RSDKRAIYYTLLQMDKMIEEELIKLFVNDFSKQD >gi|297148814|gb|ACGQ02000002.1| GENE 489 570066 - 572090 2200 674 aa, chain - ## HITS:1 COG:L0262 KEGG:ns NR:ns ## COG: L0262 COG1200 # Protein_GI_number: 15674226 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Lactococcus lactis # 5 655 3 656 666 612 50.0 1e-175 MLNNLFEPVTRLKGVGPKTAAALESLSIYSIYDLLFYFPYRYDDLEMIPLDQLNDGQKVL LKGIIATEPFVSRFGYKKSRLSFKLRIDHDIIMVNFFNQPWLKSQLEVGKEVAVYGKYNL AKQSLSGFKFVAAKSEKSSLSPVYPVNRHIKQKKLIELIKLALAQKQELMDIVPEEIRQK YRLMNDQELVEKMHEPKSPNEAKLAKRSAIFREFFIFQVQLALLTMRPQGRLGTAKKYDL NEIKKLTNTLPFELSADQKKVINELFADLHQKRQMRRLLQGDVGSGKTVVAVFGIYAAIT AGYQAALMVPTEILANQHFGKIDELLRPFGVRIALLTSSTKTMEKREIYRELADGTLNVV IGTHALIQPGLKFKKLGLVIIDEQHRFGVNQRQKLMIKGENPDLLAMTATPIPRTLALTA YGEMDVSEIRHLPAGRKPIVSAWITSSHLDQVLAKMKEQLSQGFQIYVVTPLIEESENID LKNAKELCLKLQSYFNHEKVVLLHGQMNGEEKDQIMTEFSQGDINILVATSVIEVGVDVP NANMMVIFDADRFGLSQLHQLRGRIGRGKTESFCYFVADPKTDIGKKRMEIISSTSNGFK LSEEDLKLRGQGDLFGKAQSGIPEFRLGDLVNDYNTMVVAQNVARQLVKTDPDLMENSAL KEVIDYSQKIKEID >gi|297148814|gb|ACGQ02000002.1| GENE 490 572095 - 573711 1978 538 aa, chain - ## HITS:1 COG:SPy1885 KEGG:ns NR:ns ## COG: SPy1885 COG1461 # Protein_GI_number: 15675702 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pyogenes M1 GAS # 1 538 12 554 554 530 54.0 1e-150 MVRVATHRMGKNKEYVNNLNVFPVPDGDTGTNMNLTMESGARAVSESQSTSVGELVEALA KGMLMGARGNSGVITSQLFRGMYKATVGKQTLNAQELADAFSNGVATAYKAVMKPVEGTI LTVARVAAEDGKNAANDSDDVEVVMKAIVEGAKRALKTTPDLLPVLKEVGVVDSGGQGLL FIYEGFLEGLLGENFSDVYTPDIDEMDQMMSATHEQSQSKLSTKDIKNGYCTEIMVDLTK DIPGKKPFDLEEFRKHLSTLGDSLLAVSDDTIAKVHVHTEHPGEVFTYGQQFGELGKIKI DNMRIQHETIVDEAAKEEEKVDFAVVAVCSGNGVRQLFESGGVNRIISGGQTMNPSTQDI IDTIKKSGASKAIILPNNGNIIMAAKQAAEVCDIPVGIVQTKTISQGLTAMLAFNPDASV EENVEAMNEEASMVVSGEVTRAIRDTNINNVEIHKDDFMGIIDGNIEIDKPDLIDATCAM IEKMLDEDSEIVTIIYGRDSNKKQAEEVQAKLEESHDDLEFEIHDGGQPVYSFLVSVE >gi|297148814|gb|ACGQ02000002.1| GENE 491 573771 - 574133 510 120 aa, chain - ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 120 1 120 121 118 55.0 3e-27 MAVKIKTKHGLIDVTNGVIATVVGSAATANYGVVGMASKNAIRDGVNEILNRANYKRGVV VKSVDNRITVDVYIIVGYGLKISEVSRNVQDSVKYNLEQQLGIQTKSVNVIVQGVKVLDE >gi|297148814|gb|ACGQ02000002.1| GENE 492 574310 - 574495 313 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227526050|ref|ZP_03956099.1| 50S ribosomal protein L28 [Lactobacillus jensenii JV-V16] # 1 61 1 61 61 125 100 5e-27 MAKDFVTGKKTTFGNKRSKALNSTRRAWKPNLQKVRILVDGKPKRVWVSTKTLKSGKVTR V >gi|297148814|gb|ACGQ02000002.1| GENE 493 574566 - 575240 696 224 aa, chain - ## HITS:1 COG:L76216 KEGG:ns NR:ns ## COG: L76216 COG1564 # Protein_GI_number: 15673806 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Lactococcus lactis # 4 220 3 210 211 146 41.0 3e-35 MKGISLLGGPLELIPEGFFNELKYNNKFLLGVDRGSLFLVEKGLTPDVAVGDFDSLKKAE LAKIEKVVKDIRYSNPVKDLTDSELMIKTAFENYHLTSLKIYGATGGRLDHFLVNLFTFL KPEFQIYAPKVTLIDRQNVIRLFLPGKHHIKPLEGYSYLGIVNLTEVKNLSIRGAKYPLE NYTSAYPVSFASNEFVADKSVELYFEKGTIAVIYSKDLNRFANL >gi|297148814|gb|ACGQ02000002.1| GENE 494 575227 - 575889 702 220 aa, chain - ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 3 218 4 218 218 201 48.0 1e-51 MIISPSILNADNLNLGRDIKKATQAGITRFHIDIMDGHFVPNLSYGPQLVQDFKREFPLV EAEVHLMSNNLETTIPAFTQAGADLLEFHFEATNKVDYWLDYLASNGVKAGLVLNPETDV ASLKPYLKKLKQVLLMSVHPGFGGQKYIPETAEKIAQLKQLTNEAGVNIPIEVDGGINDK TAPLAAQAGADILVCGSYIFKNGDIASQIRKLEGILNEGH >gi|297148814|gb|ACGQ02000002.1| GENE 495 575923 - 576810 814 295 aa, chain - ## HITS:1 COG:BH2503 KEGG:ns NR:ns ## COG: BH2503 COG1162 # Protein_GI_number: 15615066 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Bacillus halodurans # 2 288 1 289 294 239 42.0 4e-63 MITEGIVISLIAGYYDVMTPNGLVRTRARGVFRKRQEKPQVGDLVKVQLDKHGTNYLIEV FKRKNRIGRPAVSNVSHVLLVISAVEPDFSVNLLDRFLTFFAWQRVPVTIYLSKADLATD EQVETIKKALNYYEEIGYRVFSNKEKIEQALLSLIKDNEIWTLAGQSGAGKSTLLNFLKE DAGQDTGEISKSLNRGKHTTRSVQLFAYSDGFIADTPGFSAIDLGPIKIKELQNYFIEFN KASQFCKFRGCQHIHEPKCEVKALLSEGKIAQFRYDDYLALRTEIEDQRLPEYLK >gi|297148814|gb|ACGQ02000002.1| GENE 496 576807 - 578801 2120 664 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 5 313 4 309 342 331 54.0 4e-90 MITQGYLLGERYKILDTLGEGGMANVYLAEDIILQRKVAVKVLRLDLQRDPQTLKRFTRE AMATSELSHPNIVSVLDVDTDQGLPYMVMEYIKGPDLHQYLHDNYPLPFTEVIRIMDQIL SAVALAHKHNVIHRDLKPENILIDENTGKIKIADFGIAVALNQSTITQTNSTMGSVHYMS PEQTKGGLVTKQSDIYSLGIILYELLAGKVPFGGETAISIALKHLKEPLPDLKEIVPNLP QPLENVVLCATAKDPRDRYESVLTMKADLDTSLNPERANEPVFKPSHNPALEETRVIPTI ISSEDAALKNVKEEKKQKPAKKKKFWQTFKEHKVWLLSSIFAIIVVLICLILALSKTNQT TVPDVSDFDENQAKQSLQAAGLKIGEIEYQYSDKVAKGKVIKTLPTKGNSIEKGKSVDLV ISKGAGLTTVPDLVGVYYTQAKKRLEKLGFKVEKETDYSTEISRNYVMSQSIEAGERVNA AKTTIVIVVSKGSRKKAKPKQFKVKDLTGYSLKSAQDYAEENGLTLKTEERYSDTVEKGL IISQNPTAGVTMARGDTLEVVVSKGKQDSSSASSDSASSDSSSDTNSVNKSVSISYDSSK GNNGNGNHIQIYIADDNHQITNVYRDFYITQNTTLNIPFSLKNGSGTLIVVNDGTTVTNE RVTK >gi|297148814|gb|ACGQ02000002.1| GENE 497 578798 - 579547 489 249 aa, chain - ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 2 247 1 244 246 193 41.0 2e-49 MIETAFASSIGRVRKTNQDFVQVYENQKSIKMAVVCDGMGGHQGGDVASTMAVSHLGHDF AKTDFVTAEMAKKWLQVQLKLENETILRAADRFPDLNGMGTTVVLAICFENNALIAHLGD SRAYLYSGEKFTQLTEDHSLVNELVKLGQITKEQARNHPQKNIITQALGVSSTINPEFNR PIIQENDIILLCTDGLTNSLEDDQIHQILATKSLSLNDRCKKLITEANRLGGGDNITVCL LLCKAGDKK >gi|297148814|gb|ACGQ02000002.1| GENE 498 579553 - 580866 1129 437 aa, chain - ## HITS:1 COG:lin1936 KEGG:ns NR:ns ## COG: lin1936 COG0144 # Protein_GI_number: 16801002 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Listeria innocua # 4 434 6 440 446 329 42.0 8e-90 MTNSARAVALATLIKVFKQKGYSNLSLSHALNENNFSQKDQAFVTQLVYGTIQYQLFLEY QLKDLLRTKLKEDYLKPLLLMSVYQLIFLNRVPNRAVLDEANKLAKSFGKKNSSGYRLVN GILRSFLRRGQVLPSPKDPVHFLSIKESMPEWLVQYFIKNWGLKRTEKILPSLNKRAENS IRIAKGANQTQIINSLKKQGYSLTESTLADNCFLVNHSIVNTDEFKAGQITIQDEAASLV VDCFDLQENDYVLDTCAAPGGKTSQLAENLPQGKVISLDIHKKKLNLIKKYAERMHVDER VETLALDARKAAEHFSDTKFDKILVDAPCSGLGLLRRKPEIRYDKTMKDVHNLARIQLGI LNSAAQLLKKNGELVYSTCSITIEENEQVIAEFLKKHPEFEIMPITLSKVQSKESLKILP DTYGSDGFFIAKMKLRG >gi|297148814|gb|ACGQ02000002.1| GENE 499 580859 - 581803 1004 314 aa, chain - ## HITS:1 COG:SP1735 KEGG:ns NR:ns ## COG: SP1735 COG0223 # Protein_GI_number: 15901567 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 313 1 311 311 294 50.0 1e-79 MTSVIFLGTPNFGATVLEGLIKDNYQVLAVVTQPDKKVGRKQKLTSSPVKEMAQKYDLPV YQPARLPRSEELDTLINLHADLIITAAYGQFLPTKFLKSAKIAAVNVHGSLLPKYRGGAP IQYSLINGDKETGVTIMEMVKEMDAGDMYAQEKLPIAPEDTAGSLFEKMAILGRDLLLKT LPSIIDGSCDKKAQDTTKVVFSPNISKDQERITKDMTASQVHNLIRGLNPDPGAYLMING QRMKVWSSEVANETTQLPAGALVDNHKRFAVSFANHTVLNLTEIQPTGKKKMAGRDYMNG KGASLKLGEVFIDD >gi|297148814|gb|ACGQ02000002.1| GENE 500 581820 - 584213 2088 797 aa, chain - ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 2 793 4 793 797 759 49.0 0 MIAQVIVDVAAKQTDRIFEYQVPEQIADLTTGSRVVVPFGRRKVQGFVVGLTKTSQYQGK LKDLLLVVDEQAPLTPELVELSAYLAKTIFSYRISILQTMLPSVMRAKYRKILIPTTKQA EELQIFKGKSIDLAKVTDLEEIAQINQLLKKDMAKIEYAVENKAKEKTKKVYYLTSSLTD YKEIQQSLRSNAVKQAELLQFIIQHFEQFPFDSGQLKKYNLSFSAINTLVKKDLLKIKEV EQYRNPLTEFSKNIKRKIVILNQEQTAALQKINKSIEKSEAKTYLLEGITGSGKTEVYLH AISNALQKGKNALMLVPEISLTPQMVSQVNARFGKEVAVLHSGLSEGEKYDEWRRIRRGE ARVVVGARSAIFAPLSNIGLIIIDEEHEASYKQEDTPRYHARNVAIWRSQFHNAPLVLGS ATPSLDSRARAQKGVYELLRLTKRANQKALPEVKIIDLKSVEFAGSQFDLSTDLVEAIKE KLMRNEQIILLLNRRGFASFMLCRDCGFVLQCPNCDLSLTMHKDTNQMICHYCGFHQPIP NSCPNCQSSKIRFLGTGTQKVEEELSELLPGVRILRMDVDTTRRKGSYKEILDKFGAGEA DILLGTQMIAKGLDFPNVTLVGVINADTALYLPDYNASEKTFELLTQVAGRAGRAEKSGQ VLIQTYNPDHYAIKLAQKQDYETFYQTEMKVRYQGNYPPFFFTNLISVASKNEQNAAKEA FAIKRILMRNLHAPTIVLGPTPSAISKIKNQYYYQILVKYKREPKLNELLHQIQDLAQEK QKYGLNIYIDTQPGRIS >gi|297148814|gb|ACGQ02000002.1| GENE 501 584268 - 584486 340 72 aa, chain - ## HITS:1 COG:SP1737 KEGG:ns NR:ns ## COG: SP1737 COG1758 # Protein_GI_number: 15901569 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pneumoniae TIGR4 # 6 66 4 63 103 64 63.0 4e-11 MKITYPSIDKLLDRVDSRYSLSVLASKRAHELEAGNPAALDKFKSSKSVGQALEEIAAGK VIIDPDHKTNID >gi|297148814|gb|ACGQ02000002.1| GENE 502 584490 - 585104 790 204 aa, chain - ## HITS:1 COG:L149828 KEGG:ns NR:ns ## COG: L149828 COG0194 # Protein_GI_number: 15673881 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Lactococcus lactis # 1 203 1 202 205 243 61.0 1e-64 MASKGLLLVLSGPSGVGKGTVKSAIVETKAFPFEYSVSMTTRKPRPGEVDGKDYYFVSVD RFKEAINQGELIEYNQYVGNYYGTPLAPVKKMLSEGKDVLLEIDVNGAQKVREQMPDGVF IFLTPPDLHELKHRLVHRGTDSEAVIQNRMKQARNEIMMMSDYDYAVVNDTVANAVSHIK AIVEAEHVSVKRVIDSYRKMVEED >gi|297148814|gb|ACGQ02000002.1| GENE 503 585317 - 585622 409 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851323|ref|ZP_05556712.1| ## NR: gi|256851323|ref|ZP_05556712.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 101 1 101 101 155 100.0 1e-36 MKNLQLIGKNLVTKTFNLFEDIFAYDQDQLSIIGQKQHYILANLSYALLHRSYILLTLKD NTNIIGKIIKVVPNNKIIVKNADTNAINIVNITDIFRTDIA >gi|297148814|gb|ACGQ02000002.1| GENE 504 585677 - 587362 1855 561 aa, chain - ## HITS:1 COG:SP1202 KEGG:ns NR:ns ## COG: SP1202 COG0497 # Protein_GI_number: 15901065 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Streptococcus pneumoniae TIGR4 # 1 561 1 555 555 393 41.0 1e-109 MLVELDIQNFAIIKNLKIKFKKNMTVLIGETGAGKSILIDALSLLLGHRAQSEMIRSGEK KAVVTGLFTLEESQKQIVENLCSEYGLPLDGDDLIISRELSNKGRNVIRINGQLTTITVL AQIGQYLVDIHGQSDQQILMNQERQIDLVDEYAGAIFKVELEKYQSLFKKWVELTNKLKH LQKGAQELAQRHDILQFQKDELDSADLTDIDEDEKLEQEYSKLNNYQKIAETANYLMQVF DDDEHGLTTLLGNAQNAADELAEYGSDFKNMAQSLSDGVYSLSDSRSELGNIMDNLDFDE ERFQYVTNRLDTLNNLKKKYGPDLSDVFNFYQKISKELSQFEMGGLDEDKLQKEISQLED NMAASAQKLHQMREKTSSQLEKEIRSELADLFMEKARFSIRFVQSKTFNELGTDEVAFYI APNPGEELMPLVKIVSGGEQSRLILALKTIFSKVEPVGTMVFDEIDTGVSGRVSAAIGKK MHSIGQQKQVIAITHSVQVAASSDWRYKIEKHVEDGNTFTQVRILDDQESVKAIAQMMAG INITAAAEQNAADLIKRSHEK >gi|297148814|gb|ACGQ02000002.1| GENE 505 587376 - 588188 870 270 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 244 3 245 274 302 61.0 5e-82 MAKERADIILFKQGLFNSRSQAQRAIMAGLVTDHLHQRIDKAGEKFPEDEKFYIKDDGQK YVSRGGFKLEKALKVFDIDLTDKLCLDIGASTGGFTDVALQSGAKKVYALDVGYNQLAWQ LRDDSRVIVMERQNFRYSKPADFTEGLPDFAMTDVSFISLDLIMPPMFDILKDQCDAVCL IKPQFEAGPDHVGKNGIVRDHNVHEAVIKHTIDKALEIGFDVLGIDYSPIKGGKGNIEFL IHLRKNLANPSQLLWDGDVKSVINAAVNQL >gi|297148814|gb|ACGQ02000002.1| GENE 506 588188 - 589054 1034 288 aa, chain - ## HITS:1 COG:alr0213 KEGG:ns NR:ns ## COG: alr0213 COG0142 # Protein_GI_number: 17227709 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Nostoc sp. PCC 7120 # 27 269 40 287 309 184 44.0 2e-46 MTDFTNFYQKYQPIIDHYLEQHLSSEIEDKKFSQIMAYSVMAGGKRLRPLLFLATLISLG KEITEKEIRVACGIELIHTYSLIHDDLPAMDNDDYRRGMLTSHKKWGEAEAILAGDALLP MGLEWIASAENAEMVAVMANAIGPNGMAGGQYLDIDSTNNDAVKEDNNFINRMEWLKTGC LIKASVEIATIYAKADDLSRKKLVDFSANFGRAYQIYDDLVDVVQTSQEAGKATHKDEEE GKNNTLTLLGIDESRKELQELILAAKNNLTDLNSEVLLGFLNLYKKVL >gi|297148814|gb|ACGQ02000002.1| GENE 507 589056 - 589298 388 80 aa, chain - ## HITS:1 COG:SPy1499 KEGG:ns NR:ns ## COG: SPy1499 COG1722 # Protein_GI_number: 15675403 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII small subunit # Organism: Streptococcus pyogenes M1 GAS # 3 71 2 70 71 60 55.0 9e-10 MPSKKNNFEEQLADLEKIVNNLENGNVPLDEALEQFQAGVKISRDLEKKLTAAEETVAKL IDKDGTEHELDPQNAAAPEE >gi|297148814|gb|ACGQ02000002.1| GENE 508 589288 - 590649 1414 453 aa, chain - ## HITS:1 COG:L0254 KEGG:ns NR:ns ## COG: L0254 COG1570 # Protein_GI_number: 15672836 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Lactococcus lactis # 6 447 3 417 417 340 44.0 3e-93 MENHDKYLSVSDLNYYINLKFKNDPYLHQVFLKGELSNFRYRRNSHQYFSLKDEKAKISV VMFRSAFEKLKFKPEEGMKVYVSGYIGVYPPQGTYQFYAQTMEPAGLGELYERLRQLQDK LSKEGLFAAEHKKKLPRFPDKIAVVTSASGAVIHDIMVTANRRFPHAEIDLFPAQVQGDT AAESLVNAMNQIKERASEYDVMIIGRGGGSLEDLWPFNEEIVVRSVYSMPMPVISSVGHE TDTTLCDLVADVRAATPTAAAEYATPNLSDELAGLHQLQSRLLTSMQACIRERKQALLRI QNSPIMREPMRLYDQQVQSVDQLTGRLMQIIKVILQNNRQNLKISEQKLLAQSPKRLLER TKQSNDYLNQRLLNAIKTLLKDKRIAFQQQVQTLEDISPLKVLSRGYVYTTDQAGKTIMS TKNIAKDEVLNLHFADGKAKAKILEVEDNEDAK >gi|297148814|gb|ACGQ02000002.1| GENE 509 590636 - 591487 922 283 aa, chain - ## HITS:1 COG:BH2784 KEGG:ns NR:ns ## COG: BH2784 COG0190 # Protein_GI_number: 15615347 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Bacillus halodurans # 2 273 3 274 279 275 51.0 9e-74 MAEILDGKTLANTLSEEIKEKVKAMSINGIKPHFCVINIGDDPASKVYVRAKKRRAEKLG IDQEIFQLPAETTEEEALALIQKLNNDPQINGVMVQLPVPDQINSDHLIEAINPEKDVDA LTAANVGRLWQGTHFVKPATACGIIDLLDHYQISLDGKRAVIIGRSNIVGKPLAALLLER NATVTLAHSHTKNLTELTKQADILVAAVGKAKLVTADMVKEGAVVIDVGINRIDGHLVGD VDFDNVKKRASYITPVPGGVGPLTVESLMQQVVALTRRQNGKS >gi|297148814|gb|ACGQ02000002.1| GENE 510 591534 - 591935 436 133 aa, chain - ## HITS:1 COG:L92686 KEGG:ns NR:ns ## COG: L92686 COG0781 # Protein_GI_number: 15672676 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Lactococcus lactis # 42 130 235 322 323 74 43.0 5e-14 MSQHDSRRIAMQAIFLANGEPDLTIEQVETKVAKSLDLKVIPAYAHEIIAGVLAKKSEIE ADISKYLRKGWRLERVNRISVAIIEVAIFEISQSDAISAPAAVNEALILCEEFDDPKSKS FINGILANFMPSK >gi|297148814|gb|ACGQ02000002.1| GENE 511 591935 - 592381 596 148 aa, chain - ## HITS:1 COG:BS_yqhY KEGG:ns NR:ns ## COG: BS_yqhY COG1302 # Protein_GI_number: 16079489 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 135 1 134 135 80 38.0 1e-15 MADSSTILLTSNQTGDEIKIDLSVLEVILAIAAEKVDGVAAMRGSLKSGLNWVLGRQDRG KGVAVSVDQNHEIIADVYAYFDAGVNVPKVAAKIQEKLAGQLSQMTDLTLTTVNVHVVGL IFPDEKAHVTKVEEDKKELFPESEKDGE >gi|297148814|gb|ACGQ02000002.1| GENE 512 592406 - 592975 686 189 aa, chain - ## HITS:1 COG:lin1392 KEGG:ns NR:ns ## COG: lin1392 COG0231 # Protein_GI_number: 16800460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Listeria innocua # 3 187 1 185 185 254 65.0 5e-68 MTMISVNEFKNGLTIEHNNDLWRIVEFQHVKPGKGSAFVRSKLKSLRTGAVQDYTFRSTE KVNTADIQTKPMQYLYNDGANYVFMDMNTYEQLEIPNSEVERESKFLKENMEVNVIMHES ETLGIDLPNTVDLEVAETEPGIRGDTSSGGGKPATMETGLVVNVPFFINAGDILTINTSD GSYVSRANK >gi|297148814|gb|ACGQ02000002.1| GENE 513 593044 - 594150 1247 368 aa, chain - ## HITS:1 COG:SA1360 KEGG:ns NR:ns ## COG: SA1360 COG0006 # Protein_GI_number: 15927110 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Staphylococcus aureus N315 # 12 366 2 351 353 259 40.0 6e-69 MTDSLLLTLTQARIKKVLELMKQYNADAFLIFNQANYRYLTNFTGEEAQLILTNKGDRYL LSDSRFSGQIQAQASGELTAIMKQTGDVNEISRILKKLAVKRLILEGEFVSASEFSNLKE ANPNCQFILVEELIEQVRNVKDELEVKALQKAISISIESFKQILPMIIPGAVEREIAAKL DYLFKLNGGDGPSFETIIASGVRSSWAHGVASDKVIKQGELVVCDFGSFYNGYTADITRT VAVGEVDTELEKIYQIVHEAQRRGIEAAVVGNTGADVDKAARNYIVEQGYGEYFGHGIGH GIGLEIHELCMPALPFKKQKLVNNMAITVEPGIYLPEKGGVRIEDDILINEQAPVTMSFF QKDELIHL >gi|297148814|gb|ACGQ02000002.1| GENE 514 594216 - 594515 511 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526027|ref|ZP_03956076.1| 50S ribosomal protein L27 [Lactobacillus jensenii JV-V16] # 1 99 1 99 99 201 100 6e-50 MMMNNFSTMNLFAHHKGGGSTANGRNSAGRRLGAKRADGQAVNAGSIIYRQRGTKIHPGK NVGIGGDDTLFALVNGVVKFERLGKTRKQVSVYPVEEAK >gi|297148814|gb|ACGQ02000002.1| GENE 515 594534 - 594896 603 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227526026|ref|ZP_03956075.1| ribosomal protein L21 [Lactobacillus jensenii JV-V16] # 1 120 1 120 120 236 99 1e-60 MKAPGLASLSIFYGGVQMYAVIKTGGKQYKVAKGDSVFVEKLDVEAGEKVTFDQVILVSD GKDVKVGTPLVEGAKVVATVEKQGKEKKVVTFKYKPKKHSHSKYGHRQPYTKVTIESIEA >gi|297148814|gb|ACGQ02000002.1| GENE 516 595024 - 595599 358 191 aa, chain - ## HITS:1 COG:L104745 KEGG:ns NR:ns ## COG: L104745 COG1814 # Protein_GI_number: 15673457 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Lactococcus lactis # 23 188 12 221 229 103 33.0 1e-22 MKRTFTFSRFIKIKSQCFWDKLNIIRAGILGANDGIISVSGIVLGASGANLDSKTLLIAG LSGMLAGACSMAGGEWMSVSTQRDILMKKLENQTVDEDLKLEKTDGLTPISAALSSFCSF IAGAIIPLCAMTLSPMNLRIPITLCAMVVSLALNAFISTLNSEASVKKAIFRNIFTGVLT GVITFTLGSAV >gi|297148814|gb|ACGQ02000002.1| GENE 517 595698 - 597101 1736 467 aa, chain - ## HITS:1 COG:SPy0290 KEGG:ns NR:ns ## COG: SPy0290 COG0719 # Protein_GI_number: 15674464 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 11 467 16 472 472 657 67.0 0 MTDEAIKNLGGQYQYGFKDDIEPIYTTGEGLSEEVVRKISAAKNEPKWMLDIRLAAYKTY RKLSLPNFGPDLTKLDYEHINYFRRDSDFVARKWEDVPEDIKKTFDKLGVPQAERKYLAG SSAQYESEVVYHNMRKQFEDMGIIFMDTDTAVQKHPDLVKKYFGKLVPASDNKLAALNTA VWSGGTFIYVPKGVSCPTPIQSYFRINAGNSGQFERTLIIVDEGAHVNYVEGCTAPNYSA DSLHAAVVEVNVLKDAYCRYTTIQNWSNNVYSLETKRAQALENATMEWVDGNLGSKVTMK YPSIYLNGQGAHGNMLSIAFAGKGIDSDTGATMVHNAKNTYSSTVSKSLCKDGGIADYRG HIRFNEHCDGSFAHVECDTIIMDDKSSSDTIPFNEVLNSNVSMEHEAKVSKISEEQLYYL MSRGISEEKATEMIVMGFVEPFTKELPMEYAVELNRLIQLNMSGGIG >gi|297148814|gb|ACGQ02000002.1| GENE 518 597101 - 597544 393 147 aa, chain - ## HITS:1 COG:SPy0289 KEGG:ns NR:ns ## COG: SPy0289 COG0822 # Protein_GI_number: 15674463 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Streptococcus pyogenes M1 GAS # 5 141 6 140 159 116 44.0 2e-26 MSFNLTDLYRESIVEAAQAPRHHGQLKKKNATVELHNPSCGDVLVLDGYFENNKLVDMAF SGYGCTISQASASLMTDQVLGQEISEIKDEVMLFSNLITDKLNQAEKDRLGDCIMLEGVK EFPARIKCATLAWKAIYQLIENYEGQK >gi|297148814|gb|ACGQ02000002.1| GENE 519 597541 - 598734 866 397 aa, chain - ## HITS:1 COG:SPy0288 KEGG:ns NR:ns ## COG: SPy0288 COG0520 # Protein_GI_number: 15674462 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Streptococcus pyogenes M1 GAS # 6 395 8 404 408 445 55.0 1e-125 MKNNYKADFPLLKNSDLIYLDSAATSQKPQCVIDRLSKYYQSQNANVHRALYGLGEATTA KYEQARKHVADFINADQDEVIFTKGTTQGLNWVANGFAQSILKPGDEILISIEEHHSNLV PWQIIAKKTGAKLVYVYLTPNLEFDYDDYEAKLNSKTKIVALHHMSNVLGNILDLSKIAK LAHSFGAYLVVDGAQAAAHIEIDVQKFDCDFYAFSGHKMLGPMGIGVLFGKKNLLNQMTP VEYGGEMISEVSQQSVSFKSSPLKFEAGTQNVAGAIGLDTAINYLKQVGISNVKAIDYEL CKYARSRLEEIGGVSIYGEANNGIISFNLDGIHPHDVVSFLDADKLCLRAGHHCAEPLMN YLKIPACLRASFYIYNDFSDIDALVKSLNKIKEFFGK >gi|297148814|gb|ACGQ02000002.1| GENE 520 598724 - 599953 1359 409 aa, chain - ## HITS:1 COG:SP0868 KEGG:ns NR:ns ## COG: SP0868 COG0719 # Protein_GI_number: 15900751 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 2 409 4 420 420 370 46.0 1e-102 MENVETLAKKRLEPTWFSEIRENASQLIGKTPYPDFKKLKYKHWDLHLTGNFIPTESFAS KANVVQAGENLAQINIPDEYRKKGVIVADFHDALQNYPKLIKKYFMTKGLKASDDEFLAE HVAYLQSGLFIYVPKNVHVETPLTCEYLQKAALGSEYVHHVLLIVDEGSNFSYIEKLTSQ GNEASKVNFVCEVIAKKNSHVHYTSIDNLAENVTSYLNRRGYLEKDAKVDWAMALMNDGL TLGDFNSDLVGDGSHAELKAVGISTNNQVQGINTRVTNYGNNTIGHILQHGVSLDKSTLI FNAVGHIMKGSKGSDAEQESRILMLSQGARGDANPILLIDDNDVMAGHAASIGRVNPEQL YYLMSRGLDKKMAERVVIRGFLSPVLEEIPTADLKQVFSDLIERKISEK >gi|297148814|gb|ACGQ02000002.1| GENE 521 599965 - 600756 1091 263 aa, chain - ## HITS:1 COG:L34806 KEGG:ns NR:ns ## COG: L34806 COG0396 # Protein_GI_number: 15673775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Lactococcus lactis # 1 257 1 253 256 331 63.0 8e-91 MSTLEVKDLYVSVQDNNEEKQILKGLNLKMSTGEIHAIMGPNGTGKSTLSSTIMGDAKYH INSGDILLNGESILDWPVDQRARAGLFLAMQYPAEIPGVTNAEFVKAAVNARRPKNDPVP MGEFMKELQTTLKTLDMTMEMAGRYLNQGFSGGEKKRNEIMQMMMIKPSFAILDEIDSGL DIDALKVVSRGVNLMRGDNFGALLITHYQRLLNYIEPDFVHVMMGGKIVKTGDASLAKRL ENEGYAKLRDELGLDIKLVDEDA >gi|297148814|gb|ACGQ02000002.1| GENE 522 601156 - 601296 56 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIDLVIIVGLVLHLINKYFDWQNKKYANEIMKLKIKKIKHKHFYIA >gi|297148814|gb|ACGQ02000002.1| GENE 523 601406 - 601585 180 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851341|ref|ZP_05556730.1| ## NR: gi|256851341|ref|ZP_05556730.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 59 1 59 59 85 100.0 7e-16 MRKEEIEEYIQREIRKPPVDYQISDPFIESLNDEEMAYLEKRLIELSKTWQPPYEYLGP >gi|297148814|gb|ACGQ02000002.1| GENE 524 601626 - 601919 210 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851342|ref|ZP_05556731.1| ## NR: gi|256851342|ref|ZP_05556731.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 97 1 97 97 184 100.0 2e-45 MEKIKCPSWEWEWATHDMIHEGTLRTNINLISHICFLKTERILNSDQYYYVDDINELIPD TMNAEEKAVFLSKLKKVSQKVSVPDDFDKKLRKQFQE >gi|297148814|gb|ACGQ02000002.1| GENE 525 601963 - 602169 266 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851343|ref|ZP_05556732.1| ## NR: gi|256851343|ref|ZP_05556732.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 68 1 68 68 104 100.0 2e-21 MNDKDDFAKQMEIGQKRLEKVWPKKIEISLRVWKRRHDAGRVPDDYYEKIRKALLKSLDD WNKRHGKS >gi|297148814|gb|ACGQ02000002.1| GENE 526 602330 - 602512 269 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282933208|ref|ZP_06338595.1| ## NR: gi|282933208|ref|ZP_06338595.1| glycyl-tRNA synthetase alpha subunit [Lactobacillus jensenii 208-1] # 1 60 1 60 60 105 100.0 1e-21 MRRAEIDKFIQEELSKPPVDAQYAQHPLLDSLSEEEWNYLDNRLKEIEKTWENPYFNIGA >gi|297148814|gb|ACGQ02000002.1| GENE 527 602552 - 602689 146 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKTMTEAEKNKLLREKIQQFLHADPMDVIGDDTILELIDLENEK >gi|297148814|gb|ACGQ02000002.1| GENE 528 602918 - 603151 326 77 aa, chain - ## HITS:1 COG:no KEGG:FI9785_830 NR:ns ## KEGG: FI9785_830 # Name: ps128 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 76 1 76 77 79 53.0 4e-14 MFTIKLVSNSKDKVIYDIWNGDTKKCINQIEVNKRNLSYRLKNNQKLSNSYEAGAYRAIM KAIKDDSYPEQFSNGWI >gi|297148814|gb|ACGQ02000002.1| GENE 529 603335 - 603577 300 80 aa, chain - ## HITS:1 COG:no KEGG:FI9785_830 NR:ns ## KEGG: FI9785_830 # Name: ps128 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 4 80 1 77 77 103 70.0 1e-21 MRRLFTIKLVSNTPDTLVYDIWDFDRNEYVNQIEVSKKDLSYRLKNNQKLSNSYEAGAYR AIMEAIQFNVAPQEYSDGWG >gi|297148814|gb|ACGQ02000002.1| GENE 530 603620 - 603808 246 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851347|ref|ZP_05556736.1| ## NR: gi|256851347|ref|ZP_05556736.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 62 1 62 62 100 100.0 2e-20 MRKAEIDEYIQKLINTPPTIDGQYTTEFEDSFSKEEWNYFIEKLTEISFTWTPPDEYFYK GP >gi|297148814|gb|ACGQ02000002.1| GENE 531 604517 - 605704 1523 395 aa, chain - ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 392 1 394 395 421 54.0 1e-117 MKKVLAINSGSSSFKYKLFGLPDENVLAEGLGDRIGIQGSTFEMKLENGQKYSEEVALPD QETAVKVLLDWLKKYDVVKDLTENVGVGHRIVSGGEEFTDSAIIDEKNLQKIFDLTDYAP LHNPAEGRGIKAFMNLLPGVPQVAVFDTSFHQTMDEVHYLYSVPFEYYEKYKARKYGAHG TSVRYVANRTAELLHRDLSDLKMIICHLGSGASITAVKNGKSFDTSMGFSPLAGVTMGTR SGDVDTSLIQFIMDKEGINDIDDMIDILNHKSGLLGISGISSDMRDLENSKDKRAKLARD IFINRVIRYAGSYAVEMGGIDALVFTAGIGEHDAYIREGIMKPFECMGLDPDFEANKTNG EKLISKDGSKIAALIVPTDEELMIERDVVRLAHLD >gi|297148814|gb|ACGQ02000002.1| GENE 532 605737 - 606735 1169 332 aa, chain - ## HITS:1 COG:BS_ytxK KEGG:ns NR:ns ## COG: BS_ytxK COG0827 # Protein_GI_number: 16080000 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Bacillus subtilis # 78 332 79 329 329 174 37.0 2e-43 MKNIEAIFAQFLDVVQILQKNLNVPFAGAVTETFDNLENGKIKVEMGAPDKETVALLSKK YQELNYDKLPSTQKYMVFTLLTLKAMKEDGRNYSQMPTPPVLATVVAMVWDKLITKTELA VVDPAIGTGSLLYTVIDQLVQSHHSQNKYRLAGIDNDESMLDLADVGAHLSNYKIDLYCQ DALENWLIEKPDVIVSDLPVGYYPIDENAKNFATQAKEGHSLAHELLVEQTIKNLAPAGY AFLLVPNSLLGGKLGAEFMPWLAKKVYLQAVVQLPNDLFQNPLNQKSLLVFQNHGEGAQS RDVLLAKLGSLREEKSLVDFNQKLNEWYTKKR >gi|297148814|gb|ACGQ02000002.1| GENE 533 606936 - 607439 461 167 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1271 NR:ns ## KEGG: LGAS_1271 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 7 148 1 149 172 90 30.0 3e-17 MGLNMKIKKIKGFLLVEAIISLVITLFCLIMLTNLLSLFKQYRQAEHYGNELVLSYVQLN NFIESSNYIEIDQKGSNSKKVIFKREEASKTTNYVLEYYNSSMLRLTASQGGHIPLLMNV KQSSFDIDNQKLKVRIVEQKNGESEWFFDLTSKNKPINDELEKNDKK >gi|297148814|gb|ACGQ02000002.1| GENE 534 607417 - 607629 195 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851412|ref|ZP_05556801.1| ## NR: gi|256851412|ref|ZP_05556801.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 70 1 70 70 123 100.0 4e-27 MKQVKGFLLIEAAISLIILLFCLNLFVFCLIETRKIEANSQIRSDRAYADYVLRKYHLNK IKVHGIEYEN >gi|297148814|gb|ACGQ02000002.1| GENE 535 607616 - 608047 280 143 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1272 NR:ns ## KEGG: LGAS_1272 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 4 141 1 137 138 82 31.0 6e-15 MVKLLRNRVRAFTLFETVITLAIVTAILSIGWLNFSVIKEKMLIDSASMQVKVILNQALR RASITNKLYLIDYYESDNLLIVKDQDGKVEKYSLPEGVKIYNLAKTNIEQTGYIAPKTIT LRTKKFKKELRIQLKWGKINETS >gi|297148814|gb|ACGQ02000002.1| GENE 536 608025 - 608354 468 109 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1273 NR:ns ## KEGG: LGAS_1273 # Name: not_defined # Def: competence protein ComGC # Organism: L.gasseri # Pathway: not_defined # 1 97 32 125 129 76 49.0 2e-13 MKKFKELVKKLRKQTVKGFTLIEMVIVIAIIAILMILVVPNLTNQKNNAETKTDEAFQTT LQAQVTLAEEDGKKITSWDQLEQAKYISEKQAKRAQEKFVISNGEVVKK >gi|297148814|gb|ACGQ02000002.1| GENE 537 608365 - 609288 813 307 aa, chain - ## HITS:1 COG:L0314 KEGG:ns NR:ns ## COG: L0314 COG1459 # Protein_GI_number: 15674104 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Lactococcus lactis # 3 306 48 355 357 94 25.0 3e-19 MSLKNGLSLAESLQVMPALWSKKQRLLRKLTYLMEQGVNFSQILRQMGFGKTIASQVDLA MMQGNLNECLNQLVIINRLKEEQLKKLKAELSYPITLFVLMIFMLLFMQNFLNGQLGQED GTANLVFAILIVVASVLSAGVTRIVILLKRQDYKALKALLRYPIVGKITQLYVFYMISSE FGMMLGAGFSFPEICKLFTNQEDGSLQEQLGRKMLKQFEAGKSIGDIIRGEAFLPDNLLL FIETGAERKELGLKCTILANGFFRDLTQGLERLIVNVQPICFIFIGICIIGMYLKMLMPM YALMQSM >gi|297148814|gb|ACGQ02000002.1| GENE 538 609332 - 610315 748 327 aa, chain - ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 3 317 2 301 313 203 38.0 4e-52 MEVKHWAEDLIKSAKDMNTSDIFITGKQDFYEVNFRTSKGLIRREKLNLQFGLEVINYFK FIAQMDVSEHRRPQVGSYIFKNNKQSQVVFLRFSVLGEFSGKESLVIRLINSIQNNRYFF IEQVDLLTAAAIKRGLILTSGPTGSGKTSTMYYLAKKLAHQKVVMTIEDPVEVFEPEFLQ TQINLEAGIDYESLLKAALRQRPDILIIGEIRDKVTARLAVDAALSGHLVLATVHARSTL QTIARLKGLGIDSVELANCLNCVSYQRLIQTIDGEIACLLDIASGETLHKEINKSKTGDF INWRENLAELLKEERISGDSFTSFQEG >gi|297148814|gb|ACGQ02000002.1| GENE 539 610415 - 612028 1760 537 aa, chain - ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 8 473 6 471 473 353 39.0 6e-97 MDDLIKDKKYISWPTLTLMAFVTVIGLDDIMYNFQNQGMTVMTSWVLMLFLYVIPYALMV GQLGSIFNKGGGGLSSWVRGTDGEFLGYFTAWTYWAASIPYVVDSANEIIVDVGWAFTGS EKFQDSISNAQFTLLTFLMFIIFIFIERKFANSMEVLSTIGGAMMFIMTMLFVFLAFVGL AKSGGHMATQPFTWKTMIPKFDLKYWTTVGMLIYAVNGSELVAPYVTRMKKPKTDFPKAM IALAVMTAFLTIFGSFALGIYFDAYHLPNDLKMNGSYYVFEAVGQQFGLGHTLLYVYAWT SVFYNAALLAVLLDAMTRMLISDTGDKYMPEFLRKTTKDGLPINGYILTVSLSAFIMLLG VFLPDMNDIFNWLLNLNGIISPGVTCWIFYSFMRVRKDSKKYPSEYVYIKNDKLAYLAGL ALLVVTAVATVLGVAPQDVKQFSDIWWYELIINIIAVVVLIGLGAILPGIRRREVEYGIA FSKKQWIIMIALIIGSIILDVYLGGTKIALRGLYIFIEACIALLVCWLIGREKPIEK >gi|297148814|gb|ACGQ02000002.1| GENE 540 612249 - 613127 1092 292 aa, chain - ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 7 287 4 291 302 114 26.0 2e-25 MKIKKIFTIMALALASLTIVTACSQKTSEKSSGIKIVTSTNVYADIAKNIVGKYGNSEAI ISNGDIDPHDFEPTTKSATTINSADIVIANGMGYDNWMSKLAKSNGKTAVKVGEDIMKLK SSDNPHIWYNLDMPEEYVNYLVKKLSKLDSKHASYFKKNAENYLAQISEIKAVAKTVDGK NSKPVYVSEPVFDYALEAAGFKIGDKDFEEAIENETDPSAKIIEKMNKAISGKEIAFFVN NTQASSSTVKALVKKCKAAGVPIIEVRETMPNGVSYLKWMTQNYEKLKDVSK >gi|297148814|gb|ACGQ02000002.1| GENE 541 613205 - 613726 583 173 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0608 NR:ns ## KEGG: LBUL_0608 # Name: not_defined # Def: integral membrane protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 159 1 159 175 154 54.0 2e-36 MQKFKFSKREKLSLVLALIIFISLFISSSMTYHEQKMSSSTIKTYFGFLDPLLSHISINY GGQIHSASKDGLTSFTQFFVRKLAHFSSYFLLGLGLFAGLKRFFLNKVYAFIFIWPITIS LAVFDEYHQYLTGDRTPSVHDVVLDSIGALCGILLFLIYRLFIEKSAKKAIKN >gi|297148814|gb|ACGQ02000002.1| GENE 542 613803 - 614531 1187 242 aa, chain + ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 239 1 239 241 285 62.0 5e-77 MSGHSKWHNIQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPSGNPALRLVMDKARAAN MPKDNIQRAIKKAEGGSEEHYDEITYEGYAPGGVAVLVEALTDNKNRTATSVRTAFTRNG GSLGATGSVAYMFDRKGYIVIDRSTTDADEDQMLMDVMDAGADDLQTSDDAYEIYTDAKE FTGVRDALEKAGYKLADAELTMIPQNTTPVPADKKEQFAHLIDALEDDDDVSNVYTAADD ED >gi|297148814|gb|ACGQ02000002.1| GENE 543 614579 - 615046 582 155 aa, chain - ## HITS:1 COG:L67624 KEGG:ns NR:ns ## COG: L67624 COG0394 # Protein_GI_number: 15674184 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Lactococcus lactis # 1 152 1 144 145 108 38.0 5e-24 MKKVLFVCHGNICRSPMAEFIARDLAKKAGLSDVEFASKATTRDEINASGIGHDMDRRAK SKLDEKGIPYTYHEASQVTREDYQKYDYLFCMDEENFLDLNRITGGDPEGKEKKLLTLLG SHKDIDDPWFTGDFETSYRKIKQACEVLIENLKNE >gi|297148814|gb|ACGQ02000002.1| GENE 544 615048 - 615755 521 235 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00726 NR:ns ## KEGG: LCRIS_00726 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 226 1 229 238 115 31.0 1e-24 MRKIIYLVTKIIVSLAFAFSLLLLLTSSINMKSNNNRLYAKQLITEVADDSGYGNLSSLF ASSGLEDEMLNHLPKKTEVSITPLEVYNLSSTYEKKGKFSSNDLKLPAKTSGEKFISKYI AAGINAGLKRNNEDVKNAMNLYQLVYYALLLCFVISIILVLLGKRFAGLTAILSSVGMLV GLLFASEKATATLDEILYSGMKVTISPNFLTAVIIVVIASIVWEVVCHNYRKTLI >gi|297148814|gb|ACGQ02000002.1| GENE 545 615756 - 616091 443 111 aa, chain - ## HITS:1 COG:lin2187 KEGG:ns NR:ns ## COG: lin2187 COG0239 # Protein_GI_number: 16801252 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 2 108 6 117 118 59 41.0 1e-09 MILAGLGAALGAIFRYFLTVTIKPNHLWPKTTFFINMTGAFCLGFLFALGVDKNVYTFLG IGILGGYTTFSTLNKELVTLRKTKIGLLYAVSSYLLGLLLVYIGFYLGKMM >gi|297148814|gb|ACGQ02000002.1| GENE 546 616088 - 616471 243 127 aa, chain - ## HITS:1 COG:lin2188 KEGG:ns NR:ns ## COG: lin2188 COG0239 # Protein_GI_number: 16801253 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 7 124 3 124 129 75 40.0 2e-14 MNKLRVYLSVAAFGFLGGICRYFLSGIYQAIGTGICNLLGCFLLSCLTYFVIESQKLPEW LNTGLGTGFIGAFTTFSSFELDSLKFINANQSVAAVSYFLISIIFGFLFALLGMKVGILL GKRGINK >gi|297148814|gb|ACGQ02000002.1| GENE 547 616575 - 618482 2168 635 aa, chain - ## HITS:1 COG:SP0729 KEGG:ns NR:ns ## COG: SP0729 COG2217 # Protein_GI_number: 15900626 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 3 635 18 660 660 629 53.0 1e-180 MKMSVRKKVIITLILALPLLFQMVLMPFHIMFPYYNELALILTTLILVLAAKDYYISAWA AFKKGQANMNTLVTIGTLVAYFYSIYAMTLGHEVYFESAAVIILFVLIGDSLEEGMRKRA SGALKGLLKLQAKEAILLKNGQEIKIPVEQIKIGDTLVAKPAMKFACDGVVVKGSSHVDE SMITGESLPVKKTVGDNIVGATINYDGVINYRVTKLGQDTLLNQIVEFVKKAQASKAPIQ RLTDKFSQFFVPIVLIIAIITFEVWYVIFSAPVDRSLIFAVNVLVIACPCALGLAIPTAL MVGTNLSAKHGILIKNGQALEEINQISTIVFDKTGTITKGEPVVTDIVGDVNRVLTLAKN LEQNSEHPLAKAFLNEARKYKLPSYEVSNFQVHKGQGISGIINGQEIFIGNEKMATDLSQ KLLDAAKKLESQAKTCAYVGIAGKAIGVVAMQDIPRDNAAFVITELKKMGKKTVILTGDN QNVAREIGKNVGVNQVISEVLPNEKAKEVKKLQKEAKVAFVGDGINDAPALSTADVGVAM GSGTDIAIESGDIVLMQDNLKNLLNALQISKKIFNRIKINLFWAFIYNVIGIPIAAGIFA KQGLVLSPELAGLAMAFSSISVVASSLLLNRTKFN >gi|297148814|gb|ACGQ02000002.1| GENE 548 618482 - 618850 412 122 aa, chain - ## HITS:1 COG:SP0728 KEGG:ns NR:ns ## COG: SP0728 COG4633 # Protein_GI_number: 15900625 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 122 2 123 123 95 32.0 1e-20 MRSFSILIAVFIIGFIIWWFFIRKVKDTELAMADQNKQKAQIVIQGGYSPSTLVLQKGIP AEVEFLQKDATACLAEVRSAELALDKKIAPGEKVTIKVPTDQAGEYNYSCGMNMFHGKVV VK >gi|297148814|gb|ACGQ02000002.1| GENE 549 618865 - 619338 530 157 aa, chain - ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 21 149 4 132 144 98 37.0 4e-21 MLTNVNDGDEIMTEKVMKMNISDAEWEVMRIIWTLDEVKSSEIINQLSERMSWTESTIKT LIRRLVNKGLVKTRKKGRAYIYSAMVSENEMMYQVAKDMFAHMCDMHKGSLLIRLIKEIP LSKSAINEIQAELNQMEQSAPESVPCDCLHNNQKHHC >gi|297148814|gb|ACGQ02000002.1| GENE 550 619386 - 620207 807 273 aa, chain - ## HITS:1 COG:lin0298 KEGG:ns NR:ns ## COG: lin0298 COG0561 # Protein_GI_number: 16799375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 269 4 267 270 155 34.0 7e-38 MIATDLDGTLLTSDHRIGSKTKKALQMANKMGIKVVPASGRPLPGVLPYLKQLNISGHSN YAILFNGGVVQRLTGEKLISNDLTYEDLKEMLHYQQLGKVNLHFMTENHYYTMDRNLSII MAAASALNNMKIRVRDLPQIPQDFRFIKAEFSGSASEIKDFRQNLPKVFFEKWNASSSGI SSLGTDTIEVNNLVASKGLAIHQLAHRLGFHENEVVVFGDQGNDLSMFENNNFYKVAMGN AISDLKERADLITKDHDDDGIAYALKKIITSQV >gi|297148814|gb|ACGQ02000002.1| GENE 551 620228 - 621037 958 269 aa, chain - ## HITS:1 COG:lin0298 KEGG:ns NR:ns ## COG: lin0298 COG0561 # Protein_GI_number: 16799375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 269 3 268 270 155 34.0 8e-38 MTIKMLAVDLDGTLLTTHNTIAAETQRMLTLARKQGLKVVLASGRPLSGILPYAAQLGLE GDQQFATVFNGGVAQSYSGKVLFSHEQNLHDVETMKHLQRLAHVNMHFETTEAFYTFDRI INVQMGINASTTNNEIHVCDLKDLKKDFSYIKCEFTGSVDEVARFRKRLPDWVFDQYNVV RSAENIIEFNNPAASKGLALVELANRLGFEEDEVMIFGDEGNDISMFSNPHFKKIAMGNA IDEIKDLADYVTDDNNHNGIAKALKKFVL >gi|297148814|gb|ACGQ02000002.1| GENE 552 621137 - 622489 1825 450 aa, chain - ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 1 449 1 446 448 549 63.0 1e-156 MLKYFGTDGVRGIANEVLTPEMAFKLGRMGGYVLTKHKKDGEKAKVLVSRDTRISGQMLE YALISGLLSVGIEVLELGVITTPGLSYLVRAQGADAGVQISASHNPVQDNGIKFFGSDGL KLSDAKEEEIEQLIDAPEDTLPRPSALGLGTVTDYHEGASKYLQFIEQTIPEDLDGIKVV VDGANGASSHLISRLFADLNIDFTTIATHPDGLNINDHVGATHTKKLQEEVVKQGADLGL AFDGDADRCIAVDENGNEVDGDHIMYVIGTYLAEHGRLKKNTIVTTVMSNLGFTKALERA GLKNIRTQVGDRYVSEEMRANGYNLGGEQSGHVIISDYHNTGDGMLTGLHLMLVMKKTGK KLTELLKDFKEYPQRLINVPVKDKKAWKQNEKVMAVIKEVEDEMNGDGRVLVRPSGTQEL LRVMAEGPTQEQTDAYVNKIVEVVKVEMGE >gi|297148814|gb|ACGQ02000002.1| GENE 553 622508 - 623476 1205 322 aa, chain - ## HITS:1 COG:lin2224 KEGG:ns NR:ns ## COG: lin2224 COG4856 # Protein_GI_number: 16801289 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 49 322 45 320 452 123 28.0 4e-28 MNKFFDKPWFYKIIALLAATLLVIYIDTTQHGYFTQGEQTTSQQTATKKVTISVPLQVSV NTDRYYVTGYPEKVKMTLSGASALVTSTQNTQNFRVYIDLTKLSVGKHTIKVKVTNLNKQ LAYSINPQKITVNIQRRKSRSLPVQIEYNKNAVPDAYKIGTAKADPSVVSVTGAKSEVNQ INKIIAKVVLPTNTTKTFEQQVMLVAEDKKGSQLNVVINPLAVNVKIPITLPKKTVKIKL NPKNESSDKVYSLTAETTSVTIYGKSSALKKIKELDTDVDLKNVTSSQTKKIKLKLPDGV IKASEEVVDVKVTVANSAQSSS >gi|297148814|gb|ACGQ02000002.1| GENE 554 623473 - 624315 731 280 aa, chain - ## HITS:1 COG:lin2225 KEGG:ns NR:ns ## COG: lin2225 COG1624 # Protein_GI_number: 16801290 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 271 2 269 273 279 52.0 4e-75 MTFNFTNFFTWQNLSILLDILVVWYILYLLLMLIKGTKAVQLAKGLVIIWVARQVAGWIG LNTFAYIVDQLLSWSVIGVIIIFQPEIRRGLEHLGRMPFFNGNAKTERQMSEKFVAELDK AIQYMSKRRIGALITIQRNTGLDDYIETGIGLDAEVTGALLINIFIPNTPLHDGAVIIRN GRIAVAAAYLPLSDNSMIPKKLGTRHRAAVGISEVTDAITIVVSEETGGVTITKNSQFML DMTRDEYMKYLTSELVPKDEVRQTVIQKLLGRLWNWGAGR >gi|297148814|gb|ACGQ02000002.1| GENE 555 624352 - 625425 952 357 aa, chain - ## HITS:1 COG:lin0800 KEGG:ns NR:ns ## COG: lin0800 COG0687 # Protein_GI_number: 16799874 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Listeria innocua # 1 357 1 357 357 390 55.0 1e-108 MKKLIWGAAIILALCLGLSLAANKLDSSAATSSKKTLIIYNWGDYIDPSLITKFEKQTGY KVIYETFDSNEAMYTKVKQGGTSYDLVIPSDYMITKMRKGHLLDKINTDKLSNFKNINKQ FLHQSFDKKNQYSVPYFWGTLGIIYNDKYVKPGEIQHWNDLWNSKWKNSILLVDSARDIM GSSLVSLGYSMNTTNSVELKLAKTKLDSLGANVKAIISDEIKMYMIQNEAALAVTWSGEA SEMLSNNSHLHYVVPEEGSNLWFDNMVIPKTAKNKKAAYAFINFMLDAKNAAQNAEYGGY ATPNEAAMKYLPKSIRDDKQFYPDKNTIKHLQVYKDLPPKKVQEYNDLFLEFKMYSR >gi|297148814|gb|ACGQ02000002.1| GENE 556 625422 - 626231 929 269 aa, chain - ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 2 258 3 259 268 291 65.0 8e-79 MKKVWGRLYLAFVLLILYLPIFYLIVFSFSSGKNMDVFRGFTLSHYADLFADGRLLAIFL DTIMLALLSSLIATVIGTMGAIAIDATKNKKKKTVLLSLNNVLMVSPDVIIGASFLVLFT VLGLSLGFGSVLLSHIAFSIPIVVLMVLPRIKEMDKSLIDAARDLGANNWQVYSKVLIPA ITPGILSGLFMALTYSLDDFAVTFFVTGNGFTTLSVEIYSRARQGIDLEINALSTLMFLI VLLLVGGYYLLTTRHSHKGNKPEIGGLIK >gi|297148814|gb|ACGQ02000002.1| GENE 557 626228 - 627040 675 270 aa, chain - ## HITS:1 COG:lin0798 KEGG:ns NR:ns ## COG: lin0798 COG1176 # Protein_GI_number: 16799872 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Listeria innocua # 2 264 3 265 269 286 62.0 3e-77 MKNKRWFFLLPYSLWIGLFVVLPLLMIFWTSLTGNGSISLENFSNFFTNATFLRMTLNSF WYALLITLFTLLVSYPVAYILTKLKNQQFWLLLIILPTWINLLLKAYAFIGIFGKDGLVN NFLHLFGIGPVNILFTNFAFIFVATYIEIPFMILPIYTAIKEIDPALINAANDLGASKWQ TFRYIIWPLSLPGVESGVQAIFIPSLSLFMLTRLIGGNRVITLGTAIEEYFTTTMNWSMG STIGVILIVMMVAVMVMTGEKNKRKKEVKL >gi|297148814|gb|ACGQ02000002.1| GENE 558 627030 - 628130 1297 366 aa, chain - ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 3 359 5 361 364 453 64.0 1e-127 MNIIELKNVTKRYDDGFVALKDINLEIESGKFYSLLGPSGSGKTTILRIIAGFTEATSGQ ILFDGQDITNLDASKRHLNTVFQNYALFPHLDVYENVAFALKLKKRPESEIKQAVKEALH TVRLDGYANREISELSGGQQQRVAIARAIINKPKVLLLDESLSALDKRLRKEMQFELRAI QKKLGITFIFVTHDQEEALAMSDEIFVLNEGQIQQSGTPVDIYDEPVNDFVARFIGDSNI VPGRMVQDYEVEFVNKHFECADAGINPREKVEVVLRPEDLDIVEPDKGKLIVTVESQLFL GDHFEIKAHDADENEWLIHSTNPTEVGKEVGIFFDPEDIHVMRFGESEEEFDARLEKYEG EDDNEE >gi|297148814|gb|ACGQ02000002.1| GENE 559 628127 - 628906 1085 259 aa, chain - ## HITS:1 COG:SPy1101 KEGG:ns NR:ns ## COG: SPy1101 COG0812 # Protein_GI_number: 15675084 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 2 254 43 295 295 268 53.0 9e-72 MLVAAANEDGLDITVIGNASNLIISDKGIAGLVIILTDMNEIKLDGDIVEAQAGATIIKT AFFAANHGLSGLEFAAGIPGSVGGAVFMNAGAYGGESEQAISEVTVLTRTGEIKHYSHDE MQFSYRHSLVQNTGDIVVSARFKLKAGDKLKILDEMNYLNALRAYKQPLEYPSCGSVFKR PTGHFVGPMLIKAGLQGKQIGGAQLSTKHAGFIVNKGGATATDYLNLIHYIQKTIKEQRG IDLHTEVRIIGRDIEGESK >gi|297148814|gb|ACGQ02000002.1| GENE 560 629143 - 629676 572 177 aa, chain + ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 165 1 164 306 114 39.0 8e-26 MNFIAMDFETANRHPESACSLALVMVRNNKIIDRFYTVINPQMPFDGRNIQVHQITPDDV KDAPTMAEVWPKIKALYQPGMLVAAHNARFDANVLKMSLARYDIDEPHYLVIDTLKTSRL FEPDLPNHKLNTVAEALDVELWHHHNALSDSEACAGILIKQNEKMGDEAIKNLIEQR >gi|297148814|gb|ACGQ02000002.1| GENE 561 629722 - 630198 621 158 aa, chain - ## HITS:1 COG:BS_ydiB KEGG:ns NR:ns ## COG: BS_ydiB COG0802 # Protein_GI_number: 16077658 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Bacillus subtilis # 1 127 4 129 158 118 44.0 5e-27 MKLEINSAQEMQKLGASLGKVAKPGSLLLLNGDLGAGKTTMTQGLARSLGIRRPAKSPTF TIVREYREGRLPLFHMDMYRLENDDLASIDLNGYLNEQGIVVIEWPEIIMNDLPDDYLQL TLKRVDDSWDSTKRVVEVNAQGKQAKDWLEDTLAKFEE >gi|297148814|gb|ACGQ02000002.1| GENE 562 630198 - 631175 1156 325 aa, chain - ## HITS:1 COG:BS_pta KEGG:ns NR:ns ## COG: BS_pta COG0280 # Protein_GI_number: 16080818 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Bacillus subtilis # 3 322 4 323 323 362 58.0 1e-100 MSIFDELKEKIVGQEKVIVFPEGEDERVLKAAVKLKNEGIIQPLVLGDETQIKQTAKTHE LDLTGLKIINPKNDIRKDDFAKQYYELRKGKESEEQAKKQISDPNYFANMLVYNGLADGC VSGAAHSTADTVRPALKIIKTQAGMKRVSGQFIMEKGQQRYIFSDCAMNIDPDADTLVEI AYQAAQTAKMVGLEPKLAFLSFSTMGSAKGEMVSKVQDATASFKEKYPEISADGEMQFDA AFVPSVGAKKAPDSNVAGHANVFIFPELQSGNIGYKIAQRLGDFTAIGPILAGLAKPVND LSRGCSSQDVYEAAILTAAQSLDVE >gi|297148814|gb|ACGQ02000002.1| GENE 563 631187 - 631876 573 229 aa, chain - ## HITS:1 COG:BS_ung KEGG:ns NR:ns ## COG: BS_ung COG0692 # Protein_GI_number: 16080848 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus subtilis # 1 219 1 220 225 258 59.0 6e-69 MKELIGNDWDQVLGPVFSSESYQKLHNFLKEEYASKQIYPDMYHIFTAFKLTSFKDTKVV ILGQDPYHNPGQATGMSFSVNPGIALPPSLKNIYQELYDDVGCIPVKHGYLKKWADQGVL LLNAVLTVPYGHANGHQGKGWEEVTDQAIKALSERGEVVFILWGKFAQNKIPLIDESKNV IIKSAHPSPFSARYGFFGSRPFSRCNTALTKWGKRAIDWQLPQEVEIEK >gi|297148814|gb|ACGQ02000002.1| GENE 564 631969 - 632484 555 171 aa, chain + ## HITS:1 COG:no KEGG:lhv_0746 NR:ns ## KEGG: lhv_0746 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 160 1 161 173 170 49.0 2e-41 MKLILLFNQQKNYGQIPVVDPAGQTQFFIQGKLHNSNHTLFLTDINHNEIGRLYQDGRSI LTSYTIDIIDYDLAQVKQVTNVEFPMFLTKKNYLITGSTKKGSYEFRSTFKKIASCESMI IDSGLALVCDIKKYQDIPYILLVAGLFSQWSATPLELPKFKFNNQLSTDCN >gi|297148814|gb|ACGQ02000002.1| GENE 565 632488 - 632943 540 151 aa, chain - ## HITS:1 COG:SPy0504 KEGG:ns NR:ns ## COG: SPy0504 COG0691 # Protein_GI_number: 15674609 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 1 150 1 150 155 170 62.0 9e-43 MKNETNNVLAQNKKASHDYFIKETIEAGIALTGTEIKSVRARRIQLRDGYVQIYNGNAYL ENVHISEYKQGNIYNHDPLRRRQLLLHKKEIRKLAEIQAQQGMTIIPLKVYLKKGFAKIL LGVGQGKKQYDKRETIKKRDQERELRRKYRV >gi|297148814|gb|ACGQ02000002.1| GENE 566 632956 - 635280 1375 774 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 11 722 7 703 730 534 40 1e-150 MAQDERVLATILEIFRHNPQRKFRVNQLERMSSRDHIKFAELVKALTFLEQEKQIVTDGN GEYQLASVDTEITGIFRANEKGFGFVRIDDEENADDIFVGPDNTLLALDSDYVRVKIIAN GNPWNGKGPEGKVIEILERGVETLVGEFYPLTDVQVKLSGFCGYVISSNKKFKNYKIYTP VDGITPQMGDMVKVSISQYPTEDMPENMQGAILETIGNKNDPGVDIMSIVAAHDIRTEWP EDAMKQANEIPDHIEQGELANRVDIRDQPAVTIDGDDSKDFDDAVVLWKLPNGNYHLGVH IADVAHYVKENSPLDKEAYQRGNSTYLVDRVIPMLPFRLSNGICSINEGVDRLVLSCDME ITPEGKRVAYDIHPSVMRSHGRLTYNKVNEALTKPANELEEKYAKLQPMLKKMASLHEAL YNQRHDRGAIDFEEPEAKIIVDEKGKPVDIVLHNRGTAEKMIESFMLLANETVAEAFFKK HVPFLYRVHETPDAERIQSFFEFVSALGLNIKADPNDVKPIDLQKVVTKTLGTPEEAVVQ MVMLRSLKQAHYSDEPLGHFGIAAEFYTHFTSPIRRYSDLMVHRMIHEYTDSNLSEDTQK HFGPILPDVAEQTSTQERKSIDTEREVNDLKMTEFMSDHVGEHFDAVISSVTSFGMFIQL PNTVEGLIHISNLTDDFYNFDEKTLTLTGRGTHRQFKIGMPLKVTLINANVEQHQLDFEI YDPNAPKKEHNDRGIRRPRRRDDRLGRGSRNRDGNRSGHKSRNSRDNRGRRRYK >gi|297148814|gb|ACGQ02000002.1| GENE 567 635341 - 635559 341 72 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00448 NR:ns ## KEGG: LCRIS_00448 # Name: secG # Def: preprotein translocase # Organism: L.crispatus # Pathway: Protein export [PATH:lcr03060]; Bacterial secretion system [PATH:lcr03070] # 1 72 6 77 77 85 90.0 6e-16 MTLLIIVSILIVIATMMQPQKQQDALNALSGGAVFSGQSKKRGFEAFMEKVTSVLLVLFF LLAFVLAYLSTK >gi|297148814|gb|ACGQ02000002.1| GENE 568 635719 - 637017 2285 432 aa, chain - ## HITS:1 COG:BS_eno KEGG:ns NR:ns ## COG: BS_eno COG0148 # Protein_GI_number: 16080443 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Bacillus subtilis # 1 430 1 430 430 582 68.0 1e-166 MSVITDIHAREVLDSRGNPTVEVEVYTELGGFGRAIVPSGASTGEHEAVELRDGDKSRFN GTGVLTAVKNVNTEIAKAVIGLDVTDQRLIDQTMIDLDGTPNKGRLGANAILGVSLGAAR AAADELGMPLYEYLGGPNAHVLPTPMMNVINGGKHADNNVDIQEFMIMPVGAKSMHEAVR MGAETFHALKALLKERGDSTAVGDEGGFAPNLANNEEPFEVLVEAIQRAGYKPGDDIAIA MDCAASEFYNKETHKYVTVADGREYTAEEWTSLLESLVEKYPIISIEDPLDENEWDDWKG FTDRLSKKVQIVGDDLFVTNTSYLKKGIQMGVANAILIKVNQIGTLTETFEAIEMAKEAG YTAIVSHRSGETEDTTIADLVVATNAGQIKTGSMSRTDRIAKYNQLMRIEEELDSAAEFK GIHSFYNLHKQF >gi|297148814|gb|ACGQ02000002.1| GENE 569 637077 - 637832 852 251 aa, chain - ## HITS:1 COG:SP1574 KEGG:ns NR:ns ## COG: SP1574 COG0149 # Protein_GI_number: 15901416 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 2 249 3 250 252 331 65.0 8e-91 MRTPIIAGNWKLHMNPAQTAEFVKSVKDKLPESNKVESVIAAPAVDLDALIKASEGSNLS VAAENCYFEDEGAFTGETSPKVLKEMGVKYCIIGHSERRDYFHETDEDINKKAKAIFRNG LLPIICCGESLETREAGKEEEFVVDQIKKALDGLTSEQVSSLVIAYEPIWAIGTGKTATS DQAEEMCKTIRESIAKLYNEETAENVRIQYGGSVKPANVKELMAKPNIDGGLVGGASLEV ESFLSLVNYQD >gi|297148814|gb|ACGQ02000002.1| GENE 570 637847 - 639058 1513 403 aa, chain - ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 403 1 396 396 508 67.0 1e-144 MAKLIISDLDVKGKKVLVRVDFNVPIKDGVIGDDNRIVAALPTIKYIIDNGGKAILLSHL GRIKSDADKKELSLAPVAKRLGELLEKDVEFVPSNEGKEVEDAIAKMNDGDVLVMENTRF QDIDNDFGKRESKNDPKLGEYWASLGDLYVNDAFGTAHRSHASNVGIATAMKAEGKKVAA GFLMEKEIKFLGNAIANPVHPFVTILGGAKVSDKISVITNLIPKSDHILIGGGMAYTFLA AQGHKIGKSLFEADKVELAKELLEKANGKIVLPVDNVAATEFSNDASREVVGDDIPDNEM GLDIGPKTVELFRKTLQGAKTVVWNGPMGCFEMPNFAEGTLEVGRAMADLPDATTIIGGG DSTAAAKQLGIAPKITHISTGGGASLEYLEGKELPGIECISDK >gi|297148814|gb|ACGQ02000002.1| GENE 571 639164 - 640180 1290 338 aa, chain - ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 338 3 333 333 424 66.0 1e-118 MTVKIGINGFGRIGRLAFRRIMDLGEKSSDIEVVAINDLTTPALLAHLLKYDSTHGTFNH EVSATEDSIVVDGKKYRVYAEPQAQNLPWVKNDGVDFVLECTGFYTSKAKSQAHLDAGAK RVLISAPAGNDLKTIVYSVNDDTLTADDKIVSAGSCTTNSLAPMASALNKEFGIEVGTMT TIHAFTSTQMVLDGPVRGGNFRAARTSSANIIPHSTGAAKAIGLVIPELNGKLQGHAQRV PVVDGSETELVSVLSKKVTADEVNAAMKKYESASFAYNDDQIVSSDILGMTAGSIFDPTQ TEVTTAGDKQLVKTVAWYDNEYSFTCQMVRTLLKFATL >gi|297148814|gb|ACGQ02000002.1| GENE 572 640238 - 641269 888 343 aa, chain - ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 9 342 9 342 348 284 45.0 2e-76 MDTDFTLLQNLVPDVLKISRQRYQVLEQISLRYPVGRRAVAQQLGMSERTVRTETEYLKK LGLIEIKPFGMHLTEKGEETLKDATSLINRLFNASQAEIKLAKKLKIARAIIVPGDADLQ ERVSILMGEKLNSALDLLLPLGSSIITVLGGATLAKASKVLSSSLSKNRDLEFVPGRGAL GESVETQSSTIVQEMAKATGGKYKTLYLPENVSKDAYRSLIRDPAISDVLQDISQCDVAI HGIGLAEDMAKRRGYDSVALSRIRATGAVSECFGCFFDENGKMIERIPRIGLQFEDLSKI PHIFAFAGGHSKAKAISSYMHNAPSQTWLITDECASDLILKGQ >gi|297148814|gb|ACGQ02000002.1| GENE 573 641622 - 641948 352 108 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227521446|ref|ZP_03951495.1| 30S ribosomal protein S9 [Lactobacillus gasseri JV-V03] # 1 108 1 110 110 140 61 2e-31 MAITVNLYYIGKNGSALKFVQEMKNLGIVDGIRKEVGNIRYDYFQSLDDPEKILLIDSWE DQTAIDAHHQSHFMKELAKLREKYDLHMEVERYQQIKNNAKDKKYIRK >gi|297148814|gb|ACGQ02000002.1| GENE 574 642049 - 643644 1850 531 aa, chain - ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 528 7 534 545 542 53.0 1e-154 MKKNQISLFSGVMLALSSLIGSGWLFGAGSAAQVAGPSSIISWIIGAAIMMLIAFNYVEL GTMFPESGGMSRFAEYSHGQLLGFLSAWANWVSLITLIPIEAVACVQYMSSWPWSWANWT RGFFHNGTITNEGLWAVYLFMFVFSLINFGSVKLLTRFTSLIAVFKLLIPSLTIIFLILA GFHSSNFGNNVSTFMPYGTKGIFQAVTVSGIILSYDAFQTVINLAGEIEKPHKNIFRGVW ISLSVTAIIYVLLEVAFVGAVEPTMLAKVGWHGVDFASPFADIAILLGLTWLSVLLYMDA FISPFGTGVTFVATSARTLMAMTRSGNVPAFLGRVNKKYKTPRYAMVWDLILAMALVFFF RNWSELATVVSVSTFVAYATGPVAAISLRKMRPNFKRPFKSVHLKWVAPVSFVLTGLVIY WAMWPTTIEVIFVVLLGLPIYFYYQFKKENKNFAQQFKSSLWLLSFLAFISIISYLGSSA FGGNNTFKYPWDFVIVILASIGFYIWGVKSSYDGEDLKDAEKVNKDVRIED >gi|297148814|gb|ACGQ02000002.1| GENE 575 643813 - 645237 933 474 aa, chain + ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 6 469 5 470 473 395 46.0 1e-110 MTNENHNKKIAWTTLAMMAFSTVWGFGNVVNGYIYFDGTKVIFSWILMFALYFIPYALMV GELGAVFQKSEGGVSSWVDATLGPKWAYYAGWTYWACHIVYISSKGTGGLRAMAWGIWGD ITHFDALPTAWVQIATLIIFLFFCWIATKGLSILKTLATLAGTSMFIMSILFIIMMFAAP AINPHAGFNNIDWNLKSLIPTFNWKYFTSLSILVFGVGGCEKISPYVNKVKDPSRGFPKA MILLATMVIISAILGTVAVAMMFSTKEINADLNNYISNGAYWAFQKLGEYYHLGNLFLYI YAWCNVIGQFAVLVLSIDAPLRMLLGSKQAKEFIPRKLLKKNRYGAYINGIWMVVILSGG LTLAQALVPSSTAVMAQLVKLNSTTMPLRYLWVFAAYIALRKQTDKFTSNYKMTKNQGLA LFAGFWCFFVTGFSCLVGIYSPDPFTLFLNILTPIVLTALGVILPIIRKHEDKN >gi|297148814|gb|ACGQ02000002.1| GENE 576 645325 - 645792 487 155 aa, chain + ## HITS:1 COG:SA1678 KEGG:ns NR:ns ## COG: SA1678 COG0735 # Protein_GI_number: 15927435 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Staphylococcus aureus N315 # 1 151 1 146 148 103 37.0 9e-23 MEVEKLSEEKIADQAAKIIRAHGLKRTPQRLKILIYLMTHHNHPTAEMIFNDISLSDEKT GIATVYNTLNTFVDLGFVIEINNGNDGSTHYDFFAKPHFHVICTNCGKIADVEYANFDKI ESKMRQETEKQTGYITRSSHIKIYGLCPDCQKLEK >gi|297148814|gb|ACGQ02000002.1| GENE 577 645886 - 646467 773 193 aa, chain + ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 2 191 3 192 198 263 70.0 1e-70 MLVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDIS LYINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVL IHQPLGGAQGQQTDIQIAAEEILKSRKKLNEILHETTGQPIEKILKDTERDNYLTAQEAK DYGLIDEIMTNMK >gi|297148814|gb|ACGQ02000002.1| GENE 578 646519 - 647712 1047 397 aa, chain - ## HITS:1 COG:no KEGG:Ldb1448 NR:ns ## KEGG: Ldb1448 # Name: not_defined # Def: putative permease # Organism: L.delbrueckii # Pathway: not_defined # 1 383 1 388 404 366 52.0 1e-99 MKKYRNIYYLVNLLYSLGVAVWSGTIYLFMHHIGYSYGEINFFLSIFWVVTFIAEIPSGF IADHLGYLKTASISNLVRATGLAVLALSPKNFLLLALSAFLTALGDSLMSGTLPSWIANK AALNNEKDQLGEIYSTYSLIASPFNMIVGFIGAHFLANIDLRLPLLTGAAFLAVTFFILV ALFKYDSQAGTQKLSFKELNVVSEVKEVITNEYQTFKFILLCLPIWFISSGPIDQWQLYF QHGKRVDSGSILVAIGIVGYIGSYIYRYLYKKKINQLFLLIFSVIFLTISIELVVMLKGN YYLALGIFMIHNLFGTIQQMIQGTLLQESIKTEKSRATIVSVCNALDAGVSVLILSLNGY LSDHYGIGLAWQSLAIVGLVLFFGMLIYYKRGRVKQA >gi|297148814|gb|ACGQ02000002.1| GENE 579 647860 - 648852 1177 330 aa, chain - ## HITS:1 COG:FN0487 KEGG:ns NR:ns ## COG: FN0487 COG1052 # Protein_GI_number: 19703822 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Fusobacterium nucleatum # 1 314 1 322 338 198 39.0 1e-50 MKIAVFSPSESERKLIAATEKKFGCELKLIDDPLSAENVDQVADCNGVLLKPLGNLDDEI VYKKLADYGIKSIGLRIVGTNTIDFDLAKKYHLTVTNVPVYSPRAIAEMAVTQAMYLNRK IGEFKANMDKGDFTNPDSLISNEIYNKTIGLIGVGHIGSAVAQIFSAMGAKVLAYDVIYN PEVEPYLTYADFDTVLKEADIISLHTPLLKSTENMIGKKQFAEMKNDAILINAARGELVD TAALIEALEKHEIAAAGLDTLAHESSYFFKKVDDAQIPADYKKLAAMPNVIVTPHSAYFT KTSVRNMLEISLKDTLAIAKGERAHFVVSR >gi|297148814|gb|ACGQ02000002.1| GENE 580 648918 - 650132 772 404 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851458|ref|ZP_05556847.1| ## NR: gi|256851458|ref|ZP_05556847.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 404 1 404 404 494 100.0 1e-138 MKTLTIRNSLIFIVYGLLLDYAIRQAMILLFYFIALVSIGGIVYFLFKNSSRILTFTIWN VLSLMLLIHIVHSNLKYELVIIAGLLLLIALNNQKQTIFNFHFQVITFVIMALSIVFLNS KLNITNASIVAGLFIIGFGVVLFLSKEKSMVFLLLGAILSLVTRFLIGMTQGITTAVLYF LVIALWLHLDQLFLYSLAWLKQKHVTFDANVIRRSSFVLTFLIGLLGLFATNLNYVSGVS GIWILYSVFMARAKDKFIYFDFSLVIALLLILKLNSTIFAIAILVLELLKLVLKAYSQPL PKMYFSLLSCAFIGILTLQGTVIVNYRLFIFVLLTFIAAILLRFEKGISKLGLVFIQLVL MFVLPLTDSKAGLAFFLAVGIYILVEEVLLLAFRRKISKITSNF >gi|297148814|gb|ACGQ02000002.1| GENE 581 650273 - 651211 1232 312 aa, chain - ## HITS:1 COG:lin2615 KEGG:ns NR:ns ## COG: lin2615 COG1481 # Protein_GI_number: 16801677 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 312 1 310 323 324 54.0 1e-88 MVSYASEVKKELTNLEVHPEHAKAELSAFLRMNGILNLHDHQLSLDITTENPAIARRIFT LIKVAYNIEPLLIVSRKMKLKKNNQYLVRLNQQVNEILADLEIVDPEKGFVIGVPKKVLE EEQRAMSYLRGAFLASGSVNNPETSRYHLEIYSVYEAHNDDISYLMNHYFNLNSKKTKRR SGYITYLKEAEKIGDFLHIVGAFNAMLAFEDLRIMRDMRNSVNRLVNCDTANLKKTANAA ARQVEDIQLIDEKLGLDQLPEKLESLARFRLENSDLTLKEVAEQVPDGPISKSGVNHRFQ KIREIADKLREG >gi|297148814|gb|ACGQ02000002.1| GENE 582 651204 - 652241 933 345 aa, chain - ## HITS:1 COG:L189428 KEGG:ns NR:ns ## COG: L189428 COG0391 # Protein_GI_number: 15672944 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 17 333 4 320 327 345 52.0 1e-94 MAYAESRIIRVIKGRRPKVVVIGGGTGLPVILNALKEKNAEITAIVTVADDGGSSGAIRN YINVVPPGDIRNVLAALSDLPQEAKDIFQYRFDSSDSFFAGHAIGNLIIAALNEMHGNIF DAVQSLSKMMKVDGHVFPASNEPLTLNAEFVDGSREAGETEITSKDKRIKRVWVTDTNDD KEPEAVLPVLAAIMQADAVVLGPGSLFTSILPNLMISNLGEAIRQTSAEVIYICNIMTQK GETDHFSDADHVRILNAHLGGNYIDTALVNGAKIDMSKFNPADYDEYLEPVSSDFAGLRE QNCRVITDDFIDQRHGLVFHDGEKVAKEIIDLAFEAHCRRGENNG >gi|297148814|gb|ACGQ02000002.1| GENE 583 652251 - 653126 873 291 aa, chain - ## HITS:1 COG:SP1566 KEGG:ns NR:ns ## COG: SP1566 COG1660 # Protein_GI_number: 15901409 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 287 1 288 296 311 53.0 7e-85 MASETRQLLIVTGMSGSGKTVAAHSLEDLGYFVVDNLPPTLLGSFWDLMNTSDDFNKVAV LIDLRVKSFYKDLENEINSLEDNGNTQATILFLDASDDVLVARYKETRRLPPLARSGRLL DGIQKERAILSPIKNISNIIVDTSSLPPKDLKAKLTGLFSEHGRKPFTVEVMSFGFKYGM PIDADIVMDVRFLPNPFYIPNLKPFTGLDKRVFDYVMDKDVTKVFYKKLLDLIETTIPGY IKEGKEKLTIAIGCTGGQHRSVSIAQQLARDLSKKYPVDISHREISRYIRK >gi|297148814|gb|ACGQ02000002.1| GENE 584 653223 - 656063 2928 946 aa, chain - ## HITS:1 COG:SP0186 KEGG:ns NR:ns ## COG: SP0186 COG0178 # Protein_GI_number: 15900123 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pneumoniae TIGR4 # 2 937 1 943 943 1305 70.0 0 MVRDKIEIHGAREHNLKDIDLTIPKDKLVVVTGLSGSGKSSLAFDTLYAEGRRRYVESLS SYARQFLGQMDKADVDSIDGLNPAISIDQKTTSHNPRSTVGTVTEINDYLRLLWARVGHP ICPNDGTLIERQSVDQMVKRVMDLPERSKIQILAPVIRQKRGMHQEVFKKVARAGFVRLL VDGEMHEVSDEFDLDKNKKHSISIVVDRLIIKDGIKSRLTDSIESALRLSEGYMDVDVIG GQVLNFSEDYACPKCGFSVGEMEPRLFSFNAPFGACEACDGLGMKLAVDEDLVIPDKDKT LNEGAIAPWANSDYYKMMLAQACQSLRINMDKPFKKLTERQRKIVLYGSDKKIKFHLEGD FGVNDATQAFEGVMNNIDRRYHHPMSQFMREVMGKYMTELTCAVCHGKRLNQKALAVKVM GQDISEVSDLPIGKELTFFKSVKLSEAESMIAKPILKEVIDRLTFLVNVGLDYLTLSRSA GTLSGGEAQRIRLATQIGSNLSGVMYILDEPSIGLHQRDNDRLIASLKKMRDLGNSLIVV EHDDETMKQADYLIDMGPGAGSFGGKVMAAGTPEEVMANPNSLTGQYLSGKKFIPVPTER RKGNGKKITVSGACEHNLKNITVDFPLGKFVVVTGVSGSGKSTLVNTILKRALAQKLNHN SAKPGKFEKITGYKDIEKIIDIDQSPIGRTPRSNPATYTSVFDDIRALFAQTNEAKIRGY TKARFSFNVKGGRCEACHGDGIIKIEMNFLPDVYVPCEVCHGRRYNSETLEVTYHEKNIA QVLDMTISEAREFFSKIPKIHRKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLASELQK LSTGNNFYILDEPTTGLHVDDIKRLLVVLQRLVDQGNTVLVIEHNLDVIKTADWLIDLGP EGGEGGGQIVTTGTPEEVAECEKSWTGKYLKPVLQRDKNRTLENEK >gi|297148814|gb|ACGQ02000002.1| GENE 585 656050 - 658095 2071 681 aa, chain - ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 663 1 659 662 912 69.0 0 MIKRQTNRKFDLVSKFKPAGDQEQAIDKLTAGFKAGAKEQILQGATGTGKTFTMANIIAK LNKPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI NDEIDQLRHRATSALMERNDVVVVASVSCIYGLGDPKEYAASVLSLHEGQEYERNVLLRD LVNIQYDRNDIDFQRGRFRVRGDIVEIFPAGNSDHAFRVEFFGDEIDRIVEVDSLTGEVI GERDQISLFPATHFMTNEEQMKQALKRISQEMDLQVKKFEGEGKLLEAQRIKQRTTYDME MMSEVGYTNGIENYSAPIEGRKAGEPPHTLLDFFPDDFLILIDESHATMPEIRAMYNGDR KRKETLIDYGFRLPSALDNRPLKLEEFEKHVNQILYVSATPGDYELNRTNKVVEQIIRPT GLLDPKIEVRPIQGQIDDLVGEINKRIERDERVFVTTLTKKMAEDLTDYLKDLGIKVRYL HSDIKTLERMQILHDLRKGDFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLI QTMGRAARNSDGMVIMYADKITDSMKIAIDETRRRREKQIAFNEEHGITPKTIVKPIRDV ISITKPVKEEKEKESFADLNFDELTKKQKQAMIKNLTDQMQDAAKKLDFEAAANLRDAIM ELQNSVHAPKKHKGKDFDGKR >gi|297148814|gb|ACGQ02000002.1| GENE 586 658193 - 659917 2081 574 aa, chain - ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 572 1 570 572 517 45.0 1e-146 MTARQAYENWLKAENLPDYLQRQLKELGQNPAWVDDAFGTDINFGTAGMRGLLEPGTNRI NVVTVGRVTEGLAQLIEKEGQEAKEKGVVISFDSRYHSEDFAKLSAQILGYHGIKVYLFD GLRPTPELSFAIRHLGTFAGIMVTASHNAKQYNGYKIYGADGGQMPPEHAAVVEKAALEV ENQLAIPVSPIEELRAKNILQLVGEDVDEAYLEALDTINVNHDLIKETADKLKIVYTPVH GTGKVIYDRAFRQGGFKNFTVVPSQAIIDPEFPTTIKPNPEYRQVFDEGVKVADKVGADI IVATDPDADRLGAAVRTPNGDFQVLTGNQIATLISNYLLTNLKNSGKLDSSYEIITSVVS SSLPFKIAKSFGIQTKYVLTGFKYIGEEIDRLHKTGDGQFLMGFEESYGFLFKTFNRDKD AMQGALMFFEVAAYYASRNMSVFDGLQEIWNKYGASCEITKAIEMPGLDGQKRMAKVMEN LRKEQLKEINGHKVVKIEDFELAKEVTEAGERELVGFPKSNVLKYFLDDETWVALRPSGT EPVIKAYVGTNAETYAKAEEKCKAYHDAIAKFTK >gi|297148814|gb|ACGQ02000002.1| GENE 587 660043 - 660969 573 308 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 5 306 2 306 306 225 40 4e-57 MTKQYDIIIIGAGPGGLTAALYAARANLSVLILDRGIYGGQMNNTGAIDNYPGFLEIQGP ELSEKMYQSAMKFGPEFKYGDVTSVDFSKKIKLVKTSDAEYEAKAVIIATGAEHKHLGVP GEEEYSGRGVSYCAVCDAAFFKDEDVVVVGGGDSAIEEGLYLANIAKSVTVIHRRDSLRA QPVLQKRAFANSKMNFIWNAQTEEIIGNDQKVTAIKYLDKETGEHKEINASGIFIYVGVE PQTSLFKELGITDKQGWIITNEKMQTSLDGVFALGDVRAKDLRQIANAVGDGSIAGQEAY NYLQSLND >gi|297148814|gb|ACGQ02000002.1| GENE 588 661039 - 662061 1262 340 aa, chain - ## HITS:1 COG:SPy0226 KEGG:ns NR:ns ## COG: SPy0226 COG0240 # Protein_GI_number: 15674414 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 2 340 4 337 338 344 54.0 2e-94 MRKIAVLGSGSWGSVLASMLADNDVNNQVVLYGNRQSICDEINEKHSNSHYMKDWSLNKS VLATTDLTQAVKDSELVLFVVPTKAIREVAQNVKKAMLDTNTQPLIVAATKGIEPGSKKL ISQILTEEIYPDHEDKIVAISGPSHAENVAQKDITAITCASTNFENAEKVQEIFSNDYMR FYTSNDLIGVEIGGAVKNVIAIAAGMLVGKKYGDNAKAALMTRGLAEIMRLGVSFGAQPW TFSGLSGIGDLIVTCTSVNSRNWRAGKALGEGQKLEAVLENMGQVVEGAVTAKAVHEICQ KDGIDMPISEAIYKVLYEGADIDEEIRAMMCREKTSEVRW >gi|297148814|gb|ACGQ02000002.1| GENE 589 662064 - 662828 747 254 aa, chain - ## HITS:1 COG:SPy0585 KEGG:ns NR:ns ## COG: SPy0585 COG0682 # Protein_GI_number: 15674672 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Streptococcus pyogenes M1 GAS # 3 242 23 257 259 236 52.0 4e-62 MATGVLIATTMAIIEGKKRQIMSDDFIDFLLWAVPIGFIGARTYYVIFEWGYFSQHPDQI IAIWNGGIAIYGGLLAGLVVLLIFCRNRMLPPLLMLDIITPGVLAAQILGRWGNFMNQEA HGAQTSLTFLQSLHLPEFIIKQMYINGHYYQPTFLYESFFNFIGLVLILMFRHKKGLFKR GEVFASYIIWYSTVRFFVEGMRTDSLYIFNVIRVSQALSLVLFIAAIIFVIYRRKQDNVA WYLDGSGLKFPYER >gi|297148814|gb|ACGQ02000002.1| GENE 590 662917 - 663858 1170 313 aa, chain - ## HITS:1 COG:BS_yvoB KEGG:ns NR:ns ## COG: BS_yvoB COG1493 # Protein_GI_number: 16080553 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Bacillus subtilis # 4 313 3 310 310 311 49.0 1e-84 MADKVELTELFEDNNVLHVVQGKELIKNRAVTVSDIYRPGLELTGYFDFYPSKRIQLLGR TEISYAAMLDHETRLQVFNKMATPDTPCFLISRSLPVPKELTEAAAKNGIPILTTPESTT YIMSVLTQYLREHLAQRTSIHGVLVEINGIGVLITGASGVGKSETALALIQRGHRLIADD RVDVYQRDHDTVVGEAPKILNHLMEIRGIGIIDIKDMFGVGAVKDHTEIKLVIKLENWDP KANYDRLGFDQDTREICNIEVPQVTIPVKVGRNLEIIIEIAALNFRAKQMGFDASVTFQQ QLAKLIAENEKNK >gi|297148814|gb|ACGQ02000002.1| GENE 591 663870 - 664175 382 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238854883|ref|ZP_04645213.1| ## NR: gi|238854883|ref|ZP_04645213.1| hypothetical protein LACJE0001_0851 [Lactobacillus jensenii 269-3] # 1 101 1 101 101 154 93.0 2e-36 MGFIEFLVVVLILAIVVCVLFALLKLFILILPFILIIAGLIWLYIYFLKRKIRREISKEM DSDYKMSWEDFVSYGKNTNKDTEEHHRKPARDVTTEDVNDK >gi|297148814|gb|ACGQ02000002.1| GENE 592 664188 - 665186 1305 332 aa, chain - ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 1 326 1 326 327 384 58.0 1e-106 MADPDFWNNQESAQKLISETNKLKEKRDHFNDLAQAFSDEETALELLKEEPDDDLQVEVE TDLEKLKDSFHQYELNLLLSGKYDANNALMEIHPGAGGTEAMDWAQMLMRMYQRFSEAHG FTFEIDDYEPGDEAGVKSVSILIKGTNAYGLLKGEMGVHRLVRISPFDAAKRRHTSFASV EVIPEIDDSIEVDINPADLRIDVFRSSGAGGQHINKTSSAVRITHLPTGIVTTSQAQRSQ FQNKETAMNALRAKLFQLEEEKKRKEKEKLKGVQQDIAWGSQIRSYVFHPYSMVKDHRTN FETSDVNGVMDGKLDNLIYSFLQWRLSQENPE >gi|297148814|gb|ACGQ02000002.1| GENE 593 665361 - 667763 3057 800 aa, chain - ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 796 1 783 839 1013 66.0 0 MVNILKKLYDSDKRELKKFEKLADKVEGYADEMSKLSDDQLQAKTPEFKKRLENGESLDD ILPEAFAVCREGAKRVLGLYPYRVQIIGGISLHFGNISEMMTGEGKTLTATMPVYLNALT GKGVHVVTVNEYLSGRDEEEMGQLYRWLGLTVGLNLNEKSPDEKRAAYNCDVTYSTNAEL GFDYLRDNMVVYKEQMVQRPLNYAIIDEVDSILIDEARTPLIISGEAQQATGEYIRADRF VKTLTEDKSDDDVDDDKDYGDYKIDWPTKTISLTRQGIAKACKHFGLKNLYDVENQVLVH HIDQALRANYIMLKDIDYVVQDGEVLIVDSFTGRVMQGRRYSDGLHQAIEAKEGVKIQEE SKTQATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMQVITIPTNRPIQRKDMPDILY PTLDAKFKAVVEEIKKRHAKGQPVLVGTVAIENSERLSKMLDAENIPHAVLNAKNHAKEA EIIMKAGQRGAVTIATNMAGRGTDIKLGPGVRELGGLAVIGTERHESRRIDNQLRGRSGR QGDPGYSRFYLSLEDDLMKRFGGDRVKVFLDRISDNDDDKVIESRMITRQVESAQKRVEG NNYDTRKQTLQYDDVMRTQREIIYGERMQVIEEDKSLKNVLMPMIKRTISHQVDMFTQGD KKDWRIDSLRDFIVSSLTNEEVADKIDLKNIKSADELKEKLYNLAEENYKDKEETLSDPS QMLEFEKVVILRVVDDRWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQDAGYRMFEEMVAN IEFDATRLFMKAQIRQNIAR >gi|297148814|gb|ACGQ02000002.1| GENE 594 667902 - 668465 791 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116629960|ref|YP_815132.1| ribosome-associated protein Y [Lactobacillus gasseri ATCC 33323] # 1 187 10 196 196 309 80 2e-82 MKGESFMLKYNVRGENIEVTEALRSYVEKRLEKLEKYFELTSDVIAHVNLKVYKNHDAKV EVTIPLPYLVLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGREKGVKDFFIETPA EEEKPTSEFDIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAETNGTSIVYRRNDGRY GLIETNE >gi|297148814|gb|ACGQ02000002.1| GENE 595 668527 - 669204 334 225 aa, chain - ## HITS:1 COG:L0319 KEGG:ns NR:ns ## COG: L0319 COG1040 # Protein_GI_number: 15673071 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Lactococcus lactis # 1 225 2 216 216 100 33.0 2e-21 MRCYLCGNKFLPALNFYNLFNPLSESVDILCLDCRNSFSYLEKGCKYCQKSGENEICQDC QIWQKKYQALLKNQAIYAYDVQFYNAMRLYKRYGDYQVGKALAALIRTRVPLGFDYYIPI PTSESHIKKRGFDTIYEIFRDLVPLCPILKKYDLKISQGELNRQERLATPQSFYLEKKTK QQLNPNGKVLLLDDIYTTGRTLYHARDAIWQLYPDIHVESFTISR >gi|297148814|gb|ACGQ02000002.1| GENE 596 669201 - 670481 757 426 aa, chain - ## HITS:1 COG:SP2208 KEGG:ns NR:ns ## COG: SP2208 COG4098 # Protein_GI_number: 15902015 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Streptococcus pneumoniae TIGR4 # 36 426 40 428 432 280 42.0 4e-75 MENHTSLAGRQWIINQDDSSIFPNCEKISGIINNICQRCGSYCNTKIAVKKLYCRACIGL GRVSENDYLIRDLSNKSYSKQNDLLTWSGNLTARQAKVSQEICYAFKKRQDHLVHAVTGA GKTEMLFDCLKLCLEAGLRACIATPRIDVVNELYPRISSAFSKIKIGKYHGREYKDYEAE QLIICTTHQLLKFYHAFDLLIIDEVDSFPYAPSPMLHFGANNAVKTDGMKLYLTATPPDD LLEKIKHKKITVSLLNRRFHGGLLPVPKEKLFLKPFLKKKQLNKHLLKQIILVIKAGHPL LLFVPRINEIPVYLEALKACHQLKEMVIKGVHAADEARIDKVQEFRDKKIDILITTTILE RGVTFKHVWVIIVAADDAIYTRASLIQIAGRVGRSSDDQDGLVLFCYHKYTLPIRQAISE IKRMNR >gi|297148814|gb|ACGQ02000002.1| GENE 597 670529 - 671191 666 220 aa, chain + ## HITS:1 COG:lin2660 KEGG:ns NR:ns ## COG: lin2660 COG1739 # Protein_GI_number: 16801721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 209 3 207 211 172 45.0 5e-43 MSEKENFLTIKEAGQNELIIKKSRFIASFARTDTKEKAEAFVKEISKKYHDATHNTYAYT IGLNDDQVKASDNGEPQGTAGVVELRALQLMKLKNVTVVVTRYFGGIKLGAGGLIRAYSN SVTEAAKAIGVVKRVLQKELTFSIAYNRLDEINHYLEENNVFVSNREYGTDVTFTLFVED KDIEPLETDLTDLLKGKVDLKEIGQRYNEILLKEVNYHEQ >gi|297148814|gb|ACGQ02000002.1| GENE 598 671229 - 672398 1212 389 aa, chain - ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 2 360 14 395 443 332 47.0 8e-91 MFLIIVKLFFLVIIQTAVTPFIRRLAFVLGAVDNPNARRVNKKPMPTIGGLGIFVTFNIG IFILLREQFPTHEAFSILLASSVMVLTGLIDDILELKPKQKLAGQIIAAMIIYFLAGIRM KEIILPFSKQVITLGWWSLPITIFWILALTNAVNLIDGLDGLATGVSLISLSTMGVVGYF FLHTKELYIPIACFILAAALLGFLPYNFHPAKIFLGDTGALYIGFMISILSLKGLKNVTF ISLIVPIIILGVPITDTVYAMIRRKLNHKPISQADKHHLHHQLMRMGLSHRQAVLCIYGI SLVFSFVSLLFLLSPSWGIWPLILGLLIALEFFVESVGLLGDKYHPLLNLIQRMINSTRR SDPTVEVWHLGGEKPNQLKRKTSRDNKDN >gi|297148814|gb|ACGQ02000002.1| GENE 599 672504 - 674132 2183 542 aa, chain - ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 6 542 5 520 520 459 54.0 1e-129 MKTDLIPVLIAIVSLLIGYGIGYLIRKLHWEKQAENARNDAQHLLENAHTKLDAIKAEVE VAKQTAKTVRQEAENDKKAQILEAKEEIRAYREQTENDLSKQRIELSHRDARLQQKEDAI QEKEKDLSKKDAQLTQTKTQLEQREADLTQKQTEADELLSQRKEKLYEVAELSKDEAKKI ILAELSNQLDSERAELIRNSNEQAQAKADRFARQILVDAIQSSAADTVAETTVSVVELPN EEMKGRIIGREGRNIRSFEALTGVDLIIDDTPKVVTLSGFDPIRREIAKRAMERLIKDGR IHPARIEEMVDKARKEVNDDIYEAGEGALIELGIHKMHPELVKVLGRLKYRTSYGQNVLA HSIEVGKLTGTMAAELGLDERLAVRAGLLHDIGKAIDHDIEGSHVEIGVELARKYHESDI VVNAIAAHHGDVPKLSFIAELVVAADTISSARPGARSESLENYIRRLTQLETIASGYQGV SQAFAIQAGREIRVMVEPDRISDDRTTILARDIRNQIEKEMEYPGNIKVTVIREKRAVAI AK >gi|297148814|gb|ACGQ02000002.1| GENE 600 674259 - 675341 1104 360 aa, chain - ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 4 335 2 333 348 481 75.0 1e-135 MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKVDTQISTVPTGSLALDAAIGVGGYPRGR IVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPN TGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSG NINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSSDVVGN RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAVDKDIVDKAGSWYSYKEDRIGQ GRENAKQYLEDHPDIYNEIMTQVREAYGIDAKSLEEKEDPAKIKEKIEQDEKSGEKASKK >gi|297148814|gb|ACGQ02000002.1| GENE 601 675517 - 676080 278 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 182 484 668 904 111 34 6e-23 MNLPNRLTVFRIILIPVFMLVLILNFPTGSFNFANVNIPFSQVLAAVIFAGASYTDYLDG HIARARGLVTNFGKFADPLADKMLVMTAFVFLVSMGKAPAWIVAIIVCRELAVTGLRLIL VENDGEVLAAKMPGKIKTATQMLSIIFLLLGDIFFIGTILLYICLIFTIYSGWDYFYQSR DVFAGEL >gi|297148814|gb|ACGQ02000002.1| GENE 602 676088 - 677146 1293 352 aa, chain - ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 277 1 308 311 90 27.0 6e-18 MANIGEKLRSAREAMGLSIADVEKTTKIQSRYLTAIENSDFDKLPGDFYVRAFIRQYAQV VGLDGKELLAEYHQDVPETNSDEYVENSIDNKTEEVKKTTNSKKGMLKNQMPRIILGAGV VIVIIYVLITSLFRGSSQQASDAGDSVTVSSQSDSSSSSEKASSSTEKSHVKITRLGYGS YQVTGLKSNRNLVIHAGTNNLSASVTVDGETKWSGSISSDSKHTVKIPESAKSVSIYLSN DTGTKVTVGGKKIPYTPAGTSLNLRLTIGKVSSSSNSGTTQSSYTNTYSQSSSIATSSSS VYTQSSQASSSQTNTNQTNTNQTSQNTTNQNTGNTGTTGNTGAGEGQNNGGQ >gi|297148814|gb|ACGQ02000002.1| GENE 603 677199 - 677927 664 242 aa, chain - ## HITS:1 COG:lin1431 KEGG:ns NR:ns ## COG: lin1431 COG1028 # Protein_GI_number: 16800499 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Listeria innocua # 1 242 5 243 243 144 34.0 1e-34 MKRAIIFGATGGIGQVIANELAADGWSLYLHYSNQEQVANKLANQLMSQFPKQDFIAIKL DFLANNFELQQFCKGLLPVNVVIFAQGVTNYGFFGEQDLDNLEQEIQINLVTPLKLTRLL EPCLLKYKHSRIIYLGSVYGGQASALESAYSASKAALTRFSQAYAREVAASGLTVNVLAP GAVDTPMNAIFSDDVLDEVKSEIPAGRLASGKDISFWVKNILQPESDYLTGQTIYITGGW LI >gi|297148814|gb|ACGQ02000002.1| GENE 604 677938 - 679173 1066 411 aa, chain - ## HITS:1 COG:BS_ymfH KEGG:ns NR:ns ## COG: BS_ymfH COG0612 # Protein_GI_number: 16078749 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus subtilis # 6 402 1 405 415 158 29.0 2e-38 MKKLDIEKRNFSSGLTAQVVLRKGFKQKFFGIIVDFGSSDKQIPGSAHYLEHLLFSKKSG DITERFDEIGASTNAFTSYNATMFYASSIDNVSKTVDLLFELVGDPNFSKKSIDKERPII AQELAMYRDEPTWPISDSIMKQLFGESNLGLDIGGTSQTIKQINSRNLARIYRENYTANN MHFIAVGDFAPSAITRLFSQVKKLDKQYLQSGPKRDHTFKSEAGKLGITEFKNKTEVPYF CLGIKLPDFKKVLVNNDLGQILFEIMLESMLGEKSAWYQEKMLHGELTSPLQFDVNYTRQ GNFVTILGINNGDSLLSDLKTTLFASEKYTKQMNELRELFEMLKKVSLATLLAAFNNLSD LGFELAEEAIHDENIFDTLKLLQRMSFEEYWQICQDLLAESKTCSVFSTIE >gi|297148814|gb|ACGQ02000002.1| GENE 605 679170 - 680381 1221 403 aa, chain - ## HITS:1 COG:SA1121 KEGG:ns NR:ns ## COG: SA1121 COG0612 # Protein_GI_number: 15926861 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Staphylococcus aureus N315 # 7 402 13 415 421 68 19.0 3e-11 MDNNFFITENKNLTKANIGFFLKMPLTGHNLAMASLLAKMQVNSSQYFNTINKQTRALTD LYNMSFDVTPQLYGRELLLMYRLSYIEPLEVMDPEYSYEKIIETFSRIVRYPNLDSKVIK LAQNQLFNEYQELMASPTSYAWEHFFKKWYHDQPDFAHGIMGPINEILEADKEGLDAYSE ALTTCPAAMIGNAKNSKYIIKLLKDAFSDYDFEAKFTSSNLVIEMLPDPFTDEEKRNFEQ AQMLLGFGYNGQLNKKERLAGKFLARYLAGDDSSILFRKIREQLGAAYAVDADNYVNNSL LLISAGLSHDKLEQASKIAQEEIDNIKAGDIDQAIFKKIKKAIYNEHQYGLDRAGYRIML KLRALLMPEYAFDDLGKSIRQMQIKDLIKLANKLTLNESFYIK >gi|297148814|gb|ACGQ02000002.1| GENE 606 680371 - 682758 2054 795 aa, chain - ## HITS:1 COG:BS_spoIIIE KEGG:ns NR:ns ## COG: BS_spoIIIE COG1674 # Protein_GI_number: 16078743 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 16 785 15 777 787 592 43.0 1e-168 MPRKRKKATKAKTVAQKELRWAIFGIFLVIYALLTFAKLGLIGKEFANILRFFIGDSYPI LAFLFLMFGFVMLIYSKPPLIGFKRSSGLFLAYSGLVLELAANFFSHLDVFNGFINVFTK TILAEFSRGNLTESVGGGLVGSFYYSIFYPLLGNLGAVILGLLLLISGLLMFFDVKFVQI LHLFQSSSQKFIETNKDAGIKLKDKYVEARDNYLQNRDNRKNLQDPLANNDIFPDTGDMK TQSQTDLDVMPDLSKKTTTEKKTHFEPEIEIPSPSNSEEKELPKSHAFSDEDQKMKMELG NVDHGEIKPTHINSNYQKPPLDLLAPIKKVDQSGDKNLIRHNTQVLESTFKSFGVEVNVK KAILGPTVTRYEIQPAVGVKVSKIVNLADDLALALAAKDIRIEAPIPGKPLVGIEVPNKT TSAVSFKDVMLNQDNKSKANPLDVPLGKDVTGTTISANLTKMPHMLIAGSTGSGKSVAIN TMLTSILMKANPDDVKLVLIDPKMVELSVYSGVPHLLIPVVTDAKLAANALHKTVKEMER RYKLFAAGGVRNIGEYNQKVIENNQDKEKPVMKKLPFILVVVDELSDLMMVGGHDVEDAI VRLGQMARAAGIHMILATQRPSVDVITGLIKANVPSRISFAVSSGVDSRTILDQVGAEKL LGRGDMLYLPIGAAKPERVQGAYISVEEVEKVVAWVKDQQEADYNESMMPQKGEEQSDNS SNDEPEDEFYEEAVKLVTKQQSASVSMLQRRFRIGYNRAARIIDEMEAKGIVGPSEGSKP RQVLVQPKMENDNGQ >gi|297148814|gb|ACGQ02000002.1| GENE 607 682991 - 683173 277 60 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1345 NR:ns ## KEGG: LGAS_1345 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 2 60 1 59 144 68 54.0 7e-11 MVEFTKETPVLVRNFHYDLNEENHVKSEVNIALRKAAQQDDEGNLLEAEGGSYFEIAVPF >gi|297148814|gb|ACGQ02000002.1| GENE 608 683175 - 683732 758 185 aa, chain - ## HITS:1 COG:L161988 KEGG:ns NR:ns ## COG: L161988 COG0219 # Protein_GI_number: 15673131 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Lactococcus lactis # 3 169 2 169 169 194 57.0 5e-50 MTNHIVLFEPLMPANTGNIARTCAGTETVLDLIEPLGFQLDNKKMKRAGLDYWDKVEIHK HDDLKAFLDTLGPNDEMYLISKFSSKSYTDVDYTDNNKNYYFVFGKETTGLPETFMREYY DRNLRIPMSDHIRAYNLSNSAAMVIMEALRQQGFPKLEKSHHYENDKLKDDYNRHERYER NLGDE >gi|297148814|gb|ACGQ02000002.1| GENE 609 683725 - 684930 1173 401 aa, chain - ## HITS:1 COG:SPy1011 KEGG:ns NR:ns ## COG: SPy1011 COG0628 # Protein_GI_number: 15675014 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pyogenes M1 GAS # 11 383 12 383 393 246 35.0 8e-65 MDNKTNLKRPTLFKDWFLNNRFTIFLLNILLFFLIIFLFEQISFILNPAWVFFCAILPPL ILALVQYYMMNPIVDFFEQKLKVPRTVTILVLFLLVLGALIWVINSLLPIIQGQVDALIK NWPNIWDTSVKTTQNLLHDPHLKGFKSNINSVIDSVEKTLFKSWQKTGTAALTNISSAVS VITMIFMTLLTAPFVLFYMLKDGHQLNGYLTKFAPRRWQDSFSRLLHDINEAISAYIRGQ ITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIPYFGTFIALIPVLIIASITSWGML INVLIVFAIEQTIETRFISPIVVGNKMKMHPITTILLLIGASAVWGLWGVIFGIPIYAVV KIIVSRSFNYFKSVSRFYNDEDLFEINKQAQTKLDLGDKND >gi|297148814|gb|ACGQ02000002.1| GENE 610 685011 - 687755 2616 914 aa, chain - ## HITS:1 COG:MTH1516 KEGG:ns NR:ns ## COG: MTH1516 COG0474 # Protein_GI_number: 15679513 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanothermobacter thermautotrophicus # 14 911 12 907 910 697 41.0 0 MDEKKIRELYAQSEIDSVYQTLNSSSKGLSSEEAEKRLEKYGLNEIKRPPKQSQWQTFIK NFTTLMAILLWISGFIAIVSGTMELGIAIWLVNIINGTFSFWQERQAQKATDALNKMLES YVQVYRDGKKKQVEAKHIVPGDVFALQAGSKVPADARIISATSLQVDQSALNGESVPESK RTSFDPGEGKYAESNMVYSGTTAVSGTATAICFSTGMDTELGQIAHLTQKQEKVDSPLTR ELNRLTKQISIIAFTIGLFFFIASILFVKQPFGAAFIFSLGMIVAFIPEGLLPTVTLSLA QGVKRMARKHALVKELNSVETLGETTVICSDKTGTLTQNQMTIHYIRTLNDEFEVTGDGY VNNGQVELNGKQLWYDEHPDLKVITEIASLDNDTSIENKDGQNKILGTPTEASLVIMAQK AGYDIHKQMVKMPRLREFPFDSERKKMSTVNQISDTEAAVLVKGSYSDLIKDCAFVQVNG EVKPLTMEDKQKLDRLNADYARQGLRSMGLAYKKIKNDDAISSLTIETAEDQLVFAGLVT MSDPPRPEIYDAIKHCHDAKIRVVMVTGDSKLTAKTVAVKIGITSENARVIDGRELDEMS DSELREALKDEVIFARVAPEQKYKIVKTFQENGEVVAATGDGVNDAPALKRADIGIAMGL SGTDVAKDAANMILTDDNFASIVAAIEEGRTVYSNIRKFLTYILSSNVPEAIPSVLYLLS GGLIPLPLTVMQILTIDLGTDMLPALALGAEPSDPDVMKRAPISRNDHLLNKRVLVKAFL WYGLLEALVSVAAYFFVNKQAGLAFGHLATSGDIYIKATTMTLGAIVFSQIANVINCRTE KVSVFKKGLFINPHIWTGILFEIILFIILTVTPGVQGIFNTGILGVSDWMMLCLIPIPLI LIEEARKWLFRIKK >gi|297148814|gb|ACGQ02000002.1| GENE 611 687861 - 688883 1030 340 aa, chain + ## HITS:1 COG:L11851 KEGG:ns NR:ns ## COG: L11851 COG2706 # Protein_GI_number: 15674136 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Lactococcus lactis # 2 336 4 339 341 251 41.0 1e-66 MKVLIGGYTKKTSKGIYQADLTLKNGQASLENFKDYIEINGPTYFKKCGNYLFSIAKNGD EGGISYFHLNPVKLINSVFQTGSSPAYLGINEDKQLVYTANYHTAYLSVYHYDNQGVSLV DQIKHDNFNLGPRPEQSDGAHPHFFDETPSGKLVSCDLGNDSVDFYELKDGHLVHLARYL NEAGFGSRHIVFNKENNCFYVAGELSSKVNVVKYNERTWEFENIATYKTIPDDYTEHNGV AAIRMSNDGKFLYLSNRGHNSITVFKIKNDHTLELIQRISTFGEFPRDFNWDSSEKWVIV ANQNTDNATLYERNSEMGTLAVVQKDVAVPEGTCVIFSKE >gi|297148814|gb|ACGQ02000002.1| GENE 612 688894 - 689724 923 276 aa, chain + ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 3 274 1 279 284 262 52.0 4e-70 MLINIIKAIILGIIEGITEFLPISSTGHLYLANYVVKLQENQSFIDMFMVVIQLGAILSI IVIYFNKLNPFSLSKTKLQRENTWSLWLKVIVAVLPSVIIGLPLNDWLDEHMTNWQVISA TLIIYGILFILLENYYRNRNAKLTDLNKISFRMAFLIGCFQVLSLIPGTSRSGATILGAM LLGASRYVSAEFSFFLAIPTMFGASLLKIVKYVHAGHTFVGDQLAVLLVGMVVSFVVAYL AVKFLLKFIQTHDFKSFGWYRIALGIIVIIIGVFVK >gi|297148814|gb|ACGQ02000002.1| GENE 613 690020 - 694768 7073 1582 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0143 NR:ns ## KEGG: LGAS_0143 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 539 1428 1613 2537 2823 176 26.0 7e-42 MFNERQRFSLRKLSIGVVSVLLGVTFVSNAQVVKADEATNSVSASSSDVSSNSTTSSSSD ASVAASSSSDSVTTNESSQVTNQPQDLNSSNLASASTYTLGDGNRRYPSADKDPNNANNY VTLQDISERYVQTGGTLAPNEKRWRIVWNSNVNNSTKTDEQWFSIMMTKNVKIKGGANNV TIQVIGGPTDRQTWQQVQFDIDKGPTILHNSNELSDEYRDYFIHDKKFNGHYYNGADPEA LEMWTHINLPTFSYANYGRANLDRQTTMNHLFYDNNWFPASIKNRTSYEWDDALEFGGNW ITRYKHNDGTTQNGPLINLDLNSNDDKNVKYLGDIYTFHYQSANGYYLGGTKKVQMDFTT VVDSTVTDVPETRLIAGYKAGAAGSDFRRAQENNHLVDNQTYKLIVNETSQRSDKKIPAN AFKVAGPDNISKDYTHEELNQTNNTQEFNYYTDKIDTATQQNILNSLKVASTTQNGVTVS DPVIDTVNKTVTYNVVYTDTVAEKTTHIIFKDGDTPVKTVEVSGKPGDKVPVSEEDQKIP DGYELVPGEKVPTEVDFPSDGTTPEDKVVKLTHKTTTVNPDDPKTPEDTLPENPKVHYPD GVSEKDLNKTVTRRIYEVDPVTKEKVLVKTQEAKLTRTATVDEVTGKVTKYSDWTTGTWE SYTASTKEGYTPDQSTVPEVTVDGDTESTEVVINYVKNPTGKIIFKDGDKPVKTVEVSGK PGDKVPVSEKDQKIPDGYELVPGEKVPTEVDFPSDGTTPSESVVKIQKKTPDTPSTDQPT GKIIFKDGDKPVKEVTVPGEAGKTVEVPDTTIPEGYELVPGQEVPTTIDFPGDGSNPSDK VVELQPKTPTEQTTHIVFKDGDTPVKTVEVSGKPGDKVPVSEEDQKIPDGYELVPGEEVP TEVDFPSDGTTPSESVVKIQKKTPDTPSTDQPTGKIIFKDGDKPVKTVEVPGKPGESVEV PDTTIPEGYELVPGQEVPTTIDFPGDGSNPSDKVVEVQPKTPTEQTTHIVFKDGDTPVKT VEVSGKPGDKVPVSEEDQKIPDGYELVPGQEVPTEVDFPSDGTTPSETVVKIQKKTPDTP STDQPAGKIIFKDGDKPVKTVEVPGKPGESVEVPDTTIPEGYELVPGQEVPTTIDFPGDG SNPSDKVVEVQPKTPTEQTTHIVFKDGDTPVKTVEVSGKPGDKVPVSEEDQKIPDGYELV PGQEVPTEVDFPSDGTTPSETVVKIQKKTPDTPSTDQPAGKIIFKDGDKPVKTVEVPGKP GESVEVPDTTIPEGYELVPGQKVPTTIDFPGDGSNPSDKTVKLTHKIVVVTPDDPKSSND PLPDNPSKNYPDGVTETNLRKRIKRTINVINPNGDIDVTTQLVVFERTATVDQVNGQVSY SDWKQVGEDKSWPKFEAPDITGYTPSTESVSEVIPNVNTENVTVNITYKADNSGSDRDAN TPTDPQPQGQDITTNKGTTPSPSDGIKNKGDLPDGTKYSWKETPNTNNGDTTGTVVVTYP DGSKDEVKVTIHVTEPNKKTGMEDNKSTIVTSSSSANKVKNTANSKQSTLPQTGANTSAL AGLGIALMGLASMIFINKKKKD >gi|297148814|gb|ACGQ02000002.1| GENE 614 695135 - 706051 12410 3638 aa, chain - ## HITS:1 COG:no KEGG:LJ0621 NR:ns ## KEGG: LJ0621 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1987 2547 2152 2704 2789 240 36.0 7e-61 MFDAKQRFSLRKLSIGVVSVLLGFTFVSNAQVVQADTSSSTANSQNGGGVDRASDSQSSG SASTSANTSNSNEVTTPSYQNTSNKSNITDNSDSAQTYVNKTRQDSMGNFSTTNVDQAKG MDYMRQNSQVDPGKIFAGGPQNWGWASDMTKNYKITQEAQNNGTTKWTVTFLPDGKYYMN NIVNHADSGAYALMISKDNEVVKDANGNLFTVNETLRNNAASLGGSVVKTATAYIKGEMS QSYQDYDQAAINRWIATDPATATTYINSGKIPLTFATGYVTSSITTFTNTSSATQRSKVL NDRALYMDSYGIVPRDSTNYDNVHGFNSGIDSNGNGSSYWQKAFKMDENNANKNQNQNMW GNKNPVIDVNDFGYGILFRTQGSKFLNDNSGATWTVTFYTKPSGEKVSTYSGVIALGNEG TPQNADGGATRGQAAKTNSDIHLMQAASSGVSSGKIITSDSLDAATAQVNVVVKNATNNA TGNIPAVNYTLTKAPLTDVTGNTNSSTSSVTDSVVPNTGSVQKNYYISESFAYSNDTDEM QAKIDKALNPTSDNGSKYLSLNINNLADLEKAGFKATTSYDSTNKQYVITVANADKDNIK YPAVDPAALTVVNDKTNLSQDTASTAKITDLIKAANSNVTDVTYSDIDRAATLTYADGST NSVSYDDLVVQVPAKTMIYQDSGADTFTITDDEAGSISTNVNAANATAKLGIRVNQINGK YDGSVTVSRTSASGVYQTATLTPAQTIINIPNPVLVKDKTNITAEEKQKVVDNLKNANKT ISDGFTSASVALDGTASVTFADGSKPITVPGTKTVFESIHQSIIPPSGLVWVKDQTNLTS SELDQVKQLFKDANDGATEVSFGTNNTGVTVKYSDGQVLTLDDVRANQYTINYPKRVLVP IGETVSSVGGDVYKAAFQESIQKKASLDGIAYLLNISLDSSGNVTYTISTNNDSKRLVYS QGKLDAKYTTVFVKKLVKVADPNNLTDQDKQNIKDQLTKDNPNILFDWNNATINNGYNAT STLSFSEGSPTLDVVNSNLIYADAVAPKVKTAVGDPDNLTNDQKQSIIDKVIEANKDRDV TSATIDQNNGRVVVTYDGSSITETIPISDTIVYIPTRTVVSNKANNWTTPDYTLSDSEQA SVKSATEAANKGFTAQVNNDGSVSLTDDNGNTATLTTDQTILKLPKRTVVADKKHLTSDE KQAVLTAIKKLNPSVADTSAGNVIADDGTATLSFVDNGTKTKVAGDLLVYQNATLNKPTT LTPVVDKTNLTSTEISQIIQNVKNANMSGGTTYLTDVNVVKDDNGNNVVSATLPDGTTHQ LTMDDVAVTIPLRTVVANKGDQPDETGQLVPIYRLDDGEKQAMKDAFLKDNPNIASDHVQ AHASGDITVYDDNGKEVATIPADKTTFDISTRIGVKNQKELDSGEVQVVTDVLKQGNANV DTTKISVGTDGTADDMAKVSFTDGTRSITIPGEKLTAQIVNNMVYPLEITSKTLVTDPTK LTDNDKAQIENSLRKNNPQVQSYEYGTDESGNPTITAVYPDNSKTTIPLSVVVAKYPEKT LIKLSDRNNNPAADLTNAQKEVIASAVKVANPNAEVIVNSDGSVTMTETVTYNVPTPVAG GDMHDPNVQVTTKEVTKTITTTISAPDAVINVPNKVKVDNVSSLTPFEKSKVWDAIKAAN PNTKFNGIDITNIVEDNGDTPVTFQDGSPATKLTDLVAKKTVADTVVVNIPSERIIVNNR QQLSDEDQEAVKTAIANANPASDGKPTVTIDSDGNIKLTYSDGSSVDLPVKVNKITVQAP VRQIVQDKNENGTTTFPIDKEAIKKAFTIANPDLNSDNVVVDNIGGVNYTGSGTDDPSVY IPRDVTTIKVGPKVLVDNPTSLTDDEKDQVISTIKKDNFDSVTNEYGNFNPITHDSFQED GLHVTYPAGQGQNVVIPYSDLVEQAAKGQDIYVAKGDTVNPSDLIANKDALPEGTTPTLN GSVDTSTSGVKKATVTVTYSDGNSTQITGNVHVIEAGEPVKVGLNHNFTAEEAKSAINPN AELPEDAAYSWKTTPDTSTSGSDKEGVVTVTVGDKSVDVPVKVNVVSDADESVTPIPEKP VTVKHNAELPKAEDVITNKADMPNRTTYSWDPENTPKTDTVGEFPGKIIATFPDGSTKSV DVTVKVTPLDNETYSAKGKTVNVDKGTDPVAKDSIENTSDLPENTDYVWTKKPDTSTWGD KPGTVHVTYPDGSTQDVDVTIHVNSDADKYNPTTHPITVDHNEDLTGKASDTVDSNNYPI TKIDWQTVPSTTTPGGVPAKIVVTYEDGSTDTLDTTVNVRPAQSEQFDPASQEIPTRINQ VPKAEDGIQKQDKNGKDMPTDAEYSWAKEPDVSKSGESTGVVNVTYKDGSVDQVTVPVRV VSDADENNPKADSVSVKRNADLPKAEDVITNKADMPNGTTYSWDPENTPKTDTVGEFSGK IIATFPDGSTKSVDVSVTVITNDADNFNSNFDKVPVKGDADLTDSQKEEVKGNVTKKNPD KGITNIEVKGDGSTTVTFEDGTTKELTPDQTIKRYDVGEPLTNTGEADTDLNSFDKTTVK DADKLTDDEKGQVVSNIKKTNGDKDITNIDVKDNGRTIVTFGDGTQKELTPDQTIISSKL GEPLTNTGEADTDLNSFDKTTVKDADKLTDEEKGQVVSNIKKTNGDKDITNIDVKDNGRT IVTFGDGTQKELTPDQTIISSKLGEPLTNTGEADTDLNSFDKTTVKDADKLTDEEKGQVV SNIKKTNGDKDITNIDVKDNGRTIVTFGDGTQKELTPDQTIISSKLGEPLTNTGESEDLN RNIKKVPVEGDRDITDTEKAEVIKNIKDGNPDKDITDVTVKPDGTATVTMGDGTQSTFTP EETVNRYKLIDPLTNPGEDQGFNSNFDKVPVKGDGDLTDEQKQAVKENITKSNPDKGITN IEVKGNGSTTVTFEDGTTKDLTPDQTIKRYELGDPLFNEGKDKNFDGNFDKVPVKGDGDL TDEQKQAVKENITKSNPDKGITNIEVKGDGSTTVTFEDGTTKDLTPDQTIKRYELGDPLF NEGKDKNFDGNFDKVPVKGDGDLTDEQKQAVKENITKSNPDKGITNIEVKGDGSTTVTFE DGTTKELTPDQTIKRYELGDPLFNEGEDKNFDGNFDKIPVKGDGDLTDEQKQEVKTNITK SNPDKGITNIEVKGDGSTTVTFEDGTIKDLTPDQTIKRYELGDPLFNEGEDKNFDGNFDK VPVKGDGDLTDEQKQEVKTNITKSNPDKGITNIEVKGDGSTTVTFEDGTTKELTPDQTIK RYDVGEPLTNPGEDQGFNSNFDKIPVKGDGDLTDKQKQAVKENITKSNPDKGITNIEVKG DGSTTVTFEDGTTKDLTPDQTIKRYELGDPLFNEGKDKNFDGNFDKVPVKGDGDLTDEQK QEVKTNITKSNPDKGITNIEVKGDGSTIVTFEDGTTKELTPDQTIKRYELGDPLFNEGED KNFDGNFDKVPVKGDGDLTDEQKQAVKENITKSNPDKGITNIEVKGDGSTTVTFEDGTTK DLTPDQTIKRYELGDPLFTDETNNGSQTSSDKDTNKSTKNDKVHNLTSAKGTSGNSTITK SSAKTLPQTGENKVGLEMLGLSLLGLAGMLFISKKKKD >gi|297148814|gb|ACGQ02000002.1| GENE 615 706320 - 706751 371 143 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851496|ref|ZP_05556885.1| ## NR: gi|256851496|ref|ZP_05556885.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 143 1 143 143 209 100.0 6e-53 MVRKILQRYTMIISSLILIGGISYINSQLVSAATRSNSTLKNTVISRKNLESRNRDDNTA KSNNSNSSYNSTIPTSNTPQSNIEKILSPTITFPQTPTKIFFFATKLPQTGLQKSEVSLL GIIVLILTSIVGYHGFFKKNNRK >gi|297148814|gb|ACGQ02000002.1| GENE 616 706854 - 707747 287 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 40 286 41 280 285 115 34 5e-24 MKIFKFIVSEEDPKRLGPFLSKKKLSKQAIVNAKHNGGMLLVNHRRRFTNFTLKVGDEVL FVMGKEKVNNFLKASNKSVKIVLETDNYLVINKPAAVLSIPSRYEDKDAVVNRVMGYFAK KKSSEQAFLKPHIVTRLDRDTSGLVLVGKNAVAHSKFSELKKDVFVKEYHAIVHGNFNSE HQKGLITAPIGKIDDSVKRYVTPNGQKSVTQYEVLAQKDDASLVKLRLFTGRTHQIRVHM AHIGHPLFGDKLYGSVDNFTRQALNCSHLSFPDPFTDEKVTVEIDDPEDMAHLWQNL >gi|297148814|gb|ACGQ02000002.1| GENE 617 707748 - 708536 708 262 aa, chain - ## HITS:1 COG:SPy1126 KEGG:ns NR:ns ## COG: SPy1126 COG0061 # Protein_GI_number: 15675106 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Streptococcus pyogenes M1 GAS # 2 262 12 274 278 256 49.0 3e-68 MKVAIINNSHKKTIEVVEHLKKLLAEKQITIDEHQPDVVISVGGDGTLLSAFHKYEKIVD SVRFIGVHTGHLGFYTDWRNYDIDQMVDALCTTAPSTSSYPLLELTLVMDDGRQERFLAL NEASIKRISKTLVANIYIKGELFENFRGDGICVSTPTGSTAYSKALGGAVIHPRLKALQM TEIASINNRVFRTIGSPIVIAPDEWITILPNDGHNLILIIDGNRIPVDHVNRVIYRISKQ RIHFDKFGHHHFWSRVGDAFIG >gi|297148814|gb|ACGQ02000002.1| GENE 618 708536 - 709162 815 208 aa, chain - ## HITS:1 COG:lin0966 KEGG:ns NR:ns ## COG: lin0966 COG2357 # Protein_GI_number: 16800035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 204 1 204 222 237 59.0 9e-63 MTDWDTFLWPYNEAVQELKVKFRSLRQGFLTRGEHSPIEFVVGRVKTVDSIKEKMQRRII SPEVIETDMQDIAGIRIMCQFVDDIYKVVDLIHERSDMQVVEERDYIHAAKPSGYRSYHM VIKYTVFLPEGEKTLIAEIQIRTLAMNFWATVEHTLSYKYQGKYPEDVSKRLKSTAEAAY QLDEEMSAIRKEVQDAQKVFNQNKGKGQ >gi|297148814|gb|ACGQ02000002.1| GENE 619 709275 - 709895 588 206 aa, chain + ## HITS:1 COG:no KEGG:lhv_0692 NR:ns ## KEGG: lhv_0692 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 206 1 202 204 197 54.0 2e-49 MSKNREIESKTLLERKVFSAILKTFPSKKSFTQINYYFDNDKETLKNNKISLRIRLYPDK AEQTMKVPAKKLCQENYHEVIEINDSLSLKVAQEIVENSLNGGVTIFENNCGKYLFDNFS DICQDLKIFSYSKTTRHLLVGPNDCELTLDETSYPDGYRDFELEIENDNPDLIKQTLNTL IQQFNFHPNSKNTNQNKIARASLHRN >gi|297148814|gb|ACGQ02000002.1| GENE 620 709938 - 710537 511 199 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00656 NR:ns ## KEGG: LCRIS_00656 # Name: not_defined # Def: dithiol-disulfide isomerase # Organism: L.crispatus # Pathway: not_defined # 11 194 1 184 205 150 40.0 2e-35 MNKFVGGLETMFEVFMFVNPIGTCCYQTEQTIMKTMKEADAITRYHLIPLANMKTIQSDL IRKHKCPTNLETYNHASEETFAALKDYHAIKMAYGNKIARKYCLAVQHNINDLNKEYNTG LFKNLIQELGLSIPKIQSARMSTYLNESIAADERLAQKWHINDTPTTVIFNDEDENSGLI VEGHLLHDELLQIINGFDI >gi|297148814|gb|ACGQ02000002.1| GENE 621 710518 - 711114 519 198 aa, chain - ## HITS:1 COG:SPy1395 KEGG:ns NR:ns ## COG: SPy1395 COG4469 # Protein_GI_number: 15675318 # Func_class: R General function prediction only # Function: Competence protein # Organism: Streptococcus pyogenes M1 GAS # 32 195 28 192 320 79 34.0 5e-15 MYAALLNNKLVLARTEEARIQSNLIALNQEKYLCPRCKKKVILVLSEKRLPFFKHQMAQV GRQGEKEEHYRGKINLKTALIAAGFPAKEEVPLAKGELRADILVNSQLAFEIQCAPLSKG EFSHRHNLYKKVGIIDIWIVGKRHYLTNYLNQRQAIFLRFNRSWGYYYLEIDSKREYLTL KYQILQEPLTRKIRYQNH >gi|297148814|gb|ACGQ02000002.1| GENE 622 711174 - 711776 512 200 aa, chain - ## HITS:1 COG:no KEGG:lhv_0689 NR:ns ## KEGG: lhv_0689 # Name: not_defined # Def: adaptor protein # Organism: L.helveticus # Pathway: not_defined # 1 199 27 242 246 124 39.0 2e-27 MLDLLGNKSEIQDFFYSILREVDTDHSFAGDNQPVTFQVMPNEGGLDLLITKYNKADADS IQKQLGNLLGMGNDNRESRLGPIQKLNKELGISSDSNKDIPAKEVSNQANFLFSDIDQVV QLADSLPTDKVAASLYTFKEHYLLQMNNLGNAEDVDSGNIWSVCLEFGTLADDKTLNLFK NNGKCLIKQDALADLLTYFK >gi|297148814|gb|ACGQ02000002.1| GENE 623 711935 - 712333 426 132 aa, chain - ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 131 1 131 131 175 67.0 2e-44 MINLYVSSSCTSCRKARAWLNKHDIPFKERNIFSEPLTKEEIVNILRLTENGTEEIISTR SRAFQELHVNLDDLSIDQLLDLVEKNPSLLRRPIIMDDRRLQVGYNDDEIRRFLPRKVRR LELAKAQKLADL >gi|297148814|gb|ACGQ02000002.1| GENE 624 712546 - 714282 2421 578 aa, chain - ## HITS:1 COG:SP1176 KEGG:ns NR:ns ## COG: SP1176 COG1080 # Protein_GI_number: 15901041 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Streptococcus pneumoniae TIGR4 # 1 563 1 565 577 720 64.0 0 MTKTLKGIAASDGIAVAPAYRLVEPDLSFTKASVDDVDQEVARFEKAVETSIHDVESVRD IAKENLGEEEAQVFEAHLLILNDPEYIGAIKQEIKDSKVNSEFALDETSQKFITIFESMT DNEYMKERAADIRDVSKRIMAHLLGKNLPNPAAIDHEVVVVAHDLTPSDTAQLNKDYVKG FVTDIGGRTAHSAIMARSLELPAVVGTDSITSDIKDGQLLVVDGLDGLAVIEPSDEEVAD YKKKGEAFLKQKAEWKKLKDAPSVTKDGKHFTIAANIGTPDDMAGVLENGAEAVGLYRTE FLYMNSSELPSEDDQFEAYKKVIEGMNGKQVVIRTMDIGGDKHLPYLPLPEEMNPFLGYR AMRISLKEDQIFRTQLRALLRASAYGRLGIMFPMIGTLAELHKAKAIFNEEKEKLVKDGV KIGDDIQVGMMIEVPAAAVLADQFAKEVDFFSIGTNDLIQYTFAADRGNEHVSYLYQPYN PSLLRLIKHTIDAAHDNGIWCGMCGEAAGDSVMFPLLLAMGLDEYSMSATSILRIRSQMK KLDTKDLEGLVDKAINESLTNEDNQKLVEDLMSKLNLD >gi|297148814|gb|ACGQ02000002.1| GENE 625 714282 - 714548 477 88 aa, chain - ## HITS:1 COG:SA0934 KEGG:ns NR:ns ## COG: SA0934 COG1925 # Protein_GI_number: 15926669 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Staphylococcus aureus N315 # 1 88 1 88 88 112 71.0 1e-25 MEKRDFHIIAETGIHARPATLLVQAASKFSSDINLEFNGKSVNLKSIMGVMSLGVGKDAE VTISAEGDDAAEAIEAISDTMKKEGLAE >gi|297148814|gb|ACGQ02000002.1| GENE 626 714654 - 714836 286 60 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00650 NR:ns ## KEGG: LCRIS_00650 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 60 1 60 60 77 65.0 1e-13 MDYESILNQLVDGELSEYKIEAKDAFAFQQALRAFGKRTYIKGRALRGGAIIYTATNIDK >gi|297148814|gb|ACGQ02000002.1| GENE 627 714996 - 717179 1605 727 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 56 726 132 813 815 622 48 1e-177 MLCQNCHERPASIHLYTKVNGESRSLDLCQKCYQEFRASQGGNLGNENINNDNYDNNENP NMGDLFGNFNNLFGSMNGATASQMQNPQTPGRGGNGNSILDQYGTDLTALAKQGKIDPVI GRDKEIARVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQEIVDGSVPAKLQNKRIVSLN IVSMVQGTGVRGQFEQRMQRLIKELQSNPDLILFIDEIHQIVGAGNAEGGMDAGNIIKPA LARGDFQLVGATTIKEYREIEKDSALARRFQPVEVKEPSVDETIRILHGIQKRYEDYHHV HYTDAAIESAVKLSSRYIQDRYLPDKAIDLLDEAGSRMNLTIPFVDKEKIKERIDAAQQL KQDALKNEDYEKAAYYRDQIEKYDKMKDQKVDPDKSPVITDKIMNKIVEEKTGIPVGDIQ KQEENQLQNLASDLKAKVIGQDKAVEQVARAIRRNRIGFNKSGRPIGSFLFVGPTGVGKT ELAKQVALKMFGSTDAMIRFDMSEYMEQYSVSKLIGSAPGYVGYEEAGQLTERVRHNPYS LILLDEIEKAHPDVLNLFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGQGIKNASVGFT AEANPSKESTRSSMSQFFKPEFLNRLDDVIEFNPLSKEDLLKIVDLMIAKTNSMISDQGL HIDVTDAAKEKLVKEGYEPSLGARPLRRTIQAEIEDKVADFKLDHANVKNFLADLVNDEI TISAKES >gi|297148814|gb|ACGQ02000002.1| GENE 628 717277 - 717555 415 92 aa, chain + ## HITS:1 COG:no KEGG:LJ0814 NR:ns ## KEGG: LJ0814 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 92 32 123 123 110 65.0 1e-23 MHLIDVTNTYSDLVQNQLNSTNAQYIKVYSLGNSSVVYTETDADIEIVIENHDRKIKDEE VEFLIRRLIRDDRSYDITIDKTKKVIAITCRK >gi|297148814|gb|ACGQ02000002.1| GENE 629 717625 - 718635 1118 336 aa, chain - ## HITS:1 COG:lin2619 KEGG:ns NR:ns ## COG: lin2619 COG2017 # Protein_GI_number: 16801681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 6 307 9 319 353 181 33.0 2e-45 MDIKVEKYGQYCEQNLYEFTLVNDQGLVVKLLNYGATLEQVLMPGQAGLQNLVLSLPGRL DYSKERNFLGGTVGRVVGRIRGHIWHCGSKDVVLAMNEGKNHIHGGNDGLDQQVYNFRIN KSPEKIEVIFTFLDSAGHNSYPGNLKLEVKYILNNDNQLKYQIRAKSDETTLFNPTNHTY FALDQPNNIFDTTLTIAADYFKPLDKEHLPYEGWLSVDNTVFDFRKGQKLANVINSTDKQ IISEGGLNHPFLLTNGDKFAAKLETKNHRVTMTTTAPSMVVYTANHFDGTGVAKNIDKFA GIALECQYPPVSGNDLSAITLLAGEDFYLENIWNFE >gi|297148814|gb|ACGQ02000002.1| GENE 630 718666 - 720066 1032 466 aa, chain - ## HITS:1 COG:SP1852 KEGG:ns NR:ns ## COG: SP1852 COG4468 # Protein_GI_number: 15901680 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 466 20 488 493 536 55.0 1e-152 MDKVYLTNRLLNLIGDNALSLSAAKDFLANLDLLVKEAVANKKIADTLAAKQILEAQIMD LATPSPSQANHIFWDKYQAGAKEATNWFFNLSKANNYIQTRAIAKNIVFPAKTEYGDLEI TINMSKPEKDPKDIAAAAKLKKAGYPACALCMETEGYAGRNNFAARANHRIIRFLLGGKT WGFQYSPYAYFNEHAIFLDENHEPMVINQTTFSNLLAIVDMFPEYFVGSNADLPIVGGSM LSHEHYQGGRHIFPMAKAPIEIKLQLADYPEVKAGIVKWPMSVIRLISHDKDELINAAEH IRKIWDNYTDETVDVRAVTNGIRHHTITPIAQKIAGKYQLDLVLRDNQTSNKYPDGIFHP HADVQHIKKENIGLIEVMGRAILPARLKTEFNEVKKYLLNQPNQINPIHKEWAEQLRQKY SWSESNSDKQLQLAVGEVFAQVLADAGVFKRDEVGIAAFKRFCHQL >gi|297148814|gb|ACGQ02000002.1| GENE 631 720123 - 721118 1252 331 aa, chain - ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 327 2 328 328 432 61.0 1e-121 MTIAVLGGAGYIGSHTVKRLLATGEDVIVLDNLITGHRRAVDKRARFYQGDIRDFQFLSS VFSQEKVDGIVHFAAFSVVPESMKNPLKYFDNNTCGMVTLLEAMNQFGIKRIVFSSTAAT YGEPKQIPIKETDPQLPTNAYGESKLAMEKIMHWADLADGLKFVALRYFNVAGAMPDGSI GEDHNPETHLIPIILQVAAGKRPSLQIYGNDYPTKDGTNIRDYVHVLDLADAHVLALKYL EAGNSSTAFNLGSATGFSNMEILQAARKVTGEPIPASIGPRRLGDPSTLIASSDKAKELL GWKPQFDNIEKIIETAWKWHENNPEGFGDRN >gi|297148814|gb|ACGQ02000002.1| GENE 632 721141 - 722307 1417 388 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 1 387 5 391 392 417 56.0 1e-116 MKSTNVKKGFIEQFGKAAEHTFFAPGRINLIGEHTDYNGGHVFPCAITLGTYAAVGSNDQ DAFLLYSDNFPDVGVVKITFADLAKEKQGLWTDYFQGMAQVMQAAGLDYSHGLNIYISGN LPDGAGLSSSASLEMLVATILNNLFGGKFTPLELVKFGVRVENDYIGVKSGIMDQFAIEM GKENQAMLLDTNTMQYDYLPVEMGDNVIVIMNTNKRRELVDSKYNERRSECEQALARLQK ELNISSLGDLTEDEFDENTYLIYDPILIKRARHAVFENMRTLNAAKALQAGNLKGFGKLV SASGVSLAYDYEVTGPELDTLVTTALKQAGVLGARMTGAGFGGCAIAIVNLDNVEDFINE VGQVYRQKIGYDAHFYVANIADGAKQLS >gi|297148814|gb|ACGQ02000002.1| GENE 633 722461 - 723018 440 185 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851514|ref|ZP_05556903.1| ## NR: gi|256851514|ref|ZP_05556903.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 185 1 185 185 265 100.0 7e-70 MNEERVTTLKTKLPNLIYLVLAFFVQLKLATYLRQYTPNNSLQHLLFALYIFALVVTIIL TASWASNLNKKQARIIVALEFMLIIASLILPSYKPSSVFLELLLFYGLIPLLGQGIAVAN LNKDMNKTKIVRPVLLVVGLVVSVAMIYIYSLPLSYAISVKLAYIWGAIILLLYGMCWRM NTKNK >gi|297148814|gb|ACGQ02000002.1| GENE 634 723136 - 724707 2260 523 aa, chain - ## HITS:1 COG:L0369 KEGG:ns NR:ns ## COG: L0369 COG4108 # Protein_GI_number: 15672331 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Lactococcus lactis # 5 523 3 521 523 729 68.0 0 MAEKLLDQVNKRRTFAIISHPDAGKTTITEQMLLFGGVIRSAGTVKARKSGHFATSDWME IEKKRGISVTSSVMQFEYEGKRINILDTPGHQDFSEDTYRTLMAVDAAVMVIDSAKGIEP QTKKLFKVVRKRGIPIFTFMNKLDRDGRDGLDLVAELEDILGIEGVAMNWPIGSGKSLKG LYDIQNNRVELYRKDGDDRFIDLDSEGKLPESEELSHDSLYLSALDDIELIKEAGNTFDE ERVLAGEQTPVFFGSALTNFGVETFLKSFVDLAPAPSSHKVNDDEELKPDDEEFSGFIFK IQANMNPNHRDRIAFVRIGSGEFEKGLDVTLARTGKAVRLNNATEFMSSERVQVSKAVAG DIVGLYDTGNFQIGDSIYAGKRKIVYEPLPEFTPELFMRVTAKNVMKQKSFHKGMNQLVQ EGAVQLYRNFNTDEYILGAVGQLQFEVFKFRMQNEYNSEVEMTSLGKRVARWIDPEQLDP KMSSSRNLLVKDRYDKPLFLFENEFAMRWFHDKYPDVKLTEKL >gi|297148814|gb|ACGQ02000002.1| GENE 635 724707 - 725570 995 287 aa, chain - ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 6 273 163 432 449 228 45.0 7e-60 MSSDPAASNFFENLRKKFVGEEESEPLEQLEQEIEKLHEDKSINDTVYSMFTGILNFQGK MAREVMVPRTDAFMVDINDNFQDNLDDILHEPYSRIPVYDQDKDIIVGVIHIRTVLRKAR KLGFDKLDYQDVMYKPLFAPETIDLGELLVEMQKRQQQIAILTDEYGGVVGLATIEDLIE EIVGDIDDEVDTAEVLFTKLSDNKYVIYGKMTLDDFNEEFETNLEMEDVDTVAGYVITKL GMIPAKGEKLSVPLDNGMVLTTRRMKGSRILTLLLTIPNKKKEEIED >gi|297148814|gb|ACGQ02000002.1| GENE 636 725690 - 726151 267 153 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00638 NR:ns ## KEGG: LCRIS_00638 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 153 1 153 153 195 67.0 4e-49 MEKKRVYLVFVFLLLIPYLCSLAVIGIGYNALVLHSSSIWRSTIGALMGSFIMFAIKATI QRPLDLMANQINEGLFEQFLRFFSVRRRPWLQLANIVLDFILCYIATFLVRTFLNLDQIV GNSVGITLIVMFVSTCIGAYLEYDNLSIDPGQH >gi|297148814|gb|ACGQ02000002.1| GENE 637 726154 - 726630 516 158 aa, chain - ## HITS:1 COG:no KEGG:lhv_0679 NR:ns ## KEGG: lhv_0679 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 158 1 160 160 165 55.0 5e-40 MKTTIDELFFYGRPFPASLIDQNRSFSEQNMMMENDEEFANFLKENNLENNRASLVVFNP DSFMYWYGAVSDHELTKSHGMLKMNLPKSEVAVKERNGDLANLSTPLNSSIPSFLKDVTA EGIKVYENLGDSPLPYVLQKVDLDTKKLTQVLYLKVSE >gi|297148814|gb|ACGQ02000002.1| GENE 638 726641 - 727456 792 271 aa, chain - ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 261 1 262 264 128 33.0 1e-29 MSKITKVSAQKRSGRYNIFLDDKYAFSASERTLTEFRLFKGSELTDKQIEQIKQFDTDAK ASELAARYLSYQIRTVDEVRQYLVKHELSPEAIDSAINEFINLGYLNDFEYARLFIKNDL AVGQDGPASVAQKLRLKKVPDNNIEDALAEVSSEDWIEVGKRLIKSLKNQLGKIAFNEVK KKMTFKLLQHGFRTDLVQVIIDDLDLVNEETQEDEALKKQGIKAYKRFKRLDESQRKYKI RTYLYSHGFSNNDIDRFLAGEVISLSELDEY >gi|297148814|gb|ACGQ02000002.1| GENE 639 727597 - 728973 1435 458 aa, chain + ## HITS:1 COG:SP1901 KEGG:ns NR:ns ## COG: SP1901 COG2265 # Protein_GI_number: 15901728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 19 453 1 433 436 362 44.0 1e-100 MVYQKKDLKKDIIITIKRLGINGEGIGYYKKKIIFIPGALPDEVVVAKIIKTHPGYIEGE LVRIKEKSPNRVAFPDKVDPEIGGLELAHLSYDKQLEFKKDIVLESLRKYHPRGYQKYKV KNTIPAKENWHYRAKAQYQLEFSKGKTKLGMYAPNSRRLIDLPEMPTQSKNTQKTERLIK KLIDKYHLPVANWRKHFDGIKTIVVREAVSTGEMQVTFITIGKKINGLKKLAQEVMKLDN VVSVFQNETDWNNPQVWGNKTVKLAGKNQIIEHILDKKFALSPRAFFQLNPEQTEILYSE AIKLLNLTPDQVLIDAYSGVGTIGIIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNTE YLQGSVEKILPQLKNSGVPIDALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQ DLVMLSEVYDVRVIENVDMLPQTARCEAIAKLVLRKEN >gi|297148814|gb|ACGQ02000002.1| GENE 640 729387 - 730544 1344 385 aa, chain - ## HITS:1 COG:lin1454 KEGG:ns NR:ns ## COG: lin1454 COG3425 # Protein_GI_number: 16800522 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Listeria innocua # 1 385 1 388 388 351 47.0 2e-96 MKVGIDKIGFYTPNKFVDMVDLAEARNVDPGKFLIGIGQNKMAVADKSQDAVSMAINATS EYIDEIDLEKLGLLVFGTESSVDQSKSASLFVKKALNLPKNIRTFELKEACFGLTAAILT AIDYVRAHEDKTAIVIGSDIARYGVATPGEVTQGAGSISLLIKKDPSILEIDSETSMYSD DIDDFWRPNNFKCALVDGKYSTNVYLDFFKNCFEDYTQKQNLKTSDFEALLFHLPFTKMG QKALKLAIEGQEPETCARLLDKFVASATYSKEVGNIYTASLYMSLLSLLEVDQPKAGSLI GLFSYGSGAMAEFFTGRLVEGYEKQLYPAKHKELLENRKKLTVSEYEEIFNDSLKDLAAS EEINSDANGWYFAGTNENIRQYSKK >gi|297148814|gb|ACGQ02000002.1| GENE 641 730547 - 731758 1076 403 aa, chain - ## HITS:1 COG:SP1726 KEGG:ns NR:ns ## COG: SP1726 COG1257 # Protein_GI_number: 15901559 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Streptococcus pneumoniae TIGR4 # 29 399 46 423 424 243 40.0 6e-64 MSASERRESLLQKGIKLNKVDYDLLAELDTLSENVIGKLTLPLSILQVAVVNGKSFQIPM ATEEASVVAAANHGLNIFNQNGGAIAKSERTGIWGQLVFKVEKFSLASFKSKELSYLNAA NQEFASLVKHGGGVKKIVSELKDNLLFLRVLVDPAESMGANRTNAILEFLGQKISQEFAV EKLYAILSNYPSQFTHAKVSLAFASLTKTQDKKIGEEIAQKVALLSKIGKQDSYRAVTNN KGIMNGVDAILLATGNDFRAVEAACHQAASLSGTYQSLSSWQIEDGKLVGEISLPLAIGV VGGSIKSRSDVQVAYNILGQVSVSELAELIATVGLANNLAALLAISTVGIQKGHMNLQIR NVLKNLSATDNEKKAVKQLMQEQKRYGETDAKNFLQKIREENS >gi|297148814|gb|ACGQ02000002.1| GENE 642 731776 - 732921 1474 381 aa, chain - ## HITS:1 COG:HI0771 KEGG:ns NR:ns ## COG: HI0771 COG0183 # Protein_GI_number: 16272712 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Haemophilus influenzae # 1 380 1 393 393 326 47.0 4e-89 MQNIYIVAAKRTPFGRYRGQLAAFNAVELGTFALKDALMAANLRSNELDALFMGNVLSAG LGQNMARQVAINSGMKNESVATTINEVCGSSLKAVRLAQAQMLIGDLKLVAVGGSESMTN APLLAKKSEKDNPHFIDSMLYDGLTDAFSNKLMGNTCENVAIKYGISRQQADEFSVDSHK KAAIAQEHGFFDQEISPVVDLSYDENVRPDSSVEKLASLKTVFKADGVATAGNSSSLSDG ASMLILATEDKVKELNLKPLAKLSAYAEVGLDPQIMGFGPKVAIEKLLQETGQKLADIDL FEINEAFAATSLAVEKELHLDHNKVNIHGGALALGHPLGASGARILGTLAHSLISENKER GIASLCIGGGLAIAFEIERVK >gi|297148814|gb|ACGQ02000002.1| GENE 643 732963 - 733919 1024 318 aa, chain - ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 13 318 8 308 308 279 44.0 5e-75 MMEKNAKKSKRLKWLGGIFAFIVLAFLGAGMYFYNVAVVPGHKTFLSSSKPLTKSDPLYQ EKLWYKKATKKHLYMMSSDNKLRLDANYIKNGNSQKTVIILHGYMNNKDGMGEYAALFHS LGYNVLLPDARGHGQSQGNYVGYGWMEKDDVKKWTQKLLKDNPKQEIVIFGVSMGGATTM MTSGLKLPSQVKAFIEDCGYTNAKNEIEHEAQALYNMPTFPRFPLVEVLSGITRLRAGYF LGDADSIKMLKKNTKPMMFIHGAKDNFVPTEMVYKNYRASNGPKQLWVVPGASHAKSFAT HPQEYKAKIKAFLNKYIK >gi|297148814|gb|ACGQ02000002.1| GENE 644 734088 - 734372 168 94 aa, chain + ## HITS:1 COG:no KEGG:LBA0629 NR:ns ## KEGG: LBA0629 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 94 15 108 108 77 41.0 2e-13 MRLIDFLQVSKDLTGQTQFYLKQESQLLPLTKLSLTSTHCFLYSGTTPLTKDKIFNIIAR TKNKQIELKIIINNHEFPVYGLQIIVDKKIAILM >gi|297148814|gb|ACGQ02000002.1| GENE 645 734409 - 735311 1178 300 aa, chain - ## HITS:1 COG:L177590 KEGG:ns NR:ns ## COG: L177590 COG1210 # Protein_GI_number: 15673321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 2 298 12 309 313 390 68.0 1e-108 MKVRKAVIPAAGLGTRFLPATKAMPKEMLPILDKPTIQFIVEEAKASGIEDILIVTGKSK RPIEDHFDSNPELEANLEEKHKEKLLELTQSITNLGVNLYYTRQPHPAGLGDAIYRAKSF VAGEPFVVLLGDDLMSDKVPLTQQLINRYNETHASTIAVKRVPHEDVSKYGIIAPDGEIT NGLYNVKSFVEKPAVDKAPSNLAIIGRYLLTPEIFDILGKQKPGAGGEIQLTDAIDTMNK TQRVFAHVFNGERHDVGNKEGYLETSIEYGLTHPETKDALRAYILDLAKKLEAEKKPNKK >gi|297148814|gb|ACGQ02000002.1| GENE 646 735379 - 736239 722 286 aa, chain - ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 275 16 276 289 116 27.0 4e-26 MIKKIDWRQFFKIFSKRMSRGEINQGSIVIAYYLLFSMFPIIIIAGNIMPLFHLKPEVVE EYLIYGLPTKVADFIMPIVKSVLQKQSTGYISFGILIALWSFSSLTNAMRISMNRIYGVR QQELRFSFGRKLLERGVVVLITGLMIILLTVLTIALTFGQEILDSVKAFLGINYLGIESI FTYKWLVLLAVMLVVIAYFNFALPNVKKRKRAIWPGVFINLVGWSGLSYLFGLYLSHFKL SFENYGIVGTFIIFMLWLNLSSLLFLLGVCVNATIDELKHGDAKIR >gi|297148814|gb|ACGQ02000002.1| GENE 647 736232 - 737059 1136 275 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 261 1 252 252 275 54.0 8e-74 MITLKSTRELKGMQKSGRLLASLFEALRDVIKPGISTWDIEEFAQKFMKERGGRLSEQGF EGYKYGTCISVNDEIAHAIPRKNLILQEGDLVSVDVTCNLDGYETDSCTTYPVGKISEED QRLLDVTKKAMYLGIDQAQVGNRIGDIGAAIQHYVEDENGFGDVRELIGHGIQPTIHEDP EVPHWGKAGHGLRLKEGMTITVEPMLEAGGDWRIMQKTVDDPNDDWVYYVTPDGSKAAQF EHTFAITKDGPKILTLQKPYDGLEKYLPHFDELDD >gi|297148814|gb|ACGQ02000002.1| GENE 648 737267 - 737713 626 148 aa, chain + ## HITS:1 COG:SP1297 KEGG:ns NR:ns ## COG: SP1297 COG0716 # Protein_GI_number: 15901157 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pneumoniae TIGR4 # 4 145 5 145 147 112 46.0 2e-25 MQVKIVYASMTGNDEDMAEILEEDLQDAGFDVDSSDVSFTDASDYLNADICVFVTYTYGE GKMTDELEDFYDQLKNLDLSGKKFLVMGSGDKTYKDHYCENVFDFEKVFLACGAEEVIKP LTVENAPDDDDIAKIDEIADELAEKFNG >gi|297148814|gb|ACGQ02000002.1| GENE 649 737794 - 738354 151 186 aa, chain - ## HITS:1 COG:no KEGG:lhv_1083 NR:ns ## KEGG: lhv_1083 # Name: not_defined # Def: putative transposase # Organism: L.helveticus # Pathway: not_defined # 1 186 100 285 285 368 96.0 1e-101 MNKKVDLNGHFLIIDSFPVPVCQPIRNYRAKIFRGYANIGYKATKKIYFYGFKVHAIVSD DGYILDYVVTKASVHDAKETVELLENAHPSNYYLLGDEGYLGKELHQQLKQMGYELWTPY RKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAY CLERFN >gi|297148814|gb|ACGQ02000002.1| GENE 650 738757 - 739182 292 141 aa, chain + ## HITS:1 COG:no KEGG:LBA0621 NR:ns ## KEGG: LBA0621 # Name: gtcA # Def: putative cellwall teichoic acid glycosylation protein # Organism: L.acidophilus # Pathway: not_defined # 1 140 34 173 174 155 61.0 5e-37 MFFGFVAALINTIVFVVLHNNFKVVLVLANTLAFIISNLASFFFNHYAVFTHHVDKSKSI WHKLIAFFTFRIISIIPDTLIMLVGLSVLRWNTVLVKLIDQLLVGIFNYLTTKAVFQKND HFIRERIRQYVIESKQKNKDH >gi|297148814|gb|ACGQ02000002.1| GENE 651 739212 - 739646 517 144 aa, chain - ## HITS:1 COG:BH2982 KEGG:ns NR:ns ## COG: BH2982 COG2153 # Protein_GI_number: 15615544 # Func_class: R General function prediction only # Function: Predicted acyltransferase # Organism: Bacillus halodurans # 2 140 3 145 155 96 32.0 1e-20 MWYVKKWNELTPKEIWQILDLRISTFVVEQKRIYHEIDKTDLSALHIFAIKNDKIIAYAR IFLNEKYVSFGRVVTSEVVRGHGYGMKLLKKIMATIKDYFPGKEIEIEAQEQVKDFYKKI GFKTIGTPFIFESTPHIKMVHERL >gi|297148814|gb|ACGQ02000002.1| GENE 652 739649 - 740089 411 146 aa, chain - ## HITS:1 COG:mlr8209_1 KEGG:ns NR:ns ## COG: mlr8209_1 COG1846 # Protein_GI_number: 13476782 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mesorhizobium loti # 3 145 13 155 160 80 32.0 8e-16 MLNHKEINIIRKFNRQYVIALGVLNKKIFKTDLSWPEGRILEEIAEEDDITPIQIVHKLQ VDKGYTSRIISQLEKKMLIEKIPDSQDRRSIKLVLTAKGLEAYKSIDMRSNDQINNLIED LSDSQQIELFESIERVNQLLFERKEK >gi|297148814|gb|ACGQ02000002.1| GENE 653 740269 - 741411 1638 380 aa, chain - ## HITS:1 COG:lin2681 KEGG:ns NR:ns ## COG: lin2681 COG0381 # Protein_GI_number: 16801742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Listeria innocua # 1 379 1 377 379 479 62.0 1e-135 MKQIKVMTVFGTRPEAIKMAPLVLKLKSDARFEEVTVVTAQHREMLDQVLDIFKIKPDYD FNIMHKNQTLADITTKVMTMLTDTIKKEKPDIVLVHGDTTTSFAASLATFYEQTTLGHVE AGLRTWNKYSPFPEEMNRQLTDVLSDLYFAPTSLSKQNLLKESHPADNIFITGNTAIDAL HETVQKDYHHDVLDEIKPGNRVILVTMHRRENQGEPMRRVFKVMKQVVDSHDDVEIIYPV HLSPRVQAVAKEVLGGDPRIHLIDPLDVVDFHNLAQRSYFIMTDSGGVQEEAPSLGKPVL VLRDTTERPEGVEAGTLKLVGTEVDKVRTEMVKLLEDKNAYEEMANAKNPYGDGHASDRI MDAIAYYFDKENTERPAEFE >gi|297148814|gb|ACGQ02000002.1| GENE 654 741480 - 741659 127 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256851533|ref|ZP_05556922.1| ## NR: gi|256851533|ref|ZP_05556922.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 59 1 59 59 85 100.0 1e-15 MDLRFFYLFISGFLITIGSFCSVFGVAEKSTLKKWILISTGLICWGIVAILLIAKIVQY >gi|297148814|gb|ACGQ02000002.1| GENE 655 741826 - 742122 401 98 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1868 NR:ns ## KEGG: LGAS_1868 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 95 1 95 99 95 69.0 5e-19 MNKLVRDKIPEFVTNAKFRKLNQDEILPALKNKIVEEANEVKDATSEEKLIEELADVYTV LKAFLDFKGITEEELLKVVNDKKAFKGDFSKFLFMEKS >gi|297148814|gb|ACGQ02000002.1| GENE 656 742306 - 743580 1078 424 aa, chain - ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 7 416 25 451 454 325 42.0 2e-88 MAKWRWLVALRDAFISVMPISIVGSLTVLIPGLINAAKTELGLGAVEYALTPVINISNLI YQGTFQLFSLYFALAWGYQLARSFEVNRLAGAITSLGCYLMSIANVVKLNINGDEVSIKN AFNTSQLSSLGLFTSLIFGAVGLSIFILMTKARLTLRFSSYMPHAEEAAFIALIPMIISL SIVGAINYIFQMVTGTYFGNWLLNTIQNPLTKMGQGFGIVLLITFLLHAFYFFGINGMSV LVPVIDSIWLTPQNANLTAVKSGHVVHYLWTRNSFDVYSWIGGTGDTLVLILLILLISKR SDFRTLAKIAIGPGFFNINDPIVWGLPLVLNPLYLIPFILAPLANVTLAYWATAWHLVEP VSTSVPNVIPPFLNAFLATNYDWRALVLVAVNVIVAILIWLPFVLAGERIAKEQEKHSLF SFEY >gi|297148814|gb|ACGQ02000002.1| GENE 657 743646 - 744872 1460 408 aa, chain - ## HITS:1 COG:lin1833 KEGG:ns NR:ns ## COG: lin1833 COG0513 # Protein_GI_number: 16800900 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 12 407 16 416 442 199 32.0 8e-51 MYSKEIQAILTKEGKKSPTLIQKASYESLKSGANVIGLAKTGTGKTLAYSLPLLETTKPG SDASMVIFEPTTELAIQTRNAIRPYVLALGLNVLALVGSGNRSRQIEQLKKKKPEVLVVT PGRFFDLFSDNKIKLNKIQKLVIDEADDILEFTKLELLSSLGQNLPTTSQVVLFGATESS VTQEAEELFATNFFLIDVRPEQKSPVEHYFLKVTNRYKIQFLQRLVKLDGFKGILFFDSN ETLEKFARIFSHSQTKFDLLTNNQPKTRRQKAINDLVAGKTRLLLATDLAARGLDIPKLT YVVNYELPEDENTYLHRAGRTGRMGHDGFVVTLGDDHDLRDMRKLLTGIDLKQVYFKGFG LSTEKPKKTEKKQLEKAVSSEVKKAKKHHKKRKRNQKNKGYHPRKEKK >gi|297148814|gb|ACGQ02000002.1| GENE 658 744872 - 745585 700 237 aa, chain - ## HITS:1 COG:no KEGG:FI9785_664 NR:ns ## KEGG: FI9785_664 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 233 1 231 236 230 48.0 3e-59 MPHFRHRSTLPLIIISLFLVIGALLFAYRTLPKRTTLPTGSNLSVIGVKLDQYRASVDLH KLQAAGVSFVYLRATQGKSYFDDDYERYRSQIQGTNLAFGSVLYFSDESSVRAQYKYFNK KTANNTGSLPILLEAAPGSDSNKLAFWNHMGQLAKLFLKDGKSVMVQGDIKYKKYFPAAT KFMSTASQAPDKLQYSFWRYTNKGHIKNVKAMEYDVEMYAYNGTMGQYKQLYGDLTQ >gi|297148814|gb|ACGQ02000002.1| GENE 659 745704 - 746999 1320 431 aa, chain + ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 429 7 437 440 330 44.0 3e-90 MKKEITFTQGLATLVGSVIGAGVFFKIGTISQQTNSAGLTIFVWILAGFLSLASGLTIAE VAAELPVNGSIQYLEYTYGSIWGFLFGWAQIIVYFPAEAGASSSILGTQASNLFGNKIAA LPISLCMITFIFLTNLLGTKFSSKLQSVVTVIKVIPLILIIIFGLMAPEQHFSFTGFASK NAVPLVTAISGGLLSALFAFDGWVSVTNLAGDLKNPQKDMAKILIWGLGIVTAIYVLVNF VFLKTLPFNSIYGNQNTAFNTSIKLFGNMGGKLVTIGILISCYGAANAFMLTGMRAPYIL AQNNLLPFSHQFKQVNKKTGVPVLGAVTIWLITMAMISLGNFDILTDMLVFVMWFFTIML TLCQPILRRRKPNLNRPFMVPFYPITPIIALAGGIFIIIMTVINQFWLSLIGSGLTVLGL PIYFYKKKQNK >gi|297148814|gb|ACGQ02000002.1| GENE 660 747048 - 747611 743 187 aa, chain - ## HITS:1 COG:BH0084 KEGG:ns NR:ns ## COG: BH0084 COG0634 # Protein_GI_number: 15612647 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Bacillus halodurans # 1 183 1 179 179 170 48.0 2e-42 MRDNIEDILESTLFSRDDIHEMCVRLGKQLTEDYAGKEPVLVGALTGAIFFMTDLAREMD VRCKMDFIDVSSYGNGLESSGKVKLVKDVHTDLTDKDVLIVEDIVDTGHTMKFMKQHFLS LGARSVKCVALLDKPSRRVDDVVVDYYGSEVGNQYVVGYGLDFYNMFRNIPYIGVVKPEV IQAYANK >gi|297148814|gb|ACGQ02000002.1| GENE 661 747703 - 749043 1524 446 aa, chain - ## HITS:1 COG:L84992 KEGG:ns NR:ns ## COG: L84992 COG1253 # Protein_GI_number: 15673816 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 6 427 1 419 430 236 31.0 9e-62 MDTSQIVTNLVATLIILGFATFFVISEFALVQTRPSQLEDMITNKEGNLKKLKRALHMVH NLNEYLSTTQVGTTLVGVVLGWFSTDTLSELIIRGLKFSPLGESLAKSVGAVLGVLLLTY LEVVFTEIVPKNIAIDMPVKMLMVIVTPLKCFHTLVYPFVWILNTSSNGVLKLMGFKEAA EENEIYSQSEIIKLSRLAVTGGALDKEDLKYMERAFELNDKVAKDIMTDRTRLTVLDATD TVKTALKLYLDEGFSRFPVVRDNDKDDVVGYVYAYDIVEQSNEGNNASLSRLIRAIITVP ESMPIQDILQLMIQKHTPIVLVVDEYGGTSGIVTDKDIYEELFGSIKDEIDDVSDEYIIR DKDGKVRVSGKTTLYDFERFYHEKLKAFQDSDIITIGGYMMEHYPDLKKGDSVTVEGYKF EVAEIEQGFMRWFNVEKLNNNSKTTE >gi|297148814|gb|ACGQ02000002.1| GENE 662 749110 - 749766 643 218 aa, chain - ## HITS:1 COG:CC0324 KEGG:ns NR:ns ## COG: CC0324 COG0778 # Protein_GI_number: 16124579 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Caulobacter vibrioides # 1 212 1 213 220 89 29.0 7e-18 MDFEEVFNKERATRKFSTRKVDDELIKEIIKKAQQSPSLLNSQPWRAYAITGGALLKLKR ENKAYIARKAPVSEDFSTMLSIDWSTFPSQNMSNMGAFVTYFLHNKTELFENANNNMFYA PAIIFLTIPKKSPAWSVFDLGIFAQSIMLLAINRGLDTMPAHSLVAYPDLIRKYTNIPDD EEIGMAIAIGYADKAAEVNSPTYIPGRVPFDKIFKLIK >gi|297148814|gb|ACGQ02000002.1| GENE 663 749891 - 752260 2975 789 aa, chain - ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 7 785 15 794 796 940 57.0 0 MAVNYDSQDYLRSVDAYWRAANYLSVGQLFLMKNPLLKTELKAEDVKPKPIGHWGTIVPQ NFIYAHLNRAIKKYDLNMFYIEGSGHGGQVMVSNSYLDGSYTERYPEITQDEAGMTRLFK RFSFPGGVASHAAPETPGSIHEGGELGYSLSHGVGAILDNPDVIAAVEIGDGESETGPLA ASWFSDKFINPIHDGAVLPILQINGFKISNPTIVSRMSDSELTQYFEGMGWKPYFVNVHG LSHMEAHELMAKELDKAIEDIKAIQKHARESGDDSMPQWPMLVLRAPKGWTGPKFDLDGN PIENSFRAHQIPIPVDQEHMEHKDMLIDWMKSYKPEELFNEDGSPKDIVLENTVQGDQRM AMNPVTNGGINPKRLHLPDWRNYAIDFDKPGSVEKQDMAEWSKYLNEIANLNPTNFRGFG PDESKSNRLFTILDGQKRQWMEDIEEPNDEDLARSGRMIDSQLSEHQAEGWLEGYVLTGR HGFFATYEAFGRVVDSMLTQHMKWLRKAKEQYWRHDYPALNIVDTSTVFQQDHNGYTHQD PGLLTHLFEKNRPDLIHEYLPADTNSLLAVSNKAFADRECINVLVTSKQPRPQWFSKEEA QRLVENGLSYIDWASTDEHAEPDVVFASTGTEPTLETLAAIDLLHKNFPELKIRYINVLD VMKMQSQRKNPNGLSDEEFDRLFTKDKPVIFAWHGFKPMMESIWFDRHNHNVSIHGYEEN GDITTPFDMRVLNEIDRFHLAKDAVEHLDLPAAGFIDEMDRLLSKHHTYIRDNGKDIPEV TEWKWKGLN >gi|297148814|gb|ACGQ02000002.1| GENE 664 752398 - 753123 671 241 aa, chain - ## HITS:1 COG:SP2020 KEGG:ns NR:ns ## COG: SP2020 COG2188 # Protein_GI_number: 15901841 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 236 5 236 242 128 33.0 9e-30 MTDFVYRAVMRDIKQNILAQKYEDMRLPDERSLASHYQVSRSSMKRALELLAQQGIIFKK RGSGTFINPLYLKNQALFRYEGSNLGLTDSFKVPGKEQKIKLLEFKVINASKELAQDLFI NESDFVYQFKRLRLLDNQPFLIETGYLPIKIVPELTPEILKDSLFNYLEDTQNKTVTRSF LNITVEPSNSEDQSELNLQANEPVGVMEGIFFLDDGTPFEVSNMRIHYKYMRYNSFVNLN Q >gi|297148814|gb|ACGQ02000002.1| GENE 665 753139 - 754062 984 307 aa, chain - ## HITS:1 COG:yaaF KEGG:ns NR:ns ## COG: yaaF COG1957 # Protein_GI_number: 16128024 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli K12 # 5 305 4 303 304 233 41.0 5e-61 MNKKPLIISTDPGIDDAVALTISLFAKELDVKLIAATWGNVNLEKTLNNTLKLETFLGTK VPVVSGAKLPLVKKPIDASEVHGKSGMDGFDFPEPDKGLLVSGLAATKIHEVVANSSEKV TLMQIGPATDFALYFRQYPDDLEKIEELVIMGGAIGRGNYGPYDEYNVSGDPEAAKIVFE SGVKIRVAPLELGHQAFVKQDTMDIVRNYGKNDDMLYSILSNLHDGTLTDGLEIYDALAV GMLLAPDMYTFKPAFVAIDTNDSYTYGASVMDFDNFFGKPANAEIGVAIDREQFVSWFAK VLKEADK >gi|297148814|gb|ACGQ02000002.1| GENE 666 754154 - 754846 720 230 aa, chain - ## HITS:1 COG:SPy0889 KEGG:ns NR:ns ## COG: SPy0889 COG0120 # Protein_GI_number: 15674914 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Streptococcus pyogenes M1 GAS # 7 223 2 217 227 194 49.0 8e-50 MDKNTQDELKKEAAKVAADKVQAGSVLGVGTGSTVKFFIDWLGERKEKEGLTLKHIVTTS SRSKKQLESYGFKVDELADVDEVDLTVDGADRVDSQLNGIKGGGAALTLEKNVAVNSKKN IWIVDESKVVDHLSGFKLPVEVLPVSCMQVKKRLEKEGLNPEFRMNGNQKLTTHYGNYIL DLDVSPIPVPTGLADYLDHTVGVVEHGLFLNICDEVIVAKSNGTIQEIKR >gi|297148814|gb|ACGQ02000002.1| GENE 667 754846 - 755769 1034 307 aa, chain - ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 3 303 4 304 304 242 46.0 8e-64 MKKIVVVGSSNVDTTLHVVDFPKPGETINALDITEAGGGKGANQAIAAAKAGSETYFINR VGEDSSGRFILKQLKCYGVDTTYVQTTSGTNTGHAYINLNEAGQNNIIIDHGANYELSID DIDAAEELIKDSDAIITQLETPIEVAIEAFKIAKKNNVVTVLNPAPAIKDLPKELLKLTD MIAPNETESSLITGIEVTDLESIKANSDKLHELGIENVVITYGDKGSYISTSNVEKLVPA FKVEAADTTGAGDTFIGFLTSQLNADFSNIEQAATFAARASSIAVSRLGAQPSIPTYNEV KELMGRE >gi|297148814|gb|ACGQ02000002.1| GENE 668 755836 - 756642 669 268 aa, chain - ## HITS:1 COG:L51063 KEGG:ns NR:ns ## COG: L51063 COG1085 # Protein_GI_number: 15672818 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Lactococcus lactis # 2 251 5 247 261 227 44.0 2e-59 MNDEPLVYMYSVGKRKPYDYDYANRQSNTQNPCPFCNPQTLTDIYETDGDKIWLHNKYPT LKDTMQTILIESSDHQGDISTYTREENRELMKFGLKCFQKMYNSGDYQSVLWYKNFGPKS DGSLQHPHMQIVGLDKMDGYKNIQENNFTGFEVGKSGDVEMNLSKRPVQGYQEVNIVTWH NQNLDTWADLIQKSTQYVRSVLSHGVDSYNLFFYPIKNGEGTCCKVIPRFYAPPYFVGYK LSQVDDDETLEWEAARLKGFITSGISLT >gi|297148814|gb|ACGQ02000002.1| GENE 669 756867 - 758162 1470 431 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 42 381 19 365 419 150 30.0 4e-36 MKFKNKVALAAMLGVSLLATACSTGNKTSSSSSSIPTKITKKTTITFWYSLTGTSKSTLE NLTKEFEKKNPNIKVQLQNQGGNLGDLQSKLVSGLQSPKNLPTITQAYPGWLYSAAQNKM LVNLTPYVNNKEIGWGSYSNSKIKSALWDGAKINGTQYGVPFNKSVEVLFYNKTLLDKYG VKVPKTMSELKKASQEIYEKSEHKVKGVGFDSLNNYYMLAMKEKGIDFNKKLNFASSESK AVINYYADGVKDGYFMMAGTEKYMSTPFDSGKVAMFVGSTANEAYVKSGLTQGNEYGIAA RPSSINVQQGTDIYMFSKATKLQRTAAFKYLKFLTSKASQTTWANKTGYMPVNTDVLDSA SYKASKTSKVPAILEATTKKLYYLPVTKNSESAYDQINANMQTILADAGKKKNWTSDVTT GQSKLTAAWKQ >gi|297148814|gb|ACGQ02000002.1| GENE 670 758238 - 758861 681 207 aa, chain - ## HITS:1 COG:CAC3094 KEGG:ns NR:ns ## COG: CAC3094 COG1392 # Protein_GI_number: 15896345 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Clostridium acetobutylicum # 6 207 8 210 210 108 32.0 7e-24 MSRKSDQYYFDTFLKCANFAYEASQLLNEVVNDYTSDRVSNLTDKMHEIEHNADHEKHEM TEVLIKAFVTPIEREDIMELAHNIDNMVDRIEDVLMRLYCDNIQKIRPEILPICELLIQN TNEVVELIKDLPKFKKNAEFKEHIVNINTMEGKADVMFIDNMRNLHVHEKDALQVLVWRD IFNCLERCHDACEDVASSVEKIVLKNA >gi|297148814|gb|ACGQ02000002.1| GENE 671 758874 - 759923 962 349 aa, chain - ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 29 349 20 335 335 186 33.0 4e-47 MDISLSGFLQSLANPAMLTTVVLTLGVIFVNGWTDAPNAIATTVTTRGMAAKPAIIMSAV FNFLGVLIMTQINASVAETISNMVDFGGDAHASMIALAAALFSIVVYSVGASIFGIPTSE SHSLIAGLTGAAIAIQGSFKGINWNEWIKVLYGMVLSLVLGFALGWIICKCVILICQSMD RRKTNRFFSGAQIAGAAAMSFMHGAQDGQKFIGVLLLGMAFVNGQSSATSMVIPVWLMML CSITMGVGTSVGGEKIIKSVGMDMVKLEPFQGFSSDLAGAISILISTLYGIPISTTHAKT SSIMGVGAVKRLSSINLNVVKDMVLTWIFTFPGCGLIAYLMAKLFLLVF >gi|297148814|gb|ACGQ02000002.1| GENE 672 760002 - 760664 753 220 aa, chain - ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 4 212 3 213 218 195 53.0 4e-50 MSTFINAYSPTNLRFLFEGLLVTVEVSIISIVLSYIIGLILGTIRYMKIKYVSAIVGVII DIIRNLPLLLIIFFTYFGFPELGIHASPFWAAISALVIFESAMLAEIVRGGIQAVPDGQM EGARSNGMTYLQAMRYVIMPQAMHMMMPALLSQFVSLVKDTSLATIIILPELLYHAQIIY SQNTTYMIPMYLIIAAMYFVVCFALSLFAQRLRKKLGKEA >gi|297148814|gb|ACGQ02000002.1| GENE 673 760680 - 761318 453 212 aa, chain - ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 2 211 3 212 216 195 51.0 7e-50 MIEILQNNWSNLLSGFGVTIMISIISLCASLILGTVFAIMEVVPNKIAQAVAHTYIELFR NIPLLVITMIFYLIVPQYLFKISGFTAGCIGLSLYTSAFIAECIRAGINSVGDGQMEGAR SNGMTYMQAMRFVILPQAFKVAIPSLGNQFINLIKNSSVLAFVAGFDLMYQGDVIAFSSF QTVNTYLVVGCFYLVLTLPLSYYMRYLEKKIA >gi|297148814|gb|ACGQ02000002.1| GENE 674 761315 - 762142 988 275 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 9 267 7 272 273 233 49.0 4e-61 MKKFCKWIFASFSLLFLLTLSACQKSSKSLDTYDKIKASQTITWGVKADTRLFGIMNIKT SQLEGFEIDLAKDLSKKMLGKNVKVNLVQTTAKTKIPLLRNGSVDALLSTMTITEERKKI VDFSTPYFNAGQAILVPKNSKLKNVYDLKKRGITVLAVKGTTAVANIKKFAPKANVSEYD DYGQAFSALKAGQGQALTTDNGILAGIADENPGFKIVGGTFTSEPYGIAVRKGDTKLRNK LDQALEELKADGTYQKLLKKWFSGIPGFSIKEASR >gi|297148814|gb|ACGQ02000002.1| GENE 675 762152 - 762928 292 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 13 231 1 221 223 117 36 1e-24 MYLYSIFERRTNMGAIIEFKNVDKYYGKYHALKNINLEIDEGEIVSIIGPSGSGKSTLIR TMNGLEKINSGQLIVTGYDLADKKTDINKIRKNVGMVFQHFNLYENHTVLENIMLAPRIV LKRPEAENKEIAMKLLKRVGLEEKADLLPKQLSGGQKQRVAIARSLAMKPKVILFDEPTS ALDPEMIQDVLDVMKYIAQAGITMVVVTHEMGFAREVGSRLLFFDKGEVLEDSHNPKEFF AHPKTERAREFLSKVISH >gi|297148814|gb|ACGQ02000002.1| GENE 676 763010 - 763825 229 271 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 48 257 147 355 398 92 29 3e-17 MTGAKRLAKVEQEKEEKRVSDGKELTPLKQGLALEDVHFGYNKDKEILHGINISVPKGKT VAVVGPTGSGKTTIMNLVNRFYDVDSGRITIDGTDIRKFTIASLRNSVGIVLQESVVFSG TIFENIAFGKQDATLAEVEAAAKKAQIHDYILSLPKGYETEISENGDTFSTGQKQLISIA RTLLTDPDFLILDEATSNVDTVTEEKIQVAMDEVVKNRTSFVIAHRLKTIINADKIVVLK DGTVLEEGSHKELLNRKGFYYKLYTDQMVLD >gi|297148814|gb|ACGQ02000002.1| GENE 677 763859 - 764767 663 302 aa, chain - ## HITS:1 COG:lin2895 KEGG:ns NR:ns ## COG: lin2895 COG1132 # Protein_GI_number: 16801955 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Listeria innocua # 1 302 1 307 590 243 41.0 4e-64 MNNSKSALKYFYKYLKPHWKAIFWVTVFSLISTFLQVLAPTYLGKAVTKLTSYVANGGSI NSFLEIVAFLAASYLLSTVAIFISWVIMSNFTAHANNSMRKNLFNKLQRMTIRYFDTHQD GKILSLFTSDLDNIFNAMNQAIFELIAQVSLFIGTIYIMFKINVKMALFTVMTLPLALIL ALVLIKKARKYIGLQQKEISNLNGFINEQLNGQAVIITNGLQKQSVQEFKEYNKAVRNAM FKGQFYSGILFPLMNGLATLNFAIVIAGGTYLILTNQVSMAAGLGLMVMFIEYFYTYFQP LT >gi|297148814|gb|ACGQ02000002.1| GENE 678 764767 - 766503 263 578 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 329 558 126 354 398 105 30 3e-21 MSLFQILFRHLRQYPKDICGALIAMLLSALAVLYQPRLLESIQKDLLKGDTSKVISDSIW IIGLGLIAIVAGVLNVYFAAKLAQGVTSDLREEVYEKIQSFSYANIDTFSTGSLTTRLIS DMNQIMNLIMSIFMQLLRLPIILVGSFVLAIITIPRFWWITLLVLVVLTIVGLFILKLVN RQFEQYQVRLDKVANLAQENLLGIRVVKSFNQEDRQVNKFSLASDALNRLNLNIGYLMSA VIPAFSIIAYIAICAVTTMIGLQIKLHPTDIAVISPYVNYILTLLFVVWIIGIALMNVSR GKVSLGRIKEILDTKPSIIFNEAAPDDTLSGDVEFDDVSFTYPGNTKPTLQHISFNVQAG EMIGIVGATGSGKSTLAQLIARLYDPTSGIIKIGGSDLKKVNEKALRKSVSFVLQKAILF SGTIASNLRQGKSDATKAELERASAIAQAFEFVRNYQDGFNHEVQERSANFSGGQKQRLS IARGIISNSPILILDDSTSALDAESEKKVQDALEHKLKDTTTFLIAEKIVSVKNADRILV LDEGKLVAQGTHEELLKTSNIYQEIFKTQQAREKRGEL >gi|297148814|gb|ACGQ02000002.1| GENE 679 766500 - 766943 418 147 aa, chain - ## HITS:1 COG:no KEGG:FI9785_616 NR:ns ## KEGG: FI9785_616 # Name: not_defined # Def: putative transcriptional regulator # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 7 145 6 145 145 134 51.0 9e-31 MKYVKMTEKMNMAIINSGRAYQTWDMNNGLPTYLSVILYELFYHECLSQKELVERSGIPK QSINKGIKMLQEKNYLICEYNGGDRRVKECYLTKAGIEYAKTKVGPLFDLEDEIIDQMGV KRVEKLTELLEEYSHTLWKLVKEGEKS >gi|297148814|gb|ACGQ02000002.1| GENE 680 767086 - 767721 919 211 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 5 208 3 205 211 240 58.0 1e-63 MTELKRPIVIGIAGGSGSGKTTIAHEVARLINDDDHIITLTQDSYYKDNTGIPMSERQKI NYDHPDAFDMPLLVAQINQLMHRKAVEMPVYDFTEHTRSSKTIHVEPADIIILEGILVLA DEDLRDLMDIKVYVDTDDDIRFIRRLERDLKERGRSLDSVIDQYLATVKPMYHQFIEPTK RYADIIVPEGGENNVAIDMLTTKMRSVLAND >gi|297148814|gb|ACGQ02000002.1| GENE 681 767774 - 768733 979 319 aa, chain - ## HITS:1 COG:lin1066 KEGG:ns NR:ns ## COG: lin1066 COG0463 # Protein_GI_number: 16800135 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Listeria innocua # 1 317 1 321 329 354 52.0 2e-97 MADKVLTIVVPCYDEQEVLHETSKLLKNIIDDLIEQNKISVNSKILFVNDGSKDKTWEII EQLQTQEKVFTGIRLSRNFGHQNAVMAGLSRAVWYSDMMITIDADLQDDIQKIYEMVDNF YQGFDIVYGVRNNRDTDTGFKRTTAEAYYWLMTKMGVNLIPDHADYRLMSKRAVEALLEY HEENLFLRGIVPELGFNTTKVYYKRKERFAGESHYPLKKMLSLAINGITSFTIAPIKVIL YLGILMVLYGGGALVLLGLTHHMSDYRSLINSLWLLGGIQLITLSIIGTYVGKVFNDVKK RPRFIIEDDTYSDSMKKVR >gi|297148814|gb|ACGQ02000002.1| GENE 682 768750 - 770993 2660 747 aa, chain - ## HITS:1 COG:BS_yycA KEGG:ns NR:ns ## COG: BS_yycA COG1807 # Protein_GI_number: 16081101 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family # Organism: Bacillus subtilis # 8 742 2 682 685 445 41.0 1e-124 MKQKMREKIKKIDYWLVAILILAAFLYGWNIWKAGYANQFYTAAIVSMSKSWKAFWYGSF DPASFITVDKPPVALWFMVICVKIFGFHSWSIVLSSVLFGIGSVFLMYKLIKPYFGRLAA NLGALFMTLTPIVVANSRTNNMDATLVFFLLLAGYVLHKAILKHKPLLVLVSFALIGISF NIKMLQAFMVLPAMYFFYFIASKQNWKKKTLWTIAATASLAVFTLAWPLAVDSTNKNNRP YIGSSSTNSVLNLAFGYNGTERLLGQSTGTGGAFPGMNSKNNSSKSGNAPSGTKTGSMKK PSGTNPASSGKRPRGQMGQGGPSAGGPGGTNSNKQMPGKNQAPSNSTKTKRPSGSMKRPS GKMGQGGPGRKGGGQGAGGGIFNVGTAGPFRIFQTALGQQVSWLLPLSLIGFVIAYFNEW RKKKKWLKFNKRQTHLLYWLGWLVPVYGFFSMAQFFHPYYMIMIAPPIAALAAIGIASFV ENRTKKKAAEKLEDINSETDGLTADNMAEIEKETKFASKANTYLMAFAVLATAGLQAWYV YEYYPWATYLLVIAGLLVSGYIVISAKKFNKKASLSAILVTLLLAPGFWSLTPTLSGESA AVPTTGPSLLSSNNVNDSFGSGSVNTKLISYLEKHNGSATYLFATMDSNTAAPYIIKTGK AVMTIGGYNGTDNAISLKKFKQLVKTGKVKYFYLTNDNGNNSSIVKWVKKYGTKVSASEY GGSSTSSQSMGRGPGNSTGTLYKLSIK >gi|297148814|gb|ACGQ02000002.1| GENE 683 771170 - 772381 830 403 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 7 403 4 400 402 347 45.0 3e-95 MVTNNIWKKNLFILSIAVFIAGIAFSEIMPFLPLYVASLGDFSHQELNFWSGFIYAGMYI VSAITSPLWGKLADKKGRKLMILRASFGMAIAIGAMGLVTNVYQLFALRCLQGLFAGFVS NSNALIATQTPKEKAGQAMGTMASSVTAGTLLGPLVGGFLASIFSYRITFFITGILLFTT FIMSFLWVKEDNFVAKNTAKLDKTKDVIKQFNSPILIFGLLITTMIIQAANNSINPIVSL FVKQLLHNHGNVVLISGIIAALPGIATFAVASKFGALGDKIGTHKIIIAGFIAASLFFFA TAFVQNTIELGILRFLVGFSDACLFPQVQTMLTKNSPAAITGRVFSWNQSAMYLGNIIGP LIGTTVSGLSNYSMVFLVTAVIVLFNLFLFKINVLNHLQKSKN >gi|297148814|gb|ACGQ02000002.1| GENE 684 772474 - 773913 1496 479 aa, chain + ## HITS:1 COG:SA2396 KEGG:ns NR:ns ## COG: SA2396 COG0531 # Protein_GI_number: 15928189 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 471 1 470 482 608 68.0 1e-174 MKNLFERLSLKEDPSVYEDKDSHLKRTLGVKEFLALGVGTIVSASIFTLPGVVAAKYAGP AVTISFLLAALVAGLVAFAYAEMSAAMPFAGSAYSWINVIFGEFWGWIAGWALLAEYFIA VAFVASGLSSNLQGLLSPMGFSLPKQLQAALGTDGGLFDFFACGVILLIAILLSRGVKEA ARVQNILVVLKVLAIIIFIAVGITALHPENYTPFIPAQKVNSDGTIFGGWIGIYEGVSTI FLSYIGFDSIAANSAEAKNPQKTMPRGIMGSLLIAVVLFVGVGLVLVGMFPYSEYANNAE PVGWALRQSGHPIIAVVVQAIAVVGMFTALIGMMLAGSRLVYSFGRDGMLPKWLGQLNKD KLPNHALIFLTVVSVVLGALLPFSFLAQMVSAGTLIAFMFVTLGIYKLRKREGKDIKDPS FKMPFYPVLPALAFLASLAVFLGLDTAAKLTAGAWFIIGLIIYFSYGIKHSSLAKSKNK >gi|297148814|gb|ACGQ02000002.1| GENE 685 773976 - 775454 1445 492 aa, chain - ## HITS:1 COG:ECs5137 KEGG:ns NR:ns ## COG: ECs5137 COG0531 # Protein_GI_number: 15834391 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 6 484 20 498 514 428 48.0 1e-119 MSDKQKKIGLFSLIMMIFSSIFGFANMPVAFLQMGYASIPWFIFAALLFFLPVSMMIAEY GAAFKDDHGGMYTWLKESIGEKWAFIGTFIWLSSWIVWLLSISSKVFIPFSALIFGKDMT QTWAFGPFNATQVVGILAILWMIFVTFAASHGAEVISKVSSVGGYFVTGMIFVFIIGSIV TLIAGHGHLSQELTTSSLFVSPNPAFQTPIATLSFVVYAIFAYAGMEALGGIIDSVKDPE KTFPKGMMISSLLIAAGYSVMVLLWGISVNWNEVLNSKSVNLGNITYVMMGHLGYYLGQT LGLSNSTSLLLQSIFIRFVGLGMFLAYVGSFFILIYSPIKSFILGSKHLWSEKMTKLNKV GVPAHAMWMQAILVCVLIFLISFGGGEAKTFYTILTDMSNVATSFPYLFLIAAFPLFKKK QKNLPFEVFKHKGFTNLVVAISFLIVLFGIIFTCVEPFLQGDLVTGFWTVIGPIFFGSLA YGIYARAEKKQK >gi|297148814|gb|ACGQ02000002.1| GENE 686 775579 - 776298 1052 239 aa, chain - ## HITS:1 COG:SPy1240 KEGG:ns NR:ns ## COG: SPy1240 COG0704 # Protein_GI_number: 15675200 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pyogenes M1 GAS # 5 216 6 217 217 167 40.0 2e-41 MGVMFDSELKKLKSRFVEMGLDTNEQLYQATKAFLDHDSVLAKKVINGDLAINDEEVSLE KRALKLIALQQPLANDFRTIISILKASNDVERLGDYAVHIGRATVQLKGNHHSPEIEQAI EEMSAVVREMLEKVLDAYVYTDEKAAYEVANQDLKVDIIYVREQKRLLEKMMSNGESIPS YEQYVSVIRTLERAGDHIVNLAEWVIYIASGKLVELNPGKTDPDLVEKGLKDTSKANKK >gi|297148814|gb|ACGQ02000002.1| GENE 687 776316 - 777068 350 250 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 246 2 240 245 139 34 3e-31 MDKIALELKNVGVAYGEKQVVKNVSMKFPKNQISALIGASGSGKSTLLRSINRMNDDIAT VTGKIMFEDVNINDPKINVYRLRRQIGMVFQQPTPFPMSIYDNVVYGLRLAGEKRKDILD QRVEESLKQAALWDEVKDSLNSNGNSLSGGQQQRLCIARTLATRPEIILMDEPTSALDPI STSQIEQTMLELRKDYTIIIVTHNMQQASRSSDWTAFMHQGELVEFNKTSEIFINPQKQQ TSDYLSGKFG >gi|297148814|gb|ACGQ02000002.1| GENE 688 777083 - 777964 1081 293 aa, chain - ## HITS:1 COG:lin2640 KEGG:ns NR:ns ## COG: lin2640 COG0581 # Protein_GI_number: 16801702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 1 291 1 291 294 298 53.0 8e-81 MNAEKRDHLATILISGGAIFAGILVILFLLYLIVEGLPQLSWHFLTSASDSFSTNGGIRD QLFNSFYLVVITLIISIPLSLGAAIYLSEYAKDNIFTRSLRLAIEVLSSLPSVVIGLFGY LIFVVNFKMGFSILAGALALTILNIPLLTTNAEQALRQIPYLQRQAGLGLGMTKWRVTKD IVIPAAFPSILTGAILASGRIFGEAAALIFTSGQSSIAVSYSNWNPFDPTSFLNLMRPAE TLAVNIWKLNTEGLVPNAQAISSGAVAVLILTILIFNVSARLFSAYISKKLGK >gi|297148814|gb|ACGQ02000002.1| GENE 689 777968 - 778867 752 299 aa, chain - ## HITS:1 COG:SPy1244 KEGG:ns NR:ns ## COG: SPy1244 COG0573 # Protein_GI_number: 15675204 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 9 298 10 305 311 278 57.0 1e-74 MKQNKKHLLLSPSKESYEEKWGKTISYGSIALIGIVVISIIIFLTGKGLALFLKDHASIW EFLTSNNWNPSHNSFGALPMIVTSFVVTLLAGIIAAPFALIIALAINEIFPKWFGKILQP IIELLVGVPSVVYGFAGLILITPVLRGFFGGSGFGILAAVVVLFMMILPTMVSMMVDSLR ATPKNFRTASYDLGATRWQTLHMVVIPSAKGGLLTAIIFGMTRAFGEALAVQMVIGNAAL MPKNLMSPAATLTSVLTTGMGNTIMGTSANDALWSLALVLLLMSLVFNILIKLINKKRG >gi|297148814|gb|ACGQ02000002.1| GENE 690 778872 - 779738 989 288 aa, chain - ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 30 283 43 296 302 271 56.0 9e-73 MNKKSIFGLVFIALMAFCWWDYEAHGVKQTSKVTNVGSTALQPLSESAAAGFLKKNPTIN LIVQGGGSGTGLSQVQNGTVEIGSSDVYAESKKGINAKKLTDHIVAISAIVPIVNKKLNI KNLTTQQLRDIFLGKITNWKQVGGPNLEITIINRASGSGTRAAFQELVLNGKDPVKAQEQ DSNGSVKQIVKATPGAISYVATSYVDNTIKTLTVDGIDASSKNVETNKYKLWSYEHMYTQ KQASAAAIKFIKYIQSKEVQNTLVKRAHYISIYDMKVVRDINGVVRKK >gi|297148814|gb|ACGQ02000002.1| GENE 691 779853 - 780569 521 238 aa, chain + ## HITS:1 COG:SA1516 KEGG:ns NR:ns ## COG: SA1516 COG0745 # Protein_GI_number: 15927271 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 143 237 134 228 234 107 53.0 1e-23 MTKKFLILSQNPDLTTKLKQLIKKKKENYRHLTTPTSLVVALNDDDDSYSGIFWDITKSN LDTTLATLLLIRNQVAGPIIIFTNSHSDRTLNKLYKAKVDFVADLEINEKLLLRIFEQRL WSYTFKIQPEEKKLAKRANEEIIETGNIKININKYSVFKNNEPVVLTPKEFQLLVYLAQN KGNVISREQLLQKIWGYDLLGSSRIVDIHISHLRDKLEDDSSHPQHILTKRGFGYRFI >gi|297148814|gb|ACGQ02000002.1| GENE 692 780755 - 782017 1076 420 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 7 420 5 427 447 419 50 1e-115 MAQDVVLDVEEKPGFGQWIGLSMQHMFSMFGSTVLVPILVGLDPSIALFSSGVGTLLHLL ITHHKIPAYMGSSFAFITPMIALMKTAGYPAIAQGVIASGLVYLIVALIVAFAGSDWIDR ILPPIVVGPIVMVIGLSLAGTAATDATMNNSKYDLRYFAVAMLTLLVTIVFNMYFKGFWG LIPILLGIVSGYIIACLFGIVDFSKVMSASWISMPKFEIPFVSYSPKMYWGAILSMAPIA FVTMTEHMGHIMVLNELTGRDFFKDPGLKKTLAGDGVASVAAGLLGGPSVTSYGENIGVM AITRVHSVYVLMGAAVFAILFSFVGKLSALIESIPSPVIGGISFLLFGVIAASGLKVIVE KKIDFNKKRNLMIASVILVIGIGNAYLQLGNFQFSGVAVATILGIILNLVLPQEAASEKE >gi|297148814|gb|ACGQ02000002.1| GENE 693 782149 - 783414 1428 421 aa, chain + ## HITS:1 COG:BS_gltT KEGG:ns NR:ns ## COG: BS_gltT COG1301 # Protein_GI_number: 16078086 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Bacillus subtilis # 8 421 5 418 429 384 51.0 1e-106 MKHSRVPRISLGTQIIIGLVLGIIVGAATYHNQVAISTMSGLGTIFLRLIQMIVMPIVVS CLTVGIANIGDLRKLGRIGGKTLLYFEVLTTIAIILGLIVANLTRPGDFINIHSLQGGDI SKYLATAKTASKTGIWDTIFAVIPTNIFKSMSEGDMMPVIFFSVFFGLGIAAIGEKGKII TQFLNAVSGVMFKVTNWVMKFAPLGVFGLIGMTIAQMGLSALLPLGYFILVAYLTMIFFC IVILGLVAYIFKLDYWETMKKIWPEILLAFSTASSEATLPRLMKKMQDMGVEKGVASFVI PTGYTFNLDGSAIYQSLAAIFLAQAYGLHLTWEHQFTLLVVLMITSKGMAGVPGASFVVL LASVATIGVPIAGLTFIAGIDRFVDMGRTSVNVVGNTFASLVIGESEKALDRKKYEQYLN K >gi|297148814|gb|ACGQ02000002.1| GENE 694 783477 - 784490 1258 337 aa, chain - ## HITS:1 COG:SPBC1683.02 KEGG:ns NR:ns ## COG: SPBC1683.02 COG1816 # Protein_GI_number: 19111850 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Schizosaccharomyces pombe # 1 333 1 334 339 313 47.0 3e-85 MVDLTRDFLEKMPKAELHVHIEGTLEPKLKLELAKRNHVELAQKTIEEVKATLQYDNLAD FLAVYYEAMQVLQTEQDFYDLAMAYLKKAAKNNVRHVEIFFDPQAHESRGISFETVLNGL YQATVDARALNVDAHLVMCFLRDYSRNNAQKTLEKALKHQDKILGIGLDSDEHNNPPMKF YYQFAKASEAGFHITAHADVDQVDSINHIKELLEVINVERIDHGTNIVENEDLVSFAAKQ KVGFTSCPLSNGFLSPDLKGNEVKYLLEHDVRVCLNSDDPAYFGGYITDNFEAEVKKYNL SADEVKALAANSFKMSWISEEQKQFYLEELDRYFEEN >gi|297148814|gb|ACGQ02000002.1| GENE 695 784677 - 785816 1581 379 aa, chain + ## HITS:1 COG:SPy2206_3 KEGG:ns NR:ns ## COG: SPy2206_3 COG0516 # Protein_GI_number: 15675939 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pyogenes M1 GAS # 100 377 8 283 286 400 78.0 1e-111 MSNWNNKFVKEGLTFDDVLLIPAESHVLPNDVDLKVELTSSLKLNLPFISAGMDTVTEHE MAIAMAQAGGLGVIHKNMTITNQANEVKLVKNTEVTSEKAAVDNEHRLLVAAAVGVTTDT FERASALIDAGANAIVIDTAHGHSAGVLRKISEIRAKFPNINLIAGNVATAAGTRALYDA GVDVVKVGIGPGSICTTRVVAGVGVPQITAIYDAANVAREYGKTIIADGGIKYSGDIVKA LAAGGNAVMLGSMFSGTHETPGQIFENQGQKFKAYRGMGSVGAMSQAHGSSDRYFQGGVN EANKLVPEGVEACVAYKGYVKDVIFQLIGGLRAGMGYVGAPDLAALIENAQFVRITNAGL VESHPHDVQITKQAPNYQG >gi|297148814|gb|ACGQ02000002.1| GENE 696 785889 - 787208 1138 439 aa, chain + ## HITS:1 COG:PH1159 KEGG:ns NR:ns ## COG: PH1159 COG1457 # Protein_GI_number: 14590986 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Pyrococcus horikoshii # 11 371 8 344 422 135 26.0 1e-31 MNHESFQIKEKDRTTNSWDMFATWVGANANNGTWFVGGVLAACGFALATKILVLSSALSY IFLSLVGYIGYKTGLSTMTIARASFGERGSYLPSLVNITQFIGWTAVNTFIAAQSVSLLL KDLLNMHNETLGLTIGIIVMSILHILSVASGSKSIQLIERIGVALVFIFVIWESIAVFKA VSLNQIISWKVPNSSKMALGSAIDYVAAFNLAWVTAGADFTRFTKKKSNSTIAPFWGALT GVIWFAVIGLISTISIAITSGVYNANNSDPSTIASKLGLGIVALLVIILTSMTANAVNLL AAGSALSNIFPKIRLKHSLWIVVSAATLVTFIPMFVGSFLETFESFLDYVGMVLGPTIAI ICTDYYFIKKRNYEIPQFGKTFGTYWYKSGINWKAIIVFILGIIIFLTGKNIQLLSNTIG ITFLDMTICSLLYWILMKK >gi|297148814|gb|ACGQ02000002.1| GENE 697 787252 - 787773 577 173 aa, chain - ## HITS:1 COG:SP0580 KEGG:ns NR:ns ## COG: SP0580 COG0454 # Protein_GI_number: 15900490 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 7 173 2 168 169 129 40.0 2e-30 MSQKVSIRPIQTDEIDQLIKISKQCFHQTFDPWRALEDVNTYIQRAYTREKLLSELKTTT SKMFFAFVDNQIVGYLKVNWDSSQTENNWPEAFEIQRIYVLKQFQGLHVGSALMHKAISM AKEEHFHRVWLGVWEHNDKAQKFYHYFGFKIEDEHTFMMGDTAQRDLMMVKDI >gi|297148814|gb|ACGQ02000002.1| GENE 698 787868 - 794686 5880 2272 aa, chain - ## HITS:1 COG:no KEGG:LJ1128 NR:ns ## KEGG: LJ1128 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 991 1868 804 1697 4734 174 29.0 3e-41 MFSKKNKKQYDLKHADGRQHWSLRKTTLGMASVLLSTTIYLGSTNVLVHADTTSDSQTSQ ATTSSSSSDTSSSSSQTSSSESSSATSASSTSEQTNSTTSSNSEASSSASSSESSTSSVS SSSSSSSSDSNENETNTSSNVVSTSSSSSADTNDSTTDQTSSSADGSSSSNQSLYTDEAS ATSAANKITEDNKTTTTTTTISTAYDNKSTASTQKSSFDFSQYSGLPEYYMWMSYINSNK DIKANASSNVVISDPVYDATTNTVTYTIHFNPSNGIVTTSGSTLTDASAQYAIEISKNLK VVSISYGYNGNMTDGTSTYTSGGGTLSSSSTNGTATKMIVSNTTYANTSTTGLSSSNAIS SVSSDIGQTIIFSPNTTLYYQASNSKGLDVTIVATVYSSVSTSFTGVNAIESYIPKSLWN NNSGIRDMLGDTPVVMSTYKAVTSSTIAEGQAASNTTTTTMTNATGVASTSIPVSVVFDN SSSESNITSVDYTLTKSASSLKEANSTAYVNATDDSTSGSLSASNNYTQNYYDVEAIPSG TTVSSSALASDLLTSDALTVTDVKINSTSGTYSYLVSQTNSGIEIHVIDKTDLETAVNDQ NDVQKTSAYYNASDDKKQAYDDAVAAGQTVLNNDSATQSEVDSATTAINSAKSALDGETT DKNALETAVNDQSDVQKTSAYYNASDDKKQAYDDAVSAGQTVLNDDSATQSEVDSATSAI DNAKSALDGQATDKTALETAVNDQNDVQKTSAYYNASDDKKQAYDDAVAAGQTVLNNDSA TQSEVDSATSAINNAKSALDGQATDKTALETAVNEQSTVESTPAYYNASDDKKQAYDDAV SAGQKVLNNDSATQSEADSATTTINSAKAALDGETTDKRALETAVNDQSNVQKTSAYYNA SDEKKQAYDDAVAAGQTVLNNDSATQSEVDSATTAINNAKSALDGETTDKSALETAVNDQ SDVQKTSAYYNASDDKKQAYDDAVSAGQTVLNNDSATQSEVDSATTAINNAKSALDGETT DKSALETAVNEQSTVESTSAYYNASDDKKQAYDDAVSAGQTVLNNDSATQSEVDSATSAI NNAKSALDGETTDKSALETAVNDQSDVQKTSAYYNASDDKKQAYDDAVSAGQKVLNNDSA TQSEVDSATSAINNAKSALDGETTDKSALETAVNDQSDVQKTSAYYNASDDKKQAYDDAV SAGQKVLNNDSATQSEVDSATTAIDNAKSALDGETTDKSALETAVNDQSDVQKTSAYYNA SDDKKQAYDDAVSAGQKVLNNDSATQSEVDSATTAISNAKSALDGETTDKSALETAVNDQ NDVQKTSAYYNASDDKKQAYDDAVSAGQKVLNNDSATQSEVDSATSAINNAKSALDGETT DKSALETAVNDQSDVQKTSAYYNASDDKKQAYDDAVSAGQKVLNNDSATQSEVDSATTAI DNAKAALDGQATETATSSTGTSDTTSSTTGSTTESSVDKSALETAVNEQSTVESTSAYYN ASDDKKQAYNDAVSAGQTVLNDDSATQSEVDSATTAINNAKAALDGQATETDTSSTGASD TTSSTTGSTTENSVDKSGLETAVNEQSTVEATDAYKNASNDKKQAYDDAVSAGQTVLNDD SATQSEVDSATTAINNAKAALDGQATETDTSSTGASDTTSSTTGSTTENSVDKSGLEKAV NEQSTVESTDPYKNASDDKKQAYDDAVSAGQKVLNNDSATQSEVDSATTAINNAKSALDG QATDTSSTGASDTTSSTTGSTTENSVDKSGLETAVNEQSTVEATDAYKNASNDKKQAYDD AVSAGQKVLNNDSATQSEVDSATTAIDNAKAALDGQATETDTSSTGASDTTSSTPGTTTE SSVDKSALETAVNEQSDVQKTSAYYNASDDKKQAYDDAVAAGQTVLNNDSATQSEVDSAT SAIDNAKAALDGQSSSDKPATQSETDGSTESVDKTNLQKDVDRAHEVQTSTNPNEYLYYA SASDEARKAYGDAVAKGEQVLSDTNATQEEVDAADKAIRDAEQRLIDSAEKAQNNVNLPE RVKVEKMGQPTSDELSQIKKNIEAANPNTTVTVYSDGSATIKFSDGSSAELTKEDTTIQT DAIENNGDRSSSENTGNSNFENSDSSIDKSSLEAAVNEKSSVESTDAYKNASDDKKQAYD DAVSAGQKVLNDNSATQNEVDQALQTIKNAKAALDDNTEINSKATANSKSSSVSSTSSKE KTPASNSSENRVATDANKLPQTGAQVGEVSLIGLILALLGLLGFRRKKNNEE >gi|297148814|gb|ACGQ02000002.1| GENE 699 794935 - 796404 1397 489 aa, chain - ## HITS:1 COG:yjeM KEGG:ns NR:ns ## COG: yjeM COG0531 # Protein_GI_number: 16131981 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 479 15 498 514 394 43.0 1e-109 MSEKKKKITLVGLILMIFSSIYGYSNSLTAFYQMGYASIIWYVLTAVLFFLPSALMFAEY GASFKAAKGGIFSWLRGSIGEKPAFVGTFIWLAAWVIWLVSSTQFFLVSVATAIFGKDTT TSWHLFGLSSDQTLGILEIIFLVLVCAIASKGINGIVRISSICGVATLGISVVFIVVSLI ILMMQHGQLAEPLTAASLVKSPNSSFTSPFAVVSFIVYALFAYGGLETMAGVIDNVEKPE KTFPRGLIWAMIMMTVLYILTIFLCGVTANWSEILGQKNVNLANVEYVLINNMGLVFGKA FGLGHAQALILGKVFSQITAISDVLGGLGAAFVMLYSPIKSFIEGCDKRLLPKKLTTLNK YDMPEFAMWCEVAFVSLIILLISFGGSSASAFYTVLTDMMNVSSAAPYLFLIGAFPFFKM KKDLDRPFVFYRSQKCVWIVIASGIIFTIIEPIVEGDPATAFWTAFGPVFFGVVAWIFYS RAEKKIKDL >gi|297148814|gb|ACGQ02000002.1| GENE 700 796429 - 796758 195 109 aa, chain - ## HITS:1 COG:no KEGG:lhv_1088 NR:ns ## KEGG: lhv_1088 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 7 69 354 416 425 98 77.0 7e-20 MRITYCKTLLTFKHNLRAVLNGARFSYSNGCLEGFNSKIKQIERTAYGYSNYIYLLTRIR LEKTGLKKKNQAIYILLDSLNHSISTVFDKEPFFHTLISIKMYSVVYRF >gi|297148814|gb|ACGQ02000002.1| GENE 701 796969 - 797538 753 189 aa, chain - ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 8 184 5 179 186 94 33.0 1e-19 MFKKKLNWDIQAIILVSLVGLIMGVIYTYGFNLIYNLTKAALLPTGYAQLTDTLMSGLWY MAAPLAVYFVPVKGSATLGETLAAFGEMLVGGQWGAITILAGFVQGLGNEVGFLTSKSRK HFTWSAVLLGATGAHFTGFFLTYVLYGWYKYNLTLQILMFITGWLSSLIFDGVLIKLICS RFERAFFKK >gi|297148814|gb|ACGQ02000002.1| GENE 702 797732 - 798814 1316 360 aa, chain - ## HITS:1 COG:SA2244 KEGG:ns NR:ns ## COG: SA2244 COG1363 # Protein_GI_number: 15928034 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Staphylococcus aureus N315 # 7 352 5 351 358 182 31.0 1e-45 MDKKDEIRMLKNFSDANATSGFEEEFVKLFTNTIKKYADIEVDGMLNVYANKKENKAGRL TVQLDAHSDAVGFITQAVRPNGLIKFVPLGGWSRVNIPALKVKIRNKNGEYISGVVATKP PHFMNASERNKLPEVADLSIDVGSSSRAETINDYQIDTGCPIFVDVKCEYNEKTGLFFGK DFDDRFGAAAMATVLEELQGENLDVNVTAALSSQEEVGLRGAYVTARKVRPDLCIVLESC PADDTFEPDWLSQTGLKRGVMLRDMDVTFLPNPKFQQYACDLATKNNIPFTRSVRTGGGQ DGAAIYYENGAPTIVIGIPVRYEHSPYCFSSYQDYRASVDLTKAILKDMTAEKLASFKTF >gi|297148814|gb|ACGQ02000002.1| GENE 703 798925 - 800286 1312 453 aa, chain + ## HITS:1 COG:YPO2459 KEGG:ns NR:ns ## COG: YPO2459 COG0477 # Protein_GI_number: 16122680 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 51 443 35 428 452 196 35.0 5e-50 MGEQNQQSKTEIKRKQKKNIFYKRKSYKKAPFSDVHAQLYWALVLGQIACAYALGIAGSA FNHAKAFLSINDTWLGLLGAGALIGLAGSFIMGRISDRFGRKHLLMANMYIYSLLSILQF FTSNLFLLFLLRVGIGLMIAIDYTVGNSILVEWMPTKDGAKKQSNLLLYWSYGFGLSFLA SQFISDWRFMLCSSAVLGLIAAIYRSIVQIPHSPSWLASQGEHRQAQKVIQKNLGKKWGL PKSLLRVKKKTDASPLELFGKKYWRATLAGTAFYATQAFAFFGISIFLPILLKNMHMNNA FLSGLLYNLAIIVGTAIGIWLFNKMSRRSFLIVTFSISIICLFILALFPQLPSILTLIIF TIFSIVLSISLLLDFTYTTELFDLRIRATGVGFVITMSRVGAAAGTFLLPIIVNLAGAYI TLCVCGVVLLIGTIICIFVAPETNPQFIKKENK >gi|297148814|gb|ACGQ02000002.1| GENE 704 800409 - 801704 1150 431 aa, chain + ## HITS:1 COG:YPO2459 KEGG:ns NR:ns ## COG: YPO2459 COG0477 # Protein_GI_number: 16122680 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 9 423 13 428 452 185 31.0 2e-46 MTQTKNYKDAPFSKVHSQIYWAMNIGQIACAYALNVAGIAFGNAQQELGINNFILGLLGA ASLIGLIGSFFMGQLADKFGRKHMLMSNMYIFTILSLLQYFTTNVWILLVLRLLIGLMIA VDYTVGNSLMVEWLPTKDAAAKQSHLLFYWTLGLLIAYVTGHYISNWKLLLASSAVFGLI AALNRSFIRLPASPSWLASHNQNESATELIHERLGEEWGLPKHLVELEEDPSINWMTLFS KNYWRQTLAGTAFYTTQSFAFFGINIFLPILLKSMDVTDTYLAGLFYNIATVAGPAIGIY FFNKYRRRSFLIVTFSISSLCLFILAFGKSINSIVEITIFTLLAVILTASVLLDFPYTSE LFDIKLRGTGVGFVIAMSRIGAALGTFLLPVIVSAYGSYVTMAICGVVLLLGTVICYFVA PETNPRYINKD >gi|297148814|gb|ACGQ02000002.1| GENE 705 801956 - 802201 142 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|260661007|ref|ZP_05861922.1| ## NR: gi|260661007|ref|ZP_05861922.1| predicted protein [Lactobacillus jensenii 115-3-CHN] # 1 76 1 76 233 127 100.0 3e-28 MKRIFYIDFLRIISMLGVILLHASATKLRMPIDFSWHLVNFLTSFATCSVPIFFMISGSL LLNSDSTANINILWKKGYLNY >gi|297148814|gb|ACGQ02000002.1| GENE 706 802411 - 803049 245 212 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|297206400|ref|ZP_06923795.1| ## NR: gi|297206400|ref|ZP_06923795.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] # 1 212 80 291 291 308 99.0 2e-82 MLFIWLIFVIILPTFNNILPFPLKLIFSTSQDWKIIGGYAGYFLLGYYLSKIDTQKISYK RLLIVFLSIIFVIALGTYFFTLKNRGAYDESFKLYTSLFVCILASTFFLLCQKAQEKYPI KLIKIFEFIVPSCYGVYLIHNLLILFFNRNIPYFIENKGTLAVFLLFILVSLTSILIIYL LGLIPTVGKYFTGVNQKVFYTKLNFLVKKNSN >gi|297148814|gb|ACGQ02000002.1| GENE 707 803089 - 803985 1060 298 aa, chain - ## HITS:1 COG:L119891_2 KEGG:ns NR:ns ## COG: L119891_2 COG0577 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 8 298 80 374 374 148 39.0 2e-35 MLMLVLIKKNTNITTVTNWTSVLNASSIKKGRMPKTGEVVLDKKNIAKSLTNNPNSLIGK TITLTYAGLNKLGQKATIMIKVKVVGLTESSGSSQINAIGGNTIENALKAANMSTDVAAL GVSASSMNTAKKVAKSINKLKISGKLRFTATAVSSMLDRIETYISLITNVLAGIAGISLL VSALMIIVTMYMSVSDRTKEIGILRALGESKRDIRRLFTSESILLGIFSATFATVIALAV QSLANSALSQIAHYSFIQISFSNIISAFIISIVISLLAAILPARHAAGLNPIDALAGE >gi|297148814|gb|ACGQ02000002.1| GENE 708 803951 - 805060 944 369 aa, chain - ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 290 1 290 290 367 64.0 1e-101 MAFLELKNIYKSYFLGKEEFPVLKGINLDFELGDFVSILGESGGGKSTLMNIIGGLDRAF SGEVLLAGQKLNHSKEASLNKYRRETIGYIYQSYNLIPHLNVLDNVALALDMTTLTANER KKRALDLLEQVGLQDHVKKYPKQLSGGQKQRVAIARALASDPQVIIADEPTGALDSQNTE EVLALLNKIAAEGRLVITVTHSQHVADSGTRIVRLADGKIISDQRLKSAYNAKVESKLQS RKLPLVTSMRNAFKHFKYHFKRNLLIILGTAVGLFSVITFNGLGTGVKGYVNEQINSLVN PKQVLVTPYVKSSNNNQQNSYVNLTAGDKTVNTFSNKDISALKKVKNVSKVEKIHTLTNV DVSLNKKKH >gi|297148814|gb|ACGQ02000002.1| GENE 709 805211 - 805789 510 192 aa, chain + ## HITS:1 COG:no KEGG:LAF_1631 NR:ns ## KEGG: LAF_1631 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 1 185 44 232 232 122 38.0 6e-27 MQREEKKELNRKKIITTAKTLFLTKGIYATNVRDISKKSGISYVTMYKYFSDKNELVNLV CQELIDEAMANAYSKLNNDTLTFFEKLQQINFEAEFKQKYGPKVWVDFCSYTNNNPELTS YIEKKVNDSWLMIIRVGRKDKFIQASASDEQICNFLSLVLKLDHKEFKENIDAYWELFWY GLAGKEGHIKNK >gi|297148814|gb|ACGQ02000002.1| GENE 710 805877 - 806668 855 263 aa, chain + ## HITS:1 COG:CAC3325 KEGG:ns NR:ns ## COG: CAC3325 COG0834 # Protein_GI_number: 15896568 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Clostridium acetobutylicum # 14 262 14 269 269 166 41.0 5e-41 MRWFKKISLFAGLIAISLGLVACSNQKSTNSEVLNKGTLTVGLEGTYAPYSYRENGKLKG FEVDLAKAVAKKAGYKIKFVPTKWDSLIAGLGAKKFDIVINDIAMTPERKKAYTFSTPYI YSKSALIMKKTNNTIKSAKDIKGLKIAAATGTANADNVKKFGGQNVSSTDFSTAMELIRQ NRVVAAMNSKEAFLYYQKSQHVTDLKYVEIPTNQIPAQEIGIMMSKGNSSLQKKINKALN DLREDGTLSQLSKKYFDGDITKK >gi|297148814|gb|ACGQ02000002.1| GENE 711 806775 - 813728 9512 2317 aa, chain - ## HITS:1 COG:no KEGG:Apre_1411 NR:ns ## KEGG: Apre_1411 # Name: not_defined # Def: sugar-binding domain protein # Organism: A.prevotii # Pathway: not_defined # 55 780 1253 2000 2126 176 29.0 1e-41 MKIEWGELDTQTTGQKTAKLNITYNGSGAWGMRGEGGATYTRTLDVPVAIYSVKDPVKTP VPKAYQTDLTTEYKEKIIAAIKEANPNAQDVTVDSKGNATVSFPGETKAEVTSDRTIKDV DKSELDAAIKDGTTTKTQVVYINADSSKKTAYDQALTDGKSLYDSDTASQDEIDSQVSQI KVAKEALNGKETNKTGLEEAIKKAEEEKGKESYGNASNAAKSALDLAIQKAKDVLNDENA SQEDVDKAISDLNDAISGLSNSQAKDVQAPTKTPVPEAYRDNLNDEYKNRIVEAVKEANE NADLVVVDNLGNVVITFKDGSIAKLSKDETVKDVDKTALNSALSEYSDTIRTPEYYNASQ DAKDNYDKTKADGQEASASTTASQEMVDTATTAITNAKKALDGKVTDKQQLQDLYAKGNS TKESQVYTNGSTAGQNALKEALATAQQVIDNDQATQEEVNVAVKQLQDALDLLAKSQAFF ANNPEKVAIPKAYYQKQLTRNLKSKVENEIRQANPDVVDTVTVNDPGAANVVFKDGSKKY FENTVTTKEVDTSRLKQLTDEQESIHKTGLYINASEGAQSRYDSTIGDGLDGLENPTLTQ DQVDTLADAIENAKSMLDGYETNKQALKELLDEAPSYKLTEPYTTASDEARQAYDQAINA GSGVYNEDTFTQKEVDTMVQIIEKAKRDLQESSDEAASKINLSINKTPVGDKESLTEGEK DKVKAEVQKVNTDPDILEITTNNDGSVNVKFKDGSSVPIDSRYTIKETDKTALKNAIDLE DYVKTQQTVNYNGQDIKIYESATAVARKEYDDAIEAGKVVYTNDKATQDEIDAATKRIND AVKGLVSAATNAQVNFNYGLGLTPVINLDNVSDSEKTIIKSKIAEGNKGDDGQTLVDIDA TTIDAEGSAVVAMKDGSKVHVDKKFTVRAVNKSVLQKDIEIANDLKGNKTEYDKATDAAR ANFEEKLTNANAANDNPTSQEDVDKAASELEQAMSDLIKSIKAASSKVKQPTTQIAVGRD RELYTKEEDNEKGKIEAAVREVNPNASSVESDVYGNVTVHLSDGTTVVIDKSKTTKDTTK DALKDAIANAKNEEENGNIYKKASTQSKQDFDTALTKAQEVFDSTKSSQKEIDDATNSLK TAFETMADSVKTAQSKVNKDVERTPVGNKTNITEKESLSIHDKVLAKNPNTTVTVDNEGN ATVEFSDGSKGFVSNDYTTTNVDKSQLQASFDQATGIKDTDTVNNASTNAKEKFNEAYNQ AKETLAKATATQDDVNNTKSALDEAMQNLSNSLASAIIAPERVAVPKGIQGNITEESGYV AKIQDAIKVANEGKIEQVAVASDGSAIITFTDGSIAKLTSGQTIKDVDKSALVNAVNEAP SVKGTAKYYNADAALQTAYTDQITVGQTMLDRDSDSQEAINEQVSNIQTAKNNLNGIDTN KEQLRILYGTVDSVKAGSTYANASAKAKTDLDSAANRAKAVLDNDSSTQKEVDDAYAALD EAIKALSDSQATKMGAVTPVEVPKSIQSNLTDDFKSEIRDAVKSADENVDIVKVDNEGNV TVIMKDGSTTSLDKSKTVTDVDKSALRPLVEEADTVKASAKYYNADDELKDAYDTAISHG NDILTSDSATKEDVAQAVTDITKAKNALDGAETNKDGLRATYTNATELKDGDSYKLGTAA AKEAFDKAYSDADSILKKDNATQKEVNDANDALQKAMAGFGDSEASKIIMPEKTVVPEYY QDNLEDSTNPYAQKIIDAIKAKNPKATDDITFSGDEAVVKFEDGSQIGVKKINLISNVSF DTLKPLVDEANDVMESVKYKNADRELQTAYITTVNKGSKALGDTKIDQSSVDTLVTEISN AKNALNGQETDKSELEALVKEAPEVKEANKNASTKAKEAYDEAIQAGQDVLDNSDATQSE VNEAKEKIEEAKRNLANEIKTLAEKLNVEVTKTEVGDKENITESEKSEITKNVTDAVQAK NPNDKFEVSVDNQGNATVTFEDGSVGQITNDKTTKAVDKTGLQSDVNKQAAVHKTSKYYN ASEETKQAYDEAIQAGQVVLDNEKATKQAVTDARSEIQKALDALDGEETNFDKLIAAIAK AEEAKTSEKYVYESDANKEAFDEMLDKAKAEMGQTNVSQKTVDQITDELIKAINSLTGVK PAPVEPEVVPTKSEVNKSELQSQLDKGKEVQNSPQYQSATSESKAKLETALDNGQKIYDD KASTQEQVNEASQSIETALANLTSTVEKPVSTPQTPTKSVVITKADSRLNKAKSNTLPKQ AKLPQTGETTKANTWLGFGVIGLLLAVLGIKKKKEDE >gi|297148814|gb|ACGQ02000002.1| GENE 712 814270 - 814830 151 186 aa, chain + ## HITS:1 COG:no KEGG:lhv_1083 NR:ns ## KEGG: lhv_1083 # Name: not_defined # Def: putative transposase # Organism: L.helveticus # Pathway: not_defined # 1 186 100 285 285 368 96.0 1e-101 MNKKVDLNGHFLIIDSFPVPVCQPIRNYRAKIFRGYANIGYKATKKIYFYGFKVHAIVSD DGYILDYVVTKASVHDAKETVELLENAHPSNYYLLGDEGYLGKELHQQLKQMGYELWTPY RKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAY CLERFN >gi|297148814|gb|ACGQ02000002.1| GENE 713 814813 - 815358 498 181 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282932375|ref|ZP_06337806.1| ## NR: gi|282932375|ref|ZP_06337806.1| putative surface anchor protein [Lactobacillus jensenii 208-1] # 1 173 1 173 2755 318 100.0 1e-85 MKFSNIRKRLTLKSAKQRQNWSFRKTTIGLCSVLLSTTLLWGITNIQHNSVVVRAENTAN SEQSLFTSQQNISGAQGITSYVGISSADGSSFTLNDGSAISITYPTLDATSSRTDYLPLS DITLSPYGTKNFTFYIYSKQDYGRTLSQLNYNITQGTNTVIVASYSSKLGNGIRVVLVKS F >gi|297148814|gb|ACGQ02000002.1| GENE 714 815705 - 816382 649 225 aa, chain + ## HITS:1 COG:mll3859 KEGG:ns NR:ns ## COG: mll3859 COG0765 # Protein_GI_number: 13473305 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Mesorhizobium loti # 3 222 6 215 226 197 51.0 1e-50 MWEIIKTSVPEILIAGLKYTIPIAIISFILGIIIASITALIRMSTPKGNPLKKSLWQLLK GFFTFYVWIFRSTPLLVQLFIVFYGLPSIGIQLGAWTAGILTFSLNTGAYASETIRASIS SVPQDQWEAAYSIGLTYRKVLSRVIFPQAVRIAIPPLSNSFIGLVKDTSLASSITLVEMF MVSQEIASHNYQPMIMYSIVAIIYAIFCSLLSLLQLYLERRFEVK >gi|297148814|gb|ACGQ02000002.1| GENE 715 816382 - 817116 565 244 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 240 1 240 245 222 46 3e-56 MLKLTNINKSYENNKILDNINVVFPKNKTTVILGPSGAGKSTLLRSINLLDQPENGTIEL DDIKVNYNENLSNNEILQLRRKSAMVFQSWSLFPHMTILENIIEGPTQAKNENKDQAIQE GKKLLAEVGLEGYENRYPSELSGGQQQRVSIARALALKPSYILFDEPTSALDPELEAQIL HLMQKLALEGKSMIVVTHNMDFARKVADKVIFLEKGHVIFDGECKDFFNNNNQRIQDFLN AMKF >gi|297148814|gb|ACGQ02000002.1| GENE 716 817158 - 817790 579 210 aa, chain - ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 3 210 4 211 211 227 51.0 1e-59 MDYTTVTLKFAIGMLCLILQINLFGKKNLAPSSPIDQIQNFVLGGIIGGIIYNESITVIQ FVIILLIWTLIVFVIYVLKARLRLARILIDGQPFNIIKNGQIQVKTCVKNGITANEIMMR LRANGINDTSQVKSAFVDANGQFVVIENNESNVKFPVINDGQVNHDVLDLIHKDEKWLNE QLKQKGINNAVDVYLAEYIRGRLRIVGYPK >gi|297148814|gb|ACGQ02000002.1| GENE 717 817800 - 818243 460 147 aa, chain - ## HITS:1 COG:no KEGG:LSL_1087 NR:ns ## KEGG: LSL_1087 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 146 1 146 147 100 39.0 1e-20 MDFYSLDYIQNQESFNSTLIMGSIVVSIILLIWAVIFYFRHNYDIKYRDFAIIFGLFISI QVFRQVENYNQSRQQGNKTSQMAPFIKSVARENNVKTKNVYVNSSQLADGIIVKIQDRFY RVTLSSDAASYSLVRTHLVSKQVKYHD >gi|297148814|gb|ACGQ02000002.1| GENE 718 818304 - 818825 458 173 aa, chain - ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 11 173 9 171 172 100 36.0 2e-21 MNFEIIPVEKSERALHYLVNLSCDAFKATFSPYYDKGEIEAYLDLAYNPAILRKELSSES SRFYFIEVDGEKAGYFKVNWDKSVTNEKYLHDFELQRLYLLPKYQKQCLGQKAMDFVLNL AQKLEKQTVWLEVWEGNKVALNFFKENNFVAVSNNAFPLGHYAQTVKVLKKDL >gi|297148814|gb|ACGQ02000002.1| GENE 719 818931 - 819488 688 185 aa, chain - ## HITS:1 COG:SP2234 KEGG:ns NR:ns ## COG: SP2234 COG1309 # Protein_GI_number: 15902037 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 7 171 8 175 180 94 32.0 1e-19 MTDARVVKTKQKLYRAMGELLDEKSFDEITVIDLAQQAHTTRKTFYSHYQDKIELIEEYE NQIFDELSKLQAHYKFLDKNYITTYFRHIGNQDLLLKGLLSYNGSLEIQNLFKEGMYQEA QKLLSLKIKDKTKLNYAALIFANGLFGVTQYWLMNGKKESPEEMADIIIHLGLLPGAIFE ENHRN >gi|297148814|gb|ACGQ02000002.1| GENE 720 819586 - 820254 518 222 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256851593|ref|ZP_05556982.1| ## NR: gi|256851593|ref|ZP_05556982.1| predicted protein [Lactobacillus jensenii 27-2-CHN] # 1 222 9 230 230 335 100.0 1e-90 MKKAKFKLDKTFIIGLLAIVVVLVIGTVYIVKTNDISSENSKTLQTTKVSNNTKKVAPSA KDNVKNQHLIINVDDNVENVTINNVNTLVNKNNTDLKKLNCYQFGVCVVSFVSKSIHNPN YLALWNNALKNKQFNINLVSSSNGISAFMNKGTVYKVKVDDREVYYSIDKNKNVHFYDGS NMSSLIEIGSAKLGQIIFVVNRPQNQSEVKHVIKYVNVNSTN >gi|297148814|gb|ACGQ02000002.1| GENE 721 820471 - 821826 929 451 aa, chain + ## HITS:1 COG:SPCC1672.03c KEGG:ns NR:ns ## COG: SPCC1672.03c COG0402 # Protein_GI_number: 19075374 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Schizosaccharomyces pombe # 8 446 10 444 527 248 34.0 1e-65 MNINKYILANICHPPEYGKVEFTNHALIGLDRSGIIQFLLKPTDATYQEKLKQAKKEERL IAFDDSKLILPGFIDLHIHAPQWPQAGVALDSPLYDWLDNCTFPLESKYSNPEFSKEVYN NLVDTLLAHGTTTALYFASANKNTSLSLAKICAKKGQRAFVGKVVMDNPDQTPDYYRDES SQAALLETEDFCKEVEKLAQNTLQGIYPVITPRFIPSCTDSTLKNLGELAQTHNYYVQSH CSESDWEDSYVFNRFGKSDAEMLKSFGLLGPRSIMAHCVKLDTTGANIFAETGTSIAHCP ISNAYFANSVLPVAKFQRLGINIGLGSDISGGFSPSIYDNLRQAVIVSRLLEDGVDSSLP SEKRGKANSRITLAKAFWHATVGGGQALKLKLGLFKKDYSFDAQVIDLSTLPTYGGFDNQ DSLWQKALYLTNSPSIKAVFVQGKKVYQNQL >gi|297148814|gb|ACGQ02000002.1| GENE 722 821837 - 823159 359 440 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 13 439 8 422 447 142 27 2e-32 MANKNGNLTIGPDQNVPTSQAIILGLQHVLAMDVYVPPFIIATSLALSSSDASGLIQSTF LGAGLATLVQVLFFMKLPVCQGPSFVPIGAIIGIYLGTSGKMGSVLGACLVGAIIVTLFG FLGVYQWIVKTFIPPLVSGTIITIVGLSLIPSALKDNIYTVTKNGPSLSQNITLAIITGI TLIFCSMISDYLPKWGKFFRIASVIIALFVGCVFASFMGVLNLSSVSSAPLFSIPHIAFI NYHLSFSWSTILTMLIIYMVLLAETTGTWFAVSSVIDEPLSDKQINHGVIGEGVGCILAA LGGATPVTGYSTNAGVISITGVASRKVFVFAGVWFVILSFIGKLSALINAIPAAVIGGVF AIVTIIIMLSGFRVIKNYDFNEREMYVVGIPLVFALALIFLPSSATTHLPQFLKFLFDSP VAIGAIIAIIMNKVLPEKNA >gi|297148814|gb|ACGQ02000002.1| GENE 723 823216 - 824076 821 286 aa, chain - ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 1 286 1 289 289 209 41.0 4e-54 MKKILKIFYCIVACLTLTACSSTKKAEKSASSVPATNAKQADKRVVTFFFHGWGSSINAE KQMVNAAKKAGVTKDVLTVIVDSNGVAHIQNAISKQAKNPIVKVGYLDNENTNYHTDAKY AYAAIMAVQKQYHYKKMNLVGHSMGNMSIMYLLMDYGKRKSLPKLEKQVDIAGHFNGIIA YDKTSYTTLNHDGKPEQMNNIYKELLKMRSLYPKGVSVLNIYGNLNDGSNSDGIVSNVSS RSLKYLIAPHVKSYTEKEILGKMGQHSKLHENKQVDQVLIKFLWNK >gi|297148814|gb|ACGQ02000002.1| GENE 724 824132 - 825778 1518 548 aa, chain - ## HITS:1 COG:lin1665 KEGG:ns NR:ns ## COG: lin1665 COG2244 # Protein_GI_number: 16800733 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 13 541 3 536 537 331 35.0 3e-90 MKNKNIENKDSQAQLLKGSAWMTAGSILSRILGALYIIPWYAWMGKDGNLANAITAQSYN IYSLFIIVSTAGIPGAVAKQIAKYNALNEYGVSRKLFHRGLLLMIGFGIVCAGLMFGLAP ILAGQDPRQIPVLKSLSYAILIIPLMSIMRGYFQGFNDMMPSALSQFIEQLARVAWMLMT AYVIMKMQDGNYLRAVTQSNLAAAIGAMFGILLLVYYYQKQKREMDDLVENSNNELQVST NSLLLEIVQQSIPFIIIDSGINIFQLVDQYTFHPIMASFVHASFDQIESMYALFGLNANK LIMIIVSLSTAMAVTAIPLLSGARARRDYQDIRKQIENTLELFFFFMIPSAFGMAAISTP IYTIFYGFDPVGSNVLFIASFTAIILGLFTVLMAVQQGLSENILAIKYLVVGLIIKCIIQ YPLIRLFQINGPLLATDLAFMFTILLSLKHLKVAFHFNFKRTKRRFIGIVSFSAIMFIVI FALQFILGRFIPADRRVTAMILVGICVGVGILVYAFLALISGLAHSILGPKISKLERKLH INYYNPKH >gi|297148814|gb|ACGQ02000002.1| GENE 725 825869 - 828283 3700 804 aa, chain - ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 2 803 3 802 803 1154 67.0 0 MYNHKVVEKKWQKYWAEHNTFKTGTDPKKKNYYALDMFPFPSGKGLHVGHPEGYTATDIV SRMKRAQGYNVLHPMGWDAFGLPTEQYALKTGQDPAVVTDENIANFKKQLNMLGFSYDWD REVKTSDPNYYKWTQWVFEQMYKMGLAYEAEVPVNWSPDLGTVVANEEIVDGKTERGGYP VYRRNMRQWMLKMTAYADRLLEDLDELDWPEPVKEMQRNWIGRSEGAQVRFKIKDSDKNF EVYTTRPDTLYGVCYTVLAPENPLVKEITTPEQKAAVEAYIKEVESKSDLERTDLNKDKT GVFTGAFAINPVNGEEVPVWIGDYVLASYGTGAVMAVPAHDQRDYEFAKKHDLPIKRVIE GGDLDKEAFVDDGVHVNSDILNGLNIEDAKKKIIAYLEEHNLGEAKVNYKLRDWDFSRQR YWGEPIPVIHWEDGETTLVPEDELPLVLPHATDIKPSGTPESPLANLTDWVNVVDENGRK GKRETNTMPNWAGSSWYYLRYVDPHNNEKLGDYELFKKWLPVDLYIGGAEHAVRHLLYAR FWHKVLYDLGVVPTKEPFQRLYNQGLILKDHDKMSKSKGNVVNPDEVIEEYGADSLRTYE MFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLDPIVSDKVVEENDGSLDKIYNQT VKKVTEDFESLHFNTAISQMMVFVNEAQKAKTIPMEYAEGFVKLLAPVAPHMMEEIWQVL GHNESISYAEWPKFDPEKLVESTVEIMVQVNGKLRGKFSAAKDAAKDELEKAAMADHHVQ KFLEGKDVKKVIVIPNKIVNIVAK >gi|297148814|gb|ACGQ02000002.1| GENE 726 828567 - 829217 468 216 aa, chain + ## HITS:1 COG:XF2574 KEGG:ns NR:ns ## COG: XF2574 COG0671 # Protein_GI_number: 15839163 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Xylella fastidiosa 9a5c # 71 205 86 218 227 78 35.0 8e-15 MKEKNNLIRFSILTLFSCAFYVFWVFSVAYQASFIKGFDKLFISLIANQNKTELFILKHL TVLANTPVVIGYTVVLVIFLLFKKKYALASFSTFVMVTANGNNWLLKHIVQRPRPTVPHL VKATGYSFPSGHSAGSMSICLVLIVVVIVLMKKGILKRLLLITLPILPFIIGMSRIYVHV HYPSDVVGGFIEAITFFLLGLLIFRTKITQQKKVRD >gi|297148814|gb|ACGQ02000002.1| GENE 727 829239 - 830684 1387 481 aa, chain - ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 475 1 479 491 331 40.0 2e-90 MGKRRIAIVTFAIFLTTFMSAVEGTIVSTAMPTIVSDLDGLEIMNWVVSTFLLMTAISTP LYGKMADRFGRKPVFLFGIFVFVLGSCLCGLSQNMLQLIIFRVVQGLGSGAIQPVAITML ADMYPLNKRAKMIGLNSSFWGLASVIAPLLGGFIVQHLTWHWVFYINLPFGILAFLLISF FFKEEITPKEGKLDLQGTIFLVSFLLAFMLFLQGLSEKYSILILGILIVLSCASLVLFKK AEQKAADPLMPLEMFRNKEFVAQNAITLLIMGVVIGLEFYLPTWMQGINGLSASIAGFAV TPSALMWVVGSFVVGNLMTKLGSKKLIAYSIVLLLIANLSLIIIPRYTPFWVFCTITFFH GLTFGAITTTTQVKSQVIVGKENIGVATAFNTLMKYLGQTIMVSIYGIVFNSVMANKLAQ YPKLNMSMMNKVVNSQKVHQLASNLIPDLRNVLHISLQSVYITSFIVIILALIINQTYRE K >gi|297148814|gb|ACGQ02000002.1| GENE 728 830697 - 831890 1435 397 aa, chain - ## HITS:1 COG:BH3300 KEGG:ns NR:ns ## COG: BH3300 COG0192 # Protein_GI_number: 15615862 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus halodurans # 3 390 7 395 399 550 70.0 1e-156 MEKRLFTSESVSEGHPDKIADQISDAVLDAILKEDPNGRVACETIVTTGMVFVFGEISTS AYVDIQSVVRQTILDIGYNDPSLGFDGNNCAVMVDIDEQSPDIAEGVDHSIETRDSKDSD ILDKIGAGDQGLMFGYAIDETPELMPLPISLAHRLMRKVAELRKNHILDWLRPDSKAQVT VEYDENDQPKRVDTVVISTQTDAEVSNEEIKRAMIEDVIKVVIPEKLLDSDTRYLINPSG RFVIGGPKGDSGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSASYAARYVAKNIVAA GLAKKCEVQLAYAIGVAHPVSVRIDTEGTGKVANDVLVKAVRAVFDLRPAGIIEMLNLRR PIYRQTAAYGHFGRTDIDLPWERTDKTQALLDFIKEN