Prediction of potential genes in microbial genomes Time: Wed May 25 19:18:51 2011 Seq name: gi|225002578|gb|ACIZ01000001.1| Lactobacillus rhamnosus LMS2-1 contig00003, whole genome shotgun sequence Length of sequence - 1742 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 115 - 1536 1027 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|225002578|gb|ACIZ01000001.1| GENE 1 115 - 1536 1027 473 aa, chain + ## HITS:1 COG:BS_ydjK KEGG:ns NR:ns ## COG: BS_ydjK COG0477 # Protein_GI_number: 16077690 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 25 466 11 454 473 402 50.0 1e-111 MYLQNQTKTGLRQRHHSLMSARVRLRLVALISTMGGLLFGYDTGVINGALPFISSELHLA PGQQGWVTSSLTLGAAFGAVLVGRISDRYGRKRLIAGLAGLFFLATLASSMAPSAIWLIG ARLILGLAVGGVSVLVPSFLAEIAPTSHRGRLVTQNELMVVTGQLLAFILNAVLGTNFGD MPGIWRWMLVLAVIPAIVLGIGIYFVPESPRWLVMKGRQAAAKASLSVLRAPQEVPRELD HLEQTIAASAKHKKVRVTALKVKWIRRLVLIGIGLGVIQQIAGINVMMYYGTSILQMTGF GRNSALITNIANGVTAVAATLVTLQLLKHVPRRPLLIIGLIGTSIAITGVTFASRLPAGS SWRAFTTITMMMIFLAFFQGAISPMTWLLLSEIFPEQLRGLGMGTATFFLWLANFAVGVL FPIGLAGIGMFWTFVCFIGTNLVSLLFVILCVPETAGKSLETLHRDEKIRLSR Prediction of potential genes in microbial genomes Time: Wed May 25 19:18:52 2011 Seq name: gi|225002577|gb|ACIZ01000002.1| Lactobacillus rhamnosus LMS2-1 contig00004, whole genome shotgun sequence Length of sequence - 3044 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 362 - 421 1.9 1 1 Tu 1 . + CDS 444 - 917 171 ## COG3464 Transposase and inactivated derivatives - Term 1249 - 1285 3.3 2 2 Op 1 . - CDS 1336 - 1545 165 ## gi|229550747|ref|ZP_04439472.1| conserved hypothetical protein 3 2 Op 2 . - CDS 1642 - 2874 879 ## LAF_0672 hypothetical protein - Prom 2894 - 2953 7.7 Predicted protein(s) >gi|225002577|gb|ACIZ01000002.1| GENE 1 444 - 917 171 157 aa, chain + ## HITS:1 COG:SP0460 KEGG:ns NR:ns ## COG: SP0460 COG3464 # Protein_GI_number: 15900376 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 1 110 170 278 422 85 39.0 5e-17 MSFICIDADTHKSVKVLSDRLNRTIKQFFLSQYSTAERAAVQRVIMDMNASYQAFVHELF PNAELIIDRFHIIQLMGRRMDTIRTQCLKQLDKHSREYKVLKSLWRLFHKANPDAQKSRY LFGLNEYSTEQNAIDIGTDTFPAFKTAYETTSISTML >gi|225002577|gb|ACIZ01000002.1| GENE 2 1336 - 1545 165 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229550747|ref|ZP_04439472.1| ## NR: gi|229550747|ref|ZP_04439472.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 69 1 69 69 75 100.0 1e-12 MNEKYNNLIKQRDKAEKKIEQADFKARQSKYYESQKKRKARSRRLIQKGLYLKNILKQKS LVLMKAKNC >gi|225002577|gb|ACIZ01000002.1| GENE 3 1642 - 2874 879 410 aa, chain - ## HITS:1 COG:no KEGG:LAF_0672 NR:ns ## KEGG: LAF_0672 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 1 410 14 423 423 726 98.0 0 MIKTKITSLVIGLILGAGLGLYGNIDDDVMAAKTDSQTTKTVKQAKSLSQQYQYKEAKSV LSGHKGTTVDHLKKSINKQQSKLVTWDDSTKISHLFYHSLIVDPGKAFSSKQAQGYKDYM VTIDEFMPMLNQLYDNGYVLINFKDIISIDKQGKVTFKPVKLPEGKKPLIISQDDVNYYE YMKNSGFADKLVVNKQGDVKNQYTNNGQKKIGDYDMVPIIDTFIKKHPDFSYGGSKGVIA ETGYNGALGYRSSKSQYGDTKKTHREAKKATKVANAMKKEGWQFASHSWGHINMTTASVD DIKKDTALWQKEVQPIVGKTPVLIFPFGADIGSFTNYTNDNAKYTYLKSSGFSIFDNVDA SKTSWGQLTNDYYRNARINVDGIRLHETMTGENTVLNDFFNTKDFYHRDK Prediction of potential genes in microbial genomes Time: Wed May 25 19:19:03 2011 Seq name: gi|225002576|gb|ACIZ01000003.1| Lactobacillus rhamnosus LMS2-1 contig00005, whole genome shotgun sequence Length of sequence - 6203 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 193 - 1272 491 ## COG3764 Sortase (surface protein transpeptidase) - Term 1285 - 1319 6.0 2 2 Op 1 . - CDS 1346 - 2350 1045 ## LGG_00442 pilus specific protein 3 2 Op 2 . - CDS 2353 - 3078 491 ## LGG_00443 pilus specific protein 4 2 Op 3 . - CDS 3071 - 5767 1646 ## LGG_00444 pilus specific protein - Prom 5875 - 5934 6.5 5 3 Tu 1 . - CDS 5981 - 6202 202 ## LVIS_1300 IS30 family transposase Predicted protein(s) >gi|225002576|gb|ACIZ01000003.1| GENE 1 193 - 1272 491 359 aa, chain - ## HITS:1 COG:SP0466 KEGG:ns NR:ns ## COG: SP0466 COG3764 # Protein_GI_number: 15900382 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pneumoniae TIGR4 # 25 272 2 244 279 155 36.0 2e-37 MTKRTRRPLGLIDIVIGCLLLAGFGVLCYPFASDAYVSYQNQQVIDRYRQQEARKNQMVL RREYNDYQQKNKQLAASQQVPGVASFNHAVNDQGTAKTAAKRNQPILTRQTVAQLTIPKI GLSLPVFDHTSDWLLQFGACLLDGTSYPTGGKNTHAVISAHRGVPNAELFTRVPALKKGD KFFISIGNHKLAYQVFKRQVIEPSDTRQLRIVPGQDLVTLMTCTPYMINSHRLLITGRRI PYVKSDDEASSWAVWWNKLKLIVALLGAVIILGVIGFVMRSLMLGRKHYLLEVPAEATQV VVKRGRHIHSFKSDQTGVTDISLPGNHYRVAIVTPLGRTKYKAYVKKIRDKSFQLKEYH >gi|225002576|gb|ACIZ01000003.1| GENE 2 1346 - 2350 1045 334 aa, chain - ## HITS:1 COG:no KEGG:LGG_00442 NR:ns ## KEGG: LGG_00442 # Name: spaA # Def: pilus specific protein # Organism: L.rhamnosus # Pathway: not_defined # 1 334 1 334 334 568 95.0 1e-161 MKKTIAKKVLTLTSTILMTLLMVLGFNGTRVQADTNDTTTQNVVLTKYGFDKDVTAIDRA TNQTWDGGGAKRLQGVDFTVYNVTANYWASPKDYKGNFDSAPVAATGTTDDQGELAKALP TQSKDASGKTRAAVYLFHETNPRAGYNTSADFWLTLPAKAAADGNVYVYPKNVQKTTYER TFVKKDAETKEVLEGAGFKISNSDGKFLKLTDKDGQSVSIGEGFIDVLANNYRLTWVAES DATVFTSDKSGKFGLNGFADNTTNYTAVETNVPDGYDAAANTGFKADNSSSDILDAPSGI LPHTGGTGTVIFAILGVALIAFGAVAYRKRRNGF >gi|225002576|gb|ACIZ01000003.1| GENE 3 2353 - 3078 491 241 aa, chain - ## HITS:1 COG:no KEGG:LGG_00443 NR:ns ## KEGG: LGG_00443 # Name: spaB # Def: pilus specific protein # Organism: L.rhamnosus # Pathway: not_defined # 1 241 1 241 241 434 97.0 1e-120 MTKSFRPLVILTFCLALLVSLATTTLQQTQAATVPTTVDVVLHKLLFKDTLPTQQANNGT TKPDFLQADVPLNGVTFTVYDVTADFWQLVSKNGGAIEAAQTTLSQDSYQPASSSLIVQV VTAGQGEAYFGDLPLRQGQHAAVYLFKETAAPKNIEASQNLVVVMSSNLQHGNQSRIDLF PKNKMVSRHTDAPKKVPKKTRQLLPQTGDTVAAWLSMLGLLIFATVLAFNIKNQKINKWE R >gi|225002576|gb|ACIZ01000003.1| GENE 4 3071 - 5767 1646 898 aa, chain - ## HITS:1 COG:no KEGG:LGG_00444 NR:ns ## KEGG: LGG_00444 # Name: spaC # Def: pilus specific protein # Organism: L.rhamnosus # Pathway: not_defined # 4 898 1 895 895 1562 97.0 0 MTKMTAKVARTGHLFAVLLILMSMLTGLVTSGSSVVTAAANIRPTYQTDANGTYPTNSWQ VTGQQNVINQRGGDQVSGWDNNTTWDGDATNTTNSYLKFGDPNKPDYQIRKYAKETNTPG LYDVYLNVKGNTQQNVKPVDIVLVVDMSGSMESNSSGTNRAGAVRTGVKNFLTSIQNAGL GNYVNVGLIGFSSPGYIGGKSGYISVKLGKAGNASQQQAINGALSPRFQGGTYTQIGLRQ GSAMLNADASGNKKMMILLTDGVPTFSNEVINSEWINGTLYGTNFGSSRDEPGNTAQLGW PYIDSSGNRIYDTWPATLGEAKKAKDSGNEVHALGIQLADDRKYMTKEKIRQNMQLITNS PDLYEDADSADAVEAYLNNQAKDIIKNFNTVTDGTITDPIGTQFQYANNQTTVTSVGKQA VPASELPSAAIQDGQLTVNHMNLGQDQEVQIHYQVRIKTEDAGFKPDFWYQMNGETLLTP KAGAAAVDFGIPSGRAPATTVYVQKQWRQLSNQSLPDTLNVTVQRKVADGSLDPNWQQTL VLKKADNWKASFTAPAYNNQGQSFSYVVKSEDASGIDLSSFISSQNMDQQTATLTLTNQQ YGFQFQKKTTDGTDLSTDQLKAMQFNLTQYSDNSFQQASKTNAITSTDLQALAPGYYSIQ EAAAPTGYQLDGTTYLFQLTSDGQWQYHGTKDNVTSGSVINGQQTLNPVGDKSDDFTVTG DHQQILTLTKYDEPKPSMTLRVIKQDNQTQYLAGAAFTLQPSAGEAETITSSATSEGQAF ATKLVADGTYTMSETKAPDGYQSNPAKIAIQVATTGKEATVTIDGEALKPGESKNGYTLA IDGSTITLQAINQPLAILPHTGGQGYQRLLGIALGLISAAFLLLLVVLIKRRVVKQHD >gi|225002576|gb|ACIZ01000003.1| GENE 5 5981 - 6202 202 73 aa, chain - ## HITS:1 COG:no KEGG:LVIS_1300 NR:ns ## KEGG: LVIS_1300 # Name: not_defined # Def: IS30 family transposase # Organism: L.brevis # Pathway: not_defined # 1 73 237 309 309 149 100.0 2e-35 TYYCHAYTPAERGSNERFNRNLRYFYPKGTRFEHISAQDLTTTLLQINQRPLKILDWQTP YQVMLTNLSKNSD Prediction of potential genes in microbial genomes Time: Wed May 25 19:19:27 2011 Seq name: gi|225002575|gb|ACIZ01000004.1| Lactobacillus rhamnosus LMS2-1 contig00006, whole genome shotgun sequence Length of sequence - 16198 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 11, operones - 7 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 354 212 ## LSEI_1852 hypothetical protein + Term 357 - 404 4.3 + Prom 375 - 434 6.9 2 2 Op 1 4/0.000 + CDS 518 - 3685 2331 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 3 2 Op 2 27/0.000 + CDS 3699 - 5321 1445 ## COG0286 Type I restriction-modification system methyltransferase subunit 4 2 Op 3 . + CDS 5311 - 6549 546 ## COG0732 Restriction endonuclease S subunits + Term 6732 - 6776 -0.1 5 3 Tu 1 . - CDS 6599 - 6805 85 ## LSL_2006 hypothetical protein - Prom 6835 - 6894 5.1 6 4 Tu 1 . - CDS 6980 - 7606 480 ## LSEI_0568 hypothetical protein - Prom 7786 - 7845 3.0 7 5 Op 1 . - CDS 7888 - 8061 161 ## pWCFS103_21 hypothetical protein 8 5 Op 2 . - CDS 8131 - 10053 1135 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 9 5 Op 3 . - CDS 10032 - 10190 113 ## LSL_2005 nickase + Prom 10312 - 10371 6.7 10 6 Op 1 . + CDS 10461 - 10670 304 ## LSL_2004 hypothetical protein 11 6 Op 2 . + CDS 10693 - 10971 246 ## LSL_2003 hypothetical protein - Term 10860 - 10894 -0.8 12 7 Op 1 . - CDS 10961 - 11623 331 ## COG4185 Uncharacterized protein conserved in bacteria 13 7 Op 2 . - CDS 11652 - 11849 295 ## LSL_2001 hypothetical protein - Prom 11939 - 11998 4.8 14 8 Tu 1 . - CDS 12000 - 12176 128 ## pWCFS103_02 replication protein - Prom 12201 - 12260 2.8 15 9 Op 1 . - CDS 12335 - 12970 554 ## pLC705_00002 predicted ORF 16 9 Op 2 . - CDS 12960 - 14015 557 ## pLC705_00001 plasmid replication initiation protein RepA - Prom 14049 - 14108 9.7 + Prom 14327 - 14386 8.7 17 10 Op 1 . + CDS 14406 - 15242 432 ## COG1192 ATPases involved in chromosome partitioning 18 10 Op 2 . + CDS 15235 - 15624 154 ## pE33L54_0002 hypothetical protein - Term 15533 - 15580 7.1 19 11 Op 1 . - CDS 15669 - 16094 171 ## pLC705_00076 predicted ORF 20 11 Op 2 . - CDS 16003 - 16197 213 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Predicted protein(s) >gi|225002575|gb|ACIZ01000004.1| GENE 1 1 - 354 212 117 aa, chain + ## HITS:1 COG:no KEGG:LSEI_1852 NR:ns ## KEGG: LSEI_1852 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 115 11 125 141 81 40.0 8e-15 RFLDTAKLFFEHDYHDRGMMTWQGFYLSDHTAALNQQNQQLNAVYVPRPQQSLAVITEVL ADAYQRQQPVTIQLKTVDQNNRHWPDITTLIHGYNANDIVVDADRFIPLPEIRNVST >gi|225002575|gb|ACIZ01000004.1| GENE 2 518 - 3685 2331 1055 aa, chain + ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 3 993 8 933 992 564 36.0 1e-160 MLELSFEKEVVKTLTTGSNQWVERKDLYGATPDQLWANFRDKLNNNNYAKLQGYPLTDTE FNQAKRAIEVRTPYEAAKLLAAENGIGKVEVERDDAKLGTVTLELFWKADVAGGKSSYEV VRQAVRPRLAGTQNVDPDRRFDVTLLINGLPLIQLELKKATVELNQAFNQIEKYAQEGKY TGIYSLLQMFVIMTPDSTAYFANAEPDHFNKAFLFNWRTRDNHPVENGLAFTRQVLNIPM AHKMVSEYTVIDQERQSLILLRPYQIYAIEAVMHRIHDHQDGFVWHTTGSGKTLTSYKTA KLAAQDPGVDKVIFLVDRRDLDEQTTSNFSAYAANDDIAINEAQNTGDLMRKLQQNDGKV LVTSIQKLHRAVKKTQAQLATGKQSRFSKTLKQRVIFFVDEAHRSQFGKMQKEIRSAFVN SNWYGYTGTPIFNENKKQLKGDLAVTTEELFGKVCHVYNLRDALEDQAVLPFNVEHVTTI GKDTLITRALEKENQRVKARRDKQGRLLSTADEAKIQAKIQAMSVKDLEETYLTPADFET DEHINQVVQYILQKGPRKTSLGHGNYNAILTTSSIEMAQRYYQAFKAAKRATHNQLDPDW PRIAITYSLSENEDQSAQKHDQMATILKDYNQQYHTNFDLTDLNLYNEDVAKRAARREAV FAHLQTDQEINLVIVVRRLLTGFDAPRLNTLFVDRTLAYQELIQSYSRTNRLQNRELKQE GQIVTFRVPAIMEANEREAYKLYSGEGSFNVIIRPTYQQAVLKFQKAVVDLKAIAPTPMA ADDLKGTTAKVQFVKAFRQVNQQLNSLSMYNDFTWENSEKAFGIAQPEVESYTGKYLRIK AAVTNQEPEKVPEELAALDFSLAVGSVVLVDYDYLTQLIQDWIDEQQQYTTPDQAQAHMT DYLQNSAKVQASLNKLAETQPQQAQLIREAMPYIEQQMQQSQQQSTPNQVPVALNARELV ADYAQRQLVKKTSVFAHTWGLDQTALLRVAREHTVGTDEWHHEQELTQSANLAAALQAQT AAGPKIPAILPLYRIKSQAAWRQFIEHDLAIYLQK >gi|225002575|gb|ACIZ01000004.1| GENE 3 3699 - 5321 1445 540 aa, chain + ## HITS:1 COG:SPy1906 KEGG:ns NR:ns ## COG: SPy1906 COG0286 # Protein_GI_number: 15675719 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 1 533 1 520 526 537 54.0 1e-152 MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE NVTRKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDNQVRTIYDPAV GSGSLLLNVGQHVQDPNLVSYHGQELNTTTYNLARMNLMLHGVSYDDMHLRNGDTLSKDW PVDEPYLFDAVVMNPPYSAHWDNSDKRLSDPRFRDYGVLPPKSKADFAFLLHGFYHLQEH GTMGIVLPHGVLFRGAKEGKIRQKLLLDNRIDAIIGLPANIFHSTSIPTLIMILKKHKTT DDVLFIDASREFEKDKNQNKLTAANIQKIVTTYQNRQDVDKYAHVASPVEIKENDYNLNI PRYVDTFEPEPEIDLDQVKADLKQLDEEISQNEQAFNELASQLVTTQINDQSKPEAHNER >gi|225002575|gb|ACIZ01000004.1| GENE 4 5311 - 6549 546 412 aa, chain + ## HITS:1 COG:L0310 KEGG:ns NR:ns ## COG: L0310 COG0732 # Protein_GI_number: 15672634 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Lactococcus lactis # 7 411 6 406 407 201 35.0 2e-51 MSANQTKYPQLRFKGFTDSWEQRKLGKMGYTFTGLSGKTKEDFGHGNAKFVTYMNVFSSP VSNSEMVENVEVDSKQHQVEYGDVFFTTSSETPQEVGMSSVWLETAENIYLNSFCFGYHP MVEFDPYYLAFMLRSPVIRKKFMLLAQGISRYNISKNKVMEMLVPVPEIVEQQKIGSFFK QLDDTITLHQRKLAKLKELKQGYLQKLFPENGSKFPQLRFAGFADAWEQRKLSDGTNKIG DGLHGTPKYSEDGEVYFVNGNNLVNGQIVIMPETKTVTSNEQSKDDKALNESTILMSING TIGNLAWYRGENLMLGKSAAYIEVSDFDKKFIYAYLQTRPVKDYYLNSLTGTTIKNLGLK AIRNTNICTPTIDEQAKIGVLFQNLDKTITLHQRKLEKLQELKKGYLQKMFC >gi|225002575|gb|ACIZ01000004.1| GENE 5 6599 - 6805 85 68 aa, chain - ## HITS:1 COG:no KEGG:LSL_2006 NR:ns ## KEGG: LSL_2006 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 10 68 1 59 59 96 83.0 3e-19 MYVSNAKINIANSNINESVWKTLIDCETFLKIIPCSHGPHLAREKTATALKTSCVIHYTS ELSIDQAQ >gi|225002575|gb|ACIZ01000004.1| GENE 6 6980 - 7606 480 208 aa, chain - ## HITS:1 COG:no KEGG:LSEI_0568 NR:ns ## KEGG: LSEI_0568 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 3 208 22 227 227 301 94.0 9e-81 MPLATLNGAKGYFQPSTNEIVIGGDEPDNALKLKTLYHEYAHSQLHGLKSAFKDRPRAYQ ETQAEAIAYVAMQNIGVDTSNYSLGYVATWAKDKAVIHSALSEIQQVSNKVIELSDGLTK QLGLQEAQKEPEHNLKKLSAHDLNKSYQGLQQQIQQATSPQQKAQFKKQLNDVHQEISER TQKQLKSFAEQHPEIKQPDSEPDQSLKR >gi|225002575|gb|ACIZ01000004.1| GENE 7 7888 - 8061 161 57 aa, chain - ## HITS:1 COG:no KEGG:pWCFS103_21 NR:ns ## KEGG: pWCFS103_21 # Name: orf21 # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 1 36 36 71 71 62 80.0 5e-09 MAWQKLADVYVALYGTTPIQIRSLPTLNDIFEDEEGQLMPNKADVKAWKAQLVAQAE >gi|225002575|gb|ACIZ01000004.1| GENE 8 8131 - 10053 1135 640 aa, chain - ## HITS:1 COG:AGpT237 KEGG:ns NR:ns ## COG: AGpT237 COG0507 # Protein_GI_number: 16119945 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 203 68 269 1117 99 31.0 2e-20 MPESFILTPENAPEWASDREQLWNEVEKKDRKSNSRYAKEFNVALPIELSVDEQKTLLTK YVQENFVDQGMVADVAIHRDHPDNPHAHVMLTNRPFNPDGTWGQKTKTEYILDSHGNKTK TPAGNVRNRKIWLVDWDKKEKITEWRHNWAASVNQALEQKNIPDRISEKSFVEQGIADTP MQHEGINSKRHERKAFNQQVRAQRSAQAKYHNLDEKIRNHEHFDALTDELSFSEKHTISH LSQQLKTYVDLEHLDDKQRMLFNWKNSLLIKHAVGEDVTKQLLTIDQQTTSLAQANQLLN KVVERATKKLYPELDFVQTTAAERRELIKETNSEQTIFKGSELAERLADIRNDLLTQQLL TFTKRPYTSWQLANQQAQTIEKQLTTVLAKHGHQLDDLKHTDRGILAAYQPSELEFISKA VKDLRVMQEVKAVVQTQYDSILTTAFPDSDLDKLETIDKEQIYTAVVYYDPELKPLSADD LSQLQQQPPVVFTSQQHQAGLNYLLGKMELKDIQHHRLQRVLKHDGTRQLFIGECGQDPK LDHKQIEMVQARLKQQTTRFDQYKQDQIKDYQAINYYPTSPKNYLTNILDEALITILYAK NTDYLRKQQLRGLKETEWAMTKKQRQHQTRNRHEDGGMHL >gi|225002575|gb|ACIZ01000004.1| GENE 9 10032 - 10190 113 52 aa, chain - ## HITS:1 COG:no KEGG:LSL_2005 NR:ns ## KEGG: LSL_2005 # Name: not_defined # Def: nickase # Organism: L.salivarius # Pathway: not_defined # 1 43 1 43 686 89 93.0 3e-17 MAIFHMSFSNISAGKGRSAIASSAYRSGEKLFDNQEGRHYFYAARLCQKALF >gi|225002575|gb|ACIZ01000004.1| GENE 10 10461 - 10670 304 69 aa, chain + ## HITS:1 COG:no KEGG:LSL_2004 NR:ns ## KEGG: LSL_2004 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 69 1 69 69 76 97.0 2e-13 MSQSNLEKQEAKLKALNQKIKDEKNKIEQRLGKQIISQANLDYANLSNDQIKLLAKQFYE FLKVKSVDH >gi|225002575|gb|ACIZ01000004.1| GENE 11 10693 - 10971 246 92 aa, chain + ## HITS:1 COG:no KEGG:LSL_2003 NR:ns ## KEGG: LSL_2003 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 92 1 92 92 105 92.0 4e-22 MSNQYEKLVEQEARLKQKIEREDFKLRQSKYYESRQDRKARSRRLIQKGALLEKYFQADN LSVEQTKELLKTFADYVNAHKPNKLKNDQPNN >gi|225002575|gb|ACIZ01000004.1| GENE 12 10961 - 11623 331 220 aa, chain - ## HITS:1 COG:CAC1491 KEGG:ns NR:ns ## COG: CAC1491 COG4185 # Protein_GI_number: 15894770 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 2 156 8 160 187 93 33.0 3e-19 MAGINGAGKSTLYRARPELFTHSKRLNADEIIQKMGGDWHKDRDNFRAMREEIKQLHAAL DTGQSIHVETTLAGQGKAQLNLIERARQNGFEVTLLYVALKNERVAINRVHERVKKGGHG VPDEIVKKRYNQSNHNLAIVAFKADNVVIYDNSQKFVSVYRREHDQVIKNNLRNFPWINP KITFESAIQKQLNEFGKNNPDLKIRNPMNNSENKNDRTSY >gi|225002575|gb|ACIZ01000004.1| GENE 13 11652 - 11849 295 65 aa, chain - ## HITS:1 COG:no KEGG:LSL_2001 NR:ns ## KEGG: LSL_2001 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 65 1 65 65 103 86.0 2e-21 MTKPSKEVEKIEQLLADPWAIDIQEIWEQAAHNPDPDKRKLFDAVHTYLLDKRQEKIINE KHFVI >gi|225002575|gb|ACIZ01000004.1| GENE 14 12000 - 12176 128 58 aa, chain - ## HITS:1 COG:no KEGG:pWCFS103_02 NR:ns ## KEGG: pWCFS103_02 # Name: repA # Def: replication protein # Organism: L.plantarum # Pathway: not_defined # 1 56 37 92 102 101 89.0 1e-20 MTKALRRYFNALRSNEKHIKNVENYLYGTMQNLFGVWWNKQAAREYATKHPDDERTWN >gi|225002575|gb|ACIZ01000004.1| GENE 15 12335 - 12970 554 211 aa, chain - ## HITS:1 COG:no KEGG:pLC705_00002 NR:ns ## KEGG: pLC705_00002 # Name: not_defined # Def: predicted ORF # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 3 203 6 190 192 253 71.0 3e-66 MSFDQRKREPFPEELALHNLKELTEAERAGLHLLMIQTSNPYEREDILEEAQQLANKRAE EAKKHSYAVTKARLKKTQKETKAELKAFTQHRNRHVKVLGKVTMMAGYFMTPKRIRPTKY YWLIPEDLSIPDRPLGRVAHVRGKDGQLQNVMVLYITKQKQRQLQDGRIIPNQFMIEFTN RIASPLQVKQGQKIEKQRQEDYRGLVAYRFS >gi|225002575|gb|ACIZ01000004.1| GENE 16 12960 - 14015 557 351 aa, chain - ## HITS:1 COG:no KEGG:pLC705_00001 NR:ns ## KEGG: pLC705_00001 # Name: repA # Def: plasmid replication initiation protein RepA # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 4 351 2 352 352 430 63.0 1e-119 MIPTNSSFKFYQATKVYGTLFFQLPKVLLYSPTYKNLSAEAKLAYVILKDRLEYSLHNDW VDENGNVYFIFSNAELQKILNCSEPKVIKTKKELEQANLLFQKKMGFDPKLKRNIPNRLY LGDLNVSATDVYKRQNDASQSNALPVTSGTKDSLARDNVFQSLATSGTKDSLAREKVSET LDTNGTKDSLVYLYKDLKTQTRDNRETKTLDFSTDQYSPELIQKQNQDLVQNAKTYLPES TTGGLFLNREGIELLGLWCNSPKQMHRFLGIILNAKKAVEREHQGTTIVLDDPQCQEMIN KTMRRFFNVLRSDSKKINNVENYLFGAMKETLVAYWNKSLANTNGGDFNEF >gi|225002575|gb|ACIZ01000004.1| GENE 17 14406 - 15242 432 278 aa, chain + ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 2 277 19 292 293 150 34.0 3e-36 MAKTYVVGNFKGGVGKTKTVTMLAYESAVKKRRKTLVIDLDPQGNATSVLGRTGGLSAIT KNVTDGFITGNLQNQITKVIPCLDIIGASTSFRTLPKLLMSKFPDDEDQQMLYLKTLLEP LKDQYDSIYLDVPPTISDFSDNAMMAADYCIIVLQTQELSLDGAKTYISYMQYLANNYNS DLDVLGIIPCMLRPGGRVDEDVLRAARDLYGNNVLQTVVKYQERLKAYDAEGIHINKTSL GYEDSWDIRAHKVFENVLDELDENQKKLDKYREGELNE >gi|225002575|gb|ACIZ01000004.1| GENE 18 15235 - 15624 154 129 aa, chain + ## HITS:1 COG:no KEGG:pE33L54_0002 NR:ns ## KEGG: pE33L54_0002 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_ZK # Pathway: not_defined # 1 127 1 133 133 62 37.0 4e-09 MSDDSIQPIINHHKRKQTSGLERKQVSIVGTNDFSATIDKEVANNNLPANDPRYKATTTM KISPVTNLKLQTLKPFINEQKSNERSDTMNDLINVLIESYIGKNLTARQANAYNQMFGLQ LSMLKPKQK >gi|225002575|gb|ACIZ01000004.1| GENE 19 15669 - 16094 171 141 aa, chain - ## HITS:1 COG:no KEGG:pLC705_00076 NR:ns ## KEGG: pLC705_00076 # Name: not_defined # Def: predicted ORF # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 29 100 1 72 77 135 91.0 4e-31 MVTKQLFGATPKKKARPQLIVPDWLVGIMDKETELRLGIQSMLSQYDHYFTRAPHTRYWL VVVDNHFEDCYSFFIYMQRFKARLSKSYEIACFARDKGKYEHYLASLKLHSNLNVEYRDT LHLIHPDSDVFEDLIHGHNHL >gi|225002575|gb|ACIZ01000004.1| GENE 20 16003 - 16197 213 64 aa, chain - ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 1 64 363 426 426 60 50.0 5e-10 ISQASSMQLSLFESAEKEEANVLLDQTIDKIRQLYGYKAIVRGYSKEKGATAIDRAGLVG GHHG Prediction of potential genes in microbial genomes Time: Wed May 25 19:19:56 2011 Seq name: gi|225002574|gb|ACIZ01000005.1| Lactobacillus rhamnosus LMS2-1 contig00007, whole genome shotgun sequence Length of sequence - 2065 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 1097 544 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 2 1 Op 2 . - CDS 1094 - 1477 348 ## LVIS_2093 hypothetical protein - Prom 1502 - 1561 6.6 + Prom 1523 - 1582 6.3 3 2 Tu 1 . + CDS 1670 - 1987 333 ## LSEI_2683 hypothetical protein Predicted protein(s) >gi|225002574|gb|ACIZ01000005.1| GENE 1 2 - 1097 544 365 aa, chain - ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 5 362 4 358 426 301 42.0 1e-81 MTTPLDDPTRLPVHDIMCIDCKSFYASVEAIRRGIHPLAADIAVLSKGDSPGGLVLAASP NCKKRYHVGLSTRRFQLRDDMQIELAEPRMADYISKNYGINRIYRQFTDDAHWYPYSIDE SFIDVTHSHNLFGSNQEIATQIQKRVFDQFGIITTVGIGQNPLLAKLALDNEAKKAAPWQ ATWTYERVPETIWQLHDLADFWSIGSRTAKRLNAIGIHNLYDLAHTDRLLLHQRFGVLGD ALYFHSWGIDYSDLTRRYLPRAENKGYGNSQVLMRDYTQAREIEVVLSEIADQVAGRLRH HQVQGEVVSVGIGYADAEEAGTSGFGAQMKIDPTNRTDDLIRATRYLFHSKWNGHAVRNV SVRVN >gi|225002574|gb|ACIZ01000005.1| GENE 2 1094 - 1477 348 127 aa, chain - ## HITS:1 COG:no KEGG:LVIS_2093 NR:ns ## KEGG: LVIS_2093 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 12 117 19 124 127 62 33.0 4e-09 MENNVPREKWLYPDRCMKKWLGWILSDHSAYMEKASISERPVEPKPEQSQETISDILEDA WQNAKIVAVQIGTPYDDRLLPDIEGAVIGHWDDQVYIQLKNGDTQSVNAADIRNVALLNP DRWWALA >gi|225002574|gb|ACIZ01000005.1| GENE 3 1670 - 1987 333 105 aa, chain + ## HITS:1 COG:no KEGG:LSEI_2683 NR:ns ## KEGG: LSEI_2683 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 103 1 103 103 84 47.0 2e-15 MDREEFETYLNANSRVVAVFRSQALAYQHSKNRQRAASKRWSETAVTSAVDKMVSQFIDN VYDKLKTNIKENKFQPYDSWVNFIEGNEVLDNLEETVSEIEFDEE Prediction of potential genes in microbial genomes Time: Wed May 25 19:20:03 2011 Seq name: gi|225002573|gb|ACIZ01000006.1| Lactobacillus rhamnosus LMS2-1 contig00008, whole genome shotgun sequence Length of sequence - 6042 bp Number of predicted genes - 9, with homology - 7 Number of transcription units - 3, operones - 2 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 27 - 86 9.3 1 1 Op 1 . + CDS 174 - 491 308 ## LSEI_2683 hypothetical protein 2 1 Op 2 . + CDS 514 - 747 236 ## gi|229550776|ref|ZP_04439501.1| hypothetical protein HMPREF0539_0032 3 1 Op 3 . + CDS 751 - 855 61 ## + Term 868 - 903 1.1 4 2 Op 1 . - CDS 1068 - 1802 553 ## COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain 5 2 Op 2 11/0.000 - CDS 1819 - 3084 1014 ## COG3037 Uncharacterized protein conserved in bacteria 6 2 Op 3 13/0.000 - CDS 3089 - 3370 320 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 7 2 Op 4 5/0.000 - CDS 3376 - 3813 233 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 8 2 Op 5 . - CDS 3814 - 5466 751 ## COG3711 Transcriptional antiterminator - Prom 5515 - 5574 1.9 + Prom 5672 - 5731 5.0 9 3 Tu 1 . + CDS 5820 - 5912 83 ## Predicted protein(s) >gi|225002573|gb|ACIZ01000006.1| GENE 1 174 - 491 308 105 aa, chain + ## HITS:1 COG:no KEGG:LSEI_2683 NR:ns ## KEGG: LSEI_2683 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 103 1 103 103 87 49.0 1e-16 MDREEFETYLNANSRVVAIFRSQALAYQHSKNRQRAASKRWSKTAVTSAVDKMVSQFVDN VYDKLKNNVKESKLNPYESWVSFIETNEVLNNLEESVAEMELEGD >gi|225002573|gb|ACIZ01000006.1| GENE 2 514 - 747 236 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229550776|ref|ZP_04439501.1| ## NR: gi|229550776|ref|ZP_04439501.1| hypothetical protein HMPREF0539_0032 [Lactobacillus rhamnosus LMS2-1] # 1 77 11 87 87 138 100.0 1e-31 MNNLEEFFECHQNEEAFAGIEKQYRKSLKRLEAKTWHQIEGIQGIINGEPDDVGRVGGIL MTERAKRGGEQPYKDEA >gi|225002573|gb|ACIZ01000006.1| GENE 3 751 - 855 61 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYIKRIGSKVLNLGKSTGFLITHQLMLPAIDSIH >gi|225002573|gb|ACIZ01000006.1| GENE 4 1068 - 1802 553 244 aa, chain - ## HITS:1 COG:BH0227 KEGG:ns NR:ns ## COG: BH0227 COG4821 # Protein_GI_number: 15612790 # Func_class: R General function prediction only # Function: Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain # Organism: Bacillus halodurans # 4 240 5 240 250 165 36.0 9e-41 MYEYMSKVQSLLSIVAEQDKPEIDKAIDLITDANLNKHSVYVFGASHAGILAQEMFYRAG GMITINAIFGREIMLDRSPITFTSDMERLVGYGTALANTVSFKKDDVLILHSVSGRNPVI IDLALASKKQGVKIIGLTNLTYSKTVSSRHPSGKRLFELSDIVLDNHGDIGDAAVQLDGA PQKVGPTSTVVGAAILNTIITESSQRIVNKTGEAPVFYSANLDDGDAKNAHLVEEYKDMI HYKF >gi|225002573|gb|ACIZ01000006.1| GENE 5 1819 - 3084 1014 421 aa, chain - ## HITS:1 COG:YPO2782 KEGG:ns NR:ns ## COG: YPO2782 COG3037 # Protein_GI_number: 16122986 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 1 367 1 372 418 211 37.0 1e-54 MGVLNFISNDVLQDPPVLIGLIAMIGLIVQKKGIGEIIKGSFTAAFGMVILTEGVNMMTA VVAAINTAVQTKMGVALSKGLSDVTFTAQYGGAVGMAMFLALVIHILIARFTPVKSIFLT GHMLWWVPFVIVAGGVEGGLRGPVLIVISAILSALYFSLAPWVMRKYVWAATGDDSFLIG HPTTILSLISGWIAKHVGDKKHSTEDIKVPEGLSFFREISISGGLVMFAVDIVVGLIAPA LVPKGGSLFMVAFNAGLNFGGGLLILLYGVRLLVNQIIPAFQGISEKLVPGAKPAFDVPI LFNYKPNAVIIGFMSAFITSTILVLIANTTNVFGIVIVPLVITSFFECGGAAIVGEGQGG LRGAIIGTAVASVAMVGLVGVSGVLMGGTIRNWILIFGGNDLSLWSIIAKFVGQLLHMIG L >gi|225002573|gb|ACIZ01000006.1| GENE 6 3089 - 3370 320 93 aa, chain - ## HITS:1 COG:lin2799 KEGG:ns NR:ns ## COG: lin2799 COG3414 # Protein_GI_number: 16801860 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Listeria innocua # 1 86 1 86 90 65 37.0 2e-11 MKFLAVCGFGVGSSMVLKMTLNKVVKELGIDATVENTDIATAKATKADAYFTSAELEKDL EQSTDSPVYPIKRYMNKDEVEEALKKYLATKED >gi|225002573|gb|ACIZ01000006.1| GENE 7 3376 - 3813 233 145 aa, chain - ## HITS:1 COG:BH0220_2 KEGG:ns NR:ns ## COG: BH0220_2 COG1762 # Protein_GI_number: 15612783 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Bacillus halodurans # 6 138 3 138 145 100 39.0 9e-22 MKVTSLIGAKEIQVVDNVANWKEAVQLASKPLLDEHTITQRYVDNMIQSVEENGPYMVIA DYFALMHAKPGDGVNCLGMSLLTTNQAFDLKGKPVKIVLVLAATDSKSHLAGLQKVMSVF MDNSSYQTILNGSKEEIVDLFKGLE >gi|225002573|gb|ACIZ01000006.1| GENE 8 3814 - 5466 751 550 aa, chain - ## HITS:1 COG:BS_yjdC_1 KEGG:ns NR:ns ## COG: BS_yjdC_1 COG3711 # Protein_GI_number: 16078265 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 3 395 88 488 510 135 27.0 3e-31 MDSSKPTDSKSRKYAILAQLLNDKHLSYQRLSSDYLVSRSSIANDIAFIKRLLAKDNVAL NFDNTGTFIEGNEEEKQKIIKRVVATTLEGKHERSVLEMFVDPSLIRIIRKTLVSKVHDL DLEVPENYLNDIILSTTVLISRGQVAKHLTPITASSLSRLLLDLDKYPVVYELLESVEQA GIYKFSKDELRYLSYVVLGNGLRFFMQDGTIPIPFERKIHALIETVSEKINLNLTKDVQL EGDLSLHLYQMVLRLQADTTVINPLLSDIKKNYPSLFGIVWYALVDFATENHLTISDDEI SFVTIHFQAAIERSKKRRRILFVCLNGIGTSALLSAQMRQILPDVSLIQIVSRDALSQQD LSDVALIISTIPLPKQSVPIATISPMLTADDMKKIMNKYIDVVMAQKPSLPAVCNPSMNK VLSILRKHVYFSTVENQQEAVDYLLSTTPWQSVEAQASYKRSVFRREELQTTYLGNGFAI PHGDPSLLETSHVSVLFPEKPIKWGNNKADVVIMLMVSMDDKQSMEPIMDLIMQGINNKD WFISKMTEVG >gi|225002573|gb|ACIZ01000006.1| GENE 9 5820 - 5912 83 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAIITLVERSQIELMQHHMIQYIVATLEPV Prediction of potential genes in microbial genomes Time: Wed May 25 19:20:20 2011 Seq name: gi|225002572|gb|ACIZ01000007.1| Lactobacillus rhamnosus LMS2-1 contig00009, whole genome shotgun sequence Length of sequence - 7667 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 2, operones - 1 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 141 64 ## LGG_00414 fructose-bisphosphate aldolase + Term 172 - 208 3.1 2 2 Op 1 . + CDS 495 - 2492 451 ## COG3711 Transcriptional antiterminator 3 2 Op 2 . + CDS 2482 - 3105 601 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 4 2 Op 3 . + CDS 3117 - 3581 338 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 5 2 Op 4 . + CDS 3586 - 3888 240 ## Sterm_0215 phosphotransferase system lactose/cellobiose-specific IIB subunit 6 2 Op 5 . + CDS 3926 - 5209 914 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 7 2 Op 6 . + CDS 5251 - 6396 603 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 8 2 Op 7 . + CDS 6408 - 7316 616 ## COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold + Term 7400 - 7449 1.2 Predicted protein(s) >gi|225002572|gb|ACIZ01000007.1| GENE 1 1 - 141 64 46 aa, chain + ## HITS:1 COG:no KEGG:LGG_00414 NR:ns ## KEGG: LGG_00414 # Name: gatY # Def: fructose-bisphosphate aldolase # Organism: L.rhamnosus # Pathway: Glycolysis / Gluconeogenesis [PATH:lrh00010]; Pentose phosphate pathway [PATH:lrh00030]; Fructose and mannose metabolism [PATH:lrh00051]; Metabolic pathways [PATH:lrh01100]; Biosynthesis of secondary metabolites [PATH:lrh01110] # 5 46 256 297 297 77 85.0 2e-13 DQLTSNLFPTAIEAAKEVVHHKNKLFDSVGKADLYNDMKPWRAELI >gi|225002572|gb|ACIZ01000007.1| GENE 2 495 - 2492 451 665 aa, chain + ## HITS:1 COG:lin2817_1 KEGG:ns NR:ns ## COG: lin2817_1 COG3711 # Protein_GI_number: 16801878 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 3 490 30 521 536 220 31.0 9e-57 MTGLTERQLSYAISHINEALIERGLPGITKLWDGSLQVDDRVFRFLAKSDDVFQFDHFHE EEERTYLILLYLLTTSDNVSLDHVVDYLGVSKSTAEKDVRRTRLFLEQKHKLLLKYTRAN GYFIQGSEVKQRLILNDIILGLQQYSDSQDVIARTTCIGIEEIVHYAREVEEHIDVTYSD DAFITLVNTLAVNVTRNLSGRVKDYDYFENKLSDTLEFASVQTITNSEWVGSESDLEWIT LVFLSSNTLKGVFQDVQSSILLAIEKMVDRFEQDTLVKIPNRKAFDKQLLAHLRPAYFRV KYGMHLTNIGVDKVFKEDTWHKMLFETVKADLEPLEKLVGKSFPIEEIKLITFYFGGVLE SRRQSDNNQQRAAVVCTNGIIAARLMFEHLVRLFPEIAFLSAISVHDFETFDKDYDLVFS TVPLNTNARQYIIHPLMTTEESINLRFRVLNDLGLSTQQGSVDQVVQIVKKHATVRDSKG LKNDLLAWLIKTNISQNTEPKRTRLPSLKHYLKPELVQIIDTNMNWEKALRFSIKPLINE GIVTLHFEDVLVEQTKDQSSFAFFGTRMAIPHTVPENGALSEAFGFSIFKTPVSFPGKRS ISIIVPISLRDTTKHLRAIHQLSHIAEDTSLIDKLINTNNSKTAYQLILESIKIQEKRGG VKLEY >gi|225002572|gb|ACIZ01000007.1| GENE 3 2482 - 3105 601 207 aa, chain + ## HITS:1 COG:TM0066 KEGG:ns NR:ns ## COG: TM0066 COG0800 # Protein_GI_number: 15642841 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Thermotoga maritima # 8 180 11 181 205 102 34.0 6e-22 MNIDSYPKITTIMRGYTYEEAMTVIKVLTEFDHQVGVEVTTNNPDYLKIIHDGNKAYGDK VYIGVGTILNAEQASSAIAVGAKFMLGPAEFTPDIFKIAREAKVITVPAAMSPSEVVEML DLGADIVKLFPASTLGPSFFKAIQGPLGKQKLMAVGGVNVKNARQFFESGASYLGVGSSM FNQSDVKTKNALGLRKSVEEFLRSVPE >gi|225002572|gb|ACIZ01000007.1| GENE 4 3117 - 3581 338 154 aa, chain + ## HITS:1 COG:BH0192 KEGG:ns NR:ns ## COG: BH0192 COG1762 # Protein_GI_number: 15612755 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Bacillus halodurans # 8 138 7 137 160 77 32.0 1e-14 MQAEKLVSESDIFIDQEFQDEQEYFEVVTQHLLKEGKVKASFLESILQRERSYPTGLDTG EIKVAIPHTDYTNANTTQLVVTTFKSPVGFHQMDDPDYVIPVNVAIMILFNNPEKQPQML KYIMGIVQSQENLHEIINTKDVKSMKQLFENFGG >gi|225002572|gb|ACIZ01000007.1| GENE 5 3586 - 3888 240 100 aa, chain + ## HITS:1 COG:no KEGG:Sterm_0215 NR:ns ## KEGG: Sterm_0215 # Name: not_defined # Def: phosphotransferase system lactose/cellobiose-specific IIB subunit # Organism: S.termitidis # Pathway: not_defined # 5 100 2 96 96 73 43.0 1e-12 MATQKTVIVCCASSMITSTMAAGKVREIASENSLPEPNIIQCKFSEVEGELNTNHVDFIV PTGHLDETVTHGVKTISGTPFVTGVHEDKASSEILAALEA >gi|225002572|gb|ACIZ01000007.1| GENE 6 3926 - 5209 914 427 aa, chain + ## HITS:1 COG:SA0238 KEGG:ns NR:ns ## COG: SA0238 COG3775 # Protein_GI_number: 15925950 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Staphylococcus aureus N315 # 14 416 14 414 419 290 40.0 4e-78 MQGVVDALNWISQLGPMVMMPIIIFVLGLIFRVKLNVLIKSALTIGVGFAGVTIVINWFV AQVGPSVHRMVSNWGIQTSIMDVGWPARAAATWAFPLAAVVVFLVLGVNALMLVTRMTNT VMVDFWSYNHYIFTGAVVWYVTKSATISLIASALDAAISFKLADWTAPLAQKYFGIEDVT FPTANSVAWAPVAWALNKLWDIIPGINKIDARPEKIQKKFGFVGEPLFMGFLIGLLIGVL AEDPVGNILIVGMSTSATMLLTPKMMQILMQGLIPFANAIKGLLNKRFPNNKFTIGVDAA LTVANSSAIACGILMVPITLILAALLPGNKLLPISDIAYQAMWLSAWPVAFGKGNIFRGL LSTIVITCCVLWIATSLAPVHTQLALAGGFKMAKGMSMVSTEDAGTHLITWIFYKIAQFL KVVFPAI >gi|225002572|gb|ACIZ01000007.1| GENE 7 5251 - 6396 603 381 aa, chain + ## HITS:1 COG:SMb20510 KEGG:ns NR:ns ## COG: SMb20510 COG4948 # Protein_GI_number: 16264240 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Sinorhizobium meliloti # 1 381 1 382 382 450 54.0 1e-126 MKISDINIYKVKPRWIFVKLSTDEGISGWGEMISGTKTETVVAGGYEIGRKLIGRNPFEI ERLWQEMHRSFFRGGPINGTIISGLEMALWDIKGKALNVPVYELLGGAARDRIRVYSWIG GDRPSDVAEQAQARVDKGFTAIKMNATSEMHYIDSYNKVQAVVDRVASIRDQVGDKLEIG IDFHGRVHRPMAKVLAHALEPYHPMFLEEVVLPENWDSFDDIAREVSIPLATGERLYTRW AFKNLFQQGAIDIVQPDVAMCGGILETRKIAAMAEAYDMACAPHAPYGPVSLAATLQVDA CTPNVFIQEQSLGIHYNQGFDLLDFVKNKKIFQYKDSYVELPKGPGLGIDMDEDKIKKVA QEGLVWNNPSWTNYDGTIAEW >gi|225002572|gb|ACIZ01000007.1| GENE 8 6408 - 7316 616 302 aa, chain + ## HITS:1 COG:BH0225 KEGG:ns NR:ns ## COG: BH0225 COG1735 # Protein_GI_number: 15612788 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Bacillus halodurans # 2 270 4 293 331 155 31.0 1e-37 MINSVCGEIPNSSLGTTYIHEHLYVYPSEQLKYYDYTIDDIDRATAEAISFKNAGGNTLV DLTPINYGRSPMLLKKIAQAANVNILCITGFHKEEFQPKWLPEMSNQEIYDFLVHEILDG IGFDKIKPAAMKLGTSYNAVTESEKRIIDIEGNVQRDTHIPIVTHCDQGTMGVEQLKGLK AAGADLSHVCLSHVDLAEDVDYIERLADMGASVSFDHIGRHLADHDALRVKMLTRLVADG YGDRVCLAGDMGRKKYYLAYGGKPGLRYILTNLKNDLLPHIGNEAYEKMVNSNPQKVLIR EA Prediction of potential genes in microbial genomes Time: Wed May 25 19:20:24 2011 Seq name: gi|225002571|gb|ACIZ01000008.1| Lactobacillus rhamnosus LMS2-1 contig00010, whole genome shotgun sequence Length of sequence - 2522 bp Number of predicted genes - 5, with homology - 4 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 105 - 218 62 ## 2 1 Op 2 . + CDS 260 - 538 105 ## LGG_00439 hypothetical protein + Prom 957 - 1016 7.6 3 2 Tu 1 . + CDS 1060 - 1458 411 ## COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase + Term 1570 - 1616 12.6 4 3 Tu 1 . - CDS 1553 - 1897 133 ## COG2801 Transposase and inactivated derivatives - Prom 2060 - 2119 6.5 + Prom 2100 - 2159 4.9 5 4 Tu 1 . + CDS 2185 - 2521 304 ## LGG_00026 transposase IS5 family protein Predicted protein(s) >gi|225002571|gb|ACIZ01000008.1| GENE 1 105 - 218 62 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MATRFGSVNVNVEINVLLTVNDFKKDSLAVVGVCDQK >gi|225002571|gb|ACIZ01000008.1| GENE 2 260 - 538 105 92 aa, chain + ## HITS:1 COG:no KEGG:LGG_00439 NR:ns ## KEGG: LGG_00439 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 91 1 91 111 164 95.0 1e-39 MGNPKNFQLINRTNLVASTLKRSNNKSGVIGVSWDKTAQNWVARLYFQGHLVLNHVYVHM EDAIAARKAAEKRYIVPLQKKYNQTHQKNQLN >gi|225002571|gb|ACIZ01000008.1| GENE 3 1060 - 1458 411 132 aa, chain + ## HITS:1 COG:SPy0844 KEGG:ns NR:ns ## COG: SPy0844 COG3576 # Protein_GI_number: 15674878 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase # Organism: Streptococcus pyogenes M1 GAS # 4 131 2 128 133 73 35.0 1e-13 MVNLTEEMKNMLKSQLPFLATTGIDGKPQVGPKGSLHVLDDSHLIYFEHTFRQAYDNLSS NHLAAVAVADRGAQQGFRFEGTAHIHEADDFANQILDKTNIFDRFPRAGVVVIDVERIYK LDNTLEAGIQIA >gi|225002571|gb|ACIZ01000008.1| GENE 4 1553 - 1897 133 114 aa, chain - ## HITS:1 COG:FN0787 KEGG:ns NR:ns ## COG: FN0787 COG2801 # Protein_GI_number: 19704122 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 110 93 204 207 69 40.0 2e-12 MKLAIENNDGIKPDTVHSDQGTAYRSSTYNTFLAGEGITHSMSRPGTPGDNSPMESLWRH LKIERFSFEHCLSELEMMKRIEAAINWYNNERRQETLNGMTPMTYRNHAVKKTA >gi|225002571|gb|ACIZ01000008.1| GENE 5 2185 - 2521 304 112 aa, chain + ## HITS:1 COG:no KEGG:LGG_00026 NR:ns ## KEGG: LGG_00026 # Name: is3 # Def: transposase IS5 family protein # Organism: L.rhamnosus # Pathway: not_defined # 1 112 1 112 472 234 100.0 6e-61 MAYRHRATQLSFQSFNNGLGVPLSSDNEWVQLADMLPWQQLDEAYQLLFTEMGGRAAKPF RLLYGASLIKQAEHLTDRSVVTAIRDTPAYQYFIGLDTYTTDLPFNHSTLVY Prediction of potential genes in microbial genomes Time: Wed May 25 19:20:33 2011 Seq name: gi|225002570|gb|ACIZ01000009.1| Lactobacillus rhamnosus LMS2-1 contig00011, whole genome shotgun sequence Length of sequence - 4162 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 80 - 139 7.7 1 1 Op 1 . + CDS 243 - 3065 2009 ## COG0474 Cation transport ATPase 2 1 Op 2 . + CDS 3125 - 3388 238 ## LGG_00455 hypothetical protein 3 1 Op 3 . + CDS 3440 - 3865 131 ## COG2963 Transposase and inactivated derivatives Predicted protein(s) >gi|225002570|gb|ACIZ01000009.1| GENE 1 243 - 3065 2009 940 aa, chain + ## HITS:1 COG:L76107 KEGG:ns NR:ns ## COG: L76107 COG0474 # Protein_GI_number: 15672660 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 921 1 913 918 916 54.0 0 MTPYNEHKADVLKRLATSRQSGLTSEEAQARLTQHGPNALAASKPLPAWRQFLATLKEPL VIILFIAVLLAWASAGYDFFVRHDPSHGMAAVYESIAILLLIFVNAGLSFWQAKSAQKSL DALKVMADHHAKVLRDGDWLTVPATELVPGDIVSVKTGDFIEADVRWLHVAELQTNEAHL TGEAEPVQKQTHALGADVQIGDRTNMGFSGATVTHGNGLGVVVATGMQTELGKIATLLDQ VKDKKTPIERTIARLTTKLMMVAMVIVAFTLLVELLKAYQQTGSLSFAALAESLSTAIAL AVAAIPDALPAVLSIVLTIGATMLAKNNGLIKSLNSVETLGATSYIASDKTGTLTKNEMT VTRFYANGASYVVEGDGYEPVGEIIPDDEADTPGFSRFMMAAVLNNEAAIQTDDEGRSRP YGNPTDVALVVMGHKFGIDRDTILSKDQALDIDIIRELPFDSDRKMMSVVIKDGDQYQVL TKGAPDVILAKTDAILDHDQLVTLPAGQTAVEAQVNRFAEQALRTLAVTLRDIDEDLALH GSTAELEQHLTLLGIAGIIDPPRPEVRQSVTTLHQAGIQVVMITGDHAVTARAIALKLGI VTDPSARVVEGKQLEAMTDEDLFRLAPSIRVYARVSPEHKQRIVRALQRHGETVAMTGDG INDAPALRAADIGIAMGINGTEVTKDAADLILLDDKFTTIERSVRAGRTIFGNIKNFMRH ELTTNVAEVLALLFGVLLMTQPVGQVAATTPTLTALMVLWVNMISDALPSFALGYDVPEA DLMNQPPRNVKQSILHGMLGRIFLRGIVMGGLVYVAFIWAASQGMSGAEAQTLAFLTLVF GQLWHVFDARSTRTLFARNPFENHQLLLAVAFAAVASLLVTIMPFFNEVMGTAPLSSTLY AAVVFIPALPTLILSGIKELWLRWHRPPVAPERQAAPEHD >gi|225002570|gb|ACIZ01000009.1| GENE 2 3125 - 3388 238 87 aa, chain + ## HITS:1 COG:no KEGG:LGG_00455 NR:ns ## KEGG: LGG_00455 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 87 1 87 87 137 98.0 1e-31 MNVYHALKMIQIEHQPLNHRQVVITDENGKSLSQLTDLLSDCLSKIDLFVDLPSTDTASD VIDDLHLLTPLPNDVLDEYQKVLDQPI >gi|225002570|gb|ACIZ01000009.1| GENE 3 3440 - 3865 131 141 aa, chain + ## HITS:1 COG:RSc1437 KEGG:ns NR:ns ## COG: RSc1437 COG2963 # Protein_GI_number: 17546156 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 1 141 1 139 177 72 33.0 2e-13 MTKYSNELKAKVVSEYLKGGIGYRELSVRYGIPSRANIRTWVNQARTHGIESLKVKHNKT TYSQTFKITVVEYVHTHQVSRVRAAAHFGISPSQVNSWIRIVKDQGVTGLRAQRKGRPPM GKHKQIKPIKKLEPTQEEKYK Prediction of potential genes in microbial genomes Time: Wed May 25 19:20:40 2011 Seq name: gi|225002569|gb|ACIZ01000010.1| Lactobacillus rhamnosus LMS2-1 contig00013, whole genome shotgun sequence Length of sequence - 14747 bp Number of predicted genes - 13, with homology - 11 Number of transcription units - 11, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 907 - 942 3.5 2 2 Tu 1 . - CDS 959 - 3052 1642 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 3095 - 3154 5.1 - Term 3627 - 3667 2.4 3 3 Tu 1 . - CDS 3675 - 3956 445 ## LGG_00829 cytosolic protein - Prom 4030 - 4089 4.5 + Prom 4047 - 4106 4.4 4 4 Tu 1 . + CDS 4254 - 5426 1123 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 5481 - 5532 9.5 - Term 5548 - 5586 -0.1 5 5 Op 1 4/0.000 - CDS 5591 - 6601 828 ## COG0392 Predicted integral membrane protein 6 5 Op 2 25/0.000 - CDS 6614 - 7642 830 ## COG0438 Glycosyltransferase 7 5 Op 3 . - CDS 7645 - 8853 1113 ## COG0438 Glycosyltransferase - Prom 8880 - 8939 7.3 8 6 Tu 1 . - CDS 9101 - 10684 1122 ## COG0531 Amino acid transporters - Prom 10758 - 10817 4.1 + Prom 11114 - 11173 6.0 9 7 Tu 1 . + CDS 11198 - 11737 448 ## LGG_00823 hypothetical protein + Term 11770 - 11825 16.8 - TRNA 12521 - 12607 58.3 # Leu CAA 0 0 - TRNA 12658 - 12728 65.3 # Cys GCA 0 0 - TRNA 12774 - 12845 71.8 # Gln TTG 0 0 10 8 Tu 1 . - CDS 12825 - 12992 70 ## - TRNA 12853 - 12925 58.7 # His GTG 0 0 - TRNA 12936 - 13006 56.4 # Trp CCA 0 0 - TRNA 13012 - 13092 66.5 # Tyr GTA 0 0 + Prom 12946 - 13005 2.3 11 9 Tu 1 . + CDS 13035 - 13175 65 ## gi|47092471|ref|ZP_00230261.1| hypothetical protein LMOh7858_2508 + Term 13403 - 13440 0.1 - TRNA 13097 - 13169 74.9 # Phe GAA 0 0 12 10 Tu 1 . - CDS 13135 - 13473 90 ## - Prom 13652 - 13711 3.3 - TRNA 13215 - 13288 76.6 # Asp GTC 0 0 - TRNA 13296 - 13369 81.1 # Met CAT 0 0 - TRNA 13380 - 13471 66.6 # Ser TGA 0 0 - TRNA 13481 - 13552 67.2 # Glu TTC 0 0 - TRNA 13557 - 13644 62.7 # Ser GCT 0 0 13 11 Tu 1 . + CDS 13671 - 13982 172 ## gi|257147743|emb|CAR86716.1| Putative protein without homology - TRNA 13672 - 13745 92.5 # Ile GAT 0 0 - TRNA 13760 - 13830 71.8 # Gly TCC 0 0 - TRNA 13850 - 13922 72.1 # Phe GAA 0 0 - TRNA 13928 - 14001 76.6 # Asp GTC 0 0 - TRNA 14009 - 14082 81.1 # Met CAT 0 0 - TRNA 14131 - 14204 85.6 # Met CAT 0 0 - TRNA 14213 - 14286 73.9 # Met CAT 0 0 - TRNA 14314 - 14387 87.4 # Pro TGG 0 0 - TRNA 14393 - 14466 67.6 # Arg ACG 0 0 - TRNA 14527 - 14598 79.2 # Gly GCC 0 0 - TRNA 14633 - 14705 88.4 # Thr TGT 0 0 Predicted protein(s) >gi|225002569|gb|ACIZ01000010.1| GENE 1 307 - 747 452 146 aa, chain - ## HITS:1 COG:BS_perR KEGG:ns NR:ns ## COG: BS_perR COG0735 # Protein_GI_number: 16077938 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus subtilis # 8 142 8 142 145 162 55.0 2e-40 MNQAVYNKTINLLKAKQIRVTPQREAIISYMIDSTAHPTAEMIYAKLSPQFPHMSVATVY NNLRLLVDLNLVEEMSSNDAATHFDFPIEPHYHAICTNCGKIFDFTYPGVTDVEAVAAKK TGFKVSGHHLEVYGICPECQIKLGMK >gi|225002569|gb|ACIZ01000010.1| GENE 2 959 - 3052 1642 697 aa, chain - ## HITS:1 COG:lin0927 KEGG:ns NR:ns ## COG: lin0927 COG1368 # Protein_GI_number: 16799998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Listeria innocua # 7 654 7 653 653 621 49.0 1e-177 MNQIGAKIRGFFNTRLGFLVLAIVLFWAKTYWAYQAKFNLGVTGSFQHLILAVNPIPTTL FLFGIALYMSGRKSYVTMLIIDALTSVWLFANVLYYREFSDFLTFALIKGSGAVSNNLNK GIMGIVQPTDFLVFVDVLFLILLLAFKVIRMDIRPIKKRFALGVSLLAVLMFGANLAMAY SDRSGLLTRTFDNNYIVKYLGLNAYTVVDGVKTASNSATKANADSSDVKSVLNYLNKNRV TPNAEYTGVAKGKNVFVIHLESLQQFMIDFKWDGQEVTPNLNKLYHESDTLSFDNFFNQV GQGKTADAEMMMENSLFGLPEGAAMVTDGTTNTFQAAPAILDQQGYTTASFHGDVPSFWN RDNTYKSWGYDYFFSKSYFSSGKNYDVGYGLKDKIFLKDSAQYIEQLPQPFYAKMITVTN HYPYTLDKENQTISKTDTGDDTVDGYVQTARYLDEAIGEFFDWLKETGLYDKSMIVLYGD HYGISNNHKKAMAKLTNITGFNDYDNAMYQRVPFMIHMPGLKGGINHTYGGEIDALPTIL NLLGVKDNDTVQFGSDLLSANHPQTVAFRNGDFVTPDFTKVGSQYFNTSTGKKITKLSPS QKKTVDAATNRVTTELSLSDRVINGDLLRFYTPSGFKKVDRSDFSYKLTDTKKKLKAAQK KGTSLKAENKGKSVANEYKTDAPELKSDDDESSSESK >gi|225002569|gb|ACIZ01000010.1| GENE 3 3675 - 3956 445 93 aa, chain - ## HITS:1 COG:no KEGG:LGG_00829 NR:ns ## KEGG: LGG_00829 # Name: ykuJ # Def: cytosolic protein # Organism: L.rhamnosus # Pathway: not_defined # 1 93 1 93 93 144 100.0 1e-33 MKQSQLVAIIKRLEAMQAGDGEAQSRRFEKNGDEKGLVTYDPKTETYELEELGTHQTFQF DNIDLAAMEIYDLMDFDEDEGTNGTDSSDQAQA >gi|225002569|gb|ACIZ01000010.1| GENE 4 4254 - 5426 1123 390 aa, chain + ## HITS:1 COG:L56488 KEGG:ns NR:ns ## COG: L56488 COG0436 # Protein_GI_number: 15672039 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 3 390 4 391 391 413 53.0 1e-115 MTLQPLNEQLPAIEVSEIRQFDESVSDIPGILKLTLGEPDFNTPEHVKQAGIKAIQENYS HYTGMVGDPELREAAQHFFKTKYGTDYQATDEILVTVGATEALATAITTISDPGDAMLVP SPIYPGYIPLLTLNHVTPLYMDTSKTDFVLTPELIEATITANPDAKIKGIILNYPSNPTG VTYRAAEVKAIADIAAKHNLYIICDEIYSELTYGEPHVSMGQFAYDRTFIVNGLSKSHAM TGWRIGFLMGPQQLIAQAKKVHQYLVTAATTIAQRAGIEALTNGADDAQVMKAAYVKRRD FVYAALIDMGFSVARPDGAFYLFAKIPTQLHLSSREFTHALAHEQKLALISGTAFGPGGE GYIRISYAASMTDLQEAVKRLRAFMASHIG >gi|225002569|gb|ACIZ01000010.1| GENE 5 5591 - 6601 828 336 aa, chain - ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 3 330 6 332 357 216 38.0 4e-56 MTRKNKLAVFIMVLIGAGIFIYEARDLNGAKLIHELLSLDLKWLLVAFLLMFGSWIVETF VVQIFIKNGSDELDFKTALRVPLVEQLFNAITPMASGGQPAQLFALMQSGVEAGRASSVL LMKFVVYQFMVLINFVLTLLIGFDQVSRHFGALVIFIIFGFVIHVIVIVGLLMVMYYYKF TKKLVRIIMIPVGWFVKPEKKMAMQLDLDHKIDTFYAESLHLKREKVRVIKACFLTLIQL LLYYAVPYFVLLALGVNHVSIVEVIVLHVMIVMIVSLFPIPGGAGGAEYSFKTLFATYVA SPSKLVLGMLLWRFLTYYLGMICGIVAMALPPKKDA >gi|225002569|gb|ACIZ01000010.1| GENE 6 6614 - 7642 830 342 aa, chain - ## HITS:1 COG:lin2699 KEGG:ns NR:ns ## COG: lin2699 COG0438 # Protein_GI_number: 16801760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Listeria innocua # 1 333 1 334 341 350 50.0 3e-96 MIVINMFSSANKVAGQGVGAVYTELMGLLKHDFANEFQINVNRYTRSDISHYHTIDPKFY LSTFSKKRGRKIGFVHFVPSTLDASLKLPRVARWTLDRYTLAFYKRMDELVVVNPNFIPK LEAYGINPDKVTYIPNFVSQRTFHPVSREKRQALRHANGFKPDDFVVFGAGQVQDRKGVG DFIKLAQQNPDYRFVWAGGFSFGRITEGYERLKKAVANAPANLNFTGIMPRETMIDYYNM ADLFLLPSFEELFPMSVLEAFATDTPVMVRDLELYQQIITPYAITAADVADMQARIRALA DDRELLATYAAKSREAAQVYDEARLEKVWHDFYVQQAALGKH >gi|225002569|gb|ACIZ01000010.1| GENE 7 7645 - 8853 1113 402 aa, chain - ## HITS:1 COG:SPy0516 KEGG:ns NR:ns ## COG: SPy0516 COG0438 # Protein_GI_number: 15674620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 401 1 405 444 339 44.0 6e-93 MNIGIFTDSYFPQVSGVATSIKTLKDDLERKGHQVYIFTTTDPHVPDDAVEPNLFRFTSV PFVSFTDRRIAVRGLFHAYAVAKELNLDIVHTQTEFSMGYIGKFVAKQLKIPTIHTYHTM YEDYLHYVLNGHLLKPYHVKQFTRAFLYHVSGVIAPSERVYDTLRRYGVKTDIKIIPTGV DLTQFAEQKDPHLREKLGLADVPVLVSLSRVAYEKRIDKLISAMPAILAQIPKAVLLIVG DGPAREDLEAQAAELGIADHVRFTGEIDHDDVGDYYRVGDVFVSASDSESQGLTYIEAMA ADRKVVALAGDYTDQLLDDPALGTTFTTEAEMVHQVVNYLKHPNAYDDPKPRTEKLVAIS ADRFGDRVLDFYRDVISHYSPNEADETVPWTDESSSKRTMKG >gi|225002569|gb|ACIZ01000010.1| GENE 8 9101 - 10684 1122 527 aa, chain - ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 516 19 534 545 637 64.0 0 MLALGSLIGSGWLFGSWEAAEVAGPAAIFSWVIGGVIIGVIAYNYVELGTMFPESGGMSK FAQYSHGSLVGFIASWANWISLVTLLPIEAVAAVQYMASWPWKWAGFTHGFLHAGRITPQ GLLVVFAFIIIFTLLNYWSVTLLTRFTSFISIFKIGVPLLTIVLLALSSFHPENYGHSLA TLMPYGSAPIFAATSVSGIIFSFNAFQTVINMGSDVKRPQKNIGRGIGISLLISGIIYIL LQSVFITTISPDMLAAHGWKGLNLNSPFADLAILLGIHWLSVLLYMDAFVSPFGTGVSFV ASSGRALQAMVGNNHIPKFIGKIDEKYGTPRVAMVVNAVLSMIMVSIFPSWGTLASVIST ATLIAYLTGPVTVISLREMAPNFKRPVKSAMLRVMAPLAFVLTSLAAYWAKWPTTVEVIG VIFLGIPLYLFYEWRSGWRSTWQQLKASAWMLGYLVFLSVISLIGSAEFNGLNWIHYPMD FVVIILGAVVFYFWGINSHIISKYFRKAARVNDKVKMPAAEDIERDK >gi|225002569|gb|ACIZ01000010.1| GENE 9 11198 - 11737 448 179 aa, chain + ## HITS:1 COG:no KEGG:LGG_00823 NR:ns ## KEGG: LGG_00823 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 179 1 179 179 310 100.0 1e-83 MKKEELSLIREAVNDSEAFRKLFEQYRPLVLKVLKPYNLREFSYEDWLQEARIAMIKAVA RYDGSSGSQFGPYYRMVLQSHLRSILRRHFAHKRRIDATAIPFKASALESLQERLAIRSV EDGLLMRVEFFQLLENLSPLEYEAFETAVLHPFDTPTSNRFRRALERSRAKIIKFTRED >gi|225002569|gb|ACIZ01000010.1| GENE 10 12825 - 12992 70 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVELRSPKPSVWVQLLLSLLYNGGIGEAVNTPVCGTGIRGFDPHIPPFYWGIAKR >gi|225002569|gb|ACIZ01000010.1| GENE 11 13035 - 13175 65 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|47092471|ref|ZP_00230261.1| ## NR: gi|47092471|ref|ZP_00230261.1| hypothetical protein LMOh7858_2508 [Listeria monocytogenes str. 4b H7858] # 2 46 38 87 120 67 70.0 2e-10 MNPKERIYSPPRLASSLLLHNGAGRNRTADTCSFNALLYRLSYRAI >gi|225002569|gb|ACIZ01000010.1| GENE 12 13135 - 13473 90 112 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MENYPSLAEGNGLENRQVDVNPREGSNPSFSFIIIAGWSSSVARRAHNPKVAGSNPAPAI NMVPWSSWLGRLPVTQEITGSSPVGTVPLDLRGTNSIKRFKWLGSSVGRAMH >gi|225002569|gb|ACIZ01000010.1| GENE 13 13671 - 13982 172 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257147743|emb|CAR86716.1| ## NR: gi|257147743|emb|CAR86716.1| Putative protein without homology [Lactobacillus rhamnosus GG] # 1 103 1 103 103 184 100.0 2e-45 MGLGGLEPPTSRLSSVRSNQLSYRPNIITAAGDENRTRDNSLEGCGFTTKLHPHKDDYEY GAGQNRTADTCSFNALLYRLSYRAANGPNGTRTRDLLRDRQAS Prediction of potential genes in microbial genomes Time: Wed May 25 19:21:12 2011 Seq name: gi|225002568|gb|ACIZ01000011.1| Lactobacillus rhamnosus LMS2-1 contig00014, whole genome shotgun sequence Length of sequence - 19487 bp Number of predicted genes - 19, with homology - 18 Number of transcription units - 12, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 19 - 78 7.2 1 1 Tu 1 . + CDS 189 - 935 514 ## COG0500 SAM-dependent methyltransferases + Term 1174 - 1207 -0.9 - Term 855 - 908 -1.0 2 2 Tu 1 . - CDS 1071 - 2618 1414 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 2649 - 2708 5.0 3 3 Op 1 . + CDS 3031 - 3969 857 ## COG1397 ADP-ribosylglycohydrolase 4 3 Op 2 . + CDS 3992 - 4645 379 ## COG0681 Signal peptidase I + Term 4660 - 4724 21.6 - Term 4647 - 4710 19.1 5 4 Op 1 . - CDS 4775 - 5107 427 ## LC705_00282 hypothetical protein 6 4 Op 2 . - CDS 5204 - 5941 647 ## LC705_00281 integral membrane protein 7 4 Op 3 . - CDS 5960 - 6742 719 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 8 4 Op 4 . - CDS 6826 - 7584 728 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 7799 - 7858 5.7 + Prom 8096 - 8155 5.3 9 5 Tu 1 . + CDS 8271 - 8960 778 ## LC705_00278 hypothetical protein + Term 8978 - 9026 9.9 + Prom 9200 - 9259 7.0 10 6 Tu 1 . + CDS 9283 - 9489 115 ## + Term 9510 - 9549 9.3 + Prom 9494 - 9553 1.6 11 7 Tu 1 . + CDS 9612 - 10991 1284 ## COG1114 Branched-chain amino acid permeases + Term 11039 - 11084 6.1 - Term 11018 - 11081 2.1 12 8 Tu 1 . - CDS 11100 - 12194 1057 ## COG1316 Transcriptional regulator - Prom 12233 - 12292 5.3 + Prom 12239 - 12298 3.2 13 9 Op 1 . + CDS 12323 - 14122 1614 ## COG1164 Oligoendopeptidase F 14 9 Op 2 . + CDS 14128 - 15000 661 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 15 9 Op 3 . + CDS 14997 - 15845 644 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases + Term 15891 - 15941 16.1 - Term 15878 - 15929 20.1 16 10 Op 1 42/0.000 - CDS 15958 - 16755 769 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 17 10 Op 2 . - CDS 16752 - 17471 547 ## COG1121 ABC-type Mn/Zn transport systems, ATPase component - Prom 17506 - 17565 5.7 18 11 Tu 1 . - CDS 17636 - 17980 493 ## LC705_00269 hypothetical protein - Prom 18013 - 18072 2.1 - Term 18066 - 18096 0.1 19 12 Tu 1 . - CDS 18113 - 19465 1263 ## COG2610 H+/gluconate symporter and related permeases Predicted protein(s) >gi|225002568|gb|ACIZ01000011.1| GENE 1 189 - 935 514 248 aa, chain + ## HITS:1 COG:L103246 KEGG:ns NR:ns ## COG: L103246 COG0500 # Protein_GI_number: 15673455 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 2 197 6 200 247 63 23.0 4e-10 MQEDRDFWNHFAADYAAAEQDSRLPLAHDVTTWMIANGLLPADSLIDLAAGTGRFAIRLA PYVRHLTLIDWSSAMLTYAKIRLKANKKTSMTYLTDDWHQLVSSTSADLVFVSQLPTLLP EELSLLNALARKKVILNFQTQQDDALVRHALTLLGHDMPVAYQADPSRVAGYQNWLSLHQ IPFETHTLTYHLEEQTTVSDMLPELGLPVGVKAAERLAKALTGHENPHMPVTDHLTYAYT QLMWHPKN >gi|225002568|gb|ACIZ01000011.1| GENE 2 1071 - 2618 1414 515 aa, chain - ## HITS:1 COG:SP0770 KEGG:ns NR:ns ## COG: SP0770 COG0488 # Protein_GI_number: 15900664 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 511 1 512 513 428 43.0 1e-119 MSVLTVTGLSQRFLDKVLYQDASFQVNIEDHLGVIGQNGVGKSTLIKILTGALTPDAGKI IWQKHLHVGYLDQYANLVPGQTVIEFLRTAFDELYRKEAKMNQIYADYAAHPDDELLAKA GELQQELEAGDFYELETTIQTVAEGLGITAMGMDHPVDALSGGQRSKLILAKLLLEKPDM LLLDEPTNYLDVSHIAWLTDWLQNFEGAFIVISHDFDFLENVTNAVLDIEFGQITKYTGT LKQAMRQKEADHETYLKAFAKQQETIKKTEAFIRKFKAGTRATMAKSREKQLARMDKLTP PGTRAKAHLAFPYMPVNRQMLVDVNDLVVGYDRPLLQPINFSVAKDQVIAFEGFNGVGKS TLLKTILGLLPALGGSVEIADNVTFGYYEQELHWDQPKQSPVQYLQQRFPALTQKTVRQV LSRTALTSEEANNPLTMLSGGEQAKVKLADLMLQTTNILVMDEPTNHLDDDTKNALRTGL QQYPGAVLLVSHEAGFYDHSWVDTVVNVEQLQVKE >gi|225002568|gb|ACIZ01000011.1| GENE 3 3031 - 3969 857 312 aa, chain + ## HITS:1 COG:alr1337 KEGG:ns NR:ns ## COG: alr1337 COG1397 # Protein_GI_number: 17228832 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Nostoc sp. PCC 7120 # 7 301 6 306 313 139 31.0 6e-33 MGIMESRLIHGTVGFAIGDALGLPVKGQSQADLAAAPVTTMKGYGTFNQPAGTYSDETGL TLAGLDALQSGFDQAKLIAAYQAWFKNGKHAPYGKRNPDIWPSVATALTTGKATAAPNEP GALIRALPFAFFAYQTFDTDLFKKAEGSRLFQNFVTLTNTDPENMVATAIYTQIAIELLA DAPDLPTAIATGITKAGDYFANKQAEQPVFDSFQSLLAAPTSLDATATDPLSLLVRVLHA LSTWPDYHDAVLHALALGGATDTAAALTGGLAGLAYGYTSLPHRWCLTLAEYAQIVDLCR QAEKSGFFPKYD >gi|225002568|gb|ACIZ01000011.1| GENE 4 3992 - 4645 379 217 aa, chain + ## HITS:1 COG:SA0826 KEGG:ns NR:ns ## COG: SA0826 COG0681 # Protein_GI_number: 15926554 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 28 215 3 181 191 121 37.0 1e-27 MAPRLVVDLSKSLPEGAIVKNNSHSVLRTILEFLVLFIVIFFATQLLMKYVVSKDVVQGT SMQPTLENGERLYSVRVMQPKRNDIVVINAPDRPKSLYIKRVIGMPGDTVSAKNDKLYVN GKAIAEPYLNHKFARTEINQWASQQGLDSSTIKFTNDFNIKTLSSTKSAKVPAGKYFVMG DNRLVSHDSRDFGFVDKSKIQSVVVWRYWPLNRLKIF >gi|225002568|gb|ACIZ01000011.1| GENE 5 4775 - 5107 427 110 aa, chain - ## HITS:1 COG:no KEGG:LC705_00282 NR:ns ## KEGG: LC705_00282 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 110 1 110 110 196 100.0 3e-49 METEAYMTLAEVKSRQLALKRQVPLDQAIAENIQNWAQWLLDEGFEGSYFTAKLEGAAIL IRDLNGQLVATMTTDAPSYVAAFKQADRMTMLAIQTKLRRLIDRHGLTLS >gi|225002568|gb|ACIZ01000011.1| GENE 6 5204 - 5941 647 245 aa, chain - ## HITS:1 COG:no KEGG:LC705_00281 NR:ns ## KEGG: LC705_00281 # Name: not_defined # Def: integral membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 245 1 245 245 461 99.0 1e-128 MTENLMTYRELKHKAKEQLKTGTNRRDLMLAYLLPSLLQAAASIVAYLAILAVIQSFGVE KTLTDPNGFQAYYMQNGNNTGTLNTIQSLVNTMLVQGVNFAVLDLVRHQTRVHPFRAVLG LFNGKWFWGSISLWIFTYFLTLIGLSFLIIPGVLLILGWRQAFWVFKDGHEADQRFSSIS ALIGSWRLMRGFKANLLGLYVSLIGWYLLENLTFHLFDWAINPYLQLVHANYYENRRAYK MAAQA >gi|225002568|gb|ACIZ01000011.1| GENE 7 5960 - 6742 719 260 aa, chain - ## HITS:1 COG:BS_yveR KEGG:ns NR:ns ## COG: BS_yveR COG0463 # Protein_GI_number: 16080483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 1 219 1 220 344 133 34.0 3e-31 MVTPLVTIIVPVYNLESYVAHGLKSLLAQTYSHLQIIVIDDASSDRSPQIVTRFAQRDRR IQAILKPVNQGVSAARNSGLEQARGELVAFMDGDDWYEPDFIAHAVDVMTQGWDLIAMPF FRDDPNPRPVQEHLRKAKQLTRKGLIRQMLHPIGYIRGYLWNKVFRRDVIERLQLRFDEQ MSIMEDELFTATYVMATRHFLYTGHPAYHHVVRRDSATQSLGVLGAIPQQLYALWRIHQV LRHAHRYEKGTKKEAIKIDH >gi|225002568|gb|ACIZ01000011.1| GENE 8 6826 - 7584 728 252 aa, chain - ## HITS:1 COG:BS_glcR KEGG:ns NR:ns ## COG: BS_glcR COG1349 # Protein_GI_number: 16080683 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 3 232 1 231 258 142 37.0 6e-34 MAMYREKRFEEIKKLLAARNELSIEDIMKAVGVSRDTARRDIVALDAQGVARRTRGGLVS LNFGHTIPSYSTRLKRFSTQKTKMAKAALSLIKAGGVYFIDDSTTLLKLSQSIHHPVTVY THSLDNAIALSVEERVNLHLFGGKLDHHARFFFEPTMLETLRRIAFDAAFIGATAIAEDG VYFSYMEDAQVKQAAALSARQVVVVSETEKFQIQAPYRGLELGQIDTLITDKKLAQTQKQ WFPTKTDFLIGD >gi|225002568|gb|ACIZ01000011.1| GENE 9 8271 - 8960 778 229 aa, chain + ## HITS:1 COG:no KEGG:LC705_00278 NR:ns ## KEGG: LC705_00278 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 229 1 229 229 249 100.0 5e-65 MTSNHSQKVEAIADHANNDSDNSQIRAKSIVVSNEAKNDVKADQADTYSLINPKKENTIT VGTNDIAEAAHQIAEQKAAAAKAAEEQAAAEKAAAEKAAAEQAAAQQAAQEQAQAQAAQQ AANASAAAASATTTSTTQTTTNKGTFKLSFYDPAVLGSNMGYDGVAANLSVFPKGTRLKI TLSDGTVWYRTVNDTGSFANGNPNQLDVAMPNSQIPSAGVMTATVEVVG >gi|225002568|gb|ACIZ01000011.1| GENE 10 9283 - 9489 115 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSRRVPGLSVSASLGWWEETSDYLVESSLRVAIATSEVMAGIAPITAIAYRRIRPYAARP LSVTLAVK >gi|225002568|gb|ACIZ01000011.1| GENE 11 9612 - 10991 1284 459 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 4 430 2 427 449 271 41.0 2e-72 MSTQAKLTKRQYLTLGSLLFGMFFGAGNLIFPIHMGQLAGAAWLPAAIGFLLSAVLLPLL SIMAISLTRASSMYDLTRPAGHGFALFFLLATHASLGLLIASPRTATVTYAIGIAPFLNK GQQQIGLLIFSFIFFLITFLLARNESKITTYIGKLLNPLLLLLLAIIFFWALLIKGDIRA ISFTANAKLITGNLTNGFLQGYNTMDALAGLGFGVTIITALKLMGLHHASSRAKAVAKVG SLAMGLEALIYILLIMLGAISLGFSKITANGGTAFNQIMTHYTGLIGTALLGAMTLLACL TTAIGLVTSFSQDLGHRFPKLGYHFFLPITTIGAFLIANFGLDQIIAYSTPILMLLYPLA IALIMLGLLHPWIGKNTRIYKTTIGFTLVPALLDAIHALPTSLAQLPFFAAIQHFATTFI PWFSVGMDFVPFLIIGFLSGLAAAKLSGAKLAPDLPDPE >gi|225002568|gb|ACIZ01000011.1| GENE 12 11100 - 12194 1057 364 aa, chain - ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 22 352 5 333 338 215 38.0 9e-56 MSKQQKSDLRIKNRKPKRRHPILRAVVLIVLVALFLAGGYAARFYSQAKKAVAKTYDPVS TKTVNSDLNGKKPISILLMGTDTGAFGRTDTGRSDTLMLVTINPKEKKTTMLSIPRDTLA EMVGTGDQSPTYEKINAAYSYGKSDAAIKTVEKLLNVPINYYVTVNMEGLQKIVDAVGGV DVNVPFTWTDANTGGQTFKKGKAHLNGELALAYARMRDEDPEGDYGRQKRQQEVINQIVK HLMSVKSLTNYQKVMDSLSSSMRTNLTFDDMMAIAQNYRSSASTIERKQLQGIGVYIDNA AYQVMKTDTLQKASDEMRAQLGLSKKTLNNFNTHQNEINNSLGFDWTGNNPVYTVSLDGV TTGP >gi|225002568|gb|ACIZ01000011.1| GENE 13 12323 - 14122 1614 599 aa, chain + ## HITS:1 COG:lin2292 KEGG:ns NR:ns ## COG: lin2292 COG1164 # Protein_GI_number: 16801356 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 4 597 7 601 601 614 53.0 1e-175 MQHLPAREDVPTQLTWDLTTIYPDDSAWETDFKAVRAQAKAAVALKGTLGNSADALVTGI KAVLAVFRRFEKVYVYSSLKSDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPS DKLTAWRDTESLKPFGHFIDAITVNREHVLTTAAEALIASAGDALNASHATFNVLNNSDL QFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKEAFEALLRAYESLKNTFAQTLSGQVKA HNFNATAHHYKNARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVALRKKVLAVDQLHM YDIYTPLTGQPPLTYTLEQAKAEALKALAPLGDDYLEHVREIFDNRYIDVVENKGKRSGA YSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTRHNQPYVYGDYPIFVAEIAST TNENLLTDYFLTHSDDSKVRAYILNYYLDGFKGTVFRQTQFAEFEHWIHQQDQQGEPLTA TSMSQYYADLNARYYGPEVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISS GEPDAAARYLDYLKSGSSKYAIDTMKTAGVDMTKPDYLEAAFSVFEQRLMELEKILQKG >gi|225002568|gb|ACIZ01000011.1| GENE 14 14128 - 15000 661 290 aa, chain + ## HITS:1 COG:L81616 KEGG:ns NR:ns ## COG: L81616 COG2084 # Protein_GI_number: 15674197 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Lactococcus lactis # 2 283 3 284 293 294 52.0 1e-79 MKLGFIGTGVMGTGIVKNFLNAGHEVIVYNRTKAHAQTVLDAGATWAESPHAVAAQCHVV MSMVGFPQDVETVYYGCDGVLAGTHAGDLIIDMTTSTPTLAKSIASKAADKGAHAIDAPV SGGDIGAKNGTLTIMVGGEKNLLSRLKDLFAPIATSVNYFGPAGSGQHAKMANQIMIAGT MTGLTEMLVYGKAAGLDLNEMLTVVGSGAGANWSLSNYGPRMLQADYTPGFFAKHFLKDL RIALDEAKKMHLQLPATQLAEQLYANMVAAGKGDLGTQGLVTMNDHWRNA >gi|225002568|gb|ACIZ01000011.1| GENE 15 14997 - 15845 644 282 aa, chain + ## HITS:1 COG:SP0619 KEGG:ns NR:ns ## COG: SP0619 COG0639 # Protein_GI_number: 15900527 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Streptococcus pneumoniae TIGR4 # 3 275 4 274 277 225 44.0 9e-59 MTKIAILSDIHGNMTAFSAVLKDAQAHHADEYWFLGDLFLPGPGAAKLWDRLHALPLTHL VKGNWDDDLFWVLDGPVDLNQPTDVYFSRLVAYLWPQLNADILTAIRHWPLHEVFEQDGL TISLAHNLPTSNHGHRLYPDQPQSNFDQIAPDPKIDVAIYGHTHQQLLRYTSSGQVILNP GSIGQAYSPRPHLQTTTYADYALLSLHHGAMTDLDLRQVPYDAAAELAQAKQAALPYLEV YTKLRHTGATSTHNAPYLAQFEQKHDYRAEVTTFLRQLKPHR >gi|225002568|gb|ACIZ01000011.1| GENE 16 15958 - 16755 769 265 aa, chain - ## HITS:1 COG:MA0025 KEGG:ns NR:ns ## COG: MA0025 COG1108 # Protein_GI_number: 20088924 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Methanosarcina acetivorans str.C2A # 3 241 4 243 274 99 27.0 7e-21 MNLFAYAFMQNAFMASTFIAITTGIVGVFVVARNMSFLAHTLSEVGFAGAAFAVFAGIRP LDGMLLFTAISSISVGRMSVQASRREASISAVSSLFIGLGILFLSLSSANASYATTILFG SIIGISQGDVWQLVALAAGVLFTLYFGYRRLAFDSFDSVGSAAQGLKSKYISIYFLLILA VSVSIGAQIVGSLLVFILLTLPPNVAKYLGKTLPQMIVISVVTALIGVWSGLYLGFLTNW PVTFFIAAIEFGFYFLALWYHQKTN >gi|225002568|gb|ACIZ01000011.1| GENE 17 16752 - 17471 547 239 aa, chain - ## HITS:1 COG:slr2044 KEGG:ns NR:ns ## COG: slr2044 COG1121 # Protein_GI_number: 16329703 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn/Zn transport systems, ATPase component # Organism: Synechocystis # 1 199 18 220 289 127 31.0 2e-29 MSEPILTVDHLRFGFRDQQLYQDLSFHLDVGSMTSLVGPNGVGKTTLIRLLMGQLKPQAG TIRFRKQPSVRLGYVPQFRNVDAEYPLSIRSFIQLRQLDHLFFWHTAKEKAALARVIEAT HLTQIANTRLGMASGGEKQKAYLAQALLDEPNFLILDESTASLDVNTKHELMDLVQELNQ TQKLTVLFVTHDLSLAKQYTNQYLLLTGDSYEMKPTAEMNLASMPEELRNDAENRGVIA >gi|225002568|gb|ACIZ01000011.1| GENE 18 17636 - 17980 493 114 aa, chain - ## HITS:1 COG:no KEGG:LC705_00269 NR:ns ## KEGG: LC705_00269 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 114 1 114 114 204 100.0 6e-52 MYEPTKKRRVAEDVAKIFPEEVTNQIFDVIAVMRKAKQIVTAPVAIAFSDDYTDDEMYAM IIQGNLAPAQEFPLTYKGDKPFLGHGYILVVKDKPKTIRIDFSAANPLKAAEKD >gi|225002568|gb|ACIZ01000011.1| GENE 19 18113 - 19465 1263 450 aa, chain - ## HITS:1 COG:BS_yojA KEGG:ns NR:ns ## COG: BS_yojA COG2610 # Protein_GI_number: 16079010 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Bacillus subtilis # 1 448 1 442 444 456 61.0 1e-128 MDLLVLILGILLLLVLIIKFKFNTYVSLIITAVVVALGLGMAPAKIATSIQTGIGSQLGE LALVFGFGAMLGRLVADAGGAYRIAHTLINAFGRRGLQLAVVLASFIIGIALFFEVGIVL LVPIVFAIAAEAGVPILTLGIPMAAALSVTHGFLPPHPAPTAISTALGASAGLVLAYGVI VAIPTVYIAGPLFSKLAHRFVPDAFERRGNLKALGPQKSFKLEETPGFGISVLTSLFPVI LMAIATIYELVIHGGKMPKTPSGMDNVIAFIGSPSIAMLISLLFAMWAMGYARQLPAKDI MTTLEEAVKSIAMLLLVIGGGGAFKQVLIDGGVGDSVKNLFVGSSISPLILGWLIAVVLR IALGSATVAAMTASGLVLPLMQSAGIQPALMVLAIGAGSLAASHVNDAGFWMFREYFDLT IKQTLLTWTLLETIISVVGLGGVLLLSLFV Prediction of potential genes in microbial genomes Time: Wed May 25 19:21:39 2011 Seq name: gi|225002567|gb|ACIZ01000012.1| Lactobacillus rhamnosus LMS2-1 contig00015, whole genome shotgun sequence Length of sequence - 27789 bp Number of predicted genes - 24, with homology - 24 Number of transcription units - 11, operones - 4 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 157 - 192 -0.2 1 1 Tu 1 1/0.500 - CDS 340 - 1908 1400 ## COG1070 Sugar (pentulose and hexulose) kinases - Prom 1977 - 2036 1.6 2 2 Tu 1 . - CDS 2090 - 2998 919 ## COG1023 Predicted 6-phosphogluconate dehydrogenase - Prom 3174 - 3233 5.4 + Prom 3142 - 3201 7.7 3 3 Tu 1 . + CDS 3281 - 4123 597 ## COG1737 Transcriptional regulators + Term 4176 - 4218 3.8 - Term 4164 - 4206 -0.0 4 4 Op 1 2/0.250 - CDS 4254 - 5126 621 ## COG1082 Sugar phosphate isomerases/epimerases 5 4 Op 2 . - CDS 5123 - 6010 759 ## COG4130 Predicted sugar epimerase - Term 6077 - 6127 4.5 6 5 Op 1 . - CDS 6280 - 6669 441 ## LGG_00270 4-oxalocrotonate tautomerase 7 5 Op 2 2/0.250 - CDS 6766 - 7638 867 ## COG0191 Fructose/tagatose bisphosphate aldolase 8 5 Op 3 16/0.000 - CDS 7668 - 8564 897 ## COG1082 Sugar phosphate isomerases/epimerases 9 5 Op 4 9/0.000 - CDS 8566 - 9618 1232 ## COG0673 Predicted dehydrogenases and related proteins 10 5 Op 5 . - CDS 9659 - 10699 1009 ## COG0673 Predicted dehydrogenases and related proteins 11 5 Op 6 8/0.000 - CDS 10730 - 12691 1757 ## COG3962 Acetolactate synthase 12 5 Op 7 3/0.000 - CDS 12693 - 13667 928 ## COG0524 Sugar kinases, ribokinase family 13 5 Op 8 5/0.000 - CDS 13717 - 14532 601 ## COG3718 Uncharacterized enzyme involved in inositol metabolism 14 5 Op 9 5/0.000 - CDS 14566 - 16041 1320 ## COG1012 NAD-dependent aldehyde dehydrogenases 15 5 Op 10 . - CDS 16435 - 17922 1081 ## COG0477 Permeases of the major facilitator superfamily - Prom 17987 - 18046 5.7 + Prom 18257 - 18316 7.0 16 6 Tu 1 . + CDS 18346 - 19140 621 ## COG1349 Transcriptional regulators of sugar metabolism + Term 19186 - 19222 5.8 - Term 19174 - 19210 4.1 17 7 Tu 1 . - CDS 19297 - 20157 750 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 20184 - 20243 3.4 - Term 20238 - 20289 7.1 18 8 Op 1 . - CDS 20304 - 21056 678 ## COG1794 Aspartate racemase 19 8 Op 2 . - CDS 21062 - 22615 1400 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 22649 - 22708 6.7 20 9 Tu 1 . - CDS 22813 - 23310 563 ## COG0782 Transcription elongation factor - Prom 23348 - 23407 3.8 - Term 23597 - 23655 8.3 21 10 Op 1 . - CDS 23675 - 24985 1163 ## COG1686 D-alanyl-D-alanine carboxypeptidase 22 10 Op 2 40/0.000 - CDS 24982 - 26172 972 ## COG0642 Signal transduction histidine kinase 23 10 Op 3 . - CDS 26176 - 26862 682 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 26908 - 26967 3.0 + Prom 26755 - 26814 4.4 24 11 Tu 1 . + CDS 27006 - 27695 360 ## LC705_00242 hypothetical protein Predicted protein(s) >gi|225002567|gb|ACIZ01000012.1| GENE 1 340 - 1908 1400 522 aa, chain - ## HITS:1 COG:SA2294 KEGG:ns NR:ns ## COG: SA2294 COG1070 # Protein_GI_number: 15928085 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Staphylococcus aureus N315 # 3 521 1 517 517 561 50.0 1e-159 MTVKYMIGVDLGTTSTKVVLFDLKGNAIATANNPYPLYQDTPDMAEEDPEEIFAATVGGL TEVMHRGNVQPGELGGVSFSAAMHSLILMDEHDKPMTRVITWADNRAAAYATKLKQSDLG MTLFKATGVPTHPMSPLVKLLWLNDAHPELMARATHFIGIKDYILFRFFGRYVQDYSLAN ATGLFNIHTMDWDDQALSVAKVRRDQLPELVDTSYQLTGLNANYAAVTGIDDQTPFILGA SDGTLSNLGVGAIDPGVLAVTIGTSGAVRVVTDKPVVDPQGRLFTYYLAPNQWVVGGPVN NGGIVFRWVRDQLFAPEKLTAEQLKVDSYEILTEIASKIPAGADGLLFHPYLGGERAPIW DANARGSFFGLTRQHTRAHMVRAALEGIVYNLYMVMLMIEGITGKPRAIQATGGFARSAL WRQMLADVFEQEVNIPESFESSALGAVVIGMKSLGLIDDLSAVKDMIGVTNTHEPNEANF AAYRALLPIWIRLTRKLGSEYQAIADYQRAHPDPAARNQAQD >gi|225002567|gb|ACIZ01000012.1| GENE 2 2090 - 2998 919 302 aa, chain - ## HITS:1 COG:L53699 KEGG:ns NR:ns ## COG: L53699 COG1023 # Protein_GI_number: 15674167 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted 6-phosphogluconate dehydrogenase # Organism: Lactococcus lactis # 1 296 2 300 302 372 63.0 1e-103 MQVGMVGLGKMGMNLVANMRDHDIEVVAFDLNDQARTEVGKYQVKAVASLDALVMSLASP RIIWSMVPAGKPTAATIQQLAKLLSPGDVVIDGGNSYYQDSIAHGKLLAAEGIHFFDVGT SGGMAGARANGNFMIGGDEEQFAQIEPLFKAIAAPGGYLYTGPVGSGHYLKMVHNGIEYG MMQAIGEGFDVLAHSPYAYDNAAVAKMWNHGSVIRSWLMELAGDAFSEDADLAKIQGIMH SSGEGAWTVEEALRLHVATPVIASALMMRYRSEEADTMTGKVVAALRNQFGGHAVDPTTQ RH >gi|225002567|gb|ACIZ01000012.1| GENE 3 3281 - 4123 597 280 aa, chain + ## HITS:1 COG:L54944 KEGG:ns NR:ns ## COG: L54944 COG1737 # Protein_GI_number: 15674168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 4 279 5 280 282 188 36.0 9e-48 MHDFLVQLQIYKPNLSRQEKKLADYLQQHPDRASHANIAELSAITGVSTATISRFAKALG YPSFQALKMALVQSTPEPDHTLFAELSPADSVETLAHKIFTSNIDALRTTLTNLDSAALT KAVDWITHANQLGLFGLGASNLVALDGYHKFLRTAIPVVYAADYHMQLMAATHLTAADAM ILTSHSGKDKDAIALAELAKKQNVPLIVITGAPGSHLAKMADAAFVAVAEESRYRTEALH ALIAELSLMDTLFMISAIQTNSQTAPLFRRVRSTIDATRQ >gi|225002567|gb|ACIZ01000012.1| GENE 4 4254 - 5126 621 290 aa, chain - ## HITS:1 COG:BS_iolH KEGG:ns NR:ns ## COG: BS_iolH COG1082 # Protein_GI_number: 16081020 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Bacillus subtilis # 1 287 1 288 289 330 54.0 2e-90 MKLAYDPSMFRDSMTLKQMFDEVARLGYEYVELSPRRDFIWFYEHPVADHTLIKQVKKYA KDAGVKISSVLPVQQWSSPDEQEREFAVRNLKRTIEITAELEVPVLNTEFAGDKFQPLVS QGQWYKSMAELAPVFEKNNIELEIQPHPNDFIESNLAATRLIRSLDLDWVHQVWCSAHAF YMDDGRGDIRQQFAESGERITHVLIADTFNHKGNFSLRYIINPPGAPVTIHQHLNPGGGE VDFTTLYQVLNERHFDGIITNNVFAWPDRVDWSNDVTLQSIQSGLHLLKT >gi|225002567|gb|ACIZ01000012.1| GENE 5 5123 - 6010 759 295 aa, chain - ## HITS:1 COG:STM4435 KEGG:ns NR:ns ## COG: STM4435 COG4130 # Protein_GI_number: 16767681 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar epimerase # Organism: Salmonella typhimurium LT2 # 1 283 1 271 271 172 36.0 7e-43 MGIELTQMALNRKIAQQRPLAKFFQLAEAAGIHQVELRNDMTTSDGSETVIDGMQVAEFQ TLKQKYDMQILTINAIQQFNNPAKLSKNRDLLTKLAELSAQIGNQAIIFVPEVNARDKRT EQQRLDDTVSSLQVFGDILAAYHLTGFIEPLGFRASTMRYPWTALDAINLSGRTEFKLTI DTFHFFLAHLTAEQFKAGVDINRVGLIHLSGIEPIHALREVVDEDRILITERDIMQNIEQ VHLFEAMGYRGHYSFEPFSSRLAAETNQQLTQQILASIERLNQPTAVFSTEVTQP >gi|225002567|gb|ACIZ01000012.1| GENE 6 6280 - 6669 441 129 aa, chain - ## HITS:1 COG:no KEGG:LGG_00270 NR:ns ## KEGG: LGG_00270 # Name: iolK # Def: 4-oxalocrotonate tautomerase # Organism: L.rhamnosus # Pathway: not_defined # 1 129 1 129 129 251 100.0 5e-66 MPLVRFDMLKGRSPETIKAILQITHEVMVAAFEVPERDRYQIVHQHEPYEMVVEDTGLGI PRTDQVVVISLVSRVRTVHQLEQFYESLARRLSEAGLVDKNDLMVNVSFNHDQGWSFGQG KAQFLDGSL >gi|225002567|gb|ACIZ01000012.1| GENE 7 6766 - 7638 867 290 aa, chain - ## HITS:1 COG:BS_iolJ KEGG:ns NR:ns ## COG: BS_iolJ COG0191 # Protein_GI_number: 16081018 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Bacillus subtilis # 1 285 1 286 290 287 52.0 1e-77 MALIPATKLIQAALADHAAIGHFNINGADWLETYLKVAQKTGTPIIVATSDRIIDFLGGF DFIASYVRFMVQALHITVPVVLHLDHGLSVEHVYQAIDAGYTSVMFDGSKLPIEENVALT DEVVRYAHQHHVSVEAEVGSVGGNENGLINGIRYASVTDAVKMAATGIDALAAALGSVHG DYVGRPNLNFERMAAIAAATKLPLVLHGASGIPDDQIQQAIQTGTAKININTEVNTVWTA AITKAVQVKRSGHDPQPILLAGKKAIAQLVESKMKAFHILGKSKRSVTFE >gi|225002567|gb|ACIZ01000012.1| GENE 8 7668 - 8564 897 298 aa, chain - ## HITS:1 COG:STM4424 KEGG:ns NR:ns ## COG: STM4424 COG1082 # Protein_GI_number: 16767670 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Salmonella typhimurium LT2 # 2 292 12 302 306 304 50.0 2e-82 MTIALGIAPIGWTNDDMPDLGKEVTFEQAIDEMALAGYQGTEVGNKYPKDPVVLKHYLDL RHLKIASAWFSAFLTTKPYEETEAAFIKHRDFLHAMGAKVIVVAEQGHSVQGMLDKSVFD DKPHFTDEEWQRLATSLERLGDRAHEVGMQIVYHHHMGTGVQTTAEIDKLMAMTDPDKVS LLFDTGHLVLSGEDPLTIFDRYHDRIKHIHFKDVRPEQAQQERTDHLSFLQGVKNGMFTV PGDGMIDFKPIWEAIQKQHYDGWIVVEAEQDPAKANPFEYALKAKHYLDTIMTIPQAV >gi|225002567|gb|ACIZ01000012.1| GENE 9 8566 - 9618 1232 350 aa, chain - ## HITS:1 COG:BH2220 KEGG:ns NR:ns ## COG: BH2220 COG0673 # Protein_GI_number: 15614783 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 4 344 2 342 345 333 45.0 3e-91 MVQREVKIGIVGLGRLGKIHATNLATKIPHAKLQAATSVVPEELAWARQELGVEETYEDF DDMVQHADIDAVFIVSPSGFHLPQIESAMQAGKHVFSEKPIGLDLDAIKHTQAVIADHPE LKFQLGFMRRFDDSYVYAKQLVDAGKIGDITLIRSYSIDPAAGMESFVKFATSANSGGLF LDMSIHDIDVIRWLTGKEIDKVWAIGLNRAYPVLDQAGELETGAALMQLEDKTMAILVAG RNAAHGYHVETEIIGTKGMLRVAQVPEKNLVTVMNEEGIIRPTSQNFPERFAQAFLSEEQ AFVDSILTGETVGITAEDGLQGTKAALALQRAYEKNDIVKVTDVDKKVGA >gi|225002567|gb|ACIZ01000012.1| GENE 10 9659 - 10699 1009 346 aa, chain - ## HITS:1 COG:BS_iolG KEGG:ns NR:ns ## COG: BS_iolG COG0673 # Protein_GI_number: 16081021 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus subtilis # 1 345 1 343 344 343 47.0 3e-94 MVVKVGVIGTGAMGRAHIDRLTNVLTGAEVIAVTDIDQEAAQAAVRDFKLNAKVYPDDTS LLKDPDIDAVFVVSFGGAHEATILKALDTDKFIFTEKPLATTLEGAKRIVDKEISKPRKV IQVGFMRRYDEGIHALKTKLDSGIIGTPLVVRASHINPNVAANYSNEMAITDTLIHEIDE MHWLLDDDYASIQITYPRQSSQVTNEGLRDPQLATLTTKKGTVIQVLVHVTAQYGYEVKL EVVGETGELKLPDYGFEPIVRTQATQQTAMETSWVNRFLQAYNTEVQEFIDHVAKDQSPV GPSAWDGYVAAVTAEAAIRSQKDQEPVLINVAETPTFYQTNQPVKA >gi|225002567|gb|ACIZ01000012.1| GENE 11 10730 - 12691 1757 653 aa, chain - ## HITS:1 COG:BH2318 KEGG:ns NR:ns ## COG: BH2318 COG3962 # Protein_GI_number: 15614881 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase # Organism: Bacillus halodurans # 19 653 2 637 637 816 62.0 0 MSAMELKAQGGEAKPAAADTVRLTTAQALVRFLNQQYLDVDGEVTPFVEGIFAIFGHGNV LGLGEALQEDPGHLKVYQGHNEQGMASTAIAYSRQLYRHKIFAVTASAGPGSANFVTAAG NAYVNNIPILFLPADTFATRQPDPVLQQIEVDSSATTTTNDALKPVSRYWDRIERPEQLM SALLKAFEVLTNPETAGPVTIALPQDTEGEAYDYPRSFFNKRVHVIKRIQPSAAELTEAV QLVKASRYPVLIVGGGAKFSEAGSAIEAFSDKLNIPIVETPTGKSTISATFANNMGGTGI LGTTAANEVVAKADLIIGAGTRYTDFTTASKTAIHPEKTRVLNINLNRMQSYKFDGFPIV ADVRDTLSQLTSELSGYQSDFTNLADLKAAWQQERQRLAHTNYDAPDYTPEVKGQFSAAT LAEYAEKLQTHFTQTEAVIAVNDTIAPDSIIVAAAGSLPGDVQRIWDPIVPNTYHMEYGY SMMGYEVPAALGIKLAQPDKESYALVGDGSFIMLHSELVTALQYHKKINILVFDNSGFAS INNLQMAQGSNSYRTEFRTADHDILTIDFAKIAEGYGAKTYHVNDRDSLVAALEDAKKQT VSTLIDIKVLPKTMTQGYGQSWWRVGVSEVSDNPNVQKAYQDIQTGIDQAFKY >gi|225002567|gb|ACIZ01000012.1| GENE 12 12693 - 13667 928 324 aa, chain - ## HITS:1 COG:lin0403 KEGG:ns NR:ns ## COG: lin0403 COG0524 # Protein_GI_number: 16799480 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Listeria innocua # 3 319 9 325 325 394 62.0 1e-109 MSQKFDLIAIGRAAVDLNAVEYNRPLEETKSFAKFVGGSPANIAIGSAKLGQKVGFIGKV SDDQLGHYVTQYMADVGIDTTQMVKDDAGHKIGLTFTEIISPEESDILMYRNEAADLYLT TADVSEEYLAQAKMLVISGTGLAQSPSREAILKALTVAKSLGVEVVFELDYRPYTWKNAE ETSLYYQLVAQRADVIIGTRDEFDVLENHHGNTDEQTIATLFQYDPKLIVIKSGVQGSNA YTKAGDHYHFGVFKTKVLKSFGAGDSFAAGFLYAYSHDLGIETALKYGSAAASIVISQLS SSEAMPDLAKLTAFIHEAERQEVH >gi|225002567|gb|ACIZ01000012.1| GENE 13 13717 - 14532 601 271 aa, chain - ## HITS:1 COG:lin0402 KEGG:ns NR:ns ## COG: lin0402 COG3718 # Protein_GI_number: 16799479 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized enzyme involved in inositol metabolism # Organism: Listeria innocua # 3 270 4 272 273 330 57.0 1e-90 MSLLYPKQNQEIQPGVHLIQDVNATNSPMKYTAVKVLELDAQRSFAETLGNFEAGIVILA GKVTVTVGDQRFEGIGQRQSVFDKIPTDSVYVGTDLSFKLAAQTAAKVLIAYSPTTTSFP VRLIKGDIHQIEHRGRYQNKRLVQNILPDDLPFADKLLLVEVYTDSGNWSSYPPHRHDHD NLPTESLLEEIYYHEMQPKQGFVFQRVYTDDLSLNETMTVQNQDVVIVPKGYHPVGVPDG YDSYYLNIMAGPTRVWHFHNAPEHAWIIDRK >gi|225002567|gb|ACIZ01000012.1| GENE 14 14566 - 16041 1320 491 aa, chain - ## HITS:1 COG:BS_iolA KEGG:ns NR:ns ## COG: BS_iolA COG1012 # Protein_GI_number: 16081027 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus subtilis # 7 491 4 487 487 720 69.0 0 MTTQQAVKTLKNFINGQWVDAKTDTFEDVYNPATGEVLARVPHSTSEDVADAVAAAKAAF ETWKRVSIPKRAKILFKYQQLLVEHQEELGRIVTQENGKSLSEAIAEVGRGIENVEFAAG VPTLMMGDSLSAVATDVEATNYRYPIGVVGGITPFNFPMMVPCWMFPMAVATGNTFVLKP SEKTPLTSQRLVELFQEAGLPDGVLNIVNGAVDVVNGLLDHPDVKAISFVGSERVGEYVY KRGSDHLKRVQALTGAKNHTIVLADADLDAAVKGIISSSFGSAGERCMATSVLVLEESIA DKFMAKFTQAAKDIKIGNGLDKDVFLGPVIRQENQERTLNYIKTGVKEGAKLVLDGSAEA EKRDGYFVGPTIFEDVKTDMTIWHDEMFAPVLSVMRAKDLPEAVAIANQSELANGACLFT DSAASIRYFRENIDAGMLGINLGVPAPIAVFPFSGWKHSFFGTLHANGKDSVDFYTHKKV VTARYDQHRFN >gi|225002567|gb|ACIZ01000012.1| GENE 15 16435 - 17922 1081 495 aa, chain - ## HITS:1 COG:BS_yfiG KEGG:ns NR:ns ## COG: BS_yfiG COG0477 # Protein_GI_number: 16077893 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 36 477 21 460 482 491 56.0 1e-138 MRKAGVVTNKGDAALAPQPDLGVKSEKLPKSARRRLRVISIIATFGGMLFGYDTGVINGA LPFMTRAGELNMSPSMEGLVASSLTLGAAFGAVLTGRISDRRGRHKVITGLAILFVVSTI ASALSPTAPILASVRFVLGLAVGGASVIVPTFLAEVAPSNLRGRIVTQNEFMIVSGQLLA FVFNAILGTTLGHIPGIWRWMLVLATVPAVILWIGMNFVPESPRWLAANGKLDQALTVLR QIRTEDQAQDEMEKIRISLKSEQEVQSASIKDLKIRWIRRLVLIGIGLGIMQQIVGINVM MYYGTTILQTTGFGQNAALIANILNGVTSVVATIVTMHLMGKYKRRPMLLTGIMGTLFSL IGITLTSHFLAGSPMLPYFTILLTVIYLAFFQGALGPLTWLLLSEIYPARIRGLGMGFAT FFLWIGNFFVGYFFPVMLASIGMSNTFLVFVGANIISLIFAWKFAPETAGRTLEEIELDN KFDDKFPEKSKINKN >gi|225002567|gb|ACIZ01000012.1| GENE 16 18346 - 19140 621 264 aa, chain + ## HITS:1 COG:lin0400 KEGG:ns NR:ns ## COG: lin0400 COG1349 # Protein_GI_number: 16799477 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Listeria innocua # 2 240 1 237 253 195 43.0 9e-50 MLRKERIDAMQAYISEVKTASMKELEDKFSIAPSTLRRDLATLIANGTVKKVYGGVTTTP DSTKDNPLTVYSERQLAAPSEKRQIGRAAAQLIEPEDLIFIDSGTTTAEMGEFLPTDFPF TLVTNNLQIINQAAPLANIKLVIIGMNFDRRTQSFTGIDNMNIFSRFNIGKAFMAATGIS LTRGLSNSEYNEYLIKSEIFKKAHRKILLIDQSKFGRVSLLTYGTVQDIDAIVTYGDIAA KYHEFLTENSIQLINAKTGAKTLP >gi|225002567|gb|ACIZ01000012.1| GENE 17 19297 - 20157 750 286 aa, chain - ## HITS:1 COG:L66233 KEGG:ns NR:ns ## COG: L66233 COG0656 # Protein_GI_number: 15672250 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 7 286 3 281 281 360 63.0 1e-99 MAHLTKLTDTYTLSNGVKIPIVGFGTWQTPDGEVAKHSVEAALAAGYRHIDTAAAYGNEE SVGAGIKASGVARDQIFLTTKLWNADHGYDATKAAIDRSLQKLGVDYVDLYLIHWPNPVK FRDNWEEANAGSWKAMEEAYKDGKLRAIGVSNFRAKHLDALLKTANVKPMVNQIFLNPSD LQPEVVAYNDAHDILSEAYSPLGTGKIFQVDALKKIAARYNKSVAQVVLRWSLQHGFLPL PKSVHDDRIKENTQLFDFELSHHDMTLIDALHGEAGLATDPDTTNF >gi|225002567|gb|ACIZ01000012.1| GENE 18 20304 - 21056 678 250 aa, chain - ## HITS:1 COG:L92665 KEGG:ns NR:ns ## COG: L92665 COG1794 # Protein_GI_number: 15674208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Lactococcus lactis # 1 229 1 230 240 214 45.0 1e-55 MRQFFTVIGGMGTPATESYVRLLNQRTHAHSDQEYLNYILVNDATVPDRTDYILDHSKPS FFPDLLEDVRAQSLLQPEFIVIVCNTAHYFYDQLAAASSVPLLHMPRLAIRDMCERFPNE ERIGLIATQGTIKDGIYSHEIENTGRKVILGDQALQDMVTELIYKYVKEKGEVNAELYHR ILKRMHDDFQVNVIVLGCTELSFAQEKAGDHPYHVIDAQSIIVDKTIALGKAFRKSEAAG KALLNQMMVR >gi|225002567|gb|ACIZ01000012.1| GENE 19 21062 - 22615 1400 517 aa, chain - ## HITS:1 COG:SPy0388 KEGG:ns NR:ns ## COG: SPy0388 COG0769 # Protein_GI_number: 15674533 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 34 508 38 478 481 348 42.0 2e-95 MALSLRACILLLKEHHLLKSAAIQTTEDVDMTGIAYDSRKVSGPTLFFCKGDKFRPIYLS MAKDNGARTYVAEKPYVEGNGLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGK TTAAYFTEAILNEARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENG MTHLVMEVSSQAYLRNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARK VVINAETEHFDQVYAAATTTTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFT LVPVTEKAAALNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKIPGRM EHFQVPGHGTVYVDYAHNYASMKALLSFLKRSYKDPRLLVVVGSPGDKGVSRRPGFAKVL TELATEAFLTTDDPGYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVV VVAGKGADPYQKIRGVNTPWPTDMAVVKEVTQSLQEG >gi|225002567|gb|ACIZ01000012.1| GENE 20 22813 - 23310 563 165 aa, chain - ## HITS:1 COG:PA2859 KEGG:ns NR:ns ## COG: PA2859 COG0782 # Protein_GI_number: 15598055 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Pseudomonas aeruginosa # 7 157 15 168 168 92 40.0 4e-19 MVTYHEITPAGLANLKQEVADLKAIRPAKIKNLAEAAALGDRSENAEYSAAKRELRQLEG RLRYLDKLIRYAKVTTPAAANLADIGNWVTLEFDDDQDEDTYELVGPAEAGMGAAKLAIN SPLGAAVRRHHVGDTVTVTAPSGTYQVTVMAISPHAPGKSVEQHD >gi|225002567|gb|ACIZ01000012.1| GENE 21 23675 - 24985 1163 436 aa, chain - ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 1 436 3 432 443 341 47.0 2e-93 MKKLLRGLVAAMVAVLMIGGAAPAASVAAAESSDTNLVNAKAAVAIEPTTGKVLYAKNAS TVLPIASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIWTISQDRDLSNVPLRRDGSYSV RELYDASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLKSWGITDAKIVNVTGLNNSQLK DAKVPGTGDNAENEMSAKDMAQVAQHLIKDHPEVLKTTSIAKQTFRKGTDDAINMENWDW MLKGLVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVVLHANGDAKTRRFDETK KLMTHVLENWKTITLANAGQSIKGYSKVNVNRGASRTTPIAPSAKAVAVVPADASKKTLK YTYTPAKGVKKNTIEAPVKKGTTIGNLKVTAKDDQLGFVGDNAQEGITLKTTKSNQKANF FVLIFRGIGDFFSHIF >gi|225002567|gb|ACIZ01000012.1| GENE 22 24982 - 26172 972 396 aa, chain - ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 67 375 76 379 380 202 37.0 1e-51 MSEKVKLTGKEKSELWIEGIVTVILLLMLNFALLVLINQMIAHNPGLENAIWGVKTNLTF GRGGFHLWSWSNLFLTLMGIADVIVVYWRLARRYRQMQMRHVIAELHYIADGHLDHRIKF EVNTELQKVVSSINALVDSTVNSMEEERRIEQSKDELITNVSHDIRTPLTSIIGYLGLIE DHQYRSEAELLKYTHTAYLKAKQMKVLVEDLFEYTKVKSTTTKLNPVRFNMIAMLEQLAA SFELEAHKKHMRILVSGEPNPLMMEADTEKLGRVFNNLIVNALKYGQGGRHIFLDAQRIG SEVVVKVSNDGAQIPNDALSQLFDRFYRVEESRSQETGGTGLGLAIAQSIIALHGGYIYA DSSPELTSFVIHLPLKVGASLTDKQTKSNEEAGKTK >gi|225002567|gb|ACIZ01000012.1| GENE 23 26176 - 26862 682 228 aa, chain - ## HITS:1 COG:CAC0830 KEGG:ns NR:ns ## COG: CAC0830 COG0745 # Protein_GI_number: 15894117 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 227 2 229 229 223 54.0 2e-58 MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG MDVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ NEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIF ERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVEA >gi|225002567|gb|ACIZ01000012.1| GENE 24 27006 - 27695 360 229 aa, chain + ## HITS:1 COG:no KEGG:LC705_00242 NR:ns ## KEGG: LC705_00242 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 229 1 229 229 401 100.0 1e-111 MPKLTTLVAASLPQTMQIAGINIAHSSGSTYWLLHHQDEWLTLRLATHLHWLRGVRQLQV LYSDKQTTTELQSKLRQAFASPAAQQLAFNFTATDAAIANMLLWAAAHKLVFMLRLTPAM ASAHKSRTFDLQRDFAGLPLFLGDRNNSNDLLLPIHDPLLQRHLILFYSENLLFTQFSSH RLIKLLPTAQWLQTLLTTTEHPVPWPLAIAATFGTPILTAFHRTRYQNR Prediction of potential genes in microbial genomes Time: Wed May 25 19:22:10 2011 Seq name: gi|225002566|gb|ACIZ01000013.1| Lactobacillus rhamnosus LMS2-1 contig00016, whole genome shotgun sequence Length of sequence - 83268 bp Number of predicted genes - 96, with homology - 95 Number of transcription units - 52, operones - 22 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 177 - 225 7.5 1 1 Tu 1 . - CDS 244 - 1731 1716 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 1853 - 1912 5.6 - Term 2018 - 2070 11.5 2 2 Op 1 . - CDS 2124 - 2912 734 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria 3 2 Op 2 4/0.000 - CDS 2970 - 4076 1144 ## COG0012 Predicted GTPase, probable translation factor 4 2 Op 3 1/0.100 - CDS 4099 - 4290 172 ## COG4481 Uncharacterized protein conserved in bacteria 5 2 Op 4 25/0.000 - CDS 4317 - 5189 900 ## COG1475 Predicted transcriptional regulators 6 2 Op 5 25/0.000 - CDS 5179 - 5946 790 ## COG1192 ATPases involved in chromosome partitioning 7 2 Op 6 4/0.000 - CDS 5956 - 6783 696 ## COG1475 Predicted transcriptional regulators 8 2 Op 7 . - CDS 6787 - 7518 398 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division - Prom 7573 - 7632 3.4 + Prom 7973 - 8032 4.0 9 3 Tu 1 . + CDS 8057 - 8437 491 ## LC705_00232 hypothetical protein + Prom 8531 - 8590 3.4 10 4 Tu 1 . + CDS 8617 - 9291 794 ## COG3442 Predicted glutamine amidotransferase + Term 9353 - 9394 7.1 - Term 9327 - 9390 14.1 11 5 Op 1 . - CDS 9424 - 9576 85 ## LC705_00230 hypothetical protein 12 5 Op 2 . - CDS 9619 - 10239 644 ## COG2085 Predicted dinucleotide-binding enzymes - Prom 10292 - 10351 4.6 - Term 10334 - 10371 3.1 13 6 Op 1 3/0.000 - CDS 10394 - 11041 736 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 14 6 Op 2 6/0.000 - CDS 11057 - 11971 1085 ## COG3817 Predicted membrane protein 15 6 Op 3 . - CDS 11971 - 12651 617 ## COG3819 Predicted membrane protein - Prom 12672 - 12731 7.8 + Prom 12666 - 12725 3.5 16 7 Tu 1 . + CDS 12868 - 13524 349 ## COG1011 Predicted hydrolase (HAD superfamily) + Term 13527 - 13587 8.8 - Term 13523 - 13566 6.4 17 8 Tu 1 . - CDS 13595 - 14020 534 ## COG1302 Uncharacterized protein conserved in bacteria 18 9 Op 1 . - CDS 14178 - 14588 423 ## COG1302 Uncharacterized protein conserved in bacteria 19 9 Op 2 . - CDS 14597 - 14794 277 ## LC705_00222 hypothetical protein 20 10 Op 1 . - CDS 14896 - 15435 518 ## LC705_00221 hypothetical protein 21 10 Op 2 . - CDS 15449 - 15703 347 ## COG2261 Predicted membrane protein - Prom 15876 - 15935 5.6 - Term 15912 - 15944 2.4 22 11 Tu 1 . - CDS 15948 - 16349 487 ## COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase - Prom 16384 - 16443 4.5 + Prom 16413 - 16472 3.3 23 12 Tu 1 . + CDS 16562 - 17524 769 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Term 17536 - 17594 7.2 24 13 Op 1 . - CDS 17614 - 17808 132 ## LGG_00223 hypothetical protein 25 13 Op 2 . - CDS 17805 - 18047 384 ## LGG_00222 hypothetical protein 26 13 Op 3 . - CDS 18094 - 18561 572 ## COG0716 Flavodoxins - Term 18588 - 18622 -0.7 27 13 Op 4 . - CDS 18641 - 18946 346 ## LC705_00212 hypothetical protein - Prom 18984 - 19043 6.2 + Prom 19102 - 19161 2.0 28 14 Op 1 . + CDS 19203 - 19571 88 ## LC705_00211 hypothetical protein + Prom 19599 - 19658 4.6 29 14 Op 2 . + CDS 19868 - 20074 219 ## LSEI_0191 hypothetical protein + Term 20142 - 20198 18.0 - Term 20132 - 20182 18.3 30 15 Op 1 5/0.000 - CDS 20193 - 20567 398 ## COG4272 Predicted membrane protein 31 15 Op 2 . - CDS 20567 - 21409 884 ## COG0730 Predicted permeases - Prom 21460 - 21519 1.7 32 16 Tu 1 . - CDS 21523 - 22716 929 ## COG1512 Beta-propeller domains of methanol dehydrogenase type - Prom 22890 - 22949 4.1 - Term 23005 - 23056 9.4 33 17 Op 1 . - CDS 23078 - 23710 497 ## LGG_00213 hypothetical protein 34 17 Op 2 . - CDS 23721 - 25076 1182 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 25191 - 25250 5.1 + Prom 25129 - 25188 6.2 35 18 Tu 1 . + CDS 25230 - 27068 1304 ## LC705_00203 FAD(NAD)-dependent oxidoreductase + Term 27106 - 27141 3.1 - Term 27087 - 27134 15.4 36 19 Tu 1 . - CDS 27149 - 28282 911 ## LC705_00202 hypothetical protein - Prom 28362 - 28421 6.4 - Term 28340 - 28387 6.2 37 20 Op 1 . - CDS 28425 - 28892 337 ## LC705_00201 MutT/NUDIX family phosphohydrolase 38 20 Op 2 . - CDS 28946 - 29419 310 ## LC705_00200 hypothetical protein 39 20 Op 3 . - CDS 29422 - 30090 188 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 40 20 Op 4 . - CDS 30071 - 30805 417 ## LC705_00198 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific 41 20 Op 5 . - CDS 30812 - 31516 174 ## LGG_00203 hypothetical protein 42 20 Op 6 . - CDS 31520 - 32308 374 ## LC705_00196 hypothetical protein - Prom 32346 - 32405 2.4 - Term 32839 - 32893 16.5 43 21 Tu 1 . - CDS 32919 - 34541 1491 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 34562 - 34621 5.2 - Term 34759 - 34813 14.1 44 22 Tu 1 . - CDS 34849 - 37230 1998 ## COG3957 Phosphoketolase - Prom 37255 - 37314 4.6 + Prom 37284 - 37343 3.0 45 23 Op 1 . + CDS 37491 - 37637 219 ## LC705_00193 hypothetical protein 46 23 Op 2 . + CDS 37651 - 37824 127 ## LC705_00192 hypothetical protein + Term 37843 - 37896 17.6 + Prom 38012 - 38071 8.9 47 24 Op 1 . + CDS 38232 - 38876 198 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 48 24 Op 2 . + CDS 38869 - 39363 260 ## LC705_00190 hypothetical protein 49 24 Op 3 . + CDS 39385 - 39603 202 ## LC705_00189 hypothetical protein + Prom 39622 - 39681 5.1 50 25 Op 1 . + CDS 39720 - 40199 244 ## LC705_00189 hypothetical protein 51 25 Op 2 . + CDS 40186 - 40827 263 ## LC705_00188 hypothetical protein 52 25 Op 3 . + CDS 40887 - 41525 138 ## LC705_00187 hypothetical protein + Prom 41529 - 41588 6.2 53 25 Op 4 . + CDS 41609 - 43057 1097 ## COG0477 Permeases of the major facilitator superfamily 54 26 Tu 1 . - CDS 43072 - 43791 683 ## COG2231 Uncharacterized protein related to Endonuclease III - Prom 43877 - 43936 5.5 + Prom 43840 - 43899 3.8 55 27 Tu 1 . + CDS 43949 - 44773 682 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases + Term 44844 - 44876 -0.2 56 28 Tu 1 . - CDS 44919 - 46256 1375 ## COG3037 Uncharacterized protein conserved in bacteria - Term 46318 - 46352 3.1 57 29 Op 1 1/0.100 - CDS 46368 - 47237 893 ## COG0191 Fructose/tagatose bisphosphate aldolase 58 29 Op 2 . - CDS 47249 - 48745 1236 ## COG1070 Sugar (pentulose and hexulose) kinases - Prom 48932 - 48991 4.5 + Prom 48818 - 48877 7.0 59 30 Tu 1 . + CDS 48912 - 49664 435 ## COG1349 Transcriptional regulators of sugar metabolism + Term 49712 - 49759 4.1 - Term 49700 - 49747 12.5 60 31 Op 1 . - CDS 49812 - 51002 1116 ## COG0282 Acetate kinase - Prom 51195 - 51254 1.8 61 31 Op 2 . - CDS 51278 - 52624 1097 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase - Prom 52648 - 52707 5.8 + Prom 52662 - 52721 4.3 62 32 Tu 1 . + CDS 52917 - 53243 404 ## LC705_00177 hypothetical protein + Term 53276 - 53317 6.1 - Term 53263 - 53304 6.1 63 33 Tu 1 . - CDS 53327 - 54313 671 ## LC705_00176 membrane protein - Prom 54337 - 54396 9.9 - Term 54463 - 54502 3.7 64 34 Op 1 . - CDS 54506 - 55969 1080 ## LC705_00175 hypothetical protein 65 34 Op 2 . - CDS 55980 - 56201 69 ## LC705_00174 hypothetical protein - Prom 56221 - 56280 2.5 66 35 Tu 1 . - CDS 56282 - 57361 935 ## LC705_00173 cell surface protein 67 36 Op 1 . - CDS 57503 - 58309 816 ## LC705_00172 cell surface protein 68 36 Op 2 . - CDS 58312 - 58629 297 ## LGG_00182 extracellular protein 69 36 Op 3 . - CDS 58647 - 60608 1154 ## LC705_00170 hypothetical protein - Prom 60681 - 60740 13.8 70 37 Tu 1 . - CDS 61029 - 61115 56 ## - Prom 61247 - 61306 3.2 + Prom 60996 - 61055 4.5 71 38 Tu 1 . + CDS 61092 - 61667 481 ## LGG_00180 alanine acetyl transferase + Term 61713 - 61765 0.1 - Term 61702 - 61750 9.3 72 39 Tu 1 . - CDS 61839 - 62135 292 ## LC705_00168 hypothetical protein - Prom 62234 - 62293 5.3 + Prom 62238 - 62297 5.3 73 40 Tu 1 . + CDS 62326 - 63303 788 ## COG0346 Lactoylglutathione lyase and related lyases + Term 63348 - 63385 7.1 74 41 Tu 1 . - CDS 63379 - 63702 311 ## COG1416 Uncharacterized conserved protein - Term 63743 - 63806 1.2 75 42 Tu 1 . - CDS 63838 - 65295 1380 ## COG2252 Permeases - Prom 65317 - 65376 7.2 76 43 Op 1 . + CDS 65489 - 65839 346 ## LC705_00164 hypothetical protein 77 43 Op 2 . + CDS 65881 - 66249 389 ## COG3759 Predicted membrane protein 78 43 Op 3 . + CDS 66295 - 66591 239 ## LC705_00162 hypothetical protein + Term 66606 - 66648 6.6 - Term 66587 - 66643 10.1 79 44 Op 1 3/0.000 - CDS 66665 - 67402 480 ## COG2188 Transcriptional regulators - Prom 67451 - 67510 7.1 - Term 67533 - 67578 5.4 80 44 Op 2 8/0.000 - CDS 67625 - 69061 967 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 81 44 Op 3 . - CDS 69107 - 70471 1142 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 82 44 Op 4 . - CDS 70494 - 70988 321 ## LC705_00158 PTS system cellobiose-specific transporter subunit IIC 83 44 Op 5 8/0.000 - CDS 71008 - 71331 416 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 84 44 Op 6 . - CDS 71341 - 71655 351 ## COG1440 Phosphotransferase system cellobiose-specific component IIB - Prom 71753 - 71812 4.5 - Term 71879 - 71911 2.1 85 45 Tu 1 . - CDS 71937 - 72938 988 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 72971 - 73030 3.8 86 46 Tu 1 . - CDS 73044 - 73535 454 ## COG0350 Methylated DNA-protein cysteine methyltransferase - Prom 73651 - 73710 3.9 87 47 Op 1 40/0.000 + CDS 73739 - 74413 531 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 88 47 Op 2 . + CDS 74410 - 75477 872 ## COG0642 Signal transduction histidine kinase + Prom 75479 - 75538 2.2 89 48 Op 1 . + CDS 75604 - 76110 488 ## LC705_00151 hypothetical protein 90 48 Op 2 . + CDS 76174 - 77595 1060 ## COG0477 Permeases of the major facilitator superfamily 91 48 Op 3 . + CDS 77613 - 78257 451 ## LC705_00149 hypothetical protein + Term 78307 - 78356 5.1 92 49 Tu 1 . - CDS 78687 - 78950 219 ## LC705_00148 hypothetical protein - Prom 79047 - 79106 3.1 + Prom 79104 - 79163 4.8 93 50 Tu 1 . + CDS 79243 - 80325 1041 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes + Term 80342 - 80394 10.1 - Term 80328 - 80380 10.1 94 51 Tu 1 . - CDS 80455 - 80706 240 ## LC705_00146 hypothetical protein - Prom 80866 - 80925 7.5 + Prom 80708 - 80767 3.6 95 52 Op 1 . + CDS 80964 - 82040 1001 ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF + Prom 82052 - 82111 2.3 96 52 Op 2 . + CDS 82141 - 83121 657 ## COG0671 Membrane-associated phospholipid phosphatase + Term 83169 - 83207 8.4 Predicted protein(s) >gi|225002566|gb|ACIZ01000013.1| GENE 1 244 - 1731 1716 495 aa, chain - ## HITS:1 COG:SPy2206_3 KEGG:ns NR:ns ## COG: SPy2206_3 COG0516 # Protein_GI_number: 15675939 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pyogenes M1 GAS # 208 495 1 286 286 447 81.0 1e-125 MSNWDTKFARRGFTFDDVLLIPAESHVLPHDVDLSVQLADNLKLNIPIISAGMDTVTESA MAIAMARQGGLGVIHKNMSIEAQADEVLKVKRSENGVIVDPFFLTADKPVSDAEALMKKY RISGVPIVNNTTDRKLTGIITNRDLRYVDDKSVLIDTVMTKEGLVTAPAGTSIEDAEAIL QARKIEKLPLIDKQGRLSGLITIKDIEKVVEFPHAAKDAHGRLLVAAAVGVTSDTFERAQ ALLDAGVDAIVIDTAHGHSAGVIRKIKEIREHFPLATLIAGNVATAEATEALYDAGVDVV KVGIGPGSICTTRIVAGVGVPQLTAVYDAASVARKRGKTIIADGGIKYSGDIVKALAAGG NAVMLGSLLAGTDEAPGQFEIYQGRRFKTYRGMGSLGAMAQAHGSSDRYFQSGVNEANKL VPEGIEGRVAYKGSLGDVIFQMLGGIESGMGYVGAPNLQELQDNAQFIQITGAGLRESHP HDVQITREAPNYSVQ >gi|225002566|gb|ACIZ01000013.1| GENE 2 2124 - 2912 734 262 aa, chain - ## HITS:1 COG:SPy1828 KEGG:ns NR:ns ## COG: SPy1828 COG4858 # Protein_GI_number: 15675655 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 56 258 3 211 218 87 29.0 2e-17 MAEKHEADTSQAVDSAAVDQQQAAGGTSEASSATDAASKNAHVKQVRPASTVPEMIEQLT KKNDEYVFKLRRELKDGGMSATDEETLLKTMLPEMITAQRQGKPATQLYGPVTVKANEIL HTPKPEPKKPMWLLIVDQSLFFMAILAVMYGALAYFNPKTQNTATSGFLSLLLLSFMAGI FFVYYADWMQKDKKERRSAWLVLGGGVLLVVAVTFLSSALALLNTPLTQPMPWFANIIVG VVAYGIHWVLQHRYHLKSFFQR >gi|225002566|gb|ACIZ01000013.1| GENE 3 2970 - 4076 1144 368 aa, chain - ## HITS:1 COG:SP0004 KEGG:ns NR:ns ## COG: SP0004 COG0012 # Protein_GI_number: 15899953 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pneumoniae TIGR4 # 1 368 1 371 371 507 73.0 1e-143 MALTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIDPNVGMVEVPDKRLARIDELIPA KKIIHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITSVTGKVD PLEDMATINMELAIADLDSVNKRYAKVEKVARTQTNDKEAQAEFKVLQKIKPVLENGGMV RSIDFDKDEQKIVKGLFLLTSKPVLYVANIAEEAMADPDSVDYVKQIKAEAAKEGAEVIA ISAKTEEEIAELDDDEKADFLAAEGVDESGLDKLIKASYHLLGLATFFTAGGKETRAWTF RRGMKAPQVAGIIHSDFERGFIRAETMSFADLDKYGSVQAVKEAGRYRSEGKEYEVQDGD IIEFRFNV >gi|225002566|gb|ACIZ01000013.1| GENE 4 4099 - 4290 172 63 aa, chain - ## HITS:1 COG:lin2921 KEGG:ns NR:ns ## COG: lin2921 COG4481 # Protein_GI_number: 16801980 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 61 6 65 65 81 58.0 4e-16 MYQLHDLVQMKKPHACGTNRWEIIRLGADIKVRCTGCGHIVMMSRRDFEKRLKKVLGQAE QTD >gi|225002566|gb|ACIZ01000013.1| GENE 5 4317 - 5189 900 290 aa, chain - ## HITS:1 COG:BS_spo0J KEGG:ns NR:ns ## COG: BS_spo0J COG1475 # Protein_GI_number: 16081148 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 6 285 2 277 282 279 56.0 4e-75 MANKNSKGLGRGIDAIFKDFESPDLSANNTVEELPLVDIRPNPYQPRKTFDQEGLKELAD SIKQTGVFQPIIVRKSVSGYEIITGERRFRASKLAGKETIPAIVRDFNDPEMMEIAVLEN LQREDLTPLDEAQAYDTLIKRLNLTQAEVSARLGKSRPYIANYLRLLTLPQPVKQMLSAN QLSMGQARTLLSLKDKTKMVAVAKKTISENLTVRQLERLINQMNAGTNRPATKEKPKSPY VRATENQLGERFGTKVNINEGSKGKGKIEIDFSSEKDLNRILAMLDVNID >gi|225002566|gb|ACIZ01000013.1| GENE 6 5179 - 5946 790 255 aa, chain - ## HITS:1 COG:BS_soj KEGG:ns NR:ns ## COG: BS_soj COG1192 # Protein_GI_number: 16081149 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus subtilis # 1 251 1 251 253 336 68.0 3e-92 MTHIIAVANQKGGVGKTTTTINLGACLANLGKKILIVDADAQGNATSGVGIQKAQVEKDI YDVLVNEDPITEAILPTKHKNLFIVPATIQLAGAEIELTSQMAREMRLKLGLHPVAEQYD YILIDCPPSLGQLSINAFTASDSILIPVQSEYYALEGLSQLLNTVRLVQKHFNPSLAIEG VLLTMYDARTNLGAQVIDEVRKYFGDKVYTTVIPRITRLAEAPSYGLPIVDFDPKSRGSE VYEALAKEVLAAHGE >gi|225002566|gb|ACIZ01000013.1| GENE 7 5956 - 6783 696 275 aa, chain - ## HITS:1 COG:lin2926 KEGG:ns NR:ns ## COG: lin2926 COG1475 # Protein_GI_number: 16801985 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 17 274 26 284 284 239 54.0 4e-63 MALSFFGHKKSDDETVVQQLPLKAIVPNQFQPRKVFTSESIQELAATIKEHGLLQPIIVR EYAPDQYEIIAGERRYRAMQLLGWEKAPAIVQKMDDDESASMALVENLQREGLSAIEEGQ AYVALMKLNHLTQGALAQQLGKSQAFVANKIRLLKLSAPVQEAIMNGQISERHGRELLKL DESEQVPALQQVFAEKLTVKETAALVNERLRPKKPTPKPKPKVRRSAVSHDTRIAWNTLK RSVKMIRDTGMTVTAKEEDTDDAYRMIIEIPKEKR >gi|225002566|gb|ACIZ01000013.1| GENE 8 6787 - 7518 398 243 aa, chain - ## HITS:1 COG:SA2499 KEGG:ns NR:ns ## COG: SA2499 COG0357 # Protein_GI_number: 15928295 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Staphylococcus aureus N315 # 10 240 10 236 239 264 58.0 1e-70 MDPTAFVHALADHGIVLNDHQQDQFAAYYQYLISENEKMNLTGITAEGDVYLKHFYDSLT LGLVVPKLQSQPLSLCDVGAGAGFPSIPLKIAFPQLKITIVDSLQKRIGFLERLTARLEL TDVQLFHDRAETFGAKKSPHRGQYDLVTARAVAALNVLAELCLPLAKQHGQFVAMKAAAT PEELIAAKPAINLLGGKLVQDAALTLPETGDTRHLLVIEKVKPTPNKYPRKPGMPNKQPL GGA >gi|225002566|gb|ACIZ01000013.1| GENE 9 8057 - 8437 491 126 aa, chain + ## HITS:1 COG:no KEGG:LC705_00232 NR:ns ## KEGG: LC705_00232 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 126 1 126 126 200 100.0 1e-50 MELDGKEIKENEQLTDAQLTELHQQYQALWDKLKKDNYKTDHQFMEVLYEEPDNIQNYEA AFFTYQIRKDTGDNQFDQLNIILNNKPTFHDQPDEFVFEISDYSDMDAIYQAIEEKAQPW IKAHKR >gi|225002566|gb|ACIZ01000013.1| GENE 10 8617 - 9291 794 224 aa, chain + ## HITS:1 COG:SPy1034 KEGG:ns NR:ns ## COG: SPy1034 COG3442 # Protein_GI_number: 15675031 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 5 223 18 234 263 187 48.0 1e-47 MADTIKIAYLYEDLMNTYGDSGDVKILRYLLNQQGYQVQVDNISLGDDFNADDYDFIFFG GGQDYEQTVVAKDLLRYAQTLGRYIENGKPMLAICGGYQLLGDYYKTSEGTVIKGLGILP LHTVFKPDSRMIGDTKYETEFGTVKAFENHSGRTYFDDKNKLKPLGKMIEGYGNNPEDGV EGMRYKNTIGSYSHGPVLKNQNIAKAIAKMIVANHKKRIGQPVQ >gi|225002566|gb|ACIZ01000013.1| GENE 11 9424 - 9576 85 50 aa, chain - ## HITS:1 COG:no KEGG:LC705_00230 NR:ns ## KEGG: LC705_00230 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 50 1 50 50 72 100.0 4e-12 MIFFYGILFIIALTFLWVISTSEYARLVQEGKSRPRAFVSALLLGWMSIF >gi|225002566|gb|ACIZ01000013.1| GENE 12 9619 - 10239 644 206 aa, chain - ## HITS:1 COG:mll0243 KEGG:ns NR:ns ## COG: mll0243 COG2085 # Protein_GI_number: 13470516 # Func_class: R General function prediction only # Function: Predicted dinucleotide-binding enzymes # Organism: Mesorhizobium loti # 1 192 1 194 231 126 45.0 2e-29 MSIGIIGSGNVGRALGQLFSHVGEQVILSHRHGVASLAPVIAEMRSTVEAGTVAEAANQD IVVLAVPFNALDELPAQVKADAVVIDATNYFPSRDGERSELTSHQIASSQLVAQHFGTKK VVKAFNTIAMTKIRSLAKPNQPAGRIAIPIAGDDAAAKKTVTALIEKIGFDVVDLGDLAN SYPAQADGPLFLFTGDADQVRAQANK >gi|225002566|gb|ACIZ01000013.1| GENE 13 10394 - 11041 736 215 aa, chain - ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 215 1 214 214 252 59.0 4e-67 MKILVTGFDPFGDDKINPAIEAVKRLPDEIGGAKIVKLEIPTKFNVSAEVVHDAIVKEKP DYVLSIGQAGGRYELTPERVAINLDDGRIKDNAGYQPLNHTIHEDGENAYFTQLPIKAMA KAIREAGVPAAVSNTAGTYVCNHIFYQVQYMRDKEFPTIKAGFMHIPFLPEQVVARPETP ALSLEDDVKGITAAIAAIVAHDGKDDLETVEGKNH >gi|225002566|gb|ACIZ01000013.1| GENE 14 11057 - 11971 1085 304 aa, chain - ## HITS:1 COG:SP0859 KEGG:ns NR:ns ## COG: SP0859 COG3817 # Protein_GI_number: 15900743 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 304 4 307 307 231 44.0 9e-61 MVDTLLLILYALIGVVMAIAGIEAFRAKDNPARIGTGLFWIIMAIVFAFGTLLPAMVVGI LVVIIGILALFKQIQIGKIKPVDGAHAAQAAKRLGGWVFVPSVVLAIVSIAVAQFTKLGG QVGIGIGAAVSLIVAIIMTKAPVKMVYNDTQRMVRSVGAAGILPQLLATLGAVFTAAGVG TLTAKLIAGLFPAGSHLGGVILYCVAMALFTIIMGNAFAAFAVITAAIGIPFVIAQGANP AIVAAIGMTSGYCGTLLTPMAANFNSLPVALLEMEDPLGVIKQQAPIAILLLVIQIGLMY FLAF >gi|225002566|gb|ACIZ01000013.1| GENE 15 11971 - 12651 617 226 aa, chain - ## HITS:1 COG:SP0858 KEGG:ns NR:ns ## COG: SP0858 COG3819 # Protein_GI_number: 15900742 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 226 1 228 229 202 48.0 3e-52 MEYLKLLGIVIIVVGFALKWDTTAVVVLAAIVTAVFSGMSIPDLLTTLGQSFVDNRMVSL FFLTLPMIGLVESHGLKEVAVNGIQKLKKLTPSRILNLYLVIRELGGVFGISLSGQVQFV RPLITPMVTAAAEAKRKLTDKEIDLIKARSAATDNFGNFFAQNLFVATAGVLLIASTMKS LKHPVEPMQVVLASIPIAIITLVVVAVYNRWFDRQFEETPRKGGKK >gi|225002566|gb|ACIZ01000013.1| GENE 16 12868 - 13524 349 218 aa, chain + ## HITS:1 COG:CAC1776 KEGG:ns NR:ns ## COG: CAC1776 COG1011 # Protein_GI_number: 15895052 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Clostridium acetobutylicum # 3 189 5 193 217 172 40.0 4e-43 MDITFDCYGTLLDTRPIRTQFMTFSARHGIDGQAAWHQFESWEDRLMYGETTLPFTTLLK RDLQYLDMTFRTNSLFSHYFHDLFESYINLQPWPEVIPALQQLRQAGHRIIIMSNSTPDL MTHHFDQLEHQVDQAILPEQTHCYKPTLSFFTTAETRLNQPHLHVAMGYWWDIVPCHKLG WPCVWINRQQLSPLPDITPTYSLPNLTELPALVEKIAS >gi|225002566|gb|ACIZ01000013.1| GENE 17 13595 - 14020 534 141 aa, chain - ## HITS:1 COG:SA1984 KEGG:ns NR:ns ## COG: SA1984 COG1302 # Protein_GI_number: 15927762 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 121 33 149 169 76 39.0 1e-14 MDNKKPNGINKELKFDDAVIAKIVGITCNEVEGVYSLEGGMMANLTDMFSKDEDPTKGVN VDLSDNQDVSVTLDATVRYGENVPEIFNKVTMAIAKNVRQMTGLNVTEVKMTVKNMLTKE EIARNEAKNSDKNSDKELQPA >gi|225002566|gb|ACIZ01000013.1| GENE 18 14178 - 14588 423 136 aa, chain - ## HITS:1 COG:SA1984 KEGG:ns NR:ns ## COG: SA1984 COG1302 # Protein_GI_number: 15927762 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 23 136 40 153 169 112 50.0 2e-25 MDAVAPPKPASVASHQETLMANSRLTFEDKVVEKIAAICAQNVDGILGMDGSVMDNLTET FSSGENLTKGISAEVGEKQVALDMDVFLEFDSNAQAIFKQLCEKISAQIERMTGLQLVEL NMHVKDVLTKREWQKR >gi|225002566|gb|ACIZ01000013.1| GENE 19 14597 - 14794 277 65 aa, chain - ## HITS:1 COG:no KEGG:LC705_00222 NR:ns ## KEGG: LC705_00222 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 65 1 65 65 101 100.0 9e-21 MQQGTIGAVVGVILAFAWMRFGFMGMLLVLIFGGLGWLIERYLVPNWATFTSWLTAGKDA FSKGK >gi|225002566|gb|ACIZ01000013.1| GENE 20 14896 - 15435 518 179 aa, chain - ## HITS:1 COG:no KEGG:LC705_00221 NR:ns ## KEGG: LC705_00221 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 179 1 179 179 332 100.0 4e-90 MKPITKVLFGIVAICGLLQSIGFGLLLWPNREFTRFYVQQAGWLRPVMIGLTGLVILAFA IMLLVAIFRRSTANALILAGDDGDLTLDKSAIENTVAKAIVDRHFAKSVDVDVSIRKKQV ARMRIEAFSGNVKELKQEAQRIEETARQKLQACLGVPVKHVRVHLLPATKVKAKTARVI >gi|225002566|gb|ACIZ01000013.1| GENE 21 15449 - 15703 347 84 aa, chain - ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 80 1 80 82 64 57.0 4e-11 MHLIWTLIIGAVIGCIGQLIVGRDMPLGWIGNIIGGLIGAWLGTALLGSWGPSLAGMALI PAIIGAIIVVFLVSLLLGTTRRKA >gi|225002566|gb|ACIZ01000013.1| GENE 22 15948 - 16349 487 133 aa, chain - ## HITS:1 COG:SPy0844 KEGG:ns NR:ns ## COG: SPy0844 COG3576 # Protein_GI_number: 15674878 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase # Organism: Streptococcus pyogenes M1 GAS # 4 131 2 128 133 95 41.0 3e-20 MATLTQDMKDMIGAQLNYLATADENGNPQVGPKGTMRVLDDHHLIYNEETGKQAWHNLQY SKKAAVATVDYKALKGFRFEGTVEFHNDDQIFEDAQAFAKERHLPAAISAVVINVDRIYK LDAGPSAGDLIEG >gi|225002566|gb|ACIZ01000013.1| GENE 23 16562 - 17524 769 320 aa, chain + ## HITS:1 COG:lin0070 KEGG:ns NR:ns ## COG: lin0070 COG1052 # Protein_GI_number: 16799148 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Listeria innocua # 2 318 3 317 318 295 50.0 1e-79 MAQVYISATLPKSANNALKRAGVDFEAYRGKGLITEAELQAHLSDAKVLITALSTPVSAA TLAKAPHLKLIANYGAGFNNIDITAAKAHGVLVTNTPKVSTTSTAEVTLALMLAVLHRVT EGDRLMRGPGFSGWAPTFFLGHELAGKTVGIIGMGQIGQAVAKRVHAFDANILYTQHHQL PSEKEQSLGATFTDQATLLQQSDLVTLHLPLVPATHHLLDAQALATMKPSAYLINAARGP LIDEAALLEQLTAHRLAGAALDVYEAEPHVSSELKALDNVVLTPHIGNATVEARDAMAKI VTDNTLAILSGKQPRYIVND >gi|225002566|gb|ACIZ01000013.1| GENE 24 17614 - 17808 132 64 aa, chain - ## HITS:1 COG:no KEGG:LGG_00223 NR:ns ## KEGG: LGG_00223 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 64 1 64 64 93 100.0 2e-18 MTKTVWYRVALVVVAVILIGVLYGLMQQEQIANPFLVGSLGLILGVDLALLLANLWPVHH SRKP >gi|225002566|gb|ACIZ01000013.1| GENE 25 17805 - 18047 384 80 aa, chain - ## HITS:1 COG:no KEGG:LGG_00222 NR:ns ## KEGG: LGG_00222 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 80 1 80 80 138 100.0 7e-32 MSEEIVFFNPGDAVANDFDFAAARRSAQIYKAQHVVDEGLVVAKDKDGKYSVFYEAAGTP DSQAKGAYKDVGKYTILAHL >gi|225002566|gb|ACIZ01000013.1| GENE 26 18094 - 18561 572 155 aa, chain - ## HITS:1 COG:SP1297 KEGG:ns NR:ns ## COG: SP1297 COG0716 # Protein_GI_number: 15901157 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pneumoniae TIGR4 # 3 147 4 145 147 89 33.0 3e-18 MKAIILYASITGNAKGMARIEQQFFEHYGWDVTLGEMIQTDPATIKDFDVLVLATYTWTG GVIPEETQDFYDDLSKLDFSAKPLVFGVLGTGDPYYGKDYNTAPEKFEAVLKASGAVQGA TAVKIALNVKQEEMPQFATFTQSLIKKTEALQNKK >gi|225002566|gb|ACIZ01000013.1| GENE 27 18641 - 18946 346 101 aa, chain - ## HITS:1 COG:no KEGG:LC705_00212 NR:ns ## KEGG: LC705_00212 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 101 1 101 101 187 100.0 1e-46 MEHYAYLQDLAANQRDRELRVRIWDNKNVIIRRNLSQHQGLATQVWDAWLRQELRRFNGF EPIIEVDDFSGHQEIKFFKENELADAVHFILQGEGAVETAS >gi|225002566|gb|ACIZ01000013.1| GENE 28 19203 - 19571 88 122 aa, chain + ## HITS:1 COG:no KEGG:LC705_00211 NR:ns ## KEGG: LC705_00211 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 122 8 129 129 205 100.0 4e-52 MLWGLFIFGITLISLFATPTALFNQLITDATALLWNPLMLTLQASTFHSTSNGWLWLLLI SFWFIILKVLLKGIQLVKKRKLYQQLVTGQAYIVAIGSRRVFYDRDHHAYELTHHPLKWW HS >gi|225002566|gb|ACIZ01000013.1| GENE 29 19868 - 20074 219 68 aa, chain + ## HITS:1 COG:no KEGG:LSEI_0191 NR:ns ## KEGG: LSEI_0191 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 68 1 68 68 108 100.0 5e-23 MAEKDQISAFSREIIDFQRKNHLTDTEMALNSHVSVEHIHNIKSMREMPDSSVVATLKDY MEHKPSGK >gi|225002566|gb|ACIZ01000013.1| GENE 30 20193 - 20567 398 124 aa, chain - ## HITS:1 COG:L83104 KEGG:ns NR:ns ## COG: L83104 COG4272 # Protein_GI_number: 15674199 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 6 122 8 124 125 96 55.0 1e-20 MDKKLKTEIDDVEIMIGKVMQIGVILAAVVIIFGLILLLVSGSTGYPAGVHPTRIGAIIS GTVALKPYAILMTGIFLLILTPVLRVVVSIYAFAVEHDHLYVWITTAVLIILLGAMTIGY LGNR >gi|225002566|gb|ACIZ01000013.1| GENE 31 20567 - 21409 884 280 aa, chain - ## HITS:1 COG:lin2503 KEGG:ns NR:ns ## COG: lin2503 COG0730 # Protein_GI_number: 16801565 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Listeria innocua # 30 277 32 277 279 262 64.0 5e-70 MEQMLLLMGTGLLGGILGAVLGIGGGMIITPILTMLMGLPIQYAIGASIVSVIATSSGAT IAYLKDEMLNLRVAMFLEIATTVGAVIGAVITGLVNGKVLYILFGALLIFSAFNMIRKLR MKDDGVRQTTPDAMATKLRLNGTYFDKATGKEVNYTVTNVPGGFAMMFGAGIASGLLGIG SGAFKVIAMDTIMHMPLKPSSATSNLMMGVTAAASATVYYFGGQLQPQIAAPLAIGILVG ATVGSRVMQVLPNKVLRLIFIPVIGYMGIQMALKGFGVNI >gi|225002566|gb|ACIZ01000013.1| GENE 32 21523 - 22716 929 397 aa, chain - ## HITS:1 COG:BMEI0229 KEGG:ns NR:ns ## COG: BMEI0229 COG1512 # Protein_GI_number: 17986513 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Brucella melitensis # 3 110 38 142 253 69 34.0 9e-12 MGSESKTVIKKLNDQTFAKITGHPQIAVITVTSLHDDEIEDYANEQFAKLGIGKKGWDNG LLLVLSRRDRKYWLEVGYGLEDVVPDGSADEIVTGSVKKLLKAEDYDHAIALFLTNIGKR VAAHQSAIATPTQIKAKRAHDAAVKQLLITVALVVVGMMVLFFIIHAAITARLRDTMRHV AAMQTLPIYAAVTAAGIKLQLDTAAVPLFRFAWSHDKLRVIGMANLTRRGFESWTRKVRM MVPHPYWYYDNVRGALRKLPDQTLVNAPTIAAVAELLSPALADRFKTGQPYEAAFTAWLN EQKSVAGQAAVTTWSKFLAKVKPTDTFSDATLAATFSAILFHIRHPDQDQDLSQSDVPLW VISDFGSATSSHSGDSDDFGSGFGGGSSGGGGFGGSW >gi|225002566|gb|ACIZ01000013.1| GENE 33 23078 - 23710 497 210 aa, chain - ## HITS:1 COG:no KEGG:LGG_00213 NR:ns ## KEGG: LGG_00213 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 210 1 210 210 420 100.0 1e-116 MNSWNLIGLFAWVILIAYLFFIIWHIRRRHIKAIVKSGRQVSPSVVLVDLVEVAVLLLAV AGMVWVSWLRPIDYRDSHEVTISHSAQPLILQTGDEHSFYVRVRTGNGKNPILYYTYWTE GAKYENTSHNAEVSSGSQPLTPRAAAYPWSKKELKKLDQSADRAYVATVSAQYKPGFLNG LGMHVGHSADRFSILRVPNDTFVEIDPVED >gi|225002566|gb|ACIZ01000013.1| GENE 34 23721 - 25076 1182 451 aa, chain - ## HITS:1 COG:SPy1150 KEGG:ns NR:ns ## COG: SPy1150 COG0446 # Protein_GI_number: 15675127 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 2 437 3 449 456 271 35.0 2e-72 MKVVVVGCTHAGTAAVRELLMRHPETEVDVFERREDISFLSCGIALYLEGTVGRLEDMFY ATPASLEALGPNVHVHLKHDVLSIDGAGHVIVAEDLKTGTQQHYPYDKLIMTTGSYPVIP PVSGVSVPRVLMCKSYDDARKIKESAKDAETIAIVGGGYIGVELAEAYSRNQKHVILING VAPLLSHYVDLPLSREISSVLTEHGVELKVNTVARHFDSDAEHVFIQTDHGEIQADLAVV CVGFRPMTELLVGQVKMNHDGSIHVNDYMQTSDPDIFAAGDAVAVHFNPTGKDAYAPLAT NAVRQGKMAGANIFGPTIKYMGTQATSALRLYDHSLAVTGLTLAHAKRNQLPAASVTMVD DFRPPFMPHTVKITMVLVYDTSNRQILGAQFYSKYDVANAANLISVMIQNRNTIDQLAYV DMLFNPNYDKPWHYLNLLGQLAVAQADNSAV >gi|225002566|gb|ACIZ01000013.1| GENE 35 25230 - 27068 1304 612 aa, chain + ## HITS:1 COG:no KEGG:LC705_00203 NR:ns ## KEGG: LC705_00203 # Name: not_defined # Def: FAD(NAD)-dependent oxidoreductase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 612 1 612 612 1219 100.0 0 MHITLIGAGPRGLMLLGRLISWQRTRYPQRQLTVFLVDPYPIGGRVWKIDQDPNLIMNTA AAQITLFTDQTVTGVGPFIAGPDLSTWALTLAADYLDAHPEINNRSILMRQAANLGPNSY ASRALYGVYQQWFFDLQKHQAGTNIITYKQQTVNRLDKKAAGFTITTTQESWQTDQVVMA LGNLKNSLTRDQKALHDYAQTHQLFYLEPGFPEEGDLSGIEAQSPVIIRGLGLSFFDLMS RLTEGRGGQFQKAPDGLLVYHPSGREPHIFAGSRRGFPYRAKGRNQKGPGEEWQPHFLTP QQIDAWQTHGEVSGQTFWEALQHEAELIYYRLLLPQRYPEIDEAAFERDFIADPVATLGA LPIAAKDRLDWDALADPTKAHPSGQPYQDFMRHYLRQDAQEAMRGTKTGPLTSALEVLRD MRDPIRQLVERNLLSQDQYLDFFLRWFNSLNDFLSIGPPALRIDQLQALMGAGIVTILPP GMQIKGIDGQFLLKTPSDPKFSLQAKTLLEARVPAVNAPTAQNPLVQQLLHDGYAHTYEL QLNADKRFQSGAIAIDRQTQQLLDQKEHPQAGLFFWGVPTEGVHWLTTASPRPLVNDVSL KTAEQIVKVIFG >gi|225002566|gb|ACIZ01000013.1| GENE 36 27149 - 28282 911 377 aa, chain - ## HITS:1 COG:no KEGG:LC705_00202 NR:ns ## KEGG: LC705_00202 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 377 1 377 377 743 100.0 0 MDITTRPTLQQFLADTKQGPYVSLYMSWPEHTPVEKLRIRFKNMLKHVKTVMAETYSGTD FAPYAAELEPYEQDPMFWQDSEANGIGMLTNGAQTYVTPMYEAVDEVAMVTEVPQILPLM LDEATATDFDILALNADSIQLYHNHGHQVRPVSLPDDAPQTLKGTLGTEIRGGELNSVSQ GGGHVTYHGHNEKSAEKASDQRRFYQAVDQYLLTNYSNPKKMPLVLMGLAENVAVFREIS KNHHLLPKLAVVKSPATLDFVELDDLLEPVRATLRDRRRQHFANVIENARGNGSYTDELA TIVSAALRGQIAILFVQAGARIHARLEGDQIERDSKAAQHANLLNTLADIVLGHGGQVEL LPEAHLSAKVGATMRYA >gi|225002566|gb|ACIZ01000013.1| GENE 37 28425 - 28892 337 155 aa, chain - ## HITS:1 COG:no KEGG:LC705_00201 NR:ns ## KEGG: LC705_00201 # Name: not_defined # Def: MutT/NUDIX family phosphohydrolase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 155 1 155 155 281 100.0 4e-75 MVQEIDDLRFQLSPHAKFDFRAAVLLVHDNQVLVTVQPTSGVAIVPGGAVKFGETSGVAA KRELYEELRLQVDEPPLVGVLESFWQQPDRTYQQLIMVHRLVLSQAQIDELVWQEGLQGQ WLPKSEVAKHLQPRALAQFLEPSATLLHLVDRHSE >gi|225002566|gb|ACIZ01000013.1| GENE 38 28946 - 29419 310 157 aa, chain - ## HITS:1 COG:no KEGG:LC705_00200 NR:ns ## KEGG: LC705_00200 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 157 1 157 157 271 100.0 7e-72 MKPAHRRIYFLIGGCSTVMIILVGLFVWRYQTLNVNVAQPAVCTRRLRLPAKVVLNQTTV VLEKLETKVTNGRWRVRLVFKRAITKQNLKHIRIQIAQHREGSEVANEQLAVMSRDKKVL TLTDTYYSQAKYNRVVMTTLPRVARSQNLVQIVTFKE >gi|225002566|gb|ACIZ01000013.1| GENE 39 29422 - 30090 188 222 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 25 215 15 217 245 77 25 3e-13 MAQVGNKSGVRVDISHMSVMMRRKKILDDLSLSFVSPNIYGIVGPNGSGKTVFLKAMLGF IRLVSGSVTMNEVPIDPRRAFPISVGAIIEHPGFMNDMSGHDNLLALGQIRSQLDDEAIH AVMTRVGLPDDKKPVATYSLGMIQRLGIAQAIMEDQEFIVLDEPTNALDREGIVFLTELL KELRDQGKLVLIATHDLLWLQSLADQIFELSNGKLQQVEDVV >gi|225002566|gb|ACIZ01000013.1| GENE 40 30071 - 30805 417 244 aa, chain - ## HITS:1 COG:no KEGG:LC705_00198 NR:ns ## KEGG: LC705_00198 # Name: not_defined # Def: phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 244 1 244 244 382 100.0 1e-105 MKIQWQKPLIDKRMIVVLLLEVLLLISSLALYFDQQNSKLLQQVHDPVMTVFMGAMPDRF ASSQLWWLLLWVGFMSLPIFICAGVTDAYQRNLYTFLSLRMHRRLGAYIWPLKQVVLREA SLLLVMGIAVGTLTHFFLRTQQFGEAGLFIILIIVSQTFLVVLEAVLEGYFGPMIGVVGT LTIIFLSFLQMPLMPLRFAIASTFATDPQLLGAIGYQIILIILLLLIQLFYMPGRWGRYG TGRE >gi|225002566|gb|ACIZ01000013.1| GENE 41 30812 - 31516 174 234 aa, chain - ## HITS:1 COG:no KEGG:LGG_00203 NR:ns ## KEGG: LGG_00203 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 234 1 234 234 361 98.0 1e-98 MKIRKYQLFLHFISRWQSILFLMTVLVFALTFVLAGIMTGRFEISQLDANISVQRAFGQV IFYLPIVGMMTFLLVSQAQNTSLLIRIGSRSLIAKYILRGLFYLDLVISVAVWMVWITAV LFLSRGQGGMTSVAANANLLMNIFTGLFLYTLMILALCIVFRSRVIGISLGLSLIICFYI VPFVNLTEVANLVTPKLTKDAIWPINIARQWLAIFIGAQIITILFNHVRLPVEG >gi|225002566|gb|ACIZ01000013.1| GENE 42 31520 - 32308 374 262 aa, chain - ## HITS:1 COG:no KEGG:LC705_00196 NR:ns ## KEGG: LC705_00196 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 262 1 262 262 447 100.0 1e-124 MRNKQYWQSRSTITALLLAVLFISSHLIANAGYDADGGKHLTGFYFFSPYMNWLPIDISS SLPVAWNLAAPLLSVLAGGMIAASHGRSGYAKLMRFRHSFVAYRRSVFLAAGVLGAIVPI MVLSLDFLGLLAIHPNVLPNQWLNNNVAISYLGLGGNLFYTHTWAYMLGWIALLAFYGAS YAIFSNFLYFVTGKMVLSLIGVMMVQLILLSISIIFKTSLAPITYLQIVPTIGQPSLAYV LLWPAILIAMSIFSFRVPKIEA >gi|225002566|gb|ACIZ01000013.1| GENE 43 32919 - 34541 1491 540 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 24 540 39 559 559 343 38.0 3e-94 MKAKRMIAGAMVVASAVLLVACGSKSSSSTETFNRMEKDVISTMDNAHITDVISGQAAVD TGDGLYRYKGKKLQPAVATKVVKPTNKGLTYTFNLRKTKWSNGDPVTAKDFVFAWRRATD PKTKSEYAYLFSGIKNADDITAGKKAPSTLGVKAEGNYKLVVTMERPIPYFSTMMVNPVF FPLNQKTVEKYGKKFGTQSKYLVFNGPFKLTNWNGTGNSWDEVKNKSYWNAKQVKLDKIH VQVVKDANTAANLFATKKLDDAVLTGEIAKQHAKDKDYVGDKQGRTSYLDMNEEKVPDFK NLKLRQAVAMAINRKEFANKVIGDGSFGISTLTPENSGSNPKTGEDFAKEAAKESETVQS YNLKEAKKLWAEGLKEVGKSGEQVTLTTDDTDVAKKSAEYIQSALEQLPGMKVSISSVPF KTRIQRSLDGTAQFILSGWQGDFPDPISFLDLYTTGNTYNFSHWSNKQYDELIKASETTD ANNETKRYNDLLKAQELLSKEAPVATLYQTVQGHLRNPKLKGVTFSPANMYNFVGAYMAK >gi|225002566|gb|ACIZ01000013.1| GENE 44 34849 - 37230 1998 793 aa, chain - ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 12 789 15 794 796 995 59.0 0 MDTKVKTVDYSSKEYFDKMTAYWRAANYVSVGQLYLKDNPLLERPLKSEDVKPHPIGHWG TIAGQNFIYTHLNRVINKYDLNMFYIEGPGHGGQVMVSNSYLDGSYSEIYPRVSQDKEGM KNLFTQFSWPGGVASHASAQTPGSIHEGGELGYALSHATGAILDNPDVIAAVVTGDGETE TGPLAASWFSNTFINPISDGAILPIVHMNGFKISNPTILSRKSDEDLTKYFEGMGWKPYF VEGDDPTKLNPEMAKVMDAAIEEIKAIQKHARETGDTTMPHWPVIIFRSPKGWTGPKSWN GEPIEGSFRAHQIPIPVDAEDMEHADSLAGWLKSYHPEELFDENGKLIPELAALPPKGDK RMAANPITNGGLDPKPLVLPDYRKYALDNKEHGKQIKQDMIVWSDYLRDLIKLNPHNFRI FGPDETMSNRLYSLFEVTNRQWLEPIKEPADQYLAPAGRIIDSQLSEHQSEGFNEGYTLT GRHGLFTSYEAFLRVVDSMLTQHFKWIRKAHEEPWHKAYPSLNVVSTSTSFQQDHNGYTH QDPGILTHMAEKKAEYIREYLPADANSLLAISPKLFSSQNTVNVLITSKQPRPQFYSIDE ATVLANAGLKRIDWASNDDGVEPDVVIAAAGTEPNMESLAAINLLHDAFPDLKIRFINVL DLLKLRSPEIDPRGLSDAEFNSYFTTDKPILFAYHGFEGLIRDIFFTRQNRNVLIHGYRE EGDITTPFDMRVLNELDRFHLAKDVIQHVPAYAEKAAAFVQKMDDTLQYHHDFIRANGED IPEVQEWTWKSIK >gi|225002566|gb|ACIZ01000013.1| GENE 45 37491 - 37637 219 48 aa, chain + ## HITS:1 COG:no KEGG:LC705_00193 NR:ns ## KEGG: LC705_00193 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 48 1 48 48 85 100.0 5e-16 MKKPLIKTVTTLAAIGIIAYCLKRFSDELVVYVSPSKAMGYDASESDF >gi|225002566|gb|ACIZ01000013.1| GENE 46 37651 - 37824 127 57 aa, chain + ## HITS:1 COG:no KEGG:LC705_00192 NR:ns ## KEGG: LC705_00192 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 57 1 57 57 87 100.0 1e-16 MSFSELDWLLLIFAFIGAFSLMVFGQLMAAVIIIILMLGAVAIDQTQTPHHPRRPAM >gi|225002566|gb|ACIZ01000013.1| GENE 47 38232 - 38876 198 214 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 5 208 7 215 311 80 26 2e-14 MYIQVNDVSKKIKGVTVLNHMSFNIEKGTVTILKGPNGSGKTMILRTICGLVKPDQGSIT VDQRKISFGKQLPVTMGVIIETPDFINTYTGFQNLKFLASINGAPDPEQIQHYLSQMGMT AYQHQKVTKYSLGMRQRLAIVQAFMENEEVVLLDEPTNALDTDGLVRLNSLIEVQRQKGT TIIIATHSHQEIQVPGQQVIHIENGMVKGALRDA >gi|225002566|gb|ACIZ01000013.1| GENE 48 38869 - 39363 260 164 aa, chain + ## HITS:1 COG:no KEGG:LC705_00190 NR:ns ## KEGG: LC705_00190 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 164 1 164 164 310 100.0 1e-83 MLKQTKYCLMLILAVMIVTIIGASVKNLNTNQYCYQEKNIKLGQTALLYRKHPFRITHVE MTTDLAKVFNQQEQRILKDDQTKQFIVVKAVSSYRSSEHITLNVDNNNIYEVSPFGTRRY ASSYRYVFCLSKKLSGAFNSHSLRLSVDNPDLPGRTRHTFLLTK >gi|225002566|gb|ACIZ01000013.1| GENE 49 39385 - 39603 202 72 aa, chain + ## HITS:1 COG:no KEGG:LC705_00189 NR:ns ## KEGG: LC705_00189 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 70 1 70 266 119 100.0 3e-26 MTKAYFKTQLLRLLDNRMVTLWLLIAGLIAIYHQLTTTISRGSWNTAPTAYQIMIGFDFS SLSSLYYLVFIT >gi|225002566|gb|ACIZ01000013.1| GENE 50 39720 - 40199 244 159 aa, chain + ## HITS:1 COG:no KEGG:LC705_00189 NR:ns ## KEGG: LC705_00189 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 159 108 266 266 261 100.0 5e-69 MLVTFLVGGGALTLPLVLDALIALTREQGVIIDPFTVSGQVISPGTTYFASFIHSPLQFL LGYLGLFFAFSGMMATTTFLIFKLTNRRSIAILLVFIVFLSEWLIGPLVGLAEISPAIFL IPSQGYNVITPWLMAVNLFLTTGLIAILYWRVVQTDDIK >gi|225002566|gb|ACIZ01000013.1| GENE 51 40186 - 40827 263 213 aa, chain + ## HITS:1 COG:no KEGG:LC705_00188 NR:ns ## KEGG: LC705_00188 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 87 213 1 127 127 210 99.0 3e-53 MTSSKRNLKLFVYIQLAFSLSIMALIFGEKSVGYELSLFTHVKPNVESFYLMVVIIGLFL CKQRHDAFLLVRVHDRMTIFRRNLFTVLVHAWTSSFIYWIIIGSFIQHLVVPSLLIDACL FALNGCLMGSVFFTLTYLLPKANILPLLICLALIFTVCFARMFASPHLNNAYNLFIAQSW FKGNFVVTTVSCLLLIFAFNYLNAELVQKIEIY >gi|225002566|gb|ACIZ01000013.1| GENE 52 40887 - 41525 138 212 aa, chain + ## HITS:1 COG:no KEGG:LC705_00187 NR:ns ## KEGG: LC705_00187 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 212 11 222 222 305 100.0 1e-81 MIFLQHSFISVIILVTFMPLQLLLVIFGSSDAFSFQSYHADQHLIHWLMAHLPWLLVYLL PPIWLFSTIDQLCNFISIMVDVRLSKKLDYTLASYATITIICLLTTFSFGFLPVLLCHPS FDWLSGIAWLVSIITGTIIFFCLTTVFNETWGLLLYLSFLILTVAANRPYLITTGLNQPP LFVLINLGTNLFLLIILFVTLLFIFKHRVAYL >gi|225002566|gb|ACIZ01000013.1| GENE 53 41609 - 43057 1097 482 aa, chain + ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 13 480 9 487 491 261 38.0 2e-69 MSTSTKPQGRGLVMAAVFIATFMTSVEVTIVTTALPAIISDLHGLAYQSWIMSAYLLTTA ITTPIYGKLADTLGRRGVFQWGVVLFTLGTLLSGLAPHILLLILARALQGIGAGAVMPLT FTIIADYYDFAHRANVLALNNTAWGLSALVGPLIGGFLVDQLSWHWVFFVNVPLGILVFG LIQIGYREPRREHVSLTIDWLGITWLAVTLVALLLGIQALDQQPWLAALLIVLAIVGGYL LIRQEHRAVDPLIAPQMFHRFTFTVQILTALLLSGVLIGYQVYFPIWLQSLYHLGATAAG LVVTSSSVLWLTSSFLVGPLIKRMVPRTLTLALVTILTLAYLLLTFASSSFPVWAFYVIA MINGTVMGIVISMNTVLSQHLVPDRYVGSATSILTLGRSLGQTIMTGVYGAVLTLVIRAN LHGTSFKAVNAAISANSATTVHDPHAAAAILTGLHGVFIMVVIIMLLVIVINWRDPNRDI IQ >gi|225002566|gb|ACIZ01000013.1| GENE 54 43072 - 43791 683 239 aa, chain - ## HITS:1 COG:lin0662 KEGG:ns NR:ns ## COG: lin0662 COG2231 # Protein_GI_number: 16799737 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein related to Endonuclease III # Organism: Listeria innocua # 3 189 6 193 209 192 49.0 5e-49 MDKRLIVMHNLSQHYGKQYWWQQNSLEDWLMMILIQRTSSKNVAQAVHNLRPYMQVDRLL ALSQPELETLVRPAGFYRQKAQRIHDLLVWFVAQGGSFDKIAEKPTAELRKTLLALNGIG NETADVMLMYTFGKKTFVADTYAMRLFNRLGFGPYKNYAKMQADFTPLLAGISLDDAREW HALIDEHGKTQVRHAYDDHFLLQPNLPEAAWPPEAKQIEPPHDDPGSGKWRRMSEQSDK >gi|225002566|gb|ACIZ01000013.1| GENE 55 43949 - 44773 682 274 aa, chain + ## HITS:1 COG:lin0658 KEGG:ns NR:ns ## COG: lin0658 COG0639 # Protein_GI_number: 16799733 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Listeria innocua # 3 202 4 191 235 93 29.0 4e-19 MTMIVVSDIHGNLKTMDRVRLMQAKYPHALTVYLGDYIDGYPYGGRVLSQIYEQVQNSQA IAVRGNHDQMLLDYLADKDNPWFINGGKVTLRQMIKDFVPANAQKSNLRQAVQQHIAPLI TFIAEMPTAVTFDKLLLIHAGLDLSLENPLKETTPFNRMWVREPYIYDMQQTQTRQHPIF AHNPLNKTIVTGHTPTALIYGDYAGDVKPPVPETPLTGNYPKCPVKVIQYPHESPRYFID GGNHMGFKENYGNICVFDETKGVMVDSDQGINAE >gi|225002566|gb|ACIZ01000013.1| GENE 56 44919 - 46256 1375 445 aa, chain - ## HITS:1 COG:STM2342 KEGG:ns NR:ns ## COG: STM2342 COG3037 # Protein_GI_number: 16765669 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 442 7 449 463 321 42.0 2e-87 MKFLVDMLSQPSIIAGIVVLVGLIALRKPFTEVIGGTVRAFIGFVVMLAGTNIIVGALNN FAKLFTKAFNMHGMIPSNEAAIGVTVAKYGTVATFIFVFGLVLNIVLARITKFKYIFLSS DHAFYMACCLTPIMILGGLNTVEAIVFGSMTLGVILCVFPAIAHPTMKIITGRDDMSFAH FGTLEYWLSAKIGSLVNKNKKSKSIEDINFPKSLAFLQDSNVSVTIVMTILFFVVTAVAG PAYVGKLTDLNPYVWALLQAAQFTAGIIVLVQGVNMLLAEITPAFKGFSEKIVPSAVPGY PFAILFKGTSNALLAGFLVSLLGGLLSMGVQIIIGTTIVIPGIVMHFFCGGIAAIFGNAT GGRKGALIGPFIGGIILSFLPLVATGLYGGLGYTATYWSDSDFNTIGVLLGLVAKVGKWP IMLAALIIFAFPFVFSALHKKKLVD >gi|225002566|gb|ACIZ01000013.1| GENE 57 46368 - 47237 893 289 aa, chain - ## HITS:1 COG:ECs5069 KEGG:ns NR:ns ## COG: ECs5069 COG0191 # Protein_GI_number: 15834323 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli O157:H7 # 1 289 1 286 286 213 38.0 4e-55 MVLVNTKEMIKKAKEGHYAVGSFNVTDIEMIRGIVGAAEKENSPVIIQFAELHDKYVPLD VIAPVMLNVARKASVPVAVHFDHGETFDNIMRAIRLGFTSVMVDASQENFADNLAQTKEI VKICKPLNISVEAELGPMNREGSGDKKVDYADLNKTYTNPQEAKQFIEESGIDMLAVAYG TVHGVYTQKPHLSFSRLKEISDLVDFPLVVHGASGLTDEEYRKSVENGICKINYYSEMVH RVALGVQKKLEQDDSDKQLFISDASIWETEMVEEEIRGRLRVFGSAGKA >gi|225002566|gb|ACIZ01000013.1| GENE 58 47249 - 48745 1236 498 aa, chain - ## HITS:1 COG:AF1752 KEGG:ns NR:ns ## COG: AF1752 COG1070 # Protein_GI_number: 11499341 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Archaeoglobus fulgidus # 3 488 10 486 493 235 29.0 1e-61 MALMGLDLGTTGVKSTITDNEGNILSAAYREYETSVPREGEYELDPSVVWSATKEVIQES KKFVKEDVLAVSVSSFGEAFVAVDAQGQPLMNTMLQTDSRGKDELNDLLTRISAEEIRNK TGLNPAVTFAVPKIMWIKKHRPEIYQKNHRILLYGAYILYKLGNVDAIDYTLADRSLAFN VSTNDWDSDILAAAGIDRQLLPKCYRLGTVVGTIKPELASELGVNPDMKLVTGAHDQICV SIGAGTIDVGDATDGMGSVDNISPIFTDTSHLKENAKKNYPTVPYLDNKYTTIAYMYDGG TSLKWYRDTFGFEEVQAAQLSGVSVYDIFDKYVPQKPTNLLILPHFSGAAVPYFDEDARG MILGLSGATRKPDIYRALMEGVAFEMRMNLDNMEAGGMHVNKLRATGGGSRSDTWLQIKA DVFNREVDRVHMKESGTMGVIIMAGVAVGLFDSFESAMKKLVTIDKVFKPIPENVAFYNR QYKKYRELYAFGKKLRSL >gi|225002566|gb|ACIZ01000013.1| GENE 59 48912 - 49664 435 250 aa, chain + ## HITS:1 COG:lin0379 KEGG:ns NR:ns ## COG: lin0379 COG1349 # Protein_GI_number: 16799456 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Listeria innocua # 5 230 7 236 256 130 37.0 3e-30 MVSFQRQNQILKILNTQQFARYSDLAKQLFVSPATVRRDTLDMENRGLIRRVLNGVTLSE EPKDVPYDYSVTLNLDAKRVVATRANRLIKSGMSLFIDSSTTSLVLIRELKDIDELYIVT NGILVALEASKRNGWYVSLVGGTVNKMLENISGDKATRDIENYQADLAVFSCRGLIATGA TDANDQEANIKRAFAAHADQVMLLVDHTKVGKHQLYMSAPMNTLDYIATDKVMPEAIVNA ARANHIRIFD >gi|225002566|gb|ACIZ01000013.1| GENE 60 49812 - 51002 1116 396 aa, chain - ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 396 1 394 395 411 52.0 1e-115 MAKILAVNAGSSTLKWKLFDMPAEVQLAEGLVDRLGQPQSKVKIKYGDGQKYESDTPIAN YQEAVASLMGNIKALGLVEHLHEIIGVGHRVVAGGEIFAESVVVDDETLLQIQNLRDYAP LHNPVEADYISVFRKMMPWANEVAVFDTAFHQTMQPENFLYSIPYEYYEQYGARKYGAHG TSVRYVSARAAEMLGKPLEDLRMIVMHLGSGSSITAVQGGQSIDTSMGFTPLAGVTMGTR SGDIDPSLVGYLMKKLAIPDVGQMIHILNNDSGLLGISGLSNDMRDLEAAEDTNTRAKLA LDIFVNRVVKYVGSYAALMDGVDVLVFTAGIGENGDEIRDKIMRSLDYLSAKIDNDLNYK SHGVEADLSTADSTVKTLLVPTNEELMIVRDVMALS >gi|225002566|gb|ACIZ01000013.1| GENE 61 51278 - 52624 1097 448 aa, chain - ## HITS:1 COG:CAC0326 KEGG:ns NR:ns ## COG: CAC0326 COG2256 # Protein_GI_number: 15893618 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Clostridium acetobutylicum # 4 430 7 433 443 557 62.0 1e-158 MDQSLFQNGNFQPLASRMRPQTLDEFVGQTHLLGKNKVLSNLIEHDEISSMIFWGPPGVG KTTLARIIARRTQAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQ QDAFLPYVERGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKDPR GYGLQQVKISKKLLAQIADFANGDARIALNTLEMAVTNAETKHDVVSVTQADVAQLLTKK ALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPLYIARRLVRFASEDVG MADSRALEIAVTVYQACQFIGMPECTVHLTHAVTYLSLAPKSNALYTAYGAAKKDATETL AEPVPLQIRNGVTDLMQDLGYGKDYQYAHNTKDKLTTMQTMPDNLIGKTYYHPTDQGSEA KVKERLEQIKAWHAQHPAPESPQPKKKS >gi|225002566|gb|ACIZ01000013.1| GENE 62 52917 - 53243 404 108 aa, chain + ## HITS:1 COG:no KEGG:LC705_00177 NR:ns ## KEGG: LC705_00177 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 108 1 108 108 205 100.0 5e-52 MAQPSSLEGFPKGEFAAFSTAKMTHFLPYSQGTTTKDLKGFFGDNFQYLTKTPIGRLKIE IPNTEPLIVQYGEIIARFSNGKFKVIDSTYFHKNFNDPLVDEDEKGIY >gi|225002566|gb|ACIZ01000013.1| GENE 63 53327 - 54313 671 328 aa, chain - ## HITS:1 COG:no KEGG:LC705_00176 NR:ns ## KEGG: LC705_00176 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 328 1 328 328 543 100.0 1e-153 MEKETGFWPAIKDFFFRAGDFKGVSSRSQYWWVFLAQFLLGIVIGFVSALTGSILTTTTH SFGESIIKSVVTLLFMVPMYLSYPQLSLTLRRFRDAKVNPWWYLVLVLVALVGPLLTVSG MGLLPMIILPLVVALVDLIILLFPSREQTVKPFPVHPHMGSTIGVTFGAAVKDLFLRGGD FTGKSSRSQYWWSVLFSALIIVPAFFFLIFSITAALLGSAALGKLQPQNIINTFNSLGIG AVILVAIILAIVYGWSMLALPVLTVIWRRFRDAGVSPWWFVAFTIASNIVSAVQTSAPNV PLNLVTLILLIAQIVILALPPKVQNDEA >gi|225002566|gb|ACIZ01000013.1| GENE 64 54506 - 55969 1080 487 aa, chain - ## HITS:1 COG:no KEGG:LC705_00175 NR:ns ## KEGG: LC705_00175 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 487 1 487 487 940 100.0 0 MKLVELMEKNDQKKLQLLNYLDQYPNRQVRNSELQDKLQISYYMFKRWTKEIVDDIATFQ LDDRFSLEVTDASTILHEHHNTNTSVFLAHYLKLSPKVNILLTLMTQQATFNLADFAEAN YVSYTFMYKRYIALRETLKKWQITLTSQGELTGNELAIRLLLAKIMVVTHVTEDKFNHEV RQALAELLGLMKTTDAKPSMSQLIETKAYVLISLLRCQQGYTIASSQEVADLVANIRQGT LATRNKAIAIYQAHFDASDQAINSECDYLGTFLAILGIINSEEIVFPETIKQRGQAFIHG FEAKFKVTLSAVAKLKIAYAVNKCFVDVLVLPFRSEFFDDHIDISYFFKTYPGFFEYCQH FVLNQALHLESSQAQFLFYHCLLALAANVPLSKVLAPLSICVDFTSGHDYNAIITRDIQS FSTLNIQMTQQVEPETQLIITDLVNAYHDYDIPKVIWLSPPRPEDWENLINELLRLREQA QEEFQKR >gi|225002566|gb|ACIZ01000013.1| GENE 65 55980 - 56201 69 73 aa, chain - ## HITS:1 COG:no KEGG:LC705_00174 NR:ns ## KEGG: LC705_00174 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 73 1 73 73 122 100.0 3e-27 MNDIDPEETMISENSRLWLSAMFDADGKSGRIFAVSSQSRVSYRWRRLNLANLAYRLAGK TLLAQSRIERAKK >gi|225002566|gb|ACIZ01000013.1| GENE 66 56282 - 57361 935 359 aa, chain - ## HITS:1 COG:no KEGG:LC705_00173 NR:ns ## KEGG: LC705_00173 # Name: ynjC # Def: cell surface protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 359 1 359 359 653 99.0 0 MKKKLFCFITLIVMLIMPATQVFASELNFAAKAELPDNQVNPDVSYFDIKMNPGAQQTLH VQLRNETEKPVTLDVELASATTNLNGVVEYTPNTIKPAKSLQFNMKDYVKAPKQTVIPAK GSTVLDLAVKMPDKSFNGVMAGGITLKEHGLSDQGSQTSGKKVAIKNRFSYVIGLLMRQN LAAVPAHVKLNAVKPSQVNARNVILTSMENDTATFIQQVAVDAKIFAKGSNQALYQVAKE GLQIAPDTNFDFPIALAGKALKPGTYVAKLEVYGNRQPNGKILRTTAEGKQHYRDHWTMT KQFTITEKAASTLNQRDVTIKPSHPQWAYILIGAVIVLMALIILLLILLLRRQAKKQAS >gi|225002566|gb|ACIZ01000013.1| GENE 67 57503 - 58309 816 268 aa, chain - ## HITS:1 COG:no KEGG:LC705_00172 NR:ns ## KEGG: LC705_00172 # Name: yqcC # Def: cell surface protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 268 1 268 268 384 100.0 1e-105 MKKFYVMASMLGLGMLGLAGVTPTLVSASDVTSNGQVKFKLDQSQTDPKNPLDPADKNPG KPTDPTQPGGKVPGGTGGPLSIDFASSLIFGEAEISHEDATYYAKPQTFTQDDGTTVDRP NFIQVTDKRGTFEGWTLKVKQENQFAVKDDPTKELTGAQLSFTNGNLVSSTDAQYAPKFQ KSFDLIPGQAQIAPVEAAADQGMGTWIYRFGDDKEMAKSIALSVPGKTPKMAKAYTTALT WSLESTPANTTSTPSTTSTPSTTGTTKP >gi|225002566|gb|ACIZ01000013.1| GENE 68 58312 - 58629 297 105 aa, chain - ## HITS:1 COG:no KEGG:LGG_00182 NR:ns ## KEGG: LGG_00182 # Name: not_defined # Def: extracellular protein # Organism: L.rhamnosus # Pathway: not_defined # 1 105 2 106 106 118 100.0 6e-26 MKKWLLLVVLLIGFTCPPSQALAVETQTSGEISFFEVEQPVNQPSPEQIKPKQQVNVPPP TKEDQLPALGMMTPLLVSLIGLLLVLLMLLILLTKQSNTNKKEEE >gi|225002566|gb|ACIZ01000013.1| GENE 69 58647 - 60608 1154 653 aa, chain - ## HITS:1 COG:no KEGG:LC705_00170 NR:ns ## KEGG: LC705_00170 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 5 653 1 649 649 1173 100.0 0 MSGLMLLQPVGLNVGQQVESALASQPTTSGQPSVATSSSSVASHESLQTPSAASAASESA ATQASVPAVVGEKPQQTSTTTPAESTTLKRSKRAASSNSSSQPQPCLVQTAKALAEAVRR GETYIRLTADINIGRAAIPVKHSLVIDGDHKYTYMYNGGENWHVGLYFAASNISITFKNL KIGDPRVKNSANNYYGIAPAENLIKNSKIIVENVDYYSDRGAQPFHIRNASNQIVFRGKN SFHTTKIAGSVLVQEFAEATNFLFEEDSDTTINMENTELIGTFWPSTGPLNLTLKNRARL KVVSANALVYSDGGALHKNRITVGEGAVLDVKLTDKKDGVLMYHDHDLTIDVQKNGRFLA ETVGANNFNKNSSLNLGPGAKAELKNTHGDFYKNGSGTIRLDNADELLMTSGSHGKTSPT GLSASKPTLTFASFTSETKGYGIYADDQWVTDQADTSSWAFTPTRIKRSPTALTRGQEHQ IQAASRFKVVRNATKGTTESPKNPPVVTPAKKPGQLFLKQVPDFDFGPRLIKPETQILRP KVDGEFIIEDTRTAAAKSVKVYVKVIKPFKNGNLDVTSCLSYINRSGTEQQLSDQAVLAE EVDMTSPQSLSSQWNQATDEQARGLKLVLPVEKQKLGTFTGEFEWSVQDVPTN >gi|225002566|gb|ACIZ01000013.1| GENE 70 61029 - 61115 56 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVFFKALHDRSLRKHDVKYASAQFKAGV >gi|225002566|gb|ACIZ01000013.1| GENE 71 61092 - 61667 481 191 aa, chain + ## HITS:1 COG:no KEGG:LGG_00180 NR:ns ## KEGG: LGG_00180 # Name: yoaA # Def: alanine acetyl transferase # Organism: L.rhamnosus # Pathway: not_defined # 1 191 1 191 191 384 100.0 1e-105 MQSFEKYHPIMSVHYTMDWLTTFKIKDIFQLRADRQVAAESGREFDQKITDTARYINRSM RLVMSNNALLYGIMDRASHEFLGSFCIWNFSQKKTVAQVRFETLASHQGEGIMSEVIKRM LGFAFFELGLKRVYVILPATNERGAKLLTTNFFTKVGDYHHDRTLPDGSKVPLVRYELTA EDVADKEDFHF >gi|225002566|gb|ACIZ01000013.1| GENE 72 61839 - 62135 292 98 aa, chain - ## HITS:1 COG:no KEGG:LC705_00168 NR:ns ## KEGG: LC705_00168 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 98 1 98 98 149 100.0 3e-35 MFNFQDNPDEYKRLMQLEVLIAVVAIAASIVMFNFGVMTGALFAAIAGAFFLMDAIVEGL RLLGASRGFSRFIGTAIAIPALAGYLIMMFNRFPVQVA >gi|225002566|gb|ACIZ01000013.1| GENE 73 62326 - 63303 788 325 aa, chain + ## HITS:1 COG:lin0753 KEGG:ns NR:ns ## COG: lin0753 COG0346 # Protein_GI_number: 16799827 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 1 317 1 317 319 344 52.0 1e-94 MANQLTGLHHLTAITSSSPRIFRFMSGILGLHLIKKTVNQDDVRTYHLYFTDDMGTAGTD ITFFDFPGIQKAQHGNNEIARTSFRVPSDAALTYWIKRFDDHRVRHDAIDELFGAKILRF HDFDGQQYQLISDEHNEGVPAGTPWRHSTVDPQFAIGGLGPEYITTDHYDELISVMTDLL GFKQIAKDGQYTLLELNNGGHGAQVIIDYQRLIPAAYQGFGGVHHLAFRTDDRDSLQYWI EKIGNAGLNSSGFVDRFYFASEYFRPIPDILFEIATDGPGFLLDETYEEAGVHLELPPFL EDQREAIERQLVPFNTEPQTAEKAK >gi|225002566|gb|ACIZ01000013.1| GENE 74 63379 - 63702 311 107 aa, chain - ## HITS:1 COG:AF0913 KEGG:ns NR:ns ## COG: AF0913 COG1416 # Protein_GI_number: 11498518 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Archaeoglobus fulgidus # 3 107 1 112 112 65 32.0 2e-11 MALKTIFHLDTTQRWAHLASNLNNYLGAEPDADIEVLVNGDGITVYFDPQVTEFIAAHPQ VKFFACHNSLQQRHLDEKQLPATVKVVPVGVVKIAQAEADGYGYIKP >gi|225002566|gb|ACIZ01000013.1| GENE 75 63838 - 65295 1380 485 aa, chain - ## HITS:1 COG:SPy1736 KEGG:ns NR:ns ## COG: SPy1736 COG2252 # Protein_GI_number: 15675585 # Func_class: R General function prediction only # Function: Permeases # Organism: Streptococcus pyogenes M1 GAS # 1 485 1 486 486 464 60.0 1e-130 MENFFHLKQNKTTPMTEVMAGLTTFFAMSYILFVNPQVLSQTGMPAQAVFLATIIASAVG TLVMGLFANVPYALAPGMGLNAFFTYTVVFALGFSWQEALALVFICGVINILITVTKIRK LIIVAIPEAIQHAIGGGIGVFVAYIGIKNAGFLQFTSEASSINTINGQPLKEGALTLKHG IESVVSNGGIVPALVNFTQAGAVLALIGLVIMVILNVKKVPGAILIGILLTTIIGIPMGV TDLHLSAANSFGSTFASLQTTFGAAFSAKGMGSLFANPDKIVLSIMTIFAFSFSDIFDTL GTFIGTGRRTGIFSDADEQALEQGSGFSSKMDRALFADSIATGVGSIFGTSNVTTYVESA AGIGAGGRTGLTSVVVAGMFLLSSVFAPFIAIVPTQALAPALILVGIMMMSTFKEIEWDD LSQAIPAFMASIVMGFVYNISYGIAAGFIFYCLIKLITGKVKEIHPVLAIVTIGFILNFV ILASL >gi|225002566|gb|ACIZ01000013.1| GENE 76 65489 - 65839 346 116 aa, chain + ## HITS:1 COG:no KEGG:LC705_00164 NR:ns ## KEGG: LC705_00164 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 116 1 116 116 166 100.0 3e-40 MWLWLHLISWAVLAVAAGIALFSRTRQFVMWTMIARVCYLVSIISGVVLMRFSFNRNPML TVIKILIAIGLIGLLEMAFADKKQQHLSKIIIWSAIAAFVLVTVVGFALAQFRPFI >gi|225002566|gb|ACIZ01000013.1| GENE 77 65881 - 66249 389 122 aa, chain + ## HITS:1 COG:mll3930 KEGG:ns NR:ns ## COG: mll3930 COG3759 # Protein_GI_number: 13473360 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mesorhizobium loti # 4 120 2 115 117 58 37.0 4e-09 MSRISFLLVGLLSLLHLTIMALEMFGKPTSQAQNLALPPDFVKQPHAQMLLKNQGIYNGA LAVIMPLSLLLLNGPNQLITLRLLTGFVAIVGLYGGATMSKKIYFVQAIPGAFTCLTLFF PE >gi|225002566|gb|ACIZ01000013.1| GENE 78 66295 - 66591 239 98 aa, chain + ## HITS:1 COG:no KEGG:LC705_00162 NR:ns ## KEGG: LC705_00162 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 98 1 98 98 141 100.0 8e-33 MVLISLLLDLIAFGGYFLVTANPNPPIFLLLSIVESVIVVLLIGFTFAYRGQRHSRFFDA STGTRPYTVRFTIIVVSMLVNAAALFIYVMALLGNSIF >gi|225002566|gb|ACIZ01000013.1| GENE 79 66665 - 67402 480 245 aa, chain - ## HITS:1 COG:BS_yydK KEGG:ns NR:ns ## COG: BS_yydK COG2188 # Protein_GI_number: 16081065 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 11 238 5 227 236 102 27.0 5e-22 MSQRESSYSTKELVNQLLKDIQQGMIQGADGQLPTEPELMKQYQVTRYTLRQALKNLANL GYIYQAHGSGTFARPHHVEGAISLQNNVGLTAEMARQGKIVKTTGISQQIVPLSKAAFVP ESQKLAQDTELISVIRQRTLDDEPFLVEHSYYLKSMVGEIPDSALKGSLFAFIDQKPGLK VGFIDSVIECEMITGTPAQFFNLADGSPSLVVRDDSYLSSGKLFAFSKIFYDFRKTKFFM LKKMH >gi|225002566|gb|ACIZ01000013.1| GENE 80 67625 - 69061 967 478 aa, chain - ## HITS:1 COG:L22116 KEGG:ns NR:ns ## COG: L22116 COG2723 # Protein_GI_number: 15672399 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 6 477 5 478 478 655 66.0 0 MSAFPKDFLWGGAVAAHQFEGGWSADGKGISIADVMTAGDNQTKRRITDGVQPGENYPNH DAIDFYHHYKDDVELFSELGLKCFRTSIAWSRIFPKGDEEQPNEKGLQFYDDLFDDLLAH HIEPVITLSHFEMPYHLVQAYGGWRNRKLIGFFVKFAKVVFDRYKDKVKYWMTFNEINNQ VGMLNEWSLFTNSGLIIQPDENKEQAMFQAAHYEAVASALAVQIGHMINPDFKIGCMVAM GPVYPATPNPNDVFKAERMMQTNYYLADVQVKGHYPAFLEHYFARRQFNLDITLEDRDVL LAGKVDYIGFSYYASHVVKAADDEPTDFITLGSNQEIKNTTLHRSDWGWEIDPVGLRYAL NWFSDRYDVPLFIVENGLGAFDKVEENGSIHDDYRIDYLRQHIEQMKLAVEVDGVKLMGY TPWGIIDLVSAGTGQMEKRYGVIYVDKDDQGKGTLARSKKDSFDWFHKVIQSNGEDLT >gi|225002566|gb|ACIZ01000013.1| GENE 81 69107 - 70471 1142 454 aa, chain - ## HITS:1 COG:SP0310 KEGG:ns NR:ns ## COG: SP0310 COG1455 # Protein_GI_number: 15900243 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 6 445 5 446 448 472 56.0 1e-133 MDSSNNKLFKFMNAHLMGPMGKLASFRIVRGVMAAGMASIPFTIVGSMFLIINVLPQSFP ILTGLWKNSFDKISNLYMLANGATMGILSLYFCLVFGYEYTRIQAQEEKIDVNPLNGALL SMMAFFMCVPELVFKGGTATLITEITKDSKIVDGYAIAGDVTRLGTTGIFTAIIMSIIAV KLYAWFVKKNIVVKMPDTVPAGVSRSFTALIPTAAIALTVIVINGILMIFNTDIYKIVAI PFGFVTNLTSTWLGLLVVYFIMHALWIVGIHGATIVTSFLTPIVLSNMQLNQKGANIPFA GEFNNCFVTIGGSGATLGMVIFIAFFAKSAQLGALGKASIVPAFFNINEPILFGMPIVYN PYTAIPFFLAPMASMTIAYFAIDLHMVKPMIAQPAWPTPLGLSGFIGTAGDWRAIVLAFV CAFVAFLIWFPFIKFYDGKLYQDEQTKGAQEAAA >gi|225002566|gb|ACIZ01000013.1| GENE 82 70494 - 70988 321 164 aa, chain - ## HITS:1 COG:no KEGG:LC705_00158 NR:ns ## KEGG: LC705_00158 # Name: not_defined # Def: PTS system cellobiose-specific transporter subunit IIC # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 164 1 164 164 307 100.0 8e-83 MPKPSESKYDKGRQELSLTSMFFNRYLLIRYTTAAFFFANLYWFFLSFSAVGLAKWWPFT LILTTAAVAVEQVSKYWRRDNKLPVTKVGYAGQLLSNFLALVVIVTGHGASIFPFFGQKG ISLITTVLLIGLGICFYILARVHLIETNRDRYLKRIRQFAQSLQ >gi|225002566|gb|ACIZ01000013.1| GENE 83 71008 - 71331 416 107 aa, chain - ## HITS:1 COG:lin1830 KEGG:ns NR:ns ## COG: lin1830 COG1447 # Protein_GI_number: 16800897 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 9 100 7 98 100 93 57.0 9e-20 MDEKQQLMVMQLIMAGGNVKGSAFEAIKAAKVGDFKTADTKLKEADKFLADAHNAQTGML TDEAQGHHQPVSLLMVHGQDHVMNAITFRDLAGEVVDLYRKISQESN >gi|225002566|gb|ACIZ01000013.1| GENE 84 71341 - 71655 351 104 aa, chain - ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 101 2 100 101 102 64.0 2e-22 MAKKTIMLVCAAGMSTSMLVKKMEDAAAKEGVDAKIFATSTADAHDKLDSENPDVLMLGP QVRYLEGEFKKDLSIPVEVINMQDYGLMKGDKVLKAALDLIDKK >gi|225002566|gb|ACIZ01000013.1| GENE 85 71937 - 72938 988 333 aa, chain - ## HITS:1 COG:TP0037 KEGG:ns NR:ns ## COG: TP0037 COG1052 # Protein_GI_number: 15639031 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Treponema pallidum # 1 323 1 323 331 227 37.0 2e-59 MKIIAYGARVDEIQYFKQWAKETGNTLEYHTEFLDEHTVEWAKGFDGINSLQTTPYAAGV FEKMHEYGIKFLTIRNVGTDNIDMTAMKKYGIRLSNVPAYSPAAIAEFALTDTLYLLRNM GKVQAQLHAGDYEKASTFIGKELGQQTVGVMGTGHIGRVAIKLFKGFGAKVIAYDPYPMK GDHPDFEYVSLEELFKQSDIIDLHVPGIKQNTHIINEAAFDLMKPGAIVINTARPNLIDT QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLAMPNVVLSPHIAYYT ETAVHNMVYFSLQNLVDFLTKGETNTEVTAPAK >gi|225002566|gb|ACIZ01000013.1| GENE 86 73044 - 73535 454 163 aa, chain - ## HITS:1 COG:lin2344 KEGG:ns NR:ns ## COG: lin2344 COG0350 # Protein_GI_number: 16801407 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Listeria innocua # 10 157 14 152 160 119 40.0 2e-27 MQYTWLNMPEHNYLIVVDQGKLAFVGSPDAKLSEATRYIKGPLVFDREEMLPFRNAIYDY LSGDSREIAVPLVFHGTKLQVAVWRYLMTIPYGETRTYKQVAVAVDRPRAFQAIGNAVGR NPLMMAIPCHRVLRTDGGLGGFRGGLTLKRKLLALEQGQHPTF >gi|225002566|gb|ACIZ01000013.1| GENE 87 73739 - 74413 531 224 aa, chain + ## HITS:1 COG:lin2728 KEGG:ns NR:ns ## COG: lin2728 COG0745 # Protein_GI_number: 16801789 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 219 1 220 225 176 39.0 4e-44 MVKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDG YQFAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRA KITADNLLIVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFW DLASDTSMRAVDVYITKLREKFKAADGFTIKTIHGLGYKAVLTL >gi|225002566|gb|ACIZ01000013.1| GENE 88 74410 - 75477 872 355 aa, chain + ## HITS:1 COG:lin2727 KEGG:ns NR:ns ## COG: lin2727 COG0642 # Protein_GI_number: 16801788 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 76 353 185 459 459 155 32.0 1e-37 MKSVNEQAVQPQVKQHFSWFQFFGSFFTLSILAALPGILYGNNWHLVLTPLLGWYLLYWA LVAAGFSAFTAWQKYRAFDKPLKALSDAAEQVANGNFDVYLQPVHAPQNYDYLDAMFANF NIMVAELGSTETLRSDFVANVSHEFKRPLANIQGYAQALQQSGLDRKTQQLYLTTISDSV AHLATLVTNILKLNKLQTQVTAPDYQKFDLSAQLTRCLLDDANAIDAKQLHLTIDLPDSL PIISNPQLLEIVWHNLIGNAIKFAPPRGHLSILAKADDTTLRVHIHDDGQGIDENTQAHI FDKFYQGDTSHASAGNGLGLAIVAQVIRLLNAKISVQSNPHQGTTFTVSLPQSEN >gi|225002566|gb|ACIZ01000013.1| GENE 89 75604 - 76110 488 168 aa, chain + ## HITS:1 COG:no KEGG:LC705_00151 NR:ns ## KEGG: LC705_00151 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 168 1 168 168 309 100.0 3e-83 MQKNSFIAYEYLTQTVSPSMQATYVDGYANFGWQLQESKEGLHGVTLAFKRDRSITHKSE LNRIQKQFEQQMAHVVRLEKSKQSSATSLSLLIGIVGTVFMAGSVFAWEAALILLSVMLA IPGFLAWGSAYFAYRWWQARRSARIDPLIDQQFDAIAETSKAAFLLLN >gi|225002566|gb|ACIZ01000013.1| GENE 90 76174 - 77595 1060 473 aa, chain + ## HITS:1 COG:BS_ycnB KEGG:ns NR:ns ## COG: BS_ycnB COG0477 # Protein_GI_number: 16077452 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 3 436 6 439 472 273 38.0 7e-73 MKQSAPKNRNLIFAVLLTGTLISSLLQTALTTALPDIIKTFGVTANAGQWLTSGFSLAMG IMIPATAFLIKRIPTKALFIASMLLFAGGSLLAALAPTFAILLAGRIIQSLGTGILLSLT QVVILTIFPVSKQGGIMGIYGLAASAAPIIAPTITGLLIDYMSWRVIFWVGVIVAVADII FALIVIKDVLPTEKLQFDWQSFLLISIAFTGITVGFGNLGTAPFLSLAIAAPLAIAVVAG MAFIYRALHVDQPLLDLHVFKDPVFRTAVILSALMYAVLMAVSTVFPIYAQTVHHLSATM SGLIMMPGSLAMAIMSPITGRLYDRYGIRPLAIIGVLLVLISSLGTSFLTTSTSIIYLTV VWAMRSIGLSCLMMPLVTWSVTQLTGKAIASASAVLTTLRTVAGAVGTSVSVALMSFIAN RGAAQQTVVASVGGVNATFISMSIIVVLMLIIILKSVKSSKTPEVVVAEDQKH >gi|225002566|gb|ACIZ01000013.1| GENE 91 77613 - 78257 451 214 aa, chain + ## HITS:1 COG:no KEGG:LC705_00149 NR:ns ## KEGG: LC705_00149 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 214 1 214 214 367 100.0 1e-100 MQRLRRLFHRHASTPADRTALMGTLAAGINFILALVKLGLGLVTGSLWLLLFGGYYLILS LARSSFLHHYSRSRQYDELPETKVFVQTAGLAYVVLGLAFTICAFIMYHDGYQARFGKIT AITVATIGFYKLTMAIIGFLRVRRLHHGALFFLKTFNLADGAMAIVLTQYALLSAQQEMA NQVTGIFGMGVGSLLVLIGLGALISTRFTDQTHD >gi|225002566|gb|ACIZ01000013.1| GENE 92 78687 - 78950 219 87 aa, chain - ## HITS:1 COG:no KEGG:LC705_00148 NR:ns ## KEGG: LC705_00148 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 87 2 88 88 139 100.0 4e-32 MIGIVGGIVVAIVANRINRPATKTRGIVTNTLGITFGALGAQAADQLLYEGPQLFGSQIV PAIVGGIVLAFVVIYAGKKWFRLGSTN >gi|225002566|gb|ACIZ01000013.1| GENE 93 79243 - 80325 1041 360 aa, chain + ## HITS:1 COG:PA4201 KEGG:ns NR:ns ## COG: PA4201 COG1181 # Protein_GI_number: 15599396 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Pseudomonas aeruginosa # 1 333 6 326 346 188 36.0 1e-47 MKIVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANT SKDLKISDAILTDADINKLRTDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATL DLNNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVK PTSGGSSVGTHIAHNQEELENGIADVFRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK VHSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFFANDK GVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIINGKLKLYAEGMTEAGIMTTANH >gi|225002566|gb|ACIZ01000013.1| GENE 94 80455 - 80706 240 83 aa, chain - ## HITS:1 COG:no KEGG:LC705_00146 NR:ns ## KEGG: LC705_00146 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 83 1 83 83 161 100.0 5e-39 MYTIQTAATIAGRGTVITIAPPIERIRAGDPVRLNGATVGKVCALEKARHPHHSNNQPCL SLLITEPVEVGDTIEFPKSQCWH >gi|225002566|gb|ACIZ01000013.1| GENE 95 80964 - 82040 1001 358 aa, chain + ## HITS:1 COG:MYPU_0940 KEGG:ns NR:ns ## COG: MYPU_0940 COG1619 # Protein_GI_number: 15828565 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Mycoplasma pulmonis # 1 354 22 375 377 340 46.0 2e-93 MKKPQTLKPHDQVAIVSLSAGTLGEAFAAHQRKLGIKRLEDMGLTPRFMPNALRGRDYLN AHPEARAADLKTAMTDPDIKGIICAIGGDDTYRIVPYLLDDPTFIKSVQTQPKIFTGFSD TTIDHLMFYQLGMTTFYGPNFLNDLAELDTHLLPYTAASFRHYFENPATTAITSSPTWYE ERIDFSADQLGVPRKAHPEQHGYLALRGHGQVTGTLLGGCLDSLHDLLYPVRYDDEPQVA KKYHLFPQDWTDKILFIETSEDKISPATYREYLGHLADHGVLQQVKAILVGKPQNETYFA DYQQVLLDVTQPYQTPILYNLNFGHAYPRTLLPYGLQATIDFDHRQLTVDEPYFSNPL >gi|225002566|gb|ACIZ01000013.1| GENE 96 82141 - 83121 657 326 aa, chain + ## HITS:1 COG:L125873 KEGG:ns NR:ns ## COG: L125873 COG0671 # Protein_GI_number: 15674037 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Lactococcus lactis # 13 311 6 306 307 152 35.0 7e-37 MDQTQKLNAPIRKHIFLIVAGILLLLLAAAAGFDWQISQTIGNMNDPFATLFQDVGLWTA PLIIMLSCNVVCHYALRSSQLAWYIRGLMVIGSVIYAGWELWAGYLKYAMTMVITSINDI NAGKPMGMANSDGSKLALPGGLSVILFLVLYVAVFAGSQYWLSRKSDEQLHYLLKVAVVA TLVCIMSDQIVNAMKTFWGRFRPYELNGNPAHFTSWFQPNGANGHMSFPSGHTQTAATIL TLTWFVDRDQPKRQRLVFWLTFAYGALMAYTRVRILAHFTGDVTMSLILTWSMILILGAV AQLPLVDWEALTMRSKSKKLDTEPAA Prediction of potential genes in microbial genomes Time: Wed May 25 19:24:18 2011 Seq name: gi|225002565|gb|ACIZ01000014.1| Lactobacillus rhamnosus LMS2-1 contig00017, whole genome shotgun sequence Length of sequence - 11882 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 6, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 184 - 243 3.0 1 1 Tu 1 . + CDS 343 - 951 243 ## COG1396 Predicted transcriptional regulators 2 2 Tu 1 . - CDS 965 - 1261 189 ## LGG_00139 hypothetical protein 3 3 Tu 1 . - CDS 1437 - 1661 186 ## LGG_00139 hypothetical protein - Prom 1705 - 1764 5.3 - Term 1765 - 1813 10.6 4 4 Tu 1 . - CDS 1844 - 4027 1948 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 4133 - 4192 5.0 - Term 4254 - 4301 2.6 5 5 Op 1 . - CDS 4312 - 5073 692 ## LC705_00139 ABC transporter permease 6 5 Op 2 . - CDS 5070 - 5999 272 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 7 5 Op 3 . - CDS 5996 - 6211 275 ## LC705_00137 hypothetical protein 8 5 Op 4 3/0.000 - CDS 6260 - 7381 1035 ## COG1396 Predicted transcriptional regulators - Prom 7404 - 7463 3.9 - Term 7508 - 7564 16.5 9 6 Op 1 4/0.000 - CDS 7611 - 8825 843 ## COG0477 Permeases of the major facilitator superfamily - Prom 8858 - 8917 4.8 - Term 9127 - 9164 2.2 10 6 Op 2 5/0.000 - CDS 9178 - 9522 428 ## COG0640 Predicted transcriptional regulators - Prom 9546 - 9605 3.4 11 6 Op 3 . - CDS 9618 - 11516 1674 ## COG2217 Cation transport ATPase - Prom 11568 - 11627 5.9 Predicted protein(s) >gi|225002565|gb|ACIZ01000014.1| GENE 1 343 - 951 243 202 aa, chain + ## HITS:1 COG:SA2495 KEGG:ns NR:ns ## COG: SA2495 COG1396 # Protein_GI_number: 15928290 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 97 1 97 189 61 34.0 9e-10 MNFSKQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLDT LILDDSELNEKLIKDSKVSRHQLVMAVLTTADAMMAGMAATTMFGFFPRWLAELIWWVFV AVQFSFSYAITPKSVDIFADWSVRSRRFMGVGFSALGLLNLLTGLVLVWFNGIDLQLILI IIAGAGLLILTKPIWPKRQPAK >gi|225002565|gb|ACIZ01000014.1| GENE 2 965 - 1261 189 98 aa, chain - ## HITS:1 COG:no KEGG:LGG_00139 NR:ns ## KEGG: LGG_00139 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 98 134 231 231 204 97.0 8e-52 MVYLGRDDNARYFKLDGLVYRYSGPIQIGEQAALSGYRFRLKDRGYTQMGFINPSKNFTA ALVIPRNRIEQHYHPSKEVVVTLEKMDGEWTTEKVYRK >gi|225002565|gb|ACIZ01000014.1| GENE 3 1437 - 1661 186 74 aa, chain - ## HITS:1 COG:no KEGG:LGG_00139 NR:ns ## KEGG: LGG_00139 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 69 1 69 231 130 94.0 1e-29 MIAGVFTVKQWQTAEQWNNGWLIVAIIVILFIIFCLLLVSFYVPNPWKRRIIVPAILICM SLTVYSWLRKGQCG >gi|225002565|gb|ACIZ01000014.1| GENE 4 1844 - 4027 1948 727 aa, chain - ## HITS:1 COG:SPy2110 KEGG:ns NR:ns ## COG: SPy2110 COG1328 # Protein_GI_number: 15675860 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pyogenes M1 GAS # 7 717 16 725 732 1001 65.0 0 MIEFYTQIKKRDGRIVDFDATKISTAITKAAESVAKLSPRDVLTIDHLTDTVTAKIRDRY HDDVEIAEIQTVVEQTLIAAEKYDWAEAYTQYRLKRDLARKQKQDVNYNVARLVNRDKSV VNENANKDSRVFSTQRDLTAGAVAKAIGLKMLPPAVANAHLRGDIHWHDLDYTPFMAETN CCLIDFDYMLNHGFSIGNAEVEPAHSIQVAVTQMTQIIANVASSQYGGCSSDRTDQVLAP FAEKNYQKHLREFGDVIDDPTTLKALAVKQTKKDIYDALQTLEYQVNTLYSTQGQTPFVT VGFGLGTSWIEREIQKDILKIRILGLGKERRTAIFPKLVFTLKRGLNLNSEDPNYDIKQL AIECATKRMYPDVVSYDTIKRLTGSFKAPMGCRSFLQGWTDPKTGKEVNAGRMNLGVITV NLPRIAMESKGDKDKFWKIFEERMRICKEGLLYKIERTKQATPESAPILYKYGAFGHRLA DTDSIDDLFKNGRATVSLGYIGLYEVGTVFYGSAWEKNPDAKAFSVSIVKALDDHCKAWE KQYGYHFSVYGTPSESLTDTFCREDTKKFGIVKDITDKEYYTNSFHYDVRKSPTPFEKLD FEKDYPQYSAGGFIHYCEYPNLKQNPKALEAVWDYAYDKIGYLGTNTPIDQCFKCGFKGE FTATAKGYECPECGNHDPATCDVVKRLCGYLGNPNKRPMVHGRQEEIIHRKKHITFSLNQ VANRRDK >gi|225002565|gb|ACIZ01000014.1| GENE 5 4312 - 5073 692 253 aa, chain - ## HITS:1 COG:no KEGG:LC705_00139 NR:ns ## KEGG: LC705_00139 # Name: not_defined # Def: ABC transporter permease # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 253 1 253 253 441 100.0 1e-122 MTAAMVFTKKELIESWRTHRFLILTVVFLIFGILSPLMAKLLPELLKSGLGGVKVTVPTP TSLDSWTQYYKNLTQMGIYVFALMLGGCVSQEIQQGTLINLVTKGLPRWSVIVAKSVVGL LQWLWCIGLAFAVTWAYTAYYFPDTHSPHVLLAVLPLVIFGFFFLSLIVFGSTLATNQYG GLLFTVIIVALLYVAQMIKKGHNLNPISLISDNMKILVDAADFAKLWPAMVVALVIGGGL FFAAIKVLNLKRL >gi|225002565|gb|ACIZ01000014.1| GENE 6 5070 - 5999 272 309 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 4 309 5 303 311 109 26 1e-23 MTILTLQHVSKRFGSKQVLKDLNLTLPTGSIYGFVGENGAGKTTTMKLILGLVRADQGKI EVAGKPVRFGDTTTNSVTGYLPDVPAFYPYMTAPEYLRLCGELTGLRGAVLTKRVSSMLD RVSLAGVKQRVGGFSRGMRQRLGIAQALLNTPQLLICDEPTSALDPQGRTEFLALLASLR GQTTILFSTHILSDVERICDHVGILHQGRLQVSASLADLKKQYAKPQLQLTFETPSRAQQ AAALLASQQHDGYVKQVRTSGSEVTVAYSESYAATADRVLTALLTAQLVPSSFRRREANL EQVFMEVIK >gi|225002565|gb|ACIZ01000014.1| GENE 7 5996 - 6211 275 71 aa, chain - ## HITS:1 COG:no KEGG:LC705_00137 NR:ns ## KEGG: LC705_00137 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 71 1 71 71 122 100.0 5e-27 MQTNWAFFGTYWPFLVPLIILEFGLMITAVVHVLRHPHYRIGNRTLWLVIVIFIQIIGPI AYFVFGREDQS >gi|225002565|gb|ACIZ01000014.1| GENE 8 6260 - 7381 1035 373 aa, chain - ## HITS:1 COG:CAC3472_1 KEGG:ns NR:ns ## COG: CAC3472_1 COG1396 # Protein_GI_number: 15896711 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 3 119 1 117 125 77 29.0 4e-14 MEINVGAVISAFRKQKGVTQEALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI DQLMAYDAQLQPSEIRRIYTSLKQAFETQPPARVLTSIRNLIRRYYSCYPFLLQMGLLLL NNYDLLPGESQTAKMKTYVTEAQQLFVRVHQNSGDLRLTAKAVELEGYSLLLLKRPDEVL ALLGEYVPEQLPADSLIAGAFQQKGDLKRAIATSQSGLMQDLSIMMSQLTNYMTLLGDDP QRLKKTYQRGQAIAAAFDLVHLNTAVWANFQLAALTSFAQQVQADNAEAVLRRFVRALMT GELTWTLHGDAYFDAIDPWLNQLDLGPQMPRATSHAKQQVITFILESPTLAALRQRPGIR PLLRELEQLKTQK >gi|225002565|gb|ACIZ01000014.1| GENE 9 7611 - 8825 843 404 aa, chain - ## HITS:1 COG:CAP0086 KEGG:ns NR:ns ## COG: CAP0086 COG0477 # Protein_GI_number: 15004790 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 11 388 10 388 401 252 37.0 9e-67 MFGRPISNRYKYYWYTVFTQLRFTRIINIIFVVQFLKFNLVQFGLLQSVFLLSQFASELP SGVLGDLFRKKAVIIWGLVLLTISPMVMISASLVGHNFMFTTLLGAFLLEGVGNALLSGA DEALFFEAIRRDGLAKQYAKIRGEAQFIGAIVVGAATFLGGVLYAINRVLPYFFQSLMVA VAGLVIFSVREDKRVTATIEKVKEPSQVKNILTVFAEIKASTNVLSLFIFTALISAMVNA IFAMLPAYFSKLGFSSSANGLIFMLFSFVGGLVAAQAYRLTKVSSKTLALIVAGILGLGV ILQMQASIYFFSAGVCLLYITVDILDPIVLEMLNLWVKDSARATLISGLSFATSLVTMLL NPLIGMLIQVYGTIPMLVMVSMFAIVMILFFVHFSLKSKPQESE >gi|225002565|gb|ACIZ01000014.1| GENE 10 9178 - 9522 428 114 aa, chain - ## HITS:1 COG:CAC2242 KEGG:ns NR:ns ## COG: CAC2242 COG0640 # Protein_GI_number: 15895510 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 6 110 18 122 122 85 40.0 1e-17 MTTNDVHAVAANNSEIPDDADLRDVLDVFKTMSDPTRMRIILAIAQGPITVNDLAAMLDL GQSTVSHQLRLLKQARLVAGERSGKQIYYHLVDDHVLEIYALTKAHIEEKQHGQ >gi|225002565|gb|ACIZ01000014.1| GENE 11 9618 - 11516 1674 632 aa, chain - ## HITS:1 COG:lin0644 KEGG:ns NR:ns ## COG: lin0644 COG2217 # Protein_GI_number: 16799719 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 30 614 37 620 625 486 46.0 1e-137 MITNKPIGFYLLGVAAFIGGLFITQPLARAGLLIAAAVAAGYHVIAEGVIETIQDSKKQH RFAPNIHILMALAAVGAIAIGSYEEAAMLILIFAGADFLEDYVENKSRKEITALLAMAPL EARRYGHDGEFEVVPVAALKIGDRLQILNGAQVPTDGVIIAGTASLDESAISGESIPREK QVGDEVFGGTLNGQSTFDMRVTKASDETVFAKIIQMVQTAQATPTKMASVIQRFEPLYVK VVLAALPLVFLAGPLLLHWSWMTSVYRTIVFLVAVSPCALAASAVPATLAGISNLARHGV LFKGGRYLANLTQLKAIAFDKTGTLTKGTPTVTDSEFAADVDQAAVMAVVTAMEKQSNHP LANAIVTHYPATDVVIDTVHNEIGKGLTADYQGHTYTVGKPQRFTHAPALFRQRAMALGQ QGKTVIFVAVDQTVVGLIALMDEAKSSAKAAIAYLKHHDIQPVMITGDAKQTGEAVAADL GIKQVVTNVLPDQKVAVVKQLQETMRPIAMVGDGVNDAPALANAEVGIAMGSGTDVAIDV ADVVLIKNDLSRLAFAHQVSTKMNRIVVENLVFSMAVVLLLVTLNVLQLTNIAWGVFLHE GSTLMVILNGLRLLLTEEGTHSQTPHVQPQLG Prediction of potential genes in microbial genomes Time: Wed May 25 19:24:33 2011 Seq name: gi|225002564|gb|ACIZ01000015.1| Lactobacillus rhamnosus LMS2-1 contig00018, whole genome shotgun sequence Length of sequence - 15871 bp Number of predicted genes - 12, with homology - 11 Number of transcription units - 7, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 68 - 1360 1135 ## COG0104 Adenylosuccinate synthase - Prom 1450 - 1509 5.0 - Term 1503 - 1547 -0.6 2 2 Tu 1 . - CDS 1575 - 2630 841 ## LC705_00129 metal-dependent hydrolase - Term 2674 - 2726 10.2 3 3 Op 1 36/0.000 - CDS 2822 - 6046 2529 ## COG0577 ABC-type antimicrobial peptide transport system, permease component - Prom 6074 - 6133 2.0 4 3 Op 2 . - CDS 6138 - 6842 258 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 6877 - 6936 5.8 5 4 Tu 1 . + CDS 7138 - 7743 530 ## COG1309 Transcriptional regulator + Prom 7746 - 7805 4.5 6 5 Tu 1 . + CDS 7851 - 8720 650 ## COG1737 Transcriptional regulators + Term 8732 - 8762 1.0 + Prom 8744 - 8803 4.3 7 6 Op 1 2/0.000 + CDS 8927 - 9973 620 ## COG3589 Uncharacterized conserved protein 8 6 Op 2 9/0.000 + CDS 10030 - 10962 852 ## COG2103 Predicted sugar phosphate isomerase 9 6 Op 3 . + CDS 10949 - 12940 1880 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 12967 - 13011 4.6 - Term 12818 - 12870 2.1 10 7 Op 1 . - CDS 12875 - 12997 94 ## 11 7 Op 2 . - CDS 13062 - 14225 1138 ## LGG_00124 hypothetical protein 12 7 Op 3 . - CDS 14288 - 15673 1380 ## COG0305 Replicative DNA helicase - Prom 15718 - 15777 3.5 Predicted protein(s) >gi|225002564|gb|ACIZ01000015.1| GENE 1 68 - 1360 1135 430 aa, chain - ## HITS:1 COG:SP0019 KEGG:ns NR:ns ## COG: SP0019 COG0104 # Protein_GI_number: 15899967 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 426 1 427 428 657 73.0 0 MGTVVIVGTQWGDEGKGKITDFLSQGAKVVSRYQGGDNAGHTIHANGQVYKLRLIPSGVL YPHQLSVIGNGVVVNPKSLVGELARLAEQGVTGENLRISDRAHVILPYHIKLDKLQEEAK GADKIGTTNRGIGPAYMDKAARVGIRMADLLDKDIFAERLKANLKAKNEEFVKVYNSTPM TFDEIFEEYYNYGQQLKQYVCDTSIVLNDAIDQGEHVLFEGAQGIMLDIDQGTYPFVTSS NPAGGVTVGAGVGASKIDRVVGVAKAYTSRVGDGPFPTELLDKTGDFIRNAGHEFGTVTG RPRRIGWFDAVVVRHSRRVAGITDLCLNSIDVLTGLDTVKICVAYERDGERIENYPASLK FLSECKPVYEELPGWKEDITHAKTLADLPENARHYVERITELLGVDLLTFSVGPDRDQTN VIANVWDKVK >gi|225002564|gb|ACIZ01000015.1| GENE 2 1575 - 2630 841 351 aa, chain - ## HITS:1 COG:no KEGG:LC705_00129 NR:ns ## KEGG: LC705_00129 # Name: not_defined # Def: metal-dependent hydrolase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 351 1 351 351 677 100.0 0 MDGTIDFHTHFLPKKYAQALKKHIPGDPDGWPTPGWDEHLTLGFMRKNHISYSILSLSSP HFNFGDKDETVEIARDANETGSQVTQRHRDKLGYFASLPLPYLNETLEEIDFALDHDALG FTVPTNTRGLYFGTPIFDPIYARLNQKKAIVLMHPNRPSQGPLNVNIDMPTPLMGFFMDT TMTFMNLIRYHFFDRYPDIKLIVPHAGAFLSILADRDAAFVKQQYNADMYAILRHVYFDT AGAVFPRQLPMLLTLADESHVLYGSDIPYTAPMIAAQMLKLFEPETYRAKMANRITKLKH FDPVMTHFKKFRALPTVLNMSSKMLTGAEILSPEMAQDILVNNGQRLLGKI >gi|225002564|gb|ACIZ01000015.1| GENE 3 2822 - 6046 2529 1074 aa, chain - ## HITS:1 COG:lin1187 KEGG:ns NR:ns ## COG: lin1187 COG0577 # Protein_GI_number: 16800256 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 1 1074 28 1136 1136 592 34.0 1e-168 MMLGSFALVGLWVAGPDMRATGATYFKQYNLADLTVIGEDGLDSHDQKTIRATTGAKQVE FGYLKDVTLKGTHSSFRIMSKPDKISKYKLASGRMPTKTNEIAIDANYKGKYKLGDTIKF VQRADQTGSKVLKRTQFRIVGFVYSPEVLSAINKGDSTSGSGDLKGYGVVTANNFDSDFY MMARITYQNTQKLDPYSDQYTDRIQSHKTALNKRLKDAPTDRLAAIKKQYQKKIDAGQKK LDEAKAQLDSAKEQLTTGQQQLASAKQQITAKQQELDTAVKNGQAQIASGEAQLQQAATQ LSQSESQLASAKQQLEASQQQLDAKQQDLASAKQQLDTANQQLANSQAQLAAAKQEIEAA LANNPQIAQLPAFQQKQAQYQNGIAQYNQGLEQYQNNLQAYNNQVAAWNTANNQLQQKYQ EYNSGASQFQQGQQSYAAKQQELEQAKQSLATQQQSGQQQIEAAKQEMASNEATLKTKQA EYDQQAPNAEKEIQSNSLKLEDAKEALKNLKAPTYTVDTRRETPSGQGYMVYDNTSNIID SLANIFPFFMYFVAALVTFTTMTRFVDEERINSGTLVALGYSRHDVIKKFTVYGFLSSLI GSILGIINGHILLPLIVYNAYHGGVNVPPIELHFYPGISIAALLLAMISAVLPAWWVARR ELKERPAQLLLPKPPANGSKILLERVGFIWKRMSFTHKVTARNIFRYKKRMFMTIFGVAG SVTLLFSGLAVQHSIGGVNDRQFNDIIKYDMIVAQKDNITKNQQTSLDKLFNENAVKKTK SVHYETVTKNAGANHDRQDITMIVPQSTKNFDSYIHLATRKRQNKLTLQDNGGIISERLA KLLNVDVGDTITVKEADGTRRKVKITGITEMYMGHFLFMNKTAYQKAFNTNYKVNGHLVT LNDRSISNTRAHAAQFMKEDGVKGVVQNSSLRNQITTVVKSLNKIMGVLIVLAAVLGVVI LYNLTNINVAERMRELSTIKVLGFYDKEVTLYIYRETILLSIIGIFVGWGFGELLHEYII TVVPPNNVMFNPALSAPTFIIPTIVITIITVALGFFVNYSLKKVNMLEALQSVD >gi|225002564|gb|ACIZ01000015.1| GENE 4 6138 - 6842 258 234 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 211 1 215 223 103 33 6e-22 MAKFITVKDETRQYGSGESTVYANHNVSFEINSGEITVILGASGAGKSTLLNILGGMDKA TSGQVTVAGENISQYDARQLTTFRREQVGFVFQFYNLVPNLTALENVELASEIAPDALDP QKTLVDVGLGKRMNNFPAQLSGGEQQRVAIARAIAKNPSLLLADEPTGALDYKTGKSILK LFEDFSHQTDKNVIIVTHNSLIKPMADHVIEIHDGEVKDDYHNDQPTPVEQLKW >gi|225002564|gb|ACIZ01000015.1| GENE 5 7138 - 7743 530 201 aa, chain + ## HITS:1 COG:BH0719 KEGG:ns NR:ns ## COG: BH0719 COG1309 # Protein_GI_number: 15613282 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 10 195 12 188 188 78 31.0 9e-15 MKKAEQTAQTKQALVRSLIAVGRKKTLAKVSVADLTRASGISRGTFYLHYLDKDDLVAKT EAALLKELTDCLDFGMDTSMDPSTLATGQRSPLMVNMVHLINQQRDLCQFLLSPAGDPSF LGRIAKLLRDKILGHLAELKGEAHFIHDIPDPYVSQIIVYGIIDIIQLWLNETNPRSEAE IVDILMKTRFLSPYQLLALEK >gi|225002564|gb|ACIZ01000015.1| GENE 6 7851 - 8720 650 289 aa, chain + ## HITS:1 COG:SA0187 KEGG:ns NR:ns ## COG: SA0187 COG1737 # Protein_GI_number: 15925897 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 13 284 14 284 291 134 29.0 3e-31 MSVEGNYQSTRGELSEAEKKIVDYVLNHTQDVLTMSVYELAKAAGTSPATVSRAAQRLQF NGYNELKMQLAADLNGEVGEINHQEIQKNESLTTIKTKLKTNATRSLAETVDQINENTVQ TIIDLIHRSRQILLFGVGASYLSVQNIAQKWSRLGYACHFSDDLNLFLPVAATADPKHTL TWFISNSGESPEAVLGAKLAKKAGLPVVATTKLGSNALTHYANIVIQTSQPMEAPNRFAA TQSLHAQFMLIDILYYAYVSRYYDAAKKQTDDSKAAVTAYKEFMRHGFK >gi|225002564|gb|ACIZ01000015.1| GENE 7 8927 - 9973 620 348 aa, chain + ## HITS:1 COG:L143292 KEGG:ns NR:ns ## COG: L143292 COG3589 # Protein_GI_number: 15673111 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 347 1 346 353 274 41.0 2e-73 MIGFSCYLNDSATEQQAAYLKQMQQAGFTGVFTSLQLSEAKPEIIRQRLDQLVANCHQLG LTIMADVSAASLQRLGIALHDGKAIQALGLDGLRIDDGIDMTTVAALSHTMAIALNASTL SACMIDQLANAKANLCHIEAWHNFYPRPETGLDPAWFAQKNKWLHALGFKTMAFISGDAQ QRGPLFAGLPTLEAHRGLLPLAAYLELRQLAIDHVYVGDPQLSPRSIAAFQSYVHDQVLL IQVQTDDERLLHLTWHSRPDIAQKVVRLAEARLEHIFATPQPAQTDPRPRGSITLDNSAY GRYAGELQLTRCDLPADPRVNVIGKIEPSNLPLLDQIGPHQAIRFKIS >gi|225002564|gb|ACIZ01000015.1| GENE 8 10030 - 10962 852 310 aa, chain + ## HITS:1 COG:L144334 KEGG:ns NR:ns ## COG: L144334 COG2103 # Protein_GI_number: 15673112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Lactococcus lactis # 4 298 2 296 297 333 61.0 2e-91 MATINLDQMTTETRNEKTMQLDTMSVHDFVTVMNAEDQTVAQSVSHALPAIEAAIETITT SFKRGGRLFYIGAGTSGRLGVLDAAECVPTFGTAPEMVQGLIAGGMKAMTVAVEGAEDSV ALGQSDLKERHLTQNDTVVGIAASGRTPYVIGGLDYAQSIGAATVSLACNHNAAISQHAQ IAIEVPAGPEVLTGSTRLKAGTAQKLVLNMLSTGAMVGIGKVYKNLMVDVQPTNEKLVVR SQRIIQQATGCDAKTAQTAFEAANRHVKLAIVMILTNQPSTTAQTLLNQANGFISKAVAL SQEETEDGAR >gi|225002564|gb|ACIZ01000015.1| GENE 9 10949 - 12940 1880 663 aa, chain + ## HITS:1 COG:L145238_2 KEGG:ns NR:ns ## COG: L145238_2 COG1263 # Protein_GI_number: 15673113 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 124 461 10 348 348 377 65.0 1e-104 MGQDKYQAMGDGIYAQVGGPQNVAKLIHCMTRVRMTIKDEAKVNVAGLKKVPGVLGVVQE ETLQVIVGPGTVNKVAQAMVAKVGVGLGDPFPGSASVGNDHQDNKSAVEAKAAEVHAAHK AALKQTWWRAALKHISAIFIPLIPAFVGAGLISGVAGILVNMMAAGDLPKSWTEFITVLK VINGGLFTFLNIYVGINAATEFGATAGLGGIVGGLIYLPGVVAPVTITNIFTHQPLAAGQ GGIIGVIFAVWLLSLVEKQLHRFIPDAIDIIFTPMLSLLSIGVLTIFLIMPFAGWLSTSL VGSINWILQVGGPFSGFVLGLAFLPMVMLGLHQILTPIHLEMIKNLGFTALLPILAMAGG GQVGAALALWVKCRKNKQLTRLIKGALPVGILGVGEPLIYGVSLPLGRPFITACVGGGIG GAVIGLFGNVGAITIGPSGAALIPLIANHQWLGYVFGLLASYVGGFIATYFFGVPKSAMV ATTADGTVIETATPQPEQVNQPAATPVTTQPGTTEFVAPATGQLEALSAVEDDVFSQKMV GDGFAVEPTSGTIVAPVSGTIVSVLPSKHAWTMTTATGLEILVHMGLDTVELNGAPFTFS VKDQDTVTAGQPIATMDLAAVQAAGKKTTVMTIITNMDHVASLTDFAPRNITAGDDVLAV TSK >gi|225002564|gb|ACIZ01000015.1| GENE 10 12875 - 12997 94 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVFTVKVKIMLFIFLPITPLFASNGKNIIARCDVARGEVG >gi|225002564|gb|ACIZ01000015.1| GENE 11 13062 - 14225 1138 387 aa, chain - ## HITS:1 COG:no KEGG:LGG_00124 NR:ns ## KEGG: LGG_00124 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 387 1 387 387 753 100.0 0 MDAILMSLMTALNEHLLINVYQRDTDDFYTGYVQVLGHDAVVLGTYNDSGIADGCALIAF SAIDQVEFAGDDLDNMNFRIDLAQSEHFLTLQGKETPYKFDATKSLIWQLAQQAKASGQM IMVVVADDDAYLEGRVTAVADDRFSMAIFNKFNYTDVRALQVDFSDILVMEFHGLDLKLE TELVRKRDQLHHVPTKLYQNDGQLEGVFQNALAENRLISVVPKGPEDQFFVGRVKAVNEH VVVLSLKDMAGQFGGYILMTLPSIQNVATASDYLQTIGFYEQWDQTHHFSQQPVLNADRE FDPNDNLVKAIISEAAGFERVVRIKVADSDEHFLGYPEHVDETDFDLNLVGPDSGETVRI RYGQIREIAFGHIFAYLQEAQLKNADR >gi|225002564|gb|ACIZ01000015.1| GENE 12 14288 - 15673 1380 461 aa, chain - ## HITS:1 COG:BS_dnaC KEGG:ns NR:ns ## COG: BS_dnaC COG0305 # Protein_GI_number: 16081096 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Bacillus subtilis # 1 454 1 441 454 491 59.0 1e-139 MDNQLIEQQPPHSDEAERAVLGGIFLNADTLPDAQEYVTADDFYKKSHRLLFQAMTDLQD NGTAIDTVTVTDYLDNHNQLDDIGGAGYITDLVASTPIASNVVYYAKIVQQKSTLRKLIS TAQSIASRSYTEQDDVEGLVEDAERQIMDVSENRNQAGFKQIKDVLNQAMAQIDQLYQND QTITGLPTGFRDLDKITTGLHEDEMIILAARPAVGKTAFALNIAQNVGTKTDKSVAIFSL EMGAEQLVNRMLCSEGSIDANHLRTGQLNEEEWQNLIIAMGSLSKAKIYMDDTPGIRMAE IRAKCRRLAREQGDLGLIIIDYLQLIEGSGQENRQQEVSAVSRQLKKLAKELHVPVIALS QLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRDAEGDDDEDQDSGDEGDD NVGEVEVIIEKNRSGPRGTVKLLFVKSYNKFTNIAYNGPDQ Prediction of potential genes in microbial genomes Time: Wed May 25 19:25:13 2011 Seq name: gi|225002563|gb|ACIZ01000016.1| Lactobacillus rhamnosus LMS2-1 contig00019, whole genome shotgun sequence Length of sequence - 94409 bp Number of predicted genes - 84, with homology - 82 Number of transcription units - 46, operones - 21 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 12 - 41 -0.4 1 1 Op 1 9/0.111 - CDS 57 - 512 746 ## PROTEIN SUPPORTED gi|199598998|ref|ZP_03212406.1| Ribosomal protein L9 2 1 Op 2 . - CDS 529 - 2535 854 ## PROTEIN SUPPORTED gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 3 2 Op 1 45/0.000 + CDS 2859 - 3794 483 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 4 2 Op 2 . + CDS 3808 - 4548 529 ## COG0842 ABC-type multidrug transport system, permease component 5 2 Op 3 . + CDS 4551 - 5507 466 ## LC705_00115 hypothetical protein + Term 5640 - 5678 -0.7 + Prom 5650 - 5709 5.2 6 3 Tu 1 . + CDS 5744 - 6385 455 ## COG1309 Transcriptional regulator - Term 6654 - 6690 3.0 7 4 Tu 1 . - CDS 6721 - 7347 446 ## LC705_00113 transposase, IS4 family protein - Prom 7413 - 7472 2.7 - Term 7405 - 7447 -0.1 8 5 Tu 1 . - CDS 7482 - 8009 312 ## LC705_00112 hypothetical protein - Prom 8104 - 8163 3.4 + Prom 8874 - 8933 1.9 9 6 Tu 1 . + CDS 8966 - 9154 80 ## LC705_00111 hypothetical protein 10 7 Op 1 . - CDS 9712 - 10635 503 ## LC705_00110 drug/metabolite transporter (DMT) superfamily permease 11 7 Op 2 . - CDS 10583 - 10996 313 ## LC705_00109 ADP-ribose pyrophosphatase - Prom 11027 - 11086 6.5 12 8 Tu 1 . - CDS 11393 - 11542 216 ## LGG_00116 hypothetical protein - Prom 11657 - 11716 5.2 - Term 11689 - 11740 3.3 13 9 Op 1 1/0.222 - CDS 11758 - 12816 993 ## COG0136 Aspartate-semialdehyde dehydrogenase 14 9 Op 2 . - CDS 12824 - 13831 728 ## COG0253 Diaminopimelate epimerase 15 9 Op 3 . - CDS 13834 - 15213 1131 ## COG0527 Aspartokinases - Prom 15437 - 15496 3.6 16 10 Op 1 . + CDS 16179 - 17522 1164 ## COG0019 Diaminopimelate decarboxylase 17 10 Op 2 6/0.111 + CDS 17532 - 18236 729 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase 18 10 Op 3 . + CDS 18243 - 19394 1021 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 19 11 Op 1 6/0.111 + CDS 19719 - 20624 858 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 20 11 Op 2 . + CDS 20621 - 21388 608 ## COG0289 Dihydrodipicolinate reductase + Term 21396 - 21450 10.1 - Term 21387 - 21435 3.3 21 12 Tu 1 . - CDS 21528 - 22118 453 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes - Prom 22138 - 22197 4.9 22 13 Tu 1 . - CDS 22737 - 23618 509 ## LC705_00097 transcriptional regulator xre family - Prom 23716 - 23775 4.2 + Prom 23633 - 23692 7.0 23 14 Op 1 . + CDS 23888 - 24574 446 ## COG1131 ABC-type multidrug transport system, ATPase component 24 14 Op 2 . + CDS 24571 - 25485 305 ## LC705_00095 hypothetical protein 25 14 Op 3 . + CDS 25490 - 26731 546 ## LC705_00094 ABC transporter + Prom 26949 - 27008 3.9 26 15 Tu 1 . + CDS 27043 - 27747 363 ## LC705_00093 hypothetical protein 27 16 Tu 1 . - CDS 27756 - 28343 512 ## COG1309 Transcriptional regulator + Prom 28397 - 28456 3.2 28 17 Tu 1 . + CDS 28519 - 30345 1181 ## COG0477 Permeases of the major facilitator superfamily + Prom 30704 - 30763 2.7 29 18 Op 1 . + CDS 30838 - 30954 97 ## 30 18 Op 2 21/0.000 + CDS 30935 - 31960 855 ## COG0547 Anthranilate phosphoribosyltransferase 31 18 Op 3 9/0.111 + CDS 31957 - 32736 576 ## COG0134 Indole-3-glycerol phosphate synthase 32 18 Op 4 23/0.000 + CDS 32740 - 33339 566 ## COG0135 Phosphoribosylanthranilate isomerase 33 18 Op 5 37/0.000 + CDS 33323 - 34543 1112 ## COG0133 Tryptophan synthase beta chain 34 18 Op 6 . + CDS 34536 - 35345 424 ## PROTEIN SUPPORTED gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc + Term 35398 - 35442 5.3 - Term 35518 - 35562 0.6 35 19 Tu 1 . - CDS 35571 - 35744 171 ## LGG_00097 hypothetical protein - Prom 35801 - 35860 5.7 36 20 Tu 1 . - CDS 35990 - 36865 241 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 37 21 Op 1 1/0.222 - CDS 36978 - 38246 690 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 38 21 Op 2 . - CDS 38257 - 39048 528 ## COG1737 Transcriptional regulators 39 21 Op 3 1/0.222 - CDS 39060 - 39869 538 ## COG0383 Alpha-mannosidase 40 22 Op 1 1/0.222 - CDS 40008 - 41681 932 ## COG0383 Alpha-mannosidase 41 22 Op 2 7/0.111 - CDS 41689 - 42147 300 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 42 22 Op 3 . - CDS 42190 - 43683 1400 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 43878 - 43937 4.3 + Prom 43983 - 44042 2.4 43 23 Op 1 . + CDS 44101 - 44829 418 ## COG1266 Predicted metal-dependent membrane protease 44 23 Op 2 . + CDS 44908 - 45171 188 ## LC705_00075 hypothetical protein + Term 45181 - 45227 11.2 - Term 45173 - 45211 3.1 45 24 Op 1 . - CDS 45250 - 45909 713 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 46 24 Op 2 . - CDS 45962 - 46540 506 ## LC705_00073 DNA-binding ferritin-like protein - Term 46796 - 46824 -0.2 47 25 Op 1 15/0.000 - CDS 46877 - 47104 370 ## COG2608 Copper chaperone 48 25 Op 2 . - CDS 47124 - 48980 1679 ## COG2217 Cation transport ATPase - Prom 49163 - 49222 3.4 + Prom 49055 - 49114 3.8 49 26 Op 1 24/0.000 + CDS 49206 - 50453 1255 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 50 26 Op 2 13/0.000 + CDS 50456 - 51085 751 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 51 26 Op 3 13/0.000 + CDS 51097 - 52026 848 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 52 26 Op 4 . + CDS 52026 - 52688 735 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component + Term 52713 - 52745 1.1 + Prom 52731 - 52790 2.8 53 27 Tu 1 . + CDS 52966 - 53208 200 ## LC705_00066 hypothetical protein + Prom 53449 - 53508 5.6 54 28 Op 1 . + CDS 53532 - 54374 900 ## LC705_00065 hypothetical protein 55 28 Op 2 . + CDS 54374 - 54820 479 ## LC705_00064 hypothetical protein 56 28 Op 3 . + CDS 54821 - 56152 929 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 57 28 Op 4 . + CDS 56092 - 56856 656 ## LGG_00070 hypothetical protein + Term 56877 - 56906 -0.3 + Prom 56974 - 57033 7.9 58 29 Op 1 3/0.222 + CDS 57063 - 57665 537 ## COG1309 Transcriptional regulator 59 29 Op 2 . + CDS 57662 - 60910 2418 ## COG2409 Predicted drug exporters of the RND superfamily + Term 60982 - 61022 5.6 - Term 61021 - 61049 -1.0 60 30 Tu 1 . - CDS 61103 - 61477 292 ## LC705_00059 hypothetical protein - Prom 61505 - 61564 4.5 61 31 Tu 1 . - CDS 61707 - 62393 415 ## COG1309 Transcriptional regulator - Prom 62418 - 62477 5.5 + Prom 62340 - 62399 4.8 62 32 Tu 1 . + CDS 62425 - 63594 516 ## COG0657 Esterase/lipase + Prom 63628 - 63687 3.4 63 33 Tu 1 . + CDS 63916 - 65286 1041 ## COG0477 Permeases of the major facilitator superfamily + Term 65329 - 65375 2.7 64 34 Tu 1 . - CDS 65505 - 65921 394 ## LC705_00055 FMN-binding protein - Prom 65944 - 66003 3.0 65 35 Tu 1 . - CDS 66049 - 66378 331 ## LC705_00054 hypothetical protein - Prom 66556 - 66615 4.3 66 36 Op 1 . - CDS 66702 - 69221 2230 ## LC705_00053 galactosidase 67 36 Op 2 . - CDS 69253 - 70272 916 ## COG0524 Sugar kinases, ribokinase family 68 36 Op 3 . - CDS 70340 - 71032 651 ## COG1802 Transcriptional regulators - Prom 71114 - 71173 7.8 69 37 Op 1 . + CDS 71445 - 72740 1226 ## COG0477 Permeases of the major facilitator superfamily 70 37 Op 2 . + CDS 72788 - 74365 1252 ## COG5520 O-Glycosyl hydrolase + Term 74370 - 74433 12.4 + Prom 74417 - 74476 6.0 71 38 Op 1 7/0.111 + CDS 74566 - 76200 1754 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases 72 38 Op 2 1/0.222 + CDS 76204 - 77289 1194 ## COG1312 D-mannonate dehydratase 73 38 Op 3 1/0.222 + CDS 77289 - 78722 1167 ## COG1904 Glucuronate isomerase 74 38 Op 4 . + CDS 78747 - 79718 794 ## COG0524 Sugar kinases, ribokinase family - Term 79366 - 79415 3.4 75 39 Tu 1 . - CDS 79632 - 79793 65 ## 76 40 Tu 1 . + CDS 79792 - 80442 665 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase + Term 80504 - 80545 2.1 - Term 80654 - 80702 12.2 77 41 Tu 1 . - CDS 80772 - 85250 3549 ## LC705_00043 family 59 glycoside hydrolase/fibronectin type III domain-containing protein - Prom 85378 - 85437 5.6 - Term 85566 - 85619 11.2 78 42 Tu 1 . - CDS 85685 - 87496 1708 ## COG3250 Beta-galactosidase/beta-glucuronidase - Prom 87550 - 87609 5.8 - Term 87704 - 87738 3.0 79 43 Op 1 9/0.111 - CDS 87746 - 88075 229 ## COG4392 Predicted membrane protein 80 43 Op 2 . - CDS 88062 - 88772 763 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) - Prom 89004 - 89063 7.0 + Prom 88929 - 88988 6.4 81 44 Op 1 . + CDS 89116 - 91443 1653 ## COG3409 Putative peptidoglycan-binding domain-containing protein 82 44 Op 2 . + CDS 91496 - 92029 195 ## gi|229551061|ref|ZP_04439786.1| conserved hypothetical protein + Term 92136 - 92181 2.4 - Term 92455 - 92516 -0.5 83 45 Tu 1 . - CDS 92517 - 92990 328 ## LCABL_00440 hypothetical protein - Prom 93203 - 93262 3.8 - Term 93208 - 93254 -0.1 84 46 Tu 1 . - CDS 93474 - 94007 281 ## LC705_00037 hypothetical protein Predicted protein(s) >gi|225002563|gb|ACIZ01000016.1| GENE 1 57 - 512 746 151 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|199598998|ref|ZP_03212406.1| Ribosomal protein L9 [Lactobacillus rhamnosus HN001] # 1 151 1 151 151 291 100 6e-78 MKVIFTQDVRGKGNRGQVKEVPDGYAENFLIRKGLAKAATPQAMSALRGQQRLEEKKEAE KKAEAEAIKAKIEDDKTVVQIQSKAGEDSRLFGSIPSKQIATALDKQYQIKVDKRKIDLK QPIRSLGFTNVMVNLFPGIDARIRVHVIEQK >gi|225002563|gb|ACIZ01000016.1| GENE 2 529 - 2535 854 668 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 [Acholeplasma laidlawii PG-8A] # 48 657 41 655 818 333 32 1e-110 MKKLFERIRMPEFLEDMRMRYAAIAMVVLAVIGILIGALIRPWLALLMLLILISLVATIF YALETIAKNTNQYISDLSYRIKRGEQEALIKMPIGIMIYDEDLNIEWTNPFLQKYFGDTD VLGQPLEKVDAELAELIRSHEDTNETKMVTWGQHQFEIIVQKSIGVVYLMDITRYAEIEE RAEDEKIAIGQIFIDNYDEITQTMDDQVVTNLNSYVTNQLTDWANQFGMFLKRIDNDRFF LLAYAKSLRDVERDKFKILDVIREETSKQNYPLTLSVGIAYGDEDLAQLAVTSQSNLDLA LGRGGDQVVVRAKGHEARFYGGKTNPMEKRTRVRARMVAQALQELFKQTDKVFVVGHKRP DMDAVGAAMGIRRIAQMNGKECYIVIDPDHLHSDVERLMGQVGQDPEVANAIVTPEAALS QATDQSLLILVDHSKPSISAAPDLYKRLAARTVIIDHHRRGEEFPDNPMLVYIEPYASST CELIAEMFEYQPTNVPSLDKLEATAMLAGITVDTKSFSLRTGTRTFDAASYLRSMGADGM LAQNLLKENIDSFIQRNHLIDTIEMIAPNMALCTGEEDKRYDPVIAAQAADTMLSLNGVD ASFVITKRPSGDVGISARSTGDVNVQVIMEAMGGGGHLSNAATQIKGKTIAETRTELLAQ IKKADEDA >gi|225002563|gb|ACIZ01000016.1| GENE 3 2859 - 3794 483 311 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 4 309 5 306 311 190 35 2e-47 MTILKVEHLSKTYKTGKQALVDLNFAVQDGEILGFLGPNGAGKSTTINIISTLLKADSGT IVYFNNPQMPRKEVKQKLGIVPQDIALYEDISAYENVKFFAALYGVHRQEMRKKVENALA KVGLLERQADKPATFSGGMKRRLNIACAIAHEPQLIIFDEPTVGIDPQSRNHILESIKTL RNHGATVIYVTHYMEEVQQICDRVIIMDGGTILLNDQLTAILKKFGDDSYQLTLTGHPTA EDAVILEQMAGINKAVSVGQNSLLLSMANTGSLNQALTFLAEHGLALTDISKQEQNLENV FLNLTGKQLRD >gi|225002563|gb|ACIZ01000016.1| GENE 4 3808 - 4548 529 246 aa, chain + ## HITS:1 COG:CAC3404 KEGG:ns NR:ns ## COG: CAC3404 COG0842 # Protein_GI_number: 15896645 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Clostridium acetobutylicum # 4 244 6 246 247 117 27.0 2e-26 MFTIMRLDCLHLLKNKPIMTYLLLYPPLLIWVTGFVFNSIFGDDVLTSYDYYGVTMMIYL SMATVVILPDMLFGSRVKNANNRIIYTPIARTKVYLSKLLVATGFSYGILAAYMLLFNAI RFVNFGGSQILPLLLLDLAFVIFAITFGGAFCVILRNEDLSTNLLNLVINVFAIVSGLFF PMKIFGKKIAAIADMSPIAKVSDVFFAIIYDHNFQESITTFAILVAGSCVFLIIIHMLYR PEKFEG >gi|225002563|gb|ACIZ01000016.1| GENE 5 4551 - 5507 466 318 aa, chain + ## HITS:1 COG:no KEGG:LC705_00115 NR:ns ## KEGG: LC705_00115 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 318 1 318 318 538 100.0 1e-152 MKLLIFKNNTMRFLKGPAYLFIAALVLIVMTAATAFAVTMKAPKVDVGVSTSASELLQAA PIEKRQLVFTKVTDSSDITENLIMGKYDAYVSKKAGHYTVTSVRSSALKRQLTAYLNNGT YSKVAGSGTHHFKIFLSMLGITVMMLSLILYKFYFDDCAGIDQRIYLSGLSHQSYLLQHI IFNAAILICLSIPITALILPLFGIKLSGTLFATIPLVCIFASTFGIMIATLTRTKQGAMG IGTILVVLSFMLSGALFSIKKATLQARLQYLFPQHYIATLGKYLDGARTLGSALIMLPIF TIICVFTALIAQKKRSIV >gi|225002563|gb|ACIZ01000016.1| GENE 6 5744 - 6385 455 213 aa, chain + ## HITS:1 COG:DRA0142 KEGG:ns NR:ns ## COG: DRA0142 COG1309 # Protein_GI_number: 15807811 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Deinococcus radiodurans # 9 210 11 209 224 65 25.0 9e-11 MKPVKPTKPTLSHAYILQVALGLLDREDLQKFSMRKLGQEMAVSPMAVYRYFPNQEALFD GVVEMLWRSVLTIDPATADEPWQQQIIHLMTRLRQTLLAHPHVLPLISSRPLATRSEFAL VDKILTAWTKKGFKIQSTTVFLINSLTAYTVGFVWTEAVNPQTVDNSESQGQVTPRHPSK TLQTFMQPIENQKFTDDEQFLMGIHAILTGWGK >gi|225002563|gb|ACIZ01000016.1| GENE 7 6721 - 7347 446 208 aa, chain - ## HITS:1 COG:no KEGG:LC705_00113 NR:ns ## KEGG: LC705_00113 # Name: is1 # Def: transposase, IS4 family protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 208 1 208 208 404 100.0 1e-112 MIKQTEKVYFRYRGREMDVKRLYATLKQSKRPTHQHYLYSPIVQYDMDGTKMVMKLVFVT KKGAKGRFLVLATTKTNLRPERIIQMYGRRWQIEGYFKVAKQYLRFDATQVRGYDGLCAH MAMVMMSYDLPALCQREETDERTLGDLFFYYGKALPDIGISQALDWLMTQLIGIASTYHE AQVVINQIMSEFMQKLPKSLADLFGSAA >gi|225002563|gb|ACIZ01000016.1| GENE 8 7482 - 8009 312 175 aa, chain - ## HITS:1 COG:no KEGG:LC705_00112 NR:ns ## KEGG: LC705_00112 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 175 1 175 175 337 100.0 1e-91 MVHLSEALRQANAQKHKGIKIASLFQWIILSIFQRYSLHRAEANPNFSKRTARNCLNDAR INWQRLVLLVAVRLIQYFHQFAAAGRDQAFVIDDSLFKREFSKKTELLSKVFDHDHERYY TGLRALTLGWSDGNTFLPLNFALMASSKTKNQVGLQKPYDGRSLAAKHASKPIAK >gi|225002563|gb|ACIZ01000016.1| GENE 9 8966 - 9154 80 62 aa, chain + ## HITS:1 COG:no KEGG:LC705_00111 NR:ns ## KEGG: LC705_00111 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 62 183 244 244 120 100.0 1e-26 MAFTYKHYLVFFKSIPFSKQPYSIIDLSNESNAKLWGDIKSNKRYYQRLVSDNVRFHVNA SL >gi|225002563|gb|ACIZ01000016.1| GENE 10 9712 - 10635 503 307 aa, chain - ## HITS:1 COG:no KEGG:LC705_00110 NR:ns ## KEGG: LC705_00110 # Name: not_defined # Def: drug/metabolite transporter (DMT) superfamily permease # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 16 307 1 292 292 500 100.0 1e-140 MIIFIGKFFSTLGGPMSKRRVGLLLNLLSVAVMAVTPVMNKWSMNTLSPLAASFYNALVS LGLTFITIGATHTKLIWVKSPVIWVLGLTNCLGIVLQYLSLFFLDPVSVGLIGRFYIVFA ILLSVFLLHERFDRREIVPIGLCIAGTALVSDFSGRMTDMLGLVCAFGYTFSFALTNTLA KKALARVNEKILLLYNQATAVIILGIVAAGSGKLAFSPNVGIGAVAVSAFCSGFLGLLLF YRGLKFISFRDANLIRALNPVFVLVYSLPFFRIQMTPAFILGGGLIVLSIVWMSLPVKKR PAIGKEN >gi|225002563|gb|ACIZ01000016.1| GENE 11 10583 - 10996 313 137 aa, chain - ## HITS:1 COG:no KEGG:LC705_00109 NR:ns ## KEGG: LC705_00109 # Name: not_defined # Def: ADP-ribose pyrophosphatase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 137 1 137 137 270 100.0 9e-72 MVNVYFGPIPQRPDSVLVLQFYHGRLIWVHNVKRKWELTGGKLEPGETVIQAAVRESYEE SGAIVEPSAISSLGYYVLPTGHVTAVVQAEVLRLEAIPMTSETDDRRLLFAPLPDAEQSF HDHIYRQIFQHIGWPHE >gi|225002563|gb|ACIZ01000016.1| GENE 12 11393 - 11542 216 49 aa, chain - ## HITS:1 COG:no KEGG:LGG_00116 NR:ns ## KEGG: LGG_00116 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 49 1 49 125 91 100.0 1e-17 MKKHRFVIALIGLSLFAVSSTVAADMTQANIDQQVVQYTLNGKGLVIFN >gi|225002563|gb|ACIZ01000016.1| GENE 13 11758 - 12816 993 352 aa, chain - ## HITS:1 COG:lin1476 KEGG:ns NR:ns ## COG: lin1476 COG0136 # Protein_GI_number: 16800544 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Listeria innocua # 4 349 5 347 347 422 62.0 1e-118 MSGYHVAVVGATGAVGTRMLKMVAESKLPIASVLALASKRSEGKTVPFRDGTLTVHETTD DAFKGIDIALFSAGGSVSKRFAPAAVKAGAVVVDNTSAFRMEPDIPLVVPEVNPEALRTH HGIIANPNCSTIQMVTALEPIRKAFGLKQVVVSTYQAVSGAGQSAMNELFDETQAALDDK PLEPKILPTASDKKHYPIAFNALPQIDVFEPDGYSHEEWKMIHETKKIMAGDMNSDAIKV TATCVRIPVPIAHSEEVYFEIEDANATADDIRAALNDAPGVVVQDDPSQQLYPQAMNAVG SKEVFVGRIRPDAENSRFFHMWDVSDNLLKGAAWNSMQIAETMDAMGLIQPK >gi|225002563|gb|ACIZ01000016.1| GENE 14 12824 - 13831 728 335 aa, chain - ## HITS:1 COG:lin2126 KEGG:ns NR:ns ## COG: lin2126 COG0253 # Protein_GI_number: 16801192 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Listeria innocua # 2 319 4 318 329 255 45.0 7e-68 MVTLQKVHGSENSFFLLDETQLKQPLSTSQLAAFTKQVTNRQTGWLGGADGVLAITDAPG TAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLASGVP AYSVEISPVSFAAADLPFANLGVDRIVDTVLPAIHPSLKFTAVAVPNPHLIAFVSKEELV SPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMSATTLA FILTHPQEAAFECVNTVYNPGGMVKTMVHHDHGRYWIELIGNATVTATITVPDEALESGK LTQATFQPTGEQAAYEQFIDSLPHRDLADTLIEGA >gi|225002563|gb|ACIZ01000016.1| GENE 15 13834 - 15213 1131 459 aa, chain - ## HITS:1 COG:BS_yclM KEGG:ns NR:ns ## COG: BS_yclM COG0527 # Protein_GI_number: 16077447 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Bacillus subtilis # 1 449 1 448 454 407 45.0 1e-113 MRVVKFGGSSLADGAQFAKVVAIMKANPDRQVIVTSAPGKRHPGDVKVTDLLIKYAQAVL QQGETAAIVAEIVARYQAIATAFNLDAQVMEKIENELYQLPNTSFKNADYLMAGFKARGE KLNAFLMTAVLNHEGIEATYGEPKTLGIVVTDHPNDAEVSRETYDRLAAFRRPLGVLVVP GFYGYTSDGDIATFSRGGSDITGAILANGFHADLYENFTDVDGVAAADPRVVANPQMIQE MTYREMRELSYGGFGVFHDEAILPAIAGQIPINLKNTNHPSAPGTMIVPEQHFVPKHAIT GIVSSQHFGAIYLHRYLLNKEVGFTLKLLQVLARHGISYEHMPSGIDDLTIILDDRQLTE AKRKAICAEIQEVVHPDVLKWIDDYAIIMVVGEGMAQRTGLIQTILQPLASAGVHVSMIN EGASQISLMLGTSRESANRAVKAIYNAFFIPINQRLEVQ >gi|225002563|gb|ACIZ01000016.1| GENE 16 16179 - 17522 1164 447 aa, chain + ## HITS:1 COG:BS_lysA KEGG:ns NR:ns ## COG: BS_lysA COG0019 # Protein_GI_number: 16079395 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Bacillus subtilis # 6 426 10 430 439 485 55.0 1e-137 MNFATNHEGQLTIGGVVASQLVHTFQTPLYVYDVGAIRHQIRAFKQVFETAGVAYAVSYA SKAFATIAMYEVAKAEAIHVDVVSGGELYTAQAAGFPMDKVSFHGNNKSKAELEQALDAG VGTIIVDNFHELDLLDELLKAAVGKQNVLIRVAPGISAHTHAYDQTGQTDSKFGFDLESG QADEAAKRILADDHLNLLGIHAHIGSQIFEVAGFEAVTQKLLAVLDHWHQQFGFIPKVLN VGGGFGIAYTKQDDPLPPEAFVQAIVTTLKTQSHGFNWPLPAVWIEPGRSIVGPAGYSLY TVGSRKDVPGLRPYVAVDGGMGDNIRPALYQAQYTAVVADHPTAQPTERVHLVGKYCESG DILIDDAPLPATHPGDVVAVFDTGAYGYSMASNYNRNPRPAVVFVENGQAQLVVTRETYA DLIQHDQHYTAPSQSAPTSTATTVAKK >gi|225002563|gb|ACIZ01000016.1| GENE 17 17532 - 18236 729 234 aa, chain + ## HITS:1 COG:BS_ykuQ KEGG:ns NR:ns ## COG: BS_ykuQ COG2171 # Protein_GI_number: 16078482 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Bacillus subtilis # 1 234 1 236 236 263 63.0 2e-70 MAQLDTEKIISTIANSKKTTPVKVYLKGKLADLHFPKSVHAFIGKHTGTVIGDWAEIQPV LKTAKLDDYYVEAAGRNTGVPLLDIKTTNARIEPGAIIRDQVLIGDNAVIMMGAIINIGA EIGAGTMIDMGAVLGGRAIVGKHCHIGAGTVLAGVVEPPSAKPVTIGDHVMTGANAVVLE GVTVGEGAVIAAGAVVINDVPAHTVVAGVPAKVIKKVNDQTEAKTVLLDELRKL >gi|225002563|gb|ACIZ01000016.1| GENE 18 18243 - 19394 1021 383 aa, chain + ## HITS:1 COG:L80177 KEGG:ns NR:ns ## COG: L80177 COG1473 # Protein_GI_number: 15672264 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Lactococcus lactis # 6 382 4 379 384 394 52.0 1e-109 MKEAELIAIRRQLHQIPELALQEKETHAFLLKTIQSFPQTFLTIRTLPKLPTAILVKVTG SDPQRTIGYRADMDALPVTEATGLPFASHHLGIAHACGHDMHMTVALGILSYFAVHQPKD HLIFFFQPAEESKNGGKLAYDMGAFTGEWQIDEFYGLHDRPDLPAGTISTRLGTLFAGTT EINVDLIGKSGHAALPQNANDMIVAAASFISQIQTVVARNVGPTDSAVITFGLMRAGTIR NVIAGSAHLEGTLRGFTQKQINFLQQRIRDIGQGIAASFNCEVKVDLNQGGYYPVENNPH LTKDFIDFMQADPAVTFVPTDPVMTGEDFGYLLNKIPGTMFWLGVNDPDSQLHAADFLPD EAALAPGVTAIIHFLTHRMAEAA >gi|225002563|gb|ACIZ01000016.1| GENE 19 19719 - 20624 858 301 aa, chain + ## HITS:1 COG:lin1474 KEGG:ns NR:ns ## COG: lin1474 COG0329 # Protein_GI_number: 16800542 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Listeria innocua # 1 287 1 288 293 260 48.0 2e-69 MQRAELITAIVTPFNDRDEIDYDSMQRLVDHLIDQGTDGFVVGATTGEGPTLSHDEKITL YTRFVAMVHGRALVIANSGSNNTRETTDFTHEVGGIAGIDATLVVVPYYNKPDQNGMIAH YTTVAASAQKPIIIYNIPGRTGVDMLPETVATLAQNPMIQGIKQCGSLAALSDIIDRTKH DAFNVWTGEDAQALTIKTLGGMGVISVASHLYAHSIREMYRALDRGDVTTVAALQRQLLP KMAALFHFPSPAPTKAALNALGFKVGSPRLPLLPLTAAQQQELAHLLGVSELSAIEAEVL A >gi|225002563|gb|ACIZ01000016.1| GENE 20 20621 - 21388 608 255 aa, chain + ## HITS:1 COG:L0094 KEGG:ns NR:ns ## COG: L0094 COG0289 # Protein_GI_number: 15673543 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Lactococcus lactis # 2 255 6 258 260 221 44.0 1e-57 MIHVLVAGFRGAMGQKTVKMVQSQKDFALSAVFDPKATAADAQKYGLPADTKVLTSYDQL NPDIADVWVDFTNPTAVAANIEAAIKAGIHPVVGTSGMTQADQNRLIELAQARQLGGLIA PNFGLSAVLLMKFAQEAAAYFPDAEIIEMHHQDKADAPSGTAIATAHKIAAGRTQKPLST IDNDARGQRIDDVPVHAIRLPGYIAHEQVLFGGPGEALTIRQDSFDRQSFMQGVAVAIRK VQAADHLVVGLENFL >gi|225002563|gb|ACIZ01000016.1| GENE 21 21528 - 22118 453 196 aa, chain - ## HITS:1 COG:Cgl0332_1 KEGG:ns NR:ns ## COG: Cgl0332_1 COG1898 # Protein_GI_number: 19551582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Corynebacterium glutamicum # 8 182 7 172 182 103 35.0 2e-22 MTLEVVPFSSASSEIDGLKIIHVKMVTDERGTVRELFRQSQHSQVLVNPNMAWKQVNLTR TKRGAVRGLHGEAMSKLVTVAHGEAFGAYVDTRRDSPTLGSVVTVRLTPGVQVFVPQGVC NGFQAVADDTEYLYFFDNEWEKGMSGVALTPLDPDLGIEWPIAIKPDNLAQISKKDSEAP TLKEVLKQLAETRPKE >gi|225002563|gb|ACIZ01000016.1| GENE 22 22737 - 23618 509 293 aa, chain - ## HITS:1 COG:no KEGG:LC705_00097 NR:ns ## KEGG: LC705_00097 # Name: not_defined # Def: transcriptional regulator xre family # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 293 1 293 293 571 100.0 1e-161 MQNDNVGAYFREIRKRRELGIEQVRGNLHQSTISHFERDHDDITVRNLLQILQPTFTTPE EFCLLINGQDESISSILKNISEYYDQLDIAGLRAFSAAFEQAHPMTAPVRLILLILESCV KELAGEDPLLSAEDCDYVQDYLLQPGKWFSFEYVVFGNLASSLPGEVNLRLWKKMLTSFR EFHLATYDELLVNILYNVAASFLSQDDLSSAAYLLQSLDLSKVDHYVLYVRHHVAFLKLV LSYRLDPQNKQNNENLKVFLLGTRIVDEALFKKNVDALKELNVDVHTILPSET >gi|225002563|gb|ACIZ01000016.1| GENE 23 23888 - 24574 446 228 aa, chain + ## HITS:1 COG:CAC0138 KEGG:ns NR:ns ## COG: CAC0138 COG1131 # Protein_GI_number: 15893433 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Clostridium acetobutylicum # 1 205 3 211 312 124 33.0 1e-28 MLLAIHDLTFRFRGKTIFQHATMHLKQPGVYSLVAPNGYGKTTLLNLLTGLLQPQSGLIQ LLDKPITSQLIFQKVAYLQDNSVLYPYLTGQQHLDFLTAVHRLNPRSVAAIADQLQTTDF LNQRVGKYSLGMKQRLLLVMALVVKPTILLLDEPLNGLDPTSLQLVREVILTLAHQDVAV LISSHNLDELMKVTQHYFFITGQQIHEEVLGPNDSAEARYNALFATSR >gi|225002563|gb|ACIZ01000016.1| GENE 24 24571 - 25485 305 304 aa, chain + ## HITS:1 COG:no KEGG:LC705_00095 NR:ns ## KEGG: LC705_00095 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 304 1 304 304 547 100.0 1e-154 MKQALFVLEWRRLKASFVLSLALGLAVIIAVAFFLMSRVRQHQTYQTLNVQIETKQAALS RVDGNWRYIATHPDETSPDQVAQAKLKVRHARHLARLYTQQEQFLSRHDNRNYLKTSLAV FHQEALLKKLSPDDFSADLIFNRQQAIFFRKLVATHQGYEINGSATLPAIFLTDFSHLIK HWAVLLLMVMILSTTWTLSWVGNQHKWVTLNQPNHRNWLAMNFLVILMTWLVMLFIMLGL GLLISKLWGRPLISGTHSWQNTATDHAQPLKTLLQENIMMSIVHFAILYFTWQLLSMLAA RVRR >gi|225002563|gb|ACIZ01000016.1| GENE 25 25490 - 26731 546 413 aa, chain + ## HITS:1 COG:no KEGG:LC705_00094 NR:ns ## KEGG: LC705_00094 # Name: not_defined # Def: ABC transporter # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 413 1 413 413 735 100.0 0 MFFHYLKFELTKRNQRWWVWLLVAILTGIGVTGNFQQKAAQNEFIQKYRQELIHQGASQA NGPTALKIELQQLNRSPAAYNHWFAAELPVLSGQRPATNNNAGANYRIAVLNGSAKPDYL DAVNRTEHQNELLAQHKLSSYYPQGLLFTDQELQTMPAETAKLVREWFPTFYVRGFDYLQ YLFQQNIPFYLLLIGIIVSGGLFAKELAHQRAHANWLRLQGEGWGTQIAVQFLTIGLTTV EIVLLPLLLTTLVTGCLNGFGSLQFPVINVTYQNTLNSFAEDFTTSGQLIFHSIALLLLL IALVTAFNIVTALIAKNAWITTTIVLLVTASALIMPPIPWLPLSFFNVWKIASGTIAQST ALPEMQLASGIRVIMVWLLGLLAAAAIGSLNFSHHSSFKASSKADAPENERSY >gi|225002563|gb|ACIZ01000016.1| GENE 26 27043 - 27747 363 234 aa, chain + ## HITS:1 COG:no KEGG:LC705_00093 NR:ns ## KEGG: LC705_00093 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 234 1 234 234 374 100.0 1e-102 MKKAVTIFAILLGISLFAPQQAAHAQTQSPQATKVQVTTVHDALKLTFQVKPNTKYSLKD LNNQQLASGKAKKKTVTLKKLHATSTKLVLKTTSRQRTSKKVIAVPSTYPIAHSAMTSKP VAIGRKVAYYGHNKQLLFTIKSTYLPNMPENKTGISLTFHNNHYAIPLRFSPSYFTASAN NQKVAIETPSNLPVINTSEEKTINLILDVPKGKAADGVLVFSNADLTLPINFFF >gi|225002563|gb|ACIZ01000016.1| GENE 27 27756 - 28343 512 195 aa, chain - ## HITS:1 COG:CAC0724 KEGG:ns NR:ns ## COG: CAC0724 COG1309 # Protein_GI_number: 15894011 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 182 8 185 185 99 34.0 3e-21 MARQSKQWLVDALVTLMKDEAIEDISITEIVQTADLSRRTFYRAFKTKDDLIDYLCRQLA DDYFKSLKAATRDQTPISFATTMQNFFTFWWQQKDLVRLLIRQGLFDRLNGVWQQNAVAH YRDFPAPWHPQGTDQEVNYIMAFALGGLTNILRLWLVQAHPESPEEIQRFAQASFAQLAR SLGGGENNEPHEAQG >gi|225002563|gb|ACIZ01000016.1| GENE 28 28519 - 30345 1181 608 aa, chain + ## HITS:1 COG:CAC0020_1 KEGG:ns NR:ns ## COG: CAC0020_1 COG0477 # Protein_GI_number: 15893318 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 1 423 1 423 458 386 48.0 1e-107 MTRLTKVLCFIGLTIAMFMGTLDTTIVNIAIPKIMTELHGSLANTSWVMTIYTLAMSVFM ITASKIADRYGRKKIMLLGLALFGGFSAACMTAPSLPVLITFRFFQGLGGAIITPIVLPM GIEVYGKEKINQVAALVGAVTALAAAGGPPIGGIILQIASWRWIFGINIPLAILAFLLVT VCAKESYDESLAGRIDLPGLLLLTAALGGVTFGLLEGRQYGWTSPLILTSLIGGGVALIV FIMTEKVVRHPLLELNLFREKTLSASSVIYFMTGFALVAPSLILNYFLQDVLGDSPLHAA LIIIPVSLTIMIAMPLATRLLAKVGAIPVTLTGMLVMAASLFLLSLIKTDTATALIVVLL IINGMGFGFASVSLVASVRYLPKNKSGIGSGIVNAARQIGTCLGIAVLVTVLDTNIDTAK TQIHHASDQIVTEKVLSPYVKSVAHQQLAKVFAGSSTPTTHQQQKMKQAVAQAAKVKTNL PKPAAGTDLRRLYDTSSALRHANIKVTTGLTALTKMMQQSHSPLSVSVTKLATGAMTINT NQTIFLNGIKQIAQKQTLQKTFQAITGRKNTQLSRAFSHTYLVGALIVLCLAPVSLWTDR RQPSTTNI >gi|225002563|gb|ACIZ01000016.1| GENE 29 30838 - 30954 97 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKQTKEIKRWPFSLSLFSQQPSRYNNQIWRDRHDQTSY >gi|225002563|gb|ACIZ01000016.1| GENE 30 30935 - 31960 855 341 aa, chain + ## HITS:1 COG:CAC3161 KEGG:ns NR:ns ## COG: CAC3161 COG0547 # Protein_GI_number: 15896409 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Clostridium acetobutylicum # 1 329 1 330 331 297 47.0 2e-80 MIKQAIEKVVNHEDLTFEESQAVLDEIMNGEASEVQTASLLTALTAKRPTIDEIAGAAAS MRRHALAFPETKDVLEIVGTGGDHANTFNISTTSAIVVAATGTPVAKHGNRAASSKSGAA DVLEALGLDINETPAVSYQSLQENNLAFLFAQEYHKLMKYVAPVRKQLGFRTIFNILGPL ANPAHPTRQLLGVYDETLLEPLANVLKKLGVTNALVVHGRDGLDEMTTAAETAVVELSAG QLTQYTVTPEQFGFNRSQRADLVGGTPEENAQITQNILAGKHGPQRDIVLLNAGAALHLA HPELSIQDGIALAAETIDAGKAREELNHLRAFSAKRKDVVA >gi|225002563|gb|ACIZ01000016.1| GENE 31 31957 - 32736 576 259 aa, chain + ## HITS:1 COG:CAC3160 KEGG:ns NR:ns ## COG: CAC3160 COG0134 # Protein_GI_number: 15896408 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Clostridium acetobutylicum # 1 246 1 244 262 182 42.0 6e-46 MILDDLVAATKIRLARHQQRQSLTELKRIVAHQPPTTKSDFLTILKQPGLHVIAEVKKAS PSKGTIVADFPYMAIAQAYEQAGVDAISVLTEPDYFNGHLRYLKTISQQVSVPTLRKDFT IDPYMIYEAKANGASIILLIVAILTDQQLRTFRQLAENLGMQAIVEAYTAEEVTRALQSG AKIIGTNNRNLKNFQVDFTNSLKLRAMVPDSIPVIAESGIQTQQDVEKLAAAGFNAVLIG ETLMRSKHKRELITAFRGI >gi|225002563|gb|ACIZ01000016.1| GENE 32 32740 - 33339 566 199 aa, chain + ## HITS:1 COG:SP1813 KEGG:ns NR:ns ## COG: SP1813 COG0135 # Protein_GI_number: 15901642 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylanthranilate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 193 1 195 199 121 39.0 1e-27 MVKVKICGLMHPEDILAINAAQADFAGFVFASGRHHVTLEQAVALRKLLHPDIQPVGVFV HESVADILAIYQAGAIEIAQLHRTSTPTEIKQLQHAGLQVIQVFERQAIDLTSPADYLMV DSGKGSGQLLNLAAIPHITRPLILAGGLTPENVARAIQVVHPTIVDVSSGVETAGHKDAH KIHQFTQNAKEEIIYENTK >gi|225002563|gb|ACIZ01000016.1| GENE 33 33323 - 34543 1112 406 aa, chain + ## HITS:1 COG:CAC3158 KEGG:ns NR:ns ## COG: CAC3158 COG0133 # Protein_GI_number: 15896406 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Clostridium acetobutylicum # 15 398 3 385 394 465 57.0 1e-131 MKTLNETAQPTNRAGRYGNDFGGQYIPETLMTELEKITAAFNTLKDDPQFKAELNDLLVN YANRPSLLYYAKNMTEDLGGAKIYLKREDLNHTGAHKINNVIGQALLAKHLGKIRLIAET GAGQHGVATATIAALMGMECEIFMGKEDTDRQKLNVYRMTLLGAKVHSVTSGSMVLKDAV NAALQEWASRSDDTFYVLGSAVGPAPFPEMVKHFQSVISIESKQQLQAKAGQLPDMIVAC VGGGSNAIGSFAAYIDEPSVQLVGVEAAGKGVDTARTAATIERGSVGIFHGMKSLFMQNE DGQIDPVYSISAGLDYPGVGPEHAALAEAGRAQYVGITDDETVQAFEYIARQEGIVAAIE SCHAIAYVEKIAPTMAKDQIIICTLSGRGDKDVASIAKYKGVDVDE >gi|225002563|gb|ACIZ01000016.1| GENE 34 34536 - 35345 424 269 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc [Roseobacter sp. AzwK-3b] # 12 257 17 262 263 167 38 1e-40 MSNLAAIFKNHKAFIPFVVADDPDLDTTVKNIVALAHGGADIVELGIPFSDPVADGPVIQ AADLRAFAANVRTKTVFEIVEAARKKTAVPIVFLTYLNIVFKYGYDTFLKRCAELKVSGL VIPDLPYESRAEIVPFAEKYGIDIIPLITPTSGHRIEKIAKSASGFIYVVSSVGITGERD EFFTGLKTLVTEIKRYTDVPTAIGFGIHTPQQAQTMASIADGVIIGSAIVDIVAKEAQNA PAAIEQFTKAIRAAVDTQKQTESVVSRNA >gi|225002563|gb|ACIZ01000016.1| GENE 35 35571 - 35744 171 57 aa, chain - ## HITS:1 COG:no KEGG:LGG_00097 NR:ns ## KEGG: LGG_00097 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 57 1 57 57 79 100.0 5e-14 MTLLRKVIWVFVFVIYGVVLFWASFYSNSAYFLPVIAIPAIFSGIFWLIENVKKNKK >gi|225002563|gb|ACIZ01000016.1| GENE 36 35990 - 36865 241 291 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 37 278 49 314 319 97 27 2e-19 MSLGVFDIGGTTVKHGIWEHQQLSPVNAFPTPVTFDELLRNMAEIIRDAKRPLTGIAISA PGAVDQEKRKILGISAVPYIHQRPIFDELEQHLGLPVTIENDANCAGIAEVELGVGREAQ NIVFVVLGTGVGGALFVNRQLYKGSHLFGGEIGLLKSQSQQIFSQTGTLVKVAQAYSEQV NRTVDGKMLYELSENGDTLAKSALDEMYQTIAKNLYNLQVLFDPEMIVLGGGISRRPTLA AELSGRLFEQLKKEGIEEIMPVVKCCHFHNDANLIGAAMNFQKIFPDQHRS >gi|225002563|gb|ACIZ01000016.1| GENE 37 36978 - 38246 690 422 aa, chain - ## HITS:1 COG:STM3775 KEGG:ns NR:ns ## COG: STM3775 COG2723 # Protein_GI_number: 16767059 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Salmonella typhimurium LT2 # 3 422 4 425 460 470 53.0 1e-132 MKKFPENFLWGAAMSAPQTEGQSLNFGKSATTWDYWFQTAPEKFHQQQGPAITSDVYGQY LKDCQRMQEIGLNSVRTSISWARFLPDGKTVNPQAVAFYRQYFTAMRDHGVEPIINLFHF DMPMWLMARGGWESREAIAAFAFYAQTSFELFGDLVKKWTTFNEPLVHVECGYLHQYHYP AVVDFKRAVQVAYHTLLAHKAAVAKFRNALPSGEIGIILNISPTYPKSEATADMLAARRS DLLNTRSFLDPAVLGTIPDELVALLSENELLPVTKPEDQALIKDHIVDFIGLNYYQPRRV QAPTAPKTPAQMPADFYQPYDWPAKKINPHRGWEIYPKALYDVAMMMKNDYHNMPWYVSE NGMGVANEEAFMADNGEIQDDYRIAFMKEHLNYLHQGIREGSNCFGYHAWTFVDCWSWLN GY >gi|225002563|gb|ACIZ01000016.1| GENE 38 38257 - 39048 528 263 aa, chain - ## HITS:1 COG:SP1331 KEGG:ns NR:ns ## COG: SP1331 COG1737 # Protein_GI_number: 15901185 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 263 3 267 269 99 26.0 7e-21 MPEDIFILIESCRLNFTAVEQVIADYHLSKQPAMTIDKSSAHLAVSKASITRFCKKIGLS NYKELVFLYKLSLNQETTDLSVSSKITAAYHSLATRSDSHYSQAVIDAFCERLHQHRIIH FFGKGFNSYAGADFQFKFSRVGKYVRVITDENSILMSANFANQDELIMVASLRGDDEELL KAMKIAKQRQVPILLITSNRYSQLVTHADVTLIAASLTKEEALGNISPQIPILIQLDMVY ERYIHLYADAVSQWLASEQILHK >gi|225002563|gb|ACIZ01000016.1| GENE 39 39060 - 39869 538 269 aa, chain - ## HITS:1 COG:lin0424 KEGG:ns NR:ns ## COG: lin0424 COG0383 # Protein_GI_number: 16799501 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Listeria innocua # 3 220 624 838 875 122 33.0 6e-28 MRVLIETPNQNAFSYSDTPFGTVKRAVEDPHIDDWQQLGWREEPTAIFPMLTYVNSHDAT TSWTVFSKGIKEYQFIGEKFQTIALTLFRSVGYLGRPDLLRRPGVASGNEFKAIPTPDSQ LQKKMRFKFALQLDHDFQPASLAKDYLDYAISNPHYQIQDLNRFTTTLKYFVSNPLDHQV PTPKGMTLDSETLVFSSLRKSNDEPGFDIRVYNPDLNREVDGGSIKGLRNVRYTFVDLRG HAVAETQEDDTILLGTFKPGEIKTVHIVE >gi|225002563|gb|ACIZ01000016.1| GENE 40 40008 - 41681 932 557 aa, chain - ## HITS:1 COG:ybgG KEGG:ns NR:ns ## COG: ybgG COG0383 # Protein_GI_number: 16128707 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Escherichia coli K12 # 4 524 6 536 877 346 36.0 8e-95 MKRKVHVIHHTHWDFEWYFTANESLVQLAYHLDEVMQALEQQQISYYLLDGQMSILDDYL TSFPEQKERLMKLVKSGKLAIGPWYTQTDELIVRGESIVRNLNLGMTLAESLGGCMNVGY LPDSFGQSKDMPKIYNGVGIQQAVFWRGVPDDVTTQREFYWQAEDGSQVLTANIKDGYFV GVGLIYSDDAPALVKTIAAGATGADLLLPVGGDQRYIDFNLRDRMNLYRQVLPDTELEES NYPGFFEAIKENELPTITGEFISSAVSKIHRSIYSSRYDHKYLNDKVERRMIYQVEPLMV MAEKCGIPYKQGLLDRIWKLLNKNHAHDSAGGCNSDKTNLIITARYVEADQLSYSLVDYL TRKISESRVQVSEGELVIFNTLPWTTKKVIKCEVSTHFAAIALEKDGVTVPVECLQTRKE SNRSIRRKEVADAPANAYFVHELLIEAEVPPLSFVAYQVVEKTRISANKLLAETAAVSIE NEAYQVTFEAGELSLIDRKRKAAYQNFLAFEDSGDEGDTYDYSPPYVDDRYRLNLNGATC HTIRNQLMEKLIMTGEW >gi|225002563|gb|ACIZ01000016.1| GENE 41 41689 - 42147 300 152 aa, chain - ## HITS:1 COG:SP1619 KEGG:ns NR:ns ## COG: SP1619 COG1762 # Protein_GI_number: 15901456 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Streptococcus pneumoniae TIGR4 # 3 123 4 126 149 93 43.0 1e-19 MNKEVFNRHHILFDETATTQEEAFKSLAQFAYNAGFVSDETAYFEGLKAREKEATTGFKD HIAIPHCKSSVNKKPGLFLIKFKQAIPWQALDQKPVKVAFGLTIPEQGATEHLKLLSLIA RKLIDPDFREGVLTQDDPEKLTAIIDQIEFRG >gi|225002563|gb|ACIZ01000016.1| GENE 42 42190 - 43683 1400 497 aa, chain - ## HITS:1 COG:VC1826_3 KEGG:ns NR:ns ## COG: VC1826_3 COG1299 # Protein_GI_number: 15641828 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Vibrio cholerae # 123 478 7 341 359 196 36.0 1e-49 MEKKIVAVTACAAGIAHTYMAAESLEQAAKKMGYEIKVETNGAIGAENVLTKQDIEQADM VIVASDIKIDPIRFTGKRLFVTKSNQAIEDSEALINQAFEEAKIFGKKGAKVGKIQVGND KDKVNFFTHIMSGISYMVPMVIAAGLLLTIANLYAFQRDDLGRIVKWGFDNKTQMGFLMA KLFYVGQIGFKLMIPLFAGFVANSIADKPAIAPAMIGAYLVNDPEFLNTKAGGGFIGAII VAFIVGYMVKGLKKVKWPKLLVPIVPIMIIPFIATAVIMLIVLYVIGNPIAVGMDAMYKG LTDLNNNYSGAPILIGAICGAMIGFDLGGPINKTALVFGTAIFTDTLTKYGINGANFVPG TATQAAISVAPLGVWLATILFKKKFTKDEKIAASAAFGMGIVGVTEGAIPFVAADPVRMI FSNVVGSAVAGGLVAATGCKFYGGIGSPLGTFIGYIEQPLPFITWILCVCAGILTAALLI GFTRKQTVAGLAVEPEK >gi|225002563|gb|ACIZ01000016.1| GENE 43 44101 - 44829 418 242 aa, chain + ## HITS:1 COG:FN0640 KEGG:ns NR:ns ## COG: FN0640 COG1266 # Protein_GI_number: 19703975 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Fusobacterium nucleatum # 29 234 87 290 293 100 34.0 2e-21 MSLNLLFLYAEAIGIIGMAIYYRSDRTLLPFSRQNAVRDYALGLLFGLLMFSLIWGIIAL LGGYHVLATFQWPNLLWLVLFFFGYAIQSMFEELLCRGYIMGYWLKQNRVGLAVLLNAIF FTLLHLANPGYNFSAATGLFFFAIAMSQFRLLTGNIWLCGAFHAIWNFAEGPIFGTTVSG LSGEKFVLESLPTTTSQSLTGSVFGLEASAASNIVHILLVVLLGIILIFWQKRRTHPVLS AN >gi|225002563|gb|ACIZ01000016.1| GENE 44 44908 - 45171 188 87 aa, chain + ## HITS:1 COG:no KEGG:LC705_00075 NR:ns ## KEGG: LC705_00075 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 87 1 87 87 126 100.0 2e-28 MLLHIASIIFGIATSAFFLYFLVKKPSNLKAVRSFLYLYVTTGGLLAIFAWYFLPSSQKY FSAFTLGLMIAVGAYYFGMKKHMTSHD >gi|225002563|gb|ACIZ01000016.1| GENE 45 45250 - 45909 713 219 aa, chain - ## HITS:1 COG:L0239 KEGG:ns NR:ns ## COG: L0239 COG0664 # Protein_GI_number: 15673985 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Lactococcus lactis # 3 216 6 219 222 174 41.0 1e-43 MAHSCTAVVPLFKNLTDEARTAIDALTHEHQVQKGTVLISPNTAAHLLVVAQGKLKTYQL ATNGKEQLLRVDGLGDYEGEAGLLNIANPNVYTEALTTATVCTISAADFQQLLMQQPQIS LQLLTENARKMQALEKQAGYLGNDSINVRLTHYLLDLRTAAGKDTVTVPMAWTQLADYLG TTPETVSRTLKRLADEKLIQRTGKQVTILNAEDMEDFVW >gi|225002563|gb|ACIZ01000016.1| GENE 46 45962 - 46540 506 192 aa, chain - ## HITS:1 COG:no KEGG:LC705_00073 NR:ns ## KEGG: LC705_00073 # Name: dpsB # Def: DNA-binding ferritin-like protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 192 1 192 192 322 100.0 7e-87 MSITPGMHTIDEETVKARQAAAAKQVDHDHHVPTAGAMSGHVLANLAVLQRKLAQFSQTL SGPSSDGDRELLTQLATQAQQHLTVLVADLAAQGEDFPTTTAEFSEYTMLQEDPAFRFWT NDMKLDAVVNDLDTCQLFVSRAIPLANKENKAVLAADMLQLQRWHEQSILHLQTRLGREV TAGRTLLEEDDD >gi|225002563|gb|ACIZ01000016.1| GENE 47 46877 - 47104 370 75 aa, chain - ## HITS:1 COG:L134080 KEGG:ns NR:ns ## COG: L134080 COG2608 # Protein_GI_number: 15674047 # Func_class: P Inorganic ion transport and metabolism # Function: Copper chaperone # Organism: Lactococcus lactis # 1 74 1 74 75 62 47.0 3e-10 MTKLVYQLDGLTCPSCLQKIEGALGQQAGVKTVKALFNSSKVKAQIDPAVTNADALKKTI TDLGYTVVNVRSQEA >gi|225002563|gb|ACIZ01000016.1| GENE 48 47124 - 48980 1679 618 aa, chain - ## HITS:1 COG:L63697 KEGG:ns NR:ns ## COG: L63697 COG2217 # Protein_GI_number: 15673984 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 25 592 36 609 625 438 42.0 1e-122 MRFIQTHKQEAMVIGGVLTAAGLIFSQAWLLVLASLVAGLPIAVNAWEALRYKQISIELL VTIALVGAVMIGEPIESAVVSFLFLFGDWLEQRSLAKTRSAIQGLAAAAPKTARLLDGTT IPVGKLAVGDQVRVLAGETVPADGQVISGQANIVEAAITGEPDAKRKQVGATVYSGTQVS DGTVDIEVEKTGYNTVYQQIIDLIEDAQDAQSPVATFIQKFARWYTPLVLVIALLVGLIS QNVRLAITILVLGCPGALVIGAPVSNVVGLGFGAKHGILIKGGDVATKLDQIDTVMFDKT GTLTQGKIRVATAKYWTADQQRVAATVTAVEKATAHPLGQALVADLQAKTMQKPTDVKVT RGVGVNARIAGHAISVGNQKVLHQPLTADQQAAVQQIVASGATLVLVTIDDKLVAAYGLR DQLRTETPTMLSTLKASGKKTMVLSGDSQAAVEHMMSALPVSQTRGGLLPADKVKAIKAA QARGEKVMFVGDGINDGPALAQADVGVAMGSGMDVAIDTADVILTNSRLTNLGVLFDLAK RMNRNIKQNLVIAIGTVALLLSGLLIGLVDMASGMLFHEISILLVIANALRLRHTPRKWQ NLTAIKVHHPQTVNNENK >gi|225002563|gb|ACIZ01000016.1| GENE 49 49206 - 50453 1255 415 aa, chain + ## HITS:1 COG:lin1467 KEGG:ns NR:ns ## COG: lin1467 COG1125 # Protein_GI_number: 16800535 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 7 400 1 389 397 484 63.0 1e-136 MPEEQPMVLFKDVEKVYRGGNVAVEHINLEINKGEFVCLIGTSGSGKTTTMRMINRMLEP SGGQILFNGKDIHKIDAVKLRRQIGYVIQNIGLMPHMTIYENITIVPKLLKWPEEKRREK AKELVDLVELPEDYLDRYPSELSGGQQQRIGVIRALAANQDLILMDEPYGALDPITREAL QELIKNLQEKLGKTVVFVTHDMDEALKLATKIVVMDHGHIIQNATPTELLTHPANKFVEN LVGQDRLVQARADVTTVEQIMLKNPAAITPGKSLAEAISLMRKRRVDTLLVTDDEDHLKG FIDLESLETRYQSATSVSDITKSSIFYVKKDALLRDTADRILKRGFKYVPVVDNDQKLVG IVTRASLVDVVYDTIWGDNEDDQDSAAAKNNDQSAASSTTTTSATEDTRDAPKEV >gi|225002563|gb|ACIZ01000016.1| GENE 50 50456 - 51085 751 209 aa, chain + ## HITS:1 COG:lin1466 KEGG:ns NR:ns ## COG: lin1466 COG1174 # Protein_GI_number: 16800534 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Listeria innocua # 1 208 4 211 218 233 63.0 2e-61 MFAFLNAHGSELITKTWEQLYISAIALGLGVIVAVPLGILLTRFPKTAKVVIGLASMLQT VPSLALLALMIPLFGIGKVPAIVALFIYSLLPILRNTYIGMEDVDPVLMDAAKGMGMTAM QSIRQVEVPLAMPVIMAGIRLSAIYVIAWATLASYIGAGGLGDLIFNGLNLFQPDLIIGG TIPVTILALIVDWLLGRLEYHLTPVSERA >gi|225002563|gb|ACIZ01000016.1| GENE 51 51097 - 52026 848 309 aa, chain + ## HITS:1 COG:BS_opuCC KEGG:ns NR:ns ## COG: BS_opuCC COG1732 # Protein_GI_number: 16080434 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Bacillus subtilis # 6 304 5 302 303 356 57.0 4e-98 MKTFRKLLLTLLLIPVLLLGGCGFPGLGGSGNDGTVRIASQTSTESQIMANIIAELINHE LGYKTTLVNNLGSGTVVHQAMIRNDADISATRYTGTDITGTLGMNPVKSPSKAMTIVKRE FKKRYDQTWYPSYGFSDTYAFMVTQEEAKKDNLNNISDLKKVASQYNAGVDSSWMNRKGD GYSDFTKAYGFDFKRVYPMQIGLVYDAVEANRMQTVLGYSTDGRIRSYNLKILKDDKKFF PPYQCSLVVNNSLLKKYPKLKPLLHRLDGKINLKTMQELNYQVDDQLLEPNVVAQKFLAK HNYFKGSDD >gi|225002563|gb|ACIZ01000016.1| GENE 52 52026 - 52688 735 220 aa, chain + ## HITS:1 COG:lin1464 KEGG:ns NR:ns ## COG: lin1464 COG1174 # Protein_GI_number: 16800532 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Listeria innocua # 4 214 1 211 223 244 65.0 6e-65 MANMDTWQQFWYYLANNGSYVLSQFARHFLISIYGVLIAAVIGIPVGLAIARHRTLSNTV IGIANVIQTIPSLAMLSIIMLGLGLGVNTVIVTVFLYSLLPIIKNTYTGMQNVDKNLMDA AKGMGMTRWQSLYMVEIPLSMSVIMAGIRNALVVAIGITAIGAFVGAGGLGDIIVRGTNA TNGGAIILAGALPTALMAIISDLALGFLERRLEPKGKSAS >gi|225002563|gb|ACIZ01000016.1| GENE 53 52966 - 53208 200 80 aa, chain + ## HITS:1 COG:no KEGG:LC705_00066 NR:ns ## KEGG: LC705_00066 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 80 1 80 80 115 100.0 6e-25 MVFTFLAVAAGLLTSSGSAATTVNPTTELNQHVQQVVTSVSTVAPRHLPRLFHEEPASLP EQNLEQKVKTSRPKTTKYSK >gi|225002563|gb|ACIZ01000016.1| GENE 54 53532 - 54374 900 280 aa, chain + ## HITS:1 COG:no KEGG:LC705_00065 NR:ns ## KEGG: LC705_00065 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 280 1 280 280 497 100.0 1e-139 MTYPSLRARIKVEWKSYLVAALFTVIAEYIGTVKLKVGPGMIILFPVFYAIILGMLSGPQ VMRWFDNRHVKAASKLVIVGICPFVVNLGITAGANMDMILHAGPALLVHGFGNLLGIFFG LPLAMLLGLHREAIGATSSLNREYHLALINSAYGSDSDEASGSMAIYIVGGILGTIYFGM MATALGLTGWFDPKALGMSTGVGAGIFMASASASLAQLFPHDANTITAMASAANTIAGIT GIYITMFLAIPLTDKLYNLFDKMFASRRAKTATALKGRIK >gi|225002563|gb|ACIZ01000016.1| GENE 55 54374 - 54820 479 148 aa, chain + ## HITS:1 COG:no KEGG:LC705_00064 NR:ns ## KEGG: LC705_00064 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 148 1 148 148 210 100.0 1e-53 MRLREWLFLLSVCGVGTLLANWIGSGVSIAKSLPGVIILIAITMVAVVLAKIVPFKLPII AYCSILGLLVASPFSPIAAVVISSTKVIAFAAPFTVVGSFAGIAISDKLGTFVHQGWKYI IVGVAVMTGTFVGSLLWDTLTLKLTGVI >gi|225002563|gb|ACIZ01000016.1| GENE 56 54821 - 56152 929 443 aa, chain + ## HITS:1 COG:MJ1541 KEGG:ns NR:ns ## COG: MJ1541 COG0402 # Protein_GI_number: 15669736 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Methanococcus jannaschii # 22 432 14 418 420 174 29.0 4e-43 MTSTLIQDTLTMTAPGEIKPHQDILIRDDKIAQVSDHGTITVQADETIDGTHRLFMPGLI DSHLHTGQQLLRGRVLDTKGIIWQKVMLPFEANMTAETMTLNAQLTALEMITSGTTGFVE SGSYHMAAAGTVYAKSGLRGALAYSTMDDPTLPATINMDAKTAIAHTDALYDQFHGRNHL QVYYSLRALNNCSDTLVDLAAQRAEDRQTFLEAHMNEYPQEVAGILARCGERPYVYLAKR GALSDHFLGAHSLFLDDTEKMLIETHHVKLSHSPFSNAGKGIPATPELLHAGVSIGLGTD GAAHGGLSLWQEMKIFRSVMTLHYGTLQHQPAVMPAPTIMSMVLDGGAAALNLSGHLGRI APGYQADIIGLNIDSPHLWPTGNWNNTLLESVNANDVADSMVAGKWLMRNREVLTLDVER IKAACARRYPTLWQSSSSQLATS >gi|225002563|gb|ACIZ01000016.1| GENE 57 56092 - 56856 656 254 aa, chain + ## HITS:1 COG:no KEGG:LGG_00070 NR:ns ## KEGG: LGG_00070 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 27 254 1 228 228 353 98.0 3e-96 MCAALPNIMAIIIIAIGNILIGGLVGMTGVAGFLLPILYTAGLGYSTTEGLAFSFLAFII SGWLGSRHYQHEGLMDRRVAYLLSGGSFVGAIIGVRLNLLLPTSWVQFLLYLVVLLSGIA ILIQQRHPPKPGVDHLNQPVLLVILGVVTGLICALSGAGGPVLVMPLLVLLGCEPHAAVG IALLNSVFISLPAAVGYLSQVQFMTTLPLLAMIIVTHGIGVIVGSRIGPKIDGRLLKNGT AIFSIILGCIKLWP >gi|225002563|gb|ACIZ01000016.1| GENE 58 57063 - 57665 537 200 aa, chain + ## HITS:1 COG:BS_yrhI KEGG:ns NR:ns ## COG: BS_yrhI COG1309 # Protein_GI_number: 16079771 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 10 192 12 187 194 65 25.0 4e-11 MTAIPLPSPIIAQAVKLFAERGYAETNLPSIAKAAKVAVGTIYRHFKSKEDILNTAFTDI MNFFHDSLATAANCQPDDPETTFSRLFDAATASMEQYPTELHFIQQNVFNEALNAESRAA RGRVIILINNMLLEGQERGVIVKADVRTQLAILYGSIVSMIDIVWAQQQLEGHVSNQKPL AADLKNQVWNGLTSERRVFN >gi|225002563|gb|ACIZ01000016.1| GENE 59 57662 - 60910 2418 1082 aa, chain + ## HITS:1 COG:lin1189 KEGG:ns NR:ns ## COG: lin1189 COG2409 # Protein_GI_number: 16800258 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Listeria innocua # 12 1040 12 1045 1066 533 30.0 1e-151 MKKLHDRHIPSLIFWLVVILVALLTMPDVSGIVRDKGALSLPKSEESQIAATIEKKANHN QKVRSFALVFSNGDDKLSTTQKRAINQTLAKLKDSKAVKIINVTKSSDNAETKKQLDAKD GTTQMALVDVKAKGQVGPQTRDLERQIKTSHVKTYVTGSDVLNDDFASVTEKGIQKTEII AAIFIFIVLIIVFRSPIVPLVSLLTVAISFLTSLNIIMTLADKVNFPISNFTQVFLVVVL FGIGTDYNILLYDDFKAALSQGIPKTKAARIARRFGGRTILYSGLSVLIGFSVLGLANFK FYRSAVGVAIGVLILLTVLLTLNMFFMATMGEKLFWPSKNLNGHSTSRLWHGLSKLAIAR PLITLGVIGIIAIPFLLNVNQTLNFNNADELPETLQSKVGYRLIQDHYSKGMASPTTIYI QSKQALNTQTTLGTIDDLTNYLQKEKGVKTVASVTQPGGSQIKSLYLNDQLKTITAGLTQ SVKGLKQVQAGLNDANTQIKNANVAGSTQQVQTLANGTTTLSSGASSLNSGISQYTSGVT SLNSGLGQLNDQMPALSSGVNTLSTGSTQLAKGMNTLNSNSTVLANGMSQLSSKSGELTT GMATLNDQLQGVAGIAKDIIAKINGLTSADRLTQPILNEINQFSTDVQKLNDGTAAMGNG LKQLNAGTTALNSGIGTLTNGTQQLNSGINSLNSQVPSLVSGVNQLSSGSAKLAAQNGTL TNGAAQIASGADQVNTGVQTLNTKVKAISQQVTAMQSGLTSADQALGTIADGSTSMKQYL TELQHSYLGKKFYIPNETLKSKTFKPALSTYMSDGNKITKLTVVLKGDPSTDAAAQQIRA IKTDLTAKLKHTPLDDATIAIGGQTSQTADLQDLANGDFERTAAIMIIGIGIALIVVTRS LIQPISIISTLLMAYVTSLGLTKLFSTYVLGRDMLTWNTPFFTFIMLVALGVDYSIFLMV RYRDNALEGGTMTQRITKAASVIGAVVISAAIILSGTFAAMIPSGITTLIQVALAVIIGL ILLVFLLPLVMSSVISMTDRQMKQNNHPEGPGPHADPSPKTPAPTTPKQAAKPNRSGMHS RA >gi|225002563|gb|ACIZ01000016.1| GENE 60 61103 - 61477 292 124 aa, chain - ## HITS:1 COG:no KEGG:LC705_00059 NR:ns ## KEGG: LC705_00059 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 124 1 124 124 229 100.0 2e-59 MTEKERFRKFVRNGFRKDEELGIPYHLYCLAHAVLIAVPLGFIVSAVFYAMDLRDLYGTV YAFNMGVIVFLMFELDIDWRIEKNEFLPERVSKLQWVIRILASVLVSGLFFYFHETTVIQ QFVK >gi|225002563|gb|ACIZ01000016.1| GENE 61 61707 - 62393 415 228 aa, chain - ## HITS:1 COG:CAC3433 KEGG:ns NR:ns ## COG: CAC3433 COG1309 # Protein_GI_number: 15896674 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 50 226 7 185 185 72 30.0 8e-13 MFPSINALSLVAYIKKKKYQNGQECYFNLKVGPKKVTLKKKVILMSKFQETDQTIQQAFF KVLAAEPFETITINKICSAAKISRTTFYRHYMDKYALLSKVNHAFSSALAAYLQRRIHQT NIADTLVLIAKYLSTNAKPISDLLRVHTPESDLSASFQKIFHAKFARYIDYELSKGAVTA FPVAYLIELYVAIAMVFLSYSLKKGLDVAVVQSLNDFQKQIFTEKSEN >gi|225002563|gb|ACIZ01000016.1| GENE 62 62425 - 63594 516 389 aa, chain + ## HITS:1 COG:RSc0439 KEGG:ns NR:ns ## COG: RSc0439 COG0657 # Protein_GI_number: 17545158 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Ralstonia solanacearum # 157 377 77 293 317 145 39.0 1e-34 MSKKKTICFYAMTAILFALIFIVAVFLRVKTFEYIILLILIAGLIYLKQSQRIVRLWQIS LISIGLFFIACLTTALTRPNLKVSLSGNLINNAFQMINRHYESQHGESFIIKKMETPSNY HFQDWQPPKTYRNQEVHLKHARAYLLSKKQPDASKKVVYQIHGGGYLSGFSNTYNQAALR YSQSDHHATVFSLDYRTAPKYRFPAALNDAIDGYRWLLQHGYQPQNIIIAGDSSGAGLSL ALTLYLRDHKLALPRALVLASPWTDLTASGSSYHTKVTSDPLFGSSTIKTAPKYPVPITY AGSHNLKDPYLSPAFGNFKGLPPMLIQTGSHELLLSDSTTVVKKARAAHVQVKFVEFSGM YHIFYISTPQIPEAQRAWQNITSFIAKHS >gi|225002563|gb|ACIZ01000016.1| GENE 63 63916 - 65286 1041 456 aa, chain + ## HITS:1 COG:L180636 KEGG:ns NR:ns ## COG: L180636 COG0477 # Protein_GI_number: 15673521 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 3 447 11 446 457 265 39.0 2e-70 MTNSPVSHRTQLAILSAGLLTFVGILVETSMNVTFPTLIKTLHVSLSTVQWLTSGYLLMV TLVMSTTAFLLRRFNTRLLFRAAICCALAGTLLCIWAPNFPILFAGRLLQALATGVSTPL MFHLILTTIPQAHLGIYVGMASVVTSLAPALGPTYGGLLTYYASWRMIFWLVMPIILLVW FMGEATIRVKAHSTSDRFDFLGFLLLALGLFSLIEVLDQFTAAGVTGAFWAYVIALIIAI IGMGRHLKHTHSPLLNFSLFKNAGIRARAINFFILQFSNIGIAFVIPIFAENVLHTNASV AGLLLLPGSLIGAAVSPIGGALYDRFGARRLLLTSNAAMFVGAVLLGSFTHQLNIPLIVG FYIIFRAGFNLGFGNTMSDASTMVSGSAKADINALFNTLQQYAGSLGTASLSAIITFQNR LSPSGADATGSQIDFMLLAVLAVLTFMVQWRLHASK >gi|225002563|gb|ACIZ01000016.1| GENE 64 65505 - 65921 394 138 aa, chain - ## HITS:1 COG:no KEGG:LC705_00055 NR:ns ## KEGG: LC705_00055 # Name: not_defined # Def: FMN-binding protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 18 138 1 121 121 248 100.0 6e-65 MSSVRIRIKNEKKEDQTMNEKFLEVLKHEGPVTIVTINGNPAHVVNTWMSYVSRKDDELY IPAAGMHSIEGDFAKDNHVLLTFGSKEVEGTVGPGAGFHVFGTGRFVDQGPAFAAKKEKF PWLTRLLIVHVDEVQQKI >gi|225002563|gb|ACIZ01000016.1| GENE 65 66049 - 66378 331 109 aa, chain - ## HITS:1 COG:no KEGG:LC705_00054 NR:ns ## KEGG: LC705_00054 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 109 1 109 109 221 100.0 7e-57 MKALYKGEPADIWEIGKTTPQPDWVREAFEANYLYWLDNHLRILMSGLKPSLDTNLKIGA VGTIGGGFAGYGMYVMGYPGDYLDITNHRVVSKKKFLKQYQLIDDTRVS >gi|225002563|gb|ACIZ01000016.1| GENE 66 66702 - 69221 2230 839 aa, chain - ## HITS:1 COG:no KEGG:LC705_00053 NR:ns ## KEGG: LC705_00053 # Name: not_defined # Def: galactosidase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 839 1 839 839 1677 100.0 0 MHTLTIDGSQLQLEQNEANTIKGFGLLSCNNTSRLLMDYKWEHPQVYQQVLQHLFGGQHP LMRMLKVELGSDSNTSCGTEPAPQRAADEPANVARGMGFQLIADAKKIQPDLKTCMLRWA EPGFLRPSWRQVKSDDPDEKVPTEAFEAMYQYYKQTVIAAWQAYGYLFDYIDPDRNETKH PMYRYLKWFANRLKTDQADFPEGFPVADYHAIKLITSDQNYGTDMGTALLNDPELQAVIP AVGYHYNTDDGPDKPFTKIADQLHKEVWYSEGIAPVTFGTLRTQDTTGIGIGGPMSALDV ANRLVKSYARSRRSLYIFQPAIGGLYPGAKYPGKQLLEMDTPWSGYFQQDTVALAVMHHF TDFAVTGWRDQTAAKNWRYVPSATVSEVAGTENLTQAFGAASAMTLVAPDEADYTVVLIN DTSAPQTYQIAVKNLAAATKPLHVWQTWADKAGKIHDREKTTTLTPVNGNVTVTIEPRAI ISATTADFQPQALLPNPDVKPDQPLQQDPENHVLFHDDYTYADMPADYLTRRGGTPKYTT DMDGAFEVVEQDGKRGLQQKITEQSRALAWETQTDPNFTVGDIRWLNYAAALKFTFDTTT RQNTVSANYIGLGVRSVDDFEGSLFSAPYVATLTIGGKLRFYVRGVLAATLDVPVFDAKV SHELIVEATDRHVTVQVDGQTYVTYDDPSDQPGLAGQVKVGTGYFKTVIQALTVTSTSAP AVLGHRRDDLDASLTFSNDQWERLAARFPHAWERSQSIGEKGATVDFDVEGTGFVLFGMQ AHASRLQLAVDGRIQEVVPLTALAKQPNTVVTDLAAGPHHVKVTVIDGSYTFDGVAPIL >gi|225002563|gb|ACIZ01000016.1| GENE 67 69253 - 70272 916 339 aa, chain - ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 3 339 2 339 339 272 41.0 9e-73 MTKVLTFGEMMLRLKPYDHQRILQASGFEANYGGSEANVAVSLALLGDEAQYVTKLPDNA LGDTARNTIRGLGVDTHKILRGGPRLGIYFFEKGASVRNTNVVYDRAGSSFATAEADEFD WASLLKDVAYFYFSGITPAIGKHMQTAIESAVKYCAAHDITVVCDMNYRGKMWSPAEAQA FFAKVMPYITIVLANDEDFEATLGIKAFDGNMATGIDQIDSFKAGMLQVMKQWPNVKTVA SVVRNIHSVEDSWWTGLLAEDGKTYQGPTFHMHVMEGVASGDAFGAGLMHATLHDFDAQA KINYAISASVLKLTISGDLNLITDADVQAVMATGSGVDR >gi|225002563|gb|ACIZ01000016.1| GENE 68 70340 - 71032 651 230 aa, chain - ## HITS:1 COG:L0240 KEGG:ns NR:ns ## COG: L0240 COG1802 # Protein_GI_number: 15673615 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 5 220 7 223 227 171 41.0 1e-42 MQISNYQDEAYNAIKEMILSMQLTPGEKVDKTELSAQLKIGATPIREAIIRLRREGLFNV IPQSGTYVSKINLDEMYQGRFARVNLERTIVADAVDVMTPDQIAKLEQQIALQGVYEHSR DYDHFFDLDHDFHEIFYMADHKQFVWAWVQQMNLQFNRYRYLRLEVSGLKWHNIITEHQA IVDAVKAKDAELASHLVADHLLAIDDDVKAVLSAYPNYFEGKAAPSHQPD >gi|225002563|gb|ACIZ01000016.1| GENE 69 71445 - 72740 1226 431 aa, chain + ## HITS:1 COG:CC2315 KEGG:ns NR:ns ## COG: CC2315 COG0477 # Protein_GI_number: 16126554 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Caulobacter vibrioides # 66 431 47 418 418 120 29.0 4e-27 MANDVKNDPKAVKTTVGVVTNAKIQDSQQPKMPLGVATAMFLAPLCWYGPIGSTRSVLIP QLFSQIDSAHKVWAVGILATVASITGAIANLLFGAFSDVTRTRFGKRKPYIVLGTIAIAL SLVAIANTTSITAIIFIWIIAAAAENAIAAAIYPQISDRVAPKWRGTVSTFYGVGFTIAQ QGFALLAAQFLGNVKFGIYVMASMTVVLAIIHVLLINEKSNLDEPKIKLDKESLKKYFFF PTHDARDFYLALSGKFLMVVGSTIVTTFLLFIFTDYIGQSTKQAGGSISVFSTIMLVIGV FFALVGGPLADKMKRVKGPVVIATFALAVAALFPLFVKEAWAMFAYAVIAAFGNGLYNSV DGALNMDVLPSSDTAGKDLGLINLANTLGQMLGAMVASAIVEGFGYQAVFIFAVAMEIIG GFLIAAIKRVR >gi|225002563|gb|ACIZ01000016.1| GENE 70 72788 - 74365 1252 525 aa, chain + ## HITS:1 COG:CC1757 KEGG:ns NR:ns ## COG: CC1757 COG5520 # Protein_GI_number: 16126001 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: O-Glycosyl hydrolase # Organism: Caulobacter vibrioides # 16 460 29 448 469 186 32.0 1e-46 MTTTEKGLYPTEFWTVTAGDLAQKRDHLATPKPETTPGDAAKIVIDPADRHQEWIGAGAA ITDAAASLIWKQSKEQRSALLHEMFDPEEGHFSTIRIPLGSCEPASQPYYTYDDVPFGEH DASLSKFSVGEGEPGAPDATKDLKYLIPVVQEILAINPAVKIMASPWSAPAWMKSTGELK MGGHLRFGEYTNNGYAIKDTFEGVYAQYFVRYLEEYRKYGIPIYAITIQNEPSNAAAWPA MIWKIPELAHFGYKFLRPALDKTFPDTKIYFWDGSLNVLDVIDKPLSELVTPDEAAAFDG FAFHTYDGPYTNLFKGSRLNPNWKLAMTERRCMIEETPEDASHIMFGLIGNWLVRQGLNM IDLWNIALDERGLPNQVGSTGRRGVVTIDHTTGKVQRNLEYYMLRNFNQDVVPGSIVIGS TNYTQDGYTGGLGSVAFLAPDGAIAAHLYNPSGKPLDAAVTINNDGPVTWQHVTVPAWGT VTLHKAFGPVNESAPRQDEDFKLNPYPANLMDDWAPGKGVNANKK >gi|225002563|gb|ACIZ01000016.1| GENE 71 74566 - 76200 1754 544 aa, chain + ## HITS:1 COG:L0241 KEGG:ns NR:ns ## COG: L0241 COG0246 # Protein_GI_number: 15673614 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Lactococcus lactis # 1 542 1 542 544 710 63.0 0 MVKLTDDYQAKAADFKAAGIAVPQFDQEQMKQTTEANPVWVHFGGGNLFRCFHAKIAQDL LNNGSLKSGVVVAETYDGDVPADIYKPYNDRVLQVVMQPDGTLDKTLIASVAEAIYYNKT NPEGWEHLKEIFTKPSLQLVTMSITEKGYQLTDINGKLTPAAEADIAGKPDDATTNMGAI ARLLLARYEAGAKPIAMVSTDNFSENGKRYENGILTIAKGWAKHGTVTQGFIDYLTDPKQ VSFPWSMIDRITPNPAQNVADKLKAEGFEDTTIVHTPKHTNIAPFGNTEETHYLVIEDSF PNGRPALENAGVILTDRDTVNDADQMKVTACLNPLHTALAIYGNLLGYTSIAAEVENPNL LTLIKYLGYKEDLPVVKDPKIIDPKKFLDQLVTKRLPNKNIPDTPQRIASDTSQKLPIRY GVTIQHYLDKDPESVKQLKAIPLILAGWCRYLMAVDDKGNDFTPSRDPLLDQLQPYVADI KLGSDADVHTALKPILSNAQIFGHDLYQIGLADQVEADFKKLIAGPGAVTKTLEQFRQDH EKEL >gi|225002563|gb|ACIZ01000016.1| GENE 72 76204 - 77289 1194 361 aa, chain + ## HITS:1 COG:L0020 KEGG:ns NR:ns ## COG: L0020 COG1312 # Protein_GI_number: 15673613 # Func_class: G Carbohydrate transport and metabolism # Function: D-mannonate dehydratase # Organism: Lactococcus lactis # 4 357 1 355 358 472 61.0 1e-133 MSDLKMGFRWFGEKDDPITLQQIRQIPGTQQVVGALFDVPVGEVWPKEKIAALKKQVEDA GLKLEVIESVNIHDDIKIGLPSRDKYIENYKETIKNLSEYGIKVICYNFMPIFDWLRTNL HYQLEDGSNVMAFQHQYLKDDPHDIIDSVRNNSEGYVLPGWEPERLAEIERLFKAYADVD AAKLRENMKYFLDAIIPTCEKYDVRMAMHPDDPPRELFGLPRVYKNAEDMRIIESMHESR YNGFTICTGSLGENPNNDVPAIIREFVKKDRAPFIHARNIEFINKEGDFHESDHLSKDGS LDMYEIMKALHDLDYDGYIRPDHGRNIWGENGRPGYGLYDRALGITYLNGLWEALEKGSA K >gi|225002563|gb|ACIZ01000016.1| GENE 73 77289 - 78722 1167 477 aa, chain + ## HITS:1 COG:L0019 KEGG:ns NR:ns ## COG: L0019 COG1904 # Protein_GI_number: 15673610 # Func_class: G Carbohydrate transport and metabolism # Function: Glucuronate isomerase # Organism: Lactococcus lactis # 1 476 1 469 472 580 56.0 1e-165 MAFLDDDFLLTNEPAKQLFHQYAADLPIIDFHCHLNPQEIYENRNFKNITRIWLNEGTYG DHYKWRLERANGVPEELITGDGDDYEKFVAWCKTMENAWGNPVFEWTHLELRRFFGSDLV LSRDTAKKVWDLTNAKLATPEFTPRALIRRSHVEVVCTTDDPASDLHYHELIANDEDTNG FKVLPAMRPDKLMAICANTYGDYLQTLGKAAGVEITDFASLKKAMKQRFTFFAEHGGHLS DHGLNSFHYRPVDQEALDTIIKKGIENRPVSDVENDQYLTGLVEMLMDLNREFNWTMQFH ANVDRSLSLPNLKKIGPDTGFDAMGSQPDLVGEFRDLFQAMDARGPLPKVIFYSLNPNDW LPLITMLQSFVGQGDKQHLQLGAAWWFNDTAEGMHRQLQTFAQQSLLPNFVGMLTDSRSF LSYPRHEYFRRVLCNFYGELVEQGRVPYDLDALGRIVKNISYGNAHDYFGFYDNNND >gi|225002563|gb|ACIZ01000016.1| GENE 74 78747 - 79718 794 323 aa, chain + ## HITS:1 COG:CAC0395 KEGG:ns NR:ns ## COG: CAC0395 COG0524 # Protein_GI_number: 15893686 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Clostridium acetobutylicum # 1 313 1 313 315 327 52.0 2e-89 MNECLTIGEPLVVFAAEEADVPLAAAKHFTKYLAGAELNVAVGLSRLGHSVEYITHLGED PNGIFIRQQLTAAGIGSDNVTTTSRYPTGIEFKARVTHGDPNTYYLRAGSAAAHFDPAAI DRIDLAGVKLAHITGIFPAASASTLAATKRLMKRLISNRILITFDPNLRPALWPDQNTMV TTINSLAKSASIVLPGAAEGKILVGSDDPETIAHFYLNQSEQTQLVIVKVGKQGAYLLGR DVPGQLLPSFPAEHIVDTVGAGDGFALGVISALLEGRSPAEAASRGNAIGALAIQSPGDN TGYPTRQQLDKFMQTSLNKTERA >gi|225002563|gb|ACIZ01000016.1| GENE 75 79632 - 79793 65 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVVFFSLDVFCSEENQMGCLKELSVSRALSFIKTGLHELVKLLSRWVTGVVAG >gi|225002563|gb|ACIZ01000016.1| GENE 76 79792 - 80442 665 216 aa, chain + ## HITS:1 COG:L0022 KEGG:ns NR:ns ## COG: L0022 COG0800 # Protein_GI_number: 15673608 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Lactococcus lactis # 1 213 1 212 213 223 54.0 3e-58 MQKYDYLNRLINTGCVAVVRGDDADEAVKTVDAVIAGGVTGIELTFTVPHADKALDELSE KYGDREDVLIGAGTVLDPATARLAIIAGAKFIVSPSFNADVAKICNLYSIPYTPGCFTPT EIQTALEAGVDLVKVFPGSVAGPAMVKALHGPFPQLAIMPTGGVSLDNLETWFDAGVTLV GAGSNLTAAAKTGDYAGVTATAKKYRAKLDAIRAGK >gi|225002563|gb|ACIZ01000016.1| GENE 77 80772 - 85250 3549 1492 aa, chain - ## HITS:1 COG:no KEGG:LC705_00043 NR:ns ## KEGG: LC705_00043 # Name: galC # Def: family 59 glycoside hydrolase/fibronectin type III domain-containing protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 1492 1 1492 1492 2464 100.0 0 MKAKLIGSRPKSSRYTLLWSGIVMAMMAVSLVMLLTIPAATRAASQNPEDTVAVHLDGND IASNNTNGLTFKGFGVLSGNGTSALLMDYKSEQPDVYAKMMKTLFGGSQPIMTNLKLEMG NDRNNSTGSEPATQRTESEAANVTRDQGFQLVADAKKINPNLKVTILRWNAPGWAKTNDQ IYTWYKNSILNAYRTYGYMVDYVNPGLNEHKPDLAWAKEYAKRVKTDNTGFKNDTERQLY NKIKVVISDEVGVGSFGKDMVTDSSLRNAVTAAGYHYSTEDDSAKNFTALADKYDKEVWN SEAQATFGNSDYRPNSGTGIGGAGSSLEMANTIVKGFTDSRRTNFIYQPAIAAFYEGGQY SSKSVLQATDPWSGWTNSDVAIDVLAQFSKFAKLGWENSDNTSGIWRAVSQASVSTATGS NNVNGRNGLANYLTLASPDKKDFSTVIVNDSKYTKHYQISASNMAYKGTPTLEEWETRAA DTTAKDAYDSNYLKHVGDVQADSKGVYTVTVKPFSIKTVTTLDKAKDSDLNQGISASSNK QRTVLDTDANGKGTDTSDTTLYADNFEYGGKKVATLNADGTSNTAKTEDFITSRGGDEGF YPLYTFNRNGTLEGYKTTNAKSGHYVLRQQLDSTVVEPGGAWNDGDALAWIGDNRWMNYK ASTDVSFEDKGTHGSANYASIGARQQADSGPAAYLKFWQDGGWSLHIGSQSVASGNVATG QGGTKISGFDTTNTAWHNIAIQAAGNTITASIDGQKVADGKVTSELSGRVTLGSGYFHTD FDNLKVETVKGYTPYYSQQIDDLEMYDTSATPKQQLVYNDHWTHETGQGMYLRDRTVSKN TGAGATLTYTFTGTGLDICGNNDGSAKLDVTVDGKQVATDAATNKADNLGQTYTLRNLKY GQHTVTFTVKSGTLAVDYVGVVPSDTIADFSKLQTAYDKVKDVTNADNKYTSSSWTSFQK VLLAAKNVLADTTASQNDIDTALKNLNTAYAALALNPDKTKLQTAYDKAKAVTNPSDKYT DASWKVFQTALTDAQDVLANANATQNDVDSALKNLNQAASDLVLNPAKPDKTKLQAAYDK NKAVTNPDDKYTSESWQALQTALSDAQKVLTDTNATQNDVDSALKSLNQAATDLTLNPAK PGKTKLQAAYDKNKTVTNPDDKYTSESWQAFQKALSDAQKVLADTNATQDSLDTTLQKLN NAYAGLKLNSQKPDKSALQTAYDKDSTVTNQANKYTTASWTTFQSALANAKKVLADTDAV QADVDTALQKLNNAYDGLTLSPDKSALQTVLTEAQTLSHSAVTGDHEGNYPADALKTLQV AIDTAKKVADNPDASKDDIDTAASTLKQAVTAFKQTVVTVNRDQLTQLVTESQTLRADDY TQNSWTPYQQAVAAAQKLLAGKPSQQELDAAATALKKAKTSLVAAPTGKLPSTGDASSES ASSSEETASSSTAKYPSTGESQLSLAVTMAAVVFLIGISGFAWFLHQKGKAK >gi|225002563|gb|ACIZ01000016.1| GENE 78 85685 - 87496 1708 603 aa, chain - ## HITS:1 COG:uidA KEGG:ns NR:ns ## COG: uidA COG3250 # Protein_GI_number: 16129575 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli K12 # 5 603 1 598 603 491 44.0 1e-138 METSLLYPVTNDQRTDQKLDGLWQFKFDEAGEGEKSGWETGFHDGVSMPVPASFNDFFTD KASREYTGDFWYSRNFFVPSAAKGKALFLRFDAVTHRATIFVNGKEIRTHEGGFLPFAAD ISEAVKYGAENTVVVKGNNELSREALPAGDTITLRNGKKMVRPFFDFYNYSGLNRSVHLL SLPQERVLDYTTTFALAGNDATVNYTVETNGDAPVTVSLADADGQVVATAQGKQGALQVQ NAHLWQVRNAYLYTLTIQLGDDTQTPLDTYTDRIGIRTIKISGTDILVNDKPIYLKGFGR HEDSPFAGRAFDLNVEKKDFALMKWIGANSFRTSHYPYDEQVYKIADEEGFLLTDEVPAV GFKMAAAAFLGGLNQSFFKGPWLKKLHERHIDQIRDLIKRDKNHPSVLAWSLFNEPDTID ENAVPYFKQIFDESKDLDPQGRPRTFTLSEDDTIETSKVLDFPDFYMLNRYPGWYHFGGY QISDGEAGLRDEMDKWQKAGVKKPVVFTEFGADTEAGLHKLPSVMWTEEYQVEVLKMFSR VFDDYDFIKGEQVWNLADFQTVEGNMRVNGNKKGIFTRDRQPKAAAFFYHDRWNKLPLDY KAK >gi|225002563|gb|ACIZ01000016.1| GENE 79 87746 - 88075 229 109 aa, chain - ## HITS:1 COG:lin1481 KEGG:ns NR:ns ## COG: lin1481 COG4392 # Protein_GI_number: 16800549 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 6 106 7 107 108 76 43.0 1e-14 MQNPETFVAILSCGLATWLLRVVPIVLVKRMTIPKWLLHFLSFVPVAILSAIFVESLLVI HPGQWPGVNWSNLLASLPAIVVAIITKSLFAVVVAGVAAMAILRLLGWA >gi|225002563|gb|ACIZ01000016.1| GENE 80 88062 - 88772 763 236 aa, chain - ## HITS:1 COG:L54719 KEGG:ns NR:ns ## COG: L54719 COG1296 # Protein_GI_number: 15673595 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Lactococcus lactis # 1 232 1 232 235 215 52.0 6e-56 MNDELTIRSGIRDVMPTVFGYITVGMAYGIVAKTGHLSLLMIGLMSLIVYAGSAQFVLVS MLATGSPIGAMVISTALINARMSLMSMTVAPYLKDESMTQNVLIGTLLTDESFALSMNKL NYTGHHLNAPWFHTVNVGAYLVWFIASLLGAVIGGLIPNPDNFGLDFAVVAMFIGLLYLQ MITDRSKPFLRHLSVAGVVAVAMVVLVRYLPGTTAIIVATVIGCLFGMGVERHAES >gi|225002563|gb|ACIZ01000016.1| GENE 81 89116 - 91443 1653 775 aa, chain + ## HITS:1 COG:BS_ybfG KEGG:ns NR:ns ## COG: BS_ybfG COG3409 # Protein_GI_number: 16077289 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative peptidoglycan-binding domain-containing protein # Organism: Bacillus subtilis # 1 493 1 506 732 413 46.0 1e-115 MADEAVLAVQNWLNKTYTGIPGFEPAPTDGHTGWATIYALREALQHELGISSIGEGFGTA TRTALSGVVDQLKPGYKGNIAQLIQGAFWCKGINPGTELNQNFSAETEQAFKSLQQDAGL TADGTVTVNLMAALFDMSAFVLVSGGDANVRQLQQWLNAEYSTYLGIMPCDGIYQRDTNV GLIYALQRAVGISADVANGNFGDATNAALKNVQLSVGSTGLLVKIVKYGLYLNSMYSGDF SESFGSDVATSIIRFRKFMKYPNETSGIADYTVIKGLVTSNGDTGRDSIALDTATQLTAE DVKHFRDYGFSIVGRYLTGTVGTDFKPKNLTPTEIKTILDGGMKFFPIYEDGGYVETYFT ASQGRKDAQIAVAAALELGLPSGTVVYFAVDVDFQEGDIEGTVIPYITAVQNALEGSIYK TGIYGTRNVCLHAEEHGIQYSFVANMSYGWSGNLGFKMPSNWAFDQFVEYPIYGVSIDQD ASSGKDQGVSHVSSSVKEVNTEFFNYLKKVQDDADAFVKNMDKNGNTVPDSLMAARLICQ LYRQFRYASLPWTIMTGALNDTWIYNENKKWNITSDDDFPELTDTATGIKTDFIHMIAAL ASLLNFNAAVSATGTQDLAGWAGDLLTGISDSIKSADKYANLLVAMEDHIGKDASKGKSS FGVGDLLADADAVNIYASLKNGNASLYSIIDRYYNNKGNTERFNQYVSNRFSGNHDKIES DALRVLNPDGELAQTAEFGNALNAFKDKFEVSYSPDQATMAASVFKNMIQGHLEH >gi|225002563|gb|ACIZ01000016.1| GENE 82 91496 - 92029 195 177 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551061|ref|ZP_04439786.1| ## NR: gi|229551061|ref|ZP_04439786.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 177 1 177 177 332 100.0 8e-90 MVYWRHLYAMSIVLVLFFLSLAFANWTMFQTILGLSMFSLFLALTLWEIRLNSKQVKRPR LQVILTYICIYVSLFLFNMSVHQTSLSTFGQTNVIQFWNEHDTIVHLEGKTYHLIWSKST FPRTVYFYNLYGRKGLFFQRLNDEVIYYSPSISRGVDRGAVGTFLRGIKGEKDQIGD >gi|225002563|gb|ACIZ01000016.1| GENE 83 92517 - 92990 328 157 aa, chain - ## HITS:1 COG:no KEGG:LCABL_00440 NR:ns ## KEGG: LCABL_00440 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 157 1 157 157 187 68.0 1e-46 MNVYIPFIEMVCIWVGASTIISILRGKQKNKLLQEGKYTNESYSEARKKMQELTTKASNQ LFNRAYNIIIVWYFFIVVFSLGAITANFSIAPVIYLIDAIFFFAFAVINLGASYYTQKVR RKINTELPEIKCAVKILLFIFRDFGTALVFLVSYLQA >gi|225002563|gb|ACIZ01000016.1| GENE 84 93474 - 94007 281 177 aa, chain - ## HITS:1 COG:no KEGG:LC705_00037 NR:ns ## KEGG: LC705_00037 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 177 1 177 177 302 100.0 4e-81 MDYIYIVPHVLVMLVFSITLRIKNEMFKKERIERIAAFKRIDSDGSVGMEKDGDESLNTL VGRNLYIERMMNSQMIGSYLAVIFFSAGVIYGNTSTGLLLLPSIGVFLLFANVIFLGEEQ VFRVIKQRKLERLSERYPSLMCVRKVGSKWYYRYLLLLVVVGGLNFAIFYAAAVVFY Prediction of potential genes in microbial genomes Time: Wed May 25 19:27:15 2011 Seq name: gi|225002562|gb|ACIZ01000017.1| Lactobacillus rhamnosus LMS2-1 contig00020, whole genome shotgun sequence Length of sequence - 40220 bp Number of predicted genes - 44, with homology - 41 Number of transcription units - 26, operones - 11 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 26 - 655 485 ## LC705_00036 membrane protein - Prom 723 - 782 4.8 - Term 726 - 779 7.6 2 2 Op 1 . - CDS 810 - 2252 1286 ## COG4690 Dipeptidase 3 2 Op 2 . - CDS 2203 - 2475 101 ## gi|199599498|ref|ZP_03212888.1| hypothetical protein LRH_09253 - Prom 2572 - 2631 4.2 + Prom 2303 - 2362 3.5 4 3 Tu 1 . + CDS 2530 - 2868 194 ## LC705_00034 hypothetical protein 5 4 Tu 1 . - CDS 2875 - 3477 515 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 3541 - 3600 3.8 6 5 Tu 1 . - CDS 3730 - 4329 401 ## COG3548 Predicted integral membrane protein - Prom 4349 - 4408 2.8 + Prom 4198 - 4257 2.8 7 6 Tu 1 . + CDS 4499 - 5272 782 ## COG0730 Predicted permeases + Term 5364 - 5415 1.1 8 7 Op 1 . - CDS 5448 - 5768 167 ## LGG_00036 hypothetical protein 9 7 Op 2 . - CDS 5777 - 6583 775 ## COG0561 Predicted hydrolases of the HAD superfamily 10 7 Op 3 . - CDS 6629 - 7141 515 ## COG1309 Transcriptional regulator - Prom 7257 - 7316 4.7 11 8 Op 1 36/0.000 + CDS 7353 - 8054 316 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 12 8 Op 2 . + CDS 8064 - 10637 2025 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 10654 - 10686 5.4 + Prom 10752 - 10811 3.9 13 9 Tu 1 . + CDS 10840 - 12090 1083 ## COG3942 Surface antigen + Term 12165 - 12222 13.1 - Term 12152 - 12209 12.2 14 10 Op 1 . - CDS 12308 - 13417 802 ## COG0492 Thioredoxin reductase 15 10 Op 2 . - CDS 13435 - 14520 791 ## COG0004 Ammonia permease + Prom 14978 - 15037 6.1 16 11 Op 1 1/0.167 + CDS 15258 - 16166 471 ## COG4555 ABC-type Na+ transport system, ATPase component 17 11 Op 2 . + CDS 16189 - 16941 176 ## COG0842 ABC-type multidrug transport system, permease component 18 12 Tu 1 . - CDS 17217 - 17723 264 ## LC705_00020 abortive infection protein - Prom 17958 - 18017 5.0 + Prom 18576 - 18635 2.6 19 13 Tu 1 . + CDS 18741 - 19166 102 ## LC705_00019 hypothetical protein - Term 19182 - 19215 2.1 20 14 Op 1 . - CDS 19245 - 19439 256 ## LCABL_00160 hypothetical protein 21 14 Op 2 31/0.000 - CDS 19479 - 20498 844 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 22 14 Op 3 . - CDS 20491 - 21969 1383 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 - Prom 22068 - 22127 7.4 + Prom 22193 - 22252 6.0 23 15 Tu 1 . + CDS 22280 - 22786 507 ## COG0693 Putative intracellular protease/amidase + Term 23034 - 23077 6.1 - Term 23020 - 23063 6.1 24 16 Op 1 21/0.000 - CDS 23079 - 23315 391 ## PROTEIN SUPPORTED gi|116493585|ref|YP_805319.1| ribosomal protein S18 25 16 Op 2 24/0.000 - CDS 23407 - 23997 501 ## COG0629 Single-stranded DNA-binding protein 26 16 Op 3 24/0.000 - CDS 24027 - 24323 502 ## PROTEIN SUPPORTED gi|199598221|ref|ZP_03211642.1| Ribosomal protein S6 - Prom 24384 - 24443 2.7 27 16 Op 4 . - CDS 24450 - 24881 482 ## COG0629 Single-stranded DNA-binding protein - Prom 25128 - 25187 5.5 + Prom 24691 - 24750 4.6 28 17 Tu 1 . + CDS 24991 - 25083 69 ## 29 18 Op 1 . - CDS 25205 - 25717 368 ## LC705_00010 pediocin PapC-like protein - Term 25751 - 25784 3.8 30 18 Op 2 . - CDS 25812 - 26039 255 ## LGG_00008 hypothetical protein - Prom 26084 - 26143 10.8 + Prom 26097 - 26156 8.0 31 19 Tu 1 . + CDS 26184 - 26375 192 ## gi|229551096|ref|ZP_04439821.1| conserved hypothetical protein 32 20 Tu 1 . - CDS 26416 - 26517 119 ## - Prom 26542 - 26601 3.4 - Term 26653 - 26701 10.2 33 21 Op 1 24/0.000 - CDS 26735 - 29347 2735 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 34 21 Op 2 9/0.000 - CDS 29410 - 31371 1911 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 35 21 Op 3 9/0.000 - CDS 31403 - 32521 1014 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 36 21 Op 4 . - CDS 32518 - 32730 296 ## COG2501 Uncharacterized conserved protein - Prom 32799 - 32858 6.0 + Prom 33151 - 33210 8.7 37 22 Tu 1 . + CDS 33305 - 33487 112 ## LC705_00003 hypothetical protein + Term 33530 - 33570 -0.4 - Term 33518 - 33558 4.2 38 23 Op 1 16/0.000 - CDS 33596 - 34735 1037 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - Prom 34760 - 34819 8.2 39 23 Op 2 . - CDS 34909 - 36258 1302 ## COG0593 ATPase involved in DNA replication initiation - Prom 36381 - 36440 3.6 + Prom 36884 - 36943 5.3 40 24 Tu 1 . + CDS 37004 - 37144 234 ## PROTEIN SUPPORTED gi|116496325|ref|YP_808059.1| 50S ribosomal protein L34 + Term 37145 - 37177 4.0 - Term 37073 - 37112 2.1 41 25 Tu 1 . - CDS 37133 - 37249 57 ## + Prom 37826 - 37885 4.5 42 26 Op 1 22/0.000 + CDS 37905 - 38261 381 ## COG0594 RNase P protein component 43 26 Op 2 16/0.000 + CDS 38291 - 39127 748 ## COG0706 Preprotein translocase subunit YidC 44 26 Op 3 . + CDS 39145 - 39912 716 ## COG1847 Predicted RNA-binding protein + Term 39990 - 40033 7.1 Predicted protein(s) >gi|225002562|gb|ACIZ01000017.1| GENE 1 26 - 655 485 209 aa, chain - ## HITS:1 COG:no KEGG:LC705_00036 NR:ns ## KEGG: LC705_00036 # Name: map # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 209 1 209 209 376 100.0 1e-103 MIVGLILNAAGNGLCIVGAMGSGLWTAAAINLNDWQGWNIGAVLFTFGVLNAISNLILIR QWDWPRFIGEVIYTLFFSYFVNVFTWLFTWLGLGNWPVIARIFVSCFGVFCFCVAISLYQ RANIIMHPNDDTTNILRFLYFKGNATASQLTDFIPPIIVTVIAWAATGKLLGINIATLFS FLGNGVMIAWADEHVWPQLQHNFKVKATR >gi|225002562|gb|ACIZ01000017.1| GENE 2 810 - 2252 1286 480 aa, chain - ## HITS:1 COG:SPy0713 KEGG:ns NR:ns ## COG: SPy0713 COG4690 # Protein_GI_number: 15674771 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 1 474 1 468 472 429 47.0 1e-120 MNQFVNHLSCTALLVGKKASVDGSTMIARNEDAAGGINPKRFIVVKPDEQPQRYVSTFNG FQLDLPQNPLQYTCTPVADTSDGTWGEAGINSENVAMSATETEFTNTTMLGLDPLEPDGI GEEAMLTVVLPYIHNAREGVQRLGELLTKYGTCESNGIAFSDADEVWYFETVGGHHWAAE RIPDDRYVLAPNQTGIQEIDFDAPDDFQYSADLKAFAEKYHLNKAKKGFNFRDIFGEDTQ ADHFYNTPRVWYAQKMLNPEVDQDPESRTMPFSRVPSHLLSVEDVAMVLSSHYQATEFDP YGQTGTAETRHRYRPIGMNRNQEMHILQIRPNMPKAHAAIHWLAEGVNIFNSPVPFFANC TTTPENFQYTPTDKSSTDSFYWLNKLIAMVADPLFAEHNWDAEVAVSESRKFGFAAGRAA VAKGDAEFADVKPEDLPAWHDELNAETAATITNDLQYLLHQLVCIRAEKMTPTFEKGGEL >gi|225002562|gb|ACIZ01000017.1| GENE 3 2203 - 2475 101 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|199599498|ref|ZP_03212888.1| ## NR: gi|199599498|ref|ZP_03212888.1| hypothetical protein LRH_09253 [Lactobacillus rhamnosus HN001] # 1 55 1 55 64 97 78.0 4e-19 MKATNDDMGMYWSANMCQERYTYKIAPTRTSIKAKFFGQKLLTQNGHGLQKITSPAPALG PTSAMIKATERKRVYESVCEPFELYSIACW >gi|225002562|gb|ACIZ01000017.1| GENE 4 2530 - 2868 194 112 aa, chain + ## HITS:1 COG:no KEGG:LC705_00034 NR:ns ## KEGG: LC705_00034 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 112 1 112 112 212 100.0 3e-54 MTKLKKMTLNQKLATIIYTIIGLFVIGHLTPIMAVRTKLLMNGYFQSAFCARIQRSSENA YAPAYSHDDEGTVYYVKPSPVSQAELKQTTARLNRYAVKTFILSFAEVTWAD >gi|225002562|gb|ACIZ01000017.1| GENE 5 2875 - 3477 515 200 aa, chain - ## HITS:1 COG:L0026 KEGG:ns NR:ns ## COG: L0026 COG0110 # Protein_GI_number: 15673963 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Lactococcus lactis # 52 200 1 149 153 214 66.0 6e-56 MTIQDKMHQGALYQPMNADLQKEQLAAIDQLAIYNQIPASHQAERFAQLKKMFAEIGAKS YIEAPFHSNFGGAHVHFGSGIYANFNLTLVDDTHIYVGDRTMFGPNVTLVTATHPIDPTL REQGYQYNKPIHVGRNCWFGANVTVMPGVTIGDNTVIGAGSLVTKDIPANVVAFGSPCHV VRNITEEDRKTYDHGKPIDL >gi|225002562|gb|ACIZ01000017.1| GENE 6 3730 - 4329 401 199 aa, chain - ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 5 174 2 167 188 65 26.0 4e-11 MFENSKSRLDAISDGVFAVVLTLMVLDIKVPKTLTKVDLYATGFSVVIYFISFAVVGQYW IFHQELLHTVQQPSTNFLVLNFFYLVFICLVPFATSFISDHPGSRISATLFAVIIFMVDL FQFILFRLVIGERPKKENLNAHDWEEYRAASLMVLVAVIYILVGLLLPKWILVVIALGLG ARTLNNTIGHRLQHQGKTQ >gi|225002562|gb|ACIZ01000017.1| GENE 7 4499 - 5272 782 257 aa, chain + ## HITS:1 COG:RSp1268 KEGG:ns NR:ns ## COG: RSp1268 COG0730 # Protein_GI_number: 17549487 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Ralstonia solanacearum # 8 256 7 249 252 85 32.0 7e-17 MTFSIFAFLLVAGIGAGLTATLAGLASLVSYPALLAIGVPPVIANVTNTAALVFTGVGSA VSSLPELRGRGKFLWRLILIVSLGSIFGSALLLIAPASTFEKIVPFFIIAAGLLLLFSGK LPTQEHRPGEPVKTLTFRQEAAQTIVIFVTGAYAGYFGAAAGVVMLATLTLTVDQPFIVS NSMKNLTGFAANAIATVIYAFTTKIEWLMVIPLGIGLFIGGYIGPIIARRLPVQLLRVII AALAFLLAAKLFAQAYL >gi|225002562|gb|ACIZ01000017.1| GENE 8 5448 - 5768 167 106 aa, chain - ## HITS:1 COG:no KEGG:LGG_00036 NR:ns ## KEGG: LGG_00036 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 5 106 1 102 102 141 96.0 6e-33 MAEILIRVVIGFYGFLMLLTIWQAGKTNQNASYLNQLFALAAALVLTAAVIPDKFSALVI LLIGLLGLSAVSWFNGIRLYGRPHIKHHLIRLVVHLILFGLAMWLL >gi|225002562|gb|ACIZ01000017.1| GENE 9 5777 - 6583 775 268 aa, chain - ## HITS:1 COG:CAC0522 KEGG:ns NR:ns ## COG: CAC0522 COG0561 # Protein_GI_number: 15893812 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Clostridium acetobutylicum # 4 264 2 262 265 157 34.0 2e-38 MQNVKLIASDMDQTLLTSEGTLPPHFDRYLQRLNQAGIEFVAASGRPLYTLQETFPHFTK QISLVCDNGGLVASHGQIIGKSLIPAAAYREIVAFICDKTDGVPVLCALDAAYINAADGQ YAPALLPFYHQLKKVPDLMAASLEVDKVTIYFPNADSRVNAERYFRPAFGQNYTVQVSGE TWLDIQNLGVNKGRGMRILSRHFDIPTAQMMAFGDYDNDIPMLETVGYSYIMANATQGMA QHAKYRTRSNDEFGVLHVMDQVLQAQEG >gi|225002562|gb|ACIZ01000017.1| GENE 10 6629 - 7141 515 170 aa, chain - ## HITS:1 COG:CAP0046 KEGG:ns NR:ns ## COG: CAP0046 COG1309 # Protein_GI_number: 15004750 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 5 164 18 180 188 91 29.0 8e-19 MSQFKAALLQILATKSLDEVTVTEICRQADLNRGTFYLHFASPLALFEQIETDLLNEIQP YLSVKIDDMTKMLVPILKVITQHPQAATIILTNPDSTVLEKIVRPIQTQTQARYQAWYRE ADPKQLAYYYAFFVQGAEGMLTMWLKQGMKESPEQIAKVIENVVTKGAPH >gi|225002562|gb|ACIZ01000017.1| GENE 11 7353 - 8054 316 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 216 2 217 245 126 36 2e-28 MAYIEVKHESKRYQMGETVITANHDINFSADQGKLTVILGPSGAGKSTLLNILGGMDSPT EGEVWIDGTDIATFSDRQLTAFRRHNVGFVFQFYNLIPNLTTKENVELAGSIVADALDPT TVLKQVGLGARLDNFPSQLSGGEQQRVAIARALAKNPKLLLCDEPTGALDYKTGKQVLQL LQDASRKDHKTVLIITHNAAIAKMADRVVEINDARVRSIHDEPAPTPVADIEW >gi|225002562|gb|ACIZ01000017.1| GENE 12 8064 - 10637 2025 857 aa, chain + ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 2 855 7 894 896 442 31.0 1e-123 MKPLTKNLWRNIRDSLGRFIAIVIIIMLGVLLFVGVKATGPALKDSLNTTVKADHLADAQ LLATTGVSSAQVKAAQSVKGTQAEAVKFKYAIGGRSSDVVALYGYQKTATINRLHLTSGR LPTHRDEIVLDTVAKKSGYRLGQHYTFARSSGLKDRTYTITGFADSPAYIEDTSRGSANI GDGTVRYFAYIPDQQMNLPVASQLNIRFPNLQTRDTFSTAYQDAVTAKMKQVKQRVKAQA QADLAKTIQAKMTQAAMTKATNQAVAAGMPATAATATATQTVKTYQAGFKKQATATARHQ LTTSLTWQTRDDLPGFGDYGGSADRIAAIANVFPVFFFLVAALITFTTVSRMVEEARAQI GTFKALGYGKWAIARNYLAYAALAGLLGGIIGVFAGNFSIPRIVLSLYKNYIPLKQVISL QWPLIFLSLLLALIATLGAAIIVVRNELTEKPAALMRPRAPKSAKRILLERITPLWSRLS FNQKVSYRNLFRYKSRLVMTILGIAGGTALILTGFGIKDSITATGTLQYGDVIHYQAIVR LADGKQPAAAKTILQKSRAYRSAVSVSSTTAKLSSNGHQISDVNLFAPTTGKQLEPYVSL RSTTTNQALTLPSTGIVITSKLAKALKLNTGDRLKVTTTAGQAHRFTVKGIAKNYVGHFG YLSATAYQQLVGKQSAPNSLLVRLRSQSQQQDDRLAKRLLNHHAIVGISFTTTAKKTLHN MSGMLNPIVLIFILLSAVLSFVVLYNLNNINVSERIRELSTIKVLGFFDREVTMYISRES IVLTIVGILLGYGLGNLLTAYILFQAETEAVVFPLTISMIGYLTATLLMMAFTGIVTWLT HRRLQRVDMVEALKSNE >gi|225002562|gb|ACIZ01000017.1| GENE 13 10840 - 12090 1083 416 aa, chain + ## HITS:1 COG:SPy0019_2 KEGG:ns NR:ns ## COG: SPy0019_2 COG3942 # Protein_GI_number: 15674263 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Streptococcus pyogenes M1 GAS # 302 384 31 102 135 71 50.0 4e-12 MKFNKAMMTLVAAVTLAGSVSAVTPVFADTSASIASNKSETNDLLKQIEAANTEVINLNK QIDAKNGEISDATAKISATDAKIASLSGEITAAQKNVAARKNNLKDQLISLQKKAGSSVS GNVYIDFVLNSQSLSDLIARTMTVGKLSQASKDALDAVTVAKDKLAALKSEQETARQTLV STKASLETQKSQLETLQKTASDKQDALNKEIADHKDELVALQSQFAQEQSEAAKATQAAL KTAAASTASSSTSSTSNKSANSSVLSTGTSSTNTSSNSGASSTVISSNTASGSGSHADYS GSGNTYPWGQCTWYVKSVASWAGNGWGNGAEWGASAAAAGFTVNHTPAAGSIIVFAAGQS VGGQWTADGSYGHVAYVQSVSGDSVTITQGGMGFSSPTGPNTQTISGASSYVYIHR >gi|225002562|gb|ACIZ01000017.1| GENE 14 12308 - 13417 802 369 aa, chain - ## HITS:1 COG:SA2370 KEGG:ns NR:ns ## COG: SA2370 COG0492 # Protein_GI_number: 15928163 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Staphylococcus aureus N315 # 20 369 22 368 368 278 42.0 1e-74 MNQMTIIGGGAAGVGIGIMLEQLGCSQFQILEQEEIGASFRRWPKETRFITPSFTSNGFG MPDLNAVSMETSPAYTLGAEHLSGSQFADYLKLLADTYALPIAEHTRVGAISPTTEGYQL ETNHGVVTTKYLIMAVGQYAFPKLTDHPENVIHYQQVTSWQDLTGKTQIVIGGNESGVDA AINLATLGHKVLLLTKETGLNAASADPSIRLAPYTRRRFLDLPAEVANRITLQEKIALKT VTRTQDSQYQLWFTDGRTITTPYKPVLCTGFDAGPLKLWPQLFENNDGEIALNDVDESTQ AKNVFVAGPDVRHEDAIFCYIYKFRQRFGVIVNEIAKREQWDIGDFVKISRANSFYLDDC ATCDVACDC >gi|225002562|gb|ACIZ01000017.1| GENE 15 13435 - 14520 791 361 aa, chain - ## HITS:1 COG:lin1551 KEGG:ns NR:ns ## COG: lin1551 COG0004 # Protein_GI_number: 16800619 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Listeria innocua # 1 284 4 309 401 127 30.0 2e-29 MFALVCFLIMLPMIFSVPLLYVGMMPRVRQQSALLTMSIALMIAIACWLVFGNRLAFGFD LLHATTFSSLSAGLVQMDFYLYAVAMLMGTIAGNRNSRYMFGFVPVWTVLVYCPLAHWLW ADHGWLRQLGALDFSGGIVVHLTAGLTSLVLAKALLPGDQPSMPNDFRTDYAATIMILVG WLGFNLAPAGSLNKLAGQVLINTFVAVLMAMIGWYWLTYRQNGVVQLGDLLNGVLCGLVT STALVGYVGALSMAIVAAVAGVICRQMVSKMQHSKHFYDVVDSFAMNAVGGITGAVGLMI VQFFNGTHAIATAGKFAVVELLAVVVAAGLTVIGTMVAQLVAKACEAGVTRVMNLDSERL N >gi|225002562|gb|ACIZ01000017.1| GENE 16 15258 - 16166 471 302 aa, chain + ## HITS:1 COG:CAC3551 KEGG:ns NR:ns ## COG: CAC3551 COG4555 # Protein_GI_number: 15896787 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ transport system, ATPase component # Organism: Clostridium acetobutylicum # 3 227 1 222 238 137 36.0 2e-32 MNMINVNHLNKKFQDKTVLLDVSFSIQEGRITGILGKNGAGKTTLLKILLNLIDKTSGTV DYTFQNKHIAYGNRALYRNVAAVLESVDNLYDYLTGRQNINYFLNLSGISPASKTSEINS LFKKFDLSSAIDQRVGQYSRGMKQKLALISCLVSDASLLFLDEPTLGLDFVASRTLIRQI KEINQQLHKTIILTSHQADVLEKLVDDVLLIDNQKVRFFGPYEEFQKTFSSFGFVVVSSH FSFKANNAITVNSSDDGKRVTTTFKTLKDQQEFLKKLLEHGITIHAVQNRYPSLDELLRL VF >gi|225002562|gb|ACIZ01000017.1| GENE 17 16189 - 16941 176 250 aa, chain + ## HITS:1 COG:PH1848 KEGG:ns NR:ns ## COG: PH1848 COG0842 # Protein_GI_number: 14591595 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Pyrococcus horikoshii # 52 196 54 200 255 62 25.0 1e-09 MIIHLFKAEFSRYLAEVRTYFPDQITSMVVTIIIFVVFTFLNIDAGNSAFYIGYAYWYLI SSIIGEASESISLEKQMGTLDQLLLRPAGLELVLTVKTTVWIIINFIKVFIVLAFIALIF HLNIGFHIGLLPIFFITCIGIFGFSLLLAALTLKYTKTASFQSVISYLLLFLTGSIFPLT QLPEFVQISGRMLPITLGIDLSKQLINQHSVSINTFLLLCVQSLIYVYVGHLAFQRIYRS SKKSGIDNSY >gi|225002562|gb|ACIZ01000017.1| GENE 18 17217 - 17723 264 168 aa, chain - ## HITS:1 COG:no KEGG:LC705_00020 NR:ns ## KEGG: LC705_00020 # Name: not_defined # Def: abortive infection protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 168 58 225 225 262 100.0 3e-69 MAYKLFHKYTNQKIIQRVKLRDIFYVIGGYLTILISNEILSTLNYTIYQRVQTSNNQVIE SSLLSHNQLMVILLAINVIVLGPITEELVFRGILMHLFFKQNQLFFKVLLSALIFASAHG GDTIFGFLIYVVNGAVFAVVYLKTGKIQDTIALHFVNNIVAVSTILFL >gi|225002562|gb|ACIZ01000017.1| GENE 19 18741 - 19166 102 141 aa, chain + ## HITS:1 COG:no KEGG:LC705_00019 NR:ns ## KEGG: LC705_00019 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 141 1 141 141 271 100.0 7e-72 MKEEPLSIRSVKDKGSFVVLFDSVNFEPDWHADLNLFLFSILMSEIPLLSGKVWLCSAIH ATWHISAGILFGTSVLGFSETNLFFRSVPTTSTQWLTGGTFGIERSNITLLLFTSLILIV AWHYRQQFKDLHRQVKDYQLG >gi|225002562|gb|ACIZ01000017.1| GENE 20 19245 - 19439 256 64 aa, chain - ## HITS:1 COG:no KEGG:LCABL_00160 NR:ns ## KEGG: LCABL_00160 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 63 11 73 74 94 87.0 1e-18 MKKIWINVFWGLLVVSFWLYQVFWPLFWNPISKFYGMVVLYSIAVVALGLAIRATLKGYG RQKV >gi|225002562|gb|ACIZ01000017.1| GENE 21 19479 - 20498 844 339 aa, chain - ## HITS:1 COG:lin2865 KEGG:ns NR:ns ## COG: lin2865 COG1294 # Protein_GI_number: 16801925 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Listeria innocua # 6 329 2 327 337 165 35.0 1e-40 MPSLSNLQVIFLGIIATELMLFFVLDGADFGAGMATFFVGDDLAKRQQIMKVTGPVWGGN ETWAVTAFAVMFAAYPGWYSALTSGYYPLIFLMLFFLIFRGVAFDYRNQWHSRHYNQFWD WALFVGSLMPPFLLGIVFSSTVSGVPIRNGFVYAGMGDILTPFSLLGGILAVLLSLNVGL TRVIKKVKKDVAVQLTVALKRTTWALYLAVGGFVVLLPFNTRFFTNRPVIVSLLLLLLVA FLGVETWAIFRQRQRLAFWLSVGTMASFIYTIFLGVFPTLIVGRTPGTSVTALSATSGPV SLLWTAWLFGFTIILMVGLQATAYHLINKYYHEPASPMV >gi|225002562|gb|ACIZ01000017.1| GENE 22 20491 - 21969 1383 492 aa, chain - ## HITS:1 COG:L107726 KEGG:ns NR:ns ## COG: L107726 COG1271 # Protein_GI_number: 15672686 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Lactococcus lactis # 10 492 2 473 491 325 39.0 2e-88 MGLTLATVPLAVTNLSRMQFAVTAITHFLFVTTTVGMLLTTMIFEFLYAYGRGDTEKFGR LTLFFSRIFFFSFGTGVVTGLIMEFQFGMNWSAFTRLMGDVAGVPLAIESMISFFIESTI IGLWRFTWGKLPKRAHAWLGVGMLGASLFSVVWIIAINAFMQNPYGFHLENGRARLNSLI TLLQNPQYQPEFLHVLFAILITGGFVTAGVSAWQILHKRDTAAFKIAVQIGLLIALPAAF LQPAQGDDQGAATAALQPMKFTAIEGRYNTEGSATTGAPWAMAALINEKDRTVKAVSIPN LGTYFGKNTFTGAMPGMNVVAKMYHAKFDKTVAKSYDGQMNYYPPVTLLFWTMHLMVYAG YFFTMFALFATVMLHRRKSSIEAHPKTLRALGWTLWLPYLTFTSGWIVAEVGRYPFVVYG LLTQYDAVSPSLTVTEAATSLAMFFVADVFLVSTMIYISHRTVTRGLPEIDGNYLEEHQI PDPFAKEAFSHA >gi|225002562|gb|ACIZ01000017.1| GENE 23 22280 - 22786 507 168 aa, chain + ## HITS:1 COG:BS_yfkM KEGG:ns NR:ns ## COG: BS_yfkM COG0693 # Protein_GI_number: 16077852 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Bacillus subtilis # 3 168 4 171 172 182 57.0 2e-46 MAKIAVLVTDNFEDAELTSPVKALKDQGHDVTLIETQAGKQITGKHGATATIDTTITDVK PEDFDGLLLPGGFSPDELRADDRFVNFVKAFLLDDKPVFAICHGPQFFIQTGLTKGRTMT AYTTVRPDLYYAGAIVKNEPVVVDHNLVTSRTPDDLPEFNQAMLAQLK >gi|225002562|gb|ACIZ01000017.1| GENE 24 23079 - 23315 391 78 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116493585|ref|YP_805319.1| ribosomal protein S18 [Lactobacillus casei ATCC 334] # 1 78 1 78 78 155 100 5e-37 MAQQRRGGRRRRKVDFIAANHIEYIDYKDTNLLDRFISERGKILPRRVTGTSAKNQRKLT IAIKRARIMGLLPFVSED >gi|225002562|gb|ACIZ01000017.1| GENE 25 23407 - 23997 501 196 aa, chain - ## HITS:1 COG:lin0038 KEGG:ns NR:ns ## COG: lin0038 COG0629 # Protein_GI_number: 16799117 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Listeria innocua # 1 196 1 179 179 152 47.0 6e-37 MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAEN FANFTKKGSLVGVEGHIQTRTYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPA GQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQSPAAGQNQGNNGNAANPDPF ANNGKPIDISDDDLPF >gi|225002562|gb|ACIZ01000017.1| GENE 26 24027 - 24323 502 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|199598221|ref|ZP_03211642.1| Ribosomal protein S6 [Lactobacillus rhamnosus HN001] # 1 98 1 98 98 197 100 6e-50 MAETKYEVTYIIRPDLDEAAKTELVERFDNILKENGASIIDSKDWQKRKLAYEINKYNEG LYHIVNLSAEDDKAINEFDRLAKINNDILRHMIVKRED >gi|225002562|gb|ACIZ01000017.1| GENE 27 24450 - 24881 482 143 aa, chain - ## HITS:1 COG:L0301 KEGG:ns NR:ns ## COG: L0301 COG0629 # Protein_GI_number: 15673403 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 143 1 141 141 117 44.0 6e-27 MLNNVSLTGRLTKEPEVFKTAADLELVRFTLAVDRVFKSKTGQRETDFIECVIFGKRALT FASSTTKGSLIGIAGRISNNHFENKQGEQQWRTSVVVDNFAWLESRAMTESRRSGSMQAT GTDGMPPGAPAEPAEIATDDLPF >gi|225002562|gb|ACIZ01000017.1| GENE 28 24991 - 25083 69 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPAYTLDQFSRMIDHTNLHADATHVVLKRF >gi|225002562|gb|ACIZ01000017.1| GENE 29 25205 - 25717 368 170 aa, chain - ## HITS:1 COG:no KEGG:LC705_00010 NR:ns ## KEGG: LC705_00010 # Name: papC # Def: pediocin PapC-like protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 170 1 170 170 334 100.0 6e-91 MKKIIKLAIAGFIGIITFTLLLNPIRVSAHEDADIPQVTEKEYLNNINGVKQIDSDQYLE LVNSGDASSDFVVYFGFKECPYCRAVSRTLKQFISEAKHPIYYMNMDESFTETTADDYKQ ILESLSPFKFHGTPTFAYFHNNKIRNMLVGYPITLQQFTQTEVSVLNKQQ >gi|225002562|gb|ACIZ01000017.1| GENE 30 25812 - 26039 255 75 aa, chain - ## HITS:1 COG:no KEGG:LGG_00008 NR:ns ## KEGG: LGG_00008 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 75 2 76 76 72 100.0 6e-12 MTTTLSLYDALGEDQLQGINGGRGKCSANEANKAMGNAFVGGFVGGLPGGFLTALGAGGA GGLATGAGYWATCWW >gi|225002562|gb|ACIZ01000017.1| GENE 31 26184 - 26375 192 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551096|ref|ZP_04439821.1| ## NR: gi|229551096|ref|ZP_04439821.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 63 1 63 63 95 100.0 7e-19 MKNAKNKNSVIGIFILFSILIYLYGNIFVSPNNWLNPVALVVSLMIGGIAAAVFYHMVKR KNN >gi|225002562|gb|ACIZ01000017.1| GENE 32 26416 - 26517 119 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLNNVSLTGRLTKEPEVFKTAADLEPVRFTLVV >gi|225002562|gb|ACIZ01000017.1| GENE 33 26735 - 29347 2735 870 aa, chain - ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 5 807 2 804 822 1092 68.0 0 MDDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTP EKPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA MRYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMT TNIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGT IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQEN VIRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQ SQAILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFG DKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQGMNVH DDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGVGAGEKIQT VINVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNNVILTSGQD NILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYVVGSDILKPDSEVFVISEKGY GKRTAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSGVMIRFNIQNV SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDSSKPDQPTDPQAGPTDEHAQPADG QYAGNADEQVNKLLDRAETDKPAPDDGDEA >gi|225002562|gb|ACIZ01000017.1| GENE 34 29410 - 31371 1911 653 aa, chain - ## HITS:1 COG:L0283 KEGG:ns NR:ns ## COG: L0283 COG0187 # Protein_GI_number: 15672887 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 9 645 3 646 651 822 67.0 0 MTDKKESAEEKKEELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNG IDEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQAKTGRPALETVYTVLHAGGKFGGG GYKVSGGLHGVGASVVNALSTNLDVTVVRGGKRYYIDFVRGKVNTPMKELGPAPEHEHGT KVHFQPDPDIFTETTTFDDKVLTTRIRELAFLNKGLKLTFTDKRAATHEKLVFHYEGGLK SYVDFLTKKKENLLQEPIYVEGQDKGITVEVALQYTNDYHSTLLTFANNIHTYEGGTHET GFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNS DARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISNL PGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERILA NEEIRTLFTAMGTGFGQDFDISKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDA GYVYIAQPPLYRLRQGKMMRYIDSDEELQDILGQLPPSPKPDIQRYKGLGEMDASQLWET TMDPDTRRLLRVSPKDAEQADGIFEMLMGDHVEPRRKFIEENAVFVDPNNIDV >gi|225002562|gb|ACIZ01000017.1| GENE 35 31403 - 32521 1014 372 aa, chain - ## HITS:1 COG:SA0004 KEGG:ns NR:ns ## COG: SA0004 COG1195 # Protein_GI_number: 15925709 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Staphylococcus aureus N315 # 1 370 1 370 370 375 53.0 1e-104 MKLDHLTLKNYRNYATVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL IRFGSDFARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVILFAPED LAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDLVYLDV LTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAYQTQVTADLRQDSEQV YEALGALFAKQQSREIEQGTSLVGPHRDDVLFIVNDKDVANFGSQGQQRTTALAVKLAEI DLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAIQAKVQTFLTTTSLDGIQKEIITAPAI FQVQDGVLTKQA >gi|225002562|gb|ACIZ01000017.1| GENE 36 32518 - 32730 296 70 aa, chain - ## HITS:1 COG:BH0003 KEGG:ns NR:ns ## COG: BH0003 COG2501 # Protein_GI_number: 15612566 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 4 66 5 67 73 81 58.0 3e-16 MTTIKITTAFLTLGQFLKEAGLIDSGGAAKWYLGEHPVTVNGAAEDRRGRKLYPDDQIKV ADQTYVIVSA >gi|225002562|gb|ACIZ01000017.1| GENE 37 33305 - 33487 112 60 aa, chain + ## HITS:1 COG:no KEGG:LC705_00003 NR:ns ## KEGG: LC705_00003 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 60 1 60 60 99 100.0 3e-20 MAPTMKSVFGMFVAFSVTIYVYGNIMADFRNWLSLPLILVSLLIGCLAASLYYRFGKRKY >gi|225002562|gb|ACIZ01000017.1| GENE 38 33596 - 34735 1037 379 aa, chain - ## HITS:1 COG:lin0002 KEGG:ns NR:ns ## COG: lin0002 COG0592 # Protein_GI_number: 16799081 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Listeria innocua # 1 379 1 381 381 326 47.0 4e-89 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDNFQTVITSGASEFTIRGEDAN NYPRLPEITADEALSVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGDQLVAVATDS HRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFGQTAFY SRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNIGEQKA TIYGNSPDVGNVEEVLSFNKLTGQDLEISFNPDYMKDALQGFGQTAIEVDFTAPLRPFTL VPTEDKEKFIQLITPVRTF >gi|225002562|gb|ACIZ01000017.1| GENE 39 34909 - 36258 1302 449 aa, chain - ## HITS:1 COG:BS_dnaA KEGG:ns NR:ns ## COG: BS_dnaA COG0593 # Protein_GI_number: 16077069 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus subtilis # 1 446 1 446 446 437 50.0 1e-122 MPNLEELWAYLNDKFREELTPVGYSTWIQTAKPVKLTQDKLEIEVPASLHKAYWEKNLVT KVVEGVYEFAQLEVDPVIMTKDELQPASTHQHQVTDDDDDQQLTFKAKTHLNPKYTFDRF VIGKGNQMAHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLMQAIGNLVLENNPAANIKYV TSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGDKEATQEEFFHTFNTLYENM KQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETRIAILRNKANAEDLSIPDDT LSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTSLAADALKALKLDDRSGQLTIPQIL DAVAKYFQVTVQDLKGKKRVKQIVIPRQIAMYLAREMTDNSLPKIGQEIGGKDHTTVIHA HEKIMAAMTTNEDLKAHVVELRNILKNRG >gi|225002562|gb|ACIZ01000017.1| GENE 40 37004 - 37144 234 46 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116496325|ref|YP_808059.1| 50S ribosomal protein L34 [Lactobacillus casei ATCC 334] # 1 46 1 46 46 94 100 8e-19 MTTKRTFQPKKRHRERVHGFMKRMSTKNGRKVLARRRAKGRKVLSA >gi|225002562|gb|ACIZ01000017.1| GENE 41 37133 - 37249 57 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAKTRPLGSEATYTPVSNRAGSRSALKKTTDAVSGLGR >gi|225002562|gb|ACIZ01000017.1| GENE 42 37905 - 38261 381 118 aa, chain + ## HITS:1 COG:lin2987 KEGG:ns NR:ns ## COG: lin2987 COG0594 # Protein_GI_number: 16802045 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Listeria innocua # 1 113 1 113 119 107 51.0 5e-24 MRKSYRIKKEVEFQNVFDHGDSVANRNFVIYHMKRDQPHFRVGISVGKKVGHTAVMRNQI KRYIRQSLLELKPEIDPQTDFLVIARKSANQLDMAETKKNLIHVMRLAGILNEDIEVI >gi|225002562|gb|ACIZ01000017.1| GENE 43 38291 - 39127 748 278 aa, chain + ## HITS:1 COG:lin2986 KEGG:ns NR:ns ## COG: lin2986 COG0706 # Protein_GI_number: 16802044 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Listeria innocua # 9 278 11 287 287 249 48.0 3e-66 MKNRQFKRLLVIVSMLSLVFLLTACGTAPVSENSTGFWDRYVVYTAGQFVIWLANLFGGN PGVGIIAFTLIIRILIFPLSYLSIKSMAKQQEIAPQLKELQKKYSSKDTETQTKLRDETQ KLYASAGVNPVMGCLPIVIQMPFLIALYQAILRTSSLQSGTFLWMNLSQPDPLWIMQILA TLFTLGTSILSMMAQPTRNSSSWVMMIISPAMIFVFSVTLPSALAIYWVVTNAFSMVQQL LIQNPFKIRREREEKARAEKEKERALRKAYKKATKRRK >gi|225002562|gb|ACIZ01000017.1| GENE 44 39145 - 39912 716 255 aa, chain + ## HITS:1 COG:lin2985 KEGG:ns NR:ns ## COG: lin2985 COG1847 # Protein_GI_number: 16802043 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Listeria innocua # 70 252 20 203 206 134 39.0 2e-31 MPTFQGSTIQRAIEAGLKQLGLPRDAVSVQVVQENKNGFLGFMRKPAIVNLKPLEPPADP APDPKAKEPATGKSSAGKLAVALTDSAGKKIASAFNDITTKKRDNQTALAMVQSYLEDIT SGMGIKTQVSSERQGNTVTFQLKTDEEGLLIGKHGKIINAIQYLAQTEFNHYGKSKWTIM LDVGDYRERRQATVTRLAERTAREVLATGKAIYLDPMPSFERKAIHTTLADNQYVDTHSE GVDPRRYVVVTPKRP Prediction of potential genes in microbial genomes Time: Wed May 25 19:28:08 2011 Seq name: gi|225002561|gb|ACIZ01000018.1| Lactobacillus rhamnosus LMS2-1 contig00021, whole genome shotgun sequence Length of sequence - 22623 bp Number of predicted genes - 21, with homology - 18 Number of transcription units - 11, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 11/0.000 + CDS 108 - 1496 1337 ## COG0486 Predicted GTPase 2 1 Op 2 . + CDS 1537 - 3438 1747 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division + Term 3482 - 3516 5.1 - Term 3456 - 3514 17.6 3 2 Op 1 . - CDS 3564 - 4787 481 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 4 2 Op 2 . - CDS 4797 - 5183 232 ## LGG_02936 ABC transporter ATPase and permeases - Prom 5287 - 5346 5.2 + Prom 5263 - 5322 6.1 5 3 Tu 1 . + CDS 5483 - 5701 235 ## LC705_02903 hypothetical protein + Prom 5719 - 5778 2.1 6 4 Tu 1 . + CDS 5841 - 6047 155 ## + Term 6078 - 6110 1.1 + Prom 6157 - 6216 2.8 7 5 Op 1 12/0.000 + CDS 6252 - 7016 656 ## COG2966 Uncharacterized conserved protein 8 5 Op 2 . + CDS 7018 - 7506 449 ## COG3610 Uncharacterized conserved protein 9 5 Op 3 . + CDS 7503 - 8702 1105 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 8809 - 8846 3.0 10 6 Op 1 . - CDS 9102 - 9278 179 ## LC705_02898 hypothetical protein 11 6 Op 2 . - CDS 9232 - 9417 131 ## LC705_02897 hypothetical protein - Prom 9453 - 9512 3.0 + Prom 9299 - 9358 3.3 12 7 Tu 1 . + CDS 9486 - 9785 56 ## - Term 9578 - 9626 8.2 13 8 Tu 1 . - CDS 9659 - 10744 1114 ## COG0371 Glycerol dehydrogenase and related enzymes - Prom 10925 - 10984 5.2 + Prom 10718 - 10777 6.7 14 9 Op 1 . + CDS 10937 - 11536 407 ## LC705_02895 hypothetical protein 15 9 Op 2 . + CDS 11533 - 11658 112 ## + Prom 11685 - 11744 4.2 16 9 Op 3 . + CDS 11807 - 12031 97 ## gi|229551126|ref|ZP_04439851.1| conserved hypothetical protein + Term 12032 - 12091 19.4 17 10 Op 1 . + CDS 12254 - 13093 896 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 18 10 Op 2 1/0.000 + CDS 13123 - 13905 504 ## COG0388 Predicted amidohydrolase 19 10 Op 3 . + CDS 13972 - 15141 826 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 15151 - 15200 5.2 + Prom 15165 - 15224 7.4 20 11 Op 1 . + CDS 15407 - 18565 2027 ## COG3291 FOG: PKD repeat + Prom 18581 - 18640 1.5 21 11 Op 2 . + CDS 18662 - 22622 2788 ## LC705_02890 adhesion exoprotein Predicted protein(s) >gi|225002561|gb|ACIZ01000018.1| GENE 1 108 - 1496 1337 462 aa, chain + ## HITS:1 COG:lin2943 KEGG:ns NR:ns ## COG: lin2943 COG0486 # Protein_GI_number: 16802002 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 8 462 3 457 457 554 64.0 1e-157 MATSITAYDTIAAISTPPGEGAISIVRLSGETAVATANKVFKGKDLTQVKSHTIHYGHIV DPETGDLIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARMAEPGEFT KRAFLNGRIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVLAQVEV NIDYPEYDTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNVGKSSL LNHMLHEEKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQA ITQADLILLVLDQSEPLTTEDKQLLAATADKKRIIVLNKQDLPARLDTAALLQLVDADEI IKTAIPTSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQASKSLDAVMAGIHA GMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK >gi|225002561|gb|ACIZ01000018.1| GENE 2 1537 - 3438 1747 633 aa, chain + ## HITS:1 COG:lin2942 KEGG:ns NR:ns ## COG: lin2942 COG0445 # Protein_GI_number: 16802001 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Listeria innocua # 4 633 1 629 629 833 65.0 0 MPEVKKFEAGTYDVIVVGAGHAGCEAALAAARMGEKTLLLTISLEMLAFMPCNPSLGGPA KGIVVREIDALGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIEDT PHLDLRQGLATEVLVEDGKAVGIVAATGAIYRAKSIVLTAGTSSRGKIIIGELMYSSGPN NSLPSIKLSENLEQLGFKLRRFKTGTPPRVNGNTIDFSKTEEQPGDKTPNHFSFTTPDSV YLKDQLSCWMTYTNATTHQIIRENLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQ LFLEPEGRDTSEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLK ATLETKVVRNLYTAGQMNGTSGYEEAAGQGIVAGINAARRAQGKGPFTLKRSDAYIGVMI DDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDQRYADFLAKRQAIT DELARLEHTRLKPKDVNPWLEAHHFAPLKDGVLASDFLKRPEINYQTLAQFLPETPTLDH RVIEQVEIQIKYAGYIAKEEASVAKLKRLEGKKIPARIDYEAINGLATEARQKLVKIQPE TIAQASRISGVNPADVAILSVYIEQGRISKVAQ >gi|225002561|gb|ACIZ01000018.1| GENE 3 3564 - 4787 481 407 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 1 385 124 514 535 163 29.0 4e-40 MLTVLQSSITLIGSVIVLLKLNFVLSLIYLLFSLISLLPSAFGRNKLTRQTEKWTHANAD LMLIIKDLFRGRFDIINFGAGPAFYARFNNKLNLEEAEYERMNTYQYWIQFVSWSFAIFA YLSPIFIGIIFLRNGWFGVTKGIIVTLTLTADSVISGIRQLTQIQTKIVSTEKLRRVPIV KNVFLTPNAKESQPAAKDPKTLAINNLSVQRDQHVIFNHLNLTLAPGEKIIVTGPSGIGK STLLKTITGRIKPTNGSIRFQGRPITTGDFVLVSQDVWLFNATLRENITLYQNYSDETLH HILNLVGLDRELGSNALETHIRDNGSNLSGGQAQRIAIARGLLRQSPIFLFDEISANLDD ANAYKIRKLMYSLPSIVIEVAHHYDSALAKENGIHVKKNLLGASLTS >gi|225002561|gb|ACIZ01000018.1| GENE 4 4797 - 5183 232 128 aa, chain - ## HITS:1 COG:no KEGG:LGG_02936 NR:ns ## KEGG: LGG_02936 # Name: not_defined # Def: ABC transporter ATPase and permeases # Organism: L.rhamnosus # Pathway: not_defined # 1 128 1 128 539 223 100.0 2e-57 MNTYRKINLRWVSHQLPALLKVKLVCFALASAFQQLLSGLVLGQLVELDFSDNLKLAEFI FFAVGSFAITAVAEYYFVKAGQRAIRLLNQALKKDYFDDALSKSLSESSEVSDVINRVDG VAKQVEQS >gi|225002561|gb|ACIZ01000018.1| GENE 5 5483 - 5701 235 72 aa, chain + ## HITS:1 COG:no KEGG:LC705_02903 NR:ns ## KEGG: LC705_02903 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 72 2 73 73 107 100.0 2e-22 MKQSLVQSVWFVFLLILAFVPIFGILPGVYLLVTSQHAVNLQPMKGWIRGALVTQGCYVV ALLLIAVFFVPR >gi|225002561|gb|ACIZ01000018.1| GENE 6 5841 - 6047 155 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIAFLPRILLSGLMLLMVVMLVLWLFAIWKKSQFSLLLKCALTLLIVVLMLATLYVILGI LLFAVNTP >gi|225002561|gb|ACIZ01000018.1| GENE 7 6252 - 7016 656 254 aa, chain + ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 243 1 244 250 129 32.0 4e-30 MSQPDTEEILEVCGKVGEIMLNAGAETSRIETTVEYIGHAAGAKVACYATITAVFVSLEN ESRTRLIKSSLGGFNLQKVDELNQLSREFVAHQITFDALKQEVARIERQVINFPWWARIL GAGWVSVAPMLLFKATNGDLAWAFFVGIFGYLAAELVARKTTTPYFKEATGAFVVAILAE LLANIGWGASSGNIIISALMPLVPGVAITNAIREILSRQIISGIVRTVDAVFVAGAIGSG VVIAIVLTQVVGGR >gi|225002561|gb|ACIZ01000018.1| GENE 8 7018 - 7506 449 162 aa, chain + ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 141 7 145 152 92 33.0 3e-19 MRLLVEFIVSVLSSIGFGVITNIPKRALLPAGITGGVSWCAYWLISLQDHSLVLPNFTAT VVIGLLGNYFAIRHRVPVNTIYIPSLVSLVPGGIAYLGARSFTMGKAASAAQQIYNVILI AMALAVGFVVAEVIFKAMRPFLIRFIAKLPKVQTKSRRGKSA >gi|225002561|gb|ACIZ01000018.1| GENE 9 7503 - 8702 1105 399 aa, chain + ## HITS:1 COG:lin2952 KEGG:ns NR:ns ## COG: lin2952 COG1473 # Protein_GI_number: 16802011 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 7 392 10 395 400 425 53.0 1e-118 MSLLATLLQALEDDEQEMIAIRRHLHAHPEVSFHEKQTAAYIKAYYTALDMSVVPCGDGY GMYVDIEGGQPGPKLALRADFDALAIQEDNELPFKSQNPGVMHACGHDAHTAYLLVLAKE LNKIKTQLSGSIRIIHQPAEEVSPGGAKGMIAAGVLAGVTNVIGVHVMSSMPTGLIGYHT GATQTGRANFTDTIIGKGGHASMPHLSNDAIVAGSYLVTALQTIVSRRIDPFDTANVTIG SFDGVGSFNAIKQAVVLKGDVRVMKESTRQTIHQQIVTMNHGLEAMFGVQTKLDYDDNYP VLINDATLTNQAMTAIKAAKIPQITAIKDTGVQDPSEDFAYFAQKVPSSFFYIGCQLPDG SNHPHHSPDFMLDEDAILIAAKAVAAATLGYLDQNKTVQ >gi|225002561|gb|ACIZ01000018.1| GENE 10 9102 - 9278 179 58 aa, chain - ## HITS:1 COG:no KEGG:LC705_02898 NR:ns ## KEGG: LC705_02898 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 58 1 58 58 95 100.0 4e-19 MKNATIVKAAKRQTINHVGARKYLTSATVAGSGAKSKNPEVIERLDHLDGVGGAAFDV >gi|225002561|gb|ACIZ01000018.1| GENE 11 9232 - 9417 131 61 aa, chain - ## HITS:1 COG:no KEGG:LC705_02897 NR:ns ## KEGG: LC705_02897 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 61 1 61 61 121 100.0 9e-27 MTVIPENPTLKYFCPVTDLLFYIMRKETDALMTGTQRHELIDGGNVHEERYYCEGSQTTN H >gi|225002561|gb|ACIZ01000018.1| GENE 12 9486 - 9785 56 99 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMYSQIFTSFKKVSQTLSNETNKSNLAADVIRRIKKALVSISPLRLFNITNPLNISVDYA AASLVTASTFSIDAATFCGVNDLSTKMKVSSGLAANSAT >gi|225002561|gb|ACIZ01000018.1| GENE 13 9659 - 10744 1114 361 aa, chain - ## HITS:1 COG:L198485 KEGG:ns NR:ns ## COG: L198485 COG0371 # Protein_GI_number: 15673538 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Lactococcus lactis # 1 358 1 357 358 374 54.0 1e-103 MKLDLELRPGANRFVSEAGALAYLDTILKDFTNPVVITGEKSFAAFTKAYPGKLNLPIYH YDGSASDENGHALADEIGQADAVVGIGAGRLIDTAKVAAETLGAELVSIPTLASNCAPFT PLAAIYHAQGHTFSYVEYFKKSAYITLVDYNLLLSTPHDFFVAGIGDTLAKWYEMDGITR HKVDQLNAYGQLSRASAKTIQAILFKNAEQALADLDAGRDTPAFEAVADTIIGLAGEVGG FGGIDGRAAGAHATHNGLSYLPETHAVLHGSKVAYGILVQLAETGDDDEIRSLLPFYEKI GLPTNLEDLHVTENVAEKILQVAEFAAKPEETFILVDKSLTPQKVAASMEKVEAVTSEAA A >gi|225002561|gb|ACIZ01000018.1| GENE 14 10937 - 11536 407 199 aa, chain + ## HITS:1 COG:no KEGG:LC705_02895 NR:ns ## KEGG: LC705_02895 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 199 1 199 199 365 100.0 1e-100 MSRISANLAKLMNDYTSFTFGTARRYNVSAYQLEKSISQGVLTKLSIGTYVVSGYLEDEM SIISQRFSRGVFSQETALAFYDLSDEMPWRYTMTFPRGYHAAPNALKDNHIHAQYRTGRY YSAGITTKLTADKNKISIYSVERALLDAWNSPNTQLYVKNDAAKRYMQRKDRNYQELLTL ERELYPKSTLSEVLEVIAQ >gi|225002561|gb|ACIZ01000018.1| GENE 15 11533 - 11658 112 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTANQILDKINQRAQNLDLPKQYFQKMFYLESFLKQVSQLL >gi|225002561|gb|ACIZ01000018.1| GENE 16 11807 - 12031 97 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551126|ref|ZP_04439851.1| ## NR: gi|229551126|ref|ZP_04439851.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 74 1 74 74 134 100.0 2e-30 MQASDENDRGMDSAMSRVRIRPALNGLGVNRHRRGYTVTNQGGTPTLSALLNQFFDSAGP FFVKREPARLETGA >gi|225002561|gb|ACIZ01000018.1| GENE 17 12254 - 13093 896 279 aa, chain + ## HITS:1 COG:lin0313 KEGG:ns NR:ns ## COG: lin0313 COG1464 # Protein_GI_number: 16799390 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Listeria innocua # 1 279 1 273 273 318 59.0 8e-87 MKKWVKLGFSAVVALSLVVILTACGTSQASSKSATDQLSDKTITVGVTAGPHELIMKQVA KLAQKDGLTIKLKQFTDYNSPNVALNDGDLGANSYQTLPFLKEQIKSKNFKITQVFKTVA FPMGVYSKKIKDLKALKKGDSIAVPNDPSNELRALQLFEAAGVIKLKAGISQKATKADVV SNPLGLKIEELEASQLPTHLQDVTAAAINTNFAFDAGLTINQDAIYHEKTTNNPYPNYFV VQTKHRNDKVIKQIKKYYQSQTIKDYIAKKFKGSIVPAF >gi|225002561|gb|ACIZ01000018.1| GENE 18 13123 - 13905 504 260 aa, chain + ## HITS:1 COG:lin0310 KEGG:ns NR:ns ## COG: lin0310 COG0388 # Protein_GI_number: 16799387 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Listeria innocua # 6 260 4 259 259 259 47.0 3e-69 MAQLTIALAQIDIAFGQPEKNFQTVANAVAEAAQQGAEVVVLPEMWNTGYDLEHLTTTAN PDGLRTKAFLSALAQQYHLAIVGGSVAAAENGHFYNRSLTVDQRGRQLAKYDKVHRFRLM NEEKFITAGATADHFTLGVPASVAICYDLRFPEWFRRMASDGTQLFFLPAEWPTPRLPQF NALLAARAIENQAYVVAVNRVGNDPNNAFGGQSQVVDPFGERLLKLDDQPQVRIVTIDLD RIAAARQQIPVFTDRRPELY >gi|225002561|gb|ACIZ01000018.1| GENE 19 13972 - 15141 826 389 aa, chain + ## HITS:1 COG:BS_ykrV KEGG:ns NR:ns ## COG: BS_ykrV COG0436 # Protein_GI_number: 16078422 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Bacillus subtilis # 1 389 1 389 398 509 64.0 1e-144 MTFSESEVLQALPKQFFASLVKHVNERIAAGHDVINLGQGNPDQPTPENIVHATQQAVAR PGNHKYSLFRGLPTFKQAAAEFYAREYGVTLDPEKEIAVLGGSKIGLVELPLALMNPGET ILLPDPGYPDYLSGVTLARVKLVLMTLTAENNWLPDYTKIKPEVAAAAKLLYLNYPNNPT TAVATPEFYDETIAFAKAQQIGIVSDFAYGALGFDGQRPVSFLQQPGAKDVGIELYTLSK TYNMAGWRLAFAAGNADMIEAINLIQDHLFVSVFPAIQEAGIEALLGDQTSVPALVDLYQ QRRDAWFSATTAIGWHGKSSPGTFYAWMPVPAGYTSQTFTELLLDQADVAVAAGNGFGRH GEGYVRIGLLTSPQRLQEAAERIGRLGLF >gi|225002561|gb|ACIZ01000018.1| GENE 20 15407 - 18565 2027 1052 aa, chain + ## HITS:1 COG:MA4289 KEGG:ns NR:ns ## COG: MA4289 COG3291 # Protein_GI_number: 20093078 # Func_class: R General function prediction only # Function: FOG: PKD repeat # Organism: Methanosarcina acetivorans str.C2A # 252 786 527 1113 1734 117 28.0 1e-25 MKFGSKRTVAALRTKQTVHVRFRMYKAKKRWLIAGTALLLMPALFQPGQEVHADSKSPQT TAVTSQSGATAETTAKTATGNTQPAGTTTQNTAAASSSAAVNAASSATQSSASSIASSAV ASTGDSAASTSDATDSKSLATGSAAVKPQTVTQEDRSLASAAVQTTSAAASSTASSASSQ ASLAAQSATTTQANTQAPANATAAESTQTIGDYTYSLDTANGTATVTGRANANVTDINIG ASVTYNGQTFKVTAINNGAFATLNNLGNVNVADTVTSIGENAFAYSQFTGNITIENAIDV GSAAFASVKAVSVTLNGTANIGTKTFAYANLSGGITIADAKTIETQAFFGLTASSLKIDG QADISESAFESANIAGDVTVNNAQTIDKNAFASLKAQALTINGQTDIGEGAFIYAQITGS VNITGANTIGDNAFQFAKVTDAINVPDNVALGEKAFYQVYAASLSLNGAATTFGNQAFAM SRIGQVTINAATIDQQAFFHLYTDQLTFGDDVRVITDGAFQFIENTKELPQIDGKDNPKN QIDSLNLSANIKTITNAAFYAAKITVITVAPDSQLTTLGYQAFAFATVTSMDMPDSLEQI GDQAFYGGKLVKVAFGPKLQSIGNLAFAEFGPLGNADFSRATALETIGDSAFAYNTINNA IAFPAKLVSIGNAAFVGNRIPALKLNNGLQTIGDTAFGYNQIQNELVVPDSVTDIGKYAF VYNSISNLTLGNGLKTIGQEAFEANVILNALTIPSSVTTIGAKAFNVNLMPKVIIAGAPV IGKEAFSTNRITVLQASTAQPATPDALNQSADAYTDSAHVSLSDFFDVAISGVTHQDIVV SNIKGSNGVKVTFDTASKSFKMPAQTQGFSFDWSLKGNDGVTYTGHYNVHLDDPVIRAHD ISLFTGQVWKPELNFIDAVKQDGTSVPLSELTWTVTDENGKIVSEKDKNGIVTGDVDNTQ PTTYTVTYTYGAESGSAKIYYNQRLAASYALVGTQTTTATGQPITVDTKQFSLSLGEGFD AGTLQLSDLNFFDANGNQVAADALTATGVYTV >gi|225002561|gb|ACIZ01000018.1| GENE 21 18662 - 22622 2788 1320 aa, chain + ## HITS:1 COG:no KEGG:LC705_02890 NR:ns ## KEGG: LC705_02890 # Name: not_defined # Def: adhesion exoprotein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 1320 1 1320 2299 1876 99.0 0 MIIGLTATGKLGNGGFVYDGTTLASQANDLAVTVVLSDGTQQTMNLTAADITLVEKNSAN AGTYHYLLNSVGLARLQDLLGETVTIDQTEINQVSGTITITPAEATATGSNVSFVYDGQT KASDAKGIQATLKLGNSSRSVALASSDIVVNNDGLNAGQYSYKLSDAGIAKLQQAAGSNY LVDTTDLSGTVTITPAAATATGNDVTFVYDGQTKASGAKGIQAALKLGDTEQRVALSLAD IVVNNDGVNAGQYSYKLSETGIAKLQQAAGTNYQLSTTDLAGNITITPAVATADSNDVSF EYDGKTKASEAKGIQATVKLGEFGQVVALTSADIVVVNDGVDAGKYSYQLSDAGKAKLQA VTGNNYQLTADDLAKVAGTITITPATTTVDSNDVSFEYDGKTKASEAKGIQAIIKLGEGE KTVYLTSADIVVENDGVDAGQYNYQLSDTGKAKLQSATGNNYQLTADDLAKVTGTITITP AVATVASNDVSFEYDGKTKASEAKGIQATVTLGETEKKVGLTSADIVVANDGVTVGKYTY SLSDSGKAKLQAATGGNYQLTTEVLDKVSGSITITPAGAIATGKDAHFEYDGKTKASEAK GIQAILTIDGTEKTVDLTSGDIVVADDGVDAGQYGYKLSDTGKAKLQSVAGNDHQLTADD LAKVTGIITITPAVATAASNDVSFEYDGKTKASEAAGIQAMVKLGESEQVVALTSADIIV VNDGVNAGQYSYNLSDAGKAKLQAATGNNYQLTADDLAKVTGTITITPAVATANGNDVSF EYNGKTKASEAKSIQATVKLGETEKTVDLTSDDIVVENDGVDAGKYSYQLSDAGKAKLQA AIGNNYQLTTEDLAKVAGAITITPAVATADSNDVSFEYDGKTKASEAKGIQATVTLGETE KTVDLTSADIVVENDGVDAGKYSYQLIDAGKAKLQAATGNNYQLTADDLAKVMGTITITP AAVTADSNDVSFEYDGKTKASEAKDIQATIALGETEKTVDLTSADIVVANDDVNAGQYSY QLSDAGKAKLQAATGNNYQLTADDLAKVAGTITITPATTTADSNDVSFEYDGKTKASEAK GIQATIKLGEIEKTVDLSSADIIVANDGVIVGKYTYSLSDSGKSKLQAATGSNYQLTTEA LDKVSGSITITPAGAIATGKDAHFEYDGKTKASEAKGIQAILTIDGTEKNIDLTSGDIVV AEDGVDAGKYSYRLSDAGKAKLQREAGSDHQLTADDLAEVTGTITITPAIATADSNDVSF EYNGKTKASEAEGIQATVMLGESGQVVALTSADVVVVNDGVGAGKYSYQLSDAGKAKLQA Prediction of potential genes in microbial genomes Time: Wed May 25 19:29:07 2011 Seq name: gi|225002560|gb|ACIZ01000019.1| Lactobacillus rhamnosus LMS2-1 contig00022, whole genome shotgun sequence Length of sequence - 67468 bp Number of predicted genes - 75, with homology - 73 Number of transcription units - 39, operones - 18 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1787 1261 ## LC705_02890 adhesion exoprotein + Term 1818 - 1867 11.2 2 2 Tu 1 . - CDS 1887 - 3122 673 ## LC705_02889 hypothetical protein - Prom 3146 - 3205 3.3 - Term 3195 - 3229 4.2 3 3 Op 1 . - CDS 3246 - 3674 528 ## LC705_02888 hypothetical protein 4 3 Op 2 . - CDS 3749 - 4570 727 ## LC705_02887 transcriptional regulator xre family - Prom 4666 - 4725 3.3 + Prom 4619 - 4678 3.7 5 4 Tu 1 . + CDS 4735 - 5652 887 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 6 5 Op 1 36/0.000 - CDS 5667 - 6860 987 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 7 5 Op 2 . - CDS 6847 - 7536 380 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 8 5 Op 3 . - CDS 7529 - 8596 895 ## LC705_02883 RND superfamily transporter - Prom 8637 - 8696 4.8 - Term 8873 - 8938 5.2 9 6 Op 1 . - CDS 8977 - 10158 647 ## COG2856 Predicted Zn peptidase 10 6 Op 2 . - CDS 10170 - 10946 564 ## LC705_02881 hypothetical protein - Prom 10974 - 11033 6.2 - Term 11047 - 11098 1.5 11 7 Op 1 . - CDS 11275 - 11451 236 ## 12 7 Op 2 . - CDS 11462 - 11722 314 ## LGG_02915 hypothetical protein - Prom 11905 - 11964 6.8 - Term 12005 - 12042 2.1 13 8 Tu 1 . - CDS 12054 - 12839 797 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 12868 - 12927 3.8 - Term 12997 - 13063 10.2 14 9 Tu 1 . - CDS 13118 - 13828 666 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 13852 - 13911 5.6 15 10 Tu 1 . - CDS 13936 - 14154 56 ## gi|229551148|ref|ZP_04439873.1| hypothetical protein HMPREF0539_0404 - Prom 14295 - 14354 1.9 + Prom 14210 - 14269 4.4 16 11 Op 1 4/0.000 + CDS 14298 - 16115 1782 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component 17 11 Op 2 5/0.000 + CDS 16190 - 18208 1410 ## COG3711 Transcriptional antiterminator 18 11 Op 3 15/0.000 + CDS 18213 - 18656 414 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 19 11 Op 4 . + CDS 18660 - 19814 1198 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases + Term 19841 - 19878 6.3 + Prom 19829 - 19888 4.8 20 12 Tu 1 . + CDS 19923 - 20876 773 ## COG0657 Esterase/lipase + Term 20925 - 20957 2.5 - Term 20951 - 20986 2.4 21 13 Op 1 . - CDS 21044 - 21769 491 ## COG1073 Hydrolases of the alpha/beta superfamily 22 13 Op 2 . - CDS 21773 - 21973 238 ## LGG_02907 alpha/beta superfamily hydrolase - Prom 22123 - 22182 7.0 + Prom 22082 - 22141 5.9 23 14 Tu 1 . + CDS 22174 - 23094 987 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 23107 - 23134 -0.1 + TRNA 23300 - 23372 85.0 # Lys CTT 0 0 24 15 Op 1 . + CDS 23622 - 23870 322 ## COG2261 Predicted membrane protein 25 15 Op 2 . + CDS 23886 - 24026 212 ## LSEI_2879 hypothetical protein + Term 24031 - 24073 8.7 - Term 24290 - 24325 4.2 26 16 Op 1 . - CDS 24543 - 24884 229 ## LSEI_2878 hypothetical protein 27 16 Op 2 . - CDS 24868 - 25158 331 ## LGG_02902 phage-related head-to-tail joining - Term 25168 - 25206 7.1 28 17 Op 1 3/0.000 - CDS 25220 - 26761 1300 ## COG3740 Phage head maturation protease 29 17 Op 2 . - CDS 26748 - 27932 688 ## COG4695 Phage-related protein 30 17 Op 3 . - CDS 27937 - 28116 262 ## LC705_00694 hypothetical protein 31 17 Op 4 4/0.000 - CDS 28082 - 29785 1363 ## COG4626 Phage terminase-like protein, large subunit 32 17 Op 5 . - CDS 29782 - 30252 367 ## COG3747 Phage terminase, small subunit - Prom 30304 - 30363 8.1 + Prom 30038 - 30097 3.3 33 18 Tu 1 . + CDS 30251 - 30481 86 ## 34 19 Tu 1 . - CDS 30377 - 30751 67 ## LGG_02896 phage-related HNH endonuclease - Prom 30950 - 31009 2.7 35 20 Tu 1 . - CDS 31026 - 31175 64 ## LC705_01069 hypothetical protein - Prom 31214 - 31273 3.4 36 21 Op 1 . - CDS 31538 - 32929 391 ## COG3378 Predicted ATPase 37 21 Op 2 . - CDS 32922 - 33749 706 ## LC705_01067 phage-related DNA replication protein 38 21 Op 3 . - CDS 33733 - 33918 220 ## LC705_00687 hypothetical protein 39 21 Op 4 . - CDS 33918 - 34190 298 ## LC705_00686 hypothetical protein 40 21 Op 5 . - CDS 34238 - 34429 169 ## LCABL_30840 hypothetical protein 41 21 Op 6 . - CDS 34413 - 34547 128 ## LC705_00684 hypothetical protein 42 21 Op 7 . - CDS 34540 - 34935 355 ## LC705_00683 hypothetical protein 43 21 Op 8 . - CDS 35001 - 35276 311 ## LGG_02887 hypothetical protein 44 21 Op 9 . - CDS 35301 - 35513 159 ## COG1476 Predicted transcriptional regulators - Prom 35558 - 35617 4.7 + Prom 35948 - 36007 1.6 45 22 Op 1 . + CDS 36048 - 36239 114 ## LGG_02886 transcriptional regulator + Prom 36241 - 36300 2.6 46 22 Op 2 . + CDS 36357 - 37514 513 ## COG0582 Integrase + Term 37642 - 37692 12.1 + Prom 37611 - 37670 4.3 47 23 Op 1 . + CDS 37861 - 38790 898 ## LC705_02868 PEP phosphonomutase-like protein + Prom 38828 - 38887 6.2 48 23 Op 2 . + CDS 38969 - 39649 412 ## COG0518 GMP synthase - Glutamine amidotransferase domain + Term 39655 - 39700 8.8 + Prom 39693 - 39752 6.8 49 24 Tu 1 . + CDS 39822 - 40220 432 ## LGG_02882 hypothetical protein + Prom 40336 - 40395 4.6 50 25 Tu 1 . + CDS 40529 - 41383 841 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases + Term 41397 - 41451 2.5 - Term 41553 - 41586 -0.9 51 26 Tu 1 . - CDS 41615 - 42007 182 ## LCABL_00180 hypothetical protein 52 27 Tu 1 . + CDS 41949 - 42107 88 ## gi|229551186|ref|ZP_04439911.1| hypothetical protein HMPREF0539_0442 53 28 Tu 1 . - CDS 42196 - 43173 919 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 43346 - 43405 3.4 + Prom 43121 - 43180 5.5 54 29 Tu 1 . + CDS 43423 - 43938 339 ## LC705_02863 hypothetical protein + Term 44007 - 44059 12.1 - Term 44062 - 44102 0.5 55 30 Op 1 9/0.000 - CDS 44122 - 44811 504 ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 56 30 Op 2 . - CDS 44789 - 46333 1114 ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism - Prom 46453 - 46512 5.0 + Prom 46313 - 46372 4.0 57 31 Op 1 3/0.000 + CDS 46490 - 47815 1153 ## COG3493 Na+/citrate symporter 58 31 Op 2 . + CDS 47852 - 49030 1238 ## COG0281 Malic enzyme + Term 49042 - 49097 1.8 + Prom 49038 - 49097 3.2 59 32 Op 1 . + CDS 49251 - 49499 142 ## LC705_02858 hypothetical protein 60 32 Op 2 . + CDS 49593 - 49883 112 ## gi|229551194|ref|ZP_04439919.1| conserved hypothetical protein + Term 49930 - 49985 21.3 + Prom 50144 - 50203 6.7 61 33 Tu 1 . + CDS 50298 - 51692 1151 ## COG1027 Aspartate ammonia-lyase + Term 51720 - 51778 6.0 - Term 51823 - 51859 3.3 62 34 Tu 1 . - CDS 51904 - 53013 810 ## COG0438 Glycosyltransferase - Prom 53115 - 53174 5.6 - Term 53519 - 53556 3.0 63 35 Op 1 . - CDS 53559 - 55724 853 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 64 35 Op 2 . - CDS 55717 - 56709 463 ## LC705_02854 hypothetical protein 65 35 Op 3 . - CDS 56714 - 57649 608 ## COG0714 MoxR-like ATPases - Prom 57824 - 57883 5.1 + Prom 57781 - 57840 5.0 66 36 Tu 1 . + CDS 57874 - 58497 596 ## LC705_02852 membrane protein + Term 58558 - 58608 9.4 - Term 58545 - 58596 11.2 67 37 Tu 1 . - CDS 58674 - 59222 934 ## PROTEIN SUPPORTED gi|199599470|ref|ZP_03212862.1| Acetyltransferase, including N-acetylase of ribosomal protein - Prom 59248 - 59307 2.6 + Prom 59261 - 59320 4.1 68 38 Op 1 9/0.000 + CDS 59429 - 60889 1305 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 61077 - 61117 -1.0 + Prom 61062 - 61121 3.8 69 38 Op 2 16/0.000 + CDS 61172 - 62626 1331 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 70 38 Op 3 . + CDS 62623 - 63363 258 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein + Term 63391 - 63447 15.4 - Term 63379 - 63433 11.2 71 39 Op 1 . - CDS 63502 - 64368 853 ## COG3001 Fructosamine-3-kinase 72 39 Op 2 . - CDS 64479 - 65255 531 ## COG3910 Predicted ATPase 73 39 Op 3 . - CDS 65287 - 65442 125 ## LGG_02858 membrane protein 74 39 Op 4 7/0.000 - CDS 65492 - 66802 978 ## COG3428 Predicted membrane protein 75 39 Op 5 . - CDS 66795 - 67265 453 ## COG3402 Uncharacterized conserved protein - Prom 67285 - 67344 2.6 Predicted protein(s) >gi|225002560|gb|ACIZ01000019.1| GENE 1 3 - 1787 1261 594 aa, chain + ## HITS:1 COG:no KEGG:LC705_02890 NR:ns ## KEGG: LC705_02890 # Name: not_defined # Def: adhesion exoprotein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 594 1706 2299 2299 966 100.0 0 TGNNYQLTVDDLAKVTGTITITPATTSVDSNDVSFEYDGKTKASEAQGIQATVKLGENAK TVALTAADIVVVNDGVNAGQYGYKLSAAGMTKLRQATGNNYQFKKEDLIKLGGTVTITPA TALADLNDVSFSYDGQTKASQAHDLTANIKLGTKVVSVHLNATDILVTDDGVGVGQYQYK LDANGIAKLRQASGDNYQFDAKVLAGLTGTITIKPVTGAVTVNDTSFVYDGHTKASAAAG LQASLYLPQAEAKTTIQLTREDILVTNDGTAAGTYRYRLSQTGIAKLQKAVGKNYELDQD ELAGLTGTITITPLTVNATVNHGQFQYNGVTRASQAGGLAITVQLPEKSQKIALTNTDIA VENDSVNVGTYTYHLTASGLAKLAVAIGPNYQVTDQTFSGTITITPAPISATLSGRQKKT YDGQPGALNDDYYRLVLGDGTEIQLQAGDLIFVDGQAPVNPGSYAVALSTSGLQRIKALL PNNLLKNVNTQQAIFEIVALPSPDPGTGTTPDTPGHHLPDTGTDTGTTPGTPDHHLPNTG TGTQQSEISTHNGTKHRLPQTGDTQSQTLSLMGLLLATMSGLFGLAGRKRKAHR >gi|225002560|gb|ACIZ01000019.1| GENE 2 1887 - 3122 673 411 aa, chain - ## HITS:1 COG:no KEGG:LC705_02889 NR:ns ## KEGG: LC705_02889 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 411 1 411 411 687 100.0 0 MALYLFLSLLIIVLLILTLLQYLNTNRIVDQQLTQHKMMFPNQIRRARSVYMRGIFRANH RQRNLRTTAIVSDILAAICLVNAVVVHFQPDSTVSLGNSLLRGQALHVSSQLNTTIQNTS LLIGMLLALVSRVVWLYLSRWRYQKLVKADSEHASGPTDLFWTPAVLLQNQYHLQLGIQA VLIVGIIFLALTGLFDWLPTPNNATSQPQSQSVPASPSSSRTSAPSVNTESNTSNASSGS TPQTTQPTYPIDDMKKAPLAPAVALANLTDADRAALLFTMYWTMNGLQTYQVAEYANSTD ETYSYHLVSGASGQLIVFSETIPSVNQSDYMFYAFIQGETVKLYNMYQSKQAITSLASQY NLTVTGTTITPNMPEIQDSNINMRQLISAFLTDPAFAKIKSGLTQGVAVPL >gi|225002560|gb|ACIZ01000019.1| GENE 3 3246 - 3674 528 142 aa, chain - ## HITS:1 COG:no KEGG:LC705_02888 NR:ns ## KEGG: LC705_02888 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 142 2 143 143 221 100.0 8e-57 MMKNLFTNVIAVHANATEVKAMLADPTQMLKWIPEIDTVTEDQNQFQIIRQTTALNQSEM ITVTTAADSITYHSTEGRLAYDLTFTFTTADDQTVVTETLAVPESTDTHLPLKLLAPIAK HAFYENLTNFATLVERLAYETK >gi|225002560|gb|ACIZ01000019.1| GENE 4 3749 - 4570 727 273 aa, chain - ## HITS:1 COG:no KEGG:LC705_02887 NR:ns ## KEGG: LC705_02887 # Name: not_defined # Def: transcriptional regulator xre family # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 273 1 273 273 429 100.0 1e-119 MTTTIGSILKQTRKAQKLTQKTVATGICSQAMLSAIEHDKYIPNVALTLALCRRLGLSLE TLSLAENYAISQTADLNAKLDRLCNAHEYEALLAFLQSPTTSAAIATAAQTEAYYYYLSI AEYQTHHQSALMHIQLALAQHSAGTPLTVLDRLSFATKAVIEATAGQKKAADRDFSTAFE ELETTAYAPNLNSLFYLHAYTAYKAGDYLACANQLQAGIDFATAHGSHYMLANDYYLLAS AAQKLKNADTQREASQRAAIFKELFGDTIFHDF >gi|225002560|gb|ACIZ01000019.1| GENE 5 4735 - 5652 887 305 aa, chain + ## HITS:1 COG:lin0622 KEGG:ns NR:ns ## COG: lin0622 COG0604 # Protein_GI_number: 16799697 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Listeria innocua # 1 305 1 311 313 102 29.0 1e-21 MKQIIQTNYSGIDGLKIVDKPKPAVSPLSALVQVKYTPVLPYDWMTEEGKLKQMRPVKLP LTVGYAFAGVVQAVGLLRDRHLVGQNVIGVQPSGANQTYLDSRLPPFLFPVPAATTLQAA ATLIGGADAAMLAVQTAAVEAGDTVLVTGASGGVGTYLIQLLKKRQARVIALASTINHDF VASLGADIVVNYEHDLAAQLHRVTPPNKIIDTVGQPQLLHLLAEMFDQFALLSLSVPDFQ LRKAGQTFRFTNGTIGINGYRQLLMMLADGTLTAHIQTVYPFEKIREAQWQSKVAHSQGR ILVSF >gi|225002560|gb|ACIZ01000019.1| GENE 6 5667 - 6860 987 397 aa, chain - ## HITS:1 COG:SA0193 KEGG:ns NR:ns ## COG: SA0193 COG0577 # Protein_GI_number: 15925903 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 2 396 3 392 392 177 34.0 3e-44 MRLTELIRISFRALAANKRRSFLTMLGIIIGIASVVTILSLGNGIKAATVKNLQADTQGQ QTAEITFNPNSSGDADAGFKESDVALAKQTAPDKIQKVVIKHEKERLQVMGQLANADTTM SVTLVNKTKPNVSLIAGSGFNQDSLQADGQDALISKNLAKKIFHGNSAALHSSLILGTKS YNIAGVFSPPKSNYSALDVEVLVPEKAYRAGQLSQEGRKLAITYKRGSDVGQLTKNVVKQ LKKSGSEHRSGSYEYFDYGELLKGIGNVISGLTLFVSAIAGISLLIAGVGVMNMMYISAS ERSQEIGIRMAVGATPAEIMKQFLLESVMLTLTGGIIGLLVGAMDAWLIAMFLPFKPVVT VGSIVGTFAISSIVGIVFGLLPAKSAANKNLIDILKS >gi|225002560|gb|ACIZ01000019.1| GENE 7 6847 - 7536 380 229 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 219 1 218 245 150 39 1e-35 MIDLQNVNKSYGQGDTAFHVLKDINLHIDQGEFVAIMGPSGSGKTTLINIIGFLDTAFEG KYLFEDENVANFNATTASHMRNRNVGFVFQNFSLIHNLNIFENVLIPLSYGGKRRSEVKG RIAELLDSVGLPGVEDKLPRNLSGGQQQRVAIARALANSPQFLIADEPTGALDSHTSEDI MQLFKKLHRQGGTIIMVTHDEHVALESDRMIKVLDGQIISDTEVAHATN >gi|225002560|gb|ACIZ01000019.1| GENE 8 7529 - 8596 895 355 aa, chain - ## HITS:1 COG:no KEGG:LC705_02883 NR:ns ## KEGG: LC705_02883 # Name: not_defined # Def: RND superfamily transporter # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 355 1 355 355 540 99.0 1e-152 MKNRQNKHKGISQRLVIIGIGVLAVIVVTIIFFVTQQKQTKPTTAPATLTTYQVKRHELR LSGQVQAVRSQKIDIPEGTVQNLTVKNGDTVAEGQQLLTVYHPDVQQKIATATQSLAKQQ RSQKQLDDQINQLKTSLNQLAADDPQKSEIQSQLTEAQNNRQDAAASVDQATQELNQLQQ DLNTAVKAPFAGRLYIDYQSNGSQSITETSSDMEAVGEVSEFDYNDVKVGQSATVQALST KTKQTTAIDFISSDPAKSSKPNLAKYEVTAKLDQGFLNGQSVSIILPLGGLEIPKTAVRQ GAVYKVVNGRAVRTKITYTKKDNMYEVTEGLDSGDRILQSPTKSIKNGAKVTVDD >gi|225002560|gb|ACIZ01000019.1| GENE 9 8977 - 10158 647 393 aa, chain - ## HITS:1 COG:SP1809_2 KEGG:ns NR:ns ## COG: SP1809_2 COG2856 # Protein_GI_number: 15901638 # Func_class: E Amino acid transport and metabolism # Function: Predicted Zn peptidase # Organism: Streptococcus pneumoniae TIGR4 # 87 391 1 297 298 193 38.0 4e-49 MFIGSKLQALRELNGYTRKELSDVIGVTQQAVWQYENDNVMPKIEILNTFQKIFNVEMLF LISGSAPKHVVHEEKIAFRTSDHSSRKKTKLEARYLDFADDLTSYFEQFVRTSPTGFDQL QKLVHQLVLNQHEPSPIRKVAKVARNFLKLQDNHDLMAKLEQIGIYIVEKDLGSDIDAYS TIADSGRAWIVLGSIKKSAVRRNFDLAHELGHLLLHKTLDFDELTPSEYKQIEHEAHTFA AELLLPLEDFTHDFKALYRRSNPDYYLDLKRKYQVSIVAMAMHAYDLGLMSYQEQRYFFG QRNKKGYRLMEPLDDQLIPVRPGKLRALITLLFNQHILTLNDLYQRLHVRPTFVTRLFAL DSNFFEKYQPQHQYVNHHNIIAFPQSFNRNSSI >gi|225002560|gb|ACIZ01000019.1| GENE 10 10170 - 10946 564 258 aa, chain - ## HITS:1 COG:no KEGG:LC705_02881 NR:ns ## KEGG: LC705_02881 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 258 1 258 258 476 100.0 1e-133 MHHLEIPASIAQQLVDGLMGGYKDYLAERKQKQQSLTISGAFAWTRSNFIDSKISELVSK EPSISSQPDKAGYAWEYIQFIHEQSNHRSLIIVKNARQLKRRFNNTNTTVDKNNYLYQLA GINNELSAAGLLSSRQTNGVIQLELALPDTNNAVVSLMNQTAQKSSPFSKFYIVTYAVDN DSKMIKHIELTMPNQTEMTLKPIQDLTPLIKHSPFQISLEEVEPIQSDQVPDAAYEQNTL FGYEINADPETEMEADAE >gi|225002560|gb|ACIZ01000019.1| GENE 11 11275 - 11451 236 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDSLVLQLLIMVVVALVMTLTIIIAEWRTKTFKTWQISVQSVVAVLLLAIGISLLTVR >gi|225002560|gb|ACIZ01000019.1| GENE 12 11462 - 11722 314 86 aa, chain - ## HITS:1 COG:no KEGG:LGG_02915 NR:ns ## KEGG: LGG_02915 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 86 1 86 86 157 100.0 1e-37 MLEQSTMHPVVWINQHTYISIVKNADYNLEVWEITAENRQHRMARMNYKYHRDNFAGFIY RLFPQIDLIQIHNIQKKLNPYFDLEV >gi|225002560|gb|ACIZ01000019.1| GENE 13 12054 - 12839 797 261 aa, chain - ## HITS:1 COG:lin2311 KEGG:ns NR:ns ## COG: lin2311 COG0561 # Protein_GI_number: 16801375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 3 261 4 256 256 176 37.0 4e-44 MYKAVVFFDLDKTLLNDEKQVPPENVAALKALEANHVLPVIATGRNYYELDDIMAVTGVR SAIAANGGDIFLEGEHIFQSVIGEPQLTRFLNASAARNIQVAMYTSDQSALTGHNELTTD NYAQVRQTPPPIKPDFYKHEAVCMLLMFVPWTDAGDQVGQQFIKDFPEMTFYRNSHYTFD VVNRGISKGTGMNILLNQPALRDIPTYAFGDGYNDIPLLQAADTGIAMGNAYPKVAAVAD YQTDDYRSHGIPNALAHFNLI >gi|225002560|gb|ACIZ01000019.1| GENE 14 13118 - 13828 666 236 aa, chain - ## HITS:1 COG:SPy1399 KEGG:ns NR:ns ## COG: SPy1399 COG0363 # Protein_GI_number: 15675320 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Streptococcus pyogenes M1 GAS # 1 233 1 233 234 291 60.0 8e-79 MDVKVFDNDTEAGKYAFELIKQGMDNGAKVLGLATGSTPVTMYQAMVNSDVDFSNMTSVN LDEYVGMSPDNDQSYHYFMKSHLFDKKPFKETFVPNGLAKDPEEETKRYNKVIADHPIDI QVLGIGRNGHIGFNEPGSPFDAETRKVPLTQSTIDANARFFENENDVPRYAYSMGIGSIM KSKKILLLAFGENKADAVQKMIEGPVTNDVPASILQKHPDVVVILDKAAASKLSHK >gi|225002560|gb|ACIZ01000019.1| GENE 15 13936 - 14154 56 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551148|ref|ZP_04439873.1| ## NR: gi|229551148|ref|ZP_04439873.1| hypothetical protein HMPREF0539_0404 [Lactobacillus rhamnosus LMS2-1] # 30 72 1 43 43 67 97.0 4e-10 MSDSNSVRYLFHKLSKSRRCCSPSIKPCGLLFEKEKSVSSILSQEHLSAISTASVNHKAA LIRDLVYNAMAI >gi|225002560|gb|ACIZ01000019.1| GENE 16 14298 - 16115 1782 605 aa, chain + ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 13 604 2 587 589 570 51.0 1e-162 MEAKSANTPATEKKKFNLKAGMQSFGTKLSGMVLPNIGAFIAWGLITAIFLKGGWLPNAQ LAKMITPMVTYLLPLLIAFSGGSMVAGHRGGVVGAIAAMGVIVGTNVPMFIGAMVMGPLG GWCIKKWDDRVQDKIRQGFEMLVNNFSAGIIGMLLAIVGFFLMGPIISGLTNAMAAGVDW IINHGLLWLANIFIEPAKILFLNNAINQGILTPLGIQAAAEHGKSILFLLEPDPGPGLGV LLAFALFGKGAAKGSAPSAIIIHFLGGIHEIYFPYVLMKPALFLSVMAGGVTGTTLFSIF NVGLKSSPSPGSILSLLAMSPVNIGNYIGLIVGVTGATAVSFLISAFILRRDKGTGDELA ASEAKMKSMKAEAKGQDVAAAKDVMSQAKGIKQIIFACDAGMGSSAMGASILRDKVKKAG LDLSVTNTAISNLQDKPGLLVVTQEELADRAKKQTPDAAHVAVENFLNSPKYDEIIASLK AEAVGGTDETATKETPKAKQETPEDELNDIDFDKITEVDFLHHDQNIGSATMAQATFRSE LRKLNKDVKVRNVAIGEIDDKDHVLIIASKETARRVKLQFANVQVYTVDGLLNATNYDKL IEKLK >gi|225002560|gb|ACIZ01000019.1| GENE 17 16190 - 18208 1410 672 aa, chain + ## HITS:1 COG:BH3853 KEGG:ns NR:ns ## COG: BH3853 COG3711 # Protein_GI_number: 15616415 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus halodurans # 1 668 14 698 700 207 25.0 6e-53 MMSQPAGISRDELERQLGVSRRTIYRELSQLEHDIATVNLKLDKGNGSSYRIVGAAADLA SLSAALSHQRQDLTFDPSQRQSALTLMLLTTDETLTMTALADAVDVSITTIKQDLDILEP ALNEYHLKLNRQKAAGIWIEGQEGDIRRVLVGVLNAEINPYVFFRFLNDPQQDFDPVANY FIERLPQEELLAANTALSQIKALADLNDNQRKAVLLTVAINTRRLREDHHVKPQQHFDQE RLFQDQQLALQFLAEMDSTIREKVRVGDYQFLAIELSNIRGGLAGEPVDQFDLTINLEVQ DLIREVARSFPGKFSGNPQLYSSLLAHVQRTAGGDWLSGVTMTNPVLAHLQDDYSELYQA VQKAADHVFGQGAFTGDALAYLVLYFASVLDHAPAEKPVAVLLVTSDGPGTGSLIAGKLR VQVPEIRKIKIVQVSDLPEQQLEHYDLVLATMPLPGFKHQYLVITPILGREEIAEVRRLV QRATPKQVRPLNQPSLDQTVTAFESLKTMVMAADGLLQHFAVNDLNEPVTTIAAAIDAML ARLPTVVVEPPIVKEALLKRLELAPVGIPNTGLAMIHTSSRGVTTPYIGAFDLKTAIPLA AMDMGTIQLQRILLLLTPNPVPQETLTLLSAVSAKLVASPADIQLFEKGHYSQLYQVMTE VFMHEIQKIDRR >gi|225002560|gb|ACIZ01000019.1| GENE 18 18213 - 18656 414 147 aa, chain + ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 9 139 8 137 143 143 53.0 1e-34 MKGLDVKTIKLGQEAKTREEAIRQAGQLLVDNGNVEPGYIDSMIDRNRDVSVYMGNFIAI PHGTEDGMKYIKKTGISVVQYPWGVDWSDDPADENLVTVVFGIAGLNGEHLKLLSQIALY CSDVENVQKLADAQTPEEIVNLLKEVE >gi|225002560|gb|ACIZ01000019.1| GENE 19 18660 - 19814 1198 384 aa, chain + ## HITS:1 COG:SP0397 KEGG:ns NR:ns ## COG: SP0397 COG0246 # Protein_GI_number: 15900317 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 1 375 1 374 378 437 57.0 1e-122 MMEAVHFGAGNIGRGFIGETLAANGFKINFVDVNETIINALNQRGEYTITLAAPGEKKIH VDNVDGLNNAKDPEAVVKAIAQADLVTTAIGPKILPIIAPLIAQGLQARAAANNHQPLDV IACENMIGGSQSLKKSVYEHLDDAGKTFADTYVGFPNAAVDRIVPQQKHDDPLAVSVEDF KEWVVDESQMKNHDLKLKTVDYVPDLEPYIERKLFSVNTGHATTAYTGKYLGYSTIGEAI KDPKVFNQAKGALAETRSLLLAEFKNFDEKELETYQNRVLQRFQNPYISDDISRVARTPI RKLGYNERFIRPIRELKERGLDYSVLMDTVGMMFHYVEPNDAEAVKLQAMLKDQPLVDVI KEVTGLKDAALIDEVEASVKSKDR >gi|225002560|gb|ACIZ01000019.1| GENE 20 19923 - 20876 773 317 aa, chain + ## HITS:1 COG:alr0079 KEGG:ns NR:ns ## COG: alr0079 COG0657 # Protein_GI_number: 17227575 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Nostoc sp. PCC 7120 # 33 161 150 276 411 74 30.0 3e-13 MADEEAMLAKVQASWAQTAARDKARYADERVPEDVHWETEYRYEQSADPQQTLNLYYPAK RRNATMPTVIDIHGGGWFYGDRNLNRNYCRYLASQGYAVMGMGYRLLPDVDLRGQIQDIF ASLRWLSHFGPQRGFDLDHVLLTGDSAGGHLASLVACIQQSAELQELFGVSRVNFNFTLV ALVCPVAEPSKLPEAAGDMSDMAAFYLDKLSGGDQALADHLNFSQVVKGLDLPPFMLIGG QNDSFYLQSQALLKVFDANHVTYTTKLWPASAGPHLKHVFNVQHWEWPESIETNLEMLRT FDALSKQQDQAEENEFE >gi|225002560|gb|ACIZ01000019.1| GENE 21 21044 - 21769 491 241 aa, chain - ## HITS:1 COG:lin2180 KEGG:ns NR:ns ## COG: lin2180 COG1073 # Protein_GI_number: 16801245 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 2 237 77 315 319 214 42.0 2e-55 MTAPDNQRLEALWLPHPGSQKAVIIGHGYKGTGITMSNFAHMFYDLGFNVLLPDDRGHGE SDGEYISFGWLDRLDYLGWLQRILDRLGNDAQLLLFGTSMGGATVSLVAGEPSLPKQVKA VIEDCGYTDVETELAYLLKKQFHLPPLPLVPLASFINYRRLGYPLRVVNVRQALTRNRLP LLVIHGAEDVYVPTKMGRENYAASAGPKALWIVPGAAHAESYWINPAAYQAHVKRFLDIF F >gi|225002560|gb|ACIZ01000019.1| GENE 22 21773 - 21973 238 66 aa, chain - ## HITS:1 COG:no KEGG:LGG_02907 NR:ns ## KEGG: LGG_02907 # Name: ybcH # Def: alpha/beta superfamily hydrolase # Organism: L.rhamnosus # Pathway: not_defined # 1 66 1 66 309 132 100.0 4e-30 MKQSHLIGLATPLLLSAGTLATAERFYQYAFRRINYIPDARSSMQKYASSYYRHVHWVES QRHIEA >gi|225002560|gb|ACIZ01000019.1| GENE 23 22174 - 23094 987 306 aa, chain + ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 4 306 10 316 317 317 53.0 2e-86 MHELKLFSLNGNRPLAEKIAAEVGLPLSPARVNHFADGEVQIELPESVRGADVYVIQSVS DPVNENFMELMIMVDALRRASAHHINVVISYYGYARADRKARSREPITAKLVANMLEMDG VDRIVAVELHADQIQGFFDIPVDHLKAHRLIGDYFRKLNLGDNVVVIAPDHSGTKQARAL AEELHTPIAIVDKRDQEHIGVIGNVEGMHAIVIDDLIDTGDRIVDSYKALSAAGALDVYA AATHGVFSRGAVDRIKHLGLKKVVITDTIQLDPKHQFEGLDQISVGPMLGKAIKLINSNQ SIHVLF >gi|225002560|gb|ACIZ01000019.1| GENE 24 23622 - 23870 322 82 aa, chain + ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 82 1 82 82 77 63.0 8e-15 MHFLWALIVGAIIGAIAGAITSKGKSMGWFANIIAGLVGSAIGEGLLGHWGPQLAGMALI PSIIGAIIVVAVVSFFVGRSKD >gi|225002560|gb|ACIZ01000019.1| GENE 25 23886 - 24026 212 46 aa, chain + ## HITS:1 COG:no KEGG:LSEI_2879 NR:ns ## KEGG: LSEI_2879 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 46 1 46 46 71 100.0 1e-11 MDALKAAFKFMVASTLIVGGVLVAGTVFAAKGIDNAGDKLQEKLHD >gi|225002560|gb|ACIZ01000019.1| GENE 26 24543 - 24884 229 113 aa, chain - ## HITS:1 COG:no KEGG:LSEI_2878 NR:ns ## KEGG: LSEI_2878 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 113 1 113 113 174 98.0 7e-43 MPLVTSISQLNEPITLVSYTMGNVNGVPVSNVRKEHFTTWALVLSQYLSEVRASVGTKLE DTVTFVVRYDQPETILNSWRIEWQEKQYDIVKLTPDTAKKQWTTIIGKPVANK >gi|225002560|gb|ACIZ01000019.1| GENE 27 24868 - 25158 331 96 aa, chain - ## HITS:1 COG:no KEGG:LGG_02902 NR:ns ## KEGG: LGG_02902 # Name: not_defined # Def: phage-related head-to-tail joining # Organism: L.rhamnosus # Pathway: not_defined # 1 95 1 95 96 177 100.0 1e-43 MSVTTEDLKKALRISHSEDDAMLSAYLLTAKQFVISAVDQTLTDENFGDDPRFDFAVSLL AQHWYINRGVDGATYVPDSVVSMIQQLRGVDYATGN >gi|225002560|gb|ACIZ01000019.1| GENE 28 25220 - 26761 1300 513 aa, chain - ## HITS:1 COG:L67524 KEGG:ns NR:ns ## COG: L67524 COG3740 # Protein_GI_number: 15672453 # Func_class: R General function prediction only # Function: Phage head maturation protease # Organism: Lactococcus lactis # 37 179 27 168 195 130 46.0 6e-30 MNQDDVEKRLNPNAGLTAADATKTDDDQDKAKTGPKKLSGYAVVFNSPSKDLGGFKEVVD PHAFDDVDLSDVYMVSNHDFSQVLASTKAGTLTLKVDDKGLRFEATLPDTTTANDAYNNV QAGNLSAMSFTFNAAPDGDTFTKDDSGQVIRTIKQVKSLFDVSLVAIPAYDETNVQVDKR SYTEWLKDHVEDPEQQLPPTEKRKGVNHMTEKTIIDKEEHTESRAYEDYIRSMGEQRDGL TTTTAGAVVPKEVINDVWDLKQSDYDLAKYVTVKQVGTPVGTYPIALTNNGVLATKAELA DVADVDANMFKGVDYKVATRAGKIYLSNELVEDSEVDIVAEVKNQLKKLVQNTDNSNIIS VLTGKTGTNDNFKHITGTGLDDLKQTFNVELDPALSLSVIVNQDAFNYLDTLKDSEGRYL LQPSITAPSGKQLFGAPVIVIANKVLPTDKAGTYRVIVGDFAQAIFLAQKNEVNTQWERF DSYSQGLAVVIRNDYEVVDPDAARIVDITPVKA >gi|225002560|gb|ACIZ01000019.1| GENE 29 26748 - 27932 688 394 aa, chain - ## HITS:1 COG:L66478 KEGG:ns NR:ns ## COG: L66478 COG4695 # Protein_GI_number: 15672452 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 14 309 16 311 359 118 31.0 2e-26 MSFFTNSAPKQRDDNSDPFLDALVSMTSNDSGLYVGIGALRNSDVFTAVRVIAGDLATNP IEYSDKRISVLLNKAPNDHMTAWGFKFALATNMLLNGNSFARVTKNPSGQVTGFELVPNS QMVVKQDDTTGIISYEYTPDSGRSQRLNASEVLHFKCFTQDGYKGLSPLYSLRDEVGVQK SGHALLKGFFNSGVQGTGILKVNKTQLDTKAKENIRNKFEAANSGDNALKTIILDNDMDY KQLEVNTDVLNLVNSSDWTTKQISKAFGLPLDRLGIESEHSNAVQSNVMYLQNTLIQYFT CFTSEMDAKLSTGDNRFSFNTDKLFSADPATMQELAVKGLQGGVLTTNEARAKLNLPPIA GGDDIMASLNYTPLSNLTNYQNTRQRSDPENESR >gi|225002560|gb|ACIZ01000019.1| GENE 30 27937 - 28116 262 59 aa, chain - ## HITS:1 COG:no KEGG:LC705_00694 NR:ns ## KEGG: LC705_00694 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 59 1 59 59 71 100.0 8e-12 MTFIRAMTLVFNVQTVLLLLGLICMVVGIWWLFGFGVGMIAAGTALISIAVIINFNKGR >gi|225002560|gb|ACIZ01000019.1| GENE 31 28082 - 29785 1363 567 aa, chain - ## HITS:1 COG:L64491 KEGG:ns NR:ns ## COG: L64491 COG4626 # Protein_GI_number: 15672451 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Lactococcus lactis # 4 541 16 563 604 264 32.0 3e-70 MNYATKYTDKVLSGEIVAGKKIKQAARRYRRDLRASKRKKNPWPYYFDEDFANKAVEFIE LMPARDGSPLKLELFQKWLISELFGWRDKATGNRRYDRAYISMARKNGKSFLMADLGALY LLMENKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPS NSRAVPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPD LNGPMYKEYKFVSKILTGREQADRYFIAIFEQDSKDEAFAPETWEKSNPLLANAERAKTM RPSLQADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKATIEPPDTRDKDVYIG LDLSKSSDLTSISWLVPEDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITK LESGMIDYDEVLRFILDLIERNQWNVRAICYDPFAMGYLIPEFEKRNLPLLEVRQGVRTL SIPTTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKAHNATKIDPVAALMN AYTIAMDQNKESEVADNDFYSSDDFSF >gi|225002560|gb|ACIZ01000019.1| GENE 32 29782 - 30252 367 156 aa, chain - ## HITS:1 COG:CAC1896 KEGG:ns NR:ns ## COG: CAC1896 COG3747 # Protein_GI_number: 15895170 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Clostridium acetobutylicum # 14 148 19 148 151 58 29.0 3e-09 MGAPLKSVTNLSAHLSKKQLADRVASEKALFTYKELQVQPPTWLDDYAVTEWHRIVPLLK KDIPVSELDAALIASHCQAYSDIQKAAKLVQEQGMMVETTDSVKANPAVKMKLDATNQMM RIDDVLGLSVYSRAKLALKSETKKKPDDPFAELVSS >gi|225002560|gb|ACIZ01000019.1| GENE 33 30251 - 30481 86 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCNVLSEFVFVYTYYNYNTLIIPMFYDFRYSSKRKEADRSFALKFEGGGRSVGGSHPALC YLPCGLSVMTSLAQAL >gi|225002560|gb|ACIZ01000019.1| GENE 34 30377 - 30751 67 124 aa, chain - ## HITS:1 COG:no KEGG:LGG_02896 NR:ns ## KEGG: LGG_02896 # Name: sb56 # Def: phage-related HNH endonuclease # Organism: L.rhamnosus # Pathway: not_defined # 1 124 18 141 141 220 99.0 1e-56 MIPFNQRFCEEHKQDKSKQATNQERMQYEEKELRFYKSTTWTKLSKSFRLRNPTCASCLK RGIIRQAVLVDHIEPIKTAYGWQHRLDESNLQSLCQTCHNAKTAREVAQRRMRSPDRSTP ALKF >gi|225002560|gb|ACIZ01000019.1| GENE 35 31026 - 31175 64 49 aa, chain - ## HITS:1 COG:no KEGG:LC705_01069 NR:ns ## KEGG: LC705_01069 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 40 1 40 113 72 87.0 6e-12 MTKTAYRKAALVDVKHDRDKWTELGVLVEEHYLVRSMTPQRLVHHCQAT >gi|225002560|gb|ACIZ01000019.1| GENE 36 31538 - 32929 391 463 aa, chain - ## HITS:1 COG:SSO0140 KEGG:ns NR:ns ## COG: SSO0140 COG3378 # Protein_GI_number: 15897095 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Sulfolobus solfataricus # 186 435 177 430 532 105 29.0 2e-22 MVKAMPEDAKKLASNVVQMKKNEPEWIFYDENGNRKVSATKLGQEIIKENPMLRLDTLSQ GARFDKATGTWRLDKLSEFLDTIITEKLESVGKWSQGKLSEVKHYVLIKVYHPEMIESPF EHADPNLITFANGTYNLVTDTLQPHRPEDYILQNHPYDLKMKSGKDLKTVDWLAHLTGDP ISANFLMEFIGYCFYHRYSPFQALIILQGTGQNGKTTFIEFVKQILDKRNVSNVALQDLA NKDNRFTGSQLYQKEVNMFADLDDSFLKTTGQIKALTGDDTIFAEFKGKDGFSFMNFAKL IFSANKLPKFSDFTSGFIRRLYVVPFPKKIDNNFKKEFDLNQIYDEIPAFSYQCLRAFKR AIDRDSLSKSPSMIAAKEQWLKDSDNIARFIEDRCRIELDTNGGDSSRNIYKAYQDYCWE ENIKPFSQPEFTRRLEAQGIPRKKVQFNNTRIWRYLHLFVEDS >gi|225002560|gb|ACIZ01000019.1| GENE 37 32922 - 33749 706 275 aa, chain - ## HITS:1 COG:no KEGG:LC705_01067 NR:ns ## KEGG: LC705_01067 # Name: not_defined # Def: phage-related DNA replication protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 275 2 276 276 524 92.0 1e-147 MVDVLKVALGYQQHGFAVYPLAPGTRTPLKGSHGYKDATKDPEQAKKWWGEHPNYNIGLG LDGVLVFDIDVGHKSGTNGSDTLAKLCADGRAGQISSSYAEISPNGGLHIFFTYPKELKL TSRSDLFSKNGEKTGLDYVATGVPVFPSIRENGIYQPLRGRKITKLAPVPQWLLDEIQRV SHPNQVFSGSTVCRGKRWTGKLLDEMVNGASTGNRNDFLTKIAGKMFFTGAEPQTVYNLL FATNDNYLDTPLAEAEVNKIFKSVLKAEERRRAVG >gi|225002560|gb|ACIZ01000019.1| GENE 38 33733 - 33918 220 61 aa, chain - ## HITS:1 COG:no KEGG:LC705_00687 NR:ns ## KEGG: LC705_00687 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 61 2 62 62 88 96.0 7e-17 MKKDYYTTAQALLSDTSAMVNILRHQINDEQQSALADTVADMIIDARRLLMEGDAADGRR A >gi|225002560|gb|ACIZ01000019.1| GENE 39 33918 - 34190 298 90 aa, chain - ## HITS:1 COG:no KEGG:LC705_00686 NR:ns ## KEGG: LC705_00686 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 90 1 90 90 154 97.0 7e-37 MKNVSNSTKVPDLDMASLNLSTAKGLLEALRDQLDSIEELVFYYRKNHTQAEALRLAYEA NRSFYTWMALLRPIQEYVDSSLATIDEVNK >gi|225002560|gb|ACIZ01000019.1| GENE 40 34238 - 34429 169 63 aa, chain - ## HITS:1 COG:no KEGG:LCABL_30840 NR:ns ## KEGG: LCABL_30840 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 63 1 63 63 97 95.0 2e-19 MPKMINSKYGWTWSQFVKADADCDRYWAAKKAEKRSLIEATKKPPRVAPQGEKKTSEKIY INF >gi|225002560|gb|ACIZ01000019.1| GENE 41 34413 - 34547 128 44 aa, chain - ## HITS:1 COG:no KEGG:LC705_00684 NR:ns ## KEGG: LC705_00684 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 43 15 57 59 74 86.0 1e-12 MTSLITWIFIHPTVIPVMLMVFMNGGVLGAFLQFRKDDGHAEDD >gi|225002560|gb|ACIZ01000019.1| GENE 42 34540 - 34935 355 131 aa, chain - ## HITS:1 COG:no KEGG:LC705_00683 NR:ns ## KEGG: LC705_00683 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 131 1 131 131 248 98.0 5e-65 MKVVYPSIVEQFYEGLKSEGVTVGKDEVYRTMVETNLIDENGVPTQYALDNGFIKCVDNE PESLAEFKELYPNLKKYSDDHFMKTDEGWCIDTFVARSESMLLLNDPATSETDKLNARIV LNYLKEDGADD >gi|225002560|gb|ACIZ01000019.1| GENE 43 35001 - 35276 311 91 aa, chain - ## HITS:1 COG:no KEGG:LGG_02887 NR:ns ## KEGG: LGG_02887 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 91 1 91 91 157 94.0 1e-37 MALMKAQITLPADFDQILQERIHREVVRVMNETKQQPMQKKLNIGQAAVYAGVARNTLLS WTRKDLPMQVVGGVKRINTADIDDYMNNHGK >gi|225002560|gb|ACIZ01000019.1| GENE 44 35301 - 35513 159 70 aa, chain - ## HITS:1 COG:SP1131 KEGG:ns NR:ns ## COG: SP1131 COG1476 # Protein_GI_number: 15900997 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 3 68 6 71 117 61 48.0 4e-10 MQRIKGYRVMLNLSQQDVAKELGISRQSYWSKENGRTSFNDKEKTKIRDLFRKTGIPVTI DSLFFDGKVD >gi|225002560|gb|ACIZ01000019.1| GENE 45 36048 - 36239 114 63 aa, chain + ## HITS:1 COG:no KEGG:LGG_02886 NR:ns ## KEGG: LGG_02886 # Name: not_defined # Def: transcriptional regulator # Organism: L.rhamnosus # Pathway: not_defined # 1 63 141 203 203 114 100.0 7e-25 MKPERQNVAIMKFSSIVAGIIRARTHDYSADQIEEMKTDFAKELSDIIDISQKSPTQKIQ DYE >gi|225002560|gb|ACIZ01000019.1| GENE 46 36357 - 37514 513 385 aa, chain + ## HITS:1 COG:SP1129 KEGG:ns NR:ns ## COG: SP1129 COG0582 # Protein_GI_number: 15900995 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pneumoniae TIGR4 # 3 385 2 386 387 153 28.0 6e-37 MASIKKYATKDGKEFWRVQVFAGNDLQTGHKKYKVRRGFKTKKEATVAAARLELAISNGD LEEEKPKPVFFRDVYEEWYGNYINTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQ KAVKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMSKNPAKAIVLPHHDDLAGDKPENFWT KEQMNHFFACIDQENHFDVFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQG DKGHQIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFIQLGINTMQPNQLLFTNTKN GYQSLNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTIT LGVYAHVSAKQESEATAALAKYMQN >gi|225002560|gb|ACIZ01000019.1| GENE 47 37861 - 38790 898 309 aa, chain + ## HITS:1 COG:no KEGG:LC705_02868 NR:ns ## KEGG: LC705_02868 # Name: not_defined # Def: PEP phosphonomutase-like protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 309 1 309 309 591 100.0 1e-167 MVKRLLSASTSEVMQFNGQQLKESIKASEGRIIVSENIVTQENLDSITTAEIAAAFGADM ILCNRLDVNDPKIFGLYPGERHLAAAPKHDGKASIDRLKKLVGRPVGINLEPIGDHPNMM EQQIAILPGCTASEAVIKKAEAMGFQFMVLTGNPGTGVTNEAIIHSITVAKQYFSGLIIA GKMHASGVDERIMTAETAKDFIEAGADVILAPAVGSVPGFDEADLTEVVKVVHQLGGLVM SAIGTSQEGSGSRVLQAMAIRNKICGVDMQHVGDSAWGFESPVNNLYAVSKAIRGERHTI QRMARSINR >gi|225002560|gb|ACIZ01000019.1| GENE 48 38969 - 39649 412 226 aa, chain + ## HITS:1 COG:lin0511 KEGG:ns NR:ns ## COG: lin0511 COG0518 # Protein_GI_number: 16799586 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Listeria innocua # 1 224 1 223 226 176 40.0 4e-44 MRINVLQHTPNEGPGAIKTWADFYGHELYVYHPYQFDGTLPTASETDLLVVLGGPMSPND DIDWIKAERRLIKTLLSQHKPIFGACYGAQQIVKTMGYQVSKAPAKEVGWAPVHLQTHMI PGLPDSLLALHWHEEMFQVPDEATLLFSNELLKNQGYLLGDHVIGLQFHLEPQADDVREI AINDAAYALDDNALHQTAAEIMRVDPPEANRLAIFRMLDFITTPTK >gi|225002560|gb|ACIZ01000019.1| GENE 49 39822 - 40220 432 132 aa, chain + ## HITS:1 COG:no KEGG:LGG_02882 NR:ns ## KEGG: LGG_02882 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 132 1 132 132 251 100.0 8e-66 MHEDLGSYAYVQRVYNANMRLAAYKLPRTAENGTVTLIADELINLTMQIENGRVKKITII ATNPRSSVYMQVFEGFEFGFNAVSTWIQNYEETTRTHGPSQGVVKGILADYNTTKDNVLT VSLTRVSGKAPE >gi|225002560|gb|ACIZ01000019.1| GENE 50 40529 - 41383 841 284 aa, chain + ## HITS:1 COG:SSO1560 KEGG:ns NR:ns ## COG: SSO1560 COG2084 # Protein_GI_number: 15898379 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Sulfolobus solfataricus # 1 208 1 208 289 91 30.0 2e-18 MKITFIGVGDMGSQIVPHLAQAGYDVVIWDKEPAKMTALTGDHVRAATSLEDAVTASKII ITSVMSADVPALHIGTVDDPGIVNYLQPGSTLIVTSTLDPRKITAIQSAMPAHATLLDVP MIGGVKYAREASLVLIAAGDKQVVETVAPVLETFGKIRYVGDQGNGAKLKLITNVAIMAA EAGIRETLDLADAYGIDYETTLELLQMGPLKPVVLRALDESNPRPLKDSVADEVELDNAT KEFVDLPIATAAMKRLQKAVDSVDGEAKFIDITNKKTALPKASE >gi|225002560|gb|ACIZ01000019.1| GENE 51 41615 - 42007 182 130 aa, chain - ## HITS:1 COG:no KEGG:LCABL_00180 NR:ns ## KEGG: LCABL_00180 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 130 1 130 131 95 42.0 7e-19 MLNTKALKLYLFSSAMGVFMWLRHSLPFQSIGVAVSLNLGYIFFLFGGIFQKPELVAASS FLIIYGNLGFVKQVNGDTGYSFSKVASLLIIILCLITFYLLKTNTLSFLIPLVSLIINGA LVSIKTHDQN >gi|225002560|gb|ACIZ01000019.1| GENE 52 41949 - 42107 88 52 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551186|ref|ZP_04439911.1| ## NR: gi|229551186|ref|ZP_04439911.1| hypothetical protein HMPREF0539_0442 [Lactobacillus rhamnosus LMS2-1] # 1 52 1 52 52 80 100.0 4e-14 MNTPIAEENKYSFRAFVLSKGFLSYHFKVSFEKIEGLSAFINVNSLASFTIA >gi|225002560|gb|ACIZ01000019.1| GENE 53 42196 - 43173 919 325 aa, chain - ## HITS:1 COG:CAC2945 KEGG:ns NR:ns ## COG: CAC2945 COG1052 # Protein_GI_number: 15896198 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Clostridium acetobutylicum # 2 320 1 323 324 302 48.0 6e-82 MIKIVLLDGYALNRDLDWSALKKLGECHFYDRTPVNDTQKILARIGDAEIVLTHKTPLTK AIIGKAPNLRYIGVMGDGYDVIDVEAASARGIPVTNVPIYATDAVAQFTFALILEITSHV GLHNRLVHEGRWEASPDFTFWAKKLTLLAGKTLGLVGYGRIAQKVASIAHAFSMKVVFYD RRPKTHDNQMSQQVSLKELLTTADIISLHVRQAPETLNLIRRETIEQMRPGVIIINTARG KLINENDLALALNQGKIAAAGLDVSQQEPIQPDNPLLTAKNCYITPHIAWAPYETREKLL ALTIANLTAFLKGTPQNVVNVQAFH >gi|225002560|gb|ACIZ01000019.1| GENE 54 43423 - 43938 339 171 aa, chain + ## HITS:1 COG:no KEGG:LC705_02863 NR:ns ## KEGG: LC705_02863 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 171 12 182 182 342 100.0 3e-93 MIGLSVLLTVSSIAMSLYGPKNKRDPGADAEGFSIKLPRHFEITKSGVGPFLIERIPQKR QTTTDANTLLYHVQAAGWNRRMLVVKSKEDHNYDFRKSGINGKGYALIDLKTGEHSWYRT LKGMQKKHPQTHQIQVQPLDRYHWRASAQSQKTKDDPVITSRVFTNMVTGH >gi|225002560|gb|ACIZ01000019.1| GENE 55 44122 - 44811 504 229 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 3 220 2 222 226 198 49 6e-50 MTNILIVEDDPMVQFIHRNYLEKLGTFETIYSSETIAEAKKLLASRSIQLILLDIRLKDG NGIDFLTELRRTKQMVDVILITAANEVEIVNDALHLGVIDYLIKPFTMERFEKSIQRFKT KNQALVSQQLNQSQLDAYLEPHTHASSIRDLDKGLSKATLKMIQAAIQQLPSSFTVAQLT AETGLSHVSVRKYLNFLEDHRFLKSDTIYRKTGRPFKTYQVIAPLPMRS >gi|225002560|gb|ACIZ01000019.1| GENE 56 44789 - 46333 1114 514 aa, chain - ## HITS:1 COG:SPy1107 KEGG:ns NR:ns ## COG: SPy1107 COG3290 # Protein_GI_number: 15675090 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Streptococcus pyogenes M1 GAS # 4 481 3 481 513 341 40.0 2e-93 MKIKGWRLWSWLSLIFTSTLLVTVFTVYGFTLLENRQQFETRESQLLLSVGRQLAQEPRV ISALKANKADPATRAYANSVAKNFKLDFVVIMNMQAIRLTHPDPKQINRHFRGGDEVRAL QGHAYVSVQRGTLGRSLRGFVPVYQNHKQIGVVALGIKVTALQMLIHNSQNGFRLALLVG IVMGILIAFLVAYYIKRQLHDLEPKEIARLLEERNAMLEETKDPVIVVDLNQTIVLVNRA ASKLQRHLIHEQAFIGRPLTTLIAHPERIKLTVKTEQFYQQDGQDYLFSAAPIIVKKQKI GYVIFLRNATEAIFVADQLANTTAYANALQSQSHEFMNKLHVIYGLVSIKQYDELAIYLQ DLLKPEQEFANRLALLVKNPLVAGFMIGEREKFAERKTTLNFEIVPELPANPNVSETKSL LTLSRYLHFGLLQQDLPATILIQLDYAQDQLTITYHLAQPLSRNALLSVIHQDYFQQLLS DLHGTATLSPAEPLVLTLVVDYHEEAKNDQHSHR >gi|225002560|gb|ACIZ01000019.1| GENE 57 46490 - 47815 1153 441 aa, chain + ## HITS:1 COG:SPy1109 KEGG:ns NR:ns ## COG: SPy1109 COG3493 # Protein_GI_number: 15675091 # Func_class: C Energy production and conversion # Function: Na+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 8 441 9 442 443 600 80.0 1e-171 MASKTGTPSAPESSQSKWMAIRIGSVPLPVYLVMAMVIILAGAMQQLPVNMLGGFAVILT MGWLLGTIGANIPVVKNFGGPAILSLLVPSILVFYNALNPNVLKATDMLMKQANFLYFYI ACLVCGSILGMNRKILIQGLMRMIIPMMLGMILAMGVGTLVGVLLGLEWKHTLFFIVTPV LAGGIGEGILPLSLGYSTITGTTSGALVAQLIPATIIGNFFAIMCSGLLNRLGEKRPELS GQGQLVRLNGAEDDLADALKDDTGPLDLKMMGAGVLTACTLFILGMLLQSVTGFPGPVLM IVAAAILKYVNVIPGETQRGAKQLYKFISSNFTFPLMAGLGLLYIPLKDVVGMLSWQYFI IVISVVLTVVSTGFFVARFLNMNPVETAIVTACQSGMGGTGDVAILSTANRMNLMPFAQV ATRLGGAITVISMTAILRMIF >gi|225002560|gb|ACIZ01000019.1| GENE 58 47852 - 49030 1238 392 aa, chain + ## HITS:1 COG:SPy1110 KEGG:ns NR:ns ## COG: SPy1110 COG0281 # Protein_GI_number: 15675092 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Streptococcus pyogenes M1 GAS # 3 383 2 382 388 524 74.0 1e-148 MAKKDFNQLALDQAKINGGKLSVEPKVPIETRDDLSIAYTPGVGAVSSAIAKDQSLVYDL TTKKNTVAVVSDGSAVLGLGNIGAEAAMPVMEGKAALFKRFAKVDAVPIVLDTQDTEAII AAVKAIAPTFGGINLEDISAPRCFEIETRLIDELNIPVFHDDQHGTAIVVLAALYNALKV ADKKIEDIRVVVNGGGSAGLSVARRFLAAGVKHIIVVDKVGILAEKNADQLPPHHAAIAK ITNRENRTGTLEDALKGADVFIGVSAPHILNPAWIKTMAPKPIIFAMANPEPEIFPDEAL AAGAYIVGTGRSDFANQINNVLAFPGIFRGALDARARKITIDMQIAAAKGIASLIPDDEL STTNIIANAFDGDVAEVVAESVRDAAKATAKA >gi|225002560|gb|ACIZ01000019.1| GENE 59 49251 - 49499 142 82 aa, chain + ## HITS:1 COG:no KEGG:LC705_02858 NR:ns ## KEGG: LC705_02858 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 82 1 82 82 135 100.0 6e-31 MALSDDHKVKSQDGFAHSEMKRKRRAVFGPLGLLFMFEFINLYQLFEDGELFTFKGLRIL FALFILVFLVVIFSKNLKKPAR >gi|225002560|gb|ACIZ01000019.1| GENE 60 49593 - 49883 112 96 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551194|ref|ZP_04439919.1| ## NR: gi|229551194|ref|ZP_04439919.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 96 1 96 96 170 100.0 3e-41 MNHLIAVFLIVAVLSIGPLICFVVIHRKNKRLKALVLGIQSLQEEKMFTQRALDNVLCGI VSEKVTVKHDGSLDLSNFMSFNSLEKLYIVLENNNP >gi|225002560|gb|ACIZ01000019.1| GENE 61 50298 - 51692 1151 464 aa, chain + ## HITS:1 COG:CAC0274 KEGG:ns NR:ns ## COG: CAC0274 COG1027 # Protein_GI_number: 15893566 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Clostridium acetobutylicum # 2 463 4 465 465 400 46.0 1e-111 MRIEEDCIGKLAVDEDVLYGIHTTRALANFPISHERTDALLFKSLIIIKKAAAQVNAAGG TLSAAKAKAIVAACNSLLMGEHRDALVAPAIQGSAGTSVNMNVNEVIANLASQHTAEPVH PNDDVNQSQSTNDTYPTAGKMAALQALPPLQQALTFLIKSLLVKADEFADVVKVGRTQLQ DAVPTTFGHSFHAYASLFQRDQKRLTRAAEDLRQVNLGGTAIGTGLNATPYYRAHIVSQV NRLIDLKLESADDLIDATQNCDVLVAFSGAMKGLATDLSKFANDLRLLSSGPQAGLNELH LPAKQAGSSIMPGKVNPVIPEVVNQIAFQVIGQDLTISMAAEAGQLELNAFEPIIFRDLL QGERYLARGIDTLTTNCVTGLTVNEAQSDENVQHSAISATILSPYLGYEATTKLVKTSLK THIAIPELLRRQHQLPDELIKRLFSPAVMTNQEPIPKAAAVGKN >gi|225002560|gb|ACIZ01000019.1| GENE 62 51904 - 53013 810 369 aa, chain - ## HITS:1 COG:HI1698 KEGG:ns NR:ns ## COG: HI1698 COG0438 # Protein_GI_number: 16273585 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Haemophilus influenzae # 14 358 16 353 353 108 26.0 2e-23 MKVMIVLENIVMDGVKRASTVLGNDLVKHYDVSFYTLADAPAYFELDAPLLIAPRPTDPK LLNFFGSDPYTHYHDQIADLITTIRDQHFQTVILPAGLTTSFAPLIKRALPDVNLIGWMH NNYATYMEDYYVQMQAEFEGGLQAVDTLVTLTESDLNSYKRFNPRTVKIYNPLTLVPTGE ADLNAHRIAFTGRIAIAHKGIDFLLEAAASLPDDWKIAIAGAGTDEDMKNFYDLIDYFNV SDKLIYQGPLKDKALRDHYRAASIFVSTSRWEGMPLVIGEAMASGLPVVAMENTGSREYL GNNDYGLLTKAQDVPDFVANLKKMINQTDLRQHYAHQSLERASHFSPENIVSQWMPIIEH QPTHVSIAG >gi|225002560|gb|ACIZ01000019.1| GENE 63 53559 - 55724 853 721 aa, chain - ## HITS:1 COG:lin0469 KEGG:ns NR:ns ## COG: lin0469 COG1305 # Protein_GI_number: 16799545 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Listeria innocua # 1 687 1 694 721 238 27.0 5e-62 MPKWLQRLLAVLLSWWLLALFLEPFATINPIAHPRALIVYILMMSLIDFLAVLLPRQWPW WLLLGCGTTIGGLWGVLPLKQPFGVSWFTAYLHTFTSATGKFVQAGGVDVPTVLSMTLVI TLVAFLLLLTVVVRFYPGAIAIVLSYLVAVHIFNGSELTIQFIQLALVTGLMAMLHLYAD HWRPFLLGCVFISGLTLGLAWLSSATPLNDQLANVSIPFRDRLNQRGFYAGIETYINGPG RTGFTENSRVLGGPVYDDPTPVFTATSAKASYYRVAVDAEYTGTGWQAGADQNQSMPLDG ATMRDSAATIDYGPATSTALTFNGGKTYLPLPYGQLTFTGGQPDPTTDFLLNPETRRMQT TDQARFQRLDIQVQPKQISAAQLAAATSSRQKVASRYLQLPRTLPKRIRTLAKRITAKAT TPYEKVLAVQNYLKSDPRFTYSKTDARRTPPTRDYVDYFLFDSPIGYCDNFSSAMVVLCR SIGLPARWAKGFNTGTLLGGSGNQKRYVIRNSNAHSWPEVYFDNLGWLPFEPTPGFSDPA TPDENVSPPSPSSSGTESVQPSSTSNSSSSSSRVSASTVSKQTKRQSRPSLNRLSWLKKS LFIILLALLLISVWQLPALVMLILGIGLGSTNFSARYRILLRALRWVKKRPVNQSLDDYA QAIDKRLGQQAYMFNLTKAYEETVFGNLPVNTAILRPHWKALTKQLVHDRYWWQRSKKHK S >gi|225002560|gb|ACIZ01000019.1| GENE 64 55717 - 56709 463 330 aa, chain - ## HITS:1 COG:no KEGG:LC705_02854 NR:ns ## KEGG: LC705_02854 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 330 1 330 330 611 100.0 1e-174 MHWRNVFLNSALVAIFGCLICFGMAFNSPTSWFVSEFVFVLLLLLVLPLLLPLRRRLKFT ADNPTLIANRPARRFFTLTHGKWLPNLILLDAAKTSTWHLPSGQRTARITLQLPRGVYRQ LPFSVTVTDWFGWFRKTLPLQLTTPLTVGPTRQPEAAARMADHFVQKMAASEAGLPSDRI KNFRDYFPGDNIQQIAWKISAHADSLIVHDDEHESQTAWTLLLIISPSLSVEAGLSLFAS LMDTGIFSGDGFLLDQRLTRVFRGQQDALLAGFEPKGSANVEWLHDLSAPGHQRAYLILA ANTATAVPFQQVLAPAVTTVATLSGGGDHA >gi|225002560|gb|ACIZ01000019.1| GENE 65 56714 - 57649 608 311 aa, chain - ## HITS:1 COG:XF1813 KEGG:ns NR:ns ## COG: XF1813 COG0714 # Protein_GI_number: 15838411 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Xylella fastidiosa 9a5c # 9 305 17 313 317 286 51.0 4e-77 MEISEAQATFNAARKQVEQVVVGKPMPILLAFTALLAGGHVLFEDIPGVGKTTLVQTIAK TLDIPFSRIQFTPDMLPSDVLGTSIFNRATNAFEFQRGPIFTSVLLADEINRATPRTQAA LLEAMGEGRVTVDGRTYPLPPDFFVMATENPTDYAGTYPLPEAQLDRFMLRLSLGYPDAA AEKSLLVSPDRQTMIANLKPVLDAASLAASKQIVPTITVTDAIADYVLKLVQATRADQRI RLGISPRGGIALVSAAKAFALLNGRSFVKPSDIQHLVIPVFGHRLILKDPTVKSADLLTE ILQHTAAPIRR >gi|225002560|gb|ACIZ01000019.1| GENE 66 57874 - 58497 596 207 aa, chain + ## HITS:1 COG:no KEGG:LC705_02852 NR:ns ## KEGG: LC705_02852 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 207 1 207 207 354 100.0 1e-96 MKKRLTYHLDIIGHYLLVGWLLFIAITIMVSLLTYIVMDANPTFIHQIVTGLSDKFAEPK DNLHAFWMILLNNERVALGLMLISMIPIPFLYWLSYVVTCASVGLVMGVYAAKMGLSGAL AAFALGILPHGILEMSALIIGVTLAAQVNRALRHSIKRFFSDAHYEKSPLDVKAIALQYV CIVVPMIAVAALIEGFVTPVLLRLIVH >gi|225002560|gb|ACIZ01000019.1| GENE 67 58674 - 59222 934 182 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|199599470|ref|ZP_03212862.1| Acetyltransferase, including N-acetylase of ribosomal protein [Lactobacillus rhamnosus HN001] # 1 182 1 182 182 364 97 1e-100 MFSYLIDYDLKLALPRPEIDGPLLFEQIETSRDSLAAFLPWVATTLTADDEINFLAATLK SFGEQRALHLVIHQADAPVGIISLNTIDHTLHHKADIGYWLTSSARGKGIMHKSVEAMAD IAFHDYDLNKLTLNAAVTNDASNHVAEKAGFHLDGILRQEDPHHNGDFLDVNTYSLLRSE WS >gi|225002560|gb|ACIZ01000019.1| GENE 68 59429 - 60889 1305 486 aa, chain + ## HITS:1 COG:lin0840_1 KEGG:ns NR:ns ## COG: lin0840_1 COG0834 # Protein_GI_number: 16799914 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 9 275 13 268 268 258 51.0 1e-68 MKRVWKWCVAGVAALILTLSMAMPVSTHAAKKTYVIGTDVTYAPFEFADKHNQYVGIDID LMQAIAKAEGFRVDIKPLGFNAAVQALEAHQIDGVIAGMQITPERKQKFAMSDPYYKTAV AMAVAKNSGVNQLKDLRGKRVALKTGTAAADFAMSLKSKYGFSTVTFDDSNNMYQDVITG NSVACFDDKPVLQYAIATGLKLKLAGPESKASYYGFATQKGRSDELDQKFNAGLKKVKAD GTYAKIVAKYLGNGTQAAQKQTSAKTQDTDRSFLGLLRENWGTLMNGLRETMVVTIVAIF FATAVGILVGLLGVLPNRFARGVATTFIYIFRGLPLLVLALFIYTGVPSLIGSKIPAFVA GIITLTLNEGAYTAAFVKGGIQAVDVGQMEAARSLGLPFGKAMRKVILPQGIKIMIPSFI NQFIITLKDTSILSIIGILELTQTGKIIIARNMEGFKIWTMVALIYLIIITVLTWLSNWV QRRMEV >gi|225002560|gb|ACIZ01000019.1| GENE 69 61172 - 62626 1331 484 aa, chain + ## HITS:1 COG:lin0840_1 KEGG:ns NR:ns ## COG: lin0840_1 COG0834 # Protein_GI_number: 16799914 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 4 262 6 265 268 275 55.0 2e-73 MKRKWLLSLLVALPLMLGALIPGKTVAAAQKTYTIGTDVTFAPFEFANQDNKYVGIDLDL IKAIAKEEGFKVEIKPLGFNAAVQALEAKQIDGVIAGMSITPERKQKFLMSDPYYKSGVV MAVAKKSKIKSLKDLRGKRVAIKTGTDSADYANSIKQKYGFTTVTFDDSNNMYQDVITGN SAACFEDQPVMQYGINNGMALKLVGKPAREGSYGFAASKNNQALISKFNTGLKKLRANGQ YDKIIEHYLGNGSAESQKTAAGNSQTTDRSFIGLLKANWSTLMDGLRETMVLTIVAIFFA TLVGILIGFLGVIPNKLCQGIATTFIYIFRGLPLMVLALFIYTGVPSLIGSKVPAFIAGI VTLTLNEGAYTAAFVKGGIQAVDPGQMEAARSLGLPFGKAMRKVILPQGIKIMIPSFINQ FIITLKDTSILSIIGLLELTQTGKIIIARNMEGFKIWTMVALIYLIIITLLTWLSNWVQK KVKA >gi|225002560|gb|ACIZ01000019.1| GENE 70 62623 - 63363 258 246 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 8 234 7 230 311 103 27 2e-21 MSQYRVEMKNVHKSFGDNDVVKGVNLNVANNEVVVMIGASGAGKSTVLRMINGLETVTSG EILIDGEDIAHKGTNINKVREKIGMVFQHFNLFPNMSVMGNITLAPIELGIASKEEATQQ AKEMLEVVGLTDKADAMPAQLSGGQQQRVAIARALAMHPDIMLFDEPTSALDPEMVGDVL GVMRRLAKQGMTMVIVTHEMGFAKEVADRVVFFDNGTILEQGTPTDIFEHPKEERTKSFL NKVLNA >gi|225002560|gb|ACIZ01000019.1| GENE 71 63502 - 64368 853 288 aa, chain - ## HITS:1 COG:SA2374 KEGG:ns NR:ns ## COG: SA2374 COG3001 # Protein_GI_number: 15928167 # Func_class: G Carbohydrate transport and metabolism # Function: Fructosamine-3-kinase # Organism: Staphylococcus aureus N315 # 2 283 1 283 288 326 57.0 3e-89 MLTAAWTKQLPLQHITAITPVGGGDVNQAYRVDTAEKPYFLLVQPGYPASFYAGEIAGLE AFEQADILAPRVIANDTIEGDGYLLLSFLTSGSGSQRDLGHLVAHLHQHHEPSGRFGFDY PYAGTSVSFANDWTDSWADLFIHQRLDKLSAHLRQKGLWQAADQTTFQQVRTIIQKTLNQ HHSEASLLHGDLWGGNYMFTADGQPALIDPAALYGDRELDIGVTTVFGGFTQDFYTGYQE VYPLDPGYQFRLEFYRLYYLMVHLDKFGMGYAGSVAAVMDRILDHGLA >gi|225002560|gb|ACIZ01000019.1| GENE 72 64479 - 65255 531 258 aa, chain - ## HITS:1 COG:BH0315 KEGG:ns NR:ns ## COG: BH0315 COG3910 # Protein_GI_number: 15612878 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Bacillus halodurans # 1 258 1 237 237 140 36.0 3e-33 MLLTKIEYAPPRHHSDYPFNLPWQADFHELILTRPVTILTGDNGSGKSTLLNAIADNYNA ILMSGAALEDDPEYDNSRALARHLKLTWTYRTKAGFFFRADDFISFIRATRGHIKYAQTQ LEHLAPQSLERLPYLNTLSAIKHLYQVDLDTLSHGRAFLALFRARLHANALYLLDEPESP LTPENQLSLLALIHAAVANGAQFIISTHSPILMAYPDAQLLALGDTLAPVHYDQIDHITF LRNFLDDPQRFVYHLLND >gi|225002560|gb|ACIZ01000019.1| GENE 73 65287 - 65442 125 51 aa, chain - ## HITS:1 COG:no KEGG:LGG_02858 NR:ns ## KEGG: LGG_02858 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus # Pathway: not_defined # 1 51 454 504 504 108 100.0 9e-23 MSFKQSLWMKPRKMAHLEIHIRKGNNDQSVSSRYMKADLAKRIMSWYQPLP >gi|225002560|gb|ACIZ01000019.1| GENE 74 65492 - 66802 978 436 aa, chain - ## HITS:1 COG:lin0882 KEGG:ns NR:ns ## COG: lin0882 COG3428 # Protein_GI_number: 16799955 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 63 420 64 405 494 149 28.0 9e-36 MNDKPKRLAPIAIPIHWLMSFIAWWPLFVSGGFSILKNDMKPQEFLFWISLVLGILVLTL LWSIVHYLRFTYLVAPDGLTINSGVFIRKINHIPYGRIQTVQRRQWFFLKPLGLEQVSIE TAGKESKKAEGMLAAVPTTVADAINRYRQGLTDTPTTSASDPTTEGAQTEVTPAAKTPDA AYKINAHDLNQYALTSLGFIPIVTGILWLVQKVQEYLPDSWYKQAEHALTGLAIYLIIAL TVIVLVLGFAISYLNILQRYYHFTLDRTGNELQTSRGFFQTNTVSAQLSRVQAVRFKQSV LRQWFHLSTVQALLASSAADDEKNDDLVLMPVIRQRQALTTMQTFISWLPTAAPELEPIP TRHRWYYVRNIVLGNFGLIVLPAILASTLWLHLSWWLWLLPVGLLWLVIVALQGQYAGAN AAIGIAAPRSARHPSG >gi|225002560|gb|ACIZ01000019.1| GENE 75 66795 - 67265 453 156 aa, chain - ## HITS:1 COG:lin0881 KEGG:ns NR:ns ## COG: lin0881 COG3402 # Protein_GI_number: 16799954 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 156 3 159 160 90 32.0 1e-18 MEQTGQALPATIQRIWRASAAIWALVILIAGLLLIAAWHFWHWSLWLAIGAMGFAILQLI FRLALVPYRYRFWRYNITPTAVFLQKGFFFQKNEAIPIARIQNVTLEAGPLLQWQELQQV NIETASTAHVIDGVTRPVADQLRNQILQLAQEARNE Prediction of potential genes in microbial genomes Time: Wed May 25 19:30:51 2011 Seq name: gi|225002559|gb|ACIZ01000020.1| Lactobacillus rhamnosus LMS2-1 contig00023, whole genome shotgun sequence Length of sequence - 1806 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 117 - 176 5.3 1 1 Op 1 . + CDS 260 - 1534 1236 ## COG1653 ABC-type sugar transport system, periplasmic component 2 1 Op 2 . + CDS 1562 - 1805 225 ## LC705_02837 hypothetical protein Predicted protein(s) >gi|225002559|gb|ACIZ01000020.1| GENE 1 260 - 1534 1236 424 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 36 375 20 368 419 137 27.0 5e-32 MKRRWLLGIATGLMALALTACSSGGSSTSKSSKGPVTITFWHRMTGNYNKALESYIKTFN SSQKQYKVVATSQGSYDNLQKKYLASAKSRTLPTIGQVTDTIIPEYVHDGMLVNIDQQVK DQFSSAELKSIYPGIATNLKYHGSYYQIPFATGTRIMFYNKDILDKYHLSVPKTWSELEK IGQQLKGDGITGVAFNKSYDFEFETLAYDAGNRLITPKYQAKIDTPASIKAMTAITSMLQ DKTAVTAGLDNYFNVPFVQGKIFAGFGSSATIQQIASTAPKDMHWGTAVMPSFEGKASSV LGNNGISVFKGASAAQIKGAVKFMKFLMSKKIQTQWAKASGYVPVVSTATKSSAYQAYLK ANPPYQAAIKAYDDAFSSTPFIGYNTYRNNLLDAVDQTVSKKAAPKTVLTQLQKQAETIL KDNR >gi|225002559|gb|ACIZ01000020.1| GENE 2 1562 - 1805 225 81 aa, chain + ## HITS:1 COG:no KEGG:LC705_02837 NR:ns ## KEGG: LC705_02837 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 81 1 81 91 137 100.0 1e-31 MTTFKRILKRTLIYTLLVLGLAVLMTFGYVGYQDVTAGKGYLALRYLVLTAESVVGGFFL FLIVVSLDTWREHREKKREQT Prediction of potential genes in microbial genomes Time: Wed May 25 19:31:06 2011 Seq name: gi|225002558|gb|ACIZ01000021.1| Lactobacillus rhamnosus LMS2-1 contig00024, whole genome shotgun sequence Length of sequence - 44777 bp Number of predicted genes - 42, with homology - 41 Number of transcription units - 21, operones - 11 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 16/0.000 - CDS 34 - 780 493 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 2 1 Op 2 . - CDS 784 - 2382 1526 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Prom 2759 - 2818 3.8 3 2 Tu 1 . + CDS 2885 - 4990 1056 ## COG3409 Putative peptidoglycan-binding domain-containing protein + Term 5182 - 5222 5.8 4 3 Tu 1 . - CDS 4976 - 5587 169 ## LC705_02833 hypothetical protein - Prom 5612 - 5671 4.1 5 4 Tu 1 . - CDS 5957 - 6136 64 ## gi|229551220|ref|ZP_04439945.1| conserved hypothetical protein - Prom 6344 - 6403 5.7 6 5 Tu 1 . - CDS 6677 - 7249 282 ## LGG_02844 hypothetical protein - Prom 7319 - 7378 4.3 + Prom 7257 - 7316 2.4 7 6 Tu 1 . + CDS 7354 - 7437 63 ## - Term 7478 - 7517 -0.8 8 7 Tu 1 . - CDS 7586 - 7930 207 ## LC705_02831 hypothetical protein - Prom 7968 - 8027 6.1 + Prom 7991 - 8050 5.8 9 8 Op 1 . + CDS 8080 - 8955 591 ## LC705_02830 transcriptional regulator xre family 10 8 Op 2 . + CDS 8952 - 9800 491 ## LC705_02829 transcriptional regulator xre family + Term 9863 - 9928 14.3 - Term 9707 - 9752 -0.8 11 9 Tu 1 . - CDS 9977 - 10996 633 ## LC705_02828 transcriptional regulator xre family - Prom 11173 - 11232 3.1 12 10 Tu 1 . + CDS 11087 - 12358 411 ## PROTEIN SUPPORTED gi|148990506|ref|ZP_01821647.1| ribosomal protein L11 methyltransferase + Term 12417 - 12455 2.3 + Prom 12505 - 12564 5.7 13 11 Op 1 13/0.000 + CDS 12593 - 13570 1018 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 14 11 Op 2 13/0.000 + CDS 13596 - 14408 823 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 15 11 Op 3 4/0.000 + CDS 14426 - 15337 880 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID + Term 15368 - 15410 9.5 + Prom 15356 - 15415 4.9 16 11 Op 4 . + CDS 15661 - 16026 409 ## COG4687 Uncharacterized protein conserved in bacteria + Term 16056 - 16106 4.1 - Term 16037 - 16099 10.1 17 12 Op 1 . - CDS 16142 - 17071 1016 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 18 12 Op 2 . - CDS 17146 - 18327 1118 ## COG2807 Cyanate permease - Prom 18354 - 18413 3.5 19 13 Op 1 3/0.000 - CDS 18420 - 19841 945 ## COG0477 Permeases of the major facilitator superfamily - Prom 19878 - 19937 3.0 - Term 19916 - 19968 14.9 20 13 Op 2 . - CDS 19997 - 20620 603 ## COG1335 Amidases related to nicotinamidase - Prom 20778 - 20837 2.2 21 14 Op 1 . - CDS 20877 - 21395 271 ## LC705_02815 kinase 22 14 Op 2 . - CDS 21395 - 21859 438 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Prom 22308 - 22367 4.7 23 15 Tu 1 . + CDS 22403 - 22954 1004 ## PROTEIN SUPPORTED gi|199597676|ref|ZP_03211104.1| Acetyltransferase, including N-acetylase of ribosomal protein + Term 22957 - 23020 21.0 - Term 22949 - 23003 8.5 24 16 Op 1 8/0.000 - CDS 23081 - 23410 409 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 25 16 Op 2 . - CDS 23410 - 23739 463 ## COG1440 Phosphotransferase system cellobiose-specific component IIB - Prom 23785 - 23844 5.2 + Prom 23748 - 23807 8.3 26 17 Op 1 1/0.000 + CDS 23954 - 24664 791 ## COG2188 Transcriptional regulators 27 17 Op 2 . + CDS 24755 - 26116 1335 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 28 17 Op 3 . + CDS 26156 - 26575 391 ## LGG_02820 hypothetical protein 29 17 Op 4 . + CDS 26593 - 27693 754 ## COG3589 Uncharacterized conserved protein + Term 27740 - 27797 10.3 - Term 27729 - 27784 14.5 30 18 Op 1 16/0.000 - CDS 27824 - 29227 1225 ## COG0165 Argininosuccinate lyase 31 18 Op 2 . - CDS 29220 - 30440 1176 ## COG0137 Argininosuccinate synthase 32 18 Op 3 1/0.000 - CDS 30501 - 31949 1414 ## COG0765 ABC-type amino acid transport system, permease component - Prom 31975 - 32034 6.1 33 18 Op 4 . - CDS 32043 - 32717 436 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Prom 32999 - 33058 4.4 34 19 Op 1 8/0.000 + CDS 33086 - 33799 740 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 35 19 Op 2 4/0.000 + CDS 33815 - 35725 1697 ## COG5002 Signal transduction histidine kinase 36 19 Op 3 4/0.000 + CDS 35715 - 37118 1063 ## COG4863 Uncharacterized protein conserved in bacteria 37 19 Op 4 4/0.000 + CDS 37174 - 37971 757 ## COG4853 Uncharacterized protein conserved in bacteria 38 19 Op 5 3/0.000 + CDS 38026 - 38862 567 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I + Term 38957 - 38998 -0.9 + Prom 39200 - 39259 3.1 39 19 Op 6 . + CDS 39302 - 40636 1403 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 40638 - 40698 17.2 + Prom 41013 - 41072 6.1 40 20 Op 1 . + CDS 41204 - 41632 441 ## LC705_02796 hypothetical protein + Term 41696 - 41734 3.0 + Prom 41685 - 41744 5.0 41 20 Op 2 . + CDS 41793 - 42233 485 ## COG0071 Molecular chaperone (small heat shock protein) + Term 42267 - 42308 10.2 + Prom 42601 - 42660 9.9 42 21 Tu 1 . + CDS 42684 - 44510 1879 ## COG2217 Cation transport ATPase + Term 44538 - 44594 7.2 Predicted protein(s) >gi|225002558|gb|ACIZ01000021.1| GENE 1 34 - 780 493 248 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 243 1 241 245 194 45 8e-49 MANEPLIQVKNLKKAFGNHEVLTDINLDVQAGEVVSIIGRSGSGKSTLLRNINLLETPTG GDILFHGKSILGDDVKLSTYRAKVGMVFQSFNLFNNMTVLQNVMVPQQTVLKRDAAAAKT HALELLKQVGMDPFVAAKPDQLSGGQEQRVAIARAEAMDPEVLLFDEPTSALDPEMVDDV LNTMTALAHTGLTMIIVTHEMAFAREVSDRVVFMNNGVIAESGTPDQIFGNPQQQATKEF LKRYLNRV >gi|225002558|gb|ACIZ01000021.1| GENE 2 784 - 2382 1526 532 aa, chain - ## HITS:1 COG:SP0453_1 KEGG:ns NR:ns ## COG: SP0453_1 COG0834 # Protein_GI_number: 15900370 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 28 328 19 325 325 286 53.0 5e-77 MRKHWVARLGVLGFALSLLLGSFAATPVSAASDDNTFKVGMEAGYAPFNWTQTTSANNAV KIQGSQEYANGYDVQIARKVAKALHKKVVVVKTSWDGLPPALTSGKIDAIIAGMSPTPDR RKTIDFSNPYYISNLTMVVRKDSKYAKAKSIADFKGAKITAQLSTYHYQAINQIKGVVKE PAMNDFPAMRVALESGTIDGYVSEVPEGITAERANPNLMYIHFAKGQGFKTDASDTNLAI GLRKNDPNKAKINELLATISTKERARLMNEAVDNQPSTEKSGNWFMAIMKQYGPMLLRGT GMTLLISLVGTLVGFIIGLLVGIIRTTPKPKKLGQRGLRAVINWLLSVYIEVFRGTPMIV QAAVLYYGAAQAWHLNMDRTTAALLIVSINTGAYISEIIRGGIISVDEGQFEAANALGMT HLQTMMKVILPQAVRNSLPAVTNEFIVNIKDTSVLSVISVSELFFSGETIAGQSFQFFHT YLIVSGIYLIMTFTISRLFRLIEKHLDGPKDYNVMNNQMQVETPKISTAKED >gi|225002558|gb|ACIZ01000021.1| GENE 3 2885 - 4990 1056 701 aa, chain + ## HITS:1 COG:BS_ybfG KEGG:ns NR:ns ## COG: BS_ybfG COG3409 # Protein_GI_number: 16077289 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative peptidoglycan-binding domain-containing protein # Organism: Bacillus subtilis # 1 469 1 478 732 380 45.0 1e-105 MADEAVLAVQKWLNKTYSSVSGFTTAPENGQTGWPTIYSLRMGLQHEIGISAIGEGFGDA TKTALASVVGSLKPGYKGNIAQLIQGAFWCKGINPGSDFNQDFSDATEQAFKTLQQNAGI TANGVVTVNLMAALFDMAAFTLVTGGSEKVRSMQQYLNGRFSNNIGILPCDGIYQRDTNT ALIYALQRAEGMAADVANGIYGQKTIDNCPVLSEGSTDTDAVRILQYGLLVNGFTDIPTN GQFTSAVGDAVAAFSTMMNLEPTTGRIAGNRVIKGLLTSNGDTTRDSIACDTSKQLTSSD VALLRKYGFSIVGRYLKGAVGNAFTPKNLTASEIKSITDGGMSIFPIYQDGGADIKYFTE TQGVLDAMTVASTARVLGFPNSTIIYFACDVDILEGDIEATVVAYMRGVNSGLAKSGFRA GIYGTRNVCAHVLKAGYAVRCFVSDMSTGYSGNLGYAMPLNWSFDQFIEYSIGDIPIDQV ATDVKISDPGTKTFTPGALPDSAKVVVANDLMNGLIDDLVNFSAGKDYMFPMPSPGVIAT WSVDFTAGNGPIGIKDGKLDSVALQKKFESNFGNIKDATSYQAVIDQSKVIQVGAKISQG SIDYSIKTDQIGTVELDITVNVIKAKKLSNVDVNIAVNWKIKFMPIYWQNHPEVKVAERP VFSTGFSLDLAGNMGTNYLSAATSLVATAVIVGGALILVFA >gi|225002558|gb|ACIZ01000021.1| GENE 4 4976 - 5587 169 203 aa, chain - ## HITS:1 COG:no KEGG:LC705_02833 NR:ns ## KEGG: LC705_02833 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 203 1 203 203 357 100.0 1e-97 MFSLYSWVIYAILFLIASFCCAFYSLFIRHKFKLHDRLLTKAFGDPLHNPYRFLETEDDQ IARLSQAFKFTTFIGIGCYFIGLFLFFKNLNNFSNQINLGLIAITICFMLIGIISLILAQ LTDQQKMIRQIKAYHQQKYKLKFCDFFDSAKPSASIRRNQANIVGLLFLLAMLFCIFMFF NSVNYSPLSTSRITPTYLLLGKH >gi|225002558|gb|ACIZ01000021.1| GENE 5 5957 - 6136 64 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551220|ref|ZP_04439945.1| ## NR: gi|229551220|ref|ZP_04439945.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 59 124 182 182 103 100.0 4e-21 MEYQHLKAKESLTAPIKDFFGSKQPLISMRLFTLGMTSSALLIVSFFCLFIDLTQPLSR >gi|225002558|gb|ACIZ01000021.1| GENE 6 6677 - 7249 282 190 aa, chain - ## HITS:1 COG:no KEGG:LGG_02844 NR:ns ## KEGG: LGG_02844 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 173 1 173 173 278 95.0 9e-74 MGLVENWFPFIWLLLLGSGSLSVYTFYLRRKFHYNPYSLKKAFSNSPTNPFQFGKQSNSK IRQLITWSKVTLLLFILTDIATFVLLIMTITEVISNNSIDDPWPIIIVTSFTVGLGILFN VIAQKKMTLQIKHYQQIKHKVTFAMPIQSFFDSQAPSVGFRILSLSIINLVCLWSAIFAT VMLLAIPNLH >gi|225002558|gb|ACIZ01000021.1| GENE 7 7354 - 7437 63 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLEAKYFNFSLYMKVTAGKAETLLTDN >gi|225002558|gb|ACIZ01000021.1| GENE 8 7586 - 7930 207 114 aa, chain - ## HITS:1 COG:no KEGG:LC705_02831 NR:ns ## KEGG: LC705_02831 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 114 1 114 114 168 100.0 6e-41 MSESQTWISFLSTRNPALKMRPLAYCFIKTCLFAGPYSAFMSLFITGETLWTFSAIIFMC IVVFVANVVATISYAKKGTLVSLFKSKKRWLVQAFVSALGTFLLLSLRLLVAYM >gi|225002558|gb|ACIZ01000021.1| GENE 9 8080 - 8955 591 291 aa, chain + ## HITS:1 COG:no KEGG:LC705_02830 NR:ns ## KEGG: LC705_02830 # Name: not_defined # Def: transcriptional regulator xre family # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 291 1 291 291 540 100.0 1e-152 MTEEAIKIGAYLRTLRLEENDSLEEIAAGITTAATLSRFERGETQLSAAVVLKLLTRFDQ DVASIQQGYRALNQENFFQEVERATVAGKSALQALAQKQYQLWRQTGFIFYRLNQINILA HNEFSDPSFQTTTKMKHDVIKYLKRIRHWGLYELDLFAATLMLYDSEQLVNLVTGMVLDL PDTKSHPVRDQYLWAILTNSIALLIHRREFADATRLWHIAMNLAIPPDDLYSRLMLSYQH QLLMYHRGQHRAAKAEIEKLLTTLALLDSPFFAQLLTKSWQRFLEEEVRSN >gi|225002558|gb|ACIZ01000021.1| GENE 10 8952 - 9800 491 282 aa, chain + ## HITS:1 COG:no KEGG:LC705_02829 NR:ns ## KEGG: LC705_02829 # Name: not_defined # Def: transcriptional regulator xre family # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 282 1 282 282 468 100.0 1e-131 MTIGKQFKLMRKERKLTLKEAAGDILSVSSLSKFENDTSQLAADRFFLLLDRLNLDWDTF TQPQSDNKRPFLHRYLVAVRHGDVQTLAGILRQLPLANTNQRLLLHLTLHNLAPERFSIL AREQMQAKTLLLKTAAWSLLLRLIALQLAAVVPLSDLAQLTHAFSVQVQSPNTPQDHLNL ANRTFLTAMLRYIDAGRRKEAQQTLAFIRQATVGDLGVEFQIACTKRLLMIDAPDRRVSM RGQQELDALIAMLQKIATPEWTSSWLPALEALAEAKRCGKDA >gi|225002558|gb|ACIZ01000021.1| GENE 11 9977 - 10996 633 339 aa, chain - ## HITS:1 COG:no KEGG:LC705_02828 NR:ns ## KEGG: LC705_02828 # Name: upsR # Def: transcriptional regulator xre family # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 339 1 339 339 650 100.0 0 MVEKIDPTDGAVFRQLRLNHHQTLAQVADDQNSIAFISKFEQGKSNISFSRLSHLLFRIN MSVEEFLFIRDLQAGIVPPLKDSEFTYNTLIHRDFEAVLAFQDRFSSEEPTLADYRYLLK QEKIWQQRYAQDHNRQTQFEFITIRIFRLTMIDRVKPPEQPSPFTNVEDAMAQLQALAKP VVSYLYTVEVWNYFELYWFRHLMVALPSKTIHNLLPLAIKRSEKYRAFNQIGTLRVKTLF SAFTVFINARQLPDAKKALTTAERLLYDANDLANSALLLFLRGWYQAVAGQTAAGFELCQ QAISLEHILDQPRQERWLRYLLKFIHQNIADPESSALFL >gi|225002558|gb|ACIZ01000021.1| GENE 12 11087 - 12358 411 423 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148990506|ref|ZP_01821647.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae SP6-BS73] # 7 408 7 415 415 162 28 2e-39 MHEYMNNHGYRAILNASLLSGIGDSLYNIVFIIYAATMPFKSLAVTLAAMATSLPTMLSM ITGSLADRTQAKTRHMVAARIGQMLLFCGLAGMIVLPASLPLFLGLLAINIISDTLGQYG NGLTLPILHRLIPAKELNTAISFQSATGTTVQMVFQAVGASLIVLLDHNYALFGAINAVT FLLAAVVLIRQNKRLKQAEPPVATHVHQPIFKNIRNVIRFLTTNHFLLAVIIFAMLVNTL GSSVDGLMSVTLVQQPMMWLRNFGTTVAIMNIIFSVGLILGALFAKDGLQRLSTFKLLGL LMAAMIGLSCSFFLLRSLWAAMIFSFATAYLMGKINPRLSTVMMRLVPERQMGTTAGVIN LVALLGMPVGQVVFFTIANVVSAAVSWMVMAGLSLILCLALLVMGNRIADPIFTDFESDP SKA >gi|225002558|gb|ACIZ01000021.1| GENE 13 12593 - 13570 1018 325 aa, chain + ## HITS:1 COG:CAP0066_2 KEGG:ns NR:ns ## COG: CAP0066_2 COG3444 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 158 325 1 168 168 253 75.0 2e-67 MVGIILASHGQFAAGIKQSGQMIFGEQEKVEAVTFMPDEGPDDLHKHLEDAIAKFDPDDE VLFLIDLWGGSPFNQANSIYEEHKDKWAIVTGLNLPMLIEAYGSRLSMDSAQDIAAHLLD AGRDGIKIKPEALDKVKKPAAQAAAPSTANAGQPGSFQYVLARVDSRLLHGQVATTWTKT TNPTRIIVVSDSVAKDELRKNLIKEAAPSGVKAHVVPIDQMIKLAKDDKHFGGQRALLLF ETPEDALRAIEGGVPIKELNIGSMSHSVGKVQPNKVLAFDQKDIDTFHKLADDGVKFDVR KVPSDHPDDMNAILKKAQDELNAQK >gi|225002558|gb|ACIZ01000021.1| GENE 14 13596 - 14408 823 270 aa, chain + ## HITS:1 COG:CAP0067 KEGG:ns NR:ns ## COG: CAP0067 COG3715 # Protein_GI_number: 15004771 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Clostridium acetobutylicum # 1 270 1 268 268 288 80.0 9e-78 MTLNFIQIILVLIVSFLAGMEGILDEFHFHQPVIACTLIGLVTGNLAPCLVLGGQLQMIA LGWANIGAAVAPDAALASVASAIILVLGGQGTKGVSSAIAIAVPLAVAGLLLTTLVRTLA TAIVHIMDRAAEEGSFGKIDFWQWVAICMQGLRIAIPAGLILAVGAGPVRALLEQMPDWL TTGLGIGGGMVVAVGYAMVINMMATREVWPFFAIGFVLATVKEITLIGLGAIGISLALIY LALSKQGGGSGNGGSNSGAGDPVGDIIDNY >gi|225002558|gb|ACIZ01000021.1| GENE 15 14426 - 15337 880 303 aa, chain + ## HITS:1 COG:CAP0068 KEGG:ns NR:ns ## COG: CAP0068 COG3716 # Protein_GI_number: 15004772 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Clostridium acetobutylicum # 1 303 1 303 303 466 77.0 1e-131 MAEEVHITKGDRIKVWWRSTFLQGSWNYERMQNGGWAYTLIPALKRLYHTKEDRSAALKR HLEFFNTHPYLASPILGVTMALEEERANGAPIDDKAIQGVKVGMMGPLAGVGDPVFWFTV KPIIGALAASMAMAGNLLGPILYFVLWNAIRMAFLWYTQEFGYKAGSKITEDLSGGLLGE VTKGATILGMFILGSLVNRWVSVKFTPVVSNVPNQKGAYIDWSSLPSGKAGVQKALELQS QGLSLTKNKVTTLQDNLDSLIPGLMGLLLTLFCMWLLKKKVSPIIIILGLFVVGVVFHVI GLM >gi|225002558|gb|ACIZ01000021.1| GENE 16 15661 - 16026 409 121 aa, chain + ## HITS:1 COG:lin0146 KEGG:ns NR:ns ## COG: lin0146 COG4687 # Protein_GI_number: 16799223 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 117 1 117 129 153 66.0 6e-38 MVQSINTKSELVIEGTAFMGMPAYGKIMIGDKGFEFFNEKNVRDFYQIPWNEVDWVIASV IFKGKWIPRFAIKTKKNGTYTFAAKDPKRVLRAIRVHIPAERIVKSLTFWQVVKRAFTRK K >gi|225002558|gb|ACIZ01000021.1| GENE 17 16142 - 17071 1016 309 aa, chain - ## HITS:1 COG:BS_iolS KEGG:ns NR:ns ## COG: BS_iolS COG0667 # Protein_GI_number: 16081029 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Bacillus subtilis # 7 303 6 309 310 296 48.0 4e-80 MAITTTIGKSHVVTGKLGLGTNKVGGHNLFPNLHDEDGLAVVKTALDHGIEMLDTAYMYG LGQSETLIGQAIQGYDRAKIILATKAAQDPHQDLKPNNDPKFLTQAIDDALLRLKTDYLD IFYIHFPDDKTDKAEAVNAVANARKAGKVRAIGVSNFSLDQIKEANQDDQVDVVEDHYSL VHRDAETTLFPYLKEHQISFVPYFPLASGLLTGKYGPDDADKFKKRFSADEFKEILAALR EVDGIADAHQATIAQIMLAWYMKNPDIAVVIPGARLPEQAASNAKALDVDLRDAEYESIN ELFKNFKTK >gi|225002558|gb|ACIZ01000021.1| GENE 18 17146 - 18327 1118 393 aa, chain - ## HITS:1 COG:lin0946 KEGG:ns NR:ns ## COG: lin0946 COG2807 # Protein_GI_number: 16800015 # Func_class: P Inorganic ion transport and metabolism # Function: Cyanate permease # Organism: Listeria innocua # 6 381 15 392 405 225 39.0 1e-58 MEKNHSTTLLTWGILLVGANLRLPITMIPPLLPTIERTLGLPASMAGMLTTIPLLMFALA SPLIAKMGNRRGNEWSLLIALIILLLGSLLRIIPSLIALVIGTLLIGFGISGGNVLLPAI IKDQFPQSIGAKTSLYTVTMGLVASLGTGLAGLLNQQFHMKFTMAAFSLVGVAGLVVWAL AFRRLAPIKNQAATGRRNVRVSRSLLAWWIALFFGLQSFLYYSLLTWLPSLWHAAGFSQL AAGNLATIFQLSGMPATLSIPFIAERRHGMAYSVWGIMLGFVLGALGVLIPGANFGLNVV FSLLMGVASGAAFAICIVFFQKKTADAYETASLSGFAQSLGYLFAAVGPVLYGFIQTTTG SWNLLLWITVGLTLFMFGAGLIINAKHSIFAPQ >gi|225002558|gb|ACIZ01000021.1| GENE 19 18420 - 19841 945 473 aa, chain - ## HITS:1 COG:L184516 KEGG:ns NR:ns ## COG: L184516 COG0477 # Protein_GI_number: 15672362 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 8 455 2 453 467 290 40.0 3e-78 MQHLTTTSKRWWLLIALGFFAFMTNLDGSIVNIAIPLMAKNLHVSASRMEWTVSLYLIVL SALLLPFGKLGDRIGKRRIFKWGTGTFVLGSLMAGINLGFNFLMLGRMVQALGGAMTLAN TYGIVTSTFALAERGRAMGVVSTFVALGGVAGPSLGGLILAHFSWPMIFLINVPIGLIAL GISLWSMDNGRPQPGAYDGVGMVLQATAIASGFWGLNLAQQSGFGDPLVLATLALAVISL MAFLGFERHQSAPLLPMSIFRVRIFTLGVLTVFFIFMVQFFSTVLMPFYLEDARRLTPGA AGALLSLYPLMMVFFAPLGGWLADKWQVPAVALLGSLLIAIGSLLGATLKLNAPLTIYII STLLIGIGSGLFQSPIGDVVMSVVPKAQLGIAGSFNALARNLGMVSGTAVATTVLFGTMS HLAARRVTTYPTNHPEFFMVGLQIAMLVAAGLALLGAIAIALTIKPWQAHKKN >gi|225002558|gb|ACIZ01000021.1| GENE 20 19997 - 20620 603 207 aa, chain - ## HITS:1 COG:RSp0661 KEGG:ns NR:ns ## COG: RSp0661 COG1335 # Protein_GI_number: 17548882 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Ralstonia solanacearum # 1 200 1 200 212 267 63.0 9e-72 MTSYPRRDPVTDQLLTPENSALILIDYQPTQVESIGSMNHHTLIQNVVMTAKLAQVYKVP IILSTVNVKSGRNKDTIPDLKKVLGDLPSIDRTSINAWQDQDFVEAVKATGRKNLVMAAL WTEACLTFPTLDALAEGFHVFPVVDAVGGTSTIAHETALRRIEQAGAQLTTNAQLACEWQ RDWNRTETVPDFVKLMLESGDFINLGA >gi|225002558|gb|ACIZ01000021.1| GENE 21 20877 - 21395 271 172 aa, chain - ## HITS:1 COG:no KEGG:LC705_02815 NR:ns ## KEGG: LC705_02815 # Name: not_defined # Def: kinase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 172 2 173 173 330 100.0 1e-89 MKQLIILRGNSGSGKTTTAKALRKHLTNSLLISQDVVRRDMLAEKDKPNSPNIELIDLIA RFGFSHQQIVIVEGILSAARYGQMLKALMNTADQSLVYYFDLSFDETLRRHAHRPKAAAF GAEAMHRWFRPHDYLGVPNEHLIQADQSQDTVVSRILADLNKRNSDQARYSD >gi|225002558|gb|ACIZ01000021.1| GENE 22 21395 - 21859 438 154 aa, chain - ## HITS:1 COG:SPy0477 KEGG:ns NR:ns ## COG: SPy0477 COG0494 # Protein_GI_number: 15674593 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pyogenes M1 GAS # 3 147 4 151 158 93 38.0 2e-19 MADYIKQIRAKVGHTPLIMAGVIGILTDEAGRVLFQQRSDFKGQWGLISGTIEYGETPAQ TMIREFKEETNLTVKVVSLLGVDGDLTLTYPNGDVAQWLCPVFLVKQLGGELSADNDETE QLQYFAPSEAPRLFNQQHRAALAHFIAGETGYFD >gi|225002558|gb|ACIZ01000021.1| GENE 23 22403 - 22954 1004 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199597676|ref|ZP_03211104.1| Acetyltransferase, including N-acetylase of ribosomal protein [Lactobacillus rhamnosus HN001] # 1 183 1 183 183 391 99 1e-108 MTVTLKHFQTEDLETLWKVAFSDPDAEWHKWNGPYFNDKVPTLEEMQENQANQTGYQWVA NPFVNGIWVDGILVGDVSAHYEDGDLQRWLDLGIVIYDETYWSKGIGKQALDQWIDRIFG LIDLPHLGITTWSGNERMIGLAKSVGMKQEARVRQVRYYQDRYWDSVKYGILREEWQAQR QSK >gi|225002558|gb|ACIZ01000021.1| GENE 24 23081 - 23410 409 109 aa, chain - ## HITS:1 COG:L19292 KEGG:ns NR:ns ## COG: L19292 COG1447 # Protein_GI_number: 15672396 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Lactococcus lactis # 2 108 8 114 116 98 54.0 2e-21 MPEDDQNLETVMGLIMNGGNAKSSAFEAIHAAKAGDFKLADDKLKESDHFLTEAHNVQTG MLTAEAQGDHAKVTLLMVHSQDHLMNAITFRDLAGEIVALYKRLAEKEA >gi|225002558|gb|ACIZ01000021.1| GENE 25 23410 - 23739 463 109 aa, chain - ## HITS:1 COG:SPy1324 KEGG:ns NR:ns ## COG: SPy1324 COG1440 # Protein_GI_number: 15675267 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 4 103 2 103 103 96 56.0 9e-21 MAEKKIMLVCAAGMSTSMLVTRMQKAAEKDGLSVHIFATAASDADNKLESEKPDVLMLGP QVRYLESQFKRDLDIPVSVINMQDYGLMNGEKVLKASLKAIDDSKGAEA >gi|225002558|gb|ACIZ01000021.1| GENE 26 23954 - 24664 791 236 aa, chain + ## HITS:1 COG:BS_yydK KEGG:ns NR:ns ## COG: BS_yydK COG2188 # Protein_GI_number: 16081065 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 21 220 25 222 236 97 30.0 2e-20 MYHDIAEQLIQDILAGQYPVKLPTEQVLMDRYQASRNTIRKALDVVFAHGLVRRVQGSGY YVIDHSAQSDAVLNMSIGFDQTAMVKGGPLTSKVVKFALIPATAALAQRGNVSRGDMVYQ VVRLRYLKGQLYDLEESYFPQAIVPHLSAEIAAGSIFTYLRNTYAMVGSTTENYIQSRPL PAEYAELMAMSAQTDHLCLDGINYLASGKVFNFSRTYFVYPGLTLYYHTTNIDLNR >gi|225002558|gb|ACIZ01000021.1| GENE 27 24755 - 26116 1335 453 aa, chain + ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 446 1 445 454 432 55.0 1e-121 MNGLINWLNKHVVPIAARIGSIRWLVALRDAFIAIMPAMMAGAVSTVLNALIRDIPTQFG WTGFVNSMQWLIGINAVVWTGTLAILGLIFSFTFGYQLAVQYKVEPVTAGIVTLGTFIMS LPQNFTMTLKAGLAKGAVKTLTDAGTVVSGKDVSMWGFFNFGKFFGAYGFFTVMLMGAIA ATIYIWLMKKHITIKMPDSVPPAVANAFTGIVPAAVALYGVGIINYLFTQFGTTVIEFIA KVLQEPLLSLSQGYGSVLIMTILVQVFWFFGIHGTNVLGPVLDSIWLTAQLANINAFHKG QALPYLWTRNSFDLYAWIGGAGSTLLLLIAILMFSKRDDQRAVAKLSIAPGFFNVNEPVM FGMPIVLDPIYFIPFILAPVVMVSIAYGAVVSGLVSPIKNQIVWSMPPFLNALVATMDWR AAVLQAVNMIIGFLIYVPFVKAANRIKPAQLAD >gi|225002558|gb|ACIZ01000021.1| GENE 28 26156 - 26575 391 139 aa, chain + ## HITS:1 COG:no KEGG:LGG_02820 NR:ns ## KEGG: LGG_02820 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 139 1 139 139 256 100.0 1e-67 MKIQMTLKVPAAFMYGQLIRSAQADIKAHTGREVLVGSLDGFTYQKKWANGMTGKLTITH AIANQRYAYELDTDRDHYHVDYQLRDLGDQQMQLDYTEIIEGKTAKGKANNRTAGFLLNW QRKHRFKKMSRQMAAQYFN >gi|225002558|gb|ACIZ01000021.1| GENE 29 26593 - 27693 754 366 aa, chain + ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 361 1 359 364 389 52.0 1e-108 MKRLGISLYPDQSSFEENKAYLDLAHRYGYTRIFTSLLQLLGEDGEDLLAKFRQTIDYAN QLGFKTIVDINPALFKELKISYDDLSFFETLHVWGLRLDEGFTGAEEARMTRNPYGLKIE LNMSHGTNYLASIMAYDPNRDNLIGCHNFYPQAFTGLSEAIFTEYSQQYREYGLHTAAFV SSSSGKIGPWPLHDGLPTMESDRHRNIASQTTHLCLTGLIDDVIIGNAFATEAELKAVAD TFLAPYPILHAEMLASITPLEEKIAFAAPHLYRGDASAYLLRDTQPRITYSTASIPAHDH GQPFKRGDIVVVNDAYGRYKGEFQIVLTPFSDDGQRNLIGHVAADDADLLTLIKPWSTFS LQKRTR >gi|225002558|gb|ACIZ01000021.1| GENE 30 27824 - 29227 1225 467 aa, chain - ## HITS:1 COG:BH3186 KEGG:ns NR:ns ## COG: BH3186 COG0165 # Protein_GI_number: 15615748 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Bacillus halodurans # 4 459 3 458 458 554 60.0 1e-157 MTDKLWGGRFTEKAAHWVDAFGASIGFDQQMAKEDLEGSLAHVKMLGKTGIIPQADADTI TAGLHHLKKELAAGKLHFTVENEDIHLNMEALLTAEIGPVAGKLHTARSRNDQVATDLHL WLKHRLPAIKEALTNLQTVLVGQAKAHAATIMPGYTHMQHAQPITYGHYLLAYFEMFQRD WERFDFTQKHTDILPLGAAALAGTTFPIDRELVAQELGFDQLYHNSLDAVSDRDFALEFL SNSAILMQHLSRMAEELILWSTFEFNYIELGDDFSTGSSIMPQKKNPDFAELIRGKTGRV YGALMGLLTTMKAIPLAYNKDMQEDKEPIFDAYNTILGSLHIFTGMLSDLTVHEQRMAAA TTHDFSNATELADYLATKGVPFRQAHAIVGELVLKGIKTGTALQEMPLSELQEAAPQIQA DVYAELTSKAAVNRRTSLGGTAVSNVLKEVTRDEKIIADHENAAPSM >gi|225002558|gb|ACIZ01000021.1| GENE 31 29220 - 30440 1176 406 aa, chain - ## HITS:1 COG:L126739 KEGG:ns NR:ns ## COG: L126739 COG0137 # Protein_GI_number: 15672106 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Lactococcus lactis # 3 396 5 396 398 489 60.0 1e-138 MTEKIVLAYSGGLDTSVAIPWLMDKGYEVIAVVLNVGQPDADFDAIQQKALKVGAIDSIV VDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATAIAHGSTGK GNDQVRFEAAIHALDPEMKIEAPIRDFHWSREEEIDYAKEHHVPVPIGKKSPYSIDANLW GRANEAGILENPWNQAPDDAWGMTVAPEAAPDKPTFLDLTFQQGVPVALNGNPMPLAAMI KQLNQIAGANGIGRIDKIENRLVGIKSREVYEAPAAAVLMTAHHDLENLTLERDVQHFKP TIENKLTNMIYEAQWISPLFDALMAFIDKTQAVVNGTVKMKLYKGSAVPVARQSTHNSLY DEDLATYTSADSFDQEAAAGFIKLWTLPTTVFEQVNHVHSEEKQHD >gi|225002558|gb|ACIZ01000021.1| GENE 32 30501 - 31949 1414 482 aa, chain - ## HITS:1 COG:lin2352_2 KEGG:ns NR:ns ## COG: lin2352_2 COG0765 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 271 480 1 210 215 262 63.0 1e-69 MRGIKHWAVAIIALIAMIVGFTSYQPVPTAAASKDLAAIQKRGYLVVGLSADYAPLEFHA TINGADTIVGADISMSKQIAKDMGVKLQIKEMNFTALIGALKTGKIDLIVSGMSKTPERE KEVNFSTPYLYETQVMVIRKADKAKYKSIADFSGKRVGAQKQTTQEQLAKTQLPGAKVTS LDKANDVVAQISYNKLDAGVLASTIADSYVARTPSLTVIDPHFATDKAPTAIAVSKQSPA LLKQVNKTISKVKGAKYKSYLQAAYKLQDQDQGFWAKYGNYFIRGAIYTLVFAVLTVLFG TIIGTLLALMKLSRNWLAKVVANIYIEFIRGTPLLVQAFIVFFGTQILGLDLSAFVAGAI AMAINSGAYVAEIIRGGINSVPVGQTEAARSLGLHQSQAMRYVILPQAMKNIWPALGNEF VTDIKESSVLSVIGATELMFEGTVVQGASFKPFLPLVVVAILYFIMTFTLSRLLRLIEKR FN >gi|225002558|gb|ACIZ01000021.1| GENE 33 32043 - 32717 436 224 aa, chain - ## HITS:1 COG:lin2547 KEGG:ns NR:ns ## COG: lin2547 COG0596 # Protein_GI_number: 16801609 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Listeria innocua # 8 222 8 235 239 112 31.0 4e-25 MFFHHDHLKLYYQKSGHGPAIILLHGNGEDHTLFADLITYLAPHYTVIALDSRDHGQSSA TDRLSYDAMTSDVSALITELELARPIILGFSDGGIIALLLAIRHPEQVGALIVAGANLTP QGLRWYSRILFRIAAGHRPSPKLAMMLHEPQITPQMLHRITVPTLVLAGSRDLITRKETF TIASSIQNAELHILPGENHNSYIRDNHKLWHLIRPFLAGLQAVD >gi|225002558|gb|ACIZ01000021.1| GENE 34 33086 - 33799 740 237 aa, chain + ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 237 4 237 237 358 80.0 7e-99 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKID GLEVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRT SSANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMT REHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLRNPDAE >gi|225002558|gb|ACIZ01000021.1| GENE 35 33815 - 35725 1697 636 aa, chain + ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 4 634 3 610 610 533 46.0 1e-151 MNKKIRFFQSIHFKIAIVFILLLVVTLEMIGAYFVKTLEQQNIEQFKTSVNVDSYIQDKL AADLLRTDTDNANDDIKSTLSQADIANSADLQVIDAKGTIRGDSDINAQTNVGQKSANSN IKNTLYSGQQYEGYEYRERTGSTYYKVVPIKNPNATGDNNSVIGAIAISASMEQAYDSIN KIVGIFLISSLVAGLLGTLLSIVISRTITRPIDEMKKQAIRMARGDYSGQVRIYGQDELG QLAVAVNNLSVRVEEAQEASEAERRRLDSVLAHMTDGVIATDRRGNVIIINQTALSFLNT KNEDVIGVSILKLLNIAKDYTLRDLLEHQTELLLDFSEQLDHDLILRVDFSLIQRETGFI SGLVAVLHDVTEQQKIDRDRKEFVSNVSHELRTPLTSVRSYIEALSDGAWKDPKLAPQFL NVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTG EARTAQPLPQPDGQKKRYSIKREITHEDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGVIT ARLFQTHDHVILSISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVEA LHGRIWVDSQEGRGSTFYISLPYEPITDGGDDWDEA >gi|225002558|gb|ACIZ01000021.1| GENE 36 35715 - 37118 1063 467 aa, chain + ## HITS:1 COG:lin0317 KEGG:ns NR:ns ## COG: lin0317 COG4863 # Protein_GI_number: 16799394 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 12 432 12 432 440 64 20.0 4e-10 MKLSSWILRVSLIAMVILSLVFTSLIWRNPSRLERRSTSNVQVTTENDPNVKKMEGNVYL PNQVYYTHRGQKQLLFKANANIGHEVQQAMADWHMTQVKAVGKVSPANYETYLEQDGNLQ LIYQDVMSFKQFEQWFFSKQDQIKASDFHFNRVLVNLDGAVKKLTLINDATRRVYEAKLA NVSQDQLQKLVTTQVTRAFPIEEKRLGNHEVAFFTQPIKLPPYAYLMDQQSANYYVSLLM PSKTASNVDAREIGDSTLYTAGSTRRMTADSGTGAIEFENYTATFPDSGLTNFLHATFKG LSDLQMTNLASMRYFQYDASRGEVVYKTYAQGFPIFNVDQKGDVTVRYTQTSQEINFSNT NLTVPIPTNQPAQTLPATATVVNQLVAAGYRASQITDILIGYQWTGSSNDQQVVDLQPTY YVEMKGEYRDYQSWLNHSSDASANAASGQTATPSNDDSSASESEPTQ >gi|225002558|gb|ACIZ01000021.1| GENE 37 37174 - 37971 757 265 aa, chain + ## HITS:1 COG:lin0318 KEGG:ns NR:ns ## COG: lin0318 COG4853 # Protein_GI_number: 16799395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 264 1 262 279 97 25.0 2e-20 MDFRRIEWIFLVVFVGLNIFLGISYFQAQQVDLATIKSGDAATITDITRDQIKLPRLSKK TPKGDYLASQANSALTAAHTNLVKQQVSISEGDYQELQANLDVPITLKKNQELRQMKTFV KNNVYHGKEYEYAPALSNDERVVFAQHPQAGLIYDRRAAVTLHVSDNRLVSYTQTYLTKL NILRDHLSLMSEQDAVIALYRDNDIPNNSAIVSTQLAYSYLLDAKGSTVYVPAWYIGVKN RSTGNVTVKRVNAITRTVMKNRNDS >gi|225002558|gb|ACIZ01000021.1| GENE 38 38026 - 38862 567 278 aa, chain + ## HITS:1 COG:SP1225 KEGG:ns NR:ns ## COG: SP1225 COG1235 # Protein_GI_number: 15901087 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Streptococcus pneumoniae TIGR4 # 13 275 3 266 269 316 58.0 3e-86 MVKSLEMVIVGEDFGMRVSVLASSSSGNATYIETPGHKVLVDAGLSGKKIEALMKSIGRD LTDVDSVFITHEHSDHVRGVGVLARRYPQLNVYANAKTFAALPKSVGKIPEAQLRLFDMG TTLTLGDLDVESFGVSHDAAAPQFYQFHHDGKAFTILTDTGYVSDRVAGTIRDADAYVME CNHDLEMLRTGPYPWPLKQRILSDQGHLSNEDGADALMDVIGLRTKRIYLGHLSPHNNNK PLAHLTVASLLAQQGLAVDHDFHIYDTDPAVADPLFVV >gi|225002558|gb|ACIZ01000021.1| GENE 39 39302 - 40636 1403 444 aa, chain + ## HITS:1 COG:lin0320 KEGG:ns NR:ns ## COG: lin0320 COG0265 # Protein_GI_number: 16799397 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Listeria innocua # 64 435 150 492 499 271 48.0 2e-72 MDNGSHNFQETPQDQKPQRSAEKPKKNGLKQTAIVAVVAALIGGGVGGGTAYWAINHTTS LGVTDTSGKAGTTKISNVSVNQSSASEQAFAKVKGAVVSVVNMQKAESNSDGLDTFGGLE GIFGQDNQNNSSSSSSSSSLEEASEGSGVIYQKKDGKAYIVTNNHVVSGSDKLEVILSDG TKLTASLVGTDSTSDLAVLTIDGSKVNTVASFGDSSKIEAGQTVLAIGSPLGSQYATSVT QGIVSAKSRTVDVTDSSGNTTGQATVIQTDAAINSGNSGGPLINLSGQVIGINSMKLSGS SSSSSEGATIEGMGFAIPSDEVVSIINQLVENGKVVRPALGIEVRDLSTVSASQQKSVLK LPESVTGGVVVGGFTSGSSAKAAGLKQYDVITALDGVSVSNTAALHTQLYKHKVGDTVKL TLYRKGEQQTVSIKLSQTTSDLKN >gi|225002558|gb|ACIZ01000021.1| GENE 40 41204 - 41632 441 142 aa, chain + ## HITS:1 COG:no KEGG:LC705_02796 NR:ns ## KEGG: LC705_02796 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 9 142 1 134 134 253 100.0 1e-66 MYLKGWSVMKITIKPAAVTYLNEHVAKDQHLFLALDDGSSKYSKLGGSCAIGNKYQIVVT NQDDQDYALPLENDAGLKLTTGDPETDYFGSGLTLDFKNASLALRDDSGILDGAVTLNQV TSTPQNDDKRREEMKSLGGKIC >gi|225002558|gb|ACIZ01000021.1| GENE 41 41793 - 42233 485 146 aa, chain + ## HITS:1 COG:CAC3714 KEGG:ns NR:ns ## COG: CAC3714 COG0071 # Protein_GI_number: 15896945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Clostridium acetobutylicum # 3 145 12 150 151 84 36.0 9e-17 MANDLMRRNDWLNDPFFNDLGRHIFDSFTPTRGVDNSRLLKTDIQENDESYVVKVDVPGI EKQNINLSYDHDVLSIAVKHEEQADHSDKEGNMLMSERSYGRMSRSYRLPSVDEGKISAK VSDGVLTIDLPKMAAEQQEGHQITID >gi|225002558|gb|ACIZ01000021.1| GENE 42 42684 - 44510 1879 608 aa, chain + ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 3 592 2 593 593 524 48.0 1e-148 MKKNWQLMMVLVVSAVALVFAFILKQPLIAQGLITVMGSIIALIMFGGMVKTIRSGNFGV DLLAITAVVATLAVSQYWAAMIVLLMLTGGDALESYAATKASSELKQLLENAPTTAHRLV DGHVEDVDVDAVQVGETILVKPQEVVPVDGTVLEGESLVDEASLTGESKPVAKNAGSDIM SGTINGDSALTVKVTQRAEDSQYQGIIKLVKESEARPAHFVRMADRYAVPFTLVAYVIAG LGWVLSGDPVRFAQVLVVASPCPLILAAPIAMVSGMSRNSRNGIIVKSGTTLEKLSDART FAFDKTGTVTRGILKVATVLPQAGFSQDELLNLAASAEGQSTHILARSLTDAVPAADRLP ASEVSEATSFGVYATVDGHKVKVGKAEFAGAKETLDTTAVYVNVDGQYAGAITFSDQIRP EAKETMTKLHELNDANLIMISGDQQSIADKVAREVGIDQVYAEQLPQQKIEVLDNVPKDD RPVVMVGDGVNDAPSLAIADVGIAMGAHGATAASESADAVVLRDDLAKVAAATLIAKETM VIAKQSVLIGIAICTGLMLIASFGVIPTIIGAMLQEVVDTVTILYALRARNGLHRQALVD PVRAEARA Prediction of potential genes in microbial genomes Time: Wed May 25 19:32:33 2011 Seq name: gi|225002557|gb|ACIZ01000022.1| Lactobacillus rhamnosus LMS2-1 contig00025, whole genome shotgun sequence Length of sequence - 159458 bp Number of predicted genes - 154, with homology - 151 Number of transcription units - 78, operones - 32 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 28 - 2073 1409 ## LC705_02793 hypothetical protein 2 1 Op 2 . + CDS 2149 - 3759 1445 ## COG2211 Na+/melibiose symporter and related transporters + Term 3858 - 3900 5.2 - Term 3846 - 3888 -1.0 3 2 Tu 1 . - CDS 4101 - 6173 1472 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 6264 - 6323 5.7 - Term 6354 - 6392 6.1 4 3 Tu 1 . - CDS 6416 - 7624 871 ## LC705_02790 hypothetical protein - Prom 7720 - 7779 5.9 + Prom 7679 - 7738 4.7 5 4 Tu 1 . + CDS 7974 - 8174 61 ## + Term 8197 - 8247 10.8 6 5 Op 1 . + CDS 8555 - 10165 1336 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 7 5 Op 2 . + CDS 10190 - 11518 899 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 11595 - 11665 18.5 8 6 Tu 1 . - CDS 11668 - 12525 737 ## LC705_02787 hypothetical protein - Prom 12698 - 12757 6.5 - Term 12566 - 12606 8.2 9 7 Tu 1 . - CDS 12775 - 13875 962 ## COG0471 Di- and tricarboxylate transporters - Prom 13904 - 13963 5.1 + Prom 13918 - 13977 5.1 10 8 Op 1 . + CDS 14023 - 14502 563 ## COG1576 Uncharacterized conserved protein 11 8 Op 2 . + CDS 14546 - 14992 465 ## COG4405 Uncharacterized protein conserved in bacteria + Term 15014 - 15067 9.6 + Prom 15177 - 15236 2.2 12 9 Op 1 . + CDS 15265 - 15936 509 ## LC705_02783 hypothetical protein 13 9 Op 2 . + CDS 15989 - 16468 354 ## LC705_02782 GNAT family acetyltransferase 14 9 Op 3 . + CDS 16531 - 17280 761 ## COG2365 Protein tyrosine/serine phosphatase 15 9 Op 4 . + CDS 17294 - 17824 291 ## COG0241 Histidinol phosphatase and related phosphatases 16 9 Op 5 4/0.087 + CDS 17828 - 18328 452 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 17 10 Tu 1 . + CDS 18525 - 19148 234 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Prom 19163 - 19222 3.5 18 11 Tu 1 . + CDS 19337 - 19582 280 ## LC705_02777 hypothetical protein + Term 19639 - 19687 7.1 - Term 19627 - 19675 8.0 19 12 Op 1 . - CDS 19690 - 20019 281 ## LC705_02776 hypothetical protein 20 12 Op 2 . - CDS 20099 - 20224 58 ## gi|229551277|ref|ZP_04440002.1| hypothetical protein HMPREF0539_0533 + Prom 20644 - 20703 1.8 21 13 Op 1 . + CDS 20836 - 22449 188 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Prom 22635 - 22694 2.9 22 13 Op 2 . + CDS 22736 - 22990 194 ## LGG_02788 AbrB family transcriptional regulator + Term 23167 - 23234 14.0 + Prom 23078 - 23137 3.5 23 14 Tu 1 . + CDS 23269 - 23586 419 ## COG2076 Membrane transporters of cations and cationic drugs + Prom 23615 - 23674 2.0 24 15 Tu 1 . + CDS 23761 - 24507 676 ## COG0500 SAM-dependent methyltransferases + Term 24522 - 24573 1.0 - Term 24492 - 24534 4.1 25 16 Op 1 2/0.174 - CDS 24635 - 25066 335 ## COG0789 Predicted transcriptional regulators 26 16 Op 2 . - CDS 25117 - 25974 775 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 26003 - 26062 4.9 - Term 26005 - 26036 1.8 27 17 Tu 1 . - CDS 26183 - 27115 633 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B - Prom 27187 - 27246 3.7 + Prom 27179 - 27238 5.5 28 18 Tu 1 . + CDS 27263 - 28330 771 ## LC705_02768 metal-dependent hydrolase + Prom 28555 - 28614 4.6 29 19 Op 1 13/0.000 + CDS 28648 - 29478 910 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 30 19 Op 2 1/0.348 + CDS 29471 - 30307 1004 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 31 20 Op 1 . + CDS 30417 - 30902 589 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 32 20 Op 2 2/0.174 + CDS 30932 - 31846 826 ## COG1737 Transcriptional regulators 33 20 Op 3 . + CDS 31755 - 32675 787 ## COG2103 Predicted sugar phosphate isomerase 34 20 Op 4 . + CDS 32659 - 33684 521 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Prom 33686 - 33745 2.5 35 21 Tu 1 . + CDS 33814 - 34599 266 ## COG2367 Beta-lactamase class A + Term 34628 - 34691 4.2 + Prom 34653 - 34712 6.4 36 22 Tu 1 . + CDS 34760 - 36049 1024 ## COG0477 Permeases of the major facilitator superfamily + Term 36075 - 36124 11.1 + Prom 36145 - 36204 5.0 37 23 Op 1 10/0.000 + CDS 36276 - 37391 1050 ## COG3839 ABC-type sugar transport systems, ATPase components 38 23 Op 2 38/0.000 + CDS 37381 - 38313 870 ## COG1175 ABC-type sugar transport systems, permease components 39 23 Op 3 14/0.000 + CDS 38310 - 39125 841 ## COG0395 ABC-type sugar transport system, permease component 40 23 Op 4 . + CDS 39122 - 40495 1203 ## COG1653 ABC-type sugar transport system, periplasmic component 41 23 Op 5 . + CDS 40590 - 41000 365 ## COG0394 Protein-tyrosine-phosphatase 42 23 Op 6 . + CDS 41057 - 41755 629 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 41788 - 41846 17.0 - Term 41776 - 41834 7.1 43 24 Op 1 4/0.087 - CDS 41882 - 43315 963 ## COG1488 Nicotinic acid phosphoribosyltransferase 44 24 Op 2 1/0.348 - CDS 43349 - 43909 518 ## COG1335 Amidases related to nicotinamidase - Prom 43932 - 43991 5.8 45 25 Tu 1 . - CDS 44022 - 44732 650 ## COG1051 ADP-ribose pyrophosphatase - Prom 44769 - 44828 3.4 46 26 Tu 1 . + CDS 45728 - 51112 4458 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases + Term 51138 - 51178 2.5 + Prom 51304 - 51363 5.8 47 27 Op 1 . + CDS 51444 - 52013 303 ## LC705_02749 transcriptional regulator xre family 48 27 Op 2 . + CDS 52027 - 52239 142 ## LC705_02748 hypothetical protein + Term 52252 - 52312 16.4 + Prom 52246 - 52305 3.8 49 28 Tu 1 . + CDS 52365 - 52994 705 ## COG1051 ADP-ribose pyrophosphatase + Prom 53086 - 53145 3.8 50 29 Tu 1 . + CDS 53172 - 53672 435 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 53687 - 53735 4.1 51 30 Op 1 . - CDS 53738 - 54772 716 ## COG3669 Alpha-L-fucosidase 52 30 Op 2 . - CDS 54798 - 56000 982 ## COG0477 Permeases of the major facilitator superfamily - Prom 56129 - 56188 8.5 + Prom 56093 - 56152 6.7 53 31 Op 1 . + CDS 56362 - 57081 824 ## COG2188 Transcriptional regulators 54 31 Op 2 . + CDS 57102 - 58421 950 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 55 31 Op 3 . + CDS 58418 - 59380 604 ## COG1446 Asparaginase 56 31 Op 4 . + CDS 59411 - 60307 799 ## COG1940 Transcriptional regulator/sugar kinase + Term 60408 - 60458 3.5 - Term 60396 - 60446 8.1 57 32 Op 1 . - CDS 60508 - 60774 347 ## LC705_02739 hypothetical protein 58 32 Op 2 . - CDS 60824 - 65308 4133 ## COG1404 Subtilisin-like serine proteases - Prom 65344 - 65403 3.6 59 32 Op 3 . - CDS 65406 - 65555 60 ## gi|229551319|ref|ZP_04440044.1| hypothetical protein HMPREF0539_0575 - Prom 65618 - 65677 4.3 + Prom 65989 - 66048 7.5 60 33 Op 1 . + CDS 66164 - 67234 985 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold 61 33 Op 2 2/0.174 + CDS 67258 - 67716 535 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 62 33 Op 3 . + CDS 67736 - 69256 1548 ## COG3037 Uncharacterized protein conserved in bacteria 63 33 Op 4 . + CDS 69329 - 69622 442 ## LC705_02734 PTS system ascorbate-specific transporter subunit IIB 64 34 Op 1 . + CDS 69834 - 70475 692 ## COG0269 3-hexulose-6-phosphate synthase and related proteins 65 34 Op 2 . + CDS 70561 - 71322 536 ## COG1349 Transcriptional regulators of sugar metabolism 66 35 Tu 1 . + CDS 71507 - 72394 670 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 67 36 Tu 1 . - CDS 72461 - 73282 679 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 73314 - 73373 4.8 + Prom 73337 - 73396 3.1 68 37 Tu 1 . + CDS 73479 - 74207 729 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 74286 - 74329 2.2 - Term 74274 - 74317 -0.8 69 38 Op 1 6/0.087 - CDS 74418 - 74678 187 ## COG4115 Uncharacterized protein conserved in bacteria 70 38 Op 2 . - CDS 74671 - 74940 321 ## COG2161 Antitoxin of toxin-antitoxin stability system - Prom 74961 - 75020 2.6 + Prom 75397 - 75456 6.7 71 39 Op 1 . + CDS 75566 - 76366 221 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 72 39 Op 2 . + CDS 76393 - 78261 1608 ## COG3711 Transcriptional antiterminator 73 39 Op 3 2/0.174 + CDS 78262 - 78771 500 ## COG4578 Glucitol operon activator 74 39 Op 4 6/0.087 + CDS 78784 - 79353 642 ## COG3730 Phosphotransferase system sorbitol-specific component IIC 75 39 Op 5 6/0.087 + CDS 79406 - 80521 1203 ## COG3732 Phosphotransferase system sorbitol-specific component IIBC 76 39 Op 6 . + CDS 80549 - 80932 412 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 77 39 Op 7 1/0.348 + CDS 80936 - 81607 600 ## COG0176 Transaldolase + Term 81636 - 81679 7.3 + Prom 81954 - 82013 5.2 78 40 Op 1 . + CDS 82200 - 84071 1354 ## COG3711 Transcriptional antiterminator 79 40 Op 2 . + CDS 84025 - 84402 364 ## LC705_02717 transcriptional regulator antiterminator BglG/PRD-domain-containing protein 80 40 Op 3 . + CDS 84489 - 84848 533 ## LGG_02713 transcriptional regulator 81 40 Op 4 . + CDS 84864 - 85232 361 ## LC705_02715 hypothetical protein 82 40 Op 5 . + CDS 85234 - 86013 778 ## LGG_02711 membrane protein 83 40 Op 6 . + CDS 86028 - 86723 719 ## LC705_02713 membrane protein + Term 86760 - 86823 22.1 84 41 Op 1 1/0.348 + CDS 87001 - 88122 1066 ## COG3964 Predicted amidohydrolase 85 41 Op 2 . + CDS 88119 - 89219 952 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] 86 41 Op 3 . + CDS 89234 - 89998 775 ## LC705_02710 4-hydroxy-2-oxoglutarate aldolase + Term 90072 - 90110 2.2 - Term 90043 - 90079 2.1 87 42 Tu 1 . - CDS 90274 - 90468 145 ## LGG_02706 hypothetical protein + Prom 90729 - 90788 6.3 88 43 Op 1 . + CDS 90842 - 90949 78 ## LGG_02705 PTS system maltose-specific transporter subunit IIA 89 43 Op 2 1/0.348 + CDS 90949 - 91326 354 ## COG2190 Phosphotransferase system IIA components 90 43 Op 3 . + CDS 91395 - 92138 638 ## COG1737 Transcriptional regulators + Term 92172 - 92209 3.9 91 44 Tu 1 . - CDS 92204 - 93070 572 ## COG1396 Predicted transcriptional regulators - Prom 93111 - 93170 6.0 + Prom 92917 - 92976 3.9 92 45 Tu 1 . + CDS 93202 - 94794 861 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 94845 - 94888 4.4 + Prom 94925 - 94984 3.4 93 46 Op 1 2/0.174 + CDS 95033 - 96637 1229 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 94 46 Op 2 . + CDS 96649 - 98034 1239 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases + Term 98111 - 98167 7.0 95 47 Tu 1 . - CDS 98399 - 99475 422 ## COG1609 Transcriptional regulators - Prom 99685 - 99744 6.1 + Prom 99286 - 99345 1.7 96 48 Op 1 . + CDS 99432 - 99698 62 ## gi|229551358|ref|ZP_04440083.1| hypothetical protein HMPREF0539_0614 97 48 Op 2 . + CDS 99680 - 100087 278 ## LC705_02701 PTS system fructose-specific transporter subunit IIA 98 48 Op 3 13/0.000 + CDS 100102 - 100908 471 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 99 48 Op 4 1/0.348 + CDS 100901 - 101740 556 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 100 48 Op 5 . + CDS 101772 - 102263 319 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 101 48 Op 6 . + CDS 102260 - 104380 617 ## COG3345 Alpha-galactosidase + Term 104400 - 104439 6.1 + Prom 104534 - 104593 5.0 102 49 Tu 1 . + CDS 104660 - 107719 1808 ## LC705_02696 polysaccharide lyase family 8 103 50 Tu 1 . - CDS 107561 - 107869 73 ## - Prom 107891 - 107950 2.7 + Prom 107839 - 107898 3.6 104 51 Tu 1 . + CDS 107925 - 108614 785 ## COG0120 Ribose 5-phosphate isomerase + Term 108625 - 108662 -0.6 - Term 108605 - 108657 10.1 105 52 Op 1 8/0.000 - CDS 108731 - 109750 491 ## COG0524 Sugar kinases, ribokinase family 106 52 Op 2 3/0.087 - CDS 109755 - 110408 357 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase - Prom 110453 - 110512 1.8 - Term 110427 - 110482 7.0 107 53 Op 1 9/0.000 - CDS 110528 - 111352 219 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 108 53 Op 2 . - CDS 111386 - 112219 545 ## COG3717 5-keto 4-deoxyuronate isomerase - Prom 112282 - 112341 5.3 - Term 112300 - 112352 18.0 109 54 Tu 1 . - CDS 112463 - 113230 358 ## COG1414 Transcriptional regulator - Prom 113271 - 113330 4.5 + Prom 113338 - 113397 7.1 110 55 Op 1 . + CDS 113454 - 114284 339 ## LC705_02689 hypothetical protein 111 55 Op 2 . + CDS 114344 - 115459 372 ## LC705_02688 glucuronyl hydrolase 112 55 Op 3 13/0.000 + CDS 115472 - 115972 321 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 113 55 Op 4 13/0.000 + CDS 116001 - 116813 640 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 114 55 Op 5 . + CDS 116767 - 117618 607 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID + Term 117634 - 117664 0.2 115 55 Op 6 . + CDS 117704 - 118171 388 ## LC705_02684 PTS system mannose-specific transporter subunit IIA 116 55 Op 7 . + CDS 118171 - 118518 284 ## LC705_02683 preprotein translocase YajC 117 55 Op 8 . + CDS 118457 - 120382 1024 ## LC705_02682 heparinase II/III-like 118 55 Op 9 . + CDS 120421 - 121440 458 ## LC705_02681 hypothetical protein 119 55 Op 10 . + CDS 121455 - 123725 888 ## LC705_02680 subtilisin-like serine protease + Term 123795 - 123832 6.0 120 56 Tu 1 . - CDS 124487 - 126169 1097 ## COG0366 Glycosidases - Prom 126392 - 126451 6.9 + Prom 126334 - 126393 6.2 121 57 Tu 1 . + CDS 126475 - 127194 425 ## LC705_02678 lipoprotein + Prom 127259 - 127318 4.2 122 58 Tu 1 . + CDS 127525 - 127905 244 ## LC705_02677 hypothetical protein + Term 127930 - 127984 14.0 - Term 127915 - 127974 16.8 123 59 Op 1 . - CDS 128023 - 129144 960 ## COG1062 Zn-dependent alcohol dehydrogenases, class III - Prom 129188 - 129247 3.0 124 59 Op 2 . - CDS 129337 - 130359 846 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 130403 - 130462 5.2 + Prom 130381 - 130440 5.0 125 60 Op 1 6/0.087 + CDS 130482 - 131834 1248 ## COG0477 Permeases of the major facilitator superfamily 126 60 Op 2 4/0.087 + CDS 131868 - 133346 1374 ## COG1070 Sugar (pentulose and hexulose) kinases 127 60 Op 3 1/0.348 + CDS 133349 - 133663 327 ## COG3254 Uncharacterized conserved protein 128 60 Op 4 5/0.087 + CDS 133727 - 135007 1260 ## COG4806 L-rhamnose isomerase 129 60 Op 5 . + CDS 135036 - 135926 788 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 135972 - 136014 8.5 + Prom 136074 - 136133 2.7 130 61 Tu 1 . + CDS 136207 - 136470 160 ## LC705_02669 hypothetical protein + Term 136477 - 136536 12.6 - Term 136469 - 136519 3.2 131 62 Tu 1 . - CDS 136563 - 137357 483 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 137386 - 137445 5.6 + Prom 137434 - 137493 4.0 132 63 Op 1 13/0.000 + CDS 137563 - 138042 526 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 133 63 Op 2 10/0.000 + CDS 138064 - 138384 390 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 134 63 Op 3 . + CDS 138457 - 140025 1544 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 135 63 Op 4 . + CDS 140018 - 140254 192 ## LC705_02664 hypothetical protein 136 63 Op 5 . + CDS 140251 - 140979 802 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 141132 - 141192 9.1 - Term 141130 - 141168 8.6 137 64 Tu 1 . - CDS 141211 - 142593 1023 ## COG0477 Permeases of the major facilitator superfamily - Prom 142628 - 142687 6.0 + Prom 142563 - 142622 4.5 138 65 Tu 1 . + CDS 142726 - 143163 421 ## COG1846 Transcriptional regulators + Term 143305 - 143355 -1.0 139 66 Tu 1 . - CDS 143226 - 143657 263 ## LC705_02660 hypothetical protein - Prom 143712 - 143771 1.6 140 67 Tu 1 . + CDS 143675 - 144586 186 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 + Term 144662 - 144706 2.9 - Term 144647 - 144699 7.9 141 68 Op 1 . - CDS 144732 - 146123 1225 ## COG0471 Di- and tricarboxylate transporters 142 68 Op 2 6/0.087 - CDS 146120 - 146692 474 ## COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase 143 68 Op 3 . - CDS 146702 - 148177 1287 ## COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases 144 69 Tu 1 . + CDS 148740 - 148859 86 ## + Term 148931 - 148970 8.2 + Prom 149059 - 149118 5.1 145 70 Tu 1 . + CDS 149145 - 150677 1482 ## COG0554 Glycerol kinase - Term 150676 - 150720 3.1 146 71 Tu 1 . - CDS 150739 - 151491 769 ## COG1737 Transcriptional regulators - Prom 151637 - 151696 5.5 + Prom 151552 - 151611 3.0 147 72 Op 1 19/0.000 + CDS 151640 - 152569 731 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 148 72 Op 2 . + CDS 152573 - 154555 1882 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 154571 - 154633 16.1 + Prom 154640 - 154699 3.9 149 73 Tu 1 . + CDS 154750 - 154983 67 ## LGG_02646 hypothetical protein + Term 155015 - 155075 17.6 + Prom 155246 - 155305 4.6 150 74 Tu 1 . + CDS 155494 - 155949 254 ## LC705_02650 hypothetical protein + Term 155967 - 156023 -0.9 - Term 155954 - 156004 13.2 151 75 Tu 1 . - CDS 156013 - 156714 737 ## COG1811 Uncharacterized membrane protein, possible Na+ channel or pump + Prom 156779 - 156838 5.0 152 76 Tu 1 . + CDS 156939 - 158150 1246 ## COG0468 RecA/RadA recombinase + Term 158170 - 158224 20.1 - Term 158081 - 158129 3.2 153 77 Tu 1 . - CDS 158356 - 158682 308 ## LGG_02642 hypothetical protein - Prom 158903 - 158962 4.0 + Prom 158894 - 158953 3.4 154 78 Tu 1 . + CDS 159044 - 159349 413 ## LC705_02646 hypothetical protein Predicted protein(s) >gi|225002557|gb|ACIZ01000022.1| GENE 1 28 - 2073 1409 681 aa, chain + ## HITS:1 COG:no KEGG:LC705_02793 NR:ns ## KEGG: LC705_02793 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 681 1 681 681 1372 100.0 0 MSKDTFVISRKTDVHTDNMANPVLKNAVDILQRDIQKATTGEADANQITLVLKKDADQKV PDTFTMHYVSPRKVEIVAATTRGLMYGALAVSREVLGIDDFWYFMDTPIKKQSTVSWTDF SQHLPDFQTKYRGWFVNDELLVAAWQDHDSKDYVWDRIYETLLRVGGNLVVPGTDKESRY HRNGARDMGLIIAHHHAEPLGSEMFARVYPTLEASYLKYPELFKKLWRDSILEQRGHEVV YGLGFRGQGDRPFWLDDASHQWTDEEKAKVINDTIKLQYDMVQELDPGAQCSVSIYGELT GLFNKGLLKLPQDVIEIWADNGYGKMVSRRQWDDDPRSPVLTIPNKAHRARGIYYHVTFH DLQASSFLTLLPNSPHFVAEELEKVRKAKMDTLELINVGNVKPHILFIREVARSWRRDYQ VHSEEAIIKDYVSHYYSEAQKEITTIYEDYFKAPIQYGPHDDQKAGDEFATYLIRKVVKA WMGHYPQLEEMKWLTGDVSLDDQLTKVTELIDTKYAEWDRLYRRAVQVYADIMGQQPQRL FYNDMLLGIAVHACSLHALRASIQAYRHYQQAEIVHAFLGADEAVRANDEIIRLRRDNPS PKWVDFFHNDAYSNIELNAIKLRRLRSYLRVLGDGSDEDVWERKYLMEPADARVMLLSNT HLALSDDQIAKKLREQLIDEK >gi|225002557|gb|ACIZ01000022.1| GENE 2 2149 - 3759 1445 536 aa, chain + ## HITS:1 COG:YPO1226 KEGG:ns NR:ns ## COG: YPO1226 COG2211 # Protein_GI_number: 16121514 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Yersinia pestis # 34 515 1 474 498 269 31.0 1e-71 MQNKKGVVHDGWDEYASKSIYHARGKKIGIGRSLGFGVFSMFSISMQGLVGAWLLFFYTT FCGLSAGQGATIFLIGRVADAIASLVMGNISDNIYKYKIGRMFGRRHIFILAAAPSVLFA ITLWVAGMSYWYYLITYVITTVLMSVLQIPWETLPNEMTKDYNERTTLSTTRMVIAGLGN MLAQFVPAQLFRFYPKTSPMPYLIMQIMFSVVTFFLILITYKTTWEHFVTKNEAKKLAAQ ALEDNGGKKSSLKSELRNYFSTFKIKSFRTHMGIYLSSYFASILWSTTFVYYIVFVLGKS TSVSGMLQSLSIVSVPVTILAGYIVTKISPRSLYLFGYSLILISAIDWVFIGLTKPAGIM IWLIVGTLLYEIGLYILYFVPWNVFPFIPDVDTLVTGKNRAGLFASVMVFINQISQGLAS VVAGYLLDVSGFRQSTSGAVSQPASATNMILFIVSGGVGIMILIAMFFASRFHLSKKTFN VLAAELTRLQKGGSMKDVKPDTKRVCEQLTGVPYDSIEFWRRNDQKTSTPADTSTK >gi|225002557|gb|ACIZ01000022.1| GENE 3 4101 - 6173 1472 690 aa, chain - ## HITS:1 COG:BH3702 KEGG:ns NR:ns ## COG: BH3702 COG2207 # Protein_GI_number: 15616264 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 425 684 7 275 279 91 24.0 6e-18 MPSIFNGVPWYDQHQQVVNASGGCLIQENGNYYLFGEYHQPDSITFAGFSRYVSTDLEHW KDTGLALSPQPSGLLGPHRIGDRVKVIQAKTGQYIMLMHTDDERTFDPVVAYATADHLTD TFEFQGPLRYENQTIRMWHIGSFTDDDGTNYLLTHEGDIYRLAADGKTAEAKVISNIAPG TEAPAMFHFNDHYFFLASQKTSWDHNDNIYFTADRLNGPWTPHGPFCPSGTLTYNSQTAF VTLITTAKGTVPLYLGDRHTYPYLNNSTHVWLPLTVNGTELSIPHYWPRWDWYEQDAQPM TFNSLAWTGQTSDASVTLSFYGTNITITGQTSPQGGFAKMTLRDKEGHIRSQVYTDFYSI LTEETVCFRSPTEQPDHYQLLIEAMGIHGDWYDKSRRRYGSDGNHVTISGYSIDNPTDKD TKAAVTYHASKQAFMIHKMGHHWTQSAVARPEGSAYYQWLQSDIGEGELTIGDQQIHLRP GQGILINLHTSYAYHPVTSLWQTSYLSFGGTIIDAMIPGIHTSNSIFFPVLGSEVLGFIH TQMRHRHEHHYQDEHASSIIQDFLTKLKPYTARLKADPTKQKLAEQTLTLLQQHFEEDLT NDQLAEMTNYSVQYMLQTFHELYQTTPRRLLTIYRIIKAKQLLIEQPDLPLLQVALQAGF NSETYMIRAFKRQENLTPGQFRTVVHQLRS >gi|225002557|gb|ACIZ01000022.1| GENE 4 6416 - 7624 871 402 aa, chain - ## HITS:1 COG:no KEGG:LC705_02790 NR:ns ## KEGG: LC705_02790 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 402 1 402 402 447 100.0 1e-124 MKRKHIFQVLVGTLIAGYLTVFYGMRNTIDTSFTQHAVQAATEQTNQLYTSTKRAFPAKN LSKNAVTSTQSKLEQLAQNVDDRDQKKVVLKDKQDADAASHMLTIEETVKTQNGNLAQTA EDGSRANAAYKAIANTKPEFAADYQQQVNQLYKKSLAIAQIQKLYQDQNMQHPKANLSSD SIDLAVNAVENVENQDFAKNVLPLVQVARNSQESNDSNIAMGQNSASSQSKQTDQQTSAS GVEPASGVGTTAAASSQKTPSSSSSQTPSESSQPSSSNPAGSSTSASDDQGQSSSTPAST GSIEPLTTVLSGGLYKTYDDAVAAIKVQGKSVDDMTVKSVTMSDGSYQWTWGPNGDSGSQ ASSSSASSSGSDESSSTGTSSSSSRAASSPSSNANQASSQAN >gi|225002557|gb|ACIZ01000022.1| GENE 5 7974 - 8174 61 66 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVHAQRAGVAESPAERKSVNGPLRVPPKAPQVRGNVLAYVSCRRGVGPGLSVIRNCQMTQ YLGAVS >gi|225002557|gb|ACIZ01000022.1| GENE 6 8555 - 10165 1336 536 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 534 1 547 549 309 34.0 8e-84 MKKQLSLGLSLLGVTILLAACGQSAKAATNRRTLNVAVSTEASSLDPAHAVDATSGGILQ QIMTPLYDHDQSGKIIPAMATKVVKPTNNGKTYTLTLRRDVKWSDGTPVTAKDFVYSLKR IVDPKTKTEFAYQYDAIANYQDIVAGKKSPDTLGVSAPSKYVLKIQLSQPTPYFSSQMTG YYPTNEAAVKRYGKKFGTAADKIVTNGAYKIKHFNTTSDSWDYVKDPNFYAAKSVKINHV HVNVLKDSSTVDNLFATGKLDDAPLSGNLIQKEADNPALSKTPAANMNYLQLNTKNPQLN NVNLRRAISAALDRQALTSKVLQDGSQPAKAFAPKGLATNPTTGKDFTSDAKTPLTYSPT KAKAYLKAALKELHTDSISFTILTSDVGTDKQVGEYLQSQLTKVLPQLKVTVNSLPKMTR IQRSLNGKFDAVLMSWNSTIQDPSDYLNTATADNISNFSKFSDHEYTALMNKVNDTNGQS ATARYQQELAANARVIDVAGYIPVYQSANSRLINTKVGGLHYSMLQPAEYRYAYFK >gi|225002557|gb|ACIZ01000022.1| GENE 7 10190 - 11518 899 442 aa, chain + ## HITS:1 COG:SP0150 KEGG:ns NR:ns ## COG: SP0150 COG0624 # Protein_GI_number: 15900088 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pneumoniae TIGR4 # 20 437 36 453 457 252 35.0 9e-67 MTLPMQDFLTQYLRLQSVSLAAENQIPETAAFLKQQFTDLGATTSRILRTDGANPAVYAV FPGQTAEAPILLFYNHYDVQPAEPLQLWKSDPFELKITATHLYARGINDDKGELAARLAA IARLQAQGGLPCTIKFLVEGGEEQGSPHLDDLLTQYADLLASDFCLWESGGRNEQGKFQI SLGVKGGVAFQMSVKTADFDLHSSFGAVTENPAWRLVQALATLKNAQDEITIPHFLDAIK PLTATQKQLINQADFDYAAFAKNYGITRPATVADDQIKEALYNRPSLTINGLSSGYEGPG IGKTILPHTALAKIDLRLVPDQTPAETVRLVKAALIAGGYPDIEVSDFLGEPPFRTDPDD PRVQTALALARDTYGDDDVQVELNSPGSGPMKYFYDVNHAPIISCGIGNANSTAHGPNEN VAIADYLGFIDYLTQLVTELAA >gi|225002557|gb|ACIZ01000022.1| GENE 8 11668 - 12525 737 285 aa, chain - ## HITS:1 COG:no KEGG:LC705_02787 NR:ns ## KEGG: LC705_02787 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 285 1 285 285 298 100.0 1e-79 MKRRTLFSIIVVTLTAGCFTLFYGMHSMWTDTQSAQAVQAATEEVDTLFKDKAHQLPADQ LSQEKIEAVATKLHAARQKLTEPEYAAKLASAQADVDAAKHMLTVKKAVAQTTTNLSDLK TLTDESHQALSELATQKPEFVQAYQKRVAQLSDQESAVAKIASLFDDPDFKEPKAGLSAS QVQTALAALEHVNNQQFADQMLPIIATAQQAATDDQTTSEASSSESSTSGESSSASQTST SSTPSASTSSQESTSSSASNSESEQSQSVPSNSAASSTSSSGQLP >gi|225002557|gb|ACIZ01000022.1| GENE 9 12775 - 13875 962 366 aa, chain - ## HITS:1 COG:L20481 KEGG:ns NR:ns ## COG: L20481 COG0471 # Protein_GI_number: 15673760 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Lactococcus lactis # 41 360 55 392 392 118 30.0 2e-26 MIVIQRLIRDRVLQITALLVVISLFIGRPKASDISFATLWSILAMMTVIQIFEHLHILDY WAYRLTSRANNTRQLTWWFIFLAIFASMFLSNDVTVLTLVPLYLRVAKKYQLPEILPVTL IGMAANFGSAFTPFGNTHNIFLMHQFEIDLQQFFSWSIPLLGCSFLVLVLLSLFLRNVPV PKVPTEHIHIQMRPTLFAIAVACVVFAGVIGVVPAWLGAILAIGLSVALDPKDMKDVDYA VVLTFAGFFIIVSVVRQIPWVTHFLSSLINSEPSVYFSSIITSQAISNVPSTVLLARFTG YVEALFYGSNIGGVGTLVGSMANLLVFKQYMIYGSRPHARFFVGFTIFNLIGLLILGCAG YWLTIR >gi|225002557|gb|ACIZ01000022.1| GENE 10 14023 - 14502 563 159 aa, chain + ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 1 159 159 197 67.0 5e-51 MNIKIIGVGKLKEKYFRDGIAEYLKRMDKFAKVKIVEVADEKAPENLSEAEMADVKAKEG DRILNKIKDKEWVIALAIEGKQRPSEVFAKEIADLGTYGHSDITFVIGGSLGLSPAVMKR ANDTLSFGKLTMPHQLMRLVLMEQIYRAFMINIGSPYHK >gi|225002557|gb|ACIZ01000022.1| GENE 11 14546 - 14992 465 148 aa, chain + ## HITS:1 COG:SP0796 KEGG:ns NR:ns ## COG: SP0796 COG4405 # Protein_GI_number: 15900689 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 148 1 146 146 132 49.0 3e-31 MTPEAYFTKAKQALNLPAPTTLQSAYQFGAEADKLAALVLAGKKTAAASARDLYAADEPL PQVGAYGVILNGADEPVCVTYTDAVEVQPFLAVSADHAYREGEGDRSLAYWRAVHLAFFK NEYAAEGKQFDPETARIVLESFHVVYPL >gi|225002557|gb|ACIZ01000022.1| GENE 12 15265 - 15936 509 223 aa, chain + ## HITS:1 COG:no KEGG:LC705_02783 NR:ns ## KEGG: LC705_02783 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 223 1 223 223 433 100.0 1e-120 MQMSEKLELHVKAAIAQALDSGDHMISFYRARKSQSMYVILGHSQNQYLPIRVSNHRSFS GFQKVPTFVLRSQEQLTADLTAFLKTAPWLTFCYRDFFVLSLVKYGHHHRTTFQIDDSYA TFSQESQAMIFYQLIQLGKRPRVMMNGLSADLNQALGQLYGTDLIGSFTSQKSLLMYLTE GGRRLLDIYACQYIEQFMEDYHETDWHNLQLPAACLASEPDQD >gi|225002557|gb|ACIZ01000022.1| GENE 13 15989 - 16468 354 159 aa, chain + ## HITS:1 COG:no KEGG:LC705_02782 NR:ns ## KEGG: LC705_02782 # Name: not_defined # Def: GNAT family acetyltransferase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 159 1 159 159 317 100.0 7e-86 MLNIRRFRSEDAQEVAAVVAQTLRISNRADYSQAYLEASIQRMNPTFFIEKAKQTHFYLV CDADKIVGTGAIGPYWGSETEFSFFDIFVLPAYQKRGIGKLIIQTLEHDPYFKKAHRVEI PASITAVNFYRHMGYAFKNGDATVDDQQLYRLEKFPQRH >gi|225002557|gb|ACIZ01000022.1| GENE 14 16531 - 17280 761 249 aa, chain + ## HITS:1 COG:L87497 KEGG:ns NR:ns ## COG: L87497 COG2365 # Protein_GI_number: 15673818 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Lactococcus lactis # 4 247 2 244 248 156 40.0 3e-38 MEKITNFRSLGGYRNANGQAVKAGLIYRSGQLFELDEAQEHYLAKDLGIKQIVDMRSADE RAQFPDTVWPGADYAVLDILKDATANNASLGRMITEQGSVRENMLATYEQLAVSSSAQTG YRALIQALLVPDRPTIFHCFAGKDRTGVGAAIILEILGVSDQDIMADYLRTNQERKKANE EILAGLKKQGSGEQKLQAIGEALTVDAAYLQRFFQVVTEHFGSFDQYLHEGLQLSPAEIN RFRDLYLTK >gi|225002557|gb|ACIZ01000022.1| GENE 15 17294 - 17824 291 176 aa, chain + ## HITS:1 COG:RSc0523 KEGG:ns NR:ns ## COG: RSc0523 COG0241 # Protein_GI_number: 17545242 # Func_class: E Amino acid transport and metabolism # Function: Histidinol phosphatase and related phosphatases # Organism: Ralstonia solanacearum # 4 146 6 158 199 73 33.0 2e-13 MPIKIVFIDRDGTIGGDGHFTPIRQFVPFAGSVAGIRALKMAGLQVFALTNQTKIAAGQL DEAALRRSLFKLGCSDAFICPHAENAGCTCRKPKTGLIGQAHLKYHFKNQEAVIIGDSYR ADMQCADNAGILGIHVATGRGSAGRQDVVGNYVECADLAAAAAWILRYNQQEKEAR >gi|225002557|gb|ACIZ01000022.1| GENE 16 17828 - 18328 452 166 aa, chain + ## HITS:1 COG:BH2157 KEGG:ns NR:ns ## COG: BH2157 COG0454 # Protein_GI_number: 15614720 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus halodurans # 14 143 11 147 180 77 38.0 1e-14 MTNIRIQAATPNSDFAAIKQIYYTTWQVAYWDLIPASFLKQLSPASWHPERRWQNTFLAI DDIAGIVGVCSYGPARMAERAGWGELYSIYVLPAFQRQHVGERLLNAALKELDGAYSNDY VRVLDNNHAAQAFYRRFGFTETKTVLEDATKFGTIRELVMVRKPAQ >gi|225002557|gb|ACIZ01000022.1| GENE 17 18525 - 19148 234 207 aa, chain + ## HITS:1 COG:SP0666 KEGG:ns NR:ns ## COG: SP0666 COG0596 # Protein_GI_number: 15900567 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Streptococcus pneumoniae TIGR4 # 1 207 1 205 205 91 29.0 1e-18 MEIILVQGLGQSADVWQPVQKQLRVPSRTFDVFAGLTPNDSLTLSMLNDKLARDLQKNQT PVILCGLSLGAVLTLMQLCHPATKIVGALVSAPQYSPPNRLLMKAQDVMFRFQPDSAFAD LGVTKSQVRTLTDSLMQLDLRAKLATVAVPTTILYGSRDWANRGAAKRLNRLMPQSQLEV LAGGHELNITQPQAFAEAIQQVVERVK >gi|225002557|gb|ACIZ01000022.1| GENE 18 19337 - 19582 280 81 aa, chain + ## HITS:1 COG:no KEGG:LC705_02777 NR:ns ## KEGG: LC705_02777 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 81 1 81 81 108 100.0 4e-23 MFGDVINVLFTSVVILWIVKTYKGKIDHRTKELIAIVIGLIIIGNLAGFLIVQSGSRWAL TYTLSFVFVQWVILWSFARNF >gi|225002557|gb|ACIZ01000022.1| GENE 19 19690 - 20019 281 109 aa, chain - ## HITS:1 COG:no KEGG:LC705_02776 NR:ns ## KEGG: LC705_02776 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 109 1 109 109 218 100.0 5e-56 MQTFYKNRPATVWQISKTNQRPNWVQEAFDQNYLTWLDDRLRIVMAGLYSPMIPSLQNEK ADIFHDHGVMFGITSIGYLGDYLDVTNHRVVTKEQFSKHYQIHASGTWT >gi|225002557|gb|ACIZ01000022.1| GENE 20 20099 - 20224 58 41 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551277|ref|ZP_04440002.1| ## NR: gi|229551277|ref|ZP_04440002.1| hypothetical protein HMPREF0539_0533 [Lactobacillus rhamnosus LMS2-1] # 1 41 1 41 41 63 100.0 4e-09 MLIYRKLLILTLKKWFKSTTANPFSFSFLVISGYNMATSHQ >gi|225002557|gb|ACIZ01000022.1| GENE 21 20836 - 22449 188 537 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 334 534 15 222 223 77 25 5e-13 MRKYMNKRSLLVCIILSAFSGLMIPFNTWAYSQIFALVSQKRVVVVIETIGFIIFGMIAL STIDWLYQRYLNKNIADFNQNVRVGLIQSNFIETNEEGVSDRTSFLNNDLDLIENNYIRQ AFTLVQSVSTVLFTLVVALRGSVVLTIIFVLFGSVTPFIPKIFKSKIEKKSQSWSSAMGS YVTFMTDLMRNINSVLSYNALSFFLKRGQGVIANGVENRRQRDNVIANSNFAAEALAYTM TYIPIGIGIVMVIKGNVSLAGFVAVQYSSSWIINVFLGIARANSMMNAARPSIAKITSFQ PLDPNLFTSAGSTRTSIPFATLAMDEVDFSYHSENSPSILRDVSFQINSGEKVLLTGPSG AGKSTFINILIGQIKPRKGTVQLKETQGDTVAPLPDMFGVVRQSSSIFTDSIRMNLTLGR EFTDEQILIALKKAGLSEFVRVNGIDYMVAENGTNLSGGEQKRIELARAFLYNKTFLVID EGTASLDPKTADEIHMILLNSPLTILEIDHHIDPKMQRLFNRHLNLSDGTIRDVTEG >gi|225002557|gb|ACIZ01000022.1| GENE 22 22736 - 22990 194 84 aa, chain + ## HITS:1 COG:no KEGG:LGG_02788 NR:ns ## KEGG: LGG_02788 # Name: not_defined # Def: AbrB family transcriptional regulator # Organism: L.rhamnosus # Pathway: not_defined # 1 84 18 101 101 137 98.0 1e-31 MSLSHKKFLEATVTSKGQVTIPAEIRRRSGIKKNTKVRFNMMEDGTVQMRVIKGCKMEGK EELITTIQDLMDKYKTGIDYLKDK >gi|225002557|gb|ACIZ01000022.1| GENE 23 23269 - 23586 419 105 aa, chain + ## HITS:1 COG:L124677 KEGG:ns NR:ns ## COG: L124677 COG2076 # Protein_GI_number: 15672104 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Lactococcus lactis # 1 104 12 115 117 108 71.0 2e-24 MQWFYLVLAGGFEVVWATFMKLSHGFTRLGFALATLAGMILSFGFLALAVKHLPLSLAYP VWTGIGAVGSIIVGVILFKDQLQPATWFFIALLVIGIIGIKVTSR >gi|225002557|gb|ACIZ01000022.1| GENE 24 23761 - 24507 676 248 aa, chain + ## HITS:1 COG:FN0736 KEGG:ns NR:ns ## COG: FN0736 COG0500 # Protein_GI_number: 19704071 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Fusobacterium nucleatum # 5 247 7 251 251 214 42.0 1e-55 MNEEASWLEESHLAMHGWDFSHLKGRCETESLPWNYSEWVQQHLQSSDEWLDMDTGGGEL MQTFKHPVAKTSVTEGWQPNIDLLKRTLVPQGVTLYADPDGQMAQVPDQHFDIVTNSHGG LPIPAIARVLRSKGIFVSQQVGATNNYSLSRFLDPAYVPAFPDNNLPQVLTQLQDHGFEI LKADAAFVKMRFTDVGAIVYYATVIPWEFPNFDVNQAMPKLHQLQDMIASVGSVTTFEDR FIVLARKK >gi|225002557|gb|ACIZ01000022.1| GENE 25 24635 - 25066 335 143 aa, chain - ## HITS:1 COG:lin2740 KEGG:ns NR:ns ## COG: lin2740 COG0789 # Protein_GI_number: 16801801 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 143 1 137 140 164 57.0 7e-41 MNIKKAADLFDLSPDTLRYYEKTGIVPPVHRAASGFRDYQTRDLNWIYLVRSLRRAGMGI DALRQFTQLAKKRESNNGSSLKQVDAAQKAILQNQLIELDEKIVELQQTRKILAYKIATY EDHIGKFKNGEWDAENQEKLWER >gi|225002557|gb|ACIZ01000022.1| GENE 26 25117 - 25974 775 285 aa, chain - ## HITS:1 COG:SA2001 KEGG:ns NR:ns ## COG: SA2001 COG0656 # Protein_GI_number: 15927780 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Staphylococcus aureus N315 # 1 285 1 280 282 317 57.0 2e-86 MQTFTLNNGVEIPALGFGVFQIPQGQTKQAVLEALNVGYRHIDTAQSYMNEAEVGEALAA TKIPRDKIFLTTKIWLSNYGYEATAKSVEASLTKLQTDYLDLVLLHQPYGDVFGSFKALA DLQKAGKIRAIGVSNFNSERLADIVAFQDAPVQVNQIEINPFYQREQDLMNAKARGHVLL EAWAPFAEGKDGIFSNKTLTTIGKKYGKSAAQVILRWNFERGIVSLAKSVKPERMAQNID IFDFALTHEDKAQIATLDTNTSQFFDHNSPDSVDMFVKFLQERDI >gi|225002557|gb|ACIZ01000022.1| GENE 27 26183 - 27115 633 310 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 6 307 5 305 311 248 43 1e-64 MSTEIKQILAAFEKFETIIIHRHINPDPDAIGSQTGLTLLLRAAYPQKTIYTAGPAAPDL AWIGPQQDVPAAAYQHALVVVIDTSNRERVAGSLFERGAMVIKIDHHLEEEPLGAINWVD TNASSASEMVWLLTQHSQRLTLTQPAAAALYAGIIGDTGRFLYDLTTAQTHRAAADLLAT GIDAPAIGRQEDQFPENVGRLIGWALENVHITTNGAGSLIITQSVLQQFGLQYGEEQRAV GNIGKLASIDRWVVFTERQDGKYRVELRGKTKEINTLAVRHGGGGHPLASGAVADDEAEV QAIEKELASD >gi|225002557|gb|ACIZ01000022.1| GENE 28 27263 - 28330 771 355 aa, chain + ## HITS:1 COG:no KEGG:LC705_02768 NR:ns ## KEGG: LC705_02768 # Name: yjhA # Def: metal-dependent hydrolase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 355 1 355 355 685 100.0 0 MKRLLKWVAALIGVVVLAAGGYLIYLFTTYYRLPDDQALKVKHQQSAQFKPGQTYTAMTY NIGYGSYPPSYSFFMDGGKYSRAYSQQAVRKSINGVIKTTQAQQPDIAFYQEIDPDGDRS RHVNEVEMVTNAQRQYANVYGQNYDSAYLFYPFNQPIGKAKSGILTLSKAKVDSARRYSL PVDTDFNKIIDLDRAFTATKTTVANGKQFIMVNIHMSAFTPNVKIQQAQFAKLFKYINHA YQQGNYVMVAGDYNHRLLKNTAEIFHTKDLDETWTHLFPKSKLPAGFYIPTMGLAAAKVP SVRALDQPYKPGKSFVTLIDGYILSPNIKAESVHVVSTGFQYSDHNPVVLKFQLK >gi|225002557|gb|ACIZ01000022.1| GENE 29 28648 - 29478 910 276 aa, chain + ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 257 1 254 267 214 48.0 1e-55 MAISAFALIFLTIYVGLAQLDALSLKIGLFSPVFGGAVTGLVMGDLKTGLIVGATLQLAT LGVATYGGATIPDFLSGSIMGSAFAIMAGRGAAYGIGLAIPIGLLLTQMDILARMTNTIF QHHADRLAAKGDYKGVERNNLYGIIPWTVSRMLPVFVGLFFGSAVVKAINAWIPTWLMTG LKTAGIILPAMGIAILMRYLPIKRYFPYFILGFVLMAYFAKSFSLLGTALVGFVFAALHV LDANERKHNGNGGNGPSKPDNGGSGDSDDEEVEIDV >gi|225002557|gb|ACIZ01000022.1| GENE 30 29471 - 30307 1004 278 aa, chain + ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 9 267 16 271 275 199 42.0 4e-51 MSELKLSKLTKKDLKQIFIHNVLGLQLGWNYEKMQGLGYAYSVMPALKRLYKDDPAKMKQ ALNMEMGFFNTTPQMAHLIVGADVALQDQLGMNDENEKAITGLKTGLMGPFAGVGDTIFV AIYNAIIYSITAYLALSNQPIGLLIPVIGCLVILWVRWKLFNVGLAQGTRLATTFADSMA IFTEGASILGLTVVGAMIPAVINYKLDLTYKVGKVTMNVQDMLDKIMPALIPLAIALFSY WILGRKHMNSTRLIFVLILIGMVLGNLGAIFGWIGSLV >gi|225002557|gb|ACIZ01000022.1| GENE 31 30417 - 30902 589 161 aa, chain + ## HITS:1 COG:lin0021 KEGG:ns NR:ns ## COG: lin0021 COG3444 # Protein_GI_number: 16799100 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 7 159 10 162 162 132 47.0 4e-31 MTIVAARVDERMIHGQVAMVWTNTVGANRLMVVNDAVVRDDMAIQGLKIARPAGKKLAIS SVAKAIENLQNGKFAADQVFVITRNIPDMAKLIDGGVPITSFNVGNLSEKPGSKKIKPSV ALTADDIAMIRRLLKQGITITAQMVPNESKTSIATFIDKVE >gi|225002557|gb|ACIZ01000022.1| GENE 32 30932 - 31846 826 304 aa, chain + ## HITS:1 COG:STM2572 KEGG:ns NR:ns ## COG: STM2572 COG1737 # Protein_GI_number: 16765892 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 2 268 12 281 282 115 28.0 1e-25 MPQLSPVNRALADYVLTDAEAFIAQTTAQIARASGVSAASVIRFVRLFDYPDLQSFKLAL VRDTQAPALTPLDPLVQDDDDLPTMMRKLSQTAIAAVRDLPDELDQAAVQEAITTLRHAR HIYLVGMSASALVAQDLYLKLIRAGYLAIFDADAHTALERVYYTTAADAVVVFSYSGLTK EVVLAAQQARRNQTPVIAVTRAEPSPLRDAASCVIALPPTEPLLRIGAVTSMFTETYVAN ILFLGVVHGEIKQTEQNYRATSHLTGALKIRGDKYVNRRLNNRATKSRQHAHRHHDDAGN RGAD >gi|225002557|gb|ACIZ01000022.1| GENE 33 31755 - 32675 787 306 aa, chain + ## HITS:1 COG:STM2571 KEGG:ns NR:ns ## COG: STM2571 COG2103 # Protein_GI_number: 16765891 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Salmonella typhimurium LT2 # 1 295 1 295 297 263 53.0 3e-70 MSIADLTTEQRNPASMHIDTMTTPEIVALINHEDAKIAPAIATQTAQIAAAIDEASQRYN RGGRLIYAGAGTSGRLGVLDAAELVPTYGIPPERAVGLIAGGMGAMFKSVEGAEDSAELA EHDLRKLNLNANDTVIGIAASGRTPYAIGALTYAQQVKALAISVTCVAASLLADHADIAI APVVGPEVITGSTRMKAGTAQKMVLNMLSTGVMIRAGKVFGNLMIDVLPTNAKLVDRAQR IIAETTGVSATRAASLLEAAAHKVPVAIVMAKTGLDAAAATQVLAAHDGVISDVLTAWEA EHGKSL >gi|225002557|gb|ACIZ01000022.1| GENE 34 32659 - 33684 521 341 aa, chain + ## HITS:1 COG:lin2030 KEGG:ns NR:ns ## COG: lin2030 COG1680 # Protein_GI_number: 16801096 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 18 333 13 326 335 173 33.0 3e-43 MAKVSESQSLLAPITAAIQQQAVCGVAFSVVGADENAVHFLGFQGTGADHLPLMPQNRYD LASLTKVVGTTTRLLQLLLAGKIQLDQPIGSLVSGLRYPQLTIEQLMLHRSGLPADVPNV HALDQAGLIQAVKTMAAVVPPDTTTLYSDLNFILLGWAIAAVDGSLAASLHQHVFAPLGM QATGYCPQAVAPSDFVPTENVPERGGVLRGTVHDHKAFLLDGVSGHAGLFSTLGDLTTFT RLLAGLPVSHGEKVLPPAAFSLLERYCVGGRTLGWRCWAQGRHQYWHTGFTGTSIAFDRD TQRGFVCLTNRIYPSRTHRAWLRIRRELLTQFFGIETSWPD >gi|225002557|gb|ACIZ01000022.1| GENE 35 33814 - 34599 266 261 aa, chain + ## HITS:1 COG:lin0199 KEGG:ns NR:ns ## COG: lin0199 COG2367 # Protein_GI_number: 16799276 # Func_class: V Defense mechanisms # Function: Beta-lactamase class A # Organism: Listeria innocua # 12 246 6 249 257 94 30.0 2e-19 MAHDHLIAQLDQLQQQFGESHALLLADERQVLFGTRTDVLFPAASLIKLGIAAYVKAQAQ ADSSQWQRKVVLPRPVGGAGVLRFMADSSWCVRDLVTLMLMVSDNLAANALLKTYGLTTV ERWLDQQFPGAKLNRSLMQPHTDNDNWISAAATWRLLRSLLTPPCRPADGDWCARALRHQ QNRTKLLLAPTMKNFVGWTAGKTGELPNCEHDAACFAAEGEQLYAVVLTTFDHQREAAMR FNQQVGALIVDDFQQRRNRLH >gi|225002557|gb|ACIZ01000022.1| GENE 36 34760 - 36049 1024 429 aa, chain + ## HITS:1 COG:TM0342 KEGG:ns NR:ns ## COG: TM0342 COG0477 # Protein_GI_number: 15643110 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Thermotoga maritima # 29 406 19 394 413 72 22.0 2e-12 MQVAHATSPVLITDRESNLQIGKDFTSNLIGSLSGGMFSFGMGLMLLNQTHLAISFGLST IVGPLVSLLLFVPMGSIVDRYPHRSILIVSNLVRLLGLGLFAWALPGFSGVQKLVPVVLF AIVDYICSDFSSTAYAASVHELVNERKIQKLSSLTSTAGSISSIFSPMLGLGLYTLAGFE AFIFVEMVSSTVSFLIMLTMKFHVTKRQPTAKNAAASRPLAMFKQGMAYVKTRPLVKGVI MVGVVLNFSFTSVTVGMPFVITNTLHLGSAPIGYLETGSAIGILIGSLFMSTISGEKRIR LKILGPVLADCVLLIALGGVFNFAKTASGVTIPGTILMVVLGFLIVIPNIVIQVEIQKTV PTSFLGRVNTTLMTINNSVTPVATFFYTFLFQNIAKNYLVFVYSGIVALLYMIAITPRIL RVFVQEGIE >gi|225002557|gb|ACIZ01000022.1| GENE 37 36276 - 37391 1050 371 aa, chain + ## HITS:1 COG:TM1232 KEGG:ns NR:ns ## COG: TM1232 COG3839 # Protein_GI_number: 15643988 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Thermotoga maritima # 3 359 4 355 355 315 44.0 1e-85 MSIRLANVSKDFGNTKVLSDISVEIEPGEFFVMVGPSGSGKSTLLRMIAGLTSVTDGRIY FNERDVTDLPPKDRKLAMVFQNYALLPFMNVAQNVRFGLENQDLTDDEKNKRVDWALDLV HLTDLRERKPKELSGGQQQRVSLARALATKAPVVLMDEPLSNLDAQLRTEMREEIARLHR EIGMTLIYVTHDQVEAMTMGDRILVLDDEKIQQLGTPLDLYNHPANEFVAKFIGSPEMNL LPITVSDEGDRFSIGDTFWTDNAFVLPFDLPAGSYHLGIRPEKLVPVSIANPDTITAKVK SLQQLGNDTLIFCDFDGQSLVSRVPEQFTVAVGAELNLLLPANADEWHLFNIDDGERIAV APVKEAAAYGA >gi|225002557|gb|ACIZ01000022.1| GENE 38 37381 - 38313 870 310 aa, chain + ## HITS:1 COG:BH1077 KEGG:ns NR:ns ## COG: BH1077 COG1175 # Protein_GI_number: 15613640 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 25 309 30 314 315 223 45.0 5e-58 MELNKELNKSTAKSQGKLAETIRENNKPAFWFLMPSLLILTLFTFYPMIMTVYNSFFATN IRGESAKFVGLGNYLDIFKDPLFLQSLTGTLVYVVAFALATIVLGVILARLATMKLRRIS WFQTAFAGTMGTSAAAASILWLFLFNPSVGLASFALKAMGVTNANLLVDPTGAMIVIVLA SVWMALGFAFLILLSAFQSVPPEYYEVADIAGWSQFKQTLKITVPMISPTLFFLFVVEII DGFKMFAQIDLITGGGPNNATNFLAYKIYQDAFAFHNFGTASAESIVLTVIIALATWVQF HFTERKVYYA >gi|225002557|gb|ACIZ01000022.1| GENE 39 38310 - 39125 841 271 aa, chain + ## HITS:1 COG:BH1078 KEGG:ns NR:ns ## COG: BH1078 COG0395 # Protein_GI_number: 15613641 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 10 270 10 270 270 211 43.0 2e-54 MTHVKHGARYLLLTVVAVILLFPILLGIWASLLPTKDIAAGNFLSTNISLNNYWQAFVTT PIIRYMINSFVTAGLITIGQLVLCTLAAYAFAFMNFRYKKQLFFAFLITMMLPFEAQIIP NFQTVKALGWLNNYAGLTIPFFTSAFGVFMLRQAFLQIPTDLVDFGKYLGLSRLQFLWKI AVPYSRSMLITFSLYTFLTHWNQYLWPLITTFSDDFRPVQVGLKQLQAEDTFANWGMVMA TAIIVLLPTLALLLIGQKFFKRNLNAGGTKG >gi|225002557|gb|ACIZ01000022.1| GENE 40 39122 - 40495 1203 457 aa, chain + ## HITS:1 COG:BH1079 KEGG:ns NR:ns ## COG: BH1079 COG1653 # Protein_GI_number: 15613642 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 26 450 40 458 459 270 36.0 5e-72 MKTTYKKIIAIVAAIVVIFGLGFFFTHQQSASAADNNGRTTITFWHSMNGPNEKVLEGLV DQFNKSQTKYTVKPIYAGSYELSIMKYANTVGSNVSPDLIQSDQANQSMMIGLNSTVPVQ KFIDRDHYDLSQLYPGVTAAYKINGKLASMPFNSSSSVMYYNQSLFKKYGIPDLPLSPTY SDVTKAAVALTQKSKGAVKGMTMQIYGWLPEELVANQNSLVVNHDNGRQAMATSATLNSP EMVKSMNWLQDVIKQNAFQNFGTGSAAGNNQSAAFLAQKVGIFMQSSAMLGQLQTNAKFK YGVTFTPHPDGTKANGVAIGGASLWITKDKPTAVQEGAWQFMKYLMTPKSQATWQLGTGY FAVNQKANQVKSLADAIKKNPALAVPIEQLNQGHINAATAGAFFSNIQEERQNVELAMQQ IYGGADVKKALDEAEADTNTAISKTNSVSGNLLDYKR >gi|225002557|gb|ACIZ01000022.1| GENE 41 40590 - 41000 365 136 aa, chain + ## HITS:1 COG:BS_yqcM KEGG:ns NR:ns ## COG: BS_yqcM COG0394 # Protein_GI_number: 16079631 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Bacillus subtilis # 4 125 6 127 139 162 61.0 2e-40 MPKVYFLCTGNACRSQMAEGFAKKLLGRQWQVKSAGIEAHGLNSLAVKVMAEKGIDISQQ QSKVLNEAELQQADLIVTLCGDARDRCPVTPLTVRRLHWPLADPAAASGSQEAVLAVFRQ VRDQIEAHVRALKADA >gi|225002557|gb|ACIZ01000022.1| GENE 42 41057 - 41755 629 232 aa, chain + ## HITS:1 COG:BS_yqiK KEGG:ns NR:ns ## COG: BS_yqiK COG0584 # Protein_GI_number: 16079474 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Bacillus subtilis # 5 201 4 221 239 137 36.0 2e-32 MTVAIYGHRGYPARFPENSLQGFEYACEHGIDGIETDVQMSADGHLVIMHDERVDRTTDG TGWIADLTRTQLKGMRLANGEHIPSLREALTVLSHYDVMVNIEFKTGKIRYPGIEALTQD YVEQFNMQDRVIYSSFNHDSINVIHTLAPKMKTAWLTSRVLTGATLPSYLEAVHIEHYNS HLNKAQRVWTVDDPLKMKQLMRERYVTGIITNRFEEAMDMRDLVAKEAETPV >gi|225002557|gb|ACIZ01000022.1| GENE 43 41882 - 43315 963 477 aa, chain - ## HITS:1 COG:CAC1002 KEGG:ns NR:ns ## COG: CAC1002 COG1488 # Protein_GI_number: 15894289 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Clostridium acetobutylicum # 4 474 14 487 493 456 48.0 1e-128 MNMNQAMLTDLYEFSMANGYCATLPHEDQAVFDIFYRNVPDHGSFVIAAGLQQVVEALRD FHFEDADIQYLRSLKLYSDTFLDYLKTMKLACTVTALPEGTPVFPREPLLTVQGPLMQVQ LLETLLLNIVNHQSLIATKARRITAAAEGRPVMEFGARRAQGPDASVYGARAAVIGGCAS TSNVLAAQRFNIPAAGTMAHSWIEAFPDELSAFRAWAKVYPDNSALLVDTYDVLKSGVPN AITVFKELKTGGHHPVGIRIDSGDITQLAKQARKMLDDAGFPDAKITASNALDETVIQSL LKEGAPIDNFGIGEKLITSASSPVLSGVYKMAALQVNGQWLPKIKVSASREKTTLPSHKQ VYRLYHRDDQTAFADVIALADENLPAEIAAVNANPLATQTQVTLRDFTAEPLLKPVFPQA QEPLTTDVFTIQKHMRSALSHLPEATQRLVNPDLYPVYLTPKLAALQQKLIDEHHQN >gi|225002557|gb|ACIZ01000022.1| GENE 44 43349 - 43909 518 186 aa, chain - ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 6 186 3 183 183 213 55.0 1e-55 MAHSNEALLIIDYTNDFVADKGALTCGAAGQVLAPHIVALADEFLQQDGWVYLPTDVHTP HDPYHPESKLFPPHNVRGTWGRAFFGSLAPWYAAHKDEERVNMFDKTRYSAFAGTPLDLR LRERKIDTVHLVGVCTDICVLHTAVDAYNLNYQMVVHKNAVAALTPAGQDWALDHFAHVL GAEVTD >gi|225002557|gb|ACIZ01000022.1| GENE 45 44022 - 44732 650 236 aa, chain - ## HITS:1 COG:alr2484 KEGG:ns NR:ns ## COG: alr2484 COG1051 # Protein_GI_number: 17229976 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Nostoc sp. PCC 7120 # 11 235 23 232 248 98 31.0 1e-20 MADEFIAHPLITITNVIWSFSRTTRQLQILLIHRADDPYAGYWALPETTLRVRESADAAA IRLIRDKIGVHVNRGSTEQLATFTDPARTPGERALALTYMTYLPTMPKLRPGYGATDARW FAFSATANDYQLQNGTLTFQLDQQVAHLAFDHARILGVAIRRIRNKLDYQPSILQVLGHT FTLKEAREVYAPFLNTTAAAIDNSNFKKTHQHLFVEVGTAHDRTRSGRPPKLFKLA >gi|225002557|gb|ACIZ01000022.1| GENE 46 45728 - 51112 4458 1794 aa, chain + ## HITS:1 COG:alr4773 KEGG:ns NR:ns ## COG: alr4773 COG1501 # Protein_GI_number: 17232265 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Nostoc sp. PCC 7120 # 230 783 183 749 779 145 24.0 8e-34 MHNGMKTVKDRPRVPRSLLYSSAVLSLTATVVYVSSTVPVTAAKGSEPATSSAVKKASTS MLNIVNVTKQTHYFEVTYSNNLKARVFILANNQFRFYADPSGKFAAPAQSEKGLNAKIFT KEIDASAAKVFAAATLDHNGDGWTIKTDAIAIGFNQANATLQVSKGSKVVMAESQPLEIT NDHATQVLKRGTDQFFGGGTQNGNFTLTGKNVKIENTGNWVDGGVASPNPFYWSTAGYGV VRNTFKPGNYDFGASDDGQVKTTHQENRFDAVYFFDAKPYDLLKDYYDLTGAPAMMPRYG LYEAHLNAYNRDTWVPVSEGTSGAIKFEDGKYYKEYQPGKIPAGQSGIKESLNGELNNYQ FSARAVIDRYQKNDMPLGWFLPNDGYGAGYGQTDTLAGNLQNLKSFADYADQHGVATGLW TQQNLSPVDPANPKPDDRDFAKEVAIGVKALKTDVAWVGSGYSFGLDGLAKADAMMTQVK GDSLRPFAITLDGWAGTQRYAGVWTGDQTGGQWEYIRFHIPTYIGTGLSGQPYVGSDMDG IFGGGNPIVNTRDFQWKAFTPIQLNMDGWGANPKTPFSFDQQTTAINRAYNKQKTMLMPY NYTASAQSVFDGKPMVRGLFLDYPNIPEAYTDLVKYEYLWGDNFLVAPIYQNTAADEKGN DVRNGIYLPNKQQVWVDYYTGKEYRGGQVLNNFEAPIWKLPVFVKKGAVIPTTPAHNTPK AFDQTKRQFQIFPASGKNDFTVYEDDGISKKYLKGAHAQTKVTSELQKDQLTVNVDPLTG DYSGLNPDRTTEFAIRTSGKPAKVTASVGGQTVKLTAVDNLKDFTAGENVYFVNKQYHTN DFLDQLADKSIDQNFLQVKLEKTNVKSNAIKLTVDGINATDDPTTEALPESDEVAVPTEI KQNDQTTTDTTVGIDWKPVNDATSYDVKADGVVYRNLTKPEFLLTPVKSQTKHTFQVRAA TAKAVSKWSNEQTFSSKDNPLRLAVKMSNPQVTAPITGVPIWQGKDNAAHLFDQDLTTMA HSNWFTTPPKQSATPMTITAELDGVYDLDHVTYVPREDGGNGTLSALKVETSLDGIHWHQ AGEGKGWTWDGKDKTITFDKNEKAQYVRFVIPKGTSRGDFVSGRELLLFKRDGSSKAVLG DITNDGRVNEDDQTSLMNYAGLTANIDSDFNGYVQNGDLNRNGVIDAFDINYVMTKLGKT PVTKPDEQAPAGTLALEAEKQTYLPGETITLNLLGKDLANVNSLFARVPLTNPNVELVKV EPTQATAQMVNFSKTRTHGDNSRDLYLIFANEGQQKRLSGDQKLATITLRTKTRMTKAAL SFALSDPMLTNQWGPESLPQAPAPITILPADTSAPDQAKAQLTALIDGVNALDPKLFTAA SWQAVTAQRDKASQVLNVDNVTVDALNQAYADLKHALGKLEADRGVTQDQLKKLIEAAEA LKADQYTAESFAKLTDAVAAAKPVSADANATQAQIQAAIQAISNAWFALEVKQQPQVTTL EQWVKVAANLNAADYTPNSFTQLTTVLDEAKKALTDPTTSAATQQKLADQLQGAIDALVP RADKQSLAALVKATEKLKASDYTASSYAKLQTALKPARLVLSDPNAAQSEVGKQADALMA AMLQLEKQPDKTELVSLITKAAEFKAKAYTDASFADLKTALAQARAVNKDSEASVAKVEA AVANLKAAINHLVKAAPTPEPGKDPHNPPVPTPGPGKDPSTPSNPEPGIPPKDKTPQQHA GFNGESADTHKSTKNRDQMPNAGDRAQPVLAVLGATLIGLLGYVKLRQHHKNND >gi|225002557|gb|ACIZ01000022.1| GENE 47 51444 - 52013 303 189 aa, chain + ## HITS:1 COG:no KEGG:LC705_02749 NR:ns ## KEGG: LC705_02749 # Name: not_defined # Def: transcriptional regulator xre family # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 189 1 189 189 315 100.0 4e-85 MTTSVLGNHLKTLRLTRQLTQAQVAHQLFVSRKTVSTWETGRHQPDLQTVCQLADFYQIT VDELLRPVPSKATKKTSARPVTFLGPALAIMIVGRLGYVARPEMLLLTDFVLGFLGGLLL SWWQQWLKPQVLHGLCVFLAAVLFSLAWQNLFAMAFGLQLVYMATAMTLLLPLIGASLQK LGRTFKTLR >gi|225002557|gb|ACIZ01000022.1| GENE 48 52027 - 52239 142 70 aa, chain + ## HITS:1 COG:no KEGG:LC705_02748 NR:ns ## KEGG: LC705_02748 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 70 1 70 70 90 100.0 1e-17 MKHKGLWITNIVLAIAISGIGITILMRRVDGAGHVETAASRLAALAVLVVFILIIAIVEG IYLLISRRHG >gi|225002557|gb|ACIZ01000022.1| GENE 49 52365 - 52994 705 209 aa, chain + ## HITS:1 COG:BH3089 KEGG:ns NR:ns ## COG: BH3089 COG1051 # Protein_GI_number: 15615651 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Bacillus halodurans # 12 196 13 194 207 132 43.0 4e-31 MPSEDLNLLLGQLQAIAQSGRYYTKDVFDRERYDQLAAITKQLMLQLSDATPEQARLFVD QDTGYVTPKVDVRAVTFIEDRLLLVQERAGGTWSIPGGWADLGYSAGEIAVKETREEAGL TVKPTQLLAVYSVRKRDYAPQSTQDVYKFFIACQPVTQTLKTGVETENVRTFTREEALAL PLSLQRNLPADIEMAFAAHADAGWMTRLD >gi|225002557|gb|ACIZ01000022.1| GENE 50 53172 - 53672 435 166 aa, chain + ## HITS:1 COG:CAC2935 KEGG:ns NR:ns ## COG: CAC2935 COG0454 # Protein_GI_number: 15896188 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 9 165 2 156 156 99 34.0 2e-21 MPTPVHEEVIRPMTAADDAPVAALIRECLKAADLDRPGTVYFDAGLDHLSQFYAAEPKRH YFVATQNGRVLGGVGIAEYDPTHGVAELQKFYVHGDLQGHGIGKRLLQHALDYARQVGYQ SVYLETYHTLKTAVHVYHEFGFTDLPRPLVNAQHQLMDQFLVKKLA >gi|225002557|gb|ACIZ01000022.1| GENE 51 53738 - 54772 716 344 aa, chain - ## HITS:1 COG:TM0306 KEGG:ns NR:ns ## COG: TM0306 COG3669 # Protein_GI_number: 15643075 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Thermotoga maritima # 7 138 23 178 449 94 35.0 2e-19 MNDNVTWFKHAKYGMMIHWGLYSLLAGEYRGESSSAYAEWIQSKFQIPNAEYGKLATAFN PLYFDADQIVALARKCGMQYLVVTTKHHDGFAMYHSQVDRYNVYDATPFHRDVIAELAQA CHHAGLKFGLYYSQDLDWHEPDGGGYKSNDLETAGTTWDNSWDFPDETQKNFDRCFNRKI LPQIKEIMTNYGDIATAWFDVPMTLSEAQSQTIYDTVRALQPKCLINSRLGNGKYDFVSL GDNEIPKDKAAMTQTDVDYNDITGFKPSPLGLYETAGTINDSWGFSYHDQNWKTPRTLFR YKQHLNDFGINYLLNVGLDPLGRVPMMAEENLLAAKALEDEALN >gi|225002557|gb|ACIZ01000022.1| GENE 52 54798 - 56000 982 400 aa, chain - ## HITS:1 COG:SP1600 KEGG:ns NR:ns ## COG: SP1600 COG0477 # Protein_GI_number: 15901440 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 20 395 10 381 383 104 22.0 4e-22 MLSSAHVPEDKRSPLLALGILSISFLMSVSNAVSGTIPLMEKYFSDVSRANVELLIVIPT GGVLLGTVISGLVSNLLGKKYTVIAGLTISMIFGIIPAFIFNYPAILISRAMFGVGMGVF TPLSVSYITDLFPEETRNRLLGWRNSVGAIGDAIMLFIAGFLINISWHTTYLVFLFLLVP IILVMFLVPKRYDYIVSENGKEVEETAKVKPTTNGGVIQLAIVFLFVCLFYSAISLKLAS YMVDNHVGSAAAATHIFGFLVLCSIISGIAFEKIAKWCGKYTVAIFDIVTALAMMAVPFV HSIPALLVLVLAAGFCNGIINPALTARMVHYSPKGSMNFTTSIIIIGINIGFLIAPYFFQ FFGSIIGNADPATMILWSGIFYILLAVYDLVIVKKDRLSI >gi|225002557|gb|ACIZ01000022.1| GENE 53 56362 - 57081 824 239 aa, chain + ## HITS:1 COG:BS_yvoA KEGG:ns NR:ns ## COG: BS_yvoA COG2188 # Protein_GI_number: 16080556 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 4 236 12 241 243 107 28.0 3e-23 MAKFEQVADELSRRVRDGMYTTSQRLPSEYDLAKEFAVSRLTVRKAIELLIRQQLLVKSP GKGTYVMSYTDKVESGRMGLQGFTEAARAYGKKSRTEVLSFGPLDPIPEEIARVLGRDQQ ANKTVDLLVRRRFWDEEPMTVEHVAICHEYIEGLQAHDFEGSLFSLIEKRVPIAYSHQEV EAVLIDPDMIKLLHGKKGDPLLLVHSVTYTADAKPILYDISYYRADKYSFKSTLTRDRV >gi|225002557|gb|ACIZ01000022.1| GENE 54 57102 - 58421 950 439 aa, chain + ## HITS:1 COG:CAC2723 KEGG:ns NR:ns ## COG: CAC2723 COG0624 # Protein_GI_number: 15895980 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Clostridium acetobutylicum # 18 435 16 464 465 239 32.0 8e-63 MKNETLAALYEAQRMTFIQALRHMMQIKSVRGPQQADAPFGRGPRMALTTAVELGKAYGF KTGIVNSAMAYIQWGDDDQHYIGIVGHLDVVYAGETVWYFPPYDLSEKAGRLYGRGILDN KGPSIACLFAMKLLKDAGFQPKRTIRLILGSDEESGSADVPLYLAKEAPPEFGFTPDCKF PVVYGERGIVNFNLRTPITDDSLDKVATITGDQASDHVPDHLQATINNKHYTASGIRAPS NAPELGRNAITTLAKELLDEHAIRGQFANYCRWLVQTLANQHHGEGLGMDFADAASGRLI VTPYQLQKVGSVISLLLAVRYPVTYQEHDVTRALTAAAFPRTQITVIRSMPGILHDKNDP RLAALTQAYEQVTGREGQPVTTTGATYARKMPNIVAFGPSFPGQKGIAHNADEWMDEHDL KLNMMIDMNAMIRLGAMDK >gi|225002557|gb|ACIZ01000022.1| GENE 55 58418 - 59380 604 320 aa, chain + ## HITS:1 COG:CC2359 KEGG:ns NR:ns ## COG: CC2359 COG1446 # Protein_GI_number: 16126598 # Func_class: E Amino acid transport and metabolism # Function: Asparaginase # Organism: Caulobacter vibrioides # 7 288 20 317 327 150 32.0 3e-36 MNETTWGVIATWRMAHDGVKKASQLLQANGTAGDAVEALIKTVEAYPYYKSVGYGGLPNE NGEVEMDAAFMDGDTLAQGAVAGIHQVLHAVSVARALSHDHYNSFLVGQGATQYAQLNGF EMRNMLTDRAKKRWEKRRAELADAKIKPYDGHDTVGAITLAPTGSMAAATSTSGLFMKRP GRVGDSPLSGSGFYVDSDIGGAAATGLGEDIMKGCLSYEIVRRMGEGRTPQEACDEAVYP FIEKLKRRYGKAGEFSLIALDRASNWGVATNVEFTFSVATASQKPVILMANPDPNQTTTI TPVTQAWLDAYEKRIKAPIK >gi|225002557|gb|ACIZ01000022.1| GENE 56 59411 - 60307 799 298 aa, chain + ## HITS:1 COG:SPy1596 KEGG:ns NR:ns ## COG: SPy1596 COG1940 # Protein_GI_number: 15675481 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Streptococcus pyogenes M1 GAS # 5 293 19 298 307 137 32.0 3e-32 MKQYLAIDVGGTSTKYALVSEQGELAEKHKQPTARNSRAEFMAAMAALIHRYQGQIAGVG LALPGVVNQQQGIVKTCAALPFLETMPLAARLKDAAHLNIPVVIGNDGNAAALAEHWQGK LAGTINSAMIVLGTGVGAALFLNGTLYTGSHDVSGEPSFMITNGLNPITRAQTAAGLSAV KTVNAMAAAQHIRGHNLGPRVFKALKPDTPAAAILATFTQGVAAMIYNIQTVLDLEKIVI GGGISVQSRVIDEIRARVATYLQVTPLAARTIKLPEIVAAKYRNDANLVGAVVPLVER >gi|225002557|gb|ACIZ01000022.1| GENE 57 60508 - 60774 347 88 aa, chain - ## HITS:1 COG:no KEGG:LC705_02739 NR:ns ## KEGG: LC705_02739 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 88 1 88 88 171 100.0 6e-42 MQPVTITNLDRLLTALIQAKQRGDLEQTVIDCLPVEPGDAHIFGVRADNGEIKPLIRFRF DQPLPADYAAVLKRHGFQLTVEHFKQVP >gi|225002557|gb|ACIZ01000022.1| GENE 58 60824 - 65308 4133 1494 aa, chain - ## HITS:1 COG:SPy0416 KEGG:ns NR:ns ## COG: SPy0416 COG1404 # Protein_GI_number: 15674549 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Streptococcus pyogenes M1 GAS # 345 890 469 1028 1647 107 26.0 3e-22 MNKNATIEAKRHYKMYKAGSRWMTAAIITFGTSLVVLGGTATQSVSADTKTPTADKTTQP VNQAQTQTATSTASSQATTADAKDKTAETQPTTTTTTKQVTAQSQAAPSTATKAQSQAST TNQAQPAAATKVQTGTPSSGANTQPAANTATTKSATSTASSAATQSAAPASNAATTNAAK TQSTAATTTDPGPANQDTLTKGNVKGLWNEGYQGQGMVVAVIDSGVQAHDDLRLSDDSTA AITKEKAEAAISKLGYGSYVNSKIPFAYDYVNNDSVNTGTTVAGSTHGEHVAGIIAANGT TADGATGNEKATTYVKGVAPEAQILAMQVIDEFADENANDISRAIRDAVTLGANAIQMSL GIGVTEQDLTDEEQAAVQYATDHGVFVSISAGNNANAGSIIGSKTSNDISTAYSPKNDST IGDPGAAASAMTVAAEKSATGDKSEMDGFSSWGPMADYTLKPDISAPGDNVISTAIDPTT NTQTYATESGTSMAGPYNAGAALLVMQKIKATRPDLQGADLVKAVKLALMNAADPMKDIN YPDTYISPRRQGAGQIDVSKAGDLTVSAEGNKDAGSVSLGKIGQTTSFTVTLTNHGKTAQ NYVVDTNGGPLTQVQDTSNGNTVHDKTLIGATVNTDTANFTLAAGETKTVTFKLSLDNTV AANQLVEGFLTFKAGDTSQTISVPYLGYYGDLTTEQVVDASANSGESIFNGGYLVDGANT PLGVTDSASLSSLVNTDTTGKYTWTLVPTYVDNKKVSFSPNGDGASDTVYPYVFSKQNLK SVTIQILDAQGHVVRVLDKENNTTKSYLQNGNSYNSDLGLSTDMRLDPNAFTWDGKVYDQ ATGKYVTAPDGKYTYRLVTEQYNTGAQQNQDFDLPVTVDTVAPTLTGLSYQNGRVTVNYN DQGAGFTKFSDIALKIGGKAYGVSLNNNGQNNDGTLSFDLTAAQKAALESSDGSLTLTLT DVAGNKTSKTLQAVTGTHQATTPTATTANVAPQFSWKVGDGPYNHWRTDGFVQAVSDQTS FTAYAQVPAGVDWIVYATDAMTGKVFSGKVDTKTGNVTFNLTASAPYGDFVGTVLAPTAD FGTYEQAGRANGDEMVVFLDTDGTAGYGHFSQKDPHVAVPLQDNAKAAANVKTTSGAPVL GGRAFSQITTHAQPTEGLTFDKFNDNSFTLVGADKVADIYNAKTGQLTITGHVDQPAGKT LTVTSATEPAKTVTIGADGKFSFTVPFKAAEQQAIGYRLTSTATDGSKKTQTAYGELQIY LDTIFPTLNMPQADTLQVDDKGNYEITTTSDTFTVSGTVNDNINGYRLYTNGDNIVHQKN LAGFNNHLDPLSTTSNPYGAAAFTQTYQLADGDNYFTITAVDMVGNKVTKIFHVIKTKAT TPTTPETPKTPTPTPKPGTGDQTGTENPKGPTTTPKTDEQGKTNPTPKFVDLTNTTKGQD KTGTTAATGKNTKQTAAAKTMPQAGEAQSPLAVLGLAILSMLGLAGFVSRKKRV >gi|225002557|gb|ACIZ01000022.1| GENE 59 65406 - 65555 60 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551319|ref|ZP_04440044.1| ## NR: gi|229551319|ref|ZP_04440044.1| hypothetical protein HMPREF0539_0575 [Lactobacillus rhamnosus LMS2-1] # 9 49 1 41 41 67 100.0 2e-10 MVLIGSNEMQTRKRYFSRHYQEKFSLTEIFIWRLTQAAGGYKLAVIKKK >gi|225002557|gb|ACIZ01000022.1| GENE 60 66164 - 67234 985 356 aa, chain + ## HITS:1 COG:STM4382 KEGG:ns NR:ns ## COG: STM4382 COG2220 # Protein_GI_number: 16767628 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Salmonella typhimurium LT2 # 6 356 4 354 354 495 63.0 1e-140 MADKTINNVTREDWILNTFPEWGTWLNEEIADKQVKPGTFSMWWLGCTGIWLKTAEATNI LVDMWCGTGKRSHGSGMMRKGHQMMRMSGVQQMQPNLRNQPFVIDPFAIKNVDALFVSHI HSDHLDINTAAAVNANCPDAKFYGPEKVCEIWQGWGVPAEKTVVVKPGDVVTIGETKVKV LESFDRTALVTEDDPNVQLAGKLPQDMNKIAVNYLFETTGGNLYHAADSHYSNLFAKHGN ENKIDVALGAYGENPRGITDKVTSIDILRMAESLKTKVVIPVHYDIWTNFMADPKEIEAL WKMRKDRLQYKFKPFIWQVGGEFTFPDDKDRMEFMYDRGFHDTFSVPNDTPFPAFL >gi|225002557|gb|ACIZ01000022.1| GENE 61 67258 - 67716 535 152 aa, chain + ## HITS:1 COG:SPy1952_2 KEGG:ns NR:ns ## COG: SPy1952_2 COG1762 # Protein_GI_number: 15675752 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Streptococcus pyogenes M1 GAS # 15 148 7 142 154 81 35.0 4e-16 MLLKDFLGKDLVDIRPEPAKDWQDALQQAAGKLIEHQYILPGYVDEIIGNVEKNGPYIVI VPGVAMPHAMAESENVLGTAIGFAKFPAPVVFDPADPEKQAQLFFTLAAKDPEQHLQNIG DLSDLLMTEGLIDQLLAVNSVDDFKAIVDAGS >gi|225002557|gb|ACIZ01000022.1| GENE 62 67736 - 69256 1548 506 aa, chain + ## HITS:1 COG:SP2038 KEGG:ns NR:ns ## COG: SP2038 COG3037 # Protein_GI_number: 15901859 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 5 478 1 467 485 383 46.0 1e-106 MQQILDFLVSVWDYFAANILTQPAYMIGFIVLLGYILERKPLYESIAGFLKAVIGYMILM VGSGGLVNSFRPILTGLKDRFNLTATVIDPYFGQNAVTEGLDKTFGRTFGDVMLLLLFAF VFNILLVRFQKWTKLRAVFTTGNVQVQQAATAFWILLFCFPQMGRIEVLLVMGVVLGLYW AVGSNMTVRYTQDLTDGGGFAVAHQQMFGIAFVSWLADKFKAHEVKAKKKARRLEDIELP GFLKIFNENMVATGILMLFFFGIIMLILGRDYFIGVFTASKGASGLAPNGSFLFYIMTTS LGFAVNLTILQLGVRTFVGELTESFTGISDRLLPGSVPGIDVAATFAFGEPNAVTIGFLF GALGQFLAIGALLLFHSPTIIIAGFIPLFFDNAAFGVFANRRAGAKAAMILPFFSGLIQV FGAALIATWIGLSKFGGYLGMFDWDTVWPFFTVLMKILGIAGIVVVVFILVLIPQLEYRH DPKNYFLMVTDYEQYKENVAKKKEAQ >gi|225002557|gb|ACIZ01000022.1| GENE 63 69329 - 69622 442 97 aa, chain + ## HITS:1 COG:no KEGG:LC705_02734 NR:ns ## KEGG: LC705_02734 # Name: sgaB # Def: PTS system ascorbate-specific transporter subunit IIB # Organism: L.rhamnosus_Lc705 # Pathway: Ascorbate and aldarate metabolism [PATH:lrl00053]; Phosphotransferase system (PTS) [PATH:lrl02060] # 1 97 1 97 97 166 100.0 3e-40 MKILVSCANGSGTSLMMMRSVQKAFKRLNLPITQIEHTNLAEGKSTAKQYDMVFTTTNFV DMFKDAKEKGVQVIGVKNVMRDKEVEQRVREDTDLVK >gi|225002557|gb|ACIZ01000022.1| GENE 64 69834 - 70475 692 213 aa, chain + ## HITS:1 COG:SPy0177 KEGG:ns NR:ns ## COG: SPy0177 COG0269 # Protein_GI_number: 15674382 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Streptococcus pyogenes M1 GAS # 4 212 5 220 220 280 67.0 2e-75 MAKPNLQVALDNNTLESALGDIRAVGNIVDIVEAGTILILQEGTIAVRALRALFPDKVLI ADTKCADAGSTVAKNMADAGADWMTCICSATIPTIQAAQKQVKEIQIELYGNWTKEDAQS WLDIGVTQAIYHQSRDALLSGGSWGEKDLAKVKMLVDMGFRVSVTGGLSVDTLKLFAGVD VYTFIAGRAITQAPDPAKAATDFQNEIIRIWGK >gi|225002557|gb|ACIZ01000022.1| GENE 65 70561 - 71322 536 253 aa, chain + ## HITS:1 COG:lin0370 KEGG:ns NR:ns ## COG: lin0370 COG1349 # Protein_GI_number: 16799447 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Listeria innocua # 7 248 6 250 254 106 30.0 5e-23 MVNVQARRGKILKAVDQGEPVVVEQLARQFDVSITTLRRDLKALAEMGQVHWHHGLVEKA NVATPANHASRSGIELLKDTIAAAVPSYIVKNSTLFVNSSSLCWRAINQLATMPLTIITN NIRATECVRHPETSIILTGGEIRYPKESLVGTVAVQILETMQSDFTLIGCDGISEKGGVT TQNIFEAQVNATMIRRTKQKVICVADYRKVGVTSNYHVADLAAVDVLITDNFANEKAVRD LRRQGIDVVQVAN >gi|225002557|gb|ACIZ01000022.1| GENE 66 71507 - 72394 670 295 aa, chain + ## HITS:1 COG:sgbU KEGG:ns NR:ns ## COG: sgbU COG3623 # Protein_GI_number: 16131453 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Escherichia coli K12 # 4 284 17 296 297 310 54.0 1e-84 MISLGIYEKALPRTESWVERLKMVRDLGFNFLELSVDESVERLARLDWTAAKRAKVRDAC WQTGVRIHTLMLSGHRRFPLGSADPAIREKSLTMLCKAIDLASDLGVRNVQLAGYDVYYE PKTLASREYFIENLKRGVAYAAAKEVMLAIETMDDPFLNSLSKIKTIKDEIPSPWLQAYP DLGNLSAWPENNVGRELELGIANIVSVHLKDTQAVTAKSKGQFRDVPFGAGVVDFAGCLR TLKRLDYSGAFTIEMWTEKAADPIQEVKQAKDFFDPLFVQAGFVQEPVAKTNVPS >gi|225002557|gb|ACIZ01000022.1| GENE 67 72461 - 73282 679 273 aa, chain - ## HITS:1 COG:L22687 KEGG:ns NR:ns ## COG: L22687 COG0561 # Protein_GI_number: 15672793 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Lactococcus lactis # 2 263 5 267 269 152 35.0 5e-37 MLKAIALDMDNTLLNSNKEISVTNRDVLRYLNRKGIRVILCSGRPFATLKPFLDELHVTK NDDVCVCFNGGLVRLVRDHTVIKANTLSKEQIKPVYDLVKENGFKLDIVAEDEVYSLTEF GKSSYQTMIPKQMPFIDTTFSKVPAKLPIFKVVVAGEPAMIDAASDAAQSLKQLTVTRSR RTLLEILPPNVNKMNGLKAALNFYRIPREQLAAFGDEENDKDMLEYAGIGVAMGNAIPEI KQIADITVGSNDDDGVANYLIDYFQISPTAIRL >gi|225002557|gb|ACIZ01000022.1| GENE 68 73479 - 74207 729 242 aa, chain + ## HITS:1 COG:CAC1341 KEGG:ns NR:ns ## COG: CAC1341 COG0235 # Protein_GI_number: 15894620 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Clostridium acetobutylicum # 1 230 1 230 233 289 61.0 4e-78 MLEKLKQEVYAANMQLPKLDLVTFTWGNVSGIDREQGLFVIKPSGVDYEDLTPDDMVVVN LQGEVVEGQLNPSSDTPTHTVLYNAFPDIGGIVHTHSPWAVAFASAHMDIPNLNTTAADT FYGDVPISEALTQQEIEEAYEENTGKVIVKTFKDRGIDHNAVPAVLVSQHGPFSWGATPA KAVYNAKVLEVIAEMDYHALTLTHQDVHLPQYLLDKHYYRKHGANAYYGQDGAKSMSHAT KA >gi|225002557|gb|ACIZ01000022.1| GENE 69 74418 - 74678 187 86 aa, chain - ## HITS:1 COG:SP1740 KEGG:ns NR:ns ## COG: SP1740 COG4115 # Protein_GI_number: 15901572 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 85 1 84 84 97 55.0 5e-21 MIKTWTDDAWADYMYWHDQNDKRTIKRINQLIQAIDRDPYKGIGKPEPLRYALTGKWSRR IDQENRIIYSIEKNHINIFACRTHYS >gi|225002557|gb|ACIZ01000022.1| GENE 70 74671 - 74940 321 89 aa, chain - ## HITS:1 COG:SP1741 KEGG:ns NR:ns ## COG: SP1741 COG2161 # Protein_GI_number: 15901573 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Antitoxin of toxin-antitoxin stability system # Organism: Streptococcus pneumoniae TIGR4 # 1 80 1 80 84 70 47.0 5e-13 MEATNYSDFRRNLKHYMSQVNEDAEPLLVTAKDDDDNVVVMSKHDFDAIEETLYLLSNPK LMAKIKRGDAQIAAGKAKQHELLTDFDHD >gi|225002557|gb|ACIZ01000022.1| GENE 71 75566 - 76366 221 266 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 10 263 4 240 242 89 28 7e-17 MSDWLGLDGKTIVVTGGSSGIGAAIVKELIHNGANVVNGDLKEGDLKDPKLTYVHTDVTD PEAVENLAVTAEKINGEIWGVVNNAGINKPRILVDPKDPHGKYELNVPTFEQIFSVNVKS VFLVSQAVVRRMVKQGHGVVVNMSSEAGLEGSVGQSVYSASKGAINGFTRSWAKELGKYN IRVVGVAPGIMEATGLRTPSYEEALAYTRDTTVEAIRAGYRSTSTTPLGRSGKLSEVADL VNYFLSNRASYITGVTTNVAGGKSRG >gi|225002557|gb|ACIZ01000022.1| GENE 72 76393 - 78261 1608 622 aa, chain + ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 7 455 11 478 499 64 21.0 7e-10 MNSLDYRLLRYLLANGTSSLDELAESENVSTRTMQKYIHELGESLGDAAEIRINKSGYFL HILNYRKFSLIQSGVFKQNIDNNDKQKRQAEILFRLIKERKFVPMDEIADQLTVSRGTLL KDLDACRHWLKNYDLGIESATSRGIKLQVGSTVDLTMLIYNHLFDYVQARLFDDKTLVAA VISRLNAAKIKTSTTQIFQKVMQIVVFLKRHHYELNGISKYYTNLMEDSPLFINIIADIE DRCRVKFSQEEYNFLAFPFNLYANKLLSAEKLARKVQANKVIFDRIAADIRTLVDAKIDY DQFYQTTKYHLIFLINRGIFHISPSDYLTDKMLQRFQLAADMAMVMIDKLEEILGIHIAD VEINYLTVYFEMALQHADRAPLDQPQVGFFSSMGQSVLQYLQSQLNTMFESQVSIRTFQD ETDILAHQDQLIMVFTDRPLAFRLKVPVVMIGDIFRDRVLETKVRASAVQHEIDAGRIIW RAQIYDNQPGQSYEAVLRATLQADCQAGLVDTGFIERLIQHEATTKFVLDNGAAIPHAIA DIDQNRLFLHLSVLTHAITIGGKSVSYIFVIGIPRTLGKKALEDLSMLYDLLFLLAVNET AMANLQKITDSRDPLTIVTEGL >gi|225002557|gb|ACIZ01000022.1| GENE 73 78262 - 78771 500 169 aa, chain + ## HITS:1 COG:PM1967 KEGG:ns NR:ns ## COG: PM1967 COG4578 # Protein_GI_number: 15603832 # Func_class: K Transcription # Function: Glucitol operon activator # Organism: Pasteurella multocida # 5 95 6 96 122 60 31.0 2e-09 MNILILGIFVAAAFLLQALMGYFQIRNFARNYHAVRQEGRVLIGKNPRRFRQGSLMLIGL DHNDRIQEIRVMKGLTVFSRFREVAQFDGELVAEVGADYTALQKLSRTERECFLNAYRNY VNYKTNNLSFEDFDTSRVSMFALPIFNEIGQRIKALPDALAHVFRKNTI >gi|225002557|gb|ACIZ01000022.1| GENE 74 78784 - 79353 642 189 aa, chain + ## HITS:1 COG:PM1971 KEGG:ns NR:ns ## COG: PM1971 COG3730 # Protein_GI_number: 15603836 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIC # Organism: Pasteurella multocida # 1 182 2 183 184 202 54.0 2e-52 MQYISDFAAGFMKLFQTGGKTFISWMTNIVPVVLLLLVLMNTIIAFIGEERIERFAQKAS RNVLMRYLVLPFLAAFMLGNPMCFTLARFLPEYYKPSYYAAQAQFCHTSNGVFPHINPGE LFVWLGIAQGVQKLGLNQMDLAIRYMLVGIVMNFIGGWITDFTTAYVSKQTGITLSKTVD LSARNGQEV >gi|225002557|gb|ACIZ01000022.1| GENE 75 79406 - 80521 1203 371 aa, chain + ## HITS:1 COG:PM1970 KEGG:ns NR:ns ## COG: PM1970 COG3732 # Protein_GI_number: 15603835 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIBC # Organism: Pasteurella multocida # 8 369 4 328 329 314 51.0 1e-85 MAEKKWHSIQVVKGSGGYGGPLTITPTEQKHKFIYVTGGNRPAIVDKIAELTGMEAVDGF KTSIPEDETALAIIDCGGTLRCGIYPKKNILTINVLPTGKSGPLAKYIVPKLYVSNVDVN QITALPDDAVPDQALNGVPFDQRGEAGKQHAALAEAGAAATTNTEAQTAATDEQAAEARE AKFDTNKTITAQMKKPNFIARIGIGAGKVIATFNQAAKDSVQTMLNTVIPFMAFVALLIG IIQGSGLGSWFAKLMTPLAGNVFGLIAIGFICSLPFLSPILGPGAVIAQVIGTLIGVEIG RGNIQPQYALPALFAINTQNAADFIPVGLGLEEADSKTVEVGVVSVLYSRFLNGVPRVVV AWLASFGLYAK >gi|225002557|gb|ACIZ01000022.1| GENE 76 80549 - 80932 412 127 aa, chain + ## HITS:1 COG:BH0773 KEGG:ns NR:ns ## COG: BH0773 COG3731 # Protein_GI_number: 15613336 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Bacillus halodurans # 7 125 6 124 125 84 38.0 4e-17 MSSVAATVKYETTILEVGSEARGFKDINMAILFGDEAPDALRSSCFIIKVNQILEPIKPG DVMMFGDQTYAITAVGNEVNTNLGNLGHTAIVFDGATTPELAGSLYLEQKPYPDLDVGTV IKVMKGE >gi|225002557|gb|ACIZ01000022.1| GENE 77 80936 - 81607 600 223 aa, chain + ## HITS:1 COG:lin0646 KEGG:ns NR:ns ## COG: lin0646 COG0176 # Protein_GI_number: 16799721 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Listeria innocua # 1 219 1 216 216 167 42.0 1e-41 MFIDTANLSQIKEMLQFNQFEGVTTNPKLLLKEGQPRFEQLTKIRALKPGVLFVQLVGDT KDELLADYHELRRRFPDTDDTRMAFKVPLFEPGYQAISAIRDEKPDECLLGTAVYSTRQG FMACVVDCDYIAPYVNRMEQLDIDPYKMIAETHSFYQSTDTHIKIMGASFKNASQVMAAI KAGAANVTISYDIFKQLMTNAAANDAIRVFNEEGRQLDKTAGV >gi|225002557|gb|ACIZ01000022.1| GENE 78 82200 - 84071 1354 623 aa, chain + ## HITS:1 COG:BH3853 KEGG:ns NR:ns ## COG: BH3853 COG3711 # Protein_GI_number: 15616415 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus halodurans # 1 497 1 502 700 117 25.0 8e-26 MQLSTRQRQIVLQLLNAEGVVTSKQLAEAVAVSIRTVKYDLADIREWLALHHSKLESAPR KGVWIEASVEDRMALREKIDEQLADNYLAPNERIIRMILILAQTGDYTTQQQLQARVNVS QTTVNNDLKKLAAFLHQVNVKLTSKNYYGYKLTGTELDIRRLLERIIAQQLNRKTLMAEL VDCLNALVEPKRALVLTSEPTFDHAFNTILKAAIQLGKQDQKMPDPSALITTMIRLAIGI VRQGINQPVNSYHRVVEQGDSTTFTGQLILKALAFYNLPVWADDFAYYLGADGQKLTVAQ NDNFVAMTHRIILAVGALVDHDFSHDSQLQENLYLHLSQSLGKENQLLQYSPFTQDIKHE YPQLFAAIEKTVHKELAAYRPILNDAFVAFIALHFMVSLNRDSQLKTVRVAYICATGIGI TNLIQQRVASTIPNIELVGFASIDDARALIAREHPELVISVFPLKHLDVQVIEVQPLPNA TDIAAIRRAVAKRLQVPLEQLKAEPPVVPIKPKPDLEKQTQQTILTMFSLYSELKRQLPT KIDPYYADAFMMHVFLAAQRIMFGKQYQGKPNHDDAKLAGTVERIFTDHGLAINRAEVHA ILEYLNLGHAVSQKGDVTTGSRN >gi|225002557|gb|ACIZ01000022.1| GENE 79 84025 - 84402 364 125 aa, chain + ## HITS:1 COG:no KEGG:LC705_02717 NR:ns ## KEGG: LC705_02717 # Name: not_defined # Def: transcriptional regulator antiterminator BglG/PRD-domain-containing protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 8 125 1 118 118 187 100.0 7e-47 MLCLRRGMSPLEAEIKLPVEVQKMIAQSQDPQAVQVIVSDVIQLAEQAEIHFTAVQLQVL TNHLIEMINRSKSGEKLPAVDPQMFAEVSKKSLDLADQVVRHIGHLADAEKYVLSIHFEA AQNKI >gi|225002557|gb|ACIZ01000022.1| GENE 80 84489 - 84848 533 119 aa, chain + ## HITS:1 COG:no KEGG:LGG_02713 NR:ns ## KEGG: LGG_02713 # Name: not_defined # Def: transcriptional regulator # Organism: L.rhamnosus # Pathway: not_defined # 1 119 1 119 119 199 100.0 2e-50 MVKVVIADRMGKGQNVAKGVEAAGGTAVVVPGMGADMRLGQVMDKEKADMGISFCGSGGA GAITAHTQYGWPERHGMRSIQEGVTAIEEGTKVLGFGFMDQEALGKALVEAWNKKYPEA >gi|225002557|gb|ACIZ01000022.1| GENE 81 84864 - 85232 361 122 aa, chain + ## HITS:1 COG:no KEGG:LC705_02715 NR:ns ## KEGG: LC705_02715 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 122 1 122 122 203 100.0 2e-51 MTVVNETKHQVVTVSGKGETKQQAFAAAFSNIQKKLIGDTETAILRIVPEKVEPLKLVKS SYTEKFLFFFFKRTRTTYAVTLAVTVAVTAIDLDALVFEDVAAPSPDAMSLPNLKNILKG VK >gi|225002557|gb|ACIZ01000022.1| GENE 82 85234 - 86013 778 259 aa, chain + ## HITS:1 COG:no KEGG:LGG_02711 NR:ns ## KEGG: LGG_02711 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus # Pathway: not_defined # 1 259 1 259 259 456 100.0 1e-127 MPILTILFQSIIIGGLVGFAAGVGAARMFTAPKTQALGAFRTLGEMNAAEGDPASHFSFG LGFFFNAWASTVGAGAFTQDITHRVIPNWAAAGLLVKNRNVEQTMHNPKKMGIAGAIAGI VVVAFLNVTSSSIPESLQVTAVKVLVPAANQLINLVMPILFWLAAIDAGRRSGLFGTVFG GLSAMIMGNAVPGVVLGILVGKGVDELGWTRITKSILVAAILLFVLSGFFRGFDLNLLKS FNLNAPDWLSNIHNTLSGK >gi|225002557|gb|ACIZ01000022.1| GENE 83 86028 - 86723 719 231 aa, chain + ## HITS:1 COG:no KEGG:LC705_02713 NR:ns ## KEGG: LC705_02713 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 231 1 231 231 324 100.0 1e-87 MADKQATANQAPIEEELREAADRDFWHADWGFVAIVAMMSAGVFAGTSMYFNYGVGAFNE VAIVAMLKAGMTGGSYGAAAAFGASFLFARILEGSLVGILDLGGSILTGVGIGIPAILLS VGAKSLVSNFALALLTGAILGLIIGMIIFLVRKFTINQSNATFGADVMMGAGNQTGRFLG PLIILSAVTASIPIGIGSTVGAALFYAWKKPIPGGAIIGAMIMGFFFPVKL >gi|225002557|gb|ACIZ01000022.1| GENE 84 87001 - 88122 1066 373 aa, chain + ## HITS:1 COG:STM4445 KEGG:ns NR:ns ## COG: STM4445 COG3964 # Protein_GI_number: 16767691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 1 373 1 371 377 325 44.0 1e-88 MFDVLIKNGKTEREQPIEVGINGGRIAAVAPKLEGAGGHQEIDLHQQSYVTAGWIDDHVH CYEKLSLYYDDPDEDGYKAGVTTVIDAGSTGADNIRSFYDITRAKKTNVYALINIGRTGI LAQDELGDLDKVNKQALFDAVADLPDFIVGIKARESHSVVIDNGIKPLLAARSYAALLGH LPIMVHVGANPPELKDILQAMGAGDVLTHAYNGKPNGMIDENGEIKEFVYDAYDRGVVFD VGHGTDSFNFKTMQIARDHGLDPKSLSTDIYHRNRENGPVYDMATTMEKMLLLGYTLPEV IRMVTFAPADTFHLLNKGRLRPGKDADVTIFNLTKGDKVLTDSNGNTKTGQQLIAPIYTV VGGAVYDLEEQHA >gi|225002557|gb|ACIZ01000022.1| GENE 85 88119 - 89219 952 366 aa, chain + ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 1 365 1 366 372 333 48.0 3e-91 MTDYYSTYDLKHVINASGKMTILGVSKVPEAAIEAQQFGDTHFFEMKDLVDKTGAYIAKK LGTEGAVVVNSASAGIAEAVAGIIGEGSKYHVYHPFSSRYTKREIILPKGQNVDYGTPEE VMIELGGGQVVEAGYANMCTPEHVEMMITANTAAIFYVKSHHAVQKSMLTIQEALEVAHR HELPLILDAAAEEDLHKYVEMGVDVVLFSGAKAIEGPASGLIFGKEPYIGWTKLQGLGIG RAMKIGKENLLGFTTALSQYLDQGPESGDAMKKRLHPFVAALNEVPHLNVKEVQDGAGRP IFRAAVTVEASSPKNAKQVTAELKAGDPAIYTREYRANEGIIEFDIRAVDQAEMDLIVNR LKEILA >gi|225002557|gb|ACIZ01000022.1| GENE 86 89234 - 89998 775 254 aa, chain + ## HITS:1 COG:no KEGG:LC705_02710 NR:ns ## KEGG: LC705_02710 # Name: not_defined # Def: 4-hydroxy-2-oxoglutarate aldolase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 254 1 254 254 478 100.0 1e-133 MNLTPNYYKNRVALNVLAGSVDNAKDIYEAAEGHVVVGVLTKNYATDEAAIEDMKKYQAV TANGLSVGLGAGDPNQSAMVSRVSQVLQPQHVNQVFTGVGTSRALLGQNETVINGLVSPT GKVGIVNLATGPKSSQKPAAEVPVETAIALLQDMGGTSFKFFPMGGLKHEAEFRAVAKAC AAEGFNLEPTGGIDLDNYEAILQIALDAGVKQVIPHIYSSIIDKATGLTRPEDVTKLWEM TKRLVDASELVAAD >gi|225002557|gb|ACIZ01000022.1| GENE 87 90274 - 90468 145 64 aa, chain - ## HITS:1 COG:no KEGG:LGG_02706 NR:ns ## KEGG: LGG_02706 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 14 64 1 51 51 95 98.0 4e-19 MAPCYNKTRKGASVAADTPLTRPFKTVGIKLTNQKTVIFSKRLATVFLIVLYYQHNGDDQ RNQR >gi|225002557|gb|ACIZ01000022.1| GENE 88 90842 - 90949 78 35 aa, chain + ## HITS:1 COG:no KEGG:LGG_02705 NR:ns ## KEGG: LGG_02705 # Name: pts # Def: PTS system maltose-specific transporter subunit IIA # Organism: L.rhamnosus # Pathway: Glycolysis / Gluconeogenesis [PATH:lrh00010]; Starch and sucrose metabolism [PATH:lrh00500]; Amino sugar and nucleotide sugar metabolism [PATH:lrh00520]; Phosphotransferase system (PTS) [PATH:lrh02060] # 1 35 1 35 161 68 91.0 9e-11 MFGLFKKEKRDVFTAPVTGELMPLEALKDGVFRKR >gi|225002557|gb|ACIZ01000022.1| GENE 89 90949 - 91326 354 125 aa, chain + ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 1 113 29 141 151 107 51.0 4e-24 MGDGYAVAPEEGLVYAPISGVISSVFPTKHAIGITSAAGLEVLVHMGLDTVEMDGEPFET KIAAEDEVQAGDVLSQVDIAAIKASNRDPAVVVVFTNMEKVKAFDAIKAGPVAHGDQVTI LTYAD >gi|225002557|gb|ACIZ01000022.1| GENE 90 91395 - 92138 638 247 aa, chain + ## HITS:1 COG:YPO1253 KEGG:ns NR:ns ## COG: YPO1253 COG1737 # Protein_GI_number: 16121540 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Yersinia pestis # 11 207 9 202 246 74 28.0 1e-13 MKLEKLVAGKSLTETEFTVLQYLVANIDRVLDLGVRGVAKANYTSAATVMRLAHKMGYRG FVEMQYKLMTMLRHGEAGSQSVEAADDPLQSAVLDQNDVTTIRAVAQQIAAIENQYLYLY AAGFSGVIGQYMFKKFQILGKRCFFSTPGDSAALLENYLEDLGLFIVVSKSGETQSVIDK AALVSSLPVPVVAFTGNADSTLAKMADWTLKVADDFPLDEVNQRASLFYPQMLALFELVI GEVEKLN >gi|225002557|gb|ACIZ01000022.1| GENE 91 92204 - 93070 572 288 aa, chain - ## HITS:1 COG:SP1115 KEGG:ns NR:ns ## COG: SP1115 COG1396 # Protein_GI_number: 15900982 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 265 1 266 287 112 27.0 1e-24 MKNFGATFRYLREARGISLSSLADDVVSKGMISKFENGTSDLSTTRFFHLLDAIYVTPYE FMIVMNHFKPLHTNRFLKKVTACALAQNVPGLKRLANEQYERWQQSQSLFDQLNWIMAAC ILAETAKQPLSAKVDLHVLTDYLFKCEDWGNFELILYGNTMTQLPIDAIVIFSQTLLEKC SLYTGLITVYETCINVLLNTIAVLIRHNRIQTALKTVALLEQKDLPESFLLERILLKYYK GILLEKTGESKKGHALIHAALSALDAGDCDTFISSLREALADLGVYHI >gi|225002557|gb|ACIZ01000022.1| GENE 92 93202 - 94794 861 530 aa, chain + ## HITS:1 COG:SP0137 KEGG:ns NR:ns ## COG: SP0137 COG1132 # Protein_GI_number: 15900076 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 17 530 17 535 538 221 28.0 2e-57 MKNFLMQQRGRTCLNIVWIIVNVLLYTGTSVLLTFTTDAVFSKNLLALVEWSVVNLLVWM TFLVSNYFQTVFQEKLTQRILVAVRSTISRKIAGKSYEQYHRQTTGEYLSEYVNDAGNIE VNAIKKFFALISSAATVLFATLALAAYHLLFLPVIFVLVILMLKGPSYLEKSMTTATKQL SDGNAAFSNQLTNVLNGFDVFSNANQLRQLCRLVKNAAQKYGHTKVAYTQTNTRVSNLIA ALSIFCQVMVDVVTSVLAILGAIPLGAISSTGNIAASVFNSMSSLSNDAVQIKSTRPLFD KIAARAVNNEAASESISVPTFQRALKIVNLSYAIDGKKIFDHLNLIFNRGGKYAIVGRSG VGKSTLLKILNGQITDYHGHVYLDHHDIRTLTRAQLTGIGQYIDQNVYLFNDSVENNTAL WRKKKHADNWLQKALKKAQVDFVKSPHQLIKENGENLSGGQKQRLALARFFYAPKPIALL DEGTSALDPETAQAVTKAFLDDPDTTLIEVSHHLDAKLRAEYDGVIELGK >gi|225002557|gb|ACIZ01000022.1| GENE 93 95033 - 96637 1229 534 aa, chain + ## HITS:1 COG:CAC3425_1 KEGG:ns NR:ns ## COG: CAC3425_1 COG1263 # Protein_GI_number: 15896666 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Clostridium acetobutylicum # 1 425 1 420 440 317 41.0 5e-86 MKQKVMDGLQRFSKAMFVPVLILPIAGILIAIGNIFTNQKLLEVVPFMNNPVTKGFGLIL SGSLVSILTNLGVIFCVGLAVGLAKKKKAEAGFTALLTFLVFINAMNKFMELRGILSKAE NLQGTGQAAVLGVQILDMGVFLGIILGITVGYIHNKFVDTEFHSAFQIYGGSRFVFIVLI PVTVLLAVALTYVWPFIQMGISGLGHVINQTGNFGLFLYGSLERLLIPTGLHHLIYTPFL YTSLGGVEEIGGHIFEGARNIYYAEMADPGIHLLSRSVIWDARGISKMFGLIGACLAMYQ MAKPENKNKVKAILIPAVVTSFLAGVTEPIEFSFMFIAPLLFVVHAGLSGLSMVVLNLLN VRAIGPNGFLDFLLYNLPLGIGKTHWPMYILVGIAFFFIYYFTFRFLIGRFNLKTIGREQ DTEETKLYSKADYQAKKQTPPVQVPKGAQDVPVATIIEALGGADNFESVTNCYTRLRTVL KDPDLVDEATLRNVTGASGVIKKGNNVHVVYGLAVTKVRTAVDAALGFDTAEVE >gi|225002557|gb|ACIZ01000022.1| GENE 94 96649 - 98034 1239 461 aa, chain + ## HITS:1 COG:ECs4622 KEGG:ns NR:ns ## COG: ECs4622 COG1486 # Protein_GI_number: 15833876 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli O157:H7 # 6 444 3 440 440 617 65.0 1e-176 MTQTKKFSIVIAGGGSTYTAGIVMMLLENADRFPLRALKLYDIDEARQAIIAKAIAIELK EKAPNIEFTWTTDPQTAFTDVDFCFAHIRSGGYKMREQDEKIPLKHHVVGQETCGPGGIA YGMRSIGDIIELIDFMERYSPDCWMLNYSNPASIVAEACRRLRPDAKILNICDMPVGTQR RMSQIVGLQPEDLEVRYFGMNHFGWWTSVKDKVGHEYLPQIRDYVAHHGYLTQVEVDTQH MDASWQATHKKAQDLLAVDPNYLPNTYLKYYLYPDYVVAHSDPEYTRANEVEDGREKRVF TAAQKIIDAGTSEVGAFPIDSHASFIVDLACAIAFNTHERMLLIVENNGAIANIDDDIMV EVPCIVGKDGAEPLTQGKIPLFQRGMILNQAMVEKLVVDGWIHHDYQELWQALTLSKTLP SAQVAKEVLDDLIVANREYWPELRHADHEVHLMSESPVSES >gi|225002557|gb|ACIZ01000022.1| GENE 95 98399 - 99475 422 358 aa, chain - ## HITS:1 COG:BS_araR KEGG:ns NR:ns ## COG: BS_araR COG1609 # Protein_GI_number: 16080450 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 6 349 29 378 384 178 29.0 1e-44 MNNSKRIADDLRALISEGGLVDDQLPTENSLMAKYRASRYAVRKATEELQKQGIIYKVQG GGTFVNKAYKKKTLSHAVGLVTAGDLTENGLLNTISTAFFKKGYTLFTVETHNSPQSEYE SLRSFYDLNADAVLIEPSQSAVNTQSLKLLGEMQVNKIFTFFLFSSYPSVSAPLFSLTDA DSEAAVTSEVIQMGHKRLLGIFQVDDMRSVLRMNGFIRAYQQHPEVALNSYMETYQSSES LRAVIERVRMHFIDVDKELRPTAIVVHDDRMALQVMSMLQRAGIRVPEDVSIVGFGDSIQ SSTVTPTLATVSFDKPAFVSHLVQQTLLAISGEKPVSKQFPAYLIKRKSLSRYPYRVD >gi|225002557|gb|ACIZ01000022.1| GENE 96 99432 - 99698 62 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551358|ref|ZP_04440083.1| ## NR: gi|229551358|ref|ZP_04440083.1| hypothetical protein HMPREF0539_0614 [Lactobacillus rhamnosus LMS2-1] # 1 88 1 88 88 164 100.0 1e-39 MSARKSSAIRFELFIIYSLISIEREILTLRLTEKKDLVNVGEGAEKPTPRFVHNYSNKFH KFIDKGLIEDYYESEFKNKGGLLWSQLF >gi|225002557|gb|ACIZ01000022.1| GENE 97 99680 - 100087 278 135 aa, chain + ## HITS:1 COG:no KEGG:LC705_02701 NR:ns ## KEGG: LC705_02701 # Name: not_defined # Def: PTS system fructose-specific transporter subunit IIA # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 135 1 135 135 255 100.0 4e-67 MVTIILTSHGSYAQGIYDTLACFSKDLNNVHTLCLGDDSIYDFNAKAESLIASVTGDVLV MADMFQGTPFKTFYTLLRDRKNAKIVVNISFVDALTALLNHQNELSFVVQQVLDNPGVQE VSTGALIQDTRPDDE >gi|225002557|gb|ACIZ01000022.1| GENE 98 100102 - 100908 471 268 aa, chain + ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 268 1 259 267 165 37.0 7e-41 MHVTIIQSILVIIFGFFMNYERWVSAIGLWQALLCGVITGLLCGDVTTGLYVGGTLQLMT LGVSSFGGASVPDYPAAAIVGTYLAIATGIGGKVGVTIGIPVAIVMVQLDVLLKMVNVYF QHQAEKAVGNRNYKMIGIWQWIAIILTMCETGIPILLTVIFGRGLVVTAFQYVPQWLLSG LQVAGGLLPAVGLGILLRTMPVKKQWPALLIGFLLVAYIKVSVLGVGLFGVAAAFVYYKS KHRVTTHNTKAPTASIKGGNGEEISGDE >gi|225002557|gb|ACIZ01000022.1| GENE 99 100901 - 101740 556 279 aa, chain + ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 41 273 37 268 275 192 46.0 5e-49 MSDQKQNLTNAEMRQVEKLPSNIKRRVLTRFVFGGATGSLNYEKMMALAYCYSVLPAMKF LYRQNPDGLQKALQTQLAFFNTNGIMAPFVIGADLAIEESQGVNSLPTVTGIKTSLMGPL AGIGDTLLLSTPGAIFGGIAASMAVKGNPVGVILWLVVMVAIKCLVIPLYKMGYNSGAKL VTTLRDELTSITDAISVVGLMVVGALIPTVINATVKAKYVAGKLVVNGQHVLDSILPGMI PVLLVLLVYWLLGKKRMTPVRIILVVLVLSIALSAIGFL >gi|225002557|gb|ACIZ01000022.1| GENE 100 101772 - 102263 319 163 aa, chain + ## HITS:1 COG:lin0021 KEGG:ns NR:ns ## COG: lin0021 COG3444 # Protein_GI_number: 16799100 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 2 149 4 151 162 119 40.0 2e-27 MNDVVDIRVDDRLIHGQVAGLWTNRLAATRIMVIDDEVANDNAQKELLRMVAPASVNTSI ITEEKAFNNLSANRYAGQRVFVLVKSPLVLKRLFDRGLKIHTINLGNVSKRDDRRTILPG IALNDREREALYSLINQGVTVTAIKTPTDPRLIVTEKMLRGNE >gi|225002557|gb|ACIZ01000022.1| GENE 101 102260 - 104380 617 706 aa, chain + ## HITS:1 COG:YPO1581 KEGG:ns NR:ns ## COG: YPO1581 COG3345 # Protein_GI_number: 16121851 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Yersinia pestis # 269 519 253 509 708 99 25.0 2e-20 MTNFKTLKQYTFGDTILHYLINDAQVVEWMVYPKDMANQVVLRQNQNSGFSLIQAKLVQD PYDKNFSNGLTMFNSATSRSIRFVKQEEHFSKDEEKITTICRDSHGNTYRHDVSWVPGSK RLKVRVSFTNTSGHDQQLSWLPSIVLSNISPFYEQVPTGVLDLIRIRSKWAMEGRLDQRP VESFELEESWKPSGLALVQIAQYGTMPVRQFFPYLGLKDNRFDVTWLIMLEGKASWQLNA ARLDNRLVLFGGLPDADNGHWYKDVAVGETYTTPFAYITVGHDELLKCSRRLQAPVQEDT LPIFYNEWGTTWGRPNAHLISESLPLLKQHSIDGYIIDAGWYKSKTSDWEQSHGDWQVDM MRFPGGFKPVVEEIHQQGMEAGLWFEMETVGRLSEKFQDTESLVQRNGHVVTTLKRRFLN MTNSNVQAYLNRHVLELLRQNAFDYLKIDYNDSMGVATDDAESGAEGLEKNISATLKFID KLHHEIPGLVIENCSSGGHRLTPAFIERTELSSFSDAHETHSIPIIAANEWLVIPASKNL IWCVLHADDTLEEMYFHLISTFLGRVCLSGDIRHLSTDQWHAVDQALTFYRANQRLIAHG QPFRFGSSILSYRNPQGYQVCGFTDKETLDESGRLLLIVFGFNLSNSEDVDLRLSSHEWQ VQDIVGAKKIGLQSDKTNWHGSIPANCYTAKAITFVRKREIEHFPA >gi|225002557|gb|ACIZ01000022.1| GENE 102 104660 - 107719 1808 1019 aa, chain + ## HITS:1 COG:no KEGG:LC705_02696 NR:ns ## KEGG: LC705_02696 # Name: xalA # Def: polysaccharide lyase family 8 # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 1019 1 1019 1019 1917 100.0 0 MKRCLFGVGAFVLALGMAVGLKVQAEIDPDTRVPNTVQRGSVQRTLGQSDQNVDTGTNRT TADETQFSLMRSRWRNRLMARNPDLNNPNVNAYLIDLAGQSKTLWNTMDRRPDRKRLWAK KSSDTTSADYTTTFTNIKLLTLGYYNPKSEQYQDPAVYRAILDAIDFMINVKQYNGTFST GNWWDWQIGAAQQLDDTLILLYDDLQQQDPQRLRRFVQPLLGYAKDPNIQWPKYTATGAN LTDISISVLASGLLLEDDHRVALVQANLPKAMGLVTAKDGIYADGSFIQHTFFPYNGSYG NEMIKGIARISSTLVGTPWAISEVQFANVFNLIDKGFLQLMVNGRMPSMVSGRSISRAPG TNPETTELETGKETLANLTLIAEAAPAGLKQKIYQAVATWVAQVGDYYNFFNNPRDYAAL NGLKTALSQATAQENDQDSLNVYGSMDRVMQKTSKYAVGLAMYSNRIANFEYGNTENAHA WHTADGMLYLYNRDFNQFGEGYWTTVDPYRLPGTTVDTAPLADGAKSSSRSPQSWVGGAT DGIVASVGMVLDKTNEGQNLKAMKSWFLLNDQIVNLGAGISGTTKADIETILDQRQIDPL TTKITIDGHTYVNQETAKNWVNLNTNDPSNNVGYIIAKDNDQVDISRATRTGSYKDINGY FPSDTVYRHHYVTLAAKHGSAVKDGKYEYVTVPGASDSTIAALAKKPKYQVLANTNEVQA IKTQDQIMANIWNKASLLGGLLEIDQPVSLIIKDLGENTYQLTATDPRQSDDPINFNFKY PVHIRKKQADGFSVNQDLLTLKTKGLAGASRSVVVTVDVPTDKAALEGLISHAENVRAID YTPSSYKKLITVLASAKAVYANAAAKQVVVDQAKAALEDALKKLVKVADTSALKTVLAII NKLKGEVYTSESWQKLQDALIFGKVTLKNVESTQETVDYATKLLVEAQRALIKKDVNEAS KHGQTTRLGKNSEDSRHDPEKMPNTGEKGNFIFIIIGFTIIVLTGIVMFVCEKRENQTN >gi|225002557|gb|ACIZ01000022.1| GENE 103 107561 - 107869 73 102 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAICEENNKLKFSIFPINLLISERKQTLLRVYKRMLCNSFILTTYIYPLHLVRLVLPFLA YKHYDTSQHDNGKADYDENEVAFLTGVWHFFRIVTAIFTILA >gi|225002557|gb|ACIZ01000022.1| GENE 104 107925 - 108614 785 229 aa, chain + ## HITS:1 COG:SPy0889 KEGG:ns NR:ns ## COG: SPy0889 COG0120 # Protein_GI_number: 15674914 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Streptococcus pyogenes M1 GAS # 6 226 4 223 227 220 52.0 1e-57 MDQNKLKQEAAQRAAEFVEDGMTIGLGTGSTVFYLVEAIAKRIKEEHLSLNGVATSIRTR KQAESLGIPMKELDGVDKIDLTIDGADEVDKHFQGIKGGGRSHLIEKIVAINSARNIWIV DETKLVDTLGKFPLPLEVIPFGSGKLLQRLADEGLKPAYRLNEDGSKALTDSKNYIIDLH LGRIEHPHLLAEWLNKQVGIVEHGLFLDLVKTVVVGTTHGPEILDAHRG >gi|225002557|gb|ACIZ01000022.1| GENE 105 108731 - 109750 491 339 aa, chain - ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 4 339 3 339 339 264 40.0 1e-70 MPTVLTFGETMLRLKPVDHQRIFQASNFEANYGGAEANAAVSLSLLGDQVQYLTKLPDNP LGSTARNTIRSFGVNTTKILWGGNRLGIYFFEKGTSVRNTNVVYDRAGSAFATVKASEFD WPSLLQDVDYFYFSGITPAIGSELQQAILDACRYCANHKITVVCDMNFRGKMWTAETAQT YFKTVMPYINVCIANDEDFEATLGIKAFDGNMATGIDQIDDFKRGMFEVINRWPNVHTVA SVVRNIYSVEKSQWTGLLVQNDAAYQGPIFNMHVFEGVASGDAFGAGLVHGFIEDFNPQK MIDYAISASVLKLTISGDLNLVTDKDINAIMNTSSGVNR >gi|225002557|gb|ACIZ01000022.1| GENE 106 109755 - 110408 357 217 aa, chain - ## HITS:1 COG:L0022 KEGG:ns NR:ns ## COG: L0022 COG0800 # Protein_GI_number: 15673608 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Lactococcus lactis # 1 205 1 204 213 202 52.0 4e-52 MQKYTFLSRLINTGCVAVIRGENLQAAIRTCDAVIAGGITGIEFTFTIPHADKALKELTE KYDSQKSIVIGAGTVLDAVTARLAILAGAKFIVSPSFNPDVAKICNLYAIPYTPGVFTPT EIQQALEAGVDLVKIFPGSVAGLPMIQALKGPFPTLAIMPTGGVSLDNMEAWFSAGATLV GAGSNLVEAAAHGNFDQVTATALKYRKKVDQIKQSRR >gi|225002557|gb|ACIZ01000022.1| GENE 107 110528 - 111352 219 274 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 31 269 4 238 242 89 27 1e-16 MSEIHQTEEEIRQHEEELDHFKMTQFNLNGKVAIITGGNTGLGQGYAVAMAEAGADIFIP TFGRAEWDNTRRLIEKRGQKVAFMEVNLTEPGSAEKVVKEALKQMGHIDILVNNAGMIRR NPLLESKDKDWDQVIAINLSAVYHLSLEVSKVFAQQKSGKIINIGSMLSFQGGKYIPSYT ASKHGVAGLTKAFASEMGPYNVQINAIAPGYIKTENTAPVRADKNRNDDILSRIPAGHWG EPYELMGIAVFLASDAANYINGAIIPVDGGFLVS >gi|225002557|gb|ACIZ01000022.1| GENE 108 111386 - 112219 545 277 aa, chain - ## HITS:1 COG:BH2166 KEGG:ns NR:ns ## COG: BH2166 COG3717 # Protein_GI_number: 15614729 # Func_class: G Carbohydrate transport and metabolism # Function: 5-keto 4-deoxyuronate isomerase # Organism: Bacillus halodurans # 1 277 1 276 276 311 52.0 1e-84 MVTRYAHSPEDIQHYDTSKLRHEFLMEKIFNPGDILLTYTYNDRMIFGGVMPTDEPLEIK LSTELGVDFFLQRRELGIINIGGAGAITIDGRKDAMSNQDGYYIGMGTQKVVFTSEDRDH PAKFYVVSTPAHKTYPNKKLPFATALAKPMGDQQHLNKRTIYKYIDASQMDTCQLQMGYT VLEPGSSWNTMPAHTHARRMETYMYFNFADPETRVFHFLGKPDETRHITLFNEQAVVNPS WSIHCGVGTTNYAFIWAMCGENQTYDDMDQVAMNELR >gi|225002557|gb|ACIZ01000022.1| GENE 109 112463 - 113230 358 255 aa, chain - ## HITS:1 COG:TM0065 KEGG:ns NR:ns ## COG: TM0065 COG1414 # Protein_GI_number: 15642840 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Thermotoga maritima # 15 251 4 240 246 129 34.0 4e-30 MNTGKEASKPYGTVLIKAKEILDFLLAANDPPTLSDISRGLHSPKPTTLKILSTLETLGF VWRDTDSKRYFLGTHFIPYAQKALATFNIVNVARPFLEDLRDKTEETINLGIERNNKIIL VEKLESPRSIKLQSTIGGSMNLYSSAMGKAILATFSSKSLDSYFKSTKMVPMTPHTITTP SKLQKDLNSIKELGVSVDNEENEEEVFCLGASIVRDGQLYGAFSISAPKYRMPQERRSAF VRMLLDTKHAIESAI >gi|225002557|gb|ACIZ01000022.1| GENE 110 113454 - 114284 339 276 aa, chain + ## HITS:1 COG:no KEGG:LC705_02689 NR:ns ## KEGG: LC705_02689 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 276 1 276 276 563 100.0 1e-159 MLISLISAKSRIDSDLRSDESDAELILDHLYVKGDYLEIAFEPQTLPCFRWIQVDAALSP SLVYFTQTPWRYHIPTNYLRVTEPAHESIFPEMAFAGREHVIRIWRPDVVDLKGERNLAL NCHDQAADMGAFPHASANIETRHDPTFAARNAIDGYRLNHHHGKFPYQSWGINQDPKASF EIDFGRNVNLDHAVITLRADFPHDSYWKQGTMTFSDGSQMVIHFSKTDNQQTFTINKSNI RSIRLSELVKAEDDSPFPALTELEVYGSETFEEMKH >gi|225002557|gb|ACIZ01000022.1| GENE 111 114344 - 115459 372 371 aa, chain + ## HITS:1 COG:no KEGG:LC705_02688 NR:ns ## KEGG: LC705_02688 # Name: ugl # Def: glucuronyl hydrolase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 371 22 392 392 756 100.0 0 MLTTALDNAIKHLDLNIKVMGENFPEPSTIHNRYAPMKNIEWTSGFWTGMLWLAYEYTGS NHYRELAEKNVTSFSNRINQKIAVDHHDLGFLYSPSVVSAYQLTGSSVAKRSGIKAADQL LTRFNEKGGFIQAWGKKGAKDENRLIIDALLNIPLLYWATRVTRDVKYQQIGDRHYQTAL KTVFRSDGSTFHTYFFDDDGNPLRGATRQGYSDDSDWARGQAWAIYGTALHYYDTHDKTT FDVFKAVTNFFLNRLPADHVPYWDLIFQEGSDQSRDSSSAAIAVCGMHEMLKYIPESDPD KNVYRMAMHAQLKSLIQNYAAPLDGQTGEPLLLHGVYSWHSGHGVDEGNLWGDYFYMEAL IRFYKDWQLYW >gi|225002557|gb|ACIZ01000022.1| GENE 112 115472 - 115972 321 166 aa, chain + ## HITS:1 COG:SPy0631 KEGG:ns NR:ns ## COG: SPy0631 COG3444 # Protein_GI_number: 15674704 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 1 163 1 162 162 167 52.0 1e-41 MTEPNIKAVRLDERLIHGQGRLWISNLGVNLVIVANDEVATSHIQQQLMSSLMPESVGIR FFSLEETANKIFKASPRQTIFIIVKTAQDVLTLAEKGVPITELNVGNIHMKEGKTRLTNF ISVDASDLEALKTLHIKYHVNLNTRTTPLGNDVGSDFDLNDYVTKH >gi|225002557|gb|ACIZ01000022.1| GENE 113 116001 - 116813 640 270 aa, chain + ## HITS:1 COG:SP0324 KEGG:ns NR:ns ## COG: SP0324 COG3715 # Protein_GI_number: 15900256 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 1 240 1 241 259 226 50.0 2e-59 MTYSILQALLVGLWAAFCFAGQQWGIYTNRALFISFGIGLILGDLQTAVVFGATAELAFM GFGVGPGGSTPPNPLGPGVVGTIMAISIQGLKPAAALSLSYPFAILIPFVITFIFSVNAN NLAWSRKAIEEGKYRKFHFLANTTLLGFILFAFCFGFAATLSTSALKVFVQAIPQWLISG LTVAGGLLPAVGFALIMSTMVKKEYIPALILGYVCVAYLKMPVIGLAFAGAVLAFNNYYN GHRANKNQDQGSNTNNDSNNSDDGGIEDGI >gi|225002557|gb|ACIZ01000022.1| GENE 114 116767 - 117618 607 283 aa, chain + ## HITS:1 COG:SP0325 KEGG:ns NR:ns ## COG: SP0325 COG3716 # Protein_GI_number: 15900257 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 13 282 1 271 272 226 45.0 4e-59 MTVTTVTMGVLKMASSRKPVLTKKDYLNSILRSYVLQNAQNYGTMQGTGMANSIMPQLRK IYKDDDAEFKRVTTSNLEFYNTNPQPYPFVTSIMLAMYDSGQDENDVRAIKFALMGPLAG IGDALSQFGLAPLFSSIFASLALQGMTWAPIPFILCLFGITFGVRMLMGYLGWKVGTSII DTLSDRMAAIADVASMLGLTVIAGLSVSFVKVNLAWQYTQVIKGKTQVVAVQTILDKIMP FMLPIALTYFVYWLITKKKWTIYKIVILLFVAGVLLSVLGILK >gi|225002557|gb|ACIZ01000022.1| GENE 115 117704 - 118171 388 155 aa, chain + ## HITS:1 COG:no KEGG:LC705_02684 NR:ns ## KEGG: LC705_02684 # Name: pts # Def: PTS system mannose-specific transporter subunit IIA # Organism: L.rhamnosus_Lc705 # Pathway: Galactose metabolism [PATH:lrl00052]; Phosphotransferase system (PTS) [PATH:lrl02060] # 1 155 1 155 155 306 100.0 1e-82 MNYAMAIVGHGRYPEGVLSALKLLIGTTEGMTAFNLDENTTHERFEQCLNDFLKENKHAI IFADMTGGAPHQIVSRLIIEKNQPHQYIISSAPLNLILDLYAKNMSGFEDNAIEETLRHT VELSKQLIEILPDRMKTNSTKVPIPNAAPDEGDGI >gi|225002557|gb|ACIZ01000022.1| GENE 116 118171 - 118518 284 115 aa, chain + ## HITS:1 COG:no KEGG:LC705_02683 NR:ns ## KEGG: LC705_02683 # Name: not_defined # Def: preprotein translocase YajC # Organism: L.rhamnosus_Lc705 # Pathway: Protein export [PATH:lrl03060]; Bacterial secretion system [PATH:lrl03070] # 1 115 1 115 115 170 100.0 1e-41 MTLWQIVLAILVVVVFLLYLVAIPLAKQRAMKKQAAIVDQMHANLKLGDQIVLIDGIVGT IRGLDQENVRVEIAVNTIINVKRMGIAGVTKEAKTDGENDLDHVHSTVASASTPH >gi|225002557|gb|ACIZ01000022.1| GENE 117 118457 - 120382 1024 641 aa, chain + ## HITS:1 COG:no KEGG:LC705_02682 NR:ns ## KEGG: LC705_02682 # Name: not_defined # Def: heparinase II/III-like # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 641 1 641 641 1273 100.0 0 MAKMTWTTYIQQLRQHQHLTDHAQKNADRLLKNVYLFDNPYAMEPTQISYTMDPIQWQKT PNGDPEWLYMLKRQEYLLDLLEAFYETGDMVYQKKMKALLFSWIEENLAFPDTWRTIDTG IRLLNWTPVIANLLESQLLTAKERVNVESAVNTQAAYLKQNYTEKFDISNWGILITTGIL TYAAQFPNVIESDILHWAQKRFEVELDLQVDAQGMQWEQSPLYLLEVWRSSLAVIAAQQR ADLSVSPIVLAKTKAMHNMMAQYIKPNLKLLQQGDTDAIRIDSLYQASVAILKLPSALSK QLDPVFDFGLLELAHEQWQLTTSEAVLPKQFDAPISGNYFWRSGWDKQADYWHLFNGNLG SGHGHAALGHLDLTIGGQDVLVDPGRYTYVDGTERRYLKGVTAHNTVMLDHKAFSLPKDS WKYQYVSNPIANQSVKFARGQVVKAVFLDQSQEDSAIITRFLIGLSEERLWLALDLISYP GQHSLQRFWQISPHLEVARNGDGYILGDSARFTTTESQIRQSKQLFSPRYNELQHLTRLE SETLFQDFTAQVAVFSAGDKVVKITPVSAKHSGEVEEEVPQKLALGFRLDLGENRDYLIT LQPENTILGRKLYWFDGTEAYGSLNIFSRQGHKVIEHFQLL >gi|225002557|gb|ACIZ01000022.1| GENE 118 120421 - 121440 458 339 aa, chain + ## HITS:1 COG:no KEGG:LC705_02681 NR:ns ## KEGG: LC705_02681 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 31 339 15 323 323 572 100.0 1e-162 MIITHSTEEESTTKKAVSLKLLALCLLMILIVGCQTQKVKAADLKVADTPVPTRIYQMFL QDEKATTVNRYIKQYHANYDKHFWKTKYNGKTPQQAAQNEALKKIKRFVIEDKALVKAGL IKRPFAEFERYQKENQAGANLSGIAAAQKQHQGLMLKLESQYVQSHRKSVTINQKKDFYA KYKAKYWSVPAIVHYEVLTFDRAKIKDINQFSEKVQQINGEHIDLKSIQNDFEEAGFKGQ YNQTDSLHDDNQYYGVYSRLASDHSNELDVIFPVWISEEKMGLLRIFSTEDGGFQPFSDV QDDVVTRLLNDKLRRKISKTVQQVKIHIDQAALSKQALG >gi|225002557|gb|ACIZ01000022.1| GENE 119 121455 - 123725 888 756 aa, chain + ## HITS:1 COG:no KEGG:LC705_02680 NR:ns ## KEGG: LC705_02680 # Name: not_defined # Def: subtilisin-like serine protease # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 756 1 756 756 1442 100.0 0 MKCWKGTKLFLLMIFVCGLAFILNDHPQQVVNATDIRTFYVSNTGDDHSDGLSANHPWRS LDKVESSTFQPGDRILFDANSVWNGQLILDGAKNGQGATGNPITIGSYNQGNTGKKAIIN GLGTTADKSSYHERKLSNLNLMTGTIELWNANNWTISNLEVTNSAGSGKRDAMRIGILVA SDISTAYPQGNDSQTIQKKLAIFKASHRTGITVDNNYVHDVEGAYQSDPVPDNTGKMVPA GKNSGGIIIVGNTDAVAKNNVVTDVSNEGLRNDANASVLPGGWDQYSFKASAKINFHNNY IRNSAGDGIVISSSENGTAEYNTVQAANSMPNSKNEAGVSKNFAGLWFMGGEYNFAQYNE VFDIPNHYLDGAAFDFDGFASKGVYQYNYSHDNSGGFTLFMGDHQTDNVFRYNLSVNDVK NVPSPALNHLIFVVSGKADGIDGFPLFANNTFIVGQDVKNLMISNNGQTGIRFVNNLVYA PSGNTPKFVVNQDGTKQPLFTEGRLDHNLFYPEALMDNSHTGEVDASNNIFSDPQLPNVG SMPSGVIQHGDGSFDFSKLAGFVPLAGSPAAGAGINVDALIPNDVKAKFPITHDFAGKPI NTNRPTIGAFEAASSVTNVDKGALERLIAQALDVKRTNRYLLAGTTKKHLFDQALNTAQQ VFNNPYVNQNQIDHSVAELQTTMKGLDGKDVTKHAPTEVVVKKQSVAGDKRIKKSDEEQR LPKTGEQTASFLPSVSILAVMGIVSGSLYSRFIKTK >gi|225002557|gb|ACIZ01000022.1| GENE 120 124487 - 126169 1097 560 aa, chain - ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 556 1 557 561 625 55.0 1e-179 MHKSWWQEAVVYQVYPRSFQDSNGDGIGDLQGIIQHLDYIKELGADVIWLNPIYKSPNAD NGYDIADYQQIMPEFGTMTDFQQLLKAAHARGLKMMMDLVVNHTSDEHPWFQAAMQSRTD PHHDWYIWRDPVDGHAPTNWRADFGGSAWTYVPEVGQYYLHLFAVKQPDLNWTNPAVRKA VFDMMTWWCDQGIDGFRMDVINLISKPEVFADDPHLLEQPNGNSLGLIANGPHVHEYLRA MNKAVLSKHDLMTVGEAPGVTPALALQYTGFDRHELEMVFQFKHVGLDNDPQFGKWSLKH PQLIDLKRVLSDWQTALHGKAWNSLYWDNHDQARAVSRFGDDRQAFRVRSAKMLAATLHF LEGTPYIYQGEELGMTNVAFPSIHDYRDLDTLNAWHELVEQQHALAPEDMLKRIHRRSRD NARTPMQWSTAPQAGFTAGTPWLAVNPNYPDINATAALADSDSVFFFYQKLIRLRKQYPD LIVYGAYTLLDSDDPDVYMYQRQAANQELLVISNFTDQTLTRNIAKKLSPSAKLLISNYD DDAENTLRPYETKAYLIIER >gi|225002557|gb|ACIZ01000022.1| GENE 121 126475 - 127194 425 239 aa, chain + ## HITS:1 COG:no KEGG:LC705_02678 NR:ns ## KEGG: LC705_02678 # Name: not_defined # Def: lipoprotein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 19 239 1 221 221 378 100.0 1e-103 MKQTSESRRRQRPPKRKWMAPLAVLILGLVIIGGYFYIAQQQTKRGLTESQQSAIKKVTS KQHASKSSAVKPSDMGESRGRSSQSTAGSQDYVVDVAKLLRERSGAVFTRQGVNAPTRIE LQADPQTANYRLTIQYQHADAVTMKATIRNVATKTIKVFSADAAGQTRTVKCNTEIKVGS FTDEGSHSQTAANMIGDKFYLFYNAHGTVSLVTPNYAGNVETKADAAIMNEYVQASAAE >gi|225002557|gb|ACIZ01000022.1| GENE 122 127525 - 127905 244 126 aa, chain + ## HITS:1 COG:no KEGG:LC705_02677 NR:ns ## KEGG: LC705_02677 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 126 1 126 126 248 100.0 6e-65 MRRLTIETEETLYKVGFVSALAVVIALTLWWTVYRDGGVAYYAKVHEPRSQFSVTVPVNL RQKCYVYRALAKDAAGRGKLLEFKTDEYDPGPFSDGQILRLTYNTRYGVTHYERVSINEV PLKARD >gi|225002557|gb|ACIZ01000022.1| GENE 123 128023 - 129144 960 373 aa, chain - ## HITS:1 COG:BH2011 KEGG:ns NR:ns ## COG: BH2011 COG1062 # Protein_GI_number: 15614574 # Func_class: C Energy production and conversion # Function: Zn-dependent alcohol dehydrogenases, class III # Organism: Bacillus halodurans # 1 363 1 360 366 316 47.0 5e-86 MKIKAAVVDEKGADFKIRDDVELAPMGPDDLQVHMVASGICHSDEALRIGDAVIGYPIVL GHEGSGIVEKVGPEVTQFKPGDHVVLSFYACGNCKNCLKGIPTQCLNYAHNNLSGTRPDG SAHFTENGKPVADMFDQSSFTTTTVVRERNAVKVDKDLDLRKLGPLGCGYVTGSGTVLNT LKPKPGDTIAVTGTGAVGLAAMMAGKISGCTKVIAIDIVDSRLELAKELGATDVVNSKTE DPVAAVKKLTGGLGVDWAVDTTGVKAVMEDTIQMLAQGGTTATIAVTPHHIDVDTWNDLC VNDKKIVGVNMGDSIPQIDVPRLIEFYKQGMFDFDKTEKFYQFDQINEANADSRSGKTIK PVLIIDKDYVPGK >gi|225002557|gb|ACIZ01000022.1| GENE 124 129337 - 130359 846 340 aa, chain - ## HITS:1 COG:lin2983 KEGG:ns NR:ns ## COG: lin2983 COG2207 # Protein_GI_number: 16802041 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 4 321 3 323 326 212 38.0 1e-54 MELAILKQLQSLTDVEKKQKEHHVFSDDIPPTAIDLRESKTANVPVLNDYFFRNHAIYVS KHNRYAPYPLHTHQFFEMNYMLQGHADETVNGQRVHLSQGDVLLLDIGSEHSIDALGDND LLINILFRDRNISIDFLNQIQSQQSVLYDFMINHLRKQKTKQRYVLFRNGFHDIQITLER IIEEYFRPRAFSDTIIQSELTVLIAELIRGHQPTIKDPSPSQKLAVKLLNDIHEHYRDLS LEDLANKYAYNKNYLGNLFSKEVGKTFSEALTQERLINARRLIQNTKKPISEICLEVGIS NKSFFYHKYHALFGNTPKDDRLHTTGYISPDHTNPPLTIL >gi|225002557|gb|ACIZ01000022.1| GENE 125 130482 - 131834 1248 450 aa, chain + ## HITS:1 COG:lin2982 KEGG:ns NR:ns ## COG: lin2982 COG0477 # Protein_GI_number: 16802040 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 419 1 419 422 539 69.0 1e-153 MASEKSSLKSTIRVSITNFLDSGSIVAGASGLTLWTQHFGLSSFQVGLLGALSANAFGAA LGALIGGPLSDKFGRKLIYTYDMLVYMVGTILVMFALNFPMLLAGFLVTGLAVGAGVPAS WTYISETSQDDNRAKNIGVSQFAWSLGPAVIFILGTVLAPLGLFGNRILFGLLTVIAFIA WLLQRGLGESKAWQDQKAFEKSSGEKSHPYRTLFSNKTSLKWLCFLVGVYMFWNLVAGAM GFFMPYVYETAGGLSNQEANLLQAVLWVLTALATYFGFAKYGDKANHRIFFFVGAAMAAA SWIVLTYAGMAQSWSLWAFVALWGISAGIGAQAWYALWATELFPTQFRAGSQGVMFFLVR ASAGVWSIIFPAILNSLGFTVAGTFMIGLLLVSLVIGTIWTPKTRGKSLEEITREQYGDK FLTDDEKSKADRDTAAKDTGSERVSPQSIN >gi|225002557|gb|ACIZ01000022.1| GENE 126 131868 - 133346 1374 492 aa, chain + ## HITS:1 COG:lin2981 KEGG:ns NR:ns ## COG: lin2981 COG1070 # Protein_GI_number: 16802039 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Listeria innocua # 1 462 1 462 483 587 62.0 1e-167 MKAYVAVDIGASSGRLMLGAIVDGQLKLTEVHRFKNGFKNEAGHDRWQIDHIIDEIFAGL EKVKKMGYTAVDLGIDTWAVDYVLVGNDGKKMHDPVSYRDARTNQAVRQLTSELPKSYIY EKTGIQFQDFNTLYQLYTEERDDLAKADKILMIPDYIGYVLTGNAVTEVTNASTTQMLNL RQGLFDKDLLKEVNVAQDQFPALVESGTPLGKISHKWHVKYDIPETDVITVATHDTASAV VGTPGFGNHWAFLSSGTWSLLGAELNTPENGQDAFKENYTNEWGAYGTYRFLKNIMGLWI VQCIKRELNDQYSFKELAEMADKVAPFRVFIDINDKRFENPANMIKELQDYVAETGQAKL ETPGELTRAVYENLALYYANEIHKLSTIIADPIDTLNIVGGGSNVTLMNQLTADLANVKV VAGPSEATAIGNLLVQMITTGAVKDVVAGRKLIKASFDLKTYEPDSSAYPDVFAKYKAFM KTVKVQTAKEAV >gi|225002557|gb|ACIZ01000022.1| GENE 127 133349 - 133663 327 104 aa, chain + ## HITS:1 COG:lin2978 KEGG:ns NR:ns ## COG: lin2978 COG3254 # Protein_GI_number: 16802036 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 103 1 103 104 127 62.0 6e-30 MKRIGQVMYVYPDKYEEYEKRHRELWPEMKAALKEYGATNYSIYLNKANGELFAYLEVPD VAKYNEIANTDICKKWWAYMEPLMKTNPDNSPVADDLHEVFHLD >gi|225002557|gb|ACIZ01000022.1| GENE 128 133727 - 135007 1260 426 aa, chain + ## HITS:1 COG:lin2980 KEGG:ns NR:ns ## COG: lin2980 COG4806 # Protein_GI_number: 16802038 # Func_class: G Carbohydrate transport and metabolism # Function: L-rhamnose isomerase # Organism: Listeria innocua # 1 420 1 420 420 546 61.0 1e-155 MVKPEEVDKAYEVAKQRYAEIGVDTDAAMKELEKVPLSVHCWQGDDIHGFLFPNQELTGG IGVSGNYPGIARTPDELAGDMHEALSLIPGKHRVQLHAIYAVTDKKRDLDTLEPEDFDYW IDWAKQEGVGLDFNGTFFSHPMVKDNMTVSSPDPKVRDFWIRHGKISREISNYIGEKLGS QVVNNFWFPDGFKDNPIDKKTPRLRLLKALDEIIKDPLPEKNTIESFEGKLFGTGIESYT TGSHEFYQNYAISRNKLWTIDAGHFHPTEDVSDKFSAFFPFGKGLFMHVSRPVRWDSDHV VIMDDALIRITRSLVRDGYLDRTHIGLDFFDATINRVAAWVVGARATQKSLLQAMLAPID QLKKDELNADFTTRLIETEELKSFPFGAVWDKFCQDHNTPVGFDWMNNIHQYEKDVQFKR DAKLVH >gi|225002557|gb|ACIZ01000022.1| GENE 129 135036 - 135926 788 296 aa, chain + ## HITS:1 COG:lin2979 KEGG:ns NR:ns ## COG: lin2979 COG0235 # Protein_GI_number: 16802037 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 13 284 2 272 273 333 52.0 2e-91 MDNKKQFLNPEYTQSFVESPYVAQMRKVTWNLYQHGWDERNGGNVSYRLTAAEIAPYGDV HEVKRNLPIKFDASELAGQYFLVTGTGRYFKNVKDFPARDTGLVQIAKDGHSVDLLWGFN DGGQPTSEFPSHLMTHIQRLKQDPNQRVVMHCHPTNLVAMSFTLPLEEKLFSRILWKMQA ESIVVFPEGIGVLPYMTPGTNEIGQATAQKMADFRIVMWPQHGIFGAGDSIDETYGLIET VEKAATIYTAIQAQGGRIINEITDENLEQLAKRFDLTPNLAFLHGDSLISQVTLKV >gi|225002557|gb|ACIZ01000022.1| GENE 130 136207 - 136470 160 87 aa, chain + ## HITS:1 COG:no KEGG:LC705_02669 NR:ns ## KEGG: LC705_02669 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 87 1 87 87 162 100.0 4e-39 MKKKPSVLDQLPELIADPETTGPELEILKHAEIRRQRGNNEEGIAFEIRTKLQPLAIGQK LSPKVVDFLTAISARYLGMGNRGNIIF >gi|225002557|gb|ACIZ01000022.1| GENE 131 136563 - 137357 483 264 aa, chain - ## HITS:1 COG:YPO0120 KEGG:ns NR:ns ## COG: YPO0120 COG1349 # Protein_GI_number: 16120465 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Yersinia pestis # 9 253 5 249 252 130 30.0 3e-30 MSQSPAKFERLNEIIQILRETPEISIAQLSKQMFTSKSTLRRDLIELENSNIIRRHYGTV QLLQGNNLEFTYEKRRNENARLKRVISRQIAAKIPSKAAFFIDGSSTFFSLPELLHEQVG LHVITNNVNMGMQFNSLNNVETIILGGKMAPRTASTLGATTINEIQSFRPDFALLSIGSI DADGIYVADPEQAAVKEAMIDAAKCVILGIDSTKFNQSDYIRITNMDQISEIITDTQPAP EYGNLFDDHHIQLTYPKAHHHLAD >gi|225002557|gb|ACIZ01000022.1| GENE 132 137563 - 138042 526 159 aa, chain + ## HITS:1 COG:lin2202 KEGG:ns NR:ns ## COG: lin2202 COG1762 # Protein_GI_number: 16801267 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 1 152 1 153 155 88 32.0 4e-18 MDYSTIIHKQLIFLNENQPDRQHLFRAVAEKLQAAGYVKKTYEAALNRREDEFPTGIVFP EISVMLPHADPEHVIKPFMAIVKNAQPVRVLQMGYNEPEDATAMFFLGITDSSQQVGLLQ IFMDLLQNQDFVAKFKATNDRDAMYQLFVDTFEAQTTGK >gi|225002557|gb|ACIZ01000022.1| GENE 133 138064 - 138384 390 106 aa, chain + ## HITS:1 COG:lin2201 KEGG:ns NR:ns ## COG: lin2201 COG3414 # Protein_GI_number: 16801266 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Listeria innocua # 1 99 1 91 91 59 35.0 1e-09 MAKIVVACGSGVASSEATASRIKDFFESHNVKGVSVDATDFKQLPEVLHNYDVYVWIAKP NQQLEELAKENNIAVVNGMPIFMNMNPEKSYKQIIQALKNMQAAGK >gi|225002557|gb|ACIZ01000022.1| GENE 134 138457 - 140025 1544 522 aa, chain + ## HITS:1 COG:lin2200 KEGG:ns NR:ns ## COG: lin2200 COG3775 # Protein_GI_number: 16801265 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Listeria innocua # 1 439 1 439 449 413 49.0 1e-115 MTILKDVVNYILNLGGPVFVPLIMLILGLVAGLKFKKSIVAALTLGVAFSGMTLVVNYMM DAISPAAKAMSKLFHLSLNAIDAGWTGVAAITWSYKSAFLFFPLLLAINFVMLTFNWTKT LNVDMWNVWNKIFTYVVVLYFTHNAFFGFLVAGIQIVFELKAGDMWHRHIEDLTGMPGVT VPHFITLFAVILQPLNKLLDFIPIMNKPFDADALQKRIGVWGDNTVMGALIGVLLGFGAG YSVSGSLNLAIKAATAMTLFPMISKLFMTALSPIADAMSGFMQKHFKGREVYIGLDWPIL AGRNELWVTVIILVPIMLVFAMILPHNTVLPFAGIINLSFVNAALLLTGANLLRMITLGI ITTPIFLYGATYFAPVITNLAKSTGTVKVQAGQQLSWSTFEGPDFRLFFAQAFNGKWWAI ALAVLWTLGFIWLYRDQNKIKLPSQRYGTLTTPAVATTSSTSTADSADADVDLDNLSGLD FSDAKASNESKQSAAKNDDDLDDLDGLDFSQTSHKKKGDQGE >gi|225002557|gb|ACIZ01000022.1| GENE 135 140018 - 140254 192 78 aa, chain + ## HITS:1 COG:no KEGG:LC705_02664 NR:ns ## KEGG: LC705_02664 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 78 1 78 78 139 100.0 4e-32 MSKTLASFLVFIDTIGVSIALLGGSVGLCLLMGLVTIVLYSKVNPVLFGDYDRKRRERIN QRRKELLAQRVKNGGFSK >gi|225002557|gb|ACIZ01000022.1| GENE 136 140251 - 140979 802 242 aa, chain + ## HITS:1 COG:lin2198 KEGG:ns NR:ns ## COG: lin2198 COG0235 # Protein_GI_number: 16801263 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 6 221 2 201 216 173 42.0 2e-43 MTEQYVFENERKDLAEVAREMFVRKNTNVAGGNISVRITADKDIDYGSIHIKAGKDYLIM TPTMMSEAWYAKLQPTQILVVDLETGKQIDGVGRLTREINMHEEAYRANDKIRCVYHSHA EESMFWATAGLDMPNVTEVTEEVGPIRVLPYAPACSKELADTVYNGLKAVGDAAKEHIFL LNSHGVLITSEDLHHATEILETVEWNAKIAYQQTVFMKLGLLDSYQSCGKASDGMLKEQV QA >gi|225002557|gb|ACIZ01000022.1| GENE 137 141211 - 142593 1023 460 aa, chain - ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 12 455 12 452 454 261 40.0 2e-69 MTRKVTPKLYLSILATGLMAFCGVLIETAMNVTFPTLMRQFNVDTGTIQWLTTGYLLIVA IIVPISGFLKRRFTTKQLFLTASAFFILGLALCSVANSFAILLVGRLIQGCGTGIALPLM FNIILEQAPLEKIGFLMGIGTLVTAIAPALGPTYGGVLVDINWHLIFIFLLFVMIAALIM GLFSIQQVSETVHLHLDFLAWLFIAIFFATAILGLNSIEHQPGRALIFAVIAILSLGAYT MRSLHVKEPLINLRLFKNLPFDLHMTTFLIIQIVNVGFAFVLPNYLQLVNHTSSLTAGLL LLPGAALGACMAPMSGKLYDKLGPGRPIFIGLCLQLIGIVWLLLEALTAAPVIVLIGYAF IMLGTGFSMGNIMTSGQAQLHQEQTTDGNAIFNTLQQFAGALGTAVVSLIMALAQAGSTS AHNTAIGSQHAFGFLLLLTLVGDVAIFFGLRRRRGETTGK >gi|225002557|gb|ACIZ01000022.1| GENE 138 142726 - 143163 421 145 aa, chain + ## HITS:1 COG:CAC3413 KEGG:ns NR:ns ## COG: CAC3413 COG1846 # Protein_GI_number: 15896654 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 3 140 5 143 143 73 32.0 9e-14 MTVSLGILVKKLNNDLQRYADREAKQLGLTQVQMSIIDFLARQGTKRPLYQTDVEHEFNI QKSSATALLQLMERKELIVRVPSKQDGRYKAIQLTEKSQKVAAYIRHFFDQNDAFLRNAL GEDAEVVVNALEKLQTTMADKLADH >gi|225002557|gb|ACIZ01000022.1| GENE 139 143226 - 143657 263 143 aa, chain - ## HITS:1 COG:no KEGG:LC705_02660 NR:ns ## KEGG: LC705_02660 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 143 1 143 143 237 100.0 1e-61 MSDYPVPTYTTTVTQSDVTLIATVTVIGRDLLITITGGDHPHIGDVLTLTKDQPIQTIRY PSHDNRFHKDDLLALPSAKALQPLLPGSCTILAGLHIDHISKVQIQAALDLSHKLAPELM TWLKHQTFATSRPHYYGPDESPA >gi|225002557|gb|ACIZ01000022.1| GENE 140 143675 - 144586 186 303 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 5 258 1 248 305 76 25 8e-13 MVNKLNFEDLKIFVALYELKSFSKAAVVLHLSQSALSKRIQHIEAILGSKLVDTSNHRRM LVTEAGERFFFHASKILHQVELMNTDLNSLKSLSNGVLTIGAVPILGQFGISRLINDFAA QFPKLALHVVEQEGISILKQLLTGDLDMALLRDTQAEVLSTREYVKLDLAKDELQVILAK TNPLAKRPSLSAKDLAATTIVSLLSGSGVFEPMQAFFADRHIAPKIIFSSPHIETLLGMV EGSRHVTFLFRQSYQPFANSNFVAKSLTPNICSHLQLVYRRTSNPAILKFADYLSQQVTA EKG >gi|225002557|gb|ACIZ01000022.1| GENE 141 144732 - 146123 1225 463 aa, chain - ## HITS:1 COG:MTH788 KEGG:ns NR:ns ## COG: MTH788 COG0471 # Protein_GI_number: 15678812 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Methanothermobacter thermautotrophicus # 18 454 1 434 443 82 24.0 1e-15 MKKVLNKQSIGFLIGIAVGLIVYLAPLSGINEKAQMDLALSLMTVVWWAFQIAQPAYIGG IYLMLLILTNVATPTQVFAGSWTKSIMWLVMGAYLIAGAVRESGLGERIAYAFIIKFVRS WTGIIVSIFALTFILALLIPHPWPRAFLIMSVMDVVATSAKMPQQDRAKLGLAVFAASCP LSGAFLTGDTSLNPLAIADSGKSVNFVQYFIYMGVPMIIAAIITMLLFLFLFKPTKKVTI DLDVLKAKQADQGAMTHKEIRVIVWLVIAIGLWLTSGITGIDVGWLTLIVALLMSLPVIG EVLTAKSWSGVPVNVLVFLTSAIAIGQVGDFTGMNKWIAQTILPSALPHNLYLLALVITV FAMIIHMFMGSVIAVMGITIPAIIAATSSLGVNPLAISLIVFSVVNLHYILPFHNLAILV GSDPETGGGYTQKDVMKLGIPLTAVMFIVALVEVFWFQLTGLL >gi|225002557|gb|ACIZ01000022.1| GENE 142 146120 - 146692 474 190 aa, chain - ## HITS:1 COG:STM2921 KEGG:ns NR:ns ## COG: STM2921 COG0163 # Protein_GI_number: 16766227 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase # Organism: Salmonella typhimurium LT2 # 3 186 2 185 197 202 52.0 3e-52 MKRIIVGITGASGTIYAVNLLQHLHRLPDVEVHLVMSAWAKQNLSLETDMKQSELEALAD YVYPVQNQGATIASGSFLTDAMVIVPASMKTIAGIAMGFDDNLIGRAADVTIKEQRQLII VPRETPLSPIHLDNLAKLAHIGVQIIPPIPAFYQHPQTIQDLIEHHTMKLLDALHIKTET ASRWNGASLR >gi|225002557|gb|ACIZ01000022.1| GENE 143 146702 - 148177 1287 491 aa, chain - ## HITS:1 COG:MA0246 KEGG:ns NR:ns ## COG: MA0246 COG0043 # Protein_GI_number: 20089144 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases # Organism: Methanosarcina acetivorans str.C2A # 58 478 40 417 422 150 31.0 6e-36 MTASPWDLRKVLDELKQDPQQYHETEVQVDPDAELAGVYRYIGAGGTVERPTQEGPAMMF NNVVGFPTTRVLIGLMASRKRVGKMFHQDYHTLGRFLNKAVLNPIQPVTVEESAAPAHEV VAKASDPDFDIRKLVAAPTNTPQDAGPYITCGVVLGSNMAKTMTDVTIHRMVLEDKDTLG IYIMPGGRHIGHFAEEYEKANKPMPVTINIGLDPAITIGATFEPPTTPLGYDELGVAGAI RQEPVQLVQAVTVNEKAIARSEFTLEGYIMPNTRIQEDINTHTGKAMPEFPGYDGDANPA LQVIKVTAVTHRRDHPIMQSVIGPSEEHVSMAGIPTEASILQLVDRAIPGKVKNVYNPPA GGGKLMTIMQIHKDNPADEGIQRQAALLAFSAFKELKTVWLVDDDVDIFDMNDVVWTMNT RFQGDQDIMVLPGMRNHPLDPSERPQYDPKSIRVRGMSSKTVIDGTVPFDMRDQFKRAAF KKVSDWQKYLK >gi|225002557|gb|ACIZ01000022.1| GENE 144 148740 - 148859 86 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSVADALMLMLVFGDFVLSLIALIITIMLIIQDNQKDRR >gi|225002557|gb|ACIZ01000022.1| GENE 145 149145 - 150677 1482 510 aa, chain + ## HITS:1 COG:L0014 KEGG:ns NR:ns ## COG: L0014 COG0554 # Protein_GI_number: 15673228 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Lactococcus lactis # 4 497 5 498 498 728 69.0 0 MADSYIMAIDEGTTSTRAVILDHAGKMVGEAQKEFTQYFPKPGWVEHDANEIWEAVLSTI ADTFISSGVQPRQIAGLGITNQRETTVIWDKTTGLPIYHAIVWQSRQTNALAEALRQAGH GKMIHEKTGLLIDAYFSATKIRWILDHVPGAQERAENGELLFGTIDTWLSWKLSGGAIHV TDYTNASRTMLFNIHTLDWDDEILQLLHIPRAMLPEVRSNSEIYGTGAAYHFFGSTVPIA GMAGDQQSALFGQLALAPGMVKNTYGTGSFIVMNTGDKPKMSANNLLTTIAYGVNGQINY ALEGSVFVAGSAIQWLRDQMGLVAQSPDTQQAAEAATSDDEVYVVPAFTGLGAPYWDAEA RGAVFGLTRGTTKDDFIKATLQALAYQTRDVVDTMYKDTQIAVPALRVDGGAARNDYLMQ FQADILNKPLERAANLETTAMGAAFLAGLAVGFWQDTDELKQIFKIGKRFEPRMTPARRE NLYAGWQQAVAATQMFKHRPLPRTSTANNE >gi|225002557|gb|ACIZ01000022.1| GENE 146 150739 - 151491 769 250 aa, chain - ## HITS:1 COG:L47971 KEGG:ns NR:ns ## COG: L47971 COG1737 # Protein_GI_number: 15673967 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 243 1 239 244 134 34.0 1e-31 MATLSPTEAYLWDYIENHQQTVVNLSITQLSVAANVSPATIVRTMKKKGFNGYTEFRHDL LKRIGDTEPFGILDQVDDQIKKVIMQNQIEVYNTLDNLKVSVIEDSVQLLAKAEIILIFA RGLSESIASEVTLKLQLLGKYAEFFSDPNIIQTIAGQISPHAVAITITLNGETPELVAAA KTLAARDIPQIILTTNAQASIVKYADELFVGYKSKAAYFDKYEVASRLPLQVMSRILLDS YVVRKRGQKN >gi|225002557|gb|ACIZ01000022.1| GENE 147 151640 - 152569 731 309 aa, chain + ## HITS:1 COG:STM3254 KEGG:ns NR:ns ## COG: STM3254 COG1105 # Protein_GI_number: 16766552 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Salmonella typhimurium LT2 # 1 307 1 304 304 171 37.0 1e-42 MIYTLTLNPAIDLFIKTQTMAPNTVNRTDSYDIQANGKGVNVSCILKRRGVDNVALGVGG GFTLDYIADFLTEQGIRNHFYKDAGFTRINVFTRVVSDHNEYKLVNPGPEISAETLKQLY QQLTTLGADDWLCVSGSFARGIEPSFLLQLGKLSRENGFALIIDSSYPEAVKALAYQPLL VKPNDAELMSWFNQSGEADLATMVKLGHKALAAGAQNVLVSLGAAGALFMNQDVTLVGNA PKIDVLNTAGAGDTMLGTFLAGLYQKQDLADTLKLAIAAGSDTARRAWITDFTETDELLT QIEIKKLEG >gi|225002557|gb|ACIZ01000022.1| GENE 148 152573 - 154555 1882 660 aa, chain + ## HITS:1 COG:STM3255_2 KEGG:ns NR:ns ## COG: STM3255_2 COG1299 # Protein_GI_number: 16766553 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Salmonella typhimurium LT2 # 133 478 1 343 350 353 52.0 5e-97 MAKYDLIAATGCATGIAHTYMAQEALEQAAKKMGLTIKVETHGQTGVDDPLTQGEIDGAK GVVIASDIDVDADRFAGKPLVNVPVAAGIREPDKLIKEALSSAPVYMPKGGAAKASADEN VETSTAGIGNKIYTSLMNGVSHMLPLVVAGGVLIAISFFWGIYSADPKNAEYNQFAAMLN SVGSAAMGLMVPVLAAYIGEAVAKRSGLIVGMAVGMIAYNGGQGSGFLGAIVGGYMAGLV ILMLQKVFAFMPDKEFRGLKAIFLYPVLGVFIAGSIMYLINTPMKALNLGLMAWLKGLES SSPIILGIVVGVMCAADFGGPINKAAYLTGTALLAQGNYFFMAGVSAACIAPPLATTISV LLNPKAYNRDERSAGYVNALLGSTHITEGAIPFAAKNPLMNIPAFMVGSAIAAVLTYMSR IQVPAPHGGFIVLPLVNKPVLWVAWILVGAAASGVLLAMIAGHSAKKRGVKSGVVEAALA TEGAADDVPVAHVAVSSARNQPAPDADQSQQTFDPSEILNKEYIEVNVPAKTRDDVLHYL ANMAVKNDLATDADAVFNKYVAREKEGSTGMEKGIAIPHAQDATIKRSAMLVLHLAQPVE WKTFDGKPVNAVISFLIPEHDSGSHLKYLSSTAKLLTHEDFVKAFQDAKTPDALYELFKR >gi|225002557|gb|ACIZ01000022.1| GENE 149 154750 - 154983 67 77 aa, chain + ## HITS:1 COG:no KEGG:LGG_02646 NR:ns ## KEGG: LGG_02646 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 51 1 51 84 79 78.0 3e-14 MAKAGVYGWKIAARTEVFFWGQCGGFILLSITRSQSQQSAHKDLEPKWPKPVFMDGKLQQ GQKYSFLGNSVALFCFL >gi|225002557|gb|ACIZ01000022.1| GENE 150 155494 - 155949 254 151 aa, chain + ## HITS:1 COG:no KEGG:LC705_02650 NR:ns ## KEGG: LC705_02650 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 151 7 157 157 291 99.0 6e-78 MARVRRPDGLVLDFRLPKDITHAIKVSPQTDWFERLRGGLIVAPMAPYVGKGKTAFFIGR IERVYYSSRQLKRFTRSQFLLPDVWREQDLLESFTFLRHDHAWLNRLYIKDDLRYWYHDA NSHFLANVRDLHCKLVYHRFQSRKQRLLPNF >gi|225002557|gb|ACIZ01000022.1| GENE 151 156013 - 156714 737 233 aa, chain - ## HITS:1 COG:lin0786 KEGG:ns NR:ns ## COG: lin0786 COG1811 # Protein_GI_number: 16799860 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, possible Na+ channel or pump # Organism: Listeria innocua # 1 232 1 233 233 190 49.0 2e-48 MMFMGSIVNGLTIIGGSLLGLILHNISANAKDTITKSLGLGTFALGIQMALQTKSFIVII ISLCLGGLLGEWLHIEDGMNHLGLKLQERFARNNSHFAEGFVTATLIAVIGAMSILGAIQ AGVSGDNATLYTKAVMDGFMAIMMTASLGIGVLFSAIPVILYQGTITLLASFLVQFIPKT LMATSLREIGAIGGLMILGIGLNLMGITKIRISNLLPGLVVLIGILTGQYFLS >gi|225002557|gb|ACIZ01000022.1| GENE 152 156939 - 158150 1246 403 aa, chain + ## HITS:1 COG:BH2383 KEGG:ns NR:ns ## COG: BH2383 COG0468 # Protein_GI_number: 15614946 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Bacillus halodurans # 25 351 2 324 349 399 60.0 1e-111 MYDIKETSMAKKTTTKADNKKSDATDRETELEKALQKITKAFGEGAVMKMGDRPELKIDV VSTGILSLDLALGVGGLPRGRIVEIYGPESSGKTTIALQTIAELQKTGGKAAYIDAENAM DPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDVVVIDSVAALVPKAEIEGAI GDSHVGLQARLMSQALRKMAGTINNTNTLVIFINQLREKVGIVFGNPEVTPGGRALKFYA SVRIEVRKGQQVKDGKNVVGFASKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLAT DKDNDLDVITKSGSWYNYGKERLGQGLVNASHYLDEHPEVSKEIEAKIREQSAPKPKEED EKKDTAKDEKTTADKKPEEKPTTDKKPDDKKDDPSSFGVDRLV >gi|225002557|gb|ACIZ01000022.1| GENE 153 158356 - 158682 308 108 aa, chain - ## HITS:1 COG:no KEGG:LGG_02642 NR:ns ## KEGG: LGG_02642 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 108 3 110 110 215 100.0 4e-55 METLYKGQPADVWEITKTGAQPDWVKDAFSQNYLYWLDNRVRILMWALTPPNKKNLKFVA SGSLGGGVDALGVYAYGDSGDFLDATNQRVVSRERFFKQYQILKSNEA >gi|225002557|gb|ACIZ01000022.1| GENE 154 159044 - 159349 413 101 aa, chain + ## HITS:1 COG:no KEGG:LC705_02646 NR:ns ## KEGG: LC705_02646 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 101 1 101 101 177 100.0 1e-43 MEKKQELIAKMLELQHLFEKQSDATSQAIVASIKQAIDKVADKRIQGVNIAPQVLPIGYF IRDEMRDHQYQLTLAQRTVLFDMEGMAEAIANKYFSGIPSF Prediction of potential genes in microbial genomes Time: Wed May 25 19:35:19 2011 Seq name: gi|225002556|gb|ACIZ01000023.1| Lactobacillus rhamnosus LMS2-1 contig00026, whole genome shotgun sequence Length of sequence - 6316 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 6, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 213 - 1415 987 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Prom 1500 - 1559 5.5 2 2 Tu 1 . + CDS 1703 - 2605 787 ## COG0583 Transcriptional regulator + Term 2651 - 2702 0.2 3 3 Tu 1 . - CDS 2611 - 3093 340 ## COG0328 Ribonuclease HI - Prom 3159 - 3218 4.2 + Prom 3024 - 3083 2.0 4 4 Op 1 . + CDS 3187 - 3999 888 ## COG0561 Predicted hydrolases of the HAD superfamily 5 4 Op 2 . + CDS 4043 - 4732 700 ## COG0406 Fructose-2,6-bisphosphatase + Term 4894 - 4924 2.1 6 5 Tu 1 . - CDS 4729 - 5418 679 ## COG3619 Predicted membrane protein - Prom 5577 - 5636 6.2 - Term 5563 - 5607 8.0 7 6 Tu 1 . - CDS 5708 - 5971 245 ## LGG_02633 hypothetical protein - Prom 6031 - 6090 5.5 Predicted protein(s) >gi|225002556|gb|ACIZ01000023.1| GENE 1 213 - 1415 987 400 aa, chain - ## HITS:1 COG:PAB2227 KEGG:ns NR:ns ## COG: PAB2227 COG1167 # Protein_GI_number: 14520410 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Pyrococcus abyssi # 3 388 16 405 410 308 38.0 1e-83 MKFAKRTQKTGNSGLEDLFAASGPNVISFAGGYPDRSLFPTQQLNQAFKHSFNSGDTELL QYASTQGYLPLREKIAARLRATGIPTRADNIMMTQGAQQGLDLVARLMLDSGDGLVVEAP TYLGALAAFNAYQPTYYEIPMQDDGMDINALQRVLMSHKVKFIYTVPDFQNPTGVVMSVA KRKALIRLANQYDVMILEDNPYRDLRYDGKPLPTIKSFDTQGRVVYLGSFSKILSPSLRM GWLVAAPDLLQELLALKGGSDLESSNLTMHGIDAYMAENDLDAHITEIQNRYREKKNAMV AAMNRYLPDEAHFTNPDGGFFLWLTMPAGFDMGAFMKQHLLPESNISYVPSANLYATSAQ VNGARLNFTGPTLEQIDTGIKALGDALKTALQHHLVAEQA >gi|225002556|gb|ACIZ01000023.1| GENE 2 1703 - 2605 787 300 aa, chain + ## HITS:1 COG:BH2117 KEGG:ns NR:ns ## COG: BH2117 COG0583 # Protein_GI_number: 15614680 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 6 288 6 282 290 135 33.0 1e-31 MGNFSYEVFSKVVERGTLAQAAAELNVTPSAVSHSISQLETELGFPLLIRNRTGVTLTED GAQVLPIIQSIQNLEEQLSQVADNINGVNTGRIRIGAFSSVSTNWLPTIIQRFKKRYPHI EISVIQGTFNRIVEAVRLGTVDMGFSSLPVGPGVVVEPLLKDPIYCITPKRFKPKNGKTV TQADVEKRNFILQQIDYDRDTKNALDRYHVSTNTINYSIDDQSILSMVESGLGLGILPKL ALQKLVGDVNVYPFSEPFARTLCLVINPTIKKSPSVQRMQQVIHTFLAETYGEAFLGNQG >gi|225002556|gb|ACIZ01000023.1| GENE 3 2611 - 3093 340 160 aa, chain - ## HITS:1 COG:AGc1417 KEGG:ns NR:ns ## COG: AGc1417 COG0328 # Protein_GI_number: 15888119 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 31 159 20 146 146 96 44.0 2e-20 MAESIVLYTDGGNRNTGNHAGGSVRPTDKSAWAALLIYGEHEKMLSEGDYGRTNNYMEIM AVIQGLKAIKRTDIPIDVYSDSAYVINTMQQRWWVKWQQNGWRNHGKPVKNAELWQALLH QMNRFDQVTFHKVKGHATNRNNNRVDEALNQTMDRLDDRT >gi|225002556|gb|ACIZ01000023.1| GENE 4 3187 - 3999 888 270 aa, chain + ## HITS:1 COG:SP0286 KEGG:ns NR:ns ## COG: SP0286 COG0561 # Protein_GI_number: 15900220 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 265 1 267 270 166 36.0 4e-41 MERYLIALDLDGTTLNTEGQLSAGTIAVLRAAQAAGHLVVITTGRPDAISEQFYDTLHLQ GPMINFNGALIHVPHQQWQYEKEVTIPISVALSLRQLSQRFTFKVMVAEGKRLLVADRPY ANIPFLPDRLHPDALLDEHGLRQAPISVTMFMEAKTFEPVSQQVAALYPHLAAKTWGAWS GDYTALEVTSRNTSKSRALAYVAQRYGIDQAHIIAFGDDMNDLDMLQFAGHGVAMKNARP AILEAADAQTPSDNDHDGMADYLADYLKLA >gi|225002556|gb|ACIZ01000023.1| GENE 5 4043 - 4732 700 229 aa, chain + ## HITS:1 COG:L174407 KEGG:ns NR:ns ## COG: L174407 COG0406 # Protein_GI_number: 15672931 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Lactococcus lactis # 1 229 1 229 231 102 31.0 8e-22 MTTLYLVRHGQTEFNVQKRVQGMADSALTPKGIADAKALGRGFQLAGVHFDAAFASDLTR AVDTAHFILSGLGEPLPVTRLMGLREENYGKFEGQLANDFSLATMGIANFHDALANREIT LAQTADAAFAANMDQHPNPAETNRMVQERLDRTLRAIAVEAEAKGWERVLVVSHGTAALM WLNYIHYNIDGREMLDNASVTKLMWLNDRFRVTDFNDLSFLHHGQEALG >gi|225002556|gb|ACIZ01000023.1| GENE 6 4729 - 5418 679 229 aa, chain - ## HITS:1 COG:MA1282 KEGG:ns NR:ns ## COG: MA1282 COG3619 # Protein_GI_number: 20090146 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Methanosarcina acetivorans str.C2A # 2 222 11 231 240 125 35.0 7e-29 MQTTTYPIHERLLIGTLLTAAAGSFDAYTYLLHGEVFAGLQTGNVILLGVHLGQGQWHTA IRYLVPILAFMFGTMAARALQLHASHRPQLLAEQRWILRYEIVWLLVVSLLGKWLPDLLA SAIVSVIAAAQLQEFRRLKGGPFTSLMMTGNLRTAAQSLYDGFIRGQQKGRASAATVGTI ILSFALGAGVTGILTHAIGTYALAGATLVLILIDLLLWRDQKTLPQSTV >gi|225002556|gb|ACIZ01000023.1| GENE 7 5708 - 5971 245 87 aa, chain - ## HITS:1 COG:no KEGG:LGG_02633 NR:ns ## KEGG: LGG_02633 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 87 1 87 87 162 100.0 3e-39 MEKEKLHLGDAVVCQVKEDMEAPFTGKIEKVYENSALLTITDYADQDRQNASELNFKIVA NFHAMTKNLGGGTVLAFPPETEEDRKK Prediction of potential genes in microbial genomes Time: Wed May 25 19:35:26 2011 Seq name: gi|225002555|gb|ACIZ01000024.1| Lactobacillus rhamnosus LMS2-1 contig00027, whole genome shotgun sequence Length of sequence - 12202 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 9, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 51 - 110 4.8 1 1 Tu 1 . + CDS 133 - 477 472 ## LGG_02632 hypothetical protein + Term 559 - 603 9.1 + Prom 551 - 610 2.5 2 2 Tu 1 . + CDS 668 - 1480 972 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 1522 - 1568 6.4 + Prom 1510 - 1569 5.0 3 3 Tu 1 . + CDS 1589 - 2593 1171 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Term 2637 - 2679 7.2 - Term 2625 - 2666 3.2 4 4 Tu 1 . - CDS 2703 - 5231 1695 ## COG0178 Excinuclease ATPase subunit - Prom 5289 - 5348 4.6 - Term 5334 - 5369 5.0 5 5 Tu 1 . - CDS 5400 - 5816 428 ## LGG_02628 MarR family transcriptional regulator - Prom 5851 - 5910 9.9 + Prom 5884 - 5943 5.9 6 6 Op 1 . + CDS 5968 - 6612 594 ## COG1418 Predicted HD superfamily hydrolase + Prom 6634 - 6693 2.8 7 6 Op 2 . + CDS 6824 - 8425 186 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 8648 - 8686 6.2 + TRNA 8564 - 8639 76.8 # Thr GGT 0 0 + Prom 8566 - 8625 79.2 8 7 Tu 1 . + CDS 8757 - 9404 640 ## LC705_02629 metal-dependent membrane protease + Term 9498 - 9539 6.2 - Term 9477 - 9535 12.7 9 8 Tu 1 . - CDS 9548 - 10246 603 ## COG0640 Predicted transcriptional regulators - Prom 10280 - 10339 5.9 + Prom 10280 - 10339 4.2 10 9 Op 1 45/0.000 + CDS 10400 - 11158 431 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 11 9 Op 2 . + CDS 11139 - 11903 717 ## COG0842 ABC-type multidrug transport system, permease component + Term 12113 - 12169 9.4 Predicted protein(s) >gi|225002555|gb|ACIZ01000024.1| GENE 1 133 - 477 472 114 aa, chain + ## HITS:1 COG:no KEGG:LGG_02632 NR:ns ## KEGG: LGG_02632 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 114 1 114 114 214 100.0 6e-55 MATSNTTIDQLNEAAQKTALETFAKFYLSRFFGDGLDVFSQLDEQGDLADINHYLLDNRT LTREELTSGLLTHRSGNLLDLLKQVNVTFNAQGAPETPWAKWYADQIEGLPQGL >gi|225002555|gb|ACIZ01000024.1| GENE 2 668 - 1480 972 270 aa, chain + ## HITS:1 COG:lin0029 KEGG:ns NR:ns ## COG: lin0029 COG0561 # Protein_GI_number: 16799108 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 270 1 269 269 151 35.0 1e-36 MTQYLIVSDIDGTLTANHHDVTEKTTQAIANAVTAGAAFYVATGRMHALAEVVAHQFQPY ANIIASNGAVYDFSGERVHHTLGAAALTAVEEVATDLGLNALYFSDDTVYFTGTLPPAIE AAARRFAPSSVAIEVVALPSAAALLTHAATITNGIIFGPSDSQALAAGKTALEARNVLHV SASEHTNLELIPKHIDKANAVRELQAKTGIDAAHTIAFGDGLNDLGMLQAAGISVAMGNA VPEVKRVARYVTDTNVDDGVANFLTDFFEK >gi|225002555|gb|ACIZ01000024.1| GENE 3 1589 - 2593 1171 334 aa, chain + ## HITS:1 COG:AGc2811 KEGG:ns NR:ns ## COG: AGc2811 COG0667 # Protein_GI_number: 15888849 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 12 329 1 313 331 320 49.0 3e-87 MYHAAADRYEKMPVRHAGKTGLMLPVISLGLWQHYGNLDPFGPRRSVILDAFDRGVFHFD VANHYGNGDREPGFGSSERLLGQILATDLKPYRDELVISTKVGYEIHPGPYGVGTSRKAV IQGLNDSLKRLQLDYVDIYYAHRFDDTVALEETVNALDQTVRDGKALYIGISNYDTKQTK EAIAMFKDLHTPFVLNQYSYNMFNRTAETSGLIDALKADGAGLIAYGPLSEGLLSDRYLK GIPDTFKIHPTNKATFAKGKEAVVKQLNALNEIAHDRDQTLSQMALAWLLRDPVVTSVII GTTSVEHLQDNLKATEHLTFTAEEIQQIDDILNA >gi|225002555|gb|ACIZ01000024.1| GENE 4 2703 - 5231 1695 842 aa, chain - ## HITS:1 COG:DRA0188 KEGG:ns NR:ns ## COG: DRA0188 COG0178 # Protein_GI_number: 15807854 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Deinococcus radiodurans # 7 836 96 921 922 503 36.0 1e-142 MAIPDHISVRGAYVNNLKHLNVDIPLNKLVAITGRSGSGKSSLAMGVLYAEGMRRYMSAL STYTRRRLGQTSPAAADSVKHIPSAIALRQRPVVPGIRSTVGTATEALNVIRLIFSRLGS PVCPNGHRVPPTLDIAKAMDLPNDGESGMGMITCPTCGVHFMAFAAEDFAFNSTGACPTC GGTGQARTLAANRLIPDPTLTIRQGAVASWRLPGRNFMPYVAQAIGIDIDTPFQDLPEDQ QEQVWHGQRKKYAINIPSKTGKIFHMDHAQYENAFNAVEDSLATTKNERAIERLNRFYEF GVCPTCHGSRFAPKLLAQHLVDQNIAQVSDMTLTQLTDFIPKIYQWLPANMQALAHDIIK ELTQLLKPIMDLGLSYLTLSRAAASLSTGELQRIQLSRTLRTETTGVLYVLDEPSIGLHA ANVAGLLEVMHGLVDQGNSLVVVDHNTAIINAADQIIEIGPGAGADGGQILDQGSPAEIS HDANSLIAPFLTGKTPLIVRPQAGSAAIAKAKQLQLTVTNRFNLHHLNVQFPINCFSVVS GFSGAGKSTLIFDALVPALSATKDQPAPTFVRNLKTGGIRHVVAIDATPVGKNVRSTVAT YTDILDHLRHLFASLPAAKDKQYTSSHFSYNVKAGACPTCGGTGVINLDIQYLPDMQQTC PTCHGRRYNPEVLKIKWHERSIADLLDLDVDTALTVFKDEPTIVHTLQTLHDMGLGYLHL GESTPTLSGGEAQRLKLVAHMGRSQKDTLFVFDEPSVGLHPLDVQTLVAVFQRLLQTGAT VIAIEHDLDVIANADYVLDLGPKGGAEGGHVIAAGTPQAIAKQGHGETAKYLAAHLAAFH VD >gi|225002555|gb|ACIZ01000024.1| GENE 5 5400 - 5816 428 138 aa, chain - ## HITS:1 COG:no KEGG:LGG_02628 NR:ns ## KEGG: LGG_02628 # Name: not_defined # Def: MarR family transcriptional regulator # Organism: L.rhamnosus # Pathway: not_defined # 1 138 1 138 138 238 100.0 5e-62 MKKQYLSASQSVNQFNRLFSPVSTADIPLNQQNLLFWMATDSTPRTPTNLAKEMHVTKAA ITKASGPLLERGLLDKQPDPEDCRSFKLVLSEAGEKAVEDLGPEYLGNLERLYNELGEKK YLKLIKLLSQATGVTVKE >gi|225002555|gb|ACIZ01000024.1| GENE 6 5968 - 6612 594 214 aa, chain + ## HITS:1 COG:L1008 KEGG:ns NR:ns ## COG: L1008 COG1418 # Protein_GI_number: 15672047 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Lactococcus lactis # 1 211 1 212 216 162 40.0 3e-40 MIDWQILTEYAKKVSSQDHSGHGFDHIERVVANAKQLVAKTAGVDATVVVAAATMHDTYD DKLVADVGAAKAAAQQAMAAAGLTQVQIQAVTEIIDHMSFKANLGKHQPLSVAGQLVQDA DRLDAIGAIGIGRAFMYAGAHGGRMHDPALAPRTTLTASSYRGKDSTVINHFYEKLLKLK DQLNTSAAKQLAEHRQQVMLSFLDEFKAEWQGER >gi|225002555|gb|ACIZ01000024.1| GENE 7 6824 - 8425 186 533 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 341 527 16 209 245 76 30 1e-13 MTFRQYLFRLKWRFGVFILMYGLEISALTAVSIFTGNMITALTQFKVNAFVTAAIVMVVA TIFQLVMQTLTNIYQVSLQRRLNNDIRTEITKSIAAMPFEQYHARSDAVYTSWMTNDVNT INTQGLRNVGYLIQASWQVVLSIFVLLTYQASLFATTLVCAVLLITVPMIYRKKLSAAAA KWSQENEKLTNRITDILEGFNTLFMANRRHVMVDRVFHASNAAGHAQVGYIQFNMATQFL INLVNLGSQLFLLIQAGLLAYNRVIPVGAVVTIHSVAGTTFSGLTLMSFALTTVKSVAPI FDKFAKAIPSPQKPKEPVNGLEEGIHLQDVTFTYPHRKEPVLKDVTMTLTAGKKIAIVGP SGHGKTTLLRLISDVLADYQGQITWDAQNYQKLDPRSLRDQITYIDQAPYIFNDTIRFNL TLGQQVADDVLQHAIEAARLTTFMAQQEQGLDTVLEHNGADLSGGQKQRIALARGLIRQS HVIISDEGTAALDPKSGLAIEKLLVSLPKTTLIMVTHNLRPEIKDQLDQIVTV >gi|225002555|gb|ACIZ01000024.1| GENE 8 8757 - 9404 640 215 aa, chain + ## HITS:1 COG:no KEGG:LC705_02629 NR:ns ## KEGG: LC705_02629 # Name: not_defined # Def: metal-dependent membrane protease # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 215 1 215 215 348 100.0 5e-95 MQILRSIIQIFGVIVGFLFYSLAELALVRSELTWGMVGAIAAFIIAFGALIAALMVCYRR LYRQQSPLKVAHPVAVVLQGIGLLLLIQVTNSLIMQLTHAPLAANQSNLIKLVHTYPWGI KLLAVVGGPIVEEYLFRGLLMNSFGSLQKRSWQWVSVLVSAFAFGFAHVAGSRIDYNIFI YAALGAVLAWTYLRTRDMRYSIGLHILNNATILLV >gi|225002555|gb|ACIZ01000024.1| GENE 9 9548 - 10246 603 232 aa, chain - ## HITS:1 COG:BH0391 KEGG:ns NR:ns ## COG: BH0391 COG0640 # Protein_GI_number: 15612954 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 220 5 216 234 159 38.0 5e-39 MAKELPNITKIAVALSNHSKMLVLDSLMDKRGHTLLEIAREANIQPQTASYHLQNFINNG WVKMEKSGRFHYFFLVSDQVAALIEQFSPLSPSASTHTLTRALKVDKMRTFRSCYDHMAG KIGVLITDQLLADHLISEEPQAYQVTPDGLNFFEKGLNIDLETVQKKKRLFTVKCLDWSE RKHHLGGALGNAIFDAFSKQAFVERDPNTKRALYLTAEGKYFLHTELNCQFE >gi|225002555|gb|ACIZ01000024.1| GENE 10 10400 - 11158 431 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 4 221 12 230 312 170 41 4e-42 MKILQVEKVVKRYGNFEAVKGISLSLDRGKTLAVLGPNGAGKSTTLKMIYATTAITSGKI FINGIDIVKQPRLAKRTIGVVMQDDLLDTTLTVKENMIAHGILFDLTVKVAAEKAEQLLK FVGLSHYQNKATTSLSGGMRRRLVLARALINDPKLIILDEPTTGLDIQSRHVFWHRINDL KKRGVSILLTSHYVDEIEALADNVMIVDHGVALAEAPVKELPLKYGYATLEEAYLKMTNF DEGREDIEQTQD >gi|225002555|gb|ACIZ01000024.1| GENE 11 11139 - 11903 717 254 aa, chain + ## HITS:1 COG:mlr6166 KEGG:ns NR:ns ## COG: mlr6166 COG0842 # Protein_GI_number: 13475152 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Mesorhizobium loti # 15 253 22 261 262 126 31.0 5e-29 MNKLKIKGIGHVIYRDWMSFKKLFKISIFPNLFDPILYLVAMGLGLGSFVGQVDGMPYLK FITLGLIAGTAMNASNNESTVNAYIQMHLDKTYYEMSTGPISLPDIIVGQAIWAGIRSVI FGTLFMLVALLMGTISSFWAMLIPMVLFITGTLFGFLGLAFTLMAPSRDYLNYYTMLVIQ PMFMFSNTFFPLSHVASWLKQVGWFSPLTHAVGLIRGLADGNLSGQLANLVWLFVVLLII ALIPINLVEKKLVY Prediction of potential genes in microbial genomes Time: Wed May 25 19:35:36 2011 Seq name: gi|225002554|gb|ACIZ01000025.1| Lactobacillus rhamnosus LMS2-1 contig00028, whole genome shotgun sequence Length of sequence - 4830 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 259 - 1197 620 ## COG1275 Tellurite resistance protein and related permeases 2 2 Tu 1 . - CDS 1264 - 2091 551 ## COG0583 Transcriptional regulator - Prom 2120 - 2179 7.0 - Term 2159 - 2207 13.1 3 3 Tu 1 . - CDS 2215 - 4503 1813 ## COG3973 Superfamily I DNA and RNA helicases - Prom 4633 - 4692 3.7 Predicted protein(s) >gi|225002554|gb|ACIZ01000025.1| GENE 1 259 - 1197 620 312 aa, chain + ## HITS:1 COG:L181867 KEGG:ns NR:ns ## COG: L181867 COG1275 # Protein_GI_number: 15672360 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Lactococcus lactis # 1 250 17 267 324 163 41.0 4e-40 MAGLTLGLASLGNLYKLAGWQLVGDLTGIVAGLLFGLVLLKLCLTPLHAAGSLKDPIIAS VSPTFSMTLMILCTYFVAWGMPLPVATIVWLMAVAIHFGLMIFFVLRHLISQPKAWRMIY PSWFVTFVGLGVIPVTSSQFVPALGQPLFWMALVIYVALFPFVLHRLRHVPLPEATQPLL TIMAAPASLCLTGYLASFDHPNFWLATGMLIFAQSLYFITLVSIRQYTRLSFYPSFAAFT FPLVISATALTKYIAAFAQNGTVHDLMSVLQWGEWIAATLMLVFVTGHYLHFLRRIRKGV KAAAQDAQKVIE >gi|225002554|gb|ACIZ01000025.1| GENE 2 1264 - 2091 551 275 aa, chain - ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 271 1 271 272 155 33.0 7e-38 MFNLLRTFMAVYETRSFSLAAEHLFTSQPTVSHHIQQLEHELNVTLFERNKRSATVPTAA ADILYDFSGNMLAEWDKTKQALQNTTATTTVTLHIGISQSVAAVLFPSLARDLKAAFPYL QFDVAVLNSLQVVNQLESRRLDLGFIEQPLTLKGATRTTLCSDQLTVSGWPTGTWITREE GSGMRYYTTAYLQTTGITPKHLMTVNNNAMLRALVQNGVGQALLSDRIAPPEAPQQAIGK KFQRHFYLLQKPSAHWPHKQAMLDKIIDLAKVATK >gi|225002554|gb|ACIZ01000025.1| GENE 3 2215 - 4503 1813 762 aa, chain - ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 8 752 10 771 774 439 35.0 1e-123 MKNATKAEEQARVTAVIAKLKARLAAIHEQIEAAHRETSRIERAYGENTKVNVTEVDDQM ETNAAVQQQKVMVARAVENETILKHEGDRLTLLADNPYFGRIDIDEDGEPDTLYIGTATF IDEDGDFLVYDWRAPISSIYYNGTLGDVTYETPAGEQHATLKNKRQFQIEHGHIKTMFDT NETVGDEILQSVLGDQSDEYMKNIVATIQREQNDIIRDTSSDLLVVQGVAGSGKTSAVLQ RVAYLLYHSRSDLDADQMVLFSPNRLFANYISQVLPSLGEKNMRQATLFEFLANRFTGLH VETLFERYEHDAAGLPQAAETIRRFKEAPSYLQAIADYANDPDRVPHFIDVEFNGEVFFS ATTIANIYQSQPTLMKPIDKFTATKNALIKQLNARIHDEATHDWAQLRVSDLSQTELETL TADHEFATGEDEQQFVSEAIVAKAFAPIYDALYNDHFYDVFQDYQQFMAQIAAPVNAPIW QTMITAFSDGIEAHHLRLEDAAPLLYLRDLSTGSGQNSLIQYVFVDEMQDFSMAQLLYLK HAFPKAKLTLLGDAKQDVFTSNYQPSDFIHEIKDVFAGYKIRLITLNKSYRSTQPITNFA KALLPEHDHIQAFNRAGDMPEVLTVSSAEATAALSRSVTRLLTVDSTVAILTKDAKTAAQ LYATLKLDTPVTLLSANDHSLKNGCVILPVYLAKGLEFDAVVGWDISATTYRNEADRDIL YTLCSRALHHLTLVTLDAPSPLITALPTDLYRRTGDASEARV Prediction of potential genes in microbial genomes Time: Wed May 25 19:35:44 2011 Seq name: gi|225002553|gb|ACIZ01000026.1| Lactobacillus rhamnosus LMS2-1 contig00029, whole genome shotgun sequence Length of sequence - 27470 bp Number of predicted genes - 26, with homology - 24 Number of transcription units - 15, operones - 7 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 212 - 271 3.8 1 1 Op 1 12/0.000 + CDS 296 - 1828 1375 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 2 1 Op 2 1/0.000 + CDS 1828 - 2787 891 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 3 1 Op 3 1/0.000 + CDS 2793 - 4118 1288 ## COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes + Term 4162 - 4209 10.3 + Prom 4915 - 4974 2.6 4 2 Tu 1 . + CDS 5000 - 6226 630 ## COG0477 Permeases of the major facilitator superfamily + Prom 6263 - 6322 6.2 5 3 Tu 1 . + CDS 6383 - 6463 104 ## + Term 6708 - 6748 9.0 + Prom 6477 - 6536 3.3 6 4 Tu 1 . + CDS 6763 - 7779 1208 ## COG0180 Tryptophanyl-tRNA synthetase + Prom 7823 - 7882 3.2 7 5 Op 1 8/0.000 + CDS 7932 - 8540 589 ## COG1704 Uncharacterized conserved protein 8 5 Op 2 . + CDS 8549 - 9406 789 ## COG1512 Beta-propeller domains of methanol dehydrogenase type + Term 9426 - 9463 7.1 9 6 Tu 1 . + CDS 9949 - 11304 1309 ## COG0534 Na+-driven multidrug efflux pump + Term 11347 - 11397 6.5 - Term 11333 - 11385 9.1 10 7 Op 1 . - CDS 11438 - 11932 464 ## COG1247 Sortase and related acyltransferases 11 7 Op 2 . - CDS 11951 - 12775 623 ## COG0500 SAM-dependent methyltransferases 12 7 Op 3 . - CDS 12870 - 13802 729 ## COG4989 Predicted oxidoreductase + Prom 13980 - 14039 5.6 13 8 Op 1 11/0.000 + CDS 14190 - 15692 1264 ## COG0248 Exopolyphosphatase 14 8 Op 2 11/0.000 + CDS 15689 - 17851 1736 ## COG0855 Polyphosphate kinase 15 8 Op 3 . + CDS 17848 - 18789 916 ## COG0248 Exopolyphosphatase + Prom 18797 - 18856 2.7 16 9 Op 1 . + CDS 18882 - 19865 1063 ## COG4086 Predicted secreted protein 17 9 Op 2 . + CDS 19918 - 20193 404 ## LC705_02605 hypothetical protein + Term 20225 - 20284 12.6 - Term 20217 - 20267 15.0 18 10 Tu 1 . - CDS 20295 - 20804 661 ## COG1881 Phospholipid-binding protein - Prom 20828 - 20887 4.1 + Prom 20781 - 20840 4.3 19 11 Tu 1 . + CDS 20936 - 21862 902 ## LC705_02603 hypothetical protein - Term 21776 - 21823 6.9 20 12 Tu 1 . - CDS 21859 - 22005 64 ## - Prom 22039 - 22098 8.4 + Prom 22018 - 22077 3.5 21 13 Op 1 . + CDS 22224 - 22916 730 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 22 13 Op 2 . + CDS 22951 - 23547 443 ## COG3548 Predicted integral membrane protein 23 13 Op 3 . + CDS 23572 - 24477 909 ## COG0039 Malate/lactate dehydrogenases + Term 24562 - 24594 3.1 + Prom 24485 - 24544 4.9 24 14 Op 1 . + CDS 24635 - 25114 411 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 25 14 Op 2 . + CDS 25107 - 25919 543 ## COG1801 Uncharacterized conserved protein + Term 26004 - 26053 0.4 + Prom 25931 - 25990 7.2 26 15 Tu 1 . + CDS 26225 - 27106 714 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) Predicted protein(s) >gi|225002553|gb|ACIZ01000026.1| GENE 1 296 - 1828 1375 510 aa, chain + ## HITS:1 COG:SPy1134_2 KEGG:ns NR:ns ## COG: SPy1134_2 COG1732 # Protein_GI_number: 15675111 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Streptococcus pyogenes M1 GAS # 208 508 9 306 306 288 50.0 2e-77 MADLWRTIAERHGELLSALGQHIEISLIALILAVVIAIPLAVWVQTHAKVAAVLLQITGV LQTIPSLALLGLLIPFVGIGTLPAIIALVVYALLPIFQNTYIGLRDIDPSYEEAADAFGM SRLRKLFKVELPIALPVILSGVRTAMVMIIGTATLAALIGAGGLGTFILLGIDRNDAALT LMGALAAALLAIVFSWLLNLMQKINWKLSVGVVALAVFGLVGTQVYSRVTAPKETITIAG KLGSEPDILIHMYKELIQKADPDVGVTLKPNFGQTSFLYNALRTDKINLYPEFSGTVLAS LTKPSAAQQQQVAAGKNNYPLAKKLLARQGFTYLKPMAYNNTYALVVKASFAKRYQLQTI SDLAKIAPSIRAGFDLEFIDRQDGYKGIQSQYGLQFKVDSMDASLRYQALDRGQINLTDG YTTDAQLRQYHLVALKDDKGLFPIYRGAPLMRAAFAKQHPRLVAALNRLANHITEKQMQA MNYAVSVQNQKAATVAHRYLVQHGLLKEVR >gi|225002553|gb|ACIZ01000026.1| GENE 2 1828 - 2787 891 319 aa, chain + ## HITS:1 COG:SPy1133 KEGG:ns NR:ns ## COG: SPy1133 COG1125 # Protein_GI_number: 15675110 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 3 242 1 240 242 275 55.0 6e-74 MALISLEHVTKTYDDKPVVNDLSLQVDQGELFVLVGTSGSGKTTTLKMINRLVDPTAGVI KFAGKPLMAYKVRDLRWDLGYVLQQIALFPTMTVAQNIAVIPEMKGWSRQKIRTATDDLL AMVDLPPAEYRDRMPSELSGGQQQRIGILRALASRPKVVLMDEPFSALDPISRTQLQDML LHLHRAMKTTVVFVTHDMAEAMKLGDRIGVMHNGRLLQVDTPEAIATQPANDFVADLFKG AQANQGLQVTLSQLAPFAVEQSADHAVGGNLTLAEALPLLDAHETLRVKSDHGVFVIDTH SVVAYLASAFVDQDTETKG >gi|225002553|gb|ACIZ01000026.1| GENE 3 2793 - 4118 1288 441 aa, chain + ## HITS:1 COG:lin1472 KEGG:ns NR:ns ## COG: lin1472 COG1249 # Protein_GI_number: 16800540 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes # Organism: Listeria innocua # 3 440 4 445 446 327 41.0 2e-89 MAYDYDTIVIGGGPGGLAAAYGLAAKQRVLVIESDLWGGTCPNYGCDPKKMLYRGVEVKN AALRMNGFGISGTAKIDWPSLMAFKRSYTTGIPAGTLTGLTRTGIKTLYGRAQLLGQHMV KVGSQNVTGEHIVIATGHTPRFPDIPGANLLKTSRDFLDLDALPTSIAFIGAGYVSVELA NIAAAAGADVHIIGHSDRLLRAFPKVATEALKQLLLKTGIHFHPNVELTKISPLGTMTHL HADGFDLNVDMAVTAMGRIANVADLGLANAGIKSDLRGIPVDDHLRTAVANIYAIGDVNL KPQPKLTPVAGFEGRYVAQQILGSQEPIHYPAIPTIVFGPTELAKVGVALEDALAAPEQY QVTHNETTHWYTYNRIQDPDAQVWTIVDKSTGKLAGAVVLASLAEDLINTFAAAIDAGQE PSDLNRIYAYPSAQSDLQYLF >gi|225002553|gb|ACIZ01000026.1| GENE 4 5000 - 6226 630 408 aa, chain + ## HITS:1 COG:PAB0724 KEGG:ns NR:ns ## COG: PAB0724 COG0477 # Protein_GI_number: 14521293 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pyrococcus abyssi # 28 369 29 367 418 66 24.0 9e-11 MKRIKQIIFSDFFDTLTNGALVLFAYWYIYDVTHNQNYISLLGLISMLATLFTFIGGYFS DRMNRIALLKIVVLIRILNTSFGLVIYLLMNNPILGVMMTVVINSVLNIVYSPLTESIVP SIVHDRDDLVTANSWVSITNQLASVLSAGLSAIFIFFGNVGAGLVLSLILYSVSYFLIGR LNSTQAPEANHEASSSLSIQTSNFFEGIKIIRSNTLIAVIVPIALVTNFCFWTVWLLMPK LSIDIFSEFKYMYNAVDLAFTVGSILGAFLVNAKHSDTKIFTAKSFPYFLFLQGFMILLI GFFSLLQRGIFGVVLAWLGYGICNATGSILYFSTVQLSVPNQHIGMVIGAILTIFSVANP IAAIASAPLSHLAATPSIVLCLGLVMMIAAIPVFSKKVISDLIKVDAD >gi|225002553|gb|ACIZ01000026.1| GENE 5 6383 - 6463 104 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKIVLIICIVIAIVAGYLANKKRQKQ >gi|225002553|gb|ACIZ01000026.1| GENE 6 6763 - 7779 1208 338 aa, chain + ## HITS:1 COG:SPy2207 KEGG:ns NR:ns ## COG: SPy2207 COG0180 # Protein_GI_number: 15675940 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 337 1 340 340 462 66.0 1e-130 MAKKVILTGDRPTGRLHIGHYIGSLKNRVELQNSGEYEPFVMIADTQALTDNANDPEKIR HSLLEVALDYLAVGIDPDKTTILVQSQIPALFELTAYYLDLVTVNRLERNPTVKAEIKQK AFGDSVPAGFFIYPVSQAADITAFKATTVPVGDDQEPMLEQTREIVRTFNRTYHKDVLVE PEGYFPPKGLGRLPGIDGNAKMSKSLNNGIYLADDADTVQKKIMSMYTDPNHIHVSDPGK VEGNVVFTYLDIFDPDKDQVAKLKEQYQHGGLGDVKIKRYLIDVMEAVLEPIRTRRAHYA EDMGAVAEMLQQGSAKANVVANQTLQEVRDAIGFNYFK >gi|225002553|gb|ACIZ01000026.1| GENE 7 7932 - 8540 589 202 aa, chain + ## HITS:1 COG:TM0961 KEGG:ns NR:ns ## COG: TM0961 COG1704 # Protein_GI_number: 15643721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 28 193 29 193 193 134 42.0 8e-32 MKTKRLSPVAVTSIVLGVIVAICLIFGIGTYNSLAKQNQAVEAQWSQVENVMQRRADLVP NLVNAVKGQMGQEQKVFGDIAEARKSYANADSTTSKAKADDQLNKSVGTLINVIKENYPN LQSSNQVNTLMTQLEGSENRISVERKRYIDQVRDYNQSVVTFPKNIFASMMGLGKKDTFK ATPSAQTVPSVDFSSNSSSSGK >gi|225002553|gb|ACIZ01000026.1| GENE 8 8549 - 9406 789 285 aa, chain + ## HITS:1 COG:PM0783 KEGG:ns NR:ns ## COG: PM0783 COG1512 # Protein_GI_number: 15602648 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Pasteurella multocida # 7 144 4 136 254 77 37.0 3e-14 MRRHLAWLLAALTGLLLFTGAAHPVAAAEDLPARPTDHYYLDQDRYLDQETEQLVDQKNR YYQSTKQQPQIAVAALKSTHGDPLSDYAPDLFQKWGIGKKGTDNGVLILYADNNGKQNLR IEVGYGLEGDLPDALAGQILNTNLKGIKSGNKAELNQALRKVFNAVATVIDKKYKFPKDQ NTVSDETMNRYQNADRNRGGSLLGKIVVIFLVVVVVAVIFGGRGGGGRGGRRRDGDGGFW LWLILDALFSAGRRGGGGGFGGFGGGSGGGSSWGGGSSGGGGADV >gi|225002553|gb|ACIZ01000026.1| GENE 9 9949 - 11304 1309 451 aa, chain + ## HITS:1 COG:L170983 KEGG:ns NR:ns ## COG: L170983 COG0534 # Protein_GI_number: 15672149 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Lactococcus lactis # 1 444 1 444 446 350 47.0 4e-96 MRNLTIGKPLKLIILFTIPLLIGNLFQQLYSFMDALIVGRTIGKAALAAVGATSSIVFLI IGFAQGTTAGLSILTAQAYGARDYRRVRRSFGTSVWITLGISVILTIGAVTMTRPLLTVM QTPPDIMDDSIAFVRVIYFGIIASMSFNLLSNMLRALGDSRTPLFFLIIATIINIVLDFW FILGFHSGVAGAGYATVSAQVIAALLCWIYIRMRIPLLVINRSDLRFDWQDIVKHLKVGL PMGFQMSIIAIGAVILQVMLNTLGTNAVAAYTAAGRIDQLATLPSASFGVAMATFAAQNL GAKAYGRIRRGVYQTLLVNVGLSLVLGALIIVFSKPLVNLFLGPNQPAVTALAQTYFHYN ASMYWLLAILFTVRNLLQGLGQTLVPTVAGFFELGMRAFAAIFLVVPFGFAGASAANPLA WLGSVLVLVSSYIRTMRRIRQQEDTKTGEKA >gi|225002553|gb|ACIZ01000026.1| GENE 10 11438 - 11932 464 164 aa, chain - ## HITS:1 COG:alr4468 KEGG:ns NR:ns ## COG: alr4468 COG1247 # Protein_GI_number: 17231960 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase and related acyltransferases # Organism: Nostoc sp. PCC 7120 # 1 159 1 160 163 121 38.0 5e-28 MIEFVPATTADLPKIVAIYNETIPTHQATADLQPQTVDQKADWFAAHNDHFPAWMIQVDH HNVGWLTLSAYSDRAAYDQTAEISLYLDITARGHHIGSSALAFVDQEAPARGLTTIIARI FGHNSASRRLFKKFNYDHWGHLPAIADLPEGKADLEIYGKHFNS >gi|225002553|gb|ACIZ01000026.1| GENE 11 11951 - 12775 623 274 aa, chain - ## HITS:1 COG:lin0536 KEGG:ns NR:ns ## COG: lin0536 COG0500 # Protein_GI_number: 16799611 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Listeria innocua # 5 246 3 241 276 158 35.0 1e-38 MKNRLDDITDLMALGPTPDARDIQRRQTAHRIAIADAWQIQPGENILEIGCGQGDLSAVL ADQVGPSGHVTGIDIASRDYGAPLTLGQAWDHLLNGPLASRLTVHFDTNLAASLGPVANQ HFDRIVMAHSLWYFASANAFALLLKNLRTIGDYVDLAEWSLHPTALNQIGHLQAAIIQGL LYAIAPSDVANIRTLITPDTLAQIAHDNTWSYTAGKLIECPDLDDAKWEIATTKALLTEL KLSTDLRDRVKPQLEAMQHNGTASLPTFTGRITF >gi|225002553|gb|ACIZ01000026.1| GENE 12 12870 - 13802 729 310 aa, chain - ## HITS:1 COG:lin0643 KEGG:ns NR:ns ## COG: lin0643 COG4989 # Protein_GI_number: 16799718 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Listeria innocua # 1 310 1 305 305 358 54.0 1e-98 MKMINLGRSGLNASAIALGVMRLPNLDRPRATELLDAAYDVGINFFDNADIYSNGKAEQL FSDALKKASFTRDQVLIQTKVGIINDRKSMHRYDFSKTHLVTAVDQSLKRLGTDYVDSLL LHRPDPLMEPEEVAEAFLQLQNEGKVRQFGVSNFNPAQIDLLQQAVPQRLIINQLQFSLM HTGMIDAGMHTNMADTRSIDHDGGLLPYSQQHHMTIQAWSPFQYGFFEGVFINNDQFPKL NALLQKLADQYTTNPNAIAAAWLLRVPANVQVIAGTTKPARLRAIAEAADITLSRQEWYD LYFAAGNDLP >gi|225002553|gb|ACIZ01000026.1| GENE 13 14190 - 15692 1264 500 aa, chain + ## HITS:1 COG:sll1546 KEGG:ns NR:ns ## COG: sll1546 COG0248 # Protein_GI_number: 16332241 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Synechocystis # 2 488 19 523 540 115 22.0 2e-25 MIGAQSILFSITNLRTLKAIERGKYPVAIGDDFYAEHEILPETVDTIVQAFDAIDQIFKD YGVATVNVYASTSWAEADNAEFVRDQLYTRTGWLIKTTSLSEEAFFRTQAIMVKFPQFET ITQKGTVLIDISSGSVELTTFSQGTFGFSRNLSLGPLRVYEIMSDVQRSVTNYVEVMRDY IDSRLLDFMRLLPQGVEYTNVILMGSSLSIFQNLIPEGKRQVETDRPGFDLLYDEVTKAS DQYLADTYDLTSNQTSLVLPTVLLVYRLIETLNSQSIWISDLKAIDGLEVHAAHAGGFKK LGFDPDEEIVISANNLAKRYRVDCDHMQTTRTFALQLFDRLKKLHGMGKHERLLLEVAAT VSDIGSYIETHKHYAHSNYIIKASEIMGLNALDVTMVATITRFHSSVTPQSDLKNFPIMS TENRLVVAKLSAILRVADSLDASRQQKIQRMRVSLKPDKVVLSTKANDDIELERWTLARK GEFFSEVFGVGLELKGRNTL >gi|225002553|gb|ACIZ01000026.1| GENE 14 15689 - 17851 1736 720 aa, chain + ## HITS:1 COG:BH1392 KEGG:ns NR:ns ## COG: BH1392 COG0855 # Protein_GI_number: 15613955 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Bacillus halodurans # 4 654 12 666 705 655 51.0 0 MKKLDFSKPRYFNNRELSWLAFNDRVLEEARDKNNPLLERVRFLGITQSNLDEFFNIRVA SLKKMVTVNYDKPDAAGMKPQEQLDAISKTAHEMVEKQYNTLVRSLIPKLNAVDIQLLHA KDLTQKQQDFVSDYFHYELYPVLTPMGVDPTRPFPFLSNNSLNLAIRLVRPDDDDDKSRS FAMVQVPDVFPRVLRLPGGDNVFILLEEVIRMFVGELFVGADIKETATFRVTRDMDMDVA EEDASDLMKEIQSQLKKRQRGKVMRLEIEAGMGKHLRKRLTKAMNVKEEDVYEIHGPIDL NFLSKLVKQVHGHKELLFKPFTPYIDPAFKDTSIFDVIKERDVFMQHPYDSFEPVVDFIR EAAQDPQVLAVKMTLYRVSSKSPIIRYLKKAAENGKQVTVLVELKARFDEENNVHWAQEL EHAGCHVIYGLVGLKTHCKLALVVRREEDGIKRYMHMATGNYNDVTARLYTDMGLFTCNN EIGEDASNIFNMLSGFSEPPYFHKLVIAPLGIRDYLMDRVDEEIAAAKAGRKALIQMKMN SLSDTAMIEKLYEASHAGVEIHLLIRGICNLKVGIPGVSDNITVHSIVGQLLEHSRIYYF YADGQENVYLSSADLMNRNLSRRVELLFPILQDDIRERIIKIFDIMWHDNVKTRILQPDS TWTRAQLRGVTKLNAQAYFIEHAVAMGEALRREEIDQAPEDLHATHTFIPMTAPKEDDDA >gi|225002553|gb|ACIZ01000026.1| GENE 15 17848 - 18789 916 313 aa, chain + ## HITS:1 COG:CAC0621 KEGG:ns NR:ns ## COG: CAC0621 COG0248 # Protein_GI_number: 15893909 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Clostridium acetobutylicum # 4 303 3 302 499 195 37.0 8e-50 MTHHFAVIDLGSNSARMTIWSIEQEVVKPVKRLKEMVRLSEDMGSSRILQPAAMARTLKA LQGFKAELDKYDDIDLKAVATAAVREAKNQKDFLKRVKNEAGLTISVIPGTREAEYDFLG VINTLPIQNALIMDTGGASTELILVQNRKLQHLVSIPFGSVNLSERFLNPDVISAAEYFA LSTFIQQTFNSVWWLRRAQNLPIIALGGSNRTLAKIERRKEKLADFEAIHGYRMPTQQAN NIFKEILSSDLAAREAIPGLSKYRADIIVGGLMPVISMIRYLDSDRLTFSQFGLREGALY DHLNTRAVNQREH >gi|225002553|gb|ACIZ01000026.1| GENE 16 18882 - 19865 1063 327 aa, chain + ## HITS:1 COG:SP1027 KEGG:ns NR:ns ## COG: SP1027 COG4086 # Protein_GI_number: 15900898 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Streptococcus pneumoniae TIGR4 # 5 316 12 319 324 130 32.0 3e-30 MKKLIKWLGLAAAGLALITAVPQIVRADDAWTQPVATLGSSLTTDQKNGTLSTLQNAAGV SNATQLTVNGATLVKYLNPSGSSFTESSGVWSSALVQKTNNGGINVTIVPYNGTNNITTI TADQYRNAALTAGVSNANLYITSAVKIDGSGALAGVYAAFAQNGENLNNQQINAAQQEVN TLSSITQANKGKDGYTDKQLNNAVAGAKQQMASQSNNGQQTLSQNQIGNIVDSQLKQNNL TTIINNNQRQLIINLLVNVQKAGSLKNTDFKAQAGKLADSIQNSAKGLFDKLNSSLNTQE NRNFLQKIWDGIVSFFSGIVQWVRSMF >gi|225002553|gb|ACIZ01000026.1| GENE 17 19918 - 20193 404 91 aa, chain + ## HITS:1 COG:no KEGG:LC705_02605 NR:ns ## KEGG: LC705_02605 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 91 1 91 91 110 100.0 2e-23 MLPSMLASTQSENGHTLTGAITIGAIVAVIIILFLVVKLLGAILRHPFISLALFALGGFA IFKFALVGIIGIGLLAAVGAGALWMNTGDGS >gi|225002553|gb|ACIZ01000026.1| GENE 18 20295 - 20804 661 169 aa, chain - ## HITS:1 COG:BS_yxkA KEGG:ns NR:ns ## COG: BS_yxkA COG1881 # Protein_GI_number: 16080938 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Bacillus subtilis # 9 169 8 168 168 158 49.0 6e-39 MKLSVPLVNGQLDDRYGKHATGADVKNGYPITSFPFTIEDAPAGTVSFALWFLDYDAVPV GGLPWIHWNAANIPASVTKIPAGASHHNLVPMIEGKNATAGHLVGNTDPFTREGYVGPQP PDKDHDYTLIVFALDTKLPLQPGFWLNEARHAMKGHILAQAEVDLPSRV >gi|225002553|gb|ACIZ01000026.1| GENE 19 20936 - 21862 902 308 aa, chain + ## HITS:1 COG:no KEGG:LC705_02603 NR:ns ## KEGG: LC705_02603 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 308 1 308 308 531 100.0 1e-149 MQENVQVLLDEVKQHYDHPLEVVIQGEASGVLTHDQSHQRLKKDGTLEVVVTDTTNADYT LSHELLHLLYQMKGYSQLQFHLLSGDPQVDDQLYATSTALYNAAMHMLVVAWQREHGLIT DAVVAQVLAGFKQNVPAEADDQLVIYRILSLLDLLGFLDGKLPADLAAAYPQALPYAQEL FQLINEQKLDSPFGLRRAIVHLFSRFDALIEQLGYQPTNDQEFATLSPVLSKRQLRLTLD QVYLIKHSGYRDRDTKQPAYVAMGRSDDQNAFVLPLSENATTPEAFQQLYQQPLNDVLAQ YQLDYTIR >gi|225002553|gb|ACIZ01000026.1| GENE 20 21859 - 22005 64 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSFRWSHFFSYLIMAIVLVFFAIVLYQVVMLGIQSVTNGFFINFGHH >gi|225002553|gb|ACIZ01000026.1| GENE 21 22224 - 22916 730 230 aa, chain + ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 1 228 1 229 229 236 50.0 4e-62 MFDLQTAVTQAKYVTFMTGAGVSTASGIPDYRSKGGLYADKVDPEYALSIDNLQAHHEDF HEFVVNNMYYPDAKPNVIHEKMAAISNQKGAIVTQNVDGLDRQAGAKHVVEFHGNLYRIY CQQCHQHFDYQTYLKSDVHAADGGILRPDIVLYGEPINPDTVSAAINAIASADLLIVVGT SFVVYPFAGLIGYAQPDATIVAVNREQIALPQGGHMVLGDATDIFADLHV >gi|225002553|gb|ACIZ01000026.1| GENE 22 22951 - 23547 443 198 aa, chain + ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 190 1 185 188 125 41.0 4e-29 MNKGRLEAFTDAVIAIILTILVLELNPPHSGSLASLWELRGVFGIYLVSFLTLMVYWNNH HHLFQLVKRIDWRVMWANSLFMLAISMFPFATSWVGEGHVEAFGPELIYGFVVLMANISY LLLVETLRRVNGPHSELAALYNRQHNWKAIGSIIIAFVAMILALLWPPLTIILDLVMLLL WAIPDQRVERHLLHGPKN >gi|225002553|gb|ACIZ01000026.1| GENE 23 23572 - 24477 909 301 aa, chain + ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 1 294 1 296 302 253 44.0 4e-67 MARTIGIIGIGHVGVTTAFNLVSKGIADRLVLIDQKADLAEGESYDLKDALGGLPTYTEI IVNDYDALKDADVVISAVGNIGAISNGDRIGETQTSKQALDDVAPKLKASGFHGVLLDIT NPCDAVTSYWQYLLDLPKSQIIGTGTSLDTYRMRRAVAESLNVNVADVRGYNMGEHGESQ FTAWSTVRVNNEPITDYAQVDYDQLADAARAGGWKIYQAKHYTSYGIATIATEMTQAIIS DAKRIFPCANYDPEFGIAIGHPATIGKLGVVNTPKLKLTDEERAKYVHSAGIIKATVEKM K >gi|225002553|gb|ACIZ01000026.1| GENE 24 24635 - 25114 411 159 aa, chain + ## HITS:1 COG:lin1215 KEGG:ns NR:ns ## COG: lin1215 COG0494 # Protein_GI_number: 16800284 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Listeria innocua # 4 129 3 131 158 79 35.0 2e-15 MVKKYTLVTVETPSGWLLINRTNPPYRGMWNTLGGKFLPDETPAVCAARELQEESHIIIP AHELTGVGRVFWHVDGQLRGELYAFFGKTDEPFLGPQATREGILATFSKTWLLADNPGLV PDLQPLLKYALNGEKHDYASYFNGDTLQAFRIADGEFHD >gi|225002553|gb|ACIZ01000026.1| GENE 25 25107 - 25919 543 270 aa, chain + ## HITS:1 COG:lin2505 KEGG:ns NR:ns ## COG: lin2505 COG1801 # Protein_GI_number: 16801567 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 270 2 279 281 247 48.0 2e-65 MIRVGLTSVADHPSLAANGKRSTFADYAQYFPVIELDTTFYGLKTADLVRRWQAQVPAGF QFIVKASKLMTKHAATQDLVAEFSRFNDMVAPLTATHQLQAVLCQFPPYFGVTAENVRYL QNMNQWLPDLPVAIEFRHPSWYLPAYRAATIDLLKAAGDIHVVVDEAQTVSGSVPLVPIA TNPELTILRLHGRNQAWGQSGAKTTERTNYRYSQAELEAFALIVKHLKSKNVTVIFNNNG GHDAAANAQQLIDMLGLDFPGLAPRQLDLF >gi|225002553|gb|ACIZ01000026.1| GENE 26 26225 - 27106 714 293 aa, chain + ## HITS:1 COG:mll0601 KEGG:ns NR:ns ## COG: mll0601 COG0596 # Protein_GI_number: 13470803 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mesorhizobium loti # 3 293 5 300 301 172 36.0 6e-43 MVVKIKEGYMPFHEYKTYYRIVGEPSADKAPLLIHGGPGSSHNYFELMDDYAETGRQLIM YDQVGCGKSSLPEDPGVYVKETWAEELVALRKFLHLDELHMLGQSWGGMLEMYYLTSFDP QGIKSVMIDGSPASIKLWVQEQHRLIKYLSYEDRAAIAEAERTGDFTNVKYLAANDRYME KYCWDDPDENSPEPLRRPTNGKRASLIAEGPNEFTENGTISDFDVTDQLHKIHVPVLVTS GTDDLCTPLIAKSVVDHIPGAKWHLFANSRHLALLDQHDEFIHVLDQWLAAND Prediction of potential genes in microbial genomes Time: Wed May 25 19:36:04 2011 Seq name: gi|225002552|gb|ACIZ01000027.1| Lactobacillus rhamnosus LMS2-1 contig00030, whole genome shotgun sequence Length of sequence - 13699 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 6, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 33 - 92 5.0 1 1 Tu 1 . + CDS 122 - 2104 2031 ## COG0143 Methionyl-tRNA synthetase + Term 2110 - 2167 13.6 - Term 2106 - 2151 10.6 2 2 Op 1 . - CDS 2163 - 2609 328 ## LC705_02591 hypothetical protein 3 2 Op 2 . - CDS 2660 - 2872 211 ## COG1476 Predicted transcriptional regulators - Prom 2906 - 2965 8.5 - Term 2962 - 3012 10.6 4 3 Op 1 35/0.000 - CDS 3036 - 4949 228 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 5 3 Op 2 . - CDS 4936 - 6762 1380 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 6 3 Op 3 9/0.000 - CDS 6816 - 7727 696 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 7 3 Op 4 . - CDS 7714 - 8418 600 ## COG3279 Response regulator of the LytR/AlgR family - Prom 8444 - 8503 2.4 8 4 Tu 1 . - CDS 8554 - 9435 758 ## COG2017 Galactose mutarotase and related enzymes - Prom 9469 - 9528 4.4 - Term 9666 - 9697 0.0 9 5 Tu 1 . - CDS 9727 - 10725 1099 ## COG3684 Tagatose-1,6-bisphosphate aldolase - Prom 10764 - 10823 3.9 + Prom 10849 - 10908 2.6 10 6 Op 1 . + CDS 10940 - 11431 402 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 11 6 Op 2 3/0.000 + CDS 11438 - 12217 744 ## COG0084 Mg-dependent DNase 12 6 Op 3 7/0.000 + CDS 12214 - 12783 537 ## COG1658 Small primase-like proteins (Toprim domain) 13 6 Op 4 . + CDS 12776 - 13660 864 ## COG0030 Dimethyladenosine transferase (rRNA methylation) Predicted protein(s) >gi|225002552|gb|ACIZ01000027.1| GENE 1 122 - 2104 2031 660 aa, chain + ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 4 545 5 547 549 749 64.0 0 MASKPTFYVTTPIYYPSGKLHIGNAYTTIAADVLARYKRLMGYDVFFLTGTDEHGLKIEQ KADKLGVTPQAYVDGMAAQIKQLWKMLEITNDKFIRTTDKEHVEAVQEIVERLIKQGDVY LGEYTGWYSVEDEEYFTESQLSEVYRDKDGKVIGGKAPSGHEVQLVHEPSYFFKMSKYTD RLLKYYDEHPDFVQPASRKTEMINNFIKPGLEDLAMSRTSFNWGVQIPSDPKHVVYVWVD ALLNYITALGYGSNDHALFDKYWPANVQLIGKEIVRFHIIYWPIILMALDLPLPKKIYAH GWLVMKDGKMSKSKGNAIYPDMIVERYGLDALRYYLMRAIPFGNDGIFTPEDFIDRINYD LANDLGNLLNRTIAMINKYEGGILPAFKPDVTPFDQDLGDVAQAALAQYHKLMDELRFSD ALDQVWKIVSRANKYIDETEPWKLAKDPAKKDQLDSVMAHLAESLRLIALLIQPVMTHAP VQIFGQLGLDHENEDHKVVKWGALPAGAKVVEQGTPIFPRLDAEEEVAYIKSKMTPGTAK AAVDEKTRKPEIDFKQFDKSEIRVAEILNVEPVKGADKLLKFTLDAGDEGTRQILSGIRE FYPDYQKLKGKKVMAVVNLKPRKLKGEMSEGMLLSAESLDGKKITLLEVSENLENGSLVG >gi|225002552|gb|ACIZ01000027.1| GENE 2 2163 - 2609 328 148 aa, chain - ## HITS:1 COG:no KEGG:LC705_02591 NR:ns ## KEGG: LC705_02591 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 148 1 148 148 230 100.0 1e-59 MKRILHVMPLTSWLAWFGAFGFAMLYRYSKAIVPESIEKVLLVTVAVLVSYAIFATQQRT ETQRIQKLQHGSLSDKRLANEMNDERNQMIIGKAAVLSIKWIVLLNIAALFVMAALDVSS VAIVLLALSTIMIPILNIILQVHLNRTM >gi|225002552|gb|ACIZ01000027.1| GENE 3 2660 - 2872 211 70 aa, chain - ## HITS:1 COG:DR2454 KEGG:ns NR:ns ## COG: DR2454 COG1476 # Protein_GI_number: 15807441 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Deinococcus radiodurans # 1 63 1 63 64 79 63.0 1e-15 MENRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIF IDESADSKLL >gi|225002552|gb|ACIZ01000027.1| GENE 4 3036 - 4949 228 637 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 390 602 17 230 245 92 29 2e-18 MATSNHSEPKPSKQTANRALRVVRIIHQLDKLAIPIEFLRALTTVGIPYLNIAFLGVVLN QLQQHATFRQVILLIGGFLLARYLLQLASNWFAKLAEDHETGVNRRLDRATTEKLLTVSY TTLQDPNMRNQYAGAVEGKAFSGGITSLMKDGLQDFFSLVIAIGFAVATLINLTQATNHA ATWFNDARYPLLIIALLLFPIIVGSWSVHHSNQIQQQLIRKILPSNRQFTYFSNFTQNMD NHQVIRLYQASALVMKNERDSNHRFMNQLQSGYWKIAKFGHWPNVAIALSVIGLYILVGA KALMGVLAIGSVMIAVGYFQQLMTVAYQFLQQVAMYVNMIDYLQFYVDFLNLPDHDQSGT LPVEKRNDNEFAIQFHDVSFKYPGSDQWALRHVNLTLNIGERLALVGRNGSGKTTLIKLL VRLFKPTEGIITLNDIDIQKYDENEYRSLLGVVFQDFRLFAYSIAENVAATAHPDRERVW KALKVADVADRVKRMPKTIDTPITTALSDDGVTVSGGEAQKIAIARAWYKDAPIMILDEP TAALDPISEYEIYQRFDELIEGKTAIYVSHRMSSTRFSQRIVVLDHGKIVQDGTHNSLMA EPGIYRDLFNAQAQYYTEDRIKAARKKVATTTTAVAD >gi|225002552|gb|ACIZ01000027.1| GENE 5 4936 - 6762 1380 608 aa, chain - ## HITS:1 COG:DR2404 KEGG:ns NR:ns ## COG: DR2404 COG1132 # Protein_GI_number: 15807394 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Deinococcus radiodurans # 203 595 238 626 633 182 32.0 2e-45 MKKYSLWNNLRWYFANLRKSKPALAWTASGLALDKAAAALLGVFTPALLVGAITNHATLG EFARLAVLTGLGLALTSEIAYLIMTHDGVASSAVRSDIGMDFHQKQWDLDYDQISSGTLQ ELAHTAFKKGLSYTLAGAEAIYIYGRGTLVDLTTLIVFLATLSFAVPWVFALVLISAAIS YAGMSWYRQWYQQNNVRWNKLGRQQDYITRNAYALENGKDIRMFGMADWYHHHLDRLLTL QDTWQRRNSLRRFLGEQAGQLAGLVRDAIVYGTLIAAILRGRLSIAQFTLMFGMTNSFIT LLDQLLTDFNGLQNASIDLQEVREFMALQPQTPARTLTKAEQAQLAKRPVTITFSHVTYR YPEAKSASLNDVSFTLTAGQKLAIVGINGAGKSTLARLMMGLLHPTEGTITINGLDAKLI PLAARFALFAPVFQETIVLAQSLADNVAMTNHSDATRVMSALKAANLDALVATLPQKAAT PMTRYTSDDGVELSGGQAQKLMLARALYKDAPVLILDEPPAALDAIAENEIYQDYAQLAA GKTSLFISHRLASTRFCDRILFMDHGQVLESGTHEQLMAKAGHYAHMYQIQSKYYQPAAK EVTANGNF >gi|225002552|gb|ACIZ01000027.1| GENE 6 6816 - 7727 696 303 aa, chain - ## HITS:1 COG:CAC1582 KEGG:ns NR:ns ## COG: CAC1582 COG2972 # Protein_GI_number: 15894860 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Clostridium acetobutylicum # 61 294 216 452 452 95 28.0 1e-19 MTAISWFWLVAFGLLVVGCMSQLWWIFRRQQNWPVRWLNLIIVIVSLSSWWLWPLPVVRG LLFTITVLAGSLEFILIRQFLNDQDAVFARSLDKMMAQYSEEVQELYANMRGWRHDYHDH LQALKAYLDNQDTAAARQYLNELEDKLDAVDPLVHSGNAMLDAIVNAKLTLAERLHIPVN EKVIVGNTPLIKDVDLVVILGNLLDNAIEAISEQPPHEKRQLRLYIGIVKQQFYISVTNT RPADQVIDYQYASTKSDKRGLGIRRVNKLVAKYDGMINRQYEASVFVTEIAIPIHAAKPT THA >gi|225002552|gb|ACIZ01000027.1| GENE 7 7714 - 8418 600 234 aa, chain - ## HITS:1 COG:CAC1581 KEGG:ns NR:ns ## COG: CAC1581 COG3279 # Protein_GI_number: 15894859 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Clostridium acetobutylicum # 1 228 2 232 234 98 27.0 1e-20 MHIAVIDDQAATREATVKLIRQLAQPSQPLQVAAYSNAEQFLFAEKPADLLLLDIKLGSG MDGMALAKKIRQHDPETAIAFVSNYDEFVFDGYDVNAIDYILKPLTVAKLKHLIEKVAGQ TQPKLLALQTAAGLVRVPMYDISAIEVTDHRLQVHTQKNHYLVNGQLKDFLPRLDDNFIQ IYRSIVINLNFLSQLDKRTVVMADGTTYPVSRQQAPLVKQAFFKHFRGLTHDSN >gi|225002552|gb|ACIZ01000027.1| GENE 8 8554 - 9435 758 293 aa, chain - ## HITS:1 COG:L74167 KEGG:ns NR:ns ## COG: L74167 COG2017 # Protein_GI_number: 15673611 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Lactococcus lactis # 1 284 5 282 297 213 37.0 3e-55 MITIENQQFKASIAERGAELQSLVNKTDNYDYIWNGDKTFWNRHAPILFPAIGKSNEDQY RLGAKTFPMGQHGFARDYDFEVSDHSDSAATFTQHQNSETLKKFPFKYTLAVTYMLTEDG LSIHYTVTNDDSNSMPFALGFHPAFNVALKADGSFDDYDLTVEPLNSPLQRFGIGPVPFR NGDVEDIAGAEGNKLPLTHDLLDGGLVILANSEISKATLSSPHHKHSLTLDINDFPYLTI WSPEHKKAPFIAVEPFDGLPDQAGEPSDWYTKLGNTTLSAGANKQLALKVELH >gi|225002552|gb|ACIZ01000027.1| GENE 9 9727 - 10725 1099 332 aa, chain - ## HITS:1 COG:lin0543 KEGG:ns NR:ns ## COG: lin0543 COG3684 # Protein_GI_number: 16799618 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Listeria innocua # 3 329 2 325 338 345 55.0 5e-95 MSVKLTAGQLEHLKQLSNDNNVISALAIDQRGSLKKMLAAAANKPADETTIVDFKKAVSE ELTKYASAILLDPEYGLPAAKVRDPKSGLLLSYEKTGYDATEPGRFPDLIDNQSALRIKN EGGDAVKFLLYIDPDEPDSINDRKYAFVERVGAEAKANDLPLFLELVSYDGKTNETGTAA WAKAKPEKVIKITKEFSKPQYNVSVLKLEVPVDQKFVEGYTDEGVTPVYSKEEAAKYYKA QSDATDLPFIFLSAGVSNELFLEELKFAKEAGSTFNGVLCGRATWKPGVKPFAAEGEAAG KKWLQTEGKANIDRLNKVLADTATPWTDKVEG >gi|225002552|gb|ACIZ01000027.1| GENE 10 10940 - 11431 402 163 aa, chain + ## HITS:1 COG:SP0645 KEGG:ns NR:ns ## COG: SP0645 COG1762 # Protein_GI_number: 15900548 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Streptococcus pneumoniae TIGR4 # 9 130 18 139 165 70 32.0 2e-12 MAEFSTTPLVYFLETPTQESFFDEISRKLVARNVMQTEGKAALIAREQTFPSGMQLNQIA SGLPNIAIPHLEGSLVQTGCLVVVHFEIPVAFKDLADVSRILPVSWAFMLFNPELKQQPL RMAQLIRTLTQSPVAKLQRLFAARKPTQVEQLLPQLLAATEKE >gi|225002552|gb|ACIZ01000027.1| GENE 11 11438 - 12217 744 259 aa, chain + ## HITS:1 COG:L87336 KEGG:ns NR:ns ## COG: L87336 COG0084 # Protein_GI_number: 15672669 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Lactococcus lactis # 1 257 1 257 257 270 48.0 1e-72 MDIFDSHTHLNDTPYHGKEASYIEAARQLGVKKMAIVGSDTTLNAGALQLAHQYANLYAI VGWHPESSKDYDAAKEAVLLEQLADPKVVALGEIGLDYHWNTSPREIQRRVFRRQLELAR SLHIPVSIHSRDAFEDTYTLLKTAHVEEFGAIMHSFTGEADWARRFLDLGMYISYSGIVS FKNAPEEHASAKIIPSDRLLVETDAPYLTPTPYRGRQNQPGYTRYVVEALAKLRETTPET IAKQTWDNAHRIFKLKEDA >gi|225002552|gb|ACIZ01000027.1| GENE 12 12214 - 12783 537 189 aa, chain + ## HITS:1 COG:BS_yabF KEGG:ns NR:ns ## COG: BS_yabF COG1658 # Protein_GI_number: 16077109 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Bacillus subtilis # 4 178 3 176 186 187 58.0 9e-48 MTTIKQIVVVEGRDDTKRLKETFGRIDTIETRGSAIDEATLARIRQAQAKRGVIVLTDPD FPGEKIRKTISRAVPGVTHAFLPRAEGVPDHKGSLGVEHASPAALRAALQHLFTEVPDAP QVISQQDLLAAHLIGGTGARERREQLGEQLHIGYTNGKQLLRRLTEFQISRADFLAAVAQ LNEGANNHA >gi|225002552|gb|ACIZ01000027.1| GENE 13 12776 - 13660 864 294 aa, chain + ## HITS:1 COG:SPy0262 KEGG:ns NR:ns ## COG: SPy0262 COG0030 # Protein_GI_number: 15674442 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Streptococcus pyogenes M1 GAS # 4 290 2 290 290 301 53.0 1e-81 MHEKVAQPAVTNAILKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIG ALTQFLADQAHQVVALEIDDRLLPILAETLADYPNTTVVNEDVLKTNLTELVATHFDGNH TLKVVANLPYYITTPILLHLLRAHLPLHSMTVMMQKEVAARLSATPGSKDYGSLSIAVQL VADVATAFTVSRHAFVPAPNVDSAIVTLTQRPEPLAAVKNPDSFDRLVRGAFASRRKTLW NNLVALFGKPNKAAIRTALSVAEIAPETRAEQLAITDFARLDEALRGEGLGIAG Prediction of potential genes in microbial genomes Time: Wed May 25 19:36:12 2011 Seq name: gi|225002551|gb|ACIZ01000028.1| Lactobacillus rhamnosus LMS2-1 contig00031, whole genome shotgun sequence Length of sequence - 14761 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 8, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 128 - 187 8.9 1 1 Op 1 2/0.000 + CDS 230 - 481 284 ## COG4466 Uncharacterized protein conserved in bacteria + Term 517 - 567 12.5 + Prom 585 - 644 4.5 2 1 Op 2 . + CDS 731 - 1609 436 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 3 1 Op 3 . + CDS 1665 - 2543 736 ## COG1230 Co/Zn/Cd efflux system component + Term 2573 - 2623 12.2 - Term 2555 - 2616 16.0 4 2 Op 1 4/0.000 - CDS 2636 - 3397 861 ## COG0390 ABC-type uncharacterized transport system, permease component 5 2 Op 2 . - CDS 3394 - 4044 197 ## PROTEIN SUPPORTED gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 - Prom 4066 - 4125 3.5 + Prom 4153 - 4212 4.7 6 3 Op 1 . + CDS 4266 - 5114 683 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 7 3 Op 2 . + CDS 5111 - 6316 893 ## COG4767 Glycopeptide antibiotics resistance protein + Term 6321 - 6371 7.0 + Prom 6566 - 6625 6.3 8 4 Op 1 11/0.000 + CDS 6650 - 8038 1437 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) + Prom 8041 - 8100 4.1 9 4 Op 2 . + CDS 8136 - 9110 955 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 9121 - 9156 4.5 10 5 Op 1 . + CDS 9207 - 9536 385 ## COG4043 Uncharacterized conserved protein 11 5 Op 2 . + CDS 9625 - 10059 142 ## LC705_02567 hypothetical protein 12 5 Op 3 . + CDS 9993 - 10124 61 ## + Term 10145 - 10194 8.5 - Term 10133 - 10182 12.3 13 6 Op 1 . - CDS 10211 - 10591 394 ## COG1970 Large-conductance mechanosensitive channel 14 6 Op 2 . - CDS 10654 - 11022 238 ## COG1434 Uncharacterized conserved protein 15 6 Op 3 . - CDS 10920 - 11711 464 ## COG1434 Uncharacterized conserved protein - Prom 11855 - 11914 3.1 + Prom 11704 - 11763 4.1 16 7 Tu 1 . + CDS 11783 - 12235 438 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Term 12167 - 12200 1.0 17 8 Op 1 1/0.000 - CDS 12247 - 13599 1175 ## COG1078 HD superfamily phosphohydrolases 18 8 Op 2 . - CDS 13589 - 14437 425 ## COG0095 Lipoate-protein ligase A - Prom 14465 - 14524 7.0 Predicted protein(s) >gi|225002551|gb|ACIZ01000028.1| GENE 1 230 - 481 284 83 aa, chain + ## HITS:1 COG:BS_veg KEGG:ns NR:ns ## COG: BS_veg COG4466 # Protein_GI_number: 16077112 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 83 1 83 86 92 54.0 1e-19 MPITLASIKRKLDGKIGENLTVVAQAGRKKVTRRRGTLKETYPAIFVVDLDQNENAFERV SYSYADLLTKSIKITFEGEEKAS >gi|225002551|gb|ACIZ01000028.1| GENE 2 731 - 1609 436 292 aa, chain + ## HITS:1 COG:lin0229 KEGG:ns NR:ns ## COG: lin0229 COG1947 # Protein_GI_number: 16799306 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Listeria innocua # 1 286 1 287 291 281 49.0 1e-75 MELIEKAPAKINLSLDALYRHADGEHEWQMVMTSVDLADYVSIKPSHSIQVSTDSGFLPE DPRNLAYKAALALQRHANIRQGARIHIEKHIPVAAGLGGGSSDAAAVLRGLNSLWQLGYS RSQLARIGLQVDSDVPYCVYSETALVTGRGDVVTPLGSLPNFWVVLAKPRVSVSTPSILN AIDYQAGLLHPNTPEVVAGVQNHDFNQMISGMGNSLEAITASRYPEMTALKQRLKKYGAE IAQMSGSGPTVFGLCQKHSRAMRVYNSMKGFCREVYLLRPFCLSTNSHRLRG >gi|225002551|gb|ACIZ01000028.1| GENE 3 1665 - 2543 736 292 aa, chain + ## HITS:1 COG:CC0303 KEGG:ns NR:ns ## COG: CC0303 COG1230 # Protein_GI_number: 16124558 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Caulobacter vibrioides # 8 280 75 347 361 256 52.0 5e-68 MEQVQPNKAFFWGILLNLIYIIAEVAFGIGIGSVALVADAIHNMSDVLGLGLAWFAEWLS NRHPTVQRTYGYKSSSILAALANAAFLLVAMGAIIVEAITRLSQNAPVEGGWMMVVAGAG ILVNGATAILFHSGSQHDLNIRGAFMHMAADAGVSLGVVLAGGLILLTGWEWLDPVMSIL VAIVVLIGTWDLLRDAVNLAMAAVPKEIDPVAVKTLVNAYPTVASCHDLHIWALSTTDVA LTVHVVRTTAEGNDAFLDALSLSLRESFDIAHTTIQVEYGPYLPDNKMENPY >gi|225002551|gb|ACIZ01000028.1| GENE 4 2636 - 3397 861 253 aa, chain - ## HITS:1 COG:ECs0554 KEGG:ns NR:ns ## COG: ECs0554 COG0390 # Protein_GI_number: 15829808 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 1 252 10 260 268 231 55.0 8e-61 MNSQLIVSPLALLLALALVVIALVINLKEDLGMTKDLIVGVLRAVIQLTVVGFVLTYIIK ADAVWLTLAMVAIIIFNAAWNAKKRAGTIPAAFVTSLLAVTTATGLTLLMLVSVKAIRFI PAQIVPISGMIASNVMVAIGLAYRSLNTEFKDLRPQVLERLALGANLKQASQTLIVNAIK TGMAPTIDSAKTVGLVSLPGMMSGLIFAGIDPTKAIMYQIMVTFMLLGATSLGSFIAVYR SYPRFYNDQKQLR >gi|225002551|gb|ACIZ01000028.1| GENE 5 3394 - 4044 197 216 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 [Haemophilus influenzae PittAA] # 17 194 15 193 205 80 35 6e-15 MNCFELHHMTFAPTQTAILNDINLDIPWGIDLTIAGHSGSGKSTLLRLLATLLTPTNGTI LYNGKAQADYDPIAYRREVSYCAQQPALFGATVADDLRFPFMIRNTEMPREQAEAALESV DLAKSMLDAPTQNLSGGERQRVALLRHLFFPPKVLLLDEVTTGLDPDTKTIIHELLNRQN EKGITLIRVTHDEGELQTAKNLMTLVAGQFEEVAKV >gi|225002551|gb|ACIZ01000028.1| GENE 6 4266 - 5114 683 282 aa, chain + ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 271 1 271 272 340 60.0 1e-93 MKVRRSDRLIDMTRYLLERPHTLIPLTFFSKRYESAKSSISEDLAIVRRTFAQRQTGILE TVPGAAGGVRYIPIMGEDEAENFIAAMAKRLSETDRLLPGGYVYLSDLLGTPSVLRQIGR LIATQYREANVDAVMTVATKGIPIAQSVSQYLNVPFVIVRRDSKITEGSTVSVNYVSGSS ARIEKMELSKRSLPANSRVLIVDDFMKGGGTVNGMKALIDEFNAKMVGITVFAEGKFDGD RMVNDYTSLIRVDKVDTKANTLHATAGNFLSQNRQLLEVSHQ >gi|225002551|gb|ACIZ01000028.1| GENE 7 5111 - 6316 893 401 aa, chain + ## HITS:1 COG:L188881 KEGG:ns NR:ns ## COG: L188881 COG4767 # Protein_GI_number: 15673730 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Lactococcus lactis # 1 227 1 223 354 200 51.0 3e-51 MSAYLGPVRTAVVTFPFLALLLALPFLVVVYRRYGAFSWWRAIVIYSFVFYLLSAYFLII LPLPAREAVAQFTGAKYNLTPLMALRYFIHTTVFVPSNPHTWLAALKQSSFIQPFFNIVL TIPFGFYLRYYFKRSVPQIIVMSFGLSLFFELTQLSGLYGFYPRPYRLFDVDDLILNTTG GLVGGVLAPILMRALPSRDTIDAKSQARGARVTFARRLAAFLVDFVLFSQVIGLMIKFLF HLLGLDQLPDFLSEDVLPLFFVFVIWPAFNNGQTLGKGLVRIKIVRTDGQAVGFWRLLLR EGLLYGLAFSSLVGLNNFFIAYFAKFQRTQINLAALGFFAVLVFLFMINFVWEVGSRHFR FFYDAWADTTQVSTFEVPAEVKQQVDDAKSDVDEKHDRLNE >gi|225002551|gb|ACIZ01000028.1| GENE 8 6650 - 8038 1437 462 aa, chain + ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 1 453 1 453 457 523 59.0 1e-148 MSKKFTIILAAGKGTRMKSKYYKVLQPVCGKSMVEHVVSQVEAIHPDAIVTIVGHGAEEV EKTLGKRTEFVLQAEQLGTGHAVLQAEPLLGQKEGSTLIMSGDTPLFTAKTLNDLFAYHE AKGANATILTANAPDPTGYGRIIRDTDGNVIKNVEQKDATPEEALISEINTGVYVFDNQA LFKALHQVKNNNAQGEYYLPDVLGILRAAGEKVAAYQMPDYTESLGVNDRVALAQATRLM QQRINEQHMRNGVTLIDPATTYIDTDVKIGADTVIEPGVYLKGKTMIGEDCHIGTHSELL DATLEDDVTVTSSTIEHAVMHAHSDIGPNSHLRPDADIGEYVHLGNFVEIKKAKIGARTK VGHLTYVGNATLGSDINVGCGVVFVNYDGVQKWNSTIGDHAFIGSNSNIVAPVEVADHSF IAAGSTITKDVPFHAMAIARARQTTKEDYWKRLPLANDPDWN >gi|225002551|gb|ACIZ01000028.1| GENE 9 8136 - 9110 955 324 aa, chain + ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 1 318 1 316 317 439 70.0 1e-123 MSEQYGDPRLKIFALNSNKPLAEKIAAEVGVQLGKSSVKRFSDGEIQINIEESIRGDDVY LIQSTSSPVNDNLMELLIMIDALRRASAHTINVVMPYYGYARQDRKARSREPITAKLVAN MLERAGATRVLALDLHAAQIQGFFDIPVDHLVGAPLLADYFLRNHYDGADTVVVSPDHGG VTRARKLAEFLKAPIAIIDKRRPRPNVAEVMNIVGNVTGKQCIIIDDMIDTAGTITLAAQ ALKDAGATEVLVAATHAIFSGPAVERLTHSAIEKVVVTDSINLPADKHMDKLDVVSVGPL MGRAIMRIQENRSVTPLFENRFTK >gi|225002551|gb|ACIZ01000028.1| GENE 10 9207 - 9536 385 109 aa, chain + ## HITS:1 COG:BH0816 KEGG:ns NR:ns ## COG: BH0816 COG4043 # Protein_GI_number: 15613379 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 3 108 5 110 113 67 38.0 8e-12 MEMGLAHDQFLLVQAGTKTIEIRLNDQKRPQLEVGDQIVFEDLATQQQVTKKVTQLEKFG TFSQLYQQYQGTAVGSAPTDSVAKMVADTYRIYTPQQEKKHGVLAIHLG >gi|225002551|gb|ACIZ01000028.1| GENE 11 9625 - 10059 142 144 aa, chain + ## HITS:1 COG:no KEGG:LC705_02567 NR:ns ## KEGG: LC705_02567 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 144 1 144 144 276 100.0 1e-73 MHKRLRLIAAYGLLMLFFHLKKTSGFDFTPTIGDGYLLISWLVLAPRYLDQIDHSAQRFA STGRSTKDYVADMEKNMNLYQDFIYATTPVMATILESGGIDTIGVVIVKFVFQVLLVLTA PILWTLALGFRQLQQAWHRIHLRQ >gi|225002551|gb|ACIZ01000028.1| GENE 12 9993 - 10124 61 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDSGAWLQTTSASMAQDPLATVTVKNAMRTVSELFSQQVIEGS >gi|225002551|gb|ACIZ01000028.1| GENE 13 10211 - 10591 394 126 aa, chain - ## HITS:1 COG:L153973 KEGG:ns NR:ns ## COG: L153973 COG1970 # Protein_GI_number: 15674083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Lactococcus lactis # 1 120 1 122 122 124 58.0 4e-29 MLKEFRQFIMRGNVLDLAVGVIIGSAFTGLVTSLTKNLINPILSIFAGKTDLSGLSVTLL GAKFTYGNFLNDVINFLIIAFVVFMIVRSVNRFLPAKPTKAAGPTQAELLTEIRDLLKEK NDHSQV >gi|225002551|gb|ACIZ01000028.1| GENE 14 10654 - 11022 238 122 aa, chain - ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 109 225 331 344 99 44.0 1e-21 MQRYALGKGIPEADTLLEDQSTTTLENMRFSKRLIIQEIGEAPYKASFFTNNYHLLRAGI FARMAGIAANGVGGNTSFYFLPNAVIREYLALVVLYKRRHAVAFGVIVLIALGQFIRAWQ LG >gi|225002551|gb|ACIZ01000028.1| GENE 15 10920 - 11711 464 263 aa, chain - ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 220 1 215 344 72 31.0 7e-13 MSAQETLFVFTIPLLLGIIFAISFTIEPRRLLNGWLFNLFAVVFLIALAAAILKSGNLLL IAVTGTLFVITVLIVFLLFALHLFWLLWNAILVWRREGHSLSNMLTLYIAIGLLLLEIAA SFGRRFIPEPLYVALAVFFGLGGLYVLLTLYNFLTALILYNLRPQPHNRTFLIVLGAGLL HGDQVSPLLASRIDTAIKFYHKQLKKGRPAPKIIFPGVKAQMRLFPKHSPCSVTLWEKGF PRPIPYLKISQLPPLKICGFQNG >gi|225002551|gb|ACIZ01000028.1| GENE 16 11783 - 12235 438 150 aa, chain + ## HITS:1 COG:SPy1510 KEGG:ns NR:ns ## COG: SPy1510 COG0494 # Protein_GI_number: 15675412 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pyogenes M1 GAS # 1 143 1 143 151 130 44.0 9e-31 MIDPVFGRKDPKLDYHTRIGAYGVIPDHSGARLLILQAPNHALFLPGGGVEKGETPEETL ARELLEEFGATVHVTKKLGKSSEYFYSHHRQTAYYHPATFFACDELAFVQDPLETFNTLM LMPIDLALAELKRPTHRWAVAKWLAQQPKQ >gi|225002551|gb|ACIZ01000028.1| GENE 17 12247 - 13599 1175 450 aa, chain - ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 9 440 3 426 434 523 60.0 1e-148 MQFEKLPREKVFRDPVHNYVHVQHRVILDLINTPEFQRLRRIKQLGVSDYVFQGAEHTRF AHSLGVYEIAREMCDNFVINYPSQTPGDGLWNDAERPVVLCAALLHDIGHGAYSHTFEHI FGTDHEAITRAILTDPHTNVNRILRGVSAEFPEQVASVINHTYPNPQVVQMISSQIDADR MDYLLHDAYYTGTKYGLFDLSRILRVMRPYSDGIAYEANGMHAVEDYVVSRFQMYQQVYF HPVSRGMEVILFHLLKRAKFLYESGQFEPGFSPRLLVPFFEQSFSLTDYLKLDDGVLNTY FTYWLDYPDSILSDFADRFLNRRPLKSVTFTDQTAALLPKLRALVAQAGFDPQYYTAEND SFDLPYDQYDPASANPKTQIEIMQKDGTLEELSTLSPLVAALSGRATGDKRFYFPKEMLA SEDSSLFSPIYEKFQRYLLNGGVIDPHLTD >gi|225002551|gb|ACIZ01000028.1| GENE 18 13589 - 14437 425 282 aa, chain - ## HITS:1 COG:lin2711 KEGG:ns NR:ns ## COG: lin2711 COG0095 # Protein_GI_number: 16801772 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 1 261 1 271 278 179 39.0 5e-45 MDLTSLAGQQAAIFQQDFTKDEAPLSFAHTNALLAHPELHPPLMLHFWTAEQTVILGMQD LKLPQLGHGLPVLSSEQYGVFVRNSGGLAVIADSGVLNVSLFLPNETRLTIDTAYELMTS LFRTAFPALKIATSEITHSYCPGKYDLSVGGQKFAGMAQRRNQAGVVVMLYCSIFGDQNA RCDLLRRFYRAGHASASPHFTFPLIRSETMTTLSDLLDRPLTRNEAILAILNALATYGIA ADMNSMPAILRDPAYHQALAAATADLRTRNRNLKKMGEHHAI Prediction of potential genes in microbial genomes Time: Wed May 25 19:36:22 2011 Seq name: gi|225002550|gb|ACIZ01000029.1| Lactobacillus rhamnosus LMS2-1 contig00032, whole genome shotgun sequence Length of sequence - 6820 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 5, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 59 - 505 521 ## LGG_02552 hypothetical protein 2 1 Op 2 . + CDS 558 - 1229 697 ## COG3343 DNA-directed RNA polymerase, delta subunit + Term 1239 - 1275 4.1 + Prom 1256 - 1315 5.2 3 2 Tu 1 . + CDS 1457 - 2332 737 ## COG3548 Predicted integral membrane protein + Prom 2385 - 2444 5.8 4 3 Op 1 . + CDS 2583 - 2939 143 ## LC705_02557 hypothetical protein 5 3 Op 2 . + CDS 2979 - 3323 194 ## LC705_02556 hypothetical protein + Term 3354 - 3382 2.3 - Term 3342 - 3370 2.3 6 4 Tu 1 . - CDS 3424 - 4611 986 ## COG1252 NADH dehydrogenase, FAD-containing subunit - Prom 4709 - 4768 5.8 + Prom 4877 - 4936 6.8 7 5 Tu 1 . + CDS 5042 - 6646 1367 ## COG0504 CTP synthase (UTP-ammonia lyase) + Term 6660 - 6709 6.7 Predicted protein(s) >gi|225002550|gb|ACIZ01000029.1| GENE 1 59 - 505 521 148 aa, chain + ## HITS:1 COG:no KEGG:LGG_02552 NR:ns ## KEGG: LGG_02552 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 148 1 148 148 286 100.0 2e-76 MDLSQGVPIQIHLETFVTQGDDQETHVFDEPGTLVQMGNALYIRYQEVDEDAGTSMPVTM KLREDGDIQLSRGSSNGDTQLKLFFADEKRVLTRYRTPYGIIPVETVTPRIDVRMTTEPV AGEIYVEYELFANRQHLGNYRLRLQFKA >gi|225002550|gb|ACIZ01000029.1| GENE 2 558 - 1229 697 223 aa, chain + ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 139 1 138 191 112 60.0 5e-25 MKLKAFANADKSELSMIEVAHEILEEKGDTMAFVDLANEIQNYLGKSDEEIRERLPQFYT DLNVDGSFISLGDNVWGLRAWYPYDSVDEEVNHPEDEEEVPRRKKRKKVNAFLADVADDD DVIDYNDDDPEDEDLDADSDDDDFDDDDSTGFHDKIGKAGDSDDDSDDDPDDGLPDGIEG QLAEFGDNDSDDDDDTDDITADFSGDDDDDSDNDDDEDDNDKH >gi|225002550|gb|ACIZ01000029.1| GENE 3 1457 - 2332 737 291 aa, chain + ## HITS:1 COG:L111003 KEGG:ns NR:ns ## COG: L111003 COG3548 # Protein_GI_number: 15672091 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 4 186 123 303 331 91 27.0 2e-18 MISEDLKTRLDTFIDAILAIIITIMVLELPAESWQNHTHISAFFLAVGIYAVSFCFVANI WYQQATLFSQVKQIPRRIVIWEFILVFLLSLVPALTRLMSGDVEVLSVVIYGALYLLVIT VFRIISRTIVHQQASNKAEMQQIYTSIYGAHNLENFLMIAAIMVLAVFLPKAAYILYIAI PIRSFFTIDSDARELTGMQQMATTGQRNYLKMNRDQQMRFRRLVGEYIRDLRSAHGDQAA NKAAWEKFSRTAQQELKIDPAMLDQWFTTFRQSKNKDYRNKTPRRPDSRRS >gi|225002550|gb|ACIZ01000029.1| GENE 4 2583 - 2939 143 118 aa, chain + ## HITS:1 COG:no KEGG:LC705_02557 NR:ns ## KEGG: LC705_02557 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 118 1 118 118 219 100.0 2e-56 MTYFDKIVNFIAKTCQVSDLLEKEENDDFVFFKVRGLSSYNNLMHALNFLSAMAGFLEQL SLPLQIQVTQIPLSGNESKVDVIVTKLLKSEYHHAVQKLEKAVNQTNKNANGGKRFGF >gi|225002550|gb|ACIZ01000029.1| GENE 5 2979 - 3323 194 114 aa, chain + ## HITS:1 COG:no KEGG:LC705_02556 NR:ns ## KEGG: LC705_02556 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 114 1 114 114 191 100.0 8e-48 MTYFDRAINNFAKASKVDNLLEKEEIETFVIYFINNLSSYDNLMHALQFLAALSDFFEQS NLPLRIQVMEIPLSDNESKVDYITIRLLITEYNHAVRKMEEAVNQNDRNANQGE >gi|225002550|gb|ACIZ01000029.1| GENE 6 3424 - 4611 986 395 aa, chain - ## HITS:1 COG:lin2488 KEGG:ns NR:ns ## COG: lin2488 COG1252 # Protein_GI_number: 16801550 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Listeria innocua # 4 393 6 399 403 268 40.0 1e-71 MADVVILGAGYAGIRAVKTLSKLAPKGTTLTVVDQNANHEERTQLHEVAAGTVPATKITF NIQQVLPKDVQFIQSKVSKVDVSSKLVILENHAPLRYDYLIIALGFRSEDFGLPGAAENA LPLDNVTSAETIAKTIELRVANYKQSQDPKDLTVIVAGAGFTGVELLGELTHSLPALAKK YDTPPVKIISMEMATRILPMFDEKLANYAMDYLKSHGVTMMTGSKITKIEPNAVVYADGD QEKKVEGNTIIWTVGVSGSDVIADSGFNQRRNRVVVSNHLNLTDHPEVFIIGDVSAVMTD AGRPYPTTAQISSQEGDHAGKNVAAALNGQPLTDFVYKSKGTVASLGSQDGIAQIGKSHK YTGFIAKVLKRVITDKSLLEDANLSTMLKQGRWPL >gi|225002550|gb|ACIZ01000029.1| GENE 7 5042 - 6646 1367 534 aa, chain + ## HITS:1 COG:SPy1894 KEGG:ns NR:ns ## COG: SPy1894 COG0504 # Protein_GI_number: 15675707 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pyogenes M1 GAS # 1 529 1 529 534 790 71.0 0 MTKYIFVTGGVVSSLGKGIVAASLGRLLKNRGLKITIQKFDPYINVDPGTMNPYQHGEVF VTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLQRERRGEYLGATVQVIPHITN MIKEKVMRAAKHSDSDVIITEIGGTVGDIESLPFLEAIRQMKRDVGSENVFYIHASLVPY LRAADEMKTKPTQHSVKELRSIGIQPNMLVVRTEKPITEEMKKKIALFTDVPENAVIESR DAKTLYSIPLALQAQKMDQIVVDHFGFDVPPADMTDWTKLEHKVQHLTHQTKIALVGKYV ALKDAYISVAEALKHAGYYWDSDIDLQMFQAEDVNDDNVESLLQGFDGILVPGGFGDRGL EGKIAAIRYARENDIPFLGICLGMQMASIEFARNVLGLKDAGTTETHPDVKDPVIDLMRD QVGVKNLGGTLRLGLYPCVLKPGSVAAKAYDNAHEIEKRHRHRYEFNTKYRKPMEEKGLV FSGVSPDDRLMEIIEYPKNKFFVASQYHPEFQSRPNKPEGLFKAFIQSAGDFKN Prediction of potential genes in microbial genomes Time: Wed May 25 19:36:31 2011 Seq name: gi|225002549|gb|ACIZ01000030.1| Lactobacillus rhamnosus LMS2-1 contig00033, whole genome shotgun sequence Length of sequence - 6768 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 4, operones - 4 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 4 - 63 3.0 1 1 Op 1 . + CDS 175 - 1434 1408 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 2 1 Op 2 . + CDS 1531 - 1782 442 ## PROTEIN SUPPORTED gi|229551511|ref|ZP_04440236.1| ribosomal protein L31 + Term 1843 - 1895 9.2 3 2 Op 1 . - CDS 1913 - 3175 1175 ## COG0582 Integrase 4 2 Op 2 . - CDS 3227 - 3541 139 ## smi_1794 hypothetical protein - Term 3765 - 3805 9.1 5 3 Op 1 . - CDS 3849 - 4106 223 ## LCABL_21520 hypothetical protein 6 3 Op 2 . - CDS 4127 - 4525 474 ## LCABL_21510 hypothetical protein - Prom 4553 - 4612 3.5 7 4 Op 1 . - CDS 4853 - 6055 496 ## COG3316 Transposase and inactivated derivatives 8 4 Op 2 . - CDS 6127 - 6456 193 ## LSEI_1235 hypothetical protein - Prom 6622 - 6681 3.0 Predicted protein(s) >gi|225002549|gb|ACIZ01000030.1| GENE 1 175 - 1434 1408 419 aa, chain + ## HITS:1 COG:SP1081 KEGG:ns NR:ns ## COG: SP1081 COG0766 # Protein_GI_number: 15900950 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Streptococcus pneumoniae TIGR4 # 1 419 1 418 419 448 59.0 1e-126 MEKMLIHGGKKLSGEVVIGGAKNSTVALIPAAILSRTPVTLDSVPHIQDVYNLMAILSDM NVKSDFTENVLTIDPTEINDVPLPNGKIKSLRASYYFMGALLGRFGKAIVGLPGGDDIGP RPIDQHIKGFEALGASVSNEHGAMAIKAPAEGLHGARIFLDMVSVGATINVILAAVTAKG RTVIENAAKEPEIIDLATYLNNMGGKVRGAGTDVIRIDGVPTLEAHNSHTIIPDRIEAGT YLAMAAAVGEGVKVKNIISEHLDAFLAKLEEMGVVMDVGEDSIFVYPSGDLKMVQIKTMP YPGFATDLQQPITPLMLKAHGEGLIIDTIYPKRVRHIPELLRMGADITIENDVIILHHCD HLQGTEVAAEEIRAGACLMIAGLMAEGTTTITKVDNILRGYDRVVMKLRGLGADVELVD >gi|225002549|gb|ACIZ01000030.1| GENE 2 1531 - 1782 442 83 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229551511|ref|ZP_04440236.1| ribosomal protein L31 [Lactobacillus rhamnosus LMS2-1] # 1 83 1 83 83 174 100 1e-43 MKQGIHPDYHLVVFMDSATGFKFISGSTKTSKETIKWEDGKEYPLVRVEISSDSHPFYTG KQKFTQADGRVDRFNKKYGLTSK >gi|225002549|gb|ACIZ01000030.1| GENE 3 1913 - 3175 1175 420 aa, chain - ## HITS:1 COG:SPy2122 KEGG:ns NR:ns ## COG: SPy2122 COG0582 # Protein_GI_number: 15675872 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pyogenes M1 GAS # 48 383 41 355 381 70 23.0 7e-12 MSITKTKAGTYQVSVFYPKAVRELMGVAGQTRFRETISTKQAAVAKEREINKKIKEAQKN GNARSLELKGKILFKTFYKDVFMPLYLTGSTGRAPVVPTKATVEYQRGLFKNHLLPMFGS YSMTYLNSNKEFVVDRLKEKSEHFANIKTVKAYVRQMFEVAEILDYIEYDRVGKSLRLVG QPHKDKLKKERVKKGEFLTAEQLLDWLQATKEDYERGKLSLADYTLFLLTLHLGDRKSES YALQWKHIDLEAGKLYLVQSLDGNRDAKDTKGHKQSIMTLPQDILYLLADWKAEQAKQLE AIGVEQDGEQWLFTYVTREGVRNQPLYSDYLNARIKSVNRRHPELVYLHPHKMRHTFSTL ARQGGASMEDISSALTHSNVSTTRTYVNTPDIITTVTHQRFLDRLNSARLEKQKDVQNSN >gi|225002549|gb|ACIZ01000030.1| GENE 4 3227 - 3541 139 104 aa, chain - ## HITS:1 COG:no KEGG:smi_1794 NR:ns ## KEGG: smi_1794 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 15 97 1 83 89 74 39.0 8e-13 MKGSGTISQEIRHEMSFVLSDGQIDTIRNKVFEIIREEVNSVRHEALLNVRYFKKGEACK YLNVSYNTLDVWIMLGLPKITIGNSVRFDRIELDKWMQGMSVGC >gi|225002549|gb|ACIZ01000030.1| GENE 5 3849 - 4106 223 85 aa, chain - ## HITS:1 COG:no KEGG:LCABL_21520 NR:ns ## KEGG: LCABL_21520 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 83 1 83 83 85 49.0 5e-16 MHYTEVDNLIPVILAAQDGDAEAMSQLLDMFSYDFDREAAYGKSYIDPDLRQELQIKFVF SVQRFNVAEHLSQPSTQSSSQLTRT >gi|225002549|gb|ACIZ01000030.1| GENE 6 4127 - 4525 474 132 aa, chain - ## HITS:1 COG:no KEGG:LCABL_21510 NR:ns ## KEGG: LCABL_21510 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 132 1 132 132 200 92.0 1e-50 MSSEQEVTRMFIRYVQQALKNERINRYKASLRQIKEIPLEAWLLEEIEDSYHLDEFRLTD EEIEHLEDFIESEKLSRAVSTLSSTDKTVLYQYYYGELNDVEIGNRSGKTSQGVNKRRRR ALARIKEAYENM >gi|225002549|gb|ACIZ01000030.1| GENE 7 4853 - 6055 496 400 aa, chain - ## HITS:1 COG:pli0024 KEGG:ns NR:ns ## COG: pli0024 COG3316 # Protein_GI_number: 18450307 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 174 400 1 226 226 234 53.0 3e-61 MKSITSKSIASITGISTTTVGRILDDNINPRPLNYLPTNLCFDAFRSTHPQMAFICIDAD THKRVTVLGDRLSDTIKKFFEENYSRDERAKVKHICMDMNAAYQNFVHELFPNAEIVIDR FHIIQLLGRAMDQMRVQALRQIKDKHSRVGSGAKFAWQLHSSILSDKKRGIVRMNYFKGR HFQQDSIIVAVGYYFRFSLSYRDIVELLRDRGVSVHHTTVMRWVHHYGPIFKALWRQHQT SHTKSWRIDEAYINVKGHWTYLYRAIDSNGLTLDFELRKHRDYAAAYHFLKRLLTTDGRP DRLVTDQYRATLKAVKHLMKQDYLSKSAHQCSKYRNNLIEQDHRFIKRHRVRSASFQNIR TASATLSGIEVIHALRKKTRRELSLIGFSAVDELKAMVPA >gi|225002549|gb|ACIZ01000030.1| GENE 8 6127 - 6456 193 109 aa, chain - ## HITS:1 COG:no KEGG:LSEI_1235 NR:ns ## KEGG: LSEI_1235 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 109 363 471 471 213 97.0 2e-54 MDIRICGPKLGRHPKHVDAAKRREDTDAENRRGTIERRFAFMNGTLGLDLVNTRTAESLA VKIDAAIVLSNVLTLLRVFAIPILILAKFEGEAYQIRYKFTTRVEDMVA Prediction of potential genes in microbial genomes Time: Wed May 25 19:36:40 2011 Seq name: gi|225002548|gb|ACIZ01000031.1| Lactobacillus rhamnosus LMS2-1 contig00034, whole genome shotgun sequence Length of sequence - 3080 bp Number of predicted genes - 7, with homology - 6 Number of transcription units - 3, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 38 - 262 106 ## Tola_1184 protein of unknown function DUF262 2 1 Op 2 . + CDS 274 - 390 77 ## + Prom 403 - 462 4.4 3 2 Op 1 . + CDS 490 - 756 224 ## gi|229551519|ref|ZP_04440244.1| hypothetical protein HMPREF0539_0775 4 2 Op 2 . + CDS 746 - 1900 916 ## COG3597 Uncharacterized protein/domain associated with GTPases 5 2 Op 3 . + CDS 1910 - 2683 304 ## gi|229551521|ref|ZP_04440246.1| hypothetical protein HMPREF0539_0777 - Term 2586 - 2627 1.1 6 3 Op 1 . - CDS 2645 - 2863 111 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 7 3 Op 2 . - CDS 2872 - 3078 86 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|225002548|gb|ACIZ01000031.1| GENE 1 38 - 262 106 74 aa, chain + ## HITS:1 COG:no KEGG:Tola_1184 NR:ns ## KEGG: Tola_1184 # Name: not_defined # Def: protein of unknown function DUF262 # Organism: T.auensis # Pathway: not_defined # 6 67 552 611 659 68 53.0 5e-11 MSSSDFEFKYRNSVEHFYPQNPNADEGHEKLPPEELNNFGNLCIMARGHNSLRSNLMPDA KIKEFKATDQSLKV >gi|225002548|gb|ACIZ01000031.1| GENE 2 274 - 390 77 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQKLAENDNIWYIDQINKHSQQMKDILSEFVEKDDKKL >gi|225002548|gb|ACIZ01000031.1| GENE 3 490 - 756 224 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551519|ref|ZP_04440244.1| ## NR: gi|229551519|ref|ZP_04440244.1| hypothetical protein HMPREF0539_0775 [Lactobacillus rhamnosus LMS2-1] # 1 88 1 88 88 100 100.0 2e-20 MEETEMEKFVTEKTKKKKKTHKIVRTIGATSIAIGSAVVAAKAVSKLAAAINKASVKYSN HKSDEVDWGPEMVKRIDYKESERDENAD >gi|225002548|gb|ACIZ01000031.1| GENE 4 746 - 1900 916 384 aa, chain + ## HITS:1 COG:jhp0681_2 KEGG:ns NR:ns ## COG: jhp0681_2 COG3597 # Protein_GI_number: 15611748 # Func_class: S Function unknown # Function: Uncharacterized protein/domain associated with GTPases # Organism: Helicobacter pylori J99 # 235 381 3 143 147 85 35.0 1e-16 MQIDTDKMAQQLIDTVKDKIKNLKTLNIIIIGKSGVGKSTLINTLFRGNFAETGLGRPVT SEIRKLSKKDYPLSIYDTPGFELSHEQQAKVKDEVLELIDKGYAAKDINEAIHCIWYCVN VGANRTFDSSEIEWLKSFAESNKKSQVPIIVVLTQAVPKKKAAEMKTMIEKENLDIVKVV PLLAQDMDFDEEYIAKAYGLDSLIDVMTEVLPSELQNTLQNVQIASLASKKKAARAAVAA ALAAAFGEGFAPIPFADAALLIPTQVGMIAGITVIFGLDISKSFLTAFVSSTIGSSGATV LGKTIVANLLKFIPGLGTGAGGAISATTAGLLTTALGLAYIQIMEMVYNGEISKEDLYSA EGKKTMKSLFKNQLKNSSNVEVNG >gi|225002548|gb|ACIZ01000031.1| GENE 5 1910 - 2683 304 257 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551521|ref|ZP_04440246.1| ## NR: gi|229551521|ref|ZP_04440246.1| hypothetical protein HMPREF0539_0777 [Lactobacillus rhamnosus LMS2-1] # 1 257 1 257 257 488 100.0 1e-136 MDKNLDEIFDLIIAGESKRIISISNGVKVEKSPSYFRYMKRMYSKSWDTMYNPNNVFIPY ILVSIEFILRQLVDVDITVSTKAPTAKELLDALTGKKRALATTEDDFIYHVGKQLEGNKM QILGYAKSDSDIPKIKGYLISNGQLADSEIIISKFNKNGYIKNLYEILSSIRKKYYDEIP EFGNSYRNLVMHANRFLMLEKDDMFEELLTDYSKLINSVWGDAVMPYDKQRVLEKDPKSP WYDELSNQVQLFTHEDF >gi|225002548|gb|ACIZ01000031.1| GENE 6 2645 - 2863 111 72 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 66 253 316 317 47 34 6e-11 VFFPDPHAPQQRGTNENTNGLIREYSPKNTDLDLQSDQEIETYIEQLNNRPRKVLGWKTP SEVFMGKKLHLI >gi|225002548|gb|ACIZ01000031.1| GENE 7 2872 - 3078 86 68 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 8 65 193 247 317 37 34 6e-11 SAYIHSALVTLVDRKSRYLLSKRTANAKADTVRDVMIELLGALPANRVRTVTPDRGREFA RYRELAER Prediction of potential genes in microbial genomes Time: Wed May 25 19:37:03 2011 Seq name: gi|225002547|gb|ACIZ01000032.1| Lactobacillus rhamnosus LMS2-1 contig00035, whole genome shotgun sequence Length of sequence - 2353 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 203 87 ## LSEI_0446 transposase - Term 195 - 241 7.2 2 2 Op 1 1/0.000 - CDS 330 - 1598 646 ## COG0431 Predicted flavoprotein 3 2 Op 2 . - CDS 1609 - 2217 403 ## COG0431 Predicted flavoprotein - Prom 2271 - 2330 4.5 Predicted protein(s) >gi|225002547|gb|ACIZ01000032.1| GENE 1 3 - 203 87 66 aa, chain + ## HITS:1 COG:no KEGG:LSEI_0446 NR:ns ## KEGG: LSEI_0446 # Name: not_defined # Def: transposase # Organism: L.casei # Pathway: not_defined # 1 66 349 414 414 139 100.0 4e-32 EPNGTAMDMTIATLKRHKVAVLAAVTSPYSNGPIEGVNRLIKSLKRSCFGFKNQLNFFKR IYQITA >gi|225002547|gb|ACIZ01000032.1| GENE 2 330 - 1598 646 422 aa, chain - ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 186 1 186 187 210 50.0 4e-54 MKIVAIAGSIADISYNRQLLTFIANHYASQIDIELLEIKNIPMFNEDKDQTQSAAVQFLV HKIESADGVILATPEHNHTTSPAMKNVIEWLSYKVHPLNQKPVLIVGASWHTQGSSRAQL ALRQIMESPGVGALVMPGNEFLLADAKKAFDELGNLKDSKTIAFLDTVINKFIRWINVLD ALQEKKKQEPWRQEDLAGKHPVETSIDIDISDDWVEKAAKLVKATSGNHYVQLNRGVLTV DQLNWFLNSMPVELTFMDDNDQFIYYNHFLDHDAMLAPRDPKQVGNTADLVHPKRAVEHA QQVIWALRQGQKELIAMPVPGNKINQKYIMHFYKAMHDADGRYRGVNEWVLDIWPIVSDY LKRTGQKLIKDPDSKPDATTSVSQSEPQRVLSSRVEGKDVQTINDMKTSTADAVTGASET TK >gi|225002547|gb|ACIZ01000032.1| GENE 3 1609 - 2217 403 202 aa, chain - ## HITS:1 COG:SP1471 KEGG:ns NR:ns ## COG: SP1471 COG0431 # Protein_GI_number: 15901321 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 201 1 200 201 221 51.0 8e-58 MLHYVGIAGTNIQRSTNLKLLQYMKKHYSEEAVIEIVDISNLPVFYKASQDHIPEAVNVI SEKIRKADGVIIATPEYDHAIPAVLSSALAWFSYRIHPFAGKPVMIVGASYGSLGTSRAQ SQLRQILDSPELKASIMPSSEFLVGHSLEAFDDSGNLKNLRLGVQLNGLFSDFSVFVKLT KQMIHSQKQAKEQTKNVNWQDN Prediction of potential genes in microbial genomes Time: Wed May 25 19:37:07 2011 Seq name: gi|225002546|gb|ACIZ01000033.1| Lactobacillus rhamnosus LMS2-1 contig00036, whole genome shotgun sequence Length of sequence - 4613 bp Number of predicted genes - 5, with homology - 4 Number of transcription units - 3, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 127 98 ## 2 1 Op 2 . + CDS 120 - 344 328 ## LCABL_28400 hypothetical protein + Term 359 - 418 17.6 - Term 346 - 406 17.0 3 2 Op 1 2/1.000 - CDS 435 - 3380 2659 ## COG1511 Predicted membrane protein 4 2 Op 2 . - CDS 3388 - 3957 475 ## COG1309 Transcriptional regulator - Prom 3989 - 4048 7.0 5 3 Tu 1 . + CDS 4314 - 4611 69 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases Predicted protein(s) >gi|225002546|gb|ACIZ01000033.1| GENE 1 2 - 127 98 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no EAKKTPAKKQDESADDIDLNDLSGLDFSQTSHEKKKDDSDE >gi|225002546|gb|ACIZ01000033.1| GENE 2 120 - 344 328 74 aa, chain + ## HITS:1 COG:no KEGG:LCABL_28400 NR:ns ## KEGG: LCABL_28400 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 74 9 82 86 105 72.0 4e-22 MSKIMASFLVFIDTIGVAIALLGGNMMLCLLMGIMTIILYVKVNPILFGDYDRRREERIE QRRKALTARRENDK >gi|225002546|gb|ACIZ01000033.1| GENE 3 435 - 3380 2659 981 aa, chain - ## HITS:1 COG:lin2460 KEGG:ns NR:ns ## COG: lin2460 COG1511 # Protein_GI_number: 16801522 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 980 3 926 927 602 39.0 1e-171 MIKDEFKFIGKNKLILVSVLVIILIPFLYSIFFLKSVWDPYGDTQNLPVAVVNLDQPVTY QGKKLNVGEQTVNKLKNNKKLGWHFVSKAQADKGMKANKYYTVITLPKDFSKNAATILDE HPRKMDLKYQTNDSLNYIGQVISGIGLNALNSEIRANVTNAYASAVFDQIKTIGKGMKNA ADAATQIDEGQVKLDDGIDQYTVAVSQVNDGIQTMKVKVSPMSSQIPQLASGANQVASGL QTLNGSTTQLASGVGQLANGSNQVTNGLGTLQSKTGTLSSGVGQLASGSNQVTSGLGTLQ SKTGTLSSGVGQLASGSNQVTSGLGTLQSKTGTLSSGVGQLATGSNQVTNGLGTLQTESG QLANGTTQLQTGSASLTTGVKNYTDGVTSLSKGIDQLAGTTGSLATDTNSLATGSSDLTN GLQQLSGSVDSQNKQAVESAAKLQESLKKYEATLKAKTNQDPDLVAGFEQLETNINALMT QTESSGTSLSTTLNQKLIPGSKKVSDGLTTLNQRVPTLTAAITGLQNGATKIISNNDQLV TGTNSLNSGINQLATKAPSLVDGVSQLYSGSGKVSGGLSTLNGQIPTLTNGVSQLYSGSG QVSGGLNTLNGQIPTLTNGVSQLYSGSSQVSGGLTSLNGQIPTLTNGVSQLYSGSSQVSG GLSTMNGQVPTLTNGVSQLANGAGQVANGVGQLNANVPTLVSGVNQLADGTSQITTQSGT LKSGSTQLKNGDKKFAKTLSSSAKKVNGITVTSDTKKMFAAPTKMSHKHYSYVPNYGHAL APYVLSLALYVGALVFNFAYPIRKVSKADGTATQWFFSKITIGAVVAVATAIVEATLMMA VGLNVDHVGQFYLTAILFSLTSMYLIMFLSMAFDNPGRFLAMVGLMLQLGGSGGTFPMEL TNQFYNIIHPFLPMSYSIMNFRNAITSGIASNTVTLGYIVIIAFALGSLLLLWITMILLQ RYHKMGISQLDDNQKLQTVEK >gi|225002546|gb|ACIZ01000033.1| GENE 4 3388 - 3957 475 189 aa, chain - ## HITS:1 COG:L130713 KEGG:ns NR:ns ## COG: L130713 COG1309 # Protein_GI_number: 15672109 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 8 187 6 185 191 59 24.0 4e-09 MTTKHQILHREIVLDAARTIVAQDGIRDLTFQTLAKELNICSQSLYNYFPNLPAVIEALG TEFMHNLYQELIENVSGISGKEAIRAFAEVAHCYFERQQSLDEIIYFVHQFPESSPFVQG TGDVINLLKRLIAHTELKQMAKESFVQDFISSVLGFTVLGVMGFLPDNKASRDTSFESLL DMYLNEIKE >gi|225002546|gb|ACIZ01000033.1| GENE 5 4314 - 4611 69 99 aa, chain + ## HITS:1 COG:YPO4075 KEGG:ns NR:ns ## COG: YPO4075 COG0454 # Protein_GI_number: 16124187 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Yersinia pestis # 1 99 14 120 151 64 35.0 4e-11 MRLWLQGNLQAHQFIHAEYWKSNAPLVRPLIQQSTLWIVREGATVIAFCGLQQDFIAGFF VDEKHRGRGVGTALMAKLQGTYSKLRLTVYQKNIRAAQF Prediction of potential genes in microbial genomes Time: Wed May 25 19:37:14 2011 Seq name: gi|225002545|gb|ACIZ01000034.1| Lactobacillus rhamnosus LMS2-1 contig00037, whole genome shotgun sequence Length of sequence - 3757 bp Number of predicted genes - 6, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 22 - 405 269 ## COG3048 D-serine dehydratase + Term 442 - 493 3.3 + Prom 520 - 579 7.0 2 2 Op 1 45/0.000 + CDS 625 - 1368 287 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 3 2 Op 2 3/0.000 + CDS 1385 - 2563 1027 ## COG0842 ABC-type multidrug transport system, permease component 4 2 Op 3 . + CDS 2568 - 3239 688 ## COG1309 Transcriptional regulator + Term 3259 - 3324 22.2 5 3 Tu 1 . - CDS 3329 - 3442 67 ## 6 4 Tu 1 . - CDS 3548 - 3757 192 ## LGG_00437 cytosolic protein Predicted protein(s) >gi|225002545|gb|ACIZ01000034.1| GENE 1 22 - 405 269 127 aa, chain + ## HITS:1 COG:BH1762 KEGG:ns NR:ns ## COG: BH1762 COG3048 # Protein_GI_number: 15614325 # Func_class: E Amino acid transport and metabolism # Function: D-serine dehydratase # Organism: Bacillus halodurans # 1 117 314 438 442 95 43.0 2e-20 MTKLNEKIAVQDIGLDGLTAAGGLAVSRPSRLAGKVMRTLLLGTATFEDNDSYRYLTKLV DTEDVMVEPSAAAGFTAIAPIMAQFPTLAGKDVTHIVWATGGDMMPESERQLDYELGQKS LTKINNR >gi|225002545|gb|ACIZ01000034.1| GENE 2 625 - 1368 287 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 3 210 2 213 311 115 33 7e-26 MATDYVIAKQVSKHFGHQQVLNQIDLTLPAGRIYGLIGPSGAGKTTLIKSILGMEAVDSG TVKVMDTVMPNRAVMAQVGYMAQSDALYETLTARENLTLFGQLMSVPKIKLAQMIDYAAG LVDLTSQLDKRVSGYSGGMKRRLSLAIALIQDPQLLILDEPTVGIDPELRQQIWTELNKL KDTGKSMLVTTHVMDEAEWCDYLMLIRHGIALAEGTPAALKQQYAVDTIEQVFLKAGRMQ DANDGNR >gi|225002545|gb|ACIZ01000034.1| GENE 3 1385 - 2563 1027 392 aa, chain + ## HITS:1 COG:lin0925 KEGG:ns NR:ns ## COG: lin0925 COG0842 # Protein_GI_number: 16799996 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 3 392 16 371 371 265 45.0 1e-70 MLRDKRTLALMFLAPLLIMALMYFLFQNNTTQVATLGVHNVDHQVVKAINTKHVDIHHYS SNQAKAMIKQHDLDGYLTQKDGNLTITYSNSNPTNTSLIKASLQSGLVKLKIQTLVTATK AQKKVLQTQKQATVSKLKTALAQAQASGNTAAAAKIQKQLTQATASATAPTNSQSQTTTY TTSSHYIYGSSDSTFFENFLPAFLGFFVFFFVFLISGVSLLNERTTGTLSRLLATPIRRS EIIMGYLIGYGGFAIIQTVLTVVFTITVFKIHLVGSIWLVFLTNLLLALVALTLGIFIST FANSEFQMIQFIPLIVVPQIFFAGLVPVDGMASWLQAIAHIMPLYYGANALTAVVTKGAG LGDIGVNLLILVGFMVVLTMLNIVGMKRYRKV >gi|225002545|gb|ACIZ01000034.1| GENE 4 2568 - 3239 688 223 aa, chain + ## HITS:1 COG:lin0926 KEGG:ns NR:ns ## COG: lin0926 COG1309 # Protein_GI_number: 16799997 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 13 193 13 195 218 124 40.0 2e-28 MERPRIRDYFQQDLSQNETITPKQRAILQASLDLFAEKGFDQTSTSDIAQRAGVAEGTVY RRYKTKAALRDAILAPIAAHIVPILASDFSEDELRQRYPSLQAFVTAIFTDRVAFAKANV KELKVIFEMAAFDTERREQILSQIAPKMVKQMGSVINQLKADHLIVDWPNDLILQSLLSQ LFGYLARLMLELPGTEIEREQAYLITVMTKILTPGEHDQITGQ >gi|225002545|gb|ACIZ01000034.1| GENE 5 3329 - 3442 67 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no METRFGSVNVNVEINVLLTVNDFKKDSLAVVGVCDQK >gi|225002545|gb|ACIZ01000034.1| GENE 6 3548 - 3757 192 69 aa, chain - ## HITS:1 COG:no KEGG:LGG_00437 NR:ns ## KEGG: LGG_00437 # Name: not_defined # Def: cytosolic protein # Organism: L.rhamnosus # Pathway: not_defined # 1 69 26 94 94 135 98.0 4e-31 VATILGAKPVNGIDKNVDILVVGIISKPYDQLLTTQKLTYARTYGIPKIDELAFISWCQW RLDQLKATL Prediction of potential genes in microbial genomes Time: Wed May 25 19:37:20 2011 Seq name: gi|225002544|gb|ACIZ01000035.1| Lactobacillus rhamnosus LMS2-1 contig00038, whole genome shotgun sequence Length of sequence - 2509 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 92 - 118 0.3 1 1 Tu 1 . - CDS 172 - 1761 1170 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) - Prom 1781 - 1840 1.7 Predicted protein(s) >gi|225002544|gb|ACIZ01000035.1| GENE 1 172 - 1761 1170 529 aa, chain - ## HITS:1 COG:L00396 KEGG:ns NR:ns ## COG: L00396 COG0367 # Protein_GI_number: 15672334 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 529 1 530 530 669 62.0 0 MCGFLAVDSKEFDLTTFCDALEKNVDRGPDMTETVEEDAVMFGFNRLAIMDLSDDGMQPF KGEDCTLVCNGEIYNFLQLKENVKDGFSFQSSSDCEVLIPLYRKYGLDTMCKMLDAEFAF VLYDKVAKKVVAGRDPIGIRPMFYGYTKGKGEIAFGSTAKTLMDLCDQIFPFPPGHYYDG EKFVTYRDPAMVTRMHTPSFEEATTGIRDYLVKGVEKRLHADAPVGYLLSGGLDSSLVCS IASKLMPGKKLRTFAIGMDRNPIDLKYAREVADYLGTDHTEFIMTRDDVLGALRKVIYTL ETWDITTIRASIGMYLLCKKIHETTDLKVILTGECSDEMFGYKYTDYAPNAEAFQSESMK RVRELYMYDVLRADRCISANSLEGRVPFADLDFVEYVMSLDPDMKMNHYDKGKYLLRMAF AGQDYLPDDILMREKAAFSDAVGHSLVDDLKEYADAKYTDEDVAKASEKYAYKTPFTKES LLYRDIFEEFFPGKAEWIKDYWMPNSDWEGCDVDDPSARVLSNYGDSGK Prediction of potential genes in microbial genomes Time: Wed May 25 19:37:23 2011 Seq name: gi|225002543|gb|ACIZ01000036.1| Lactobacillus rhamnosus LMS2-1 contig00039, whole genome shotgun sequence Length of sequence - 7461 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 8, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 7 - 66 4.9 1 1 Op 1 . + CDS 97 - 315 272 ## COG2608 Copper chaperone 2 1 Op 2 . + CDS 328 - 879 622 ## JDM1_2742 stress induced DNA binding protein (putative) + Term 903 - 956 12.3 + Prom 923 - 982 6.8 3 2 Tu 1 . + CDS 1006 - 1209 335 ## OEOE_0352 hypothetical protein + Term 1352 - 1412 6.6 - Term 1340 - 1400 2.8 4 3 Op 1 . - CDS 1422 - 1691 232 ## lp_3438 hypothetical protein 5 3 Op 2 . - CDS 1709 - 2029 249 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 2059 - 2118 5.3 + Prom 2002 - 2061 4.2 6 4 Tu 1 . + CDS 2242 - 2580 308 ## gi|229551543|ref|ZP_04440268.1| PapB protein + Term 2631 - 2677 2.4 + Prom 2937 - 2996 3.6 7 5 Op 1 . + CDS 3091 - 3324 132 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 8 5 Op 2 . + CDS 3381 - 3689 182 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 3763 - 3814 16.6 - Term 3749 - 3802 16.2 9 6 Tu 1 . - CDS 3839 - 5743 1924 ## COG2217 Cation transport ATPase - Prom 5770 - 5829 3.6 10 7 Tu 1 . - CDS 6418 - 7104 584 ## COG3316 Transposase and inactivated derivatives - Prom 7124 - 7183 1.7 11 8 Tu 1 . - CDS 7239 - 7460 167 ## LVIS_1300 IS30 family transposase Predicted protein(s) >gi|225002543|gb|ACIZ01000036.1| GENE 1 97 - 315 272 72 aa, chain + ## HITS:1 COG:L134080 KEGG:ns NR:ns ## COG: L134080 COG2608 # Protein_GI_number: 15674047 # Func_class: P Inorganic ion transport and metabolism # Function: Copper chaperone # Organism: Lactococcus lactis # 2 71 3 72 75 69 58.0 1e-12 MKIIMQLGTLTCPSCMTKIEKAVSNHEGVENVKVLFNASKVKANFDPEVTSADDLAQVVT GLGYEVENVKVK >gi|225002543|gb|ACIZ01000036.1| GENE 2 328 - 879 622 183 aa, chain + ## HITS:1 COG:no KEGG:JDM1_2742 NR:ns ## KEGG: JDM1_2742 # Name: not_defined # Def: stress induced DNA binding protein (putative) # Organism: L.plantarum_JDM1 # Pathway: not_defined # 1 175 1 175 183 311 96.0 8e-84 MSELTIDEQYAAELKQSDIDHHVPTAGAMTNHILSNLMVAYVKLSQVKWYVKGPQSLALR TEYQQLIDQNVRQFAELGDLLLDENQKPSSTTAELTKYSMLEENGAFKYQSADELVAATI KDFDTENLFVDRAIKLAEKETRPALAAWLVAYRGSNNRNIRELQAYLGNEARTGLDEEDE DDD >gi|225002543|gb|ACIZ01000036.1| GENE 3 1006 - 1209 335 67 aa, chain + ## HITS:1 COG:no KEGG:OEOE_0352 NR:ns ## KEGG: OEOE_0352 # Name: not_defined # Def: hypothetical protein # Organism: O.oeni # Pathway: not_defined # 1 67 1 67 67 85 92.0 4e-16 MSISDIIMWTFVFIIATGFVTVVSTTVLLKRAKRAPKDTEQSHSDDEDDWKKDDWNHDDW KKGDWKD >gi|225002543|gb|ACIZ01000036.1| GENE 4 1422 - 1691 232 89 aa, chain - ## HITS:1 COG:no KEGG:lp_3438 NR:ns ## KEGG: lp_3438 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 1 89 1 89 89 138 93.0 6e-32 MATTEEYITSKQIQTRLKRSAGQLDGVLRMMDEGRPCDDVLVQLSAVKSSIDKAMKLVIA RNINNCVDNMTSADVQNLEHSLDLLLKTK >gi|225002543|gb|ACIZ01000036.1| GENE 5 1709 - 2029 249 106 aa, chain - ## HITS:1 COG:DR0944 KEGG:ns NR:ns ## COG: DR0944 COG0526 # Protein_GI_number: 15805968 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Deinococcus radiodurans # 4 105 37 136 141 90 42.0 5e-19 MIKEIHDQDFAKETDTGIAVVDFRADWCPPCRMMDPILKSLSEDANYKDKVNFVSLNVDN DKEIASQFQVQGIPTFLIKKDGQVVSHLVGARPKPAFEAELQKALD >gi|225002543|gb|ACIZ01000036.1| GENE 6 2242 - 2580 308 112 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551543|ref|ZP_04440268.1| ## NR: gi|229551543|ref|ZP_04440268.1| PapB protein [Lactobacillus rhamnosus LMS2-1] # 1 112 52 163 163 210 99.0 2e-53 MTNTKSDHAKNQVLDLFTRLQLSLQQHATPERYQYVLNILETGISKVKHNQQTPERQARV VYDQIASQVFVDKLHFTTDENKVLTAINELTHSQKGWGEFSMLGTTNTWPSQ >gi|225002543|gb|ACIZ01000036.1| GENE 7 3091 - 3324 132 77 aa, chain + ## HITS:1 COG:SPy1854 KEGG:ns NR:ns ## COG: SPy1854 COG0580 # Protein_GI_number: 15675676 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Streptococcus pyogenes M1 GAS # 1 77 53 123 315 95 62.0 3e-20 MLLGNGAVANAFLKNTTGNDDPGLANGGWLLVASGYGLGVMLPAMMFGSISGNHLNPAIT IGQATVGLFPWSHVAQY >gi|225002543|gb|ACIZ01000036.1| GENE 8 3381 - 3689 182 102 aa, chain + ## HITS:1 COG:CAC0770 KEGG:ns NR:ns ## COG: CAC0770 COG0580 # Protein_GI_number: 15894057 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Clostridium acetobutylicum # 3 96 145 238 242 100 51.0 5e-22 MVGTAVLIFGAMGLYRGMFFHQNIDIANIGVGLLIAAMVISLGGPTGPALNPARDLGPRL VHALLPVPNKGSSHWEYSWVPVVAPIVGAVIGIWLYKIFFSL >gi|225002543|gb|ACIZ01000036.1| GENE 9 3839 - 5743 1924 634 aa, chain - ## HITS:1 COG:L63697 KEGG:ns NR:ns ## COG: L63697 COG2217 # Protein_GI_number: 15673984 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 614 1 610 625 612 55.0 1e-175 MKIQGFLTKHTNQITLITGILIVLGMLSKYLFQFTLGYQVILAVASVIAVIPIAVRAWSA LRNKVFSIELLVSIAVIGAFIIGEFNESAIVTFLFLFGSYLESKTLQKTRTAIKGLTDMS PTTATLVTADGTEEVDVDDVDEGDVVLVKTGSQVPVDGVVVEGNGYLNEASITGEARQVN KQLNDSVYSGTMVENGYLKIKATQVGDDTTFAKIIELVEEAQDTKSKAEKFIDRFAQYYT PAVLVLAVLVFAFSRDFRLAITVLVLGCPGALVIGAPVSNVAGIGNGAKRGILIKGGEVV DTFAKVDTLVFDKTGTLTEGNTAVTTMHTYTTNADNQLALAAAIEGVSDHPLGQAIVTYA AQKSAGVAPALDDTETVKGQGICAKVGDQTVVIGNQKMLTAHQIELNPAQLKDLNDLQAG GQSTVIMAVDGQVQLIFGIADTIRPGVKDSLAALKAQGIKKLVMLTGDNQLTAQAVADEL NLDEVHANLLPEEKVEYVKKLKADGNTVAFIGDGINDSPSIANADIGIAMGSGTDVAIDT SDVVLMQSSFPALVHAHGLAKKTVLNTRENIFIAIATVAFLLIGLVFGYIYMASGMFVHE ASILVVIFNAMRLINFQTKFDKQQPAKTIQGATA >gi|225002543|gb|ACIZ01000036.1| GENE 10 6418 - 7104 584 228 aa, chain - ## HITS:1 COG:pli0024 KEGG:ns NR:ns ## COG: pli0024 COG3316 # Protein_GI_number: 18450307 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 4 227 3 223 226 234 54.0 8e-62 MTDHFKGRQFNQSVITFTVGYYLRYNISYRDLVEMMRDRGIFVHHTTLMRWVQHYSPIMR ALWRKRHRRTSKSWRMDETYIKIKGQWNYLYRAIDDQGLTLDFQLRKKRDFNSAYHFLKR LLKTYGLPHRLVTDQYGATLKAIKKLTREGYLHKGVHQCSKYRNNLIEQDHRFIKRQQVR SASYQSTRTAARTLYGIETMHAIHKESRKKLGLFGFSAYQEVDQLLAA >gi|225002543|gb|ACIZ01000036.1| GENE 11 7239 - 7460 167 73 aa, chain - ## HITS:1 COG:no KEGG:LVIS_1300 NR:ns ## KEGG: LVIS_1300 # Name: not_defined # Def: IS30 family transposase # Organism: L.brevis # Pathway: not_defined # 2 73 238 309 309 145 98.0 7e-34 AYYCHAYTLAERGSNERFNRNLRYFYPKGTRFEHISAQDLTTTLLQINQRPLKILDWQTP YQVMLTNLSKNSD Prediction of potential genes in microbial genomes Time: Wed May 25 19:37:39 2011 Seq name: gi|225002542|gb|ACIZ01000037.1| Lactobacillus rhamnosus LMS2-1 contig00040, whole genome shotgun sequence Length of sequence - 7062 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 6, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 346 - 405 3.7 1 1 Op 1 8/0.000 + CDS 466 - 1377 536 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 2 1 Op 2 . + CDS 1419 - 2603 845 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 3 1 Op 3 . + CDS 2569 - 3078 395 ## COG1045 Serine acetyltransferase + Term 3138 - 3178 3.7 - Term 3190 - 3216 1.0 4 2 Tu 1 . - CDS 3294 - 4469 926 ## COG3328 Transposase and inactivated derivatives - Prom 4502 - 4561 3.4 5 3 Tu 1 . - CDS 4597 - 4986 282 ## gi|229551553|ref|ZP_04440278.1| hypothetical protein HMPREF0539_0809 - Prom 5048 - 5107 3.0 + Prom 5078 - 5137 3.1 6 4 Tu 1 . + CDS 5184 - 5465 294 ## LCABL_21370 transposase IS3/IS911 family protein + Term 5528 - 5564 -0.9 7 5 Tu 1 . - CDS 5650 - 5889 311 ## LCABL_00320 hypothetical protein - Prom 5909 - 5968 4.5 + Prom 5868 - 5927 2.6 8 6 Tu 1 . + CDS 6068 - 6841 589 ## COG0730 Predicted permeases Predicted protein(s) >gi|225002542|gb|ACIZ01000037.1| GENE 1 466 - 1377 536 303 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 2 302 3 304 308 211 37 2e-54 MLIQSVSQLIGHTPMIDLQINVPHHSHIYAKLEMFNPGGSIKDRLGQYMIQDAIDHGKVT EGKTTIIEPTAGNTGIGVALAAQQHRLPTILVVPEKFSFEKQQLMKALGATLINTPSDQG IKGAIQKARELAAKTPNSFVPMQFENPTNPATYYHTLAPELVADVPVQINAFVAGAGSGG TFAGIARYLKEQNSATRTVVVEPEGSILNGGPAHPHKTEGIGVEFIPPFFKDVQIDETLT ISDNDAFDQVKQMAKTQGLFIGSSSGAALAASLKVANELPENSSIVTVFPDSSERYMSEN IYN >gi|225002542|gb|ACIZ01000037.1| GENE 2 1419 - 2603 845 394 aa, chain + ## HITS:1 COG:HP0106 KEGG:ns NR:ns ## COG: HP0106 COG0626 # Protein_GI_number: 15644736 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Helicobacter pylori 26695 # 1 378 1 379 380 460 58.0 1e-129 MEFDTKLIHGGISEDKYTGATSVPIYMASTFHQQKIGENEYEYSRSGNPTREAVEKLIAD LEDGTAGFAFASGSAAIDTVFSLFSAGDHFVIGNDVYGGTFRLIDAVLKRFGMTFTVVDT RDLQAVKAAITPATKAIYLETPTNPLLRVTDIAAVAKIAKDRGILSIIDNTFSSPYVQRP LDLGVDIVLHSASKYLGGHSDLVAGLVVTKDQALGEKIGYLQNAIGGILAPQESWLLQRG MKTLSLRMRAHLANAEAIFNYLKNQPLVSKIYYPGDPNNPDYEVAQKQMHGFGAMISFEL QAGLDPKQFVEQLQVITLAESLGALESLIEIPALMTHGSIPHDIRLKNGIKDELIRLSVG VEDQKDLLADLERGFDQLKGSHQDVSNSRVHSQA >gi|225002542|gb|ACIZ01000037.1| GENE 3 2569 - 3078 395 169 aa, chain + ## HITS:1 COG:CAC0687 KEGG:ns NR:ns ## COG: CAC0687 COG1045 # Protein_GI_number: 15893975 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Clostridium acetobutylicum # 8 164 12 167 186 154 52.0 1e-37 MFQTAGSILKRDPAAHSLLQVILTYPGVRALFWYRIAHFFASHQRFVIAGLISQHAAKVT GITIAPEATIGKRVFIDHGVGTVIGATAIIEDDVTILHGVTFGTRRMTDKGRRHPHVRKG AFIGANAQILGPIEIGSYSKVGAGAVVLVNVPSHLTVVGNPATIAPHPI >gi|225002542|gb|ACIZ01000037.1| GENE 4 3294 - 4469 926 391 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 390 1 390 391 397 51.0 1e-110 MNELTTEIIAALAQKQDLDEVFRHHLEIAINQLLQTELAEFLGYERYSYAGINTGNNRNG SYERSFDTKYGQLNLTIPRDRNGRFENHTLPAYGRHSDNLETTVIQLYTKGITTAEIAEL TEKMYGAHYSKATVSNMTKAVNEQVQAFQQRRLASQYAAIFLDATYLPLKRETVQKEAVH IAIGIRPDGTKEVLNYQVAPTESTGIWTELLGTLIKQGVKDVLLFVADGLVGLDEGLNRH FPKAKRQRCLVHVGRNLMNKVRVKDRKAVISDFKQVHRAANREAAELKLNEFANNWHQTY PKLIKYLLKMPNLLTFMDFLPAIRQSLYSTNLIENFNKHLKRTTHHKEQFPTEDSLDRFL VSQFNVYNEKSLKRIHRGFKGLQDTLEASFI >gi|225002542|gb|ACIZ01000037.1| GENE 5 4597 - 4986 282 129 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551553|ref|ZP_04440278.1| ## NR: gi|229551553|ref|ZP_04440278.1| hypothetical protein HMPREF0539_0809 [Lactobacillus rhamnosus LMS2-1] # 1 129 1 129 129 239 100.0 4e-62 MNKRQVDLFNYLCGEKDYVPAKVLAQQYNVSSKTIYKDIAVLTDAITGFNVQIKKRPRVG IKVNGHDQAKVKAMATLKDMQQEQPGVIGISPTQRRAAMVKAIILQNKQQTLKELSDHWL VSLFLNYRR >gi|225002542|gb|ACIZ01000037.1| GENE 6 5184 - 5465 294 93 aa, chain + ## HITS:1 COG:no KEGG:LCABL_21370 NR:ns ## KEGG: LCABL_21370 # Name: not_defined # Def: transposase IS3/IS911 family protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 93 1 93 93 145 95.0 4e-34 MTNTAIRYDQDFKKNAVRLSFNSSKPVKIIASELGVPESALYRWRKLYTEDGKQTPFASL EAENRALKRENAELALERDMLKKAAAYFASLQK >gi|225002542|gb|ACIZ01000037.1| GENE 7 5650 - 5889 311 79 aa, chain - ## HITS:1 COG:no KEGG:LCABL_00320 NR:ns ## KEGG: LCABL_00320 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 73 1 73 199 125 91.0 4e-28 MFKNSKSRLDAISDGVFAVVLTLMVLDIKVPKTLTMADLYATGFSVVIYFISFAVVGQYW TFHQELLLLCNKPQMRLGP >gi|225002542|gb|ACIZ01000037.1| GENE 8 6068 - 6841 589 257 aa, chain + ## HITS:1 COG:RSp1268 KEGG:ns NR:ns ## COG: RSp1268 COG0730 # Protein_GI_number: 17549487 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Ralstonia solanacearum # 8 256 7 249 252 84 32.0 1e-16 MNFSIFAFLLIAGIGAGLTSTLAGLASLVSYPALLAIGVPPVIANVTNTAALVFTGVGSA VSSLPELRGRGKFLWRLVLLVSLGSIFGSALLLIAPAATFEKVVPFLIIAAGLLLLFSGR LPTQEHRPGEPARTLTFGQEAAQTIVIFVTGAYAGYFGASAGVVMLATLTLTVDQPFIVS NSMKNLTGFAANAIATVIYAFTTKIEWLMVIPLGIGLFIGGYIGPIIARRLPVQLLRFII AALTFLLAAKLFAQAYL Prediction of potential genes in microbial genomes Time: Wed May 25 19:37:51 2011 Seq name: gi|225002541|gb|ACIZ01000038.1| Lactobacillus rhamnosus LMS2-1 contig00041, whole genome shotgun sequence Length of sequence - 7524 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 2, operones - 1 average op.length - 8.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 78 - 113 -0.8 1 1 Op 1 3/0.000 - CDS 303 - 950 716 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 2 1 Op 2 6/0.000 - CDS 966 - 1880 903 ## COG3817 Predicted membrane protein 3 1 Op 3 . - CDS 1883 - 2560 598 ## COG3819 Predicted membrane protein 4 1 Op 4 . - CDS 2599 - 3495 561 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 5 1 Op 5 . - CDS 3499 - 4242 398 ## COG2362 D-aminopeptidase 6 1 Op 6 . - CDS 4197 - 4352 165 ## LCABL_21450 D-aminopeptidase (EC:3.4.11.-) 7 1 Op 7 . - CDS 4355 - 5440 414 ## COG1363 Cellulase M and related proteins 8 1 Op 8 . - CDS 5469 - 7088 1011 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 7146 - 7205 5.3 + Prom 7136 - 7195 6.6 9 2 Tu 1 . + CDS 7325 - 7468 74 ## gi|229551567|ref|ZP_04440292.1| hypothetical protein HMPREF0539_0823 Predicted protein(s) >gi|225002541|gb|ACIZ01000038.1| GENE 1 303 - 950 716 215 aa, chain - ## HITS:1 COG:SPy0506 KEGG:ns NR:ns ## COG: SPy0506 COG2039 # Protein_GI_number: 15674611 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 215 215 248 59.0 7e-66 MKILVTGFDPFGDDKINPAIEAVKRLPDEIAGAQIVKLEIPTKFNVSADVVKDAIAKEKP DYVLSIGQAGGRFELTPERVAINLDDGRIQDNAGYQPLNHTIHGDGENAYFTQLPIKAMA KAIREAGVPAAVSNTAGTYVCNHIFYQVQYMRDKMFPDIKAGFMHIPFLPEQVVTRPETP ALSLDDDVLGITAAIKAIVARDGKGDIETIEGKNH >gi|225002541|gb|ACIZ01000038.1| GENE 2 966 - 1880 903 304 aa, chain - ## HITS:1 COG:SP0859 KEGG:ns NR:ns ## COG: SP0859 COG3817 # Protein_GI_number: 15900743 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 304 4 307 307 233 44.0 2e-61 MVNTLLLILYALIGVVMAIAGIEAFRAKDNPARIGTGLFWEIMAVIFAFGTLMPAMVVGV LVVIIGILALFKQIQIGKIKPVDGAHAATAAKRLGGWVFVPSVVLAVVSIGVAQFTKLGG QVGIGIGAAVSLIVAIIMTKAPGKMVYNDTQRMVRSVGAAGILPQLLATLGAVFTAAGVG SLTAKLIAGLFPTGSHLGGVILYCVAMALFTIIMGNAFAAFAVITAAVGIPFVIAQGANP AIVAAIGMTSGYCGTLLTPMAANFNSLPVALLEMKDPLGVIKQQAPIAILLLIIQIGLMY FLAF >gi|225002541|gb|ACIZ01000038.1| GENE 3 1883 - 2560 598 225 aa, chain - ## HITS:1 COG:SP0858 KEGG:ns NR:ns ## COG: SP0858 COG3819 # Protein_GI_number: 15900742 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 225 1 227 229 202 48.0 3e-52 MEYLKLLGIVIIVVGFALKWDTTAVVVLAAVVTAVCSGMSIPALLTTLGQSFVDNRMVSL FFLTLPMIGLVESHGLKEVAVNGIQKLKKLTPSRILNIYLVIRELGGVFGISLSGQVQFV RPLITPMVTAAAETKRKLTDKDIDLIKARSAATDNFGNFFAQNLFVATAGVLLIASTMKS LNHPVEPMQVVLASIPVALITLVIVAIYNRWFDRQFEQQSHKGGK >gi|225002541|gb|ACIZ01000038.1| GENE 4 2599 - 3495 561 298 aa, chain - ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 13 297 16 293 296 155 33.0 1e-37 MVIATTKILTLANGYHLWSQKQGKGTTQLLCLHGGPGSDHEIFEEFGNHLADQDISVYMY DQLGSWYSDMPDFSVSKNRNKFFKIDYYVDEIEEVRQLLGLDNFFLLGHSWGGILAQEYA LKYGDSKGFRGLIISDMTDDIASYERNIDHERKDLLGSDEVVFMKQCENKGAYTNDRYHR DILKLNTAYIIKHPEHSSKHLIGTKNRALYEYFQGDNEFIVTGALHDWTVADQLYQIKQP TLIIFGSDDTMDKDEGQKMSKRLPNGEFHIINNAGHCSMLDNPKEYFSVLTKFVKRNS >gi|225002541|gb|ACIZ01000038.1| GENE 5 3499 - 4242 398 247 aa, chain - ## HITS:1 COG:PAB1969 KEGG:ns NR:ns ## COG: PAB1969 COG2362 # Protein_GI_number: 14520796 # Func_class: E Amino acid transport and metabolism # Function: D-aminopeptidase # Organism: Pyrococcus abyssi # 17 225 53 256 278 103 32.0 3e-22 MGLARYPTIKKNVEVTDILIADSHAKGLNLSYNRLSDCDERVSLISGWPREDYMMSKLDS SFDQIFFVGYHSGIGKEHGNMDHGYSARSAYKIWINGEYQNETTINAAYASEVGVPVTLI IGDSGLRQQLRDEKMFPAPFFVETKQSLARYAALSYPRKQIRENTYQAVKQALEEPIPKP QKSYKMPATLRMQVYNTAQADAIEQMPNVKRIDGRTIETSMSDMKTLMNGILAMVAIGGT QGRFKGA >gi|225002541|gb|ACIZ01000038.1| GENE 6 4197 - 4352 165 51 aa, chain - ## HITS:1 COG:no KEGG:LCABL_21450 NR:ns ## KEGG: LCABL_21450 # Name: dppA # Def: D-aminopeptidase (EC:3.4.11.-) # Organism: L.casei_BL23 # Pathway: ABC transporters [PATH:lcb02010] # 1 48 1 48 284 93 95.0 2e-18 MKIYISTDIEGLAGIVDFSQEDEDREIFRDLYNQQIEWVLQGIQQSKKMLK >gi|225002541|gb|ACIZ01000038.1| GENE 7 4355 - 5440 414 361 aa, chain - ## HITS:1 COG:BS_ysdC KEGG:ns NR:ns ## COG: BS_ysdC COG1363 # Protein_GI_number: 16079934 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Bacillus subtilis # 5 358 6 359 361 183 32.0 4e-46 MEDTKQIQLIKDFSDAHGVPGQEQEVVALYKDRMKGLGTTTIDGMFNALTALNGNTGKKP VIQLDAHSDSCGFLVQAIRPNGLIKFVPLGGWVPTNIPAMRVVIRNKLGEYVSGVVATKP PHFMTEEERHAVPKIADMSIDVGTTSRDETINDFHIDTNCPIFPDVKCEYHPQNGFFFGK DFDNRVGAAALIEVFDQLQNADLNVDVVASLSAQEEVGLRGAYVTARKINPDISIVFEGC PADDTFEPEWLSQTHIKGGPMLRDMDTSFIANPAFEQYAADTADQNKIPYTRAVRTGGGV DGAAIAYWKGIPTIVVGIPVRYEHTAYNWTTLIDFQRSTRLVATLIQQLDEQQINQFTEV N >gi|225002541|gb|ACIZ01000038.1| GENE 8 5469 - 7088 1011 539 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 36 537 48 556 559 350 39.0 4e-96 MIKKTKLPGLVTAMCSVTLLLGACGKQSAPETHDSINIGASAALSTADNSQAMDNTSSDV MEQVSEGLYDFTVKGTLKEALATNMPKATNGGKTYTFNLRHDAKWSNGDPVTAQDFVYSW RRTVDPKTKSPQAYYFDGVKNYSEITARKKSPNTLGIQAVGKYKLVVTLDHAMPYFPSVL AVNASFPLNQKYVEKEGKKYGTDSSHTLYNGAYTLTNWNGSSDSWTYSKNKYYWDKKNVK IKTVNVTVMKSQTTAGLEFKSGKLDLTPISGDEVKNEKNNKSLFVRKIPGTMYLQYNTKQ KLFSNEKIRQALTYATNSKELASDVLQDNSSTATGYVPTGFTNSKTGQDFAKQAGVIVKF DKTKAKQLWQEGLKELGMTKASFTLMSSDDDSTKKVDEYLQGQYEKALPNLTINIKAVPF NSRLSASESGYFDAVLGGWTPVYADPTDFLNLFVTGNSNNFGSYTNAQYDKDIHDANVTN AQNVSKRWSNLQDANKIVTKTAAMTPLYFLSENYLISSHLKGLMMGPLGQPYFKDVYWK >gi|225002541|gb|ACIZ01000038.1| GENE 9 7325 - 7468 74 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551567|ref|ZP_04440292.1| ## NR: gi|229551567|ref|ZP_04440292.1| hypothetical protein HMPREF0539_0823 [Lactobacillus rhamnosus LMS2-1] # 1 47 1 47 47 65 100.0 1e-09 MLKKPDEFLNLLQKNYISLGTHLAVETLFTSLKNKALKKLNILQDLI Prediction of potential genes in microbial genomes Time: Wed May 25 19:38:06 2011 Seq name: gi|225002540|gb|ACIZ01000039.1| Lactobacillus rhamnosus LMS2-1 contig00042, whole genome shotgun sequence Length of sequence - 36037 bp Number of predicted genes - 34, with homology - 34 Number of transcription units - 16, operones - 9 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 334 - 393 4.5 1 1 Tu 1 . + CDS 482 - 1480 256 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase + Term 1599 - 1660 9.1 - Term 1587 - 1646 4.9 2 2 Op 1 . - CDS 1652 - 2575 721 ## SAV0399 hypothetical protein 3 2 Op 2 . - CDS 2572 - 3105 492 ## gi|229551571|ref|ZP_04440296.1| hypothetical protein HMPREF0539_0827 4 2 Op 3 . - CDS 3115 - 4110 904 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 5 2 Op 4 . - CDS 4107 - 6200 1165 ## EF1877 hypothetical protein 6 2 Op 5 . - CDS 6187 - 8652 1890 ## lmo1106 hypothetical protein 7 2 Op 6 . - CDS 8636 - 9028 275 ## CD3339 conjugative transposon membrane protein - Term 9045 - 9082 5.2 8 3 Op 1 . - CDS 9090 - 9587 541 ## smi_1327 hypothetical protein 9 3 Op 2 . - CDS 9591 - 9812 240 ## SPG_1238 Tn5251 hypothetical protein 10 3 Op 3 . - CDS 9911 - 10645 557 ## COG0863 DNA modification methylase 11 4 Op 1 . - CDS 10776 - 11102 214 ## gi|229551579|ref|ZP_04440304.1| hypothetical protein HMPREF0539_0835 12 4 Op 2 . - CDS 11092 - 12282 703 ## COG2946 Putative phage replication protein RstA 13 5 Tu 1 . + CDS 12657 - 15227 602 ## JDM1_2524 hypothetical protein 14 6 Op 1 . - CDS 15196 - 15456 228 ## gi|229551582|ref|ZP_04440307.1| hypothetical protein HMPREF0539_0838 15 6 Op 2 . - CDS 15453 - 15728 224 ## gi|229551583|ref|ZP_04440308.1| hypothetical protein HMPREF0539_0839 16 6 Op 3 . - CDS 15718 - 17106 1162 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 17 6 Op 4 . - CDS 17103 - 17390 160 ## gi|229551585|ref|ZP_04440310.1| hypothetical protein HMPREF0539_0841 - Term 17721 - 17762 4.1 18 7 Op 1 2/0.000 - CDS 17790 - 20123 1251 ## COG1404 Subtilisin-like serine proteases 19 7 Op 2 . - CDS 20113 - 21219 551 ## COG0464 ATPases of the AAA+ class - Prom 21275 - 21334 4.6 20 8 Tu 1 . - CDS 21395 - 21625 314 ## gi|229551589|ref|ZP_04440314.1| hypothetical protein HMPREF0539_0845 - Term 21647 - 21676 1.5 21 9 Op 1 . - CDS 21700 - 22071 458 ## CD3345 hypothetical protein 22 9 Op 2 . - CDS 22089 - 22412 367 ## CA_C1439 hypothetical protein 23 9 Op 3 . - CDS 22455 - 22697 206 ## gi|229551592|ref|ZP_04440317.1| hypothetical protein HMPREF0539_0848 24 9 Op 4 . - CDS 22699 - 26511 3185 ## COG4932 Predicted outer membrane protein - Prom 26537 - 26596 2.4 - Term 27222 - 27259 3.2 25 10 Tu 1 . - CDS 27272 - 27700 483 ## LGG_02543 hypothetical protein - Prom 27739 - 27798 4.2 + Prom 27868 - 27927 1.9 26 11 Tu 1 . + CDS 27956 - 28630 587 ## LC705_02547 integral membrane protein 27 12 Tu 1 . - CDS 28646 - 29287 540 ## LC705_02546 hypothetical protein - Prom 29413 - 29472 3.7 + Prom 29407 - 29466 5.7 28 13 Tu 1 . + CDS 29489 - 30253 499 ## LC705_02545 hypothetical protein + Term 30255 - 30294 5.1 + Prom 30291 - 30350 2.4 29 14 Op 1 2/0.000 + CDS 30400 - 31788 1174 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase + Term 31917 - 31960 1.4 + Prom 31900 - 31959 5.3 30 14 Op 2 . + CDS 32062 - 33570 1572 ## COG0513 Superfamily II DNA and RNA helicases + Term 33631 - 33674 -0.2 + Prom 33656 - 33715 4.1 31 15 Op 1 5/0.000 + CDS 33739 - 34113 388 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 32 15 Op 2 . + CDS 34100 - 35239 848 ## COG0787 Alanine racemase + Prom 35263 - 35322 4.2 33 16 Op 1 . + CDS 35351 - 35599 266 ## LGG_02535 hypothetical protein 34 16 Op 2 . + CDS 35619 - 36002 218 ## COG2337 Growth inhibitor Predicted protein(s) >gi|225002540|gb|ACIZ01000039.1| GENE 1 482 - 1480 256 332 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 6 326 11 316 317 103 28 2e-21 MSPYTHLTLKDRESILLGISTGKTLDTIAKEIGRSKSTVSREIARNGGWRNYSAATAQYR YRRVRLASRRPRILDRPGTRDAVIRYITVLHWSPEQIAGRLSLEGSPIRISYSTIYRGIY LDNLGVPLKSHGARGLPRLLRHRGKTHKIKGTINERRGRFNDVPSIHDRPRSAENRSWFG HWEGDTVRGKTGHSALVTLVDRKSRYLLSKRTANAKADTVRDVMIELLGALPANRVRTVT PDRGREFARYRELAERLNTKVFFPDPHAPQQRGTNENTNGLIREYFPKNTDLDLQSDQEI ETYIEQLNNRPRKVLGWKTPSEVFMGKKLHLS >gi|225002540|gb|ACIZ01000039.1| GENE 2 1652 - 2575 721 307 aa, chain - ## HITS:1 COG:no KEGG:SAV0399 NR:ns ## KEGG: SAV0399 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 28 303 43 318 320 233 43.0 9e-60 MNKDQNQKKGWFKKQPAVPKPPKIRHRGLRRPVTLLCWAVLIGSTSFGVYKNMTAIDTHT VHEVQVIKTKVIDTHALATFTTDFAKLYYSWQPSHEALDQRQKALQPYLVEQLQSLNADT VRSDISTTATVSEVKVWDVSKTVKDTFRVLFTVKQDLTKGKDKKSVTSTYTINVMQNDNG DMVVTKNPTVAAEPATARIKLPDTQSDNTVASSTADDVTKFLKTFFALYPKSDRNELKYY VKNGTRPIERNLKFVELLDPVFKKTKNSLTVTLSVKYLDTDNDMSQVSQYTLTLSKQSNN WFITDGI >gi|225002540|gb|ACIZ01000039.1| GENE 3 2572 - 3105 492 177 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551571|ref|ZP_04440296.1| ## NR: gi|229551571|ref|ZP_04440296.1| hypothetical protein HMPREF0539_0827 [Lactobacillus rhamnosus LMS2-1] # 1 177 4 180 180 320 100.0 3e-86 MDQNGIGYFDWMDLITNTYDDALQKAHVDLKFGDNRALRNKELDFASSEWERIKFFKQRL PNTDDLCHVLDRFVDRMPEMEYGHRREYRLAVAHEVAVDRWLKGKVFAPEDRKYILDRER YLAEEYFNNDRELGQYIETDYEGYKRISLQRLFVRFLDIYDDFYRCYEKRKDKVNKP >gi|225002540|gb|ACIZ01000039.1| GENE 4 3115 - 4110 904 331 aa, chain - ## HITS:1 COG:BS_yddH_2 KEGG:ns NR:ns ## COG: BS_yddH_2 COG0791 # Protein_GI_number: 16077564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 211 330 5 124 124 132 54.0 6e-31 MKLWRWLALAALPILLIGGLFFAVIASDDDEDQPASAITADAMNLSAEVYKHKLTVEKYC KEFGIPDQVMVILAIMQVESGGKGGDVMQASESLGLPVNTLDTEASIKQGVKYFASLLKS MKAAGVDLNTAIQSYNYGGGFIDYVAKHGKKYTLELATAFAKEKSGGKKVTYTNAVAKDG WRYAYGNMYYVSVISQYLVTGGAKFDDKTVQAIMDEALKYQGTRYVFGGSTPTTGFDCSG LTSWCYSKAGIKLPRTAQAQYDATAHLNIKAAKPGDLVFFHSTYDTADYVTHVGIYVGGM KMYNAGDPLGYADLNSSYWQAHLIGAGRVKK >gi|225002540|gb|ACIZ01000039.1| GENE 5 4107 - 6200 1165 697 aa, chain - ## HITS:1 COG:no KEGG:EF1877 NR:ns ## KEGG: EF1877 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 6 696 2 702 707 597 46.0 1e-169 MTKANRRRLLLFLGVVAVFILVLVFTGGQPVHAAGLVDDQSGGTNEYSKYPLSHYQLDYF VDTSWDWLPWNWGDGIGKSVNYGLYAITNFLWTLSVYLSNAAGYLIQQAYSLDFIKDTSD AIGKNMQLLAGVSKDGFTTEGFYPGLLLMITLVVGIYVAYTGIIKRETSKAISAIVNFVV IFITSASFIAYAPDYVSKINEFSSDISTSALNTGSKMIMGTDTATDKSGVDAIRDTLFEI QVKQPWTLLQFGDSDTDTVGKERVNKLIKTNPFGDKGKTRTDVVKAEIEDNDNENLSPTM TINRLGTTTFVVLFNIAITLFVFFLTAIMLFSQILFIIYATFLPVSFLLAMLPSFNGLMK QNIMKLFNTIMTRVGVTLVITMAFSLSAMVYGLSATSPFFLVAFLQVTIFAGIWMKLGDL MGMMQLHSSDAQQGAQRLSRRGNRMLRQFVGSAMGGAMAGRFLSRGYGKGRGTPQLPTGT QREQNADATKPQQPKKPRSQRLGEKLADVSDVGNKLKDKTERGLDQVKDAPTNVLYGLHR GKQLTKEAAETAKDSFKGRREANQQERDKQLEQRRKQMQERKLAIKPKADPEKPKPTATK PPVEPTRKPTTATPPKPKPEQADTSGQPKRAATKPTSTRPPRPATKPQAEPTITPHQELT PSTDRPKNPLTLVSEKPAKPRNPKPQRIKKAKGHKKR >gi|225002540|gb|ACIZ01000039.1| GENE 6 6187 - 8652 1890 821 aa, chain - ## HITS:1 COG:no KEGG:lmo1106 NR:ns ## KEGG: lmo1106 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes # Pathway: not_defined # 1 815 1 815 816 1131 67.0 0 MKFPIKYIEDNLVWNTDGECFAYFELVPYNYSFLSPEQKQQVHENFRQLISQNRDGKLHL LQLATEASVRDTLDRSKKLVKGSLKDIAFQHIDGQAQALTENVGDNQVDYRFFIGFKLLL NDAEVTAKSIFKDMSLGIRDFFAEFNTTFAGDFFTMNNAEAERYAKSAKFLAEKIGRRFK VRPLDKNDFGYLLEHLYGMTGQDYDDYEYHLPRKKSKRDTIIKRYDLIKPTRSLIEQHQR SIKITHGLNASYVTYLTLSDIVGELEFPGSEIFYFQQSQFDFPIDTSLNVEIVTNKKALT KVRNKKKELKDLDEHAYQSGNETTRGVSDALDSVDELESNLDQTKDAMYKISYVIRVAGR SEDEMKRRADQLLDFYDSLNIKLVRPFGDMLGLHGEFIPASKRYINDYIQYVTSDFIASL GFGATQSLGEKEGIYIGYNVDTGRNVYLQPDIAAQGIKGTVTNALSASFLGSLGGGKSFS NNLLVYYAVLYGAQALILDPKSERTGWAENLDFMGDEINIVNLTSEEQNRGLLDPYIILS NLKDSESLAVDTLTFLTGISSRDADRFPTLRKAIRAVTQAPEPGLLKVIDELRREDTPIA RNIADHIESFTDYDFAALLFSDGTARRTIALDRKINIVQIADLVLPDADKMQEEYITAEM LSVAMLMIISTFAIDFIHQDRAQFKIVDLDEAWAFLNVAQGKALSMKLIREGRSMNAGVY LVTQNADDLLDEKMKNNIAQKFAFRSTDITEIKNTLNFFGLDAEDEGNQNRLRSLDNGEC LFQDIWGHIGVLHFDYIFEHLHHAFDTRPPKPVEVIADDES >gi|225002540|gb|ACIZ01000039.1| GENE 7 8636 - 9028 275 130 aa, chain - ## HITS:1 COG:no KEGG:CD3339 NR:ns ## KEGG: CD3339 # Name: not_defined # Def: conjugative transposon membrane protein # Organism: C.difficile # Pathway: not_defined # 1 121 1 121 130 176 74.0 3e-43 MKKVRSYTSIWSVEKVLYAINDLQLPFPITFTQMTWFIVSLFAVMLLGDLPPLSFIDGAF LKYVGLPAGLTWFMSKKTFDNKKPMGFLRSVINYAITPKLTYAGKPVKSQKEKQDTAVTY VWRYHNEISN >gi|225002540|gb|ACIZ01000039.1| GENE 8 9090 - 9587 541 165 aa, chain - ## HITS:1 COG:no KEGG:smi_1327 NR:ns ## KEGG: smi_1327 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 3 162 2 163 166 149 46.0 3e-35 MDDIKVFIANLGKYNEGEIVGAWFTPPINNEELTEKLGLNDQYEEYMVQDYEGPVVFSEY STIGEINEAAAAIEALKGTEIYPAIKELIGEWYDNVIELAAHKDDIACYHVANMTELAEE LADEGWFGDIPPQVENYIDYAKVGRDLEIEGGFVETPYGIYQLLD >gi|225002540|gb|ACIZ01000039.1| GENE 9 9591 - 9812 240 73 aa, chain - ## HITS:1 COG:no KEGG:SPG_1238 NR:ns ## KEGG: SPG_1238 # Name: not_defined # Def: Tn5251 hypothetical protein # Organism: S.pneumoniae_G54 # Pathway: not_defined # 1 73 1 73 73 96 84.0 2e-19 MNFGQNLFNWFTSNAQSLVLMAIAIIGVYLGFKREFSKLIGFLIIAIIAVGLVFNTAGVK DVLLNLFNRVMGA >gi|225002540|gb|ACIZ01000039.1| GENE 10 9911 - 10645 557 244 aa, chain - ## HITS:1 COG:ECs4134 KEGG:ns NR:ns ## COG: ECs4134 COG0863 # Protein_GI_number: 15833388 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Escherichia coli O157:H7 # 1 243 28 269 296 76 28.0 4e-14 MADLPTASIDMILCDLPYGTTANAWDKVIPFEYLWGQYERLIKPQGTIVLTATERFSADL VQSNPALYRYKWVWIKNTVTNFVNAKNRPLSRFEEILVFSKSGTANFGNSPDTKGMNYFP QGLLPYNKTVNSRKYERANQLHPWNAPDSYTQEWTNYPADVLSYKSERTGWHPTQKPVDL FAYLIKTYTQPGEIVLDNCMGSGTTAIAAMDTNRHFIGYELSEEYWRRANDRIKQHHATQ TELF >gi|225002540|gb|ACIZ01000039.1| GENE 11 10776 - 11102 214 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551579|ref|ZP_04440304.1| ## NR: gi|229551579|ref|ZP_04440304.1| hypothetical protein HMPREF0539_0835 [Lactobacillus rhamnosus LMS2-1] # 1 108 1 108 108 231 100.0 1e-59 MVNDVLASHPLRGKAFKDCVLNVYVYETALVGVVEHKKYRRICDMNSFGFTAQDYIAWRH QQQEHPAALIGRDGRALNYGELRRLLYQTAEESGWPVFTSPVEDLFFD >gi|225002540|gb|ACIZ01000039.1| GENE 12 11092 - 12282 703 396 aa, chain - ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 56 380 20 341 352 237 40.0 4e-62 MNSWHEQVKLHRKQLRLTQAQVARRLGVTRMHYVQVENGKTNPSPALQMEIDRLLKNWND EPELTLMFDYMRVRFPTHDAKAVITKILGLTPKHLIFEEHGFYGYSAMYIFSNIQVMVAP VGSNLGTLVEMKGQGCREFEGILLSHGENWYDYFLRVDEAGGIFKRVDIAINDMVGLLSI PELVDKCLNNECISVMRSFQGLQSGKLVDLDEAGRGNTLYVGKMKSDVYFCIYEKAAEQA AKRGISIADTPITNRFEIRLKNERAIKAIENMLITRDAEKVAFGIITRYMRFVDEVSDKS RLKWPLNERWAYFLGKGRQPIRLTTDPQPFDLNKTKAWLQKQVMPTLKVIKEIDNYFGTT DLQLMIKDAELTDKHLKLIEQQTVGSEELGGDMFGQ >gi|225002540|gb|ACIZ01000039.1| GENE 13 12657 - 15227 602 856 aa, chain + ## HITS:1 COG:no KEGG:JDM1_2524 NR:ns ## KEGG: JDM1_2524 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 1 658 1 655 658 546 43.0 1e-153 MPFREKELFRRTASSELNQALTRIEQLKQVYGEYQKTLIHFHTPASHDYKFVRAPKYLRE NESVRLFTSYDQSEVDQIATDFDLFKFARITHEYLDKMVEKNSLFETVKELEGYLLIALK LYLESVRVAVITDHNTVAGYDRLKDAINIIKRCLPNKQVPSLLFGVEISCGDSLHVVGIT DNSSKSRSLVTEFLTTNILSENAGTYLPSWEVVEWFKKHGFISYVAHINTSDVFKLEYGS GAYKKRLFSAENMQVVGVSKIEKQQGVLRQLRNHNVTCPVVFLDEDSHCLEDLATKTFWI KGQELDYNMLRNAIEDSDVSLKFDRPELPDVFIKSVSIDGDGFLGKSDSPFSVSFSTALN CVIGGRGTGKSTLLDCVSFVLSQHVRDLTQLKNICKQGKILLTLSVEGKIYYVAFNPAMD GVRDDAFMRGYLFGQEHQLQYHDRMEDTFDEEKVTKATRDKIQIFSLHDDAIYEVIEKTK FFNRVFRSSYSVNELVKKASDRHITSFIESQLNSTSMKVSKIRAMSIENDQELRKQAGLV NKKLESHKSKILTKIQRINVESKRVRVTYTQKALSSQYFDWFRQTDRDWFKAPKRWFLNY NIDADGLMDLFEKGSDEFGVIGLYLLFRSEDFEKLRPLLLSYTAEISTRDIDNSVEKITV ENVDHLLRKIKDKIVRPSRFSVYDLLNQYYRNVDQFDLQFDINSFENDSQMTVFKSISEI SLGQKVVALLDFIFMFGAVSGDVTPLLLDQPEDNLDSTYIYQHLVEALRKQKDHRQVLIV THNSTIVTNSKPEQVISLQSDNTHGWVENTGYPTEAEIVLQIVNLLEGGVASFKHKEFVY SPIIGNISNGAPSHDK >gi|225002540|gb|ACIZ01000039.1| GENE 14 15196 - 15456 228 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551582|ref|ZP_04440307.1| ## NR: gi|229551582|ref|ZP_04440307.1| hypothetical protein HMPREF0539_0838 [Lactobacillus rhamnosus LMS2-1] # 1 86 1 86 86 166 100.0 5e-40 MITPQFRNKMQFTEDYANTIKAGTEGDAEDALMELCDYIEPWEDDDHWLELTADRTVSGK PVYFWFTADISGNGMVLTYHDWAHHY >gi|225002540|gb|ACIZ01000039.1| GENE 15 15453 - 15728 224 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551583|ref|ZP_04440308.1| ## NR: gi|229551583|ref|ZP_04440308.1| hypothetical protein HMPREF0539_0839 [Lactobacillus rhamnosus LMS2-1] # 1 91 1 91 91 166 100.0 3e-40 MSTDVKIENRTQFLNDFHENVPFQSDEDAEDQLEWMAMHAREYPDSRIWMGAPGGLTADR FPKRFWFNITTDDDGGLTMTYTNVADEGDEE >gi|225002540|gb|ACIZ01000039.1| GENE 16 15718 - 17106 1162 462 aa, chain - ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 5 445 12 448 480 411 48.0 1e-114 MKLVYRGTRVYPRQRNLLYNTAMTVVVGLWVTGAAIAYWPLLKQINCKLFSWLDVVALAW SWLPLIINSLCTALLFGVGLWAYRTWFADSYKKLEHRQKLARMIMENKWYQTDQSNNESF FKDLGSTRTKEKISHFPKIYYRLKDGLIHVSVEIVMSSYQDQLLHLEKKLEAGLYCELVD KILHDSYVEYTLLYDTIGKRITIADVTCEHGSMQLMETVAWHYDALPHMLIAGGTGGGKT YFILTLIEALLKDGAQLTILDPKNADLADLADVMPGVYSKKEAMLGAVETFYQEMMRRND EMKQMPGYKTGKNYAYLGLPAHFLIFDEYVAFMDALGRDAMQAMSKLKQIVMLGRQAGFF LVLACQRPDAKYLGDGIRDQFMFRVALGRMSELGYSMMFGETNKDFFQKPIKGRGYVDTG GSVISEFYTPLVPRGYDFLTEIGAAANTVPATPTEQEMPNEH >gi|225002540|gb|ACIZ01000039.1| GENE 17 17103 - 17390 160 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551585|ref|ZP_04440310.1| ## NR: gi|229551585|ref|ZP_04440310.1| hypothetical protein HMPREF0539_0841 [Lactobacillus rhamnosus LMS2-1] # 1 95 1 95 95 188 100.0 1e-46 MNDQVTLIGLNNFLGTYDLNADFTGGAPEPGEVLLGLIDSAADSVEHGMNTCCLILQRNQ CENEVAFPHGARFEFNIERSALGLVIGYDRMVENL >gi|225002540|gb|ACIZ01000039.1| GENE 18 17790 - 20123 1251 777 aa, chain - ## HITS:1 COG:FN2100 KEGG:ns NR:ns ## COG: FN2100 COG1404 # Protein_GI_number: 19705390 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Fusobacterium nucleatum # 253 622 23 373 416 151 29.0 6e-36 MDNEQNPLINFTPRAQDNGETIGGGGGEDTTKWLLSGAELVERSTQLVADIDRVSAEWDS VSVEGLPHVLKATSIEKAQAKTHQVQIVSMFTVGENTGQVGFIGEHSLMLKIDSKAKLET IRANFSDYDKNVHSISALTNIELFKPQVTESDNQSDYKLIPLTYGDPATDQLAIQVIQRR LSDQHISNELIAYTDSLRIIKIPTITPDSLKFIRTLPIRAVEPIEKVALPFRFLNNLSTD DFPIQDFDPKVKYPLIGLLDSGVSTNPLTQGWVTRGDGVSYSDDELDTSHGTYIATLLIH GETFANIDDASIKGCRIVDVPIIPKLGANETQLIQNIRRAIQANPNVRIWNLSVSLTSEI SSSEFSVFASALDQIQHANNVLICKSAGNDPTFMDHKSAGKLSTGAESIRAITVGSMNRN ADQFGYALENHPALYSRHGPAPASVVKPDVTHFGGDLFATKTDATTLADFEQVSDTASTD GKHLTHMVGTSFSAPKVAKNLAEIDLLTTEKYTLLTLKALEIHSASYLETPALDPETRLA FLGYGKPANASKTIFSSSYSSTLILQGKLQKGQHIDIMDFPYPKALIKDGHYTGRIKITL VYDPILMQNQGAEYCQSNLEVKFGTYDEKRDTVDYLSHFNPVKRVGSFNTLLESQYGKKQ IAKNPEYAGERTLIQYGQKYHPVKKYAFDLSEITPGKFNNVSGDRHWFLFLEGHYRDYAE KDALRHQEVLSIPYSLIITIEDPDEQAQVYDSTVQELDANNFIHSNVSVDNSIHLSN >gi|225002540|gb|ACIZ01000039.1| GENE 19 20113 - 21219 551 368 aa, chain - ## HITS:1 COG:AF0477 KEGG:ns NR:ns ## COG: AF0477 COG0464 # Protein_GI_number: 11498088 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Archaeoglobus fulgidus # 78 314 160 393 409 141 38.0 2e-33 MYSELLKIIEGGLKNDPQKVRNYSIKLAKYLNDNGEKTVSRKVSQLIEKSTTRTAQLDSL TAKPFDNETRVETVDVSIPTETSEELFFNEFIEQEVNEFLQSYEKRDLLLRKGIETNNRL LLYGKPGTGKTSLARFISLQTGLPLVTARLDGVVSSLLGSTAKNIRKVFEYASKQPCILF LDEFDVLAKVRDDQHELGELKRVVNSLIQNIDSFAPESILIAATNHPQLLDSAVWRRFDM KLELELPESTVREKLINYFSKIMDTDFSNDPKRIQQLVVSTKNLSPDAIKAIFNTTAKNC LLQGKDRLLYSQLILELFIYLTPTDFSEENASKFMIDNLVPQSEISDRLSLSMRKVRSIY KEVKANGQ >gi|225002540|gb|ACIZ01000039.1| GENE 20 21395 - 21625 314 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551589|ref|ZP_04440314.1| ## NR: gi|229551589|ref|ZP_04440314.1| hypothetical protein HMPREF0539_0845 [Lactobacillus rhamnosus LMS2-1] # 1 76 1 76 76 110 100.0 3e-23 MMTSTLTVVGREVFIDDYNEEIDNDYRLDPDEILQDMVELMEESPESYQHLHIDSEQTND GMNKLFSFTSYEGEED >gi|225002540|gb|ACIZ01000039.1| GENE 21 21700 - 22071 458 123 aa, chain - ## HITS:1 COG:no KEGG:CD3345 NR:ns ## KEGG: CD3345 # Name: not_defined # Def: hypothetical protein # Organism: C.difficile # Pathway: not_defined # 1 120 1 120 125 123 54.0 2e-27 MRLAEGIVIDLEETFGVLKFSGQRRERFVQDEDGNRTDDVKERTYDLKSMKQGMMIQVSI PAEAGIKDFKYNQIVTLVDPVIDTVANANFNRVETSWYMKAKDLVIATAPVKPQEKPNNN DKK >gi|225002540|gb|ACIZ01000039.1| GENE 22 22089 - 22412 367 107 aa, chain - ## HITS:1 COG:no KEGG:CA_C1439 NR:ns ## KEGG: CA_C1439 # Name: not_defined # Def: hypothetical protein # Organism: C.acetobutylicum # Pathway: not_defined # 1 104 1 102 104 89 44.0 4e-17 MELKFVAPNIEKTFGHLYFGSLKRELSEGDRDNRKVVSRTYELFSDLQRTDNIEITIPAK KGDKAESIEVDAPVTIIKPRIATVGYRIGEQAFVRYICNADDIVPVK >gi|225002540|gb|ACIZ01000039.1| GENE 23 22455 - 22697 206 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551592|ref|ZP_04440317.1| ## NR: gi|229551592|ref|ZP_04440317.1| hypothetical protein HMPREF0539_0848 [Lactobacillus rhamnosus LMS2-1] # 8 80 1 73 73 140 100.0 3e-32 MHISSINMYPDPGGDVLLQGDIVLEHVLILKNVKLIEGQYRWYIQFPRYADGRTVHPISK SFYDYLLQQLTEYYHQATAE >gi|225002540|gb|ACIZ01000039.1| GENE 24 22699 - 26511 3185 1270 aa, chain - ## HITS:1 COG:L148778 KEGG:ns NR:ns ## COG: L148778 COG4932 # Protein_GI_number: 15672133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Lactococcus lactis # 223 1252 1033 1969 1983 146 24.0 2e-34 MMKTARRSAVIVALVSLFVQLFIPASMAIAASMTNTKVADWRNTWHLHLFNGMNWTENNI WMKKVDGKVAFCVEHGVDLDMIGSGYNPSTYSDSKKTQLAKIAYYGYHQNPTNRNYAVTQ MIIWETLGDTLLTTTNKSYQTEKKAILDKVAAHDRKPSFNGKQITLAVGDSITLTDTNGR LAAFAQQTANTANLKITKSGNKLTLTATSQSKESGKVAYAIAKAADVGTSFVYTKGSQQK LVNFKLSSNGEFSLPIKVNLNGNVKAKKVDADTNKALPGAKLKFEFNGTTKEVTTGTDGY AALNGIKAGTKIKISEVTAPNGYVNKGELKEVTIEPGKTVEVVLGNKEQLGNVTLAKIGR EFGSDMFNSYYSLNGAVYGIYTSTGTRVGAITTDGNGKGTLQNLKLGSYYALEEKAPAGY VLNTAKLPFELKYAGQTVAVTTAHVDTTDQEQRGTATIIKEDTVTGKQPQGAASLNGAVY ELHRAADDKLVKSVTIANNTAYVSGLELDDYYWQEVKAPTGYVLDPQKHAFKLAYAGQNV TTATATTTVKEQVITGDLDLLKYGNYDWTTQGKGTKPVMLKDTQFTVTSKTTGKVVRIGL TDAQGYVKFADLPYDTYTVAETNTPTGYNGIKPFTVVVDGTQKSQHYSIENKVIEEKLRV VKVDTETGKTVLRAGAIFRIKNLQTNKYEVQPTADKTGTTDKFATDNSGELITAEALGYG KYQLEEVQAPEGYVLAKEPAKFTIDGSHKDGSVVIKFADLSQKGVATLTKTGATPVAVEK VETEYGDQYKFKYDYTALAGAKFEFKAAEDITTADGTVHAHKGSVVATGTTDAKGQIQTP ELYLGKYTATEVAAPNGFIMNPDPIAFELKYAGQEVTVTSTSLEAKNEFQQLDITLNKQE ESITGWKDNLPEIKNAAANGQVFGLFTQGETTIGETVIPSESLVATTTVKDGKAEFGAIQ LPEGYYFVKELDAGDKHDLNMTMYGFHFHITDNEKIKHIDLNDGKAIDNKLHENELSFKK INEAATLISGKGYSYAMTGNAAGAIFELLDADKKVIQTITVGKDSIGSIKHLPVGTFYLR ESKTSATNLVLSKETLKLVSTKGGVTVFDSKDKQIGVARADAKEPTIAFELTNDLIKGTG ELTKTDVSTGKRLPNTGIRILDENNRTVVSGRTDKNGVFSFGNLPAGKYSFQEYDAPKGY EISEALVPFEITKDGEIVKTVMTDNQTPKPGLPQTGNATSRWLIVVGVVLLLGVLAAVVV IGGAKKKDGK >gi|225002540|gb|ACIZ01000039.1| GENE 25 27272 - 27700 483 142 aa, chain - ## HITS:1 COG:no KEGG:LGG_02543 NR:ns ## KEGG: LGG_02543 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 142 1 142 142 258 98.0 4e-68 MPIKTLPEDQLIAMSQSVVKEVAKAFNFPYYVNDLTHDANFDTDHTTTKLEFELTLLNDP DPERTISFYSDASADPIMGGAASAQVTIVSDITFIYLNDGYKDSYLIIIHDGKVVQNLKL EQQILSGPEIENLINQVIPQAQ >gi|225002540|gb|ACIZ01000039.1| GENE 26 27956 - 28630 587 224 aa, chain + ## HITS:1 COG:no KEGG:LC705_02547 NR:ns ## KEGG: LC705_02547 # Name: not_defined # Def: integral membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 224 1 224 224 390 100.0 1e-107 MTKRSNFLYWLNIGGDMLYLLIVGGLYLSGHSLFHGQMMLLAQVASGILIVSLPRLMEHW WHFRFPPSLIYLFEIFILLSVLLGTGLQCYSVPYWDKFEHLFSAAMLAGLGFAIFTALTP AKRLAATSPLLMALFALAFGTTIGVLWEFYEFTFDGLLGMNMQRYMAAGGELLRGRAALM DTMGDLLMDFLGSLGLALVGYFGIKRDLSWLKTFAFQPHQTRHK >gi|225002540|gb|ACIZ01000039.1| GENE 27 28646 - 29287 540 213 aa, chain - ## HITS:1 COG:no KEGG:LC705_02546 NR:ns ## KEGG: LC705_02546 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 213 1 213 213 402 100.0 1e-111 MLPWPKKIPQPNLPTIPETDLIPSTYFSIIQNGIFPKNWWLSTSEPTSDGLTGVGLHALA TPGPAITSDDLPSDFLPFAHTAHQYFGFDLHHEVRRIRYIDTEVDQWLTVAPDFDTFLKR LQPHPIQLPELPVDPQIFGHMAVMATASDWPALFDHAREFMSGETLGQWLMWLAASDDPA KRQAAAEEYRFLVRYQPNLLTPNVTMNLQHLLH >gi|225002540|gb|ACIZ01000039.1| GENE 28 29489 - 30253 499 254 aa, chain + ## HITS:1 COG:no KEGG:LC705_02545 NR:ns ## KEGG: LC705_02545 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 254 1 254 254 471 100.0 1e-131 MRNALIYVHHEPLAHLFLTYGISASDLLNSQQKLPEHLLLLPPVNEQEQIDPHTWFNIIN GKDQVRDFLRSKEGQTRCWLDYSRSRFLQELTPNEIAELLYLGHAKTHLNSPFYYKLQNE LVYLPMRNGTVNMYLRHESLFEAFLAAAINKYLRRIANEQPFWLRLRQQHFSHLSHGAYT QLLPLLEDGVVFDFRHVQFSRERITIPLLALHERFIPDGIFPDETARKLGKLVLMRQKNQ WLLDPDRNQEKTER >gi|225002540|gb|ACIZ01000039.1| GENE 29 30400 - 31788 1174 462 aa, chain + ## HITS:1 COG:lin0849 KEGG:ns NR:ns ## COG: lin0849 COG0770 # Protein_GI_number: 16799923 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Listeria innocua # 1 457 1 455 457 326 40.0 6e-89 MKMTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLHGERDGHEFIPAAAA AGAVATFVAEDHLPMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTTK DMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLAE PDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEPLLVSRAKQVTQSQ ETFGLHPENTLFAHSISGHRNHTEFTVEQWPELTFSIPIMGEYNVVNALAALLVGRRFHV KPEAMQKALAHFQVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSEFQTAGRHIA VLGDMLELGDQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKYPQDQVHYYPLD AKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALVAGGHA >gi|225002540|gb|ACIZ01000039.1| GENE 30 32062 - 33570 1572 502 aa, chain + ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 440 3 440 516 544 62.0 1e-154 MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL QHIDKADRSIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLADHP QIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQTLLF SATMPAAIMRLTNKFMKEPVIVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPD LALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAA RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTIEDLTKK RMLPMKPPTAEEALMGQISSGLATIKEQVEANDTEKYEAMAETLLENYTPLQLVSAYLKA VSPDDASAVPVKITPERPLPRRGRNNHGHGNNRGGYKGGYKGKRRDGGYQGNRDGKRSYD KKRNFGDKRKNVKRNFKIRTGE >gi|225002540|gb|ACIZ01000039.1| GENE 31 33739 - 34113 388 124 aa, chain + ## HITS:1 COG:SP1699 KEGG:ns NR:ns ## COG: SP1699 COG0736 # Protein_GI_number: 15901533 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Streptococcus pneumoniae TIGR4 # 1 116 1 116 120 123 50.0 7e-29 MIYGIGVDVTDLARIQAAQEKNHGFAAKILTPKELANYQQLDGRRAVEYLSGRFSAKESY SKAFGTGLGKVALQDVEVLNNELGKPIVTKHPFPGKAFVSISHSETLVFTEVILEKEGPE RDDR >gi|225002540|gb|ACIZ01000039.1| GENE 32 34100 - 35239 848 379 aa, chain + ## HITS:1 COG:L0103 KEGG:ns NR:ns ## COG: L0103 COG0787 # Protein_GI_number: 15672826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Lactococcus lactis # 7 371 7 364 367 339 48.0 7e-93 MTIGNLRPATVLIDETAILHNVQHEVARLKKQTQLFAVVKADAYGHGMLRVAHVAKAAGA SGFCVALLDEALDLRAANYTEPVLVLGIVPSQYAAIAAAQMVSLPLSSVDWLKQALPVLE AQPELPPLRLHIALDTGMGRIGFTDDQTLLDAVAFIQAHPKAFTIEGIFTHFATADDPDD AYFKQQVAKFNHMVALLPHRPRYVHVSNSATSLWHAACNGNMVRYGVAIYGLNPSGDVIP TTPFPLEPALSLESELTFCKQVHAGDGISYGVTYRATGDEFIGTVPVGYADGWLRRLQGF HVLVDGHPCEIVGRICMDQFMIRLPKAYPAGTKVVLIGQSGDQEITLLDVAKYSHTIHYE IACNLTSRLKRQSINPIAR >gi|225002540|gb|ACIZ01000039.1| GENE 33 35351 - 35599 266 82 aa, chain + ## HITS:1 COG:no KEGG:LGG_02535 NR:ns ## KEGG: LGG_02535 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 82 1 82 82 142 100.0 3e-33 MKKETSVTVALDSAIKARLDAYCELNDMGVQDVITEAVAKFLQSQAPEINQLISGYVAMG QINTEISHAFSACESEAYAHIR >gi|225002540|gb|ACIZ01000039.1| GENE 34 35619 - 36002 218 127 aa, chain + ## HITS:1 COG:BH0522 KEGG:ns NR:ns ## COG: BH0522 COG2337 # Protein_GI_number: 15613085 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus halodurans # 5 118 3 116 116 149 67.0 2e-36 MDVTVKRGDVFFADLSPVVGSEQGGNRPVLIIQNNVGNHYSPTVIVAAITSKIQKPKMPT HVGLRAKQDGVERNSVILLEQIRTIDKQRLQARVTALSSAKMAAVDRALAISVGLVSLPK PKTYNKN Prediction of potential genes in microbial genomes Time: Wed May 25 19:39:54 2011 Seq name: gi|225002539|gb|ACIZ01000040.1| Lactobacillus rhamnosus LMS2-1 contig00043, whole genome shotgun sequence Length of sequence - 30775 bp Number of predicted genes - 22, with homology - 22 Number of transcription units - 10, operones - 4 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 140 - 199 3.2 1 1 Tu 1 . + CDS 236 - 763 527 ## COG4708 Predicted membrane protein + Term 857 - 904 6.1 + Prom 952 - 1011 5.3 2 2 Op 1 21/0.000 + CDS 1059 - 5525 3463 ## COG0069 Glutamate synthase domain 2 3 2 Op 2 . + CDS 5590 - 7026 1122 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases + Term 7042 - 7113 18.7 - Term 7040 - 7087 10.2 4 3 Tu 1 . - CDS 7106 - 7804 357 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 7842 - 7901 3.7 - Term 7952 - 7987 4.3 5 4 Tu 1 . - CDS 8101 - 8766 622 ## COG0517 FOG: CBS domain - Prom 8815 - 8874 4.4 6 5 Op 1 . - CDS 8935 - 9531 307 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 7 5 Op 2 . - CDS 9595 - 11046 942 ## COG1511 Predicted membrane protein - Prom 11091 - 11150 8.0 + Prom 11025 - 11084 8.6 8 6 Tu 1 . + CDS 11193 - 11729 443 ## COG1695 Predicted transcriptional regulators + Term 11796 - 11836 4.1 - Term 11782 - 11825 5.2 9 7 Tu 1 . - CDS 11858 - 13228 1236 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 13297 - 13356 8.5 - Term 13525 - 13571 13.5 10 8 Tu 1 . - CDS 13636 - 14616 882 ## COG0039 Malate/lactate dehydrogenases - Prom 14657 - 14716 5.2 + Prom 14838 - 14897 4.4 11 9 Op 1 7/0.000 + CDS 15083 - 15634 523 ## COG0193 Peptidyl-tRNA hydrolase 12 9 Op 2 2/0.000 + CDS 15710 - 19237 3080 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) + Term 19265 - 19307 -0.7 13 9 Op 3 1/0.000 + CDS 19315 - 20889 1254 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 14 9 Op 4 . + CDS 20896 - 21159 398 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) + Prom 21173 - 21232 2.8 15 9 Op 5 . + CDS 21252 - 21653 427 ## LGG_02518 septum formation initiator + Prom 21847 - 21906 6.2 16 10 Op 1 2/0.000 + CDS 21935 - 22414 341 ## PROTEIN SUPPORTED gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein + Term 22423 - 22467 6.1 + Prom 22439 - 22498 1.5 17 10 Op 2 10/0.000 + CDS 22535 - 23842 708 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 18 10 Op 3 11/0.000 + CDS 23842 - 24387 633 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 19 10 Op 4 1/0.000 + CDS 24449 - 26599 1353 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 + Term 26609 - 26641 2.4 + Prom 26827 - 26886 5.9 20 10 Op 5 2/0.000 + CDS 26918 - 27802 786 ## COG1281 Disulfide bond chaperones of the HSP33 family 21 10 Op 6 3/0.000 + CDS 27865 - 28866 530 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase + Prom 28928 - 28987 4.4 22 10 Op 7 . + CDS 29017 - 30513 1387 ## COG1190 Lysyl-tRNA synthetase (class II) + Term 30519 - 30562 3.0 Predicted protein(s) >gi|225002539|gb|ACIZ01000040.1| GENE 1 236 - 763 527 175 aa, chain + ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 6 169 1 158 162 93 38.0 2e-19 MKQTKMGIRGWVLNALVAAIYIVLSLGPASLNLASGAIQFRLSESLNHLVVFDRRYLIGV VSGVVIFNAIFSPLGWLDVVFGGGQSLIGLSVVAWLAPKLKQLWQRFALNIAVMTLTMAL IAVEIIWTGHLKFATMFLPTYGSLMLSEFIVMTLSAPVMLALDRIVHFRTAMAQK >gi|225002539|gb|ACIZ01000040.1| GENE 2 1059 - 5525 3463 1488 aa, chain + ## HITS:1 COG:L0119_2 KEGG:ns NR:ns ## COG: L0119_2 COG0069 # Protein_GI_number: 15673268 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Lactococcus lactis # 375 1169 1 789 791 953 57.0 0 MKRLKDDTNLMYLPEYEHAACGMGFIAQVDGHASHEIVEKALTMLQRMNHRGGTGAEPDT GDGAGILMAMPDAFFRDEMTQAGLTLPAKGDYAVAQLFLPHDEAKKAAMLQAVVDQIDDA GFPILRTRNVPFIYENCGPAAQQAMPGFVQIVVQRPADTKAGREFEDHLYALRRQLEKTF DRQSMYICSFSSRTLVYKGMLHAYQVSLFYPDLHRPQMQSAICLIHSRFSTNTFPSWDRA QPFRFLAHNGEINTLKGAENWMTSHGIEIYDETDSDSAKLENCMEYLYRHGRSIPQSLLM MVPEAWGAGTEMSDEQRAFDEYNATFMAPWDGPAALCFTDGIQVGAFLDRNGLRPSRYTL TNQRQLVVASESGVVDIDPGDIVEKGILAPAEMLLLDTSTGRIFKTDELKRHCAEGYPYQ QWINANRLTLDQLPEVQPKEDIAPDQLKKLWLRHGYTHEVIQTALIPMAENGGEPVLAMG FDSPLAVLSNHPQSLFTYFKQSFAQVTNPPIDPLREKVVIGTFGFLGRDGDCTRDTADNC HKLKIDSPILDDQAYAKVLSLDLPLLKVAKLSLAYDLTDRPDRLAHVLKELFTQAENAID NGATILILTDRPVADNQLTIPVLLAVSGLHNYLVRQGKGTAASLVVDTAEACEIHHFACL VGYGAAAIHPYGAFATLRERGYDQQLPSFCAAATKGIIKIMSRMGISTTAGYQGAQLFEA VGLADDVVAQYFTGTPSRIGGINLNQLENEYYQKYQLAFSHHAIDDLPSGGSFQFKADGE AHLYNPKSIYQFQKAVRSGDYQAYQQYAAEVEQEAKTTPVTLRSMWTIVPSGQQAVPLSE VEPVSAIVKRFKAGAMSFGALSEEAHETIAIAMNRLGARSNSGEGGENRNRFHVGADGVN RNSKIKQVSTARFGVNTEYLMSAEEIQIKMAQGAKPGEGGQLPAGKAYPWVASIRGSIAG VQLISPPPHHDIYSIEDLAQLIYDLKQVNPYAKINVKLVSSTGVGTIAAGVVKAGADTVV ISGYDGGTGAAPRNSTRDCGLPWEMGLADAHQTLALNRLRQRTTLEVDGKLLTGRDIAVA IMLGAEEFSFGTLTMVALGCVMMRKCNLNTCPVGIATQNPELRKLYAGRPENVMHMMQFL AEDLREQMAALGYRTVDQMVGHGEHLKPRYVPYGKAKTLNYDRMLGKTVPIARKKANPFK PKYDWPDLDRFAETSLKQQNATSIDLPINNVDRAVGTRLGGWIAAHFGNNGLKPGQLQFN YHGTAGQSFGAFITQGLAIKLVGEANDYVGKGLSGGRLIVAAPEQARELYTHSPIVGNVA CFGATGGEAYFNGRAGERFCVRNSGAQVVVEGVGNNGCEYMTGGVAVILGRTGRNFAAGM TGGVAYVYDWTHDFAKNCSQELVDLYRLDEAGDDSVLLDLLKKHVQYTQSETAEMILTHW ETEKTKFVKVYPRDYHKMRDLIQKFTKPELSEEQVIEQAFDTAMGNGH >gi|225002539|gb|ACIZ01000040.1| GENE 3 5590 - 7026 1122 478 aa, chain + ## HITS:1 COG:L114827 KEGG:ns NR:ns ## COG: L114827 COG0493 # Protein_GI_number: 15673267 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Lactococcus lactis # 1 475 1 478 479 564 56.0 1e-160 MADPKGFLKYQRKDNPMRPIMQRVKDFDALELDVSMEERRKQAARCMNCGIPFCHHGVFY GGGRAVSGCPNDNLIPEWNDLVYRAEDKRAFERLSRSNMLPDMTGRVCPAPCEVSCVQAL NGPGVTIRNNEKYIIEQAFKNGWVVASGKPLQRTGKKVAVIGSGPAGISAAWRLNQLGHS VTIFERDDRFGGFLMYGIPNMKLPKIVVQRRIETLKQVGIELVANTEVGKDISADELKQQ FDRVIVCTGARQARELPVPGRELGGIVQAVDFLKTATQTVLKDGTQANTQLKGKRVLVLG GGDTGNDCIATAIRQGCAGVTQLEITPALPPKRTAGNQWPEWPMTLKAGYGQKEAKALFG GDVTTYAATVTAFFGEHGQVSEAEISQVDHFKPIAGTEKKVKVDLVVLAMGFTGPEADVF DAFGITAKNTNFTTNDTQVYVAGDCRRGPSLVILGIHEGRMCAEKVDASLQTLASEAL >gi|225002539|gb|ACIZ01000040.1| GENE 4 7106 - 7804 357 232 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 31 231 5 193 194 142 42.0 7e-34 MKRITELMHHLAAMMHYLHSHHLKPKYRNRLLFIAVFITVCLIAVFTGQHAKESASTASS YASVTKLAKTNHTPSYTAAEITRVTPKKIDWKAPSESRPYPDVSKHPNLSLHVNLKKQRV FIKDGSKTLYTMYASTGIDDTTPHGDFTIQDERGYEFFNPNEQMGAHYYTSFYLHGTYLF HSVPTDVNGNYIQSEAAKLGKKPGSHGCVRLSISDAKWIYEHIPTGTPVSIH >gi|225002539|gb|ACIZ01000040.1| GENE 5 8101 - 8766 622 221 aa, chain - ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 210 1 210 211 243 57.0 1e-64 MLIKSLVLKKEFLTTVKETVTLEEALKILEDSGFRCVPILDESGTIFRGNIYKMHIYRHK SQGGDMSLPVTYLLKNATKTIPVNAPFFKVFFNIKDLPYIAVLDENANFYGILTHAKLLG MLSEAWNVDVGSYVLTVMSTGERGDLAKMSKILARYVSISGCITLDAKRDEFVRRTLFTL PAGTDENTLNEIVSRLEKKSFRVVEIDDLQSGQPLRVDEEL >gi|225002539|gb|ACIZ01000040.1| GENE 6 8935 - 9531 307 198 aa, chain - ## HITS:1 COG:mll1286 KEGG:ns NR:ns ## COG: mll1286 COG2249 # Protein_GI_number: 13471345 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Mesorhizobium loti # 6 142 3 139 195 97 32.0 2e-20 MATKLILIVYCHPYTHSFNHAVLTHLEKNLTDHGLHYQLIDLYGDHFQPFYDIEELRLFH QGQTHDPLVKHYLDQLKTAQGIIFVTPIWWNSVPGMLKGFIDKVMKEGDGLTHTVTKTGV RGCLTNLKRAYVFTTSTSPTFWFRTTSGNSIQKIFINKTLKQLGIQKAKWYNFGNISHAS KTQRDHYLVTCQKRPLLF >gi|225002539|gb|ACIZ01000040.1| GENE 7 9595 - 11046 942 483 aa, chain - ## HITS:1 COG:L103741 KEGG:ns NR:ns ## COG: L103741 COG1511 # Protein_GI_number: 15672864 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 275 1 309 799 125 25.0 1e-28 MIKSEWLSVLKRPMVIVVLFFITLIPAIYSGVYLSSMWNTYEHTKDLPAAIVNNDTGITD NGQAVNAGKDLVKGVLKSDSMHYHVTSKQEADRGLKNGDYYLVIEIPNHFSKDSRSLLTQ HPTAMNITYKVNPGTDFFASQIAKGTATAIQAKLNQQISAIYFKNLTAGVVSGTQGNAKL LTAIDALNAGSQALSTGLSQQKTAITALSNNLPSTAQPLATQLTSSNIALSNAATSLTAG TAKVQSALTQSLKTQPRLAVASKNIHLLSAPVTLTRVDISHTPTNGVGMAPFAIAIGLYV GCISLSFMYDMYSPKTKPTKAIAWWWSKYSLLLVLIGIQVGCQAIVVMSLGLKPLSIGNT CLAMLVTAITFITCVFGLNTILGAFGKYLVTILLILQLGASTGVYPLETANVFTRISSPF LPMTYGIHAMREAISIGGQMTHDLVVMLVVTLVINGLVIVKLELDRKHEKFSDLVDDVVS SIN >gi|225002539|gb|ACIZ01000040.1| GENE 8 11193 - 11729 443 178 aa, chain + ## HITS:1 COG:BH3951 KEGG:ns NR:ns ## COG: BH3951 COG1695 # Protein_GI_number: 15616514 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 116 11 121 184 68 29.0 4e-12 MNNEQIILGLLYKHSRTGYELNEVFKNIFSHFYDASFGMIYPTLRRLEKNGLVSKKMVVQ SGRPNKNQYAITEEGKKVFEDSLDASVVPDTRHSDFLMRLYFGEYESDTALQAMIQQQIG WLGMQIDKLQLRLKEWPNMTKTQHLSFSVGIAEYEAQIKTLKAYLQTDEPKGNDSEHR >gi|225002539|gb|ACIZ01000040.1| GENE 9 11858 - 13228 1236 456 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 2 456 11 465 466 224 28.0 4e-58 MNKKKWWLLALGAVVILLGGFYIFRSMHYRDHFLPNTEVLGVDVSDQTVSAANKKLIQQF SERQYTFVEDDKKVLKVKGSALGISQDFNQGLTQVLNKQNPWQWTTSIFAGQKAHAEEDP SINKTALTKFAQTTADKLNQGRQGPENAKLVADGTKYKIQKEVNGTQIDADKLATTVTNV LDNHQQTVNLAAAYKKPTVTASSSSLQTTERDMNKLAGTNVSLQIQTKTVTVPQATVMSW IINDNGKATVSSQAVTNYVSALSQQYSTIKKTRQFNSQQQGTVSVPAGTYGWSINVSATT AMIVASVKAGQDLNKEIVHNGSGYSTDGDIGNTYVEVSKEKQHEWYIKDGKVVMDSDIVT GKPGQDTPSGVFYVWSKQRNATLRGKNDDGSDYASPVSYWMPIDYTGVGLHDSPWQPKYG GDWYKEHGSHGCVNNPPDFMAKLYAAVDEGTPVIVY >gi|225002539|gb|ACIZ01000040.1| GENE 10 13636 - 14616 882 326 aa, chain - ## HITS:1 COG:L0017 KEGG:ns NR:ns ## COG: L0017 COG0039 # Protein_GI_number: 15673313 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Lactococcus lactis # 4 324 1 321 325 446 68.0 1e-125 MASITDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPF TSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGI FLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGE HGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIA TALARISKAILNDENAVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEIPLTDHEEE SMQKSASQLKKVLTDAFAKNDIETRQ >gi|225002539|gb|ACIZ01000040.1| GENE 11 15083 - 15634 523 183 aa, chain + ## HITS:1 COG:lin0245 KEGG:ns NR:ns ## COG: lin0245 COG0193 # Protein_GI_number: 16799322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Listeria innocua # 1 183 3 184 184 189 49.0 2e-48 MIVGLGNPGRQYAGTKHNMGFMVVDGLAQRMGLTLNKLEFDAATATTRVHDEKVFLVKPQ TYMNASGRAVRQLMMYYQIRLDEILVVHDDMDLTLGKLRLRQRGSAGGHNGIKDIISATG SDEFYRLKIGIQHPQRQRVVDWVLTPFAKTDQPVIDAAITKADDALEDWLNGMPFAQLMN KFN >gi|225002539|gb|ACIZ01000040.1| GENE 12 15710 - 19237 3080 1175 aa, chain + ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 25 1161 28 1166 1177 1140 50.0 0 MNLIDMVQADPELSALWPKLETGRHLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHA DELAADLSSLLGDALVYDFPVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGIIVTSLA GYKRILPAPAAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDI YPLNQDDPIRIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDMIASDQVLTDAGARI GKQATAYKAKVKDAAAKQAITDGLLTTSQQLQALERPENLALYAPELYPEHHRITDYLAG DALVAFDDYSRLLDSDTNLVQDTAEWYSQLQEEGRLLPKTPNPTIQALNQRDRHPRLYLS LFQKGMGQLRLDSLTNVPSRNVQQFFSQMPLLKTETDRWVKQKQTVVFLVSDKNRLDKLS ATLHDFEISNVVTEPNQLLSGKVQLTDGSLKNGFELPDLKLVVVTEHELFNARQRRRARH QTLANTERLRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIP VDQLNLVQKYVSADGKTPNVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYA FGPDDDLQQKFEDEFPYPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAA FKAVDYGKQVAILVPTTILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNG TIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRT LNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDM ERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANT LIIENADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSG FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNKRRGLKTVQKTDAEIDLG LEAYLPTDYVADSRQKIELYKRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLK RFADLAWVDHVQKNDQKMTVVLTPQATAKAQGEPIFKALAATTLKAQVAIADGKLTVTLA VPATMKEDEWLGQLTAFMKGLLAVVNPQPGKKPAA >gi|225002539|gb|ACIZ01000040.1| GENE 13 19315 - 20889 1254 524 aa, chain + ## HITS:1 COG:lin0247 KEGG:ns NR:ns ## COG: lin0247 COG2244 # Protein_GI_number: 16799324 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 1 517 1 522 529 311 39.0 3e-84 MHNQQMKHLMRGAWILSLSSLIAKILSAVYRVPFQNMVGDTGFYAYQQIYPIYGLGMTFA LSGFPVYISKLVAEADSLEAKRTVAHQSRVILTWISWALFLGLEFFGAAIAQAMADPELL PLIQMVAFMFLTMPLLATGRGYFQGTFDMVKTATSQVVEQLVRVAVILLAAWWFLQYHWS VYQMGAVAMSGAFFGGAAAALTLWRPYRQVFGQQQYQFPGLHAYGRLISRFIREGGAITL YAALLILLQLIDSFTVTKGLTGSGIAMATAKSLKGVYDRGQPLVQLGLVVAASLSTTLLP SLTQARQLRQRRQFIQRGAELVHFNLAFALAAASGLIVLMPAINLLLFGDTAGTYALQLY ALAIAVVAMINAYNAILQSLDRYTGISVALLLGIVVKALSNEPLVMRFGTAGASGATILA LGVILCLIYYAVPETIKGRSALRLFVPKLVAVTGIMTVIVHVTVGWIPLSSRTVAVGVTL LGVVIGVVVFLIAGTWLRLLTLREMLDLPGGKKYLRLLRRIKAR >gi|225002539|gb|ACIZ01000040.1| GENE 14 20896 - 21159 398 87 aa, chain + ## HITS:1 COG:BS_yabO KEGG:ns NR:ns ## COG: BS_yabO COG1188 # Protein_GI_number: 16077127 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Bacillus subtilis # 1 82 1 82 86 93 65.0 8e-20 MRLDKFLKVSRIIKRRTVAKEIADKGRITINGKVAKSSTDVGVGDTLVINFGNKTLTVRA DDLVETTKKNEAADMYTVLKEDYKETF >gi|225002539|gb|ACIZ01000040.1| GENE 15 21252 - 21653 427 133 aa, chain + ## HITS:1 COG:no KEGG:LGG_02518 NR:ns ## KEGG: LGG_02518 # Name: not_defined # Def: septum formation initiator # Organism: L.rhamnosus # Pathway: not_defined # 1 133 1 133 133 223 100.0 1e-57 MAKNNISQLNNAYTREHRQKSTRVPKSRAHAVHMKRIRNLLIVMVAILGLGGVSLMRTQM TLGETNQAVAKAKSNLNKLKANKAALKVQVDQLHNDDYTAKLIREKYLYSKPGEIIFNLP DKANKVPDLNVTQ >gi|225002539|gb|ACIZ01000040.1| GENE 16 21935 - 22414 341 159 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] # 1 158 1 133 134 135 49 2e-31 MAVEVGTKVAGKVTGITKFGAFVELGDGKTGLVHISEVSDAYVKDIHDVLHVGEPVTVKV LSIQDGKIGLSIRKAVDKPQQRENDHYHENRHAPAPHAGNNRFQGGARNSGNRFGHKAQP VKGDFDAMMSGYLKESEDRLSVLRRNTEGKRGGRGGRRS >gi|225002539|gb|ACIZ01000040.1| GENE 17 22535 - 23842 708 435 aa, chain + ## HITS:1 COG:TM0579 KEGG:ns NR:ns ## COG: TM0579 COG0037 # Protein_GI_number: 15643345 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Thermotoga maritima # 17 404 8 382 414 151 28.0 2e-36 MSPKLFEQFEFTPHTRVLVAVSGGVDSMVLLDLAVRAPNLDVVVATFDHRLRPESRQEQA FVAAAAARYHVPVVTGTWQRSAATAVSEAAARQARYDFLNASADSQAATVIMTAHHADDQ LETVLFRLGRSGDPAALVGIRPDQPWRKKRLVRPLLNFSKDDIRAYAGRHGLDFCDDPSN ADTRYARNQLRHQVIPAFKKQNPELLRHVQRFTTEQSGLVALAQMQLTEWQQRLRINSVT IDWRAAANQPRTIQLMLLATLLRQWQPRVNHGLLMPILKSLNDTRERRFDLGAGVTIAVQ AAKIVKLVPKPKLAPATFSRIGQKCQTARGTFQLRTKVAGDQGIPVRVRLPITLRTRQAG DIVYLPNGVKQKLRRFFINAKVPARTRDQLLVLAQGHQIFWIEGQPLERLSLPAQTDILH VVLVKLPDVDRSEDK >gi|225002539|gb|ACIZ01000040.1| GENE 18 23842 - 24387 633 181 aa, chain + ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 1 178 1 178 179 234 67.0 6e-62 MNPDILKVLYSQDDIHAITTRLGAELKRDYAGKNPLVVCILKGAIMFMTDLVREIDDYME LDFMDVSSYGDATESSGEVKIIKDLDASVKDRDVLIVEDIVDTGRTLKYLTDIFKTRKAK SVRICALMDKPEGRVVDVQADYVGTTVPNEFVVGYGLDYAERYRNLPYIGVLKPEVYAAK S >gi|225002539|gb|ACIZ01000040.1| GENE 19 24449 - 26599 1353 716 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 11 668 7 635 636 525 45 1e-148 MKKKQNGLFSSTLTYIIIFVLLVTGFAYYMRDNGTTSSQEIETSTFMSELKKDNVKSYSL QPSGGVYKVSGEYKKAEKSSGTNNSLSFFGNQSTKVTKFSTYIPTNDATLSQIQKMTNAN NVKTNTQEESQSGVWFSLLITVVPIVIMMIFFYMMMNQAGQGGGSGRVMSFGKSRAKQAD KNANKVRFSDVAGAEEEKQELVEVVEFLKDPRKFSALGARIPAGVLLEGPPGTGKTLLAK AVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPSIIFIDEIDAVGRQRGAG MGGGHDEREQTLNQLLVEMDGFTGNEGVIVIAATNRSDVLDPALLRPGRFDRKILVGRPD VKGREAILKVHAKNKPLAPNVDLKEIARQTPGFVGADLENLLNEAALVAARRSKKQIDAA DVDEAEDRVIAGPAKKDRVISPKERTMVAYHEAGHAIVGLVLSDSRTVRKVTIIPRGRAG GYAIMLPKDDQFLLTKKELTEQIVGLLGGRTAEEIIFGVESTGASNDFEQATQIARSMVT QYGMSDRLGTVQLETEGQPFLGAQYGQTPPYSETTATAIDDEVRRIIDEAHKQAYEIIQA HRDQHKLIAEALLKYETLNEKEILSLFNDGKMPERDQDEFPSEKAATFEQSKAALEHKDK EKQADEEAHAKSEGQSNADQTDQDAHDDNTTDSVEKPDDTTPGSNPSDDDHQNPQA >gi|225002539|gb|ACIZ01000040.1| GENE 20 26918 - 27802 786 294 aa, chain + ## HITS:1 COG:lin0254 KEGG:ns NR:ns ## COG: lin0254 COG1281 # Protein_GI_number: 16799331 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Listeria innocua # 1 282 1 282 294 296 51.0 3e-80 MSDYIASALSRNAHFRIFAVDATQTVSEAQRRHDTWSAASAALGRTLIATALLAASGLKN TNDLLTVRIKGDGPVGSIVTDGTQLGTVRGYVQEPHVNLPLNLVGKIDVAKAVGKHGMLA VTKDIGIGEPFTGQVPLVSGELAEDFTYYLAKSEQIPAAVGLSVFVNADNTIKVAGGFML EALPGATDAELSELEANVKTLPLVSELLKSGLTPEQIIQRVAGKEPVRFLDTQALRFACN CSKKHFGDIMATLPRKQLQEMIDEDGGAETTCKFCGNQYHYSVADLEALLARHE >gi|225002539|gb|ACIZ01000040.1| GENE 21 27865 - 28866 530 333 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 4 318 30 343 353 208 37 3e-53 MWHIADVEIPNRLVVAPMAGVTNAAFRVTAKEFGAGLVVCEMISDRGIMYKNKKTLSMLF VDPREHPISIQIFGGTKETLVNAAKFVDQNTAADIIDINMGCPVPKVTKTDAGAHWLLDP EKVYEMVAAVTDAVSKPVTVKMRTGWDEDHIYAVQNALAAERGGAAALAMHGRTRKQLYS GHADWNILKEVKQHLSIPFIGNGDVRTPQDAKRMLDEVGADAVMVGRAALGNPWVLKQMA AYLDHGELIPEPTPREKIATAKLQLQRLVDLHGEHQAVREFRMQAAYYLKGIPRSAKTKA AVNMVDTQAEVNHIFDDFVAQTEARARQRQGSH >gi|225002539|gb|ACIZ01000040.1| GENE 22 29017 - 30513 1387 498 aa, chain + ## HITS:1 COG:SP0713 KEGG:ns NR:ns ## COG: SP0713 COG1190 # Protein_GI_number: 15900610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Streptococcus pneumoniae TIGR4 # 10 497 3 491 491 669 67.0 0 MAKDNGQQPEMNDQMIARREKMDALREAGIDPFGHRFDRTHSAAKVREEFGEDDKETLLE EKPEVTIAGRMMSKRGKGKVGFADIRDRSGKMQIYVRKDVVGDENYMIFKKADLGDILGI SGEVMKTDSGELTVKANHVTHLAKALRPLPDKWHGLTDVEQKYRKRYLDLISNPDSFDRF VKRTKIVSAVREYLDNHGFLEVETPVLHNQAGGANARPFITHHNALDIDLYLRIALELHL KRLIVGGMERVYEIGRVFRNEGIDTKHNPEFTELETYAAYWDLSDVMVETEGIFRFAAHK VLDSGKLTYQGMDIDLDAPFARINMLDAIKDKTGVDFWPEMTVDEARKLADDHEVHYEPY WKVGHIISAFFDQFVESTLIQPTFITGHPIEVSPLAKKNPKDTRFVERFELFVGGGEYAN AFTELNDPIDQRQRFEAQAAEKTAGNEEAQGIDDDYVEALEYGMPPTGGLGIGIDRLVML LTDAPSIRDVLLFPTLRP Prediction of potential genes in microbial genomes Time: Wed May 25 19:40:09 2011 Seq name: gi|225002538|gb|ACIZ01000041.1| Lactobacillus rhamnosus LMS2-1 contig00044, whole genome shotgun sequence Length of sequence - 45366 bp Number of predicted genes - 61, with homology - 57 Number of transcription units - 18, operones - 6 average op.length - 8.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 9 - 98 54.2 # Ser GGA 0 0 - Term 1366 - 1393 -0.8 2 2 Tu 1 . - CDS 1455 - 1718 249 ## LC705_00836 hypothetical protein - Prom 1825 - 1884 4.2 + Prom 1736 - 1795 6.5 3 3 Tu 1 . + CDS 1879 - 2100 300 ## LCABL_10810 hypothetical protein 4 4 Tu 1 . - CDS 2168 - 2275 138 ## 5 5 Op 1 . - CDS 2397 - 3023 308 ## Sca_0786 hypothetical protein 6 5 Op 2 . - CDS 3076 - 3858 573 ## COG1396 Predicted transcriptional regulators - Prom 3881 - 3940 9.8 + Prom 3934 - 3993 4.7 7 6 Op 1 . + CDS 4019 - 4273 291 ## gi|229551635|ref|ZP_04440360.1| conserved hypothetical protein 8 6 Op 2 . + CDS 4276 - 5037 618 ## COG3645 Uncharacterized phage-encoded protein + Prom 5049 - 5108 2.5 9 6 Op 3 . + CDS 5134 - 5325 130 ## - Term 5038 - 5087 5.4 10 7 Tu 1 . - CDS 5291 - 5881 304 ## gi|229551637|ref|ZP_04440362.1| hypothetical protein HMPREF0539_0893 - Prom 5954 - 6013 2.9 + Prom 5708 - 5767 4.5 11 8 Op 1 . + CDS 5946 - 6302 356 ## LC705_00845 hypothetical protein 12 8 Op 2 . + CDS 6302 - 6394 62 ## 13 8 Op 3 . + CDS 6387 - 6539 73 ## gi|229551639|ref|ZP_04440364.1| conserved hypothetical protein 14 8 Op 4 . + CDS 6544 - 6747 267 ## gi|229551640|ref|ZP_04440365.1| conserved hypothetical protein 15 8 Op 5 . + CDS 6766 - 7251 522 ## LCABL_10930 hypothetical protein 16 8 Op 6 . + CDS 7252 - 7959 383 ## llmg_0805 hypothetical protein 17 8 Op 7 . + CDS 7963 - 8520 614 ## SAK_0618 hypothetical protein 18 8 Op 8 . + CDS 8537 - 9370 747 ## LVIS_1129 hypothetical protein 19 8 Op 9 . + CDS 9367 - 10629 740 ## COG0305 Replicative DNA helicase 20 8 Op 10 . + CDS 10631 - 10975 186 ## gi|229551646|ref|ZP_04440371.1| conserved hypothetical protein 21 8 Op 11 . + CDS 11017 - 11430 96 ## COG4570 Holliday junction resolvase 22 8 Op 12 . + CDS 11444 - 11779 366 ## LGG_01113 hypothetical protein 23 8 Op 13 . + CDS 11791 - 12642 258 ## COG0270 Site-specific DNA methylase 24 8 Op 14 2/0.000 + CDS 12635 - 13351 397 ## COG0286 Type I restriction-modification system methyltransferase subunit 25 8 Op 15 . + CDS 13338 - 14261 471 ## COG0582 Integrase 26 8 Op 16 . + CDS 14272 - 14880 -11 ## gi|229551652|ref|ZP_04440377.1| hypothetical protein HMPREF0539_0908 27 8 Op 17 . + CDS 14893 - 15018 190 ## gi|229551653|ref|ZP_04440378.1| conserved hypothetical protein 28 8 Op 18 . + CDS 15015 - 15530 477 ## LGG_01115 hypothetical protein 29 8 Op 19 . + CDS 15520 - 15810 310 ## gi|229551655|ref|ZP_04440380.1| hypothetical protein HMPREF0539_0911 30 8 Op 20 . + CDS 15863 - 16168 350 ## LGG_01117 hypothetical protein 31 8 Op 21 . + CDS 16165 - 16353 214 ## gi|199598949|ref|ZP_03212358.1| hypothetical protein LRH_06831 32 9 Tu 1 . + CDS 16483 - 16701 203 ## LSEI_1942 transcriptional regulator + Prom 16704 - 16763 2.2 33 10 Tu 1 . + CDS 16911 - 17210 110 ## LSEI_0514 hypothetical protein 34 11 Tu 1 . + CDS 17544 - 18209 217 ## LC705_00865 hypothetical protein + Term 18315 - 18341 -1.0 + Prom 18708 - 18767 3.5 35 12 Tu 1 . + CDS 18852 - 20000 611 ## LGG_01121 hypothetical protein 36 13 Op 1 . + CDS 20155 - 20319 159 ## LSEI_0520 hypothetical protein 37 13 Op 2 . + CDS 20321 - 20485 107 ## 38 13 Op 3 . + CDS 20522 - 21331 358 ## LC705_00870 phage-related terminase small subunit + Prom 21435 - 21494 7.3 39 14 Op 1 . + CDS 21527 - 21982 357 ## LC705_00871 phage-related terminase small subunit 40 14 Op 2 . + CDS 22004 - 23716 1000 ## COG4626 Phage terminase-like protein, large subunit 41 14 Op 3 . + CDS 23728 - 23919 113 ## LC705_00873 hypothetical protein 42 14 Op 4 3/0.000 + CDS 23925 - 25178 727 ## COG4695 Phage-related protein 43 14 Op 5 . + CDS 25132 - 25761 642 ## COG3740 Phage head maturation protease 44 14 Op 6 . + CDS 25803 - 27005 1095 ## LC705_00876 phage-related major head protein 45 14 Op 7 . + CDS 27017 - 27262 156 ## LC705_00877 hypothetical protein 46 14 Op 8 . + CDS 27273 - 27632 198 ## LC705_00878 hypothetical protein 47 14 Op 9 . + CDS 27622 - 27951 282 ## LC705_00879 phage-related head-tail joining protein 48 14 Op 10 . + CDS 27951 - 28337 260 ## LC705_00880 hypothetical protein 49 14 Op 11 . + CDS 28337 - 28723 187 ## LC705_00881 phage-related head-to-tail joining protein 50 14 Op 12 . + CDS 28757 - 29365 765 ## LC705_00882 phage-related major tail protein + Prom 29527 - 29586 2.3 51 15 Tu 1 . + CDS 29681 - 30094 240 ## LC705_00883 hypothetical protein 52 16 Op 1 . + CDS 30217 - 35070 3065 ## COG5283 Phage-related tail protein 53 16 Op 2 . + CDS 35071 - 36984 813 ## LC705_00885 phage-related tail component 54 16 Op 3 . + CDS 36985 - 39510 1440 ## LC705_00886 phage-related tail-host interaction protein 55 16 Op 4 . + CDS 39526 - 39855 185 ## LC705_00887 hypothetical protein 56 16 Op 5 . + CDS 39852 - 39995 127 ## gi|229551683|ref|ZP_04440408.1| conserved hypothetical protein 57 16 Op 6 . + CDS 40027 - 40326 169 ## LCABL_13450 hypothetical protein 58 16 Op 7 . + CDS 40341 - 40775 477 ## COG5546 Small integral membrane protein 59 16 Op 8 . + CDS 40775 - 41896 867 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) + Term 41905 - 41962 11.0 + TRNA 42722 - 42797 90.1 # Val TAC 0 0 - Term 42879 - 42920 4.3 60 17 Tu 1 . - CDS 42948 - 43601 534 ## LGG_00841 hypothetical protein - Prom 43621 - 43680 8.2 + Prom 43625 - 43684 7.1 61 18 Tu 1 . + CDS 43780 - 44964 1213 ## COG0192 S-adenosylmethionine synthetase + Term 44981 - 45019 -0.0 Predicted protein(s) >gi|225002538|gb|ACIZ01000041.1| GENE 1 220 - 1347 704 375 aa, chain - ## HITS:1 COG:L47248 KEGG:ns NR:ns ## COG: L47248 COG0582 # Protein_GI_number: 15672418 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 359 1 358 377 218 35.0 1e-56 MASISKRGKKWQYRVSYKDNDGTRKYVNKGGFPSKKAADIAATEVERQHNRGANLDLNKI TLIDYWDKWIELYKSGKHSRITEARYKTIRKQLLAYWGESRELKSISKSDWQAFINEFGK KRAKDTVSKLNGYVRSMADSAVDDQIIYTNFTHNVVLTGNEGQAGIIKYLQVKDLRKLVN YCLEFADYEHIAYYIIATGALTGARYSEVLGLTWDHVDLKKRVVHITRTWDHRYGSGFAA TKNKSSVRDIDITRELADLLLRLKKEQQEVYLAQGYRDSKQLLFRSIRHNMLSSTAINKD LRTIEKTLDISPAITFHGLRHTHVSYLIANHVDINYISKRLGHANTMITQKVYAHLLEDQ RKEQVSQTLQALSRL >gi|225002538|gb|ACIZ01000041.1| GENE 2 1455 - 1718 249 87 aa, chain - ## HITS:1 COG:no KEGG:LC705_00836 NR:ns ## KEGG: LC705_00836 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 87 1 87 87 134 93.0 9e-31 MKPVTVSSYKFGEKTWKNFEGEPIKKYEHSVLLDISNTEVFSDKEKAELNYKIVVPFSRI REKRFIKDIPLSNVNEALNKKKAGRRK >gi|225002538|gb|ACIZ01000041.1| GENE 3 1879 - 2100 300 73 aa, chain + ## HITS:1 COG:no KEGG:LCABL_10810 NR:ns ## KEGG: LCABL_10810 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 3 73 6 76 76 97 67.0 1e-19 MENGIYIVDEKDEVWDIDEASGMYGMFSSKPNIGPNEVAALLSGKALVDLSDGEYIHWIQ LTPDAIKTARLQQ >gi|225002538|gb|ACIZ01000041.1| GENE 4 2168 - 2275 138 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKKIVAILLIVLLAGATTACASDQDDDQDVEQFN >gi|225002538|gb|ACIZ01000041.1| GENE 5 2397 - 3023 308 208 aa, chain - ## HITS:1 COG:no KEGG:Sca_0786 NR:ns ## KEGG: Sca_0786 # Name: not_defined # Def: hypothetical protein # Organism: S.carnosus # Pathway: not_defined # 35 207 76 245 245 80 31.0 3e-14 MKNKLSVQHFLLVLGTVLVAVIAIFITPATLAQAKAAETTLIPGTYTVGGELKSGRYTVS STSGTGNFLNQPKKSNGQDVNEILGSDEYATTSAVTATFKKGDQVEISGMTSAHFVPVTS RNKKNTSSLGTGYWTVGKDIKKGKYTVSPAAGTSGNFFVQPKSLFGTEINEVLGSDSSAG QVPKVNVNLKKGDTVIIRGMPSVSFTKR >gi|225002538|gb|ACIZ01000041.1| GENE 6 3076 - 3858 573 260 aa, chain - ## HITS:1 COG:SPy1861 KEGG:ns NR:ns ## COG: SPy1861 COG1396 # Protein_GI_number: 15675680 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 2 66 8 73 124 71 53.0 2e-12 MFAKNLKYLRAKRGYDQQTFAEMIHRSVSTVSEWESGKYTPKAGILADIANMFGVKLDDM MNKDLSKSVDNTVIEKTTNTMRKLHPVRQQKVYTYAEKQLNEQQNPDNVVSLDEAHAERN LDEQVFNVEVDGIVAAGYGAFNDDRYEPMDTVKIPDSAIPSHYDYCFKVVGDSMSPYYED GEFVFVQKTQDVTNGMIAVVDIDDMTFIKKLILEQDRLCLRSLNDDVDEETGKRIYPDFY ADDTDNIEVIGKVVGSYAFK >gi|225002538|gb|ACIZ01000041.1| GENE 7 4019 - 4273 291 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551635|ref|ZP_04440360.1| ## NR: gi|229551635|ref|ZP_04440360.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 84 1 84 84 156 100.0 4e-37 MNEKSEKFTLRQWRGIRDMRVNELATESGLTVKTINNYERDIDRLRGASYKNLEAIAKAL GISVGDIFLSPTSEKPKYPVKEAV >gi|225002538|gb|ACIZ01000041.1| GENE 8 4276 - 5037 618 253 aa, chain + ## HITS:1 COG:SPy0946_2 KEGG:ns NR:ns ## COG: SPy0946_2 COG3645 # Protein_GI_number: 15674964 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Streptococcus pyogenes M1 GAS # 132 249 5 122 127 167 68.0 2e-41 MNELQLFQFEDNQIRTVSSNGIIWFAAVDVTDALGIKNPSDAIKPLDEDERTRFNLGRQG SANFISEPGLYKLIGASRKPAAKRFNRWVTHEVLPSIRKHGAYMTPETIEKAIYNPDFII NLATQLKDEQAKTAALTADNETMKPKALFADAVATSNTTILVGDLAKVLKQNGVDIGAKR LFAWLREQGYLIKRIGADYNSPTQRAMELGLFEVKETAISHSDGHVTVQKTPKVTGKGQQ YFINKFLQKGMTV >gi|225002538|gb|ACIZ01000041.1| GENE 9 5134 - 5325 130 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVIMNIMLAVFCFATAIGVLPVIAIAVYSIVKFHDWMSIPGLIACVFGVPAMIIAGLYVL HTL >gi|225002538|gb|ACIZ01000041.1| GENE 10 5291 - 5881 304 196 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551637|ref|ZP_04440362.1| ## NR: gi|229551637|ref|ZP_04440362.1| hypothetical protein HMPREF0539_0893 [Lactobacillus rhamnosus LMS2-1] # 1 196 1 196 196 387 100.0 1e-106 MNEFFKIATFAFTLITVAFLLLDHIKRYLSSRVRFNLILSDFEVLEEAQVVKMDMVIVNH SSSNLAIIAMYYLEDGSEDTIKGLFPPNWSSRYVAPIDETSKYFKKLSKEDKLVIGNAGG MALGKREYKWVGLPELDTFPINMNGYSAIDLNLSFQASGMRHLFDPGLMKHTFLVITSRG VFKKTFTAYAARIIQQ >gi|225002538|gb|ACIZ01000041.1| GENE 11 5946 - 6302 356 118 aa, chain + ## HITS:1 COG:no KEGG:LC705_00845 NR:ns ## KEGG: LC705_00845 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 118 1 118 118 219 96.0 2e-56 MELLQIVENKQISSKKYLAVDEEELTKMIKENQELKRKLAARGMWTLTTATSYVEGHNNT WVVNNILNVPRFHKFLQDTVVSYPPPGKKGYLFNPKPWLDFLDKWFPEISRSLREKGK >gi|225002538|gb|ACIZ01000041.1| GENE 12 6302 - 6394 62 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIEYLLIGGAFGVIIGHCLGHSGNWRQWIE >gi|225002538|gb|ACIZ01000041.1| GENE 13 6387 - 6539 73 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551639|ref|ZP_04440364.1| ## NR: gi|229551639|ref|ZP_04440364.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 50 1 50 50 75 100.0 1e-12 MNEAERTIGDLMNEHNKLTLDIMRGNHTPIAKMLLAENEKLRARLAKLRG >gi|225002538|gb|ACIZ01000041.1| GENE 14 6544 - 6747 267 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551640|ref|ZP_04440365.1| ## NR: gi|229551640|ref|ZP_04440365.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 67 2 68 68 111 100.0 1e-23 MTNEEYERILAEANRQIAKYHKVATDYGTNNTDPHQTYAMGQEDGAHAILFIIKQAMKKA AGVQTND >gi|225002538|gb|ACIZ01000041.1| GENE 15 6766 - 7251 522 161 aa, chain + ## HITS:1 COG:no KEGG:LCABL_10930 NR:ns ## KEGG: LCABL_10930 # Name: ORF28 # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 152 1 155 164 100 42.0 1e-20 MSVLYDLTDKLTSLQRLAESGKADPKAIADTMEMVEGDFDDKAVGYVKVYKSIEADVKEI DAEIRRLQERKTSAKKNAATIKSRLAQAMVETGREHIHTPLFSIYTRRTVSVEAPEDPNK LPPEFIKTTLTVNKSDLKKALQAGREVPNARLVENIGLGVR >gi|225002538|gb|ACIZ01000041.1| GENE 16 7252 - 7959 383 235 aa, chain + ## HITS:1 COG:no KEGG:llmg_0805 NR:ns ## KEGG: llmg_0805 # Name: ps315 # Def: hypothetical protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 4 235 5 235 239 261 55.0 2e-68 MQPIKHASSIDRTKNWRVLIYGKPGVGKTSAIRNLNGKTLVLDLDDSSKVLSGAPNIDVQ PFDRSKPSKEWKEFLKNLAERVSGYDNLVIDNVSAFEKDWFVEMGKHSKNGIGNELQDYS RWTNYFARIMTMIFMDAPVNVLVTAWENTRDITSETGQSFSQYAPAIRDSVRDGLLGLTD VVGRVVVNPKTDGRGVILEGTDAIFAKNRLDNRKLVPIKELFKFGNQEKSIKQED >gi|225002538|gb|ACIZ01000041.1| GENE 17 7963 - 8520 614 185 aa, chain + ## HITS:1 COG:no KEGG:SAK_0618 NR:ns ## KEGG: SAK_0618 # Name: not_defined # Def: hypothetical protein # Organism: S.agalactiae_A909 # Pathway: not_defined # 4 141 5 143 160 84 35.0 2e-15 MAITMDYSQAAEGNGDIQDGVYECVINRFGFDNYKDREFIKFDLIVRNDVPQKYQNKHIF DNQYPKKDTGEYAMGYLFMIGKNAGIPDHKKWADLAAMLADFTGHAVKVTVKNEEYNGKT YPHIKKWEPTAFPQIQHRWKDSKAASASNSNPSFGTQAQANQTNAADPFANNGQPIDISD DDLPF >gi|225002538|gb|ACIZ01000041.1| GENE 18 8537 - 9370 747 277 aa, chain + ## HITS:1 COG:no KEGG:LVIS_1129 NR:ns ## KEGG: LVIS_1129 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 1 221 1 218 250 132 39.0 1e-29 MNESPSYYAIIPAGVRYDKQLPQGAKLLYSEITALSSKSGSCWASDQYFMTLYEVGQTTI QRWLRALEDSGYIERHVKYKDGTKEIEKRYIKIRTDPMPENGNTYSQKRVYPMPKNGQEN NTSINKNIRASSTLESDFEKLWKLYPKKIGKKPALAAYKRVISRKKNPATNRQIQDGIVA YRQLINSKGTEKRFVKDGSTFFNQESWNDYLEVVKEERDEQEARKPKFDPKKTAIAMYID YNSPERVLEEIKAQGIPINPEDAKRYIAEYDERRQQA >gi|225002538|gb|ACIZ01000041.1| GENE 19 9367 - 10629 740 420 aa, chain + ## HITS:1 COG:XF0361 KEGG:ns NR:ns ## COG: XF0361 COG0305 # Protein_GI_number: 15836963 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Xylella fastidiosa 9a5c # 143 416 187 459 471 150 33.0 6e-36 MTKKLYDPSNPEPHVMYGLYTKPELIKSEWIDPKWFNSQQYAAVVAYMNKLPGDVDTLEL QDGFDTAHPGVMSAADWQYIMTSDFGTSRFDWWVGKLKRDYFRSQLIKAAQAYSEEPSED NLTAMMVASQNATAASQTVTESSIADLAAAMEDKMLHGATDNGIKTYFTLNNILGGGLMP GRLLTIGARPGVGKSAFAVNIIIEALKQQPELTVDMFSLEMSNAENYNRLLACKTGISAG KFINPQKSLSDAEKVEVEKAGNVLKDYHLQLYDKQVELPQIVKTMRQRAADADKGYLAIV DYLGLIGVRSQSDRRLQIEEITRQFKVLTNELGIPIVLLSQLSRGIENRQDKQPVLSDLR ESGSIEQDSNAVGFLWNSDRQNEKSDIRTVTLTIAKNREGALGSIDFRFFAPKLQFKVAY >gi|225002538|gb|ACIZ01000041.1| GENE 20 10631 - 10975 186 114 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551646|ref|ZP_04440371.1| ## NR: gi|229551646|ref|ZP_04440371.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 114 1 114 114 200 100.0 2e-50 MAYPTMTLKEFNEYMQEGHYQYSLFVILQLDEAAEYLKKAQQADTGMKKFWCQWAYVTLV NALETAESEYYGETSAYLPTKETDPVTRAYCQNTYDIWRGYLQKLNVSLPEQKF >gi|225002538|gb|ACIZ01000041.1| GENE 21 11017 - 11430 96 137 aa, chain + ## HITS:1 COG:BS_yqaN KEGG:ns NR:ns ## COG: BS_yqaN COG4570 # Protein_GI_number: 16079678 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Bacillus subtilis # 2 136 4 140 142 108 45.0 3e-24 MIRLTIPGEPVAQGRPRFSRRGKYVSTYDPPKSRGYKEYIKQIARQELHIEPLTGSIRIN VKVYRGIQKSGSKLTRRKKQDGIIRPTVKPDTDNYYKAVSDALTGILWEDDNQIVEIHVG KWYSDQPRVEIEAEEID >gi|225002538|gb|ACIZ01000041.1| GENE 22 11444 - 11779 366 111 aa, chain + ## HITS:1 COG:no KEGG:LGG_01113 NR:ns ## KEGG: LGG_01113 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 58 107 101 150 154 74 96.0 1e-12 MNSIRIQNGKVFVNGIEVGQVEKIHFKAEANDPVEVEMKWLVPVRGLDVSVYQPEPRQQQ PEVDAKQQTINDLTSQLEAAKQANNDLSQAIKDAQSIKDYSDQAVKSAKGH >gi|225002538|gb|ACIZ01000041.1| GENE 23 11791 - 12642 258 283 aa, chain + ## HITS:1 COG:all7369 KEGG:ns NR:ns ## COG: all7369 COG0270 # Protein_GI_number: 17233385 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Nostoc sp. PCC 7120 # 1 165 1 164 253 89 34.0 8e-18 MRSLELFAGIGGIALAEQMAGIEVAGLCEYADYPRTILQKHWPDVPLFKDVTKLDREELT NAGISPDSIDIVSGGFPCQPFSIAGHRKGTKDDRDLWPEMFRIIKQIWPTWVVGENVANF ANMELDRTLSDLEGAGYQARAFVLPACAVNAPHQRLRTFIVAHADSKRYFYREPEKQPAE DRQSPFSNVATSGENVLANSDGNRWEKSKPVFKQKFSQRKSEREPSTTSSTPAKWQPEPS VGRVADGVPNRLDRIKALGNAVVPQQILPIFKAIVQIEDIKND >gi|225002538|gb|ACIZ01000041.1| GENE 24 12635 - 13351 397 238 aa, chain + ## HITS:1 COG:SPy0676 KEGG:ns NR:ns ## COG: SPy0676 COG0286 # Protein_GI_number: 15674741 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 10 216 5 208 211 229 50.0 3e-60 MTKKIVFTADIVHKLLGVREAQQAPAALMKIVMDQQRRNELFKQFLDVSTDVSHDWFSEY FMSVQADRKDKKQDFTPESISMLVNMLVGSNDSSEYYEVAAGTGSMMIQRWQQDRLKHKP WDYRPSMYFYHLEELGDSTLPFLIFNCAIRGMNATIVHGDSLTRAARQVYFIQNDEDDYL HFSTVNVMPHSKDVEQEFDIRQWLEPEQNHIESTEIPARYNEAIQKLAAGKEDKLEEK >gi|225002538|gb|ACIZ01000041.1| GENE 25 13338 - 14261 471 307 aa, chain + ## HITS:1 COG:lin0524 KEGG:ns NR:ns ## COG: lin0524 COG0582 # Protein_GI_number: 16799599 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 2 307 5 308 309 295 49.0 8e-80 MKRNEQLFQTYFKKWIETYKQNYVTPVTYRKWENTERMLKLLAPQLKVTQLTRRSYQQIL SQYAETHEHQTCMDFHHQLKCVIQDILDEGLIKRDPTLRAVIGGTRHREHKIKFLQPEEL EKLLQDLNLGKELDYDYMILLLAKTGLRFAEALGLTPADFDLDSLTLRINKTWDYKSATG KFAPTKNKSSVRTIALDYKTAAKFAMLIQSLPKDKPIFVPDGKRIYNETINDILKRHCEN AGIPVISAHGLRHTHASLLIGKGINLQAVAKRLGHSSSLTTQKVYIHLLKDTETSADAKI GQLMAAL >gi|225002538|gb|ACIZ01000041.1| GENE 26 14272 - 14880 -11 202 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551652|ref|ZP_04440377.1| ## NR: gi|229551652|ref|ZP_04440377.1| hypothetical protein HMPREF0539_0908 [Lactobacillus rhamnosus LMS2-1] # 1 202 1 202 202 356 100.0 5e-97 MTTGRINKHWTKEELERFNDEAILAADTNAVLNFDELAEMFGRTVSGVKHVANKLRREGK MPKYDRNNQQDKYRSFYSEKEKKMIASLVADHYSFEEIARITGRTKFSIAHFWRKHGHPL ARSWSSEEESLLLDIIKFDRYGVVTNYKELQEILNRQYNSIRVEVYKLRKRGKLQRAERN GMPEEKREEFKRYVHRFFVKSV >gi|225002538|gb|ACIZ01000041.1| GENE 27 14893 - 15018 190 41 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551653|ref|ZP_04440378.1| ## NR: gi|229551653|ref|ZP_04440378.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 41 1 41 41 62 100.0 1e-08 MKTGDDTFDDIYISKKTGKVVGVMYEGLDYKLVPIKQEDEK >gi|225002538|gb|ACIZ01000041.1| GENE 28 15015 - 15530 477 171 aa, chain + ## HITS:1 COG:no KEGG:LGG_01115 NR:ns ## KEGG: LGG_01115 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 171 1 168 168 258 83.0 5e-68 MSEEKIYLIKNDHGEYLTVERTAPWWNSPVGTAVRNIDVALAWAEKYGGHVVTLVEEPEK VVLSKEQAKIVEEANKYKFPASYISMNTDDYDGLEKLLMNAYVNGYTVAKEKKYNVKVPH TKEVWYYKSGDTDLLTIFPADKELRGKFTESEIEHYGLQDCEKEEVTDDDD >gi|225002538|gb|ACIZ01000041.1| GENE 29 15520 - 15810 310 96 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551655|ref|ZP_04440380.1| ## NR: gi|229551655|ref|ZP_04440380.1| hypothetical protein HMPREF0539_0911 [Lactobacillus rhamnosus LMS2-1] # 1 96 1 96 96 189 100.0 4e-47 MMIKLDSGDYVNTDFIERLWMINEHDGFIRLANSPDVPISENDRGLILKAMKPKIMLTLG ESGKLKPTIYHEGGTDYGAMAFSPLIHDHEVTDDEQ >gi|225002538|gb|ACIZ01000041.1| GENE 30 15863 - 16168 350 101 aa, chain + ## HITS:1 COG:no KEGG:LGG_01117 NR:ns ## KEGG: LGG_01117 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 16 101 35 120 120 147 88.0 1e-34 MYDPETIEPKELIEQDYQDWIREYDAALPDNLPVIPKAVGDVIVKLKHKKFSLSGAMSYA AVVSLSPWMTFEHEDTFALAWVLGVWRVEETGEIVKLEAEK >gi|225002538|gb|ACIZ01000041.1| GENE 31 16165 - 16353 214 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|199598949|ref|ZP_03212358.1| ## NR: gi|199598949|ref|ZP_03212358.1| hypothetical protein LRH_06831 [Lactobacillus rhamnosus HN001] # 1 62 1 62 62 106 96.0 4e-22 MSQLERTDKKMKFKIVGRNGETKIKEFESQYEADLYCERLNYERLERLGLIEHLNMPAIK FD >gi|225002538|gb|ACIZ01000041.1| GENE 32 16483 - 16701 203 72 aa, chain + ## HITS:1 COG:no KEGG:LSEI_1942 NR:ns ## KEGG: LSEI_1942 # Name: not_defined # Def: transcriptional regulator # Organism: L.casei # Pathway: not_defined # 1 72 1 72 72 127 87.0 1e-28 MDSKRALAENLRQNIYDLNMTQAKYAEDIGIPLNTLEYAVSGRGSVSLNTLDKIAQGAGL DPWELIRPPEDK >gi|225002538|gb|ACIZ01000041.1| GENE 33 16911 - 17210 110 99 aa, chain + ## HITS:1 COG:no KEGG:LSEI_0514 NR:ns ## KEGG: LSEI_0514 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 94 46 139 147 111 59.0 1e-23 MDGMPKSPSYGNKAEDKLVSHAEELRYVACCEKAIRSVELEKYRIILTETYLVSLDKRKP WWLIAEELHLSKSAYYRDLKEALLAFSDWCELVEQPHKI >gi|225002538|gb|ACIZ01000041.1| GENE 34 17544 - 18209 217 221 aa, chain + ## HITS:1 COG:no KEGG:LC705_00865 NR:ns ## KEGG: LC705_00865 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 221 1 221 221 365 99.0 1e-100 MKLPLYERIGDFVLGIFHVMKTKWDKIIPIIISIVSVAISLNTWNSYRTANEEYMQRSNQ ALVNSSKLAETDIDILTGKVAESDHIAVTKNQIDYQIYSLKQNLKVIEDIQITRLPQRNS MNYQVYRKDLADVIYRLNAKVTELFENKKYKQSFYLTAGDREDFMNSLAVVRRVLLDDRN ALQKRNDLATKYLKFNQKFQEKNGKDLNERVSGDLNVYGGK >gi|225002538|gb|ACIZ01000041.1| GENE 35 18852 - 20000 611 382 aa, chain + ## HITS:1 COG:no KEGG:LGG_01121 NR:ns ## KEGG: LGG_01121 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 382 1 382 382 756 98.0 0 MQWTDEQISDIRKLASEGFTRRETADKLGISYDALQGKAKRLGIEFQKPLKNEYDSDGTQ SSETIIKVVRGHKMTPREVLEAHGYDYTKWELVRATSNFWKQTPEATLYQSKIQIRPLVE AEQYESLMNDIITHKEPYQAKAPIFVESDRYLVIPAFDTHFNGHTFDLYAESLKRQLEII QRGHYAKILLILGGDLAHVDNINSTTAKGTQLETTDLGETVNEMEQYFETLIEAIIKNAN ECEVMYAPGNHDPSVGYMFARLLKRAYSNQSNITWDISLKHYKGTMLGHNFIGATHGDKG KNNYLAKYLDEFGFMLGTAQNRELFTGHLHSEMSKDLGGFVQRQVSTRKPTDKWTDDIGV VAHKTFELVEYSDHDTRAIYYV >gi|225002538|gb|ACIZ01000041.1| GENE 36 20155 - 20319 159 54 aa, chain + ## HITS:1 COG:no KEGG:LSEI_0520 NR:ns ## KEGG: LSEI_0520 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 53 57 109 111 99 86.0 4e-20 MPVSTITADADDYERFLKLGYRSMPVVKVYKADGTHDEWCDLQVDKIKQYTEAI >gi|225002538|gb|ACIZ01000041.1| GENE 37 20321 - 20485 107 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCNFLLLLTLIFVMAKLFGLIAWSWLLVFAPLIVMIALLALFILFGIIIRLHEG >gi|225002538|gb|ACIZ01000041.1| GENE 38 20522 - 21331 358 269 aa, chain + ## HITS:1 COG:no KEGG:LC705_00870 NR:ns ## KEGG: LC705_00870 # Name: not_defined # Def: phage-related terminase small subunit # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 264 1 264 264 485 95.0 1e-136 MPSKKLAFINGRPQLVDANARVRSEADRQYNRVRNEQQSDYLRFYHSNEWKQLREQILIR DNSLCQRCGLQASLVDHIVPSEDDWEDRTKADNLQALCRDCHYWKTRRETTKRKKGQHRA MKITVIVGYPASGKSTYVKRHQGQHDLVYDYDHLMAALTGLPLHQGNIDANDYVQLIYEL ILRKLKAEQTFDHVWLVMTYPDEKLDTLLASRDVEHILIDTDRDTCIQRLSKQGRDVSQL IKVMNKLDEMKSENKFAKFKKIKNKNYKN >gi|225002538|gb|ACIZ01000041.1| GENE 39 21527 - 21982 357 151 aa, chain + ## HITS:1 COG:no KEGG:LC705_00871 NR:ns ## KEGG: LC705_00871 # Name: not_defined # Def: phage-related terminase small subunit # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 151 1 151 151 280 100.0 1e-74 MAGKYKVLQMSKGDLTKERQEAKLHAELMAKDGIPKLQVTPPNHLDPVAKQEYKRIIESL GTLPLRNLDRAELENYCTWYSVYKNTSVNMKLALKNGDQDEYYAYISTLNKATASIKSLA SDLGLNVNSRMQMNMPKTEAQKNDSIIDTFG >gi|225002538|gb|ACIZ01000041.1| GENE 40 22004 - 23716 1000 570 aa, chain + ## HITS:1 COG:L64491 KEGG:ns NR:ns ## COG: L64491 COG4626 # Protein_GI_number: 15672451 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Lactococcus lactis # 6 545 14 563 604 273 31.0 1e-72 MSKFKDPMPNFIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWRYDPNLAGKAVKFMEI LPEPKSGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILY EFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLD DGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGF DMNVPMFQQNYPYAKKVLSGEETAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDIVHD QITDYLTTKLSQAHADGSLNAKLVKNFNIWRQATEDSYLDFDAWKDAELSEKPDIRGKRA WIGIDVGRTSDLFAITWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHSEGE ISSLESGIIDNDRVYEWLEDFIERNDLDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQ GTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKIDMID ATLDAYAIAFKEDLDNYLDDDRVFSDDFGF >gi|225002538|gb|ACIZ01000041.1| GENE 41 23728 - 23919 113 63 aa, chain + ## HITS:1 COG:no KEGG:LC705_00873 NR:ns ## KEGG: LC705_00873 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 63 1 63 63 94 100.0 1e-18 MNGKLANFFRILGANMAGIATVLGFILAGYGAFLINRPTGFMVCGGLLFVLAFILLLPDN EGR >gi|225002538|gb|ACIZ01000041.1| GENE 42 23925 - 25178 727 417 aa, chain + ## HITS:1 COG:L66478 KEGG:ns NR:ns ## COG: L66478 COG4695 # Protein_GI_number: 15672452 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 37 316 39 311 359 98 29.0 2e-20 MKLFRGLATEVDPHWADHLLDSGVIPSFRGGYLGISALRNSDVLTAVSIVAGDVSRFPLV ITDRETDEVIDLSNIDYLMNTKVNKRLSAYQWKFSMMVNAILTGNAYSRIVRDPITSEPA LLEFYAPSQTQVDTSDPDNIVYRFTPYNSTMQKICSFEDVIHWKFFSYDTIMGRSPLLSL GDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRLSAEARQKIREDFERAQAGADAGSPIV VDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQNSPNQSVKQLADDYIRN DLPFYFEPITSEFELKLLDDTQRHQYCIGFDTKSVNGLPIADVNTAVNGGLWTGNEGRAE LGKKPLKDQNMDRIQSTLNTVFLDQKEAYQAEHASQLKGGDANGKGTTNDGNTNANS >gi|225002538|gb|ACIZ01000041.1| GENE 43 25132 - 25761 642 209 aa, chain + ## HITS:1 COG:L67524 KEGG:ns NR:ns ## COG: L67524 COG3740 # Protein_GI_number: 15672453 # Func_class: R General function prediction only # Function: Phage head maturation protease # Organism: Lactococcus lactis # 25 177 28 171 195 110 41.0 3e-24 MAKELRMTATPMQIRDGDDNHPAVIEGYALKFDRQSEIMGSGELSFRERIAPHALDNADM SNVVALFNHDQNQVLGRTGVNLELTVDETGLKYTLTPPDTQLGRDLLENVRRGIISQSSF AFTIAPDKDAQKWQKSSERGVKYERTINNIDHLFDVSPVTTPAYPDTEVKVGARSLEQIK ALDQPPEWELKRRKMLYQLNKEELLKGIE >gi|225002538|gb|ACIZ01000041.1| GENE 44 25803 - 27005 1095 400 aa, chain + ## HITS:1 COG:no KEGG:LC705_00876 NR:ns ## KEGG: LC705_00876 # Name: not_defined # Def: phage-related major head protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 400 1 400 400 729 98.0 0 MTLDEKLAAVKKQLDEKRSALPAMKTELRSLLEGEDSEENLKKAEGVRAKYDKAGKEIKD LEEKRDLYEAALKGNEQPSGKKPNHPEEHSYRDALNAYLHTRGRNTDGVNFEKTEAGEFA IFRADPTDASDAVNAGVKAADAAVTIPETISNNPQRELQTVVDLKPFTNVFQASTQKGTY PTVANATTKMATVAELEKNPAMAKPDFKSIDWSVETYRQALPVSQESIDDSAIDLVGLIA QNAQQIKVNTTNSAVATLLKSFTAKTISSIDDLKHINNVDLDPAYSRAIIASQSFYNFLD TVKDGNGRYLLQDSILTPSGKSVLGMPIVVVSDDTLGAAGEAHAFLGDIKRAILFANRAD FMVRWTDDQIHGQYLQAGMRFGVSVADEKAGYFLTYTPKA >gi|225002538|gb|ACIZ01000041.1| GENE 45 27017 - 27262 156 81 aa, chain + ## HITS:1 COG:no KEGG:LC705_00877 NR:ns ## KEGG: LC705_00877 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 3 81 1 79 79 80 98.0 1e-14 MTLSQKTFTGGVGATKDITVTVTPDGAPQAVEAVSSDESVATVVKKSDGVYTITNLAAGT ATITFSTNGISSTLAVTVNAG >gi|225002538|gb|ACIZ01000041.1| GENE 46 27273 - 27632 198 119 aa, chain + ## HITS:1 COG:no KEGG:LC705_00878 NR:ns ## KEGG: LC705_00878 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 119 1 119 119 215 99.0 4e-55 MADTTLDKSPLTDEQFQVLKMYLKVDQTIEDPMIMQLVHDACGEISSAISFGSNPEQFLS NPETRDRFFTALMKQVKEDYDYRGMGAEVMRFPLQTSTTNIINQLRSELPEEDGDSDAN >gi|225002538|gb|ACIZ01000041.1| GENE 47 27622 - 27951 282 109 aa, chain + ## HITS:1 COG:no KEGG:LC705_00879 NR:ns ## KEGG: LC705_00879 # Name: not_defined # Def: phage-related head-tail joining protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 109 38 146 146 210 99.0 1e-53 MRTNRMTERIAFVSYESKKVNGVPVDGVLVKHMTVWAEVPKVPIREANDPQTKLGTRKDS PTFLVRFLTAEEIQPTWRIQWRGNEYQITGLDPDYERRDLTTITAKAVS >gi|225002538|gb|ACIZ01000041.1| GENE 48 27951 - 28337 260 128 aa, chain + ## HITS:1 COG:no KEGG:LC705_00880 NR:ns ## KEGG: LC705_00880 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 128 1 128 128 241 96.0 4e-63 MGVKVTGDAELLANLNKLQFGVAKEARAAVRDGAQKFADKLKSNTPEWDGETDMSGHLRD DIQLSSVRETSGVTEVDVGYGKDTGWRAHFPNSGTSLQNPQHFIEETQEVMRPVVIATFL SHLKEGGM >gi|225002538|gb|ACIZ01000041.1| GENE 49 28337 - 28723 187 128 aa, chain + ## HITS:1 COG:no KEGG:LC705_00881 NR:ns ## KEGG: LC705_00881 # Name: not_defined # Def: phage-related head-to-tail joining protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 128 1 128 128 238 96.0 4e-62 MAPEKRVYDILSANLDIADKVYIGTPDFNNQTSVTPESLAPWVRITSLPGDAADYADDSR ILEYPKVQVDFWVDNTDWDQEEKIETQIYQALHAAGWERYYRNSYVDGDTPALRMTTGYF QFQGLPIG >gi|225002538|gb|ACIZ01000041.1| GENE 50 28757 - 29365 765 202 aa, chain + ## HITS:1 COG:no KEGG:LC705_00882 NR:ns ## KEGG: LC705_00882 # Name: not_defined # Def: phage-related major tail protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 200 1 200 205 365 98.0 1e-100 MADTAVTTNKKLAKFGASAFEYGVVGDDDFVPSTRKIQGLSSVKLDIKTEQKTLSADDGP YLILSGGITEATETIEMYDVDSQMKSDLFGIKVVNGVEVYPKNLSPNYAATLFRTKLSNG KYVWVGMLKGMFSLPGVDTKTVDGTPDPSADSIEGSFIPRGDQDTGNVVLIGREDNDGFD FDTFHGYVFPKTAEDATIAPKA >gi|225002538|gb|ACIZ01000041.1| GENE 51 29681 - 30094 240 137 aa, chain + ## HITS:1 COG:no KEGG:LC705_00883 NR:ns ## KEGG: LC705_00883 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 137 1 137 137 209 97.0 2e-53 MAYQIKLNIKGETCVFTRNGEPTLRDTTNALKVQQQQLRMLNRKDGPSNDDYDENEKNLA KFAVDFWKNQFTTDDVIDGSSISLKSLDSINDAIGDSLSDGEENEKGTAKKSPKRTSKKP LATLTTSTKQGSLKATD >gi|225002538|gb|ACIZ01000041.1| GENE 52 30217 - 35070 3065 1617 aa, chain + ## HITS:1 COG:lin2383 KEGG:ns NR:ns ## COG: lin2383 COG5283 # Protein_GI_number: 16801446 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Listeria innocua # 151 1086 65 980 1601 332 28.0 3e-90 MLGNLGQIAATVSLNIDPFQVSQRVLNSSIKATAAELRAQDAAFKGSEKSINNMRSTYDT LSRQSKNYQAQLQKQRKQYDENSKAVERLNKSETASQEEINRATKLQANAASQYNRTAAA AAQNENRMAALRKEIALQSDGWTKVSNGASKFATATGKIGSKLTGFGSKMTATVTAPLAV GFAAAAKSAIDFNSQIDAIGPLLTNGAAVTGKFKAQLNQMADASKKWSVQYGISTTQINQ GLADLVRAGYDANQSMKMMPAILDASRASGDDFNTTMDVVTSTMTQFNVKAGNVSKVTDA MTYAANATKSGFGDMGEAMQYTGQSANAAGISLNETVAAIGLLSNAGLQGSMAGTAFNAM LQKLAGASEKADSPMSALGVNVAAFKKGTIGLPEVIDQVTQKTKGMSDAQKVAAVNAAFG ERGGRAMLALMNQGSSALVDLTNKTASAAGATKKVSDAMGNTAAANFNKLKSSIQVLGIE IGQNLLPALTPMIKTATQMVQAFGKLDSGTQQSIVKFALFAAVIGPISSSLGGMLNILKG GATVFASVTGGIGRAATAAKIGGTAMDVLKSGFSKTAFEALKVAPAAAAAAEGASGMGAA MGGAAASGTGLLAALGPIVPVVLGVTAVVGAGVAIWELWGKKALESADRTSRWGTDIGAD ADRSASKMKDASGEISGAFDDTNHTVTQNAKTISKGFNDLTKAAKEAADQSETAAKKLAK SLGGEAADNIEKQAAKEKAANAKRIKEMESNNKKAQAITASFNKSGAQMTADQYQLLDNY RRKNAALAVKTLQISGSQQNNVLKAVLGERTRMSKSAALEQYQDMWNAANKENSAYKSQQ AKINEEFKNDATMRHVALEGLERDHQNKMKSLYAGAIQAMKAQGTSRSEMLAELQTDFHL TASQAESAMNSYENAMAKGVKSNRDFAAATEGFGKAAQQAGDHWNNLVFDTKTGKVKTNL PEVLKDTASTKKGWKQLVFDLKYAKITSNAKQMIVEALASSEQWQKLSVPEKNAIIRTQG REQLADIMDKFVSWNSLSLKDQQVIVKGDYTPLVNALVKSGDWNNLTLKQQEAIVKDKAT VPLVSSLQQTGEWQKLDLKVQEAIVNAKGKKDLEDIIFDMGVWNKLPNTQKYATLVSFGK QDIADIIDQLNLWNTLTPKEIKAVAKGDTSSLIAAIDKANDWNRLTLGQLEAIVKDKASA GLVQAMIKAGEWNGLSIEEKTAIMQTKGKSDLADMVVKYGLWNSLPNSTKSLLMNDSDAR TKLEKAGVAIDQYNLFKNPNEKGLKANNTDVLGKTEEAKGSIQKYNEVLPGLKLFPADAS KVKHESSSGGTSIAKYNEVLPGLKLFPGDSSSVTNHAEKGKEEIGSFNATNPLMRFFQGN SGSVDGASKSGKSSITSFNSKVPIMMFFNGNADGVSSASQIGVNAVAAFGGNATITKTFR ISADIDPAVQRLLNSGKFARGTQNFTGGLATINDASGTRYQEVVTLPNGAKFVAYGRNVT LPLPRHTKIETAMQSARNYSIPRFAGGTTDFGGAANRINQLNPQTFVTSIYSGGNSRVED LLARLIELTIYQINHTQRTEGKVVLENNREIGKWLYPTINELDKQNTIRERHGRGVY >gi|225002538|gb|ACIZ01000041.1| GENE 53 35071 - 36984 813 637 aa, chain + ## HITS:1 COG:no KEGG:LC705_00885 NR:ns ## KEGG: LC705_00885 # Name: not_defined # Def: phage-related tail component # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 637 1 640 640 496 45.0 1e-138 MANLIFGGHKIGSSVLQFSAARGITSEIENTSQSVGISDGEMLINSRLKSRIIPVTYDFV ALSRREFERQLAPLLYSTDVQKLIIDDRPDEFWYAKVDGKIDMDRAYFLGTGTINFLVPD GIAHSVATKTFDNMPYKDVPVNLLKGTSSNNTGVVKANAHGIDGITLKKVPVDGGQTYVY TITFGDMGNTGHSSVNWYDASNNWISSQAGSDIPWVSEGGRFSTVFVAPSNAAYAELNPR YFSKTFPTDTSVSWTHEKLELGTSASPWSPNPADPGYYADTITVHNGGTYPVEPVITATM HADNGMVGLVNDRPGILQFGTQEIDGFITEESEVALDLAAVQGSHMDNQAATNNPYWGGD PSMPNEQIGNAIWTHDDYDGWKVEPNWPSITGDHKYWNGPSIKHNLVQTHNGNFKSNLTW DVMTRFQTGVAQVGALETTLESDGKPIFQMILKDNSALSDQLWWMCYYKGQLVVNEQLDR SIFTNDKFIQLELQKFGNSVVFRVSPWVGNRGRETTITRQFTFADAASVETKQFSAWFMR DKTWGESTMYLIASTVKWQNVSWYTNIKNRFSDGDVLKIDVANAKTYLNGSLDPTMHTLG NQWEQFKLPPGDTEIAITPSSWAQPFACEVEIREAWL >gi|225002538|gb|ACIZ01000041.1| GENE 54 36985 - 39510 1440 841 aa, chain + ## HITS:1 COG:no KEGG:LC705_00886 NR:ns ## KEGG: LC705_00886 # Name: not_defined # Def: phage-related tail-host interaction protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 840 1 833 833 780 55.0 0 MEYYFADRKSNILGVGSTDGKGEWRIDNDIETQSVDNRPAVELSLDIHFTTDQEQAVNEM AKATNFIMYQDEEGNAHQMVIESVDHDSLGHIHSIVASDAGNDLINETVGAFKADKPYTI ADYITRFTNDSGWEIGINEFPDNVRTLEWTSEESSLARIIAVAKDFDAVLSFGFEFVGTN LVKRVINIRHETAGDSLISFEMNKDINNIVTHLDTYDMETSIKAYGAVPESTNGSTNQDP INLIGYKWTDPTGQFVLDQYGFLHDTIAVQKYSRLLSNSNPNPTQSDWNRVKTFDSKSQA ELLQAALADLKKYNHPNETYDIDLVNSPYVPLNQTVHIADENQQLFLSAKVLSIQRSRAN HSVKLTLGEFAHETVSFDQRLSELANQMSNISKTVQYYPWLRYADDDKGTNMSAFPTGKK YMAIVWSNKSSVPSDNPADYAGKWALIKGEDGADGKDGVPGKPGADGKTPYFHIAYADSS DGKTNFSLDTPGSRKYIGSYTDFTQADSTNPAVYSWQLVQGPKGDTGPQGPQGPQGPQGP QGVPGSKDVPYTYIQLGTPTSPKKGDLWWHGTTLNDATALQYYNGSAWIDQSIQQAVLSI KKLQSIEVDTSTINSPDINSPFSHVQIDGAKSSGNLELKDANLSILGNIEDNNGNPNGQY YKSLFSPKGMFNYITTPDRKGIVSSVALQRGALQLQTLISDPSAATKKYIQSEFTSADNV TFFYVNTTALSNIDIDWAYIYYTRRGNLVTANFQIHTIANQYNFLRLADIRPGYKPYLTN KIVASCLSFSDPGQSTAMYSSTPSGGTVGWYSNISKAYGSYGGSVSYLTQDDYPTGDSYF A >gi|225002538|gb|ACIZ01000041.1| GENE 55 39526 - 39855 185 109 aa, chain + ## HITS:1 COG:no KEGG:LC705_00887 NR:ns ## KEGG: LC705_00887 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 73 1 72 95 74 47.0 1e-12 MKIKVWTDSNNRLLNWAYADENRPVGPTDEGFEVIEVDDAVGLYENHASVIDGQVVPDTG YDPDTASPTPEPSEADLANAETMKTVASLTVSNAALIKQVATLTKEAKS >gi|225002538|gb|ACIZ01000041.1| GENE 56 39852 - 39995 127 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551683|ref|ZP_04440408.1| ## NR: gi|229551683|ref|ZP_04440408.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 47 1 47 47 81 100.0 2e-14 MNAYKPLIISYYQQGIYNKDDLALFVSVGWISQAEVDELVKQVASKS >gi|225002538|gb|ACIZ01000041.1| GENE 57 40027 - 40326 169 99 aa, chain + ## HITS:1 COG:no KEGG:LCABL_13450 NR:ns ## KEGG: LCABL_13450 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 99 1 99 99 190 98.0 2e-47 MDFKSWIDMFVELGGGALFGWFASQWRMHRKHGKAIDSGLVGLLHHEVYMLCNHHIEVGY ISTDDLDDLNYLFSSYKALGGNGTGEALYNKVLQLRIKN >gi|225002538|gb|ACIZ01000041.1| GENE 58 40341 - 40775 477 144 aa, chain + ## HITS:1 COG:SA1760 KEGG:ns NR:ns ## COG: SA1760 COG5546 # Protein_GI_number: 15927522 # Func_class: S Function unknown # Function: Small integral membrane protein # Organism: Staphylococcus aureus N315 # 3 80 2 77 84 68 42.0 4e-12 MKINWKVRVLSVKFWLALVPAALLVVQTVAAVFGYNWDFANLGKELTAVINAVFALLTIV GVAVDPTTEGVSDSQQALAYPALITTKAAKIKALEDQIKALQADKETDQAALEAASSAAP AVAPASSAAPEPASAAPAASQEAK >gi|225002538|gb|ACIZ01000041.1| GENE 59 40775 - 41896 867 373 aa, chain + ## HITS:1 COG:mlr0125 KEGG:ns NR:ns ## COG: mlr0125 COG3757 # Protein_GI_number: 13470422 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Mesorhizobium loti # 1 209 103 312 317 67 26.0 5e-11 MVLHGIDVASYQQGIGISGMTADFVIAKATEGTTYLNPAFADQVKQTLTSGKLLGVYHFA SVGNARDQAAYFLSQVGAYVGKAVLVLDFEGPAVSQGVGWAKQWLDYVKAKTGVAPMIYM GLSDENRLDWSSVASTYGLWVAQYNNYNAVNGYQPRDMYGSTRNWPDPAIFQYTSVGRLS GWAGNLDLNVFYGDRAAWAAYAGQGASSLPTPPAPQLSVKKVNVSYGLHVLGGGWLDEVT NFGAGDNGFAGLPNHQHDLLYIKVDHGSVKYRVHTVKSGWLPWVTKGNRNDTVNGCAGIA GEAIDGVQIIFLTPAGESYQQAYYRSQTTQRAGWLGVVCDDGTSLPQYTDTYAGMFGEPL DRLQIGISSINPF >gi|225002538|gb|ACIZ01000041.1| GENE 60 42948 - 43601 534 217 aa, chain - ## HITS:1 COG:no KEGG:LGG_00841 NR:ns ## KEGG: LGG_00841 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 217 1 217 217 298 99.0 1e-79 MKKIDQSAYAIAFLGQALAYPFLIAMALQVNWTFQLVALLFMTICLAGTTLVSSNKLMLL LLIAGVSGIIGTINQWLLLPLIIVQIVIAFLLQTQKMPALWLDTVVFGQALLLQITLIYA SLHFFNRTMLLDLALLYLPALIGLWANRFPKWTDLILLLVVAILGYVQQRINFIAIGGMF IIVTVINSRRPFKLPRYIYQFSPLIMTLLLYLARMHG >gi|225002538|gb|ACIZ01000041.1| GENE 61 43780 - 44964 1213 394 aa, chain + ## HITS:1 COG:SPy1359 KEGG:ns NR:ns ## COG: SPy1359 COG0192 # Protein_GI_number: 15675292 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 391 1 392 398 547 71.0 1e-155 MQERHLFTSESVSEGHPDKIADQISDAILDAMLEKDPNSRVACETTVTTGLVLVVGEIST NAYVDIQSVVRGTIKKIGYTKESGFDPDSVGVLVALDEQSPDIAQGVDESLEARDSDTDP LDKIGAGDQGMMFGFAIDETDTYMPLPISLAHALMRQTDKLRHAGEISYLRPDAKAQVTV EYDDNEQPVRVDTVVLSVQHDPDVTLEEIRRDVEAKIIRKIIPADMMDDDTKIYVNPTGR FVLGGPQADSGLTGRKIIVDTYGGFARHGGGAFSGKDATKVDRSASYAARYIAKNIVAAG LAKRVEVQLAYAIGVAKPVSVSVNTFGTNVISEQVIEQAIRENFDLRPAGIIKMLDLKRP IYEQTAAYGHFGRTDVDLPWEHLDKVQALLKYRD Prediction of potential genes in microbial genomes Time: Wed May 25 19:42:59 2011 Seq name: gi|225002537|gb|ACIZ01000042.1| Lactobacillus rhamnosus LMS2-1 contig00045, whole genome shotgun sequence Length of sequence - 8272 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 6, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 20 - 1513 1316 ## COG0477 Permeases of the major facilitator superfamily + Term 1606 - 1656 13.4 - Term 1594 - 1644 13.4 2 2 Tu 1 . - CDS 1690 - 2160 436 ## LC705_00895 MerR family transcriptional regulator - Prom 2290 - 2349 8.7 3 3 Tu 1 . + CDS 2090 - 2287 93 ## gi|229551692|ref|ZP_04440417.1| hypothetical protein HMPREF0539_0948 + Prom 2292 - 2351 3.7 4 4 Op 1 . + CDS 2382 - 3860 1400 ## COG0477 Permeases of the major facilitator superfamily 5 4 Op 2 . + CDS 3857 - 4582 703 ## LC705_00897 hypothetical protein + Term 4624 - 4666 4.0 - Term 4412 - 4458 1.6 6 5 Tu 1 . - CDS 4647 - 5315 498 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 5432 - 5491 4.0 7 6 Tu 1 . + CDS 5739 - 8150 2472 ## COG0495 Leucyl-tRNA synthetase + Term 8201 - 8247 7.2 Predicted protein(s) >gi|225002537|gb|ACIZ01000042.1| GENE 1 20 - 1513 1316 497 aa, chain + ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 5 471 3 475 491 381 49.0 1e-105 MKQRKTNVAVVTAAIFMGTFMTAIEGTIVSTAMPTIIGSLHGVHLMNWVFSIFLLTNAMA TPIYGKLSDKIGRKPVFLIGLTIFVIGSLLSGLSQSMVMLIVFRAIQGVGAGAIMPVTFT IIADIYPFEKRAKMLGFNGSMWGIASVIAPLLGGFIVDQLSWHWIFFINVPLGLITFGLV WFFLQEDRRQVRQPLDMRGTVWLLVALLALMYGFQTLAEPNAIWQLAGMALIAVVGFWRF WQAERQAVDPIIDLKLFENRTFIIHNLIAALISGFVIGFEVYMPMWIQGILGMDASLGGF AVTPSSLMWVVGSFFAGKLLGRFQPKPILTGAMFWLLGGSLVLALVPQSTPYFVFLLVAG CLGLGFGLVITITTVTAQAVVSPDQVGVATSFNTLSRTLGQTLMVSVYGIVLNLRLTQGV AADGRLNSNMLNELINPHTAKQLPASVLPTLRQILYEGLHNIYFFSIVIVALALVANHFE AKKVLAKAATQESDEEA >gi|225002537|gb|ACIZ01000042.1| GENE 2 1690 - 2160 436 156 aa, chain - ## HITS:1 COG:no KEGG:LC705_00895 NR:ns ## KEGG: LC705_00895 # Name: glnR # Def: MerR family transcriptional regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 156 1 156 156 290 100.0 1e-77 MELFNKRLRSLDISLGIGETSRVTGATPTQIRYWEKKHLIHSRRHEANGNKRYSLSNIAL IVMIKTMLDEGYTLAKASEEIKKSHQKADMLHVLMSTRLQDIQYDDQQTLLNFGPLENDP TYDVVAVVNEKNAKLYKQPIKPSAAINQQTTDNLLK >gi|225002537|gb|ACIZ01000042.1| GENE 3 2090 - 2287 93 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229551692|ref|ZP_04440417.1| ## NR: gi|229551692|ref|ZP_04440417.1| hypothetical protein HMPREF0539_0948 [Lactobacillus rhamnosus LMS2-1] # 24 65 1 42 42 65 100.0 1e-09 MTRLVSPMPSEISSDRNRLLNSSMKISPLMSVRREARYGEREPDEFVKTESAAFKKYAAT FKSQP >gi|225002537|gb|ACIZ01000042.1| GENE 4 2382 - 3860 1400 492 aa, chain + ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 5 475 11 481 493 446 52.0 1e-125 MDVKDINGKPVNVPMMVITLIVGTFITVLNQTILSTAFPTLMKAFDISTATVQWLSTGFM LVNGIMIPVSAYLSAKVPSKWLYMSAMSTFFVGTLVAFVANSFGVLLAGRLIQAIGVGIT MPLLQNIMMSIFPPNRRGAAMGMAGIAIGVAPAIGPTLSGYVIDNFGWRVLFGMILPIAA LVILAAMFFFKNVLPLSNPKLDVPSLIESSIGFGALLYGFSEVGNDGWGDPMVLGSIAVG LIFIVIFGYRQLHLKEPFVELRVFKSKIFALSTALGTIANMAMVGVEMILPLYLQIIHGK SALESGLTLLPGALLIAVMSPVTGQVFDRIGAKRLAQLGLFFLTIATLPYFFLTTNTPSI FITVIYAVRMFGISMVMMPLTTNGMNALTPDMIRHGTAVNNTVRQVATSMTTAVLISVLS NVTNLAKPAASLLKRNPLQYKQDFLNATLNGYHAAFLLAVGFSLVGWVLAFFLNSHAMSQ EITIQPEKKVKA >gi|225002537|gb|ACIZ01000042.1| GENE 5 3857 - 4582 703 241 aa, chain + ## HITS:1 COG:no KEGG:LC705_00897 NR:ns ## KEGG: LC705_00897 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 241 1 241 241 380 100.0 1e-104 MILWFLGLMVIGLYLSFIMMHRSAKRSTLIAIFSIGLMGSLLLMVLNDNAHFGMEKRTTT DEQTIYTASPNAQMPMLLKQNVGTAGKHVVYIYKTDPKKKAVHTKADLAVSNQVVQTTGT TASMTSRTTRWEYQNSFFSALFNHQGAGQLVAQHNRLVMPKSWIELTTTQAKRLGTKLKA LQHPNAQQKATMAAAVKAKAAELAHANPKLASDQAALLKQAQATVQQAMIQQAVKEVQQQ K >gi|225002537|gb|ACIZ01000042.1| GENE 6 4647 - 5315 498 222 aa, chain - ## HITS:1 COG:lin1664 KEGG:ns NR:ns ## COG: lin1664 COG0671 # Protein_GI_number: 16800732 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Listeria innocua # 4 200 2 193 217 101 31.0 9e-22 MHRRSLPLYFSGTAFMIFIIFLIGILNQASWIQTTDQHVIAFVTRFHVDALKPILIVITE LGNPSILIFLTLGLAGVLLIYRYRIAALFTASVGAMMGILNIGIKYLVQRPRPFIADPQI RALVQAGGFSFPSGHSSGTMMFYGTLILLAWTFVRRPTVKWTITLLAGGMIGLTGYSRIF VRVHYPTDVFAGFALGFALLMLSWWYFSPYFSRRHQRHEKSR >gi|225002537|gb|ACIZ01000042.1| GENE 7 5739 - 8150 2472 803 aa, chain + ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 1 802 1 802 803 1175 67.0 0 MAYDHHEIDKKWQRYWAEHNEFNTTTDPKKPNYYALDMFPYPSGQGLHVGHPEGYTATDI VARMKRMQGFNVLHPMGWDAFGLPAEQYALNTGHNPRTFTKQNIETFKRQINSLGFSYDW NREINTTDPNYYKWTQWIFEQLYKHGLAYEAEVPVNWSPDLGTVVANEEVIDGKTERGGF PVVRKPMRQWMLKITAYADKLLADLDDLDWPESIKQMQRNWIGKSTGAQITFTVTDTQEK FDVFTTRPDTLFGATYVVMAPEHDLVEKITTPEQQAVVDAYIEEAAHKSDLDRTALDKEK TGVWTGAYATNPVNGEKLPIWISDYVLATYGTGAIMAVPAHDDRDYAFAKKFGIEIKPVI EGGNIDEAAYTGDGVHINSGFLDGLNEQDAIDRMIAWLEDKGIGQEKVNYKLRDWVFSRQ RYWGEPIPVIHWEDGETTLVPEDELPLTLPEEVDIKPSGTGESPLANLTDWVNVVDKNGR KGKRETNTMPQWAGSSWYFLRFVDPHNKEALADYDKLKQWMPVDLYIGGAEHAVLHLLYA RFWNLFLYDIGAIPNKEPFQRLFNQGMILGDNHEKMSKSKGNVVNPDDVVDEYGADTLRL YEMFMGPLDAGIAWSTDGLAGARKFLDRVWSAFIDDEGKLRDRITTINDGRLDKVYNETV KKVTEDYEALHFNTAIAQMMVFINSARKDDDLPLEYVEGFVKMLAPIAPHLMEEIWQRLG HDHSLTYAPWPSYDESKLKTDTYDMMVQVNGKLRGSITASVDETDDEIKQAALANENVQK YTTGKDIKKIIVVPRKIINIVAK Prediction of potential genes in microbial genomes Time: Wed May 25 19:43:12 2011 Seq name: gi|225002536|gb|ACIZ01000043.1| Lactobacillus rhamnosus LMS2-1 contig00046, whole genome shotgun sequence Length of sequence - 8483 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 6, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 121 - 180 4.2 1 1 Op 1 2/0.000 + CDS 207 - 1850 1435 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 2 1 Op 2 . + CDS 1855 - 2565 687 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 2571 - 2630 3.8 3 1 Op 3 . + CDS 2651 - 2866 244 ## COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain + Term 2927 - 2989 9.6 - Term 2921 - 2964 8.1 4 2 Op 1 . - CDS 2997 - 3827 350 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 5 2 Op 2 . - CDS 3824 - 4324 456 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - TRNA 4507 - 4591 55.7 # Leu CAG 0 0 + Prom 4632 - 4691 4.7 6 3 Tu 1 . + CDS 4721 - 5194 409 ## COG0386 Glutathione peroxidase + Prom 5217 - 5276 2.7 7 4 Tu 1 . + CDS 5301 - 6509 1031 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities + Term 6547 - 6599 4.1 - Term 6534 - 6588 12.1 8 5 Tu 1 . - CDS 6637 - 7965 779 ## COG1409 Predicted phosphohydrolases + Prom 8070 - 8129 4.1 9 6 Tu 1 . + CDS 8180 - 8446 447 ## COG3830 ACT domain-containing protein Predicted protein(s) >gi|225002536|gb|ACIZ01000043.1| GENE 1 207 - 1850 1435 547 aa, chain + ## HITS:1 COG:SP1529 KEGG:ns NR:ns ## COG: SP1529 COG2244 # Protein_GI_number: 15901374 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pneumoniae TIGR4 # 19 541 1 523 529 322 37.0 1e-87 MENSLGGGTQPPRSDKEKMIRGSAWMTAGSVFSRILGAIYVIPWRIWLGAAFLTANALFT KGYQIYSLFLIISTAGVPGAVSKQVARYNAMGEYKTGMRLFYHGTFAMFIMGILSCGAMW LLAPLLAAGDARMIPVFRSLAWPLLLIPSLSLIRGFFQGYNEMAPSAISQFIEQVARILY MLVMTYAIMVAGNHDYLNAVVHSTFAAFIGAVFGLGLLVVYFVRQKPRLDTLVAHSKQAL NISVNEILVDVARQAIPFIIMDSTINIYYIVDQYTFNPMMKAFYLVSEDQLDRFYALFAG NANKLIMIIVSLAVAMAITVVPLLAGAKTRGDVEGLARQITNTLQLFFIVMIPSALGMVA VARPLYVLFYRDMDFLGIRLLQFSSILAILLGLFTVLAAILQGLFNNRLAIQEMLVGLAV KVIAQWPMIFFFNVYGPVTATMLGMTVSSLLMLYSTNRMYNIHVRQTIRRGVGILAFSLI MCAVCYLIVDVSGILINPESQFGAAFVLLVAVGVGVLIYGYLILKTRLADMIIGARVSRL REILHIR >gi|225002536|gb|ACIZ01000043.1| GENE 2 1855 - 2565 687 236 aa, chain + ## HITS:1 COG:BH3273 KEGG:ns NR:ns ## COG: BH3273 COG1187 # Protein_GI_number: 15615835 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Bacillus halodurans # 1 231 1 233 238 181 44.0 1e-45 MRLDKYLSHLQFGSRKEVKALIRDKRVRIAGELVTDPGYNILPGVAVEVNDAQADGPLEV DYLMNKPAGVITATEDPTQSTVLDLIRPHDYRPGLYPVGRLDKDTTGLLLLTTDGNLGHT LLAPNHHVPKTYAAKLAKALTTEMKHQLEHGVALKDFTTAPADVQVVPATDNKEIYITIT EGKYHQIKRMLLAVDNEVVALTRIAMGPLRLPEDLDAGEYRALTDDERSLLDQMVR >gi|225002536|gb|ACIZ01000043.1| GENE 3 2651 - 2866 244 71 aa, chain + ## HITS:1 COG:L121994 KEGG:ns NR:ns ## COG: L121994 COG3478 # Protein_GI_number: 15672697 # Func_class: R General function prediction only # Function: Predicted nucleic-acid-binding protein containing a Zn-ribbon domain # Organism: Lactococcus lactis # 3 70 5 72 72 99 73.0 1e-21 MDQQQYICPKCQNTSYISDRFQATGGNFSKIFDVQNKKFVTISCTRCGYTELYRSETSSG MNVLDFLLNGG >gi|225002536|gb|ACIZ01000043.1| GENE 4 2997 - 3827 350 276 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 16 254 242 483 500 139 34 7e-33 MKQLTEQLARAIVRPRSRNTYKGSFGKILIIGGNAQYGGAAIMSASAAVYTGAGLVSVAT NPVNRSALHARLPEAMILDASTSALETAIHQATVIVVGPGLGTDTTALKILKRVFAAVSQ AQVLIIDSSAITLVAAHHLAYPQAQLIWTPHQVEWQRLSGLALAAQTIEASQQAAAKIPG IIIAKSAQTHVFIGNEIYANTAGGPAMATGGSGDTLTGIIAAFAGQFHPLTQAVLAAVFV HSHVADIVAMNSYVALPTMVIQELPAYLKQLSESAN >gi|225002536|gb|ACIZ01000043.1| GENE 5 3824 - 4324 456 166 aa, chain - ## HITS:1 COG:SP0794 KEGG:ns NR:ns ## COG: SP0794 COG0494 # Protein_GI_number: 15900687 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 165 1 164 166 80 33.0 1e-15 MTHKTHRAFGCYGIATIDQRLIVIRKNGGPYIHRFDLPGGSLDGPEPLEHDVLREFSEET GLTATIDRQLGATSFVYPWQYERWTINQHICVFYALTLTGGQLASSVPQFTGQDSLGACA LPLAKLTWENASPLVMFAKDYLQTGTPNLSTQTFNDWTVLKEVPTP >gi|225002536|gb|ACIZ01000043.1| GENE 6 4721 - 5194 409 157 aa, chain + ## HITS:1 COG:SA1146 KEGG:ns NR:ns ## COG: SA1146 COG0386 # Protein_GI_number: 15926888 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Staphylococcus aureus N315 # 2 156 3 158 158 177 55.0 7e-45 MSIYDFEVTLEDGSKYSLNKYKGRPMLIVNTATKCGFAPQFDGLEALYKKYQKAGLIVLG FPSNQFKQELADGHAAAEACRMKYGVSFPMHQLIKVNGQQTAPLFKYLKTEAPGELGKSI KWNFTKFLVDRNGHVVKRFAPKTTPEAIEPAVEELLS >gi|225002536|gb|ACIZ01000043.1| GENE 7 5301 - 6509 1031 402 aa, chain + ## HITS:1 COG:FN0625 KEGG:ns NR:ns ## COG: FN0625 COG1168 # Protein_GI_number: 19703960 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Fusobacterium nucleatum # 11 394 6 389 398 350 39.0 3e-96 MEDLPTDIATFVDTHLVDRHNSNAVKWDGLKEEFGRADLLPMWIADTEFKAPQAVLDALT ARVKEGMFGYSIRPQSYYEAFINWQKERHGITVEPEWMRFGVGVVKSLYAMVNWLTEPGD PVLIMQPVYYPFMNAINDLGRKVVSVDLQLTADGWRMDFDQLEKTLAANEIKAMILCSPH NPVGRIWTRDELEQLFAITSRYDVTVVSDEIHGDLEVSGPKFTSALQVAEGKARKKLVVL NAPSKTFNLAALLNSHIIIPDQALRTSYDAFIKQLHPVDTSLMGQVAGEAAYRHGAAWLD QVLQVVRYNYRQLQACLAAAAPQATLADLQGTYLAYVDIGAYVAPSQIKDFVEGVCGLAV DYGAWFSPQTATYIRLNLATDPKLVAEAINRLTTHLAQQPQR >gi|225002536|gb|ACIZ01000043.1| GENE 8 6637 - 7965 779 442 aa, chain - ## HITS:1 COG:lin2791 KEGG:ns NR:ns ## COG: lin2791 COG1409 # Protein_GI_number: 16801852 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Listeria innocua # 30 408 33 418 443 197 31.0 4e-50 MKVGKYLVALFGMFLLALGLTQIHPDHQTPLTDDAHPRIWVLSDTHFIAPSLHDERSAYT QIKRSAAGKDMDYQPVAIHALVQNALKSRPTALIITGDVTFNGEKTSAESLMHRLQPLVD HGIKVLIIPGNHDIYDGWARAYKGRQQRLTEQISPSDWRQIFHSSYEQAAAQDGNSLSYR VNLNHQYQLLLLDSNIYTIEPSNRPPNTGGKLSPQTMTWVRRQLALGARAHRKSIIFMHH NLYTHNEAVNQGYVLDNSDALKKLLTRYHVPLVFSGHIHAQDISRDPAGQCPTIEIVSGA FSISPASYGVVTFGPQQITYQKQITDLTPYLTAKQRKNPDLLHYQRYLKKLFLQDGEALA YGDLMDNNVTNQRDLDAAARLMGILNWRFFTGNDHPSRAELKRLHADPGWSVLERSAMLR RYLKTIVQDHNLGDQYLRLKLR >gi|225002536|gb|ACIZ01000043.1| GENE 9 8180 - 8446 447 88 aa, chain + ## HITS:1 COG:lin0537 KEGG:ns NR:ns ## COG: lin0537 COG3830 # Protein_GI_number: 16799612 # Func_class: T Signal transduction mechanisms # Function: ACT domain-containing protein # Organism: Listeria innocua # 1 88 1 89 89 78 50.0 3e-15 MQVIVTVIGTDKVGIIAQVTTALANLDVNILDVSQTIMQGAFTMMLLAKIPDDASFKTVK QQLTALGDKIGVEIKVSRQEIFDAMHRL Prediction of potential genes in microbial genomes Time: Wed May 25 19:43:19 2011 Seq name: gi|225002535|gb|ACIZ01000044.1| Lactobacillus rhamnosus LMS2-1 contig00047, whole genome shotgun sequence Length of sequence - 16381 bp Number of predicted genes - 19, with homology - 18 Number of transcription units - 13, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 21 - 1364 1429 ## COG2848 Uncharacterized conserved protein + Term 1452 - 1502 6.5 + Prom 1366 - 1425 4.7 2 2 Tu 1 . + CDS 1531 - 2598 441 ## COG4469 Competence protein - Term 2678 - 2707 -0.4 3 3 Op 1 . - CDS 2839 - 3474 343 ## LGG_00863 dithiol-disulfide isomerase - Term 3495 - 3543 -0.9 4 3 Op 2 . - CDS 3544 - 4137 564 ## COG4116 Uncharacterized protein conserved in bacteria - Prom 4174 - 4233 5.2 + Prom 4009 - 4068 4.8 5 4 Op 1 6/0.000 + CDS 4304 - 4981 535 ## COG2357 Uncharacterized protein conserved in bacteria 6 4 Op 2 7/0.000 + CDS 4983 - 5780 707 ## COG0061 Predicted sugar kinase 7 4 Op 3 . + CDS 5780 - 6682 516 ## COG0564 Pseudouridylate synthases, 23S RNA-specific + Term 6767 - 6816 12.2 - Term 6755 - 6802 14.3 8 5 Tu 1 . - CDS 6826 - 7884 885 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis - Prom 7912 - 7971 6.2 - Term 8022 - 8071 15.1 9 6 Op 1 . - CDS 8101 - 8739 646 ## COG3142 Uncharacterized protein involved in copper resistance 10 6 Op 2 . - CDS 8759 - 9577 872 ## COG1968 Uncharacterized bacitracin resistance protein - Prom 9598 - 9657 4.8 - Term 9695 - 9736 6.1 11 7 Op 1 . - CDS 9782 - 10822 972 ## COG2706 3-carboxymuconate cyclase - Prom 10846 - 10905 2.6 12 7 Op 2 . - CDS 10960 - 11094 57 ## - Prom 11125 - 11184 3.7 13 8 Tu 1 . + CDS 11066 - 11440 476 ## COG3731 Phosphotransferase system sorbitol-specific component IIA + Term 11466 - 11495 1.4 - Term 11454 - 11483 1.4 14 9 Tu 1 . - CDS 11490 - 11759 460 ## PROTEIN SUPPORTED gi|116494418|ref|YP_806152.1| ribosomal protein S14 - Prom 11804 - 11863 2.2 15 10 Tu 1 . - CDS 11874 - 12863 967 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 12926 - 12985 4.7 - Term 13004 - 13031 1.5 16 11 Tu 1 . - CDS 13047 - 13994 603 ## COG0598 Mg2+ and Co2+ transporters - Prom 14014 - 14073 3.0 17 12 Tu 1 . + CDS 14060 - 14902 495 ## COG0500 SAM-dependent methyltransferases + Term 15020 - 15065 -0.8 18 13 Op 1 . + CDS 15388 - 15897 377 ## COG0219 Predicted rRNA methylase (SpoU class) 19 13 Op 2 . + CDS 15921 - 16328 563 ## COG4835 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|225002535|gb|ACIZ01000044.1| GENE 1 21 - 1364 1429 447 aa, chain + ## HITS:1 COG:lin0538 KEGG:ns NR:ns ## COG: lin0538 COG2848 # Protein_GI_number: 16799613 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 447 1 451 451 540 65.0 1e-153 METQQIKETIEMISEENLDIRTITMGISLLDCVTGNLQTTADHVYAKIMKKAANLVAVAD AISDEYGIPIVNKRISVTPVSLLAGADQMLDFRPVAYAMDRAAKDLGVDLIGGYSALVQN GSTKAETALMKSLPEVLATTERVCASVNIGSTRSGLNMDAVKLMGTVVKQVADRKPQNAM KLVVFCNAVEDNPFMAGAFWGISEGDVAINTGVSGPGVVQRALAAEPDASFEQVCETIKQ TAFKVSRMGQFVGKVAADRLKVPFNIVDLSLAPTPAQGDSVAQILETMGLSHVGTPGTTA ALALLNDAVKKGGIMAAERVGGLSGAFIPVSEDANMITAAANGQISLEKLEAMTAVCSVG LDMVAVPGDTPDAAISGMIADEAAIGMINNKTTAVRVIPVPGKQIGDQVEFGGLFGTAPI MAVNDGDASQFINRGGRIPAPIHSFKN >gi|225002535|gb|ACIZ01000044.1| GENE 2 1531 - 2598 441 355 aa, chain + ## HITS:1 COG:SPy1395 KEGG:ns NR:ns ## COG: SPy1395 COG4469 # Protein_GI_number: 15675318 # Func_class: R General function prediction only # Function: Competence protein # Organism: Streptococcus pyogenes M1 GAS # 1 239 4 256 320 88 31.0 2e-17 MFVALDEENRRVILTSHEQAQQLRNRSFHCPICKQHVLIKNGVVMPAHFAHRQRSDNEGE PESVEHLTGKSWLVTWLRLHQQAATLEYYDANIRQRADILVHRNPPKVLEFQASPLSIPD LKKRTTMYHARGWEVTWILGRRYQHNRGKRQARKFLTLEDNLLTLWYLNSQAGKLTRVQL MPNGRLLTYYVQRCSPKQCWQPELVDGLRQTRHIGLSLQKRVPSWLALQALAYQQHHNLH GVPWIVHHRSHPLRHFGIPELLLRVKWLLTFEGRTFTDRDNLNFWLAALPNVWTPLLPAG TLGTLIGKHWLELLQTAGFIRRDHLGYRWRQLPHWFTDIDHKLVAPSCIVPSAKP >gi|225002535|gb|ACIZ01000044.1| GENE 3 2839 - 3474 343 211 aa, chain - ## HITS:1 COG:no KEGG:LGG_00863 NR:ns ## KEGG: LGG_00863 # Name: not_defined # Def: dithiol-disulfide isomerase # Organism: L.rhamnosus # Pathway: not_defined # 1 211 1 211 211 408 100.0 1e-113 MLEIFLFFNPIGSVCLSTEQKLLHQLDKFEQEVKVHFVPVLNLDIIEQFMQCEQLNVHSL AKRNQLLRAAYNLALDYKAAQYQGNKKARMLLLRLQQHAPLVQYQYDAAFVAKMLTKCHL DHEMFYEDRQRSEVKMGFDSDQRTANQMGITQTPSLVIVDTDRKVDDGHAVLIEQISDPD LIPRLCELIRTDPSHFFTERPENMGSHFRFF >gi|225002535|gb|ACIZ01000044.1| GENE 4 3544 - 4137 564 197 aa, chain - ## HITS:1 COG:SPy1124 KEGG:ns NR:ns ## COG: SPy1124 COG4116 # Protein_GI_number: 15675104 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 6 186 5 181 192 94 34.0 1e-19 MSISREQEFKTCLSKNAFLALLNYFDFEPAFSQMNTYYDTADGAVKAARLGLRIRQFADH AEQTLKVPNESTQRDLEEITDPLSLVEAQKLIEQGELKSGQVTQALAARGIDPATVAPQT QAKTTRRLAHLPAGLLTLDQTFYIDQTSDFELEMEYQNLAVAQKFYDDLLRHFHIKKQPV INKVQRAYMHVHDSQAK >gi|225002535|gb|ACIZ01000044.1| GENE 5 4304 - 4981 535 225 aa, chain + ## HITS:1 COG:lin0966 KEGG:ns NR:ns ## COG: lin0966 COG2357 # Protein_GI_number: 16800035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 205 4 204 222 270 70.0 2e-72 MQRDWDSFLMPYEQAVGELKIKFRGMRKQFQQANEHTPIEFVTGRVKPVSSIIEKQSRRF ISDELLEQDMQDIAGLRIMCQFVEDIYQVVDLLRQRTDMKIVEERDYVTNVKPSGYRSYH VVIEYPVQLIHGEKKILAEVQIRTMSMNFWATIEHSLNYKYNGEFPDTLKARLKRAAEAS FMLDKEMSDIREEIQEAQHLFVYGKGQQPYSDTTDDSKPDDKKDE >gi|225002535|gb|ACIZ01000044.1| GENE 6 4983 - 5780 707 265 aa, chain + ## HITS:1 COG:SP1098 KEGG:ns NR:ns ## COG: SP1098 COG0061 # Protein_GI_number: 15900966 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 262 7 268 272 266 51.0 4e-71 MRVTVFHNSIPASIKAAQKLLKLLKNGHFELDERHPQVVITIGGDGTLLSAFHRYADQLD TIRFIGVHTGHLGFYTDWRDFEIEDLVIALKEDSGQSVSYPLLDVRAIYADATSAHYLAL NEATLKRLNGTMRTEVYIKGDFFESFRGDGLCVSTPTGSTAYSKSNGGAVIHPRLDALQI TEIASINNRVFRTLSSPIITAPDEWVTLEPTGRDDYVMTVDQFVINPPTIKQIRYKIAKE RIHFARYRHMHFWDRVEDAFIGAKH >gi|225002535|gb|ACIZ01000044.1| GENE 7 5780 - 6682 516 300 aa, chain + ## HITS:1 COG:SP1099 KEGG:ns NR:ns ## COG: SP1099 COG0564 # Protein_GI_number: 15900967 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Streptococcus pneumoniae TIGR4 # 1 294 1 293 298 237 44.0 3e-62 MRFEWQYEGPPLKLAAFLKQQGFSRAQLKKLRYQGGFIFVNKRQRHTAYPLRNGDRILVQ TAPEQAAASVVPYEHEFPICYEDDDYLVVNKPAGVASIPAVGRRNDSMANMVKAYLIKTH AESQAVHVVTRLDRDTSGLMVFAKHSLAHSLLDRQLHSENFLKQYLALVTSKSLLSAHGW IILPIGVSTGFYMRRVVSETGKPSVTEYQTLAQNSHAAAVLVTLHTGRTHQIRVHFAAIG HPLFGDDLYNRQADDFKRQALHCAHLRFWQPLQKQWVDLHAPLPTDMAKLSDHLHLPVVY >gi|225002535|gb|ACIZ01000044.1| GENE 8 6826 - 7884 885 352 aa, chain - ## HITS:1 COG:lin2785 KEGG:ns NR:ns ## COG: lin2785 COG1477 # Protein_GI_number: 16801846 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Listeria innocua # 27 341 36 348 360 310 49.0 3e-84 MRKIFIGLIAFMGLLTLAGCQKKTQATYLKTPYTRNEFVMGTTCTLTIYDKGKKSALKDG FAMIHHVDAEATLTRGGSVLDKINANAGVKPVKVPKDFMPLLEKAYYFSKNSNGSFDMAI GAVTNLWQIGLPGARVPAQSEITQALPLVNWRDVKLDTKNNTAYLTKKGMRLDFGGIAKG WVADKVREVLRKDGVTAAIIDLGGNVVVMGHSPLGAKRDWHVGIQDPTAARGTAVGTIPE SNESIVTAGTYEQYLISHGHKYIYLFDPKTGYPYDNNLASVTIVSKNSVDGDALSNAAFD KGLKDGLQYMNAKNSQHIQAIFITNDKKIYLTNGLKKQFKFDADSGYHKGNF >gi|225002535|gb|ACIZ01000044.1| GENE 9 8101 - 8739 646 212 aa, chain - ## HITS:1 COG:lin0025 KEGG:ns NR:ns ## COG: lin0025 COG3142 # Protein_GI_number: 16799104 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Listeria innocua # 1 209 2 209 213 182 47.0 3e-46 MLREVAVENYTDIPKALAAGADRIELNDNLAVGGTTVSKGVMAESAKYVHEHGRSLVTMI RPRGGNFVYNDTELKIMEADLFEAQALGVDGVAFGALLPDGTIDEDAMTSLIAASAGMSV VFHMAFDAIPETKQLAAIDWLAAHHVDRILTHGGPLSTPIETTLPHLQALIAHAAEKQIT ILPGGGITSQNAATISEQLGVKELHGTKLIAF >gi|225002535|gb|ACIZ01000044.1| GENE 10 8759 - 9577 872 272 aa, chain - ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 3 268 2 275 284 259 52.0 5e-69 MFDIIKAVIIGIVEGLTEFLPISSTGHIDLVDQVVKLSQGRQFMNMFEYVIQFGAILAVI LLYFNKLNPFSKPTVQAQKDTWQLWAKVIIAVLPSVVVGLPLNDWMDKHLHTPLVVATTL ILYGVLFIVLENYLKNKQAHITSLADITYQTALLIGLFQVLSIVPGTSRSGATILGALLI GTSRYVATEFSFFLAIPTMVGVSILKIGKYLLQGNGFTGEQWVVLLTGSVVSFLVAIVAI KWLLKFVQTHDFKPFGWYRIILGAIVLLVMFL >gi|225002535|gb|ACIZ01000044.1| GENE 11 9782 - 10822 972 346 aa, chain - ## HITS:1 COG:L11851 KEGG:ns NR:ns ## COG: L11851 COG2706 # Protein_GI_number: 15674136 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Lactococcus lactis # 1 343 1 341 341 290 43.0 3e-78 MKQRLLLGGYTRHGGAGIYTGTFDDTQGQLTAPQPYITDLGSPTYLAVSDDHILYAVDAE GDQGGVASYDLNVNPPKLINRVLQPGSSPAHISIDENRQLVYASNYHEGRINVYKINRDH SLTATDEIVHTGNGPRPEQDGAHVHFAAVTPDFQRLAVADLGNDTLTTYTISDAGKLGDP VVFHAEPGFGPRHIAFNHNNPVAYLLGELSSQVSILSYDAATGSFELIATLPTIPEDYTD HNGAAAIRLSSDQRFLYVSNRGFNSLTVFAVSPDGRNLSQLQQISTAGDFPRDFNFDLTE RYVLAVNQNTSNGTLYSRDSKTGLLTEEQRDIPTPEAVNVLFLATK >gi|225002535|gb|ACIZ01000044.1| GENE 12 10960 - 11094 57 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAVIVAVNCMLLPPFLLVIFLSLYRSTKKDAVRSFLSVLLYLEK >gi|225002535|gb|ACIZ01000044.1| GENE 13 11066 - 11440 476 124 aa, chain + ## HITS:1 COG:lin0546 KEGG:ns NR:ns ## COG: lin0546 COG3731 # Protein_GI_number: 16799621 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Listeria innocua # 18 120 18 116 116 57 31.0 8e-09 MQFTATITAIGKDALSSKDPMIILFGPEATDALRDVAVIQQFDDPAALSQFSIQAGDRLT IDGTAFTMTYVGQLAISNLKTIGHVTLLFQDVPAEKPMQNAIYLKPTQRPAFRVGTTLTY NTQA >gi|225002535|gb|ACIZ01000044.1| GENE 14 11490 - 11759 460 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116494418|ref|YP_806152.1| ribosomal protein S14 [Lactobacillus casei ATCC 334] # 1 89 1 89 89 181 100 2e-45 MAKKSKIAKEKKIEATIAKYAPLRAKYKAEHNYAALQALPRNASPVRAHSRDELDGRPHA YMRKFKMSRLNFRDLAHKGQIPGVRKASW >gi|225002535|gb|ACIZ01000044.1| GENE 15 11874 - 12863 967 329 aa, chain - ## HITS:1 COG:CAC3471 KEGG:ns NR:ns ## COG: CAC3471 COG0516 # Protein_GI_number: 15896710 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Clostridium acetobutylicum # 7 328 4 325 327 509 73.0 1e-144 MNNGMQIFDYEDIQMIPNKCVVRSRKEVDTSVKFGPHTFKIPVVPANMQTIIDEPLAIWL AEHDYFYIMHRFQPERRMDFVRDMKKRGLIASISVGVKDEEFDFIEALAANDLTPDYVTI DIAHGHAQIVIDMIQHIKHYLPKTFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCIT KLKTGFGTGGWQLAAVRWCAKAARKPIIADGGIRNNGDIAKSIRFGATMCMIGSLFAGHE ETPGKHVTIDGKEYQEYYGSASEYQKGTHHNVEGKKILLPVKGKIGDTLKEMQEDLQSAV SYAGGRDLEALTKVDYVIVKNSIFNGDQY >gi|225002535|gb|ACIZ01000044.1| GENE 16 13047 - 13994 603 315 aa, chain - ## HITS:1 COG:lin1052 KEGG:ns NR:ns ## COG: lin1052 COG0598 # Protein_GI_number: 16800121 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 9 315 8 314 314 259 44.0 5e-69 MLSIYRFDDKTGRLNPQSRISPGVWINVVNPTPKEREQLQTKANLSEAFLLYGLDPDEGA RYEYDEDNDSHLFIFDMPVVTRDARKKVVYETAPLAIIITNIAVITINEEPIPLLSLFSE GKISNFNPQHQNRTVLQILYQISISYLTYLRDLNKAREANENKLQRNLRNEELYGLMGIQ RSLVYFMMSLRTDRNVLEQLKRTNPLHLNEDDQDLLEDTIIENQQAVEMAQISNSIINET ADTYSSIINNNMNGVMKFLTSYSILLTIPTLVFSFYGMNVHLPLADMKVSWIITIAISIA IAMVLAFQFWRNKFF >gi|225002535|gb|ACIZ01000044.1| GENE 17 14060 - 14902 495 280 aa, chain + ## HITS:1 COG:L55507 KEGG:ns NR:ns ## COG: L55507 COG0500 # Protein_GI_number: 15673975 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 273 2 269 273 184 37.0 1e-46 MRKREAKIELAAQQTPLFACPVCAQPMQVKAGSLICSKGHRRDFSRKGTVNFLNQQVATE YTATMLAARRRMLTAGLFTPFLDAMAAKLVPHQRLLDVGCGEGTPTAYLAHQKQQMAVGF DISAPAINLAGSLAAPVLFAVADLAHLPFVNDAFDTVIDIFSPGNYREFRRVLRPTGQLL KIIPRAGYLKELREGLYSGTRKAEYDNQPVRERFLAAFPQATIQSITYDFPLVADQFTDL MTMTPLSWQAPAERRQVMLTNPPKSIHIEVDLLTVSNLVK >gi|225002535|gb|ACIZ01000044.1| GENE 18 15388 - 15897 377 169 aa, chain + ## HITS:1 COG:L161988 KEGG:ns NR:ns ## COG: L161988 COG0219 # Protein_GI_number: 15673131 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Lactococcus lactis # 3 169 2 169 169 239 69.0 2e-63 MANHIVLFEPLIPANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWAKVRIVY HDSLDDFMATVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPEGFMREHE DQCLRIPMTANVRALNLSNCAALVVYEALRQQHFAGLETVHTYEHDKLK >gi|225002535|gb|ACIZ01000044.1| GENE 19 15921 - 16328 563 135 aa, chain + ## HITS:1 COG:lin0430 KEGG:ns NR:ns ## COG: lin0430 COG4835 # Protein_GI_number: 16799507 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 128 8 127 130 73 33.0 8e-14 MEAKRYPITVESFHYDLVKQGTPVKNDLQVAMRQIQWSDPKKQAELKKGNLFEMMIPFDV VPDNAGFEISGKITQIVQVMDYFGEANELPQEELGKLSRPLVETIETLTYQVTAVALDQG VNLQFGASDEQPGQA Prediction of potential genes in microbial genomes Time: Wed May 25 19:43:30 2011 Seq name: gi|225002534|gb|ACIZ01000045.1| Lactobacillus rhamnosus LMS2-1 contig00048, whole genome shotgun sequence Length of sequence - 10168 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 1, operones - 1 average op.length - 8.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 149 - 208 5.2 1 1 Op 1 . + CDS 228 - 2528 1575 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 2 1 Op 2 14/0.000 + CDS 2537 - 3799 1057 ## COG0612 Predicted Zn-dependent peptidases 3 1 Op 3 4/0.000 + CDS 3796 - 5088 1013 ## COG0612 Predicted Zn-dependent peptidases 4 1 Op 4 1/0.000 + CDS 5088 - 5816 662 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Prom 5818 - 5877 3.4 5 1 Op 5 5/0.000 + CDS 5903 - 6838 728 ## COG1426 Uncharacterized protein conserved in bacteria 6 1 Op 6 4/0.000 + CDS 6835 - 7428 304 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Term 7442 - 7474 3.1 + Prom 7495 - 7554 3.1 7 1 Op 7 5/0.000 + CDS 7657 - 8898 252 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 8 1 Op 8 . + CDS 8950 - 10002 1046 ## COG0468 RecA/RadA recombinase + Term 10125 - 10160 1.3 Predicted protein(s) >gi|225002534|gb|ACIZ01000045.1| GENE 1 228 - 2528 1575 766 aa, chain + ## HITS:1 COG:BS_spoIIIE KEGG:ns NR:ns ## COG: BS_spoIIIE COG1674 # Protein_GI_number: 16078743 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 28 759 24 778 787 590 45.0 1e-168 MAQKRGGRRRPRKKRPTKQQQHTLSWVGALFVVFASLAFFRLGIVGTVLANVFRLVVGDS FLVVSAATVVTGIWFLLADRLPKLARHVWIGLSIILIAALVLLTAQAMATLNVHSHYLLA TWHLLQNDFGLMTTASQVGGGLLGAGLFALLAPLLSSLGATILAWFGVIAGILVFLGVGA NQVFNWLQAFGQACKRGLIQVSDHITALKKADAKKAATRPTSTPEAATDAAHTQSEPSSE RADDFTIKGPTPVKPLPQSEAPAPTKPASAAPVSESSAATAQVPASKLDADMPASDYQLP SLAMLTATPPVDQSAEYQAIKTNRTKLKETFESFGVKVGVKSATLGPSITQYEIQPAVGV KVSKIVNLSDDLALALAAKDIRIEAPIPGKSLIGIEVPNQHIATVGFKEVMAETPKAPNH PLVLPLGRDVNGQVVTFDLTKMPHLLIAGATGSGKSVMINVILTSILMRTKPTDVRLMLI DPKRVELSVYNGVPHLLTPVVTEAKKAPSALNKILTAMDERYQRFAAAGVRNMKEFNQKV AANPASGQSKMPYIVVIIDELSDLMMVAGHEIETAIVRLAQMARAAGIHVIIATQRPSVD VITGLMKANIPSRIAFATSSGIDSRTILDSNGAEKLLGRGDMLFSPIGASKPLRVQGAFI PSVDVERVVKAITDQVAPAYVDSMTPTENVETEQQGDSEDELYDDAKAFVIAQQSASTSM LQRRFRIGYNRAARLIDDLEANQIVGPSEGSKPRKVFVTPTDGNQS >gi|225002534|gb|ACIZ01000045.1| GENE 2 2537 - 3799 1057 420 aa, chain + ## HITS:1 COG:L32666 KEGG:ns NR:ns ## COG: L32666 COG0612 # Protein_GI_number: 15673955 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Lactococcus lactis # 11 416 2 404 418 221 33.0 3e-57 MQKEIKPGVWLMVLPTTQFKTTRINIQFLTPLRRDTVTKRTLLTSLLETNSQEYPTQAAM AAHLESLYGANFSIGVAREGRLHRVGVTMSTVDDRFTDAPLLPKAAAFLKTVLFSPNFQA GQFDAATFDREKQNLDHYLASLDDDRQTQAALGVQRLYFGVDPDQAIPSFGTREDLAPIT TASLTAYYHQMISEDQVVITVLGDVQAEKVAALFADWPLAARSQTTPAIAFNLPEHAEVV SQTAKVVAQQAKFDLAYHVSTDLMGPKYAATLVAEELFGGSSLSLLFTNVREKASLAYYA SSMLDTFRGLMLVQTGIESKDQARVADLIQQQLAAIVRGDFSDDRLQAIKDGILDHQRAA YDSPRFLTNQALYRLLVPDAPQDFESFASRIQAVDRQAVQQAAAAMKLQATYFLTGEDSE >gi|225002534|gb|ACIZ01000045.1| GENE 3 3796 - 5088 1013 430 aa, chain + ## HITS:1 COG:BS_ymfH KEGG:ns NR:ns ## COG: BS_ymfH COG0612 # Protein_GI_number: 16078749 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus subtilis # 20 428 8 414 415 357 43.0 2e-98 MKTQYFRDVDETLITTTLPNGLRLQVVPRPAYHKSYAIMTTDYGAIDTRFAPDGKQMVTY PAGIAHFLEHKLFEKEDHDAFDLFGETGASANAFTSATKTSFLFSTTTQLNKNLQILLDF VQAPFFSTESVAKEQGIIGSEIQMYQDDPGWRVYAGLLENLFPNHPAHVDVAGTAASIAQ ITPEMLYTIHRVFYQPSNMTLVIVGNIDAENVIDFVAANQAQKTFPTRQPIVRGVEADVQ TADIIPYRELKMPVSRPKTLVGFKGQVAIPQTAAGWRYQLSIRLLLEVLFGDSSQLYQAW YDRGLIDDSFDFDFTNQRSFSYGLVGGDTDDPQGLSAAIKEVLAHAADQADLNRNRVALI KRASLGKYYAGLNGLNGVANQLSALSFGEASLFDFPQILNRIRFEDLEQLIPKLFNAEAL TVLTMLPEGK >gi|225002534|gb|ACIZ01000045.1| GENE 4 5088 - 5816 662 242 aa, chain + ## HITS:1 COG:lin1431 KEGG:ns NR:ns ## COG: lin1431 COG1028 # Protein_GI_number: 16800499 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Listeria innocua # 1 242 5 243 243 207 45.0 2e-53 MRSALIIGASGDIGQAVAAKLAAAGWSLYLHYFKHEQVVMDQMRAYQAAYPHQDFIPLQY DLTDDRHLDELTNQLFSLDAVIFAAGMTYYHLFKETTVPEMTTLMRVHLLTPMVLLTKVE RKLAQSGHGRVIFIGSVYGGTGSAMEVAYSTVKGAQSAFVKAYAQEVASLGITVNVVAPG AVTTKMNTKMFDSDTLAKVQAEIPAARFATPQDISYYVSMLVAEEAAYLTGQTLYVTGGW RM >gi|225002534|gb|ACIZ01000045.1| GENE 5 5903 - 6838 728 311 aa, chain + ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 311 1 311 311 141 35.0 2e-33 MDEIGQKLRDARIEKGYTIDDLQQITKIQKRYLIAIEEGHFDALPGDFYVRAFIKQYADT VGLDGDELLTQFQQDIPEPQPQEYAAQSVENKTRATRAEEASPVNRLRRYLPQIAIAAFV IVAIIVIYVVMLFSQSGPKQTIPADSESVAVSSKRSSSKASKSSKTSSSSKSSKSSASSS SKSSEKASKESKKKSDKLDISVAAANGATQAVTLKNLPTSGNKLTLGANGATAWISVIVN GSTTWQGSLTSGNTQEVTLPDNTSTFQVRSGNATATTIELNGKKVDISNGTSVVRTITFT SSTSESEASQE >gi|225002534|gb|ACIZ01000045.1| GENE 6 6835 - 7428 304 197 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 183 484 664 904 121 38 2e-27 MNLPNKLTLIRIFLIPVFTLLLAFNWPAGYLTIAGTKVAMSWFIALIIFIVASLTDFADG QIARRKHLVTNFGKFADPLADKLLVMTAFLFLTAAGQIPAWGTAIILWRELAVTGLRLLL SNEGEVLAAAWPGKIKTNTQMFAIIFLMLNNAWFNNINIPFALILFYVAVFFTIYSGVEY FYKNRGVFADSFGSKQQ >gi|225002534|gb|ACIZ01000045.1| GENE 7 7657 - 8898 252 413 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 260 407 752 898 904 101 40 2e-21 MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRS DIVILIGGLGPTPDDLTKQTLAAHLNLPLVEDAGAMAKLAARVKQQQRPMTPNNRLQAMY PKGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMVDHELLPRLAKYSGHQEVLES RVMRFFGVGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYF KGGFVTYALATKAAFLNIDARQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPD KLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAVMTGMMMVLKRLRE >gi|225002534|gb|ACIZ01000045.1| GENE 8 8950 - 10002 1046 350 aa, chain + ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 5 327 3 325 348 462 74.0 1e-130 MAETERQEALATALKKIEKNFGKGAIMRMGDKVETRVSAVSSGSLAIDDALGVGGLPRGR IVEIYGPESSGKTTVALHAVAMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQPD TGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSG AINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADIIGN RTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERIGQ GREHAKSYLETHEELRRTIEKQVRLAYGMSPDHVIDQADTETDTTTSAAS Prediction of potential genes in microbial genomes Time: Wed May 25 19:43:44 2011 Seq name: gi|225002533|gb|ACIZ01000046.1| Lactobacillus rhamnosus LMS2-1 contig00049, whole genome shotgun sequence Length of sequence - 41722 bp Number of predicted genes - 38, with homology - 37 Number of transcription units - 14, operones - 8 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 308 - 367 6.2 1 1 Tu 1 . + CDS 447 - 2018 1475 ## COG1418 Predicted HD superfamily hydrolase + Term 2059 - 2113 16.2 - Term 2047 - 2101 16.2 2 2 Tu 1 . - CDS 2107 - 2760 549 ## COG1739 Uncharacterized conserved protein - Prom 2841 - 2900 2.0 + Prom 2693 - 2752 4.4 3 3 Op 1 6/0.000 + CDS 2791 - 4056 746 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) 4 3 Op 2 6/0.000 + CDS 4311 - 4733 256 ## COG1040 Predicted amidophosphoribosyltransferases 5 3 Op 3 . + CDS 4858 - 5415 905 ## PROTEIN SUPPORTED gi|116494435|ref|YP_806169.1| ribosome-associated protein Y (PSrp-1) + Term 5433 - 5483 7.1 + Prom 5450 - 5509 4.8 6 4 Op 1 . + CDS 5697 - 5897 66 ## LC705_00947 hypothetical protein + Prom 5900 - 5959 3.0 7 4 Op 2 . + CDS 5999 - 8362 2488 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 8374 - 8426 9.4 + Prom 8424 - 8483 2.3 8 5 Op 1 . + CDS 8503 - 8577 56 ## 9 5 Op 2 4/0.000 + CDS 8621 - 9619 809 ## COG1186 Protein chain release factor B 10 5 Op 3 28/0.000 + CDS 9696 - 10382 329 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 11 5 Op 4 . + CDS 10372 - 11259 833 ## COG2177 Cell division protein + Term 11294 - 11355 6.9 + Prom 11449 - 11508 4.0 12 6 Op 1 7/0.000 + CDS 11530 - 12627 679 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 13 6 Op 2 40/0.000 + CDS 12624 - 13328 772 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 14 6 Op 3 9/0.000 + CDS 13321 - 14988 1299 ## COG0642 Signal transduction histidine kinase + Prom 14997 - 15056 4.4 15 6 Op 4 39/0.000 + CDS 15078 - 15944 808 ## COG0226 ABC-type phosphate transport system, periplasmic component 16 6 Op 5 38/0.000 + CDS 16092 - 17015 644 ## COG0573 ABC-type phosphate transport system, permease component 17 6 Op 6 41/0.000 + CDS 17012 - 17896 773 ## COG0581 ABC-type phosphate transport system, permease component 18 6 Op 7 7/0.000 + CDS 17967 - 18785 275 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 19 6 Op 8 32/0.000 + CDS 18795 - 19559 325 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 20 6 Op 9 . + CDS 19570 - 20247 620 ## COG0704 Phosphate uptake regulator + Term 20303 - 20350 9.4 21 7 Op 1 . + CDS 20954 - 22444 1287 ## COG3595 Uncharacterized conserved protein 22 7 Op 2 . + CDS 22456 - 22716 277 ## LGG_00915 hypothetical protein 23 7 Op 3 . + CDS 22719 - 23054 428 ## LGG_00916 membrane protein + Term 23105 - 23160 10.4 + Prom 23100 - 23159 5.3 24 8 Op 1 10/0.000 + CDS 23322 - 24281 885 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 25 8 Op 2 . + CDS 24283 - 25110 719 ## COG0682 Prolipoprotein diacylglyceryltransferase 26 8 Op 3 . + CDS 25121 - 26176 937 ## COG0240 Glycerol-3-phosphate dehydrogenase 27 8 Op 4 1/0.500 + CDS 26242 - 27189 605 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 27233 - 27293 13.2 + Prom 27260 - 27319 3.0 28 9 Tu 1 . + CDS 27441 - 29168 1639 ## COG1109 Phosphomannomutase + Term 29250 - 29295 9.8 + Prom 29340 - 29399 4.0 29 10 Op 1 40/0.000 + CDS 29431 - 30078 600 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 30 10 Op 2 4/0.000 + CDS 30071 - 31081 733 ## COG0642 Signal transduction histidine kinase + Prom 31101 - 31160 2.0 31 10 Op 3 . + CDS 31181 - 31846 324 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 32 10 Op 4 . + CDS 31851 - 32198 363 ## LC705_00973 hypothetical protein 33 10 Op 5 . + CDS 32211 - 32744 392 ## LC705_00973 hypothetical protein + Term 32842 - 32886 0.5 + Prom 32790 - 32849 3.7 34 11 Tu 1 . + CDS 32910 - 34217 691 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Prom 34691 - 34750 6.7 35 12 Tu 1 . + CDS 34804 - 35451 719 ## COG1896 Predicted hydrolases of HD superfamily + Term 35491 - 35533 1.0 36 13 Op 1 7/0.000 + CDS 35844 - 37859 1987 ## COG0556 Helicase subunit of the DNA excision repair complex + Term 37897 - 37948 7.4 + Prom 37879 - 37938 1.6 37 13 Op 2 . + CDS 38040 - 40934 2011 ## COG0178 Excinuclease ATPase subunit + Term 40944 - 40980 4.0 + Prom 41055 - 41114 7.2 38 14 Tu 1 . + CDS 41136 - 41675 612 ## LC705_00978 integral membrane protein Predicted protein(s) >gi|225002533|gb|ACIZ01000046.1| GENE 1 447 - 2018 1475 523 aa, chain + ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 4 523 1 520 520 580 68.0 1e-165 MSSVTLVSITLAAVIALAVGLLIGFALQKKLHQNSLDRATQTAEGIIEAAKKEAATLKKE KLLEAKDENHRYRTQLEDELKDRRAEVQKSEHRLNQREDTLDRRDDTLDRKEQSLADREA NLNKRQQQLDEREQAISSEISKQQTELERIAELSHEQARTQILDQTQSELTHERAVMIKE SEDEAKEAADKKAKVLIADAIQRSASDIVAETTVTVVNLPNDDMKGRIIGREGRNIRTLE TLTGIDLIIDDTPQAVVLSGFDPIRREIARIALEKLIQDGRIHPARIEEMVDKARKEMDD RIREIGEQAIFDVGIHNMHPDLIKILGRLHFRTSYGQNVLDHSIQVAKLAGVMAAELGED VTLAKRAGLLHDIGKALDHEVDGSHVEIGVELATKYKEPKTVINAIASHHGDVEPTSVIS VLVAAADAISAARPGARSESLENYLHRLEKLEAIANSHAGVDHSFAIQAGREVRVIVQPE KLSDDQSVILARDIRNEIEKELEYPGHIKVTVIRETRTVEYAK >gi|225002533|gb|ACIZ01000046.1| GENE 2 2107 - 2760 549 217 aa, chain - ## HITS:1 COG:L98095 KEGG:ns NR:ns ## COG: L98095 COG1739 # Protein_GI_number: 15673073 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 5 209 3 207 209 176 45.0 2e-44 MKPYLTIKESGNYTQIIKKSRFITHLARIHDEDEAKAIIDRISHEHAKANHNVFAYVLGN ENQIQRASDNGEPSGTAGSPTLEGLLQHELRDTLAVTTRYFGGIKLGAGGLIRAYAGNVN AAIETIGIVARIKQKAVTFQIPYADLNPLQHFLETHNLTIATIDYGVAVTLTLHLDADQL DKNLALIKDFLHGQFDPQIGTSQYREVPYATSEVHKP >gi|225002533|gb|ACIZ01000046.1| GENE 3 2791 - 4056 746 421 aa, chain + ## HITS:1 COG:BS_comFA KEGG:ns NR:ns ## COG: BS_comFA COG4098 # Protein_GI_number: 16080600 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Bacillus subtilis # 33 419 54 453 463 279 40.0 6e-75 MDLAGAQLTQRELARLAVSNISHATVVPALVKDHHQWQCQRCCSRRPVALPDGRIYCPEC VALGRLTNADHLYRFEQAHLPVGDGQLTWHGLLTPDQQAASDALQASVAAGREHLIWAVT GAGKTEMLFPTIAQLIQQQKRVAIVSPRIDVIRELAPRFRTAFATTPISVRYGGHFDQTD SDLLLATVHQLLRFYRAFDLIVVDEVDAFPMRGTPMLHQAVRQARRGSVAYLTATPDRQL KQAIRRGRLGVSRLFRRFHGHPLPVPRIQLVNLRHVPHSLPKAVIMWVQQVLATKRVCLL FVPKISWAEQLAGKLRQIGLKAAGVASTDAQRAEKVTAFRQGQLEVLVTTTILERGVTVP RCAVAVLAAADPEFSASALIQIAGRAGRAADSPDDPVVFFSDRYTLAMLAARRQIVMMNG R >gi|225002533|gb|ACIZ01000046.1| GENE 4 4311 - 4733 256 140 aa, chain + ## HITS:1 COG:L0319 KEGG:ns NR:ns ## COG: L0319 COG1040 # Protein_GI_number: 15673071 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Lactococcus lactis # 1 140 83 216 216 85 37.0 3e-17 MKAWIYQYKGLGDYRLHVAFQDLIAERLRHAEALVPIPSEAKHYEWRGFDPILGLFGCLP LQNWLQKSATARPQAQKTRRERLKTPQSFRVLVSAKTLNRVRQITLLDDLYTTGRTLYHA RDALVAAGFKGTIQAFTLIR >gi|225002533|gb|ACIZ01000046.1| GENE 5 4858 - 5415 905 185 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116494435|ref|YP_806169.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus casei ATCC 334] # 1 185 1 185 185 353 96 1e-96 MLTYNVRGENIEVTEAIRNYVEKRISKLNKFFGGSVTATAHVNLKVYPDKTAKVEVTIPL SFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSREKGFGQIDIDSNAPAEPKP AEDDDNLKVVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDADTNGTSIVYKRRDGRYGL IETNE >gi|225002533|gb|ACIZ01000046.1| GENE 6 5697 - 5897 66 66 aa, chain + ## HITS:1 COG:no KEGG:LC705_00947 NR:ns ## KEGG: LC705_00947 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 13 66 1 54 54 91 100.0 1e-17 MAKVWLSRSRTLMFWFMPITRSPAQKPAHKDLGRNDQTRVITPKAAYAPVSNRAGSRSPS YFQSPL >gi|225002533|gb|ACIZ01000046.1| GENE 7 5999 - 8362 2488 787 aa, chain + ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 786 1 786 839 1026 67.0 0 MANILRKWVESDKREIGRLGKIADQVQRYEDEYAALSDDQLKANTQKFKDRLAAGATLDD ILPEAFATAREGAKRVLGLFPFRVQIIGGIVLHEGNIAEMKTGEGKTLTATMPVYLNALT GKGVHVVTVNEYLSTRDATEMGELYNWLGLSVGLNLNSKNSDEKREAYNCDITYSTNSEL GFDYLRDNMVVYKEQMVQRPLNFAIVDEVDSILIDEARTPLIISGGAEKTTGLYIRADRF VKTLKADTDYKIDWPTKTISLTESGIRKAEKNFGLDNLYDTENTALTHHIDQALRANYIM LKDIDYMVSNGEVLIVDQFTGRAMEGRRYSDGLHQAIEAKEGVQIQDENKTMANITYQNF FRMYTKLAGMTGTAKTEQEEFREIYNMEVISVPTNKPVIRVDSPDVLYPTLDAKFNAVVD DIKKRHKKGQPILVGTVAIESSERLSKQLDDEKIPHTVLNAKNHFKEAEIIMNAGQRGAV TIATNMAGRGTDIKLGPGVTELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSTQFYLS LEDDLMKRFGSERIKAMLDRFKVADDDQVIQSRMISRQVESAQKRVEGNNYDTRKNTLQY DDVMREQREVIYKQRQQIINEDETLKPVLMAMINRTITRIVQTHTQGDQKDWNLDALYAW ITANMADPEKFKRSELDGKSQDELIGLLADMAENNFQHKNKQLGDDAQMLEFEKVVILRV VDSAWTDHIDAMDQLRQSIGLRGYGQMNPLVEYQEEGYRMFEEMIASIDDDVTRLFMKAE IRQNIRR >gi|225002533|gb|ACIZ01000046.1| GENE 8 8503 - 8577 56 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MELSVMRNTLAAMRTKINQFRGSL >gi|225002533|gb|ACIZ01000046.1| GENE 9 8621 - 9619 809 332 aa, chain + ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 1 323 1 323 327 424 65.0 1e-118 MAEPGFWDDSEAAQKVIDANNKLKEKHDRFYALENELEDLEAGLELLQDEPDPDLQHEEE TKLKDLQEKLDQYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQRWADQNG FKVEVADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPFDSAGRRHTSFASV DVMPELDNSIEVDIRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIVTSSQAQRSQ FQNKATAMAMLKAKLYQREEEAKKAKAKAIQGEQKDVAFGSQIRSYVFHPYTMVKDHRTN YETGNGQAVMDGDLNPFINAYLQWELAQKNPD >gi|225002533|gb|ACIZ01000046.1| GENE 10 9696 - 10382 329 228 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 196 4 200 223 131 35 7e-30 MIQMENVTKQYANGVTAIKDLNLKIQDGEFVYVIGPSGAGKSTFVKMLYHELKPSSGSIK IDDFDFSTMKPSQVPFLRRHIGIVFQDFKLLPRLTVYENVAYAMQVIEAPDDKIKDRVLE VLGLVGLEQKLRRFPDELSGGEQQRVSVARAIVNKPKVLIADEPTGNLDPQTSDEIVDIL ERINANGTTVIMATHNKDIVNERQHRLLEIAGGRLVRDEEGGTYGNEE >gi|225002533|gb|ACIZ01000046.1| GENE 11 10372 - 11259 833 295 aa, chain + ## HITS:1 COG:L2 KEGG:ns NR:ns ## COG: L2 COG2177 # Protein_GI_number: 15672955 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Lactococcus lactis # 6 294 5 310 311 256 44.0 2e-68 MKSKVFFRHVKDSLRSLRRNGWMSVAAVSAVTVTLLLVGIFMALIFNLHHISQQVENDVQ VRVYIDKKTTTKQRDDLKDKLKKLDHVNKVTYRSRQQELDTIIGGYGSQWRMFSGDQNPL SDVFMVKTNSPKATISVSKEAQKLDHVVDASYGGRTAKKLFNSVDVAQKWGLAFTILLLF VAVFLINNTIRITILSRSDEIRIMRLVGATNSYIRWPFLLEGAWTGLFGAVLPIIIVDVG YAIVYRSFTYANGASGYTLYANMPFLFWLDLMLAGIGIVIGALGSVISMRRFLKF >gi|225002533|gb|ACIZ01000046.1| GENE 12 11530 - 12627 679 365 aa, chain + ## HITS:1 COG:BH3598 KEGG:ns NR:ns ## COG: BH3598 COG0265 # Protein_GI_number: 15616160 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Bacillus halodurans # 15 363 23 390 398 85 25.0 1e-16 MAVIIALLISPIGAVFWLALGLTILYAVSRTSRERHQYLRAIHPRHSEIAPFFWVGILLG IVISALMLVARLQVSLPALLALSGLTLVGLIFSGWRFSPWWLGLAGLVELLRPTTSQMSA DLAVLVGVLWLAQALIARLNRGTQIESPVILQDRRQRQQVAFRLRQFYWVPLFLPVSVDQ VAGLPLLSIATDTFVAVGLPLVLGAAFTTQRDRVQPYLRRSWPWFAVAGGGLIVFGLVGR ILTIPVMVIALIPVLVSLILGAGLIWQAHQVHLNVTQTNHGVVVIGVVPQTPAAQMDLQP GDRVLTCNHIAVNNAAELYNAIQKEPTYCRLRLQQADGEIRLAETAIFAGAPHELGMILF PEETA >gi|225002533|gb|ACIZ01000046.1| GENE 13 12624 - 13328 772 234 aa, chain + ## HITS:1 COG:BS_phoP KEGG:ns NR:ns ## COG: BS_phoP COG0745 # Protein_GI_number: 16079963 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 2 232 3 236 240 250 53.0 2e-66 MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSG LDVTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRS QSQPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRD ALLNGVWGFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQMEAPHE >gi|225002533|gb|ACIZ01000046.1| GENE 14 13321 - 14988 1299 555 aa, chain + ## HITS:1 COG:lin2643 KEGG:ns NR:ns ## COG: lin2643 COG0642 # Protein_GI_number: 16801705 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 197 547 233 588 591 244 41.0 4e-64 MNKRILRRVLVISLLSLAGFFVLVTTVNQQIVHQQARDLRRVARTYAASAKDGVDPQALA KSEAAFITVVPDNPKTTRQKVMADALRGNHREPFVTTVNVLGRAEQAYLFRHRGHWVAIS RYKSSVWTTAPEQFWILTLTFAVLIALILAWLFRSEHQYQEAIRVMSHNLDRIRQKKEPE PVILPPQSPFTPVARRINALAAEQTHLREKVAVRQSSFDRLIDNLPLGVMLIDTNKDVIL HNHAMSQLLGHQIPQPRHNYLDDVKTYALARMIEHTFRHEKTHHQELTVLATQKSVDASV IPLNQGTSRLQVLVILYDVTYLRQVEKMQLDFVGNVSHELKTPVTAISGFAETLLSGAKN DPATLDKFLKIIFDESKRLTQLINDILTLSRPESNQTVQAQVPLKKLVDDALRNLAKVIK DKQIRVEVAIAPDLQVVTDERKLTQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLSLAVA DTGIGIPETEQARIFERFYRVDKARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGS TFTVTLPVSKRQQQD >gi|225002533|gb|ACIZ01000046.1| GENE 15 15078 - 15944 808 288 aa, chain + ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 4 286 8 299 302 328 58.0 7e-90 MKKIVTLFSIVFLALLASACGSSHSSKQSGESITAVGSSALQPLVEAAGEQYQTENLGVF INVQGGGSGTGLSQIQQGAVDIGNSDLFAEEKPGIKANALVDHKVAVVGIAPIVNPKVGV KNVSMTQLQQIFLGQITNWKQLGGKNVPIVLVNRAQGSGTRATFEKWALEGKQPIAAQEQ DSTGMVRQIVGSTPGAISYVAFSYVDKTVRSLSVDGVAPTDSNVATNRWHIWSYEHMYTK GRPSGLTKRFLTYMMSPAIQKKLVQKMGYIPMTKMKVVRNASGQISRP >gi|225002533|gb|ACIZ01000046.1| GENE 16 16092 - 17015 644 307 aa, chain + ## HITS:1 COG:lin2641 KEGG:ns NR:ns ## COG: lin2641 COG0573 # Protein_GI_number: 16801703 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 1 302 1 303 307 357 66.0 2e-98 MDPIREAMLKKSRSSKLERRGKTISLICISLIVLVVVAIFFFVASKGLATFFQNKINLWS FLSKSVWNPSIKDAHGNPEVGALPMIVGSFGVTFLSAIVATPFAVGAGIFMTEISHKWGQ KVLQPVIELLVGIPSVVYGFIGLSVIVPFIRHIFGGTGFGILAGTFVLFVMILPTVTSMT VDALKAVPRHYREASLALGATRWQTTYRVVLRAAIPGILTGIVFGMARAFGEALAVQMVI GNAALLPKNLVSPASTLTSVLTSGIGNTVMGSLENNALWSLALLLLLMSLAFNLLIRWIG KKGELNK >gi|225002533|gb|ACIZ01000046.1| GENE 17 17012 - 17896 773 294 aa, chain + ## HITS:1 COG:SPy1243 KEGG:ns NR:ns ## COG: SPy1243 COG0581 # Protein_GI_number: 15675203 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 294 1 294 295 385 69.0 1e-107 MNPKVVDKIATTVLYIVSGIIIVILASLLGYILFKGVPHISWHFLTSPAQSFEAGGGIGI QLFNSFYLLVLAMLISTPISLGAGIYLSEYAKKNWLTDVIRTSIEILSSLPSVVVGLFGF LIFVLQFKFGFSILSGALALTVFNLPLLTRNVEDSLRGVGFEQREAGLALGLSRWETVLH VVIPEALPGIITGMILGAGRVFGEAAALIYTAGQSAPALDFTNWNPANIASPLNPFRPAE TLAVHIWKINSEGIQPDAVAVSAGASAVLVIAVLVFNVGARYLGNRLFKKMTAA >gi|225002533|gb|ACIZ01000046.1| GENE 18 17967 - 18785 275 272 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 26 259 2 231 245 110 33 1e-23 MQELEKYSLDDTYIRPFDRERQEIALETEDLHVFYGDNEAIHGVSLPFERYKITALIGSS GSGKSTYLRSLNRMNDNIESARVTGKIMYRNIDINSDAVDVYEMRKHIGMVFQRPNPFAK SIYDNIAFALRRFGIKDKKKLDEIVETSLKQAALWDQVKDDLNQSGMSLSGGQAQRLCIA RAIAMKPDILLLDEPASALDPISTSAVEDTLLSLKDKYTIIIVTHNMQQAARISDYTAFF YSGAALEYDETRKIFTRPKIKATNDYVSGHFG >gi|225002533|gb|ACIZ01000046.1| GENE 19 18795 - 19559 325 254 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 7 249 1 239 245 129 34 2e-29 MAEAQKIITSSDVHLFYGKFEALKGINLDFNEHEITALIGPSGCGKSTYLRTLNRMNDLI PGVTITGTISLRGQNIYAPSEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDK SILDEAVETSLKQAAIWDEVKDHLHDSALSLSGGQQQRVCIARVLAVKPDVVLLDEPTSA LDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP KEKETEDYITGRFG >gi|225002533|gb|ACIZ01000046.1| GENE 20 19570 - 20247 620 225 aa, chain + ## HITS:1 COG:lin2637 KEGG:ns NR:ns ## COG: lin2637 COG0704 # Protein_GI_number: 16801699 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Listeria innocua # 1 217 3 218 219 217 54.0 1e-56 MRRLFVDELNDLHVRFSEMGMMVNEAIYKSVKAFINHDKALAREVIHEDKHINEREVDLE KRSFELIALQQPVTTDLRVIVTVMKASSDLERMGDHAVSIAKSTIRVKGETRVPQIEADI AGMADAVKEMVEQVLDAYVKEDSARARKIALEDHGINDFSSRIYKECIRQMQENPETVVG SMDYMLVSSYLERIGDYVTNICEWIVYLKTGKITELNSNAIEDKF >gi|225002533|gb|ACIZ01000046.1| GENE 21 20954 - 22444 1287 496 aa, chain + ## HITS:1 COG:lin2630 KEGG:ns NR:ns ## COG: lin2630 COG3595 # Protein_GI_number: 16801692 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 182 494 103 415 416 145 28.0 2e-34 MNERERILDLVKKGVISSEEALVLLENLAKQQGTQAGSPADDTAPEAHSEQTETDDQSTQ EQQEANKDTDAALTELNTEIAEAAGALDAATAQVTSISKQIEANNEQIIVLDTMEDLEAL SPEKYQKRGELKQENQKLNDQLAELKGQVETMKANLATLRRQKHDLERQKISDKIFNDDW QKDARDVFSEFGKNIGDATSQLGGFVKDTVNNVLDNVDWKNVTVTVPGLATEKFEHVFKF PDSQATILDVKVANGDVKFKTWDQPGIQVEAAIKLYGKMDADSPFEAFKDRSRIDVTDDH FSFQVPNKRVQADLVISLPKRTYDHVSVRLLNGSADLTGLNGKDFYVKSTNGQMNFTNVD GVMIESEGVNGSIKVQGGHTHDLLLTTVNGDVSVDADPATAALKTVNGTVRATYHTDFTK IEGTSMNGNVKVAVPASIALKGEARTHFGSIKSRLSNVAEPAKGLKRFELDRPGTGNSEL KLNTTSGNIQLKDSND >gi|225002533|gb|ACIZ01000046.1| GENE 22 22456 - 22716 277 86 aa, chain + ## HITS:1 COG:no KEGG:LGG_00915 NR:ns ## KEGG: LGG_00915 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 86 1 86 86 162 100.0 3e-39 MPFLIIPIMFFIVGLVLVAVFAIGIFLLKLLIVPALLVVLAVWLFSRHDHEKRQGPRHPY RDQSTSRPRKNATHVTESRDDDWSDF >gi|225002533|gb|ACIZ01000046.1| GENE 23 22719 - 23054 428 111 aa, chain + ## HITS:1 COG:no KEGG:LGG_00916 NR:ns ## KEGG: LGG_00916 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus # Pathway: not_defined # 1 111 1 111 111 112 100.0 4e-24 MNFIKRAVITTAVFLIYAQVFPGQLFVASFGVAVVGALVLGVLNGLLRPILVVLSIPITI LTLGLFLIVLNGLMLSMMTWFVPGIVFSSFGSTMVLAIIISVLNMIFVGKH >gi|225002533|gb|ACIZ01000046.1| GENE 24 23322 - 24281 885 319 aa, chain + ## HITS:1 COG:lin2626 KEGG:ns NR:ns ## COG: lin2626 COG1493 # Protein_GI_number: 16801688 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Listeria innocua # 1 310 1 309 312 379 61.0 1e-105 MADSVTVRQLVKATKLEVYSGSEYLDARQVVLSDISRPGLELTGYFNYYPHERIQLFGRT EISFARNMSSEERLLILKRMATEDTPAFLVSRGLQPPAEMITAATAAHIPVLGSRLPTTR LSSLITEYLDSQLAERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDR VDVYQQDEQTVVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPD KTFDRLGSGEQTQMIFDVPVPKITIPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKN LNHLIEHNEANDQKSSEEK >gi|225002533|gb|ACIZ01000046.1| GENE 25 24283 - 25110 719 275 aa, chain + ## HITS:1 COG:lin2625 KEGG:ns NR:ns ## COG: lin2625 COG0682 # Protein_GI_number: 16801687 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Listeria innocua # 5 267 8 267 277 280 55.0 3e-75 MLLTLNPIAFQLGGLEVHWYGIIIASAVLLAVYLAMKEAPKRGIKEDHILNLILWALPFA LIGARLYYVAFEWSYYAAHPSEIIAIWHGGIAIYGALIASVIVFAIYCRVKWLPAWLVLD IAAPTVMLAQAIGRWGNFMNQEAHGAITSLAYLRGLHLPEFIIQQMNIGGAYRQPTFLYE SMWNLVGFALIMTVRHHQHWFKQGEIVLSYVMWYSFGRFFVEGMRTDSLYVIPGLRVSQL LSIVLFVVAAGLIWYRRRRGDVAWYLDGNPLQAVE >gi|225002533|gb|ACIZ01000046.1| GENE 26 25121 - 26176 937 351 aa, chain + ## HITS:1 COG:L0016 KEGG:ns NR:ns ## COG: L0016 COG0240 # Protein_GI_number: 15673320 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Lactococcus lactis # 2 345 3 339 341 370 56.0 1e-102 MPTKIAVLGAGSWGTVLANLLTENGHEVDLWSHNLKQVATMRETRKNEHYLGAEFTLHDA LHVTADLGQALDQANVILFVVPTNAIRSVAEQIRPILQAHRGRGEQPIIVHAAKGLERGS ELRISQVLADVLPKELIQGIVVISGPSHAEDVATHDITTLTAASADLSLAKKVQRLFMNN YFRLYTNTDVIGVEIGAALKNVIAIGAGALHGLGYGDNTKAALMTRGLAEISRVGVKLGA DPLTFIGLSGVGDLIVTCTSVHSRNWRAGNALGQGEKLPDVLKNMGMVVEGVSTTKVAHH MASELGVDMPITDAIYQVLYEDAPIRTVITDLMKRTGKPEFDFDNASLQKP >gi|225002533|gb|ACIZ01000046.1| GENE 27 26242 - 27189 605 315 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 5 306 2 306 306 237 43 7e-62 MAKKYDVIVIGAGPGGMTAALYASRANLSVLMLDRGVYGGQMNNTAEVENYPGYKSILGP DLGQKMYDGATQFGAEYAYGNVISVQNHGATKLVKTDEDEFEAKAIVIATGAEHKKLGVP GEEAFSGRGVSYCAVCDGAFFKDRELAVIGGGDSAIEEGLYLTQMAKKVTVIHRRDQLRA QQIIQKRAFANDKMHFVWNAQVQEIQGDDMKVTGVKYRDKETGEEHVLPVAGVFIYVGIM PMTEPFQDLGILDDHGWIPTDEHMRTKVPGIFAIGDVRAKDLRQITTAVGEGGTAGQGVF NYIQSLNDTSVEVKA >gi|225002533|gb|ACIZ01000046.1| GENE 28 27441 - 29168 1639 575 aa, chain + ## HITS:1 COG:SP1498 KEGG:ns NR:ns ## COG: SP1498 COG1109 # Protein_GI_number: 15901345 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pneumoniae TIGR4 # 1 573 1 572 572 637 55.0 0 MSYRDTYQQWVDEPTLDPELKTDLKKMADDETTKEEAFAEPMAFGTAGMRGVLGAGIGRM NIYTVRQATEGLARFMDTLTDETKARGVAISYDSRYMSQEFAYQSAGVLGAHGIKSYVFD QLRPTPELSFAVRHLKTYAGIMITASHNPKQYNGYKIYGPDGGQMPPEESDKITKYARSA DDLFAIKALNVHELRAKDLMQPIGEDVDEAYYAEVATVTINHDLIKTVGKNMSLVYSPLH GTGRIPAQMVLRNAGFENFRLVAKQSVADPEFATTPFPNPEFAQVFDLPIELGKKIGADV LIATDPDADRLGTAVKVGDHYQLLTGNQIASVLLHYILEARKQAGTLPKNGAVVKSIVST ELATAIAKDYGVDMINVLTGFKFIGDQIKHFQATGEHEFLFGFEESYGYLIKPFVRDKDA IQSTVLLAEVAAYYQSQGKTLWDGVQELYKKYGYYAEKTVGVDFEGVDGPKQMANLMTKF REEQPDDFAGVKIAKVEDFLSQEAKSADGTVEKLTMPSSNVLKYILADGTWIAIRPSGTE PKVKFYVGTKADTDAKAQEKLDAFEKALDAFRKEA >gi|225002533|gb|ACIZ01000046.1| GENE 29 29431 - 30078 600 215 aa, chain + ## HITS:1 COG:CAC0524 KEGG:ns NR:ns ## COG: CAC0524 COG0745 # Protein_GI_number: 15893814 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 4 211 5 219 228 135 41.0 6e-32 MTYLIIEDEPALGKTLQTYFSRDEEVWLAATLAKATTIVKTEHPALIILDLGMPDGDGLA WLKRWRAYLTAKVIVLTANDDESTTIAGLDLADDYVVKPVSLKVLKARIAKQLPGESQQF GAVALNLRTGQVTKNGKPVRLTSAEQRLLAYFFVNPNQILTREQLLAALWDTREQFVADN TLTVTIKRLREKLEDDPAKPTLIRTVRGMGYFIDG >gi|225002533|gb|ACIZ01000046.1| GENE 30 30071 - 31081 733 336 aa, chain + ## HITS:1 COG:CAC0525 KEGG:ns NR:ns ## COG: CAC0525 COG0642 # Protein_GI_number: 15893815 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 16 327 7 319 329 124 27.0 2e-28 MVKHAYWTMPETRQVFQLTAILIGILWTVLLLTSITVPDMRIWLVLVGGLATGISVWLTW CWARKFSYHFDQALLQLDMTKETEDNYLIDRNDEGLFSDFNNRLYHYARQMQAEREAIKR DRDHLNEAITDIAHQLRTPLAANSNLLEMMTESNWKTTRLALQAQQQHQAQLIEQLILLA KVDTHTLSQRREIVVLTDLGKAALSPFLRQIADKEITVDWQVPPALTINVNSVLVKEAFA NVFKNAVAHTPVGGRMSVRGIGDPVRTRLMIMNTGQPIAAQDLPHLFERFYRGQYATANN VGIGLAIAAGITTANDGRLTAANTANGVQMTFEFFR >gi|225002533|gb|ACIZ01000046.1| GENE 31 31181 - 31846 324 221 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 3 198 4 199 223 129 38 3e-29 MAILTARQLTKQYAGEAHPALDHANLTIEQGEFVAIVGPSGSGKSTLLHLLGGIDQPTSG EVRLYDTDIYALNQTQLAIFRRRQVGLIYQFYNLIPNLTVAENITLPADLDGRSIKEAVL TEMLTTLGLVEKASALPNQLSGGQQQRVAIGRALINHPAVILADEPTGNLDRRNSQDVMT LLRQANIKQGQTLVVITHDPDIASQADRIVRIDDGVVSGGR >gi|225002533|gb|ACIZ01000046.1| GENE 32 31851 - 32198 363 115 aa, chain + ## HITS:1 COG:no KEGG:LC705_00973 NR:ns ## KEGG: LC705_00973 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 115 2 116 298 193 100.0 2e-48 MGIVGHLTKEQLLGQKARTVTTILAMAVAATLTLATLIGIYSARHSMYQKNIQSTGGMQF AISQLDRQTAKAIGKDSAIAKSVVYQRQGTVDIKEPGVAKTMASPLLTLPKAAMQ >gi|225002533|gb|ACIZ01000046.1| GENE 33 32211 - 32744 392 177 aa, chain + ## HITS:1 COG:no KEGG:LC705_00973 NR:ns ## KEGG: LC705_00973 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 177 122 298 298 315 99.0 5e-85 MVLAGRLPKQPNEAILAQDLVTKQYRIGQIIQSRQQGKNIQLRIVGSYRGYAGLLPPDGV LTLGTVTGSKDYTVAAAFRDYSNFYGKLHALTSQHRVHSRQLAINNMALERAGESRDVKL RVMFALLVVVILSVIGFVSLALIYTSINLSVRSQTQRYGLLRSIGATPKQLRRLVYS >gi|225002533|gb|ACIZ01000046.1| GENE 34 32910 - 34217 691 435 aa, chain + ## HITS:1 COG:CAC0527 KEGG:ns NR:ns ## COG: CAC0527 COG0577 # Protein_GI_number: 15893817 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 305 431 732 858 863 70 32.0 5e-12 MFLVTLVAAWRPAHRAASVSPIAAVQMLPESVKISRRSRRLSPIERLLRSPTAKLAYKQY RRLGWSKLTMIATLSLSLMIFIGLTGFFRSVLTLNNETFTQQADVTIASTAAVDAIPWTF EPSEDAGIKQATVTGTKQMQLAHAPKAFGDKINIIVVSDRLFQTAFQNQPTVLTSSQLVV NSKTGQREQRWQLPRDFSGTLQLINRRGEKQFTQSIRVVTKTTAALGKWQFGDQSGLVLS RDRYLKLLKALAINDRELDYSIQTQLTQAKFHDSVAKILRKMVPQGALNDQIANRAQESS FGLAIQVMVYGFLTLLTLVSLANIVNHIFANLLQRRRSLAMLQSVGMTPRQITSMIGLEN GFLFGTSLVIGSILGTGLTWLLYRVANTGIAFNYRVPWQEILIAGGMLMLIWAVFTGVSH QILKHQDLDQLIWLS >gi|225002533|gb|ACIZ01000046.1| GENE 35 34804 - 35451 719 215 aa, chain + ## HITS:1 COG:lin2634 KEGG:ns NR:ns ## COG: lin2634 COG1896 # Protein_GI_number: 16801696 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Listeria innocua # 1 206 1 206 215 261 63.0 8e-70 MGMHQFIQGLSNLETLRRAPGFFKYQEHSVAAHSFKVAEIAQMLGDVEELAGNKVNWQML YEKSLNHDYTERFIGDIKTPVKYATPTLRQMLADVEATMTENFIKNEIPHDFQDRYRRRL SEGKDETLEGQILSVADKIDLLYEGFGEIEKGNPEQVFLDIYSESLSTILQFKNRPSVRY FLDEVLPDMLDEKFASRDQLAKLTKETMAEHETGK >gi|225002533|gb|ACIZ01000046.1| GENE 36 35844 - 37859 1987 671 aa, chain + ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 668 1 660 662 934 72.0 0 MIERIADRKFDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIAN LNKPTLILSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAI NDEIDKLRHSATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQ LVDIQFDRNDIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVI GTRDHVAIFPATHFMTSDEQMERAIKSISAELEDRLKVLRGENKLLEAQRLEQRTNYDIE MMREMGFTSGIENYSRHMDGRKPGEPPYTLLDFFPKDFTIMVDESHVTMPQVKGMYNGDR ARKQMLINYGFRLPSALDNRPLKIDEFEKHVKRILYVSATPGPYELSRVPKEDIAEQIIR PTGLLDPKIEVRPVMGQIDDLVGEINKRIDAHERVFITTLTKKMAEDLTDYLKDMGIKVR YLHSDIKTLERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERS LIQTIGRASRNEHGKVIMYADKVTDSMKAAIDETRRRRAIQEKFNEEHHIQPKTIIKPIR AAISTYEQSDDEKADAKKTFAEVDYEDMSKADKKELVANLRSQMQAAAKKLDFEQAASLR DTILELQADMS >gi|225002533|gb|ACIZ01000046.1| GENE 37 38040 - 40934 2011 964 aa, chain + ## HITS:1 COG:SPy1825 KEGG:ns NR:ns ## COG: SPy1825 COG0178 # Protein_GI_number: 15675653 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pyogenes M1 GAS # 4 935 3 937 942 1412 74.0 0 MANDKIVIHGARAHNLKNIDVTIPRNKLVVMTGLSGSGKSSLAFDTLYAEGQRRYVESLS AYARQFLGQMEKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGHP ICPNDGTPITSQSVEQMVDRVLALPEKSRIQILSPIVRRKKGSHKKVFAKIMREGYVRMR VDGEVMDATADYELDKNKAHDIDIVIDRIVVKPEARSRLFDSFEAALRLSEGYANVDVIG GDTLRFSEHFACPICGFTIGEMEPRLFSFNAPFGACPECDGLGVKLTVDMDLVVPDPSMT LAQGAIAPWNPISSQYYPELLAQAATAFKVRMDVPFKKLTKRERNVVLNGSDGKPFHFHY ENDFGGVRDVDVPFEGVLTNISRRYAETNSDFTRQQMRGYMTALPCPVCHGKRLNRQALA VKISGRDIAEVSDLAIKDALPFFKQVHLSEAETVIAQPIVKEVVDRLTFLVNVGLGYLTL SRSAGTLSGGEAQRIRLATQIGSNLSGVMYVLDEPSIGLHQRDNDRLIASLKKMRDLGNT LIVVEHDEDTMRAADYLIDVGLGAGEHGGRIMASGTPKQVARVRKSITGQYLSGRKFIPV PLKRRPGNGKVIRLEGASDHNLKHINVDFPLGKFIVVSGVSGSGKSTLVNSILRRALAQK LNHNSEKPGPYDKILGYKNIEKLINIDQSPIGRTPRSNPATYTSVFDDIRGLFAETNEAK LRGYKKGRFSFNIKGGRCENCKGDGIIKIEMNFLPDVYVPCEVCHGKRYNSETLEVTYKG KNIAEVLDMTVEEATAFFKNIPKIRRKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLAS ELQKLSTGKNFYILDEPTTGLHTDDIKRLLEVLERLVDEGNTVLVIEHNLDVVKTADWVI DLGPEGGDGGGQVIATGTPEEVAEVADSYTGQYLKPVLIRDTKRTKEAAAGSSKQAKATK TSTK >gi|225002533|gb|ACIZ01000046.1| GENE 38 41136 - 41675 612 179 aa, chain + ## HITS:1 COG:no KEGG:LC705_00978 NR:ns ## KEGG: LC705_00978 # Name: not_defined # Def: integral membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 179 1 179 179 230 100.0 2e-59 MLNRKSFGFDWGQFITGILFLIAAFVVLRYPLATLKTVTFIFAVVAIIRGIAILAGYSTL RQFTGKLAWISLLMGIFDLVIGLVFLLNAGFGMATITMMFAIWFLVDSVGSLFNVGHLRI AGTGWFILYLILDILAVIVSLMLFMQPVVAAVTLVTLLAMFFVLFGIECIVIAFARRNI Prediction of potential genes in microbial genomes Time: Wed May 25 19:44:13 2011 Seq name: gi|225002532|gb|ACIZ01000047.1| Lactobacillus rhamnosus LMS2-1 contig00050, whole genome shotgun sequence Length of sequence - 36670 bp Number of predicted genes - 37, with homology - 36 Number of transcription units - 18, operones - 11 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 131 - 190 6.5 1 1 Op 1 12/0.000 + CDS 214 - 1101 785 ## COG1660 Predicted P-loop-containing kinase 2 1 Op 2 12/0.000 + CDS 1098 - 2126 927 ## COG0391 Uncharacterized conserved protein 3 1 Op 3 . + CDS 2131 - 3078 721 ## COG1481 Uncharacterized protein conserved in bacteria + Term 3183 - 3226 2.0 + Prom 3109 - 3168 4.1 4 2 Tu 1 . + CDS 3369 - 3824 530 ## COG1846 Transcriptional regulators + Term 3831 - 3888 11.3 + Prom 3838 - 3897 6.0 5 3 Tu 1 . + CDS 3944 - 4534 639 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Term 4551 - 4588 5.1 + TRNA 4854 - 4925 33.4 # Arg CCG 0 0 + Prom 5561 - 5620 4.7 6 4 Op 1 5/0.000 + CDS 5730 - 6767 726 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain 7 4 Op 2 26/0.000 + CDS 6804 - 7826 773 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 7862 - 7899 8.1 + Prom 7912 - 7971 3.9 8 5 Op 1 13/0.000 + CDS 8009 - 9199 1394 ## COG0126 3-phosphoglycerate kinase 9 5 Op 2 . + CDS 9277 - 10032 792 ## COG0149 Triosephosphate isomerase 10 5 Op 3 . + CDS 10080 - 11384 1257 ## COG0148 Enolase + Term 11405 - 11452 8.5 + Prom 11395 - 11454 4.5 11 6 Tu 1 . + CDS 11553 - 11927 320 ## LGG_00937 hypothetical protein + Prom 12183 - 12242 7.0 12 7 Tu 1 . + CDS 12265 - 13845 1195 ## COG0038 Chloride channel protein EriC + Prom 13847 - 13906 2.4 13 8 Tu 1 . + CDS 13947 - 14315 389 ## LGG_00939 hypothetical protein + Prom 14320 - 14379 5.8 14 9 Op 1 4/0.000 + CDS 14475 - 14711 216 ## COG1314 Preprotein translocase subunit SecG + Term 14718 - 14752 5.3 + Prom 14723 - 14782 5.5 15 9 Op 2 4/0.000 + CDS 14887 - 15621 674 ## COG1647 Esterase/lipase 16 9 Op 3 10/0.000 + CDS 15623 - 17992 1617 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 17 9 Op 4 . + CDS 18029 - 18502 542 ## COG0691 tmRNA-binding protein + Term 18559 - 18605 10.2 + Prom 18659 - 18718 5.2 18 10 Op 1 3/0.000 + CDS 18846 - 20618 1238 ## COG0366 Glycosidases + Term 20681 - 20731 3.1 19 10 Op 2 11/0.000 + CDS 20748 - 23009 1743 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 20 10 Op 3 . + CDS 23002 - 23673 691 ## COG0637 Predicted phosphatase/phosphohexomutase + Prom 23720 - 23779 6.7 21 11 Op 1 . + CDS 23813 - 24115 249 ## LGG_00947 hypothetical protein 22 11 Op 2 . + CDS 24176 - 24478 319 ## LC705_01004 hypothetical protein 23 11 Op 3 . + CDS 24468 - 24656 109 ## COG1476 Predicted transcriptional regulators + Term 24659 - 24707 9.2 - Term 24647 - 24693 9.6 24 12 Tu 1 . - CDS 24706 - 25950 1134 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily - Prom 25990 - 26049 4.6 - Term 26040 - 26086 9.2 25 13 Op 1 14/0.000 - CDS 26146 - 27459 1133 ## COG1653 ABC-type sugar transport system, periplasmic component 26 13 Op 2 38/0.000 - CDS 27469 - 28290 712 ## COG0395 ABC-type sugar transport system, permease component 27 13 Op 3 10/0.000 - CDS 28307 - 29200 805 ## COG1175 ABC-type sugar transport systems, permease components 28 13 Op 4 . - CDS 29190 - 30251 1016 ## COG3839 ABC-type sugar transport systems, ATPase components + Prom 30210 - 30269 2.5 29 14 Op 1 . + CDS 30357 - 30533 80 ## 30 14 Op 2 . + CDS 30550 - 31122 527 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 31161 - 31217 18.5 - Term 31154 - 31200 1.3 31 15 Op 1 . - CDS 31265 - 31771 446 ## LGG_00956 hypothetical protein 32 15 Op 2 . - CDS 31819 - 32712 911 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 32750 - 32809 6.1 + Prom 32708 - 32767 5.1 33 16 Tu 1 . + CDS 32832 - 33521 531 ## COG0692 Uracil DNA glycosylase + Prom 33608 - 33667 5.7 34 17 Op 1 . + CDS 33697 - 34674 956 ## COG0280 Phosphotransacetylase 35 17 Op 2 . + CDS 34671 - 35135 418 ## COG0802 Predicted ATPase or kinase + Term 35197 - 35239 0.8 + Prom 35244 - 35303 7.9 36 18 Op 1 9/0.000 + CDS 35341 - 36237 588 ## COG4152 ABC-type uncharacterized transport system, ATPase component 37 18 Op 2 . + CDS 36230 - 36668 324 ## COG1668 ABC-type Na+ efflux pump, permease component Predicted protein(s) >gi|225002532|gb|ACIZ01000047.1| GENE 1 214 - 1101 785 295 aa, chain + ## HITS:1 COG:SPy0652 KEGG:ns NR:ns ## COG: SPy0652 COG1660 # Protein_GI_number: 15674720 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Streptococcus pyogenes M1 GAS # 5 295 6 296 296 362 59.0 1e-100 MTESLDLVIITGMSGAGKTVAMQAFEDLGYFCVDNMPPALLPKFWELVKESGKISKVALV VDLRSRAFYDQIIDMLANLDNNAYVHSRILFLDATDEELVSRYKETRRSHPLAMEGRLMD GIKKERVLLTELRNRAQVVIDTTTLSPRQLREKIFLNFKENNSQPAFHIEVMSFGFKYGL PIDADIVMDVRFLPNPFYIKAYRPKTGLDPDVYDYVMDNEDAESFYNKFYALLAEIMPKY KAEGKTSVTIAIGCTGGQHRSVAFAERIGKAFSDAYAVDITHRDIKKHKETVNRS >gi|225002532|gb|ACIZ01000047.1| GENE 2 1098 - 2126 927 342 aa, chain + ## HITS:1 COG:L189428 KEGG:ns NR:ns ## COG: L189428 COG0391 # Protein_GI_number: 15672944 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 16 333 4 320 327 350 52.0 2e-96 MSRETKFIRVIRGRRPKVVVIGGGTGLPVILHSLHEQDADVTAIVTVADDGGSSGTIRNY INVVPPGDIRNVLVALSELPSLYLDIFQYRFNTTDAFFAGHAIGNLIIAALSEMKGGIFP AVQQLSEMMQVDGHVYPASNTPLTLNAEFTDGTKLSGEAEITAAGKNIKHISVSETDPAN GEPKAVQEVIDAIMDADVVVLGPGSLFTSILPNLMIGNLGDAVKKTKAEVIYIVNIMTQK GETQNFTDADHVRVLNEQMGENFVDTVLVNIEPVPDNYLDHQKYNEILTPVKHNYQGLRD MGCRVISEDFLKLRDRGVFHDGDKVAKEILNLAFQVSAKTRR >gi|225002532|gb|ACIZ01000047.1| GENE 3 2131 - 3078 721 315 aa, chain + ## HITS:1 COG:lin2615 KEGG:ns NR:ns ## COG: lin2615 COG1481 # Protein_GI_number: 16801677 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 3 313 2 311 323 351 59.0 8e-97 MASFASIVKKELTQLEVHPEHAKAELSALIRMNGSLTLMAHRFVLNIQTENPAIARRIYS LIRQVYHHEANLVVHRKMKLKKNYQYIVRLTEGVNDILSDLAILDPTTMAISTTVPASVL KEPQRMRSYLRGAFLASGSVNNPETSRYHLEIYSLYADHNAGILKMMNHFHLNARTVERR SGYIVYLKEAEKIADFLQVIGATNAMLKFEDIRIVRDMRNSVNRLVNCETANMNKTIDAA QKQIENINYLKDHVGLDNLPTKLREIAVLRLAHPDVSLQELGAMVPGGTISKSGVNHRLR KLNQIAEGYQQPEDA >gi|225002532|gb|ACIZ01000047.1| GENE 4 3369 - 3824 530 151 aa, chain + ## HITS:1 COG:lin2303 KEGG:ns NR:ns ## COG: lin2303 COG1846 # Protein_GI_number: 16801367 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 7 145 8 146 150 129 43.0 2e-30 MVKPITLDEQLCFAIYKAQKQYNHFYAQALAPFKLTYPQYITLLSLYEHGTMSVKQVGQT LELDSGTLTPLMKRLEKDGWINRKRSTEDERRVDVSLTKKALDARDQIFEHVGSCMKLMN LPQSEYDHIKSEVARVDEHLSAIADNAYPEA >gi|225002532|gb|ACIZ01000047.1| GENE 5 3944 - 4534 639 196 aa, chain + ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 2 196 3 197 198 271 70.0 7e-73 MLVPTVVEQTSRGERAYDIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIY LYINSPGGVITSGLAMLDTMNFIKSDVQTIAIGMAASMASVLLAGGTKGKRFALPNSTIL IHQPSGGAQGQQTEIEIAAEEILKTRKKMNQILADATGQTVEQIKKDTERDHYMSAQEAK DYGLIDDILVNKNNQK >gi|225002532|gb|ACIZ01000047.1| GENE 6 5730 - 6767 726 345 aa, chain + ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 9 343 9 343 348 311 47.0 2e-84 MHTELAWLKAIAPDLMGVVTKRYQVLQFINWMAPVGRRTLAEQMKISERALRTETDFLRG QGLLESSKSGMVLTAKGLETFHGLDHLMNQLLGIKDDEKRLATHLEIDHCLVVSGDADQS SRVLDELGKTLNSTLQLLLPPGHLTIAVMGGTTMAHLASQLTFQLSAGRELSFVPARGGL GEAVTIQANSIAAAMAEATDSKYRALYVPENLSSESYESLIKEPSVKEVLTLIDKAQVVI HSVGDALVMAKRRGMSPDTIRMLKAKHAVAEAFGVFYDAEGKVVYKIPQIGLQLADLDHI PYVFAVAAGKSKAKAIAAYMQHAPSRTWLLTDVGATNSILTGATR >gi|225002532|gb|ACIZ01000047.1| GENE 7 6804 - 7826 773 340 aa, chain + ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 340 3 333 333 450 69.0 1e-126 MTVKIGINGFGRIGRLAFRRIYELGAKSNDIQVVAINDLTSPTMLAHLLKYDSTHGTFPG EVSATDNGIVVDGKEYRVYAEPQAQNIPWVKNDGVDYVLECTGFYTSAEKSQAHLDAGAK RVLISAPAGKIKTIVYNVNDDTLNADDKIVSAGSCTTNCLAPMAYFLNQEFGIEVGTMTT VHAYTSTQMLLDGPVRGGNLRAARSAAANTIPHSTGAAKAIGLVIPELNGKLQGHAQRVS VVDGSLTELVSILKTKNVTADQVNEAIKKHTENNPSFGWNEDEIVSSDVIGTTYGSIFDP TQTEVTTAGDYQLVKTVAWYDNEYGFTCQMIRTLLKFATL >gi|225002532|gb|ACIZ01000047.1| GENE 8 8009 - 9199 1394 396 aa, chain + ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 396 1 396 396 534 72.0 1e-151 MAKLIVSDLDVKDKKVLIRVDFNVPIKDGVIGDDNRIVAALPTIQYVIDHGGKAILLSHL GRVKTEEDKAKLTLKPVAERLSELLKKPVTFVPATRGKELEDAIAKLNDGDVLLMENTRF EDLDGKKESGNDPELGKYWASLGDLFVNDAFGTAHRKHASNVGIASNMKQTAAGFLMEKE IKFLGDAVDNPKHPFIAILGGAKVSDKIGVIENLVPKADKILIGGGMTYTFYAAKGMSIG NSLVEKDKIDLAKKIMDQAGDKLLLPVDSVVAPEFSNDAPHKVVEDDIPDGYMALDIGPK TIQEFKDALKGAKTVVWNGPMGVFEMSNYAEGTLEVGRALGDLKDATTIIGGGDSTAAAK QLGIAPKITHISTGGGASLEYLEGKTLPGIAAISDK >gi|225002532|gb|ACIZ01000047.1| GENE 9 9277 - 10032 792 251 aa, chain + ## HITS:1 COG:SP1574 KEGG:ns NR:ns ## COG: SP1574 COG0149 # Protein_GI_number: 15901416 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 2 249 3 250 252 316 63.0 3e-86 MRTPFIAGNWKMNKNPKETQAFLDAVKGKLPDASKVETVIGAPAIDLTTLVAGAEGTPLK TAAENCYFEDEGAFTGETSPKALKEMGVDYVIIGHSERRGYFHETDEDINKKAKAIFKNN LLPIICCGESLAQREAGQTEDWVASQIEAALAGLSADQVKVSVLAYEPIWAIGTGKTATA DQAQEVVAHIRATVEKLYNKDTADAVRILYGGSVKPANVKELMAKPDIDGGLVGGASMDP DSFIALANYQD >gi|225002532|gb|ACIZ01000047.1| GENE 10 10080 - 11384 1257 434 aa, chain + ## HITS:1 COG:SP1128 KEGG:ns NR:ns ## COG: SP1128 COG0148 # Protein_GI_number: 15900994 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Streptococcus pneumoniae TIGR4 # 1 431 1 433 434 573 67.0 1e-163 MSIITDVLAREVLDSRGNPTVEVELYTEDGGFGRALVPSGASTGEHEAVELRDGDKDRFG GKGVLKAVDHVNNEIAKAVIGLDVTEQRLIDQTMIDLDGTPNKGKLGANAILGVSLAAAR AAADEVGLPLYQYLGGPNAHVLPTPMMNVLNGGAHSTNTVDFQEFMIMPVGAKSVREAVR MGSETFHALQALLKSKGDITAVGDEGGFAPNLKDNEEAFELLVEAIKKAGYKPGDDIALA FDVAASEMYDADTKTYTTKWSNPDKKYTTEEWTNMIDGYINKYPIVSVEDPIDENDWEGW QTFTEKMGDKVQIVGDDLFVTNTDYLKKGIDMGVANSILIKLNQIGTLTETFEAIEMAKE AGYTAVVSHRSGETEDTTIADLVVATNAGEIKTGSMSRTDRIAKYNQLMRIEDQLGAQSQ YKGRKSFYNVKAID >gi|225002532|gb|ACIZ01000047.1| GENE 11 11553 - 11927 320 124 aa, chain + ## HITS:1 COG:no KEGG:LGG_00937 NR:ns ## KEGG: LGG_00937 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 124 1 124 124 186 100.0 3e-46 MRKFFAIFAWLEIILGLAMLWMTFDVGLRATGPFFGALIVLIGIVLLYGLLIYALVGWFI DRQHWPWYVVTLVVTLIYNVLAWSFPKIMVQRWATYPFPMLTLILGCLMAWIAWREQSVT HKSV >gi|225002532|gb|ACIZ01000047.1| GENE 12 12265 - 13845 1195 526 aa, chain + ## HITS:1 COG:SP1157 KEGG:ns NR:ns ## COG: SP1157 COG0038 # Protein_GI_number: 15901022 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Streptococcus pneumoniae TIGR4 # 35 508 41 512 516 317 44.0 5e-86 MARTVKEKEKFDITRLRFVLLGLLVGLMTGTVVSAFRYCIEVGLRASRQVYGYLRVTPFV WWHWALLIGFNLVLAGIVAWLLKKEPYISGSGIPQVEGQLAGELEMNWWSILWRKFVGGV LALAPGLFLGREGPSIQLGASVGQGLAGGFKLRGTDRRLLIASGSAAGLAAAFNAPIAGT LFVLEEVYHNFSPLVWLTALAGAIGSDFISLNVFGLVPVLHLSYSRSLPVTSYWHLILLG ILLGLLGYLYQRMLLAMPRWYQRLTHLPRAIQGVVPFMLLMAVGYFTPNLLGGGNSLIVG FGQYVPSLLVLLGIFVIRFIFSMISYGSGLPGGIFLPILSLGAVIGAVYGVVMNQLGLLP HVYIMNLIIFSMAGYFAGIGKAPFTAILLVTEMVGNLTHLMPLAVLSLTAYLVVDLLGGA PIYEALLEQMTIPKTVAQLHRPDRLEIPVFVGSSLNGKLVRDMPWPKEALLIGIRRGERE VIPHGDTLIREGDTLVLLTDEAQRARVKRRIDAFSAALATAHKSEP >gi|225002532|gb|ACIZ01000047.1| GENE 13 13947 - 14315 389 122 aa, chain + ## HITS:1 COG:no KEGG:LGG_00939 NR:ns ## KEGG: LGG_00939 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 122 1 122 122 200 100.0 1e-50 MKKLRIVYAIVSIFLGLFYSIGGELGLLTSSGSGVASFLVPFLLGFVANWGMIALVIAGL IVDKQMRWWYLGYPALMGINIGLNLILPLQLADQASYLAPFLVAIIGGYMLYRTVKQRPD AA >gi|225002532|gb|ACIZ01000047.1| GENE 14 14475 - 14711 216 78 aa, chain + ## HITS:1 COG:lin2545 KEGG:ns NR:ns ## COG: lin2545 COG1314 # Protein_GI_number: 16801607 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Listeria innocua # 1 75 1 75 77 56 45.0 1e-08 MQSLLTTLLVIDSVLIVIATLMQPSKQQDALSALSGGATDLFGKTKSRGFEAFMEKVTVV LGVIFFGLAIALVYLEAH >gi|225002532|gb|ACIZ01000047.1| GENE 15 14887 - 15621 674 244 aa, chain + ## HITS:1 COG:BH3554 KEGG:ns NR:ns ## COG: BH3554 COG1647 # Protein_GI_number: 15616116 # Func_class: R General function prediction only # Function: Esterase/lipase # Organism: Bacillus halodurans # 6 242 6 245 248 133 33.0 4e-31 MIFRKPQPFEYEGTDTGVVLLHAYTGSPNDMNFMARALQRAGYGVYVPLFSGHGTVEPLD ILTKGNPDIWWAESSAAVAHMTAKYAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPI LPGKHHLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAADLNLVKQPT FIGQAGQDELVDGRLAYQLRDALINAARVDFHWYDDAKHVITVNSAHHALEEDVIAFMQQ ENEG >gi|225002532|gb|ACIZ01000047.1| GENE 16 15623 - 17992 1617 789 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 6 724 2 705 730 627 45 1e-179 MTTVGHIRNELLATFRKNPNIDYSVQTLSRALKLSEGGDFKVLVQALNGMENDNLIHANH EGRYALGGAPKVLTGTFRGNEKGFGFVAVEGLDNDVYVPAMNTDFALDGDTVEVRIVREA RPNDSRGPEGEITKIVQRSLTTLVGEFKPFSDKDRAKSGFIGMVVSHEKKLKNFPVYVKD TGNIPQLGDMTVTEITEFPTEYHPKLMYGIVVETLGNKNDPGVDIMSLVMQNHIKTEFPD EVMDQTNAIPDHVTPEERVGRKDITDQAVVTIDGDDSKDFDDAVVVWKLPNGNFHLGVHI ADVSHYVTEGSALDQEAFDRGTSTYLVDRVIPMLPFRLSNGICSLNPGVDRLAMSCDMEI DHDGHVVNHEIYQSVIKSHARMTYNNVNKIVTDHDPEVMAEYQELVPMFEDMVELHQILY KMRHARGAIDFEENEAKIIVDDMGHPTDIVLRERGVSERMIESFMLAANETVAEHYNKQH LPFLYRVHETPDADRVKEFMEFIASFGITVPMKKGKEITPKQLQDVVTDVTGTPEEAMVN VKLLRSLKQARYSPDPLGHFGLAAKYYCHFTSPIRRYPDLVVHRLIRDYALEGTTDDVKT SWNKKLPDIATQASMAERRSIDAERAVDDLKKAEYMADKVGEEFDAVVSGVTSFGMFVAL PNTVEGLVHITRMSDDYYSFVESQMALVGERTKRTYRIGQSLRVKLDNVDIDQRQVDFSL IPDEKTPTSDLGKLVKKDDRRDRRSNGSRPSFGNNGRGGNRNQPNNQRPHKPAGAPHQGK HYNAKRGTK >gi|225002532|gb|ACIZ01000047.1| GENE 17 18029 - 18502 542 157 aa, chain + ## HITS:1 COG:L160560 KEGG:ns NR:ns ## COG: L160560 COG0691 # Protein_GI_number: 15673704 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Lactococcus lactis # 1 155 1 152 155 177 60.0 8e-45 MAKKHRQKPDNLLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRNN EAWLENVHISPYKEGNLFNVDPMRNRKLLLHKKEIRKLGQMTARQGVTLVPLRMYLKHGY AKVLIGVAEGKHNYDKRETLKRKDQEREVQRALKARY >gi|225002532|gb|ACIZ01000047.1| GENE 18 18846 - 20618 1238 590 aa, chain + ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 8 569 1 565 584 565 50.0 1e-161 MKKEGRIMNLAALLHRPESEDCFLYTDEAMRVRFHTARADVAKVTVLYGDPYWQLPDADG TNKLIYQRRSMHLIGHGQTRDHWEVTLEAPYRRLQYLFEVTGQDGAVWLYGDRGVRENHA AARHKAENYFRMPYFHAIDRVKTPDWVKQTVWYQIFPERFANGDPDNDPIGTKPWRPTDH PGREDYYGGDLQGVLDHLDDLQALGINGLYFCPIFTAASNHKYDTIDYLNVDPAFGDKVL FAKLIQAAHQRGMRVMLDAVFNHMGFGSMQWQDVLRNGEASRFASWFHIYQTPVTPFHNP LKNAGQPQYDTFAFEEKMPKLNTANPEVQEYLLTVATYWIKTFDIDAWRLDVANEVDHHF WKRFYATVTAIKPDFYVLGEVWHRAQPWLNGDEFSGVMNYPFTQQIEDHFFKRTLTAEEM VALLTDQLMYYRDQTNQVMLNMLDSHDTPRILTLAHGDEVLALQALTFTFMQTGAPCLYY GTEMGMSGGDDPDDRKPMDWSKLGSPIWKKVAELVHFRRKHAQTLGQGSTRMSVTAAGLI KVTRHGDETLTAYFNTQDHEAAVGGSAVLTQGFTNGKLAPKGFMVQVGNR >gi|225002532|gb|ACIZ01000047.1| GENE 19 20748 - 23009 1743 753 aa, chain + ## HITS:1 COG:L128690 KEGG:ns NR:ns ## COG: L128690 COG1554 # Protein_GI_number: 15673659 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Lactococcus lactis # 1 747 4 743 751 840 56.0 0 MKRLFEVDPWLVATHRLEKTDRRLQESITAVGNGYMGLRGNFEEGYSGDGLQGTYLGGVW FPDKTRVGWWKNGYPEYFGKVINAPSFLGIGITVNGQQVDLAKSHYRDFYLALDLHQGLL TRRFVYIGADVEVQFEFARFLSQTIPEAALITVNASVLKGTATITFDATLDGRVTNEDSN YDERFWIAQHEDATAKSIQLQTKPNPYAVPQFTVLLKQQLRVNGQAIVGKVTTASGWLQE QVTVHLTTGEHYQLEKDVVVVTSRDIAPDDQAAKATQLMNRVVKDDFKTHLAAHTQRWAQ RWAKSDVVIDGDPAAQQGIRFNIAQLFMTYYGEDKRLNIGPKGFTGEKYGGATYWDTEAF IVPMYLAVTPPEVTRALLQYRHDQLPGAYHNARQQGLAGALYPMVTFNGIECHNEWEITF EEIHRNAAIAFAIYQYTVYTGDESYVNHDGLEVLVGIARFWADRVHFSQHAQKYMIHGVT GPNEYENNVNNNWYTNTMAVWELQYTLARLPKGDPDIVAALAVTDQEKRHWQAIIDQMYY PTDKKLEIFVQQDGFLDKDIRPVSTIPDAQRPINQHWSWDRILRSPFIKQADVLQGLYFL NDRFSHAEKERNFDFYEPLTVHESSLSPSIHAILAAELGKMDTAVALYARTARLDLDDYN HDTQDGLHITSMSGSWLAIVQGFAGMRYDHDRLRFRPQLPKNWRRYQFKLTYRGRLLAVD VGQKVTVTLLAGPPIDLDINGETQHLEVEDDHA >gi|225002532|gb|ACIZ01000047.1| GENE 20 23002 - 23673 691 223 aa, chain + ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 2 223 1 222 226 180 43.0 2e-45 MLKGFIFDLDGVLTDTATYHLAAWHELAQRLAIHLPAAADTALRGRSRMDSLNLILRYGH QENDYDEAQKAALAAEKNQRYQTFIQSLTSADILPGIPALLKNAKQAGLKLAIASASKNA PLILQRLGLFAQFDAIVDPQSLHHGKPDPEIYRAAQELLKLQADEVISFEDAPVGIAAIK AAGQFAVGIGEASALAAADYLVSNTAQLDYNQIVAAFERYHAR >gi|225002532|gb|ACIZ01000047.1| GENE 21 23813 - 24115 249 100 aa, chain + ## HITS:1 COG:no KEGG:LGG_00947 NR:ns ## KEGG: LGG_00947 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 100 1 100 100 172 100.0 5e-42 MKKMDEMERNFADHSIRIAYMMMFLMLWSSAVFQHIRTGAWNFDFFVVNVVTVVQIASYE WFKHRADSTDKEPGRVLYMTIAGVAIVLAVGVLALMRHGK >gi|225002532|gb|ACIZ01000047.1| GENE 22 24176 - 24478 319 100 aa, chain + ## HITS:1 COG:no KEGG:LC705_01004 NR:ns ## KEGG: LC705_01004 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 100 1 100 100 165 100.0 6e-40 MRKMDEMELKLSDQSVKYAYVFAMTSLVFYNLFQLAHGEKGDFTSFVIGAAIVIQLGSFE WLKHRADKTDREPSRILVGTIILVAALLTLGLLMLMRHGK >gi|225002532|gb|ACIZ01000047.1| GENE 23 24468 - 24656 109 62 aa, chain + ## HITS:1 COG:L126409 KEGG:ns NR:ns ## COG: L126409 COG1476 # Protein_GI_number: 15672309 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 60 1 60 97 73 65.0 7e-14 MENKIRTLRTQQHLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALARQLQTTVDHLF QS >gi|225002532|gb|ACIZ01000047.1| GENE 24 24706 - 25950 1134 414 aa, chain - ## HITS:1 COG:PH0466 KEGG:ns NR:ns ## COG: PH0466 COG0595 # Protein_GI_number: 14590378 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Pyrococcus horikoshii # 1 381 1 493 514 79 22.0 2e-14 MTTIRFLNGLNTIGGNIVEFATKTSRVIMDFGVAADLSHETVASAIDNGKLPHVPELFFD QPDSFANEAIFISHLHIDHMGALQYLQKNIPIYLSEPSYRLYQVLIRLGIEKPVANLHPL AFESPLAIGDLTVTGFHSDHDEPGVMALLIDDGARRFAHSGDVRLNGPHADRVHAWASRF NAEKISLFLLEGTSFSFDTPTPVEDQDHPSVPLTEMSLQTKFRQLLTDSSQLVVINPYNR NYERMAAFQVSAHASGRQVVWEPNEAAILTAMTNQQPDAILGKTIQLTDLAQAPQQYVLQ NSYAHLERLADLPISAYVHSNGEPLGDYDPRFAQLKDWLADHQIPLQFMNASGHATREDL ITLAKEVNPRVIVPWHSFHPEREAEAIDAETNADVVLPERDLYYDFDALGEDDD >gi|225002532|gb|ACIZ01000047.1| GENE 25 26146 - 27459 1133 437 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 44 423 19 414 419 180 29.0 4e-45 MKKQTWVKALLAMFTVMLVAILTACGSNSSSKSSSTTKSDSGKRVTITFWHGMNGPYQKA LNQIITDFNKSQKQYKVVGTAQGNYTALQQKIMAAAKSRNLPTIAQTTYTTVPDYVKNGF ITPLDQYMLKGDDKMSSSDLKDIYPAFLSSSKYQGKYYSVPFSKSTRILFYNEALMKKYN IDKPKSWEDIKKDAEKLKADGVAAIGFDKSFDMEFEGLARQAGNPLVSANPLKANLDSKK TLTAANFIMDMVNNGEAKTAGEDIYGDKNFTSGKTLFYAGSSAGITNMKQNAPKDFKWGT MPLPSYKGKKATELAGNDIVLFKSASTDQQKGAWAFMKFLLSEKETSKWAQLTGYVPLRK SAVQSADFKKYLSDNPTSKAAVDSLGFGFQSTAFIGFSEYRNDLLNAVDAMLTKHEKPDQ ALKTLQSQAETIIKTNK >gi|225002532|gb|ACIZ01000047.1| GENE 26 27469 - 28290 712 273 aa, chain - ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 53 272 58 277 277 237 56.0 2e-62 MAKKLSKVLLYLIVILGAITMLIPFLWMISTSLKTAPETIAVPPIWIPKALQWSNYVKAW NEAPFGQYFINSIIVTVVTTVGQLFTSILAAFAFSRLKFYGKNILFIIFLGTMMIPGEML IIPNFVTLSHLGQIDHYGALILPWLASFFTVFTLRQTFQSTPDQIYYAAKIDGASDWKYL WQVLVPMSKSTITAVTVLQVIGSWNAFMWPLIVTNSDKMRTLPVGLQAFTTDAGTQYQLL MAASTFVIIPMVILYIFLQKYIIAGISKAGLKG >gi|225002532|gb|ACIZ01000047.1| GENE 27 28307 - 29200 805 297 aa, chain - ## HITS:1 COG:lin0218 KEGG:ns NR:ns ## COG: lin0218 COG1175 # Protein_GI_number: 16799295 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 16 271 15 266 292 195 43.0 1e-49 MLNEKATLKSTAKAALYLLPMLVITITFNIWPIINSFLMSLYTKYDFYTDKVSGWGFDNF VYLWNDPDFHLAVRNTLVFVIGVVPITVVLSLIIALLLNQVKIISGFFRTVYFLPFVTST VAIAMVWNWMFHGNYGLINYFMSWFGLHPINWLTDPHYALLALIIMSIWKSLGFNIILFL VGLNNIDHGYYEAAEIDGANARQRFWNITIPMLSPITFLVSVNGIIGSFKVFDEIFALFQ GTPGPGKADLTIVYYLYQKFYTEYKYPIAAASGVVLFFLILLVTLVQLWYSRKHVHY >gi|225002532|gb|ACIZ01000047.1| GENE 28 29190 - 30251 1016 353 aa, chain - ## HITS:1 COG:AGl1292 KEGG:ns NR:ns ## COG: AGl1292 COG3839 # Protein_GI_number: 15890771 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 299 3 300 370 258 47.0 8e-69 MKVTFKDVTMSYDGKKDTLKDLNFTIPDGTLVSLLGPSGGGKTTTLNLISGLLAPTAGQI FFGDTDVTKKDALARKVGMVFQNYSLYPHLSVLDNIAFPLKMAKVGKAERHAKAKDLAKL VHVEDQLDKKPGALSGGQQQRVAIARALAKSPSLLLLDEPLSNLDARLRIEMREEIRRIQ RETGVTTIFVTHDQDEALHISDNIMVLANGSIQQFSSPQTLYDQPNNLFVAKFIGEPVIN TIPAQALSADLANAVPEAILKQAVTAGIRSEAIIPYDAGENVLAKFHGKITHSSKYGREA TADIDYNGERLLSTEMAGVSSRQPELDFYITKSGFFLFDQSGALIFGGESHAE >gi|225002532|gb|ACIZ01000047.1| GENE 29 30357 - 30533 80 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWCRHFTKAYLGGGATTQLFTYFNPVSLKIGLIRLKTFDCYTTSDKTRTFGFFAIINS >gi|225002532|gb|ACIZ01000047.1| GENE 30 30550 - 31122 527 190 aa, chain + ## HITS:1 COG:lin0816 KEGG:ns NR:ns ## COG: lin0816 COG0454 # Protein_GI_number: 16799890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 2 184 1 183 185 144 39.0 1e-34 MIIRPSKPADAAQVAPLIDIVFTEMEIPQLMRVPKPTLYAVLQQAFLLPTYRYGYPQILV ADQDGHIEGIAVGYLHEQEAHIDDALRPLLPKLGLTPQSSLFTDTETYPGEWYLDTLAVA ATAQGHGIGTKLLQAVDPVARARKADVVSLNVDKQNPRAKKLYERNGFVKNGELMIGSHR YDHMIRPVGD >gi|225002532|gb|ACIZ01000047.1| GENE 31 31265 - 31771 446 168 aa, chain - ## HITS:1 COG:no KEGG:LGG_00956 NR:ns ## KEGG: LGG_00956 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 168 1 168 168 339 100.0 2e-92 MALYLDMNALSTGSLSVVKTDNGKPAYILTARHGIINGGFDLNTLSGNPLGSIRQKTVSV FPRYDLYIADRNVASVKKMFGVWHQFIFISKLNWVAMGNLLNNHYQVFHGVKTIFSAEEV APAIVKLTIPSNRDIPAAILLAAILDRFRHVGVADPLKRYEYGLDFPD >gi|225002532|gb|ACIZ01000047.1| GENE 32 31819 - 32712 911 297 aa, chain - ## HITS:1 COG:lin0668 KEGG:ns NR:ns ## COG: lin0668 COG0561 # Protein_GI_number: 16799743 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 288 1 287 288 191 38.0 1e-48 MIKLIASDMDGTLLNDKMEVSDENAQAIREAQAAGIEFMVATGRGVTEAKPLLAAQNLKP AFITLNGAMVFDEAGKLVVTIPIADDLNDYIVKTLQKDNIYFEVVTNKGVFSDSRVERIQ NVADLLVDLNPDTTYKLAVALAAARLELMNINYVDNYQELLDDPTIQIMKFIAFTGERHD ILKAPAKTFEATGKLSVTSSSANNIEVNNIKAQKGYAVEAYAKQRGITMDEVMTIGDNLN DASMIKMAKYGVAMGNAIPEITALAWDTTKTNSENGVAAAIRKAIRVNKAEASNAHF >gi|225002532|gb|ACIZ01000047.1| GENE 33 32832 - 33521 531 229 aa, chain + ## HITS:1 COG:BH3850 KEGG:ns NR:ns ## COG: BH3850 COG0692 # Protein_GI_number: 15616412 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus halodurans # 3 222 2 222 224 253 55.0 2e-67 MKTLIHNDWQTVLEPIFESSEYARLHGFLKEEYATKTIYPEMHHIFQAFEWTPFHDVKVV ILGQDPYHNPHQAVGASFAVAPGVALPPSLQNIYKELQSDLGYPPVHHGYLKAWANQGVL LLNAVLTVQAGHAYSHQNHGWEALTDAAIAALSARGGVVFILWGNAAKKKAALIDTSKNA IIASAHPSPLSASRGFFGSRPFSRTNEALEKMGETPINWQLPETVTTEN >gi|225002532|gb|ACIZ01000047.1| GENE 34 33697 - 34674 956 325 aa, chain + ## HITS:1 COG:L107797 KEGG:ns NR:ns ## COG: L107797 COG0280 # Protein_GI_number: 15673641 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Lactococcus lactis # 1 324 1 325 326 419 68.0 1e-117 MDLFESLKDKINGKHLRIVFPEGEDPRVLGAAVRLAADGLVQAIVLGNPDKIQSLAAEKS WDLSKLTVRDPEHDELHDQMVTAFVERRKGKATQEQAEKIVQNANYFGTMLVYMKKADGM VSGAVHSTADTVRPALQIIKTRPGVHLVSGAFIMQRGRDERYLFADNAINIDPDADQLAE IAVESAKTAALFDIEPPRVALLSFSTKGSAKGPQVDKVVEATKKAHELAPDLALDGELQF DAAFVPTVAKQKAPDSKVAGEANVFIFPELQSGNIGYKIAQRFGGFEAIGPILQGLNQPV SDLSRGANEEDVYKLAIITAAQTLL >gi|225002532|gb|ACIZ01000047.1| GENE 35 34671 - 35135 418 154 aa, chain + ## HITS:1 COG:lin2184 KEGG:ns NR:ns ## COG: lin2184 COG0802 # Protein_GI_number: 16801249 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Listeria innocua # 9 149 8 146 153 154 60.0 7e-38 MTSLKKDFTSEAALQAFAASLGPQLQAGDVLLLDGDLGAGKTSFTKGLAKGLGITDYVKS PTFTIIREYRHGRLPLYHMDLYRLEDGGAEDLGLEEYFEGDGVSVVEWPDFLGLSEPETD LLIHFQKDDNSDTTRHLELVPRGPRYEALLQSLS >gi|225002532|gb|ACIZ01000047.1| GENE 36 35341 - 36237 588 298 aa, chain + ## HITS:1 COG:L18206 KEGG:ns NR:ns ## COG: L18206 COG4152 # Protein_GI_number: 15673757 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Lactococcus lactis # 2 297 3 298 310 330 52.0 2e-90 MLEVKDLVKTFGTMTAVDHVSFTVKPGEIMGLIGQNGAGKTTTFRMILNFLTPDAGTISW NGQPLTAKDYDIIGYLPEERGLYPKMRVQDQIVYFARLRGMKTAEIKARIPEWLERFQVK GRATDKIKDLSKGNQQKVQVIATMIHMPKLVILDEPFSGLDPVNASLLMAGIEMLKDNGA AIIYSSHDMANVEAISDHLVMLKQGRMVLNGAVNAIRESFGRTKLFIESGLSEAELQAFD GVTHLRRHGQEFELTLADPAVGRQIFTQAVANGYIPEFRQQPPTLDEIFRLKVGESNA >gi|225002532|gb|ACIZ01000047.1| GENE 37 36230 - 36668 324 146 aa, chain + ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 102 1 100 399 61 35.0 5e-10 MHKFWVVMSQVYKKNVKSGSWIFLVLSPLLFLAIGVGIAFYVAKTQAPAQVAVVSDVSAV GQALSKQSTDDLKFKVYSSDKKANAALNDEKIDGVLTVKAADHFRSHYVARDNGQTVDTS TLVTALSGLKLSSTAASMHLTPAQVT Prediction of potential genes in microbial genomes Time: Wed May 25 19:44:52 2011 Seq name: gi|225002531|gb|ACIZ01000048.1| Lactobacillus rhamnosus LMS2-1 contig00051, whole genome shotgun sequence Length of sequence - 71965 bp Number of predicted genes - 68, with homology - 68 Number of transcription units - 29, operones - 15 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 81 - 815 546 ## COG1668 ABC-type Na+ efflux pump, permease component + Term 921 - 990 14.1 - Term 909 - 977 5.8 2 2 Op 1 . - CDS 1003 - 1545 527 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 3 2 Op 2 . - CDS 1557 - 2318 691 ## COG0708 Exonuclease III - Prom 2342 - 2401 2.9 + Prom 2720 - 2779 4.5 4 3 Op 1 . + CDS 2805 - 3704 832 ## COG0812 UDP-N-acetylmuramate dehydrogenase 5 3 Op 2 1/0.000 + CDS 3741 - 5855 1454 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters + Prom 5967 - 6026 6.6 6 3 Op 3 4/0.000 + CDS 6079 - 6618 459 ## COG1396 Predicted transcriptional regulators 7 3 Op 4 30/0.000 + CDS 6632 - 7720 1113 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 8 3 Op 5 36/0.000 + CDS 7814 - 8638 749 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 9 3 Op 6 25/0.000 + CDS 8628 - 9461 776 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 10 3 Op 7 . + CDS 9445 - 10518 1091 ## COG0687 Spermidine/putrescine-binding periplasmic protein + Term 10537 - 10586 9.3 11 4 Op 1 . - CDS 10728 - 11300 340 ## LGG_00973 hypothetical protein 12 4 Op 2 . - CDS 11328 - 11693 331 ## LGG_00974 hypothetical protein - Prom 11719 - 11778 5.1 + Prom 11848 - 11907 5.1 13 5 Tu 1 . + CDS 12015 - 12206 259 ## LC705_01033 hypothetical protein + Term 12289 - 12331 -0.9 - Term 12330 - 12394 17.4 14 6 Op 1 1/0.000 - CDS 12399 - 15191 2351 ## COG0474 Cation transport ATPase 15 6 Op 2 3/0.000 - CDS 15267 - 15947 525 ## COG1309 Transcriptional regulator 16 6 Op 3 45/0.000 - CDS 15981 - 17120 883 ## COG0842 ABC-type multidrug transport system, permease component 17 6 Op 4 . - CDS 17110 - 17844 276 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 18054 - 18113 5.1 + Prom 18010 - 18069 5.4 18 7 Op 1 7/0.000 + CDS 18104 - 18961 975 ## COG1624 Uncharacterized conserved protein 19 7 Op 2 6/0.000 + CDS 18958 - 20055 826 ## COG4856 Uncharacterized protein conserved in bacteria 20 7 Op 3 5/0.000 + CDS 20084 - 21448 1461 ## COG1109 Phosphomannomutase + Term 21553 - 21604 15.8 + Prom 21589 - 21648 9.5 21 8 Tu 1 . + CDS 21877 - 23688 1880 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 23765 - 23816 12.4 - Term 23753 - 23804 16.2 22 9 Tu 1 . - CDS 23839 - 25644 1453 ## COG1164 Oligoendopeptidase F - Prom 25665 - 25724 6.7 + Prom 25441 - 25500 5.3 23 10 Op 1 . + CDS 25718 - 26209 417 ## LGG_00985 integral membrane protein 24 10 Op 2 . + CDS 26280 - 27011 898 ## COG0217 Uncharacterized conserved protein + Term 27062 - 27123 17.2 25 11 Op 1 24/0.000 + CDS 27388 - 28257 691 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 26 11 Op 2 . + CDS 28260 - 29207 567 ## COG1459 Type II secretory pathway, component PulF 27 11 Op 3 . + CDS 29210 - 29530 333 ## LGG_00989 type II secretory pathway/competence component/competence protein ComGC 28 11 Op 4 . + CDS 29527 - 29949 166 ## LC705_01048 type II secretory pathway/competence component/competence protein ComGC 29 11 Op 5 . + CDS 29919 - 30230 250 ## LGG_00991 hypothetical protein 30 11 Op 6 . + CDS 30190 - 30657 332 ## LGG_00992 type II secretory pathway/competence component/competence protein ComGC 31 11 Op 7 . + CDS 30654 - 30977 247 ## LGG_00993 hypothetical protein 32 12 Tu 1 . + CDS 31382 - 32395 937 ## COG0827 Adenine-specific DNA methylase + Term 32537 - 32572 5.1 + Prom 32585 - 32644 4.7 33 13 Tu 1 . + CDS 32664 - 33119 376 ## LC705_01053 hypothetical protein + Term 33186 - 33222 -0.4 + Prom 33130 - 33189 3.8 34 14 Op 1 . + CDS 33334 - 34698 1085 ## COG1113 Gamma-aminobutyrate permease and related permeases 35 14 Op 2 . + CDS 34730 - 35494 543 ## LC705_01055 1-acyl-sn-glycerol-3-phosphate acyltransferase 36 14 Op 3 . + CDS 35491 - 36330 437 ## LC705_01056 lipopolysaccharide biosynthesis glycosyltransferase 37 14 Op 4 . + CDS 36331 - 37287 885 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 38 14 Op 5 . + CDS 37284 - 38156 712 ## LC705_01058 phospho-beta-glycosidase + Term 38181 - 38220 3.1 + Prom 38165 - 38224 5.1 39 15 Tu 1 . + CDS 38380 - 40674 1435 ## COG3345 Alpha-galactosidase + Term 40741 - 40768 -0.8 + Prom 41601 - 41660 5.9 40 16 Op 1 . + CDS 41733 - 42128 318 ## LC705_01081 integral membrane protein 41 16 Op 2 40/0.000 + CDS 42145 - 42876 817 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 42 16 Op 3 . + CDS 42873 - 44414 1315 ## COG0642 Signal transduction histidine kinase + Prom 44427 - 44486 2.1 43 17 Tu 1 . + CDS 44564 - 45097 474 ## COG3153 Predicted acetyltransferase + Term 45118 - 45159 6.5 44 18 Tu 1 . - CDS 45171 - 45365 195 ## LGG_01006 hypothetical protein + Prom 45674 - 45733 4.7 45 19 Op 1 . + CDS 45799 - 46233 446 ## COG4492 ACT domain-containing protein 46 19 Op 2 . + CDS 46258 - 46761 412 ## LGG_01008 hypothetical protein + Term 46831 - 46881 5.0 47 20 Op 1 . - CDS 46952 - 47296 306 ## LGG_01009 acetyl-CoA carboxylase carboxyltransferase subunit 48 20 Op 2 . - CDS 47277 - 48584 980 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 48640 - 48699 3.2 - Term 48658 - 48703 5.0 49 21 Tu 1 . - CDS 48734 - 48913 188 ## LC705_01090 hypothetical protein - Prom 48948 - 49007 3.6 50 22 Op 1 . - CDS 49029 - 50213 742 ## COG4640 Predicted membrane protein 51 22 Op 2 . - CDS 50217 - 50999 576 ## COG2755 Lysophospholipase L1 and related esterases 52 22 Op 3 . - CDS 51050 - 51370 237 ## LC705_01093 membrane protein - Prom 51394 - 51453 2.7 + Prom 51564 - 51623 3.3 53 23 Op 1 5/0.000 + CDS 51665 - 53917 2260 ## COG0210 Superfamily I DNA and RNA helicases 54 23 Op 2 4/0.000 + CDS 53965 - 55989 1769 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 55 23 Op 3 1/0.000 + CDS 56002 - 57153 1090 ## COG4851 Protein involved in sex pheromone biosynthesis 56 23 Op 4 31/0.000 + CDS 57205 - 57501 338 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 57 23 Op 5 21/0.000 + CDS 57505 - 58959 399 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 58 23 Op 6 2/0.000 + CDS 58961 - 60391 1334 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) + Term 60451 - 60497 12.0 + Prom 60419 - 60478 1.8 59 24 Op 1 2/0.000 + CDS 60603 - 61637 949 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 60 24 Op 2 2/0.000 + CDS 61639 - 63000 1236 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Prom 63041 - 63100 4.6 61 24 Op 3 2/0.000 + CDS 63286 - 64485 858 ## COG0477 Permeases of the major facilitator superfamily 62 24 Op 4 . + CDS 64563 - 65378 748 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 65386 - 65434 2.1 - Term 65372 - 65420 5.1 63 25 Tu 1 . - CDS 65454 - 66329 685 ## COG2326 Uncharacterized conserved protein - Prom 66415 - 66474 3.2 + Prom 66178 - 66237 5.5 64 26 Tu 1 . + CDS 66452 - 68350 1396 ## COG3590 Predicted metalloendopeptidase + Term 68443 - 68485 2.0 - Term 68430 - 68472 9.0 65 27 Tu 1 . - CDS 68478 - 68933 427 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 66 28 Tu 1 . - CDS 69313 - 70185 692 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 70288 - 70347 2.5 - Term 70330 - 70367 3.0 67 29 Op 1 . - CDS 70377 - 71309 1020 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 68 29 Op 2 . - CDS 71351 - 71545 314 ## LC705_01109 hypothetical protein - Prom 71612 - 71671 5.9 Predicted protein(s) >gi|225002531|gb|ACIZ01000048.1| GENE 1 81 - 815 546 244 aa, chain + ## HITS:1 COG:lin2245 KEGG:ns NR:ns ## COG: lin2245 COG1668 # Protein_GI_number: 16801310 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Listeria innocua # 1 236 176 409 411 129 39.0 6e-30 MNHGVAVVSMVLILMVTMVYGSILAQEIATEKGSRIMEILLSSVSATTQFFGKLAGIFAL LLTQLAIYLVAGLIGWQFLKNQSMVAGVLKQFDFSILFSGTTGMIAIFFVIGTLTFSVLA ALTGSLVSNQEQVQQAAMPISMLGLVGYFITIAAQSGDSMLAQIASYVPFLNVFVMPTQM SLGRASMGEAWISIAISIAFLALFTMFTVKVYRNNVLVYSGSGLWQSMKTSFSIWKSERH VVKK >gi|225002531|gb|ACIZ01000048.1| GENE 2 1003 - 1545 527 180 aa, chain - ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 178 1 174 306 142 41.0 3e-34 MDFIAMDFETANRKRASACSLALVVVQQNRVVDSFYTLINPQMQFDPQNIRIHGITPDMV QDQPTFDRVWPHIQMFYTPGRIVTAHNAPFDVSVLRLTLDRYGIAAPRYQVIDTVKTSRQ FLPKLPNHRLDTVSAALKIPLEHHHNALADSYACARILIAENEHFGEAQTKAMMKLAKAG >gi|225002531|gb|ACIZ01000048.1| GENE 3 1557 - 2318 691 253 aa, chain - ## HITS:1 COG:FN0047 KEGG:ns NR:ns ## COG: FN0047 COG0708 # Protein_GI_number: 19703399 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Fusobacterium nucleatum # 2 247 1 247 253 346 66.0 2e-95 MLKMISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQVELDLPGYYQYFNYAER KGYSGTAIFTKHKPLNVTYGMGIPEHDTEGRIITLEYPKFYLMTVYTPNSGGELKRLDYR QQWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQLN SGFIDTFRHFYPDTVTYSWWSYRFHARANNAGWRIDYFVASSAFQPYIQDAKILTQIMGS DHCPVELVTQDLV >gi|225002531|gb|ACIZ01000048.1| GENE 4 2805 - 3704 832 299 aa, chain + ## HITS:1 COG:lin1459 KEGG:ns NR:ns ## COG: lin1459 COG0812 # Protein_GI_number: 16800527 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Listeria innocua # 16 296 16 296 298 332 57.0 6e-91 MVDAPRILEGITMLHDEPLSHYTFTKTGGPADLLAFPKDVAEVQALVEMARERDMPLTVI GNASNLIVRDGGIRGLVLILTAMKKITVNGNDVTAQAGAQLIDTTEAAYRAGLTGLEFAA GIPGSVGGALFMNAGAYNGEVCSVISQAHVLTRAGELKTYNHRELNFRYRHSVVQDTGDI VLSVTFSMKFGDKPTIRAKMDELNARRAAKQPLEYPSCGSVFKRPPDHFVGPMIQKAGLQ GHIIGGAQVSKKHAGFIINLGNATATDYLDMIHLIQKTVKAKFDVDLEPEVRIIGEPLH >gi|225002531|gb|ACIZ01000048.1| GENE 5 3741 - 5855 1454 704 aa, chain + ## HITS:1 COG:BS_yvgP KEGG:ns NR:ns ## COG: BS_yvgP COG0025 # Protein_GI_number: 16080395 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Bacillus subtilis # 1 695 1 664 670 384 34.0 1e-106 MHLVEAVLFLMALVIISNVLSHYIVAVPVSLIQVALGLGAALFFHLTINLATDWFMLLFI APLLFYDGRHFPRRELWELRGPIMGNAIFLVFATMLVGGYLIHFLIPPLPLPASFALAAI LSPTDPIAVQSLAKRVHLPSGVLHLVSGESLINDASGLIGFKYGIAATMTGAFALGHAVR DFFYVALVGALAGLVLIGLINLSRNWLLQQGLNDVILHTILQVLTPFFIYLIVDEFMHAS GVIAVVVAGLLSNTQHNRYVAALPELRIVSERTWDLIVYTLNGIIFLILGIELPVAMRDT IADHEVNTWQALEFVVIVYLGILVLRTLWIYGYMWLTVRSKGNPPSWRAALLSGISGVRG AITLVGVFAVPAALANGQPFPERSLMLFIAAGVVVLSLIVAIVALPLVTRSVAPLQTRGS TIAADGSSDVAEDDENSHDVRIISQRQAQLFVYQMAVRRVESERRESNQKAALDLIAEYQ NLIRRLELAEDTGAAIPPLVQDELDLRKVGVQGELYALDDLWRENKIMSKSYAKAHKQLQ HRLDDLNSMAKRSGRPTLRMLLDRSALKLSHFWYTVASEQNRSHRFFNEKLFIEKETAKG GLKYLSQFLRQKENKAHHYNRQVIYSLIVQYRNRIASVKALNTHKSTQYEHELGRLRAIA FAAERTAIHDLLEKGYITMAMAQRLNQNVNFTENAATLTSMEEV >gi|225002531|gb|ACIZ01000048.1| GENE 6 6079 - 6618 459 179 aa, chain + ## HITS:1 COG:lin0796 KEGG:ns NR:ns ## COG: lin0796 COG1396 # Protein_GI_number: 16799870 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 179 1 180 180 210 59.0 1e-54 MDIGSKIRDLRIRKNLTQEELGERTDLSKGYISQVEHDQSSPSLETFFDILSVLGESPAD FFREEPVDSLVYHASDQVTYLDEDKGYQLKWLVPESNENEMEPVMIDFAPDGIFKTFEPS PAETFVYVVSGKVKLLLGEQTYVAKKGETIYFHATKQHQLVNAATGRSKCLLVATASYL >gi|225002531|gb|ACIZ01000048.1| GENE 7 6632 - 7720 1113 362 aa, chain + ## HITS:1 COG:SP1389 KEGG:ns NR:ns ## COG: SP1389 COG3842 # Protein_GI_number: 15901243 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 1 356 1 358 385 495 68.0 1e-140 MSNIIVELKHVGKRYGDTQVLKDVNIEIEQGKFYTLLGPSGSGKTTILRAIAGFLDVSEG EVLFDGKRINDVPANQRKVNTVFQDYALFPHLNVFDNVAFGLRLHRMSKETIKTKVTDAL KMVRLQGYADREISELSGGQQQRVAIARAIVLEPQVLLLDEPLSALDAKLRKDMQYELRE LQERLGITFLFVTHDQEEALALSDEIFVMNDGQVQQSGTPVDIYDEPVNHFVADFIGESN IIQGHMIKDFLVEFNGKQFECADAGMRPNEPVEVVLRPEDLDITAADAGKVNVEVDTQLF RGDYYEIVAYDQLKNEWLIHSTNPAKDGETVGLTFDPEDIHVMRLNESEEEFDARLETYE GD >gi|225002531|gb|ACIZ01000048.1| GENE 8 7814 - 8638 749 274 aa, chain + ## HITS:1 COG:SPy1103 KEGG:ns NR:ns ## COG: SPy1103 COG1176 # Protein_GI_number: 15675086 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Streptococcus pyogenes M1 GAS # 1 266 1 264 264 333 68.0 3e-91 MKKSTTNVAFYTPYVMWLALFVIAPMVLIVYQSFFDISGHFTLANYQTYFQSGTYIMMTI NSVWYAFLITLATLLISYPTAYFLHYAKHKQLWLLLIILPTWINLLLKAYAFIGIFSQDG GVNSFLGMFGIAPQQFLFTDFSFIFVAAYIEIPFMILPIFNAIEELPENLVNASRDLGAK GWQTFTKVVWPLTISGVKSGVQAVFIPSLSLFMLTRLIGGNRVITLGTAIEEHFLTTMNW GMGSTIGVVLIVAMFVIMFLTGERKKKGVRRHEA >gi|225002531|gb|ACIZ01000048.1| GENE 9 8628 - 9461 776 277 aa, chain + ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 3 263 2 262 268 321 67.0 1e-87 MKRKFKWSNLYLIFVFICLYVPIFYLVIYSFSTGDRMSNYSGFTWKHYAELFADTRMIQI VLDTLLVALLSSLIATIIGALGALAIDRTSRPVVKNTVLSLNNILMVSPDVIIGASFLIF YTALKVPLGFWSVLMSHIAFSIPIVVLMILPRLQEMSHSMLDAARDLGASNYQVLTRVIV PYITPGIFSGFFMAFTYSLDDFAVTFFVTGNGFETLAVEIYARARQGISLEINALSGVMF VFALLLVVGYYFIQQAGQSRRAKHKRESEALLNETTH >gi|225002531|gb|ACIZ01000048.1| GENE 10 9445 - 10518 1091 357 aa, chain + ## HITS:1 COG:SPy1105 KEGG:ns NR:ns ## COG: SPy1105 COG0687 # Protein_GI_number: 15675088 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Streptococcus pyogenes M1 GAS # 1 357 1 357 357 414 56.0 1e-115 MKRLISIAVAILAVCLGLAVWSENLQKSQGDTGDNTLNLFNWGDYIDPALISKFEKQTGY HVNQETFDSNEAMFTKIQQGGTSYDLTVPSDYMIEKMKKANLLLPLDKSKLRGMQHMDPR LINKEFDPNNKYSIPYFWGTLGIIYNDKFVNASEVQHWNQLWNPKFKDSIMLIDSARDVF APALISLGKSVNETNPQTLAVAKAKLDQLSPNVKAVVADEIKMYMAENEAKIAVDWSGEA SEMLANNKHLHYVVPQEGSNLWFDNLVIPKTAKHFKAIYAFLNFMMEPKNAAQNAEYVGY ATPNATAKKLLPKSVQNDRQFYPDDETMKHLEIYSDLPPAKVGLYNDLFLEFKMYRR >gi|225002531|gb|ACIZ01000048.1| GENE 11 10728 - 11300 340 190 aa, chain - ## HITS:1 COG:no KEGG:LGG_00973 NR:ns ## KEGG: LGG_00973 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 190 1 190 190 290 99.0 2e-77 MKKLILVTVATLSIFFLAGCSSSSSASKDNSSAAKTSTAEKAEKAENKTSTPKSGWSFKN DTWVTANMTFKFTKAEVQDAYEQGKKNLVLFVDVTNTSKKEQMPMAGMVSMNVKQKNDTS NVDLTSGMPKMNDDGSNPFEAQENAMHNNLLPGKTVQGVFIYELKNDNPVTVTFENASFQ TIGTKTYNVK >gi|225002531|gb|ACIZ01000048.1| GENE 12 11328 - 11693 331 121 aa, chain - ## HITS:1 COG:no KEGG:LGG_00974 NR:ns ## KEGG: LGG_00974 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 121 1 121 121 192 100.0 3e-48 MGKIKINIWTAIYDIVACFIFASSWFVIFATAVNDAANKTNVTSGAGIFFYTVAWIGVVL NAVALWQSYKHHISLVGGILGVIGSLCFGISAVFAFPAIVLLIIAIVFLFLQHPRKQNKV A >gi|225002531|gb|ACIZ01000048.1| GENE 13 12015 - 12206 259 63 aa, chain + ## HITS:1 COG:no KEGG:LC705_01033 NR:ns ## KEGG: LC705_01033 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 63 1 63 63 108 100.0 8e-23 MKKHSRHSEGVWLDIVCCISLWLAVGSLVAAATVIHINRPYIIIMLALAFCAIGETVAVF KNW >gi|225002531|gb|ACIZ01000048.1| GENE 14 12399 - 15191 2351 930 aa, chain - ## HITS:1 COG:MTH1516 KEGG:ns NR:ns ## COG: MTH1516 COG0474 # Protein_GI_number: 15679513 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanothermobacter thermautotrophicus # 16 919 13 908 910 702 42.0 0 MKNEKETRRKFATESIADLMTDLHTTSTGLSQQEASTRLAKYGENTITREKQASQLLIFL KNFTSVMAILLWVSGFVAILSGTLELGIAIWLVNIINGVFSYWQEHEAQKATNSLMKMLP TYTQVYRDGKLQQVNATQIVPGDVFNLQAGNAVPVDARLIKATSVQVDQSALTGESVPES KKVAFDAGQGEFAESNLVYAGTTVGAGTATAVAFATGMHTEFGRIAALTQQQKRSLSPLQ LELNRLTKQISLIAISLGVLFFVAAIFFVHYPVAQSFIFALGMIVAFIPEGLLPTVTLSL AQGVQRMARKHALLKDLNSVETLGETTVICSDKTGTLTQNQMTVDHVWTPAHTYTVTGQG YVNNGEIQLNGQPIHYGSDPDLDLLIRLVAFNNDTEVEPAKGEARPKILGTPTEASLVIL AQKSGIDTNAYTQKFPRLKELPFDSDRKRMTTIHQHDPQTLSICTKGSLSDLLPHCDTIQ ENGKVRPLKQADKDAIDAANRKYAALGLRSIATAYREIPQAADKEKQLDGLTIETAETKL TFVGLAIMSDPPRPEIYAAIKKCHNASIKIIMVTGDSSLTAKSIAVKIGLTSDKARVVTG TELDAMSKADLKQALAGEIIFARVAPEQKYKIVSTLQEMGEIVASTGDGVNDAPALKKAD IGVAMGVTGTDVAKDAADMILTDDNFASIVAAIEEGRTVYSNIQKFLIYILNSNLPEAVP SALFLFSRGAIPLPLTVMQILTVDLGTDMMPALGLGSEKAEPGIMDKPPRARNAHLMSRT VLWKAFAWYGLIASIISSGAYFFVNHLDGWPTHGLATSGSTYVMATTMTLAAIIFCQIAA AMNCRTENASVFKVGLFANRLVWFGIIFEIFLLALLSYTPFLQELFHTGPLALTDWIFLA IIPIPLFLIEEGRKWLNRRRLAHAKVKRVE >gi|225002531|gb|ACIZ01000048.1| GENE 15 15267 - 15947 525 226 aa, chain - ## HITS:1 COG:lin0926 KEGG:ns NR:ns ## COG: lin0926 COG1309 # Protein_GI_number: 16799997 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 16 212 18 216 218 108 29.0 1e-23 MKPHNITDLFSASLADSQLSTKQQAVLKASLKLFSEQGYDRTSTQEIARVAQVSEGTVYK QFKTKEGILRALLAPMIQQVIPSAITEFIHEVGEHHLPDLHTFLTFIVRDRMTFAITNQA QLRILIATLLRDSSLSKALAKQFQTQFLGEATHLLTAYQEKGVLVNWPVIRILQYIFGTV FSYLLPVILDIQSQFDLNAAVNEAVTFLERGLQGEVAYPAPPTHEN >gi|225002531|gb|ACIZ01000048.1| GENE 16 15981 - 17120 883 379 aa, chain - ## HITS:1 COG:lin0925 KEGG:ns NR:ns ## COG: lin0925 COG0842 # Protein_GI_number: 16799996 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 1 379 1 371 371 234 41.0 1e-61 MRIEALMIRIFKEMLRDKRTLALMFIAPLFIMTLIFFLFQSNTTTKVDLAVHGVQTSLTK AMDTKHLRLHHVGTEKPTRIIKQHDYAGVLTQHGNQLTLTLANTDQGQSTLLKQTLQAAT VKLRLKAAATSLKTQAIALNKLTDALQQATHGAVQVPIPQQPKQTNYRMTTHYRYGSSES TYFDTLLPILIGFIVFFFVFFISGIALLRERTTGTLYRLLATPIRRGEIISGYLLGYGIF AVIQTVLIVGYALVVFKIQILGSIPAIFLINLLLASTALALGLLISTFANSEFQMLQFIP IIVIPQIFFTGLIPVNQMLGWLQPIAHLMPLYYGANALTGIITKGQSLAVLYPDVIALVG FFLLFLDLNLLTMRKYRQV >gi|225002531|gb|ACIZ01000048.1| GENE 17 17110 - 17844 276 244 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 5 224 3 226 305 110 34 2e-23 MSTQAIVQVSDLQQGYGTKTVLSHINLTLNRGQILALIGPSGAGKTTLISTIMGMIRPRA GKVTVFNQHVPNRLLLGRIGFMAQTDALYESLTGAENLTFFAKMQGVGRYLLTKQLMYAA DVVDLQTALKQLVKDYSGGMKRRLSLAIALIGKPQLLILDEPTIGIDPALRRQIWQELHR LAKQGVTIILTTHVMADAEEADLLMMIRNGQAIAQGTPKQLQVDYQANSIEAVFLAAGRQ QDAH >gi|225002531|gb|ACIZ01000048.1| GENE 18 18104 - 18961 975 285 aa, chain + ## HITS:1 COG:lin2225 KEGG:ns NR:ns ## COG: lin2225 COG1624 # Protein_GI_number: 16801290 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 256 3 254 273 300 58.0 2e-81 MRTYLANLLTWSTLINLVDILVVWYVIYRLIMLVRGTKAVQLLKGVFVIAAIKIISWFLQ LKTVGYLTDLVITWSVPALVIIFQPEIRRGLEHLGRGSLIFRSNNNQHEAEARMVKELDK AIQYMSKRRIGALITIQKNTGLEDYIETGIPLDADISGELLINIFIPNTPLHDGAVIIRD NRIAVAAAYLPLSDSNLIPKELGTRHRAAVGISEVTDALTIVVSEETGEVTITNNNNLIR NLTREDYMKFLTAQLVPKEEAPDPNPVVSFFSRLFSQRKKKEGKQ >gi|225002531|gb|ACIZ01000048.1| GENE 19 18958 - 20055 826 365 aa, chain + ## HITS:1 COG:lin2224 KEGG:ns NR:ns ## COG: lin2224 COG4856 # Protein_GI_number: 16801289 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 54 364 50 357 452 129 29.0 7e-30 MNRLWDKPWVNRLLALLLAIGLFAYVNVESINNTRQSANDDTTLVANKTQTVKVPLQVNA NTDKYFITGYPSKVSVALTGTASLVTMTANTQNFRVIADLTNLGVGKHRVRLKAEGLNKD LSYSISPKSVKVDIQVRDNKTMPIQVRYNKASIASGYAAGEPKLSTRTVEVTGARSVIDS IAQVVANVSLAHNTRKSVDQEVLLQALDDNGNTMNVVLSPQTVHVTLPISQPSKKINVEL KQTGNAVSGHTYALSSDTKQVTVYGDQQSLDKLSKLTVPVDVSDITSSTTRTFNVTDLND GISAASPETIKVTVSVGNTGSGDDDNSGNNSSGAESSATSSKTASTSASASQSSSSSEST STSED >gi|225002531|gb|ACIZ01000048.1| GENE 20 20084 - 21448 1461 454 aa, chain + ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 1 450 1 446 448 587 66.0 1e-167 MTKYFGTDGVRGIANKELSPEMAFRLGRTGGYVLTQHKEDASRRPLVLVARDTRISGQML ADALIAGLLSVGIEVLDLGVITTPAVAYLIKIQGADAGIQISASHNPVADNGIKFFGADG YKLSDETEEEIEALLDAPEDKLPRPAAEGLGTVDDYPEGALKYTQFLEQTLADDLSGIHV CLDGANGATSGLVSRIFADLETDFDTMATTPDGLNINADVGSTHPQALAKFVVEKGADVG LAFDGDGDRCIAVDEEGNIVDGDKIMFILGNYMKSQGRLKQDTVVTTVMSNLGLYKALEA NGMKSVQTAVGDRHVVEAMRKDGYNIGGEQSGHIILFDYHNTGDGMLTGIHLLNVMKKTG KKLSELAAPVKDYPQKLVNVKVADKENWQAYPEIQAAIDTVEKEMAGDGRVLVRPSGTEP LLRVMAEAKTEDLVSRYVDQIVDVVKQEMGSSEA >gi|225002531|gb|ACIZ01000048.1| GENE 21 21877 - 23688 1880 603 aa, chain + ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 603 1 602 602 687 58.0 0 MCGIVGVIGKKNATQILLKGLEKLEYRGYDSAGIYVNDQAGHDHLIKRVGHISNLEEAVT PDVQGVMGIGHTRWATNGGPTEANAHPQVSNDERFYLVHNGVVTNANDLKQQYLQDIELH SDTDTEVVVQLIALFAREGLSAKEAFRKTLKMIQGSYAFSMVDRLDPTVLYIAKNKSPLL IGRGEGFNVVASDALAMLSETDQFVELKDQEIVTLTADAVHIETLDGKVEDRKPFTVKVD DGEVSKGTYPFFMLKEIDEQPIVMRRLVEKYTDNQQHVVIPENLMKALQNADRLYIVAAG TSYHAGLVGAPLFEQLAGIPTEVHVASEFAYHQPLLSKHPLFIFLTQSGETADIRQVLVE VKAQGYQTLTITNVGSSTLAREATFTLLLHGGPEIAVASTKAYTAQIAVEALVAKAVGEA KGLQNAKDFDVIHQLGLAATGQQALIDQKDRIHELATDMFKTTRNAFYIGRGGDYYASLE AALKLKEISYVQAEGFAAGELKHGTIALIEKDTPVVAIISDPVTAARTRSNADEVQARGA KVLHIAMASQAQKGDQIIVDEIDPLLAPLVTIIPAQLLAYFTSSDRGYDVDRPRNLAKSV TVE >gi|225002531|gb|ACIZ01000048.1| GENE 22 23839 - 25644 1453 601 aa, chain - ## HITS:1 COG:lin1528 KEGG:ns NR:ns ## COG: lin1528 COG1164 # Protein_GI_number: 16800596 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 3 601 5 602 602 530 46.0 1e-150 MSYPINWNLDSIFPGGIDSPQLTARIQTVTDELPQLEAQVAAWSPEDDAPEFTDFKTLWQ LFEDISKGLGTTGSFVEMIASADTANLKTGPLLGQLTTLETRFQNINNPLAKKLAAMPQT AFDQLTATGTLAESRFGLSEIRDQAKELLDDKTETMINDLAVDGFTGWSNHYTTLSGSLK FPITQNGETTELSAGQTQNKFEGAPDPKTRKDVFNVWEQVWSDHASLFGETLNHIAGFRL TNYRLHQYPDYLYKPLQYNRMKRATLDQMWQTISANKAPFAAYLTRKAQLTGQSTMQWQD QWAPVVVGDFKPKTYTFDEAAEFIVNNFAKFSPKMAAFAQHAFENGWIEAEDRPGKRAGG YMTSVPDVKESRIFMTFDGSASGVSTIAHELGHAFHSSILKDMPVLRQNYAMNVAETAST FAELIVADATVKAASEPAEKLNLLDAKMANPLAMLLNIHARFLFEDSFYQEREHGIVSVP RLKALMTAAQEKAYAGGLSSFDPMYWADKLHFYFDNPPFYNFPYTFGYLFSSGIYAKAQQ SDHFEDDYIALLRDTANMSTEALAKKHLGVDLTQPEFWQQGIDLAAKDAQQFMALSEAYL K >gi|225002531|gb|ACIZ01000048.1| GENE 23 25718 - 26209 417 163 aa, chain + ## HITS:1 COG:no KEGG:LGG_00985 NR:ns ## KEGG: LGG_00985 # Name: not_defined # Def: integral membrane protein # Organism: L.rhamnosus # Pathway: not_defined # 1 163 1 163 163 306 100.0 2e-82 MNSFKRHWGLWLTAAILFVLFVSSSMTYKEQTTVPLMERLLHNEPFKPFLSSIQFNYAGE TQSVAKVGYFKFVEFFVRKGAHVSIFFLLGLGLTQGTFMYQKNRWLHWPLMVLSCTGIAA FDEFHQMLTGGRTPLFQDVMLDTVAAAIAVTFMWGWLWRQKRR >gi|225002531|gb|ACIZ01000048.1| GENE 24 26280 - 27011 898 243 aa, chain + ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 239 1 239 241 286 61.0 3e-77 MSGHSKWHNIQGRKNAQDAKRGKIFQKLSRELYMAAKQGGPDPSGNPSLRLVMDKAKAAN MPKDNIKRALDKASDRDAANYDEVTYEGYGPGGVAILVEALTDNRNRTSSSVRVAITRHG GNMAAAGAVSYMFDRKGYLVISREAYDVDEDQMLEDALEAGAEDMQTSDDAYEIYTDPKE FAQVRDALEEKGYKFVQNELTMVPQNLTPIPKDKVEQFQAMIDQLEDDDDVQEVYTAGDW PDD >gi|225002531|gb|ACIZ01000048.1| GENE 25 27388 - 28257 691 289 aa, chain + ## HITS:1 COG:L0313 KEGG:ns NR:ns ## COG: L0313 COG2804 # Protein_GI_number: 15674105 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Lactococcus lactis # 5 255 7 258 312 181 40.0 2e-45 MQSVKTLLTNALDKGASDIYYLPNPHGYLIRLRLPTGLVTLGQLETRIGQQEINYLKFMA GMNVAEHRRVQLGAFYHPDSDVFLRLSSVADFRGRESLVVRLISGIPDAQGARQLLDRLM SILTQRRGMLTLAGPTGSGKTTLLYQLATRLAASKMVLSIEDPVEINQPQFLQLQVNPEA EMSYPQLLKAALRHRPDVLLIGEIRDRQTAQSACEAAISGHIVLATVHARSANDTPLRLT SFGLPAELVSAALTASAAITLQYRPTIHPVAEVVVFEPAHQSGATEVVS >gi|225002531|gb|ACIZ01000048.1| GENE 26 28260 - 29207 567 315 aa, chain + ## HITS:1 COG:lin1383 KEGG:ns NR:ns ## COG: lin1383 COG1459 # Protein_GI_number: 16800451 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Listeria innocua # 9 313 15 340 343 87 23.0 4e-17 MPLIVQERFCRQSAALMKAGFNLSDVFAYLQVSLPKHTAIWQGIENELANGIAFSDAVAR QDLAPILFQQLQLAQVHGDLAKALTIAADYLHLRVRNRQRIVQLLVYPCLLLAMLVVLQI VVVFGVLPALSLPQSNLVALQLIGLGVVTVIGFLGYCYWHRLSPLKRLLVLQNVPGMRQL LRTYYQFQFTAGAAQFLLAGADIANFCQHLATLDGPMGKLGIRIQAKVQQGYELSVALQE PLIPAEVARLLTMGQSHHLVATGLKLFGEQLFSRLQQQLERLVSLVQPFLFLIIGGEILL VYLQILLPLYQSIGG >gi|225002531|gb|ACIZ01000048.1| GENE 27 29210 - 29530 333 106 aa, chain + ## HITS:1 COG:no KEGG:LGG_00989 NR:ns ## KEGG: LGG_00989 # Name: gomGC # Def: type II secretory pathway/competence component/competence protein ComGC # Organism: L.rhamnosus # Pathway: not_defined # 1 106 1 106 106 184 99.0 7e-46 MKRKKLRAFTLIEVVAALGVIILLTLALVLTIQGQMKRVDTQNLKATVATVNTQLEMTYN EPDHGGVDFSSPDQLVKKDVISQSQADTLKKGGFKLTAGSPPTFSK >gi|225002531|gb|ACIZ01000048.1| GENE 28 29527 - 29949 166 140 aa, chain + ## HITS:1 COG:no KEGG:LC705_01048 NR:ns ## KEGG: LC705_01048 # Name: not_defined # Def: type II secretory pathway/competence component/competence protein ComGC # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 140 1 140 140 274 100.0 7e-73 MKRLHGFTLIEVVAVMFVITALAIVAVPVGRNVLTQYREREFMEALVEEWEMLKMRARAE PSSGNMYVNGEKREVRFVTQGKTKILAFPESLAFGGESRMECNPNGKIVTAGSLYFRHFK DITWKISFQLGWGRAILTKN >gi|225002531|gb|ACIZ01000048.1| GENE 29 29919 - 30230 250 103 aa, chain + ## HITS:1 COG:no KEGG:LGG_00991 NR:ns ## KEGG: LGG_00991 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 103 9 111 111 180 99.0 1e-44 MGASNIDQKLSGVLLVEHLAALGVVLMAVGWLALLMRTYQQVVIPVRQETTAYYAARVAL MRVPARGGETQVSVGPDVWKVVVSAKEVRVDANNSTASYTFNP >gi|225002531|gb|ACIZ01000048.1| GENE 30 30190 - 30657 332 155 aa, chain + ## HITS:1 COG:no KEGG:LGG_00992 NR:ns ## KEGG: LGG_00992 # Name: not_defined # Def: type II secretory pathway/competence component/competence protein ComGC # Organism: L.rhamnosus # Pathway: not_defined # 1 155 1 155 155 303 100.0 9e-82 MPITRRPAIPLTLSAFTLIEVVIGLGIIVAVMLLWSPLLTGVQRFTNQDQYLLHALQADA DLQANVRTHRMKLESLKQKRVRLQGKDGHQSKFYVFEFYTKNGNSMIRARTNDGGHIPLF MQIKSGQFLGSVHGFLYEIRLGTNQTFEGGVRLNQ >gi|225002531|gb|ACIZ01000048.1| GENE 31 30654 - 30977 247 107 aa, chain + ## HITS:1 COG:no KEGG:LGG_00993 NR:ns ## KEGG: LGG_00993 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 107 1 107 107 182 100.0 4e-45 MKLRGSVLVNTIILFGIFLTMTIGMFKQFNRWQQHYQIIKQVEKSQFKSAYSQWRQNAEG VNHHDKSETADSASLKSSQASEVSVSPTRSMPVVEKTVSETDTKSVP >gi|225002531|gb|ACIZ01000048.1| GENE 32 31382 - 32395 937 337 aa, chain + ## HITS:1 COG:lin1617 KEGG:ns NR:ns ## COG: lin1617 COG0827 # Protein_GI_number: 16800685 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Listeria innocua # 1 330 1 327 332 234 40.0 1e-61 MANEHLEKLYHVLDESTTILHQQLKSTDIAAITEAGEDLSSGEVMQEDGLPNDEAKKKLE ALFGQVKLATYEPEEIRQALQLVLVKAIKVDGIEPNKQITPDAMASLATFMATVFDQQQP NQLKVADLAVGSGNLLFAVMNQLHKARNVTVKGYGVDNDEALLAVAGMSSSLQHLDVELF HQDALDGLLFKDIDVVVSDLPVGYYPVDERAKKFATAAKKGHSYAHHLLIEQSMKVLKPG GLGMFYVPSRVFQSEEAAGLTAWLAEKTYFQGLLNLPDDFFADKQAEKSLLILQKPSQDV KRAKQVLLGQFPNLNDREAFAAFIAKVKDWAAANIAQ >gi|225002531|gb|ACIZ01000048.1| GENE 33 32664 - 33119 376 151 aa, chain + ## HITS:1 COG:no KEGG:LC705_01053 NR:ns ## KEGG: LC705_01053 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 151 1 151 151 270 100.0 1e-71 MSLLSIAYVLIAIVAVGVTIFDIVQVRIRARPKAWRILLYLAVAAFSLVLTLQQSRSFDD LISGGFIVVMFLCFASWQKGLADPAIIGGLGSIRMYQNLTGVVLQAQPKGTVLLAQAGNL TVLKLQFRQDPPTINAFLADKMPPDRISIDD >gi|225002531|gb|ACIZ01000048.1| GENE 34 33334 - 34698 1085 454 aa, chain + ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 1 451 5 456 458 478 54.0 1e-134 MQAEKDDRPELARHLKSRHVQLIAIGGTIGTGLFLGSGQSIHSAGPSILFAYLITGGICF LLMRALGELLMSDVDSHTFIDFITKYLGKDAGWVTGWTYWICWVALAMAEVTAIGLYIRF WLPDVPQWLPGLIALAILLLLNLVSVGLFGEAEFWFALIKIVAIIGLIVLGIFMVIVRFK TPLGHASLDNLVNDGGFFPKGVGGFLMSLQMVVFSFVGIEMVGLTASETKNPHKVIPEAI NEIPMRILLFYVGALFVIMCIYPWRHVSPVNSPFVEVFNNVGIPFAADIINFVVLTAAAS ACNSSIFSTGRLLFSLTLNGKSQSAQWTAKLSRRQVPARAILVSTGVIAVAVVLNLFLPG SVFTLVSSMATISFLFVWGMIMLAHLRYKKLHPHSTDFRMPLYPFADYLVLGFLLLTAVI MMFDRAMLSALIFAIVWIATLFILRRLRRAEKAA >gi|225002531|gb|ACIZ01000048.1| GENE 35 34730 - 35494 543 254 aa, chain + ## HITS:1 COG:no KEGG:LC705_01055 NR:ns ## KEGG: LC705_01055 # Name: arbV # Def: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 254 1 254 254 493 100.0 1e-138 MVKVVTYQRLTDDIVTAPNQKDRLPANYCWKPTLGFRFKADLVYAGAWLFAQGYCRIGVQ VRHRSVLRQAAGRGYFVYGNHTQPFGDVFTPMRVNQARRVATLAAPANLSVPILGRLVPY GGGLLVPKQLHQLRAFNTEIKRLIAAKQVVMIYPEAHVWPYYTGIRPFESGAFHYPAELN APVFVTTMTYQRRHWWPRPKRILYVDGPYWPDQQLPLKMRQKQLATTVRTVMKKRAKLSN VAYIHYQQQKEAQP >gi|225002531|gb|ACIZ01000048.1| GENE 36 35491 - 36330 437 279 aa, chain + ## HITS:1 COG:no KEGG:LC705_01056 NR:ns ## KEGG: LC705_01056 # Name: arbX # Def: lipopolysaccharide biosynthesis glycosyltransferase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 279 1 279 279 566 100.0 1e-160 MTMNILFCGDANMTDGVLLATLSLMRQTREPLHIFVLTATLTVNDHRYKPFPVATAAQMT KLMQKENPVHQFTRIDITNLFEANPPRANLTTMFTPYCMLRLYADLVPQLPDRMLYLDTD VICRRPFAAFYHESMTGVDIAGALDHYGKWWFHHRLMWFDYLNSGVLLMNLARIRADGLL ARCRQLLQQRWLFMPDQSALNKLAKCKRILPPKYNEQHKLEPDTVFQHFTTSFRFWPRFR IVTVKPWQIHAVHQQLGLHEYDDLLKDYRRLAPKLKEVS >gi|225002531|gb|ACIZ01000048.1| GENE 37 36331 - 37287 885 318 aa, chain + ## HITS:1 COG:HI0258 KEGG:ns NR:ns ## COG: HI0258 COG1442 # Protein_GI_number: 16272216 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Haemophilus influenzae # 6 221 38 245 330 80 26.0 4e-15 MPTPTTVPIFFSVDDGYVPCLAVALTSIRANKNPRVNFEINILNNGLLPANQKRLAALGT SNFDIRFIAMDKVTRQISGDTNKLRGDYVTMTIYFRLFIADMFPQYDKAIYIDADTVAED DLTTLFATDLGDNLVAGVADPVMMTYPETMTYIQRDFGIQPGKYINSGVLVMNLAQMRQE HFSDRFLHLLKTYHFTMIAADQDYINVIAQHRIKYLPKLWNMQTGVPAAAEAGGKLIHYN LFGKPWHYHHAKLGDRFWRYAPDSGFEAELKQQLAAFTLADQQADRQSMSGMLQTAIDVC HTENTILNAVKHGEQVAL >gi|225002531|gb|ACIZ01000048.1| GENE 38 37284 - 38156 712 290 aa, chain + ## HITS:1 COG:no KEGG:LC705_01058 NR:ns ## KEGG: LC705_01058 # Name: arbZ # Def: phospho-beta-glycosidase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 290 1 290 290 599 100.0 1e-170 MKSGRFVGPDRAEVVGNIRRAVAAKAFNIKVEEHDPVFSKSEEQRIVTHYLQQRQDKLFK LKTLVCRLVVNAYALQVTKDVEVVGVDKIRGIKSGGVITSNHFSPFENMAVRKAVHLAGR HRMYIVSQDTNLAMKGLLGFVMNYDDTIPLSGRPSFLNGPFKQMLNAAFAGHHWVLIYPE QEMWFNYRKPRPPKRGAYFYAAEAGVPIISCFTEIRDLPVRENQQLREVRYILHVLDPIY PDPQLSARDNSFYMMQRDYAQKCQAYAAAYGKPLSYAFTQQDIAGWDPER >gi|225002531|gb|ACIZ01000048.1| GENE 39 38380 - 40674 1435 764 aa, chain + ## HITS:1 COG:BH2223 KEGG:ns NR:ns ## COG: BH2223 COG3345 # Protein_GI_number: 15614786 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Bacillus halodurans # 10 747 12 747 748 592 40.0 1e-169 MIDVTDDHAFHLYNQKISYICALLPNGQLGHLYFGPRLSLTTADLTYLSQGSSPFAWMAN FSDDQPFALGDAQQEYPVYGTGDFRQGSLSVTQADAPVYPNFVFKDYQVSHTKMRDLHHP TSFGNPALTDILTIHLEDETAQLLLTLQYTIFSDSATVVRVATLTNQGAEPVMIERMLSG ALNLPQGRYDVVHLSGNWAKERHIQTQPLTQGTFSVESLRGASSHEQNPFVALHAAGQPF AVGDAYGANLVYSGNFLDSIEVNEWDQTRLLAGIHPASFSWRLDPKTSFTTPEVVLSFSS AGLAGLSQVNQRFVARHIIDPQWRQKPRPVVLNSWEATYFDLNEQKLLHLAKLGRQVGVD CFVLDDGWFGTRDNDLSSLGDWFTNKHKFPDGLGHFAEEIHGLGLQFGLWFEPEMVSPRS QFFKEHPDWVVRPKRGRMSITRHQYVLDFSNPAVVNNIFAQMQRVITETKLDYVKWDLNR SITEAYSPYLAKIGHPQGEFFHRYVQGVYTLYQKLLTAFPHLLIEGCAGGGGRFDLGILF YSPQIWTSDDSDAIERLAIQSGTALAYPLSCMSNHVTAIPNEQVGRSTPLATRFRVAAFG ILGYELDLTKLDDAALAAIKNQIAYYHELQPLVLNGDFRLLLPRQSNSQNQVAWLLSDHS RKRLVLGFFRVLADADSRAVQYMKIPVAQPNQRYWVNGHTGPVSGDVLQRVGVRLPIQFN GANRQQAQLIGDYQSALLTFDGVTATKTGKHQPETRKQQKVGHA >gi|225002531|gb|ACIZ01000048.1| GENE 40 41733 - 42128 318 131 aa, chain + ## HITS:1 COG:no KEGG:LC705_01081 NR:ns ## KEGG: LC705_01081 # Name: not_defined # Def: integral membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 131 1 131 131 252 100.0 3e-66 MILLVAGCMQLLMGILLAIFRPRHQTGLWGYTSYLASVNADSFRLAQRWFYQALIATGAV EGLAGWAIHRLAWDNYFIIWLFLAVLLFLPGFVYTESRLKHYLEAHDALPYDYVAPDDAP RPKRRKGFKDL >gi|225002531|gb|ACIZ01000048.1| GENE 41 42145 - 42876 817 243 aa, chain + ## HITS:1 COG:BS_yclJ KEGG:ns NR:ns ## COG: BS_yclJ COG0745 # Protein_GI_number: 16077443 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 238 1 226 227 254 56.0 9e-68 MKLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMD GMQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRR AEVGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSK SPKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKVGPQIIQTVWGVGYKFDDSG LDQ >gi|225002531|gb|ACIZ01000048.1| GENE 42 42873 - 44414 1315 513 aa, chain + ## HITS:1 COG:BS_yclK KEGG:ns NR:ns ## COG: BS_yclK COG0642 # Protein_GI_number: 16077444 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 472 4 467 473 316 36.0 7e-86 MKMLYQQLIGFFSVIMVTLVIVSILFIRSTTNTVWENGFKQLEQYTDVLKNNAVDENTYV INARFIQNAEEILSDQHVHFVIYDANNVAKYPVSQKGRMTAIKASYWKKLKQGSAVAVPE MMTNPISGSAQSMTIYYQPVFLSEKLLFVIAAFAPVEQIQSSINKTEHNLLIAFVLSTLA AFIISYFIASYQVRRINQLRQATHQVAEGNYDVTVKMKSRSHDEVAELADDFRDMVNSLK ASQQEIQRQEDRRRQFMADAAHEMRTPLTTINGLLEGLAYDAIPEESKGKSIELMRNETN RLIRLVNENLDYEKIRTNQILLSKHTFNARKDLDNITEQLTQKAEEAGDTITIKAPAQLP TYADHDRFVQILFNIVQNAVQFTKNGQITIGGKLGYHQTEFTVSDTGIGMSKDQMKNIWE RYYKADPSRKNTKYGESGLGMAIVHQLMGLHGGTIEVDSKLGSGTTFTLIFPDEATAPKQ KQPGTKSSSSTTSSTAGASKETDAASNDHPKSE >gi|225002531|gb|ACIZ01000048.1| GENE 43 44564 - 45097 474 177 aa, chain + ## HITS:1 COG:L1005 KEGG:ns NR:ns ## COG: L1005 COG3153 # Protein_GI_number: 15672038 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Lactococcus lactis # 1 171 1 172 173 122 36.0 5e-28 MTIRRIQQSDFADVDALLHTAFSASKRGYHDEAALVAELRRTTDYEAALEVVAMIDGHLV GYGLMTAATITPDAHMNGVALWPLAVAPAYQGSGLGTAIVSELDMRATDLRRDFVSAIGD RQFFGRFGFRKAAAYKLEPPFSIVAEDHLIKELVPGVLASVHGKVNYARPFLAKMPN >gi|225002531|gb|ACIZ01000048.1| GENE 44 45171 - 45365 195 64 aa, chain - ## HITS:1 COG:no KEGG:LGG_01006 NR:ns ## KEGG: LGG_01006 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 64 1 64 64 121 100.0 6e-27 MKARQPYHLSWQLLTAVIIIGFVIFVEYWPHVTDNTLMGGALVSGGLCIGTLHKAHQSAH HKEK >gi|225002531|gb|ACIZ01000048.1| GENE 45 45799 - 46233 446 144 aa, chain + ## HITS:1 COG:CAC1234 KEGG:ns NR:ns ## COG: CAC1234 COG4492 # Protein_GI_number: 15894517 # Func_class: R General function prediction only # Function: ACT domain-containing protein # Organism: Clostridium acetobutylicum # 2 144 13 155 155 127 46.0 7e-30 MKQFYIVDSSILPDVVGKVIAARTLLQNGEVKQVSEAVKQVGISRGTYYKYKDYVFLPDH EMASRKAVISLMLHHDRGILSEVLTVISHAQASIVTINQNIPIHNWASVVISFDISALQG TIDDLVTKLGDIRGVSDVHLISVE >gi|225002531|gb|ACIZ01000048.1| GENE 46 46258 - 46761 412 167 aa, chain + ## HITS:1 COG:no KEGG:LGG_01008 NR:ns ## KEGG: LGG_01008 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 167 1 167 167 293 100.0 2e-78 MKIAFKLLLWVLVAGVALFPALLLILFVIGLSVVISGALAVSAVGFVMGTIFVALVGLGI MIPSVLLIIRFMTFRTVNARFQRGGERLVLPVRVHLTGRAIYHAIYENYKAGRRQGKHVF QAWSFGLETYFHEDLQAYLADQILAQHGPEMAEAFVLDKRHSYTIAY >gi|225002531|gb|ACIZ01000048.1| GENE 47 46952 - 47296 306 114 aa, chain - ## HITS:1 COG:no KEGG:LGG_01009 NR:ns ## KEGG: LGG_01009 # Name: not_defined # Def: acetyl-CoA carboxylase carboxyltransferase subunit # Organism: L.rhamnosus # Pathway: not_defined # 1 114 1 114 114 203 100.0 1e-51 MAIAMTNDLKIIMERLTPLFKRRRKTRYWISLVNQTYTPAFNFFFNIQPKDQRLRSIPLH SLHNYDLAQLELFIGLLRQQTRLTIEFIGFEELRWPRTNRLIQRRPRADETWPN >gi|225002531|gb|ACIZ01000048.1| GENE 48 47277 - 48584 980 435 aa, chain - ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 4 430 6 426 426 356 43.0 6e-98 MRYDYSHEPHRVIFLIDNKSFYASVESIERGLDPLKTVLVVMSEQENTNGGLILATSPMA KKMYGLKSNVSRQRDLPNEPHLIVVPPRMNLYIKKNLAINDIFRQFVADEDLWPYSIDES ILDLTHTWRLFGKTPRAVAKLIQATVHQQLGLRTTVGMGENPVQAKIALDVYAKHNSDLL GEITYATVPETIWRIKNMTDVWSIGHRTAAHLARMGITSMYELAHANPYALKQELGILGT QLFATAWGIDRTKISQRIVTRQPSIGNSQVLPRDYRNQFEIEIVIKEIGEQVAARLRHHR KRAGEITLGIGFSYAESQADGRTGFSQAKRMLPTNRDSDIVTTLREIFRDNWHGEVVRNV AVYTSRLAPDTGEQLNFFEPIDQQIKATNLERTLDAIRNRFGFKALVYAKSAMHGGTAIQ RASLVGGHNGGNSYD >gi|225002531|gb|ACIZ01000048.1| GENE 49 48734 - 48913 188 59 aa, chain - ## HITS:1 COG:no KEGG:LC705_01090 NR:ns ## KEGG: LC705_01090 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 59 2 60 60 94 100.0 2e-18 MLSEKWRPLIVTLSVIAAIFTALFVLAFVTHGWTAIAPDTMMHGFTSWASSWHMGGCMR >gi|225002531|gb|ACIZ01000048.1| GENE 50 49029 - 50213 742 394 aa, chain - ## HITS:1 COG:BS_yvbJ KEGG:ns NR:ns ## COG: BS_yvbJ COG4640 # Protein_GI_number: 16080441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 7 234 3 220 605 72 26.0 2e-12 MQTPLRFCPNCGQPIKPDDDFCPNCGFDLRSARLQAQQTSENEASTPQPPTTPASTTAAA PAPTRHTPHSHRRWPWIVGIVVILIAGCAYLAGAAYYSQDRQVAELAEEMTSGDADDMAE VAVASDGTPLHEDDLKPLAQLIEDRHYRSLLNTMIRAKSTSGMVQVVKRGQEMLFFPKYK VKLGTTAVTVKTNLKNAALTLNHTPVQAANHNGQYTINNQLPGRYTLKLSGTHDGATKDF TRDVIVPLKGQAAALTLDAAAASSNTASSSSQASQTSRDTDDDDDDDYDDNGVTKTNRTY PSDTSKRNDNHSTSGIVGRWESGDRATFNFNSDGTYTATNNNTPSNGTWEVVYRDDNILN IKFTKPDGTSVVEPFALDDGDLIETNLKIKWERD >gi|225002531|gb|ACIZ01000048.1| GENE 51 50217 - 50999 576 260 aa, chain - ## HITS:1 COG:CAC2619 KEGG:ns NR:ns ## COG: CAC2619 COG2755 # Protein_GI_number: 15895877 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Clostridium acetobutylicum # 63 254 79 259 273 82 28.0 5e-16 MKKIWLGLGVLLLLLAAGCGVSRQAAKSSRSSAPVRSRQASAASTPPRPTRLAQLKAKSK TQLVYAPFGDSLSVGLFADKKATRFTSLFARQLARLTSKTVTEAGIAEVGKTATNLGVPA LPQLIAQHPDVITIEFGTNDAVGGATPTALAAYQQALTTIVTTLQKETSAQLILMTTWSP NKGPYVNADLKFDAVVKAVGQTYQVPVVDLATIWQGHDDVTGPAGTVIPDFTANGPRDTF HPNQRGHDQIAAQLIKTLEE >gi|225002531|gb|ACIZ01000048.1| GENE 52 51050 - 51370 237 106 aa, chain - ## HITS:1 COG:no KEGG:LC705_01093 NR:ns ## KEGG: LC705_01093 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 106 1 106 106 184 100.0 6e-46 MEMRNGRNSFFDGGLLAYIGWAILGTVITIATFGICYPWALTMLYGWKINHTVIEGHRMH FYGSAVGLFGNWIKWLLLSIITLGIYSFWVFIKLEDWKARNTRFVS >gi|225002531|gb|ACIZ01000048.1| GENE 53 51665 - 53917 2260 750 aa, chain + ## HITS:1 COG:SP1087 KEGG:ns NR:ns ## COG: SP1087 COG0210 # Protein_GI_number: 15900955 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pneumoniae TIGR4 # 3 747 1 761 763 820 55.0 0 MVMDAALKGMNDKQAEAVLATEGPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAI TFTNKAAREMRERVGKLVDPEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ LTLVKHILADFNLDPKRYDPKSILGAISGAKNELIDPQTYSDEQANSPFTKTVAQVYAEY QKRLRSDQALDFDDLIMQTIVLFEKDPETLGFYQRKFRYIHVDEYQDTNEAQYRLVHMLA EGYHNLCVVGDADQSIYGWRGANMQNILDFKKDYPKAQVILLEQNYRSTKTILSAANDVI KNNLNRQAKTLWTENATGDKITYYRAQSETDEAIFVIRRIEAEMAEHHRKYGDFAILYRT NAQSRAIEEAFVKSNIPYKMVGGHKFYDRKEIRDALAYFRLVVNPDDDMSFNRIVNEPKR GIGNTSVAKLEAFANQHDWSLLEAAANAELSPISGKARGNLAQFGKMIQRLGQRRKDLNV TEMMQAILDDSGYLGTLRAANTLEAETRVENLEELLSVTQGFDARYQPENEDSDIFVDFL AELALLSDQDEVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLSRAAMDEGELEEE RRLAYVGITRAKQKLYLTNAYARMLYGQRQNNPASRFIEEIDPELLDISGAAQPKSDIPF INRTDRAFSSPYSRHPETTGTPVTVKPAPTTGAGKTSWEAGDKVEHRKWGIGTVVKVTGT GDDQELDIAFKAMGIKRLLAAFAPIKKVEA >gi|225002531|gb|ACIZ01000048.1| GENE 54 53965 - 55989 1769 674 aa, chain + ## HITS:1 COG:L0304 KEGG:ns NR:ns ## COG: L0304 COG0272 # Protein_GI_number: 15672401 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Lactococcus lactis # 15 669 4 652 654 699 55.0 0 MLSKPAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFP KLVTPDSPTQQVGDVINSDFAKVRHPIPMLSMGDVFSFEELSEWDARMQANVGHAVDYNV ELKIDGLALSLIYENGRLVQGSTRGDGNIGEDVTKNVLTIASVPKTLKRPLSLEVRGECY MPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPKITAGRELDTFIYTLIDADRFNV KTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKVNDLAL QAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAGTTVARA TLHNADMIRDKDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANTPPAPIPEECPSCGQKLV HLDDEVALRCINPMCPAQVQEQLTHFASRNAMNIDGLGPKIIAQLQAKKLVTDVADLYRL TATDLEKLDKFKEKSINNLLNAINNSRQNSVERLIFGLGIRHVGGKAARILAEHFGSLDE LMAADQDQVAAIPNIGPTIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPTRPAVSDSF VSGKTVVITGKFAEFSRPELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNV PIMDETALLTNLKN >gi|225002531|gb|ACIZ01000048.1| GENE 55 56002 - 57153 1090 383 aa, chain + ## HITS:1 COG:lin1869 KEGG:ns NR:ns ## COG: lin1869 COG4851 # Protein_GI_number: 16800935 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Listeria innocua # 1 380 1 370 371 220 34.0 3e-57 MKKFFTLTLLTGAIVLLAACGKLNLDSGSSSTGGTKTGSYQTTGTVDNSMYQGVIKNGRY QTSSARGLMLQQNDQGENTFNIKSMESGLESLAKAQFSTDKYSFEEGQLLSTATARSWLK RESKSNPDGLNPVDNGKKDPDTRNPMYLQQILEQDFMVQDGNSMKLGGIAIALGMNQVDY YTKTEYGAQYQTEISEATLKKQGEAMAAKVVARLRKMEKVPSDVPILVGIYKNAEQDSLV GGVYVEHATSKSGTDLGSWKKLNQQNEILPVVSDHKAINSTVANDFSSFTNQVKGFFPTL AGITAQAHYEDGNLSGMKITVNTQFYGLTEIQSFTQYISTAANKYLPSGVPIEITIQSTQ GIQAFVSRSSGDKGFYTHVFGSY >gi|225002531|gb|ACIZ01000048.1| GENE 56 57205 - 57501 338 98 aa, chain + ## HITS:1 COG:SPy1772 KEGG:ns NR:ns ## COG: SPy1772 COG0721 # Protein_GI_number: 15675616 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Streptococcus pyogenes M1 GAS # 2 98 3 99 100 71 46.0 4e-13 MISKDSVAHVASLAKLQFSEADLEKYTGQLSEILDMVEQLESVSTKDVPVTTQSIHLENA MRPDVAKPSEPVAELLKNVPTKKGTYIQVPAIIDKEED >gi|225002531|gb|ACIZ01000048.1| GENE 57 57505 - 58959 399 484 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 10 473 11 454 468 158 30 9e-38 MDYFKTNLDQLHEQLRSGKLTSRQLVDETLAGIDKIDPEVAAFLAINADGAKKQAAAIDE AGIADDQPLSGVPIAIKDNIVTKGVVTTAASKILENFNPIYDATVMQKLAAAGAINVGKT NLDEFAMGSSTENSAFKTTKNAWDHSRVPGGSSGGSAAAVAAGEVIAALGSDTGGSIRQP AAFNGIVGFKPTYGRVSRWGLIAFSSSLDQIGTLTRGVKDAAQILNVIAGHDERDSTTAD TPVPDFTAKIGQSIKGMKIALPKEYLGEGVDPEVAAKIKAAAKQLEALGATVSEVSLPHT QYAVPSYYIIASSEASSNLQRFDGIRYGFRAKDVHNIEDVYVRSRSEGFGPEVKRRIMLG TFSLSAGFYDAYFKKAGQVRTLITRDFEAVFEDYDLIIGPTTPTVAFKIGEKVTDPVTMY MNDILTIPVNLAGLPAASVPAGFVDGLPVGLQLIGKHFDESTIFQVAAAFEAQNDYLAQI PGGK >gi|225002531|gb|ACIZ01000048.1| GENE 58 58961 - 60391 1334 476 aa, chain + ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 1 476 1 476 476 633 64.0 0 MNFETTIGLEVHVELKTKSKMFSPAPVTYGQEPNTETNVIDWGFPGVLPSINRGAYQLGI MVALALHADITRQTHFDRKNYFYPDNPKAYQITQSEKPLGTNGWVEIEVDGKKKNVGIAE LHVEEDAGKNQHEDDGYSYVDLNRQGTPLVEIVSKPDITSPEEAYAYLETLRQIVQFTGA SDVKMEEGSMRVDTNLSVRPIGQKHFGTKTEIKNLNSFVHVRDGLAYEEKRQQAVLLSGG EVRQETRRWDPDTKETILMRVKEGADDYRYFPEPDLPPVTVSQQWIDEVQATLPQPPAER REHYIKDWGIPAYDAGVLTQTKEMSDFFEATVAQGADAKQASNWLMGEVSGYLNAKHTEL GDVALTPEHLAGMIKLIGDGTISSKMAKKVFKEIIQHDTDPDQWVHEKGLIQLSDPAKLT PIITTVLDNNQQSIDDFKAGKDRAIGFLVGQIMKQTHGQANPKVVNQILMTEIKKR >gi|225002531|gb|ACIZ01000048.1| GENE 59 60603 - 61637 949 344 aa, chain + ## HITS:1 COG:SPy0752 KEGG:ns NR:ns ## COG: SPy0752 COG1597 # Protein_GI_number: 15674801 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 4 311 6 314 340 359 57.0 4e-99 MRKRARLIYNPTSGNEGLKRFVPDILNIMEQAGYESSAFQTTPKPFSAREEAKRATEAGF ELIVAAGGDGTINEVVNGIAPAKKRPKMAIIPAGTTNDYARALRISRDDPVEAARVILKG QTLAMDIGQANHHYFMNIAAGGLLSELTYSVPSEVKSIFGYFAYVIKGAEMLPAVRTMPM KLEYDGGVYDGPASMFFLGLTNSVGGFEQIVPDAELGDGKFSLIIVKTANMANLLKLMAL VFNGGRHVDDPNIVYTKTKKLKVKTSGQDTLKINLDGEYGGDAPMTFVNLKQHIAMYANV DEIPTKNLGTDAQKQRDYMAEVESISHRDIDGDGQIGAQDEKDD >gi|225002531|gb|ACIZ01000048.1| GENE 60 61639 - 63000 1236 453 aa, chain + ## HITS:1 COG:lin1863 KEGG:ns NR:ns ## COG: lin1863 COG2265 # Protein_GI_number: 16800929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Listeria innocua # 1 452 1 452 453 453 50.0 1e-127 MAQPAVTKNQDLEVTIEDLTYEGMGVAKVAGFPLFIEDALPGEKMQVHVLKTQKQYGFAK VVKRLTDSPDRVAGADSTYIRTGIAPLSILAYPAQLKFKQHQIQELYKKAHLAIKVLPTI GMKHPLGYRNKAQVPVRLVRGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLR KYQVPPYDERTNRGVIRNIMVRRGRATHQMMLVLVARTWQVPHLNDIVEEITLALPEVTS VVVNLNDQRTNVILGRKSKTIYGRDYLLDKLLGSEFQISPVSFYQVNPIQTEVLYTKAIE AAGLTGKETVIDAYSGIGTISLTMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTFEV GKAEDVMQKWKDADLPVDVLMVDPPRKGLDKTFIDAVGYMKPPKMVYISCNPATLARDLQ LLTAFGYTAKETQPVDMFPQTQHIESITALTLG >gi|225002531|gb|ACIZ01000048.1| GENE 61 63286 - 64485 858 399 aa, chain + ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 10 367 9 366 393 219 36.0 8e-57 MQHKTLAMKWLFLGSLITNTGISLIWPLTTIYMHEYLGESLTVAGIVLFLNSMFMVIGNS LGGWLFDHWQPYGTVLAGICLNLGATGLLIFFHGWPAYPLLLVISGFGSGITATAINSYA TRIRDKRPSVVFNILYFTSNLGLVIGTLIVGFVLPYGIAMVFALAALLFAVFLVVAIWHY RIEKETPTAAEQPVAHGSRNPARPRLIMLMVTLFVTWLMYEQWQSNISAFMLSEGLTVKD YSFLWTVNALLIVLFQPVLTAFDHWLLQHIRLRLIGGFVLFAGSFLILLNGSGQYLTFIV AMVVLTLGEILALPAVSTYVTLFTPLAQQGRYQGLIQGFASAGRALGPLLGAMVIEGTQS YRLLFVGATGLILLAVLGFAFTVRESIPALNDPLHPAAH >gi|225002531|gb|ACIZ01000048.1| GENE 62 64563 - 65378 748 271 aa, chain + ## HITS:1 COG:VC1364 KEGG:ns NR:ns ## COG: VC1364 COG0561 # Protein_GI_number: 15641376 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Vibrio cholerae # 3 269 2 268 273 115 30.0 1e-25 MHYRLILSDIDGTLLNSKHELTVGVKQAIQHYVAAGGTFVLASARPPLAMTALAQQMGLA VPLVSLNGAVIAQPTDDKKLKVLATTPWPAGIAAKVYTALFSLTLSLNVFSDTHWYVADT SQWTRQEAAITGFAPETVPIETGLANGLPVHKLLCMGEPDVIDRAEQIVLAHPEWQLVAS RSKATYLEIVRQGVSKEAALKTLSHLFDIPMAATMALGDGENDLPMLQAAGLGVTLENAL PQVLDVIKTVVPDNDHDGAAVAIKQYAMGEG >gi|225002531|gb|ACIZ01000048.1| GENE 63 65454 - 66329 685 291 aa, chain - ## HITS:1 COG:all2088 KEGG:ns NR:ns ## COG: all2088 COG2326 # Protein_GI_number: 17229580 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 27 285 28 281 289 276 53.0 4e-74 MTLEKYRFDGTSTFNIQAFATAPPEHFQNKKEQIKADIDHNIKVLSKVQQHLAAQKQYSV LIIFQGMDAAGKDSMIEHVMSGVNPQGTSVVSFKIPTELELGHDFLWRIHNAFPAGGELT VFNRSHYEEVLVDRVHPELLLKENLPGIDTVADVHDDLWARRFNDIKALETYAHRNGILL LKFFLHISKAEQKNRFLKRIEIPEKNWKFSLADIHERRFWDDYQQAYQEAIQHTATKTNP WYVIPSDDKWYSRLVVSQIINREVTALPLKYPEISTAQKQELEQAIIDLKD >gi|225002531|gb|ACIZ01000048.1| GENE 64 66452 - 68350 1396 632 aa, chain + ## HITS:1 COG:L49741 KEGG:ns NR:ns ## COG: L49741 COG3590 # Protein_GI_number: 15673785 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Lactococcus lactis # 3 630 1 627 627 394 36.0 1e-109 MTLPRIQDDLYLAVNGEWQAKTPIPPDKSVVSADSNLTDDIRQKLVADLSTMMQTAKTLP LQYAARLFAKANDQTRRQQLGIEPVRDRISFLMTLTTLDQFRAAMPKLVADQYVLPISPY VDADMHDAEHNILNLGGPDTILPDAAMYQQEDAENAADLAAWSQMAAAMLAAAGFSQTDQ TAYVEAAKRFDRRLADYVPANVDLAVDSTYDNPLSWQAFEDAAGYLGIPQAFATYMLQTP AKVNAVVPAYLPHLSKLLTADNYSEWHAWMVINELLTCATYLSDDLRQLAGQYDRFLAGQ PEASSWTKHAFGIANEYFDDVIGQYYGQTYFGADAKADVTAMVKQILAQYRVQLENNTWL SPATKQKAMRKLATMQVKMGYPERLFSLYDHLSVDADDDLLTAILKLSAQTQAFWFKQVG QPVDRNQWNMPGHLVNASYDPLKNDITFPAGILQPPYYSLKWTRAENLGGTGATIGHEIS HSFDNNGALYDEHGNLHNWWTPADKQAFDQLVKAMAAQFDGRDYEGVKVNGTLTVSENMA DNAGMDVALALLGDQPDVKDLQAFFITYARSWATKMRPERAKTVLRQDVHAPATLRVNVP VQNFPAWYQAFNVQPQDGMYRQPQKRLTIWHR >gi|225002531|gb|ACIZ01000048.1| GENE 65 68478 - 68933 427 151 aa, chain - ## HITS:1 COG:BS_yhfO KEGG:ns NR:ns ## COG: BS_yhfO COG0454 # Protein_GI_number: 16078095 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 144 1 142 149 66 32.0 2e-11 MAVRPAVATDIPLLLPLVQGYYHDSPVPLTIDSQAMALHLDRLRSDTSLGHLLVATVDQE LAGFAILYRSFETRALKPLLIINDVYVAPKFRRHGLARQLMIAAFDLAKAHGYSGASWQT RTSNLGAQHLYDQIGERETGWLHYYHDLSQD >gi|225002531|gb|ACIZ01000048.1| GENE 66 69313 - 70185 692 290 aa, chain - ## HITS:1 COG:L123851 KEGG:ns NR:ns ## COG: L123851 COG1307 # Protein_GI_number: 15673853 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 2 290 3 289 289 191 37.0 2e-48 MYQLLTDSCCDLPYQTLHDHQVEFVSMHFTVNGTDYEDDLGEDHYDINAFYEQLKQNVMP TTTQVNVGQFVDFFTPYVKANTPILYVGFSSGLSGTFNSATQARAMLLEKYPDAQIYLVD TLAACAGEGQLVLDAIEKRDAGMPIDELAHWLTAHRLDYRMWFTVDKLDFLYHGGRVSRT SAALGTMLNIKPVMDVDTAGKLRVVRKVRARKRSLIDLANETLKAIQENPQHRVIISTSG DFEAANFVKDRLHEASPQTPLQIGNIGPTIASHTGFGCVAVFSMAASERK >gi|225002531|gb|ACIZ01000048.1| GENE 67 70377 - 71309 1020 310 aa, chain - ## HITS:1 COG:CAC1052 KEGG:ns NR:ns ## COG: CAC1052 COG0330 # Protein_GI_number: 15894339 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Clostridium acetobutylicum # 21 300 16 308 322 170 39.0 3e-42 MNIILISVLVIVLVIVIAILFTSVAIIHTGEVGIVERLGKYVATLEPGFHVVPPFIYRIT EIVNMKQIPLKVDEQEVITKDNVVVRISETLKYHITDVNAYVYQNKDSVLSMVQDTRANL RGIIGNMDLNDVLNGTETINQTLFQQIAETTAGYGLNVDRVNIDSIQVDATIQDSMNKLL RASREKEANIMEAEGHKQAAIAKAEGEKQAAILEAEANKQTQILQAQGHAESQRLIAAAV KDQINSINAGLIDNGDLYLKYKNVEALEALAKGTANTVVLPSTAIDSLGSLPAVGTLFNQ KQPSASTKEK >gi|225002531|gb|ACIZ01000048.1| GENE 68 71351 - 71545 314 64 aa, chain - ## HITS:1 COG:no KEGG:LC705_01109 NR:ns ## KEGG: LC705_01109 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 64 1 64 64 114 100.0 7e-25 MLDDRLLGTTFVLPTSHQEGEITLYGIHYHYRVTDDAAAGDTVVVNAVSPLYLSVVKPEH RLHY Prediction of potential genes in microbial genomes Time: Wed May 25 19:45:46 2011 Seq name: gi|225002530|gb|ACIZ01000049.1| Lactobacillus rhamnosus LMS2-1 contig00052, whole genome shotgun sequence Length of sequence - 3692 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 151 - 188 9.1 1 1 Tu 1 . - CDS 199 - 555 441 ## LGG_01042 hypothetical protein + Prom 685 - 744 5.3 2 2 Op 1 1/0.000 + CDS 881 - 1834 955 ## COG0673 Predicted dehydrogenases and related proteins 3 2 Op 2 . + CDS 1892 - 3187 952 ## COG0513 Superfamily II DNA and RNA helicases 4 2 Op 3 . + CDS 3225 - 3554 406 ## COG1447 Phosphotransferase system cellobiose-specific component IIA Predicted protein(s) >gi|225002530|gb|ACIZ01000049.1| GENE 1 199 - 555 441 118 aa, chain - ## HITS:1 COG:no KEGG:LGG_01042 NR:ns ## KEGG: LGG_01042 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 118 1 118 118 223 100.0 2e-57 MASFLRGLKHLLAHHGHHQKAQDKAPNPALALAKNFTGSFAFLDEQTNKTHSLAISPQLQ IKIDNKTLPGQVVGITINELTFLDHYGYKLVIKADDNGPQTIYDEAEDATYAIIIPSA >gi|225002530|gb|ACIZ01000049.1| GENE 2 881 - 1834 955 317 aa, chain + ## HITS:1 COG:lin1837 KEGG:ns NR:ns ## COG: lin1837 COG0673 # Protein_GI_number: 16800904 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 2 317 1 323 327 239 42.0 3e-63 MLKLGVIGTGWITKQFVDAAAATKAYTLTAVYSRHQESAQAFIDQTAPATAYTKMDDFLG SDVDVVYIASPNSLHASQALAALDAGKHVIVEKPLVATAMEFEKLDEALRKKPSLYLFEA ARHVYEHNFQVVDQFTHHHPIDGATLTYMKYSSKYDAFLAGKLPNVFNPEFAGGALMDLG IYLVYDAVAWFGVPDNAVYLPHFLKSGVDGDGVARLDYDQFAVTLITGKTTNSFLPSEIY SGKQTLTMDNAAELETIKLDDQVLSTEKLANPMEAEAAYFAKAITGHDRNAFDKAWQLAK EVHQVMSILRTSANLDF >gi|225002530|gb|ACIZ01000049.1| GENE 3 1892 - 3187 952 431 aa, chain + ## HITS:1 COG:lin1833 KEGG:ns NR:ns ## COG: lin1833 COG0513 # Protein_GI_number: 16800900 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 3 346 6 349 442 237 39.0 4e-62 MTIATPFQKRWQAAGYTEQTPIQAAVYQPLKTDEDVIGLAPTGSGKTLAFGLPLLEKIVP GDGLQILILAPSQELAIQTRDVLTPYAHDINVAVQGIIGSANVKRQLTKLKEKPEVIVAT AGRLLELIQSHKLKLDGLQTLVVDEADEMLRDPGFDQVREIAAAAPADAQLAFFSATPSP YFSEMHKWFGKTPKLVDVRAIDQTRGTVRHLFLQTDRAHQIDWLRTLAHTDGFKALVFFN QNASLERAAGILRHQAVRFAVLSREGRQTSRQKALTDFRNGRITLLLVTDMAGRGLDIPK LPAVVNFEPPKRAEAYIHRAGRTGRMGEPGLVVTLGDDHDRRDLKKLVPQYAIQRAYMTD GKLVTTPPARKPDNETPVTLKSPAPSQHKSQQVAAKDRSVVTNEPEQKPRRKHKKKRLRD QRNKGKHKNNT >gi|225002530|gb|ACIZ01000049.1| GENE 4 3225 - 3554 406 109 aa, chain + ## HITS:1 COG:lin1830 KEGG:ns NR:ns ## COG: lin1830 COG1447 # Protein_GI_number: 16800897 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 12 103 7 98 100 66 45.0 1e-11 MASMKAEQMAAMMTLMSAAGDAEQATMAAIEAAKADQIDRSRKLLKHADAKLKQAHQAQT QMLTYEARGQKVDVTLLMVHSQDHLISAMTIRRLADDIIDLYQQVHAQK Prediction of potential genes in microbial genomes Time: Wed May 25 19:45:50 2011 Seq name: gi|225002529|gb|ACIZ01000050.1| Lactobacillus rhamnosus LMS2-1 contig00053, whole genome shotgun sequence Length of sequence - 5721 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 19 - 441 538 ## LC705_01119 hypothetical protein + Term 622 - 653 2.5 + TRNA 538 - 611 81.0 # Arg CCT 0 0 + Prom 540 - 599 78.2 2 2 Op 1 . + CDS 696 - 1418 654 ## LC705_01120 hypothetical protein + Prom 1450 - 1509 8.0 3 2 Op 2 . + CDS 1535 - 3316 1527 ## COG0514 Superfamily II DNA helicase - Term 3293 - 3333 1.1 4 3 Tu 1 . - CDS 3555 - 4790 1092 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) + Prom 4901 - 4960 6.5 5 4 Tu 1 . + CDS 5065 - 5673 585 ## COG1309 Transcriptional regulator Predicted protein(s) >gi|225002529|gb|ACIZ01000050.1| GENE 1 19 - 441 538 140 aa, chain + ## HITS:1 COG:no KEGG:LC705_01119 NR:ns ## KEGG: LC705_01119 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 140 1 140 140 256 100.0 2e-67 MKIEKTLQTPAAFLYSKIVAPVQADIAAASHRKVEVDELAGYTYRKQFPDGEWAKVKITQ NVINREFAMLTMTRFSRFKVRYLITPLSADASRVQVSETVQPVNWAAQLKQMVTELFVGH KRRRNVGRMLDSIERSYMTA >gi|225002529|gb|ACIZ01000050.1| GENE 2 696 - 1418 654 240 aa, chain + ## HITS:1 COG:no KEGG:LC705_01120 NR:ns ## KEGG: LC705_01120 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 240 1 240 240 373 100.0 1e-102 MQAFMAIYVPGWLIFIGGIVLISTVNGATVQALVNRVGRSNTQIWYMKPGIFVHELLHAI VARLFGLQVTNFSLRADPRQGSAAHVSLQYQRHNPIAQLGLFLSSSAPVWGISLILLVLG RWAFFSAGSQVWQVFATTASLGEKWVMMREMMQINWRWLLIFFVLTLVLTPGVALSHRDL QNMWQSAPIAFLVTIVIFYSLLTFWPAGFAWWAWVNLNLLLLNLVMLSFSLLIWLLVSMF >gi|225002529|gb|ACIZ01000050.1| GENE 3 1535 - 3316 1527 593 aa, chain + ## HITS:1 COG:L0268 KEGG:ns NR:ns ## COG: L0268 COG0514 # Protein_GI_number: 15673790 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Lactococcus lactis # 10 583 7 584 592 650 54.0 0 MLLPQPATILKEKFGYDHFRAGQKQAIERIMTGKSTLVVMPTGGGKSLCYQVPAMILPGL TLVVSPLIALMKDQVDALNDNAIPAAFINSTLDYREITARLEQARSGNIKLLYVAPERFD ADWFLQQLGDMNISLFAIDEAHCISQWGHDFRPSYLNLANVAAQLPSQPPVIALTATATP RVAQDICQRLMIPDDGVINTGFERDNLSFKVVRDQDEDRYLLDYLKLNVDQSGIIYASTR KEVDRIYAFLQHKQLPVAKYHAGMTEKQRAANQEDFLFDRKPIMVATNAFGMGIDKSNVR FVIHAQIPKDLESYYQEAGRAGRDGLPSEAILLFRPQDLQVQRFFIEQSEGDEAHQRRQY DKLKIMERYANTDQCLQQFILNYFGQTGTAPCGRCSNCLDDRESVDVTIDAQKVLSCVVR LHERFGKGVVAQVLAGAHNQRVLSFHLDQLSTYGLMKNRRQRDITTFIDFLTAGGFLETR GGQYPTLGLTAKGAEVLRGQTTVFQKTAQKVTQTLEVDDTVFQELRSTRRQLAEQQHLPP YMIFSDKTLKAIGNAMPKTLDELLAVKGVGQAKLDKYGQIFLDVLQAIQTEKA >gi|225002529|gb|ACIZ01000050.1| GENE 4 3555 - 4790 1092 411 aa, chain - ## HITS:1 COG:SP0278 KEGG:ns NR:ns ## COG: SP0278 COG2309 # Protein_GI_number: 15900212 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Streptococcus pneumoniae TIGR4 # 1 411 1 412 413 458 55.0 1e-129 MTLSNFKESLKKYAELAVDIGEAVKPGDTVYVQISVDQAQLARLIVAAAYQRGAAEVQVQ WFDDVLKRLDMAHMADERLFNIPAFVKGQFDYWVDHQAKRITVVSSDPDNLAGIDSNRIA KYQEAFAKAYKRLMEAISSMSISWTIIGAASPRWAQKVFPDAATPEEATELLWEAIFKTT RIDQPDPEAAWKAHDQKLREKAAWLNNEQFDQLHYMAPGTDLVVGLPKNHIWEGAGAFNP RGEEFMANMPTEEVFTAPDFRRIDGTVASTKPLSYGGNILEDMHFTFKDGQVVEAHAKQG DDVLQNLLKTPGARSLGEVSLVPDPSPISQSGLIFFNTLFDENASDHMALGQAYPFSVKD GVAMTNEQRAAVGLNQSPTHVDFMMGSAAMNIDGIKPDGTIIPIFRNGDWA >gi|225002529|gb|ACIZ01000050.1| GENE 5 5065 - 5673 585 202 aa, chain + ## HITS:1 COG:FN1004 KEGG:ns NR:ns ## COG: FN1004 COG1309 # Protein_GI_number: 19704339 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 169 1 168 188 72 24.0 7e-13 MARKKTITHDQILNAAYDLVVEQGFKSFTARNIAKKMNCSTQPIYLEFKNMAELKQAVMD RIKELLALKMAKHYTNDPVVDLGLAYIYFALENRPLYRAVFVEDHFGVDEMREYAMSTAM RVFDAYEPAKNLSEAQLRNTICGVWIVATGIANLMAPGFIDITRDQMVDILTAVTQDFIV NGRFSDDPRISWFEKAKVAQGY Prediction of potential genes in microbial genomes Time: Wed May 25 19:45:59 2011 Seq name: gi|225002528|gb|ACIZ01000051.1| Lactobacillus rhamnosus LMS2-1 contig00054, whole genome shotgun sequence Length of sequence - 6494 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 5, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 352 - 411 3.4 1 1 Tu 1 . + CDS 476 - 1852 1113 ## COG4320 Uncharacterized protein conserved in bacteria + Prom 1902 - 1961 6.1 2 2 Tu 1 . + CDS 2008 - 3012 834 ## COG1295 Predicted membrane protein + Term 3047 - 3084 4.7 - Term 3035 - 3072 8.5 3 3 Tu 1 . - CDS 3086 - 3547 596 ## COG0716 Flavodoxins - Prom 3576 - 3635 5.2 + Prom 4184 - 4243 3.6 4 4 Tu 1 . + CDS 4401 - 5225 779 ## COG0024 Methionine aminopeptidase + Term 5285 - 5326 6.0 + Prom 5286 - 5345 8.5 5 5 Tu 1 . + CDS 5407 - 6453 869 ## COG0463 Glycosyltransferases involved in cell wall biogenesis Predicted protein(s) >gi|225002528|gb|ACIZ01000051.1| GENE 1 476 - 1852 1113 458 aa, chain + ## HITS:1 COG:XF1486 KEGG:ns NR:ns ## COG: XF1486 COG4320 # Protein_GI_number: 15838087 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Xylella fastidiosa 9a5c # 63 451 44 443 451 87 22.0 6e-17 MGSSSDLKDLLRERVATKYTIDDLKETGKKIRQAVPIENLGAVSKIDRDPVQFINSVEQN LIKSLLPMRHQRMGASQAAFFRGTAELMAYDLRQGEKSGINLLIDGDAHLQNFGFYASPE RNLLFDLNDFDEAQINSFEFDIKRLLTSVYLLGDQQGFDSDDLDDLVQNDASIYRKTLRD LFKLGALDRFYQSTEVERLVQVIPGAEDSPLLAKFIKKATKRNNDSVIKKYTETNEAGHM RFKDDPPSSVHIDQTTYQAIYDGFTQYRKTTRPDILVLLSQYRITDIIHHSVGIGSFGTN CYLILLSGLGGSHLVLQVKEALPPRRELLPNMERMTLQQEVSQGQRIIAAQMILQKASDP FLGWFNMDNKSYYVRQFRDMKGSVDLDELSFPEFKYYTQITAYLLAMAHAQTPQAAVVTG YLDKHFDSAVQTWSKWYLNQVKADYSAFMRAVKQRVLA >gi|225002528|gb|ACIZ01000051.1| GENE 2 2008 - 3012 834 334 aa, chain + ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 49 302 24 277 289 177 36.0 3e-44 MGRKKHPLKRSLLSAKQAADIRSGRTALADMKLPKRTKFWVFIKLAINRISDSNIGQSAA ALAYYTLLSLFPLILFVANALPYLGLKYSSLATYLTQAVPANVMEWLDPIIANLLDSSSG GLLGIGAIATLWAASLGVTGLKMGFNQVYGVEATQNFIIQRLLSMLMTFTLIIVMGAILI AFAFGRQFLEWLIPLLRLDTSWLRTFNTLRWPITVTALFIIIMFLDYFLPNVKIKMWTVL PGTAFTVIGWLLIAQAFSLYMHYFGTRYLSYGTIGTFIAIMLWLNFSALVLLWGAVINAL TAEYFIGRLHSSKGKVHDFLKRRVKSAHSEKETP >gi|225002528|gb|ACIZ01000051.1| GENE 3 3086 - 3547 596 153 aa, chain - ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 1 152 1 149 149 141 57.0 4e-34 MASARIVYASLTGNNEDIAGIIEEAFEDLNVDVTTTEVSQALASDFEDVDICVTATYTYS DVGDGELPDEAVDFYEELQELDLTGKVYGCCGSGDRFYDDFATSVDDFDKAFAKTGATKG AENVKIDLSPEEDDIKHLEAFTKQLVDKFNAMQ >gi|225002528|gb|ACIZ01000051.1| GENE 4 4401 - 5225 779 274 aa, chain + ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 256 1 250 252 278 55.0 6e-75 MITIKSAREIKGMAKSGAILAAMHVGLRDIIKPGISSWEIEKFAKEFFESHGAKAEQVGF EGYKYVTCVSINDEVAHAVPRKGLKLKDGDVVSVDTVISWNGYFSDSCWTYGVGKVSEAD QKLMDVTKKSLYLGIDEAVVGNRIGDIGAAIQTYTEDDNGYGDVRELVGHGIQPTMHESP NVPHYGVPGHGLRLKAGMTITIEPMITEGTWKIKGKQVPGDTWEYYVTADGSKCAQYEHT LVITDNGPKILTSQGDPIDAKYQLTEDDLKTLPE >gi|225002528|gb|ACIZ01000051.1| GENE 5 5407 - 6453 869 348 aa, chain + ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 6 266 4 263 328 117 27.0 3e-26 MAGHEAVVSVIMPVYNAEKYLTQALDSLLAQDYPNFEVLCVDDGSMDTSKVILATYARQN PRIRVIHVENGGQARARQIGIQHAKGSLITFMDSDDLVHPQWLATMAEGMRAPRVDMSVV NYYNYIGGTKLKARSFHEKAFKIAGDDKYRYWLEDRDLRGYLWNKMFRAELFSQPVPVAN FNLLEDAYFIGQLLPRIDQINFIDEPLYYYRFNATSSVHAKFQKRDLEAIHQLGAVFLTL AREKPELTSLAVRRYAALSLFVLSKMSPRQLVANWGYVQQLGMVLAQYAREFQGIISAGD ADDLATDKSDKASLLDKLRAWSHLLGLPTFDDLNKLANSEDENVKKES Prediction of potential genes in microbial genomes Time: Wed May 25 19:46:05 2011 Seq name: gi|225002527|gb|ACIZ01000052.1| Lactobacillus rhamnosus LMS2-1 contig00055, whole genome shotgun sequence Length of sequence - 22815 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 14, operones - 4 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 110 - 155 12.3 1 1 Op 1 . - CDS 210 - 443 331 ## LC705_01130 hypothetical protein 2 1 Op 2 . - CDS 459 - 668 396 ## LGG_01060 hypothetical protein - Prom 888 - 947 5.1 + Prom 821 - 880 8.7 3 2 Tu 1 . + CDS 1005 - 2078 924 ## COG1577 Mevalonate kinase + Term 2134 - 2176 2.4 + Prom 2117 - 2176 7.3 4 3 Tu 1 . + CDS 2281 - 3201 876 ## COG1210 UDP-glucose pyrophosphorylase + Prom 3352 - 3411 5.0 5 4 Tu 1 . + CDS 3524 - 4384 489 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases + Term 4490 - 4540 15.8 6 5 Tu 1 . - CDS 4674 - 5534 315 ## LC705_01135 glycosyl transferase group 8 + Prom 5767 - 5826 9.2 7 6 Tu 1 . + CDS 5873 - 6889 619 ## LC705_01136 glycosyl transferase galactofuranosyltransferase 8 7 Tu 1 . - CDS 6893 - 7081 79 ## LC705_01137 hypothetical protein - Prom 7176 - 7235 8.2 + Prom 7033 - 7092 5.4 9 8 Tu 1 . + CDS 7155 - 10226 2326 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 10246 - 10294 10.0 - Term 10232 - 10280 6.2 10 9 Op 1 8/0.000 - CDS 10303 - 11769 1044 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 11 9 Op 2 . - CDS 11784 - 13619 1298 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 13862 - 13921 8.0 - Term 13992 - 14028 -1.0 12 10 Tu 1 . - CDS 14064 - 16712 1821 ## COG4485 Predicted membrane protein - Prom 16763 - 16822 7.6 13 11 Tu 1 . + CDS 17072 - 18799 1344 ## LC705_01143 hypothetical protein + Prom 18893 - 18952 4.6 14 12 Tu 1 . + CDS 18972 - 19670 610 ## LC705_01144 hypothetical protein + Term 19743 - 19790 8.6 - Term 19728 - 19781 12.5 15 13 Op 1 . - CDS 19783 - 20712 771 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 16 13 Op 2 . - CDS 20779 - 21423 516 ## LGG_01070 hypothetical protein - Prom 21459 - 21518 3.3 + Prom 21395 - 21454 3.4 17 14 Op 1 . + CDS 21534 - 21638 87 ## + Prom 21651 - 21710 1.8 18 14 Op 2 . + CDS 21730 - 22695 768 ## COG4129 Predicted membrane protein Predicted protein(s) >gi|225002527|gb|ACIZ01000052.1| GENE 1 210 - 443 331 77 aa, chain - ## HITS:1 COG:no KEGG:LC705_01130 NR:ns ## KEGG: LC705_01130 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 77 1 77 77 105 100.0 5e-22 MKTLIFNFKSEAGKSTSIRISKYEGDITAEQAQTFADAVAKAQAFKKEGIGLYATPVGAK VTETQSTEIFTTEKKPA >gi|225002527|gb|ACIZ01000052.1| GENE 2 459 - 668 396 69 aa, chain - ## HITS:1 COG:no KEGG:LGG_01060 NR:ns ## KEGG: LGG_01060 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 69 1 69 69 105 100.0 7e-22 MSRNVNKQTIVYTLTDPENEAFKQVRRMNNVAADAKDEQLVAIGQAFAKLYPNAALTSIV LQQNAEVTA >gi|225002527|gb|ACIZ01000052.1| GENE 3 1005 - 2078 924 357 aa, chain + ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 353 1 355 358 300 42.0 2e-81 MITAQAPGKLYVAGEYAVVETGFPAIIVALDQFVTVTVEATKHFGSIVSEQYQENSLYWQ RQGDEMVFDNRDNPFHYILSAIKLTEQYARELNKPLALYKLYIDSQLDAKDGKKYGLGSS AAVTVATIKALAKFYDLKMSKDQIYKLAAIAHLDVQGNGSLGDIAASVYGGWIAYRSFDK AWLAAARNQMSLSALINAEWPELSIELLTAPADMQLLIGWTGSPASTSQLVDKITLAKAK KPQLYHDFLTASRETLEKLINGFREHSLSHIQAGIRRNRELLDELAHFSGVAIQTPALRQ LVTLAEQAGGAAKSSGAGGGDCGIVLIDSHQAIQPLLAAWRKHHIEPLKFKVHEIND >gi|225002527|gb|ACIZ01000052.1| GENE 4 2281 - 3201 876 306 aa, chain + ## HITS:1 COG:SP2092 KEGG:ns NR:ns ## COG: SP2092 COG1210 # Protein_GI_number: 15901907 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Streptococcus pneumoniae TIGR4 # 1 293 1 295 299 400 72.0 1e-111 MSVKVRKAVIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEEAKASGIEDILIVEGK QKRSIEDHFDSAPELEQNLKEKHKDALLQLVHSTTDIGVNLFFVRQPYPRGLGDAVRLAK SFVGDEPFVVMLGDDLMNDKVPLTKQLIDEYDKTHASILAVKKVPHDEVSAYGVIDPEKE VSKDLYNVKKFVEKPAVADAPSDLAIIGRYLLTPEIFDILDNQKPGKGNEIQLTDAIDTL NQTQRVFAHEFKGDRYDVGNKFGYVKTNVEYGLTHPEVKDELRAYILDLAAKLQSGKHVG KPANKK >gi|225002527|gb|ACIZ01000052.1| GENE 5 3524 - 4384 489 286 aa, chain + ## HITS:1 COG:RP476 KEGG:ns NR:ns ## COG: RP476 COG1442 # Protein_GI_number: 15604339 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Rickettsia prowazekii # 30 204 284 458 517 63 26.0 3e-10 MLVATAITSLVKKYHSDREMKILVIIEGGNQDDINFIRSIPSLYGKQQISVDFWAPPYPL LDKVSDQFETGTSLPKMVLWRLFLPYYFPDYDQIAYMDNDILITTDINDLFDQMLPEDVI GGVLDYEDVTHPDHDRSKEFYLPSTDQYINAGVFVANSNAYRSVVPFEKMIEIINRHNYP YGDQNILNIAFYNHIYLLPWRFNLQYDNRLLDKYESLAPQRIKGIREQLNEPGIIHFAAN GFVLPPWYVFTPTTRWEKMWWETFVDMQKKHLDFIARTTEDTVHEP >gi|225002527|gb|ACIZ01000052.1| GENE 6 4674 - 5534 315 286 aa, chain - ## HITS:1 COG:no KEGG:LC705_01135 NR:ns ## KEGG: LC705_01135 # Name: not_defined # Def: glycosyl transferase group 8 # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 286 1 286 286 562 100.0 1e-159 MSENAVLFTVTGSHIQLTGTAIASLVLHWPVNIPLRILVMADDYLNQDIFWLKSIPKQLL RPNITVDVWQKPSIMDQVHTANTNTRYPSVVLWRLFAPYIFSDTDRLLYLDNDVLICDDI SPMFDMLPDDKAIGAVNDFQTLLYADTKEGSIWPEIKHFDSYFNSGVLLINTHKYIQAYT QDQLVNTINTSDYSFIDQTILNNLFESQSIHLPLQYNYQKDDEWLNGYALHYNLKQAKKM QAARKKVVIRHFVSEIRSLPWEHGYSRDEFEQNFWRVFSLVKSITR >gi|225002527|gb|ACIZ01000052.1| GENE 7 5873 - 6889 619 338 aa, chain + ## HITS:1 COG:no KEGG:LC705_01136 NR:ns ## KEGG: LC705_01136 # Name: welG # Def: glycosyl transferase galactofuranosyltransferase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 338 1 338 338 697 99.0 0 MEYVISPLQPDTDQATVKAKMDTAYFFGKVGFRELFLSRYVFWNDEHWRSEILGIIATVG KGDIVIYQIPTYAEPSVEKAVVELVHKQGALIIAFVHDVEYLRFPDSYDKGQVLSFFKSF DALIVGTQLVKEKLAADGVNIPMIPSGPWGYRQPIAYRRPSFSKTLHYAGNLVDRKAGFL QNFPENLHIKVYGSADGKTDLPFSLADSVEYLGSYRQEELALALNDGYGLIWDEDKEHHF DPYARINMTHKFSLYLSLGLPVIACNQTAIGRYVSENGLGIAIDSLDNLGNIIEGVTEDD FNRIVDKVANISDLIRSGRHNQMAALQAVLAVKGTLPF >gi|225002527|gb|ACIZ01000052.1| GENE 8 6893 - 7081 79 62 aa, chain - ## HITS:1 COG:no KEGG:LC705_01137 NR:ns ## KEGG: LC705_01137 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 62 1 62 62 80 100.0 1e-14 MKQKRKNLIDKDIAQRVHKENEEITKPSKDHLKISTVVQVTVSVLLAIMVLFGIVYSLFQ IF >gi|225002527|gb|ACIZ01000052.1| GENE 9 7155 - 10226 2326 1023 aa, chain + ## HITS:1 COG:SP1759 KEGG:ns NR:ns ## COG: SP1759 COG0653 # Protein_GI_number: 15901590 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pneumoniae TIGR4 # 12 658 12 661 790 621 49.0 1e-177 MNFWGSSYRYHKKAKKIIKLQETYRAMGDEELRQQTELFRQRLAKGESLRSLLVEAYAVV CEADFRVLHMRPFPVQVLGAVAMEYNNIVEMKTGEGKTLTATMPMYLHGLTGAGNFLITA NGYLANRDAEQMGQVYRWLGLTVASGVAQPGHESEKRDRQRIYQADIVYTTNSALGFDYL FDNLAANPEEQYINHLNYALLDEADAILLDSAQTPLIIAGIPRVQSNYYQSADRMINMLK EKVDYKRSDDRKSVWFTPDGIKRMQHFFGVDDLLGDEWHELYRHLVLALKAHFIYKRDRD YVVDDDMVVLVDRDNGRELIGMKMQSGQHQAIEAKEHVKLTDEMRTMASVTYQNLFRMFG QLAGMTGTAATDAAEFMEVYRLAVYRVPTNEPMIRKDLPDQLYISQTAKLLASLKTVHKA YDEKRPILIETGSLSLSILYSRLLLREKIPHSLLNARSAAKEAKIVAEAGQLGAVTVATS MAGRGTDIKLGKGVKEKGGLLVLGTERMANRRVDNQLRGRAGRQGEPGSSIFYTSLEDRI VIQNAPKRVQKYAYKHSHDKHQQLSRHGRFHRVIDEAQNRVSNAGRSARFSTLQYGEVFR AQRDCVYATRDKVMVASSLERVIKGVFKRVAEDFVKDHVKDHRNGDISDFLDFVYTNIDR DYLPQMLEDHPNQWQDPTTVLWGQSIGLNAHLTPTNSTASVAWGTNAASGVGAFTNVNGR ITSFKTEAPSGNTNAALQTNNGTPVTFTATATNDDKTTVSGKVQATIGGLNPLTVQRGTS FSVKPAALDGVTYPSKPTFKWHLYKDQKGSQDYSPVAGEQITNNTDTLNWQNIQAAAGTL YYQLEVEFDSGQKSYWYSNIAPLTITASAPQLHAVPNLQFALSSGANPSIADFYAAQGVT MVYQPSTIANQTNWDGNNHGALAIAGGGSTWSLNVQFSPFKNQTTQHYLSTETGGSAAVT LHFADGTAVQAKDNRQPVTVYSKVTKDVTTTTATTTSLQVPQTSTIQPGTYQSTATWTLV KAP >gi|225002527|gb|ACIZ01000052.1| GENE 10 10303 - 11769 1044 488 aa, chain - ## HITS:1 COG:CAC1405 KEGG:ns NR:ns ## COG: CAC1405 COG2723 # Protein_GI_number: 15894684 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 5 482 2 469 473 536 52.0 1e-152 MSICQFPENFLWGGATAANQLEGAYNVDGKGLATSDLLLGGTHNVPRQLTREVRPDAFYP SHEAIDHFHRYQEDIALFAEMGFKVYRFSIAWTRIYPTGSASDGPSKEGLAFYAALIAEL KRYNIEPLVTISHFESPIALTKAFNGWASRDMIEEYVTFAQTVIANFHNDVHYWLTFNEI NMLTRPMGAYLAGGMYVDDTNRFISPDIDSTQMRLQALHHQFVASARVCSFAHGFDPNLK IGCMLAYRMLYPLTSHPEDIALVQTATELNNFYCGDVQVKGRYPYFAKRYWRDHNIIMDM EPWEEELLKRGTVDFFALSYYQSSTMATTESGETSGGNFFAGVKNPYLQRSAWGWEIDPR GLRTALNQIYDRYQVPVMVVENGFGARDELIEQDGQKTVNDTARISYLRAHVAAMYDAIQ DGVDLIGYTSWAPIDLISASTGEMAKRYGYIYVDKHDDGSGTLKRYRKRSFYWYQQVIRQ NGLSESDA >gi|225002527|gb|ACIZ01000052.1| GENE 11 11784 - 13619 1298 611 aa, chain - ## HITS:1 COG:SPy0572_2 KEGG:ns NR:ns ## COG: SPy0572_2 COG1263 # Protein_GI_number: 15674662 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 99 441 12 360 364 255 42.0 2e-67 MSDPAKIATQIMAAVGGIQNVKSLTHCATRLRFTLRDKQQFNQAQLEKMPEVLSTVVAGD ESQVVIGANVTKYYAAIQQQYQLHEAGEPNQPTPTQEKNLIKRILNAIVSIMAPIITVLI AGGMFKVVIAILALVGLNPKSTAYLTLSFMADAAFYFLPFMLAVSAAKKFNTNTYLAMMM AGVLLHPNFTALVAAGKPIALFGAPIRLASYGGSVIPIILIVWFMSYVERFAEKVAPNMI KTMLKPLLVALITAPIALIVIGPIGSLLGDGLYTAVTFINQHTPWLVPTLVGAFTPLLVM VGMHVSLLPLATLSMTKFGSETIMGPGMLASNIAQAGAAAAIAVREKQTRGRQIALSASV TALSGITEPALYGVTLKYKHALTCVVVSGGLAGLFAGLTGLVRYSFGSPGIFTLPVFIGA NPTNFRNALLTVAIAFGATFLSTYFFATVATNASTSAKTHPQPFQSVVAGEMIPLARVQD EVFAAGTLGHGVAIIPESGTIVAPADATVSMLYPTNHAIGLTTASGQEVLIHIGIDTVRL DGRFFKPLVSQGESVKVGQPLIKIDLPLIEKSGFDPTVIVLLPNTPPERIEVHEKASVRP GDKLFSFIPET >gi|225002527|gb|ACIZ01000052.1| GENE 12 14064 - 16712 1821 882 aa, chain - ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 6 855 5 861 883 236 26.0 1e-61 MSRSNKQSTWPLLFISFGVTFVISLIVFAALKMAPFGSSSILANDSAVQYVDFFTYLKHA LLGTAGKAYSFSNSLGGGMYANWTYYLLSPFNLVFVLVPRSALPVAVLFVTALKYSTAAM AAQALANYLTGGRWYSFVFSISYGLSGFLVANFLNIMWMDGVILLPLVVLGIERLFDEQR LLPYVIPLSLAFITNYYIGFMVAIFAALYFGWHWAIQHQPQLLRKISLFVIGSLLSGMIA AVVLIPTYYALSASRLSSAGADFSFKALYSLIDLPSKLLPGSFNFDQLSNGLPNLYMGMI GLLGASFYFLARTIPVRERLISAGMTLLLILSIWLNPLAIIWQGFRAPVWYLYRHSFIVI FWFLLLSLRGLMQLRAVSRLRLLLTSLVIGGLLIIPAALRMGTHKYVTLPHLILAGILLL TAAVLLYSYATRLFPVKWTVGALLTLLVIDLGANAYASLDAISFISKADFTVTSKVLSAA YNDAKKIGPSGFYRINADTQRSMDDPYQYNFNGISTFSSVLNTSTINTLTNVGAIGSAGR VKNNDLTWPLESLLGVKQLLLLNTTSKKVGTSEYQQASSRNIFNARYDLPAYKLVGHNQL FNIYENPDALPVATQIFSKIPTQVQANPVLQQNAYFATLTNQQTAPIFTTSDFSGISVDN VKPLTTLTNAVATKVNKKLGASITLSVNPSSEQQYLVMGEGMRKDMTISINNIPLKNDPD NGSKTVSLPLNATKPTTVTLTFNRGFSQIDLDHFALYTLNRQAFKQTVKTAKTNAPKQII QNGRLSLTTQKNNSGYIMLTIPYEKGWQADTQSVKIQNYRGFIGIKVPKKATTFTLTYHT PGIPLGWLVTIMGLIGLAALILYEYHPRFRKRMMTGSQPKSR >gi|225002527|gb|ACIZ01000052.1| GENE 13 17072 - 18799 1344 575 aa, chain + ## HITS:1 COG:no KEGG:LC705_01143 NR:ns ## KEGG: LC705_01143 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 575 1 575 575 1055 100.0 0 MRADTEDSGLVSQLKANAIWLLPLLAIILVLLVQWPQLHLTYIFHQDDTMPQLRRMESYV TSVRHGSYFPKVFPEEVRNFGYAFDAFYPSLLLLPYVWLRLAGMGIVSAYYGYQTLILVA TVVTAYVSFLRIRRQPLAGFVFSLVYTTAVYRALDAFVRGALGENLAFIFLPVIAAGMYE IYAKQSRNWFLLAFGVTGLMYAHMLSLVMVLVFLVGGFLVLVALQRVTWRMVRYTAMAAV SALLMGLGSYLPMVELSRHLSLKLADSATIWPNYLQFNLGDLVTNSLSMYASTSSMQNVS QAFRPGIGVLMLVTAIALAIFWVKLSRAVKVAAGLGFIGIFLSTDLFPWALFSKTVLGTI QFPWRYLELVTLFFSLALGLLVADRSQPQPLALGLVLATCIVGFSYAVNINTTMINANTY RITDKNAVSYYQDSTGGGSEYAPREFDMTTFFKKNHQTVLASHNLEHVTTPTQNYNDMQF SYTSRRAVTLRLPKFAYVGYTVTVDGRPTAYHPSGKLDRITLHAPAGTHHVRVVYTGTVL QHVTGWISLVAAFVFFAWWIVVHARRQRDVDDALV >gi|225002527|gb|ACIZ01000052.1| GENE 14 18972 - 19670 610 232 aa, chain + ## HITS:1 COG:no KEGG:LC705_01144 NR:ns ## KEGG: LC705_01144 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 156 1 156 173 290 99.0 2e-77 MFSEEIRGDVEVFEDKYKMSDAEEKLLFEKNLPSMIYLAGKYENLSTTLLDTKAIINNLT ISGVKPDDVEVVLNLKAAYKYIVGLPQTIQFGIEQIQKINLIIQGAGTPDAGKFRTKTVL VGLTNEDYVPAIPNEANVTKNLEALLTSQKSATEKAILLMLTLSRQQIFTNGNKRTAIVA ANALMYQAKVGLLAVPEKKMHWYLSQLAKYYKTGRADQLKRWLYEHAVFGIE >gi|225002527|gb|ACIZ01000052.1| GENE 15 19783 - 20712 771 309 aa, chain - ## HITS:1 COG:SPy0510 KEGG:ns NR:ns ## COG: SPy0510 COG0463 # Protein_GI_number: 15674614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 5 307 4 306 308 325 48.0 5e-89 MPQSVAIIIPCHNETENVPLIYQALIKTFRESLPQLQPQIWYVNDGSTDDTLDQIKQLQA KDDQVHYIDLSRSFGKEAAMYAGLSTAKADYYAVMDADLQDPPSMLPDMYAILQEGYDMA GAQRVDRSGEAHLRSFFSDMFYKFINKVSQTQIVPGARDFRLMTRQVVEAIVQMTERNRF SKGLFSWVGFKTKYLPYRNIERQHGQTSWSFPNLLRYATDGIIDFSDAPLTFVSIVGITS FIGAFIALIFIVVRAALFGDPTSGWPSMVSIFLMIGGLQLFALGIVGRYIGRIYLETKRR PIFIAREIK >gi|225002527|gb|ACIZ01000052.1| GENE 16 20779 - 21423 516 214 aa, chain - ## HITS:1 COG:no KEGG:LGG_01070 NR:ns ## KEGG: LGG_01070 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 214 1 214 214 327 100.0 2e-88 MKKILIWLAGLALLIAGCSATLNPKQQLKTTTATVQTQVQKEQAALKIIGDSVGAFPSTF EKAYQDHPDTDFRNDDGPVKKLLAKRAAAFKQLEAANTALVNANNTLTKLNNQPTDDTPQ TQVNKVLTSLKLAKLDHKTLVSYYREMQTAEDAFFDNTADSEETSQADLETQISQLNQYY SSLNQQIDVMTANLTTVSSQADSLAKAVKTMHDD >gi|225002527|gb|ACIZ01000052.1| GENE 17 21534 - 21638 87 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRQQVLFKDHDKVVGQWKVYVTTAAANGKITDI >gi|225002527|gb|ACIZ01000052.1| GENE 18 21730 - 22695 768 321 aa, chain + ## HITS:1 COG:lin1983 KEGG:ns NR:ns ## COG: lin1983 COG4129 # Protein_GI_number: 16801049 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 313 1 312 327 244 43.0 1e-64 MHIGMRTIKTAVGTAAAMLIAYSLHLEYWAAAGIITILSVQNTTKASFRLVAYRLLATLL GFVIAIGAFLILGYNAFAFGVFLVIFIPITNVFAVQSGIVMTAVLVTHFMMARSCSWFWI KNELLLLAIGAGVALIANLFMPSLEAKIMGFQKQVEAEMREIIDHMSQQLGTDQLKSADN WANLSDLKMTLDAAVAWANRHSDNQLLSENDYYQAYFEMRANQYELLRQMQDSLDRIETP VMQAAVISDALAMTASVLNEDNPAAQLVTMVKKIQRDFAASPLPTDRASFESRARLFYFL EDFSRLLQLKRNFNHIISSQN Prediction of potential genes in microbial genomes Time: Wed May 25 19:46:52 2011 Seq name: gi|225002526|gb|ACIZ01000053.1| Lactobacillus rhamnosus LMS2-1 contig00056, whole genome shotgun sequence Length of sequence - 53794 bp Number of predicted genes - 62, with homology - 56 Number of transcription units - 33, operones - 15 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 30 - 89 4.5 1 1 Tu 1 . + CDS 199 - 399 352 ## COG1278 Cold shock proteins + Term 421 - 468 10.5 + Prom 405 - 464 8.4 2 2 Tu 1 . + CDS 620 - 862 306 ## LC705_01150 hypothetical protein + Term 956 - 1017 -0.6 + Prom 999 - 1058 6.4 3 3 Op 1 . + CDS 1085 - 1585 432 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 4 3 Op 2 . + CDS 1591 - 2226 599 ## COG1705 Muramidase (flagellum-specific) + Term 2248 - 2310 5.2 + Prom 2330 - 2389 6.2 5 4 Op 1 7/0.000 + CDS 2417 - 2995 550 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 6 4 Op 2 . + CDS 3004 - 4332 421 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 7 4 Op 3 3/0.000 + CDS 4353 - 5462 1085 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 8 4 Op 4 . + CDS 5565 - 6860 1518 ## COG0015 Adenylosuccinate lyase + Term 6889 - 6940 11.2 - Term 7011 - 7045 1.2 9 5 Op 1 . - CDS 7046 - 7615 423 ## LGG_01080 ABC family transporter 10 5 Op 2 . - CDS 7625 - 8371 410 ## LC705_01158 hypothetical protein - Prom 8394 - 8453 2.1 11 5 Op 3 . - CDS 8456 - 10714 1647 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 10740 - 10799 2.3 + Prom 11105 - 11164 3.2 12 6 Tu 1 . + CDS 11195 - 11860 468 ## COG4767 Glycopeptide antibiotics resistance protein + Prom 11912 - 11971 6.0 13 7 Tu 1 . + CDS 12140 - 12997 801 ## COG4975 Putative glucose uptake permease + Term 13112 - 13153 2.7 + Prom 12999 - 13058 4.3 14 8 Op 1 . + CDS 13194 - 14534 1566 ## COG0166 Glucose-6-phosphate isomerase 15 8 Op 2 . + CDS 14586 - 14717 62 ## 16 9 Op 1 . - CDS 14721 - 14852 73 ## gi|229551936|ref|ZP_04440661.1| hypothetical protein HMPREF0539_1192 17 9 Op 2 . - CDS 14882 - 15169 273 ## COG1359 Uncharacterized conserved protein - Prom 15263 - 15322 3.8 - Term 15402 - 15441 1.3 18 10 Op 1 . - CDS 15464 - 16315 407 ## LC705_01164 DNA-entry nuclease 19 10 Op 2 . - CDS 16315 - 17058 540 ## LGG_01146 hypothetical protein - Prom 17100 - 17159 2.6 - Term 17142 - 17178 0.2 20 11 Tu 1 . - CDS 17187 - 18350 835 ## LC705_01166 glycosyl transferase group 1 - Prom 18501 - 18560 3.9 21 12 Op 1 . + CDS 18807 - 19724 835 ## COG0673 Predicted dehydrogenases and related proteins 22 12 Op 2 . + CDS 19825 - 20292 390 ## COG0590 Cytosine/adenosine deaminases + Term 20521 - 20574 10.4 + TRNA 20425 - 20496 52.1 # Glu CTC 0 0 + Prom 20960 - 21019 6.2 23 13 Tu 1 . + CDS 21185 - 21391 160 ## LC705_01169 hypothetical protein + Prom 21486 - 21545 3.5 24 14 Op 1 . + CDS 21576 - 21674 68 ## 25 14 Op 2 . + CDS 21693 - 21887 113 ## LGG_01151 hypothetical protein 26 14 Op 3 . + CDS 21838 - 21975 103 ## + Term 22054 - 22096 1.1 + Prom 22129 - 22188 5.7 27 15 Tu 1 . + CDS 22244 - 22438 181 ## LC705_01170 hypothetical protein + Term 22505 - 22556 18.2 + Prom 22947 - 23006 5.1 28 16 Tu 1 . + CDS 23101 - 23256 69 ## LC705_01171 hypothetical protein + Term 23268 - 23295 -0.9 + Prom 23316 - 23375 2.1 29 17 Tu 1 . + CDS 23459 - 23689 206 ## LC705_01172 hypothetical protein + Term 23713 - 23748 1.0 + Prom 23800 - 23859 4.1 30 18 Tu 1 . + CDS 24076 - 24261 139 ## LGG_01154 hypothetical protein + Term 24503 - 24540 4.1 + Prom 24463 - 24522 5.7 31 19 Tu 1 . + CDS 24558 - 24695 186 ## LGG_01155 hypothetical protein + Term 24701 - 24758 12.2 - Term 24665 - 24709 -0.8 32 20 Tu 1 . - CDS 24776 - 25969 876 ## COG0477 Permeases of the major facilitator superfamily 33 21 Op 1 . - CDS 26065 - 26262 98 ## - Term 26348 - 26401 9.1 34 21 Op 2 . - CDS 26402 - 27832 1218 ## COG4690 Dipeptidase - Prom 27975 - 28034 74.2 + TRNA 27959 - 28029 68.2 # Gln CTG 0 0 + Prom 28550 - 28609 3.6 35 22 Tu 1 . + CDS 28794 - 28970 201 ## LC705_01177 hypothetical protein + Term 29104 - 29141 -0.9 36 23 Tu 1 . - CDS 29109 - 29276 70 ## - Prom 29333 - 29392 2.7 - Term 29377 - 29407 0.4 37 24 Op 1 . - CDS 29450 - 29635 101 ## LC705_01178 hypothetical protein 38 24 Op 2 . - CDS 29628 - 29963 343 ## LC705_01179 hypothetical protein - Prom 30005 - 30064 3.3 39 25 Tu 1 . + CDS 30380 - 31138 569 ## COG0406 Fructose-2,6-bisphosphatase + Term 31173 - 31231 9.1 40 26 Tu 1 . - CDS 31234 - 31425 100 ## + Prom 31409 - 31468 5.1 41 27 Op 1 . + CDS 31543 - 32199 640 ## COG1309 Transcriptional regulator 42 27 Op 2 35/0.000 + CDS 32255 - 33985 175 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 43 27 Op 3 . + CDS 33985 - 35868 197 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 + Term 35946 - 35995 17.0 - Term 35934 - 35983 13.2 44 28 Tu 1 . - CDS 35992 - 36750 522 ## LC705_01185 flavoprotein - Prom 36827 - 36886 3.5 + Prom 36785 - 36844 6.9 45 29 Op 1 . + CDS 36993 - 37859 902 ## COG2514 Predicted ring-cleavage extradiol dioxygenase 46 29 Op 2 . + CDS 37893 - 38897 619 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 38904 - 38954 10.6 - Term 38886 - 38944 12.5 47 30 Tu 1 . - CDS 38963 - 40315 929 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 40396 - 40455 4.9 + Prom 40358 - 40417 5.1 48 31 Op 1 3/0.000 + CDS 40443 - 41036 473 ## COG1435 Thymidine kinase 49 31 Op 2 32/0.000 + CDS 41206 - 42285 1133 ## COG0216 Protein chain release factor A 50 31 Op 3 10/0.000 + CDS 42278 - 43108 206 ## PROTEIN SUPPORTED gi|83748821|ref|ZP_00945834.1| Ribosomal protein L3P methyltransferase + Prom 43117 - 43176 2.4 51 31 Op 4 1/0.000 + CDS 43208 - 44230 865 ## COG0009 Putative translation factor (SUA5) + Term 44243 - 44288 8.0 + Prom 44472 - 44531 3.3 52 32 Op 1 5/0.000 + CDS 44646 - 45878 1239 ## COG0112 Glycine/serine hydroxymethyltransferase 53 32 Op 2 . + CDS 45919 - 46548 575 ## COG0035 Uracil phosphoribosyltransferase + Term 46557 - 46590 3.2 + Prom 46551 - 46610 4.1 54 33 Op 1 . + CDS 46669 - 46833 86 ## LGG_01176 hypothetical protein 55 33 Op 2 40/0.000 + CDS 46847 - 47557 541 ## COG0356 F0F1-type ATP synthase, subunit a 56 33 Op 3 37/0.000 + CDS 47580 - 47792 358 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 57 33 Op 4 38/0.000 + CDS 47828 - 48316 623 ## COG0711 F0F1-type ATP synthase, subunit b 58 33 Op 5 41/0.000 + CDS 48303 - 48848 491 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 59 33 Op 6 42/0.000 + CDS 48872 - 50401 1588 ## COG0056 F0F1-type ATP synthase, alpha subunit 60 33 Op 7 42/0.000 + CDS 50413 - 51336 977 ## COG0224 F0F1-type ATP synthase, gamma subunit 61 33 Op 8 42/0.000 + CDS 51597 - 53063 1489 ## COG0055 F0F1-type ATP synthase, beta subunit 62 33 Op 9 . + CDS 53078 - 53509 418 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 53604 - 53661 12.2 Predicted protein(s) >gi|225002526|gb|ACIZ01000053.1| GENE 1 199 - 399 352 66 aa, chain + ## HITS:1 COG:lin1401 KEGG:ns NR:ns ## COG: lin1401 COG1278 # Protein_GI_number: 16800469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 65 1 65 66 94 76.0 6e-20 MEHGTVKWFNAEKGYGFITREDGSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSDRGPQA VNVNKD >gi|225002526|gb|ACIZ01000053.1| GENE 2 620 - 862 306 80 aa, chain + ## HITS:1 COG:no KEGG:LC705_01150 NR:ns ## KEGG: LC705_01150 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 80 1 80 80 159 100.0 3e-38 MTVKTYRLGNSIVVTVPALFNIGENVEYQPIIDENGVISLLPVKHHIFRGNAGYDLRQAM LEENIGDNDIPIGREDAWHE >gi|225002526|gb|ACIZ01000053.1| GENE 3 1085 - 1585 432 166 aa, chain + ## HITS:1 COG:CAC3445 KEGG:ns NR:ns ## COG: CAC3445 COG0454 # Protein_GI_number: 15896686 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 20 156 12 147 147 87 35.0 8e-18 MEGGGHMLRFEEVAPDARLQYLDLLLVGDEDPAMLQRYLGAGTLFAAIDQQVPVGVAMVV AVNATTVELKNLAVTPARRRQGIASGLLRHVSLVYAEKYQDMLVGTGDVDFDNLRFYMRR GFRFDSIRKHFFDEYSQPVYADGLRLQDMIVLRRKLLLTREDKTKE >gi|225002526|gb|ACIZ01000053.1| GENE 4 1591 - 2226 599 211 aa, chain + ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 3 210 4 204 209 165 44.0 7e-41 MAKKRRRFTLKKVPLAAWLVIAFFAVGSMLVVSSYWSQRQAEVSQRQAIVDKKAAEKAKK EAFIKRLVPTAQAMQKQYGVLTSITLSQAILESDWGTSTLAKDYHNLFGIKGTDPATTKV LRTKEYVNDKWITVNGRFRVYSDDAASIRDHALLFVNGTDWNPQQYATVRAAKDYKTAAS ALQTDGYATDPDYPQKLIHLIEAWNLTQYDN >gi|225002526|gb|ACIZ01000053.1| GENE 5 2417 - 2995 550 192 aa, chain + ## HITS:1 COG:lin1998 KEGG:ns NR:ns ## COG: lin1998 COG0503 # Protein_GI_number: 16801064 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 192 1 192 192 210 55.0 1e-54 MKLLEDRIKKDGQVIGTDVLKVDNFLNHQVDPDLMADLGKEVYRRFSNEPITKILTVESS GIAPAIATAMSFHKPLVFARKHKSLTLKDHLYTATVYSFTKKTSNEIAISRKFLSADDNV LIIDDFLANGQAVEGLMDIIDQAGATLSGVGIVIEKTFQKGRKLLDDKHIRVESLARIRA FEDGQVVFEPED >gi|225002526|gb|ACIZ01000053.1| GENE 6 3004 - 4332 421 442 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 3 428 8 426 447 166 27 2e-40 MKNKTISNPKAAALGLQHLLAMYSGSVLVPILIGASLHFTSEQMTYLVSIDIFMCGIATA LQVFGNKYFGIKLPVVLGCAVQAVAPLIMIGQKFNFQTMYGAIIVAGLFVFLIGGAFSKL RFLFPPLVTGSLITVIGLSLIPVAFQNLGGGSTTAKDFGNMTNLFVGAFTVLLILAINVW GRGFLHSIAILVGLIAGTVLGGFLGLVSFQPVIEASWFHVPTPFYFGVPQFEWSSIVTMI LISMTSMVESTGVFFALGDIVGRKIEADDLKRGYRAEGLAVVLGGLFNTFPYTTFSQNVG LVQLSGIKTRKPVIYSAVFLVILGLLPKIGALATIIPAPVLGGAMLVMFGMVAVQGIRML QQVDFENDKNLLVAAISIGLGLGVTVQPHIVQFLPKTIQLLFGSGILMTSLSAVLLNWLF NSPSRHPEMPVDRGLNEQDSDK >gi|225002526|gb|ACIZ01000053.1| GENE 7 4353 - 5462 1085 369 aa, chain + ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 23 363 24 370 374 181 33.0 2e-45 MTQFISPGATIGIIGGGVSAFRMADTASLMGMRTVVLAPTQTDIALEKADIPLVGQADDR EALKELTQLSTVMTFTDENVDGAVLAELATSSQLPSGTDILTVTQDRYLEKVFLDDLNMN ILPYTQVITPSDINEAIDTIGYPALLKPIQKGMGVDQQLLLATPADVDRAKQLLQQRPYI LEAYLQNIKEVAVMVAKADKEIRIGPVIQNYFEHHQLKASSVRADVDPAVIVEIRRIAEK IAKKLDYNGIFSLEFFLAANGTLYVKRVFPGPKLYGHLMQCTRDISEYELHLRAILGWPL PELELAEDGVAIPLRQKDMDAVLTQIQIKPDWRFAFYPTGNELVGEIEIVGDLKAIKDSI NATGHFVIQ >gi|225002526|gb|ACIZ01000053.1| GENE 8 5565 - 6860 1518 431 aa, chain + ## HITS:1 COG:L88187 KEGG:ns NR:ns ## COG: L88187 COG0015 # Protein_GI_number: 15673623 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Lactococcus lactis # 1 428 2 429 431 596 71.0 1e-170 MIPRYSRPEMAAIWSEKNRYAAWLEVEILAAEAWSKLGEIPEADVKALRANAKFDVDRIH EIEAVTHHDVVAFTRDVSESLGEEKKWVHFGLTSTDVVDTAQGYLLKQANQILRADLAVL KASLAKLAKAHKDTVMMGRTHGVHAEPTTFGLVVATWYSELNRDIRRFEDAASDVEAGKI SGAVGTFANTPPAVEAYVTKQLGIRAQEISTQVLPRDLHAHYIQTLGLIATSVERFALQI RHMQRTEVHEVEEHFNKGQKGSSAMPHKRNPIGSENVSGLARVIRGYETPALEDVLLWHE RDISHSSAERIMLPDATGLLDYILHRFTSILDHLDVFPERMKANMNLTHGLIYSQRVMLK LIESGLSREQAYDLVQPKTAIAWDEHRDFRPLLEADPEIMGRLSEADLDDAFDYHYHLKH VDEIFKRVGLA >gi|225002526|gb|ACIZ01000053.1| GENE 9 7046 - 7615 423 189 aa, chain - ## HITS:1 COG:no KEGG:LGG_01080 NR:ns ## KEGG: LGG_01080 # Name: not_defined # Def: ABC family transporter # Organism: L.rhamnosus # Pathway: not_defined # 1 189 1 189 189 372 100.0 1e-102 MLFRSKQLDIYRERLAKLFAPKTIQYLYVPDEEALTALRDQYIKDFINGGLIKQLAFISS RDTGILDYLSVRNNLCINGHTKHTDFLPEWLANTSPVLDQPAATLNTLQRIYLQFYRGLM GKKRYLLLSGHAEIFDPQVTREFLTEANHALQQTESCLLVLTTDQSLLSANPQNAWQQPP VLSLHAVTK >gi|225002526|gb|ACIZ01000053.1| GENE 10 7625 - 8371 410 248 aa, chain - ## HITS:1 COG:no KEGG:LC705_01158 NR:ns ## KEGG: LC705_01158 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 248 1 248 248 440 100.0 1e-122 MHFFERTFSGFRYHRRYYFVMMLLSVAFCLISIMLITSEMIDQSAQSAFLQRLNSFGTQN KQTILLSTQVGQAHIKMMQITQTLLNRVVIINGICWLIGTALLWFLRRSETDALYLVGKS SMSIGLQYAFEAFFSFLISFIISVFLIILFNDQLIQFLTNANRSAFGHLLQEGYRGIDMN HAFQQLFARHLTGFTRETLFYYGGKTDDLTQPAGFLTTLRNGLGVIFVTNLGLVTPLSII RKRLVMPR >gi|225002526|gb|ACIZ01000053.1| GENE 11 8456 - 10714 1647 752 aa, chain - ## HITS:1 COG:SPy0807 KEGG:ns NR:ns ## COG: SPy0807 COG1368 # Protein_GI_number: 15674849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 15 705 26 708 736 585 46.0 1e-166 MKRLRLNQLLQWVRNTRIGFLALLLFLLWAKTIFGYFVDFSLGLNDPLQYTLLILNPLGT GIILLSLGLYPKHARRGYAIGLIVYILSTLLLLANVLYYREFTDFLTVTTILGVSKVSQG LGASSLSMVKPHDLIYILDIVIVILAYLGYSIWNIWRYIHNQRLKWPHFGLSLDTSRLPF HLPQAVTVFGIAFFALMTAVSEMNRPQLLTRTFDRNYIVKYLGLAPFTIYDAAKTAQNNQ VRAQADSANLDPVLQYTRSHYAAPNASYYGAAKGKNVIIIHLESFQQFLIGQKIDGQEVT PFLNSLIKEKDTLSFNNFFHQVGLGKTSDAENMLETSTFGIANGSLFSSLGTENTFEGAP AILNQRAGYTSAVFHGGSASFWNRDNVYKSLGYNNYFSGNFYNHDEKAATEYGIKDKLML AETPKYLEHLQQPFYTKIITTSNHNPFYITQADSDFPDAGTDDATINGYFKTAHYLDEAL REFFNYLKASGLEKNSLVMLYGDHFGISNDRNTTLAPLLGKDASDWNGFDDAQLQRVPLI FHMPGLKGGVNNTYGGEIDVLPTLLHLLGISSKRYVQFGTDLLSNQHDNVVAFRNHNFVT PKYTVLGSKVYDNTTGKLVTMTPALQATIDKDQKSVDTRLSLSDDVANRNLLRFYVPLGF KPINPSQYDYNQSLSNVLSIEHGRGSKSTSLYSENNDQSTTGLYQTDAPELADDTSPITD FPEKVQNQTDSSASSSASSSSSTLNIKNNQLK >gi|225002526|gb|ACIZ01000053.1| GENE 12 11195 - 11860 468 221 aa, chain + ## HITS:1 COG:CAC0829 KEGG:ns NR:ns ## COG: CAC0829 COG4767 # Protein_GI_number: 15894116 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Clostridium acetobutylicum # 85 212 16 144 308 65 28.0 6e-11 MQRLWVSRVVFATMATGGIAMLFLGPFYNWINSTSLSQVNHFPLVRLIIFSLDKTILYLL VFAVLRCLWLVRHHRRTTFGRELKLGLFVGYLMLLFALTVFRDVYYPWQLVFHWQRSLSV INLHPMVETLKLRQAASHFDLWYQSLGNVAWFMPLGFGIPWVSVHRRRLFAVVGIGLITS LSIETLQFLLISGVADIDDVIFNVIGAILGYAFYRLLHPKG >gi|225002526|gb|ACIZ01000053.1| GENE 13 12140 - 12997 801 285 aa, chain + ## HITS:1 COG:BS_ycxE KEGG:ns NR:ns ## COG: BS_ycxE COG4975 # Protein_GI_number: 16077460 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Bacillus subtilis # 13 283 13 284 287 212 45.0 8e-55 MVFLLALIPALAWGSIGLVSGKLGGNAYQQTLGMTFGALVFGVGTLLIMHPVLDTKTWLL GIISGLFWALGQGQQFQSMKYMGVSMTMPISTGMQLIATTLAGALLFHEWHSGRDVLLGI LALALLIIGATLTSRREQNDDFTSETGVAKGLRTLLISTAGYAGYTIIVNAGQLGALAVV MPQSLGMIIGALLMSIGHEPFAKATAKNVLTGLLWGTGNVFMLLSMANVGLAVSYSLSQM GIVISTFGSIYLLGEHKTRKEMIWVSCGSALVILGGVVLGIMKAK >gi|225002526|gb|ACIZ01000053.1| GENE 14 13194 - 14534 1566 446 aa, chain + ## HITS:1 COG:SP2070 KEGG:ns NR:ns ## COG: SP2070 COG0166 # Protein_GI_number: 15901889 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 446 1 449 449 596 66.0 1e-170 MSYIKFDSSKLDKFVHANELEQMQPLVTAADKELREGTGAGKDFRGFLDLPVNYDKDEFA RIKAAAKKIQGNSQVFVAIGIGGSYLGARMAVDFLSQTFRNLDPELKFPEVYFAGNSISG TYLADLLDIIGDRDFSINVISKSGTTTEPSIAFRILKAKLIEKYGKDGAKERIYATTDRA KGALKQEADAEGYEEFVVPDDVGGRFSVMSAVGLLPIAVAGGDIDEMMRGLGDGRKAYAS ADLKENEAYQYAALRNILYRKGYTTELLENYEPTLQYLGEWWKQLMGESEGKDQKGIYPS SANFSTDLHSLGQYIQEGLRNLMETVVWVEEPNRDLTIPDDAQNLDGLGYLAGKKMSFVN RKAYEGVVLAHTDGGVPVMTVSIPKQDAYTLGYLIYFFEAAVSISGYLNGINPFNQPGVE AYKKNMFALLGRPGYEDMTKELNARL >gi|225002526|gb|ACIZ01000053.1| GENE 15 14586 - 14717 62 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLERSVAELWLSVRSYQLVLGLFLWASVRAAFEFVAPQELKQR >gi|225002526|gb|ACIZ01000053.1| GENE 16 14721 - 14852 73 43 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229551936|ref|ZP_04440661.1| ## NR: gi|229551936|ref|ZP_04440661.1| hypothetical protein HMPREF0539_1192 [Lactobacillus rhamnosus LMS2-1] # 1 43 1 43 43 76 100.0 5e-13 MKIRYLIIYNDVENALPEKARNLARQYGTELKPWSQKQLIALV >gi|225002526|gb|ACIZ01000053.1| GENE 17 14882 - 15169 273 95 aa, chain - ## HITS:1 COG:BS_ycnE KEGG:ns NR:ns ## COG: BS_ycnE COG1359 # Protein_GI_number: 16077455 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 94 1 94 95 71 37.0 4e-13 MKIINVTLHVKPELASDYQQFISQLVAGSRAEAGNLSYDHFQSLTDPNKYEIIEHWQDAQ AVASHNETSHFKQFLAGIDSFLDAPLEIIRMDYSA >gi|225002526|gb|ACIZ01000053.1| GENE 18 15464 - 16315 407 283 aa, chain - ## HITS:1 COG:no KEGG:LC705_01164 NR:ns ## KEGG: LC705_01164 # Name: laaO # Def: DNA-entry nuclease # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 283 1 283 283 499 100.0 1e-140 MKTKLMKYLTPLLIVSLLLTGCSTQGTSKSTSPSTDPVADQTKLNNKTNSAISSLDEAIA DKREEVSSLKATLDNSKPSTEASKTTAGTTDANTLANLDYTGQQEITVNNNDPAFSKNDL STAKGAWATYSDLDSLNRVTDANALLNRSLMPSAKREPLTWNPTGWHNKKTAHGWLYNRS HLIGYQLTGENNNPKNLMTGTQTLNSPLMLAHEMDIAYYLKQSNDHYVRYEVKPIFRGNE LVARGVQMRAQSIGDNTIHFNVYIFNVEPGYTINYADGTSTKN >gi|225002526|gb|ACIZ01000053.1| GENE 19 16315 - 17058 540 247 aa, chain - ## HITS:1 COG:no KEGG:LGG_01146 NR:ns ## KEGG: LGG_01146 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 247 1 247 247 248 96.0 2e-64 MATLGDFLILLGLGGTIWGAVRLFRQRKHPSTKRLNLILLIGGIILMFIGTPISDTKTST VSTLQSSVVNKRLTAKQRKLLNAEKTHGKVLLAVKAKKNAELKALTKEQKKLEAAADERA SSSRAAAASSSIAASTSASQAESASKAAAASIQAAASSQAAANAAAAKQAEEAQKSAAQQ QAAPAQQQTPTNQGDLYTGTQGTIVGNSRSKIYHVPGQAGYHMNAANAVYFHTEAEASSA GYRKALR >gi|225002526|gb|ACIZ01000053.1| GENE 20 17187 - 18350 835 387 aa, chain - ## HITS:1 COG:no KEGG:LC705_01166 NR:ns ## KEGG: LC705_01166 # Name: not_defined # Def: glycosyl transferase group 1 # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 387 1 387 387 807 100.0 0 MKPAKTKFSDAPDGSIHQYDQILKYFNDRPADQTKPRGNRITFVTTGIIGFDGGQTTMLH LGTLLANAGYDVYYLSYVPQSQDEMIQNAEFNYPGYKGTCLPMGELESHRSDIWVATLWE SVYVIKNKPGYKMYFVQDYEPYFYPYGDRYQMARRTYSLGLHMVSLGPWCAHMITTHCKT NSPIDIINFPVDVARYPFKERDPKPYQDKKQIKLAVYTKWSSPRRAPVTIQIVLENCRHL LRAKGIDLKITYFGTGRSKRFINGQNLGKLPPSELNQLYHEADFGIAPSMTNFSLVPYEM MSAGLPLIDFKEGTGSYFLKDGTYFSCHLDERDLAKTLQTACEKPEIITQNIEKAQAYLK TISWERTEKDMLAIIASLYADVDVVKS >gi|225002526|gb|ACIZ01000053.1| GENE 21 18807 - 19724 835 305 aa, chain + ## HITS:1 COG:SPy2107 KEGG:ns NR:ns ## COG: SPy2107 COG0673 # Protein_GI_number: 15675859 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Streptococcus pyogenes M1 GAS # 1 301 1 296 311 184 35.0 1e-46 MLTIGVIGLGTIAQKAYLPVYAQMQNQVHWLLNTRNEDKLEQLSAQYGLESAGHSLQDLD GQPLEAVMIHTPTATHYQYVKHFLEKGVHVFVDKPLATDMAQVNELYDLADAKHVMLTVG FNRRFAPMIQDLAQVTDKTGVRVDKNRIDALDDTEHALWDLFIHPVDTALMLAGYPEKPN TRYALHTTSDGQLQQASVTFTAPGIRGEAGIDLQAGTNLEEAQVAAPSGVQRVQNLDQLV VYGRGGASQTFAPDWQPMLETRGFAPMVQAFVQAVGNPDGQNPVSPATSQLAHAVVADLV NQINN >gi|225002526|gb|ACIZ01000053.1| GENE 22 19825 - 20292 390 155 aa, chain + ## HITS:1 COG:MA3407 KEGG:ns NR:ns ## COG: MA3407 COG0590 # Protein_GI_number: 20092219 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Methanosarcina acetivorans str.C2A # 6 154 13 160 162 136 44.0 2e-32 MYQKSFMAMADEEAKANVNGSDGGPFGCVIVKNGQVVSRAHNRVLVDHDPTAHGEITAIR KAGQALGTHDLSGCELYTSAMPCPMCLSAIIWANIKQVYYGNTADDAAAIGFRDAAIYDF INAGLKGEMLKLSQHDRNLTIGAFKAYQSAQKELY >gi|225002526|gb|ACIZ01000053.1| GENE 23 21185 - 21391 160 68 aa, chain + ## HITS:1 COG:no KEGG:LC705_01169 NR:ns ## KEGG: LC705_01169 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 68 2 69 69 84 100.0 9e-16 MSSKKLKDIQKDVPIPVGIVDERPIHPARKLSEEESVQIIADFEQISLEKARKRLSEIRK EIQEDMKR >gi|225002526|gb|ACIZ01000053.1| GENE 24 21576 - 21674 68 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLLLKELESAFRLTYNLSKDYASMILGLLARE >gi|225002526|gb|ACIZ01000053.1| GENE 25 21693 - 21887 113 64 aa, chain + ## HITS:1 COG:no KEGG:LGG_01151 NR:ns ## KEGG: LGG_01151 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 30 63 1 34 64 64 82.0 1e-09 MGFKVKVNSLNRESVLFWDGSLRGDDSKIVALFSQLIRVHIPQVVTLPDGVDYYDDIHNG PNVL >gi|225002526|gb|ACIZ01000053.1| GENE 26 21838 - 21975 103 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALTIMTTYTTDPTSYRAILQTFPDNEILKAPSDDFMGNKKLRVF >gi|225002526|gb|ACIZ01000053.1| GENE 27 22244 - 22438 181 64 aa, chain + ## HITS:1 COG:no KEGG:LC705_01170 NR:ns ## KEGG: LC705_01170 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 64 1 64 64 116 100.0 3e-25 MRRDFVRKSFDYYMSHPAKVDLPLGPQDIVPWKIDFSKEEWQYFDQLLKEADDKLTEWPE TTIG >gi|225002526|gb|ACIZ01000053.1| GENE 28 23101 - 23256 69 51 aa, chain + ## HITS:1 COG:no KEGG:LC705_01171 NR:ns ## KEGG: LC705_01171 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 51 1 51 51 79 100.0 4e-14 MPHPAKIDLPLRPQDIVPWKLDFPKEEWEYFDRLHKEANDKLTEWPAPTAN >gi|225002526|gb|ACIZ01000053.1| GENE 29 23459 - 23689 206 76 aa, chain + ## HITS:1 COG:no KEGG:LC705_01172 NR:ns ## KEGG: LC705_01172 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 76 1 76 76 140 100.0 2e-32 MTEFKDYIIGILKNQREEPNGKFGHQFMRITPYTVILFAWDNTAKQKTQIEIHSKEKKPN EVAWENLYPEYEWVNV >gi|225002526|gb|ACIZ01000053.1| GENE 30 24076 - 24261 139 61 aa, chain + ## HITS:1 COG:no KEGG:LGG_01154 NR:ns ## KEGG: LGG_01154 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 61 1 61 61 98 100.0 6e-20 MVIPPISIIKYVKFESGLPVLTIKHPTARQQADFDQYKRAEVAEEAYKELQLSKVKSRTE R >gi|225002526|gb|ACIZ01000053.1| GENE 31 24558 - 24695 186 45 aa, chain + ## HITS:1 COG:no KEGG:LGG_01155 NR:ns ## KEGG: LGG_01155 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 45 1 45 45 70 100.0 1e-11 MQYRIQLDTKNQLFVAIDAHDQNHFGTGRTIEQAIHQLKATNKAA >gi|225002526|gb|ACIZ01000053.1| GENE 32 24776 - 25969 876 397 aa, chain - ## HITS:1 COG:BS_yttB KEGG:ns NR:ns ## COG: BS_yttB COG0477 # Protein_GI_number: 16080087 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 7 366 5 360 397 218 36.0 2e-56 MQREIRLRWLLTGALLSSIGMSFIWPLTSIYLHNRLHISLTVIGVVLLLNSLGSVIGSIV GGRLYDQSDPFRLTLFGVGLTGIVLIGLTIWHGWPAYCFWLALLGIGSGWNITMVNSLGT SLRSKDGRYVFTMLYFAQNVGVVVGTSLVGFIYDISITLLFLIAVILYVLFFIVVLTKFQ PASKITRTPSKEAMAASPKATLPAANHLMLTTFFFALLVFWLMYQQWSSNLSVYMTGLGI PLRNYSFLWTLNAALIVVIQLFLNWFNEHVNGIRIIYQILFGLVMVAISFLILITARTYP FFVIAMIALTTGEATASPAIPALVNDLTPRAIKGRYQGFVNSWGSVGRALGPLFGGLVID WLNYRSLFIIAAIGVLALVAILTAIWIKTRRDLIRYQ >gi|225002526|gb|ACIZ01000053.1| GENE 33 26065 - 26262 98 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLALMQAGFDCSDPCPPEKVIGHGYKNGFDLLLMLDVRWPYYIGTEHLLVTSRWVDSYPA LTQLV >gi|225002526|gb|ACIZ01000053.1| GENE 34 26402 - 27832 1218 476 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 1 473 1 473 474 352 42.0 8e-97 MKIESACTSILVGKKASIDGSTMIARNDDTFSPLTPQRFYMHAGWKGEKSLHVKSPLNGF EADLPENGYRYNAVPNVENDKLGDYEESGINERNVAMSATESTYGNERALGFDPLVKEGL DEDLIVNMVLPFIESARHGVEYLGQLIKQYGSPAGNSVLFSDKDSVWYMEIVTGHHWVAQ RIPDDAYAIAANQVAIQQVDFDDTDNFAWSEGIQEFVETHHLNTDKEGWNFRHIFGTMNE KDRHYNTPRVWYGHKLLNPEIEADPESAELPFIMRTDHLITREDIAQILGSHYNETPFDP YGHGDDADRFRYRPIGLNRTQNSHILQLRSDVQEGLEAIMWLAIGMPSFSPYVPFYCNAN DTDPSYSKTPKTFDIDADSAYWLHRLLDVLVEAHYTQFIQADRDYLTALNRDYREMIQGF DKGAKELGAKELTQYLTDANYKIVAHTKAATKALINEYVMESLKLSKLTFNMDKNL >gi|225002526|gb|ACIZ01000053.1| GENE 35 28794 - 28970 201 58 aa, chain + ## HITS:1 COG:no KEGG:LC705_01177 NR:ns ## KEGG: LC705_01177 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 58 1 58 58 73 100.0 2e-12 MAENKEKEYMVSDESMARPLTDEQKAHMREIESQPGFKKKRDDLLKRVQKKFGTNKLN >gi|225002526|gb|ACIZ01000053.1| GENE 36 29109 - 29276 70 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPQVKNAFYVHGNSVVEFKPDKTVRIDDYFLVNNQTKTKVIGLLWYRQIRHCHFS >gi|225002526|gb|ACIZ01000053.1| GENE 37 29450 - 29635 101 61 aa, chain - ## HITS:1 COG:no KEGG:LC705_01178 NR:ns ## KEGG: LC705_01178 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 61 1 61 61 79 100.0 5e-14 MNSTVKVVLTRGLRAVLMAFFLFIARAFLTWPWLAFIIVAFLIYACGCFAYAGFLAWVQR L >gi|225002526|gb|ACIZ01000053.1| GENE 38 29628 - 29963 343 111 aa, chain - ## HITS:1 COG:no KEGG:LC705_01179 NR:ns ## KEGG: LC705_01179 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 111 1 111 111 201 100.0 7e-51 MIDAAIMILAYAHDHPQSYQVRQVPYQNVASILLDDQVIFPQQQVFFPPNRLRVIRLPEH FSFDNPDISAWLLSLLPDLGEDVEAPSSDQMWLTTSHLTKAKQLLIEVSFE >gi|225002526|gb|ACIZ01000053.1| GENE 39 30380 - 31138 569 252 aa, chain + ## HITS:1 COG:lin0566 KEGG:ns NR:ns ## COG: lin0566 COG0406 # Protein_GI_number: 16799641 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 5 212 8 218 231 106 31.0 3e-23 MTKRLYLVRHGETPMNVARQLQGITDANLTAKGRDAADRLGELLRPIPFVKAFSSDRERA IETARRIIAGHQPQPALIKLSALREYYFGGLEGDPGNAVMTRTIRRYGLTASWRAWVGSQ RFAGLIRSIRNADPTHQAEDLPDLLVRVRQAFAQIDTQSPDNSDILVVSHGLLLSALIYQ LAPEQLPLGLLKNTSVTRVDVTDKGMRLRGVNLIRESDILALRHDEPQKDDHQNDPQSID QGKESSMLDKFR >gi|225002526|gb|ACIZ01000053.1| GENE 40 31234 - 31425 100 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEVSTFSWTYRDAFPVNFGMIPDSTCSMKVTCSSTLVGNLISEAGLFLNSSLWLYYLDLS PYR >gi|225002526|gb|ACIZ01000053.1| GENE 41 31543 - 32199 640 218 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 115 1 113 189 73 37.0 3e-13 MPKATFFRLPKAKQQRLMDAAYQEFARAPFNEASISNIIKQAGIPRGSYYQYFDDKADLY FYLLENVRQRTVALLQQVMTKHHGDLFAAMSEFFDKVITALTHGPHAALYRNVFLHMDIR SATKMAKSDVPFSKPPHGHGEIHAFLLTSIDRSRLRIQTDDEISLLIRQIVGMFMQTIGY YYSHQAEGKPITVAELKRRSHQLLDWLQFGVASDRQQR >gi|225002526|gb|ACIZ01000053.1| GENE 42 32255 - 33985 175 576 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 348 558 17 229 245 72 26 7e-12 MLKLAKKRMSGLAVIGAILFMIVQVMSNLYLPNLTADIVNNGVAKGDIDYIWATGMKMIL FALLSILASVGNVFLASRTSQKLGQKLRSDVYRKVINYSHDEMDKVGTSSLITRTTNDVT QIQNVWMMILRMMIMAPIMLIGASFLAYQKSHTLTMVFLISLPLLALFLVIIMYFAVPLF KAMQKKTDNINLVFREGLTGVRVIRAFRQDDFEQNRFEGVNQDYTQNAVKVFSIIAAVFP VMTLIMSGTNIGITWWGGHLIAQQALETGNLIAFMTYAMQILMSFMMLSMIFVFIPRAQA SAARLNDVLAQQSRITTPEAPKALDTAHPALAFDHVQFRYHHAEEPALRDIDVQVKGGQT LAIIGGTGSGKTTMVNLIPRFYDVEKGAVRVDGEDVKAVDLKKLHEAVAFVPQKANLFTG SVRDNMKYGNENATDDDIWHALEIAQARDFIEANPEGLDYQVEQGGGNFSGGQRQRLAIA RALVKDASIYVFDDSFSALDFKTDANLRAALKADAKIQTKVVVIVGQRVSTVADADTIVV LDEGKMVGKGTHAELKANNPTYQEIIKSQIREGDEQ >gi|225002526|gb|ACIZ01000053.1| GENE 43 33985 - 35868 197 627 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 389 601 283 502 563 80 28 2e-14 MADNHKAQTTKQPSGPRMGPGRGGLVEKPKNFWGTTARLFGYMRNRLIGIIAVLVLAIAS TVFQIRTPKILGEATTEIFKGVMKGQAEQKAGIAVGNYPIDFDKIKQIILIVLVLYLGSA LFSFLQQFIMTRISQNTVYQLRKDLKHKMKTVPIKYYDTHSNGDIMSRAINDMDNIASTL QQSLTQMVTSAVMFVGTIWMMLTISWKLTLIALVTIPLGLIVVGIVAPKSQRFFAAQQKA LGLLNNQVEETYGGQVIIKSFNREDDEVEAFEGQNQAFYDAAWKAQFVSGIIMPLMIFLN NIGYVFVAIMGGIEVSNGTITLGNVQAFLQYMQQFSQPISQLANLANTIQSTIASAERIF AVLDEEDMQDEPSGVPAVANDPNKLVMDHVQFGYTPDALLLKDYNLQVKPGEMVAIVGPT GAGKTTIINLLERFYDISGGSIRLNGTDTRDMKREDVRAHFAMVLQDTWLFTGTIWDNLK YGREDATDDEVLAAAKAAHVDNFVRQLPDGYNTILNEEASNISQGQRQLLTIARAFVADP EILILDEATSSVDTRTEIHIQHAMNRLLTDRTSFVVAHRLSTIRDADKIIVMNHGSIVET GNHDELMAKNGFYADLYNSQFSGNVAI >gi|225002526|gb|ACIZ01000053.1| GENE 44 35992 - 36750 522 252 aa, chain - ## HITS:1 COG:no KEGG:LC705_01185 NR:ns ## KEGG: LC705_01185 # Name: not_defined # Def: flavoprotein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 252 1 252 252 501 100.0 1e-141 MKILGIYGGQDPDGLTASLVKTILAGVTAPATTEFIDLNQYQLRPDRPGQTNPVLDELEE KLQAADVWILGTPTYFGTVAGQFKQLLDCLRHRITRMTHQGDTLPGKFKDKHYVSVTSCF ATGLDNTFTHQTDATLVTIDKAMTAAGLHKITELVLPHTWGMTALPAAKVKQAQALGAKL ATFKKKDDETLKRYLLLFGMIVVMALATMGIQQLIPGVATNFWWRYVSFVVIFFVLLACL LHYATFMRHKRR >gi|225002526|gb|ACIZ01000053.1| GENE 45 36993 - 37859 902 288 aa, chain + ## HITS:1 COG:lin0649 KEGG:ns NR:ns ## COG: lin0649 COG2514 # Protein_GI_number: 16799724 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Listeria innocua # 4 286 2 279 279 104 28.0 2e-22 MAGIPLPEETRVDFIALKVADLAKVSRWYQDVARLDLLRQNGSTVYLGTRLNQQVLVVLH EISGLTPQEAVTGLDYFAILLPNPGALGAAYRIVKQDQAVTKAFQTNYRQGFLAHDPEGN GVAFTIDRAIEQYQEERQYNWDDEVEQALDPEEIGKHAVRDYDRLPSGTAIGYVQFRVAD LQTTSHYLAQGLGFREKATQVKDEIFLAAGDYRHHIGINLRRDPKLLLPTPDMYGLDYVS FILPDKMTMANILMNLDAAGLTDYDYHHENQFLMIAGPNRLTLWFRVA >gi|225002526|gb|ACIZ01000053.1| GENE 46 37893 - 38897 619 334 aa, chain + ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 10 334 11 319 328 189 35.0 9e-48 MDFQAVTTRLQKWVAERIVPGFSVAMLAGKRVQSKVAGEAQWLPHPEPLRPKMLYDIASL TKVVGTTTVFLQAWDHGLVAPTMPLKQLLAAFPHSTTFQQALTHTSGLEGYIPHRDALPA PALKHALLTQLAVTDEVNRKVVYRDVNLLLVGWALEEVYHQPIQKLVTRQVLRPLDLPRA TFQPEAAQCVPTTYQPLSGLRRGVVHDPKSAILGAHSGAAGLFASLDDLIIFTQYLFGLR TAPAWPKHAQDLTRDWTVHHLGRSLGWDLKHDNQGRLWLYHTGYTGTFWLVQPQSQLALI VLTNRVHPQPNQEFLGRRDQLVHRFLNDQPILDQ >gi|225002526|gb|ACIZ01000053.1| GENE 47 38963 - 40315 929 450 aa, chain - ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 4 446 2 444 449 470 50.0 1e-132 MAFSAKASLATAIGRSSYWFLHTFFKGGSSLPGKLANRLDPHVLQALGHNYDVIVVTGTN GKTLTTSLIVKVLKQKYQEVLTNPTGSNMLQGITTAFLAQPKSGHGRGIAVLEVDEANVA PVAAQLKPKAFVLTNIFRDQMDRYGEFYTTYQKILDGITLDPTAVVLANGDAPIFSSRKL PNPIYYYGFTLTNEGDHKAPPNTDGVLCPVCQHILHYHALTYANLGNFFCPNCGFKRPEL TYQVNAVTKMTPQSSEFVIDGQLCHIDIGGMYNIYNALAAFAVGRTFDVSPEQISQAFAY DEKVFGRQEVIQLGAKKLTLILVKNPVGLNQVLSMIQTAKQPFGFAMLLNANYADGIDTS WIWDGNFEEFVASKKAADYLVGGERYQDIALRLKVAGVPETKLTIKPDLGDVLTTLQEMP QQQLYVLATYTAMLQLRKKLSDGGYIKGGF >gi|225002526|gb|ACIZ01000053.1| GENE 48 40443 - 41036 473 197 aa, chain + ## HITS:1 COG:lin2688 KEGG:ns NR:ns ## COG: lin2688 COG1435 # Protein_GI_number: 16801749 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Listeria innocua # 1 189 1 190 191 290 68.0 1e-78 MAQLFFRYGAMNSGKSIEILKVAHNYEEQNKRVILMTSAVDDRAGVGMIASRIGLERTAI PIAHETNLYDVIKTTDPKAACVLIDEAQFLQKHHIFEAARVVDELHIPVMAFGLKNDFRN ELFEGSKYLLLYADKIEEMKTICWFCAKKAIMNLRIHDGKPVYEGEQVLIGGNESYYPVC RHHYFHPPLDKIDQDEE >gi|225002526|gb|ACIZ01000053.1| GENE 49 41206 - 42285 1133 359 aa, chain + ## HITS:1 COG:L0373 KEGG:ns NR:ns ## COG: L0373 COG0216 # Protein_GI_number: 15672577 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Lactococcus lactis # 4 358 1 356 357 429 63.0 1e-120 MDKIFEQLDGLLVRYEELEELMSDPEVISDTKRYLALSKEEGGMRDVVAAYKKYKQVLSD IKESEEVLRESKDEDMEALAKEDLEDLQKQKADLEEKIKVLMLPKDPNDDKNIIMEIRGA AGGDEASLFAGDLLNMYMHYAERQGWKAEIVDSTPTEVGGYKEVVVMITGDNVYSKLKYE NGAHRVQRVPVTESAGRVHTSTATVGVMPEYDEVDLKIDPKDIRTDVYRSSGAGGQHVNK TSSAVRMTHIPTGIVVSMQDERSQQENRARAMQILRSRVYDYYETENQEKYDQNRKNAIG TGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEIIDALIVHDQAQKMESLNV >gi|225002526|gb|ACIZ01000053.1| GENE 50 42278 - 43108 206 276 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|83748821|ref|ZP_00945834.1| Ribosomal protein L3P methyltransferase [Ralstonia solanacearum UW551] # 49 243 68 269 300 84 28 2e-15 MSKTYAEALKWASLLLTKQKVDPDGARYVLMTRADWTPSQLILHRQDPMPDAAWRQFQAD VARLAHFEPAQYITGQAPFFGTMFAVTPAVLIPRFETEELVAWVAEEQTNAQTGLDMGTG SGAIGLTLARQLPQIDMTLSDVSPSALAVAKQNAAAQKASVHFVTSDLFNHLPGRFDFVV TNLPYIAPEEASVMDQSTLRYEPKLALFADHHGLALFERFVTELPQHLNPHGAVYLEFGY HQEPALRQLFAEKLPQAQATFRRDMAGHPRMVKLQF >gi|225002526|gb|ACIZ01000053.1| GENE 51 43208 - 44230 865 340 aa, chain + ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 12 328 20 340 345 278 48.0 8e-75 MAKRYHESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIV TVADAAMVSQYATITPDAAKLMDTFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDDA LTRKLIATAGVPIVGPSANTSGKPSPTTADHVLHDLADKIAGVLDDGPTRVGVESTIIDL TVTPPAILRPGAIGPHELEPLLGPVDSAAHHVGKNEAPKAPGMKYKHYAPAAQVVVVDTI DQFDDAVAWAKKTGQTFGLLATDSILAHFPDVPSYSLGQDITSATHALFAGLRWFDLHPD VTLVLAQAFSHSELSAAYMNRLLKSAGNMHYQPNMPTDRF >gi|225002526|gb|ACIZ01000053.1| GENE 52 44646 - 45878 1239 410 aa, chain + ## HITS:1 COG:SPy1145 KEGG:ns NR:ns ## COG: SPy1145 COG0112 # Protein_GI_number: 15675122 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Streptococcus pyogenes M1 GAS # 7 409 12 415 418 530 67.0 1e-150 MDLMAHDPEVFRAIHEEEARQEHNIELIASENIVSPAVRAAQGSVLTNKYSEGYPGHRYY GGNQYIDVVENLAIERAKKLFGAEFANVQPHSGSQANMAAYRAFLEDGDKVLAMDLTDGG HLTHGSPVSFSGQEYHFYHYGLDPKTERLDYAKIREQAEQVKPRLIVAGASAYSREIDFK KFREIADHVGAFLMVDMAHIAGLVAAGLHMNPVPYSDVVTTTTHKTLRGPRGGMILAKAE YGKAINSALFPGIQGGPLDHVVAAKAVALGEALQPAFKTYAQQIIDNMHAMVAGFKEDEH LRLISGGSDNHMVLVDVTGYGVNGRQVQDLLDEVDITTNKNQIPGEQNGPFKTSGIRVGT AAITTRGFTPEESKRVAELISMAIAHRDEQPVLDQIRQEVLALTARHPLS >gi|225002526|gb|ACIZ01000053.1| GENE 53 45919 - 46548 575 209 aa, chain + ## HITS:1 COG:SPy0392 KEGG:ns NR:ns ## COG: SPy0392 COG0035 # Protein_GI_number: 15674535 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 209 1 209 209 303 69.0 2e-82 MGKFTVLNHPLIQHKLTLIRDKHAGTKEFREIANEIAELMVYEITRDLPLESIEIETPMG KTVQKQLAGKKLAVIPILRAGLGMVDGVLRLIPAAKVGHIGMYRDEKTLKPHEYFVKMPP DIDQRDLIIVDPMLATGGSANMAIEALKKRGATSMRLVVLVAAPEGVKAVQAANPDVDIY AAALDDHLNKNGYIVPGLGDAGDRLFGTK >gi|225002526|gb|ACIZ01000053.1| GENE 54 46669 - 46833 86 54 aa, chain + ## HITS:1 COG:no KEGG:LGG_01176 NR:ns ## KEGG: LGG_01176 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 54 1 54 54 93 100.0 2e-18 MAAKVSAFLALSFHRNGVRVMIVFQGYTLVSTIIEVSVILHHRFDDTYDMTPLQ >gi|225002526|gb|ACIZ01000053.1| GENE 55 46847 - 47557 541 236 aa, chain + ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 1 236 1 237 238 206 46.0 4e-53 MNEQYPSIKLFGLNFNLTNDIGVLVSAILVFLLVFWLSRNLQMRPGAKQNILEWIMNFTN GIVKGAIPGSQRYTFNLFAFTLFLFIFISNQIGLFLELDIGKDTWFRSPTASPVITMTLA MTVLVISHYFGIVFKGFKGYLKGYVSPIGILLPINLLEEFTNFITLSLRLYGNIFAGEVL VLLIRQLAFSGGAFSFVSGFLLEIVWQGFSVFIGSIQAYVFVTLGMVYTSHKVVSE >gi|225002526|gb|ACIZ01000053.1| GENE 56 47580 - 47792 358 70 aa, chain + ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 1 66 1 66 70 62 68.0 3e-10 MQFIAASIAAGIAALGASIGNGMVISKTLEGMARQPEMAGTLRGTMFIGVGLIEAVPIIS VVIAFMLMLR >gi|225002526|gb|ACIZ01000053.1| GENE 57 47828 - 48316 623 162 aa, chain + ## HITS:1 COG:lin2677 KEGG:ns NR:ns ## COG: lin2677 COG0711 # Protein_GI_number: 16801738 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Listeria innocua # 2 157 13 168 170 109 39.0 2e-24 MSLGDTLFTLVTFLVLMIAVGKVAWKPVSKMMAERQQKISGDLDYAEKSRKDAEALAAKR REALQHSQADAVKIVNQAKENGEKQRQSLVDAANTEVATLKKNAQADIDQARKDALASAK NDVADLSLAIAQKLIGKELNADDQKDLIDDYIKRLGDANGSH >gi|225002526|gb|ACIZ01000053.1| GENE 58 48303 - 48848 491 181 aa, chain + ## HITS:1 COG:L10679 KEGG:ns NR:ns ## COG: L10679 COG0712 # Protein_GI_number: 15673749 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Lactococcus lactis # 11 179 8 175 175 77 27.0 9e-15 MAVTNQMVAPRYAKALLEAAHDQNQVETVHEELQALASVFKENPTILTIFDNARISAADK ANLLTTLTKDASPLVANLLKLTQQYGRFGALPAIITTFNRAYDDEAGIIAATVTTAVALS ADQADALRSSIAARFGMKSTQLKQIVDPSVIGGVRIQARGSVIDGTVKHRFEKMKAALLA D >gi|225002526|gb|ACIZ01000053.1| GENE 59 48872 - 50401 1588 509 aa, chain + ## HITS:1 COG:lin2675 KEGG:ns NR:ns ## COG: lin2675 COG0056 # Protein_GI_number: 16801736 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Listeria innocua # 1 503 1 503 504 767 76.0 0 MSIKTEEISSLIKKQLEGYQDDLAAEEVGTVTYIGDGIARATGLENAMANELLQFSNGSY GMALNLETNDVGIIILGDFDEIREGDQVKRTGRIMEVPVGEAMIGRVVNSLGQPVDGLGT IKTDKTRPIEFKAPGVMQRQSVSEPLQTGLKAIDALVPIGRGQRELIIGDRKTGKTSIAI DTILNQKDQNMICVYVAIGQKDSTVRAQVETLKKYGAMDYTIVLTAGPSEPAPMLYIAPY AGAAMGEEFMYNGKHVLIVYDDLSKQATSYRELSLLLRRPPGREAYPGDIFYTHSRLLER AAKLSDKLGGGSMTALPVIETQAGDISAYIPTNVISITDGQIFLQSDLFYAGTRPAIDAG ASVSRVGGDAQVKAMKKVAGTLRLDLASFRELEAFTQFGSDLDAATQAKLNRGRRTVEVL KQPVHKPLPVEKQVLILYALTHGFLDPIPIEDIGRFQDEMFDFFDSNAADLLKQIRDTGN LPDTDKLDAQIKAFAGGFQTSKQLAAAKG >gi|225002526|gb|ACIZ01000053.1| GENE 60 50413 - 51336 977 307 aa, chain + ## HITS:1 COG:SP1509 KEGG:ns NR:ns ## COG: SP1509 COG0224 # Protein_GI_number: 15901356 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 307 1 292 292 306 55.0 4e-83 MAESLMDIKRKIASTKKTGQITQAMQMVSGAKLSQIEKRAKKYQIYSDKVRQIVTHLAAG QLLELATAANDDTETDKNQVISVASLLQKRPVKKTGYLVITSDRGLVGSYNSTVLKAMMQ MIKDDHESPDDYVMMAIGGVGADFFKARGMNLAYEYRGVSDIPTFNEVREIVKTAVTMYD NGVFDELYVCYNHHVNTLTSAFRAEKMLPISDLDVSEVEDTNVEYLVEPDLDAVLDAVLP QYAESLIFGAIMDAKTAEHAASTTAMRSATDNANDLISHLSTQYNRARQAAITTEITEIV GGAAALE >gi|225002526|gb|ACIZ01000053.1| GENE 61 51597 - 53063 1489 488 aa, chain + ## HITS:1 COG:SP1508 KEGG:ns NR:ns ## COG: SP1508 COG0055 # Protein_GI_number: 15901355 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 4 468 2 468 468 741 82.0 0 MPNSTGKIAQVIGPVVDVAFPINDNLPEINNALTITRKDGSQLVLEVALELGDGVMRTIA MDSTDGLQRGMAVEDTGGPISVPVGKDTLGRVFNVLGDPIDDGEAFGPDHRRDSIHRDAP KFEDLNTSSEILETGIKVIDLLEPYLRGGKVGLFGGAGVGKTVLIQELIHNIAEEHGGIS VFTGVGERTREGNDLYFEMKESGVLENTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTKKGSVTSI QAIYVPADDYTDPAPATTFAHLDATTNLERRLTEQGIYPAVDPLESSSSALTPEIVGEEH YKVATEVQQVLQRYRELQDIISILGMDELSDEEKVIVARARRVQFFLSQNFNVAERFTGQ PGSYVPVEETVKGFKQILEGKYDDYPEDAFRSVGRIEEVVEKAKKMGFAPDDQDTDADEK PAAQAAAN >gi|225002526|gb|ACIZ01000053.1| GENE 62 53078 - 53509 418 143 aa, chain + ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 8 139 4 135 138 129 53.0 2e-30 MAETSNVLRVNIVTPDGLVYDHHAKMLVVHSVAGELGIMANHEPIVTPLEIGEVDVQRVD SSDHNDSIAVNGGFMEVSDNVASIVADSAERERDIDLSRAQAARDRAKKRIAQAKDENNQ DDLRRAQVALRRAINRINVKTSH Prediction of potential genes in microbial genomes Time: Wed May 25 19:48:12 2011 Seq name: gi|225002525|gb|ACIZ01000054.1| Lactobacillus rhamnosus LMS2-1 contig00057, whole genome shotgun sequence Length of sequence - 19866 bp Number of predicted genes - 23, with homology - 23 Number of transcription units - 10, operones - 6 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 179 - 415 273 ## LGG_01187 membrane protein 2 1 Op 2 . + CDS 480 - 1469 1049 ## COG1077 Actin-like ATPase involved in cell morphogenesis 3 1 Op 3 . + CDS 1482 - 1652 211 ## LC705_01208 hypothetical protein 4 1 Op 4 . + CDS 1661 - 1966 144 ## COG0759 Uncharacterized conserved protein 5 1 Op 5 . + CDS 1959 - 2180 300 ## LGG_01191 hypothetical protein 6 2 Op 1 . + CDS 2302 - 3507 969 ## COG0772 Bacterial cell division membrane protein 7 2 Op 2 . + CDS 3519 - 3818 427 ## COG0509 Glycine cleavage system H protein (lipoate-binding) + Term 3864 - 3906 7.6 - Term 3852 - 3894 -0.0 8 3 Tu 1 . - CDS 3948 - 5072 924 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 5219 - 5278 4.0 + Prom 5480 - 5539 5.6 9 4 Tu 1 . + CDS 5574 - 6401 834 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Prom 7169 - 7228 2.7 10 5 Op 1 10/0.000 + CDS 7251 - 8081 802 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 11 5 Op 2 32/0.000 + CDS 8100 - 9152 1016 ## COG1135 ABC-type metal ion transport system, ATPase component 12 5 Op 3 . + CDS 9157 - 9846 737 ## COG2011 ABC-type metal ion transport system, permease component + Term 9862 - 9899 7.0 + Prom 9933 - 9992 7.5 13 6 Op 1 41/0.000 + CDS 10027 - 10794 792 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component 14 6 Op 2 24/0.000 + CDS 10787 - 11818 1002 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 15 6 Op 3 19/0.000 + CDS 11787 - 13007 1085 ## COG0520 Selenocysteine lyase 16 6 Op 4 6/0.000 + CDS 12994 - 13440 406 ## COG0822 NifU homolog involved in Fe-S cluster formation 17 6 Op 5 . + CDS 13433 - 14869 1335 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component + Term 14973 - 15032 9.4 + Prom 14987 - 15046 4.3 18 7 Tu 1 . + CDS 15111 - 15293 179 ## LGG_01204 hypothetical protein + Term 15344 - 15379 0.1 + Prom 15490 - 15549 2.5 19 8 Op 1 . + CDS 15628 - 16008 393 ## LC705_01224 hypothetical protein 20 8 Op 2 . + CDS 16069 - 17037 519 ## PROTEIN SUPPORTED gi|170016569|ref|YP_001727488.1| ribosomal protein S2 + Term 17126 - 17171 5.2 + Prom 17544 - 17603 8.4 21 9 Tu 1 . + CDS 17701 - 18588 781 ## LGG_01207 XRE family transcriptional regulator + Term 18626 - 18672 7.0 22 10 Op 1 . - CDS 18780 - 19280 503 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 23 10 Op 2 . - CDS 19341 - 19619 246 ## LGG_01209 hypothetical protein - Prom 19643 - 19702 2.1 Predicted protein(s) >gi|225002525|gb|ACIZ01000054.1| GENE 1 179 - 415 273 78 aa, chain + ## HITS:1 COG:no KEGG:LGG_01187 NR:ns ## KEGG: LGG_01187 # Name: ywzB # Def: membrane protein # Organism: L.rhamnosus # Pathway: not_defined # 1 78 1 78 78 100 98.0 1e-20 MFQEIGLNAAITLVSHFVFIMLAFRALNALRFEQFIKANHVREAQVLLLFMAVGLGYLVS SFFLSLVQAALNLPKLFL >gi|225002525|gb|ACIZ01000054.1| GENE 2 480 - 1469 1049 329 aa, chain + ## HITS:1 COG:BH3739 KEGG:ns NR:ns ## COG: BH3739 COG1077 # Protein_GI_number: 15616301 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 2 324 3 325 334 422 65.0 1e-118 MAKDIGIDLGTANVLINVKGKGIVLNEPSVVAIDTHTGKVLAVGTEAYKMVGRTPGNIRS IRPLKDGVIADFDITEAMLEYFINKLNVKGVFSKPNILICAPTNITDIEQKAIIQAAEKS GGRHVYLEFEPKVAAVGAGLDIFQPQGNMVIDIGGGTSDIAVLSLGEIVTSRSLRLAGDK MDASIAAYVKNKHKLIIGEHTAEQIKIKIGAVYDADPKETIEVRGRDIATGLPREVSVTS AEVSDALHETMMAIIDGAKGVLEKTPPELSADIIDRGIMLTGGGALLKGISQLFADELKV PVLLADDPLDAVALGTGVLLDNIEHHRQY >gi|225002525|gb|ACIZ01000054.1| GENE 3 1482 - 1652 211 56 aa, chain + ## HITS:1 COG:no KEGG:LC705_01208 NR:ns ## KEGG: LC705_01208 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 56 1 56 56 79 100.0 3e-14 MDSQYPKRVFHHVKIWLIVALIALILGLLIGFGMGGDNPFKVFLPSTWIHFFNFLR >gi|225002525|gb|ACIZ01000054.1| GENE 4 1661 - 1966 144 101 aa, chain + ## HITS:1 COG:L122982 KEGG:ns NR:ns ## COG: L122982 COG0759 # Protein_GI_number: 15673654 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 85 1 86 88 112 60.0 2e-25 MKQILTWLVRGYQRFISPLFPPSCRYYPTCSTYMIQALQRHGAVKGLLMGIARILRCNPF VKGGLDPVPAYFTLRRNPHPENDLDLSDIQNLNRKLGGHHG >gi|225002525|gb|ACIZ01000054.1| GENE 5 1959 - 2180 300 73 aa, chain + ## HITS:1 COG:no KEGG:LGG_01191 NR:ns ## KEGG: LGG_01191 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 73 1 73 73 140 100.0 1e-32 MAKEKNIKVAQMDETRNGHTVSVLRIGDQEIGFIEPDGTRFAAYVAGSNKPNRFKNIDDA VNALIAEYHLHQG >gi|225002525|gb|ACIZ01000054.1| GENE 6 2302 - 3507 969 401 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 14 388 14 388 414 339 51.0 7e-93 MESHEIKSNSEGDRIDYGIILSVMLLALIGLVSIYLATAHDTTTLQNPVRATIMQAAWYV IGGIGIFFVMRFDAEQLWRIAPYLYGIGIFLMIAVLIFYDKTTAINTGAKSWFALGPVSF QPSEIMKPAYILMLSRVVTQHNAAFSHTIQHDWQLIGRMVLWTLPIAVLMKLQNDFGTTL VFLAIFAGVTLVAGINWRILLPIALIGAAIGTLAILLVTQSWGRSFLGSIGFKTYQFARI DSWLNPSGSTSGDSYQLWQSMKAIGSGQLTGKGAFHIAVAVPVRESDMIFSVIGEAFGFI GAAVLILLYFMLIYQMIRVTFDTKNEFYAYISTGVIMMILFHVFENIGMNIGLLPLTGIP LPFISQGGSFLLANMLSVGMVLSMRYHHTSYMFSRDTEDFE >gi|225002525|gb|ACIZ01000054.1| GENE 7 3519 - 3818 427 99 aa, chain + ## HITS:1 COG:BS_yusH KEGG:ns NR:ns ## COG: BS_yusH COG0509 # Protein_GI_number: 16080332 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Bacillus subtilis # 15 96 22 103 127 70 42.0 7e-13 MATTYFWQDELAAGQVRLGLTQEAQEALGKIKFVDLPEIGTSLTVGKPFLSVEAEKAVLD LEAPLAGTVVDVHRELSDKPALLDETDHNDNWVVTVSTK >gi|225002525|gb|ACIZ01000054.1| GENE 8 3948 - 5072 924 374 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 5 373 7 378 378 280 41.0 4e-75 MTDPIAFLQKLIQIDSANGNELAVARVLQAELEAADIPTKLIPYKDDRVNLVAQLNHGDR VLGFTGHEDVVSPGDENAWTYPPFSGKIVNNTMYGRGTDDMKSGLAAMTLALIHLKQSGF AHPLRFMATVGEEFGAMGARQLTEQGYADDLAGLVVGEPTNKLLKYAHGGTVNYEIDSEG VSVHSSRPEKGVNAIEGLVAFATREPHAFDQAPDDPDLGPFRHSITVIKGGDQVNTIPAH AYLRGNLRPTPAANIELVVGLLEKLVDQANKATAANLTLNVLHRFLPVHSDKNGHLVTTA NEAIAAVTGKPAELAVAFGGTDASEFIRSDNQFDVIVYGPGDNHFSHQIDEHVDLDSYTT AIKTYEEIAKRFFA >gi|225002525|gb|ACIZ01000054.1| GENE 9 5574 - 6401 834 275 aa, chain + ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 26 275 30 285 286 211 50.0 1e-54 MKRIWKIFATVVLLGLILVSCGKSGSQASSQKQTTVKIGVVGADNRVLKAVAKKVKKQGI NIKIVQFSDYNQPNTALKDHDIDLNLFQHQYFLNNWNKTHNADLVSIGQTIIAPLAIYSK KITKISQIKQGDTIALPNDPTNEGRALQLLQTAGLIKLNKKVALPTTRDVTTNKLNLKLK AVDAAQTASSLPDVAASVVNSGVAQDAKLNPKKAVFTEKVNKQSQPWINVFVANKKDKNN ATYKKIVKAFRTKDIADLIEKLYHGSEVPAWTQKF >gi|225002525|gb|ACIZ01000054.1| GENE 10 7251 - 8081 802 276 aa, chain + ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 25 276 29 285 286 200 47.0 2e-51 MKFWKRAIITLALVLPVFVLAACGKSSSSSSKNETVKVGIMSTDKEIWTDIQSRLKKQGV TIKLVQFTDYNQPNQALEDGDIQLNAFQHHNFLNNWNKKHNTKIADIGDTYIGPMRAYSN KIKSLKEVKQGDQISLPNDPSNEGRALQLLAQNKLITLKKGVASPTIRDITSNKLNLKFT ELDAAQTARSLNDVAVAVVNNDIAAAANLKPANAIAVEKITSQSKPWVNFIAAKSSKDKN NATYKKIVKAYQTKRTAELLKKVYKGSTLPAWNYKF >gi|225002525|gb|ACIZ01000054.1| GENE 11 8100 - 9152 1016 350 aa, chain + ## HITS:1 COG:SPy0320 KEGG:ns NR:ns ## COG: SPy0320 COG1135 # Protein_GI_number: 15674484 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 3 350 2 354 354 349 55.0 4e-96 MSDQAVVTLKDVDVEFHGKNRSVHAVDHVSLTVNRGDIYGIVGYSGAGKSTLVRTINLLQ RPTGGSIHVLGQDMLALAPAELRKERKRIGMIFQHFNLMNSRTIADNVAFPLKGIKSKQE IQKKVAELLDLVGLTDRANAYPAQLSGGQKQRVGIARALASDPEILISDEATSALDPKTT SSILELLQSLNKRLGLTIVLITHQMEAVKQICNRVAVMDAGAIIERGDLLQVFSDPKQQL TKDFIDTTLQLDQAIEAVMQQPAVKNLGANDRLLRLTYVGDSADKPLVAKLFESYHVTAN ILFGDIQILQDTPFGNLIVVLSGAQTDVDAGIHYLEQQDVKIEDILKKEA >gi|225002525|gb|ACIZ01000054.1| GENE 12 9157 - 9846 737 229 aa, chain + ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 229 1 230 231 195 56.0 8e-50 MAQFFTKYFPNVVPIWSGDGGVTQAINETLYMTALTAIVAGILGIIIGILLVLTDEGGLL ANHPFYFILDKLVNIFRAVPFIILLAIMTPVTRAIVGTGIGPTAALVPLIAGTTPFYARQ VQNALLTVDPGVIEAAEAMGVSPLGIVWRVYLREGLSELIRVSVLTIISVIGLTAMAGAV GGGGLGNLAIAVGYQRYQYDVIIVSLIFILALVFLVQFIGDFFARKSHH >gi|225002525|gb|ACIZ01000054.1| GENE 13 10027 - 10794 792 255 aa, chain + ## HITS:1 COG:L34806 KEGG:ns NR:ns ## COG: L34806 COG0396 # Protein_GI_number: 15673775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Lactococcus lactis # 1 245 1 241 256 334 68.0 1e-91 MHTLEIKDLHVKIKAEPEHPEILTGVNLKLATGEIHAIMGPNGTGKSTLAETIMGNPAYE VTQGDILIDGQSILDLAVDERARAGLFLGMQYPQEIAGVTNAEFIRAAINARRPEDDQIR ITDFLNQLDKTMATLEMPESMADRYLNQGFSGGEKKRNEILQLMMIHPHFGLLDEIDSGL DIDALRIVAKGVNLMRGPEFGSMIITHYQRLLDYIIPDVVHVMKGGRIIESGGPELAKEL EKTGYEHLKVGDQNG >gi|225002525|gb|ACIZ01000054.1| GENE 14 10787 - 11818 1002 343 aa, chain + ## HITS:1 COG:SP0868 KEGG:ns NR:ns ## COG: SP0868 COG0719 # Protein_GI_number: 15900751 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 101 338 174 417 420 189 43.0 1e-47 MVETTTLPAPNLPKFPLARYLKNQPDAVEDRVILHAPQDIAYAAGSSEAQRFNPKTSLDA WLLQSPQGATTIDIPAHFVSGDDPIVLTGPKNAGGLLYVHVGKGANVTVQEKWASGGHVL GIWLMLVIEADAQVNWLSYDSFSADTVLVNRTATLADNAKLNWTLAGFSHNSGLNRVDVR LLGQNAEATVNVGVLASGSQHVSYTTSVTNEGQHTVGHINQRGVITGSAHLLFNGIGHIV KGARGSDAQQENRVLMLSPRAEGDANPILLIDENDVTAGHAASVTRVNADQLYYLMSRGL SATLAKRLVIRGFLEGGLAEIDDQRLKKELFATIDRTLVAEDA >gi|225002525|gb|ACIZ01000054.1| GENE 15 11787 - 13007 1085 406 aa, chain + ## HITS:1 COG:BS_yurW KEGG:ns NR:ns ## COG: BS_yurW COG0520 # Protein_GI_number: 16080321 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Bacillus subtilis # 9 405 6 405 406 370 47.0 1e-102 MIERWWLKMREQFPFFKAHPELVYLDTAATSQKPQALLDSLQNYYINENANVHRGLYKLA YDTTEAYEGVRQEVADFLGAQSADEIIFTRGTTDSLNLVASAFGPHAVPEGGRIVVSGAE HHSNFIPWQQLAKRQHAKFEVTPVYPDGVVDVPALLAAITPETNLVAIAQVTNVAGDTLP VAAIAKKAHAVGAVVVVDGAQAVAHLPVDVQTLGADFYAFSGHKIYGPTGIGVLYGRADL LAKMPPIQFGGEMISEVRDDVSTWAEGPIKYEAGTPNIAGVIGLGTALHWFKQNVDAAVL KTEHDLSDQLRSELAAIPDVTVYGNQASLATVSFNLAGIHPHDLATFLDEQQIAVRAGHH CAQPLMARLGVPATVRASFGVYNNADDVAKLVEAVRAARRYFHGVD >gi|225002525|gb|ACIZ01000054.1| GENE 16 12994 - 13440 406 148 aa, chain + ## HITS:1 COG:SP0870 KEGG:ns NR:ns ## COG: SP0870 COG0822 # Protein_GI_number: 15900753 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Streptococcus pneumoniae TIGR4 # 1 143 1 143 146 131 47.0 4e-31 MALTKLDQMYRAVILDEAQHPRHHGTLTDFDHEITVRNPSCGDVLHLQIREQAGRVDDVA FSGSGCTISQASASLMTEQILGKTPAEIEQMVETFSDLIINGSVPDAEILGDAAVLKGVH QFPARIKCATLAWKAAAQVLTQRGETDD >gi|225002525|gb|ACIZ01000054.1| GENE 17 13433 - 14869 1335 478 aa, chain + ## HITS:1 COG:SPy0290 KEGG:ns NR:ns ## COG: SPy0290 COG0719 # Protein_GI_number: 15674464 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 28 478 22 472 472 679 71.0 0 MTETKNTKNNEVVAADIDFLPDENPADFKDDIKPVYSTGRGLTEDTVRAISAEKHEPDWM LAYRLKAYATYRKLAMPNFGPDLSDLDLDNMLYFQKATDRTYRDWEDVPDTIKKTFDRLG VPQAERKYLAGASAQYESEVVYHNMRDEFEKLGIIFMDMDSALKEYPELVHEYFGKLVKP SDNKFAALNGAVWSGGSFIYVPKGVQTDVPIQSYFRINAENTGQFERTLIIVEPGAHVNY VEGCTAPNYSSDSLHAAVVEVFVKNDAYCRYTTIQNWSKNVFSLETKRAQALDNATMEWV DGNLGSKTTMKYPSVYLDGKGAHGTMLSIAVAGEGVDQDNGARMIHNAPNTSSSIVSKSI AKDGGAVDYRGTVRFTKKADNAFCHVECDTILMDEKSSSDTIPYNEIHNSTVSMEHEAKV SKVSEEQLYYLMSRGISEAKATEMIIMGFVEPFTKELPMEYAVELNRLIGMEMDGSVG >gi|225002525|gb|ACIZ01000054.1| GENE 18 15111 - 15293 179 60 aa, chain + ## HITS:1 COG:no KEGG:LGG_01204 NR:ns ## KEGG: LGG_01204 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 60 1 60 60 104 100.0 9e-22 MDNYDKARKVLQSMALSKIAQETGISIGQIWHYRDRYEGIQKAPPAYVERIASLYRKKRV >gi|225002525|gb|ACIZ01000054.1| GENE 19 15628 - 16008 393 126 aa, chain + ## HITS:1 COG:no KEGG:LC705_01224 NR:ns ## KEGG: LC705_01224 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 126 1 126 126 244 100.0 6e-64 MAEDLEHFIKAMALGIPTIKPDEKRAFLGNFRERVAMAVTIRQLRDAQITAMLDSVLKRY PGYRIFLNGRMGESLVNQYMMQALAHQYPFTIMNQPGMRVTKRVLPTDFGWVLAHPTQKI SRPILL >gi|225002525|gb|ACIZ01000054.1| GENE 20 16069 - 17037 519 322 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|170016569|ref|YP_001727488.1| ribosomal protein S2 [Leuconostoc citreum KM20] # 1 320 1 326 329 204 31 4e-52 MTQLDTIQTTVQQLRISLNQGKIFATLPDMLGKVITSIATEPKTSLKIPWDDKTAVARIR AIQKRVKQTSDPSVTDDEIAFLVAHLASTNPAVRDKGVFFLFNDLFQAEAFTNEQVKALF KRLQAPDILFSHIFEPENDAIFLRSFAVMILSGMIYADQNRYHILSKNDYLSTVQNIGTY ILLEKDGRGYVPNKGWAHAFTHIGNMLEELSQVPVLPRSEKVFLMAAVVEAWRRVETPLI FGEDHRLALYFSSLTNVNQFYSETFLMCLKNWQHTLVNVRPQESYRFWVQWYNRNRLLQA LTLRADLPQPIADYIQQIVDLF >gi|225002525|gb|ACIZ01000054.1| GENE 21 17701 - 18588 781 295 aa, chain + ## HITS:1 COG:no KEGG:LGG_01207 NR:ns ## KEGG: LGG_01207 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.rhamnosus # Pathway: not_defined # 1 295 1 295 295 557 100.0 1e-157 MRKEQQTLRILGDKVRYYRKLKGLSQAELAANICTQATISLIEKRNKVPSMNILMRLISR LGIQLDDIVVEHHDRAQQMLNAIDYQIHHHQYAIAADNLSKIRFEKIKNEDDQKRYYYYQ GIVELFKNNAPDESIYFFGRVLSPLVNSERDLYGILATLGLGLAYADKHTFDRSRVYIDQ ALRMLKHVPLSDSKYLDIELTIYWHIARVYYELSDFKAVLKYADHGIREAVKHDKLFLLD ELFTLKARAMKLLGDPQADKIYQIAIAFAEVSGSTTLAAGLSAEMAAQKPNIETA >gi|225002525|gb|ACIZ01000054.1| GENE 22 18780 - 19280 503 166 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 149 1 149 152 166 57.0 2e-41 MLQQYQHILVAIDGSYEAELAFKKAVAVAKRNQAELILIHIVDTRAFQNVSSFDSAMVEQ VTENAKTTMEGYVDQAKKAGLEKVSFSIEYGAPKTIIARDIPKAKNIDLIMIGATGLNAV ERLLIGSVTEYVTRNALCDVLVVRTDLSNKPALASTKKPTPHEPND >gi|225002525|gb|ACIZ01000054.1| GENE 23 19341 - 19619 246 92 aa, chain - ## HITS:1 COG:no KEGG:LGG_01209 NR:ns ## KEGG: LGG_01209 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 92 1 92 92 121 100.0 7e-27 MTLILMSIYALFVFALAAYTWRHRNQNFLMIKKPAPALTRFLKIFTVLFTVVGVFAIIGG LAFPTWANLVILVSGAFLATIFIFISLTQIKL Prediction of potential genes in microbial genomes Time: Wed May 25 19:48:49 2011 Seq name: gi|225002524|gb|ACIZ01000055.1| Lactobacillus rhamnosus LMS2-1 contig00058, whole genome shotgun sequence Length of sequence - 53687 bp Number of predicted genes - 47, with homology - 47 Number of transcription units - 26, operones - 14 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 289 - 1584 1043 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Prom 1756 - 1815 6.0 2 2 Tu 1 . + CDS 1925 - 3886 1457 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes - Term 3880 - 3915 1.1 3 3 Tu 1 . - CDS 4068 - 4490 526 ## COG5506 Uncharacterized conserved protein - Prom 4607 - 4666 4.9 + Prom 4554 - 4613 3.4 4 4 Tu 1 . + CDS 4655 - 5263 390 ## COG4493 Uncharacterized protein conserved in bacteria + Prom 5301 - 5360 5.9 5 5 Op 1 9/0.000 + CDS 5429 - 6094 743 ## COG1760 L-serine deaminase 6 5 Op 2 . + CDS 6142 - 7011 820 ## COG1760 L-serine deaminase 7 5 Op 3 . + CDS 7105 - 7797 571 ## COG0406 Fructose-2,6-bisphosphatase + Term 7801 - 7850 4.4 + Prom 7896 - 7955 4.7 8 6 Op 1 . + CDS 7978 - 8817 865 ## COG0225 Peptide methionine sulfoxide reductase 9 6 Op 2 . + CDS 8839 - 9774 542 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 9870 - 9913 1.1 + Prom 9895 - 9954 5.5 10 7 Op 1 . + CDS 10001 - 10732 509 ## COG3201 Nicotinamide mononucleotide transporter 11 7 Op 2 . + CDS 10808 - 11536 753 ## COG1428 Deoxynucleoside kinases + Prom 11668 - 11727 7.4 12 8 Tu 1 . + CDS 11798 - 12610 803 ## COG1387 Histidinol phosphatase and related hydrolases of the PHP family + Term 12623 - 12676 11.2 - Term 12617 - 12659 8.4 13 9 Tu 1 . - CDS 12666 - 14183 1346 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 14331 - 14390 5.9 - Term 14350 - 14389 -1.0 14 10 Op 1 40/0.000 - CDS 14437 - 15342 762 ## COG0642 Signal transduction histidine kinase 15 10 Op 2 . - CDS 15358 - 16032 645 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 16052 - 16111 4.8 + Prom 16082 - 16141 5.8 16 11 Op 1 . + CDS 16178 - 17107 267 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 17 11 Op 2 . + CDS 17107 - 17874 752 ## LC705_01246 hypothetical protein + Term 17903 - 17968 -0.4 - Term 17894 - 17950 9.1 18 12 Tu 1 . - CDS 17964 - 18848 760 ## COG0583 Transcriptional regulator - Prom 18895 - 18954 5.5 + Prom 18854 - 18913 5.2 19 13 Op 1 1/0.286 + CDS 18962 - 19378 376 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain 20 13 Op 2 . + CDS 19382 - 19699 339 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 21 13 Op 3 . + CDS 19736 - 19861 62 ## gi|229552026|ref|ZP_04440751.1| conserved hypothetical protein + Term 19870 - 19926 9.1 + Prom 19871 - 19930 7.0 22 14 Op 1 . + CDS 20112 - 20222 76 ## LGG_01232 hypothetical protein 23 14 Op 2 . + CDS 20238 - 20732 298 ## LGG_01232 hypothetical protein + Term 20872 - 20914 -0.0 + Prom 20789 - 20848 4.3 24 15 Op 1 . + CDS 20950 - 21813 527 ## LC705_01251 acetyltransferase 25 15 Op 2 . + CDS 21827 - 22300 391 ## COG0456 Acetyltransferases + Term 22310 - 22360 2.2 + Prom 22374 - 22433 4.7 26 16 Tu 1 . + CDS 22456 - 23313 801 ## COG1307 Uncharacterized protein conserved in bacteria + Term 23397 - 23448 11.3 - Term 23385 - 23436 11.3 27 17 Op 1 . - CDS 23468 - 24313 325 ## LC705_01254 hypothetical protein - Prom 24346 - 24405 2.4 28 17 Op 2 19/0.000 - CDS 24420 - 25028 419 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 29 17 Op 3 6/0.000 - CDS 25031 - 26137 724 ## COG4585 Signal transduction histidine kinase 30 17 Op 4 45/0.000 - CDS 26127 - 26891 518 ## COG0842 ABC-type multidrug transport system, permease component 31 17 Op 5 . - CDS 26893 - 27777 272 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 27955 - 28014 3.5 32 18 Op 1 . + CDS 28032 - 29528 1336 ## LC705_01259 hypothetical protein 33 18 Op 2 . + CDS 29543 - 31081 1129 ## LC705_01260 hypothetical protein 34 18 Op 3 . + CDS 31131 - 31778 494 ## LC705_01261 GNAT family acetyltransferase protein + Term 31892 - 31954 22.4 + Prom 31919 - 31978 6.1 35 19 Tu 1 . + CDS 32024 - 34201 1436 ## PROTEIN SUPPORTED gi|149175515|ref|ZP_01854136.1| ribosomal protein S1-like RNA-binding domain + Term 34235 - 34297 19.0 + Prom 34359 - 34418 6.1 36 20 Op 1 1/0.286 + CDS 34442 - 35191 644 ## COG2071 Predicted glutamine amidotransferases 37 20 Op 2 . + CDS 35184 - 36485 1137 ## COG0531 Amino acid transporters + Prom 36497 - 36556 2.6 38 21 Tu 1 . + CDS 36800 - 38047 638 ## COG0270 Site-specific DNA methylase + Term 38048 - 38078 2.7 - Term 38026 - 38074 17.4 39 22 Op 1 . - CDS 38075 - 40036 526 ## LC705_01267 hypothetical protein 40 22 Op 2 . - CDS 40029 - 43541 1128 ## LC705_01268 helicase domain-containing protein 41 22 Op 3 . - CDS 43556 - 45973 454 ## LC705_01269 hypothetical protein - Prom 46026 - 46085 7.3 - Term 46329 - 46377 5.0 42 23 Op 1 3/0.000 - CDS 46383 - 47102 1234 ## PROTEIN SUPPORTED gi|229552047|ref|ZP_04440772.1| ribosomal protein S4 43 23 Op 2 . - CDS 47170 - 47652 267 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 - Prom 47756 - 47815 6.0 + Prom 47693 - 47752 4.3 44 24 Tu 1 . + CDS 47827 - 49530 1854 ## COG4477 Negative regulator of septation ring formation + Term 49547 - 49580 2.8 + Prom 49888 - 49947 8.1 45 25 Op 1 7/0.000 + CDS 49975 - 51132 1050 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 46 25 Op 2 . + CDS 51262 - 52479 1034 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase + Term 52484 - 52555 19.1 + Prom 52707 - 52766 6.3 47 26 Tu 1 . + CDS 52803 - 53465 582 ## COG2344 AT-rich DNA-binding protein Predicted protein(s) >gi|225002524|gb|ACIZ01000055.1| GENE 1 289 - 1584 1043 431 aa, chain - ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 3 427 4 426 427 553 64.0 1e-157 MQQPLAFRMRPQNLDEVVGQQELVGPGRIIRRMVSAHRLSSMILYGPPGTGKTSIASAIA GSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRI VLIGATTENPYMNIQPAIRSRTQIFQVKPLTPTDISTAIDRALADNKRGLGKYQVDLTPE ARDYLTHTTNGDLRAALNGLELAVLSTPAKSDGTITIDLTTIQQSLQKPAISGDTNGDAH YDIISAFQKSIRGSDVNAALHYLARLIAIGDLNSITRRLLVIAYEDIGLANPTTASRTLT AIQSAERLGLPEGRIPLADAVIDLCLAPKSNSGIKAIDAALADVESGQAGQIPDDLRDAH YRGAKQLGHGQGYKLPHNYPNGWVAQQYLPDNLKNKQYYQPKTTGRYEAALAQRQQQLKS WQHEAQKVKKK >gi|225002524|gb|ACIZ01000055.1| GENE 2 1925 - 3886 1457 653 aa, chain + ## HITS:1 COG:CAC1540 KEGG:ns NR:ns ## COG: CAC1540 COG1181 # Protein_GI_number: 15894818 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Clostridium acetobutylicum # 333 649 6 326 328 118 27.0 4e-26 MNHYWQLIRKEHLFGLAAQTRMGVIRTVKPILPAETNLPQWPQRSRHALVQPLSASVLQI VTPLLDDFPAVIDQLRAGLSRIWTALPEAGHLSAFTAEKVNQQTVRIVLPETLFERLYTA ENFQGHGPEYVAYRNEVYQLVADGLTRQLPLLTYLFSASPADGHRAFWPSPDQERQLVQK VTDPDHLDRILALDVVVELDPYAASGITTQMLTFLRDSCWFALSQPAIPVAAASEVRRHA VMQARTIAQMAPDAKVAELPAMLDAMATWLNHVGIDAQQKQAFELMQTRLVKPETSLASQ VLATFHDQTAADESLSRQAQADLTSTNELPGMTDLSENTQTLLQAAMDGGYQFTILDRQQ NLVQIATDTQTQVIADGVVTNYTPANAMIVATHRHTAKQLLAAAGIPVARGAKFTKWPDA KAAFEHSFAHKSIVVKPEARSQGEAVEQFSIPPTEKQFDRAFHEANRHHGVLIEMMARGT TYHFTIIGQQVLSVLETAAANVVGDGRKAIKELIALKNGHRATSRQLQLDASARRQLKAQ ALTPETVLQRGQQVFLTTAAHPQTGGDLYDVTDEIDDSYKQLALKAAATLDLPVAAVDIV IDNLYAPYDPEADGQANVISVNPVPDLAAPLHLDMGESRALAPALLNWLFAVR >gi|225002524|gb|ACIZ01000055.1| GENE 3 4068 - 4490 526 140 aa, chain - ## HITS:1 COG:BS_yueI KEGG:ns NR:ns ## COG: BS_yueI COG5506 # Protein_GI_number: 16080228 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 120 1 115 132 73 35.0 1e-13 MAEDNMQEHLNSALYGPPQTKPDERRKYMGSLRERVALCISNQELADPKRQHQVAPFLKD FHDRNYKALLNGKLDNAITGPYMKLLTDANVPFTLVANETAQTADTAPGLLIVAATAINQ ANITLPPLDDTQEKPKKKWF >gi|225002524|gb|ACIZ01000055.1| GENE 4 4655 - 5263 390 202 aa, chain + ## HITS:1 COG:lin1053 KEGG:ns NR:ns ## COG: lin1053 COG4493 # Protein_GI_number: 16800122 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 167 6 175 204 131 37.0 9e-31 MFTSDDFAVFAAPTLSARMALIRQQLDPKFTQAAQSIVPLLQTPNQPIFAHIAQHRRRHK NPPPNTWVAFSTSRRGYKMLPHLALGFWDDRLFLWLSCLRESKPVPNDFSGITDVISTLP DSWLLASEHTSKATVPLTAASLAQTIERFETVKSAEFLVGWVYLASDPLWQIPDKLWLDI QQRVRTLAPVFARLVQNTAAVR >gi|225002524|gb|ACIZ01000055.1| GENE 5 5429 - 6094 743 221 aa, chain + ## HITS:1 COG:L43452 KEGG:ns NR:ns ## COG: L43452 COG1760 # Protein_GI_number: 15672812 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Lactococcus lactis # 1 220 1 222 223 271 59.0 8e-73 MPDVRFHSVFDIIGPVMVGPSSSHTAGAARIGKVVRDIFGETPETITIYLYESFAKTYRG HGTDVALVAGLLGMAPDDPRLPESLKLAYDQGIKVSFVPKSDKVDHPNTAHIVLQAGDHR LAVTGVSIGGGNIQITEINGFKISLSMGQPTYITIHDDVPGMIAQVTKIFSDAGINIGTM TVTRTAKGEQAIMIIETDDYHDDILAKLKLLPHMRNVTYFE >gi|225002524|gb|ACIZ01000055.1| GENE 6 6142 - 7011 820 289 aa, chain + ## HITS:1 COG:L44083 KEGG:ns NR:ns ## COG: L44083 COG1760 # Protein_GI_number: 15672813 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Lactococcus lactis # 1 287 1 287 287 318 64.0 5e-87 MFYTVKELVEQSHAFSSVAELMVHTEVENSTRTEAQIRHLMSRNLEVMERSVKEGIAGVK SVTGLTGGEAKKLNHYIADDRFMSGKPIMEAVRNAVAVNEVNAKMGLICATPTAGSAGVL AGVLLAMRDRLHLTHDQQLDFLFTAGAFGLVIANNAGIAGAEGGCQEEVGSASAMAAAAL VCANGGSAEQAATAVAITLQNMLGLVCDPVAGLVEVPCVKRNALGASQAMISADMALAGC ISVIPADEVIEAVNRVGMQLPATLRETGEGGLATTPTGLRLKEQIFGKK >gi|225002524|gb|ACIZ01000055.1| GENE 7 7105 - 7797 571 230 aa, chain + ## HITS:1 COG:SP0240 KEGG:ns NR:ns ## COG: SP0240 COG0406 # Protein_GI_number: 15900176 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 2 221 4 221 230 100 32.0 3e-21 MINLYIIRHGETAGNVRRLIQGVTNSHLNARGRKQAFALGVGLRTSGLKVERIVASDLIR AQETAQQILLGMQKKLPVETDSGLREQNDGIFEGRELEDVSQEVFQVPDYHQLVTSGKVP IEAIADGFHAADTTNQAEDSQQVIARYDFALRRIVAAAETAGQSNVLVVSHGTASLLWLR AHGGVLPNRTELTNASVSKVTYQDGRFKVAWLDNTSFRDQGLKEAWTHDA >gi|225002524|gb|ACIZ01000055.1| GENE 8 7978 - 8817 865 279 aa, chain + ## HITS:1 COG:L67708 KEGG:ns NR:ns ## COG: L67708 COG0225 # Protein_GI_number: 15673988 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Lactococcus lactis # 98 263 4 169 172 225 64.0 8e-59 MMKLTVEAYLAKLTNLLLAPGTRAFERQQLVRAKQQVEGGASVGASWDQLKASLRPLAIR DNLTPDVADFYRAQTGDSEGAQTTDISAHFQHDLAYQERAIFAGGCFWCMVEPFVDQPGI QSVISGYTGGDVPNPTYEQVISDQTGHVEAVEIIFDTRRIRYQELVDLYFQLTDPTDALG QFQDRGGHYRPVIFVAGPSQRQIAEAAKAKVAASGRYVRPIVTAIEPAATFWPAENYHQD FYKKNPQRYQLVEKTRQQFLKFQHAQGDLRVLLKRRKAK >gi|225002524|gb|ACIZ01000055.1| GENE 9 8839 - 9774 542 311 aa, chain + ## HITS:1 COG:MT2323 KEGG:ns NR:ns ## COG: MT2323 COG1028 # Protein_GI_number: 15841754 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Mycobacterium tuberculosis CDC1551 # 13 311 9 311 317 161 36.0 1e-39 MQKPKRHWSERDMPNLAGKVAVVTGGTSGVGLAMSAALLRHGAAVTIVGKNKSKGELAVV KLKQQTKRQAITFMAADLSEQQAVNRLADRLLQVLPHLDILINNAGVMMPAKRIATADGV ELTWAVNYFSGFMLTLRLAGLLEKAPAARVVNVASIAMGNPQLTFNQFDGHNYRPWHFYI TSKLAQAMMAVKLNQLFQAAGHSVMVNASSPGLAATSLKVIQSKATAWPMRLAAVSFRVL PWMRQSPQQAALPALYAATAPRAEGGVIYAPALWHGLRGYPGLSAWNQRPELHDQALLDR LYRASRQVTGI >gi|225002524|gb|ACIZ01000055.1| GENE 10 10001 - 10732 509 243 aa, chain + ## HITS:1 COG:L100822 KEGG:ns NR:ns ## COG: L100822 COG3201 # Protein_GI_number: 15672860 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Lactococcus lactis # 6 232 3 230 243 114 30.0 2e-25 MQTSGNYFSWLLHQLKGWPQQNYYLFWFAFGCQLMTLVDAKITAVTVITFIGTTLGVLCV LAINATKAVNGWLGLLSAACFIFVGYTARNYLSMFEQIAYVVTLDLPVLISVRTWNDDTK NHLKTFNLQKWVLSIGFTLVVWAVSAYLIGQFTNDPRPVYDGMAFAISLTGGIVCFLRYN NQYFWWLFSGIAQLILWAVTFAQGDASLAMAINSSIYVINDILAFTVSPWFNRGRKQLGL KTL >gi|225002524|gb|ACIZ01000055.1| GENE 11 10808 - 11536 753 242 aa, chain + ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 218 3 212 217 115 30.0 8e-26 MIYILGSIGAGKTSLTKVLSADMEAPAYYEDVEGNGMIANMLQKFYGAGADSRKRTGAML QIAFLTFRYQQLKKAVTQENAIMDSSLESDFVMASQLHKHGEIDDIDYNVYVTLSQEMQS NVNGSPWNGLPDLAVYLKIDPDHELDEIQSRGRDMEDIRQKPELVAYYQRVNAAYQDWAK GYTRSSMITIDRDRYDFMHSAADRATVLDQIESKLVDLGKLSPQTFEALQAKHAAGPISK FA >gi|225002524|gb|ACIZ01000055.1| GENE 12 11798 - 12610 803 270 aa, chain + ## HITS:1 COG:FN0428 KEGG:ns NR:ns ## COG: FN0428 COG1387 # Protein_GI_number: 19703770 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Histidinol phosphatase and related hydrolases of the PHP family # Organism: Fusobacterium nucleatum # 3 250 2 250 258 176 36.0 3e-44 MTIYDQHMHTLYSFDSEAQLRDYLAQTQAPVVTTEHLEFDNPDDGGRDDLPDYAGMKRTQ AALASHYQNEMLLGIEAGYFAPAEERLRDYLANHDFDLTLLSFHHDGQHDYLDAQLAGLP AKQQLEDYFTRMLAGLKQFHDADVLAHFDYGLRLFDITPEQLEAWGKPLLDQIFAIAVAH DLALELNTKSMYRWQNAPLYDQAISWYQQAGGHLFTIGSDAHEGPHYEANFNQALAMLKR HGVKEIATYRRHHRTMVPIEPPVVDADNVY >gi|225002524|gb|ACIZ01000055.1| GENE 13 12666 - 14183 1346 505 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 2 504 52 557 559 324 37.0 2e-88 MESDVLQTLDPSKASEGVSGQAIIDTMNGLYKYYGHKLQPAMATKIVKPTNNGLTYTFTL RDAKWSDGTPVTAQDFVFAWQRTVNPATKSSHANMYSGIKNADDIRAGKKPAATLGVKAI NSKTLEVTLEHPIPYFNSLLNNVAFFPQPAKKVQEWGNKYGTKSEYTLSNGAFKSKGWTG TGDKWTEVKNNRYWNQKNVHLTQIDVQVVKDTNTALDLYHTGKLDDATLTGQLAAQQKGK TGYVATKRARTYFLELNENKVPAFKNTKIRQAISMAINRDSFVKNVLADGSIVARGITPA DLSQLPDSSTDFATAVGKGTKTITTYNKKKAQTLWNQGLKELGIKNVNVELLGDDVDAVK ATQEYLQGTLQENLPGLKISIASVPAKNRQQRASTRDFDMVLSTWGADYPDPNTYLDLFT STSEYNHGQWQNSDYDQLMAKANGADANNPTARFKDMTQAEQLLVNQAGAIPLYQLVAAR MVNPKMHDLKTSPGNSFNFVYAYLK >gi|225002524|gb|ACIZ01000055.1| GENE 14 14437 - 15342 762 301 aa, chain - ## HITS:1 COG:CAC0863 KEGG:ns NR:ns ## COG: CAC0863 COG0642 # Protein_GI_number: 15894150 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 21 293 21 295 300 118 27.0 2e-26 MLGFLILLIVICLVLFALLLLVITDVHRISRDLDYINHHNTNAGITSNTNLPLIRKLSAG INQNLNTMHQLQIEQVEQEKKIHQMLMDLTHDIKTPLTVATGYVQLLDRQPEADPKPSLA RIANNLRSVNYYLHYLMDFNLIQEKTRSLNHQSVNVSELLKNELFDYYDQLTASGLKVTP AITDQLMLETDETLMRRIIQNLIGNWLKYAKSQAKLSFARQDNHHLVMTFSNDTAQPVSH VDQLVDRFYTTDAARTTQSVGLGLSIVQSLTTTLGGKMKLEAHDDSFTVKLTFRTDKLPA H >gi|225002524|gb|ACIZ01000055.1| GENE 15 15358 - 16032 645 224 aa, chain - ## HITS:1 COG:CAC0860 KEGG:ns NR:ns ## COG: CAC0860 COG0745 # Protein_GI_number: 15894147 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 4 223 7 229 231 160 39.0 2e-39 MAKILIVEDHQDIQALLKDVLTPTYTVIQAYDGIQALTAFHREQPDLIILDLMLPNVTGE SVLTTIRKTSQVPVLVLTAIQEKAKTVALLQQGANDYLTKPFDIDELLARIQVQLRQVSG QPLMTNDQLKVGEIQLDPKRHVVTVNQQTLTLPKKEYDMLALMMRDPHQVFDKSQLYEHV WGEPFLNADNTLNVHISNLRTKINELAHDPKYIISIWGIGVRLI >gi|225002524|gb|ACIZ01000055.1| GENE 16 16178 - 17107 267 309 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 6 301 5 303 305 107 31 1e-22 MDEPVLTIDQVSKQFGHFQALDQVSFTVERGDIYGLIGENGAGKTTLMRLITGLSPMQAG TITLLGERAGHYQRALSRVGAIIESPAAFEKLTVTQNLRLCAIQHGINDQQVIAETIDFV GLREKRTTRVKHLSLGQRQRLGLALAILPRPDFLILDEPINGLDPAGIMEFRRLLKLLNE ERKTTILISSHILSELYQVSTRFGIIHHGQMIKQLSKAELDQANQSGLAITVDRATVAAQ VLDQHGYQPFDVLDDQHLLLRQKDVDAAAVNQLLVTSGVSVQDVSHQAGSLEQFYMRLLG QTEKQEGQA >gi|225002524|gb|ACIZ01000055.1| GENE 17 17107 - 17874 752 255 aa, chain + ## HITS:1 COG:no KEGG:LC705_01246 NR:ns ## KEGG: LC705_01246 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: ABC transporters [PATH:lrl02010] # 1 255 2 256 256 402 100.0 1e-111 MNQIRADFYRQRRTLGMYVIVLITIAYAVWSVTSKNVGGVTVHGDDNLIAQIAAKTWTVQ FGVQAANMTDTLLLYFFIGVFVIVFGYEFSQKVYKNTLISGISRLQFVLAKYLVMLLDLL ILFTVNFGIALLGGLAKGRALGASWPSVLNTMSLSIVAATFFLSVIFSLGVFLLIATGSM TIATIVVVIFPILVGVIHLIGEWSWLKYIDFLAVSQNLGVGSMEMSELPPYIAVSLGFLI VMIGSSAWLLQKKEL >gi|225002524|gb|ACIZ01000055.1| GENE 18 17964 - 18848 760 294 aa, chain - ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 287 1 287 291 230 38.0 2e-60 MELRTLRYLVAIADAGTITAAANKIHISQPALSRQMQELERELGTKLFNRKNRAISLTAN GTYLVNRARQILNLTDAAITDMTDDQAINGSLAIGLGESRLNRSVLHAAKTLVTTFPDVK LKIYSGNAAEITEQLDHGLLDFGVVIDPADTYKYAYTPITGENIWGLVVPKTDPLAKFAA VTPKMIRHQPLIISERQPVVTLFEKWAGPNFDPAQIVARFNLAYNAGILTNLGLGYTVGL DHLLDNREMALSFIPFSPKLTTRMTLIWTRHAPMSRTAQKFLTIFQQQNPSPAT >gi|225002524|gb|ACIZ01000055.1| GENE 19 18962 - 19378 376 138 aa, chain + ## HITS:1 COG:L178204 KEGG:ns NR:ns ## COG: L178204 COG1917 # Protein_GI_number: 15673516 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Lactococcus lactis # 3 134 4 133 133 145 58.0 2e-35 MTKENDHAGLFGLGQANTAYQQYFKGQSYLHSLVGAENEIDVHVANVTFEPGCRNNWHIH HHGFQILLVTSGEGWYQEAGKPAQKLRPGDVVTIHEGIKHWHGATKDHWMSHIAITKGTS EWLEPVSDEAYAALTEVE >gi|225002524|gb|ACIZ01000055.1| GENE 20 19382 - 19699 339 105 aa, chain + ## HITS:1 COG:L178933 KEGG:ns NR:ns ## COG: L178933 COG0599 # Protein_GI_number: 15673518 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Lactococcus lactis # 1 102 1 102 102 137 59.0 5e-33 MKKQTAGRKQLGDFAPQFAALNDDVLFGEVWAKENELSARDRSLITIACLMTSGDFPQLK AHLKMGKDHGLTKEEVVATITHLAFYAGWPKAWSAMGLAKEVYGK >gi|225002524|gb|ACIZ01000055.1| GENE 21 19736 - 19861 62 41 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229552026|ref|ZP_04440751.1| ## NR: gi|229552026|ref|ZP_04440751.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 41 1 41 41 81 100.0 1e-14 MCEGQIAPFGNVVTGHRMQEVADFIKGYNAAKVELTEHMKD >gi|225002524|gb|ACIZ01000055.1| GENE 22 20112 - 20222 76 36 aa, chain + ## HITS:1 COG:no KEGG:LGG_01232 NR:ns ## KEGG: LGG_01232 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 36 1 36 206 68 91.0 5e-11 MVLKADFFDHYHYKTELAALCREYHLTASGTKAELN >gi|225002524|gb|ACIZ01000055.1| GENE 23 20238 - 20732 298 164 aa, chain + ## HITS:1 COG:no KEGG:LGG_01232 NR:ns ## KEGG: LGG_01232 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 164 43 206 206 297 98.0 1e-79 MLGEPPETPTRTSGPTAKVNLGAITLTTPLAGSGFAFNAAARRFFAAYFKTSKFAFTKPM AVVKRQAESRPELGLTVADLVAVYQATQTPSARKQFLAHNVEEQTYEWNRFVRDFFADHA TVVFSSRLKVAAILWKNVKRSMTPKRCTHQLLSRYREEIARYKL >gi|225002524|gb|ACIZ01000055.1| GENE 24 20950 - 21813 527 287 aa, chain + ## HITS:1 COG:no KEGG:LC705_01251 NR:ns ## KEGG: LC705_01251 # Name: not_defined # Def: acetyltransferase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 287 1 287 287 589 100.0 1e-167 MKIKSGTLDQGWELVDRLDHDNVKSHPFSGKGADLTINLVVKQGTQVIGGVAASSDDYGI GYLEMLWVDPMFRRQGIGQALLVAVEQELFKAGCRKVRLETFDYQAPSFYRANQYQAFGK LHYTHAALTEYFFVKPLQLQVSPVLPAIYTLASGDDAAMTWVEDQFEAENLAKKPLLQAK PGITFTFLAEEDGQCVGGIFGYSAMYRIGYIEALWIAPAYRRKGLGTRLVNQLLAAFKEI NCPIVHLDTLSFQGPQFYPALGFQQFGTVDYPDNGVSELFFVKLIQD >gi|225002524|gb|ACIZ01000055.1| GENE 25 21827 - 22300 391 157 aa, chain + ## HITS:1 COG:SP0640 KEGG:ns NR:ns ## COG: SP0640 COG0456 # Protein_GI_number: 15900546 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 82 157 5 80 81 90 53.0 1e-18 MVSSNSIIVTREKAPAKKQAIVREVLADLPEWFGLPASTQEYIDAAATLPLWVAKQDNQV IGFIDFDKTTQATGEINCMGVKKAYHHKGVGRQLFQALAVFARQHAHYLQVKTVDEGHYP EYDRTIRFYEAMGFERLEVFPQLWDAWNPCLVLVKKL >gi|225002524|gb|ACIZ01000055.1| GENE 26 22456 - 23313 801 285 aa, chain + ## HITS:1 COG:CAC1624 KEGG:ns NR:ns ## COG: CAC1624 COG1307 # Protein_GI_number: 15894902 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 3 282 2 277 280 172 37.0 7e-43 MTEKIAILVDSGSDVPKSVLDTNPNIAVVPLNITMNGHNYLDAVDITPDEFYSALATAET LPKTSSPSPHAAKEALAGLFAAGYTQILGITISSALSVTHHVFQLAAEEFPDKQITILDT KSIGIGSGIQVAYATSLINAGESFQTLVAKVEASIVKSRIYFYVPTLKYLSAGGRIGRVA GLVGSVLHIKPVISCDPEGVYYPIFKARSEEKALQKLVDQIKQDCVNSDHYRIGVAHGQN PTLVKKLAAKIEEATGHPVDFIGEVSPSLGVHTGPGLIGATVQSY >gi|225002524|gb|ACIZ01000055.1| GENE 27 23468 - 24313 325 281 aa, chain - ## HITS:1 COG:no KEGG:LC705_01254 NR:ns ## KEGG: LC705_01254 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 89 281 1 193 193 395 100.0 1e-108 MDTSKLTLLFPGNPLRVSQPDPDYAEEYTVAKSMTNVRLINLDCLLDQNQLELNTSFPSE TTVIYRGWMLRPETYSKMNSLILASGAKMLTDTHAYTGTHLLPRWAHHSNTLKSAWTTDL SDKDIIRVLNQFSGPVTIKDFVKSRKHEWYSAFYIPNAQNFSQALEVIHNFITRQGENLV GGLVIREFVPLLQTGTYLSNNPTFEEYRVFYWQRNPFVVIDYWGKNFESLNANDQQFIKK QGADIKSSFFTIDFARKINGDLTIMEIGDVNHFYRLWLNQK >gi|225002524|gb|ACIZ01000055.1| GENE 28 24420 - 25028 419 202 aa, chain - ## HITS:1 COG:BS_yocG KEGG:ns NR:ns ## COG: BS_yocG COG2197 # Protein_GI_number: 16078980 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus subtilis # 1 201 1 198 199 195 52.0 5e-50 MITLYLAEDQSMLNSALSQLLNLEDDSTVIGSAQDGATAWQAIQSQPPDVAILDIEMPKM TGLDVADQIHTHALPTKVIILTTFAQKAYFQRAIAAQVNGYLLKDSPSDDLIAVIRKVMT GQTVYAPELVANMVTAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIF SKLGVHNRIEAIEMAKRNKWLA >gi|225002524|gb|ACIZ01000055.1| GENE 29 25031 - 26137 724 368 aa, chain - ## HITS:1 COG:BS_yvfT KEGG:ns NR:ns ## COG: BS_yvfT COG4585 # Protein_GI_number: 16080460 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 61 365 24 322 328 132 28.0 9e-31 MRHSFRLWLSNLEWTSYIWLLYLPYIMSEFIPTKSSIDWLWIGLGVLFLVVYILVNEIDR WLAVTIPLELFIAGLFSIFAFNNYMIIYPGWQISFILARYPRKYFRWFATAFYLIMFIGL WRYNHFHPGVISLDNANIGDLIFPLASPLISYAVARSVIRRRQLSQTNRRLQAVVRRGER ERIARDLHDTLGQSFSMITLKTELAKKLLIKAPERVAQELDDIAKTSRDNLQLVRAIVND LHQQSLSEMMLEQGKNLAEADVVLLTNGENEATEWPTTVQAQLSAVISEAITNVIRHAHA HQAIITFDQTPTAYLVEVQDDGHSKSYVRAGSNGISGMQQRMQAVNGTFSIVHNRQGTRV SLTLPKEA >gi|225002524|gb|ACIZ01000055.1| GENE 30 26127 - 26891 518 254 aa, chain - ## HITS:1 COG:SP2002 KEGG:ns NR:ns ## COG: SP2002 COG0842 # Protein_GI_number: 15901825 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 15 237 14 236 245 99 30.0 6e-21 MKTFFAQLAFDGKRLVVRNASFIFFSIIMPAGFYLLFTKIMVSGSAAEIKQFNLTYLGQM IVYSVLIEAFFSIASILRRDREKGLTTFLRLSPHGTLPYYTSITFWMLMMSLLSVVVLGG IAVGVNGVRLEITQWLGLIVVVLIGQLPLLMIGIALSHIHREEMLSLASNLLTFPMALVS GLWWPISMLPSWLQAIGKLMPTYFVNNLLNELTSRAKVDLTNLIGIAVWVLLAGLVVVAM TRNEQRRGVALGEA >gi|225002524|gb|ACIZ01000055.1| GENE 31 26893 - 27777 272 294 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 293 1 305 305 109 30 4e-23 MHTIIRTEHLKFSYGKKQVLNDINLTVNAGEIIGLIGVNGAGKTTLLNILLGLLKGEGAV SVFEQQPGSAISKARIGSMLQGDMVVPGITIADLLKLAAAESDHPLNTNKLLTDLRLEPF KTQRLGSLSGGQLRRVTFAVALINQPDLLFLDEPTVGMDANSRKAFWDNIEQLRQEGKTI VITSHYLEEIQQIADRLLILQKGRFTFDGSLQQLQKQHLGATITFETDLQLPIFNGLPAV DRVDHLKHKLVIHSTDGDQTLRALTPLLDRLHQVSVNRESLEDIFLQLTQQEAS >gi|225002524|gb|ACIZ01000055.1| GENE 32 28032 - 29528 1336 498 aa, chain + ## HITS:1 COG:no KEGG:LC705_01259 NR:ns ## KEGG: LC705_01259 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 498 1 498 498 947 100.0 0 MAATLSEPLRNLLLASQLGLSVHHPLAGWSVLTILYRDAGSSSEPITLSYLARKYNNDYL DGLSGETPIADDVLKKVLDVLVTQAGLVEVSPRKVRARMRSGQYHIRQSYVYRITSSGIE YLKMMQKVIDAESTITANTNRIQEYVDLVEKLSVPVRSGADTRLYNDFKNMLDAYDDVMK GIHKLEDDLDEIANDIAFNHGSQAAAHLQQMLRQEAIPAYRQMLNQAARIQGLADDRTFP DQIAHSQQGEGDLDAAHAAGRQDVLVTRFQRNKQWAQSQLNRLSLSMSPTTTAIDSSLDS IYLVFNTLLGIVRLLSQEFEHAKRQTIDLKVLSKKIDGLLAHYVQLTIPAQIPRHLPADR EVDDPNDLLDASTMGPVHYLANPITKQPASAADNPTVTDDAPSEQAQLAGLREFRQTLMV DDFHGRVDHNLTLKTVTARDEIVKLFAATYHKDLAAFAPFGRATKSVEALPDSPPLQLQV AGEDYAVVLPHGFTFSFD >gi|225002524|gb|ACIZ01000055.1| GENE 33 29543 - 31081 1129 512 aa, chain + ## HITS:1 COG:no KEGG:LC705_01260 NR:ns ## KEGG: LC705_01260 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 512 1 512 512 998 100.0 0 MAQITKRDQLVINELLDHGVFTTTPLAAATQLSRGAIADLKKPSVQKRIGFYFKNMFGIM PENFQENLLFLLGTEKLSPVQVHVLLATVKTIINEPELQNNQADRAIATQKIVRQVHSEV TELDERELLRTIDALFVKRFGLFTPDRLEDDSENVPAEIDDYWEVHPDFNEFTQNLVNYL VNTQSQEEVSEIQKVNRVLLTEQFMSPKANPQLWSTLAVNKQEIAEQWAQGGRFVLEIGD RYALLLDTQRQPSVAKPYLVALAVAHQLGAGVAAADLTALIRKKAVAMGLTAHTLNDARE DPALFAYYRWVMTHCFQSGQVNELTARLIGMAFTSANVFETDLPQPLTLNPWQLTPMLDF PLKNKQAVVIENNGVFALLHQEHPDWPLILQSGNDFNDVYVRLIQRLEERGMRYAYLGDI DSAGIRMADRFASLLKQTPAEAVAALQTPRDVRLWLAELGKRNSARTRALQVTSPVFQAE MVSVTMFGKFVEQEQLMPIYTQRIADWLKQED >gi|225002524|gb|ACIZ01000055.1| GENE 34 31131 - 31778 494 215 aa, chain + ## HITS:1 COG:no KEGG:LC705_01261 NR:ns ## KEGG: LC705_01261 # Name: not_defined # Def: GNAT family acetyltransferase protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 215 1 215 215 437 100.0 1e-121 MYTIENYRPELLESWLRCRALAYMRSGFQDEITGEKETVTAENGISLVATVDSQVVGIAE AIFLNQEQAKPESYGLPAKMPLSTLDTMAVHPDFQHQGIAKALLAQLKRRLQSRGGALLI YTLDDEPANQLYRAVGAKLCYTAAIVHGHSSHNKVPQWVNFHVTDDHQMTLYDAQGAEIP YGQDMETYFVGKKVNIDLLKDVSKIVTEHVYVLDI >gi|225002524|gb|ACIZ01000055.1| GENE 35 32024 - 34201 1436 725 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149175515|ref|ZP_01854136.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris DSM 8797] # 17 722 29 736 828 557 41 1e-158 MIEDQTIQIVQQDLTGMTSRQISTVLNLMNEGNTVPFIARYRKEMTGSLDEVQIQAIEEA YKRVTALQDRKAAVIKSIAEQGALTPELEQQIHASTKLQDVEDIYLPYKQKRQTKATIAK ARGLEPFAQWILSFPVGDLTSEAAKFVNPDKEVATEQDVLDGAHEILAEKFSEMAPIRNW VRNFTMRTGTIKTTVKTKGKELDEKGVYQQFYDFEETVKKMSSTRTLAINRGEKEKILTV KVQVDPASVMQYCHFKLIDNRPSTEATAFIEAAYQDAYKRFIGPAIEREVRNTLTESAEE QSIKVFGQNLYNLLMQAPIKGKVVLGFDPAYRTGCKLAVVDENGKFLDKAVIYPHKPAPE KKRQAAASELIALLEKYHVTMIAIGNGTASRESEQFVAETLKQIKRDIYYVIVNEAGASV YSASQEARDEFPDLHVEQRSAISIARRLQDPLAELVKIDPESIGVGQYQHDLPAKALASE VDAVVERAVNQVGVNLNTASYQLLTHISGLSKTIATNIVKYRDENGRYNSRAELKKVPRL GPKSFEQSVGFLRIIGGKQPLDNTDIHPESYPVAKKILAAAGLSTADLGDHEAVAKVASV DGAPFVNDGVGVETVNDIISSLQNPGRDLRDNMAAPLLRQDVLTMEDLKPGMKLEGTVRN VVDFGAFVDIGVKHDGLVHVSKMTRKFVRDPKTVVAVGDIVTVWIESVDLNRERIQLTMI APTVG >gi|225002524|gb|ACIZ01000055.1| GENE 36 34442 - 35191 644 249 aa, chain + ## HITS:1 COG:lin1909 KEGG:ns NR:ns ## COG: lin1909 COG2071 # Protein_GI_number: 16800975 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Listeria innocua # 1 243 1 238 244 181 44.0 2e-45 MRPIIALTGDSMVAPSPVINLNYADMAPNMIKNAIVKVGGAPLILPYPEDDAAAASLAAQ YVDVFDGLVLPGGPDVDPTFYHEEPIQAMGRATYQKDRFEIALIKATLKANKPIFAICRG IQILNVALGGNLYQDLPSQNPQATIRHAQAAPGQWPTHHVAITPGSHLAALLGTSSYVNS RHHQAVKDVAASLKVTAKAPDGVVEAVESKESNLILGVQWHPENMWQQFPEQLPLFADIV KRAGGDGNE >gi|225002524|gb|ACIZ01000055.1| GENE 37 35184 - 36485 1137 433 aa, chain + ## HITS:1 COG:SPy2088 KEGG:ns NR:ns ## COG: SPy2088 COG0531 # Protein_GI_number: 15675845 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Streptococcus pyogenes M1 GAS # 17 425 23 432 447 263 40.0 7e-70 MNNVVKKEQMGYWSMILLGINGIIGSGIFLLPNQAAKLIGSASIFVLLFDALLVISIALC FAQAATYFDRDGGPYLYAKDAFGDFVGFEVGFVTWAIRIIAEATMAVAFTTALVGTFPAL NQPIIRDSIISVMVIGLALMNIAGVRVSTVVNNVISVSKLVPLVLFVAIGIFFIKGSNFT PLFPGGSYKSGSFGQAAVVMFYAFTGFEGLVVAAGDMKNAKRNLPKAVATVMTVVALFYI LIQVVSTGILGNALANTDTPIQTAFAKITGGFGNALVAAGTLLSTGGLLVASSFITPRSG VALAENHMMPQLLAKRNRVNSPYVAIVVSATITLLIAYSGTFGYLAQISAVSRFAQYIPT CLAVIVFAKTKTKDKSSTFHLPLGPVIPAVAILVSIWLLVQVQVSQLVIGLGALLVAVPF YFLTYTYRQHGKV >gi|225002524|gb|ACIZ01000055.1| GENE 38 36800 - 38047 638 415 aa, chain + ## HITS:1 COG:MTH495 KEGG:ns NR:ns ## COG: MTH495 COG0270 # Protein_GI_number: 15678523 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Methanothermobacter thermautotrophicus # 5 410 6 405 413 295 40.0 1e-79 MKQNIIDLFSGAGGLTEGFRRPEYNILAHVEMSVDACQTLRLRDDYYQLKKRNMLQQYRN FLDGKISLSELEQQCGLRQKALTINETIDTGTIDGILAKIDSKLSNRQVHGIIGGPPCQA YSTVGRKRNEAKKETDKRIYLYRFYIQFLEHYKPEFFLFENVRGLLSFKDLDGKRLFPKM KQEFEAITDKLGYHIDWKLIDCSEFGVPQERKRIILYGQRNDLPKFSFFERLADLQETPG TVGELFRDLPKLKAGETCNKYSKAQPCAFVVENLRTPASKLTQNVARPNRELDLKIYKIA AEKRAKHKILHYNDLPEDLQTHNNKKAFLDRFKAVPADGVSQTVVAHIAKDGHYYIHPDV EQNRSITVREAARIQTFPDDFYFMGSRTQAFKQIGNAVPPYLAKKMAQTILLNKQ >gi|225002524|gb|ACIZ01000055.1| GENE 39 38075 - 40036 526 653 aa, chain - ## HITS:1 COG:no KEGG:LC705_01267 NR:ns ## KEGG: LC705_01267 # Name: dcm # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 653 1 653 653 1349 100.0 0 MTRFNDGKISNDGQRRSPENQIRQSQLITPFGTGALTQINNQSVMICDSQFWQPTSNEDP IVDIRLQSSLNAAGFIAPPTDLTKEFITGVSFPQWYFGPKNRELRTLSQWRADLRNDADL KRFNVKPFHFELSKSNKRYREELIPVRLVCACRDGHIQDFPWMEWAHSKEKNDFPRGTHR LKLKDNLLSGTIGDLVVECSCTAKRNLQGVFDDSFGATLLRIGVNCHGRYGWKKNEHPKQ CHRQPVALMRNANNLYFSDIVGSVNIPEEDTALQEQLVQNPTYQTLLKQVLKSTTLNEAK TILSQRYAPLLETLVDETENSLTPEKLINVFSSVWQAAHAEEKQSQMDYRRDEYLVLTGA KEYARNTNRFDMTLQPREHFGDTKLASVFQNITLLNQLEVISVLKGYSRIRPIESDMMLE QEQIERASSGRAGLADEAPVNEVSLRRSDNRFVALKNSGEGIFIELSSQHLNLWRNKLDG SKIFANIVRKRSVQVPENRKPLIDPAYYMLHTFSHILLRELSFASGYSSSALKERLYFSR GQADKSDMAGILIYTSSADSEGTLGGLVRQGIPDNFFKTLASALEKARWCSYDPTCIDSS GQGRDSLNIAACHACALVAETSCEMGNVFLDRGVLVGTLDEPNLGFFSAYINE >gi|225002524|gb|ACIZ01000055.1| GENE 40 40029 - 43541 1128 1170 aa, chain - ## HITS:1 COG:no KEGG:LC705_01268 NR:ns ## KEGG: LC705_01268 # Name: not_defined # Def: helicase domain-containing protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 1170 1 1170 1170 2339 99.0 0 MTDRISKSKQEAIRSRYLNSITAKILGPGSEHFVSDSSVEIISEPPRNRYITGILYPKVA SKATDGVSGDDQDVDFDAESEPIVVDNTFKPSSIGLSFYCLKTSTLDFTINTSVYDTTVN PWIDLPTDLLESILNIVTDAQATEPILKISDDQKQIAYADSYAQKPISLQKQLRNLLDQL KEKPEMKDATAFLYRLYNLNYRSEKSKKAKPQIYQRRPISTKVTLDLTKPRFTTEIMKSG KPLGLSIFAKVRELPLSDNKGEVCSVTLVVQNTSKSTIFFQTQVILNATRSLKFYASEDV MDTHLDQLSKEDQKIRFEYRNKKTFAIGHGISVGWLPQAGEVQSIFTEYIPTYELSPMSF DLEGLSKDILRPDSYLFEVPKETQIQSLTKFAAKYDAWIAKRELQVPEIKMENPCYAEIA NSNLRDCRICSNRIHQGIEVLRKDPAALLAFDLANEAILLQRSKNLERKMQCFRSRTYEN LEDDPNTSFAWRPFQLAFILTTIDSLINERSDFRDVLDLIWISTGGGKTEAYLCAIALVV LYQRLGDADAKGVTVIMRYTLRLLTAQQFQRASSMICALEFLRQHRDDLGINEISVGLWV GGGSTPNHRKEAKMDFINLRKNHDSPNPFQVLECPWCHQKHSIIPDDTEKLVIDAWGYAP LVNDNGFDLQCQNFSCPFHEKLPIYVIDDSIYKNQPTLLFGTVDKFAQVPINEKTAALFS CSNNKTGKVYKPQLIIQDELHLISGPLGSIVGLYESSFDYILSSGASRPKYLASTATIRN SQEQVRNLFDRDVMQFPPDGLDVDDNFFVKTSKPSAGGNLYGRLYVGVMGTGKTQVTTEI RLFAALLHSIVELDLSPEEQDLFWTVVGYFNSLRELGKASTLLMDDVRDELRRLTKLEGS ASSRQLNTFGNLELTSHVSSSEIVSTIEKLTHAHTSDERAVDTMIATNMLSVGIDISRLN SMIVVGQPKLTSEYIQATSRVGRDTLGLVFALYSSTKSRDRSHYEAFTSYHQSMYAQVEP SSVTPFSQPALDKALAAVLIGMLRHTNPALLSQKNASSILKFKPELARAKTFLLDRIQRN DSENLYTAKASEKLDAISEHWLQFAVLSDNTANKNLLYFAGKKDATPDTVYLLKSFDMRQ AHHEAYFAMNSMRDIENSGNISIKESLTDD >gi|225002524|gb|ACIZ01000055.1| GENE 41 43556 - 45973 454 805 aa, chain - ## HITS:1 COG:no KEGG:LC705_01269 NR:ns ## KEGG: LC705_01269 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 805 1 805 805 1516 100.0 0 MNLEKYTEKMISFLPKQLFNKDPMLSKVLRDFTAAEDSGGGYLYYYLSEQVPAALAALAA LRTLLSNIADRQVLYPEKIKSGTPLVYAETSYTFIGVEKLNGHDVCKMASDSDGLLLTIP REIFLSSVSLAKSVSSRKTTDTRAKVAALFHISHFSRTDESNIVILTDKVVIDRLEKMNF RIEGRALSFGAVVPSEYYPAGGKTKHLKGTTKTMVPMVTFVSKLQTLNTLLHERISKRFT LYMIGDTWWKYSNKDMLANVRDFITRHSIETHILSMLSSAVSTAGATFMNASDTLYSWLT ADEFKTRTISANFIQTDATIDAESTEITEFLASIRDQQLFDLERSLRRFQQTLFSSVISN SQSVAQAFQLVKDELQLQNIVAEDTAKDLLQHLTRLVNGNYAVQLDNLLAGLIIDNQTVI LTHSVLAGEMRTNYNLRKKKAHVIEYGEPIQSIDRRYVPERLIMIVPQISERRRWMYSGI AREVTIVAPKDFARQLATSLSNDLFFLKQVLQTDQLVDVDYDSAFVNSISNLRNSLTCKS EKEDSELTPEEDSDSLEREESILNDETKEQLSKTSPTATQDNHVIAKYRLAFLENKRAKM FVTPSATILTRDNEGILRHKPIADFKPMDEVAYVQRIENERWYQNDFAKLFDSTESLAKL FENHPDHQKDFEWKQVFIKYVRSNHLTPNDLVQKFLRYGLDHTQGYFRYWSQPNSVKFVP QDLEFIRIIGQLTNNLDIEENAETYRQSSVTVRDWYQDQRQQALDRIEGQKLDMTDTPIS FMTIATITPVSEYLPRYRTNRLLED >gi|225002524|gb|ACIZ01000055.1| GENE 42 46383 - 47102 1234 239 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229552047|ref|ZP_04440772.1| ribosomal protein S4 [Lactobacillus rhamnosus LMS2-1] # 1 239 1 239 239 479 100 1e-134 MTVVTAAAKVNLCRTARVLKPQFVILLQIKTWRNTHMSRYTGPRWKQSRRLGLSLSGTGK ELARRPYAPGDHGANNRRKISEYGQQLREKQKLRWMYGLNERQFQNLFLRAGKIKEGTHG DNFMILLETRLDNLVFRLGLASSRPQARQLVNHGHITVDGKRLDIPSYEVQPGQVIGLRE RSQNLAVVNEAIENTVSRPAYVTFDDNKKEGSLVRLPERGELEPEVDESLVVEYYNQKL >gi|225002524|gb|ACIZ01000055.1| GENE 43 47170 - 47652 267 160 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 10 143 15 146 165 107 41 1e-22 MTTLDPIIIDQLDGLLTGETNPITVLANASALLNDSISELNWAGFYLYNGKTGQLDLGPF QGKVACMHIQPGKGVVGTSYQQNSVIRVANVHEFAGHIACDSASNAEIVVPINVNGETVA IMDIDSPKLNRFSENDEQILTQFGQTLASHLDTAALNTVY >gi|225002524|gb|ACIZ01000055.1| GENE 44 47827 - 49530 1854 567 aa, chain + ## HITS:1 COG:L7722 KEGG:ns NR:ns ## COG: L7722 COG4477 # Protein_GI_number: 15674133 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Lactococcus lactis # 26 567 31 575 576 203 26.0 7e-52 MIWFFIIVAIIIVAAGSVWWLQHYFQTRIKDLDEKVEAIDIGALSSQIRSIEQLKLTGDS LATFGKWERAFDQLNDHDLAELQKILLDLEDQVKRFRLDRASKIAKVLEDKIETAQRQYE LISQALQDIRHDEADNRSKMLQLRDDYQVSRKTILAKSFVFGDAQPALEQQLQQLAQLFQ KIDQINNDGDHQAAKAEIKQLAEQMRVLKKQVKELPPLVNEQVNEFPGQINEIQHGYRQL TTAHYVFTDDIPGMVADVEAKMKDANAALKSIDVEATEAANAEIEAEIDKMYAIMEKEMQ AKKRVDVASPDLRRFIDHALRQNRELQAELDHLNQSYTLNHHEIKTAKNLKMQLDAIDAN YTKDTDAIEAGEAVYSDVIARFDETKEQLTAIEKQQVQINQDVAGLKKGEIIANKQAESF ELDMRNIKHEIVRHHLPGLPQDYVDKVKHVTAEIDQLNHDLDQVKINMDAIAKFLIKIAS DIDDLKKTTSALIDAAGLTEELMQYANRYKITVKPVADAVKHATELYMQFDYQQAADTLA TALEQTEQGSYKKVEDAYLARKKASLY >gi|225002524|gb|ACIZ01000055.1| GENE 45 49975 - 51132 1050 385 aa, chain + ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 380 1 379 381 409 52.0 1e-114 MIYFDNSATTKISPDALATYNKVSTDFFGNPSSLHALGTKANEVLQSSRAQIAKLIGAKP DEIYFTSGGTEGDNWVIKGTAMAKREFGRHLITTSIEHPAVINTMKQLEKLGFEVTYLPV DRRGFIHIDDLKAAIRKDTILVSIMAVNNEIGSMQPIVQAARVLDNYPNIHFHVDAVQAV GKGLDAALQDPRIDFLSFSGHKFHAPRGTGFIYAKEGRMLDPLLTGGGQEHDWRSGTENV PAIAAMAKSLRLLLANEDANVARQQAVRKRIFDHVSQKPKVTMFSQLTPDFAPHVLCFAI AGVRGETIVHAFEDHQIYISTTSACSSKKGTESSTLAAMHTDPKIATSAIRVSLDEANTL DEADAFNAAFDTIYAKFAKLDKATV >gi|225002524|gb|ACIZ01000055.1| GENE 46 51262 - 52479 1034 405 aa, chain + ## HITS:1 COG:L183112 KEGG:ns NR:ns ## COG: L183112 COG0301 # Protein_GI_number: 15672361 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Lactococcus lactis # 3 387 5 389 406 460 60.0 1e-129 MQYSEIMVRYGELSTKGKNRQAFIGRLNGNVTRALHEFPNLTIRPKRDRMHIELNGEPSD QVMARLSQVFGIQNFSPSIAVEKDMAKVHEVALQLMNETAPHGISYKVNTRRSDHDFALD TNAMNLDLGDFLTDKRPDLVVKMHHPDMILRVEVRREAIYLSTKTIQGAGGLPVGTAGRA ALMLSGGIDSPVAGYYALKRGVDIEMVHFFSPPYTSQQALNKAKQLTAKLTPYVGRIYFI EVPFTEIQEAVKATVPEGYLMTVQRRMMLRLTEAIAKQRGDLAIFNGESVGQVASQTLES MAAINDVTTMPIIRPVATMDKNEIIAEAEKIDTYDLSIMPFEDCCTIFAPPSPKTKPKTD RARYYESKLDVDGLMARALAGIKVQEIKSSDQFLNQDQDVIAELL >gi|225002524|gb|ACIZ01000055.1| GENE 47 52803 - 53465 582 220 aa, chain + ## HITS:1 COG:BS_ydiH KEGG:ns NR:ns ## COG: BS_ydiH COG2344 # Protein_GI_number: 16077664 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Bacillus subtilis # 5 204 5 203 215 157 41.0 2e-38 MVVSKQALSQATIKRIPVYYRTVKDLQQTGVKRVRSDRLSKLVHIAPATIRRDFSNFGDL GRSGYGYSVDLLAQVFGELLEVHSEEQMLLVGCGNLGRALLTNNFRRNPDLTIVVGFDTD PQLIGTTIAGVPIFDLTTLAKNIRPGMHTAIVCVPSSAQTSVINQLEANGITAILTFAPK PVPAKPTTTIRYIDLTSELQALLFVDHQKQVSRQVTEPLR Prediction of potential genes in microbial genomes Time: Wed May 25 19:49:55 2011 Seq name: gi|225002523|gb|ACIZ01000056.1| Lactobacillus rhamnosus LMS2-1 contig00059, whole genome shotgun sequence Length of sequence - 13102 bp Number of predicted genes - 14, with homology - 12 Number of transcription units - 3, operones - 2 average op.length - 6.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 172 56 ## + Term 284 - 320 5.1 + Prom 243 - 302 2.0 2 2 Op 1 8/0.000 + CDS 425 - 3067 2263 ## COG0525 Valyl-tRNA synthetase + Term 3106 - 3153 10.0 + Prom 3199 - 3258 2.9 3 2 Op 2 . + CDS 3347 - 4633 1098 ## COG0285 Folylpolyglutamate synthase 4 2 Op 3 . + CDS 4630 - 5274 741 ## COG0637 Predicted phosphatase/phosphohexomutase 5 2 Op 4 4/0.000 + CDS 5336 - 6046 634 ## COG2003 DNA repair proteins + Prom 6088 - 6147 7.5 6 2 Op 5 22/0.000 + CDS 6185 - 7186 1072 ## COG1077 Actin-like ATPase involved in cell morphogenesis + Term 7221 - 7259 6.0 7 2 Op 6 . + CDS 7274 - 8134 911 ## COG1792 Cell shape-determining protein 8 2 Op 7 . + CDS 8136 - 8666 615 ## LGG_01267 rod shape-determining protein MreD 9 2 Op 8 22/0.000 + CDS 8681 - 9337 629 ## COG0850 Septum formation inhibitor 10 2 Op 9 . + CDS 9338 - 10135 754 ## COG2894 Septum formation inhibitor-activating ATPase + Term 10158 - 10203 -0.9 + Prom 10562 - 10621 3.2 11 3 Op 1 34/0.000 + CDS 10726 - 11382 791 ## COG0765 ABC-type amino acid transport system, permease component 12 3 Op 2 . + CDS 11394 - 12032 393 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 13 3 Op 3 . + CDS 11962 - 12135 107 ## 14 3 Op 4 . + CDS 12182 - 12841 635 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 13055 - 13100 1.5 Predicted protein(s) >gi|225002523|gb|ACIZ01000056.1| GENE 1 2 - 172 56 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no KTKATYTPTSNRAGSRSPHIDPVMITGYNAANAMIKRVAFFFSSDGMVGVNLERRP >gi|225002523|gb|ACIZ01000056.1| GENE 2 425 - 3067 2263 880 aa, chain + ## HITS:1 COG:BS_valS KEGG:ns NR:ns ## COG: BS_valS COG0525 # Protein_GI_number: 16079861 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Bacillus subtilis # 2 878 4 879 880 1155 61.0 0 MSDETLAPKYDHKAVEEGRYQEWLDEDVFKPSGDKKAKPYSIVIPPPNVTGKLHMGHAWD TTLQDIVIRQKRMQGFDTLWLPGMDHAGIATQAKVEAKLRKEGISRYDLGREKFVQKVWE WKDEFAKTIHGQWAKMGLSLDYSRERFTLDKGLNQAVRRVFVDLYNQGLIYRGEYIVNWD PQARTALSDIEVIHKDDKGAFYHVKYPFADGSGYIEIATTRPETMMGDTAVAVHPGDERY KDMVGKELILPLANRKIPIIEDAYVDPEFGTGAVKITPAHDPNDFQVGNRHDLKRINTMN DDGTMNENAGKYQGMDRFEARKAMVADLDKAGLLLKVEPIVHSVGHSERTGVQVEARLST QWFVKMKPLAEAAIKAQQEPDKKVTFVPERFEHTYLQWMENIHDWVISRQLWWGHQIPAW YNKQTGETYVGMEAPKDIENWKQDPDVLDTWFSSALWPFSTMGWPNTDAPDYKRYYPTDT LVTGYDIIPFWVARMIFQGLHFTHQRPFQYTLIHGLMRDEQGRKMSKSLGNGIDPMDVIE KYGADALRWFLITGNKPGQDTRFSYKQVEAAWNFINKIWNISRFVMMNLGDLDTPQQPDP STFDLSDKWLFAQLNETIKQVTDLSARFEFGEMGRTLYNFTWNVFADWYVEMSKEVLYGD DEQAKAAKRVNLAYALDQILRLLHPVMPFVTEKLWLALPHTGKSIVTASYPVANTAFENA DATSAMDAIIALIRGVRGIRKEAGAPLKTKVDILVKLTDPALKPIFEQNFDFIDRFVNSK AFTVGTDVAEPKMAGSAVITGATIFVPLNELIDLDEEKAKLTKDAKKLEQEIARIDKKLN NQGFLSKAPEAVVAEQRTKRSDFEDQLTSTKQRLEQLQRA >gi|225002523|gb|ACIZ01000056.1| GENE 3 3347 - 4633 1098 428 aa, chain + ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 1 423 1 423 427 263 38.0 4e-70 MNYTESVAYIHSFPRLAKTGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHV LEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTE FEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLTEVALDHQKLLGHTITA IAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRF TYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPAR LEKISDTPLIVIDGAHNPDGINGLITALKQLFSQPITVIAGILADKDYAAMADRLTAAFS TVYLVPVPGTPRALPEAGYEALHEGRLKDSWQEALAASLNDVPDQPIVITGSLYLASAVR QTLLGGKS >gi|225002523|gb|ACIZ01000056.1| GENE 4 4630 - 5274 741 214 aa, chain + ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 5 185 10 192 221 80 29.0 2e-15 MTATVIFDLDGTLVNTEALYLKSNVKAAAVLGLHRTEADFRPLVGSAGPSEAKIIADLVG ADHAAWFQQFSTQDVLDQIRSGADFVLPGADKTLQTLDQMGYRLALATSSAKHYVDVVLA ATGWVKRFDPILTGSDVTAHKPDPEIYHVMKTKLPETPAIVVEDTHVGVAAAEGAGLPVV MIPGIGQGPDHKATAILAAITDLPDWLQNHPTFA >gi|225002523|gb|ACIZ01000056.1| GENE 5 5336 - 6046 634 236 aa, chain + ## HITS:1 COG:BH3032 KEGG:ns NR:ns ## COG: BH3032 COG2003 # Protein_GI_number: 15615594 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Bacillus halodurans # 20 228 15 223 232 157 38.0 2e-38 MQSHSESGMTEGKTMADATEQPRERLLAHGPQALTDAELLQLIVRAGNQHYPVQEIVSEV LTTYPALRGLAEGDGDSLDHIRGLGAAKRASILAGVELGRRVMRRQSVRYGQIKNSEQLG KTMVSRFAGANQESMLILFLDVKNQIITEQIVAIGTVDSALADPRVVFREALKLSATNLI MVHNHPSGDPSPSQADRDTTTRFQLAAALLGMHLLDHLIIGRQSYYSFARDDPEFN >gi|225002523|gb|ACIZ01000056.1| GENE 6 6185 - 7186 1072 333 aa, chain + ## HITS:1 COG:lin1583 KEGG:ns NR:ns ## COG: lin1583 COG1077 # Protein_GI_number: 16800651 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Listeria innocua # 1 333 1 334 337 418 68.0 1e-117 MFGFGSKNIGIDLGTANTLVYVDGKGIVLNEPSVVAKNTQTEEVIAVGEEARDMIGRTPT NIVAIRPMKDGVIADYDTTAAMLKYFMQKALGNGSHPQVMICVPSGVTEVEKRAVIDAAK VAGARDAFVIEEPYAAAIGAGLPVMDPTGSMVVDIGGGTTDVATISLGGIVSSRSIRVAG DKFDEAIINHLRQNFNLLIGERTAEAMKIQIGSASVEKAADIDGMTVRGRDLLSGLPKTI DISATDIASAIHENVLDIITAIKETLEETSPEIAADVIDHGIVLTGGGALLKHLPDVISD ETKVPVFIAQDPLDCVAIGTGESLKNIDVLKKR >gi|225002523|gb|ACIZ01000056.1| GENE 7 7274 - 8134 911 286 aa, chain + ## HITS:1 COG:lin1582 KEGG:ns NR:ns ## COG: lin1582 COG1792 # Protein_GI_number: 16800650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Listeria innocua # 1 282 1 276 295 180 40.0 3e-45 MQKFFSNKKLIALMIALLVSLGLVAGSIYASNNRNTPPFIQRIANDVVGIGGRLVALPGD FARNGLDDINNLMDTFQENQRLKQQLDNLAQTKVQVQTLKRENKQLKQQLKLNGTLTDYA QISAAVILRTPSDWRNMVVINQGSAAGVKKGMPVMAGSGLIGRVVEVNRTSSKVEMLSTA NKSSDRIAAAVETKGEKEVNGIITGYDEKTGDLILGELNTDTAIKKGDEVVTSGLGGMTP KGLLIGKVASVKKDDYGLANTVYLDPAANLNDVTVVTVISRTIKGD >gi|225002523|gb|ACIZ01000056.1| GENE 8 8136 - 8666 615 176 aa, chain + ## HITS:1 COG:no KEGG:LGG_01267 NR:ns ## KEGG: LGG_01267 # Name: mreD # Def: rod shape-determining protein MreD # Organism: L.rhamnosus # Pathway: not_defined # 1 176 1 176 176 271 100.0 9e-72 MLNEKHFTGHWWIFLLLLLLLLIDGSLASVLAQWIMQPNFMGTPQLTLLGLVMVTLLVPQ EKYITWIAALIGLLFDSFYTGILGINALLFALVIYVVRQIRPYIPHTPIFVGMVYIIALL LYGVASYAANHFIGYGSASVVMLIANHLGPGLTVNLILFVIVYGPLHRLLMNLAEE >gi|225002523|gb|ACIZ01000056.1| GENE 9 8681 - 9337 629 218 aa, chain + ## HITS:1 COG:BS_minC KEGG:ns NR:ns ## COG: BS_minC COG0850 # Protein_GI_number: 16079852 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor # Organism: Bacillus subtilis # 4 213 9 221 226 104 30.0 1e-22 MDSVVLKGRNDSLALHLQDTADFTQIIQTLKTLLGKLYEETPTGDVSYRLETGNRLLTEE QLAQIQAVFEDYPRFSINGITSAVVDKAVVADMVTAKMTHRIGGVVRSGQTIDVMGDVLF LGDLHAGASLCASGNVFVMGKVSGVIQAGSQGDTRAVVVGDLQGASQVRIADVIEIVADH YDPVKPVAYLSELHTMAHTKLAELANLRPRLFKQMEAM >gi|225002523|gb|ACIZ01000056.1| GENE 10 9338 - 10135 754 265 aa, chain + ## HITS:1 COG:lin1579 KEGG:ns NR:ns ## COG: lin1579 COG2894 # Protein_GI_number: 16800647 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor-activating ATPase # Organism: Listeria innocua # 1 260 1 259 266 343 66.0 1e-94 MGTALVVTSGKGGVGKTTTSANIGTALALQGKRVVLLDLDIGLRNLDVVMGLSNRIIYDI VDVATGRAKLHQALIKDKRFDDLLYLLPAAQNAEKDALEPDQVVEIVEQLRPDFDFIILD SPAGIEQGFRNATGAADGAIVVTTPEISAVSDADRVVGLLEQRDMPLKPRLIINRIRQNM LADGRSMDIDEITSHLGLDLLGIIVDDDGVIESSNKGEAIVMDPDDLASKGYRNIARRLL GDSVPLMDIRLKKQGFWSKLFHRHH >gi|225002523|gb|ACIZ01000056.1| GENE 11 10726 - 11382 791 218 aa, chain + ## HITS:1 COG:lin1851 KEGG:ns NR:ns ## COG: lin1851 COG0765 # Protein_GI_number: 16800918 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 1 218 1 213 213 225 65.0 5e-59 MTYIFQILPALLSGVKMTLGIFAITLVGAIPLGLILSVGLIPKPKSLLGKAGKSLLEGYV WVFRGTPLLLQLMFIFYGLPIIGIVFDRFSAALVAFILNYAAYFAEIFRGGFGAIDEGQF EASTVLNMTRWQALRFVVIPQVVKIVLPSIGNEVINLVKDSSLVYVIGLGDLLRAGNIAS ARDVTLLPLVLVGVIYLLLTLILTFLQKRIEAAFSYYR >gi|225002523|gb|ACIZ01000056.1| GENE 12 11394 - 12032 393 212 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 208 1 215 245 155 40 1e-37 MLELKNISKAFNGRPVLKDVNVTIEDGKTLAIVGPSGAGKTTLLRIISGLESADGGTMIW NGQPTTAQALRKQGVIGVVFQNFELFPNLSVMRNITLAPTLQGVDQQKADATAKKLLNQL ELTDQAQAYPYSLSGGQKQRVAIARALALNPQILLYDEPTSALDPMLRDNVAAMVNQFKV SGMTQVVVTHDMDFAQSVADTTYHVGKGGDGQ >gi|225002523|gb|ACIZ01000056.1| GENE 13 11962 - 12135 107 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTWTLPKVLQTRLITLAKAVMVNETANDNGRHGVFDHGRYRNQWMRARNSRQFLATH >gi|225002523|gb|ACIZ01000056.1| GENE 14 12182 - 12841 635 219 aa, chain + ## HITS:1 COG:lin1849 KEGG:ns NR:ns ## COG: lin1849 COG0834 # Protein_GI_number: 16800916 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 1 218 50 267 271 233 55.0 3e-61 MGFRQKNGQLAGYDIDLAKAVFKRYGIKADFQTIDWSMKETELKNQTIDLIWNGYSVTPE RKAKVAFSNDYLINHQILVTKTKSQINTLKDMKGKTLGVQTGSSGAFDLDAQPKLLKNMI ANKTPILYDTFNDAFIDLDAGRIQGILMDEVYARYYIAHKPDPASYHIIGDSFPPEEFAV GMRKSDHVLREKINAGLKALKADGTIAKLQKKWFGKVEQ Prediction of potential genes in microbial genomes Time: Wed May 25 19:50:07 2011 Seq name: gi|225002522|gb|ACIZ01000057.1| Lactobacillus rhamnosus LMS2-1 contig00060, whole genome shotgun sequence Length of sequence - 2316 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 334 - 393 2.9 1 1 Tu 1 . + CDS 462 - 1895 1240 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 1911 - 1963 2.5 - Term 1922 - 1953 4.1 2 2 Tu 1 . - CDS 1977 - 2096 86 ## - Prom 2124 - 2183 4.9 Predicted protein(s) >gi|225002522|gb|ACIZ01000057.1| GENE 1 462 - 1895 1240 477 aa, chain + ## HITS:1 COG:BS_ywnE KEGG:ns NR:ns ## COG: BS_ywnE COG1502 # Protein_GI_number: 16080712 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Bacillus subtilis # 10 477 11 482 482 384 42.0 1e-106 MWLGLIVGGLYIINAFIAIVTVFRSHRDISAVWAWLLVLLLLPFVGFLIYFVFGRKLRAD RMQDLMTQRLLGINDLVVQQQEALAAGQPLIGTPGSGGVSELVRTLLRADDALVTTHNEV QVLSLREAFFKQLFEDIGLATEHIHIEAYTIQPDAVGRQLRDLLIEKAQAGITVRVLYDT FGSHGLPISFWKGLTAAGGQVERFVATKLGRWNPRINFRNHRKLIVIDGHLAYLGGFNLG KEHRGLPTLRDTQLRIQGKAVAVIQARFLMDWNGTSKRQQVKDVDVLFREPVVTGNTTMQ IVAGGPGQQVEAIKLGYLGLINQAKRSIWIESPYFVPDDSLLDALTIAANAGVDVRIMVP KKTNQSLMAKASQFYLNQVVANGGQAFLYEEGFLHAKTIVVDGKYVSTGTANFDIRSFKL NFEVAAFLYDHHLGKTFQKLFLADMERAMPYTQKVIKAKKRPARLAEELSRLLAPIL >gi|225002522|gb|ACIZ01000057.1| GENE 2 1977 - 2096 86 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQKKKKSKFQKMTIISAWVMIIITVLGVVLTALASLQII Prediction of potential genes in microbial genomes Time: Wed May 25 19:50:32 2011 Seq name: gi|225002521|gb|ACIZ01000058.1| Lactobacillus rhamnosus LMS2-1 contig00061, whole genome shotgun sequence Length of sequence - 68680 bp Number of predicted genes - 65, with homology - 62 Number of transcription units - 27, operones - 12 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 135 - 194 2.8 1 1 Tu 1 . + CDS 248 - 580 227 ## LGG_01276 hypothetical protein + Term 611 - 649 6.0 + Prom 619 - 678 3.8 2 2 Op 1 29/0.000 + CDS 756 - 1187 428 ## COG2001 Uncharacterized protein conserved in bacteria 3 2 Op 2 . + CDS 1190 - 2131 542 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 4 2 Op 3 . + CDS 2145 - 2510 258 ## LGG_01279 cell division protein FtsL 5 2 Op 4 4/0.000 + CDS 2507 - 4651 1782 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 6 2 Op 5 28/0.000 + CDS 4666 - 5631 851 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 7 2 Op 6 4/0.000 + CDS 5660 - 7039 1204 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 8 2 Op 7 3/0.000 + CDS 7040 - 8131 950 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 9 2 Op 8 25/0.000 + CDS 8137 - 8991 586 ## COG1589 Cell division septal protein + Prom 9006 - 9065 4.2 10 2 Op 9 35/0.000 + CDS 9104 - 10441 1283 ## COG0849 Actin-like ATPase involved in cell division 11 2 Op 10 . + CDS 10466 - 11731 1274 ## COG0206 Cell division GTPase 12 2 Op 11 12/0.000 + CDS 11749 - 12204 449 ## COG1799 Uncharacterized protein conserved in bacteria 13 2 Op 12 7/0.000 + CDS 12217 - 12504 136 ## COG0762 Predicted integral membrane protein 14 2 Op 13 6/0.000 + CDS 12510 - 13289 1338 ## PROTEIN SUPPORTED gi|199598147|ref|ZP_03211569.1| Cell division protein, S4-like domain + Prom 13340 - 13399 4.2 15 2 Op 14 6/0.000 + CDS 13460 - 14248 853 ## COG3599 Cell division initiation protein + Term 14435 - 14469 5.1 + Prom 14396 - 14455 2.9 16 2 Op 15 . + CDS 14491 - 17277 2526 ## COG0060 Isoleucyl-tRNA synthetase 17 2 Op 16 . + CDS 17290 - 17514 277 ## COG1278 Cold shock proteins + Term 17664 - 17708 6.5 - Term 17649 - 17700 6.0 18 3 Tu 1 . - CDS 17736 - 18641 908 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 18771 - 18830 3.7 + Prom 18729 - 18788 6.4 19 4 Tu 1 . + CDS 18817 - 20253 1248 ## COG0477 Permeases of the major facilitator superfamily + Term 20305 - 20344 5.0 - Term 20293 - 20331 8.6 20 5 Op 1 4/0.000 - CDS 20382 - 21569 1209 ## COG3853 Uncharacterized protein involved in tellurite resistance 21 5 Op 2 . - CDS 21575 - 22237 600 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein - Prom 22420 - 22479 3.6 + Prom 22261 - 22320 3.8 22 6 Op 1 . + CDS 22449 - 22994 521 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 23 6 Op 2 . + CDS 22981 - 23241 294 ## LGG_01298 hypothetical protein 24 6 Op 3 . + CDS 23318 - 24028 778 ## COG0775 Nucleoside phosphorylase 25 6 Op 4 . + CDS 24040 - 25203 952 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes + Prom 25256 - 25315 3.3 26 7 Tu 1 . + CDS 25497 - 25838 455 ## LGG_01302 hypothetical protein + Term 25853 - 25905 3.2 27 8 Tu 1 . + CDS 26055 - 28328 1512 ## COG0178 Excinuclease ATPase subunit + Term 28349 - 28381 -0.8 + Prom 28339 - 28398 6.5 28 9 Tu 1 . + CDS 28447 - 29577 913 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + Term 29616 - 29660 14.6 + Prom 29949 - 30008 5.8 29 10 Op 1 . + CDS 30035 - 30697 676 ## COG0406 Fructose-2,6-bisphosphatase 30 10 Op 2 . + CDS 30743 - 31414 782 ## LGG_01307 tPR repeats containing protein 31 10 Op 3 . + CDS 31401 - 33866 2143 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 32 10 Op 4 . + CDS 33872 - 35089 1001 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases + Term 35163 - 35201 -0.6 - Term 35152 - 35187 -0.6 33 11 Tu 1 . - CDS 35219 - 36169 794 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 36193 - 36252 5.7 - Term 36348 - 36389 1.6 34 12 Op 1 7/0.000 - CDS 36421 - 38103 1128 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 35 12 Op 2 . - CDS 38108 - 38320 298 ## COG5503 Uncharacterized conserved small protein - Prom 38555 - 38614 4.0 + Prom 38512 - 38571 3.9 36 13 Op 1 . + CDS 38815 - 39267 311 ## LC705_01330 hypothetical protein 37 13 Op 2 . + CDS 39290 - 39589 273 ## LC705_01331 hypothetical protein + Term 39594 - 39634 7.1 - Term 39579 - 39625 10.1 38 14 Tu 1 . - CDS 39631 - 40185 574 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 40208 - 40267 4.0 39 15 Tu 1 . - CDS 40445 - 40612 79 ## + Prom 40248 - 40307 4.1 40 16 Op 1 . + CDS 40551 - 40640 93 ## 41 16 Op 2 . + CDS 40698 - 41513 610 ## LGG_01319 ATPase + Term 41538 - 41581 11.7 + Prom 41649 - 41708 5.5 42 17 Op 1 28/0.000 + CDS 41774 - 42886 919 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 43 17 Op 2 24/0.000 + CDS 42889 - 43866 997 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 44 17 Op 3 30/0.000 + CDS 43884 - 45524 1606 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 45 17 Op 4 . + CDS 45527 - 46930 786 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 46969 - 47012 5.4 + Prom 47090 - 47149 7.8 46 18 Op 1 1/0.400 + CDS 47174 - 48064 961 ## COG0039 Malate/lactate dehydrogenases 47 18 Op 2 2/0.000 + CDS 48054 - 48335 393 ## COG4476 Uncharacterized protein conserved in bacteria 48 18 Op 3 1/0.400 + CDS 48338 - 49132 942 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family + Term 49162 - 49198 2.1 + Prom 49248 - 49307 6.9 49 19 Tu 1 . + CDS 49385 - 51229 1586 ## COG1217 Predicted membrane GTPase involved in stress response + Term 51237 - 51275 4.6 + Prom 51386 - 51445 5.6 50 20 Op 1 4/0.000 + CDS 51493 - 52644 906 ## COG0772 Bacterial cell division membrane protein 51 20 Op 2 . + CDS 52637 - 56074 2986 ## COG1038 Pyruvate carboxylase 52 20 Op 3 2/0.000 + CDS 56092 - 56439 282 ## COG4471 Uncharacterized protein conserved in bacteria 53 20 Op 4 14/0.000 + CDS 56408 - 56992 428 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 54 20 Op 5 4/0.000 + CDS 56985 - 57488 375 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 55 20 Op 6 . + CDS 57466 - 58554 428 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 58583 - 58628 5.0 56 21 Tu 1 . - CDS 58533 - 58682 105 ## - Prom 58875 - 58934 2.3 + Prom 58572 - 58631 2.7 57 22 Op 1 4/0.000 + CDS 58652 - 59317 533 ## COG1555 DNA uptake protein and related DNA-binding proteins 58 22 Op 2 4/0.000 + CDS 59314 - 61518 969 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 59 22 Op 3 . + CDS 61505 - 62566 857 ## COG1466 DNA polymerase III, delta subunit + Term 62622 - 62665 9.4 - Term 62607 - 62655 13.1 60 23 Tu 1 . - CDS 62679 - 62933 406 ## PROTEIN SUPPORTED gi|199598192|ref|ZP_03211614.1| Ribosomal protein S20 - Prom 62985 - 63044 7.6 + Prom 63006 - 63065 6.5 61 24 Tu 1 . + CDS 63182 - 63451 455 ## PROTEIN SUPPORTED gi|199598193|ref|ZP_03211615.1| Ribosomal protein S15P/S13E + Term 63459 - 63501 8.6 + Prom 63477 - 63536 4.8 62 25 Tu 1 . + CDS 63569 - 64258 632 ## LC705_01353 hypothetical protein + Term 64359 - 64406 6.2 + Prom 64384 - 64443 5.2 63 26 Op 1 . + CDS 64558 - 66240 1540 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Prom 66242 - 66301 7.5 64 26 Op 2 . + CDS 66330 - 67226 797 ## LC705_01355 hypothetical protein + Term 67298 - 67347 2.1 + Prom 67252 - 67311 4.8 65 27 Tu 1 . + CDS 67447 - 68637 1401 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|225002521|gb|ACIZ01000058.1| GENE 1 248 - 580 227 110 aa, chain + ## HITS:1 COG:no KEGG:LGG_01276 NR:ns ## KEGG: LGG_01276 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 110 1 110 110 130 100.0 2e-29 MVLLALGLPILVWLLVVAAVVYFDFHGGSWFFLLTMVNLWAIFELTFTKSPNFIWVILFT AMVIALILVVWQVIREYDLIIHRYWRMLTRILSLATTCWWLSGIFIYFMG >gi|225002521|gb|ACIZ01000058.1| GENE 2 756 - 1187 428 143 aa, chain + ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 143 1 143 143 187 57.0 5e-48 MLMGEFERSIDAKGRLIIPAKFREQLGASFVLTRGMDGCLFGYPIAEWDKLQAKLATLPL AKKDARTFTRFLFSAATECEIDKQGRINIPKPLFKHAALKKDCVLVGVNTRIEVWDAERW QQFADTAEEDFDDISENLTDFGL >gi|225002521|gb|ACIZ01000058.1| GENE 3 1190 - 2131 542 313 aa, chain + ## HITS:1 COG:BS_ylxA KEGG:ns NR:ns ## COG: BS_ylxA COG0275 # Protein_GI_number: 16078578 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Bacillus subtilis # 4 310 2 309 311 358 60.0 6e-99 MTEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIA AVKRHFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRF DAPLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTT FQLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISV ITFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPHYQLVNRKPILPSAAELAENHRA HSAKLRVIEKIRN >gi|225002521|gb|ACIZ01000058.1| GENE 4 2145 - 2510 258 121 aa, chain + ## HITS:1 COG:no KEGG:LGG_01279 NR:ns ## KEGG: LGG_01279 # Name: ftsL # Def: cell division protein FtsL # Organism: L.rhamnosus # Pathway: not_defined # 1 121 1 121 121 228 100.0 4e-59 MLESTARPLVQQPAPKPVHKSAPAPAPHTHIAFSGFEKTMMFACGVLATVVCVVCLFMQN RLSNTQRQYEDLQAQIMKQSQATANLKQEIGELSNSERLDAFAKAHGFKVINGNIRRVDN Q >gi|225002521|gb|ACIZ01000058.1| GENE 5 2507 - 4651 1782 714 aa, chain + ## HITS:1 COG:lin2145 KEGG:ns NR:ns ## COG: lin2145 COG0768 # Protein_GI_number: 16801211 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 39 706 29 707 752 513 43.0 1e-145 MKIFKSKRSTNAHPARNRKFFGIGLIGFTLLVLGGFVLRFSFVATIGEVDSNNLAKQRQK QYQTDTVLQAQRGAILDRSGNVIAEDSNTYTIYAILDKQNKNGDKPDYVTNKAKTAKILS RYLAIGEDKVLARLNPSKNLFQVEFGRPGTKLSLAIKKQIEAEKLPGIHFRETPSRLYPN GVFASHVIGLAQAQDNGGGLTGVMGLEKQFNTVLTGTNGYRRSETDAYGYKLPNAKTKAK APVNGGSVYTTLDSGLQAYLETLMTDVQTKYEPKGMTAVLMNAKTGRILAATQRPTFDAS TGEGLGDMWRDSLVEDNYEPGSVMKIMTLAAAIQSGKYHPNEYFQSGSVKLDGGTVNDWR TGGWGSIPLSKAFPLSSNVGMVKIEQEMGAGIWKSYLDKFKFGQKTGITLPGETSGRISF QRPLDQAITAFGQGIEVNVMQMMQAISAVANDGKMLKPQIVSKVVNKNGKATVYKPEVVG QPISKETAARVIDAMRHVVNDEDGTGVAYKMPGVDLAVKTGTGQIASAQGGYLTGDSNYT FSVAGIAPASNPKYVLYVAMKQPQKMTEPAESILASIFKPMMQRALDTTANSTVSGETNT AEVPAVTNAALASAQDTVKKAGFDVATIGTGNKIVQQLPASGTKALRDSRVLLLTNGAMT MPDLTGWSKSDVLKFVQLTGKKFKLVGDGFVVRQSIAKGTLLGNASGTIEFKQQ >gi|225002521|gb|ACIZ01000058.1| GENE 6 4666 - 5631 851 321 aa, chain + ## HITS:1 COG:lin2143 KEGG:ns NR:ns ## COG: lin2143 COG0472 # Protein_GI_number: 16801209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 1 315 1 317 324 298 53.0 6e-81 MQLAQMLIPMVSAFAITIMFMPLFIGYMRYKKEGQVIREEGPSWHEKKSGTPTMGGLIFI AAIIISAIWVSIWQHQLTLSVWISLFILVLYGLLGFYDDFQKLVHHRNEGLKAWQKLAGQ ILGAVIFLIAYFHEGFDHTLWVPVLGNVNATWFYVIFVVFWLVGFSNAVNLTDGLDGLVA GQTTISFATYAVIAVREGRVDVLIICLVTVGAMLGFLMFNHKPAQIFMGDLGSLALGGML AVVAILLHREWSLLLIGIIYVIETASVILQVASFKLTGKRIFLMSPIHHHFEMKGWSEWQ IDLTFWLVGLIASCVYLVFFL >gi|225002521|gb|ACIZ01000058.1| GENE 7 5660 - 7039 1204 459 aa, chain + ## HITS:1 COG:lin2142 KEGG:ns NR:ns ## COG: lin2142 COG0771 # Protein_GI_number: 16801208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Listeria innocua # 1 455 1 454 455 462 54.0 1e-130 MKNISDYRNKKVLVLGLAKSGVNAARLLHKLGALVTVNDKKQFDDNKEAQELLADGMRVI TGRHPVELLDEHFELMVKNPGIPYSNPMVQRAQELGLPIITEPELAFQVSEAEWIGITGT NGKTTTTTLIGLMLNQQWPHHAFDAGNIGIPVSQVAQKAGKDDTIVAELSSFQLCGIKTL HPHIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHQLAKQSQAQ IVPFSRKQAAGARASLIDGWLTFDGDKIMPASDLQIPGLHNIENALAAIAAAKLKGVSDD AIREVLRTFSGVKHRIQYLETINGRRVYNDSKATNVEAATVALNAFQQPIVWLAGGLDRG LPMDALTPLVKKHVKSMVVFGQTAPLMAKIAKEAGVPVQKTENVMTAVPLAYEASRPGDV ILLSPAAASWDQYPNFEVRGDDFIKAVHSLQQNLESEGH >gi|225002521|gb|ACIZ01000058.1| GENE 8 7040 - 8131 950 363 aa, chain + ## HITS:1 COG:lin2141 KEGG:ns NR:ns ## COG: lin2141 COG0707 # Protein_GI_number: 16801207 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Listeria innocua # 1 359 1 362 363 356 50.0 3e-98 MRLVISGGGTGGHIYPALALIEALKAEGKLDDVLYVGTQRGLESRIVPATGLKFATLDLQ GFKRSLSLSNVTTVKKFIGSLGQAKKLLRDFKPDIVVGTGGYVSGAILYAAARLHIPTVI HESNSVAGVTNKFLSHFVDRVAIVFPEVASSFPAKKVVVTGNPRAQQVAGLKPNDRLKDF GLDPHKQTLLIFGGSRGAPKINAAAVAALPIWAKADFQVLFATGRSHYDAINAGLPALPA SIKVVPYIDDMPSILPDIGLLISRAGATTLAEITALGIPAILIPSPNVTHHHQYLNAQSL TKKGAALTITEPELNQNFPQRVVTLMEDDAKRAAMAQASKRLGVPDASDQLIAVMTTLLT KRG >gi|225002521|gb|ACIZ01000058.1| GENE 9 8137 - 8991 586 284 aa, chain + ## HITS:1 COG:lin2140 KEGG:ns NR:ns ## COG: lin2140 COG1589 # Protein_GI_number: 16801206 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Listeria innocua # 42 275 14 248 270 119 30.0 6e-27 MAWLRKKEQQSDPLTPWQQYQARQQQTPRHDRRQKPKLDVNLPKIQTLRRRKLVKNLVLI LLPLLLLLGVFGYFASPLSKVGLVSVQGVTTVPDQQVINATKLSDDDLMLSVAFHKNAIA QRVQKSLPEIKTASLTIKGFNRIIIKTSEYQTVGYVYQKHAYHKILVTGEVLAAGTQTPV TTYPVFSGFTAKELPQMITLLKQFPAAIRRDISEIDASRGDANPNQIALNMNDGYRIIAD TRTIAKKIKYYPAIVSQVKQKGVVDLEVGAFWRPYSSSEKSSND >gi|225002521|gb|ACIZ01000058.1| GENE 10 9104 - 10441 1283 445 aa, chain + ## HITS:1 COG:L0207 KEGG:ns NR:ns ## COG: L0207 COG0849 # Protein_GI_number: 15673852 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Lactococcus lactis # 1 445 1 456 456 382 44.0 1e-106 MDNQGIYVGLDIGTTSIKVIVAEAVQGQMNVIGVGSQRSEGVSRGVIVDIDKAVAVIQAA VAQAEDKANIKIDRVVAGIPANMLQIEQVSGMIAVGEENKEISDKDVRSVAAAALVRNLP PERETLSLVPTEFIVDGFDDIKDPRGMLGVRLEMRGIMLTVPKTVIHNTKKAIEKAGLRV GGLVISPLAIGRLALTDGEQDFGTVLIDMGGGQSTAAVIHDRKLKFTSVDQEGGEYITKD ISVVLNTSFTDAEKLKREYGNADSLATSEDETFPVTVVGKHDPAMISEKYLSEIIEARVA QIFKRLKKALDAVNALELPGGIVITGGTTALPGVTELAQDILERPVKRFIPEDMGLRHPS FTEGLALIKYAAEMTDIEMLVSSVLPTPFMVDGAQMPTQPARPQPETPAAPENQRSAKRK PDKQPEKAKSKEPSPLRRFFGNFFE >gi|225002521|gb|ACIZ01000058.1| GENE 11 10466 - 11731 1274 421 aa, chain + ## HITS:1 COG:SP1666 KEGG:ns NR:ns ## COG: SP1666 COG0206 # Protein_GI_number: 15901501 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 418 1 419 419 382 59.0 1e-106 MDFQMDAQSEKGANIKVIGVGGAGGNAINRMIAEDVKGVEFIAANTDLQALNASNAETKI QLGPKLTRGLGAGSNPEIGQKAAEESEEAIGAALQGADMIFVTAGMGGGSGTGAAPIVAK IAKDQGALTVGVVTRPFTFEGPKRAKNATEGIAQLKEHVDTLVIIANNRLLEIVDKKTPM LEAFHAADNVLRQGVQGISDLITSPGYVNLDFADVKTVMANQGSALMGIGSATGENRTVE ATKKAISSPLLEVNISGAKQVLLNITGGPDLSLFEAQDASQIVADAAKDDVNIIFGTSIN EELGDEVVVTVIATGIEEEDQRRETTRRPAAANRNTDQTQSNGSYRPTFGGHEQSADQAP KNDDPFGNWDLRREPSKRQTPSADDMNNVKKKDFDIFENQTNADDAGTDDQPPFFKQRRR Q >gi|225002521|gb|ACIZ01000058.1| GENE 12 11749 - 12204 449 151 aa, chain + ## HITS:1 COG:BS_ylmF KEGG:ns NR:ns ## COG: BS_ylmF COG1799 # Protein_GI_number: 16078603 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 6 143 1 144 149 105 42.0 3e-23 MAFGKLGEKFNNFFAMDDEDEYQDQEDEQTQAAPKEPSNHGQYRSNKVVSMNSPVGKTAK IVVYEPRIYSDAKEIGSHLLNNRAVVINFDRIEADDARRIVDFLTGTVFAINGEIKRIGE SIFLVTPANFEIDGSLASTIDSDGLNLSSQP >gi|225002521|gb|ACIZ01000058.1| GENE 13 12217 - 12504 136 95 aa, chain + ## HITS:1 COG:BH2548 KEGG:ns NR:ns ## COG: BH2548 COG0762 # Protein_GI_number: 15615111 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Bacillus halodurans # 14 88 10 84 84 64 46.0 4e-11 MFNFLYALFRVGDWAIYLYMIMVFIYILISWFPNAQGTAIDRFLGRWVDPFLSIFRRIIP AIGGLDLSPILAFFVLSLIKFGWSRLFLILVQIIG >gi|225002521|gb|ACIZ01000058.1| GENE 14 12510 - 13289 1338 259 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598147|ref|ZP_03211569.1| Cell division protein, S4-like domain [Lactobacillus rhamnosus HN001] # 1 259 1 259 259 520 100 1e-146 MDAIYQHFRKDEAALIDHFAELIETARTEYRAVLTDFTDPRQRLIAASLINAHDDMKLVH FGGYPHAERQRLIFAPDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLNAGLDRDV FGDIVTDGRTWQFFVAAHMEDWVMSNITKIGRVGVHFTDYPLDAAVTPENDWEPISFSVS ALRLDAIVAHGFNMSRQRAKMLIQAGKVRLNFGENDAPDAEVATSDIISVRGFGRLRLDA ILGESKKGKLRVSAAVIHK >gi|225002521|gb|ACIZ01000058.1| GENE 15 13460 - 14248 853 262 aa, chain + ## HITS:1 COG:lin2128 KEGG:ns NR:ns ## COG: lin2128 COG3599 # Protein_GI_number: 16801194 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 1 182 1 160 175 121 42.0 1e-27 MALSPLDIHNKEFSSKMRGYDKDEVNDFLAQIVKDYSSLIKDNEGLKKELADAKEKVRYF TDMKEALNQSIIVAQESAEKVKNSAHQEADLIKQQAQQDAQGILNRAKADADQKVHQAQA QTEQTLHDAELKRQNISVQTEDLKRQSRVFRQRLQVMLESQLEVVKSPEWKELLSSSPEA ADTTDPSQEALDNSQAGFVNSSGAVSGADAYTEIIFPDDQSATSESATATPAPVDSDHSE SEATTSATTSADTDVTTDQDAQ >gi|225002521|gb|ACIZ01000058.1| GENE 16 14491 - 17277 2526 928 aa, chain + ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 927 1 931 932 1273 64.0 0 MKIKDTLNMGKTTFPMRAGLPKNEPIWQKKWDEDHVYEQRQKLNEGKPTFMLHDGPPFAN GNIHMGHALNKISKDIIVRYKSMNGFRAPYVPGWDTHGLPIEQQLAKQGVKRKEMSMTDY RELCRQFAMKEIDKQRTDFKRLGVMGDWEHPYITLQHAYEASEIRVFGAMAKKGYIYHGL KPVYWSWSSESTLAEAEIEYHDDKSPSIYVAFPVVDGKGILDQDTSLVIWTTTPWTIPAN YGIAVNPRFDYVQVQVGEHKYVVAAELLDRVAEEVGWEQPKILKTFKGTEMDKMTAKHPL YDRTSLVMNADHVTLDAGTGLVHTAPGHGEDDYKVGMKYGLPVISVVDAKGYLNENAPGF EGVFYDDANKLVTKALDEKGALLKLDFFTHSYPHDWRTKKPVIFRATTQWFASIEAFRDQ ILKAIDTVDFKPSWGKTRLYNMIRDRGDWVISRQRAWGVPLPIFYAEDGEPIIEEATINH VADLFGKYGSNVWFEREAKDLLPDGYTNPHSPNGKFTKEKDIMDVWFDSGSSHQAVLAQR PELSFPADLYLEGSDQYRGWFNSSLITSVAATGIAPYRGILSQGFTLDGKGRKMSKSLGN TIVPSTIEKQFGAEIIRLWVATVDSSSDVRVSVDNFAQTSEAYRKIRNTLRFMVANTGDF DPEKDAVAYDQLGSVDRYLLVRLNQVIAKVKEAYDAYDFATVEKTISSFLVNDLSAFYLD VAKDVVYIEAANDPKRRSMQTVMYTALLDLTKLLTPILPHTAEEVWPYLKQKQAYAALSD MPDVTHFADEDQLLDIWAAFMDFRSEVQKALEVARDNKVIGKSMEAAVTVYPTEPVRDML DDVEANVMQLLITSHFEVAPLEAKAPENAEQFEDMAVVVEHAKGTVCPRCRMVRTDIGTD PKLPELCSRCAAIVEANYPEAAANGFDK >gi|225002521|gb|ACIZ01000058.1| GENE 17 17290 - 17514 277 74 aa, chain + ## HITS:1 COG:BH3610 KEGG:ns NR:ns ## COG: BH3610 COG1278 # Protein_GI_number: 15616172 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Bacillus halodurans # 1 63 1 63 65 84 68.0 7e-17 MQGRVKNFNVDKGYGFIEAEGQPDIFVHFSAINESGFKSLTPGEQVDFVIVEGPRGPQAA NVTIHHEPDTEDHA >gi|225002521|gb|ACIZ01000058.1| GENE 18 17736 - 18641 908 301 aa, chain - ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 5 299 3 301 302 300 57.0 2e-81 MKHSKLLVGLTVALTATLVLTGCGSKSASSSSSSSSAPAKQSKILAVGSTALQPLVEQAA KQYQTDNPKAEITVQGGGSGAGLSQVAAGSVTIGNSDIFAQEKKDLKADDLVDHQVAVVA IAPVVNKDAGVKNISTQQLIDIFQGKITNWKDVGGKDQQIVLINRAQGSGTRATFEQFGI KTDKVKTSQEQDSSGTVYQMVSSTPGAISYLAFSAIKDGVQKLALDKVQPTDKNVTTNTW KIWAYEHMYTKGKPNASTAAFINYIQSKNVQKTLVPKLGYIPITKMTVARTYDGKIEEVN K >gi|225002521|gb|ACIZ01000058.1| GENE 19 18817 - 20253 1248 478 aa, chain + ## HITS:1 COG:L184516 KEGG:ns NR:ns ## COG: L184516 COG0477 # Protein_GI_number: 15672362 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 18 469 8 462 467 340 44.0 4e-93 MKNYIEDQKVQKNRWWIITAIGMFTIMSTLDGSIVNIALPVMSRDLNIPMNQAEWVVSIY LMMICGLLLFFGKLGDSIGKIKVFRIGMVLFLIGLLFAGFNNSLALLLAARIVQATGASM TMANNNGIVTEIFPMNERGKALGLIGSFVSIGAIAGPGIGGLILGQLPWGYIFWINIPIG IVALILGTVVLPKDLPSKRVPIDWSGFISFLAYILTLFMGIFLGQERGFTDPLILGLFVI AVIALAAFVQIERHKNDPLVSFKLFSNSAFTLSLLSAFFIFVTNFFFNVISPFYLQNARG LSPEKAGYLLMIFPIVQVIVAPVAGSIADRIGPYRITMVGLLFIVGSQIGYALFNLQTSF VFVALMIGLVGFGNGLFQAPNNTVVMSSVAPRDLGIAGGMNALARNLGMVVGISSATTVL FSSMSHTAGRKVTTYLTGQPNVFIAGMHVSFWVATALCCLALALTGYRMWQMRTQTQA >gi|225002521|gb|ACIZ01000058.1| GENE 20 20382 - 21569 1209 395 aa, chain - ## HITS:1 COG:lin2081 KEGG:ns NR:ns ## COG: lin2081 COG3853 # Protein_GI_number: 16801147 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tellurite resistance # Organism: Listeria innocua # 11 377 27 396 399 338 60.0 2e-92 MSDDKQTNLTDDLLADPFSTATDANAEPNIPEATTAKPKLNPEQEAKARDLASKIDVTKG ETVLNYGADAQKQLGVFSQNMLTKVQSQDTGAVGDALTSLMTRLNEANPDELKAENNNIF RKIFGRVKRSIYEITAKYQKIGAQIDTIANRLETSQQGLLNDNKLLDELYDQNKAYFDAL NIYIEAANLKIAELNEKTIPEAAKAAEAANDQMAIQQVNDLKQFASRLEKRAYDLQLARQ ITIQQAPQIRLIQNTNQALAEKIQASVNTAIPLWKNQVAIALTLLRQKNAVTAQRQVSET TNDLLKKNSEMLKISSIETAKENERGVVDIETLTQTQNDLIDTLKQTLQIQQDGRLKRQN AEKQLVQMEGELKQQLLNYTHGSMNEQNPKDVTPH >gi|225002521|gb|ACIZ01000058.1| GENE 21 21575 - 22237 600 220 aa, chain - ## HITS:1 COG:L175712 KEGG:ns NR:ns ## COG: L175712 COG4915 # Protein_GI_number: 15673319 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Lactococcus lactis # 67 208 67 208 208 75 27.0 1e-13 MATSKRIRTWRIILWAAMGAVLGALSGRWLIAIFVGTVFAFARFIGELSRPKPKSASLPS LDPKMAEHYAASGLSEEEIKLFRKTMADLAEQIRTIEALTQQVPKLRALTLNTDLVDLLH AYFEALVQAPQRLTDAGTFVYQQVPNLLDLMQKYAQITHHEVKTADTYETLDKAFETMTN MAGKIRTDYQAFIKDDLADLDSDVRLAKKHLEPEKTHETE >gi|225002521|gb|ACIZ01000058.1| GENE 22 22449 - 22994 521 181 aa, chain + ## HITS:1 COG:lin2079 KEGG:ns NR:ns ## COG: lin2079 COG0494 # Protein_GI_number: 16801145 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Listeria innocua # 1 174 4 178 185 130 40.0 1e-30 MEEKPIAQQRLFTGHLVAVDELTVKLDNQQTAKREIVRAHPAAGVLALKDQRALFVSQFR STVGQMTLEIPAGKIAPGEMPLAAAQRELNEETGMQARDWQPLASYFQSLGFSDATMALF LARHVTTAEHHLDQDADEFVQHRWLTLSEAQQAVDDGQICDSKTLLALLYWQLQEGNYGR G >gi|225002521|gb|ACIZ01000058.1| GENE 23 22981 - 23241 294 86 aa, chain + ## HITS:1 COG:no KEGG:LGG_01298 NR:ns ## KEGG: LGG_01298 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 86 1 86 86 125 98.0 4e-28 MAEVNTRKAYREEQEKAQRAAREREAKRIEVEKAYARQRRGKPEVTAARFDDVTFRKVNS LKKRLNWAIGIVVGLIVIVFLVLYFV >gi|225002521|gb|ACIZ01000058.1| GENE 24 23318 - 24028 778 236 aa, chain + ## HITS:1 COG:SA1427 KEGG:ns NR:ns ## COG: SA1427 COG0775 # Protein_GI_number: 15927179 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Staphylococcus aureus N315 # 4 230 2 228 228 188 44.0 9e-48 MIKVGVICAMEEEIRTLLAKQTHQQETVIASQHYFEGQIDGVDVILVQSGIGKVQAAMTT ALLLATFKPDVVVNTGSAGGIGSGLAIGDVVISSGVAYHDADATAFGYLPGQLPQQPQIF EAGMSYVRQIQAAATATGLTSKVGLIVSGDQFINGKEAIARILKIYPQALASEMEGAAVG QVAKEFHTPFVVIRAMSDVADEQSGVDFDKFVIKAGEQSAAMLLQFFSHLQRSQHN >gi|225002521|gb|ACIZ01000058.1| GENE 25 24040 - 25203 952 387 aa, chain + ## HITS:1 COG:BS_yrvO KEGG:ns NR:ns ## COG: BS_yrvO COG1104 # Protein_GI_number: 16079805 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Bacillus subtilis # 1 346 1 344 346 361 54.0 1e-99 MQHIYLDNAATTPMAPEVIQTMTDQMQHDFGNASSTHWFGREAHTVMDKSRKVLADSIHA QPGEIVITSGATESNNTAITQTAHARASLGKHIITTAIEHPSVLQPLKALEKEGYRVTYL PVDENGRIRLADFDAALDDDTILVTIMMGNNEVGSRMPISEIGARLVDHQAWFHTDATQA YGLLDIDVNAQHIDMLSVSAHKINGPKGIGFLYRDPKVQFPALLKGGEQELKRRAGTENI AGIAGFASAVKLITPEEKAKRQSKYLGFKQQIMTALDDAKVPYAVNGDIRPDNVNHVFNL WLKGISTYALQTNLDLAGIAVSGGSACTAGSLEPSHVLTAMFGGDSPRLGESIRVSFGGQ TTADDIQAFIDTLLPIIKRLTAKQTSR >gi|225002521|gb|ACIZ01000058.1| GENE 26 25497 - 25838 455 113 aa, chain + ## HITS:1 COG:no KEGG:LGG_01302 NR:ns ## KEGG: LGG_01302 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 113 1 113 113 213 100.0 2e-54 MALASTGSAQGDPKTYRIGSNLKRFTLIDLGFVPTKNGNFQLQRSLDPNSPYTAANKLKM TVAKTLDKFQLDVTTGNGLKAINIFKNDSTKENVEQYEYWINNFIERGVLEPK >gi|225002521|gb|ACIZ01000058.1| GENE 27 26055 - 28328 1512 757 aa, chain + ## HITS:1 COG:CAC1464 KEGG:ns NR:ns ## COG: CAC1464 COG0178 # Protein_GI_number: 15894743 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Clostridium acetobutylicum # 6 748 9 753 755 787 50.0 0 MFEHGFIEVHDANQNNLQHVNVKIPKDAITVFVGRSGSGKSSLVFDTIAAESRRELNETF PSFTQQYLPKYGQPDVGSIDHLPVAIVVEQKRIGKNARSTLATYTGIYSLLRLLFSRAGK PFIGYSDTFSFNLPQGMCPTCQGLGYVDDIDVSKLIDPNKSLNQGAITFVSFGPDTWRWR RYAYSGLFDNDKPLRDYTPEEMKLLLYAPQQTLKHAPAKWPRTALYEGVVPRIKRSIIGK KEAEHHKAALAEIVTRKPCPDCQGTRLRPEVLTCLINQTNIAQVLQMDLVNVRHFLKAIQ VPLVQDVIRELLRKIDALIDIGLGYLSLDRPTETLSGGETQRIKIAKFLTSALVDMVYIL DEPSVGLHPHDIELIKRALLRLKEKGNTILIVEHNPALIALGDYIVEVGPGAGTTGGHIT FTGTYPQLLASQTLTGRLLKQRLTFRQPRSAKTTIHLPHITRHNLQDVDAAIPLGIETVI SGVAGSGKSTLVAALRDHLTVPYIDLAQADIGANIRSTPVTYLKILDPIRKVFAQANHVG SSWFSYNGRGACPRCKGKGVTITNMAFMDPVVSVCEQCHGKRYNDQALGYTFQGKNMADV LAMPIAAAQTFFAQNHDIAKPLENMARVGLDYLTLGQPLTTLSGGEKQRLKLAVELNRTG EIYLLDEPTAGLHLQDVTKLLHLFDDLVAAGNSLIIVEHNLQVISQADWLIDMGPDAGIY GGKILYAGTPQASMEAKQSRTGQALRQYNAAPERQHD >gi|225002521|gb|ACIZ01000058.1| GENE 28 28447 - 29577 913 376 aa, chain + ## HITS:1 COG:L52034 KEGG:ns NR:ns ## COG: L52034 COG0482 # Protein_GI_number: 15672819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Lactococcus lactis # 8 375 15 383 384 555 76.0 1e-158 MVIVLDNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTDENGVCTATTDYE DVAKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAE QLNADYIAMGHYAQVKTDEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKP EVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDGVEKGTHDGLM YYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTG EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFYDGEECLGG GTIDAAYAHTNELQYV >gi|225002521|gb|ACIZ01000058.1| GENE 29 30035 - 30697 676 220 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 3 209 2 204 206 160 42.0 2e-39 MTKLYFVRHGKTEWNNQGRYQGANGDSPLLPESFEQIKALADYLRGISFAHAYVSPLKRA RVTAQTLIKDLNEPIPLTIMPALREFNLGKMEGMTFTDVAKHFPQELHAFRHEPAAYDPR KIHGESFPQLINRAIPAIVATVAMDRTGTANLLYVSHGAALAAVIQSLLGTPLAEIRKDG GLTNSSVTILQADGPSLPFKLLNWNETSFLPEPPKPTDTI >gi|225002521|gb|ACIZ01000058.1| GENE 30 30743 - 31414 782 223 aa, chain + ## HITS:1 COG:no KEGG:LGG_01307 NR:ns ## KEGG: LGG_01307 # Name: not_defined # Def: tPR repeats containing protein # Organism: L.rhamnosus # Pathway: not_defined # 1 223 1 223 223 347 97.0 3e-94 MDSNILTAFNQGKHEEAIQAAVKAIDADPKNPKRYAVLTTMLISLKALDQAGELLAKARA LFPDDLELQYTAGLFAYAQADFPAAAAWFTKCRQDETLKNDATYMLALSYQQAGQPKKAL AFALTAHELAPKQTDAALLAADLLLGEQAFDAAAEILKPLLETRQPQVLFTYGMALSAAG KDGSAYLDAAKRLDPKGYDQKAGTVADINRFLRLQEGGHDGQA >gi|225002521|gb|ACIZ01000058.1| GENE 31 31401 - 33866 2143 821 aa, chain + ## HITS:1 COG:L180415 KEGG:ns NR:ns ## COG: L180415 COG0507 # Protein_GI_number: 15673722 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Lactococcus lactis # 9 808 8 824 834 638 45.0 0 MDRHEDSVTGRVKSIFFQNPTNFFKILLIDITATTITWTEPDIVVTGTFGDIKEDETYTF TGHVVDHPKYGQQFQADNYHVDRPTNKTGLINYLSSDKFPGIGPKTAEKIIDKLGVDAID RILDDPESLKGLGISAAKQKMLVTNLKTNQGMERVIIGLNDYGFTSNMAGRIYQQYQNDA LEVIKQNPYQLINDIDGIGFTRADQIAAKLAIAADSQLRLGGAVMDTLQRLTDGEGDTFV DLKTLVTQTLDLLERARQVAVNPEAVGQAIVTLAKDNALVAEGKRIFPKRLYDSEWQIAR QLKGLADAGRAAKQPALAEIKQTLAAVQEETGIAYDEVQKKAIITALQSPIFLLTGGPGT GKTTVTDGIVRTYAQLHDLSLDRHEYTPDDPFPIMLAAPTGRAAKRISETTQLPASTIHR LLGLGVDTQEFAPNDLPDGLLIIDEMSMVDTYLFRTLLTALHPGMQIVLVGDKDQLPSVG PGQVFADLLRSQALPHAALTHIHRQDADSSIIPLAHAVNAGRLPDDFTRPQVDRSFLPCS PSQVPEVVGQVVQRAAVKQFSIADIQVLAPMYRGTAGIDRLNPLLQDILNPKRSARTKTV HFGETEYRIGDKILQLVNDPNQNVFNGEIGQIVGITLAKEAASKTDELTIDFDGNEITYK RSDFSKITLAYATSIHKAQGSEFPMVILPLTMQSRRMLRRNLLYTAITRAKSFLILVGEL AAFETAVGEIAVNRHTGLVQRLQQAFGMTVSQPDVEKPTPATEVSKNNGQIDTNPSDLDN GISTDESNNYQLTPALVASQRIDPMIGMNGVTPQMFMTKEK >gi|225002521|gb|ACIZ01000058.1| GENE 32 33872 - 35089 1001 405 aa, chain + ## HITS:1 COG:BH1812 KEGG:ns NR:ns ## COG: BH1812 COG4552 # Protein_GI_number: 15614375 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Bacillus halodurans # 24 405 17 386 386 190 31.0 4e-48 MEDNIRKSLQIKSVTPKDLEQFNDLLTYVFQVTQKDLEQSGYEEGELERAKRPVLEKSDV LGWFHQNELVSSLAIYPCTVNIHGTLYQMAGLTGVGTYPEYAGHGLMHDLVKLGLEHMRQ HKQWISYLYPYSIPFYRKKGWEIMSDHLTFDVKDTQLPKQVEVPGHVERLEIDDPDVIET YNRFAMKNHGAMIRNQLNWDEYWRWENEEERTAGVYYDANDEPQGYVLYWIADEVFHVKE MIYTNQEARVGLWNFISAHFSMVTHVKGNIYKNEPLHFLLDDGDIYQTIKPYYMARIVDV KAFLAQYPFAAETTEPFHFVVSDPLAPWNNGTFGVYWDEHQQVKITNRPVGEAITTDIQT LTTMLMSYRRPSYLAQIERLSASKHAIKLLENAVPMEEPYFSDYF >gi|225002521|gb|ACIZ01000058.1| GENE 33 35219 - 36169 794 316 aa, chain - ## HITS:1 COG:L39484 KEGG:ns NR:ns ## COG: L39484 COG1597 # Protein_GI_number: 15673780 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 6 292 3 281 302 143 31.0 6e-34 MAAVFYYLIYNPAAGGGAAIPIFKQVKAVLDQRQLPYAIKTSRYPGHTNIIAKQIGNFNT RDHAILLVIGGDGTLNQAINGLIGTRQHDLPVAYVPAGSGNDFARGIGMSEDPMHALEQV LQATKPVAIDIGRYHERTRDETGYFVNNIGIGFDAAVVSAANHSDSKQLLNKFHLGKLTY LFHVIGSLLTRRPFPVAVYEKGVRHFFHRAYICTTTNIPYFGGGIQIYKPADPTDGHLDL IIVEWFNIVSWAFAMIQLMRGKAPTSRAVHLFHAKKLTVETSSLEFGQMDGEEMGTRPFE IDFSVASQKFWIDRSI >gi|225002521|gb|ACIZ01000058.1| GENE 34 36421 - 38103 1128 560 aa, chain - ## HITS:1 COG:lin1026 KEGG:ns NR:ns ## COG: lin1026 COG0595 # Protein_GI_number: 16800095 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Listeria innocua # 5 558 4 553 555 775 67.0 0 MKLNIKNNETAVFAVGGLGEIGKNMYGVQFQDEIIVIDAGIKFPEDDLLGIDYVISDYSY LVQNKDKIKALVITHGHEDHIGGIPYFLQQVPNVPIYAGPLAAALIRGKLEEHGLLRTTK LTEINEDTVLKFKKLSVEFFRTTHSIPDTLGIAVHTPQGIVIQTGDFKFDLTPVGDQPSP NFQKMCRFAEEGVLVLMSDSTNAEIPTFTKSERFVGKSIRHIFDRIDGRIIFATFASNIS RIAQAADAAMAHGRKIAVFGRSMETAMVNGRELGYLNIPDDVLVDAHQLNSLPADKVMIL CTGSQGEPMAALSRIANGTHRQISIQPGDTVIFSSNPIPGNTVSVNHVINQLSEAGAEVI HGKVNNVHTSGHGGQEDQKLMLRLIKPKFFMACHGEYRMQKIHCELAQQCGVPEKNCFIM ENGDVLALTEKSARIAGHFPAGDVYIDDSGVGDIGNAVIRDRRMLSEEGLVVVVATINMQ KQAVLAGPDLLSRGFIYMRESGELINQAQRRVYRTIKSTFSNNEKVTEATLKDAITSSLQ EFLFDKTERHPVILPMLILL >gi|225002521|gb|ACIZ01000058.1| GENE 35 38108 - 38320 298 70 aa, chain - ## HITS:1 COG:SPy1875 KEGG:ns NR:ns ## COG: SPy1875 COG5503 # Protein_GI_number: 15675694 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 76 76 63 51.0 1e-10 MIYKVLYQKDKIQNPRRETTQTLYLEAPSAVEARALVEANTPYNIEFIQELSGNFLEYEE KSANFKLTTF >gi|225002521|gb|ACIZ01000058.1| GENE 36 38815 - 39267 311 150 aa, chain + ## HITS:1 COG:no KEGG:LC705_01330 NR:ns ## KEGG: LC705_01330 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 19 150 19 150 150 258 100.0 5e-68 MVWLLIVVLLVVLATLWLFRKRWRRNKAIQILLYHSQRLTDQAMTEALQQLGISTDKPMT SKPIADIWGHGVMAFSYQISSSLGKVTQPALDQALRQAARQLDIASSDPALPPFVLTDFF ELEGELHIDVAFITNEATIEYVRDVNRVSS >gi|225002521|gb|ACIZ01000058.1| GENE 37 39290 - 39589 273 99 aa, chain + ## HITS:1 COG:no KEGG:LC705_01331 NR:ns ## KEGG: LC705_01331 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 99 1 99 99 156 100.0 2e-37 MNDDQDLIMRQIKSFAQGLGAALGKNQRKSDQPVIVFHEAEVSLASYQKTLMTVIREKGL IAAQAQLKKWQQTRLSAHQYQRLNAWIQEQQLINRNPDK >gi|225002521|gb|ACIZ01000058.1| GENE 38 39631 - 40185 574 184 aa, chain - ## HITS:1 COG:lin1043 KEGG:ns NR:ns ## COG: lin1043 COG0242 # Protein_GI_number: 16800112 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Listeria innocua # 1 179 1 178 183 202 58.0 3e-52 MYLMKDITRDGAKVLRERAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVG LAAPQVGQSKAMAAVLVPGDNDEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPG YVVRADRITIAYQNEAGEHKKVRLKNYPAIVCQHEIDHLNGVLFYDHINKEHPFSIDPEA VLIH >gi|225002521|gb|ACIZ01000058.1| GENE 39 40445 - 40612 79 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLPGSAKSLLLPLLFEDCSIMLTTFFLPIKQKNCTPIESVQKKHPNRLVLALYA >gi|225002521|gb|ACIZ01000058.1| GENE 40 40551 - 40640 93 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEQSSKSSGSSSDLADPGRPIMLPLRSLK >gi|225002521|gb|ACIZ01000058.1| GENE 41 40698 - 41513 610 271 aa, chain + ## HITS:1 COG:no KEGG:LGG_01319 NR:ns ## KEGG: LGG_01319 # Name: not_defined # Def: ATPase # Organism: L.rhamnosus # Pathway: not_defined # 1 271 1 271 271 449 98.0 1e-125 MLMMVSSGLTRYEAQKAQKTTTIRQETISKTNLFLPLLMTLAGVSSLIMVMSHSWFLTAI VAILASLTVMVIAYLAKAITRHQGQPQQPVLVVRDGLVRQVRAQDLVVGDVLMLTAGEKL PVDVALAPGASVTLPRDLAGLLILLNRRVPTGVGIAGAVMATDTQATVTAVLNDGLLDHG LKQLAGQSVTTTPTSLVTSAVAGLKLVLQQICRIFRLAVSVASLEMLKNKQIDRDEQIRV EIAFAHHATLVGAMKHHSKTSDFRHNQDPVS >gi|225002521|gb|ACIZ01000058.1| GENE 42 41774 - 42886 919 370 aa, chain + ## HITS:1 COG:lin1044 KEGG:ns NR:ns ## COG: lin1044 COG1071 # Protein_GI_number: 16800113 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 4 370 6 371 371 479 63.0 1e-135 MAKQHAAVDFKQLLDNQDADFKPTIQILDEVGKVVNPDIMPDLSDDQLVDLMSKMVWQRV LDQRATALNRQGRLGFYAPSAGEEASMIGSHAAMKSSDWLLPAYRDLPQLIQHGLPLDKA FLWSRGHVAGNEYPEDFHALPPQIIIGAQYVQTAGVALGLKKNGSDEVAFTYTGDGGTSQ GDFYEGVNFAGHFKAPALFIVQDNGFAISVPRASQTAAKTLAQKAVAAGVPGVQVDGMDA LAVYEVTKEARAWAAAGNGPVLIETLTYRYGPHTLSGDDPTRYRSKETDELWQKRDPLIR MRNYLTDKGLWSKDKEDALIEKVKDEIKDAINKADKAPQQTVSRFLKDTYEVAPQNVAEQ LAEFQGKESK >gi|225002521|gb|ACIZ01000058.1| GENE 43 42889 - 43866 997 325 aa, chain + ## HITS:1 COG:lin1045 KEGG:ns NR:ns ## COG: lin1045 COG0022 # Protein_GI_number: 16800114 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 325 1 325 325 499 75.0 1e-141 MAQKTMIQAITDALDVELANDPKTLVFGEDVGKNGGVFRATDGLQAKHGEDRVFDTPLAE SGISGLAIGLALTGWRPIPEIQFFGFVFETMDSIGGQMSRMRYRMGGTRSMPITIRAPFG GGVHTPEMHSDNFEGLIAQFPGMRVVIPSNPYDAKGLLISSIRSNDPVLFLEHMKLYRSF RQDVPDGTYTVPLDKAAVTREGTDVSIITYGAMVREALKAADNLAKDGINAEIVDLRTIA PLDVETIIASVKKTHKAVVVQEAQRMAGVASNVISEISERAILSLEAPIGRVAAPDTPFP FGQAENIWLPNAKDIEAKVRETVNF >gi|225002521|gb|ACIZ01000058.1| GENE 44 43884 - 45524 1606 546 aa, chain + ## HITS:1 COG:lin1046 KEGG:ns NR:ns ## COG: lin1046 COG0508 # Protein_GI_number: 16800115 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Listeria innocua # 1 545 1 543 544 510 55.0 1e-144 MAFEFKLPELGEGLAEGEIVKWDVKPGDDIKEDDTLLEVQSDKSVEEIPSPVSGKILKIL VPEGETASVGDLLVEIDDGSGPAAQPAAAPAAATDASAGNAPVAKSVYQFKLPELGEGLA EGEIVKWAVKPGDQIKEDDTLLEVQSDKSVEEIPSPVAGTVVKILVPEGETATVGEALVD IDAPGHNDTPVASGTAAAPQANTDTAASAAAPAAAGSVPAITDPNREILAMPSVRQYARE QGIDISQVPATGKHGRITKAGIDAFKAGAPAAAPAQPAATSAPKAAQPAPAATPAAPKPQ PVAPYVSTGSEAELETREKMTPTRKAIAKAMLASKQRSPHVTSFDEVEVSKLMAHRKKYK QYAADKGIKLTFLPYIVKALVTVLREYPEFNASIDDTTDEIVYKHYFNIGIATNTDHGLY VPVIKNADAKSMFEIAKEISDNAQKAYDSKLKPDEMRGGSMTISNVGSIGGGWFTPVINQ PEVAILGVGKIAKEPYVNADNEIVVGNLLKLSLSYDHRLIDGALAQTALNLMDKLLADPD LLLMEG >gi|225002521|gb|ACIZ01000058.1| GENE 45 45527 - 46930 786 467 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 11 460 5 451 458 307 37 1e-82 MVVGDFAIDLDTVVIGSGPGGYVAAIRAAEMGQKVTVIENTFIGGVCLNVGCIPSKALIN AGHRYQDALEASTFGINAKGADLDFKKTQDWKQNKVVHTLTSGVAMLLKKHKIETIMGTA FLKDDHSLRVMQKDSAQTYTFKNLIIATGSRPIEIKGFKFGKRILDSTGGLNLPEVPKEF VVIGGGYIGSELASAYANLGAHVTILEGTSSILPNFEKDMVQLVLNSFKKRGVTVITNAM AKEAEDTGNGVKVTYTADGKEQTIAADYVMVTVGRRPNTDDLGLDIVGIETTDRGLIKVD AQGRTNKPNIYAIGDIVPGAALAHKASYEGKIAAEAISGKASAVDYKAMPAVCFTDPELA TTGMTLAEAKDKGIKAKASKFPFAANGRALSLAQTEGFVRLVTDENGTVIGGQVAGAGAS DLISELTVAVEGGLNAEDLALTIHPHPTLSETIMDDAEVALGLPINI >gi|225002521|gb|ACIZ01000058.1| GENE 46 47174 - 48064 961 296 aa, chain + ## HITS:1 COG:L0017 KEGG:ns NR:ns ## COG: L0017 COG0039 # Protein_GI_number: 15673313 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Lactococcus lactis # 66 196 74 209 325 67 33.0 3e-11 MQRVVVHGASTGTQGLLQMLIMSLLDLQVGCYEPDETLVDVAGLTALSQICHNTFVKVTP KVLKAADVLILTDTGTPADEGFVATNITAIRKVLNSAMAAGFKGRIIVAMTHDELFTYFA QRFSGLNKRQVVGLGTFGATWQFEQFLAERLAVPAAQVTAYVVGTSQTPVLVWSRAYVGA TPVLRLLDDQTIFSEAVKAVQTFLASTLTVMLGKLVEPILAAFAGDGVIGTFTHLRDADD GTGQISSSPVLLDERGVVTLAMVAGSDDEEAALSQAIQAAQTQIEAIEQGANKNES >gi|225002521|gb|ACIZ01000058.1| GENE 47 48054 - 48335 393 93 aa, chain + ## HITS:1 COG:SP1404 KEGG:ns NR:ns ## COG: SP1404 COG4476 # Protein_GI_number: 15901258 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 90 1 90 92 89 52.0 1e-18 MKANYHYPLDLDWTTAEKIKVTTFYALVEDAYEHGVDRDNLLAAYKGFKQVVPDKGTERQ LGREFETLSGYSMYTVVQMARQGVSQKIRVRVS >gi|225002521|gb|ACIZ01000058.1| GENE 48 48338 - 49132 942 264 aa, chain + ## HITS:1 COG:lin1054 KEGG:ns NR:ns ## COG: lin1054 COG0483 # Protein_GI_number: 16800123 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Listeria innocua # 4 253 2 252 257 184 40.0 2e-46 MTQDPEKIRETLIGWFAASRKRILTAMAQPLDVAQKSNRNDLVTNVDKANQQFLIEHIKT DFPTARIIGEEGHGHDDTDLNGLVFFVDPIDGTMNFVKQQAHFAVMIGVYRDGQPIVGAI MDVMRNEVLSGGPNLPVTFAGRQLKPLPDLPLKDGLLGVAGPMAIKNRLHLGDVALASSG ARMSGSAGMEFIEVALGRQVGYVSYLQPWDVAAGMAITQGLGVEFSREDGSAINLSQPGV VVAATPQAHQTILAMMAGKSEQAH >gi|225002521|gb|ACIZ01000058.1| GENE 49 49385 - 51229 1586 614 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 2 611 3 612 613 887 73.0 0 MKTRDDIRNIAIIAHVDHGKTTLVNEMLKQSDTLDQHIQLQDRAMDTNAIEKERGITILS KNTAVKYGDTTINILDTPGHADFGGEVERVMKMVDGVLLVVDAFEGPMPQTRFVLKKALE QHLTPIVVINKVDRPGARPEEVVDEVLELFIELGADDAQLEFPVVYASAVNGTSSMDSDL STQKHTMNPLFETIIKTIPAPIDNSDEPLQFQVAMLDYNDYVGRIGIGRIFRGKIKIGDN VTVMKLDGSQKNFRVTKLFGFFGLTRTEINSAKAGDLIAVSGMDDIFVGETVTAADTPEA LPILRIDEPTLQMMFVANDSPFAGREGKNVTARKLEERLKAQLQTDVSLRVDDTDQAGAW MVSGRGELHLSILVEEMRREGFELQLGRPEVIYRDIDGVTMEPFETVQIDTPEQYTGTVI DAMSQRKGEMQNMENEGNGQTRLTFLAPSRGLIGYSTEFLSSTGGYGIMNHTFEKYAPVI KNWEPGRTQGALVSINAGTATTYSLQSVEDRGQLFINAGTEVYEGMIVGQNSRENDIAVN VTKGKNLTNTRAAGKDHAAAIKTPKKMTLEESIEFLNDDEYCEVTPENIRLRKKILNTGE RQKAAKRKKIAASK >gi|225002521|gb|ACIZ01000058.1| GENE 50 51493 - 52644 906 383 aa, chain + ## HITS:1 COG:SP1067 KEGG:ns NR:ns ## COG: SP1067 COG0772 # Protein_GI_number: 15900936 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 375 9 394 409 229 36.0 5e-60 MDYFILVPYLILCAIGIVMVYSASAYWVQRQYGAAETKYLVQQILFVILGIGTVFFFYKM SLKILRNRWVLFILMSTLLVLLVYLILHGRAVNGASAWITIGGFRLQPSEFAKMILIFYL AHMLSSRENSFQQENFRLHQMWQPLFMAGVIMFLVFIEPDTGGFAILFLITLVVVMSSGI PMRYGLIWVLGLIATGVLGYYIVSHYHFAGLENNYAYQRLVAAIHPFEKANAAGNQVVNS LYAINHGGWFGVGLGMSSQKLGYLPEPYTDFILAVIAEELGLVGTVVILSLLFFLVMRFF LIGVRSKNTYHTLIAYGIATMMLVQTIFNVGAVAGVIPVTGVTLPFISYGGSSMIVLSMA VGIMLNISYHSERTQRKVEKTHA >gi|225002521|gb|ACIZ01000058.1| GENE 51 52637 - 56074 2986 1145 aa, chain + ## HITS:1 COG:L63652 KEGG:ns NR:ns ## COG: L63652 COG1038 # Protein_GI_number: 15672651 # Func_class: C Energy production and conversion # Function: Pyruvate carboxylase # Organism: Lactococcus lactis # 1 1138 1 1136 1137 1301 57.0 0 MHKVLVANRGEIAIRIFRACEELGLKTVGIYAKEDALSIHRFKAQESYQVGVGKAPIAAY LDMDDIIRIAKQSGADTIHPGYGLLSENATFARKVRAAGLTFVGPRLELLDVFGDKVAAK EAAHKAGLTTIPGTPEPTRDFTEIQDFTAKHGFPVMLKAASGGGGKGMRIVHSEAELEAV YQNAVNEAKASFGDDRMYVEKYIASAKHVEVQVLGDEHGHLLHLFERDCSVQRRQQKVVE IAPAVALPLALRNRICQSAVDLMASLHYENAGTVEFLVDGDQYYFIEVNPRVQVEHTITE LITGVDIVQSQLRIAAGADLFADLHLPQQDALRENGAAIQCRITTEDPENNFMPDTGTIN TYRSPGGFGIRLDVGNAYAGAVVSPYFDSLLVKASVHAPSFPAAVAKMQRALHEFQITGV KTNVAFLEHLLATQTFRTGEAETAFIDAHPELLQVQAKPDVASRLLWYISDVTVNGFKGV ERQSQKYYPELQYARHFSAAKPQTDLVALLKNEGAQAVTDWVKAHPALLLTDTTFRDAHQ SLFATRMRTRDMLTVAEDMGNGLPNLFSMEVWGGATFDVAYRFLNEDPWVRLKKLRAALP HTLLQMLFRGSNAVGYQNYPDNVIKAFINQAANDGVDVFRIFDSLNWLPQMTLSIDTVKQ AGKIAEATMCYTGDILSDAHPKYQLAYYVDLAKQLVDAGADMIAIKDMAGLLKPQAATEL IAALKDAVTVPIHLHTHDTTGNGIATYLAATNAGVDIVDVAQSSFSGTTSQPSLESLYYA LSGNQRQPEVPIEKAQSLNRYFQAIRPYYADFSNGVTGPLTDIYTVQMPGGQYSNLQQQA HSMGITDFEAVKAMYAQVNTLFGDIIKVTPSSKVVGDMALFMLQNHLTPQDVKEHGEQYD FPASVVAFFKGDLGQPVGGFPKTLQKKILKGQKPLTVRPGQLAKPVDFEAVRQDLIAAGV PDPSTEDILSAVLYPDVFKAYARKQKQIGPVTKLDSPSYFQGMRLGETVAVPIRAGKTLI IQLNAIGKADASGMKTLYFTVDGQKQEIQIRDAHQKSAGLQHQLAEPTDKNQIGAPMAGK IVSVAIKQGQHVAKGEALFVIEAMKMETTVHAPFSGTVTHLYVEAGALIKSQELLAKLQP GAAKQ >gi|225002521|gb|ACIZ01000058.1| GENE 52 56092 - 56439 282 115 aa, chain + ## HITS:1 COG:BS_ylbG KEGG:ns NR:ns ## COG: BS_ylbG COG4471 # Protein_GI_number: 16078564 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 6 84 4 82 90 78 53.0 3e-15 MFAMKQRQGLVVWVYSLKQLKTLRRYGTIMYVSRRLKYVYLYLDRDEIAATSHKLIKLRF VKRVEPSHRPELKTEFGDEIGKFKPTEEDLETKAKPQRHARLLTGEAKGDQHARH >gi|225002521|gb|ACIZ01000058.1| GENE 53 56408 - 56992 428 194 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 192 7 198 199 169 44 4e-41 RQKVINMRVISGTFRGLRLNAVPGNQTRPTADKVKESMFNMLGPYFDGGHALDLYAGTGA LGIEAVSRGLTDAVLVDRQYAAIKTIHTNVALTKQAERFTVLKMSVTKAISHFAANHQQF ELILMDPPYAQQHVLAQLAAFVSQQLVVPGGRVLVETGLDVDYPEVIPGYTKIRRQTYGV AQVLILERNEEDHD >gi|225002521|gb|ACIZ01000058.1| GENE 54 56985 - 57488 375 167 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 1 163 1 162 164 149 48 5e-35 MTKKIAVFPGSFDPFTNGHLDTVLRASRLFDEVVVAAMTNTSKRALFSSDEKLALIEAST ADIANVKAVAAPRRLTVEFARSIGARFIIRGIRNVADFGYEADIATVNHDLDQEIETVFL LADKQYDALSSTIIKEVAAFGGDIHRFVPAPVEKALYAKLGESHQAK >gi|225002521|gb|ACIZ01000058.1| GENE 55 57466 - 58554 428 362 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 11 354 3 343 350 169 30 4e-41 MSLIKQSNHLKSKKRWRWLVGAIIAIVLIAAFLFFPTNYYLEVPGSAESLKPFVKVAGTK DKAKGSYMLTTVGVVGPASPALLLFSKTQAHTEIVSKQDLMGSDSSAEYDQLQTYYMKSA ANNAVAAAFKAAKQPVKTEHRGIYVMSVLPQSPFKGKLALGDTITKLNGKSYQTADAYVN AIKSKKVGTNITLTYQHKGQTKQATAKLIRLPQTKRAGIGITLTENTAVTSDPKVTIDAG NIGGPSAGTMFALQIYTQITHQDLRRGRIIAGTGTIDPDGHVGQIGGIDKKVVAADAKGA KIFFAPNQPATKKLKHYDPNYVNNYAEAVQTAKQIKTKMKIVPVKTLGDVIRYMKAYAKA DQ >gi|225002521|gb|ACIZ01000058.1| GENE 56 58533 - 58682 105 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFSANKSVSPFFSPQQHITHGKQKELFFQQFFFKLNLLQPLTTYWSALA >gi|225002521|gb|ACIZ01000058.1| GENE 57 58652 - 59317 533 221 aa, chain + ## HITS:1 COG:BH1333 KEGG:ns NR:ns ## COG: BH1333 COG1555 # Protein_GI_number: 15613896 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Bacillus halodurans # 72 217 73 207 210 112 39.0 6e-25 MATLIYWLKTYWYAPLIILIGGFFFWQQAKAGSANQPLSVSVNSHSSSHMAASRSSKATS MSGSHRPSHGFVHLKGAIQHPGIYPVKENTRWDEVVKAAGGLTAAADMQQVNLAKIASDQ ESLYVPEKGETSTATAPTTTAGGTSATGKPTQTASGAVVDLNKADVAQLTTISGIGPKKA ADIISYRDSHGGFKDINELKEVHGIGDKTFETLAPQLTVGP >gi|225002521|gb|ACIZ01000058.1| GENE 58 59314 - 61518 969 734 aa, chain + ## HITS:1 COG:L0317_2 KEGG:ns NR:ns ## COG: L0317_2 COG2333 # Protein_GI_number: 15673754 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Lactococcus lactis # 452 706 7 267 282 159 36.0 1e-38 MSGRLILLAAALLAGIMGGIGLWWVLAILLIWLVMKTNRTSFVYVGLFLVIGWGCGRADA NQWQNPPQPRGSVTIPASAIKLKDGYVSFIGRAANGIAVSGRGSVSKELAERLASNDQPV QLAGGYEVARLAPARNQFEFDYATYAWQSRQLAYELVKPTLNFSFQPRRQFFDVVDSWRV HLFAYFEQLPNKVRQYAKGLLLGQLDDDFLTQRQAFVDLGVFHLFSISGLHLFALVASLY WLAARLRIPQGLVDGLLLGLLPLFLLLLPLGAGLWRAVWMRLADIINRYLRFGLTGLDLF SMVLMVNLLWQPRVLMTMGGQLTYLMTGLLIGLPALHKWQVNWRLVLGGMPVIAWHTFSF NLLTVFFNWLLMPIFELIIIPGLVFALLMPHAGLTYLFNDALQLLETILIRLSHLPGQII IGAFPSWLAVLGVFAMMLVLTWQCWPVAVGWFVVLALWSWYQPNYRVVMFDVGQGDAILI ESPFHQGVMLIDTGGRIFGKTSHPPVSRAIVPYLHARGYARLNTLVLTHPDMDHVGDAPK LAELIPIERLVTTPTAQHHPMIKKVSQRVAATQTVTADQWLQVGPLRLQVLAPSATGHHD PQDTNADSIVLYGKIGNSRWLFTGDADQTVEKTQILPRHLQVDYLKAGHHGSKTASAPAL ISSLQLKAALISAGVDNRYGHPHPETLATFANAHVPWSSTSEQGMLWVEPNPQRQQDQLF GWLQKRSRQSHAGP >gi|225002521|gb|ACIZ01000058.1| GENE 59 61505 - 62566 857 353 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 3 325 2 325 347 231 38.0 2e-60 MQVRDFIKHLKNGERPPLTLILGEEQALRQQAQQALANLIPEDQKAMNFGRYDMHQTPVG VALDDATSIPFFGEYREVVIDDPYFLTGEKSTDKIEHDLTGLQAYFDNPVPSTMMVLIAP YKKLDERKRLTKALKKAALIVDAAPLDERSARMALAQIFKQHQVDIQPPALDALVQRTNG QYSVMMGEVRKLLTYASDGSPLTVAAVSALVPKQLNDRVFDLVTDVLRQNAADALALYRD LLAQREEPIRLNALMLGQFRLLIQVKLLAQKGYGQGDIAATLKAHPYRVKLALRQVGRLP YHQLAQAYSGLVDTETAMKTGTIDKALAFELFMLKYTGQASAHRKGKYTASRS >gi|225002521|gb|ACIZ01000058.1| GENE 60 62679 - 62933 406 84 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|199598192|ref|ZP_03211614.1| Ribosomal protein S20 [Lactobacillus rhamnosus HN001] # 1 84 1 84 84 160 100 1e-38 MPQIKSAIKRVKTQENARERNIAQLNAMRTAVKKFKSASEQNADNSQDLYKAATRAIDMA NSKGLIKKNKAGRDKSRLAALLNK >gi|225002521|gb|ACIZ01000058.1| GENE 61 63182 - 63451 455 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598193|ref|ZP_03211615.1| Ribosomal protein S15P/S13E [Lactobacillus rhamnosus HN001] # 1 89 1 89 89 179 100 3e-44 MAIDQTQKNEIIKQYARHDGDTGSPEVQIAVLTAEILALNDHLSVHKKDHHSYVGLMKKI GHRRNLLAYLRNKDIIRYRDLIKSLGLRR >gi|225002521|gb|ACIZ01000058.1| GENE 62 63569 - 64258 632 229 aa, chain + ## HITS:1 COG:no KEGG:LC705_01353 NR:ns ## KEGG: LC705_01353 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 229 1 229 229 417 100.0 1e-115 MYPEYRQRYQDQLVRVTILSVTTTIAWAIGTIGSQWAVAGVSPRDEKQAASEQVDPVLVE LVRVIAGRLVDKNLATTSLPESLLPMVTALTEHHWLKPDSESALKLIPKPAGAPLNFWSL RKAVFLTVPQQKVRPADLHEWLRNILPNVHGLGYGPVTDLAALAVLALDTSHHLAAGSSP EVAVVLDNGKEVAAYHLDAAQTSDTGYQSALQAAKQNLKTVHRFFANEV >gi|225002521|gb|ACIZ01000058.1| GENE 63 64558 - 66240 1540 560 aa, chain + ## HITS:1 COG:SP0613 KEGG:ns NR:ns ## COG: SP0613 COG0595 # Protein_GI_number: 15900521 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 551 1 551 553 624 55.0 1e-178 MTKINLVALGGVRENGKNMYAVEVDDQIFVCDFGLKYPDNELLGIDVVIPDFSYLTENAD RIAGIFLSHGHADAVGALPYFLVDHPVPVFGSELTIAMAKVFMQHDSKAKKFKDFHVIDE KSVIDFGDVSVSFFKTTHSIPGSLGIDIETSEGQIVYTGDFKFDPSATPMYQTDWARLAQ IGNKKVLALLSDSANAESPYPNANEHEIYDHIKETFEYQDGRIIVAGVASNIQRIQQVIN AAASLGRRVVLTGRDVEKVVKTAIRMGYIKLPDDDILAKTKELKGLAPEKTVILETGRMG EPMKSLQRMATSRHRLIHIHEGDLVFITTTIAHAMETMAARTKDMIYRAGGDVKVLGDDI HSSGHAYKNDLQLMIDLLKPEYLVPVQGEYRLLAAHAEIAHEAGIPLANIFIVGMGDILR YEKGQMNASGHVNAGNTMIDGIGVGDIGNIVLRDRKMLAEDGIFIAVVTIDRKKKRVVSK PKVTSRGFVYLKTSRDLLAESGTLVTETVQKNLDNKEFDWTHLKQDVRDKLSRFLFEQTK RRPVILPVIMEVNQNSAKRQ >gi|225002521|gb|ACIZ01000058.1| GENE 64 66330 - 67226 797 298 aa, chain + ## HITS:1 COG:no KEGG:LC705_01355 NR:ns ## KEGG: LC705_01355 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 298 4 301 301 542 100.0 1e-153 MVSLPDNEQRHLTIGKQALQKGNYASAAAHLEKAYEATQTFAIAQPLAASLNGLKQFHES LNVMLAHYQSFMQTDGDVQLVLDAWLGTLNFVMARTMLRQLDPIRRQRFRQQIEAAEALA LNERGEQIAELVRKVSHLGGFSRQEQQDLFNQVGLLPKAQLIKAAVPDLTDESIPVAMRV SLLDLLTNVGYDQPVQYQAYDRVETIIPSELPGMADEPTGPQILDRLQKALGDDDQELGQ ALVQMARVQIAFLYPDISRLIPDQAAFVQAYLDHHQGKTTPFDDLFAWQAAETAKLSE >gi|225002521|gb|ACIZ01000058.1| GENE 65 67447 - 68637 1401 396 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 4 396 3 407 407 544 66 1e-154 MAEKEHYERTKPHVNIGTIGHVDHGKTTLTAAITKVLSEKGLAQAQDYASIDAAPEEKER GITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH ILLARQVGVDYIVVFLNKTDLVDDPELIDLVEMEVRELLSEYDYPGDDIPVLRGSALKAL EGDPEQEKVIMELMDTIDEYIPTPVRETDKPFLMPVEDVFTITGRGTVASGRIDRGTVKV GDEVEIIGLKPDVLKSTVTGLEMFRKTLDLGEAGDNVGVLLRGINRDQVERGQVLAKPGS IQLHNKFKGEVYILTKEEGGRHTPFFSNYRPQFYFHTTDVTGVIELPDGVEMVMPGDNVT FEVDLIAPVAIEKGTKFTVREGGRTVGAGVVSEILD Prediction of potential genes in microbial genomes Time: Wed May 25 19:51:39 2011 Seq name: gi|225002520|gb|ACIZ01000059.1| Lactobacillus rhamnosus LMS2-1 contig00062, whole genome shotgun sequence Length of sequence - 67069 bp Number of predicted genes - 61, with homology - 61 Number of transcription units - 31, operones - 16 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 271 - 306 -0.7 1 1 Tu 1 . - CDS 395 - 1261 464 ## LC705_01359 hypothetical protein 2 2 Op 1 . - CDS 1330 - 2064 164 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 3 2 Op 2 . - CDS 2061 - 2435 413 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 4 2 Op 3 . - CDS 2498 - 2881 351 ## COG0789 Predicted transcriptional regulators - Prom 2992 - 3051 5.8 + Prom 2809 - 2868 2.2 5 3 Tu 1 . + CDS 2914 - 4767 206 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 4832 - 4871 1.4 + Prom 4837 - 4896 5.3 6 4 Op 1 4/0.000 + CDS 4939 - 6279 1566 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) + Term 6299 - 6332 5.1 + Prom 6362 - 6421 4.2 7 4 Op 2 4/0.000 + CDS 6442 - 7692 256 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 + Term 7711 - 7750 10.0 + Prom 7754 - 7813 5.8 8 5 Op 1 . + CDS 7879 - 8478 600 ## COG0218 Predicted GTPase 9 5 Op 2 . + CDS 8478 - 8768 396 ## COG1694 Predicted pyrophosphatase + Term 8818 - 8872 5.6 - Term 8812 - 8853 6.1 10 6 Tu 1 . - CDS 8897 - 9058 167 ## gi|229552145|ref|ZP_04440870.1| conserved hypothetical protein - Prom 9193 - 9252 6.3 + Prom 9219 - 9278 5.4 11 7 Op 1 34/0.000 + CDS 9298 - 10755 1541 ## COG0765 ABC-type amino acid transport system, permease component 12 7 Op 2 . + CDS 10745 - 11491 560 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 11503 - 11547 6.1 + Prom 11610 - 11669 8.3 13 8 Tu 1 . + CDS 11696 - 13504 1350 ## COG0322 Nuclease subunit of the excinuclease complex + Term 13559 - 13610 3.2 - Term 13642 - 13700 4.4 14 9 Op 1 19/0.000 - CDS 13744 - 15717 1830 ## COG1299 Phosphotransferase system, fructose-specific IIC component 15 9 Op 2 10/0.000 - CDS 15727 - 16641 535 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 16 9 Op 3 . - CDS 16638 - 17387 632 ## COG1349 Transcriptional regulators of sugar metabolism + Prom 17550 - 17609 7.1 17 10 Op 1 . + CDS 17637 - 18923 1166 ## COG0536 Predicted GTPase 18 10 Op 2 . + CDS 18964 - 20958 1380 ## COG1835 Predicted acyltransferases + Term 20968 - 21002 -0.5 + Prom 20997 - 21056 6.6 19 11 Op 1 4/0.000 + CDS 21173 - 22132 758 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III + Prom 22216 - 22275 1.7 20 11 Op 2 . + CDS 22310 - 23095 886 ## COG0300 Short-chain dehydrogenases of various substrate specificities 21 11 Op 3 . + CDS 23109 - 23435 362 ## LGG_01366 integral membrane protein + Term 23438 - 23481 4.3 + Prom 23458 - 23517 7.2 22 12 Op 1 . + CDS 23549 - 26155 1760 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Prom 26165 - 26224 5.2 23 12 Op 2 . + CDS 26336 - 26527 328 ## PROTEIN SUPPORTED gi|199598724|ref|ZP_03212138.1| Ribosomal protein L32 + Term 26534 - 26566 4.0 + Prom 26616 - 26675 2.3 24 13 Op 1 . + CDS 26696 - 27250 574 ## LGG_01369 hypothetical protein (TPR repeats) 25 13 Op 2 . + CDS 27247 - 28800 1371 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 28813 - 28851 -0.7 26 13 Op 3 . + CDS 28889 - 29749 843 ## LGG_01371 hypothetical protein + Term 29784 - 29828 6.1 - Term 29772 - 29816 6.1 27 14 Tu 1 . - CDS 29863 - 30057 263 ## LC705_01386 hypothetical protein - Prom 30117 - 30176 5.2 + Prom 29876 - 29935 6.2 28 15 Tu 1 . + CDS 30153 - 33449 2839 ## COG0587 DNA polymerase III, alpha subunit + Prom 33454 - 33513 7.4 29 16 Op 1 12/0.000 + CDS 33561 - 34520 875 ## COG0205 6-phosphofructokinase 30 16 Op 2 . + CDS 34580 - 36346 1805 ## COG0469 Pyruvate kinase + Term 36375 - 36414 6.8 + Prom 36400 - 36459 4.5 31 17 Op 1 . + CDS 36574 - 37035 607 ## COG2707 Predicted membrane protein 32 17 Op 2 . + CDS 37069 - 37953 457 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains 33 17 Op 3 . + CDS 37955 - 38836 698 ## COG4974 Site-specific recombinase XerD + Term 38874 - 38915 1.1 + Prom 38942 - 39001 4.2 34 18 Op 1 . + CDS 39028 - 39414 286 ## LGG_01379 RibT protein, riboflavin biosynthesis acetyltransferase (GNAT) family 35 18 Op 2 21/0.000 + CDS 39389 - 40114 592 ## COG1354 Uncharacterized conserved protein 36 18 Op 3 12/0.000 + CDS 40114 - 40731 627 ## COG1386 Predicted transcriptional regulator containing the HTH domain 37 18 Op 4 . + CDS 40715 - 41461 567 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Term 41686 - 41729 7.0 + Prom 41463 - 41522 6.3 38 19 Tu 1 . + CDS 41758 - 42336 590 ## COG3601 Predicted membrane protein + Term 42382 - 42426 7.6 - Term 42368 - 42414 9.2 39 20 Tu 1 . - CDS 42507 - 42764 192 ## COG1141 Ferredoxin - Prom 42786 - 42845 4.7 + Prom 42740 - 42799 7.1 40 21 Op 1 . + CDS 42844 - 43833 709 ## LC705_01400 hypothetical protein 41 21 Op 2 . + CDS 43820 - 45229 852 ## COG0514 Superfamily II DNA helicase 42 21 Op 3 . + CDS 45289 - 45930 543 ## LC705_01402 hypothetical protein 43 21 Op 4 21/0.000 + CDS 45996 - 46664 627 ## COG0283 Cytidylate kinase 44 21 Op 5 3/0.125 + CDS 46749 - 48059 2197 ## PROTEIN SUPPORTED gi|199598703|ref|ZP_03212117.1| 30S ribosomal protein S1 + Term 48079 - 48108 1.4 + Prom 48074 - 48133 9.2 45 22 Op 1 . + CDS 48206 - 49513 1290 ## COG1160 Predicted GTPases + Term 49643 - 49684 4.3 + Prom 49614 - 49673 2.5 46 22 Op 2 . + CDS 49747 - 50022 361 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 50054 - 50099 11.4 + Prom 50105 - 50164 4.6 47 23 Tu 1 . + CDS 50205 - 51470 1365 ## COG0457 FOG: TPR repeat 48 24 Tu 1 . - CDS 51489 - 52367 929 ## COG1284 Uncharacterized conserved protein - Prom 52391 - 52450 6.5 + Prom 52377 - 52436 6.7 49 25 Tu 1 . + CDS 52468 - 53664 890 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase + Term 53717 - 53768 2.5 50 26 Tu 1 . + CDS 53790 - 54245 475 ## LGG_01395 hypothetical protein + Prom 54314 - 54373 4.0 51 27 Op 1 1/0.250 + CDS 54394 - 56307 1503 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 52 27 Op 2 16/0.000 + CDS 56324 - 57274 626 ## COG0207 Thymidylate synthase 53 27 Op 3 . + CDS 57391 - 57882 655 ## COG0262 Dihydrofolate reductase + Term 57957 - 58007 10.1 54 28 Tu 1 . - CDS 58017 - 58658 574 ## COG1272 Predicted membrane protein, hemolysin III homolog - Prom 58762 - 58821 4.9 + Prom 58807 - 58866 7.0 55 29 Tu 1 . + CDS 58900 - 59742 734 ## COG1307 Uncharacterized protein conserved in bacteria + Term 59763 - 59793 2.1 + Prom 59910 - 59969 5.9 56 30 Op 1 3/0.125 + CDS 60005 - 60850 744 ## COG2755 Lysophospholipase L1 and related esterases 57 30 Op 2 1/0.250 + CDS 60855 - 61496 469 ## COG4698 Uncharacterized protein conserved in bacteria 58 30 Op 3 2/0.250 + CDS 61522 - 62040 567 ## COG0225 Peptide methionine sulfoxide reductase 59 30 Op 4 1/0.250 + CDS 62043 - 62285 253 ## COG4479 Uncharacterized protein conserved in bacteria 60 30 Op 5 . + CDS 62239 - 63696 1356 ## COG0793 Periplasmic protease + Term 63718 - 63761 5.0 + Prom 63707 - 63766 5.2 61 31 Tu 1 . + CDS 63955 - 67069 1001 ## LC705_01422 hypothetical protein Predicted protein(s) >gi|225002520|gb|ACIZ01000059.1| GENE 1 395 - 1261 464 288 aa, chain - ## HITS:1 COG:no KEGG:LC705_01359 NR:ns ## KEGG: LC705_01359 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 288 1 288 288 556 100.0 1e-157 MVSYNNQFFHGERSLFGQENATIVKTTFGKGESPLKESRNIKLDQSIFLYKYPLWYSQHI TVANTIFETMARSGIWYTNDITMSDSAIQAPKTFRRSQNIRLKNVHFSDASESLWNCNHI SFDHVQASGNYIGMNSTNIVANHLDLIGDYAFDGAKNVEIHHSTLVTKDAFWNCENITIY DSTINGAYLGWNTKNLTLINCTIESNQGLCYVDHLTMKNCALLHSDLVFEYSTNINADIC SDIISVKNPSSGNIRAQSIGNIILEADKIEPAKTKITVTQPSEIKQSA >gi|225002520|gb|ACIZ01000059.1| GENE 2 1330 - 2064 164 244 aa, chain - ## HITS:1 COG:CAC0284 KEGG:ns NR:ns ## COG: CAC0284 COG0846 # Protein_GI_number: 15893576 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Clostridium acetobutylicum # 9 222 6 227 245 120 32.0 2e-27 MSPLKQAQRLQQAAALIRQHHQIVAFTGAGISTESGIPDLNGIDQILKKSHKFAGDIFRF LDPEEASADPSGFYQLYRQTFCQPEALPNRAHQALVQLEQANKLLGVVTMNVDYLHQTAG TRHVAEYWGDVRHNHCTICHHSYDWQKPSTSTVPTCPNCGGLILPDFVLRRLATYPDEIK YGQQMLAQADLLLIIGTRRPATSFRLNCPKIVINTSQSARDSLHESNTIYLSGKAAELLH DIVA >gi|225002520|gb|ACIZ01000059.1| GENE 3 2061 - 2435 413 124 aa, chain - ## HITS:1 COG:L35675 KEGG:ns NR:ns ## COG: L35675 COG0599 # Protein_GI_number: 15673958 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Lactococcus lactis # 8 124 5 121 122 128 52.0 2e-30 MSEKTRLENGQETLAQVDGEAAANVMHSLADIAPDVGKYILEFAFSDIYNRPGLDLKQRE MITVTALLIQGDTADQLQVHLNGALNVGLTKTEVVETMIHCIPYIGFPRVLNGLTVARHV FETR >gi|225002520|gb|ACIZ01000059.1| GENE 4 2498 - 2881 351 127 aa, chain - ## HITS:1 COG:lin0806 KEGG:ns NR:ns ## COG: lin0806 COG0789 # Protein_GI_number: 16799880 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 116 1 116 123 119 56.0 1e-27 MGYPIGKFSKMVSLSIDTLRYYEKEHLIIPDRDQNNRRTYSDADQRWIAFIKRLKATGMP IKEIKTYARLRYQGNSTIDERLKLLFTQKSRLAAQRREIDAHIAFLENKITTYHQLKAKL TTENSKK >gi|225002520|gb|ACIZ01000059.1| GENE 5 2914 - 4767 206 617 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 393 603 35 251 329 84 29 2e-15 MYDETFCEISQYLYKSLSVLIAKLKLLLYDKVSEKGAIHLTKSTTWRMIAFFWHQLADMK RQLFRIIVALVGVAVASYLVPRLTQYVIDQVIPQRAMGTLMGVIAMALLLTAMAGWLSGL STYWIGQVSLHAIARMRDDLFRHTLGLDMRYFETSQTGDLMVVLTSDVNTLQRLISSNTL GLFGSLLSFVVVLVLMIVQDWQLTGLILLTFPVLFILNNIFVRNIRAAYRRVRASSGMMN NQIQQALTSIGLIKSFTTEATTARTFQQANARNRDYQLKATKLSATFSPLTDFVNYLGTA IILGFGAIQVMHGQFTIGLIVAYTAYLGILQAPIRQLTGLIQQLQQATVSFERIEALQAA TPQIVSPPNAVHLPRFQKRIQFDHVDFSYDEAVPVLQDVDFTIEKEEVVALVGSSGAGKT TITNLLARFYDPTSGRILMDGIDLRQADLMSLRQQIAIVSQDVILLDGTIQQNLEYGTSS VSEAAIWQAAEAANIAAFIRSLPQGLATQVGERGIRLSGGQKQRIAIARVFLKNAPIVIL DEATAALDNESERFVQTSFDRLMTDRTSIVIAHRLSTVRHADKILVLEHGRIVEAGNHEQ LMAQNGRYKELYDLQFT >gi|225002520|gb|ACIZ01000059.1| GENE 6 4939 - 6279 1566 446 aa, chain + ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 424 1 424 427 420 57.0 1e-117 MSAKWEKKGTNDGELTFEIDLPKIQEGLDQAFQRVRKNLTVPGFRKGKVSRTVFKRMYGD AALYEDALNILLPDAYEAAVKESGIDPVDQPKIDVESMDEGKPWVIKANVTVKPEVKLGQ YKGVEVPKQDVEVSDDDVNAELEKRREQQAELVVKDDKAAENGDTVVIDYVGTIDGKEFD GGSSKNYSLELGSNSFIPGFEEQLVGHKSGDEVTVNVTFPEDYKATDLAGKAAEFKTTIH EVKVKELPELDDDFAKDLDDDVDTLAELKDKIKKELTDQRKEAAKNAVQEAAIKKATENA TIEEVPNAMIEQEVHNQMDQYLGNMQRQGISPKMYYQLTGTTEEDLHKQFEADAETRVRT NLVLEAIVKAEDIQPTEDQVTEEVKNLASEYNMDEKAVRQALSEDMLKHDIGVKEAIDII TDNAKEVEAAKDETADKADSDKKSAK >gi|225002520|gb|ACIZ01000059.1| GENE 7 6442 - 7692 256 416 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 153 402 248 451 466 103 31 3e-21 MFDNVETTGPVTCSFCGKSQDQVKKIVAGPGVYICNECIDLCKEIIDEEFKEEAYQNLLE VPKPIEIMKSLNDYVIGQDAAKKALSVAVYNHYKRVNQMQTATKDDTELQKSNIALIGPT GSGKTFLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAEKGIV YIDEIDKIAKKAENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTT NILFIVGGAFDGIENIVKNRIGEKTIGFGTDSTNQVDPDKSLMQQIIPEDLMQFGIIPEF IGRIPILAALEKLNESDLVRILTEPKNALVKQYQKLLSLDDTDLEFTPNALKAIAHQAIV RDTGARGLRSIMEAIMQDTMFDLPSRSDVDKVVVTKSAVEGKAKPQLVLTKGREAS >gi|225002520|gb|ACIZ01000059.1| GENE 8 7879 - 8478 600 199 aa, chain + ## HITS:1 COG:lin1593 KEGG:ns NR:ns ## COG: lin1593 COG0218 # Protein_GI_number: 16800661 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 1 191 1 191 194 213 55.0 2e-55 MDVHDVKLTISAVAAAQYPEDGRPEIAFLGRSNVGKSSLINKLIKRKAMARTSSVPGKTQ TLNFYDLDSRLFFVDVPGYGYAKVSKSARAKFAAMIETYLTTRQPLRGVVLLVDSRHEPT ADDISMYQYLKYYQLRTLVVATKIDKTPKSKRLHVVKQINQRLDLNQTDTVIPFSAVTGE GYDAIWSWLSQTSGVGENE >gi|225002520|gb|ACIZ01000059.1| GENE 9 8478 - 8768 396 96 aa, chain + ## HITS:1 COG:lin2253 KEGG:ns NR:ns ## COG: lin2253 COG1694 # Protein_GI_number: 16801317 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Listeria innocua # 1 93 1 93 105 110 61.0 8e-25 MNFNEYQQKANRTLAGNEHVLTNLSLGLASESGEAIDLIKKYTFQGQDLDKVKLQHELGD VLWYLSQIALWADIDFDDVAAGNIKALAKRYPQSKK >gi|225002520|gb|ACIZ01000059.1| GENE 10 8897 - 9058 167 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229552145|ref|ZP_04440870.1| ## NR: gi|229552145|ref|ZP_04440870.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 53 13 65 65 70 100.0 4e-11 MALKINTQTNLNDMFDKFASIPSDKEQATGPDPKHHEKMTKKSDKDSAKKPKK >gi|225002520|gb|ACIZ01000059.1| GENE 11 9298 - 10755 1541 485 aa, chain + ## HITS:1 COG:lin2352_2 KEGG:ns NR:ns ## COG: lin2352_2 COG0765 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 279 481 8 211 215 209 53.0 1e-53 MTHLKRWLIALVAVFAAIVTLNMQTVQADDSLAKIQQKGTIVMGTSPDYAPYEFLVNKNG KNQVVGMDVEVARKIAKDLGVKLVIKQMNFSSLLVALQSGKVDMVLAAMSPTNARRKSID FSKTYYKSGQDILINKTDAKIYKDHKSFANKKVGVQNGSLQETLAKTQMKSSTTLGLTKV TDLILALKTHKVAGVVAEGAVAQAYTSNDDKLVEIPGHFNLSSDTMGTAIGFAKGSDSLV AAANKSLADIKQKNLIPQYLKTAGSYMKTNTEDTSMLHYWTYFLKGVEYTLLISAIGAFF GVLLGTIFALLRLSKHRLPHLIGVAYIEFVRGTPLMIQVMFVYFGIGIFIDIPALVAGLI AVSLNSAAYVAEIIRSGIDSIPIGQTEAARSLGLSERQTMTSVVLPQAIKNIWPALGNEF ISLIKESSIVSIIGVTDLIYQLTVVQTATYKGVQPILVAMVLYFVLTFGLSKLLSHFERK MNHAA >gi|225002520|gb|ACIZ01000059.1| GENE 12 10745 - 11491 560 248 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 245 1 242 245 220 44 2e-56 MQHKPLIQINHLTKKFGDNVVLNDISETIDQGDVIVVIGASGGGKSTFLRSLNLLNRPTA GEILFEGTNLVDLSEKQLDNVREKMGMVFQSFNLFPNMTVLENIKLAPLKVKTVTDEEAT KTAKELLEQVGLAEKADAYPASLSGGQQQRVAIARALAMHPDVMLFDEPTSALDPEMVGE VLKVMQDLAKTGMTMVVVTHEMGFARSVADQVWFMDGGKILEKGTPEQLFEHPQEERTQD FLSKILAQ >gi|225002520|gb|ACIZ01000059.1| GENE 13 11696 - 13504 1350 602 aa, chain + ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 1 594 1 592 603 620 52.0 1e-177 MASAHIEHKLSLLPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYFKSSHDGKVAAMVAQ VADFDYIVTSTNKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKITNERDPKIEITGTIR KDGGYYFGPYPNVYAAQETMHFIQKVYPLRRCNGYQGRPCLYYHMGQCLGACFRTVPEKE YTDQIARIKRFLNGNVSKAKASLTAKMERAAKNLQFERAAEIRDQLYYIEKTVEKQKIIS TDNTTRDLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRKN NVKPREVLVPAGLDNKVLADILEVPVRTPQRGEKRELMALAAKNSKIKLEDKFRLMELDN RTTVGAMKELMAALKLPMGHVVEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLDAD KTHNGADEAANTREVIRRRYTRLLKEHAALPDLILMDGGEIEMNAAKDVLENELNLDIPV AGMVKNNKHKTAALLFGHADEMINLDPKSQGFYLLERIQDEVHRFAITFHRQLHAKNSLA SRLEGIKGVGPKTRLKLLRKFKTITKIKEAPLEDIQELGISKRVAQALKLSLTADPTPAR RV >gi|225002520|gb|ACIZ01000059.1| GENE 14 13744 - 15717 1830 657 aa, chain - ## HITS:1 COG:FN1441_3 KEGG:ns NR:ns ## COG: FN1441_3 COG1299 # Protein_GI_number: 19704773 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Fusobacterium nucleatum # 317 650 1 324 328 308 48.0 3e-83 MDIRDLLLKNVMIMDLKGTTKEAVIDEMVAKYHAEGIVTDADEYRNDILKRESESTTGIG EGIAMPHAKDSAVTRATVLFAKSTKGVDFNALDGQPVHLFFMIAAPEGANNEHLAALAAL SSLLINPKLVADLKQAKTPDEVIDLFGKAQAEKAAKDKAEEEAEKAQEAKDKAAKQAEFK DEKRKERPFIVAVTACPTGIAHTYMAEAALKETAEKMGVDIKVETNGSEGIKHKLTDADI NRAAGVIVAADKKVAMDRFNGKKLLNRPVIDGIKKPQELIEETLKGQGQVFHAAGEANTE ASESEETSGGTVWNRIYKDLMNGVSNMLPFVVGGGIIMAISFILEQWLGKTSMWFTFTNN LGSFAFSFLVPVLAAYIAESIGDRPALMPGFVGGYMATVASASVVKAQNPAGFLGGLVAG FAAGWMIVGLKKALAKMPRSLDGMRTILLYPVIGLAIMGLLMFFIINPIFAAINGALINF LEGLGTGNAIIIGVILAAMMSIDMGGPFNKAAYTFAIGVYQASGFKDGRWMAAVMIGGMI PPLAIAVASTFFPKKFTLQERNAGLSNYALGLTFITEGAIPFAATDPLHIIGSSVIGSAI AGGLTQLWHVNVPAPHGGVVALLLTDQKFGFIMSLIIGTIIAALILGFWRPVAKENR >gi|225002520|gb|ACIZ01000059.1| GENE 15 15727 - 16641 535 304 aa, chain - ## HITS:1 COG:SPy0854 KEGG:ns NR:ns ## COG: SPy0854 COG1105 # Protein_GI_number: 15674887 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Streptococcus pyogenes M1 GAS # 1 304 1 300 303 299 50.0 6e-81 MIYSVTLNPSIDYVIELPRLNLGAVNRLAHDVKLPGGKGINVSRILQTLGLPTTAWGFLG GFTGTFIQDKLDELAMPCDFTKIKGDTRINVKLKAESETELNASGPAISETEIADFKAKL TNLKSGDVVIMSGSLPKGLPSTFYRDLIPLIHAHDADFVIDTTGQALLDTLSDHPLVVKP NHHELAALFNDAPYTSHEAIIKAGRRILDLGAQHVLISMAGGGALMIEQDHAWFGNVPKQ PAVNSVGAGDSMLAGFTGTFAQTHDVLESFKVGIACGSATAFSEDLATADKIAAVKQTIT INEV >gi|225002520|gb|ACIZ01000059.1| GENE 16 16638 - 17387 632 249 aa, chain - ## HITS:1 COG:BS_fruR KEGG:ns NR:ns ## COG: BS_fruR COG1349 # Protein_GI_number: 16078502 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 1 242 1 241 251 210 47.0 2e-54 MLTEERRQYILAQLQQHTVIKSKALMAALDASESTIRRDLDELEAAGELKRIHGGAKRVN GLGDEPDVASKSTQNLRAKQTIAHAAARQVEQDDLVFLDAGTTTAQLIPFLADLGVTVIT TGVDNASLLADYQIPTLMLGGMVKSATKALIGATTAEALHHYRFDIAFIGTNGIHPEFGN TTPDPEEAVIKRLAIHQARQPIILADPSKFEQVSFVKFADIGDATILTSSLQGLPASYQR YQNIKEVHS >gi|225002520|gb|ACIZ01000059.1| GENE 17 17637 - 18923 1166 428 aa, chain + ## HITS:1 COG:lin1572 KEGG:ns NR:ns ## COG: lin1572 COG0536 # Protein_GI_number: 16800640 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 1 428 1 429 429 461 58.0 1e-129 MFVDQVQVEVQAGKGGDGMVAFRREKFVPFGGPAGGDGGRGGSIILYVDEGLRTLMDFRY QRHFKAPAGGNGQGKSMYGRAAEDRRIAVPAGTTVTDADTGEVLGDLTAPGQELVVAKGG RGGRGNIHFVSPKNTAPEIAENGEPGQHRFIKLELKVLADVGLVGFPSVGKSTLLSVVTQ AKPKIAAYQFTTLVPNLGMVQLDDGTDFVMADLPGLIEGASQGVGLGIQFLRHVERTRVL LHLVEMDPENGREPLEDYDQIRKELGAYDENILKRPELIVATKMDLPGAAERFASFKAAL VDRGIDPANIFEISSLTHRGVMPLMHKTATVLKTAPQFEPKQEPVQSTEYKYTPEPALKV TRDSDGTFVLTGEKVERAFKMANLDHEDGVMRFARQLRSMGVDDALREAGAQSGDLVAID DFTFEFVE >gi|225002520|gb|ACIZ01000059.1| GENE 18 18964 - 20958 1380 664 aa, chain + ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 14 658 2 600 605 385 39.0 1e-106 MVGPQVKQTRKRKRRYIHGFDGLRTIGVIGVILYHLRPELFRGGYLGVPIFMVVSGYLIT DGLLIEFDRYRHIDFKSFFIRRFKRLYPALITVLFGTAAYITLFSQNLLHNLHMMVLTNL LYVYNWWQILNGQSYFARYANGESPFTHLWTLSIEGQYYLIWPFLVLGLLLLVKNRHQIA NIVLILAAVSGAWMAILYMMTVAHTSPAAFDPSRLYYGTDTRAFSILFGAALAFIWPSSR LSTHLPRKWVFSLDLIGTVSLVGLLTMVFTVDAQSSFLYEGGMVLFSILTTILVAVVAHP AAHFDRLLTNPLFSYIGSRSYGLYLYQFPVMIFWENRFRNIADHPVLYPVIEVILIVLIT EISYRLIEQPAAHFDYHKTWDFLKALVDPKKRMGMARWISYAAVIILAIGSVGLAKAPSA KAVGDNSPLAKQLKRHSESAKEKAKRLEAMRSSLSEQKKADKNKADESSSSRAQQSRYAS QAKTKPVNQDYERYGLTQIQLQQAQDVTFTAVGDSVMLDGEPGLQQLFPKAVIDAAVSRQ MINSIDLVRSYAEKGVLANIVVIGLGTNGPFSDDQLAQMMQAIGPDRQVFWINVRVPTRA WQNDVNSKLDAAQKQYKNLTVIDWFHKSDGHPDWFYNDMVHMNPTGNPEYAAFVAKTILE KIDE >gi|225002520|gb|ACIZ01000059.1| GENE 19 21173 - 22132 758 319 aa, chain + ## HITS:1 COG:L18686 KEGG:ns NR:ns ## COG: L18686 COG1234 # Protein_GI_number: 15672612 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Lactococcus lactis # 1 305 1 306 307 334 55.0 1e-91 MEIQFLGTGAGSPSKVRNVSSLALKLLDERNEVWLFDVGEGTQHQILQTTIKPRKIAKVF ITHLHGDHIFGLPGFLASRANQGGTEPLTIYGPPGIEDFVKTSLKVSQSHLSYAIKFVLL RHPGVIFDDQTFKVSFDRLDHRITSFGFRVEEKPHPGELLIDKVRAAKIPAGPVYASLKA GKTVTLPDGRTFDGHDFIGSAQPGRTVAIFGDTRMCRRALPLAAGADVLVHESTFGPDES QLAKQYYHSTNLQAAELAKRAGVGRLLLNHISARYLGPSVAMLEKSARHIFPQTHVVRDL EEINIPFASPQLQPTVSAK >gi|225002520|gb|ACIZ01000059.1| GENE 20 22310 - 23095 886 261 aa, chain + ## HITS:1 COG:lin2083 KEGG:ns NR:ns ## COG: lin2083 COG0300 # Protein_GI_number: 16801149 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Listeria innocua # 4 261 6 263 263 205 44.0 7e-53 MVKKHLTVVISGGSAGLGKAIGLEAAKNGATVVFLARRRDKLRQAQAEATALSGHPAYAF PVDVGDPVAIEAAVDQIHETVGPVDVLVNAAGFGHFENAFDTDMRLVERMFRVNVLGVMY LTKLLGRDMAIRGQGQIINVASMAGKMATPKSAIYSATKFAVIGYSNGLRLELKPFGVHV TTVNPGPIATDFFKAAGALDYLATVSWLALDPDQLARRIVGTFDHPVREINAPRVMSLGA KLYTLFPGIGDWLAGGMLNKK >gi|225002520|gb|ACIZ01000059.1| GENE 21 23109 - 23435 362 108 aa, chain + ## HITS:1 COG:no KEGG:LGG_01366 NR:ns ## KEGG: LGG_01366 # Name: not_defined # Def: integral membrane protein # Organism: L.rhamnosus # Pathway: not_defined # 1 108 1 108 108 177 100.0 1e-43 MKSQQRFIIGLVLALILIIFALLNGQGVSVNFFGIQLEWPLIVIIAVSVLIGAVVTWLIS TSAVASAKKQIKELQQRVTELTKTNKNEKPAPKPVQAPKETPSDTSKN >gi|225002520|gb|ACIZ01000059.1| GENE 22 23549 - 26155 1760 868 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 6 865 6 815 815 682 44 0.0 MNPDNFTQAVAEALGAAQQIAQVRHHQEIDIPHVMKSLVQPNQLAEQIYREAGVNIHGLN AAIDAAIDAEPVIEGASAYGQNMSQNLAQMLSDADTIKDEFGDTYVSTEALLLALYEQRY NTITRYLLDDAKVDAKKLRAVITKIRGGEKVTSKNAEANYKSLEKYGTDLVKEARSGKMD PIIGRDEEIRDVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKNDVPDNLKNKTII SLDMGSLVAGAKYRGEFEERLKAVLKEVKKSEGQIILFIDEIHNIVGAGKAEGSMDAGNL LKPMLARGELHLIGATTLDEYRENIEKDKALERRFQRVLVQEPTVEDTISILRGLKERFE IFHKVRIHDSALVAAATLSNRYITDRFLPDKAIDLVDEACATINVEMNSRPTELDVAERK QMQLEIEQQALKNESDPASKKRLENANAELANLKEKTNKLKAQWEAEKKDIRQLNEKKSA IDKAKHELEDAQSRYDLETAARLQHGTIPQLEKELQAMEHSDRPQSWLVQESVTANEIAA VISRETGIPVAKLVEGDRQKLLHLADNLHQRVIGQDEAVTAVSDAVLRSRAGLQDPSRPL GSFLFLGPTGVGKTELAKALAEDLFDSEKHMVRIDMSEYMEKASVSRLVGAAPGYVGYEQ GGQLTEAVRRNPYTIVLLDEIEKANPDVFNILLQVLDDGRLTDGQGRTVDFKNTIIIMTS NLGSEYLLDGVQKDGTVSQQAKDQVRQLIGKAFKPEFLNRIDDIIMFHPLSLDDVKKIAV KDLHELGTRLADQQISLDITPEAQTWLADKGYDPAFGARPLQRLITSAVETPLAKELIRG TIQPGQEVVITVADDQLQFKAKQVAAKS >gi|225002520|gb|ACIZ01000059.1| GENE 23 26336 - 26527 328 63 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598724|ref|ZP_03212138.1| Ribosomal protein L32 [Lactobacillus rhamnosus HN001] # 1 63 1 63 63 130 100 1e-29 MAVPARRTSKTKKRMRRGHIKLNVPNLQFDAATGEYRVSHHVSPKGYYKGAQVVKKSDDN ANA >gi|225002520|gb|ACIZ01000059.1| GENE 24 26696 - 27250 574 184 aa, chain + ## HITS:1 COG:no KEGG:LGG_01369 NR:ns ## KEGG: LGG_01369 # Name: not_defined # Def: hypothetical protein (TPR repeats) # Organism: L.rhamnosus # Pathway: not_defined # 1 184 1 184 184 328 99.0 5e-89 MADNKQFSDYLTQLQKAQFPRWADLPQFDLYMDQVIQYVNDIVTPLGFGEITSTMVNNYV KKGVIQAPVKKKYRPEQLANILVIAMLKPVFALDAIAKGIQFAKEGRPVAQAYDTFILTF ISAIEQANSDFNDTVAINRTVQPSTAATQHAVVSLAINAVLQKLMVEKLLTLTQVPANEK GKKA >gi|225002520|gb|ACIZ01000059.1| GENE 25 27247 - 28800 1371 517 aa, chain + ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 514 1 518 519 560 52.0 1e-159 MKLTILSTSDTHGFVLPTNYVKRDQNLPFSLAKAKTVLDAQKAMAEGPVLTIENGDWLQG SPLAYYAAKMNRKPEQLTQIYNAVGYDAGIIGNHEFNYGSDYLRQALATLNYPTLNANIT KAGQPAFGEPYKIFERSGIKIAVLGLTTAYIPHWEAPKHIADLQFEDVIATANDYVPRLR KEADVVIVAYHGGFERNLKTGEPTERLTGENVGYALTQIPGIDALITGHQHRQLAAIVNG VPVTQPGYRGEAVGKITLTLAQTTTGYQVTDQQAVLVKAGTVNPSAVIEQVAEPLNQVVE TWLDQPLARVEGDMRIHDPFAARVKEVPYIEFIQRVQMASTGADISGTALFNNEGCGFGS TITMRDVVTNYIYPNTLAVLRLTGAELKAALEQCATYFSLNAQGQLMVTPRFERPKPQHY NYDMYQGIDYTLDISKPVKQRVTKLTYHGKPVVSTQTYDVVMNQYRAAGGGNFAMFGPEK VIRENQKDMTELIADYLKAHPVLKAEADHNFTVVSSM >gi|225002520|gb|ACIZ01000059.1| GENE 26 28889 - 29749 843 286 aa, chain + ## HITS:1 COG:no KEGG:LGG_01371 NR:ns ## KEGG: LGG_01371 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 286 7 292 292 398 98.0 1e-109 MKFWKYGLIGLLALLLVGCGQQLSTTKATYGRNGLVATIKGSASGVDRVKYTSQAGNGSV PVKSGTFVVNVPVTDTTQQIKLTAGSLKREVNVKAGTSLGQYTAIATKFNQMLAVSSLSK ADQAKLKQGQAAAAELQKSAATMTPAEKLTAAQQAQTLKTLMAQATANTRGKQLPTTAKT GIQSILKTAGVNYRASIVNGKAMGFAVIVPLSVLKDSKKMQQFATGFGLLSTAVGANAKT VFSHFKKLTKDAKSKNNSTTIKTIKSNNVKFDVGYSTTDLYLYVTK >gi|225002520|gb|ACIZ01000059.1| GENE 27 29863 - 30057 263 64 aa, chain - ## HITS:1 COG:no KEGG:LC705_01386 NR:ns ## KEGG: LC705_01386 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 64 1 64 64 110 100.0 1e-23 MRYLPTIVWGVILGQVVGFLIGALSGSSYDPKTSAIVSVIFVVILFFFPPIMQHFAKSAE KPEH >gi|225002520|gb|ACIZ01000059.1| GENE 28 30153 - 33449 2839 1098 aa, chain + ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 1093 1 1108 1108 811 42.0 0 MTFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLK PLLGMQIEIADAKLLVIAENNTGYHQLLKLSTQIMLAQQPLAFADLLPLNGLAAVTLPDS PFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGVDEEHLEGTLPAFADTVKLPLLALGNVL YRDPTDAFTQKVMVAIETGSQLNFRDPVLTDAGPAWLKPPTDAAKPFVQAGLQAAVTQTE AIAARADVTIDFKQPQLPHYQTPDQTPSKDYLTKLAESGLAKRFHGQSIPPAYQDRLQYE LRVIIEMGFADYFLVVWDVMNYAHKVNIMPGAGRGSAAGSLVSYALAITEVDPIEYNLLF ERFLNPARAQMPDIDLDIPDNRRGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARV FGLSQFESNTWSKAIPNLFYIDLKTAYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHY STHAAGIVLSEEPLTDTVALQPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAAS HFVTRDTGKPFDPKAIPLDDQPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVA VNALYRPGPMENIDTFIARKNGQEPIAYPDPALAKILRPTYGVLVYQEQVMQVANVMGGF SLGEADLLRRAMSKKKSSVLAAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSH AVAYSKVAFWLAYLKVHYPAAFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSN GGFKLSQGKIRFGLLSIKGMRRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAP TLAGAFDQFSNNRAQTLANLDELINSVKLAGNDVGLFSMLAPKTIEVPEMPASERLEAEA EVLGVYLSGHPVDKYAPLKTQYRLINVSDLEEGRAVDILLLVRHIKRIRTKTGKPMAFID GQDATGNVSLTIFPNLYPTIENLSEDMVVLVNGRVEKRNDDLQLVVNRIQDAQPLLANLP TAELFIRMDAKDTAMRTDLLKKLQAAHGTTPVITVDTATRESILLDKRYWVKAQTELIDA LKTQFGANNVVLRKRQET >gi|225002520|gb|ACIZ01000059.1| GENE 29 33561 - 34520 875 319 aa, chain + ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 318 1 318 319 409 65.0 1e-114 MKRIGILTSGGDAPGMNAAVRAVARKAMHEGLEVYGINYGFAGLVAGDIFKMSESTVGDK IQRGGTMLYSARYPQFAQEEGQLRGVEQLNKFGIEALVVIGGDGSYHGALALTRHGFNTI GLPGTIDNDIPYTDFTIGFDTAVNTVVEAVDRLRDTAASHERTFVIEVMGREAGDIALWS GVAGGAEDVIIPEHDFDVKKIASKLQSSRERGQKHAVILLAEGVMHADQFAKELAAYGDF QLRATVLGHIVRGGAPSARDRVLASQMGAYAVELLLQGKGALAVGIENNKITAHDVRTLF DAKHHAELSLYTLAEELTF >gi|225002520|gb|ACIZ01000059.1| GENE 30 34580 - 36346 1805 588 aa, chain + ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 478 1 475 475 598 67.0 1e-170 MKKTKIVSTLGPASNTTDIIVKLIEAGANVFRFNFSHGDHEEHLARMNMVHEAEKITGKT VGIMLDTKGAEIRTTVEDTPNGKIEFHTGDKVRISMDASLKGTKEKVAVTYPGLYDDTHV GGHVLFDDGLIDMKITEKDEKNRELVTVVQNDGVLGGKKGVNAPGVAINLPGITEKDSND IRFGLDNGINFIAASFVRKPQDVLDIRELLEEKNALNVQIFPKIESQEGIDNIDDILKVS DGLMVARGDMGVEIPFEHVPIVQKRLIKKCNALGKPVITATQMLDSMQENPRPTRAEVND VANAVFDGTDATMLSGESANGEYPVESVAAMARIDEYTEAAMQDQDAFALKEYSNKNITE AVGQSVAHTARNLGVKTIVAATESGYTARMISKYRPKADILAITFSEKTQRGLMVNWGVY PIVADKPANTDAMFDLATKKAQDLGFAKEGDLILITAGVPVGESGTTNVMKVQLIGSKLV QGSGVGDESTIGKAVIASNAQEAAAKMQKGDILVVKTTDKDYLPAIEKAAALVVETGGLT SHAAVVGIAMGIPVVVGAENATSVISDGQIITVDSRRGIVYKGATNAL >gi|225002520|gb|ACIZ01000059.1| GENE 31 36574 - 37035 607 153 aa, chain + ## HITS:1 COG:lin1603 KEGG:ns NR:ns ## COG: lin1603 COG2707 # Protein_GI_number: 16800671 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 2 146 4 148 153 119 55.0 2e-27 MESWLFLLAILAIALIGKNKSLVIGVAVVMVLKLIPQTQHLLKLLQSQGINWGVTVISAA IMVPIATGEIDFKELLHVIKSPAGWIAIGCGVLVAVLSAKGVGLLAVSPEMTVALVFGTI LGVVFLKGIAAGPVIASGMTYVILTVFNLLPGR >gi|225002520|gb|ACIZ01000059.1| GENE 32 37069 - 37953 457 294 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 5 283 3 279 285 180 36 2e-44 MKFNGQVVTAQVMDHNEKEVFAQYEGVTLAIDRLELPTLPEIGSQLKGLAYENKHGQARL TTKLPKVGRDHYAFAPVVEVRRDLGVFVDIGLPDKDIVVSEDQLPELSRLWPQRGDRLMI ALTIDKKDRLWGNLADETIIRAVANRAKPDQMNADVTATAYRLKMAGTRVLTDDFYLGFI YPSERDVEPRLGQVLHARVIGVSDQGELNLSLKPRAYQAIGDDAAMILAVLQHDPAGKIA YTDKSDPAVIKQVFGISKGAFKRALGHLLKAGLIKEEAGYTVLLDSNSQPSQEA >gi|225002520|gb|ACIZ01000059.1| GENE 33 37955 - 38836 698 293 aa, chain + ## HITS:1 COG:lin2069 KEGG:ns NR:ns ## COG: lin2069 COG4974 # Protein_GI_number: 16801135 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 1 293 1 297 297 285 49.0 9e-77 MHGLIADFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPEDFGVIQAFLKHQN DTKAPASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAK PDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPISPQ AADWVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEKDVTPHT LRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPRG >gi|225002520|gb|ACIZ01000059.1| GENE 34 39028 - 39414 286 128 aa, chain + ## HITS:1 COG:no KEGG:LGG_01379 NR:ns ## KEGG: LGG_01379 # Name: ribT # Def: RibT protein, riboflavin biosynthesis acetyltransferase (GNAT) family # Organism: L.rhamnosus # Pathway: not_defined # 1 128 1 128 128 231 100.0 6e-60 MLVKYKNDYEKIAMGLLSFIPDLKDVGHLKTELKMYTEDDSHALYLYKHHHDFVGVVGVE LSADFVLVRHLSFSPNFRDEATAFAALAELTKLFPDKKLMGALEHASLIAAFNKFRKEDD HGTDTRAE >gi|225002520|gb|ACIZ01000059.1| GENE 35 39389 - 40114 592 241 aa, chain + ## HITS:1 COG:BH1560 KEGG:ns NR:ns ## COG: BH1560 COG1354 # Protein_GI_number: 15614123 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 7 240 8 248 260 159 41.0 6e-39 MALTLVLNDFSGPLDLLWHLIRTNEVDIYDIPIAEITTQYLDYLHQMQDLALDVAGDYFV MAANLMVLKSRLLLPQPEPETTAPDEPTDPRADLVAQLLTYQVYQEAAKDLKQREAKRAQ AFAKPTTLPDEKMAVPLAPGTVKLIDLQAAMARVMKAQQAARQTIAHIETEPVSVEKRIG EVLRALQQDGQCLFADLLAVNSVEQVVTTFLALLELMKNDQVICEQDAPFDPITVTLKEA A >gi|225002520|gb|ACIZ01000059.1| GENE 36 40114 - 40731 627 205 aa, chain + ## HITS:1 COG:SPy0367 KEGG:ns NR:ns ## COG: SPy0367 COG1386 # Protein_GI_number: 15674517 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pyogenes M1 GAS # 5 177 7 179 183 149 47.0 2e-36 MEPVLEAILYTAGESGVTLGELASILEISESAMRQQLEAYQQRLAADDQRGLQVQQFADR YYLLTKPAFVSAIKKYFAGPPAAGLSQAALEVLAIIAYQQPITRIEIDEIRGVQSSGALT TLASRQLIKEAGRKEAPGRPILYATTQFFLDYFGLNQLADLPPLADAPEDTGEVDLFTAF RDDDQSQTAEDDKKMEQNQQHDNQK >gi|225002520|gb|ACIZ01000059.1| GENE 37 40715 - 41461 567 248 aa, chain + ## HITS:1 COG:BH1576 KEGG:ns NR:ns ## COG: BH1576 COG1187 # Protein_GI_number: 15614139 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Bacillus halodurans # 6 240 2 236 242 275 61.0 7e-74 MTTKNERLQKVIANAGIASRRHAETLIASGHVKVNGHVTTEMGIKIGPHDTVEVDGVPIG KEAKRYFLFYKPRGVISAVEDNKGRKVVTDYFEDVQERLYPVGRLDYDTSGLLVMTNDGE LANHLMHPRYALEKKYVAKVEGIPNRPALAPLKTGVSIDGKMTAPAKVEILSTDKAKKTA IVALTIHQGMNHQVKKMFKAVGFPVIKLSREAYGNLTLAGLQPGEHRPIKPQELHDLRQL TGEQEEAH >gi|225002520|gb|ACIZ01000059.1| GENE 38 41758 - 42336 590 192 aa, chain + ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 10 187 9 186 203 104 32.0 1e-22 MASRSKVHRLVGIALLAAIGYVLMMFSFPIIPAFPFLKLDLSDLVVLLGGLLYGPVGGIA VAFVRSLVHFALTGGGVVNLIGDLAAFIASVGFLLPVVYTIRGKHRIWRQIEGLVLGTLS LTVVMSVLNWLVITPMYMAVFNFNLGMSLTKYVLIGVVPFNLIKGVVISVAFFAIAKALA PWLARQEMQMSH >gi|225002520|gb|ACIZ01000059.1| GENE 39 42507 - 42764 192 85 aa, chain - ## HITS:1 COG:BH0209 KEGG:ns NR:ns ## COG: BH0209 COG1141 # Protein_GI_number: 15612772 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Bacillus halodurans # 1 75 1 75 82 65 41.0 2e-11 MALYGRVERPECIACGLCQMLAPALFDYDEAGIAYYKPDRNTGTKPLDDHAKIDFRLAYQ RCPTHAIKRSDHPFNTAPFTPTKAE >gi|225002520|gb|ACIZ01000059.1| GENE 40 42844 - 43833 709 329 aa, chain + ## HITS:1 COG:no KEGG:LC705_01400 NR:ns ## KEGG: LC705_01400 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 329 1 329 329 608 100.0 1e-173 MLTDLAIQFFDTQPRRERAVFGLLAGKKTISNLYAALTHQQLQWLQLYPSLSKELFLQTV AQLKMHGQLTTTETGLVLTAKGQQFQRQAAKRVPLPTYYQPWMHLSKFAPRFFLAIQVLS EASYHSQAYRPISTDWANQQAVKRWYRQLNIESAIADLIALFERLPPQLADILAANLIGH EYAGQAQPPTLSARFRRINALAALVNEIAGIKDEGNPWYELWGGPQDLVTRPARYSLQQV QAGVGLKAIASKSHRKLSTVKEHLLLAAIMGESLPVEQLIPQPIHQALDQIDHWQDHQVL LDAVPASDFFQVRLFQILKLQGRWSRVAT >gi|225002520|gb|ACIZ01000059.1| GENE 41 43820 - 45229 852 469 aa, chain + ## HITS:1 COG:lin2056 KEGG:ns NR:ns ## COG: lin2056 COG0514 # Protein_GI_number: 16801122 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 4 435 3 434 467 332 40.0 1e-90 MSQLETALAQHFGFKQFRPGQKAIIESVLSGRDTLGILPTGSGKSLCYQLPTLINHKPTL IVEPLIALMHDQVGRLQAAGEKRVLALSGQIAPPQFAQILAYLNVYRYLFISPEMLQRTD VMSALKQLDLGLLVIDEAHCISQWGPDFRPAYLQLGRVRAQLHVDAVLALTATAPNQVRS DILKQLAMQNPNTIADSVDRPNIFLGVEMCQNEQEKHQRLDQLLQANVGPTIIYCATRAA AENLATVLKNAGLKAAFYHAGLDSHQRDLIQRQFQFDQLQVICATSAFGMGIDKANVRLV VHLYVPESLEAYYQAIGRAGRDGAASLAAMIVTQDDLNRSRGLAGMLPDQTMIQTVFAHP DIYRDFDDPQINLIEAYIAAGFSLAQTQQQLQHRLAEKQTSFMAMAAFVNESGCRRAWLL KHFDSPSISHHAFCCGPVTAEVLEKLETANVSAQLPPKHWQAVFRQIFR >gi|225002520|gb|ACIZ01000059.1| GENE 42 45289 - 45930 543 213 aa, chain + ## HITS:1 COG:no KEGG:LC705_01402 NR:ns ## KEGG: LC705_01402 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 213 1 213 213 230 100.0 3e-59 MAEKDKNQHDNADQEQHQGEDANKPWETLFDDDRDDQGNLSRVATRKKRQGSSKLTWILA ILLILAVLAPIIYYKVMDNQGSSGGNLSNDKVVIQSAKKTSHSSKTKKSAKSSKTSKTSK TSAKEASSSQQATSAQASSQVSQAPSASQNQEQASASAAPSQASTAGNSYTVKSGDNLYR IAVNHNMTLDELLQLNGLSANSGITPGTVLKVK >gi|225002520|gb|ACIZ01000059.1| GENE 43 45996 - 46664 627 222 aa, chain + ## HITS:1 COG:SP1603 KEGG:ns NR:ns ## COG: SP1603 COG0283 # Protein_GI_number: 15901443 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 219 4 222 223 222 59.0 3e-58 MQIAIDGPASAGKSTIAKLVAKKLGYIYCDTGAMYRTVTYMALKDQLPLDDETTILQHLS QLQIRFAPGDPEQRVFMNDEDVTLAIREPDVTNNVSQVAALPGVRTELVERQRDIAAKHD IVMDGRDIGTTVLPHAALKIFMVASVSERANRRYKENVQKGIKTPLATLEAEIAERDRKD SQRKVSPLRQAADAIRIDTTSMTIEEVVAKILALVAEKKQAD >gi|225002520|gb|ACIZ01000059.1| GENE 44 46749 - 48059 2197 436 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598703|ref|ZP_03212117.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001] # 1 436 1 436 436 850 100 0.0 MSDNNVNENTETMADALKSVTTVKIGDTVKADVLAVEDKQLIVGIEGTGVEGVVPIKELS TQPIDDIHDVAKVGDKLDLVVLSTVGKDKENGQFLLSKRRLEAQKVWKEIQAKYEAGETI TAPVTSVVKGGLVVNAGVRGFVPASMVEDHFVEDLNQYKGKELEFKIIEIEPSENRLILS HRAIVEASKAEARKEIFAKIQPGDVVEGKVARLTNFGAFVDLGGVDGLVHVSEISFDHVD KPSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAPAGSVLTGTVKRLTT FGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLSVDPDAHRLALSIKALQ DRPAGSSDASEGHEGGNNGNQERRRSSRPRRGNDRHQSSSIPAEYQQDDSGFSLGDILGD ALKDAAKGNDDQDDNK >gi|225002520|gb|ACIZ01000059.1| GENE 45 48206 - 49513 1290 435 aa, chain + ## HITS:1 COG:SP1709 KEGG:ns NR:ns ## COG: SP1709 COG1160 # Protein_GI_number: 15901543 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 1 435 1 436 436 633 72.0 0 MVLPTLAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKSEWLGKEFAVIDTGG IDLGDEPFLAQIKDQAEIAIDEADVILFLTSIEAGVTDADERVAQILYRANKPVVLAVNK VDNPERRQDIYDFYSLGFGEPLPLSGTHGIGLGDVLDAVLAAFPNEASADEDDSIKFSLI GRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEADGETFTMIDTAGIRKRGKVYE NTEKYAVMRALRAIDRSDVVLFVINAEEGIREQDKKVAGYAHEAGRGIIIVVNKWDTLEK DNRTMKDFENLIRQEFQYLDYAPIIFVSAKTHQRLQSLPAMIVEVSENQTRRIQSSVLND VLMDAITVTPTPTVNGKRLRIYYMTQVAVKPPTFVVFVNDPDLLHFSYERFLINQLRQAF DFSGTPIHVIARKRK >gi|225002520|gb|ACIZ01000059.1| GENE 46 49747 - 50022 361 91 aa, chain + ## HITS:1 COG:BS_hbs KEGG:ns NR:ns ## COG: BS_hbs COG0776 # Protein_GI_number: 16079336 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Bacillus subtilis # 3 90 2 89 92 116 78.0 9e-27 MANKAELIESVASATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARK GRNPQTGAEIKIPASKVPAFKPGKALKDAVK >gi|225002520|gb|ACIZ01000059.1| GENE 47 50205 - 51470 1365 421 aa, chain + ## HITS:1 COG:lin2036 KEGG:ns NR:ns ## COG: lin2036 COG0457 # Protein_GI_number: 16801102 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Listeria innocua # 1 415 1 417 417 247 35.0 2e-65 MSYAKKMLDALEAGQMETARQLFTQVLAHDDDETQYNLAEELYALGFNGQAKRLYQGLLG RYPEQGDLATALADIAVSDGDADAALNYLSRIQPDDPAYVQSLISAADVYQSLGLYEVSE QKLLKAKQLAPKEPVVTFALGEFYFDWGHFGQAIAAYNELLAAGTTELAGVNIEARLAAS LAQTGQYEDAVAAYEDVGVDALDLNGRFELGGLYLQLHDPAKAIANLQAVIDTDPSFANA YLPLATAYEAQNQPEKALDTVQAGVMVDDTNPDLYALGGKLALSEDNPDLAETYLQKALK IDPEDQGNMLAWSNFLVQEERDQENIDFLSRIDQSGDVDPQIYWNMAKSYDRLDNVQKAR ENYLLAFNRFQDSPDFLHDLIDFFQSTGARTELKAALVRYLKLVPTDDEMQMRLDDLNDE T >gi|225002520|gb|ACIZ01000059.1| GENE 48 51489 - 52367 929 292 aa, chain - ## HITS:1 COG:lin2023 KEGG:ns NR:ns ## COG: lin2023 COG1284 # Protein_GI_number: 16801089 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 10 285 9 284 288 273 47.0 2e-73 MSRNTRIGLDLLVITLGCALYGFGLVYINIANHLAEGGVTGITLLIRYWWGLDPAYSTVL LNIPLLIVGYKFLGKRALAYTIYGTLMLSAWLWIWQRVPLSIDIHHDLFISGVLAGLFGG FGSGIIYRHGGTTGGTDVVARILEQQTGVPMGRTLLIFDAIVLTVSLTYLNIELMMYTLL GAYVFSRIVNFTLDGAYAAKGVLVVSDHSQAIATAIMDELERGTTFLHAEGGFAHDRKQV VYAVVASSEIAHTKRLIEAIDPRAFISILDVHEALGEGFTYQKKRRRLLFGH >gi|225002520|gb|ACIZ01000059.1| GENE 49 52468 - 53664 890 398 aa, chain + ## HITS:1 COG:SPy0866 KEGG:ns NR:ns ## COG: SPy0866 COG0617 # Protein_GI_number: 15674894 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pyogenes M1 GAS # 9 382 4 383 397 329 47.0 6e-90 MQLDLNQPDFKAAIPILKKIEAAGYKAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRI FKRTVDTGIEHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTI NALAVRHDGTIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLGFHIEAT TKAAIAANAPLLKHISVERIAAEFNRLLVGIDRRAGMQDFLDTHLFAYAPKLAPHQAALQ QFSELPNQAFTSIASGWTALIFMLKVAPESFLPAWKQSNDLMGLVDQAVTLLRKMPTPTA WDLYSAGSAAVAVVSEVAALMDHQFVPASLTTAYEALPIHSKKTLALTGRDLIQAGVRPG PAMGKILHQIEYRVVDGSLPNDSKKLLAAAIEMSREPS >gi|225002520|gb|ACIZ01000059.1| GENE 50 53790 - 54245 475 151 aa, chain + ## HITS:1 COG:no KEGG:LGG_01395 NR:ns ## KEGG: LGG_01395 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 151 1 151 151 297 100.0 1e-79 MAEHVFEQLVFHFRNGDEWTVQHDELADVWISRVTTSYGRIHGGQIQEIHPCKSFKVEIL PEADHVKSSDINTGSLEMGMFGRATKYQDIEKMDLVFDDQTKKQVQIYFPFKQKDPSGLD NEYQTSKLAKNGHLYIVIDAQHTVDDEYPRI >gi|225002520|gb|ACIZ01000059.1| GENE 51 54394 - 56307 1503 637 aa, chain + ## HITS:1 COG:lin1989 KEGG:ns NR:ns ## COG: lin1989 COG0488 # Protein_GI_number: 16801055 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 631 1 628 630 601 50.0 1e-171 MQTLTAQGLSKAYGDKQLFNQIDFLINEGERIGLIGVNGTGKTTLIRSLAGMESVDAGTI KTPKQYRISYLAQIPELDPDLPIMDAIYLGDSPVFQAIRQYERALAAYTKDPLNQAKTDA YTKADAKMTQEDAWSAETDIKTILTQLHIGDLTARVGSLSGGQQKRVGLAQVLIESPDLL LLDEPTNHLDFDSIAWLENYLSHYRGALVVVTHDRYFLDRVTNRIFELDRGRLFQYQGNY QAYVAKKAEQLEAEKSAGHKQAQLYRQELAWMHAGAQARSTKQQARINRFKALQKAKDEA PAPDQQLDPIQIASTRLGKKVIEIHDASLRFDQQVILNHFDWLVQPNTRIGITGQNGAGK STLLNIIAGKQALDSGTIELGETVRLGYYTQLNTNLDPKKRIITYLQEVGEEVVQADGQR VSVTQMLEQFLFPRSMHGTLIGRLSGGEKRRLYLLQVLMRQPNVLLLDEPTNDLDIATLT VLEDYLDHFPGTVITVSHDRYFLDKVADQLLIFDGNGRIERAVGEFSDYLAKQKPQSAAS KTNSAAAKPKAPAKKAAPKQKSKLTYAEQIEYDKLQQELDELDEQLAKVKAEMAQVNGED YVKLGDLQAQLDAINKDIDQKFDRFAELDQYVSSSER >gi|225002520|gb|ACIZ01000059.1| GENE 52 56324 - 57274 626 316 aa, chain + ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 6 316 4 314 314 462 69.0 1e-130 MLEQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSE LLWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHE EMAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRL IVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLV AHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIK LLNYDPYPAIKAPVAV >gi|225002520|gb|ACIZ01000059.1| GENE 53 57391 - 57882 655 163 aa, chain + ## HITS:1 COG:lin1987 KEGG:ns NR:ns ## COG: lin1987 COG0262 # Protein_GI_number: 16801053 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Listeria innocua # 1 161 1 159 160 121 38.0 6e-28 MTAFLWAQDRDGLIGKDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESFPKRPLPERTN VVLTHQEDYQAQGAVVVHDVAAVFAYAKQHPDQELVIAGGAQIFTAFKDDVDTLLVTRLA GSFEGDTKMIPLNWDDFTKVSSRTVEDTNPALTHTYEVWQKKA >gi|225002520|gb|ACIZ01000059.1| GENE 54 58017 - 58658 574 213 aa, chain - ## HITS:1 COG:L97827 KEGG:ns NR:ns ## COG: L97827 COG1272 # Protein_GI_number: 15672479 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Lactococcus lactis # 6 213 7 216 217 160 46.0 2e-39 MRVSKSSHYEFNNEMFSAITHAFALGLAVTGTIALGIKGVNSGSQVELFSLLGFGVSLML LYTASTAFHGFYFSKARHVLQVLDHSGVFILIAGSYLPYCLVAIGGKLGIGLLIAIWALC LGGIAYKLFFLNRFKHLETMIYVVLGWLCLVGMVPLWHHLGPVGFWLLVAGGVAYTGGAM LYLQKGIPYIHVIWHLFVILGSLCMYLSIYFYL >gi|225002520|gb|ACIZ01000059.1| GENE 55 58900 - 59742 734 280 aa, chain + ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 275 1 273 279 246 46.0 2e-65 MANIKIVTDSSVQLTPEEISQHNITVVPLTIMIDNTVYIDGETITREDFMDEMAAAQNLP KTSQPAIGTFTDVFDKLTADGSQVLSIHMTETISGTVNSARQAAQLAKGDVTVIDSQFTD RSMAFQVLAAAEIAEAGKDMPTILDKLKQIRDHTILVLGVTNLDNLVKGGRLSRVSGLIS SFLNIKVVLQMEHGELKALRKGRGMKTINNFVTETISKMAKLTDIQSIGVSTAGAKEIGE DIGRRLAEVLPNVPILVRPTDPVIATHTGPGAFAITYYTD >gi|225002520|gb|ACIZ01000059.1| GENE 56 60005 - 60850 744 281 aa, chain + ## HITS:1 COG:L99502 KEGG:ns NR:ns ## COG: L99502 COG2755 # Protein_GI_number: 15672481 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Lactococcus lactis # 35 278 45 287 288 184 40.0 2e-46 MRTLKNFFISCGVLLLACLLAFGGWQLFGPVSSPSEVKVVANTPKHLQLTALGDSLTYGV GDATNNGGFVGLTKGELEATGQYQVTTKNYGVSGNTSGQILTRVNKQPKIRADLKRANII TVTAGGNDLMHVLQKHFLTLSEKQVTAGSVAFQKRLATLLTTIRKENPTAPIYVFGIYNP FYVYFPKMTAMTNSVKAWNQATQKTLQQFDRTYYVDIDSVLSNGETAANKASAKEALKEA TSGDGNPLIFSQDHFHPNNAGYGQMTKQLMKQMKATKKAWE >gi|225002520|gb|ACIZ01000059.1| GENE 57 60855 - 61496 469 213 aa, chain + ## HITS:1 COG:lin1975 KEGG:ns NR:ns ## COG: lin1975 COG4698 # Protein_GI_number: 16801041 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 210 1 202 204 102 31.0 6e-22 MQAKKRSLQRNAAKQKAVRTGINWWKWLFLILVGLLLGTGIWFTKTALMPVKINSAPQTA MTSNDPVFTVKVTKNSANRIMAHYLKSYLKDSKIKYAVTLGTNEAALSGSFKFLGNAVKF QLTFDPLVLKNGDVLLKAKNLNIGALPVPISFVMSYIGNSYKIPKWVSLDSKAGTVVLKL SQFKLQNGMTLKANKLDLTNDDLEFAVYLPDEE >gi|225002520|gb|ACIZ01000059.1| GENE 58 61522 - 62040 567 172 aa, chain + ## HITS:1 COG:SPy0466 KEGG:ns NR:ns ## COG: SPy0466 COG0225 # Protein_GI_number: 15674584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 4 170 2 168 169 227 67.0 7e-60 MKKETAIFAGGCFWCMVEPFEEQPGILNVVSGYTGGHVANPTYEQVSSHTTGHTEAVEIT FDADVIDYPSLLNIYWQQTDPTDAMGQFQDRGDNYRPVIFVKDEAQRQAAEASKAALEAS GRFSDPIVTKIESAKPFYPAEPEHQQFYAKNPRRYAMEHAQRQAFIDKNWKD >gi|225002520|gb|ACIZ01000059.1| GENE 59 62043 - 62285 253 80 aa, chain + ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 72 1 72 77 67 51.0 6e-12 MHRTFYEYLMTLRNPNDHSEVAEFAKNAFLDQSFPKHEKDYHRLSDYLELNGNYLPTMAI FDETYRDYEASESTGGDSYQ >gi|225002520|gb|ACIZ01000059.1| GENE 60 62239 - 63696 1356 485 aa, chain + ## HITS:1 COG:lin1965 KEGG:ns NR:ns ## COG: lin1965 COG0793 # Protein_GI_number: 16801031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Listeria innocua # 52 479 61 491 496 310 42.0 6e-84 MITKPVKAQEAIHINKHKVPLWAVIVLFLVALGGGAAGGYALSYQQAQQSVLKTGVPKAL APVISAYETVTNNYYKQVSTTKLTDGAIKGMLSSLDDPYSVYLQNNDKTNLDDTISASFG GIGATIQQDHNNLSIASILPGTPAKKAGMKVGDVLLKVNGKDVSKETVTQAVAKIRGKIG TTVAVTVKRGSKQATFSMKRKKITVDTVTGKLAPANKQVGVITISTFSEPTVKQFKATVK KLRKEGAKSFILDLRQNPGGMMTAALSISSMFSKNGQTVMQIEDRNGAKEVYKAGKKLDG GFKVTEKTAVLIDGNSASASEITAAALHQNSQIPLVGEKSFGKGTVQNVGEMSSNKELKL TVAKWLTPDGTWINHKGLTPDVKVAYPAAAKITLINATQLKPGDKGSDVKSLQQMLKALK IGSATVNGQYDDATQAAVKSFQEANKLDASGTADQDTLAALAQKLSDQLTKDDPMVAAAI KEVTK >gi|225002520|gb|ACIZ01000059.1| GENE 61 63955 - 67069 1001 1038 aa, chain + ## HITS:1 COG:no KEGG:LC705_01422 NR:ns ## KEGG: LC705_01422 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 37 1038 1 1002 1151 1986 99.0 0 MQTLDFKEMITELQSKIPLYRLMLLNAPTGIGKSYSVIQALCQYAVEQENFRAFFVTDQK KNLKLQDFEAAWNQVADEHKGTFSERIGVVRSLEDTVERLIHDWDHKKIPGMYRETPIFK KNIEKLRKTFQCYKMLQNDAIDSKTSWNLLNNAEYQVRCAVIAVLGEKSHANIKPILDTK SDNLQIKLNPTQKNTIRDYVLKQAKADSEWLNNTFPTIDLDKRKIIILTTSKFIKGYTPF FEKSSKSFQFSPILSNSLVVLDEFDSTKKQILDNSIEDALKVQVDLLPLFDALYEGLSKI NNKKLPDQLIKSFTVRDTFRKIMKDANALRSEFKLDFLYKTQKKQGNSGFVIHFAQTDLI SKGEKLHAYFDENLRQVVVGEKIRDDLHFHRMLPRISAFLRGVSGFILQRAREYQQLRNR KLSPIDEAMTIEDACYTVYNALGLSQVQARVLLSLSYTFSNQGGIKLSYYPHSSRRFQQR GLSLFQFTNDAQHELRAEINASFFSVTPERFLLNILSKANVLGLSATATLPTVLDNYDLE YLRDMLGPRLLNGADYLSKTTREEFDFKARYIKGNVHIKPEISGINRSFSEILETDRSSV DKTDIRTLDAILEQKISMVCAGGRKGGKDYYRQRYLNLFNSFKIFLNDPLMTSFLGLQSL LPSGGSEMNEQYIIDTFEKLKQRIGSSTAINTELRIVSSRKSGSIEEQLENALSLPSNQN KRVYILSAYQTIGIGQNLQHQMNEFERKNVINIAPKNAAKDDPRQKTVDLAGVYLADVTH ILGSNLPFKMDASGLRTVIERQYLLDNNEISVDDLMTFLNYLQKQIPQPHPKNARSLYVS YSRTIIQALGRMNRSFNKMPTLRIIVDPQVISNITGSGIDLSGTSLEYRTLLEFSGRQNP NYERSRVEHAKANATFYTYRDLFLMALYLQKDPETAQFYRRLRLFYAQHPTCSNKELIES KIIREYQDERGLQYLCNERSCNSYEVKAPKRDSGHFDFGGSGMEISAEASGLLAMCHFPG LKEAFEAEGIATEWKPNE Prediction of potential genes in microbial genomes Time: Wed May 25 19:52:25 2011 Seq name: gi|225002519|gb|ACIZ01000060.1| Lactobacillus rhamnosus LMS2-1 contig00063, whole genome shotgun sequence Length of sequence - 3551 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 449 302 ## LC705_01422 hypothetical protein 2 1 Op 2 . + CDS 424 - 1767 409 ## LC705_01423 hypothetical protein 3 1 Op 3 . + CDS 1773 - 2567 145 ## LC705_01424 hypothetical protein + Term 2588 - 2634 -0.4 4 2 Tu 1 . + CDS 3256 - 3489 132 ## LC705_01425 hypothetical protein Predicted protein(s) >gi|225002519|gb|ACIZ01000060.1| GENE 1 3 - 449 302 148 aa, chain + ## HITS:1 COG:no KEGG:LC705_01422 NR:ns ## KEGG: LC705_01422 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 148 1004 1151 1151 305 100.0 2e-82 ILNPIQFYNYCGFIGEFSGKFMIQKIFNIESDVFHDLENNELFDFQWQGEVAIDFKNWHA MPRVNADKEREKVEDKLNRLELNTKKKWRAIIINVVAINQGKLIMTVDGKILEVSGLITH DGQIALTTEQQFQIGRFFNNNADNGTDN >gi|225002519|gb|ACIZ01000060.1| GENE 2 424 - 1767 409 447 aa, chain + ## HITS:1 COG:no KEGG:LC705_01423 NR:ns ## KEGG: LC705_01423 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 447 1 447 447 879 100.0 0 MQTMVQTTKLDYGINMLQLQADFHFLLVKVANNAYASYNRLIGSCMPQALTAIGKGKYLL MFKELPMLSHDDNLNVREILLENKSQFRIFPNHLLQLLVNEQTANSPGLSEASKTPELLV VKENWCQQCSDMRLQCFAINVKVNWEQDLELRVQTYTETAEFKWDKPIYKIDAEHERLVR CYQPTNGPYFVRGNRKRNRNSVEFLSLQDESSFLQSKVGIAQTVLNNLNRNEKAYLTRPV TFHKSLVEQYSRTKLNETQAIWKQIAGSQLTIYAQPDDKLSTGLADRMAIELMKSYIVKE SKIQIKRMSKAQSGLNIQVIRDEREGTAKDYYEISAKDQIIQHVTVEKFGNYRNGDEEVR WKPSVTGKDKDPGRDVSIIKLIQELCIKRDLARKRLEFVEEALAIKTLAFSFYYFYFLHE SPDPEVMVIKLSFTSKKEMVFSKKRYL >gi|225002519|gb|ACIZ01000060.1| GENE 3 1773 - 2567 145 264 aa, chain + ## HITS:1 COG:no KEGG:LC705_01424 NR:ns ## KEGG: LC705_01424 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 264 1 264 264 505 100.0 1e-142 MEQDDEFTRVCQLVFFSIFSAKKQFAWDSVECVVEFEGNQVLIQQLNRTVMPDGDRIRKQ LSLNNPKRILSREKILNELNKLRSLISDNEQLAAAYKILQQVIVGMPVSFTLKELDTAAR AQDLTPRKNGMKQVNRFLEANASFTLKTTLQREMPNSPLTGMKWIGLTRIEDSNLGFNAF YFVGSSRSLQTRIPRAVTLRRLLPLTGDDEMIDNLFPKLAAMMSVEFVRSGQYTVVPYPV KYLREFWLSEQRKYPEYRRSKNRQ >gi|225002519|gb|ACIZ01000060.1| GENE 4 3256 - 3489 132 77 aa, chain + ## HITS:1 COG:no KEGG:LC705_01425 NR:ns ## KEGG: LC705_01425 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 77 160 236 236 160 100.0 1e-38 MPFIVASLQEQIKLGVDTSVCYCIGSGENFKVLTSINQTYHFFGSIVPLEHPRYVMQYRF KDRARYIQKYVAALNCK Prediction of potential genes in microbial genomes Time: Wed May 25 19:52:40 2011 Seq name: gi|225002518|gb|ACIZ01000061.1| Lactobacillus rhamnosus LMS2-1 contig00064, whole genome shotgun sequence Length of sequence - 8191 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 1, operones - 1 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 8/0.000 + CDS 82 - 813 566 ## COG1161 Predicted GTPases 2 1 Op 2 2/0.000 + CDS 797 - 1555 700 ## COG0164 Ribonuclease HII 3 1 Op 3 13/0.000 + CDS 1603 - 2418 785 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake + Prom 2442 - 2501 6.6 4 1 Op 4 6/0.000 + CDS 2663 - 4747 1521 ## COG0550 Topoisomerase IA + Term 4755 - 4799 5.3 + Prom 4750 - 4809 2.5 5 1 Op 5 5/0.000 + CDS 4917 - 6236 1050 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation + Term 6250 - 6277 -0.8 + Prom 6357 - 6416 3.7 6 1 Op 6 4/0.000 + CDS 6436 - 7332 902 ## COG4974 Site-specific recombinase XerD + Prom 7367 - 7426 2.2 7 1 Op 7 . + CDS 7451 - 7975 558 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit Predicted protein(s) >gi|225002518|gb|ACIZ01000061.1| GENE 1 82 - 813 566 243 aa, chain + ## HITS:1 COG:SPy1161 KEGG:ns NR:ns ## COG: SPy1161 COG1161 # Protein_GI_number: 15675137 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 1 241 44 282 282 236 46.0 3e-62 MLDELVGDKPRIIILNKQDLADPVLTNEWVRYYQTQGFAAIAIDAQHAKRLQQIPQAAAK LMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRKNIAVTGNKPGVTKNQQWLK ASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDVVGLYGLTYFMAHYPEALK KAYHLTDTDLQAAPHEVLVKLTKTQGFGEEFNRMAERLIFDARQGKLGRFTLEKPGELDA DAE >gi|225002518|gb|ACIZ01000061.1| GENE 2 797 - 1555 700 252 aa, chain + ## HITS:1 COG:SP1156 KEGG:ns NR:ns ## COG: SP1156 COG0164 # Protein_GI_number: 15901021 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Streptococcus pneumoniae TIGR4 # 1 247 1 250 259 217 47.0 2e-56 MPTLSEYKALLQADHVDPAVLMALEQDSRIGAGKLLAAYQRRQDHQAAEAVALRYRSRYE RKLWTMYSHVAGLDEVGRGPLAGPVVTAAVILPHQFKWPVNDSKQLTAHERDVLYPHILT EAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVDAMHVPVNLPQERLIK GDANSISIAAASIVAKVIRDRLMVMYDQVYPGYDFKDNMGYGTKAHLAGLAAHGVTPIHR RSFGPVRHCLKS >gi|225002518|gb|ACIZ01000061.1| GENE 3 1603 - 2418 785 271 aa, chain + ## HITS:1 COG:TM0250 KEGG:ns NR:ns ## COG: TM0250 COG0758 # Protein_GI_number: 15643022 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Thermotoga maritima # 62 269 65 271 337 178 45.0 9e-45 MTLRDFLLAWHLATHQNPRLAVSLQQAILEKADLSTYQNDLKQKLTPAVARILSAARETP YLTFVDTAYPPRLREIPQPPSVLFYQGNLGLINQLTLGVVGSRKATNYSAEALTRLFPQL PPMTIVSGLAAGADSMAHEAALAAGLPTIAVIANGIDQVYPAKNRSLQRQISRVGLVVSE YPPGTAPQRFQFVARNRIIAGLAHGVMVTEAEIKSGSLITANYALQHNREVFALPNRFGD VLGAGTNALIQAGAAIVTGPETLVENLHFYP >gi|225002518|gb|ACIZ01000061.1| GENE 4 2663 - 4747 1521 694 aa, chain + ## HITS:1 COG:SPy1164_1 KEGG:ns NR:ns ## COG: SPy1164_1 COG0550 # Protein_GI_number: 15675140 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Streptococcus pyogenes M1 GAS # 6 575 28 589 589 741 67.0 0 MADKKLVIVESPAKAKTIEKYLGRTYKVVASLGHIRDLPKSQMGVDVENNYEPKYISIRG KGDVIKSLKKDAKKASRVYLAADPDREGEAIAWHVSHILGLDPNAKNRVVFNEITKDAVK NAFKTPRGIDMDLVDAQQARRILDRLVGYSISPLLWKKVKKGLSAGRVQSVALKLIIDRE NEIKNFIPEEYWSLDAEFQKGRSKKFSASFYGIKNKKMALKNNEAVQKVLSQIDKAKPFS VTNVVKKERKRFPAPPFTTSTLQQEANRKLGFRTRKTMMLAQQLYEGINLGGKLGTVGLI TYMRTDSTRVSNVAKTETSHYLHEKYGEAYAAVKIRQGKLQEGAQDAHEAIRPTSTLRTP ESLASVLDKDQMKLYRLIWSRFVASEMTPAIIDTVAVTLNQNDVTFRANGSQMKFEGFTK LYVSSRDSGEKDNVLPPLAVGDAVKMLKTDPAQHFTQPPARYSEANLVKALEENGVGRPS TYAPTIETIQKRYYVKLNARRFEPTELGEIVNSLIVEFFPDIVNIKFTANVESELDSIET GEANWVKVIDQFYKPFEKEVAHAETGIEKIQIKDEPAGFNCDICGAPMVIKMGRYGKFYA CSRFPDCRNTKAIVKEIGVICPKCHKGQVVERKSKRNRVFYGCSRYPDCDFVSWDKPVGR DCPVCGHFLVEKKSKAGTQVVCPNNDYKEALQKA >gi|225002518|gb|ACIZ01000061.1| GENE 5 4917 - 6236 1050 439 aa, chain + ## HITS:1 COG:lin1315 KEGG:ns NR:ns ## COG: lin1315 COG1206 # Protein_GI_number: 16800383 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Listeria innocua # 3 433 4 434 434 597 68.0 1e-170 MPTVNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTGNFAELVCTNSLRANQI TNAVGLLKEEMWRLHSIIMQSADATAVPAGGALAVDREPFSELVTRQLTNHPRIHVIHDV LTDFPAGITVVATGPLTAPGLADAIVALNGEAGLSFFDAAAPIIDASTIDNDIVYKKSRY DRGEAAYLNCPMNKEEFQAFYKALVTAEVAEGHDFEKMTVFEGCMPIEVMAKRGIKTMLF GPLKPVGLEDPKTGKTPYAVVQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLEHA QIVRYGVMHRNTFMKSPVVLEPTYASKRRADLFFAGQMTGVEGYVESAASGLIAGTNAAR LALGQTPIAFPQTTAMGAMAHYITHTSPSHFQPMNANFGIMPPLAIKVRNKKERNQQLAE RALNDLATFQTELQSVHQS >gi|225002518|gb|ACIZ01000061.1| GENE 6 6436 - 7332 902 298 aa, chain + ## HITS:1 COG:BS_codV KEGG:ns NR:ns ## COG: BS_codV COG4974 # Protein_GI_number: 16078677 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 7 296 11 299 304 296 49.0 4e-80 MKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFLKANGGFTDFSKVDDLDVQTYLTDL NKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELF KTVEGETPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKGNKDRYVPFG RYAQRALQTYLKDGRQTLMNKHDAQHRFVFVNQYGRPITARGIEYILDQLIKQTSLTANI HPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPKHN >gi|225002518|gb|ACIZ01000061.1| GENE 7 7451 - 7975 558 174 aa, chain + ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 2 174 6 179 179 196 60.0 1e-50 MTTIAAVRKDGVTALAGDGQVTLGEKVIMKGNAQKVRRIYHDQVVIGFAGGVADAFTLQD WFEKKLEHYSGNLRRSAVALAQDWRKDPTLQKLEAMMIVMDEHDLLLVSGSGEVIDPDED VVAIGSGGNFAQAAAIAMLRHSPDMTPADIAKEAVNIAGNIDIFTNHNIIVESF Prediction of potential genes in microbial genomes Time: Wed May 25 19:52:51 2011 Seq name: gi|225002517|gb|ACIZ01000062.1| Lactobacillus rhamnosus LMS2-1 contig00065, whole genome shotgun sequence Length of sequence - 28468 bp Number of predicted genes - 27, with homology - 27 Number of transcription units - 11, operones - 7 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 82 - 585 474 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 2 1 Op 2 . + CDS 407 - 1492 776 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 3 1 Op 3 . + CDS 1532 - 2410 757 ## COG2017 Galactose mutarotase and related enzymes + Term 2452 - 2496 9.7 - Term 2446 - 2477 1.0 4 2 Tu 1 . - CDS 2504 - 3127 478 ## COG0344 Predicted membrane protein - Prom 3188 - 3247 5.7 + Prom 3294 - 3353 4.0 5 3 Op 1 24/0.000 + CDS 3379 - 5391 1805 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 6 3 Op 2 . + CDS 5398 - 7839 2315 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 7842 - 7896 19.1 + Prom 7981 - 8040 6.2 7 4 Op 1 11/0.000 + CDS 8084 - 10345 2191 ## COG1882 Pyruvate-formate lyase + Term 10395 - 10430 4.2 + Prom 10399 - 10458 4.0 8 4 Op 2 . + CDS 10483 - 11334 618 ## COG1180 Pyruvate-formate lyase-activating enzyme + Term 11366 - 11396 -1.0 + Prom 11355 - 11414 6.0 9 5 Op 1 . + CDS 11456 - 12424 947 ## COG0583 Transcriptional regulator 10 5 Op 2 . + CDS 12454 - 13386 714 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase + Term 13415 - 13449 3.1 + Prom 13943 - 14002 3.8 11 6 Tu 1 . + CDS 14214 - 15326 752 ## COG0582 Integrase + Term 15437 - 15486 6.5 - Term 15423 - 15474 6.1 12 7 Op 1 36/0.000 - CDS 15502 - 17487 1377 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 13 7 Op 2 4/0.200 - CDS 17484 - 18254 789 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 14 7 Op 3 40/0.000 - CDS 18348 - 19307 813 ## COG0642 Signal transduction histidine kinase 15 7 Op 4 . - CDS 19300 - 19995 631 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 20060 - 20119 5.1 + Prom 19961 - 20020 4.3 16 8 Tu 1 . + CDS 20093 - 21307 893 ## COG0477 Permeases of the major facilitator superfamily + Term 21326 - 21386 19.6 - Term 21312 - 21374 20.0 17 9 Op 1 8/0.000 - CDS 21387 - 21782 277 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 18 9 Op 2 2/0.600 - CDS 21786 - 22184 212 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 22211 - 22270 4.0 - Term 22219 - 22249 2.7 19 10 Tu 1 . - CDS 22325 - 22960 669 ## COG0778 Nitroreductase 20 11 Op 1 . - CDS 23069 - 23878 595 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 21 11 Op 2 . - CDS 23949 - 25055 746 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 22 11 Op 3 4/0.200 - CDS 25128 - 25460 331 ## COG0140 Phosphoribosyl-ATP pyrophosphohydrolase 23 11 Op 4 24/0.000 - CDS 25457 - 25789 143 ## COG0139 Phosphoribosyl-AMP cyclohydrolase 24 11 Op 5 23/0.000 - CDS 25786 - 26544 664 ## COG0107 Imidazoleglycerol-phosphate synthase 25 11 Op 6 25/0.000 - CDS 26513 - 27262 603 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase 26 11 Op 7 18/0.000 - CDS 27240 - 27866 475 ## COG0118 Glutamine amidotransferase 27 11 Op 8 . - CDS 27863 - 28450 595 ## COG0131 Imidazoleglycerol-phosphate dehydratase Predicted protein(s) >gi|225002517|gb|ACIZ01000062.1| GENE 1 82 - 585 474 167 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 6 145 9 148 466 187 65 1e-131 MVEVQTPKQIVEKLDQYVIGQDEAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPT GVGKTEIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFKKV RVRAEKEANKRLVKILVPAIRKEKNKQSHGGNDEHVARHAKWQDARG >gi|225002517|gb|ACIZ01000062.1| GENE 2 407 - 1492 776 361 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 33 361 143 466 466 303 48 1e-131 MPWRKKSSLKKSGFARKKKLTSGWLKFWYRLFAKKKISNPMAEMMSMLQGMQNGKMPAGD DADAGGEVTDDIRNRRLSVAEQLEKGLLEDREITVAVNDEKKGGGMSDMYGQMGIDLSDT IGALMPKKKVERTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIA AGDKHTSGEVSREGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAEL QGRFPIRVELKDLTEQDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVERIAEIATQ VNHDTDNIGARRLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYI L >gi|225002517|gb|ACIZ01000062.1| GENE 3 1532 - 2410 757 292 aa, chain + ## HITS:1 COG:lin1322 KEGG:ns NR:ns ## COG: lin1322 COG2017 # Protein_GI_number: 16800390 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 1 291 1 289 290 226 40.0 4e-59 MVTIANDFLTVNISRHGAELTSIKDNLTGRERLWQADPEVWPRHAPVLFPIVGALADQQY QYAGKTYHMGQHGFARDRDFTVVSATPFKASLVLKDDDKTRAMFPFAFRLIITYALENNN LHVTYHVDNPAKTEPLYFSIGGHPGFNVPMTPDTEFADYYMNFKPRKSLVQIPLVAGQGI DYSHRTLAATDANLALTHETFKNDALIFAPLGKTTFNLLSDETKHGVSVTMEDAPYLGVW SPYPKTGDFVCIEPWWGIADTIGTTGDLTKKLGINRLEPGTAFEKGYTISIF >gi|225002517|gb|ACIZ01000062.1| GENE 4 2504 - 3127 478 207 aa, chain - ## HITS:1 COG:SPy0908 KEGG:ns NR:ns ## COG: SPy0908 COG0344 # Protein_GI_number: 15674929 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 198 1 206 213 139 42.0 4e-33 MVLVLCFILAYFIGAIPFGVVVGKLFYHTDIRQGGSHNIGTTNAYRMLGPVGGTLVLLLD ILKGTLSASLPILFGIDHHWLILVVGLAAVLGHTFSIYIGFKGGKAVATSAGILLAYNPP FFFIAFAIWFSLILLTSMVSVASTLGMVIITCWSLVYHDWLLTTVACGLLVVFFIKHRAN FKRIKAGDENMVPFGLGLYLRNQHHHD >gi|225002517|gb|ACIZ01000062.1| GENE 5 3379 - 5391 1805 670 aa, chain + ## HITS:1 COG:lin1325 KEGG:ns NR:ns ## COG: lin1325 COG0187 # Protein_GI_number: 16800393 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 8 645 6 643 655 892 68.0 0 MDKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDE INVTIHADNSVTVQDHGRGMPTGMHPSGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG SSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGGLQKLGKVNEPNGTTITFKPDPTVFQ TTVFNYDTLAERLRESAFLLKAITINLTDERTGKHDQYHYPDGLVSFVKYLNEGKDALSQ VINFEGKKDGIVVDFAGQYNDGYSENIISFVNNVRTGDGGTHEIGLRSGMTRAFNEFARK VGLLKDRDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIVYDHL ATFLMENGEESQELVRKAIKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQTKNP KRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMIYTIG AGVGADFDIQQANYNKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDAGRVYIALPPLYR LQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMNPETRTLI RVRIDDAQLAERRVTTLMGDRVEPRREWIEHHVKFDLDDEGSILETPTANHEKLQFGAKQ IVKQLDKKRK >gi|225002517|gb|ACIZ01000062.1| GENE 6 5398 - 7839 2315 813 aa, chain + ## HITS:1 COG:lin1326 KEGG:ns NR:ns ## COG: lin1326 COG0188 # Protein_GI_number: 16800394 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Listeria innocua # 4 803 7 802 818 868 56.0 0 MANQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGF RKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYT EARLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIP PHNLREVVNAILYLLKHPQADLADLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVR SRTHIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSVV IELKKEADAHGILNYLFKNTDLQITYNFNMVAIADMQPKLLGLKAMLEAYVAHRRDVVTR RTRYELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQFDFSEAQAEAI VSLQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQPASRDRVIEKELKRIAKEYGDDRR SSIQAEIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPEDNGLKPNDLAIFT GELSTLQHLYIVTNAGNIIYRPVYEISDARWKDTGEHLSQTVGLGTDEKVLAVFAFDQLD LAGTFVLGSSDGYIKQTALSDLQPQRTYKRKPMMAMKLKTPGAVVTNAYFTTDQAQDVFV VSRHAYGLDFPLAEVSTVGARATGVKSMDLKPEDEVVNFILVKQPEKAVVGILTQRGAFK RMALSEVGQMSRARRGLLVLRELKRDPHRIVAMMQVDDNTRLDVLTDADKVITLTPVNHP TGDRYSNGSFVIDTDVQGKPVFVRTREETPVEP >gi|225002517|gb|ACIZ01000062.1| GENE 7 8084 - 10345 2191 753 aa, chain + ## HITS:1 COG:lin1443 KEGG:ns NR:ns ## COG: lin1443 COG1882 # Protein_GI_number: 16800511 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Listeria innocua # 13 753 5 743 743 956 61.0 0 MKQLDETKVPNYWEGFNGGDWQEEINVRDFIEHNLNQYDGDESFLAGPTEATTVLNNQVL NLKKQERANGGVLDADNNIPSTITSHGPGYLNKDLEKIVGVQTDKPFKRAFMPFGGIRMA EDALKSYGFETDANEHKIFTEYRKTHNQGVFDAYTPEMRKARHYKIVTGLPDAYGRGRIV SDFPRIAIYGIDRLMAEKFNDYNLTGDGEMTDDVIKLREEINEQYRALNDMKKMAKEYGY DISRPAANAQEAVQWIYFGYLAAVKTQNGAAMSVGRIDTVIDAYIQRDMRLGKLNEEQAQ ELIDHLVMKLRMVRFIRTEEYNSLFSGDPIWATLSLAGMGNDGRHHVTKTAFRFLKTLDN MGAAPEPNITLLWSERLPEGFKRYATEVSIQSSTIQYENDDLMRNEWGTDYYGIACCVSA QPIADGVQYFGARANLAKTVLYAINGGKDEIQEAQVGPEYEPITSDYIDYDEFMKKFDKM MDWLADVYVNALNVIHYMHDKYYYEAAQLALKDTRLNRTFATGISGLSHAVDSISAIKYG HVKAIRDENGVAIDFVADNDDYPRYGNNDDRADNIAKWLVKTFYNKMNTHHLYRGAKLST SVLTITSNVVYGKNTGTTPNGRQKGEPFSPGANPAYGAEKNGALASLMSTAKIPYHYATD GISNTFGVTPNTLGHDDETRKDTLVHMVDGYMENSGMHLNINVFNKETLIDAQKHPEEYP TLTVRVSGYCVYFADLTKEQQDDVIARTFFDEM >gi|225002517|gb|ACIZ01000062.1| GENE 8 10483 - 11334 618 283 aa, chain + ## HITS:1 COG:SP1976 KEGG:ns NR:ns ## COG: SP1976 COG1180 # Protein_GI_number: 15901799 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Streptococcus pneumoniae TIGR4 # 23 272 9 258 264 297 57.0 2e-80 MKLIDQSQSPLNILEQVGQDHEGPIKGYVHSVESFGSVDGPGIRFVVFMQGCRMRCQYCH NPDTWNIGVGEEMTADQILADAQRYKAFWGEQGGITCSGGESLVQIDFILELFTKAKELG ISTCLDTSGGPFTRDQPWFGQFEKLMAVTDISLVDIKHIDSAEHKKLTGFPNENILDMVQ YMSDHGDDMWIRHVLVPERTDFDPYLKRLGDYIATLDKRVVQKVEILPYHTLGVKKYHEL GITYPLEGIEPPSADRVKNAENLLHVEDYTGWQSWRPQPANKQ >gi|225002517|gb|ACIZ01000062.1| GENE 9 11456 - 12424 947 322 aa, chain + ## HITS:1 COG:BS_ywbI KEGG:ns NR:ns ## COG: BS_ywbI COG0583 # Protein_GI_number: 16080882 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 12 287 4 275 301 95 24.0 2e-19 MKTKQERIFSSKTLTYFLQLAETMNYTQSAQLLGITQPALTQQIKKLERTVGAPLFYSVG KKLHLSDAGRTMLKATHEIYEILNQTTDEIQQSTSATVGKINIGLLSSIEDSAFNAFIAH YYDLNPEVEITLRMMTRHEIWEALENNQIDLAIMNLPDETIKNWKPYASKKILDEQLLFL HHDNSLANRKRLHFKDTLAEPWVTYPDDYFLGQLLHEAYKNQMVDFPHVVAHFTTPYQLT QFVNHTGVNTALPTSFVAAHADQIKAHAVAFEPAIRFETSFVYRKEKADIPRIANFFKTF DAHLSEKDYLSRVSENSGKIER >gi|225002517|gb|ACIZ01000062.1| GENE 10 12454 - 13386 714 310 aa, chain + ## HITS:1 COG:SP1534 KEGG:ns NR:ns ## COG: SP1534 COG1227 # Protein_GI_number: 15901378 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 4 308 5 309 311 330 56.0 1e-90 MTTLIFGHQNPDTDAITSAMSWAEFQKQAGNTDVEAVALGEPNDETKFVLDHFKVAAPRV IKTAANETGHVMLVDHNEFQQSVADIEDVQIDSVVDHHRIANFHTASPLYYRAEPVGSTN TVIFELFQEHGYEISPTLAGLMASGLISDTLLLKSPTATDKDKKILPEMAKIAGIDLQSY GLAMLKAGTNLAAKSDMDIIEGDAKSFTMGGKSIRIGQVNTVDLDDIYARQDELVAAMTK EAQAKGYDDFLLIATDILNSNSTGFAVGADRDKVAAAFNEKFDANDRLALPGVVSRKKQV VPPMQGAFEG >gi|225002517|gb|ACIZ01000062.1| GENE 11 14214 - 15326 752 370 aa, chain + ## HITS:1 COG:SPy1196 KEGG:ns NR:ns ## COG: SPy1196 COG0582 # Protein_GI_number: 15675163 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pyogenes M1 GAS # 17 352 17 353 356 235 40.0 1e-61 MSTQNYPKLIQAMLPSLPDYIQDYYHSQKAIPIADSTLYQYLHFYQEFLHWLISSRVTDA ISPQNVPLETLERLSLRDAQAFVAYLLERPSKTHPNKRMTRRSVALRLVGIKALYRFLTE ESEPNADGEPYFYRNVWNKVKLKTHAETTTYRNHKLQEMLFVDGEDARFLQWLDQQYAQQ LPSKPRAYFEATKERNLAIIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDRV NFADWIDPYLTAYLKSRTAMIGQQKPTSPLFVTQIGQMVNRIRQNTIEAFFKRYTTAYGR PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKAALREVSETAA KALDQHPQQP >gi|225002517|gb|ACIZ01000062.1| GENE 12 15502 - 17487 1377 661 aa, chain - ## HITS:1 COG:L190126 KEGG:ns NR:ns ## COG: L190126 COG0577 # Protein_GI_number: 15673731 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 5 654 4 667 667 277 30.0 6e-74 MKFYFKLAATNLKADRRLFVPFVITTSFLMAINLIMLNAYTSSDVLFRQFGQAAGKSLFS FGSMTTAIISVILIIYANNFLRKQRIRQLGLYNIIGFGKRELSKMMATEKLLLLLTTLLC GGILGTVLSRLSYLTLAKMLHVNHNLDFGLSQTAFSIAGLITIGLFIVLMLVDEFWLLRK HPIELVREQNAGEREPKTKWLTLIVSIASLAAGYTIAVTVKNPLQAMSLFFFAVVLVIVG TYGLFTSGSVFVLKWLRHRKNYYYKPKHFINVSNLLYRMQQNGAGLASIAILVTMTLITL ATTATLFFGIHEIVNSQTPVDLAYSINPKRPDAANQLRTLAKTHHVKIHSMRTFNGPSST LALLEKNKLDSQANFNGPFSFNNARSVQLMTVENYNRYTGKHVTLNNHEVLIYASNHYEP ATLRIGKQTYHVAKQVTSFPNAPKTFIPNLFVALPSDVQLLTALHALYPKRSMALLKADV TTNQDVTLSGSHANQVKLYHAVVKRGIALPESVQSRAANYDDTASMMSSFLFLGVVFGVT FILATLLILYYKQLAEGYADARRYTILQRVGLSLREVRATINSQLLTLFYLPLIVAAIHV GFALPFVQRIMMLFGLPDWQFFLTVSLITLAIFAVIYVLMYRLTGNVYYRIVSRRQPSSR G >gi|225002517|gb|ACIZ01000062.1| GENE 13 17484 - 18254 789 256 aa, chain - ## HITS:1 COG:L192122 KEGG:ns NR:ns ## COG: L192122 COG1136 # Protein_GI_number: 15673732 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 4 249 2 247 259 277 57.0 1e-74 MSTLLKLKNVEKTYTSRGAQPVQALVNISFSVESGEFVAIMGESGSGKSTLLNLIATLDD PTGGEISLNGQDLRKVKEGARAKFRREHLGFIFQDFDLLDTFNVQDNIFLPLVLAKKPLE IMKNRLTQLAPRLGITDLLKKYPYELSGGQQQRVAAARAMITDPEILLADEPTGALDSRT SSELLDLLTDVNADSKQTILMVTHSAVAASHSQRVLFIRDGQIFHQLYRGELQQPEFLTR ISETMTAMLTKEGEAQ >gi|225002517|gb|ACIZ01000062.1| GENE 14 18348 - 19307 813 319 aa, chain - ## HITS:1 COG:L0132 KEGG:ns NR:ns ## COG: L0132 COG0642 # Protein_GI_number: 15673728 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 16 309 17 288 291 171 33.0 1e-42 MIKAFLRARWMVWLSLLILLVASLLANWLINASLEVALNSWFFALIPLLVIGGCDFWRFR REWSQLQGDVTLLAADQISDPLGQVYFQKIQMLQQTLRQNHDTYRDQEQETVDTLQLWTH QIKTPLTALDLLLQVEPVNASDARLEVGKINRYLTVMLNYLKLTTLNTDLVLTELPLKPL VNETVRDLAKLFIAKDLTVTVETLPTVVSDSQWLRFIFEQLLTNAIKYTPHGSIRIYAKG DAVLVADTGIGILPEDLPRIFEQGYSGYNGRANQKASGLGLFLSRQIAQKLGLTLTVTSK VGVGSTFAIHFPQTRWLAE >gi|225002517|gb|ACIZ01000062.1| GENE 15 19300 - 19995 631 231 aa, chain - ## HITS:1 COG:SP1633 KEGG:ns NR:ns ## COG: SP1633 COG0745 # Protein_GI_number: 15901469 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pneumoniae TIGR4 # 3 223 2 222 225 199 46.0 2e-51 MPQKIFIVEDDDVIAKTIGNYLNRWAFTVELVQKFDQVDAEIRAAAPDLVIMDISLPYFN GFHWLSELRKHSKVPVIFLTSSGDDMNLVMAMNLGADDFLAKPIELPVLLAKIQGMLRRT YQYQQTDTNLSHGEFTLVPTDNQLRSPTQVIDLTPTETKLLSLLFGADGEVVTREAMIEK LWEGDEFIDRNALAVNMNRLRKKVAPVGLNQLIETVKGKGYRLANKEGGHD >gi|225002517|gb|ACIZ01000062.1| GENE 16 20093 - 21307 893 404 aa, chain + ## HITS:1 COG:all2673 KEGG:ns NR:ns ## COG: all2673 COG0477 # Protein_GI_number: 17230165 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Nostoc sp. PCC 7120 # 1 371 1 366 437 104 27.0 3e-22 MRQAKIGWQGQTAAFLLSQNLFVFGTSTVFFAVLWDIALKTSSGAWMTYVSLATALPAIL ISLSAGVLADRYNRKWLIVISAVGVTVLTLAVAYVFAFVTQELWLLLVIAVIRSFGNGLE NPAANALLPQLVPEKQLTQVNGYNQMLMAAMLVISPLLAGYTLSDLGIFWIFVIDALTAV LAVLCLGIVHVPTPVTNPDQATKQKNGIVAGLRYVGHTPVLLAFMFFTGLAFILIAPSSQ LSTLYVNRTFGSEVWHLTFNEWSWTIGAGLGGLFIARHKKFRDQLGLIALGFAGSGIAFA EMGLPQPFMTYLLFMLVSGIFYPLIQAGQTIYLQENVPADKLGRVFSLWAILSTGIYPLA MLGYGPLADRVPIGWIFIVTGLLLIVVAYGFWRRLKHLNGSSNK >gi|225002517|gb|ACIZ01000062.1| GENE 17 21387 - 21782 277 131 aa, chain - ## HITS:1 COG:mlr4407 KEGG:ns NR:ns ## COG: mlr4407 COG0454 # Protein_GI_number: 13473716 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Mesorhizobium loti # 13 130 42 164 165 87 39.0 4e-18 MLHIENNQPISASQFIAVLDASGIHRPTEDRARMQRMLNNANVLLTAWDDHQLIGVLRGV SDKSYCTFVSELAVIKSHQHQGVGKALLQTLHTIQGPNISIMLLSAPAAMQFYPKVDFKP VPTAFKVQRQF >gi|225002517|gb|ACIZ01000062.1| GENE 18 21786 - 22184 212 132 aa, chain - ## HITS:1 COG:PM1553 KEGG:ns NR:ns ## COG: PM1553 COG0454 # Protein_GI_number: 15603418 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Pasteurella multocida # 4 117 3 118 130 86 37.0 1e-17 MSYTIKVNAPLTVQQVHDLYQQTHFDKPIADAARLQVMIDETQLVLSVWDDEHLIGFARC LTDFEYCCYLSDILILPAYEGHQIGRQLIATLQAYIGPRVTLSLRAADSAVGFYERINLP HADNMFRIGREG >gi|225002517|gb|ACIZ01000062.1| GENE 19 22325 - 22960 669 211 aa, chain - ## HITS:1 COG:lin0151 KEGG:ns NR:ns ## COG: lin0151 COG0778 # Protein_GI_number: 16799228 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 4 210 5 209 210 138 33.0 9e-33 MLENNNFDEVVMKRHTAREFDPEITISKGELLQIITYATKAPSALNMQPTRFVVAQNNAA KEKIASVAGTNAPEILSASAVVLVGGELDLGPFEDDLFKRAATAGLLTDRAVEHQKPMID HLLADFKQDKQALREFIIQNSSLAAMSLMLAARAYGYETGPMTGFDHEKILPALDLDPAH FMPTLLIAIGKPKNAPDSLYRIPASKVTVFK >gi|225002517|gb|ACIZ01000062.1| GENE 20 23069 - 23878 595 269 aa, chain - ## HITS:1 COG:mll4780 KEGG:ns NR:ns ## COG: mll4780 COG0179 # Protein_GI_number: 13474005 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Mesorhizobium loti # 44 258 57 271 281 164 40.0 1e-40 MKIAKLNNHPYLITSASTAQPITNAADVLTALTHRDTLTFGSEINFKPEQLEAPVAASSQ IFAIGMNFLDHSQEIHIKLPEVPSVFTKFSSSLAGPTSTIPIRGPKTDWETELVVLIGKG GRNITEADALKHVAGFLVGEDFSDRAVQFANAEPQFSLAKSFQNYSPIGPWVTSTDAITN LDQLQITTTVNGHIMQQAKLDQLIFKVPALIHYLAGIVALQPGDLIFTGTPSGTGVGRDP QIFLQPGDHVTAAISQLGALNLTMATTQN >gi|225002517|gb|ACIZ01000062.1| GENE 21 23949 - 25055 746 368 aa, chain - ## HITS:1 COG:BH1665 KEGG:ns NR:ns ## COG: BH1665 COG0079 # Protein_GI_number: 15614228 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Bacillus halodurans # 3 347 4 348 369 283 42.0 4e-76 MFKPTIHQLHPYTPEKPLAVLKEELGLPQLVRLSANENPFGTSVKVQQAVTNWNFTQSRD YPDGYASQLRTAVAKHLDVAAEQLVFGNGLDEVIALIARTFLSPGDEVIEPWPTFSEYRL HAQIEGATVIDVPVSEAGNFDLPAMAQALTAKTKLIWVCNPNNPTGTLLSIATLTEWLRQ IPKDVLVLMDEAYIEFTDDYPATSAISLLSKFPNLVVLRTFSKIYGLANFRVGFGVFPKQ LVNYLQTVRLPYNLSSIAQVSAQAALADQDFVTMTRKRVQQARDSWERFLTQTGLPHTRS QTNFQFFQAPKMQASALKKRLLQQGFLVRDGLKPGWLRVTFGTEAQNTAVQRIIETFQAE LTGPNALK >gi|225002517|gb|ACIZ01000062.1| GENE 22 25128 - 25460 331 110 aa, chain - ## HITS:1 COG:lin0570 KEGG:ns NR:ns ## COG: lin0570 COG0140 # Protein_GI_number: 16799645 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-ATP pyrophosphohydrolase # Organism: Listeria innocua # 8 108 2 101 103 103 58.0 5e-23 MTAAKQSITELYDLIQSRKSQPVSGSYTDYLFTKGLDKILKKVGEESTEVIVAAKNPDDA AFILEVADLTYHVLVLMVERGISLDQIATELASREGKMSRLKERDKINKY >gi|225002517|gb|ACIZ01000062.1| GENE 23 25457 - 25789 143 110 aa, chain - ## HITS:1 COG:BS_hisI_1 KEGG:ns NR:ns ## COG: BS_hisI_1 COG0139 # Protein_GI_number: 16080539 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-AMP cyclohydrolase # Organism: Bacillus subtilis # 11 108 13 110 115 134 63.0 5e-32 MIPLDFKKASGLITTVVQDATTKQVLMVAYMNAESLEKTMTTGETWFWSRSRNMLWHKGE TSGNTQTVQAIAVDCDADTLLITVNPAGPACHTGHTSCFYRQYTERKGTQ >gi|225002517|gb|ACIZ01000062.1| GENE 24 25786 - 26544 664 252 aa, chain - ## HITS:1 COG:lin0572 KEGG:ns NR:ns ## COG: lin0572 COG0107 # Protein_GI_number: 16799647 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate synthase # Organism: Listeria innocua # 1 252 1 250 251 294 61.0 1e-79 MLTKRIIPCLDVDQGRVKKGVHFIQLKDVGDPVAIAKAYEAQGADELVFLDITATTDARQ TMTQTVAAVATQVFMPLTVGGGIRSVTDMHQLLRAGADKIALNSAAVKHPDLITAGAEKF GRQAIVVAIDARWQPSRNRYQVMINGGRTPVDLGVLTWAQQAVAAGAGELLITSMDADGT KQGFDLRLYQQLSSIVSVPVVASGGAGSANDFVTLFRDTNVSAGLAASIFHFGELTIPQV KTVLKQAKVAIR >gi|225002517|gb|ACIZ01000062.1| GENE 25 26513 - 27262 603 249 aa, chain - ## HITS:1 COG:lin0573 KEGG:ns NR:ns ## COG: lin0573 COG0106 # Protein_GI_number: 16799648 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Listeria innocua # 1 239 1 238 240 196 44.0 4e-50 MQLYPAIDLLAGQSVRLTQGDYRQVSLTADPLIQVKNLTAAGLKHLHLVDLDGARSQQPV NQAVISTIRQHTPAFIELGGGIRTLTIMDHYLNAGIDRLILGSVAVTTPELVTQAVQKFG ADKIAVGIDARAGKVATDGWLTTSTQSPTHLIQAMVRRGVTTFIVTDIGRDGMMKGPNVA LLAMLHQTVPNVNIVASGGVHTLADLTALQTAGIQAAVIGKAWQTGSFPLNKLKELEDND ADKTHYSMP >gi|225002517|gb|ACIZ01000062.1| GENE 26 27240 - 27866 475 208 aa, chain - ## HITS:1 COG:lin0574 KEGG:ns NR:ns ## COG: lin0574 COG0118 # Protein_GI_number: 16799649 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Listeria innocua # 1 200 1 200 208 203 49.0 2e-52 MIVIVDYDTGNTLNVKKALDYLAIDNQLSADPAVILAAAGLILPGVGAFKTAMSALTQRD LVPVIRQFAATGKPLLGICLGMQLLFDRSFEFGETAGLGLIPGTVVAIPPRAGFPTPHMG WNTNTITQPDPFAAGFANQATYFVHSYYVQTQPTYTLAITDYGQPLTSIVRRQNILGTQF HPEKSGAVGLAGLQRFKEMTTDATLSSN >gi|225002517|gb|ACIZ01000062.1| GENE 27 27863 - 28450 595 195 aa, chain - ## HITS:1 COG:lin0575 KEGG:ns NR:ns ## COG: lin0575 COG0131 # Protein_GI_number: 16799650 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate dehydratase # Organism: Listeria innocua # 1 194 1 194 194 251 62.0 6e-67 MRTATITRTTKETAITISLNLDQQSGIDIDTGIGFFDHMLDAFAKHGRLGLIVKAQGDLD VDPHHTIEDTGIVLGSCFKQALGDKAGIERFGNAFVPMDESLARVVVDLSGRAYLVFDAE LTNQRLGGFDTEVTEDFFQAMAFAGEFNLHAAVLYGRNTHHKIEALFKALGRSMQAAVAL NPAVKGIPSTKGVIS Prediction of potential genes in microbial genomes Time: Wed May 25 19:53:00 2011 Seq name: gi|225002516|gb|ACIZ01000063.1| Lactobacillus rhamnosus LMS2-1 contig00066, whole genome shotgun sequence Length of sequence - 23805 bp Number of predicted genes - 22, with homology - 21 Number of transcription units - 8, operones - 4 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 18/0.000 - CDS 42 - 1322 1173 ## COG0141 Histidinol dehydrogenase 2 1 Op 2 11/0.000 - CDS 1324 - 1953 476 ## COG0040 ATP phosphoribosyltransferase 3 1 Op 3 . - CDS 1950 - 3098 813 ## COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis - Prom 3178 - 3237 2.0 + Prom 3046 - 3105 1.8 4 2 Tu 1 . + CDS 3254 - 3484 119 ## 5 3 Tu 1 . - CDS 3614 - 4711 753 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase - Prom 4734 - 4793 6.9 6 4 Op 1 . - CDS 4936 - 5496 447 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Term 5509 - 5538 0.3 7 4 Op 2 . - CDS 5545 - 6411 825 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 6439 - 6498 7.3 8 5 Tu 1 . - CDS 6575 - 7525 833 ## LC705_01466 hypothetical protein - Prom 7575 - 7634 2.8 + Prom 7799 - 7858 5.1 9 6 Op 1 . + CDS 7884 - 9587 1545 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP 10 6 Op 2 . + CDS 9601 - 9912 309 ## LGG_01451 pyrophosphatase - Term 9944 - 10011 20.2 11 7 Tu 1 . - CDS 10032 - 11174 1115 ## COG3641 Predicted membrane protein, putative toxin regulator - Prom 11243 - 11302 4.8 - Term 11310 - 11372 6.7 12 8 Op 1 9/0.000 - CDS 11420 - 12058 672 ## COG0461 Orotate phosphoribosyltransferase 13 8 Op 2 5/0.000 - CDS 12051 - 12770 829 ## COG0284 Orotidine-5'-phosphate decarboxylase 14 8 Op 3 . - CDS 12840 - 13640 697 ## COG0167 Dihydroorotate dehydrogenase 15 8 Op 4 24/0.000 - CDS 13692 - 16874 2578 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 16 8 Op 5 7/0.000 - CDS 16877 - 17959 903 ## COG0505 Carbamoylphosphate synthase small subunit 17 8 Op 6 15/0.000 - CDS 17956 - 19230 1166 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 18 8 Op 7 6/0.000 - CDS 19234 - 20175 897 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 19 8 Op 8 7/0.000 - CDS 20162 - 21469 1033 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 20 8 Op 9 4/0.000 - CDS 21473 - 22021 641 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase - Prom 22096 - 22155 3.0 - Term 22190 - 22232 -1.0 21 8 Op 10 15/0.000 - CDS 22256 - 23176 384 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 22 8 Op 11 . - CDS 23173 - 23640 364 ## COG0597 Lipoprotein signal peptidase - Prom 23677 - 23736 1.6 Predicted protein(s) >gi|225002516|gb|ACIZ01000063.1| GENE 1 42 - 1322 1173 426 aa, chain - ## HITS:1 COG:lin0576 KEGG:ns NR:ns ## COG: lin0576 COG0141 # Protein_GI_number: 16799651 # Func_class: E Amino acid transport and metabolism # Function: Histidinol dehydrogenase # Organism: Listeria innocua # 1 425 1 424 427 447 56.0 1e-125 MKILTGTLTELQQQVTTRQQTVAQNPAVQTTVQKILADVKLNGDKALLAYSANFDHVTIS DLRVPQAQIDAAMADLSPKLLAALTLAQKNITSFHQLEMSQGFIDSPYPGVIRGQKLTPL AAVGLYVPGGTAAYPSTILMTAIPAKLAGVKKIVMVTPPQAKGLNPAVLAAAKLAGVDEI YQIGGAQAIGALTYGTESIPKVDKILGPGNRYVAEAKKQVFGDVAIDMIAGPSEIGIIAD DSADPVRVAADLLSQAEHDPNARAMLVTTSPALADAVSKAVDSQLLSLPRKAIAQAAITN QGFIAIVPDVASAFCLMNTIAPEHLEIQLPNPITYLNEIHNAGSVFLGENAAEPVGDYVA GPNHVLPTAGSARFFSPLGVYDFVKRTQFIQYSAAALATQADAIVTLAQTEGLDGHAEAI LKRIKR >gi|225002516|gb|ACIZ01000063.1| GENE 2 1324 - 1953 476 209 aa, chain - ## HITS:1 COG:lin0577 KEGG:ns NR:ns ## COG: lin0577 COG0040 # Protein_GI_number: 16799652 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase # Organism: Listeria innocua # 3 208 4 210 213 229 54.0 4e-60 MTLTIALAKGRTTTQVLPLLTAAGIDCQALSNKSRRLIFTENPDYHFILVKAADVLTYLN RGTVDIGIVGSDVLEEQGHQQFDMLDLKTGRCRFILASTPDFDPQKTKRKLIATKYPHLA QRYFQSQGEDVEIIKIEGSVELAPLTGMADAIVDITETGTTLRENNLKIFATLTPVSTHL VVNRLALKQKKPAIYQLIQSLQQVRPQEA >gi|225002516|gb|ACIZ01000063.1| GENE 3 1950 - 3098 813 382 aa, chain - ## HITS:1 COG:lin0578 KEGG:ns NR:ns ## COG: lin0578 COG3705 # Protein_GI_number: 16799653 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase involved in histidine biosynthesis # Organism: Listeria innocua # 3 382 4 384 392 193 30.0 4e-49 MSNRHLPVGTRDEFGPRAIRKENLIQMMSHRFIASGYERVKTPLLEYRDVFQPLTVRGEQ PYQMLDDAGEAVVMRPDLTLPLARLLSTTSIQPPVQWWYVGDVFRVRKSLSGTYNQMTQA GIELIGYASIKAEWACLSEATRICEDLGLTDLTLELSDAQFVSQVMQALPLDPATASALQ AAFFKKNLSTYQQLIAPLRAEPLYPFLQQWPWLFGEAATIFTQLAQLLPPTLLHSRLKPL QQTVAFLQHQFPQVTITVDLTSQPPQSYYTGLFFHAYASDSRQYLFSGGRYDQLLASFQQ DLLPAVGLAFDVDALTDILPDDPKPALTLVYGRPSQWQEAAAVVATTPHAQLCLVDSLAE AKTMAQKYHAKLIDLSPKEAMQ >gi|225002516|gb|ACIZ01000063.1| GENE 4 3254 - 3484 119 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSGPYDPNLIYQSHVGLRELLLAAVITQRVRDSLLGSAIKFLDVCSVGQSRVLSNRRSLW IGANLLGLITTSWLLI >gi|225002516|gb|ACIZ01000063.1| GENE 5 3614 - 4711 753 365 aa, chain - ## HITS:1 COG:BH1665 KEGG:ns NR:ns ## COG: BH1665 COG0079 # Protein_GI_number: 15614228 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Bacillus halodurans # 2 345 3 348 369 243 37.0 5e-64 MLRNSIAGLPDYVSDSTPERIAKAAGLAKMTRLSFNENPVGTSPKVQAALEKWAFSQARN YPDPDALPLRTAVAKRLGVPAEQLLFSSGLDEMIALICRTFLEVGDESLQPWPTYPEYQL QAAIAGATTINAPVIAATGEIDLDALLAHITTKTKVIWVCNPNNPTGTYLPPDQITQFMK QVPPNILVVVDEAYIDFVDQPEPSTLSLTHQFPNLLVMRTFSKLYGLANFRVGFSIVPKA LIPKMQNVRLPYNISGMSQAAALAAWEDQTFTRKVKQQIFATRKQWDQFFDQHQIRHYAT QTNFMLYQVNDPQALGTFLKQHGYLVRDSMVPGWIRQSFGTPKQDAEVQQLLLTFLGIKQ TSNIS >gi|225002516|gb|ACIZ01000063.1| GENE 6 4936 - 5496 447 186 aa, chain - ## HITS:1 COG:TM1181 KEGG:ns NR:ns ## COG: TM1181 COG0494 # Protein_GI_number: 15643937 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Thermotoga maritima # 19 185 14 175 179 100 33.0 2e-21 MFFDHPLAKGTILSETPHYHGPIFDIVTQKIKTPDGLTVKRDLIRHANAVAMLALTHDNR VLINREYRVATNSEVYALPAGLIDAGEDWQTAASRELREETGYITHDLQWLTAVRSSEGM TDETVHLVLAKLDLAAKTSQDFDPDEFVTSRLVPFSELVAGVKSGKINSAQTVAAVTYYL AFVAKK >gi|225002516|gb|ACIZ01000063.1| GENE 7 5545 - 6411 825 288 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 281 4 280 283 265 47.0 6e-71 MKIAIVTDSTCYLPQTEIDQHHITVVPIPVILDGEVYDEGKDITTQEFYAKLKTAKTFPS TTQPPLGEMLKLYENLANEGYDTIISIHLASTISGFVNTLKGAVDEVHGAKVYVYDSQIT VILMGWLVLAAAQMAEAGKDPQAILARLDDLRATMGEYFIVNDLQNLVRGGRLSNASAFI GGMLKIKPLLTFDDQSHKIVAIEKIRSIKKAYARVETLFQETLAKVDYPVRAVVIHANDP EEAQRWMADLEQKFPNVPFELSYFGPVVGTHLGEKAIALAWMKDFTKA >gi|225002516|gb|ACIZ01000063.1| GENE 8 6575 - 7525 833 316 aa, chain - ## HITS:1 COG:no KEGG:LC705_01466 NR:ns ## KEGG: LC705_01466 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 13 316 1 304 304 342 99.0 9e-93 MKGKRSILLLVTVVLIAAAVLLGVVKYQHVQGEKQQAEKTQVILNNLKQQYGQPQKNDTQ RLQTLKKLKAAEKRYAKQTNASNEVLARYQNYVDRDVKYFQDQNNALLKDNTLTKKALKE ISVTDLQKKLDGIEKLLANLTKQGLVVYNRDVLQTIKQKASKLKRAYQKQIAQKAPEKQS QPAETQTTADNATTSTPATNQTTTSDAATSSTNANTAGAANTYGNNTANTSSSQYTSPYY SGYGYGNWNQTGAATGNTTGTSNTTPATPPTTSNEPGDDTAATSSDTATSGNDSSDTTGT TSSQTSGTAQTGEGSN >gi|225002516|gb|ACIZ01000063.1| GENE 9 7884 - 9587 1545 567 aa, chain + ## HITS:1 COG:SPy1013 KEGG:ns NR:ns ## COG: SPy1013 COG1293 # Protein_GI_number: 15675016 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Streptococcus pyogenes M1 GAS # 1 554 1 540 550 449 46.0 1e-126 MSFDGIFTHAMAQELNTTLSGGRVAKIQQPYENEIIITIRAGRKNHPLLLSANPQYARVQ ITHIPFTNPDVPATFTMTLRKYFNAATLTEIHQVQNDRVLHFEFSTRDELGDELGLRLII EMMGRHSNIFLVSKRTGKIIDLIRHVSADQNRYRPLMPGAPYVEPPKQDKVDPFHDSERI YHELERQVTPSLSRATLLQQHYQGLAKDSASELALRLNQGDAGWDSFFAALATPEPTITT QGKKAVFTAIPYQSLTGEQQHFSTLSAMLDAYYAQKAEHDRVLQQGGNLIHVIKNVIDKD RKKQRKLKRTLEETEKADDYRIRGEILTTYLSQVKRGMTSIELPNFYADNEPIKITLSNQ LTPSRNAQKYFAKYTKLRNAVAHVHQQMQENQEELDYLEGIMAQIDVASPKDLVDIRLEL QQQGYLRKQKSGKKGNKRQKVSKPDQFYASDGTKIWVGKNNLQNDQLTLHTAKKTDIWLH VKDIPGSHVIIDSSDPSEKTLLEAAELAAYFSKARDSANVPVDWIEVKKIRKPNGAKPGF VIYEGQKTVSVTPDADLVAKLRNPPTK >gi|225002516|gb|ACIZ01000063.1| GENE 10 9601 - 9912 309 103 aa, chain + ## HITS:1 COG:no KEGG:LGG_01451 NR:ns ## KEGG: LGG_01451 # Name: not_defined # Def: pyrophosphatase # Organism: L.rhamnosus # Pathway: not_defined # 1 103 1 103 103 178 100.0 5e-44 MSESSAQISRPLQEHIIANKVKHGWNTTDTNFEMLLAYHEMAELTTALLKHDQANIAEEL ADVTIYLLGIAEIKGIDLAQAVNDKVTINDHRVYDAQGHKHLE >gi|225002516|gb|ACIZ01000063.1| GENE 11 10032 - 11174 1115 380 aa, chain - ## HITS:1 COG:SPy0851 KEGG:ns NR:ns ## COG: SPy0851 COG3641 # Protein_GI_number: 15674884 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Streptococcus pyogenes M1 GAS # 37 374 4 347 352 264 49.0 3e-70 MADSANKELTAAAHALAEEEAGKESGLVEDRHAKQKSSKLTVTVFLNKVLSGTALGVIIG LIPNAVLSGILKYLGTNTFAVTLTQIAVIFQLATPLIIGGLIALQFELNPMQMMVTAGAA FVGSGVVKFNPALKAYVGSGTGDLINTMITASIAVLLLIWIKDRFGSTAVVAMPILVGCG TAYIGVLLLPFIAAFTTAIGELINSFTTLQPILMAILICCSFATLIISPISTVAIGLAIQ LNGISAGASAMGVAATAIALVVFSWNVNKSGVTLAIALGAMKLMMPNLFKHPIILLPCLF TAIVSAIPVALLGVSGTPQSAGFGMVGMVGPLASLDAGLAIPLVLLCWFAVPIAAALLSK LLFEKTFKLFDSKVVFKFLG >gi|225002516|gb|ACIZ01000063.1| GENE 12 11420 - 12058 672 212 aa, chain - ## HITS:1 COG:SP0702 KEGG:ns NR:ns ## COG: SP0702 COG0461 # Protein_GI_number: 15900601 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 4 208 3 207 210 230 55.0 1e-60 MTKLENQIASDLLRIKAVTLRPEAPFTWASGLKSPIYTDNRLTIGYPDVRSKIAAGLAQE IVAHYPDVTAIGGVATAGIPHAALVANLLNLPLVYIRSKPKDHGQGRQIEGHLSADAKLV VIDDLLSTGGSVLGAVAAAQKDGVNVLGVAAIFSYQLAAVTANFAKAGLPFFTLTNYTAL IQTAEAQGAITSAQLASLHQWREDPAKWGVQF >gi|225002516|gb|ACIZ01000063.1| GENE 13 12051 - 12770 829 239 aa, chain - ## HITS:1 COG:L181692 KEGG:ns NR:ns ## COG: L181692 COG0284 # Protein_GI_number: 15673327 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Lactococcus lactis # 3 234 6 235 237 219 50.0 3e-57 MTPIIALDFKDQATTLDFLKAFPQTERLFVKIGMELFYAEGPAVIKAIQAAHPVDIFLDL KLHDIPNTVEKAAWQLGRLGVALTTVHAAGGKDMMLAAKRGLLAGAKAAHQPAPKMLAIT HLTSTDQAMLENQLSIDMPISQAVQRLAAIAQASDADGVVASALETPLIRSVTKPDFLVV TPGIRPRGTAVGDQKRVVTPGRAKRLGSSAIVIGRPITQADDPVAAYQSIKKAWETAHD >gi|225002516|gb|ACIZ01000063.1| GENE 14 12840 - 13640 697 266 aa, chain - ## HITS:1 COG:L182555 KEGG:ns NR:ns ## COG: L182555 COG0167 # Protein_GI_number: 15673328 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 1 253 7 259 311 311 60.0 6e-85 MAIQLPGLTMKNPFMPASGTFGFGEGYAKQYDLNLLGALVTKSTTLMPRIGNQGKIYADG PSSTLNAVGLKNPGAEVVLHEKLPWLASHYPDLPIIASIAGADVAEYTAVAKKLSAAPNV KALEVNISCPNVDQGGMAFGTDPSVAAAVTKAVKEASSVPIFVKLTPNVTDITTIAKAVE AAGADGISLINTFVGMRLDIQTGEPILTNVTGGVSGPALFPMALHMVYQVAHTVHIPIIG MGGVSSGHDVAEMLASRCQGSRHRFS >gi|225002516|gb|ACIZ01000063.1| GENE 15 13692 - 16874 2578 1060 aa, chain - ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1053 1 1053 1058 1484 70.0 0 MPKRQDIHKILVIGSGPIIIGQAAEFDYSGTQACLALREEGYEVVLVNSNPATIMTDTEI ADRVYIEPLTVEFVSQILRKELPDAILPTIGGQIGLNLAMKLSNTGILDELGIELLGTKL SAIDQAEDRELFKNLMQKLHEPVPESAIANNVQEAQEFADKIGFPVIIRPAFTMGGTGGG IADNEKELAEIAENGLNLSPVTQVLIERSIAGYKEIEFEVMRDASDSAIVVCNMENFDPV GVHTGDSMVFAPTQTLTDKEVQMLRDSALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN PRVSRSSALASKATGYPIAKMAAKIAVGLNLDEIKNPVTKKTWAEFEPALDYVVTKLPRF PFDKFENGDRTLGTQMKATGEVMAIGRTLEESLLKAVRSLEVGLIHPRRPEFSKLSDDEL SKHIIQANDERLFYLAEAFRRDYTIDEVAELSKMNPFFLDKIKHIVELERELAAHKADLS LLAEVKRYGFADEEIAKLWGLHADQIRQMRKEQHILPVYKMVDTCAGEFASDTPYYYSTY ESSTESTKSDKPSILVIGSGPIRIGQGVEFDYATVHSVKAIQKAGYEAIIMNSNPETVST DFSIADKLYFEPLTLEDVLNVIDLEQPKGVIVQFGGQTAINLAEPLAKRGIKILGTSVAD LNRAEDRDLFDQVIKELKLPQPEGGTATDKDGALAVADKIGYPVLVRPSYVLGGRAMEIV HDADELASYIDRAVSVSHDHPVLIDHYLVGKECEVDCISDGETVVLPGIMEHIERAGIHS GDSMAVYPPQTFSQDIIDQITDATIKLSRALNCIGLMNVQFIIHQGKAYVIEVNPRASRT VPFLSKVTNVKLAQVATLAILGLSLKEQGFTTGLLPNQAGIHVKAPVFSFSKLNHVDSLL GPEMKSTGEVMGSDTTLAKALYKAFEAAGMHLPQFGRALITVKDADKVEATELAKRFREV GYQLVATSGTAKAFEAAGITVATIEKLDSGKETILEDIADRKIQLVINTMTADKKASSDG FRIRETAIEHGVPLMTSLDTADAILKVLESRAFSMTPIRS >gi|225002516|gb|ACIZ01000063.1| GENE 16 16877 - 17959 903 360 aa, chain - ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 2 353 3 355 360 535 70.0 1e-152 MKRYLILEDGSVFPGVGFGAETVTTGEIVFNTGMSGYQETITDQSYNGQIITFTQPLIGN VGINRDDYESIDPTAKGIVVRDVARVTGNWRSQMTLDEFLKRKHIPGISGVDTRALTKKI REVGAMKASIVDAADEHAFDQLKALVLPKNQVQQVSTQQAYPAPGTGRNVVVIDFGLKHS ILRELAKRQCNVTVLPSTTTAATILELAPDGVMLTNGPGDPKDVPEALDMIRGIEGKIPL FGICLGHQLFALANGADTFKMKYGHRGFNHPVREIATGRIDFTSQNHGYAVDPDSIDPDT LLVTHVEINDGTVEGLRHRLYPAFTVQFHPDAAPGPHDADHLFDEFMEMMDAFSDRTQKG >gi|225002516|gb|ACIZ01000063.1| GENE 17 17956 - 19230 1166 424 aa, chain - ## HITS:1 COG:lin1951 KEGG:ns NR:ns ## COG: lin1951 COG0044 # Protein_GI_number: 16801017 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Listeria innocua # 2 421 3 423 426 421 51.0 1e-117 MLIKNAHIVSDTEYTADIQITGEQITAIGQQLTARADETVIDATGATVVPGLIDVHVHFR EPGFTAKETIKTGAQAAAHGGFTTVVAMSNLNPVPDTVATLKPLLAKNRSDAKITVRQFA PITRNLHSDQVVDMPALQAAGALGFSNDGVGVQDADTMYRAMLQAAKLNAPIVAHIEDAS LMHGGVINAGPVAKKLNLPGIINQTESSQLARDLDLAAATGVHYHACHISTRQSVALIRE AKKRGVNVTAEVSPHHLLLDENNIPGDNPMFKMNPPLRSRADHLALLEGLQDGTLDMIAT DHAPHTAEEKTGSFKTAAFGIVGSETAFPLLYTKFVKSKMFTLQQLIAKMSTIPAAKFGL PGGHITVGGPADLTILDLETSYKIDPADWFSKGKNSPFIGEEVQGQALYTISHGQIAYQK GGQA >gi|225002516|gb|ACIZ01000063.1| GENE 18 19234 - 20175 897 313 aa, chain - ## HITS:1 COG:SPy0832 KEGG:ns NR:ns ## COG: SPy0832 COG0540 # Protein_GI_number: 15674868 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pyogenes M1 GAS # 13 309 12 308 311 340 54.0 3e-93 MTLSNLTDTPFKDFVSAEQVDEKSAMALINRAEDFKAGQTVHFPEPIYAANLFFENSTRT HTSFEMAERKLGLTVIPFDPAHSSVSKGETLEDTIKTIGAIGVNIAVMRHAKDGYYKELM GAWPTTAIVNAGDGAGQHPSQMMLDLMTIHEEFGHFEGLNIGIVGDLSHSRVARSDMQML HKLGATLHFAGPQQWYDPSFDRYGDFISVPELVKQVDVLMLLRVQLERFNQDNREAFSKE SYHAKYGITDDLAKTMKPNAIFMHPAPVNRDVELASDLVDGPQSRIFTQMQNGVFMRMAM LEAVINARHFGEE >gi|225002516|gb|ACIZ01000063.1| GENE 19 20162 - 21469 1033 435 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 10 427 5 426 447 402 46 1e-111 MAFHNDEAVLDIGDKPKFGQWVGLSIQHLFAMFGSTVLVPILVGLDPSIALFSSGVGTLV YILITRGKIPAYMGSSFSFITIMQALMKGAGYPAIAQGTVAVGVVYLIVALIVARSGSAW IDRALPPIVVGPIVMVIGLSLAGTAATDATMRTISATKSVYDLRYFAVAMITLASVIIYN MYLKKFISLLPILLGIVTGYVVALLFGIVDLTPVQQAAWFDLPKFELPFISYQPQLYWGA ILSMAPIAFVTMTEHMGHIMVLNKLTKRDFFKDPGLNHTLAGDGTASIIAGFVGGPPVTS YGENIGVLAMTKVHSVYVLGGAGMFAILFAFIGKLSALIRSIPSPVIGGISFLLFGVIAS NGLRVLIDNKVDFDKKRNLMIASTILVIGIGNASLQFAGYQFSGLALATVIGIFLNFVLP EHAANEEGAEKNDLI >gi|225002516|gb|ACIZ01000063.1| GENE 20 21473 - 22021 641 182 aa, chain - ## HITS:1 COG:BH2541 KEGG:ns NR:ns ## COG: BH2541 COG2065 # Protein_GI_number: 15615104 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Bacillus halodurans # 4 179 2 177 180 208 60.0 5e-54 MAQSKQVVDEVTMKRALTRISYEIIEQNKGLNDLVLVGIKTRGIYLAHRIAKRLEQLEGL KVPVGELDIRFYRDDVHKIDHEHQPDVEGAQLPVNITGKHVILVDDVIFTGRTIRAALDA LMDEGRPRKISLAVLVDRGHRELPIRPDFVGKNIPTSLDEQIQVQVAELDGKDGISIEKM GE >gi|225002516|gb|ACIZ01000063.1| GENE 21 22256 - 23176 384 306 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 39 283 41 279 285 152 37 2e-36 MSDTFTITTESGRIDKIITAHETTHTRSQVQKWLQDGLVTVNGNPVKANFKVTAGDVVTV TIPEVKPLKAVAEPIPLEIVYEDDQVIVVNKPQGMVVHPAPGHPDGTLVNGLLYHTKLPG INGVIRPGIVHRIDKDTSGLLMVAKTEAAQLSLSAQLKAKTSIREYLALVHGTFKEDEGT IDAPLGRDPRDRKRQAVVADGRHAVTHFQVLERFTNYTLVKCILDTGRTHQIRVHMAYIH HPVAGDPLYGPKRTLPGHGQFLHAAKLGFVHPVTGKLLTFTAPVPPIFEKTLTDLRAGID KTRNVR >gi|225002516|gb|ACIZ01000063.1| GENE 22 23173 - 23640 364 155 aa, chain - ## HITS:1 COG:L0335 KEGG:ns NR:ns ## COG: L0335 COG0597 # Protein_GI_number: 15672979 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Lactococcus lactis # 2 150 4 148 150 104 40.0 5e-23 MLIYVMVAAVLVLLDFGIKTWVRVHIPLGDSQSLIPGVIDLTHIRNTGAAFSMFEGKQWF FYVTTILAFVVVAMLWRDSLHKPFYRMGLTLITAGAIGNFIDRLRFRYVTDMFHLEFLDQ WRFNAIFNFADVCITLGVVFVLIYILFDRDKAAVA Prediction of potential genes in microbial genomes Time: Wed May 25 19:53:15 2011 Seq name: gi|225002515|gb|ACIZ01000064.1| Lactobacillus rhamnosus LMS2-1 contig00067, whole genome shotgun sequence Length of sequence - 5949 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 5, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 65 - 97 4.0 1 1 Op 1 . - CDS 125 - 1798 1683 ## COG2759 Formyltetrahydrofolate synthetase 2 1 Op 2 . - CDS 1811 - 2167 277 ## LC705_01482 hypothetical protein - Prom 2241 - 2300 3.8 + Prom 2123 - 2182 3.4 3 2 Tu 1 . + CDS 2240 - 2638 309 ## COG0328 Ribonuclease HI + Term 2684 - 2731 9.1 - Term 2671 - 2717 9.1 4 3 Tu 1 . - CDS 2755 - 3357 719 ## COG3560 Predicted oxidoreductase related to nitroreductase - Prom 3471 - 3530 5.8 5 4 Tu 1 . + CDS 3647 - 5116 1198 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 5285 - 5339 12.9 - Term 5273 - 5327 16.7 6 5 Tu 1 . - CDS 5443 - 5769 435 ## LC705_01487 hypothetical protein - Prom 5789 - 5848 3.5 Predicted protein(s) >gi|225002515|gb|ACIZ01000064.1| GENE 1 125 - 1798 1683 557 aa, chain - ## HITS:1 COG:L159505 KEGG:ns NR:ns ## COG: L159505 COG2759 # Protein_GI_number: 15672917 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Lactococcus lactis # 2 557 3 555 555 709 64.0 0 MSDIEIAQANEASSMWPITKVAASIGLTADDLELYGKSKAKLSFTALNALKDKPFGKLVL VTSINPTPAGEGKSTITVGLGDALQQRGQHPVIALREPSLGPVMGMKGGATGGGYAQVVP MEDINLHFTGDMHALTTAVDTLAALIDNHLQQGNTLNIDPRRILWKRALDINDRALRHVT IGLGGPTSGVPREDGFDITVASELMAVLCLAENIADLKARIGRIVIGYTYDRKPVTVGDL KVTGAIAMLLRDALKPNLVQTLEHTPAFIHGGPFANIAHGCNSVLATRTALQLGNIAITE AGFGADLGGEKFMDIKTPVLGKTPDAVVIVATVRALKYNGGVALADLQQENLDALAKGFA NLKRHIHSMQGYGVPVVVAVNRFTSDTDAEIQWLIDACAKLNVKAVTATVWADGGRGGLA VADAVLDALNQPSHFTPLYDRNSDVKEKIKTIVQKIYGGADVVYEGKANAALRTIAKNGW QDLPICMAKTQYSLTDNAKTLGAPEGFTIHVRDIIPKLGAGFLVVMTGTVLTMPGLPKAP AALNMDVTDDGKISGLF >gi|225002515|gb|ACIZ01000064.1| GENE 2 1811 - 2167 277 118 aa, chain - ## HITS:1 COG:no KEGG:LC705_01482 NR:ns ## KEGG: LC705_01482 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 118 17 134 134 197 100.0 1e-49 MFWSAIVFGLSLAIILQLESTNLSWLAVAVAGITILVAIVQILLLRLVATPKGLRLTSFF KSNTINLAWADIEDFTNGRLTVMLKTKQYGRVSFLMFGKKRKQKIVALIKKGLETSTK >gi|225002515|gb|ACIZ01000064.1| GENE 3 2240 - 2638 309 132 aa, chain + ## HITS:1 COG:BH1770 KEGG:ns NR:ns ## COG: BH1770 COG0328 # Protein_GI_number: 15614333 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Bacillus halodurans # 1 125 1 126 135 80 38.0 9e-16 MLKLYTDGATKGNPGPAGIGILVSGLPQQIQHHAALPAMSNHEAEFAAAIAGFKLLIESS LTTGTVAYYSDSKLVIQAIEKRYAKHYPALTAELLSLIDEFPLVLPNWIPDRQNRGAHHL AQQGLHQAETES >gi|225002515|gb|ACIZ01000064.1| GENE 4 2755 - 3357 719 200 aa, chain - ## HITS:1 COG:BMEII0772 KEGG:ns NR:ns ## COG: BMEII0772 COG3560 # Protein_GI_number: 17989117 # Func_class: R General function prediction only # Function: Predicted oxidoreductase related to nitroreductase # Organism: Brucella melitensis # 1 199 1 198 199 205 51.0 5e-53 MNQDLLNLLKQRRSIYALGKDIKQNPDELVALIESVIQETPTAFNSQATRAVFLFGEQHD KLWDIVVKRLKSEVPSEEAYEATKKKIAGFKAAFATILYFTDTDVVKQLEKNFPLYADNF ATWAEQSQGSAQLNTWVTLANNGIGANLQHYNPIIDDLVREAFDIPANWQLRAQMPFGSI EGEANAKDYMDREQQFKVLK >gi|225002515|gb|ACIZ01000064.1| GENE 5 3647 - 5116 1198 489 aa, chain + ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 1 489 8 487 487 452 45.0 1e-127 MSLITWLIIIILVLNTIGAIFTVLREVRDISTTWAWLLVLIFLPIIGFGFYLFAGRGLST KKLRRIQREYESGVKAFVSLQKHENARNKLLPPTDYTPAAKALTAFFLNTAQAPVLAHNQ VQLYTDGEKKFAALFRDIEAAKHYIYVEYYTIYNDELGNQFQQLLIKKAKQGVTVKVLYD AWGSMGASAKWWRRLTDVGGQAESYFSSKHPITDFRLNYRDHRKIVVIDDHVGYIGGFNV GDQYVSRKPKFGYWRDTHLRIVGNTIYALKIRFTMDWNATVDEQKEIAYNVEQSGAEDLT SESMTAGSTPIQIVASGPDRPTQQIKLGYTKLITSATKSVWIQSPYLVPDDTVIDALVSA AMSGIDVRIMVPDMPDHPFIFRATQYYANYLARSGVKIYHYQHGFMHAKTVVVDDAIASV GSANFDIRSFKLNFEINAFIYDRKIAGTLAEIFQADMAKSYLLTPEIISNQGWWLRFKQD FSRLLSPIL >gi|225002515|gb|ACIZ01000064.1| GENE 6 5443 - 5769 435 108 aa, chain - ## HITS:1 COG:no KEGG:LC705_01487 NR:ns ## KEGG: LC705_01487 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 108 1 108 108 171 100.0 9e-42 MKRDKKADEAAVIDMNDTLMDYAHKRQPHVDDLAEELANRAKDNLEAIDTYLNDGGEARK EYQAIAEGYLRDKYNLDGDELLTARDELVHAAIHYLLGHTKVLDDWQR Prediction of potential genes in microbial genomes Time: Wed May 25 19:53:29 2011 Seq name: gi|225002514|gb|ACIZ01000065.1| Lactobacillus rhamnosus LMS2-1 contig00068, whole genome shotgun sequence Length of sequence - 33009 bp Number of predicted genes - 24, with homology - 24 Number of transcription units - 12, operones - 6 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 96 - 1547 797 ## LC705_01489 transcriptional regulator + Prom 1821 - 1880 6.4 2 2 Op 1 2/0.250 + CDS 1908 - 2138 242 ## COG0695 Glutaredoxin and related proteins 3 2 Op 2 24/0.000 + CDS 2206 - 4377 1778 ## COG0209 Ribonucleotide reductase, alpha subunit + Term 4389 - 4417 1.4 4 2 Op 3 . + CDS 4429 - 5409 935 ## COG0208 Ribonucleotide reductase, beta subunit + Term 5427 - 5489 12.7 - Term 5421 - 5471 11.1 5 3 Tu 1 . - CDS 5568 - 6458 813 ## COG0583 Transcriptional regulator - Prom 6505 - 6564 5.2 - Term 6630 - 6665 7.4 6 4 Tu 1 . - CDS 6674 - 8578 1510 ## COG3590 Predicted metalloendopeptidase - Prom 8608 - 8667 3.0 + Prom 8781 - 8840 5.3 7 5 Tu 1 . + CDS 8945 - 9958 936 ## COG0095 Lipoate-protein ligase A + Term 9978 - 10031 12.0 - Term 9974 - 10010 7.0 8 6 Tu 1 . - CDS 10034 - 10261 323 ## LC705_01496 hypothetical protein 9 7 Op 1 . - CDS 10477 - 11412 796 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 10 7 Op 2 . - CDS 11424 - 12563 1131 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 12606 - 12665 5.7 11 8 Tu 1 . + CDS 12913 - 13299 117 ## LGG_01483 hypothetical protein + Term 13536 - 13568 -1.0 - Term 13309 - 13345 -0.3 12 9 Op 1 6/0.000 - CDS 13408 - 13806 455 ## COG3599 Cell division initiation protein 13 9 Op 2 . - CDS 13862 - 14437 629 ## COG4474 Uncharacterized protein conserved in bacteria - Prom 14472 - 14531 3.8 14 10 Op 1 7/0.000 + CDS 14504 - 15130 496 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 15 10 Op 2 . + CDS 15123 - 17432 1961 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 17500 - 17547 12.4 - Term 17487 - 17535 11.0 16 11 Op 1 . - CDS 17551 - 18015 339 ## COG2131 Deoxycytidylate deaminase 17 11 Op 2 6/0.000 - CDS 18012 - 18662 496 ## COG0177 Predicted EndoIII-related endonuclease 18 11 Op 3 4/0.000 - CDS 18717 - 19337 719 ## COG3935 Putative primosome component and related proteins - Term 19347 - 19379 1.1 19 11 Op 4 5/0.000 - CDS 19392 - 20690 1124 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases 20 11 Op 5 5/0.000 - CDS 20714 - 21889 1100 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 21 11 Op 6 2/0.250 - CDS 21942 - 22433 622 ## COG5353 Uncharacterized protein conserved in bacteria - Term 22759 - 22820 22.2 22 12 Op 1 . - CDS 22835 - 25636 1945 ## COG1199 Rad3-related DNA helicases 23 12 Op 2 8/0.000 - CDS 25680 - 29390 2927 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 24 12 Op 3 . - CDS 29387 - 32926 2581 ## COG3857 ATP-dependent nuclease, subunit B Predicted protein(s) >gi|225002514|gb|ACIZ01000065.1| GENE 1 96 - 1547 797 483 aa, chain - ## HITS:1 COG:no KEGG:LC705_01489 NR:ns ## KEGG: LC705_01489 # Name: not_defined # Def: transcriptional regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 483 1 483 483 904 100.0 0 MAFEEIFLDREERDRLAIYGTLRDAPNHQLNIVTTSMARGESYRQLRRLMEKVAADLHEI DPAAPPLLHRGDSNMTAPPAISRVRYRIFLYRRSLPGKLLVKTLMAPTSTLSDLLTETGF SRAAFFRRISALRLYLRRAEVSINLTPLSLIGSEPRIRQIYRQLLWQLVDIGNPLFADIL PESRQLIKALQAAGMVQRDFSVAQLLFSANINLHRLKAHHSIAGTLNFSALKPQPSLPKK IPAPLANLPRATAEAEMLYLYLGQWRIPRFHTEQQFDAATLVGYHAANETPAWQTVAKIR TELSTRLVGISPSVTNDLALAGNLLKILISERIFPGGAYIDLTKTASPMRAFYPRLETAI KAFFARELPTEKSRPEIVDGFYQLLWPFMTDSAVSDKLKVALDPMMPQPLYETVRLNLMH PAYIRLVTVAQHPDLVISAQALAPGEEPIVPDTPVFYLASDRFESWSALYQELFHRSRQL LHR >gi|225002514|gb|ACIZ01000065.1| GENE 2 1908 - 2138 242 76 aa, chain + ## HITS:1 COG:SPy1374 KEGG:ns NR:ns ## COG: SPy1374 COG0695 # Protein_GI_number: 15675306 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Streptococcus pyogenes M1 GAS # 4 74 2 71 72 84 52.0 7e-17 MRNITLFTRNGCPQCRMTKRYLDTHNISFTEHNINEEPEYIDYLKKKGFQQVPVLEADGL DSFSGFRPDALKQLAV >gi|225002514|gb|ACIZ01000065.1| GENE 3 2206 - 4377 1778 723 aa, chain + ## HITS:1 COG:SP1179 KEGG:ns NR:ns ## COG: SP1179 COG0209 # Protein_GI_number: 15901044 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 723 1 719 719 1070 71.0 0 MSLKTISPDEVTYYALNNEINIPVNDQIPLNKDKEALQAFLTENVAPNTMKFASLQERLK YLVEHHYYEADFLKKYQPAFLEKLNQFLTAQHFQFKSFMAAYKYYAQYALKTDDGTQYLE DYKDRVFANALFFADGNEDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQIT DDMNSIGRAINSALELSRIGGGVGLTLSNLREAGAPIKGIDGAASGVLPVMKLLEDSFSY SNQLGQRQGAGVVYLNVFHPDIISFLGAKKENADEKYRVKTLSLGVIVPDKYYELIKANA DMYLFSPYSVERAYGKPFSYVDITKEYDKMVANPDIKKYKIKARDLENEISKLQQESGYP YIINIDTANRANPIEGRIIMSNLCSEIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPN LMHSRDFGHSVEAMVRALTYVTDHSNIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMY YGSPESLDFTNIYFLLLNYYTLKASNKIAKERGESFHNFENSKYADGSYFDKYLNQTWAP KYDKVRDLFKNIHIPTQADWQALKEDVMKNGLYHQNRMAVAPNGSISYINDTSASLQPIV NRIEDRQEKKIGTIYYPAPGLSNDTMPYYQSAYDIDMRKVIDVYAAAQQHVDQGMAMTLF MRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKGIKSIYYIRTYTDDQEEIGSNACES CSI >gi|225002514|gb|ACIZ01000065.1| GENE 4 4429 - 5409 935 326 aa, chain + ## HITS:1 COG:SP1180 KEGG:ns NR:ns ## COG: SP1180 COG0208 # Protein_GI_number: 15901045 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 317 1 317 320 481 77.0 1e-136 MVKQYIAINWNAIEDEVDKATWEKLTEQFWLDTRIPLSNDLDDWRSLSPDEQWVVGHVFG GLTLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEI FDWTNHNEHLQYKANKINDIYHNGSALQKKIASVFLETFLFYSGFFTPLYYLGNNKLTNV AEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQQLQDWMYDLLYDLYENEEKYTNDLY AKTKWTDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIVMNGISTSTANHDFFSQVGN GYRLGQVEAMEDDDYSFSTEDKGHKD >gi|225002514|gb|ACIZ01000065.1| GENE 5 5568 - 6458 813 296 aa, chain - ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 287 1 287 291 204 36.0 2e-52 MELQTLRNFIEIADHGSITAAARTLGISQPGLSRQLKDLEKELGVKLLIRGNRRVTLTED GTYLLNRARELTAIAERTKNNLQGKHALGGDLYIGAGETSGKRLMLQLAQSLRLQYPSLH VHVTYGSDESLVANLEAGMYDFILRPGKEHTQYERLLLPMRDAWGILMDTEDPLTDNLLI TPNDISDSELILPRATHIRNSFEHWLGQGLDPAYIVGTYDLTADALGMTAVGLGRALCLE YLATQTSNTSLTFRPLAPALADPVALVWKRDRELSRIAQHFLELVHEKIASDKTES >gi|225002514|gb|ACIZ01000065.1| GENE 6 6674 - 8578 1510 634 aa, chain - ## HITS:1 COG:L49741 KEGG:ns NR:ns ## COG: L49741 COG3590 # Protein_GI_number: 15673785 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Lactococcus lactis # 6 634 3 627 627 507 42.0 1e-143 MTSEVRYQDDLYQAVNGAWMKQAVIPDDKSSTGGFQDLADEVEEKMMADFAAVSAGKKQA PDKYFAQAVTLYQQAKDFKTRDAAGFAPAEPRLNLVKGIKDLADYNQRAANLLQEHLIDP PFNFFVDVDMKDTSKNVINLMGPKTILPDTSYYAKDNQNGAQLLGIFKDMMQQLLAYTDL DEAAQKATLEGALAFDAEIAKHVKSSEEWADYPKAYNPTPTSTVIEKLKPFNFEDLLKTI FKNVPETIVVADPRFLNEFDQLFNEANFKLYRDWLYVMTLGDVAGFLSEPLRQLSGTYNR ALSGAPKSPDQLKHAYRVANRYFSEPIGIYYGRTYFGEKAKADVTQLVEKMIATYKQRLA NSDWLSQPTKDKAILKLNKMVLKMGYPDHPEAIYDLLHVDPNRSLLENLFAMRKVQVQYN FDKLTKPVDRTVWNMPGHLVNASYDPSKNDITFPAAILQAPFYSLKQTASENLGGIGAVI AHEISHGFDNNGAQFDEYGNMANWWQKADFDHFHELTQAMIDEFDGLETAAGKVNGKLVV SENIADAGGLAAALDTAKREKDADLRAFFINWARIWRSKSRLERAKMLLAVDVHAPHELR ANIQPRNLDDWYTTFDVQPGDGMYLPPEKRVQIW >gi|225002514|gb|ACIZ01000065.1| GENE 7 8945 - 9958 936 337 aa, chain + ## HITS:1 COG:lin0931 KEGG:ns NR:ns ## COG: lin0931 COG0095 # Protein_GI_number: 16800002 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 1 335 1 330 331 303 47.0 2e-82 MYYVIMKSHDIRENLATEQYLMNAKQFDEPLLLFYYEKPSVIVGRNQNTLEELNQKYVED HNIVVTRRLSGGGAVYHDLGNLCFSFVVDSDSEEFGDFKSFTQPIVDAIHTLGATSAEVS GRNDMLVDGKKFSGSAMYTRNGKTFSHGTLMLDVDMSVIPNVLNVPEDKIKSKGIKSVKS RVTNLRPYLDKKYQNLTVPEFRDILLTRLFGVDDVAAIKDKEYHVTPEDEVEIKKIYDDV YNNWDWVYGHSPEFTTKKRKHFDYGTIDARFDVKDGKIANVKFYGDFFGPQDVSDVAAAL KDKPYTSEAVKKTLDAIDTNAYFTNIPKEDVINLLVP >gi|225002514|gb|ACIZ01000065.1| GENE 8 10034 - 10261 323 75 aa, chain - ## HITS:1 COG:no KEGG:LC705_01496 NR:ns ## KEGG: LC705_01496 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 75 1 75 75 126 100.0 3e-28 MAQRPEEITNLLQDALHTQQEVAINTIDRHRLKGRVIDIEAATVKPYNERGVITVETGRG AKRIQAYAISQVKYN >gi|225002514|gb|ACIZ01000065.1| GENE 9 10477 - 11412 796 311 aa, chain - ## HITS:1 COG:BH0949 KEGG:ns NR:ns ## COG: BH0949 COG0111 # Protein_GI_number: 15613512 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Bacillus halodurans # 1 311 1 316 316 170 30.0 3e-42 MKILNSFNLKPEQRQALEKAGHVVIDDNQLDQATAQQIDVVYGWHDQSAQVNFDHLRFVQ AISAGVDYLPLADFAKHQVLLANTSGIHAEPIAEYVLGVLFTISRGILPPVRAGRQMWTF RQQQPPMTLLKGQTAVIFGTGHIGSTIATKLHALGLHTLGVSAHGRPAAGFEEVVTDANA HTAAQNADILINALPLTSATKHFYNSEFFSGLQNQPLFINIGRGASVDTPALVQALQTQQ LRAAALDVVDPEPLPQDSPLWDMGNVLLTPHISGTVPHLRDQVFKIFNDNLQSLIASGQL ASHQVDLSRGY >gi|225002514|gb|ACIZ01000065.1| GENE 10 11424 - 12563 1131 379 aa, chain - ## HITS:1 COG:SPy1644 KEGG:ns NR:ns ## COG: SPy1644 COG0116 # Protein_GI_number: 15675517 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Streptococcus pyogenes M1 GAS # 3 372 5 377 384 451 57.0 1e-126 MNYQLVATMAAGLESVTTKELKALGIQTRTENGKVYFEGNDQTIALTNVWLRSADRIKIV IGQFKARTFDDLFEGVKALPWDHFLPLDAAFPVAGRAVRSQLHSEPDVQAITKKAIVEKM SAVYHRTTRLPETGATYPLEVSILKDVATLTLDTTGPSLFKRGYRIAKGEAPLKENFAAA LVLLTNWHPDMPFVDPTTGSGTIAIEAALIGHHLAPGLQRHFAFEDFGFFDQSVLQTTKD QAMDAADFDRELDIQASDINGDMIDMAKLNAQQAGLLHSIRFKQLAVKDFSTTKENGVIV ANPPYGKRLSDQAMVRQLYKEMGQAFAPLTTWSKYILTSDMGFEKAYGSQATKRRKLYNG TIRTDLFQYWGKPNWHHNK >gi|225002514|gb|ACIZ01000065.1| GENE 11 12913 - 13299 117 128 aa, chain + ## HITS:1 COG:no KEGG:LGG_01483 NR:ns ## KEGG: LGG_01483 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 128 1 128 128 234 99.0 6e-61 MAKDQPFSLKATYTPTSNRAGSRSQKNSPGFPGLCLHVDPYKPCFVPEPVQARVPSVIIY LSVAAVLPLLQFAWQNAPTKSLGYSLAGFTRSTVQVSLNVSSLWHFSDLLTHNRSLSVVG RRNRSHGP >gi|225002514|gb|ACIZ01000065.1| GENE 12 13408 - 13806 455 132 aa, chain - ## HITS:1 COG:lin2002 KEGG:ns NR:ns ## COG: lin2002 COG3599 # Protein_GI_number: 16801068 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 8 115 5 112 113 94 46.0 4e-20 MDSNKETKFSIQYGPKDILDKKFKNKVRGYDPDEVDEFLDGIIRDYEAFTNEIDRLKEEN AKLFSRVDELTKQLSVSKNVSAQTPQTNAAATNYDILKRLSNLERHVFGSKLSDSGSVDN RDDSNHSDVDQY >gi|225002514|gb|ACIZ01000065.1| GENE 13 13862 - 14437 629 191 aa, chain - ## HITS:1 COG:BS_ypsA KEGG:ns NR:ns ## COG: BS_ypsA COG4474 # Protein_GI_number: 16079277 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 4 179 2 177 180 139 39.0 3e-33 MAGKRLWITGYRAYELNVFGAQDPKLKVLKTSLKNTLTQFLDEGLNWLITGGQLGVEQWS IEVALTLKPLYPEFKIAMMLPFTDFGSQWNDNNKAQLAALRQQVDFSDAVSQAPYQKPAQ LQGYTRFMTAHTDAAVIVYDPEFPGKPQWDYRAAEDMANRRDYPVTLITMDDLQETSEEL AEAENEHFQND >gi|225002514|gb|ACIZ01000065.1| GENE 14 14504 - 15130 496 208 aa, chain + ## HITS:1 COG:BH1703 KEGG:ns NR:ns ## COG: BH1703 COG3331 # Protein_GI_number: 15614266 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Bacillus halodurans # 1 196 1 194 199 205 53.0 5e-53 MTIRYPNGNPYKDGTQFSPDAVSRPTIYGGRGMTLEEELNLSNQYYRSIDKAVVYKKPTP VQIVKVDYPRRSQAVIREAYFKTPSTTDYNGVYRGYYLDFEAKETKNKTSFPLKNFHQHQ IDHFRRCLKQNGICFVVIRFATIRRLFVFPAGRLITCWDQQSTGGRKSIPLTKIIQHGFE LHPQLQPVVPFLDGVDWLIETKVGNVRG >gi|225002514|gb|ACIZ01000065.1| GENE 15 15123 - 17432 1961 769 aa, chain + ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 31 656 8 638 719 521 47.0 1e-147 MANNQNMSRMARRREGKQSKSPKPPKKLWRRILKWTLLGLLLIFIAGVGLFSWYAKDAPE VTQAKLESGGSSTIYDRSGNEITTLGLENRDYVKASEIPQQLKDAVVSIEDRRFYDEKLG IDPVRILGAAFNNMTGTGDGLQGGSTLTQQLIKLSVFSTKSSDQTLRRKAQEAWLAMQVQ QKYSKDQILEYYINKVFMNYGQYGMSTGAKFYFNKSLKDLSLAQTAFIAGLPQSPAGYDP YEYPQKATQRRNAVIDAMLRDKKITAAAAKQAKATPITDGLQPKQQQTNTTTNDKVIDSY LTQVIAEVKKKTGLNPYTDNLDIYTNIDMSAQKRLYDIVNTDDYVSFPDDAFQTGVTMTD PDNGQVLAQIGGRKTGDVRLAYNRAAQNTRSNGSTMKPLMDYGPAIEYLNYSTYEQMTDE PYKYPGTTISLYDWDKKYQGRISMRTALEQSRNIPAVKTLSAVGMTNAVKFLKGLGIDLP ASEQYLSSAIGASVNTVEEAGAYGAFANGGTYYKPYYVNKVVSADGNTQTFNSQGTRAMK SSTAYMITDMLKGVLTKGTGTSAAISGLYQAGKTGTTDYSDEELKQNPALNATGIAKDAW FTGYTRNRVISVWTGYDKPTSHGISYAEQTISQKIYKALMSYTSQNLDNKDWTKPDTVES YNILKGSNPGTAITSGSANTTKELYVRGHGPSSHKAVAESSSSSSASSESSSSKESSSES SNAVSASVASSASSSNVSSAAPSSATPSKEEPSASSEPASSAGGPGGNQ >gi|225002514|gb|ACIZ01000065.1| GENE 16 17551 - 18015 339 154 aa, chain - ## HITS:1 COG:SPy1823 KEGG:ns NR:ns ## COG: SPy1823 COG2131 # Protein_GI_number: 15675651 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Streptococcus pyogenes M1 GAS # 13 149 3 139 153 169 57.0 1e-42 MTDTIMPSKRTVHRESWDHYFLELAKKVSERSTCERATVGAVLVQEHRIIATGYNGAISG DPHCDEAGHLMRDGHCIRTIHAEMNAIIQCAANGVSTHGATVYVNFFPCLNCTKALIQAG IKRVVYAHDYRNDPYGETLLAQHHVAVVHLEQQA >gi|225002514|gb|ACIZ01000065.1| GENE 17 18012 - 18662 496 216 aa, chain - ## HITS:1 COG:SP1279 KEGG:ns NR:ns ## COG: SP1279 COG0177 # Protein_GI_number: 15901139 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Streptococcus pneumoniae TIGR4 # 1 200 3 202 209 189 47.0 2e-48 MTDSEARQLFEQIMALYPDPQPTLQAQNPFQILVAVMLSAQTTDVAVNAVTPELFAAYPT PAAMAAASVTDISKKISRLGLYRTKAAHLKALSAILVEKYDGQVPANAADLVKLPGVGKK TATVVLSDAFGIPGVAVDTHVSRIVKGLGLVSPKATPVQIQSRLETLMPKSTWIKLHRSL IRFGREHLRARDPQPPSGPEWTFLATHYAPLKGEEH >gi|225002514|gb|ACIZ01000065.1| GENE 18 18717 - 19337 719 206 aa, chain - ## HITS:1 COG:BH1697 KEGG:ns NR:ns ## COG: BH1697 COG3935 # Protein_GI_number: 15614260 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus halodurans # 4 197 6 200 233 106 31.0 3e-23 MTDLKRYIEAGQFNVSNLLFDNYPTLGLTQTEFITYLFIDQWQSKHHQAPDLKALAARMN VAPNAIYTAIETLIQKQAIVLESIPDGQGKMRDHYDLAPLLAKLPANQKAHSSVMSQPNA DAQTNVFNQIEIEFGRPLSPIEQETIRDWLTTDHYLPEVILLALREAVLNAAYSLKYMDR ILLNWERRHLKTAQQVQAELKRHQEL >gi|225002514|gb|ACIZ01000065.1| GENE 19 19392 - 20690 1124 432 aa, chain - ## HITS:1 COG:lin2010 KEGG:ns NR:ns ## COG: lin2010 COG0017 # Protein_GI_number: 16801076 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Listeria innocua # 4 432 2 430 430 588 65.0 1e-168 MTEKIRIIDAKEHVNEEVTIGAWLTDKRSSGKIAFLQLRDGSAYFQGVVSKADVPDEVFQ LAKELRQESSMWITGVIHQDSRSHFGYEIEVRNIELVGDSHDYPITPKEHGIEFLLDHRH LWLRSKRQFAIQQIRNEMIRATFEFFNNEGFIKMDPPILTDSAPEGTTELFETDYFDKKA YLSQSGQLYAEAGAMAYGKVFTCGPVFRAEKSKTRRHLTEFWMIEPEMAFCHQEESLKVQ ERYVAYMVQAVLDNCAYPLHLLGRDPEVLKQYTKLPYPRISYKKAIEMLQAAGMDVKYGD DFGSPEETYLSDQFDQPVFVLNYPKAIKPFYMLTDPEDEQQYVCADMLAPEGYGEIIGGS ERETDYDKLKAAIEKAGLDLDEYEWYLDLRKYGSVPHSGFGLGLERAITWICKLDHLREA IPFPRMINRLKP >gi|225002514|gb|ACIZ01000065.1| GENE 20 20714 - 21889 1100 391 aa, chain - ## HITS:1 COG:SP1544 KEGG:ns NR:ns ## COG: SP1544 COG0436 # Protein_GI_number: 15901387 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 390 1 391 395 410 52.0 1e-114 MHLAKRILNVAPSATLALSNQTKDLKAKGADVIDLSIGQPDFSTPKAIDDAAIAAIQAGN ASFYTAATGIPELKQAISDRIFAQDGIRYDHRQIVATTGAKFALYALFQVFLNPGDEVLI PVPYWVSYEEQIKLASGVPHLVMPAVGHKVSVDDLEAARTDKTRALIINSPQNPSGVVYD RTELTLIGNWALKHHILVVTDDIYRDLIYNGTTYTSMISIDPDIAANTVLISGVSKSYAM TGWRIGYAAGPEKLIQAMATFISHTTSNPAAVSEYAAVAALTGDQQVVEKMRRAFEERLN LFYDLLADIPGFDMGDKPQGAFYLFPNIKRAAQLSHYGTVDDFISALLTETGVAIVPGRA FGMPDHARISYCKDLASLKEAARRIREFVGK >gi|225002514|gb|ACIZ01000065.1| GENE 21 21942 - 22433 622 163 aa, chain - ## HITS:1 COG:lin2012 KEGG:ns NR:ns ## COG: lin2012 COG5353 # Protein_GI_number: 16801078 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 24 163 32 173 173 73 32.0 2e-13 MRHHRRFDWVKFLFIGGLIVLIIAAIGIYAKSLSPYQQLRDQAEKIATNRADLKTVNGFW WYNRDKSYLTVAGQTKKNQSVYVVIQKKTGKVTILNQKSGITRQKAIQQVTQTSAPKKIL NASLGKRGSEFVWDIGYLSKSGKLNYVTYSFRSGEQLNAIKNL >gi|225002514|gb|ACIZ01000065.1| GENE 22 22835 - 25636 1945 933 aa, chain - ## HITS:1 COG:BH1691_2 KEGG:ns NR:ns ## COG: BH1691_2 COG1199 # Protein_GI_number: 15614254 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus halodurans # 250 906 36 698 716 272 30.0 2e-72 MNADTTFAVVDLETTGTSVKDGDRMIQFGCALVRHGKIIQTISQMINPDRSVPQTIQRLT GISPERLVAAPYFDEVAPALHQVLTKTVFVAHNVNFDYPFLNAEFERIGLPKLQLEAIDT VELAQVLLPEISSFRLSDLTTHFAIQHDNPHQADSDATSTAKLLLQLKARFQALPTPTQQ ALIQRHDGFIRETGDYLKMIASPPRPLKKEFVQVGPLVLRRPMTTPTDLAAAGAYPATEL AKKHLLQPRYRFRKAQAKMMDAIFTHAQKTEIPLFIEAGTGLGKTLGYLLPYAYLATPEH KLVVATSTLVLQTQLITQAIPALDALLGRTLPTVELKSPQHYLDLNKFAASLHQEGPTRQ TQLLQMKLLVWLTQTTTGDLDELHLTTYRAPLFAEIRHTGDVGTPFINPFYTFDFYRRLQ AKLADAVVVVTNHAFLSRHADTLPFKRPFLVVDEAQHFADNTAAAFARRVALDHLNHHLH RVWQLSEPDERHSLTAIYQSEPAMLTVLQQLNQQAATAETAVNTLQRQIHRHFFFGKTTA ASGFVNLSLDSAAAKWLEQTQTTTIKSLIKVLGRLTVTTDKLIADFNRRPHFFLKSDGQQ FQALAALRIALADHRRLLQELLSRLPDLIAGQAVMMSVNLRQITDVASLELSWDVFQVGS AVQQLIHHFEAPVFVGATLTAERSFDFLTAQLGYHKLPESSFLKLRSPFHYRDQAKVLVA TDAPHAADVSDDAYADYLAMAIEQLADNQYQTIVLFNSLSVIEAVYQRLIHRPIAGHKEL LAQGVTGSAEKIAKRFAVGDQSLLLGAASFFEGIDYPDRLLEIVILTRLPFDAPEAPITK ARYRQIQLSGGDPFTEDALPRAILRLRQSFGRLIRTETDRGAFIILDPRFITTAYGKKMQ KSLPNIKPMTLPLTDIPGYIRMWLRNKSANRPV >gi|225002514|gb|ACIZ01000065.1| GENE 23 25680 - 29390 2927 1236 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 2 1229 9 1232 1232 627 34.0 1e-179 MTQFTPSQQAAISHHGHDMLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA TSEMRTKIQTALKQTLTAKRHELNAEDRRHLANQIAMVNAAKISTLDAFSLQIVQTYYYV IDLDPGFRLLTDETERYMLQEQVWNDLREQFYAGDEAAEFEQLTANFSGDRDDSGLQDLM FELMRQAAATTDPKAYLQQLAKPYAPEAWAATFTHQIWPRTKRKLMQVFTTLTQADELAN RLPNPVWHQQITADLNPLQSLLDNPEPSYEAVRDALVQHDFLAWSRASKGLDDDDKALKN EAKQLRDAAKKIWQDQLAPDFALTSEQITDLLRTVQPMMTMLTEVALTFLDALTAEKAVR HVQDYSDIAHNALRILQQKDPQTGAPIADNYRASFDEVMVDEYQDISPLQEALLAAVSTT DPGDRFMVGDVKQSIYGFRLADPQLFIQKYQAFANHPETPTAPERIILAENFRSTKNVLA FTNLIFSQIMDPEVGDLAYDDNAALKYGALDYGDCHPAVKVMLYSKATSDDDDETDATSD WSATDEDDEPLDVATGQTQMVIAEIQRLVSDPHAQLWDRANQQYRRIRYRDITLLTRQTT QNSLIQTQFAAAGVPLFVADTKNFFKTTELMVMLALLKIIDNPKQDIPLVAVLRSPIVGL SADQLALIRLAAKQVPYYDAVTAFLTGTPTTPLAKRTHATLAAFLDQLNHFRDLARENDL VTLLWAIYQETGFLDYVGGTPGGSQRQANLLALVDRARTYESGGFKGLFAFIHFITLMQK QDQDLATPAQVDPDNDAVKLMTIHKSKGLEFPVVFVLQTNKHFNRRDQSGPAILTKNGIG IKWLDPQTRVEYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVGATMSGQQLT SADKTVAKWAKAAEGEQLTLAPQIRGAATNYLDWIGPALIRHPQVKGLTETTVKPALIAD PTEFSIAIETHPQIKVGVATKTPAKTDAPAIDLTGWFAKQYPFQAATTTAGFQSVSEIKR AFDDPDTMELVSADRFLGQKPPLHDLSAPAFLTETSGGGNAAAIGTATHLLLQLVDLTKP ITLNSLEALRHHLITTGVMPAEVAKRIDLTALVRFFATDLGQLLQAKPQQVQREVPFSML LPANQLFEILQNDPGEDVLVHGIMDGYVTEADGVTLFDYKTDHEPDPAKLVARYRGQLNL YAQALAQLQPEPVTHRYLVLLRTGTIVDLVAESTGK >gi|225002514|gb|ACIZ01000065.1| GENE 24 29387 - 32926 2581 1179 aa, chain - ## HITS:1 COG:BS_addB KEGG:ns NR:ns ## COG: BS_addB COG3857 # Protein_GI_number: 16078126 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Bacillus subtilis # 1 1172 1 1166 1166 427 27.0 1e-119 MGLQFILGDATTDHTQTMAAMIHEKLTADSQNRIFLLVPNHIKFEAEIDLLKRLRQLQQG NSETYVQSRVQVLSFSRLAWFYLKNTPLYQQPRLDQASNTMLVAKILAERQADLTIYAGE AQHTGFVTQLAGQLSELMIGRITAEDLANTVAALTPGDRHRAKLRDLGIILDQYEAEIGP YATTASLLSGLQQAMRTHDLTHTFIYLNHFNVFSASESALVETMLETAAEVTIGLVLDRP YPTAPPVAPNLFLPAGRLYHRLYQKAKTMRIPIRLDRFAQPRHLSLGMRQVASWWQANTN IEPQPAPTANVADHVHLATATDPYQELRHVAQSIYQAVRNGARYRDFVIIARRLDPYATI IPAIFAEFQIPQFTDLQRPMKDHPLVVLIESLFAIQDHDYQYQDIMRLLHTELLLPQGMA VADFRDAVDTLDNHLVRTGIAGKRRWTQTEPWRYFQRNPAADETEMDPEADKTAQINAIK TLVAQTVPALLKQWQAAKTGLEAARSLYHWLTKIGVVDQLNAWREAASAAGELARSRAHE QAWTTFTALLDDYVTILGNAKFNREQFHELLAAGFASATYTQIPATLDAVVISETGLVRL AKAKHVFVIGATSTAMPDVPNDDGVLNSEERQLLAAQLPDDRFLPEQGPTTTLGDPFINY LGFMAASETLTLSYPMQNPQENSENQASPYFQQLKRALHLVPETWAPVTLATTVKSVLGS PRAMLSDFIRAAGDAQQQKQPLSLAWQSVLNALKQTDLANLAQRLAGSLTYQNDPGRLDP QLAVQLYGRDMNVSVSRLETYYLNHFEYFLKYGLLLQPRPEFELSPADTGSLFHAVLDRY LTQLRDQQQNLADVEPAAIMAAVPPMVAEIAKQPGYEILGSTYRMTYLTKRLSRLLIQVL LNMRQQQQRSGFRPVRTELQFGRIGDTKGLPGLSWPLPHGGRVNVHGKIDRLDIYREPDA RRFIIVDYKSGQRRFDDSDAYYGIALQMLTYIEAMTNVTAEPPFVPAGALYFHLQDPKLK YTPELEPALERLKAFKYLGFLVAEHGDELAAVDRTISPESGGRSEIAPLGFKKDGSFNQN QSNVLTPEALRAYLAHNQALIIDAATQILAGDIALEPFQYGQSSTIVSRSDYQSIMLFDP ATGFDHYHHVPKLKRKDVIGRLTADPTQIPHSEKEHPQS Prediction of potential genes in microbial genomes Time: Wed May 25 19:53:56 2011 Seq name: gi|225002513|gb|ACIZ01000066.1| Lactobacillus rhamnosus LMS2-1 contig00069, whole genome shotgun sequence Length of sequence - 60374 bp Number of predicted genes - 62, with homology - 59 Number of transcription units - 24, operones - 15 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 226 - 285 4.3 1 1 Op 1 5/0.000 + CDS 307 - 1242 657 ## COG1577 Mevalonate kinase 2 1 Op 2 . + CDS 1250 - 2254 641 ## COG3407 Mevalonate pyrophosphate decarboxylase 3 1 Op 3 . + CDS 2220 - 3254 921 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases - Term 3262 - 3316 10.2 4 2 Op 1 . - CDS 3361 - 4692 610 ## COG0144 tRNA and rRNA cytosine-C5-methylases 5 2 Op 2 . - CDS 4679 - 5635 571 ## LC705_01517 membrane protein 6 3 Tu 1 . - CDS 5838 - 6581 496 ## LC705_01519 SAM-dependent methyltransferase - Prom 6609 - 6668 2.2 - Term 6634 - 6675 11.1 7 4 Op 1 . - CDS 6697 - 7047 464 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 8 4 Op 2 . - CDS 7081 - 7269 336 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog - Prom 7311 - 7370 5.1 9 5 Op 1 35/0.000 - CDS 7828 - 9333 1071 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 10 5 Op 2 . - CDS 9317 - 11029 650 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 11182 - 11241 6.3 11 6 Op 1 9/0.000 - CDS 11405 - 12199 886 ## COG0327 Uncharacterized conserved protein 12 6 Op 2 5/0.000 - CDS 12186 - 12896 593 ## COG2384 Predicted SAM-dependent methyltransferase - Prom 12925 - 12984 6.2 - Term 13034 - 13072 7.1 13 7 Op 1 31/0.000 - CDS 13085 - 14335 1361 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 14 7 Op 2 . - CDS 14349 - 16118 1265 ## COG0358 DNA primase (bacterial type) - Prom 16231 - 16290 5.4 - Term 16197 - 16236 5.1 15 8 Op 1 19/0.000 - CDS 16304 - 18373 2054 ## COG0751 Glycyl-tRNA synthetase, beta subunit 16 8 Op 2 . - CDS 18375 - 19244 714 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 17 8 Op 3 . - CDS 19342 - 19458 60 ## - Prom 19533 - 19592 6.5 18 9 Op 1 . - CDS 19679 - 20848 293 ## COG0582 Integrase 19 9 Op 2 . - CDS 20891 - 21211 288 ## LSEI_1506 XRE family transcriptional regulator - Prom 21285 - 21344 8.6 + Prom 21226 - 21285 7.0 20 10 Tu 1 . + CDS 21339 - 21485 73 ## LSEI_1507 hypothetical protein - Term 21447 - 21486 6.6 21 11 Tu 1 . - CDS 21498 - 21782 56 ## gi|229552315|ref|ZP_04441040.1| hypothetical protein HMPREF0539_1571 - Term 22098 - 22135 6.2 22 12 Op 1 . - CDS 22199 - 23314 899 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 23 12 Op 2 . - CDS 23359 - 23691 437 ## LGG_01520 phage-related holin 24 12 Op 3 . - CDS 23704 - 23919 226 ## LGG_01521 phage-related holin - Prom 24013 - 24072 2.0 25 13 Op 1 . - CDS 24086 - 24376 228 ## LC705_00887 hypothetical protein 26 13 Op 2 . - CDS 24394 - 27390 2032 ## LCABL_13420 hypothetical serine/threonine-rich protein P11E10.02c in chromosome I 27 13 Op 3 . - CDS 27391 - 29469 966 ## LGG_01524 phage-related tail component 28 13 Op 4 . - CDS 29470 - 33699 2338 ## COG5283 Phage-related tail protein 29 13 Op 5 . - CDS 33701 - 33859 221 ## LGG_01526 hypothetical protein 30 13 Op 6 . - CDS 33912 - 34262 414 ## LGG_01527 phage-related tail component - Prom 34341 - 34400 5.7 - Term 34337 - 34374 0.1 31 14 Op 1 . - CDS 34419 - 35075 633 ## LGG_01528 phage-related major tail protein 32 14 Op 2 . - CDS 35076 - 35456 244 ## LGG_01529 phage-related tail component 33 14 Op 3 . - CDS 35453 - 35872 450 ## LGG_01530 phage-related head-tail joining protein 34 14 Op 4 . - CDS 35875 - 36219 257 ## LGG_01531 phage-related infection protein 35 14 Op 5 . - CDS 36209 - 36499 275 ## LGG_01532 hypothetical protein 36 14 Op 6 3/0.000 - CDS 36571 - 38499 1042 ## COG3740 Phage head maturation protease 37 14 Op 7 2/0.000 - CDS 38499 - 39218 309 ## COG4695 Phage-related protein - Prom 39340 - 39399 3.2 38 14 Op 8 4/0.000 - CDS 39855 - 41756 719 ## COG4626 Phage terminase-like protein, large subunit 39 14 Op 9 . - CDS 41756 - 42235 165 ## COG3747 Phage terminase, small subunit - Prom 42478 - 42537 7.9 - Term 42646 - 42679 2.0 40 15 Op 1 . - CDS 42694 - 43776 418 ## COG0286 Type I restriction-modification system methyltransferase subunit 41 15 Op 2 . - CDS 43773 - 44060 134 ## gi|229552337|ref|ZP_04441062.1| hypothetical protein HMPREF0539_1593 - Prom 44272 - 44331 4.2 - Term 44307 - 44339 -0.2 42 16 Op 1 . - CDS 44465 - 44995 156 ## COG1403 Restriction endonuclease 43 16 Op 2 . - CDS 44979 - 45392 360 ## COG0629 Single-stranded DNA-binding protein 44 16 Op 3 . - CDS 45385 - 46068 313 ## LGG_01542 hypothetical protein 45 16 Op 4 . - CDS 46152 - 46370 175 ## LGG_01543 hypothetical protein 46 16 Op 5 . - CDS 46430 - 47032 266 ## SDEG_1118 putative endodeoxyribonuclease (EC:3.1.-.-) - Prom 47120 - 47179 5.5 - Term 47266 - 47299 2.0 47 17 Tu 1 . - CDS 47317 - 47541 157 ## gi|229552343|ref|ZP_04441068.1| hypothetical protein HMPREF0539_1599 - Prom 47580 - 47639 5.8 48 18 Tu 1 . - CDS 47650 - 48873 359 ## LGG_01544 hypothetical protein - Prom 48996 - 49055 5.8 - Term 50632 - 50668 3.2 49 19 Tu 1 . - CDS 50680 - 51474 343 ## gi|229552345|ref|ZP_04441070.1| hypothetical protein HMPREF0539_1601 - Prom 51540 - 51599 5.4 - Term 51570 - 51608 3.0 50 20 Tu 1 . - CDS 51770 - 52639 533 ## LSEI_1511 hypothetical protein - Prom 52781 - 52840 5.2 + Prom 52740 - 52799 4.5 51 21 Tu 1 . + CDS 52841 - 53116 145 ## 52 22 Op 1 . - CDS 53227 - 53754 237 ## PROTEIN SUPPORTED gi|116511598|ref|YP_808814.1| acetyltransferase - Prom 53789 - 53848 4.4 53 22 Op 2 . - CDS 53850 - 54479 278 ## LC705_01531 hypothetical protein 54 22 Op 3 . - CDS 54460 - 55182 204 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 55 22 Op 4 . - CDS 55187 - 55342 108 ## - Prom 55503 - 55562 4.2 - Term 55612 - 55656 8.2 56 23 Tu 1 . - CDS 55835 - 56146 289 ## LC705_01533 hypothetical protein - Prom 56229 - 56288 2.4 57 24 Op 1 16/0.000 - CDS 56296 - 57111 593 ## COG1381 Recombinational DNA repair protein (RecF pathway) 58 24 Op 2 6/0.000 - CDS 57111 - 58013 875 ## COG1159 GTPase 59 24 Op 3 3/0.000 - CDS 58010 - 58402 427 ## COG0295 Cytidine deaminase 60 24 Op 4 11/0.000 - CDS 58403 - 58801 319 ## COG0818 Diacylglycerol kinase 61 24 Op 5 17/0.000 - CDS 58785 - 59243 530 ## COG0319 Predicted metal-dependent hydrolase 62 24 Op 6 . - CDS 59247 - 60233 965 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase - Prom 60272 - 60331 3.1 Predicted protein(s) >gi|225002513|gb|ACIZ01000066.1| GENE 1 307 - 1242 657 311 aa, chain + ## HITS:1 COG:L7866 KEGG:ns NR:ns ## COG: L7866 COG1577 # Protein_GI_number: 15672386 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Lactococcus lactis # 2 308 5 310 310 210 38.0 3e-54 MKIGTGKSYAKIILIGEHAVVYGEPAIALPVKSIRLLAKVEPIPDGRQEVTSAFFTGDLN AGQLTNFAGIAMLIRQLLVFFNAADQGFHLTITSALPSERGMGSSAATAVAVVRAFYDAF QTSLSHSVLLNWAGISEKALHGNPSGLDAATASAEKPQWFVRGKSLRSIMMPRNGVLLIA DTGIAGQTKIAVDQVAQKLKKDPKTYQPLITDIGYAVRQAALALAQDDIITLGQLLNRDQ ADLAALGVSSPELDRLINVALDNGAYGAKLTGSGMGGCMIALAAADQAPTIIQALKAANA VKVWEYHFETK >gi|225002513|gb|ACIZ01000066.1| GENE 2 1250 - 2254 641 334 aa, chain + ## HITS:1 COG:lin0011 KEGG:ns NR:ns ## COG: lin0011 COG3407 # Protein_GI_number: 16799090 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Listeria innocua # 1 322 17 339 339 251 47.0 2e-66 MTTYARAHTNIALIKYWGKANKQLMLPATSSISLTLNDFYTDTAVTFDPALDQDQFTLNH QMQSPTAVSRFLDHVRHLAQIDTRARVNSLNHVPTAAGLASSASAFAALALATSRAAGLN LTPTALSRLARRGSGSATRSIFGGAVIWHRGSDDQSSFAEPLTIQPTLPLRMLVVTVSDQ KKAVSSRTGMANTVATSPYYQAWVQSNEALISPMITALAENDLTTIGALTELSSMRMHAA IMAEEPPFTYFLPETLRAWQLVQEQRALGIPAFATMDAGPNVKILTTAPYVDVLMTALQP VFGDRILSTRLGPDAQVITKEQFNDTESAITSQG >gi|225002513|gb|ACIZ01000066.1| GENE 3 2220 - 3254 921 344 aa, chain + ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 1 341 1 344 349 282 42.0 8e-76 MTQSQQSHRKDEHVFLAEKYFQATAHAGFDQVRLLHRALPESSLADVDLTPPIPFGWRWP IYINAMTGGSPQTGKLNAQLGQLAQALDLAIASGSQSVALHDPQLAPTFKTLRDHNPDGF ILANIGAGHDQHAAEKAISMLDADALEIHVNAAQEVIMPEGDRDFLWQENIRTIAATASV PVVVKEVGNGFIREDLQTLQQLGIHYVDIGGRGGTNFAVIENARRPHHDFSYLQDWGQTT VESLLEARGLPLTILATGGIRSPLDVIKAQRLGAHAVGISGLVLHHLIQTDYAATLAYFQ EFLQQLRQLYALLGVTNWQALQTAPAVLSPELEHYRHVRHLPAI >gi|225002513|gb|ACIZ01000066.1| GENE 4 3361 - 4692 610 443 aa, chain - ## HITS:1 COG:SP1402_1 KEGG:ns NR:ns ## COG: SP1402_1 COG0144 # Protein_GI_number: 15901256 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 1 290 1 280 280 315 53.0 9e-86 MQLPEAFKEKYTQLLGADASAFLASFDDEPMAGFRRDPAKPWPLDEKTTDPIPWSPWGYY GKVAGNGIDHVSGLVYSQEPSAQFVGTVAAPQKGERVLDLCAAPGGKSTQLASYLGETGL LVSNEINGPRSKVLSGNLERWGSRNILVTNNDPDTLAAAWPQTFDRILVDAPCSGEGMFR KDPDAIQYWHRDYPAECAARQKVILQAAIKMLRPGGSLIYSTCTFSPEEDEQIIAWLLAH YDLTLEPIKKSPGMVAGRPEWADGNPELAKTVRLFPHLVRGEGHFVAKLRLAGELPNEPV KPLKIKPLVKAARDEVTTFFSTSLHKPLTGQFYRHGDFLSLLPKTMIPFDRVKVVRAGLE LGSFRKNRFEPSHSIATALDPADFQTVIEVDADGYARYRHGETLTTSLSGKRFVLLTFEH KPFAIGKLVNGTVKNFYPKGLRV >gi|225002513|gb|ACIZ01000066.1| GENE 5 4679 - 5635 571 318 aa, chain - ## HITS:1 COG:no KEGG:LC705_01517 NR:ns ## KEGG: LC705_01517 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 318 1 318 318 593 100.0 1e-168 MKKLFLIDLLWIGLAILAGLVWSQHDQNEYASQLDHLGMSETAQEYVTKSQRRVTTAVAE LAKTDFSGYQVQFVSKQVVYVYQRGTVASLPVETGQWFSNGDFESSLPVTVVGHDLADKL YTGSNNQRYLSVNDQYVPVLGTVGTRKGSPLNKAVFLNASPNTANGGLRLKQVKVYVDGA NQHGKALKSILRANKVHRVHFSDSNAATWWRAYGQTALFCVLLLLGAGLLSVLMVVLIGP LQTSGLEINMRARYLRGVLSSCASHVGISLLLGGLFANWWFYYTTRASIWGFLIILTIAT VVFLRYLIRRKDRTSATS >gi|225002513|gb|ACIZ01000066.1| GENE 6 5838 - 6581 496 247 aa, chain - ## HITS:1 COG:no KEGG:LC705_01519 NR:ns ## KEGG: LC705_01519 # Name: not_defined # Def: SAM-dependent methyltransferase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 247 1 247 247 483 100.0 1e-135 MAYWTRLLQLAEKYQAISPLKKQIAAMTAWRLALANQQLPQHALPWLGLTTPQIEQALLL PGAKLADLMALDHLLHNFRRYIAFHDGMWSFVHKDFFATWQQLYGRQRYLEVAAGNGYVS AGLRDQGNPTITTDAHTWVAENVTGRQPLVPVKTATANAALFLYAAQVDAVVMAWSPDKD PNDVRFLHIMQRYFPDKQLFVIGERYGATNSRLFWQEAMMVPDRRIFALNRALGHFDAIH ERVYRLQ >gi|225002513|gb|ACIZ01000066.1| GENE 7 6697 - 7047 464 116 aa, chain - ## HITS:1 COG:SPy0783 KEGG:ns NR:ns ## COG: SPy0783 COG2151 # Protein_GI_number: 15674828 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Streptococcus pyogenes M1 GAS # 10 115 8 111 112 117 55.0 4e-27 MANTHDQAATQDQAYFDKMKQQILDALETVIDPELGIDLINLGLIYGVDLDENGKCTVEM TLTTMGCPLTDMLDADIKQALTAIDGIQSVEIHLVWYPAWGPERLSRYAKMALGIH >gi|225002513|gb|ACIZ01000066.1| GENE 8 7081 - 7269 336 62 aa, chain - ## HITS:1 COG:SAS044 KEGG:ns NR:ns ## COG: SAS044 COG1942 # Protein_GI_number: 15926943 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Staphylococcus aureus N315 # 1 61 2 62 62 62 54.0 2e-10 MPLVHIDLIEGRSPEQLKALVKDVTAAIVKDTGAPAEHVHIVLNEMAKNHYSVAGVLEED KK >gi|225002513|gb|ACIZ01000066.1| GENE 9 7828 - 9333 1071 501 aa, chain - ## HITS:1 COG:lin1692 KEGG:ns NR:ns ## COG: lin1692 COG1132 # Protein_GI_number: 16800760 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Listeria innocua # 15 476 22 517 589 71 24.0 3e-12 MLKIRDLFFDNKKLIAALILFSLIQECAPLVIGLIQKRAFDALAKHHGSLFWLTILVFIG VVILINLSRQRYGMLDARITFNTDKTFINKLFAKLPDFGSKHAADLLNVVNVDLPSIDFV ALTITDLCVKFVFLVGSLVILFSYSQTLTVAVIIPLIVVQTVILVAQKYNGVLYGRARKA SLNYFNFMFDLISNNRYMRFLGVLHPEAELDRKNKQQLVSGLKQATYAAFLTNMIAFINM LAIAFTLLIANQTKEISPGTIALFLTYIAPGFDFVTISNQTLELLQRIRFVEAKIAQFFP RKGRDDAGYNQTRDRLKKQFKNSSVVLRGGDILCIEGQNGSGKSRLLRELANEPAKYLNL SAANFKLPDFAVGYLPENPAVFHESLANNMHLFPGFAVGTTPAAKSRSVEKDLLDILGIS ARFHTDTQINASTISTGEKQRIALARAALSSQLLILDRPFDVVDMARGQAILAWLKAHGY TIVLTADQQWVKQQATNLFTV >gi|225002513|gb|ACIZ01000066.1| GENE 10 9317 - 11029 650 570 aa, chain - ## HITS:1 COG:all2623 KEGG:ns NR:ns ## COG: all2623 COG1132 # Protein_GI_number: 17230115 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Nostoc sp. PCC 7120 # 113 559 118 567 586 114 23.0 4e-25 MPKILKSEIASSRGKLTLGLVLLISLALSASAVYAEVFVQRMINGVTVPGSANVLHNFYI YLALGLILLAGRTVFSAFSYVVFLKMTHRVRKGYLNLISFGDEIRDSESFQTGDLNDRLT KDIDQCRLFCQQTLIPVWSDVIQVITIICVLFFQSVLIGAAFTGYLLLSILVLRHVNTSG NDVIPKLRKREAKTADFLQDVFVNNNDVAPMQASSRVIAWFNKQYDKLLPLELHAQSFIY RSWIAALVLIAFLEVTSLALGGYSFLRGVIGLGTVYMMIDYATRIQAPLESMQFHANNVQ YLKGAFANLAELERKFVMQSGNSPYPTKPTIRLHISNLRNFDHQVLKKVDMAIAPGQIIG LSGVSGSGKSTLAKAIVGLQHQYEGQIDYSKTPISKISASEMGANVAYVSVDQSLFHVSI EKSLQGFSVNNATQNVWQRLEQLGVSKARLDYLRTTLSAQVGEDGANIDKLADGDRQLLL ILRALLQEKDLIILDETLSSLDTARFAEVSRLLRHYVDTFKIKMILISHKTNRLHFADHV YGITKGECVYFSKLADWASTYEDEQNVKNS >gi|225002513|gb|ACIZ01000066.1| GENE 11 11405 - 12199 886 264 aa, chain - ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 6 261 5 262 265 213 40.0 3e-55 MTTGKDIINRFEDYAPLSLAMERDPSGLQLGNPDRPVKTVLVTLDVRPEVVAEAETVHAD MIFSHHPAMFHSVHNLDLRVPQNAMYAQILKDDLLVYSAHTNLDRVQEGMNDWLADALGL TQVVPFINEGEGANMGRIGLLPESIRLEAFIEQVKAAYHVKGLRVVARDLERPVRKVAIL GGDGGDAFNDAKAAGADVFITGDVYYHTAHDMLAADLPVIDPGHHIEAIMKGKVAGLINE WAVAEGWDVKAIPSKLSTDPFTFM >gi|225002513|gb|ACIZ01000066.1| GENE 12 12186 - 12896 593 236 aa, chain - ## HITS:1 COG:SP1610 KEGG:ns NR:ns ## COG: SP1610 COG2384 # Protein_GI_number: 15901450 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 6 202 2 196 225 167 44.0 1e-41 MDHIHLSKRLQAIRAFIEPNERLADIGTDHAFLPIDLVQRGIIKFAVASDIGAGPVAIAK QNVADAGLTDQISVRQADGLAGIHPADAISTIVIAGMGGQLITNILEAGQPQLDGTETLV LAPNRHQYDVRLWLDKHGYGIIGEQIIEDEGHIYEMMAAGKTRPDVPYSEADLRFGPILR RQKSPTFMKKMHREAEKTEAVLEGLADAKMVPLAKIREQEHLLALIKEELSAHDNR >gi|225002513|gb|ACIZ01000066.1| GENE 13 13085 - 14335 1361 416 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 63 416 21 374 374 484 78.0 1e-136 MADKKTATEVSKTTKKTTAAASTKAATESKAATKKTATKKTTAKKTTASKSHTTTKAYDD AVKAVIKDYKKKKQITEDDLTSKLIKPFELKSTAIDDLMQKIEDNGIAIVDENGEPATIS LKKQKKVSKKEMSDMSAPSGVKINDPVRMYLKEIGRVSLLTADEEVALALKIEQGDQEAK QRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIR QAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVRE ILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREE NVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE >gi|225002513|gb|ACIZ01000066.1| GENE 14 14349 - 16118 1265 589 aa, chain - ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 2 588 4 624 626 396 36.0 1e-110 MIPEATVDQVLKAVNIADYIGQYVQLRKTGQNLFGLCPFHEEHTPSFSVNESKQIFHCFS CGRGGNVFKFVMDYDNATFPEAVKKVADFAGIPLDVQVGQAAPVDPEVAKQQHILQDTAD LYHHILVNTEKGEAALAYLHKRGLTDETIEEFKLGYAPEERNLLVAFLNNRHVEYQDQRA SGLFVEDQAGKLFDRFNDRVMFPLTDANGKVVGFSGRILQSDKSQAKYLNSPETKLFNKR DILFNLHRAKAEFGRDGGPILFEGYMDVIAAYQAGVKTGIASMGTSLTTEQVDIISHLSK RLTVCYDGDEPGQKAIERAVTMLADHPRLQTDVVVLPDGMDPDEYIRARGAEAFQAQVKS VLTPTAFMLQFLARGVDMHNDQAKLTYLNAALRIIGKISDPVARAVYVKQLAETTEVPIA ALNQSLPSPQTRRPAAAQPPIADQPVRPLDRYTAAQRQLLYYVWHDDLVMQRLKNATFVF PTPYFQTLFTGWLRFLHEQPDGELAGFLDRVDPELSGVAADVAMQSLPEASEATIDELIQ TITSASTVSRLQAIKQAITEAQRLGDKQKQGELTVQYVNLMKLLKQQQG >gi|225002513|gb|ACIZ01000066.1| GENE 15 16304 - 18373 2054 689 aa, chain - ## HITS:1 COG:L0360 KEGG:ns NR:ns ## COG: L0360 COG0751 # Protein_GI_number: 15673078 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Lactococcus lactis # 4 689 3 673 673 619 48.0 1e-177 MTHDYLIEIGLEDMPAHVVTPSINQFHDKTVAFLKANHLEHGQIDRYATPRRLALLVHDL AAKQADVETDVKGPAKKIAQDADGNWTKAAIGFSRSQGMTPDDIVFKTIKGVDYVYLHKA IKGKEAAEILPGMLDVIKGLTFPTRMKWGAYDFEYIRPIHWLVSLLDDTVVPMKLLDVEA GRVTQGHRFLGKPVTLPNADAYVAALKDQFVIVEPAARKQLIREQIEQIATDHQWQIELD SDLLEEVNNLVEWPTAFAGTFDPKYLAIPEAVLITSMKDNQRYFYARDQAGKMVNAFIGV RNGNHDHLNNVIAGNEKVLTARLEDAAFFYAEDQKRSIAEDVERLKAVSFHDKISSMYDK MARTKVIAALLADQFGLTADEKADLDRAASIYKFDLVTSMVGEFPELQGIMGEHYAQLAG EKPAVAQAIAEHYEPIAADGALPQSLVGTVLAIADKLDSLMSFFAVDLIPSGSNDPYALR RQAYGIVRMIAEHDWPFALASLQPTIAKALAEADQTNGLDFAAHQQELNDFMIDRAKQLL QGQKIRHDIVDAVTVRSDADIAGILDAAKLLTQHAADSDFKPVMGALGRVLRITGKQTVT TAVDPTKFENPTEGQLHDAVTTTAKTFAAEPTEADYQALKALAKPIDAYFDATMVMADDK AVRENRLATLQQLAQLIRQFGDVSQVIVK >gi|225002513|gb|ACIZ01000066.1| GENE 16 18375 - 19244 714 289 aa, chain - ## HITS:1 COG:SP1475 KEGG:ns NR:ns ## COG: SP1475 COG0752 # Protein_GI_number: 15901325 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 289 10 298 305 489 77.0 1e-138 MIQTLQKFWGDKGCMLMQAYDVEKGAGTMSPYTFLRAIGPEPWNAAYVEPSRRPADGRYG ENPNRLFQHHQFQVVMKPSPENIQDYYLDSLAALGINPLEHDIRFVEDNWENPSMGCAGV GWEVWLDGMEVSQFTYFQVVGGLEVSPVTSEITYGVERLASYIQDVNSVFDLEWGDGVLY GDIFKEPEYEHSKYAFEVSDQAMLLKFFDAYEKEAWRLMDLGLVHPAYDYILKCSHTFNL LDARGAVSVTERAGYMSRIRKMAHKVARAFVAERKKLGFPLLQHKTEVQ >gi|225002513|gb|ACIZ01000066.1| GENE 17 19342 - 19458 60 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVVNVIGVFEPNDKAAGRFGLSEVGWNRAEASLRHILA >gi|225002513|gb|ACIZ01000066.1| GENE 18 19679 - 20848 293 389 aa, chain - ## HITS:1 COG:L55605 KEGG:ns NR:ns ## COG: L55605 COG0582 # Protein_GI_number: 15673415 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 4 384 3 357 359 167 29.0 3e-41 MASIRSYKLDSGKRRWKVSVYVGIDPKTGRKKYVVKGGKLTRQDAIKAGRDLEKAVQNGE LTVAPRPDKVARKFNDVYEEWLKSYKLTVRESSWSKTRDCFNLHILPDLGDMYIDKITPQ DVQAAVNKWFKQSPVAFKRYFVHINRILTYAELRDYIPHNPARRIILPRVQDKIGSTNDF WDRRQLEVFFNCINPDRELYKYVLFRILAYAGLRIGEAMALEWEDIDFKKRLISVNKTVS LGVHGKLIVNPPKTRASRRDVPVDSETINWLKRWRIEQPDYVYGYVRLSTHHQLLFTTKT GNRFRVDKPRMWLSTIIRNNNLAPVISLHKFRKSYISNLLIAGVAVSTVQKMVGHTDPRI TLQIYARVHQEQEVEAAEKLAKYLKTGKK >gi|225002513|gb|ACIZ01000066.1| GENE 19 20891 - 21211 288 106 aa, chain - ## HITS:1 COG:no KEGG:LSEI_1506 NR:ns ## KEGG: LSEI_1506 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.casei # Pathway: not_defined # 1 106 1 106 106 157 98.0 1e-37 MLLSGEQIKQLRNARRMSQVDLSRATGLSASLISSYEAGTRNVTQEASDKIAIAFNGISP INPAERTQTADLDDDKTLVKMNGIPLMPAEKALLKALAKAMLDQRK >gi|225002513|gb|ACIZ01000066.1| GENE 20 21339 - 21485 73 48 aa, chain + ## HITS:1 COG:no KEGG:LSEI_1507 NR:ns ## KEGG: LSEI_1507 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 48 1 48 48 82 91.0 5e-15 MIDIFIWLMSHQITLAALCFATLVGIFIGALIQFLEDNKKATPHANAK >gi|225002513|gb|ACIZ01000066.1| GENE 21 21498 - 21782 56 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229552315|ref|ZP_04441040.1| ## NR: gi|229552315|ref|ZP_04441040.1| hypothetical protein HMPREF0539_1571 [Lactobacillus rhamnosus LMS2-1] # 1 94 1 94 94 193 100.0 2e-48 MTSQLVKAVKTFHPYPLPFKVRKVVDTKDLTIGNLTGISYRLDFIASAPADHLALFQPCA GMLWHEHNNHDTLILSLLDNQYIDPLAWVDCFGY >gi|225002513|gb|ACIZ01000066.1| GENE 22 22199 - 23314 899 371 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 16 212 152 344 444 142 40.0 8e-34 MAAFSFALPTHVKAAKNDIGVDWSVYQGTNGKTVESDRFAISQIGGTQGGTIYNQSTYSS QIKAANDDGLRVHSYLWYGVGGSSDIGRQALDYFLPRIQTPKGSIVALDYEDGASESVEA NTDAIIYGMQRIAQAGYTPMLYSYKPYIVAHVDYNRVLSQFPNSIWVAGYPDYQIRALPL YSYFPSLPGVAIWQFTSMHAVGGLDGNVDLLGITDNGYSKQPAQATTVPSTPSQASTSSD TDYAQNGIFRPSVTLNIRTGDDTSYASIGTYAPGESLMYDHVYIHNGHVWAGYLSYSGRY HYICLGIMGGESYGSRSSSYSAPSHTYYTVRSGDSFWSIASKYGISMYTLAANNGKSIYS LIYPGESLYIR >gi|225002513|gb|ACIZ01000066.1| GENE 23 23359 - 23691 437 110 aa, chain - ## HITS:1 COG:no KEGG:LGG_01520 NR:ns ## KEGG: LGG_01520 # Name: not_defined # Def: phage-related holin # Organism: L.rhamnosus # Pathway: not_defined # 1 110 1 110 110 143 98.0 2e-33 MKDLIVQIAIAVIPILGAWVAKVLLANKQALTLVQVLEPLAQAAVTAAEQLGVTQAITGT VKKSQAVASVETQLKAMGFTKVDQQTVENAVEKAYSDLKNTIEATYPKGA >gi|225002513|gb|ACIZ01000066.1| GENE 24 23704 - 23919 226 71 aa, chain - ## HITS:1 COG:no KEGG:LGG_01521 NR:ns ## KEGG: LGG_01521 # Name: not_defined # Def: phage-related holin # Organism: L.rhamnosus # Pathway: not_defined # 1 71 7 77 77 126 97.0 2e-28 MLMEIKEDIAQIKQQLTGLPSTDDKADKAYNASQDNARDISSLKKMVWSIWGVLGGMIGI TLFVYIIEKFL >gi|225002513|gb|ACIZ01000066.1| GENE 25 24086 - 24376 228 96 aa, chain - ## HITS:1 COG:no KEGG:LC705_00887 NR:ns ## KEGG: LC705_00887 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 90 1 89 95 83 47.0 2e-15 MKIKVWTDTNNRLLNWANADESRSVGPTDEGFEVIEVADAVGLYENHASIIDGQVLPDAG YDPDAARPTPEPSPEQQMIAALTLEVAQLKAAKSSD >gi|225002513|gb|ACIZ01000066.1| GENE 26 24394 - 27390 2032 998 aa, chain - ## HITS:1 COG:no KEGG:LCABL_13420 NR:ns ## KEGG: LCABL_13420 # Name: ps457 # Def: hypothetical serine/threonine-rich protein P11E10.02c in chromosome I # Organism: L.casei_BL23 # Pathway: not_defined # 2 823 3 873 1039 762 52.0 0 MEYYFSDRKFNIMGIARTTGKGEWRVSADSEVKTTDDRPAIALTLTIPFKTEQEQAIDEM AAENNFVLYQDEEGNGHQMVIASVTHDTLAHIHTVVCTDAGNDLMNEVVGAYTADKSYTI ADYITRFTNDSGWEIGINEFPTDVRTLTWTDEDTSLSRIKSVAKDFDAVLSFGFVFVGTT AVKRVINIKHEETSDSLISFEMNKDINNIVKTVDIYDMETSVKAYGATPDGSNDPINLIG YSWTDPTGQFVLDQYGFLHDTIAVQKYSRLLSNDNPNPTQSDWNRVKTFESTTQATLLQA ALADLKKYNHPNVNYEVDLANAPYVPLNQTVHVVDENQNLFLSAKVLSVERSRAGHYTKL TLGDYANEQPNLYSALKDMAVKIENIPKAIQFYPWIRYADDDKGTNMSALPAGKKYMAIV WSNKSSVPSDNPADYAGKWALIQGKDGADGVPGAKGADGRTSYFHTAWADDVSGQSGFTV SGGDGKKYIGTYSDFTQADSTNPADYNWALFKGADGATGPQGPQGPQGQQGPKGDQGLPG AKGADGRTAYAHFAYANSQDGNTDFSTTDSNRKYIGFYSDFTSGDSTNPSDYRWSLIKGA DGADGKDGVPGKAGADGKTPYFHIAYADSSDGKTNFSLDTPGSRKYIGSYTDFTQADSTD PSLYSWQLVQGPQGDTGPQGPQGPQGPQGPQGPQGVPGSKDVPYTYIQLGTPAGPKKGDL WWHGTTLNDATALQYYDGLTWIDQSIQQAVLSIKKLQSIEIDSATINSPDINAPFSHTAL SDANVGKFSSGNTNMQYGHVNVTGNVENDQGTADGHLLISDLGPSGFISRERTPDNAGDV QYANLQGGKLYLSTLISAENAATKKYVFSTFKSTDNVTFFYVNTSALSNIDIDWAYIYYT RRGNLVTANFQIHTIANQYNFLRLADIRPGYKPYLTNNIVASCLSFSDPGQSTAMYSSTP SGGTVGWYSNISKASGSYGGSVSYLTQDDYPTGDSFFD >gi|225002513|gb|ACIZ01000066.1| GENE 27 27391 - 29469 966 692 aa, chain - ## HITS:1 COG:no KEGG:LGG_01524 NR:ns ## KEGG: LGG_01524 # Name: not_defined # Def: phage-related tail component # Organism: L.rhamnosus # Pathway: not_defined # 1 692 1 685 685 582 48.0 1e-164 MKQAGVTITYAGVDITQWLYVQMVKRDVGTNHVNTMQKVGISDGQMLQYMSRDVKTIVVT GIVMNDDLVPLRRSLAAAIDANEPQQLIFGDEPDKYYLAIVDSQPTFTEGFRSGTISISF ICPDGGITHSVATQTADNMPYNDLPVNMLVDSGFESGQTPANHVWGDGKDTNDRIFQVTG QVPSFPTPFGNYMLRIENDSTDSSLNPDQYVQIPLSEPVYIKKGETWTYSYYYATAGSAV GQASDYLLTTEPDPLFALSMGHDARDASGGQTTWHRFVKTWTADKDVTVTTLRFGFTKTS VSAGWVCIDDIKLEQEPAVSPWSPNPADPEYYTNTITVHNGGTYPVEPVITATMHADNGF LGFANSQGGVLEFGNPEEVDGYTSEESEVALNLAAVQGSHMDNQAASNNLYWGDNPATPN EQIGNAIWTQDSYDGWKVKPNWSSITGTHLYWNGPSIKHNLAQTHNGNFTSNLTWDVMTR FQTGVSKVGSLETTLESDGKPIFQMILKDNSALSDQIWWICYYKNQLVVNEQLDRNIFTN DKFIQLELQKFGNSVVFRVSPWVGNRGRETTITRQFTFADAADVETKQFSTWFMRDKTWG ESTMYLIASTVKWQNVSWYTDIKNRFSNGDVITVDVANTKTYFNGSEDRTLHTLGNQWDK FLLPPGDTTIQLMPSSWAQQFACEVDLKEAWL >gi|225002513|gb|ACIZ01000066.1| GENE 28 29470 - 33699 2338 1409 aa, chain - ## HITS:1 COG:L72137_1 KEGG:ns NR:ns ## COG: L72137_1 COG5283 # Protein_GI_number: 15672461 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Lactococcus lactis # 3 842 16 865 1076 299 27.0 3e-80 MAQQINATMSTKIALDLLSASESVKSLTAVVRSSQNAWKAQEAEMKSAGDAVGAAQAKYD GLGKSIESQQAKIDALKAKQSELKGNTADVAQQFLKYQQKIDGATKQLASMQAQQDRAKQ AMDYQKSGLAGLQQEYTAAARANQAYVTRLEAEGNQQEANKAKMEGYKSSITNLNEQLSK QSAELDKIASASGKDSDAWRTQKTRVDETATSLAKAKSSMTGLKTEMDKANPSVFDRIKL HITGTKDEADKTTFSFKKMVGATALGHGIMNAWTSFSGSIKETVTQGVKLAEAGEQATRV WETLGVSDKGAEQLVGQMRDLKSETNMSADQVSVLQKRFYGMTGNVDKTKALTLGVATLS DKLRLSGDGASTFAKSLQRAFNNGKLTTGVLTRMENAAPGLGSALAKASGVSETAFNKMV DSGQISSKKLQDMIVKIGGDSKATFNDFGNTAEGATQRLKGAWQGVEATLAKPLVSVQST GINSIVNVLKSSAVTSLFTSLGKAMAGVAQQASNLLNYVAQHQKDIGGIITSLGTIVKIF AGTVWHTIAGIVSGIAKSFGLMGSGASKANDPLKNANTALSNIAKNKSGIQTTAKVMLAM WAAMKIGKVAITGLSTAVDIYAKRADIMAVSQKALNLVVKASPWVALATVIISVGTALFE LYKHNAKFKAFVDGIVKSVQNMWKGMEKWISQMVKGWNSAWSSVGKGWNSFLKTMNGWGK SIASAWNKIWAPIVKGMSAVWAGVVKATKVGLNVLKLAIVIPIALIVGLAIKAWQGIEKP FMAVWNGIAKFIKPILTSISNFITGTAKDVSSTWNKYWQFVAKFFTGIWDTIVKVGTTAF NTVSKGISSFLSAVNKVWTDSWNAISKFFSSIWNGMVKFLTPIINGISSAISNVINAIKN TWNTVWGAISDFFGNIWNGMVKFFTPIIHGMSDTIGSVIKNIKNVWTDVWGGVGSFFSGI WDGIKKAAQSGINFVIDVIRTGLGAVNGVLGFFGVKKVDLPSHVHFAQGGEMSPNGTRLA MVNDDGSEHYKELIHKKRTGQWLYTDKKNAILPLETGDRVYNGKESKAIATMYGIPGFAQ GGIIGDLWGGVKDASSWVVNKAEDVGKWIGDKFEAIVDWIAHPVKHVTDLISNSIKGIVS SSPVKAFGDLGVGIFKHAYIGIGAWIKKELKKIEDSMGNPGGSGVQRWKPYVIKALKANG FDASDYQVAAWMRVIQRESNGNPKAINLWDSNAKAGIPSMGLVQTIGPTFNAYKFPGHND VYNGYDDLLAGIHYMKAIYGSGSSAFARVSGPEGYANGGLITQPIHALVGEDGPETILPL TKTSRAWQLLGQAVTNINHNLGNGSVAESESNGTDDLGKKLDNIADLLTKLSFVLQIGDD QFYPKVAPKVKQYNDRTDRFNAYWKGGTV >gi|225002513|gb|ACIZ01000066.1| GENE 29 33701 - 33859 221 52 aa, chain - ## HITS:1 COG:no KEGG:LGG_01526 NR:ns ## KEGG: LGG_01526 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 7 51 1 45 45 66 97.0 3e-10 MKKQAVMYFHWSMQDFDDADYFEMLEMMSAKDKKDRPIDPAIMWKQYQEKGD >gi|225002513|gb|ACIZ01000066.1| GENE 30 33912 - 34262 414 116 aa, chain - ## HITS:1 COG:no KEGG:LGG_01527 NR:ns ## KEGG: LGG_01527 # Name: not_defined # Def: phage-related tail component # Organism: L.rhamnosus # Pathway: not_defined # 1 116 1 116 116 165 93.0 4e-40 MKIKVTAISNRVHEVKTTNRNMEKMYDLQLLMAKADDVADMEPVEIIKVQRDMLHDSIDF LTTVLNLNKQETEKLGDLEFSDTIQAVNYTFERMMGMSDEDIDLAAKKQDASKSKD >gi|225002513|gb|ACIZ01000066.1| GENE 31 34419 - 35075 633 218 aa, chain - ## HITS:1 COG:no KEGG:LGG_01528 NR:ns ## KEGG: LGG_01528 # Name: not_defined # Def: phage-related major tail protein # Organism: L.rhamnosus # Pathway: not_defined # 1 207 1 207 211 332 92.0 6e-90 MATVGLYQIQLALVDGQQKLISGTGAGLGTDGIYTVDHKDLGVKTAKITGLAGTIAKIYG NNNVQDVTVGTSEPTVALDINNLDFAIKQQIKGFVSDSKGGYTDENLKAHVALLITTQTI DRLHFVYYGFGDGIMTETAADIQTDAAAEQRSDDALTYTALSTIAFDNQPYKIYSDLDSK FDKANMYKETFGGYVLPAGSTGSGTTTTPAGSTATSGK >gi|225002513|gb|ACIZ01000066.1| GENE 32 35076 - 35456 244 126 aa, chain - ## HITS:1 COG:no KEGG:LGG_01529 NR:ns ## KEGG: LGG_01529 # Name: not_defined # Def: phage-related tail component # Organism: L.rhamnosus # Pathway: not_defined # 1 126 1 126 126 217 92.0 1e-55 MSAVDDAVAMLSQASIAGIDAVEGNNLPQELVDSLNKTVVLITDAANDPTAYGNNDFWAL NQEVEVQIWYSQLLDSDPETIEIAMMKAFTHQHWQVAAVRQRTLDPDTQQLFNTFYFSRT KNIGGI >gi|225002513|gb|ACIZ01000066.1| GENE 33 35453 - 35872 450 139 aa, chain - ## HITS:1 COG:no KEGG:LGG_01530 NR:ns ## KEGG: LGG_01530 # Name: not_defined # Def: phage-related head-tail joining protein # Organism: L.rhamnosus # Pathway: not_defined # 1 139 1 139 139 192 87.0 4e-48 MDMDDALEEWLKQVSKAAKLSINDQEKITKAGADVYAKKLAETTKEKHPNTKGTGGKYGH LSEDISGKKGDIDGDHNGSSTVGFGDKAFVARFLNDGTKKIHGDHFVDNARDDAKDAVFA AEAEKYEAIIAKLNGGGDK >gi|225002513|gb|ACIZ01000066.1| GENE 34 35875 - 36219 257 114 aa, chain - ## HITS:1 COG:no KEGG:LGG_01531 NR:ns ## KEGG: LGG_01531 # Name: not_defined # Def: phage-related infection protein # Organism: L.rhamnosus # Pathway: not_defined # 55 114 1 60 60 104 95.0 1e-21 MVSSFKPSDFSHTAELGSSQSHRTGAGINITSFVPNYSLHYKQQKRTLTQQYTLIGTRLD NSITIIVRHDARNIEQKQARLDGIVYDISDISPDDSNNAIRYDYLTLTKVTKGA >gi|225002513|gb|ACIZ01000066.1| GENE 35 36209 - 36499 275 96 aa, chain - ## HITS:1 COG:no KEGG:LGG_01532 NR:ns ## KEGG: LGG_01532 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 96 1 96 96 144 88.0 9e-34 MAETVVDPNKIASDLMVELNLDESELPTITSLVNTAISIINRSSDAPEDDTLTIPAIKTL TQATYYDRGLANGMPNGLLMMLAHLQASRGGDNNGK >gi|225002513|gb|ACIZ01000066.1| GENE 36 36571 - 38499 1042 642 aa, chain - ## HITS:1 COG:L112195 KEGG:ns NR:ns ## COG: L112195 COG3740 # Protein_GI_number: 15672503 # Func_class: R General function prediction only # Function: Phage head maturation protease # Organism: Lactococcus lactis # 36 199 30 187 196 144 48.0 4e-34 MKNEDIRTFNVQIRAETAIDSQSSNNQVESNPNMAISGIATVFNQPSIKGNFTEYIDQNA LNDVDLSNVLLLYSHDFSNILARADAGTLSTSIKSDGLHFSAQLPDTQLGRDTYTNILNG NIRGMSFGFTISDGGDGWSVDGQGNTVHTIHKIDQVFELSLTPIPAYTETSVQVQRDLAQ FLSNKKEDVKMAEKPKEKVETQSRDEQMRSLKKFKEQLSDLEKKINTNVVIDQPADKEEQ RDAAPVAPAQAPTPSAPTPKDDGTTAKSPSDDLASMITSLQAAIQSLSKQLEAKQAPMQD DDGSDDSDDVELNQSKPAEQTAKQATEQNVEPNENKRDGAKSMSKNLTADKVEDEAVRDF KEFLKTGEIKRDSAGFDSTAGEAVLPSQVLDIMSQPKDPAQLGGYVTKVQVSAPTGKIPV LSKASAQLVSAAELADNPKLANASLTQVNYDVQTLRGSLPISLEMTQDYPNITSLLTQYI NDIKDQTEQHKIGAVLQTATPVAAASIDDIKDAFNVGLSNYTDRMFVVSESFFAAIDKQK DAEGRYLLQDSITSPSGKQLFGAPLVVVADDVLGKSGDAKAFIGSVKNFVVETIKGNINL SWQRNENFEQVLLAALRADFKAADTAAGKFITYKVPTATPGK >gi|225002513|gb|ACIZ01000066.1| GENE 37 38499 - 39218 309 239 aa, chain - ## HITS:1 COG:L66478 KEGG:ns NR:ns ## COG: L66478 COG4695 # Protein_GI_number: 15672452 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 8 239 129 359 359 185 43.0 8e-47 MADSSADISYAVNWADERGTINYPSANMLHFRLMASGANGQQYIGISPLESISSQVNIQD YANKLTLSTIKNAINPSTVIKVAEGALSPEEKEQTRKAFENANTGDNAGRPLVLDQLYDV QNLAINADVSKFLSSNDWSKTQIGKVFGVPDSYLNGQGDQQSSLDMTKSLYSNTLRRYVK PIESEMGAKFGVPVNIDESSAVDANNDLLIGQIQKLLSGTTPAITPLQAQQILAKRGVI >gi|225002513|gb|ACIZ01000066.1| GENE 38 39855 - 41756 719 633 aa, chain - ## HITS:1 COG:L37002 KEGG:ns NR:ns ## COG: L37002 COG4626 # Protein_GI_number: 15673381 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Lactococcus lactis # 27 613 38 622 657 400 39.0 1e-111 MVKQFDLTQPNMTVDKAYKMQRDDGIYDAIADRYRDPGTVYAFQVLEGGILAGRDIKLQA FRHLQDLARAENSQDDFPFHYSLDKCREVLGFASLCPDPSTGRPLPLAAWQKALLCWSQG WRNENDERRFHRVIFSVARTNGKTYLTVILLSYQYLIASAHFENQDMAYIAPVSQQSKKG WRYVKTTFNRLRHNQFGDWMRKNKVKIGEEAVRSNTSQNQLLRLSDESGQFDSYHLAFSV HDECGDDGRIGLIKENNGKITSGQVQTFDSQSWNISTAYPNSTSSLFLDEKMLRNSMMHD DQRKLDDNLLVNYTQDSEDEVNNPEKWIKSNPLLPTAGKTMLDSMISERDTKKNDGSIGE FVNKNLNCWLTVKENCFLNVHDIKGAVVKQPPIDIHGKVCYIGIDLSKLSDDTAIAFVFP YQLQNETHYWVVQHSWIPLNHSSGSIQQKEKQDGINYRSAQEQGYCDIARNRWGYIDDDS VVTWLADFIETNSLQVKFICYDPWASSDVLDKLVQIDRWLMMPIRQTAHDLDRPTHELQK AFREGRIHYYDDPIIQYSLSNAILVGNSAGLKVDKERYTSKIDCVDAIVDAMSRAVYEFS DVNPDFDPKAKVKDPLSGMSDEERHNFLMNVSF >gi|225002513|gb|ACIZ01000066.1| GENE 39 41756 - 42235 165 159 aa, chain - ## HITS:1 COG:L38962 KEGG:ns NR:ns ## COG: L38962 COG3747 # Protein_GI_number: 15673382 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Lactococcus lactis # 28 159 5 157 157 66 31.0 2e-11 MVGRKPKITTNDSDRADQRRRTEELIDKTKDLNKLQERAPKHLSGVARSTWETLVPQLNH QHLVKAIDKNVMTALCEQVQIERWAYEAIEEKGVVLDSGRKNPACQVLDSATAKVKSLAE SLGLSPAARASLMNIQPDNDDGSTDDIAAELVKKGDEQF >gi|225002513|gb|ACIZ01000066.1| GENE 40 42694 - 43776 418 360 aa, chain - ## HITS:1 COG:SPy0676 KEGG:ns NR:ns ## COG: SPy0676 COG0286 # Protein_GI_number: 15674741 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 13 234 5 205 211 179 42.0 1e-44 MTDRYFETDKGQETIAKLLHGDDLASTSGYLMHILFDKDKRERLFRQFLTYETDVSYDWF NLYYSQEMTRVSKKTKSFYSPPALGKLAKQLVDVARTDGDTEATKRNLGATNYDVGAGTG QLTVTAWDANRRKHSPFSYKPSMYFYVAEELKEAGKPSRSIPFLLFNYLIRGMDGVVIAG DSLSRSISQVYFIQQPEDDHLGFSSLNVMPRTPDTMKAFDVRAWIDKPIEHIEDKDIMPQ FIVDKLTGNKRQPEQAGEDKQLGIYKKRLNVIRNMTKGNADDKEYDGKLTESDKALVDFF DTLMPGFAQFEAEKNEERMRQHLANKRQEESTQSQHRGNKRQHRASIEATRDNTERHKRQ >gi|225002513|gb|ACIZ01000066.1| GENE 41 43773 - 44060 134 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229552337|ref|ZP_04441062.1| ## NR: gi|229552337|ref|ZP_04441062.1| hypothetical protein HMPREF0539_1593 [Lactobacillus rhamnosus LMS2-1] # 1 95 77 171 171 192 100.0 5e-48 MDRLVRPSELDHGDYYWKGVRQILRDFNSKVTSSAAQASYKDIEIECDSLLTNELTKQLF KSGWLSTVHDPGNGMVTIVVNVHESILKQRWEDMG >gi|225002513|gb|ACIZ01000066.1| GENE 42 44465 - 44995 156 176 aa, chain - ## HITS:1 COG:L63293 KEGG:ns NR:ns ## COG: L63293 COG1403 # Protein_GI_number: 15672449 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Lactococcus lactis # 10 175 24 189 189 94 36.0 7e-20 MSYHSKHRQQVHECGEPLCHAIVPISERYCAKHQSQHEAEWQAKKDAYHKSKLARAIKAQ QAKQYDQTERDPESVAFYHSKQWQAVRDYVYARDLATCQSCGNVVQDRKIIDHIIPRRLC SPQEALDSANLWTLCYRCHYRKTKLEQIISQQPSGDNKLKHLGKKWWTKVLKEKKQ >gi|225002513|gb|ACIZ01000066.1| GENE 43 44979 - 45392 360 137 aa, chain - ## HITS:1 COG:L0301 KEGG:ns NR:ns ## COG: L0301 COG0629 # Protein_GI_number: 15673403 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 137 2 141 141 65 30.0 3e-11 MNNYSAIGIIAMSPKKGNGVLSSLLAIKRIYKSNDNKTADFIPFTIFGKQADNFDQLTSK GYKIGIDGRIKTSTYTNEQGQTEHGWSVVIDHFYLLSTKPHNASEKLSDATINVLNSQLS AASKQAKVTVSDNELPF >gi|225002513|gb|ACIZ01000066.1| GENE 44 45385 - 46068 313 227 aa, chain - ## HITS:1 COG:no KEGG:LGG_01542 NR:ns ## KEGG: LGG_01542 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 225 29 252 255 281 68.0 9e-75 MSRRDASQELLLELMFHRLHSWSDKDVRLAVQRDLPSLKWRIKYARKDIVRKEAKLNSRE LEKAQMLAGMEPQASNQAETLEALERLPELFKNANTRTWCGSILRVGKRQTMMNFNQTPR QFNCKLNKVCRYARQHQQPKQSNSHAKELHILSEWNDLMAHQDTSDNDIQAFINSHQDYI NEIINSPQVAYQGRLIKDFAHAGKDKYILLNLMTAREQELDRRTNHE >gi|225002513|gb|ACIZ01000066.1| GENE 45 46152 - 46370 175 72 aa, chain - ## HITS:1 COG:no KEGG:LGG_01543 NR:ns ## KEGG: LGG_01543 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 68 1 68 68 75 75.0 4e-13 MKNKEITIDVFSILTSAGWFLTISNVAGITQLSWTAILNYWLTLLGIGLIMGIVTATIGL WTSKGGDKGGEK >gi|225002513|gb|ACIZ01000066.1| GENE 46 46430 - 47032 266 200 aa, chain - ## HITS:1 COG:no KEGG:SDEG_1118 NR:ns ## KEGG: SDEG_1118 # Name: not_defined # Def: putative endodeoxyribonuclease (EC:3.1.-.-) # Organism: S.dysgalactiae # Pathway: not_defined # 48 133 11 95 186 63 41.0 6e-09 MENTINYMQTNLNLEHLIKATIKIHIAARVKAHDEEEFKRCPAPYSRYKVSRKGIVVGNR YKRPIKLYINSCGYVVLSVTKDGLNKHTTVTLSRLLALAWISNPEHLSDVDHIDNNRLNN DLSNLRWVSHRENLVKDHRRQLMKRANGRPIKKLNDDGSYMVYNSIKEAAELNHLSNTSV AGSANHTLHLNKPYHFIFAK >gi|225002513|gb|ACIZ01000066.1| GENE 47 47317 - 47541 157 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229552343|ref|ZP_04441068.1| ## NR: gi|229552343|ref|ZP_04441068.1| hypothetical protein HMPREF0539_1599 [Lactobacillus rhamnosus LMS2-1] # 1 74 1 74 74 118 100.0 1e-25 MSIYDQSKKIVEKIREAYHGKLPITVNLEELNLSADVKTRIMLQNASLNAVKESDVSTTI TPTPDGKVKDVTIE >gi|225002513|gb|ACIZ01000066.1| GENE 48 47650 - 48873 359 407 aa, chain - ## HITS:1 COG:no KEGG:LGG_01544 NR:ns ## KEGG: LGG_01544 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 407 1 409 412 624 76.0 1e-177 MGYKNKELLTNWANNVDKVAELTKHSTTRTTRKTRLSELLNTVSTGKIVGATEHKIDGKK MLSIHKLTTNVVPAFIECLGSPTQLPVFLKMFYPEMLQRKDYKQACSVAESNILQMPSGR GSGASQEVKNLFVPVNKYDPYRSSKQLMADAWQAINLIASNQVTGHQLSLEPGRGIYVTK DLIMDMLEHPEKATKTKVANALVLMRVAGAIHLAQPDELTDEGKKLTKVNNQGKLVNSHN VYILGEFNTANWKLVSDNFNLNLNTPISKALLIELFGEQVARDYFPDLSGGVSKSGIDFF MALKAQKGYTNEPIMTAKAAADTISSLASVKDRTSRQWVDQICNVKPIEMEKMSKSEAKR LGYVLGGYKDTRSAEKLIVPTTREALRMCLEKLADKNDSLKVKARMR >gi|225002513|gb|ACIZ01000066.1| GENE 49 50680 - 51474 343 264 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229552345|ref|ZP_04441070.1| ## NR: gi|229552345|ref|ZP_04441070.1| hypothetical protein HMPREF0539_1601 [Lactobacillus rhamnosus LMS2-1] # 1 264 40 303 303 492 100.0 1e-137 MQGHVVFGTAKEGYGVIFYLTESDDSINEWNKSGKLASDLTKVSEEKGVTWSSSKQGYQL DWPNGLAISQDLEDNTLQHYFMSINNISGLFNMTLSGTETFVFDADHSIVDKVQLTQIGT LNESTLQSDDKNRSSADRGATSQYQSSEEAIPSRQENKGNSSNTIGENNSPNIKVTPASQ FSSFAFTNTSDKPITIDPRAIMLMLDNGPVKVPTEVLEAGPVTIQPGQTHNYPNLFGKDV QKATALSIALDTGGNMIWTWESGN >gi|225002513|gb|ACIZ01000066.1| GENE 50 51770 - 52639 533 289 aa, chain - ## HITS:1 COG:no KEGG:LSEI_1511 NR:ns ## KEGG: LSEI_1511 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 289 1 289 289 452 90.0 1e-126 MLKKMVVFSLLALTMAGCGSPSANDKPKSTSSVEIASKYYHQLDKKEQSKVFFTFKAVAD DSQDGGKYIVDMKVRNGTKSQLKFDLSKFILSTSNTGTPIKSVNHGDLTIAPMRTKTVTG LFDSATAANFNGVGEFCYLSRDFLLAYSYGADKDAGATTDNLKVASLIAQNKAATQKPSA SAVSTQSQAATSAPASEASQQVSQASTQPTQQSQASSAPVHVVNSAEQAKQIAAPFLNVY DASGLRATPVDDGWQVGPQMTYADVIVHYNGRVFSPANPASGQPDHWLN >gi|225002513|gb|ACIZ01000066.1| GENE 51 52841 - 53116 145 91 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKTAMKQATFFAIQITISTLKNSTISNESIVKLLAARFHPTSDRPNLPAALSFGSKTPI TFTTIRLTLSLTRLGLVQMRPFFSSPIQFPY >gi|225002513|gb|ACIZ01000066.1| GENE 52 53227 - 53754 237 175 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116511598|ref|YP_808814.1| acetyltransferase [Lactococcus lactis subsp. cremoris SK11] # 10 174 15 180 185 95 36 5e-19 MREKLKHAYQTERLVLAPVTIDDAPDMFEYASNPENAYYVFETNKTLGDTKDIIQKIFIE NGLGKYGIFLNEKLIGTIYFLNLDDRNKSAELSYVLNKKFEGHGYATEAAIKLRDIFFNE LEGERLYARHTFDNLKSMNLMARIGMKIEGTLRKSYCFHGRQVDLAIWSMTRDDL >gi|225002513|gb|ACIZ01000066.1| GENE 53 53850 - 54479 278 209 aa, chain - ## HITS:1 COG:no KEGG:LC705_01531 NR:ns ## KEGG: LC705_01531 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 209 1 209 209 282 100.0 5e-75 MTGFLIKDFIIVKKRILKLPVLISLFGAFLVAVFVNKDIAELFVFSSSALAIVALETLFQ LDNQSHWKDFLVPYHLNPFKIVGSRYVFYAIACFATSFLAFVMSLIIEIIVPKTSPMQLF GITAIIFVVCSVFGIILLPAMYAFSQSGLMFIFIIILLLMAILPRIRSAKLQAFLMSQNK ASLFLVAVAAVACLYVISYFFSVLLYRYR >gi|225002513|gb|ACIZ01000066.1| GENE 54 54460 - 55182 204 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 24 213 17 220 311 83 30 3e-15 MNSSKGKQHANHILMLKALSVEIGHFSLKDVNLSINAGDVLGVIGSNGAGKTTLLKTIIG ILKPTSGTVFIKKGTAISMAFDDGYIPESLSAKDIDYIFPKIFKRWDREKYRQYIDKLKI PKQTNFIDLSKGTKTKLGLAVCLSMNGDLVILDEITSGIDPLTRIEILNEIKAYQNQTGA SIILVTHILDDVIQLCNRFVVLTNGSITTDFSLTPETDEAVLKSLLVAKKWGILNDRLSY >gi|225002513|gb|ACIZ01000066.1| GENE 55 55187 - 55342 108 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTFFKIIIAISIIVDIFVIAKTGFGSTATLGTMTVTLAILFIANFYDRRG >gi|225002513|gb|ACIZ01000066.1| GENE 56 55835 - 56146 289 103 aa, chain - ## HITS:1 COG:no KEGG:LC705_01533 NR:ns ## KEGG: LC705_01533 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 103 1 103 103 195 100.0 4e-49 MGESLPKAVKVWMAANILAIEFDNGQTRYLRSHNIKDYISAWSLKKGKGKRVNLILPPTW QWLGSNARIEKDGSVILFEKDSYTPQELWNNSKERIDLVSGVN >gi|225002513|gb|ACIZ01000066.1| GENE 57 56296 - 57111 593 271 aa, chain - ## HITS:1 COG:L1006 KEGG:ns NR:ns ## COG: L1006 COG1381 # Protein_GI_number: 15672040 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 9 252 7 248 251 176 34.0 4e-44 MVKQTQTFEGLVMSRQNYRESDMLVKILTDQFGKKMFLVNRARKPGFTLAAGILPFTHAD YIGEVRDSGLSYLSAIKSPTQYRQISNDITLNAYAAYIFGLLDLAFPDERPVGFWFKQVK QALHLIDTGLDPQIIANVVEVQMLKAYGVEPNWRGCVIDGRTDLPLDFSESYGGLLCQQH WDKDPHRLHASPRAIFYLRRFSTLDLSQVKRIDVKPATKAELKRILDVIYADMVGVTPKA KRFIDQMNQWQDRLPDRTKSEDSSNNDRPHI >gi|225002513|gb|ACIZ01000066.1| GENE 58 57111 - 58013 875 300 aa, chain - ## HITS:1 COG:SA1396 KEGG:ns NR:ns ## COG: SA1396 COG1159 # Protein_GI_number: 15927147 # Func_class: R General function prediction only # Function: GTPase # Organism: Staphylococcus aureus N315 # 1 294 1 294 299 372 61.0 1e-103 MSEHHSGFVAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVD TPGIHKPKNELDDYMDKAALSTLNQVDAILFMVAADEQKGAGDAYILRQLAEVKKPVYLI LNKIDLVKPDDLLPLIESYQHDYHFAQVFPISATMGNSVDELLNSLTGTLPEGPQYYPED QLTDHPEYFVVGELIREKILELTRDEVPHAVAVQVERMKDREGGKLQIEAYIIVERDSQK GIIIGRGGQMLKQIGIRARRDIENLLGDKVNLKLWVRVQKNWRDNNAYLKSLGYNMKDLR >gi|225002513|gb|ACIZ01000066.1| GENE 59 58010 - 58402 427 130 aa, chain - ## HITS:1 COG:lin1500 KEGG:ns NR:ns ## COG: lin1500 COG0295 # Protein_GI_number: 16800568 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Listeria innocua # 9 128 10 130 131 136 59.0 1e-32 MLSVLRTAALAARENAYVPYSHFAVGAAVRVGERIFSGANIENASYGLSNCAERSAIFAA VSAGYTQLDELLVIADTKGPVAPCGACRQVISEFFAADAVITLTNVRGETVQTTPQALLP GAFSKGDLQA >gi|225002513|gb|ACIZ01000066.1| GENE 60 58403 - 58801 319 132 aa, chain - ## HITS:1 COG:L95012 KEGG:ns NR:ns ## COG: L95012 COG0818 # Protein_GI_number: 15673069 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Lactococcus lactis # 5 129 26 150 151 88 37.0 2e-18 MALPDKQIGKNKHFIQSARHALDGLRVFFVDENNFKREFVSATLVIIAGIWLKVPPFSWF VLILAILLVFLGELLNTIVENMVDFIIGEHYDLRAKKIKDMSAGAVLIVSLIAVVAGIYV FGPPLLALLRSW >gi|225002513|gb|ACIZ01000066.1| GENE 61 58785 - 59243 530 152 aa, chain - ## HITS:1 COG:lin1502 KEGG:ns NR:ns ## COG: lin1502 COG0319 # Protein_GI_number: 16800570 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Listeria innocua # 1 152 4 161 161 120 41.0 1e-27 MDLEFYDDDHLLDDQHHELIQKLVAFCGQQLALPNDTEMSITIVGDDAIQKINREYRDTD RATDVISFAIEDGEDDLPLMPGMAKNIGDLFIDPLTVRRHAKEYGHSFERELGYTVVHGF LHLNGYDHIKPEDEAVMIPLQKKILTAYGLTR >gi|225002513|gb|ACIZ01000066.1| GENE 62 59247 - 60233 965 328 aa, chain - ## HITS:1 COG:lin1504 KEGG:ns NR:ns ## COG: lin1504 COG1702 # Protein_GI_number: 16800572 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Listeria innocua # 20 319 19 319 319 380 65.0 1e-105 MAQETSEKIFRFSNPDMAINLVGINDANLTLIEEGLNVRISPFGDELRISGEAEAVSLTL QLLEAATKLLAQGIKLSPQDIASAVAMAKRGTLEYFADMYSETLLRDAKGQPIRIKNFGQ RQYVDAIKHNDITFGIGPAGTGKTFLAVVMAVAAMKAGQVERIILTRPAVEAGESLGFLP GDLKEKVDPYLRPVYDALYAVLGKEHTDRLMDRGVIEIAPLAYMRGRTLDNAFAILDEAQ NTTQAQMKMFLTRLGFGSKMIVNGDVTQIDLPHNAKSGLLQAEQLLKGISHIAFTQFSAQ DVVRHPVVAKIIEAYGKHDLQLQKQTKE Prediction of potential genes in microbial genomes Time: Wed May 25 19:55:54 2011 Seq name: gi|225002512|gb|ACIZ01000067.1| Lactobacillus rhamnosus LMS2-1 contig00070, whole genome shotgun sequence Length of sequence - 16567 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 8, operones - 5 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 223 - 263 7.5 1 1 Op 1 . - CDS 265 - 708 414 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 2 1 Op 2 . - CDS 727 - 903 286 ## PROTEIN SUPPORTED gi|199599325|ref|ZP_03212723.1| Ribosomal protein S21 - Prom 963 - 1022 8.9 + Prom 1094 - 1153 4.2 3 2 Tu 1 . + CDS 1176 - 2006 790 ## COG1806 Uncharacterized protein conserved in bacteria + Term 2030 - 2068 -0.0 - Term 1886 - 1933 1.5 4 3 Tu 1 . - CDS 2003 - 2890 841 ## COG0648 Endonuclease IV - Prom 2928 - 2987 3.4 - Term 2978 - 3019 -1.0 5 4 Tu 1 . - CDS 3038 - 3958 685 ## COG1284 Uncharacterized conserved protein - Prom 3995 - 4054 6.0 6 5 Op 1 . - CDS 4263 - 4709 405 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase - Prom 4730 - 4789 4.6 7 5 Op 2 13/0.000 - CDS 4795 - 6600 1537 ## COG0173 Aspartyl-tRNA synthetase 8 5 Op 3 . - CDS 6602 - 7885 1236 ## COG0124 Histidyl-tRNA synthetase - Prom 7990 - 8049 1.7 9 6 Op 1 . - CDS 8445 - 9953 884 ## LC705_01548 ABC transporter permease 10 6 Op 2 . - CDS 9950 - 10825 602 ## COG1131 ABC-type multidrug transport system, ATPase component - Prom 10847 - 10906 4.8 + Prom 10804 - 10863 4.9 11 7 Op 1 . + CDS 11025 - 11471 350 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases + Prom 11474 - 11533 4.5 12 7 Op 2 . + CDS 11559 - 12881 1291 ## COG0860 N-acetylmuramoyl-L-alanine amidase + Term 12928 - 12980 12.1 - Term 12914 - 12966 12.1 13 8 Op 1 . - CDS 12983 - 13609 509 ## COG0546 Predicted phosphatases 14 8 Op 2 7/0.000 - CDS 13609 - 14055 499 ## COG1490 D-Tyr-tRNAtyr deacylase 15 8 Op 3 . - CDS 14182 - 16407 2088 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases Predicted protein(s) >gi|225002512|gb|ACIZ01000067.1| GENE 1 265 - 708 414 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 147 1 147 147 164 53 5e-40 MALMDELNAQMKQSMLAKDKVTLSVVRMLKTALVNEKIKLGHDLSEDEEKSVLATELKQR KESVSEFKKGGRSDLVEATEAEIKVVERFLPAQLSKDQVADIVDATIKEVGATGKQDFGK VMKTLMPKVKGQADGALVSSVVKEKLS >gi|225002512|gb|ACIZ01000067.1| GENE 2 727 - 903 286 58 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|199599325|ref|ZP_03212723.1| Ribosomal protein S21 [Lactobacillus rhamnosus HN001] # 1 58 1 58 58 114 100 3e-25 MAKTVVKKNESLDDALRRFKRTVSKSGTLAEYRKREFYEKPSVRRKLKSEAARKRKKY >gi|225002512|gb|ACIZ01000067.1| GENE 3 1176 - 2006 790 276 aa, chain + ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 7 261 10 264 270 219 43.0 3e-57 MTQELNLYIMSDSVGETGLRLAQAVAAQFPEFEAHYVRFPFIHTKEKIYSAIDEAKKENA LAIMTFVTDGFAQLATHYAKDQGVIAIDVMSPILSGIKSITHEEPNHVPGAVHDLNERYF DRISAMEFAVLYDDGKDPKGFLEADIVLLGVSRTSKTPLSLFLANRNLKVANLPLVPNAH IPEEIWQVDPKKIVGLTTDASVLMEFRRQRMIQYGLNPDTAYSARDQVNQELKFAEDLYK KIGCMVINTAHRSIEETATLILEHMGLDEFDNTETH >gi|225002512|gb|ACIZ01000067.1| GENE 4 2003 - 2890 841 295 aa, chain - ## HITS:1 COG:lin1487 KEGG:ns NR:ns ## COG: lin1487 COG0648 # Protein_GI_number: 16800555 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Listeria innocua # 3 293 4 294 297 367 62.0 1e-101 MLIGANVSMKGTKMLLGAVEEAASYEANTPQFYTGAPQNTRRKPTSEMRIPEGLAAMAKD DISHPVIHAPYIVNLGNTKKPANFEFAVQFMQEEVARADALHAYTMPFHPGAHVGAGPEA AIAQIIKGLNRIIDPNQHVTIALETMAGKGTEIGRSFEELAAIIDGVTYNEKLRVTFDTC HTNDAGYDVKDDFDGVLNEFDHIIGIDRLSVIHVNDSKNPQGSHKDRHANIGFGTIGFEA LNRIAHHPALEKLPKILETPYVGPDKKHQVPPYGAEIKWLKTSHFQPEELRKLMA >gi|225002512|gb|ACIZ01000067.1| GENE 5 3038 - 3958 685 306 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 8 302 30 310 313 261 45.0 1e-69 MEEIDRLIRRHQNWSRLSAAFFYSICVAVALNMFWEPGGVFASGITGAAQLLATIVRKWF NFNIALPFFSLATTDLFSTGTLLFFLNVPLFVLAWKAIGHRFTLFTFLAVIFSTIMIRVL GVLTPLTKDPIVCGIFGAVVNGLGTGFALRNNISTGGIDILGIVLRKRTGRTVGTINIMF NVLIIFFAGFVNDWPHALYSALAIFINGRVMDSLYTRQQRLQVMIVTARPKQVVREIQGS LRRGITIVHDAEGAFHHEEKTILFTIISRAEMYDLEQAMRHSDPYAFVSITDSVKILGHF YEPKKD >gi|225002512|gb|ACIZ01000067.1| GENE 6 4263 - 4709 405 148 aa, chain - ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 12 148 6 144 145 185 61.0 3e-47 MSDKINRPSKAKLKKQLSPEAYAVTQEAATERPFTGQYDNFYEDGIYVDVVSGEPLFSSQ DKYDAGCGWPSFTKPIAKLAEHRDQSFGMERVEVRSPQAASHLGHVFTDGPAAEGGLRYC INSAALRFIPVAKLEEEGYGKYRQLFDK >gi|225002512|gb|ACIZ01000067.1| GENE 7 4795 - 6600 1537 601 aa, chain - ## HITS:1 COG:lin1554 KEGG:ns NR:ns ## COG: lin1554 COG0173 # Protein_GI_number: 16800622 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Listeria innocua # 1 582 1 584 591 716 59.0 0 MSKRTCYAGDVNTDYLDQEVTLKGWVQKRRSLGSLIFIDLRDREGIVQLVFSEAIDRDAL TVANSVRSEYVVEVQGVVKKRKPQAVNPEMKTGDIEVEVHDITILNKAKTPPFYIEDNVA VTEETKLKYRYLDLRRPEMQKNIFTRAHIMRSVHHYLDDNGFIDVETPTLTASTPEGARD YLVPSRVYPGSFYALPQSPQLFKQLLMGAGFDRYYQIARCFRDEDLRGDRQPEFTQIDLE TSFLSAEEIQDITEGLIAQVMHDVKGIDVDLPFQRITWQEAMDKYGSDKPDLRFDMQIQD VSDFVKDSDFKVFAGAVQNGGQVHAIVLPGGAAKYSRKMIDAQQDYIKRFGAKGLAWLKV TDDGISGPIAKFFGDGAALTQAVGAHTGDLVLFVADKAKVVADALGYLRTHFGHDLGLID EKEFRFCWVVDWPLFEYDEGIQRWVPAHHPFTMPNEEDVHLLDTDPHAAHAQSYDIVLNG YELGGGSIRIHNRDIQEKMLKALGFTPERAQKSFGFLLNALDYGFPPHGGLAIGLDRFTM LLTGRDNIRDVIAFPKNSKASEPMTSAPSPVADIQLKDLGIEVRPDVDPEKEHEGDENLT E >gi|225002512|gb|ACIZ01000067.1| GENE 8 6602 - 7885 1236 427 aa, chain - ## HITS:1 COG:SP2121 KEGG:ns NR:ns ## COG: SP2121 COG0124 # Protein_GI_number: 15901936 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 423 1 424 429 472 55.0 1e-133 MNYQRPKGTADILPGQSERWQQVEAVARKIFAQYQYREIRTPIFENVDVFSRSAGDTSDI VTKEMYTFEDKGDRMMALRPEGTAGVVRAYVENKLYGPEYAKPYKVYYMGPMFRYERPQS GRQRQFHQIGVEAFGSDSPVLDAETLALAKQLLEALGAKHLKFVINSLGDPATRKAFHAA LVDYLTPFKDELSEDSKVRLVKNPLRILDSKDKHDQEIVADAPSILDYLTPEAQQHFDRV KSLLTGLGIEFEVDATMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEELGG PETPGIGFAMGVERLMLLMQGDQQPVQPDAYIVTIDQGADQEALQMLTALRQQGFTGEMD YMGRKAKGQFKAANKANAKLVLTIGESEREAGTVQVKNMATGQQKAFPQADVLADFSKIY TQVTEAK >gi|225002512|gb|ACIZ01000067.1| GENE 9 8445 - 9953 884 502 aa, chain - ## HITS:1 COG:no KEGG:LC705_01548 NR:ns ## KEGG: LC705_01548 # Name: not_defined # Def: ABC transporter permease # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 502 1 502 502 873 100.0 0 MMHMILTDYRQRSRQFSFRLLAVFALFSAVLLAPRQTGSFRVLVLDPHYFAQANNPTWAP VGVVAVLTFFFPFIGLVLARQGMSQDRESGILSAFLTGPFKKIRYVAGEFLTNCLLLLTI LVFVMMGTLAMMVIQYPGQGLHISQFIATFAILIPGVGLISALAVISETIPGLRGRFGTS ILIMLLFIGYAMMIEAKWYAQVVDFSGIVLLQALFKQSALESGHRLTSMMILGGNDHLSR AGTHDLVFQTLTLTSTQWLCIGGSVLLSLMLVGLAGLFLERRPLTRRMTHQHSAMRITLP EAAANEADFNAVSIQHFSWPALWRQAMKQLLASRSVGWWLILAGLWGANWIAPTSSLRST LLPITYLWALLFFSQLGWPEQRNGLANWLTTINFAKKRHLNVTLLVAVGFSILLALPTCI RLGVTAWPLLSWALMLPVVAMLLGFVTKTGQWTQLIVTVLLFFVVAGLSGILPVATTATG ILTGVGYLMIGAASLVGLELAV >gi|225002512|gb|ACIZ01000067.1| GENE 10 9950 - 10825 602 291 aa, chain - ## HITS:1 COG:CC3566 KEGG:ns NR:ns ## COG: CC3566 COG1131 # Protein_GI_number: 16127796 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Caulobacter vibrioides # 3 285 2 287 294 172 35.0 8e-43 MRLYIENIHKHFGKKPVLNGMTATLESGGVIGLMGPNGAGKSTLLKVLTTQLKPDAGSIQ LDHVDVVTHPGKLRQVLGYLPQQVPYQPNVTALDYLRYIAALKGIKPQDADQQITNLFVT LHLDPKNPTRLRDYSGGMRQRVGLTASLLGDPQIIMVDEPTVGLDPVERIAVRNLLSTLA QNRIVLIATHIIQDVEAIASRLLIVKDGQFQFQGTPADFLQKAAGHVWEYVLPRGAALPS SPNISNMQEQADGIHVRQIAKTAPVSGAQNVTPSLEDATLANFEAKAVTDA >gi|225002512|gb|ACIZ01000067.1| GENE 11 11025 - 11471 350 148 aa, chain + ## HITS:1 COG:SP0628 KEGG:ns NR:ns ## COG: SP0628 COG0537 # Protein_GI_number: 15900535 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Streptococcus pneumoniae TIGR4 # 6 114 18 129 167 69 34.0 2e-12 MWQDDRIQAALDGQNSMVMAELPGGFAVFGDVQFLPGYSVLLPKREVGSLNELSKREQSL FLQSMATLGDAILTACEPLRVNYDILGNTDHFLHAHVFPRYQSEVPERLAKPVWLYDPSY WRDPQYQYEPSQHDAIRQRITAALKTTN >gi|225002512|gb|ACIZ01000067.1| GENE 12 11559 - 12881 1291 440 aa, chain + ## HITS:1 COG:lin1556_2 KEGG:ns NR:ns ## COG: lin1556_2 COG0860 # Protein_GI_number: 16800624 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Listeria innocua # 193 434 3 247 249 182 44.0 8e-46 MKHIGQLKKWPLVILLALLFGVGAATTSVMANTQYMTVKAESVNVRLGPGLAYGIMGQVK SGNELTIIGSKNSWYQVRLAGNKIGWVASWLVDQSEAATTSAKVATVNQPVNVREYASQD AKQLGTLNAGDSVKVVYQEGDWTQIAYNNTAAWITSSSVQLTGQTTNLAQPAQANLTQAK SGAALKVTTNTMTNLRNAAGINAPSVEKLDKGTELTVTKQQDDWYQVTAPDGKSGYVASW TVTAPNNGQTQKAATKLSEATIVLDPGHGGTDTGAPANNNHDYEKTYTLKTAELVANALR AAGANVIMTRTTDTFVDLAPRPTTANNAHADAFISFHFDSSPSKNSASGFTTYYYSSKKD LALAKAVNNAFDDLPLENRGVAFGNYEVLRDNKQPAILNEMGYINNDKDFKYIKNPTYQS KIATDIVNGLNAYFKAGHHQ >gi|225002512|gb|ACIZ01000067.1| GENE 13 12983 - 13609 509 208 aa, chain - ## HITS:1 COG:L126819 KEGG:ns NR:ns ## COG: L126819 COG0546 # Protein_GI_number: 15672886 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Lactococcus lactis # 4 182 5 179 215 97 32.0 2e-20 MLVNAIWDFDGTLYDSYPGMMKALAALVTANGGQIKPKTLYRQVKETSIKQFLTGFGQQV GRSVVDLEADYHQRARAYLQDIHPYPEALAVLKAIKAQGGHNLLLTHRDRSAWEILAHDQ ADTLFLGGVDADLKLPRKPAPDAIQYLLRRFQLNPAVTAMIGDRSLDVDAGINADVKTIY FNVDGLNAAPQADYQVDHLIEIPPLFRK >gi|225002512|gb|ACIZ01000067.1| GENE 14 13609 - 14055 499 148 aa, chain - ## HITS:1 COG:BH1243 KEGG:ns NR:ns ## COG: BH1243 COG1490 # Protein_GI_number: 15613806 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Bacillus halodurans # 1 146 1 146 146 168 56.0 4e-42 MRAVVQRSLAAKVTIAGQTVGAIDHGFVVLLGVGPEDTSADSDYLAEKISKLRVFSDDAG KMNLALADVGGQVLSISQFTLYADTRHGNRPSFTGAAKPALGEQLYDTFNAKLRDLGVTV ATGEFGGDMQVSLTNDGPVTILFDTEAK >gi|225002512|gb|ACIZ01000067.1| GENE 15 14182 - 16407 2088 741 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 738 1 735 738 906 60.0 0 MAEEVELTQPDVMKLCKAYMNPEHLAFVEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGI LAELKMDPETVASGYLHDVVEDTNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDEL AENHRKMLLAMAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGI STIKWELEDLSLRYLNPQQYYRIAHLMNSKRTEREAYIQEAIEEIKKALADLHIKYEIYG RPKHIYSIYKKMRDKHKQFDELYDLLAIRVITETIKDCYAVLGAIHTKWKPMPGRFKDYI AMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKEGQTSKVQYDKAG KKLDIFREILELQDESSDAADFMESVKGDIFTDRVYVFTPKGDVYELPKGSNPLDFGYLI HTEVGNHTVGAKVNGKIVPLNYVLKNGDIVEMLTASGSAPSRDWIKLVYTSRARNKIKRY FKQADKSENAEKGRDMLEHELQEEGYVPKDFMTKENMTGLMQRLNFQTEDELMSSIGYGE YTPKVIANRLTEKFRHAKAEKDRKAKEAAILSKNQKVTTVSSEKHQPQTHSEDGVVIEGV DNLLVHLAKCCMPVPGDAIVGYVTKGRGVTVHRADCPNVQSSREMSGRLIDVRWENEAVQ KQLFNTDLEIYGYNRSGLLNDVLQVLNAQTKALNNINGRVDHDKMADIHVKVGVRNLAHL DKLMDAVKNVPDIYEVKRANG Prediction of potential genes in microbial genomes Time: Wed May 25 19:56:08 2011 Seq name: gi|225002511|gb|ACIZ01000068.1| Lactobacillus rhamnosus LMS2-1 contig00071, whole genome shotgun sequence Length of sequence - 19231 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 12, operones - 6 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 116 - 176 12.1 1 1 Op 1 . - CDS 309 - 632 327 ## LC705_01555 hypothetical protein 2 1 Op 2 9/0.000 - CDS 670 - 1398 731 ## COG1385 Uncharacterized protein conserved in bacteria 3 1 Op 3 . - CDS 1437 - 2381 1598 ## PROTEIN SUPPORTED gi|229552378|ref|ZP_04441103.1| ribosomal protein L11 methyltransferase - Prom 2401 - 2460 5.2 4 2 Op 1 . - CDS 2462 - 2956 617 ## LC705_01558 hypothetical protein 5 2 Op 2 . - CDS 2953 - 3558 434 ## COG2094 3-methyladenine DNA glycosylase + Prom 3584 - 3643 5.1 6 3 Tu 1 . + CDS 3664 - 3912 308 ## LGG_01575 hypothetical protein + Term 3918 - 3974 13.8 7 4 Tu 1 . - CDS 3981 - 4367 428 ## LC705_01561 membrane protein - Prom 4389 - 4448 5.0 - Term 4614 - 4646 2.0 8 5 Op 1 . - CDS 4653 - 4832 177 ## LGG_01577 hypothetical protein 9 5 Op 2 . - CDS 4832 - 5218 291 ## LC705_01563 hypothetical protein - TRNA 5415 - 5502 70.3 # Ser CGA 0 0 - Term 5349 - 5392 10.6 10 6 Op 1 . - CDS 5636 - 6226 295 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 11 6 Op 2 . - CDS 6229 - 6786 416 ## LC705_01565 transcriptional regulator TetR family - Prom 6828 - 6887 5.2 12 7 Tu 1 . + CDS 6718 - 7056 97 ## gi|229552388|ref|ZP_04441113.1| hypothetical protein HMPREF0539_1644 + Prom 7124 - 7183 6.9 13 8 Tu 1 . + CDS 7211 - 8215 703 ## COG0673 Predicted dehydrogenases and related proteins + Term 8225 - 8264 4.3 - Term 8212 - 8252 9.1 14 9 Op 1 25/0.000 - CDS 8318 - 9934 1195 ## COG0438 Glycosyltransferase 15 9 Op 2 . - CDS 9931 - 11487 1071 ## COG0438 Glycosyltransferase 16 9 Op 3 . - CDS 11539 - 12804 1038 ## LC705_01569 hypothetical protein - Prom 12877 - 12936 2.8 17 10 Tu 1 . - CDS 12979 - 14694 915 ## LC705_01570 cell surface protein - Prom 14751 - 14810 4.2 - Term 14761 - 14801 2.5 18 11 Op 1 . - CDS 14834 - 15073 210 ## LC705_01571 hypothetical protein 19 11 Op 2 . - CDS 15079 - 17799 1876 ## LC705_01572 membrane protein - Prom 17988 - 18047 2.5 20 12 Tu 1 . - CDS 18160 - 19230 1051 ## LC705_01573 hypothetical protein Predicted protein(s) >gi|225002511|gb|ACIZ01000068.1| GENE 1 309 - 632 327 107 aa, chain - ## HITS:1 COG:no KEGG:LC705_01555 NR:ns ## KEGG: LC705_01555 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 107 1 107 107 150 100.0 1e-35 MSRVMNWVKVPRNKVVCWSVLITLIVPWVFPLFHISTAVRVGVLFILINMLSALWIGRTI RRHHLSWWWLFVLPVLFTLMVFLRYKWYAYFFAPIYLLLGVLAMAKD >gi|225002511|gb|ACIZ01000068.1| GENE 2 670 - 1398 731 242 aa, chain - ## HITS:1 COG:SP1781 KEGG:ns NR:ns ## COG: SP1781 COG1385 # Protein_GI_number: 15901610 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 241 1 245 247 174 44.0 2e-43 MQRFFTEHLLHSQQTFTLEPAIAKHAIKVLRYDVGAVFELADPKHRVYQATVQTTDPLTV EIGPEITKNVELPIAVEVVCGVSKGDKTEWIVQKATELGAAKIGFFNAQWGTARWPAERI AKKMDRLATIAQNAAEQSHRNLVPEVTMYAKLSDVGDDAAVKLVAYEESAKKGEHAALVS ALVPHPASLCVVFGPEGGISPAELALLQARGFTPAGLGPRILRTETAPLYLLSAVSVLTE LA >gi|225002511|gb|ACIZ01000068.1| GENE 3 1437 - 2381 1598 314 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229552378|ref|ZP_04441103.1| ribosomal protein L11 methyltransferase [Lactobacillus rhamnosus LMS2-1] # 1 314 1 314 314 620 100 1e-177 MNNDWTALTVTTSTEAVEAVSNILMEAGAVGIQIKDAADFKKETIDAHGTWFDPATVPHL ATGAQVIGYFEPATSLIEKRDHLASQVKALAQFGLDPGAATVTLADVRQQDWADVWKKYY HPLRVSRFLTIVPKWEHYTPQQPDELVLTLDPGMAFGTGTHPTTQLMLSLLESLVRGGET MIDVGTGSGILAIAAERLGVSQILATDVDEIAVKNAQANIALNPVSHITVKANDLLQGLT VSADLIVANILAEVLVPLIPQVPSRLNPHGHFLLAGIIAEKADLIRQTLQDNGFTIAQRR DAGGWVAFDAVLKA >gi|225002511|gb|ACIZ01000068.1| GENE 4 2462 - 2956 617 164 aa, chain - ## HITS:1 COG:no KEGG:LC705_01558 NR:ns ## KEGG: LC705_01558 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 164 1 164 164 266 100.0 2e-70 MSQMNMLDAIGDKMDQLDFDGDLSLNWDKDAHVIELEITMTAESEAGVEVEDQTGTTVDD GLVTYQDAILFYDETRMHGADYADDYLAIFGFNGKKGIDVATVNALFIYLQDLLDDGQSD LMDFVDGTSDDDTFALNFDEARYEAILAEQPDADNRIFLPYPKY >gi|225002511|gb|ACIZ01000068.1| GENE 5 2953 - 3558 434 201 aa, chain - ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 15 191 12 193 202 152 43.0 3e-37 MILPWLETQSTLDSARQLLGMKLSLGACSGLIVETEAYLGARDQAAHAFNHRHTTRNHSL FLAAGTVYVYRMRQYCLLNIVTQPVDVPECILIRALEPISGLATMQTRRKQIGIGLTNGP GKLCQALAIDKQLDGTVLNQSGLSLAPTDHRPRNIAVGPRIGIPNKEPWTSAPLRFYVAG NPFVSKIPRRDQDLEMRGWQS >gi|225002511|gb|ACIZ01000068.1| GENE 6 3664 - 3912 308 82 aa, chain + ## HITS:1 COG:no KEGG:LGG_01575 NR:ns ## KEGG: LGG_01575 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 82 1 82 82 135 100.0 4e-31 MAENLALRALISQQTDALVSELYTDDKVNERLQKWLARVPDPGVADTYSYLLAESREFSE ELLYRILSKLAEDGALKLPTEA >gi|225002511|gb|ACIZ01000068.1| GENE 7 3981 - 4367 428 128 aa, chain - ## HITS:1 COG:no KEGG:LC705_01561 NR:ns ## KEGG: LC705_01561 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 18 128 18 128 128 191 100.0 6e-48 MKKVVGIVGVLVLIVIGFFGYQYWNSTYNGVDAYAVVIEGKKVASKNEDGSLYKVNGKQY YTYEYELKWVTKNGQTRNLGYSSEESANPKALTPGSYVKAKVAQKRVLTTPQPVSEQALP QTVKAKLK >gi|225002511|gb|ACIZ01000068.1| GENE 8 4653 - 4832 177 59 aa, chain - ## HITS:1 COG:no KEGG:LGG_01577 NR:ns ## KEGG: LGG_01577 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 59 1 59 59 85 100.0 6e-16 MPWLKHKKDDEPEVGIGDHDFSQFVKNARRDPQRFKAVQSVFDRLKRSPRKDNKRSIKR >gi|225002511|gb|ACIZ01000068.1| GENE 9 4832 - 5218 291 128 aa, chain - ## HITS:1 COG:no KEGG:LC705_01563 NR:ns ## KEGG: LC705_01563 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 128 1 128 128 219 100.0 3e-56 MKVSIKKVPALYDLLYGAFALVMLIAAVITTLPKGFSFTGVGATLMSWANHLWWLTIPGI IFHLLSYFSSHNQRLLLVGNLVGICAFIAFILIPNYSVFALIGLLVAMVFVLAGANRAQR MRKDSEVS >gi|225002511|gb|ACIZ01000068.1| GENE 10 5636 - 6226 295 196 aa, chain - ## HITS:1 COG:mll1286 KEGG:ns NR:ns ## COG: mll1286 COG2249 # Protein_GI_number: 13471345 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Mesorhizobium loti # 6 158 5 172 195 89 29.0 6e-18 MSKFAIVYCHPYDKSFNHAILLAVCQNLSNRAIGYTILDLYHDGFQPTYDQEELSLFHSG QTHDPLVKKYLNTLKEVDGLIIVTPVWWNDIPAMLKGFIDKVMKEGPGLSHVVTKRGVKG LLTNLKHVYVLTTSTSPTFYLRLFCGNALQGVFIKHTLRQLGIRRAHWQNFGNITHSSLK QRQKYLEYVTEETIKY >gi|225002511|gb|ACIZ01000068.1| GENE 11 6229 - 6786 416 185 aa, chain - ## HITS:1 COG:no KEGG:LC705_01565 NR:ns ## KEGG: LC705_01565 # Name: not_defined # Def: transcriptional regulator TetR family # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 185 1 185 185 332 100.0 4e-90 MADRKIDTDQRIMDKAISMINEHGEESLSLRKLAQGIGLTTGAFYTHFSTKEELLQAVTV LLSRQEQSRMAKKLQTVRKPEEQLLTVASILLRQFKDEPNLMHFLFFNPIARNVLKVDRG EFAFYDQMMQMVEAVIQKRHLSVQPKDLFIQLWAFIQGYGLLLDSDVTEYDAVLVRETLL RLLEA >gi|225002511|gb|ACIZ01000068.1| GENE 12 6718 - 7056 97 112 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229552388|ref|ZP_04441113.1| ## NR: gi|229552388|ref|ZP_04441113.1| hypothetical protein HMPREF0539_1644 [Lactobacillus rhamnosus LMS2-1] # 36 112 1 77 77 133 100.0 3e-30 MFVNHADSFVHNSLVCIDFSVGHSLIFFQNNSVISMIASIITVLSGKNKLLRSFFTHHDI QDTWLFLKQLIFFKLRSSPLIWQHYEIFQLIYLNNTANYVFKIITINNRFPE >gi|225002511|gb|ACIZ01000068.1| GENE 13 7211 - 8215 703 334 aa, chain + ## HITS:1 COG:lin1837 KEGG:ns NR:ns ## COG: lin1837 COG0673 # Protein_GI_number: 16800904 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 2 294 1 291 327 187 37.0 2e-47 MLKYGIIGGNENALEFIDAADISEKWQLTAAFTETAREMAAIREKHPETVFFSDLNAFFK SPNFTTVFISSSSPNMRHFPQIKQAILAGKNVIVQPPALTNPTEFKEVEQLLRTHPEVHF FEAAYPLHMPNFQNILTAVRKLPAIQGATFTAMQEFPGYDDVLAGKRLQGFTPESAGGAL QMLGLYPLYAAFSLFGHPSNGNYFATAINTGADGLGTIFLTYPAFNITIHIGITTDSFMP SEIYGLREKIVIDNITELRLINHYDADRQNHLLNTITYENRLTGEALAFAEILETPNDPQ NRLRYQTWLELARDVNTTLFHLRTLVGLKFPTDV >gi|225002511|gb|ACIZ01000068.1| GENE 14 8318 - 9934 1195 538 aa, chain - ## HITS:1 COG:L76469 KEGG:ns NR:ns ## COG: L76469 COG0438 # Protein_GI_number: 15673436 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 534 1 534 541 760 66.0 0 MIFFINSSFNQSNSGIEHAQLKRAGLFRDHGEPFKMIFREWNPRLHDYLQANGVSDDETL GMFDYFQAAEEVPTKILHAKDIDFGLDQLSYQKEPEQFRYLVLRGQQFVARINYYRDDPT ERVSSVEQFDAFGNLYRVDFYDFRGFLSLSQWYTPDNKVGTEVWYKVDGRPVLETFNKYD AKQTFTKTGWRLTEDNGAVYLFSNIDELTVHFYNRLNEQYWNNKRANIFIVDRSHLGDWQ LLHLRRPAYTVLHLHNSHAGDAQDPMHSVMNNFYEYGLIHANDYDAIISATEKQTRDVRA RFQPKSKLFTIPVGVIPDEQFARPKIAMADRQQGKVIVTARVAPEKRIDHIIEAIGIAKK EVPNISLDVYGYVDHRDNDEAMTKINAAIEKYQLQDVIKLHDYVKDVGAVQREGQVYALA SVMEGFNLSLMEAISNGLVGVTYDVNYGPNELIVDGENGFVVPFDDIKAMAAKFVDLFKH PDKLQQMSDRSYELSDRYSEANVWHAWEALLEDAKKKPLPFTEEISSGIGDQRVKDNA >gi|225002511|gb|ACIZ01000068.1| GENE 15 9931 - 11487 1071 518 aa, chain - ## HITS:1 COG:L78550 KEGG:ns NR:ns ## COG: L78550 COG0438 # Protein_GI_number: 15673437 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 511 1 506 506 539 51.0 1e-153 MNYFVNENIFSMNSGTEFSAAQRLRLFKDHDVPAKILTRNYNPLLIDDLKRVKLTQSDVL NMYDYFQEATFVEPRDIDIRYTEVIDKFDYHIVGVDANESQIVHHGKVVGKALVAPATVG LVGSLEYYNDMNATVAKDVWDRRGFKSSTQYFHPDGQLGPQIFYNPEGAPKLEIVRMNVN GTLMNTMYQLLDYKGRAWRFNSESELFVFFMNEVVAAEPSVLINDRPSLINEVAAVTGAN AKWQYLHSVHTHNPEQVGGSRNYVDYLKPLFATHANDFDGIMVATDEQKQEIEKFFHFKH VMVVPDSFAEAHDLVPIESRDRNKIVYLGRISPEKEPQEAIKIFAKARKKLPDLHLDFYG YVSDEATNESMVAYSKELGVDTAIHYHGYQSEDELAKALGTAAAMLSVSSSEAFGMNILQ ALSYGVPVIGYNVKYGPKLLVENGVNGYLVPTGESKAAADSLVKLLTSTEAGHTWPEMVQ AAYRQSQTFSADAAWKQWEAQLSTVPNLFLRLDRSAER >gi|225002511|gb|ACIZ01000068.1| GENE 16 11539 - 12804 1038 421 aa, chain - ## HITS:1 COG:no KEGG:LC705_01569 NR:ns ## KEGG: LC705_01569 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 421 1 421 421 533 100.0 1e-150 MGIFNRKEQPETPDVLNSLNERLSENQQRQKLGGGNQELQQENTGDQQKDEPTTGKTLSP EQLEQLNSAASLATEILKPATGSGRTWSMNISGGTELNFANDQLTVYVKDESASTAQLQP ATPSKAIASQPQAAAMPAQPEPAEKADKESLSDPKTVVSDNTDAATASQAESARQTPAAA GASVSQLQAKAPAKDDDANTASQMNPPTDNTNLTRGPYYEAQKQNSTLITQIAVLQKMNT RLASQIEQWQTYRTKTTAYLKELSAKYKAVLAEHEKDQQVVSEFSTLHQQHEELKAQNEL LQTQVADLSSHLEAAVSERDKAQAAKEALQNELSKQIVATQIAETDLKHVQADLAAAKQT QQELQTALSDSEAKVARLSELSASQPVAADAETQKNVAALDQAGVFPSEDAPVFESDFPE A >gi|225002511|gb|ACIZ01000068.1| GENE 17 12979 - 14694 915 571 aa, chain - ## HITS:1 COG:no KEGG:LC705_01570 NR:ns ## KEGG: LC705_01570 # Name: not_defined # Def: cell surface protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 571 2 572 572 1010 100.0 0 MSRQKQLQSALLGRHGKFKTAKVRGKWMMASEVVLSFSVLVAFSSLHPVTASTTANEEQP ATHTATSSVASDRASPDITSVASGSKDSSPPANSFEANGAQQKTVQPLETMKTATANNPE AEAKEPVSGDQNEKHDLTAADPNTNQSPSIATAPVTIAQKSSWTPEENFLNANDSNGQAV PIDAIQVIGTVHPAIVGTYFVQYAFTDAPTGKDVAQFSSVTVTNQASAIDERQIGGDVLP PTPSETVAAIKTKDTLLAKKSSWTPDINFVSATNSDGASVQLEDISITGTVNPAYEGTYF IRFSFMDPKLKQLIANMARVTVVSSLTSKPNPDASGMLKVKNLSSFFPSTSNYPSAKNVY LLDDPNFKPDEAEIVSYFHQYVNELRALNGQSALTLSERDTSRAQQRVRAIVEDFNHEAV SHATENIGTNTGITDHMRSNQEIAYYMVMAWYDETDNPEPLGNGHYGHRANLIYGGPSMG VSFYRPPAGSAEFSDYYAFEAPIYTDLGLYLKAKAMANSLTNPTSIPLPNISFVYVNASL LAELRSYLNASPLGQLDATAKSNAKPSLSIA >gi|225002511|gb|ACIZ01000068.1| GENE 18 14834 - 15073 210 79 aa, chain - ## HITS:1 COG:no KEGG:LC705_01571 NR:ns ## KEGG: LC705_01571 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 79 1 79 79 146 100.0 3e-34 MHAKIELKNLTLRKNESFQPEALLVEATDSSGHQVPLENFRMSGEVKPWIPGVYPIVISF TDPESNQQIENKALVTVIQ >gi|225002511|gb|ACIZ01000068.1| GENE 19 15079 - 17799 1876 906 aa, chain - ## HITS:1 COG:no KEGG:LC705_01572 NR:ns ## KEGG: LC705_01572 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 906 8 913 913 1313 99.0 0 MKSNQGSGPDNTNRIQMKRTHFRSWKKGKRWLFASSLIVTVIGAGALESGKTVKADSVTP ETIRVAAAIDQVGTHEQKPAAQQEPAHAQVSQASVSKPVVAASSAATPAVSQAAQPQSIA SVPGVQSVANREPTQIYQTVTTSSAVSSPSSATTYAPTVSPASASVTTSKETNQNSKQSL QTQDIQVQAKEHFDPAVALLGGTDSKGNVLSLDDINLVGTVNTGIPGTYYLRYEYIDPYT QEKLGKNVRVIVKPNTLAQPLENQVNQTSASSLAATPLELSDAASSAPSLALDAAALSSA KSALTSFAKTDQGRIALSEAANKITSGVNFLSAATSLSNDPKVKAFQAQLSEAVATSDVA LQKSLVSSFNATAEGSALASLASFEASVASDPALQSMMSSLSSTAEAKSAADASATSSFM ATAYGKRLLADASSAAFAGSLASAAAVSSFAQTEDGKQMIAALSSYATNSEFAAFNTALS SAVAASNTSLAQSLATSFFATSLGSAFAQDMARFEATNSYKAMQSAISVAQDSVAKQLRS TLIASTQSVVKADTGFSLTGVLGGITNFIWNAVSWLATNINPIRLIPNLTGLGQVGELIE SVIGGTVGSAFYGTVTTAVGGFAAWFIAGVPATVLDSIVGIIPIVGWIANGGNAAELGWV GGITGWLTGIVGSTVGAYYGATMAPGLSKDGKVDAVVSGVALGSTIGGLIGHTLSNWLIS YTIGMIVFGIAGVIVVAAGFLGLGPIVNPLEFILLGWVTPLTDTIASLIGSPIGAAIGGI IGGIAGWLLQLVGVKLNLPDAAGVLKGVAQLPGISDLIGTIAKISSKAGKLVTKNLVIRA KQSFDPSEALVSATDGDGKAVDISDLSIDGSVTVSIPGTYILKYYFTNAANNNEIVEQQV YVTVTR >gi|225002511|gb|ACIZ01000068.1| GENE 20 18160 - 19230 1051 356 aa, chain - ## HITS:1 COG:no KEGG:LC705_01573 NR:ns ## KEGG: LC705_01573 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 6 356 3040 3390 3390 214 100.0 3e-54 EAKAKGDAASSYASAADQSAKQASSSADQASSAATKYPEDPAIKSAADLAKSAADDAAKS AAAAKDAAKSGDDSRASSAAAGAKSSADLAKSAADKAKTAAAAHTPGSDTAKPTQGDFAS TAHAATTAADLAASVAAKAASETASFADGKPKNSSLAYLKSDAINAANIAASAAKDAASF AALSKAAQELAHDYVDPNKAAQALSYAAQYASSATAAADKAKSAATRAQTDRDLAEQIAS HDVDTKGVKDVDGTSKNPKGQDVGRQDVGHSELGANSGSQDNTVHTVATDTSVGDKINPG TTADIIAKNGSGQTKDGSGHTLPQTGETEEAALLALAGIVLMGTLAAMGKKKHRED Prediction of potential genes in microbial genomes Time: Wed May 25 19:57:09 2011 Seq name: gi|225002510|gb|ACIZ01000069.1| Lactobacillus rhamnosus LMS2-1 contig00072, whole genome shotgun sequence Length of sequence - 28724 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 10, operones - 3 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 8768 7202 ## LC705_01573 hypothetical protein - Prom 9002 - 9061 6.7 - Term 9374 - 9417 5.0 2 2 Tu 1 . - CDS 9527 - 10537 666 ## LC705_01574 hypothetical protein - Prom 10614 - 10673 1.6 3 3 Tu 1 . - CDS 10712 - 11506 690 ## COG3741 N-formylglutamate amidohydrolase - Prom 11531 - 11590 1.5 - Term 11591 - 11633 6.0 4 4 Op 1 . - CDS 11675 - 11992 305 ## LGG_01595 GTP cyclohydrolase I 5 4 Op 2 . - CDS 12008 - 12508 654 ## COG2606 Uncharacterized conserved protein 6 4 Op 3 7/0.000 - CDS 12587 - 13114 567 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 7 4 Op 4 . - CDS 13111 - 15405 1893 ## COG0608 Single-stranded DNA-specific exonuclease - Prom 15426 - 15485 4.9 + Prom 15498 - 15557 4.0 8 5 Tu 1 . + CDS 15720 - 16091 547 ## LGG_01599 hypothetical protein + Term 16101 - 16150 12.0 + Prom 16220 - 16279 6.6 9 6 Op 1 . + CDS 16299 - 16775 508 ## COG4405 Uncharacterized protein conserved in bacteria 10 6 Op 2 . + CDS 16781 - 16999 311 ## LC705_01582 hypothetical protein + Term 17021 - 17074 10.2 - Term 17152 - 17189 -0.7 11 7 Tu 1 . - CDS 17190 - 19028 1596 ## COG0481 Membrane GTPase LepA - Prom 19165 - 19224 4.9 - Term 19208 - 19253 6.5 12 8 Tu 1 31/0.000 - CDS 19302 - 20462 976 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Prom 20497 - 20556 4.2 - Term 20504 - 20566 19.6 13 9 Op 1 29/0.000 - CDS 20575 - 22434 2012 ## COG0443 Molecular chaperone 14 9 Op 2 21/0.000 - CDS 22464 - 23057 687 ## COG0576 Molecular chaperone GrpE (heat shock protein) 15 9 Op 3 5/0.000 - CDS 23127 - 24173 955 ## COG1420 Transcriptional regulator of heat shock gene - Prom 24219 - 24278 6.0 16 9 Op 4 . - CDS 24331 - 25476 875 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 17 9 Op 5 12/0.000 - CDS 25478 - 26425 620 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 18 9 Op 6 . - CDS 26433 - 27338 749 ## COG0130 Pseudouridine synthase - Term 27361 - 27393 -0.9 19 9 Op 7 . - CDS 27414 - 28052 411 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance - Prom 28258 - 28317 5.2 - Term 28292 - 28332 6.0 20 10 Tu 1 . - CDS 28343 - 28696 469 ## COG0858 Ribosome-binding factor A Predicted protein(s) >gi|225002510|gb|ACIZ01000069.1| GENE 1 2 - 8768 7202 2922 aa, chain - ## HITS:1 COG:no KEGG:LC705_01573 NR:ns ## KEGG: LC705_01573 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 2885 1 2885 3390 1776 99.0 0 MGKFIKKKPSTKTANFKMYKAGKHWLFTFSTLTFLAGGAGFVFSGNQAVHADSNDNQRVI DAASAQTAASIHTAPTAPSTASSSATTATPATAAATVTNATPAETTITTQPKVEKQQQTQ QAVASAEIPVAKTEASSSATNSVVSSAAPSSAAPVAKAAVQSSNATTSAAAGITVAASSS TSSATSIAVTQAAAPASSETENNHTKNVVVSKTLAAMPVVDDAGTPSTVVFTKTNPRGTA TVTAPNVSIFAGDTSIDKVVDSNFTAFGNGSLATFTLAPNWVITGSTAANNIDYTHPLNP FASDGLLGPFLTFQNSAGTVGDMLASQVGRPNDANVPIWIAGSSYKTPGVYAVQYSINTN QTKPLVGPFNGTLFSYFLVTVKSALNPDSDAAIAASAAVTASGALTKANSASSIASSASG AANGASDQVASLATANPDNQSLAYLSKTASSATAVASSYAVAASSDAAFAKQAVATVNAA NTTASSAAAAAKAASAAGKTDEATSLAKQAADAAATASQQAPIANSAADKALSEANAASS AAEDALNAAKSAATIAGSTSSTAAAKSNASLAADTGSKAYDKANLASTVANSASAIASTA IETATSAKAVVDKAASAYPTNESLAKLSATASTATSMTASYAASAFASNSQASDLAGKVK SANDTVISAVAQTNAALAAKNLPDASSYATIASSAASLASQLADQTSTAASNALASALAA SENAKIVTSAASEAAKLSASLGTTTGSTAADSKNASLAYTAATSASTEANNASAIAKTAS TTASSANAAASGFASSFPDNASLASLAVKVGQAASLTSSFATSASAFASQASDLATRVSD ANSQAQEAANKVTSAANAGDAAGVALYSGQASTAASNATDLANQTKSAASSAMSYALQAK SQAAIASDAATVASGIAGNLKSAAAGDAGVGSTVARSASVVASTASTVANNASTIASNAS AVALSAKNLTSSAASSFPQDSSLAALSTTASSAQAVASDYAAKASSAAFAASSYAGQTSS ANEGAKRAASLANEALTAGQNDAAARFGSQAKDAGNLASSLADNANTAASLAQSEALQAK SAADEASKAALSAQGRVATLASDTTKDTSAASDKASAASVAAKSASTVANNASTVASTAI SVASSANNVTASLTATYPKDPSLTSLSAVASSANSTTAGFAKSAAADAAAASSLAQKVVA ANKEASLAASQANSAIAGGDLQAASSFKAQAVTAASSAADLASQANGLANQASTEADQAN STAAIASQAASSAIELAGSLAKATSDTAEKASSVATSASVVASAASITANSAKSIAVAAS NKAKSAGDVAASVATRFPKDQSVASLATAAGNAVSLASSYAAGAIEDASLASSYATAASQ ANGVASETASLANSAYVNGNISEASSYAASASKAATEASSAADKGKNAATKALSEAYAAS SAANDAASIAVAASTAASSLASSITSGNTAASDKASAASDAARSASVVASTASVKANSAN AIASTASSVAASGYQDASNIATRYPGNPSLTSLATVASSANSETADLAKSASSDASAASS YAAIASAANSKAASAASRANTALDAGDLSNASSLADQASIAGVTASSAADKANSAADQAL NEANLASEKAKVAVSAAATARDVASKADASATAYTASSATAIANNASAIASNASSVADSA YQEASAKASNYPSNNSLASLAKTASDANSVAASYALTASADASAASSFADQVSSANATAK TAAAQATAASQRGDHTAAQNLNNQASAAADIASEYADKANDAAGKALSEANKADSAASQA VSANNRAKQIADTVSAANDQASSKASQASESALSASVVAQEASATANNASAIASAASDTA KSANAIASSAASRFPGNDSLASLAKTANDATIQASSYATQASATAGSAVSLAKVTSSANL AASKAASQANSAIVAGNMSQASTFANQASNFAKIASSAADAASSTADDAMSAALQAKGQA AIASSAADDSKRLAGNIATLGDRLVSDATKAADRAKASGDIAESAAVKYPSDTAITSANN VANQAADEASDSADSAKSAAQSGDIPAASSAAAEAKSHASQASIAADLASSLAVVHDKDA KSYAANAVKSASLASSSADVATAVGSQYPDDPTISRASSVAQQAAKDASLAADAAEDAAA RGDDASASSAADIAKSAADQADAAAKTALKTADSIAAAKKAAATSFAGDAAQAASQASSS ADVATSAATKYPDEPEIQTATDSASAAAAKASSAADTARSAARTGDDIAASVAASNAKTA ATEASTAAAKTSAAAKAKSTAASSYANEATKAASQAGSSANVAGKAATKYPNDSSIGAAT ELAKSAADTASSAATDAKRATQAGDDVTASQAADSAKSAAIVASQAASQASDAAKAKATA ASSFADDAVKAAGQAGSSADGAVSVATKYPNDPNIKANTDVATSAADIAKSAATDAKSAA QAGDDAKASSAAATAKSAAIVASTAAAKTSDAAKAKNVAASNYATDAAQSASLANSSAQL AESAGANYPEDAGIAAATSLSRSAASTATSAANDAKYAALDGQDDAAKSAAEVAKSAATV ASDAAAKVIAAAKAKGDAASSYASAADQSAKQASSSADQAGSAAAKYPEDPAIKSSADLA KSAADDAAKSAAAAKDAAKSGDDSRASSAAAGAKSSADLASSAAAKAAGDAKAKDDAKAQ ADAKAKGEAASSYASAADQSAKQASSSADQAGSAATKYPEDPAIKSATDLAKSAADDAAK SAAAAKDAAKSGDDSRASSAAAGAKSSADLASSAAAKAAGDAKAKDDAKAQADAKAKGEA ASSYASAADQSAKQASSSADQAGSAATKYPEDPAIKSSADLAKSAADDAAKSAAAAKDAA KSGDDSRASSAAAGAKSSADLASSAAAKAAGDAKAKDDAKAQ >gi|225002510|gb|ACIZ01000069.1| GENE 2 9527 - 10537 666 336 aa, chain - ## HITS:1 COG:no KEGG:LC705_01574 NR:ns ## KEGG: LC705_01574 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 336 1 336 336 664 99.0 0 MNFFGKKQGSPSGDEVIADGTNDIRFDDAKNDYLYLDLLPEEMPDEQWAKIKVMMNFFKT NHHSPAVITGDLELDATARFLNYRDKKQLFLAPTSYHNFYDELHHRGSGNSSHANLASQL QAHLTAKTVPGSKNTRYMDAENQVVLKIERDRKKRVRQISYFKDGRLTREDQYDDHERLF VSDYYAQMPNLQRMTLTEPLFQTTSIQGLILNRSGVAVVNGLPLTQQYWLNNSAGEPIKL FTDMNEILVWWLVNNFVHTDRKLYVDVSSEIFLALVQLPEMQSHLIPIVHDGADAKALQT MSTSAFLISQQFSSVAKQLQQSRDVKVIESWYQFMS >gi|225002510|gb|ACIZ01000069.1| GENE 3 10712 - 11506 690 264 aa, chain - ## HITS:1 COG:PA5091 KEGG:ns NR:ns ## COG: PA5091 COG3741 # Protein_GI_number: 15600284 # Func_class: E Amino acid transport and metabolism # Function: N-formylglutamate amidohydrolase # Organism: Pseudomonas aeruginosa # 18 232 13 234 266 99 33.0 7e-21 MDISNQFYTVLNSEQHSPVVISLPHSGTWLPVAMKKALLPNAVLANTDWFLPELYDFLPA AGLTTLINHVNRYVADPNRAVTYDPQHDYRSATVYQRNTFDHDLYAQPLTIPQIQARVRS YYRPYRQMLTTLLNQKKAEFGYAYLVDLHSFAQYPYYPNVKPKTIVLGNDHDRTASKRFR LALADQFMTYGWTVEDNFPFRGGDITRYYGHKQGVTAIQIELRYDQYIAHRSFGEEALTT YQSEVFKQAQQKLQFLTAFLGRLR >gi|225002510|gb|ACIZ01000069.1| GENE 4 11675 - 11992 305 105 aa, chain - ## HITS:1 COG:no KEGG:LGG_01595 NR:ns ## KEGG: LGG_01595 # Name: folE # Def: GTP cyclohydrolase I # Organism: L.rhamnosus # Pathway: not_defined # 1 105 1 105 105 210 100.0 2e-53 MFAANHSRFATFGVISNLPGEIIDSIWLIIDRNLQGVVPLNNLLRFDLQNHQGKLTIHFS EEGAQTEMSVDLPFPYDPSFPDTVMAYDDGESQTILLPEEGHRES >gi|225002510|gb|ACIZ01000069.1| GENE 5 12008 - 12508 654 166 aa, chain - ## HITS:1 COG:L115671 KEGG:ns NR:ns ## COG: L115671 COG2606 # Protein_GI_number: 15672298 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 162 1 156 158 151 50.0 6e-37 MAKHHKTDKTLVEKMLDKAGIAYVPYEFPTEEVGDVAQLTVDHLDVPEHQIYKTLVLTGN KTGPVIGVVPLDRHVDYKKLSKVSGNRKVGMVPLKDLMKTTGYEHGANTPIGIHERHKYP IYISQEAESQSSIIVSAGKIGRSVGVDPKVLAKFVDAEFADIATQD >gi|225002510|gb|ACIZ01000069.1| GENE 6 12587 - 13114 567 175 aa, chain - ## HITS:1 COG:L22735 KEGG:ns NR:ns ## COG: L22735 COG0503 # Protein_GI_number: 15672615 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Lactococcus lactis # 3 172 16 185 185 235 65.0 3e-62 MTINFKDYIASVKDFPEPGIIFRDISPLMADGKAYAAATDEIAAYAQDKGVEMIVGPEAR GFIVGCPVAYKLGIGFAPARKKGKLPRPTVKASYDLEYGEATLYLHKDAIKPGQRVLVCD DLLATGGTIAATIRLVEQLGGVVVGTAFLIELSDLHGRDKIKDYDMFTLMSYTGA >gi|225002510|gb|ACIZ01000069.1| GENE 7 13111 - 15405 1893 764 aa, chain - ## HITS:1 COG:L0259_1 KEGG:ns NR:ns ## COG: L0259_1 COG0608 # Protein_GI_number: 15672614 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Lactococcus lactis # 3 555 5 554 558 466 44.0 1e-131 MTQYQWQLAEQPDPATTQQLSQTLAVPPFLATLLWQRGIKNKPDYEAFVHPDISRLHDPF ALHDMDKAVARILEAIEQDQKITIYGDYDVDGLTSSSIMLETLQSLGAEPDVFIPDRFTD GYGPNAEVYTYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPETLPHAVA VVHPRHPEGHYPFGDLSGAGVAFKVATALLGEPPLESIDLAALGTIADLVKLTDENRIIA QLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRMGDANPGVTLLTT FEEDVAAELAQQVGKLNQERQGLVSKIAQEALTMAQTPENQAAKTLLLASKGWHEGVVGI VASKVVEATGKPTLIMNIADNGVTAKGSGRSIEAYHLFNALEPAKDKMVHFGGHHMAVGL TAKTAELSAIHAQMEAAASTMLKTVPKPALPIAARLEVGDLTLEHYELIRQLAPFGQGNP EPTFSVRPQVVQNVKPIGKENAHLRFQIDQGVNVIGFGFGSAAATLAEAQAIKLAVQLDQ NTWQGNTSLQLMLKDYAVKQPQVVDWRMPTVDGSQFKAQRNYVFFDAKVKQQFEHQFSFG GPTMLAEQVTTSLADAVLVDLPKDRGQLVTVMQHIQLPVTVMFYGAPSRLVAMPTRSEFG AVLHFLKAHPGFDKHHIPAIAKAVHLTVHQVILAIQVFFELDFVTIEGAFISPVTAPAKK PLQTAKAYVAREAFLTLARQLQTMPRVQLETMLVTEHSDSEVGS >gi|225002510|gb|ACIZ01000069.1| GENE 8 15720 - 16091 547 123 aa, chain + ## HITS:1 COG:no KEGG:LGG_01599 NR:ns ## KEGG: LGG_01599 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 123 1 123 123 197 100.0 1e-49 MAKSQDQFNEKAGKKITVSDEAVDKAAKKIEQVGYVTEKDVPEMIDRDYTRALSKKVSAK LHQDKDDDYFYEEPFDYENGRIANIIWDMDKIKTREEAMKTLANELGLTVPKIVMRKVDE QVF >gi|225002510|gb|ACIZ01000069.1| GENE 9 16299 - 16775 508 158 aa, chain + ## HITS:1 COG:SP0796 KEGG:ns NR:ns ## COG: SP0796 COG4405 # Protein_GI_number: 15900689 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 27 154 22 146 146 108 46.0 5e-24 MADQQVLDDFFATAKAALDLPAATYEDAYQLGSPELADELADLVKAGKKTATSSGFELYT IEQDPLPIAGVYNIILDRHDRPVALTFTDNVFVTPFEKVDAVIAKREGEGSQSLASWRRA HEAFFRREYQANGLQFDPESSMVVIEEFHTVYPVVQTR >gi|225002510|gb|ACIZ01000069.1| GENE 10 16781 - 16999 311 72 aa, chain + ## HITS:1 COG:no KEGG:LC705_01582 NR:ns ## KEGG: LC705_01582 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 72 1 72 72 135 100.0 5e-31 MRLKQRTTLAEKKVTGKLEDIPHPTLDATIYVLVFGLTAIGGLVSYGAYQLFKPERQLAH KAKDMVQEHRKN >gi|225002510|gb|ACIZ01000069.1| GENE 11 17190 - 19028 1596 612 aa, chain - ## HITS:1 COG:L0159 KEGG:ns NR:ns ## COG: L0159 COG0481 # Protein_GI_number: 15673090 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Lactococcus lactis # 1 607 1 607 607 927 75.0 0 MNHEEMLERQKHIRNFSIIAHIDHGKSTLADRILELTDTIAKRDMQAQVLDDMALERERG ITIKLNAVELHYKAKNGETYIFHLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQ TLANVYLAIDDDLEIIPVINKVDLPSAQPDVVKEEIEEMIGLDASDAILASGKTGLGVPE ILERIVSDIPAPSGDVNAPLQALIFDSVYDDYRGVVLDVRVKEGQVKVGDTIQLMSNGKQ FQVTEVGVMSPKAVKRDFLMVGDVGYITASIKTIQDTRVGDTVTLADRPAAAPLKGYRKI TPMVYSGLFPVDNAKFNDLREALEKLQLNDAALEFEPETSQALGFGFRCGFLGLLHMDVV QERLERDYGLDLIMTAPSVDYQVALTDGSEKTIDNPAEMPDASEIKEIREPYVKASIMVP NDYVGPVMELSQRKRGEFVTMDYLDKYRVNVIYELPLSEIIYDFFDDLKSSTKGYASLDY EIIGYRQSDLVKMDILLNGDPVDALSTIVHKDFAFERGKAIVARLKTTIPRQQFEIPIQA AIGNKIIARSTVKAYRKNVLAKCYGGDITRKRKLLEKQKAGKKRMKAVGSVEVPQEAFMS ILKMNDEESRGK >gi|225002510|gb|ACIZ01000069.1| GENE 12 19302 - 20462 976 386 aa, chain - ## HITS:1 COG:L0272 KEGG:ns NR:ns ## COG: L0272 COG0484 # Protein_GI_number: 15674206 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Lactococcus lactis # 3 368 2 367 379 412 63.0 1e-115 MADQKDYYETLGVSRDADDDTIRKAFRKLSKKYHPDLNHAPGAEQKFKEVNEAYQVLSDP QKRAAYDQYGSADGPQGFGNGGQAGGFSDFGGGQGGFGGFDDIFSQFFGGAGGGAQANPS APRQGADLQYRMDLTFEEAIFGKDTKISYDREAVCHTCHGSGAKPGTSPVTCHKCHGSGY IQVQRNTAFGAMMTRQVCDVCGGTGKEIKEKCPTCHGTGHEQERHTIDVKVPAGVEDGQQ MRLQQAGEAGTNGGPYGDLYIVFRVAPSKKYQRDGAEIYLTIPLSFAQAALGDEIKVDTV HGPVELKIPAGTQSQTKFRLRGKGAPRLRGNGTGDEIVTVEIQTPKHLNEKQKAALMQFA AASGEDVTPHNGTLFDRVKEAFKGGK >gi|225002510|gb|ACIZ01000069.1| GENE 13 20575 - 22434 2012 619 aa, chain - ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 619 1 610 611 805 73.0 0 MSKVIGIDLGTTNSAVAVLEGNQPKIITNPEGNRTTPSVVAFKDGEIQVGEVAKRQAITN PDTIVSIKRHMGEANYKVKVGDKEYTPQEISAMILQYIKKFSEDYLGEPVKDAVITVPAY FNDSQRQATKDAGKIAGLNVQRIINEPTASALAYGLDKGDKDEKILVYDLGGGTFDVSIL QLGDGVFEVLSTNGDTHLGGDDFDNKIIDWLVSEFKKDNNIDLSKDKMAMQRLKDAAEKA KKDLSGVTQTQISLPFISAGPNGPLHLERTLTRAQFDEMTADLVAKTKVPVENALKDAKL TNADIDKVILNGGSTRIPAVQQAVKEWTGKDPDHSINPDEAVALGAAVQGGVISGDVKDV VLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAA DDKTLGRFELTDIPPAPRGVPQIEVKFDIDKNGIVQVSAKDLGTGKSQNITIKSSSGLSD EEIERMKKEAEENAEADEKRKEEVDLKNDVDQLLFQTDKTLKDVDGKVPEEDVKKVKDAQ EALKKAQQENNLDDMKQKRDDLNKLVQDMTVKLYENAQKNQQAQGGATSGAAQGTADDKK SDDDTINGDYKDVSDDDKK >gi|225002510|gb|ACIZ01000069.1| GENE 14 22464 - 23057 687 197 aa, chain - ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 42 195 23 172 174 121 52.0 8e-28 MAEQKAKQTAADTAKDAKHAADTPETSLKEEILQESIADLNEQLKTSKHDGEQLKQERDA FEDKYLRAAAEIQNMNARFEKEQQKMLKYDGQKLAKAILPVVDNLERALATEAKDDSAAS LKKGVQMVYDHLERALKENGITAIDGAGDKFDPNTQQAVQTVAADDQHPADTVAQVLQKG YYLKDRVLRPAMVVVAK >gi|225002510|gb|ACIZ01000069.1| GENE 15 23127 - 24173 955 348 aa, chain - ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 343 1 340 345 260 39.0 4e-69 MLTKRQLLVLKEIIRLFTESGQPVGSKTLMQELPVHVSSATIRNDMASLEDAGLITKTHS SSGRVPSTQGYRYYLDHLVEPVRVSHRELATIKQAFGQRYNKMDEIVAQSAQILSNLTSY TAISLGPEVNNIKLTGFRLVPLGNHQVMAILVTNNGNVENQVFTVPESISSDELEKAIRI VNDQLVGLPLIQVAQRLKTDVPSMLMQYLTSPEGFLDIFGNVLKSAASERFYVGGRLNLM DYLGDSDIHELKKIMSLIDADHGDLTELLGGPVRQTPVTVRLGPELKPIDLANLSLITAS YDVGDHGTGMIALLGPTQMPYSKMIGLLDVFREELAKRLTDYYANFDQ >gi|225002510|gb|ACIZ01000069.1| GENE 16 24331 - 25476 875 381 aa, chain - ## HITS:1 COG:lin1513 KEGG:ns NR:ns ## COG: lin1513 COG0635 # Protein_GI_number: 16800581 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Listeria innocua # 2 375 12 385 385 456 56.0 1e-128 MAGAYIHIPFCEHICYYCDFNKVFIEGQPVDDYVAMLLKEMRMVMAEHPEEKIETVYVGG GTPTTLTPQQLAVLCQGIRDILHFDHGEFTFEANPNDLLTTDKLQVLHDFGVNRLSIGVQ SFNDDVLKRIGRIHRAKDVYTAIGNARKVGFDNLSIDLIFRLPDQSRDDFLNSLQKALAL DLPHYSTYSLILERKTIFYNLMRQGKLRLPTQDVEADMYQDAIDLMEAHGRHQYEISNFA KTGYQCRHNLLYWQNDKYFGFGAGAFGYLGRDRYHNYGPIKQYLAPLHADHLPVLAHHLV PVSEQIEEEMFLGLRTMAGVNEDRFYRRYHMTVDAVYGETVPELESQGLIERQNGYIRLT NRGKFLGNEVFQQFLLDEPLV >gi|225002510|gb|ACIZ01000069.1| GENE 17 25478 - 26425 620 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 313 1 315 317 243 43 1e-63 MKVIDIQPPLQASAAPPQPIVLTLGFFDGVHRGHQAVIQAGKRVALAKKLPLAVMTFDMH PAIVYRGVAKTAIRYLSTREEKIALMQQFGVDLLYFVHFTPAFAALSPQAFVDDYLVGLK AAAVVAGFDYTYGKRAVANMALLPEYARGRFEVVSVPKLAEDGKKISSTRIRDALDRGDI DTANELLGYVYLTTGKVVHGEARGRLLGFPTINLTTLGQQRLPGIGIYAVTVKVDDTWYL GMASIGRNVTFGDDRAVTLEINLLDFNQMIYGKTVQVRWYHYLRGEVKFAGADALIAQLK TDEQTVRQYFRVRKD >gi|225002510|gb|ACIZ01000069.1| GENE 18 26433 - 27338 749 301 aa, chain - ## HITS:1 COG:L0328 KEGG:ns NR:ns ## COG: L0328 COG0130 # Protein_GI_number: 15673108 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Lactococcus lactis # 1 258 5 262 329 261 49.0 8e-70 MNGILPLYKPVGMTSADAVYHARKILHIKKIGHSGTLDPSVDGVLPLAIGAATKAVPQLM ASGKVYTGEITLGFATTTEDLDGDVVTRTPLANPITQAELDQALRQWTGEITQIPPMFSA VKVNGKRLYEYARRGETVERPKRQVTVKQFKRTSEPIFDPKQGTQRFKFEAAVSKGTYIR TLAVDVGRTLGVAAVMSQLTRIKSGGFTLAQAVSLADLEQHAKIGTLSAVIQPIDIAFAA LPQVDLTPEQYEDVTHGRFLTLKLQAPRIRLHYAGVLKAIYRLDHDQYRPDMMFLTNEKN E >gi|225002510|gb|ACIZ01000069.1| GENE 19 27414 - 28052 411 212 aa, chain - ## HITS:1 COG:CAC1415 KEGG:ns NR:ns ## COG: CAC1415 COG0861 # Protein_GI_number: 15894694 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Clostridium acetobutylicum # 1 189 42 226 246 153 45.0 3e-37 MLSVDNAVVLAAQTEQLKVESERKKALMYGMGGAYLFRFIAIGLGTYLLQFWPIKAVGAL YLVWMSGSYFYAVRHPKSNTATHKHKTHGLWGTILQIESLDIVFSVDSILAALAVSPNPV IVLIGGCLGILAMRIVAQVITTFIDRVPELETAAYVLVGLIAIKLGLSLPMIHVETPDWL FSVLVVVIFIWAGWRHAVHARHHHSMYTKPKS >gi|225002510|gb|ACIZ01000069.1| GENE 20 28343 - 28696 469 117 aa, chain - ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 3 115 6 118 118 108 48.0 2e-24 MKHRIGRVETQIQREVDDILLKDVNDPRVKGVTITGVKLTGDLQHATIFYSILDDAPDKV EAAQTGLDKASGLIRREVGQRIRLFKVPEIEFAQDKSVQYGARIDQLINEVRRKNLE Prediction of potential genes in microbial genomes Time: Wed May 25 19:58:39 2011 Seq name: gi|225002509|gb|ACIZ01000070.1| Lactobacillus rhamnosus LMS2-1 contig00073, whole genome shotgun sequence Length of sequence - 69114 bp Number of predicted genes - 68, with homology - 68 Number of transcription units - 15, operones - 12 average op.length - 5.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 123 - 154 0.0 1 1 Op 1 10/0.000 - CDS 169 - 2958 2437 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 2 1 Op 2 8/0.000 - CDS 2979 - 3278 472 ## PROTEIN SUPPORTED gi|199597098|ref|ZP_03210530.1| Ribosomal protein HS6-type (S12/L30/L7a) 3 1 Op 3 22/0.000 - CDS 3281 - 3574 424 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 4 1 Op 4 32/0.000 - CDS 3586 - 4800 758 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 5 1 Op 5 4/0.000 - CDS 4817 - 5296 569 ## COG0779 Uncharacterized protein conserved in bacteria - Prom 5427 - 5486 3.8 - Term 5494 - 5533 -0.2 6 1 Op 6 5/0.000 - CDS 5550 - 9884 3450 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 7 1 Op 7 7/0.000 - CDS 10006 - 11736 1594 ## COG0442 Prolyl-tRNA synthetase 8 1 Op 8 12/0.000 - CDS 11760 - 13001 928 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 9 1 Op 9 32/0.000 - CDS 13018 - 13806 700 ## COG0575 CDP-diglyceride synthetase 10 1 Op 10 19/0.000 - CDS 13842 - 14594 651 ## COG0020 Undecaprenyl pyrophosphate synthase - Prom 14642 - 14701 3.9 - Term 14903 - 14946 5.1 11 1 Op 11 33/0.000 - CDS 14969 - 15526 605 ## COG0233 Ribosome recycling factor 12 1 Op 12 24/0.000 - CDS 15526 - 16245 650 ## COG0528 Uridylate kinase - Prom 16270 - 16329 4.1 13 1 Op 13 38/0.000 - CDS 16614 - 17495 556 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts - Term 17512 - 17564 7.0 14 1 Op 14 . - CDS 17580 - 18368 1344 ## PROTEIN SUPPORTED gi|199597110|ref|ZP_03210542.1| Ribosomal protein S2 15 2 Op 1 6/0.000 - CDS 18508 - 18789 220 ## COG2827 Predicted endonuclease containing a URI domain 16 2 Op 2 . - CDS 18779 - 19513 695 ## COG4123 Predicted O-methyltransferase - Prom 19636 - 19695 4.4 + Prom 19636 - 19695 4.6 17 3 Op 1 1/0.500 + CDS 19726 - 20376 534 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 20377 - 20405 -1.0 18 3 Op 2 . + CDS 20434 - 21828 1082 ## COG0531 Amino acid transporters 19 3 Op 3 . + CDS 21853 - 22635 637 ## COG4420 Predicted membrane protein + Term 22638 - 22690 15.0 - Term 22623 - 22679 19.0 20 4 Op 1 35/0.000 - CDS 22699 - 24501 1428 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 21 4 Op 2 . - CDS 24491 - 26248 172 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Prom 26275 - 26334 4.2 - Term 26384 - 26426 8.6 22 5 Op 1 . - CDS 26439 - 26660 295 ## COG3763 Uncharacterized protein conserved in bacteria 23 5 Op 2 . - CDS 26721 - 26966 350 ## LGG_01637 cytosolic protein - Term 27018 - 27051 -1.0 24 6 Tu 1 . - CDS 27109 - 27285 232 ## LGG_01638 hypothetical protein - Prom 27345 - 27404 2.0 - Term 27483 - 27539 21.1 25 7 Op 1 33/0.000 - CDS 27613 - 27993 639 ## PROTEIN SUPPORTED gi|229552441|ref|ZP_04441166.1| 50S ribosomal protein L19 - Prom 28033 - 28092 5.1 26 7 Op 2 30/0.000 - CDS 28165 - 28950 809 ## COG0336 tRNA-(guanine-N1)-methyltransferase 27 7 Op 3 12/0.000 - CDS 28940 - 29458 185 ## PROTEIN SUPPORTED gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 - Term 29488 - 29522 5.1 28 7 Op 4 19/0.000 - CDS 29526 - 29780 271 ## COG1837 Predicted RNA-binding protein (contains KH domain) 29 7 Op 5 23/0.000 - CDS 29793 - 30107 531 ## PROTEIN SUPPORTED gi|227534904|ref|ZP_03964953.1| ribosomal protein S16 30 7 Op 6 8/0.000 - CDS 30164 - 31600 1253 ## COG0541 Signal recognition particle GTPase 31 7 Op 7 . - CDS 31613 - 31954 487 ## COG2739 Uncharacterized protein conserved in bacteria - Prom 32019 - 32078 9.9 32 8 Op 1 . + CDS 32360 - 32551 231 ## LC705_01628 hypothetical protein 33 8 Op 2 . + CDS 32618 - 32932 381 ## LSEI_1604 hypothetical protein + Term 32957 - 32999 9.1 - Term 32938 - 32991 16.2 34 9 Op 1 10/0.000 - CDS 33004 - 33999 898 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 35 9 Op 2 6/0.000 - CDS 33999 - 37553 3298 ## COG1196 Chromosome segregation ATPases 36 9 Op 3 . - CDS 37573 - 38268 744 ## COG0571 dsRNA-specific ribonuclease - Prom 38292 - 38351 6.2 - Term 38310 - 38344 3.1 37 10 Op 1 5/0.000 - CDS 38370 - 40163 1526 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 40220 - 40279 5.2 - Term 40282 - 40323 4.1 38 10 Op 2 49/0.000 - CDS 40353 - 41264 692 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 39 10 Op 3 6/0.000 - CDS 41281 - 42243 710 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 40 10 Op 4 44/0.000 - CDS 42243 - 43196 728 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 41 10 Op 5 . - CDS 43199 - 44221 893 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component - Prom 44424 - 44483 9.2 + Prom 44230 - 44289 5.5 42 11 Tu 1 . + CDS 44314 - 44478 75 ## LC705_01638 hypothetical protein + Term 44524 - 44556 -0.6 - Term 44464 - 44508 6.5 43 12 Op 1 3/0.000 - CDS 44511 - 44753 296 ## COG0236 Acyl carrier protein 44 12 Op 2 . - CDS 44807 - 45832 1122 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 45 12 Op 3 4/0.000 - CDS 45856 - 47895 1710 ## COG1200 RecG-like helicase - Term 47954 - 47985 3.2 46 12 Op 4 9/0.000 - CDS 48008 - 49684 1511 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 47 12 Op 5 3/0.000 - CDS 49745 - 50107 445 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 50146 - 50205 3.9 - Term 50261 - 50314 16.4 48 12 Op 6 . - CDS 50333 - 50518 311 ## PROTEIN SUPPORTED gi|199597144|ref|ZP_03210576.1| Ribosomal protein L28 - Prom 50566 - 50625 2.8 49 13 Op 1 6/0.000 - CDS 50673 - 51341 493 ## COG1564 Thiamine pyrophosphokinase 50 13 Op 2 10/0.000 - CDS 51338 - 51988 740 ## COG0036 Pentose-5-phosphate-3-epimerase 51 13 Op 3 7/0.000 - CDS 52016 - 52921 530 ## COG1162 Predicted GTPases 52 13 Op 4 17/0.000 - CDS 52918 - 54918 2014 ## COG0515 Serine/threonine protein kinase 53 13 Op 5 3/0.000 - CDS 54915 - 55658 627 ## COG0631 Serine/threonine protein phosphatase 54 13 Op 6 20/0.000 - CDS 55668 - 57008 1128 ## COG0144 tRNA and rRNA cytosine-C5-methylases 55 13 Op 7 4/0.000 - CDS 56995 - 57951 795 ## COG0223 Methionyl-tRNA formyltransferase 56 13 Op 8 . - CDS 58010 - 60427 1516 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 57 13 Op 9 . - CDS 60432 - 60605 128 ## LC705_01653 phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase 58 13 Op 10 10/0.000 - CDS 60602 - 61630 774 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase - Prom 61656 - 61715 5.4 - Term 61748 - 61791 2.0 59 13 Op 11 25/0.000 - CDS 61820 - 62062 386 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 60 13 Op 12 . - CDS 62121 - 62747 647 ## COG0194 Guanylate kinase 61 13 Op 13 . - CDS 62814 - 63497 383 ## LC705_01656 esterase of the alpha-beta hydrolase superfamily - Prom 63615 - 63674 2.6 + Prom 63540 - 63599 6.9 62 14 Tu 1 . + CDS 63625 - 63927 197 ## LGG_01676 hypothetical protein + Term 63964 - 64010 0.3 - Term 64010 - 64055 0.7 63 15 Op 1 8/0.000 - CDS 64072 - 65775 1489 ## COG0497 ATPase involved in DNA repair 64 15 Op 2 6/0.000 - CDS 65780 - 66232 429 ## COG1438 Arginine repressor - Prom 66275 - 66334 2.8 65 15 Op 3 3/0.000 - CDS 66336 - 67166 701 ## COG1189 Predicted rRNA methylase 66 15 Op 4 . - CDS 67163 - 68014 901 ## COG0142 Geranylgeranyl pyrophosphate synthase 67 15 Op 5 . - CDS 68011 - 68238 363 ## LGG_01681 exodeoxyribonuclease VII small subunit 68 15 Op 6 . - CDS 68231 - 69112 631 ## COG1570 Exonuclease VII, large subunit Predicted protein(s) >gi|225002509|gb|ACIZ01000070.1| GENE 1 169 - 2958 2437 929 aa, chain - ## HITS:1 COG:SPy1721 KEGG:ns NR:ns ## COG: SPy1721 COG0532 # Protein_GI_number: 15675571 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Streptococcus pyogenes M1 GAS # 1 926 1 950 953 755 50.0 0 MGKKRVYEFAKEMHVDNKDVLDIAKNLGIEVKNHMSSIDQDQEAKIKGVLGKSAAAKAPA TSAAAKPAKSKAASAKDHAQNQSEKPVKHENKPAKSNKTADGKIILSKSTILRPRGTQTA HKAGNHSNQQTANANAGNRNNNRGNNNNRSANNNSNRSNDRNRRDRNRRFDNQRVTGPMP RAGRPTAANGNPRPVAGNGGKFVKPESERQQPKRQQTAKPAAASKRSESTEQRPQATRAQ QRPQTEQKPARTEQRPRTEQPAAQTNQRFTKPAVANTTAKPASAGSQDNRNSRRGGGNNN FGRGNSFGNRNGFNRNSNRRNKKNKRRQQSQPKKEMPQRKERPLPEVLNYEVGMNAQELG KILHREPAELIKKLFMLGVMVNQNQSLDKDTIELLATDYGIDAKEKVHEDISDLDKVFEE ENKNQDNLQPRPPVVTIMGHVDHGKTTLLDKLRHTHVTEGEAGGITQHIGAYQVKLRDRL ITFLDTPGHAAFTNMRARGADITDIVVLVVAADDGVMPQTIEAIHHAQAAKAPIIVAVNK IDKPGANPEHVMEQLTEYGLIPEDWGGDTIFVKISAKFGKNIDELLEMILLEADVLELKA NPDQRAVGTVIEARLDKGKGPVATVLVQQGTLHTGDPIVVGNTFGRVRAMTNDHGRRVKD ALPSMPVEITGLNDVPQSADKFVVFADERTARAAGEERAKRAQEEERKNTTHVTLDNLFE TMKEGQLKEVDVIIKADVQGSVEALAGSLKKIEVKGVRVNIIHQAVGAINESDVTLAAAS NAIIIGFNVRPTAMAKAQAEQDDVDIRLHSVIYKAIEEVEAAMKGMLEPTYEEKVIGTVT VRETIPVSKVGTVVGGYVDSGYITRDAGVRLIRDGIVKYEGKLGSLRRFKDDVKQVRQGF ELGLTIENYNDIKVGDEIEAFTMEEVPVK >gi|225002509|gb|ACIZ01000070.1| GENE 2 2979 - 3278 472 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|199597098|ref|ZP_03210530.1| Ribosomal protein HS6-type (S12/L30/L7a) [Lactobacillus rhamnosus HN001] # 1 99 1 99 99 186 100 3e-46 MQKQAVLNLLGLARRASRLTTGDQLVLSAIRSGEAKLVFVASDASANTRKKFSDKSSYYQ VPLVTMFSKMDLSQAIGSDRAMIAVTDAGFAKKMQELLT >gi|225002509|gb|ACIZ01000070.1| GENE 3 3281 - 3574 424 97 aa, chain - ## HITS:1 COG:SP0554 KEGG:ns NR:ns ## COG: SP0554 COG2740 # Protein_GI_number: 15900466 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Streptococcus pneumoniae TIGR4 # 1 94 1 94 97 96 54.0 1e-20 MKKRKIPMRKDLLSNTMMPKKELVRIVKNKEDVVAIDPTGKAAGRGAYVALDPDAVKRAK GKKLIDAAFGITIDPAFYDDLFAYVDHQKARQELFGK >gi|225002509|gb|ACIZ01000070.1| GENE 4 3586 - 4800 758 404 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 384 9 387 537 296 43 2e-79 MSKEMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVKFDPKQGDIHVYA VKEVTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVRE AERSIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKV YVTKVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRAT NDAVDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDE DNDRSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDDDELSEAEVEA AAAAAADDQDNASQAPSDSAEVDQANDEADETPVTPSTHDQPQA >gi|225002509|gb|ACIZ01000070.1| GENE 5 4817 - 5296 569 159 aa, chain - ## HITS:1 COG:lin1358 KEGG:ns NR:ns ## COG: lin1358 COG0779 # Protein_GI_number: 16800426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 159 4 155 155 157 51.0 9e-39 MSTQSVVETVTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDKPGGITLDECVLVSEA LSEQLDAINPDPIPQQYFLEVSSPGAERPLKRETDYEQAIGDYIHVSLFKKLDGKKVFEG TLKDLKPDQLTLTVKDKSRKFDQVIDRKLIASARLAIEF >gi|225002509|gb|ACIZ01000070.1| GENE 6 5550 - 9884 3450 1444 aa, chain - ## HITS:1 COG:lin1357 KEGG:ns NR:ns ## COG: lin1357 COG2176 # Protein_GI_number: 16800425 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Listeria innocua # 5 1440 8 1444 1444 1650 56.0 0 MALSQHEMFEKLMDQLDLPADVRHDPSLADGSVQEVTIHEQSQRYDFTLAFPTILPFQIF NTVATQLPIAFKQIAATRLTIAVAQPTITDELLAQYWQYVVQNSEIGTGIVRELCEKQVP TLVNNRAVITAENEQIRQYLVNQGLGKLEETYQQVGFSGLRMQAQVDEEQAAQSVAAFEA QKAAQTAKMAQAAAEVVKRQAAKQKQEPTNGPVQMGRQLKMSDPPQQMVTITQEERSVTV EGYVFDVEVRELRSKRQLLIFKITDYSSSFIAKKFSNGADDEAMFARIKKGQWLRVRGSV QEDNYSRELTINAQDIQTVSHPDPNDDVEGEKRVELHLHTNMSQMDATNSITDFVNRAKA WGHKAIAVTDHAGLQAYPEAHTAADKAGLKMLYGVEINLVDDGTPVAYRAEEPRVLADAE YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQFEEMIDPGFPLSELTINLTHITDDMV HGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLELSRML HPERKNHKLDTLAKQYKVSLEHHHRANADAEATGYLLYALEKEAAKMYNMTKLNQLNDRV GAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVKYFYRVPRVPRSQLQKLREGLLVG SACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQPPAVYQPLLEADLIKGESHLKDILQKI VKIGDDLEKPVVVTGDVHYLDQHDAIYRKILIHSQGGANPLNRHSLPDVHFRSTREMLDD FSWLGAEKAQKLVVTNSNLIADLIDDDITPVKDKLYTPEVPGVEEKLKHDVMATAYELYG NPLPEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVGSRGSVGSSLAATMAE ITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKTCPKCGTELHKDGHDIPFETFLGF HGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYVKAYERDTGQ QLRGAEIDRLAQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFD FHSIHDNILKMDVLGHDDPTMIRMLQDLSGVEPKSIPTDDPGVMALFSGTESLGVTPEQI NSKMGTLGIPEFGTRFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEELIKQGIVTL KEVIGCRDNIMMDLIHWGMDDSMAFNIMEHVRKGRGIPDDWQKAMRENENVPDWYIDSCL KIKYMFPKAHATAYILMALRIAWFKVHYPLVYYTAYFSVRAEDFDLAAMSHGKEAVKAAM KEITDKGMDASAKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHDFLIQDDHTILAPFR AVPGLGDNVAKQIVAAREEKPFLSKEDLANRGKVSKTLIDYMTTNHVLDDLPDENQLSLF DGLF >gi|225002509|gb|ACIZ01000070.1| GENE 7 10006 - 11736 1594 576 aa, chain - ## HITS:1 COG:lin1356 KEGG:ns NR:ns ## COG: lin1356 COG0442 # Protein_GI_number: 16800424 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Listeria innocua # 1 566 1 566 568 655 54.0 0 MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQVQAGVYAYLPLAERVLSRIEAIIDDE MTKIDAVKMKMPALLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLNTIYRQMEHA YTNIFDRLGLRYRTIIGDGGAMGGKDSKEFSAIASIGEDTIVYSDSSDYAANLEMATSMA LPKQGVEAQAELTPVDTKDAKTIAEVAALLKIPEQKLIKAVLFMADGAPVLALVRGDYEI NDTKLKNILGADFLEMATPEQVESVMHAEVGNIGPVNVDKDVRIIADNSLSGLTNLVAGA NKAHTHLLNVNFERDVNPETFADIRFVKEGEVSPDGQGVLKFTRGIEIGHIFKLGTRYSE TMGADFLDENGRSQPIIMGSYGIGVSRLLSAIAEQQADDHGLIWPTTIAPFDIHLIPVNL KREEQKTLTAAIGTMLEDAGYSVLVDDRNERPGVKFADSDLIGIPLRVTVGKKAVDEIVE LKLRKTGETIEVKKEELISSIKILMAQLHKQEQAKA >gi|225002509|gb|ACIZ01000070.1| GENE 8 11760 - 13001 928 413 aa, chain - ## HITS:1 COG:SPy1963 KEGG:ns NR:ns ## COG: SPy1963 COG0750 # Protein_GI_number: 15675761 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Streptococcus pyogenes M1 GAS # 14 413 14 418 419 362 50.0 1e-100 MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLP LGGYVRMAGWQDEEDEIKPGTMLSIILNDAGKVTRINASDKTTLAGGMPVQVSRVDLVKD LVIEGYPNGDEEKLERWSVDHDATIIEEDGTEVQIAPEDVQFQNAPVWRRLIVNFAGPMN NFILAILTFIIYGLMFGVQVLNTNQIGTVLPGYPAAQAGLKSNATIQAIDGEKIHSFTDL SSKVSKQAGKSVTFTVKEHGKTQNVVIKPNKDGKIGVEALIEKSPARAFTYGFTQTWDLA VRTWDVLKSMVTGGFSLNKLAGPVGIYTMTSQSAKGGLQGLLFFMGYLSLGLGISNLLPI PVLDGGKILLNLIELIRRKPLKPETEGVVTMVGLGLMVLLMLAVTINDIMRYF >gi|225002509|gb|ACIZ01000070.1| GENE 9 13018 - 13806 700 262 aa, chain - ## HITS:1 COG:lin1353 KEGG:ns NR:ns ## COG: lin1353 COG0575 # Protein_GI_number: 16800421 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Listeria innocua # 1 262 1 262 262 219 50.0 5e-57 MKQRVITAVVALAIFIPILIAGGGWIDTAGAVLALIALSEVYIMRKRIILSPDFLIASLG ILAVVLPNSFFRWLPAFLGRIDLIYIAVALLLCITVTTKNRTTFDDIGVSVLSFFYIGTG FHYLISVRNDAGLDTLMFALLIVWLTDTGAYMIGRKLGRHKLWPAISPNKTIEGSVGGVV LALVTAAIYLMFFPQYYTFWPMMGIALCLSVIGQIGDLIESALKRFYGVKDSGKILPGHG GILDRFDSLLLVLPMLHLFGIV >gi|225002509|gb|ACIZ01000070.1| GENE 10 13842 - 14594 651 250 aa, chain - ## HITS:1 COG:BS_yluA KEGG:ns NR:ns ## COG: BS_yluA COG0020 # Protein_GI_number: 16078716 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Bacillus subtilis # 14 248 29 260 260 300 61.0 2e-81 MAIAKGSKVKLDPARIPAHIAIIMDGNGRWAKRRLLPRVAGHKQGMQNVKTITKAASRLG VKVLTLYAFSTENWKRPGSEVNYLMRLPVDFFNDFMPDLIKENVKVEVMGELTDLPEPTR KASEKAMADTANNTGMILNFALNYGGRDELVHAARKLASAVRDGQLDPEDIDDQRFSDAL MTGFLGDLADPDLLIRTSGELRISNFLLWQIAYSELVFVDDYWPDFSPAALEAAIATYQA RDRRFGGLKK >gi|225002509|gb|ACIZ01000070.1| GENE 11 14969 - 15526 605 185 aa, chain - ## HITS:1 COG:SPy0463 KEGG:ns NR:ns ## COG: SPy0463 COG0233 # Protein_GI_number: 15674582 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Streptococcus pyogenes M1 GAS # 1 185 1 185 185 209 70.0 2e-54 MANQIIEQAKVNMGKTEESLQRELGNIRAGRANASLLNQITVDYYGAPTPLNQMAAITVP EARVLQISPYDKSSLKNIETAINASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKF SENAKIAIRNIRREGLDKLKRQEKDGDITEDELHRLEKDMQKATDDATKRIDEIAAAKEK EITEV >gi|225002509|gb|ACIZ01000070.1| GENE 12 15526 - 16245 650 239 aa, chain - ## HITS:1 COG:lin1350 KEGG:ns NR:ns ## COG: lin1350 COG0528 # Protein_GI_number: 16800418 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Listeria innocua # 4 238 6 241 242 330 73.0 1e-90 MVKYKRIILKISGEALAGEAGFGIKPPVIAKIAQQIKEVHELGVQIAIVCGGGNIWRGET NAEMGMERAQADYMGMLATVMNALALQDNLESQGVPTRVQTSIEMRQIAEPYIRRKAIRH LEKGRVVIFAGGTGNPYFSTDTTAALRAAEIGAEVILMAKNNVDGVYSADPNKDTNAVKY ESLTHMDIINKDLKVMDSTASTLSMDNDIDLVVFNLNEPGNIKRVVEGQKIGTTIEGRS >gi|225002509|gb|ACIZ01000070.1| GENE 13 16614 - 17495 556 293 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 287 1 275 283 218 44 5e-56 MAQITAAQVKELRDRTQVGMMDAKKALVAADGDMDKAIDVLREKGLAKAAKKSGNIAAEG LAEIAVDGNTAAIVEVNSETDFVASNDQFKDYVNKVAAAIAANKPADLDAAKATKMSDGQ TIDEGAIALTSVIGEKISLRRFQIVTKTDNEHFGAYLHNGGQIAALTVLDGADDATAKDV AMHVAAINPEYLDRSKVPADELQHQTDIFTEETKNEGKPEKIVPRIVEGRVNKWLSEISL VDQEFVKDPDQTVAKYVAAKGGKVKGYVRYEVGEGIEKKQENFADEVMDQIKG >gi|225002509|gb|ACIZ01000070.1| GENE 14 17580 - 18368 1344 262 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|199597110|ref|ZP_03210542.1| Ribosomal protein S2 [Lactobacillus rhamnosus HN001] # 1 262 1 262 262 522 100 1e-147 MAVLSMKQLLEAGVHFGHQTRRWNPKMKPYIFTERNGIYIIDLQKTVKMIDDAYNFVKEE AQNGGVFLFVGTKKQAQDAIAEEATRAGQFYVNHRWLGGTLTNWNTIQTRIKRLKDIKKM ATDGTFDVLPKKEVSLLKKQQDKLEKFLGGIEDMPRIPDVLFIVDPRKEKIAVQEAQKLN IPIVAMVDTNTDPDDIDVIIPSNDDAIRAVRLITSKMADAIIEGNQGEDQEDDQEQQPAA DKKADSMEDIVEAVEGDNKRAN >gi|225002509|gb|ACIZ01000070.1| GENE 15 18508 - 18789 220 93 aa, chain - ## HITS:1 COG:BS_yazA KEGG:ns NR:ns ## COG: BS_yazA COG2827 # Protein_GI_number: 16077103 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Bacillus subtilis # 1 81 1 81 99 88 50.0 3e-18 MATKPYYFYVLLCADGTFYGGFTDDVAARVATHNAGKGAKYTASRRPVRLLYHEAFADKH EALSAEWHFKHQSRRRKELFLSAHHVKWQGLSK >gi|225002509|gb|ACIZ01000070.1| GENE 16 18779 - 19513 695 244 aa, chain - ## HITS:1 COG:lin0208 KEGG:ns NR:ns ## COG: lin0208 COG4123 # Protein_GI_number: 16799285 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Listeria innocua # 1 244 4 248 250 230 46.0 2e-60 MSLLPGERVDVLASRHIKIIQSGAVFSFSLDAVLLANFAQIKRHSRVVDLAAGNGAVGLF LARKTDNRVTMVELQPRLADMARRSVALNALANVDVHEGDLADTTKFVAKDSVDVVTCNP PYFKISARSITNPNDHLAIARHELTTDFATVARVSADLLKYQGKAYFVHRPDRLAELLAT LTAVGLAPKQLQFIHPREDREANMVLIAAIKAGRPDGLRIMPPLIVHEADGGYTPFVRRL LHGD >gi|225002509|gb|ACIZ01000070.1| GENE 17 19726 - 20376 534 216 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 191 1 194 249 177 44.0 2e-44 MFYSFLRYVVAGLIWLINGHSQTQEKQELPDGPFVLVAPHRSWLDPVFLALAAWPHHFSF MAKSELFKNPLLRWLLVKVGAFPVDRAHPGPSAIKVPVRALKQEGKALMIFPTGSRYSAD MKGGAILIAKLAKAPIVPAVYQGPGTFWSLFKRKPIIVRFGKPVDPPKGRLTDEALAAFS DELQENFAALDHAINPHYKYVPDKKKYLEEKEHGEV >gi|225002509|gb|ACIZ01000070.1| GENE 18 20434 - 21828 1082 464 aa, chain + ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 9 458 7 460 463 446 54.0 1e-125 MKLWKQMTRKPDLQAALKADDLLTRSLTTRDLIALGIGAVISTGIFILPGTVAATTSGPA ITIAFILAAIVCSLAAMCYAEFASALPVAGSAYAYGNIVFGQVFGWIIGWALILEYMLAV AAVSTSFSAYFASLLSGFHITLPTAIAGPFSPSHGTYINLIAVIVVLLIGMMLSRGMQSS MAINRLMVLVKLLIILIFVVVGFFYVQPANWHPYMPFGAKGVLAGAALVFFAYLGFDAVS ASAPEVKQPQKTLPRGIIGTLIIATILYVLVAIVLTGMVPFTKLDVADPVAFALGVVHLR GLGGFISVGALAGMFTMMVTMIYSSSRLIYAIGRDGLLPRWFGHVSGHLPENALWTVVTV IALMGGLVPLNQLVNLVNIGTLIAFAFVSIGIIPLRRHEAINNQGFQVPGYPVTPIVSFL FCLLLMTQLSAETWLMSLAWFAFGLVIYFSYGIRHGHVSEAKIR >gi|225002509|gb|ACIZ01000070.1| GENE 19 21853 - 22635 637 260 aa, chain + ## HITS:1 COG:L90946 KEGG:ns NR:ns ## COG: L90946 COG4420 # Protein_GI_number: 15672474 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 2 255 6 258 290 214 43.0 9e-56 MVNNQTATCLVDGQVYAISDGLFLSDLETKLVNIIKNDYPRATKNSFICNAHLLNYRLER MRRQQRQDERAHEKINRKMSQALVKDDFQLTDVYDNMESTITFGERIADAVAKYAGSWPF IIIFSSFMIVWMILNTVGIFGKRFDPFPFILLNLFLSMVAALQAPLIMMSQNRAAEYDRL EAKNDYHVNLKSEEEIRLLHSKLDHIIADDNPNLFESQRLTVEVLGEMVNQLSETRQQLA LLKASQDEANRTQLDTKIKK >gi|225002509|gb|ACIZ01000070.1| GENE 20 22699 - 24501 1428 600 aa, chain - ## HITS:1 COG:lin1691 KEGG:ns NR:ns ## COG: lin1691 COG1132 # Protein_GI_number: 16800759 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Listeria innocua # 17 591 16 591 601 574 52.0 1e-163 MASKGYESAWSKSIPVRQQLKIMRRLMGYTRPYKRQFIGAIVAAALLAGMNVLLPKILQV FMDRYLANQSATVQILLLFAVLYAFGTLVKAVFQFFQTFLFNMGAERGLEDARRQLFAKL HTLGMRYFDQTPAGSIVSRVTNDTMTFSDFWNVILAVIVGLFSVISSFAIMFAANPKIAL LVAAFLPILLVVVWYYSTYSSKVYRHMREKLSELNTQLNESIEGIAIIQQFRQENRISRE FEATNQEYLDARKAMIRVNSLLLSSVINLLYSLALIAVLWAFGLISMHSYVEAGLVYAFT TYTANFFNPMVNMMDNLSFLQDGVVAGSRIFRILDSKEYAPAQHPDAHAVIQQGKIEFRH VSFAYDGEHDILHDISFVANPGETVALVGHTGSGKSSIINVMMRFYEFGQGQILIDDVDI RDYPMPELRKKLGLVLQDSFMFYGDISSNIRLFNDQITDHQVKAAAEFVQADRFINKLPD TYHARVIEGGSEFSSGERQLISFARTVVTDPKILVLDEATANIDTETESVIQEGLRRIRQ GRTTIAIAHRLSTIQDANLILVLDAGRIVERGTHESLLAQHGRYYEMYHLQVGEGEEASR >gi|225002509|gb|ACIZ01000070.1| GENE 21 24491 - 26248 172 585 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 353 553 295 502 563 70 27 2e-11 MGIFKKLGWYFKQEWRRYLLGVTFLLLVALVNLIPPKVIGDLVDAMSKSRLTSSHLALML GLLLFSGISQYLFRYGWRNAIWGGAAKLERTLRTRLFWHFMKMDATFYQKHRTGDLMAHA TNDLNAVQNVAGAGILTLFDSFITGGTTIIAMILVVDWRLTLIAILPMPLLAVMARKLGT RLHAAFSESQAAFSRLNDKTQESVSGIKVIKTFGQEAEDTADFNRIVDHTVQINRRVNFI DALFDPTTSLIMGLTYVITIIYGGWQVVHSQISIGQLVSFVTYVSALVWPMFAIGRLFNI LERGNASYDRVDDLLKERSTILEAKDAITTPAHGDIRYQINKFSYPNDQQVALSRVHFTL LEGNTLGIVGKVGAGKSTIFKLLLREFDNYDGFIEFGGHNIKDYSLDALLDSIGYVPQDN FLFSTTVADNIRFSAFEKGQPEVEKAAKESAVHDDIQKFTAGYETLVGEKGVSLSGGQKQ RLAIARAVINAPELLILDDALSAVDAKTEEEILANMKRDRAHKTTIIAAHRLSSVMHADE IIVLENGQVIERGTHAQLLAKHGWYAEMWAKQEMEAAEEGEMRGK >gi|225002509|gb|ACIZ01000070.1| GENE 22 26439 - 26660 295 73 aa, chain - ## HITS:1 COG:lin1344 KEGG:ns NR:ns ## COG: lin1344 COG3763 # Protein_GI_number: 16800412 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 65 1 65 79 65 67.0 3e-11 MLVTILVGIIALLVGLAGGFFGARAYMKKYFQDNPPVNEEMLRTMMMQMGQKPSAKKLNQ MMAQMKQAQRNAK >gi|225002509|gb|ACIZ01000070.1| GENE 23 26721 - 26966 350 81 aa, chain - ## HITS:1 COG:no KEGG:LGG_01637 NR:ns ## KEGG: LGG_01637 # Name: ynzC # Def: cytosolic protein # Organism: L.rhamnosus # Pathway: not_defined # 1 81 1 81 81 107 100.0 1e-22 MAEQPKERLDRINELAKKDRSVGLTPEEKIERQKLREAYLKDFRAGLRDQIEHTQVFDKK GHEITSKKVQKIQREHGWRED >gi|225002509|gb|ACIZ01000070.1| GENE 24 27109 - 27285 232 58 aa, chain - ## HITS:1 COG:no KEGG:LGG_01638 NR:ns ## KEGG: LGG_01638 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 58 1 58 58 89 100.0 3e-17 MDDQWIYVVYYADQSAPIELLKAFSSQRRAAEYVAMLQNAPYPNHEAAHYHYTAVQLN >gi|225002509|gb|ACIZ01000070.1| GENE 25 27613 - 27993 639 126 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229552441|ref|ZP_04441166.1| 50S ribosomal protein L19 [Lactobacillus rhamnosus LMS2-1] # 1 126 1 126 126 250 100 1e-65 MIMNVGKGERPMNPLIQEITKKQLRDDIPDFRAGDNVRVHAKIVEGERERIQLFEGVVIK RHGVGISATYTVRKISNGVGVERTFPLHSPRVEKIEVTRHGQVRRAKLYYLRALRGKAAR IREKRR >gi|225002509|gb|ACIZ01000070.1| GENE 26 28165 - 28950 809 261 aa, chain - ## HITS:1 COG:L6128 KEGG:ns NR:ns ## COG: L6128 COG0336 # Protein_GI_number: 15673546 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Lactococcus lactis # 1 239 5 243 251 299 60.0 4e-81 MQIDVLSLFPNMFEPLRESMIGKALERHLLDFDVVDYRSYSHDKHHHVDDTPYGGGAGML LKPEPLFEAMDGVNQRHPGPKRVILMDPAGKKFDQQAARELSQAEHLVFICGHYEGYDER IRTLVTDEYSLGDYVLTGGELPAMVMIDAIVRLLPGVLGNDESAHTDSFENGLLEYPQYT RPPEYRGMKVPEVLQNGNHQLIARWRLKESLRRTYLRRPDLLQAAHLDQDAMRLLREVKT EEATKAAEERLKGTISNQDVD >gi|225002509|gb|ACIZ01000070.1| GENE 27 28940 - 29458 185 172 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199] # 1 170 1 168 179 75 28 6e-13 MPDYYDIGTIVNTHGIRGEVRVLVTTDFPEQRFKVGNKVYVATTPKTALTINSVRQHKGL TMLTFKDYTDINQVLPFKGKKLQVTEAALKPLEEGSYYYKDIIGLTVIDEHGQTLGKVSE ILSPGPNDVWVIPRPGKSELLLPFLKSVVQTIDLEQKEAHVIVPEGLIDDAD >gi|225002509|gb|ACIZ01000070.1| GENE 28 29526 - 29780 271 84 aa, chain - ## HITS:1 COG:lin1910 KEGG:ns NR:ns ## COG: lin1910 COG1837 # Protein_GI_number: 16800976 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Listeria innocua # 7 79 4 76 76 76 54.0 1e-14 MVDIGSLIKAIVTPLVTKPEAVAVTAHETDEYMAFDLAVAPEDVGRVIGKQGRVAQAIRT IVYSVKSPYSKRVRLNILDAPHAK >gi|225002509|gb|ACIZ01000070.1| GENE 29 29793 - 30107 531 104 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227534904|ref|ZP_03964953.1| ribosomal protein S16 [Lactobacillus paracasei subsp. paracasei ATCC 25302] # 1 104 1 104 104 209 100 4e-53 MLSRLINEQEVDLVAVKIRLKRMGSKRKPFYRIVVADSRSPRDGRFIEAVGYYNPLTNPV DLKLNEEDILNWLQKGAQPSDTVRNLLGSKGIMQKYHEARFAKK >gi|225002509|gb|ACIZ01000070.1| GENE 30 30164 - 31600 1253 478 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 443 1 443 523 550 65.0 1e-156 MAFEGLSERLQKAFSGLRRKGKVSESDVRDAMREIRLALLEADVNFDVVKTFIKNVRTKA VGSEVLESLTPAQQIIKIVNDELVKTMGEAAVPLNKAPHIPTVIMMAGLQGAGKTTTVGK LSKYLMENEKARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDTDPVEIVRQGLATA KENKNDYVLIDTAGRLQIDEKLMTELKNIKELAHPNDILLVVDAMTGQAAVDVAKGFNEQ LDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALDVFYPDRMANRILGMGD MLTLIDKAQKTYDEKQAQEMAEKIRENSFDFNDFLDQMDQISKMGPLEDIMKMIPGMANN KALANVKMDPKDIAHMKAIVYSMTPKEREDPDLLNPSRRRRIAAGSGRPVVEVNRMIKQF NQSKQMMNQMSKGNMKGLDGLMGGGVSGKLGKMAMNSMVRKQKRNKKKRLKKAKRFHS >gi|225002509|gb|ACIZ01000070.1| GENE 31 31613 - 31954 487 113 aa, chain - ## HITS:1 COG:SPy1201 KEGG:ns NR:ns ## COG: SPy1201 COG2739 # Protein_GI_number: 15675166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 100 4 99 113 105 61.0 2e-23 MEIEKNYRMNSLFEFYGPLLTDKQHAYLALYYGDDYSLGEIATEFNVSRQAVYDNIRRTE ASLEEYEQKLHLFANYQAQNEAVDALVGYVRTHYPSDKNLSTLLERVADQTAK >gi|225002509|gb|ACIZ01000070.1| GENE 32 32360 - 32551 231 63 aa, chain + ## HITS:1 COG:no KEGG:LC705_01628 NR:ns ## KEGG: LC705_01628 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 63 1 63 63 98 100.0 6e-20 MPKTTLTLTSSDSQNIDDLIAAVTQKLDQTGYGFLAIAFAQELAYHQSDADKLALIKEYV TIQ >gi|225002509|gb|ACIZ01000070.1| GENE 33 32618 - 32932 381 104 aa, chain + ## HITS:1 COG:no KEGG:LSEI_1604 NR:ns ## KEGG: LSEI_1604 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 104 1 104 104 141 94.0 9e-33 MVATFIYWAVFAVLAAWGLWSLVFSCVYLSNHENGNLWFFAIINAIFGLLGWLFAWIMSN TAWQQYWFASKVQPSAWFTYLLIGYLVLIVLQVVLGREKQVQTA >gi|225002509|gb|ACIZ01000070.1| GENE 34 33004 - 33999 898 331 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 1 328 1 325 336 350 55 1e-95 MGLFDAIKKAFTGTEPETPEENKYDEGLEKSRSSFGEKLNALFANFRTVDEDFFDDLEEM LIESDVGFETAVRLSDELREEVKLKNAKDPKAVSRVIVEKLVDMYGEAGKGEDNQLHFAE EGPTVFLFVGVNGAGKTTTVGKLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVEVP VVATNPGGDPAAVVFDGVKRAKDEGYDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPD APQEVLLVLDATTGQNALNQAKEFNQTTQITGIVLTKLDGSGKGGIVLAIRNELHVPVKL VGLGEKMDDLQAFDPTKFVAGLFKGLIQIDA >gi|225002509|gb|ACIZ01000070.1| GENE 35 33999 - 37553 3298 1184 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1178 1 1181 1186 697 38.0 0 MELKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER MGDVIFAGTDSRPALNRAAVTMTFDNSDGYLKNQPAEVSVTRRLYRDGTSEFLLNNQDVR LKDIVDLFMDSGLGRESFSFISQGRVEAIFNSKPEERRGIIEEAAGVYKYKQQKTKAERE LANNDDNLARINDIIVELKHQVEPLREQASLAKDYQQQSADYHRIHQTLLALEIEQLAAE QEKTQGEAKVTKATIAALTAKVKDLEHQSEQLSAVDHQYEEQLNHLNDQVLSRSMKLENL SGEANLSSERSANAATTLADLKERLAHTQQSLTEANQRLADLAKQAKTAQAKQLELKTQL AQQKQASQDPAAINRQLETVQNHYIDLLKAQADNKNAQAALQKDQQLAASQNAAHDRRIY ELSKQAQDQEAKVNILLNQQQQLQTKVDQQQAAAEEAKDKLTQIQKVRTDQQQTYQDEMA TYQRARARYETLSELNEDYAGFYNGVRVVLKHKASLPGVIGAVAELLEVPSAYQQAFDLA LGSNLQAIVTRDEAAAQRAISLLKQQRAGRATFLPAAVMRPRELPSAVLQLVEGADGFLG TGLQLAQYPADLKAVMANLLGSVLIVDTLPHAIVIANTTHHRYRIVTTAGDILNPGGSLT GGQVKQGRQASPLARNQEARHLKTQLQDLVADLKQKQADLTTLTKQENAAQEAWQTATAQ AQALAADLTAITSQHNAQAETLRQAQRQLAAAQQANTAQADLSTKLADLHQAGQKIAKEI ADAQAKIEQLKEAAVAAADSSSKQAAAVNGLKTKLAVIANDLQTLHDQQQQWQAQATDAQ TQSTELQQRIAHITATAKETAAEKESRTATIASLKKELTQLKADQTKLTQEKAANRGKLS DISARITTTYDQQHQAMATSEQQAVALNRVKLGLDARLNTLAEDYQLTYEAAKAAVAADH APIPELKSKLKLLKRGIDELGPVNLNAIDQFKEVNERYEFLTKQQDDLLAAKQQLVATMH ELDETVKTRFKAMFDQTNSAFEAIFPQMFGGGHAHLSLTNPDDLLTTGIEISAQPPGKKL TRLSLLSGGERALTAIVLLFAILKVRPVPFSILDEVEASLDDVNVNRFGEFLRHYASATQ FIVITHRHGTMVAANVLYGVTMQESGVSRIMAVSLDQSQKEATS >gi|225002509|gb|ACIZ01000070.1| GENE 36 37573 - 38268 744 231 aa, chain - ## HITS:1 COG:lin1919 KEGG:ns NR:ns ## COG: lin1919 COG0571 # Protein_GI_number: 16800985 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Listeria innocua # 9 229 6 226 229 234 55.0 8e-62 MVASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTV SDYLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLL EDLFEAFNGALYLDQGREANIKFTKQIIFPKIDAGEFSADQDHKTALQETLQQNGDVAIV YHLLDEKGPAHERQFHVDVEVEGRVLGTGFGKNKKAAEQAAAKAALARLKK >gi|225002509|gb|ACIZ01000070.1| GENE 37 38370 - 40163 1526 597 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 597 1 600 600 438 43.0 1e-122 MKKRSVLGMITLATALSITLVACGNKSSNSSSSTANKSVKFPVSYNNTAKAIKGGNVNVA VVNDSPFKGVFNEELYTDQYDYDYMTPAAESLFGTNSTFKFNNQGAATLKQDNSAKTITV TIKPNVKWSDGQPVVARDLVYAYEIMANKATKSQRYTESLQNIEGLTEYHDGKADTISGL TMPKGDNGNTMVIHFKQMKPSFNTSGNGYFLKSAAPYHYLHDVAFDKLESSDKVRKQPLF FGPYKISKVVAGQSVEYTPNQYYWKGKPSLSKITFENVSSASITSALKNHKYDIVYGMPS DSYSDWKNISGYTNLGHQSLTYNYLGFKLGKWDDKKSENVYDPNSKMANKSLRQAMGYAL NNDQVAAKFYNGTRSRATTLIPPVFGKDVHADIDGYDLNIDKANSLLDKAGYKKGKDGYR TDPKGKKLTIYFATMAGGSTAQPLAQDYIQQWKKIGLRVKLTTGRPIEFNSFYDKVQNDS KGIDVYAAAWSLSSDPSPMDLFSQKAPFNYTRFVSAKNTKLLNDIDSQKAMDPAYRAKAL KAWQKYANDEAFVIPTLYRQEIFPVNKRVKNASVDYASAKYLNWSKMTVTSNSRATK >gi|225002509|gb|ACIZ01000070.1| GENE 38 40353 - 41264 692 303 aa, chain - ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 303 1 302 302 269 47.0 6e-72 MQNNANEVATDTTKIEQSPSNFKVILNEFRKDKVAVVSLFLAVTIILAAFIGSMLFNVGG ATEVNILDRYMAPGTGGYILGTDEGGRDMFKYLFFAARNSITIGISVALIIEFVGVVLGT ISGYFGGLVDAVIMRFVDFMMIIPSLLVIIVLVTIIPQYNVITIILIMAAFYWMTTTRLM RSLVLSEARSEYVMASKTSGTSNLKIMFTGVLPNISSLIITDLTLTIASSIGIETALSFL GFGLPMETPSLGTLIGYASNPDLIFNRWWVWFPAVLVLLTLSLSINFVGQAMRRAADSRQ RRG >gi|225002509|gb|ACIZ01000070.1| GENE 39 41281 - 42243 710 320 aa, chain - ## HITS:1 COG:BH3638 KEGG:ns NR:ns ## COG: BH3638 COG0601 # Protein_GI_number: 15616200 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 320 1 322 322 341 54.0 1e-93 MWKTILRRILIMIPQLILLSVLVFVLSKMMPGDPLAGNFSQGQSAAQMAALRQQYGLNDP WYIQYVKWIGNMFHGDLGQSFVYKRSVTGLIGERAANTFWLALLSTVILYVIAIPAGVIA GRYEGSKRDSAISIASFILMAVPPFVFYLLGLIFFGFFLQWFPTGGSVSSTYNPGTLGYV WDRIYHMILPALVSGIITTSSTIQYLRTGVIDNTHQDFVRTARSKGVPDRVIFNKHILRN SLLPIAAFMGNQITMLLGGSVILETVFSYPGMGQLFVSSMTSRDYPVVISLVLLFGFLTL LGNLLSDIIMSIVDPRIRIE >gi|225002509|gb|ACIZ01000070.1| GENE 40 42243 - 43196 728 317 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 3 267 11 275 329 285 51 6e-76 MAMIEVKNLKIHYPIRSGFFNRVTDHVLAVDGINFDIEQGETYGLIGESGSGKSTTGKAI VGLEPVTSGSIIYKGEDITKRSVRKRLQYNKDVQMIFQDSLSSLNPRKRIEDIIAEPIRN FQNLTKDEERHRVQELLDIVGMPSDALYKYPHEFSGGQRQRIGVARAMATNPKLIIADEP VSALDLSVQAQVLNFMKRIQEEYNISYLFISHDLGVVKHMCKKMAIMHRGRFVEIGTRED IYQHPQHIYTKRLLSAIPDVNPDDRAQNKEHRREVERIFKEEESKYYSKEGRVLDLQKIS DTHYVALPDSSMKGVHD >gi|225002509|gb|ACIZ01000070.1| GENE 41 43199 - 44221 893 340 aa, chain - ## HITS:1 COG:BH3640 KEGG:ns NR:ns ## COG: BH3640 COG0444 # Protein_GI_number: 15616202 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Bacillus halodurans # 8 335 6 333 340 427 61.0 1e-119 MDKPEDLLLDVQHLHTGFRLGDAFYDAVDDVSITLRKDEILAIVGESGSGKSTLATSIIG LHDPRNTKVTGDILYNNLNLVGLNETLFDRIRGKDIGMIFQDPLAALNPLMRIGEQIEET LVYHTKMNKEQREQRVLELLSQVGIPNPERTARSYPHELSGGMRQRIVIAIAIACKPPII IADEPTTALDVTIQAQILDLLEDIQREMHSGIILITHDLGVVAETADRVAVMYAGQIVES GSVMDVFKHPTHPYTRSLLRSMPQADSDDDELHVIQGVVPSLKNMQMEGCRFAPRIPWIP ESAHEEHPTMHEVAPDHFVQCTCYKDFYFPDDKQAAGKGE >gi|225002509|gb|ACIZ01000070.1| GENE 42 44314 - 44478 75 54 aa, chain + ## HITS:1 COG:no KEGG:LC705_01638 NR:ns ## KEGG: LC705_01638 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 54 1 54 54 88 100.0 9e-17 MQAKIAFLRDLSVNSPEKPLHVLLTRTCLLDEKKKGLEVILKAHFAVLERLQAK >gi|225002509|gb|ACIZ01000070.1| GENE 43 44511 - 44753 296 80 aa, chain - ## HITS:1 COG:lin1920 KEGG:ns NR:ns ## COG: lin1920 COG0236 # Protein_GI_number: 16800986 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 78 3 76 77 65 52.0 3e-11 MSEDEIYQKIAGLIQDHFQLSPDKISPSLNFKEDLDADSIDIVEFVLELEDAFGSEIPDD DAENIKTVQDAVDYIKAHQK >gi|225002509|gb|ACIZ01000070.1| GENE 44 44807 - 45832 1122 341 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 2 326 3 327 330 370 60.0 1e-102 MKIAVDAMGGDHAPEVVIAGVEKARDHDANLEFLLYGDEAKIKPLIHNQDRLTIIHTAEK INSDDEPVRAIRRKKQASMVLAAQAVKQGEAAAMVSLGSTGALLAAGLFIIGRIRAIERP GLLPTLPTVDGKGFVMLDVGANAENRPYHLLQYAIMGSYYAKDVRGVANPRVGLLNNGTE ANKGDKLHQEAHDLLAAAPGINFVGNVESSNILNGPADVVVTDGFTGNATLKAIEGTVRT VMHMLKGAIYDGGVSGKLGGLFLKNNLKSMAKTFDISSYGGAVLLGLKAPLIKAHGAADA DTVYYTLLQTATMVKNGTVAKLADYFDAHPEIVEAKTTEKA >gi|225002509|gb|ACIZ01000070.1| GENE 45 45856 - 47895 1710 679 aa, chain - ## HITS:1 COG:SPy1785 KEGG:ns NR:ns ## COG: SPy1785 COG1200 # Protein_GI_number: 15675625 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Streptococcus pyogenes M1 GAS # 1 666 1 661 671 672 51.0 0 MALTDPVRVLPGVGPKREEGLASLGIHTVGDVLFYFPFRYDDLKVKDLAEAADQEKLTIK GVVVADPVISRFGPHRSRVNVKLQVERSVILVTFYNQPWLKDRFQMGDEAAVFGKWDAQR RSLTGMKILATQSQDQPSMAAIYTVNKNVRMGTLLELIKAAWARDHQNIHDLIPASIRAH YRLMSDEQLVHGMHFPDTQQEAKAARRSGVFREFFLFQLQIQALKQLNDNANNGLAIPYD NQALRALIATLPFSLTNAQKRVVNEICADMRRPNHMNRLLQGDVGSGKTIVAAIVLYAAV TAGYQAALMVPTEVLAEQHFAKLEALFADFPVKLGLLTGSTTAKKRREMLAELRDGTLNL IIGTHALIQKGVDFKALGLVVIDEQHRFGVNQRKILQEKGQKPDLLSMTATPIPRTLAIT AYGEMDVSTIDELPAGRKPITTTWLRKNQVGQVYRLIRSQVQAGSQVFAITPLIAESEKV DLQNAEQLFADMQKAVGDVGQVALLHGKMKPDEKDQIMRAFSHGDIAVLVSTTVVEVGVD VPNATVMAIFDADRFGLSQLHQLRGRVGRGNKAAQCLLIADPKNEQGIARMQIMTKTNDG FLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEVAQQIVAKIFKTDPHLLAPE HQPLAAYLAASRMMQGSLD >gi|225002509|gb|ACIZ01000070.1| GENE 46 48008 - 49684 1511 558 aa, chain - ## HITS:1 COG:SPy1885 KEGG:ns NR:ns ## COG: SPy1885 COG1461 # Protein_GI_number: 15675702 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pyogenes M1 GAS # 3 558 1 554 554 566 55.0 1e-161 MAVTEITATKFQDMIRVAAHRINKNAEFVNSLNVFPVPDGDTGTNMNLTFQTGAKAVLES NEDAVGALAKRLGKGLLMGARGNSGVISSQLFRGFAKSVEGKKNLSAQDLADAFAHGVET AYKAVMKPVEGTILTVAREAAKAGLKAANGSDDALVVMTAVVKGAKRALAKTPDLLAVLK EVGVVDSGGQGLVFIYEGFREGLSGEISSDVHDVTDEEMTEMINAVHHQSAQTQLDPADI VYGYCTEMMVELGHGDQFKHFDYEPFRNYLNTLGDSTLVVADEEVVKVHVHTEHPGTVFR YGQQFGDLLKIKVDNMRLQQESIIEREGALDAKADTQPLAEMGVVAIAAGQGLGELFKSL GVTYVLNGGQTMNPSTNDILDAVKSAHAKHVIVLPNNGNIFMAAEAAAKAATDVEVAVVK SKTINQGMTAMLGYNPDADLATNQSEMTAQLPNVVSGSITQAIRDTTINGLAIKNHDWMG IIDGTISVTDQNREVAAIAMVNKMINADSEIVTIIVGADASQSEAKAIAAAVGDQHPDLE FEIHQGDQPVYPYFVSVE >gi|225002509|gb|ACIZ01000070.1| GENE 47 49745 - 50107 445 120 aa, chain - ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 118 1 118 121 126 61.0 1e-29 MAVKIKTKYGIIDISNSVIATVVGGAATSIYGIVGMASRNQIRDNLNDILKRENYARGVV VRQTDNGVKIEVNIIVSYGTKISEVCRNVQDKVKYNLETMLGVTTDEVTVIVQGVKVLGD >gi|225002509|gb|ACIZ01000070.1| GENE 48 50333 - 50518 311 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|199597144|ref|ZP_03210576.1| Ribosomal protein L28 [Lactobacillus rhamnosus HN001] # 1 61 1 61 61 124 98 1e-27 MAKDVITGRHTTFGNKRSHALNSSRRQWKANLHKVRILVDGKPKRVWVSARALKSGKVTR V >gi|225002509|gb|ACIZ01000070.1| GENE 49 50673 - 51341 493 222 aa, chain - ## HITS:1 COG:lin1931 KEGG:ns NR:ns ## COG: lin1931 COG1564 # Protein_GI_number: 16800997 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Listeria innocua # 1 214 1 214 214 151 40.0 9e-37 MTTINIMAGGPHDDLPTDWQQLLGVWIGVDRGTLHLVEAGIQPDLAVGDFDSLTLSELRD VREHVKKIQQVPSEKDDTDTELAVKAALQCFSTGDVIILGATGGRLDHFLSNLFLPLQSR FLPAIERIHLLDVQNRVDYYAPGVHEIQPLPGYRYVAVVNLTPITDLTITGAKYPLKAWD NASPFSWASNEFVGTKPFTVSWTKGVVAIVYSRDRRGQKVDN >gi|225002509|gb|ACIZ01000070.1| GENE 50 51338 - 51988 740 216 aa, chain - ## HITS:1 COG:L0047 KEGG:ns NR:ns ## COG: L0047 COG0036 # Protein_GI_number: 15673906 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Lactococcus lactis # 2 212 4 213 216 241 58.0 7e-64 MKIAPSILSADFAHLARDVEKVEQAGADLLHVDVMDGHFVANLTFGPLVVQALRPVTNLP LEVHLMVSDPAAWAPAFAEAGADTILVHEEATDHLYGVLQHIAATGVRAGVVVNPGTPLS SLEEVLPLVDQVLVMTVNPGFGGQKFLTAMVDKVARLHQLRQDRGLHFDIEVDGGINAKT VKAAADAGTDIFVAGSYVFSASDVGAAISSLREAVQ >gi|225002509|gb|ACIZ01000070.1| GENE 51 52016 - 52921 530 301 aa, chain - ## HITS:1 COG:SPy0263 KEGG:ns NR:ns ## COG: SPy0263 COG1162 # Protein_GI_number: 15674443 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 5 300 1 285 290 278 47.0 7e-75 MSEELTGRIIKQISGYYDLAVDGAIYRTRGRGSLRNDKITPLVGDFAVFQPGQGDDEGYL LRLLPRHNALVRPPVANVDQALLIVSAVEPDFSLNLLDRFLVYLEGHAIHAEIYLTKTDL APDRLLKQIEEALAGYQAIGYAVFMPEAAFDPATLNQVQASFADKLTIFTGQTGAGKSTL INHLVPGLDLATGTISRALNRGKHTTRTTDLYPIHGGLVADTPGFSSLGLLDVTLDDLRD RFPEFVALAPHCKFRGCQHVSEPQCAVKAALDAGKIMASRYENYLQFREELSGKRPVYKK K >gi|225002509|gb|ACIZ01000070.1| GENE 52 52918 - 54918 2014 666 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 5 298 4 298 342 372 63.0 1e-102 MIEPGTILNERYKLIKTLGEGGMANVYLARDLILDRDVAVKVLRLDLQNDPDTVRRFQRE AIATSELVHPNIVSIYDVGESHGQQFLVMEYVKGSDLKHYIVEHFPIPYQRVVDMMEQIL SAVQTAHDHNIIHRDLKPQNILIDPDGNAKITDFGIAVALSENSMTMTNSLLGSVHYLSP EQARGSMPTRQSDIYALGIILFEMLTGSVPFEGDSAVSIALKHFQEEIPSVRAFDPHIPQ ALENVVFKATAKNPANRYTSADAMASDLSTALSPARAHEAKYVIPKDDLDETRIVPVIPN GPKPPHDDDDHANQPAEHHSPDGQAKKKRRRWLMIGLSALIVMLILVGIGLVTANQKADV TVPDLRGMTKTQAKTALTSSRLKVGKYRYTYSTKVDRDLVIDSSPKRQVSVKEGSAVDLI LSRGQPRITLDNYVGQDYTDAKSDLQKRGVTVKEKVVRTNSVAAGKITAQSIKPGKKVIA SKTTITFDVAEPIKKVNTAFALRDLTGYTEKSLRDYANEVGLKIVIAQSHSDTVDTGMVI SQNPAAGTQVHAGDTVNVTISQGPDPDELKTVTKTISIPYQAPASSSTTSGSGSSSGSAS SSGPTPNGVQVFIGDKTHNIDSVDKTFNITADNQVTITLQVNKTYPGSYRVVRDGTVVAQ EYNITQ >gi|225002509|gb|ACIZ01000070.1| GENE 53 54915 - 55658 627 247 aa, chain - ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 1 245 1 244 246 210 46.0 3e-54 MEFAYRTDIGRRRPNNQDYVGIFKNQSEATLALVADGMGGHRGGDVASEMAVSHLGYAFE KTDTAEIESIVRWLIFELQQENDMILQKAKQYTDLSGMGTTVVAVIISGTRFVVANIGDS RGYLYRNGHLVQITEDHSLVNELVKHGELTPEEAKRFPQRNVITRSLGVSSDVDADVTIY DMEFDDYLLLCSDGLTNMVDNEAIAAVLRQDMPIGSKAQELILRANAAGGPDNITALIIH QDRREPS >gi|225002509|gb|ACIZ01000070.1| GENE 54 55668 - 57008 1128 446 aa, chain - ## HITS:1 COG:BH2507 KEGG:ns NR:ns ## COG: BH2507 COG0144 # Protein_GI_number: 15615070 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Bacillus halodurans # 1 442 1 446 450 367 44.0 1e-101 MTPNNPRLLAVQTLTRVMGKGGYSNLTLDHVITKYQLDSRDAGLLTNIVYGVIQHQLTLD YLLAPFVKTRQLDTWVRCLLQTSVYQLQYLDKVPARAVFFDSTEIAKKLGHQGVAKFVTG VLRQAQRSGYPDPMTIADPIQRLAITSSTPVWLVKKLQAQLGETKTAKILAAINQPAHAS IRVNTTKTTAAALLKALQPQFPALKESPLTPVGLVAPGGHLAGTREFADGLYTMQDESSM LVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLIQQNAKRL DLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLIRRKPEIKYTKQPEDLQHLQK IQLAILDSVAPTLKIGGRLTYSTCTMVKEENQDVVAHFLATHPEFEQVPVLTLKPLAKTH GAPALQLFPDDYDTDGFFIASLIRRK >gi|225002509|gb|ACIZ01000070.1| GENE 55 56995 - 57951 795 318 aa, chain - ## HITS:1 COG:SP1735 KEGG:ns NR:ns ## COG: SP1735 COG0223 # Protein_GI_number: 15901567 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 311 1 308 311 283 48.0 4e-76 MTSVIFLGTPDFAVPILEGLIAQHYDVVAVMTQPDRKVGRKQKLAASPVKQAAVAHNIPV LQPEKLSGSPELAQAIALAPDLIVTAAYGQFLPTKFLQAAKIAAVNVHGSLLPKYRGGAP IQYSIINGDAETGVTIIEMVKKMDAGDMFAQAKLPLTRQDDTGTVFAKLSLLGRDLLLAT LPKIIDQTAIRTPQDPEKVTFAPTITKEQEHLDIHLSARALDQWVRGLRPEVGGYVYMNG QRTKLWAITPLTATTNLPAGSVVARSKHQLVIAAGKQSTFQIDELQPAGKSKQHIADYLN GPGRDLTVGQQVITDDPE >gi|225002509|gb|ACIZ01000070.1| GENE 56 58010 - 60427 1516 805 aa, chain - ## HITS:1 COG:BH2509 KEGG:ns NR:ns ## COG: BH2509 COG1198 # Protein_GI_number: 15615072 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Bacillus halodurans # 4 805 2 804 804 790 51.0 0 MATIAKVIVDVPTMQTDRPFDYLVPPRLDGALQPGMRVWVQFGKGARKVSGMVVALSDQS EYAGELKPLLDVLDPAPVLNQEMLALSKWLAETTYSFWIACMQTMLPTMLKIDAVKIAEP IALSAEEQARYFGQADSVAFNTLSDEDQVALMKLAQAEKVAISYVKKDRARVKQVFYLIP QLSAEQVAAEKQQTRKNAVKQLQLLDLIGTWAAKHERPLLTDVEHHTKLTKATINQAAAK GWLKLEAHETYRDPYPQLRHQPLTQPLPLTADQKKIVDTINQAVKAKEPKTFLLEGVTGS GKTEVYLQVIAQVLAAGQTALMLVPEIALTPQMVDRVKGRFGMHVAVMHSGLSDGEKYDE WRRIARGEAQVVVGARSAAFAPLRHIGVFIMDEEHETSYKQDSVPRYHARDVLLKRAQIH HAPVVLGSATPSLESRARAEKGVYTLLRLPQRINDQPLPPVHIVDMREAFAQGAQEDFSA PLLDALKVRLERHEQSVLLLNRRGYSSFVMCRDCGYVAKCPNCDISLTLHMDTHTLKCHY CGHEEAIPHRCPQCGSDKIRYYGTGTQKVEAQLQTLLPNARILRMDVDTTRRKGGHARIL NAFGAHQADILLGTQMIAKGLDFPDVTLVGVINADTSLGLPDFRASEKTFQLLTQVSGRA GRADKPGEVFVQTFNPDHYAIQYAKRQDYEGFFRQEMAVRHQGNYPPYFFSTKIGVSHPD ETQAAKAIFSLAKELRAQLSDQVIMLGPTPGPIARLKNRYIYQIVLKYKHEPALAKTLQH ILEETQQSSRQGFQVTIDPEPLSFV >gi|225002509|gb|ACIZ01000070.1| GENE 57 60432 - 60605 128 57 aa, chain - ## HITS:1 COG:no KEGG:LC705_01653 NR:ns ## KEGG: LC705_01653 # Name: coaBC # Def: phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase # Organism: L.rhamnosus_Lc705 # Pathway: Pantothenate and CoA biosynthesis [PATH:lrl00770]; Metabolic pathways [PATH:lrl01100] # 1 57 343 399 399 105 100.0 6e-22 MIVANPVDATHGFNADTDTVTFLRPDQPPVTLPEMTKQKVAVALIEQLTRMLPKQKG >gi|225002509|gb|ACIZ01000070.1| GENE 58 60602 - 61630 774 342 aa, chain - ## HITS:1 COG:SA1054 KEGG:ns NR:ns ## COG: SA1054 COG0452 # Protein_GI_number: 15926794 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Staphylococcus aureus N315 # 1 339 1 342 399 266 46.0 3e-71 MKKQHIALFVTGGIAAYKIPLLVRALVKAGYDVRVAMTASAQKFVTPETLAIVSKHAVLT DGHEFDHPEHVAHVALAHWADLGVVVPATANTLAKLAAGLADNVVTTTLLAMTAPKLMVP AMNDQMWQNPQTQRNIARLISRQGYRLLPPATGQLAEGYTGVGRMPEPDQIALFLENLAE PRLKGRRIIVSAGGTKERLDPVRYLTNDSSGKMGTAIANAAAGAGAAVTLVTTRELPVVP GVTVKPVTSAQSMADAILADFPDADAVIMAAAVADYRAPTISDHKIKKVDANSGLTLTLV QNPDILATLGQKKTHQVVIGFAAETNDLLANAQTKLTKKRPT >gi|225002509|gb|ACIZ01000070.1| GENE 59 61820 - 62062 386 80 aa, chain - ## HITS:1 COG:SPy1630 KEGG:ns NR:ns ## COG: SPy1630 COG1758 # Protein_GI_number: 15675506 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pyogenes M1 GAS # 2 64 1 62 104 60 58.0 7e-10 MIIYPSIDKLLEKVPSRYSLAVLAAKRAHELEAGDLKMLSDYKSDKSVGKALEEIAAGDV IIDPKSKMLERDAEKLDHKD >gi|225002509|gb|ACIZ01000070.1| GENE 60 62121 - 62747 647 208 aa, chain - ## HITS:1 COG:SPy1632 KEGG:ns NR:ns ## COG: SPy1632 COG0194 # Protein_GI_number: 15675507 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pyogenes M1 GAS # 1 201 1 201 211 263 66.0 2e-70 MHERGMLIVLSGPSGVGKGTVRQAMLEGNYRDFQYSISMTTRQMRPGEVDGVDYYFRTKA QFEHEIATGGMLEYAKYVDNYYGTPLKYVNETLESGRDVLLEIEVNGAMQVRKKCPNGVF IFLTPPDLSELRHRLKGRGTDDDETIDKRIRKAASEITMMENYDYAVVNDKVDLAVKRIE RIIESEHLRVPRVIDRYKGMLASADLAR >gi|225002509|gb|ACIZ01000070.1| GENE 61 62814 - 63497 383 227 aa, chain - ## HITS:1 COG:no KEGG:LC705_01656 NR:ns ## KEGG: LC705_01656 # Name: not_defined # Def: esterase of the alpha-beta hydrolase superfamily # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 227 1 227 227 432 100.0 1e-120 MVLAVVFGGGAAHGAYQAGVWSVLGPRLVPAFVIGSSIGAINAAATVHMAPQQLAHWWQS LTSLKTRGPIFARRNFVPLLEQMLRSPKRDQRAVLAVTTRLPDLRAHVTRIDGLSVADAR EWLLASSAMPGIFTPIDRHGTSFVDGGVVNDLPVDIARDIGADFVVAISGTGIGRIGSDH GDVYLKPSQPLPRLFNFRPAAIAEMMALGKKDAEMTLRHMTFSLPRS >gi|225002509|gb|ACIZ01000070.1| GENE 62 63625 - 63927 197 100 aa, chain + ## HITS:1 COG:no KEGG:LGG_01676 NR:ns ## KEGG: LGG_01676 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 100 1 100 100 185 100.0 4e-46 MENKSSALQNVTHHLVASYRELFDLAAPTMQMPAHQVDLFIDQAMQRHYQIALYFNHETA PFVGHIVRPLGEKRFLVKGYHSNIFRIMTSTSVNYIKRFK >gi|225002509|gb|ACIZ01000070.1| GENE 63 64072 - 65775 1489 567 aa, chain - ## HITS:1 COG:lin1405 KEGG:ns NR:ns ## COG: lin1405 COG0497 # Protein_GI_number: 16800473 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Listeria innocua # 1 562 1 561 563 490 49.0 1e-138 MLQELAIHDFAIIDNLALSFQSGMTALTGETGAGKSIIIDAVGLLAGGRGSVDFIRTGAS KASLEGLFDAQANPLTEAKLQAFGVMDPDQNDTVLLQRELFRSGRNVCRVNGHLVNTATL KAIGETLVDIHGQNEHQQLMHSETHLGLLDAFAGDDLLKIRHQYAEVYQNYQRTLQAVKQ KQANEQEWAQRLDMLKFQVSEIQSADLQPHEDTDLSTERDRLANFQRINAALQESYALLS DEEVNALDQIGQAMSSMQSIADLDPDFAAIADNLQSAYYSLQDVQNDLSKELDDQEFDEG RLDEVEKRLDLFNQLKRKYGETLDEVIAYGKRAAAELNQMEQAETSVEDLDSNLKESQAQ LQKLGAALSKRRHAAAKQLTKAIHEQLASLYMDKTVFSVHFTKAKDFRADGLDEAVFYIQ TNPGEEAKPLAKIASGGELSRLMLAMKTIFARSEGVTAIIFDEVDTGVSGRVAQAIANKI SLIAKRSQVLCITHLPQVAAMADHEYVISKAVHDGRTTTQVNKLTHKARVEEIARMLAGE KITKLTIEHAEELLRMADEFKHGKVSS >gi|225002509|gb|ACIZ01000070.1| GENE 64 65780 - 66232 429 150 aa, chain - ## HITS:1 COG:BH2777 KEGG:ns NR:ns ## COG: BH2777 COG1438 # Protein_GI_number: 15615340 # Func_class: K Transcription # Function: Arginine repressor # Organism: Bacillus halodurans # 1 136 1 136 149 112 42.0 4e-25 MRKRERQATIQRLIQSEPIERQEDLVARLTEMKIPVTQATISRDIKEMQLVKIPAGEGHY RYSMPAEKQLPATDKLRRTLVTAMKWGEAMDNFVHLALLPGTAAAVETLIEQLDDRRIFA TISGDASILIICRSAQYATDVLAELEAMVG >gi|225002509|gb|ACIZ01000070.1| GENE 65 66336 - 67166 701 276 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 4 275 3 274 274 328 61.0 7e-90 MTKVKKERVDVLLVEQGLFESREQAKRSVMAGEVYDQNNQRLDKPGVKIPGDAILHVKGK KMPYVSRGGLKLAKALKVFALDLTGKTVLDIGASTGGFTDVALQNGAKMSYALDVGYNQL AWKLREDPRVKVMERVNFRYSKPEDFTDGPVEFAMTDVSFISLKLILPPLKAILMPHGHA VALIKPQFEAGPAHVGKHGIVRDPQVHRDVLKMIVNFASATGYNVLGLAYSPIKGGEGNI EFLIHLQNADQTPGEIAPTVDIERTLSDAYAALKRP >gi|225002509|gb|ACIZ01000070.1| GENE 66 67163 - 68014 901 283 aa, chain - ## HITS:1 COG:slr0739 KEGG:ns NR:ns ## COG: slr0739 COG0142 # Protein_GI_number: 16329282 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Synechocystis # 12 277 23 293 302 201 46.0 2e-51 MSPTLTDWQTAINHALDEQLATVANPHLRAAMAYSVDAGGKRLRPLLLLSIVAMYDGVVA EALPAATALEFVHTYSLIHDDLPAMDNDDLRRGQPTNHKQFGEALAILAGDALLTDAFAI LSQHYPEKGAALVQILAEAAGSSGMVAGQVLDMDGEQTQYDLATLKQMHQAKTGALIQAG VAMGSLFVAIPEADQVALADFAAAFGLGFQIKDDINDVTKTTAELGKTADKDVAEHKNTF PELLGLAGAKQALATQFQQATAALNSLTVDAADLKSILAVLQA >gi|225002509|gb|ACIZ01000070.1| GENE 67 68011 - 68238 363 75 aa, chain - ## HITS:1 COG:no KEGG:LGG_01681 NR:ns ## KEGG: LGG_01681 # Name: xseB # Def: exodeoxyribonuclease VII small subunit # Organism: L.rhamnosus # Pathway: Mismatch repair [PATH:lrh03430] # 1 75 1 75 75 98 100.0 8e-20 MAEPTFEEKLAQLEGIVNQLEQGDVPLEKALDQFKVGVKLSQELEKTLKSAEKTVTEMVS DDGTTQPFQPKEGQQ >gi|225002509|gb|ACIZ01000070.1| GENE 68 68231 - 69112 631 293 aa, chain - ## HITS:1 COG:L0254 KEGG:ns NR:ns ## COG: L0254 COG1570 # Protein_GI_number: 15672836 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Lactococcus lactis # 1 281 155 412 417 202 39.0 6e-52 TVARRYPILQLILFPAIVQGDQAADSIVKQLNRIKTMSGFDAVIIGRGGGSIEDLWPFNE EKVARALAEMAMPIVSSVGHETDTTIADFVADRRAATPTAAAEIVTPVTLVDALNRISED QVRLVNAMHNRLKNAATRLQRSAQSVVLTQPDRLYDQYVQRVDQLRQRLQQSINNQLREN EHRLAMATAQLDGRQLLVKVANLQRQQVDDRRRLDRAMIALVTAKHQAVANAALGLDHLS PLKILGRGFAFVTDDAGKMLKTTADYQVDAAIHIHVADGQIGARVTTKENKHG Prediction of potential genes in microbial genomes Time: Wed May 25 19:59:34 2011 Seq name: gi|225002508|gb|ACIZ01000071.1| Lactobacillus rhamnosus LMS2-1 contig00074, whole genome shotgun sequence Length of sequence - 112492 bp Number of predicted genes - 113, with homology - 109 Number of transcription units - 58, operones - 31 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 - CDS 1 - 466 379 ## COG1570 Exonuclease VII, large subunit 2 1 Op 2 4/0.077 - CDS 459 - 1310 857 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Term 1390 - 1428 6.1 3 2 Op 1 10/0.000 - CDS 1434 - 1841 444 ## COG0781 Transcription termination factor 4 2 Op 2 4/0.077 - CDS 1843 - 2307 593 ## COG1302 Uncharacterized protein conserved in bacteria 5 2 Op 3 . - CDS 2326 - 2889 563 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 6 2 Op 4 . - CDS 2929 - 3093 69 ## 7 2 Op 5 . - CDS 3162 - 4229 993 ## COG0006 Xaa-Pro aminopeptidase - Term 4260 - 4296 5.0 8 3 Op 1 14/0.000 - CDS 4305 - 4595 500 ## PROTEIN SUPPORTED gi|116495126|ref|YP_806860.1| 50S ribosomal protein L27 9 3 Op 2 14/0.000 - CDS 4614 - 4964 583 ## PROTEIN SUPPORTED gi|229552492|ref|ZP_04441217.1| possible ribosomal protein 10 3 Op 3 . - CDS 4976 - 5338 607 ## PROTEIN SUPPORTED gi|229552493|ref|ZP_04441218.1| ribosomal protein L21 - Prom 5401 - 5460 5.7 11 4 Tu 1 . - CDS 5538 - 5777 276 ## LC705_01673 hypothetical protein - Prom 5910 - 5969 5.6 - Term 6059 - 6096 4.0 12 5 Tu 1 . - CDS 6104 - 6226 166 ## LGG_01692 hypothetical protein - Prom 6449 - 6508 8.2 + Prom 6428 - 6487 6.9 13 6 Tu 1 . + CDS 6512 - 7732 854 ## LGG_01693 hypothetical protein + Term 7836 - 7902 30.0 + TRNA 7818 - 7891 82.4 # Arg TCT 0 0 - Term 8039 - 8083 5.0 14 7 Op 1 . - CDS 8097 - 9731 1129 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 15 7 Op 2 . - CDS 9795 - 12188 2043 ## LC705_01679 x-prolyl-dipeptidyl aminopeptidase - Prom 12436 - 12495 9.3 - Term 12490 - 12537 10.1 16 8 Op 1 5/0.077 - CDS 12614 - 13954 1156 ## COG0174 Glutamine synthetase 17 8 Op 2 . - CDS 13973 - 14335 251 ## COG0789 Predicted transcriptional regulators - Prom 14450 - 14509 7.0 + Prom 14384 - 14443 6.9 18 9 Tu 1 . + CDS 14645 - 16738 1388 ## COG1982 Arginine/lysine/ornithine decarboxylases - Term 16778 - 16822 10.4 19 10 Op 1 . - CDS 16850 - 18112 1203 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance 20 10 Op 2 . - CDS 18096 - 19055 873 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase - Prom 19075 - 19134 3.6 + Prom 19032 - 19091 4.9 21 11 Tu 1 . + CDS 19124 - 19303 189 ## LC705_01686 extracellular protein + Term 19325 - 19374 7.4 - Term 19321 - 19353 2.1 22 12 Op 1 2/0.231 - CDS 19377 - 19784 509 ## COG0607 Rhodanese-related sulfurtransferase 23 12 Op 2 5/0.077 - CDS 19806 - 20768 1111 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 24 12 Op 3 3/0.154 - CDS 20761 - 21015 270 ## COG4483 Uncharacterized protein conserved in bacteria 25 12 Op 4 . - CDS 21012 - 21701 473 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) - Prom 21757 - 21816 2.4 - Term 21770 - 21799 1.4 26 13 Tu 1 . - CDS 21885 - 24011 1966 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 24123 - 24182 4.0 + Prom 24065 - 24124 5.2 27 14 Tu 1 . + CDS 24158 - 26782 1274 ## COG4485 Predicted membrane protein + Term 26822 - 26875 5.1 - Term 26809 - 26863 9.1 28 15 Op 1 . - CDS 26868 - 27188 400 ## COG4841 Uncharacterized protein conserved in bacteria 29 15 Op 2 19/0.000 - CDS 27148 - 27813 621 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 30 15 Op 3 7/0.000 - CDS 27806 - 28840 931 ## COG4585 Signal transduction histidine kinase 31 15 Op 4 . - CDS 28867 - 29571 619 ## COG4758 Predicted membrane protein - Prom 29638 - 29697 3.8 - Term 29750 - 29798 10.4 32 16 Op 1 4/0.077 - CDS 29848 - 30318 619 ## COG0782 Transcription elongation factor 33 16 Op 2 . - CDS 30385 - 31023 738 ## COG0572 Uridine kinase - Prom 31139 - 31198 2.2 - Term 31053 - 31111 12.9 34 17 Tu 1 . - CDS 31247 - 32398 1042 ## COG1559 Predicted periplasmic solute-binding protein - Prom 32418 - 32477 2.6 - Term 32496 - 32538 7.7 35 18 Op 1 40/0.000 - CDS 32622 - 35033 1968 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 36 18 Op 2 1/0.385 - CDS 35035 - 36081 867 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 37 19 Tu 1 . - CDS 36484 - 36909 226 ## COG1733 Predicted transcriptional regulators - Prom 36948 - 37007 5.2 - Term 37160 - 37199 1.0 38 20 Op 1 1/0.385 - CDS 37209 - 37712 340 ## COG1418 Predicted HD superfamily hydrolase - Term 37747 - 37778 -1.0 39 20 Op 2 . - CDS 37796 - 38557 207 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 - Prom 38776 - 38835 2.5 40 21 Op 1 2/0.231 + CDS 38876 - 39157 243 ## COG1254 Acylphosphatases 41 21 Op 2 . + CDS 39216 - 40208 759 ## COG0706 Preprotein translocase subunit YidC + Term 40223 - 40259 2.4 - Term 40349 - 40402 11.1 42 22 Op 1 40/0.000 - CDS 40426 - 41958 1310 ## COG0642 Signal transduction histidine kinase 43 22 Op 2 . - CDS 42009 - 42695 700 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 42769 - 42828 3.5 44 23 Op 1 . - CDS 42938 - 43099 61 ## 45 23 Op 2 . - CDS 43044 - 44462 1363 ## COG0362 6-phosphogluconate dehydrogenase - Prom 44497 - 44556 2.9 - Term 44624 - 44678 3.1 46 24 Op 1 . - CDS 44702 - 45250 635 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 47 24 Op 2 3/0.154 - CDS 45309 - 46445 971 ## COG1323 Predicted nucleotidyltransferase 48 24 Op 3 6/0.000 - CDS 46490 - 47227 573 ## COG0500 SAM-dependent methyltransferases 49 24 Op 4 6/0.000 - CDS 47224 - 47583 433 ## COG0799 Uncharacterized homolog of plant Iojap protein 50 24 Op 5 9/0.000 - CDS 47587 - 48186 601 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 51 24 Op 6 7/0.000 - CDS 48179 - 48820 540 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 52 24 Op 7 2/0.231 - CDS 48838 - 49149 229 ## PROTEIN SUPPORTED gi|146318023|ref|YP_001197735.1| RNA-binding protein 53 24 Op 8 6/0.000 - CDS 49235 - 50359 980 ## COG1161 Predicted GTPases 54 24 Op 9 . - CDS 50343 - 50876 415 ## COG2179 Predicted hydrolase of the HAD superfamily - Prom 50906 - 50965 3.5 + Prom 51297 - 51356 7.9 55 25 Op 1 3/0.154 + CDS 51386 - 52285 632 ## COG0346 Lactoylglutathione lyase and related lyases 56 25 Op 2 7/0.000 + CDS 52278 - 53246 972 ## COG0346 Lactoylglutathione lyase and related lyases 57 25 Op 3 . + CDS 53262 - 53903 413 ## COG0400 Predicted esterase 58 25 Op 4 . + CDS 53909 - 54877 963 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 59 25 Op 5 . + CDS 54953 - 55516 419 ## COG1611 Predicted Rossmann fold nucleotide-binding protein + Term 55556 - 55604 6.3 - Term 55543 - 55592 14.1 60 26 Op 1 . - CDS 55604 - 55960 592 ## PROTEIN SUPPORTED gi|199597224|ref|ZP_03210656.1| Ribosomal protein L20 61 26 Op 2 . - CDS 55995 - 56195 337 ## PROTEIN SUPPORTED gi|116495179|ref|YP_806913.1| ribosomal protein L35 - Term 56209 - 56251 10.3 62 27 Tu 1 . - CDS 56277 - 56774 405 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 - Prom 56936 - 56995 4.1 63 28 Tu 1 . - CDS 57274 - 59832 2106 ## COG0464 ATPases of the AAA+ class - Term 59854 - 59898 8.3 64 29 Tu 1 . - CDS 59905 - 60462 398 ## LC705_01729 hypothetical protein - Prom 60619 - 60678 3.4 - Term 60660 - 60699 2.3 65 30 Op 1 . - CDS 60710 - 61447 437 ## LC705_01730 hypothetical protein 66 30 Op 2 . - CDS 61516 - 61656 96 ## - Prom 61751 - 61810 5.4 67 31 Op 1 . - CDS 61851 - 62546 653 ## LC705_01732 hypothetical protein 68 31 Op 2 . - CDS 62539 - 62928 306 ## LC705_01733 hypothetical protein - Prom 62965 - 63024 5.9 - Term 63038 - 63074 4.0 69 32 Tu 1 . - CDS 63096 - 65069 2172 ## COG0441 Threonyl-tRNA synthetase - Prom 65098 - 65157 2.4 70 33 Op 1 8/0.000 - CDS 65606 - 66541 942 ## COG1484 DNA replication protein 71 33 Op 2 6/0.000 - CDS 66541 - 67887 1091 ## COG3611 Replication initiation/membrane attachment protein - Term 67899 - 67938 9.8 72 33 Op 3 1/0.385 - CDS 67963 - 68283 255 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains - Prom 68417 - 68476 4.0 - Term 68302 - 68345 -0.5 73 34 Op 1 4/0.077 - CDS 68485 - 69087 665 ## COG0237 Dephospho-CoA kinase 74 34 Op 2 4/0.077 - CDS 69084 - 69932 715 ## COG0266 Formamidopyrimidine-DNA glycosylase 75 34 Op 3 . - CDS 69942 - 72587 2379 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains - Prom 72643 - 72702 5.0 - Term 73109 - 73148 1.8 76 35 Tu 1 . - CDS 73154 - 73864 664 ## COG0670 Integral membrane protein, interacts with FtsH - Term 74639 - 74680 -0.3 77 36 Op 1 . - CDS 74706 - 75761 830 ## LC705_01743 cell surface protein 78 36 Op 2 . - CDS 75776 - 76114 182 ## LC705_01744 hypothetical protein 79 36 Op 3 . - CDS 76148 - 76936 912 ## LGG_01765 cell surface protein 80 36 Op 4 . - CDS 76968 - 80498 2460 ## LC705_01746 hypothetical protein - Prom 80653 - 80712 6.6 - Term 80793 - 80845 10.0 81 37 Tu 1 . - CDS 80913 - 82418 1136 ## LC705_01747 transcriptional regulator - Prom 82484 - 82543 4.4 - Term 82618 - 82661 8.3 82 38 Op 1 3/0.154 - CDS 82759 - 84069 1301 ## COG0773 UDP-N-acetylmuramate-alanine ligase 83 38 Op 2 3/0.154 - CDS 84069 - 84266 214 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 84 38 Op 3 . - CDS 84266 - 86485 1139 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Prom 86728 - 86787 7.0 + Prom 86675 - 86734 4.0 85 39 Tu 1 . + CDS 86791 - 87042 196 ## LC705_01751 hypothetical protein + Term 87090 - 87129 4.3 - Term 87078 - 87117 8.1 86 40 Op 1 2/0.231 - CDS 87153 - 87791 659 ## COG0073 EMAP domain 87 40 Op 2 . - CDS 87806 - 88123 342 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 88200 - 88259 5.6 + Prom 88162 - 88221 7.3 88 41 Tu 1 . + CDS 88406 - 88744 256 ## LC705_01753 hypothetical protein - Term 88711 - 88762 2.3 89 42 Tu 1 . - CDS 88814 - 89458 533 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase - Prom 89483 - 89542 1.5 - Term 89518 - 89564 8.0 90 43 Tu 1 . - CDS 89590 - 90363 528 ## COG0510 Predicted choline kinase involved in LPS biosynthesis 91 44 Tu 1 . - CDS 90466 - 90681 89 ## LC705_01756 hypothetical protein 92 45 Op 1 7/0.000 - CDS 90852 - 92066 942 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 93 45 Op 2 . - CDS 92063 - 92794 252 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 92825 - 92884 5.0 + Prom 92766 - 92825 5.3 94 46 Op 1 . + CDS 92892 - 93320 384 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 95 46 Op 2 . + CDS 93323 - 93682 363 ## LGG_01779 hypothetical protein + Prom 93701 - 93760 2.9 96 46 Op 3 . + CDS 93830 - 94732 990 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 94785 - 94846 14.0 97 47 Tu 1 . - CDS 95207 - 96175 771 ## COG3481 Predicted HD-superfamily hydrolase - Prom 96378 - 96437 5.0 - Term 96348 - 96417 17.4 98 48 Op 1 . - CDS 96489 - 96836 412 ## COG3679 Uncharacterized conserved protein 99 48 Op 2 . - CDS 96858 - 98900 1963 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 98922 - 98981 6.2 + Prom 98865 - 98924 3.8 100 49 Tu 1 . + CDS 99012 - 99848 602 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 99907 - 99961 8.5 - Term 99895 - 99949 12.3 101 50 Op 1 . - CDS 99976 - 100431 503 ## COG1438 Arginine repressor 102 50 Op 2 . - CDS 100647 - 102329 1667 ## COG0018 Arginyl-tRNA synthetase - TRNA 102547 - 102617 69.0 # Gly CCC 0 0 + Prom 102706 - 102765 9.2 103 51 Op 1 . + CDS 102785 - 103171 309 ## LC705_01770 hypothetical protein 104 51 Op 2 . + CDS 103184 - 103366 193 ## LC705_01771 hypothetical protein + Term 103408 - 103451 6.6 + Prom 103368 - 103427 3.4 105 52 Op 1 . + CDS 103532 - 104473 988 ## COG0167 Dihydroorotate dehydrogenase 106 52 Op 2 . + CDS 104470 - 106287 1230 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Term 106318 - 106362 8.1 107 53 Tu 1 . - CDS 106371 - 107054 665 ## COG4862 Negative regulator of genetic competence, sporulation and motility - Prom 107115 - 107174 7.6 + Prom 106878 - 106937 2.4 108 54 Tu 1 . + CDS 107014 - 107199 70 ## + Term 107226 - 107274 7.1 - Term 107213 - 107261 10.1 109 55 Tu 1 . - CDS 107336 - 107734 364 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 107778 - 107837 5.1 110 56 Tu 1 . - CDS 107985 - 108722 790 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 111 57 Tu 1 . + CDS 108791 - 109294 503 ## LC705_01777 monooxygenase + Term 109319 - 109346 -0.8 - Term 109347 - 109379 -1.0 112 58 Op 1 36/0.000 - CDS 109468 - 111543 1425 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 113 58 Op 2 . - CDS 111527 - 112297 218 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 112373 - 112432 2.7 Predicted protein(s) >gi|225002508|gb|ACIZ01000071.1| GENE 1 1 - 466 379 155 aa, chain - ## HITS:1 COG:SPy1500 KEGG:ns NR:ns ## COG: SPy1500 COG1570 # Protein_GI_number: 15675404 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Streptococcus pyogenes M1 GAS # 5 155 2 153 446 194 63.0 4e-50 MVETSQYLTVTALTQYLKRKFDADPYLAKVYLTGEISNYRKRVGNQYFSLKDDHAKIGAL MFRNAFSKLQFNLEEGMKVLVVGRVSLYEPSGEYRLIVERLEPDGVGALYQAFEQLKKKL AAEGLFERHQRPLPLFPQRVAVVTSPSGAVIQDII >gi|225002508|gb|ACIZ01000071.1| GENE 2 459 - 1310 857 283 aa, chain - ## HITS:1 COG:L76582 KEGG:ns NR:ns ## COG: L76582 COG0190 # Protein_GI_number: 15672835 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Lactococcus lactis # 5 282 14 291 294 296 55.0 2e-80 MATRLDGRVVSKKILGELKQTVAKLAQQDVTPTLAVVLVGSDPASEVYVRNKQRRAEEIG VRSLMYRLPEDTSQMTLLAKVAELNQDPDVDAILVQLPLPAGLDERAVIDAIDPNKDVDG FSPVSVGRLWTNEPTVVASTPYGIMALLDAYDIDVAGQRVVIVGRSNIVGRPLAGLMVNH DATVTIAHSKTRNLKQLTREADILVVAVGRPHFIGADAVKPGATVIDVGISRGADGKLHG DVDDDTVAPIAGALTPVPGGVGPMTIASLMAQTVALAKRRLHG >gi|225002508|gb|ACIZ01000071.1| GENE 3 1434 - 1841 444 135 aa, chain - ## HITS:1 COG:SPy1818 KEGG:ns NR:ns ## COG: SPy1818 COG0781 # Protein_GI_number: 15675648 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Streptococcus pyogenes M1 GAS # 3 135 8 147 150 108 42.0 4e-24 MESRHAIREAAFRALFALATNPEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDA ALTPQLKKGWTLSRLTKPDLIILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDEQSAKF VNGILANFIEAAPKA >gi|225002508|gb|ACIZ01000071.1| GENE 4 1843 - 2307 593 154 aa, chain - ## HITS:1 COG:BS_yqhY KEGG:ns NR:ns ## COG: BS_yqhY COG1302 # Protein_GI_number: 16079489 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 17 120 17 120 135 115 55.0 3e-26 MAEETNIILANRTDAQGTIEIVPEVLEVILGIAASQVDGVYQMRGTLGSSINAWFGRANH GKGVSVTVADDKITADVYVYLDYGVSVPKVALAMQEQLREQLLFMTDLTLDEVNVHVVGV IPEKTEPVNPEDLFKDDDTDDTDDAATTSGQDDE >gi|225002508|gb|ACIZ01000071.1| GENE 5 2326 - 2889 563 187 aa, chain - ## HITS:1 COG:BS_efp KEGG:ns NR:ns ## COG: BS_efp COG0231 # Protein_GI_number: 16079501 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Bacillus subtilis # 1 185 1 185 185 263 68.0 1e-70 MISVNDFKNGLTIEVDGDLWRIVEFQHVKPGKGSAFVRSTLKNLRTGAVQEKTFRSTEKV EKAQIDSKNMQYLYADGDNYVFMDTDTYDQLTLPGDEIRDQLNYLKENMNVKIIMHGNET LGIELPKTVDLAVKETEPGIRGNTSSGGSKPATMETGLVVQVPFFINNGDVLTINTDDGT YISRANN >gi|225002508|gb|ACIZ01000071.1| GENE 6 2929 - 3093 69 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRSQFIRPLFRTYLWYGWLYQGKIRIETVALCGDALQIIGVSSPVAVASVSAAC >gi|225002508|gb|ACIZ01000071.1| GENE 7 3162 - 4229 993 355 aa, chain - ## HITS:1 COG:lin1391 KEGG:ns NR:ns ## COG: lin1391 COG0006 # Protein_GI_number: 16800459 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 1 355 1 353 353 309 44.0 5e-84 MDRMTALQARILDKKLDGFFVTDAANVTYLTGFTGDESALLVTPEKAYFITDSRFTEQFK QQVQHAELVLHQDGLFKAAGKLANRLQLTHIGFEAVHLNYADYEAFDLLTQGTLVPTRDF VESQREVKDDDELALIKQAVAIAEKGYQHVLATIKPGMREIDIANDLDFYMRKLGASNVS FETIVASGARSAMPHGAATEKKIAKGDVVTLDWGCIYHGYMSDLTRTFAVGQPDPKLKTI YKIVYETNQKVQQALKPGVLGRTINDLAHHTIDDAGYGQYFGHGTGHGIGLSIHEGPGAW GPYLDVPAAKGNVVTDEPGIYIPELGGVRIEDDLVVTADGNQSLSQPAPADLLVL >gi|225002508|gb|ACIZ01000071.1| GENE 8 4305 - 4595 500 96 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116495126|ref|YP_806860.1| 50S ribosomal protein L27 [Lactobacillus casei ATCC 334] # 1 96 1 96 96 197 100 2e-49 MLKMNLQFFSHHKGGGSTSNGRNSAGRRLGSKRADGQFVKAGNILYRQRGTKIHPGENVG RGGDDTLFATADGVVKFERFGRDKKKVSVYPAAAAE >gi|225002508|gb|ACIZ01000071.1| GENE 9 4614 - 4964 583 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229552492|ref|ZP_04441217.1| possible ribosomal protein [Lactobacillus rhamnosus LMS2-1] # 1 116 1 116 116 229 100 6e-59 MIKAIFHRDEHGDIVSFELTGHADAGKTGQDIVCAAVSAVSIGAVNGVEALAGFKPDVIA DEVHGGHLQMKLKSVITGEQLHISQILLENLLLELQSIQDQYPDRLMITTKQLEQN >gi|225002508|gb|ACIZ01000071.1| GENE 10 4976 - 5338 607 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229552493|ref|ZP_04441218.1| ribosomal protein L21 [Lactobacillus rhamnosus LMS2-1] # 1 120 1 120 120 238 99 1e-61 MASLQGKSREAKQEVHTVYAIIKTGGKQYKAEVGEAIYVEKLDAEEGKQVTFDEVIMVAG EGDAKIGTPTVAGATVTGKVEKQGREKKVVTYKYKPKKHSHQKKGHRQPYTKVVIDAINA >gi|225002508|gb|ACIZ01000071.1| GENE 11 5538 - 5777 276 79 aa, chain - ## HITS:1 COG:no KEGG:LC705_01673 NR:ns ## KEGG: LC705_01673 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 79 1 79 79 102 100.0 3e-21 MIILLDILILLVTGALLITVTTQLIEPVNWIIDGILYVGLLLGNAAFGGWLTLFTIIYAL YMPALICGIWVYRKRHLAS >gi|225002508|gb|ACIZ01000071.1| GENE 12 6104 - 6226 166 40 aa, chain - ## HITS:1 COG:no KEGG:LGG_01692 NR:ns ## KEGG: LGG_01692 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 40 1 40 40 65 100.0 5e-10 MAYRIQLNMKTQEFIAIDPKNAKHVGKGDTIEKALQQLKR >gi|225002508|gb|ACIZ01000071.1| GENE 13 6512 - 7732 854 406 aa, chain + ## HITS:1 COG:no KEGG:LGG_01693 NR:ns ## KEGG: LGG_01693 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 406 1 406 406 795 99.0 0 MKKWIWGSIGGLIVLIVVGIGGWWLYDHFHYQQLVDQPADVKKWEADPRPLQSEQTAVKR IKEIPQSAQLGNRIAKGTKLVVIPGLRGAWSINAKTKRAGFGTNWVPQGVTQSKDSLFVS LYDGDHKLNSLILEINKKTGRYRKSFILKSKAHVGGITYDREKKRLLWSDDNSKLGGAGI SYASQRALDAYQAQVEKAPLDSTRIPLHLANRTSAITLYDHQLVFVKYGKNAINRSLIAL PVNDDNLPAAITEAQFNRLIRDLIPQLEGKNDTQSFQIISKKLMDDKIINSVNAGWDRIQ GIAIAKTGLTFVSQSNGAKPGKIWIRIPLDKSWSKLTFATPKSGDKIINVPNSVEEISLN ADDSQLALIFESGAKAYREEGSFWKRPHYMDRIMLLPISVQSNTKK >gi|225002508|gb|ACIZ01000071.1| GENE 14 8097 - 9731 1129 544 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 58 540 48 531 535 186 28.0 1e-46 MADHHAQRIGVRWVIKQLPFPLMVVLVIVGIVSTFEPILNGWVFGQLVKIDFHNMGTVGR YVLMATGAYFVTYVSLYLYLRIKQRVVRILNQALKTVYFTTSMAEAGTKVTEVSDTINQV TNVGKQIEQNYFVALMDMVQEIIGVIVVVIFIVKINAILSLIYVLISALSLLPSHFGRNR LAKNSEKWSAANAALVLNMKDLFQGRTDILNFKAWPAFFARFRQHLTKEEQDYERLNDFQ YSMQFISWMFAIASFLFPMFIGLWFMAQGWFGVTTSVIVTLTMTADSVIGGVRRLSGYQS QIVGTSQLRELPVVKAFAAPIADEKPVTLAEPESVKGHLTIKNLTVVRDQHLILDAVNLN LKPDAKILVTGPSGVGKSTLLKAITGQLTAQGTVLFNNKPLHAGDFVLVSQSVWLFSGTL RDNVTLYQDYSDEAVLRVLQVVSLDKELGTGILDFEIVDNGSNLSGGQAQRIGIARGLLR QSPVFLLDEISASLDQANADKIHKLIYALPVTVIEVAHHYNAELAQAFGVETYELVDHTL QLKK >gi|225002508|gb|ACIZ01000071.1| GENE 15 9795 - 12188 2043 797 aa, chain - ## HITS:1 COG:no KEGG:LC705_01679 NR:ns ## KEGG: LC705_01679 # Name: pepX # Def: x-prolyl-dipeptidyl aminopeptidase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 797 1 797 797 1533 100.0 0 MKLNQFARLTPDIDQQLKELARIGLPADPQAPFADTAAAMYAAFFPEAYQPAAQQDKFAQ VAVNSHQNLAEWLATKPTHMKRADFYNVALQLLGFEAFSDFDLSDPISFMTVTKLPSVAH DLLHTADLLQASYLLLTTRTKHLVSFLDDLANRGFFKDFQAQSSQPAHLLFNGKVQQVFD ARQAVREVVWIESDVDSDHDGQRDLLEATIYRPKATDRGLKVPVLFTANPYFHGTNDVTA ATHVPETVLAVKPHGASKAEVTAAPASKPKLPARPVTGETKQAAAYAEENSPYAFNDYFL ARGFAVVYSAGVGTRYSDGFRTIGGPEETDGAVAVIEWLTGKRRAFTNRTDGVAIKAWWS SGKVAMTGKSYLATLAIAAATTGVEGLKTIVADAGISSWYDYYRENGLVVAPGGYQGEDA DVLAVDTFSRQKSGGDMIRLKKAWEQHLAQMTRDQDRTTGAYTAWWDARNYRKNAANVKA DVVLIHGLNDWNVKPKNAIRFWQAIADLPIQKKLILHQGQHVYVHNVRSLDFLDMMNLWL THELLGVANQAEQVLPNVLVQDNVTPQTWSAYSDFANPAAEHVTTTANLKTDFESATDQF SDHATATFTAQHDTSASFEKAIITPNSAYVNSRLWLTQPVLEHDRVLEGIPHLELTLAVD APTGILSVRLVDLGKAKRFEENAATVGASGLQLGFDFKTTDIVEFKPANKETPSKLITLG HINLQNPKNAYEVQTITPGQFFHVSLDLQPTHYHLPAGRQLALIIHGADMAQTIRPTKVT HYQLDLAKSTLTLPFRI >gi|225002508|gb|ACIZ01000071.1| GENE 16 12614 - 13954 1156 446 aa, chain - ## HITS:1 COG:SA1150 KEGG:ns NR:ns ## COG: SA1150 COG0174 # Protein_GI_number: 15926892 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Staphylococcus aureus N315 # 1 446 1 446 446 667 69.0 0 MARKAITADEIRQTVKDENVLFLRLMFTDINGIIKNVEVPISQLEKVLNNKITFDGSSID GFVRIEESDMLLYPDLNTWLLFPWENDHGKIARLICSVHRPDGTPFGGDPRNNLIRVVNE MKDAGFTAFNIGPEPEFFLFKLDEDGNPTTHLNDRGSYFDFAPLDMGENCRRDIVLELEK MGFEVEASHHEVAPGQHEIDFKYADALEAADNIQTFKLVVKTIARKHGLYATFMPKPLHG INGSGMHINMSLFHDKGNAFFDPDTGDQLSETAMHFLAGVLRHAYALTAINNPTVNSYKR LVPGFEAPVYVAWSGKNRSPLIRVPQSRGLSTRLELRSVDPTANPYLAIAAILQAGLDGV KNQLKPEEAVDRNIYRMQDDERKANHIQDLPSTLHNALKALAADDVVKAALGKHLYQSFM DSKNLEWSAYRQQVSEWERQQYLELY >gi|225002508|gb|ACIZ01000071.1| GENE 17 13973 - 14335 251 120 aa, chain - ## HITS:1 COG:SPy1878 KEGG:ns NR:ns ## COG: SPy1878 COG0789 # Protein_GI_number: 15675697 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 102 1 109 123 98 50.0 4e-21 MAEIADLRTRSVLPIGTVMLLTDLTARQIRYYETQGLVKPQRNAGNHRTYSLNDVDELLE IRSQMADGFTLADVKRLKHPRHREDSDAEVRKVLRDELLNQSRLNQSPDPGPVIGFRQSH >gi|225002508|gb|ACIZ01000071.1| GENE 18 14645 - 16738 1388 697 aa, chain + ## HITS:1 COG:STM0701 KEGG:ns NR:ns ## COG: STM0701 COG1982 # Protein_GI_number: 16764071 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Salmonella typhimurium LT2 # 34 680 34 701 732 527 41.0 1e-149 MTLHLHVGYTASLSSPDIPADWLPFASHPLAAFAAVVLRATDHQALAQLNASALPLPVFV IGHLEYTPESQLKITQIERLDTASLAQIQTAATEYESAMVPGFLRDLLAYAAADPTSFAT PGHHSGHYDELAPAGYLLHQAYGETFFASDTSDVVTALGDMLTHGGTPLAAEQATACLYH ADETYFVTNGTTGSNNIVASALLTPGDLVLFDRNNHKSFYNAALVQNDARPVYLDTLRTQ RGLIGPVDLTGITGERLRQLAATVDPKKASEPRPFRLAILELETFDGIVPNVRQLLDLIG PLVDYIAFDAAWGGYEPFIPAMKAMDPLQLQLGPADPGIIVTQSVHKQQSGFGQASQIHK KDAHIKGQARYVSHEQFNHAYLKHVTTSYSYPLYASLVTNTAINQGPRGKKIWADAITAS LEFRRSLTDSRLFSAYENPQLAKTPPTAALTTSDAWAMTPGASWHQLPRLQPDQAFLDPG KVTVLLPESAELGVSGWLVDRYLLDHGIVPEKADLNSLLFLVTPGSAKADWQRLRQVLRQ FEADYFANKTVAETLPKLVAETGQAYTNLTLRTLGQKMSDFFRQAGLAKQQQLLFSATNN IPTAMTAQAADRCFVRGQFETIPLQAAAGRIAVAGALPYPPGIFVVVPGERWRPEAIQYF ETLFAGIKRFPGFTPEIQGVVTGKNGEPYVQVVADKE >gi|225002508|gb|ACIZ01000071.1| GENE 19 16850 - 18112 1203 420 aa, chain - ## HITS:1 COG:BS_ynbB KEGG:ns NR:ns ## COG: BS_ynbB COG4100 # Protein_GI_number: 16078807 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Bacillus subtilis # 13 413 9 414 421 449 53.0 1e-126 MSWTDKFDPALLKMVKEVDTQIAPQLAAIDARILENQDKVLTSFQKHHVAESYLTGSTGY GHNDEGRDVLEEIYADVLGGEDALVRPQLVSGTHAIGVALLGLVRPGDEILYITGKPYDT LQEVLGLAGNGIGSPKEYGVGVDYVDLLPDGAVDNEAVKSRLNAKTKVVAIQRSRGYATR DSFTVDQIAAMIKVVRSVLPNVWIFVDNAYGEFSETKEPLEVGADVMAGSLFKNAGGGMA KTGGYIVGKQDLIERISYRFTVPGLGGAEGATVGALADMYQGFFISPQTTGNAIKGVIFE AALFAKLGLDVSPKWDAPRTDLIQTVNFGNRDDMIKFAKAVQANSPVDSFVTPIPEKMAG YEDEVIMAGGTFVAGSTIEFSGDGPLRPPYTLYLQGGLTYAHIKLATMGAAQSTFFDKAD >gi|225002508|gb|ACIZ01000071.1| GENE 20 18096 - 19055 873 319 aa, chain - ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 7 288 4 289 314 255 47.0 8e-68 MDKPANRIVMIVGPTAVGKSDLGIYLAQQLQGEVINGDAYQIYRHMNIGTAKIMPDEMDG IPHHLLDIVDPQMAYSVAKFKAAAEAAITDVSSRRHLPILVGGTGFYLNSLRLNLPLGGK APPTAVRQRWQAALAENGEHWLWEQLQQQDPVAANQIESANTRRVIRALEVIELTGTRFS EQLQPQPRYETLVIGLTTARPVLYDRINTRVDTMMAAGLENEVANLLKTVPPDAQALQAI GYKELIPYFRGQADLATCVALIKQHSRHFAKRQLTYFRNQMPTHWFDLVAHPEEKTAVVA LVRDWLKQPAKGEKHELDR >gi|225002508|gb|ACIZ01000071.1| GENE 21 19124 - 19303 189 59 aa, chain + ## HITS:1 COG:no KEGG:LC705_01686 NR:ns ## KEGG: LC705_01686 # Name: not_defined # Def: extracellular protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 59 1 59 59 102 100.0 4e-21 MKHKFARGFFVGTLMTIGAVAGSVFAFKKNYIEPVETKVDEINENRRKANRKRFSAHQG >gi|225002508|gb|ACIZ01000071.1| GENE 22 19377 - 19784 509 135 aa, chain - ## HITS:1 COG:SA1364 KEGG:ns NR:ns ## COG: SA1364 COG0607 # Protein_GI_number: 15927114 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Staphylococcus aureus N315 # 36 129 32 125 128 100 51.0 6e-22 MLTYLLIIVGLFLIYWGFSWLWSYYQKSKFKAIGGEISPETFEHTMRKAQIIDLRERNEF KAGHILGARDLPYTQLRERLGEMRKDLPVYLYDKTGVLSLRAARRLRKNGFEKISWLKGG YDNWSGKIKKSPTNY >gi|225002508|gb|ACIZ01000071.1| GENE 23 19806 - 20768 1111 320 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 4 320 3 319 319 432 66 1e-120 MNDQKLIGVDLGGTTVKFAILTQGGEIQQRWSIDTNILDEGSHILPDIVTSINEHLDLYK MTPADFVGIGMGSPGSVDSEAGTIIGAYNLNWKTLQQARKVIESGTGIPFSVDNDANVAA LGERWKGAGENDPDVTFVTLGTGVGGGIIANGELLHGVAGSGGELGHVTVDPVNGYLCTC GKRGCLETVASATGVVRVARDMAEEFAGDSKLKETLDDGDEISSKIVFDLAKEGDRLALM IVDRVSFYLGLALANVGNLLNPKFIVIGGGVSAAGEFLLTRVDKYFKENTFPNVRETTSL RLATLGNTAGVIGAASLALK >gi|225002508|gb|ACIZ01000071.1| GENE 24 20761 - 21015 270 84 aa, chain - ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 62 1 62 67 62 51.0 2e-10 MKTYYDVLQLLKGFGTYIHVGKRVWDIELAALELDRLHQAKLIDDKVYLNAKIVLRHAHE QEERDPLNHELPLHSDQRRNDQHE >gi|225002508|gb|ACIZ01000071.1| GENE 25 21012 - 21701 473 229 aa, chain - ## HITS:1 COG:BH1421_1 KEGG:ns NR:ns ## COG: BH1421_1 COG0705 # Protein_GI_number: 15613984 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Bacillus halodurans # 7 179 178 349 349 142 43.0 4e-34 MNYANWRSRFQNSAYVTNGILAVTILVFILETLSGGSTNNAVLVAYGARANPLILYGQWW RLITPVFVHIGLTHILMNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNT LAAGASTAIFGLLGACLMLGDTYRENPVIRQLARQFLLLVVLNLAFNLFSSGVDIYGHIG GLLGGFLAAGMLGAPALGRMGTGRRLASTITLIFGLVALLLFGIQRGIV >gi|225002508|gb|ACIZ01000071.1| GENE 26 21885 - 24011 1966 708 aa, chain - ## HITS:1 COG:lin1477 KEGG:ns NR:ns ## COG: lin1477 COG0768 # Protein_GI_number: 16800545 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 13 690 17 687 721 413 39.0 1e-115 MKYIRTPQPKRNKSRIPFRLNLLFFIAFLLLAALVAQLAYLQILNGPRLAAEVDRTNKTV VTGNVPRGLIFDSKGRALVTNKANNAITYTKSVGTKSQQMYEIANQLAKLIDKPAENLTK RDYIDYYLARTKIAKQVTKQLPKKIQDLPSSKSDELYKYQVAYVRKHMPTLTPIEKEAAG LYKIMNGATQLSTVYLKNQNVTAHEVAVVGERLTQMPGVNLGTDWERAYPNGTSMTSIIG RVSNEKSGLPADELQAYLANGYARNDRVGTSYLEKAYENVLKGSKSQTQVEIGNDNQIVQ SVSKFKGQQGANLNLTIDSEYQKKVEKALEDTFSSIRSAGAGGLSDGAYAVAMDPNTGRI LAMAGQHQDVKTKKVEDDALGVINRAFVVGSAVKGATVLGALQDGVISVEHNTQEDTPIY LPATPVKKSVYPVGTFSSLDAASALEVSSNIYMMWLAMKEGHYAYSPNNYLKMDDNIFTK MRGYFSQFGLGIKTGIDLPGEIAGLEGKTHDSSGNLLVGSALDLSYGNYDNYTLIQMLQY ISAIANNGYRMRPYLVNSISQTLSDGSKGPVLSSTQPSVTSKIENTQAQIDLVKQGMWQV VHGTNGWTTATSLNTLNPGVAGKTGTAQGFARESDDSALTETITESFVGYAPAKNPKIAI AVIIPNLKAETTTPYQLQIAKEMFSDFYKMNDIKEDKGYSIHQKTVNG >gi|225002508|gb|ACIZ01000071.1| GENE 27 24158 - 26782 1274 874 aa, chain + ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 862 1 877 883 208 26.0 4e-53 MRQVWSKKYPLILSFLLPGLLVAFYFAIRGAFPFGSSSVLTVDLGQQYIDFFAYLRQTLL GNPGQLFYAFNKGLGGDMFGVFAYYLLSPFNLLVVLFPADLLDVAVFVIMILKISTAGLT MGWYAKCHAITGLMIPTFGLAYALSGWMLANSFNLMWLDAAILLPLIIQSLETLLNGGRV FAYIGWLTAAFIVNFYTGYMIAIFLVLYTGYWLGSHAVSWRQTAHAGLRFAWASILAGMN SAVVLLPTWFQLAQSKGTYTVKTIQWRFEYAPDQLLSKMLPGSFNFDQMPSGYPNFYIGA LGFVLAILFFISRHQTWRQKMAAALVTAFLVLSCMFEPLDLMWHGFQFPVWYPYRFTFIL CFWLLSLGISTLQKHQSALSFRTLVILLIVFGLIDGDVALHLNHYNFLTIGHLIFGIGTL LLVLVWLSLDHRRPFWFGFAIVLVDMSGSLILTLNQLAYLDHHAYHDYAAALIQGARTIN QTDNGFFRIGKTTIRTRNDPMTGNYRGADQFNSLLEPATPQFFGQIGQPEDDGSVAYTNG TLITDNLLGIKYFLTPTHTSAALPDAGQRPDLKWYQQLRKVGPWQVLKSPFAQQLGFAAD KALLNQQLYSDTPLANQSFILQAALGKNTTPYFAALPLPSPTLTGVRRVTTGTNPTFAKS GSGPHTVTYQFQPQTGKNYVLTLGSHFANHLVTLKQNGKTVTLPESFNDTITVNVTPANA AEVQTLTFRLNKKEAWFENIGLYQADTEQLIQDLKQLQTGGWHVTRVTATTLAANITIHK QNQMLQTTIPTAPGWQVKVNGQPVKPKTSLGIFMALPLKPGHYHITMRYRPPLLGWGSLI TIAGVLLTFCWWLVTSRKKRTGIIEAKRRTIIGK >gi|225002508|gb|ACIZ01000071.1| GENE 28 26868 - 27188 400 106 aa, chain - ## HITS:1 COG:lin0943 KEGG:ns NR:ns ## COG: lin0943 COG4841 # Protein_GI_number: 16800012 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 106 1 98 100 68 36.0 2e-12 MIKEMMGLQLAITDKASQWFHRELDLPAEGAGIRFFGKAYGKTQVHDGFSVGMTRDDHPD QPIMAVKKDGVTYFVNPTDAWFFENLIMTVDYDAHLDEPKYEFKEE >gi|225002508|gb|ACIZ01000071.1| GENE 29 27148 - 27813 621 221 aa, chain - ## HITS:1 COG:lin1021 KEGG:ns NR:ns ## COG: lin1021 COG2197 # Protein_GI_number: 16800090 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Listeria innocua # 1 208 1 210 212 266 71.0 2e-71 MIKVLIVDDHEMVRLGLSTYIGVQPDLEVVDQAENGQEGVEMALKDRPDIILMDLVMPVK DGIEATKEILKAWPQARIIILTSFIDDAKVYPAMEAGAASYILKTATAEEIAKAIRQTAS GERVLEPQVTTKMMNRMNHPQPQYDELTNREREVLQLIAQGKSNQEIATELFITLKTVKT HVSNILAKLDVEDRTQAAIYALKHGLVKNDQGDDGVATRDH >gi|225002508|gb|ACIZ01000071.1| GENE 30 27806 - 28840 931 344 aa, chain - ## HITS:1 COG:lin1020 KEGG:ns NR:ns ## COG: lin1020 COG4585 # Protein_GI_number: 16800089 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 104 344 112 352 352 241 54.0 1e-63 MILLVWTLLVEACLVFMLAKVTQHDFLRLLLANVLSAPLLVYLLIGALLISSGVTVIVLW RQRVVRSQLDSRLAQLNAGQYQAPIFNRSQQAEAALGKQPAALLEALRQKMIRLQREIER YSNTPVRFSGETREAILTGERHRLARELHDSVSQQLFAAMMMLSALRSVAARDPKQEALN KQLDTIQKVINEAQAEMRALLLHLRPTNLEGKSLKQGIIQLLKELQTKITIKITWQLDDI QLNAAAEDNLFRIVQELLSNTLRHAKADSLEVYLKRLQDMVILRMVDDGVGFDPKETSSN GNYGLANIKERAAAMGGTAKVVSVVGQGTSVEVRVPLSKDVAHD >gi|225002508|gb|ACIZ01000071.1| GENE 31 28867 - 29571 619 234 aa, chain - ## HITS:1 COG:lin1019 KEGG:ns NR:ns ## COG: lin1019 COG4758 # Protein_GI_number: 16800088 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 13 232 15 235 237 127 33.0 2e-29 MRRWQLFLGIEFALILWLGFQIITNPMALTTILFGVLFLFLGARWHRMRAFNVTFGGILL VLGIFINPAVWLILMVAGVFLIMVLTKPGMGFSMWDRKQYVAPVTQEPGKKAGRRTVHSW GNRQTIAPSYDWDDINMVVPAGDTIIDLGDTFLPKGDSVIMIRKGFGKTRILVPIGVGVA VEHATFYGRLHFENADSMLHSQSVTMYSQNYDDAPRRIHIITNVVVGDLEVLAV >gi|225002508|gb|ACIZ01000071.1| GENE 32 29848 - 30318 619 156 aa, chain - ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 154 4 157 160 162 63.0 3e-40 MADKSYPMTAEGKKKLENELEELKTKKRPEVIERIKVARGFGDLSENSEYEAAKDEQSTL ENRIVTIQTMLRYAEIIDAKAVAKNEVSIGKKVTFEEDGDEETYEIVGAAEADAFNGKIS NESPIAQGLIGRKVGDQVTINTPGGEMTVKITKVEG >gi|225002508|gb|ACIZ01000071.1| GENE 33 30385 - 31023 738 212 aa, chain - ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 4 210 3 210 211 252 60.0 3e-67 MQQKKAIVIGVTGGSASGKTSVSRAIFNHFSGHSLLLLAQDAYYKKSDKPFSERKKINYD HPLAFDTPLLKHHLEQLIHRHAVDQPVYDYKIHNRSDKTVHLEPKDVIILEGILILDDEA LRNMMDIKVFVDTDDDIRVIRRIRRDMVSRGRTLESIINQYLKTVKPMYHQFVEPTKRYA DLIVPEGGQNQVAIDLLVTKIKSILAERGLEE >gi|225002508|gb|ACIZ01000071.1| GENE 34 31247 - 32398 1042 383 aa, chain - ## HITS:1 COG:SPy0348 KEGG:ns NR:ns ## COG: SPy0348 COG1559 # Protein_GI_number: 15674503 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Streptococcus pyogenes M1 GAS # 3 376 136 520 524 273 41.0 3e-73 MDKRSPDVAGKRRQRQHEKKASQKIVGWVLGILFAVLVIVGLMGYRYVNSALQPVDPNGK TSINVTVPAGSSTKQIASRLEAKHVIKSAMVFNYYVKFHNIADFQAGRYQLTQRDNMDQV IQKLRVGGTSAAAAGQLLVKEGATVEQIATSVNKLAKSNQNLTSKKFLALMKDQTFFNQL AKKYPKLLSAAASAKGVRYRLEGYLFPATYSMSAGETTKDLVEAMVAKTDSVMQSYYKSV KKQGYSVQEVMTLASLVEREGVTQEDRRTIAGVFLNRIDAGMPLQSDISVMYALNTHKTH LTNKDTSVDSPYNLYVHTGYGPGPFDSPSEQSIAAVLSPNARSKDYLYFVANLKTGEVLY ATTREQHDANTAKFASDNAAADK >gi|225002508|gb|ACIZ01000071.1| GENE 35 32622 - 35033 1968 803 aa, chain - ## HITS:1 COG:SP0581_2 KEGG:ns NR:ns ## COG: SP0581_2 COG0072 # Protein_GI_number: 15900491 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 149 803 2 655 655 568 46.0 1e-161 MDVSYDWLKELVNIPVSPEELADKVSRTGIEVDDVKHPDAGLKKIVVGKVLAIKPHPNSD HLNLCQVDVGEDEPRQIVCGAPNVAAGQTVIVALPGARIADNVKIKKGKMRGEESLGMIC ALQEIGFNENVVPKAYLNGIYVFNEPLEPGSDALAALGMHDAVLDFEITPNRADALGMRG VAWEVGATYDEKPHFEEKLLTEGDRPVADYLSVEVKDAQDAPSYQLRVIDHVTVKESPLW LQRRLWNAGVRPINNIVDITNFIMLAYGQPLHAFDYAKLGSQHIEVRRARNGEPLTTLDG GEHELDDSDIVITNGQVPVALAGVMGGLDSEISETTTTVVVEAASFNPVNVRKTALKYNL RSEASSRFEKGINLADINRALDAAVAWMSDLGGGQAAKGTVSPTAVDAKDVVVDISLDHI NHVLGTTLSQDQVTRIFQQLGFGVEVADGLFAVAIPPRRWDIHIKADLVEEVARIYGFDN LPSTLPTTTMTIGEYTPAQKRIRRTRHLLEGLGLNQAITYGLTTEQAATRFKLQPGEPTQ VDSPMTKDHAVLRMNMVTGLLDVIKYNQARKETDVAIYEQGRIFTKTGDQVRPTEIEYLG GAITGHVAAKNWHQAARSVDFFYVKGIVMHLLEDYSLAEPVHFAVTQAVSELHPGQAADI LVGTQRVGFLGRLHPAFEHEQHLPATFVFELDLDALFAAPRQEKIAQPAPKFPAVTRDIA LQVADTVTNAEVMQIFQQHGGAYLKDVTLFDVYAGSHMAPGQKSLAYTLTYRRDDQTLTE EEVTQAFDRVKAALESDLGATIR >gi|225002508|gb|ACIZ01000071.1| GENE 36 35035 - 36081 867 348 aa, chain - ## HITS:1 COG:L0354 KEGG:ns NR:ns ## COG: L0354 COG0016 # Protein_GI_number: 15673911 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Lactococcus lactis # 1 346 1 346 346 473 62.0 1e-133 MDLQTKLEQLFQQNNEVIKKITSLDELNQIRVQLLGKKGPITSVLRGMKDLSADERPKVG AFANKVRDELSTVIETRKSQLEQAVINEKLKSETVDVTLPGDPVTAGTPHIIIQIMDDLE SFFMGMGYQVLTGPEVEEDHYNFEMMNIPKDHPARDMQETFYITNELLMRSQTSPMQART MEKHDFTKGPLKMISPGVVYRRDDDDATHSHQFHQMEGLVIDKHITMADLKGTLLAMCQH VFGADRTIRLRPSYFPFTEPSVEVDVSCFRCGGKGCPVCKYTGWIEVLGAGMVHPNVLRA ANIDADVYGGFAFGLGPDRFAMLKYGIDDIRSFYTDDLRFLTQFSQEG >gi|225002508|gb|ACIZ01000071.1| GENE 37 36484 - 36909 226 141 aa, chain - ## HITS:1 COG:lin1183 KEGG:ns NR:ns ## COG: lin1183 COG1733 # Protein_GI_number: 16800252 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 18 114 7 103 107 99 51.0 2e-21 MDATVTSKTECQSQQVALCPKFQHTFEILGKKWNGLILEVLLNNGNSRFKDIAQLIPRCS DRVLVERLKELEGEGLIDRLTHKDSALIEYALTDKGRALNSVMAAAHAWGDAWVTDEECH ANEKTKKRVRDAFFSYAIVDH >gi|225002508|gb|ACIZ01000071.1| GENE 38 37209 - 37712 340 167 aa, chain - ## HITS:1 COG:SPy0357 KEGG:ns NR:ns ## COG: SPy0357 COG1418 # Protein_GI_number: 15674508 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Streptococcus pyogenes M1 GAS # 7 154 3 149 166 159 55.0 2e-39 MSKKRDWQSDAEYVGYVADLLAKPEVQRLAEHPQHHYSNRLEHSISVSYQSYLIGKRLHL NVRAIARAGLLHDLFYYDWRKTKFDLGTHAFIHPRIALRNAEKLTELSPMEKDIIIKHMW GATVGLPKYKESFVVSLVDDYAAMDEVVVPWMHKLRHPIHTHLKALN >gi|225002508|gb|ACIZ01000071.1| GENE 39 37796 - 38557 207 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 26 251 3 243 255 84 25 2e-15 MEYISSPKNDRIKTAKKLTVKKHQKDAGRYLLEGRHLVQEALASGQTPYDIYATEKYVDD RALKPFYDKMTQISESVSEHLSDTETPQGIFAVMPRQAGQLPDPLSGQFLMLDAIQDPGN VGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAMQGSQFHVRIVSAKLMPVIKALQRAGI PVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGMDPVLLKQTDTNLYIPIRGQAESLNVA VAAAIMMFHLVGD >gi|225002508|gb|ACIZ01000071.1| GENE 40 38876 - 39157 243 93 aa, chain + ## HITS:1 COG:AF0818 KEGG:ns NR:ns ## COG: AF0818 COG1254 # Protein_GI_number: 11498424 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Archaeoglobus fulgidus # 4 91 2 87 89 69 45.0 1e-12 MVKLAKQIVVRGRVQGVGFRWATKMIADNLNISGTIENRADGSVFIQAAGEPLNLAKFIA QVKAGPNPYANVSTFEEKPLENVPDFNGFRVTG >gi|225002508|gb|ACIZ01000071.1| GENE 41 39216 - 40208 759 330 aa, chain + ## HITS:1 COG:L164312 KEGG:ns NR:ns ## COG: L164312 COG0706 # Protein_GI_number: 15672551 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 18 327 6 306 307 165 36.0 1e-40 MHKSKKIFALGAVGILPLLLSACSPTKQGVTLKPPTDPFFGTFYKIIGLPLQHLMEWIAG FVGSTSSYGIAIIVITLLVRLIVLPLMLRQQRTMTAYQEKQKILQPQLKIVQDAVKRAKT PEQQMAANNYMRKIYSANGTSMIPSMGCLPMLIQFPIFSGLYQAIAYSPEISHATFFGIQ LGHSSFIVTILATLPYIIVSLIMLQGVPPEQRKAMQATAFLSPIMTFVFCMMYNAGLGLY FGAGGIILIIQQAIVTYIVTPNIRKRLDAEMEENPPVEVVNEHTFDDWGAVTATAGSTGT QSRQQPVDPDAIDHQQLRKRNAGKQQRPRK >gi|225002508|gb|ACIZ01000071.1| GENE 42 40426 - 41958 1310 510 aa, chain - ## HITS:1 COG:lin1415 KEGG:ns NR:ns ## COG: lin1415 COG0642 # Protein_GI_number: 16800483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 1 480 13 478 483 303 38.0 7e-82 MKVKWAVTVGVGIFVTFVTFSMILYGAMRQILINQERRTVTDTLNTVVQRLSPVSGDLTM AQVVPRLEGTTPSDQSSLPTPSESHTRIFSDSVIQKLAQADVSVSVFSRDRTTIFQSRDT PITLGKVHGFEVQESHIGDFNGLVGTAPIYSAESSNLIGYVQVTNKLTAFHATMHEITLL IIGLSFAAILISILIGYVLATRFLSPIKLITNAIDVVNEEPQSTVRIPALKRNDELGDLV LEFNGMLDRIQRYIDQQGEFVQDVSHELRTPVAILEGHLQLLNRWGKDDPEVLDESLAAS LQEITRMKSLIQEMLDLTRADQVDVQFPNAVVDVHKVIQQVVADFRMIHPEFTFTLDDDL EQTTFVRMYRNHLEQVMIILLDNAVKYSTDRKEIHVSMAQNSGNGVAVAVQDFGEGIAEK DRRRVFNRFYRVDKARSREKGGNGLGLSIAQQLIESYHGQIEVDSALGHGSIFRIDLPTI SADKAKALQRQEAAKQAAAPKSDTSIKSNL >gi|225002508|gb|ACIZ01000071.1| GENE 43 42009 - 42695 700 228 aa, chain - ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 228 1 226 226 309 74.0 3e-84 MSKILIIEDEKNLARFVELELKHEGYETEVHFNGRTGLEAALAEDWDAILLDLMLPELNG LEVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIS IEGENNTAKQTTIKYRDLVIEKENRVVRRGDDIIELTKREYELLLTLMENVNVVLARDVL LSKVWGYNSDVETNVVDVYVRYIRNKIDRPGEPSYIQTVRGTGYVMRS >gi|225002508|gb|ACIZ01000071.1| GENE 44 42938 - 43099 61 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNVLIVMAFSITRGTTKLNSLKFKSKPIHLRLSVACELVFLIYPCHKGFDNQT >gi|225002508|gb|ACIZ01000071.1| GENE 45 43044 - 44462 1363 472 aa, chain - ## HITS:1 COG:SP0375 KEGG:ns NR:ns ## COG: SP0375 COG0362 # Protein_GI_number: 15900298 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 471 1 473 474 702 71.0 0 MDKPQIGVVGMAVMGKNLALNIESRGNTVAIYNRTGSKTKAVVEEHPDKKLVPSYKIEDF VASLEKPRRIIMMVKAGAGTDAVIKELLPLLDKGDVLIDGGNTFFEDTMRRSAELDKSGI NFIGMGVSGGELGALHGPSLMPGGQKEAYDLVAPILEAISAKADDGAPCVTYIGPNGAGH YVKMVHNGIEYGDMELIAESYNLMRHLLGLDVEEIAGIFSDWNKGELDSYLIDITADILT RKDDLGSDKPIVDVILDRAGNKGTGKWSSQSALELGVPQSVITESVYARYISAMKQERVA ASKVLPKPVGNVTIDKKEAIEMIRKALYFSKLMSYAQGFEQMRVASDNYDWNLQYGELAK IWRAGCIIRARFLQNITDAYDKKPDLQNLLLDDYFLNIAKNYQESVRDLVGLAVKAGVPV PGFSAAISYYDSYRAPVLPANLTQAQRDYFGAHTYERTDRDGIFHYTWYDEA >gi|225002508|gb|ACIZ01000071.1| GENE 46 44702 - 45250 635 182 aa, chain - ## HITS:1 COG:SP1280 KEGG:ns NR:ns ## COG: SP1280 COG1399 # Protein_GI_number: 15901140 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Streptococcus pneumoniae TIGR4 # 2 180 1 180 180 108 36.0 4e-24 MLKWTIQELMKHDQEPLHFSTTLDVKADLQDRDPEVLDVSPIQVNGDIVYDRGDFLVSVN LKGTLVVPSTRSLTPVTLPQDFTFSEIYLTDDGHADQYEDGEILMPLEDPELDLLPAVED HLLLSIPMQVLTPEEAASGEMPSGEDWEVMAEEDFDKAVKKEKQADNPFTKLKGMFPDDD QS >gi|225002508|gb|ACIZ01000071.1| GENE 47 45309 - 46445 971 378 aa, chain - ## HITS:1 COG:SP1742 KEGG:ns NR:ns ## COG: SP1742 COG1323 # Protein_GI_number: 15901574 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 377 1 360 365 202 35.0 9e-52 MQAVGMIAEFNPFHAGHAYALAQARKLTQADVVVVVMSGNYVQRGEPAIFDKWVRARAAL DHGADIVIELPVTGAVQAADQFAEAGVATLAALRVTALAFGTEHPELAYLDLARQLEKAP LTDPGFSDYTQTYATQLNAAYAKAAGITQTDPNFMLGLSYAKAVLALQVPMQLYPFGRQG VAHDALQLTANLASASAIRQRLRRGESLAKIVPADLIPVYSKQQQYGWSQYFPWLKYRLQ TADLAQLRQVATMAEGLEYRFTQQIDDAIDMTSFLKRVKSKRYTYARLRRLALAITLNMT IAAVEKARHLPQLHVLGFTPAGQQYLRQVKHQVGWPLLTRVSADMLAPNGILAMTHRADR LITTISGVEQNYGRRPLM >gi|225002508|gb|ACIZ01000071.1| GENE 48 46490 - 47227 573 245 aa, chain - ## HITS:1 COG:L28696 KEGG:ns NR:ns ## COG: L28696 COG0500 # Protein_GI_number: 15672211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 244 2 244 244 237 50.0 2e-62 MIYTTFAEVYDQLMDQSLYQRWRDYVVKRVKPSHQPLLELAGGSGFLAVLLAQSGYQVTD FDLSEEMLTLAEEKADAAGVALNLLQGDMRDLETLPEFPIVTCFDDSICYMQNLDEVQQV FTQVASKLPTGGDFLFDAHSLYQMDQVFPGYMYNYQTDDFAFLWNSFIGEHPHSIEHDLT FFMYDEALDAYKPLTETHKERTYPLADYLRALQNAGFEKIEVTDDFGNEPVGPESTRWFF HARKK >gi|225002508|gb|ACIZ01000071.1| GENE 49 47224 - 47583 433 119 aa, chain - ## HITS:1 COG:lin1521 KEGG:ns NR:ns ## COG: lin1521 COG0799 # Protein_GI_number: 16800589 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Listeria innocua # 8 113 7 112 118 122 59.0 1e-28 MIDAKTMLEIAVKAGDSKRAEDIVALDIRGVSLLADYFVIMSGTSDRQVQAIVDEIEEKE EAAGVEIRRIEGQKGSKWMLIDLNDVVVHVFMPEERQFYNLEKLWQDAPLVKVDQWVEA >gi|225002508|gb|ACIZ01000071.1| GENE 50 47587 - 48186 601 199 aa, chain - ## HITS:1 COG:lin1522 KEGG:ns NR:ns ## COG: lin1522 COG1713 # Protein_GI_number: 16800590 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Listeria innocua # 14 197 1 184 191 154 40.0 8e-38 MNEHQYPASLTHGLSRKEILNRLRNRLDQPRYEHCLRVEATAIELAKRFDQDVDRAGLAG LLHDYGKEISVETYKRVIIEDGFDPKLLQYGRGVWHGVVGIHFIQTEVGITDKQVLTAIA RHTTGDPEMTKLDECVFVGDFIEPQRSLPVEAKARKAAETNLEEASRIELENTLTYLIGA RQLVYPKTLLTYNAFLSKE >gi|225002508|gb|ACIZ01000071.1| GENE 51 48179 - 48820 540 213 aa, chain - ## HITS:1 COG:SPy0308 KEGG:ns NR:ns ## COG: SPy0308 COG1057 # Protein_GI_number: 15674475 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pyogenes M1 GAS # 25 212 23 210 210 230 56.0 2e-60 MQNVTLTQPVISVAMREQILGTHRRKQVGLFGGTFNPIHNGHLIMAEAAGTELGLEKVYF MPDNMPPHVDTKTAISARHRVNMVQLAIADNPLFGLEGIEIRRGGISYTYQTMQELHRLH PDTDYYFIIGADMVDYLPKWAHIDELVKLVTFVGVKRRGYTPASRYPILWVDAPLIDISS TAVRDRVQAGRSLKYLVPDPVIDYIQKEGLYRE >gi|225002508|gb|ACIZ01000071.1| GENE 52 48838 - 49149 229 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|146318023|ref|YP_001197735.1| RNA-binding protein [Streptococcus suis 05ZYH33] # 1 100 1 99 102 92 46 7e-18 MLTGKQKRYLRSLAMTTKPLIQVGKNGLGDAFVAGVKDAIETRELVKISLLPTADDTPQE VADTLQAAIAGLEVAQIIGRTVIVYKQAEKSEHRRISLEVNAR >gi|225002508|gb|ACIZ01000071.1| GENE 53 49235 - 50359 980 374 aa, chain - ## HITS:1 COG:SPy0306 KEGG:ns NR:ns ## COG: SPy0306 COG1161 # Protein_GI_number: 15674473 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 12 374 6 372 372 460 59.0 1e-129 MDIINDETERRCIGCGAILQTTDPKKPGYLPAATLAKAEADDDIYCQRCFRLRHYNEIAP VTLTDDDFLRLLNAIGESNALIVNVIDIFDFNGSVIPGLHRFVGDNPVILVGNKADVLPK SLNPNKLKNWLQQQAKAQGLRPVTTLLASAKKGFGVDELLTAIEKYREHRDVYVVGVTNT GKSTLINRIIKQLTGVEDLITTSRFPGTTLDRIMIPLDDGQSLIDTPGIIHRHQMAHFVG SKDLKLVSPTSVIKPATYQLNEGQTIFLGGLARFDYLRGGRQSFVIYADTQLPLHRTKLI NADEFYQKHVGGLLAPPQADEVRDFPPLVRFEFTPKEKSDLVFAGLGWITVPAGVTIAGY APKGVDVLLRKAFI >gi|225002508|gb|ACIZ01000071.1| GENE 54 50343 - 50876 415 177 aa, chain - ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 4 172 25 194 194 165 47.0 4e-41 MAVFEPTWLVTNIFSLTPASLKQQGIKAVLTDLDNTLMAWDHPEGTAKLTQWLSDLRNGG IQVVVVSNNNANRIHKAMAKLQVAYVARALKPLPVGITKARKELGLTRSEVVMVGDQLLT DIWAGNLAGVRTILTQPLVQSDAWNTRINRFFEGFVFKALAKKRQLNYQEDIHGHHQ >gi|225002508|gb|ACIZ01000071.1| GENE 55 51386 - 52285 632 299 aa, chain + ## HITS:1 COG:lin0752 KEGG:ns NR:ns ## COG: lin0752 COG0346 # Protein_GI_number: 16799826 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 4 290 5 291 296 228 42.0 1e-59 MTRLHHVSLLTGDAAATIRFYTDVLGLRLVKNTVNQENIHVRHLFFGDYQGTPGSVVTFF AIDRLGHRYDGPNQLGGIDLSIPTESLAFWHERLQQAGCVVTKIANWLALVDPADTPVRL IPYQRTLPDALTVPNDVPGSQQITGLINVDIPVADRDAEEAFFETMLGQAPEQHQFKLAA GNTLTIRPSLTAGTKRFGRGSMDHFALTVDHEEALPRLGTIAAQHGYEIEEFADRGWFKS LYVRDPADNRIEFATQAPGFTLDEPLEHLGERLGLPPKFEDRRAEIETYFKTKGVDFHD >gi|225002508|gb|ACIZ01000071.1| GENE 56 52278 - 53246 972 322 aa, chain + ## HITS:1 COG:lin0753 KEGG:ns NR:ns ## COG: lin0753 COG0346 # Protein_GI_number: 16799827 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 6 317 5 316 319 352 54.0 5e-97 MIEHPLLGMNHVTAMASDPQAIFDFMSKTLGLHLIKKTVNQDALDTYHFYFTDDQGTAGT DMTFFTFPNQEKGKKGTNMISRASFRVPSDAALDYWLKRFADKGVANDGINTQFDAKIIN FHDQDDQQYQLISDEHNHGVAGGTPWKHNDVPEEFAITGLGPVTVTIFNLGHMQYVLTEI MGYKQIAEDGNWSLYEVGDGGHGAQVILEHREDLPISVEGFGNIHHAAFSTDNRETLGTW IDRIKQYRLPQSGYVDRFYFKSEYFRAAPQVLFELATTGPGFLQDETYDEAGIHLELPPF LESKRAEIERGLTPVKTDWRGR >gi|225002508|gb|ACIZ01000071.1| GENE 57 53262 - 53903 413 213 aa, chain + ## HITS:1 COG:L79507 KEGG:ns NR:ns ## COG: L79507 COG0400 # Protein_GI_number: 15672058 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Lactococcus lactis # 7 204 3 205 206 152 40.0 4e-37 MAEENVNYTFVKGDPSVSPLLLLHGQGGDENDLLPIGKYLSPNSPMLSIRGRVQEQGMNR YFKHSENGGFDLNNLEQETTWLFKVLNELCQKFNIDYERFIVVGYSNGANVAARALLTRS DTFHTGIFFHPMALSTVDSKQDLSDVKVWMSHGDQDPIVPAQNFKVLDTYLEEQGAEVTI FRHDQSHNLNEAELANAKSWLANSGRLQDWQRR >gi|225002508|gb|ACIZ01000071.1| GENE 58 53909 - 54877 963 322 aa, chain + ## HITS:1 COG:lin0622 KEGG:ns NR:ns ## COG: lin0622 COG0604 # Protein_GI_number: 16799697 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Listeria innocua # 1 305 1 309 313 129 29.0 1e-29 MERFGFEQYGNPSVFESIEAPVPEPKAGQVQLQVLGFGLNPYDASLRRGEQAAFRKVKFP VVPGTDVLGRITKLGEGVSEFAVGDLVMNYRPIGGYSEFVTASTSKIYKKPTALSFLDAA ALPQVGLAAFNILHYMLALKPGQTLGIVGASGGVGAILVQLAKFEKLKVIAVAGEQHREY LRQLGADQIFSYTDELPENTADAVVNAVFGAADHGAALKLVKADGQYVTTAYADVDLSTK PTVEHLQLNPSKTYSVHDGFAYLVDVAQKWGLQVRVAQTFPFTVAGVIAGHEMLETHHAP GKLVVMQERHVTHPVRKEINHL >gi|225002508|gb|ACIZ01000071.1| GENE 59 54953 - 55516 419 187 aa, chain + ## HITS:1 COG:FN0535 KEGG:ns NR:ns ## COG: FN0535 COG1611 # Protein_GI_number: 19703870 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Fusobacterium nucleatum # 3 187 6 190 192 177 44.0 1e-44 MKIAVYCGANRGVDGAFVQAATRVGAWIAQRGDTLIYGGGKLGLMGAVAQSALKHGGKVI GIIPQVLADRGLALPNLTQLEVVEDMGTRKARMIALADADIALPGGPGTLEEITEAISFS RIGLNASPTILFNQNDYYRPLQQMYQTAVTQGFFDQDAFDNVLFSSDLPTISSFIANYQP LGVRQYH >gi|225002508|gb|ACIZ01000071.1| GENE 60 55604 - 55960 592 118 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|199597224|ref|ZP_03210656.1| Ribosomal protein L20 [Lactobacillus rhamnosus HN001] # 1 118 1 118 118 232 100 5e-60 MPRVKGGTVTRKRRKKVLKLAKGYRGAKHLLFKAANAQVMVSYRYAFRDRRARKRDFRRL WIARINAAARMNDISYSKLMHGLKVANVDMNRKMLADLAVSDPDGFKALADTAKKALA >gi|225002508|gb|ACIZ01000071.1| GENE 61 55995 - 56195 337 66 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116495179|ref|YP_806913.1| ribosomal protein L35 [Lactobacillus casei ATCC 334] # 1 66 1 66 66 134 100 2e-30 MPKFKTHRASAKRFKKTASGALKRGHAYTSHRFHGKTKKQRRQLRKSALVSHSDMKRIRQ MLSQMK >gi|225002508|gb|ACIZ01000071.1| GENE 62 56277 - 56774 405 165 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 1 162 1 164 166 160 47 3e-38 VNDSIRAREVRLISQTGEQLGVKSTRDALAIAEDANLDVVLVSPNAKPPVARIMDYGKFR FELQKKERDARKKQKTVTIKEIRLSPTIGEADFNTRLKNATKFLNKGDKVKVSVRFRGRA ITHKDLGRKVLEQMADAVKDIAAVETHPKMDGRSMFLMLAPRAEK >gi|225002508|gb|ACIZ01000071.1| GENE 63 57274 - 59832 2106 852 aa, chain - ## HITS:1 COG:BH2289 KEGG:ns NR:ns ## COG: BH2289 COG0464 # Protein_GI_number: 15614852 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Bacillus halodurans # 301 827 229 748 775 280 35.0 1e-74 MRHAISVGMGFGKTSFDDAVIKAEEGDVVIIDPGEYKSVDGVQCGTLEIHGAGQSPTDVV IYTEFDVKEGGMLKLQNVTLINTKPKSNVVYVDKGGQMIATSVAFYNRVAADYPVVYVSG TVSLTACELAHETRYANDGLAGTGLYLVDGAYGLISQCDIVDIDVNGSKLDAQRNQIHEN IHLEDNSEFNADTLYLTDRRRNYFMISASNGSVLQVDELVVPEGQSDANVDHSRMRVTRS NIDPLHTLNILVEDDADVDVPGAAISQPQVATSNGTPEEQPAQAEPPADDKPVETPAAPP AKAPSAPAQPPAEKPAIDQLHEMIGLTKLKKQVDTFIKVASFNQKRAAQGSKATAQSLHS LFLGNPGTGKTTVARLVGKIMYENGVLPSNNYVEVSREDLVSQNVGGTAVQTKKVLESAT GGVLFIDEAYTLYQEGGSVNWGQEAIDTILKYMEDHRDDLMIIFAGYTKQMQDFMNMNPG LTSRAPNVFEFEDYTPAEIAQIGLMDLHRQDYKVDKDHYTQAVTKAFIGNVDHSNGRWVR NYNEKLIQTFVVSLPEDSQNLFTIPNSIIDQLAGGDRQEKAAAVDALLGQLNGMVGLNSV KAFVNDLVKQVKVDQALQDKLPDATKPTYHMVFAGPPGTGKTTVARLIAQLFYNLGILPK DTVSEVARPDLVGQYIGQTAQKTGKAIRDAMGGVLFVDEAYQLSQGSENDFGKEAIETFI TELENNRDKFIAIFAGYTNDMNDFLEANPGLRSRVPLTLEFEAYTPDEIAQIVENIVTKH WTINTELLHTVVVKNYKQLPANKQSNGRWARNFADKLISQHKLWLADHLDKEPNLDVHHI SDALLVDSSSWS >gi|225002508|gb|ACIZ01000071.1| GENE 64 59905 - 60462 398 185 aa, chain - ## HITS:1 COG:no KEGG:LC705_01729 NR:ns ## KEGG: LC705_01729 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 185 1 185 185 343 100.0 2e-93 MDNKPKFGLGAQPGQKPKLAESAASKDQPKQAFGINAKPNTATPQGPKFGTEAAPKNTLS KGDQFKRIFTMQPIKFWIIQYAFGVAGLLLGMAMGLPLMLSVINLILYPFTVTILQSIGQ RRDKRSTLGDFFFGFSVAMIGESLWWILIYGAFRFIIFMLKFTFSFLLGTIGLVYIWAQA KKING >gi|225002508|gb|ACIZ01000071.1| GENE 65 60710 - 61447 437 245 aa, chain - ## HITS:1 COG:no KEGG:LC705_01730 NR:ns ## KEGG: LC705_01730 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 245 1 245 245 463 100.0 1e-129 MNGQIVLAISNILLGSRALLPSELDAALNYLFSGLSPVKQVEVRQQLRIARGSYTPLSQP KLLLSRLAEVAAYIANHRRLTFTYLSSQATEPTPLIHHAQPVALFFEVHYFYVAMLSQTR GGYWLYRLDRIGEIKAVSEGDKLDYATRFSLQDHRRQTYLLDSGDLMQIQFVYRYYPQTA LDQFPGSRVIRHNADGSVVIEAFARLDGALLWLLSQGAALKVISPPSLIKRMREELMAAL NQYKQ >gi|225002508|gb|ACIZ01000071.1| GENE 66 61516 - 61656 96 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQSNQRIAALMAQLMGGMTIRSVDIQKNMRSAAGLVNATLHISERR >gi|225002508|gb|ACIZ01000071.1| GENE 67 61851 - 62546 653 231 aa, chain - ## HITS:1 COG:no KEGG:LC705_01732 NR:ns ## KEGG: LC705_01732 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 231 1 231 231 441 100.0 1e-122 MSDEPQVKNPQLIHLMHLLRADQNDEPRAAFYAGLKTAKFMLPVGTARTGDPTVVLLTDD SGRDFLPIFTDQASFAQSPDHDHFAVATIDDCANFLYEDHDIHGVVINPYGENMVLTRAN LFYVAKPDQAEHGEAVRLSEPPKEAADLVSRLQTYLPKMATIHAAYLATMIRANDAKSLL LVVDTDENADLHALVAFAEAYLPETLQFHVSPADNELGRYVSGEFEPFYQR >gi|225002508|gb|ACIZ01000071.1| GENE 68 62539 - 62928 306 129 aa, chain - ## HITS:1 COG:no KEGG:LC705_01733 NR:ns ## KEGG: LC705_01733 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 129 1 129 129 232 100.0 3e-60 MFIALWASWLVLFFVTKILAAVLYFAVLLIYMKLPWRTPNQRGYWLIAHRGRGLLMIMGF VMLLTAVVAYGIANWWFGKIEFQPQGVAVFGSVGIVLLSWLLGLPKKLRAFREKINADQQ QDKGDDHDE >gi|225002508|gb|ACIZ01000071.1| GENE 69 63096 - 65069 2172 657 aa, chain - ## HITS:1 COG:L0357 KEGG:ns NR:ns ## COG: L0357 COG0441 # Protein_GI_number: 15673893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Lactococcus lactis # 3 642 2 644 646 815 60.0 0 MALDITFPDGSVKQFPDGTTVKAITEGISNSLAKKAVAGKLDDELIAYNEPIAHSGKLQI MTKDDAEGLTVLRQTAAFVLAAALKALYPDIHFGKGQAIEDGFYYDTDRADGQVSVDDLP TVQKKMEEIIKANAALEPVELSRAEAFDRFKDDPFKKQLVEAAGDPIKGYKLGDFVDFEE KVLLPSLKDLKHFKLLSVAGAYWQGKSSNPMLQRIYGTAYWSEKGLEDDAKRRKEAAERD HRVIGRDLDLFFVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYEHVYTPVLANLD LYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGM MHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEEFKKILRLIMDVYEDFNITDYSFRL SYRDPKNTEKYFDDDEMWTRSQSMLKGAMDDLHLDYYEAEGEAAFYGPKLDIQTKTALGN DETMSTIQLDFMLPERFNLTYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW LAPTQAVLIPVNNDLHLDYVNRIKRQMQAAGLRVKVDDRNEKMGYKIREAQTKKIPYTVV VGDKELNDAAVSVRRYGDEHTEEEAGNMFIDAMVAEVKNYSRDGKTKPGEANKVLGD >gi|225002508|gb|ACIZ01000071.1| GENE 70 65606 - 66541 942 311 aa, chain - ## HITS:1 COG:lin1595 KEGG:ns NR:ns ## COG: lin1595 COG1484 # Protein_GI_number: 16800663 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 1 306 1 306 307 239 41.0 5e-63 MEDMRKRLAMLMDSRQWRERYFKMVKEALQDPEVQTFLKQHEADLANDAIDRGTAKIYEF VSERNKIARGELPLAPGYQPKLVVANGLIDVAYEPTDAKVAADEEAKQASLVTSVNMPKD IRDASLDSYDPTDDRLDALLAANRFVLAVVADPKAFHQGLYLSGPFGVGKTYLLGAIAND LASKGGIATTLIHVPTFVVEMKNAIGNNSVLKKIDSVKRAPILMLDDIGAESISPWVRDD VLGIILQYRMQEKMPTLFSSNKSMAELTESLAGTDRGNSEMLKAKRIMERVRFLAKEITV DGENRRNPLAD >gi|225002508|gb|ACIZ01000071.1| GENE 71 66541 - 67887 1091 448 aa, chain - ## HITS:1 COG:lin1596 KEGG:ns NR:ns ## COG: lin1596 COG3611 # Protein_GI_number: 16800664 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Listeria innocua # 1 440 8 453 458 165 29.0 2e-40 MQRPDTFIPQAGFVLTKAGYFSDFDEKVAVSLYQPLVGPVPMALYLSLWQEVKDRALVTD RRPQLWLLDLLDIDIEQLFVARVKLEAVGLLRTYSQVDSLGRYYAYELYPPVSPDAFFKD DLLGLLLYDKVGENRYDELVAKFSLKPVRRPEWQEITASFLDVFRFDHDLSQEPPAVVAA KEAVTQKPASRPRLGSGDGYDWDLLKSLLANSNLQTGQLTKHQAALYQVAAFYGLQPPDF ARLISRATDVMTGKIDLNQLRRLAEQSYTRQQPHAKPQTPTQTPKVASADEALLKRAKSM PPRQFLTAAKQAKNARMYPANNELRAIQQLSERNVFDAPTINILIDYILRTNDSINQALL DAIANSWLKANVTSPEAALNQIHAFEQQKATDQKRRQTQTKGTRQEKLPDWAKEGYQPKK KKVSEADRQTLAAQLEKLRQLGDKGGKN >gi|225002508|gb|ACIZ01000071.1| GENE 72 67963 - 68283 255 106 aa, chain - ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 102 50 151 153 128 62.0 2e-30 MVIKKNGTREEFNREKILKGLIRAAEKRPVTMEQMQGIVDSVENQLRAIGENEVSSQAIG EYVMSKLADVDDVAYIRFASVYRQFKDMSVFMQELQDMMKKEKTKK >gi|225002508|gb|ACIZ01000071.1| GENE 73 68485 - 69087 665 200 aa, chain - ## HITS:1 COG:lin1598 KEGG:ns NR:ns ## COG: lin1598 COG0237 # Protein_GI_number: 16800666 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Listeria innocua # 5 196 5 196 200 159 45.0 3e-39 MTFLLGLTGGIASGKSTVSRTFKAAGFPVVDADVIARRIVEPGQPVLARIVQAFGPGVLR KDGTLDRAKLGDIVFSQPGRMEALNQINRPYLRAAINQALAQAKAGGAAIVVGDIPLLYE ADYADAFDGVAVVTVDPEVQLARLMTRDGLTKEAAQERIASQIPLSKKAAMADFVIDNNG TQAATIDQAKALIHRLEQLS >gi|225002508|gb|ACIZ01000071.1| GENE 74 69084 - 69932 715 282 aa, chain - ## HITS:1 COG:L0271 KEGG:ns NR:ns ## COG: L0271 COG0266 # Protein_GI_number: 15672335 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Lactococcus lactis # 1 273 1 270 272 258 48.0 8e-69 MPELPEVETVRRSLLPLVKDKKITAISTNWEKILINGLTAFQKQVVGAAVTTIDRRGKYL LIRLNNGMTIVSHLRMEGRYYVVSDAKTPLDKHDHVTFTFQDGSQLRYRDLRKFGRMRLI HTGQEQLVPALAKLGPEPTAATFSENDFAQKLKRHHKAIKSVLLDQTVVAGIGNIYADEV LWLSKLNPLQPANTLTKAEVHTLHDAIIKELDDAIAAGGTSAHTYVDAEGNRGSFQDALH VYDREGTPCDRCGTTIVKIKVGQRGTHYCPHCQPLHRRGQLA >gi|225002508|gb|ACIZ01000071.1| GENE 75 69942 - 72587 2379 881 aa, chain - ## HITS:1 COG:lin1600_2 KEGG:ns NR:ns ## COG: lin1600_2 COG0749 # Protein_GI_number: 16800668 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Listeria innocua # 326 881 4 559 559 603 55.0 1e-172 MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDAA LVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEADDII GTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLGITPT QIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIENLYANIDAMKTSKMKENLINDK DKAYLSKQLATIDRDAPVTIDLADVKYNGPDLAKLRDFYTKMNMNSLLKKIGGDVAKPSQ PVHYSVLDDQSILALTKTTEPLTFEIEMLADNYHTAEQVGFFIGTKEETYVSTDVSLLTI PEVAKWLGDSNRDLTVFDGKRNIVAAHRLGLHLPDIAFDVLLASYLINPDENSNDLGKIA EDHDYHDLPRDEDVYGKGAKRQVPEDKLLFEQFARKSQALFALRPDLTEDLAKQEQTDLF TDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQL GEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKA QMPDHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHPDWQIFSSDYSQ IELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG ISDYGLAQNIGISRKQAKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHRRRYLPQ IHSRNFNLRKFAERTAMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFE APTAEMAQLGQLVPKIMDSAVSLAVPLKVESHYGPTWFDAK >gi|225002508|gb|ACIZ01000071.1| GENE 76 73154 - 73864 664 236 aa, chain - ## HITS:1 COG:SPy0358 KEGG:ns NR:ns ## COG: SPy0358 COG0670 # Protein_GI_number: 15674509 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pyogenes M1 GAS # 8 233 10 229 229 104 34.0 2e-22 MQERRVVNEAGLTQFFSRIYTLMGSGLVVTALVSYLLGVTLKNDYINFVGAHPIIFWIMT ALPLILSFFVTGRRAQASPGYATLMFYLMSASFGFTFASVAMVAKTSNLAVALATTAVVF LVMSMVGHFGKRDLSKAGNIAMSALFGVIIMMFVNMFMGSSGMQMLISYAILIIFIVLTA WDTQRLKNLYLTAGSDGQATISTSSLAVVGALMLYLDFLNLFTAILQILGVGDNNN >gi|225002508|gb|ACIZ01000071.1| GENE 77 74706 - 75761 830 351 aa, chain - ## HITS:1 COG:no KEGG:LC705_01743 NR:ns ## KEGG: LC705_01743 # Name: yqbJ # Def: cell surface protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 351 1 351 351 677 99.0 0 MHVCVDGATQKMKKSIWIVGLLGWVMVLFSGMWQQSAQAAGEGFTVKAELPENQRDTSAS YFDLRVSPNQAQTLNVVIQNRQADPVTVLIKVNPAFTNDNGVVEYGEQVGRTDASLKVNF KTLLKAPTEVTIPALSQQTVPLQLKLPAQAFAGTVLGGLQFMAKPDEKATTSGAVANRYV YALGVVLTESDQVVPPNLRLREVKAVSDHGHNAIQANIQNFEPAMLKDLTVEGKIFEADG SKALYQTHKQQLKMAPNSNFNFKVDLNDEPLKPGKYRFEGVAKAAGRTWHFKKTFVVAQK EAADLNAAAVKKVPAQANAIDWRLLILAGLVVLLTINVIAFKRYARHQRGA >gi|225002508|gb|ACIZ01000071.1| GENE 78 75776 - 76114 182 112 aa, chain - ## HITS:1 COG:no KEGG:LC705_01744 NR:ns ## KEGG: LC705_01744 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 112 1 112 112 197 100.0 7e-50 MAVLIGIVVAAPATMTHADEKTSVAHVRILVEPMSDPKIVKVVTPDSPSDDRLPTSRQKP AMADTNKKKATKHAKLPALQESSYLITVLAGVFFWLGLLRAYYLYQSRKLKH >gi|225002508|gb|ACIZ01000071.1| GENE 79 76148 - 76936 912 262 aa, chain - ## HITS:1 COG:no KEGG:LGG_01765 NR:ns ## KEGG: LGG_01765 # Name: not_defined # Def: cell surface protein # Organism: L.rhamnosus # Pathway: not_defined # 1 262 1 262 262 431 96.0 1e-119 MTRYGYQALLATAALSAGLLAYGATTVSADDARTVTTQGRVKIMQTDTKPDILNPLAPQN KTPGTFAGVDNTTHAGGEGLTLDYVSRFNFGPLKLDAVNDAVAYAEADQWVTKDGKKTAA PNHIQVTDKRLGSDRWKVSLKATDLKSEEKDQAGKVTKTVVLPDAAISLLESSVIDGQAK DASARFGLNKAIKVYTGDAQAVDILSVSDGQTAKGTFMDLFNQKQADKGVALTVPAKSYA TEGLKSGDFSTTLTWTLTSAPL >gi|225002508|gb|ACIZ01000071.1| GENE 80 76968 - 80498 2460 1176 aa, chain - ## HITS:1 COG:no KEGG:LC705_01746 NR:ns ## KEGG: LC705_01746 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 13 1176 5 1168 1168 2296 99.0 0 MPSRFKKMWQVIKKTAGIGLIGVSILLTLTVLGGTQPDIKRFFHLTSNSVYAADDQPANP QRPRATITGQDAVYTLGEFFTPESHARLFKQATEPGGLSIPFADKRIWAVLPEKLKQATR SMGLQERYARFDTILAKTPVDLTFDSKFGVATGKGTAQTQYGDAVIAGASDPKNGRDAMG ALVFIDRDADGISKVIATSGKGNDNEPIAPHFGNRFYGSYEYVQMRDHQSINLSYFNIND AVANGTTRKQDFLNQWGLNRVQQARMGDIIKVCNAEGKISFARDSKVYQLKKENFPNIDQ AIFFQMTPAGFVPLHVNQLKTRPVDVPQNATDAELDAAFPKALNLRDNIIAECFAGRPDV SKPGKTKAVVRAIEKLYDGKYAKFDYEVELNVIPAGELTVKSGQYVLGERWGMQSIERMF TQAQQRDGTPVLWGDKQLYPLKAPDVEKHLQPGTQRIDELFKDAAAPIQFDSKTGHLTAR PTATANYGDAIILKGYELHSGRDAGGAFALIHDDGLKVVATAGGSKDNQPIHNRFPSEPY LGITHVPMKDEKVKNLSEVAVKWASGDLGKQDFLNLWGKDRVQPVQAGDIIKVVNVERKI RYTHDSQEQPLNDLANKNELYFEITDQGYQLLRVNQLVPQKANIPINASAAEMDLRLSQF FKLSDKSTYKIKGFKKRPDVSKLGDTTATVTVSQKYGKDKTIEADYDVPVAVVKRATFST QSQTLKLGEVVTTDTLGNMLKDALEYDDRRIQWGDKALSVTMPDKLAKLLRKDTKRLTKI SKPIDVTMKFEASTGTVLSTSPVLTDYGDALVFNGYELFTRNAGGALALVKEGNDWLIVA TDGAEDDNRNVHDVFAGEPYLSVSLYEAAGDVLNLQDPKQQVTSMAAQGDTPKQQLLDQW GDKRVVKAKLGDVVVVNHREDKVSVAHAGKREPLKKRANKRESLFEVTASGYKFLTLNQV SFKSLTIENNSDPQPIREAVTNTVKKQQPHLKVENIKFPDLKTVGHKTVTATVSQPSLTE ANKHISYDYQIPLEVTEGTLSFTQAPAALNFGTVKIDGQTLEVPRIGDTPMTIRIKDGRS QKKPWQLLIQQSQPFTDRHQHELKQELLFFRQDGHDYPIKLKQDQQVKAVASQTIQHTFT YDTQAGVLLKIPANDFDFTAGTYNFGLQWTLSDAPL >gi|225002508|gb|ACIZ01000071.1| GENE 81 80913 - 82418 1136 501 aa, chain - ## HITS:1 COG:no KEGG:LC705_01747 NR:ns ## KEGG: LC705_01747 # Name: not_defined # Def: transcriptional regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 17 501 1 485 485 905 99.0 0 MNLDDFLENDERREVQLLQLLLKAGAAGCLYTTAITTLGVSASTMGTTVAALQQRIRGFD AAADISVTDSGGQRCICLQTRTPVNFSELYRQLLVQSKSYRILLTLLQKGKVSADELAQL LYISKPAVFRRIKLLNQVLAAFSLQIKGGTLIGPEIALRYLYYRLLLNSHDYDTLASFTE AYSLRQFIAAFEAREHLKFSMIGRLKLSIWLDIALKRHFAAEQNRVKTSKEPLLSLDHNH LYRGIRNWLFDLARQYALVIDEFEVSSLYIFMTSMEILDLDDRDLSPVAQYLDEVTPEIK KIRAQLMARIELAYPAFKRRFTGDTQLRIRYILNQIQMHARFFSGHFHLFDGERINYQVD PAVLQHLEKMAGELAMLTFNHAQQSPSPEQLLFLKRRYLNVLLLIHVQSDAPLYVGICMH DDWSITAGMVARLRVALAGYYHVIIDNAVTDRVYDLLITNSATAARQIKAKERYLLTGIE NRYDLEQIMALLATIDQKRKQ >gi|225002508|gb|ACIZ01000071.1| GENE 82 82759 - 84069 1301 436 aa, chain - ## HITS:1 COG:L101678 KEGG:ns NR:ns ## COG: L101678 COG0773 # Protein_GI_number: 15674022 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Lactococcus lactis # 1 435 14 451 457 497 57.0 1e-140 MTEATYYFIGIKGSGMSALALVLHDLGHQVLGSDITQYTFTQKGLAAAGITMLPFDPANL KPGYTVIAGNSFTDEHPEIKQAKAMGLKIYRYHEFLGQLIKGYTSIGVAGAHGKTSTTGL LAHTLSGVAKTSYLIGDGTGKGVRDSKFFVFEADEYRRHFLAYHPDYMIMTNIDFDHPDY YHGFEDVYDAFETEANQVQKAIVAWGDDPWLRKLKAKVPVYYYGTSDRDDFQARNVKRDT KGSSFDAYFHDELIGHFFVPLFGEHSVLNALAVVAVAHMEKLDAGLIARELGNFSGVKRR FAEKDLKDMIIVDDYAHHPNEIKATLDAARQKYPDKAIIAVFQPHTYSRTQAYEPQYVQV LSQADQTFLTPIFSSAREKNGKIRSEDIVAQIKGAAVIQQADMRPLLKFHHAVVVFMGAG DIQKYEKAYEDLLSQE >gi|225002508|gb|ACIZ01000071.1| GENE 83 84069 - 84266 214 65 aa, chain - ## HITS:1 COG:SA1562 KEGG:ns NR:ns ## COG: SA1562 COG1674 # Protein_GI_number: 15927318 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Staphylococcus aureus N315 # 3 59 1213 1269 1274 60 56.0 7e-10 MPEVLDYLAGERHISTSKLQRVFSIGYNRAANLIDTLEAKHLVSAAKGAKPREVYYTQAK EEEHS >gi|225002508|gb|ACIZ01000071.1| GENE 84 84266 - 86485 1139 739 aa, chain - ## HITS:1 COG:lin1647 KEGG:ns NR:ns ## COG: lin1647 COG1674 # Protein_GI_number: 16800715 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Listeria innocua # 264 723 245 698 784 442 55.0 1e-123 MAHYDGPAFLHQNKSPASQSGETTANWQQSENDAYQLPPQITHEATHEVNPQKVAEAQAD LRAMTHPRADHQRNGLARLTTPNSTVRNVQRDQTDYRQIAAVLKPDEQSLYLFAGHGVSP SSQAATDPVAIAVASSVAAPEATRSSESLETSASSMASITESPDEHSEATDSKQQTEADG ATQQASNETTSSSSASDNTSAPHPPIQSVASVSGSEASRHTAEIATSLTSMGKSHGPNSR KAARIEALRRKHEAKKLRKALAAQKARESASEQKDNSQKAFSRPQSTAGTTASVTQPTKS SLSAETTEQQAVSSQLPASMTTPEATPVSSGDQGESSETIPPVRLLSPPVVADQAAQQDW VHHQRQRLDQTLQAFNVDAHVVADTIGPTVTQFQVSLASGVKVSKITNLNDDLKLALAAK DIRIEAPIPGKNTVGIEIPNLKPRPVMLREVLDTPAFQKAKSPLTIALGVDLFGQPVVTN LAKMPHGLIAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPKAVELAGYNGLPHLVS PVISDPKAASAALKWVVTTMNDRYKKLAAAGVRNLEQFNAKAKRHHEFAQVMPYLVIIID ELADLMLAAGTEIQDDIARITAKARAAGIHLLVATQRPSVDVITGTIKNNIPTRIAFMTA SQIDSRTIIDTAGAERLLGRGDMLYLGNGASQPIRLQGTFVDREIDSIVAYVKSHRGPRY LFDPAGSSPLRLAIRMKMN >gi|225002508|gb|ACIZ01000071.1| GENE 85 86791 - 87042 196 83 aa, chain + ## HITS:1 COG:no KEGG:LC705_01751 NR:ns ## KEGG: LC705_01751 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 83 1 83 83 138 100.0 8e-32 MLFLILDVLLIICGIVLLVSCYRFSEEEFREALNDWALNTFVFAPVLGWIGKKMNVRSPY RKAMFLLGLAMTVIFALNLIAGL >gi|225002508|gb|ACIZ01000071.1| GENE 86 87153 - 87791 659 212 aa, chain - ## HITS:1 COG:L195751 KEGG:ns NR:ns ## COG: L195751 COG0073 # Protein_GI_number: 15672372 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Lactococcus lactis # 2 202 1 203 208 171 43.0 7e-43 MLITSYNQPAFGDTLIAITGPDTETQTSQRSGDIVAILDDQNHVIGYNFFNVSQWLGAVD GHGQIQLTAEQVAQLNVAIQQADLPGQLEVDEKPKFVIGKIVDFKDHPDSDHLHVTQVDI GDEQVQIVCGAPNAALGQTVVVALPGAMMPDGKIIWQGSLRGVASYGMISSARELAIPGA PQRRGILVMPDNLAAGSPFDAKEAAAVVAAQA >gi|225002508|gb|ACIZ01000071.1| GENE 87 87806 - 88123 342 105 aa, chain - ## HITS:1 COG:lin1650 KEGG:ns NR:ns ## COG: lin1650 COG0526 # Protein_GI_number: 16800718 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 11 104 10 103 103 110 50.0 8e-25 MKELGSNAAILDEVKKPGKKMLFFSANWCSDCRFIKPAMPEIEKDFSDYEFVAVDRDKNL EVAQEMGVFGIPSFIAFKDGKEIGRFVNKDRKTKQQVEDFITGLN >gi|225002508|gb|ACIZ01000071.1| GENE 88 88406 - 88744 256 112 aa, chain + ## HITS:1 COG:no KEGG:LC705_01753 NR:ns ## KEGG: LC705_01753 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 112 1 112 112 209 100.0 2e-53 MSISRSRLLSGIGLSLAFIATGTALAGYWCHRNQRISNRILTKVKRNFAKEGTIETSWIE LQPLTINDHHQRIQVYRGGMILRHSKLHRQIAFLALADGSLWRIKQQPITTA >gi|225002508|gb|ACIZ01000071.1| GENE 89 88814 - 89458 533 214 aa, chain - ## HITS:1 COG:L156302 KEGG:ns NR:ns ## COG: L156302 COG0220 # Protein_GI_number: 15672731 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Lactococcus lactis # 1 212 1 213 217 229 49.0 4e-60 MRLRNKTWAKPLIAEHPELILVRPEKMPGQWQSRFKQNQPLYLEVGSGKGQFIVAMAQAH PDCNFIALELQEAAIAMILKKQAVLKLPNLQLVLGDGADLTDYFAEAEISGLFLNFSDPW PKTRHEKRRLTYRRFLQQYQTIMKPDARLQFKTDNQGLFEYSLVSMNNFGMTFELVSLDV HHDQRIPDNVPTEYEEKFSADGGRIYELVARFKA >gi|225002508|gb|ACIZ01000071.1| GENE 90 89590 - 90363 528 257 aa, chain - ## HITS:1 COG:lin1657 KEGG:ns NR:ns ## COG: lin1657 COG0510 # Protein_GI_number: 16800725 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted choline kinase involved in LPS biosynthesis # Organism: Listeria innocua # 9 248 10 252 260 177 37.0 2e-44 MEFELDAGWSLQPAGGSTGSAFLGVYANQKYFLKRNASPFLAALSVEHITPRLLWTRRVS TGDVLTAQEWLDGETLTREQMMQPVVAKMLAQVHHSSLLKRMLRQVGGQILDPARLRHDL LQDFPRDLTNQPRVKRALSDLQQWLPRVTVQSVCHGDLNHKNWLRAGGRLYLVDWEQVAL GDPAYDLADVMAHYGHRNSWPAFLRAYGANNDESLENRLYWYGDLHLLNDMKAAAQHQRT DEVAQVLQQFETLQSTH >gi|225002508|gb|ACIZ01000071.1| GENE 91 90466 - 90681 89 71 aa, chain - ## HITS:1 COG:no KEGG:LC705_01756 NR:ns ## KEGG: LC705_01756 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 71 1 71 71 108 100.0 4e-23 MAKPGPITPKATYVPVSNRAGSHSLSITRSPAQESACKDLERNGQSPAITLKATYIPIPK RAGSRSLCLLT >gi|225002508|gb|ACIZ01000071.1| GENE 92 90852 - 92066 942 404 aa, chain - ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 4 401 10 406 407 170 28.0 4e-42 MIDLWRARLRQHVQAQQKYLRLVFNDHFVLILLILFGGALYVYSQIVKTLQPSWWLALCL AIIFTGLLSFGQLATLAEAPDQIFLLPKAEAFRQYLLKSRHYSLLLPGVLLTFASLAMWP LFAQLGKDPASATVTLLMAVWLFKDLDLWLQLLKRYQLPTQWHHQRLLLLAIAGAAFFAG FYLHPAVTLLVALILDLVFRWQLRTILDQGRLNFMALIKLEDDRMGRVYRFYNLFTDVPG LANSVHRRRYLDGFLKLVKPRQATTWLSLYLRGFLRGGEYLGLYLRLLVIGAVIVAVLSP WWLALGFAILFLYMVGFQLLPFYYQYDEIVFTHLYPVAPDQKPAAFERLLTVLLLIEVAT FTLVTLLRLQWLAAGAIFICGVVFVWGFTRWYARMRLKQHHVVV >gi|225002508|gb|ACIZ01000071.1| GENE 93 92063 - 92794 252 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 3 223 5 226 311 101 30 1e-20 MTLKIEGLTGGYGNLTVLRDVSFTVPSGKIVGLIGLNGAGKSTTIKHIIGLLTPQAGTID LDGTTLKQNPTDFRANLAYVPETPVLYPELTLREHLEMTIMAYDLDAKAAWEAADRMLKK FRLDNKLDWFPAKFSKGMQQKVMIVAAFMTHAKLFIIDEPFTGLDPLAIHDLLNLVTEKK QEGASILMSTHILATAQQYADEFVLIKAGKVRATGDMASLKQQFDLKDGSLDDIYMKMTE EEA >gi|225002508|gb|ACIZ01000071.1| GENE 94 92892 - 93320 384 142 aa, chain + ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 1 141 1 140 140 171 58.0 4e-43 MNDCIFCKIVRNEIPNVAVYEDDVVKAFLDITQVTPGHTLIVPKKHVPDIFAYDTELAAA VFERVPKIARAIKASNPAIKGMNILNNNGKVAYQSVFHSHIHLIPRYSNQDDFGMHFGDH SAQYDTSKLEEVAAKIRTQLEA >gi|225002508|gb|ACIZ01000071.1| GENE 95 93323 - 93682 363 119 aa, chain + ## HITS:1 COG:no KEGG:LGG_01779 NR:ns ## KEGG: LGG_01779 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 119 1 119 119 209 100.0 2e-53 MKFRDGLLLGALTGTIYGLLTAKKTGRQRQQAIAAYFNGIATGVGQVRQSINQVSAALTQ LSAEVDQTLKPAMKDITASVETFEFETAPRTEAIKEHVDNINDAITGLEENQSAHPTKP >gi|225002508|gb|ACIZ01000071.1| GENE 96 93830 - 94732 990 300 aa, chain + ## HITS:1 COG:lin2322 KEGG:ns NR:ns ## COG: lin2322 COG0760 # Protein_GI_number: 16801386 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 2 298 3 290 291 141 38.0 2e-33 MKKWILGVVGLFVAVTLAGCSSSTVANMKGAKVTKDEYYDAMKKTTTGQATLRNMIVLKA LEQQYPNKVSDKKVNSQFNKLKKQYGSSFDSTLEQNGYTESSFKDQIRTTLYSEVALKDM KKPTTKQIESQWKKYQPKIQVQHILVKTEDEAKQIISDYQKDPTEKNFESLAKKNSIDTG TKNKGGKLAAFDNTDTSLDSTFKSAAFKLKKAGDITTTPVKTQYGYHVIRVISIAKKGTM KEHKKDLEKQIYTSWQSDSTVMNGIITKVLKKANVSIKDNDLKDVLSSYLSTSSSSSTSK >gi|225002508|gb|ACIZ01000071.1| GENE 97 95207 - 96175 771 322 aa, chain - ## HITS:1 COG:SPy0267 KEGG:ns NR:ns ## COG: SPy0267 COG3481 # Protein_GI_number: 15674447 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pyogenes M1 GAS # 19 312 17 310 312 325 51.0 9e-89 MAKRLFDYHNEEDVRLPVLIKSAEVRVAKNGKKFIAMIFQDNSGHISGKFWDATENDIAQ FKAGEVVQLSGKRELYQGNPQIKIYSMRLATQEEGNDPRTFVERAPEAPNAMEEELNSFI FEITNANWNRIVRKLIQDHKKAFFSYPAAKSNHHAFAGGLAFHTLSILRLAKNVVAQYSS LNKTLLYAGAILHDLGKTIELSGPISTEYTVPGNLIGHIVLIDEQIVLAAHQLKIDINSE DMLLLRHVVLAHHGLLEYGSPVRPQLLEAQVLHDLDEMDASINMMTTAYQHVDPGTFTER LFGMDNRRFYRPTNGQTYPDPH >gi|225002508|gb|ACIZ01000071.1| GENE 98 96489 - 96836 412 115 aa, chain - ## HITS:1 COG:BS_yheA KEGG:ns NR:ns ## COG: BS_yheA COG3679 # Protein_GI_number: 16078045 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 3 113 4 114 117 59 35.0 2e-09 MANVYDTANQMAADIKTTQEFQDLKKAFDLLKLDTVAYGLFQQFQQKQYEMQQKSMQGQD FTDEEVKSLQALGDKMRDIQPIQNLMAKEQGLSQMMDELNKIISQPIIDVYQSKP >gi|225002508|gb|ACIZ01000071.1| GENE 99 96858 - 98900 1963 680 aa, chain - ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 4 675 23 705 714 613 49.0 1e-175 MQVLSRVWQSIRWFFRRFQVIRWLILLGLTVILIFSAWFTYKAKTADVQNIKSTLQTKTV IYDANNEEAGTLYGQKGTYVELSAISPQVQNAVISTEDRTFYSNGGFSIKGILRSALNYV IHHGQIMGGGSTITQQLAKNTLLTQKQTMLRKAQELFMAIQLNKVYSKQDILAMYLNNAY FGNGVWGVQDAAKRYFGKNASQLDASEGAILAGMLRNPSYYNPADHKDNAISRRNVVLQL MVDNHKLTQAQANAAKAQSVQVVDAFSNANAQKYPSYFDSVIEEARSEGISVDDILNKGY KIYTNLDQTYQQNLQTSFEQDWAFPANAADGKQVQGASIILDPKTGGVRAVVGNRGEHTF LGFNYATQLRNSPGSTIKPLMVYTPALENGYHYDSILKDEKLSYGKNNYTPTNATGTYLG TVPMYQALADSINAPAVWLLNKLGVQKGVASLDRFGIQLKSSDQNLAAALGGLKNGVSPL MLARAYAAFANDGKLPTTHFIRKIVDASGETVVDNSHPATRQIMSKKVAQEMTSMMIGTF NEGTGKTAKPSGYTIAGKTGSTEVPSSWGYGTKDQWVVGYTPDIVNATWIGYPTTDSQHF LQGTSTSGVAPLFKLEMSKLMPNTPQTAFDTKDAAQMASIQTPGKSDDTWQGIQDSIDKG IDSAKETVGKWYDNIKSWFK >gi|225002508|gb|ACIZ01000071.1| GENE 100 99012 - 99848 602 278 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 15 273 18 279 285 236 48 4e-61 MLFQTSAIAQNHASLRDQLQDWLIPRKRQHQMRVAQTIQVNGHYRHFNEPVKNGDLISLT YDELVHRTYVPETPHLNTRYEDDDLLIVDKPAGMKTHPNQPGETGTLMNQAAAYLAPFPA LITHRLDMATSGLLVIAKNPLAQAIINRQLTTKTMHRDYLAVVPSGIPEKGTIQAPIGHD PDDKRKRMIRADGAFAVTHYHRIAETADTATIELNLETGRTHQIRVHLASIGFPIIGDPL YAATETATRMQLHAFRVRLIRPLTIEPLTVTSPSPFRQ >gi|225002508|gb|ACIZ01000071.1| GENE 101 99976 - 100431 503 151 aa, chain - ## HITS:1 COG:BH2777 KEGG:ns NR:ns ## COG: BH2777 COG1438 # Protein_GI_number: 15615340 # Func_class: K Transcription # Function: Arginine repressor # Organism: Bacillus halodurans # 1 145 1 145 149 103 37.0 9e-23 MNKSERQAALAWIINQKPIATQEELLAALKAAGIDATQATISRDIREMQIVKAQDAKGTL RYTIFRGSEESQLERLGRSIREVGLTITRVQFLNVIKTLPSNGNLLAAIIDDIDFDQVVG TIAGHDTIVVISPDEKQAKWFEEAYRHAFDR >gi|225002508|gb|ACIZ01000071.1| GENE 102 100647 - 102329 1667 560 aa, chain - ## HITS:1 COG:L0344 KEGG:ns NR:ns ## COG: L0344 COG0018 # Protein_GI_number: 15674020 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Lactococcus lactis # 1 560 1 564 564 674 59.0 0 MDFKELVVKALVPVLDGQLDEAGITALVETPKSSDLGDFAFPTFSLAKILHQAPKMIASD LVAKIDASPFEQVKAVGGYVNFYLDKISFAHEVLKAIAQSGEHFGDAKLGEGNVPIDMSS PNIAKPMSMGHLRSTVIGNALANILQKVGYSPIKINHLGDWGTQFGKLIVAYKKWGSEAD VKADPIKNLLQYYVKFHEVAETDPELEDEARAWFKRLEDGDKEAITLWRWFRTVSLAEFN RIYKILGVDFDSYNGEAFYNDKMDSVVKTLEDKHLLKTSQGAEIVDLSKYNLNPALIKKS DGATLYMTRDLAAAIFRKEHYHFVQSLYVVGNEQREHFQQLKAVLLEMGYEWANDIHHIP FGLITANGKKLSTRRGNIILLEKVLKDAVGLAQQQIDEKHPDLPNAEKVAHEVGVGAVIF HDLKNERLDNFDFNLEEVVRFEGETGPYVQYTNARAHSILRKANIAPAPEVALSDPAAWD VLRALGDYPSIVVRAAKEYEPSVIAKYALRLAKAFNKYYANVKVLVEDSELPARLAMVSA TTQVLENALHLLGVAAPEEM >gi|225002508|gb|ACIZ01000071.1| GENE 103 102785 - 103171 309 128 aa, chain + ## HITS:1 COG:no KEGG:LC705_01770 NR:ns ## KEGG: LC705_01770 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 128 1 128 128 238 100.0 6e-62 MAKTGCHYYFVARNEKTKTGYHISFPNIPNAEAVGTTYEETVYYSYRVLADFLSHLPKQE AEIRAYTLSDIPDTVASNVFYSLVSVTPDFDPHKMETHFTLPQTPPADIRQKAAKLAGLV TPNDNLAL >gi|225002508|gb|ACIZ01000071.1| GENE 104 103184 - 103366 193 60 aa, chain + ## HITS:1 COG:no KEGG:LC705_01771 NR:ns ## KEGG: LC705_01771 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 60 1 60 60 64 100.0 1e-09 MQVIRIGLLIIFIGASVLTLIGLLGWLILMLSHHHPEKMRRLTLISGGIALAALILNAFT >gi|225002508|gb|ACIZ01000071.1| GENE 105 103532 - 104473 988 313 aa, chain + ## HITS:1 COG:YKL216w KEGG:ns NR:ns ## COG: YKL216w COG0167 # Protein_GI_number: 6322633 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Saccharomyces cerevisiae # 13 312 14 314 314 400 62.0 1e-111 MTDLRTSIDGFKFDNVFMNASGVRCYTEQELDELVQSDAGTLVTKSATQAKRLGNPSPRY ARLELGSINSMGLPNEGLDYYLNYALNFQKAHPDQPIFISVAGLSMEENLAMAHTIEDSD FNGLVEFNLSCPNVPGKPQTGYDFDRTQEVLTNLFSFFTKPAGVKLPPYFDLAQFDQMAA ILNQFPLKFVNSINSLGNGLMIDPETDTVLIKPKGGFGGVGGAYAKPIALANVRAFAQRL NPQIQIIGTGGITNGRDAYDLILAGASLVQVGTLLQEEGPAVFTRLKRELAAVMQTKGYT QISDFKGQLKTLS >gi|225002508|gb|ACIZ01000071.1| GENE 106 104470 - 106287 1230 605 aa, chain + ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 352 596 1 244 249 287 57.0 3e-77 MKKKIKVWSLFTRNTKDFAHHWGAYFLLISVTNLAVGLAIIPLLTFSAQQILRLGNVPYI TLTNLGTIIVEKPGTAVLLLLIGLLLLLFVYWQFAFLILGIQNIHRQTHLNFRQLALATI KKTRRLTPTTIMILIAYFVLVFPFSSIVFKTSLLAKLTIPDFIIDFILDRWYFAILVVLL YLIGTWLAVRLLPLLPALILGDEHPAATVVRSWQATRGQAWRTLFSIILIVIPVMVLTVL LILGLYGFQTYLDQQWQQWSLLGATINLGLLQVTLLLITVFFTVMLYQLATAQAETFQLI SVQTIDAPVSKRRRTVLFRLSALALILLVVASTSAFYHAYLTGALTTQPLTISHRGVDNE NGVQNTIPALEATAKEKPDYVEMDLHETKDHQFVVMHDENLSALTGRNARPHDLTLAELT QLTARENGHAAKVASFDDYLAAAEAVHQKLLVEIKTTPYDSPEMMDHFIQRYAQRLLADH DQVHSLDYHVVTTLRKKVPTLKTFFILPYTLVFPATPASGYTLESTTLSTTVTDQAHARH QAIYAWTVNDSDDMQKMTFMDADGIITDQLATLKTTLRQMNDHPSYADQLLNYMTSFSSG DNSPF >gi|225002508|gb|ACIZ01000071.1| GENE 107 106371 - 107054 665 227 aa, chain - ## HITS:1 COG:BS_mecA KEGG:ns NR:ns ## COG: BS_mecA COG4862 # Protein_GI_number: 16078217 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Bacillus subtilis # 1 226 1 216 218 99 28.0 3e-21 MEMERINANTIRVMLGNDDLAQRGITVLDLLGNHKQIESFFYSILDEVDKDHTFATNEAV TFQVMPSQSGLELLISKNGQKNDDSDTGSDGDSADTQVPDYIRQQLQGLDANDQHDQQAV DEGGYIDAAKAPQTELVLKLKDFEDFISLAQTLRLEGGKSDLYRYKQNYYLVLTFYPNEI SSNEAHDEMAVALEFGDRSPLSSAVLSEYGKRLMETSALETARYYFK >gi|225002508|gb|ACIZ01000071.1| GENE 108 107014 - 107199 70 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTRIVFALIRSISMIAAPHFSHGTLTFVVHHMTTYYIIADFVLHGILPHVPVMIKSQALK S >gi|225002508|gb|ACIZ01000071.1| GENE 109 107336 - 107734 364 132 aa, chain - ## HITS:1 COG:BS_yjbD KEGG:ns NR:ns ## COG: BS_yjbD COG1393 # Protein_GI_number: 16078215 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Bacillus subtilis # 1 130 1 130 131 182 69.0 1e-46 MVILYTSPSCTSCRKARAWLKENKIPFQERNIFSDPLNVDEIKRLLMMTEEGTEEIISTR SKIFQELGVNIDELSTGTLIKLVAKYPGLLRRPIMMDDKRLQVGYNEDEIRRFLPRSVRT LELQQAQLLAGF >gi|225002508|gb|ACIZ01000071.1| GENE 110 107985 - 108722 790 245 aa, chain - ## HITS:1 COG:lin0930 KEGG:ns NR:ns ## COG: lin0930 COG1234 # Protein_GI_number: 16800001 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Listeria innocua # 1 231 1 230 243 201 43.0 8e-52 MKLTVLGYLGGYPDAGHATSTYLIESGDYHLLMDLGSGGLLALEKVFDPLQLDAVLLTHY HHDHTADVGVLQYFYQLRKGNKKVSPLPIYGHTKDPLNFGSLTFGSFTQGIGYTGDSTLH LGPLTLTFLETQHPVPAFAVRIKEEGTNKVLVNTSDTRYFSGLVPFAKHADLLMADTNFL ADQPAPRWHLTAPEAGTLAKEAQVKRLLLTHLPQQLDLVTLKDQAQAVAGGIPIDVAGDD LTINV >gi|225002508|gb|ACIZ01000071.1| GENE 111 108791 - 109294 503 167 aa, chain + ## HITS:1 COG:no KEGG:LC705_01777 NR:ns ## KEGG: LC705_01777 # Name: not_defined # Def: monooxygenase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 167 1 167 167 328 99.0 3e-89 MSTIQTVFGSKSFLTKLLDERHDPQLKLLKPAQSGLDYIIFDPSGQATFSAPLRYEILAS LGKTEQSGYVHFMYFNLDTDDVKVFLSKIKQLIDNHDILLGENHILLAQEAKHPDNFLVM SVWQTSNDYYEFKNTPALASVKEFIRRAASANGFHEAGYTVIDPHKK >gi|225002508|gb|ACIZ01000071.1| GENE 112 109468 - 111543 1425 691 aa, chain - ## HITS:1 COG:lin2220 KEGG:ns NR:ns ## COG: lin2220 COG0577 # Protein_GI_number: 16801285 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 65 681 63 642 646 117 22.0 5e-26 MWEQIKTNLIRHRHEDGLQILIAALISAIMYAIGAVANNRLILSDASKRLGSLDIVPSLL MIVMMVLALFSISFLLYLNSLLIGRRDQEIGLYRLLGLSGAKLGLIVFLESVMIGIVGLF VGALLGLILSPLLGMVLIRLMALHTPIGFMFSLSALMDVLTLMGVVYLLVGAINAIYVRS PLRQFIRQQDVPAPPKPQTRWRFWVGIFGFLLLVGSLLTMLRLLPIGGRLMRILSWLPGP IVLPLFLLLVIGALLLGLFLVFAYFLPGLVAWYQKRHEMQTHNASGISRHLIIKRLQGNA HSLWLTTLLCAITITMLGSSVMLFQYNQDLVLREIPTTIVASGVGVDNVTDILKQAKVKP KQAMTIPSKLVYAEIRLRNQIGEVRKQPGVYNVVALRDYQRAAKIQRELGPIRLHSQEAK LMLPTRSGFRPVGARRNPNRAIILPGSDTSLRLTQTTNLFPTGSNNYFDRGLLVTNRTFD MLNGTPDRLYMAKLPKTKAAKRALTLLQHLGNSKNLEEFVNIGIQQREGDDLTVTDRAST NMVYWRNPIGLQAAEQNFVSTLYGFLLFLILLLSGVFVVATGSILLLKQVIAVRQEIRHF QILKQLGMDPHQIRVTLYRQAAVIFAVPLICGILIALCVISVMTNYLDNPPSRYLGVMIG IYAAFDWLFYEATVHVMVRMIDLPIGRWRTE >gi|225002508|gb|ACIZ01000071.1| GENE 113 111527 - 112297 218 256 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 4 230 5 222 311 88 30 1e-16 MAILEVSNLSKIFGQRHDRVRALNDLSFQVKAGEFIGIMGPSGAGKSTLLNILATIETPS TGKVRIAGHDLEALNERQQAKFRRDHLGFVFQDFNLLDDMTVAQNVLLPLTLQHHVQPDR AERLQMVSKHLNLDALLNAFPGELSMGQRQRVAAARAVITQPSLLLADEPTGSLDSLAAT EFLRYLRQLNQQEKTTILMVTHDPFTASFASRIIFIKDGAFFAEVTRGKSREQFFDRIID MEATVSGGGHSRVGTD Prediction of potential genes in microbial genomes Time: Wed May 25 20:01:16 2011 Seq name: gi|225002507|gb|ACIZ01000072.1| Lactobacillus rhamnosus LMS2-1 contig00075, whole genome shotgun sequence Length of sequence - 18107 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 5, operones - 3 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 40/0.000 + CDS 51 - 725 614 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 2 1 Op 2 . + CDS 735 - 1838 941 ## COG0642 Signal transduction histidine kinase + Term 1860 - 1923 8.5 - Term 1848 - 1911 12.3 3 2 Tu 1 . - CDS 1989 - 2567 341 ## COG0602 Organic radical activating enzymes - Prom 2708 - 2767 6.9 - Term 2716 - 2765 8.4 4 3 Op 1 1/0.000 - CDS 2788 - 4980 1793 ## COG2217 Cation transport ATPase 5 3 Op 2 . - CDS 5000 - 5446 298 ## COG3682 Predicted transcriptional regulator - Prom 5480 - 5539 9.3 - Term 5578 - 5627 12.1 6 4 Op 1 17/0.000 - CDS 5663 - 6904 1041 ## COG0151 Phosphoribosylamine-glycine ligase 7 4 Op 2 10/0.000 - CDS 7069 - 8592 1561 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 8 4 Op 3 21/0.000 - CDS 8593 - 9180 516 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 9 4 Op 4 13/0.000 - CDS 9159 - 10169 790 ## PROTEIN SUPPORTED gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase 10 4 Op 5 10/0.000 - CDS 10166 - 11620 1201 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 11 4 Op 6 9/0.000 - CDS 11596 - 13812 1952 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 12 4 Op 7 23/0.000 - CDS 13799 - 14485 577 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 13 4 Op 8 15/0.000 - CDS 14482 - 14742 381 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 14 4 Op 9 1/0.000 - CDS 14735 - 15460 733 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 15 4 Op 10 29/0.000 - CDS 15457 - 16572 824 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 16 4 Op 11 . - CDS 16565 - 17053 372 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase - Prom 17077 - 17136 6.3 - Term 17192 - 17237 8.2 17 5 Tu 1 . - CDS 17292 - 17897 659 ## COG3859 Predicted membrane protein - Prom 18042 - 18101 3.6 Predicted protein(s) >gi|225002507|gb|ACIZ01000072.1| GENE 1 51 - 725 614 224 aa, chain + ## HITS:1 COG:CAC0224 KEGG:ns NR:ns ## COG: CAC0224 COG0745 # Protein_GI_number: 15893516 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 223 1 222 223 258 54.0 6e-69 MFKIMIVEDDQTISGLIADNLKKWQFEPVVVTDFNAVFDDFLQEKPHLVLLDINLPVFDG YYWVQKIREVSKVPVIFISSRNTNMDMVMAMNMGADDFLNKPFAMEVLIAKINALLRRTY NYADQGTDVLEHNGLMLNLKNGMAQIGEKEINLSKNEYKLLQILMRQHGQIVSRSRLLRD LWQDERFVDDNTLTVNVNRLRKKIEEAGLKDYIQTKVGQGYIVP >gi|225002507|gb|ACIZ01000072.1| GENE 2 735 - 1838 941 367 aa, chain + ## HITS:1 COG:CAC0225 KEGG:ns NR:ns ## COG: CAC0225 COG0642 # Protein_GI_number: 15893517 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 340 1 335 339 213 36.0 7e-55 MRFRDYFKDHIWAIGGYILCVGLAAIIVWLDPQHRVKLATVWYAVLLVTLVASAFFIAHF VRIRQFAARLQARQNAEDAALDWPLPGGQSGLEQVVSDTYNKILTLHRQQITALLAQHQD QKDFIDSWVHEIKVPLAAVSLLAESFEGQVPDDKLDNLNLQLDQIEFYVEQVLYYSRLDS FSKDYLLHNTQLKPLINDVVANQRNGFINKRLSFKLNGDDQTVLTDNKWLRFILAQLISN AVKYTPEGGRIQATIRDTGKETQLMIIDNGIGIPKDEQHRVFEKGFTGSNGRLSNHKSTG LGLFLAEKLAEKLGHHLTLTSVINQGTTVTIHFPYVSYYNDAGQTVEHPKKALHQTTDTS DSSNQNE >gi|225002507|gb|ACIZ01000072.1| GENE 3 1989 - 2567 341 192 aa, chain - ## HITS:1 COG:lin0306 KEGG:ns NR:ns ## COG: lin0306 COG0602 # Protein_GI_number: 16799383 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Listeria innocua # 9 188 3 182 183 255 65.0 3e-68 MTTARLPQNPQPKEWLASELSQQRIADYKPFNFVDGEGVRCSLYVSGCRFACPGCYNRVA QNFRYGQPYTQELEDRIIADLGQSYVQGLTLLGGEPFLNTQVCIRLCRRIRQEFGHDKDI WSWSGYTYEELMQDSEDKLTLLSLIDILVDGRFLLAKKDLTLQFRGSSNQRIIDVPATQA AGEIKLWKNLIR >gi|225002507|gb|ACIZ01000072.1| GENE 4 2788 - 4980 1793 730 aa, chain - ## HITS:1 COG:L70979 KEGG:ns NR:ns ## COG: L70979 COG2217 # Protein_GI_number: 15672833 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 17 729 3 694 695 609 49.0 1e-174 MKESANDKGQMQMSDHDQMHAGKMTDMSMDHEHMHQQTDMASMQMSHHDMGHMAMDHSGM DMHMDHGNMDHGGGHMMHMGNLKQKFWVSLIVMIPVLLLAQFMGMNIHLGVIELPIVFPG SDWVVLVLSSFLFFYGGWPFLTGAKAELQQRQPAMMTLIAMGITVAYGYSLYAFLMNNFI APNGMVMDFFWELATLIVIMLLGHWIEMNAVMAAGNAVEKLAALLPNQAHVVHGDHVMDM PLSEVQVGARLRVLAGEQMPADGQVVSGNSSVNESLVTGEAKAIRKAEGDQVIGGSVNGD GVIEIKVTGTGESGYLSQVMKLVQSAQANKSKAEGMADKVAGWLFYAALAVGLLAFFLWL PSGAAVAFERMVTVFIIACPHALGLAIPLVIARSTSIGATNGLLIRNRQALETAKRAQFI LMDKTGTLTEGKFTVAKTIAFTGHDQTQVLSVMAALENHSEHPLATGIKAAAKQQALNLP DAKNVQVLKGIGLEGEIDGQRYTIVNARYLKDHHLAYDEAQADQLAGAGNSLAFLIQDDQ VLGMVAEGDQLKPSSKSFVAALKQQGITPVMLTGDNHETAKKVADQLGITDFQAELKPED KVAQVEAYQKRGVVMMVGDGVNDAPSLAQADIGVAIGAGTDVAIDTADVVLVHSDPADIL NFLSLAKATNRKMVQNLWWGAGYNILAIPLAAGILAPVGFILSPAVGAAIMSLSTIVVAL NAMTLHLKRA >gi|225002507|gb|ACIZ01000072.1| GENE 5 5000 - 5446 298 148 aa, chain - ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 7 140 3 136 144 97 38.0 1e-20 METPKVEISQSEWEVMRIIWTLGPLKSSTIAAILADKMAWKIATTKTFLGRLVKKGALVT EKQGREFLYHATVGEQASMDAAVAELFSHLCQMKIGTTVNHLVAQVTLSKKDIQAVQQTL AAKLPGAPTTVHCNCLPDGCKEAIDEER >gi|225002507|gb|ACIZ01000072.1| GENE 6 5663 - 6904 1041 413 aa, chain - ## HITS:1 COG:BH0634 KEGG:ns NR:ns ## COG: BH0634 COG0151 # Protein_GI_number: 15613197 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Bacillus halodurans # 4 412 3 417 428 295 41.0 1e-79 MKKVLVIGGGARESALALKFSQSPQVDHVYVAPGNPAMELLGVEPIGIKEKEVPALIKFA QTHQIDLTFVGPEVPLAAGIVDDFQAIGLPIFGVTQKLAQLESSKTFAKAFMHRHHLPTA ASKTVHNAIEAHAEATLMGLPLVLKKDGLAAGKGVVIANDAATLDDTIEQFYAGHPDATV LLEEYLAGEEASVMALFNDQKRVILPLSQDHKRRHAADRGPNTGGMGAISPLPQFKPDQV QAAQSLVDATLAGMHQDGLNGHGVMYIGLIFTKEGPKILEYNMRFGDPETQVLLPQIEND FYQLVSDLLDGQQPTLKLNGLAYACFVAVNPDYPRANLKTVPVIVPTNWPIGTWLPAGVE RTDNGWISDAGRIFSVVAGAATLPEAVAKAKHDLESIQGVLDYRTDIGFHALK >gi|225002507|gb|ACIZ01000072.1| GENE 7 7069 - 8592 1561 507 aa, chain - ## HITS:1 COG:lin1877 KEGG:ns NR:ns ## COG: lin1877 COG0138 # Protein_GI_number: 16800943 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Listeria innocua # 1 507 1 509 509 598 64.0 1e-171 MKRALLSVSDKTGLVPFAKGLVERGFELISTGGTHRALAEAGVAVTGVEAVTGFPEMLDG RVKTLHPKIHAGILARRDDPAHMQALADHDIQPIDVVCVNLYPFAATIQRAGVTRAEAIE QIDIGGPSALRAAAKNSDSVWAVVDPADYADVLAGLDQNDADLRQRLAAKVFSVTAAYDA QIAHYLDPEPFPEQFTPTYHKRQDLRYGENSHQQAAFYVEPNPDPTSLAAAKQLHGKELS YNNIKDADAALAMLREFKQPAAVAVKHMNPCGIGLGDTLEAAWDKAYAADPMSIFGGIIA LNRRVDLATAEKMHKLFLEIIMAPAFDDDAYEILAKKKNVRLLTINTADTPEELGTETTS IYGGLLIQTRDDKAETPADMTVVTEVKPTEAQLKALAFAQTVVKHVKSNAIVVAQADQTL GIGAGQMNRIGSVELALTQAQQNDNFAGAVMASDAFFPMDDCVDYAAKHDIKAIIQPGGS IRDKDSIAKANEYGIAMVTTGVRHFRH >gi|225002507|gb|ACIZ01000072.1| GENE 8 8593 - 9180 516 195 aa, chain - ## HITS:1 COG:BS_purN KEGG:ns NR:ns ## COG: BS_purN COG0299 # Protein_GI_number: 16077719 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Bacillus subtilis # 7 190 1 186 195 177 50.0 9e-45 MAGGKQMKSLAVFASGNGTNFEALANAAQAVDSHYQIAVLVCDQMQAPVIQKAAARHIPT LVVNFKDYANKAAAETYILSQLPPVDALILAGYMRIIGPTLLNAFPKRIINLHPALLPSF PGRQGIKDAFDYGVKVTGVTVHYVDAGIDTGEIIAQDPVRVSPGMTLAQLEAAIHHQEHQ TFPATVKQLIEEGAI >gi|225002507|gb|ACIZ01000072.1| GENE 9 9159 - 10169 790 336 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase [Acinetobacter baumannii SDF] # 4 321 14 337 356 308 52 1e-83 MTDYKDAGVDIEAGDAAVKRIATLAKETANDNVLASVGGFAAAYRLPSVPQPTLISATDG VGTKLLLALQCDAHETVGIDLVAMVANDLLASGAQPLFFLDYMAVDHLDVTRAEAVVRGI AYGCQQAEMALIGGETAEMPDMYPQNHYDLAGFAVGLVSEQNRLPKDVAAGDVLIGLPSS GVHSNGYSLVRKLLAETDLGSQTLEDGSEVMQALMRPTRIYVKQVLPLMQQGLIHAAAHI TGGGITENLPRVIPAGLCAQVNPQAWHRPELFDRLQHAGHLSETTMRTTFNLGIGMILVV PEHAATTIQAALPSSKVIGHVVADPSAKIQWQVASK >gi|225002507|gb|ACIZ01000072.1| GENE 10 10166 - 11620 1201 484 aa, chain - ## HITS:1 COG:SPy0026 KEGG:ns NR:ns ## COG: SPy0026 COG0034 # Protein_GI_number: 15674270 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 1 464 1 464 484 616 62.0 1e-176 MLSEPKGLNEECGVFGIWGNPNAASITHLGLHTLQHRGQEGAGIVGLTKDGMRRHYGLGL LSEVFTNTDQLTPLMGRAALGHVRYSTAGGRVLENIQPLLFRFSDEAIALAHNGNLTNAI SLRRELESQGAIFQSTSDTEVLMHLIRRQVGQPWLVQLKKALNEVHGGFAFVLLTEHGLY AAVDPHGFRPMVVGVMPDGGYIVCSETAALDAVGADFVRDIQPGELITIDDDGLHLDHFT TNTSLAVCSMEYIYFARPDSDIHGINVHQARVRMGERLAREQPADADIVVGVPNSSLSAA IGYAKASGIPYEMGLVKSQYVARTFIQPTQALREKSVKMKLSVIKPVVAGKRIVLVDDSI VRGTTSKQIVKLLKEAGAAEVHLRIASPPLRFPCFYGIDFQTTSELFAANHSVPEMRDLL DVESLGFLSTQGLEESVGLPTTAPNGGLCVAYFTGKYPTALDDYAPALNKEVASLKVNVA EVSA >gi|225002507|gb|ACIZ01000072.1| GENE 11 11596 - 13812 1952 738 aa, chain - ## HITS:1 COG:L173921 KEGG:ns NR:ns ## COG: L173921 COG0046 # Protein_GI_number: 15673512 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Lactococcus lactis # 4 734 3 738 739 856 58.0 0 MTHVEMSPEAIAEKKPYLALGLTEDEYHRFAELIGHQPNDTEIGLASGMWSEHCAYKYSK PILRQFWTKNDRVLMGPGEGAGVIDIGEGKAVVFKAESHNHPSAVEPYEGAATGVGGIIR DIFSIGAKPVAMLDSLAFGDLNLPHTQHLVDRIVAGIGGYGNAIGIPTVGGETNFDHTYS RNPLVNAMCVGIMDKDQIQKGKAAGVGNALIYVGAKTGRDGINGASFASGDFSDEEAADR SAVQVGDPFMEKLLMDACLEITQDHQQALVGIQDMGAAGLVSSSVEMAGKANSGMEMDLD LIPQREANMTPFEIMLSESQERMLLCVRAGFEQEVLDVFAAYDLDAAVVGHVIEGHQYRL YHHGKLVCDVPVSSLTDDAPIYEQVGKMPARLAEPAPDFDPIVTDPVATWKAMMGTPTIA DKSSLYRRYDAQVQTNTVVLPGSDAAVIRIRGTHRALAMTTDSKGRYLYLDPKVGAAMSV AEAARNLAASGAEPLGITDCLNFGDPTKPEAFYELAEAAKGIIAATKAFNAPVISGNVSL YNETNGKAIYPTPMIGMVGLIEDLSTITTANFKHADDLLYLVGETHGDFNGSELQKLQTG EVAGRLFDFDLDAEKANQQFVLTAIRQHLVTAAHDLSDGGLLVALAEMGFTNQLGAQVKV DLPTSWGFSETQGRFLVTVAPEDQAAFEALNGPAELIGRVQAAPQFDVTTVSHQFSVPLE ELQTAFEEALPCYLNQKA >gi|225002507|gb|ACIZ01000072.1| GENE 12 13799 - 14485 577 228 aa, chain - ## HITS:1 COG:BH0628 KEGG:ns NR:ns ## COG: BH0628 COG0047 # Protein_GI_number: 15613191 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Bacillus halodurans # 1 224 1 224 227 278 58.0 7e-75 MKAAVISFPGSNCDLDLQWAVQTIAGAECELIKPSQTDLSRYDVVMVPGGFSYGDYLRSG AIARFSPVMTALKAFAEAGGYVLGICNGFQILTEAGLLPGALQWNRDLNFICEPVTLLVD RADTAFSNQYQVGEQLTLPIAHGEGNYYADPKTLAALEANGQVVFRYADNPNGSLHDIAG VTNEAGNVLGMMPHPERAVEALLGGTDGLGVFKSLMQQTKGVHVRDAR >gi|225002507|gb|ACIZ01000072.1| GENE 13 14482 - 14742 381 86 aa, chain - ## HITS:1 COG:asr2474 KEGG:ns NR:ns ## COG: asr2474 COG1828 # Protein_GI_number: 17229966 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Nostoc sp. PCC 7120 # 2 78 5 82 92 74 47.0 5e-14 MFKAKVYVTYKPSVLDPKAEVIKTALTRMDYHNVDDVLYGKYFELKLTGTKEAVEKQVDT ICDQLLANVNMETYRFELEPITEDEA >gi|225002507|gb|ACIZ01000072.1| GENE 14 14735 - 15460 733 241 aa, chain - ## HITS:1 COG:BS_purC KEGG:ns NR:ns ## COG: BS_purC COG0152 # Protein_GI_number: 16077713 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Bacillus subtilis # 3 233 5 235 241 223 47.0 2e-58 MKKTTLLYTGKAKQVFATDDPDVLWMTYTNQATALNGEKKAQIAHKGELNRAISTLLFKE LTAAGIPTHYIDSPDATTMIVKKATMLPLEVVVRNYASGHFVTKFNVKPMMKLDPPIHEY YYKSDELGDPFMNEAQIFALHEATPEQLKQVRALTDRVNAYLTKRFDEVGITLVDFKLEY GTLTDGTLVLADELSPDNFRLVDQKTGDSLDKDVFRQARGPLTPVYEEVLARLQEKGAAH V >gi|225002507|gb|ACIZ01000072.1| GENE 15 15457 - 16572 824 371 aa, chain - ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 18 354 19 355 374 318 46.0 1e-86 MIDVVTSPATIGIIGGGQLGRMLTQSAKTMGYRVGILEPTPNSPAGQVADFQITAPYDDQ AALTKLAKESDVLTYEFENVDLAALEAVRDLTRIPQGTAILATTRDRIKEKTFLQTHGVP VTPFVAVDRPEALTAAIEKIGLPSILKTTTGGYDGHGQQDINTMADVPAAEQLLAHGPCI LEKRQQFDREASVMITRDGRDQVRVFPIVENRHKNHILHLTLAPAPHISPVLAEKIDDLA TKIALGLDLRGVLGVELFLEGDNVVANELAPRPHNSGHYSIEACNFSQFDAHILSICGLP IPPITLKQPAVMRNLLGDDLTQAKAKWPQHPEWHMHDYGKAEIRPGRKMGHITVTDARDV MDILKQMEAAW >gi|225002507|gb|ACIZ01000072.1| GENE 16 16565 - 17053 372 162 aa, chain - ## HITS:1 COG:CC3284 KEGG:ns NR:ns ## COG: CC3284 COG0041 # Protein_GI_number: 16127514 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Caulobacter vibrioides # 4 156 8 160 163 155 60.0 4e-38 MQKVAVVMGSSSDWPTMRQVATQLEALDIPYEKHVISAHRMPDQLAAFGKHAADQGFGVI IAGAGGAAHLPGMLAANTLLPVIGVPIKTRTLNGVDSLLSIVQMPGGVPVGTMAIGDAGA VNAALYAASILALQSPELSQRLAAFRQAQTQRAEESEATLND >gi|225002507|gb|ACIZ01000072.1| GENE 17 17292 - 17897 659 201 aa, chain - ## HITS:1 COG:lin1468 KEGG:ns NR:ns ## COG: lin1468 COG3859 # Protein_GI_number: 16800536 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 3 191 2 186 186 119 37.0 5e-27 MQQHKRLVVILETAIIAAFAMALTYIPHTTGVSAIELNYGLIPIAVLAMRRGAIPAAWAG FVWGILDLILRGLSGGSVLNPVQGFLEYPIAFTLVGLMGLTFASFQKAVRGGEKVKASGY AFAGIIVGTFAKYFIHFIAGVVFWGSYAPKGMNVWIYSLIVNGGSALFSTVLAIVVVGIL LTVAPQLFIAKDGKSLSTKAA Prediction of potential genes in microbial genomes Time: Wed May 25 20:01:21 2011 Seq name: gi|225002506|gb|ACIZ01000073.1| Lactobacillus rhamnosus LMS2-1 contig00076, whole genome shotgun sequence Length of sequence - 11883 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 8, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 183 - 227 7.3 1 1 Op 1 25/0.000 - CDS 244 - 1968 1547 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 2 1 Op 2 . - CDS 1968 - 2234 386 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 2318 - 2377 3.9 3 2 Tu 1 . - CDS 2379 - 2570 260 ## LGG_01822 hypothetical protein - Prom 2653 - 2712 2.8 + Prom 2552 - 2611 3.7 4 3 Tu 1 . + CDS 2790 - 5018 1606 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 5095 - 5134 8.0 + Prom 5101 - 5160 6.2 5 4 Tu 1 . + CDS 5365 - 5658 300 ## LGG_01824 cytosolic protein + Term 5772 - 5829 18.2 - Term 5774 - 5803 -0.5 6 5 Tu 1 . - CDS 5825 - 7399 1388 ## COG4108 Peptide chain release factor RF-3 7 6 Op 1 1/1.000 - CDS 7467 - 8813 1248 ## COG1253 Hemolysins and related proteins containing CBS domains - Term 8830 - 8858 1.0 8 6 Op 2 . - CDS 8888 - 10066 1184 ## COG0628 Predicted permease - Prom 10094 - 10153 5.3 + Prom 10052 - 10111 5.7 9 7 Tu 1 . + CDS 10218 - 10577 378 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 10656 - 10693 0.4 - Term 10605 - 10654 4.1 10 8 Op 1 . - CDS 10685 - 11203 446 ## LC705_01811 hypothetical protein 11 8 Op 2 . - CDS 11227 - 11796 496 ## COG3557 Uncharacterized domain/protein associated with RNAses G and E Predicted protein(s) >gi|225002506|gb|ACIZ01000073.1| GENE 1 244 - 1968 1547 574 aa, chain - ## HITS:1 COG:SP1176 KEGG:ns NR:ns ## COG: SP1176 COG1080 # Protein_GI_number: 15901041 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Streptococcus pneumoniae TIGR4 # 1 570 1 572 577 756 68.0 0 MAEHLKGIAASDGIATAKAYLLVQPDLSFDKKTVDDPSKEIDRLKQALDQSNDELKVIRA KAAESLGEEEAQVFDAHMMILADPDFTGQIESKIKDEKVNAEQALKEISEFFIQTFEGMT DNPYMQERAADVRDVTKRIMAHLLGRTLPNPALIDEEVIIVAHDLTPSDTAQLNKKYVKA FVTDIGGRTAHSAIMARSLEIPAVVGTDDVTKKATNGETISVDGLTGEVVIDPTADEVAK FKQAAEAFAKQKAEWAQLKTAKSVTADGKHFDVAANIGTPKDLDGVLANGAEGIGLYRTE FLYMDSAELPTEDDQFEAYKKVLETMNPKPVVVRTMDIGGDKHLPYLPLPQEQNPFLGYR AIRISLDRQDIFRTQLRALLRASAFGNLRIMFPMIATIAEFKQAKQIFTEEKEKLVKDGV KVSDNIQLGIMIEIPAAAVLADQFAKYVDFFSIGTNDLIQYSMAADRGNEHVSYLYQPYN PSILRLVKHVIDSAHKEGKWAGMCGEAAGDPIMVPLLLGMGLDEYSMSATSVLKVRSLMK RLSTEDMAKMADVALNENISNDENADLVKKTTGQ >gi|225002506|gb|ACIZ01000073.1| GENE 2 1968 - 2234 386 88 aa, chain - ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 117 79.0 4e-27 MEKREFNIIAETGIHARPATLLVQAASKFNSDINLEYKGKSVNLKSIMGVMSLGVGQGAD VTISAEGADEADAIAAITDTMKKEGLAE >gi|225002506|gb|ACIZ01000073.1| GENE 3 2379 - 2570 260 63 aa, chain - ## HITS:1 COG:no KEGG:LGG_01822 NR:ns ## KEGG: LGG_01822 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 63 1 63 63 117 100.0 9e-26 MTQDYVALMDELKTGQRDKITVTPETFMAFRSAWTNYPDREEIVGMAKRDGVIEYHYRSV DSR >gi|225002506|gb|ACIZ01000073.1| GENE 4 2790 - 5018 1606 742 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 88 733 148 815 815 623 49 1e-178 MLCENCHKNPATIHLSTVVNGTRQEINLCQNCYQLLKKQAGGNMNPTNASDPFGFGSLDD IFRAMNQGMDQPQQPNAQVPPTQAGRGGNGNNGRNGNGGKGLLGQFGVDLTEQARKGQID PVIGRDKEISRVIEILNRRTKNNPVLIGEAGVGKTAVVEGLALKIANGDVPAKLQDRHVI RLDVVSLVQGTGIRGQFEQRMQQLIDELKQNKNIILFIDEIHEIVGAGNAEGGMDAGNVL KPALARGELQLVGATTSNEYRQIEKDSALARRLQPVMVEEPSVDETIKILKGLQPRYQDF HHVKYTEGAIEAAATLSNRYIQDRFLPDKAIDLLDEAGSRKNLTIATVDPETIKAKIADA EKQKQAALKQEDYEKAAFYRDQVTKLEDMAKKQSNLPDNEIPTVTEKDMEKIVEEKTNIP VGELKAQEQAQLKNLASDLEQHVIGQNEAVDKVARAIRRNRIGFNKTGRPIGSFLFVGPT GVGKTELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEKVR RNPYSLILLDEIEKAHPDVMNMFLQILNDGRLTDSQGRTVSFKDTIIIMTSNAGSTDAEA NVGFGATLSGKTHSVLDQLGNYFKPEFLNRFDDIVEFKPLSKDDLLKIVSLMINDTNNNL KSQGLTIHVTDPVKEKLVTLGYNPSMGARPLRRVIQEQIEDRVADFYLDHPNAKELEARI SNGEITVGEPAKAEASSKTAKK >gi|225002506|gb|ACIZ01000073.1| GENE 5 5365 - 5658 300 97 aa, chain + ## HITS:1 COG:no KEGG:LGG_01824 NR:ns ## KEGG: LGG_01824 # Name: not_defined # Def: cytosolic protein # Organism: L.rhamnosus # Pathway: not_defined # 1 97 1 97 97 174 100.0 8e-43 MRLINVTNSFRNLVNQQLSGTDARLVKVFSLGQTTVVYTEAPSHIELLFTNERRNIQREE IAFTLDRLLKKSIGDVTPIMGHHLAEVTVPKLERQAE >gi|225002506|gb|ACIZ01000073.1| GENE 6 5825 - 7399 1388 524 aa, chain - ## HITS:1 COG:L0369 KEGG:ns NR:ns ## COG: L0369 COG4108 # Protein_GI_number: 15672331 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Lactococcus lactis # 8 524 5 521 523 737 69.0 0 MKPQERAQEVAKRRTFAIISHPDAGKTTITEQLLLFGGVIRQAGTVKGRKSGHFAKSDWM EIEKKRGISVTSSVMQFNYQGKRINILDTPGHEDFSEDTYRTLMAVDAAVMVIDSAKGIE AQTKKLFKVVKQRGIPIFTFMNKLDRDGREPLDLIAELEDLLGIEGYAMNWPIGMGKGLK GLYDRVNNRIELYRQEGADRFLPLNDRGELDASEPLTQDSIYTQTLDDIELLNDAGNQFN LKKIMAGDQTPVFFGSALTNFGVETFLNSFVKYAPEPGPKKTAQGGEIKPTDPEFSAFVF KIQANMNPAHRDRIAFVRIVSGEFDRGMDVILHRTGKTMRLNNSTEFMADSRETVSTAVA GDIVGLYDTGNFQIGDTIYQGKTPIQFEKLPQFTPELFMRVTPKNVMKQKSFHKGMQQLV QEGAVQLYKTYHTNEYILGAVGQLQFEVFQFRMLHEYHSEVVMTPIGSRIARWIDPEQMD EKMSSSRNLLVEDVHGDPLFLFENQYAERWFADKYPDVKLTAKL >gi|225002506|gb|ACIZ01000073.1| GENE 7 7467 - 8813 1248 448 aa, chain - ## HITS:1 COG:lin2881 KEGG:ns NR:ns ## COG: lin2881 COG1253 # Protein_GI_number: 16801941 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Listeria innocua # 20 431 21 431 444 377 50.0 1e-104 MGSDPDGQIWGQLILIVLLTLINAGFAAAEIAVVSSSRARMQAQADKGDRKAAKLVAIMK DSSHFLATIQVGITFAGFFASASAATTLADKVAPIFGSWSFAHEAAVILVTLILSYFSLV FGELYPKQVALQMTERVAKISVTPISWLATLMRPFVWLLSASTKLLMKLTPMEFSHEGES VTREEMVAMIENGRNAGAIEPDEYQMFEGIISLSDTMAREVMVPRTDAFMIDAKEPDQSA IDAILNNIYSRIPVYEEDKDHVIGIVHIKNLLKEARRVGFDQVKIESVMIEPVFVPETIP VDVLLTEMQTKQQQMAILLDEYGGVVGIVTIEDLLEEIVGDIDDESDQAEKLYTKQTDHD FIVSGRMPISEFNELFKTNLDAPDVDTIAGYVLTQLGAIPSTHHSEKLELAPGVRLATGK VEGSRLVNVHIHLSETPPLEVVSKEADS >gi|225002506|gb|ACIZ01000073.1| GENE 8 8888 - 10066 1184 392 aa, chain - ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 2 360 3 361 378 270 42.0 3e-72 MFDKLRHSKLMFWSVELLVLIFVVIGLTQVSFLFAPVATFFSTLLIPIISAGFLFYLFNP IVKLLQRLHISRNVSILLIFLVVIGAIVLIVMAVLPNLIYQITQFVTNIPDFLKGVRTFI SKASHYTWYQRLNIGKYVASLQISPSKLLSQVLGGFSSGLPGVIGSLASTVISIITIPVM LFYFLKDGENFVPSIQRLLPRRYHAEVATVFTRLNATLSHYIGGQAIECLFVGTFTFIGY LIIGMPYAYLLGFIAGVVTIIPYLGPYIGIAPALIIAATEGWTKMLLVVLVVVIIQMTDG NFIYPNVIGRSLDIHPLTIIILLMVAGNLWGLLGTILAVPTYAVIKTVITYLYELYRFHQ EHKNDEDFDEDHELSLEAPTHADKPDSELKKK >gi|225002506|gb|ACIZ01000073.1| GENE 9 10218 - 10577 378 119 aa, chain + ## HITS:1 COG:SA0906 KEGG:ns NR:ns ## COG: SA0906 COG0454 # Protein_GI_number: 15926640 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 119 23 141 144 87 40.0 6e-18 MEEQHVPANLEVDADEGKATYFVVYDAGLPVATARILPEGTGYHVQRVAVEKAYRKHGLG KMVLNAIIAYAREQNVAFLKLGAQLQAIGFYKTLGFQLTDQPEFLDAGIRHREMQLQLT >gi|225002506|gb|ACIZ01000073.1| GENE 10 10685 - 11203 446 172 aa, chain - ## HITS:1 COG:no KEGG:LC705_01811 NR:ns ## KEGG: LC705_01811 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 172 1 172 172 340 100.0 1e-92 MKEIPQQPAQLLAGHAYTTEDSDQLGTFAPAWADFEHQFGFKTLDQLTKTPNRTALVVFS PYNTFIYWVGSLLPVDVKVPQNYECFKLPAATAGQVKQSADRVLMKELPLATSFNQGLHV IEQAGYPLPERLGQTDHPYYLESYRLNGGKVAEVAYRLYINPHQLTGVDEYE >gi|225002506|gb|ACIZ01000073.1| GENE 11 11227 - 11796 496 189 aa, chain - ## HITS:1 COG:SPy1608 KEGG:ns NR:ns ## COG: SPy1608 COG3557 # Protein_GI_number: 15675490 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Uncharacterized domain/protein associated with RNAses G and E # Organism: Streptococcus pyogenes M1 GAS # 12 188 1 177 177 289 76.0 2e-78 MKHGILESGLSMRIPKEGESFAIQSYKHDGSLHRTWRDTMVLKTSEDALIGCNDHTLVTE SDGRRWLTREPAIIFFHKHYWFNVIAMIREGGVSYYCNLATPFTMDQEALKYIDYDLDVK VFADGEKRLLDVDEYEAHRKLWHYPATTDRILKANVKVLVDWINHGKGPFSQAYVDLWYR RYIQLAHRI Prediction of potential genes in microbial genomes Time: Wed May 25 20:01:31 2011 Seq name: gi|225002505|gb|ACIZ01000074.1| Lactobacillus rhamnosus LMS2-1 contig00077, whole genome shotgun sequence Length of sequence - 11062 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 6, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 173 - 970 695 ## COG2137 Uncharacterized protein conserved in bacteria - Prom 1017 - 1076 4.3 + Prom 963 - 1022 7.3 2 2 Tu 1 . + CDS 1042 - 2562 1035 ## LC705_01814 transcriptional regulator - Term 2405 - 2441 2.0 3 3 Tu 1 . - CDS 2569 - 2913 405 ## LGG_01833 hypothetical protein - Prom 3075 - 3134 3.3 + Prom 2926 - 2985 5.1 4 4 Op 1 . + CDS 3027 - 4394 912 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Term 4396 - 4433 1.0 5 4 Op 2 . + CDS 4505 - 4984 530 ## COG3613 Nucleoside 2-deoxyribosyltransferase + Term 4993 - 5040 8.2 - Term 4931 - 4971 -0.8 6 5 Tu 1 . - CDS 5046 - 6800 1629 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Prom 6844 - 6903 6.8 - Term 7252 - 7302 3.1 7 6 Op 1 2/0.000 - CDS 7413 - 8585 1027 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase 8 6 Op 2 1/0.000 - CDS 8605 - 9849 974 ## COG1257 Hydroxymethylglutaryl-CoA reductase 9 6 Op 3 . - CDS 9862 - 11043 1105 ## COG0183 Acetyl-CoA acetyltransferase Predicted protein(s) >gi|225002505|gb|ACIZ01000074.1| GENE 1 173 - 970 695 265 aa, chain - ## HITS:1 COG:lin1801 KEGG:ns NR:ns ## COG: lin1801 COG2137 # Protein_GI_number: 16800869 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 3 259 2 259 269 124 31.0 3e-28 MAQITKITAQKRRGRYNIFLDGQYAFPVSETTLVTYHLAKEMTLTEDMIAQIKVSEVVAM GLEIGLNYITHQSRTRQEVRERLEKEQLPEDVIGQILTRLTELGFLDDVDYVKRYLEADL KMGDTGPRVVQYKLRQKGIATELLADQLAGIESDEWTAVAVRAGQKNLRHHQNRAYKDQL QRLRVNLMQKGFDEVTIQAAIAKLDPQPDPEAELAMLKTEAEKQWRLKQRYDERTRKQKV KTALFRKGFDLAAIDDVLSELVDES >gi|225002505|gb|ACIZ01000074.1| GENE 2 1042 - 2562 1035 506 aa, chain + ## HITS:1 COG:no KEGG:LC705_01814 NR:ns ## KEGG: LC705_01814 # Name: not_defined # Def: transcriptional regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 506 1 506 506 969 99.0 0 MFEASFFDRHSLINYQLFRAMKTLPQTTLSINALSRATGLSYSQTYTAFQTVLVQLNQMI PAETIDEANFAQFLGNVTINQYRFALLKESLPFVFFDDVFKNPHPDFHTFKEVHQTSVST LRRRITPFRDYLADNGVNLNSTTWAIEGDELHIRLAMFTFFMLAYRGAGWPFSAEEEKQA KTLLTVINQTDPDFLLMPVEPMSKEALVVLAIQLMRIKQGHPLLPNRRMQLLFSGHEDLP DLIFTSEQFPNLSDSQLKAEKQFYYFMRLYFMTVTRQPKKIDRQLLTHFGETDNLVNRFV TGLVDHLNDQLKKTDRQPIAESQVMIANLYRLSFNEYVLNGRFSQRLDFAQSLYDEADSS TLATAIQRYLKQIPKSMPESVFADFPDQFISGLYLLVSDNYPELNHDMQMIVNVLIEHDS FAKRDLLDFLNDLGFIRVVPPVEAVKPDLIITSITKPKRVIPRLGHPFDPTTPLITWMPE PTDLDYFHLYQRLKQLQRQHRSTARS >gi|225002505|gb|ACIZ01000074.1| GENE 3 2569 - 2913 405 114 aa, chain - ## HITS:1 COG:no KEGG:LGG_01833 NR:ns ## KEGG: LGG_01833 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 114 13 126 126 215 100.0 3e-55 MTATVWQNETAHIMHVGETLDLKVQRGDKITYKVGRLNTVHTIDYQSPDAKFEIQVNRSL QNAYFVVMFLMVVFLWFTRTSNLNNTLLITAVILGLAGYEALVYFVGYTAKPLH >gi|225002505|gb|ACIZ01000074.1| GENE 4 3027 - 4394 912 455 aa, chain + ## HITS:1 COG:lin1815 KEGG:ns NR:ns ## COG: lin1815 COG2265 # Protein_GI_number: 16800882 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Listeria innocua # 5 455 6 457 457 457 50.0 1e-128 MATKVKIGQRFPLTIKRLDINGAGIGYYQRKITFVTGALPGEVVVAEVTAIHDRYLEAKT HKIRSASPDRVTPTEPLFGQIGGVELNHLAYPAQLRFKRDVVAQALAKFKPLGWQHYDLK PTIGMTHPTHYRNKAQFPVREIDGHVRAGLYAPGSHRLIPLTHFLTQAPLTMKVVKTLCQ LLEDLQIPIYNEKKHAGIVKTLVVRESFSTGQVQVTFITNSAKLPKQAQLITAIAAQLPM VVSIAQNINPSSTSLIWGKESRLLAGQPYIQETLSGRTFQLSPQAFLQLNPKQTEQLYAI AKDALQLAPDDTLIDAYCGIGTVGMSLANRHQSIYGMDTIPEAIADAKDNAKNNGFNNTH YFVGKAETLFPKWLKEGIHPNAVIVDPPRSGLERPFIDALLQLNPQKFAYISCNPSTLAR DLVPLAKHYQVDWIQSIDMFPQTARCEAVVKFTRR >gi|225002505|gb|ACIZ01000074.1| GENE 5 4505 - 4984 530 159 aa, chain + ## HITS:1 COG:MA3568 KEGG:ns NR:ns ## COG: MA3568 COG3613 # Protein_GI_number: 20092374 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside 2-deoxyribosyltransferase # Organism: Methanosarcina acetivorans str.C2A # 3 107 7 110 140 64 35.0 7e-11 MKIYFANALFSHADFDYNAKLAAQIRTAIPKVDLYVPQENAAINNKEAYADSKMIAEADT QRLEAADLMIAILDGPVIDNGVATEVGVAYTRHIPILGLYTDSRRLGATNHKKLAALQEV AENQFHYLNLYTTGLIKLNGAIFTDEAALIAAIQARASA >gi|225002505|gb|ACIZ01000074.1| GENE 6 5046 - 6800 1629 584 aa, chain - ## HITS:1 COG:L0199 KEGG:ns NR:ns ## COG: L0199 COG0028 # Protein_GI_number: 15674026 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Lactococcus lactis # 4 576 3 567 567 800 69.0 0 MTEKINAADAMIKVLEDWGIHNIYGLPGGSFDSTMNALYNRRHTINYVQVRHEEVGALAA AGEAKVTGRIGATFGSAGPGAVHLLNGLYDAQYDHVPVLALVGQVPTAAMNTNYFQEMNE NPMFADVSVYNRTAMTAAQLPHVVDEAIRQAYKYQGVAVVTIPKDLGWQEIDDNYVSSAN LYQKPLLPEPDPEQVATAWSILKDAKKPILYVGNGARGARDEIIAFSEKTHIPIITTALA KGIVPDDYKANMGSAGRVASKPGVEVARGADTVLFLGSDFPFQPYFIAPNAKYIQVDIDA SKFGRRHTVDLAVLADAKKFIKALTEKADAVPETAWYRAAVANKANWAEWMTSFEDDPQT PLRVEPIFKLINEMADKDAVFQVDVGNVTINGMRYLKANDNQIFTTSGWYATMGYAVPAA IGAQAEFPDRQVWSISGDGGFAMVMQDIMTQVKYHMPIINIVLTNESLGFIEAEQDDTRQ PHSGVDLIDADYGKAAEAMGAQGFEVHNLDELKAAFAKAKDRKGPVVIDVKISDLRPIPV EQLVLDKQTQDPEAVDAFVKKYHAETLIPFRQLLEDAEKTTANV >gi|225002505|gb|ACIZ01000074.1| GENE 7 7413 - 8585 1027 390 aa, chain - ## HITS:1 COG:lin1454 KEGG:ns NR:ns ## COG: lin1454 COG3425 # Protein_GI_number: 16800522 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Listeria innocua # 1 387 1 387 388 416 52.0 1e-116 MKIGIDAIEMDTPDFYVDLVKLAKVRGDDPNKYTIGIGQDEQAVPPSSQDIVTLGANAAA KVLTPASRASLGMILVGTESGVDASKSAALFIHDLLALPEWVRAVELKEACYGGTAALMM ARDYVASHPDKSVLVIAADIARYGLATAGEVTQGAGAVAMIVKADPCLLTIEPDSVYRSA SINDFWRPVYQDTALAQGKYSTEQYLAFFKTVWERYQADHHLSAHDFAAMTFHLPYTKMG KKALDLVLPTTDDASAQRLKNRFEASTRYCRRIGNIYTGSLYLGLLSLLDHDTTLQAGDR IGLFSYGSGAVAEFFSGILQPQFKEQLHAAEHAQQLTKRQELPVPEYEAVFSDKVPYDAD DYRPDPAYYRGQFILTGVIGQERHYEKHQS >gi|225002505|gb|ACIZ01000074.1| GENE 8 8605 - 9849 974 414 aa, chain - ## HITS:1 COG:lin0821 KEGG:ns NR:ns ## COG: lin0821 COG1257 # Protein_GI_number: 16799895 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Listeria innocua # 2 414 6 425 426 273 39.0 6e-73 MKFYEQTPEARRHQLVQEGSLTSTDAALLAAARTLPDATATRLIENAIGEFSLPMGIARN LMVNGQQHQVPIVNEEPSVVAAASNGARMVAENGGVLAHVGTHEVVAEVVLTDLADLNTA RQILLAHQATIAAVANAAHPSMVQRGGGFRNLTVTILANRFLKLRLTLNPKAAMGANYAN TVAEAVADAVTTWVDGTVLASILTNAPSELVTATVKLTPATLATKTLSGDEIAHKIVQLS DLAFVDPERAVTHNKGILNGVIGAVLATGNDTRAVAASVGAFAAATGQYQPLSRWLMRDG KLEGYLQMPLPLGAVGGAIGALPLAQAARRLGGYRDLATMQQVIAALGLVQNLAALRALA GPGIQSGHMKLQANALAIAAGAQDQEVPALVAALRAGEMDLAHAKMYLATIRSK >gi|225002505|gb|ACIZ01000074.1| GENE 9 9862 - 11043 1105 393 aa, chain - ## HITS:1 COG:lin1453 KEGG:ns NR:ns ## COG: lin1453 COG0183 # Protein_GI_number: 16800521 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Listeria innocua # 1 378 1 375 389 360 53.0 3e-99 MEKVVILSAKRTPIGKLGGELAGASAVDLGVTAAKAAIKAARLDPQQLDQAIFGNVLQAG SGQNVARQIALHSGMATNSTAMTINEVCGSGLKAIRLGQAAIQLGEANAVLVGGTESMSQ VPYYAEAMRAGHKFGDTALVDGLSRDGLNDAFSQQPMGITAENVASRFQISRQAQDEFAL RSHLRAAAAAAEGRFKSQIAPVTISGRHGDVTIDTDSAIRPDTSLAQLAKLPPVFEVGGT VTAGNASGINDGAAALILMAKSKAEQLGLHYLATITDYTEVGIDPDIMGYAPKLAIDQLM QKTGQTLTAIDQVELNEAFASQSVAVMRDLGLTDEQVNINGGALALGHPLGASGARIMVS LLYNLAERRQQTGIAALCVGGGIGMAMQVTLHD Prediction of potential genes in microbial genomes Time: Wed May 25 20:01:40 2011 Seq name: gi|225002504|gb|ACIZ01000075.1| Lactobacillus rhamnosus LMS2-1 contig00078, whole genome shotgun sequence Length of sequence - 2106 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 190 - 249 6.0 1 1 Tu 1 . + CDS 328 - 627 248 ## LC705_01823 hypothetical protein - Term 502 - 540 -0.0 2 2 Op 1 . - CDS 624 - 1454 598 ## LC705_01824 sugar phosphate isomerase/epimerase 3 2 Op 2 . - CDS 1488 - 2051 362 ## COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes Predicted protein(s) >gi|225002504|gb|ACIZ01000075.1| GENE 1 328 - 627 248 99 aa, chain + ## HITS:1 COG:no KEGG:LC705_01823 NR:ns ## KEGG: LC705_01823 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 99 1 99 99 175 100.0 5e-43 MRVIDLLALLADQSKNAPVLLNTTPAPSRFDDFILKTQNDQPQLIFKPKPDRKSPLRVWE LQLLLNQPDLQSRFLYLADAGGTRALFGFIHRPVGLLLN >gi|225002504|gb|ACIZ01000075.1| GENE 2 624 - 1454 598 276 aa, chain - ## HITS:1 COG:no KEGG:LC705_01824 NR:ns ## KEGG: LC705_01824 # Name: pepQ # Def: sugar phosphate isomerase/epimerase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 263 1 263 276 542 100.0 1e-153 MLLGLKASTDERQIRDRLQYHPDVFEFHLTEADFTASGWQHFLKMVAWVQSQVPTVVFHH PMRFRGQRNELAMNPTKYPARYDFLMTSSVKLMTLAKKVNATALIHGGYRVDTPGDYAGW RDVAKAQDVALARMIAFAQEAPGHVVFENSMSPIFRYGDPAFEARLLRWRLPLAYDTSHT FITLRGDNERLIASLRNLKPLVRHYHLVDSMGQTHDSLPLGEGRIDWYRVLPQLNPNASR IYEIGLKNQFDCQEMIASHHYLEKVAAKLAAAKHPA >gi|225002504|gb|ACIZ01000075.1| GENE 3 1488 - 2051 362 187 aa, chain - ## HITS:1 COG:jhp0345 KEGG:ns NR:ns ## COG: jhp0345 COG1787 # Protein_GI_number: 15611413 # Func_class: V Defense mechanisms # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes # Organism: Helicobacter pylori J99 # 62 182 64 185 189 86 39.0 3e-17 MRILLKKAYHLLWGLFVLALIYSFWARTILPRQLRPYGDPASFTIISLFVVINALLLYHH HFRFRDLKMESVDIMEGEKFEEFCAYLLKRNGFKRIQLTQASGDQGIDIIAQKKGQSFGF QCKRYTGFVGNKAVQEVWAGHHYYQLDQAAVITNSEFSDSAIALADDLGVMLIDRKKLKR LMRRLPS Prediction of potential genes in microbial genomes Time: Wed May 25 20:01:50 2011 Seq name: gi|225002503|gb|ACIZ01000076.1| Lactobacillus rhamnosus LMS2-1 contig00079, whole genome shotgun sequence Length of sequence - 11357 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 6, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 173 - 232 3.9 1 1 Tu 1 . + CDS 256 - 1089 373 ## COG2017 Galactose mutarotase and related enzymes - Term 979 - 1027 4.1 2 2 Op 1 . - CDS 1186 - 2382 995 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 3 2 Op 2 . - CDS 2460 - 3065 636 ## LC705_01828 membrane protein - Prom 3097 - 3156 3.1 + TRNA 3568 - 3656 61.0 # Leu AAG 0 0 + Prom 3581 - 3640 80.4 4 3 Tu 1 . + CDS 3766 - 4230 423 ## LGG_01849 GNAT family acetyltransferase - Term 4148 - 4184 -0.3 5 4 Tu 1 . - CDS 4227 - 4679 159 ## COG3091 Uncharacterized protein conserved in bacteria - Prom 4699 - 4758 2.0 - Term 4852 - 4898 -0.7 6 5 Op 1 13/0.000 - CDS 4927 - 5679 195 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 7 5 Op 2 9/0.000 - CDS 5672 - 6571 878 ## COG4120 ABC-type uncharacterized transport system, permease component 8 5 Op 3 . - CDS 6568 - 7563 1055 ## COG2984 ABC-type uncharacterized transport system, periplasmic component - Prom 7679 - 7738 7.6 - Term 7770 - 7813 6.2 9 6 Op 1 . - CDS 7948 - 8385 427 ## LC705_01835 hypothetical protein 10 6 Op 2 . - CDS 8446 - 11109 2368 ## COG0474 Cation transport ATPase - Prom 11264 - 11323 5.3 Predicted protein(s) >gi|225002503|gb|ACIZ01000076.1| GENE 1 256 - 1089 373 277 aa, chain + ## HITS:1 COG:BH2755 KEGG:ns NR:ns ## COG: BH2755 COG2017 # Protein_GI_number: 15615318 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Bacillus halodurans # 1 135 1 158 348 61 24.0 2e-09 MKLSAKIFAKVGSERITQYTLVNDQQMTLRFLTFGARVQQVRLPTTTGLDPNLLLGFVTL EDYLHQPGLFGAMTGPLAPDDPKTIPGAWQNWNWAVKTSQTADLAITFSLNLPENADGQP GERSLMVTHRLNNDNVWTIDMAVKTTAEIRLHPRLILPWLLTADPAQTMLHAQLTIDHQQ STIKQQPEISPAHRFSLATGDWQLHYATDAPATRIDSFANIGPDNNFNGILGQPHVAIGF SPENNLTGNAWTLAAGATWQHHAEYQLSRIKASTPDR >gi|225002503|gb|ACIZ01000076.1| GENE 2 1186 - 2382 995 398 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 22 394 2 373 378 238 38.0 2e-62 MVAIWIVKMMYFKSGGGSLTDEEQQVTDLLQAMVRIPSVAAKEGQVADLIEAFLAPELSA GLIKRERISYAPGRDNLVLTIGDSNAQRWLGVDGHMDVVDAGDPNKWQFPPFSAQIEDGK LYGRGATDMKSGLAAAVVAFKQIAHEELDHGVQLMATVGEEIDNYGARQLAAAGYGDRLT GLLVAEPGNSNVDAAERGIIDYTLTAQGKAAHSSRPDLGANAIHGLFAFANAALTATAPL QAKDDPILGHATHNIDIIHGGNQINSLPESAYLRGNIRTTMIADNDAFIAALKQAAKTSV PKGVHLSLSIDSVLSAAAAAPDNALIQKVQQARQRIGLQRGAVAYRTGITDAALFFHDGL DLAIYGPGNDTSHETDEYVDLQDVFDSIKVYKDVFKNY >gi|225002503|gb|ACIZ01000076.1| GENE 3 2460 - 3065 636 201 aa, chain - ## HITS:1 COG:no KEGG:LC705_01828 NR:ns ## KEGG: LC705_01828 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 201 1 201 201 280 100.0 2e-74 MTRRGKAYNIAIIGILGALIILQAYIPMVGYVQIFPAWPAISTIHLTVIIGGIVLGYGGG ASLGLLWGLTSLIRAYTSAADPVTLLLFRNPIIALVPRVMVGLVAAFVFHQLFKRHQSTL AQTIKMVIAGVAGALTNTLLVIGFTWLLFASKAAQIVPGANATNLGWLLITALAINAVAE AVLGGIVTPILGQALLRFRRK >gi|225002503|gb|ACIZ01000076.1| GENE 4 3766 - 4230 423 154 aa, chain + ## HITS:1 COG:no KEGG:LGG_01849 NR:ns ## KEGG: LGG_01849 # Name: not_defined # Def: GNAT family acetyltransferase # Organism: L.rhamnosus # Pathway: not_defined # 1 154 1 154 154 281 100.0 5e-75 MLREAQFVDLPAIVHLYQQLTQEMAALAPDTYRPLTTDNRQYFADYLQNDLARLFVTESQ GTLTGFALVVLARTGDSPEFVPQHFAQLIDLFVTPDHRHHGLAKTLMTAVEAFAASHQAS FIQLNVLSGNQTAREVYARAGFQPVNLILQKPLN >gi|225002503|gb|ACIZ01000076.1| GENE 5 4227 - 4679 159 150 aa, chain - ## HITS:1 COG:L86677 KEGG:ns NR:ns ## COG: L86677 COG3091 # Protein_GI_number: 15672268 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 149 2 147 147 159 51.0 2e-39 MTNQELQARVEAISMSAFHQPFNHQAVFNARLRTTGGRFYPATMNLDFNPKIFALYPSDV TDGIIKHELVHYHLFAQHRGYQHRDHDFKQLLAAVGGSRFAPSLPMNGRHYVYQCTRCGR QFVRRRRINVNRYACGVCRGKLRLQATRNN >gi|225002503|gb|ACIZ01000076.1| GENE 6 4927 - 5679 195 250 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 22 229 294 499 563 79 26 9e-15 MAELKLDHVTVNVPVATQVKTLLQDVTLTVKTGEFVTVLGHNGAGKSTLFNAITGDLPVS GGTVTLAGQTLNGRRPEQRARHIARVFQDPKMGTAPRMTVAENLLLASHRGQRLGLRSRG LNAQKAQLKALAAKTGNGLAEALDKPTEQLSGGQRQALSLLMATMRKPDLLLLDEHTAAL DPHTSQAIMALTNAIVSEQQLTCLMITHQVEDALRYGNRLIVLDAGQIVADFDQKRKAAL KRADVLAFFN >gi|225002503|gb|ACIZ01000076.1| GENE 7 5672 - 6571 878 299 aa, chain - ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 5 279 3 274 288 244 53.0 2e-64 MSLGVSAIGQGLLYGLIGLGLFLTFRVLDFPDMTVEGTFPFGAAVAVSAITHGISPIIAT LLATVAGMLAGLVTGLLTTKGRIPVLLAGILVMTGLFSINLRIMGRANLSLLHQANLFQG SFLKDLPPYFNSVVVGLIVVVIVVGLLMLFLNTQLGQGFIAAGDNPNMARSLGINPDHQM VLGLMVGNGLVGLAGGLLAQNNGYADVNMGIGIIVIGLAAIIIGEVVFGELTLSQRLVAV ILGSIIYRFVLLVVLALGFNADDLKLISAVVLAIAIMVPQIDHQLRLRRVLQKGVQIHG >gi|225002503|gb|ACIZ01000076.1| GENE 8 6568 - 7563 1055 331 aa, chain - ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 35 323 53 339 344 251 47.0 1e-66 MKRMLGFMIIIFGFLGIAYFQSGTTAQQTQTKPTVGILQLTTHPALDAIHKGIIAGLKDK GYVAGKNIKIDFQNAENDQSNLKSMSERFTEEHAAATVGIATPAAQALANVNQKTPIILG AITDPVAAKLVKNVKKPGGNITGVSDQAPIAAQLKLIRQIMPDAKTLGVIATSSDDSAQT QAKMVAKLGPKEGFTVKRYAISSTNDLNQVATQMVSQVDAVFVPTDNTVASAMQTLVAAA NARKVPIFPTVDTMVKQGGVATIGLNQFDLGVETGHMLADVLKGKAKPATTPIHFEKTGR LILNEKQAQQLGITLPSSLVKQADAKGTVIK >gi|225002503|gb|ACIZ01000076.1| GENE 9 7948 - 8385 427 145 aa, chain - ## HITS:1 COG:no KEGG:LC705_01835 NR:ns ## KEGG: LC705_01835 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 145 1 145 145 245 100.0 3e-64 MNKQQMKLAHYGSTINDVVEQIQANQDKMAPLFEPLRKAIDADQLAEYDRETYEDTQVVF REGTAQYQKLLTRLQQVAVPARLAGPHRTLVHDFAAFTAACEAMTASLKPDLEVDVPAFN ASEKAQDETIQKFTKQIQKISLILQ >gi|225002503|gb|ACIZ01000076.1| GENE 10 8446 - 11109 2368 887 aa, chain - ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 7 880 11 885 893 1043 62.0 0 MAKKPPYALSSQEVLQEEKTQLTGLSKETAQTRLNENGPNELAQAEKKSMLARFLDQFKD FMIIVLLAAALIAGFLLSEWADAGIILAVVLLNAVFGVFQESKAEEAIDALKEMSTPNAH VRRGDQVLTIPSSQLVLGDIVLLEAGDVVPADLRLVESANLKIEESALTGESVPVDKTSE PLTGADVGIGDRTNMAFMNSNITYGRGVGVVVATGMQTEVGRIAGMINSAEETTTPLQEN LKSLGKTLTVMILVIAVIVFAVGIWRNAASLPEMFLTAVSLAVAAIPEGLPAIVTIILAL GTQKMAKRHALVRKLPAVETLGSTDIIASDKTGTLTQNKMTVEKVYYDGQLNAASAGIHG GNPLMTIMNFANDTQVQDDGQLLGDPTETALVAYGKTQSFDLTKELAAEPRIAEVPFDSE RKLMTTLHRRPDGKILVATKGAPDELLKRVTNLATGDNVAPLSDSERDAILKANKDMATQ ALRVLGMAYKVIDAVPDTVNSETVEQHLTFAGLVGMIDPERPEAQAAVAEAKSAGIRPMM ITGDHRDTAEAIAVRLGIIDQGDDAAVITGAELDQQSDEEFAKNVGKYSVYARVAPEHKV RIVNAWQKKGKVVAMTGDGVNDAPALKAADIGIGMGITGTEVSKGASDMVLADDNFATIV VAVEEGRKVFSNIQKAIQYLLSANLGEVLTLFMMTMLGWDILAPVHILWINLVTDTFPAI ALGVEPTEPGIMKQKPRGRKSNFFSGGVGPAVIWQGILEGLLTLGVYWIAITYPVHSGEA AMHADALTMAYATLGLIQLFHAFNVKSIHQSLFTVGAFRNKAFNWAILASFLLLAVTILV PGFNGLFHVTTLDWHQWITVLGAGVTMIVIVEIVKVFERARRRRLAK Prediction of potential genes in microbial genomes Time: Wed May 25 20:02:01 2011 Seq name: gi|225002502|gb|ACIZ01000077.1| Lactobacillus rhamnosus LMS2-1 contig00080, whole genome shotgun sequence Length of sequence - 5107 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 1 - 54 5.6 1 1 Tu 1 . - CDS 182 - 1342 931 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 1365 - 1424 2.5 - Term 1386 - 1444 4.0 2 2 Op 1 . - CDS 1454 - 2281 818 ## COG0171 NAD synthase 3 2 Op 2 . - CDS 2281 - 3477 846 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 4 2 Op 3 . - CDS 3491 - 4954 1269 ## COG1488 Nicotinic acid phosphoribosyltransferase - Prom 5013 - 5072 3.7 Predicted protein(s) >gi|225002502|gb|ACIZ01000077.1| GENE 1 182 - 1342 931 386 aa, chain - ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 12 371 23 375 391 137 28.0 4e-32 MLHRRKMIWVGVVLGLAALLLGGTVLGWQQDHSASQRQARVKPSKYREKVTRKDTAKTQA ALFDEKLDRSVKTKAGQSFSEALTNDKFIGSALVIQHGKVIFNGGVGYADQASQRLNGPT TLFQIGSIQKAITAVAVMQLVEAGKLRLDDPVSKYLSGIQTGDQVTLRMMIDMRSGFALK KYQPAVMGDMDIIRWAIANMTYLPQQNYAYQPVNYLLLAGVIEKVAGRSYEQQVKNDIIE RLKLKHTGFLPAMLTDSNRSLTYTGPVTNPYQTFIGEPELWYNRELGTGNMYTTTGDLYR LLRGIDSGKVITLSALKTLRNRDDGVYTAGIYNHQDFYSTHGVVAGQMASTAISHDGQNA IILLSNYNSHALNLHDLAVHLFQTLG >gi|225002502|gb|ACIZ01000077.1| GENE 2 1454 - 2281 818 275 aa, chain - ## HITS:1 COG:SP1420 KEGG:ns NR:ns ## COG: SP1420 COG0171 # Protein_GI_number: 15901273 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Streptococcus pneumoniae TIGR4 # 4 275 3 274 274 381 70.0 1e-106 MRPLQAEIIKALGVKPTIDPEKEIRRSVDFLKAYLKKNTFLKTYVLGISGGQDSTLAGTL TEKAMQEMRAETGDDTYQFVAVRLPYGEQADEADAMAAIEFMQADVVKRVNIKPSVDAMV SAVEANGAAISDFNKGNIKARMRMIAQYAIAGNMAGAVIGTDHAAEAVTGFYTKFGDGGA DLTPLYRLDKRQGAALLKTLGAPAHLYQKAPTADLEDNRPALPDEVALGVKYHDIDDYLE GKQVSDQAAETIERWYQKTAHKRHLPITVFDTFWK >gi|225002502|gb|ACIZ01000077.1| GENE 3 2281 - 3477 846 398 aa, chain - ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 95 389 90 388 391 128 31.0 2e-29 MRQTKKRRWGRWLLLGLVIGVIAGIAIYGSYDYLYVRPQIAAKEERARRQYETELNRHRA IEQRLQNQAKADTGTTNKLMQPVDSPDAKPLLAKLQAAHFSGTVLMMRKGKVILNTGLGY ADVDSGRLNGPETLYQIGSIQKGLTAVLLMKLVEQGKVRLSDPIGHYFTGIRTGKKVTLR MMLDMRSGLTLPRAQPAKLSDAGIVRWSIANLNYETPRYDYQPVNFVLLAGVIEKVTGRL YADLIQQEIFKRLALTHSGFMPELYREQNQAFGYNGPKADPYSKRYIEPALSYNRELGTG NIYASAGDLYQIMAGINQGKIISRSAVMQLRDLSQGQYTAGVYNFGSYTLTHGVVAAHSA ATVMDSSGQNAVVLMANAGQITRDLAQSLFLDMIKGVK >gi|225002502|gb|ACIZ01000077.1| GENE 4 3491 - 4954 1269 487 aa, chain - ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 7 483 13 488 495 667 67.0 0 MTTQLGEGLTLHTDFYELNMMNTFFERGISERHAVFEVFFRELPFGSGFAVFAGLEHVID YLNHLKFSETDLAYLQSQTDYSDAFIDYLRHFEFTCTVRSALEGDLVFNNEPIWQIEGPL AQAQLVETAVLNMINYQTLVATKAARIRSVAGADPLMEFGTRRAQETAAALWGTRAAYIG GFNATSNVLAGKEFGIPISGTHAHSLVQAYGNDYEAFKAYAESNRDVVFLVDTYDTLRSG VPAAIKVANEFKDRINFLGVRIDSGDMAFISKRVRQQLDDAGYTSAKIYASNDLDENTIQ NLKMQGAKIDIWGVGTRLITAYDQPALGAVFKLVSIEDSTGQMHDTIKLSNNAEKVSTPG KKQVWRITRRDDGKSEGDYVALADEVIDPERSLYMFHPNFPYINKTVKNFEAKPLLQLIY DQGKQVYQTPPLADVQAYATRSTNALWDEYRRILNPQDYPVDLSQRVWDNKMDLIKKVKS AVADREE Prediction of potential genes in microbial genomes Time: Wed May 25 20:02:09 2011 Seq name: gi|225002501|gb|ACIZ01000078.1| Lactobacillus rhamnosus LMS2-1 contig00081, whole genome shotgun sequence Length of sequence - 33304 bp Number of predicted genes - 24, with homology - 24 Number of transcription units - 17, operones - 5 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 229 - 274 8.2 1 1 Op 1 2/0.000 - CDS 293 - 994 777 ## COG2188 Transcriptional regulators 2 1 Op 2 . - CDS 1020 - 2165 1171 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase - Prom 2201 - 2260 6.1 - Term 2203 - 2249 4.6 3 2 Op 1 . - CDS 2263 - 3060 791 ## COG0345 Pyrroline-5-carboxylate reductase 4 2 Op 2 . - CDS 3063 - 5048 1320 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases - Prom 5071 - 5130 3.6 - Term 5162 - 5214 17.1 5 3 Tu 1 . - CDS 5304 - 12077 7463 ## LC705_01847 extracellular matrix binding protein - Prom 12156 - 12215 4.1 + Prom 12115 - 12174 6.3 6 4 Tu 1 . + CDS 12353 - 13843 904 ## LC705_01848 transcriptional antiterminator + Term 13878 - 13933 11.0 - TRNA 13959 - 14039 66.5 # Tyr GTA 0 0 - Term 14066 - 14123 8.2 7 5 Op 1 . - CDS 14141 - 14974 826 ## LC705_01849 phosphohydrolase 8 5 Op 2 . - CDS 15022 - 16488 1386 ## COG3104 Dipeptide/tripeptide permease - Prom 16565 - 16624 5.9 - Term 16698 - 16738 4.1 9 6 Tu 1 . - CDS 16777 - 19095 2024 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component - Prom 19144 - 19203 3.0 - Term 19227 - 19276 4.2 10 7 Tu 1 . - CDS 19302 - 19616 317 ## LGG_01870 hypothetical protein - Prom 19650 - 19709 2.9 11 8 Tu 1 . - CDS 19726 - 20148 383 ## LC705_01853 hypothetical protein - Prom 20188 - 20247 4.7 + Prom 20442 - 20501 7.6 12 9 Tu 1 . + CDS 20725 - 22155 1189 ## COG2211 Na+/melibiose symporter and related transporters 13 10 Tu 1 . + CDS 22373 - 23509 927 ## COG3669 Alpha-L-fucosidase - Term 23554 - 23610 1.0 14 11 Tu 1 . - CDS 23677 - 23994 282 ## LGG_01875 glutaredoxin-like protein - Prom 24056 - 24115 2.7 15 12 Tu 1 . - CDS 24232 - 25884 1399 ## COG1866 Phosphoenolpyruvate carboxykinase (ATP) - Prom 25968 - 26027 5.2 16 13 Op 1 . - CDS 26090 - 26260 119 ## LC705_01858 hypothetical protein 17 13 Op 2 2/0.000 - CDS 26315 - 27619 841 ## COG0370 Fe2+ transport system protein B 18 13 Op 3 22/0.000 - CDS 27633 - 28424 792 ## COG0370 Fe2+ transport system protein B 19 13 Op 4 . - CDS 28411 - 28902 579 ## COG1918 Fe2+ transport system protein A 20 14 Tu 1 . - CDS 29112 - 29870 490 ## COG1835 Predicted acyltransferases - Prom 30035 - 30094 5.7 + Prom 29914 - 29973 5.2 21 15 Tu 1 . + CDS 30120 - 30623 321 ## LGG_01881 hypothetical protein + Term 30689 - 30738 5.0 + TRNA 30825 - 30896 67.2 # Glu TTC 0 0 + TRNA 30901 - 30976 80.1 # Thr CGT 0 0 + Prom 31246 - 31305 3.8 22 16 Op 1 . + CDS 31339 - 31977 472 ## COG2910 Putative NADH-flavin reductase 23 16 Op 2 . + CDS 32014 - 32502 157 ## LC705_01865 internalin-I + Term 32517 - 32580 17.0 - Term 32510 - 32561 10.1 24 17 Tu 1 . - CDS 32569 - 33093 523 ## LGG_01884 hypothetical protein - Prom 33125 - 33184 3.8 Predicted protein(s) >gi|225002501|gb|ACIZ01000078.1| GENE 1 293 - 994 777 233 aa, chain - ## HITS:1 COG:SP1446 KEGG:ns NR:ns ## COG: SP1446 COG2188 # Protein_GI_number: 15901296 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 3 232 5 233 235 263 56.0 3e-70 MDVPVYIQIHNAIRADIEAGKWRVGDRIPSERDLAVTFKVSRMTLRQAIQTLVDEGILER RVGSGTYVANQKVQEKMSGVTSFTDLMQAQGKVPSSKTVSYHVAQPTSSEVEKLKLAPAE QVLRMERIRYADKVPISFETAAVPYDLVKGFTKKEMTASFYHTLEKKGGYVLGGAQQTVS AMLASERISEYLAIKRGDAILRLRQVSFLKDGTPFEYVRTQYVGERFEFYLER >gi|225002501|gb|ACIZ01000078.1| GENE 2 1020 - 2165 1171 381 aa, chain - ## HITS:1 COG:lin0955 KEGG:ns NR:ns ## COG: lin0955 COG1820 # Protein_GI_number: 16800024 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Listeria innocua # 1 377 1 376 377 455 57.0 1e-128 MTVTVLKHATIYTGLERIEDGYIRFDDKILAVGDMFDYQAQAGEQVVDVQGKTLIPGFID VHAHGGYGFDAMDGDADQIDQMATKMMTHEGVTTLFATTMTQSTENIDKAMRGVKQAAER NRIIQGVHLEGPFISKVFKGAQPEEYIKNPNIDLVKQWQELSGGLVKLITYAPEDEGSRE FEDYLLAHNIVPSVGHSNATREQMLASKATHVTHLYNAQRGLRHREPGVTGHAMLEDNMY CELICDGFHIVPDMLRLAFDQKGPERIELVTDSMRSKGMPEGKSELGGQTVYVKDKQARL ADGTLAGSVLMYKDAFKNAMSFMDASLFDAVEMSSVNQAREFNLTSKGTLEVGKDADINM LDRNHDLIATYSYGEKHDTEA >gi|225002501|gb|ACIZ01000078.1| GENE 3 2263 - 3060 791 265 aa, chain - ## HITS:1 COG:L135991 KEGG:ns NR:ns ## COG: L135991 COG0345 # Protein_GI_number: 15673866 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Lactococcus lactis # 2 264 3 261 262 169 37.0 6e-42 MTIGFIGAGNMARAMISGLLAKKAVAPTDIVLHGGQPLHYEPYAAKIGAKALASNQAVAE TADIVFLAVSPKLGEPILQAIGSTLKKRHVPVVSMLTGVSVATLEEALGSHDQPVLRIMP NVNVAINAGMIAYAANDAVAGQLDGLLDLLNVLGKTVSLPEEQFSTFVALAGSSPAFIYL FIDSLARAGVKYGLEKDQATAIAAQAVMGSAKNVLASDQSPFDLIDQVSSPGGTTVAGLL AMEEAGLMTAVVKGVDATIAKDRHG >gi|225002501|gb|ACIZ01000078.1| GENE 4 3063 - 5048 1320 661 aa, chain - ## HITS:1 COG:BS_yuxL KEGG:ns NR:ns ## COG: BS_yuxL COG1506 # Protein_GI_number: 16080276 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Bacillus subtilis # 3 651 5 656 657 381 35.0 1e-105 MAIAATDLFKLVSLSYPIATNRGFFVQENRISEEDNTYYQRIYLVNRRGQKTTYGFDQKH DRHPQVSPDQQWLAFLSQAADKTTQVFLQRIDGGGAQQFSNEKEGVTNFGWQPDSKALLL QTTVGAKPQISESDAKKPQPVTVTRAPYKLNGVGLLKENVTYELRIQQRRQKTSHLIMKR QHDFDLGAISPDGQKIAFAAERLPDDPNDFSQATYLFDLTSQKITMVNEHLPQAALSPEA FSADGQQLLLVGSDNHLPNVSQDHLWHYDLTNHELQDVADDVDFDIPGYVNSDFQQDLSG KVADFVTADYYLARGFDHGKMSLYAGGPDERLTPLIDGRRHVTDFALTPDHRGVIFTEST MTIPSRLVYFDLASEEEQVLYDPNRQVTRHLGLVNPQTFNFQRDGFEIEGWYFPPQQASS SHPAILYVHGGPAVGYGYTFFHEMQYLAAKGYGVICPNPRGGLGYGEAFTAAVIKHYGQG DYEDCLAAVDEALKLDTTIDPQRLFVTGGSYGGFMTNWIVTHTHRFKAAVTQRSISNWLS MYGTSDIGYYFTPWELEGKWTGDLSDVQGLWDFSPLAHIDHARTPTLVMHSENDERCPIG QGEEFYIGLKLHGVETKFMRFPKSNHDLSRSGLPNLRVARLQAIVDWFDAHQAQPQMAKG E >gi|225002501|gb|ACIZ01000078.1| GENE 5 5304 - 12077 7463 2257 aa, chain - ## HITS:1 COG:no KEGG:LC705_01847 NR:ns ## KEGG: LC705_01847 # Name: not_defined # Def: extracellular matrix binding protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 2257 1 2257 2257 2051 100.0 0 MKKGRLILLLATGLISMGLWDSSGVVLAANKPQAGDIHLGGADGSSYRKLINSITFQYSN DAVVYDEGTDTFKIPIRFGSLESDGLDRYLEFGYSFNDALEGKIKRVVISPDGLVPAVIT SLNANREFARRWDGSDGKSVSHQLGGRADAVIYMQAHKIMPEDWIAVRMETNRVEGKHPV HPAFRSTRILEYNDFGPALNAKLLEAMKKKAIDDTAKDPKPVQEEVKEKVDPITVDEDFD KLIQEIVLNAHKEQAKRDIDAEAAKVSAEIEQDPTLTATEKAKQKDGVAAEATKAKAAID QAQTETGVQQARDAGIAAIDAQHQPGTGLNVRREEAKQAIDAEAAKVTAEIEQDSTLATS EKAAQKQGVADEAAKAKTAIDQAQTIEAIDKAKDDGIKAIDAQHKQGADFDTRKAQAKDA IDDEAAKVKDAIDQDPTLTSKDKTAQKQDVGDEATKAKTAIDQAKTIDGVIQAKDDGIKA IDAQHQAGTDLATRKDSAKQAIDDEAAKITDAINQDDTLTSAEKETQKQAVADEAAKAKA AIDQAQNADTILQAQADGIKAIDAQHQTGTELDTQKTKAKQAIDKEATKVLTAIDQDPTL TSAEKKAQKQGVADETAKAKTAIDAARNADEIAKAQEDGIKAIDGQHQLGVDLAKRKADA QAAIDAEATKVGEAIDQDPTLASQEKAAQKQTVTAAASKAKDAIAKAQDADGVIQAEKAG IQAIDDAHQSGTLLDTRKADAKKAIDAEVTKINEVIDQDVTLTSAEKATQKQTVADEAAK AKTAIDAAKNADTIDQAKASGIQAIDAVHQSGTLLDTRKEDAKKAIDAEAAKVIAAIGQD VTLTQAEKLTQQQAVADAATQAKAAIDAAKNADAVDQAKADGIKAIDAQHQAGLALNERK EAAKKLIAETADKVQAAIDQDVTLTATQKAAQKQAITAEVTKANQAIDAAGNADAVDQAK NAGVKAIYDQHQSGQALADRKRDAKQAIDAEAAKETAAIDQDATLTANEKASQKQAVADE ATKAKAAIDAAKQADTVDQAKTGGVKAIDAQHHAGQAVADRKAAAKQAIDAEAAKVTGNI DQDETLTAAEKAAQKQAVATEADNAKQAIDKGQNADAVDKAKTDGIKAIDAQHQSGQAIK ARQNDAKQAIDAEAAKVTKAIDQDPTLTAAEKKAQKQAVTDAATKAKAAIDAALVADAID QALADGIKTIDAQHQSGIALDKQKAVAKQTIDAEAAKVSEAIDQDVTLTADQKATQKQTV ADEATKAKAAIDQASDADGVIQATTAGVKAIDAQHQSATPFDTQKQQAKQAIDAEAAKVS KAIDQDVTLTATQKADQKQAVIAEADKAKKAIDAAGNADGIKQAESDGIKAIDAQHQSGQ ALADRKGDAKAAIDTEAAKETAAINHDATLTANEKASQKQAVADEATKAKEAIDAAKQAD AVDQAKNDGIKVIDAQHHSGQSLDNRKADAKQAIDAEAAKVTAAIDQDNTLTKAQKAAQK QGVATEADKAKQAIDAAGDADAVDQAKTAGIQAIDAQHKAGKTIDSRHDDAKQAIDDEAA KVIKAIDQDPTLTAAQKEAQKQAVATEADKAKKAIDAAGDADAVDQAKTAGIKAIDEQHK SGQTVDARKDDTKKAIDAEAGKVTDAIDHDATLTAAQKEAQKQAVADEADKAKKAIDAAG NADAIDQAKSAGIKAIDEQHKSGQSIETRKDDAKKAIDGEVAKITDAIDHDPTLTDAEKA AQKQAVIAEADKAKKAIDAAGDADAVDQAQKAGIKAIDQQHKSGQALATRKDAAKKAIDE EAAKVSEAIDHDVTLTDSEKGTQKQAVADEAKKAKQAIDTADNADGVDQAVTKGIQIIDA QHQSGQALTDRKAAAKKAIDAEAAKVGQAIEQDPTLTATEKKRQKQAVADEATKAKAAID TAANASAVDQAKNAGIKAIDAQHVSGKAFDLSKDEAKKAIDAEATKVQGEIDQDPTLTAT AKKQQKEAVTTEAGKAKQAIDQAKNIEEVTTAKDAGIKAIDAQHQSGTAVATRKDDAKKA IDEEAAKVIKAIDQDPTLTDAEKTAQKQAVATEADKAKKAIDAAKGADAVDKAKAAGIKA IDAQHRSGQTIAAQKDAAKKAIDDEAAKVIKAIDQDPTLTDAEKAAQKQAVAAEADKAKK AIDAAGNADAVNQAKAAGIKAINDQHRAGKGQKVTKATPLPTTKAPEKPAAPKTKVITST EGNLPKTGEQQSLWMVILGALLSLFSGLLFAKKKASH >gi|225002501|gb|ACIZ01000078.1| GENE 6 12353 - 13843 904 496 aa, chain + ## HITS:1 COG:no KEGG:LC705_01848 NR:ns ## KEGG: LC705_01848 # Name: not_defined # Def: transcriptional antiterminator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 496 1 496 496 947 100.0 0 MEELLESSLLKHYDIISFLLDKDWMTINRVAEETRIPARTIRQNIGTINQYIAPAKIESS QRYGIRLTYDSAHNPLYIYSAIYRQSTRFLILEQIFLQHFLSIAQFSEALYISESTLKRH IQVLNQILPHYGFHIDTQSLDIIGDEKKIHFFYYTYFLERYWFIDDFLPQDELKLIDAII SEFFAHYPTLTTPRYQSFSFINKLRATIFVCLKRNSRGHTFENATPAIENATFSPELRQS IARCYKIDCSSLVFSHLFYLFFNPRNAWSYADLLTKTHQDAEIRAIHRALTHFLDMIVAT EHLSLPNREQVLLRLYNAIEYTWGPPKILYSPSEAFFASMNQFSKTFIRHARQTLVTALR NEKVNVRIDDAFITKLLFTLVTSWETLPLQLEQKAPKVRTGLFFNTSFEHSHFLLNELNY HLRSNLKLELVPASTLAELKTVARQFDLIITNLPLLNLPNCQVVAIQPHPTPEDFDNILA AYNRIINAKSLESSVS >gi|225002501|gb|ACIZ01000078.1| GENE 7 14141 - 14974 826 277 aa, chain - ## HITS:1 COG:no KEGG:LC705_01849 NR:ns ## KEGG: LC705_01849 # Name: not_defined # Def: phosphohydrolase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 277 1 277 277 553 100.0 1e-156 MVKVAISVDNHFDVNHVDGFEMLKHQAAYLVEHGYQVYVNAGDTYNDFTKTLAYYQALQR EVGDQVIIRFLAGNHDMVKGATYAEIQSDVDPLYLHEKVLSVPGTNAVIVGNNGWYDYSL AQLGKSKTSAEYAQWKRAFWIDSAIDSPISDLERMQRVLDTTKAALVANRGKRIIYATHF VPILGAMVYAVDRLSWQMATALMGSAKLGDLLTNRASAVVFGHEHFRDAPKLLGKTTYYH QPLGYGLKRLFEWQSTDWLTEWRDTLVTLEVPAALTD >gi|225002501|gb|ACIZ01000078.1| GENE 8 15022 - 16488 1386 488 aa, chain - ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 1 488 1 492 492 511 56.0 1e-144 MDNSKNRTFMGHPRGLLTLSMTEFWERFSYYGMRAILIYYMYYAVEKGGLGFDQPTALSI MSIYGSLVYLSATIGGFISDRLLGSRRTVFWGGVLIMLGHIVLSLPIGAVGLFGSIVLIV LGTGLLKPNVSEMVGSLYPEEDLRRDSGFSIFVMGINFGSLIAPIFVPWMADKFNFHAGF SLAAIGMFIGLIFYVIDGRKYINPADNTAPDPLKPEDIRPLVMRVVGALVVVAVILAVMA SLGALTIANVISLITIVAIGLPVWYFILMIRSKKVTKTERSRVIAYIPLFLAAMIFWAIE EQGSVVLALFAAQQTKLDFGFFKILPGNFQTLNPLFILLYGPLFAWLWMKLGKRQPTSPK KFYLGLIFAGASYLWMVIPVLLFGSSAKVSPLWLVMSWAILEIGEMLISPVGLSVTTKLA PKAYSSQMMSMWFLADASAQAVNAQIVRFYTPSHEVAYFAVVGLVSVIFAIVLVFFTPRI EKLMQGVN >gi|225002501|gb|ACIZ01000078.1| GENE 9 16777 - 19095 2024 772 aa, chain - ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 287 3 289 290 224 41.0 6e-58 MLELKHIKKYYQTGDYTTKALDDVSVQFREQEFVAILGPSGSGKTTLLNVIGGLDRYDSG DLLLHGRSTKNFKESDWDAYRNNSVGFIFQSYNLIMHLSILENVELGLTLSGVSASERRK KAEAALVKVGLKEHMGKQPNQLSGGQMQRVAIARAIVSEPSILLADEPTGALDTETSQEI MQLIADLSRERLVVMVTHNPQLAHDYAQRIIEFKDGKILSDSKPYDVEEQTGHFDLRRTK MSYLTALKLSFTNIMTKKGRTFLTAFASSIGIIGIAVVLALSSGFQKQIDNTQSETLAQF PITISSTAVNLTAGAEDNTKTSTFKTTKTVEAKQSASDKAQHTNKLNQKYIDYVNGISKR LTNNIGYTYGTGMNLLRNVNGTVKPVQFSTAKPTSNQAQRSFSSASSSVYPVDREGKTSY LKKNYEVVAGSYPKSDNDVILIVDRDNSTNINALKNLGFSVKNGQKIKFGDIVGTKLKAI ANDHYYQNVGGSVYVPTKNYADAYNQNGNRELTVTGVLRTRSKTSDGLLSQGFAYSDRLT KDLVAMNKNSAVVKAQRNSDVNIFTNQSIDDATKDQLITGLGGSETPTQITIYPTSFKDK DKILSYLDKFNHGKKKADQVVYTDLAGTISSMTGGIMSAITIVLVAFAGISLVTSMIMIA ILTYTSVLERTKEIGVLKALGARRKDITRVFDAETIILGVSSGILGIIIAWLLTFPINAI LYGMTELPNVAQLNPVHAVILILISTILTVLGGHIPARMAANKDAAIALRAD >gi|225002501|gb|ACIZ01000078.1| GENE 10 19302 - 19616 317 104 aa, chain - ## HITS:1 COG:no KEGG:LGG_01870 NR:ns ## KEGG: LGG_01870 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 104 21 124 124 202 100.0 3e-51 MVDELNQDGNFGGLPIHRISLTRQTKELIYVDLDFELTTGLTQPLFEQMAKYILVSVAGL AHAPQPIYLMAMANPFSKLNISYYIYPDHSLDLIYWQPLMKVQS >gi|225002501|gb|ACIZ01000078.1| GENE 11 19726 - 20148 383 140 aa, chain - ## HITS:1 COG:no KEGG:LC705_01853 NR:ns ## KEGG: LC705_01853 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 140 1 140 140 276 100.0 2e-73 MYAVSNEPSYVEVINQNLERLLVFETVFKEYVHTCKNIEKGNCYASESLDRLRLYFTKNV IKFCNFVDSVNAESAPCNYAAFHKVLVSGLCGIRSGVLNMLQAIDTDQVDHERFAAGLAE QQAARAQIDSAFSKILDPIF >gi|225002501|gb|ACIZ01000078.1| GENE 12 20725 - 22155 1189 476 aa, chain + ## HITS:1 COG:STM4299 KEGG:ns NR:ns ## COG: STM4299 COG2211 # Protein_GI_number: 16767549 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 34 448 23 432 476 99 26.0 2e-20 MKGYPKNYPLDSRTFFGVNAMGLISTTAYYLYTAVLMMFITDYSGIYTNVPGKAAAVATT LLFVGRLWDAINDLWTGYLIDISPRTRWGKFKPYVLIGTFFTGILGMMLFHIPQNLSDFG KEVYLYITYFLFMFSATIIVTVPLTSTMSADQEIRAKLISWPRITSNVVGVVFAFFMAIA SFLGTKKSPNIPLTVDLIIIPFLIISLIGGFMVKEGPVAEGTKPPKLRDVGRMVKINKPF RVNLYFTFVGGFVWALLTATSLYYIKYAFGVANLGIQSMYFGLLTLVTLIGGTLISQKAM KYMSALRGVQICYLGMVPFLLIMFAINEFQVIHNPWLFYLLIGIVMTLAGAQFVPANLII METMDYNRLKLNSGMEATINAVNMFLQKLQSGLATIGVGLALLLVGYNAQILEKATRIPD SLLKSLGVVLFGLPAVFSLVAYLLTKQYPLQGEARTQMYAELAAKTAAASQKNKRV >gi|225002501|gb|ACIZ01000078.1| GENE 13 22373 - 23509 927 378 aa, chain + ## HITS:1 COG:TM0306 KEGG:ns NR:ns ## COG: TM0306 COG3669 # Protein_GI_number: 15643075 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Thermotoga maritima # 3 377 9 346 449 207 37.0 3e-53 MVKPSPVNIHRDDPPAWFKQADFGIMIHWGLYSVPAFAPTNVPDYDTFIKSKPLKFFFAN QPYAEWYANSILFPDSPAARYHREHYGNAPYSDFAKTFKQSAQQVDVDAWADAFANAGAK YVVIVTKHHDGFVLYDTDVANPYQPDYHLDFDFVGQLAQAVRARGMHFGTYYSSLLDWTF PHVPIADYGSLMLGNDRSKIYNQYARAHWHELIDRYHSDILWSDIGYPDDPGLPDLFRYY YDQVPDGLVNDRWRQFPNWLRNKPGRAVFNIAAKYVMNQERKHPGDVGELKYYDYRTLEY NSDWKENKRYFEMTRGMDKSFGYNQFSQSKDYITTAAVKKLIATLHPKRGRLLLNVGPDR YGNIPPYQMKILQQLSDR >gi|225002501|gb|ACIZ01000078.1| GENE 14 23677 - 23994 282 105 aa, chain - ## HITS:1 COG:no KEGG:LGG_01875 NR:ns ## KEGG: LGG_01875 # Name: not_defined # Def: glutaredoxin-like protein # Organism: L.rhamnosus # Pathway: not_defined # 1 105 1 105 105 210 100.0 1e-53 MAIHFVVYEKPQCESCRLTKRWLLAHHQHFRTTNQRGESNLVDTSAEDPLKRAWSAQKVV KFRADGYDRFPVVRVRDDETGDVLATWSGFHPEALASWAAINQLS >gi|225002501|gb|ACIZ01000078.1| GENE 15 24232 - 25884 1399 550 aa, chain - ## HITS:1 COG:APE0033 KEGG:ns NR:ns ## COG: APE0033 COG1866 # Protein_GI_number: 14600399 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (ATP) # Organism: Aeropyrum pernix # 189 462 140 416 493 80 27.0 6e-15 MTSKQKFPVSDVTATSGYFSALKATVETAFYGNNVQAVTTIAAAYALAKKAPGVIVTDLP VQHASELGLPEDARVLVANDGQVVGRTAAARRIIGQPGVDTAELTKIAREAVFAGTRKSF LSGHVVVGLSADFAVEAHLMVPETYANNLYTYLLNFQIKTPEATQQYEQSRPLPEDDLYL YADPDWHHPDYPDGLAIFDPLHNAAIILGLRYFGELKKGTLTLAWATAHRNGFVACHGGM KQYQRQDGTFTMAAFGLSGSGKSTITLTSHGDRYPVKVLHDDAFVIDRQTGATTALEPAY FDKTQDYPMSDPNTRYFLTVQNVGVTLDDHGKKTLVTQDIRNGNGRTVKSRYVTPNRVDH LVESVDAIFWIMKDDALPPVVKVEDPSLAAAFGATLATKRSTAENVRADVDREQLVIEPF ANPFRSYPLGEDYQDFYDLFQQRGTACYILNTGFFQGQKVKPSDTLDAIAAIVDGTAAFK PFGPLPAMRYLSLPNFAVDFSNSAYRALLRQRLDDRLTFLADKATVADGYDRLPLAATQA LEKVAAALVE >gi|225002501|gb|ACIZ01000078.1| GENE 16 26090 - 26260 119 56 aa, chain - ## HITS:1 COG:no KEGG:LC705_01858 NR:ns ## KEGG: LC705_01858 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 56 1 56 56 112 100.0 4e-24 MATWIIGSLVVLTIAVVLYRTFFRKNRAGGCSQCEDIGCPLIDHAKVMQANKQRKA >gi|225002501|gb|ACIZ01000078.1| GENE 17 26315 - 27619 841 434 aa, chain - ## HITS:1 COG:L190009 KEGG:ns NR:ns ## COG: L190009 COG0370 # Protein_GI_number: 15672169 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Lactococcus lactis # 1 401 275 677 709 501 58.0 1e-141 MSDRIDRIVTNRYLALPIFVVVMWAVYYLSIQTIGTIGSDYLNDTVFGSWLPSVVGGTLK SWAVAPWLSGLIVDGLIGGIGSVLGFLPQIIMLFLCLGILEDCGYMARIAFVMDRLFRRF NLSGKSFIPILIATGCGVPGIMATRTIESEKDRRMSIMLTTFMPCSAKLTVIALVSGTFF PNNSWVAPSAYFMGIVAVVCSGIFLKKTALFAGPPAPFVMELPAYHLPRLTNLYRSVMSR ARAFVHKAGTIIFLSCVLLWFLSNFNFTLQMVPENHSMLRAIGGILAPLFAPLGFGDWHA TVATLAGLIAKENCVGTLHISFGASGSGSFAQTLRATYPAMAGYAFLMFNLLCAPCFAAI GTMYKEFGDARWTWRAVGYQTGVAYLLTMLVYQSSLIFTGQAGGLSIVLVGLAAGLIIYG LWLKRPVPAMAASY >gi|225002501|gb|ACIZ01000078.1| GENE 18 27633 - 28424 792 263 aa, chain - ## HITS:1 COG:L190009 KEGG:ns NR:ns ## COG: L190009 COG0370 # Protein_GI_number: 15672169 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Lactococcus lactis # 5 259 2 264 709 225 43.0 8e-59 MDMHETLALVGNPNSGKTTLFNALTGSKQHIGNWPGVTVERKSGRLKANHALVLEDLPGT YSLSPYSSEEIVTRDFLLDNQPDLVINVVDATNLERNLYLTLQVMETGRPLIVALNMMDV LEKNGHRSINLKKLSYALQVPVIGTNATKTAALQELVQTIQAPLPKPYTFPEYDPRLESA LTMLAEVIGDRVPQERVRWYAIKIFENDPQVMEKLAFSPAEQKQVTEILHTAEHIFEDAS DSIIVNARYDFIARVIAMCGRSR >gi|225002501|gb|ACIZ01000078.1| GENE 19 28411 - 28902 579 163 aa, chain - ## HITS:1 COG:L192240 KEGG:ns NR:ns ## COG: L192240 COG1918 # Protein_GI_number: 15672170 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Lactococcus lactis # 28 154 26 148 152 84 36.0 1e-16 MQALLDINQPGAYLLMSVGGSAALRRHLAEMGLVIGKKLTVVQPANKATGLVIFFQGQRL AISDEIAGLLVVQPFAMDDHQPAVALGELALNQVGLIRTIKGDPPLRHRLMDMGLTKGTL VKIHQIAPLGDPIELAVRGYKLSIRKQDAAHVFVTEVGADGHA >gi|225002501|gb|ACIZ01000078.1| GENE 20 29112 - 29870 490 252 aa, chain - ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 10 247 367 600 605 106 30.0 3e-23 MHRQRTHLTKGWLWPVVLLAVVLIAGGIWFGLNQQAQARAQQAASSSRVKARSVARSRSA AKASQAEASSRKAEDPVYKDFADEGLSYHQVQVAKKMPITAVGDSVMLGSAYLYKEIFPK VDLDATVSRQIYQAPELFKSLAASGRLADTVIIGLGTNGTFTDEAFQSIMTSIGSKRQVY WINVRSDAEWTNEVNRDLVKMAKRYSNLHIVDWYAASAEHDNWLTADKTHPTTEGQLHYV ATVAKAVLAKSK >gi|225002501|gb|ACIZ01000078.1| GENE 21 30120 - 30623 321 167 aa, chain + ## HITS:1 COG:no KEGG:LGG_01881 NR:ns ## KEGG: LGG_01881 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 167 1 167 167 317 100.0 1e-85 MTKTLYLIGGPMGAGKTAVSEQLVKRLPQAVMLDGDWCWAMDPFVVNDATKAMVMDNIHH LLNAFIQAPDLINIVFCWVMDEQEIIDDVLGGLMLKNVQVVNVSLMPSAEKLKRNITADI HAGIRTADAIPKAIARLPKYTTVNSTKLDTTALVPAQTAAMISKLSH >gi|225002501|gb|ACIZ01000078.1| GENE 22 31339 - 31977 472 212 aa, chain + ## HITS:1 COG:lin0787 KEGG:ns NR:ns ## COG: lin0787 COG2910 # Protein_GI_number: 16799861 # Func_class: R General function prediction only # Function: Putative NADH-flavin reductase # Organism: Listeria innocua # 1 208 1 209 213 135 41.0 7e-32 MKIAIIGATGNAGSAIFKEALKRGHQVTGYVRHPDKGVGILPPDAELIQQDAFTLTHNEL QNYDVVVDAFGTTVDQAYLHIDLADHLIHELRETTSPRIVFILGAGSLETDGGRLYDLLK KDPHAPSFINTPKNQLREYQLLQWTDNVNWLGISPSMIFQHGPATEYVRGDNTLLKDSQG KSVLNSGTLAVALLDELEQPTIKQARFTARNA >gi|225002501|gb|ACIZ01000078.1| GENE 23 32014 - 32502 157 162 aa, chain + ## HITS:1 COG:no KEGG:LC705_01865 NR:ns ## KEGG: LC705_01865 # Name: not_defined # Def: internalin-I # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 162 1 162 162 304 100.0 8e-82 MIQVRLTVHYVDENGKALGPDNHLMNSRDHHFRLTAPPLIGYDFQKAILPNGQHVKDPTV AGTMSGETPELTFVYTTADSLIHQPKPATLVIKYLDSHQKPLRDVQVLHTKTGHQFKLTA PNFSGFHYHHALLPGGMVMSDKTVTGRLIRSHNELIFTYQPT >gi|225002501|gb|ACIZ01000078.1| GENE 24 32569 - 33093 523 174 aa, chain - ## HITS:1 COG:no KEGG:LGG_01884 NR:ns ## KEGG: LGG_01884 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 174 1 174 174 277 100.0 1e-73 MDKRLQIRQQKKHRHRGLKIFSIVAGLIVLMAVCGIFFFPQINNTIRNVTGNDTPADSAV KARIVSGITAQKTGNPATDAVLQRAADTIKETKMSTIMKAAQDQDQAATLLQKATGVNQD QAKLAATVLFKEQSVTPIRQAIASGDYYQAYQDAKSLQQQGDTSSLQSILTGQQ Prediction of potential genes in microbial genomes Time: Wed May 25 20:03:02 2011 Seq name: gi|225002500|gb|ACIZ01000079.1| Lactobacillus rhamnosus LMS2-1 contig00083, whole genome shotgun sequence Length of sequence - 312 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 1 - 73 82.9 # Asn GTT 0 0 - 5S_RRNA 80 - 197 100.0 # EU184020 [D:4881..4998] # 5S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Predicted protein(s) Prediction of potential genes in microbial genomes Time: Wed May 25 20:03:02 2011 Seq name: gi|225002499|gb|ACIZ01000080.1| Lactobacillus rhamnosus LMS2-1 contig00084, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:03:02 2011 Seq name: gi|225002498|gb|ACIZ01000081.1| Lactobacillus rhamnosus LMS2-1 contig00086, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:03:03 2011 Seq name: gi|225002497|gb|ACIZ01000082.1| Lactobacillus rhamnosus LMS2-1 contig00087, whole genome shotgun sequence Length of sequence - 1705 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 683 681 ## COG5523 Predicted integral membrane protein 2 1 Op 2 . - CDS 754 - 1092 291 ## LGG_02854 hypothetical protein - Prom 1204 - 1263 5.9 + Prom 1063 - 1122 4.1 3 2 Tu 1 . + CDS 1244 - 1567 380 ## LGG_02855 hypothetical protein Predicted protein(s) >gi|225002497|gb|ACIZ01000082.1| GENE 1 2 - 683 681 227 aa, chain - ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 113 207 79 166 345 71 44.0 1e-12 MDRTALKDQAKAELNPNFSYYLLISLPALLLTGLAAIVPFPTIREAHHGEWQILVKSRLD TVTGSHMNEYLNMWQSILIFVSLLGLLLMIGVGFAMIDGLRGRSDHHFGWRQMFKIFERG EYFLGSLLIGLLQWVWVFLWTLLLIVPGIVKALAYSQAQWLYRDAIDRGQPIGYTEAITQ SRQLMDGYKWEFFVLILSFLGWWLLELITFGLAAIWVMPYRTMTFAN >gi|225002497|gb|ACIZ01000082.1| GENE 2 754 - 1092 291 112 aa, chain - ## HITS:1 COG:no KEGG:LGG_02854 NR:ns ## KEGG: LGG_02854 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 112 1 112 112 213 100.0 1e-54 MELNISAQAAARLAPLLRADRVLILDLNDGIGPYSRSYHDPTQAKFSLLILPRRNVPDVF DAHLDSPVGPVLIKSYTCGLFDTKTELTVNGDEFTLLRGKPQLNPKVPLKFV >gi|225002497|gb|ACIZ01000082.1| GENE 3 1244 - 1567 380 107 aa, chain + ## HITS:1 COG:no KEGG:LGG_02855 NR:ns ## KEGG: LGG_02855 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 107 1 107 107 186 100.0 2e-46 MNIYSALKFVQIDHAPVNHLQVVVTDQSGKPDAGMTDLLIDCLNKIDIFVDLSTTDRVSD VIDDLNLLTPLPYDVLEEYQKILEQPITGINIAMKKQLIEFVYAPLV Prediction of potential genes in microbial genomes Time: Wed May 25 20:03:08 2011 Seq name: gi|225002496|gb|ACIZ01000083.1| Lactobacillus rhamnosus LMS2-1 contig00088, whole genome shotgun sequence Length of sequence - 239 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 228 152 ## Smal_3697 interferon-induced transmembrane protein Predicted protein(s) >gi|225002496|gb|ACIZ01000083.1| GENE 1 3 - 228 152 75 aa, chain - ## HITS:1 COG:no KEGG:Smal_3697 NR:ns ## KEGG: Smal_3697 # Name: not_defined # Def: interferon-induced transmembrane protein # Organism: S.maltophilia_R551-3 # Pathway: not_defined # 1 68 1 68 92 106 100.0 2e-22 MNTATPQVPNNLVWAILTTLFCCLPAGIVSIVYAAQVNGKLAAGDIAGAQDSAAKAKKWA IWSAIAWAVLVVLYV Prediction of potential genes in microbial genomes Time: Wed May 25 20:03:10 2011 Seq name: gi|225002495|gb|ACIZ01000084.1| Lactobacillus rhamnosus LMS2-1 contig00089, whole genome shotgun sequence Length of sequence - 235 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:03:11 2011 Seq name: gi|225002494|gb|ACIZ01000085.1| Lactobacillus rhamnosus LMS2-1 contig00090, whole genome shotgun sequence Length of sequence - 232 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 204 126 ## Smal_1243 putative secreted peptidyl prolyl cis-trans isomerase, cyclophilin type Predicted protein(s) >gi|225002494|gb|ACIZ01000085.1| GENE 1 1 - 204 126 67 aa, chain + ## HITS:1 COG:no KEGG:Smal_1243 NR:ns ## KEGG: Smal_1243 # Name: not_defined # Def: putative secreted peptidyl prolyl cis-trans isomerase, cyclophilin type # Organism: S.maltophilia_R551-3 # Pathway: not_defined # 1 67 234 300 300 125 97.0 4e-28 DPTLRTPIVSIRRASDVPVAERTPIQVLRTDSKTFADTVEARRNRVDDFYKRPAGHIDLC NIPVPVR Prediction of potential genes in microbial genomes Time: Wed May 25 20:03:13 2011 Seq name: gi|225002493|gb|ACIZ01000086.1| Lactobacillus rhamnosus LMS2-1 contig00091, whole genome shotgun sequence Length of sequence - 237 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 24 - 194 77 ## COG0640 Predicted transcriptional regulators Predicted protein(s) >gi|225002493|gb|ACIZ01000086.1| GENE 1 24 - 194 77 56 aa, chain - ## HITS:1 COG:YPO3346 KEGG:ns NR:ns ## COG: YPO3346 COG0640 # Protein_GI_number: 16123496 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Yersinia pestis # 1 49 53 101 113 79 75.0 1e-15 MLRESGLLLDRREGKWIHYRLSPHMPAWAAAIIEQAYQCRPEQMTELAQRVAKGCP Prediction of potential genes in microbial genomes Time: Wed May 25 20:03:13 2011 Seq name: gi|225002492|gb|ACIZ01000087.1| Lactobacillus rhamnosus LMS2-1 contig00092, whole genome shotgun sequence Length of sequence - 233 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 34 - 231 74 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Predicted protein(s) >gi|225002492|gb|ACIZ01000087.1| GENE 1 34 - 231 74 65 aa, chain - ## HITS:1 COG:all1723 KEGG:ns NR:ns ## COG: all1723 COG0235 # Protein_GI_number: 17229215 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Nostoc sp. PCC 7120 # 1 65 190 253 253 70 44.0 5e-13 AFWFIALERCCRQQLMVEATGIKPALVSAERSRYSREHVGSEYIGWLHFQPIYDHLALSQ PDMFD Prediction of potential genes in microbial genomes Time: Wed May 25 20:03:14 2011 Seq name: gi|225002491|gb|ACIZ01000088.1| Lactobacillus rhamnosus LMS2-1 contig00093, whole genome shotgun sequence Length of sequence - 234 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:05:22 2011 Seq name: gi|225002490|gb|ACIZ01000089.1| Lactobacillus rhamnosus LMS2-1 contig00097, whole genome shotgun sequence Length of sequence - 50152 bp Number of predicted genes - 49, with homology - 49 Number of transcription units - 12, operones - 6 average op.length - 7.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 16 - 98 64.0 # Leu TAG 0 0 + TRNA 167 - 238 79.2 # Gly GCC 0 0 + TRNA 250 - 335 67.3 # Leu TAA 0 0 + TRNA 346 - 422 69.1 # Arg ACG 0 0 + TRNA 470 - 541 79.2 # Gly GCC 0 0 + TRNA 546 - 619 80.8 # Pro CGG 0 0 + Prom 761 - 820 5.6 1 1 Op 1 3/0.000 + CDS 858 - 1325 285 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 2 1 Op 2 . + CDS 1359 - 3872 2479 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 3 1 Op 3 . + CDS 3935 - 4096 81 ## LC705_02502 hypothetical protein + Prom 4226 - 4285 6.0 4 2 Op 1 58/0.000 + CDS 4314 - 7916 3215 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit 5 2 Op 2 . + CDS 7929 - 11591 3184 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 11633 - 11686 16.3 - Term 11624 - 11671 11.2 6 3 Tu 1 . - CDS 11769 - 12272 222 ## LC705_02499 hypothetical protein + Prom 12500 - 12559 9.4 7 4 Op 1 . + CDS 12653 - 13192 398 ## LC705_02498 hypothetical protein 8 4 Op 2 . + CDS 13162 - 23586 8849 ## COG4932 Predicted outer membrane protein + Term 23628 - 23677 9.1 + Prom 23893 - 23952 5.4 9 5 Op 1 56/0.000 + CDS 23974 - 24390 706 ## PROTEIN SUPPORTED gi|199598825|ref|ZP_03212236.1| 30S ribosomal protein S12 + Prom 24413 - 24472 1.6 10 5 Op 2 51/0.000 + CDS 24569 - 25039 810 ## PROTEIN SUPPORTED gi|116495953|ref|YP_807687.1| 30S ribosomal protein S7 + Term 25047 - 25096 8.1 + Prom 25043 - 25102 2.7 11 5 Op 3 . + CDS 25129 - 27231 2177 ## COG0480 Translation elongation factors (GTPases) + Term 27258 - 27296 7.6 + Prom 27573 - 27632 5.3 12 6 Tu 1 . + CDS 27663 - 28694 655 ## LC705_02492 transcriptional regulator + Term 28733 - 28768 -0.6 + Prom 28829 - 28888 3.7 13 7 Tu 1 . + CDS 28924 - 29487 559 ## COG0450 Peroxiredoxin + Term 29543 - 29583 4.1 - Term 29519 - 29581 24.9 14 8 Tu 1 . - CDS 29659 - 30096 481 ## COG3223 Predicted membrane protein + Prom 30202 - 30261 6.7 15 9 Op 1 40/0.000 + CDS 30427 - 30735 516 ## PROTEIN SUPPORTED gi|199598831|ref|ZP_03212242.1| 30S ribosomal protein S10 16 9 Op 2 58/0.000 + CDS 30761 - 31393 1074 ## PROTEIN SUPPORTED gi|229552708|ref|ZP_04441433.1| ribosomal protein L3 17 9 Op 3 61/0.000 + CDS 31416 - 32039 1045 ## PROTEIN SUPPORTED gi|229552709|ref|ZP_04441434.1| ribosomal protein L4 18 9 Op 4 61/0.000 + CDS 32039 - 32341 496 ## PROTEIN SUPPORTED gi|199598834|ref|ZP_03212245.1| Ribosomal protein L23 19 9 Op 5 60/0.000 + CDS 32370 - 33206 1447 ## PROTEIN SUPPORTED gi|199598835|ref|ZP_03212246.1| 50S ribosomal protein L2 20 9 Op 6 59/0.000 + CDS 33246 - 33527 490 ## PROTEIN SUPPORTED gi|116495943|ref|YP_807677.1| ribosomal protein S19 21 9 Op 7 61/0.000 + CDS 33545 - 33898 569 ## PROTEIN SUPPORTED gi|116495942|ref|YP_807676.1| 50S ribosomal protein L22 22 9 Op 8 50/0.000 + CDS 33912 - 34574 1133 ## PROTEIN SUPPORTED gi|199598838|ref|ZP_03212249.1| Ribosomal protein S3 23 9 Op 9 50/0.000 + CDS 34578 - 35012 743 ## PROTEIN SUPPORTED gi|199598839|ref|ZP_03212250.1| 50S ribosomal protein L16 24 9 Op 10 50/0.000 + CDS 34990 - 35196 318 ## PROTEIN SUPPORTED gi|191639420|ref|YP_001988586.1| 50S ribosomal protein L29 25 9 Op 11 50/0.000 + CDS 35217 - 35480 430 ## PROTEIN SUPPORTED gi|199598841|ref|ZP_03212252.1| Ribosomal protein S17 26 9 Op 12 57/0.000 + CDS 35512 - 35880 592 ## PROTEIN SUPPORTED gi|116495937|ref|YP_807671.1| 50S ribosomal protein L14 27 9 Op 13 48/0.000 + CDS 35901 - 36221 526 ## PROTEIN SUPPORTED gi|239630340|ref|ZP_04673371.1| LSU ribosomal protein L24P 28 9 Op 14 50/0.000 + CDS 36246 - 36788 905 ## PROTEIN SUPPORTED gi|199598844|ref|ZP_03212255.1| 50S ribosomal protein L5 29 9 Op 15 50/0.000 + CDS 36803 - 36988 328 ## PROTEIN SUPPORTED gi|199598845|ref|ZP_03212256.1| Ribosomal protein S14 30 9 Op 16 55/0.000 + CDS 37014 - 37412 659 ## PROTEIN SUPPORTED gi|116495933|ref|YP_807667.1| ribosomal protein S8 31 9 Op 17 46/0.000 + CDS 37443 - 37973 902 ## PROTEIN SUPPORTED gi|199598847|ref|ZP_03212258.1| 50S ribosomal protein L6 32 9 Op 18 56/0.000 + CDS 38002 - 38370 606 ## PROTEIN SUPPORTED gi|229552724|ref|ZP_04441449.1| ribosomal protein L18 33 9 Op 19 50/0.000 + CDS 38354 - 38896 886 ## PROTEIN SUPPORTED gi|229552725|ref|ZP_04441450.1| ribosomal protein S5 34 9 Op 20 48/0.000 + CDS 38908 - 39093 295 ## PROTEIN SUPPORTED gi|199598850|ref|ZP_03212261.1| 50S ribosomal protein L30 35 9 Op 21 53/0.000 + CDS 39126 - 39566 730 ## PROTEIN SUPPORTED gi|229552727|ref|ZP_04441452.1| ribosomal protein L15 36 9 Op 22 28/0.000 + CDS 39566 - 40888 776 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 + Prom 40895 - 40954 3.5 37 9 Op 23 6/0.000 + CDS 41036 - 41692 572 ## COG0563 Adenylate kinase and related kinases + Term 41766 - 41800 3.3 + Prom 41701 - 41760 2.8 38 9 Op 24 . + CDS 41836 - 42054 288 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 39 9 Op 25 . + CDS 42082 - 42198 205 ## PROTEIN SUPPORTED gi|116495924|ref|YP_807658.1| ribosomal protein L36 40 9 Op 26 48/0.000 + CDS 42231 - 42596 610 ## PROTEIN SUPPORTED gi|199598856|ref|ZP_03212267.1| 30S ribosomal protein S13 41 9 Op 27 32/0.000 + CDS 42617 - 43006 650 ## PROTEIN SUPPORTED gi|116495922|ref|YP_807656.1| 30S ribosomal protein S11 42 9 Op 28 50/0.000 + CDS 43081 - 44019 1002 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 43 9 Op 29 . + CDS 44041 - 44421 614 ## PROTEIN SUPPORTED gi|199598859|ref|ZP_03212270.1| 50S ribosomal protein L17 + Prom 44710 - 44769 3.5 44 10 Tu 1 . + CDS 44956 - 45621 462 ## LC705_02461 hypothetical protein + Prom 45660 - 45719 4.8 45 11 Op 1 15/0.000 + CDS 45758 - 46594 540 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 46 11 Op 2 34/0.000 + CDS 46570 - 47436 207 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 47 11 Op 3 8/0.000 + CDS 47429 - 48226 671 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 48 11 Op 4 . + CDS 48242 - 48985 640 ## COG0101 Pseudouridylate synthase + Term 49077 - 49126 15.4 - Term 49065 - 49114 10.8 49 12 Tu 1 . - CDS 49205 - 49966 651 ## COG0789 Predicted transcriptional regulators - Prom 49987 - 50046 3.2 Predicted protein(s) >gi|225002490|gb|ACIZ01000089.1| GENE 1 858 - 1325 285 155 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 5 154 3 153 158 114 42 1e-24 MQRENISDIIETYLKTILAQEAAVEIRRAEIARRFNCVPSQINYVIKTRFTPARGYIVES KRGGGGYIRIVKVKLTDDQDLIQIMRQHIPSRLRLRDARDLLQELFDNGLISQQSGNLML AVINHETLGILDQETEEHLRSRLFLAFLDRLRYER >gi|225002490|gb|ACIZ01000089.1| GENE 2 1359 - 3872 2479 837 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 2 820 1 813 815 959 59 0.0 MLMDNLFTPSAKNVLLLAQEQAKYFHHHAVGTEHLLMALVMEKDGIAGKTLRQLGVTEND VHDEIERFTGYGTVDAASQASDSYLPYSPKGKEILAFAGDEAKRLGALKIGTEHILLGLL REDDILAARILQNLGLSLSKTRQMVFKKMGIADTAAKRRPMARGGARQDGQGTPTLDGLA RDLTQMARENRMDPVVGRDKEVRRLIQILARRTKNNPVLIGEPGVGKTAIAEGFAEKIVA GKVPDDMLNKRLMMLDMGSLVAGTKYRGEFEDRLKKIIDEIYKDGNVILFIDELHTLIGA GGAEGAIDASNILKPALARGELQLIGATTLDEYQKYIEKDAALERRFATIQVDEPTEEEA EQILKGLRPRYEAHHGVTITDEALHEAVVLSSRYITTRFLPDKAIDLVDESAAKVRLDKA NVETKADKLQDELAKLVADKEDAIDHQDFETAATIRTKEAGVKAKLADTPEPVNESGVRT DIKVTGADVAEVVSQWTGVPVTQLQKKESERLVNLEKILHQRVVGQDEAVSAVARAIRRA RSGLKDPTRPIGSFMFLGPTGVGKTELAKALAEAMFGSEDAMIRVDMSEYMEKFSTSRLI GAAPGYVGYDEGGQLTEKVRNKPYSVVLLDEVEKAHPDVFNILLQVLDDGYLTDAKGRRV DFRNTILIMTSNIGATAIRDDKTVGFGAKDPTADFNAMKSRMLAELKKSFRPEFLNRIDE TVVFHSLNKAELHEIVKIMTKTVLSRIKDQGIDVKITPAGIDAIAAAGFDPEYGARPIRR ALQTDVEDQLSELLLTGQAKTGDLIQIGAKKGKLTFTVKENKGKHKENGASKEPVKA >gi|225002490|gb|ACIZ01000089.1| GENE 3 3935 - 4096 81 53 aa, chain + ## HITS:1 COG:no KEGG:LC705_02502 NR:ns ## KEGG: LC705_02502 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 53 1 53 53 101 100.0 1e-20 MKHYLWDRFILPKQSVMAGRDFDAIWPCITLTIDTLHYFDKQVLDIVTPHAYY >gi|225002490|gb|ACIZ01000089.1| GENE 4 4314 - 7916 3215 1200 aa, chain + ## HITS:1 COG:SPy0098 KEGG:ns NR:ns ## COG: SPy0098 COG0085 # Protein_GI_number: 15674321 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 1 1199 1 1188 1188 1763 72.0 0 MAGHLVNYGKHRTRRSYARIKEVLDLPNLIEIQTNSYQWFLDEGLKEMFDDIMPIDDFQG KLSLEFVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMT KQGTFIINGAERVIVSQLVRSPGVYFHSETDKNSRVTYGTTVIPNRGAWLEYETDAKDIA YVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRTDEALKD IYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQVLAETLA DPDTGEVLAQKGTKVDRQVMDKLAPYLDRDDFKTVTYQPSDQGVMTDPIELQSIKVYSQV TPDKEINLIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTVDDIDHLGNRRIRSVGEL LQNQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA VVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDDTVLAR HKDNNIEISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPHA PLVGTGMEYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALDTYKLMKFKRSNAGKN YNQRPIVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIVLSERLVK DDVYTSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEVRDGDILV GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTREAGDELSP GVNMMVRVYITQKRKIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVP SRMNIGQVLELHLGMAARNLGIHVATPVFDGANDKDLWATVKEAGMPSDGKSVLYDGRTG EPFENRVSVGVMYYMKLSHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL EAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGDPIPKPGVPESFRVLVKELQALGLDMK VLGADKQEIELRDMDDDEDDVVSVDALAKFAAQQEEKKAHEAATQASDGQSADNSTDDKK >gi|225002490|gb|ACIZ01000089.1| GENE 5 7929 - 11591 3184 1220 aa, chain + ## HITS:1 COG:lin0286 KEGG:ns NR:ns ## COG: lin0286 COG0086 # Protein_GI_number: 16799363 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Listeria innocua # 1 1200 1 1201 1201 1806 73.0 0 MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM SPRSLEEIIYFASYVVIDPGDTPMEKKQLLTEREYREKREEYGQTFNAKMGAEAIKELLQ DVDLEKEVAELKEDLKSAQGQKRTRAIRRLDILDAFKESGNDPAWMVMDTIPVIPPDLRP MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKFYQCGVPRE MALELFKPFVMRELVKRDMASNIKNARRKIDRQDDDVWDVLEDVIKERPVLLNRAPTLHR LGIQAFEPVLVDGKSIRLHPLVCEAYNADFDGDQMAIHVPLSDEAMAEARMLMLAAHHIL APKDGKPIVTPSQDVVLGNYYLTMEQKGREGEGMIFKDTNEVLMALQNGYVHLHSRVGIA ANSFTDKPFTDEQKQKIMVTSVGKAIFNEIMPKDFPYLNEPTQDNIVNGVPDKYFIDKGE DIHAYLEDAPLIDPFKKGFLSDIIAQVFKVYKVQRTSDLLDDMKTLGYTQSTNSGLTVGI ADITNLKEKPEIVAAAHKKVATVSKQFRRGLITDDERHDRVIQIWNDAKDEIQQKLVDSF DPNNPISMMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEVPVISNFREGLTVMEMFMST HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLVVRAIREGNEMIEPLY DRLVGRFTMKDVLDPKTGDVLVKRNTLMDEDMAQKIVDAGVEAVTIRSVFTCNTKHGVCQ KCYGRNMATGEQVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGEDITQGLPRVQEI FEARNPKGEAVITEVTGEVTAIDENPAEHTREITVKGDTDTRTYSVPYASSVAVAEGDHI NRGERLTGGSIDPKQLIKVRDVMATENYLLSEVQKVYRMQGVDIGDKHVEVMVRQMLRKI RVMDPGDTNILPGTLLDIADFKEKNTQAIISGGIPATGRPVLLGITKASLETNSFLSAAS FQETTRVLTDASIRGKNDPLVGLKENVIIGKIIPAGTGMATYRHEEPKSVGTVSDSVYSI SDIEKQMKEKDNQQSDTDKQ >gi|225002490|gb|ACIZ01000089.1| GENE 6 11769 - 12272 222 167 aa, chain - ## HITS:1 COG:no KEGG:LC705_02499 NR:ns ## KEGG: LC705_02499 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 167 1 167 167 256 100.0 1e-67 MILTLFLLTVISVTKRLTSINQSVHCVLAILLGISSTTWLPFFLSIGLLMFSIADWHERS VSLINFCGWWFGIIVVFPCNLFNLMMLGSMVGGLALMSHGLGSADVLLIALLGGVLQLEA ALVITLIACISAGGHWFITRLETLPMISHIAIGYGCFSLAANCLGIF >gi|225002490|gb|ACIZ01000089.1| GENE 7 12653 - 13192 398 179 aa, chain + ## HITS:1 COG:no KEGG:LC705_02498 NR:ns ## KEGG: LC705_02498 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 179 1 179 179 303 99.0 2e-81 MEELGVKKTWHFMFKVGVYFTVILGMIVQLLSPALTLAAENPTQAVTGALTIKNQDEQGS PLNGAKYEIRNESHQVVATSSISQDGQATISNLPVGNYLPRKHSLSQVIQPLNRRKTLAS QLLSKPRYCLRAVHLPRLPVTVSVQLRRQQRRQLRALMQAQQQRQTMMLNCPIFSLMLF >gi|225002490|gb|ACIZ01000089.1| GENE 8 13162 - 23586 8849 3474 aa, chain + ## HITS:1 COG:lin2282 KEGG:ns NR:ns ## COG: lin2282 COG4932 # Protein_GI_number: 16801346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 3 1825 156 1650 1806 284 26.0 3e-75 MPNIFTNVVLKDGNGQPLGTEIEQQSTVKLEMTFIIPETSTPFPAGASFTTTLPKNQIDF AQDGSGVFDGDVAEYSFDHTTAQLTIKLLKAVSFGSWKVNITTNFKQLTANDSLDQTLVF HTKDHDTKIPISFKSNAEPVEVADPKATPQSFNPTGIEGSAKFNLNGAETSKTDPTKWDS DPAKRSKNADMELTLTAQGSGETYPKSLTFSDSDLAKIKVSSAPVNVLGDFTEATKSLVA GRDYHAVLSDDKRTVKIYLTGGFKKSTGYQVDYTASIDRSLDDTGKMGSALVEGYRFLTG SQTNNGYGYKSATMRNSGVAITKSGDITNNFRAMNWQIDWDFSMDTMKAGATLTDRFGKQ VNGTDDHGQPKIEKDDNQSLDTQSLKVFQVTFDQNANPTVSKDDIAKYFKLTDKGNGEFT LTYLGGGDLPDNASFRIQYQTKLKNTPENGSDISNIVNDQRNHYTHATYPVRLPSAIQKV SGKIDAYLGQMTWRINANRTFRNMRDGKIFDLFPDGVDKLDTDPTAANINTISGEYVTKD DDDGANDGILVYAQDPDGNRTLLKPETDYTMSTNDGDVQTAVKQYNDKDKIGQIDANGQE KGIRGFVVTLKGKYAETDSQIVIYTHTKLDMLKLGQVGHDNDALAKALNNRAFFFFDLPP GDDEVASGGGSSTPTPQKGSFSGALKNSWSDAPDTQYWGVLVNQLGLKYGHLHLTDILPR FDGVNYELIPDSIKFYEVTGPDGVDPSNTGDPTTSGDVKEIKTNPYYGTSGWVSTALTAD DAKQQSLLPTNPPDTWLKNNKDLTQQLDFDFPNIDTGRVWVVFKTKRANQWNYNDPNFTN QATVTDTKTTTTIPTFNPSASKSAQSYWTPINKTVSEDAKQKNVLNWHVQLENIQDKYRP MVNPIITDTLEPYGSGAEINATSFKVTLQVGSADEVTLDKGKDYDLALDGNNFTVTFHRT FGNLTQTDGNPLNNYRVNVYYATSSKNSGTVGNTSAVAWDGSQTTKKPSDGVPENARIAT TNGFLPSWDSGISGETITQLANLVVEKKDSVSGAPIPGVKFRVSDGTHTFEATTKLDANS QNSTATFQGLPLGDYTLTELNTPAGYKPMAPQKIRLNTTSDSGTAIQTQEVENQPYQIIL TKYDNRAEGQSEANRKQYQLANATYDLIDTDTQKKLLTDLKTNDDGQITVGTATSFSGNY TNDDFKPDLKAGQYVLEGLKPGHYKLIEREAPEHYRGDAHDQANVTSGPDKQLWIDSLNA GSVTTAISDETPTATVAAYDQKKPGQLDLKKQAETIKDDHFPDRQPMTGAAFKLYRYGDD GKLDYDKSWQATVTNSDGTVSFNANDLYEGKYQLIETKAPAGYVIPTDLAKGVDVEITGD QTLKFPTIEEPVFRRAVTLNKTDGDFGNPIAGITYALYRENGTELAKDLVTNEKGQVNLP FNLPAGSYYFKETKTLPPYRPNTDKHSFTVKQTDQTQTAAALATENKQKPITVDVTNYQV KTINVKKVDSQYKDHMLAGATFRLTNSAGYSRDITTGKDGLASFGDLLLGHYSLTEVKAP AGYKLDTTVYPITLASGETPSAITVTKEIADDPYQVALTKYDNRADKSDDAATLKKYLLP GATYKLVDTVKNKTLKAGMKTNSDGQLKFGAASSFDTPLKAGEYAVEGLQSDRAYRLVET EAPKHYRGDASDQANLTTGAERQRWEASLRAGSVNFTIKTDQTQLKVTATNQKKPGQLAI KKQAETIKDDKFPDRQPMTGAEFKLYRYDEDGTLDRDKTWTTTITNNDGTVTFNDADLYE GKYQLVETKAPTGYVIPDDLAKGIDVTITGDQTLTLPTIEEPVFRRSIALNKTDGNFGNP IAGITYALYREDGTELAKDLVTNEKGQVNLPFNLPAGSYYFKETKTLPPYRPNTDKHPFT IKQTDLTQTAADLATQNKQKPITVGVTNYQIKTLNVQKVDRTYSDHVLAGAVFRLTNSTG YSRDVTTDEKGIASFGDLLLGNYSLTEIKAPSGYRLDPTVHAITLSSAITPTPITVNKQI ADDPYQVTLTKYDNRVKKTDDAATLKKYLLPNATYKLVDTVTNKTLKADLKTNDDGQLKF GAASSFDTPLKAGEYTIDGLKPDRAYRLVETEAPKHYEGDATDQKEHTSGAQKDAWEKSL AAGSVDFTIKADETQVKLTATNQKKPGQLAIKKQAETIKDDKFPDRQPMTGAEFKLYRYQ EDGKLDQSRSWHTVITNNDGTVTFKDLDLYEGKYQLVETKAPTGYVIPDDLAKGVDVEIT GDQTLKFPTIEESVFRRSIALNKTDGNFGNPIAGITYALYREDGTELAKDLVTDEKGQVN LPFNLPAGSYYFKETKTLRPYRPNTDKHPFTVKQTDLTQTANALAAENKQKPIAVSVTNY QIKTLNVQKVDRQYTDHTLAGAIFRLTNSTGYSRDITTDEKGIASFGDLLLGSYSLTEVK APSGYRLDPTVHAITLSSAITPTPITVNKQIVDDPYQVTLTKYDNRVKKTDNAATLKKYL LPGATYKLVDTVTNKTLKADMKTNDDGQLKFGAASSFDTPLKAGEYTVEGLKADNTYRLV ETEAPKHYEGDATDQTKHTSGAQKDAWEKSLAAGNVDFTIKGSQTQVKLTATNQKKPGQL AIKKQAETIKDDKFPDRQPMTGAEFKLYRYDEDGTLDRDKTWTTTITSNDGTVTFNDADL YEGKYQLVETKAPTGYVIPDDLAKGIDVTITGDQTLTLPTITEPLYRRTAQLAKTDGDFG NPIAGITYALYKDDGTELAKDLVTNKDGQVTLPFDLPAGQYYFQETGTLPPYRPNTDKHP FTVKQTDLTQTAADLAAQNKQKPITVGVTNYQIKTLNVQKVDRQYTNHTLAGATFRLTNS TGYSRDVTTDEKGIASFGDLLLGTYSLTEVKAPSGYRLDPTVHAITLSSAITPTPITVNK QIADDPYQVTLTKYDNRVKKTDDAATLKKYLLPGATYKLVDTVTNKTLKADMKTNDDGQL KFGTASSFETPLKAGEYTIEDLKSDRAYRLVETEAPKHYEGDATDQKEHTSGARKEAWEK SLAAGNVDFTIKADEAQVKLTATNQEKAGQVVITKKADTTGDQRFPGKMTMIGAKFTLYR YREDGTVDHSKSWHATITNQNGIVTLSDHDLYEGKYQLLETQAPRGYVIPDNLAKGIDVN VKGDQKISLDPIIEPEFTRSVQLQKTDGNFDKQLGGVTFNLYGSDDRVLAKDLVTDRNGQ IKLPFNLPIGTYYFEETKTLPKYELNTDKITFKVEQTDLTQTAAALAKLNQQQPIKVQVA NYQVNTLVVKKVDAANTDHALAGAVFRLTNDQGYRQEITTDANGLASFNHLKLGRYWLTE IKAPAGYSINPDYAQPVAVEVKAGDTMQLVIADKRHTLPSTDGTGGAGTGSGSEAGSEAA GSGSHGNNVRHEQPSRRLLFGSFGDRDTVTLVLLGILILTIAGSTVILRRRKRL >gi|225002490|gb|ACIZ01000089.1| GENE 9 23974 - 24390 706 138 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598825|ref|ZP_03212236.1| 30S ribosomal protein S12 [Lactobacillus rhamnosus HN001] # 1 138 1 138 138 276 100 2e-73 MPTINQLVRQGRKSKSTKSDSPALNFGYNSKKKSLTSNPAPQKRGVATRVGTMTPKKPNS ALRKYARVRLSNLIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGV DGRMQGRSKYGAKRPKKK >gi|225002490|gb|ACIZ01000089.1| GENE 10 24569 - 25039 810 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116495953|ref|YP_807687.1| 30S ribosomal protein S7 [Lactobacillus casei ATCC 334] # 1 156 1 156 156 316 100 1e-85 MPRKGSVAKRDVLPDPVYNSKLVTRLINHLMIDGKRGKASTILYDAFDMIKKQTGNEPLD VFEEAMKNVMPVLEVKARRIGGSNYQVPIEVRPDRRTTLGLRWIVQYSRQRGEHTMDERL AKEIMDAANNTGAAVKKREDTHKMADANRAFAHYRW >gi|225002490|gb|ACIZ01000089.1| GENE 11 25129 - 27231 2177 700 aa, chain + ## HITS:1 COG:BH0131 KEGG:ns NR:ns ## COG: BH0131 COG0480 # Protein_GI_number: 15612694 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Bacillus halodurans # 5 694 3 691 692 1033 74.0 0 MANKREFPLDRTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMPQEQE RGITITSAATTAFWKDHRVNIIDTPGHVDFTIEVERSLRVLDGAITVLDAQSGVEPQTEN VWRQATTYGVPRLVFVNKMDKIGADFDYSLSTLHDRLQANAHAVQLPIGAEDKFEGVIDL IEMKADLYDEDELGTKWDTVDIPDEYKEAAEKAHNELVEAVADVDDGIMDKYLEGEEISN AELKAAIRKATINLEFYPVLAGSAFKNKGVQMLLDAVIDYLPSPLDVRPYHATDPDTGDA VELTAGDDKPFAALAFKVATDPFVGRLTYIRVYSGTLEAGSYVLNATKDNRERVGRLLQM HSNHREEIPEVFSGDIAAAIGLKNTTTGDSLTDVNHPLILESLDVPDPVIQVSIEPDSKE DQDKLDIGLQKLSEEDPTFKAETNPETGETLIAGMGELHLDIMVDRLKREFKVAAKVGEP QVAYRETFTKEASAQGKFVRQSGGKGQYGDVWIEFTPNEEGKGFEFENAIVGGVVPREYI PAVEQGLKEAMANGVLAGYPLIDVKAKLYDGSYHEVDSSEAAFKVAASMALRNASKNAGA VILEPIMHVEVVAPEEYLGDVMGQITARRGRVEGMEARGNAQLVNSMVPLAEMFGYATTL RSATQGRGTFTMTFDHYEAVPKSIQEEIIKKNGGGVATKD >gi|225002490|gb|ACIZ01000089.1| GENE 12 27663 - 28694 655 343 aa, chain + ## HITS:1 COG:no KEGG:LC705_02492 NR:ns ## KEGG: LC705_02492 # Name: not_defined # Def: transcriptional regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 343 1 343 343 689 100.0 0 MSSQERIVTIMLRLMRGEVLNKQTLMHEFNKDESSIRRDISVIKRMFDDVMDEPDVFVAS TTGDYRFKSTVLSTGHSPLNDGQLLAMTLILTASRGLATSEMKTLLHQLLPEGPEHRSLS DVVRNPIFEYKGVPKVALTARLARLSQAILKHETISFDHTYHGVTRHFDRRLPTGLYFGD LFFYLIIDGSDEQPDDPDNGQFVRFRLDDMSHITYHGRQPQHAYEARFRGGRLQKHTWYP YLGKPINLEILYGYDPRFVLDRFPDAIVHDEKVDEQPTSKNPYAQKFYHITIPVNDGFGI RMWLLGQAGLVKVLAPKYIRDYVIRGLEEGLAHYRHEERNRLR >gi|225002490|gb|ACIZ01000089.1| GENE 13 28924 - 29487 559 187 aa, chain + ## HITS:1 COG:FN1983 KEGG:ns NR:ns ## COG: FN1983 COG0450 # Protein_GI_number: 19705279 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Fusobacterium nucleatum # 1 187 1 188 188 239 60.0 2e-63 MSFIGQHLPDFSLTAYQNGDFHTVTNKDLQGKWAVICFYPADFSFVCPTELGDLQDHYDR FKAAGAEIYSASEDTEFVHMAWAETSPTIKKIQYPMLADPAGKLATALDVRDEASGQAFR GTFIIDPDGVIQAYVVNNFGIGRNADEILRTLQAAQFVAAHGDQVCPANWQPGEKTLKPG ADLVGKL >gi|225002490|gb|ACIZ01000089.1| GENE 14 29659 - 30096 481 145 aa, chain - ## HITS:1 COG:YPO3717 KEGG:ns NR:ns ## COG: YPO3717 COG3223 # Protein_GI_number: 16123855 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 14 120 18 124 135 61 32.0 5e-10 MKFDHYKKFINVALDLLLGLLAIVVVIFMLRYIIDIGSLILRPLSADLFGKVIQEVTSFF MLFEFVIMLIRYIEEGHHIPIRYLILISMTAILRQLLVLHDRGTETLLLTLAILVLAGVL TVFSFVSGDFKHSRGEQDIDIDQHF >gi|225002490|gb|ACIZ01000089.1| GENE 15 30427 - 30735 516 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598831|ref|ZP_03212242.1| 30S ribosomal protein S10 [Lactobacillus rhamnosus HN001] # 1 102 1 102 102 203 100 2e-51 MAKQKIRIRLKAYEHRILDQSADKIVDTAKRTGATISGPIPLPTERTIYTVLRSPHKYKD SREQFEMRTHKRLIDIVNPTPKTVDALMKLDLPSGVDIEIKL >gi|225002490|gb|ACIZ01000089.1| GENE 16 30761 - 31393 1074 210 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229552708|ref|ZP_04441433.1| ribosomal protein L3 [Lactobacillus rhamnosus LMS2-1] # 1 210 1 210 210 418 100 1e-116 MARKGILGKKVGMTQVFTDNGELVPVTVIDVTPNVVMQVKTVESDGYEAVQLGYGDMREV LTNKPSVGHAKKADTTPKRFVREIRDVALSDYEVGSEVKADEFAAGDIVDVTGTSKGHGY QGNIKKDGQSRGPMAHGSRYHRRPGSLGAIINKVFKGKKLPGRMGNHTRTMQNLQVVAAD TEHNVLLIKGNVPGANKSFVTIRSAVKAAK >gi|225002490|gb|ACIZ01000089.1| GENE 17 31416 - 32039 1045 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229552709|ref|ZP_04441434.1| ribosomal protein L4 [Lactobacillus rhamnosus LMS2-1] # 1 207 1 207 207 407 100 1e-113 MANVTLYKQDGSENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD GDLVVVDGLSFDDPKTKAFLNVLDGLKVNDKALVVLEDGNDVAAKAARNLPNVKVVPAEG INVLDAVNYKKLILTQSALQKIEEVLA >gi|225002490|gb|ACIZ01000089.1| GENE 18 32039 - 32341 496 100 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598834|ref|ZP_03212245.1| Ribosomal protein L23 [Lactobacillus rhamnosus HN001] # 1 100 1 100 100 195 100 4e-49 MEARDIILRPIVTEQSMAEMDNRKYTFEVAIHATKPQVRKAVEEIFGVKVVNVNIANVRG KKKRQGRYEGMTRRRRKALVALSADSKEIKIFADEDNDNK >gi|225002490|gb|ACIZ01000089.1| GENE 19 32370 - 33206 1447 278 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598835|ref|ZP_03212246.1| 50S ribosomal protein L2 [Lactobacillus rhamnosus HN001] # 1 278 1 278 278 561 99 1e-159 MAIIKYKPTSNGRRNMSGSDFAEITKTKPEKTLLVSQSHTAGRNAHGHITVRHRGGGHKQ FYRVIDFKRNKDNMAATVKAIEYDPNRTANIALLHYEDGVKSYILAPKGLKVGDKVYSGD DVDIKVGNTLKLKNIPAGTTIHNIELKPGKGAQLARSAGVSAQLLGKDNDKYVTIKLASG EVRLVLAENRATIGAVGNEQHELISIGKAGRKRWLGFRPTVRGSVMNPNDHPHGGGEGKA PIGRPSPLSPWGKKTLGKKTRDHKAKSEKFIVRHRKTK >gi|225002490|gb|ACIZ01000089.1| GENE 20 33246 - 33527 490 93 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116495943|ref|YP_807677.1| ribosomal protein S19 [Lactobacillus casei ATCC 334] # 1 93 1 93 93 193 100 2e-48 MGRSLKKGPFADAHLLKKIEAQADNDKKTVIRTWSRRSTIFPSFIGYTIAVYDGRKHVPV FVSEDMVGHKLGEFVPTRTFRGHNTDDKKTTAR >gi|225002490|gb|ACIZ01000089.1| GENE 21 33545 - 33898 569 117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116495942|ref|YP_807676.1| 50S ribosomal protein L22 [Lactobacillus casei ATCC 334] # 1 117 1 117 117 223 100 1e-57 MADQITSATATAKTVRIAARKARLVIDLIRGRDVAEALAILEFTPRSGSPIIEKVLKSAI ANAEHNYDLDAQNLYVSKAYVNEGPTLKRFRPRAKGSASPINKRTSHVTVVVSEKEA >gi|225002490|gb|ACIZ01000089.1| GENE 22 33912 - 34574 1133 220 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598838|ref|ZP_03212249.1| Ribosomal protein S3 [Lactobacillus rhamnosus HN001] # 1 220 1 220 220 441 99 1e-123 MGQKINPTGFRVGVIRDWDAKWYADKDFADYLHEDIEIRNFINKKLQDASVSRIEIERAA KRVNISVHTAKPGMVIGKGGSEVENLRKQLNKLTGRQVHINIVEIKKPDLDAKLVGENIA RQLEQRIAFRRAMRQAMQRTMRAGAKGIKTQASGRLNGADIARREHYNEGLVPLHTLRAD IDYAWEEAATTYGRIGIKTWINRGEILPEKPQQNNAKGGK >gi|225002490|gb|ACIZ01000089.1| GENE 23 34578 - 35012 743 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598839|ref|ZP_03212250.1| 50S ribosomal protein L16 [Lactobacillus rhamnosus HN001] # 1 144 1 144 144 290 100 9e-78 MLVPKRVKHRREFRGKMRGAAKGGKNVDFGEYGLEALESHWITNRQIEAARVAMTRYMKR GGKVWIRIFPHKSYTSKGVGVRMGNGKGAPTGWVAVVKREKIMFEVGGVSEAVAKEALRL ASNKLPIRTKIVSREEVGGQSNEG >gi|225002490|gb|ACIZ01000089.1| GENE 24 34990 - 35196 318 68 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|191639420|ref|YP_001988586.1| 50S ribosomal protein L29 [Lactobacillus casei BL23] # 1 68 1 68 68 127 95 2e-28 MGNQMKAKEITALTTAEMLDKEKQYKEELFNLRFQQATGQLENTARLKQVRKNIARIKTV LRQQELNK >gi|225002490|gb|ACIZ01000089.1| GENE 25 35217 - 35480 430 87 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598841|ref|ZP_03212252.1| Ribosomal protein S17 [Lactobacillus rhamnosus HN001] # 1 87 1 87 87 170 97 2e-41 MAERNSRKVYQGRVVSDKMDKTITVEVSTYKTHPVYGKRVKYSKKFYAHDEDNSAKVGDI VQIAETRPLSRNKRFRLLNIVEKAVII >gi|225002490|gb|ACIZ01000089.1| GENE 26 35512 - 35880 592 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116495937|ref|YP_807671.1| 50S ribosomal protein L14 [Lactobacillus casei ATCC 334] # 1 122 1 122 122 232 99 3e-60 MIQQESRLKVADNSGAREILVIKVLGGSYRKTGNIGDVVVATVKQATPGGVVKKADVVKA VIVRTKSGARRADGSYIKFDENAAVIINADKSPRGTRIFGPVARELRDGDFMKIVSLAPE VL >gi|225002490|gb|ACIZ01000089.1| GENE 27 35901 - 36221 526 106 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239630340|ref|ZP_04673371.1| LSU ribosomal protein L24P [Lactobacillus paracasei subsp. paracasei 8700:2] # 1 106 1 106 106 207 96 1e-52 MRYMKFKTGDKVRVMRGKDAGKEGQITKVLKSADKVVVEGINMIKKHQKPNNTNPQGGII DKEAPIHVSNVMLLDPETNKPTRIGSEVKDGNKVRIAKKSGTAIDK >gi|225002490|gb|ACIZ01000089.1| GENE 28 36246 - 36788 905 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598844|ref|ZP_03212255.1| 50S ribosomal protein L5 [Lactobacillus rhamnosus HN001] # 1 180 1 180 180 353 100 1e-96 MENRLEERYSKEIAPALVSKFNYKSTMQAPKIEKIVLNMGVGDATQNAKLLDEAVEELTL ISGQHPLITKAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDKLINVSLPRVRDFHGISP KSFDGRGNYTLGVREQLIFPEIDYDKVNRVRGLDVVIVTTANTDEEALELLTQVGMPFAK >gi|225002490|gb|ACIZ01000089.1| GENE 29 36803 - 36988 328 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598845|ref|ZP_03212256.1| Ribosomal protein S14 [Lactobacillus rhamnosus HN001] # 1 61 1 61 61 130 98 1e-29 MAKKSMIAKNKRPAKFAVQEYTRCQRCGRPHSVYRKFKLCRICLRELAHAGQIPGMRKAS W >gi|225002490|gb|ACIZ01000089.1| GENE 30 37014 - 37412 659 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116495933|ref|YP_807667.1| ribosomal protein S8 [Lactobacillus casei ATCC 334] # 1 132 1 132 132 258 100 5e-68 MVLTDPIADYLTRIRNANMVRHESLVVPASKMKKDISEILKREGFIRDYEVIDDDKQGVI RIFLKYGKNNERVISGLKRISKPGLRSYVKSDAVPKVLNGLGIAIISTSEGVITDKEARA KNVGGEVLAYVW >gi|225002490|gb|ACIZ01000089.1| GENE 31 37443 - 37973 902 176 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598847|ref|ZP_03212258.1| 50S ribosomal protein L6 [Lactobacillus rhamnosus HN001] # 1 176 1 176 176 352 99 3e-96 MSRIGYKVIKVPAGVTVTKDGDNITVKGPKGELTRHFAPEIELHQEGDEINFTRPDDSYK AIHGTMRANLNNMVVGVTEGYKKEMKLVGVGYRAQKQGEKLVLNVGYSHPVEMTAPKGVT VEVPSTTQIIISGISKQVVGQFAAVVRSVRAPEPYKGKGIRYVDEHVRRKEGKTGK >gi|225002490|gb|ACIZ01000089.1| GENE 32 38002 - 38370 606 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229552724|ref|ZP_04441449.1| ribosomal protein L18 [Lactobacillus rhamnosus LMS2-1] # 1 122 1 122 122 238 99 7e-62 MNIVISKPDKNKTRQRRHARVRGKISGTSERPRLNVFRSNKNIYAQLIDDVAGVTLASAS TLDKDIKDPENKTDAAAQVGALIAKRAVADGHKVVVFDRGGYLYHGRVAALAEAARENGL EF >gi|225002490|gb|ACIZ01000089.1| GENE 33 38354 - 38896 886 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229552725|ref|ZP_04441450.1| ribosomal protein S5 [Lactobacillus rhamnosus LMS2-1] # 1 180 1 180 180 345 100 2e-94 MASNSRKKEDNQHMASFIDPNQLDLEDQVVAINRVTKVVKGGRRLRFAAIAIVGDKNGHV GFATGKAQEVPEAIRKAVDAAKKSLIEVPIVGTTIPHEVIGHFGAGEVLLKPAEEGSGVA AGGAIRSVMELAGIADITSKSLGRNTPINMIRATMDGLTQLRTREQVAELRGVSASSLED >gi|225002490|gb|ACIZ01000089.1| GENE 34 38908 - 39093 295 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598850|ref|ZP_03212261.1| 50S ribosomal protein L30 [Lactobacillus rhamnosus HN001] # 1 61 1 61 61 118 100 8e-26 MAQLKITLTRSAAHRLPKQRKIVKELGLNRVNSSVIKPDNAATRGAIFQISHLVSVEEIK D >gi|225002490|gb|ACIZ01000089.1| GENE 35 39126 - 39566 730 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229552727|ref|ZP_04441452.1| ribosomal protein L15 [Lactobacillus rhamnosus LMS2-1] # 1 146 1 146 146 285 100 3e-76 MQLHELKPSVGSRHARKRLGRGTSSGQGKTAGKGTKGQLARQGGKTRLGFEGGQMPLFRR MPKRGFNNINRKEYAIVNLSDLNRFDDGAEVTPAALIDAGIVKNEKNGVKLLADGKLEKK LTIKVAKASTAAKAAVEAAGGSIEVI >gi|225002490|gb|ACIZ01000089.1| GENE 36 39566 - 40888 776 440 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 10 436 19 443 447 303 39 1e-81 MLRTLKNALKVKDIRNKILFTLAVLLVYRLGTLIAVPGVNAKALQSIGSTGLISLLDTVS GGGLAQYSIFSMGVSPYITAQIVVQLLQMDIVPKFVEWSKQGEVGRRKLNQVTRYLTIAF GFFQAIGITAGFQTLSSMGLVKNPSVSTYITIGIILTGGTMLLTWMGEQITDKGLGNGVS LLIFSGIVARLPSGLQELYRDNVQVYSGSEIWKGIAFLAALAVIVILVITFVTWVQQANY KIPIQYTRRVTSAGSNSYLPLKVNVAGVIPVIFASSFIVTPQTILMAFQKNHGTDGWYQV MTNIFNMQKPAGTAIYTLLIILFTFFYAFVQVNPEKVAENLTKQGSYIPGVWPGKETENY ISRLLMRLSTVGALFLGLVALLPQLAANIWGLPQSIGLGGTSLLIVVMTAIELVRQLDGL LMKREYVGFIRGDLVKNDKK >gi|225002490|gb|ACIZ01000089.1| GENE 37 41036 - 41692 572 218 aa, chain + ## HITS:1 COG:lin2760 KEGG:ns NR:ns ## COG: lin2760 COG0563 # Protein_GI_number: 16801821 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Listeria innocua # 1 215 1 214 215 289 65.0 3e-78 MNLILMGLPGAGKGTQAERIEDTYPIAHISTGDMFRAAMAAGTALGKEAKGFIDKGQLVP DSVTNGIVKERLAESDTDAGYMLDGFPRTIQQAEALETITADLKKPLDAVINIDVAPAKL VDRLSGRFICKTCGATYHKIYNPPKVAGTCDRCGGHEFFQREDDKPETVKNRLKVNIEMN TPLLDFYQKKGLLHTVNGDQDIDKVFADIKTILAAVAK >gi|225002490|gb|ACIZ01000089.1| GENE 38 41836 - 42054 288 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 115 76 5e-25 MAKDDVIEIQGTVTDTLPNAMFKVKLENGAEILAHVSGKIRMHYIRILPGDKVTVELSPY DLTKGRITYRFK >gi|225002490|gb|ACIZ01000089.1| GENE 39 42082 - 42198 205 38 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116495924|ref|YP_807658.1| ribosomal protein L36 [Lactobacillus casei ATCC 334] # 1 38 1 38 38 83 100 2e-15 MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG >gi|225002490|gb|ACIZ01000089.1| GENE 40 42231 - 42596 610 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598856|ref|ZP_03212267.1| 30S ribosomal protein S13 [Lactobacillus rhamnosus HN001] # 1 121 1 121 121 239 100 2e-62 MARIAGVDLPRGKQIVIALTYIYGVGKTTAQKVLKTAGVPEDVRQDDLTPEQEDKIRAAL DSYKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKKATMAGKK K >gi|225002490|gb|ACIZ01000089.1| GENE 41 42617 - 43006 650 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116495922|ref|YP_807656.1| 30S ribosomal protein S11 [Lactobacillus casei ATCC 334] # 1 129 1 129 129 254 100 5e-67 MAGRKTTRKRRVRKNVESGVAHIHSTFNNTLVMITDPRGNAIAWSSAGALGFKGSRKSTP FAAQMAAEAAAKESMEHGMKSVEVAVKGPGSGREAAIRSLQATGLEVTAIRDVTPVPHNG SRPPKRRRV >gi|225002490|gb|ACIZ01000089.1| GENE 42 43081 - 44019 1002 312 aa, chain + ## HITS:1 COG:BS_rpoA KEGG:ns NR:ns ## COG: BS_rpoA COG0202 # Protein_GI_number: 16077211 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus subtilis # 1 312 1 314 314 437 74.0 1e-122 MIEFEKPNITKVDESTNYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVSSIQIDGVL HEFSTIDGVLEDVTQIILNIKKLALKMNTDEDKNIEIDVNGPAKVTAADIVADPDVEVLN PEQYICTVADGGHFHVRMTVKKGRGYVAADQNKSDDMPIGVLPIDSIFTPISRVNYQVES TRVGRRNDFDKLTLDVWTNGSISPREAISLAAKILTEHLDIFVNLTDEAKNAEIMVEKEE THKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTNKTEADMMKVRNLGRKSLEEVKNK LADLGLGLRKED >gi|225002490|gb|ACIZ01000089.1| GENE 43 44041 - 44421 614 126 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598859|ref|ZP_03212270.1| 50S ribosomal protein L17 [Lactobacillus rhamnosus HN001] # 1 126 1 126 126 241 100 8e-63 MSYRKLGRTSSQRKAMLRDLTTDLLINERIVTTEARAKEVRSTAEKMITLGKRGDLHARR QAAAYVRNEIASVEEQEDSVIVKSALQKLFSDLAPKYADRKGGYTRILKTAPRRGDGAPM VIIELV >gi|225002490|gb|ACIZ01000089.1| GENE 44 44956 - 45621 462 221 aa, chain + ## HITS:1 COG:no KEGG:LC705_02461 NR:ns ## KEGG: LC705_02461 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 221 1 221 221 375 100.0 1e-103 MRTWFHYRTPLQLGLLLVSGWTILSILFVVLILAFTPASTSIGGLFIPTVYRLDNGAVAI DWSSYLWLFAALCGYLMGARFRRSKTPFSLMKAYTPLIVLWFLVVVLAQWYPLANLTYPH SLDGFLLQVILNFSWVMPAGSISLLVGLSAKGGRVALMFWLIFLIQSQFYRQLVVNGQSR FGIVMSHVGMVQVQAWLLGLIALIFTVFFGFLCTDPDITKR >gi|225002490|gb|ACIZ01000089.1| GENE 45 45758 - 46594 540 278 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 1 259 126 384 398 212 43 3e-54 MGNVIHVQHLNYTYPEAKRQALTDVSFDVAKGEWLAIIGHNGSGKSTLAKNLNGLLAPES GTVEVAGMTLSEETVWDIRAKVGIVFQNPDNQFVGATVADDVAFGLENRGVPRDDMIRRV DEALKRVGMTAFADREPARLSGGQKQRVAIAGIIAQRPEIIILDESTSMLDPAGRQEVLG VIRELKDELGLTVLSITHDIDEAASAHRIILLNDGKINEIGTPSEIFAHGTDLLRLGLDV PYSERLKDALIQRGVTMPEAYLDNERLVDYLWTLHSTM >gi|225002490|gb|ACIZ01000089.1| GENE 46 46570 - 47436 207 288 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 8 234 10 223 311 84 31 1e-15 MDITFDHVSFTYQAGTPFAGDGIKDVSGTIHDGSYTAIIGHTGSGKSTILQHLNALLKPT SGTVTIGDKVITNETSNKNLKPLRQKVGMVFQFAENQLFEQTVAKDIAFGPQNFGVSEQD ALALADKMITMVGLPHDVLEKSPFDLSGGQMRRVAIAGVLAMQPEVLVLDEPTAGLDPAG RHEMMQMFERLHREEGQTIVLVTHQMDDVADYADTVWVMAKGHLIKTGTPREIFADSAWL KANQLGLPKTAQMAQQLTAKGFHFDPQPLTEAELADQLLPQIGGGQRG >gi|225002490|gb|ACIZ01000089.1| GENE 47 47429 - 48226 671 265 aa, chain + ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 252 2 253 266 304 61.0 9e-83 MDKLLLGRYIPGHSWIHELDPRTKLMASFYYIGIVFLANNWQTYLMMFVATLFMIWLSGI KLGFFLRGVRPLIWLILFTVALQVLFVRGGTVYWHWGWLWITKLGLINGAFIFVRFVLII FMSTLLTLTTQPLSLADAVESLLKPLRVIHVPVTELALVLQIALRFVPTLMDQTTKIMNA QRARGVDFGEGNIFQQMKAVVPLLIPLFVSSFTTADELATAMEARGYQGGDNRTKYRILR YHQRDWIAAGGMLVLTGLLLLLRAY >gi|225002490|gb|ACIZ01000089.1| GENE 48 48242 - 48985 640 247 aa, chain + ## HITS:1 COG:SP1599 KEGG:ns NR:ns ## COG: SP1599 COG0101 # Protein_GI_number: 15901439 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 247 1 247 249 246 51.0 2e-65 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG QVISFDYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKRYRYRVARGYY TNPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEEDP ATNELIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPASGL YLKEVYY >gi|225002490|gb|ACIZ01000089.1| GENE 49 49205 - 49966 651 253 aa, chain - ## HITS:1 COG:lin0530 KEGG:ns NR:ns ## COG: lin0530 COG0789 # Protein_GI_number: 16799605 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 5 229 3 222 246 120 36.0 2e-27 MTYSTKQLADLAGVTIRTLRYYDKIGLLKPTRNPNNDYRQYTQAEVNRLQVIRFLQLFEM PLSQIKQLLDGPTDQLTATLIRQRQRITAKRDQLSLLLQTLDQTLEKGVNTMTDNEKFAA FKQQAIQHNEEHFGKEVRDQYGEDVVEASNEKFRKMSQAQVAQLTALQQKILEELKPLVG TTDYNTAAAKHLFKLHKQFLQLTWPSEQYSEKAHRGLAAMYVSDPRFTKYYEDGTGKKGA SKTLNAIIRHYTR Prediction of potential genes in microbial genomes Time: Wed May 25 20:05:59 2011 Seq name: gi|225002489|gb|ACIZ01000090.1| Lactobacillus rhamnosus LMS2-1 contig00098, whole genome shotgun sequence Length of sequence - 48341 bp Number of predicted genes - 47, with homology - 46 Number of transcription units - 29, operones - 11 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 9 - 52 6.3 1 1 Tu 1 . - CDS 74 - 295 340 ## LGG_02452 hypothetical protein - Prom 332 - 391 4.9 2 2 Op 1 36/0.000 - CDS 480 - 1190 214 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 3 2 Op 2 . - CDS 1192 - 2250 916 ## COG0577 ABC-type antimicrobial peptide transport system, permease component - Prom 2366 - 2425 4.1 + Prom 2176 - 2235 1.7 4 3 Tu 1 . + CDS 2331 - 2948 491 ## COG1309 Transcriptional regulator + Prom 3094 - 3153 5.7 5 4 Op 1 59/0.000 + CDS 3230 - 3676 762 ## PROTEIN SUPPORTED gi|199598872|ref|ZP_03212283.1| 50S ribosomal protein L13 6 4 Op 2 . + CDS 3690 - 4082 664 ## PROTEIN SUPPORTED gi|116495906|ref|YP_807640.1| ribosomal protein S9 + Term 4133 - 4178 11.2 + Prom 4255 - 4314 4.1 7 5 Op 1 3/0.000 + CDS 4482 - 5666 687 ## COG0477 Permeases of the major facilitator superfamily + Prom 5683 - 5742 4.9 8 5 Op 2 35/0.000 + CDS 5890 - 7680 1170 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 9 5 Op 3 . + CDS 7667 - 9502 166 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 10 5 Op 4 . + CDS 9599 - 9814 213 ## LC705_02445 growth regulator 11 5 Op 5 . + CDS 9814 - 10161 281 ## COG2337 Growth inhibitor 12 6 Tu 1 . + CDS 11007 - 11675 642 ## COG3382 Uncharacterized conserved protein + Term 11773 - 11827 10.5 + Prom 11705 - 11764 4.7 13 7 Op 1 24/0.000 + CDS 11916 - 12734 772 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 14 7 Op 2 . + CDS 12727 - 13428 292 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 15 7 Op 3 . + CDS 13425 - 14666 795 ## LC705_02437 acyltransferase 16 7 Op 4 . + CDS 14617 - 16149 1205 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 17 7 Op 5 . + CDS 16139 - 17113 1030 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components + Term 17169 - 17208 -0.8 - Term 17221 - 17265 4.2 18 8 Tu 1 . - CDS 17320 - 20043 1736 ## LC705_02433 alpha-L-rhamnosidase 19 9 Tu 1 . + CDS 20681 - 22195 1256 ## COG2211 Na+/melibiose symporter and related transporters + Prom 22518 - 22577 6.0 20 10 Op 1 11/0.000 + CDS 22699 - 23109 165 ## PROTEIN SUPPORTED gi|15903216|ref|NP_358766.1| CrcB protein 21 10 Op 2 . + CDS 23103 - 23453 192 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 22 11 Tu 1 . - CDS 23744 - 24169 324 ## LC705_02429 hypothetical protein - Prom 24398 - 24457 4.2 23 12 Tu 1 . + CDS 24150 - 24338 60 ## LCABL_26070 possible cell surface protein - Term 24920 - 24958 7.1 24 13 Tu 1 . - CDS 24980 - 25129 124 ## LC705_02427 hypothetical protein - Prom 25228 - 25287 4.8 - Term 25223 - 25275 0.5 25 14 Tu 1 . - CDS 25324 - 26226 901 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 26340 - 26399 4.5 26 15 Tu 1 . + CDS 26669 - 27076 302 ## LC705_02425 hypothetical protein - Term 27153 - 27198 0.9 27 16 Tu 1 . - CDS 27204 - 27845 511 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 28063 - 28122 2.6 - Term 27940 - 27977 5.1 28 17 Tu 1 . - CDS 28124 - 29041 668 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Prom 29033 - 29092 3.8 29 18 Op 1 . + CDS 29239 - 29358 109 ## 30 18 Op 2 . + CDS 29404 - 29712 529 ## PROTEIN SUPPORTED gi|229552772|ref|ZP_04441497.1| ribosomal protein S14 + Term 29794 - 29840 11.4 + Prom 29786 - 29845 5.8 31 19 Op 1 42/0.000 + CDS 30052 - 30795 220 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 32 19 Op 2 12/0.000 + CDS 30792 - 31685 816 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 33 19 Op 3 . + CDS 31682 - 32623 1034 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 32650 - 32707 4.3 - Term 32638 - 32695 4.3 34 20 Tu 1 . - CDS 32715 - 33047 424 ## COG0640 Predicted transcriptional regulators - Prom 33096 - 33155 2.7 - Term 33090 - 33150 10.6 35 21 Tu 1 . - CDS 33167 - 33808 538 ## LGG_02417 cation efflux protein - Prom 33836 - 33895 7.4 36 22 Tu 1 . - CDS 33924 - 34112 306 ## LGG_02416 hypothetical protein - Prom 34145 - 34204 4.6 + Prom 34104 - 34163 6.5 37 23 Op 1 1/0.000 + CDS 34222 - 35751 1286 ## COG2132 Putative multicopper oxidases 38 23 Op 2 . + CDS 35785 - 37155 1225 ## COG0477 Permeases of the major facilitator superfamily + Term 37161 - 37208 -0.6 - Term 37333 - 37375 8.4 39 24 Tu 1 . - CDS 37471 - 37836 371 ## LGG_02413 hypothetical protein - Prom 37859 - 37918 5.2 - Term 37977 - 38028 12.2 40 25 Tu 1 . - CDS 38125 - 40842 2015 ## COG0474 Cation transport ATPase - Prom 41076 - 41135 4.9 + Prom 41075 - 41134 6.1 41 26 Op 1 . + CDS 41242 - 42849 1467 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family 42 26 Op 2 . + CDS 42833 - 42970 157 ## LC705_02408 hypothetical protein + Term 43008 - 43051 6.0 43 27 Tu 1 . + CDS 43504 - 44247 441 ## LC705_02405 hypothetical protein + Term 44294 - 44338 6.2 + Prom 44317 - 44376 7.6 44 28 Op 1 . + CDS 44423 - 45802 1043 ## COG0114 Fumarase 45 28 Op 2 . + CDS 45852 - 46169 374 ## LGG_02405 hypothetical protein + Term 46306 - 46343 5.3 - Term 46146 - 46190 -0.5 46 29 Op 1 . - CDS 46194 - 47339 1116 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family 47 29 Op 2 . - CDS 47369 - 48103 636 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity - Prom 48149 - 48208 5.3 Predicted protein(s) >gi|225002489|gb|ACIZ01000090.1| GENE 1 74 - 295 340 73 aa, chain - ## HITS:1 COG:no KEGG:LGG_02452 NR:ns ## KEGG: LGG_02452 # Name: lhv # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 73 1 73 73 110 100.0 1e-23 MATVDPEKTLFLDEPMNKVFDWSNSEAPVRDALWDYYMEKNSRDTIKTEEEMKPVLDMSD DEVKALAEKVLKK >gi|225002489|gb|ACIZ01000090.1| GENE 2 480 - 1190 214 236 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 201 1 194 305 87 31 2e-16 MTTLVQLKQVSKVYGSGHTAVVALHPTDFTLHAGEFAAVIGPSGSGKTTLLTIIGNLQQP SDGQIVINSQDTTHFNERQRTDLRFNTFGFILQASNLIPFLTVKDQLALVDRFNHHRQHK RSMTELFNLLGISDLTTNYPSALSGGEKQRVAIARALYNDPKIILADEPTASLDTKRALQ VVALLADIAHKTKRGVIMITHDTRLLDDVDTLYEMRDGQLKQLRDRAAKKVTPNPA >gi|225002489|gb|ACIZ01000090.1| GENE 3 1192 - 2250 916 352 aa, chain - ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 350 2 357 357 239 41.0 4e-63 MFLAYKEIIHNKARYLLVMATFVLIAYLVFFLTGLATGLARNNRTAIDALPGNYVLLSKY ANKNLLSSTLSADQITKVSTKHTAVLGQVAVVAESTANNKKVNSNVFGINLNGKLKPTVT SGRLPIHHNEVLADDSVTIYGLHQGDRITLNGSSQTYRIVGLTHDRRFYTVPVFYTTLGT FRQLKFGQRQVKQASAVISTKPFKNVPTKTQSISKATLVENIPGYTAETSTFALMIGAMI GIMLLIIGIFMYILTIQKIAMYGVMRAQGIRTRAIIAALFWQILMLAVTGVAIGAGLLGL TQFILPKAMPFYANPPLFIAIAAALILMSLVGGLFSLRRILHIDPLAAIGGE >gi|225002489|gb|ACIZ01000090.1| GENE 4 2331 - 2948 491 205 aa, chain + ## HITS:1 COG:lin2558 KEGG:ns NR:ns ## COG: lin2558 COG1309 # Protein_GI_number: 16801620 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 4 197 7 201 202 75 27.0 5e-14 MTQRNDQKKATVQRILTAAQVLFMNHGYTAVTTRMIAEAADVRQPLLYHYFKTKEALYLA VVMAVSEDMASKIAHEQIDAQNFGKKVKRLGHLLTDDNMMNLQLVLHDVGNLSSKAQADV FQAWQVGLLSPLDRFFSTFDEQLAPTYRVRDVTLYFLTVLAAYLQPTVGTGRGNTFQNQL SLDRALQMFCTGVLRPEANGEGYED >gi|225002489|gb|ACIZ01000090.1| GENE 5 3230 - 3676 762 148 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598872|ref|ZP_03212283.1| 50S ribosomal protein L13 [Lactobacillus rhamnosus HN001] # 1 148 1 148 148 298 99 5e-80 MRTTFLAKPGEIERKWYVIDATDIALGRLSSVVASILRGKNKPQFTPNVDTGDNVIVINA SKLKLTGKKASDKIYYRHSQHPGGLKHEIAGDLLRDNPARLVEYSVKKMLPTKNTLGHQQ FLKLHVYAGEEHPHLAQKPEVLDISNLI >gi|225002489|gb|ACIZ01000090.1| GENE 6 3690 - 4082 664 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116495906|ref|YP_807640.1| ribosomal protein S9 [Lactobacillus casei ATCC 334] # 1 130 1 130 130 260 99 1e-68 MAQVQYAGTGRRKNSVARVRLVPGTGKITMNGKDVRDYLPYENLITDLSQPFGITETTGS YDVLVNVNGGGFSGQAGATRHGIARALLTVDPDFRGPLKKAGMLTRDPRMKERKKYGLKK ARKASQFSKR >gi|225002489|gb|ACIZ01000090.1| GENE 7 4482 - 5666 687 394 aa, chain + ## HITS:1 COG:SPy0543 KEGG:ns NR:ns ## COG: SPy0543 COG0477 # Protein_GI_number: 15674642 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 392 1 397 402 130 29.0 6e-30 MIKRMQNALPLLLGYGFSLLGDMVYIYGMNWFLVEQTHQTELLGLINGISGMVLIAANVF AGPIVDSFNRKHMMIFADLLSGLTCFMCAFLLRDVVAGKLLLILTSSVLNVSLAFNSPSA KAVVPNVIHESQIEPFNSVQNTLSSTIKVVGPLVGALLLKLHSNINGFILINGVSFVLSA LLISTIRYTEKNNHKEKLQILPKLKSGMAYVRKKETILGLLILIATINFFAEAYTLSLPY LVKVSLDLNGDWYSAVISIEAIGGIAGGLLLALFNQKSGKNGYYIDVLLLALSILIPGIF RVYPALLFAAFINGFFGTRFNAKVFTALQLITENDYLGRVFSILFIFSALLIPPADFLFG RVIPILGWNALILSAIGLALSSLLIWMRFIRKLD >gi|225002489|gb|ACIZ01000090.1| GENE 8 5890 - 7680 1170 596 aa, chain + ## HITS:1 COG:DR2404 KEGG:ns NR:ns ## COG: DR2404 COG1132 # Protein_GI_number: 15807394 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Deinococcus radiodurans # 140 587 176 626 633 173 28.0 7e-43 MGQAGNWRYVLAKFIGKYRFKFGALLGGLCLVEIVYVVGISLLPPLAVILLQTKQLNVGL TILVIFISGVIVYGIIILDLFLQQRLSILTFDFRFDYVPVFSEHIFGWDQRLIDSVAGKT VIDQAYEAIYNGANVGIGAVVDQTIILVRTGCQIAVLLVMMGTLSFWPAAVVFGLNVLQY LFQRLSNQWYFKHKESQNRITSYQNYFVRTLMKRSTGKDIRLFAMLGVFHQHFSDLIQRL VAWQRHYANITLMVNLGQRIVNVGGLALSLLILLATRNISVASLLFFITAIQTLNSNFGQ LRDAYAAVGKNLVFVDNFRKFMAFPYRHHQRKNTDHFSGSGAINVTHVDYQVNKTPILHD ANLSIAPGELIAIVGENGAGKSTLIKLLCGLYVPTAGSVVMDGQAISDWTPAAIQRRVAV EFQDDVILHFTIAENVACTTPEKIDLGRVKTVLDEVGLGTFVAGLPQGVQTFIGNELADD GIQLSGGQKEKLLFARVLYRQADFNILDEPTAALDPLSEKQFYDLIDEKLVNKTTIIVAH RLGALAVRNVKIFVMKDGTVVAAGTHHWLLENSADYRALWEAQRSMYVGGGDHETA >gi|225002489|gb|ACIZ01000090.1| GENE 9 7667 - 9502 166 611 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 363 584 132 351 398 68 28 7e-11 MKQLKDQLQEALATGRLIARFGKSLFVLAVFTSTLNAIAPLLIILGNTQIINAILAGHLE TVPTLIGYFYGMAGGAYLMAVCIQRYLEVKTLQANEQLKLAMYEAWEQVDFQTLETQRYF AKMMKSEASFRYSGGIPVFFSQLQNLIQGVVTVIVGLGLISWLVVAGTTRSQEITAVVLV TVLTLFLGEALLIHVYQSLTRTSFKLFKDLMGLERKMNYFLMNVVNAYEGLKSIKMWGLG TPIQQRYRATWTEEKTANHKLVVNDSGSQMITALMAAFATMALFLLIVFKIYRGLLPVGQ LNTLFGSVVQMTSAASLIVATWQRFLRFENQMGYVNEILTTNGQTTTPTSETPPVQRQNT IVFDHVSFAYPDGEEVLHDISFTLDLTGVTALIGVNGSGKTTLVKLLLGLYQPTAGKILF NGHDIAEISAAAYLGLFKVVFQDYAIFDFTIAENITSSTQPDTDRLAQVMAANGIDSLVA HLPKQAATEIGSYQQDNFQPSGGQRQQLAVARAQYKRGIYQILDEPSAAMDPLKELALFT KIKRLSKETPSLFITHRIGAVTLANQIILLKAGRIDDIGTREELLQRSAYFRELWQSQAE LYGDVHVLRDR >gi|225002489|gb|ACIZ01000090.1| GENE 10 9599 - 9814 213 71 aa, chain + ## HITS:1 COG:no KEGG:LC705_02445 NR:ns ## KEGG: LC705_02445 # Name: not_defined # Def: growth regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 71 1 71 71 137 100.0 9e-32 MDVKVVKRGNSLALSLPSSAGFKRGEAFLLISDEKGGYLLIPKVKNPYTKAKPLSFHQEE AWPDFDYEDIE >gi|225002489|gb|ACIZ01000090.1| GENE 11 9814 - 10161 281 115 aa, chain + ## HITS:1 COG:BH3721 KEGG:ns NR:ns ## COG: BH3721 COG2337 # Protein_GI_number: 15616283 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus halodurans # 7 80 6 80 109 60 40.0 7e-10 MTYKAKQGDVVWLDFDPSEGHEIRKRCPAVVLSSNAYNRATGFVIVAPITSTIRTLPGYV DIVSNKIRGQVVTSQVYSLDVTEQGNRKIDFIERMNIEDFYTVAQFTKMNFDFKF >gi|225002489|gb|ACIZ01000090.1| GENE 12 11007 - 11675 642 222 aa, chain + ## HITS:1 COG:L36841 KEGG:ns NR:ns ## COG: L36841 COG3382 # Protein_GI_number: 15674160 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 3 221 4 223 235 81 27.0 1e-15 MNFIIDPKVLALGVKIRGVELTGIDNHHYPQALKQAISTEIATVLETLNRDQIKQDPIIQ GFWDLHRAVHLPKRNNTPAPATLLKLILKRGELVPINPVVDLYNLISIQSHLALGAHDIE HIDGNVNLRLTDGTERFVPIGADDQPEPVKAGEYAYVDDSNEIICHLETRQVEKTKVTPE TTHLYYIAQGNENTSQALVDQTAQRVIDLTTKYLGGQGKLLN >gi|225002489|gb|ACIZ01000090.1| GENE 13 11916 - 12734 772 272 aa, chain + ## HITS:1 COG:PA3443 KEGG:ns NR:ns ## COG: PA3443 COG0600 # Protein_GI_number: 15598639 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Pseudomonas aeruginosa # 23 264 10 251 262 263 57.0 4e-70 MQEVTTLTQEPKKRVKPSVNWLKILPWLVPLAFLMSWQAAVSFNWVTSSLIPAPSTVIQD GISLWQSGELPKNIAISLYRATAGFAIGGSVGFALGLINGLVKPIRALLDSPIQMLRNIP HLSLIPLMIILMGIGEPAKIALVAIGVMFPMYINTYQGIVGADPELLEMGRAYGLSRRAL FTRVVFPGALANILMGVRYALGVMWTTLIVAETISATSGLGYMATNAQELMRMDTVLLCI LIYALLGKLSDMIAKSLERLFLGWRQGGTEND >gi|225002489|gb|ACIZ01000090.1| GENE 14 12727 - 13428 292 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 203 1 220 245 117 32 2e-25 MTNPIVKLQHIEKVYGDKTVLHDIQLNLYPGEFLALVGMSGGGKSTILRLIAGLEAPTAG KLTRANDLVMRVMFQNDRLLPWLTNLDNVSFKNHDPAVVKEAKSLLKAVGLADKSDGYPA QLSGGQKQRLALARALLAKPQLLLLDEPLGALDALTRQRMQDLILHIFTTQKLSTMLITH DVNEAARMADRIIVVKDGQLVAETAGARGESPEVIAQTAARVLKAILAEPVTV >gi|225002489|gb|ACIZ01000090.1| GENE 15 13425 - 14666 795 413 aa, chain + ## HITS:1 COG:no KEGG:LC705_02437 NR:ns ## KEGG: LC705_02437 # Name: not_defined # Def: acyltransferase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 413 1 413 413 712 100.0 0 MKQVQATANATTAKPTKHRYLYEIDLMRLIFIAGVLLNHTTTAFQHQMSSGFASTALLAT HLMIHFTRMGFMFMTGLVLTMVYYSRQRNWPRFFKKRFTTVGVPYVLWNTILMISAVLLG IGGFTVANFWPDYLSALLHGDQFYLYYVLVTLQLYLLFPAMLWLFKRTEKHHGALLLASF TLQLLIVAGIKYGLPHVDTSHWLWWFRAYGVNVVTYQFFFIAGGLFSLHAQAVKTWLMSH QRLIGWSTLFLSLGTVGLYGFNKQILGLTHSAAVSPHQPYMLVYDVVMIAFVAILGQKYA SWHAKQPTHWIARLVGHGAQVSFGVYLCQTIAITLLGGVLGLVHLSNLMLMLLLPLGYLS ILGISFAIAWFCYKVSPFGWLIGRPQSLLLATKGVLNHEQTHRSVISESHQSS >gi|225002489|gb|ACIZ01000090.1| GENE 16 14617 - 16149 1205 510 aa, chain + ## HITS:1 COG:SPCC1827.03c KEGG:ns NR:ns ## COG: SPCC1827.03c COG0318 # Protein_GI_number: 19076049 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Schizosaccharomyces pombe # 34 494 32 497 512 233 35.0 7e-61 MSKLTDQLSQNLINHRDYPLVKSVEANTWYTGRDLEEDVAALRDQFAEQKIGAGDQVLIA LPNSPVFLPLNQALWEIGAVAHPIAAKTPLPELLAEWETYHYQAVITLPAVGKSLEAPLV PWEKVQLHTISELAILTDASQLAYRINAPQARPQEDDLALILNTSGTTGKPKRVGLTHRM LLNAALHDAKSHELSPDDTAMVVMPMFHINAQVISVLATRLSGGKLVIAPKFSASGFWPT IETNHVTWVSVVPTIISILLMNQQALAAYHSNIHLRFVRSSSFALPEDKLVAFQSHFHTQ VLEGYGMTETASQSTLNPIHAPKIGSAGKPVGTELRIKLADGTFTKKPFVEGEIVLRGDH VIHDYLEPHPESFENGWFLTGDLGYLDQDGYLFVKGRRKEMINRGGEKVAPAKVENVLNE LDWVAQVAVIGLPDNLYGEAVTAVVIRQDATEDPQKAKLDLLNFARRHLAAYECPTEVVF VKAFPVNATGKVLRPKLRKQLMQGGKLYEA >gi|225002489|gb|ACIZ01000090.1| GENE 17 16139 - 17113 1030 324 aa, chain + ## HITS:1 COG:PA3445 KEGG:ns NR:ns ## COG: PA3445 COG0715 # Protein_GI_number: 15598641 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Pseudomonas aeruginosa # 23 319 20 311 323 178 34.0 1e-44 MKRKLRLVLLLVGLVAWLSVAVYGYTQTTTASSNLETVTIGYQKADPVDIARQRGELAKK LKAKGYQVEFKEFSDGAALMTALKSGAIDYARVGDTPPVTAKATGTDIALIAAGATKEYG SGILVGKNSGITSLEQLKGKTIAYQKGTAAQYLIIQALKKAGLSTSDVKLVNMDQSSASV AFAKGSVDAWVTWDPYTSTAQVNQGAKLLTNGTGLTKNRDFLISTQSYAKTHTSLSKLLT TELNDDMTWANSHHTQLIAMLSKTLNLSDEVIKKMVERRTYSMTLISANSSIVAEENAIA DVFYQDGVITTKVDMKTTLVSDSN >gi|225002489|gb|ACIZ01000090.1| GENE 18 17320 - 20043 1736 907 aa, chain - ## HITS:1 COG:no KEGG:LC705_02433 NR:ns ## KEGG: LC705_02433 # Name: not_defined # Def: alpha-L-rhamnosidase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 907 1 907 907 1848 100.0 0 MPNITPSLLAPDHLRVNLQHFAYNVQTQPHFSWWNHSNRTGASQSAYQLTVFQRLQDRQD HKYLYDSGWVTSSNNTAVTAAKLSDQLVAGQLYYWQVRIKDNAGNISDFSQPAKLICADP SLPVKHGIWRQPQPKTAQELAHIGQVVFLRSPQLKINLSEVDTAVIVAVARGNEPVFAQS FDLYLNGHCLGVGSARQQEHDHGTEKTAIYYNVYEATDFLQDGANTVAALATASSDRQAF WCQLILYKHDGTKEVATTTDNTWRALDGSSAFGDYGVKIRTQYFGMVSENIDMRYYPQNW TSSAFDDHNWPLAWQNPHQMIADNEVLVPFRSENTERVEVHDRNKRVLTFSDQNYLLDLG KEIIGGLKVNLFSAFDQRVTVMMGEQLNEDGHVRHEMACGPDYIENWTLVKGQNQFTTLQ MKNFRYVELLGFEGDLPLDAINGWALQQAFPDNESQFDSDSELLNREYELSKYTIKATNQ DVFVDSQARERRPYEGDLLVNANTSYSVSSNYSLARHSLDYLIDNPTWPEDYKLFAIEMA WLDYLYTGDDDLLQTRYTDLQYKLNRGKSAESFDGASQSFTGSLKNSQGVDNFDAAVGLV TNDGLVDWPISERDGFVEGTYNTPFNAIFHGAYATMAKIARVLHHPDDADRYQKRAEIIK TNLIDKLYDPQTGRFFDSLTADLSVNRHTSHHASAYALCYGVYTDQNMADRLSHFVANNG HFVGSIYFIYFMLKGLFEAGHAADAITLLTDPDNHKDHKSFAAILDSLKATIAPEAWSNA YKPNLTLSHPWGATPGLTIVQGVFGIVPLAPGFTTFRVKVRPGNLKHLDLTTPSVKGLIT LHYRHEPTHQMLDVTVPMNTTAQVELPDDAQAIVVHDQYGKDWTASIEHDHDTLTIPMGR YQIQYQA >gi|225002489|gb|ACIZ01000090.1| GENE 19 20681 - 22195 1256 504 aa, chain + ## HITS:1 COG:YPO1226 KEGG:ns NR:ns ## COG: YPO1226 COG2211 # Protein_GI_number: 16121514 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Yersinia pestis # 11 501 1 480 498 352 38.0 1e-96 MKRKVRWRNVIGYGAADLFGNGALTVASTWMLFFYTSFGGLSPVLGGTILAIARVADSFI SPLMGYLTDHFGATKLGRKFGRRRFFLLISIPLMFIYVIIWISHMGFWFYLFTYLLMEAF TALVMIPYETLAAEMTDDYDMKSRLSSSRMLWSALATFLASWLPGRVFAIMGKNNPNAFL TIGIILAIVFILAIGLTYFSTFERETDGTPEERKAIIEESSHKGENPLVSLWNMIKDMGS VFRIKSFALHLVIYLSSFTARDIVGATYVFYIVYAMQSNPTEASNILTFGSIIGIPCNLV WPKIMSKLGPSKLLRIMYAMMFFTVACYAGLYYGQAAATSWGIMTLYALQVTWGISNSGT GYVPWTVYTFIPDVDEMVTKQRREGIFAGIMTFARKTTSALAPFLTGIVLSAFGFNEGAK TQSAAAINGLIIWMLVGTTLMLLLAFVTSYFFKLDRENHKILRDEIDRLKAGGKMADVDP AVKAKVEDLTGFGYDQLWGHNNIV >gi|225002489|gb|ACIZ01000090.1| GENE 20 22699 - 23109 165 136 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15903216|ref|NP_358766.1| CrcB protein [Streptococcus pneumoniae R6] # 13 127 9 124 124 68 38 9e-11 MQQREQVRLSWVLAVFVGGFFGGVMRYGLSSVTMDGQTMVGTTIVNLLGSFLLAFTTYGL DMRFDLPEWLLLGIGTGVIGGFTTFSTLMLDFVNLVATHAVYAFVLLSLNLIGGLLAAAG GFFVAKWLPRKDKSSW >gi|225002489|gb|ACIZ01000090.1| GENE 21 23103 - 23453 192 116 aa, chain + ## HITS:1 COG:CC1981 KEGG:ns NR:ns ## COG: CC1981 COG0239 # Protein_GI_number: 16126224 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Caulobacter vibrioides # 2 113 4 122 127 58 40.0 2e-09 MVILVGIGAGVGAVCRYLLTVLGRMLWPGKPVATMMINVLGAFLAGFLAGLPAFSAFRVL LLTGFCGGFTTFSTFMADAFILIRNRQWRVFVGYFLGSVLLGVVAMVAGLRVSLLI >gi|225002489|gb|ACIZ01000090.1| GENE 22 23744 - 24169 324 141 aa, chain - ## HITS:1 COG:no KEGG:LC705_02429 NR:ns ## KEGG: LC705_02429 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 17 141 1 125 125 116 99.0 3e-25 MVPSGATAALEVEEPEVLDDAVAPALEADELEALEDAELPVLEADELDALEEAELPILEA DELEALEDAELPALAAAYVAAAELEPALAVFCTAAELATVLSALPVAVAPALTEELLLLM PAIHFADFAGLQVPFDLHFHF >gi|225002489|gb|ACIZ01000090.1| GENE 23 24150 - 24338 60 62 aa, chain + ## HITS:1 COG:no KEGG:LCABL_26070 NR:ns ## KEGG: LCABL_26070 # Name: not_defined # Def: possible cell surface protein # Organism: L.casei_BL23 # Pathway: not_defined # 3 62 738 797 797 82 68.0 5e-15 MAPLGTTQSTNPQPMSRMVQKNGKHAYPATGEGQTGLLLAEAGAAIIAALGFAGVRKARH AK >gi|225002489|gb|ACIZ01000090.1| GENE 24 24980 - 25129 124 49 aa, chain - ## HITS:1 COG:no KEGG:LC705_02427 NR:ns ## KEGG: LC705_02427 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 49 1 49 49 82 100.0 6e-15 MSLFKHTFKRVEHLIAAPRDPHEEEQARLQEDLFYTNLSSLQPKTNARF >gi|225002489|gb|ACIZ01000090.1| GENE 25 25324 - 26226 901 300 aa, chain - ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 2 290 1 291 302 124 30.0 3e-28 MLKRLLTVISLLLLTTVVTACNTNTKSSGNHEKIQVVATVDFYGEVAKAVGGKQVQVTSI IDNPAIDPHDYEPTTQVGKQVATADLIIANGIGYDGWMDKLIKSENKSKQYLRVADDLMA KHEGDNEHIWYDPRTMPKLANALASKFAKEKPAKKAIFKANAKKYIASLNSLNALITKLK QNAHGQKVDVSEPVFGYALNYLGYKVNNRHFAQATEEGTDYSAKDIHAIETDIKEKKIAF FVNNSQASSKTIDSFIKLAKENKVPVLNVTETLPKGKNYRTWMTDQYRQLEKIQNQTDTK >gi|225002489|gb|ACIZ01000090.1| GENE 26 26669 - 27076 302 135 aa, chain + ## HITS:1 COG:no KEGG:LC705_02425 NR:ns ## KEGG: LC705_02425 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 135 35 169 169 220 100.0 9e-57 MIKTNHYTKNDLQKRYTRISDIVMKTMTKVSLQSDSKEISKTAKKGLGQLDDIRLELANN KTEDGLTKALTDYNKLGSELLTSAINNDAKTYQANGQGFFKQAVSVGEKYFGDQIPQSIR NFANNQQAVTTESSK >gi|225002489|gb|ACIZ01000090.1| GENE 27 27204 - 27845 511 213 aa, chain - ## HITS:1 COG:ECs1906 KEGG:ns NR:ns ## COG: ECs1906 COG0702 # Protein_GI_number: 15831160 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 212 9 219 220 195 47.0 6e-50 MANVMILGAHGQIATLVRHRLLKETQHHLNLFLRHAKRITDVDRQRETVYDGDVTDTDKL TKAMSGSDLVYANLGNSGIEDQAKSVVKAMDANHIKRLIWISTLGIYDEVPGAFGRWNHK MLDGGYLETYAAAAKVIENSDLAYTIIRPAWLSNKAIVSYELTQKGEPFKGTEVSRSSIA DLVVNLINHPHQHIGESLGVDQPHTQGDKPSFY >gi|225002489|gb|ACIZ01000090.1| GENE 28 28124 - 29041 668 305 aa, chain - ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 25 293 19 291 302 121 30.0 2e-27 MMKRLLAGISVALLAVFAVACGNNGAAKQSSASNDKIQVVASVDFYGEVAKAVGGDKVAV QSVINNPAVDPHDYEPTTKVGKAVATSDFVIASGIGYDGWMDKVVKSENKSKSYLRVADD LMNKKEGDNEHIWYDPRTMPKLANALADKFAKKDPANKAKFKANAKKYIASLDDLNALVN KLKSNANGQLVDVSEPVFGYALDYLGYKINDAHFSNSTEEGTDYSAKDIHGIETDIKEKK IAFFVNNIQATSKTVSRLVKLAKQNNVPVLNVTETLPKGKNYRTWMMSQYQQLEKIQNQA TTSSK >gi|225002489|gb|ACIZ01000090.1| GENE 29 29239 - 29358 109 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEKTDLASARRRMKSPNIKTRKRALKILHDTKRKQQKSR >gi|225002489|gb|ACIZ01000090.1| GENE 30 29404 - 29712 529 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229552772|ref|ZP_04441497.1| ribosomal protein S14 [Lactobacillus rhamnosus LMS2-1] # 1 102 1 102 102 208 100 6e-53 MRWLVTFYRKRKLMAKKSKIAKAKRQEKLVQQYAAKRAELKAKGDYIGLSKLPRDSSPVR LHHRDALDGRPHAYMRKFGISRLNFRELAHKGQIPGVRKASW >gi|225002489|gb|ACIZ01000090.1| GENE 31 30052 - 30795 220 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 221 1 227 245 89 26 4e-17 MLTVKNLTVAYADTPVFADVAVHFNAGKITGIIGPNGAGKSTLIKAILGLIKVQSGKVDF SGHTLKEVQQAIAYVEQRKDLDLTFPINVLDLVLTGTYGRLGLLKSPGKKERQAALEALE QVGLADFTKRQISQLSGGQLQRVFVARAIVQQADIMILDEPFVGIDMKSEQEIMAILNQW RDAGKTLIVVHHDLNKVSNYFDELVVMNHGIIAEGPVEEVYTAQNIERAFSADLSNVLFA TKEGASV >gi|225002489|gb|ACIZ01000090.1| GENE 32 30792 - 31685 816 297 aa, chain + ## HITS:1 COG:lin1962 KEGG:ns NR:ns ## COG: lin1962 COG1108 # Protein_GI_number: 16801028 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Listeria innocua # 7 281 3 277 280 248 62.0 1e-65 MSSLAEFFTALGKYDFLQSALITAIMVGIMSGLIGSFIILRGMSLMGDAISHAVLPGVAV AYMLGVNVMIGASVFGIIAALLIGFVAANSKIKTDTSIGVVFSAFYALGFILISMAESAT NLHHILFGNILAVSDSDIMTTAVVLGIVILFVVLFYKELLITSFDNTFAKTYGLNTTAIH YALMLVLTLVTVSALQTVGIILVVAMLITPAATAFLWTDRLETMLVMAASVGVISSITGL YFSFTFNWASGPAIVLVAAVLFAISFVFSPKQAFFSFSKRQRTKTAATTQTAEEVIR >gi|225002489|gb|ACIZ01000090.1| GENE 33 31682 - 32623 1034 313 aa, chain + ## HITS:1 COG:L148957 KEGG:ns NR:ns ## COG: L148957 COG0803 # Protein_GI_number: 15673298 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Lactococcus lactis # 2 312 6 312 313 313 52.0 4e-85 MKKILITVGALIVMIGGVFWFINSRSTAQKDSASTNQTLRVVTTNSILEDMVQNVGGERI KLYSIVKRGTDPHEYEPRPTDVAATSEADVVFHNGLNLETGGNGWFKKLVKTSHKEFDKD VFAASKGVTAQHLTTNTKEQDPHAWLDLANGIQYVKTITKVLKQKDAKNAAYYQKNSDRY VAKLQKLHETALSRFLDIPEKQRVLVTSEGAFKYFSKAYHVTPAYIWEINTESQGTPEQM QTVLAKIRASEVKHLFVETSVSPKSMNKVAKETGLSIYSKIFTDSLAAKGTQGDTYYTMM KWNLDKIHDGLAG >gi|225002489|gb|ACIZ01000090.1| GENE 34 32715 - 33047 424 110 aa, chain - ## HITS:1 COG:DRA0071 KEGG:ns NR:ns ## COG: DRA0071 COG0640 # Protein_GI_number: 15807739 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Deinococcus radiodurans # 12 99 36 123 125 65 42.0 3e-11 MTATTLRLVESAKLAEAERIFKLLSNPTRLQMLKLLEQQVLNVSKLSELLGVEQSVVSHQ LALLRKHQLVSAKRVGKANYYQLDDPHIIAVIDAMLAHADHVARGKQHGQ >gi|225002489|gb|ACIZ01000090.1| GENE 35 33167 - 33808 538 213 aa, chain - ## HITS:1 COG:no KEGG:LGG_02417 NR:ns ## KEGG: LGG_02417 # Name: not_defined # Def: cation efflux protein # Organism: L.rhamnosus # Pathway: not_defined # 1 213 1 213 213 334 99.0 1e-90 MKPFVIAKNADMTTAIRVEYFSTGWMAFEFLIGFWSGFQAGSILLIAFGLDSFLEIISGA TLIWRLKKESNGASASAVARAEQRSSLVVGCVLLLLSLYVIGVSGFNLVTHAAAESSMSG IGIAIASIIVMPFLTLRKRHLGHKLNSPALIEDGMCNITCAYMAATVLIGSLLTWLFNWW WADSVAALILVYFVASEGWEALQTGLSHSENEE >gi|225002489|gb|ACIZ01000090.1| GENE 36 33924 - 34112 306 62 aa, chain - ## HITS:1 COG:no KEGG:LGG_02416 NR:ns ## KEGG: LGG_02416 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 62 3 64 64 63 100.0 2e-09 MMSKSMGWLMLALNVVLLVLIATMHNMAAMWLMGIIMSLDAISGLVNAYQADHETHHHAT QH >gi|225002489|gb|ACIZ01000090.1| GENE 37 34222 - 35751 1286 509 aa, chain + ## HITS:1 COG:Cgl0921 KEGG:ns NR:ns ## COG: Cgl0921 COG2132 # Protein_GI_number: 19552171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Corynebacterium glutamicum # 32 464 44 489 513 263 37.0 8e-70 MKTYTDYFFDEPAFDLHDGGYVPLEVSDAPAKPLNVPPLLKPDKETATDVYYTVTAQAGE TQLLPGAKTKTWGYNASLLGQTIVYRRGQHVHVTLKNTLPELTTFHWHGANVSGPYVDGG CHAPVYPGESKQIDFTLDQPAATLWLHAHPCPSTAEQVWHGLAAMVIVKDQHEESLPLPR NYGVDDIPVILQDRRFHEQNQWNYRADYDPDGVAGPTAMINGTINPYFDVTTQKVRLRFL DGANRREWRLHFSDDLPFTQIGGDGSLLPEPVALTHLMLTCAERAEVIVDFGQYHEGDVV TLYTDNVPLLKFRIHTFKPDHTQLPDKLFTVKAPAVDPALPVRHVVMQGMDESVAIDGKK FAMQRIDATQPIGKAQYWDVTNSNAAPGMVHPFHVHGTQFLILSRNGHAPYPNEHGFKDT VGVNPGETVRLLVRFDLPGVYMYHCHIIEHEDGGMMAQIETFDPTKPKQEYKLMDMDTLM TALAKERGVKPSELWMGGMQSYEKMGMKM >gi|225002489|gb|ACIZ01000090.1| GENE 38 35785 - 37155 1225 456 aa, chain + ## HITS:1 COG:BS_ycnB KEGG:ns NR:ns ## COG: BS_ycnB COG0477 # Protein_GI_number: 16077452 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 8 450 11 461 472 218 35.0 2e-56 MNGTTIKHRGAFVATLLTGTFSMSISQSSLSTAYPAFMKAFGLGADTVAWLTTGFMLVMT LMIPVSPWLLHNVPFQRLFQAIELIFAVGTALCIWAPSFAVLMIGRLLEAVAVGIIFPSF QTVLLTITPHSERGKVMGTAGLVMGSALAVGPIISGVLLTWFPWQALFLFFLIVSVLVLA VSTVTIASVMPLEQTRLDWVSFILSASFPILLYALSAWSKQGLRVGVISLLIVGVLAGGI FVIRQLNRQPPMLQMRVFATGMFTKAVFLTGISYIGLIVTTILMPLYFQTLLGLSPLVSG LSLVPAAVLLSLLNPVSGRLLDRFGPRLVAMIGMVLITGGFGLLAIFARHLPLLGAIVLA MATEAGNAFVMMPSVTAGANALPNELVADGTAVTTTARQLFGSAGVMFATVLLDNMQVTL NSHAGGFAVTFAVFAGVGLVGLLLALTLPKAVEQKH >gi|225002489|gb|ACIZ01000090.1| GENE 39 37471 - 37836 371 121 aa, chain - ## HITS:1 COG:no KEGG:LGG_02413 NR:ns ## KEGG: LGG_02413 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 121 1 121 121 237 100.0 1e-61 MKLYQGLTQVQINEEFAGEANGYKITTTLEKPLNYEPAILYQYLDAVLKPGSRHDQNNLR YVTDPGFIGENYDYQSVPFTSHMTDFDEKMAFARKLVADLNRHLSVNVKPADSEIELIFV D >gi|225002489|gb|ACIZ01000090.1| GENE 40 38125 - 40842 2015 905 aa, chain - ## HITS:1 COG:Cgl1510 KEGG:ns NR:ns ## COG: Cgl1510 COG0474 # Protein_GI_number: 19552760 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Corynebacterium glutamicum # 4 885 5 887 892 654 42.0 0 MEEVPDSQPPATAHSIKDLQQMLQVPSLDHGLSKTEAAKRLEANGPNAIESHPTPKWLIF LRQFNNLIIYILIIAAILTTVIGDVTDTSVIVLVIIVNAIIGYYQESNASDSLEKIKKML APEATVYRDGERLDIPSADLVVGDVVFLEAGDNVPSDLRLVDIDNLTIQEAVLTGEANSV IKTTDILPADTPLADQSNMAFASTAVAGGSGIGIVVATGHDTEFGKISQAVSDVRKGRSP MMREIDGIGKGISYAIIAAAVLLFIFGMIIGKYSLPVLALAIVTMVVGSMPEGLPATTSV ILAMGVSNMAKKQHVIVKTLPAAETLGSVDVICTDKTGTLTKNEMTITTVITPQATYQVS GSGYTPKGQFTLAGKTIEPANHPDLTALLTAGFEANDTELHQEDGRYVINGEPTDGAFLT AYYKAFKDEPANTERDLMPFDSNNRYMAKLAKCADGHTCLFVKGSPDKLLPLVAAAHPDF DQSHYLMLTSQFSTEGQRVIAVAQKIVPDDTSEITPALLKQGLDFLGLTAIIDPPRESVI SAIKQMRRAGVKVKMITGDHPETALAIAKKLGMADSPTAVTGTQLAALPEEKQRQMILNA DVFARTTPKDKLTIVSVLQDAGNVTAMVGDGVNDAPALKKSDVGVAMGQSGTDVAKDAAD MVLTDDRFARMETAIAQGRRIYQNIKKSILFLLPTSFAEGLVIVFTILTQQAMPLRASQL LWINMVSAITIQFAFIFEPAEAGTMERPPRKKNASMMHKHDVFQIAYVAMMIAGIGLWAF DWLTANHLTDRVTASTMMVNMIVLGKIFYLFNIRTNTLALSKNLFSNPMAFAIIGIMLAL QCFLTYVPFMQEIFQTASMSWREWGIAVLAGSVILIVTEIDKIIRLRWQRLHGHDAFQST TKISK >gi|225002489|gb|ACIZ01000090.1| GENE 41 41242 - 42849 1467 535 aa, chain + ## HITS:1 COG:L91569 KEGG:ns NR:ns ## COG: L91569 COG1914 # Protein_GI_number: 15673064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Lactococcus lactis # 1 308 1 306 314 449 77.0 1e-126 MSDDHKKKHSMKLIQYANGPSLEEINGTVEVPHGKGFWRTLFAYSGPGALVAVGYMDPGN WSTSITGGQNFQYLLISVILMSSLIAMLLQYMAAKLGILSQMDLAQAIRARTSKKLGIVL WILTELAIMATDIAEVIGAAIALYLLFHIPLVIAVLVTVLDVLVLLLLTKIGFRKIEAIV VALILVILLVFVYQVALSDPNMGALLKGFIPTGETFASSPSVNGMSPIQGALGIIGATVM PHNLYLHSAISQTRKIDHKDPEDVAQAVKFSAWDSNIQLTFAFVVNCLLLVMGVAVFKSG AVKDPSFFGLFQALSDSSTLSNGVLIAVAKSGILSILFAVALLASGQNSTITGTLTGQVI MEGFIHMKMPLWARRLVTRVISVIPVIVCVMLTARETPIQQHEALNTLMNNSQVFLAFAL PFSMLPLLMFTNSKVEMGDRFKNTGWVKVLGWVSVIGLTYLNLKGLPDSIAGFFGDNPTA AQTNIANMIAYVLIAAVLALLAWTIWDLYKGNKRYEAHLEAVADEEEAKANDDVQ >gi|225002489|gb|ACIZ01000090.1| GENE 42 42833 - 42970 157 45 aa, chain + ## HITS:1 COG:no KEGG:LC705_02408 NR:ns ## KEGG: LC705_02408 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 45 8 52 52 89 100.0 5e-17 MMTYNSLVASLVMSCDGIEESEGYDPWLFAILGLENEQSKVRQNK >gi|225002489|gb|ACIZ01000090.1| GENE 43 43504 - 44247 441 247 aa, chain + ## HITS:1 COG:no KEGG:LC705_02405 NR:ns ## KEGG: LC705_02405 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 247 1 247 247 474 99.0 1e-132 MAHLSEVMTQAVPTETATGLSQHATDLLIGLMYADRLDSESNTKKRKIFRGGRPFFERYG QIAGVEHRGKLKKARRELELNGALDCAQPGDKSYQLTQTPWQIFKQFNGMMASPVQVSRT YDVKSFSELLKRSSLAHKNFPLNTEGAVMLQTDTFGSEQPLMYAVSPATYHRLTKAEARM KTTVPDTRQRLVNVQAWSIDPALISGWLHAGLPTPQADPIHQYLAALSSSSLQFQKEAAR LVAAMLY >gi|225002489|gb|ACIZ01000090.1| GENE 44 44423 - 45802 1043 459 aa, chain + ## HITS:1 COG:lin2328 KEGG:ns NR:ns ## COG: lin2328 COG0114 # Protein_GI_number: 16801392 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Listeria innocua # 6 459 3 455 455 472 57.0 1e-133 MTTNTRIESDTLGPVEIPETALWGPQTERSRHNFQAGPLMPLPLIKALLQIKKAAARANV AADILPAPKGQLITRAVDTLLALPDEKLQADFPLHVYQTGSGTQTNMNVNEVVSHQAAKL NPDLPILPNDDVNHSQSSNDTFPTAMNITAAIAVNHLLAAVDGLIAALQTKAKQYDHTVK IGRTHLQDATPLTFGQEVSGWIAMLAHDRTAIEQLQPALFRLAIGGTAVGTGLNAAPNFG RIVAGRLSDVYHLPLTAQTNKFAALAAHSEISNVHGGIKTLAADLLKIANDIRFLASGPR AGYGELRIPANEPGSSIMPGKVNPTQAEALTMATVRVMGNDTTITVAASQGNFELNVYKP VIISTFLESTTLLTQTITSFTQKLVADLTVNAPRMQALVAHSLMTVTALTPHIGYEKSAA IAQLAERTGTDLKDAAIQTGYVTEAEFDAWVDPAKMTGI >gi|225002489|gb|ACIZ01000090.1| GENE 45 45852 - 46169 374 105 aa, chain + ## HITS:1 COG:no KEGG:LGG_02405 NR:ns ## KEGG: LGG_02405 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 105 1 105 105 124 99.0 1e-27 MKNQKMGFFGFLIIIFIIAMLVQYWYIFVAVLVLGGAAYLYYYRRQQAIAAQAAKTAQAQ AAEQATIARLKAYKDLLDTGAITQEDYNHKKAELLRLDSHEELKF >gi|225002489|gb|ACIZ01000090.1| GENE 46 46194 - 47339 1116 381 aa, chain - ## HITS:1 COG:BS_yqiG KEGG:ns NR:ns ## COG: BS_yqiG COG1902 # Protein_GI_number: 16079477 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Bacillus subtilis # 6 347 8 347 372 280 44.0 5e-75 MSDYTFLKPFTFKNQPITLKNRIVIPPMTTRLSFEDGTVTQDEIEYYQKRAGGVGLFITG TANVNPLGKGFEGELSVADDRFIPGLSRLATAMKTGGSKAVLQIFSAGRMSNSKILRGQQ PVSASAVAAPRSGYETPRALTTEEIKATIHDFGQAVRRAIEAGFDGVELHGANTYLIQQF YSPHSNRRTDEWGGTRDKRMRFPLAVVHEAEKVIAETADRPFLLGYRISPEELEQPGITL DDTLALIDALKATKIDYLHVSQSDVWRTSLRDPDNPAIINDVIRDHVAGALPIIVVGGIK TPEEAEKAAAAFDLVAIGHEMIREPHWVQKILAHDEKAIRYQIAPEDLDELGIAPTFLDF IESISGGAKGVPLTTATNDEH >gi|225002489|gb|ACIZ01000090.1| GENE 47 47369 - 48103 636 244 aa, chain - ## HITS:1 COG:XF1744 KEGG:ns NR:ns ## COG: XF1744 COG4221 # Protein_GI_number: 15838345 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Xylella fastidiosa 9a5c # 3 242 2 245 247 221 50.0 8e-58 MTVKDKVVVITGASSGIGAATTQVLAQAGAKLVIGARREDRLAKLAEPFGNDQIRYQATD VTNQDQVKSLVDLAIKTFGHVDVLFNNAGLMPLSEMAELKVNEWERMVDVNIKGVLYGIA AVLPHMIERHSGQIITTDSVAGHIVHPGTAVYSGTKWAIQAIMDGLRQEQAANHIKTTMI SPGAVNTELFSTISDPKRRAAVEADEKNNGLTATDVANAVLYAIDQPDNVAVNEVLLRPV TQQR Prediction of potential genes in microbial genomes Time: Wed May 25 20:07:02 2011 Seq name: gi|225002488|gb|ACIZ01000091.1| Lactobacillus rhamnosus LMS2-1 contig00099, whole genome shotgun sequence Length of sequence - 67045 bp Number of predicted genes - 64, with homology - 64 Number of transcription units - 39, operones - 16 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 179 - 1132 904 ## COG4989 Predicted oxidoreductase + Prom 1216 - 1275 3.2 2 2 Tu 1 . + CDS 1303 - 1644 536 ## LC705_02398 prebacteriocin + Term 1736 - 1769 1.2 + Prom 1814 - 1873 3.5 3 3 Tu 1 . + CDS 1935 - 2267 413 ## LC705_02397 hypothetical protein + Term 2330 - 2374 1.3 + Prom 2359 - 2418 3.5 4 4 Op 1 3/0.000 + CDS 2440 - 3867 1363 ## COG0477 Permeases of the major facilitator superfamily 5 4 Op 2 . + CDS 3922 - 4362 495 ## COG1959 Predicted transcriptional regulator + Term 4384 - 4443 16.2 + Prom 4505 - 4564 2.5 6 5 Op 1 . + CDS 4683 - 5489 454 ## LC705_02393 immunity protein PlnI, membrane-bound protease CAAX family 7 5 Op 2 . + CDS 5539 - 5724 217 ## LC705_02392 hypothetical protein + Prom 5897 - 5956 2.8 8 6 Op 1 . + CDS 6110 - 6295 217 ## LC705_02391 hypothetical protein 9 6 Op 2 . + CDS 6355 - 6540 289 ## LC705_02390 bacteriocin-type signal sequence beta subunit-containing protein 10 6 Op 3 . + CDS 6598 - 6768 173 ## gi|229552801|ref|ZP_04441526.1| hypothetical protein HMPREF0539_2058 11 7 Tu 1 . + CDS 7009 - 7167 282 ## LC705_02389 bacteriocin-type signal sequence alpha subunit-containing protein 12 8 Tu 1 . + CDS 7346 - 7645 147 ## LC705_02388 immunity protein + Term 7662 - 7709 -0.8 + Prom 8946 - 9005 2.7 13 9 Tu 1 . + CDS 9113 - 9373 122 ## LC705_02387 hypothetical protein + Term 9402 - 9443 8.1 - Term 9382 - 9437 10.1 14 10 Op 1 9/0.000 - CDS 9493 - 10269 260 ## COG3279 Response regulator of the LytR/AlgR family 15 10 Op 2 . - CDS 10262 - 10996 215 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 16 10 Op 3 . - CDS 11046 - 11576 273 ## LGG_02387 two component sensor transduction histidine kinase, bacteriocin - Prom 11684 - 11743 2.7 + Prom 11532 - 11591 5.5 17 11 Tu 1 . + CDS 11752 - 11886 157 ## gi|229552811|ref|ZP_04441536.1| hypothetical protein HMPREF0539_2068 + Prom 11938 - 11997 9.8 18 12 Op 1 . + CDS 12135 - 14327 207 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 19 12 Op 2 . + CDS 14340 - 15719 1098 ## LGG_02385 bacteriocin ABC transporter permease 20 13 Tu 1 . + CDS 15837 - 16190 248 ## LGG_02384 hypothetical protein + Prom 16251 - 16310 5.0 21 14 Tu 1 . + CDS 16370 - 17725 1058 ## COG3610 Uncharacterized conserved protein + Term 17755 - 17789 4.3 - Term 17743 - 17777 1.1 22 15 Tu 1 . - CDS 18025 - 19002 870 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 19248 - 19307 4.5 + Prom 18979 - 19038 3.0 23 16 Tu 1 . + CDS 19235 - 19525 284 ## LC705_02377 prebacteriocin - Term 19361 - 19397 -1.0 24 17 Op 1 . - CDS 19553 - 20329 474 ## LC705_02376 hypothetical protein 25 17 Op 2 . - CDS 20373 - 21158 564 ## LC705_02375 hypothetical protein 26 17 Op 3 . - CDS 21155 - 21487 173 ## PROTEIN SUPPORTED gi|42783874|ref|NP_981121.1| 30S ribosomal protein S14 homolog-related - Prom 21514 - 21573 6.0 - Term 21559 - 21591 -1.0 27 18 Tu 1 . - CDS 21618 - 22265 473 ## COG1396 Predicted transcriptional regulators - Prom 22301 - 22360 2.4 - Term 22449 - 22502 5.4 28 19 Tu 1 . - CDS 22559 - 23614 521 ## LC705_02372 hypothetical protein + Prom 23689 - 23748 9.9 29 20 Op 1 . + CDS 23807 - 25015 1026 ## COG3410 Uncharacterized conserved protein + Prom 25095 - 25154 8.2 30 20 Op 2 . + CDS 25184 - 25741 588 ## LGG_02373 hypothetical protein + Term 25773 - 25827 12.1 + Prom 25873 - 25932 7.7 31 21 Op 1 . + CDS 26037 - 28967 2138 ## COG4932 Predicted outer membrane protein 32 21 Op 2 . + CDS 28969 - 30324 1085 ## LC705_02368 pilus specific minor backbone protein 33 21 Op 3 . + CDS 30315 - 31868 1463 ## LC705_02367 pilus specific major backbone protein 34 21 Op 4 . + CDS 31875 - 32699 529 ## COG3764 Sortase (surface protein transpeptidase) + Term 32722 - 32786 14.3 + Prom 33013 - 33072 6.6 35 22 Op 1 . + CDS 33295 - 34020 450 ## LC705_02365 hypothetical protein 36 22 Op 2 36/0.000 + CDS 34017 - 34685 347 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 37 22 Op 3 . + CDS 34696 - 35865 445 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Prom 36680 - 36739 4.0 38 23 Tu 1 . + CDS 36886 - 37428 341 ## LC705_02362 hypothetical protein 39 24 Tu 1 . + CDS 37998 - 38183 152 ## LGG_02367 hypothetical protein + Prom 38360 - 38419 3.6 40 25 Op 1 22/0.000 + CDS 38632 - 39468 716 ## COG0263 Glutamate 5-kinase 41 25 Op 2 . + CDS 39549 - 40805 1132 ## COG0014 Gamma-glutamyl phosphate reductase + Term 40824 - 40875 12.2 - Term 40812 - 40863 12.6 42 26 Tu 1 . - CDS 40874 - 42106 758 ## COG0477 Permeases of the major facilitator superfamily - Prom 42206 - 42265 4.7 43 27 Tu 1 . + CDS 42676 - 42930 260 ## LC705_02357 hypothetical protein + Prom 43010 - 43069 3.2 44 28 Op 1 . + CDS 43130 - 43336 217 ## LGG_02361 hypothetical protein + Prom 43429 - 43488 4.4 45 28 Op 2 . + CDS 43526 - 43783 334 ## LGG_02360 hypothetical protein + Term 43810 - 43860 15.1 46 29 Tu 1 . - CDS 43983 - 45161 262 ## COG3835 Sugar diacid utilization regulator - Prom 45209 - 45268 7.6 + Prom 45112 - 45171 2.8 47 30 Op 1 . + CDS 45290 - 46507 567 ## COG0477 Permeases of the major facilitator superfamily 48 30 Op 2 . + CDS 46500 - 47243 414 ## COG2820 Uridine phosphorylase 49 30 Op 3 . + CDS 47271 - 48500 665 ## COG0477 Permeases of the major facilitator superfamily 50 30 Op 4 . + CDS 48497 - 49687 276 ## COG1015 Phosphopentomutase + Prom 49730 - 49789 4.2 51 31 Tu 1 . + CDS 49815 - 50024 390 ## LGG_02357 CsbD-like superfamily protein + Term 50059 - 50098 3.1 + Prom 50090 - 50149 7.1 52 32 Tu 1 . + CDS 50187 - 51302 1299 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 51366 - 51411 10.1 - Term 51354 - 51399 5.5 53 33 Op 1 . - CDS 51548 - 51832 356 ## LGG_02355 hypothetical protein 54 33 Op 2 . - CDS 51851 - 52969 810 ## COG4292 Predicted membrane protein - Prom 53064 - 53123 2.3 + Prom 52983 - 53042 7.2 55 34 Op 1 . + CDS 53127 - 53798 456 ## COG0588 Phosphoglycerate mutase 1 + Prom 53860 - 53919 4.8 56 34 Op 2 . + CDS 54000 - 54557 452 ## COG0517 FOG: CBS domain + Term 54585 - 54647 15.9 + Prom 54671 - 54730 5.7 57 35 Tu 1 . + CDS 54857 - 57487 2281 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Term 57576 - 57615 0.7 - Term 57550 - 57614 6.1 58 36 Tu 1 . - CDS 57707 - 59761 1953 ## COG3158 K+ transporter - Prom 59784 - 59843 5.8 59 37 Op 1 . - CDS 59913 - 60788 719 ## COG1131 ABC-type multidrug transport system, ATPase component 60 37 Op 2 . - CDS 60802 - 61995 705 ## LC705_02340 hypothetical protein 61 37 Op 3 . - CDS 61995 - 63095 702 ## LC705_02339 hypothetical protein - Prom 63138 - 63197 4.5 - Term 63235 - 63278 8.2 62 38 Op 1 . - CDS 63312 - 64658 1228 ## COG3579 Aminopeptidase C 63 38 Op 2 . - CDS 64803 - 66122 1051 ## COG3579 Aminopeptidase C - Prom 66147 - 66206 4.8 - Term 66246 - 66278 3.1 64 39 Tu 1 . - CDS 66294 - 66617 276 ## COG2388 Predicted acetyltransferase - Prom 66700 - 66759 6.0 Predicted protein(s) >gi|225002488|gb|ACIZ01000091.1| GENE 1 179 - 1132 904 317 aa, chain + ## HITS:1 COG:lin0643 KEGG:ns NR:ns ## COG: lin0643 COG4989 # Protein_GI_number: 16799718 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Listeria innocua # 1 317 1 305 305 336 51.0 3e-92 MKQVQLGGSNWKASSVALGIMRMNVLSPEKAASVLDSAYDDGIDFIDSADIYGKGKSEEV FGEALKQAKVNRDQLYIQSKIGIVVDPKRSHGSLVFGKRYDFSKEHLLSAVDSILQRLQI DYLDSVLLHRPDPLMEVDDVAAAFDELQQSGKVRHFGVSNFNPEQIALLQENLHQQLLID QVQFSVAHTGMVDAGMHTNMADDRSVDHDGSLLPYLQRKHMTLQAWSPFQYGMFEGTFID SPKFKALNDELQKVADHYHTNKNAIAVAWLLRHPVGVQVILGSMNPEHIKESAEGADITL TRQEWYDIYFAAGNDLP >gi|225002488|gb|ACIZ01000091.1| GENE 2 1303 - 1644 536 113 aa, chain + ## HITS:1 COG:no KEGG:LC705_02398 NR:ns ## KEGG: LC705_02398 # Name: not_defined # Def: prebacteriocin # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 113 1 113 113 196 100.0 3e-49 MSDKKQALFEMLSKAYSSPAVKADAKLKQIIESNAKQLEDAEDKTAYVAVVTQLSHDISK YYLIHHTIPAEMIAVFNAIKADVPADQVNAKRYRDQALAAGLIAIPIVWGGGH >gi|225002488|gb|ACIZ01000091.1| GENE 3 1935 - 2267 413 110 aa, chain + ## HITS:1 COG:no KEGG:LC705_02397 NR:ns ## KEGG: LC705_02397 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 110 1 110 110 211 100.0 9e-54 MNMVQRNQILFILTGLNLSLKQAASGGLMETEAQEVVDEALDILKRPNVLKNRAADYALS RLYARFTRLIGLQGMKLSAEANQWWQAVKDFMENDIHGELSQVGGPHFII >gi|225002488|gb|ACIZ01000091.1| GENE 4 2440 - 3867 1363 475 aa, chain + ## HITS:1 COG:L127813 KEGG:ns NR:ns ## COG: L127813 COG0477 # Protein_GI_number: 15673857 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 39 464 9 433 442 237 35.0 3e-62 MSKEEDKELINDGLADDTVIEETDAAITQSQRMSATQIIILGLALIGAFLGVLDTSIVYT GTVKMAAQLHLNAGALSWVQVAYALTYAGLMLVGGKLGDIYGRKPLFIASLAIFGVGSLA VGAATNALVMISFRAVQGVGAAILAPNCLALLTDTFQGKARQRAIGYYASVIGAGAAVGL VIGGFFATFASWRVGFYMNGPIALIMVGIAARYLPSAKRQTGKIDWIGTILSVLAMTSIS YGLDGSPWPIPTLLISAVLWVAFIASQGRVAHPTMPLEIFTDRERMASYVSSLLFSAAAI GFWFYTPQFMQGVLGLTPFMTALGMVPMAILLFIVAVKARTFVDRWRNSKVMIFGFVTVL LSLAELAVASRFANYWFLLLGTLGFAVGFALAFATLATSGLARIRPEISGAASGVYNTAR QFGGALGLAIFAASTSSLTKIADVFGQAMLIGVGMTIVGLILVVTLIIPAEKAAK >gi|225002488|gb|ACIZ01000091.1| GENE 5 3922 - 4362 495 146 aa, chain + ## HITS:1 COG:AGl1131 KEGG:ns NR:ns ## COG: AGl1131 COG1959 # Protein_GI_number: 15890683 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 29 141 38 153 191 67 38.0 1e-11 MAFSVAFSQALEITAYVNAKSQAQHEDYLSIQKISEMLNIPVPSIKKISSTLKKSGILTS KTGLNGGLRLAKTPQTITVYEILTAIEGTAPLFKLHQEIDPAAFVNGERVTSWLTASTNV LNRAEDAMVQVLKQTSIADLAEAAEA >gi|225002488|gb|ACIZ01000091.1| GENE 6 4683 - 5489 454 268 aa, chain + ## HITS:1 COG:no KEGG:LC705_02393 NR:ns ## KEGG: LC705_02393 # Name: not_defined # Def: immunity protein PlnI, membrane-bound protease CAAX family # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 268 1 268 268 435 100.0 1e-121 MERKRHLLLSPGFCVLYILLLVVLISQLLLIPAVYTLKLDFWAGNILFKAIILLVMIALN WLLLKQVIVLKVTLSRPRLKPVIIWGLLFILIAWFTVTNRTPIDVLQAAVIGTIAAVPEE YLFRGVMLGGLIRAFYVAHHRHAKYQLLFCIGLSSLVFSLAHLSNLPAQGLVITIAQVIQ AFGMGAIFAALYIRYGSLLMPILIHFLIDFVITLVSGPYPKEAPSDPNAITMTIVHAFLI AGIYLAIALRLFRRGQNNEKFLARLSHS >gi|225002488|gb|ACIZ01000091.1| GENE 7 5539 - 5724 217 61 aa, chain + ## HITS:1 COG:no KEGG:LC705_02392 NR:ns ## KEGG: LC705_02392 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 61 1 61 61 85 100.0 4e-16 MSTRLTKLVDYGLIIATIIFAIYTVTSAIGWTNHGSFVTPMLILMTLLMLLSEREEKQKS A >gi|225002488|gb|ACIZ01000091.1| GENE 8 6110 - 6295 217 61 aa, chain + ## HITS:1 COG:no KEGG:LC705_02391 NR:ns ## KEGG: LC705_02391 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 61 1 61 61 110 100.0 2e-23 MTMRTGLALKEISGKMLELTSGGNVPLSNCSVDPPNERHPPAYESAFKYKLPIVHPIKVA T >gi|225002488|gb|ACIZ01000091.1| GENE 9 6355 - 6540 289 61 aa, chain + ## HITS:1 COG:no KEGG:LC705_02390 NR:ns ## KEGG: LC705_02390 # Name: not_defined # Def: bacteriocin-type signal sequence beta subunit-containing protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 61 1 61 61 105 100.0 5e-22 MDHLKTLNTADLASISGGDNGNLWTFIGKAIGSTARSWAEGAMFAPAIGPAKEIVDKLNG N >gi|225002488|gb|ACIZ01000091.1| GENE 10 6598 - 6768 173 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229552801|ref|ZP_04441526.1| ## NR: gi|229552801|ref|ZP_04441526.1| hypothetical protein HMPREF0539_2058 [Lactobacillus rhamnosus LMS2-1] # 1 56 8 63 63 102 100.0 1e-20 MLATFILVYLLGVLVYTCCKKDGHYRVWNDKYLDSEHQIAFKRAYILNAIWFITYA >gi|225002488|gb|ACIZ01000091.1| GENE 11 7009 - 7167 282 52 aa, chain + ## HITS:1 COG:no KEGG:LC705_02389 NR:ns ## KEGG: LC705_02389 # Name: not_defined # Def: bacteriocin-type signal sequence alpha subunit-containing protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 52 1 52 52 91 100.0 9e-18 MTKLNEAELSKISGGIGPLAIPVAAILGFLATDAWSHADELVAGVKQGWERS >gi|225002488|gb|ACIZ01000091.1| GENE 12 7346 - 7645 147 99 aa, chain + ## HITS:1 COG:no KEGG:LC705_02388 NR:ns ## KEGG: LC705_02388 # Name: spiA # Def: immunity protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 99 1 99 99 147 100.0 1e-34 MKKLKWFSGGNERAEQAIQLIDELLRDFDDSSSHSDRLRTVLRNNREALIYKQAAVPFIL SRMNLEISNALLQNNILLTKQQSDKFEQLSSLANIRYGY >gi|225002488|gb|ACIZ01000091.1| GENE 13 9113 - 9373 122 86 aa, chain + ## HITS:1 COG:no KEGG:LC705_02387 NR:ns ## KEGG: LC705_02387 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 86 1 86 86 137 100.0 2e-31 MNLYYATWLIFLATLFVFKDRKFVKRMISAILDDGSLVFGIRTVIWLALLGLFFVTNHTD WPSAVLILLIVSAVILIDWHKTFQEE >gi|225002488|gb|ACIZ01000091.1| GENE 14 9493 - 10269 260 258 aa, chain - ## HITS:1 COG:SA1844 KEGG:ns NR:ns ## COG: SA1844 COG3279 # Protein_GI_number: 15927614 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 8 247 1 238 238 93 27.0 4e-19 MPKNKTILNIYILEDNPDYLTFIQETVQQYLLIEELPAKIRLATTSATELLAAVDWSAIN DSIFLLDIELGDSATSGVDVATAIRRKSYYVDILFITSHVDEALRILEHKIAPLDMINKN SPSKTEKKIRNNILYAIKRLKARQVASPRLFSYSINSSIFSLEMDELIYIQTAPGVSGTL ELHAENEITTFPGNLKELATKYTNLCRCHKSILINPAHVMRLDITNRFVYMDNQDKLEVS IRRMGELRNILTGTRALS >gi|225002488|gb|ACIZ01000091.1| GENE 15 10262 - 10996 215 244 aa, chain - ## HITS:1 COG:CAC0080 KEGG:ns NR:ns ## COG: CAC0080 COG2972 # Protein_GI_number: 15893376 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Clostridium acetobutylicum # 11 241 209 439 447 63 23.0 4e-10 MVINVFSLFFIVKSYQYSLELLVIKHAEASKRAYYSALEQQRINTSRILHDYKNLLATLQ LSLQKSSPHHSSDVRTIVTQAQDALQKAEIGKDALALIESDPLRSLLYLKWSESANRGIT MYMHTKDTVRSLESDVGFAIIRILGILIDNAIDETATLKLKSFRVLLLPARDHLEIVVAN PIPDGFDLTRLNQKGFTTKGSGHGQGMSIINDLIQQNPNISMRKAIINNDQLKITLFIGG KAHA >gi|225002488|gb|ACIZ01000091.1| GENE 16 11046 - 11576 273 176 aa, chain - ## HITS:1 COG:no KEGG:LGG_02387 NR:ns ## KEGG: LGG_02387 # Name: hpk3 # Def: two component sensor transduction histidine kinase, bacteriocin # Organism: L.rhamnosus # Pathway: Two-component system [PATH:lrh02020] # 1 150 1 150 437 244 97.0 7e-64 MIISTDLYYFLFHLPIFLIDLTFLSYIYFNDFKLRHIFLWSLAAGTLSTFLSSVGEITFG ILYATNISKKYQRFDIFWVFLFLELNLIVINLQLLVTKIVFLFLSVQSSTISNSIKLIID VIFAIVMSQVLMKKKLFINSIRKKIQKKISYLETGSYLFNSDLRFALLFRVCFFIS >gi|225002488|gb|ACIZ01000091.1| GENE 17 11752 - 11886 157 44 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229552811|ref|ZP_04441536.1| ## NR: gi|229552811|ref|ZP_04441536.1| hypothetical protein HMPREF0539_2068 [Lactobacillus rhamnosus LMS2-1] # 1 44 1 44 44 71 100.0 1e-11 MKKFKDEEMPMMTDLELSSFVGGMLRDEGFTFNKFKNWLTSIFG >gi|225002488|gb|ACIZ01000091.1| GENE 18 12135 - 14327 207 730 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 494 718 12 231 312 84 31 2e-15 MFKHTPKLGQITYYKRFYTAQVDERDCGVAALNMLLKYNGSDYSLAHLRELAKTNQDGTT ALGIVRAAEALAFETKPVQADMQLFDLEDVPYPFIAHVLKRGELLHYYVVFKATRTSILI GDPDPSVRMTWLSREVFEKEWSGVAIFIAPAPQYQPRKEDKGSLFAFVPMLAKQKGIIAN IILAAVLITVISIVGSYFLQSIIDTYIPNAMRTTMGMIASGLLVAYLLQAVLTYGQNFLM AVLGQRLAIDVILGYVRHLYELPMSFFSTRRTGEIVSRFADANKIIDALANTIMTLFLDV WIVLILGIVLGIQNGTLFLVSLIAVPCYLVIVFAFQRPFDRLNQETMESNAILSSSIIED LNGIETIKSLTGERVSYERVDREFLTYLKRSFSYTKADQLQQAIKGLLKLALNVVVLWIG ASLVIANRMSLGQMLTFNALLSYFTNPLESIINLQPKLQMARVANNRLNEVYLVESEFKE QRHLTERHLIEGPIRVRDVSFKYGFGQDVLKNINLEVPENAKYTIVGMSGSGKSTLAKLL VGFYPVDADKGTITFNGIPVKDINLTTLRQYIEYVPQDPFIFSGTVLENLTLGSRSDVSE QDLTQACLAAEIAADIANLPQQWQTKLSESGSILSGGQKQRLAIARALLSPAKVLIFDES TSSLDTITERKIVDRLLAMTDRTIIFVAHRLTIAAKTEQIVVMDHGKIVEQGDHATLLAQ DGYYARLVHE >gi|225002488|gb|ACIZ01000091.1| GENE 19 14340 - 15719 1098 459 aa, chain + ## HITS:1 COG:no KEGG:LGG_02385 NR:ns ## KEGG: LGG_02385 # Name: not_defined # Def: bacteriocin ABC transporter permease # Organism: L.rhamnosus # Pathway: not_defined # 1 459 1 459 459 692 98.0 0 MMDPKKLATTEYYQHRFRNFSTMIIMPSTILFLGLLLFLIFARREVTVLTAAEIEPVKAA VTVQATAANRIVSNRMKEGKRVKKGETLLVYHDVANPTQIKLLKQQLATLKEQQQQLDVL KQSVTENKDLFSKADRFGYQQQVQDYLSQRRVLTLTAEAEQATQTVASEKNKEIDRLLSA SIQTSQAKMAAISEAKAAIQANKPLASRHAYHYLYQQYESEIKNTDAEAQANLKRQYLAQ LQTQLDEEQTNLTSLEQQRAGQKQADVSAQKAGETQANLTALQSRLQQTAVAEQTKVQQQ VQADEAKLATLNDETQNYHVKASASGVLHLETALAGNQYVPSGSVLARILPDLTEQTVAD IKLGVSPTEIMSIKRGQKVRLRIAENVPTPTILDGRVYAIDVAPTRDPKVGNFFTVKARV KLSKSQRQSLYYGLAGQASVITGTKTYWDYFADKMFNHR >gi|225002488|gb|ACIZ01000091.1| GENE 20 15837 - 16190 248 117 aa, chain + ## HITS:1 COG:no KEGG:LGG_02384 NR:ns ## KEGG: LGG_02384 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 117 1 117 117 183 100.0 2e-45 MDYEEELETKGYIDCLLHELHEQPQLIRQTNIEEVVERTKEEIIRDGFHGYELRRHVFRM ILRIDFILTTESVRLSQEGRDAIDELRRIANGQKKEDPRRFLRIRHFLAQRFQHHMQ >gi|225002488|gb|ACIZ01000091.1| GENE 21 16370 - 17725 1058 451 aa, chain + ## HITS:1 COG:SA0699 KEGG:ns NR:ns ## COG: SA0699 COG3610 # Protein_GI_number: 15926421 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 307 442 1 135 164 65 27.0 2e-10 MKAKDNQADRGDQPLSEKHHMQIPWYDVIVSEERQADHATLEERASLVGRVGIMLLACGT GAWRVREAMNTVARALRMSCSADIGLISLSYTCFSNNHAYSEVLSLPKSGVNTDKLDALE RFVRHFDKEYATQTVRDIHHRLDQIQKMSGNYDPLRAGLAAALACCAFVFLLGGGPIEMV CCFVGAGIGNWLREIMIRRNWTLLACIGVSVAVACLVYFIAFRGLEMGLGIAARHEAGYI GAMLFVIPGFPFITSMLDISKQDMRSGMERLLYALMITIVASLVGWLVAMVVHLRPENFV DLGLSPVLLLIYRLIASFCGVFGFSVMFNSPRRMAIQAGLIGAVANTLRLELVDLNTIPP AAAAFIGALVAGLIASAINRVDGYPRISLTVPSIVIMVPGLYIYRAVYNIGLNNIGVGAE WMTRAALIIMFLPLGLFTARLIMDSRWRQSD >gi|225002488|gb|ACIZ01000091.1| GENE 22 18025 - 19002 870 325 aa, chain - ## HITS:1 COG:SMc01702 KEGG:ns NR:ns ## COG: SMc01702 COG0667 # Protein_GI_number: 15964217 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Sinorhizobium meliloti # 1 325 1 328 328 274 46.0 1e-73 MKYRLLGKTGYKISEVSLGTWQLGGKWGAPFDANVARETLDEAYDRGVNFFDTADGYQGG ESEKMVGAFVKEHPDVHFTTKIGRKEEPLTAEHFDPDHIRRYVDESRQNMGLDSLDVVLL HCPPMQVYYQPETFFTLDALQKAGKIRHYGVSIERAEEGIKALDYDTAVVEVIFNMFRLR PADTFFPLAKQHNVGILARVPLASGLLTGKFDEKTQFAPTDQRANNRHGEHFSKGETFSG VDYLTGVKAARELKERLGSDNLAATALRFILMYDAVSAVIPGASNPTQIERNTDAAEMPA LTPDQMAVVKDVYERMIKNPVGYEW >gi|225002488|gb|ACIZ01000091.1| GENE 23 19235 - 19525 284 96 aa, chain + ## HITS:1 COG:no KEGG:LC705_02377 NR:ns ## KEGG: LC705_02377 # Name: not_defined # Def: prebacteriocin # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 96 1 96 96 179 100.0 4e-44 MSKKTQQLFQAIDIAYNDPEMAKHPEIRQQLLEAAKDLNRDVPYQMVALKLRRTISRYVL LNHLQSPAALSQLYTTIGATGDRYFGEATFFGQLFR >gi|225002488|gb|ACIZ01000091.1| GENE 24 19553 - 20329 474 258 aa, chain - ## HITS:1 COG:no KEGG:LC705_02376 NR:ns ## KEGG: LC705_02376 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 258 1 258 258 474 100.0 1e-132 MKKLMKLRAANDQLLKQIHGLDHNYTETVVQYLRGALSKDPYAVEHAISDLLTTLIDAYQ AGHRVSSFFSDDPQTAADNILKELPRASVSYHFAIFWPLIMFLLIESIFLMFISQDRQLT AGNIALAGANVFIMIPISYGRGIFFNKIARKTVLTWLAALVAIFFAPALIDYFSHGLLDL AISRPSLLGFSLVLGAFNLGMALWFRYAALVYLAWTGIWLIAALGLSLPVSQITVIFGII GIVGAVASSFFRFEPPEV >gi|225002488|gb|ACIZ01000091.1| GENE 25 20373 - 21158 564 261 aa, chain - ## HITS:1 COG:no KEGG:LC705_02375 NR:ns ## KEGG: LC705_02375 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 261 1 261 261 440 100.0 1e-122 MKKLNRLRTANDQLLKNIHGTDYTYTETVIQYLRGALFKDPYAIEHAISDLLATLIDAQQ AGHRVASFFSDDPQTAADNILAELPRVSWWYLFDQYWPILMFLFSSSIFTMLVSQDNQLS LSNTIAPLTVVFAFLGLPFARGASFNKLSAKTIFGLLLVVTLLVIVPLILGYLTVSHSEF AFSHTTLTIICGSCAVLNLAVALSFRQIAKLFLGWSTIWLLALAGLLLPISAFTVGIAIA GVVLAALLLFYHPEPRSGLIA >gi|225002488|gb|ACIZ01000091.1| GENE 26 21155 - 21487 173 110 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42783874|ref|NP_981121.1| 30S ribosomal protein S14 homolog-related [Bacillus cereus ATCC 10987] # 6 106 10 110 114 71 34 1e-11 MQPSSQMLKGILEGAILRIIQQGDIYGYGLHEKLGTLGFGNIPEGTIYPLLLKLQKNKLI VGVRRPTGNGPDRKYYHLTDAGQDALADFQQQWQQLAQAMAQLNQGGTES >gi|225002488|gb|ACIZ01000091.1| GENE 27 21618 - 22265 473 215 aa, chain - ## HITS:1 COG:SPy1834 KEGG:ns NR:ns ## COG: SPy1834 COG1396 # Protein_GI_number: 15675661 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 133 1 126 195 61 25.0 1e-09 MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQ LLREDQDIVQHYETISKQAQRYQKYFQITYFLNILLILAIWAVQITSSNSKTIGWLFLAL LINLVVMATHYPDYHTWIKGTAHRLLLILLAVGLSTVLLVLSFDGAASLNTARAASNRSV VSLIGFYIGLLIKPLTEAFSIIFAIFGFAELKEQP >gi|225002488|gb|ACIZ01000091.1| GENE 28 22559 - 23614 521 351 aa, chain - ## HITS:1 COG:no KEGG:LC705_02372 NR:ns ## KEGG: LC705_02372 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 351 1 351 351 711 100.0 0 MPSIADYPQRLNLAPFQQTRLTELDAGLFAQLGYLNFNYLIGQPYARFADLNDSSRLNKA TLTTWAIPTHQAMLQAMRQSARFARVTWTNWLETCSHRNEEDFGAITFTLAPHVYCVSFR GTTNKLVGWKEDLNMSFMPTIPAQRRALSYLTRQISRHPGTYYLTGHSKGGSLAIYAFDN LPQPLADQIAHVYSFDGPSGVPLDPNHRDRVTKLVPQSSLIGVSLDPATNFEVVKSHVKL FGQHDVLTWNIADHTFARLPTTTWISRYFQKTFALWLAGLDTKATAITVDALYTMLRSGN AITLDDLAKTKNHWRHYLHAFHELDKHHRQQLGKSFRCLLGAMAGSLVKTH >gi|225002488|gb|ACIZ01000091.1| GENE 29 23807 - 25015 1026 402 aa, chain + ## HITS:1 COG:YPL245w_2 KEGG:ns NR:ns ## COG: YPL245w_2 COG3410 # Protein_GI_number: 6325011 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Saccharomyces cerevisiae # 228 395 3 171 175 159 44.0 1e-38 MPDLAQSTFILPQDATLTIAQAALKQKIHNFIMANYQADKTHLLIVSGDAGSGKSVVLDA AFAQLQQAARAGVGPLAGTDNKLLVNHNEMLKIYKEIAGAKSYFRKKDFMKPTPFINAYR KAGKRADIVFIDEGHLLLTAPDPYNNFRDANQLTDILQLARLVVLVFDFHQLVKLKSFWT QALLKRITSGYSVAHFQLTEQMRVGDAAVNNWIDQFVRGRITPLPHPEKFDFRVFADGQP MYRLIQQRDAEVGLSRLIATADYPFTVLDKKTWYVTAGSLRLPWDKINFTDRPWAQRPET LHEVGSIYTIQGFDLNYAGVILGPSLGYNAEKDRLTVNLSQYQDKEAFKKRPDLADTQAA KIAIVMNAINILLKRAKYGLYLYAADPALRQRLLQAHDLGRE >gi|225002488|gb|ACIZ01000091.1| GENE 30 25184 - 25741 588 185 aa, chain + ## HITS:1 COG:no KEGG:LGG_02373 NR:ns ## KEGG: LGG_02373 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 185 1 185 185 349 100.0 3e-95 MAEKYTAEIVPLNAEKIGTKAHGTAEFTVDGAQLRIHIEMFDTPANVQHWEHFHGFPDGK PAEIATAAQDANGDGFVDLPETEPVSGTTMVPFDAEPAKMHVPNDSYPVADADGHYAYDK LVDLKELQKAFKAAFGSEDLQLDKRVVYIHGVPDSLELPDTVKGTVMNYDAHVTLPIAVG KIVRA >gi|225002488|gb|ACIZ01000091.1| GENE 31 26037 - 28967 2138 976 aa, chain + ## HITS:1 COG:BH0361 KEGG:ns NR:ns ## COG: BH0361 COG4932 # Protein_GI_number: 15612924 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 731 882 1193 1343 1661 67 35.0 1e-10 MLMILLMLVTQIGSTAVPVAESAQTNPKHDVRDASVQPSTRSAASEAAEFDLEAAASAPS TSAAAKQATTKDRQHIQLEAGKSWHGDGHTLTYNFDVQRSEIQVKLILAKPQDQTGQQVV KFANAQGFTSQPAHTNGEITRRLAEKTAEKGEYLLTKKLPDTKQQAASVKLSLDGFNDAA QVLALDVDLQLPARLVNDDVQEPAALSKDAHSLILPPSALGTIKIHATKADGAALSDEEA QIYRKQSSSTRSKYGSRWAMENGVSSDYVSRSDATAIIFKDAVQNSNGPSNLLDAKIKVD IDHVGSASDLDGNRFEIGAYVELTGIRVRPVEWRDTPQDVGIDFSNNFFSGMSFANVLYY DWRVIFYDKATRQRLNFIPQSEANQNSTLTFTSLNPGEFVWTEQAGMTPTYDDRFITDWQ FEEGTWITSDKATFETQKLGARGDEQRGYTSQTWGNWVDPIDHENMTEWEDRLGAPTFGR GAVAFTLNGTSHTFRRGTYSNGGGTWVANGSGQIELIDPNVTNNKSVSANAEAGGGAEED KTGTIWTANDLDDQVVNQHYNGEPFYYYINQEVYSMGDYVVKPTKIVVTDLLPEHVELIP DNNNSPPTYQKAFQLFNATDPDAVSQDRKMALTEDVSDFVVTQEGDRQRITLTIGREDVQ KIHFHSGFFSLRLKVRPTKDPDTLTKRLTLVNQATVKFFDTEERYSKETNAVQVHLDPAG RFPAEFTKKNQYGAVVPGSRFVLKQGDTQLQTATADSQGKVSFGTLKPGDYQVSEIAAAG HELQTEFDLKVAADGTVTVGRNGEIWPDTTVINQLKPTELELIKIEKGKNKLANASFALY RGNQTTPVAQGTTDENGQLRFTHQLTPGTYRLTETKAPAGFDRLNGSFTFKINAHGTMVD LAYSGSDLSSDEYGFEFIPDAGDKLNRIRFTLTNHSLETLLPKTGGSGILLFVMVAISAC GGGWLLYLYLKRKEAH >gi|225002488|gb|ACIZ01000091.1| GENE 32 28969 - 30324 1085 451 aa, chain + ## HITS:1 COG:no KEGG:LC705_02368 NR:ns ## KEGG: LC705_02368 # Name: spaE # Def: pilus specific minor backbone protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 451 1 451 451 882 100.0 0 MRRFYWWLAPLLLLIGIVLGNTPQWVHAADQTAEIVIHKRIYRDIRQPEDVWYENDGHRI DPNNPDKDGYKLLSKTSGLNGANFEVYDASSLLKPNMTPEAIRALVDRYQNMTRKQALKF ARANLKLAGQGNKGIGLMNTKTDPTLGEDGISRITVSVDQQAPTKAYLMIEVAPDPSTEL NVDLERKSSPMLVVFPVTDPISDNPLRTVHLYPKNVGYVRDPYFFKFGVHPDGTSKRLAG AIFAIYRIENGKKLYLDMSPVTDLRNKWVSTTDPLHDDRVNKFVSDQDGLVNTGERFLPA GEYFFEELQGVPGYEVDAKSRAIKIEIPDSWEDEEGNRRFVLIDGQPMQENFGGVVTPEM ISSGYPRVYNYADKQAPTTGDQTAGPSTTQLGNHGQDTNGTGTHPSKRQSGYLPAMSDWR NLRFVLLGSLLLLLATYFFIKNKKARHHACK >gi|225002488|gb|ACIZ01000091.1| GENE 33 30315 - 31868 1463 517 aa, chain + ## HITS:1 COG:no KEGG:LC705_02367 NR:ns ## KEGG: LC705_02367 # Name: spaD # Def: pilus specific major backbone protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 517 1 517 517 992 99.0 0 MQVTFKKIGHSLLAALMLMSFLLPLLSAGKTVHAATTTVDFTLHKIEQTSDEQIQNTGHD LGLTGRKPVQGAQFKIFNVTDAFYQLLENHDKTTAASMISQNLGQYVNLQDPNAAAVTTD ADGLAAFKGLAAKTNGRHSVYAFHEAVTPQPYQKAADMIVSLPVRHDDGTDLTNIHLYPK DSLVTKNLTEINEQAVATKDLHDVAVGDVLTYQVQFQIPHDIGALADHSQDTFKYNQFKV LDYMTKEGLTFKALTAITVDGQDILKALTGKMAFMTSNDAAWQHTHNYPFGFELDFLGGV DPDAVRNLLTQYAGKRVTVAYTGIVNEKMVPDQKVSNTAEVSFDPNSKITVDGPEIQTGG IRFFKHEAGSSKSLANATFILQRMNGNVREYAVLEGVNGMVGTYQPTKITWTTNQDAATK LKTSGAETANLTIQGLLPGRYTLVETAAPEGYEILDPTTDFEVIAGTWGTKTIRIANTPV NQLLPMTGGIGLFAFLMIGAILMGGGHLMKKKTSKKV >gi|225002488|gb|ACIZ01000091.1| GENE 34 31875 - 32699 529 274 aa, chain + ## HITS:1 COG:SP0467 KEGG:ns NR:ns ## COG: SP0467 COG3764 # Protein_GI_number: 15900383 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pneumoniae TIGR4 # 50 270 15 248 261 159 40.0 6e-39 MTKKASGTSRLLRWFVILLFTAGAACFCYPFAATAINELLLTSRRAAAQQEAKQNAAVQD EQRAEENRALAQTGLRPGQDPFQSRQKFNQAYVKRHLIGRVVIPKLAVDLPLFDTTNNTL LDQGAVVLPGTSYPRGGKNTHTVVSAHGGLPTKRFFTDLNKLKRGQKFFLQVNGKKMAYQ VFRIKTVRPDETQSLRIEPGRDLATLMTCTPYMINSHRILVTGKRVPYTESLEHAAESAD HWRLWLSIAVVVGVLGLALLSFYLARRYLRRPRA >gi|225002488|gb|ACIZ01000091.1| GENE 35 33295 - 34020 450 241 aa, chain + ## HITS:1 COG:no KEGG:LC705_02365 NR:ns ## KEGG: LC705_02365 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 241 1 241 241 405 100.0 1e-112 MRKRLVILGSILLSFVGLYALLTSYQSATTTTAKATAKEYKVVRQKDLVLSGVVRAEEIK VLDSTSPENVKIKNGEHITKGQVIYQTGYTTPISGTFIVKEDGSYAVASDAKYIDASVTE LDRHLILQGMQVKVANIDGSKKYDCVVKKVDVLPSSEESITKYRLQVPIQGVNVGVHMDI NIPYSSVLIPGKFEDKGQILIKKSNSKAFKKRKINIIRTMGLKYASIAEVPVGSVLKEVA K >gi|225002488|gb|ACIZ01000091.1| GENE 36 34017 - 34685 347 222 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 221 1 219 245 138 36 9e-32 MISLQNINKTYFLKKKGRGQQVLRNINLDVDDGEFLAIVGPSGSGKSTLLRIIGMLDNEY TGTYQFNKQIIGDLSDDIVSEIRNHRVGFIFQNFELLARYTVGENIKLPLLYGKDRDDPD NHVLELLEMVGLQDKIDEYPASLSGGQQQRVAIARSLILNPSLIIADEPTGALDTTMSKK ILQILLKVSGQGRTVIMVTHSPEAASFASRQVKIVDGVLTEI >gi|225002488|gb|ACIZ01000091.1| GENE 37 34696 - 35865 445 389 aa, chain + ## HITS:1 COG:SA0193 KEGG:ns NR:ns ## COG: SA0193 COG0577 # Protein_GI_number: 15925903 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 39 389 40 392 392 124 26.0 3e-28 MKIKFLLKELVNSLCANKRQTLLTMGSLMIGIMSILLVLGLGNGVQDSISRQIADVTGGE KGFIVSFISKQDGYGFTEKDQERLEGLTSVKKVSLKNDATVNDAILKFNGTGKHEQITYD QISEKTLSTTKDISLIAGRKLTSLTKNGVRTIAIKKELASKLMHAGNILGKQVSVNGTNY DIASIYEGVVETPDVLMSRQAYLMTRGLKDQSNRIKVTYRSSRLRTERAVMNYLNKYGDN SSMGRYQLLNVQQIVSQLNRNTSLATDLIAGVAGISLIVAGFGIMGSTYSSIAERKNEIG LRRAFGAKRKDIRNQFMAEGLLMTITASIISVVLVKAASLMLGRSLGIPIIITWNNMLVA VLIPNIIGMIFTFFPAMSASKKNVLDLLR >gi|225002488|gb|ACIZ01000091.1| GENE 38 36886 - 37428 341 180 aa, chain + ## HITS:1 COG:no KEGG:LC705_02362 NR:ns ## KEGG: LC705_02362 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 180 1 180 180 332 100.0 3e-90 MRVKQLIMKILIASLAMTAVVGLPRGQVKPKTMSLSARQTIQTHAAQKTIALFQQMAVFP DGSQRPLAGGVFAFYRFDIRGRKQYRMKNGQWRLIGNPLTTKGVYLAQADHLGVVGVTGK LTNGHFYSERLRLPERYAVKLPLPVKVHVNQGHVTVNGQPVGQNRALPRIYALRVAVERQ >gi|225002488|gb|ACIZ01000091.1| GENE 39 37998 - 38183 152 61 aa, chain + ## HITS:1 COG:no KEGG:LGG_02367 NR:ns ## KEGG: LGG_02367 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 17 61 1 45 45 83 97.0 3e-15 MKQHRNFATALAGAMSVGFILAKLSNIPFKWWIYVGGVCGSFLGEWLFVTRKAKRKHKHA A >gi|225002488|gb|ACIZ01000091.1| GENE 40 38632 - 39468 716 278 aa, chain + ## HITS:1 COG:L0117 KEGG:ns NR:ns ## COG: L0117 COG0263 # Protein_GI_number: 15673591 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Lactococcus lactis # 3 263 6 266 270 286 54.0 2e-77 MVKRMLHCKRLVVKIGTSSLIHQNGKVNLQTIDRLAYTLAALTNQGYELVLVTSGAIGVG MAKLGVTVRPAEIAQQQALAAIGQSELMTLYTQRFSDYGAKIGQLLLTHDVFDYPQTRQH VLDTIDALLKRQVIPIINENDSVAVDELDHRTTFGDNDQLSALVAKQIGADLLVVLSDID GLYDRDPNRHANAALIPEITHVSAKILAGAGGSSTRFGTGGMVTKLKAAQVMMRAGKHMV LTSGRDPRIILRVVAGESVGTWFGAELEPVPSEVHAAN >gi|225002488|gb|ACIZ01000091.1| GENE 41 39549 - 40805 1132 418 aa, chain + ## HITS:1 COG:lin1227 KEGG:ns NR:ns ## COG: lin1227 COG0014 # Protein_GI_number: 16800296 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Listeria innocua # 7 416 3 414 415 461 58.0 1e-130 MDVTTIDLEQMGRAAKAAATVLSQLTTAQKNAGLLAMATALETHTETILEANHEDLKAAA SLPAKFTDRLVLTAERIADMAAGVRQVAALPDPTAQTDKAWVNHAGLNIAQKRVPLGVVG MIYEARPNVTVDAAALTFKSGNAVILRGGKEALHSNLALATVLQAALTAQGLPKDAIQLI TDPKREVANQMMHLNGYIDVLIPRGGRGLIKAVVEQATVPVIETGAGNCHIYVDAHAQAQ MAIDIVVNAKVQRPSVCNAAEKLLIHADVANEQLPLIAAALQAHGVELRGDERARAIVPN MQVATEEDWDTEYNDLIMAVKVVDSEEEAIAHINAHNTKHSEAIITDNYQNSQQFLQQVD AAVVYVNASTRFTDGFEFGFGAEIGISTQKLHARGPMGLAALTTIKYQVLGNGQVREG >gi|225002488|gb|ACIZ01000091.1| GENE 42 40874 - 42106 758 410 aa, chain - ## HITS:1 COG:CAC0458 KEGG:ns NR:ns ## COG: CAC0458 COG0477 # Protein_GI_number: 15893749 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 9 395 8 394 409 289 42.0 6e-78 MNRHVFAATFSSLRSKNFRRFWTGQCISVMGTWIQRTTQTWLVYQMTKSAFLVGLLAAAQ FVPIMALTLVAGTLIDRYPKRQILLFTQFGFLLLGATMTLITYLKIVQYWQILAIALGYG ILQSFDTPTRQSYVIELVGKKDLINGISLNSSIFNLAKIAGPSLAGILMVTLGVAPCFLI DTLSYVAIIAGLLMIHQDHPIASHRSRHILLDIREGLSYILHHADVKLSAELMLVICTLN FNNNVIIPIYAEEVLHRGAQGYASLLSATGVGSLVAAFLMSYLASFGLRRDLYLAVAVGT ALIQSSMLFIHVYWLAMLLMVLIGFCNMVFLNQSNASFQFGIPNQLRGRIMSVYVLLNQG STPIGSLYAGSVMDAAGGLWGFPACGVLALMLTMVIFGFHQSTIKKWVSR >gi|225002488|gb|ACIZ01000091.1| GENE 43 42676 - 42930 260 84 aa, chain + ## HITS:1 COG:no KEGG:LC705_02357 NR:ns ## KEGG: LC705_02357 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 84 1 84 84 163 100.0 2e-39 MKHAKSGMTVLCQANGNMEYDFIGRIEKCYENSALVTILDYDPRDKFNVQDLVGRTVIAF KRMKQSNRDRLESDFDQPMQRDVG >gi|225002488|gb|ACIZ01000091.1| GENE 44 43130 - 43336 217 68 aa, chain + ## HITS:1 COG:no KEGG:LGG_02361 NR:ns ## KEGG: LGG_02361 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 68 1 68 68 120 100.0 1e-26 MLFAAHLRDYEVVGQYTDKWGHRHDSSRVCHQMTKKEARDAMQRYLLQHYSDSVDLNAPI KVKVQVAK >gi|225002488|gb|ACIZ01000091.1| GENE 45 43526 - 43783 334 85 aa, chain + ## HITS:1 COG:no KEGG:LGG_02360 NR:ns ## KEGG: LGG_02360 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 85 1 85 85 146 100.0 3e-34 MSQEIVVGDKVSVRKTKDVPLSFKGTVEKLYANAAMLTIDSFSPEDASMVEDMKNKTVVN YKHIKKGGKAVIPPAPEEKRPGARH >gi|225002488|gb|ACIZ01000091.1| GENE 46 43983 - 45161 262 392 aa, chain - ## HITS:1 COG:BH2731 KEGG:ns NR:ns ## COG: BH2731 COG3835 # Protein_GI_number: 15615294 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sugar diacid utilization regulator # Organism: Bacillus halodurans # 223 383 204 363 371 62 23.0 2e-09 MIYLESVLKTQSRRLKPVNSANLSGHVVSAITIMDNTNVRQWLRGGEIVLSGSHTLPTEQ NQLQELLSQLKISQACCLIIKCVTSPISSQKFSNILLEEDVLPIFKMSSNITYLELMNDV NMMLFKDRQVNRLAELDLEHLLRTDKPRDSDFDYISSVKSIDLYKQNACVIQITLTSQTN LNHRIHDLFTLSRQLHAIFSSFITNRILSSYFVLENSDGATMILFTGSKLESDVSLLHHL QLSSQVKISNQALYIGISTLHPARELHKCYQEAVFSIKMAQIFNYKNTVTKFNDVAVWSL IEGIQESASLELTTQRLKEVLKNQDLFKTLKLFFQNNESIKKTSQQMFTHPNTIRYRLKE IKSQTGLDYQKTDDKFRLYIAVITQTLAHANN >gi|225002488|gb|ACIZ01000091.1| GENE 47 45290 - 46507 567 405 aa, chain + ## HITS:1 COG:SPy1340 KEGG:ns NR:ns ## COG: SPy1340 COG0477 # Protein_GI_number: 15675278 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 4 405 2 403 406 296 44.0 5e-80 MEQSARSFSREQRKALFVSGSGLFSQSASTMLLSFVLASMMTSFHVNGAAGGFISTITNI GMLAGGLIFGPMADRNGRMKIFAVTTIIYASATGLMAIAKNIQMVYLFRFLVGVGGGGVY GAIMSMVADVFRNDQRGRITSYVTILGQIGSIIAALAAAIIIPILGWRGLFVFGALPILL GFYVYFKMPESKQWLESKNELINQRNSKITLLDLFRDGRASNTIKLIIMATVQIAGYFGL MNWLPSILQQKSGLSVSGSSIWMIATILGMSLGMLVFGQIMDRIGSKVAYSFFLIASAIS VFMYSFADTQITLLVGGAIVGFFANGMNAGYGAIVANLYETRIRASANNLIFNVGRAIGG FSSVIIGFLLDHSSLVITMSFLSVLYIISLLTVLTLKVKKGDSYE >gi|225002488|gb|ACIZ01000091.1| GENE 48 46500 - 47243 414 247 aa, chain + ## HITS:1 COG:HI0280 KEGG:ns NR:ns ## COG: HI0280 COG2820 # Protein_GI_number: 16272236 # Func_class: F Nucleotide transport and metabolism # Function: Uridine phosphorylase # Organism: Haemophilus influenzae # 1 203 8 212 259 124 35.0 1e-28 MSSEHLAHIQKGDLGEVTLIVGDPDRVALISKDWESKRKIEDSREFVLVVGMFRGHHVSV CSTGMGVGSTEICVVELIENGAKQIIRCGGCGAWRDDINPGDIIINRAMARTSGLMGDYV PDSYPAVADPLLVNKIYTGAVKNGFRVYTGIGLTTETYFFGQYRQPDISETALKVDGAKM KFWQDRGIINAEMESAVLFLLGSLYNIPVANCLVVHLSRATYKWEKPEDYNRIHQRSAES VLESVLG >gi|225002488|gb|ACIZ01000091.1| GENE 49 47271 - 48500 665 409 aa, chain + ## HITS:1 COG:SPy1340 KEGG:ns NR:ns ## COG: SPy1340 COG0477 # Protein_GI_number: 15675278 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 386 7 388 406 298 43.0 1e-80 MQEAESYRKKILVSSMLGLGLEGMDILLLSFALSSIINEFHISSAAGGVLPSVTNIGMLV GGVIFGYWADKKGRIKIFTYTIFIFAIATLLMAFARSIGEIYILRFVVGLGAGGEYGIGM ALVAEAFPKERRGQMSSWITVGGQMGTLIAALIAATVIPLAGWRAAFIFGVIPVFLAYFV RRHLPETKSWQLAHKSGAEKSDHPRISLLFNQPKIALITVGLTIMSAIQVAGYYGLMNWL PSLLEKQQGLSVSGSSLWMISTIIGMSLGMLSFGKLFDKFGSRLTYSVFLIMSGMSVTLY AFVHSAFLMLIIGAIVGFFANGMNAGYGALISSFYPTEIRSLANNAIFNTGRAIGGLSPI LIGYIIDEKGFSVALLVLGSFYLISLVIVNLIPNPVKRRNSDSQGRVVE >gi|225002488|gb|ACIZ01000091.1| GENE 50 48497 - 49687 276 396 aa, chain + ## HITS:1 COG:BH1530 KEGG:ns NR:ns ## COG: BH1530 COG1015 # Protein_GI_number: 15614093 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Bacillus halodurans # 1 396 3 393 393 386 48.0 1e-107 MKRFERIITIVLDSVGIGEAPDAKSFNDQGADTLGHLCSYWNGKLAIPQLEDLGIGRILR ATPLKGIKAKSGTSSAVGKMREVSAGKDSLDGHWEMMGVPVDSALDTFPNGFPQRLVEQI EQFSNRRVILNQVYSGTRAIEDYGEEQIAEGALIVYTSGDSVLQVAACETVVPVEELYRI CRFIRFTLDDSGWQIGRVIARPFIRMDSGSFRRTANRRDYTIVPGHETVLDILSTNNISV CGIGKVNDIFSGRGIDRKIHTTSNQDGLYQVINILEDKKYRFIFANLVDFDSQYGHRRDP RGYGKELERVDHLLQSVIAKISESDLLLITADHGNDPTFCGHDHTREYVPLIAYSPNLTN GDLGIRETFSDLGATVLENFNLKSKQNIGASFLSKL >gi|225002488|gb|ACIZ01000091.1| GENE 51 49815 - 50024 390 69 aa, chain + ## HITS:1 COG:no KEGG:LGG_02357 NR:ns ## KEGG: LGG_02357 # Name: not_defined # Def: CsbD-like superfamily protein # Organism: L.rhamnosus # Pathway: not_defined # 1 69 1 69 69 73 100.0 2e-12 MADFDATKDKVSGKVKEGAGKLTGDESTEAKGKAEQMVGNAKEKLSDAKDKIAEKFNDVV DKSKEKKER >gi|225002488|gb|ACIZ01000091.1| GENE 52 50187 - 51302 1299 371 aa, chain + ## HITS:1 COG:L78730 KEGG:ns NR:ns ## COG: L78730 COG1304 # Protein_GI_number: 15673234 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Lactococcus lactis # 7 364 20 381 383 434 63.0 1e-121 MTVVNGYEQSDAEKKLDILNLPSLEGEAKKIIPTGGFGYIVGGSEDEWTLAENTKAFNHA QIVPKALSNIDSPDLSTNFLGIDLKTPVMMAPTAAQGLAHSQGEKDTARGLAAVGGLMAQ STYSSTSIADTAAAGNGAPQLFQLYMSKDWDFNKSLLDEAKKAGVKGIILTVDATVDGYR EEDIINNFQFPIPMPNLEKYSEGDGKGKGIGEIYASAAQKINEDDVRRIAEYTDLPVIVK GIQSPEDALRAIGAGAAAIYVSNHGGRQLNGGPASFDVLPAIAKAVNKQVPIIFDSGIRR GSHVFKALAAGADLVAFGRPVIYGLALGGAQGVQSVFEQIDHELEIIMQLAGTKTIEDVK HAPLTHFNYAD >gi|225002488|gb|ACIZ01000091.1| GENE 53 51548 - 51832 356 94 aa, chain - ## HITS:1 COG:no KEGG:LGG_02355 NR:ns ## KEGG: LGG_02355 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 94 1 94 94 162 100.0 4e-39 MTTYDVTFNTVDGKSLIKRNVQSDHENARVWEDAVERFDADHLYIKMNDKTMVSLLRRAV VRIDMTELPSDVEKRANRRDEFRNAMYTLSQIGL >gi|225002488|gb|ACIZ01000091.1| GENE 54 51851 - 52969 810 372 aa, chain - ## HITS:1 COG:SA0341 KEGG:ns NR:ns ## COG: SA0341 COG4292 # Protein_GI_number: 15926054 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 12 257 19 269 377 107 30.0 3e-23 MAKSHQSVTMVELFYDLIFAYAVGRMAQTLAVPVHGMIAPQVLVEFLLMLLVFWTIWTFQ TVLIDRFSHHEVTHNLFTLFNMFWVIVLSTAINPDFAKTKWPFQLSAAILFLSLASQYGL LWRRKHSQLAKTFGITLAACSFVILISLFIKPYTLSFAVFFGGVLAAGLMPLLLRNVLKA TPADLGNLSTRYSLLVLLIFGESIIGVAETIYAGLSLQAGLFFLVVILLFIAYQLVYDNG LDRRQKTAGLAVIYLQLPLLAAILSLSTFIHSWLAGLLDPQWFALAITVTLAVYYFSLIG YLSAYPVKHIDIGFKRWFYLGFSVLIFGIFSFMTTIMPLPFMFGLTAYLLANTLYLWQFI LHPNDAMYNKLG >gi|225002488|gb|ACIZ01000091.1| GENE 55 53127 - 53798 456 223 aa, chain + ## HITS:1 COG:NMB1604 KEGG:ns NR:ns ## COG: NMB1604 COG0588 # Protein_GI_number: 15677454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis MC58 # 2 220 1 224 227 213 47.0 2e-55 MVKLVLLRHGESIANQQNTYTGWSDVGLTAQGKAQAAAAGKKIAATGILFEHVHTSVLSR AIMTAYIVQDAIGQNYLPITKSWRLNERHYGALRGINKDLTRKLFGPDQVASWRRSFYAH PPLLAHPSRSRRYHAYPATIIPRGESLADASERLLPYWSAELAPRLMAGKNQLIVAHGST LRALVKYMEAISDAGINKVEIGNAQPIVYTLDQHLTILNKQTL >gi|225002488|gb|ACIZ01000091.1| GENE 56 54000 - 54557 452 185 aa, chain + ## HITS:1 COG:lin1979 KEGG:ns NR:ns ## COG: lin1979 COG0517 # Protein_GI_number: 16801045 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 2 183 24 206 209 146 46.0 2e-35 MTGEMLATQLKISLATIRADLRLLTTVGILDARPKVGYAYQGASVLSVDNDALFNTPIAK ILLPPTEIKLTTSMEEAVTKLFLADVGSLYVLDDDGALVGLISRKDLLRASFTDRDTTLP ASIVMTRMPNVVTVTADTTIMAASKLLLKHNVDSLPVIQKHGDTHVIGKITKNRIFKYLI ETLAP >gi|225002488|gb|ACIZ01000091.1| GENE 57 54857 - 57487 2281 876 aa, chain + ## HITS:1 COG:lin1981 KEGG:ns NR:ns ## COG: lin1981 COG0574 # Protein_GI_number: 16801047 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Listeria innocua # 2 856 3 860 879 951 54.0 0 MKQIYAFAEGNMEMRALLGGKGANLAEMTNLGLPVPPGFTLTTAACHDYQQHHGLSEALL TELDQHIQALEKATGKRFDDPVAPLLVSVRSGAPISMPGMMDTILNIGLNDQTVQALARE TADPRFAYDSYRRLLAMFGNVVYGLSEKGFDDILTTVKRQNGYDSDLALTTADLQQIILA FKQLYIEAGKSFPQSPKAQMLAAVTAVFESWNNRRAVVYRRENRIPEDLGTAVNVQTMVF GNAGADSGTGVAFTRDPATGERALFGEYLLNAQGEDVVSGVRTPQSVAVLHDQMPEVYNQ LAAIATTLEQHYRDMQDLEFTIEHGQLYLLQARNGKRTPAAAVKIAIDLVNEGLIDRQTA LLRIEPQSLSDMLHPEFDPQALQAHTILATGLPASPGAATGEVYFTAAEAKAAHEAGHQV ILMRQDTSPEDIEGMIVSQAIVTARGGMTSHAAVVARGMGATGVVGMHALTVDEHAKTAT VGDTVLHEGDWVSVDGTTGNLYRGQIPTTAALVKDSLATLLAWAKEASRMGVFTNADTPK DLQQALAFGADGIGLTRTEHMFFQPERLLQMRRLILAKDAAGRKAPLAALEKMQEQDFYE LYRLAAGKTVTIRLLDPPLHEFLPHDQREIGQVAHELGLEQNQLRERMAALKEVNPMLGH RGDRLAVTYPDIYAMQVRALMHAVFRLADEGMQVTPHIMIPLTNSETELRWVRQLVVRQI EQLAAAKGMQVSYEVGTMIETPRACVSADKIAHAADFFSFGTNDLTQLTFGYSRDDVGSF LPAYLEQKILPNDPFQTVDTEGVGALMAMAITNGRQTNPQLPIGVCGEVGGDPDSVAFFD QIGISYVSCSPYRVPVARLAAAQAALRAMKKVKAGA >gi|225002488|gb|ACIZ01000091.1| GENE 58 57707 - 59761 1953 684 aa, chain - ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 14 674 11 665 666 691 53.0 0 MASGLTANKKLRHKITAAALLVTLGVVYGDIGTSPLYVMKSIIAGNGGMGHFDTDFLVGS VSLIFWTLLIITTLKYVLIALRADNNGEGGIFALYTLVRQRARWLVLPAMIGGAALLADG MLTPAVTVTTAIEGLKGVHINGNILIDNQQQVIWVTILIITFLFFIQRFGTDLIGKAFGP IMFVWFTFLGVAGFIALSKDWSMLRALNPYYALRLLVSPDNKMGLFILGSIFLATTGAEA LYSDMGHVGRGNIYVSWPYVNLCLVLNYFGQAVWLDRHANVSAYNQISDFNPFFQMLPES IRLGAIILATLAAIIASQALISGSYTLVSEAIKLRFLPRLHIVYPTRLKGQLYIPMVNTI LWLACLAIIAYFKTSAEMEGAYGLAITITMLMTTLLLYQYLRARHAPTLIALGTLIFFSA IETVFFISSAVKFLHGGYVTAMIAFVILAIMYVWQYGGRIRDDNTYRAEMASLFAYKKQL SELRSDPEYPTYTTNLVYMTQIADDHYIKKEILYSILDKRPKRARVYWFVTVNVTDEPYT AQYTTDTYGTDYMVNVQLYLGFRMEQQVNVFLRQIVNDMMREGELPTQPQKYTTIPDRQV GDWTFVLLHEELSPQTQIKGFQKTIIQARLWLQRVTVTPAQWFGLEYADTLDETVPLVLG KIPITKLTRLSRSQVDAQAEDEDD >gi|225002488|gb|ACIZ01000091.1| GENE 59 59913 - 60788 719 291 aa, chain - ## HITS:1 COG:lin0750 KEGG:ns NR:ns ## COG: lin0750 COG1131 # Protein_GI_number: 16799824 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Listeria innocua # 1 213 4 215 301 119 33.0 6e-27 MELQLQNLVLGFKNKPNVIHDISLTMTSGSIVGIVAPNGTGKTTLLRLILNDLKPQSGKV VLDGQTYGSQKHTLAMHRQMCLFPVQDDLYPDLSGKAHLAYYARLWHNQTKSVKQIISAL DMQDYVNQPVRTYSMGMKQRLCFGMVMAANTPIMLLDEFMNGLDTINVARMSQILRGLRA EGKLIITVSHLLNNLQGYADFIYFMRDGKIIKTIDQHEQQPLYIQVAAEEANRLPRMPWQ HYPNGMLVLPINNLPGEHFNQLLLGLAAHHIVFKLAPLDLETYFNEFYDAD >gi|225002488|gb|ACIZ01000091.1| GENE 60 60802 - 61995 705 397 aa, chain - ## HITS:1 COG:no KEGG:LC705_02340 NR:ns ## KEGG: LC705_02340 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 397 1 397 397 731 100.0 0 MRYFRFQLHQLLTNRKNLAVIGIALVALICQFVFFPPNQVPPELPTSTVLTRDRDKNVAF INEPHGPHTAMWVPVTRQLVKIENRMLTAQKQQHSQAYVQATLDYLAFVRKNAANPEAQS SPFHYPLTYYFENRQYPDADAAFANITLTRSLMTLADQRDPDMTAVHQQTFWQTLFRGAL GGWLTALLLITILFANDLLTSEQRHRSIVRSSPLSPWHAINTKTLTVLTALAGVLLLSAL VVAGFVIPTHGLGSLTTAIAYFAKDGMTVTVDPIALSIALPIILGLTILLMWLFIRLNLL CQLLFHNELVGLVLSALLLFGEPLYFMHGLAFSVPQTAYYLPGYMNPAAIVSRLQNFRYD TSRMSPLAALIVVGSVIIVLEVILFIITHRRRAAIVK >gi|225002488|gb|ACIZ01000091.1| GENE 61 61995 - 63095 702 366 aa, chain - ## HITS:1 COG:no KEGG:LC705_02339 NR:ns ## KEGG: LC705_02339 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 366 1 366 366 643 100.0 0 MGTQLAFDWRQIIHSRKNIALLGLFFAAFIIAFFALVWTHRLDIQQTSEATANAAVANYA EYNLDTLSKTQKPLLANLDDQNSATGVIDLGIQLDQPDTTRNGLLSLRTAQLEMRQRHYK ALNTMPLPPLHQLKGDVLALTTLKKQQKPAVTAVSTSVAYLVTILPYLSWLTGAAAVLLA CDSWVERRRHQTLISARPLSVGVAGSSRLLTLIGFYILILVAGGAAAVGLPALLKGFGDF DYPMAIMGQTLLPLWEYLLIFMALTLLAGIWIISFSMLINTWITNAYLTTFIVTATALLP LILPQLFRFVWFLPFSYLDVAAMMRGTLIDRLNQPLASIWIGTGALFIWSVLNLGLFGYR ARKEAA >gi|225002488|gb|ACIZ01000091.1| GENE 62 63312 - 64658 1228 448 aa, chain - ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 1 446 1 443 445 506 59.0 1e-143 MSAEITSGDLDQFKQDLQATPGANALQKAVMNNGINATAENTDSKVAMTPTFSIELDTGA VSNQKQSGRCWMFAALNTMRHGIQAQFKIKDFELSQNYTFFWDKFEKSNYFYENVLKTAD QPLDSRKVAFLLATPQQDGGQWDMLSALIEKYGIVPKSVMPETYSSSKSNELNGLLNLKL RKDAVTLRKLVADKASDADIEAAKQKMLAEDYRILAYTLGNPPTKFDFEYRDDDKNYHID RELTPQTFFKKYVGWNLDDYQSIINAPTADKPYKHLYTVEMLGNVVGGREVRHLNLDIDT FKDLAIKQLKAGESVWFGSDVGQSSDRQLGILDTNIYKKDDLFNTDFTMTKAERLDYGES LMTHAMVLTGVDLVDGKPTKWKVENSWGEKVGEKGYFVASDAWFDQFVYQVVISKKYLPA ELQDVIKNEYDKPTVLAPWDPMGALASR >gi|225002488|gb|ACIZ01000091.1| GENE 63 64803 - 66122 1051 439 aa, chain - ## HITS:1 COG:SP0281 KEGG:ns NR:ns ## COG: SP0281 COG3579 # Protein_GI_number: 15900215 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pneumoniae TIGR4 # 10 436 6 437 444 355 42.0 9e-98 MSEITFDQIKAFQDQLDQHPASGALGRAVQNVGPQAASRETMDGEDMKPVFSIDLDTGSV ANQKKSGRCWLFATLNTVRHGIADEFGIKDFEFSQNYNAFFDRLEKANLFYENILATADK PLDDREVATYLSGPDEDGGHYDQAAALIEKYGLVPKSVMPETYNSDKTAELNSVLNEKLR KDAKVLRTLKQDNASEEAIAKQKREFLSVVYRILAYTFGNPPTTFDFEYRDDKKQYHRDT NLTPQSFFKKYVKWHFDDYVVIAGDPEPTKKYQQLYTINSANTVVEGHPLTILNLPPERL KQLALAQLQAGEAVWFGNDVLADMDRKSGTLKGGLFNYSDLFGVDFHVNKTDRIVTTEAE MSHAMTLTGADVVDGTVTKWKVENSWGKENGHDGYFVADASWFDQYVYEVVVRKDLLTDA EQALLQTEPINLPVWDFLN >gi|225002488|gb|ACIZ01000091.1| GENE 64 66294 - 66617 276 107 aa, chain - ## HITS:1 COG:yjdJ KEGG:ns NR:ns ## COG: yjdJ COG2388 # Protein_GI_number: 16131953 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Escherichia coli K12 # 12 100 1 88 90 65 39.0 2e-11 MTIIQFAKEAAMEFQREPGRIFNTDWDGRLMAEVTFQSIDDGQAWAVDHTFVDESLRGQG IAAQLIEAVVAAARKEGKTIEPLCSYAVHAFHNHPEYADVLRPVKDQ Prediction of potential genes in microbial genomes Time: Wed May 25 20:08:49 2011 Seq name: gi|225002487|gb|ACIZ01000092.1| Lactobacillus rhamnosus LMS2-1 contig00100, whole genome shotgun sequence Length of sequence - 36775 bp Number of predicted genes - 36, with homology - 35 Number of transcription units - 22, operones - 8 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 22 - 561 572 ## COG0756 dUTPase + Prom 576 - 635 3.2 2 2 Op 1 2/0.000 + CDS 755 - 1945 1069 ## COG1066 Predicted ATP-dependent serine protease 3 2 Op 2 . + CDS 1966 - 3081 792 ## PROTEIN SUPPORTED gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 + Term 3103 - 3164 18.0 - Term 3090 - 3151 2.2 4 3 Tu 1 . - CDS 3173 - 4069 360 ## COG1396 Predicted transcriptional regulators - Prom 4103 - 4162 5.3 + Prom 4073 - 4132 3.8 5 4 Op 1 24/0.000 + CDS 4211 - 5116 218 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 6 4 Op 2 . + CDS 5118 - 5876 466 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component + Term 6022 - 6062 1.4 + Prom 6027 - 6086 5.1 7 5 Tu 1 . + CDS 6161 - 7477 940 ## LC705_02328 internalin J + Term 7523 - 7561 6.1 + Prom 7697 - 7756 6.8 8 6 Tu 1 . + CDS 7977 - 9605 1331 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 9648 - 9688 -1.0 + Prom 9647 - 9706 3.3 9 7 Op 1 4/0.000 + CDS 9743 - 10123 305 ## COG1725 Predicted transcriptional regulators 10 7 Op 2 . + CDS 10120 - 11136 697 ## COG4194 Predicted membrane protein 11 7 Op 3 . + CDS 11150 - 11980 695 ## COG4377 Predicted membrane protein + Term 12154 - 12202 1.5 + Prom 12442 - 12501 3.3 12 8 Tu 1 . + CDS 12531 - 14024 1518 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 14037 - 14075 4.0 + Prom 14168 - 14227 3.7 13 9 Tu 1 . + CDS 14271 - 14381 62 ## + Term 14568 - 14603 -0.9 + Prom 14503 - 14562 4.2 14 10 Tu 1 . + CDS 14657 - 15226 204 ## LC705_02321 hypothetical protein + Prom 15234 - 15293 3.6 15 11 Tu 1 . + CDS 15349 - 16743 1162 ## COG0277 FAD/FMN-containing dehydrogenases + Prom 16794 - 16853 5.6 16 12 Op 1 8/0.000 + CDS 16880 - 18286 1235 ## COG0215 Cysteinyl-tRNA synthetase 17 12 Op 2 7/0.000 + CDS 18283 - 18711 317 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 18 12 Op 3 6/0.000 + CDS 18683 - 19465 603 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 19 12 Op 4 . + CDS 19466 - 20005 508 ## COG3688 Predicted RNA-binding protein containing a PIN domain + Prom 20130 - 20189 5.3 20 13 Op 1 . + CDS 20234 - 21289 691 ## PROTEIN SUPPORTED gi|15900201|ref|NP_344805.1| hypothetical protein SP_0267 21 13 Op 2 . + CDS 21289 - 21972 702 ## COG2085 Predicted dinucleotide-binding enzymes + Term 21987 - 22041 13.1 + Prom 22320 - 22379 5.5 22 14 Op 1 . + CDS 22484 - 23599 802 ## LGG_02320 hypothetical protein 23 14 Op 2 . + CDS 23589 - 24827 559 ## LC705_02310 hypothetical protein 24 14 Op 3 . + CDS 24821 - 25696 674 ## COG1131 ABC-type multidrug transport system, ATPase component + Prom 25734 - 25793 2.8 25 14 Op 4 . + CDS 25850 - 26035 145 ## LGG_02317 hypothetical protein + Term 26103 - 26160 17.1 26 15 Tu 1 . - CDS 26244 - 27128 402 ## LC705_02307 transcriptional regulator xre family - Prom 27307 - 27366 4.3 + Prom 27141 - 27200 5.4 27 16 Op 1 . + CDS 27373 - 27933 454 ## LC705_02306 hypothetical protein 28 16 Op 2 . + CDS 27915 - 28121 76 ## LGG_02314 hypothetical protein + Term 28224 - 28261 4.0 - Term 28333 - 28370 -0.4 29 17 Tu 1 . - CDS 28375 - 29166 518 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - Prom 29252 - 29311 1.9 - Term 29226 - 29265 4.4 30 18 Tu 1 . - CDS 29317 - 29814 376 ## LC705_02303 hypothetical protein - Prom 29868 - 29927 4.5 - Term 30200 - 30236 2.4 31 19 Op 1 2/0.000 - CDS 30259 - 31236 823 ## COG0142 Geranylgeranyl pyrophosphate synthase 32 19 Op 2 3/0.000 - CDS 31211 - 31798 492 ## COG4769 Predicted membrane protein 33 19 Op 3 1/0.333 - CDS 31795 - 32238 451 ## COG5341 Uncharacterized protein conserved in bacteria - Term 32359 - 32396 4.6 34 20 Tu 1 . - CDS 32411 - 34309 1699 ## COG1252 NADH dehydrogenase, FAD-containing subunit - Prom 34487 - 34546 5.0 + Prom 34391 - 34450 6.6 35 21 Tu 1 . + CDS 34597 - 35505 1078 ## COG4939 Major membrane immunogen, membrane-anchored lipoprotein + Term 35562 - 35608 7.1 + Prom 36296 - 36355 1.7 36 22 Tu 1 . + CDS 36458 - 36773 264 ## LGG_02305 transposase IS605 family protein Predicted protein(s) >gi|225002487|gb|ACIZ01000092.1| GENE 1 22 - 561 572 179 aa, chain + ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 177 1 148 150 145 44.0 4e-35 MKTRGFEIVSKYQDDNLTLPTRQTKQAAGYDFYAREDFLLRSIWRYDFIRLFRLIKNEHP LTNKDFERAKKILKPYLVPTGIKAYMQPNEVLILANRSSSPLKHGLTLPNGIGVIDADYY NNPANEGEIYIQLLNFFPRDVMIKKGDRIGQGIFMPFLLADGDQGGLAQRQSGFGSTDH >gi|225002487|gb|ACIZ01000092.1| GENE 2 755 - 1945 1069 396 aa, chain + ## HITS:1 COG:lin0265 KEGG:ns NR:ns ## COG: lin0265 COG1066 # Protein_GI_number: 16799342 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Listeria innocua # 1 395 61 455 457 559 69.0 1e-159 MDEVTVTKETRVKTGLAELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGT VLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIENVIDQMQPDYVVIDSVQTMNV PDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFE GDMHHTYRILRSVKNRFGSTNEIGIFEMHQNGLQEVANPSEIFLEERLAGATGSAVVVSM EGTRPILVEIQALISPTMYGNAKRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATG GVKLDEPAIDLAMAVAIASSYRDKEIPPTDCFVGEIGLTGEVRRVNRIEDRVKEAAKLGF KRIFVPRNNLQGWRAPKDIQVIGVTSIAEALHKVFN >gi|225002487|gb|ACIZ01000092.1| GENE 3 1966 - 3081 792 371 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 [Bacillus selenitireducens MLS10] # 1 365 29 396 397 309 46 1e-83 MKKRIIYLIFGLIGIGVGMGALPSLWDLIGWSANHFLNNLLIDGLIGAIIFLLLASLSVN WILKRLKVLEKTLNTKSPSYLLFGSLSTIIGLILAAIISIPFYGFIAPLNIFLPLIIMLL FGYLGFRVGTTRSEEWRRLLSFRNRRNTETENDQVLERKVGDHFRKYKLLDTSVIIDGRV QAIAKTGFIEGTMLVPNFVLHELQLISDSADSMKRMRGRRGLDILNAMQKDKDIHIEMYE GDFDDMTEVDSKLLKLAKLLDGIVMTNDFNLNKVAQFQNVPVLNINALANALKPDVIPGE NMTVTVIKSGSERQQGVAYLDDGTMVVVEDGKFYMNKPLEVIVTSALQTAAGRMIFAKPA HQQKAIRDKER >gi|225002487|gb|ACIZ01000092.1| GENE 4 3173 - 4069 360 298 aa, chain - ## HITS:1 COG:SP0141 KEGG:ns NR:ns ## COG: SP0141 COG1396 # Protein_GI_number: 15900079 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 7 194 8 186 287 63 29.0 4e-10 MPIHTTGQLFKEIRLERGLTLTDVAGDLSISTVSKFENGHSEISAEKLMLLLQKLGMDAT EFFEILSSKQSSKSSPVTLSQRAFDKHLMKLALEQDVDGLTHFRKQFTNYFQQSGIRLYK LREIIVSAVLIDTRDTHTLLTQADSKFVNDYLMARDVWYELEYSLYGDCVSFLQPQDFDQ LYTKFLTIHFSFRQRRDYINLFFQSFYNTAVALFYRQEYKKAIQTLNHLQDQQLPDNLFF IRLQLRLLKTVCQYKLTNSTETADELSELVKVIFKISPAFGRRWKSEFQFHEPVSDHT >gi|225002487|gb|ACIZ01000092.1| GENE 5 4211 - 5116 218 301 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 2 259 5 286 305 88 26 5e-17 MLKVEQLDKWFGRHQVLHKISFEIKPGHILGLIGANGAGKTTIMKAILGISSFAGHISLN DAPISMNEHKPLVNVGALIEYPGLYPYLTGREQLTLFANGTNRKAKVDAIVAALQLEQFV DVKAKKYSLGMRQKLGIALAFLNQPELVILDEPMNGLDPEATMTLRKLILQQKAQGVSFL ISSHILSELQKIVDDVVIIKQGHIVANATTEAILAANQRFLLIQTDHDHVAQRTLKQHGY EVQQTASALKVKLDSATSINALLKILWDHQLKINRITETQGDLESSLLAVLEDQNIDSEV L >gi|225002487|gb|ACIZ01000092.1| GENE 6 5118 - 5876 466 252 aa, chain + ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 250 1 255 256 106 32.0 5e-23 MITLLKQEIYKLMKRPSLVVFIILLFCFQLAVALIAMKYPNLLNIKATFVSNFFAPVLIV FYMIAVGSTQLSSEIQYGTLKTLLYRQYSFAQILLSKWLALLIGVILLYVSSACMSVIIK ILVLNNQFALNAHVWQLWSLNIVATFLTLLFLLCFVELIATLFENSTPAIIVGISAYFVI SIFNQLMFMMIDQHPWLKWNPVNMLNLGEQIGNQQLSRMTQLTLGQITVGYVVYIGCFLL AGLFIFKKRNSN >gi|225002487|gb|ACIZ01000092.1| GENE 7 6161 - 7477 940 438 aa, chain + ## HITS:1 COG:no KEGG:LC705_02328 NR:ns ## KEGG: LC705_02328 # Name: inlJ # Def: internalin J # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 438 1 438 438 771 100.0 0 MRLFGEEKTRYRLYKSGKLWLVALIGVFALAIGHQPNQVKASSMATRTATLAVQPATLGQ ELNLNNQQTMNADSPTSSNEVVVKCVDDAGNTLVKDMILQGEVGKVYTIKPATIANYQYT KLANGSAPINGTFSKGTLTVTLVYTKVPVAQRTVNVKYVDEHGNEIAPATTLIGTVGGSY TAVPANVKNYEYAHLAANSAPEKGSFTANPQTVTFVYTEKPAAQGSVTERFVDEAGKRIA PDKTLTGQVGDLYEARPIEISDYAFSRVAQGSAPAGNAFINGNVIVTFVYKQVPATQGSV TVRYVDENGNELAPNKVLTGQSGSAYTTGPITINGYRYVRLAADSAAASGTFPKDTGLVV SFVYTKPAIPVTPTTPETSTVPSTSSQSATTEVITPSAQRRLPNTNEKHEYGIAAVGLAL LSLMGLGSTQLFRKAKRQ >gi|225002487|gb|ACIZ01000092.1| GENE 8 7977 - 9605 1331 542 aa, chain + ## HITS:1 COG:SSO3012 KEGG:ns NR:ns ## COG: SSO3012 COG1132 # Protein_GI_number: 15899719 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Sulfolobus solfataricus # 21 529 134 646 863 89 21.0 2e-17 MPPIIKHVLKKRTASFIALILLAVAGTSLITGGTYLEGKLLDSLVYSHDRTLFVTLLLII LGIGLSRLIVSYFQNRIQILTRRRTILAMNRSILACLFTKKTLAILTWSPTTLSSCINDD VNEIVGFFADTMVRLIGIIVSTVTIALYVMKADAKIFGMMAIFVPIYFVIYVVFHQKIYA ISLRVKNKQNEYFTARNDFIGRYIEIKGAGSFQNEAKRLNRVEAGLFQTYIKDFWIRFTM SASQISIQLIFQTCFFLVGGFAVLNGQITIGFFSIILQYFSQLLNSVDQLLTVAMGTEAY RASLARMRQILSIAPDEKGTGQVNGIHSIEVKGFNVRRFSQQPSNDEMFYAKNMNVSFRT PGLYVISGDNGIGKTTFVRTITGIYQPEMTGDVLINGLNAAQVDLTKVRREQIGFLFQDV PSPHLTVGEYLADDCRNVAAFLNEEPKHFTQVFHSPNFNIFNLLDKKVDILSSGELQLVR LLKALSKEHATTYVLDEPTANIYPEIKADVIHLLQELAKTRLVIAITHDDQLAQIGTPIL MR >gi|225002487|gb|ACIZ01000092.1| GENE 9 9743 - 10123 305 126 aa, chain + ## HITS:1 COG:lin0909 KEGG:ns NR:ns ## COG: lin0909 COG1725 # Protein_GI_number: 16799981 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 122 3 126 130 91 37.0 4e-19 MTIDLASKVPLYQQIRDAIVNGIATGTLANGTVLPSIRALGNELGVNLHTVNKAYQALQQ EGFVVIQRGRGAVVQSRGAPEQAVENVLRPALEKVVAEAVARNLDRSTVHKMIDQLYDQL TGSEDR >gi|225002487|gb|ACIZ01000092.1| GENE 10 10120 - 11136 697 338 aa, chain + ## HITS:1 COG:lin0910 KEGG:ns NR:ns ## COG: lin0910 COG4194 # Protein_GI_number: 16799982 # Func_class: R General function prediction only # Function: Predicted membrane protein # Organism: Listeria innocua # 4 333 2 366 367 76 21.0 7e-14 MKAEILILVITWLVLVAIQAMLPWLSRRNVLFGVVYARTSIWQRPEAVTLRRRYLVASSL GAVVIAVLAGGAVAIWALSSVTLAWIQIAATLATVSLNGVLIIAGHRKSKQLMQQLHADQ ALTNHQVTIDLANLKPQTLVPAAAGLVLLPQCLLAIFLGFRQPSADTIVLLMALGIETLI LLTAFYLTRRARGTVRGNPDAEPRSGRVRNAILYYLLLIGFLSQSLLVLQLMLPAMSSDW QWLNVILTATLTLVSVMLLPMAYIAGTRKLDAKGKVLNDNQHWIGGVFYYNPGDPAIFVE KRIGIGFTLNMARPISWVLMGLTLVLILGIMLLAFWFD >gi|225002487|gb|ACIZ01000092.1| GENE 11 11150 - 11980 695 276 aa, chain + ## HITS:1 COG:BS_yhfC KEGG:ns NR:ns ## COG: BS_yhfC COG4377 # Protein_GI_number: 16078082 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 9 264 1 250 258 124 36.0 3e-28 MEKVVNNQMVSQSAVTMMLIQMLICLALPIGLAVWVIKRRSHPKKGATKIFFIGMGIFFL FAGVLEGPFRGIARQFQHTPWAYALYGALLAGVFEEVGRFLGFKFIQKRIPDKINDPETP FLYGLGHGGLEMILVGSMTVLSNYLFAMLINSGSIEKVLSQTPASSRSAITAVVKQLTGM SAWTVSLSLLERIMALAVQIALSVVVWLLIVKRKQWFWLLVPIGLHAFIDFPAALTQVGA LSVTVEEFLLVGQSLLIVGLVYWLWQRTMRNRQVSD >gi|225002487|gb|ACIZ01000092.1| GENE 12 12531 - 14024 1518 497 aa, chain + ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 6 491 7 485 491 567 58.0 1e-161 MADRPIRVRYAPSPTGHLHIGNARTALFNYLFARHNKGTLVLRIEDTDTKRNVADGEKSQ MDNLHWLGIDWDEGPDKGGDFGPYRQSERKDIYDKLIKQLVDKGFAYESYRTEEELKADR EAQKARHEMPHYEYEYEGMSEAEKADAIAAAKAKGLQPVIRFHIPTDKTYEWNDIVKGKI SIDANTLGGDFVIQKRDGMPTYNFAVVVDDHLMEISHVLRGDDHIANTPKQLAIYDAFGW EPPIFGHMTLIINGATGKKLSKRDETVLQFIEQYRELGYLPDAMFNFITLLGWSPVGEDE IFTKKEFIKQFDPKRLSKSPARFDQKKLEWVNNQYIKAKQKTNPNELMSLSLANLIEDGK IQSDPDPKTIEWARQLISLYTDQMSYTAQISKLADIFFDKATDLTDDERKELADDNAKPV IEAFAKKIRALDTFDAYSIGHIVNEVKQETQVKGRKLYMPIRIAATLRMHGPQLAETIEL MGRDQVLKNVEIVTSQL >gi|225002487|gb|ACIZ01000092.1| GENE 13 14271 - 14381 62 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRKRSMSKVGYFLAGIVTGLVTTGLFRLLSGWLFS >gi|225002487|gb|ACIZ01000092.1| GENE 14 14657 - 15226 204 189 aa, chain + ## HITS:1 COG:no KEGG:LC705_02321 NR:ns ## KEGG: LC705_02321 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 189 2 190 190 380 100.0 1e-104 MLPSRQPPSPENSVTTSSKYPAFALRYIPGSAAAGCFAGKAGLMLTGQRMLKLLVPTFYY ILPRFSRFDGFDHHFCLLGQPEVAVLTGFDTHGRHVVRVAYPQIAEPLQIAPGQVFNALR FRHEPDACADTDVLTICVASQTKVTGVGYPRRPLQTKRMARDLTWLGEAVITVHPKLSYR NLDDTNRLA >gi|225002487|gb|ACIZ01000092.1| GENE 15 15349 - 16743 1162 464 aa, chain + ## HITS:1 COG:ML1103 KEGG:ns NR:ns ## COG: ML1103 COG0277 # Protein_GI_number: 15827544 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Mycobacterium leprae # 12 463 3 453 453 255 38.0 1e-67 MAIFTAYDHAEILTALQDAAPHAEIHTDDKVAREHSANGNAQQEIAGHILAYIAVGDVPD IQGVLKVARQYHIPVVPQGADTSTVIGADGLDGSIILSTARMKRIKEISKGDLLAVVEPG VINGDLDQAARKQGLFYAPDPGSKPISSIGGNVATNAGGMSTVKYGTTSDNVLGLKVVLA DGREIKLGGRTYKHAFSYDLTHLFVGSEGTLGIITEITVKLNPIPVGTPVVGVAYFDNMT ALAKGVEDLRLSGIYPVTLEALDGLTVAALDRYEGTHYAEGAEAMLIFRLDTGGEASLKI AEKILTADHAKNIQVTSDPAESAAIIKLRQDMLPAVFANGQHIMEDMAVPLSKLPEMMDY IAAVAKELNVEIYTAGHAGDGNVHPTVIWPADQVEPPKEALQAIRLMFRKALALGGTISG EHAVGMSKNQWNNEELGFAVDELQHRIKDLFDPLNILNPKRKID >gi|225002487|gb|ACIZ01000092.1| GENE 16 16880 - 18286 1235 468 aa, chain + ## HITS:1 COG:SP0591 KEGG:ns NR:ns ## COG: SP0591 COG0215 # Protein_GI_number: 15900500 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 467 1 446 447 540 58.0 1e-153 MLTLYNTMSRQKEPFKPLHPGEIRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGFK VTYVSNFTDVDDKIITAAHKTGEAPLDLAQRFIDAFMEDTTALGIEPATAHPRASQMIPD IVDFVQDLIAKGYAYAVDGDVYYRARKFKHYGELSHQNVDELEEGASQHITQEELDKKED PIDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTQLLGDTFDIHGGGQDLEFPHHEN EIAQSEAKTGKQFVRYWMHNGFVTIGEDDQKMSKSLGNFITVHDILKTVDPQVLRFFMAG TQYRMPIRYSEANLKNAANSLNRLKIARENLVYRRANAADGVDAQITAELKTLKDRFIAA MDDDVNVQNGLTVLFDLAKLLNEYANEDTVKQESVNDLLNQYDAWLQIFGVVFTDPTNLD ADIDALVKARDAARAAKDFAKSDEIRDQLAAQGIILEDTPQGTRWRRK >gi|225002487|gb|ACIZ01000092.1| GENE 17 18283 - 18711 317 142 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 4 128 9 133 141 126 51 2e-28 MTFDPKQLNGIALAYLGDAVYEVYIREHLLKRGLVRPAALQRAAKDFVSAKAQAALIAGM QTADLLSAEETEVFKHGRNAKSYTHAKHTDVVTYRISTGFEALFGYLHLEGRDNRVAELA AWCIQYVEEGKTGHGKTAASTK >gi|225002487|gb|ACIZ01000092.1| GENE 18 18683 - 19465 603 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 16 258 7 248 255 236 50 1e-61 MAKQPQAPNNEHEPDEFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKK KILVATAPKQKLDLMSDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLED PHNLGSILRTADASGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILK DRGMWIFGTAMDGQDYRQWDAKGSTALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLN ASVAAGILMYQAFASRHEGK >gi|225002487|gb|ACIZ01000092.1| GENE 19 19466 - 20005 508 179 aa, chain + ## HITS:1 COG:lin0274 KEGG:ns NR:ns ## COG: lin0274 COG3688 # Protein_GI_number: 16799351 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein containing a PIN domain # Organism: Listeria innocua # 3 169 2 167 170 137 44.0 9e-33 MREHIMIVDGYNVIGNWPELAKLKAEDHFDVARDRLLDILAEYRSHENAKMIVVFDAMYV PGIGKSYAKWDLQVVFTKEDETADSYIERLAQEMNSPLVQLVVVTSDQAEQWTVFSRGAL RISSRDFLKEVQRSEREFNHDTSSYAAHLARRNSPWNNDQLFLLDKMRRHLERRPKPKE >gi|225002487|gb|ACIZ01000092.1| GENE 20 20234 - 21289 691 351 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900201|ref|NP_344805.1| hypothetical protein SP_0267 [Streptococcus pneumoniae TIGR4] # 7 349 2 349 349 270 42 7e-72 MVDIEHLQFGLETFGDIVANEDGSLQTAAASIRQIVREGQLADELGIQVFGVGEHHRPDY SVSSPETVLAAISTVTKQIKLATAVTVLSSDDPVRVYERFATLDALSNGRAQVMLGRGSF TESFPLFGYDLTDYDDLFNEKLGLYDALRNEKAVTWSGKFRAALKNQEVYPKTENGKLET YIGIGGSPESVIRAVNFSYKVIIAIIGGQASRFKPYIQLYHAAAKELGKPEFPIAVHSHG FIADDEDEAIEVAFKNIKANFDRIGLTRGWAPMSREQFDGETKVGSFYVGNPETVARRMA ETIDLLDLGRFDLVYGAGNQTAAQRERMIELYGTKVIPRVKEILAEKAAVK >gi|225002487|gb|ACIZ01000092.1| GENE 21 21289 - 21972 702 227 aa, chain + ## HITS:1 COG:Cgl2780 KEGG:ns NR:ns ## COG: Cgl2780 COG2085 # Protein_GI_number: 19554030 # Func_class: R General function prediction only # Function: Predicted dinucleotide-binding enzymes # Organism: Corynebacterium glutamicum # 6 199 8 196 208 140 39.0 2e-33 MAIQRIGILGAGKVGIVLAGLALDAGYTVRISGSGAVKKIALTIKTLVPDAIASENAEVV ANSDLIILAIPLSRYKNIDADLLKGHLVIDAMNYWWETDGIREEVLDPTTTSSEQVQAYF KGAKIVKTFNHMGYHNLQEEARPKGNPKRKALFVTGDDPAAVDQVAAFVDRMGFDTVVHN RLADGIMTEPGSPLFGASLRYAELKDIIEHFDQTDFGKQIAAKVHTH >gi|225002487|gb|ACIZ01000092.1| GENE 22 22484 - 23599 802 371 aa, chain + ## HITS:1 COG:no KEGG:LGG_02320 NR:ns ## KEGG: LGG_02320 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 371 1 371 371 658 97.0 0 MKQLSAFFQKQVMLNQKNLVGELFMVFLVIGLFWVAKFQQIADLKIETFRIQQSVQSSYL RYDAQSYSKTSKQGKMVQALNEQLSGTGKIDSGLLVHDASMILNGQVELAQAQLKSYSLD FAGASGLLIPTKEAVTGKLAVARKLQQVQGSPRVAIKTASDYGALLFQAIAVCAPFLIAY LVGDSWLVELEHQSVLRNMPVHFLGKMAAHVKANFQLSIGLFFVLPVVGLILLGIVIGFG DWNYPTAFTLINKITTVPSWLAGLLIAVYAVVLTVLMSVVAIWLNRLIGSFYATLLALVV VLTIVTFSPSLPAVFYLTPLPYLSIANVYSGHFLINDHLPIGWVTGLGMMLIWLMGILFV ISRWGRAKNES >gi|225002487|gb|ACIZ01000092.1| GENE 23 23589 - 24827 559 412 aa, chain + ## HITS:1 COG:no KEGG:LC705_02310 NR:ns ## KEGG: LC705_02310 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 412 4 415 415 761 100.0 0 MSRNRSYIAFQIKQNLLSKKNWGACLIFLLWSFWFCYQYLPANGTLENFSRQEVTAKYQK NAKFMKSFNPAFPNYPTIANAGTYVPQFMKDERAQLKAAGQGKYNQVAASMADELALTDR LVLQGQPWLSYPLQYYSDPTVVRDAGSGNQNRNGHYWNLEARTRLRQYAHMPNNSVTAAM INQQTALQQLQRALFYGLALSLLLVTAMISTDLVTRDRKKQSILKNFPLTTWAMLNDKSL SALLMSGGLLLGFLAILLPFNMIKFGLGSLSLPIPVYEGLTFSTISLGQFMMEAFILLLL SVWMIIRLQVVLQVILKSEFASLAVTILLIVSESLYFLPGLVAINHNSLYLLPSYFNIGR LVVGFQNFRYETTQMTFVFGLIMILSVIVVLEVVIFCLTHKRHPKKREVASC >gi|225002487|gb|ACIZ01000092.1| GENE 24 24821 - 25696 674 291 aa, chain + ## HITS:1 COG:BS_ydbJ KEGG:ns NR:ns ## COG: BS_ydbJ COG1131 # Protein_GI_number: 16077516 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus subtilis # 15 284 18 293 308 123 28.0 4e-28 MLKLNDIGLSFANKKHVLDDVTLTLNQKEIVGLVAPNGTGKTTLLNVIMNNLKPDRGYVE VDGLRYESNQAIKAIYQKICAFPLESELFGELTGYEHLKLYRNMWQSQITLDALIDGLKM RSYITQKVSTYSLGMKQRLCFAMVVASDTPIMLLDEAMNGLDPENIALISGQIQQLREDG KLVIMVSHLLDNLQSLADRILFLRAGKIVKQINMHESQPNFLKMRQTSQLLTDVSADAIL DTDRDRVLIDLTKLDKGTREKLVLGLVTHDVPYSVAPLSLADEFRLIFQKA >gi|225002487|gb|ACIZ01000092.1| GENE 25 25850 - 26035 145 61 aa, chain + ## HITS:1 COG:no KEGG:LGG_02317 NR:ns ## KEGG: LGG_02317 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 61 1 61 61 82 96.0 6e-15 MTFLEGLHRVLIVLTLAMAGYIGYVRLVPDKKFSLKRFVLVGVLSLLLIWATWYVGTLVN Q >gi|225002487|gb|ACIZ01000092.1| GENE 26 26244 - 27128 402 294 aa, chain - ## HITS:1 COG:no KEGG:LC705_02307 NR:ns ## KEGG: LC705_02307 # Name: not_defined # Def: transcriptional regulator xre family # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 294 1 294 294 581 100.0 1e-164 MFADQFTCGNLFRQIRERRHLKISDVQGPLHKTSVSFFETKDANIRLFSLMEILKPTMTE PQEFFELIDQTHSQLRRFFTELNTLYESLDLAGLQMLLTDYHGIKRSETPQYMLKLIVMS CIAKVKEQSPIFSAEDEECIQQFLLTEGRWFHFEYLVYANLCHSLSNCVNDRLLRHMVNK YQEFHLSRYDQAFVGTFYNISARYLKDADYDRALSMLDIVADFPVKNTALYLRHHVAFIR LAVPILKCQDQEAKKKLATLLMATEIIDPKLYKTNMAWMKSLNLDPEAILNNIT >gi|225002487|gb|ACIZ01000092.1| GENE 27 27373 - 27933 454 186 aa, chain + ## HITS:1 COG:no KEGG:LC705_02306 NR:ns ## KEGG: LC705_02306 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 186 1 186 186 340 100.0 2e-92 MEFQSKWKRTPKFLALLAIFTTTLFVSLMLTGAKPVNAATKADEITVNSATPKEQAVAKE LEKMFVDGDIENLNIDYLIAKYGKDEIQATERFIGISENESRIFPTEHRIVQRDLADIGN CMLGKLGEEIRSMVNVNTIVAYIDKKLWLEAAKAIVAKVAAQGIKRNAAVMATVLAWYAV QCGLGW >gi|225002487|gb|ACIZ01000092.1| GENE 28 27915 - 28121 76 68 aa, chain + ## HITS:1 COG:no KEGG:LGG_02314 NR:ns ## KEGG: LGG_02314 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 68 6 73 73 112 100.0 5e-24 MRSGVVNVKNKAKTYLGGFLLWLALMLFNIGYDLLFLGELYWTQYFKLTGYLMIAVLIGS VYFKDRSE >gi|225002487|gb|ACIZ01000092.1| GENE 29 28375 - 29166 518 263 aa, chain - ## HITS:1 COG:SP0619 KEGG:ns NR:ns ## COG: SP0619 COG0639 # Protein_GI_number: 15900527 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Streptococcus pneumoniae TIGR4 # 4 257 5 240 277 143 32.0 4e-34 MTTIAVFSDIHGNLAALEAVYADAIQHGSGAYWFLGDLFGPGPDVQPLWEELQTINPTIK IRGNWEDFLVTTWSGKDRLSTTQKKIEAYILNHLHDPAKICATLASWPLHQEVTVNGVQI GLSHHLPANNSGDTLSVRAEGSALSALFSGPRSTLDLAIYAHIHHPTMRYVDLSRPIQTA DAFDYAKADERLVLNLGSVGLPFDKPTRRYQEWRAEYLLLEVTDDGAINPQFRRISYDLQ REFKQALAMDMPFVENYRHNFYI >gi|225002487|gb|ACIZ01000092.1| GENE 30 29317 - 29814 376 165 aa, chain - ## HITS:1 COG:no KEGG:LC705_02303 NR:ns ## KEGG: LC705_02303 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 165 1 165 165 254 100.0 9e-67 MENKAKVINSGKIIVSHIVFPLVLAIAVGITTSGSFVYQAVNHEEPVVVQAASYPTPAKR GITLYGLGNDTVYVYYSASQMAAVKAASNTQANARLAFAAAFGAINQYAGLLATAALIRT NTQFNNFREAINSAISKKKGLQLQYNTTFDDGNNSATWGASFVVK >gi|225002487|gb|ACIZ01000092.1| GENE 31 30259 - 31236 823 325 aa, chain - ## HITS:1 COG:lin2790 KEGG:ns NR:ns ## COG: lin2790 COG0142 # Protein_GI_number: 16801851 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Listeria innocua # 1 323 1 324 326 304 47.0 2e-82 MKIHPMWHEYPTLAPELASALTLIEKQITTNNTPVAKAIMEMINGGGKLLRPAYCLLFSR FQDTDREKMIALAAAIETLHTATLIHDDIIDKSPTRRNQVTIQKQFGPDTAVYAGDYLFV VCFKLLAHYASSLRSIQQDSGSMEKILKGELDQMATRYQTQITINDYLKQVSGKTGQLFA LSCFVGAYESGGTTNFAKTAEKIGMNIGIAFQLLDDILDYTSDGETLGKPVYEDVRSGVY SAPLILAMQRDRQAFLPLLAKKEHISDTEMIQLRDLVIKYEGVKQAYTMAQQRTELATAG LQKLPAGAARDDLIRLTESLLKRKS >gi|225002487|gb|ACIZ01000092.1| GENE 32 31211 - 31798 492 195 aa, chain - ## HITS:1 COG:lin2789 KEGG:ns NR:ns ## COG: lin2789 COG4769 # Protein_GI_number: 16801850 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 8 172 3 167 180 210 67.0 1e-54 MSVYKADRTRQYIYIALLCAQGVIIGLLERMIPFPFAFAPGAKLGLANLITIISLFTMSI PDSFILMCLRLLLTTLLGGTLSTFLYSGAGAVLSWFGMLLIKQLGEKRVSMIGISAAGGI LHNVGQLLMASFIAQSWTVMLYLPILAFMGILAGIAVGIAANFLFEHIDILRRLRYDRTK RRKKGATHENSSHVA >gi|225002487|gb|ACIZ01000092.1| GENE 33 31795 - 32238 451 147 aa, chain - ## HITS:1 COG:lin0431 KEGG:ns NR:ns ## COG: lin0431 COG5341 # Protein_GI_number: 16799508 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 139 2 129 140 109 40.0 1e-24 MKRPNTFKRYLKMIRPFDWIIVGGLFIAAFIPYLIFGIHENQQQATASQQVLTAVVTHDG HEVYRKRLTGHTGTSHFTYRDKDGDWNKIEVKGAGIAITEANCQDQVCVRRGRITKPGQT IVCLPHKLLIAIKSNKGDSNTGGMVTE >gi|225002487|gb|ACIZ01000092.1| GENE 34 32411 - 34309 1699 632 aa, chain - ## HITS:1 COG:lin2787 KEGG:ns NR:ns ## COG: lin2787 COG1252 # Protein_GI_number: 16801848 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Listeria innocua # 1 626 1 625 628 602 50.0 1e-172 MAKTNIVVVGAGFAGVYATKHLAKHYKRNKDVTITLIDRHSYFTYVTELHEIAADRVPED AIQYDLQRLFNRRKNVKLVTDNVTGIDRDKKEVVTENGRFPYDYVILGIGSQPNDFGTPS VAEHGFTLGKWEDAIRLKRHIEDVVRRGSEEHDPAKRKALLSIVIVGSGFTGTETIGELR DWRDTLAKQYKLDPNEIQFSLMEMAPTIMNMLDRSDANKAERYMEKRGIKVMKNTGVVGV HADHVDLKDGSTFPTCTLVWTAGVKATDQAKDFGLKQGRAGRILVKNNMESQDDPSIYVV GDVSLVDQDGTGKGQPQIVQGAEATAHTALTNIEAKLENKEQVEYKANYSGFMVSLGSKY GVANIMGWLHLSGFFAMLMKHLVNMLYFVQIYSGYYLFEYFMHEFFRTRNGRNMFRGHLS RQGNVLWTLPARLTLGAMWLIDCWPKIQGKESWFIDKLRLPFSWLQPAATSGASAAGADA TSAASGAAAGAAKATKTVFSLSYQYGNDPMMVFDKMPNWYYSITKTLIPNQQVAFFMQKA MTIMEILIGLALVAGLFTWLTSAATIAFVGVFCLSGMFYWVNIWMIPMAFACMNGSGRAF GLDKWVVPYLQKVFGKWRYGTPRSLYGTDALK >gi|225002487|gb|ACIZ01000092.1| GENE 35 34597 - 35505 1078 302 aa, chain + ## HITS:1 COG:lin2786 KEGG:ns NR:ns ## COG: lin2786 COG4939 # Protein_GI_number: 16801847 # Func_class: S Function unknown # Function: Major membrane immunogen, membrane-anchored lipoprotein # Organism: Listeria innocua # 1 300 1 296 299 236 54.0 6e-62 MKLSKVVTGTAVVALSTLVLSACSSSSSSKNSSSSKASSSKVVKKSSTQKQVAGGPLKDG TYKLNETGYDHGYKVEMAMTVKDGKITSTKYDYVDKNGKSKTKDASYEKAMKAKVKVGPK EYIPELNKSFKKNGTNVGAIDVISGATDSSMTFKNYAQQLVQAAQAGDTKPIEVNNTGKM KDGTYTLEEKNYFNGYRVTFSITVKDGKITESNYDNVNKDGKSKTQDTKYEANMKKVNKV GPKEYIPELNKSLVAKQSPAKVDVVSGATHSSDTFILYADQLVNAAQNGNTNKIEVDNIV YK >gi|225002487|gb|ACIZ01000092.1| GENE 36 36458 - 36773 264 105 aa, chain + ## HITS:1 COG:no KEGG:LGG_02305 NR:ns ## KEGG: LGG_02305 # Name: is61 # Def: transposase IS605 family protein # Organism: L.rhamnosus # Pathway: not_defined # 1 104 1 104 393 208 100.0 5e-53 MIKTHKIKLYPNATMRKELEKLFDYRRFVWNQGLEIWNDMYDASLVMMDKSIRPNERKVR DELVANKADWQFERSARVLQLAVNDLSKAWANYLNPKMPNHDKPK Prediction of potential genes in microbial genomes Time: Wed May 25 20:09:37 2011 Seq name: gi|225002486|gb|ACIZ01000093.1| Lactobacillus rhamnosus LMS2-1 contig00101, whole genome shotgun sequence Length of sequence - 25202 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 13, operones - 6 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 22 - 1086 1027 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 2 2 Op 1 . + CDS 1410 - 2348 876 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 3 2 Op 2 . + CDS 2345 - 3304 697 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase + Prom 3324 - 3383 4.1 4 3 Op 1 . + CDS 3602 - 3751 266 ## PROTEIN SUPPORTED gi|199598556|ref|ZP_03211973.1| Ribosomal protein L33 5 3 Op 2 . + CDS 3771 - 3941 267 ## LGG_02300 preprotein translocase subunit SecE + Prom 3963 - 4022 3.9 6 4 Op 1 . + CDS 4043 - 4597 633 ## COG0250 Transcription antiterminator 7 4 Op 2 . + CDS 4607 - 5452 613 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 5514 - 5555 7.0 + Prom 5478 - 5537 1.8 8 5 Tu 1 . + CDS 5627 - 6070 440 ## COG3613 Nucleoside 2-deoxyribosyltransferase + Term 6077 - 6134 -0.1 + Prom 6289 - 6348 3.2 9 6 Op 1 . + CDS 6368 - 8614 1508 ## COG1372 Intein/homing endonuclease 10 6 Op 2 . + CDS 8637 - 9029 403 ## LGG_02295 hypothetical protein 11 6 Op 3 . + CDS 9026 - 9568 471 ## LC705_02284 membrane protein 12 6 Op 4 . + CDS 9584 - 10120 505 ## COG2096 Uncharacterized conserved protein + Term 10166 - 10207 4.1 - Term 10141 - 10204 10.8 13 7 Tu 1 . - CDS 10277 - 11728 1082 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 14 8 Tu 1 . + CDS 12469 - 15099 1661 ## COG0474 Cation transport ATPase + Prom 15120 - 15179 5.9 15 9 Op 1 55/0.000 + CDS 15258 - 15683 699 ## PROTEIN SUPPORTED gi|199599565|ref|ZP_03212950.1| 50S ribosomal protein L11 + Prom 15689 - 15748 2.4 16 9 Op 2 . + CDS 15780 - 16469 1155 ## PROTEIN SUPPORTED gi|199599566|ref|ZP_03212951.1| Ribosomal protein L1 + Term 16491 - 16525 4.0 + Prom 16480 - 16539 3.9 17 10 Tu 1 . + CDS 16570 - 17115 381 ## COG3981 Predicted acetyltransferase + Prom 17197 - 17256 4.0 18 11 Tu 1 . + CDS 17282 - 18655 1317 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 18716 - 18759 6.1 + Prom 19125 - 19184 4.7 19 12 Op 1 25/0.000 + CDS 19205 - 20758 974 ## COG0438 Glycosyltransferase 20 12 Op 2 . + CDS 20755 - 22251 1058 ## COG0438 Glycosyltransferase + Prom 22296 - 22355 1.9 21 13 Tu 1 . + CDS 22401 - 25200 2240 ## LC705_02274 fibrinogen-binding protein Predicted protein(s) >gi|225002486|gb|ACIZ01000093.1| GENE 1 22 - 1086 1027 354 aa, chain + ## HITS:1 COG:lin2785 KEGG:ns NR:ns ## COG: lin2785 COG1477 # Protein_GI_number: 16801846 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Listeria innocua # 1 354 1 359 360 393 57.0 1e-109 MKKRLIVVILMLLALVATGCSSQSTAKRELVSGDPYSDTQFLMGTVVMIKIYDKGKQGAL DAAFARVQQLADELTVNQKGSEVDAVNKNAGVKPVHVTPSVYRVIEAAKHYSENSNGSFD LAIGPITSLWHIGFADARKPAQSEIDAKLPLVHYQDVALNKKQQTVYLKKKGMAIDLGGI AKGFITDEVVKTLKKQHVTTAIIDLGGNIFVMGKSPKSTKKDWSVGIQDPKKPRGTAIGT LPASNKTIVTSGIYERYLKVDGKVYMHLMNPKTGYPFDNELMGVSIITKKSVDGDALSTA TFDKGLVDGMAYIEKLNYADAIFVTKDKKVYVSSGLKDKFKLLKDSGYTLAKLK >gi|225002486|gb|ACIZ01000093.1| GENE 2 1410 - 2348 876 312 aa, chain + ## HITS:1 COG:lin2784 KEGG:ns NR:ns ## COG: lin2784 COG1575 # Protein_GI_number: 16801845 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Listeria innocua # 1 312 1 315 319 243 46.0 3e-64 MSLPIFLELVEIRTKLASVLPFAIGTLFAVTYFHAFDWLNTLLFFTAMLIFDMMTTALNN LMDYQKAKDAHYQQEVNVIGRAQLDPGMVAKLILVMLVVASLLGVVLVVRTDWLLLLMGM ACFAIGILYTWGPLPLSRLPLGEIFSGIVMGLGIPVIATYVNIAPGRLLALDFGWPTVVL RGDFIAIVALGLACITPMATIANIMLANNMSDIEEDQRNHRHTLPMYLGKWWSPRVYALL AYAGFLAVILGVIFGALPIWTLVVELAWPLVIRNVHRFIRDPSKQRTFHTAVINLVLENG LLVVGLGMGVVL >gi|225002486|gb|ACIZ01000093.1| GENE 3 2345 - 3304 697 319 aa, chain + ## HITS:1 COG:lin2784 KEGG:ns NR:ns ## COG: lin2784 COG1575 # Protein_GI_number: 16801845 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Listeria innocua # 13 317 6 313 319 174 33.0 2e-43 MTQSYHRLTWPLFLEFIRLPAKAASMLPLVLGISYAAWAFHQFSWINSLIYAAAQLAIAL FVTGFNNVQDYFKAKDRSYQQSQNIIGREHLSPWGMLALTIFILLISVVLGIILVMRTNL SLLVIGAVGVGVAILYTFGPVPLSRLPLGEVLAGFVEGYGTFVIAVFINMTLPGPLDLTL DRRTFTFALNLGWLLQLLIAVLPVIILNAAVMFADNIADMAQDIKNQRFTLPYYLGRTRA LRWYRLIPFCTFVALLLGVLTRSLPWWSLLVMLTWPVVKKNTRRYTKAPSKDKTFIFTIQ SLMIVGGALLLTLWLGIFF >gi|225002486|gb|ACIZ01000093.1| GENE 4 3602 - 3751 266 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598556|ref|ZP_03211973.1| Ribosomal protein L33 [Lactobacillus rhamnosus HN001] # 1 49 1 49 49 107 100 1e-22 MSVKKVALACSVCGQRNYFVPENPKRTERLTLKKFCKHCGRVTVHQETK >gi|225002486|gb|ACIZ01000093.1| GENE 5 3771 - 3941 267 56 aa, chain + ## HITS:1 COG:no KEGG:LGG_02300 NR:ns ## KEGG: LGG_02300 # Name: secE # Def: preprotein translocase subunit SecE # Organism: L.rhamnosus # Pathway: Protein export [PATH:lrh03060]; Bacterial secretion system [PATH:lrh03070] # 1 56 1 56 56 82 100.0 4e-15 MKFIKSVFAEMKAVTWPTAQQTRRDTFTVIMTSIIFAIYFAGVDWVINAVFQAFLY >gi|225002486|gb|ACIZ01000093.1| GENE 6 4043 - 4597 633 184 aa, chain + ## HITS:1 COG:SA0494 KEGG:ns NR:ns ## COG: SA0494 COG0250 # Protein_GI_number: 15926213 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Staphylococcus aureus N315 # 1 184 1 182 182 214 61.0 9e-56 MAETVTSAEKRWYVLHTYSGYENKVKTNLEQRTSSMNMDDYIFRVVVPEEEEHEQKNGKE KIEMKKTFPGYVLVEMVMTDQSWFVVRNTPGVTGFVGSHGAGSKPAPLLPEEVASVLHSM GMSTRHQDVEFDVGEPVTIIDGAFTGMHGKVTAVDKDKMKLKVVTEMFDREVTAELDFDQ VDKL >gi|225002486|gb|ACIZ01000093.1| GENE 7 4607 - 5452 613 281 aa, chain + ## HITS:1 COG:lin0949 KEGG:ns NR:ns ## COG: lin0949 COG4814 # Protein_GI_number: 16800018 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 32 279 47 298 300 151 33.0 1e-36 MSSWFWLVIAVGTVVIAGGLADFILLGRPGYAPVPLVMDATPTLFIPGHLGTRYSFGHML WRMQRRYGLSKDVVAIVAPDGRVRLRGRLNLNHHAAVQVLFTDKTVRPAAQLRGLNHVIT ALQAQQAFSQLNLIGHSMGGVTAVLYLLSKPAVPVANLVTIAAPMNDLEVAQRSPILNWS LTRQGPEHTAPIYQQFQRTIDNLPSDLRWLNIAGDLMLGGRHDGEVAINSSFAVRYLVKD RIKDYTEVVIRGPRAAHSLLHENRLVDHDIVEYLWQQQRDF >gi|225002486|gb|ACIZ01000093.1| GENE 8 5627 - 6070 440 147 aa, chain + ## HITS:1 COG:L92464 KEGG:ns NR:ns ## COG: L92464 COG3613 # Protein_GI_number: 15672475 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside 2-deoxyribosyltransferase # Organism: Lactococcus lactis # 4 144 11 156 159 84 32.0 8e-17 MAQVYLAAPFFDPAQTKRLNQVLAALNENESVSGIFSPRDDTNKAGLTENSPAWQRQVFG EDIRGLHQATVMVAILDYIGEDPDPGTAFDIGYAYAHHMPIVALQLTDMKMNLMLAGSIT CFVTDIAELKTLDLDHVLVRPYVGPVF >gi|225002486|gb|ACIZ01000093.1| GENE 9 6368 - 8614 1508 748 aa, chain + ## HITS:1 COG:all4035 KEGG:ns NR:ns ## COG: all4035 COG1372 # Protein_GI_number: 17231527 # Func_class: L Replication, recombination and repair # Function: Intein/homing endonuclease # Organism: Nostoc sp. PCC 7120 # 36 326 27 275 1172 89 26.0 2e-17 MQVMMKPITLAPEFIAEVKKEIKPHWGELGWVTYKRTYARWLPNEERTENWDETVKRVVE GNINLDPRLHTADPDPKVVTALQKEARNLFKLIYGLAGTPSGRNLWISGTDYQKRNGDAL NNCWFIAIRPQPYGDSHIVPTDFSADQPAVSMPYSFMFDELMKGGGVGFSVTKDNIAKLP PVASAVDLTIVIDRRSASYEASLKMGAVDRQAWEQAHATERNDRYVLPDTREGWVLANAK VIDHHFAATNPSGQTKLVLDITNIRPKGARIHGFGGTASGPMPLVEMLQDINNVLNARVG KHLTAVDATDIGNLIGKTVVAGNVRRSAEMSLGSADDDAFITMKQDQKQLYHHRWASNNS VAIDTQFEAYAPIATAIAKNGEPGIVNLDLSRHYGRIVDGENAANDPDVEGTNPCGEISL ANGEPCNLFEVFPVVAVQQGWKLKQAFTLAARYAKRVTFSNYDWQVSRDIIKKNRRIGIS MSGIQDWFLDDFGHRVVSGFEPVVDPHTGKMVEKPIYDPEIKQAVDGLYRTVVNADKAYS EALGCEPSRKHTTVKPSGTVAKLAGVSEGMHFHYAGYLIQRIRFQANDPLLPALKACGYH IEPDVYTKNTMVVEFPIRAAHADDPAFASAGTVSIAEQIATQAFLQTYWSDNAVSCTVTF QPEEADQIADLLSQYRHVIKSTSMLPYVGAGFKQAPKEPIDVQTYKQKCQQIHGSVAAVF AAQNADHDQKDLGLVDQTDCAGGACPIK >gi|225002486|gb|ACIZ01000093.1| GENE 10 8637 - 9029 403 130 aa, chain + ## HITS:1 COG:no KEGG:LGG_02295 NR:ns ## KEGG: LGG_02295 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 130 1 130 130 184 100.0 7e-46 MLKKVLRSLVVFFTAMLVLTGCSSSASSTAKSSSKPNQIVVTYQLKENGKAFANKKITQP KKSVVMTGLKKGWKVKASKGFITEIAGKKQNVAKKTYWLYTINGKMAKKGASQQPVKNHD KVVFDLSVTK >gi|225002486|gb|ACIZ01000093.1| GENE 11 9026 - 9568 471 180 aa, chain + ## HITS:1 COG:no KEGG:LC705_02284 NR:ns ## KEGG: LC705_02284 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 180 1 180 180 273 100.0 2e-72 MKLPVAAKKPSPVRAVALLGLLTALCTVLRIIKVPIPNVQPVTDILMVTTLLLGFRWGIA LTMSTLVVSNLILGFGLWTLPQIVAYAMCLVVVQVSVTLIPLIRLTLWIQIGIAGLLGYL YGFIVSLGMAVIGSLNGLGFWAYYLSGLLFDTYHVIGNLVFYPIVVLVLQQGLKRFSHQG >gi|225002486|gb|ACIZ01000093.1| GENE 12 9584 - 10120 505 178 aa, chain + ## HITS:1 COG:BS_yvqK KEGG:ns NR:ns ## COG: BS_yvqK COG2096 # Protein_GI_number: 16080368 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 176 1 177 193 119 39.0 4e-27 MKLYTKVGDHGATKQINGKKVPKYDPQIVALGDLDELDSWLGYVAAQAQATPGFAWLTEA LQARQRELYELLADIAVPRHQTITEAHVKALEDAIDQMMAAVPHITAFVLPGGHPLAAAL QYGRAVARRAERSLDQLAAKDDTLSAVTLQYSNRLSDYLFALARYVNFKAGVAEVKSK >gi|225002486|gb|ACIZ01000093.1| GENE 13 10277 - 11728 1082 483 aa, chain - ## HITS:1 COG:SPy0902 KEGG:ns NR:ns ## COG: SPy0902 COG0154 # Protein_GI_number: 15674924 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Streptococcus pyogenes M1 GAS # 5 478 6 482 484 384 49.0 1e-106 MISSALAQAAAVRAGAVTSGDLIDMTAKKLTTRNPQLNAVTWTRFDAAKHEAAALTDTGQ PFFGVPLFLKGLGQSLAGAPETGGSRLFKDAKATRTNNFVQALQRLGFIIVGQSNVPEFG FKNITDAALYGPARNPWNLAYSPGGSSGGAAALVAAGISPLAAGSDGGGSIRIPASFSGL IGLKPTRGRVPTGPGEWRGWQGASINFALTRTMADTEALLRGLATTQLAAPFIAPPLRLD QVNDTRPLRIAYTTQSPVGTPVSSTAITAVEKAVDALRAAGHTVTEAAPDVDGVALMQAY YLMNGGETAAMFQAYTDQTGRTVTPNDIELITWAIYQAGLHTTAADYSRSLAIWDRAAEA YSRFHESYDLLLTPTTAKTAPRIDAALQSPAIIKKMHHAAELDPSEQQTLIWDLFEPSLT YSPFTQQANLTGAPAISLPTAISDEGLPLGIQFTAAKGREDQLLRIGYWFEQHHLLKMLP VAE >gi|225002486|gb|ACIZ01000093.1| GENE 14 12469 - 15099 1661 876 aa, chain + ## HITS:1 COG:lin2836 KEGG:ns NR:ns ## COG: lin2836 COG0474 # Protein_GI_number: 16801896 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 20 876 13 856 856 794 47.0 0 MFNKTISRRDASTQEKTAALTRYSQQEPQAIFAALKTQEAGLSSQEAAERLEQDGPNTVV TQHPRPWYLILFAAFNEPFVWVLLLLCAVSTMTADYDGARMMGLMIILSVSIHFWQEYRS QKESHALAALIANTTAITRAGETKEHPMDEVVPGDIVQLATGDMIPADAYLVATHDLFVN QSSFTGEAMPVEKKAGAANLSDKQSLFDAPNLVFMGTDVISGSGTAVILKTGDATYFGDM ASQISDKPAPTSFEQGMRAISRVLISMMLVLVPVVFVINGITKHDWSQAFFFAIAVAVGL TPEMLPMIVNSNLAKGALAMSKRKVIVKRLHAIQNLGAIDTLFTDKTGTITEDRVVVMRY VDATGETDPAVLRMAYMNANYQTGWHNLMDTAVVDYAREHQHLLTDLPSGLTKIDEIPFD FERRRLTVVVANDAHQWMITKGAFEEMLAVCDRVQLNGDVLPLTPERIRKLEQTNAAMSG QGMRMIVVAYRQDVHQQEIYTPADEQHMVLAGFLGFLDPAKPDAKEAIGLLGAHGVRVKV LTGDNAIITQHVAEEVGIANQLVATGNDVDAMDDSALRQAVETTDLFVKLSPMQKARIIK TMRAAGHTVGYMGDGINDTAALREADVSISVDTAADITKDASGIILLEKSLLVLEDGILE GRRVYANAMKYIKMTIASNFGNAFSVLVASIFLPFLPMLAIQLLVQNLIYDTSQMTIPWD NVDEATLAQPTPWRAKGLLRYTLTFGPLSSIFDITTFLFLWFGLGVGTHAASVPAQHLFQ AGWFVVGLFTQSLVVHVLRTRQTPFWRSPASAIVILSTMMALLVGLFIILSPFHQAFDFG ILPVTYWPGAAVIILIYLILVETVKRIYLKRGRPWL >gi|225002486|gb|ACIZ01000093.1| GENE 15 15258 - 15683 699 141 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199599565|ref|ZP_03212950.1| 50S ribosomal protein L11 [Lactobacillus rhamnosus HN001] # 1 141 1 141 141 273 99 6e-73 MAKKVANIVKLQIPAGKATPAPPVGPALGQAGINIMGFTKDFNARTADQAGMIIPVVITV YEDRSFDFVTKTPPAAILLKKAAGVEHGSGEPNTKKVAKVTKAQVKEIAETKMQDLNAAD VEAAMRMVEGTARSMGFEVED >gi|225002486|gb|ACIZ01000093.1| GENE 16 15780 - 16469 1155 229 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199599566|ref|ZP_03212951.1| Ribosomal protein L1 [Lactobacillus rhamnosus HN001] # 1 229 1 229 229 449 100 1e-126 MAKKGKKYLEAAKAVDATKQYTPEEAVNLLKKIDFAKFDETVEVAYRLNVDPKQADQQIR GAVVLPNGTGKTSKVIVFAQGDQAKAAEDAGADIVGAEDLVQKIQDGWLDFDVAVATPPM MAQVGRLGRILGPKGLMPNPKTGTVTMDTAKAVNDIKAGQVAYRVDKAGIIHAPIGKKSF DADKLLENFKAMNDIVLKARPASTKGIYIKSLTLTSTMAPGIKVNPTDF >gi|225002486|gb|ACIZ01000093.1| GENE 17 16570 - 17115 381 181 aa, chain + ## HITS:1 COG:L3279 KEGG:ns NR:ns ## COG: L3279 COG3981 # Protein_GI_number: 15673542 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Lactococcus lactis # 1 160 1 161 178 76 31.0 3e-14 MESFTIRSLQPNDEDAFNEFRRDVLNFDQQNPHSQNIVRELTPATDFTTRLAVLTADQNP EKPELVPQFAFFMFNSENVILGRVRCRTEMTPMLARTGGHIGYYVAPSQRGHGYAKNLLK FALGYYQQRQEPYVIVTAKAANWASRKTIEASGGVLQEILPEQNTESLAIYHIQLAAATG I >gi|225002486|gb|ACIZ01000093.1| GENE 18 17282 - 18655 1317 457 aa, chain + ## HITS:1 COG:SPy1067 KEGG:ns NR:ns ## COG: SPy1067 COG1012 # Protein_GI_number: 15675059 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 1 451 1 452 465 443 50.0 1e-124 MAYQTVDPNTNTLEKTYANTTPAQISEMLTAGHAFYKQQRNLDPATRSATLHAVAAYFRD NADEMAAIITKEMGKRTEEALGEVELCAEIADMYADRAPALLQPQPLNSTAGAAVVNHVA SGIVFGVEPWNFPYYQLMRVFAPNFMVGNAVIIKPASNVPASGLEFEKAVLAGGADKGAF QIALIGHDDTETFIKDPRVAGVCLTGSEGAGSHVAALAGKYLKKSLMELGGMDAFLVLDG ADLEHVIPEAIKTRLMNCGQVCTSSKRFIVLDKYYDDFVAGLKKGFENVKIGDPSDPSVN VGPLNSQKAKDKLQGQVDTAIEHGAKVVYGNTPVDLPGAFFRPTILTDIDKDNPAYRTEL FGPVACVYKVHSEEEAIALANDVPYGLGGAVFAGDTNHAAEVAAQIETGMVGANQSQSYN AELPFGGVKNSGYGRELGDLGLYTFVNEQTVTRALRQ >gi|225002486|gb|ACIZ01000093.1| GENE 19 19205 - 20758 974 517 aa, chain + ## HITS:1 COG:L76469 KEGG:ns NR:ns ## COG: L76469 COG0438 # Protein_GI_number: 15673436 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 510 1 516 541 472 46.0 1e-132 MNYFINFGMPASKSGIEHAQIKRKRLFDKHGEPYVFLLRDWERDLHTNTANAGITDDHLV NMFDYYQHACHVDVVRLLPEQVDLGLKDLQYSDDYEHNRMLVSRADGRLAARINYVRGTR QVVSVELFDGVENLYQVEFYDVRGFKSLVQWYTPDNKVGNEEWLTVDGRPVIRAFNKKNE DGKLKQTGWILTDRKGKIFQFDTIDAFFEHFINDMNETGQNVFILDRSLLADEALIHLEK PAYTIMHLHNSHAGDAQRPMDSIMNNNYEFALVNGAKYSAFVSATKKQAADVQRRFPYIK KSFHVPVGVVSDDVLHRQRILSENRIFGKVIAVARIAPEKNLNDLVRAIAIVHKQIPQVT LDLYGYPDATNHYAEKRKIEKTIQELSLEGVVAFKGYTENLESAYDTAQIFGLTSIMEGF DLSLLEAISHGVVGVTYDVNYGPNEIVQDGINGYVTPYGDIHALAEKIQLLLSDRDKMQQ MSTNAYESANRYSEENVWKKWHNVLMDAQKSEGKVTK >gi|225002486|gb|ACIZ01000093.1| GENE 20 20755 - 22251 1058 498 aa, chain + ## HITS:1 COG:L78550 KEGG:ns NR:ns ## COG: L78550 COG0438 # Protein_GI_number: 15673437 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 490 1 493 506 298 35.0 2e-80 MIYMVGENVFTFNSGTEFSQLQSLKAFNQNGIESKLLLRNYNRFLYRDAERAGVNKDAYI NMYDYFQGVVGVERKEQKLRLLESIPLTKYHVVGIDNNTTTIDLLGRTLAKITVMPETVG LVGSIDYYDRFDHKELTEFWDWRGFKSMEQNYNPDGTVAAQKFLDQKGHVVLEIIHMNKN GQLAPTMWKLVHYQGHDYVFDSEDDLFRFFLNEISKGNPGIMISDRRTLDAAVKQVNHAT AKLAFIHEGDLFLKGEGKKRVPNVIYNEVLSEQHPFSTVIFPTHDQVKAIETQYPYLTIE AAPDTYAQTPKAKKIQPDHPRLAYIGRLFPDKQITDLVDAFERVHRERPDAELFLKGYFS DEAYRREIRDRIHKKKLDDAIHLVAYSNDNQDILNKTTLFVSAAKSEAFGMNSLEAMSYG IPVIAYGCHFLKHNLLVNRQNGVAVANMTPSELGKAILVVLQDNRLYHKLQAGALNTAKQ HSEADFIGAWKSVLSAFF >gi|225002486|gb|ACIZ01000093.1| GENE 21 22401 - 25200 2240 933 aa, chain + ## HITS:1 COG:no KEGG:LC705_02274 NR:ns ## KEGG: LC705_02274 # Name: not_defined # Def: fibrinogen-binding protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 18 932 1 986 1064 1037 90.0 0 MKKINRANVLVEKKRFKMFKAKKKWLIAPLFFIGIGLGTAYQTNLVKADAQAPNSSEFIE APSSGASSGQNGTNSLKSASASVATASSSASDGRASQGVGGTSSGSSDTTSQANEGNSAA SVTSASANSASATNTSEGQTPVNEAVSNDASSADVSTASEFDAAMADSTVSVINVQSDFV MDVSGDRQSYAYRPNLVINGNNHTIDFQKKYFEADPTSSQNESFTINDLNMYGYSWWGPV TIKGSKPKDGIDHSVVFNNVTYTGAQLMYGIYTKAFIKGNTKIQSVGSYVSPLDGSTQTT QGLGNQQNFQISYLEVLPGATYTGTTTGGTNVEVYDGGSFIVDKGATVNLQRTDASKSNE RGTNALIDTQGGNVEFKDGSTVILNKNALVKDGFAPIYIEDGGNLTVDKNATVSITGATG NIPVRIDGTGTVNLNEGSHMTITQNGAPKLGYGFINIKGTGGFFVASGSTLDLNVTGTGT KSVNAINVANDGQLSFAQDATANLTIDGGTGEAHLLKVGDDANINIYMPKSVLFKITDND DADSSLFKVSGTGTLTGQYVKIIPDDGNAYGPYKSAIYTLKGNGSSSDTATVEGETAEDE QSGKALADTFATDKSLEFVSASDNFIKVNPVTDETTTLTGKTTAGAYVTISGLKGIPEGS LTANSYDSTKYLVQADKGGNWSYELPTGVSLPANASFEVISSAGFIVKTATVVINDAETP KQASSAAGSLINANSAADVTASQAKATSAAASDAASYASEAQSIAGSHADNMEVKSLASD AEKQSQIALAASKSAAASSSAAASAAIVASSAASEASSAAAAVSNADASANSAAAAYDSY ASEASAASAANDSSGYATASSAASSAAAAMSAALSTAQVAAKVAVSDAAAAGSAAAVASA AQSDSKNNQATAATARSQALDDLNKIKSLTDYA Prediction of potential genes in microbial genomes Time: Wed May 25 20:10:05 2011 Seq name: gi|225002485|gb|ACIZ01000094.1| Lactobacillus rhamnosus LMS2-1 contig00102, whole genome shotgun sequence Length of sequence - 15672 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 9, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 950 461 ## LGG_02282 hypothetical protein + Term 1012 - 1056 10.1 - Term 1136 - 1200 12.5 2 2 Tu 1 . - CDS 1301 - 2524 1088 ## COG0477 Permeases of the major facilitator superfamily - Prom 2580 - 2639 7.9 + Prom 2698 - 2757 4.2 3 3 Op 1 . + CDS 2789 - 3319 637 ## LC705_02271 hypothetical protein 4 3 Op 2 . + CDS 3312 - 4133 453 ## LC705_02270 hypothetical protein + Term 4157 - 4197 2.2 - Term 4134 - 4192 8.2 5 4 Tu 1 . - CDS 4236 - 5468 961 ## COG0477 Permeases of the major facilitator superfamily - Prom 5499 - 5558 10.6 + Prom 5580 - 5639 5.2 6 5 Op 1 47/0.000 + CDS 5776 - 6297 840 ## PROTEIN SUPPORTED gi|229552930|ref|ZP_04441655.1| ribosomal protein L10 7 5 Op 2 . + CDS 6338 - 6706 586 ## PROTEIN SUPPORTED gi|229552931|ref|ZP_04441656.1| ribosomal protein L7/L12 + Term 6752 - 6794 -0.5 8 6 Tu 1 . - CDS 6909 - 7811 832 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 8026 - 8085 7.8 + Prom 7982 - 8041 8.2 9 7 Tu 1 . + CDS 8097 - 14018 4878 ## COG1404 Subtilisin-like serine proteases 10 8 Tu 1 . - CDS 14187 - 15122 747 ## COG1609 Transcriptional regulators - Term 15160 - 15214 12.3 11 9 Tu 1 . - CDS 15236 - 15649 357 ## LC705_02263 hypothetical protein Predicted protein(s) >gi|225002485|gb|ACIZ01000094.1| GENE 1 3 - 950 461 315 aa, chain + ## HITS:1 COG:no KEGG:LGG_02282 NR:ns ## KEGG: LGG_02282 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 24 315 1142 1433 1433 139 97.0 1e-31 ASTATSAYASAASSSASEAGSYAHQAGSSASEATGHASSATSQASAASSAASRYPSDSGV QSDVSIASSAASTASSAASAAQSEASTASSAASHASEQASIASSEDVVSSSAASVASSAA SAASSAAKAGNSSAAGIYSHAASAAASSAKSAESQASSAASAAASDDSVASSAASAALSD DAKASSAADVASSATTAAISSATSLADQSAAGSTAGSHILPSTGGETTGSMPSGQTPTQT KPTQTKPTQTKPTQAGQTIQIGSLPQTDHAGRHMLPQTGDDAESGTSVLGLLIVSLMGLF GLAGTRHQKENKPSK >gi|225002485|gb|ACIZ01000094.1| GENE 2 1301 - 2524 1088 407 aa, chain - ## HITS:1 COG:BS_yceI KEGG:ns NR:ns ## COG: BS_yceI COG0477 # Protein_GI_number: 16077364 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 1 396 1 399 400 422 62.0 1e-118 MSKKAPSHTRLIIGIGIAWLFDAMDVGMLSFVIAALHKEWQLSTVEMGWIGSVSSIGMAV GAILFGMMADRFGRKAILILTLLVFSIGSGISAFATGYGIFLVLRFIIGAGLGGELPVAS TLVSESVPVEKRGRSVVLLESFWAAGWLLAAIISYFVMPIWGWRVAIFATGLAGLYAFYF REGIHESRAFKKVARPGLIKTLTTLWRPPYVRSTLMLWIVWFMVVFSYYGMFLWLPSVMV LKGFSLINSFGYVLIMTLAQLPGYFVAAWLIEKWGRKTVLSLFLLGTAGSALGFGMAASL PMLLTAGMLLSFFNLGAWGALYAYSPEQYPTIVRSSGSGMAAGIGRIGGIVGPLLVGHLL GANWSVTGIFGIFTASILIAIIAIIFLGKETMGVKLADTIETSTAKQ >gi|225002485|gb|ACIZ01000094.1| GENE 3 2789 - 3319 637 176 aa, chain + ## HITS:1 COG:no KEGG:LC705_02271 NR:ns ## KEGG: LC705_02271 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 176 1 176 176 321 100.0 7e-87 MKKIMEWYYGISLKDRFKQRTYDAIMGRNMLTAELMLVIASVIAVFIDANSLKLITASTW ILLLVTVAIALLNVTSLYYYRLQVIEADTPEAYRQYVWFAVARGVLSALLLAVIIFAIEM AYEAALDMNPLPQYYLTNHFWIGVVVPVIYGVARFAYGFMHLHGNQEQEKDTDHHD >gi|225002485|gb|ACIZ01000094.1| GENE 4 3312 - 4133 453 273 aa, chain + ## HITS:1 COG:no KEGG:LC705_02270 NR:ns ## KEGG: LC705_02270 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 4 273 1 270 270 523 99.0 1e-147 MTNLNHAGCRRVTLADIRPLLETADDWTKGLFANSAATLLGFPKTGPIQFAAAVWQNAYH DHALYFNVVGQGSWFPLLLTKLKKMAGKHDRLQFSTYTAASPLTQQLQWAGFELIRHTAM SHYRKLAAATSNDTVVARSQLSEAQWQAVVRLSYQNYVDAHTANPATMTQTQFEQSLREA DPNQPSFLVEGGTILAYVFWFEDEPGELTSAWLGGTGLADTLRLMRAVLPRLQAAFSVVN GEFDDTDSFAWAVYQQLAVPDPHPLMTWQMKLD >gi|225002485|gb|ACIZ01000094.1| GENE 5 4236 - 5468 961 410 aa, chain - ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 8 397 1 389 402 310 43.0 4e-84 MPSKLKSLEPWQQNLAVLWLGTFIAGMGFSEVSPFISLYVDQLGDFTKGQLSIYSGITFG VTFMVVAIVSPLWGRLADRRGRKLMLLRSSFGMAIIIGACGFVHNVYALIALRFLQGLAA GYIPNASALIATETPKAKSGTAIGILTTGYVSGNLIGPILGGFLAQTFSIRLTFIITGAL LMIVFVLSLTMVHEHYTPDPRLLNKQKRPGLLTQVGNPKAIMVLLISTAIIQLGNMSIYP IISLYVKELMHNVGPITVVAGIIAALPGISNLMAAPRLGQLGDRIGSGKILVSGLIFAVI MYIPQGIVGSIWALGFLRLMIGVSDGALFPTIQTLLSKMTPVSYTGTVFSWNQSAQAFGS MAGSLAGGFISNIFDYNGVFIFTALCLALDLAMVWIFIPHIWSSRPRQQE >gi|225002485|gb|ACIZ01000094.1| GENE 6 5776 - 6297 840 173 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229552930|ref|ZP_04441655.1| ribosomal protein L10 [Lactobacillus rhamnosus LMS2-1] # 1 173 1 173 173 328 100 2e-89 MEVKNMSEQAIAKKAELVKTISEQFKNATSAVVVDYLGLTVEQVTALRKELREAGVKMEV LKNTYLRRAADANGYEALDDVFKGPTAVAFSNDDPVAPARIMAKYADQFDALKIKGGIIE NKVASLDTIMEMSKMPDREGLLSQLASVLQAPVRDFALVVKAIAESKDEEPAA >gi|225002485|gb|ACIZ01000094.1| GENE 7 6338 - 6706 586 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229552931|ref|ZP_04441656.1| ribosomal protein L7/L12 [Lactobacillus rhamnosus LMS2-1] # 1 122 1 122 122 230 100 5e-60 MALDVDGIIAQLKDASILELNDLVKSIEDEFGVKAAAPVAAGAAAGGDAAATKDSYDVEL TEAGQEKVKVIKAVREITGQGLKDAKGLVDAAPKVIKEGLSEDDANKIKEQLEEVGATVT LK >gi|225002485|gb|ACIZ01000094.1| GENE 8 6909 - 7811 832 300 aa, chain - ## HITS:1 COG:lin2322 KEGG:ns NR:ns ## COG: lin2322 COG0760 # Protein_GI_number: 16801386 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 1 300 1 288 291 135 34.0 7e-32 MKKKLRVPFLAAMMASSIMLLSGCQSKQADSTTVATYSGGQVTQASFYKELKQSPTTKTV LANLLIYRALNKAYGKSVSAKSVDNTYNSYKNEYGENFTSFLSQNGFSKSSFRQSIRTNL LSEVALKKLKKVTNSQLKAAWKTYQPKVTVQHILTSDESTAKQVISDLAAGKDFTTLAKT YSIDTSTKDKGGKVSFESNSKSLDSTFKDAAYKLKNGEYTQSPVKVTNGYEVIKMIKHPA KGTFSDSKKALTASVYSKWSRNSSVMQRVISQVLKDQHVTIKDKDLADALDSYKQSVAAN >gi|225002485|gb|ACIZ01000094.1| GENE 9 8097 - 14018 4878 1973 aa, chain + ## HITS:1 COG:SPy0416 KEGG:ns NR:ns ## COG: SPy0416 COG1404 # Protein_GI_number: 15674549 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Streptococcus pyogenes M1 GAS # 273 833 272 822 1647 191 31.0 1e-47 MQTKRKGLSILLASTVALGALSVLPIGEVQAKAAISQQTKGTNLAEAKTASAGRTAKDTT SAVTNQAIATQLAAKGIDYNKLNKVQQQDTYVDVIVQMSAAPASENGTLKPDYSSTAEIQ QATNQVIAAQASVKSAVEQVTHQTAGESYGYVVNGFTTKVKVADIPRLKQIPGVKTVTLA KVYYPTDAKANSMANVQAVWSNYKYKGEGTVVSVIDTGIDPNHKDMRLSDTKKAKLTRTD VEKFTSTAKHGRYFTAKVPYGFNYADNNDTITDDTVDEQHGMHVSGIIGANGTGDDPTKS VVGVAPESQLLAMKVFTNSDTSATTGSSTLVSAIEDSAKLGADVLNMSLGSVSGNQTLED PEIAAVQNANESGTAAVISAGNSGTSGSGTEGVNKDYYGLQDNETVGTPGTSRGATTVAS AENTDVINQAVTITDGSGLKLGPETVQLLSNDFVDSFDQKKFYVVKDASGKLSTGDAGDY TADAKGKIAIVKRGSLTFTDKQKYAEAAGAAGLIIVNNDGTSTPLTSISLTATFPTFGLS NTTGQKLVDWVTAHPNDSLGVKIALALLPNQNYKADRMSSFTSYGPVSDLSFKPDITAPG GNIWSTQNNNGYTNMSGTSMASPFIAGSQALLKQALNNKDNEFYADYKQLKGTALTDFLK TVEMNTAKPINDINYNNVIVSPRRQGAGLVDVKAAIDALEKNPSTVVSENGYPAVELKDF TSTTKTFKLTFTNRTKHQLTYQMTSNEDTNAVYTSATDPNSGVLYDKKITDAAVKPDTDI VVPAGKSVKVPFTLSLPKTFDQQQFVEGFLNFKGNDGSNLNLPYMGFFGDWNDGKIVDSL NGVTYDPTGGNYGTVPVLTNKKTGSQYYGGLVTDASGKQTVDDKAVAFSSDKNALYNDIS MQYYLLRNISDVQVDVLDNHGNKVTTLSSTTNQTKTYYDSTGRNYTYYRAPAWDGTYYDQ RDGNIKTAADGNYTYRISGVPEGGDKRQTYDVAFTLDSKAPTVRHVALTSRQEKGKTTYY LTAEAKDDRSGLDATKSAKTSVNQVTNLDGTFTTTGTTADGYTKLETPLTDKQAQALGQG DNNVELYLTDNASNATDQSASAQKPGSTAYDLIINGGGLPDKITSQTANYQAGKQGGTYT FTGTYPAAVYGTYTDAQGKQHDLTTTYDADANSFKATMALDASDYATKVDLYTDQAHTQL VKHFDTNVRLAAPTFSDLRVNDNQDQTSESTVKVTGTASADTEKVTVTNGGTTTPVTLDA KHHFSGDVPVNYGDNTITVTAEDEDGNTVTKQQKVNSTYDADVLKNAVTFDQGVTFGANQ LKVKDAKYYDPKTGIATITGKVKHPTTTLQVDGKQVPINDDLTFSFKLNLGTAGQKPFGV VIGDTTQDKTVQDSLTFILDAIAPTLSLDSSTDKPVYTNDPNFRITGTATDNVNYLELAI NGSQVASQYEDINLNSGQPGHMAIDQTVKLLEGKNVLTVAATDSGSNVTTKKITVYYEPK KTLAAPTITPNTTDPAKEVTLTAKAAAGETVQYSTDGGKTYQDLPTTGLSVSANADFKFK AVDLYGNESPAVDYAVKNIKTDDPAQLQKATTTLQDLLTQAKAKAASAQYTDATTDALNT AIGSAQTALAKADATIETLTTATTQLTTAVNQLVDKLPADQQAALLNKIQSAKEAFGTDL GGQTDPSTGKTLNAELDAVAAQTTAGTSTADQIETNFNKVLDAALNQLAKTIKAATPVKV GNAKDTTTGKTWYGDVDAVIAAGTAAKADTEKIAQLQGLFGLKTKIAAAVEAAAKTPQQP GGGSGSGSDTGKGSGTGSGSEAGKGSGTGSGSEAGKGSGSGSGSEAGKGSGTGSGSEAGK GSGTGSGSEAGKGSDTGSGSDAGKGSGTDKGNQPKDTPSTNPKGGDDKKQTQETPAQPTG TENANSNGANSQASTKDTLPSTNESPRPALAFLGALVMGGLGLLGIKRKRKQS >gi|225002485|gb|ACIZ01000094.1| GENE 10 14187 - 15122 747 311 aa, chain - ## HITS:1 COG:lin2880 KEGG:ns NR:ns ## COG: lin2880 COG1609 # Protein_GI_number: 16801940 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 310 1 315 318 220 36.0 2e-57 MANIHDIARLSGYSTATVSRVINGHRYVSAAARARILTVMKQLDYVPSTMAQNLSAGKTR TIGVILPHTDHPYFEQLVTGILNAAMIGNYHAVILPSRYDQELERTYLEALRRQAYDGLI FTSHGLGLSTIASYQRYGPIVVCEDPGQVKLAAAYADRTPAYQAAFNWMKRQGHTRIGLL LSRPYAQSATSKLTINSYVDVFGHRPEQSLVVYQMRTFQDGYRAGKMLAAKQPDFILGNG DDITAGLRQYFVDQHLPIPPLMGQENQLSSRLLNMSTIDHHVTAIGAAALKLALRAEVAQ TVIQSDLILRD >gi|225002485|gb|ACIZ01000094.1| GENE 11 15236 - 15649 357 137 aa, chain - ## HITS:1 COG:no KEGG:LC705_02263 NR:ns ## KEGG: LC705_02263 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 137 1 137 137 243 100.0 1e-63 MLMQTHFYSELPVYHPTQIGALKAIALKLTTDYDFDYQEVLSSLLASAAEETQLLSDRIV LTYGHVSKLSAPMVIGFDFGSQLPWAAGQQISGAVVLLVPVSTDDQTIHDWLDAIATNSR DHQDLEAVTQMATAAIA Prediction of potential genes in microbial genomes Time: Wed May 25 20:10:27 2011 Seq name: gi|225002484|gb|ACIZ01000095.1| Lactobacillus rhamnosus LMS2-1 contig00103, whole genome shotgun sequence Length of sequence - 15757 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 7, operones - 4 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 318 280 ## LC705_02296 transposase, IS605 family protein 2 1 Op 2 . - CDS 353 - 493 66 ## LC705_00514 ISSoc2 resolvase 3 1 Op 3 . - CDS 518 - 754 84 ## LC705_00514 ISSoc2 resolvase - Prom 778 - 837 4.6 + Prom 1007 - 1066 8.7 4 2 Tu 1 . + CDS 1302 - 3911 2224 ## COG2898 Uncharacterized conserved protein + Prom 3930 - 3989 4.3 5 3 Op 1 . + CDS 4057 - 4653 529 ## COG2813 16S RNA G1207 methylase RsmC 6 3 Op 2 . + CDS 4710 - 5036 435 ## LC705_02256 hypothetical protein + Term 5075 - 5122 4.4 + Prom 5076 - 5135 2.7 7 4 Op 1 2/0.000 + CDS 5221 - 5733 342 ## COG0590 Cytosine/adenosine deaminases + Term 5848 - 5884 6.4 + Prom 5813 - 5872 3.8 8 4 Op 2 30/0.000 + CDS 5981 - 7678 1528 ## COG2812 DNA polymerase III, gamma/tau subunits 9 4 Op 3 23/0.000 + CDS 7695 - 8003 388 ## COG0718 Uncharacterized protein conserved in bacteria 10 4 Op 4 . + CDS 8131 - 8730 416 ## COG0353 Recombinational DNA repair protein (RecF pathway) 11 4 Op 5 . + CDS 8730 - 8993 392 ## LGG_02263 hypothetical protein + Prom 9156 - 9215 4.3 12 5 Op 1 4/0.000 + CDS 9240 - 9887 650 ## COG0125 Thymidylate kinase 13 5 Op 2 2/0.000 + CDS 9944 - 10273 369 ## COG3870 Uncharacterized protein conserved in bacteria 14 5 Op 3 1/0.000 + CDS 10273 - 11250 791 ## COG0470 ATPase involved in DNA replication 15 5 Op 4 2/0.000 + CDS 11255 - 11593 306 ## COG4467 Uncharacterized protein conserved in bacteria 16 5 Op 5 . + CDS 11580 - 12452 827 ## COG0313 Predicted methyltransferases 17 5 Op 6 . + CDS 12516 - 13259 701 ## COG3884 Acyl-ACP thioesterase + Term 13296 - 13341 2.2 - Term 13283 - 13329 6.2 18 6 Tu 1 . - CDS 13348 - 14322 764 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D - Prom 14529 - 14588 6.1 19 7 Tu 1 . + CDS 14919 - 15437 494 ## LSEI_2252 hypothetical protein + Term 15473 - 15529 13.0 Predicted protein(s) >gi|225002484|gb|ACIZ01000095.1| GENE 1 3 - 318 280 105 aa, chain - ## HITS:1 COG:no KEGG:LC705_02296 NR:ns ## KEGG: LC705_02296 # Name: is8 # Def: transposase, IS605 family protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 104 1 104 393 205 97.0 4e-52 MIKTHKIKLYPNATMRKELEKLFDYRRFVWNQGLEVWNDMYDASLVMMDKSIRPNERKVR DELVMNKADWQFERSARVLQLAVNDLSKAWANYFNPKMPNHEKPK >gi|225002484|gb|ACIZ01000095.1| GENE 2 353 - 493 66 46 aa, chain - ## HITS:1 COG:no KEGG:LC705_00514 NR:ns ## KEGG: LC705_00514 # Name: minF # Def: ISSoc2 resolvase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 3 46 155 198 198 85 88.0 7e-16 MGLNHPNLSPQEELTEDLISIIHLFSCRLSGLRKYKKKIEDDPSLK >gi|225002484|gb|ACIZ01000095.1| GENE 3 518 - 754 84 78 aa, chain - ## HITS:1 COG:no KEGG:LC705_00514 NR:ns ## KEGG: LC705_00514 # Name: minF # Def: ISSoc2 resolvase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 24 69 17 62 198 63 65.0 2e-09 MSTIIKWKMLICSNQTKWLNASVSLQKWDKSRKFKAHIAPTNRCYDTEDQHLACIGHADE SKKHRPVAYVLAMIGLSA >gi|225002484|gb|ACIZ01000095.1| GENE 4 1302 - 3911 2224 869 aa, chain + ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 253 848 1 594 613 565 48.0 1e-160 MKRLFRKVGTFFKKHLTTLKVLFVLAVLVFVIFEVGRISQDLSGEQMRASLATQSPGSLI ILLIVGLIAVTPMLTYDFVITELLPGDYPRRYVIKSGWIVNTFTNIAGFGGLLGASLRAN FYHEKATQKQVLFAISKIAMFLLAGLSLWSMIGIVIIFVFGIGAEFSNYWIWLVGGAAYF PLLMFISHVRDSEFFADMPLKRQLRLTLGSFLEWGGCAAFFLLIGYFLEVRIPLMSVLPL FMVANVIGVISMVPGGLGSFDVFMIFELGQLGLDSNVAVVWLLFYRLFYYVIPFLIGAGL FAQDAGKRLNAYLEGLPVQLIRKVAFGFLVIFLYFSGIMLLLRGVAPDLAFRNTLYQRLY PYTFLFLDRVTNVVVAFLILGFGRGIASRVKRAYWPTVIVLIVAMIASLREDNHLRFIVF LVLVVLALILTRRELTRERLALSWGNKLIDGAVFGLTFIFYAFAAFYNAPAIHHRHVPDV FLFPSERMFFTTLIGVMLAALTVYLIFRYLSAPSKPLADPYDEERLKAVVEKYGGNEVSH LALMRDKSLHFYQVDGEDRVFFLFKKKADKLIIMGEPIGDETQMAAAIGDFMKKADKQDL SLVFYEINESLTMKLHEFGFDFMKFGEEGYVDVTTFTLAGSKRKGERALMHKFEREGYTV ELLQPPFDDALMQELKAVSDSWLAGRSEKGFSLGFFDRHYLNQAPIAVVRGPEGKIVAFA SDMPSGNQEVTSIDLMRSSADAPSGIMDEVFINLFQLAKQRGFKYFNMGMAPLANVGTSD YSFIEEKIAHLVYEYGYRFYGFQGLRSYKNKYVTEWVPKYVAYRKRTSLLFTLLQIMMVV NQKVTIASPVKWWPKRLAWVSRLGQGIDK >gi|225002484|gb|ACIZ01000095.1| GENE 5 4057 - 4653 529 198 aa, chain + ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 3 198 5 200 201 208 52.0 5e-54 MQHYYTNDPDLAHDERTFDFELGGHRLRFTTDNGVFSKHTVDFGSRVLIAAVLAETLPDG PILDVGAGYGPIGLALAKHFPNRQVTMSDVNERALALAKQNAADNGITNVSIIESSMYDS IDDQFAVVVTNPPIRAGKAIVSGILSGAAAHLLPGGQLYAVIQKKQGAPSALKLMKATYA NAEVIKKEHGYYILKASK >gi|225002484|gb|ACIZ01000095.1| GENE 6 4710 - 5036 435 108 aa, chain + ## HITS:1 COG:no KEGG:LC705_02256 NR:ns ## KEGG: LC705_02256 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 108 1 108 108 154 99.0 1e-36 MANSKYLAAGAVAAAVIATGAFVCAKNLTEYFERRHQRKQVKGFVKKIFGDNERVQSILD KLSDDDVANLLRVSDKLRSLKDSASEYAGSAREQGLAAFDRLKAALSR >gi|225002484|gb|ACIZ01000095.1| GENE 7 5221 - 5733 342 170 aa, chain + ## HITS:1 COG:lin2867 KEGG:ns NR:ns ## COG: lin2867 COG0590 # Protein_GI_number: 16801927 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Listeria innocua # 7 157 2 152 154 178 56.0 5e-45 MAMTDSEINQYMIAALVEAKKAAAIGEVPIGAVVVHDQQIIGRGYNLRETTQDATQHAEI LAIQAACRQLGTWRLEDCSLFVTLEPCPMCAGAMINARIATCYFGATDPKAGVAGTFYNL LEDTRFNHQVAVVPGIQATASAALLQDFFRAIRAKRKAAKQAGQTDQNQV >gi|225002484|gb|ACIZ01000095.1| GENE 8 5981 - 7678 1528 565 aa, chain + ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 556 1 573 579 521 48.0 1e-147 MSYQALYRVWRPQQFKDVIGQDAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAK ALNCLHLEDGEPDNTCEICQAINDGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTRARV KVYIIDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITP EDIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDV TGGVTTAVLGKYLAAVLAKDHAQALKMVEDLLAAGKDAGRLIEDLIEYLRDLLVNQQAPA LLGELEKSLLDDQFKILSENFKPAQIYHMIDVLNTTQQQLRMTNHPEIYLEVATVRLSET AKPVVEAAPEPAVTPQLEQLSAKVKQLSDQLKRVEANGGTIAPPPRTRRVKKQKANHVNR KAIYPILGAATKQDLTNLKDVWPDLLGMLSITKRAMMKVSEPVAASPDGVIVSFDYDILV ERAMNDAALMTELETGLQKLTGKQPKIVLVQSDVWPTIRKEYIQELKAPAAKAETKETKP QTPPVVSKLTELFGKDAPNVTIKND >gi|225002484|gb|ACIZ01000095.1| GENE 9 7695 - 8003 388 102 aa, chain + ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 4 101 1 98 99 95 57.0 2e-20 MRGMGNMQSMMRQMQKMQKEMQAAQKELYATEFEGKSASDMVTVKFSGEKVMKDIQIKPE AIDPDDPDMLQDLIIEAVNQAMADIDKQTQDKLGKYTRGLPM >gi|225002484|gb|ACIZ01000095.1| GENE 10 8131 - 8730 416 199 aa, chain + ## HITS:1 COG:SPy1422 KEGG:ns NR:ns ## COG: SPy1422 COG0353 # Protein_GI_number: 15675339 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Streptococcus pyogenes M1 GAS # 1 199 1 198 198 271 65.0 6e-73 MQYPEPISKLIDSYMRLPGIGAKTATRLAFYTIDMNKDDVTAFAKSLVAAKEDLHYCSIC GNITDEDPCAICRDKNRDQSTILVVEQPKDVMSIDRAQDYHGLYHVLQGVLSPIEGRGPE DLNIESLLKRLKKNTAVKEVIIATNATPEGEATAQYLARLIKPAGIKVTRLAHGLSVGSD IEYADEMTLMKAVEGRTEL >gi|225002484|gb|ACIZ01000095.1| GENE 11 8730 - 8993 392 87 aa, chain + ## HITS:1 COG:no KEGG:LGG_02263 NR:ns ## KEGG: LGG_02263 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 87 1 87 87 112 100.0 5e-24 MFGRKQIKVKEEKDEELMMLVYRVRDQMAAQRKLVATFREVDDQTKSQVALQAALFDFLY REARTRKIKGEIVAKVAAEQIAEFRDQ >gi|225002484|gb|ACIZ01000095.1| GENE 12 9240 - 9887 650 215 aa, chain + ## HITS:1 COG:SPy0399 KEGG:ns NR:ns ## COG: SPy0399 COG0125 # Protein_GI_number: 15674539 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Streptococcus pyogenes M1 GAS # 1 202 2 202 211 221 56.0 1e-57 MTGTFITFEGPDGAGKTSVLNTLIPKLKACSVTSVHLTREPGGAKISEMIRDVILDPKNT AMDARTEALLYAASRRQHLVEVIQPALAHGDIVVCDRFVDSSVAYQGGGRQIGTQAVLQM NQFATAGLEPDLTVYLDVPVQVGLDRIMAHQGERQYDRLDQESLAFHERVHAAYMKLVAD NPKRIVTVDATQPLAAVVTAAFMTITERFPELFAK >gi|225002484|gb|ACIZ01000095.1| GENE 13 9944 - 10273 369 109 aa, chain + ## HITS:1 COG:lin2840 KEGG:ns NR:ns ## COG: lin2840 COG3870 # Protein_GI_number: 16801900 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 109 1 109 109 141 65.0 3e-34 MKLILAIVQDKDSNLLSSQFIDANIQATKLSTTGGFLKAGNTTFIIGVADERVDEVLKII KETSQTRQQFMTPPVNLDATSDSSIAYPVEVQVGGATVFVLPIEAFHRF >gi|225002484|gb|ACIZ01000095.1| GENE 14 10273 - 11250 791 325 aa, chain + ## HITS:1 COG:lin0205 KEGG:ns NR:ns ## COG: lin0205 COG0470 # Protein_GI_number: 16799282 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Listeria innocua # 6 322 7 327 330 186 34.0 8e-47 MADFLINTLQPKLVAQFARVIDRHQLAQSYLFVGPKGAGKLALAEWIALRLFCQHVQDGA PCGECPECERILNHNHPDVMMLKTSTQSIKVDDIRNLKQEMSKTGVEGNQRVFIVEDADK MTAGAANSLLKFFEEPVPGMTVILTATAKNQLLPTILSRAQVITFQSPDRNAVITKLEEG GANSQLARVAGRLTGNVSEAQELLASDDFQDRVNRVFQLLDRLADHDPESFVRVQTQLLP VAKDAEAQRQVLALIGLAYADALNRHFQVNAPQQLDIPAIGILAKLSSRQLTASLQAILT AQVRLTQNVTFQSATEQLMLKLLEG >gi|225002484|gb|ACIZ01000095.1| GENE 15 11255 - 11593 306 112 aa, chain + ## HITS:1 COG:SPy0405 KEGG:ns NR:ns ## COG: SPy0405 COG4467 # Protein_GI_number: 15674542 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 108 1 104 107 74 40.0 5e-14 MEKKELYDGFLVLEKHAQQMLKEIAAMKDDMAETLERNAELEIENKHLRQHLAELEKDDN KTSDGGVELSKSKQNLESLYNEGFHVCPMFYGQRRVNDEPCAFCLDIIYGEN >gi|225002484|gb|ACIZ01000095.1| GENE 16 11580 - 12452 827 290 aa, chain + ## HITS:1 COG:L6615 KEGG:ns NR:ns ## COG: L6615 COG0313 # Protein_GI_number: 15672384 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Lactococcus lactis # 9 288 19 302 302 297 55.0 2e-80 MGRIDLEQQRSFGTHTTGTLYLVPTPIGNLADMTIRAVELLKTVDLIAAEDTRHTQMLLN HFEIATKTISFHEHNTQMRIPELLAKLQNGVTIAQVSDAGMPSISDPGKELVHAAIEAGI PVVPLPGANAATTALIASGLPPQPFLFYGFLPRKTGEKQRVLEKLSSEPATLLFYESPHR VGKTLAAMVAVFGDRQAALARELTKKFETFIRGSLTELQTYAANELKGEFVIMVAGATDK PAVNSQLPLKEQVAAIVATGAKPNAAIKLVAKQNGVAKQVVYDAYHELDK >gi|225002484|gb|ACIZ01000095.1| GENE 17 12516 - 13259 701 247 aa, chain + ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 1 244 1 241 245 137 29.0 2e-32 MGAVYEEDYRIPGFLGDRFGRAGLANMMNVMLEVSERQLEQLHAGIDAISEFHAGWVITQ YHMDIHRMPKIEERLRVGTEATTYNKYFTYRDYWIDDAQGNRLVSVSSNWVIMDLRTRKI VDVIPELVERVGAVSNRKINRFPRFKKVTDPDGEEAFHVRYFDIDSNGHVNNAHYLEWME NSLGYDFLSTHTLRGADIRYEREVAYGTTPTAQFQHDPDDPMRTLHRVVTNDQVNAEAQM IWDDFSA >gi|225002484|gb|ACIZ01000095.1| GENE 18 13348 - 14322 764 324 aa, chain - ## HITS:1 COG:BH1624 KEGG:ns NR:ns ## COG: BH1624 COG0252 # Protein_GI_number: 15614187 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Bacillus halodurans # 3 315 2 319 322 337 54.0 2e-92 MTKHILVLHTGGTISMTETRDGDIMPSQHNPLLGADSFVPAGVELTNEEIFNLPSPHMTP ERMLTLVKRIRRAEKEGADGVVVTHGTDTLEETAYFLDLTLDSAMPVVVTGAMRSSNEIG SDGLENLQSAIKTAASDESRNKGTLVVMNDEIHTARFVTKTHTTNVATFRTPTFGPVGLV TKDGVRFFQELINQEVCAIDHLVDRVFLIKAYAGMDGTLFDALPDNINGLAIEALGAGNL PPTTLPAIQRLLDRHVPIVLVSRCFNGVAQAVYNYEGGGVQLKKMGIIFCQGLNGQKARI KLQVGLSDGKRGQALADFVDNAVS >gi|225002484|gb|ACIZ01000095.1| GENE 19 14919 - 15437 494 172 aa, chain + ## HITS:1 COG:no KEGG:LSEI_2252 NR:ns ## KEGG: LSEI_2252 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 172 1 172 172 273 90.0 3e-72 MQVLSFSSPKLSTRNIVYLAMMMAMQIVLSRFSFGTPWLKISPAFFATILMGYYFGPWMA AAAAALNDQLSIMIFNPGANFPGFTLSAAIAAMIYGMFFHGKKVSVIRTLLGVGLVLLIS NIILTTLWLNMMGTPWQGIIWPRTIKNVVMLPIQTALSYATLKSVERIRPHL Prediction of potential genes in microbial genomes Time: Wed May 25 20:10:49 2011 Seq name: gi|225002483|gb|ACIZ01000096.1| Lactobacillus rhamnosus LMS2-1 contig00104, whole genome shotgun sequence Length of sequence - 34476 bp Number of predicted genes - 33, with homology - 33 Number of transcription units - 19, operones - 10 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 82 - 687 560 ## LGG_02253 hypothetical protein + Prom 693 - 752 2.7 2 2 Op 1 20/0.000 + CDS 870 - 1592 237 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 3 2 Op 2 9/0.000 + CDS 1576 - 2109 371 ## PROTEIN SUPPORTED gi|227894610|ref|ZP_04012415.1| ribosomal protein ala-acetyltransferase 4 2 Op 3 . + CDS 2145 - 3167 696 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase + Term 3201 - 3241 -0.9 + Prom 3173 - 3232 4.7 5 2 Op 4 . + CDS 3265 - 3591 430 ## COG1440 Phosphotransferase system cellobiose-specific component IIB + Term 3620 - 3674 16.2 - Term 3608 - 3660 8.2 6 3 Tu 1 . - CDS 3717 - 5669 1587 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 5806 - 5865 3.6 + Prom 5611 - 5670 5.5 7 4 Tu 1 . + CDS 5888 - 6541 617 ## COG2344 AT-rich DNA-binding protein + Term 6557 - 6599 3.0 + Prom 6569 - 6628 6.8 8 5 Op 1 8/0.000 + CDS 6652 - 7017 406 ## COG1725 Predicted transcriptional regulators 9 5 Op 2 . + CDS 7014 - 7901 904 ## COG1131 ABC-type multidrug transport system, ATPase component 10 5 Op 3 . + CDS 7901 - 8971 751 ## LGG_02244 hypothetical protein + Term 9025 - 9078 -0.8 - Term 9013 - 9065 7.4 11 6 Op 1 . - CDS 9130 - 10188 813 ## COG1316 Transcriptional regulator 12 6 Op 2 . - CDS 10267 - 10911 485 ## LC705_02230 metal-dependent membrane protease - Prom 10936 - 10995 4.8 + Prom 10944 - 11003 5.7 13 7 Op 1 41/0.000 + CDS 11064 - 11345 358 ## COG0234 Co-chaperonin GroES (HSP10) 14 7 Op 2 . + CDS 11381 - 13015 1571 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 13042 - 13087 11.3 + Prom 13168 - 13227 7.8 15 8 Tu 1 . + CDS 13334 - 13678 380 ## LGG_02238 hypothetical protein + Term 13685 - 13732 11.2 + Prom 13794 - 13853 6.2 16 9 Tu 1 . + CDS 13877 - 15703 1659 ## COG0531 Amino acid transporters + Prom 16060 - 16119 2.8 17 10 Op 1 6/0.000 + CDS 16151 - 18724 2344 ## COG0249 Mismatch repair ATPase (MutS family) 18 10 Op 2 . + CDS 18729 - 20681 1416 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 19 10 Op 3 . + CDS 20678 - 21226 540 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation + Term 21276 - 21315 4.4 - Term 21264 - 21303 4.4 20 11 Op 1 . - CDS 21324 - 21818 393 ## LC705_02220 hypothetical protein 21 11 Op 2 . - CDS 21815 - 23269 909 ## COG0477 Permeases of the major facilitator superfamily - Prom 23290 - 23349 5.2 22 12 Op 1 . + CDS 23435 - 24436 666 ## LC705_02218 acyltransferase 3 23 12 Op 2 . + CDS 24423 - 25220 658 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 25308 - 25356 12.4 - Term 25295 - 25344 9.1 24 13 Op 1 . - CDS 25451 - 25837 318 ## LC705_02216 magnesium\cobalt efflux protein 25 13 Op 2 . - CDS 25856 - 26839 1142 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 26870 - 26929 5.0 + Prom 26887 - 26946 4.5 26 14 Op 1 . + CDS 27145 - 27894 659 ## COG4295 Uncharacterized protein conserved in bacteria 27 14 Op 2 . + CDS 27913 - 28533 616 ## COG0518 GMP synthase - Glutamine amidotransferase domain + Prom 28645 - 28704 3.3 28 15 Tu 1 . + CDS 28813 - 29811 1008 ## LC705_02213 hypothetical protein + Term 29843 - 29915 9.1 - Term 29839 - 29892 4.2 29 16 Tu 1 . - CDS 29924 - 30481 367 ## COG0500 SAM-dependent methyltransferases - Prom 30708 - 30767 74.2 + TRNA 30696 - 30767 75.5 # Asn GTT 0 0 30 17 Tu 1 . + CDS 31029 - 31571 584 ## COG1268 Uncharacterized conserved protein + Term 31605 - 31659 7.7 31 18 Op 1 . - CDS 31719 - 32084 288 ## LC705_02210 hypothetical protein 32 18 Op 2 . - CDS 32124 - 33266 815 ## COG1600 Uncharacterized Fe-S protein - Prom 33292 - 33351 5.0 - Term 33385 - 33423 4.4 33 19 Tu 1 . - CDS 33555 - 34343 653 ## COG2365 Protein tyrosine/serine phosphatase - Prom 34371 - 34430 5.3 Predicted protein(s) >gi|225002483|gb|ACIZ01000096.1| GENE 1 82 - 687 560 201 aa, chain + ## HITS:1 COG:no KEGG:LGG_02253 NR:ns ## KEGG: LGG_02253 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 201 32 232 232 332 99.0 6e-90 MYLLLIGLTALALAGVGLWALQLERQIVAMQLTTHKMMYPNQVRSGRKTYIRNLYREDAS ARLVRRVGLIGSWISGLAFAVALGNQFYTELRHLPFISRLYVMATNYLTTRDLALWVVMI SVIVAGLAWIWLAKWLHDRLLAENEATGIQSATDLYWTPEGVIHQRLWLKILLQVLLIVG GVLLLLAALNGALPDPGQAWI >gi|225002483|gb|ACIZ01000096.1| GENE 2 870 - 1592 237 240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 43 226 2 185 380 95 34 1e-54 MRLLALDTSNEAMSVAVLDNDRLLAQTTINHKRTHSEQLLPTIDELVAASGLQPEDLDKI IVADGPGSYTGIRIAVTTGKTLAYTLNIALVGVSSLAVLASNISATKAMIVPIMNARRNN VFTGVYQWDKGKLLNVVTDRHVPLTLLLTELSTLHQPVIFVGVDAGMFRSQIIEALGGLA HFAPDWLNLPQALRLGQLGKDLPPVSVYDFVPRYLRLTEAENNWLKAHPGKGHDVYVEKV >gi|225002483|gb|ACIZ01000096.1| GENE 3 1576 - 2109 371 177 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227894610|ref|ZP_04012415.1| ribosomal protein ala-acetyltransferase [Lactobacillus ultunensis DSM 16047] # 1 172 1 174 190 147 42 9e-35 MLRKFRSWFERTTPDELQFKPRTINVRNKEYLLRRMTEADVDAALAIERRIYHDTPWDRY AFFSELRKVRHSLYLAVEDAGQMVALIGTWFTMNEAHVTNIAVDPAYQHMGLGRFLMQFM IGRAIDYGSQKITLEVRTNNEIAKRLYHSLGFQDGRIKKGYYVSNHDDALDMYRELP >gi|225002483|gb|ACIZ01000096.1| GENE 4 2145 - 3167 696 340 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 2 315 514 834 860 272 47 5e-87 MAARELILAFESSCDETSVAVVENGTKILSNIIATQIKSHQRFGGVVPEVASRHHVEQIT LVTDAALKEAGVTYTDLTAVAVTYGPGLVGALLIGVTAAKTIAYAHHLPLIPVNHMAGHI YAARFVKPLVYPLLALAVSGGHTELVYMRAAGEFEIIGDTRDDAAGEAYDKVGRILGIPY PAGKEVDRLAHLGHDTFHFPRAMDKEDNLDFSFSGLKSAVINTVHHADQIGETLSREDLA ASFQAAVVDVLVHKTQKALTEYPVKQLVIAGGVAANQGLKEAMNETLAVHFPDVDVIVPP LRLTGDNGAMIGAAAHIELAKRHLASEDLNADPGLSFAHA >gi|225002483|gb|ACIZ01000096.1| GENE 5 3265 - 3591 430 108 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 95 58.0 3e-20 MAQKTIMLVCSAGMSTSMLVQRMKKAAAADGIDVDVFATAAADADNKLASEPVSVLMLGP QVRFMESQFKAKADEKKIPMAVIDMKAYGMMDGEKVLRQALGLLDQKV >gi|225002483|gb|ACIZ01000096.1| GENE 6 3717 - 5669 1587 650 aa, chain - ## HITS:1 COG:L73239 KEGG:ns NR:ns ## COG: L73239 COG0488 # Protein_GI_number: 15673044 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 645 1 635 635 623 50.0 1e-178 MIILQAQQVGRSFNGNELFANVNLEIQDGARIGLVGPNGIGKTTLLEILTGIAPPDAGQV TTMKNLSIGYLAQNSGLDSDKTIFKEMLTVFAPLQAMARQIHDLEAKLGDPKLIADQAAF AATMKQYDQLQHDFNEQNGYGYEAEIRSVLHGFQFGEDTYDKPVGTLSGGERSRLALAKL LLEKHDLIILDEPTNHLDIETLSWLEGYLKTYPGAILTVSHDQYFLDHVVTEIYELDHHH ATHYKTNYSGYLKQKAERQAQAWKAYNKQQEEIAKLQDFVDKNIVRASTTKQAQARRKQL EKMDVLEKPTGDDKTVHFNFTPNRPSGNEVLKVNQATVGYEADHPMAGPIDFQVNKYDRI AIIGPNGVGKSTLLKSILGKIPFLAGTAKFGANVDVGYYDQEIQQLNPKNTVIDEIWDDH PMMPEKDVRAVLAAFLFGADDIQKPVSALSGGQKARLELTKLALKHDNFLVLDEPTNHLD INSKEVLEQSLKDFNGTVLFVSHDRYFINELATNVIAIAPTGSTTYLGNWDYYQEKLAET KAQAEAAAAESPMTKSETTGATSYQQSKEDARAARKLQREVADLETKLQTLEQQATAIQK QMTAPDVLTDYVKMQKLQTKLDAVQQETKTTEDAWEEKSIQLETMQNEST >gi|225002483|gb|ACIZ01000096.1| GENE 7 5888 - 6541 617 217 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 4 208 6 210 215 263 61.0 2e-70 MAETIIPKATAKRLPVYYRYLNFLANSGTTKISSTELSDAVKVDSATIRRDFSYFGALGK RGYGYDVKDLLNFFKKILNQDRLTNVGLVGVGNLGHALLNYNFRQANNIRISAGFDINPK LAGTIQSGVPIYPMDEMIKQIKDQQIEIVILTVPIDAAQHITDDLVKAGIKGIMNFTPIR ISVPSYVRVQNVDLATELQTLIYFLEHYGPTLNEPEA >gi|225002483|gb|ACIZ01000096.1| GENE 8 6652 - 7017 406 121 aa, chain + ## HITS:1 COG:BS_ytrA KEGG:ns NR:ns ## COG: BS_ytrA COG1725 # Protein_GI_number: 16080098 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 12 116 13 118 130 89 43.0 1e-18 MATESYAHLAYYERLVLQIKARVVQGIMQPGDKLPSVREMAKQEQLNPNTVAKAYKQLEA DGVIFVEPGRGSFIAEPLKHANAAAVATFRPKFDALVVEAQSLGISLATLHTWLNEKEEP A >gi|225002483|gb|ACIZ01000096.1| GENE 9 7014 - 7901 904 295 aa, chain + ## HITS:1 COG:lin2912 KEGG:ns NR:ns ## COG: lin2912 COG1131 # Protein_GI_number: 16801971 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Listeria innocua # 3 287 1 285 295 196 36.0 5e-50 MSLTITNLQKKIDQRPVLEDVTFSLERGQVVGLFGPNGIGKTTIFRTITHQYIADGGTVK VDDHDLATEPAQREAIFYLDQQHLFFRKYSLVKIAANYALLYTDFDQAAFLHLIEKFGLN GTARFQSLSKGYQALVMVALALASQAPYVFLDEPFDGLDVLIREKIVNLVVDAVADGQRT FLIASHNLIELDGLSDRVLFVKGGRISRDLTLEDVRQQAVKLQLVFKTNKIPAVVKQYGR ILNIRGRVIEAVFPDFNQEIQAKLAAEQPVLNENLPLSLSDLFKVEFRPHHSGVK >gi|225002483|gb|ACIZ01000096.1| GENE 10 7901 - 8971 751 356 aa, chain + ## HITS:1 COG:no KEGG:LGG_02244 NR:ns ## KEGG: LGG_02244 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 356 1 356 356 609 92.0 1e-173 MYDHQLLKLVQSRHKVLLRVVLVFVVLLAFLNLGGTIQGYQNRQEYMMSPRDFAIMKKQS AKNHDTTFAKMSYSQYQEEQKYLIAPQDKHKLYSPSFIAYSMTIVSYAIPLLVGMAMAGV DQASGLNAALFTSRFRRRQMFSVRYGYGLAYLLGATTVGIGITLLGFYAAVPAMYVGLSG ANIVGALLLNLAVNSFMFTVGIGVGTIFASPFWMGVFGLFGTWFGMSAIERFINSIRFYG PVKKSFWHTLIPSGNQLFWVLFIGAILASVGGYFLIRWLFDRISLEHSGDVLLLPKLRWL ILAYALVVIPYTFDDWILQNRLISYVVSIGMVIGLGVWWQRREHVGSQTSLKTKTV >gi|225002483|gb|ACIZ01000096.1| GENE 11 9130 - 10188 813 352 aa, chain - ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 20 325 4 319 338 211 39.0 1e-54 METRSNHRQRQKPRRFHWGRLIGLILVVGLFTVGAYALRLYSQAKYAIDNTYHATKHVST DIAQKKPFAVLLLGVDTGADGRIEKGNSDTMIVAVINPKTKKTTMVSIPRDTAAELIGTK EFNMQKINAAYNVGGSDMAINTVSKLVNVPISYYLTINMGALEKVVNAVGGIDVNVPFSF QDPYTGNQKFTKGNMHLNGNMALAYSRMRHSDPEGDYGRQKRQQQVIKAILKKAISVGSL GNFTKLMDTVSKNIATNMSFADMQSIFLNYRDAAKTISTDHLQGVNAWVGDGAYQIASDA EMQRVSNKLRTALGLQTETISNEETKQNAKNSQFDFEATTDQNYIIYTPYDR >gi|225002483|gb|ACIZ01000096.1| GENE 12 10267 - 10911 485 214 aa, chain - ## HITS:1 COG:no KEGG:LC705_02230 NR:ns ## KEGG: LC705_02230 # Name: not_defined # Def: metal-dependent membrane protease # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 214 1 214 214 351 100.0 1e-95 MSLQKHAFSIIGAYLVAFIANLLIFQILPVGRLSLGIVTLISMVALIIAILSERNLVIAN AIEAPGVLAPQQRVFWGVMGIAGVLAAQLVGSWLETILFKMPQTSSQIHQQLSSMTTNPW YFLTIGLALPILEELAFRKVLFGNLVNVTGIFGGALIASLLFAVTQPGGHWLSATLVGLV LAYDYRHTGAISTPIIAHVGALWMVWLYYIAHAL >gi|225002483|gb|ACIZ01000096.1| GENE 13 11064 - 11345 358 93 aa, chain + ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 93 1 93 94 105 59.0 2e-23 MLKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKV GDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAIA >gi|225002483|gb|ACIZ01000096.1| GENE 14 11381 - 13015 1571 544 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 544 3 547 547 609 57 1e-174 MAKEIKFSEDARAAMLRGVDQLANTVKTTLGPKGRNVVLDKSYGAPEITNDGVTIAKSID LEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIE KATKAAVDELHKISHKVNGKKEIAQVASVSSSNEEVGNLIADAMEKVGHDGVITIEESKG IDTELSVVEGMQFDRGYLSQYMVTDNDKMEADLDDPYILITDKKISNIQDILPLLQEIVQ QGKALLIIADDVAGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLEDIATLTGGTVIS SDLGLDLKDTKIEQLGRAGKVTVTKDDTTIVDGAGSKDAIAERVNIIKKQIADTTSDFDR EKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDV LPAVAALKEDGDVQTGINIVQRALEEPVRQIAENAGKEGSVIVEKLKKEKQGIGYNAATG EWEDMAKSGIIDPTKVTRSALQNAASVAALLLTTEAVVADKPEPKDNNAAAAGANPAAGM GGMM >gi|225002483|gb|ACIZ01000096.1| GENE 15 13334 - 13678 380 114 aa, chain + ## HITS:1 COG:no KEGG:LGG_02238 NR:ns ## KEGG: LGG_02238 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 114 1 114 114 197 100.0 1e-49 MKLVQNPIRLNASLHKMLPNTMRYLYSRKPVKYFELYTLGSVHVYYVEGFDQIDIVLTHD KRTIKDTEIDFVLEKLLPDTPKDELKIDHAAKSEIEHEVHRKLKVHDVVIVEKA >gi|225002483|gb|ACIZ01000096.1| GENE 16 13877 - 15703 1659 608 aa, chain + ## HITS:1 COG:lin2235 KEGG:ns NR:ns ## COG: lin2235 COG0531 # Protein_GI_number: 16801300 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 3 608 5 607 607 675 57.0 0 MHLKRLFIGRPLKSSEEGGQQLNIFKALAMLSSDALSSVAYGTEQIVLVLTTLSAAAIWY SLPIAAFVLILLISLTLSYRQIIHAYPSGGGAYVVASENLGKNAGLTAGASLLIDYMLTV SVSVSAGAEAITSAIPALYGHQVAISLVIIFILMGMNLRGMSESANFLMIPVYLFVLVMT AMIIWGLYQVVTGAIPYKATSMVGAAIPGVSMALIFRAFSSGSSSLTGVEAISNAVPFFK LPKEKNAAKTLAIMAAILGFFFAGITFLNYWYGLVPMAKVTVLSQVAKETFGGTGIMYYV VQFATALILAVAANTGFSAFPVLAFNLAKDKFMPHMYLDRGDRLGYSNGILTLALGSAAL ITIFQGSTERLIPLYAVGVFIPFTLSQTGMIIHWFRNRGKGWIGKTVANFSGALISFAIL VILFAYRLFDIWPFFIVMPLAIFLFYKIRDHYDKVAAQLRLPADVEEHDYDGSTVIVLVG NVTRVTRAALNYAQSIGDYVIAMHVSMDENPNKEKETQSEFRADFPDVRFVDIHSSYRSI EAPTIRFVDIVARNAAKRNFTTTVLIPQFVPRKKWQNILHNQTNFRLRAAFASRENVIIA TYSYHLKK >gi|225002483|gb|ACIZ01000096.1| GENE 17 16151 - 18724 2344 857 aa, chain + ## HITS:1 COG:lin1440 KEGG:ns NR:ns ## COG: lin1440 COG0249 # Protein_GI_number: 16800508 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 5 854 2 859 860 882 54.0 0 MPQKTSDTPMMQQYNAIKAQYPDAFLFYRIGDFYELFNDDAIKGAQLLELTLTARNKSAD DPIPMAGVPHHAVQSYVDILIDHGYKVAICEQMEDPKKAVGMVKRAVIQLITPGTNVDIK AGAAKTNNYITAVLPHAAGYAFAYGDVSTGELKVTDLKSKFALQNELSALATKEIVVPED LNDEDAAMLKKGERLLSVQQDTKPTSEGSYVSQDLTDPAEAAVVQMLMAYLLNTQKRSLA HIQKAVAYQPSAYLEMDQDARSNLDILQNSRTGRKGDTLLSLLDATKTAMGGRLLKQWLE RPLLDIDAISVRQNQVQDLLEHFFERSELQERLTKVYDLERLAGRVAFGTVNGRDLIQLQ TSLDQVPAIQDVLSKLDDGSFKELRGKIDPVSDVAGLIRRSIEPEPPISVTDGGLILRGY NEKLDAYRDAMKNSKQWIAELEASERKATGIHNLRIRYNKVFGYFIEVTKSNLDKVPEGR YERKQTLTNAERFITPELKEKETLILEAQESSTALEYDLFQDIREKVKAQIKRLQHLAAQ ISALDVLQSFATVAENNHYVRPTMHAGTHDINVKGGRHPVVEHVLGQDSYIPNDVIMDRD TDMLLITGPNMSGKSTYMRQLALIVIMAQAGSFVPADTADLPIFDQIFTRIGAADDLANG ESTFMVEMLEANAALSHATASSLILFDEIGRGTATYDGMALAQAIIEYLHDHVHAKTLFS THYHELTSLSDSLAKLKNVHVGAVEEHGNLVFLHKMMPGPADKSYGIHVAKLAGLPADLL SRADTILKQLEAATPEKTVPAATSQVEDQQLSLFEEPKPAPKNSPILAKLAKFDLMDATP MDAMNLIFDLQKHLKKK >gi|225002483|gb|ACIZ01000096.1| GENE 18 18729 - 20681 1416 650 aa, chain + ## HITS:1 COG:SP0173 KEGG:ns NR:ns ## COG: SP0173 COG0323 # Protein_GI_number: 15900110 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pneumoniae TIGR4 # 1 645 1 642 649 622 51.0 1e-177 MPKIHQLSATLSNQIAAGEVIERPASVVKELVENSIDAQATQIDVKVSAAGLQTIHVSDN GIGIDPDDVATAFLRHATSKILTTRDLFNVHSLGFRGEALASIAAVADVTLTTATDAGIG AKIHVKGGQVESQTTAAHRRGTDVEVSDLFFNTPARLKYMKSQQTELGKIVDIVSRLALA NPKIAFTVSHDGNMMVRTAGQGDLRQTLAGIYGLPVARSMVDFQAEDLDFKVSGLTSLPE TTRASRNYLSLVVNGRYIKNFQLTKAVIAGYGSKLMVGRYPMGVISIQMDAALVDVNVHP TKAEVRLSKEDQLSHLLSEAIRARLAKENLIPDAMDNLPKRERYDLDQLELTLNKISPKT TAVSHQGTEVRENADTNTENTPTSQPAAQAEAAVDLTINDLDDRPIFDEPQRLAAWDQRY QTLDANVAPALVEDTAASDLKRSEPTERFPDLTYLAQVHGTYLLAESGDGLYILDQHAAQ ERVNYEFYRQAIGEVSNDQQHLLVPIVLDYSAADAINIRTHRDVLEAVGLYLEDFGQNSF VVKHHPTWFKAGQEEDTIKEMVDWVLRDGKISVAAFREKTAIMMSCKRAIKANHHLDDQQ ARALLQKLPQCENPFNCPHGRPVLVHFSNTDLEKMFKRIQDSHESGEMQA >gi|225002483|gb|ACIZ01000096.1| GENE 19 20678 - 21226 540 182 aa, chain + ## HITS:1 COG:BH3033 KEGG:ns NR:ns ## COG: BH3033 COG0424 # Protein_GI_number: 15615595 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Bacillus halodurans # 2 180 4 181 190 157 46.0 1e-38 MIILASYSPRRQALLKRIIPAFESHPAAVNERALPILPPPEYVQSLAKAKGESLVPSYPG ATIIAADTMVAFQGKLLGKPHSRAEAKQMTTALGGQTHQVYTGLWVRLDNGTIRQQVVAT DVTFWPLDEAEVESYLQEDAYQDKAGAYGIQDAGALLVKAINGDFYNVMGLPISTLYRML LA >gi|225002483|gb|ACIZ01000096.1| GENE 20 21324 - 21818 393 164 aa, chain - ## HITS:1 COG:no KEGG:LC705_02220 NR:ns ## KEGG: LC705_02220 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 164 1 164 164 299 100.0 2e-80 MIILLLIIGAVAFFWTMVLMKPNRRRPLAIAVSALLIMIPVVLLSLNDLYHIGFTIDETT ELQPLAPMNDQLQIQSHPIGTAKKHMAYQYRISGDATIHTVKPSTTVKTKLTHGTIPQVA VTAQKLEYTNIFTAIMFAGSGEQGKTIGKIYTFTLPSNWQVVSF >gi|225002483|gb|ACIZ01000096.1| GENE 21 21815 - 23269 909 484 aa, chain - ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 5 475 11 481 493 462 55.0 1e-130 MTTTDVNGHPYNRLLLVITLLIGTFTTFLTQTILTTAYPTLMADFHISASAVQWLTTGFM LIMGIMIPVSAWLLDKFNVKHLYLTAMTIFFLGSLLCWLANDFQMLLLGRLIQAIGVGMS MPTFQTVMFTIFPPEKRGSAMGLAGIVIGLAPAIGPTLSGWILLHHTWRALFAVIMPIAA GVVLLAIYSMRQVLPTSHPKIDVPSIIASTLGFGGLLYGFSTVGDAGWTDSQVLISLAIG IVFVALFCWRQLHLKTPLLELRVFKSKTFTLSVILTAVAFMSMVGVEMVLPMYIQTIRGE SAFHSGMILFPGAIMMGIMSPITGRIFDKIGAKRLAVAGLFLLVAGTLPLMTVTATTPLI YITAIYTVRMFGITMVTMPVTTAGMNALPTHLINHGTAVNNTIRQVAASIGTAILVSVLS VVTKGATPSASGKVLDPIDYTNAMHQATLAGYRAAFAVSLVMAALGLVLSFFLNNDAMDR RHPS >gi|225002483|gb|ACIZ01000096.1| GENE 22 23435 - 24436 666 333 aa, chain + ## HITS:1 COG:no KEGG:LC705_02218 NR:ns ## KEGG: LC705_02218 # Name: not_defined # Def: acyltransferase 3 # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 333 1 333 333 614 100.0 1e-174 MKVRSSHQRIEWIDVAKGLGIIAVVLGHFYPRNTTFYESLYWWHMPLFFMIGGFFVKPTT LPTLKAFLARRFWPLLKQYFGYGVGLILLNFIIEQRTPAFTVDYLRRLIYGGTELNGYLS VFWFVTVYAFSSLLFSLLRGYLPKVWHEAILMAGLFWLGFSYPNAENVLGFPIPGNLDLV LVALPYMFVGWWLFHYARHIVTQPWFMLVALGVFAGLFVAQSRGQIDFLLYMKSHHLTDP LLASFVPVIICGGLFAGAKTLTGTVLGDWLDRIGRSTLPIMYGHKAVGYVLEKLGDPNLL VLVAAGVTIPLFLAYAGRYVRERWQGGGLYAFN >gi|225002483|gb|ACIZ01000096.1| GENE 23 24423 - 25220 658 265 aa, chain + ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 31 265 47 289 289 141 35.0 2e-33 MRLIKRILLVVAVLIIGLAPSGQLVEADTTPTIFVHGYRGTAFSTNQLIESAEAAGVAKR SMVVTVSPNGQLNVQGDLHATAAPIIQVIFQNNTAGEEVDSQWLAKILTMLHQRYGVTRL NAVGHSMGAYAVIAAAMAQTPVELEKVVVIAGPYDGLLGWNDKPHELQLAADGRPSLIRP EYARLLQRREHFRAKSVLNIYGNVQDGSDTDTVVSVNSALSLGYLLRGLTKYQTLAVTGP HAQHSRLHEHNVAVDRAMLQFIWGK >gi|225002483|gb|ACIZ01000096.1| GENE 24 25451 - 25837 318 128 aa, chain - ## HITS:1 COG:no KEGG:LC705_02216 NR:ns ## KEGG: LC705_02216 # Name: not_defined # Def: magnesium\cobalt efflux protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 128 335 462 462 258 99.0 6e-68 MTDKDIYEELFGTVKDEIDDVSDEYIRKTDNPKVFRVSGKTTLWDFERYFHTDIKAFTDS EIITIAGFIMETHPDLKLHDKVKIDHFNFTVADFSRGFANWFDVTEDPKPVKQTVAEEVK EAKSQHQD >gi|225002483|gb|ACIZ01000096.1| GENE 25 25856 - 26839 1142 327 aa, chain - ## HITS:1 COG:L84992 KEGG:ns NR:ns ## COG: L84992 COG1253 # Protein_GI_number: 15673816 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 6 327 1 316 430 213 34.0 6e-55 MESGQIVPNLLVMLVTFFFAAFFVACEFALVQSRPSALEDMIDKGTGRKAKIERALRMVH NLNEYLSTTQVGVSLAGIILGWIGETTVEFLLVDLFGLTHLSLPNGSLHAVGAVLGVIIL TYLEVVLTEIVPKNISIDYPIKTLMLVVTPLHYFHILFFPFVWLLNVSATGIVKMMGMKP ADEGNEAFSQAEILSLSKNAVTSGDMEQNDVIYMQRAFELNDKTAKDIMVDRTSLFVIDI NTTVKEALRDYLTQGYSRFPVVANGDKDKILGYVYIYDLVKQGQVDPSVKVSKLLRSIIN VPEVTPIHNILAQMIKKQTPIVVVVDE >gi|225002483|gb|ACIZ01000096.1| GENE 26 27145 - 27894 659 249 aa, chain + ## HITS:1 COG:CAC2549 KEGG:ns NR:ns ## COG: CAC2549 COG4295 # Protein_GI_number: 15895811 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 55 244 85 276 282 94 32.0 2e-19 MEQVKMYWETMKVFKANPEMPKTELISQPLPQTPAQGSTAPQIAIRNVDVFQLMSELTGK IGVMNFASPIHPGGGVMFGARAQEESIAKGTFLVPALKQHMADYYDVNCQQANRGLFSSK LIYAEHVRQVFDDQGRRLPNKYVDIVTVAAPDRRVDPQLDDETAMHDIAFKVLQTLRAFK MHAVDQIILGAFGTGVFGNPVKPVAKIFRDTLLMPEFAGAFKRVYFAIYNPGMTTIKAFA AVLKGEDEQ >gi|225002483|gb|ACIZ01000096.1| GENE 27 27913 - 28533 616 206 aa, chain + ## HITS:1 COG:lin0511 KEGG:ns NR:ns ## COG: lin0511 COG0518 # Protein_GI_number: 16799586 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Listeria innocua # 1 203 1 201 226 117 36.0 2e-26 MKLTVMQHANAEDLGVIKEWAADQGIETVTYRPDQGDPIAQLNPADIDGLIVLGGPMSVN DDLDWLAAERILIRSLNKLNRPVLGICLGAQQITKAFGANVYRMPKPEEGIGTVKGTDGT LLNVFHWHGEAMSRLPGSQILYENEHALQGFAYHERIVGLQFHLEVTPAMITAIGAVADK PQAPVNEALLEPGHQVLTAILERLFK >gi|225002483|gb|ACIZ01000096.1| GENE 28 28813 - 29811 1008 332 aa, chain + ## HITS:1 COG:no KEGG:LC705_02213 NR:ns ## KEGG: LC705_02213 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 332 1 332 332 356 100.0 7e-97 MKKLLSTVLFSAVALSAVALSKPGHVNAATKDTDTTVSAPASDKTEADVTYNGGATTVWT SPTVGQQVKRYVATGEHLKFINSKKVYAEIWYETSDHGWVPERYLSINTLQQLSSLTKKA DATAVPTQTTSTAEQVAQTSTDNNQAASDAAAQSAAASNAAASSAAASSAAASSVAASNA AASSAAQAAAQQQAQQQAQQQAAAQQQAQQQAAAQQQAQQQAAASQAAVQQQQAPATQTT QTSTNKGTFKISFYDPSVLGSNMGYEGVAANLSVFPKGTKLRITMSNGQVLERTVNDTGS FAYSNPRQLDVAMQGKDIPSAGVLSATVEVIN >gi|225002483|gb|ACIZ01000096.1| GENE 29 29924 - 30481 367 185 aa, chain - ## HITS:1 COG:mll3908 KEGG:ns NR:ns ## COG: mll3908 COG0500 # Protein_GI_number: 13473347 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Mesorhizobium loti # 7 103 4 109 242 58 33.0 5e-09 METPYPNMQDNPNLPVESGDHQPIWQALIKKMPPLTDLRVLVIHCGDGWFCRYALNHGAT AVLGIDTDTEAIQNARAAASSDRLRYRIMPDRWLKLLTGPYDLIVGAFDQSPAELKAITQ VLSALLNAKGQLVAAVAPPKQPTGDQLAVEELISSQLVINRWYQVTDKRLAETAQLYLLL SSRVH >gi|225002483|gb|ACIZ01000096.1| GENE 30 31029 - 31571 584 180 aa, chain + ## HITS:1 COG:L24031 KEGG:ns NR:ns ## COG: L24031 COG1268 # Protein_GI_number: 15673763 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 4 170 8 177 189 113 43.0 1e-25 MHTKTLTRMGLLLAVLIGLAFAPPITVGFLGVPIVLQNMGVMLVAMLLPTRPATITIGML LALAALGLPVLTGGRGGIAVFMGPTAGFMYGWLLTPLAYAGITHFLKRDFWLTKAIGMTF GGVLLTELLGALWLTATTSIGFVPAILSVLIYIPGDLLKMALTVLVVQQLTAVIPALRQN >gi|225002483|gb|ACIZ01000096.1| GENE 31 31719 - 32084 288 121 aa, chain - ## HITS:1 COG:no KEGG:LC705_02210 NR:ns ## KEGG: LC705_02210 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 121 1 121 121 224 100.0 6e-58 MKLYQGLTQVQVNEEMADDAPDFKITTDLVKPLHYAPSELYHYLDAVLKPGSRHDQNNLK YVTDAAFIGENFDFNSVPFTAKLKDFEAKMAFARNLVSDLNRHVAVNINTQDHTFELLFV D >gi|225002483|gb|ACIZ01000096.1| GENE 32 32124 - 33266 815 380 aa, chain - ## HITS:1 COG:lin0933 KEGG:ns NR:ns ## COG: lin0933 COG1600 # Protein_GI_number: 16800004 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Listeria innocua # 3 377 13 375 380 419 54.0 1e-117 MDLKATIKQHAKDLGIDKIGFTTADNFAALKPSLLAQKAAGHTTGFEHQNLDERLYPDKI FDQPQSIIAIALAYPSKIHDRPPRTGPKRGRFARASWGIDYHTVLDRKMAALIRFIKKTA KSQTDIRFKPMVDTGELIDVAVAQRAGLGFIGKNGLLITPEFGSYVYLGEIITNIKFAPD EPMSCQCGTCTRCIDFCPPHALLGDGRMNGQRCLSYQTQTKGFMDPEFRPMIRNVLYGCD ICQQVCPFNKGKDFHVHPEMEPDPDTVMPELIPMLTLSNKGFKNRFGKLAGAWRGKKPLQ RNAIIALVNLHDRSAVPHLLEVIDTDPRPMIRATAAWAVSELAATPNAELTTFLEKAQAK ETTALAQAEFQKALERIAQR >gi|225002483|gb|ACIZ01000096.1| GENE 33 33555 - 34343 653 262 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 6 261 46 297 298 154 38.0 1e-37 MEPFVLNIKNGLNFRDLGGYKTKSGQVIKSRKIIRSARLSELSDDDLQYLADYGLTTDVD FRSPEEQAAEPDRYPENTTYHFVPVFPTDETKSSEQADALQKSFSRDPHAGFENMVKTYA DIVKMPSAQKAYRQFFDILLSHQENDGAVLFHCTAGKDRTGMGAVYLLSALGVDGHTIRQ DYLATNDLIQPMVEKNLAAARKRGATDALLANIRDLGTVSGAFLDSALATIDAEYGNMHN YLKEALQLTDAEKRDLRELYLQ Prediction of potential genes in microbial genomes Time: Wed May 25 20:11:37 2011 Seq name: gi|225002482|gb|ACIZ01000097.1| Lactobacillus rhamnosus LMS2-1 contig00105, whole genome shotgun sequence Length of sequence - 36056 bp Number of predicted genes - 30, with homology - 30 Number of transcription units - 18, operones - 7 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 45 - 104 2.5 1 1 Op 1 . + CDS 259 - 873 412 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 2 1 Op 2 . + CDS 903 - 1820 669 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 3 2 Tu 1 . - CDS 2011 - 2181 216 ## LGG_02213 hypothetical protein - Prom 2219 - 2278 4.2 + Prom 2220 - 2279 3.3 4 3 Tu 1 . + CDS 2308 - 2796 568 ## LGG_02212 hypothetical protein + Term 2887 - 2932 4.2 - Term 2572 - 2612 -1.0 5 4 Tu 1 . - CDS 2800 - 3036 212 ## LC705_02200 hypothetical protein - Prom 3121 - 3180 4.8 6 5 Tu 1 . - CDS 3251 - 4270 708 ## COG1816 Adenosine deaminase - Prom 4441 - 4500 5.8 + Prom 4284 - 4343 4.0 7 6 Tu 1 . + CDS 4369 - 5673 1210 ## COG0213 Thymidine phosphorylase + Term 5799 - 5844 -0.3 + Prom 5816 - 5875 8.7 8 7 Op 1 31/0.000 + CDS 5905 - 7329 1356 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 9 7 Op 2 5/0.000 + CDS 7326 - 8339 1028 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 10 7 Op 3 14/0.000 + CDS 8336 - 10078 198 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 11 7 Op 4 . + CDS 10059 - 11786 211 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 11828 - 11877 8.1 + Prom 11953 - 12012 6.2 12 8 Op 1 . + CDS 12048 - 13148 1116 ## LC705_02193 hypothetical protein + Term 13191 - 13224 1.3 + Prom 13249 - 13308 2.5 13 8 Op 2 . + CDS 13335 - 13760 416 ## COG5341 Uncharacterized protein conserved in bacteria + Term 13776 - 13812 5.2 + Prom 13838 - 13897 4.8 14 9 Op 1 8/0.000 + CDS 13972 - 15666 1219 ## COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components 15 9 Op 2 . + CDS 15659 - 17281 195 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Prom 17308 - 17367 4.0 16 10 Tu 1 . + CDS 17414 - 18286 780 ## COG3711 Transcriptional antiterminator + Term 18370 - 18426 15.3 + Prom 18360 - 18419 3.0 17 11 Op 1 8/0.000 + CDS 18610 - 20445 1469 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 18 11 Op 2 . + CDS 20464 - 21912 1082 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 21960 - 22015 6.1 + Prom 22237 - 22296 3.5 19 12 Tu 1 . + CDS 22373 - 23158 245 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 23176 - 23228 6.6 - Term 23171 - 23210 7.1 20 13 Op 1 . - CDS 23225 - 23869 353 ## LC705_02184 hypothetical protein 21 13 Op 2 8/0.000 - CDS 23862 - 24728 680 ## COG1131 ABC-type multidrug transport system, ATPase component 22 13 Op 3 . - CDS 24718 - 25113 426 ## COG1725 Predicted transcriptional regulators 23 13 Op 4 9/0.000 - CDS 25132 - 26403 1059 ## COG1668 ABC-type Na+ efflux pump, permease component 24 13 Op 5 . - CDS 26406 - 27293 809 ## COG4152 ABC-type uncharacterized transport system, ATPase component - Prom 27335 - 27394 7.6 - Term 27464 - 27516 0.3 25 14 Tu 1 . - CDS 27571 - 28776 856 ## COG0282 Acetate kinase - Prom 28879 - 28938 8.0 - Term 28813 - 28851 7.2 26 15 Tu 1 . - CDS 28998 - 29966 804 ## COG0142 Geranylgeranyl pyrophosphate synthase - Prom 29994 - 30053 2.9 + Prom 29749 - 29808 3.1 27 16 Op 1 . + CDS 29958 - 30956 641 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 28 16 Op 2 . + CDS 30993 - 32057 716 ## LGG_02180 metallophosphoesterase + Prom 32981 - 33040 4.9 29 17 Tu 1 . + CDS 33077 - 34981 1883 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) + Term 35002 - 35056 14.2 - Term 34990 - 35043 6.4 30 18 Tu 1 . - CDS 35094 - 36038 690 ## COG0053 Predicted Co/Zn/Cd cation transporters Predicted protein(s) >gi|225002482|gb|ACIZ01000097.1| GENE 1 259 - 873 412 204 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 31 199 7 175 185 163 47 2e-39 MTNAHDRAEQVKTEAALRKYQARKQYTDWLAKMSPELRAYHDHEWGVPVHDDQKLFELLS LEIFQAGLNWELVLHKRAAFNDAFHQFDIKKVAAMDEPDIDALLQRTDIIRNRMKLEATV TNARAILRIQAAYGSLNDYLWAFVDGKPLVNRPKSLAEIPTRSALSVKIAKDLKKNGFAF VGPVIVYNYLQGAGLIDDHVVMQD >gi|225002482|gb|ACIZ01000097.1| GENE 2 903 - 1820 669 305 aa, chain + ## HITS:1 COG:BS_ydeD KEGG:ns NR:ns ## COG: BS_ydeD COG0697 # Protein_GI_number: 16077583 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus subtilis # 5 292 6 296 319 187 35.0 1e-47 MKRIRLWGIFLAILGSSLWGISGPVSEALFDEGIKVSWLISSKMIIAGVVLMTLAVWKDR AAIMSPWRNRRDAIQLILFVLFGMIGMQYIYFKAVAVANAATATILQYLSPVIVLVFLAL RLREKPRRIDLFTIAMAMLGTMLVVTKGRLTHLAISPSAFFWGVMAALAAAAYTLLPAGL LKRHSPIVVTAWAQLLGGLLVDIFDPFWKQIPHLDQAGWAGYWFIVIFGTIVAYSVYLAS LQFISPTAATLLDAFEPLGATLVSVIFLHMHLGVAEILGGMIIILTVAMMALMTPRGPKL EDRSD >gi|225002482|gb|ACIZ01000097.1| GENE 3 2011 - 2181 216 56 aa, chain - ## HITS:1 COG:no KEGG:LGG_02213 NR:ns ## KEGG: LGG_02213 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 56 1 56 56 94 100.0 9e-19 MPTNQTPYPIIDYLGRPIQLQLFVTYRLRVKNGYILALRRNQHQQALPNLLVKHAS >gi|225002482|gb|ACIZ01000097.1| GENE 4 2308 - 2796 568 162 aa, chain + ## HITS:1 COG:no KEGG:LGG_02212 NR:ns ## KEGG: LGG_02212 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 162 1 162 162 301 100.0 7e-81 MDQFSISNLADWLEAHNDELMAKTTQLDPTKVFAIVDYLKVLKKPAEKYLHMKQADYYTT ESDHKLNLPDDQAPLTAAHDRIMVNHVDGSIKDDHLNFTYNHEPVFDGGYAPQRDLNIVK YGLEVIGAVATSGHIKTVSAALSPDAVLTLILAANAFATHQA >gi|225002482|gb|ACIZ01000097.1| GENE 5 2800 - 3036 212 78 aa, chain - ## HITS:1 COG:no KEGG:LC705_02200 NR:ns ## KEGG: LC705_02200 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 78 1 78 78 136 100.0 2e-31 MLINQTDFIATQLQQIVYPNITAITETGASITIQTNQKQRDDPAFWQSISAILKAHLWVP VSKKYHELTDHDWLASPV >gi|225002482|gb|ACIZ01000097.1| GENE 6 3251 - 4270 708 339 aa, chain - ## HITS:1 COG:L87453 KEGG:ns NR:ns ## COG: L87453 COG1816 # Protein_GI_number: 15672269 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Lactococcus lactis # 11 335 20 347 352 261 42.0 2e-69 MDFATLHTLGKTELHCHLDGSLSLNCIRQLAQKINQPLPADDNALRKLVQAPENSENLAD YLKTFDFIAPLLQTKEALQMAAFDVVAQAARENVRYIEIRFAPVLSTAGDLTLSQATEAV ITGLHQAMAQFDIIAKVLVCGMRQLPNADNAAMFTANAPLVGDTLVGGDFAGNEADYPTK VCAPAIETAQRLGVPLTFHAGECHCPQNIAEAIRLGIPRIGHATACFDRPELIQTIVKTH TTIELCLTSNLQTKAARSLAEFPYQALKKAGAAITINTDNRTVSNTTLTHEYERYQAYFD TTAADFLTFNLNAVNAAFIPETTKQTLRMRLKQDYAPYL >gi|225002482|gb|ACIZ01000097.1| GENE 7 4369 - 5673 1210 434 aa, chain + ## HITS:1 COG:CAC1546 KEGG:ns NR:ns ## COG: CAC1546 COG0213 # Protein_GI_number: 15894824 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Clostridium acetobutylicum # 1 432 1 431 433 425 52.0 1e-119 MRMVDLITKKRDHGELTDDELTWMIQQYTAEKIPDYQMSAFLMAVYFNGMSAAERDHFAF AMLHSGDVLDLSDIPGIKVDKHSTGGVGDKISIPLAPLVASLGVPVPMISGRGLGHTGGT LDKLESIPGFNVNETEAQFKHQVQTLHQAIVSASRDVAPADRRIYALRDVTGTVESIPLI AGSIMSKKLASGTDALVFDVKVGNGAFMKTSEDARALAKALVSISQAAGVKSVALLTDMN QPLGITIGNSLEIAESIAILKNRGPRDVHDLTVALAAQMLVLGKKAPSLEIATGLAEDAL RDGRALNAFKQLIQAQGGDPAVVDDPRKLPQAAYRIPVKAEQSGIVTAIDTNALGVAAMQ LGGGRAQKGDTLDLAVGLVLHKKLGTPVTKGDTLVMLHANDQHVDAIVELVRQAYHIGTT APKKLPLIHEVIRP >gi|225002482|gb|ACIZ01000097.1| GENE 8 5905 - 7329 1356 474 aa, chain + ## HITS:1 COG:BS_cydA KEGG:ns NR:ns ## COG: BS_cydA COG1271 # Protein_GI_number: 16080927 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Bacillus subtilis # 5 472 1 463 468 492 53.0 1e-139 MLMAMDVLSLARFQFAMTTVFHFFFVPFSIGMGLVAAIMETMYVRKKDETYKKMAKFWGK IFLLSFAVGVVTGIIQEFQFGMNWSNYSRFMGDIFGVPLAIEALLAFFMESTFIGLWMFT WDRFKPAVHAIFIWMTWLGTTLSAIWILSANAFMQHPTGFAISQTTGRVKLVDFGAVITN PQLWVEFPHVIFGAFTTAGFAVAGMAAWRLLKKDHVDFYKKSLKVGLVVGTIASACAIGF GDLQTQFIIKDQPMKFAATEGIYKDTSDPAPWTLVELINTKDHTTSGNIEVPYLLSLLSY HKMNGSVKGMETANKELEAKYGKDKNYYVPVKTLFWSFRVMAGGGVLLFLLGVLGLWFSR KKKDTLLDQRWLLYILGFALWLPFIINTAGWFITELGRYPWVVYGLYTIADAVSPTTTAG QLLFTNICYFLIFTLLGGVMIYYSHRVLKNGPDGDLNTDYGVNSDPFAKEAFAK >gi|225002482|gb|ACIZ01000097.1| GENE 9 7326 - 8339 1028 337 aa, chain + ## HITS:1 COG:L109201 KEGG:ns NR:ns ## COG: L109201 COG1294 # Protein_GI_number: 15672687 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Lactococcus lactis # 1 330 1 330 331 301 51.0 1e-81 MSWLQILWFFLLFVLFSGFFVLEGFDFGVGMSTKLLAHNSDEEDQLVATIGPHWDGNEVW LITAGGAMFASYPMWYASLFSGFYIMFFLVLFGLIVRGVSFEFAAHAETKTGRNIWRWAL ACGSLIPPFILGMIFTAIIQPLPITKNGDVFPTLGNQINLLTIVGGVAVTLMMLMHGLNF IRLKTTGDLRKRARDWNSKLYYLLYAGEVVFAVLLFFMTDFFKERPISTLLILVIIVGST VAAHIGVLKDNEVLSFIGSALGLVGVVGVIFNGLFPRVMIGQNAAMSILAKDASASPLTL TIMTIVAVILLPIALAYFIWSYVVFHKRIQAKGAVSE >gi|225002482|gb|ACIZ01000097.1| GENE 10 8336 - 10078 198 580 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 350 566 147 361 398 80 31 1e-14 MIDKTLLRLSGMRKTMTMLAGFALVQAFVILLQGKYLAEGIVHSWNRQSLAGLWLPLGFF AAAFTVRQLIVWVRNRIAAKFAMKSAAWLQAQLLRHLFALGPAAVAKEGTGNLVTMALDG IPEAENYIELILNKILNMSIIPWILVAYIWYENWLTGFTLLIMFPIIILFMVILGLAARD KSESQYAGFQKMSNHFIDSLRGLKTLQLMGISREYANNVYEVSEDYRKQTMGVLRIAMLS TFALDFFTTLSIAVVAVFLGIKLMDGTIPLYPAMVALILAPEYFMPIRDFGTDYHATLNG KNAMTAIWKVIDQPLPTDTHVLPAFKGWQPQDTLSMQHLDFTYADKRAGIQDANLTFTGP EKVAIIGASGSGKSTLLNLIGGFLQPQAADITLRGTKIPHMTQTAWQDHLSYIPQDPYLF ADTIAANIRFYRPDASDQAVRDAAESAGLTTWINSLPDGYATRIGEGGRGISGGQAQRIA LARTLIDTNRSIWLFDEPTAHLDIETEAALKETLVPLFANRLVIFATHRLHWLNQMDRVI VVDGGKIVAEGTPTELAAHSKPYQALVHEMRGEFNALVEK >gi|225002482|gb|ACIZ01000097.1| GENE 11 10059 - 11786 211 575 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 336 557 2 226 245 85 29 3e-16 MHWLKNEHWVRPDLKRYRWLLFWSLILGIMTFVFAGALMFTSGFLIDKSATKPLFAAIYV TVVLTRAFGVGRPVFQYAERLTSHNWVLRITSHMRRKLYKVLETDAAFVSEHHQTGDILG LLADDIGHIQNLYLRMIFPTVVGAGLTVIATLLLGWFNWGFALWILLLLLFQILILPWWG LVVERFRKAEQKQLNHDAYVSLTDSVLGLSDWVITHRDQDFMKQSLAAPKKLAVSTAKSK RFQWGRDFIGQLLFALIAVSMLIWTNLEWTGNQSMANWVGAFVLVVFPLDQAFSGIAQGV GEWPTYRDAIRHLNDLHPVTRELPQQQPVPTTFNKIELNDVSFRYTPSDPELITNIDLTI QAGEKIAILGPSGMGKTTLLQLVLGDLTPTNGHVLIDGQDVLDYQNHRTNLFAVLDQSPF LFNTSIVNNVRLGNEDASDETVAAALKAVKLDQLVAQLPNGMNSSVEEAGFGFSGGERQR LSLARILLQDAPIVLLDEPTVGLDPITEQALLNTMFTVLKGKTILWVTHHLQGVSQTDRV IFLEDGRLTMNDSPQHLAEQNKRYQNLYALDAGLR >gi|225002482|gb|ACIZ01000097.1| GENE 12 12048 - 13148 1116 366 aa, chain + ## HITS:1 COG:no KEGG:LC705_02193 NR:ns ## KEGG: LC705_02193 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 355 1 355 366 549 100.0 1e-155 MEKVAIIGATLLLSIGLVACGGGSGSSSSKSSSTTSQTSNAKVKIKTGADANAKVPAAGT LVMRQLYAAPHGKQSFAAVNVTLNGDTIVSARINEFQYVKKSSDWTGVPNSNKDFGKNYP SGQILIAKAENSKPYSALMKKEAKATHTWEENETAITNFVKGKKISDLKAAVAEVKGTKK VSDVVSGATFADTAGYLQAIYDAATTGMVAEGIQTTDPNLTEGQVLAAPHGTQSFGIVTV AMQGDKIANVFLDEFQYMPAKDFGAVPNSNTDFGKGIKAGTVLASKRANSDAYSAIMKSK GKATKTWQENSTAIDEFAKGKTVAELETAVSDLKGKKKASDVVSGATFTDTAGYLAAIIK AAKAAK >gi|225002482|gb|ACIZ01000097.1| GENE 13 13335 - 13760 416 141 aa, chain + ## HITS:1 COG:lin0431 KEGG:ns NR:ns ## COG: lin0431 COG5341 # Protein_GI_number: 16799508 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 126 1 126 140 134 50.0 4e-32 MRWLKRYVRPLDYVIVVLLFIACFIPAGIFSLTEANVNTSQKVAVISVNGQVKRRIKLGA HTRHQQFTLYPAKGQYNIIEVDGERIRDKEDNSPDQIAVHTGWISRIGQQSICLPHKLLI EIKPAQGNHGSNGDAGGLVHP >gi|225002482|gb|ACIZ01000097.1| GENE 14 13972 - 15666 1219 564 aa, chain + ## HITS:1 COG:SPy1791 KEGG:ns NR:ns ## COG: SPy1791 COG4988 # Protein_GI_number: 15675630 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components # Organism: Streptococcus pyogenes M1 GAS # 74 560 99 585 587 211 29.0 4e-54 MFGLLKYGRDQRWAGVIEALFDWLPTLLPILIALNLGTGHQVTALVTTLVLMAVWLGYVV GYERHHRHAWAMSAKRELRDRYFTALYRRNDAVATTAADHAVIQRDLGGLNNLDMFYSTL FPTILQAGMTFLVLIGLSFWYRSWLALLPFGCVFLIGLAMMFLGKRMSAQNKAHLSGFLK MGGRFMDDLRGMTTLVMYDAADRYAQKFADDSEFFRQATMNLLKTQLQTLFVINGFVYLT VFAGGFITAVQLVAGQLPVAGAFATWFTLAMMMVNARQLGYFVHVVKSNGPSLAAILATI AKAKAAPDTVKITDNRPLSQITLDQVSIGYAADAPLVTGINATLVPGKLYGLAGENGTGK STLIQAILGRLKPLSGAIMADQTAVSALSNVQQAAVFGYVTANEYLFSGTIQENLLLGNR FGDQWQARLASLGLMQFVPSLEKGYATQVGENGRLLSPGQRQQLAFARMLLADKTVYLLD EITSSIDEANAAIILQAVKKLSRHKIVLFISHDLKAMTQADEVWFIHDHQLTVANHQRLY QKQPAYRQLVDNPEMMENEVNSND >gi|225002482|gb|ACIZ01000097.1| GENE 15 15659 - 17281 195 540 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 327 527 134 334 398 79 31 2e-14 MIRGLLRYTHHLTGAIFISFLIGMVAELAKVVVLVLAAMMLFDPQNAGQLLLPGLIAIIL LGLGSFGEQYSGHYVAFHVLADLRGAVYRQLVKLAPAKLDTQASGKLLKLIGSDIEAMEI FYAHTLVPVAIGLVYGLLVVGIYSQLNWLAAIIALISYVAVGMVVPYARHRQLTAKTQAA DRLKAANQQYLLESVRGMAVVRQLGIAKQRMTKGNEGFDQEAAAFQQAQFSQLLKNVAAT VVIVGGWLLMIWLSGWQQPTAIQQALLAIFPLTFGPLLALNNLPGSLLNGLAAARNLFNL LQEQPLNAASPNANRVVTAINRIQVDQVSFSYPTRPEAVLKDVTVTLNAGEIVGFVGASG SGKSTLAKLIMGWYPVSHGQILIDGNDLATIKPTALRNQMNYLPQTPVFFSESVRDNLTL HDPAITDQQIWTVLDQVKLRARLEQMSHGLDTVVAASHVPFSSGEQQRLELARALLHPSS VLVLDEPTSNLDTENERLILETIKTYYHGIVILISHRPESAAFADRVYRFSEHQVVLVTE >gi|225002482|gb|ACIZ01000097.1| GENE 16 17414 - 18286 780 290 aa, chain + ## HITS:1 COG:BS_licT KEGG:ns NR:ns ## COG: BS_licT COG3711 # Protein_GI_number: 16080959 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 281 1 275 277 157 31.0 2e-38 MIIDAILNNNAVVVRRDKRDIIVVERGIGFHAKKGDQLTLQDSMKIYVPEDHAKLKIAMA TIASLPDEYLTIAARIIQEAEVQLHTKFNSYLLIELADHIHFAVTRLHEQLILHNKLLWE IQIAYEPAFRMGEWALTEIANQIGEQLPEDEAGFIALKFVSNDLSQQHPVNSVAFTQMLA NITKIIFYQLGLNMNAKTPEYQRLVIHLKFFLQRVYATSTAKTPVSPEPYDQALLAHLQQ DYTQAYRCMEDVVKFMQQKLPGPISKNEQIYLTLHIARLAKSQGQSLKSS >gi|225002482|gb|ACIZ01000097.1| GENE 17 18610 - 20445 1469 611 aa, chain + ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 107 446 4 347 368 298 48.0 1e-80 MGETALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQ FQVVIGNNVSDVYQEVVKLEPSLSDGTEGPATVTHEKMTFKRAFNGLLTFISGVFTPFLG AMAGAGILKGLLSLAVVLGWLTTKSGAYQIWWAAADGIFYFLPLALAFTAAKQLKVNQFV AMAIAAAMVYPNIVALVGKPSIDFFGIPVVAANYTATVLPILLVVVVQKFLEPFFNRIWH ESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQV FVIFGVHWALVPVMMNNIALYGTDPMMPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSS TITALFGITEPTIYGITLKLKKPFYCACVAGAVGGIIVAMSGAGANVASLASILSLPTYL GKGFGVSVIGDVVAFVLGVGLTLAFGGINAPAKNQAAAEVVADHAETLAAPVKGTLVTLS DVPDEVFASGTMGQGIAIEPEENVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGID TVNLKGKHFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVMMIVTNSDQYQVETRSDG ATDDDALMTLA >gi|225002482|gb|ACIZ01000097.1| GENE 18 20464 - 21912 1082 482 aa, chain + ## HITS:1 COG:L89194 KEGG:ns NR:ns ## COG: L89194 COG2723 # Protein_GI_number: 15673441 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 4 481 1 478 478 666 67.0 0 MNNLKFPKQFMWGGATAANQLEGAYHEDGKGLSIADVLPQGKDRFAIVNQPDFDWTIDES KYRYPNHLGIDHYHHFKEDIKLFSEMGFKCYRFSIAWSRIFPEGDEQQPNQAGLAFYDAL IAECLKYGIEPIVTISHYEMPLHLVTKYGGWKNKALITFYKRFAETVLTRYFKQVKYWMT FNEINSAFSFPVMSQGLVASNGADDKRNIFQAWHNQFVASAWTVKIGHELDPQLQIGCML LYATTYSYDANPVNQLATLQQNQAFNFFCGDVQVRGEYPAYTDAMMDEYGVKFQDLEFSA AELALLKHYPVDYIGFSYYMSAVIETTQEHHAEVGGNLLSGLKNPFLKASEWGWQIDPIG LRIALNQLYDRYRKPLFIVENGLGAIDRPDEKGEVQDDYRIDYLRQHIEQMGAAIHDGVD LMGYTPWGCIDLVSASSGQMSKRYGFIYVDLDDDGEGTLARSKKKSFDWYRRVIASNGAD LA >gi|225002482|gb|ACIZ01000097.1| GENE 19 22373 - 23158 245 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 248 4 238 242 99 30 4e-20 MYRDLNGKVAVVTGGSKGIGAGIAERFGKEHMAVVINYLGDHEGARKTADTVIKNGGQAV SIHADVSTEAGIASLVKTAESEFGRLDVWVNNAGMEIKAPTHEVSLDDWNKVIAINQTGV FLGARAALNYFLDHHQPGNIINISSVHEQIPWPTFASYTAAKGAVKLFTETIAMEYANRG IRVNAIGPGAIETPINAEKFADKAQYDQTVAMIPQGRLGKPEDVAAGAAWLASTESSYVT GTTLFIDGGMTLYPAFKDGQG >gi|225002482|gb|ACIZ01000097.1| GENE 20 23225 - 23869 353 214 aa, chain - ## HITS:1 COG:no KEGG:LC705_02184 NR:ns ## KEGG: LC705_02184 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 214 1 214 214 369 100.0 1e-101 MRDLVKLVGLDLAVFHTNSKKYFWFGTLISIVLLLLPFLNGDLATPLAGGITGLSIGLLM MPFVGVDRQGMENLYTMLPVRRTTIVAGHYLFGLMTVGLIDACSMLIIGLGWMARVNPIR DSQAFGWMLCFGTALMLFQIILSFPLMIGLGFKRAPLAAYFPLAILLIAVFLERSFQVDL DALKPWFGVIVAIFISAFIFSWWLSTVLYKKREF >gi|225002482|gb|ACIZ01000097.1| GENE 21 23862 - 24728 680 288 aa, chain - ## HITS:1 COG:CAP0090 KEGG:ns NR:ns ## COG: CAP0090 COG1131 # Protein_GI_number: 15004794 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Clostridium acetobutylicum # 1 282 1 281 282 194 38.0 1e-49 MTTDLLTVSHLNKHYEDFHLADVSFHLPAGYIMGFIGPNGAGKTTTIKAILDMLQPDSGD ISLLGQTTVAARKQVRDQLGVVLDGMVYPDSWQSTAVNRFVGPFFPSWDAVYFKQLCHDF AIPEKTKYRDLSMGTKIKLQLAAALAHHPQLLILDEPTSGLDPIARDELIAILQDFISDD QHSVLISTHSIIELAKVADYVTYLLTGKVTFTGPLSDLLDRYIMIKGGPNELTPGIQATI IGLQQSRVGFSGIWPADQADQLPDSIVQETVDLETLMIAFGKGRRAHA >gi|225002482|gb|ACIZ01000097.1| GENE 22 24718 - 25113 426 131 aa, chain - ## HITS:1 COG:BH0651 KEGG:ns NR:ns ## COG: BH0651 COG1725 # Protein_GI_number: 15613214 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 104 1 104 123 102 52.0 3e-22 MRIVISNQSGKPIYEQIEDQVKTAILAGQLKANEQLPSIRSLAKDLRISVITTTRAYHEL EAAGFITNVQGKGAYVLGQDSSLVRENALRDIEASLNQAIDTAKMAKITPAELHTMLDTL LQAEGEADHDN >gi|225002482|gb|ACIZ01000097.1| GENE 23 25132 - 26403 1059 423 aa, chain - ## HITS:1 COG:L16848 KEGG:ns NR:ns ## COG: L16848 COG1668 # Protein_GI_number: 15673756 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Lactococcus lactis # 6 417 7 411 453 164 29.0 4e-40 MEKMDVIFRQVFIKNLKSKTWLWIVLGPLVLAAIFGAVFWLMNQTNQTTRIGVVSDSPAL VQTFKSSSDNDQHYTHYATTAAAKRALAAEKLDAVLTVTGQPTQQASLIQRTDGQSINRT QLQGVLAQAHTKKVASQLQLSTTQLQQLFATPALATTSVKVDDGKLVTRSAKSQASGSVA GFIVDILIYTFVIGYASMMAQEIGTEKGSRIEESILTAITPQAQFFGKLLGILALMATQI IIYGVVGLASLVALRQLPQNPLSTLIGHLDLSSVSPNMILFSIAFFFVGTLTYTVLAALT GSLVANQEQIGQATTPIVMLGMVGYFGAIIVANGASPILNIASYVPFLSTMMMPVRLGAG QVSAAAGWSAFGINVIFLIAFTWLTVKLYQTNVLSYSDGGIFKAFKRSLQLQRTARKRHP VKS >gi|225002482|gb|ACIZ01000097.1| GENE 24 26406 - 27293 809 295 aa, chain - ## HITS:1 COG:L18206 KEGG:ns NR:ns ## COG: L18206 COG4152 # Protein_GI_number: 15673757 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Lactococcus lactis # 2 292 3 293 310 322 51.0 5e-88 MLNVTNLTKRFGNTTAVHDVSFAVRPGEILGLIGQNGAGKTTTFRMLLNLLQPDQGTVTW NQQPLAKLSRETIGYLPEERGLYPKMTIADQICFFAELHGMKRPAVMAVLDQWLDQFQVK GKPTDLVKDLSKGNQQKVQLIAAMIHTPQFIILDEPFSGLDPVNAHLLEVGIRRLRDQGS AIIYSSHDMRNVEAISDRLVMLKNGAVVLSGKLDEIREQFGQTRLYVQSPLTQQELQAFP GVITVTPRSRGFLVKLTDPQVGHDIFAAATHQGYIPEFSQQAPSLDEIFRMKVEA >gi|225002482|gb|ACIZ01000097.1| GENE 25 27571 - 28776 856 401 aa, chain - ## HITS:1 COG:L73818 KEGG:ns NR:ns ## COG: L73818 COG0282 # Protein_GI_number: 15673995 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Lactococcus lactis # 1 395 1 395 395 381 49.0 1e-105 MVKILSINAGSSSLKWKLFDMPSERQVAEGATDILRQSTVKIKYGTDQVYESTTPIRNYR EAVSNLLSHLQSLGLVNRLDEITGIGHRVVAGGELFSAPIVIDNRVLAQIRALRDYAPLH NPVEADCIDIFRKMMPWALEVAVFDTAFHQTMKPVNYLYSIPYEYYQKYGVRKYGAHGTS VRYVSAHAAKMLGKPLESMRMIVMHLGAGSSITAIQNGKSVDTSMGFTPVSGVTMGTRAG DVDVSLIAYLMKKLDITDVDQMIDILNTESGLRGISGISHDVRDLEAAAPTHPRAKLALD IFVNRIIKYIGAYAALMNGVDVLVFTAGIGEHSSNIRARIMQSLGYLGARIDPERNLQIH DNAGDITAADARVKTLVIPTNEELMIVRDVMSLSQVAQQAE >gi|225002482|gb|ACIZ01000097.1| GENE 26 28998 - 29966 804 322 aa, chain - ## HITS:1 COG:lin2790 KEGG:ns NR:ns ## COG: lin2790 COG0142 # Protein_GI_number: 16801851 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Listeria innocua # 2 320 3 324 326 229 38.0 4e-60 MIHPLWHRFPMVYHQLEQIQQRLEQVATLREPQVHTLIQQQINAGGKMLRSGLMLMLARF GEPDNAELVTAGAAIEALHLATLVHDDVLDHADIRRGMTTVSAESGNREAIYAGDFLFAI YFQLLSEQDPETVDLRTNARIMKRIFMGEVDQNGPSAPLIPTVNAYLSAISGKTAALFAL ATYTGATIGHLSATQKKAAYRFGRQLGMAFQMIDDLLDYTQTAKTLNKPALEDLNNGIVT LPLIYAYQTVPDQLTPLTKTAEQIAANADEIAAIVRKHGLPQAHQLAFTYTHRAIAALNP LPSSPTKAALTKLTQQLLQRTH >gi|225002482|gb|ACIZ01000097.1| GENE 27 29958 - 30956 641 332 aa, chain + ## HITS:1 COG:L187450 KEGG:ns NR:ns ## COG: L187450 COG1575 # Protein_GI_number: 15672164 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 29 324 1 294 301 204 40.0 1e-52 MNHAFSLFPKDIFTLLYLILKSQLLEVVMSISVFLELVEVKAKTASVFPFLLGTLFAWYH YHTLHIPELLVFFVAMLLFNMAVDANDNYQDYRRSEKTEALHFREKTNIIGVNHLNPSMI GWMVVAMMVTSAVLGLWMVSRTGWPLLVMGLFSFAVGYGYAGGPRPISATPYGEFFSGFT MGFVIFLIAVYVNVFNVVDFSWSLIASVYLASGLAQCAISALLLANNIADQDEDETLKRR TIVHYLGRQRSIVFFYSLYTAGFLMLIVSVLLGLLPKLTLLTLITVPLVVKNARGFAANP VKKLTFPNAIKNLFVTTLAQVVFLALGVWLNF >gi|225002482|gb|ACIZ01000097.1| GENE 28 30993 - 32057 716 354 aa, chain + ## HITS:1 COG:no KEGG:LGG_02180 NR:ns ## KEGG: LGG_02180 # Name: not_defined # Def: metallophosphoesterase # Organism: L.rhamnosus # Pathway: not_defined # 1 354 1 354 354 707 98.0 0 MTIRPFVKKDLGHFIDAVTPLLSPSALNFALITDTHDKAKFSSTYYGPTGFWHVREQQWL STRMPLDLRVHLGDLVDGSELPWLTKMRLRNIMVDYRRGAVPFLVTKGNHDDNDKFAEKR PGHKGSFLPDVNRQLIFATDAAQPDIAVSHEGLLVRDYPGLRVIVLNTADVPLHAGHKIY DVKKTLAVSFAQLRDFALALKGALNRDVLIMSHAPAMNQKGQPALRFNGRAVHELLRAFN LHASGVLNTGKTPEFGGQLRFDFTQNTGRIIAYLAGHYHLEADYQVNGIHYSLQNTSALM GRHHGLTTKFNRRFDRHFGTPSEYAGYVVSVDIDRRRLSLYGYGAASRVRRFAF >gi|225002482|gb|ACIZ01000097.1| GENE 29 33077 - 34981 1883 634 aa, chain + ## HITS:1 COG:L0095 KEGG:ns NR:ns ## COG: L0095 COG0367 # Protein_GI_number: 15674210 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 618 1 616 625 785 61.0 0 MCGIIAFADKTILNKKPVINNMMDMIKHRGPNSSGEYINDDVALGFRRLSIIDLKGGSQP ILNEDGTVAIIFNGEIYNFQSIRKDLIAAGHVFKTHSDTEVLLHGYEEYGIEELLKKIRG MFAFLIWDDNKKEMFGARDFFGIKPMYYYHDGDTFIVGSEIKAFLKHPKFKKQLNKEALK PYLTFQYSALDETFFKGVYRIPEGHYFTLKDNELTIKKYWDMDFKANNLSFEDTVAAIDK SVSESVDAHRISDVEVGSLLSSGVDSSYITALLRPEHTFSIGFDNKKYHEGVAAKELSDK LGLDNTSDIVTEKEALDNFPLIQYHLDEPDSNPSCVPLYFLTRLAHKDVTVILSGEGADE LFAGYANYGFHTRSHAIRVFADGLRKLPRGVKYRIAHGLKKMPNFHGRLHLYESTAPAEE FFIGEALVFHEGQADEILQPEFRQSKSVRDIVTESYKKVRHYDDEVKKMQYLDIHQFMPK DILLKADKLSMANSMELRVPFLDKEVAKVAAGIPTKYLINSHNSKYALREAANRHLPEEW ASREKLGFPVPVKQWLEDEPFYKKVRETFEQDWVKEFFDQDAILDILDKTYRKERNDRRK VWTIYTFLVWYKVYFIDDEIPHYVADSNKEKLEA >gi|225002482|gb|ACIZ01000097.1| GENE 30 35094 - 36038 690 314 aa, chain - ## HITS:1 COG:SPy1272 KEGG:ns NR:ns ## COG: SPy1272 COG0053 # Protein_GI_number: 15675227 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Streptococcus pyogenes M1 GAS # 22 308 9 290 411 138 32.0 1e-32 MLKSNNSLSISALIEQHGHEKIRQARRMLVVNLIVYTVIAAIELWFGAKDHAVALTADGQ NNLTGIVTVSALIVGLSFATRPSDTFHLEGHWQFENLAVFLAGLGMFLIGLITIWEGLGA TLALLSGHAAAPLKGQAAIMAAISAVSMLILCWFNHLIGQHTQSSSLAASAKDFLGDALT STGTMIAILGASYWHIHWIDPLAAVLIGLFLIWNGSRILSTSAEKLSNGFNPALRTQLVD KLQTVSGILAVSFVDGRYAGSNIIVEAEIVLPAGDSLAKSYRICKSAEQVLQSDFPVLYC CIQVKPNLPKNMSR Prediction of potential genes in microbial genomes Time: Wed May 25 20:12:26 2011 Seq name: gi|225002481|gb|ACIZ01000098.1| Lactobacillus rhamnosus LMS2-1 contig00106, whole genome shotgun sequence Length of sequence - 96053 bp Number of predicted genes - 84, with homology - 83 Number of transcription units - 41, operones - 20 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 144 - 1598 948 ## COG1511 Predicted membrane protein - Prom 1659 - 1718 3.8 + Prom 1773 - 1832 4.2 2 2 Tu 1 . + CDS 1857 - 2468 527 ## COG1309 Transcriptional regulator + Term 2582 - 2642 1.2 - Term 2472 - 2503 1.5 3 3 Op 1 . - CDS 2528 - 3316 526 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 4 3 Op 2 . - CDS 3337 - 4041 662 ## COG2013 Uncharacterized conserved protein - Prom 4063 - 4122 3.4 5 4 Op 1 1/0.500 + CDS 4499 - 5662 1114 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 6 4 Op 2 2/0.375 + CDS 5711 - 6703 908 ## COG1052 Lactate dehydrogenase and related dehydrogenases 7 4 Op 3 . + CDS 6717 - 7760 1059 ## COG3641 Predicted membrane protein, putative toxin regulator + Prom 7898 - 7957 2.7 8 5 Op 1 . + CDS 7989 - 8402 342 ## LC705_02165 hypothetical protein 9 5 Op 2 . + CDS 8386 - 9918 1769 ## COG2268 Uncharacterized protein conserved in bacteria + Term 9952 - 10019 19.5 - Term 9945 - 10000 16.2 10 6 Op 1 . - CDS 10044 - 11390 1186 ## COG0527 Aspartokinases 11 6 Op 2 . - CDS 11387 - 12586 1170 ## COG0460 Homoserine dehydrogenase - Prom 12606 - 12665 6.4 + Prom 12560 - 12619 7.1 12 7 Op 1 19/0.000 + CDS 12694 - 14208 1231 ## COG0498 Threonine synthase 13 7 Op 2 . + CDS 14174 - 15052 609 ## COG0083 Homoserine kinase + Term 15067 - 15100 1.3 + Prom 15111 - 15170 4.0 14 8 Op 1 . + CDS 15334 - 16593 826 ## COG3919 Predicted ATP-grasp enzyme 15 8 Op 2 . + CDS 16642 - 17103 383 ## LC705_02158 universal stress protein, UspA family + Term 17128 - 17172 8.0 16 9 Tu 1 . + CDS 17437 - 18168 490 ## COG1489 DNA-binding protein, stimulates sugar fermentation + Term 18173 - 18209 -0.7 + Prom 18245 - 18304 5.3 17 10 Op 1 16/0.000 + CDS 18521 - 19744 1268 ## COG4175 ABC-type proline/glycine betaine transport system, ATPase component 18 10 Op 2 14/0.000 + CDS 19737 - 20588 827 ## COG4176 ABC-type proline/glycine betaine transport system, permease component 19 10 Op 3 . + CDS 20600 - 21502 931 ## COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components + Term 21515 - 21571 12.4 + Prom 21604 - 21663 3.3 20 11 Tu 1 . + CDS 21688 - 23448 1727 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 23471 - 23517 11.0 - Term 23455 - 23510 13.3 21 12 Tu 1 . - CDS 23540 - 23950 480 ## COG2246 Predicted membrane protein - Prom 24009 - 24068 6.5 + Prom 24140 - 24199 4.4 22 13 Tu 1 . + CDS 24249 - 24950 666 ## COG3764 Sortase (surface protein transpeptidase) + Term 24954 - 24997 0.0 + Prom 24955 - 25014 7.2 23 14 Op 1 . + CDS 25041 - 26117 1144 ## COG0628 Predicted permease 24 14 Op 2 . + CDS 26107 - 27204 867 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 27224 - 27275 12.2 - Term 27212 - 27262 8.2 25 15 Op 1 . - CDS 27368 - 28414 860 ## LC705_02147 membrane protein - Prom 28438 - 28497 3.0 - Term 28448 - 28508 -1.0 26 15 Op 2 . - CDS 28518 - 28748 188 ## LGG_02139 hypothetical protein - Prom 28961 - 29020 3.5 27 16 Tu 1 . + CDS 28994 - 29683 678 ## COG0588 Phosphoglycerate mutase 1 + Term 29715 - 29775 14.4 28 17 Op 1 . + CDS 30067 - 30387 238 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 29 17 Op 2 . + CDS 30425 - 30586 123 ## LC705_02143 hypothetical protein + Prom 30592 - 30651 2.3 30 17 Op 3 . + CDS 30671 - 31255 505 ## COG1846 Transcriptional regulators + Term 31345 - 31379 4.4 + Prom 31448 - 31507 4.2 31 18 Tu 1 . + CDS 31540 - 32655 702 ## LC705_02140 membrane protein + Prom 32675 - 32734 2.7 32 19 Tu 1 . + CDS 32816 - 33817 501 ## COG0627 Predicted esterase + Prom 33840 - 33899 2.5 33 20 Tu 1 . + CDS 33922 - 34677 486 ## LC705_02137 hypothetical protein + Term 34695 - 34742 4.1 + Prom 34712 - 34771 3.2 34 21 Tu 1 . + CDS 34847 - 35260 427 ## LGG_02129 MarR family transcriptional regulator + Prom 35333 - 35392 4.9 35 22 Tu 1 . + CDS 35476 - 35667 170 ## LGG_02128 hypothetical protein + Term 35687 - 35719 4.0 + Prom 35928 - 35987 3.8 36 23 Op 1 . + CDS 36046 - 36732 441 ## COG2200 FOG: EAL domain 37 23 Op 2 . + CDS 36776 - 38149 1141 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 38 23 Op 3 . + CDS 38155 - 39348 675 ## COG2199 FOG: GGDEF domain + Term 39408 - 39455 0.8 + Prom 39389 - 39448 6.7 39 24 Op 1 . + CDS 39567 - 40706 570 ## LC705_02129 hypothetical protein 40 24 Op 2 . + CDS 40703 - 42193 646 ## LC705_02128 hypothetical protein 41 24 Op 3 . + CDS 42190 - 43749 826 ## LC705_02127 hypothetical protein 42 24 Op 4 . + CDS 43797 - 45050 1060 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 43 24 Op 5 . + CDS 45064 - 47124 1265 ## LC705_02124 hypothetical protein 44 24 Op 6 . + CDS 47105 - 47962 755 ## COG2199 FOG: GGDEF domain + Term 48020 - 48068 10.1 + Prom 48173 - 48232 4.0 45 25 Op 1 . + CDS 48406 - 48948 278 ## COG1846 Transcriptional regulators 46 25 Op 2 . + CDS 48935 - 49300 438 ## LC705_02121 rhodanese-related sulfurtransferases + Term 49366 - 49415 9.5 + Prom 49541 - 49600 5.0 47 26 Op 1 . + CDS 49626 - 50822 921 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family 48 26 Op 2 . + CDS 50869 - 51852 665 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 51889 - 51924 4.1 49 27 Op 1 . + CDS 52533 - 52970 479 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 50 27 Op 2 4/0.250 + CDS 53041 - 53490 407 ## COG1846 Transcriptional regulators 51 27 Op 3 . + CDS 53506 - 54465 599 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 52 27 Op 4 . + CDS 54533 - 54772 396 ## LGG_02119 acyl carrier protein 53 27 Op 5 3/0.250 + CDS 54795 - 55775 1044 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase 54 27 Op 6 26/0.000 + CDS 55805 - 56728 755 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 55 27 Op 7 11/0.000 + CDS 56725 - 57453 266 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 56 27 Op 8 4/0.250 + CDS 57476 - 58696 1121 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 57 27 Op 9 4/0.250 + CDS 58702 - 59148 437 ## COG0511 Biotin carboxyl carrier protein 58 27 Op 10 4/0.250 + CDS 59198 - 59638 531 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 59 27 Op 11 4/0.250 + CDS 59676 - 61058 1079 ## COG0439 Biotin carboxylase 60 27 Op 12 . + CDS 61040 - 61855 638 ## COG0777 Acetyl-CoA carboxylase beta subunit + Term 61902 - 61930 -0.2 - Term 61735 - 61801 4.4 61 28 Tu 1 . - CDS 61835 - 62089 64 ## LC705_02106 hypothetical protein + Prom 61989 - 62048 1.7 62 29 Tu 1 . + CDS 62139 - 62912 756 ## COG0825 Acetyl-CoA carboxylase alpha subunit + Term 62927 - 62961 0.2 + Prom 62926 - 62985 5.8 63 30 Op 1 . + CDS 63011 - 64192 1126 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases + Term 64233 - 64271 2.0 + Prom 64194 - 64253 2.6 64 30 Op 2 . + CDS 64281 - 65150 753 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Prom 65533 - 65592 5.6 65 31 Tu 1 . + CDS 65620 - 67098 947 ## COG1621 Beta-fructosidases (levanase/invertase) + Term 67201 - 67254 11.2 + Prom 67295 - 67354 5.4 66 32 Op 1 3/0.250 + CDS 67390 - 68391 986 ## COG1609 Transcriptional regulators 67 32 Op 2 9/0.000 + CDS 68448 - 70112 1235 ## COG0366 Glycosidases 68 32 Op 3 . + CDS 70114 - 72078 1796 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 72094 - 72154 18.3 + Prom 72225 - 72284 4.8 69 33 Tu 1 . + CDS 72313 - 75045 2226 ## COG1511 Predicted membrane protein + Term 75085 - 75135 13.6 - Term 75349 - 75395 2.5 70 34 Tu 1 . - CDS 75410 - 76594 1059 ## LC705_02093 transcriptional regulator - Prom 76768 - 76827 4.2 71 35 Op 1 . + CDS 76718 - 76861 58 ## 72 35 Op 2 4/0.250 + CDS 76951 - 80040 2159 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 73 35 Op 3 27/0.000 + CDS 80056 - 81705 1033 ## COG0286 Type I restriction-modification system methyltransferase subunit 74 35 Op 4 2/0.375 + CDS 82412 - 82921 26 ## COG0732 Restriction endonuclease S subunits + Prom 82925 - 82984 3.4 75 35 Op 5 . + CDS 83009 - 83935 427 ## COG0582 Integrase + Term 83946 - 83989 2.5 - Term 83932 - 83978 12.5 76 36 Tu 1 . - CDS 83983 - 85143 193 ## COG0732 Restriction endonuclease S subunits - Prom 85357 - 85416 2.3 + Prom 85185 - 85244 5.1 77 37 Tu 1 . + CDS 85290 - 86096 540 ## LC705_02087 hypothetical protein + Term 86209 - 86261 11.1 + Prom 86395 - 86454 10.9 78 38 Op 1 . + CDS 86540 - 87790 1108 ## COG1457 Purine-cytosine permease and related proteins 79 38 Op 2 5/0.250 + CDS 87907 - 88995 1003 ## COG3535 Uncharacterized conserved protein 80 38 Op 3 . + CDS 89066 - 90622 1487 ## COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit + Term 90656 - 90703 4.0 + Prom 90749 - 90808 5.1 81 39 Op 1 . + CDS 90840 - 92519 938 ## COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase 82 39 Op 2 . + CDS 92538 - 93521 645 ## LC705_02082 N-acetylmuramoyl-L-alanine amidase + Term 93579 - 93630 9.2 + Prom 93971 - 94030 4.0 83 40 Tu 1 . + CDS 94101 - 94913 478 ## COG0524 Sugar kinases, ribokinase family + Term 94937 - 94969 2.2 84 41 Tu 1 . - CDS 95392 - 96009 480 ## LGG_02085 hypothetical protein Predicted protein(s) >gi|225002481|gb|ACIZ01000098.1| GENE 1 144 - 1598 948 484 aa, chain - ## HITS:1 COG:L103741 KEGG:ns NR:ns ## COG: L103741 COG1511 # Protein_GI_number: 15672864 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 291 10 307 799 177 32.0 3e-44 MQHKMMVVVLVAIALIPAIYCFIYLSSMWDTYGKMDQLPVAIVDHDRPVTYHGKKIAIGQ QLTANLTKSTALDFHHVSASTATNRLHRGTYYMVLTIPRNFSKKATTLLTTTPETMPLYF RFNSGQNFIVSKMTTGAATAIKSKVASQVTKLYAGIVLTALHQADTGMTKAATGGQTLTT GAQQLTTGTAQLSTGLNRLATGLQQATKSQGQTNQAVASLNTGVTQLTTAATALAAGSQQ LQNGSQTLANQLTIGSQKLASIQTGANNAAALAAPVREVTSDVAKIPNNGTGMAPFAIAI GLYVGGIALGTMYEGFLPHRKPRYALSWWASKASVIGTVGLLQAGLLDISLLAGNHLHVS DHGLFFIAILLGSWLFLSLIFCLRLLLGGFGTWLVSIVLVLQLAGSGGLYPTYLVNGFAK AINEWLPMTYLIDALRSLIATHQAIGTDMAIMIGLIGLFNLLMLFRFQIGLHQSFIEIDA TEDA >gi|225002481|gb|ACIZ01000098.1| GENE 2 1857 - 2468 527 203 aa, chain + ## HITS:1 COG:SPy1258 KEGG:ns NR:ns ## COG: SPy1258 COG1309 # Protein_GI_number: 15675217 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 11 187 2 171 180 71 25.0 1e-12 MFMEVDAMASSTKMLETEMKIQQAFMTLMHQEGFGKLSVQQLAKLAGISRGTFYLHYFDK YDLLAHYEDEMIGHVKSIFAHFPKPLQAKRAANPLPERDAFFQLFKYLYRQRDLAVLLLN ENQTQLTAKVKQLVVELLRQGGSELVADDRDVPSDYAQEIVSQGVVDLIVYWLNQTPVRS PESVYSIFRTTRHLTPEQLTARI >gi|225002481|gb|ACIZ01000098.1| GENE 3 2528 - 3316 526 262 aa, chain - ## HITS:1 COG:CAC2936 KEGG:ns NR:ns ## COG: CAC2936 COG0596 # Protein_GI_number: 15896189 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Clostridium acetobutylicum # 7 247 10 253 275 119 32.0 6e-27 MPTKIGLHYNKIGVGKTIYFLHGMGLDGHSMAAFYEPRFTSEERHFARLYPDLPGMGNSP ATSALQSADDVLAQVHAFIQATSEGPCYLVGHSYGGYLALGLLARFPNEFSGAFLTAPVV LAEKTARTVAPLKHLISASVTSQSPDFTDYLHMNVVINPSTWRQYQELILLGLKTFNRDF WVAMKNRHAYRLSIESRLSSLIKSPVTLVLGENDNEVGYQDQVVFAHKGAHMTTTVIPNA GHNLMIDAPEAVMTAFHQFLHK >gi|225002481|gb|ACIZ01000098.1| GENE 4 3337 - 4041 662 234 aa, chain - ## HITS:1 COG:L178908 KEGG:ns NR:ns ## COG: L178908 COG2013 # Protein_GI_number: 15672568 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 231 1 230 232 252 57.0 5e-67 MNYTISANNTFPVVQIALQQDETIQIESGSMIYHNGLVELSGHMNSNGKRGLGGLMSAIG RSITSGESFFITTATGKAANAELAIAPGNPGVIKELTLDANHQYRLNTGAFLAMDTSVSY HMASQKVGGALFGGTGGFFIMETAGTGTMLVSAYGDIIPIELDGSHEYVVDNSHVVAWDS QLDYSIQPASGVIGFTTGEGLVNRFTGSGTVYIQTRNIEALANLIQPFIPSNDN >gi|225002481|gb|ACIZ01000098.1| GENE 5 4499 - 5662 1114 387 aa, chain + ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 384 1 386 389 388 51.0 1e-107 MALVDRMNHEVRQLKPSDILQFNAEISGIEGIVKLTLGEPDFPTPEHVKAAGIQSIENDE SHYTQSKGLPGLRAAASHYLATKYKTSYDPETQILITAGATGGIYSSLTAMLNKGDTVII PTPIFPLYIPIVLLNGAKPIFIDTSADGFILKPEKLQQAIEANRDTVKAVILNYPTNPTG VTYNRADLSALANVIKQYEIFVLSDEIYSELTYSGTHVSMGEILPDQAIVLNGVSKSHAM TGWRVGITAGPAAIIQQIGKVSEFTITSVTTNAQRAAEEALKNGMEDSQPMKQAYRKRRD FLMKALPEAGLEVPHPDGAFYIFAKLPDRFHDSWKFVYALAREAKVAVIPGASFGPGGEG YVRISYAASMADLKLAAERIKQFMATH >gi|225002481|gb|ACIZ01000098.1| GENE 6 5711 - 6703 908 330 aa, chain + ## HITS:1 COG:SA2346 KEGG:ns NR:ns ## COG: SA2346 COG1052 # Protein_GI_number: 15928138 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 330 1 332 332 207 36.0 2e-53 MKKILMYSVRPDEQPAIDDWVAANDIQVDTNTVAFNADTVDLAKGYDGVVIQQHGAIPEP LVYQKLKSFGMKQLTLRITGYDIVNLDAAAANGLAVTNVPAYSPRSVAELVLAHAMRLIR HLGEATAREAKDDYSWGGLEAQEVHQLTIGIIGAGKIGSTVARIFRALGSTVIVADPVTR PELADTVRYVDLDTLLATADIVTVHTPLDDITTHMLDAAAFKKMKKTAYLINAARGPIVD TAALIEALQRGEIAGAALDTIEGEAGIFGVDRSQSGVDNTNLETLKALPNVEISPHIGFY TDAAVKNMIDISLDDVKTILAGGHSPHQVN >gi|225002481|gb|ACIZ01000098.1| GENE 7 6717 - 7760 1059 347 aa, chain + ## HITS:1 COG:SA1676 KEGG:ns NR:ns ## COG: SA1676 COG3641 # Protein_GI_number: 15927433 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Staphylococcus aureus N315 # 4 332 8 336 353 161 34.0 2e-39 MKQDVKTVTMNILNGLSVGIIVALVPGAILNALVKLLLPSFPQLAVVTYMTTAAMTLLPA LSAVCVGMLAKFTPIQTSSLALAAIIGAGNYHLTTTGLSVAGTGDVINLAITLAIGYLVI LLLGNALKAYTILLIPSLVLLIAGGVGMLTLKPVSGITKYIGVVVHDITELQPIAMGVLM GIIFAILIVTPISTVGIATAIMLNGIGAGSANLGIVGASFALAAYGWKANPLGTSLAHFL GSPKMQMANILSKPKLFLPMALNAGILGGIGAALHIQGTPASAGFGFSGLVGPLAALDAM KAVTVGNVLELTIIFFILPIGLAYLSNLLFTKTLHYQVSEDYALHYD >gi|225002481|gb|ACIZ01000098.1| GENE 8 7989 - 8402 342 137 aa, chain + ## HITS:1 COG:no KEGG:LC705_02165 NR:ns ## KEGG: LC705_02165 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 137 1 137 137 216 100.0 1e-55 MLAWWAQQELWLQVIVGVVALLVIGGLLWMLLSLVLLPLLALLQRLLSPVENTTSMSDRD YLLGTLTLDVAHHHTGEVMVTGGGRARQTYPAKLWSDKSQPLDQGTKVVIIELKQGIAYV DALATHNPKEGTDGNFN >gi|225002481|gb|ACIZ01000098.1| GENE 9 8386 - 9918 1769 510 aa, chain + ## HITS:1 COG:BS_yuaG KEGG:ns NR:ns ## COG: BS_yuaG COG2268 # Protein_GI_number: 16080153 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 16 449 15 479 509 306 44.0 9e-83 MEILTDYMPWIIAAVLLILLFIFLATHRKTALPNEVLIISGALISGKHSFRDVNGNRVKL ITNGGSFILPILQRWDVLSLNTRTIEVATPEVYTQQGVPIIVNGTVILKIGSSQEEVATA AEQFLGKNDEQINSEATEILEGHLRAILGTLTVEDTYQNRDAFAEKVQDVASSDLAKMGL QIISFTIKDIADKNGYLDSLGKKQIAEVKKNAAVAEAAANRDTRIQQAQADQEAKQQEIE RQTQIADAEREQQVKMADFKKQQEIAQAQADQAAIVEQMKAKQVQKEKDIELAQKNAELQ EQELNATVRKQADADLYKAQRAAEAQKATQIAAAEASAKEVELDAEAKANATKAIGEAEA GKTKAIGLAQAEAIAKQAEAARQLDESGRFKMTIEAMPKIIEAAMSPYANVDSIKLYGDG DLTNQTSGSLVKQLDMLQEVAGIDIRGMLNGALMHQAGNQPVVDAIKHHEQPSAKAPDTK QPAPAPNSDQPATTEQAASSTPSRMAEKQK >gi|225002481|gb|ACIZ01000098.1| GENE 10 10044 - 11390 1186 448 aa, chain - ## HITS:1 COG:CAC0278 KEGG:ns NR:ns ## COG: CAC0278 COG0527 # Protein_GI_number: 15893570 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Clostridium acetobutylicum # 1 434 1 437 437 338 38.0 9e-93 MKVVKFGGSSVADAGQFQKVKAIINQDPQRQIVVISAAGKYGDATRKLTDTLYLIADGLE AGRDVTPLFAQVTARLEAINQALHLHVPLIKLMNTIRHHIATHYSRDYLVSRGEFLTAHL MAAYLGYTFVDAADLLFFDQNGAIDEAKTLAAYRRLPRHHGIVVPGFYGQNAAGHVQLMA RGGSDISGAWLARLAQADLYENWTDVSGIKMADPRIIQDADSIDVMSYDELRELTYMGFS VFQEEAVQPVRESGIPTRILNTNAPEDPGTLIIQDDDPANDMRIITGIAGRKHYLVVTIR QYQLALHLDIIQHALDVIADHHLVVDYLPTGIDSFSLLIREPRHQVSVHELTAAIKAACQ PDKLEVTENVALIAMVSRKLRQRPAIAGKVLAYLDDNLLNVQLVSQTNDDINLLIGVNDK DYDKAIRVIYSSIHQNFHRPAPYIEGIA >gi|225002481|gb|ACIZ01000098.1| GENE 11 11387 - 12586 1170 399 aa, chain - ## HITS:1 COG:BH3422 KEGG:ns NR:ns ## COG: BH3422 COG0460 # Protein_GI_number: 15615984 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Bacillus halodurans # 1 303 5 321 431 221 38.0 2e-57 MNIAILGFGTVGSGVYDIVENGDRRMRVTAIFIRPTHPATMPEMTTNFDAILADPTIDVV VEAIGGLHPAYDYILRALQHGKHVVTANKAVVAQHLPEFITTAAQHHVRFYFEATTGGGI PWIRNLERAARIDQIDTIEGIFNGTSNYILDQMQRAHLDFDPVLLAAKDMGYAEADPSAD IDGDDVVNKLKISAALAYDMVPPRDVPKFGIRNVTKADIDFFASRHQVLRLIGKSRRVGN HYSMVVEPRLYPATALAANTFENFNLIRLHGQTIGDLQFYGQGAGKYPTANAIVQDLFDI LENAPHLTRHFNQNLQFDADLNTADYLLRADPLTFAMFNDKDTEVVQDHLLIKQIPTGEM HRLMRGVLAIDAHAFMAAIGDSELTTRNVKEQVDQGVIE >gi|225002481|gb|ACIZ01000098.1| GENE 12 12694 - 14208 1231 504 aa, chain + ## HITS:1 COG:CAC0999 KEGG:ns NR:ns ## COG: CAC0999 COG0498 # Protein_GI_number: 15894286 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Clostridium acetobutylicum # 3 484 6 490 496 434 44.0 1e-121 MRYTSTRDQRVSKTGQQAIKQGISEEGGLFVLPHLTDYRLNLQNLLGKDYETIAQNVLTT LLPDFNTAALKKAIQFAYHKNFSDRRLTPVRSVGDFHVLELFHGPTSAFKDLGLQLLPQL MRLALDPEDRIMILAATSGDTGTAALQGFKNVAQTGITVFYPDHGVSPIQERQMLTTTGN NTRVFPIGGNFDQAQSAVKDLFTDTGFAARLQAEQVTLSAANSINIGRLIPQVVYYFSAY LQLVESGAIELGQKVNFTVPTGNFGDVLAGFYAKLLGLPIHQLIAAANANHELADFLETG IYDRNRPFLKTVAPSMDIQISSNLERLLYYKSGEDSRYVAKLMEELATTGRYQVRPDVLA AIQADFAGGFAADAQIAASIAAVWKQNGYLLDPHTAVGYHVMQQYRETTGDPTPNVLLAT ASPYKFPRAVAQALDLPVTGDDFAVMTQLQQMSGVPIPANLARLATLTAQPKHVVAPDKM GQAIIAAAKEVFNDDQRVRSGNKR >gi|225002481|gb|ACIZ01000098.1| GENE 13 14174 - 15052 609 292 aa, chain + ## HITS:1 COG:CAC1235 KEGG:ns NR:ns ## COG: CAC1235 COG0083 # Protein_GI_number: 15894518 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Clostridium acetobutylicum # 1 258 1 262 296 167 37.0 2e-41 MISVSVPATSANLGVGYDVLGLALDLKARFTFEASTQKLEIVGDDPDFANEQNLIYQAFA TFAKAVDQPVPNLRITVDSNIPSSRGLGSSATCVVGGIAAANEWFHAGWDRTQLLKLAAK MEGHPDNAAPAIFGQLCATILADTEPIVRQYPVSSQLQLVTFIPDYAVSTAEARKILPTT MTYADAAYQMGRCVLMTRALADGDLPLLHQVAHDRMQEPYRATLIPDYQAVRQLVTAANG VLLISGSGSTLLAIVEGATAARQLQAAASQQWPAWRVQVVQPSIEGVRVSES >gi|225002481|gb|ACIZ01000098.1| GENE 14 15334 - 16593 826 419 aa, chain + ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 1 412 1 406 408 427 51.0 1e-119 MKDTPSFTPILLGSDMNVYGMARSFHEMIGGAIDVYAREQLAPTRFSRIVNVHLIKQFDS DPTFIEKMREVAHLHAASAGRLLLIACGDTYAQLVSKHKDELSQWFICPYVDYDLLKRLN SKESFYQVCEEYHLPYPATKIVTKSMYESNATITAPFEFPVALKPTDSVEWLNIHFEGRK KAFTIHSQVELTNTIAKIYDNGYTSDLILQDFVPGDDSNMRTLNCYVDQYHHVKMMCLGH PLLEDPTPASIGNYVAIMPAFDHTLYDQIKEFLEAIKFTGFANFDMKYDHRDNTFKLFEI NIRQGRSSFFVTLNGYNLASWPVRDYITGDLKDAPTVYGNSDRSKYKLWLGVPERVFKQY SADNEAKREALKLIKEKRYGTTVFYKPDMTLKRWLLLKYMFHNYVGRFKQYFAENKGDV >gi|225002481|gb|ACIZ01000098.1| GENE 15 16642 - 17103 383 153 aa, chain + ## HITS:1 COG:no KEGG:LC705_02158 NR:ns ## KEGG: LC705_02158 # Name: usp # Def: universal stress protein, UspA family # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 153 1 153 153 268 100.0 5e-71 MVTENDLTIESVHYNRLLLAVDDDDDDSSRKALNYACTVAKIYDIPLGIVSVLETGDLNI FQSLTPDDVEAAREKMAKNLNTYVEKARAFGVQKAQPIIAEGRPAAALLDEVIPAFKPDL VIMGSHVRRGRLRLGHVASEVARDAAVSVIIVR >gi|225002481|gb|ACIZ01000098.1| GENE 16 17437 - 18168 490 243 aa, chain + ## HITS:1 COG:CAC0144 KEGG:ns NR:ns ## COG: CAC0144 COG1489 # Protein_GI_number: 15893439 # Func_class: R General function prediction only # Function: DNA-binding protein, stimulates sugar fermentation # Organism: Clostridium acetobutylicum # 1 227 1 226 230 150 36.0 3e-36 MQYQNVSVGQLIRRVSRFTVEIAIDGVTTSVHMNNTGRNKEILVPGSLASVRYVDHPNRK THYDLLAVKRQNRWINIDSLAPNHVARECLEAGTMKLPGLSLPYAVRPETTWRDSRLDFA GTAADGKKWFVETKGVTLANQTLAAFPDAPTTRALKHVHTLTMAQAEGYQAFLVFIVQLP NIQQMTIYRERFPELVTAITIAKQNGVRVLAYDTMTGPDFITLGQPILFDEHLPFTEMNL ASL >gi|225002481|gb|ACIZ01000098.1| GENE 17 18521 - 19744 1268 407 aa, chain + ## HITS:1 COG:lin1013 KEGG:ns NR:ns ## COG: lin1013 COG4175 # Protein_GI_number: 16800082 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, ATPase component # Organism: Listeria innocua # 11 406 2 396 397 491 63.0 1e-139 MQHKIENDAETKIEVSGLTKIFGKRINRAKEMLKQGKTKAEILKATGATVGVDQADFTIK KGEIFVIMGLSGSGKSTTLRMLNRLIEPTAGQVLIDGDDIAKLDKQHLREVRRQKLSMVF QGFALLPNRTVLQNAAFGLEIQGMDKSEREAKANKALDLVGLDGFADQFPDQLSGGMQQR VGLARALASDAEILLMDEAFSALDPLNRRDMQDELLDLQEEMHKTIVFISHDLNEALRIG DHIMIMKDGEIVQIGTPEEILSQPADDYVEKFIEGVDRSQVYTAANVMIRANTVNIDKDG PRLAARRMRDNEISSLYVVNTKRQLVGILDADDVRAAIDSGKKDLTTIVKTDVPTTKMDT PLADLLDAVSTTSVPYAVIDDQKRLCGIIIRGAVLGALSGQEVNVNV >gi|225002481|gb|ACIZ01000098.1| GENE 18 19737 - 20588 827 283 aa, chain + ## HITS:1 COG:lin1014 KEGG:ns NR:ns ## COG: lin1014 COG4176 # Protein_GI_number: 16800083 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, permease component # Organism: Listeria innocua # 8 281 4 277 282 342 74.0 5e-94 MFNLLVTIPTLPLAHWIDSFVDWLTQFAGFFGVLTNFIGTIVNAFQAIFDFIPIWLFIIL IMALTWYLKRGQKYRSLLIFELVGLLLIWNLGFWRDMTQTLTLVLTASLLAIVIGIPLGI WAAESKTVSAIVKPLMDFMQTMPAFVYLIPAVAFFGIGMVPGVVASVIFAMPPTVRMTQL GIEQVPADLNEAAVAFGATSWQQLIKVQLPFARGTIMAGINQSMMLALSMVVIASMIGAM GLGTKVYFAVGRNDAGGGFVAGLAIVILAIILDRITQSLNRTR >gi|225002481|gb|ACIZ01000098.1| GENE 19 20600 - 21502 931 300 aa, chain + ## HITS:1 COG:lin1015 KEGG:ns NR:ns ## COG: lin1015 COG2113 # Protein_GI_number: 16800084 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, periplasmic components # Organism: Listeria innocua # 5 300 3 297 300 381 66.0 1e-105 MTFYKKIIAALAMVATVGFLTACSSTQPKYDAKKPLGPQINYTITGIDAGAGIMSSTDKA LKAYGLEQKNWQLQPSSTAAMTSTLQKAIADKRPIVVTGWTPHWMFTKFPLKFLKDPKNV YGKAEQIHTIVRKGLKQDAPQAYQVLDQFHWTPKEISSVMLAVNNGQDPAAAAKAYVKKH PEQIAQWTKGVSHVSGSPKLTLTYIAWDSEIASTNVVATVLRQVGYKVTIRAMEPQPVWA SVATKAADAQVSAWLPNTAAKLYADYKNQVVDLGVNMDGARVGLAVPKYMKNINSIEDLK >gi|225002481|gb|ACIZ01000098.1| GENE 20 21688 - 23448 1727 586 aa, chain + ## HITS:1 COG:L0199 KEGG:ns NR:ns ## COG: L0199 COG0028 # Protein_GI_number: 15674026 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Lactococcus lactis # 5 578 4 565 567 503 45.0 1e-142 MAETIKAGVAALQTLESWGVTHIYGIPGGTFNNMMYALDEEKSRIKYIHVRHEEVGALAA VADGKLTGRIGVAFGSAGPGATHLFQGAYDAKMDKVPTLFLVGQVEQRFMNADFFQELDE DPMFQDAAVYARTVTTAQSLPHVIDEAIRRAYAAHGAAIVVIPNDLAAELIPANGYYSAA ATHATPILAAGTDEQVDQALRLIRTASRPVMYVGQGVRGAADTVMTLAKKLQMPVITTAL GKPIIPYAFEALLGSAARVASKPANEALRVADLIMFVGSNYPFAEVMFSPKAKFIQIEAD PKTLGKRHHTDVAILADAPATLKKMIARSDEAPSSGWYQANVDNVKNWHQYNDAMMQRTT GDMRFEPVFGQINRIATDDAIFAIDVGDVTQNAVRLLKVNGRQAWTTSGLFATMGAGLPA ALAGQLSFPQRQVFNLAGDGAAAMVMQDLDTEVRYHLPIINVVFSNNALGYIEDEQEDDG HEWFGVDMPAIDFATVAKGMGMTGLTVTKVSELAAAFDEAEANRIAGKPTLIDAKITNER PIPVEHLQLDPDRFDAATITAFKKRYYADNLVPFSSFLAAHHVSVG >gi|225002481|gb|ACIZ01000098.1| GENE 21 23540 - 23950 480 136 aa, chain - ## HITS:1 COG:lin2694 KEGG:ns NR:ns ## COG: lin2694 COG2246 # Protein_GI_number: 16801755 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 14 136 21 144 145 65 37.0 2e-11 MKTLIHLYKRYEMIINYLFIGGLTTLINFVTFFVMRYFDIGLVLTNTTANIVSVIFAFFA NKSVVFHSDYSSKKKFWFELTSFLILRGVSLLLDNFIMIVGVDWLHGNEILVKILDQIII VVANYLFSKLIFVRKR >gi|225002481|gb|ACIZ01000098.1| GENE 22 24249 - 24950 666 233 aa, chain + ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 6 216 44 258 287 150 40.0 2e-36 MTKSGKQQSPRKHRWLWRTIFALGVLLGLALVFNEPIKLFVVDHLSQWTMGQIDRNTVDK NEKRSATFDFKGVKALDINTVGNAALTRNLHPIGKIAITSVHLKLPILKGLSNDNLSAGA GTMKADQKMGEGNYALAGHYMTNQGILFSPLKNVQTGDTVAITNMKKVYTYKVTTKQIVN ETQVQWIDDVAGKKLITLVTCASPTEGEVDRIIVQGELQSVKKANQKNLKIFL >gi|225002481|gb|ACIZ01000098.1| GENE 23 25041 - 26117 1144 358 aa, chain + ## HITS:1 COG:lin0948 KEGG:ns NR:ns ## COG: lin0948 COG0628 # Protein_GI_number: 16800017 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 1 332 1 330 348 258 46.0 2e-68 MSAYEKFINNVPVRRTVVLFSVFLVLWFARSIMSDILLTFIFAFLVSRLVHAVQRHVHVR PFVIVVPVYILVILGLIYAAVHYVPAIIHQTITLFNSVQDFYNSDAFANNQVMQWVLQST KSLNLTEQLKTGLSTVLEYAGNIGAMGLTLVLSFILSFFFTIELDSLPAFGQLFLDSPFG WYFKDLRYFALKFINTFGVVMEAQIFIAVVNTVITTITLLFMKMPNIPSLAIMVFLLSLI PVAGAIISLIPLTIIGYTVGGWQDVITILIMIAAIHVLEAYVLNPKFMSSRTQLPVFFTF VVLLVAERLFGTWGLIVGIPIFTFFLDVLGVKKIAGTKAHHSTYDTVPQPKEHHENDA >gi|225002481|gb|ACIZ01000098.1| GENE 24 26107 - 27204 867 365 aa, chain + ## HITS:1 COG:SA0909 KEGG:ns NR:ns ## COG: SA0909 COG1680 # Protein_GI_number: 15926643 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 49 304 77 332 397 103 27.0 7e-22 MTRKRRWLIILAVLGVLVVVGGVTMRWIQHQRQVSKITARPVPQAQLRRHVRKLIDATDF RGSVALIKKGRIVYTGGVGEADHTRKLANNGTTMFPLASVEKYLTALVIGRLIADHRLSL TTKLAKFYPDIDHSRDITIRQLLDHRSGIQMDELTPEQILTSEKTALDWNLNQLGSTGDH SFIYTNANYALLAGIIRKVTKKPFAAALDQTILAPLKLTHTRNFDALSAKMPVAQGYLSE DDQSYQPDDLSQALLSSLLGSGSVYMSVTDLAKVIIAAETGKIIPKKVYRQLIAAHYADG NQYASGVAWLDDQRLLQGMYNDNPESFSTLAYFRANATSGVVLFGNHTMTTDTVTLAQNL EALVE >gi|225002481|gb|ACIZ01000098.1| GENE 25 27368 - 28414 860 348 aa, chain - ## HITS:1 COG:no KEGG:LC705_02147 NR:ns ## KEGG: LC705_02147 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 348 1 348 348 539 100.0 1e-152 MFKLCPNCGAHNAPTANFCTKCGANLAGVAATQPQAPATPDTTDGKADTVSATSQSPVAT APTADAKSGAAPETAKPISTHTTQADTAADSQAAQSSESSAAATQTAPTTDNTATDAPTS QAPQPTPQPNPTVEATKQYAGSYWRYLVDSIKHPASIERTYHSYFGLTSLAITIVSLALT IALRAGSAFSSLPGSLASSVMSTFLKLLVLVAILAIGVIAIYYLGVRGILGDRRRRFLDF TTDYAFHCNWMVFFSVFTLLMQILGLINVGSAMLISLLLTISLSLFFLAGPYMLFTAQST NHFDKIYALLIVSVLLAIVFMVITMFGLASIMGSLYQGLNDFGRSFNY >gi|225002481|gb|ACIZ01000098.1| GENE 26 28518 - 28748 188 76 aa, chain - ## HITS:1 COG:no KEGG:LGG_02139 NR:ns ## KEGG: LGG_02139 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 9 76 1 68 68 105 98.0 5e-22 MLSNLEVLVKKIWLTIGGIWLISVIYFLIYINLPAMQLAVNENGFLSLVHGIMDLILLGG TFALVAGGLYRLFHRR >gi|225002481|gb|ACIZ01000098.1| GENE 27 28994 - 29683 678 229 aa, chain + ## HITS:1 COG:lin2308 KEGG:ns NR:ns ## COG: lin2308 COG0588 # Protein_GI_number: 16801372 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Listeria innocua # 3 229 2 228 229 308 69.0 6e-84 MAKLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKHAGELIKQAGLEFDQAYTSVLTR AIKTLHYVLEESGQLWIPEMKTWRLNERHYGALQGLNKKETADKYGADQVHIWRRSYDVL PPLLKATDEGSAAKDRRYADLDPRIIPGGENLKVTLERVIPFWEDHIAPDLLDGKNVVIA AHGNSLRALTKYIENISDADIMNLEMATGEPVVYDFDEKLNVNSKTKLD >gi|225002481|gb|ACIZ01000098.1| GENE 28 30067 - 30387 238 106 aa, chain + ## HITS:1 COG:BH1893 KEGG:ns NR:ns ## COG: BH1893 COG0494 # Protein_GI_number: 15614456 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus halodurans # 1 83 72 155 172 62 38.0 2e-10 MMEYGETFVETLKREMKEDAGLLVEPIKPLHTFEQGFTTYPNGDQAQIICRLYLVKPVGG GLEQADPNETLALKYFDFDQLPPLFNMQSRDMIACVRAYLDGEQQH >gi|225002481|gb|ACIZ01000098.1| GENE 29 30425 - 30586 123 53 aa, chain + ## HITS:1 COG:no KEGG:LC705_02143 NR:ns ## KEGG: LC705_02143 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 53 1 53 53 77 100.0 1e-13 MIGAGFLLALGIGTAMKSITTLGWNLWSTVSGVVLRRALKTLDDFMLVLIDAN >gi|225002481|gb|ACIZ01000098.1| GENE 30 30671 - 31255 505 194 aa, chain + ## HITS:1 COG:L114370 KEGG:ns NR:ns ## COG: L114370 COG1846 # Protein_GI_number: 15672690 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 175 1 184 291 84 33.0 1e-16 MTQTSEALLKVFGQLLQKRPFMGAIASSLRFGDQQRQPNQLRLLRLLDQRGELTNSDLVE ALDIRPSSVSALVQKLEELGLINRHESETDKRVQLIALTDDGRKFIETTGKLKTDLPDQI FSGLTDDEQAELLKLIEKLTADLANRDDLSWPEGKQFDDMRAWAERFHHGHHGPRRGYPG SFGAGGPHGFDRHF >gi|225002481|gb|ACIZ01000098.1| GENE 31 31540 - 32655 702 371 aa, chain + ## HITS:1 COG:no KEGG:LC705_02140 NR:ns ## KEGG: LC705_02140 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 13 371 1 359 359 561 99.0 1e-158 MDLNNKNGRETDLAGKMRYCPNCGFKIPAGVKYCPNCGTDLVRFDAQIAAQTAAQSTQSR PTKQAEPQDSIADQEPTVGERSRRRQSQTPAGKKSLDLTDDSFQHFLDWLAVHIVYTLIG VMVLFCVFSFSVLIGWVLAVASAVAVYVVANRRPVARYQPRNRSDQSDDDDIWTMPSSGQ ASQVPPYSTPIRQPNFSPNSQSGGSSRWWLQFAGKSHRRGSLIWLVYLAAAFLALIAAYA WPFGASGVGTTTVGGSLYDLVRSASTLAETTAATTGTVGAAKVNLPYVALALAGVGPALG LVFGLFRARGMMRLGGMLGLLGYAALYVAYAPLMSSGTNQIQGLLNPGIGYVVGIVAALV MVVTARLLRRD >gi|225002481|gb|ACIZ01000098.1| GENE 32 32816 - 33817 501 333 aa, chain + ## HITS:1 COG:AGc3637 KEGG:ns NR:ns ## COG: AGc3637 COG0627 # Protein_GI_number: 15889292 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 75 243 20 193 322 97 35.0 3e-20 MQRRKRISGILITALMIAVVFLIWWVPSLAPSKSGQSSTSAPRQVTSASASKIVNRSTIS TSTSSESSVTSPQAASSLNESSFFSPTLNRSWRYFTYLPAGYTSSRQYPLILMLHGMDGD ATNLVKLVDSKTMLDQAVTATKHPAVVVFIDGGNSFYVDSPAEKMQTAIVQDLLPHLQQQ VAVLPQADAHAVGGVSMGGYGALHLALAVPTAFRTVAALSPAVWQQVPEAARPRMPAFLR AGQWNQAQWEADAPAKMLTGDRTVGLHVFLASGQADTTVPFQDVSRFADQLTTAGVNPTT HWSAAGAHGFTYWQQILPEAYQWMLRQLPVPEK >gi|225002481|gb|ACIZ01000098.1| GENE 33 33922 - 34677 486 251 aa, chain + ## HITS:1 COG:no KEGG:LC705_02137 NR:ns ## KEGG: LC705_02137 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 251 1 251 251 352 100.0 5e-96 MEFCPHCGVQVSADEAYCHNCGFNLKAYRLENQNAALAHQQENVGGQTSPASASGPQSGS VPPVTRRRQTSGGSPNHPKRPWLIVTLVLLAAVVIVGGVLYFQNRSQQTQEAASSSASAS AASASSVSIASASASESQAAASSSLAASQEAASESLANASESRAEKEETNSSSSDLSNRD VAKMAADLDDFDLDDYRVEVTSPAVNMKEVDVYDKDSGELYNKYRYDEIHDQMSKYDDDS GKWELIKDSDD >gi|225002481|gb|ACIZ01000098.1| GENE 34 34847 - 35260 427 137 aa, chain + ## HITS:1 COG:no KEGG:LGG_02129 NR:ns ## KEGG: LGG_02129 # Name: not_defined # Def: MarR family transcriptional regulator # Organism: L.rhamnosus # Pathway: not_defined # 1 137 1 137 137 234 99.0 9e-61 MQTETNISGLIYQLAKLQKYFLNQHLGTLNLNSDQAKVLTFVAAHPGTNQRQISVDLSRG PASVSNLIKRLIQQGLLEKRMAPHSDRERQLFLTADGQAAAAEVHELFQVLEKAFATNVK DPEALTATLERLLTALQ >gi|225002481|gb|ACIZ01000098.1| GENE 35 35476 - 35667 170 63 aa, chain + ## HITS:1 COG:no KEGG:LGG_02128 NR:ns ## KEGG: LGG_02128 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 63 1 63 63 111 100.0 8e-24 MIGATNEALFALLFPKDFPTLLVAKQARRMLCIRASHGNQEAARLLRVRSTPIRVVYAVK VSH >gi|225002481|gb|ACIZ01000098.1| GENE 36 36046 - 36732 441 228 aa, chain + ## HITS:1 COG:lin0158 KEGG:ns NR:ns ## COG: lin0158 COG2200 # Protein_GI_number: 16799235 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Listeria innocua # 2 216 3 229 232 64 24.0 2e-10 MYRYFIQPQLNKANQSLIGYELLMKQHTSRGWQPPVSFSALPAPVIADTLRQTAQKLVLK IGSVSVNLNRMQMLNHQIQTALIDVQNELRPVRLVVELTEEPEEAPIAWAQLEPMIQRFV ERGIEISLDDVATGENKLSHIRPLLPYASEMKFALQNDAKLTLSDARMQQRVRFWRDLAA EYHMRFILEGIESAADDRLVDALGIDLRQGYFYGKPQLLKLQASDPTN >gi|225002481|gb|ACIZ01000098.1| GENE 37 36776 - 38149 1141 457 aa, chain + ## HITS:1 COG:MYPU_0230 KEGG:ns NR:ns ## COG: MYPU_0230 COG0446 # Protein_GI_number: 15828494 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Mycoplasma pulmonis # 1 436 23 465 478 281 35.0 3e-75 MKIVLVGCTHAGVAAAMQILKEHPESDVVIYEREDNVSFLSCGIALYLAGTVKRLEDMFY ATPASLRKAGATVHIQHDVLKIDVHAKQLTIQNLLTNEVFKDTYDKLLVTTGSYVVVPPV YGVSEERVLMCKNYQQAQAIYATASQHAHIAIVGGGYIGVELAESYTNTGHQVTLLQGND QLLNHYIDPAMSKRVVRLLEAHGTKVLLNERVQAFHSGASTADPITIETAMNTYQVDLAI VCTGFMANTELLRGQIEMDRHGAIMTNDYLQTSDPDVYAAGDACTVKFNPTGEQVYIPLA TNAVRQGMIAGRNLFGNLQRYPGTQGTTAMPLFNHHLASTGLTLKNALEKGITAAAVTYE DTYRPKFMPTADRVMIRLVYARDTRRILGAQLLSRYDITQSANTVSVAIANRNTIDDLAF VDMFFQPNYDQPFHYLNLVAQQAIEQEATADQASNNR >gi|225002481|gb|ACIZ01000098.1| GENE 38 38155 - 39348 675 397 aa, chain + ## HITS:1 COG:lin2026 KEGG:ns NR:ns ## COG: lin2026 COG2199 # Protein_GI_number: 16801092 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Listeria innocua # 190 385 180 374 375 104 33.0 3e-22 MNVETLLPILASTLRDIFVILGVILIFQMIVLAYLKRHHLHGGKVIYTKGRLNQLGTVYF GVLLVFFQIELLTGKPTWIIVNERLMLFFYVMAYLGARSLVVTAGAGGLTQLVLIGFNTT IWQDLSVISIEAVVAYAFVVLGRRMQLSFMQASFALTVCVGLCWQVVVFLNAALLANGTG AMALVYAGDFLITNTVLSYVLDFFDRNNDDTTRIQYAASTDRLTQVENYASFERQLAKAF KDFRFQQTPVAMIAFDIDHFKQMNDTYGHLAGNEILAQVGRLLLDETRKTPDVQCFRVGG EEFNLLLRHQSFERAVAFANSLQARIHHYPFMVAGNVLHITVSMGLAQLKAADLNPDAFY DRTDQMLYYSKFQGRAKLTTEQDEALVNLSAEDSYSH >gi|225002481|gb|ACIZ01000098.1| GENE 39 39567 - 40706 570 379 aa, chain + ## HITS:1 COG:no KEGG:LC705_02129 NR:ns ## KEGG: LC705_02129 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 66 379 1 314 314 530 100.0 1e-149 MSVWGWQRLLAVLAAGLFLAGCQQVQPEKTTKQVAPVTRSVPIRAPKNKAFEAQYTALLR FLKKEMVQKDGVYTNYRNDQQTGTKASGHAYLSESSGLWLQHLALTRQNAAFSAFYHRTK RLFWQGHQFSYRYQPTTRTLYPVNAPVDDFRIMRSLLQMPQSKWQQTARGLYAKFQVTNL RANQLTDYVDASTGKRAKTLTLCYVDLATLKQLGSKAVYQKALLQVQNGHLSSAALPLFA TRLNLTDQSYTKSATINIVESLLTALHLSEVQALSDATWQWVRQQVRAGQLMNRYTATGQ AASEDQSAAAYALAALLAMQQHDQATAKNALQHALAFQMQTDSPLNGGLGDAASQTVYSF DNLMTLVALDTYCEGQVTS >gi|225002481|gb|ACIZ01000098.1| GENE 40 40703 - 42193 646 496 aa, chain + ## HITS:1 COG:no KEGG:LC705_02128 NR:ns ## KEGG: LC705_02128 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 496 1 496 496 921 100.0 0 MKRRLQAAGAVFSRHCSPALLAVILLIAVCGWYLFGPILHGYADNGEFARVLSHNQLLPR LGASHHGARYLDVTYSIRQFYNDTRLPAWSSQNLLIQVALWIDQLLISRTVFHLRVLGML AFGLYLGGVYLVVAGLTRQQRKGRHYLIAILAVWLLGDTSLTLYFNSFYSQSVMLIAVTY LFGSLLLLARKPAHAWRYLLIVASAGAILITADMQTAWLVGPVLLATVGLWWHRTRAFKW CLLLVSFALVLLSGLTIRQTPAELKAVSLYQSMTRGVLLNATDPGKTLASVGLEPQYALL AGTQFYQDKLPVNTRHRVVQREFVRQLRYSKVLRLYAGYPDQLVRMLQLASGDVYLTQMA AVGDFPVTTKGLPKQQSRYFTSCSLVMRAFFPKQFQFFLLLASILIGLYGYRVYQGGRRG IRAWIVCGWLVIGFEGLVVIAMLVAVILNGDADLARHLVLTAVSQNLVLLLGLSDFMTRH EDQAVDALASAKEVSP >gi|225002481|gb|ACIZ01000098.1| GENE 41 42190 - 43749 826 519 aa, chain + ## HITS:1 COG:no KEGG:LC705_02127 NR:ns ## KEGG: LC705_02127 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 519 1 519 519 975 99.0 0 MKRLFSCLLIIIGLVAGNHVCQEQPVAAATRPAVLLVYDSQHSETAQDQPVADMTRLLLG LGQSVTQVALSQYHAGELNRKYTAVMRMVNWQASPQNSAAFDHDWAQFTGKKIHIGARLP QDFIRTFGAGEQVTHLQLQLQDETTNVRQLLPFTATTWTLYPAVADAVGRLQVQGTSQTY GYGLMTEDKAYLPFFDQNGLTGLLAQRLLARFLTGQAQKLAPALLITGVTPTTSPKQLRQ VTTFLRQQGISFALSATLTAKHVRLPEHAAYLAALANSMQAGGQLIWQWPQLSQTIPADA KAVQRLYLAQVKQAIQNGLYPSGISGDIRTALTPKLQALYRQTNTQWLLPSMPTADASAH TVPQTANTTERAFWVMPLRRWQTIEGANDSGITSAAPLALQMALPTTAKALAQFKQDLRA YHGTWFDFSSDAFTNRLVAGNVTVTSQFGQYWRNGKPVTVASGDNPHQKRPQAKRISTRL NGFFNWQERFLLIFMLIMLVILAVLLRKGSKLYRDKFRR >gi|225002481|gb|ACIZ01000098.1| GENE 42 43797 - 45050 1060 417 aa, chain + ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 1 416 1 416 416 559 64.0 1e-159 MSALDWIMLFAIGAIWLILMVNVILVVAGYFEYMKMTQQPEPSLPPTPPMVSVMVPAHNE GVVIVKTVESLLRFDYPQDRYEIIVINDNSSDNSAALLRDLQHRYPDRQLHVINTDAVTG GKGKSNALNIGLTKAQGSVLAIYDADNTPEFGALRILVSELMADDGLGAVIGKFRTRNKQ ATWLTRFINIETLSFQWMAQAGRQHLFGLCTIPGTNYVIRRSLIDKIGGWDVKALAEDTE ISFHVYMNGARIKFQPKAVTWEQEPQTLDVWFHQRTRWVKGNIYVILKNSALLFQKRGRP IRFDLIYFLSIYFLIMTSLVLSDAVFILSTAGWAHVGLKGFSTGLWLLAILLFIVSTFIT ISTEKGEMTVGNVGIIGLMYITYSQLWLAVALYGMVAYIREQLFHQQAHWYKTKRYQ >gi|225002481|gb|ACIZ01000098.1| GENE 43 45064 - 47124 1265 686 aa, chain + ## HITS:1 COG:no KEGG:LC705_02124 NR:ns ## KEGG: LC705_02124 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 336 686 1 351 351 602 99.0 1e-170 MLAVLCFFFVKPLPVQAATQTFTEPFQNVATSQSGQGIRTDMYFVKMGYWQVETAKLNLN FQVSQLADRTLSDLTVAINGVKFASFRPDNTSGLQTHSIDVPVNLIQGSNQLTVQGQVLT TDQGTVEKTQTPANWLTVYPQSNLNFTYTLDEPEPAIKSFYQHFSGQDTIAKGQAGIAVP KAPSNSELAAATYALAGYARVLSNAEEAIAIAPSDSETLANRPYQMVVARYDHLPSAVKQ QIQTRDLNRGAVLQTVYTNGRYQLIVTAKTDTLLVKAARFVANQELMQETKATKKIITAK TQTFSSSLQDFGNHYALSPTDTTLTGSGHQQAVFFVKLPMDRTNADGSQIKLNLRYAKNL DFSRSLVTASVDDRPIGSWRLTQAGANGKTITLTVPKNMPLANAVTIRIAVDLALPGTTT TTNDQTPWATIGEASEFRVKSKPQTSQLFRNYPTMFLKQGAFDHVAVVRPAQMTNTDFKT LTNIVNLLGSFAKRNTGTITYYDQAPSEAVLAANNVIAFGSPKATRLVQTLNPKLYFRYN GNFTRLVANEKLSIESAYGKTLGTAQLLRSPYNAAKTMLVVTGATADATFLGSTQMVTQP QIKAYRGDLIAVDPDNQHYDYRFKKQAITSTGSSVTKQLLQKRTLVIFLTVAAVMLVLLL AALIFLLRKYGTRAQEKGITNEKQNR >gi|225002481|gb|ACIZ01000098.1| GENE 44 47105 - 47962 755 285 aa, chain + ## HITS:1 COG:lin0535 KEGG:ns NR:ns ## COG: lin0535 COG2199 # Protein_GI_number: 16799610 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Listeria innocua # 10 285 8 284 284 163 33.0 4e-40 MKSKTAELGLRTDLNLLAFLFLTAVTAVFMALTSDQVLLNTVYLGISIFLLLATYFWGLT AGLVLNLLFIFAQGTWMVYTDLLAGHPAPLALIFWLIMPVLFSVSFYGLVQKTLTLQHRN QELINRVQQFGSFDERTRLRTLVAYQQDGAVYMDTSRRYHLPVSTIALKLRYEGELRRLM TTAQFNELIQIVSQALTASTRTNDMVYLIDRTHPTWAVLLYTDRAGATIAAKRIRSQFAK SLAAQPGMPDVAVTLQLGIADMRDDGIKTPADLIHQAEKATEYDV >gi|225002481|gb|ACIZ01000098.1| GENE 45 48406 - 48948 278 180 aa, chain + ## HITS:1 COG:BS_yetL KEGG:ns NR:ns ## COG: BS_yetL COG1846 # Protein_GI_number: 16077789 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 19 161 17 159 167 72 30.0 3e-13 MNFDFTDRPDEHRLDLMRKVYPDVDTQSVLTFLNFRTCFRAVANDYQQVLDQFGLSESRF LILMFLYHQQPQALSITVLAEKLGATKATTSKLVRGMVASGLVEKTTTAADKRASLIRMT TEGATLLDRFLPVNYQTVNRLFANLTHDEQIQLNRLLDKLLLGTKYPIYPQKGAHHDGTS >gi|225002481|gb|ACIZ01000098.1| GENE 46 48935 - 49300 438 121 aa, chain + ## HITS:1 COG:no KEGG:LC705_02121 NR:ns ## KEGG: LC705_02121 # Name: not_defined # Def: rhodanese-related sulfurtransferases # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 121 1 121 121 232 100.0 3e-60 MEQAKIDFLRTYLSLYIDHFTVLHALQAGDQTYEVLDVRNAPTQAKKVQIKGARAMPAKD LVTKLDQLDQQKTYVVYDWTSGTTLGKQALLILLSHGFKAFELAGALEGWQGMNLPVEPA H >gi|225002481|gb|ACIZ01000098.1| GENE 47 49626 - 50822 921 398 aa, chain + ## HITS:1 COG:CAC3299 KEGG:ns NR:ns ## COG: CAC3299 COG1979 # Protein_GI_number: 15896543 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Clostridium acetobutylicum # 1 391 1 388 389 341 44.0 2e-93 MKNFRFQNATDIRFGTGRLDTELHDAVSRFGSRVLFVYGGHSIKKSGLYDTVKGLLADLD VTELAGIEPNPKIASIREGQQLAKQHDIDVVLAVGGGSVIDAAKVIASAKFYDGDPWDLV KDRGITRHKLQQVPVVDILTLAATGSEMNSGSVISNPATHEKLGTTGPNTPAISFLDPSL TYTVPVRQTAAGSMDILSHLIEQYFDRSKNNDASKGMMEGLMRTVIKWAPIAVKEPHNPD ARANLMWSATMALNGLVSVANENGWTVHSLEHELSAYYDITHGVGLGILTPRWMEFILTK DPTTAEMFARFGRHVWDLEGDETYAVAQAAIDATFDWIQHLGFPMTLPEVGIADEAHFDA MATAAVANASLETRAYVPLSEEDVKAIYQASMTNGLTA >gi|225002481|gb|ACIZ01000098.1| GENE 48 50869 - 51852 665 327 aa, chain + ## HITS:1 COG:ECs0404 KEGG:ns NR:ns ## COG: ECs0404 COG0596 # Protein_GI_number: 15829658 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli O157:H7 # 33 170 33 172 309 62 30.0 2e-09 MTQPILEHDSVAFQAARNAENQLWLDFHLKPKTRWLKIAPTESAEANLRVRVLEFGHGDP VLMIPGNTGDPYELAPLLPQLAGYHLFVLALPGSGLSDGFDYEQVKVHDFAVELIGQVMD QLDLKTVPIIAHSLAAHWATWFALPYPERVDQLILLGNPGRMLMTSTPAPLKPALNPVLS RWFMKRQIPKSAKRAWGPLHRMGTDPAAVSALPQSFADCVHAFTHLPHYQLTSLSLLRSM YRSKESNVLPERYLRQLTVPMSLIWGTNDPFANPELGQEIAAVVQHGELTTINGAGHEPW IDDPEKVGTIVRLKLKDSELRAAVSRH >gi|225002481|gb|ACIZ01000098.1| GENE 49 52533 - 52970 479 145 aa, chain + ## HITS:1 COG:L160425 KEGG:ns NR:ns ## COG: L160425 COG0764 # Protein_GI_number: 15672547 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Lactococcus lactis # 4 145 7 147 151 96 37.0 2e-20 MTTLDTSTIQTLIPNRYPLFYIDRVTELVPDESIVAEKYVSVAEDHLVAYLPGELTMPPT LIIETLAQAASILILKSPKFAGKTAYLASIGKTEFLKPVPTGSVLTLAVKMGKVRANMGV VTTTASIGEELVCHAELHFVVEANA >gi|225002481|gb|ACIZ01000098.1| GENE 50 53041 - 53490 407 149 aa, chain + ## HITS:1 COG:SP0416 KEGG:ns NR:ns ## COG: SP0416 COG1846 # Protein_GI_number: 15900335 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 8 148 4 144 144 123 44.0 1e-28 MSQKPSVKRINDKLIRVYSDILRMEEEELRKSQFRDLGIKEMHTIDAIGIHATPSSSDVA KKLHVTQGTLSVAINNLARKGYVERLHLESDKRVVNLRLSRKGRLMYRAHLAFHQKMVAS FVKGFTEPQIELIERALDNLNEFIDEYRH >gi|225002481|gb|ACIZ01000098.1| GENE 51 53506 - 54465 599 319 aa, chain + ## HITS:1 COG:SP0417 KEGG:ns NR:ns ## COG: SP0417 COG0332 # Protein_GI_number: 15900336 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Streptococcus pneumoniae TIGR4 # 7 318 10 323 324 282 46.0 7e-76 MEILASAYSVPATRIENEQLREFMDTSDEWIRERTGIQTRHVVTDQRNFDLAYDVAQQLL EKSTVTADQLDFIIVATMSPDYATPAEANRLQAALNANHAFAFNLNVACAGFEYALHVAD RLMTSPTVHQGLVIGSEVLSRLVDWHDRRTAVLFADGAGGVLVSDQGAPVQAVDLKSFGD TEMVLLAGEQANQSPFADAQAQPSPYFKMNGRAVYQFAISEVPRSINRALEQANLTTDDI DWFLLHQANARIVQSVNKKLKVAEAKFPINIDEYGNTSAASVPILLAQLAESGQLKRGQK IVLSGFGGGLSVGSLIMTY >gi|225002481|gb|ACIZ01000098.1| GENE 52 54533 - 54772 396 79 aa, chain + ## HITS:1 COG:no KEGG:LGG_02119 NR:ns ## KEGG: LGG_02119 # Name: acpP # Def: acyl carrier protein # Organism: L.rhamnosus # Pathway: not_defined # 1 79 1 79 79 91 100.0 9e-18 MTNEEVLPKVQSIIADQLDKKPEEVTLTTNFKNDLDADSLDIFEIINEIEDEFDVKIDTD ESIETVSDLVTFITEKAEA >gi|225002481|gb|ACIZ01000098.1| GENE 53 54795 - 55775 1044 326 aa, chain + ## HITS:1 COG:CAC3576 KEGG:ns NR:ns ## COG: CAC3576 COG2070 # Protein_GI_number: 15896810 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Clostridium acetobutylicum # 8 309 10 306 310 323 56.0 3e-88 MSPLMERLGVKYPLFQGGMAWVADGKLAASVSEAGGLGIIGSGHAPASWVKEQIEVAKSM TDKAFGVNVMLLSPFVEQVIDVIVDAKVALVTTGAGDPSRYLERLQQNGTVVMPVVPSVA MAKRMARDGVDGVIAEGMESGGHIGSITTMALVPQVVDAVDIPVVAAGGIGDGRGVAAAL SLGAVGVQMGTRFLTSTSSRIHQNYKDAVIKAKDVDTLVTGMYVGHAARVLKNPMSRNYL KLEKEIALSGTTDFTAVEELGNGSLRKAVLEGDRDHGSFMAGEIAGLVKREESSKDIVEE VMQQAKEIVAGSKMAALLTSQVDVQA >gi|225002481|gb|ACIZ01000098.1| GENE 54 55805 - 56728 755 307 aa, chain + ## HITS:1 COG:SPy1750 KEGG:ns NR:ns ## COG: SPy1750 COG0331 # Protein_GI_number: 15675599 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Streptococcus pyogenes M1 GAS # 4 299 5 305 312 182 37.0 9e-46 MQFAYVFNGQGAEVPGMGIDFYQNTLIFKEIIDRADAVLDFDLPEFLANGDFAAHPDYLQ PALVAYSVAMHEVASAELPPEAALAGLSLGEYSALIAGGGLSLESGLELVAARGKAMAAA CQEQPGGMLAVMSGDESIIKTACQQAEHVWPANYNGPKQTVLAGTHDDLATVEKWLTDQG VRAIPLQVAGGFHSPLMASAQPPLQAALAAAHVFEPVIPVISTTALKPFSASNIRPVLAA QVAEPTKFATVIAQLKAQGVDTIVELGPKPVLSKMIKRIDRKMTTYLIRDAASLNEVADL NNGVKAD >gi|225002481|gb|ACIZ01000098.1| GENE 55 56725 - 57453 266 242 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 6 239 4 238 242 107 33 3e-22 MKLTDKTAIITGASRGIGEAIARNFAQAGANLVLNARHEFPETLIKELEDYGHGVVTVLG SVDDPTTGDQLVAAALDQFGSVDVLVNNAGITDDMLAMRMKPDSFAKVVQVNLDGTFYVT QPAFKKMLKARAGVIINLASVVGLTGNIGQANYAASKAGIIGLTKTLAREGAMRGVRVNA IAPGMIATDMTAALSQSSQDQILAEIPLKRFGQPEEIAHTARFLVENAYITGQTVTVAGG LG >gi|225002481|gb|ACIZ01000098.1| GENE 56 57476 - 58696 1121 406 aa, chain + ## HITS:1 COG:SP0422 KEGG:ns NR:ns ## COG: SP0422 COG0304 # Protein_GI_number: 15900341 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 406 3 408 411 382 49.0 1e-106 MQRVVVTGMGTVNPLGHSVAETVATMDAGKVGIQPITKFDAEKTGITVAGEVKDFKPEER MSKRLSKRMDLFTQYGLYSAIEAYEQSGLTEDAVDSDRVGVIFGSGIGGLTTIQEQVTKM YVKGPDRVSPLFVPEAISNMVAGTISHYFGTHGPSYVVVTACASATNAIGEAAMRIQAGK ADVVITGGAEASVNEIGIAGFAALSALSKNTDPTKASLPFAADRNGFVLGEGGGALILES LEHAQKRGAKILGEVVGYGATSDAYHMTAPDPSGSQAARAMQLAVEEAGIKPSEVGYINA HGTATKANDAMESKAIHDLFGDDVLVSSTKALTGHLLGAAGAIEAIMTLSALQSGRLPMN VVDAAQDEDCPVTLVNRDNRDTSVDYALSNSFGFGGHNAVLAFKRW >gi|225002481|gb|ACIZ01000098.1| GENE 57 58702 - 59148 437 148 aa, chain + ## HITS:1 COG:ECs4127 KEGG:ns NR:ns ## COG: ECs4127 COG0511 # Protein_GI_number: 15833381 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Escherichia coli O157:H7 # 1 144 1 156 156 97 39.0 6e-21 MDTKMIEVLIKQLEQSSLHELELTLGNDSLHLVKASPAAASAPVTPAPENTAATPVTPVP DKPQADEGTAVKAPLVGIVYLAPKPGADPYFQVGDHVKKGDVVCIIESMKMMNEIKSTVS GTVKAVKVDNESLVEYDQPLLIVQEDKA >gi|225002481|gb|ACIZ01000098.1| GENE 58 59198 - 59638 531 146 aa, chain + ## HITS:1 COG:CAC3571 KEGG:ns NR:ns ## COG: CAC3571 COG0764 # Protein_GI_number: 15896805 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Clostridium acetobutylicum # 7 145 2 140 141 148 53.0 3e-36 MLETKKTLEAQEIQAILPHRYPMLMIDRVLDLKPGESVVAQKNVSINEQIFQGHFPGNPI FPGVLQIEAMAQAGAIALLSMPDFKGKTAYLGGIKKAKFRHMVRPGDVLRIEVTLEKLID NAGLGKGKVYVGEDMACSAELVFAIG >gi|225002481|gb|ACIZ01000098.1| GENE 59 59676 - 61058 1079 460 aa, chain + ## HITS:1 COG:SP0425 KEGG:ns NR:ns ## COG: SP0425 COG0439 # Protein_GI_number: 15900344 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Streptococcus pneumoniae TIGR4 # 1 450 1 454 455 480 55.0 1e-135 MFKKVLVANRGEIAVRIIQTLREMGITSVAVFSNADRHSLHVLLADEAICIGGPRATDSY LNMRNVVSAAILSGAEAVHPGFGFLSENAEFAKLVTDAGLAFIGPKPTAIEQMGDKAVAR QTMIDIGVPVIPGSRPLQDVDTALAAAQAIGYPLMLKASAGGGGKGIRKLATADDLTAEF AGAQAEAQAAFGDPTMYLEKVIVPAKHVEVQVLRDQQGHVSVFPERDCSLQRHSQKMIEE SPCPVLTSPERAKLLHLAETIADGVDYLNAGTIEFLMDQQHHFYFMEMNTRIQVEHPITE MVTGVDLVQAQLRIAAGEDVELTTPEPSGVAIECRLNAEDPDHQFMPDVGTLEQLRFPTG GLGLRVDTGVAPGDKISPYYDAMIAKIIVHGQTRQSALAKMHRALTELDVQGVKTNRDFA LALFQAPKVLAGEADTAYLNRDFLPQWQDERKDAACSNHN >gi|225002481|gb|ACIZ01000098.1| GENE 60 61040 - 61855 638 271 aa, chain + ## HITS:1 COG:SP0426 KEGG:ns NR:ns ## COG: SP0426 COG0777 # Protein_GI_number: 15900345 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 17 269 29 283 288 315 59.0 4e-86 MFQPQLTQEALAREAALPENLWIQCPYCKQGSYRESLGDAQVCPHCHYGFRITAKKRLAL VATDATEWDADLTTTDPLDFPGYEKKLAAGHQASGLKDSVWTGQAKIGGQVCGLGIMDPK FMMGSLGTVTGERITRLFEKATEANLPVVLYCASGGARMQEGIHSLMQMAKVSAAVKNHS NAGLLFISVLTDPTMGGVTASFAMQGDITLAEPHSLIGFAGRRVIEQTINQKLPQNFQRA ETVLQSGFIDAIVKRSEQADYIGELLQMHRA >gi|225002481|gb|ACIZ01000098.1| GENE 61 61835 - 62089 64 84 aa, chain - ## HITS:1 COG:no KEGG:LC705_02106 NR:ns ## KEGG: LC705_02106 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 84 18 101 101 158 100.0 6e-38 MLKCVHSYRNLRVWASSLNGQRPAGSGKSLLFRLGTFSDAETRSQAQKPAREDPEPKWPK TGHLGLRATYAPVSKRACSRSVHL >gi|225002481|gb|ACIZ01000098.1| GENE 62 62139 - 62912 756 257 aa, chain + ## HITS:1 COG:L0190 KEGG:ns NR:ns ## COG: L0190 COG0825 # Protein_GI_number: 15672762 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Lactococcus lactis # 12 257 21 260 260 244 51.0 9e-65 MPKKETSAYATVQAARAPRPYTTRELINGLVTNFHELHGDRSSHDDPAVIGGIGWLDDQA VTVIATDKGNDLTERLQTHFGSPEPWGYRKALRLMKQAAKFHRPIVTLINTPGAYPGKEA EANGQGAAIADLLVTCADLPTPILAILVGEGGSGGALALAFGDEVWMTDKSMYSILSPEG FAAILWKDSSRAKEAAEVMQLTPRDLLAKKVCDRIITDTGTDFPSALKAEVKPKLATLMA LDPQTLVTQRQARFRKF >gi|225002481|gb|ACIZ01000098.1| GENE 63 63011 - 64192 1126 393 aa, chain + ## HITS:1 COG:CAC0877 KEGG:ns NR:ns ## COG: CAC0877 COG2230 # Protein_GI_number: 15894164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Clostridium acetobutylicum # 4 393 5 391 391 364 46.0 1e-100 MLEKKFYHTMFSHSFNIPVRVEYWDHTEETYGTGEPTITIKMKKAIPVRLLLKNASLALG EAYMRGDIEVLGGKRPLQQLIAAAYANADSFMRNNKLMRVLPKQSHTERKSKQDIHSHYD LGNDFYKLWLDPTLTYSCAYFENWDDDLETAQLNKIDHILRKLNPQPGRTLLDIGCGWGT LMLRAAKTYHLHVVGITLSKEQFKLVSDRIEAEHLNDVAEILYMDYRELDREPFDYITSV GMFEHVGKENLEEYFKDVAKLLKDDGVALIHGITRQQGGAVNAWINKYIFPDGYVPGMAE NLTHIIDAGMQLDDLEPLRRHYQRTLEIWDTNFNNHRNPIQQKFGYEFTRMWDVYLQAAA ASFEAGNIDVMQYLISKGPSGKDLPATRDYMYE >gi|225002481|gb|ACIZ01000098.1| GENE 64 64281 - 65150 753 289 aa, chain + ## HITS:1 COG:AGc1732 KEGG:ns NR:ns ## COG: AGc1732 COG0702 # Protein_GI_number: 15888288 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 280 5 272 279 138 31.0 1e-32 MTNILVIGATGNIGLPLIQALTKRADVQLFAAVHSPAHARATLRDLPVQLRKFDFLDAAT FDPALAAIDKVFFVRPPQLAKPKTDMYPFLDALVRHGIKQVVFVSLLGVEHNPMTPHHKI EKRIEALGLPYTFIRPSFFMQNLNTTHRHDIVAHHDLFVPAGRARTSFIDTRDIGAVAAT VLCDPQYIGQKLAITGDQALTYAEVAKIMTAVLGVQITYSRPSLLRFRHTMIARGLPKNY VNVMVMLYLITQMGNAKEVTTTLPKVLGRPAITFSQYVHDYRRDFLPEK >gi|225002481|gb|ACIZ01000098.1| GENE 65 65620 - 67098 947 492 aa, chain + ## HITS:1 COG:SP1724 KEGG:ns NR:ns ## COG: SP1724 COG1621 # Protein_GI_number: 15901557 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 10 461 7 455 484 326 38.0 6e-89 MTDSIENMAKRYQPYSRWTPEYVASLKAEVAASQWRTKTHIQPDTGLINDPCSLNFFNGK WHLYYQQFPFGPVHGLKSWAHVVSKDLFNWRRVPGDLLPDNELDAQGAYTGSALVTHGTL RIMYTGNVRDEQWHRQSTQLGAVLGADSRLYKDPKPLIANPPAGYTQEFRDPFLFNYQDK TYVLIGGQRADHTGAILLYEKQPDKTWRFVAPLSIPDEFCGYMVECPNIAFINGKVVLVY CPQGLDQDFFEYENVYPNIALVADSFDPETGTLTHQRLQNIDKGFDFYATRLANTEKDGT LAISWLGLPDTNYPTDADGWEGVLSYVRQLDLRDGHVCLKPHPNIEQLRETAAEALPVVS HNTDQWSVKALSGAFELSMTLAAGQKATVHVPDGDHDQLLINLDSDSGQGMVQRENRNNG GSLRQFGFPAGKTVTIRLFVDVSVFELFIDGGYRVVSGRFFGDTCPTAARVNPPAAVSNV QAWNLRKDNGGL >gi|225002481|gb|ACIZ01000098.1| GENE 66 67390 - 68391 986 333 aa, chain + ## HITS:1 COG:BH1250 KEGG:ns NR:ns ## COG: BH1250 COG1609 # Protein_GI_number: 15613813 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 308 1 305 338 187 33.0 2e-47 MATISEIAAAAGVGVTTVSRYLNHHPYISADKKARIEAAIKTLGYTPSAAATSLRAQATG NIGVLVSRVTNPFFAGLFDAIERTLHAHGYQVMISQTYDDPDAEGRFLNQLKSRELDGVI LASVEAPARVAAVAKAFPGRVVVVNADVQIPNAKSLVLPHYQATRDALDYLFAQGHRHFA YMTGGAIKSARHGQSRTQAFFDFMQARGLPVEPAWLFEQVHSATEGQTLGRQIAALAPAK RPDAIFTNSDEVAVGVVDSLVAANIAVPDDMAVMGYDDQPFAPFARVPLTTVHQPVAEMA QVATDLLLAGLGRGEPAATLEPLTLTLKIRQSA >gi|225002481|gb|ACIZ01000098.1| GENE 67 68448 - 70112 1235 554 aa, chain + ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 6 548 2 553 561 421 40.0 1e-117 MLNETSRTWWQQEIFYQIYPASFKDSNNDGIGDLPGITSELPKLKALGVTAIWLSPVYRS PMVDNGYDISDYQAIDPRFGTMADFDALMAAAKELGIKVVMDLVVNHTSDQHPWFQAALK DPTSPYRQYYIFRKGHDGQPPNNWRSNFGAGSAWTAVPGEADMYYLHVFSPQQPDLNWEN PKLRQAIYQMINWWLAKGLAGFRVDAITFIKKDQDFAAITPDGNDGLGKVKRKAENRPGL ARFLKELNAATFKPANAVTIGEASGVAYDELGDFIGPNGYFSMIFDFHYADIDVASGSEW FKQTQWTPKMLGDAIAKSQLAIQRVGWGANFLENHDQPRSLSKYIREPAYRNATGAKALA LLYFCLRGCPFIYQGQELGMVNAVRSSIDQFNDLSAHDNYRRALAEGYSEADALACVNRR SRDNARTPYPWNDEANGGFSDHQPWLPVAQQAPGVNWQDEQADPDSVWHFYQKLCQLRND SPLRSDLIDGDFAPLTVADEHVIAYARGKHLRIYVNLSATPATIDLPDGQIWLNNYPDAA PTLKPYQAILIEVN >gi|225002481|gb|ACIZ01000098.1| GENE 68 70114 - 72078 1796 654 aa, chain + ## HITS:1 COG:SPy1815_2 KEGG:ns NR:ns ## COG: SPy1815_2 COG1263 # Protein_GI_number: 15675645 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 98 457 3 358 385 237 39.0 5e-62 MAKNYEQEAKAILKLVGVNNVDSVTHCQTRLRFVVKDRKAIDDKALEQLPEVKGVFYGSG QYQVIIGTGVVNDVYAAIAKLGTVNAIYGKDDADTTAAAGDEHKTWVQRLMAMLSGIFIP IIPVIAATGLFLGLKSAATNAQVLKLFGAVPSDIPASLTSVISVLTDTVFAFLPALIVWS TFRYFKGTPIIGIVIGLMLVSPILPNAYSVADGSAKAIMLFGWLPVVGSQGSVLTALVAG FIGAKLELFFRRHMPNVLEQILTPFLTMLVTFAIMILGVGPLVHAIENGMLVGVQAVIHL PFGIGGFLIGAAYPLMVLIGIHQTMIAIETSLLASTGLNPLITLEAMYGFANLGVALAIF LRARSGKAKATSMGAFTSQLFGVSEPTLFGVLIRYNFRPLIVTVLTSGLGAAVLSILNVS ANSYGLAVVPSYLMYIYNGHALLWYTIVSLGTIVVAFVATNAFAIPKEVLAPDRDVETAN AVISSTVSDNKVYAPVSGETLALNKVSDPVFASGMMGDGLAIKPENAGVNKIYAPQSGTL SVVADTGHAYGLTSDDGMEILVHLGIDTVNLHGAPFTVAVKAGQHVKKGDLLGTMDRAAI EKAGLDPTTMVLITNSKAYARIEPVADTTVEAGADLLAVQREDVKVESVSPASL >gi|225002481|gb|ACIZ01000098.1| GENE 69 72313 - 75045 2226 910 aa, chain + ## HITS:1 COG:L118462 KEGG:ns NR:ns ## COG: L118462 COG1511 # Protein_GI_number: 15673652 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 888 4 879 901 705 42.0 0 MRNIGKLVALDWKRIFKSPLAFLLIAALVVIPSLYCWFNVWALWDPYSNTQDLKVAVYSA DQPATFRNQKVAVGDELTDQLKDNKQLGWRFVDSKQAVQKGVRSGKYYAGVVVPKHFSKD LLSFVDGKIHKPKLDYYVNEKINAVAPKITSTGATTLQNKISDEFISTAAKTLVKAFNKA GIKLDQNLPMIRRFTSLVTNTNDQLPTIEKYLAEVDQLQAKMPAIRAKLQTANEMAGYLP EINQMAQKLTGANGYLPMVQDAGELATNVKGKLPEVRQAGAQLNTVVTNFDQLESGVTKA VQVTDQGITVVNQVDGTLPALTDFGKNAQAAVATTKDDVIPKINTALGVVQNATDAGLTL IAAANTSLSADLTTLQQQLQQLDSSKDTAALKQAMAQRLTALANRQGKVAANATSLADTL TRVQTTLNQLTGKDDHVLDGAIAKLKEVAATATAVQRDAEALAKDVPNLSTSELQQRLGV LANTANQFADAANTLKALDLGTSVKQVLNDFKAALNDANTTLDTINQQILPSIPSLLSGT KDLLTQAHNFLVKAKKQLPALKQELTDANTLLNGHMDLITSGITTVADLYQNDFPSLKTK LTKATDFINQDLPGVESDLTNTLALANEKMPQLQSGLDDAQKFVKDDWPTLKEAIQKGAA AIKKGEKSVDLSQLIKLLRRDATKEAGFLAKPVELKQQSFYHIPTYGSQSAPFYLALCIW VGALLLGAILITEYRLPPTLSDATVKQMYTARWLTFAVLGMLQGLIAALGNLFLIGTYVV NKPLYLLFAMMLSLVFVSILYALISLFGNIGKGIGIIILVLSISGAGGNFPVVLSGKFFQ MINPWLPFTYAVNLLRETVGGIYWPNLWVDVAALLAFGIIFFLLGLFLKAPIHPWIERMN EKTRESKIIE >gi|225002481|gb|ACIZ01000098.1| GENE 70 75410 - 76594 1059 394 aa, chain - ## HITS:1 COG:no KEGG:LC705_02093 NR:ns ## KEGG: LC705_02093 # Name: not_defined # Def: transcriptional regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 394 1 394 394 684 100.0 0 MTKEAHQVVIPDAIMEDLDIKDGEQVEVTLKDKEAVIRPKRTDTGTQTISLRFFLIPTVL AGLFFLAYFIYFQILQVPMTGKNSIAQMVIVLGELSGMGTFAVTYVQNHRRIHGRDHRRR YWRIFPTLLLAFAIILAFVASVFFWAIGYMFEGVSFDIYTATGLFLLFISIVNYLMIYSA LSISTSFITTLFLSTFVGGVVGAIVTNSSRQWWQHNVSFLGTSKALNAWQFNLTIAVSAL LWIALVDYLFVPLMAHRKTDWRLITMRIMLTVAAVALLGVGLFPNNRGIWHVLHTQSAWF LNYFLIGMIIAVRWLLPGVSREFLSTSYIIGGIIIFAAILFQFVHYLSLTAFEMIAFALA MSWIMLLLQNIHRLYQKDESTFVVTVTTKKEKAE >gi|225002481|gb|ACIZ01000098.1| GENE 71 76718 - 76861 58 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MASQRLVDSTIFFLFELLVKLLVVLGDVNEDYAEIVLIVARKRHYDR >gi|225002481|gb|ACIZ01000098.1| GENE 72 76951 - 80040 2159 1029 aa, chain + ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 5 1021 6 981 992 367 30.0 1e-101 MGIERNELAFESKLIDHLQHIGGTKQWQYLPDIKDGEDLWQNFKVILERNNADQLQKPLS VAEFNQVQAKIRNLRSPYEAGQFLYGLNGTSQIEVDRDDGKHVFLTVFDQAEVGAGNTVY QIVNQIRRPPVQAGRPARRFDVTLLINGLPIIQIEEKADSHDPKEALNQMHQYIHERQYT DIFSTLQILVSMTPHDIRYMANTTDDMFNLDFAFRWQRESDNRPIRDWREFSNLMLSIPM AHQMATNYIILDGTKNRKMIKVMRPYQVYATIRVINKIRRQQFGLDPKEVGYIWHTTGSG KTISSFKAAWLASRLPNVDKVVFLVDRIALTNQTVDEYRAYDPDSDPDGKNGVVADTANK TVLKQKLKTKRSGIIVTSIQKLDGLARNNFKFDKNVVFIVDEAHRSTAGEMIQHIKAAFP KSAWVGYTGTPNFDATKGPTTYEIFGEVLHAYTIRDAIADHNVLGFKVDFETTLTDSALR ESYLPKYFAWRYPEWPKEKIENRINNMTADDMDDAVLPSVYDGNQDHIRLVVKDVLDNWQ KRSNNYAYNALFTTHVGGQQSSIKNAVSFYEEFKRQNAKRKRPLRIGITFSMDTTNSSTQ QGTNDGLLEAINDYNAAFGEHFDLTNVRGYSEAVVTRLNKTVDDKRYFDLVIVVDQLLTG FNAPELNCLYVDRTLKGANLIQAYSRTNRVQNFQTKPFGRIVNYRWPNQSEKLMKEAIQV YANRDSANVQLTVGPDDTSGVIEKSYNDLKDEMKKIVKEAASLTGNFTMTPPSESAQEHL YNLLHDYNLTMAKLKQDDKYDIDHPETLLSQIGLTPDQEIQLTTVIAGDLKANIAEKRNI DISDLTLQMEHVKDIRVTYDYISELLAELANKVHDNDQEGSTATRTQIQQATEQMDDERY ATNIRSLADALVNGETKAEQYPVKANDVKSMITNHINQTKRLIIRDFKQWWGVSDIPSDR LINQIVEEHTLGEDDLNATGALNSILKEGQATYKTDAKDEKVRQLSPIKFRNKFRQAFAE FADQYKKQF >gi|225002481|gb|ACIZ01000098.1| GENE 73 80056 - 81705 1033 549 aa, chain + ## HITS:1 COG:SPy1906 KEGG:ns NR:ns ## COG: SPy1906 COG0286 # Protein_GI_number: 15675719 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 1 543 1 525 526 452 44.0 1e-126 MAEKNIAQEITSQLWAMANELRGNMDASEFRNYILGFMFYRYLSEHQERYLQETNLFEPE AGQTWNDAFREVASDPESRKEYLEDISSELGYAIAPEQTWASLVQKVNDDKIVPSDYQDL FDDFNKNAALNPNSEADFRGIFADINLGDSRLGSSTTARAKALNGVVRLVDQFEYNDKQG RDILGDVYEYLIAQFAGNSGKKAGEFYTPHQVSKVLAKLVALGVQKDQEIFTVYDPTMGS GSLLLTVRDELPATVKAVMFHGQELNTTTFNLARMNLMMHNVPYTNMSLRNADTLEDDWP DGVVGGVDSPRSFDAVVANPPYSIHWDNSENKLKDPRFKPFGALAPKSKADFAFVEHGLY HLNDTGTMAIVLPHGVLFRGAAEGKIRKAIIEKNYLDAVIGMPAGLFFSTGIPTVVLVFK KNRTNRDIFFIDASNNFEKGKNQNILRDSDIDKIIEAYSKREDVDKYAHKAELDEIVENE YNLNIPRYVDTTEPEKPIDVVQVVADIKETDKKIAKLSSELAKDIDDLVANNDEAAKQLA ALKELFKNE >gi|225002481|gb|ACIZ01000098.1| GENE 74 82412 - 82921 26 169 aa, chain + ## HITS:1 COG:SA0392 KEGG:ns NR:ns ## COG: SA0392 COG0732 # Protein_GI_number: 15926110 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 6 144 46 184 403 82 33.0 3e-16 MNLPILTISAGKGWLTQEQRFSQNIAGNELKKYTLLSKGELSYNHGNSKLAEYGAVFVLK QFKEALVPRVYHSFNVSGKADPDFIEYLFESGVPNHELRKLISSGARMDGLLNINYDSFM NISVLLPSIEEQNKIARVLEKLKKLTDETRLRLFNLQQAKKSLLRMLFP >gi|225002481|gb|ACIZ01000098.1| GENE 75 83009 - 83935 427 308 aa, chain + ## HITS:1 COG:lin0524 KEGG:ns NR:ns ## COG: lin0524 COG0582 # Protein_GI_number: 16799599 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 2 308 5 309 309 375 59.0 1e-104 MKQRTQKFHMYFKQWIELYKEGAVRPVTYQKYQMSHKHLVTLAPDLHMDELKRRTYQELI NEFAANHEKQTTLDFHHHLKAAILDALDEGLLEQDPTRKVVIKGTVSRMHKVKFLNQHEL TKLLALLDLDGGLGWDYFLLLIAKTGLRFGEALGVTPADFDMAKLTLTINKTWDYKSATG SFAETKNTASVRKVPLDWQVAMQFATLIKNLPQDRPIFVTEGQRVYNETANDILERKCKR ASIPVISIHGLRHTHASLLLYAGVSVGSVARRLGHANMSTTQKTYLHIIQELENQDNDKI MRYLTSLM >gi|225002481|gb|ACIZ01000098.1| GENE 76 83983 - 85143 193 386 aa, chain - ## HITS:1 COG:SA0392 KEGG:ns NR:ns ## COG: SA0392 COG0732 # Protein_GI_number: 15926110 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 11 386 21 403 403 97 26.0 5e-20 MTPIFYPINAWEKRKFGDLYSKTSEKNDGSFGPDKIISVATMSWKTNVRISSEDYLATYN VLRKGDIAFEGNKSKKFSFGRFVENDIGDGIVSHVFVVFRPKVSPIISYWKYFIHNEFVM RNILRKSTIKATMMTNLSSHDFLRQTLCTPSFKEQENIGNFLERLDSLIAATQGKLDNLE KIKRALLKHLFDQSMRFRGYSDPWEKRKFGELYKPNKERNESAEFSSENTLSIATMTVNR KGNGAAKTSLLKYKVIRIGDIAFEGHTSKKFAFGRFVLNDVADGIMSPRFTCLRPIHRQI IQFWKQYIHYEPILRPILIRSTKLGTMMNELVVPDLLKQNIRVPSINEQKLIGKSLSRVD DLIAATQSKLSSLETLKKALLQGLFI >gi|225002481|gb|ACIZ01000098.1| GENE 77 85290 - 86096 540 268 aa, chain + ## HITS:1 COG:no KEGG:LC705_02087 NR:ns ## KEGG: LC705_02087 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 268 1 268 268 485 100.0 1e-136 MSLIDTINRVINMISLVILLFYIVKVYRQVRSLDFLDYFVMYLKHRRTIYAEMQRNPQLR QKQLLSLFVSLMILTFWVIGSLEKLLTAWNLGNFINALMTLWLFAFFIYQTWQTKYLNEQ NRYLSLGNRYQRKHFDDVMAIFHRKLVAWVPVNDEDARELARFRRLYARVEEQARRDQKA AMLSDDVYALFDDQLLLRDDGEPLTNREKRLLSYYVGYWDAEPYNDYSLSMIEDMDERER RITSKVLNVVMTVTAAGLVLLAIRQIVG >gi|225002481|gb|ACIZ01000098.1| GENE 78 86540 - 87790 1108 416 aa, chain + ## HITS:1 COG:lin0473 KEGG:ns NR:ns ## COG: lin0473 COG1457 # Protein_GI_number: 16799549 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Listeria innocua # 5 405 8 413 427 359 51.0 7e-99 MEENKRDQTWFGLAMILCGALVSIPSLILGGSLVSGMSLPAAILTGLAGYGFIVLMMISQ GMQSVDQGKPAVVVAQQVFGKVGSSKVISIIIAIAALGWFGIQANVGGLAVANLLKYVGL PIPAWLASLLTGLLMVVTAMYGVKLIRLLAYVAVPYLVIVILYGLWFAFAKQDAAATIAA YHPSGSLSFVNGFSSTVGSFAMAGVIVGDYAQFSKKRSDVVKAAIFGVIPAGVLMIAVGA ILTIAFKSTDISSLFMKIGSPVVGGLALILGTWKVNVVNAYSGGIAVANIFNIPEKYRKL TLFLVGVGGTILSILGILNYFEPVMTIFSAMIPPVAGAMAASYWVIHRGELHSWQPVAGV NWLGLTAWALGAVVGVLPVLWPAIPNIPVLGIILAFVLYYAGAKIHPEWDKASELN >gi|225002481|gb|ACIZ01000098.1| GENE 79 87907 - 88995 1003 362 aa, chain + ## HITS:1 COG:lin0474 KEGG:ns NR:ns ## COG: lin0474 COG3535 # Protein_GI_number: 16799550 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 362 1 362 366 484 63.0 1e-136 MRLLDQESIENIATGAAFFGAGGGGNPFLGKLMALDAIKKHGPVKLLDVSEINDDDYFCP AAIMGAPAVMMEKIPKGDEFERVFKMLSQYTGHEFVGTFPMEAGGVNSMVPIALAASLGI PLVDCDGMGRAFPELQMVTFYLGGVAATPMVITDEKGNAGVIKTISAKWAERLARVQTVE MGGSATVALYPSNGKQIKQNGIRGIVTLCEQVGLRIRDAHLNPAKALAEILEVTNGHLIF EGKVIDVVRRTERGFNVGDIKIDGFNDFQDQHLSVLIQNENLLALRNDQPIVMTPDLIEI VDADTLLPVTTEVIKYGKRVKVLATPADARWRTKAGIQTAGPRYFGFDYDYQPVEDLVAK AD >gi|225002481|gb|ACIZ01000098.1| GENE 80 89066 - 90622 1487 518 aa, chain + ## HITS:1 COG:lin0475 KEGG:ns NR:ns ## COG: lin0475 COG0145 # Protein_GI_number: 16799551 # Func_class: E Amino acid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: N-methylhydantoinase A/acetone carboxylase, beta subunit # Organism: Listeria innocua # 1 516 1 515 516 604 60.0 1e-172 MYRLGIDVGGTNTDAIILDDQQHVINSVKRHTTKDIQTGITNAIQAVLADQQLDLDQINK AMLGTTQITNAIVERKHIARVGVLRLAYPATEAIPPYTAWPEDLVAKLSGKYAIVKGGYE YDGQILNELDPDEINAVLAKWRGEVDAIAIIGVFAALRVDQEQQAADLVHAAYGDTFPVT MSHEVGSLGLIERENAAILNAGLFRVIENTVDGFERALAESGIKHASLYLTQNDGTLMTA SYARHFPILTIGSGPTNSIRGAAYLSHLKNAIVVDIGGTTTDLGVLQAGFPRESSIAVTV GGVATNFRMPDIMSIGLGGGSIVRQQRDGSVTVGPDSVGYQITEKALTFGGNIVTATDVA VRLGLSDVGNPELVKQIPLKFAQAAMTTIGQMIAVAIDKMKTSPEPATVVLVGGGAIIAP HHLEGVGKLVRDPLGGVANAIGASISQVSGEYGRIYPYNQIPRDQAMADAKKKAIEAAIE SGADENTIEVVEVDEVPLAYHPENANRVKIKVVGNLAK >gi|225002481|gb|ACIZ01000098.1| GENE 81 90840 - 92519 938 559 aa, chain + ## HITS:1 COG:CAC2633 KEGG:ns NR:ns ## COG: CAC2633 COG4632 # Protein_GI_number: 15895891 # Func_class: G Carbohydrate transport and metabolism # Function: Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase # Organism: Clostridium acetobutylicum # 177 366 149 352 354 70 27.0 1e-11 MVRKRWTVIGSLLLMAALMGGDVAAPVVAVTATDTPVVSSTAATVSQKPASASSTAASSS VALSPASSTGTNNSTSASQASANTAKNAFNSTTATASKTTSPTTSTQVPAANPVIKSIID QHEATLTPGVTEQRLTYISQSGTQNKYYSVALNPKNPNTQLLTGTPGDGATSGVQTVSDQ ASAAIKNGHQVVAAVNGDLFKIASGVPTGNVIKDGVELHAATSARESFFGIKKDGTPIIG DEQTYQKVKGDLQQALGGRNILVADGKVNETKAIGTDSEPRTAVGIKADGTVFFVVVDGR QAPTSNGLSMVDLANLMIQRGAVTALNLDGGGSSTYVAREPGETQLSLQNQPCDGKERTV ANAWLIASKTTSDHQLASAQLTPDDAVYTPNSTVTFKAKGVDASGSSASLPAEGLNWRLT NTKMGTIDAKTGVFHSNGTQGKATIQLTLNGRLLGSATITIAMPDKLTFSQPELSVKKGA TQALTLQATYQGRAVTLKSCDLQWQVPAKLGILTTGDQLQAGQQVASDTIEAKLKNSDLH ASIKVDVGRLPEVLDDFES >gi|225002481|gb|ACIZ01000098.1| GENE 82 92538 - 93521 645 327 aa, chain + ## HITS:1 COG:no KEGG:LC705_02082 NR:ns ## KEGG: LC705_02082 # Name: not_defined # Def: N-acetylmuramoyl-L-alanine amidase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 327 567 893 893 555 97.0 1e-157 MTASRGEQANIGLSSAADGQVRFGKHALRLDYDFSSGTKSATLGVYAGPQTSQKMPGMPT GVGMWIYATPEAKGYWLRMYVTDATGAAKPIDLTTQDTGIDWTGWKYVEAPIPADYQGPF SISPEQALCMISLKAGQSDGGPMTKGSLYIDNIRAMYGTNPDDSKAPLISHINVAGQTYT TPQVAITTTATDDTRDPNASGIDWTKTRIWVDGNEYTNAKEHLTVNTKDHTLTLAGYQWQ NGTHHVKVSVQDKFGNETEQKADFNVNVGATTSGETSSSSASSVASKKNSDQLPATGENN WATGILGLLLVVASAAIYLLSGYRRTR >gi|225002481|gb|ACIZ01000098.1| GENE 83 94101 - 94913 478 270 aa, chain + ## HITS:1 COG:CAC3498 KEGG:ns NR:ns ## COG: CAC3498 COG0524 # Protein_GI_number: 15896735 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Clostridium acetobutylicum # 2 268 5 289 295 134 30.0 2e-31 MKIIAIGDNVVDLYPADKKMFLGGHAANTAAFATMMGLDAAYLGTFGNDARGDFARRTLI ELGVDLSHSLQYDGPNAFTTMKITTGKRHQTVGEPVQELQLSRDDIAYINTFDLVYLNNE SGADAFLSAITAPTIYDFSTIDDDRIFKKIAPQIDLAYLSGKAKSDDDVEALCRRVAAAG CQRVVCSRGLRGSAALVADMMSWQQALGVKAVDALGAGDAYITCFAATLYSSQKPTLDAK VSESLSHAAKFASAQVQLPGSFGHGAALIA >gi|225002481|gb|ACIZ01000098.1| GENE 84 95392 - 96009 480 205 aa, chain - ## HITS:1 COG:no KEGG:LGG_02085 NR:ns ## KEGG: LGG_02085 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 205 1 205 205 268 96.0 6e-71 MSKKYWIGSVAFAGLLVGSFSAGSLVLAADADSGSTNTSVTVTPVSIGLSAPNNLTFPSL SVESIVKGGLNESVNVSDSSILTVSDFRGTGSGYSVTAKASPIATSSGEELKGAVIKLVP DATTTMNSVSPEWTKPVALTTTDQQLFATTTTLDGAGISSYDLNKTTLAVPQDNTVKAGS YSGVITFTLTPGQPAQAATANPNPS Prediction of potential genes in microbial genomes Time: Wed May 25 20:14:22 2011 Seq name: gi|225002480|gb|ACIZ01000099.1| Lactobacillus rhamnosus LMS2-1 contig00107, whole genome shotgun sequence Length of sequence - 117795 bp Number of predicted genes - 103, with homology - 101 Number of transcription units - 60, operones - 22 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 629 - 688 2.0 1 1 Op 1 . + CDS 708 - 1310 481 ## LC705_02079 hypothetical protein 2 1 Op 2 . + CDS 1351 - 3930 2079 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 3943 - 3978 2.1 - Term 3931 - 3965 2.6 3 2 Tu 1 . - CDS 4007 - 4714 392 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 4741 - 4800 9.2 - Term 4823 - 4890 18.3 4 3 Op 1 . - CDS 4906 - 5649 666 ## COG3022 Uncharacterized protein conserved in bacteria 5 3 Op 2 . - CDS 5707 - 7929 1589 ## COG3345 Alpha-galactosidase + Prom 8386 - 8445 5.9 6 4 Op 1 . + CDS 8531 - 9967 1416 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 7 4 Op 2 . + CDS 9964 - 10128 63 ## LGG_02077 hypothetical protein 8 4 Op 3 . + CDS 10206 - 10616 294 ## LGG_02076 hypothetical protein 9 4 Op 4 1/0.000 + CDS 10698 - 11798 863 ## COG3589 Uncharacterized conserved protein 10 4 Op 5 . + CDS 11822 - 12163 451 ## COG1447 Phosphotransferase system cellobiose-specific component IIA + Term 12241 - 12299 17.5 - Term 12231 - 12285 12.2 11 5 Tu 1 . - CDS 12317 - 12883 552 ## LGG_02073 hypothetical protein - Prom 12913 - 12972 5.9 + Prom 13054 - 13113 6.0 12 6 Op 1 17/0.000 + CDS 13310 - 14092 544 ## COG0247 Fe-S oxidoreductase 13 6 Op 2 13/0.000 + CDS 14089 - 15573 1092 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 14 6 Op 3 . + CDS 15566 - 16273 630 ## COG1556 Uncharacterized conserved protein + Term 16305 - 16352 4.3 + Prom 16659 - 16718 4.2 15 7 Tu 1 . + CDS 16771 - 17334 531 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 17361 - 17417 7.5 + Prom 17377 - 17436 2.4 16 8 Op 1 21/0.000 + CDS 17500 - 18627 686 ## COG0477 Permeases of the major facilitator superfamily 17 8 Op 2 . + CDS 18449 - 18964 317 ## COG0477 Permeases of the major facilitator superfamily + Term 18998 - 19040 6.1 + Prom 19260 - 19319 8.8 18 9 Op 1 21/0.000 + CDS 19362 - 20981 1397 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 21024 - 21070 1.6 + Prom 21018 - 21077 1.5 19 9 Op 2 49/0.000 + CDS 21163 - 22086 755 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 20 9 Op 3 44/0.000 + CDS 22086 - 23084 923 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 21 9 Op 4 44/0.000 + CDS 23096 - 24148 1129 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 22 9 Op 5 . + CDS 24150 - 25133 503 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 + Term 25195 - 25239 5.1 + Prom 25249 - 25308 3.0 23 10 Op 1 . + CDS 25379 - 26017 624 ## COG0406 Fructose-2,6-bisphosphatase + Term 26018 - 26053 1.0 + Prom 26175 - 26234 3.0 24 10 Op 2 . + CDS 26265 - 26576 432 ## LGG_02060 XRE family transcriptional regulator + Term 26622 - 26664 10.3 + Prom 26712 - 26771 3.4 25 11 Op 1 . + CDS 26857 - 27081 356 ## LGG_02059 methionyl-tRNA synthetase 26 11 Op 2 1/0.000 + CDS 27078 - 27791 258 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 27 11 Op 3 . + CDS 27908 - 28408 444 ## COG4708 Predicted membrane protein + Term 28425 - 28463 5.4 - Term 28635 - 28690 2.0 28 12 Tu 1 . - CDS 28757 - 29482 765 ## COG1835 Predicted acyltransferases - Prom 29511 - 29570 8.1 + Prom 29668 - 29727 4.9 29 13 Op 1 5/0.000 + CDS 29823 - 30737 459 ## COG3944 Capsular polysaccharide biosynthesis protein 30 13 Op 2 2/0.000 + CDS 30756 - 31508 240 ## COG0489 ATPases involved in chromosome partitioning + Prom 31538 - 31597 2.4 31 13 Op 3 . + CDS 31644 - 32651 20 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 32 13 Op 4 . + CDS 32689 - 33909 333 ## lp_1185 polysaccharide polymerase 33 13 Op 5 26/0.000 + CDS 33902 - 34891 312 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 35370 - 35429 4.9 34 13 Op 6 . + CDS 35469 - 35972 -23 ## COG0438 Glycosyltransferase + Term 36083 - 36128 -0.6 + Prom 36483 - 36542 4.2 35 14 Op 1 . + CDS 36684 - 37007 105 ## gi|229553154|ref|ZP_04441879.1| possible cell wall biosynthesis glycosyltransferase 36 14 Op 2 . + CDS 37022 - 38098 248 ## COG5039 Exopolysaccharide biosynthesis protein + Term 38211 - 38252 4.3 + Prom 38139 - 38198 5.4 37 15 Op 1 . + CDS 38337 - 39584 412 ## lp_1205 transporter 38 15 Op 2 . + CDS 39637 - 40419 300 ## LGG_02048 glycosyl transferase, alpha-1,3-galactosyltransferase 39 16 Tu 1 . + CDS 40858 - 41283 216 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis + Term 41457 - 41509 14.4 - Term 41445 - 41497 17.4 40 17 Op 1 5/0.000 - CDS 41515 - 42219 311 ## COG3436 Transposase and inactivated derivatives 41 17 Op 2 5/0.000 - CDS 42486 - 43019 174 ## COG3436 Transposase and inactivated derivatives - Prom 43043 - 43102 5.2 - Term 43063 - 43109 9.6 42 18 Op 1 . - CDS 43121 - 43474 296 ## COG3436 Transposase and inactivated derivatives 43 18 Op 2 . - CDS 43449 - 43646 153 ## LSEI_1102 hypothetical protein - Prom 43669 - 43728 3.2 - Term 43748 - 43803 14.4 44 19 Tu 1 . - CDS 43818 - 44711 694 ## COG1316 Transcriptional regulator - Prom 44771 - 44830 4.5 45 20 Tu 1 . + CDS 44868 - 45632 675 ## COG4464 Capsular polysaccharide biosynthesis protein - Term 45517 - 45559 2.5 46 21 Tu 1 . - CDS 45635 - 46753 675 ## COG0562 UDP-galactopyranose mutase - Prom 46776 - 46835 3.4 + Prom 46740 - 46799 4.5 47 22 Tu 1 . + CDS 46969 - 47118 85 ## LGG_02036 capsular polysaccharide biosynthesis protein + Term 47160 - 47199 4.0 48 23 Tu 1 . + CDS 47509 - 49659 1406 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 49668 - 49716 14.0 49 24 Tu 1 . + CDS 50300 - 50701 329 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 50735 - 50781 10.5 + Prom 50767 - 50826 4.9 50 25 Tu 1 . + CDS 51002 - 52933 1645 ## COG3855 Uncharacterized protein conserved in bacteria + Prom 52935 - 52994 5.0 51 26 Tu 1 . + CDS 53037 - 53867 704 ## COG1284 Uncharacterized conserved protein + Term 53918 - 53957 3.2 + Prom 54113 - 54172 5.6 52 27 Tu 1 . + CDS 54240 - 55142 625 ## LGG_02030 hypothetical protein + Term 55219 - 55267 11.2 - Term 55202 - 55259 16.6 53 28 Tu 1 . - CDS 55294 - 56400 989 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase - Prom 56459 - 56518 5.6 + Prom 56433 - 56492 6.0 54 29 Op 1 6/0.000 + CDS 56686 - 58749 1371 ## COG0296 1,4-alpha-glucan branching enzyme 55 29 Op 2 7/0.000 + CDS 58779 - 59921 952 ## COG0448 ADP-glucose pyrophosphorylase 56 29 Op 3 17/0.000 + CDS 59918 - 61087 979 ## COG0448 ADP-glucose pyrophosphorylase 57 29 Op 4 10/0.000 + CDS 61080 - 62525 1271 ## COG0297 Glycogen synthase + Prom 62583 - 62642 2.1 58 29 Op 5 1/0.000 + CDS 62673 - 65084 2242 ## COG0058 Glucan phosphorylase 59 29 Op 6 . + CDS 65106 - 66884 1120 ## COG0366 Glycosidases + Term 66944 - 66982 2.2 - Term 66923 - 66976 12.9 60 30 Tu 1 . - CDS 66998 - 67927 878 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis - Prom 67959 - 68018 4.8 + Prom 67952 - 68011 4.8 61 31 Tu 1 . + CDS 68078 - 68413 364 ## LC705_02020 ArsR family transcriptional regulator + Prom 68499 - 68558 5.6 62 32 Tu 1 . + CDS 68588 - 69526 943 ## COG0053 Predicted Co/Zn/Cd cation transporters - Term 69470 - 69504 -0.8 63 33 Tu 1 . - CDS 69590 - 69775 108 ## - Prom 69949 - 70008 2.2 64 34 Tu 1 . + CDS 69932 - 71203 630 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Term 71291 - 71340 11.8 + Prom 71327 - 71386 4.3 65 35 Tu 1 . + CDS 71505 - 72704 1135 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 72739 - 72771 4.0 66 36 Tu 1 . + CDS 73137 - 73544 545 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Prom 73574 - 73633 4.9 67 37 Tu 1 . + CDS 73654 - 74256 533 ## COG0194 Guanylate kinase + Term 74357 - 74413 15.4 - Term 74348 - 74396 10.2 68 38 Tu 1 . - CDS 74458 - 74571 91 ## - Prom 74628 - 74687 4.8 69 39 Tu 1 . + CDS 74680 - 75132 187 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 75171 - 75220 11.1 + Prom 75263 - 75322 5.1 70 40 Op 1 . + CDS 75389 - 75832 293 ## LGG_02011 hypothetical protein 71 40 Op 2 . + CDS 75853 - 76812 971 ## LC705_02008 hypothetical protein + Term 76854 - 76906 11.1 + Prom 77028 - 77087 6.8 72 41 Op 1 16/0.000 + CDS 77120 - 77857 544 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 73 41 Op 2 31/0.000 + CDS 78051 - 78875 855 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 74 41 Op 3 17/0.000 + CDS 78877 - 79521 660 ## COG0765 ABC-type amino acid transport system, permease component 75 41 Op 4 . + CDS 79537 - 80199 602 ## COG0765 ABC-type amino acid transport system, permease component + Term 80237 - 80287 7.5 + Prom 80504 - 80563 4.7 76 42 Op 1 12/0.000 + CDS 80637 - 81572 719 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 81577 - 81621 1.2 77 42 Op 2 1/0.000 + CDS 81655 - 82410 638 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 78 42 Op 3 . + CDS 82433 - 83173 378 ## COG3774 Mannosyltransferase OCH1 and related enzymes + Prom 83191 - 83250 4.7 79 43 Tu 1 . + CDS 83291 - 84691 930 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis + Term 84738 - 84789 6.6 + Prom 84856 - 84915 10.0 80 44 Tu 1 . + CDS 84938 - 85792 583 ## LC705_01999 hypothetical protein + Term 85817 - 85870 4.8 + Prom 85875 - 85934 6.5 81 45 Op 1 . + CDS 85999 - 87141 848 ## COG0381 UDP-N-acetylglucosamine 2-epimerase 82 45 Op 2 . + CDS 87212 - 88204 607 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Term 88247 - 88288 3.0 83 46 Tu 1 . - CDS 88316 - 89356 412 ## COG3936 Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation - Prom 89401 - 89460 5.5 84 47 Tu 1 . + CDS 89630 - 91117 746 ## LC705_01995 hypothetical protein + Prom 91152 - 91211 7.7 85 48 Tu 1 . + CDS 91242 - 93317 1516 ## LC705_01993 lyzozyme M1 + Term 93353 - 93411 3.1 + Prom 93323 - 93382 3.7 86 49 Tu 1 . + CDS 93512 - 95293 1069 ## LC705_01992 hypothetical protein + Prom 95346 - 95405 5.3 87 50 Op 1 . + CDS 95554 - 96519 610 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 88 50 Op 2 . + CDS 96572 - 97708 414 ## LC705_01990 hypothetical protein 89 50 Op 3 . + CDS 97789 - 99162 687 ## LC705_01989 polysaccharide biosynthesis protein + Prom 99168 - 99227 3.5 90 51 Op 1 5/0.000 + CDS 99249 - 99941 522 ## COG3944 Capsular polysaccharide biosynthesis protein 91 51 Op 2 . + CDS 100003 - 100641 516 ## COG0489 ATPases involved in chromosome partitioning 92 51 Op 3 . + CDS 100717 - 101766 521 ## LC705_01986 hypothetical protein + Term 101778 - 101822 11.4 + Prom 101903 - 101962 5.3 93 52 Tu 1 . + CDS 102056 - 104380 974 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Prom 104533 - 104592 6.1 94 53 Tu 1 . + CDS 104692 - 105486 521 ## COG0726 Predicted xylanase/chitin deacetylase - Term 105637 - 105690 -0.5 95 54 Tu 1 . - CDS 105720 - 107015 510 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 - Prom 107186 - 107245 2.9 - Term 107236 - 107280 1.8 96 55 Tu 1 . - CDS 107293 - 108177 622 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 108255 - 108314 3.8 - Term 108404 - 108450 11.0 97 56 Tu 1 . - CDS 108503 - 110173 1484 ## COG0531 Amino acid transporters + Prom 110374 - 110433 5.1 98 57 Op 1 36/0.000 + CDS 110473 - 111231 300 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 99 57 Op 2 . + CDS 111244 - 113052 1521 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 113105 - 113156 11.6 + Prom 113336 - 113395 4.1 100 58 Tu 1 . + CDS 113486 - 114379 914 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 114419 - 114466 7.8 - Term 114407 - 114454 7.8 101 59 Tu 1 . - CDS 114512 - 115177 664 ## COG0406 Fructose-2,6-bisphosphatase + Prom 115383 - 115442 5.2 102 60 Op 1 . + CDS 115472 - 116443 728 ## COG0276 Protoheme ferro-lyase (ferrochelatase) 103 60 Op 2 . + CDS 116427 - 117782 1267 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family Predicted protein(s) >gi|225002480|gb|ACIZ01000099.1| GENE 1 708 - 1310 481 200 aa, chain + ## HITS:1 COG:no KEGG:LC705_02079 NR:ns ## KEGG: LC705_02079 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 200 1 200 200 350 95.0 2e-95 METNHTNSQPAAAERQPEIRLPNGTTTKGVLLHRGMANLQHDVNHADFEPQTKVYLAWLN DLNGNRFGLKITDANDQLLLRQTEFLDDAIKELAYADAPANAELTPDDYKPAQKFYVPSA GLIALVAGLQWAARHKCQDVVVYSTHRRDLTFYQPRHQPTFIQQWAQQQLQSFPADFRFR IATKLDRDATHETTKLRMQL >gi|225002480|gb|ACIZ01000099.1| GENE 2 1351 - 3930 2079 859 aa, chain + ## HITS:1 COG:CAC2854 KEGG:ns NR:ns ## COG: CAC2854 COG0507 # Protein_GI_number: 15896108 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Clostridium acetobutylicum # 110 757 94 704 739 170 27.0 1e-41 MPQTQVYENVDLQIIKLLFNSDSSDYKVYAVRVLNPNPALKMTLTQEATVTGDMGYYNRR AIITADLVYDDADSLRYRKPSYKVARLHFGLPKEPRRQWQLLETLLVHQPTVLRRLHEAF ADDEPILAIFSKATIKDKRIPGIGPATIQKIATAIRGKLEVAVLANHWGKALSSMTYEKI WLAYKDAELAMHHIDANPYLLMQVAQFDFKKADAFAKSRGVAANDPHRLAAGLQYIFRTA VLTQGLTYITITWFKQQAATLLGVRAEDLTMFADPKQALAYGFLLNEQYDLVTSCDMFAT EGSVAKIMTVAQKTAEPLIKPEELDDKLDQFLDRHQLVINDQQRAAFQNVNQHGLSVLNG SAGTGKTWLTNLLVHFFNAQAKGKSVLLAPTGRAAKVLAKYTHEPATTIHAYLHLLPGEE LERFNAESDWETFGDARLIIVDESSMLTTPLAYTVLKHVNFKKAHVLFVGDVFQLPPIGP GNFLKDCLADSQVAATTLTRVYRQDAQSGVLALANRIRDRLPLPFGPDDDRYVSGNVALY NQRDAGRVFDAGIKAYQDALAKSGHELDSQLLIVNKNVGATGRLRFNAELQALVNPARPG EEEYVSSYVDPVTKQKHHLRMRDRVMILKNDKHVALVDPKTWERRAVLGENGLQQTDEFG TKRWRETIMANGDTGVIAHIDTKRRFLVVQVGQQYCYYSFGSVARALTLAYAITVHKAQG GQADTVIAIVNGADHMLNAQSFYTALTRTQARFIFFGDFRVLLARTQIYPMDTRHDLLGS LLSGQLTVDNFSRFTFEQILAWLDHQQRQGNQPRAALEAEKPDATSQPFSVRYAEQLDIL NQVVETVAKLPVRKSSVEH >gi|225002480|gb|ACIZ01000099.1| GENE 3 4007 - 4714 392 235 aa, chain - ## HITS:1 COG:CAC0445_1 KEGG:ns NR:ns ## COG: CAC0445_1 COG2771 # Protein_GI_number: 15893736 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Clostridium acetobutylicum # 14 141 30 163 163 83 32.0 3e-16 MQQGYYLESGYLHCHYCDTSFAVDEVYPQNGRYFTAEAMIKRHIQQVHNGALAALLQQPA SQLGVSASQQQVLRLFAQGLSDTVIAQRLKVSASTIRNYRFKFREKQQQAQHFLAAMALL ALPDALIMPHDGATMIDDRYAITPQEREKTLKAFLTPDGRVTNWPAKEKRKLIILSEIFK DFDPQKNYSETAVNEILQRHVSDYVTVRRNLIEYGFLNRTADGRTYWVNANGPAR >gi|225002480|gb|ACIZ01000099.1| GENE 4 4906 - 5649 666 247 aa, chain - ## HITS:1 COG:HI0984 KEGG:ns NR:ns ## COG: HI0984 COG3022 # Protein_GI_number: 16272922 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Haemophilus influenzae # 1 244 15 266 272 150 38.0 2e-36 MKFIIAPAKKMVVAQDDFPVQSQPQFRDQAAWLLRHMQQLTRAEAQTLWHTSEKLTGAAY EQLQISDVAAHQSPAIFSYVGIQYQYMAPDLLDDAGLAYIQQHLRILSGLYGILRPFDGI VPYRLEMQTRLAAAPNHSLYDFWGDRLYQALATIPGPIINLASDEYAKTIRPYLQPADQF INVRFAHDVNGKLKTRATYAKMARGEMVRYAATHRITTVEELTHFDSPTYRFDAQLSTTD ELVFIAK >gi|225002480|gb|ACIZ01000099.1| GENE 5 5707 - 7929 1589 740 aa, chain - ## HITS:1 COG:BH2223 KEGG:ns NR:ns ## COG: BH2223 COG3345 # Protein_GI_number: 15614786 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Bacillus halodurans # 4 705 3 715 748 441 35.0 1e-123 MANIEYDPQKQLFHLHNDTFSYIIQVIRGYLVKRYCGPALERFSGTAKLEDFSHAFNIQN DAAPFSLTTLPLEYSTLMGGDYRTPAYAVRNGHGQLIGNLKFHDFQILAGNKNFNGTLPT ARTPHGQTLVITMHDETDTLAVNLKYTIVGDLPVLLKQVAYHNLSDDTLTITHAASLQLD FDDHAYDLITLTGAHLSEASVTRQPLTPGKKSIASNYGASGPQGVPATILAAPATDDFAG EALGMALLWSGNFSYTAQVDQFGNSRLVMGLNPELFSWQLKPGEPFVTPEAAVAYTTNGL NDLSHIFHRFFADHVMPLPRKNLIEYNTWESTYFDVSEAKVRAEIPKAEALGVELIVIDD GWFKNRPNDAGQLGDWVPDPVKFPRGLRPIADALHERGLAFGLWVEPEMITENSELYAKH PDWAMQYVGQKPLRSRNQLILDLSQRIVQDHLIKVLTDLVRTNHIDYLKWDYNRHFSQPG SPVLPPDQQGEVGYRYTRGLYRVLKTLRDTFPDLLIENCSSGGGRLDGGMLAYTDQTWTS DFTDPVYRMKIMNGFSLFFPLKTFVSHFTMSPNLQDSRVTPLQTRALLSLVGVTGIECPP SQLSDAEAAAVKASFAFYKANRTELQNGSLYRLHPSHPNQDQVCWLITNEAKTKALVLTS AGVVSPIPHYQHVLLHYLNPEVSYQTNDKATATGAELNYAGITLPLAHGDFSATLMTLRV VSHLPQTTALPGGDIGELRF >gi|225002480|gb|ACIZ01000099.1| GENE 6 8531 - 9967 1416 478 aa, chain + ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 458 1 453 454 422 51.0 1e-118 MNAFIGWLNRHIVPVAAKIGSIRWLVALRDAFIAIMPAMMAGAVSTVLNVLIRDIPTQFK WMGIVDSMQWLIGINAMVWTGTLAILGLLFAFTFGYQLAVQYQVEPVTGGIVVLGTFIMS LPQNFMLPLKGTLSKGAAKLITDAGGVVDGKNVSMWGFFNFGKFFGSYGFFTVMIMGALA MTLYIWLMKKNVTIRMPEAVPPAIAKAFTGIIPATAALYLAGVVNYLFSLNKTTVIEFIA TIVQEPLLNMSQGFWAVLLMTLLVQIFWFFGLHGTNVLGPVLDSIWLTAQIANMNAFMKG EALPFVWTRNAFDLYAWIGGAGSTLLLLIAILMFSKRDDQRTVAKLSIAPGCFNVNEPVM FGLPIVLDPIYFIPFIVAPVVMVSIAYGAHMLGWVSPVKNQIVWSMPPFVNSIIATMDWR APILQAVNMVIGFLIYVPFVKAANKLDPELIVPEPPMKKAKTVADDRNGDRNLEGDAI >gi|225002480|gb|ACIZ01000099.1| GENE 7 9964 - 10128 63 54 aa, chain + ## HITS:1 COG:no KEGG:LGG_02077 NR:ns ## KEGG: LGG_02077 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 54 1 54 54 85 96.0 6e-16 MKSSTTPLILLNLSMTVIVFSAILPAPWRIISCLFGVIATAICTRWYLGLAREE >gi|225002480|gb|ACIZ01000099.1| GENE 8 10206 - 10616 294 136 aa, chain + ## HITS:1 COG:no KEGG:LGG_02076 NR:ns ## KEGG: LGG_02076 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 136 1 136 136 263 100.0 2e-69 MKIVMNLPVEASVFFNQLQQSAMADIRQHTGREPLAKSLQGFSYEKNWPNGRKARLTITE FAPNSVYAYELATPSDDFTVRYHLSPLSAGKSRLVYEEALVARTARGAANNRTSGFLLGW LRKRRFKKMARQMCAI >gi|225002480|gb|ACIZ01000099.1| GENE 9 10698 - 11798 863 366 aa, chain + ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 361 1 359 364 358 49.0 7e-99 MGKIGISLYPEQITVDQATDYLTMARQLGYRRLFTSLLQLSGHQGRDQLAIFKAVVAKAN QLGFQTIVDIAPPLFKELGIDYQDLSFFHELGVWGLRLDEGFTGQEEALMTHNQYGLKIE LNMSAGTNAIDAIMAFGPRLDNLLGCHNFYPQQYTGLGDDRFLAYSQKFRRHGVRTAAFV TAPSADHGPWPVSEGLPTLESDRHRSIASQVHHLRLTEVIDDVLIGNALANEADLKAAAL AFFCPYPALRVITDQAPSALEAKIAFSEAHLYRGDASDYLIRDTQPRVRYAGQPLPVHDA SGHLQRGDVVVVNETYTRYAGELQIVLRELPNDGRRNKIGSLTDEDLSLLPLLKPWRTFM LKQVSH >gi|225002480|gb|ACIZ01000099.1| GENE 10 11822 - 12163 451 113 aa, chain + ## HITS:1 COG:lin1830 KEGG:ns NR:ns ## COG: lin1830 COG1447 # Protein_GI_number: 16800897 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 6 100 4 98 100 97 63.0 5e-21 MSNVNEQTIMGLIMAGGNAKSEAFEAIQAAKNSDFDAATSHLKAADEALVTAHNVQTDLL TAEANGAHADVSLLLVHAQDHLMNAITFRDLAGEVVAIYQRLAANTTVANETL >gi|225002480|gb|ACIZ01000099.1| GENE 11 12317 - 12883 552 188 aa, chain - ## HITS:1 COG:no KEGG:LGG_02073 NR:ns ## KEGG: LGG_02073 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 188 1 188 188 363 98.0 2e-99 MRKQYRATLRALNSDCIGRQAHGFANFEVTDDDALQIRIEMFNTPADMNHMAVLESSGSD APVTPATSAQDQNHDGVIDEEEAEQVSGKVFVPLNNAPDKLKLVGGKYPEADDNGFYIYQ QRVVVSQLRQQLAKHYGHDVFTLDNTVVYVNGVQSDVLLPKTVASDLDEKKPYLTLPIAV GKLYKVMG >gi|225002480|gb|ACIZ01000099.1| GENE 12 13310 - 14092 544 260 aa, chain + ## HITS:1 COG:L174321 KEGG:ns NR:ns ## COG: L174321 COG0247 # Protein_GI_number: 15673715 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Lactococcus lactis # 1 246 1 245 256 327 63.0 2e-89 MKVVIFSTCIVDLFFPNVGAAMVEVLERFGCETFMPVKQICCGQPTYNSGYVKESQKVFR NEIDALLSVDADYIVGPAGSCVNMLREYRVLLKDDPEYAQKAKEVADKTYEFSQFLYRVL NVIDAGAELDTKATYHRSCHMTRLLGERTAPFVLLDHVKDLQMEPLPHIENCCGFGGMFS AKEPEISKQMVDEKVNDVLSTGAHVLISADPACLMNIAGRFSRRNEKIKIMHIAEVLNHN VNPERIKFHEPLGVEQEVRP >gi|225002480|gb|ACIZ01000099.1| GENE 13 14089 - 15573 1092 494 aa, chain + ## HITS:1 COG:L175101 KEGG:ns NR:ns ## COG: L175101 COG1139 # Protein_GI_number: 15673716 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Lactococcus lactis # 1 487 1 489 490 672 64.0 0 MSISTSDKPFLERVKESEQDKFMQASVAKSQDAQWDKREASRKELGNWPQWRDLGEQIRQ HVIKYLPDYLEEFSDNIEKRGGHVYFAKTDKEAAAYITNLAKQKQAHKIVKSKSMVTTEI NLDKELLKLPGTQLMETDLAEFILQEDDWAEPTHIVFPALAKNRDQVKTIFDKLGYKGDN DPEHLARFAREYLRRYFLQADFGITGCNFAIADSGLINLVTNEGNADLTMAIPKTQVVVM GMERIVPSLKEAETLDNMLSRSAVGQKLTSYCSFSGKQVAGEADGPEDFHVVIVDNGRSN ALGTPFEPVLQCIRCGACLNVCPVYRHIGGHGYGSIYPGPIGAVLSPVLDGYEKFGDLPF ASSLCAACTETCPVRIPLHHLLIKHREVMMDKLKTDHSFSDKIMKMVGVGTSAPVLFNMA LDMDHAMMGVLATKDQGSVENEYNSGRIKQTGMMPKLARGWTDVRDLPRPPKKNENFRHW FKQHKAALEAQKHD >gi|225002480|gb|ACIZ01000099.1| GENE 14 15566 - 16273 630 235 aa, chain + ## HITS:1 COG:L176579 KEGG:ns NR:ns ## COG: L176579 COG1556 # Protein_GI_number: 15673717 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 235 7 227 227 164 38.0 9e-41 MIDHSNREDFLNAIAEKAGRPRHQLKDHPFVPLNDLPETTLSGHSQDELEAIAKQNSEAV HVTFETTTKAELADTLNAYIEHDAPKTLILPTTEQYHDYGLDEWKQTVTPKPMYWTPGKG RDFNLKQAAAADVAIGFADYLLAESGTVTVATTPGQGRGFHFLPTHYLAIVKKSNILPRS RQAMDRYDAAMKAGQLETSNINFITGPSNSGDIEMTLVVGVHGPLDMTYLVVEDM >gi|225002480|gb|ACIZ01000099.1| GENE 15 16771 - 17334 531 187 aa, chain + ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 185 1 185 185 219 60.0 2e-57 MTEAIDLKAGMVFVKDGKLIKVLESNHHKPGKGNTVMQMKLYDVRSGANVTTTMRPSEKI EIAIMDRKKATYLYTQDDTAYFMDSDSYEQYELPTSSIEHELKFMLPNIPVEIEFYGDEV IGLELPGTVELKVTDTQPSVKGGTVAGGGKPATLETGLVVTVPDFVKAGENILVTTDTGA YKGRAQK >gi|225002480|gb|ACIZ01000099.1| GENE 16 17500 - 18627 686 375 aa, chain + ## HITS:1 COG:L184516 KEGG:ns NR:ns ## COG: L184516 COG0477 # Protein_GI_number: 15672362 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 15 304 4 291 467 165 35.0 2e-40 MRKGVGALAMARVQRIKILIVLGLMSLLTALSGSSTNLAMPKISEDLMISSSAATWIVSI GLITTAVLLVMFGHIGDLVSKNLVFLLGEVVFIVGSLLTGIAPTYFTIMAGRVVQAVGSA MIMANSMGIISEYFPDATRAEALAVISMFISIGSISGPAFGGILITWASWRWIYLFNVPV GIFIVLAGMRVLPLRRPEPGEIKRVWQQANWTGQNLFTGGMILMFASGYWLQQPTQFWLG TGVLAGGIFLTVLAFVQDQQARSPWIAPVIMHNADYLISVSVLLIVMLVNSVSNILLPFY LQSYGGNLSIFKRVTDDATKCHDVGDHAICRLVGRSLESVLFNDFRLISVNHLASRICQL SSQNHYGTDYLADYG >gi|225002480|gb|ACIZ01000099.1| GENE 17 18449 - 18964 317 171 aa, chain + ## HITS:1 COG:L184516 KEGG:ns NR:ns ## COG: L184516 COG0477 # Protein_GI_number: 15672362 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 159 304 467 467 75 31.0 5e-14 MLQSVTMLVITPFAGWLADHWNRYYLTILGLLVLIISQVGYANYPVRITMAPIIWPIMAN GAGMALFLSPNNALTMGAVDDKLSGVAGSLNSLARTVGLTIGISFGATLLFAQLPGVTRI SAQSGAPFLHALATVFWLATLVSVVGLIIVIIRSLRKRQANAVLTKNKHVL >gi|225002480|gb|ACIZ01000099.1| GENE 18 19362 - 20981 1397 539 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 23 527 36 545 559 367 42.0 1e-101 MKFRKTMVAGTAIALAGVLAACGSNASSSKGTSITRMESDVISTMDPSTNTDAIAGQALI DTMDGLYRYSGSDLKPAIAKSEPKVTDGGKTYTFKLRNAKWSNGDAVTAQDFVFAWRRTV DPKTKSQYAYLYSGVKNADDITAGKKAASTLGVTAVNKTTLKVTLDHAIPYFKTMLVNPA FFPQNEKFVEKVGKKYGTTSKYLLSNGPYELKDWNGTGNSWKEKKNKTYWNAKNVHIDTI NGQVVKDPQTALNLYQSNKLDIAQLSGEQAAQAKTMSGYTPLKQSATFYLELNEKKDPIF KNTKIRQAVSMAINRQEYIKKVLNDSSIAANNVTPQGLFAKNGQDFSKAATKAESSTVKY DPAKAKQLWTEGLKETGQTNPTLELLTDDTTNAKRSAEYIQSTLQQNLPGLKVTIATVPF KTRLSRSQNGQFDMVISAWSADFPDAITFLDLFTSDNSYNDGKWANSEYDALIKQSKTTD ATNATARWNTLLKAQELLTKEQGVVPLYQRVQTTLQRKTITGLKYNPTNSYDFVNAKVK >gi|225002480|gb|ACIZ01000099.1| GENE 19 21163 - 22086 755 307 aa, chain + ## HITS:1 COG:lin2299 KEGG:ns NR:ns ## COG: lin2299 COG0601 # Protein_GI_number: 16801363 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 1 304 1 306 309 322 54.0 8e-88 MVKYILKRIGFLLLTLFLVASITFFLMKALPGTPFNNPKIPADQLEILKRQYGLDKPVWI QYLTYMVGITHGDFGMSYQFPGQTVSNLIVSRLGPSLQIGAQAMVLGTLIGIVLGAIAAI RKNTAVDAEATIFAILGRSIPNFVFAALLQLFAYKTGAFPVALWGGFSYSILPTIALAIA PLAQTARFMRTEMVDVLSSDYIELARSKGESRWQVVAKHALRNSMIPIVTIIGPMAVDLM VGSLVVENIFAIPGIGEQFVKSITTNDYPVIMGLTILYSAMLTVVILVVDILYGFIDPRI RLSGEAN >gi|225002480|gb|ACIZ01000099.1| GENE 20 22086 - 23084 923 332 aa, chain + ## HITS:1 COG:lin2298 KEGG:ns NR:ns ## COG: lin2298 COG1173 # Protein_GI_number: 16801362 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 1 329 1 341 344 327 54.0 1e-89 MATTKLSPEAFKHVKVNAAEQERIATPALTFTQDAIRRLKKNKAAVISLWVLIIIGVISI VSIWLSPANPNKQSLNYSNLPPKWPGIDLPGLNGYMNGQNKYAGMGKNVYFLLGTDYLGR DLLSRIMVGTRVSLFIGIVATFFDLTIGVFYGIISGWRGGLTDTLMQRVIEIISSVPNLV VVILMLLVFKPGMTSIILAIALTGWVTMARLIRAQTLQLKDQEFVLAARTLGESSIKIAF KHLIPNLSSIIIIQTMFTIPTAIFFEAFLSYIGIGLPAPTASLGTLLSDGQKNLQVLPYQ LLYPAIVIVILMLAFNLLADGLRDAFDPRSEH >gi|225002480|gb|ACIZ01000099.1| GENE 21 23096 - 24148 1129 350 aa, chain + ## HITS:1 COG:lin2297 KEGG:ns NR:ns ## COG: lin2297 COG0444 # Protein_GI_number: 16801361 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Listeria innocua # 1 350 1 351 358 471 68.0 1e-133 MSKILEVKDLQIDFATYAGPVHAIRNVSFDLNKGETLAIVGESGSGKSVTVRTVMGLLAP NAKITNGEVLFDGGDILKKSEKQLNAMRGNDVAMIFQDPMTSLDPTMTIGKQVAEPLLLH NKMSKADALKEAERVLELVGIKGAGSRLKDYPHQFSGGQRQRIVIAIAIINHPQILLADE PTTALDVTIQAQIIHMLKEIQSKIDTSIIFITHDLGVVAGIADRVAVMYAGKIVEYGTVD EIFYNAQHPYTWGLLEAMPTLETKTDRLYAIPGTPPDLLDPPKGDAFAPRNPYAMAIDLE EEPPFFKISPTHAAATWLLAPGAPKVELPPEIARRHALWASKHPDEKAVN >gi|225002480|gb|ACIZ01000099.1| GENE 22 24150 - 25133 503 327 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 10 267 278 529 563 198 41 1e-49 MADSQKKKVLVSVKHLVQTFNAGKKDEVKAIQDISFDIYEGETLGLVGESGSGKTTTGRA IIRLYDPTSGEILYNGQDIAKLKNGSKQMLDFRRNTQMIFQDPYASLNPRMKVKDIIAEG IDIHHLAKDRADRDHQVEALLDEVGLNADHATRYPHEFSGGQRQRIGIARALAVQPKFII ADEPISALDVSIQAQVVNLLKDIQDRQGLTYLFIAHDLSMVKYISDRIAVMHYGRLVELA SAEEVYTHPLHPYTKSLLSAIPVPDPDIERQRVPIPYDASKVEGDNKQRKMVEVYPDHFI FAADDEVAAYKAEAQEDHKAPAGTAAE >gi|225002480|gb|ACIZ01000099.1| GENE 23 25379 - 26017 624 212 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 3 200 2 198 206 95 33.0 9e-20 MTKFYFVRHGQTETNLARRFNGGRTDTPLTPAGRAGAEAVGRYFATTGFAGIYASPMPRA QTTAELIVAQSKVAQPAIVTVRDLREVDLGDWDGQPLASVQDDPQIDNYYHHLAEFDYKR IGAESFAEALNRGRHAIAGIYQQHPDGKVLVVAHGLLGMLLMSTYLGAELDDARDEMTMP PNNSISELDTDDGEQFTRGTLWAFVPSEYQTK >gi|225002480|gb|ACIZ01000099.1| GENE 24 26265 - 26576 432 103 aa, chain + ## HITS:1 COG:no KEGG:LGG_02060 NR:ns ## KEGG: LGG_02060 # Name: bcnIC # Def: XRE family transcriptional regulator # Organism: L.rhamnosus # Pathway: not_defined # 1 103 1 103 103 175 100.0 4e-43 MLDNIGKLVHQQRRSMNLTIEKLAERSGVSVSLISRMERGDVNNISVKKLTDIARALDMQ VGDFFIAPEMSDINTLALVKYLTRLPENERAHVSEVLMQVINL >gi|225002480|gb|ACIZ01000099.1| GENE 25 26857 - 27081 356 74 aa, chain + ## HITS:1 COG:no KEGG:LGG_02059 NR:ns ## KEGG: LGG_02059 # Name: yiaA # Def: methionyl-tRNA synthetase # Organism: L.rhamnosus # Pathway: not_defined # 1 74 1 74 74 141 98.0 6e-33 MTFEAVLPALKEGKRAVRTGWEGTELYVQLVPEGKFEGDTLNPYFLIKTADEAFSLWSPT DCDILAEDWQLVDA >gi|225002480|gb|ACIZ01000099.1| GENE 26 27078 - 27791 258 237 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 9 232 4 238 242 103 32 3e-21 MNQFDFSGQTVVVTGAASGIGAAQAAAFKAAGAQVIGVDLQPMTGVTVAIQADVSDPETG KKLAADYTPDIVCNTAGILDGYKTVAETDLATWQHILNVDLTSQFLMIKALLPEMLARGH GVFVNMSSIAGIVGGGGGVAYTAAKHAVIGLTKQLDLDYAAQGIRANALAPGAINTPMNA ADFAGDGKMAAWVAKETPAKRWAKPEEVAQLTLFLASDAADYIHGTVIPIDGGWLEK >gi|225002480|gb|ACIZ01000099.1| GENE 27 27908 - 28408 444 166 aa, chain + ## HITS:1 COG:L2611 KEGG:ns NR:ns ## COG: L2611 COG4708 # Protein_GI_number: 15672777 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 18 166 34 190 190 84 41.0 6e-17 MQTTSMTHRSIVSLAKTAIVAAIYVVMTLMLSPLSFGIVQVRFSEMLNYTALFNRRYVWA VTLGVFLANLASPTAILDVPIGTIGTLAFILLSRWLAKFVHQKWAKFAIMGVLFALSMFT VAGELVVLSKVPFWPTYGTIALGEALSMAVGGAVMMVLTRFVDLDK >gi|225002480|gb|ACIZ01000099.1| GENE 28 28757 - 29482 765 241 aa, chain - ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 37 234 405 600 605 115 32.0 7e-26 MKKKSGLRLRDIILCIALGLVIAGVGGYFYFRHFQSEQAIAVNQQTRQKIKKDSKAKVKK EKVLNQYRLYGLTDSEISAAKTLSVTAIGDSVMLGSSAYLTVLFPQMSIDAEVGRQVQAA PAIIDQLKSSGKLKDTVVISLGTNGPMTEADIDGILDQLGSNRQVFWVTAYAPGKAWIDP VNKLIHAAAKTHANLHVVDWYYLAGGNDDWFADDGVHPNDAGRVHYYTLIAKDVMKTLDK K >gi|225002480|gb|ACIZ01000099.1| GENE 29 29823 - 30737 459 304 aa, chain + ## HITS:1 COG:BH3669 KEGG:ns NR:ns ## COG: BH3669 COG3944 # Protein_GI_number: 15616231 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus halodurans # 1 269 1 224 232 102 31.0 9e-22 MNEQINLSQLWDVLKKSFIAMILLGLIGMAVAYFGTKMLVAPKYQSSTSMLVNRKQDNNP NMQLNAQQADIQLINTYKDIITRPLVLKTVSKNLTSPQKVKVQKAEKAVYGTRYNSITGV QEKYLVKKEQPAKYKLEPAKYDNLTESDIASKVTVSSSQNSQVFTISVTDTSPTRARDIA NEIARVFKTKIATIMSISNVSIVSDALANPNPVSPKLKFLAVLGFVAGIVIAYGWGLIRE LTDTTVKDIDFITDDLGLVNLGIVNYVQKMKSMDEAIRQKQNADEPDSVGFEPEGYPQRS RRRV >gi|225002480|gb|ACIZ01000099.1| GENE 30 30756 - 31508 240 250 aa, chain + ## HITS:1 COG:BH3668 KEGG:ns NR:ns ## COG: BH3668 COG0489 # Protein_GI_number: 15616230 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 19 241 8 231 235 189 48.0 4e-48 MTLKFKKLFSHNHVDQETQKNGVFLVTFAEPKHVVSEQFRTVRTNIEFAGAALDKCQVIM FTSSAMSEGKSTVSANVAVTWAQAGKKVLLVDADLRRPTVHATFRKLNLDGVTTVLTGKT KPDEVVEDTFVDNLSVITSGPIPPNPSELLNSKRMGQLLDWTREKFDIIVLDAPPVLAVS DVQVLVPRSDGVVVVANMGKTLKGDLKRTVEVLKLAKAKILGSVERVKARRGDKGYGYGY GYGYTTENQR >gi|225002480|gb|ACIZ01000099.1| GENE 31 31644 - 32651 20 335 aa, chain + ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 1 274 1 270 328 80 22.0 3e-15 MSGTSVSVIVPVFNDQENLENVLSDLRNQTYRDFLVYFIDDGSTDKSASLIKRATLRDKR FFLFSLKENSGQAKARKYGLNKVVTPFVTFLDADDRVNSQWLEKMVEPLFRGTDISVIGY DMVITGLNPKVRNGPIDRSEVLHGHDQIMTEWLLDKQLQGFLWNKMFRTEILRKSTNEFT FNWLEDVAWINSIISHVECVTINNSIQYHYVQASGSSMHRRLNANDRQSYLVLSRQFKQF SLKGSGKIKDLVDFRLVETGLMFFAQISFRDVFRVKKEKEVFLGAVRSLIEKPKSLHRFS AVTIIFLKIIATTNLVVSMTRLRLRLLRIRDAIRY >gi|225002480|gb|ACIZ01000099.1| GENE 32 32689 - 33909 333 406 aa, chain + ## HITS:1 COG:no KEGG:lp_1185 NR:ns ## KEGG: lp_1185 # Name: cps1I # Def: polysaccharide polymerase # Organism: L.plantarum # Pathway: not_defined # 8 356 18 359 388 77 23.0 7e-13 MLMKVDRKTKWFSFSFAIYVFITTIVQTSNYSSVLKDASSIAFSVQILLVISMFLTILAA AKYKLSYIISLFVFGTLFSVIALTSTYYSIMLTILAIFVGYFIRNIDVLVSYSFRSRLIA TIIIITSHFMGIISTTLIERDGSIRDSLGFFHPNTLGITLLFLSIEYVFLRWNTWRARNY LFPICCFLISHFVANSRGATVGLLLLLAFSFVKKLVSPRSFSIFGFLIVCFLIVLLPAFS IWMMTKYDASNSLFSALDRLSSLRFSFGNAIYKAYGLNLLGQNIPTIVTWEDFQAINGYG IVELDNMYMSLALRNGLLYFISFLSVYFFTSWLAFKQKDTRVLVIMVVLLVFGMFEVLGA YLQFNTMFFMLGYLIKNRQSSLIFSKKETRDVGSVNLDFNEVRENV >gi|225002480|gb|ACIZ01000099.1| GENE 33 33902 - 34891 312 329 aa, chain + ## HITS:1 COG:all2288 KEGG:ns NR:ns ## COG: all2288 COG0463 # Protein_GI_number: 17229780 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 10 100 3 89 343 81 46.0 2e-15 MFNHRAEPILSVIVPVYNATNTLPRLIRSIYAQDYLDLTEIIFIDDGSTDGSVSIIEEMF SQGRAQMTILRQPNLKQAKARNHGLKYAKGKYALFIDSDDELPGNTFKNYIDTITQKCPE FIFGLCLKEYTNGTTQVESPFSLALQDRKQLINSYLTKNNESDVLLSNKCFSLKKIHSLN LNFSNGNFFEDSLFVFKFILTLDLHKVAKINTVTYVLHKNDGSTTRSFHPEILKRAENYI YRVCQLLKKYNLYSDDVFNGFENRTYLRVAHHNLQFNPSWTRKGQIQFNRRYFHYKDLRL LPRKYIFALLCLRFLPKLYRRLYLNRMGN >gi|225002480|gb|ACIZ01000099.1| GENE 34 35469 - 35972 -23 167 aa, chain + ## HITS:1 COG:STM3719 KEGG:ns NR:ns ## COG: STM3719 COG0438 # Protein_GI_number: 16767004 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Salmonella typhimurium LT2 # 4 160 193 351 359 145 44.0 3e-35 MLTGQKNLKEMFLGLANLNLDWQLDLIGDGSKSEIKSIESFIQQLNIGKRVNLRGWSASP WDLVINPTAILLTSKYEGFGMTLAEACARGIPCISSDCPVGPRDIITNGVNGFLYPPGDI DRLSKALNKIVIEKDSFGYSTIANSIKKYYPKQYFRNLKNVFKNILG >gi|225002480|gb|ACIZ01000099.1| GENE 35 36684 - 37007 105 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229553154|ref|ZP_04441879.1| ## NR: gi|229553154|ref|ZP_04441879.1| possible cell wall biosynthesis glycosyltransferase [Lactobacillus rhamnosus LMS2-1] # 1 107 224 330 330 205 100.0 8e-52 MNDPSAQSCVDLFTVVKQAQTTLGKIPASKKSSRNFLLTNAYTAMMRTYEGRSDSDEKRK IRKEIQTYYLHLKVDKFDLRSLKTLLIKGMIMMRVYDSIQRKRGRIQ >gi|225002480|gb|ACIZ01000099.1| GENE 36 37022 - 38098 248 358 aa, chain + ## HITS:1 COG:BS_yxaB KEGG:ns NR:ns ## COG: BS_yxaB COG5039 # Protein_GI_number: 16081055 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Exopolysaccharide biosynthesis protein # Organism: Bacillus subtilis # 25 303 28 296 317 122 31.0 1e-27 MKKVERVFEVVTVIYRLLINKILGKKSILFFGVPTYGNVGDIAIALASESLIRENTKKGE LIIINDSISVITARLIRWFVSSTDCIIFQGGGNMGSIYTGIESERESVFSQFSNIQMLKL QFPSSINFKELRKKELARVQSIYSDVEIFAREYVSFEKAKEMKLGKLHLSPDIVFFLADS TCRQDSRSNVAAEKIFKKVLIIRRNDEERLENSAFDEIIKTIKSDNNLTVGFTDTVIELP SLSVRTDKKRKKIFQDKISEINKADIVLTDRLHGMILSLISGVPVVAFDNSTHKIQSTCK HWLSEYSNVYLHESEQSISLSKLKVWYSQTNGYPPNLKESFADLQELVNDRTESYEAK >gi|225002480|gb|ACIZ01000099.1| GENE 37 38337 - 39584 412 415 aa, chain + ## HITS:1 COG:no KEGG:lp_1205 NR:ns ## KEGG: lp_1205 # Name: cps2I # Def: transporter # Organism: L.plantarum # Pathway: not_defined # 1 351 86 438 516 164 30.0 9e-39 MRIYRTIYLFVGFAIVMIGMIILPLLPALTKTYTGELNVQILFVLYLLNVALTYFMGYKT SILNADQLGYIVSNSFAVMLIVQSLFQIALLVIFQSFYAYLIVAIAATILQNIYIWHVVN NRYPYVAHIKRIASFKDLRSVMDYVKPLLVYQISGVINTSTDSIVISQWLNISITGFYSN YMMILNALLALVTSLITSVTATIGNIVYSRSEHLFLTFKRLFSVSAGIATFVSICVSALL RPFIEVWLGHQYAFGWQVSALFATNLYVTILGLPLLVFREATGSFIHRQYIPVVSVFLNL GFSILLVNKIGVAGVIVGTLFGRLMTYTWNDPSIIFKYHFKKSSRKFIISLFSEIFVMAA LFSVTSWITSLIIHYSFAKFLGVMIVMIILSAFFAILRVLRVISFEDLLHGRIFK >gi|225002480|gb|ACIZ01000099.1| GENE 38 39637 - 40419 300 260 aa, chain + ## HITS:1 COG:no KEGG:LGG_02048 NR:ns ## KEGG: LGG_02048 # Name: welJ # Def: glycosyl transferase, alpha-1,3-galactosyltransferase # Organism: L.rhamnosus # Pathway: not_defined # 1 259 5 260 265 260 49.0 3e-68 MLVASHKNCRIPEDLSVYTPILVGSAFHEGTPVGFIRDDQGDNISDKNPRYNELTALYWG WKNLSSDYVGLVQYRRYFVSGRIKGTDKFKNILTRTDLEKLVAGNKIIVPKKRHYYIETI ESHYLHSHSADGMKALKVIFSKMPKNYRLALNHVLSSKSAHMFNMFIMERSEFSAYSSWL FDVLFKVEKELNYEQLQGNEKRALGFLSEIMLDVWLTANDKVYKEVPVSFMEKQHWVKKI SIFLLNKISGGRWRLNTHIK >gi|225002480|gb|ACIZ01000099.1| GENE 39 40858 - 41283 216 141 aa, chain + ## HITS:1 COG:CAC3059 KEGG:ns NR:ns ## COG: CAC3059 COG2148 # Protein_GI_number: 15896310 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 1 140 85 222 223 147 51.0 8e-36 MVVNAEELLRQNPKLYERYIENNYKLPAGEDPRVTKLGSFIRKTSLDELPQFINILKGDM SMIGPRPVVESELVEYGNQVNQFLTAKPGAMGLWQASGRSAIGYPERASLEIYYVKHRTF SFDMSILFRNIISIIKRDGAF >gi|225002480|gb|ACIZ01000099.1| GENE 40 41515 - 42219 311 234 aa, chain - ## HITS:1 COG:SPy0131 KEGG:ns NR:ns ## COG: SPy0131 COG3436 # Protein_GI_number: 15674346 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 1 232 218 449 450 195 41.0 5e-50 MVLYEHADSRATEIPKHFLTGYTHYLQTDGYQVYETLDQVTRVGCLAHIHRKFFEAMGKQ STTKSAAKTGVDYCGRMFTMERKWRLLTPEQRYEKRQGQLKTEMTKFFTWCENIHVLPQS KLGRAIEYALSQREALENVLLDGRLEISNNRVERAVKELVIGLKNWPFSTSFKGARSNGI ILSVIRSAEANGLDCRKHLEYLFTELPNLPVPGDVEALQDYLPWSPKVKANCSR >gi|225002480|gb|ACIZ01000099.1| GENE 41 42486 - 43019 174 177 aa, chain - ## HITS:1 COG:SPy0131 KEGG:ns NR:ns ## COG: SPy0131 COG3436 # Protein_GI_number: 15674346 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 51 159 7 110 450 72 40.0 4e-13 MPAEAAVMQAQFDYLKQENELLREQVAFLMRRLYGAKRESLTDGQLDLFEKNKAFTAPEP TEPEAAGKMPAKRKKRKGRKAAQLANFPEVPVHHELTDAERQCPNCTAEMREIGVTVISR EPVRIPTHVEVHVHYQHAYECRQCSDQLDHSVIKKASLPHGRSLPIVLPHPASLLRR >gi|225002480|gb|ACIZ01000099.1| GENE 42 43121 - 43474 296 117 aa, chain - ## HITS:1 COG:SPy0133 KEGG:ns NR:ns ## COG: SPy0133 COG3436 # Protein_GI_number: 15674347 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 8 102 9 103 116 112 49.0 2e-25 MIPDLSKANIYIICSRTDLRRGIDGLAALVTEEYQMDVFDNALFIFCGTRKDQFKALYWT KSGFLLLYKRFENGYMQWPRDRSEIRRLNYRQMSRLVSGLAIEERRTIQAITPGHVY >gi|225002480|gb|ACIZ01000099.1| GENE 43 43449 - 43646 153 65 aa, chain - ## HITS:1 COG:no KEGG:LSEI_1102 NR:ns ## KEGG: LSEI_1102 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 64 1 64 65 98 79.0 8e-20 MSQPNDMVPVKMVNRDGASVVVKPKLGAKVKLDDAEVLFYNGADKVMARIILQELMKHDS RSVQG >gi|225002480|gb|ACIZ01000099.1| GENE 44 43818 - 44711 694 297 aa, chain - ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 1 294 2 309 338 175 34.0 9e-44 MKKILVRVLLVVLVAALGFGGFVYYMVHNSTSQIYSYNKKTNKSSDDKTTSKKPVAYLLL GTDTGELGRSYKGRTDTMIVMVLNPKSKTTTMVSVPRDTKVDFDDVTIKINAAYSYGSSD TAMEAVEKLLNIKLDGYLLVNMKGLEQMVDAVGGVTVTSPLSFDYEGKSFVKGQSYDLNG SDALKFSRMRYDDPQGDYGRQMRQQLILTSVIGKLKKNPTTVLSQKFLDAIGKNVRTDVS LASVKNLATDYRDAGNTIKSDQLHGTGQNIDGQDYEVMSDNELTRAHDVIQNALDAK >gi|225002480|gb|ACIZ01000099.1| GENE 45 44868 - 45632 675 254 aa, chain + ## HITS:1 COG:BH3667 KEGG:ns NR:ns ## COG: BH3667 COG4464 # Protein_GI_number: 15616229 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus halodurans # 1 238 1 238 255 217 44.0 2e-56 MIDVHCHMLPGIDDGSKDLTTSLELAQAAVADGITHALMTPHHMNGRYTNHAADVIRMTD EFQDELDRRNIPLTVFPCQEVRINGQLLEAIDHNDILTCDVSGHYVLIEFPSDDVPLYTQ NMLFEVMQRGMIPVIVHPERNTRLMKHPGLLYQMIQRGALAQVTASSYVGTFGKKVQQFS EDIINAGLAHVFASDAHHLPGRNYEMKDAFKRLIRKGGEEKAGIFQENARSLVNGDPVTR FNERKIEKRIFSRY >gi|225002480|gb|ACIZ01000099.1| GENE 46 45635 - 46753 675 372 aa, chain - ## HITS:1 COG:glf KEGG:ns NR:ns ## COG: glf COG0562 # Protein_GI_number: 16129976 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Escherichia coli K12 # 4 366 5 362 367 418 57.0 1e-117 MKILIVGAGLFGGVCAHELAKFGHQITVIEKRDHVAGNIYTKEIEGIQVHEYGAHIFHTV NSDIWNYVQQFATFNRYTNEVVANYNGKLYNLPFNMNTFYQMWGVTTPAQAQAKIAEQRR VLSGKQPENLEEQAISLVGTDIYNKLIKDYTTKQWGREPSKLPSFIIRRLPVRFTFDNNY FNDPYQGIPIGGYTQIVKKMLDLPNIQTKLNTDFFDAKDFYMHNFDHVIFTGMIDQFFNY RFGELTYRSLHFETELKNIPNYQGNAVINYTDLATPFTRIIEHKWFEFGGKNKSQTIITK EFPQKWERGVEPYYPVNDSENNHLFTKYSDYAKKNAPNVTFGGRLGLYRYYNMDQVIAAA LQYISHSPLTKK >gi|225002480|gb|ACIZ01000099.1| GENE 47 46969 - 47118 85 49 aa, chain + ## HITS:1 COG:no KEGG:LGG_02036 NR:ns ## KEGG: LGG_02036 # Name: wzb # Def: capsular polysaccharide biosynthesis protein # Organism: L.rhamnosus # Pathway: not_defined # 1 49 206 254 254 99 100.0 3e-20 MSAAFKRLTRKRGEKKARIFEENARALVNGDPLVRFNERKVEKRLLSRY >gi|225002480|gb|ACIZ01000099.1| GENE 48 47509 - 49659 1406 716 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 66 704 159 815 815 546 44 1e-154 MANFNDPFFNHDMDDVFNQMLQGMGKGESARYVVNGHEMTPDEFAQYRATGQLPKQGDEI PVETTGEQAVKKGGILEKLGRNLTQEAKDGLLDPVIGRDHEIQETAEILSRRTKNNPILV GDAGVGKTAVVEGLAQAIVKGNVPESIKDKQIWSIDLSNLEAGTQYRGSFEEKIQNLIKE VKAAGNVILFFDEIHQILGAGATGGEESGGKGLADIIKPALSRGEITVIGATTQDEYRNT IMKDSALARRFNDVTINEPSAADTVKILEGVKKLYEQHHHVQLPENVLKAAVDYSIQYIP QRSLPDKAIDLIDMTAAHLASKHPIVDKVELEKQIKDLNAQKDAAAKAEDFEKAANLKKE IADKQHQLEGTNNEKPVVATPNDVAAAVERLTGIPVSKLGASDIERLKGIGKRLKGKVIG QDEAVDMVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKDAIIRL DMSEYSDRTAVSKLIGTSAGYVGYNDNKNTLTEQVRRNPYSIVLLDEIEKADPQVLTLLL QVLDDGRLTDGQGNVVDFKNTVIIATSNAGFGNEALTGEKEKDEDLMKRLAPYFRPEFLN RFNGIVEFSHLTKNDLGKIVDLMLEDVNKTLAKKGITLTVTDAAKDWLIAQGYDEAMGAR PLRRVIERNIRDKVTDFYLDHLKAKKLQADLIDGAIIVSEVQPASDKPKKEASGAK >gi|225002480|gb|ACIZ01000099.1| GENE 49 50300 - 50701 329 133 aa, chain + ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 126 1 126 131 121 47.0 3e-28 MIKLYTSGSSKSSREARAWLEANGLPFQEISLSKQGISKEQILELLARSEDGVDSLVSRR SKAFQALDIDFDALSLKQAVDLLAEKPAILRRPIIVDERRLLFGFNQDSVRVFLPREVRR QKLWAALLNTSSV >gi|225002480|gb|ACIZ01000099.1| GENE 50 51002 - 52933 1645 643 aa, chain + ## HITS:1 COG:BS_fbp KEGG:ns NR:ns ## COG: BS_fbp COG3855 # Protein_GI_number: 16081071 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 7 633 39 662 671 717 57.0 0 MDLYSELTAKYQTVPAIATEIINLEAILNLPKPTEAFMSDIHGEYNAFQHVLRNGSGNVK SKIRSCFRDEMTETTLQRFAFLVYYPSERLTAIHQELQGDDLQQWYLTTFRRLIRLLAFT ATKYTRSKVRKAMAPEFVYITEELLYNDADTPDKLAYYWQIIRNLIVLEQADEWIEATCR TIQRLTVDHFHIVGDIYDRGPAPDQVVESLIKRDQRHSVDIQWGNHDILWIGGAAGSALC IANLVRISARYNNLSILEDVYGINLRHLARLAEQYYQDNPAFSPKMGRSDRPITEAERLQ ITQIHQAIAMIQFKLEGPAIKRRPEFEMDHRLLLDKLAADFSTIQLNGHTYPITNGCFAT VDPADPYRLLPEEQEVIDSLVESFTHSEKLHRHMDFLMDRGSMYLRYNRNLLLHGCVPVD EDGNFIGLTIEGTTYTGRQLFDMLEANLRLAYSQPTEKADLATDLLWYLWTGPNSPLFGK HDMTTFERYFIKDPATHAEGRNAYYHLRKDPDFIKKILREFVLDPEVGHVINGHTPVKKG TDPIMANNKMIVIDGGFSKPYQKTTGIGGYTLLDNSYGMQLVTHQPFTTKADAIANLTDI ISTRRVVETEARRRTVAETDIGTALQAEVEVLKRRLAELRNGD >gi|225002480|gb|ACIZ01000099.1| GENE 51 53037 - 53867 704 276 aa, chain + ## HITS:1 COG:CAC0848 KEGG:ns NR:ns ## COG: CAC0848 COG1284 # Protein_GI_number: 15894135 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 9 273 17 282 292 123 28.0 4e-28 MQKTMRHPVLKWLWIMAALALIAVSINMFYAPHAVAAGGATGIAILVQEVAGIQVGLTTM AVNLLMLGLAWFFLDRSTLKRILFGSFMLPLLLWITPEINLVTDRLLAIIVGSVVFAFGV GLLYQMDASSGGTTVPPLIFKKYFGLKPSIMLLITDVIVSLFNIPVSGVEAFILAVFALT ITSLVMNYVETGFDRKKAVYIMSDQLDMLKQRIRDETPHGLTVQPVVGGFSDENREMLMV VVEQSDFRHLIELIHGIDPDAFILTVAATEVHGGSI >gi|225002480|gb|ACIZ01000099.1| GENE 52 54240 - 55142 625 300 aa, chain + ## HITS:1 COG:no KEGG:LGG_02030 NR:ns ## KEGG: LGG_02030 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 300 1 300 300 403 100.0 1e-111 MFRRSLITFALVLGGLFGTTTVSHTIQSRDLAGLRTSTREKANDVSTSSDLLRATAAVTP EKVQAAAHPSWSVRSGQAVVKSSDPTPSGQTKVSQPSAVSAPATNQTASSTSSAASASNA SAGTATAGTSTAQFTVAAAPAKTASAVTNQSATQPTAQPQAQPAKPAAAYASRVLMFAGV TVPYIIGNESMDAAPMNGAATWGGQANYSNVSGQNTHFIGHNPGAFAAMLSLGIGSPITV TDAAGSPRTYHVYRLVQVSPEAVTADGQDLWNEITGTGGGQRITLQTCVGDYWRLIAFAR >gi|225002480|gb|ACIZ01000099.1| GENE 53 55294 - 56400 989 368 aa, chain - ## HITS:1 COG:SP0856 KEGG:ns NR:ns ## COG: SP0856 COG0115 # Protein_GI_number: 15900741 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Streptococcus pneumoniae TIGR4 # 26 365 1 339 340 455 65.0 1e-128 MFSKPIPVLGKFVFWQLQPTTGGMTMSVDIDWNKLGFDYMQLPYRYVAHWKDGAWDDGTL SSDPNLTLNEGSPILHYGQGAFEGLKAYRTKSGAIQLFRPDQNAHRLHNSAEKLLMPPFP EDRFIEAVKQVVAANHEYVPPYGTGATLYLRPMLIGVGPNIGVAPAKEYIFDVFAMPVGP YFKGGMVPTKFVVADQHDRAAHYGTGQAKVGGNYAASLQAGKFAHEHGYGDAIYLDPIEH KYIEEVGSANFFGISKDGKTLKTPKSPSILPSITKYSILALAHDRFGMKTEETKIAITDL DQFGEAGACGTAAVITPIASITYNDHEHVFYSETEVGPHTQAIYNELTGIQFGDVPAPDG WIVNVPVD >gi|225002480|gb|ACIZ01000099.1| GENE 54 56686 - 58749 1371 687 aa, chain + ## HITS:1 COG:SP1121 KEGG:ns NR:ns ## COG: SP1121 COG0296 # Protein_GI_number: 15900988 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Streptococcus pneumoniae TIGR4 # 6 616 4 615 642 581 49.0 1e-165 MIQGLKDWLYLFNSGQDFQSYNRFGAHEVSPSKWSFLVWAPHAQQIKVVGDFNDWRGSPL TRQGETGCWYGELAAKKGQLYKYQVVGPDGATHEKIDPYGFGFERKPGSAARLVDIPRIK WHDDSWLSKRSKWRPYAEPLAIYEVHLGSFIRDTHAGPDGGYMTYQDAIDKLIPYVKELG YTHIEFLPLMEHPLDASWGYQLMGYFAPTSRFGDPADFLRLVDAAHVAGLGIIMDWVPGH FIKNTDMLAQFDGTPTFEYTDPHRAENVRWGTWNFDLGKAQVQSFLISSAMYWLDHCHLD GLRVDAVSNMLYMDYDAGKENDRNRFGGRDNLEGIAFLKQLNTKVFAKHPDVLMMAEESS AYPKVSAPINTGGLGFNYKWNMGWMNDTLKFFEEDPVYRHSDMNLLTFSFMYMYNEQFVL PFSHDEVVHGKKSLMHKMPGDRYNQFANLRTMYVWQMTFPGKKLLFMGSEWGQFLEWRDW SELEWVDLKDPMNHKMQTFTKTLNHIYTNRPSLWQQDHEPLGIKITMADEPDVMSYIRYG KQKDDFTVVALNFVPVQKDHFRVPVPSLGTYTILLNTENLDFGGTWTKWQATLTAQLGDH YGEPAWLDVILPAMGALLIVPKKLQPLPKKLATKHHQRPAALSGKQPPLAISNQERPAIS HQRDWGTAPARTQPVKKDLIVKKHKKK >gi|225002480|gb|ACIZ01000099.1| GENE 55 58779 - 59921 952 380 aa, chain + ## HITS:1 COG:L95975 KEGG:ns NR:ns ## COG: L95975 COG0448 # Protein_GI_number: 15672679 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 1 380 1 379 380 505 64.0 1e-143 MSTEMLGIILAGGQGTRLGKLTKTTAKPSVPFGGRYRIIDFTLSNLANSGVNTAGVITQY QPLELNRHIQNGASWGLNERGAGVTILQPYASSEGEKFFEGTAHAIYQNIAYIDSYNPQY LLILSGDHIYKMDYQAMLDYHKAKKASLTVAVMPVAKDEAKRFGIMNTDDTDRIIEFEEK PAKPKSNLASMGIYIFNWPTLKQYLTESYATDGAMEDFGHDVIPAYLTHNEASYAYAFRG YWKDVGTIQSLWEANMEFLNPNNPLNIGNRNWRIFSQNEALPPMFLTKTAKVSGSMIVDG CYVAGAIEHSILSQNVKIGEGSVIKDSMIMPNAVIGKNVTVDHAIVGENAIIGDNGKVIG KPDEISVVGYGEVLGRTEKE >gi|225002480|gb|ACIZ01000099.1| GENE 56 59918 - 61087 979 389 aa, chain + ## HITS:1 COG:L97131 KEGG:ns NR:ns ## COG: L97131 COG0448 # Protein_GI_number: 15672680 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 6 377 7 374 379 241 35.0 2e-63 MRKGDLAAIIDLNEKDDQIQPLTAARPIGTLPFAGRYRLIDFPLSSLDHANVRSVAIFLP KSGRSVTDHIRSGSTWNMDQITGGVFTYPYMAGRDYEDPQLRARYFDDYLQFLRKSSAQY TIIMGTQNVANVDIDAIVAYHQAGESPVTAVYKNLPEAAMQPEDLTLDMTELGTASSVVP AAENRGHLKEGKIPAFMDIYLIGTIDLIDLLTDASEAPTFKRLPQIMREAVLQNNANAFE YTGFLAKLNTIKRYFDANMSMLEDQNYQALLYSANSIETKNKNEIPTFFSTESHVANSLL GTGDFIEGEVNHSILFRNVHIHRDALVDHSIVMQGTKIGTGSSVKYAILDKGVIIGPNLA LEGTPEEPLVFAKNQKVFQPDGQGVTARA >gi|225002480|gb|ACIZ01000099.1| GENE 57 61080 - 62525 1271 481 aa, chain + ## HITS:1 COG:SP1124 KEGG:ns NR:ns ## COG: SP1124 COG0297 # Protein_GI_number: 15900991 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 478 1 476 477 469 49.0 1e-132 MLKVLFTAAESAPFYKTGGLGDVTYALPKAIKKQGVDIRVAIPFYERKFPAKYLPKVKNL THFTIEIGGQPVYVGLKTIKLGDVTYYLIDNRQYFDRDGLYGYWDDGGRFGFFQMAVIEM LQVIEWIPDIIHANDWHTAFIPVLLKEKYGWIQPYQAIKTQLTIHNLQFQGWFPPSILDT VFGIGRQSFNDDGFAQDGSVNWLKGGINFADLVSTVSPSYAQEIQSPAFGEHLDGTLRKQ SGKLVGILNGIDDEVYNPATDPHLTYNYSAKDLKGKAKDKRVLQEEMHLPKRSDPLFAMV SRLTRQKGADLLVDALENFLVQNNVQVVILGTGDRDLEEDLLSLQDRFPGQLAVRIDFDE ALAQRIYAGADYFMMPSAFEPSGLAQMMAMRYGTLPIVHETGGLRDSVTPYNAETGAGTG FSFWDYNAGVLAKILCMAKHVYSDEPKVYARLQQQAMAMDFDWHHSAAAYLKGYNRILGK A >gi|225002480|gb|ACIZ01000099.1| GENE 58 62673 - 65084 2242 803 aa, chain + ## HITS:1 COG:L99884 KEGG:ns NR:ns ## COG: L99884 COG0058 # Protein_GI_number: 15672682 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Lactococcus lactis # 1 791 1 795 800 843 52.0 0 MALTKEQFIADFKDMALKMYAAPLEDLSSQQLYQALALLTRTYIAQPWADTKKRYDQEET KQVYYFSIEFLPGRLLQSNLLNLGILDAVEAGLHALELHPQKIFDAEADPGLGNGGLGRL ASAFMDAMASVGMAGNGNGIRYQYGLFKQAFVNGYQVELPDDWMRNGFPWETRKENRAVT IKFGGWVELKPSRSGNLRVIYHQTDDVLAVPYDVAMVGYHNGVVNNLRLWSAEAPINAGS RFTLEQKERINQITQILYPDDSDNAGKELRLRQEYFFTSAGIQSIVRHYRRTHNSMAGFA DRVAIHINDTHPAMAIPELMRVLMDDEHVSWNEAWRITLKVMSYTNHTLLSEALEVWPID MFSGLLPRIYQIVQEIDRRFRLAFVPQFGQAMIDRIAPLGNGQVRMAYLATIGSHAINGV APIHSELLKKDVLHDLFQIFPERFNNKTNGITPRRWIQIGDRPLAHLLDKKIGTTWRKNP LALRKLHDFSDDPHFLSDLNAAKAENKRALAKYIDQTVHVKVDPDAIFDVQIKRLHAYKR QLLHVLGILDAYLALKSGEKRPKRLHIFGAKAAPSYVYAKEIIKVMNAVADMVNGDPEVS PYLQVVFLPNYGVTMAEKIIPAADISEQISTAGKEASGTSNMKLMSAGALTLATLDGANI EIKNAAGDDNIEIFGLTEDEIAGYYQRGDYRARDFYEKDPRLHAVLDMLVNGQIPGIETE GRDIFNSLLTYNDEYFVLADFESYLAANAKLDALYQQPQAWAKKALVNIAESGRFSADFT VQRYGRDIWHVVPQTPEDDGSGN >gi|225002480|gb|ACIZ01000099.1| GENE 59 65106 - 66884 1120 592 aa, chain + ## HITS:1 COG:L102412 KEGG:ns NR:ns ## COG: L102412 COG0366 # Protein_GI_number: 15672683 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 10 554 12 556 600 537 48.0 1e-152 MFQFDSFTDRQPFGAVRKATTIHFTAKADGAVTQASLIIMPDGRGDQTETLPMTKSPNGY TVSFAPQTAGLWFYHFELQTDEGRQRFGAVDGGFGGIGQVYPENADVNSYQLTVVNEFDP VPEWYRHARFYHIFVDRFNNGNADGHVNAPKANSFIYGRQSDRPMYIRGTNGEVLRWDFY GGNLTGIQQKLPLLAARGINALYLSPIFQARSNHRYDTGDYYAIDEVLGTLHDFKQFLAA AHQLGMHVILDGVFNHVGADSRYFNAVNEYDDVGAANSLDSPYASWFSFKRFPDDYNSWW GVKDLPAINKDNQDFHNFIAAKKDSVISYWTDLGVDGWRLDVADELTDDFIHQIRTTLDQ FPDRVLIGEVWEDASNKQAYGKRRQYFEGGELNAVMNYPLRSMLIDFVNGQLSAAGFVRQ LMTLKENYPPNAFAFNFNNIGTHDTARILTVLNGDRRKLQLIVSLLYWLPGVPCLYYGDE AGLTGGKDPDNRAFYPWGHEDQAILDMYQIALQTRIDQPALAADAAFFPFTFEDSLGFVR QNEAQTLVVLANPTCSPQVLQDPNAKLVPANLRSLLPMGTMVPPGSVIWQAI >gi|225002480|gb|ACIZ01000099.1| GENE 60 66998 - 67927 878 309 aa, chain - ## HITS:1 COG:lin2785 KEGG:ns NR:ns ## COG: lin2785 COG1477 # Protein_GI_number: 16801846 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Listeria innocua # 10 308 49 349 360 219 39.0 6e-57 MTTTTTFHGLGADNTLTVYADGANELLNQSVSMIQAYAHLLSLYDDESLLTMINAQAGKT PVHIPVRPVFNLIAQAVAWSKRGLGYNALIGPIVKLWRIGFADARVPSANEVNAALALTD PNLVELDSENQTVFLPKEGMVLDLGGIAKGFIVDQVYDLWDKTGVEGGLIDLGGNQRLVG KAASGIPLWQWPIADPRHPGQRSIATLTTEPKAVVTTGIFERHSEIAGKEYHHLIDPNTG YPVESNMASITVIADNGLIGDVLSSVGFYAGVPAGYDAIEAEGQEAIFVTKDTRVYQTSG LRETLAVTM >gi|225002480|gb|ACIZ01000099.1| GENE 61 68078 - 68413 364 111 aa, chain + ## HITS:1 COG:no KEGG:LC705_02020 NR:ns ## KEGG: LC705_02020 # Name: not_defined # Def: ArsR family transcriptional regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 111 1 111 111 194 100.0 1e-48 MAAYSSAQQEALKEFKQDIGHLNALSNSSRQKLIMILGAADNHVGVSVNDLADAIGLSQP ATSHHLKHLKDIGMVGSRREGNMVYYYLTLNDTIARLERLTNALKRQIAQA >gi|225002480|gb|ACIZ01000099.1| GENE 62 68588 - 69526 943 312 aa, chain + ## HITS:1 COG:L106965 KEGG:ns NR:ns ## COG: L106965 COG0053 # Protein_GI_number: 15672290 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Lactococcus lactis # 18 307 9 295 425 198 36.0 9e-51 MDAGRNILKDEQRRFARLKSAQHAAALNLVVYGGLTVAELWIAQLAHSRALAADGLNNLT GVASALILLWGLQVSQQRPDSEHRFGHWRFQTIATLFSGLIMLVVGLDVVLDGYHGLQAW YQGKVQVPGVLAVYVSLAAGVAMASVSLMNHIRAKQLDSSVLRTASKDSFSDAATSGGTL LAILGAKAGWLWLDGGAAIAVGLLILYAAWTILRDAIFELTDGFDTKKIAAYRQTITQVP GVLGVQSIEARYAGDAVLLTIGIRVDPTMTVADSYELGERVERKLMDAYDILDADVKTYP ADLPPEDAPQDP >gi|225002480|gb|ACIZ01000099.1| GENE 63 69590 - 69775 108 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDIGMTRGQNSLSCNSCYQAERFAATTVFLNAYLDNTTATQLVNFIGQILTHARYLYRGS R >gi|225002480|gb|ACIZ01000099.1| GENE 64 69932 - 71203 630 423 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 1 422 1 416 418 247 38 2e-64 MTETQRGQILDELKWRGALNQLTDEAGLRKLTEEKAVSVYCGTDPTGDSLHVGHLIPFMI LKRFQLMGHRPVILIGGGTGSIGDPSGRNSERVLQTMETIATNKKKLTAQMENLFGTDDF RIVDNYDWLSKISMLDFLRDYGKLFSVNNMLNKEVVASRLETGISYTEFTYQILQSVDFL HLFKHEDVQLQIGGADQWGNITAGIDLIHRLEGPDARAYGLTNPLMLKADGTKFGKSAGG AVWLDPEKTSPYEFYQFWFNQDDADVEKFLKFFTFLSRDEIAELVEATKTHPEKRAAQRE LARAVTKFVHGQKAVDQAESISAALFSGDVADLSADDIKQGFKQFPTVEAPQTAENIVTW LVDTTKIEPSRRQAREDIQNGAITINGTRQRDLDFEVDPSTHFDGQYVIVRRGKKRYFLV KIK >gi|225002480|gb|ACIZ01000099.1| GENE 65 71505 - 72704 1135 399 aa, chain + ## HITS:1 COG:CAC2663 KEGG:ns NR:ns ## COG: CAC2663 COG0791 # Protein_GI_number: 15895921 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 281 383 140 240 255 100 45.0 4e-21 MRLKQLVTGAITVATLAGVGVSGFAATTVHAADDKASLQAQNDDLLKQVQAANEKSAKLN NEVSNKVLAIQDAEAKIKDSQAKIADFASQLTKANQEVSKRKSNLKDQLISLQKRAGDSV TGNVYFDFILNSDSLTDLVGRSLTVSKLSQASAEALQAVKDSEAKVKNLKAAQEANQKNL VATKSQLESDKAKIDGLKADADKAAADAQQTIDANKEKLAAMAADEAAKAEAAQKAVTAV ASSTASASSTSASSSTTASSNSLGSSKAASSQAPASAGSSTVSVSGGSIAGNAAKYLGVP YVYAGTSPAGFDCSGLIYYAAKEAGISLPRTSQAQSTLGSYVSVSDLQAGDLVFWGSVGN AYHVGVYIGNGQYIHAPEPGQNVTVQSVAYFAPSFGRRL >gi|225002480|gb|ACIZ01000099.1| GENE 66 73137 - 73544 545 135 aa, chain + ## HITS:1 COG:SP0256 KEGG:ns NR:ns ## COG: SP0256 COG0454 # Protein_GI_number: 15900191 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 119 1 120 138 107 47.0 6e-24 MIKIDQRQLNQADVLALYQAVGWNMYTRDPKKLERAIAQSLSVLGAYDGDQLVGLIRAVG DGETILFIQDLLVLPSYQRQGIGRQLVDALVDQFPQVRQRVLLTDDQPQTRAFYENIGFV QSSKVGVIAFYQDLT >gi|225002480|gb|ACIZ01000099.1| GENE 67 73654 - 74256 533 200 aa, chain + ## HITS:1 COG:NMA1919 KEGG:ns NR:ns ## COG: NMA1919 COG0194 # Protein_GI_number: 15794804 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Neisseria meningitidis Z2491 # 7 188 9 190 205 77 32.0 1e-14 MKAAHKLIVITGATGTGKTTVSAYLRDNYRIHRVMTHTTRPPRTGEQNGVDYYFETPASF ATKHFIEKVTYAGYEYGSSHESLEKNWAKHPFLSIVLDTKGAITYVRELPKEVVVLFLTI DDPTVLKDRLLGRGDEPNMVAARLKSPEYKRDLTLPDELKPFATVIKNDRWDEARQQIDR FMKDLALKSCGFLSVDTEQK >gi|225002480|gb|ACIZ01000099.1| GENE 68 74458 - 74571 91 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAEKTDYASAARRLKSKNPKTRSRAKRVIKAVKKTTK >gi|225002480|gb|ACIZ01000099.1| GENE 69 74680 - 75132 187 150 aa, chain + ## HITS:1 COG:lin1483 KEGG:ns NR:ns ## COG: lin1483 COG0735 # Protein_GI_number: 16800551 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Listeria innocua # 7 138 8 137 141 107 43.0 1e-23 MDNTAIALKQLKQHGYRVTKQRESMVDYLGRNQHRYTAVTILDRYMRTQFPGVSHDTIYR NVKSFIEMGIVESRMEDDQIVVKLQCDFQHPHHHHFICTNCGKVIELKMCPLNYFEEQVP GAKIQSHNFELYGLCAACQEHADRLKNANR >gi|225002480|gb|ACIZ01000099.1| GENE 70 75389 - 75832 293 147 aa, chain + ## HITS:1 COG:no KEGG:LGG_02011 NR:ns ## KEGG: LGG_02011 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 147 1 147 147 109 95.0 2e-23 MAYRTPPLLPPTAIVSLIVLISAYNIVNTINPVNQPKSATEQSELVSKIKSESASRAAQS ASSKAEPSQTSTSQPAAASQSQVQASHPSGEKETTSTEASTSTPSASTASTVSTSTPSST TTSDDQASDQTGTDNGQETDTTSSGGQ >gi|225002480|gb|ACIZ01000099.1| GENE 71 75853 - 76812 971 319 aa, chain + ## HITS:1 COG:no KEGG:LC705_02008 NR:ns ## KEGG: LC705_02008 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 319 1 319 319 613 100.0 1e-174 MLTVIDIINRVLGYFNIADKPKGKAFTWIAFVANFYLLYIAIQNLRYPDFRIRGALFMLA FVVFLYFIALNFLYYFTNKTTRFDISPTVEKWLGSNSAKKTAAENELKTQLGAAPASGVF TQDQLLTADVTMTAEQQANLDDLVASLVKQGVLSLNYQGLDDKAISRVAQETQQPVLAIG APFPIPFFDLQHTDHELIITGGLNALMAKPLATIERVGLLPAAEAQRDYHLVAANVFLIG GEQKLLGRSGLRKEKQPYSLTVQLAYQDKTPAASEGEQPATPATLPTREEARTSVTENKA TSSAEEPPLPTRESRRHQR >gi|225002480|gb|ACIZ01000099.1| GENE 72 77120 - 77857 544 245 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 242 1 242 245 214 43 2e-54 MSMIEFHDVNKYFGKFQALKNINLTIDRGEVVTIIGPSGSGKSTVLRCINGLERITSGQL IVNDFDLADKKTDMNRIRKNVGMVFQHFNLYANKNVLQNITLGPDLVLKRDKAEVEQEAR DLLKMVGLESKADSFPGELSGGQQQRVAIARSLAMKPKAILFDEPTSALDPEMIGDVLDV MQKIAEQGMTMVVVTHEMGFARHVGNRIVFMDDGKILVDSTDVNQFFDDPQEPRAKEFIS KIINH >gi|225002480|gb|ACIZ01000099.1| GENE 73 78051 - 78875 855 274 aa, chain + ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 4 267 1 272 273 273 53.0 2e-73 MAKMWKRMLLPLVLLLLMIPLSSCGKSVADRDILTNAKATNTIIWGVKADTRLFGLMNIK TGKIEGFDVDMAKAITKQILGKKGNAQLVQVTSDTRVPMIKGGNLDAVIATMTITPERQK ILDFSDVYFNAGQSLLVKKGSPIKSVKDLKKGTKVIGVQGSNSVDNVKKAAPDTTVLQLA DYAQAFTALKSGQGDALTTDNGILYGMSEQDKNYIVTGGTFTKEPYGIAINKGQKPFVKA VNKAIKQLKQNGTYAKLIKKWFGDVPGFSLKEVE >gi|225002480|gb|ACIZ01000099.1| GENE 74 78877 - 79521 660 214 aa, chain + ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 3 210 4 211 216 215 57.0 4e-56 MWSILTNNWNTFLSGLGFTLAASILALIGSLIVGTLFALMEISPFKPLRVIGRIYVEVVR NIPLLVITLAFYVIVPQFIVKIDGFTAGTIGLLIYTSAFIAETVRAGIEAVPSGQMEGAR SIGMTYTQAMTQIIFPQAFKIVIPPLGNQFINLVKNSSVLAFVAGFDLMYQGKLIAATTF STFDTYLIVGIFYLILTMPLSYLMRYLEKKWVTA >gi|225002480|gb|ACIZ01000099.1| GENE 75 79537 - 80199 602 220 aa, chain + ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 3 215 2 216 218 204 54.0 9e-53 MQNFVDAYSWINLRYLLQGLGVTLEVSIASIFFSFVLGVILGLARYVKIKYFSAAVGFVI DVIRNLPLLLILFFTYFALPDIGIRLNVIVAAIVAMSIFESAMLAEIVRSGINAVPRGQM EAARSNGLTFYQAMRYIIMPQALKKMIPPIVSQFISLVKDTSLATIILLPEATYHAQIIY GQNINYMIPMFVALAVMYFVVNYALSLASRWLDRRLVQSN >gi|225002480|gb|ACIZ01000099.1| GENE 76 80637 - 81572 719 311 aa, chain + ## HITS:1 COG:L12335 KEGG:ns NR:ns ## COG: L12335 COG0451 # Protein_GI_number: 15672193 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 2 307 5 308 313 280 47.0 2e-75 MSSYLVTGGAGFIGSNLTELLLTDPDNTITIVDDLSMGLRTNIPDSSRITFYEHSITDHA FMSQLLMEGRFDYIVLLAAIASVADSVERPYATHQVNQEANLNIIETLRTQKIPYKKLFF ASSAAVYGDSPELPKKEDMAVKPLTQYAVDKFATERAVLNYGRLYDMPMVCTRFFNVYGP KQNPKSPYSGVLSIMMAALQEDKPFTFFGDGEQTRDFIYVGDVVHAIRGLLETPSARDDV FNVANGKQTTLNQVAKELEKLTGKTLHATHKAPRLGDIRDSYAQTDKLDQFDFMTHTPLA EGLAKYVASVQ >gi|225002480|gb|ACIZ01000099.1| GENE 77 81655 - 82410 638 251 aa, chain + ## HITS:1 COG:BH3661 KEGG:ns NR:ns ## COG: BH3661 COG0463 # Protein_GI_number: 15616223 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus halodurans # 5 242 9 246 257 211 43.0 1e-54 MGNTPVVSVVMPAYNAATYLPNTVQSVLEQSFKDLELLIVDDASSDHTFEVVEKLSATDS RITYIKLDENQGVANARNVGVQHSRGEYVAFLDSDDIWLPDKLKIQLTFMQQHQVDFSYC SYEVVDDHGTKIGERKISETKLDYHEMLKGNRIGLLTVMLSRKIAQKYPFPEINHEDYAC WLSIARNGTVAYLASEQILAKYRKHQTSLSANKIQAAQWTWTIYRRHEHLGLFKSFYYFL HYSLMGLTDKR >gi|225002480|gb|ACIZ01000099.1| GENE 78 82433 - 83173 378 246 aa, chain + ## HITS:1 COG:FN1241 KEGG:ns NR:ns ## COG: FN1241 COG3774 # Protein_GI_number: 19704576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannosyltransferase OCH1 and related enzymes # Organism: Fusobacterium nucleatum # 1 182 1 174 243 93 31.0 3e-19 MIPKIIHYAWFGTTPPPFIEARVNEWRTQLPDWEFKFWNDKNFDLSKYAFSEKMYQAGKL GYAADELRYAVLYQYGGFYLDTDMIVKKDLAPFLNQKMVWGFQYDNSILTSFIGAESKTP LLAEILDVYAGRKFPDLQDDMQKMTSNPVVTKILMRLYPDFRMNGQRQELAPKITVYPRD YFTYASRNSNANYMEHLFDNSWGSANLGMRGRLKHAFKTVFPYLWADISARRGIKSAERD GIPYQR >gi|225002480|gb|ACIZ01000099.1| GENE 79 83291 - 84691 930 466 aa, chain + ## HITS:1 COG:CAC2330 KEGG:ns NR:ns ## COG: CAC2330 COG2148 # Protein_GI_number: 15895597 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 1 449 1 448 461 251 32.0 2e-66 MKQSAEWNGFKRLLTMIGDVGLFNLSILLAFYWRFGSDIPEWNFKMYEGSAVYISLLFLL VNFFLGVYVYYNRRISDIIFNTVLAQTITILGLTMITFMGRFFAFPRLVLAYSFLLSILI LGIWRVFIYYMYIHFTSNYKVAVLSYEHELPAVLENFHSAKNNKHKVTYVVSDHFVENAK KIIDKVDIFYLTKSLPDEQRREIIDIIIKKEKTILLPSTFDNLMMLRPNLMNFEDESVMG ITQFRIKPESAILKRIFDIVVGLLMLVVASPFMLVTAILVKLSSPGPIIYKQTRITLNQK EFKILKFRTMSATAEAKSGPVLAKAHDSRITPVGKYLRKFRLDELPQIFNVLKGDMSIVG PRPERPYFVDQFNQQEPHYYLRHNVRAGITGYAQVYGKYASDYHSKLKFDLLYIKTYSIF LDARILLQTIKILFDKVSSQGLEEDTEPERQKLHDLVVQQDITHLS >gi|225002480|gb|ACIZ01000099.1| GENE 80 84938 - 85792 583 284 aa, chain + ## HITS:1 COG:no KEGG:LC705_01999 NR:ns ## KEGG: LC705_01999 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 284 1 284 284 451 100.0 1e-125 MKKLLVIVPLALLLTVAGCGQTGQNNHAKASSNVSQTNKSTKASANRESNGVNGSKKSAS LSSSNQVGSKASDSSSSKNLPEQRYAKLKKAVFNQIASAKWPSSYAVAESQYLNIFATGD QSNYSIFFSPGSVALPFNDPTLQNINAELAIQKKTYPNASDAQAQVAVSQSTASLPKVAL GDGIEATSQGAAGSTYLTWTEGRWIVTVKASAINGEDPLPLAKQVVAWFASHALPVPDQR GTVDLTVTNANVRQNQITWTEGNALYMISGLEPIKTIQEGTATR >gi|225002480|gb|ACIZ01000099.1| GENE 81 85999 - 87141 848 380 aa, chain + ## HITS:1 COG:lin2681 KEGG:ns NR:ns ## COG: lin2681 COG0381 # Protein_GI_number: 16801742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Listeria innocua # 1 379 1 377 379 474 62.0 1e-133 MAKIKVMTVFGTRPEAIKMAPVVLGLKQRSDEFEEVTVVTGQHREMLDQVLSIFHIQPSY DLNIMKSRQTLADITSNVLLKLGQIIAKEKPDIVLVHGDTTTTFAASVSAFYQQTKVGHV EAGLRTWEKYSPYPEEMNRQLTDVLSDLYFAPTEQSRTNLLKEHHPEKQIFVTGNTAIDA LDQTVRDDYHHQVLELIDPDKKMILVTMHRRENQGEPMRRVFKVMREVVETHPDIEIIYP VHLNPVVQEAADSILGHHPRIHLIAPLDVVDFHNLAARSYFIMTDSGGVQEEAPSLGKPV LVLRGTTERPEGVQAGTLKLVGTDPKTVKTAMLQLLDDDQEYQRMSEAKNPYGDGHASQR ILDAILYEFGKKATRPVAFK >gi|225002480|gb|ACIZ01000099.1| GENE 82 87212 - 88204 607 330 aa, chain + ## HITS:1 COG:lin1066 KEGG:ns NR:ns ## COG: lin1066 COG0463 # Protein_GI_number: 16800135 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Listeria innocua # 1 326 1 327 329 323 45.0 2e-88 MALPVLWIVIPCYNEEKVLPITAPRFLKKLTEFIQKKRIAQNSRVLFVDDGSKDRTWSLI QEFSQADDHFLGIQQSRNRGHQNAVLAGLMTAKDHCDVTISIDADGQDDLNAMNDMLTAY EDGCEVVYGVRSDRKSDSWFKRVSAQSFYRFLRLMGVDVVYNHADYRLASSKVLQHLADF KEVNLFLRGMFPLVGFKSTSVYYQRHERLAGKSHYSLSKMVALAINGVTSLSIKPIVFIA ELGGIVSLFGFVGTIWAVLMAFRGATVAGWASIVCIVSFMGGIQLLSLGVIGEYVGKTYL ESKHRPRFIISQQTWQSEERHTKDESEKLK >gi|225002480|gb|ACIZ01000099.1| GENE 83 88316 - 89356 412 346 aa, chain - ## HITS:1 COG:CAC1402 KEGG:ns NR:ns ## COG: CAC1402 COG3936 # Protein_GI_number: 15894681 # Func_class: G Carbohydrate transport and metabolism # Function: Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation # Organism: Clostridium acetobutylicum # 3 320 21 339 356 95 28.0 1e-19 MDLILLPFIGFIFASMRPSQNLQDGHLGKNATNNLKGISIIFIILHHINQEIGEVGGTFF SSRLTLAGRLGVAIFFFVSGYGVMRQYQIKGSTYLKNFLSHRVLPIVVLYLLAMAIIFPI KHQFMGLTLAQAVISMTDGAPFVNDSWFVLAIIFFYVVFWISLRISHGHPLPLFSCLFLL TGVYMVYIGTEGMGEWLINAALVFPVGVLFAFYEQRLVPFIRRYYLPLTLITLTIFALFF TLDEMHGQMRYRVVSEVFFALSVMMISYRVEFVSKIFLISSAWSLNLYLYHPFIADWLYS IDAIGSHSVVYTIVVISLSYLAAGIIALLQLCLQRLKSRRLSVKTV >gi|225002480|gb|ACIZ01000099.1| GENE 84 89630 - 91117 746 495 aa, chain + ## HITS:1 COG:no KEGG:LC705_01995 NR:ns ## KEGG: LC705_01995 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 368 1 368 370 657 100.0 0 MKQRVELILEDSNKFINRLARYLLVGVFIFCLLCLFKIQVVEGAAWGTPAFVLGGMGVVI TFFLLFKLSTVNLSDWQALFLLAGITIIFLGLWNYVYRTKPVSDYQVLLEGARDIVNGTF KSQAVKPSDYFRYYNFQIGYAYYLSVFMRVFGDRLLYFKIVEMVVITLTVLTLYKTLRLF SNRHVAFFGAGLFAFFPFIFIGAGIINNQHEGLLLEALAIYFVLKRRSWLNLLIAAICIA VAQVLRPTAVVVAMAILVALIIQAIQQKSRQRLGEAVLFLSCFWILGWAINQLFILSGIA PYGIKGGNPYYKFLIGLTGKGVSGKYTTSARKSQLYYDLKAYHFDYALYKDAAAEKLRNA FTHGIDIQEVMKRFTGFIGNVDNQYNLGGNQHFLDRHPLLISSLNFSGIVIYSSTVLGTF KRVLTEKRVTTRMSYLLPALVFGMFFFAYIFMETQARYRFEQYYVLFLLAVPTLYQWLVQ VQKRTFDREISDHRI >gi|225002480|gb|ACIZ01000099.1| GENE 85 91242 - 93317 1516 691 aa, chain + ## HITS:1 COG:no KEGG:LC705_01993 NR:ns ## KEGG: LC705_01993 # Name: not_defined # Def: lyzozyme M1 # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 691 1 691 691 1160 100.0 0 MGSKEKILKNKLFWASAAIASSLLFSQLVLGTPVSVSADTNESTSTQSTQNQAAAFHDMN QHSNESGAGMPNTNAANGVRTFSSAQNGDTTTQAAAQANIQTFAASPLTMMSFTIGNQSV PRTDVVDVASYQGWMTQANFNTLRSLGVKGAVVKASEGTNYQNPFAASEVQYARNAGMTV SMYHYSRFGSSADAVAEANHFANTLDKLNVGKQVNVVADVEGNDVSGDVGGNLNAFWQTL NRRGYTHHVLYTGKYYEYSNAAINTVGKSRTWIADYPYTPSANSMWNQDFGAWQYSSLAY LPGASKSIDVTVDYTGLFTQPNAVTPPAPAYDSISSTKAVSYDATIVNQNTRKDGIYTAA PYHTSATTAISNFDGVNYNNQSVHVQAEATTFRGTYVQVKAQDGKVFWIDKNGTAQFSFD KVVSNKAVNYTATIQQKGRADGIYTAGPYHTSVETSGGNSDATKYNGQKVQVIAEAVTTR AGGTTYNRVKLANGQTFWIDKRGLTTTTATGTSSYDKILTTKSVSYLAIVDQTHRADGLY QEGPYHTSAATAIGNANTKSLNGRLVQVINEATTSRPTHSTYVQIRLGNGKTYWTDKLAL TSFSSLSPILSTKSVSYSAVINQKTRTDGLYVDGPYHTSITTLGGNDNAKRFDGQQVHAS VEQKTDRGTYVKVQFANGQTYWIDKSGLTVK >gi|225002480|gb|ACIZ01000099.1| GENE 86 93512 - 95293 1069 593 aa, chain + ## HITS:1 COG:no KEGG:LC705_01992 NR:ns ## KEGG: LC705_01992 # Name: slp # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 593 1 593 593 1134 100.0 0 MQEIRGVKWKRDGLWIVGIIVMALVVLAPQINYHAMAIGDDWEFQWNRFYEAAMQIKNGH FNFFQSIYAFRQSGRVVNAVYGSAFAYLNGFILILVKTWFRAQIISSFLCLLTAGSGMYF LARYCRVKRQLAFGAAVLYMGTPLVMFYVTDTALRGWGAALLPFATIPLIRMVRNHDRPI NPVLFGLAAGSLLAVQNFTALLYVLSAVVFFIPGLYLARDRYRTLLAAGGAVAIAVGLNA ATLAALIDLHHESLVMPYRVKDLIGSASQLSLGNMTRLDFGLILSFVVVIQLVFAALSWK NLALYEKIINVDGLLFLWLSSPLFPWNVIGKHFPVIQTIQFPQRFNAVALTMIILGAVLS LQKLGRGNFMQLRLIAAAFISLAGLNLINGYTWVNEKASAWRGDQLAVSADSTIKDQSKI RDLFNHAYDQSHVFSVITKNTPDYLPVTQTGNTLFAYDAYKSQILNHPLKVVIGVNSDSQ VVYKWKAKSRKSVLIPAIVYRHSTVMLNGTLLSRSEYHRSNIGALIVTPRKGSNQVTLGY QPSRLFDIAGIINILTCLALILYGGFRIFLVNMKWLSVKGEDADSSRRRHDDI >gi|225002480|gb|ACIZ01000099.1| GENE 87 95554 - 96519 610 321 aa, chain + ## HITS:1 COG:all0914 KEGG:ns NR:ns ## COG: all0914 COG0463 # Protein_GI_number: 17228409 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 1 275 9 264 337 83 24.0 6e-16 MNYQLSIVIPVFNSEQYLPRLFKSLGEVPPEVEIILVNNGSTDNSASLLQHYHETHADTV IIDENRRGVAFARNTGLDNSNGKYVWFIDADDVLLPGAVNRILRVIKGTGFDLLVFDYLS LVEKDKVPKEAPAVKKAEKTKLADILHEMLTGAHDPIGGFPHNKVFARKLIGTERFENLQ YAEDLAFFLPILLRANNIYRLHDALYVYYQHAGSIAHKINTEKLTDYAKVVDEVERVLRS SDVAANKDVDEYILRRRLSIYFQNLAASNDLGLKRHIRDKMAQYSFKKLMLYKKDKKLVI KMLLYKFRVLDIFPFLLKYVY >gi|225002480|gb|ACIZ01000099.1| GENE 88 96572 - 97708 414 378 aa, chain + ## HITS:1 COG:no KEGG:LC705_01990 NR:ns ## KEGG: LC705_01990 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 378 1 378 378 763 100.0 0 MKILFVSTGHVDDDSRLLKESAALQAAGHDVTILGWREEPHGRMTTDTFEFDGQKLKAIF TGIKLSYSFKYFKVLAFIRFEAFLYRWLRKHLHEYDAVQACNVHTGYVTAKVVKKTKTKF VYDIFDYAPDTRNYPEWYRKMVVHWENVTMATADWTLICSEDRRRQIEPAKPKNLAVIYN SPLDSSVAADAEVINPKQTSFRIVYIGGLSPYRCLPELLGAVENNPALSLTVAGQGQFQN MFADAAKRDQRIDYLGVVPYEKVNGIEKTADILVALYDPVLKNHLYASPNKFFEAMELGK PLLMIKRSGMSNWLTKYGFGAVCEPSESGIAAGLQELVDKRQDWAKEAVLMRQIYQKEFA WPLMQQRLRRIYASFETK >gi|225002480|gb|ACIZ01000099.1| GENE 89 97789 - 99162 687 457 aa, chain + ## HITS:1 COG:no KEGG:LC705_01989 NR:ns ## KEGG: LC705_01989 # Name: not_defined # Def: polysaccharide biosynthesis protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 457 23 479 479 843 100.0 0 MASNFLLLPIIFHFLNSQEIGYWYLILSINGLIALFDFGFDPAFARNIAYIWSGAKTLKS RGVDKEHDHTVINYHLLASTIHAARAIYMILAIVAVVLVGIFGTIYMNAFVFSKLPDAEY KWTWLVFCFSLFLNLYFGYFSALLRGSGKIDSVNKAQVFSRSLQILLTFGGFLIYPSILS PVIGLVMYGIIFRTICSHFYWQDEEVRSHRDVLKSPMNWHEIKEIFLFIWPNTWRDGLVS MSNYVTSQGMSLMAGAFLPLSVTGVYSVGVQFASAIGTASSAINGAYNPILQSNFVKQDF ASIRDKTSKAVAAYVWLFLIASVGTLLVIFPLLKLIKPASVPTLEVFLPLILYYFLYQQH SVHASYIANANIIPYTKAFLISAGANLVGLWLGLELTNGNIYFLLFFPILVQAAYNNWRW PSYYYKMIDSTLLSSIKQGTIAWGKTFANFFKSGSNV >gi|225002480|gb|ACIZ01000099.1| GENE 90 99249 - 99941 522 230 aa, chain + ## HITS:1 COG:BS_ywqC KEGG:ns NR:ns ## COG: BS_ywqC COG3944 # Protein_GI_number: 16080679 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus subtilis # 1 227 1 222 248 82 31.0 6e-16 MDNLLSMKELLVSLRKNWWLALCTLLLGAVIAGGYAYGVKKPSYSSTALAVVNQQKNNTE SLSQILNQNQYDSELLATGKSLFKTAAVYDRASAQLLQKEQLKISSGDLQKQVKVDNEDN SRAFSIHATAKNANDAASIANEVAAAFQKTISSITNHTDTVTILAKAEPSDVAAGTKPLV LIVIGAIIGFLVGLAWIVLREIKQATIKTKETLIKVAKAPVLGVISTKKL >gi|225002480|gb|ACIZ01000099.1| GENE 91 100003 - 100641 516 212 aa, chain + ## HITS:1 COG:SA2456 KEGG:ns NR:ns ## COG: SA2456 COG0489 # Protein_GI_number: 15928249 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Staphylococcus aureus N315 # 17 211 22 212 230 102 31.0 6e-22 MTNELAHQFVSDASVSSQEFRTLRNNLSLQMSRSDRPVLLITSATEGEGKSYVAANLAAS FAMEGKKTLLVEGNLHRPILASVFDVKDTEGLSSLIHVNDAQAVNVDDLVINTKIQQLAV APAGSELGDPAKLLAGSSFKTFLDQVRHQFDLILIDGPAMADASEAGLIAELATGVVIVT KANGPSKHRVAQTIAQVRQLPATLIGTVLNQA >gi|225002480|gb|ACIZ01000099.1| GENE 92 100717 - 101766 521 349 aa, chain + ## HITS:1 COG:no KEGG:LC705_01986 NR:ns ## KEGG: LC705_01986 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 349 1 349 349 551 100.0 1e-155 MAFYLGLFAIMIIFMLLGRVTMSSVWAWLGVFMLAVVAGLRYETGNDFLPYKTIYAGDYS AGQVEPGFLFLRNVFNLVHAPFWLFLLAWATVTLVLFYCFAKEYFRPAIIPIAYYMSRFF FMRDMGQIRASLVCVICMLALKFVYDEKPLPFVLVVGLSATIHVSALFFLLIYPFWLLFR KITFKWVLGFLVLGAAGGFIAPKILSVIIVHTLPRYAPYVTNANYLSAGLFDPVTLMQVL ICITGFYILQRGIVADALIGGKDKFKFLMLVYLFATLTLLSLSQLSTIGGRLSTIATTTE TVVLPTIVFSIMPKKTRTLAMVGVCGVIFVLIFLISGAYKTFIPYQMAF >gi|225002480|gb|ACIZ01000099.1| GENE 93 102056 - 104380 974 774 aa, chain + ## HITS:1 COG:SMc00195 KEGG:ns NR:ns ## COG: SMc00195 COG1368 # Protein_GI_number: 15965601 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Sinorhizobium meliloti # 365 718 220 570 639 99 23.0 2e-20 MIDLETRFSRLNIKVAVLFFYLRYRPIRCWILLPLLLNELRFKLKQIEELKYQAVFWHYL LSVSLTEERWRQFGKRLSKRSHRRVKANTWLVADVPDFLLNWVTPDSRHVGLDIDDHGHL LPQARTLKAKMGFLAPHSLVVSPRFYRLFVRNTGLEKSARIEANNRLFKTYKGFNRYQIA LFLRNAFVLLIMAIITGIVTIYLASGDYDLKLTLLVFSSARLVLFNILPIFVVMLVTYLI FNRVQLAIFVGQALAIIVAMVNYFMLQYRDYPFEFADISLASEASNMGSRYSYIPPVKYF FIIGSLLILTIIVGLFLKPAMIRWNTRIIALVLVMVGSAFMLHRYYLVDDYYTLANNDPW GPDADRYVVNGYMFSFIHSVKNDWLLPPENYDAASAKSALTQYQYQNIPANKRVNVITIQ LEAFQDFSKWDQLDIDPSVYAGFHQVASEGMAGELTTTIFGGGTVDTERKVLTGFADLSP INGMTNSFVHYFNEQKYVTRFMHPGDAWFYNRQNIDRYLGFQKTLFRENYYDKNVANVDV VPDSEVFTDLVKQLKAVNANGKQFFNQTVTIQNHGPYGTDFDGDTLLPWKKGYNKKDYAI INNYLTGIKETSDALLELKDQLDQLDQPVVLAFWGDHNPWGGDKNSTYKMLGVNLKQSTR EGYENYYNTPYVMWSNQAAKKLMAKDFSGQGQTMSPMFVLPEIFSHVGWKGSQYMQVLQD LEAQVPVFGEKNHYMIDNKLTTKPNKSEKAVIKKFDDVQYYLKSNYMLNQAKLK >gi|225002480|gb|ACIZ01000099.1| GENE 94 104692 - 105486 521 264 aa, chain + ## HITS:1 COG:CAC0090 KEGG:ns NR:ns ## COG: CAC0090 COG0726 # Protein_GI_number: 15893386 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Clostridium acetobutylicum # 59 264 87 293 293 133 37.0 3e-31 MFSKQAASRRQQEAARRQSSEQVQSNSGRTHIPAADPYAYPIAQVKQEMTAPNTSSIKEK VVFLTFDDGPNTIISPQVLDILNRESVHGTFFVVGRQLSPETTPVLKAEYDAGHAIGLHS MTHNYNLLYPNRVGATSAIENEAKTEQTAVKQALGPDFNTHLWRYPGGHFSWKGLTGADT GLVRLGLDWIDWNAAVGDALGPAQAPKTEEAMLQYHLRSLMVYPDSHVRVVLMHDAVGKD LTVKTLPKIIAYYRSNGYKFGILE >gi|225002480|gb|ACIZ01000099.1| GENE 95 105720 - 107015 510 431 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 44 411 46 411 425 201 36 2e-50 MTEQISNEVTSENVLIAGISRQQPDFDYTMTELGELAKADNYTVVGEVRQNLDRAVAATY FGSGKVDDIRQLADVREASTVIINDELSPSQLRNLEKQTKLHVIDRTQLILDIFADRARS KAAKTQVEIAQLQYALPRLHPSANRLDQQVGGGAGFATRGAGETQLELDRRVLNKRISHL RQELKDASVGDQVRRARREDNAIPVVALVGYTNAGKSTTMNGLLQLFADRPEDKQVFEKD MLFATLDTSVRQITLPDNRKFLLSDTVGFVSKLPHNLIDSFKATLAEAANADLLIQVVDY SDENYPEMMAITEKTLREVGITNIPMIEAYNKADLREGTRYPEINGQRLVYSARDKRSLQ ALTDLIKANLFGQDEEHTYLIPFDQGQLVNYLNQETVVKTTDYTEHGTRITAVVNPVQKG KLARFAVKEGV >gi|225002480|gb|ACIZ01000099.1| GENE 96 107293 - 108177 622 294 aa, chain - ## HITS:1 COG:lin0768 KEGG:ns NR:ns ## COG: lin0768 COG1597 # Protein_GI_number: 16799842 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Listeria innocua # 6 290 6 294 309 192 36.0 5e-49 MLSYTIIYNPASGHAKGPTAAEQLKAKLEDRQRQVSMAPTKSADDARNFAYQAQSDIVVA VGGDGTINQVVAGLAPRKQPPTLAILPEGTVNNLAKVLHIPLLLPLAIKNILEAKPQPLD IAQVNDRYMVSTLTLGVLANAALSVTQKEKRHFGPIIYLLKGFKVLAQHQHWILHLNSAH NHWEKDTQFLLVSMTNSVGGFTNAVPDAAVDDGHLHVFIAPKLTWWRSLLAIPYFITGNF QKLPGMTYFATEQLTIEAPKTLQSRVDGDPSTKTPLKLTVIADHIQVLAPPVGK >gi|225002480|gb|ACIZ01000099.1| GENE 97 108503 - 110173 1484 556 aa, chain - ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 8 475 5 471 473 317 35.0 5e-86 MNDLEKPQKQFIPWMIVGLMDFVTVIGFDDIIYNFQNQGLVAFTSWIIMTFFYVIPYNLI VAHMGSTFSEHGGGITSWMRETNGDTVGYYAAWFYWITGLPYVVDVANSVVISFGWITNG NGNIQANLGNAWFGILTAVIFVIFIWLQHFFKNKSLEIMSTIGGGAMFIMTVLFVIMTFI GLSKGAPIATRPFDFKAFIPKDFFSLSFLSTFGLFVFAMNGSELAAPYTKDMRHPARDFP KALKMIAIMTMFLTLFGTFSLGVYFNAHHLPNDLKMNGSYYAFQAIGRQFGMGNSLMYLF AVVQGIYMLAQLAVILDASTRVFLSDVAKRFMPRQLTKMNEDGLPINGYWMTTILCALIM ALGALLPKINDIFNWLLNLNGIVSPLSTCFLFWSYTMVRLHQDRFPTPDYTFLKNRKVGL VVGIWMLGITFLLGTLGFFPTDATADTFALMLGLNIVVPIGMVALGVLMPWIAKRQRQAN NGLAFSRNTWLVLTTLSLVGLVVAATYGIHVNLLDHLTPVIQWPLIIIVDLAIAGVVLKV TANGRHQRVAGSPDEG >gi|225002480|gb|ACIZ01000099.1| GENE 98 110473 - 111231 300 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 248 1 243 245 120 32 4e-26 MDKQPVVTVENVTKTYGKQGEKQTPALKGVSFQVEPGEFVGIMGASGSGKTTLLNILSTL DTPTSGSVRIKGADVTKLKGDALSDFRAKKIGFIFQDFNLLENLTGRENIALPLALQNVS AKKQTEAVDKIAQTLGIERVLDHYPTELSGGQKQRVAAARALVQQPDILFGDEPTGALDS KAARELLDTMAHLNRDEGVSILLVTHDPFSASYASRILFIKDGQIGSELVHGDKSQEAFY QEILETLGTFQK >gi|225002480|gb|ACIZ01000099.1| GENE 99 111244 - 113052 1521 602 aa, chain + ## HITS:1 COG:CAC0227 KEGG:ns NR:ns ## COG: CAC0227 COG0577 # Protein_GI_number: 15893519 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 2 589 3 628 634 129 22.0 2e-29 MLSKLALGGLKNRFRDYAVLFSGLVIASAVFYMFMALATNTSFLKKNSPIGFTPFIFGFG AVLLAIITLVYIVYANSFLLSMRQRDYAMFMMLGAKGRKIGQLIFLETVTVGIMATIGGI LIGMVGTLFIGKWIIAALHAPATGFSPIWVPAILWTIGFFFVLFLLSAMYNAAKLLKTPM LQLLHQAQTPNRIKQRKSSFALQIVLGVILLAIGYYSMANVPKFQLMAIPLALVTIVLGT YFLFNSVFVALISLMKRNRTFAAKQLHTFTLSQLSFRIRDYTRILSVVAMLFALALGAIT VGMGFTHDIPKLASQSTVYDVTVASPNAATRAEINKLQDVTAKQQYELKSDAKTVYISKA KLDAHPLEIKAVDKGINAPNIKVTSQNFEKLIELYPGAFGIFIGNNRGKQMKVADAATFA KLGNSETLTTIKVKDFNQNYDTIQKIVTLQQHQYPRLWSSNGDQKFEFYAVVNGLYSGLA FMGFFLGIAFLAMLASTLMFKILSGANYDKNRYLMLQKIGARPRVLRRSIRQEIGALFLL PGVVGIVHVLFGLQLFKTLLSEPYGHLLVPFALFIVLYGLYYLATVWIYQSIVINKNLAS KS >gi|225002480|gb|ACIZ01000099.1| GENE 100 113486 - 114379 914 297 aa, chain + ## HITS:1 COG:lin2979 KEGG:ns NR:ns ## COG: lin2979 COG0235 # Protein_GI_number: 16802037 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 14 275 2 262 273 333 56.0 3e-91 MAGSKKDFLNPEYTQAFIDSPFVQQMRKVTWNLYQHGWDERNGGNVSYRLTKQEVGQYGD VHEVKRTIPIKFDASALAGQYFLVTGTGRYFKNVKDFPERDTGLVRINQDGQSVDLLWGF SDGGQPTSEFPAHLMTHIQRLKQDPNQRVVMHCHPTNTIAMTFTLPWKEKLFSRILWKMQ AESIVVFPEGVGVLPYMTPGTNEIGQATAEKMGQYRIVLWPLHGIFGVGDSIDETYGLIE TVEKAATIYTAIQAQGGQFVNEITDENLEQLAERFDLTPNPEFIHGGSLIEKKELVH >gi|225002480|gb|ACIZ01000099.1| GENE 101 114512 - 115177 664 221 aa, chain - ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 4 184 3 185 224 117 38.0 1e-26 MATKGITVYLVRHGQTWFNHFNKMQGWSDSPLTENGIKDGTNTGVILRNVAFTHAYCSDT TRATRTADLILSKNVTGKIPLTVTPFFREQFYGYFEGEDSGQTWYMVGFPHGARTYPEIL EKYGVDASKDFMHDADPFHEAEDARTYWTRLMKGFRQLRSENHEGDKVLMVSHGTTIRSI VDKFGKNDGFVVTDSPRNGSISKILLTDTGIKVLSYNEFEA >gi|225002480|gb|ACIZ01000099.1| GENE 102 115472 - 116443 728 323 aa, chain + ## HITS:1 COG:L0194 KEGG:ns NR:ns ## COG: L0194 COG0276 # Protein_GI_number: 15673549 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Lactococcus lactis # 3 310 5 311 314 219 38.0 6e-57 MAKGLLIVNLGSPVSPQTKDVRRYLREFLSDQNVITMPKILWQPILRGFVLPFRSWRSAT FYQHEWTQAGSPLIAYTQVTRDRLRQALPDWDVQMAMTYGGQYPIAATLQVMAARGDRPI VVIPLFPAYTQSTTKTILEKVAASGVKTLNVEHFYEQSAYQKLLAQQLDDAYIQGDYDAV IMSYHGIPTAMVRHGDPYQQACEATTAGVKRYLTKVPPAIVETCYQSKFGPVPWLKPYLR NRLMALAALGKRRVLVTTPSFVTDCLETLEENDVQNYQTFRANGGKVFKTVRPMNGSSAF CDFLATLAKEKVAAEVMRHDQAK >gi|225002480|gb|ACIZ01000099.1| GENE 103 116427 - 117782 1267 451 aa, chain + ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 5 446 9 442 450 354 45.0 2e-97 MTKRNEQLSVQQAKPSLDEINRSVQVPGVYEPSFVQKFLAYSGPGALVAVGYMDPGNWLT ALEGGSRYHETLLAVLLLSILAAMFMQTLAIKLGVVARLDLAQAIAAFVPKWSRIGLWLV NEAAMMATDMTGVVGTAIALKLLFGLPLMWGMLLTIADVLVVLMFLRFGIRRIELIVLAS ILTVGIIFGIEVVRARPSMGGIVAGLVPHTGILTNRGMLLLSLGIMGATIMPHNIYLHSS LAQSRRYDEHIPAQVTEALRFGKWDSNVHLVAAFVINALLLILGATLFYGMSSHATAFEG VYNGLKNPAIVGGLASPLMSTLFAFALLITGLISSIASTLAGQIVMEGYLNIQIPLWARR LLTRLVTLIPIMIIGFVMGFSEQHFEQVIVYAQVALSIALPFTLFPLVALTDRRDLMGQH VNSPVVRWMGYVLTGIITLLNVQLILSVILP Prediction of potential genes in microbial genomes Time: Wed May 25 20:16:07 2011 Seq name: gi|225002479|gb|ACIZ01000100.1| Lactobacillus rhamnosus LMS2-1 contig00108, whole genome shotgun sequence Length of sequence - 3866 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 45 - 506 378 ## LC705_01972 hypothetical protein - Term 529 - 581 5.6 2 2 Op 1 1/0.000 - CDS 585 - 1490 829 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 1514 - 1573 4.4 3 2 Op 2 . - CDS 1647 - 3476 1387 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 3541 - 3600 5.6 + Prom 3428 - 3487 2.7 4 3 Tu 1 . + CDS 3548 - 3745 200 ## LC705_01969 hypothetical protein + Term 3833 - 3865 0.6 Predicted protein(s) >gi|225002479|gb|ACIZ01000100.1| GENE 1 45 - 506 378 153 aa, chain - ## HITS:1 COG:no KEGG:LC705_01972 NR:ns ## KEGG: LC705_01972 # Name: yjhE # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 153 1 153 153 302 100.0 2e-81 MAYTVDFKTVSTNGLESSPVAPALAGLRANEARYIWNKYKVPYVAYPVSEKPDSLAWVQA ILAERELHIAAKPLEICDLALPDLRWVEVYYQDGLAINVMYHLTDPKKRAVGFKLSDGMT VPAELADKFKFARQKSKLAGTIRGSFFVIKGSY >gi|225002479|gb|ACIZ01000100.1| GENE 2 585 - 1490 829 301 aa, chain - ## HITS:1 COG:SSO3115 KEGG:ns NR:ns ## COG: SSO3115 COG0596 # Protein_GI_number: 15899824 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sulfolobus solfataricus # 27 294 40 303 310 153 35.0 3e-37 MKQGTTILTLDNGYHLWTNTQGEGDIHLLCLHGGPGGTHEYWENFGEELADLGVQVHMYD QLGSFYSDQPDYSDPEIAKKYLTTDYFLGEVEEVRKKLGLDHFYLIGQSWGGALTQLYAL KYGQHLKGAIISSMVDNINEYVEHINLVREEALPPSAVKYMKKIEKAGDWDDPQYQKYVD VLNRGYVDRKQPPAISHLISTMATPVYNAFQGDNEFVVTGKLKDWDISDQIHNIKVPTLL TFGEHETMPLKAAQRMAEVIPHARLVTTPNGGHHHMIDNAPVYFKHLKQFISDVENGTFN D >gi|225002479|gb|ACIZ01000100.1| GENE 3 1647 - 3476 1387 609 aa, chain - ## HITS:1 COG:SA0868_1 KEGG:ns NR:ns ## COG: SA0868_1 COG0475 # Protein_GI_number: 15926598 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 393 1 399 399 257 39.0 6e-68 MESISLLIVLTAALLTPLLMAHFHINSIPTAVAEILVGIILGKSLLGWVHTGGEMQALSE LGVTILIFLSGMEIDFSLFKPQPKTDKGPQPANPVVLATVGFATVIIISLGFSYLLKFIH FYNFSIFATILFTTIALGVVIAALKEQELLHQPLGQTILLIAALGEVIPLISLTIYSALN GSSDNNLWLLLLLLLAALVLLARFKHIYSFFAAIDKSTTQLDIRLAFFLVFTLVTIASRV GAESILGAFLAGMVMKLLGPRQETQDKLTSLGYGFFIPIFFIVTGANLDLKALVADPKSL SLIPLVLIGFFITKIGLIPVLRQRFKPQNALAGTFLATTTITLVIPTLTVGRNLGIVTEQ QSGAFTLAAVIACVAGPILFNSFFKPEPETFKKTRVTFIGGNLLTVPIAQHLSPERYEVQ LFTDRVENFRTYNSEVAITLTDYQENALKAAGAYYCDVMVLGDFDADTNYDLAKMALAQK VPRIIARFAAKDTTSDRYDRLRDDGVEVFNALDANVALLRSLIETPSTLKILDDTIAGIY EVTIRNSRFAGLELKNLPFIDDITVSQIYRQKKFIAPHGDTQLHLGDHLIFSGDKHLIRN IRAQVEKLN >gi|225002479|gb|ACIZ01000100.1| GENE 4 3548 - 3745 200 65 aa, chain + ## HITS:1 COG:no KEGG:LC705_01969 NR:ns ## KEGG: LC705_01969 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 65 1 65 65 114 100.0 1e-24 MIQNQKPSRQGKSFFNRRAVIVGTCVLIGLLVSLPFKKILLGVAVGLAVGYVLEAWTPLL RGKLK Prediction of potential genes in microbial genomes Time: Wed May 25 20:16:36 2011 Seq name: gi|225002478|gb|ACIZ01000101.1| Lactobacillus rhamnosus LMS2-1 contig00109, whole genome shotgun sequence Length of sequence - 89529 bp Number of predicted genes - 88, with homology - 83 Number of transcription units - 57, operones - 17 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 151 - 210 5.3 1 1 Op 1 . + CDS 245 - 2536 2214 ## COG3973 Superfamily I DNA and RNA helicases 2 1 Op 2 . + CDS 2541 - 3017 397 ## COG1607 Acyl-CoA hydrolase + Term 3129 - 3178 11.2 - Term 3306 - 3342 3.1 3 2 Tu 1 . - CDS 3423 - 3530 65 ## - Prom 3681 - 3740 6.0 4 3 Tu 1 . + CDS 4001 - 5410 1163 ## COG4690 Dipeptidase + Term 5415 - 5469 11.1 - Term 5415 - 5444 0.4 5 4 Op 1 . - CDS 5459 - 5746 234 ## LC705_01962 hypothetical protein 6 4 Op 2 . - CDS 5796 - 6146 331 ## LC705_01961 hypothetical protein - Prom 6193 - 6252 5.1 + Prom 6378 - 6437 4.0 7 5 Tu 1 . + CDS 6462 - 7388 908 ## COG1072 Panthothenate kinase + Prom 7485 - 7544 5.9 8 6 Tu 1 . + CDS 7570 - 9123 1317 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 9217 - 9257 3.2 + Prom 9277 - 9336 8.3 9 7 Tu 1 . + CDS 9363 - 10274 249 ## LC705_01958 abortive phage resistance protein + Term 10357 - 10398 -0.4 10 8 Tu 1 . - CDS 10761 - 10886 66 ## - Prom 10966 - 11025 3.3 + Prom 11143 - 11202 4.2 11 9 Tu 1 . + CDS 11383 - 11913 -32 ## LC705_01957 hypothetical protein + Prom 12752 - 12811 3.2 12 10 Tu 1 . + CDS 12944 - 14182 210 ## LC705_01955 abi-alpha protein + Prom 14472 - 14531 4.1 13 11 Tu 1 . + CDS 14683 - 15441 294 ## LC705_01954 hypothetical protein + Term 15515 - 15549 2.0 + Prom 15523 - 15582 9.4 14 12 Op 1 . + CDS 15669 - 17240 1296 ## LC705_01953 hypothetical protein 15 12 Op 2 . + CDS 17271 - 17426 194 ## 16 12 Op 3 . + CDS 17487 - 17690 73 ## + Term 17929 - 17988 18.6 + TRNA 17897 - 17969 54.1 # Undet ??? 0 0 + Prom 18250 - 18309 3.0 17 13 Tu 1 . + CDS 18342 - 18707 190 ## gi|229553246|ref|ZP_04441971.1| hypothetical protein HMPREF0539_2503 + Term 18737 - 18770 -0.2 18 14 Tu 1 . + CDS 19074 - 19385 268 ## LC705_01950 transcription regulator + Term 19551 - 19589 1.3 19 15 Tu 1 . - CDS 19380 - 19589 257 ## LC705_01949 hypothetical protein - Prom 19722 - 19781 5.3 + Prom 19708 - 19767 4.2 20 16 Tu 1 . + CDS 19819 - 20604 647 ## LC705_01948 hypothetical protein + Term 20619 - 20673 0.2 21 17 Tu 1 . + CDS 20706 - 21608 548 ## COG1715 Restriction endonuclease + Term 21689 - 21736 1.6 - Term 21677 - 21722 7.2 22 18 Tu 1 . - CDS 21848 - 22174 271 ## LGG_01954 XRE family transcriptional regulator + Prom 22686 - 22745 5.3 23 19 Tu 1 . + CDS 22832 - 26434 3042 ## LC705_01945 hypothetical protein + Term 26487 - 26528 4.2 - Term 26578 - 26630 5.1 24 20 Op 1 . - CDS 26667 - 27191 427 ## LC705_01944 hypothetical protein 25 20 Op 2 . - CDS 27178 - 27381 353 ## COG1476 Predicted transcriptional regulators - Prom 27425 - 27484 8.5 - Term 27482 - 27541 15.1 26 21 Tu 1 . - CDS 27579 - 28331 631 ## LC705_01942 M10 family Zn-dependent endopeptidase - Prom 28413 - 28472 4.5 + Prom 28364 - 28423 3.7 27 22 Op 1 . + CDS 28527 - 29369 438 ## LC705_01941 aminoglycoside phosphotransferase 28 22 Op 2 . + CDS 29446 - 29844 392 ## LC705_01940 hypothetical protein + Term 29879 - 29929 13.5 29 23 Op 1 35/0.000 + CDS 30307 - 31893 1292 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 30 23 Op 2 . + CDS 31895 - 33547 1004 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 31 23 Op 3 . + CDS 33613 - 33876 241 ## LC705_01937 hypothetical protein + Term 33902 - 33939 4.5 32 24 Op 1 21/0.000 + CDS 34845 - 36515 1416 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 33 24 Op 2 49/0.000 + CDS 36619 - 37569 947 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 34 24 Op 3 . + CDS 37584 - 38540 806 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 35 25 Op 1 . + CDS 38642 - 38950 424 ## LC705_01932 hypothetical protein 36 25 Op 2 44/0.000 + CDS 39023 - 40087 1093 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 37 25 Op 3 . + CDS 40108 - 40998 337 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 + Term 41074 - 41116 9.2 38 26 Op 1 . - CDS 41389 - 42093 264 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 39 26 Op 2 . - CDS 42112 - 43488 585 ## LC705_01928 hypothetical protein - Prom 43512 - 43571 2.8 - Term 43500 - 43535 -0.6 40 27 Op 1 . - CDS 43618 - 44331 667 ## LC705_01927 ABC transporter permease 41 27 Op 2 8/0.100 - CDS 44324 - 45040 616 ## COG1131 ABC-type multidrug transport system, ATPase component 42 27 Op 3 . - CDS 45030 - 45407 377 ## COG1725 Predicted transcriptional regulators - Prom 45438 - 45497 6.9 + Prom 45446 - 45505 2.5 43 28 Tu 1 . + CDS 45577 - 46431 721 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Term 46443 - 46482 0.4 44 29 Tu 1 . - CDS 46535 - 47566 974 ## COG1396 Predicted transcriptional regulators - Prom 47586 - 47645 2.7 45 30 Tu 1 . - CDS 47679 - 48416 625 ## COG0730 Predicted permeases - Prom 48534 - 48593 4.9 + Prom 48643 - 48702 7.2 46 31 Tu 1 . + CDS 48763 - 50166 979 ## COG0477 Permeases of the major facilitator superfamily + Term 50182 - 50237 3.4 47 32 Op 1 . - CDS 50314 - 50946 589 ## COG1309 Transcriptional regulator 48 32 Op 2 4/0.100 - CDS 50943 - 52559 1439 ## COG3559 Putative exporter of polyketide antibiotics 49 32 Op 3 1/0.200 - CDS 52546 - 53463 279 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 53592 - 53651 4.5 - Term 53682 - 53723 6.5 50 33 Tu 1 . - CDS 53769 - 54524 617 ## COG0778 Nitroreductase - Prom 54553 - 54612 3.2 51 34 Op 1 . - CDS 54633 - 55478 659 ## LC705_01916 hypothetical protein 52 34 Op 2 . - CDS 55610 - 55948 305 ## COG1695 Predicted transcriptional regulators - Prom 56064 - 56123 11.1 + Prom 56037 - 56096 7.5 53 35 Tu 1 . + CDS 56180 - 56797 585 ## COG2085 Predicted dinucleotide-binding enzymes 54 36 Tu 1 . - CDS 56802 - 57308 289 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 57346 - 57405 3.7 + Prom 57211 - 57270 1.5 55 37 Op 1 . + CDS 57361 - 57915 299 ## COG1859 RNA:NAD 2'-phosphotransferase + Term 57918 - 57965 6.2 + Prom 57920 - 57979 4.4 56 37 Op 2 . + CDS 57999 - 58256 352 ## LGG_01922 hypothetical protein + Term 58352 - 58408 15.3 + Prom 58262 - 58321 6.5 57 38 Tu 1 . + CDS 58538 - 59887 1392 ## COG2851 H+/citrate symporter 58 39 Op 1 . + CDS 60282 - 60605 372 ## LC705_01908 hypothetical protein 59 39 Op 2 9/0.100 + CDS 60611 - 61018 376 ## COG0511 Biotin carboxyl carrier protein 60 39 Op 3 . + CDS 61033 - 62157 1245 ## COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit 61 39 Op 4 . + CDS 62224 - 62367 277 ## gi|199598470|ref|ZP_03211888.1| hypothetical protein LRH_09093 62 39 Op 5 5/0.100 + CDS 62369 - 63373 985 ## COG3053 Citrate lyase synthetase 63 39 Op 6 6/0.100 + CDS 63363 - 63668 437 ## COG3052 Citrate lyase, gamma subunit 64 39 Op 7 6/0.100 + CDS 63656 - 64534 1040 ## COG2301 Citrate lyase beta subunit 65 39 Op 8 7/0.100 + CDS 64534 - 66066 1421 ## COG3051 Citrate lyase, alpha subunit 66 39 Op 9 1/0.200 + CDS 66047 - 66607 442 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 67 39 Op 10 . + CDS 66600 - 68003 1273 ## COG5016 Pyruvate/oxaloacetate carboxyltransferase + Term 68071 - 68110 5.9 + Prom 68101 - 68160 3.9 68 40 Op 1 1/0.200 + CDS 68181 - 68876 734 ## COG1802 Transcriptional regulators 69 40 Op 2 . + CDS 68869 - 69729 676 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase + Term 69784 - 69834 6.0 + Prom 70383 - 70442 9.6 70 41 Tu 1 . + CDS 70467 - 70778 245 ## LC705_01897 hypothetical protein + Term 70835 - 70876 1.4 - Term 71036 - 71071 1.4 71 42 Tu 1 . - CDS 71083 - 71481 439 ## LC705_01896 phage-related infection protein - Prom 71545 - 71604 4.1 + Prom 71573 - 71632 5.6 72 43 Tu 1 . + CDS 71702 - 72313 553 ## LC705_01895 hypothetical protein + Term 72361 - 72410 11.2 - Term 72348 - 72398 13.0 73 44 Tu 1 . - CDS 72418 - 73227 713 ## COG0657 Esterase/lipase - Prom 73258 - 73317 6.6 + Prom 73198 - 73257 4.8 74 45 Tu 1 . + CDS 73363 - 74232 266 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 74378 - 74424 7.4 - Term 74364 - 74414 10.0 75 46 Op 1 . - CDS 74438 - 74587 250 ## PROTEIN SUPPORTED gi|116495314|ref|YP_807048.1| ribosomal protein L33 76 46 Op 2 . - CDS 74650 - 75225 610 ## LC705_01891 hypothetical protein - Prom 75408 - 75467 2.7 77 47 Tu 1 . - CDS 75517 - 76548 421 ## LC705_01889 cell surface protein - Prom 76614 - 76673 1.9 78 48 Tu 1 . - CDS 76675 - 76794 105 ## - Prom 76829 - 76888 4.9 79 49 Tu 1 . + CDS 77589 - 78122 912 ## PROTEIN SUPPORTED gi|199598487|ref|ZP_03211905.1| Acetyltransferase, including N-acetylase of ribosomal protein + Term 78132 - 78173 5.6 + Prom 78145 - 78204 5.8 80 50 Tu 1 . + CDS 78229 - 78780 537 ## LGG_01900 hypothetical protein + Term 78840 - 78884 12.2 81 51 Tu 1 . + CDS 79103 - 80779 1246 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 80906 - 80960 13.7 + Prom 80905 - 80964 1.9 82 52 Op 1 . + CDS 81131 - 81841 565 ## COG3527 Alpha-acetolactate decarboxylase 83 52 Op 2 . + CDS 81926 - 82069 83 ## gi|199598491|ref|ZP_03211909.1| hypothetical protein LRH_09198 + Term 82110 - 82157 6.1 84 53 Tu 1 . - CDS 82138 - 82455 89 ## LC705_01881 hypothetical protein - Prom 82482 - 82541 1.8 + Prom 82240 - 82299 2.8 85 54 Tu 1 . + CDS 82498 - 83961 1274 ## COG0833 Amino acid transporters + Term 83981 - 84025 11.6 - Term 83962 - 84020 6.7 86 55 Tu 1 . - CDS 84090 - 85616 1124 ## LC705_01879 transcriptional regulator - Prom 85654 - 85713 5.3 + Prom 85768 - 85827 3.5 87 56 Tu 1 . + CDS 85995 - 87572 1215 ## LC705_01878 transcriptional regulator 88 57 Tu 1 . + CDS 88015 - 89298 1048 ## COG0172 Seryl-tRNA synthetase + Term 89319 - 89360 8.1 Predicted protein(s) >gi|225002478|gb|ACIZ01000101.1| GENE 1 245 - 2536 2214 763 aa, chain + ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 5 761 7 771 774 504 38.0 1e-142 MAGNEQAKEQQHLDAIMKELSGAKERLSKEMAKTKTEEKNISDNFFNDFSLNFTNYAETI ETAASIQQQQRVLDERTNAWKQSAQQLVTVQRLLGNPYFARIDFQEGREKPETIYIGLGS FTNEAGKFLIYDWRAPISSIYYDGGLGKVTYQTPDGPQQVTVSLKRQFVIKNGQIQTMFD TTETIGDQMLLEVLGEKSDTQMKTIVTTIQREQNQIIRDTKADLLFVQGAAGSGKTSAVL QRVAYLLYRYRGNLTSSQVIMFSPNQLFSDYISNVLPELGEQNMVQFTYYQYVTRRLPHI EVQNLFSQFEQQLTPVQKKIARVKGSLDFFKTAQTYATSLERSGLRFRDIRFRGEVFFSR KRIREIFYSYNENYHMGNRLNATKERLIKMLNRKIESETKAQWVQEAVQNLSDEEIRSMQ QDGPKEFKNSDDEYRFFARQLVMKGFDAIQQDIVRNRFINIRGQYVSFLREVPAIYDLAA EGISEADWQAEVDHFIAMFKERKLPMADATPYLHLYDLITGRHGEREMRYVFVDEIQDYT PYQLAYLKASFPRAKFTLLGDLNQAIFTKDDSRTLINETSKLFDPEKTRVVQLTQSYRST KQVTDFTKAILTSGQKIVAFNRQGPLPKLIVRPDEAGLMTALQAQLKVNDEAKQTTAVIA KTLEAAEAIYAKMKAAGIKVTLIKSENQRLAAGVIVVPSFLAKGLEFDAVVLWQVNAKNY HEEDERELLYTVASRAMHRLTMLASPDVTPLLDKVPEELYERG >gi|225002478|gb|ACIZ01000101.1| GENE 2 2541 - 3017 397 158 aa, chain + ## HITS:1 COG:lin2060 KEGG:ns NR:ns ## COG: lin2060 COG1607 # Protein_GI_number: 16801126 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Listeria innocua # 5 154 10 164 172 112 40.0 4e-25 MVKMRDTLAVSSYRVFPGMLNAHQTLFGGQIFTWIDDVSSIAAQRLGRRGLATGSLDMVR LAAPVKMGDALIIKCMVSGVGHRSLEVFVQLIGEHLASGERFQVGTAFATFVARHKEDGP LPPVEAESDFEKRLLAGYAERRADYRKINASFGEVPLD >gi|225002478|gb|ACIZ01000101.1| GENE 3 3423 - 3530 65 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSVFEALSLVNQVVDNFMTLIVLVTVLTAENKRKK >gi|225002478|gb|ACIZ01000101.1| GENE 4 4001 - 5410 1163 469 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 1 469 3 474 474 597 60.0 1e-170 MAKRYVGSCTTVLVGKKASIDGSTIIARNEDGESPLHPQKFVYVKPEDQPRHYQSVLSKF SIDLPADPLGYTSTPEAEDGHGIWAAAGINSENVAMTSTETITTNSRVLGVDPLVAEGIG EEDMPTIVLPYIHSAREGVQRLGSLLQQYGTYESNGIAFADKDEVWYFESIGGHHWAAIR IPDDAYVVAPNRFNITDFDFASDDTMSSADLRDLIETYHLNPDPEGYNLRHIFGSATIKD TRYNNPRAWYGQKYFNPEFDTTPIDQDLPFICRTNKKISIEDVKFVESSHYENTPYDVYG SLGTPAQKKLYRPIGINRNQELHILQIRNDVPAAIAGVHWLAFGPNTFNTVVPFYANVTD TPAAYRDTGDKFDVTKMYWLSNLLATFGDYDFSLFKDQEDVFEQKTVAACRHLQLETDKA VQDAKDIQAHLTAVNKKMADLAMTNSNELLGQMVAAAAPNMKLAFKLQD >gi|225002478|gb|ACIZ01000101.1| GENE 5 5459 - 5746 234 95 aa, chain - ## HITS:1 COG:no KEGG:LC705_01962 NR:ns ## KEGG: LC705_01962 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 95 1 95 95 118 100.0 6e-26 MRQILSFLGSILIAIFLVPTFRRNPRPFWYWTWYILLVIFCVSVTAFALWLLVLTQLRAT KGTIVLVGLLLVVLMPVFLIRATLRFRDYRRRAKQ >gi|225002478|gb|ACIZ01000101.1| GENE 6 5796 - 6146 331 116 aa, chain - ## HITS:1 COG:no KEGG:LC705_01961 NR:ns ## KEGG: LC705_01961 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 116 1 116 116 195 100.0 5e-49 MIEFLLELFSDIIFEFLLAPIFMPEFDLTASPKFNGFRMVLTSLIDGGITAAGAWLLIES LTADPISIMIVFVAAVLLLAGLFMWYRVSIRFFNYRRALVKERAEKIAAEKPYQEL >gi|225002478|gb|ACIZ01000101.1| GENE 7 6462 - 7388 908 308 aa, chain + ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 1 308 1 306 306 305 53.0 8e-83 MQSEMNFYKFDRAEWSQFHSQNFTSVTDAELAQLRSLNDEISLDDVKTIYSPLRHLIHIR YEDYQGDMFTLSRFLGMQRNPHTPFIIGIAGSVAVGKSTTARLLQLLLSRAYPDKRVQQI TTDGFLYPNAELERRGILDRKGFPESYDMELLIHFMNNVKNASGVVRAPKYSHQIYDIVP NEYEVIDRPDILIVEGINVLQLPSKQPIYVSDYFDFSIYVDADPVLIEQWYLERFGILLD TAFTDPSNYYYQYAIGNRADAFAMARQVWHDVNLKNLKEYILPTKNRADVILHKTKGHKI DQVSLRKW >gi|225002478|gb|ACIZ01000101.1| GENE 8 7570 - 9123 1317 517 aa, chain + ## HITS:1 COG:SP1445_2 KEGG:ns NR:ns ## COG: SP1445_2 COG0519 # Protein_GI_number: 15901295 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Streptococcus pneumoniae TIGR4 # 202 517 1 316 316 506 78.0 1e-143 MANDQNKDYDKIIVLDYGSQYNQLITRRIREFGIYSELKPHTITAAEVKEIAPKGIIFSG GPNSVYDEGALGVDEDIFKLGIPILGVCYGMQLMAQRLGGDVEPADNREYGKADIEVTDA SAKLFHDLPKDQTVWMSHGDLVTRVPDGFRTTATSVNCPISAMDDDDRKFYGIQFHAEVQ NTQYGHEILHHFAFDVCHAEANWSMDDFITKQIAKIRAEVGDKRVLLGLSGGVDSSVVGV LLHKAIGTQLTSIFVDHGLLRKGEAEQVMDSLKGKFGLNIIKVNAKDRFLNDLKGVTDPE KKRKIIGRDFIEVFNEEAAKLNGIEFLAQGTLYTDVVESGTDTAQTIKSHHNVGGLPEDL KFKLIEPLNKLFKDEVRELGEKLGMPHSLVWRQPFPGPGLGIRVIGEVTEDKLEIVRDSD YILREEIAKHGLDKDIWQYFTVLPGFRSVGVMGDGRTYDYTIGIRAITSIDGMTADFARI DWDVLQEISSRIVNEVKHVNRVVYDITSKPPATIEWE >gi|225002478|gb|ACIZ01000101.1| GENE 9 9363 - 10274 249 303 aa, chain + ## HITS:1 COG:no KEGG:LC705_01958 NR:ns ## KEGG: LC705_01958 # Name: abi # Def: abortive phage resistance protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 303 1 303 303 570 100.0 1e-161 MESENFELLENTDITTFLIDRPWVTYRTNADLEKLGARFGSPNPEGSNRLRRMSSIIKST HASNRTSSLLSFLFSPAQLRPVINEYLAGSRFSQLKEIDNFVLEGLTGDVSKDILIVAEA IKRRVIQEINAILLYSNFKLVSSGNSWEIVAADNDIKISVPIKRINSGYISNLLAQGLDD LQDNDFDSVVTKSRTIVEEVFLQILADNNVECKHNGDISKYRNLVVKTLGMRPSKEWNPR VTKMISHLNGIIDLIAEMRNKDGDAHASNERVKIKAAEAELLLNTSVSVATYYLRISDRH TLG >gi|225002478|gb|ACIZ01000101.1| GENE 10 10761 - 10886 66 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MINITNILGVNTSKFPNKINYISSSYLIGLTPAPLVTPKFS >gi|225002478|gb|ACIZ01000101.1| GENE 11 11383 - 11913 -32 176 aa, chain + ## HITS:1 COG:no KEGG:LC705_01957 NR:ns ## KEGG: LC705_01957 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 176 184 359 359 342 99.0 3e-93 MAIFLFFILGVYLVNVSVGLSIYFIQNPQEQTTKINKVDYNLFDAKASDFTALHNAVLFS TRLFAGGQQFLSNSDPSVPVRQLEEKGVKKLSAEQTTELYPILAEATLIQFCYTVIGFAL IMDWISRRVTTFTEHNSGINPSINGLTKETLQIEAILGARKSQLIEKRKPIIHRKG >gi|225002478|gb|ACIZ01000101.1| GENE 12 12944 - 14182 210 412 aa, chain + ## HITS:1 COG:no KEGG:LC705_01955 NR:ns ## KEGG: LC705_01955 # Name: not_defined # Def: abi-alpha protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 412 1 412 412 839 99.0 0 MNTEELKIWLDKPEGDHHDFKEHWYHKGQKPELVKDIFSFVNTVHHDDCLLILGVNDQRK VTGVEDDENWRLNQQQLIDFMRKLPISGELIPRLGVETIHIGEHEVDVIRIFNSNNVPVF LGRKWNEKGLPNNVILPGQIFTREQDVNTARDSTADYHQVERLFKKHFRMDTPIEERYKY TLSDTSNWRYTEADGFVFQYSPNPDFYMVLCDDDEDRYKAEAYSLDQFRTKMSWQSLKIK FRQSTIDTLLVVWLDGGRLVVVKPDVGILRSDSSRPLSYYCLIENTIAGRVQNLFATGLP LTADPYSLNAFYKSVVLFRSEDEKNNLESLLVERIDDVESLIKPTEDEITGIAGRMAMDF KSTEQEVQDTTISYMLVQHAMGRLMNDCLLDYRRGNDISGVISRWRQKRTEG >gi|225002478|gb|ACIZ01000101.1| GENE 13 14683 - 15441 294 252 aa, chain + ## HITS:1 COG:no KEGG:LC705_01954 NR:ns ## KEGG: LC705_01954 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 252 30 281 281 470 100.0 1e-131 MTNSISDSSPILVLPNHQYMVRRTGQIKNMQPKSVTRADDIASVKRTMRKLRRLVIANFN GGADQLWVTLTFKRNVQDPKDAYQAFTRFRLRMRRRYRVSYISVIEPQASGNWHFHVLMK SDDGSSLTISNDQMANMWGEGFVKVKRLHNGENVASYLMAYLTNLDIEDTDKVTGKKSKR IIKGARLVLYPRGLRIYRASKGIQRPKEMRGVKIDILCREKIANSPSAVFKSQVETNSGL ILYFTTEYYRTH >gi|225002478|gb|ACIZ01000101.1| GENE 14 15669 - 17240 1296 523 aa, chain + ## HITS:1 COG:no KEGG:LC705_01953 NR:ns ## KEGG: LC705_01953 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 523 1 523 523 504 99.0 1e-141 MKKKTISTTIATGLLLAPMALGLVANQAPAATVHAATSTIAKTPSNNALANWTANTPSHI KQQIQSQGIDPSNVKAAIYTIQWGDTLWGISQATGITIDQLATNNHIANRDLIIAGAKLT LNGSAKAQAFVQNAPGQSAESKASVSGAGNIAANTTGAATGTTTTATGATTGATGSAAGT SSKADTSTPSTTPSGTESTGSGVTGGKTGATTPSGEGSSAVTPSTPSTGSSAGSSAASGS SSSASEGSSSASKPSTGSGSQASSGSSSQASSGSSSAGSSSAGSSSGASGSSSSASTPSQ PSTGSGSEGSGSSTPSQPSTPTATYADVTVKAVTSDGTVLKTATISHQAVGTSVTAQASS VAVSGYDLNDNSSKSATVTKSGAVITFTFKKHETPAPAGKTYTPNVDHIKQLVMAKYNLA SHGKYWGKPVGTPGDNGSIVGADGHLYLATPETWPTDSNPYTSDEQIAEAIWETRVTQAL DDPNNVSAVIDTLTATGSTTINPNGTVSGKIQTYMHLTWYQKF >gi|225002478|gb|ACIZ01000101.1| GENE 15 17271 - 17426 194 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTFILEVAYAAMIIFSLEVTHYSIVTIIYVILSMVVVGWYNYERNQMTRR >gi|225002478|gb|ACIZ01000101.1| GENE 16 17487 - 17690 73 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTIFDFIHDIFAVLGNFIMQLVYMMILIVHLIITADPISVLIFGLLCMVAIGAYGYHLLA QNHQLLR >gi|225002478|gb|ACIZ01000101.1| GENE 17 18342 - 18707 190 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229553246|ref|ZP_04441971.1| ## NR: gi|229553246|ref|ZP_04441971.1| hypothetical protein HMPREF0539_2503 [Lactobacillus rhamnosus LMS2-1] # 1 121 1 121 121 224 100.0 1e-57 MFKKKLVFIFVPLLVIMLVTLSGCGSSMAGTYHGTSGRTTMTLSKDGSAGYGEITANGDS KTWHGKWKVSGNSIHIVLKSSSDYGFNLKGTIHDKDTFELPDQRGTGENNSWDDETFTRS R >gi|225002478|gb|ACIZ01000101.1| GENE 18 19074 - 19385 268 103 aa, chain + ## HITS:1 COG:no KEGG:LC705_01950 NR:ns ## KEGG: LC705_01950 # Name: not_defined # Def: transcription regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 103 1 103 103 130 100.0 2e-29 MLMNIGRIVRERRQAKGMTIEQLAEKADVSVSLISRLERERVDNIKLANLAAIANALQLQ MADFFRDSRLQTPKVVELLDYLAEQPEEKREDAAALMLRLMKL >gi|225002478|gb|ACIZ01000101.1| GENE 19 19380 - 19589 257 69 aa, chain - ## HITS:1 COG:no KEGG:LC705_01949 NR:ns ## KEGG: LC705_01949 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 69 1 69 69 120 100.0 1e-26 MNLEQTLLDLQNLKFEIFVSAKYGLDYHCFKLLTLELPDKTINLADLYHAHKSSGVEALA HQIVATYDL >gi|225002478|gb|ACIZ01000101.1| GENE 20 19819 - 20604 647 261 aa, chain + ## HITS:1 COG:no KEGG:LC705_01948 NR:ns ## KEGG: LC705_01948 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 27 261 1 235 235 480 100.0 1e-134 MNIKAILSGKMQIHLFEVAQQNMEDYMASKPIYTFYCKLHDVLPETWRLIQLPLNRSVAQ LAYAVMTTFEMQARHLFNVTVFKDPSNQNSLRRSKDDTVYTTDVDEDREVYGSSVADAVA TQIDSVFAPGHREAVLNYDYGDGWKVSIVLVDIMTDPELKVRDLPRVIAGAGYGIVEDIG GTYGLYQLEDAFQNPTSGTDHDIEEKQAMREWFWLDHFDMNEFDRDEMNSRIKKIPGIYQ RAYEKWKAPTAAEARLIMREN >gi|225002478|gb|ACIZ01000101.1| GENE 21 20706 - 21608 548 300 aa, chain + ## HITS:1 COG:MT2603 KEGG:ns NR:ns ## COG: MT2603 COG1715 # Protein_GI_number: 15842062 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Mycobacterium tuberculosis CDC1551 # 10 298 11 304 306 81 28.0 2e-15 MSYQRRNAGRAILLALQDIGGVASRKQIKKRIADNEETGFTYDDVFEKVAAKSGKEYVPF DFDFNFSLKELGLLGYIEPPQRGQDIALTEKGRASDASLYLSADEAARIADYWQKKSDLR RAKNASQASAKVEPITSDLDSADDNSDTWQAQLISQLKQFSPAKFESFSRLLISKMGVKI DKKMGIVKSADHGIDGFGYFESGEFRTSRVAIQAKRFTDSPVSEPDIDKFKGVMDGFNAE YGIFITTSYFTDQAKAKAVRGNRSVTLVDGQRIAELVEQYRLHITPVQTFTLDDYYFEES >gi|225002478|gb|ACIZ01000101.1| GENE 22 21848 - 22174 271 108 aa, chain - ## HITS:1 COG:no KEGG:LGG_01954 NR:ns ## KEGG: LGG_01954 # Name: lciIC # Def: XRE family transcriptional regulator # Organism: L.rhamnosus # Pathway: not_defined # 1 108 1 108 108 179 98.0 4e-44 MRLQEKVAKRIHELRLSKSMTQEQLAEKANMDVSMLARIERGSRGDIRMSTLERIVSGLD VSYQEFFTFPEDGDETTELASSIALIKDPEVIRALHKIVNTLIQKDNK >gi|225002478|gb|ACIZ01000101.1| GENE 23 22832 - 26434 3042 1200 aa, chain + ## HITS:1 COG:no KEGG:LC705_01945 NR:ns ## KEGG: LC705_01945 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 1200 1 1200 1200 1482 100.0 0 MGTTQRRKFWTALTNNEHKVTLVHSKHHGWLAIGLTFFAMGTAGIALSSQGQVVHASDQQ PATQQTATNQGRVWKVRPVSQIEAQIKASETGSTNYNIQWGDTLSTISEALNHTGFTTSV ARLAAINRIANVDLIYAGAKLSLQGSGDNATVTTQDTSGNNQTFNLNPAKPATLTPAQQA EAKYTVVGGSTGGTSNGGASPAPAVTPNPGSTDKDALQKQLEAIQAAKDKAEAEKAAAEK AQREAEAKLTVLLNNENTETLAQLQAKRTAAQKAVDAAKAKVAATQEKLQAAQTAAQQAQ TAADQTNAAVAAKQAAVDQSTAQVNSVTTQLSDLQNQLNTLADQVKTNPDSQSKVNETKA QLAVAQQKLTSYEGQLADATTALTQAKQTASQAGQKLTAATQAVNAVKNEATTAQNEFDQ AETTLKALPASVTSQNSQEAETVKAQLADLKVKVNQLDTTIDTLNAQIATWQDRLATAQD DAATAQTDLAAAKTKAEKVDTTDHQQTVKAAQTSVADAKKTLPTIYVPKNTDKKVTINKD ENGQTLNNLDGYKLITAGTPVKSVQTSSNGDTITTYTTTNVYHKIAYQTVNKTVNVDQSG NALTNTDGYTKVSVSRQVAESTDPKTGDVTTTVTLTTVWKKTETPTHTTVNKTVNVDQSG KVLTSTDGYTEVSRSSKSEDTKDNAGNITTTVTTTIVWKKNETPTHTTVNKTVNVDQSGK VLTSTDGYTEVSRSSKSEDTKDNAGNITTTVTTTIVWKKNETPTHTTVNKTVNVDQSGKV LTSTAGYTEVSRSSKSEDTKDNAGNITTTVTTTIVWKKNGATTPAIVNKTVNVDEAGNVL TSVDNYSLVNSSKTSKEDPSSSTTTFTTTNVWKKNTDPNETIINKFVNVDDQGHELTSTD GYVYIGGGSATSWLTTSDGHKTTTMTYTSTYHKPQAKTITKEVDVDEGGNTLTDKTGYVK ISSTPITTVSKDPNTWDTTTTITTKNVWRNVEAAGTIIGAIKSVNDATTQLIQTQIEKND RKVSIEQAAQYTDKDLTMAVIKKFNVLINGEQKRTGHVQTSLTSDPKAYEMEAPRAVEVM FKFSHTRPVNAPASGTEAVTYQKGEPYMSRNTENISISSLWKKDVDGSADKLSTLIAEAM FKQYIVDERPENNHGETGGHYQNIINSGYKNIVIGVYVIDEGSYYAASTAVATGNDGTFN >gi|225002478|gb|ACIZ01000101.1| GENE 24 26667 - 27191 427 174 aa, chain - ## HITS:1 COG:no KEGG:LC705_01944 NR:ns ## KEGG: LC705_01944 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 174 1 174 174 297 100.0 1e-79 MKNFESKLIARIFGIQEPIDEHAYAILGRAAIHAVLGILTFELTINVMSFLIPFHSYEDA FYIMSSIQLTGIFLILIATTTLAIRKNGLGKEEVTADAYPAALKRARRKAFLSSIVSTAI FHLLGAILSLREQGFLTSLVDKHRLIQTAIFFVFFTAMILFAVKRNLKIISNDD >gi|225002478|gb|ACIZ01000101.1| GENE 25 27178 - 27381 353 67 aa, chain - ## HITS:1 COG:SP0333 KEGG:ns NR:ns ## COG: SP0333 COG1476 # Protein_GI_number: 15900264 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 62 1 62 64 81 69.0 4e-16 MNRVREFRREKKLSQLALAEKIGVARQTINLIENGKYNPSLELCLKLSWTLGTDLNTLFW REKNEEL >gi|225002478|gb|ACIZ01000101.1| GENE 26 27579 - 28331 631 250 aa, chain - ## HITS:1 COG:no KEGG:LC705_01942 NR:ns ## KEGG: LC705_01942 # Name: not_defined # Def: M10 family Zn-dependent endopeptidase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 3 250 1 248 248 420 100.0 1e-116 MGMKHRNRLFWLILLVAGVFLVYSTESPLPFTTRETVKAGIAQAWTTTTHTVGNWLHGNS SADSSSTSLASSTTSQATSRSASTPAGATSALNIVQGRHLKRTYYYHFDANLPQAEHTVF TNAVRAYNATGIVKLIPGQGKRSDNQITFSSYQKDMSQASLGTTELGEGGPTIIVETLGA QVTVINHARASLNLAYPSQSINAAVAMHELGHALGLDHSQSTDSVMYPVTRGVTQLSDGD IAGLKAIYAQ >gi|225002478|gb|ACIZ01000101.1| GENE 27 28527 - 29369 438 280 aa, chain + ## HITS:1 COG:no KEGG:LC705_01941 NR:ns ## KEGG: LC705_01941 # Name: not_defined # Def: aminoglycoside phosphotransferase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 280 1 280 280 532 100.0 1e-150 MDSLSSVLLAYNLGHVTKTIPMTNGKSSMAWRIETISGPVLVKTVPSTAQALFEFALTQA IQDVDSRLTPAILLTQAQQPFISVNRKIYQVQRFWEHHPSAPTLAAALNCYLKIRKGLDQ FEYDWQPQDPQPLQQLWQKQHPKLQQTQPAIYAHLVSQIESLLLLDQAQEAWVHGDLGRW NLLTMTNRQVGVIDFGQARRGPRFLDFAALYHGFMPRQRVALSVYTERFCCLAGISEGDR LIFLATVRLWLVKGLLVAVDKAPDAIKVFDQACHQVEQLA >gi|225002478|gb|ACIZ01000101.1| GENE 28 29446 - 29844 392 132 aa, chain + ## HITS:1 COG:no KEGG:LC705_01940 NR:ns ## KEGG: LC705_01940 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 132 1 132 132 239 100.0 2e-62 MATIKLSQSFVDLMKKKHFDQKILLLIADDGGGRYSLQGGACSIGTKFTLIVLDEPDPDY QVKLENDAGLQLYTSDYDMIFFASGLAMDFKQGAISIKDDAHAYLDGSVRIAKGSDVLAA FKKGILMSGATC >gi|225002478|gb|ACIZ01000101.1| GENE 29 30307 - 31893 1292 528 aa, chain + ## HITS:1 COG:HI0664 KEGG:ns NR:ns ## COG: HI0664 COG1132 # Protein_GI_number: 16272605 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Haemophilus influenzae # 106 526 117 546 552 115 24.0 3e-25 MQKIMQIGALKKRWLLGLFILRVAIDGFNVAISMLIQLGLTAALAGHTGMLIGVFAGMLA ATVVYTGLYWLSGVVMERLKRRLSVAVARALMASFLAGDAQDVPDAGVATNLLITDTQNV MQFLDSGVLPLVDFGMTVSLGLVYVATQSWQLAVAFIGFGLLFALVSRHLFRRQNQAQTS LIAVDDRHKGFFNNFLANFEPVRNLNVFGYIRQRHQTIFQEAQPAIRQLAGATGALAGIF NGGIYLAEVLTLALGFGLLPLTHQSVAGVLGAWNAGVGSILWPFLGLAPTIGYLAQQRTS LNRILPRLQASSKVQIASTEIDSAQLLTIVGDQVAFHYPHSERQLLRGLNFKIHNRGITF IVGANGAGKTTLMKLILGDLTPTSGQIRLQGSVDKVTPAELMAFVPQRSVMFTASVTANL LLNTEASSPQIRPLLEKLGLGKYAEDLNQILQPAQLSPGEQRRFGIARALLSNRPWLVLD EPFSDIDAANQMAVMQVLRQAAHTHGILMITHTFNFVTSADQIIKVGE >gi|225002478|gb|ACIZ01000101.1| GENE 30 31895 - 33547 1004 550 aa, chain + ## HITS:1 COG:Cj1130c KEGG:ns NR:ns ## COG: Cj1130c COG1132 # Protein_GI_number: 15792455 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Campylobacter jejuni # 355 549 367 564 564 128 35.0 2e-29 MTELKQFWHLFSTRIVPVLWIIAMICAAIEFGLARLIQRLTQRGALTMPLMMMAVVAAGV IGGGRWLIARWQTQAHYQLTQTLQSRLMAALMNGPVAVDLEARNERLNSLTTEAPLAAPL FIKSVTAILVGLLSFLAASLFGWLSSWPLMLIIIGLCLTALLIPKVMAGRLTQAQDTQQS ENARMQAALLEILAGRMLLKDYQKEQFGLQLFSRTYQSFANSQYRMGLQQTGTIVMGFAL GLFVDIVILGVELLFVGFKFISIGQFAAFAMLTPSFTWLFYSMPDQYAQLSRNLVAAKRI FGLIVPLQAASRNVAAESQEAPSAHQPKNSVQQLLLKHITYTYPDASRPVLAQLDLKLNV AAHEKILITGPSGGGKSTLIRIILGLLSPQAGSVQIEPATLEAPRQLAHIIGFVPQVVAL FDDTLRQNIALDRNVSQTALSEVLVQTDLQTFVQRLPEGLATPLHGQTRANVSAGELQKI GLARALLARRNVLVLDEPFANLDAAAAKSLSQRLRQLPVALIVISHRQDVEQFWDRALQL EHGRLNEAKL >gi|225002478|gb|ACIZ01000101.1| GENE 31 33613 - 33876 241 87 aa, chain + ## HITS:1 COG:no KEGG:LC705_01937 NR:ns ## KEGG: LC705_01937 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 87 1 87 87 111 100.0 6e-24 MFNWLILGHIVFGLIAFVGSLLLALGFRTSFASLTAMQQWGIGLSIGGLFATMAFVMFTA ANIVPALLFIGAGLALLWILFHQRAKA >gi|225002478|gb|ACIZ01000101.1| GENE 32 34845 - 36515 1416 556 aa, chain + ## HITS:1 COG:CAC3632 KEGG:ns NR:ns ## COG: CAC3632 COG4166 # Protein_GI_number: 15896866 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Clostridium acetobutylicum # 1 556 1 563 565 228 33.0 2e-59 MKKHHLLTALITGVALATLLVGCGGRSGSASGNAQTLNLTEEDDPTTLDVNDMRNANEND ILSEVQEGLTTIESANGKDKVVLTGAKSYTKSADGLTYTFKLRDAKWSDGKAVTAQQYVD SFRRLLKKKNAFSQATNAYFIKGAEAYNTGKGSAEDVGVKAINKKTLQIQLAYAYPSLLS DMASVIYYPVRLDKINQVGNKKWKTDVKDQVFNGPFKLTSWKKNDKITLKKNPSYWNAKK VKLQTVTYTTTSKPSTVLSLMQSGQLDALSASGKQIADFNKLAKSNKLTSRTQDGAGTTV LIMNQHNGGTQGLFKNTKVREAFSLSINRNDYNKAVSDGQDKLTYTMAPQTLNVGSTNYG KYVGNPLKEAQAQYNTKAKRQALLKEGLKELGKSTDLSKLNFVYLTVGSDDTGTWLKQAI KQQLGVKVTIKTAPDDASFVQLRNKNQYDLLGNGWLATADPNSYLSLWNSNNGFQKFFGG YSSKTFDALDNKLNGNLTTKERLALYKQLETQLVAKDFGVVPLTNPQSRIYINKSVKNLQ TTVFGGTFNYTYASKK >gi|225002478|gb|ACIZ01000101.1| GENE 33 36619 - 37569 947 316 aa, chain + ## HITS:1 COG:CAC3631 KEGG:ns NR:ns ## COG: CAC3631 COG0601 # Protein_GI_number: 15896865 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Clostridium acetobutylicum # 1 316 1 308 310 232 40.0 8e-61 MIKLIIRRFIELLISTFLIATATFFLISAVPGDALSAQTDKLPEATREQVYKNTGLDKPV LERYAITMNNMVHGQFGESISDPSVTMSSLIRDRLPASARLGIQQMLLGIPLGLLLGILA AVYKNTWIDRVITILALFLMSIPSLVLGLLLQSYFGGKLGWFPIIGWPSGDQTWWGGWIY TVLPTIAGGIGYIAGYARLLKNSMVDVGSSEYVMTARAKGLSEPQIVLHHIVRNASIPII TSLPVTLAFGITGSVFIESIFVIPGVGQYFVTALNNRDVPIIMGETVLLAILYIVTMFIT DLLYTLADPRIKLYDN >gi|225002478|gb|ACIZ01000101.1| GENE 34 37584 - 38540 806 318 aa, chain + ## HITS:1 COG:BS_dppC KEGG:ns NR:ns ## COG: BS_dppC COG1173 # Protein_GI_number: 16078359 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus subtilis # 27 317 26 319 320 209 41.0 5e-54 MAASDTDFHFVQASGNFSTPTVLTEPDQVATIEANAPKSISFWASARQKLLKDRLAVAWG IILILIVLAALIGPQIQHYDPNLIRVNSRNVGPSAAHWFGTDRLGRDLFTRTCIGVQVSL MVAILSTFLAIGFGTIYGMIMAFFGGWVDEILMRIIEVFNSLPGLLITMLIMVVLGNGMW TMLFALAVTSWSGSARQARGLVMQLRGLDYVTAAVMLDTPLWRIMARHLVPNMMSILILD IGQSIPDNIFGEASLSFLGLGIQAPNTSLGILIANGQDQMLQHPLQLYIPILILIAIVFA FNILGDGLRDALDPKFQD >gi|225002478|gb|ACIZ01000101.1| GENE 35 38642 - 38950 424 102 aa, chain + ## HITS:1 COG:no KEGG:LC705_01932 NR:ns ## KEGG: LC705_01932 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 102 1 102 102 148 99.0 5e-35 MIQKHPWQVITALFVGLFVTTTGFSLTHEPVLVALLWGLHQTFWMLVGLALLAVGIKLLL HTRRPHAALTSRFLGSLPGNGQLALVAAINLLGGALIDLYLY >gi|225002478|gb|ACIZ01000101.1| GENE 36 39023 - 40087 1093 354 aa, chain + ## HITS:1 COG:lin2297 KEGG:ns NR:ns ## COG: lin2297 COG0444 # Protein_GI_number: 16801361 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Listeria innocua # 1 351 1 352 358 362 50.0 1e-100 MTDIVSIKNLNVTFHEANENVYAVNSVNLTLHQGETLALVGESGSGKSVTTHALLGLLGK DAEVKADVMRYGDTDLLHASKKAYTHLRGQELGLIFQDSLSGLNPTMRIGRQIGEGVKAH QHLHGAALKKAVYASIQDVGLDDPALIARKYPHELSGGQRQRAMIAMALIMHPKVLVADE PTTALDVTLQAQVLDLIKTQKAKHDLSVIFITHDLGVVANIADRVAIMYAGKIVEVGTAN EIFYNPQHPYTWGLLDAVPSSDDQREQLFTLPGTPPDMRKPITGDPFAPRNPYAMAIDFK EAPPLFQVSPTHFVRSWLLDPRTPSYQPPVTIQKRWERFADMTEKPQTIVASQA >gi|225002478|gb|ACIZ01000101.1| GENE 37 40108 - 40998 337 296 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 5 251 8 260 563 134 32 2e-30 MTAPLFTIDDLSVTFHKGRQPIKAVDHISFTIEPGTTVGLVGESGSGKTTTGRAIAGIGP ISGGNVRFLDQSIQHFSRTERKQFRRQVQMVFQDPFASLNPRQKVADIIAEGIDNFHLAG SHQERMDQVLQLLAQVGLPPDAINRFPHEFSGGQRQRIGIARALAVQPKFLVLDEPISAL DVSIQAQIVNLLRRIQKEQQLTYLFIAHDLSMVHYISDKIVVMYRGRIVEAGATEAVYRH PLHPYTQTLLASVPQADPIFEQQKTHVQFDHEPIAPTANLVEAAPEHWVLAAQTEA >gi|225002478|gb|ACIZ01000101.1| GENE 38 41389 - 42093 264 234 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 229 1 223 311 106 31 5e-22 MNEVVVVKNLKKEIELAQGNVLEVLSDISFEIKQGEFVSIVGPSGSGKSTLLYCISSLLP PTEGEVLIKGKSPYEWSASKLAKFRRQEIGFIFQDYQLIPSLSAFDNLMLPGILNGRKIE KSSVEAIATRLELKVELNQPIDALSGGEQQRVAIARTILANPEIIFLDEPTSALDTHSRK LTMGLFHELVGQGKTIIMVTHDLELAEKTSRTIVMRDGKIERDIELTQFNTVTI >gi|225002478|gb|ACIZ01000101.1| GENE 39 42112 - 43488 585 458 aa, chain - ## HITS:1 COG:no KEGG:LC705_01928 NR:ns ## KEGG: LC705_01928 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 458 1 458 458 788 100.0 0 MNRVVTKLFIKHWRIWLAVTPIFIISGIVFGAAIVLLSALSSADASSGVDYGVFLQVPIV IGGVILCLFTNNAMKQCIDFFDDTNDILLMLGASPIQLSFLMTGQMLLTGIIGASFGILF VVPAARGFLRLLPIGAGSQSLSSLPIALTGNTIGIVLLIQTVLISMTCMRYCLKNYRRRK GRVSTDREEGKKNGGMVIGTLAIIGCIVGTVLLFLKAIPDPSSVADYTNSMKNAMNLLLL LWLLLIVAMNFLIRPLFIKMVKMVAHLPSITKHPLIRSAFYDLQFHQENMIKLIRPVSVI ALLIGNFIALFLNTKMLVDGRNDESAIYDLIVSLVFVFGAPILISLANIVTSISLFKMKT QKETDNYFFTGCTPSWIFELKLTEIGTAAILSILITFLGTLLFAIPLLRVAFLGGGDIFR ANWTVNILLTLGIFSLFFLCFAPIYWLEKGKRKAYVNG >gi|225002478|gb|ACIZ01000101.1| GENE 40 43618 - 44331 667 237 aa, chain - ## HITS:1 COG:no KEGG:LC705_01927 NR:ns ## KEGG: LC705_01927 # Name: not_defined # Def: ABC transporter permease # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 237 1 237 237 390 100.0 1e-107 MTNTWTMAKVLTRQRFKTAVNTFIVTIVAAVITVILVYLAGSPKLSPQFIYSMLSPYVLF GTIYLFIRLTIKQEHTWVNNYYRAVPITNLKLYAANLFSTAVNFACYSLAEGLVLGGLEF SGRGMHLPAASAWPEIIEGFIIIALTCLFIWAFVSLVHMLSVTIMAFLPETRIRIVQWGI YLVVIVIASYLFNQLQRLLFMPLHTYNFGAVIAVFLIIFTLISAINVYLLEKWVETK >gi|225002478|gb|ACIZ01000101.1| GENE 41 44324 - 45040 616 238 aa, chain - ## HITS:1 COG:BH0382 KEGG:ns NR:ns ## COG: BH0382 COG1131 # Protein_GI_number: 15612945 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 5 232 1 229 230 130 33.0 3e-30 MTTSMISAEHLTYKRNRHLILDDLNLNVHQGHFIGLLGANGAGKTTLMRLLNGLATNFTG TIQIGASESIVDRKQLSNFSESLKGVNASRTLQQIAIDYAMMYLDFSEKAFAEFTTEYEL DLHQKLNALSTGNRKKFIAALTLARETQLYLLDEPFEGIDSMTRKRLISNMIAWKPDAAT VIISDHHVNDIVNILDEIVVLKDKHIVAHKNTEQLRAETGMSVEAYYESLYQGGKSND >gi|225002478|gb|ACIZ01000101.1| GENE 42 45030 - 45407 377 125 aa, chain - ## HITS:1 COG:SP1714 KEGG:ns NR:ns ## COG: SP1714 COG1725 # Protein_GI_number: 15901548 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 3 116 5 118 121 83 37.0 9e-17 MEFDDKVPIYFQIKQYLYQAIITDRLKSGAQLPAVRQLAAELTVNVNTVQRALSELIQEG VLVTRRGRGNFVTDDIKVLIDMKKRVIGSELDHLYRQLADLNLTADEMKDAFSQYVDEQE EHHDN >gi|225002478|gb|ACIZ01000101.1| GENE 43 45577 - 46431 721 284 aa, chain + ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 44 277 47 286 289 128 33.0 1e-29 MTKKRGKVLLIISIFLVVSGGAWLWLNRGVTPSTKRVAGTYQTPTIFVHGFGGGYGSEKD MINDLSKHPGFRQVLRYTVTNTGQLSVSGSWSPSIRHPLIAVVFSSGRPDAPTLDKILKQ VKKRYGVKAFNAVGHSAGSTAWAEWSLMPDKKGTPALEKLITIAGPFNGFPGMGGMNSGL DIKLASDGRPSTMSDRYKPMYEHRQYFPKTAAVLNLYGNLGKGSDGRVPVNSARSLRYLV ADRAKSYTEREITNSKAQHSKLHEHNPLVNRYLYEFLSTGKINH >gi|225002478|gb|ACIZ01000101.1| GENE 44 46535 - 47566 974 343 aa, chain - ## HITS:1 COG:CAC3472_1 KEGG:ns NR:ns ## COG: CAC3472_1 COG1396 # Protein_GI_number: 15896711 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 118 1 118 125 86 37.0 6e-17 MHLNQIIRTKRLAAGLTQEALAQKVGVTSPAVSKWEKGISYPDITLLPILARNLNTDVNT LLDFSADLDPAALRRFYTKLTATAQKDGWKAAVALVDEELREYPSVPQLQMMVPAFLQGL KSDIPTNEWPAVRERIIQLYQASERPHSSLPEAQIAAEGLFQFFLSEHEFDAAEKQLQNL PSETVAYQALKLKLQLSQGQFDKAYVDGEQLLTSDFSALTIVLNLLTQVAIADHQLATAQ LYVDTLLKFDAVFNMYSPWAIDSQLRLAKAANKPKEAIAILQKSIDKIDRKIPAVLKHLP KLQPIASLTEAQKQLAQSFAADPELDYLKDDPEFQKLIHQFDA >gi|225002478|gb|ACIZ01000101.1| GENE 45 47679 - 48416 625 245 aa, chain - ## HITS:1 COG:lin0630 KEGG:ns NR:ns ## COG: lin0630 COG0730 # Protein_GI_number: 16799705 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Listeria innocua # 4 244 8 246 246 58 27.0 1e-08 MTIILVLLGFLVGAFIMTMGGGGGAFYLGIMTGVAHLSPSTAAATSLFTAIPALAVGCYS HYRTGNMRFHAGNRILLTAVPATVVGSLAAPYIPELVYSWSIAIIFMVLGVQMLRQSFGR KAKKTTQPAWFAYVLGMISGLMVGVAGLSGGGPIMAGLMLMGLDMPHAAATSSYALVALS IIGCFLHATQGKIAWTVGGLLMLGSLVGAAITPRILNRFDPRKLTAILRPLLGLLLVVMA IEQVW >gi|225002478|gb|ACIZ01000101.1| GENE 46 48763 - 50166 979 467 aa, chain + ## HITS:1 COG:L180636 KEGG:ns NR:ns ## COG: L180636 COG0477 # Protein_GI_number: 15673521 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 18 456 20 448 457 245 35.0 1e-64 MTKTTIEAKEQNTRHALFVITIVALMSFFGVLTETSMNVTFPTLMHDFHVSLTTVQWVTS GYLLAAALVMLSSAYMKRRFTNRQLFITAALLFIIGDLMCALAPVFWVLLIGRLVQAGCV GLCGPLMVNIILDTVPTSKLGTYMGVANLIILIGPALGPTFGGAVANFFDWRMIFWSTLP FALLLLILGQGRIKQYTHTSAFAFDWLRFAALGVALISLTVGLNGVSDRTWALAGVAGLV VVVAMLVFLWLSKHHAKALFKLDVFHDAGFLYSFLPYILLQFSNVGINFLLPNYVQTVDG ASAFVGGLILLPGSVFNGLGQPVYGWMLDHFGGRLPLLLGNSLFTLGMLGFTIWGRHISV LWVTVLYLIFAIGRSMAFGNSTAYGLKVMAHQYQSDANALYSTGQQVTGSIGTTVLAGMM TAVTVPGLTHAQNVGIGSQLAFGLLLLIGLVNFGLYLRLFKATKSQD >gi|225002478|gb|ACIZ01000101.1| GENE 47 50314 - 50946 589 210 aa, chain - ## HITS:1 COG:lin2076 KEGG:ns NR:ns ## COG: lin2076 COG1309 # Protein_GI_number: 16801142 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 9 206 3 196 206 68 24.0 7e-12 MKNVVNDPQKVTRILATATTAFGQQGFAKTKTDDIAATAGVSKGLIFHYFGNKQDLYLDT FKTAYHRIYDHMNPHKWQDAPGLAAMMTQAVKYEMQLQLKFPDEYRLMMQAYADLSHFPK PLQQQIQQETQAISAEANRIFRQKIEQLPRRDGVSVADIFSVVSAVIAQQTATTTRMIAT GHYRNFDDLQVVVDQMDRQLKIIEHGFLPD >gi|225002478|gb|ACIZ01000101.1| GENE 48 50943 - 52559 1439 538 aa, chain - ## HITS:1 COG:BH1004 KEGG:ns NR:ns ## COG: BH1004 COG3559 # Protein_GI_number: 15613567 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative exporter of polyketide antibiotics # Organism: Bacillus halodurans # 25 537 26 533 534 209 28.0 1e-53 MRHNNRHAGYLFQANLKQNFKFSGIWLVILIMMIISGAAKLEAAFANGTAGAKDIVKMLQ APGMAAMFGATPKVVTYNSAIIFAGVMVVFMIILQALWVMPLMIRDTRGQEESGLLEMVR ARNVGRTAAVTAAIFELIFSSLVMGLTYLISLVAIKMDGATLAGDLLFALGMVVANFVFG TIVLLFSQLANNSRTASMLSYMVLMIAYLMRLVTDINHQQLTWLSPIGWFEKANFYTDNN PVPLLLGLIVSALLAGVAVMIAQTRDLGTGIIAENGGRPRAANWLRSMPALVWRTERGLL AGWLVGAVVFGGVMGSVLGGVGDILKTNPIYRKLLDVSQINAANQTMVLSFLAMYMGIFV ALAVTAGVQIAFRLKHDDQHGYLSIIHAEKPTRILISASYNGMALLAGVLVLTVGLLALF FTGNQVLSHPLPAKYLGRLFIGGIPAVLAFIALGIALSGLWPRLSNLFWLYMGAGLIVQV FRGLFDLPKHAADFTPFGWIADVPLKTLAQPWLPVMLISAIILVILGMAGYRRQDLSV >gi|225002478|gb|ACIZ01000101.1| GENE 49 52546 - 53463 279 305 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 247 7 257 318 112 31 9e-24 MTTNVIELDHIQKRFGKFEALKDVSFTLASGQVLGFLGPNGAGKSTTIRIILGLLKKTSG SVTVFGKDAWHDDAAIHPRIAYIPGDVYLWPNLSGGEIIDLLLRLNGRTHNQKTDELMQR FEFDPKKKARTYSKGNRQKVAIIAALSQDADLYIFDEPTSGLDPLNEQTFQQEVLKLKQA GKSVLLSSHILSEVERMCDSIVIIRDGSVIESGNLAQMQHLSRLRVEVTSTTALDSLTQS TGIHELTFPERQHTKAIFTADRDDLSAIMQTLASHAILDLQVTPPTLEDLFMRYYEKEGA DHAAQ >gi|225002478|gb|ACIZ01000101.1| GENE 50 53769 - 54524 617 251 aa, chain - ## HITS:1 COG:lin0323 KEGG:ns NR:ns ## COG: lin0323 COG0778 # Protein_GI_number: 16799400 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 4 247 2 242 245 155 35.0 8e-38 MIPNETIRHQLHHRSIRQFKPEQLSQQTIRTLLDVAQHTASSMYLQLFSVIHILDPQIRA KIAEISTQGYLNGPGELFIFIADLNRVATLTAAANHPLDRVGRMDKFLQASADATLALQN MVVAAESLGLGTVTLGSIQNDAQAMIDLLHLPKYTFPLLGLAVGLPADQPDEKPRMPQSL VAFTNHYGEPAPKADVLSDYDQTVHNYYATRHGSHRKETYTDLAVSAGSYTPAKRADLFD VMRHQGFFPES >gi|225002478|gb|ACIZ01000101.1| GENE 51 54633 - 55478 659 281 aa, chain - ## HITS:1 COG:no KEGG:LC705_01916 NR:ns ## KEGG: LC705_01916 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 281 1 281 281 518 100.0 1e-145 MKKRKQAVKKMVAENNELRKQLTKENRDYYENLLTYLRGKSFLRDDYQVEQNLLTILQDL IDAQADGVEAAAYFGQNPEATANDLLKTIPFNLADFFWFNLKLVFMMFFILWIPKLANPV MTLDIGMTFLCGVIAIIGSWCFVWLLGGSAFAKHTRIQIFSLIVFSIIVFAVMFFVSIFV KTGWRITLPSQVSLAVIVLGLVIIVIFPFVQHLNEFNIFFYLYVAFYFVLGLLLRLPQTK PFLTAKVNLGPWKWVVIIGLVLFSLAIGGLVYRFYQRRHPD >gi|225002478|gb|ACIZ01000101.1| GENE 52 55610 - 55948 305 112 aa, chain - ## HITS:1 COG:SP0789 KEGG:ns NR:ns ## COG: SP0789 COG1695 # Protein_GI_number: 15900682 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 7 103 4 100 106 94 45.0 6e-20 MAADANSQMLKGILQGCLLILLARKEQYGYAISESLDLFGFGDVPKGTIYPLLMTMEKKG LLVSHMRPSPDGPQRKYYAVTPLGETARQTFMVQWSELKDHVEQLIADQPEE >gi|225002478|gb|ACIZ01000101.1| GENE 53 56180 - 56797 585 205 aa, chain + ## HITS:1 COG:mll0243 KEGG:ns NR:ns ## COG: mll0243 COG2085 # Protein_GI_number: 13470516 # Func_class: R General function prediction only # Function: Predicted dinucleotide-binding enzymes # Organism: Mesorhizobium loti # 1 183 1 187 231 112 41.0 3e-25 MKIGMIGAGDVGQVLTQLFVRAGNTVMLAHRGSVDALDDLARVLGAAAGTVEQAEAQDLV VLAVPFFAIKALPLPTGNDPIIVDATNYFPDRDERIPEIECHQKATSQMVAEHFHSHRVV KAFNSIEMAVFAQLARPNRSVDRIALPYAGDDPQAKKQVAALIWAIGFEPFDLGDLGASL AAQADGSLFLVNETAPVLRQHLHQS >gi|225002478|gb|ACIZ01000101.1| GENE 54 56802 - 57308 289 168 aa, chain - ## HITS:1 COG:SA2454 KEGG:ns NR:ns ## COG: SA2454 COG0454 # Protein_GI_number: 15928247 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 10 163 8 161 166 133 40.0 1e-31 MKLNFSAARMSDLDAIMRIEHAGFTPQEAASRISMAARITNYPDTFIVARVANTIVGYVV GPATFKPTITDDLFTDSQPNQPAAPYLAILSLAVAPNMQHHGIGRQLLAKLTQVAQLQKR TALTLTCLSRLIPFYEHVGFHNDGLAASTHAGEVWFNMSKPVKPVAKI >gi|225002478|gb|ACIZ01000101.1| GENE 55 57361 - 57915 299 184 aa, chain + ## HITS:1 COG:FN1102 KEGG:ns NR:ns ## COG: FN1102 COG1859 # Protein_GI_number: 19704437 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNA:NAD 2'-phosphotransferase # Organism: Fusobacterium nucleatum # 6 177 5 177 179 121 35.0 7e-28 MEKQLVKISKLLSFILRHHPERLGLKLDAYGRVDLDTLIQRFNAHYQVHLDRQVLAAMMR QSDKRRFALEDNRIRAVYGHSVPVLPLMPASKPPTWLYHGTSHQAAIMIESEGLRPMNRD FVHLSSDLDMAKQVGSRHDAHPVIFRIDALAAFTAGALFYPTGSRVWLTGKILPKFLTRM PTSG >gi|225002478|gb|ACIZ01000101.1| GENE 56 57999 - 58256 352 85 aa, chain + ## HITS:1 COG:no KEGG:LGG_01922 NR:ns ## KEGG: LGG_01922 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 85 1 85 85 148 100.0 7e-35 MKADSPDDLRLNPKQFANLVVGSHQVPDDKDPETIVKRKLTLYLTAYYLAERFNELQEET LSHSPSRENFNQLLKKLEEERFQDW >gi|225002478|gb|ACIZ01000101.1| GENE 57 58538 - 59887 1392 449 aa, chain + ## HITS:1 COG:SPy1180 KEGG:ns NR:ns ## COG: SPy1180 COG2851 # Protein_GI_number: 15675152 # Func_class: C Energy production and conversion # Function: H+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 1 448 2 468 468 560 70.0 1e-159 MLLTVIAYAMIIVFMYVIMTKKLSPFTSLVMIPLLFAIIAMVAGVAKKGTIGDFVLKGLT TTANTGIMLLFAILYFSIMLDAGLFDPITARMIKIAKGDPMKVLMATAIVAMAVSLNGDG TTTTLICCSAFIPIYKKLNMNMMNLGVLIILQNTIMNLLPWGGPTARAMAVLKVDADILT YLLPGMILALAYVIFYVAPHMGRAERKRLGVRELTDEEIDEMTSVVDPEVSEIRRPNMFL FNGILTIVLIAWLVASSFIKAIAMPPLLLFLVGTCIALMANYPKLGDQSKRIGANGGDAV QVVILVFAAGVFMGLFQGTGMAEALAKSFTAIIPNSMAGFWGLVIALISAPGTFFLSNDG FYFGVMPVLATAGRAYGFTNMQMALASLMGQAFHLLSPLVAFIYLLLRLTGLDMGKWQRE AGKYALGVFAIFVVTVMLFGHVPFYLPQK >gi|225002478|gb|ACIZ01000101.1| GENE 58 60282 - 60605 372 107 aa, chain + ## HITS:1 COG:no KEGG:LC705_01908 NR:ns ## KEGG: LC705_01908 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 107 1 107 107 178 100.0 6e-44 MFGWLHRKKQPPQTPVEPTTKKVAAPVETTQWETVPNFLEVDPKTELTASLIAAAVTADS APDAKLVLKHLYVENPEAKRVGLIASAIAAGDGDAQYVVKSIKKKVD >gi|225002478|gb|ACIZ01000101.1| GENE 59 60611 - 61018 376 135 aa, chain + ## HITS:1 COG:SPy1183 KEGG:ns NR:ns ## COG: SPy1183 COG0511 # Protein_GI_number: 15675154 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pyogenes M1 GAS # 1 134 2 131 132 92 55.0 3e-19 MLRKFKITIDGKTYLVEMEEIGGTPAAAAPTPAPAAAPTPAAETPAPAPAAPTPAPATPA AASGEGEVVTAPMPGTVTKVLVKSGDAVTENQPLMILEAMKMENEIVAPKAGTVGDIIAT LNQSVNSGDGLISII >gi|225002478|gb|ACIZ01000101.1| GENE 60 61033 - 62157 1245 374 aa, chain + ## HITS:1 COG:SPy1184 KEGG:ns NR:ns ## COG: SPy1184 COG1883 # Protein_GI_number: 15675155 # Func_class: C Energy production and conversion # Function: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 372 1 372 373 520 85.0 1e-147 MEALIHGITTITLGQIAMMLIGALLMYLGIKKEYEPTLLVPMGLGAILVNFPGTGVLTQV VGGTKAEGVLDVLFKAGINTELFPLLIFIGIGAMIDFGPLLQNPFMLLFGAAAQFGIFAT VFVAVFFGFNIKEAASIGIIGAADGPTSIFVSNQLAPNLLGAITVAAYSYMALVPIIQPM AIKAVTTKHERRIRMTYKAEGVSKTTKILFPIIITVIAGFIAPISLPLVGFLMFGNLLRE CGVLDRLSNTAQNELVNIVSILLGLTISVKLQADQFLNIQTLMIIAFGLFAFIMDSVGGV LFAKLLNLFRKEKINPMIGAAGISAFPMSSRVIQKMATDEDPQNFVLMYAVGANVSGQIG SVIAGGLLLSFFGA >gi|225002478|gb|ACIZ01000101.1| GENE 61 62224 - 62367 277 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|199598470|ref|ZP_03211888.1| ## NR: gi|199598470|ref|ZP_03211888.1| hypothetical protein LRH_09093 [Lactobacillus rhamnosus HN001] # 1 47 1 47 47 70 100.0 4e-11 MKFDPTAVEQAGELMLVGMGGVFIVLFIIYIVAKLLLKFAPADKAAK >gi|225002478|gb|ACIZ01000101.1| GENE 62 62369 - 63373 985 334 aa, chain + ## HITS:1 COG:L0038 KEGG:ns NR:ns ## COG: L0038 COG3053 # Protein_GI_number: 15673170 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Lactococcus lactis # 32 333 26 332 346 228 44.0 1e-59 MATLKRIWFDLNPQEKTAWQTLLRAAELTPDEHVDFTVGIFEDGALLATGSLAGNIIKEV AVSPDAQHENLLAQIIQALLDRLDDEAITHSFVYTKPSTKKFFESLGFKQLVATDTVVLL ERGYPNFADYTALLEQHQHSGQPVAAIVMNANPVTRGHAYLIEQAARDNAVVYVFVLSAE RSLFTAAERLGLVKKIASRWANVVVLPTADYMVSNTTFPSYFLKDQADAAIASAQAGLDA ALFKQRIAPILDITRRYVGEEPLSPVTAIYNRQLAATFGDTIELIVVPRLQIAGEVVSAT RVRAAIAQQDWKTVQQLVYPEVYTEIKERSTHEN >gi|225002478|gb|ACIZ01000101.1| GENE 63 63363 - 63668 437 101 aa, chain + ## HITS:1 COG:SPy1186 KEGG:ns NR:ns ## COG: SPy1186 COG3052 # Protein_GI_number: 15675156 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Streptococcus pyogenes M1 GAS # 1 99 1 100 102 95 56.0 2e-20 MKINHPGTAGTLESSDIQITLAPAADGITIQLQSSVEKQFGEQIRAVIKATLAKLAIENV AVEANDKGALDCTIKARTIAAAYRAADNKTFDWEEINAWIN >gi|225002478|gb|ACIZ01000101.1| GENE 64 63656 - 64534 1040 292 aa, chain + ## HITS:1 COG:SPy1188 KEGG:ns NR:ns ## COG: SPy1188 COG2301 # Protein_GI_number: 15675157 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 289 1 289 295 365 68.0 1e-101 MDKLRRTMMFVPGANPGMLRDAPIYGADAIMFDLEDAVSLKEKDTARMLVYSALKTFDYS SVETVVRVNALDAGGDQDVEAMVLGGINVIRLPKTETAQDIIDVDAVITAVEAKYGIKNG TTHMMAAIESAEGVLNAREIAQASPRMIGIALGAEDYLTSQHTHRSADGAELSFARNFIL HAAREAGISAIDTVYTQVDNEEGLRHETELIKQLGFDGKSVINPRQIPVINSVFAPALAE VQKAREIVAGLKEAEAKGAGVVSVNGQMVDKPVVERAQYTIALAKASGMEVD >gi|225002478|gb|ACIZ01000101.1| GENE 65 64534 - 66066 1421 510 aa, chain + ## HITS:1 COG:SPy1189 KEGG:ns NR:ns ## COG: SPy1189 COG3051 # Protein_GI_number: 15675158 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 510 1 510 510 803 81.0 0 MVKNKLNREISEPYADQYGVYGGEFANIQPYDEHARHIKPVKPDHSKLVASIHDAIVATG LKDGMTISFHHHFREGDYVMNMVLAEIAKMGIKNLSIAPSSIANVHEPLIEHIKNGVVTN ITSSGLRDKVGAAISSGIMKNPVVIRSHGGRARAIARGDIHIDVAFLGAPSSDEYGNING TKGKATCGSLGYAMIDAKYADQVVAITDSLMPYPNTPISIPQTDVDYVVQVDAIGDPTGI AKGATRFTKNPKELKIAEYAAEVITKSAYFKNGFSFQTGTGGSSLAVARFLREAMLQQHI KASFALGGITNSMVELLKEGLVEKVIDVQDFDHPSAVSLGENADHYEIDANMYASPLSKG AVINQLDIAILSALEIDTDFNVNVITGSDGVIRGASGGHSDTSAACKMSMVIAPLVRGRI PTIVENVNTVVTPGASVDVVVTEVGVAINPARSDLIEMFKDLKVPQFSIEALKNMAYQIT GTPAPIQYGDKVVALIEYRDGTLIDVVHNV >gi|225002478|gb|ACIZ01000101.1| GENE 66 66047 - 66607 442 186 aa, chain + ## HITS:1 COG:SPy1190 KEGG:ns NR:ns ## COG: SPy1190 COG3697 # Protein_GI_number: 15675159 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Streptococcus pyogenes M1 GAS # 5 178 1 175 192 116 35.0 2e-26 MWCTMFKLSVLDGPQVDLGQMLAAKDARMTKEYDWLKANPDTTLLHVTLRIPGPVKTGKR VVTVFTAAMQALQDQLQPNVQGMQIESLPTGPEAYLAVHMDPVSLKRRMIGFEQQQRFCD LLDLDVVTLQGEELHQVSRTDFKLPPRACLVCGGDAKACARSRRHGLPEVQAAVEAIIKE GWTTHG >gi|225002478|gb|ACIZ01000101.1| GENE 67 66600 - 68003 1273 467 aa, chain + ## HITS:1 COG:SPy1191 KEGG:ns NR:ns ## COG: SPy1191 COG5016 # Protein_GI_number: 15675160 # Func_class: C Energy production and conversion # Function: Pyruvate/oxaloacetate carboxyltransferase # Organism: Streptococcus pyogenes M1 GAS # 5 463 8 466 469 672 70.0 0 MAKQKVQFMETVLRDGQQSLIATRMPSSDILPILDKMDAAGYHALEMWGGATFDACLRYL NEDPWERLRKIRQAVKHTKLQMLLRGQNLLGYKNYADDVVADFVTKSVENGIDIIRIFDA LNDTRNLKTALEATKQAGGHAQLAISYTTSDFHTIDYFIKLAKEMADMGADSIAIKDMAG ILTPQKAFDLVSGIKQEITVPLEVHTHATAGMAEMTYLEAVRAGADIIDTAVSPFAGGTS QPATESMLVALQDLGYPTDVKLAEVSDIASYFAPIRDQFRDAGQLNPRVKDVEPKSLIYQ VPGGMLSNLLAQLKDQGQEALYGDVLKEVPRVRADLGYPPLVTPLSQMVGTQSLMNVMSG ERYKLIPKEIKDYVRGLYGRPPVPISPEMKKKIIGDAPVITTRPADLIEPQLPTFRKAIA EYAHSEEDVLSYALFPDQAKDFLGRREDPFYDVPVQKVSLTFDPTHN >gi|225002478|gb|ACIZ01000101.1| GENE 68 68181 - 68876 734 231 aa, chain + ## HITS:1 COG:SPy1179 KEGG:ns NR:ns ## COG: SPy1179 COG1802 # Protein_GI_number: 15675151 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 229 1 229 231 223 55.0 3e-58 MNQVVSAVKKNLDLSQNRPIKEAIYEALRKTILLGEIPSGERINEKNLSENLNISRTPIR YALERLDEEDLVERKTGVGVLVKGISINDAYEIFDIRKELDVLATRKAMRLMTPEQFNQM RTLLEETDRLNAAGRVAEVMAKFTEFNNFIYDASHMLRLKMIVNQLQNYLIYFRDISING DDRRNLAIQEHWLLYRGMLNQDDDQIKLITREHLEHSLHYILKVMKAKHIE >gi|225002478|gb|ACIZ01000101.1| GENE 69 68869 - 69729 676 286 aa, chain + ## HITS:1 COG:SPy1178 KEGG:ns NR:ns ## COG: SPy1178 COG1767 # Protein_GI_number: 15675150 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Streptococcus pyogenes M1 GAS # 5 278 8 293 294 176 39.0 6e-44 MNEQAIAQAAVTSLQAEVQLAPKPGLVDPESNGAHRDMDVTTFAASIEALTPYFQQYFHA GVVAKTVPDLYRQLRAIGIAAENAMLAATAGVNTHRGANFSFGFLLGALGWLMQQQSLQQ IVTADFAPLFPTVAQVTQGVAGDFRDLEKKARWSHGEALYVKHGVTGVRGEALAGYPTIR HVILPYLRKTARRGDMRYLRLMVHLMAQVEDANVLHRGGPKGLRFVQDAAKTLLHVPDSH LPHALRQLNAEMITFNLSPGGTADYLSLAYFFDALTSLATTNSQPD >gi|225002478|gb|ACIZ01000101.1| GENE 70 70467 - 70778 245 103 aa, chain + ## HITS:1 COG:no KEGG:LC705_01897 NR:ns ## KEGG: LC705_01897 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 103 1 103 103 181 100.0 5e-45 MNEKQVVIAKMLELQHLFEKQPDGISQKVVSNIRQTIGKLASNKTAAIDISAQVRPISRL IRDEMLEHNYNLTLEQRTLLFDLEGKAQDIENKFQTAADWILF >gi|225002478|gb|ACIZ01000101.1| GENE 71 71083 - 71481 439 132 aa, chain - ## HITS:1 COG:no KEGG:LC705_01896 NR:ns ## KEGG: LC705_01896 # Name: not_defined # Def: phage-related infection protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 132 1 132 132 262 100.0 4e-69 MTYEEKIGKQKFAALVADFFANRYIDRGMRKWQGYYLSDHTAALKKQAQTEHLTYPPLSL QDQAYIRMILLRAYAEGQSVTIQLDLQTPDGQMLPPITGKVGGVTDSDVVHVGDQNISIR MIRHIDLIPFPV >gi|225002478|gb|ACIZ01000101.1| GENE 72 71702 - 72313 553 203 aa, chain + ## HITS:1 COG:no KEGG:LC705_01895 NR:ns ## KEGG: LC705_01895 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 203 1 203 203 180 99.0 2e-44 MKKWMMIATAFLALSGVSGAALYQQHVSAKSDVKTTTVKTVTKKTTNQPKATSKSQVSSN SASSTAQTTSTYESGATVTVKTPATTTEKTTASSATTETDAAATTSDAAATTTTQTASQP TVQAPFYVGTWHNEHVSLTITATQMTISQNGVSKTSRYTATSNGNGYVLTPTDIEADAIY LVPVTGGVEWVAPGATTPLILRP >gi|225002478|gb|ACIZ01000101.1| GENE 73 72418 - 73227 713 269 aa, chain - ## HITS:1 COG:L141530 KEGG:ns NR:ns ## COG: L141530 COG0657 # Protein_GI_number: 15673289 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Lactococcus lactis # 17 207 14 209 257 105 31.0 1e-22 MQVEKDVIYDEAHDLPVDIYVPDAANGGAVIYAHGGGWFRGDKENESDLGQYLADAGYLV AIPNFRLAPKYLYPTAQNDFDHFINWLLASPYEFDRERVGLLGASSGGTMVLQNSLTTGY PVVAWSPVVDFANWVQKNQMVKASVDAKNELGLTEIHEIHDAFYKYFIQTYLGGLDPRLL TAVNPTNHLTDQLGPTLLFNSADELMPLPSALHFVQQAAMFGRDISIHVVPGVGHARDYT SFALPETKRFFDHHLFASFEDKALNKATD >gi|225002478|gb|ACIZ01000101.1| GENE 74 73363 - 74232 266 289 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 74 274 82 279 285 107 40 3e-22 MRYTFDSKVTTATTIKRWLAKQGVSHRLFKKMLANHLLWLDGHRTGNTAIQAGQTVRFAI PTTMTVTPEKASLDVLYEDQNWLIINKPAHLTSVPGPHDPHHSLLNRIVWYLQQQKVTEP QPAIITRLDRDTVGLVLAAKHPYAQGRFDQAHHATLKKEYLAVVAGHLSHATETIEAPIG LGPDGIHRMVTENGQSAITKYQVLKEAVNTLVEVQLLTGRTHQIRVHFASLGHPLIGDSL YGQASPLIDHQALQATRLSFVDPFSEKRIQADLPIPDDFMNLLISSNRS >gi|225002478|gb|ACIZ01000101.1| GENE 75 74438 - 74587 250 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116495314|ref|YP_807048.1| ribosomal protein L33 [Lactobacillus casei ATCC 334] # 1 49 1 49 49 100 100 2e-20 MRNNIILGNNETGERIYLTSKNKRNTPDRLQLKKYSPKLRKRVVFTEVK >gi|225002478|gb|ACIZ01000101.1| GENE 76 74650 - 75225 610 191 aa, chain - ## HITS:1 COG:no KEGG:LC705_01891 NR:ns ## KEGG: LC705_01891 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 191 1 191 191 355 100.0 6e-97 MSNKRVLGNEFQTAYENAGGTDILKFLADVKQAYRCISDLTARMTAMPDSVKSESVPQLL VQQLDQTTFAESSVRKWEDDLRRFVAYLTPLEPPIAILDSWDTLNDFLEANQALLSSLQN VPLLHEDTQDVKTSTQLLVYPAEPLFQVVQADTGESDAIDLPGLTTADPDGVAEIARTHG VTPFAAFNVQP >gi|225002478|gb|ACIZ01000101.1| GENE 77 75517 - 76548 421 343 aa, chain - ## HITS:1 COG:no KEGG:LC705_01889 NR:ns ## KEGG: LC705_01889 # Name: not_defined # Def: cell surface protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 343 1 343 343 642 100.0 0 MKKIMSLILVLLFSMLFIWPLTVTTAAISPTFTVTPVLPNNQRQSVTGYFDLQVSPGQQE DLQLRIANQSDQTQTYRIAVNPAYTTNSGVIAFDQSQPPLDQNAIRLSTLIKGPRTVTVA ANSEQTVTYQLQAPAEHFIGIIAGGFYVLQEGATSSRASSNGVQFTNRFAIGITTILRQD LTTPNPPLLDITKASIGTNNHTPVVKARLHNPSSNQFGEIATDYILVKPGSQKPLLTGHF TGLAVAPHSFFTQSMPLNETKLAAGTYTLKWTAKSGSYTWSKQVNFRYNGQLPISVTASR PRSPSDADDHGLLPWIIAGITSALLIIVLGLWRWNVVHHRQNQ >gi|225002478|gb|ACIZ01000101.1| GENE 78 76675 - 76794 105 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPASTTVSRKFANLQEHIDLAARSPAITSQTYMVIFPTY >gi|225002478|gb|ACIZ01000101.1| GENE 79 77589 - 78122 912 177 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|199598487|ref|ZP_03211905.1| Acetyltransferase, including N-acetylase of ribosomal protein [Lactobacillus rhamnosus HN001] # 1 177 1 177 177 355 96 3e-97 MKGPRVTVRPFAASDIDDYFAYARLEQVTRAAGMAPLMTRQEAANHVKRFARERQDLALV YQLHVIGNIGVYPRELSPLTGDDMTREIGYILHPAYWHRGLMREGLQLVIANQFAHDIKA IWAGVFPSNHASIHLLKRLGFTFQFEVPLPRGLSGDHPRDEQYFRLLPNQFENEDLL >gi|225002478|gb|ACIZ01000101.1| GENE 80 78229 - 78780 537 183 aa, chain + ## HITS:1 COG:no KEGG:LGG_01900 NR:ns ## KEGG: LGG_01900 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 183 1 183 183 345 100.0 6e-94 MTVQTEYEQAYHKRLAAIEADPQLTVLSSMNQPQESDQNDVRQYIVFTDFKADEQKQKTN SIYVYTPFENVDKYGHSKADYQAQLLFETNRWDNVMHITVLETLGSESRLAFYDFENLGL AQLALKAFLNLAMKADVALVDGTISSFDKVNLAKLRHIFTKFGFNLKLTDPKTGIGKISR SLQ >gi|225002478|gb|ACIZ01000101.1| GENE 81 79103 - 80779 1246 558 aa, chain + ## HITS:1 COG:lin2114 KEGG:ns NR:ns ## COG: lin2114 COG0028 # Protein_GI_number: 16801180 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Listeria innocua # 6 558 15 564 564 696 62.0 0 MAEEKRYGADLIVESLANHGIDYVFGIPGAKIDRVFETLEHPKTKKSPQLIVARHEQNAA FMAAGIGRLTGKPGVVLTTSGPGASNLATGLVTATAEGDPVLALSGQVKRADLLRSSHQS MRNADLFAPITKYAAEVQDPDNVSEIIANAYQAAESGKQGASFVSIPQDVTDSPVNSEPI KPLVAPKLGPASPSDMTYLARAIKETSLPVLLLGMRASSSDVTAEIRELLSVTELPVVET FQGAGIISHRQIDNFFGRVGLFRNQPGDMLLQHSDLVIAIGYDPVEYEPRNWNADGKARI IVIDDVPAEIDHNFQPETELIGDISQTLDILVPLLRGYQVAPESKHYLSELQSKLQDSDV PPALTDQKLIHPLSIVAALQERVADDMTVAVDVGSHYIWMARHFRSYEPRHLLFSNGMQT LGVALPWAIAATLVRPGKKAVSISGDGGFLFSGQELETAVRLKADLVHIIWNDGHYDMVK FQEEMKYGRAAGVDFGPVDFVKYAEAFGAKGLRVDKPSELGTVLDEAFATQGPVIVDIPV DYSDNAELGAAMLPDQIY >gi|225002478|gb|ACIZ01000101.1| GENE 82 81131 - 81841 565 236 aa, chain + ## HITS:1 COG:SA2394 KEGG:ns NR:ns ## COG: SA2394 COG3527 # Protein_GI_number: 15928187 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alpha-acetolactate decarboxylase # Organism: Staphylococcus aureus N315 # 3 235 2 234 234 183 40.0 2e-46 MNTDRLYQHGTLAMLVPGLFAGTQTVGELLQHGDTGIGTLTGLDGELIIQAGKVYQVNAQ GKVREVQEDEKVPFANVHYQHDVAAGKLQGLDLAGFHKATLERLQTGNLFAAVRVEGTFT QMHTRAVLPQQPPYPTLTETASGQKEFHAENIKGTLIGYFSPDLYAGAVSPGFHVHFLAA DHSMGGHILGFELDSGELFLQKFSDFQLHLPTDDQPFLKQQFDTTSLVADILKAES >gi|225002478|gb|ACIZ01000101.1| GENE 83 81926 - 82069 83 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|199598491|ref|ZP_03211909.1| ## NR: gi|199598491|ref|ZP_03211909.1| hypothetical protein LRH_09198 [Lactobacillus rhamnosus HN001] # 1 47 1 47 47 91 100.0 1e-17 MSRSCNGLNTKRAVVKGKGAEIPVEFSQSILGQLDNIHWTVAIIAGR >gi|225002478|gb|ACIZ01000101.1| GENE 84 82138 - 82455 89 105 aa, chain - ## HITS:1 COG:no KEGG:LC705_01881 NR:ns ## KEGG: LC705_01881 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 105 1 105 105 210 100.0 1e-53 MPDFTVDIWGEIFVIGWLLTASGGLNVTMRWPKTGVYGRKTATRAEALFFGQSVNFILLS ITRSPAQGSECKDLERDGQGRAITPEAAYTPIPNRAGSRSHKKSQ >gi|225002478|gb|ACIZ01000101.1| GENE 85 82498 - 83961 1274 487 aa, chain + ## HITS:1 COG:lin0791 KEGG:ns NR:ns ## COG: lin0791 COG0833 # Protein_GI_number: 16799865 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 1 472 1 479 486 584 65.0 1e-166 MAQSASNQVKRELKTRHLSMIALGGSIGTGLFVASGSAIATAGPGGAIAAYIGIGLMVFF LMTSLGEMATYVPVSGSFSEYASRFVDPAFGFALGWNYWFNWAITVAVDVSTTAIVMHFW LPKVPGWLFSLGFLALIFLINIISVKSFGETEYWLSLIKVVTVFVFLIVGLLTIMGIMGG HGPIGFKNYTTGAAPFVGGIPATLAVFVVAGFSFQGTELIGITAGESETPETSIPKAIKQ VFWRILLFYILSIAVIAAIIPYTSPNLLGASVDQVAISPFTLVFDRIGLAGAASVMNAVI LTSVLSSANSGMYASTRMLWAMGGSGFAPRIFQKTNSRGIPLAALLLTTLVGALTFLTSI MGPHVYQLLVAASGLTGFLAWLGIAVSHFRFRRAFVKQGHDVHELKYHAKWFPVGPILAI IMSLIVIVGQDLQAVQHFAWGRLMVSYMSIPLFIVLFVWYKVKHKTKLIPLEKVDLAPHR EHEPNPK >gi|225002478|gb|ACIZ01000101.1| GENE 86 84090 - 85616 1124 508 aa, chain - ## HITS:1 COG:no KEGG:LC705_01879 NR:ns ## KEGG: LC705_01879 # Name: not_defined # Def: transcriptional regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 508 1 508 508 986 100.0 0 MLYEQTFLDRADLQKFQMFSAIKDSTVQTYTINTLSRHLDLSYQQGYNILQELFRDMAGL TVHPEKLKRRQINLLMEIDVTVDDYHLYLLKHAIAFQFVDYIVQANHPSTEKFCQAHFIS RSTLVRKTAALRKLLKRFQLKLSFSDLGFIGQESRIRLFLFDFYWLGYHGVDWPFKVLDE HQIVQEYMALPNAKTNPVDILEEILFWAICRVRISGNHFVTGNEAFDRIFNDYPPFQHDV YTREMFPGFNQRYMKGENDFFYFQQHRTITFLPSIPDDQNFIQYLLQRPTVTADFVKRLL AFLNQHVRHQTAFDLNNEHGLILNLARIALNNEMLGGDFMHLVDFYQPRGLNYTKTNLFR VLEKFVASLPKTPEYQYFLGTDHQFLHTLYFLLTPYLRYFVETPTVQVKLAYLDHDLLNR RMVNLLTDLPVVDLLPEDAAFEKADLVITSVDNEPAIKAAVPADFRGEIISWMTEDSDNA IFQLYLQIRHLYLKKTDASLSADNDERL >gi|225002478|gb|ACIZ01000101.1| GENE 87 85995 - 87572 1215 525 aa, chain + ## HITS:1 COG:no KEGG:LC705_01878 NR:ns ## KEGG: LC705_01878 # Name: not_defined # Def: transcriptional regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 525 1 525 525 1012 100.0 0 MKDNHDIFLSMSDAEKLSLFRTIIDVREAQTPVKKRVKAYRDHRLLVSEVNLKQVAAITN RNYGSVYNTYNGLMHSLEAMIGREHASVKTLLGIPVDEFRYYLVKQSNPYHFLDAVLYQR YEDFDDFLRACDSSKATVLRHLKVIRGYARQSGVQFSYETLSFVGAELNVRLFITIAYWL ATNGVAWPFENLSHDRAGEILDDLLVVFDSGKVNKITRELLMYYIAVAHQRILSGHVLSH EAGSKVLQYPVPNLFSDAALSLLDKSKRLQHLTTQQQQSESDALYFLFNFAPLYIITDGQ VEQRIIARYNDYNPEIYQLINGFFTRFPYNFKLDIHLPDDTYNLLFANMLSVTVSVLAFN KDFTTSLLAEFSANMQQTKDDPDFYQQVKVTLNEVIDSQQLTSFVGCRDVLAEAFYRNLH QLLVQFQPQQKVLVAPVIEQTVTGYIDLLAFLHAVPFVELASPDADLKDVDLIITTSVGA IKDAAGQTQIFPWHINVTNDHYGHLYSLLRELWDGKTLKDARFIY >gi|225002478|gb|ACIZ01000101.1| GENE 88 88015 - 89298 1048 427 aa, chain + ## HITS:1 COG:L150515 KEGG:ns NR:ns ## COG: L150515 COG0172 # Protein_GI_number: 15673694 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Lactococcus lactis # 1 424 1 423 423 528 59.0 1e-150 MLDLKLIRQKPEWAKKKLAARAIKGEEIDELIALDEKRRKVTVQTEELKAKRNEVSGQIA VMKRNKENADEQIAAMREVGQKISQLDKELAELNEKVTYILVRLPNFPADDVPMSLNEDD SREEYKWGNIPHFDFQPKHHWDIGEKLGILDFERAAKVSGSRFVYYKGAGARLERAVYNF FLDEHQKEGYEEIIPPYLVNNDSMFGTGQFPKFTDATYTITNDGEPLTMIPTAEVPLVNY YRGDIMDAAKLPVNFTALTPAFRSEAGSAGRDTRGLIRMHQFNKVEMVKFCKPEDSWKEL KNLIHDAEDLLRKLGLPYHVITLASNDASFTSAKTNDLEVWFPAQDRYREISSCSNCTDF QARRAQIRYRDDDGKLQFVHTLNGSGLAVGRTVAAILENYQQADGTVKIPDVLVPYMHGQ TAIKQED Prediction of potential genes in microbial genomes Time: Wed May 25 20:19:20 2011 Seq name: gi|225002477|gb|ACIZ01000102.1| Lactobacillus rhamnosus LMS2-1 contig00113, whole genome shotgun sequence Length of sequence - 239 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:19:20 2011 Seq name: gi|225002476|gb|ACIZ01000103.1| Lactobacillus rhamnosus LMS2-1 contig00120, whole genome shotgun sequence Length of sequence - 240 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 52 - 240 205 ## LC705_01601 prolyl-tRNA synthetase Predicted protein(s) >gi|225002476|gb|ACIZ01000103.1| GENE 1 52 - 240 205 62 aa, chain - ## HITS:1 COG:no KEGG:LC705_01601 NR:ns ## KEGG: LC705_01601 # Name: proS # Def: prolyl-tRNA synthetase # Organism: L.rhamnosus_Lc705 # Pathway: Aminoacyl-tRNA biosynthesis [PATH:lrl00970] # 1 51 222 272 576 94 100.0 9e-19 VYSDSSDYAANLEMATSMALPKQGVEAQAELTPVDTKDAKTIAEVAALLKIQTLSVPTKR GA Prediction of potential genes in microbial genomes Time: Wed May 25 20:19:22 2011 Seq name: gi|225002475|gb|ACIZ01000104.1| Lactobacillus rhamnosus LMS2-1 contig00124, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:19:23 2011 Seq name: gi|225002474|gb|ACIZ01000105.1| Lactobacillus rhamnosus LMS2-1 contig00129, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 229 83 ## COG0438 Glycosyltransferase Predicted protein(s) >gi|225002474|gb|ACIZ01000105.1| GENE 1 1 - 229 83 76 aa, chain - ## HITS:1 COG:wcaI KEGG:ns NR:ns ## COG: wcaI COG0438 # Protein_GI_number: 16129990 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli K12 # 1 76 278 353 407 159 100.0 1e-39 MAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGNAVI TAEAYTELGQLCETFP Prediction of potential genes in microbial genomes Time: Wed May 25 20:19:23 2011 Seq name: gi|225002473|gb|ACIZ01000106.1| Lactobacillus rhamnosus LMS2-1 contig00132, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:19:24 2011 Seq name: gi|225002472|gb|ACIZ01000107.1| Lactobacillus rhamnosus LMS2-1 contig00135, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 241 164 ## COG1175 ABC-type sugar transport systems, permease components Predicted protein(s) >gi|225002472|gb|ACIZ01000107.1| GENE 1 1 - 241 164 80 aa, chain + ## HITS:1 COG:malF KEGG:ns NR:ns ## COG: malF COG1175 # Protein_GI_number: 16131859 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Escherichia coli K12 # 1 80 113 192 514 168 100.0 3e-42 SWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKFGGEQKLQLKETTAQPEGERAN LRVITQNRQALSDITAILPD Prediction of potential genes in microbial genomes Time: Wed May 25 20:19:24 2011 Seq name: gi|225002471|gb|ACIZ01000108.1| Lactobacillus rhamnosus LMS2-1 contig00138, whole genome shotgun sequence Length of sequence - 242 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:19:26 2011 Seq name: gi|225002470|gb|ACIZ01000109.1| Lactobacillus rhamnosus LMS2-1 contig00142, whole genome shotgun sequence Length of sequence - 6327 bp Number of predicted genes - 7, with homology - 5 Number of transcription units - 7, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 257 - 316 6.0 1 1 Tu 1 . + CDS 471 - 794 85 ## + Term 1003 - 1049 10.1 - Term 691 - 729 -0.7 2 2 Tu 1 . - CDS 798 - 968 131 ## + Prom 1020 - 1079 4.6 3 3 Tu 1 . + CDS 1106 - 1645 294 ## gi|229553328|ref|ZP_04442053.1| probable replication protein + Term 1795 - 1844 2.2 - Term 1995 - 2032 6.1 4 4 Tu 1 . - CDS 2096 - 2875 345 ## BpOF4_21764 initiator RepB protein - Prom 2901 - 2960 3.8 - Term 3417 - 3462 11.2 5 5 Tu 1 . - CDS 3540 - 3719 224 ## LSEI_0543 hypothetical protein 6 6 Tu 1 . + CDS 4898 - 5638 203 ## LAR_1482 hypothetical protein + Prom 5756 - 5815 4.2 7 7 Tu 1 . + CDS 6045 - 6239 117 ## gi|229553335|ref|ZP_04442060.1| conserved hypothetical protein Predicted protein(s) >gi|225002470|gb|ACIZ01000109.1| GENE 1 471 - 794 85 107 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLHQNLKLNYHRLLHQNLKLNHHRSPHQSLKLDHHRLLHQNLRLSHHQLLYQRLKPNHHQ QRHQKQRRTLKQPQHQKQRRTLKQPQHQKQRRMLKQLQRQKQRRTLK >gi|225002470|gb|ACIZ01000109.1| GENE 2 798 - 968 131 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFLDDPLGYTLTHLLEISTKLTLHLISLALMRIFRHVYAIFRLHLDDSLMYLSADL >gi|225002470|gb|ACIZ01000109.1| GENE 3 1106 - 1645 294 179 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229553328|ref|ZP_04442053.1| ## NR: gi|229553328|ref|ZP_04442053.1| probable replication protein [Lactobacillus rhamnosus LMS2-1] # 1 179 1 179 179 232 100.0 7e-60 MNKTVKELADELGVSKQTIQYHYQRLPANKRQKDSQGRNLISSDLERIIRNKVAKTLPPN NHQKDRETSTNSDKNNIDIIATMKDEITYLRADRDKQFAAKDQQIEKLQKLLDQSQQLQL MTAQKLKQLEKPKNERESDSKEKDEQIHARASGVPKAVENSADKPVTFWQRLFGERNNK >gi|225002470|gb|ACIZ01000109.1| GENE 4 2096 - 2875 345 259 aa, chain - ## HITS:1 COG:no KEGG:BpOF4_21764 NR:ns ## KEGG: BpOF4_21764 # Name: not_defined # Def: initiator RepB protein # Organism: B.pseudofirmus # Pathway: not_defined # 26 247 17 229 398 72 28.0 1e-11 MVSAGRILWTSDRDFNKDEIRDQRYFLVAEHNDLITKARHDLNARELKIMDYVVSKIKPN DEHFNLIDTSMYELTRVLDLKRSGRTYSQLAQNLEDMRAKSVKIYNPSERRLTLTGWFEV VDIWENGQVKLRINKQFAPFLLKLKDSGHYTQYFLEDTVRLKSKYAILLYKLMREVDKDH GQSIGILQGTPEEYMAWLGSPSKYQYKYLKNKVLNPAIEEINCKINDMELELLQARRGRK VVQIEIHNNFARRKSLRYQ >gi|225002470|gb|ACIZ01000109.1| GENE 5 3540 - 3719 224 59 aa, chain - ## HITS:1 COG:no KEGG:LSEI_0543 NR:ns ## KEGG: LSEI_0543 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 59 1 59 59 70 72.0 2e-11 MTKQDETHRVMFTLTDQAIAKLDQLVAKKQQEVNQNPDLAKYHVRVTKSNIVEDWLSKQ >gi|225002470|gb|ACIZ01000109.1| GENE 6 4898 - 5638 203 246 aa, chain + ## HITS:1 COG:no KEGG:LAR_1482 NR:ns ## KEGG: LAR_1482 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 42 242 131 343 347 80 29.0 5e-14 MKKELGIGLGILLIANLAGCQENSTAKNVDSQKQFQSKALAKNKSESKLKTEVQSKSVFE SKEKANAESKSKNDADVKVKTEEKPKTNSDQVATNSYSTQLVPDDLQGTWYSSDDNSSSP IVFTPNEMKIGSSITEIHGSNEMTEQDKRVINNNDISAMNDDRETWLLANMVTDTDGNTW LNLRGWYQNVGAGSFYKVTIKQVEGQAIKVMTSAHGGGMWSDGHYYTSQALADVNKNRTY PDDHLN >gi|225002470|gb|ACIZ01000109.1| GENE 7 6045 - 6239 117 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229553335|ref|ZP_04442060.1| ## NR: gi|229553335|ref|ZP_04442060.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 64 117 180 180 127 98.0 3e-28 MSQHFCGRGNGDVYADYVYQNEFRIFIIPLVKSGYSTLNALEKDTIAAYHAYDKGYNRTR GNQN Prediction of potential genes in microbial genomes Time: Wed May 25 20:19:57 2011 Seq name: gi|225002469|gb|ACIZ01000110.1| Lactobacillus rhamnosus LMS2-1 contig00143, whole genome shotgun sequence Length of sequence - 1543 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 250 - 444 232 ## LSEI_0358 hypothetical protein - Prom 603 - 662 7.6 - Term 751 - 780 1.4 2 2 Op 1 . - CDS 838 - 1197 298 ## gi|229553337|ref|ZP_04442062.1| hypothetical protein HMPREF0539_2594 3 2 Op 2 . - CDS 1210 - 1422 305 ## COG0582 Integrase Predicted protein(s) >gi|225002469|gb|ACIZ01000110.1| GENE 1 250 - 444 232 64 aa, chain - ## HITS:1 COG:no KEGG:LSEI_0358 NR:ns ## KEGG: LSEI_0358 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 64 1 64 64 104 93.0 1e-21 MDEKKVLKPIDEMLADPWQVDIQELCEASVNEPDEIKKNLYDSLYTYILQKRQEDIINRP GFVI >gi|225002469|gb|ACIZ01000110.1| GENE 2 838 - 1197 298 119 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229553337|ref|ZP_04442062.1| ## NR: gi|229553337|ref|ZP_04442062.1| hypothetical protein HMPREF0539_2594 [Lactobacillus rhamnosus LMS2-1] # 1 119 1 119 119 224 100.0 1e-57 MDLDFETNKYDLFDDWHQNKTKQAFTQKLQQQAQIEKTHLPKLLSREDLKIRWQMNSRQS VHQVASKPDFPQPVFAFNHGKTPLYLATEIQIFEINHPWVITPGARLAYSHWILRNVID >gi|225002469|gb|ACIZ01000110.1| GENE 3 1210 - 1422 305 70 aa, chain - ## HITS:1 COG:pli0062 KEGG:ns NR:ns ## COG: pli0062 COG0582 # Protein_GI_number: 18450344 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 1 70 78 147 147 124 91.0 5e-29 MSKVGDLLGINYLGTHTMRKTGAYRVYTQSNYNIGLVMNLLNHSSEAMTLAYLGLDQAST ETMLDQIDFG Prediction of potential genes in microbial genomes Time: Wed May 25 20:20:29 2011 Seq name: gi|225002468|gb|ACIZ01000111.1| Lactobacillus rhamnosus LMS2-1 contig00144, whole genome shotgun sequence Length of sequence - 78157 bp Number of predicted genes - 73, with homology - 72 Number of transcription units - 28, operones - 19 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 101 - 217 100.0 # EU184020 [D:4881..4998] # 5S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + Prom 213 - 272 4.7 1 1 Op 1 . + CDS 365 - 685 173 ## COG0526 Thiol-disulfide isomerase and thioredoxins 2 1 Op 2 12/0.000 + CDS 682 - 1458 660 ## COG2966 Uncharacterized conserved protein 3 1 Op 3 . + CDS 1476 - 1934 253 ## COG3610 Uncharacterized conserved protein + Term 2024 - 2079 -0.1 4 2 Op 1 20/0.000 + CDS 2623 - 3816 1163 ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component 5 2 Op 2 24/0.000 + CDS 3853 - 4731 1030 ## COG0559 Branched-chain amino acid ABC-type transport system, permease components 6 2 Op 3 19/0.000 + CDS 4736 - 5686 868 ## COG4177 ABC-type branched-chain amino acid transport system, permease component 7 2 Op 4 18/0.000 + CDS 5683 - 6468 182 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 8 2 Op 5 . + CDS 6461 - 7177 265 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 7201 - 7241 7.2 + Prom 7219 - 7278 5.8 9 3 Tu 1 . + CDS 7342 - 7665 389 ## COG1694 Predicted pyrophosphatase + Term 7667 - 7714 -0.1 - Term 7718 - 7757 3.6 10 4 Op 1 . - CDS 7785 - 8687 691 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold 11 4 Op 2 . - CDS 8680 - 9996 783 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 10031 - 10090 5.8 + Prom 10152 - 10211 4.9 12 5 Op 1 2/0.000 + CDS 10314 - 10979 797 ## COG0274 Deoxyribose-phosphate aldolase 13 5 Op 2 9/0.000 + CDS 10981 - 12171 1117 ## COG1015 Phosphopentomutase 14 5 Op 3 . + CDS 12296 - 13012 758 ## COG0813 Purine-nucleoside phosphorylase + Prom 13099 - 13158 3.3 15 6 Tu 1 . + CDS 13203 - 14684 1418 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 14711 - 14750 6.1 - Term 14613 - 14652 1.1 16 7 Tu 1 . - CDS 14832 - 16193 1095 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 16232 - 16291 8.8 + Prom 16481 - 16540 5.5 17 8 Op 1 1/0.000 + CDS 16742 - 18535 1524 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 18 8 Op 2 2/0.000 + CDS 18589 - 19458 664 ## COG3711 Transcriptional antiterminator + Prom 19475 - 19534 2.2 19 8 Op 3 2/0.000 + CDS 19559 - 19924 446 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 20 8 Op 4 . + CDS 19950 - 21374 1143 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 21384 - 21439 10.5 - Term 21370 - 21425 7.5 21 9 Op 1 . - CDS 21433 - 22281 601 ## LC705_00316 hypothetical protein 22 9 Op 2 . - CDS 22278 - 22958 572 ## LC705_00317 hypothetical protein 23 9 Op 3 . - CDS 22936 - 25320 1819 ## COG1199 Rad3-related DNA helicases - Prom 25565 - 25624 4.0 + Prom 25390 - 25449 5.2 24 10 Op 1 . + CDS 25527 - 26816 1273 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 26828 - 26867 6.0 + Prom 26925 - 26984 3.0 25 10 Op 2 . + CDS 27013 - 27663 623 ## LC705_00320 hypothetical protein + Term 27744 - 27787 7.4 + Prom 27880 - 27939 3.3 26 11 Op 1 5/0.000 + CDS 27961 - 29895 1368 ## COG3711 Transcriptional antiterminator 27 11 Op 2 7/0.000 + CDS 29888 - 30343 441 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 28 11 Op 3 4/0.000 + CDS 30363 - 31805 1671 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 31813 - 31859 8.6 + Prom 31933 - 31992 5.2 29 12 Op 1 1/0.000 + CDS 32061 - 33032 960 ## COG1482 Phosphomannose isomerase + Term 33072 - 33115 7.1 + Prom 33176 - 33235 4.6 30 12 Op 2 7/0.000 + CDS 33426 - 34142 609 ## COG2188 Transcriptional regulators 31 12 Op 3 9/0.000 + CDS 34156 - 35337 1043 ## COG2222 Predicted phosphosugar isomerases 32 12 Op 4 . + CDS 35414 - 36574 973 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Prom 36603 - 36662 2.5 33 13 Op 1 1/0.000 + CDS 36717 - 38498 1423 ## COG1874 Beta-galactosidase 34 13 Op 2 13/0.000 + CDS 38691 - 39173 548 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 35 13 Op 3 13/0.000 + CDS 39186 - 40100 933 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 36 13 Op 4 4/0.000 + CDS 40087 - 40908 853 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID + Term 40965 - 41001 0.3 37 13 Op 5 . + CDS 41050 - 41430 551 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA + Term 41451 - 41486 3.3 + Prom 41517 - 41576 4.3 38 14 Op 1 25/0.000 + CDS 41732 - 43225 1204 ## COG0438 Glycosyltransferase 39 14 Op 2 . + CDS 43242 - 44855 1174 ## COG0438 Glycosyltransferase + Prom 44890 - 44949 4.0 40 15 Tu 1 . + CDS 44979 - 46250 791 ## LC705_00335 hypothetical protein + Term 46309 - 46365 9.3 41 16 Op 1 . - CDS 46390 - 47586 827 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 42 16 Op 2 . - CDS 47573 - 48652 753 ## COG0006 Xaa-Pro aminopeptidase - Term 48678 - 48719 6.4 43 17 Op 1 10/0.000 - CDS 48760 - 50085 946 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 44 17 Op 2 8/0.000 - CDS 50120 - 50458 486 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 45 17 Op 3 . - CDS 50525 - 50842 431 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 46 17 Op 4 3/0.000 - CDS 50926 - 51966 702 ## COG1363 Cellulase M and related proteins 47 17 Op 5 . - CDS 51951 - 53744 780 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Term 54049 - 54083 4.3 48 18 Tu 1 . - CDS 54149 - 55396 1274 ## COG2195 Di- and tripeptidases - Prom 55460 - 55519 3.6 49 19 Tu 1 . + CDS 55696 - 57144 1273 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Term 57152 - 57210 8.6 50 20 Op 1 . - CDS 57232 - 57876 547 ## COG3153 Predicted acetyltransferase - Prom 57958 - 58017 8.4 51 20 Op 2 . - CDS 58042 - 58254 162 ## LC705_00346 hypothetical protein - Prom 58481 - 58540 8.0 - Term 58597 - 58650 4.5 52 21 Op 1 . - CDS 58885 - 59037 116 ## LGG_00362 cobalt ABC transporter ATPase and permeases 53 21 Op 2 . - CDS 59088 - 60689 1260 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 60721 - 60780 4.9 54 22 Op 1 . + CDS 61263 - 61952 270 ## LC705_00350 hypothetical protein 55 22 Op 2 . + CDS 62004 - 62711 101 ## LC705_00351 peptidase S54, rhomboid + Term 62923 - 62963 3.5 56 23 Op 1 4/0.000 + CDS 63090 - 63656 580 ## COG4721 Predicted membrane protein 57 23 Op 2 . + CDS 63663 - 65006 1087 ## COG1122 ABC-type cobalt transport system, ATPase component 58 23 Op 3 . + CDS 65011 - 65658 486 ## LC705_00354 cobalt ABC transporter permease 59 24 Op 1 1/0.000 + CDS 65772 - 66464 539 ## COG0819 Putative transcription activator 60 24 Op 2 1/0.000 + CDS 66445 - 66945 396 ## COG4732 Predicted membrane protein 61 24 Op 3 . + CDS 66996 - 67484 522 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family 62 24 Op 4 6/0.000 + CDS 67490 - 67834 167 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family 63 24 Op 5 11/0.000 + CDS 67831 - 68460 595 ## COG0352 Thiamine monophosphate synthase 64 24 Op 6 . + CDS 68462 - 69313 743 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase + Term 69337 - 69379 8.1 + Prom 69438 - 69497 4.2 65 25 Tu 1 . + CDS 69703 - 71151 1271 ## COG0531 Amino acid transporters + Term 71155 - 71213 14.5 66 26 Tu 1 . - CDS 71452 - 71619 72 ## + Prom 71452 - 71511 4.3 67 27 Op 1 . + CDS 71564 - 72583 817 ## COG1609 Transcriptional regulators 68 27 Op 2 9/0.000 + CDS 72617 - 73009 463 ## COG1869 ABC-type ribose transport system, auxiliary component 69 27 Op 3 21/0.000 + CDS 73174 - 74676 194 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 70 27 Op 4 16/0.000 + CDS 74660 - 75640 966 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 71 27 Op 5 8/0.000 + CDS 75751 - 76710 1060 ## COG1879 ABC-type sugar transport system, periplasmic component + Term 76762 - 76792 2.1 72 27 Op 6 . + CDS 76808 - 77749 791 ## COG0524 Sugar kinases, ribokinase family + Term 77787 - 77836 9.4 - Term 77775 - 77823 5.4 73 28 Tu 1 . - CDS 77854 - 78114 126 ## LC705_00369 transcriptional regulator Predicted protein(s) >gi|225002468|gb|ACIZ01000111.1| GENE 1 365 - 685 173 106 aa, chain + ## HITS:1 COG:BH3098 KEGG:ns NR:ns ## COG: BH3098 COG0526 # Protein_GI_number: 15615660 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 4 102 5 104 104 87 38.0 6e-18 MPTNATKTTLKSLTARGTVVVDFWAPWCGPCKILEPILTALEAELSGLTIVRYNVEKDPS LPQTMGIMSVPTLVVYQDGHAKEKVTGVYAKEKLKRYFEKKLEAGR >gi|225002468|gb|ACIZ01000111.1| GENE 2 682 - 1458 660 258 aa, chain + ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 16 258 9 249 250 236 50.0 2e-62 MTNVMKQSKVNDQNQVLATCLLAGRIMIEGGSEMYRVEDTMRRIAVNAGQPDTLVFTTPT GIFASIENQPYIQERPINKRSIDMEKVARVNQLSRSFAAKEIDLGDLHAALTQLDQNTPF FPISWQILSAAVVSVTLMILFAQKYDWFDIPLAAVVGAIGFWVDIKVNTITNIRFISELL GALAVGLTAWIGVRLGWGHSLDNIIIGAIMPLVPGVAITNSIRDMLAGHLLSGMVRGMES ILSACAIGVGIAIIFRFF >gi|225002468|gb|ACIZ01000111.1| GENE 3 1476 - 1934 253 152 aa, chain + ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 139 1 139 152 136 50.0 2e-32 MSWIFALLIQLSFSYLATVAFAIIINVPRKALNLAGWSGMMGWLAYWLLMEAGIGRMMAN LTGAFVIGLCGIFFARYKKMPVIIFNIPGFVPLVPGAIAYQAVRAVVMGQLNAALRYVSR VIMIAGAIAVGFMLAQLLSELLYRRAVLKPKK >gi|225002468|gb|ACIZ01000111.1| GENE 4 2623 - 3816 1163 397 aa, chain + ## HITS:1 COG:SP0749 KEGG:ns NR:ns ## COG: SP0749 COG0683 # Protein_GI_number: 15900644 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 35 397 30 385 386 232 42.0 8e-61 MAKKFLKTIISTGMIAASVLALSGCATKSAANKGNTAGSTIKIGVNMELSGAVAGYGEQE KQGVELAVKQINAAGGIKVGNSKKKITAIYRDNKSSTSGAASVAAQLANSDKAVAIVGPA TTNDGTASIPNVTKAGVPMVGPSATDPNFTLQKNGSVQKYVFRACFTDAFQGEKAAVFAN DTLKAKNIAIIADNSTDYGTGLAKAFKKKFAGKVVATEYYQSGDKDFNAMLTNIKNKKID AIYAPGYYSELGLVIKQARQAGIKVPIIGADGMADPKLAKIAGAENATDIYYTTPFSTLS ANRSSLVKNFLANYKKQYNANAPTFSALAYDSVYMIKQAIEDQKSADSASIAKGLAKIKN MPGVTGTTTIDSKHNPEKPIAVEELTQGKITKAYTVK >gi|225002468|gb|ACIZ01000111.1| GENE 5 3853 - 4731 1030 292 aa, chain + ## HITS:1 COG:SP0750 KEGG:ns NR:ns ## COG: SP0750 COG0559 # Protein_GI_number: 15900645 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid ABC-type transport system, permease components # Organism: Streptococcus pneumoniae TIGR4 # 4 292 1 289 289 302 67.0 5e-82 MQTMMQQIINGLSLGSIYALLALGYTMVYGIIKLINFAHGDIYMLGAFWGYYAINYLHFG FVTALLSAMLMASLSGVLIEYLAYRPLRNSPRIAALITAIGVSFFLENGMSFLFGANARN FPQVIATKTYHLGGVDISNVQLLILFTSLVLMILLQFIIKKTTMGKAMRAVAVDPQAAQL VGINPDHVISFTFALGSALAGAAGVMIGLYYNSIDPLMGMVPGIKAFVAAVVGGIGSIPG AAIGGFLIGLLETGVQAIGLSAYKDAAVYLVLILVLVVLPAGLFGKRQREKV >gi|225002468|gb|ACIZ01000111.1| GENE 6 4736 - 5686 868 316 aa, chain + ## HITS:1 COG:SP0751 KEGG:ns NR:ns ## COG: SP0751 COG4177 # Protein_GI_number: 15900646 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 313 1 315 318 259 53.0 3e-69 MLKNLRSKLIWLAIMVAGFVLIDIGEFTGIVNSFIENALVTIGINIILAVGLNLIIGFSG QFSLGHAGFMAIGAYATAIVTQNMATPLGFYLAMLLGMVIAVIAALIVGIPTLRLRGDYL AIATMGAAEIIRVIINNLKITNGPAGMFNIPPLASWPTVYVLMCVTTVVIVNFVHSRSGR AIMAIRDDDIAAESIGINPTKWKLAAFVLGAATAAIGGSLHASYLQTIAPGDFGIMNSIS LLIIVVLGGVGSMTGTFVAAIVLGVIDTVLQNFGTLRMVIYALALILLMVFKPSGLLGHY ELSFSRKRRARKEAAS >gi|225002468|gb|ACIZ01000111.1| GENE 7 5683 - 6468 182 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 235 1 214 311 74 25 1e-12 MTKQLVVEHVSKVFGGLKAVADVSLTIDQGSLIALIGPNGAGKTTLFNMLTGESGPTTGK ITLNTATGAVDITKKKAFQVAKLGVARTFQNIRLFGAMSVKENVLVARTHLYHESFLGTV LRLPQFYQKERAVGMAADELLTFFELNDVADEPTASLPYGTQRRVEIVRAVATKPQLLFL DEPAAGMNPEETADLSRLIARVREHFGITVVLIEHDMSLVMNLAEYIYVLDHGAMIAEGT PQAIQRDPRVISAYLGGEVHA >gi|225002468|gb|ACIZ01000111.1| GENE 8 6461 - 7177 265 238 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 225 1 230 245 106 27 3e-22 MLDVKDLVVNYGGIQAVKGVSFRVQTGEIVALIGANGAGKSTILKTISGLLRPRSGTILY EDKNIVGMAAAKIVKMGISQVPEGRHIFAGLTVSENLQMGAFGLKDKQVASDQLAVVYDR FPVLKERRNQDAATLSGGEQQMLAMGRALMARPKLLLLDEPSMGLSPIFIQEIFDIITKI KSQGTTILLIEQNAKQALAVADRGYVLASGTVKLTGTGADLLADPAVQATYLGAQPAT >gi|225002468|gb|ACIZ01000111.1| GENE 9 7342 - 7665 389 107 aa, chain + ## HITS:1 COG:BS_yvdC KEGG:ns NR:ns ## COG: BS_yvdC COG1694 # Protein_GI_number: 16080518 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus subtilis # 1 105 1 105 106 91 42.0 3e-19 MNLIAHQQWLVDFYEKRHWYQYSPFIRLNFLTEETGELSRAIRAIEIGRDHPGEPVQNEA DLEANLKEELADVLDQVLILSAKFKIDPNDLLAQSEHKLKARFKQDV >gi|225002468|gb|ACIZ01000111.1| GENE 10 7785 - 8687 691 300 aa, chain - ## HITS:1 COG:lin0949 KEGG:ns NR:ns ## COG: lin0949 COG4814 # Protein_GI_number: 16800018 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 46 272 57 296 300 105 28.0 1e-22 MIKHWRKWLLLVLSVLAMGAVVFPATQWMAQNVKSARVVHNSRMQPIILIPGSSATEDRF NTLITQLNAQTTGHSLLKITVKTNGTMTYSGKIAARDTEPYIVVAFENNKDGYNNIKKQA EWFNIAFKQLAKTYNFNRFRGIGHSNGGLIFTLFLEKYYNDSDVQMTRLMTIGTPYNLEE SNPDNRTQMLNDFITSRNKLPSSLTVYSIAGTETLDGDGTVPIESVEAGKYIFQNQVAHY TQITVSGDDANHSALPQNRQIVSLISQYMVATPNQQGVRPGTGGSGRGVGPAPGDGGQNQ >gi|225002468|gb|ACIZ01000111.1| GENE 11 8680 - 9996 783 438 aa, chain - ## HITS:1 COG:lin2906 KEGG:ns NR:ns ## COG: lin2906 COG1455 # Protein_GI_number: 16801965 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 431 4 438 450 219 34.0 1e-56 MSNLTKRLLPMLVANSVRLRQTRTYRALQQTFAVIFPFVVIGAWAQMLELSVFSRNGFFA VIYNLNKVIPFYTQMRTLLIAIENVTINLMAVMTAFFVAKYVARSYKKDDSLAAITSVGA FLILNLETRRNAQSVFQMNNLGYRGLFIAIIFGLLIGWLFRFTRADLEEPSHRYTIAGLV SRGLRGTWMMLLILISCVVINYGLGFVSTEGFVGLFYVVFQFPAAHLTHVSLRLALVTTI NALMWWAGIEGPINPLMVQSGSTTATANLNYALEHADLFNVPNPITMGTIYRPFASFGGV GMTLALIIATLWVGRSKASRRIAGLSLFPGLVNVSSPVLIGWPVMLNPIMLVPFLITPLI NMAIAWTAIRLHLMPPSVYTVPATTPGPLIAFLGTNGNLVALLVAVLCLVISVFIYVPFV RLAETINLESAKVGGHHD >gi|225002468|gb|ACIZ01000111.1| GENE 12 10314 - 10979 797 221 aa, chain + ## HITS:1 COG:L63310 KEGG:ns NR:ns ## COG: L63310 COG0274 # Protein_GI_number: 15673422 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Lactococcus lactis # 7 216 5 212 220 241 62.0 8e-64 MDKPLAKYIDHTLLKPDATQAQIDVILDQAKQYDFASVCINPYWVVRAAASLRDTDVNVC TVIGFPLGANTTQTKVFEAGQAVDEGAKEVDMVLNIGELKAGHDDHVRADIQAVADITHA KGGILKVIIEAVLLTDDEKVTACKLAAAAGADFVKTSTGFAAGGATVHDVKLMRQTVGDQ LGVKAAGGIHTYAEAKALIEAGADRLGASAGVQILKEAGEA >gi|225002468|gb|ACIZ01000111.1| GENE 13 10981 - 12171 1117 396 aa, chain + ## HITS:1 COG:SPy0890 KEGG:ns NR:ns ## COG: SPy0890 COG1015 # Protein_GI_number: 15674915 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Streptococcus pyogenes M1 GAS # 3 396 4 403 403 427 54.0 1e-119 MAFDRIITIVLDSIGIGEAPDAAKYHDTGADTLGHIGDYFAGKLSLPNLQAIGLGNIDRP TPIAGVKPLGSPSGYFGKMSEISAGKDSMDGHWEMMGLPVTEPLGYFPNGFPEDLIKQIE EFSGRHVILNKPYSGTEAIKDYGEEQLKTGDLIVYTSGDSVLQIAAQTDVIPLEELYRIC RYVRSITIDAPYRIGRVIARPYVGTDPTTFTRTSDRHDYTLKPDKPTDLDRLQGAGVPTY GIGKINDIFSGQGLDDGVHTVSNVDGMNQTIAAVKSDRKGFIFTNLVDFDAMYGHRRNAQ GDGDALMTFDHQLGDLLTVLRREDLLMITADHGNDPTFRGTDHTREFVPLLAYSKALAGN GDLGIRSPFSDLGATILDNFEVTGNQVGQSFLSLLR >gi|225002468|gb|ACIZ01000111.1| GENE 14 12296 - 13012 758 238 aa, chain + ## HITS:1 COG:lin1970 KEGG:ns NR:ns ## COG: lin1970 COG0813 # Protein_GI_number: 16801036 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Listeria innocua # 1 234 1 233 233 279 61.0 3e-75 MSTHIDAPKGAIADVVLLPGDPLRAQYIAEHFLEKAVRYNTVRNAFGYTGTFEGRRISVQ ATGMGIPSISIYVNELIQDYGVKTLIRVGTAGGMGSDVKVRDVILVQGSSTDSSIVLNTF GAGMYFAPIADFQLLREAANLADAGALRYHVGNVLGEDRFYNDEMDRQKLIDYGVLATEM ETPALYLLAAKFHAQALSILTVSNHLITGEETTAQERQTSFNDMIGLALGVAKKIPVR >gi|225002468|gb|ACIZ01000111.1| GENE 15 13203 - 14684 1418 493 aa, chain + ## HITS:1 COG:CAC2663 KEGG:ns NR:ns ## COG: CAC2663 COG0791 # Protein_GI_number: 15895921 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 346 478 124 243 255 98 43.0 3e-20 MVDSKKVLSVTAGFVGAAGLAALATGANTVSASTGTVSYKSGATTVWNSPSWHQVKRYVT FGDTVQLLGKTVDQNGATWYKVGDNQWIPELYLNVAGKTATVETPSSAASQTAVSQAPAS QAPTSQAPATQTPAAPQTDTQTANTQLYVKNIGSAVTVWTTPAYTHATGQYLEGSQTLTA VAQQQANGETWYRLANGGYVPARFVSTTPVAVTPQPAAPQSNEASVASTNTNAANDSAAA SSAAASQAAASSAAASTAAANAAVASANAIASQAAASEAAASQAAASQAAASQAAASQAA ASQAAASQAAASQAAASQAAASQAAANAAQQAPANQANVTTTQVNANQAQQQTATATPAV NTSNQTAAVSASRQAKIQAVIAIAEQQVGKPYVWGGKGPNSFDCSGLMYYAFLNGAGVNI GGWTVPQESSGTQVSLSALQPGDLLFWGSHGSTYHVALYIGGGTMIQAPQPGENVKYTAL AYFMPDFAVRPSL >gi|225002468|gb|ACIZ01000111.1| GENE 16 14832 - 16193 1095 453 aa, chain - ## HITS:1 COG:TP0921 KEGG:ns NR:ns ## COG: TP0921 COG0446 # Protein_GI_number: 15639906 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Treponema pallidum # 1 440 1 443 445 313 40.0 7e-85 MKILVIGATHAGTFATQQILTDHPDAEVTVYERNNNLSFLSCGIALWVGDHVSDPDKMFY SSPEALAKLGANMQMEHDVLNIDPATKTVEVKDLKTGTVTTDTYDKLVYTTGSTPIIPNI PGIHDSNVYLCKNWSDAKTLKDLAPSIKSAIVIGAGYIGAELAEQFALTDKEVTLIDGLP RVLAKNFDATITDRVEKLYTDHGVHLALNEMVTEFAQADQGIKVTTNKGDYTADIAILCT GFRPNTDLLKDHLDTLPNGAVITNAYMQTSDPDIFAAGDTATVHYNPTGKNDYIPLATNA VRQGILVGKNIMTPTEKYLGTQSSSAVELFDHAIAASGLTVEGAHARGLELDSVTIEQDY RPDFMLTTTPVLCSLTWDPKTHEVKGGAFFSKHDISQSANVISLAIQTHMTIETLAMVDM LFQPNFDQPINWVNAVAMAAVAKAKKKTTTPVA >gi|225002468|gb|ACIZ01000111.1| GENE 17 16742 - 18535 1524 597 aa, chain + ## HITS:1 COG:SP0478 KEGG:ns NR:ns ## COG: SP0478 COG1455 # Protein_GI_number: 15900393 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 1 586 1 559 559 568 47.0 1e-161 MQVIVKRLEKHQALFEKISRNIYLMAIKDGFLAAMPIILFSSIFILLSNIPPLIGIKVPV DLNAWFNKIYNYTMGFVGFYVAGTTAKALTGSMNQRIKGGRFLNNTSTMMASMVGFMLLA IGTTSKGNFLPTFFGTQGILSAFVAAFVTVWVYKFCVERDLTIKMPKEVPGAISQNFRDI IPFGAATLIFSLIDVASRAALKVPFSAIIATVLAPVFKGAETYPGMMFIWFLIPMFWFLG VHGPSVVKPALESALFGNTTANLDLFKAGNFPYHALTENFGNFVGELGGTGATFIVPFLF MFFMKSKQLKAIGKASFIPVMFAVNEPLLFGAPIILNPYFLIPFVLAPVVNVVIGKAFID FHIMRGFMYFMSWALPGPIGAFIDTNFQWTSLLLMAILLTVDALIYMPFIKAYDAELLEQ EAAVDAGTATAAATAGASEVTAEADAATAQEFPEPEEVKQAETAKQEEANQNPAAGKKLD HELKVLVLCAGGGTSEQLANALTEGAKEYHEPIVASAGAYGSHHDILPNYDLVVLAPQVR TYYSDLKHDTDRLGIKLVATKGQQYIALTRDPEKALDFIVENYKDVEKKPQDSSDSK >gi|225002468|gb|ACIZ01000111.1| GENE 18 18589 - 19458 664 289 aa, chain + ## HITS:1 COG:SP1187 KEGG:ns NR:ns ## COG: SP1187 COG3711 # Protein_GI_number: 15901052 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pneumoniae TIGR4 # 10 278 9 277 278 184 37.0 2e-46 MLLKVKQVYNNNAVLVDVGNGKEAILQGKGIGFSKRKGDDVDPKASSEILYLNDTQVKNH FTSLLKDVPIDIVVATFGVIGMAKKKYHYPVLNYIYVTLTDHVFQMYKRLTAGKYQASPA PDIRDRYPLPYQIAADARRQLNHDLGVQFPEAEIKNIALHFINAKRVDGELDPTVTLTAR VNAIVTQVFAKYGLNRNFANQNYFDRLMIHLQYLVERLNTNEQDEADLGPEIGQDFRRLY PKSFTIATEICTELEKALQIKLNENEHVYFIIHIQRLIQEPQTLPPEYP >gi|225002468|gb|ACIZ01000111.1| GENE 19 19559 - 19924 446 121 aa, chain + ## HITS:1 COG:SP0476 KEGG:ns NR:ns ## COG: SP0476 COG1447 # Protein_GI_number: 15900391 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 113 1 113 114 129 61.0 1e-30 MATKEEISMTGFAIVAYAGDAKTDLIEALNEARKGNFEHARSLVKEARQSIDDAHNEQTK LLSKEAGGENMDVTFIMVHGQDTLMTTMMLLDTISFTIDEYERLAAIEKQLGIALPTNDI H >gi|225002468|gb|ACIZ01000111.1| GENE 20 19950 - 21374 1143 474 aa, chain + ## HITS:1 COG:SP0477 KEGG:ns NR:ns ## COG: SP0477 COG2723 # Protein_GI_number: 15900392 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 7 470 5 469 470 561 56.0 1e-159 MTSLLNRVQSLPKGFVWGGATAAYQVEGATKVDSKGKTMWDDYLKAQGRFSPDPASDFYH LYPEDIELAKLYGLNAIRVSIAWTRIFPDGYGEPNQAGVAYYHRLFKCCLDNGITPYVSL HHFDSPKTLFDDGDWLNRKNIDYFVDYVDFCFKEFPEVKNWFTINELISLAFSQYIQGNF PPNHHFDVTSAIQAQHNELLAHARVVNLFKEKGYQGRIGLIHVLQPVYPYPDTPANEHAA ALEDAFMNRFLLDGTFKGEYTPETMALINELLKANHAKLEIEPGDMDVLKQASTQNDYFG MNYYQPSFVAAYEGESTNSFNGTGEKGTSSFKFQGVGQHVKNPDVPTTDWDWNIYPAGMY DMLKRVAREYPNSKTIYITENGLGYKDKYEGIGNLIEDDKRIDFIDQHVAALLKARSEGV DVQGYFVWSLQDQFSWANGYNKRYGLFYVNFETQAREIKKSALWFRELGKTLKN >gi|225002468|gb|ACIZ01000111.1| GENE 21 21433 - 22281 601 282 aa, chain - ## HITS:1 COG:no KEGG:LC705_00316 NR:ns ## KEGG: LC705_00316 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 282 1 282 282 518 100.0 1e-145 MNYFPIIRGKQFDLAAVSELATHQQLPATVTPILEPVKDIPGVSKATRAFSRAQHAAYVI QNPQVGTYRLLATPRHLPNISGTVQQARIFDAQPAPLIIATTAAQAKLLPRRQLALVPDE ARVRQLALPHAVYLNDHFTVYPHTSDYGLLQDEFYQYPPLMLPGIGFADYPLATADYFEH GYPQRALAIHLVYPAADGSLRLHHFVSVNNDDFTNPQAKFFEILVQLAAWLPHHPDAQTL GTKALMAAAAQHHFPGLGVVRKFQLMHHLEMIGRWLASTATT >gi|225002468|gb|ACIZ01000111.1| GENE 22 22278 - 22958 572 226 aa, chain - ## HITS:1 COG:no KEGG:LC705_00317 NR:ns ## KEGG: LC705_00317 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 226 1 226 226 429 100.0 1e-119 MKTQLTRDLERTLYAYWQAQGATAVEEVTMPDDFGIVDTLVRQKQQSETIWRCFELKVTK ADFHSHAQLSFVGHYNYFVLPQRLYKAVSAEIPAGIGVLVYQPFSKAAIKASAVPVVTPG TLTIAKPARRQTLQVPENQLTDRFIASLNREVVKAKQVVKGLGQFSTADLFTELRKRTAD YDIYHPDKNLYDQFVDELNNTTITALQEEIDALTAELATLKMARLS >gi|225002468|gb|ACIZ01000111.1| GENE 23 22936 - 25320 1819 794 aa, chain - ## HITS:1 COG:lin0195 KEGG:ns NR:ns ## COG: lin0195 COG1199 # Protein_GI_number: 16799272 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 1 784 1 776 779 639 42.0 0 MAHNRIGIREFVELTVRTGDLNPVTSNSNNTAMIGSQIHRKLQAAHRKSDYEKEVYLKTT VTVNDEDYQLEGRADGVWTENKTLTVEEIKTSARSWEECSQNTKDRYWAQARIYGHLLCQ QRHQDHAVITLVYVQTSTDTVSRFTETKSAAELADDFTDLLDEFTAWLKLRSDIIKQRNA SIATLKFPFPQYRTGQHEFAAAVYKAIYSRARLFVQAPTGTGKTISTLFPTIKAMGSGLI QRAFYLTAKQSTRRVAEQAMALMADAGLRAKSITLTAKDTITFADEPDDPSQNPYMLGYY DRLKPALHDLLEHEDRLTRSVIEAYARKHTLDPFEFSLDASLFCDVVICDYNYLFNPLVF LQRFFSEADDSQFFLVDEAHNLVSRARDMYTASLTNQDFIDLKQALTPFKGAALTKVRRT MTRIVTTMNTLADQLLNGQSLIFQAAPLDDLTQVLTRFTETVHDWLAEPPTPALQPAVEL VLPVFFLANQYLRIGDFYDDTFKTEIAKEHDTIMIKMLCLDPSHFVDDALKKGRGTVLFS ATLSPMPYFQKLLGGAEHSLAYTLPSPFTPDNQAVIVDASVHTTYRRRAQDLPPLIASLT TLVRAEAGHYLFFFPSYAYLKMAYEAFTAANPDLKTCVQENAMNESERQAFLDHFKAGSE PVIGFAVLGGIFAEGIDLKGTQLIGVAIVSVGLPGINPETDQLRAYFDHNAGQGFAYAYQ LPGFNNVLQAGGRVIRGAKDVGVILLIDERFITPRYARLFPDHWTHAQISYNPTQLAQLL THFWEAHHENPTHA >gi|225002468|gb|ACIZ01000111.1| GENE 24 25527 - 26816 1273 429 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 36 427 18 415 419 120 23.0 6e-27 MKKTSFWRLLGFMGAILLLLTACGKQGSAAKSSSSAPVKITYWHRMTGTYDKSLNKLITK FNNSQKKYKVVATSQGSYNALQQKIMAAGKSKTLPTMAQSPYTNIGDYVKNQLLLPFDSE MLNGSNKLSNRQLKDIYPSFLAAGKYDGKYYGLPFSVSTSVLFYNKKLMSQYNISMPKTW ADFAADQDKLKGTDINAIELDQSYDVALEGMAYGAGSQLITPKLKANLNAPKTLAAVNQI LDLRKSGALKTAGEDQYFSVPFANGKAVFGIGSSATVPVLLQQAPKSLDWGTAVIPEYEG KRSNPLNGNYNVLFKGASKAQQAGAWAFQKFLLKSENAAQWAKASGYVPVTKSASNSATF KAYLEKNTQYKAAVSAVSQSFASTVFAGYTDYRNDLMSTVDSTLTKNISGETAFDNLQKQ TDKILEENK >gi|225002468|gb|ACIZ01000111.1| GENE 25 27013 - 27663 623 216 aa, chain + ## HITS:1 COG:no KEGG:LC705_00320 NR:ns ## KEGG: LC705_00320 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 200 1 200 216 284 100.0 1e-75 MEINVHKFQEAILAGTFEHTAVHVTAAAFKKDGIADALTKVFADVRAAIEKDQLIQADLV VDFPEPTTITVETGIINLPFANVNKIPNFLEPDEIVPVRVYLIVASPFVNVSGLRIDEAA TAADYLQDFDTINAQMTASVQEKLEHIQTEMAKPKETVKEVPANKQKTTAKKTTRRATTK KKTTTRKTTKKSTSASKAAPKRTTTKKTTTRKTTKK >gi|225002468|gb|ACIZ01000111.1| GENE 26 27961 - 29895 1368 644 aa, chain + ## HITS:1 COG:lin0445_1 KEGG:ns NR:ns ## COG: lin0445_1 COG3711 # Protein_GI_number: 16799522 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 8 482 9 492 508 221 29.0 3e-57 MKDKKLLILEFLLQHGTVHYDQIAAATGLSERTIGNYLNRLDGELRPYNVKLVRKRNVGI RLDGPADQKAHLLRSVHGQEGFASQSARVHYLMIKLLLTTRPCTLSKLADDLFVSRRTID NDFKVVKQIFAQNQVTVHTSRRGIQVTASEANRRHMLAKLLRQYWGESLYIAKQKDGEVV QQIQLPHYLNHLVNPATTKAVMQSLTEFLKQSSLIFSDYALQSLAIHLIIACERPKKEQP TAIHLTPMLPETKQLLALVSKYVHQTLDAANAQQINAHIAALVDRQVSGAPAASIEDQTT PELRRQIASWLTQISPDKRLLEDLSVHLSGALVRVAHGMSIPNPYTEEIKRNFPMAFDAA AQLSMTVAKHYHVQLNDDESGFLALHFESFFERQQVADRISTVVVCSSGVGTSRLLAQRL EERFREKLVITRTIGLAELMRHAIPESLIISTVPIQGMRQPVVTVNPLLLQHDVEKVSQQ ADRFRFGTEGDAFLGLLEPALIVPNLPSTDRETALSTLIQRLTQAGVFEDASLPLKLAED REKLATTAMGLVAMPHISPEMVRRPAIALGLAPDGLDWAGQKVKVIFFLAVTATVPGDQR GIYQVINRLIDDQRFCEVLAQSQSTTEAVKALAEYIHKELIEDE >gi|225002468|gb|ACIZ01000111.1| GENE 27 29888 - 30343 441 151 aa, chain + ## HITS:1 COG:RSc0406 KEGG:ns NR:ns ## COG: RSc0406 COG1762 # Protein_GI_number: 17545125 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Ralstonia solanacearum # 7 133 10 133 151 80 36.0 8e-16 MNEVNVPTDVHTDVAVPSDKHAALGTIATILSAQHPISADELRTNLIAREDESTTGFGNG VAIPHAKVNGLTDPFVGVVTFKQPVDWGSLDGQPVSIAIVLVMPNQNGADKVHLKMLSKL ARKLMDDDFIKALKAAQHDKDQMTKVLNEVL >gi|225002468|gb|ACIZ01000111.1| GENE 28 30363 - 31805 1671 480 aa, chain + ## HITS:1 COG:BS_yjdD_2 KEGG:ns NR:ns ## COG: BS_yjdD_2 COG1299 # Protein_GI_number: 16078266 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Bacillus subtilis # 125 471 4 348 367 270 45.0 5e-72 MPSFVGVTKCPVGIAHTYMAAEKLQKTGQSDGYKVKVETQGASGTEDTLTADDIKTADFV VLAIDVAIDGMERFVGKRVVFSTTAEAIKDPQKLIDAGKHAEVYTGEKQHGDEQETSDVD DSGHEQSPVIKQLLNGVSHMIPFVVIGGLFIALSIALGGHATAKGMVVAPNTIWSTMNQI GTIGFSLMIPILAGFIAYAIAGRAALAPAMVGAMVANTPAILGTKAGTGFLGAILVGYAA GYLTKWMNSWPIPKSLRAVMPIFVIPLLGTAVICAAFVYLLGSPISWLMTALQNLLTFLS KSPSTSIVLGLVLGAMVSVDMGGPVNKVAFLFGVASITAGTPEIMGAVACAIAVPPLSAG IATLFKSELTTNEEKTAGVSAILMGLIGITEGAIPLATAHPKQVFPGIIIGSGVASAVGM IFHITDAVPHGGPIVGVLGATNNLGLFFLAILIGVLVSTAIIVLLKQHAVAHQKKLAAAK >gi|225002468|gb|ACIZ01000111.1| GENE 29 32061 - 33032 960 323 aa, chain + ## HITS:1 COG:lin2215 KEGG:ns NR:ns ## COG: lin2215 COG1482 # Protein_GI_number: 16801280 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Listeria innocua # 1 319 1 315 318 347 54.0 2e-95 MTEPLFLKPYFNPKIWGGRKLKTEYGFDIPDGKIGEAWIISGHPHGPATIENGPLKGKTL RQAWHEDPAYFGPQHSQEFPLLVKILDAEASLSVQVHPDDAYAAAHEAKGELGKTECWYI LKADPGAYLIYGHHAKTHEQLKEMIEAGDWEHLLRKYPVKTGDFVYVPSGTIHALNKGIV ALETQQSSDTTYRLYDYDRTDDQGHKRELHIKQSLDVTTVPFHDPKLHITKENVTGGQIT TFVKPPLSPHFAVYRLDVDGTMSFTQQAPYTNVTVLDGTGTFTADGKDYPIKTGDSFLIP NQIKTWQFTGKLAIVTSTPGADA >gi|225002468|gb|ACIZ01000111.1| GENE 30 33426 - 34142 609 238 aa, chain + ## HITS:1 COG:SPy0715 KEGG:ns NR:ns ## COG: SPy0715 COG2188 # Protein_GI_number: 15674773 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 5 235 6 236 240 182 44.0 4e-46 MEKVPLTKQLVDQLEAFIKEKLQPNDKLPSERDLSELYHVSRNTVRSALNELFLRGFIYR STGKGTFVAERFDERTDVSGSYSFTKQMLAMNRQPVTKIQRLEKIAVPPDIAKRMRVDPE TPVYVLDRLRIADQLPMMIERSYLPALTVPDLQASDLAKNPLYDWLEQHYGIHIASVDEA FFAGLVSPEDAKQLRVAPASACLNIRRTTFADTGEIVEYTLSVARADQFVYHVHHVNH >gi|225002468|gb|ACIZ01000111.1| GENE 31 34156 - 35337 1043 393 aa, chain + ## HITS:1 COG:SPy0716 KEGG:ns NR:ns ## COG: SPy0716 COG2222 # Protein_GI_number: 15674774 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Streptococcus pyogenes M1 GAS # 1 389 1 389 399 397 51.0 1e-110 MFEKTTEELTKMGAQITTAEIKQQPELWQEAFANYTRDKEKITAFLKQVTAAANGQTVRV IFTGAGSSQYVGDTVTPYLRAHGDRSKFEFESIASTDIVSAPYDFLEADTPTILVSFARS GNSPESLKTVELAEQVVHNLHQISITCAPEGQLAKKSATEDKTLLLLQPAGSNDKGFAMT GSFSCMTLSALLVFDTASDDDKRQWVQAIAAMGKEVVAREAEIQAVLDQDFERIVYLGSG SLGGLTRETRLKVLELTAGQYATMFDTSMGFRHGPKSFVNDKTLLFDLVSNNAYTRQYDI DVLEEVKDDKIAPSVMAVGTKQDQNFSGDGFYFENGLKDLPEGYQALPDVMFAQTVALLA SIKVGNLPDTPSPTGTVNRVVKGVILHDYSGQE >gi|225002468|gb|ACIZ01000111.1| GENE 32 35414 - 36574 973 386 aa, chain + ## HITS:1 COG:SP2056 KEGG:ns NR:ns ## COG: SP2056 COG1820 # Protein_GI_number: 15901876 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pneumoniae TIGR4 # 1 384 1 383 383 412 55.0 1e-115 MSYYIHAAKFFLKHVTEIGGYLEVTDDGQFGQYLPESAKPEGEIVEQPGKLIAPGLVDTH IHGLLGHDVMDNDWDGINTMSQNLLKAGVTSWLPTTLTGSFDQLNDVCKTIAAHAGEESG AKIQGIYFEGPYFTTKHKGAQNPKYFKNPSEKEYDAWQTSANGLLKKIAIAPERDGAVAF TRYATGDGTVVALGHSDATFEQAKACVEAGATVFTHTFNGMSPLSHRAPGMVGAAMYLQG VDDELICDGHHVRPEVATTLIRLKGAEHIALITDCMRAGMMPDGDYVLGEFPVYVKDGMA RLKDGDSLAGSVLELKDALTNLLAWNAATPEAIIRMATQTPAASCKIDDQCGSILPGRAA DYLVLDADLKLQATYLDGKLAYQAEA >gi|225002468|gb|ACIZ01000111.1| GENE 33 36717 - 38498 1423 593 aa, chain + ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 591 1 588 595 738 60.0 0 MTTFSIDHEFMLDGKPFKILSGAIHYFRVHPSDWYHSLYNLKALGFNTVETYVPWNLHEY REGEFDFSGILDIERFLKTAEDLGLYAIVRPSPYICAEWEFGGFPAWLLTKKMRLRTDDP AYLAAIDRYYTALMPHLVDHQVTHGGNVIMMQVENEYGSYGEDQDYLAAVAKLMQQHGVD VPLFTSDGPWPATLNAGSMIDAGILATGNFGSAADKNFDRLAAFHQEHGRDWPLMCMEFW DGWFNRWGEPIIRRDPDETAEDLRAVIKRGSVNLYMFHGGTNFGFMNGTSARKDHDLPQV TSYDYDAPLNEQGNPTPKYFAIQKMIHEELPEVQQAKPLVKPTMAPASHPLTAKVSLFAV LDQLAKPIAASYPQTQEFLGQYTGYTLYRTQPLISGTDKGTPAKLRVIDARDRVQAYLDQ KWLATQYQEAIGDDILLPEVEGHHQLDLLVENMSRVNYGSKIEAITQFKGIRTGVMVDLH FIKGYQQYPLDLNRASRLTFTEGWQPATPAFYKYTFDLTAPQDTYLDCHGFGKGVMLVNG VNVGRFWEKGPTLSLYVPAGLLHAGKNDVIVFETEGRYAESLKMADHPIFKEP >gi|225002468|gb|ACIZ01000111.1| GENE 34 38691 - 39173 548 160 aa, chain + ## HITS:1 COG:SP0061 KEGG:ns NR:ns ## COG: SP0061 COG3444 # Protein_GI_number: 15900006 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 158 1 158 158 200 63.0 1e-51 MAIIAARIDGRLVHGQVANLWTTKLGATRIMVVDEAASKSDIDKSGLRMATPETVRLSVL DVATAANHILNHKYDSQKVFIVAKRPETFLALVEAGVPIKELNVGNMSQTDKTRSITKSI NVVDEDIETFKKLDAHGVHLIAQMVPGDAAADFMSLLKKG >gi|225002468|gb|ACIZ01000111.1| GENE 35 39186 - 40100 933 304 aa, chain + ## HITS:1 COG:SP0062 KEGG:ns NR:ns ## COG: SP0062 COG3715 # Protein_GI_number: 15900007 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 1 304 1 301 301 268 48.0 1e-71 MIAWWQIVIITLYAGYQILDELQIYSAMSSPVFAGLVAGLVMGDMKAGLLIGASTQLMVL GVGTFGGASKIDANSGTLLATAFSVSSGMKPEAAVAAIAVPVASIMIQTDILARFANTFF AHRIDKMVDEYNYKGIERYFLAGALPWALSRMIPVGLALAFGGGFVTNIAHALNTDWKWL GDGLATAGAVLPAVGFAILLHYLPVKKHFAYLILGFIFTMLFTTLFGNIQTLGTAVAGVA KNFTATFNGLSMLAIALIGFAFAAISYQQSTQLHDSVGGGSEANGGAKAAKKTNDEGEIT DDEL >gi|225002468|gb|ACIZ01000111.1| GENE 36 40087 - 40908 853 273 aa, chain + ## HITS:1 COG:SP0063 KEGG:ns NR:ns ## COG: SP0063 COG3716 # Protein_GI_number: 15900008 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 1 273 1 270 271 327 60.0 1e-89 MMNSNKPAYKLTDKDFRQINRRSLFGFQLGWNYERMQASGYLYTILPQLRKIYGDGTPEL KKMMKTHTQFFNTSNFFNTIITGIDLAVEEKEGIAGEETVVGMKTGLMGSFASIGDSIFA ALIPAIFGAIAANMAEKGNPVGIFIWIAAQVAVMVFRWKQLRIAYNEGVSLVTTMSHRLA ALTNAATIMGVFMVGALVATMINVKFAFAPKIGSVPLNFQNSADMIIPKLLPALIVGAVY WLLGRKHMTSTRAIFIVLIVSVALSALGVIAKG >gi|225002468|gb|ACIZ01000111.1| GENE 37 41050 - 41430 551 126 aa, chain + ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 4 124 5 125 134 141 57.0 3e-34 MSKLVLISHGQLCEELKKSAEMIMGPQDDIATVALLPNEGPEDFQAKFKAAIEGEDDVTV LADLKGGTPNNVAARVLAEGGNFDLYAGMNLPMVISFLNAQMLDMKPDLLGDGKAGVVYI NDIVKH >gi|225002468|gb|ACIZ01000111.1| GENE 38 41732 - 43225 1204 497 aa, chain + ## HITS:1 COG:L78550 KEGG:ns NR:ns ## COG: L78550 COG0438 # Protein_GI_number: 15673437 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 497 12 506 506 509 49.0 1e-144 MNSGTEFSAAQRVMLFKKNKVPAQIVTRNYNPLMIDDVHRIGLEQKDVVNMYDYFQEILD VAPKDVNVRYTEAIDKYQYHIDGVDPNESKIVYHGKTIGKVNIAPGTVGLVGSIEYYNDM NTVVAKDIWDRRGFKSSTQYFHPDGAFGPQVFYDRAGKPKIEITRMNVNGELRNTMYKLL DYQGRAWRFDTENEMFVFFMNELMLKHPGVLINDRPSLISEVAAVVGARGKWQFLHSAHT YKPEQAGGLRNYVDYLQPLFATHMNDFDGVMVPTVEQKQEIDKFFHFKHVVVVPDSYAEP HKLVPAEKRDRNKIVYLGRVSPEKEPQEAVKIFAKAKKDLPDLHLEFYGYSSDQSLDNSL KELIKKLEIEDAVHFNGYQNNDQLAKKLGDAAAVLSTSSSEAFGMNVLQAMSFGVPVIGY QVKYGMKLVVKEGISGYLVPNGESQQGAKALVKLLTDKDKWVDMLESTYESSQKFNAAAA WQQWQAQQAAVPNVFLK >gi|225002468|gb|ACIZ01000111.1| GENE 39 43242 - 44855 1174 537 aa, chain + ## HITS:1 COG:L76469 KEGG:ns NR:ns ## COG: L76469 COG0438 # Protein_GI_number: 15673436 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 534 1 534 541 732 64.0 0 MIFFINSNFNKNNSGIEHAQLKRAGLFRDHHVPFKMIFREWNPRLHEYLNHNGVSDDETL NMFDYYQNAEQVPAKILHADDIDFGFDKLSYAKEPDNHRYLVTRGKLFVGRINYFENDPT ERVSSVEQFDGFGNLYRVDFYDFRGFLSLSQWYTPDNKVGTEVWYKVDGRPVVETFNKYD ANHAFIKTGWRLIEDNGAVYMFSNIDDLMQHFYNNVNEQYWNDKEANVFILDRSHLGDWQ LIHLQRPAYIVMHLHNSHAGDAQDPMHSVMNNFYEYSLIHANDYDAIVSATNKQTHDVRE RFHPTCKLFTIPVGVLPDEQLARPHVAMTDRQPAKVLVTARVAPEKQIDHIVAAIGIAKK DVLNISLDVYGYVDHRDDNRAMKRINAAIEKYHLQGAIKLHDYTNDVGAVQRNAQVYALT SVMEGFNLSLMEALSNGMVGVTYDVNYGPNELVVDGKNGFVVPFGDIKAMAAKFVELFTH PDELQQMSDQAYELSDRYSEANVWKAWQALLGDAKKKDIHYTKEISAGIGDQRIKKG >gi|225002468|gb|ACIZ01000111.1| GENE 40 44979 - 46250 791 423 aa, chain + ## HITS:1 COG:no KEGG:LC705_00335 NR:ns ## KEGG: LC705_00335 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 423 1 423 423 742 100.0 0 MNDKLKIIELLKQQVAAKTAELTPKNIQKITQDIQDLLKILNDVVAIDFIDTTSETSPQQ ENTAVAKPESNAAVAPMITQTAPETKSEPKQQTQPQQPQQPKPSQPKSNPEPETPLLSEH WLNNHKSYIGRFHLDLNGGHVGTIKVSESKLHKMKNPPENGDWVRADEYQDSDSVNYKIT TLKRDPLPTEIVRLKFLPAVFREDVKRWYIEFQSPEHETRQQLLLGDYDVMLFKLKPGDY IDYAYRRGQEINGKIIWRYTDSAAVATRMKQRYAKSANTDADKNTATSKQKATQTANKTV KPAKRRRAVQQVFADKTLLLVCFENSAMPRKVKRHVEERGGKLVLSSHSDSGAMLKKKVQ KSDVVIVTTDFVGHSQMFAAKDEAKRIGKPIWMARNTNERNLLQWYKRHFPNESKPSAAR QEV >gi|225002468|gb|ACIZ01000111.1| GENE 41 46390 - 47586 827 398 aa, chain - ## HITS:1 COG:CAC2970 KEGG:ns NR:ns ## COG: CAC2970 COG1168 # Protein_GI_number: 15896223 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Clostridium acetobutylicum # 1 384 1 377 384 272 36.0 8e-73 MSQFDRLFDRKAGNARKWADQVLAEKFGLTANAIPMDLADLDFPVAPPIHQAIMTRAAVP DYSYTYIPEAFYETVIAWNARRFGLQLEKDWIKLSYGTVPTLHYLVQAFTEQNEAVLINT PAYDPFAEAVRNNHRQLVTSPLMLVDNRYEFDFADMAAKMQRSDVKLFILCSPQNPSGRV WTAEELARVGELCRQHQVLLISDEIHRDIVYPDVTFTSIWQACPAIQSQSILCLSPNKAF NLGGLKTSYVVIPDPAIRARLNAQFVANSITSPNSFAVPALIAAYTDCDAWLDEMVAYVA ANFAYLVNRLQVIPEIQVMPSDSGFLAWLDTQRLFPDETAMKRFFTAADLSCVVGSYFVA DGGGFVRLNIGMPRPLLKEALDRMVATYATWPRIGQEA >gi|225002468|gb|ACIZ01000111.1| GENE 42 47573 - 48652 753 359 aa, chain - ## HITS:1 COG:lin1391 KEGG:ns NR:ns ## COG: lin1391 COG0006 # Protein_GI_number: 16800459 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 1 348 1 350 353 237 36.0 2e-62 MNHLTNLQKAIGAQHLDALLLHDRQSKRYVGALPGSGVYVVVTPTQAVQIHDGRYRAEAA DTQGFTNIEVPQGSYLPQLIDFLTSQQSRRIGLVSSGFSIKEFQTLAAQNWTLSLADDLI MEQRMRKDEAEIAAVAAACAMTDKIFTQLLPHIRPGISEQTLNAWLHFYTLQAGATGMAF DPIIASGPRGAFPHGRPSERILQENELITIDFGIVLADYQSDMTRTLSIGKPPAELAAVH AAVLDAQQTAIAALKPGMQGREVDAIARGVLTAAGYGDCFTHGLGHGLGLGGDQPILNPR SQTVLAPGMIVTIEPGAYLPGIGGVRIEDDVVITETGARVLNQTSRQMNQLEVLEHEPV >gi|225002468|gb|ACIZ01000111.1| GENE 43 48760 - 50085 946 441 aa, chain - ## HITS:1 COG:lin0874 KEGG:ns NR:ns ## COG: lin0874 COG1455 # Protein_GI_number: 16799948 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 3 441 11 441 441 223 32.0 5e-58 MFNKFEAFMNRFFMPIAHKVDNQRHLSAIKAGMVAMTPFTILGSIFTIIPALPNMLGPKN AVSQFITGNAALFDLPVKLSIGMIGLYACLSIAYNLGNHYKLYIPGCVTLSGFAFLMMVA TFNKTGQLDVANLGARGLFTGMIVALLTVELYHWCKTHHLTIKMPDGVPDFVSRSFELIP VTLITGGAFIAGRFIFLNLAGELPPSILTRFLAPLVGSMDNPWAVLALNFAICTVFFFGI HSSVFSPITSPIMVTFIAENIAAMNAGEAIPHFYTAGAVSSFFGFTGCGISIGCVVACML SKSKRYRKIGKISLFPALFGINEPILFGAPIILNPIMFIPHVFGGAIIGTLPMFFMHWGW IAKPIFNPPYVGVFLEGFLINGDYRTILANALQLVLAIALYWPFFKVMERAELKNEAKKA SQKSIFSKEDEDTLAGLDLDF >gi|225002468|gb|ACIZ01000111.1| GENE 44 50120 - 50458 486 112 aa, chain - ## HITS:1 COG:lin0873 KEGG:ns NR:ns ## COG: lin0873 COG1440 # Protein_GI_number: 16799947 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 1 101 6 106 111 74 35.0 4e-14 MRILLCCAGGFSTNMLMQNMAKVVKDSRKLNEADFHFNAIPVDGLEEEIDNYDIVLVGPQ IGHKTGYIGEICDPRHIPYAVIDKDVYGQMDGATVMKLALVTHAKYQKKHAG >gi|225002468|gb|ACIZ01000111.1| GENE 45 50525 - 50842 431 105 aa, chain - ## HITS:1 COG:CAC2965 KEGG:ns NR:ns ## COG: CAC2965 COG1447 # Protein_GI_number: 15896218 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Clostridium acetobutylicum # 6 102 7 101 104 68 41.0 2e-12 MATTQELEIMQLIANAGESKTKAFEALAAVKTQDFDRARSLLAESKAIDVAAHNAQTAMI AREFAPDQTPEPVSLLMVHAQDHYMTSQLARDLIETLIEVFETRA >gi|225002468|gb|ACIZ01000111.1| GENE 46 50926 - 51966 702 346 aa, chain - ## HITS:1 COG:ypdE KEGG:ns NR:ns ## COG: ypdE COG1363 # Protein_GI_number: 16130316 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Escherichia coli K12 # 1 346 1 344 345 259 44.0 6e-69 MDLQLMAALSNADAIAANEDEVRAVLRHHLASYGLTSQTDGLGSLIFTKEAADPQFSVMI YGHMDEVGYMVRTITPEGLLRLMVVGGVKPAASHWQNVRITTAAGHKLPGMVIRDDTLPA FDQVLCDVGANSADDVAALGIAIGDMVTFATEFHGYAPDGVFGGKALDDRLGCYVGAQLL AELADEKLPFTLHFAATSSEEVGIRGAKTATQLIKPDLAFIVDVATFQNPRERSEVNQRQ VGKGPILTHFDRTLAPNRHLQQFVKATAVAAEIPLQLDMFNGGGTDGGEAHKVGSGIPTV VTILPCRYGHCAQSLAHTRDVDQMVALYAAMCRQLSAKLVAAAHTF >gi|225002468|gb|ACIZ01000111.1| GENE 47 51951 - 53744 780 597 aa, chain - ## HITS:1 COG:lin0325_2 KEGG:ns NR:ns ## COG: lin0325_2 COG1762 # Protein_GI_number: 16799402 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 449 583 1 141 143 70 30.0 7e-12 MREHLIIQALQANGVMSAMALAKAVGVSRRTLQNDLRLLNHAASGFQIRLIRGRGYELQI TDTKLLAAYLATLAGQAQPKMPAKRLPELLQQLLSTTNYLTVAQLATTQLISTKQLQRDL RELDKLLVGTPLSLIRKAHYGVRIQGNWQSRIHALQQYGLPPNHATLTQQLQPLGLDPAV TAQFASEIGWSLVVTGQTLHAPPADTDFAALLAAIRLSPEAWHFLTVSFAAKRKQLTTRL DHKRLKVKLRAYFTTLDARHETNFATHPEFLSLMYFHVLALIGRLKEHQSLAGLSLEPLA RDYPIAFNWAVQFAQWLSREYQIEVPKTEVGYLTTHLLVPLEQAHEKWSRHGYRIAVICG TGGGIATLLSLRLRRIFPEAVIQTFGLNELKAIHQLSPDLLFTVTALNESFDCPVIQIDE VASDLDFASLRHELSMASQHHATASLADLLQPTLFFPDQKPADYRTLLTSLTAKMAAYCG QVGYAASVLQREDFLATVYDNGIAIPHPLSFSARKNAVAVMLLPTGVKNSARPVRIVWLI ALKQDQLPLHRTLTTQLAALMQKPDLINQLVQQTEFSAFQQTLRTELEGAETTWIYN >gi|225002468|gb|ACIZ01000111.1| GENE 48 54149 - 55396 1274 415 aa, chain - ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 10 411 9 411 412 399 48.0 1e-111 MTIELDLNQIQTDFIRYAKINTRSYPGRDTTPSTPGQTELAKLLVTQLQELGLQDVGLNQ ENGFVTATLPANTDKPVKSFGIIAHLDTADYNAENVQPQVHPHYDGKPINFANGLSLTVE QFPALKQYFGQTLITSDGTTLLGVDDKAGIAGAVATARYLLAHPEVKHGLIKFGFGPDEE IGVGADKFDAKGFATDFAYTLDNGDPGQIEYETFNAAQATVTIEGTSVHPGEAKGLMVNA NTLGRQLDAALPAFDRPEFSAGHEGYFLLLKFHGEISDAELVYIIRDFDHQQFEARKAYF QKTIDELNAQFDHPRLKVEMHDQYYNMADIINKDPYPLRLAEAGIKAAGLTPKTVPFRGG TDGSKITYQGIPTPNLFNGGINFHGPYEVVSTEAMGKIAETLIHMAQLNAEGGIA >gi|225002468|gb|ACIZ01000111.1| GENE 49 55696 - 57144 1273 482 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 6 482 68 549 549 326 38.0 5e-89 MTNTQEGIYRLTDKGQKPQLALAKKVTTSQDGMTYHVTLRNAKWSNGDPITAQDFVYSWQ RTVDPKTKATDAFYFAPVKNANAIIKGTKPASDLGIKATDKHHLTITLENPTAYFKKLLA FPLYYPQNQKVVEKYGKKFGTSATTQVYSGPFKLTKWNGTGDSWTLVKNPQYWDKKHVKL AKINETVIKDVQTGMNLYQTKKLDSIVLTGEQAAAHLNDKDAVNRISSNMTRVDLNQKQV PAFKNVKVRQAFSMMINRAALTKKVLKDGSKPALGFVPIGLHTNQKTGADFAKTTQVKSA VAYDKAKAKKLFEAGMKEAGQSQLNLTLLADDADVSKQVAEYLQGAFEDLPNVKVTIKSI PKAQRLQAMMSGNYDMVVTGWQSIFADAYNFLDVWISNSSYNTSGYKDAKLDQLLSETET KYGNEPQKRWTMLQDAEKILMKDQGTLPLYQANNLELLRSSVKGVSFNPNGTPYDFKTAY IQ >gi|225002468|gb|ACIZ01000111.1| GENE 50 57232 - 57876 547 214 aa, chain - ## HITS:1 COG:MA1701 KEGG:ns NR:ns ## COG: MA1701 COG3153 # Protein_GI_number: 20090553 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Methanosarcina acetivorans str.C2A # 2 202 14 214 217 152 35.0 6e-37 MTTNITIRTEQPSDYRTVETIHRNAFWNLYVPGADEHYIAHILRDHADFIPELDLVITLD GQIIGNIMYTKSKLVTATGLEKPIVTFGPVSITPAYQRRGFGKQLIDASMQQAADLGYGA IVIFGDPDNYVARGFQSCQKFNVWAADNTQPTAMLVKELQPQTLAGQKWFYHESPAMTYD PADARKFDEGFPEKAKHHQASQEAFYILSHSILK >gi|225002468|gb|ACIZ01000111.1| GENE 51 58042 - 58254 162 70 aa, chain - ## HITS:1 COG:no KEGG:LC705_00346 NR:ns ## KEGG: LC705_00346 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 70 1 70 70 102 100.0 4e-21 MTKTTNEQTQAVIAVTTSITDKQVHLSHQCVGYRQFAHTHHLLSDSGTTAHYPYLLASAY QISRYLAGDA >gi|225002468|gb|ACIZ01000111.1| GENE 52 58885 - 59037 116 50 aa, chain - ## HITS:1 COG:no KEGG:LGG_00362 NR:ns ## KEGG: LGG_00362 # Name: nisT # Def: cobalt ABC transporter ATPase and permeases # Organism: L.rhamnosus # Pathway: not_defined # 1 50 552 601 601 100 100.0 1e-20 MADKVLFLKAGKVVGFAPHQVLMQTNAAYAEMYRMQAEGYVKGLSQSETE >gi|225002468|gb|ACIZ01000111.1| GENE 53 59088 - 60689 1260 533 aa, chain - ## HITS:1 COG:all4955 KEGG:ns NR:ns ## COG: all4955 COG1132 # Protein_GI_number: 17232447 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Nostoc sp. PCC 7120 # 9 502 24 517 606 211 29.0 3e-54 MVKTLVNFLNLYWKSLREFFKASPLYATILFILVPIQSVLPAATIAGSQALLTALSHHDS PLAPAVVWSVSVIALGIAGPVVTLTQGLLTDQLVAHINLALMAHAKKLKGIATFETATYY DELEFIRSQASWRPVNLIVFGLDLLRGTLSIVSYIVLLSQFNFVVILLVLLPIIPQAIFT YKIQQDAFETMVDRSPQSRKMQYYAKTLLANTDAKEVRIFNAFDFFIKKYQHTFQQIHRR LSQVRLKQMRISGVYAFINGVALVASLYLVIVGIQNGNYPVASLLTFAVTVVSLSQSLGS LVESSSLLYDTLLFMQKYYQFLNKKDALTTPQNAAALPDKPFAIEFRDVSFAYPETNHKT VLQHVNFKLDPGTTVAVVGENGSGKSTLVKLLLRLYDVSSGQILIDGTPIEQLNVDAYRH QIRVVFQDYSKFNLSLLESVGIADLPNFNAQNVELALKKASAWDNFSNQQINLQTHFGKQ YEDGIEISGGQWQKIAIARAFLNDDHAHLRSWMNQPLQLIRAVSLKFINILPS >gi|225002468|gb|ACIZ01000111.1| GENE 54 61263 - 61952 270 229 aa, chain + ## HITS:1 COG:no KEGG:LC705_00350 NR:ns ## KEGG: LC705_00350 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 229 1 229 229 400 100.0 1e-110 MLAKLRTLNLLSVFLAAKGTLLICCALYFCFLLFSTLTSTFLIPANDLLGDISSISKGEL WRIVTSSVYFSDWEPLIKTVLAILMIGPFIEWKIGSRAFVISFFAASWIGAGLICFGFNG IIQSTVGLNTYIDAFYGATLAVYALFPLAGLVFAIKSPPFSLLTKLVTTGAFLGDLILVF WANANRSDPAIVVRIGQLCGVLGGIVCALGIFTLKNLKQRHFFLAKSNN >gi|225002468|gb|ACIZ01000111.1| GENE 55 62004 - 62711 101 235 aa, chain + ## HITS:1 COG:no KEGG:LC705_00351 NR:ns ## KEGG: LC705_00351 # Name: not_defined # Def: peptidase S54, rhomboid # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 235 1 235 235 449 100.0 1e-125 MLAKLRRVNLLSVFLAAKGTCFICGILVLCYLLFYVLLNVYLIPSGDFLGNIPAVLRGEL WRVVTSSVFHYDWENHLLPNMFAIIILGPFIEWKLGKAAFVISFFICSWAGELLFCFGFG GFIQSHLGIGSYVERFNGVSMSVYGLFPLAVLALVTSKPAFSPLTKVVAFGVILYVFTTG YWPYQELSDTRIYEQIGHSCGFLVGIGCVLVILIQRNRKKRLTHLCEPIEALRGD >gi|225002468|gb|ACIZ01000111.1| GENE 56 63090 - 63656 580 188 aa, chain + ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 180 2 181 186 157 56.0 1e-38 MDKWSLRDVVLLAFLAFLFGGVFMGADAIYAVLAAALTPLGYAPFANEILFGMWVMAAPM TTMLLRKKGSSILGECLAALAEMLYGSYFGPAVLLSGFVQGLGSEAGFIVTRYRRYDTVS LLLAAVGTTLFSFTYEYFKLGYGAYSFGMILGLVTVRLLSVIFFGVVLVQLVMKLYEQAA GVKRLAGR >gi|225002468|gb|ACIZ01000111.1| GENE 57 63663 - 65006 1087 447 aa, chain + ## HITS:1 COG:SP0720 KEGG:ns NR:ns ## COG: SP0720 COG1122 # Protein_GI_number: 15900617 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 447 1 442 461 280 38.0 6e-75 MGIRLKDLQFHRETPLFDHLSFEFATGALTVLTGDSGSGKSTLLNLIAGFAPMTYSGTIL LDNHDLSGASMQVKAQQVGMLFQNPDQQFTMRTLSGELAFALENLGLSATAMIQRSKQAV ALGDTQALLNRDLQTLSGGEKQRAALTVLLAMNPPILLLDEPFASIDPVSRQQLITKLGR LRDAGKTIVIADHDLRDYAGVADALVALKDGQLTRLPLTTLTTIPTQFDLTQANAATVSL LRFDQVVCARNHQILVQAPTWQFNTGITTLTGANGSGKSTLLRAMVQLHPYRGRMFLDSR RLRRTKKLYRTMTLAVQDAGKQFVTLTPADELAFGPALTPKVRKRQAAALAYLGLTEKQT GSLYHLSEGQKKMVQLIAMLSLERTFLLLDEPFSGLDERACAFFAAWIKEKAAKQAFLIV THRLAPLAGISHQHVALADHRLHILQE >gi|225002468|gb|ACIZ01000111.1| GENE 58 65011 - 65658 486 215 aa, chain + ## HITS:1 COG:no KEGG:LC705_00354 NR:ns ## KEGG: LC705_00354 # Name: cbiQ # Def: cobalt ABC transporter permease # Organism: L.rhamnosus_Lc705 # Pathway: ABC transporters [PATH:lrl02010] # 1 215 1 215 215 354 100.0 1e-96 MPVKKTNAVNLSLFILLLTLEISFSHAVSLNVALIGLASGFLIWRRAFKSLVVLALLPLI PAASTYWAITLHGTDTTYALLLWVRTYAFTALGLVFLIGVDLEILLLWLEQHKLSPNFVY GLLVVIHALPQIMHEVAAIREASLLRGQKLHAWSPMIYVKVIFVAMSWQDQYVKAMYAHG YTEGATRTVHQTIRSSWRGLIAMVGGFVLLNLIAR >gi|225002468|gb|ACIZ01000111.1| GENE 59 65772 - 66464 539 230 aa, chain + ## HITS:1 COG:L0228 KEGG:ns NR:ns ## COG: L0228 COG0819 # Protein_GI_number: 15673761 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Lactococcus lactis # 1 218 1 218 218 215 50.0 5e-56 MKFSKIARQQVVPYWEGSFSHPFLTELQAGTLDPAIFRYYLIQDAYYLKHFSRLYALIAQ QAQESDLKAYAAQSAAGLTEGELAVRRDFFDTLMITDAEVAATAIAPTAYHYVSHMYRQL VAGTPHVAIAGMLPCPWLYQEVGQYLAQRQSPVPIYQRWIETYSGAANADDQQAAVALVN RLYDHSTSAEQQQMLTAFRISTQMEYSFWEMAYHLEKWPEGSRNNDAKSR >gi|225002468|gb|ACIZ01000111.1| GENE 60 66445 - 66945 396 166 aa, chain + ## HITS:1 COG:SP0723 KEGG:ns NR:ns ## COG: SP0723 COG4732 # Protein_GI_number: 15900620 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 3 166 5 168 174 173 59.0 1e-43 MTQNRVKRLAILAMMIALDVVLSPLFRIEGMAPMSSVVNIVAAVVMGPLYATVMAFACAL LRMTLLGIPPLALTGAVFGALLAGIGYRIGRRSVWAAAGEILGTGLIGSLLSYPVMVWFT GSSQSLYWFVYTPRFFGGAISGSLIALFVLYELDHSGLTRRLQKIF >gi|225002468|gb|ACIZ01000111.1| GENE 61 66996 - 67484 522 162 aa, chain + ## HITS:1 COG:SP0724 KEGG:ns NR:ns ## COG: SP0724 COG2145 # Protein_GI_number: 15900621 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Streptococcus pneumoniae TIGR4 # 11 151 2 142 267 134 47.0 8e-32 MNQSVTTSFKQAFESALPLTSSPLVQCITNEITVESMANALLYIDAKPVMADAVQEFPEF FAQNNALLLNLGHISPEREKSLLAAGSFAAETHTPVVVDLVGVSATQLRYELGHQLLANH PNVVKGNISEMRRFSGLKSTGRGVDGSQLDQGLLHFPNLLKR >gi|225002468|gb|ACIZ01000111.1| GENE 62 67490 - 67834 167 114 aa, chain + ## HITS:1 COG:SP0724 KEGG:ns NR:ns ## COG: SP0724 COG2145 # Protein_GI_number: 15900621 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Streptococcus pneumoniae TIGR4 # 5 112 158 264 267 84 44.0 4e-17 MTRRFPATTFLATGQTDLVVSAHGQWRLENGVLQLDRFTGTGDIVGALIAALLGVGLTND AAVVVAVSYFNCCGEVAAAENTGGLASFRERTLDQLSLLATHQDWIQKVKGQAL >gi|225002468|gb|ACIZ01000111.1| GENE 63 67831 - 68460 595 209 aa, chain + ## HITS:1 COG:SP0725 KEGG:ns NR:ns ## COG: SP0725 COG0352 # Protein_GI_number: 15900622 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 210 244 64.0 1e-64 MNAEALQLYLVTNRYADSPEVFLAKIAAACENGVTMVQLREKSLTTRDYYALAKQVKLIT DRYRIPLIIDDRVDVCLAVDAAGVHIGDDELPVAVTRQLLGSDKILGVSTKTVATATAAV AAGADYLGVGAIFPTQTKAAAPLTSLATLKAITAAVSVPVVAIGGIKADNLDTFKATGIA GVAIVSEIMQAPDTAQKVQTLSAKLKEVL >gi|225002468|gb|ACIZ01000111.1| GENE 64 68462 - 69313 743 283 aa, chain + ## HITS:1 COG:L0200 KEGG:ns NR:ns ## COG: L0200 COG0351 # Protein_GI_number: 15673245 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Lactococcus lactis # 8 268 6 266 267 265 55.0 9e-71 MTINSTPQVVTIAGSDSGGGAGMQADLKTFQARHVFGMSIVVALTAQNTYGVQASLPIPG DFIDAQFQSLAADFAIKACKTGMLADSEHVNAVVRNLKQVNFGPLIVDPVMVAKGGATLL APEAVATIKQELLPLADVVTPNLPEAEIIVGHPIKREADMIAAAQTIQELGVKNVIIKGG HRQDAQASDFILLADGSSFWVRSPRIATGNTHGTGDTFSACIAAELAKGESLKKAIITAK AFLEGAISQGIFVGHGHGPTNHWATLSEDVQVSAVKSSAGLQG >gi|225002468|gb|ACIZ01000111.1| GENE 65 69703 - 71151 1271 482 aa, chain + ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 9 475 6 472 473 326 39.0 8e-89 MQENELTPQRYMSWPVLSLLVFITVIGFENIFYPFQNQGLSVVINWVILLIVYIVPYALI AAQLGTTFTRADEGGGLATWMRRTLGDTWGYWTSWIYWAQTLPYLVDVSNAVIVALSWMI LGDNSLGKRMSNLTFGLLTFAIILLFIVLENLFSRSLEVMSLIGGAAMFLMAVLFVALTA AGLAKGMPSATHFSWDAFRPHFSLHYFATTGLLIFATSGAELGATYIAQLRNPKKQFPKA MWALALMTGFLVIFGSLALGVWFNANHLPDDLKMNGAYYAFSMLGKAWGWGKTLMYLFAV TQLLFMLAQLAVLIDASSRVLSADTAMRFMPKWLLQKNKQGRPVHSYIFTASLCLFLLLL SGTLPNINAIFNWLLNLNGIVSPYKTALVFVAFLALRAQTDKFTSGYTFIKSKTGAYLVG GWCFVFTFICATLGFLPQEVVFGTNGWTHQLIMNIISVIVLFGFGFIMPLLARRDVIKEK LL >gi|225002468|gb|ACIZ01000111.1| GENE 66 71452 - 71619 72 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTESPVSLATSVIETFFFTPTTTLFAELGKTFYLILQTKLTPHMEALSTKSNHFS >gi|225002468|gb|ACIZ01000111.1| GENE 67 71564 - 72583 817 339 aa, chain + ## HITS:1 COG:lin2102 KEGG:ns NR:ns ## COG: lin2102 COG1609 # Protein_GI_number: 16801168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 6 333 4 331 336 194 31.0 2e-49 MKKKVSITDVAKETGLSVTTVSQILNGKGARFSEKSRKRVLAAKEALGYEPDLFARGLVG KRGNSIGVVIPDMMNPFFASFVVSVEKAAIPRGLFPQIFSINGFHENVDYFIRQFLGGTQ RGLILAASEASQEIVQKVGKQLNLPMVFTDQATTLMTGDSIRIDERHAGFLVADHLLQLG HRRIAFVLPQRLTVNLKDRMAGYQQAFAQYGVQLDPGLIFPSAFNPEGGRQAVAQIVKTD ATAIIAINDDVASGVYRGLYEQHKRIPADYAVVGFDDVTQARFMTPGLTTLAQPIDQLGQ QAVELLVAQMSGEHNTRNTIELPVKLVKRGSTKITNHRG >gi|225002468|gb|ACIZ01000111.1| GENE 68 72617 - 73009 463 130 aa, chain + ## HITS:1 COG:SA0259 KEGG:ns NR:ns ## COG: SA0259 COG1869 # Protein_GI_number: 15925972 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Staphylococcus aureus N315 # 1 130 1 134 134 143 59.0 9e-35 MKKGTVINTQLSQVIADMGHFDLLGIGDAGMPVPADTWKIDLAVSRNLPSFMDVLKNVLT ELQIQKVYLAEEIKTQNPKQLEQIQQLIDVPIVFIPHDQMKKDLSKTKAFIRTGEMTPYA NILLESGVTF >gi|225002468|gb|ACIZ01000111.1| GENE 69 73174 - 74676 194 500 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 235 476 12 245 329 79 25 6e-14 MKIEMKEITKSFGANQVLKGVNFTIDSGEVHALMGENGAGKSTLMNILTGLYPANSGEIL VDGQPTTYSGPMEAEQHGISFIHQEMNNFLEMSVVDNMFLNKELRNRFGLMDSKAMRDQA DHYLSLLGAKLDVDQPIGSLSVGRQQMVEIAKSLMTDAKIIIMDEPTAALTETEISQLFT VVRRLKAKGVGFIYISHRMEEIFEIADKVTVMRDGRSITEYATKDVTMKQLVKDMVGREI EDFYPERTPTFGPVAMEVKHLTEKGVFQDVSFSVRQGEILGFSGLMGAGRTEIMRAIFGI DKYQSGEILLDGQPVKIRDPQAAIRHNLGFLTENRKDEGLILDDSLHDNIVLPSIDGFVK HGLVDDKATDDFVRLLMKRLTVKAMGPDVTAGSLSGGNQQKVVLAKWIGSGSKVLILDEP TRGVDVGAKREIYDLMNELTDRHVAIIMISSDLPEVLGMSDRIAVVYEGRLTGILDGQTA TQESIMTLATGGVEEHAGAI >gi|225002468|gb|ACIZ01000111.1| GENE 70 74660 - 75640 966 326 aa, chain + ## HITS:1 COG:BS_rbsC KEGG:ns NR:ns ## COG: BS_rbsC COG1172 # Protein_GI_number: 16080648 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Bacillus subtilis # 1 321 1 319 322 329 61.0 6e-90 MQAQSKTKAASKVDVKKIFSRLGPLLALVVLIILVTVMSPTFVSPANLLNLLRQVSINAV IAFGMTFVILTGGIDLSVGSILALSGAVTASMLTSGFAAPLALTVGLILGAVFGLLNGVL IAYGKAAPFIATLATMTIFRGATYVFTNGNPITGAKMNNSFLFQFMGRGYLFGIPFPIII MIVVYGVLFVLLHKTAFGRKTYALGGNETAARIAGVRTKVVTMLIYTISGLMAAIAGIIL TSRLSSAQPDAGTSYEMDAIAAVVLGGTSLAGGKGRIFGTLIGALIIGTLNNGMNLLGIS SFYQQIVKGIVILIAVLLDRRSGNNG >gi|225002468|gb|ACIZ01000111.1| GENE 71 75751 - 76710 1060 319 aa, chain + ## HITS:1 COG:BS_rbsB KEGG:ns NR:ns ## COG: BS_rbsB COG1879 # Protein_GI_number: 16080649 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus subtilis # 11 315 5 305 305 276 51.0 3e-74 MKHTFKRFLMVAVIAAAAIFTLTACGNTGLGSKSDGDAKVTKKAPKDLKVGVSLSTLSNP FFVSVRNGIQDLAKKNKTNVQVSDAQNDTAKQNNNIEDMIQKKVDILIINPVDSSAITPA VKDANDAGIPVITVDRSSDGGKVLTLVASNSKKGGEMAAKYMIEKLGKNAKIAELQGIPG ASATRERGKGFDGAAKGQLDIVSKQTAGFDRAKGLTVTENILQGNGDIVGIFSQNDEMAL GAVQAVKAAGKKITIVGFDGEADGIKAVKAGDMAATVAQKPEEMGRLALQAAYDHFDGKT IKKNIESPLSLVTTEDANK >gi|225002468|gb|ACIZ01000111.1| GENE 72 76808 - 77749 791 313 aa, chain + ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 1 301 1 301 304 262 50.0 7e-70 MPNHVVVIGSINVDAILHIQRLPQPGETIQMDAFSKAAGGKGANQAVAAARSGAKTSFIG RVGNDANAAFMRGELVKNQIDTQYVATTADTETGQAYILLQASGQNSIIIQHGANFELTP ADVQRATGLIQSADFVVAELETPVAATAEAFKIAKAADKVTILNPAPAQKDLPEALLKNV DLIAPNETESELITGIPVTDEASMRQSAAYYHQLGIRGVVITLGSKGSFISLNGQATLVP AFKVKAVDTTAAGDTFIGALVSNLQPDLGNIVDAATYASMASSFTVQKLGAFPSIPMGDE VRAGLAKVKMGPA >gi|225002468|gb|ACIZ01000111.1| GENE 73 77854 - 78114 126 86 aa, chain - ## HITS:1 COG:no KEGG:LC705_00369 NR:ns ## KEGG: LC705_00369 # Name: pheT # Def: transcriptional regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 86 15 100 100 126 100.0 2e-28 MDAFFAEMMQDSSYRKLAESEKAKLASAYAVLEARQNAGLSQQELANKSGVPKTTIARIE RGSNTSIETLTKIANALGKQVRVSIV Prediction of potential genes in microbial genomes Time: Wed May 25 20:22:02 2011 Seq name: gi|225002467|gb|ACIZ01000112.1| Lactobacillus rhamnosus LMS2-1 contig00145, whole genome shotgun sequence Length of sequence - 177630 bp Number of predicted genes - 180, with homology - 175 Number of transcription units - 86, operones - 39 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 163 - 849 184 ## LC705_00370 peptidase S54, rhomboid - Prom 885 - 944 2.7 - Term 884 - 945 2.6 2 2 Tu 1 . - CDS 986 - 1210 82 ## - Prom 1355 - 1414 8.0 3 3 Tu 1 . - CDS 1575 - 1772 192 ## LC705_00371 hypothetical protein - Prom 1809 - 1868 2.0 4 4 Tu 1 . - CDS 1890 - 2072 118 ## LC705_00372 hypothetical protein + Prom 2073 - 2132 1.9 5 5 Tu 1 . + CDS 2158 - 2325 98 ## + Term 2520 - 2558 7.0 + Prom 2651 - 2710 4.5 6 6 Tu 1 . + CDS 2881 - 3087 172 ## LGG_00379 hypothetical protein 7 7 Tu 1 . - CDS 3254 - 4069 464 ## LC705_00374 hypothetical protein - Prom 4125 - 4184 3.3 - Term 4147 - 4198 2.7 8 8 Tu 1 . - CDS 4218 - 6206 1890 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 6246 - 6305 3.9 9 9 Op 1 . - CDS 6353 - 6877 433 ## LC705_00376 hypothetical protein 10 9 Op 2 . - CDS 6867 - 7502 626 ## COG1131 ABC-type multidrug transport system, ATPase component 11 9 Op 3 . - CDS 7514 - 8155 418 ## LC705_00378 rhodopsin-like GPCR superfamily 12 9 Op 4 . - CDS 8233 - 8913 210 ## LC705_00379 membrane protein 13 9 Op 5 . - CDS 8903 - 9688 399 ## LC705_00380 membrane protein 14 10 Op 1 21/0.000 + CDS 10319 - 10849 366 ## COG0477 Permeases of the major facilitator superfamily 15 10 Op 2 18/0.000 + CDS 10944 - 11708 507 ## COG0477 Permeases of the major facilitator superfamily 16 10 Op 3 . + CDS 11684 - 12118 385 ## COG1846 Transcriptional regulators 17 10 Op 4 . + CDS 12115 - 12675 375 ## LC705_00384 hypothetical protein + Prom 12764 - 12823 3.1 18 10 Op 5 . + CDS 12858 - 13073 301 ## LC705_00385 hypothetical protein + Term 13219 - 13279 16.3 19 11 Op 1 . + CDS 13611 - 15707 1550 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 20 11 Op 2 . + CDS 15708 - 16019 247 ## LC705_00387 PTS system transporter subunit IIB 21 11 Op 3 . + CDS 16053 - 17339 1208 ## COG3037 Uncharacterized protein conserved in bacteria 22 11 Op 4 . + CDS 17356 - 17778 483 ## LC705_00389 hypothetical protein 23 11 Op 5 . + CDS 17800 - 18660 852 ## COG0191 Fructose/tagatose bisphosphate aldolase 24 11 Op 6 . + CDS 18679 - 19314 471 ## LC705_00391 kinase + Term 19352 - 19402 9.5 + Prom 19697 - 19756 7.7 25 12 Op 1 . + CDS 19791 - 20726 665 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 26 12 Op 2 . + CDS 20738 - 22144 1266 ## COG3069 C4-dicarboxylate transporter 27 12 Op 3 . + CDS 22160 - 22657 227 ## LC705_00394 GNAT family acetyltransferase protein 28 12 Op 4 . + CDS 22699 - 23439 442 ## COG2188 Transcriptional regulators + Term 23563 - 23632 14.1 + Prom 23472 - 23531 5.6 29 13 Op 1 . + CDS 23650 - 24447 808 ## COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes 30 13 Op 2 . + CDS 24507 - 25070 257 ## COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) 31 13 Op 3 2/0.083 + CDS 25104 - 26633 670 ## COG1070 Sugar (pentulose and hexulose) kinases 32 13 Op 4 3/0.083 + CDS 26667 - 27431 535 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 33 13 Op 5 . + CDS 27452 - 28450 700 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 34 13 Op 6 . + CDS 28483 - 29742 542 ## COG3775 Phosphotransferase system, galactitol-specific IIC component + Term 29794 - 29834 -0.5 + Prom 29900 - 29959 7.3 35 14 Op 1 . + CDS 30003 - 31871 715 ## COG3711 Transcriptional antiterminator 36 14 Op 2 1/0.292 + CDS 31861 - 32727 730 ## COG0191 Fructose/tagatose bisphosphate aldolase 37 14 Op 3 . + CDS 32767 - 34710 1101 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 34750 - 34820 14.3 - Term 34859 - 34905 7.2 38 15 Op 1 . - CDS 34996 - 36234 702 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 36272 - 36331 4.2 39 15 Op 2 . - CDS 36364 - 37320 254 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 37380 - 37439 6.2 + Prom 37342 - 37401 6.1 40 16 Op 1 2/0.083 + CDS 37456 - 38256 227 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 41 16 Op 2 9/0.000 + CDS 38291 - 38707 246 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 42 16 Op 3 13/0.000 + CDS 38707 - 39201 491 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 43 16 Op 4 13/0.000 + CDS 39215 - 40048 673 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 44 16 Op 5 . + CDS 40067 - 40915 614 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 45 16 Op 6 . + CDS 41104 - 42003 528 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 42056 - 42102 13.2 - Term 42044 - 42089 9.2 46 17 Op 1 . - CDS 42136 - 43620 498 ## COG0471 Di- and tricarboxylate transporters 47 17 Op 2 . - CDS 43622 - 44899 169 ## LC705_00414 FAD dependent oxidoreductase + Prom 44910 - 44969 5.7 48 18 Tu 1 . + CDS 45046 - 45939 396 ## COG0583 Transcriptional regulator + Prom 46046 - 46105 4.4 49 19 Op 1 2/0.083 + CDS 46219 - 47055 872 ## COG1912 Uncharacterized conserved protein 50 19 Op 2 3/0.083 + CDS 47138 - 47698 680 ## COG4720 Predicted membrane protein 51 19 Op 3 34/0.000 + CDS 47700 - 49400 269 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 52 19 Op 4 . + CDS 49397 - 50233 624 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters + Term 50280 - 50333 5.1 - Term 50257 - 50327 10.2 53 20 Op 1 4/0.042 - CDS 50358 - 51380 615 ## COG1609 Transcriptional regulators - Prom 51411 - 51470 4.3 54 20 Op 2 . - CDS 51474 - 52853 1047 ## COG0477 Permeases of the major facilitator superfamily 55 20 Op 3 7/0.000 - CDS 52872 - 53210 154 ## COG0366 Glycosidases 56 20 Op 4 . - CDS 53207 - 54547 854 ## COG0366 Glycosidases - Prom 54687 - 54746 4.8 + Prom 54724 - 54783 6.5 57 21 Tu 1 . + CDS 54979 - 56481 1120 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 56558 - 56602 7.0 - Term 56536 - 56597 14.1 58 22 Op 1 . - CDS 56647 - 57426 704 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 59 22 Op 2 . - CDS 57428 - 57688 164 ## gi|229553474|ref|ZP_04442199.1| conserved hypothetical protein 60 22 Op 3 . - CDS 57701 - 59086 1037 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 61 22 Op 4 . - CDS 59113 - 59442 384 ## LC705_00427 PTS system galactitol-specific transporter subunit IIB 62 22 Op 5 . - CDS 59455 - 59928 356 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Prom 59983 - 60042 3.6 + Prom 60096 - 60155 4.8 63 23 Op 1 10/0.000 + CDS 60184 - 60936 482 ## COG1349 Transcriptional regulators of sugar metabolism 64 23 Op 2 . + CDS 60942 - 61934 532 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) - Term 61959 - 62025 8.3 65 24 Tu 1 . - CDS 62081 - 62914 500 ## COG1737 Transcriptional regulators - Prom 63005 - 63064 6.9 + Prom 62915 - 62974 5.3 66 25 Op 1 2/0.083 + CDS 63041 - 63493 451 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 67 25 Op 2 . + CDS 63503 - 64807 712 ## COG3037 Uncharacterized protein conserved in bacteria 68 25 Op 3 . + CDS 64826 - 65113 403 ## LC705_00434 PTS system transporter subunit IIB 69 25 Op 4 . + CDS 65132 - 66211 640 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold 70 25 Op 5 1/0.292 + CDS 66221 - 67024 454 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 67102 - 67143 6.1 + Prom 67315 - 67374 7.0 71 26 Tu 1 2/0.083 + CDS 67554 - 68882 1331 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases + Term 68919 - 68962 1.2 72 27 Op 1 3/0.083 + CDS 69008 - 70891 1194 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 73 27 Op 2 . + CDS 70943 - 71755 538 ## COG1737 Transcriptional regulators 74 27 Op 3 . + CDS 71724 - 72227 406 ## LC705_00440 hypothetical protein 75 27 Op 4 3/0.083 + CDS 72273 - 72827 346 ## COG1264 Phosphotransferase system IIB components 76 27 Op 5 . + CDS 72906 - 73394 566 ## COG2190 Phosphotransferase system IIA components 77 27 Op 6 . + CDS 73471 - 74151 428 ## COG0637 Predicted phosphatase/phosphohexomutase + Prom 74227 - 74286 3.1 78 28 Op 1 7/0.000 + CDS 74347 - 75198 730 ## COG3711 Transcriptional antiterminator + Prom 75221 - 75280 7.5 79 28 Op 2 8/0.000 + CDS 75469 - 77331 1776 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Prom 77358 - 77417 2.0 80 28 Op 3 2/0.083 + CDS 77458 - 78942 1312 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 78956 - 79007 7.0 + Prom 79056 - 79115 4.8 81 29 Op 1 . + CDS 79224 - 80690 1018 ## COG3711 Transcriptional antiterminator 82 29 Op 2 . + CDS 80683 - 81153 346 ## LC705_00448 PTS system transporter subunit IIA 83 29 Op 3 . + CDS 81155 - 82096 876 ## COG0191 Fructose/tagatose bisphosphate aldolase 84 29 Op 4 8/0.000 + CDS 82125 - 82598 399 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 85 29 Op 5 7/0.000 + CDS 82595 - 82912 419 ## COG1445 Phosphotransferase system fructose-specific component IIB 86 29 Op 6 . + CDS 82927 - 84012 1060 ## COG1299 Phosphotransferase system, fructose-specific IIC component 87 29 Op 7 . + CDS 84037 - 85011 643 ## LC705_00453 hypothetical protein 88 29 Op 8 . + CDS 85018 - 85701 391 ## COG3822 ABC-type sugar transport system, auxiliary component + Term 85711 - 85749 4.1 + Prom 85708 - 85767 4.2 89 30 Tu 1 . + CDS 85798 - 87264 1092 ## COG1070 Sugar (pentulose and hexulose) kinases 90 31 Op 1 . - CDS 87546 - 89153 982 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 91 31 Op 2 5/0.000 - CDS 89150 - 89932 299 ## COG3394 Uncharacterized protein conserved in bacteria 92 31 Op 3 . - CDS 89913 - 91253 1029 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases - Prom 91326 - 91385 4.8 + Prom 91282 - 91341 6.6 93 32 Tu 1 . + CDS 91413 - 92168 360 ## COG1737 Transcriptional regulators + Term 92220 - 92277 5.6 94 33 Op 1 7/0.000 + CDS 92633 - 93076 315 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 95 33 Op 2 . + CDS 93149 - 94693 1254 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 94711 - 94746 2.4 96 34 Op 1 . + CDS 94758 - 95924 441 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 97 34 Op 2 . + CDS 95926 - 97635 1091 ## COG3711 Transcriptional antiterminator + Term 97683 - 97749 17.2 - Term 97681 - 97726 8.1 98 35 Tu 1 . - CDS 97769 - 98380 513 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation - Prom 98615 - 98674 2.6 + Prom 98572 - 98631 2.6 99 36 Op 1 . + CDS 98657 - 99118 393 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 100 36 Op 2 . + CDS 99124 - 99414 287 ## LC705_00466 PTS system lactose/cellobiose-specific transporter subunit IIB 101 36 Op 3 . + CDS 99439 - 100698 888 ## COG3037 Uncharacterized protein conserved in bacteria 102 36 Op 4 . + CDS 100737 - 101636 699 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 103 36 Op 5 . + CDS 101651 - 102286 412 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase + Term 102295 - 102329 2.5 104 37 Tu 1 . + CDS 102348 - 104417 1339 ## COG3711 Transcriptional antiterminator + Term 104518 - 104551 1.5 - Term 104169 - 104200 1.1 105 38 Tu 1 . - CDS 104435 - 104752 169 ## COG1733 Predicted transcriptional regulators - Prom 104808 - 104867 4.8 106 39 Tu 1 . + CDS 104891 - 105535 461 ## COG0778 Nitroreductase 107 40 Tu 1 . - CDS 105571 - 106308 255 ## LC705_00473 hypothetical protein - Prom 106328 - 106387 3.7 + Prom 106791 - 106850 4.0 108 41 Tu 1 . + CDS 107034 - 107579 384 ## LC705_00474 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein 109 42 Op 1 . + CDS 107696 - 107848 305 ## LGG_00485 hypothetical protein 110 42 Op 2 . + CDS 107860 - 108624 866 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) + Term 108645 - 108697 8.1 + Prom 108706 - 108765 5.3 111 43 Op 1 1/0.292 + CDS 108849 - 109352 621 ## COG1309 Transcriptional regulator 112 43 Op 2 36/0.000 + CDS 109357 - 110418 1137 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 113 43 Op 3 . + CDS 110423 - 111112 230 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Term 111188 - 111232 5.5 - Term 111244 - 111275 0.1 114 44 Tu 1 1/0.292 - CDS 111279 - 112649 1233 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 112700 - 112759 5.7 - Term 112832 - 112886 12.3 115 45 Op 1 . - CDS 112897 - 113715 779 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 113735 - 113794 3.0 - Term 113761 - 113800 -0.9 116 45 Op 2 . - CDS 113838 - 114110 280 ## LGG_00493 hypothetical protein - Prom 114234 - 114293 3.9 + Prom 114259 - 114318 6.4 117 46 Op 1 . + CDS 114349 - 115356 742 ## COG1609 Transcriptional regulators 118 46 Op 2 13/0.000 + CDS 115410 - 115901 463 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 119 46 Op 3 13/0.000 + CDS 115933 - 116739 918 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 120 46 Op 4 . + CDS 116732 - 117553 609 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 121 46 Op 5 . + CDS 117589 - 119838 1581 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 122 47 Op 1 . + CDS 119962 - 120378 414 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 123 47 Op 2 . + CDS 120368 - 122056 916 ## COG0366 Glycosidases + Term 122087 - 122134 7.5 124 48 Tu 1 . - CDS 122123 - 122887 359 ## COG1708 Predicted nucleotidyltransferases - Prom 122937 - 122996 2.2 125 49 Tu 1 . - CDS 123008 - 123136 114 ## - Prom 123193 - 123252 4.5 126 50 Tu 1 . - CDS 123297 - 124100 522 ## LC705_00491 hypothetical protein - Prom 124252 - 124311 3.3 + Prom 125026 - 125085 5.2 127 51 Tu 1 . + CDS 125181 - 125276 65 ## + Term 125284 - 125328 5.2 + Prom 125826 - 125885 1.7 128 52 Tu 1 . + CDS 125928 - 126785 693 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Prom 126818 - 126877 3.8 129 53 Tu 1 . + CDS 126996 - 128012 929 ## COG3049 Penicillin V acylase and related amidases + Term 128103 - 128160 2.6 - Term 128091 - 128148 14.0 130 54 Tu 1 . - CDS 128191 - 129156 859 ## LC705_00494 hypothetical protein - Prom 129193 - 129252 3.5 131 55 Op 1 . - CDS 129427 - 131121 1346 ## COG4716 Myosin-crossreactive antigen 132 55 Op 2 . - CDS 131133 - 131261 161 ## LGG_00504 hypothetical protein - Prom 131289 - 131348 5.5 133 56 Tu 1 1/0.292 - CDS 131350 - 131916 536 ## COG1309 Transcriptional regulator - Prom 131940 - 131999 3.7 - Term 131954 - 131996 6.2 134 57 Op 1 9/0.000 - CDS 132006 - 132374 475 ## COG3412 Uncharacterized protein conserved in bacteria 135 57 Op 2 10/0.000 - CDS 132523 - 133104 516 ## COG2376 Dihydroxyacetone kinase 136 57 Op 3 . - CDS 133091 - 134110 1197 ## COG2376 Dihydroxyacetone kinase - Prom 134183 - 134242 2.0 - Term 134241 - 134287 9.5 137 58 Tu 1 . - CDS 134303 - 134731 464 ## LC705_00501 redox protein, regulator of disulfide bond formation + Prom 135073 - 135132 7.8 138 59 Tu 1 . + CDS 135261 - 135950 181 ## LC705_00502 peptidase S54, rhomboid - Term 136295 - 136344 5.4 139 60 Op 1 . - CDS 136442 - 137050 404 ## LC705_00504 hypothetical protein 140 60 Op 2 . - CDS 137077 - 137256 133 ## LC705_00505 hypothetical protein - Prom 137446 - 137505 6.4 + Prom 137405 - 137464 4.8 141 61 Tu 1 . + CDS 137638 - 138372 194 ## LC705_00506 transcriptional regulator xre family 142 62 Tu 1 . - CDS 138615 - 140030 1088 ## LC705_00507 DNA polymerase III subunit alpha - Prom 140064 - 140123 6.5 143 63 Op 1 . - CDS 140254 - 140439 60 ## LC705_00508 hypothetical protein 144 63 Op 2 . - CDS 140467 - 140739 187 ## LC705_00509 hypothetical protein - Prom 140879 - 140938 4.3 + Prom 141051 - 141110 5.6 145 64 Tu 1 . + CDS 141301 - 141549 196 ## LC705_00510 hypothetical protein + Term 141560 - 141619 10.8 + Prom 141697 - 141756 3.9 146 65 Op 1 2/0.083 + CDS 141792 - 142085 199 ## COG0640 Predicted transcriptional regulators + Prom 142088 - 142147 2.0 147 65 Op 2 . + CDS 142167 - 143330 918 ## COG2814 Arabinose efflux permease + Term 143391 - 143425 -0.9 + Prom 143387 - 143446 6.9 148 66 Tu 1 . + CDS 143484 - 144059 370 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) + Prom 144117 - 144176 4.1 149 67 Op 1 8/0.000 + CDS 144202 - 144798 548 ## COG2452 Predicted site-specific integrase-resolvase 150 67 Op 2 . + CDS 144833 - 146014 436 ## COG0675 Transposase and inactivated derivatives 151 67 Op 3 . + CDS 146050 - 146265 87 ## gi|199598668|ref|ZP_03212083.1| hypothetical protein LRH_10972 152 67 Op 4 . + CDS 146246 - 146464 238 ## LC705_00516 hypothetical protein + Term 146537 - 146580 9.9 - Term 146524 - 146568 10.1 153 68 Tu 1 . - CDS 146593 - 147474 984 ## COG0191 Fructose/tagatose bisphosphate aldolase - Prom 147508 - 147567 5.8 + Prom 147837 - 147896 7.2 154 69 Tu 1 . + CDS 148063 - 149796 1527 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 149823 - 149875 10.2 - Term 149884 - 149933 0.8 155 70 Tu 1 . - CDS 150008 - 150295 246 ## LC705_00519 hypothetical protein - Prom 150402 - 150461 7.3 156 71 Op 1 . - CDS 150498 - 151511 757 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 157 71 Op 2 . - CDS 151554 - 152621 901 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily - Prom 152677 - 152736 3.2 + Prom 152609 - 152668 4.2 158 72 Op 1 . + CDS 152805 - 153539 565 ## PROTEIN SUPPORTED gi|239830964|ref|ZP_04679293.1| Ribosomal protein L11 methyltransferase + Prom 153552 - 153611 8.3 159 72 Op 2 . + CDS 153644 - 154396 612 ## COG2071 Predicted glutamine amidotransferases + Term 154436 - 154493 18.4 160 73 Op 1 . - CDS 154483 - 155358 405 ## LC705_00525 hypothetical protein 161 73 Op 2 . - CDS 155358 - 155954 463 ## LC705_00526 hypothetical protein 162 73 Op 3 . - CDS 156031 - 156180 90 ## - Prom 156323 - 156382 4.0 163 74 Tu 1 . + CDS 156261 - 157604 1179 ## COG0174 Glutamine synthetase 164 75 Op 1 . + CDS 157814 - 158956 1056 ## COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold 165 75 Op 2 . + CDS 159112 - 160347 1107 ## COG0531 Amino acid transporters + Term 160357 - 160422 9.3 - Term 160360 - 160397 5.2 166 76 Tu 1 . - CDS 160457 - 160882 359 ## COG0789 Predicted transcriptional regulators - Prom 160905 - 160964 2.5 + Prom 160904 - 160963 3.8 167 77 Tu 1 . + CDS 161060 - 161926 825 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 161963 - 161993 1.0 - Term 161922 - 161958 -1.0 168 78 Tu 1 . - CDS 162106 - 163128 855 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 163275 - 163334 5.6 + Prom 163134 - 163193 6.2 169 79 Tu 1 . + CDS 163232 - 163576 229 ## COG1733 Predicted transcriptional regulators + Term 163606 - 163653 9.3 - Term 163587 - 163647 10.0 170 80 Tu 1 . - CDS 163650 - 164402 683 ## COG0730 Predicted permeases - Prom 164424 - 164483 5.2 + Prom 164516 - 164575 4.7 171 81 Tu 1 . + CDS 164628 - 165767 780 ## LC705_00535 ABC transporter permease + Prom 165791 - 165850 4.5 172 82 Op 1 . + CDS 165893 - 166627 817 ## COG1131 ABC-type multidrug transport system, ATPase component 173 82 Op 2 . + CDS 166620 - 168236 1305 ## LC705_00537 ABC transporter ATPase + Term 168275 - 168313 9.3 + Prom 168305 - 168364 3.6 174 83 Op 1 40/0.000 + CDS 168443 - 169123 615 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 175 83 Op 2 3/0.083 + CDS 169111 - 170235 897 ## COG0642 Signal transduction histidine kinase + Prom 170240 - 170299 3.7 176 84 Op 1 . + CDS 170427 - 171326 761 ## COG1131 ABC-type multidrug transport system, ATPase component 177 84 Op 2 . + CDS 171339 - 172466 793 ## LC705_00541 hypothetical protein 178 84 Op 3 . + CDS 172426 - 173055 583 ## LC705_00542 hypothetical protein + Term 173131 - 173167 0.4 + Prom 173076 - 173135 4.6 179 85 Tu 1 . + CDS 173340 - 175874 2527 ## COG0308 Aminopeptidase N + Term 175918 - 175958 5.5 + Prom 175995 - 176054 2.9 180 86 Tu 1 . + CDS 176136 - 177584 1166 ## COG0531 Amino acid transporters Predicted protein(s) >gi|225002467|gb|ACIZ01000112.1| GENE 1 163 - 849 184 228 aa, chain - ## HITS:1 COG:no KEGG:LC705_00370 NR:ns ## KEGG: LC705_00370 # Name: not_defined # Def: peptidase S54, rhomboid # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 228 1 228 228 398 100.0 1e-109 MIQNLKRSNLLSIGLAAKGTSVICCILVSCYFLFSILTNTFMVPASNFVGNIPSVLRGEF SYIITGPLYHFEWNHLMWNLLPTVVLGPFIEWKIGSVALVIGFFTSGWIGALIFCFGFGG YIQSALGISIYICLFYGASISVYALFPMSVFAFLIKKPDFSLITKAILTVAFFTLILGIL PKQNATDAQKFVQIAHLSGFLAGIICVIMIFALRNWKKVFCSFFKQID >gi|225002467|gb|ACIZ01000112.1| GENE 2 986 - 1210 82 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNNVNMIKFESITTISDETLQTTIGGDHIPNSGGGALPIGRNIFTPADLPGPNGSPYYGS SNQYRNAGRHWARN >gi|225002467|gb|ACIZ01000112.1| GENE 3 1575 - 1772 192 65 aa, chain - ## HITS:1 COG:no KEGG:LC705_00371 NR:ns ## KEGG: LC705_00371 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 65 1 65 65 116 100.0 3e-25 MLEKLVNNVLQLDSNSLTKARSGNIIPYRGDLNQTLYEQTPIYGMTHKYKLPIVHPIKQN FLTSN >gi|225002467|gb|ACIZ01000112.1| GENE 4 1890 - 2072 118 60 aa, chain - ## HITS:1 COG:no KEGG:LC705_00372 NR:ns ## KEGG: LC705_00372 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 60 1 60 60 115 100.0 3e-25 MGNELLPRGTNVVAQSIKDPDLLKINVWVFNYRQGVQINYTQSDHCVQYLHTVFNEFNHY >gi|225002467|gb|ACIZ01000112.1| GENE 5 2158 - 2325 98 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWITKQQRKDAIDGLTFLYRVATRDPVDAQRRIERIILRNAIKPSRENLTFDSLG >gi|225002467|gb|ACIZ01000112.1| GENE 6 2881 - 3087 172 68 aa, chain + ## HITS:1 COG:no KEGG:LGG_00379 NR:ns ## KEGG: LGG_00379 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 68 1 68 68 111 98.0 7e-24 MKWLRLISIKRVLIFGVIAAIGCKVTELATHIDPNVASYIWVLGLFITYKVADDISIKVT AGKKGVKL >gi|225002467|gb|ACIZ01000112.1| GENE 7 3254 - 4069 464 271 aa, chain - ## HITS:1 COG:no KEGG:LC705_00374 NR:ns ## KEGG: LC705_00374 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 271 1 271 271 528 99.0 1e-148 MYQELVTLSLAKDPLHFTDNQCIWLLDHVGDPKSKIRDQLVYSLFARGFQTPGFRKDQRK LLADVATQRAQLFDGIDNPQSDKVFTRTFTALLGALFLDADAREPFLTTRQRNTWLNWAV NYLRLEQDWRGFIPEKGWAHAVAHGSDLVSAAIAHPKVTPAQIKQALAIIPNILSRQKTP FLDDEEERLATIIQTASRSSQVQLKQISSVLAETDQQRWADYDQNPSNLSAYYRLSAWKR ILTSLYFIAPPLRPEVLPSIESYFRKMGYAE >gi|225002467|gb|ACIZ01000112.1| GENE 8 4218 - 6206 1890 662 aa, chain - ## HITS:1 COG:lin0461 KEGG:ns NR:ns ## COG: lin0461 COG0768 # Protein_GI_number: 16799537 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 6 662 13 677 678 532 46.0 1e-151 MKKSTRTILISVVAAIVVIVGGFGAFRWYQGKAEGDQVKATAQAYTKAFANRQYEKAVKQ VDTSHLKGPGWQYTAKTLAERNQAVFDRIGASNIKITDLKTTNSKDGTYQLTFTANMNTK IGKLPAQHYTAPIVKVGDNWRIRWTPSLLFPQMDGKDTVQISLTAATRGKILDRNGQALA TNGNVTQAGLVPGKLGSGDERTANLAKIATAWDVKTSSLETLLKQSWVTDDTFVPVKIVT DSPALTGAAYQTIGSRTYPLGEAAAQLVGYVGTATADDLKKHPSLTANSKIGKAGLEQIY DHYLRGTDGGTIAIRNGSNSHPLLDTKAVAGKNLKLTIDATKQKTAYTQLAGKSGSVVTM DPTNGELLTLASSPSYDPNAFVNGISQTNYDKYANNTELPFLSRFTQRYASGSTFKMLTA AIALQNKTITPDTTKSISGLKWQKDSSWGDYKVTRTVDAGPENMTQALVNSDNIWFAQVA LKMGASAYLKGLEPLFKTQANLPLTMKKAQISNNGKLASETLLADTAYGQGQLLLSPIEQ AAMYSAIANDGTMQQPTLIQAAKGKRTSVLQSNAAKTVKTALTHVVSDQAGTAHDLAIDG HTIAAKTGTAELKQKQDTDGKENGFLVAMDADKNTYLTVALIEGTGSGDVVTAMKPFVAS LY >gi|225002467|gb|ACIZ01000112.1| GENE 9 6353 - 6877 433 174 aa, chain - ## HITS:1 COG:no KEGG:LC705_00376 NR:ns ## KEGG: LC705_00376 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 174 1 174 174 337 100.0 7e-92 MKVNPKFWMISGCLVVFLGIIGFLRYQQVNANPQQRGVIKEVLIKRGQLVHAENVDFRVS KVQVLKKKDQVIVPVTLAIKQTGPANYGHKKDNPNYIENMWLNIPYSMSSQTDTIFDNNK VRVKPAMHPSAVRQPLTLQFSATRTSYEHRNQKMRFSFLVPVENYLVKYSLLLE >gi|225002467|gb|ACIZ01000112.1| GENE 10 6867 - 7502 626 211 aa, chain - ## HITS:1 COG:BS_yybJ KEGG:ns NR:ns ## COG: BS_yybJ COG1131 # Protein_GI_number: 16081114 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus subtilis # 3 208 1 207 218 122 33.0 4e-28 MGLIELHQVAKTIKRRQLLHHVEASIERGSITTLEGINGSGKTLILKALLGLITVTGQVV VAGKTVSPQEAYPIKAGILIENPSLIDDFTAMKNLELLARLDPTIQPQQLDDLLTYFELT RFPTQKVRKFSLGMKQKLGIAEAFLGGYPLIVLDEPTNALDHDSIIKLIDLIQRFNANGS TFVIASHNHEFVEQVATHKLSVKEGTIQHES >gi|225002467|gb|ACIZ01000112.1| GENE 11 7514 - 8155 418 213 aa, chain - ## HITS:1 COG:no KEGG:LC705_00378 NR:ns ## KEGG: LC705_00378 # Name: not_defined # Def: rhodopsin-like GPCR superfamily # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 213 28 240 240 339 100.0 3e-92 MNAVVILLSMQTAGNPHATIFSLFFDGVSFRAAETHRVVLPVLWFAYFFVPLLILLNGLQ QLWHTRTIHLRGLQIPPRKFAEVNLMLIALITTIYEVGAIGIMAIAAAFNLHFGNWQGLA AVGGLFVTTWLGVFLLLLLQAIGNHFSPSLALIIPACLLIVNAYTAIRMNPLGYLMLTRI NATNAWHPILVLLGVSSLATMGYLAVERHASLN >gi|225002467|gb|ACIZ01000112.1| GENE 12 8233 - 8913 210 226 aa, chain - ## HITS:1 COG:no KEGG:LC705_00379 NR:ns ## KEGG: LC705_00379 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 226 1 226 226 345 100.0 1e-93 MYHNVIRQQNLLTPAFLKVYLVCGLITAIISLTGINLIGELTSSPEQIMVLIFPRYLIFS GLMPTYLLSLLPCIQPRVQDVLLYQSRKIITLQILYRVSISTLLMAGIWSLTNITVITVN GAAYLLETIWLYLLIHAVYLWLACFLLGLIAATIVLATKSKLMAFFVSFGICGLSFFLVI SHLPSLLFDFSARDSNPLLLAKGIIMLGLVCFMTALLTAIVNRRDL >gi|225002467|gb|ACIZ01000112.1| GENE 13 8903 - 9688 399 261 aa, chain - ## HITS:1 COG:no KEGG:LC705_00380 NR:ns ## KEGG: LC705_00380 # Name: not_defined # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 261 1 261 261 357 100.0 2e-97 MSFLWLRLPRKRLLLAMSVAFAISALQMIQVLGPIPPMDSPYTRWLSIDPFNFSPIIFFI LLPLIASIPAASLLKEDADSGLLAKVKLCFPVQKVIRSYVGLAFLTGFILVALVLALNLL FYFMMLPNIRPDNLLNSNILLTNQNTLFVSLYYANPLLHALISILFASFWGGLFAVFVMV TSLWIKHVFVALSTGLIVQIAILMLNSLLMLPDLVSFSPADFLHEMAPNTNISLPVTGLA TLTLLTYCLVFARIGVKRLVP >gi|225002467|gb|ACIZ01000112.1| GENE 14 10319 - 10849 366 176 aa, chain + ## HITS:1 COG:L184516 KEGG:ns NR:ns ## COG: L184516 COG0477 # Protein_GI_number: 15672362 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 163 1 165 467 126 44.0 2e-29 MFKRWLILMTLGLFFFMVIIDGTIVVVAVPTIAQALAVQPSRVNLLLTVYLTTISVCLLF FGQLADQVGRTRLFIHGTYWFLLGSAVAGLGVNLQLVLAARIVQAVGASMTMATSYAIVA DVFPPALLGRALGVESIFISLGALAGPGIGGLILSHLPWGFIFLGQFTDWLGVCGD >gi|225002467|gb|ACIZ01000112.1| GENE 15 10944 - 11708 507 254 aa, chain + ## HITS:1 COG:L184516 KEGG:ns NR:ns ## COG: L184516 COG0477 # Protein_GI_number: 15672362 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 10 203 227 418 467 98 30.0 1e-20 MILQINREPLVAGVLLALMVVGGLGFWQVERHAAHALLDVQLFRQSSFSRNLGASLLNYV GAYFFTLLAPIYLQVLLGLPVALAGMLLMLPPLVSLVANPLAGILSDRVDQGRSMRVGLG LLVLSNLTFALVPSGQRLWPFVLVAMTFAVGTALFTNPNSVMLIQSVDAKMRGQVGAATS LARQLGMSIGSAFSSLVFYQVLAMMTPARNLAKTAPAALLTAQRVSFLVAASLFLLAAIM LRKKDGKWTQNQMN >gi|225002467|gb|ACIZ01000112.1| GENE 16 11684 - 12118 385 144 aa, chain + ## HITS:1 COG:CAC3669 KEGG:ns NR:ns ## COG: CAC3669 COG1846 # Protein_GI_number: 15896901 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 1 111 1 111 153 58 29.0 3e-09 MDSEPDELISRVNILARQIQHDLDLRLAPTGLNASNYYFILKLGSVEDMRQDTLFKKIHL NASNVTRRLAQLIALGLVTKEKAMDDKRAWVISLTAEGRALVPRVSQIVAEYEAELTAKL AAADKVKFEQILDVLNKTKEDANR >gi|225002467|gb|ACIZ01000112.1| GENE 17 12115 - 12675 375 186 aa, chain + ## HITS:1 COG:no KEGG:LC705_00384 NR:ns ## KEGG: LC705_00384 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 186 1 186 186 365 100.0 1e-100 MKNVMAILGIPADYHVVQTTSRTRNGEPVTVERLQTSADITPNNAHITLVRNEAGTVISF NDSTFKAGGKLPAAERARHQASQLFQQLDSTYAANLTYMRTERQERHYFDHGERISTPVY WIKFAHRNGSYNWVTIGPDNRVIEVERESYWDYFRNRRATEMWNYDDWVLAYEGKGPQMA APNALA >gi|225002467|gb|ACIZ01000112.1| GENE 18 12858 - 13073 301 71 aa, chain + ## HITS:1 COG:no KEGG:LC705_00385 NR:ns ## KEGG: LC705_00385 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 71 1 71 71 95 100.0 6e-19 MAKPDFETLVARLGDLREAARRLADEDYISARYKGYSSEGLTLEEVLAKLETTEHEIAKL ERALEQLADEE >gi|225002467|gb|ACIZ01000112.1| GENE 19 13611 - 15707 1550 698 aa, chain + ## HITS:1 COG:lin2929 KEGG:ns NR:ns ## COG: lin2929 COG1762 # Protein_GI_number: 16801988 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 545 691 1 147 148 116 43.0 1e-25 MRERLTNLLRTLLDSSEIPLNELAVQFDVTIKTIRNEIQVLNDLLAEKQLPLFTIKRGVA YNHISKAQHQSLADLLDFNSVSQGALTPEQRNVYLLLDLLQATKPLYLVDEQAAMQVSKS TMDADLRRLRADLAKYNLALTTHPKLGAQLEGNERSIRTMFGDVLTRQHALATLVSQQLI ASGMYINKMKEVFTEKDVAYIHALLLKCFPNGALAANDMYSQQVTVLLIIWLHRVSNGHY LKDDEGEVDLNKATTKFLNALIQHYDLKLDVASEFAYVSFLISSFNRRGAIDLDDWVKAQ IFSVALIDHMETEIGFPFSKNEKLFEELYNHMTALFKRVSRHVKAVNPLKRTIQQGYAPI YHAVDRFFENTRYHLPMSDDEKAFLAMYFSATQAEERQRQDYKYQAAVVCNFGTATGRVL AAKLEERFNIDVLAVLSTSEISVLRKLPVTVVFKTVDMPIEKIPSLKVSPIPSEADLKHV ADFLNQHATLTKYEGRTFDPTRLFQSILDVLKQHQVTVNKGLLAALQAAFSENHVEINER EVQPMLKDLVNDQQIQLQQTADDWEDAIRVSAKPLLDEGDITEHYVQAMIDSVKQFGPYI VIGPSIALAHARPEDGTKKLAVTITTLATPINFGNPDNDPVKIIFCLAAIDNYSHLNVMK AIVQLINDQQKVDQLAKQTDLQTFKQILFNEKTSKETI >gi|225002467|gb|ACIZ01000112.1| GENE 20 15708 - 16019 247 103 aa, chain + ## HITS:1 COG:no KEGG:LC705_00387 NR:ns ## KEGG: LC705_00387 # Name: ulaB # Def: PTS system transporter subunit IIB # Organism: L.rhamnosus_Lc705 # Pathway: Ascorbate and aldarate metabolism [PATH:lrl00053]; Phosphotransferase system (PTS) [PATH:lrl02060] # 1 103 1 103 103 199 100.0 3e-50 MSKKLTIYFICGAGLGSSLACQMTAEDVLNRLGLEENLEHEAISSTPGLRADIIVSAENF APQFKQYDLDPAIKFVFLHNIVDPAEIEAKLVPVIKSLSEQSV >gi|225002467|gb|ACIZ01000112.1| GENE 21 16053 - 17339 1208 428 aa, chain + ## HITS:1 COG:YPO2782 KEGG:ns NR:ns ## COG: YPO2782 COG3037 # Protein_GI_number: 16122986 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 1 409 1 405 418 310 43.0 5e-84 MVVVNFIIQNILTQAAITIALIAMLGLLLQRKSFGAVLTGTFKTLLGFQVLSAGSAIIVT ALTYFGKIFQHGFHLKGVVPSIEAINGQAMNTLGLGNEIALTFLGIFIVNIIIARVSPWK YIFLTGQALLWMSTMTVVGGKMAGLNAVMTIIVGSVIGGIFAVAMPAIAQPFVRKITKGD AIALGHFCTVGYMVEAGAAWLFGERGEKKHSIEDIKLPKYMEFLQDTYLSVAVVMVPLFM ITAAFAGPKYAGNGTSLNYIMNAFMMGIQFVVGVYVLLAGVRLLLGEIVPAFRGIAMKLV PNAKPALDCPVLFPFSPNAVILGFITTTIGTVIGMFLMPVFGLAVILPGMLTNFFAGGTA GIFGNVVGGRRGAIIGGVIHGLFITLLPALLVTALTAFGFVNASATDSDTIVAMLMYAWI LTPILKAV >gi|225002467|gb|ACIZ01000112.1| GENE 22 17356 - 17778 483 140 aa, chain + ## HITS:1 COG:no KEGG:LC705_00389 NR:ns ## KEGG: LC705_00389 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 140 1 140 140 213 100.0 1e-54 MFGNLFKKKEPKQAISEAPKEASANASAIDEANLKEQAAALTHQIEQTAEDKEKRHLLYN QLGAVEAQLGHDLAAIAAYEESLKDKEEFGDAYNALLNLYETQRKAAAKAKNDDDIQKWV NKTDALLDMSKRVMRSGFGY >gi|225002467|gb|ACIZ01000112.1| GENE 23 17800 - 18660 852 286 aa, chain + ## HITS:1 COG:lin2701 KEGG:ns NR:ns ## COG: lin2701 COG0191 # Protein_GI_number: 16801762 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Listeria innocua # 4 275 5 278 284 184 38.0 1e-46 MYKNLKQLMDEAQALDYTVGAFNAHNLEMVPPMITAAKDAGSPIIIQTSVATAEYVGMKN FVAVCKSMAEDLLVDVDLHLDHAKSFDAIKEAIDAGYSSVMFDGSALPFKENMERARRVA DYAHEHGVSLECEIGTIGGTEEGVTVKEGRYTDPQQALEFLEHVDVEALAVGVGTHHGQF KSKTKLNWPLIEELHQVISKPMVIHGGTGVNEDDYHRLTENGFRKFNVGTELLVGWTRKA KKMFGQTEVNTSLRNNIVPCNDVVYDIVKHKISLFLNKEAAVPVKA >gi|225002467|gb|ACIZ01000112.1| GENE 24 18679 - 19314 471 211 aa, chain + ## HITS:1 COG:no KEGG:LC705_00391 NR:ns ## KEGG: LC705_00391 # Name: not_defined # Def: kinase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 211 1 211 211 401 100.0 1e-111 MTTEQQHVLVLLAGAPGTGKTYTAAKIMQAIHGFVSLPLDLFKEHLYDELGFDNLREKQM LDAEARARYYRGIDILMAEGKMILGDYPFSRLQKENIEQLATKHHYHVITVRLEAAINIL YERQRHRDLTDPRHLGHLMNHYHRGDTLDNISEQPDGMPSFETFAMRVKDRGYQDFQIGQ LIRVDVNDYTKIDYQKLLEKLKQALKVEVES >gi|225002467|gb|ACIZ01000112.1| GENE 25 19791 - 20726 665 311 aa, chain + ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 4 303 2 300 306 244 46.0 1e-64 MITSAPAPTIISTDPGIDDAVAIAIALGSPLMDVQLICPIAGNVSVEKTTLNTRLLLTFL NQSPRIVQGSRKPLLRPLKDASGVHGKTGMDGYPFPEPNVPVDTVTSAAVAMHETVMANS QPVTLIGIGPLTDIALFIHQYPDDLKKIKQLVLMGGALGRGNFGVLSEFNFGTDPEAAKI VFNSGLPIRVAPMEVGRQAKILPATSEKIKHLGKVGDMFYALFSKYRGGSFKTGLNMYDA LAMAMILAPTCFTEVQTHVAIETRGELTAGASLIDLKGYLGKEPNASVAVDVDSKRFESW FVEAIGKTANF >gi|225002467|gb|ACIZ01000112.1| GENE 26 20738 - 22144 1266 468 aa, chain + ## HITS:1 COG:dcuD KEGG:ns NR:ns ## COG: dcuD COG3069 # Protein_GI_number: 16131117 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Escherichia coli K12 # 1 468 1 454 455 193 30.0 6e-49 MNAILISVVGIIAVAILIYMLLKKNDIKMTLLGLGIVLMYIAILVGNKIKVSTPTGTALL DPFQAVVDQFSNTLVGPGFVILILGGYSAYMSHIGANQVTVHALTKPIAKIRSVYILIPI VFLIGNLLSLVIPSASNLAIILLATLYPVLRAAGMSRLSAAAVIGTSATIVPTPLGSDNV AIAAQLHMTVTDYVFKSHALVSIPTLLAIAIVHYLWQKHEDKRQPETLTYADELTQNSDG KAGEAVEDVTHHGFMAFIYGLLPLLPIVLLLVIFFLNLVIGTKLNMSVQMVTLISFVVAV FVELLAKRKAQAVLKETGTFFTGMGDVMSIVALLVAAQTFVQGLTSLGIINLIQNAMQNM SGSGIILPIIMVLFTAVIVLLSGSGTALVFAMIPLIIPLSKAAGIDPVALSIPMQLAGNL LRAVSPVAAVVLIVAGTTKLSPIQIVKRTSVPMIFGVVMMLVMSLILF >gi|225002467|gb|ACIZ01000112.1| GENE 27 22160 - 22657 227 165 aa, chain + ## HITS:1 COG:no KEGG:LC705_00394 NR:ns ## KEGG: LC705_00394 # Name: not_defined # Def: GNAT family acetyltransferase protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 165 1 165 165 327 100.0 8e-89 MIETRRISRKLATVKDLPHLERMLDHAKQQMCSEGITQWTETYPNHEDIYRDILKRQLWL FGDDVKAMAVIEENLNFWNIKRLVVDSAFSGKGIASLVIDEIKQLMVVHHVAEARLCTNH TNHRMIRLANHQGFLLHHYYHAQDRENFGAFIEFRYRRFSNADSC >gi|225002467|gb|ACIZ01000112.1| GENE 28 22699 - 23439 442 246 aa, chain + ## HITS:1 COG:SPy1870 KEGG:ns NR:ns ## COG: SPy1870 COG2188 # Protein_GI_number: 15675689 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 7 231 15 242 247 109 29.0 5e-24 MHRSPKYVQVYNQILKMIKQGQLAPGAKLPSEEVLTTEFEVSRVTLRTALSLLKEDGFIR SIHGQGHFVEASESQKKSGIEALGNPMLKSLVLPIESRETYFHENQASEFTDRLFDRQNA PYDTLNIWYQNKGENIGNTLAIVLPTTIQMFGVDLSDSAAIINFLEETIYQKASSSNVLI TLSDRQQKTFRRTFGDTSPLILMTEDIFGFNGERLLQNKHYIPANLYRANVMRYQNDLQN QIGAVE >gi|225002467|gb|ACIZ01000112.1| GENE 29 23650 - 24447 808 265 aa, chain + ## HITS:1 COG:MJ0400 KEGG:ns NR:ns ## COG: MJ0400 COG1830 # Protein_GI_number: 15668576 # Func_class: G Carbohydrate transport and metabolism # Function: DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes # Organism: Methanococcus jannaschii # 95 258 105 267 273 109 38.0 5e-24 MSKARRLAQIWGSDGNAIIAALDGFGFSMNTQGVDYTTEHLDKLIANGLDAALVTYGQAK TYEKELAKITTILRVDASINAYDSSVPVTDQFFDVKDALKLGAQGVVCMTFPGAGSREQF SHQMLAKLAKQSEDWGVPVIAETLPFGYPVTTKESNDPKYIAAAARLGAEFGADIIKTRL SGEDTDKEIIENASRPVLALGGPKTDTLTYFKFVKHCMESGAHGVAVGRNITQDKNPAGM VAGLNVLVHKGGTPEEALSVYNETK >gi|225002467|gb|ACIZ01000112.1| GENE 30 24507 - 25070 257 187 aa, chain + ## HITS:1 COG:TM1431 KEGG:ns NR:ns ## COG: TM1431 COG1954 # Protein_GI_number: 15644182 # Func_class: K Transcription # Function: Glycerol-3-phosphate responsive antiterminator (mRNA-binding) # Organism: Thermotoga maritima # 6 181 20 193 195 97 32.0 1e-20 MPKSIVIPSSLNGKYLREACEAKSEIVLLSGVNIGNLGSFVEYIHAHHKKAYIHIDITGG FRPDEVGIQLLKNMFHLDGVISTNMHALTRARAIKLETIYRLFLFDSRSLERAAGAMSDG QFSAIEILPSGYALSEYDKIRKYAGDTKLIAGGFIRSEKNISDIFAAGFWGVTTSDRQLW QYGVNRS >gi|225002467|gb|ACIZ01000112.1| GENE 31 25104 - 26633 670 509 aa, chain + ## HITS:1 COG:PM1247 KEGG:ns NR:ns ## COG: PM1247 COG1070 # Protein_GI_number: 15603112 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Pasteurella multocida # 5 500 3 480 483 336 36.0 6e-92 MSKKYLMGIDNGGTSTKAAIYDMDGHELEKTTVNTKMLTPHPFFTERDMNELWKANIYVI KQTLEKSHIDPRNISGIACTGHGNGLYLVDDKGNAVRNGIISTDDRAAAYVKKWLADPYY ENEIRPKTYQTVWSSQPVALLAWLQDNEPEVFERTKYIFMIPDLIRFWLTGDAHFEITNA SGTSMLNINTKKFDQDLFKFFGIERWMAKLPPLANSTDHCGSISRKIASETGLVEGTPCS GGVFDIAASALSTGLVHRHKLGIVTGTWSINEYITNKPKVVKDLFMTSIYPIADRWLITE ASPTSASNLEWFINTFMNKEKRAAEDAGFSIYEYCNKLVASTKPQDSDLLFFPFIFGGNA VPNASAGFVGATKYHDLKYFVRAVYEGVVFSHMYHIEKLRRIDGHLDGAARIAGGITNSQ VWLQIFANVLKQPLELVNVKENGTLGTAMTAGVMTGDFKSVEDAANHMVHISRTILPQPE FEDVYQKKYECYKKALTNMEPVWNGLQTV >gi|225002467|gb|ACIZ01000112.1| GENE 32 26667 - 27431 535 254 aa, chain + ## HITS:1 COG:lin1921 KEGG:ns NR:ns ## COG: lin1921 COG1028 # Protein_GI_number: 16800987 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Listeria innocua # 3 253 1 247 247 156 36.0 3e-38 MDLGIKGKNAIITGGATGLGQQFVLGLAKEGANVAFTYMSEKEKPEQTVEKVHAINPSLK AVPVLTNLADETQIVNFFDTALQRLGSVDIVVNNAGIWLSGKVVDIPAKDWDLTMKVNLR APFLLCQQFVRYALKTKRRGHIVNVTSQAAYYGSTTGHAHYAASKAGLIAFSISLAREVA KNGININNIAVGVMHTRMIQANLDKDPNYYVNRIPMGRVAEPSEIAELGIFLASEPASYM TGATVDVTGGMLMH >gi|225002467|gb|ACIZ01000112.1| GENE 33 27452 - 28450 700 332 aa, chain + ## HITS:1 COG:SMc01622 KEGG:ns NR:ns ## COG: SMc01622 COG0111 # Protein_GI_number: 15965987 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Sinorhizobium meliloti # 72 330 73 339 345 195 40.0 8e-50 MKAIAFGDNLIDVSMLKVGLTTLENAGIDVTIRDWSHESTAALQADNLKVEQHGPEAVNV DDSLLKDIDQFDLIITQFMPIGKKIIDRAKNLKYIGVLRGGIENVDAEYAKSKGIKVMNT AGRNARAVAEFTVGMILAETRNIARTHAAMEKDIWLKDFPNKDYIPELGGKTIGIAGFGH IGQLVGQFLKGFDANVIFYDKYVDEQKGFTKIDSLDELIKRSDVLTIHMRVTPETDHIIN AKRIAELKPTAYFINTARAELVDEDALLTALEQGKISGAAVDTFNNEPLPPDSRFLKLKN ITLTSHLAGSTADAFRNTPKLFAERFMASLQE >gi|225002467|gb|ACIZ01000112.1| GENE 34 28483 - 29742 542 419 aa, chain + ## HITS:1 COG:SA0238 KEGG:ns NR:ns ## COG: SA0238 COG3775 # Protein_GI_number: 15925950 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Staphylococcus aureus N315 # 4 419 8 418 419 293 39.0 6e-79 MQIIQAIVNLGAAVMMPIIFFVVGVVFRLSIGKSFKAGMLVGIGFTGVSMVINLLLTNLG PASKAMVARMGLHLTVVDTGWPTASTIGWGTPIMPIIVIGFLVINAVMLVLNLTKTVDID IFNYWIFLLLAAVVYAASHSFWVAALTTWIIFALTLIVADLTAPWIERQYKSLNLKGISF PHLTCLAWVPFGIATNWVIERIPGLKKIDMQPEKIQKRFGVFGEPLTLGFILGIAIALMA GYDISKTLTLAINVAAAMVLLPKMIDILVEGLTMVRDHVEKQLKKWFPKRSFYIGMDTAL LIGEPSVLATGLILIPIAIILAFILPGNKMLPFVDLASLMFLLALVTPFVKRNMFRMVIA GTLILICILYVGTSIAPEYTQSAISSKIPMGKGITSMSNIVGSATTWIGWVCVKIGSLF >gi|225002467|gb|ACIZ01000112.1| GENE 35 30003 - 31871 715 622 aa, chain + ## HITS:1 COG:lin0425_1 KEGG:ns NR:ns ## COG: lin0425_1 COG3711 # Protein_GI_number: 16799502 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 3 381 7 392 519 83 24.0 1e-15 MNEKIKQLLDILLQQKDYLTALQLSEMLGVTERSIRNYVRTLNSSETQGPLIISSNKGYR IQRDLYNESIENRLFAEDDAELLFRIAFILVSHVSFITFDDLAMQLNYSVESIRSKVQVL FSKIHDMNLNVALESRIFTGIRILGAENQKRLLLEQLIPIGKIVKGDLTDSTFKLLNGVC DKQTIEKEIVSIDTVFSQHHTTMDFIVYAKIICHMVIAISRYRENHPINSSEVKDSNKDH PEFQLASSLLARAPTAISNKAEIMALTNYLIAMPLNTPGSFVPNMNVLQRGQLESSLKRA ESYYGIPLYSNESYRNQIINHIMRLLDPIEESIPVFNPYSQKTKREYLFAYSIACFLYDE LQNDFDIQAPESEIAYLAIHIQLVLTEETKSTIRTELVFQGKKAEGELFRYKIQTYFPRI DIGVVTTAMDLADISKYQLIIRCGFQESDDQVNDKIIEISKALNTNDIARIQNFIETVGT MSLIQKLDYHHMNESSSMDAIAYLLKKSGYFNLFPYFKKRESMSSTDIGHLVAMPHPFLK GSETAAKVIVGINKTAISWGRQKVRLVVIYIPAADLKTNKNFFNDVYEHTNNLAEVHALL ETKTKREFIEVWNRKGDYSNAL >gi|225002467|gb|ACIZ01000112.1| GENE 36 31861 - 32727 730 288 aa, chain + ## HITS:1 COG:lin0378 KEGG:ns NR:ns ## COG: lin0378 COG0191 # Protein_GI_number: 16799455 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Listeria innocua # 1 288 1 286 286 309 53.0 4e-84 MLYNMVDLLSVAYKNNFAVGSYNVANSEFVEAIIHAAEAKNAPAIIQIHPNEINLVGDNF TAYVRQAVDRTRVPMAIHVDHGATLGDCVRGIHNGYTSVMIDASAKSWDDNVALTKQVVD VAHSVGVSVEAELGTIGSNELSTEGTGVNKILYTDPEDAKKFVSLTGVDTLAVAIGTRHG HYSHVEKPELRIDLLEKIHEAVDIPLVLHGGSDNKDEEIKKTYLHGVAKINLSTDMKTAF FSQLRKNLDENPGAYEPDQLMPSARKAAQEVVEYKMDLFNSTGKAELY >gi|225002467|gb|ACIZ01000112.1| GENE 37 32767 - 34710 1101 647 aa, chain + ## HITS:1 COG:BS_fruA_3 KEGG:ns NR:ns ## COG: BS_fruA_3 COG1299 # Protein_GI_number: 16078504 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Bacillus subtilis # 301 636 5 339 339 344 55.0 3e-94 MRIDELIDIKNIDTSIEPMTKDQVIDRMISKLSQNGYVQDADVFRKAIYQRENEISTAVG YGVAIPHARTRAVERSTIAVFRDLAGVQWGQEKVNLVFMIAAEESASDEHLKMLSKISTF LMDESFRARLITAADPNEIYQILVQEDAKKDTEANISNARESAGKYLIGISACMTGIAHT YMAAEALANEAKKRGMRAKIQTNGSTGVENRLTSKDIEEADAIVVAHDVKVDTTVFGGKP FLDVPVKRAIDQPGSVVDQALEKDTTSSKSTPTHKNLESALGKETKSEEELTGSGKFARA FYTHIMSGVSYMIPFVVVGGIFIAISFMFGIYASDPKSDQYNIWAAFFNEIGGNAAFKLY VPILGGFISWSIADKAGLAPGMIGGMMAVNGGSGFLGGMVAGFLAGYVTRFIVKKTQNVP HSYKGIMAVLVIPLIATFIVGLVMFFLLNTPMSNMIRFLTNWLKSMTGVNAFLMGALLAG MMASDMGGPINKTASAFGLAMFASKIYGPSAALMVGGMVPPLGIALATVLFKRKFTIQER EAGKANWVLGASFITEGAIPFAAADPLRVIPANIIGGAVGGAICMASSITLQAPHGGIFV IPIACNKPLLYIGCILIGTIITALILGFTKKNLSEQQMKQQMAAGII >gi|225002467|gb|ACIZ01000112.1| GENE 38 34996 - 36234 702 412 aa, chain - ## HITS:1 COG:Z5613 KEGG:ns NR:ns ## COG: Z5613 COG1063 # Protein_GI_number: 15804608 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli O157:H7 EDL933 # 1 406 5 406 413 478 56.0 1e-134 MESTALRIYGKKDLRIDTFDLPEMKDDEILATVVSDTMCMSSWKLAMEGEDHKKTPDDLA YNPAVLGHEFSGKILKVGKKWQSKFHAGQNYVIQPNLARQNTPFVPGYSYPYIGGDATKI IIPDEVMTMGCLIPFEGDAYYEGSLCEPVSCVIAAFRAQYHVNFHSYQPTTGIKEGGNML IMGGTGPMGLLAIDYALHGPKKPSTLVVTDVNQAKLDRAKKLYPSDWVDIKFVNVNNLSL DEQKEVLLDAVDGNGYDDAFLMISVAPLATLADSLLNPDGCLNQFAGPMKKDFSASVNFY NIHYNFTHFVGTSGGDADNEAEAAKLIAEKKLDVSKVITHVMGLNDAAETTMNQPEIGGG KKLVYSGKKFDRIELAKVDPTTDLGKILAKHDGLWSKEAEDWILTNEPDYDA >gi|225002467|gb|ACIZ01000112.1| GENE 39 36364 - 37320 254 318 aa, chain - ## HITS:1 COG:Z5619 KEGG:ns NR:ns ## COG: Z5619 COG2390 # Protein_GI_number: 15804614 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Escherichia coli O157:H7 EDL933 # 9 314 13 320 322 200 33.0 2e-51 MSNLPKRYDRATLVKISDLYYMHGLTQQEISNIAHIHRTEISRILKAARDEGVVSIAINP ETTAVSQLIDFFKQKYNLREAVIVPASENGGNELNALSVYASMFLSRIIKSGDVIGLSWG STLSSVISQFPTDKGLRDIKVVPLVGGPMGRIPSNYHVSYLTHRLANRLNGTAFVLDSPA FVRSKALRKELLANPNTQEILGLWNRVNIAIFGIGSSLITDSPDWQAFYENTNFKSYFSA DMVGDILSHPFDKDGKLARDIDSILVAFPFSALRKVPHSVGIAFGEEKVNAILAALRGGL LNTLITTEATAKAIKELS >gi|225002467|gb|ACIZ01000112.1| GENE 40 37456 - 38256 227 266 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 10 263 4 240 242 92 26 2e-17 MSDWLSLLGKTIIVTGGSSGIGEAIVKELLQNGANVVNGDLREGSIQDPRLTYVKTDVTN PEAVENLAKVATQINGEIWGVVNNAGINKPRVLVDPKDPHGKYELDVHTFDQIFNVNVKS VFLVSQAAVRRMVKQRHGVIVNMSSEAGLEGSVGQSVYSASKGAINGFTRSWAKELGKFN IRVVGVAPGIMEATGLRTPDYEEALAYTRGTTVEAIRAGYKSTSTTPMGRSGKLSEVADL VNYFVSNRASYITGVTTNVAGGKSRG >gi|225002467|gb|ACIZ01000112.1| GENE 41 38291 - 38707 246 138 aa, chain + ## HITS:1 COG:ECs5002 KEGG:ns NR:ns ## COG: ECs5002 COG2893 # Protein_GI_number: 15834256 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Escherichia coli O157:H7 # 4 136 5 134 135 72 32.0 3e-13 MEIILVGHAHTAKAFKEAVEMIYGEVPNFHPIDFTPKEGLQSLTNKIISAIDPKKASSTL IITDLFSGTPYNAAAELVLKKKAADVVAGMCLPMLLEVAVNANSMDVGQLVSHLMKSKEE FSTSLSEKLTANAKEDDF >gi|225002467|gb|ACIZ01000112.1| GENE 42 38707 - 39201 491 164 aa, chain + ## HITS:1 COG:ECs5001 KEGG:ns NR:ns ## COG: ECs5001 COG3444 # Protein_GI_number: 15834255 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli O157:H7 # 1 159 1 159 164 202 61.0 2e-52 MIITLARVDDRLIHGQVTTVWSKESNADRIIIVSSEVYKDDIRKTLLKQAAPPGMKVNIV DVPKAIAVYNNPKYSKDKVFYLFTNPSEVVDLVKGGIPLKKLNIGGMQFKQGKTQISKAV SLNAEDVAAFRELDRLGVKLDLRVVKTDPSTDILTKIDETFGKD >gi|225002467|gb|ACIZ01000112.1| GENE 43 39215 - 40048 673 277 aa, chain + ## HITS:1 COG:ECs5000 KEGG:ns NR:ns ## COG: ECs5000 COG3715 # Protein_GI_number: 15834254 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli O157:H7 # 1 245 1 245 265 313 72.0 3e-85 MAISTIQIILIFIWSSVVGMGSVLDEFQTHRPLIACSVMGLILGDPKTGIILGGTLELIA LGWMNIGAAQSPDSALASTISTILVIVGNQDIQKGIAIALPVAAAGQVLTVLARTVTVAF QHAADREAEKANFTAIIWLHFTALIVQALRVSIPTTIVAVFVSPEEIKSMLDALPQVITG GLTVAGGFIVVVGYAMILNMMSVKYLMPFFYLGFVLGGYLKLSLLAWGAVGLIFAIIYVQ LNPKFAQNHSNGSGSSGGAVASASDHPAELPEDELDD >gi|225002467|gb|ACIZ01000112.1| GENE 44 40067 - 40915 614 282 aa, chain + ## HITS:1 COG:Z5614 KEGG:ns NR:ns ## COG: Z5614 COG3716 # Protein_GI_number: 15804609 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli O157:H7 EDL933 # 12 281 3 273 274 368 72.0 1e-102 MADQPVQVNKLKTKITKGDMFKTFVFENFQQASFNFERIHALAFCVDMIPTIKRVYSKKE DQVAALKRHLVFFNTTPAMCGPIVGVTMALEEGRAAGEPIDDGTINSFKVGLMGPLAGVG DPIMWGTLRPILAALGASLALQGSWLGPILFFFAFNAVRLAFKWYGLQLGFSRGLALVKD MSGNLLQKITEGATVLGLFIMGVLVTKWTTINVPLVVSKTTVSGKTTVTTLQNILDQFCP GLLALGLTLLCMYLLRKKVSPILLIFVLFGVGIIGYWLGILK >gi|225002467|gb|ACIZ01000112.1| GENE 45 41104 - 42003 528 299 aa, chain + ## HITS:1 COG:lin0378 KEGG:ns NR:ns ## COG: lin0378 COG0191 # Protein_GI_number: 16799455 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Listeria innocua # 3 286 2 286 286 241 44.0 1e-63 MPLVSTKYLVTTAYQNKFAVGAFNVGNSEFVKNIIAVAEELESPVILEIHPLEYELMGSA IFKYIREAALTATIPVAIHLDHGRNMADVLRAIQDQANSVMIDSSGFSFEENLRLTKQVV EVAHRVGVSVEAELGSIGNRKFTEDQNMGRIYTDSESAKQFVEETGVDDLAVAIGTVHGP YPSGENDIRIDILKKLNATLKMPLVLHGGSDNPDSKIREAIQNGISKVNISTDIKVPFYH GIAKAVAENPNEYEPWIMTPGADDSQKKVIAEKIRLFGSDHKLSLYLESPEKLTPYINS >gi|225002467|gb|ACIZ01000112.1| GENE 46 42136 - 43620 498 494 aa, chain - ## HITS:1 COG:HI0608 KEGG:ns NR:ns ## COG: HI0608 COG0471 # Protein_GI_number: 16272550 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Haemophilus influenzae # 131 486 118 456 461 74 25.0 4e-13 MQTTAKAFSITEFLGKINSKKIMNVISFAFIFLFRFIPAPDGLSVDSMQMIGIFIGILLL WNFAGIGWTSLLCMTVIVIFQIMTQTEIFANGIGNWVNSFLYAFFMISYVMAETGLSKRI AIWSVSNKFASRGPWTFIVIFLFASVFLSAFMSQTAALLVFIPIAEELFKELGLKKGDRL PQMIILGLAMCVGIGSSMTPIGHAIVLIPLTFLARDTNINIDVVSYSIVGIITGLLVFIA FILIYKFFYRPDVNPLRNFDSNKLRRELPPMSKQEKITAFVFVSVIGIWIIQGTIGNFYP AFGAYMSSLGNAIPAFIGVILLCLISIDGKPIMDFKVASTQGVPWNTLIFNAAVLVLSTA LVQDKLGITKYFAKIVGPVVGDFSSFLFVLVAMFLLVLLKQFISSTIMATVFYSLLIPLA TALGNVNVAALTTLIAAGASYAWSTPPSTIPMALAGGSGWVDLKVMLRYGLALAVAGILI LAFVGYPVASLIFN >gi|225002467|gb|ACIZ01000112.1| GENE 47 43622 - 44899 169 425 aa, chain - ## HITS:1 COG:no KEGG:LC705_00414 NR:ns ## KEGG: LC705_00414 # Name: not_defined # Def: FAD dependent oxidoreductase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 425 1 425 425 820 100.0 0 MNSDLIVVGGGTAGVMAALAAASRGIKVTIIEQQSTCGGNATLSGLAEFNAVTFKKRLIY KGFEKKIFDRLVEWNSGKYYYQLPMSSDKSIRVDRLRYNPEVLKLILEDLLTENNVRIYY NTSFRSAQKLTNGFEIEAESFGKSVQLSTKYIIDGTSNSAVAVSLGCQTQPLASNKIPVS TQLFRLSNVDLTTLQEFIDSGHLSEIINDAFAKDIIKGRILAFAPIPGTNDVSVNVTRTS VDYRDALQLSRGLQESRKQISSIIVFIKENIPGCENSYISNIAPILGVRASIKLKGRTTL SLSDIQQARQFEDCVAVGCYPVDVHDPITKKVHFMKINSMYQIPFSACLPQEDLNLAVIG KAISTDDETFAATRVMPIVMNVGESVGAIFAYAINAHKNIYDFSPSKLQQVLNQTNLVSN FSEVN >gi|225002467|gb|ACIZ01000112.1| GENE 48 45046 - 45939 396 297 aa, chain + ## HITS:1 COG:lin2335 KEGG:ns NR:ns ## COG: lin2335 COG0583 # Protein_GI_number: 16801398 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 287 1 287 292 151 31.0 2e-36 MNLNQLNYFLVLARVGSYSEAAFQLDIAQSTLSQSMLNLEREFGTPLFYAEKRVTYLTGA GAVFQEEAKKILQDVAQSKEKVAQYLNGNIGNVTIGVSGSFGVNIVPKAIRRYRQFHPEN LVNFSIIQGNTEQILQGIRDHDVDFGICSYSRHNEDIEFSLIEREPYVVITSRWHELAER EQILISEILKYPLITFSTQSAVYYDIARMLNVDMTKLDIVMQVDDSSMMVSLVESGIGIA VIPRIYVLDNFDVKVLNLEDQRYRDIFCAYLKYQILSPVAKEFRSLIQLSSIRNSKG >gi|225002467|gb|ACIZ01000112.1| GENE 49 46219 - 47055 872 278 aa, chain + ## HITS:1 COG:SA2478 KEGG:ns NR:ns ## COG: SA2478 COG1912 # Protein_GI_number: 15928272 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 4 277 5 278 282 357 62.0 1e-98 MAKLVLQTDFGLVDGAVAAMYGVAYGVDDKLSIHDLTHEIPPYDIFAASYRLYQTTKYWP AGTVFVSVVDPGVGSDRRSIIAETADHHFVITPDNGTLTHLAKFVGLKRVSVIDEAAHAL PGSQESHTFHGRDIYAYNGAKLASGQITFEDLGTPLAADQIVMLPLGEVTQQEGQIAGTI DILDIRFGSLWTNIPLDAFKKLGVAPGELVQVSIYYHDQMRYQNQMPFTRTFAAVRVGEP LVYVNSLLNLGVAINQDSFSKLYHIGTGVDWHITVKRL >gi|225002467|gb|ACIZ01000112.1| GENE 50 47138 - 47698 680 186 aa, chain + ## HITS:1 COG:SA2477 KEGG:ns NR:ns ## COG: SA2477 COG4720 # Protein_GI_number: 15928271 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 7 185 6 184 184 194 54.0 6e-50 MRDHKVLSVRTVVAIGIGTAILFILKRFAVIPTGIANTNIDISYGFLGFIATLFGPIAGF FIGFLGHALNDFTQYGQPWWTWVFTTGLVGFVIGLFWRRFNVEAGNFGAKKIVAFNVLQV ITNVVSWSLIAPTLDIIIYSEPANKVYVQGIVSAISNSIATGVIGTILLVAYAATRTRSG SLKKES >gi|225002467|gb|ACIZ01000112.1| GENE 51 47700 - 49400 269 566 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 309 546 137 375 398 108 30 2e-22 MAAPAIQLDHVTFQYDSQAEPTLHDINLTIQPGEKVLIVGPSGSGKSTLGNLINGLIPHA FPGKLSGTVKVNGNVVQDQSLAALSLNVGTVLQDPDAQFVALTAGEDIAFALENSAVAPS EMHTRVKKWAERLKIGDLLAQAPQSLSGGQKQRVAMAGVLIDEGDILLFDEPLASLDPAT GEASVALIDELHQTYHVTEVIIEHRLEDVLRRPVDRVVVMADGRILADDTPEALLRGQLL QKIGLREPLYLEAAEFAGIDLKQATHLANLETFDAPNLGAKLADFTTEAPKTVADQPQTP LLTVAGLQFAYPKGRQIFTDLNLTLHHGEMVALVGRNGVGKSTLSHLIAGFLNPNAGQIT LDGEDLATWSVKERADKIGYILQDPNQMISKHLIFDEVALGPRLRGWDEDRVKSAVLSAL KVCGLYPFRSWPINALSYGQKKRVTIAAILVLEPALMILDEPTAGQDWRHFTDMMRFLTK LNDQGITMMLITHDMHLMLEYAQRTIVLGDGGVLMDATPAAVLTNPDVIQHASLAQPSLY RLAKRLNLDPLAFTQAVIDQERRVRQ >gi|225002467|gb|ACIZ01000112.1| GENE 52 49397 - 50233 624 278 aa, chain + ## HITS:1 COG:SP0484 KEGG:ns NR:ns ## COG: SP0484 COG0619 # Protein_GI_number: 15900399 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pneumoniae TIGR4 # 4 273 5 275 276 261 52.0 9e-70 MNSLFGYDPQDTWLHRLTGATKMLAFLGISVIVMASYDTRFVCAVMLASIILFLQAKIHW HQISLVIKIITIFAVVNLLLVYVFSPQYGVGLYGSKHVLIHAGYLTLTQEQLFYELNLAL KYIVTVPLALIFLITTNPSEFAASLNKLHVSYRISYSVALALRYIPDVQANFRQISLAQQ ARGYELSRKAKLFQRLKGMGQILMPLIFTSLDRIDQISQAMELRRFGTGKRRTWYMDQPL RTPDWLVLGGVVVITVVGLVLFRVNGGRFFNPFLGSNQ >gi|225002467|gb|ACIZ01000112.1| GENE 53 50358 - 51380 615 340 aa, chain - ## HITS:1 COG:BH3241 KEGG:ns NR:ns ## COG: BH3241 COG1609 # Protein_GI_number: 15615803 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 333 1 332 333 167 31.0 3e-41 MVATIKDIARKTGVAASTVSRVLGNKQSGYSQATAAKVRAAAKELGYKRNQAAVELVKQR SNVIATVVSSVKTSFSGQIIDGIQSEAIKHGLNLIIIYSNSADPVEQRRALMTAIERPVR GILLLSIALSAENLELLQESQIPFCFLSIGFNDQRFPFISSDDRQIGYQATQLLLAKGHR KIGLAAIDKYPYTGRLRLEGYREALKEAGITPKDDWVQLGDYSYTSGQAAMKAYGGKTKL TGIIAGSDEAAVGILNQARDFGLNIPDDLSIVSIDGTEICEMVQPQLTSVTQAFYKMGVE GVKRLEAPDAEKKIVSKQQIYTSISIVERESVRDIGHQDK >gi|225002467|gb|ACIZ01000112.1| GENE 54 51474 - 52853 1047 459 aa, chain - ## HITS:1 COG:NMB0388 KEGG:ns NR:ns ## COG: NMB0388 COG0477 # Protein_GI_number: 15676302 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis MC58 # 20 457 8 446 451 394 48.0 1e-109 MSKNTMNPSVDSKEKVETTTVDSSMPDLSMQTILAMTFGCIGVNMAFTLQGSQMSRITQT IGVNPNSLGFFFLLPPLLGMVVQPLLGKYSDKTWTRFGRRIPYLLFGAPIAAIVMVMLPF TGSFGFGYGSITALVYAAVAIALMDLFSNVCLAPYRMMAGDMVNNKQKNLAWSWQQIFSY AGGILAALLPYLLTMGGMSNTAAKGQVPNTVIWAYLIGAAILLLTTFVTVLKVKEYDPET YAKYHEIDLKKQHAKTPSLWQLTKTAPKSFWELAVVQLFSWIGIMYTWTYATGAMAKNIW NTTDPMSAGFQAAGNWYGVMTAFYSVAALLWGFVYAKTKPNQRKFWYSFGLFANAISIII TATTGNKWIALAAFALYGIGNFTINTLPFTLLTSSLNGQNEGSYLGLFNIAICLPQIFGS LLSFIIFPMMGNSQSMMMIVGFVSMVIGAISVVIVHEGK >gi|225002467|gb|ACIZ01000112.1| GENE 55 52872 - 53210 154 112 aa, chain - ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 110 441 556 561 89 42.0 1e-18 MNPNFKTINVQQALGDPNSVFYYYQKLIKLRHTLPVITDGTYALIPGNSDDEEIYAFTRT NADTTLVVILNYTNKNLTRHYDLPSHAKILISNYADDQGDNIRPYEAKVYQY >gi|225002467|gb|ACIZ01000112.1| GENE 56 53207 - 54547 854 446 aa, chain - ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 3 444 4 438 561 527 57.0 1e-149 MEKWWKNAVIYQIYPASFQDSNNDGVGDLRGITERLDYIKKLGVDVLWLSPIYKSPQVDN GYDISDYQAINPTFGTMKDFDELLAKAHSLGLKIMMDLVVNHTSNKHHWFQESRKGKDNP YRDYYIWRDGKDGTAPNNWGSFFTGSAWKYDAQSNQYYLHLFAPEQPDLNWENPTVRHSV YDMMNWWADKGVDGFRMDVINYISKPEGLPDGKKGKQELYANPEPLVANGHHVHEFLREM NQTVLSKHNLISVGETPSVTVDEAEKYASLDNKELNMVFQFEHMGLDGNSNPALGRWADR KASLKDLRANLTKWQLALAGKAWNSLYWNNHDQPRVVSRFGDDTTEENRVLSAKMLATML HMQQGTPYIYEGEEIGMTNAYFSKIEDYVDIDSLNSYHQIVEEQHLVDKTTMMNYIKMHS RDNARTPMQWSDHENAGFSKHSPWEK >gi|225002467|gb|ACIZ01000112.1| GENE 57 54979 - 56481 1120 500 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 7 500 15 506 506 568 64.0 1e-162 MGFIAFLSVILVGCSSQTSSKSSSSSSKTNKSTSSKVTSGASQQGYSDPKTMKSKYDIVI VGAGGAGMTAAIEAKQQGMNPVILEKMPIAGGNTLKASSGMNASQTKVEAAQGVKDSNDQ FYEETLKGGGGTNDKALLRYFVDNSAGAIDWLDSIGIKLDKLTISGGMSVKRTHRPHDGS AVGGYLVDGLVKEVKKENIPLFVNTDVTKLNETNGKITGVTAKVNQDKTKKIVAKAVIVT TGGFGASKQLIKKYRPDLAHYVTTNQAGATGDGIKMIEKVGGYAIDMKKIQIHPTVNQSK HILIGEATRGEGGILVNQSGKRFFNEMNTRDKVSAAINKQKGKYAWVVIDSGVRQRSSAI DFYIKDKLDVEGKTLNDLAKKMKVPATTLQKTVATWNDAVNNKKDSEFGRTTGMDHGLTT GPYYAFKIAPGIHYTMGGVKINTKTEVLTKKQQPIPGLYAAGEVAGGLHGNNRIGGNSVA DIVIFGRQAGTQATAFAKAQ >gi|225002467|gb|ACIZ01000112.1| GENE 58 56647 - 57426 704 259 aa, chain - ## HITS:1 COG:lin2198 KEGG:ns NR:ns ## COG: lin2198 COG0235 # Protein_GI_number: 16801263 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 11 225 1 201 216 191 45.0 1e-48 MTMFKAPKGRIMFEHEREDLAKVVKIVMERDDTNIAGGNISFKVSAEDTGKEYIIMTPTM MSEAYLGDLAPEQILVVEPHTRKIIAGEGNLTREINMHEAVYDANPDIKCVFHSHAKNAM FWATSGLNMPNITEATQKVGFIETLPFEPNCSEPLAELVSANIAKIGEKAIPHMYLLNSH GVLITTGGKDMDGLTALHSALAIVDTVEWNADIAFKQTLMQKLGLLDGYYSKGNKIGSLE DLEDGTPIYNRKAVAVNGD >gi|225002467|gb|ACIZ01000112.1| GENE 59 57428 - 57688 164 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229553474|ref|ZP_04442199.1| ## NR: gi|229553474|ref|ZP_04442199.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1] # 1 86 1 86 86 139 100.0 5e-32 MANKKIRIQRLTWTITSFITFGIFVFAITSKTYWLNIFVIILGLLIKEKGYRPLFSENEK KRAIIKRELIESHVIKSKSYLKKGSN >gi|225002467|gb|ACIZ01000112.1| GENE 60 57701 - 59086 1037 461 aa, chain - ## HITS:1 COG:lin2200 KEGG:ns NR:ns ## COG: lin2200 COG3775 # Protein_GI_number: 16801265 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Listeria innocua # 6 438 7 439 449 338 42.0 1e-92 MNWNEIVQAILSPGPQVVVSALIMILGFAFGMKASKAILSGLYLGVGFVGMTMAINALVA AVSPAAKALATNTGINLPTVDFGWTGAAAITWAWPLAFVFFAVEIGVNLIMLLTKTTNVI NADMWNIWGVALTGYMVYSTTNSYIWAFAAGAIQVIVMLKLGDMWSEEIHEMLGYPGVTT THIEAFTAVLMAPVNKLMDYIPVFNHRWDAKALKKKIGIISEPVVMGFIIGLVLALAGRY SIGKALNLAVTTGAIMAIFPVMAKFFMDSLTPFGTTMSNFMKKRFKNREFVIGLDWPILG QSTELWVTMVILIPVSILYAAVLPGNTILPFAGVINYCLGVGGLLLTGGNLLRMVVLGII YEPLFLYGGTFFANEFTALAKSTQAIAVPKGSTVSWSSIEAPDLRFLMAQGFKGSWLALL GLALLMALFWIVYRSFKKNPNPARKYVDKTNQPTATASTKG >gi|225002467|gb|ACIZ01000112.1| GENE 61 59113 - 59442 384 109 aa, chain - ## HITS:1 COG:no KEGG:LC705_00427 NR:ns ## KEGG: LC705_00427 # Name: pts # Def: PTS system galactitol-specific transporter subunit IIB # Organism: L.rhamnosus_Lc705 # Pathway: Galactose metabolism [PATH:lrl00052]; Phosphotransferase system (PTS) [PATH:lrl02060] # 1 109 1 109 109 196 100.0 2e-49 MKTILVCCGSGVATSPQVANKINEFLADHDLDNVAHAEPHPVETAKSRIDSNPDIIVYVG IAPADDDLRETIEANHVTEIVGVPWLTGMGEDEANAKVEEAVLAATQKS >gi|225002467|gb|ACIZ01000112.1| GENE 62 59455 - 59928 356 157 aa, chain - ## HITS:1 COG:lin2816 KEGG:ns NR:ns ## COG: lin2816 COG1762 # Protein_GI_number: 16801877 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 8 147 9 149 154 95 36.0 4e-20 MYEFMFDEGLIDIENKSSTEDELFESVASVAHSKGYVRSDYKQGLQLRENKFPTGLIFPK LKLALPHVDPEFVLKPFIYVVRTNSEIPWRQMGDMQQMTTRNFLFLGIKEPSQQVGLLAQ LMSAFKDSTFVSAFLKANTPEQMYSLLSDHFSKVSAH >gi|225002467|gb|ACIZ01000112.1| GENE 63 60184 - 60936 482 250 aa, chain + ## HITS:1 COG:SP1182 KEGG:ns NR:ns ## COG: SP1182 COG1349 # Protein_GI_number: 15901047 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Streptococcus pneumoniae TIGR4 # 1 246 1 251 253 139 36.0 7e-33 MMKKQRQSAILALLNATEGKTLTTTEIAKKMNVASMTIRRDLNDMAKEKLITRIYGGASL VNEKTTKEKTQVQRESKIEIGRIIGSLILPKMTVFLGAGTTIYASADFLPKTKDINYVTN SDLIFRYLVSKDINVLLTGGFYHRTTNEFVGTIAEQTLSNYLFDLAFISTNGIFENQVTT SNFDEGNIQKAAMKRSKKNYIVADHTKFGKGDSFSFAELKDFDGLITDSKASRQELKILQ TATKLLVGKG >gi|225002467|gb|ACIZ01000112.1| GENE 64 60942 - 61934 532 330 aa, chain + ## HITS:1 COG:SA1995 KEGG:ns NR:ns ## COG: SA1995 COG1105 # Protein_GI_number: 15927773 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Staphylococcus aureus N315 # 1 306 1 298 310 164 34.0 2e-40 MLLTITTNPSIDLVYKTGSFDLGTTNRELEHYQTIGGKGINAARVASILSEDKQAVAATG FLGRENANQIAHDLAQYNVKDEMIRVSGATRFCYTIIDNSGVKTELNELGQSISATKAEE LLGQVSRHHNLKGVSINGSLAKDLSDDFYIRLIEQIRINNPDAKIILDTSGAALDSVLSS SAPPDYIKPNNDELGELLGIVVPEEDDAVLHALQQPIFQNIPNILVSMGSQGGIAKLGVD VPQYFKLKISQQKAVNTEGSGDATVGGMLYAVAKGKQGLDVIRYGMAAGMANVLQSKTGF VEKNAFLRFVTSGEAVIAQPIQAIPILGEN >gi|225002467|gb|ACIZ01000112.1| GENE 65 62081 - 62914 500 277 aa, chain - ## HITS:1 COG:L54944 KEGG:ns NR:ns ## COG: L54944 COG1737 # Protein_GI_number: 15674168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 3 272 4 276 282 182 39.0 6e-46 MNTFDSRIAQVYSALGEASRQVADYFRHNYAKVANSSLRNLSDKIGVSTATISRFARQLG FASFDQLKLALLKEIDNTTNGDVETNDNSLASARKTVNANIAALEGTLSFLTQDQIDHSV NLLLDANKVALFGLGSSNVIAKAAYHTFLRLPLTLIADNDYHMQLMSANKLTEHDVAIVI SHTGNDTDILALVDLLSAHQVPIIAVTSYATSPLAKRVSDVFFSISEDTRYRSDALISMT SQLAIFDVLYTELVRRMGLQSEKTIALVHQAVAQKHQ >gi|225002467|gb|ACIZ01000112.1| GENE 66 63041 - 63493 451 150 aa, chain + ## HITS:1 COG:BH0220_2 KEGG:ns NR:ns ## COG: BH0220_2 COG1762 # Protein_GI_number: 15612783 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Bacillus halodurans # 11 146 9 144 145 107 38.0 5e-24 MADFKIDTSDIQINVHADSWQSALRLAAKPLLDNGSITATYVENMIQAVIKYGPYIVIAP GLALGHAEPDENVLKTGYAIATLDTPVKFGSKTNDPVDVVVVLASINSKDHLKLLQKLVN FLGSSTNMQALRQMQSSEDAARIVQAILEG >gi|225002467|gb|ACIZ01000112.1| GENE 67 63503 - 64807 712 434 aa, chain + ## HITS:1 COG:YPO2782 KEGG:ns NR:ns ## COG: YPO2782 COG3037 # Protein_GI_number: 16122986 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 1 415 1 407 418 225 34.0 2e-58 MKALNFIVFEILSNQTIFLGLIALLGLLLQRKKLPQVIDGVVKTVIGITVLGAGAGLLIN SLSPVVQELNKSLHVKGVLPTNDAVFGVVLKFDEIARNAVVIFLLAFFLHLLLVRLTPGK DFKNVYLTAHLMLYHAAFMAVTLPVVLHAKALGTIVVGTLLNALYYTYSPAITRRLARKW THDQITLGFMDQVGSILAHFIGKWVGNADPDQDADKLKLPKWASMFRDSTIVLFFLMPII FIGIGVAVGPAGITKLSGGSNWIIWLILQGFQFTAGIVILLSGVRMFIGSIVPAFKGISD KFLPGSVPALDAPTFFPYSPMGGMLGFLGSTIGAILVTILTIVLHAPIIVFPSPIIMYFD GNVMGVFGNKAGGWRGAIAAGFVTGMISSAAVILFYPLTGAVYGSGLTWSNIDYALVWTP VMYLLKAIRMLLGF >gi|225002467|gb|ACIZ01000112.1| GENE 68 64826 - 65113 403 95 aa, chain + ## HITS:1 COG:no KEGG:LC705_00434 NR:ns ## KEGG: LC705_00434 # Name: sgaB # Def: PTS system transporter subunit IIB # Organism: L.rhamnosus_Lc705 # Pathway: Ascorbate and aldarate metabolism [PATH:lrl00053]; Phosphotransferase system (PTS) [PATH:lrl02060] # 1 95 1 95 95 154 100.0 7e-37 MKIIAVCGFGVGSSVIAKMNIESILDEENKSSDATVETVDLGSVSGTDGDLYVTTNELFD QIPEDIQEKTIVLSNFVDKDAIKKSIDPKLENLGK >gi|225002467|gb|ACIZ01000112.1| GENE 69 65132 - 66211 640 359 aa, chain + ## HITS:1 COG:ECs5168 KEGG:ns NR:ns ## COG: ECs5168 COG2220 # Protein_GI_number: 15834422 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Escherichia coli O157:H7 # 7 359 5 356 356 387 51.0 1e-107 MTTKDKQLSNVTEDTWIKATFPEWGNWLNQSIDREKVLRGHMRLWWLGNMGIWLKNDEQT NIAIDLWAGTGKQTHDLPDNPPRHQWRRMLGAMQTQPNLRRTPQVFNPFSITTLDALLVT HYHHDHLDRNVAAAIVNNTALKTPLIGPQAVVNQWLAWGVPENRVKVVHPGDSFKVKDIK IEVLPSYDRTILITDPVGMSVPDDRQIPDMDERAVAYLLTTSAGTIYHAGDSHYSVNFAD VGIQHAIDIALLAFAENPVGVQDKMTSVDILRAAEALKAKLVVPLHWDVWTNTLGDPNEI LALYDYRKERFRYQFHPFIWQIGGEFDWPSDRELRVYHYPRGFDDRFKHPANLPYSSFL >gi|225002467|gb|ACIZ01000112.1| GENE 70 66221 - 67024 454 267 aa, chain + ## HITS:1 COG:VC1364 KEGG:ns NR:ns ## COG: VC1364 COG0561 # Protein_GI_number: 15641376 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Vibrio cholerae # 1 256 1 259 273 130 31.0 4e-30 MIHVIATDLDHTLLRENHALSKETAKVLSHLHDQGLKVILASGRPVPGLTDLNAQLGLMQ PEDYSIYLNGALVLNNRTGYEIYSRTLTAETLEAVGQFAQQEAIPVEYISADTVYSTTDF GRSSYSTFAPKGMKFSYVKQAEFFPRKPIYKIGFANEPLRIDALQATIKMLNVSVTRSRR EFLELMPLGVNKAVGLEKVVHQLGYNAQQVMAFGDEENDLEMLRYAGVSIAVANAQTKVK AVARYITDTNEVDGVAQFLKSWFSTSS >gi|225002467|gb|ACIZ01000112.1| GENE 71 67554 - 68882 1331 442 aa, chain + ## HITS:1 COG:CAC0533 KEGG:ns NR:ns ## COG: CAC0533 COG1486 # Protein_GI_number: 15893823 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Clostridium acetobutylicum # 4 441 2 440 441 635 68.0 0 MDDRKFSVLIAGGGSTYTPGIVLTLLDHIEKFPLRKLKFYDIDGHRQQRVADACKILVKE RAPEVEFLATTDPKEAFTDVDFVMAQIRVGKYAMRSLDEKIPLKHGVVGQETTGPGGIAY GLRSIPGVIGLVDYMEKYSPNAWMLNYSNPAAIVAEATRRLRPNSRIINICDMPIGIMDR MAQIVGLKDRNDLVFRYYGLNHFGWWTDVRDKTGKDLMPKLKEYVAKKGYWLGDEDKDTE ASWVSTFKKAADVYALDPTTLPNTYLKYYLYPQYVVEHSNPDYTRTDEVEAYREKNVFSE CDRIIGAGTAADTHFKSDDHATYIVDLCTAIAYDTKQRMLAIVPNDGAIENIDPEAMVEV PCLFGANGPERLAMGKAATFQKGLITEQNCVEKLVVDAFEEQSYTKLWEAMSLCKIVPDA SVAKTILDEMVIANKDYWPVLK >gi|225002467|gb|ACIZ01000112.1| GENE 72 69008 - 70891 1194 627 aa, chain + ## HITS:1 COG:BS_glvC_1 KEGG:ns NR:ns ## COG: BS_glvC_1 COG1263 # Protein_GI_number: 16077887 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus subtilis # 1 451 1 447 452 480 54.0 1e-135 MMQKLQRFGAAMFTPVLLFTFAGIMTAICILMTNEQIFGSMAAPGTNWYGVWQTLQAGAF TVFNIIPLLFVVGLPIGLAKQSPGRAAMEAVVIYASWNYMINAILTNWGPAFGFKNFAKM TIVANSTNQGLTNIIGIKTLDTSIVGALVVAGIVVWLHNRYFDTKLPDWLGTFQGSSYIV ILGLFIMIPLAVATCFLWPKVQMGISALQGFMKASGVFGIWVYAFLERVLIPTGLHHFIY IPFEYGPAAVSGGLKAWWFANLNTLGQSTRPIKELAPLMGFEGYGFEKVFGMLGIGLGLY ATAKPSKKKETAALLIPAVLTGMFAGITEPVEFTFLFAAPLLWFVHAFLAATMDAIMFAV GVVGEFSGGLIGWVSENWIPLWNHQWKTYLLQIAIGLVFVAIYYVAFKYLILKFNFVTPG REPEDQSAKLMTKKEYKAAKEAEKSAHSVASDPYTQRAIAYLSALGGPDNIKEMTSCATR LRVTVNDETKVAPDAEFKANKAVNVVHHGKALQVIVGLDVPQVLEKIQGLLTDQDTVQPA APSIAVDDTPESQTAALLSDSLGTQENVQSVKDQGSTLIVQVNDPNLVDSVDVFKSLGIG VKDVQVTDKTVTITFSEMADIARQIMA >gi|225002467|gb|ACIZ01000112.1| GENE 73 70943 - 71755 538 270 aa, chain + ## HITS:1 COG:BS_yfiA KEGG:ns NR:ns ## COG: BS_yfiA COG1737 # Protein_GI_number: 16077886 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 215 1 211 254 95 27.0 9e-20 MQLESLINQKYTSLNQSDKEILTFIVKNREFVRNSSLSEVAAKSLFSKSAIFRCCQKIGL TGFSQLRYVLAEEQESDQDSLSNVDYLAQTVKSMLWTVNQFKSTNVEGIYATLENAGTIY IYSTGWQQQIMAQQLQRDLYLIGKFAFLFPTGHDEMQLSSTKIKPGDVVIVISYKGMNAT IVQLVNNLKLNGVQIVSFTSFRQNRLAQAANYNLYYDVINKTIGADKKVERFFANLTLLI DIFSMGFANYLAAQEERTREHGEYNQRESK >gi|225002467|gb|ACIZ01000112.1| GENE 74 71724 - 72227 406 167 aa, chain + ## HITS:1 COG:no KEGG:LC705_00440 NR:ns ## KEGG: LC705_00440 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 167 3 169 169 256 100.0 2e-67 MVNTIRGKVSNYFQSLAQLLHLNLKRVFYTIILILALVPLAYVLFLMLNAAKEGLSITGV MKERPTIAILSIVAGLDVMCGYSLWMIREQVLADRRLYQMILIGVLITQLFVSNLLVAGA AVAGLMFSGQIQNTDAILPKSKVIVPMSLLTFGYVFCMAMMVAVMTR >gi|225002467|gb|ACIZ01000112.1| GENE 75 72273 - 72827 346 184 aa, chain + ## HITS:1 COG:BS_glvC_2 KEGG:ns NR:ns ## COG: BS_glvC_2 COG1264 # Protein_GI_number: 16077887 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIB components # Organism: Bacillus subtilis # 12 83 3 74 75 66 50.0 3e-11 MQPNYKDIADNYIQALGGADNIDSLVNCATRIRVIVKDPDKTASNRVFMHVGAVNFNLHG HFAQIIIGLDVAQVLEAMRKRLNLTDEGTLDEYGLTPNGERARILYECLGLPENILSVTV IGSAVAVQVVDPDWVDPYDVMLQLNIGIKSLTKHGHQVRIEMDQATAIARELNRLLRQNK RQIQ >gi|225002467|gb|ACIZ01000112.1| GENE 76 72906 - 73394 566 162 aa, chain + ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 13 141 3 131 151 135 55.0 4e-32 MFGLFKNKKKTGEEVVAPATGVLMPLDDVTDDVFSQKMMGDGFAVDPEDNEVVAPVAGTI STVFPTKHAIGITTPSGLDVLVHMGLDTVELEGKPFAVSVNLNDTVTAGQILATIDRDEI KASGYDDTIVVIYTNMDKLKNFPTVVQSHVVQGHQIGELVYS >gi|225002467|gb|ACIZ01000112.1| GENE 77 73471 - 74151 428 226 aa, chain + ## HITS:1 COG:all1058_2 KEGG:ns NR:ns ## COG: all1058_2 COG0637 # Protein_GI_number: 17228553 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Nostoc sp. PCC 7120 # 3 184 8 183 223 87 35.0 1e-17 MAGFIFDFNGTLFADADKQEISWRRFARDYANKELSDQEFDDHVHGQNAELTLNYLFDRQ LTRTEVNDYSERKEKIYRNLCQADTDRFHLLQGAPEFLDELRRANVPMTIATASAKKNVD FFFEAFGLSRWFDMKQVIYDDGTMKSKPDPDPFLRAALKLELRPEQTVIFEDSPSGFGAA KAAGAKCIVGVVTNHNRAVLEKDSRLTLVIDDYLEIPMSKIKQLIN >gi|225002467|gb|ACIZ01000112.1| GENE 78 74347 - 75198 730 283 aa, chain + ## HITS:1 COG:BS_licT KEGG:ns NR:ns ## COG: BS_licT COG3711 # Protein_GI_number: 16080959 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 273 1 273 277 226 43.0 5e-59 MEIYKILNNNVIVTKDEQGFEQVAMGKGIGFKRSAGETLDPSLVDKIFYLKNSDLQEHFS SLINEVPYAILSVSEKFIDEAASQLKQKLNASLHVSLVDHIYHALKRYEKGQLISNSLIF EIENLYPEEFELSEHFLQMIAEQEGVQLPVDEAGFIAMHLINAEMNEEMGTTVSIMKEVY AILNIIKYSMDVEYDERSLSYYRLLTHLKFFVQRVMKGSMLASDDAELYMLVSRKYPDAY RVANKITKYVANAFHVVLPAEEVLYLMIHLNRLKTRETELDRA >gi|225002467|gb|ACIZ01000112.1| GENE 79 75469 - 77331 1776 620 aa, chain + ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 103 459 3 359 368 388 56.0 1e-107 MDNQKLAKEILAGVGGESNVNSLVHCATRLRFKLKNRDIVNKDQVADIPGVVTVMESGGQ FQVVIGNTVSDVYQAFNGISHLVDDDQSAAPAATDEKETIFGKFVDLVSGLFTPLLGVMA GAGILKGLLSIALQLKWVVANTSTYTILNAIADSLFYFLPVLLAITAARKFKANTFVAVT IAGTLVYPSIITLANPGVHADLFGIPLVMVKYTSTVIPIILAVYVANKIEKFLNDHLHES IKNFITPMVVLVTVVPLTLMVFGPFGVYVGNALAAVLTAIFNFSPIIAGALMATAWQILV IFGLHWGIVPVMLNNLATLGKDPLKPGVAISVFAQAGATLGVMLKTKNKQFKALSASAAI SALFGITEPAIYGVTLRLKRPFIIAVSSAAIGGGIAGFAGSAGYAAGPSSILMIPAFYGK TGAGFVGFLIAMVVAFSTAAILTYLIGFEDVPVKADSLAANKEKPQVGEPTTTHIFSPLT GTIVPLAEIKDKAFASGALGKGVAILPTKGEVLSPVDGTITMAFATGHAIGLTANDGTEI LIHIGLDTVKLNGQYFTLKVEQDQKVKVGDPLVTFDLDAIKAAGYDITTPVIITSMAPHE DMIESTQTEIETGERLATLI >gi|225002467|gb|ACIZ01000112.1| GENE 80 77458 - 78942 1312 494 aa, chain + ## HITS:1 COG:lin0288 KEGG:ns NR:ns ## COG: lin0288 COG2723 # Protein_GI_number: 16799365 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Listeria innocua # 4 484 8 485 486 553 55.0 1e-157 MNVFPKDFLWGGALAACQAEGAYLQEGSGMAVSDISFFDPKLDREDLSKHRHVTTQNIEV AMADPGTTRYPKRHGIDFYHRYREDIALCAEMGFKVFRFSIKWSRVFPTGEEAEPNPEAL AFYDRVLTEIEHHGMTPLVTISHFEMPLALVNRYNGWADRRVIDLFYRYADSLFEHFGQR VPYWISFNEINAGRFSTFKSTGVVEDKSDNYLQACYQAVHHQFVAAAKITKRLHEVNPKA QMGCMIARFTTYAATSKPEDVLQMMHDDQYDNFFYTDVMVRGAYPGYMGRFFREHHVEIV WGDEDETLLKQYPADYLAFSYYVSNVSSAAPDDLDVTDSNLKQTLKNPYLESSAWGWQID PKGLRYTLNNLYDRYQIPLFIVENGLGAEDSVSEDGQIIDTYRIDYLQRHIEQMKEAIID GVDLIGYTTWSSLDVVSSGTSEMSKRYGFIYVDLDDEGQGTLKRIRKASFYWYRQVIASN GEDLAFREAAALKR >gi|225002467|gb|ACIZ01000112.1| GENE 81 79224 - 80690 1018 488 aa, chain + ## HITS:1 COG:lin2243 KEGG:ns NR:ns ## COG: lin2243 COG3711 # Protein_GI_number: 16801308 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 482 2 482 485 281 34.0 2e-75 MTTDLAQSVIHLLQDQQGFLTSNELARELKVSSKTIQRVVSRINTAYGNNIITSEKGRGY KLDYERFLLSKLSGKSSADHSLPAERQKKMLKRLLLAAPSELKVAQLAEDFYVSESVIQS DISSLESWLQRYDLSVKRINRTLHIQGEEKDIRDALMEAILGLSKDTTMNFQAMTQGLAE HDTTFALKQVDVVSQVLKADLPYPYDVNLFSHIYVLINRIRKFVKLPIEDEDITRLKAKV HNYPDLYSVSEIVKHNLENYLGEPVAENEVYYLFQYLISARFTGSDFKTKAGTSAYTFAE ALIDKVAKDIQLPDNTGAMVEELVPHVAPMLNRLENNIRLPNALLKEIQDEYPRVYQSVL LATASLAKAYHLPEISADEVGFLSLYIAKYMESSKRPKKALVICTTGLGSSELISAKIRK DLPDLEILDIISNLNLEKALARHPDVDILISTINLPKQKHIPQVLVSAMFTVQDKNKVEE ALRRRQDD >gi|225002467|gb|ACIZ01000112.1| GENE 82 80683 - 81153 346 156 aa, chain + ## HITS:1 COG:no KEGG:LC705_00448 NR:ns ## KEGG: LC705_00448 # Name: not_defined # Def: PTS system transporter subunit IIA # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 156 1 156 156 289 100.0 2e-77 MTSFKAIQLIPILDLPAEVSPTKLACLDAISTTLADVSGKDKGQIKTAFLEREAVGNTAL ESGVVIPHAVLVGRQAPFLGILCCPDGISDWQDLDSHAVRLVLAILLGRDGLTSQEGDAI KVLFEALASPQFLDTLAQASEPQAVMTTIKNKLEDN >gi|225002467|gb|ACIZ01000112.1| GENE 83 81155 - 82096 876 313 aa, chain + ## HITS:1 COG:lin2238 KEGG:ns NR:ns ## COG: lin2238 COG0191 # Protein_GI_number: 16801303 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Listeria innocua # 1 290 1 286 299 263 46.0 3e-70 MLVSGDRLLQVAKEHHFAIPAFNAGSGQLFTATLEKAEELQAPFIMAIHPTELEFLRDSF VAQVIDAANHTDLPIALHLDHGASYEQVIHAIHLGFTSVMIDASLTDYEQNVALTKKVVE AAHATGVSVEAELGTIADTGNDVEGHLTDNVKYTDPETAKEFVAATGIDSLAIAIGTAHG LYPKDVKPKLKPEIAKAVAEAVDIPLVLHGASDNPDDKIAQAIEYGINKINISSDIKIAF AKDLRTVLNENDPDEIREPKVLFPSPMIATQKVVAQKIKLFGDVDRTKLYYQHEPVNEIP YDIKNLQVEHFSA >gi|225002467|gb|ACIZ01000112.1| GENE 84 82125 - 82598 399 157 aa, chain + ## HITS:1 COG:SP1619 KEGG:ns NR:ns ## COG: SP1619 COG1762 # Protein_GI_number: 15901456 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Streptococcus pneumoniae TIGR4 # 3 149 2 148 149 135 48.0 4e-32 MEQLEEVLDPRLIRLNLQASSKRDAITQLSETLEAADYINDVPAFVKDIYLREEEGITGI GDGIAIPHGKSDYVTKVGVAIGILNKPIAWETLDGEGVNIVILFAVSNDTESARNQLKLL SLFAAQLGHDDVVKRLKHAATPDAVIAAFTQKEGSEQ >gi|225002467|gb|ACIZ01000112.1| GENE 85 82595 - 82912 419 105 aa, chain + ## HITS:1 COG:SP1618 KEGG:ns NR:ns ## COG: SP1618 COG1445 # Protein_GI_number: 15901455 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 100 6 105 108 112 65.0 2e-25 MKIVGISACAAGIAHTYIAKEKILQAAKDAGDTAYVETQGTIGTEDALTSEQISQADIVL LAIDVKIAGRERFAGKKVVEVPTDVAIKSPKKLIAKLHELSGQPS >gi|225002467|gb|ACIZ01000112.1| GENE 86 82927 - 84012 1060 361 aa, chain + ## HITS:1 COG:SP1617 KEGG:ns NR:ns ## COG: SP1617 COG1299 # Protein_GI_number: 15901454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Streptococcus pneumoniae TIGR4 # 1 353 2 356 361 308 54.0 9e-84 MKKIQIKQPALTAISYLIPVVVAGGFLLAIGNIMGGKNLEAVKGIANVWDAFSTMGGLIL GMLPVVVSTGVAFAIADKPGIAPGFLVGLISRIIGAGFLGGLIGGHIAGWSALLIIAYVK VPKWAAGLMPTLIIPFLASVIAGFFMFYILGGPIAAGTVWLTGYMKTLDTSQKFLYGLII GILASIDYGGAINKTVFAFVLALQAEGINEPITVLILASMVTPMGYTLAYFLGKAVHKNI YTPLEVETLKTAFPMGLVEITEGSLPIVLNDLWRSVVATGAGGAIGGGFSMLWGADSKIP ASGLFAVPTMSRPWAFIIALIIGSVVTAVVYLVLKKPVSAEDLATEKEEEDLNLKDLKIS D >gi|225002467|gb|ACIZ01000112.1| GENE 87 84037 - 85011 643 324 aa, chain + ## HITS:1 COG:no KEGG:LC705_00453 NR:ns ## KEGG: LC705_00453 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 324 1 324 324 651 100.0 0 MESSLFVGNPLQTSGAQTIQFLEGKAAGLKMIRMYNEAGLSMLVAPDRGMDIPELKVHGT NISFVSVTGFVNSTYFVEQGATGFMRNFNVGFLTTGGLSYMGAPKDPARGLHGTIGNTPA ENFYHQDNGQAIVAQGDVREAEMFGVNLLLKRRITLPKAQTSIYLHDIVVNEGSRPAPLM MLYHMNFGYPFFGPETQLVLDPLVTTDRDGLPATDWKTFSLPKAKTEERVYFHSFKPDFD DMVQYKLLSPETGLQATISVQSSLLSVLNEWKLMQTKNYVLGLEPATNNVNGIEAAERAG TLKKLAPDEQATFDLRVDFSRMEV >gi|225002467|gb|ACIZ01000112.1| GENE 88 85018 - 85701 391 227 aa, chain + ## HITS:1 COG:ECs5070 KEGG:ns NR:ns ## COG: ECs5070 COG3822 # Protein_GI_number: 15834324 # Func_class: R General function prediction only # Function: ABC-type sugar transport system, auxiliary component # Organism: Escherichia coli O157:H7 # 1 227 1 226 227 179 43.0 3e-45 MKRSRINQILKESERFLRQRQVVLPPFGQWQPADWGDLDTSYAEIKDNMLGWDVTDFGTG DFDKYGLVAFTFRNGNYAEPEKYPKPYCEKVLLLNEGQELPYHFHRLKEEDTINRGGGNL QITVWHSTEDEGLDRTTPVELVKDGHKLVLDPGTVVTLHPGESLTTTTGIYHKWEVEPGT GEVLVWEVSSTNDDNIDNRFLRDTPRVPEIEEDEEPYRLLFGDYRKL >gi|225002467|gb|ACIZ01000112.1| GENE 89 85798 - 87264 1092 488 aa, chain + ## HITS:1 COG:BH2756 KEGG:ns NR:ns ## COG: BH2756 COG1070 # Protein_GI_number: 15615319 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus halodurans # 6 486 4 485 498 432 46.0 1e-121 MANDVVLGIDLGTSAVKILALCKDGRLYTHSEPLQLIHPQNGYNEQDPEDWVLQTYKAIR IIVQENSISPEAIRAVSFSGQMHGLVALGAEHQALRNAILWNDTRAAEEVNEIHSDLGEA YIKVTGNRAVEGYVLPKFLWLQRHEPDVWNQIRAIILPKDFLRLRMTGKLGTDYSDATGT GYFDIQKGTWSQEILTHFGIPLEWMPPVISSGTIVGALGVEAAMATGLSTDTMVTMGGAD NAMGAIGAGVLHPDQMMSSIGTSGVILHPEDHLPQNYGGQLQLERHAIQSRYYSMGVTLA AGNSLSWFRDTFAKDKTFEDLIDVARRSTIGANGVRFAPYLSGERTPYFDPHIRGAFTDI SNANTFDDFARAVLEGIVFSLNDVINLYSKFGILPKEVIAIGGGAKNAFWAQMQADIFKV PIKIPKVDEGPGFGAAMIASVAAGWFRNVEEAIKTLVFYPYVYVPVENQSSRYEIVYESY HQLYARLK >gi|225002467|gb|ACIZ01000112.1| GENE 90 87546 - 89153 982 535 aa, chain - ## HITS:1 COG:CAC3425_1 KEGG:ns NR:ns ## COG: CAC3425_1 COG1263 # Protein_GI_number: 15896666 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Clostridium acetobutylicum # 1 412 1 413 440 345 44.0 1e-94 MKDKLQKITQTFARSIIQPVMFMAVTGLLISVAAVMKLEQLPEGIKNVGTGLFTILTSAA INQLSVIFCVGIAAAIAKKKKTDAAILGITVFLIFIYANNFWLSQTGQLAKAGKQGLFGT GQNIVLGVQVTDMGVFLGIILGCLVGFFVNKLGDVKFHKYLSPYEGTKFAYVVLIFLTII FAIAVSYIWPPINGAVNAIVGGLSGMGAFGFFLYGFLNRMLLPVGMHHLLWMPLYYTPLG GTAQVAGKTYNGAMNIWLAEIGNMSSVTSIHSSVGYLVNFGYIALPIGIAFALIHTAKPE NRVKLRAILIPAVFASAFAGITEPIEFLFLFISPILWLAHGIIYGFGLFISNVLGLNVMV ENIINTIMYSIAVPFGLGRQWLLIPIGLGLALLEYFVFKALIIKLNIPTLGRNGENELIP DELTKKTAKGAVQEKRSPAAPKPASDLAVIVKGLGGINNIENVNNCFTRLRIDVKDADKV DIATLKTYPSSGVVDKHKHIQIIIGLGVQDVREKLDDYLKENGWNLEPSDAAVQD >gi|225002467|gb|ACIZ01000112.1| GENE 91 89150 - 89932 299 260 aa, chain - ## HITS:1 COG:BH0913 KEGG:ns NR:ns ## COG: BH0913 COG3394 # Protein_GI_number: 15613476 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 4 231 3 230 237 160 39.0 2e-39 MRLLIINADDFGYGSGITLGILDAHKKGVLTSTTIMAGMPGFERAVRLAIQTPSLGIGVH LTLTCGKPLLQDVPSLTTSNGEFKRLSFYEDHFEINQNELYREWKAQIDRVIASGITPDH LDSHHHVHTLNGVTEVFEQLATDYELPVRGNYNVSPGIVTIKRFNDALDQIGVCKPIWQP MPLHNLIEDVKTFGSVEAMCHPGYVDADLTEHSSFTTGRTYTLRELIKPELKARLAAEGV KLGTYRDLVTQDQPLEEEPV >gi|225002467|gb|ACIZ01000112.1| GENE 92 89913 - 91253 1029 446 aa, chain - ## HITS:1 COG:lin2454 KEGG:ns NR:ns ## COG: lin2454 COG1486 # Protein_GI_number: 16801516 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Listeria innocua # 2 436 3 435 435 545 60.0 1e-154 MKNIITIAGSGSGYTPGILLTALSYKDEFPIKEIRLYDIDEERNEQMRIIMDYLLHRENV DVELIATSDPQVAFYGCNFVFSQIRAGGMKMREMDEKIPLKLGLVGQETCGLGGFAYGMR SMKSFVELVGFIQEYAPDAWILNYTNPESIIAETVRRRFPKAKIINACDMTIGIEELLEN SFGYDRQNFISTYYGLNHFGWYREIYDVQRGKDIMPEIIEKIITQGFKTSDLDPSWAKTY QLMAEMQQDFPQYLPNNYLEYYLYPNKIVEEANPDYTRANEIMDGRLKQITDTVSKIKEK RDLETINYQSGVHGQYIVRMAISILHSRNDRFMLIVPNRGAIPNVREDAVVEVPCYVNAK GVEPISLRDPIPDFHKGLMEAQVAAEKLLVDAFFEHSYQKAFQAFTLNQTVPNATVAKQA LDEMIKANGDQWVELKGGPTYASVNY >gi|225002467|gb|ACIZ01000112.1| GENE 93 91413 - 92168 360 251 aa, chain + ## HITS:1 COG:SA2115 KEGG:ns NR:ns ## COG: SA2115 COG1737 # Protein_GI_number: 15927904 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 39 221 37 217 254 63 28.0 3e-10 MLRLFSSRIQQAKVTLTHNETELLRSLSAQAGVIPRATITELAQSVFSSPSTIHRLIRKL GFKGYTDFKVRVEDSLESELPLVLAQPNLLKITISSIEHTFRLNQGVIRDAARLFLAAER HYVYGTGWRQKQAVDNFSTDLLVYGESSITLRNKYDLGNAVKQMNEHSVLLFTSLSGNTD EYAATLQQAKLQKVSIISVTRDVSNPLSEISDVAIYFADDTNLQDNRHWPAITMSFSLEM LINEILNFQHE >gi|225002467|gb|ACIZ01000112.1| GENE 94 92633 - 93076 315 147 aa, chain + ## HITS:1 COG:ECs4826 KEGG:ns NR:ns ## COG: ECs4826 COG1762 # Protein_GI_number: 15834080 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli O157:H7 # 1 147 1 147 148 95 31.0 2e-20 MPMFTKDNMIMELHGDNQKEILEALAAKAYQLGAVKDAETLVADYLAREEESTTGFGNGV AIPHSKSDNNLKATIIFGRSKQAIEWQSLDGQPANTFISLIVPASEAGVHLQLLAKLSRQ LVHPDFVDVLKKGSQDEVFDVIQKAIN >gi|225002467|gb|ACIZ01000112.1| GENE 95 93149 - 94693 1254 514 aa, chain + ## HITS:1 COG:frvB_2 KEGG:ns NR:ns ## COG: frvB_2 COG1299 # Protein_GI_number: 16131739 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Escherichia coli K12 # 126 471 1 345 355 417 64.0 1e-116 MAKLKIVGVTNCPAGIAHTYMVAEAIEQKAKALGYEVHVETQGANGIENKLTPAEIAAAD YVILALGKGMSDEDKARFNGKQVIELPVSEALKKINVIFDNLHDEAHLYTASKVQLGDRK QTTGIMSHLMAGVSAALPFVIGGGLLMALGSLMVQFGAPNVAPKAGQMASLAWVLNTVGG LGFTMMIPIMGAYIAYSIGDKPALAPAFLVTYLANTPDILGTQGGAGFLGAIVIGLSVGY FVKAFRKVKLGKTFQSTLGFLIIPFVTLLLFGLVTYYLLGPGMAWLMAALLSFLRSIPPE MKIAGGFLVGAMLAFDMGGPINKTAWFFGFSLLSSHVYTWYGIAGVVTVLPPMAAAIATW LRPGLFTKQERESSWPSMLVGMTVATEPAIPYALAAPVPMITANTLAGGIAGAVSMGLGV ERLAPGLGVFDPLIGLSRPAWAYYIALAVGLILNVLFVIVFKSAWLKRQERKNGLVSLDD QPQSTVIAGDTNVSKPAAKGVQATKTLSPDAAKK >gi|225002467|gb|ACIZ01000112.1| GENE 96 94758 - 95924 441 388 aa, chain + ## HITS:1 COG:ECs2330 KEGG:ns NR:ns ## COG: ECs2330 COG1168 # Protein_GI_number: 15831584 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Escherichia coli O157:H7 # 4 388 2 388 390 333 41.0 5e-91 MTTYDFDHVIDRRGTFSTQWDYIADRFGRNDILPFSISDTDFPVPVEVQDALKERLTHPI YGYTRWNHATYKDSIVRWFERDGHTKINPDWIVYSPSVVFTIATLIRMKSDPGDGVAVFT PMYDAFYGTIEQNDRVLIPIRLAAADEGYVIDWDSLATVLAEKQTKIFLLTNPHNPTGYV FTKSELARIYNLCQAAHVFLISDDIHRDIVYPGHSYEPMTNVGTSDVALCCSGSKTFNTP GLIGSYAFLPDHDVRTQFLTELKQKNALSSVSIFGMLAQIAAYNGSEDYVEQLTAYTKNN MELVASYLEENLPELQFSLPDATYLAWINVSKLGLTSEELQHRLVNGGHVGIMAGKTYGD TRYLRMNIACPKKKLVMGLERLKKGIRG >gi|225002467|gb|ACIZ01000112.1| GENE 97 95926 - 97635 1091 569 aa, chain + ## HITS:1 COG:frvR_1 KEGG:ns NR:ns ## COG: frvR_1 COG3711 # Protein_GI_number: 16131737 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Escherichia coli K12 # 1 427 1 439 463 82 24.0 2e-15 MLLLREIKVLRRLSQQDFSGGELAKQLKASRRTIVRDIAAINTELQSSGIGMITTQNKYH LTILNPGRLMALLDTSRDEANEILLRLCISETIPMADLIAETYLSRTQIMDYISELNADY ADIFRISSRPGMGMTIKMKRLTRIDIAADCIFEYPQLLDKVAPGTDRLPQLTDYLSENIC PYQTWVIDSQWRAQVLAAFICSPSSGTLTAARQSNQIDNFVKTREALLMGLGKSRDKIVQ MFSEIADDFQLEAIGQSTFESLFTHFVRECAFPRPLSVLSDYDIAKLSAQNPVAFDYAHV VALDLFKISHQVWLDSDFLALYIVQAVNQREAKPVRILFLAPRMSLAQINATIIQQKLHN ISLHMVRSLKEAETIFDQRHFDLAIANVRHDVVEHASISFVLTFSAVVTDQDIAALEQLV NGQYYRENIAAMLAPNHFVGQITGDKFLTVLQKGLQNFVRNDLLDRADAVKIIEREQAGN QLVLNHISIPHIVTNSVTDYRLFAIKPKEVITIDDQPIYLLVIVLVGTSQAEKNTIFSYL YQTLRRYVPADIEDVQDYQQVIKLLKGSV >gi|225002467|gb|ACIZ01000112.1| GENE 98 97769 - 98380 513 203 aa, chain - ## HITS:1 COG:yrbH_1 KEGG:ns NR:ns ## COG: yrbH_1 COG0794 # Protein_GI_number: 16131087 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Escherichia coli K12 # 37 197 43 203 212 173 55.0 2e-43 MKENKLDLVHTYMQREIAAMQLIESQINDVQYCSVIDKIMHLTGRLVFMGVGKTGHIGVK LAATFASLGTPAIFVHATEAMHGNMGMITSEDLVILISNSGETKETLAPLPSLKRIGAAT VAFTGQDDSHLAQACESVLTIPVTHEADDLGLAPTSSSTAALMVGDALACTISRLKGFTA SDFALYHPGGALGQKLLKQGSLE >gi|225002467|gb|ACIZ01000112.1| GENE 99 98657 - 99118 393 153 aa, chain + ## HITS:1 COG:YPO2569 KEGG:ns NR:ns ## COG: YPO2569 COG1762 # Protein_GI_number: 16122787 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Yersinia pestis # 1 144 1 144 147 107 35.0 1e-23 MIEDIITIPLIQLRVKTTDWRDAIKKSGRVLVENGDVTQNYVEEIIRSAEKFGPYFVIAP HVALAHAPRQAGARKLAMGITTLDPPIVFHNQANDPVRYVFTLSATDADTHLKAMQEFVQ LLSMGDFYTTLDRAGSGQEIMAYIKSALAMNKE >gi|225002467|gb|ACIZ01000112.1| GENE 100 99124 - 99414 287 96 aa, chain + ## HITS:1 COG:no KEGG:LC705_00466 NR:ns ## KEGG: LC705_00466 # Name: rmpB # Def: PTS system lactose/cellobiose-specific transporter subunit IIB # Organism: L.rhamnosus_Lc705 # Pathway: Ascorbate and aldarate metabolism [PATH:lrl00053]; Phosphotransferase system (PTS) [PATH:lrl02060] # 1 96 1 96 96 163 100.0 2e-39 MVKVLVACRAGVGSSLMLKIKLNEVISEHKWNLEVIHSSLDELSSFDGPIVVTLSDVAEE LKEEGIHKEIVGIRNLLDKNEIYTKVSKALQDVGVN >gi|225002467|gb|ACIZ01000112.1| GENE 101 99439 - 100698 888 419 aa, chain + ## HITS:1 COG:YPO2782 KEGG:ns NR:ns ## COG: YPO2782 COG3037 # Protein_GI_number: 16122986 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 2 415 5 417 418 293 40.0 3e-79 MKFLVSLLSTPAMLLAVVSMIGLISQRKNPTEVFTGTAKTAIGFLIFGIGATTMTGTLQN FNKLFTEGFHINGVIASPEAATALAQDKFGFAVSMTLIIGFIMNLVFARITPFKNVFFTG GHSLFFACVLALVMKANGFNNTWTIVVGGTILGFCSAALPQLCQPFMRKITGGDFQAIGH FNMFGYALSGLLGNFFKKHVDDTTENIKFPKALSFFKDFLMGFAFVMLILFYIAAIAAGK PAVMKISGGVDWLVFPLIQALTCTAGISVLMTGVRMFLAEITAAFNAFAEKFIPGSRPAL DVPTIFPFAPTAVLVGFLSSYAAGLIGVGIMIAFHFDMVIIPAAHICFFSGGTAAIFGNS TGGWRGAVFGSFIVGLLLVFLPVLLYPAISSMGVSTAMFPNVDYNVVGSLLNSILGLFH >gi|225002467|gb|ACIZ01000112.1| GENE 102 100737 - 101636 699 299 aa, chain + ## HITS:1 COG:lin1474 KEGG:ns NR:ns ## COG: lin1474 COG0329 # Protein_GI_number: 16800542 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Listeria innocua # 4 272 3 272 293 160 34.0 2e-39 MAPLSGILVAMVTPLDDDQEISFKRTDRLLDRLLTEEIAGIFILGTNGEAYVLAENEKLA FAEHVIDYVHGRTKVLVGTGLNGTAETIRFSQKIASLKPDAITLVAPSFVAPSQQELVDH FAAIIHAVDIPVLLYNMPAKTGINIEPASLKQLSKYKNLIGIKDSSGKWENFDGYLANRP ERPFSVIMGSDGRILESFQHGGNAAIASTANLLTANNVALYHAFVNDNIEKAQKFQDRIQ ALRSVLHKATIPVSLKTALNIAGITVGPARLPAKMPREQDALYQEIGDVIKEYELQGII >gi|225002467|gb|ACIZ01000112.1| GENE 103 101651 - 102286 412 211 aa, chain + ## HITS:1 COG:L0022 KEGG:ns NR:ns ## COG: L0022 COG0800 # Protein_GI_number: 15673608 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Lactococcus lactis # 1 171 1 172 213 130 42.0 1e-30 MKKFDLIQRILASGALAVVRAKPKRVLEIAEGIVGGGIPVMEISYTNSDAPEAIDLVHQR LGDRILVGAGTVNNGATAKDAISHGVGFLYSPIFDQEVMSLANEYQIPYAPGCSTVTEAV HAMRAGATFIKYFPYGGLLGPDIIKTIKTPIPEMPLLESGGVDASNVQQWFKAGVEVVGI GSALSKGTSQEIEASAQAIRQEIDAFRSAAK >gi|225002467|gb|ACIZ01000112.1| GENE 104 102348 - 104417 1339 689 aa, chain + ## HITS:1 COG:SA0235_1 KEGG:ns NR:ns ## COG: SA0235_1 COG3711 # Protein_GI_number: 15925947 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Staphylococcus aureus N315 # 8 505 7 505 543 152 23.0 2e-36 MLDIKQLQIIDTMIQNPILTKTRLSEELDFTNRQIDYAIEKLNQQLVDNKMPQIDVDGAY INVPSESYQYLLNLRASENLTALSGYVLSNSERQLFLALLLACHKGYLALIHLQDYLQVS QSTISKDLRVLEQRLLNFQLRIHYDRRSGYRLEGSEDKIRSFMIKLVSKQLFKNHADLLT TCAQLIQQVDVSAKLTQISKLAHASEIDFVENRFLEFGYIFIFMLARLRIKKDYLPARAQ KMNIQSTREYELAESLLNNEGIHNITATEYLTTIILCLSIGGLENMRADRNIFSVTNQFV QRFSDVSGIVFADNHKVTRQMFTHFRSMYYRLQFGYPITNPLTEQVIENYGEVFTLVAQA IQTFEDILGKVPDDEIAFLTIHLISFIYTSDNSKNDYVTAVIVCPNGIGSSALAYLQLTS LFPNIKFLKPFRYADLDSHLADADLIFSTFYRSELFAKGKPCFIIKPIMSAEEKYNLIQE FNTRMSSSTLTIPTLNSVMEIVARTVKNTKQLGQIRRELDVNLFKPKVHQENMKLTLIDV LEEEDIQLGVKVDTPEEAIRIAAKPLKAKGAINQHYVEKMISPDDGHSLDAYIISPGVAL PHTDPKNGAQRVAIGITTLEKPVFFSQAKSEKVKFIFVLSAVNPTDHLMVLQDLMDLLGD ANFMKLLADKKTDSRKVMQYLREKKVKQS >gi|225002467|gb|ACIZ01000112.1| GENE 105 104435 - 104752 169 105 aa, chain - ## HITS:1 COG:SMc02381 KEGG:ns NR:ns ## COG: SMc02381 COG1733 # Protein_GI_number: 15964790 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Sinorhizobium meliloti # 6 102 9 105 133 72 38.0 2e-13 MPACTSTTAKKCPATQLLQAISGKWKAIILYRFTQQAKWHFGELNASIPPCSTRMLARQL AALCTDGLIQKEILSQEPLTTVYRLTARGETVKPVIEGMAEWIKF >gi|225002467|gb|ACIZ01000112.1| GENE 106 104891 - 105535 461 214 aa, chain + ## HITS:1 COG:mll1278 KEGG:ns NR:ns ## COG: mll1278 COG0778 # Protein_GI_number: 13471335 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Mesorhizobium loti # 10 214 22 234 234 81 28.0 1e-15 MNSIAPYYQRHSTRLFTDQPVPRETLTEVIRTANHAPSWENSQPWKVYLAIGKTANAIRA EHFKAVQAHRKSWTEVTPPLAWQKTAQANIDHWQASTANFFNETEAHAFHQAGPMLYRAP ALIYLTIPRAASAYSAYDAGAFGYGVLLAAAANGLGSIPAYEIIRYPEEIHAHFDIPDDE VLLMGIAIGYPAKSKINELRTDRRSLGDFVQISD >gi|225002467|gb|ACIZ01000112.1| GENE 107 105571 - 106308 255 245 aa, chain - ## HITS:1 COG:no KEGG:LC705_00473 NR:ns ## KEGG: LC705_00473 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 245 1 245 245 480 99.0 1e-134 MVKTAPDDPDCLVTELARNAIASDASQLPLKEILAILPLPASFLPRKTLILTATAAHLIK PSTLGFIRSHENSSVYSPTMRQVIVQKLYHGTAKKLPKMLTGPCYAFMPLAAPDHRNVGW IATHRLVDYAITNRQHHRIVTVRFQKGRTLTLPTTYHTARFGEILAGSNLLMDVISQLAR IAEGNLPLTKDAQQQHHIVVTATMARTLMNTTHQREAYFGAKQVVGEEEYRLQAGWDEGL GGDGV >gi|225002467|gb|ACIZ01000112.1| GENE 108 107034 - 107579 384 181 aa, chain + ## HITS:1 COG:no KEGG:LC705_00474 NR:ns ## KEGG: LC705_00474 # Name: not_defined # Def: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 17 181 1 165 165 296 99.0 3e-79 MVTEATGFDFFLAHQGVVYGALARLGIHRGRSDFQDWRDEGMLVYLNYFNRYREPLVDET AIAKFNKLAWRFVFLTLMQRLQKAQHRRELENVPANTTHIQTTTLAMAPGSLQQALELKW QLQQLHRLLTPMERHVLQLRLSGLSDAAIAAQLHVSRQRILQVRKRVQVKYRALSQNCAS V >gi|225002467|gb|ACIZ01000112.1| GENE 109 107696 - 107848 305 50 aa, chain + ## HITS:1 COG:no KEGG:LGG_00485 NR:ns ## KEGG: LGG_00485 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 50 1 50 50 71 100.0 1e-11 MDKELLTYVLDQAVGVVIAVILLTRIERRLDTLITHIETFMAKLDGKQLR >gi|225002467|gb|ACIZ01000112.1| GENE 110 107860 - 108624 866 254 aa, chain + ## HITS:1 COG:CAC1108_1 KEGG:ns NR:ns ## COG: CAC1108_1 COG3757 # Protein_GI_number: 15894393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Clostridium acetobutylicum # 2 187 29 211 217 59 26.0 7e-09 MAMLMADVSSWQPDSDSWFRKLADLGVKAVVVKLTEGTTYQNPKAAAQLAAGRRMGMQVH AYHYAHFHNSAEAVAEGRFFGVTARALGVSTQSVMAADVEAPDLNGELTGLTNVFIQTVK ALGYPHTDLYTMANWMKTRRFDRVALIPKNLWIASYGVDQPGINNVGTWQFTNNFHGLGV DMSYDFFGHYTTRLTGNLNGGVARVPTIRYHTVLAGESWWAIADRYGLNMYKLAALNGKT IYSVIHPGDQLRLN >gi|225002467|gb|ACIZ01000112.1| GENE 111 108849 - 109352 621 167 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 72 1 72 189 62 41.0 4e-10 MVLATFQHLDQTKQQRVLAALVTEFSQHPLAQAQVARIVKQADIARGAFYKYFSDLKDAY QYAFKAVIGRLHMGIAGPEMRRDPYAATAAFLHEADESQDRDFIRMHFTKNSGLVTVGQP PIPADAIEWAVATLCHSAISEALANPEQADLILKHLKAALNQLQVKE >gi|225002467|gb|ACIZ01000112.1| GENE 112 109357 - 110418 1137 353 aa, chain + ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 352 2 357 357 217 35.0 4e-56 MYLSLKEIWHEKLRYGLIIAMILLVTYLVFILSALANGLAQQNTQAIESWDTSRVVLAKD SDINLSQSLLTSEQTKDLKLGKSQAYVGTIGAVATSSQHKEIRSTMIGLDWNQYIGKDMK LVSGHRVQNDHQVVVDTQFKNEGYALGDKIRLSTKGDRYTIVGFTENAKMSVAPVVYGTM TTWRTLHNLPTSFTASGIISKTADFKINTSDLKTYSANTFIQKLPGYSAQNSTFTFMIGF LFVISLIVIAVFLYILTMQKLPNYAVLRAQGVPARTLVATTIDQALILVSLGLVLGGALT AMTAKFMPLGVPMIFSAGLSIAVILGILLTGFLGAIIPVRTILKVDPVTAIGG >gi|225002467|gb|ACIZ01000112.1| GENE 113 110423 - 111112 230 229 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 22 222 20 221 223 93 32 7e-18 MPAIELKNIIKNFKTPTSDVEVLKNVNFSADAGSLSLVLGPSGSGKSTFLTIAGGIQTPT DGIVTTAGENLEQLSGKARDALRLDKIGFVLQSYNLVPYLTVGEQFKLVDKIKPKGNLSH AALSELLDDLGIANLVNQYPASLSGGQTQRVAIARALYPDPAIVLADEPTAALDSPRVAV VGQLLADLAHKHNKAIVVVTHDVRLEKFADRKFTLLDGKLREGEPEYAA >gi|225002467|gb|ACIZ01000112.1| GENE 114 111279 - 112649 1233 456 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 5 454 2 446 454 318 38.0 2e-86 MDKPKIIVVGASHGGHQSVLELLHRYPDAEITMFEAGDFVSFMSCGMELFLEDQVTDVND VRNFRPDDLIKRGAHVFSNHEVTAINADVKTVTVRDTKNGTAQDYPYDKLILSSGVRPNS LPVPGNDLKNVFLMRGYDWATSIKAKLADPAVKHITVIGAGYIGIEAAEASRKAGKEVTL LDMIDRPLGTYLDPDMTDILAKELTDKGVELKLGVKIEAFTGDGAVSAVKTDAGEIATDL VIQAAGIQPATEWLKGTVSLDDRGFINTDPYLRTNLPDVYAIGDATLVYSVPAQQKVPIA LATVARREARYLAANIFAEHPARPFGGVVGSSALSVFDYHFAASGLNTFTAGRSNVQVDT AFYADSLRPAYVPEANGNPQVCVNLVFDPQTHRLLGGAVLSTYDVTAQGNVLALAIQHGL TLEDLAEADFFFQPGFDRQWSLLNLAAQHALGEPRF >gi|225002467|gb|ACIZ01000112.1| GENE 115 112897 - 113715 779 272 aa, chain - ## HITS:1 COG:lin0298 KEGG:ns NR:ns ## COG: lin0298 COG0561 # Protein_GI_number: 16799375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 269 1 266 270 173 36.0 3e-43 MIRLIAVDLDDTLLNSHKQLSPATVEGLQTALASGIKVVPCTGRPLPGVRTTLDALGLHG DDQYVIVQGGGVVQSTSGKIIAQKFMNHQDYKDFSTFATSVSAAGIDSNVLTPAGDVYTA DRNISRYTVLQAWENHAGIKVREPQEMPDDFVIAKGILLGEPEQVANIQPQAEAEFGNRF TVIRSMPFMLEIMPQGVDKGWGLAQLTQHLGLKPADVIAFGDEHNDLDMFDFAGVSVAMA NGQNVVKSHADYVTASNDDDGVVKALKHFKII >gi|225002467|gb|ACIZ01000112.1| GENE 116 113838 - 114110 280 90 aa, chain - ## HITS:1 COG:no KEGG:LGG_00493 NR:ns ## KEGG: LGG_00493 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 90 1 90 90 171 100.0 5e-42 MPTSLPLIEQSRFKKHLKQLLQAGRFTKADFQQVLAYLQTSTPLPEKYDDHVIKKRKPDR ALFIKGNWLLIYRVEPDAIRLIDVGRHGEI >gi|225002467|gb|ACIZ01000112.1| GENE 117 114349 - 115356 742 335 aa, chain + ## HITS:1 COG:BH1250 KEGG:ns NR:ns ## COG: BH1250 COG1609 # Protein_GI_number: 15613813 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 334 1 331 338 257 42.0 3e-68 MATISEVAKLAGVSVSTVSRIINNKPHVSPSKAALVAEAMKKLGYQPLQAARQMRGSGSQ TIAVTVPYITNPFFSELVAAIERTADERSYKTVIVQTFGQKSHERNALDFLKTNQVDAVI MCAIENDWDLIKQYRQYGLIAVCNEYVADSDTLMVRADQESGMYAGAKYLLNRGYRKLAF CTGQKAIRYNSEAEDLNSDRYRGYLRALQEFNLEPVMEWQFTDINTIADGQKLLQRLMVM KKRPDAVIAGSDQVAAGIIAEAQTMQLKVPEDLAVLGFDDQPLSRVVARPLTTIHQPVHE IGDRIANMVADALEGKSIEVKEVVLPLSLVVRQSV >gi|225002467|gb|ACIZ01000112.1| GENE 118 115410 - 115901 463 163 aa, chain + ## HITS:1 COG:SP0061 KEGG:ns NR:ns ## COG: SP0061 COG3444 # Protein_GI_number: 15900006 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 148 1 148 158 109 35.0 2e-24 MTVVLARVDQRLVHGIVVNQWSAEVQPKRYMVIDDVVSQDENVKASMRLSKPAGTGMSII DTEKALTNFKAGKYDAQRVFVIAKEPDTMLKLLDAGIEIPRVDIGIIFAEDGRTQISKFV SVNQQEVNDFRALEKRSVPVNIRYVPADAPIPLERALEGKTIQ >gi|225002467|gb|ACIZ01000112.1| GENE 119 115933 - 116739 918 268 aa, chain + ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 4 265 5 262 267 170 40.0 2e-42 MPHILQDILIILLASYATLDNQGITIMNYWPVTVGLFAGLIMGDLPTAMTIAGTFQLMSL GVAGLGGASVPDYGLATIVGIYLSARTGAGLGAAVAVGLPVGLLTIQLDVLIKIINNFIA HKAQAYAHAKEFNKMRMINWLGPLFFGLKNFIPMILIVTVGPSAISALLKIIPKWLTNGL TIAGSMLPVVGIGMLMHYMPLKKYIWVLMIGFVMSAYLKVPILGVAIIGLALAIYTYQNL ISASKKREVAAANNAGTTDDDEGDDYDE >gi|225002467|gb|ACIZ01000112.1| GENE 120 116732 - 117553 609 273 aa, chain + ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 3 268 11 275 275 214 44.0 1e-55 MSDAQPKLTKKERHSAILRYMAMGVNNFNYETQQGPSVVWAFSKVLRKIYPDDDEYVAAL DNHFKYFNTTTAMAGMILGATLAMEERDGIKSKDAVQALKTSLMGPFAGVGDTIIWILLP TIMGSIAGYMALQGNPLGAIIWILVDILLFWIRIKLFDIGYDSGVKLVTTMANQLSAFTE AASVMGITVVGTLIATVVKVYTPLQFQFGKVKLAMQTGILDKIMPALLPALVAWMVYKLL GSKKWTPNRVIILILVIALVGSFFGILGVQPTK >gi|225002467|gb|ACIZ01000112.1| GENE 121 117589 - 119838 1581 749 aa, chain + ## HITS:1 COG:SP0312 KEGG:ns NR:ns ## COG: SP0312 COG1501 # Protein_GI_number: 15900245 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Streptococcus pneumoniae TIGR4 # 65 748 2 678 679 640 46.0 0 MNQKNQIVGEQYRFTVITDKMIRMEYQPEGQFEDATTQIVTNRDFAQPKFKVYRDMDGFA VQIETDSFHLYYRDGEFNGANLFIDTKYNYQTHYSRWHYGDSDPKNLLGTARTLDGADGS IPLAPGIMSKNGFAILDDSQSMLQSGSTIRNRSVAEVDIYGFAYGHDYRAALRDYYQLTG FPPSVPRFALGNWWSRFYPYTQKTYLDLMERFQKSGIPISVAVLDMNWHITDIPAKYGSG WTGYTWNRSLFPDPVKLLQTLHAQGKRVTLNVHPAAGIRPSEAQYQAVAKAVGIDPASQR PVLFDLNNRQFVKAYFNLVHHPLELEGVDFWWIDWQQGKARSRTQIDPLWTLNALHFLDQ QQEKGDQALILSRYAGPGSHRYPIGFSGDSIASWQSLKFQPYFTATATNIGYTWWSHDIG GHMHGHYDPELSLRWLQFGIFSPIMRLHSSDNPFMGKEPWNYDAVITKTMIRFMRLRAQL VPYLATADILTHQKGRALIEPIYYRDSEAEEAYQFKNEYFFGSEMLVVPITSPSDETTGL ASVKGYVPAGTWTDFFTQQIYTGPAVVKFHRNSEDYPVLVRSGGIIPLAVDPMAPVDTLP GAMTIKLFPGERNKYVLREQTASGMAQTKFTWDPKTKIFTIKVSDPANIIPTERVYQLEA IGYEGYLDPIDGHKDHELTLKLKPQDHQGAKLARVFTILQHAKLGFDLKKQLWQAIKDMP RAKAALALTSLAPESLSDALLEILLNDEA >gi|225002467|gb|ACIZ01000112.1| GENE 122 119962 - 120378 414 138 aa, chain + ## HITS:1 COG:STM4535 KEGG:ns NR:ns ## COG: STM4535 COG2893 # Protein_GI_number: 16767779 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 1 121 1 122 140 85 36.0 2e-17 MERTIVLASHHRLADGLKDTLEFISGGSQDVVAMAAYLDNQPVEKQVDTLMAALPADRDV IVLTDMTAGSVNQKFFRYRTRPHTHIISGMNLPLALGVTMEPTDQYISDSRIDALIQEAK NAIVNVNEIQVEADDDDE >gi|225002467|gb|ACIZ01000112.1| GENE 123 120368 - 122056 916 562 aa, chain + ## HITS:1 COG:lin0223 KEGG:ns NR:ns ## COG: lin0223 COG0366 # Protein_GI_number: 16799300 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Listeria innocua # 2 562 1 553 553 607 51.0 1e-173 MMNEIPWWKNSVVYQVYPKSFNDSNGDGIGDLNGITEKLDYLADLGVDVLWLNPIYRSPQ VDNGYDISNYRDIEPQLGTMADFEQLLHAAHDRQLKIILDLVVNHTSDQHPWFKAAKSSV SNKYHDYYIWKKPVDNHVPNNWGSSFGGSAWAYEKDLGEYYLHLFARQQPDLNWKNPKVR QEVYELMRFWLDKGVDGFRMDVISLISKDPAYPDGPLIQGKVYGSYYAGAANGPKVHNYL QEMHEQVLSHYDIMTVGETPHTTAEQAQLYTAANRHELDMVFHFDHMHLDYGKYGKFSTN RFKLVDLKAVLARWETTLAQVDGWNSLYWSNHDQPRPVTRFGDEGQYRIRSAKMLGTVLH MLQGTPFIFEGEELGLKNVRFDHLNQYNDLETKNIFSELTNQHHESPEAAMEAIYLHSRD NARTPMPWDGSQKGGFTTGKPWLELNPDHQQINAEKDLADSDGVYHYYQRLIKLRHEEPL VTTGDFELLAPDDPDLFIYLRRGKNETLLVAGNFSESQRRWPLPDALQNKQVTTLISNVP IAKRVGKIITLPPFGSVVYKLQ >gi|225002467|gb|ACIZ01000112.1| GENE 124 122123 - 122887 359 254 aa, chain - ## HITS:1 COG:STM1264 KEGG:ns NR:ns ## COG: STM1264 COG1708 # Protein_GI_number: 16764615 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferases # Organism: Salmonella typhimurium LT2 # 16 226 21 231 262 66 27.0 4e-11 MDKTNQLLALLKTSYTSILTTNLVGIYLHGSYVMGCFNPAVSDLDFLVVINSPLSNKAKA SIMHVTLEKLWPLSPAKGLEFHILLKQDLSTFSEPVPFDFHFSKMHYQEYLREPAKYINQ MHGTDPDLTAHLMIVNQYGQVLTGEPIAEVFAPVPAQAYLKSILYDVGNADTTIINQPMY TILNLCRALAFKNERLVTSKSSGGEWALATLSPKWRPLIKLALNEYQSGSGRVSEYQATE LKAFAGYMLKRLVN >gi|225002467|gb|ACIZ01000112.1| GENE 125 123008 - 123136 114 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKPNIEKSAEQISEYLRGNPQHVRVETIKLPETSQDTTAHQ >gi|225002467|gb|ACIZ01000112.1| GENE 126 123297 - 124100 522 267 aa, chain - ## HITS:1 COG:no KEGG:LC705_00491 NR:ns ## KEGG: LC705_00491 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 267 30 296 296 400 100.0 1e-110 MWLIQQKKIQLTSDDFMTALIHALTETTTHAAISQYADYADYEDDDDPFGDNDFDDDDEA VDDDGYDAEIEKALADVENDPEFEEKAIDFSSPQTQTLLDLLSRFIESSAWDRLPEKVQD PDLLTMLVLLIMQSNKVMFNHEIKAWTKEDLSTTLAFILSDKEIIKANQRKPVLQALAAF IRSTANKGLWSAKQVKDFAEAVDEKIKALAPESSTPEVKAKKDNKPTVGRVVPMKKFKKG KYKKESFVEASFKPSCCIRLWRDGFFI >gi|225002467|gb|ACIZ01000112.1| GENE 127 125181 - 125276 65 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSDFEALSLMIMAALLLIAVIELVLKLIDRD >gi|225002467|gb|ACIZ01000112.1| GENE 128 125928 - 126785 693 285 aa, chain + ## HITS:1 COG:SA0422 KEGG:ns NR:ns ## COG: SA0422 COG1464 # Protein_GI_number: 15926141 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Staphylococcus aureus N315 # 9 276 4 265 280 146 36.0 5e-35 MRSWKKLVLVGAALLALVSVTACGKTTSSTATSSNKTIVIGSSGSDYQIWQHIAQSPQAK KAGVKLKVKQVADGNVTNSATAEGQLDVNAFQSYAYFEQYNKANPSQKLAALGTTYLEPM GLYSKKYKRLNQLPDGATIGISNDPANATRGLLLLAAAKLITLKPDFNALSTVKDIQSNP KHLKFKEVDPSVQVLPDLDAGLISNTRALDGGLNVLKDSLVHEKLGQDTRANVNILVTAV KNKNKPELKKLVTLYHNSTIQAWIKKTFSGTKIEVNKPISYLQKK >gi|225002467|gb|ACIZ01000112.1| GENE 129 126996 - 128012 929 338 aa, chain + ## HITS:1 COG:L86424 KEGG:ns NR:ns ## COG: L86424 COG3049 # Protein_GI_number: 15673817 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Lactococcus lactis # 2 276 4 269 333 144 33.0 3e-34 MCSSMTIKSLQGDIFWGRTMDYNTSFFHESPAGGVPGKIVSLPANQTLPAQTATWKTKYA AVGVGVDQSVALFDGVNSEGLAGDLQVLVECSWASAESLAKRNLKPIKGEEFVTLALTTC KNVAEVRALASQYGLLDEPFQFGGQGVKIPLHYTFVDPSGAGLVIEPTDHGAFKLYDSVG AMTNSPEYGWHTTNLRNYVSLNDRNYPEGADLGDQHLEPIELGTGYGMFGLPGDYTSPSR FVRAMFVSRNLDPFNSNEGIRVLYNAFKTVLIPQGLGRDPKHSILTDYTQYWSGYDLSKR AIFVQDANTLTMTTKTLDPNLTEVTYDDLVKTEQFNQL >gi|225002467|gb|ACIZ01000112.1| GENE 130 128191 - 129156 859 321 aa, chain - ## HITS:1 COG:no KEGG:LC705_00494 NR:ns ## KEGG: LC705_00494 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 321 1 321 321 553 100.0 1e-156 MDYQVKLQRHASREIDLYWPDFQKSSDYTALMQDPDFAKIPPQEIRSILVTFFSESFENL RSTIKALSAEAVSIALETTLQQISDKHRRRSEAIAIAAELIKSMMIWLIRTKRVKLTIID FVDALMGALLTTTYVLGLVEEGDLASPRAGQRDERFDDDDDMTIDSASMATLIEQLMLFF DSKTWHQLPHSAQDEEFFGAVIFFLIQTIQNMFGHEPKEWTSQDIGAALLLLLRDTKIVP RDKQQALGKSLAIFIKSTANSHLWTATQLKALADTAQAQVKEALAKMPATPPKATAAATP ATGPSDRVIPMADWQKGRHKK >gi|225002467|gb|ACIZ01000112.1| GENE 131 129427 - 131121 1346 564 aa, chain - ## HITS:1 COG:lin0483 KEGG:ns NR:ns ## COG: lin0483 COG4716 # Protein_GI_number: 16799558 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Listeria innocua # 9 563 54 565 566 379 41.0 1e-105 MIKHKAIMIGAGLANMAAAVYLIQEGHWQGDQITFYSLDDHGSNDGAPAEATADEYWNKY HPMENTKGYVARGGRMLNYRTYVDLMDLLSRIPSATEPGLTAEEDTRQFDAQHRTFDKAR LMEGGIGIIQAGHLGLNNKDRLLLTKLIMMPDSEEEKLDNVSIADYFKDDPHMFQTNFWY MWETTFAFRVESSAQELRRYMHMMIYEFTQIEHLVGVNRTRYNQFESIMLPLINYLKDQG CRIILNRRVTAFEFKDTAMTDEITVTGLKMLNTETDKPEHVVVDDDTAVFFTNGSITDSA TQGDFDHPAVENMDYGAAASLWKQATDHFYNLGNPDKFFADRAASEWVSFTLTTKDHLLL NEIERITTQVPGNALNSFLSTQPITALGQKDVMMSIVVHHQPHFTTQKPNETVLWGYFLY PRRYGEFVNKPYIKMTGKEMALELIGQLAKVDPGPDNIRDRQDEIMASIINNIPVYMPYA SALFNNRAKVDRPEVIPAHSTNLAFTGEFAEQPFQMVFTEQSAVRSGEIAAYHFTGIPMS HLVHKPRYDKDIKTLMRATKKMFE >gi|225002467|gb|ACIZ01000112.1| GENE 132 131133 - 131261 161 42 aa, chain - ## HITS:1 COG:no KEGG:LGG_00504 NR:ns ## KEGG: LGG_00504 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 42 2 43 43 71 100.0 9e-12 MKKFLWTALGLALVAGGTACYFANKMELFKDDADAYKKFESR >gi|225002467|gb|ACIZ01000112.1| GENE 133 131350 - 131916 536 188 aa, chain - ## HITS:1 COG:lin0482 KEGG:ns NR:ns ## COG: lin0482 COG1309 # Protein_GI_number: 16799557 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 160 1 162 186 65 30.0 5e-11 MATSDQTKMQFATTLKDLMHHKPLDRITIAELSAATHVNRNTFYYHFEDIYGLLKWTLEA DIGRKVMQNLGAATWEAKYQLVLDYIIANQAFCLNAYHSVGRDMLEEFLFQSATDMVKPV VLDIDPTTPAKMVADICNFYGAAIVGQILLWLAQSLQEPERDLIKRADLMLNGSIAFIVH KQAHGKER >gi|225002467|gb|ACIZ01000112.1| GENE 134 132006 - 132374 475 122 aa, chain - ## HITS:1 COG:BH3395 KEGG:ns NR:ns ## COG: BH3395 COG3412 # Protein_GI_number: 15615957 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 4 122 7 125 128 124 54.0 5e-29 MAMGMLLVSHVPAIASGLETLIKQVAKDVPITTAGGTSDGQIGTDLDHIQKAINDNPASE LLVFYDLGSAKMNLDIAEEVSDKQMHVYDVAFVEGAYAAAALLEANVTLDKIEAQLKPLK VK >gi|225002467|gb|ACIZ01000112.1| GENE 135 132523 - 133104 516 193 aa, chain - ## HITS:1 COG:lin2844 KEGG:ns NR:ns ## COG: lin2844 COG2376 # Protein_GI_number: 16801904 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Listeria innocua # 9 190 10 194 198 165 47.0 4e-41 MLNAEILTKWMTNFENRITQQKDHLTELDRVIGDSDHGNNMERGVNAIKAAFEKTPPTAD LAQDFKTIAMAMLSKVGGASGPLYGTAFLEMAKLAKTDTDFGDLVEAAAKGIAKRGQAKP GDKTMLDVWAPAADLIKQGKLDDAAIDKLVEATKPMTAKRGRASYLGEKSVGHIDPGAAS TGELLKAYLEARA >gi|225002467|gb|ACIZ01000112.1| GENE 136 133091 - 134110 1197 339 aa, chain - ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 15 333 1 316 316 365 57.0 1e-101 MKKIINAPGDIVPEMIAGLTASYPQYLKQIPETTAVVRNDAAFKQKKKVGVISGGGSGHE PLHAGYVGQGMLDAAVAGQVFTSPTPDQIYAAIKAVDQGEGVLMIVKNYSGDVMNFDMAK DLASVDDINVESVVVDDDVAVKDSLYTQGRRGVAGTIFVEKIIGAAAEAGLSLDELKKLG DAVVKNTKSFAVALHAATVPEVGKPGFDLKPDEIEFGVGIHNEPGTGQEKLPTSKALAKQ LIGKLTVEFKDPKAHAYAVLVNGMGATPLSEQYIFMGDVLNELHAQGLKADFTKAGNYVT SLDMAGISLTMLALDDPQWLNYLNASAHTVGWGDTDVKR >gi|225002467|gb|ACIZ01000112.1| GENE 137 134303 - 134731 464 142 aa, chain - ## HITS:1 COG:no KEGG:LC705_00501 NR:ns ## KEGG: LC705_00501 # Name: not_defined # Def: redox protein, regulator of disulfide bond formation # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 142 1 142 142 284 100.0 6e-76 MADERWQHPLYTTEAINDEGLEGHAYVPGGLKVQTSSPLNDHPGTNPEQLLGLSLSTCLE ATLEAVEKEHGLPHTGAVRVKVAFIGERAEYQFLVHAQVMVKGVDLDTAKAFTNEIENRC PVSKLLKNSGNYTIETVTDFAD >gi|225002467|gb|ACIZ01000112.1| GENE 138 135261 - 135950 181 229 aa, chain + ## HITS:1 COG:no KEGG:LC705_00502 NR:ns ## KEGG: LC705_00502 # Name: not_defined # Def: peptidase S54, rhomboid # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 229 1 229 229 395 100.0 1e-109 MLQKLRRSNLVNIYFGARGTFLTCFTLMFFYFLFSVLTNTFLIPSDKFVGNIPSILRGEY WYIITGPLFHYEWHHLMWNLLPIAVLGPFIEWKIGSWVFVTSFFVSGWVGSSIFCFVFGE FIQSILGIGLYLCVFYGASIAVYALFPLTIAAFLIKEPEYSFITKAVVIGAFSYLILGLF PKADASDAQRFVEIAHVSGFIAGIIGAIVVSVIKLRRKVVSFFLRRSTD >gi|225002467|gb|ACIZ01000112.1| GENE 139 136442 - 137050 404 202 aa, chain - ## HITS:1 COG:no KEGG:LC705_00504 NR:ns ## KEGG: LC705_00504 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 202 1 202 202 370 100.0 1e-101 MQFSAKKLSVLGLAIVLGSVGPLSAVTSVHAAESDTAISDSIQPNNGGTLDDLIDQTFGK SAPDYSGEINWSDTIIHPSSKSFSQLYAELSPEDKANFDTLASHYGWSDSEKTQFLQSKA GIADDPAVQARWKVAVIKAVFKAAAKVLGAKMGEKTLSDWVNYLTNFEGDMQDGIQSFLV TQMGWNSTAAYWTARTIVFLAF >gi|225002467|gb|ACIZ01000112.1| GENE 140 137077 - 137256 133 59 aa, chain - ## HITS:1 COG:no KEGG:LC705_00505 NR:ns ## KEGG: LC705_00505 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 59 1 59 59 62 100.0 7e-09 MLKLWISFLVTFVIAMLLAFLYKQTQSGIVLSTIFIFGLISFAILIFIAYKSISNALKS >gi|225002467|gb|ACIZ01000112.1| GENE 141 137638 - 138372 194 244 aa, chain + ## HITS:1 COG:no KEGG:LC705_00506 NR:ns ## KEGG: LC705_00506 # Name: not_defined # Def: transcriptional regulator xre family # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 244 47 290 290 468 100.0 1e-131 MMKILKPTFMSAEEFCQLIDEQSESPTFIFKKIARYYDEMNVAGLKQLVTVYKRDKLLTT PNRLVLLTIQSCIDELSEKKHLLSQDDCDFVQGYLLHPGRWFSFEYIVFANLSFSMPAKI NLRVSKKMVRAYEQFHLPSYDSLLVNVLYNLSTSFLDQEDPKLSARFLNFLDLDKLNHNN LYMRHHITFLKLVIRFQTNPLDKANVEKLKVFLEATRLIDETLFKKNIDWIESLKINPVI ILGK >gi|225002467|gb|ACIZ01000112.1| GENE 142 138615 - 140030 1088 471 aa, chain - ## HITS:1 COG:no KEGG:LC705_00507 NR:ns ## KEGG: LC705_00507 # Name: not_defined # Def: DNA polymerase III subunit alpha # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 471 1 471 471 863 100.0 0 MVQSRPHRKPSHSPRQARRQLNHLLRDPIIKPRNAAEVRTRLNELMAVLQHRTPTAKQPA TVNQVSPRGDVSFDLARWFPEGGRLRYMLRPRSAILPVKFKLKDFGNHRKSLALQLAAAV SAAAKRLDRLDRQRQLFAFMRPFRDWVHLLALGLTNWAENGQVAFALPDINGVYVTTAPA SDAAIWLARLFDITLGTADQSLVSLQHQRQVQADQLMARLAAKFAREEMPLVQAAQRRAA KSLQLNPTLVTELASDQPALTTHRDVIDRLAHGDYVVIDTEFVADRNQLDLTEISLLRIR QHQIDQTFDIFTQLPAGHHVMPFSVKITGITDDLLEKYGQPLPLVKTALQQLLQHELVVG FALSNDLRAIESGLAIKVAPLQAFDAAVLARKTFGIGKKHTPSLQHYKEALGIDLPSHTA LSDAKTTMALLEHLIWQGHPLITRDIGFSQRPPEHANNPEPDQKPDSYNKD >gi|225002467|gb|ACIZ01000112.1| GENE 143 140254 - 140439 60 61 aa, chain - ## HITS:1 COG:no KEGG:LC705_00508 NR:ns ## KEGG: LC705_00508 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 61 1 61 61 105 100.0 4e-22 MQRQGHVKLASLHDHALKGAHSGERALRVAPDWLLVYKVDAEALILMLLATGTHRDTLNI E >gi|225002467|gb|ACIZ01000112.1| GENE 144 140467 - 140739 187 90 aa, chain - ## HITS:1 COG:no KEGG:LC705_00509 NR:ns ## KEGG: LC705_00509 # Name: dinJ # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 90 1 90 90 157 100.0 2e-37 MTKKSRISVRIDTKTKERALHVLNSMGLDISSAINMYLKRIGDTGALPFTPPMSFVDQLQ VAEADVKAGRIKSFKTVDALMKDLYSDVDD >gi|225002467|gb|ACIZ01000112.1| GENE 145 141301 - 141549 196 82 aa, chain + ## HITS:1 COG:no KEGG:LC705_00510 NR:ns ## KEGG: LC705_00510 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 82 1 82 82 116 100.0 2e-25 MAVWDFIQIVFTAVVIIWIVITSKGKADRRTKELIWIIIGLVVVGNIAGYIIASERSQWA IAYNYSFAFFQLVILWSFARNF >gi|225002467|gb|ACIZ01000112.1| GENE 146 141792 - 142085 199 97 aa, chain + ## HITS:1 COG:BS_yceK KEGG:ns NR:ns ## COG: BS_yceK COG0640 # Protein_GI_number: 16077366 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 1 97 6 100 100 78 42.0 4e-15 MDIKQSVITENFKQRLFFALSDPGRYKIVRMLYHVGHEMGCNELNEHVEIDKSTMSYHLR TLREIGMITTRTQGRQKFVTLNREKIEAAFPGLLERL >gi|225002467|gb|ACIZ01000112.1| GENE 147 142167 - 143330 918 387 aa, chain + ## HITS:1 COG:BS_yceJ KEGG:ns NR:ns ## COG: BS_yceJ COG2814 # Protein_GI_number: 16077365 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Bacillus subtilis # 9 374 6 373 390 241 43.0 2e-63 MKHRQLSLLFFLVMFVIGTDTFLVSPLLPTLTHYYGITTSLSGFIVSAYAIGYMLSALLI GPISDRHDRKKILVGGLVVFTVATASCGLANTFAWMLITRFVAGIAAATAGPQIWAAIPV LFPRQQVVKVMGYATAGLAVAQIVGVPLGSYLAVWSWRFPFFFVGAIALILTLLVMRLMP SLNDAKAAPASESIYRQLVGNHPVMKLLAAYLLFQTANFCGFAFIGTWFAKSFNLSVGAI GSFILLIGVGQFVGSLLGSRLVTWLGQPHAFLLEFILFIIGYVVLPFANSPLAATIILAL IYTIGGALLPLFMSTLQEHAGTARSTISALANAVMYLGEAIGGVIGGVLIKQFAGFSGIA TFTAVVAVLAMLLYAQQGYFKQLQTSR >gi|225002467|gb|ACIZ01000112.1| GENE 148 143484 - 144059 370 191 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 6 184 2 180 185 147 39 4e-34 MPANKQRCAWADTTNDLMRQYHDTEWGRPSHDNRHLFELLSLEIMQAGLSWQTVLNKRAA FKAAFADFDYQQVAQMTPQIPALLKNDQIIRNRMKVTAMIKNANAVAQLVANGTDFDHYV WNFVSNQPIQHHIERHEQVPNTTYLAKQMSKQMKKDGFAFTGPVVVYSFMQAAGLVNDHE TGCFVYQQLGQ >gi|225002467|gb|ACIZ01000112.1| GENE 149 144202 - 144798 548 198 aa, chain + ## HITS:1 COG:MJ0014 KEGG:ns NR:ns ## COG: MJ0014 COG2452 # Protein_GI_number: 15668185 # Func_class: L Replication, recombination and repair # Function: Predicted site-specific integrase-resolvase # Organism: Methanococcus jannaschii # 6 190 12 194 213 138 41.0 5e-33 MFKPNEMAKRLGVTVKTLQKWDNSGKFKAHRTPTNRRYYTEDQYLAYISHNDQPKKRLQV AYARVSNVGQKDDLANQIDFLRRYANGKGIILDEVITDIGSGLNYKRKKWNALLDDVMAG HVETIFVTYKDRFVRFGYDWFERLAQKFDTQIVVLNNPDLSPQEELTEDLISIIHVFSCR LYGLRKYKKKLEDDPSLK >gi|225002467|gb|ACIZ01000112.1| GENE 150 144833 - 146014 436 393 aa, chain + ## HITS:1 COG:TM1044 KEGG:ns NR:ns ## COG: TM1044 COG0675 # Protein_GI_number: 15643802 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 1 387 4 373 405 126 28.0 7e-29 MIKTHKIKLYPNSTMRKELDKLFDYRRFVWNQALEIWNDMYDASLVMIDKSIRPNERKVR DELVANKADWQFERSARVLQLAVNDLSKAWANYFNPKMPNHDKPRWKSKKRSRKTFKTDR AQIVNGKLRLDQPRGTKLWYDIKLAELPRWRGDIKQVCIVQDADGYYASLSIEAAVLAEK RPIRRVTGVDVNVGKFDYRTASGYAIQPTIPASLAALYARITHYQKQLARKRTTNPKRFN SATYRATRTKLKRNYQRVERIQMDLLNKFTTKLIVDNDLIGIEDLDNQHMRMNRRLAKNL HRSMFGKFKIMMQYKADWNGSTLILADPMFPSTQRCSKCGYIKTGEEKLTLHGNAKYHTG HDDYICYQCGARMRRDENAVDNLIDYAKSKVQG >gi|225002467|gb|ACIZ01000112.1| GENE 151 146050 - 146265 87 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|199598668|ref|ZP_03212083.1| ## NR: gi|199598668|ref|ZP_03212083.1| hypothetical protein LRH_10972 [Lactobacillus rhamnosus HN001] # 1 45 1 45 77 86 100.0 5e-16 MMNYFRVGISLLTGLNEMLNVNQERKYIEPLLVSKRHSSTFYIAAYLIKIQQPIYTDLKP KRGLINGNDNL >gi|225002467|gb|ACIZ01000112.1| GENE 152 146246 - 146464 238 72 aa, chain + ## HITS:1 COG:no KEGG:LC705_00516 NR:ns ## KEGG: LC705_00516 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 72 1 72 72 134 100.0 1e-30 METTICKIGDSVGVIFPRALQAEVGRKYKISKVKDTFVLTPLRSDLFAAAADWQGFRDAV TDEDLAWDEIED >gi|225002467|gb|ACIZ01000112.1| GENE 153 146593 - 147474 984 293 aa, chain - ## HITS:1 COG:CAC0827 KEGG:ns NR:ns ## COG: CAC0827 COG0191 # Protein_GI_number: 15894114 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Clostridium acetobutylicum # 3 276 2 276 287 331 61.0 1e-90 MPLVNAAELVKAAHKGHYCIGAFNTNNLEWTRAILAGAQELNVPVIIQTSMGAAKYMGGY EFCQTMIEAAVKAMDITVPVVIHLDHGNYEAAKEAIAAGYNSVMFDGHDLDFEDNLEKTK EIVKLAHAKGISVEAEVGSIGGEEDGVVGEGELADVEEAKTLAATGIDFLAAGIGNIHGQ YPDNWKGLHFDRLQELNDAVKMPLVLHGGSGIPQEQVQKAITMGISKLNINTECQLAFAK ATREYIEAGKDQQGKGFDPRKMLKPGTDAITDTFKEITGWIGNKPVKMVPEAL >gi|225002467|gb|ACIZ01000112.1| GENE 154 148063 - 149796 1527 577 aa, chain + ## HITS:1 COG:lin0730 KEGG:ns NR:ns ## COG: lin0730 COG0028 # Protein_GI_number: 16799805 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Listeria innocua # 4 577 5 576 576 630 54.0 1e-180 MATKAADQLVSVLMDWQVKHVFGLPGDSIDTTVDALRRQQDKIKFVQVRHEEVAALAAAS TAKLTGGLGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALLGQVTTSNLNEGFFQEVNTPK LFDDVAVYNKTVMASDNLGQIVDTAIRTAFTEKGVAVLTIPDDLPDQKETTSYRDSAAAF ALNVPEVDPKQLDDVASLLQKSQKPLALIGRGAENAGEAVQKFVEANHIPFIQTMPAKGT VADDHPNSLGNVGKLGTKPAYEAMKATDLLFMIGTNYPYTPYLPDAGQAKCVQIDTQPEN LGKRYSVDVAVDGDVGAFLTELNAKGALRDDDRFLKACRKNMESWDKWMAEKRLLDTNPA SPEAVFATIDQTAPKDAVYSIDVGTSTSWGARFLNVQPTQKYTISAWLGTMGCGLPGAIA GAEAFPKRQNISVAGDGAFAMVMQDFVTAVKYKLPIIMVVLNNQKLAFIEYEQQSAGQLN YEIDLADMDYAKIAEAAGGVGYTAHSNAEFKEALTKAYQETDKPVLINTYVQDDAPLPGK IVGEEAKGYMKYGSQYLENYWKIPSMPPLKDIMRQFF >gi|225002467|gb|ACIZ01000112.1| GENE 155 150008 - 150295 246 95 aa, chain - ## HITS:1 COG:no KEGG:LC705_00519 NR:ns ## KEGG: LC705_00519 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 95 1 95 95 168 100.0 5e-41 MKVQPEEVIASMEQLSVKLSHNHPSSETARYVAKSLKELKNSHGTAFTGALQSFFNFAPS VKLSDRFSFTVEEKALWDKVFSFKQLGNNLWPLSL >gi|225002467|gb|ACIZ01000112.1| GENE 156 150498 - 151511 757 337 aa, chain - ## HITS:1 COG:MT1973 KEGG:ns NR:ns ## COG: MT1973 COG1680 # Protein_GI_number: 15841394 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Mycobacterium tuberculosis CDC1551 # 35 307 79 345 371 117 33.0 5e-26 MHNLQGYQLINKKYQLNGATVLVDAHRMLSYWQNGMADFAKHQPFTLNTTSGLGSLSKQF TANSILLLNAAGKLNIDAPLSDYLPEYRFAKQITLRQMLHMASGIPDYTELLLADYAKKM PDASESHLSYPILEDLNGNDALQQIIELLNQHPLDFAPDAKGAYSNSNYYLLGHIIRQVA NMPLRDFLNQHFFEPLAMTKTQLGTQHADANSYDDLDFTNGKPVALGRGHYQGGDGAVVS SLADLAIWARAVLQRRILPESAWDEALTLTHDFYGMGWMKSRTQHWLSHNGHIFGYWAFF DVSFEKQLAQITLTNMSPGVETLKKWQEEMANWRTSL >gi|225002467|gb|ACIZ01000112.1| GENE 157 151554 - 152621 901 355 aa, chain - ## HITS:1 COG:CAC0192 KEGG:ns NR:ns ## COG: CAC0192 COG4948 # Protein_GI_number: 15893485 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Clostridium acetobutylicum # 13 352 13 354 358 208 34.0 1e-53 MQITAITAHPRPIKLKTPFKLALGELSAITTLIIKIETDTGMTGFGEASPYAPVNGETNE TEQAALPTFAAALVGTDPRNLEQVHARMDAVMAGHTALKCGIDVACSDILGKSAGMPLWQ LFGGDCNTITTDITIPIGSAEEMAATAQQYVHAGFTALKLKAGNDELADIAAIKAVSAAV GPNVSIKVDANQAWTAAQTRRIMAQLQLPNLIALEQPLPDWQLMEAPALRQELAVPLMLD ESVHNAHDASAAVKLGATDLINIKLAKSGGFAGANAINAIAAAAGIGCMVGCNAETRLGT AASAHFIAAHANVRYGDVDSFMLLEETDWLTGGFEADGETLTLSDRPGLGVEVHL >gi|225002467|gb|ACIZ01000112.1| GENE 158 152805 - 153539 565 244 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239830964|ref|ZP_04679293.1| Ribosomal protein L11 methyltransferase [Ochrobactrum intermedium LMG 3301] # 4 242 5 242 245 222 45 1e-56 MTAIYDDPDFFKAYSQMDRSKKGLAGAGEWHELKTVLPDFTGKRVLDLGCGYGWHCRYAA EHGAKTVLGIDTSAKMLAEAATMTHDQPIVYQQMDMQAIDQLPGSFDVILSSLAIHYIAD YAGLVQKISAKLPVDGQFIMSVEHPVFTAQGDETWIKDDRGHNLYWPVDRYFAEGQRETE FLDHRIQKYHRTLTTYLNTLLDHHLRLDRVIEPTPTAAMVRDIPGMADELRRPMMLIVAT TKTA >gi|225002467|gb|ACIZ01000112.1| GENE 159 153644 - 154396 612 250 aa, chain + ## HITS:1 COG:FN0218 KEGG:ns NR:ns ## COG: FN0218 COG2071 # Protein_GI_number: 19703563 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Fusobacterium nucleatum # 33 229 35 229 289 165 47.0 1e-40 MKFKIGIPTDELIEINPIMPNNHPAYAPHDVKEAFIKLGAIPLIIAFPDDVSKVDQLAQD YVQLIDGLMLPGGPDVDPTFYGEEPHPKIGMTLYQKDRFEIALIKAALAADKPIFGICRG IQIMNVAMGGTLYQDLESQYPELKIQHPQATLGQFATHHVELTAGSKLAKLYGQSTIKVN SRHHQAVKAVGKGLKVTAVAPDGVIEGMESTDTDLFLGVQWHPENMWQQEDPQQLVVFQD FLDRIAAHRK >gi|225002467|gb|ACIZ01000112.1| GENE 160 154483 - 155358 405 291 aa, chain - ## HITS:1 COG:no KEGG:LC705_00525 NR:ns ## KEGG: LC705_00525 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 291 1 291 291 572 100.0 1e-162 MPPYANLSPQMIANRINKSADSLGVPRQDLQLLFRLQELLRQISESKYRSDFVFKGGFEI MTLIGAPLRTTTDLDVTLNHYSLNADELKKIFFDIFEHAEGPIHFEITQVKSEMNENKYP GFRLGVIGTMGKTRSKLNIDISTGDVIYPNPIKFVHTNFIDAHDKITINAFPQEQIMADK LITIYQKGPNNTRAKDFYDIWALSTLISIDLDHQQLIKAFHETAKAKKIGNLTLSQGEAI LEELKTAPGMALSWKSYQQTKKFAQDIRFTRVLDSARKQLTQIFSAPQTEK >gi|225002467|gb|ACIZ01000112.1| GENE 161 155358 - 155954 463 198 aa, chain - ## HITS:1 COG:no KEGG:LC705_00526 NR:ns ## KEGG: LC705_00526 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 198 1 198 198 401 100.0 1e-111 MGVASGLNALLQEHHTFVSGTAKRFGVSSSTLNQAVKNGKILREARGVYVENGYTWDDFE VLSQRYTKGVFALDTALFLHGLTDQLPDRFIMAFPHGYSNPRLAEHGIVPIYYVPDRYFP GITSVQTPNMGLVPAYSVERTLLEFWERSDVAPYSRKEAINNYMYEYGNNVNSYKRLKKL KEQLYPQSDIFKLLEVLA >gi|225002467|gb|ACIZ01000112.1| GENE 162 156031 - 156180 90 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIIGEMKEFLKIAFRISSKHLVKKLALLLTTLLNLDTSPLASYSKSKSL >gi|225002467|gb|ACIZ01000112.1| GENE 163 156261 - 157604 1179 447 aa, chain + ## HITS:1 COG:MA4216 KEGG:ns NR:ns ## COG: MA4216 COG0174 # Protein_GI_number: 20093006 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Methanosarcina acetivorans str.C2A # 3 438 10 442 447 237 32.0 3e-62 MNEEAVIEQLTEKQTELIEFLYVDYNGLTRGKVIPLASLKAKLADGIGLTKATLNVSERD TILPVQDMTPIGELRLVGDPASAHVLPYMPQVATLMGDIYNLDKTPYASDPRSILKRVVE QLADAGFSVKMTYENEFELFTGDKDHREPAMPRVAFSTESMDFAYPFILKAINQLQQVGI MPNAYYPEGGIGQHELSMLPQDPVTAADNEVIYKRIIKNTAKDFDLYASFAPKPLVDSAG SGAHIHFSLWQDQKDAFFDDDAPMHLSQTGQYFVGGILKHIQGLLALTCPSVNSYQRLAP GHWSSAYATYGQDNREAAVRIPSTAWSDPASSMNIELKASDATANPYLAFAGLLAAGLDG ITHQLQPGDYCDVDPASLSDAERAAKGIRRLPRTLGQAVDAFVADPLFQDLFGAQLVDAY AKIKREDDHYYGKLELEKIAALHRELY >gi|225002467|gb|ACIZ01000112.1| GENE 164 157814 - 158956 1056 380 aa, chain + ## HITS:1 COG:MT1928 KEGG:ns NR:ns ## COG: MT1928 COG2159 # Protein_GI_number: 15841349 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase of the TIM-barrel fold # Organism: Mycobacterium tuberculosis CDC1551 # 3 336 8 339 378 120 30.0 4e-27 MDDLTEFVDQVPLLDHHCHFLINGKVPDRDERLAQVSTEADNDYPLADTKNRLAYHGFLA LAKQFALDAKHPLAAMNDPGYATYNQRIFSYYHFQELLIDTGFVPDDAILDLDETAKLTG VPVKAIYRLETHAEALMLQHDNFAAWWQALRDDIRQAKERGFVGFKSIAAYRVGLHIEPV NLMEAAAGFDTWKQSGETRLTSKPLIDYILYHAAPLIIAQDLPLQFHVGYGDADTDMYLG NPLLMRDFLNAFAKKGLKVVLLHCYPYQREAGYLASVFPNLYFDISLLDNLGLSGVRRVF NEAVELAPYTRILFASDASTYPEMYGLAAQQFKQALIAHFSPLPFVDLAQKKAWINAICW ETAAKLYHQEDEFKPTDPHR >gi|225002467|gb|ACIZ01000112.1| GENE 165 159112 - 160347 1107 411 aa, chain + ## HITS:1 COG:CAC0852 KEGG:ns NR:ns ## COG: CAC0852 COG0531 # Protein_GI_number: 15894139 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Clostridium acetobutylicum # 2 395 46 438 462 195 33.0 1e-49 MPIAFLLGGIGVLFVAISFVELGKRIPGDGSAYAYNAKALGEKAGFISGWLLVLTYVTFV FSSGAIVGNFANVFLSHLGIHLPVNLYNIIVLLLGGWLSHKGIEFSTRLTLVLELLAALV LSVLTVVIIFSGGRSGNSVQPLIPQPHMATGLGMGMVFALMSFAGFEGSATIAPRATNPR KAISIALLGAVSFAAIFYFLVSYAEVIGFGSAHIGDLAKSTAPMNFLATHYLGTNAAIFM DFAAMVSYFACYFGALNAGAFMLEALGKSGYLHPWLAEETGDKQTPTHALDSITGLALIV YVIFAIGLGVSASDMYNWFGTIGMLGLLTVYVLVNIGAIVYFRKDKGRSMFKHVLAPVIG ILVLIYPIYTSLWPIPAFPMNTFPYIAIAWFLIGLWVAAKRRKVTTRLEDF >gi|225002467|gb|ACIZ01000112.1| GENE 166 160457 - 160882 359 141 aa, chain - ## HITS:1 COG:CAP0107 KEGG:ns NR:ns ## COG: CAP0107 COG0789 # Protein_GI_number: 15004810 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 5 124 3 122 152 113 45.0 9e-26 MSVSYSIGEVAAITHLSVPTIRYYDKEGLIPDLKKDPAGVRCFDDHNLGALEMINCLKTA GMSIKDIRTFMQWTLEGDTTLEKRLDFFNHLHESVETQMQQLRQTLNTIEYKQHYYRQAV ADGTEKYVKTGTAHEKVAGTD >gi|225002467|gb|ACIZ01000112.1| GENE 167 161060 - 161926 825 288 aa, chain + ## HITS:1 COG:Cgl1021 KEGG:ns NR:ns ## COG: Cgl1021 COG0656 # Protein_GI_number: 19552271 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Corynebacterium glutamicum # 20 286 3 267 267 314 57.0 1e-85 MLEETYLLANGVKIPKIGFGTWMIADNAAAATAVHEAIDAGYRHIDTAEAYGNEVGVGEG VRAAGIARQDIFVNTKLAAEIKEHDAAVKAIDESLQKLNLDYIDMMIIHAPKPWAKYDEP DRYFEGNLEAWRALEEAYKAGKLRAIGVSNFDPTDLRNLLDHAEIAPMVDQVLAHITQTP FKTIEFAKQHHILVEAYSPFGHGEMFKNQAIKQMAEKYHVSVAQLGMRYLLQLGLLPLPK TVKPEHMKANAEVDFEINETDMSTLEHMKPLTDYGQYQSFPVYSDRLS >gi|225002467|gb|ACIZ01000112.1| GENE 168 162106 - 163128 855 340 aa, chain - ## HITS:1 COG:BH0738 KEGG:ns NR:ns ## COG: BH0738 COG0604 # Protein_GI_number: 15613301 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Bacillus halodurans # 1 335 1 336 339 347 50.0 2e-95 MKAIGFTQHLPIQDARSLEDLTLSKPTPTGHDLLVNVRAVSVNPVDTGTRGAGHAQLAQP KVLGWDAVGTVNAVGQDVTRFRVGDRVFYAGSYKRSGSDAEYQLVDERIVGHAPKNLNDA QAAAMPLTSLTAWEALFEKLHISPDATAENRHHTILIINGSGGVGSMATQLAHLAGLQVL ATASRPESQKWVQDHGADHVLNHRKPLPPQLKAAGFKDVDYILNLSHLDEHWSEIATMIR PDGWVAAITENRHGINLQKLTKKRATFAWEWMFSKSWYGYGLDSQGAILDQVAALLDKGT LQCTLTKTLQPLNAANLRQAHALVESGHMIGKIVVAGPWA >gi|225002467|gb|ACIZ01000112.1| GENE 169 163232 - 163576 229 114 aa, chain + ## HITS:1 COG:BH0737 KEGG:ns NR:ns ## COG: BH0737 COG1733 # Protein_GI_number: 15613300 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 6 109 8 110 118 104 44.0 4e-23 MSGELYDCAAGCPVQNTVYIISGKWKSVILYHLFQGDATRFSTLNKAIPSVTERMLALQL AQLEADHVITKKPGDADGRATEYGLTEFGQTLAPVIQAMATWGEAYQARQKATA >gi|225002467|gb|ACIZ01000112.1| GENE 170 163650 - 164402 683 250 aa, chain - ## HITS:1 COG:AGc4899 KEGG:ns NR:ns ## COG: AGc4899 COG0730 # Protein_GI_number: 15889956 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 248 71 318 318 86 28.0 5e-17 MTIETILFLLGMSLLAGILNGIVGMAALTLYPVLLSVGVAPITANATNTIGLLFSGSSAV AASRHELKDHWHQALVITLLNTIGGVFGALILIHSSNAGFKRVVPFIIFLAGVLILMPPK PASSNSSTRQHLRWLGYVLVMLVGIYVGYFGAGAGLLMVAVLSRLVEGPYATYNAMRNLA SLVNNLVTSIMFIFSMPIAWGVLIPVCIGLFAGGFLGPVIVRLIPSRIIKTAVGIFALGL AVFLFYQAYL >gi|225002467|gb|ACIZ01000112.1| GENE 171 164628 - 165767 780 379 aa, chain + ## HITS:1 COG:no KEGG:LC705_00535 NR:ns ## KEGG: LC705_00535 # Name: not_defined # Def: ABC transporter permease # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 379 1 379 379 692 100.0 0 MTKKVYRILIPTLTFFYLWLALGGLDQAAKLWLKLVIIAIGAFLSLLWIRMVRLPPFREV RHLWHQIETLQFMIVSDPKNRLDLLKRRVFADQARHFRGLAVYSYVLSMLSGLILDGLGF VRVSDFVVTIGWTLALMVLITVYIIGAIQAFATHLIRTFVSLQLFAPLALLIGLNITGIM PDFSAFRDYILYYLLLSITISAVMIVMVPNYQLRVLTNYIPAINATSTVIIFLLAEFGNT AMAGIAHQISQGLDLSPTLTASLFGPKMIAAIRELLTLVSIVFLISGNVISAVMTHYRVK SENQLKQVLADITLPISSTDYQRLRSIVYHGLAYNALLIIGRQDLYQAVCTYERQHGLEP PAEEATQSKRRWFEWPKRH >gi|225002467|gb|ACIZ01000112.1| GENE 172 165893 - 166627 817 244 aa, chain + ## HITS:1 COG:MA1106 KEGG:ns NR:ns ## COG: MA1106 COG1131 # Protein_GI_number: 20089975 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Methanosarcina acetivorans str.C2A # 11 236 10 229 235 174 39.0 2e-43 MKQLEIAHLDKAFDQQVLFKDANYTFKQGKIYGLLGRNGSGKSTLFNMIVRNLPHDHGTI AIDADDGQGLITDYADTSVGMVYTQPHLPAFMTGVEFVDYFMAINRQRLEQTHTSVKAAD FFSLAGLSQADANKLLRDYSEGMRNKLQIVVSLMLKPPVLLLDEPLTTVDVVAAHEMQQM IVAMKVDSVVVFSTHIMQLAQAICDAVVLLHDKKLSELEGLDIHSQEFEEAVIARLSDEV QADA >gi|225002467|gb|ACIZ01000112.1| GENE 173 166620 - 168236 1305 538 aa, chain + ## HITS:1 COG:no KEGG:LC705_00537 NR:ns ## KEGG: LC705_00537 # Name: not_defined # Def: ABC transporter ATPase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 538 1 538 538 910 100.0 0 MRDAWRYYWFQAQVNATTMVNGFIYFLRRFPFLGKKIPTKWYRPSALKTLMAIAVNFFTI LLKPVTTLLLIGLAFLVGSAYHDYVHPLATDLSLRVMIAVLVYLVGFLMFRGLVFRNLPL SLKSVKLGDYFALDRPALVRGLMLMDQISGVVLGPLLPMFALALLTQHMWLFLVGLPIAI FGWLWPSFIPRLLWAHWRLGLLVQIGYWLSLLGLPIGLVVTGKLAAFTVGVFSPLGFLIG WAGVVLIGWYIYRFPNDNSLIMASIQDAVRTLNLVASAKKQQLLAAGTAMQKKLTLDTTV ALKSENRSGSNYLNALLFARYRRQLWKKLRTRLFWVIGLGGGLLIALKLFAVHNLGDLTP IYGGIFFLMYLTSLGGQIVQLLFVNCDAAMLYYPFYRQPKTILAGFFYRFWHIVQYNAVT GFTVFLLIFALQLIAPVADQVNFYLVLLLEICGLMLFFSFHDLFIYYLLQPFTDDMDVVS PLYRFLSFGMYWVAWLFTQIHFYGYGYAILIGTVTLLYVGIGTAVIYRVAPKTFRIRY >gi|225002467|gb|ACIZ01000112.1| GENE 174 168443 - 169123 615 226 aa, chain + ## HITS:1 COG:BH1580 KEGG:ns NR:ns ## COG: BH1580 COG0745 # Protein_GI_number: 15614143 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 2 225 4 234 238 159 39.0 5e-39 MQTKVLAVDDDTAILAMLKRYFAWRLPEFRLLTADAGQAALSQLAQQPDLILLDVNLPDI DGFTLTSRIRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRR AHQPDKQAQIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYE KIWGYDAQGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGYKWQN >gi|225002467|gb|ACIZ01000112.1| GENE 175 169111 - 170235 897 374 aa, chain + ## HITS:1 COG:CAC0317 KEGG:ns NR:ns ## COG: CAC0317 COG0642 # Protein_GI_number: 15893609 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 93 351 213 480 498 82 23.0 1e-15 MAKLKAHFMKLSIKKALLQMILLGTIVAGIMMLLFLQVWHLLMFHLTTALATHWFLGGVG LYFGGAIIGSFAVLYAVMNAMARMVYRLKFAPPLAQLKAGVAHIQAQDLDFELHAKTTDE LGQLVGAFEAMRQALRQALEEAWQLVEDQKQVNAAFAHDLRTPLTVLQGNLELLTMADKD EQPDQALLAEMHQQLDRMTAFIQTMSHLSALQNRQLTGEAMTPAALEQQLKEEASKLVPA TKTVTWKVENQLTTNESLAIAPDVVLEVFDNQLTNACRFAAEQVAIHLTATANGLTIKVD NDGPPLTPGEQAKAKLPYFSNDRQAQHLGVGMYICTQLCAAHRGHFTIANQPDTQGVSTI AEFGFLTPASSSTD >gi|225002467|gb|ACIZ01000112.1| GENE 176 170427 - 171326 761 299 aa, chain + ## HITS:1 COG:CC3566 KEGG:ns NR:ns ## COG: CC3566 COG1131 # Protein_GI_number: 16127796 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Caulobacter vibrioides # 6 247 4 246 294 196 45.0 4e-50 MTTIQIEQLVKQYRGRQQPALDHVSLNIQSGMYGLLGKNGAGKSTLMKILTTLEQPTSGK VLVDGTPLKDARSIRRKIGYLPQQFGFYPTMKVIDAMTYLAILAEVPAREQKRRIERLLA AVHLTAQAKTKVKALSGGMLQRLGIAQALVNEPRVLIVDEPTAGLDPEERIRFRNLLADF ANERLVLLSTHIVSDVEATTNRIGILDHGRLVFNGTTDELIDAAAGHVFVGDLPVAQLKQ FKTQYQISEQTAHGQHIRVRFLARTPLATWQSVAPTLEEAYLYLQTQHHQALVKTVSGV >gi|225002467|gb|ACIZ01000112.1| GENE 177 171339 - 172466 793 375 aa, chain + ## HITS:1 COG:no KEGG:LC705_00541 NR:ns ## KEGG: LC705_00541 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 375 1 375 375 673 100.0 0 MKLLWMEFKRQTRSLTFVIYTFLVVAFIVMNVWPLLSRNLTTLPKSPASYENITATDYQT LKTNSLDQLHYDYRHNLYTTYPLGFAKQVTLRAADQAKVRQLMTEAEDADTRAPLVKTLA KVDRLLGGQSAYSSQNIQNFAYRRMTKAEVVADQQLIRQRDRVTGAFARLFADIAGIMMG ILPTIVAIAFCTADRRHHALAVIQAKAMTTPRLLLTRYVASLGSLFAPVIAIAIALTIQV AVLYQGMSLDYTAIVKMAFIWVLPTLMVSSAVGYLSAAIFGNFIGFGIQIGWWLATMMAG ARRVSGNYGWLLIPRHNSLHNGAYYYAQLNQLLQNRLGYALLALGLMALTAWILAAQRGG KLHALKFRSLRPIRN >gi|225002467|gb|ACIZ01000112.1| GENE 178 172426 - 173055 583 209 aa, chain + ## HITS:1 COG:no KEGG:LC705_00542 NR:ns ## KEGG: LC705_00542 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 209 1 209 209 352 100.0 4e-96 MHSSLGRFVRLEIKTNVLKTSLIAVLGWGLIPIVFTLTPQSLAQAAMPTELWMPLLAIFC FGSLFLPEQTTGVAAVINSKSIQLWTVYAVRFAWYFGVLAVLNVTLLGLYQIQGTTLAAG VLLGNASVKSLFIGSITLGSYCCSQSLAVAYLIPTVYFALCIGSNQLGALNLLTLMRQRP LSDNWLQLGVAAFLMIISFLLARRRLVNS >gi|225002467|gb|ACIZ01000112.1| GENE 179 173340 - 175874 2527 844 aa, chain + ## HITS:1 COG:L102360 KEGG:ns NR:ns ## COG: L102360 COG0308 # Protein_GI_number: 15672287 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Lactococcus lactis # 9 841 8 841 846 855 50.0 0 MTVATHFYQLFQPEHYNLYLDINRETKKISGKTTITGDAKQTEIAVHQKYLTVSAVQADG KDVPFTVDDPAEAVRITLPQAGKVTLTLTYTAPLTDTMMGIYPSYYEVDGVKKQIIGTQF ETTAARQAFPSVDEPEAKATFDLAIKFDEHPGETIISNMPEVREENGVHYFDTTVRMSTY LIAFAFGELQNKQTTTKSGVKIGVFATKAHQPNELDFALDIAKRSIEFYEDFYQTPYPLP HSWQLALPDFSAGAMENWGLVTYREALLTLDPDNTSLETKQRVATVIAHELAHQWFGDLV TMKWWDDLWLNESFANMMEYVAVDALQPDWHIWETFQTLEVPMALQRDATDGVQSVHVQV EDPAEIDSLFDSAIVYAKGARMLVMVRSLIGDDALRAGLKAYFEAHYFGNAAGADLWAAL GKAAKLDVGTIMQSWLEQPGYPVVTAAVVDGKLTLSQQQFFIGAGKDAGRQWQIPLNSNY AAAPQIFADKQVTLGDYTQLREASGQPFRVNVGNNSHFIVKYDATLLADILAHLDQLNAI DQRQVLQDLRLLAEGRQNAYADIVPLLSRFAQSHSAIVINALYRVANDLKQFVNPDSAEE TQLKTFFNQLSADQFKRLGWTPKAGESNDDQLTRPYVLSMALYAKNKDAIAQGHDLFTAN KDHLLQLPADVRMFVLQNEVKNFGSATLFDQLLTAYKQTTDSSYKADILAAVTSTPDAEL IAKIVDQFENADTIKPQDLRSWFRGVLSNHAGEQAAWDWVRNEWAWLEKTVGGDMEFTTY ITVIAGIFRTTQRLDEFKKFFEPKLPTPGLTREITMDTSVIASRVDLIQAEQQAVHEAVA KAVK >gi|225002467|gb|ACIZ01000112.1| GENE 180 176136 - 177584 1166 482 aa, chain + ## HITS:1 COG:L119780 KEGG:ns NR:ns ## COG: L119780 COG0531 # Protein_GI_number: 15673092 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 3 473 2 471 488 574 63.0 1e-163 MADTKKQLRWYNVALIAFVSVWGLGNVFNNYAQQGLSVVTSWILIMLIYFVPYALIVGQL GSTFKDQAGGVSSWIKETGSVRLAYYAAWTYWVVHIPYLAQKPQAILIALSWLFKGNGDF VNTVSSMTVSLICLALFLLFLWLSSRGLTTLNRIGSMAGTAMFLMSILFIILAVTAPLMV KGVHVATPNMGDIHTYLPKFDLNYFTTISMLVFAVGGAEKISPYVNNTKHASKEFPLGML VLAGMVAFCALLGSFGMGMLFNSHNIPTDLMANGPYTAFAMLGKYYHVGGLFVILYSIAN ALASISALAFSIDAPLKILLSDADPHFIPKKLRRINRKGTPINGYWMTGILVSLLIIIPA FGIGNMNELYKWLLNLNSVVMPLRYLWVFLAYYLLNQHLEKFQADYMLVKNKRLGMLIGG WCFFFTAFACLLGMLPKISYLNDPGTWWFQMGLNIITPVILLALGLILPVIARLHENDLD AQ Prediction of potential genes in microbial genomes Time: Wed May 25 20:25:02 2011 Seq name: gi|225002466|gb|ACIZ01000113.1| Lactobacillus rhamnosus LMS2-1 contig00146, whole genome shotgun sequence Length of sequence - 26723 bp Number of predicted genes - 26, with homology - 24 Number of transcription units - 14, operones - 7 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 85 - 1419 1158 ## COG2211 Na+/melibiose symporter and related transporters - Prom 1479 - 1538 3.8 - Term 1485 - 1528 -0.6 2 2 Tu 1 . - CDS 1576 - 2076 540 ## COG3477 Predicted periplasmic/secreted protein + Prom 2305 - 2364 5.9 3 3 Op 1 . + CDS 2564 - 3391 654 ## COG1897 Homoserine trans-succinylase 4 3 Op 2 . + CDS 3404 - 4333 1010 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 + Term 4366 - 4414 14.0 + TRNA 4479 - 4550 42.3 # Arg TCG 0 0 + Prom 4479 - 4538 77.4 5 4 Tu 1 . + CDS 4780 - 5553 396 ## LC705_00550 hypothetical protein + Term 5589 - 5647 10.2 - Term 5578 - 5634 15.2 6 5 Op 1 . - CDS 5841 - 6041 195 ## LC705_00551 hypothetical protein 7 5 Op 2 . - CDS 6091 - 7227 966 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 8 5 Op 3 9/0.000 - CDS 7322 - 7756 434 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 9 5 Op 4 31/0.000 - CDS 7757 - 8134 285 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 10 5 Op 5 . - CDS 8161 - 8874 473 ## COG0765 ABC-type amino acid transport system, permease component 11 6 Tu 1 . + CDS 9607 - 10515 455 ## LC705_00555 hypothetical protein + Term 10543 - 10613 24.5 - Term 10538 - 10592 19.3 12 7 Op 1 . - CDS 10682 - 12073 1141 ## COG1114 Branched-chain amino acid permeases 13 7 Op 2 . - CDS 11983 - 12159 80 ## + Prom 12874 - 12933 5.4 14 8 Op 1 . + CDS 12984 - 13652 571 ## LC705_00557 hypothetical protein + Term 13670 - 13703 5.2 15 8 Op 2 . + CDS 13717 - 14541 686 ## LC705_00558 cell surface protein + Term 14633 - 14682 0.1 16 9 Op 1 . + CDS 14720 - 15076 268 ## LC705_00559 hypothetical protein 17 9 Op 2 . + CDS 15073 - 17148 979 ## LC705_00560 extracellular protein + Prom 17150 - 17209 2.4 18 9 Op 3 . + CDS 17244 - 17363 123 ## + Term 17429 - 17481 14.0 + Prom 17708 - 17767 8.4 19 10 Tu 1 . + CDS 17980 - 18696 705 ## LC705_00562 hypothetical protein + Term 18713 - 18752 1.2 20 11 Op 1 . + CDS 18811 - 19185 257 ## LC705_00563 hypothetical protein 21 11 Op 2 . + CDS 19166 - 19855 471 ## LC705_00564 hypothetical protein + Prom 20022 - 20081 2.9 22 11 Op 3 . + CDS 20125 - 22164 1610 ## LC705_00567 hypothetical protein + Term 22194 - 22248 20.1 - Term 22180 - 22234 20.1 23 12 Tu 1 . - CDS 22272 - 23246 727 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 23275 - 23334 3.8 - Term 23360 - 23402 9.3 24 13 Op 1 . - CDS 23411 - 25129 1263 ## LGG_00590 hypothetical protein 25 13 Op 2 . - CDS 25113 - 25955 278 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 - Prom 26040 - 26099 4.7 - Term 26066 - 26099 1.0 26 14 Tu 1 . - CDS 26165 - 26713 417 ## COG4720 Predicted membrane protein Predicted protein(s) >gi|225002466|gb|ACIZ01000113.1| GENE 1 85 - 1419 1158 444 aa, chain - ## HITS:1 COG:CAC3422 KEGG:ns NR:ns ## COG: CAC3422 COG2211 # Protein_GI_number: 15896663 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Clostridium acetobutylicum # 14 442 10 436 445 253 40.0 7e-67 MSKPSTSWQTKWPERISYGLSDAADNLVFQVMTSYLLFFYTDIYGLQAGAVALLFLIARI ADVFESPIVGLMIDHTRSRFGKSRPFFLWYALPYAIFAVLTFVTPGWSANGKLVWAYVTY LMLGFLYTAVNLPITSVLPTLTQQPQELTLLGVIRQFFGSSVQIIVAVFTLPLVAFFGRG NDQRGFLLTMTLFAGISLVLILNTFIHIRERFTQEKIAHQPLKVVAKIAVHNRPWLLLSL IIFTYWLLTAIKNQTTVYYFKYTLHDQGLVSWANSFTFSSLIGVLLILIIAGRYGNKHTM RLGMIIGLIGQLVMAGGVYARNLWILFPGILINSVGQGMIVGLVSIMLADTIRYGVTLGA QAEGLFASSNDFGVNLGLGIGGLITAGLFDLTGYVPNTSQNAATLGMINLNYVWLPLLLY GLLLLLIHFYPEKQMLAAIEKHQA >gi|225002466|gb|ACIZ01000113.1| GENE 2 1576 - 2076 540 166 aa, chain - ## HITS:1 COG:SA0175 KEGG:ns NR:ns ## COG: SA0175 COG3477 # Protein_GI_number: 15925885 # Func_class: S Function unknown # Function: Predicted periplasmic/secreted protein # Organism: Staphylococcus aureus N315 # 16 156 13 153 164 146 48.0 2e-35 MRTHTSPSIVKLAAVGAVAGLVSGLVKLGWENILPPRTPERDATNPPQTFLQQHGLTPAE THATYTYSGHQIPWVSLLVHFGFSSSLGALYAVAGHYVPLFKLGYGSMWGLGVWAGAHLW AMPALKIVPAAKDQPAEEHLSEAVGHMVWNTVNQIVISDMLREKHA >gi|225002466|gb|ACIZ01000113.1| GENE 3 2564 - 3391 654 275 aa, chain + ## HITS:1 COG:BH2280 KEGG:ns NR:ns ## COG: BH2280 COG1897 # Protein_GI_number: 15614843 # Func_class: E Amino acid transport and metabolism # Function: Homoserine trans-succinylase # Organism: Bacillus halodurans # 5 262 35 291 303 148 32.0 1e-35 MTEAPLKIGILNVMHDKADTKTRLQHVLSHTDIPVELHFYYPMTHYAGREVPEAVSSILE PLDIHEAATMDGFIITGSPIETLEFDQVHYIAEVRTLLKTLGQHVPNQMYLCWGGMVALN YFFGVSKLILPHKLFGVYPQTILEPHPFLKGLKEGFKSPHARYAEMDVRDIRNDPRLTIN ATTTKGKLFMVTEPTDTQTFIFSHIEYDRWGLDSEYKREVAAHPEISYKRAKHYYHHKND YDHPKFNWKKTQRTIFDNWVRHIADHRNENRSPII >gi|225002466|gb|ACIZ01000113.1| GENE 4 3404 - 4333 1010 309 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 6 308 5 307 308 393 64 1e-109 MVTAADNITGLIGNTPLLKLNRVVPEGAADVYVKLEFFNPGGSVKDRIALAMIEDAEYKG VLKPGGTIVEPTSGNTGIGLALVAAAKGYHLIITMPETMSVERRALMRGYGAELILTPGA DGMPGAIKKAEALSKENGYFLPMQFQNPANPDVHERTTGQEIIRSFDGGTPDAFVAGVGT GGTLTGVGRALRKINPDVKIYALEAAESPMLKEGHGGKHKIQGISAGFIPDVLDTNLYQD IIEVTSDQAIDMARHVSHEEGFLPGISAGANIFGAIEIAKKLGKGKSVATVAPDNGERYL STDLFKFDD >gi|225002466|gb|ACIZ01000113.1| GENE 5 4780 - 5553 396 257 aa, chain + ## HITS:1 COG:no KEGG:LC705_00550 NR:ns ## KEGG: LC705_00550 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 257 1 257 257 523 100.0 1e-147 MQPVLLATVHHPNVSLPQLKRVLAVVSDSFSAAYLTVSTITDREITKLLQTFPSVHVRII EPRGAADARRRVLDFGLRQVRYRASFFYCDFDKVVTGIEANVSEFKTFIAQLRVDDGYQI IGRSSENMRGYPATWRETEAITNKAASEVFALPDLDITAGCCAVSQMAARYILANSDGLL TDTEWPLICKAAGLTITAKRVNFLPYVPALNAGRDDDNWHGYTSRLRLALQALQSLETDG TADLNQPVSIGWPYNED >gi|225002466|gb|ACIZ01000113.1| GENE 6 5841 - 6041 195 66 aa, chain - ## HITS:1 COG:no KEGG:LC705_00551 NR:ns ## KEGG: LC705_00551 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 66 1 66 66 93 100.0 2e-18 MKQAQSLSLKYWLIIFCTIIILSPIAYMISTWVGPSATYIRLIAIFLIAWLAVKIAKYFT TNKETK >gi|225002466|gb|ACIZ01000113.1| GENE 7 6091 - 7227 966 378 aa, chain - ## HITS:1 COG:HP0106 KEGG:ns NR:ns ## COG: HP0106 COG0626 # Protein_GI_number: 15644736 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Helicobacter pylori 26695 # 3 373 2 376 380 346 45.0 3e-95 MTQFNTKLVHGPQLNVDQAGAIVPPVYQSAMFRFAPDGQETHWDYARSGNPTREYLERQI ATLENGDAGFAFSSGVAAIATVLAIFPDHSHFIIGDSLYSGTDRLINQYFSQHGLTFTPV DTRDLAAVEAAIRPETKAIFFETFSNPLLKVSSVKAISALAQAHDLLTIVDNTFLTPYYQ RPLDLGADIVLHSATKYLGGHGDLIAGLIVSAHPDISEKLAFLQNTIGAILSPLDCSLVT RGIATLSVRLDRETANAQAIAEFLAQHPDVAHVYYPGLKNDPGYALAQKETTGASGLLTI KLADNIDPLKFVNSTKIFDFADSLGTISSLVKLPWFKLPENKRADSGLTPQHVRIAIGLE DQQDLIDDLAQALVAAEK >gi|225002466|gb|ACIZ01000113.1| GENE 8 7322 - 7756 434 144 aa, chain - ## HITS:1 COG:BMEII0601 KEGG:ns NR:ns ## COG: BMEII0601 COG0834 # Protein_GI_number: 17988946 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Brucella melitensis # 3 142 120 256 257 80 37.0 1e-15 MYSRYALITRSDNTTIKSLADIKGKTFVEGTGTPNAALAKKYGAKITPSGDFTVSLSLVK EKRADGTINASAAWYAFAKNNSTAGLKSQTLKDSVVKPDEVAGMVSKKSPKLQAALSKGI QELRKDGTLKKLSQKYFGTDLTTK >gi|225002466|gb|ACIZ01000113.1| GENE 9 7757 - 8134 285 125 aa, chain - ## HITS:1 COG:YPO1846 KEGG:ns NR:ns ## COG: YPO1846 COG0834 # Protein_GI_number: 16122097 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Yersinia pestis # 35 125 32 123 266 94 46.0 4e-20 MLKKKLWFLLPLVALVTFTLTACTSASSDTSKNSDVTAELINKNELTIGLEGTYAPFSYR KDGKLEGFEVELGKALAKKIGVKAKFVPTQWDSLIAGLGSQKFDLVLNDISETPARKKVY NFTTP >gi|225002466|gb|ACIZ01000113.1| GENE 10 8161 - 8874 473 237 aa, chain - ## HITS:1 COG:SMc03893 KEGG:ns NR:ns ## COG: SMc03893 COG0765 # Protein_GI_number: 15967029 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Sinorhizobium meliloti # 3 228 6 218 226 180 46.0 2e-45 MWKIITDAVPQMIAAGIKYTIPIALVSFAIGLIIALVTALTRISVRKGILIRIAKGIAVF YVWLFRSTPLLVQLFIVFFGLPSLIIPGIFPHGIKLDPVAAGIITFSLNTGAYCAETIRA SLLSIDSGQWEAAYAIGLPRRLVLREIIIPQALRTAIPPLSNSFISLIKDTSLAASITIV EMFQVSQQIAAENYQPLLMYSIVALLYAIVCTFLAWGQRHLEKFTSRYNANAQTTQL >gi|225002466|gb|ACIZ01000113.1| GENE 11 9607 - 10515 455 302 aa, chain + ## HITS:1 COG:no KEGG:LC705_00555 NR:ns ## KEGG: LC705_00555 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 302 1 302 302 412 100.0 1e-114 MKKAWAFGLAAMLGLGVSTVMADQASAFAASAPPTAADTTTQKIDTDQKNTDDQTCVQDD ISSEANQTPVITVAETSESVINDSSASNSGSQQEEQASESSQVSENSSATSSRDANATTE AGSKKTDAKSEASSSSVPTIKTEQESNKGSNQPKTKHTAEEQAMVVAAQAATHDNIHVKM DQGVQAVTQGTDDFTISDKPHNTLERLWQALIESVAHRQQCPISFENRLIMTTPTTNLTF IKASLTPVKKYIKANFSDDMLKRMLQKDFLKPLQITFKDVIKTLNQIMLVLVIMPDSSAS QE >gi|225002466|gb|ACIZ01000113.1| GENE 12 10682 - 12073 1141 463 aa, chain - ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 5 451 2 447 449 320 41.0 3e-87 MELSEKKLKTRDYVVIASLLFGLFFGAGNLIFPLHLGQLAGANWFPAMLGFLVTAVALPL LGVLAIAATHAEGVYDIGRPLGRFFALAFMVLIHATIGPMFGTPRTATVSFTTGVLPMLP KAWQQGGLLVFSALFFGAAFFLSYKERKITTAVGKVLNPVFLLLLFFVFFIGFLHPMGNP AAQTVTAAYKNGGSFMSGFLQGYNTMDALAALAFGVTVVTAVRGLGLKNDDHVSKATAKA GVMATSWIALIYVALIVLGSMSLAHFKLSAEGGTAFNQVVTFYFGTAGHAVLATLLTLTC LTTAVGLVAAFAQDFHRHFPKVSYQVWLGLTSFLSFLTANFGLEQIIAWSVPMLMFLYPF SMVLILLSVFGKAFHHDPLVYRIVVAFTIVPAVLDMFAAFPAVVSQSSLGLALHSFQLHF LPFSAMGLGWLVPAGVGLVLGLVAHAVKVRRAVAATHLEAEQN >gi|225002466|gb|ACIZ01000113.1| GENE 13 11983 - 12159 80 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MESDISHIKPMTTALNVTQLKTFLLEAVQWNYLKKNSKPVIMSSLHRFCLAFSLAPAI >gi|225002466|gb|ACIZ01000113.1| GENE 14 12984 - 13652 571 222 aa, chain + ## HITS:1 COG:no KEGG:LC705_00557 NR:ns ## KEGG: LC705_00557 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 222 1 222 222 337 100.0 2e-91 MKKVNYIAAGISALTLAGMLLPVGQVFAADQTKTSVAEINLKGGELTLDAVPDLNFGEIA IADLAAGQVSPALVDNAVGNGPVKNGTDAMDGNNTGNLSVTDLRGSNAGWTLTAQLGQMK NTAGKLLAGKLKLASTNVQTDNTSVNAINPGGTLPEIPIAGSAVTIWKAEAATATDNGQG QGKNTAAITENSGTTLILDKNPTATAGQYQAAITWTLSDAPK >gi|225002466|gb|ACIZ01000113.1| GENE 15 13717 - 14541 686 274 aa, chain + ## HITS:1 COG:no KEGG:LC705_00558 NR:ns ## KEGG: LC705_00558 # Name: not_defined # Def: cell surface protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 274 1 274 340 518 100.0 1e-146 MRKKLLLGLLACLSFLWFGTHQQVHAAEGAGFTISPALPQNQIDQSTYFNLLVKPGETQR LLIYVKNTTKTAKKLKVSPVSAFTQTNGTIGYYPNDHKDDSAEYTFSQLAGEPKTIDLAG DAQVPVTFDVKIPAKGFTGQILGSLYVEDPTVHKSGGGGMAINNKFAMLIGVVLQTSTTE VAPDLNLMAVKPGSQDNRAGVLATIQNTKPRLFGDMTLDGKVYRQGSDKPYLSRTEKGWS FAPNSHFDYALPSKEALSPGTYTLDLTAKAVGKT >gi|225002466|gb|ACIZ01000113.1| GENE 16 14720 - 15076 268 118 aa, chain + ## HITS:1 COG:no KEGG:LC705_00559 NR:ns ## KEGG: LC705_00559 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 118 1 118 118 177 100.0 9e-44 MKQKKTNFLMMLLLLALLMMAGTATQSVHAEVSVAQVELTGEMPAPNPEQPAVPEPGKPG QPEDKGQQPRHLAATTERLPQTGDDVQVWYVVIGVEILIIVLLSALLVLGRSRQGGQK >gi|225002466|gb|ACIZ01000113.1| GENE 17 15073 - 17148 979 691 aa, chain + ## HITS:1 COG:no KEGG:LC705_00560 NR:ns ## KEGG: LC705_00560 # Name: not_defined # Def: extracellular protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 691 1 691 691 1284 100.0 0 MKKKIFIITCLAVMISMVLGPLQMVMSATSRWPSPGLGTQEAYPIPDTGTFTSLNGIFSK IGSGQSQVIDVNTDTVGLEINPDKPNSIGAIWSNQSFVNLDKDFTLDMQVYLGNKNDKGA DGLAFVLTSAKPGTLGNGKSSLGVWGISEKNDAKPDQIALTGIPKSFAIVIDTKKSVNPL TSGLDKHVHYANSIEQYIGSGYPSHASMYNIGAPFWQTELVFDNAIGKPTRYADGLNGRV TNDKWHNLIVSWQKADSGGGTLTYQLKGKANARSITWTEAEIGAIFGTTSTGTSNKELFL GFTSATNTTTDTSEPHLVAIKSLADFNDFKGAVTLKHGDEVVKQDTLLSIGDKLTYHYSI NVENLNGLEWPVSQIELPKGKYFDYLKPDGKPAIAGDKLPVSIKVNGQTIPAEATVQADG NSAVMTSLGSLPKNTNSQLEFSVPAVVKNHTLTSNLLVDDDATGSLTGGTPTAETYNFTN TADQIGKTIKYVLAANPGAVTLKSVPSFVFEKIFQEGSEEATNVNPTVADFIQGIPGQKP FPTTLSELDLSKWLNTLDSKTPSQGATGKILSVTDTRPNKPGWHLQMSLSPFTLADGSYV LGDNGNTSGGKAEMVIAENKDNEAKVTEIARVRDNGNAVTVKNMAPGGSNWSLGTEEMQT QAFMSIQKTPSVRTGQYRSTVTWTLSDAPMP >gi|225002466|gb|ACIZ01000113.1| GENE 18 17244 - 17363 123 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKSSPKFSLLVVSIVLATLAVVSQAPIHVLIASVSHFG >gi|225002466|gb|ACIZ01000113.1| GENE 19 17980 - 18696 705 238 aa, chain + ## HITS:1 COG:no KEGG:LC705_00562 NR:ns ## KEGG: LC705_00562 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 238 1 238 238 407 100.0 1e-112 MKRVNYMAMGLTALSLAGMILPVTNVLAAGEADTPSKKTSVGEVRVGVDPTNPDPKNPDN PDGSKDILSLVKVPDLKFKSVSVEALATGDQTLPLLNNTVTDKPVKNEPAGNAADGNNQG ILNITDYRGTGAGWRLEAQAGELKNETGQTLGGSIVLAGDIKADETDNNPAALATNPELV LAGSSVPIWQAAKDQGQGRNTSLFTSPQNLLKLTKNVKAYAGKYQTAITWTLTNAPGN >gi|225002466|gb|ACIZ01000113.1| GENE 20 18811 - 19185 257 124 aa, chain + ## HITS:1 COG:no KEGG:LC705_00563 NR:ns ## KEGG: LC705_00563 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 124 1 124 124 240 100.0 1e-62 MGFSTWRFWIKLVVLMGFIGLSSVAVYEVQAATSIGEVIVIDDRPQPANPINAPGSDILT PKPLKNDLSRSHKPMPRRLPQTGENRQQGMLPVIGMMLLLINIMGLSFWRGRKDKGDENE KANP >gi|225002466|gb|ACIZ01000113.1| GENE 21 19166 - 19855 471 229 aa, chain + ## HITS:1 COG:no KEGG:LC705_00564 NR:ns ## KEGG: LC705_00564 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 229 1 229 229 395 100.0 1e-109 MKKQILSLTTLLIAAGISTAYPVAAADDLGPKSSVAQLTVDPGNIVLQQVPDLNFGGISV YEIVSGQFTKHALRSNKVNQGPVKNSTNANDGNASGLLQVGDYRGTSAGWTLTAKMDALT DGKGHFLEGYIDLVGTNPTTSNPDLNAVHPAGAQAPRLKFAKDQQTPETVVWQADAASAT STGQGQGNNQVTIGAGTELTLVSSPINVTTQVGRYQAAITWTLANAPQP >gi|225002466|gb|ACIZ01000113.1| GENE 22 20125 - 22164 1610 679 aa, chain + ## HITS:1 COG:no KEGG:LC705_00567 NR:ns ## KEGG: LC705_00567 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 679 1 679 679 1297 100.0 0 MKKCGYLVTWLGLLVSFLMVAPSVSAHAAAGWPSSSGYPAPPSFSDVTGLFEPTQKDSSL IIDSATGSAVGMEINKDAPNQSGAIWSTAPMFDLDKDASYTMYYYLGNKTTIGEGMAFVL AARPAAPKQIDPSSLGIWGVDHLPAGSTSQQIANTALPNSFALYVDTRRNGGDAAGGYDQ YSAYTDYYFGAGYPGQANMYRISNPYWMSWLYFKGDPPFNGVQTGIGRQNTLASTAANGK WHQVKIDWKKDNRGGGTLTYTVTVQKSNGKPYVFSEKVTWTSADIQKYFAQNADDPVPRQ LYLGFTGTTSNYYEPHVVAIGALPEVAKVKGTVALMRGAETVDANTHLKVEDAIHYDYVV DVQATMQAAWPTNGTITMDVPKGQYFDYLKADGTPAQPGDQLPITLTIGSRTVTVQGKVQ SDGNRIVVTQMPSVAAGTAAKLQFSLPARVKHHGLLKSTLFHDKPIGTVSGDGQTYDLKT PAGKDVLEYILDPETGDLTLEKVPSFIFELKDGAGGYRNPNVMDMVNGIPNPDTASPNQL ETGQWLTNQHGLEPANSTGKVLSIKDTRPTKQGWHLMMQLTPFTLVGQPYVLGDHGSQQG GKATLVLADRTATGTDKVATIRDNNNATLVKNMAAGGTDWTLGAQTGNIAAYLGIEQTAT AKAGQYQATATWLLSNAPQ >gi|225002466|gb|ACIZ01000113.1| GENE 23 22272 - 23246 727 324 aa, chain - ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 4 299 2 297 306 197 38.0 2e-50 MSRTETHLVNQNDQKLKGVIFAVVGAIFWGASGIFTQMLFTNAGVRPLWLVGIRLFFAGL LLVIWSSLKDLRQLGTIWKNRHDAMLLILFAFLGMVPSQLTYFLAISAGNAATATILQFL GPVFILLYVAFATRQMPRRIDFVSITLALIGTYLLVTRGRLTSLSLAPAAVFWGIMAGVS QALYTLLPRTLLAKYDARAVTGWSMLLGSLPFLPQYVLRRNPVLTLPNLGAIAFVVIFGT MFAYLLVLGSLHYISPVATGMLSAFEPLTATTLAVTRLHIAFGPAEWLGGFLIVLNTLLQ ALPFNKLQHVQRRLIRQLSRKKSL >gi|225002466|gb|ACIZ01000113.1| GENE 24 23411 - 25129 1263 572 aa, chain - ## HITS:1 COG:no KEGG:LGG_00590 NR:ns ## KEGG: LGG_00590 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 572 1 572 572 1010 98.0 0 MKRLNKAQAEPVNTAAMPLPKVFAWLNRFAPALEKRGIQFDQLRLILATKNLLAAREPSG MGSLFSQRKRGKDASLRTGFLWNLLFGVIIGLMMFLPASALTLFTIFFSVQLLTSFLNIL TTYSSLILDPRDRTVFASRGVNDRTLSFARILNVCFYLGITLLAMGIPGIVITGLHFGPL VAVGGLLGLILSGILSLVIALFVYLLVLRYFDGERLRNMLNLVQILLMIGIYVGGQLPNL LPRGMSSVNLSLAPEFSWVYLLAVPAWFAGLPMLFAGQVNLLSIVLTILSIVVPGVLTLV FLHYSGAFESYLEKLNQGDARTRKLGWWFRGISTLMTRPGDERTYFTLGWRVLGSERDYK LRVYPQLAYGIILPLIFISTEIRDMPFATAQHYIAYAGMGVIVALAPALVNLRFSSQPKA MAVFQYVPFTTHGLLLRGVVKAMFARLFLPPLLLITLVTTIMGGWLSLLAGISVIVLTYG FTLMMGWPLVGGQFPFASVYSANANFSGGAVGCVSIAIGLIAAMAVIFIGGFLASWLFPL CLIILGASIGALLGHFYRTNLRYELRINTEND >gi|225002466|gb|ACIZ01000113.1| GENE 25 25113 - 25955 278 280 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 10 240 1 232 312 111 30 4e-24 MTYIHNNARLKEAIMMAEPIVSLNHIVKSFGAKQVLKDLSFSITPGNIVGYIGPNGAGKS TTVKMMLGLLQPDAGTIELFGQPLKPNATAYKRRIGYVPESADVFDALTAREYLSLIGQL YGLSAADAEQKAFALAELVNLKDAFDRRISSYSKGMRQLVLIIASLLHDPDILFWDEPLN GLDANTVLVIEEVLQNLRDRGKTIFYSSHILDVVQKLSDRIILLNDGMVVADGPFKTLAK EADTNLQQLFNDLTGFAEHGQKAQTFVDIVTGGDSNETAE >gi|225002466|gb|ACIZ01000113.1| GENE 26 26165 - 26713 417 182 aa, chain - ## HITS:1 COG:SPy1208 KEGG:ns NR:ns ## COG: SPy1208 COG4720 # Protein_GI_number: 15675172 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 3 176 1 172 185 84 35.0 1e-16 MQVSRHSLKNIIFTGLFAAIIYIGISLLRIPIPAMVGRPFIHFGNPLMVLAILFLGGRLG GFAAVVGLGGFDLLNGYAATSWLTALEAIVMAIVVSALVKAFKHQDKPQYIITIAIVAGL TKIVTSYLTGIVEALMVGTILKTAVVGAFLSLPATVINSIATAIIVPILYFMLRPLFKRF NS Prediction of potential genes in microbial genomes Time: Wed May 25 20:26:10 2011 Seq name: gi|225002465|gb|ACIZ01000114.1| Lactobacillus rhamnosus LMS2-1 contig00147, whole genome shotgun sequence Length of sequence - 21407 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 7, operones - 3 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 84 - 908 797 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase - Prom 939 - 998 6.3 - Term 1111 - 1170 16.1 2 2 Op 1 9/0.000 - CDS 1196 - 2068 752 ## COG0685 5,10-methylenetetrahydrofolate reductase 3 2 Op 2 . - CDS 2046 - 4331 1872 ## COG0620 Methionine synthase II (cobalamin-independent) - Prom 4492 - 4551 4.0 + Prom 5116 - 5175 4.4 4 3 Op 1 35/0.000 + CDS 5225 - 6943 270 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 5 3 Op 2 3/0.000 + CDS 6947 - 8728 240 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 8738 - 8771 3.1 + Prom 8757 - 8816 4.0 6 3 Op 3 21/0.000 + CDS 8887 - 9048 207 ## COG0477 Permeases of the major facilitator superfamily 7 3 Op 4 3/0.000 + CDS 9066 - 10109 763 ## COG0477 Permeases of the major facilitator superfamily + Term 10245 - 10278 1.4 + Prom 10163 - 10222 5.2 8 3 Op 5 3/0.000 + CDS 10413 - 11129 613 ## COG2188 Transcriptional regulators 9 3 Op 6 9/0.000 + CDS 11178 - 12833 1449 ## COG0366 Glycosidases 10 3 Op 7 . + CDS 12837 - 14837 2157 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 14923 - 14961 3.0 + Prom 14989 - 15048 3.1 11 4 Tu 1 . + CDS 15092 - 16378 1136 ## COG3633 Na+/serine symporter + Term 16446 - 16502 9.5 + Prom 16567 - 16626 4.1 12 5 Tu 1 . + CDS 16683 - 18164 1078 ## COG0531 Amino acid transporters + Term 18246 - 18297 12.6 - Term 18232 - 18285 11.1 13 6 Tu 1 . - CDS 18340 - 19278 800 ## COG0039 Malate/lactate dehydrogenases + Prom 19419 - 19478 4.8 14 7 Op 1 . + CDS 19513 - 20856 1348 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase + Prom 20956 - 21015 4.8 15 7 Op 2 . + CDS 21071 - 21271 330 ## COG1278 Cold shock proteins + Term 21285 - 21334 14.0 Predicted protein(s) >gi|225002465|gb|ACIZ01000114.1| GENE 1 84 - 908 797 274 aa, chain - ## HITS:1 COG:CAC1622 KEGG:ns NR:ns ## COG: CAC1622 COG2240 # Protein_GI_number: 15894900 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Clostridium acetobutylicum # 2 260 4 269 290 135 31.0 6e-32 MSTKSIIISQDLCGVGQVSMGVALPLVAGLGLTPYVLPTALLSSHTGGLGANTYLDLSSE MSGILKHWQQLQLNPDGIYLGYLGQGAADQWERWLPKFQSHLILIDPVMGDDGKRYKGFD SQYVATMQRLAQRATVLTPNVTEAQLLLEEPLTAPTDPKAVSALARRLYTQFNSAVLITG VPYHNQVAVIGVDAQGGPLALAQPKEPGHYFGTGDLFAAALASALLKGQTLRQAAAIGMI AAQIAIKATLATNTNPKYGLNLTGVISAISKELP >gi|225002465|gb|ACIZ01000114.1| GENE 2 1196 - 2068 752 290 aa, chain - ## HITS:1 COG:Cj1202 KEGG:ns NR:ns ## COG: Cj1202 COG0685 # Protein_GI_number: 15792526 # Func_class: E Amino acid transport and metabolism # Function: 5,10-methylenetetrahydrofolate reductase # Organism: Campylobacter jejuni # 14 285 5 273 282 256 45.0 4e-68 MKISQCFKDHQVISFEVFPPRKNATNIAMRPILNTLDAVKAADPDFVSVTFGASGNKPHM GTLEVAKLIKDEFNLEPVAHLPAAQLTRAQVDAELRGFQEAGIDNILALRGDIPKSGRVS EDFPYACNLIEHIHQVGDFDVVGACYPEKHPESPDVVSDIRHLKEKVDAGASQLISQLFF DNQVFYQFRERAALAGINVPIEAGIMPVINEHQIERMATMAGVHLPPKFVAMMQHFSGNK EAMRDAGIAYAIDQIIDLLVHGVDGIHIYTMDNPTVVKRIAAATQTIRNA >gi|225002465|gb|ACIZ01000114.1| GENE 3 2046 - 4331 1872 761 aa, chain - ## HITS:1 COG:SP0585 KEGG:ns NR:ns ## COG: SP0585 COG0620 # Protein_GI_number: 15900494 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Streptococcus pneumoniae TIGR4 # 1 753 1 749 749 887 58.0 0 MTTTIIGYPRIGEHRELKFATQKYFKHQISAQDLQEKAKALRKAHWETIQAAGIDQIPTG DFSFFDNTLDVANLLNIVPKRYQDLNLSPLDTYFAQARGYQGEAGDVKALAMKKWFNTNY HYLVPEFDHDTQIQVTDWQLFAQFEEAKALGINRRPTLIGPYTLLKLSRFIDVVPDDFVA DLISAYTTIIDRLHQAGADWVQLDEPALVYDQTDADLALFERLYTPILAQKKATKILVQT YFGDLTDSFDRIQKLPFDGFGLDFVEGYANLDLLKQHGFPAHATLFAGIVNGKNIWRTHY ADALATIKQLATITDKLVLSTSTSLLHVPYTLRNEAHLKPEEKQYLAFAEEKLNELHELD AIFHTGADHAAYQANVALFSKPRYQENKALNAKIAALTPEDYKRTPERKTRLAIQAKEFK LPLLPTTTIGSFPQTAEVRRNRAKFRRHEITEDEYTAFNHKEEIEWLRFQEEIGLDVLVH GEFERNDMVEYFGENFGGFRFTDNGWVQSYGTRGVKPPIIWGDVVRTKPITVAETVFAQS QTDHLVKGMLTGPVTIYNWSFPREDLSQKTSVEQIALALEDEVLDLEKHGIKIIQIDEPA LRENLPLRKKDWYPKYLDWAVPAFRLVASKVKPETQIHTHMCYSQFGDIIKAIDDLDADV ISFEAARSDFSLLDILKATHFQTHVGPGVYDIHSPRIPSKDEIVHIIHEILKRLPADHVW INPDCGLKTRDVPETKASLINMVAAAKQVRKELTHENQPVL >gi|225002465|gb|ACIZ01000114.1| GENE 4 5225 - 6943 270 572 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 324 556 125 356 398 108 31 3e-23 MKVLFPYIKKYRWDAIWSVVAIFVVAFATLWQPHLLQIIMNAIMKNDKQTVWVNGLYLIG LAIVGIAGGIVNTIYSARVALGVATDLRADEYAKIQSLAYADVEKFSPSNLVVRMTNDIN QVQQIIMGFFQQVTRIPILFIGAVILAIVTLPQLWWVIAVMMVLLFGVSFFSFSHMGKYF GRMQQLIERVNTLARENLMGMRVVKSFVQGANQTKTFAESSDEMRDVSVKIGNLFALLMP AFFLVANLAMALSIWLIGQNITSQPSNLAAITSFINYLMQILFAIINGGFMLTFASRALV SLRRIHEVMDTKPSMTFVDGPQRDLDGSVEFDDVTFTYPGDEKPTIRDIDFAVKPGEMIG IVGATGSGKTTLAQLIPRLFDPDTGIVKVGGHDVRAVTEADLRKTVGYVLQRSTLFSGTI AENLQQGNPNADLAAMKWAARVAQSAEFIERLPQTYNAEVEERSSNFSGGQKQRLSITRG VIGHPKILILDDATSALDARSEKLVQEALAHELKHTTTIIIAEKISSIIKADRILVLDDG RLVGSGTHHELVQHNRVYREIYATQKALEEGV >gi|225002465|gb|ACIZ01000114.1| GENE 5 6947 - 8728 240 593 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 359 577 135 353 398 97 30 9e-20 MKDLKNAGKFYAHYLRPYWLEFLITTILIAISTWAIVVAPTYMGRAIEELTVYVQQWMNP ATRAQASFAAFNHTLAIFVLLYVIDATSILISSLLLSKISGYSTGTMRVGLFRKMQRMKV RYFDSHSDGDILSRFTSDLDNIFNAMNQALIEIFLSGAQFIGIIWMMFTQNATLAWITMA STPVAIGLSAFVMHQASVSVDRQQDDIGRLNGYINEQITGQKMLITNGLQQESVAGFQPY NAAVRKSNLRGQIWSGILNPLLMGLSLLNTAIVIFAGSWLALNGSLSQGAALAMVVVFVN YAQQYYQPIVQLTSLFNMIQLAITGARRITEVREQPDEVDPQNGRTLDGLKHELLIDNVH FSYIPGKEILHGVTIKVEKGEMVALVGPTGSGKTTVMNLLNRFYDVDSGVITFDGVDVRD FKLASLRQNVGIVLQDPQLFSGTIRDNIRFGDPTADQARVEAAAKQANIHDFIMSLPDGY DTFVSDEQSVFSAGQKQLMSIARTILTDPRLLILDEATSNVDTVTEAKIQAAMDNVIQGR TSFVIAHRLKTILNADKIVVLRDGRIIEEGNHEQLLAQNGFYAELYHNQMVFE >gi|225002465|gb|ACIZ01000114.1| GENE 6 8887 - 9048 207 53 aa, chain + ## HITS:1 COG:SP1587 KEGG:ns NR:ns ## COG: SP1587 COG0477 # Protein_GI_number: 15901429 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 52 1 52 408 57 53.0 4e-09 MSKRRYLVALGGILLHLMIGSVYAWSVFTGPIAKQTGWALSAVTIAFSIAIFF >gi|225002465|gb|ACIZ01000114.1| GENE 7 9066 - 10109 763 347 aa, chain + ## HITS:1 COG:SPy1392 KEGG:ns NR:ns ## COG: SPy1392 COG0477 # Protein_GI_number: 15675316 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 334 62 397 398 346 55.0 4e-95 MGRLVERFGPRLTGTVAALLYGSGILLTGLAVQIHSLPLLYIGYGVIGGLGLGAGYVTPV STIIAWFPDKRGLATGMAIMGFGFAAMLTGPVAQQLIANLGVVATMYVLGAVYMVIMLGS AQVIRKPHPHEVPAADLAKSVSLTGKAMKANEAVKTRSFRYLWLMFFINITCGIGLVAVA SPMAQQQTGMSATTAAVMVGVVGLFNGFGRLAWATLSDLIGRPLTYTLIFIVDVAMLAGI LVLRSPLLFGIALCLIMSCYGAGFSVIPAYLGDVFGTKQLGAIHGYVLTAWAAAGVAGPT LLSFSEQYFHNYSVSLMIFIVLELIALGLSIRIRHQFADAQVKDVTE >gi|225002465|gb|ACIZ01000114.1| GENE 8 10413 - 11129 613 238 aa, chain + ## HITS:1 COG:lin1221 KEGG:ns NR:ns ## COG: lin1221 COG2188 # Protein_GI_number: 16800290 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 3 235 6 236 237 189 47.0 4e-48 MRKYDAIYQDLKEKIEAEIYATGSLLPSESALQDMYQASRDTVRKALRLLKDDGFIQSQK GKGSTVINRQEYVFPVSGVVSYAELAAQFHLQTRTVVLTNHFATLPAKSFKDVDPTVEVK QMRLLKRVRYLENEPDIIDIDYLDPKVVPPIPESVAKDSLYAYLEGPVGLTIAYATKEIT VEAATEEDQRYLKIPPSAVVVVVRSCSSLTDTTKFQYTESRHRADRFKFHDFARRIRP >gi|225002465|gb|ACIZ01000114.1| GENE 9 11178 - 12833 1449 551 aa, chain + ## HITS:1 COG:SPy2096 KEGG:ns NR:ns ## COG: SPy2096 COG0366 # Protein_GI_number: 15675852 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pyogenes M1 GAS # 5 548 6 542 542 661 59.0 0 MAFHKKVIYQLYPKSFYDSDGDGVGDLRGIIEKIDYLKALHIDMIWFNPFFVSPQYDNGY DVADYRQIDPRFGTMADFEELAQKLKAAGIDIMLDMVLNHTSTQHVWFQKALAGDKHYQD YYYIRPPKPDGSLPTNWESKFGGPAWAPFGDTGNYYLHLYERRQADLDWHNPAVRQEAAA IINFWRAKGVHGFRFDVLNVIGKANQLVDAPPEVESKTLYTDTPIVQDYIKELAANSFGQ DLNSVTVGEMSSTTIKNSIAYTKPENHELSMVFQFHHLKTDYKNGEKWSKMPYDFKALRN ILHTWGQQLDQGGGWQALFWNNHDQPRALNRFGDVGQYRVKSAEMLAAAIHLSRGTPYIY MGEEIGMTDPHYHSMADYVDVEAKNAYQALLKAGKSEKEAFAIILAKARDNSRTPMQWDD TANAGFTTGTPWLRPTNQREINVKAELAHGEIFRFYQKLIALRKQYQVISNGSYVPFGTE IDRLYAYERVAGDAHLLVLNNFSDKAITVPLPPRFQHARVLITNEADLTPTATMTLPPYA TIALLQSDKGE >gi|225002465|gb|ACIZ01000114.1| GENE 10 12837 - 14837 2157 666 aa, chain + ## HITS:1 COG:L37906_2 KEGG:ns NR:ns ## COG: L37906_2 COG1263 # Protein_GI_number: 15672409 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 283 648 1 389 406 286 46.0 6e-77 MTKKLHLMAPVSGLAMAITDVSDPVFSQKMMGDGFGIEPTDGQIAAPVDGRIMMIADTKH AIGIKADDGAELLIHLGIDTVELKGAPFEIDTAMDARVKAGDVIGSMDLDAIKKAGKKTT VIVAITNTKEVVDQLDVTPGEVKRGEEVAVMTPKAAAVEQAPAAPKNESKYAATARQIIA DVGGAQNVNSLIHCITRLRFYLKDEQKPDDDTVRNIPGVIDVARANGQYQVVIGQAVTDV YDEVIKQLGPGYSNAEGTAKAIQETQAEAKDTSALGTIKRWAQALIGTITGSMIPVIGLL AASGMLKGILNILTTWGGLKTTNPTYEIINAMGDAAFYFLPVIVGFTAAQKLGSDPVIVG IIGAFLIYPSIAKIATAGKVTGTVLGMGINANFFGLPVHIANYTYSIFPMIFAAWMAAKI EPWIKSWMPLVLRMIFTPLVEIFLVGMTVVLAVGPLITVLSNGITAGIQALLSLTPMVSD AIIAGFYQVLVIFGLHWAVIPVITAQLSSAHPESVLNGIVSISMIAQGAGALAVWVKTKH NPALKGLSISAFISACCGITEPAMYGVNLKYGRVFIFSSIGAAIGGLVNGLLNVNMYGFT GSFLGAPSFVAPGWAHNPNNIWFFWIASLVTLVAAFTLVYLFGYKDADANAAKAVPKKKR LGKTVE >gi|225002465|gb|ACIZ01000114.1| GENE 11 15092 - 16378 1136 428 aa, chain + ## HITS:1 COG:NMA0298 KEGG:ns NR:ns ## COG: NMA0298 COG3633 # Protein_GI_number: 15793312 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Neisseria meningitidis Z2491 # 8 397 14 405 409 329 48.0 8e-90 MYKRYKDVSLILKIVIGIVVGAVLGVLVPSWSFIDVLGKLFVGALKAIAPLLVFLLIMSA ISKYRSGSKNHFGTVIVLYLSATLLSSVAAVVVSYLFPIKLVLPGAMKIAESAPKDLGTV VTGLLTNAVANPISALVEGNYLAILFWSLLIGSGLRLTSATTKKVVTELAETVSSVAQNV IQFAPFGIVGLLHESLSKTGVRGVMAYGQLLILLVATMVFVYLVVYPFMVWLLTRQNPYP LTFWTLKVSGIPAFFTRSGAVNIPINLKASEDLGLNKDSYAISIPLGGSANSGGAAITVS IMTLATANTMGVHVSIFLALLLCFLSAISATGVSGIAGGSLLLIPMAASLFGISNDIAMQ VVGIGFIIGVVQDSVETAVNSASDLLFTATAEYADDRREGHPVNMRAAVKAAGKQKLKSA APVAEDDK >gi|225002465|gb|ACIZ01000114.1| GENE 12 16683 - 18164 1078 493 aa, chain + ## HITS:1 COG:SA2396 KEGG:ns NR:ns ## COG: SA2396 COG0531 # Protein_GI_number: 15928189 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 471 1 470 482 627 70.0 1e-179 MGKVWQRLFRKEDPSVYEDKDSHLPRVLRVRDFLALGVGTIVSASIFTLPGVVAAKHAGP AVSISFLIAALVAGLVAFAYAEMSAAMPFAGSAYSWINVVFGEFFGWIAGWALLAEYFIA VAFVASGLSANFRGLLATIGVNFPAALAHPFGTNGGIVDLVAVVVMLLVGILLSRGVSSA ARVENILVVMKVLAILLFLVVGLTAIHPENFHPFFPAYHLNADGTPFGGWQGIYAGVSMI FLAYIGFDSIAANSAEAIDPEKTMPRGILGSLLIAVFLFVSVGLVLLGMFPYQDYANNAE PVGWALRHSGHAVVATVVESIAVLGMFTALIGMAMAGSRLLYSFGRDGMLPHGLGKLNSR KLPNRALAVLITIGVIIGAFFPFAFLAQLISAGTLIAFMFVTLGIYRLRPREGQDIAKPR FRMPFYPVLPAVAFLGSLVVFLGLDIQAKLYSGVWFLIGCAIYFLYGMRHSALTKGSEVE KETEALEQAKSDE >gi|225002465|gb|ACIZ01000114.1| GENE 13 18340 - 19278 800 312 aa, chain - ## HITS:1 COG:lin0242 KEGG:ns NR:ns ## COG: lin0242 COG0039 # Protein_GI_number: 16799319 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 1 311 1 310 313 319 49.0 4e-87 MQHSGNIILIGDGAIGSSFAFNCLTTGVGQSLGIIDVNEKRVQGDVEDLSDALPYTSQKN IYAASYEDCKYADIIVITAGIAQKPGQTRLELLSINAKIMKEITHNIMASGFNGFILVAS NPVDVLAELVLEESGLPRNQVLGSGTALDSARLRSEIGLRYNVDARIVHGYIMGEHGDSE FPVWDYTNIGGKPILDWIPKNRQASDLAEISHRVKTAAYGIIEKKGATFYGIAASLTRLT SAFLNDDRAAFAMSVHLDGEYGLSGVSIGVPVILGANGLERIIELDLNPEDHKRLADSGA ILKDNLKKAQEA >gi|225002465|gb|ACIZ01000114.1| GENE 14 19513 - 20856 1348 447 aa, chain + ## HITS:1 COG:SP1306 KEGG:ns NR:ns ## COG: SP1306 COG0334 # Protein_GI_number: 15901165 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 447 1 447 448 577 65.0 1e-164 MTSATAYVESVLATLKQRDPHQPEFLEAATTILKTVVPVFEKHPEYIQANILGRLVEPER AIQFAVPWQDDQGQIQVNRGFRVQFNSAIGPYKGGLRLHPSVNLSIVKFLGFEQIFKNSL TTLPIGGAKGGADFNPKGKSDAEIMRFCQSFMTELSKYIGPDLDVPAGDIGVGAREIGYL YGQYKRLKRAQRGVLTGKGLSYGGSLARTEATGYGLIYYTDELLKANGETLAGKQAVISG AGNVAIYAAQKAKALGVKVLTVSDSNGYVVDENGIDLATVKQIKEVERGRIKTYAERVDG AKYYEGSVWDATIKFDLALPCATQNEINGAQAKRFKAAGVIAVAEGANMPSDPDAIAAYQ HDDILYGPAKAANAGGVAVSALEMSQNSRRLSDSFDTVDGQLHEIMQHIFKASADAAAEY GVPGDYEAGANIAGFLKVADAMYAQGM >gi|225002465|gb|ACIZ01000114.1| GENE 15 21071 - 21271 330 66 aa, chain + ## HITS:1 COG:lin1401 KEGG:ns NR:ns ## COG: lin1401 COG1278 # Protein_GI_number: 16800469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 65 1 65 66 91 73.0 4e-19 MQKGTVKWFNADKGYGFITGEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSDRGPQA ANVTKL Prediction of potential genes in microbial genomes Time: Wed May 25 20:26:18 2011 Seq name: gi|225002464|gb|ACIZ01000115.1| Lactobacillus rhamnosus LMS2-1 contig00148, whole genome shotgun sequence Length of sequence - 23006 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 16, operones - 5 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 116 - 544 261 ## LGG_00610 hypothetical protein - Prom 617 - 676 4.6 - Term 620 - 673 17.1 2 2 Op 1 . - CDS 747 - 1187 582 ## LGG_00611 disulfide bond formation regulator - Prom 1213 - 1272 3.7 3 2 Op 2 . - CDS 1287 - 2771 1064 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Term 3031 - 3080 2.0 4 3 Tu 1 . - CDS 3220 - 3843 511 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 3871 - 3930 6.9 - Term 3895 - 3928 -0.6 5 4 Tu 1 . - CDS 3959 - 4804 717 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 4875 - 4934 7.2 - Term 4849 - 4897 0.9 6 5 Tu 1 . - CDS 5004 - 6395 1048 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 6430 - 6489 4.1 + Prom 6545 - 6604 3.1 7 6 Tu 1 . + CDS 6641 - 8845 1495 ## LC705_00597 hypothetical protein + Term 8883 - 8922 7.5 - Term 8871 - 8910 -0.1 8 7 Tu 1 . - CDS 8964 - 10946 1770 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters - Prom 10978 - 11037 5.0 - Term 11156 - 11188 -0.9 9 8 Op 1 . - CDS 11203 - 11610 409 ## LC705_00599 hypothetical protein 10 8 Op 2 . - CDS 11619 - 12071 437 ## LC705_00600 LytR/AlgR family response regulator - Prom 12093 - 12152 2.9 11 9 Op 1 45/0.000 - CDS 12169 - 13035 641 ## COG0842 ABC-type multidrug transport system, permease component 12 9 Op 2 . - CDS 13037 - 13930 305 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 14078 - 14137 3.5 - Term 14138 - 14177 4.3 13 10 Op 1 . - CDS 14239 - 15021 473 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold 14 10 Op 2 . - CDS 15093 - 15734 516 ## COG3338 Carbonic anhydrase - Prom 15771 - 15830 2.9 - Term 15775 - 15814 8.4 15 11 Op 1 . - CDS 15870 - 16196 379 ## COG0393 Uncharacterized conserved protein - Prom 16264 - 16323 3.1 16 11 Op 2 . - CDS 16428 - 16937 321 ## COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding - Prom 17009 - 17068 4.8 17 12 Tu 1 . - CDS 17173 - 18084 809 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 18114 - 18173 6.0 - Term 18187 - 18218 -0.8 18 13 Tu 1 . - CDS 18230 - 19546 965 ## COG0004 Ammonia permease - Prom 19688 - 19747 5.2 - Term 19792 - 19832 7.0 19 14 Tu 1 . - CDS 19890 - 20831 835 ## COG2837 Predicted iron-dependent peroxidase - Prom 20918 - 20977 4.6 + Prom 20874 - 20933 3.9 20 15 Tu 1 . + CDS 21122 - 21787 300 ## PROTEIN SUPPORTED gi|163764775|ref|ZP_02171829.1| ribosomal protein L16 21 16 Tu 1 . - CDS 21793 - 22614 645 ## LC705_00612 DNA-entry nuclease - Prom 22805 - 22864 2.9 Predicted protein(s) >gi|225002464|gb|ACIZ01000115.1| GENE 1 116 - 544 261 142 aa, chain - ## HITS:1 COG:no KEGG:LGG_00610 NR:ns ## KEGG: LGG_00610 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 142 1 142 142 215 97.0 3e-55 MNKSFNQSSIYRFGLPLCLGLGSLAFLAIGIWATILLLFTSKITTVLILVLLGGWFVIGC IITGAVLLWQLVRNPKLVNRNVHRLQWLLGLIAIIIAAISLPLSYFWADTGDAPGVVFIG LFLAAMPFACWVLVSVWRWTLG >gi|225002464|gb|ACIZ01000115.1| GENE 2 747 - 1187 582 146 aa, chain - ## HITS:1 COG:no KEGG:LGG_00611 NR:ns ## KEGG: LGG_00611 # Name: not_defined # Def: disulfide bond formation regulator # Organism: L.rhamnosus # Pathway: not_defined # 1 146 1 146 146 286 100.0 1e-76 MAERSLYHTYVRNENGLVGESYVEGNQGLALGVSSSLIDAPGTNPEQFIAFALSTCFNAT IRIVQHREGTAEDSQLRTRVDIVRDKIGYKFIVDAQILMPSHTREEAQKIVTQALDECPV AKLLKENENVTFRIVDEFTDEPTLGE >gi|225002464|gb|ACIZ01000115.1| GENE 3 1287 - 2771 1064 494 aa, chain - ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 490 1 510 513 449 48.0 1e-126 MSTIQIKHLHFAYDGQAPIFTDAGFDLDTNWHLGLVGRNGRGKTTLLRLLQKQLDYRGTI TVPLPLQYFPQALDESQVTLDAAQAFNHVAQWQLERELNLLHADPAILWRPFADLSGGEQ TKVRLALLFIQTDGFALIDEPTNHLDLRSRRQVAAYLQQKPGFIVVSHDRDFLDAVTDHT LAIERQKITLYQGNYTTFATEKARQDQTEIAQNTHLKTEISRLKQTAYDKKLWAENKERS IYGDRHVKNSGHRGRGFISARAARTMKKSKNLEHRMNKEIEEKEQLLKNLEKVDPLTMNP QPTHQHQLIVAEKVQLGFDQPLFEPISFTLHRGDRIAIVGENGSGKSTLIRALLGQFNGI SRGLLKLAPVSLSLVRQQYADNRGTLPDFAETHQLSREALLNNLRKLGMPRADFATPIEH LSMGQQKKVEVARSLATPAALYIWDEPLNYLDTYNQDQIIAAVCQYQPTMLFVEHDEHFI DQVATKMIRLHPLL >gi|225002464|gb|ACIZ01000115.1| GENE 4 3220 - 3843 511 207 aa, chain - ## HITS:1 COG:L119013 KEGG:ns NR:ns ## COG: L119013 COG0702 # Protein_GI_number: 15673091 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 1 207 1 210 211 134 38.0 8e-32 MKIFVVGAHGQIGQLLVHKLLDRGDTVTGGYRDPLTQTPDPEKNFRAVELDLSWPVNRLA NLFAGHDAVVFAAGSRGKDLLGVDLDGAIKTMKAAEAKDVGRFIMLSALDAEDPAHWPAQ LHDYYIAKYYADEWLIHNTDLDYVIVQPTSLTNEPAQGTITLQPQRPSTIPRADVADVLV AALDSDRHRETIKIATGPTPIEEAVKS >gi|225002464|gb|ACIZ01000115.1| GENE 5 3959 - 4804 717 281 aa, chain - ## HITS:1 COG:STM1288 KEGG:ns NR:ns ## COG: STM1288 COG0656 # Protein_GI_number: 16764639 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Salmonella typhimurium LT2 # 7 281 11 285 285 244 45.0 2e-64 MKTINIGDVTVPIVGMGTWYLGEGNAEQSARETQALKYGLDHGLRVIDTAEMYGNGAAET LIGSFLGDYPRANIYLISKFYPSHADKKQMRTALTNSLSRLKTDYLDLYLLHWRGATPLA ETLEGLQELKKEGLIRQYGVSNFDVDDMDQLTLEPGGEQVVANEVLYNLQSRGIDFDLLP RQKQAGITTIGYSPYGSGSGKSIKLTPELTDLAKSKGISTHQLLLAWVLRNGDVLSIPRT GEASHMAENIAAADVTFSPDELDLFDQAFPMPRHHVPLEII >gi|225002464|gb|ACIZ01000115.1| GENE 6 5004 - 6395 1048 463 aa, chain - ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 454 6 459 459 545 66.0 1e-155 MQRKLSGRHMQMIALGGTIGVGLFMGASATIKWTGPSVLIAYIIAGLFLYLIMRALGEML YVDPATGSFAKFASEYMHPLFGYLTAWSNIFQFVVVGMSEMIAIGEYFKFWWPGLPAWLP GLVAITFLVLANLISVRMFGELEFWFALIKVVTIVLMIIAGLGVILFGLGNGGRPVGISN LWTHGGFFTGGFTGFCFALSIVLGSYQGVELLGITAGEAENPQPTIVKAVKDTIGRILIF YVGAIFVIVAVYPWNQLSALGSPFVQTFAKIGITFAASLINFVVITAALSGSNSGIYSAS RMLYTLADAKQLPRIFTKLNRHGVPFYPVVSVGGGILLGVLLNAILPYVAPAAKNVFVLV YSSSVLPGMVPWFVILISEIKFQKVHADKMTDHPFKMPFAPYSNYLTLIFLVFTLFFMLL NPETSISLVVGIIFLSLVSLHYFIYYRHGNSKTKAVMDQDNDL >gi|225002464|gb|ACIZ01000115.1| GENE 7 6641 - 8845 1495 734 aa, chain + ## HITS:1 COG:no KEGG:LC705_00597 NR:ns ## KEGG: LC705_00597 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 734 1 734 734 1196 100.0 0 MDNKLKTSLNAYMAKHGLNTNAASIAIGVSVPTLRKALRGHNVSRKTTAKIESIIASGKV PEAAKTTVKRTPKKTAAAKPAAKTPAAKTRTRQTTAKAPATKPSTTKQAATKTPTRQAKA QTQPTSIAATDQNKAAVHSQENSASPQSPRRTTKRVARTTTTGRQANRNTRQSPSTSGVN TASESKPTTKRPTTRNHRFTIRQQPDVATQQAQSEANKRQAQAANSQSTANSMSTSESTD RHENGVRHTKQHTPTGKTDATRYNSTSEHEPVRRDRRNVRLDRNKQNGTRRPGRPRQNRF AANADPQNWQPMTQSASTSNSQSLSNQDASQHRTPAVVNKVTTHTPSVIRSTSADRSSTN GSAANSTSNAANTQSAENRSARANYGTHDEVPLVTGKQLRLFIDESFEEHRPDPRMMHMG IAAILPEGDDESLAGFRNALYPYGWEPGDEVKARGKQVDALTQLIKAAKHENMGMYTVFS RKTTYPDFAPSMEYLYPYIGATIHVLRDVHTIFDDIVIMIDHRNELEGNQLVMGADIVSR YLTLSLERPIKVRFEFADSREHLGLQLSDFIANAALRLSKDELSLIGITPMPELGISQHD QLVRLTLLGLQQVVMGVRAERAATPSKHSQPDRFMQLIFDATYADSDLVRGALPVVKNAV EQLIDVLPNARVGQISGMPNQSWYDMTARMAGLLRYINKDPKPYGKVLAKIESVTKTAAD ELEMALDSGSKTKR >gi|225002464|gb|ACIZ01000115.1| GENE 8 8964 - 10946 1770 660 aa, chain - ## HITS:1 COG:SA2228 KEGG:ns NR:ns ## COG: SA2228 COG0025 # Protein_GI_number: 15928018 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Staphylococcus aureus N315 # 7 649 7 684 692 257 29.0 5e-68 MNQVVIFGIMLATVIVGNLLARHVPQIPLPFFLIGLGAALAIMPSLRSFTIDPSAFSFAI IAPLLFNEGQNASRGQIGRSLTNIVSLAVGLVIVSVVILGFGVHALFPVIPLSLAFALIA IVTPTDASAVSAVAQANPLSTSQMQLLNNESLFNDAAGIVAFDLALSAYISGQFSATDAL LDFLFVFFGGILFGALAGIFIVNLRAWLIRIGDDEPLIMVGIQLLTPLLVYFLAEELALS GILAVVAAGIAQGVERDRLRLTSARMQIISANVWEMIAAVLSGLVFVLLGVSLPNVVIEA LRGQAGLFGLLIGIGAFIYVAKSFVRFIWSRTLLKMGKKHRWRNALIMMLGGANGTITLS LAFSIPQTVAGHHFALRQGLILIAAVEILLSLIVPVIVLPFCVSKPPKRNRQFIWLRRML AAGIDAMRDETEHHSEAQIVADALAQEMILNDNPSRRLQRTIFEGTITAEKSAIETLRMN GTITRDEAHYYNRFIDLNDFTADQRLWKNLWLRFRFSFNMGRMYKAFNEAQNAFLTTPLN LEPIYWKRQFAAHGEDLLPIEQAGYTAVMRYLQRIETIQNRSAVNTIRRFYRDRHRRVHS ESFDGDALYAMFLKAFHAEYEFIQQAFTDGKLSRDLMQRLQTRITFDEITYLKNQDSFID >gi|225002464|gb|ACIZ01000115.1| GENE 9 11203 - 11610 409 135 aa, chain - ## HITS:1 COG:no KEGG:LC705_00599 NR:ns ## KEGG: LC705_00599 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 135 1 135 135 221 100.0 5e-57 MKIIKDLITDSVIGMMIGATVYLGALMLQVQLTPPTPRTIAGLFVMSALIGMLALIFDNE SLSLPVAYSLHFIGTFAIVIGTNYLMGWQFLVGSALPNFLIAFLIIYVLIWLALYLSWQI TARKMNHVLKKRQGK >gi|225002464|gb|ACIZ01000115.1| GENE 10 11619 - 12071 437 150 aa, chain - ## HITS:1 COG:no KEGG:LC705_00600 NR:ns ## KEGG: LC705_00600 # Name: not_defined # Def: LytR/AlgR family response regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 150 1 150 150 241 100.0 5e-63 MKVSFKQDATMQPDDLQVYVKAAQLSPAVLQILQQIQQLADSHATLPLLVGERVIVLPTN EIVAIEVYGDQLSVHTRQEVYQSRGQLKTVLAKLDPQAFIQVTKSSLLNINYLTSLEASF SGNMTAFMANNMKLTVSRKYLPALKRLLGL >gi|225002464|gb|ACIZ01000115.1| GENE 11 12169 - 13035 641 288 aa, chain - ## HITS:1 COG:lin0986 KEGG:ns NR:ns ## COG: lin0986 COG0842 # Protein_GI_number: 16800055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 5 282 2 284 284 117 30.0 3e-26 MWAFVKRNLLLFFRNRAGVFFSVLGALIAFLLYLVFLKKSMSTLWPLTHPEKLLDPWLIG GTLTITAVTTTQNGLARMIVDRETGRLSDYLLTQASYLRIELGYLISAVIIGTIMQLLMF FTMSGAFLWLDHIAIFWQLTGQIIVLAVFSSLVWTAFNLLILSFVSRVTTMSGISTIIGT AAGFFAGVYLPIGSVPTAAQNLMKLTPFPYNAAIYRQLLLQQPLESTFSVHQTTARQTFE KMLGIRIDLHGLLSSSQTYLILTSFTLLVGLVIILIAKVSRKTALVRV >gi|225002464|gb|ACIZ01000115.1| GENE 12 13037 - 13930 305 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 8 296 9 306 311 122 30 3e-27 MILLETTNLTKTYGTKTVVNDISLKIQAGQLVAFLGPNGAGKSTTIGMLTGLIQPSSGKI TMGTATPNQAAYRQQIGVVFQDSRLDRQLTVKENLEIRSQMYTKTDPAWFDHLVDQFDLT PILNQAYGTLSGGQRRRVDIARALLNHPHLLFLDEPTTGLDIQTRQTIWTAIASLRAQSQ LTVILTTHYLEETEQADFVYVIDQGTIIAANTVGQLKQQYAGHQLIVRTHAPQQVQIAAT QANLPAQIDGDTVRVQVSHPQAAITLLTTIQPQLIDFEFRTADMNTIFVALTGKEIR >gi|225002464|gb|ACIZ01000115.1| GENE 13 14239 - 15021 473 260 aa, chain - ## HITS:1 COG:lin0949 KEGG:ns NR:ns ## COG: lin0949 COG4814 # Protein_GI_number: 16800018 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 45 259 53 294 300 79 25.0 6e-15 MTRKQSRQHRWGWRLLLILFLLLAGSYWVWWQLGSRRIHAQTYRQTSVVTVFVPGYASNG LTFGPMVTRFKQDRASNQVTTITISATGNRTITGANRYTGKNPLVNVIFEDAKAPEKETR QLTALLHWLRAKHNVTKVNLVGHSMGSNLSFRYLTTHHADAQPHVVKYVSLASEFYRDPT PQLQQFPKSVQTLVIGGQIFGASGDWAVSIAGVKRFEKALRAANIPSTLYIYHGTPLGAY HSSLHQNPYVDARILAFLFT >gi|225002464|gb|ACIZ01000115.1| GENE 14 15093 - 15734 516 213 aa, chain - ## HITS:1 COG:BH0360 KEGG:ns NR:ns ## COG: BH0360 COG3338 # Protein_GI_number: 15612923 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Bacillus halodurans # 17 203 74 269 275 100 32.0 2e-21 MAFLDYHHQEKWPNGFGQLQSPINLLPATPADPSTLKIETPWRVTQEIDDQVTIRLTGTG RTRIDQDQWQLMQAHIHVPAEHQITNQHAAELHFVHQSAIGALCVVAVLLPLGPDNVVLE QILDHFAAHSTQSIALSLDQLIPQQGTVYRYLGSLTTPPLTEGVTWYVIDQTAVTIGTQQ LHRYQQLFADNHRQLQARYQRPVLRSTFTKLAD >gi|225002464|gb|ACIZ01000115.1| GENE 15 15870 - 16196 379 108 aa, chain - ## HITS:1 COG:L158972 KEGG:ns NR:ns ## COG: L158972 COG0393 # Protein_GI_number: 15672916 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 3 106 2 105 108 97 51.0 8e-21 MAQEILITTTENIPGKHYEIIGEVFGLTTQSKNVISNIGAGLKNLVGGEIKAYSDMLHES REKAIDRLRTEARKAGGDAVVMMRFDSGSIGGDMQSVVAYGTAVKLLD >gi|225002464|gb|ACIZ01000115.1| GENE 16 16428 - 16937 321 169 aa, chain - ## HITS:1 COG:CAC0145 KEGG:ns NR:ns ## COG: CAC0145 COG2816 # Protein_GI_number: 15893440 # Func_class: L Replication, recombination and repair # Function: NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding # Organism: Clostridium acetobutylicum # 1 137 1 136 174 97 37.0 1e-20 MTFKFCPICGHALIPKLAGDDGNVPYCETCQRFWFPLFADCVLVLVVNEFDEIALVKMPY LSEKYASIISGYMQPGESAEESAKREVIEELGIHLDQLDYAGTYWYKKTSSLMHGFISHT SKQSLVTSPEISEAEWVPASLAPEKMFPDSPDNAALAVYRTYLQTKQRQ >gi|225002464|gb|ACIZ01000115.1| GENE 17 17173 - 18084 809 303 aa, chain - ## HITS:1 COG:CC3759 KEGG:ns NR:ns ## COG: CC3759 COG0604 # Protein_GI_number: 16127989 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Caulobacter vibrioides # 10 276 10 298 321 110 31.0 4e-24 MIGYGFSHAGGPEVIDAIDLPTPQPGPHEIQIKTSAIGLNNRDRMARQLGGSGLTVPGYD VAGTVSSIGSNVSRFKVGDRVVARTTSAYAEIVTAAADMSVLLPASITPEKGVAVITPGV TGYRMVELGNVKAGDTVIVKGASGGVGSAAIQLAVARGASVIGIASSRHEVAVERLGVEH FVAYDQGNPVTQLRQTADVVINAAMNGLGGDDDVAMTKDNGLIVSVSHTEPLLSRGIRFI HTRPLGGSEVGKALQLLIDLMAQNKLNVQVGYVLPFTREGFVKGHQLLDDPQHEGRIVIR VDR >gi|225002464|gb|ACIZ01000115.1| GENE 18 18230 - 19546 965 438 aa, chain - ## HITS:1 COG:L0236 KEGG:ns NR:ns ## COG: L0236 COG0004 # Protein_GI_number: 15673574 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Lactococcus lactis # 1 399 1 402 413 286 43.0 8e-77 MNLADTGFVIIASVLVWFMTPGLAFFYGGLVSKRNVINTMLSVFYITGIAILLWVAVGYE LSFNGNLFGVIGQVQHLFLSGVSLGTATVARIPTGVYILFQMMFAIITPALFVGAVVGRM HFKFLTWFIVLWSLLVYYPLVHLIWSPDGLLAGLGVLDFAGGTVIHINAGITALTLSAFL GRRADEHTVPYNRPWVLLGTAILWIGWYGFNAGSALGVNQAAMTAALTTSVGAAAALVTW MILDIWQTGHPTLIGTCTGALCGLVGITPATGYVTSFGAVCIGVASTLASYWFISKIKPR LGIDDTLDAFGCHGVSGIVGSVLTGVFASKTVAPGIAHAGLAYGGGWHLLLIQLAGTIIV IALVAAMVTIITSILTQFVAIRVSPAAEKMGLDYSEHAEPVDEEVAASWEQHTPVSSFPD EFKGQLHGFDPRPHQNDQ >gi|225002464|gb|ACIZ01000115.1| GENE 19 19890 - 20831 835 313 aa, chain - ## HITS:1 COG:MT0820 KEGG:ns NR:ns ## COG: MT0820 COG2837 # Protein_GI_number: 15840211 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted iron-dependent peroxidase # Organism: Mycobacterium tuberculosis CDC1551 # 32 305 28 306 335 232 44.0 5e-61 MTIDLRDVQDVYKDAGSDIIFATFDLKREDPASDKAMIADLAEHLPAFINSMNIRYPEAK LAVAFGLSRKAWDYLFPEAARPKELENFQSIVGPKYTAVATPADLFFHIRSQNSAVPFEL MSEIMAIIEANTVTLDETHGFRYFEGRAIIGFVDGTENPSALDTPEYAVIGDEDPAFENG SYAFAQKYQHNLDAWNDLSTEDQEKAIGRKKFNDLELDDEAKLANSHNVVSQDNDGGVEH KIVRMNVPFSNPAEKINGTYFIGYARHWTVTKRMLQGMFEKSDRLLDFSTPLTGELFFIP SKSVLGKIADGEL >gi|225002464|gb|ACIZ01000115.1| GENE 20 21122 - 21787 300 221 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764775|ref|ZP_02171829.1| ribosomal protein L16 [Bacillus selenitireducens MLS10] # 9 203 14 216 236 120 36 1e-26 MTVLNQVELVVRLLVAAFCGFAIGYERKNRFKNAGIRTHMIVALGSALIMIVSKYGFFDI LNLKNMALDPSRVAAQIVSGVSFLGAGAILVRHNNVNGLTTAAGVWTTAAVGMAIGAKLY IIGLSATVLVLCIQVLLHHHYRWLPGGDNGILTIRIRNEGFDMEHMRQTLGKYHIKVLNV SIKHEGDEVKMTLHVESKANEDMRRLLTFYADNPNIISIEF >gi|225002464|gb|ACIZ01000115.1| GENE 21 21793 - 22614 645 273 aa, chain - ## HITS:1 COG:no KEGG:LC705_00612 NR:ns ## KEGG: LC705_00612 # Name: endA # Def: DNA-entry nuclease # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 273 1 273 273 487 100.0 1e-136 MNNLVTLMLILAGITLLLLRNGTKRQRRANRKLAITLLLVGIASGGYTYTQQHPQTNWLP ALTSSSSSSTSTAKTGTSQQPVKQLAQLTENGQPEITINNNDPGFTQSELTTSNGPWTRF SDLDSLNRVGTANALLNQSIMPKVKREPLTWNPTGWHNKKVHGEWLYNRSHLIGFQLSGE NNNPKNLMTGTRQLNSPLMQAHEDDIAHYLKQSPQHFVRYEVTPIFRGDERLARGVAMRA QSIGDNTIRFNVYIFNVQPGVTLNYSDGTSQIN Prediction of potential genes in microbial genomes Time: Wed May 25 20:26:52 2011 Seq name: gi|225002463|gb|ACIZ01000116.1| Lactobacillus rhamnosus LMS2-1 contig00149, whole genome shotgun sequence Length of sequence - 37222 bp Number of predicted genes - 34, with homology - 32 Number of transcription units - 14, operones - 7 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 141 - 200 6.4 1 1 Op 1 1/0.000 + CDS 248 - 1861 1257 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 1875 - 1931 11.2 + Prom 1891 - 1950 6.4 2 1 Op 2 . + CDS 2010 - 3686 1211 ## COG0249 Mismatch repair ATPase (MutS family) 3 1 Op 3 . + CDS 3683 - 4264 561 ## PROTEIN SUPPORTED gi|148988990|ref|ZP_01820390.1| hypothetical protein CGSSp6BS73_02415 + Term 4378 - 4421 7.0 - Term 4365 - 4408 7.0 4 2 Op 1 4/0.000 - CDS 4438 - 5145 756 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 5 2 Op 2 5/0.000 - CDS 5160 - 7013 1824 ## COG0578 Glycerol-3-phosphate dehydrogenase 6 2 Op 3 . - CDS 7078 - 8595 1206 ## COG0554 Glycerol kinase - Prom 8701 - 8760 6.3 - Term 8739 - 8788 3.9 7 3 Tu 1 . - CDS 8802 - 9530 600 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 9713 - 9772 6.0 + Prom 9419 - 9478 3.6 8 4 Tu 1 . + CDS 9508 - 9627 85 ## + Term 9693 - 9735 0.6 + Prom 9794 - 9853 9.3 9 5 Op 1 1/0.000 + CDS 9972 - 10850 752 ## COG3711 Transcriptional antiterminator 10 5 Op 2 8/0.000 + CDS 10900 - 12612 1547 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 11 5 Op 3 2/0.000 + CDS 12668 - 14092 1242 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 14338 - 14367 -0.5 12 5 Op 4 . + CDS 14381 - 14716 446 ## COG1447 Phosphotransferase system cellobiose-specific component IIA + Term 14809 - 14865 9.4 + Prom 14935 - 14994 6.4 13 6 Op 1 2/0.000 + CDS 15050 - 16216 1140 ## COG0153 Galactokinase 14 6 Op 2 4/0.000 + CDS 16283 - 17278 1033 ## COG1087 UDP-glucose 4-epimerase 15 6 Op 3 1/0.000 + CDS 17275 - 18732 1183 ## COG4468 Galactose-1-phosphate uridyltransferase 16 6 Op 4 1/0.000 + CDS 18774 - 19769 783 ## COG1609 Transcriptional regulators 17 6 Op 5 . + CDS 19844 - 20854 342 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase + Term 20871 - 20906 4.2 + Prom 20974 - 21033 8.7 18 7 Tu 1 . + CDS 21189 - 21857 318 ## LC705_00630 hypothetical protein + Term 21872 - 21908 1.0 + Prom 22133 - 22192 5.8 19 8 Op 1 13/0.000 + CDS 22230 - 22724 574 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 20 8 Op 2 10/0.000 + CDS 22739 - 23047 462 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 21 8 Op 3 . + CDS 23104 - 24555 1498 ## COG3775 Phosphotransferase system, galactitol-specific IIC component + Term 24612 - 24653 7.1 + Prom 24610 - 24669 4.3 22 9 Tu 1 . + CDS 24735 - 24962 224 ## LGG_00660 hypothetical protein + Term 25071 - 25115 13.2 - Term 25053 - 25111 15.3 23 10 Tu 1 . - CDS 25155 - 25361 255 ## LGG_00661 hypothetical protein - Prom 25389 - 25448 7.0 - Term 25482 - 25545 2.4 24 11 Op 1 . - CDS 25610 - 26635 971 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 25 11 Op 2 . - CDS 26721 - 27401 552 ## LC705_00637 hypothetical protein 26 11 Op 3 3/0.000 - CDS 27422 - 28360 988 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) - Prom 28412 - 28471 2.5 - Term 28435 - 28470 4.0 27 11 Op 4 1/0.000 - CDS 28490 - 29491 1058 ## COG3684 Tagatose-1,6-bisphosphate aldolase 28 11 Op 5 4/0.000 - CDS 29524 - 30042 677 ## COG0698 Ribose 5-phosphate isomerase RpiB 29 11 Op 6 2/0.000 - CDS 30083 - 30511 532 ## COG0698 Ribose 5-phosphate isomerase RpiB 30 11 Op 7 . - CDS 30515 - 31291 642 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 31415 - 31474 11.0 - Term 31604 - 31642 5.0 31 12 Tu 1 . - CDS 31742 - 32368 542 ## COG0546 Predicted phosphatases - Prom 32388 - 32447 4.9 + Prom 32342 - 32401 3.2 32 13 Op 1 28/0.000 + CDS 32431 - 33555 1040 ## COG0420 DNA repair exonuclease 33 13 Op 2 . + CDS 33552 - 36683 2632 ## COG0419 ATPase involved in DNA repair + Term 36773 - 36832 12.1 + Prom 36846 - 36905 3.4 34 14 Tu 1 . + CDS 36952 - 37095 149 ## + Term 37111 - 37152 6.4 Predicted protein(s) >gi|225002463|gb|ACIZ01000116.1| GENE 1 248 - 1861 1257 537 aa, chain + ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 532 9 538 540 721 65.0 0 MTFSDRKLYEDVNLKFTPGNCYGIIGANGAGKSTFLKILEGELTPTTGTVSLSPNERMSS LKQDHFAFDDQTVMNTVLQGWERLYQVMTEKDALYAKPDFSEADGNKAAELEGEFAEMDG WNAESDASQLLQSLGISESEHQKLMADLPEGEKVKVLLAQALFGKPDVLLLDEPTNGLDP QAISWLEDFLADYEHTVLVVSHDRHFLNAVCTMMCDVDFGKIELYVGNYDFWKQSSELAL QLQSQANAKKEEQIKQLQEFVARFSANASKSKQATSRKKQLEKITLDDIRPSSRKYPYIK FEPERAIGNDLLRVENVSKTIDGQPVLQNVSFILRPGDKTGIISRNDVTATVLMQLLAGE LEPDSGTINWGVTTSRAAMPKDLNPEFDHPELNILDWLRQFAPQEEQDNTFLRGFLGRML FSGDEVLKQLNVLSGGEKVRSYLAKMMLSKANVLIMDDPTNHLDLESITSLNDALIDFTG SLIFTSHDHQFIQTIADHIIEVGPLGVVDRADTSYDEFMQHETAQAQVAAIYPASEH >gi|225002463|gb|ACIZ01000116.1| GENE 2 2010 - 3686 1211 558 aa, chain + ## HITS:1 COG:SA1853 KEGG:ns NR:ns ## COG: SA1853 COG0249 # Protein_GI_number: 15927623 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Staphylococcus aureus N315 # 14 536 10 530 536 237 29.0 5e-62 MTQPVMILLGVGGFVVAVVLLNLILTGQRQLRLKRDLIANWGKLPVKRGGSERYLKAAYL DHEAQVNHDCQIDDLTWQDLDMFDVFKQLNATQSSVGAERVYAQLRAYNLGKPDVNEALI SFFQTHAEERLKVQLAFAGLGEDVANNSQHYLRTTTQSALPHAWRFKVLGSLPLVGLVLA LVLPAVGVSIIVLSLMVNLFYYVLKREALDAEVTAMGYLVRTIVTAEHLVKIQQPTQDAL RAAVRPMRGITRLAFVFRSRDNSSSDMITEYFSSMFMLGFIAYNNVLTRLYHNHDEALTL WQALGDLELAIAIANFRTAHSQSSQPAFAAGGMTATKIVHPLLKHPVANPVAWNKNALIT GANASGKSTYVKSIAVNAILAQTINTVLAEKLTMQPGLVMTAMAVRDDLSEGDSYFVAEI KAIHRLLRAVASNKRVYGFIDEILKGTNTVERIAASASVINWLSHYPSLVVVATHDNELT DIMGDQCINWHFQEKVTQKDGVVFDYLLHQGPATSHNAIALLATMAYPEPLIKDARQLAA DFERNKAWPKYRQGGIQA >gi|225002463|gb|ACIZ01000116.1| GENE 3 3683 - 4264 561 193 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988990|ref|ZP_01820390.1| hypothetical protein CGSSp6BS73_02415 [Streptococcus pneumoniae SP6-BS73] # 5 192 5 192 192 220 54 9e-57 MTTADKIFEAIRQDPANATFTAQGWDPLYHIEPDATILIASQAPGRKAQTTKTYWNDPSG DRLRTWMGVTKDQFYHSGKIAVLPLDFYYPGKGKSGDLPPRKDFAAKWHPSLLALMPHIQ LTIVIGAYAQKYYLGKRREKTLTATVKNFRAYLPTYFPIVHPSPLNYGWVNRNPWFMAEV VPALQERVARLMK >gi|225002463|gb|ACIZ01000116.1| GENE 4 4438 - 5145 756 235 aa, chain - ## HITS:1 COG:L0015 KEGG:ns NR:ns ## COG: L0015 COG0580 # Protein_GI_number: 15673226 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Lactococcus lactis # 4 234 7 239 245 264 61.0 1e-70 MWTQTLGEFIGTFILVLLGDGVVAGVSLNKSKANGAGWIAITLGWGLAVTMGVYAAAFLG PAHLNPAVTLAFAAIGQFPWAWVMPFVGAQMLGALLGAAVVWLHYYPHWEATNDPATTLG VFATGPAIRNYAANFISEFIGTAVLIFGLLAFTKGKWTDGLNPIGVGILITAIGLSLGGT TGYAINPARDLGPRLAHAILPIAHKGDSDWPYAWVPILGPLAGGVVGALIFTVLP >gi|225002463|gb|ACIZ01000116.1| GENE 5 5160 - 7013 1824 617 aa, chain - ## HITS:1 COG:L0013 KEGG:ns NR:ns ## COG: L0013 COG0578 # Protein_GI_number: 15673227 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Lactococcus lactis # 1 609 1 609 609 703 58.0 0 MAFSKETRTQTIDQLKQTELDLLIVGGGITGAGVAIQAAASGLKTGLIEMQDFAEGTSSR STKLVHGGIRYLKTFDVGVVADTVKERAVVQGIAPHIPRPFPMLLPVYQEAGSTFDMFSI KIAMDLYDRLANVEGSQYANYTVTKDEILQREPHLAADGLQGGGVYLDFVNNDARLVIEN IKEAAELGGLMASRVQAIGVLHDDAGQVNGLQVKDLLDGSVFDIHAKLVINTTGPWSDKF KALDQAEDQTPTLRPTKGVHLVVDGSRLPVPQPTYMDTGLNDGRMFFVVPREGKTYFGTT DTDYHGDFNHPQVEQADVDYLLKVINKRYPQSHITLDDIEASWAGLRPLIANNGSSDYNG GGANTGKVSDDSFEALIRVVDDYEDNQATRADVEHAISRLETAHAEAALSPSQVSRGSSL RQADDGMITLSGGKITDYRKMAAGALALIRRLLAEHFATETRTVDSKKLQVSGGHFDPTN VDDTIAFYTRIGIDAGLPEKDAADLANRFGSNVSRVVTYTDGQAAPGLSLKETMSLRYSI NEEMTLTPVDYLLRRTNAILFHAETLNELKQPVVDEMARLLGWDDATKAQQLADLNQAIR ESQLADLKKTPASTNPA >gi|225002463|gb|ACIZ01000116.1| GENE 6 7078 - 8595 1206 505 aa, chain - ## HITS:1 COG:SPy1684 KEGG:ns NR:ns ## COG: SPy1684 COG0554 # Protein_GI_number: 15675545 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 3 505 2 504 508 733 69.0 0 MTNEQQYILAIDEGTTSTRTIIIDHNGQKVADAQREFPQYFPHPGWVEHNANEIWNAALS TIATAFIESHIQPRQIVGIGITNQRETTVVWDKQTGLPIYNAIVWQSRQTSDIADQLKAD GYADLVHDATGLLIDSYFSATKIRWILDHVPGAQERAENGELLFGTIDTWLSWKLSGGAI HVTDYTNASRTMLFNIHKLDWDDEILRILNIPKQMLPEVRSNSEIYGDAAAYHFFGSTVP IAGMVGDQQAALFGQLAIEPGMVKNTYGTGAFIVMNTGDKPTLSNHNLLTTIGYGLNGKI TYALEGSVFVAGSAIQWLRDAMKLIERSSDSEAAARASKSQNEVYVVPAFTGLGAPYWDS DARGAIFGITRGTTREDFIKATLQSLAYQSRDVVDTMNKDTGMPIPALRVDGGAANNDYL MQFQADILGIPIERAANLETTAMGAAFFAGLATGFWNSTDELQSIVKVGKHFEPTMDVSD RESLYEGWKQAVAATQQYKHTSKQD >gi|225002463|gb|ACIZ01000116.1| GENE 7 8802 - 9530 600 242 aa, chain - ## HITS:1 COG:alr3071 KEGG:ns NR:ns ## COG: alr3071 COG0463 # Protein_GI_number: 17230563 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 3 231 1 224 318 82 26.0 5e-16 MAIPDLTIIVPTYNLGRYLPATLKRIQQQTIDVELWLIDDASTDETAETAAAFVNGIPNY HATAFSHHQGIGAARNFGIDHATGRFLAFVDGDDLIAPTFAATLLRGFTPGVVATAVGYD WWQRNRGGPDQFQLLSQAAMFEQVSHHGTEIGGYIWNKAFPRASLNAGHIRYDERLQIAE DYYFTADFVAHTPGMYAYNPTILYTKVNRPDSTMHRFSPADRRQEIQIFERILELKKLIQ PD >gi|225002463|gb|ACIZ01000116.1| GENE 8 9508 - 9627 85 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVKSGIAMMTSLKKMCCYGQYFVRIVNSLLIRLDHYRLI >gi|225002463|gb|ACIZ01000116.1| GENE 9 9972 - 10850 752 292 aa, chain + ## HITS:1 COG:SP1187 KEGG:ns NR:ns ## COG: SP1187 COG3711 # Protein_GI_number: 15901052 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pneumoniae TIGR4 # 1 279 1 278 278 211 38.0 1e-54 MPKIDQIFNNNVALVELDNHSQAVVKGRGIAFQKKRGDVIPAKQIEKIFYLASETSRQNL YFLLRNIPIDVVTTTYEIIDVAQKQFHLKVLDYIYITLSDHIYEAYKRYQNGTYQETMVP DFHIQYPAEYAVANQALQIIAANLGVAFPPSEVKNLALHFINASGEDDNEQAFDKNNEAS LSQLVQRVLKRHRITRSQTNGNYYDRFMIHLQYLIDRLQRVNTDAVAIVPEVANELEQNY PRSYQIASEIFDEIKDQLYRNMSEDERLYFIIHIQRLINEAPAHDQKQGKKS >gi|225002463|gb|ACIZ01000116.1| GENE 10 10900 - 12612 1547 570 aa, chain + ## HITS:1 COG:CAC2964 KEGG:ns NR:ns ## COG: CAC2964 COG1455 # Protein_GI_number: 15896217 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Clostridium acetobutylicum # 4 565 7 553 560 559 50.0 1e-159 MNKVFDKLKPIFEAIAANKYVSAIRDGFIACMPIIIFSSIFMMIAYVPNAWGFYWPKNVT DTLMIAYNYSMGLLALFVAGTTAKNLTDSKNLELPKTNQINPVAVIVASEIAFVILSILP LKTGVDLTYMGTQGLICAYIVGLIVPNIYYVCIKNNVTIKLPPQVPGNISQSFKDLIPMG LSVSAFWLFGVGFKAATGTILPRWIIQVLSPLFQASDSYLGLALIAGAMAFFWFCGVQGP SIVQPAVVPIMIANTAANLQQYQAGQHVSHVLAMNTMDYVMNFGGTGSTLVVAFVMLFAA RSAQLKAVGKAAFIPGTFSVNEPVLFGMPIIMNPMFFIPFLATPIVNVCLFKFFVSVLGM NSMIYTMPWTVPAPIGILVSTGFAPLAFVFVLLTLVLDVLIYFPFIRVYDRTLLAEEKAK EDVIEGQDTAVLAADTVAPQTAEVQVEASEMADEKPAAAHDESFFKNNEIDVLVLCAGGG TSGILANALNKLSKERGLKLSAAARAYGQDMDLIKDMSMVILAPQMESMKDNLKKITDKY GVKLVTTTGRQYIELTNNGDMALDFVESNL >gi|225002463|gb|ACIZ01000116.1| GENE 11 12668 - 14092 1242 474 aa, chain + ## HITS:1 COG:SPy1916 KEGG:ns NR:ns ## COG: SPy1916 COG2723 # Protein_GI_number: 15675725 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pyogenes M1 GAS # 1 472 1 467 468 505 52.0 1e-143 MRKQLPKDFVIGGATAAYQVEGATKEDGKGRVLWDDFLEKQGRFSPDPAADFYHRYDEDL ALAEAYGHQVIRLSIAWSRIFPDGAGAVEPRGVAFYHRLFAACAKHHLIPFVTLHHFDTP ERLHAIGDWLSQEMLEDFVEYARFCFEEFPEIKHWITINEPTSMAVQQYTSGTFPPAETG HFDKTFQAEHNQIVAHARIVNLYKSMGLDGEIGIVHALQTPYPYSDSSEDQHAADLQDAL ENRLYLDGTLAGDYAPKTLALIKEILAANQQPMFKYTDEEMAAIKKAAHQLDFVGVNNYF SKWLRAYHGKSETIHNGDGSKGSSVARLHGIGEEKKPAGIETTDWDWSIYPRGMYDMLMR IHQDYPLVPAIYVTENGIGLKESLPAEVTPNTVIADPKRIDYLKKYLSAVADAIQAGANV KGYFVWSLQDQFSWTNGYSKRYGLFFVDFPTQKRYVKQSAEWLKQVSQTHVIPE >gi|225002463|gb|ACIZ01000116.1| GENE 12 14381 - 14716 446 111 aa, chain + ## HITS:1 COG:SP0476 KEGG:ns NR:ns ## COG: SP0476 COG1447 # Protein_GI_number: 15900391 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 109 1 109 114 99 50.0 2e-21 MATREEISMVGFALVAYAGDARTAALRALNAAEAGDFEGAEAKLDEAQKDINEAHNQQTQ LLSQEAGGAEMDVTFIMVHGQDTLMTTMLLIDQSRYMIRMLKRIKQLEDKQ >gi|225002463|gb|ACIZ01000116.1| GENE 13 15050 - 16216 1140 388 aa, chain + ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 1 388 5 392 392 433 58.0 1e-121 MNSTDVTKGFTEQFGKQAEHTFFAPGRINLIGEHTDYNGGHVFPCAISLGTYAAVGANDD NAFRLYSANFPKVGIIDIPFPDLFQDKRGLWTDYFQGMARVMKTAGINYTHGLNVYINGN LPDGAGLSSSASLEMLVGTILNNLFDGGFAPLDLVKFGVKVENDYIGVNSGIMDQFAIEM GRANQATLLDTNTMKYEYLPVEMGDNVIVIMNTNKRRELTDSKYNERRSECEKALAMLQK GIDVKSLGQLTEDEFDENTYLIYDETLIKRARHAVFENQRTLTAAKALQSGDLKTFGKLV SASGVSLAFDYEVTGIELDTLVTNALKQRGVLGARMTGAGFGGCAIAIVNSADVEDFISN VGKAYTEKIGYDAHFYVADIADGAKQLN >gi|225002463|gb|ACIZ01000116.1| GENE 14 16283 - 17278 1033 331 aa, chain + ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 327 2 328 328 439 64.0 1e-123 MTIAVLGGAGYIGSHTVKQLLADGEDVIVLDNLITGHRKAVDPRARFYQGDIRDYHFLSQ VFSQEKIDGIVHFAAFSIVPESMKDPLKYFDNNTGGMITLLEAMNQFGIKKIVFSSTAAT YGEPKQVPIKETDPQVPTNPYGESKLAMEKIMHWADVAYGLKFVALRYFNVAGAMPDGSI GEDHHPETHLIPIILQVAAGTRTGLQIYGDDYPTKDGTNVRDYVHVVDLADAHVLALKYL NAGNPSSAFNIGSAHGFSNMEILNAARKVTGQKIPATVGPRRAGDPSTLVASSEKARDIL GWKPNYDDIDKIIETAWNWHENHPEGFGDRN >gi|225002463|gb|ACIZ01000116.1| GENE 15 17275 - 18732 1183 485 aa, chain + ## HITS:1 COG:SP1829 KEGG:ns NR:ns ## COG: SP1829 COG4468 # Protein_GI_number: 15901658 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 485 3 488 491 541 54.0 1e-153 MTAISNHIETIIKLNPDYTQMDSVYLTNKLLNLIGDAALELPGDPDPLNNLDLMVKAAQT NGKIADSQAARQILEAQLMDFATPTPSRINQLFWDKYQAGPRAATDWFFALSRANNYIQT RAIAKNLVFPAKTEYGDLEITINLSKPEKDPKDIAAAAHAQSGYPACALCLQTEGYAGRS NFAARTNHRIIRFLLGGKTWGFQYSPYAYFNEHAIFLDAIHEPMVIDQSTFTNLLDIVAM FPDYFVGSNADLPIVGGSMLAHEHYQGGRHTFPMAKAPIETQIEISGHPHVFAGIVKWPM SVIRLVSADREELTNAAEHIRQVWNQYTDEAVNVRAFVEGKPHHTVTPIARRVGSEYQLD LVLRDNQTSEQYPDGIFHPHQDVQHIKKENIGLIEVMGRAILPARLKSELAEVKKYLLGE ANEMKPMHKTWADQLKVAYNWTPENAESQLQEAVGKVFARVLEDAGVFKRDKIGQEAFGR FCHSL >gi|225002463|gb|ACIZ01000116.1| GENE 16 18774 - 19769 783 331 aa, chain + ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 331 1 332 335 249 40.0 6e-66 MTTITDIAKAAGVSIATVSRILNYDATLAVTPETRQRVLKTAEKLAYKPRRRKRVATQTT VALIQWRSEQEELNDLYYLQIQYAIEARAASIGYHVQNLHLEQLNAESVANVQGIIALGK YDAGEVAEIKALGLPIVFVDQNMLAFDCDSVTGDYAGPIAQIIDHFQKVGIDDIGFLGGL ETSRSGREQFQDVRTATFDRVTKAAGIDHAEFRLIGEFTPDSGYRLMRQAIEKLGERLPH AFIIANDTMAVGALRALNEANISVPQRVSVISFNDVAVAKFTTPPLSTVHAATDQMGQTA VELLQARLNDAKRVPRQVNFKSELIMRASSL >gi|225002463|gb|ACIZ01000116.1| GENE 17 19844 - 20854 342 336 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 8 328 9 335 345 136 30 2e-31 MDVSVEQYGQYQGQNLYELTLTNDQGMVVKLLNYGATLEKVLLPEADGLHNMVLSLPTRE DYSKERNFLGGTVGRIVGRIRGHVWQHGDVKVDLPMNEGKNHIHGGDDGLDRQVYNFRTE QTATTASASFTFVDPAGHNGYPGNLKLQVTYTLTNANALQYRVDALSDEETLFNPTNHTY FALDQPATIDETVLTIPADAYKPLDAEHLPDQGWQPVAGTVLDFRNGQKLGDVIHTRADQ ITSERGINHPFLLKNGKALAAKLQTKNHTMTLVTTAPSVVVYTANHFDGTGVAHNIKQFD GVALECQYPPVSGSDLSAITLLPGEPFTLANTWTFE >gi|225002463|gb|ACIZ01000116.1| GENE 18 21189 - 21857 318 222 aa, chain + ## HITS:1 COG:no KEGG:LC705_00630 NR:ns ## KEGG: LC705_00630 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 222 23 244 244 377 99.0 1e-103 MVVWSVVSAIYIWYNWPVNKFDFVPAFLPVFPVLISSRSGVVITNWQPCMAIIVGLTSWY LIRQTRMQKTKSPLFIRLIRHLLPVWLFMGTCFLLLNHWVPQMGLARFSDFEQLVLILAI FSWQIGLFGSVPLLWAINPYKHGWSANKWMWLYLLTAIVALYMLSHLKFIFGGHFMSLVA SSDGAIWATFPFWLGWAVGMLLIGLIWFLARYQYHNENNTQG >gi|225002463|gb|ACIZ01000116.1| GENE 19 22230 - 22724 574 164 aa, chain + ## HITS:1 COG:CAC2958 KEGG:ns NR:ns ## COG: CAC2958 COG1762 # Protein_GI_number: 15896211 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Clostridium acetobutylicum # 8 158 7 155 164 124 43.0 6e-29 MADTIEQDLFDSSLVFIEDGTDQDTIFKQVSDKLVALGAVKPDFYQHLSEREKAYPTGID MSVVNPDYPNVAIPHTEGEFVNVRKVVPIRLKQPVEFANMIDPNQKFNVSFLFMILNNDP EGQANVLAQIMDFLTTSSEETLNRLFHAEDTATIHDILATSFKK >gi|225002463|gb|ACIZ01000116.1| GENE 20 22739 - 23047 462 102 aa, chain + ## HITS:1 COG:SP0646 KEGG:ns NR:ns ## COG: SP0646 COG3414 # Protein_GI_number: 15900549 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Streptococcus pneumoniae TIGR4 # 3 101 2 100 101 150 72.0 7e-37 MTVKILAACGAGVNSSHQIKDAIEKEFKKRGYDVQADAVMVKDVNEDMIKNYDIFTPIAK TDLGFTPNIPVINAGPILYRMPAMAKPVYDKIENVIKKENLK >gi|225002463|gb|ACIZ01000116.1| GENE 21 23104 - 24555 1498 483 aa, chain + ## HITS:1 COG:CAC2956 KEGG:ns NR:ns ## COG: CAC2956 COG3775 # Protein_GI_number: 15896209 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Clostridium acetobutylicum # 1 460 1 464 470 547 65.0 1e-155 MQTIIDLANKIFEPIIKLGAAPIMLIVLTVIAFAVGVNFFHALEGGIKLAIAITAISSVI GLLTDTYQPALNAFVKSTGINLSITDLGWAPLATITWGSPYTLFFLAILVIVNLILLFLN RTNTLDVDIFDIWHLSFTGLLAIYFGANLFVATVLVIFIGVLKIINSDLMKPTFNDLLDD WENPMTTTHLNYMMNPVIMVFDKLFDKLFPWLDKYDFDAAKLNEKIGFWGSRFAIGIYLG IFIGLISHQDIKSITTLAFMAATCLELFSIIGSWFIAAVEPLSQGVADFANKRLGGRMLN IGLDWPFLAGRAEIWAAANVLAPIMLLEALVLPGNGILPLGGIIAMGVTPALLVVTRGKI IRMIVIGAIELPLFLWAGTLSAPFITHTARALHASGIPATGLISSSTKEGPIEQFIAVLV GKASKGEMMMILYAALALIAYTALFFWYRHEMMKRNQKYSDEGKEVADDVKFVATHAAAN SAD >gi|225002463|gb|ACIZ01000116.1| GENE 22 24735 - 24962 224 75 aa, chain + ## HITS:1 COG:no KEGG:LGG_00660 NR:ns ## KEGG: LGG_00660 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 8 75 1 68 68 117 98.0 9e-26 MVRAWRYLQRLAFLKSWLVFICVGLVGAELTELATKIDLNVAAYIRLIGYLLTLKVADVI TKKVESNKKTKPRQN >gi|225002463|gb|ACIZ01000116.1| GENE 23 25155 - 25361 255 68 aa, chain - ## HITS:1 COG:no KEGG:LGG_00661 NR:ns ## KEGG: LGG_00661 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 68 1 68 68 112 98.0 3e-24 MTNRKKSYLIWLGIVTLVTILNGIFKNTFTQVAVMVTACYALYQLLKIDNVFDRKKRRAQ RMNQKSTN >gi|225002463|gb|ACIZ01000116.1| GENE 24 25610 - 26635 971 341 aa, chain - ## HITS:1 COG:MT1973 KEGG:ns NR:ns ## COG: MT1973 COG1680 # Protein_GI_number: 15841394 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Mycobacterium tuberculosis CDC1551 # 25 323 63 357 371 94 29.0 2e-19 MVTPEVLKDESPLSRSLQTEHYNGAVAVVSPDKELTADAQGFSHIDMKVPFASHTMSGAG TVTQQFFGVLLMQFVEAGTVKLTDRLSKYIPEYQQAEQITLAQLATMQSGIPDYLTLMAA PFKANAPDTLPAERLALQINQHTGQNMDLAKVLAVVDDLPLNFKPGSKTAYSSTNALLLG EVLDRVTNERPLEAILKAQIYDPLNLTNTKLGTAHAFAESYHWIAGNPNVAGKGNENQAD RGLVTTVADLEKFAQAVLTGQLLTAASWKTIFKAAEAGYGYGWYKLADGWLGNTGSVLGY TGLLGINQAQKKAVVGLTNVLKPQATMDQFFKRIYTAAVKL >gi|225002463|gb|ACIZ01000116.1| GENE 25 26721 - 27401 552 226 aa, chain - ## HITS:1 COG:no KEGG:LC705_00637 NR:ns ## KEGG: LC705_00637 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 226 1 226 226 451 100.0 1e-125 MSTLEKIQALNPDKTIYQLTDSAFSDYGVTYTQYDVSELQQFMDQQVPIPAPTAANRYIP SNPAMEKLPVVQQIGRDVFAGLPIEAGECAGHAEALTAVEFHQGSEVNVFFTDVVMVIGK RGQMHDGQFNAEKDAKLFFVPAGTVVEFFSDTLHYSPCEAHASGFKFIVMLIRGSNQPLP VGYHTDNPLIVKQNKFQVVHASRTDKINQGIKVGVTGKLVTVNHLD >gi|225002463|gb|ACIZ01000116.1| GENE 26 27422 - 28360 988 312 aa, chain - ## HITS:1 COG:SA1995 KEGG:ns NR:ns ## COG: SA1995 COG1105 # Protein_GI_number: 15927773 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Staphylococcus aureus N315 # 1 309 1 307 310 332 52.0 6e-91 MILTVTLNPSIDVSYPLDHLKIDTVNRVKTVRKTAGGKGLNVSRVIHLLDHDITATGFIG GYFGKWLENQLDHDGIAHNFFPIDAETRSSIAVLHDGGKQTEILEAGPTIAPEDASAFLD HFDKLLDQTDLLTISGSMPQGLPEDYYTQMIAHAGAKNVKVLLDTSGATLKSALEAPVKP LLIKPNEEELAGLLNRPVDKTDYATLKQALTDPIFDGVDWIVVSLGSAGAFVKHQDKFYH AAIPKIQVVNPVGSGDSTLAGLAMGIHDGKSDEDIMKTAMTTGMLNTMEAETGFVDPAKF AEYFAKVTIETY >gi|225002463|gb|ACIZ01000116.1| GENE 27 28490 - 29491 1058 333 aa, chain - ## HITS:1 COG:lin0543 KEGG:ns NR:ns ## COG: lin0543 COG3684 # Protein_GI_number: 16799618 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Listeria innocua # 3 329 2 325 338 344 54.0 2e-94 MTVTLTAGQFKHLQKLSDENNVISALAIDQRGSLKKMLAAAANKPADETTIVDFKKAVSE ELTKYASSILLDPEYGLPAAKVRAPQAGLLLSYEKTGYDATEPGRFPDLIDNQSALRIKN EGGDAVKFLLYIDPDEPDSINDRKYAFVERVGAEAKANDLPLFLELVSYDGTLNETGTAA WAKVKPDKVIKITKEFSKPQYNVSVLKVEVPVDQKFVEGFTDEGVTPVYTKEEAAKYYKA QSDATDLPFIFLSAGVSNELFLEELKFAKEAGSTFNGVLCGRATWKPGVKPFAAEGEAAG KQWLETEGKANIDRLNKVLADTATPWTDKVSHE >gi|225002463|gb|ACIZ01000116.1| GENE 28 29524 - 30042 677 172 aa, chain - ## HITS:1 COG:SA1996 KEGG:ns NR:ns ## COG: SA1996 COG0698 # Protein_GI_number: 15927774 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Staphylococcus aureus N315 # 1 172 1 171 171 195 56.0 3e-50 MIIAIGNDHIVTMQKIEISNMLKDMGYTVIDEGTYDTHRTHYPIYGKKVAEDVADGRADL GIVMCGTGIGISTAADKNEGIRAAMCDDVTSAVYAREQLNANVLGIGGAVVGVHLIQDIV KAYLDATYKETPENKKLIDKIDNIAKPNPDQKDNPHFFDAELEKWAEGVYHD >gi|225002463|gb|ACIZ01000116.1| GENE 29 30083 - 30511 532 142 aa, chain - ## HITS:1 COG:SPy1923 KEGG:ns NR:ns ## COG: SPy1923 COG0698 # Protein_GI_number: 15675731 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pyogenes M1 GAS # 1 141 1 141 142 121 47.0 3e-28 MDVIIGADKDGFAMKEQVKKYLEEHQYRVADVTPEPAEDFVESSLAVTKKLLNSDAHKAI MFDRYGVGSAMASNKVKGMVTAVVEEENTAHMTAEHNGAKAIAIGTGITGYDRALVIIQR YLDTEYAGGRHQIRLDMLEKMI >gi|225002463|gb|ACIZ01000116.1| GENE 30 30515 - 31291 642 258 aa, chain - ## HITS:1 COG:SPy1712 KEGG:ns NR:ns ## COG: SPy1712 COG1349 # Protein_GI_number: 15675565 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 256 1 255 256 211 45.0 1e-54 MLKDERLLTIRNLVDRKGIVTVNEIGESLGVSTMTVRRDLEELAERNELVRIHGGAQSTH FKPLTELSRNEKRSIHVNEKRKIAATIADIITSGDTIYIGPGTTNELIAQYLKKPDVRII TNSLPVFQSFQDRADYFSLKLIGGQLRERSGAFIGSLANEMLAHLTTTKAFISVNGIADN HISNASPEEGQTQRIALNNAGMKFVAADHFKLNRQDFYSFYDLDQTDGLITDPGISADDR QHYNTYTHVITDKTKKGE >gi|225002463|gb|ACIZ01000116.1| GENE 31 31742 - 32368 542 208 aa, chain - ## HITS:1 COG:lin2878 KEGG:ns NR:ns ## COG: lin2878 COG0546 # Protein_GI_number: 16801938 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Listeria innocua # 5 202 6 198 203 87 27.0 2e-17 MNTFIFDIDGTLLDNVEGYLYGLQKTLRRHGREIAIEDLTWTNGRAGVDSLKELGFSPAE IPVVHEEWREDSKAFLNHVTWFPNMQKVLTQLSRHYKLGLVTSKDKPQFLEEDKKYHFSP YFETVVVAGEAKRNKPFGDPITLARNRLGGQPDTTVYIGDTPTDAQAAADAKVAFALAGW TTPPSPAVTPRIAVLQQAADLLKLSKLN >gi|225002463|gb|ACIZ01000116.1| GENE 32 32431 - 33555 1040 374 aa, chain + ## HITS:1 COG:L0327 KEGG:ns NR:ns ## COG: L0327 COG0420 # Protein_GI_number: 15673304 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Lactococcus lactis # 1 345 1 363 390 251 39.0 1e-66 MRFLHTADWHIGKKLNDFDLLEDQQAVFEQLVTVAKQQQVDAIVIAGDLYDRALPSEAAV ATLDHMLVTLNRKLNYPLLVISGNHDSAVRLRTGRSWFSATKMYVNTQLAEAFTPVELGD TQFFLLPYFEPFAVRDYFQDATITNVAQAIRPIVAKMKAQFKPDMRHILVSHFFAAGSDH SASETKVNVGGLDAVPIDDLAAFDYVALGHLHNHNALHAEPKIQYSGALLKYAVAEAKQE KGVYIVDTDTMARTFIPLTPQHDLIELKASYAELTDPDFYRQQDRDAYIGVDLTDTQVIP NVMAQLRKIYPRIISLRRENGVTAVKPLKQRQRDLDPLSLLKNFYAEMMQTDLTADQLKW AKAGLGEAESGQKQ >gi|225002463|gb|ACIZ01000116.1| GENE 33 33552 - 36683 2632 1043 aa, chain + ## HITS:1 COG:L152588 KEGG:ns NR:ns ## COG: L152588 COG0419 # Protein_GI_number: 15673303 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Lactococcus lactis # 1 1036 1 1042 1046 305 25.0 5e-82 MKLKQLHMQFFGPYADETVNFEDFRTSPLFLISGPTGSGKTTIFDALVYALYGETSGERD GMQMRSNFASHHDLTKITLTFDHDGKHYRVVRQPQQIQQKKRGDGLTEVKAKALLAIADA DKQVAEYTKKNQVQSQLDAILHLDAKQFRQIVLLPQGDFRRFLDADSNAKEDLLRDLFGT QLIQRWQTAMQAQTKQQGAAIQDQERMLNLLTSQFEFDTPPSDTATMADKLALMHQDVTQ QATTVTNLQTMADQRHQRYQTAQTALQTGKQLAQAFEDRKQTAAALAQLAEQKQTQEDRL KLMERLTWVQEHEAAEQRVQKVARDLTLAKTQLVQTQTAIKTTQQAMNQAQTKLNDLQQQ DSAIEAQKTQLDQLQSVKQQLVAIAAQEKQVAQQTAAVAQAEAASVQAQKKLADDQKKLD QYQTELNQLAVSDLADRAADHKQLVAALKPVAANYQDAHAEAEQLASKLTDTKTLLIQAT NASQSAEQQLNQLQQTQIRQQIAQLAAKLTPGTPCPVCGSVEHPHPAVALDEPLVTEAEV KRATQARQQAAAKETTMQAQVSNLEEQHAAATKKADIAKNSFWAQVSSSIDAVSPQVEQP DILKQLAILEEKAQTAVQALSAAQIRQDALRKAITVGQTVVSADDQEIQATQSALNTAKI EAAKANSALTTMKASLPAGTTDLKTVTEQSHVLTEAIKTHQEQLKTAQRQLSEFDRQLAG LHADERHATDQITTLKKEHQEAEDDFLSAVTDYFGSDGVAKFAAMREKLGQLPLLQQQTQ RYKDDVLKQQTLLAAANKTIGNQPQPALDQLEAQASAAEVEATKAQTAFIEAKQKHDTAQ KLLKQAADILAANQTALAAYADLQTLTAVMNGNGPKKLSLERYVLQAYLQEVLDVANTRL QVLSNQRYQFVLHTDLGTQKIHSGLEIDVYDDQVGERRAVQTLSGGESFIAALSLALALG EVIQQESGGINIDALFVDEGFGSLDTNSLDVAMNALESLEGESRLIGIISHVTELRDNIP DQLQVQPAGTGRSRIRVMHMASA >gi|225002463|gb|ACIZ01000116.1| GENE 34 36952 - 37095 149 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MASLSKEQKKALIAKVEKERQEHPEKKPKKSGFETIDEEAERLENEN Prediction of potential genes in microbial genomes Time: Wed May 25 20:27:15 2011 Seq name: gi|225002462|gb|ACIZ01000117.1| Lactobacillus rhamnosus LMS2-1 contig00150, whole genome shotgun sequence Length of sequence - 14107 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 9, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 279 - 338 3.4 1 1 Tu 1 . + CDS 426 - 902 314 ## COG0071 Molecular chaperone (small heat shock protein) + Term 1045 - 1107 18.2 2 2 Tu 1 . + CDS 1179 - 2297 447 ## PROTEIN SUPPORTED gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 + Prom 2305 - 2364 4.4 3 3 Op 1 . + CDS 2389 - 3180 755 ## COG0657 Esterase/lipase 4 3 Op 2 . + CDS 3177 - 3845 440 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 5 3 Op 3 . + CDS 3842 - 4021 211 ## LGG_00679 hypothetical protein + Prom 4023 - 4082 2.3 6 4 Tu 1 . + CDS 4295 - 4819 601 ## LGG_00680 hypothetical protein - Term 4895 - 4950 -0.6 7 5 Tu 1 . - CDS 5010 - 5831 755 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 8 6 Op 1 . - CDS 5924 - 6985 784 ## LC705_00654 hypothetical protein 9 6 Op 2 . - CDS 6978 - 7811 774 ## LC705_00655 hypothetical protein - Prom 7839 - 7898 5.0 + Prom 7713 - 7772 5.3 10 7 Tu 1 . + CDS 7983 - 8636 617 ## COG2910 Putative NADH-flavin reductase + Term 8650 - 8717 20.2 + Prom 9362 - 9421 5.8 11 8 Tu 1 . + CDS 9461 - 11848 2003 ## COG1472 Beta-glucosidase-related glycosidases + Term 12076 - 12117 9.5 + Prom 12505 - 12564 5.4 12 9 Tu 1 . + CDS 12599 - 13555 954 ## COG2984 ABC-type uncharacterized transport system, periplasmic component + Term 13774 - 13833 4.3 Predicted protein(s) >gi|225002462|gb|ACIZ01000117.1| GENE 1 426 - 902 314 158 aa, chain + ## HITS:1 COG:CAC3714 KEGG:ns NR:ns ## COG: CAC3714 COG0071 # Protein_GI_number: 15896945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Clostridium acetobutylicum # 42 158 35 151 151 94 44.0 8e-20 MANEVMNRRNNELMNDVNDPFFDNLARRFFGPVSDWMDWATPSIASTAVNGLLTDVKETK DAYEVHVDVPGINKDNIKLNYHDGVLSINVHKDDITDHADKNGNVMMSERNYDTMSRSYQ LPNVDDSNIKASYKDGVLNITLPKLTESKESGHNIDIQ >gi|225002462|gb|ACIZ01000117.1| GENE 2 1179 - 2297 447 372 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 [Haemophilus influenzae 7P49H1] # 16 320 9 299 378 176 35 6e-44 MMTNNKLMDWPPEKIAAFQHALLDWYDHHARALPWRQDHDPYHVMVSELMLQQTQVQTVI PYYKRFMAQFPTVEALAAAPEATVLKAWEGLGYYSRARRLQQAAKQIVNDYDGKWPKTAA ELQTLAGIGPYTAGAIASISFGEVVPAIDGNAFRVFARLFKVDADIARPQTRKVFDDLIR PLMPKKRPGDFNQAVMDLGSSYMSASHPDPAHSPVRAFDASFRDGVVQDYPVKTKKPRPV IHRYFALVIRSKAGYLLEQRPGKGMLADLWMFPLIDIADLEATMESEQLDEISARFADLS GMTLTFADLGRPQVQHTFTHQRWQLTLIGADAAAAELKFMPARWVPVEDFGKMALPTVQK KLNRALGLTEPG >gi|225002462|gb|ACIZ01000117.1| GENE 3 2389 - 3180 755 263 aa, chain + ## HITS:1 COG:L141530 KEGG:ns NR:ns ## COG: L141530 COG0657 # Protein_GI_number: 15673289 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Lactococcus lactis # 7 258 2 257 257 164 34.0 1e-40 MTVKVTKDVTYGDAPLQKLDFYEPDKPNGAAVLDIHGGGWFRGEKQKESDMAKRFAALGY HVAVPNYRLAPADFFPAARDDVLAAFSWLRTHAQVENLGVFGSSAGGSLAVDVGLAEGVP TVSWSGIFDIQQWFADHPAVVAQPDTKTDFVKTASAEIDQGGRNDPFYKWFILNYVDADE TKFSRVEPFDRLTADAGPLYLANSQAEIIPVSGIYRLAQAAAKVGVPVTLQVIPGGQHAE GYLSAAWPGTVAFLAQHLVKGSI >gi|225002462|gb|ACIZ01000117.1| GENE 4 3177 - 3845 440 222 aa, chain + ## HITS:1 COG:BS_ydeQ KEGG:ns NR:ns ## COG: BS_ydeQ COG2249 # Protein_GI_number: 16077597 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Bacillus subtilis # 1 188 4 193 197 102 34.0 7e-22 MKTLVIVSHPDIEKSNTQQFLKASAATLSQVAWHHLDVNLPFDVPAEQHAIQAADRIVFQ FPLYWYMAPASLHQWLTEVWLKQFVYDAHGGLLRGKSLGLVVSFSQPEAAYQLGGKVGFS LSQFLTPYAALAEKTGLDLLAPLTISQFANQTDMAHQQLLVRYQQYLTLVHPDDPDEQAQ WYIDRLQANPETSMLADQLAAQTDEIDRLRLTLHELKAGESE >gi|225002462|gb|ACIZ01000117.1| GENE 5 3842 - 4021 211 59 aa, chain + ## HITS:1 COG:no KEGG:LGG_00679 NR:ns ## KEGG: LGG_00679 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 59 1 59 59 73 100.0 3e-12 MTTDEQWLIETAAQHQKDAASYENAAFFAALQTFVAKQAERREQYEAEIDGRSWNHEQW >gi|225002462|gb|ACIZ01000117.1| GENE 6 4295 - 4819 601 174 aa, chain + ## HITS:1 COG:no KEGG:LGG_00680 NR:ns ## KEGG: LGG_00680 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 174 1 174 174 275 100.0 4e-73 MQAMFDRLQRWSWLRGLLMILIGGWILIDPHQVYRSFLWIVAAVLIIAAIPKLIDGFSAH KSSGTYGTSLFAGGFYLLLALLIPAIVKPLMSLGPLIIGIILMIYGVNKIIGARQQQQYV NVSPWSTIIYGVALLIIGFIMAINPFKTVMMVFALFGGVLVVMGILQLFTKKSD >gi|225002462|gb|ACIZ01000117.1| GENE 7 5010 - 5831 755 273 aa, chain - ## HITS:1 COG:L0200 KEGG:ns NR:ns ## COG: L0200 COG0351 # Protein_GI_number: 15673245 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Lactococcus lactis # 7 264 6 261 267 212 44.0 6e-55 MANEFPQVMTIGGTDSDGSAGVQADLHSFFMRGVYGATVLTAAVAGNSYGIQDSMVMPLP FIDAQFKSLAADLKIKAAKTGMLADKALVQAIIKNWQQYDFGALVVDPVIITKHGAMLLE QDAYDAVKNELIPLATVVTPNHYEAEHLTGMKLDTDADTEAAAHQLQASGAKNVVLKGAH DDPTQKEVRDFVLLESGKSFWLSEPYHDTDRVNGTGDTLSAVITAEIGKGNDVEDAIRIA KRFTNQAIGHPIPVGHKYGPINHWANQIVYPQQ >gi|225002462|gb|ACIZ01000117.1| GENE 8 5924 - 6985 784 353 aa, chain - ## HITS:1 COG:no KEGG:LC705_00654 NR:ns ## KEGG: LC705_00654 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 353 1 353 353 672 100.0 0 MLNLNDTHLAALIAKPLNVSQLRQQISTAYQTEADRLADSPLWGSNDDALTALLASYTGL MRDKLYQTLQNIAAIPTNFLQTLWFKDTTSDPHHSEITLIQATEEDNQPLLTIVDPLSPS ATLKAVNLPTLLQITASDSNALPYDADEIKALSALTKALNQGGYQFATIDETVLQPINGL HFKTRFDNLKPLVAKKTVVKAGEFSIQTNLDRDSKVLDYQVLDEDGHDWKDLGSEEVKGD RFEWASTTIPEELVNHHLKLVVRVSAGTNSPALDELFVIASSNAILMRQGSHQGVYELPL PNQKLFTVMVNPDNNMIYLKYPDPETQVIELNRQYPFIGEWLKAVLPQKRAFN >gi|225002462|gb|ACIZ01000117.1| GENE 9 6978 - 7811 774 277 aa, chain - ## HITS:1 COG:no KEGG:LC705_00655 NR:ns ## KEGG: LC705_00655 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 277 1 277 277 510 100.0 1e-143 MSIETSLTYQKKFFSDFTDAWHKKSRYRLYQGIDATAENLRLDIEEAPGYILAYDKSAQA ELHDFLQIGFIDFLRQHIPFFEVNDQGTIYFGNWYHRRDFGHINVILRAITQSTDEQRKI LPQLEAFSDDPDHYLDRQLDAMRKEVYHDVDSLHTQIDNLEAEAAPERDQSAQGNGGFRG LLKNFIDPSDESDAPAAHASKTDASQLKARFDKEKLAADDAFDKRKRELEVSAAITRYEY QAVLSTYSSVAEFENVLANLKDDFMQSLKLEGGRTHA >gi|225002462|gb|ACIZ01000117.1| GENE 10 7983 - 8636 617 217 aa, chain + ## HITS:1 COG:BS_ywnB KEGG:ns NR:ns ## COG: BS_ywnB COG2910 # Protein_GI_number: 16080715 # Func_class: R General function prediction only # Function: Putative NADH-flavin reductase # Organism: Bacillus subtilis # 1 212 1 208 213 118 36.0 6e-27 MKIAVLGATGRAGSAIVAEARKRGHDVLAVVRDPQKAARRLGQTVPTLVKAPLDLSEADL DGVDAVVDALSVPWGSGRGYLHLDFATHLISLLRNADTLAVFILGSASLAMPGADHPMIL DFPESAASQPWYDGAKFQYDEYRFLQMTDNVKWIGISASEAFPSGPATGYIAGKDTLLVG EDGQSHITTGNMALAILDQLEQPTALQDRITVRDVDE >gi|225002462|gb|ACIZ01000117.1| GENE 11 9461 - 11848 2003 795 aa, chain + ## HITS:1 COG:YPO2803 KEGG:ns NR:ns ## COG: YPO2803 COG1472 # Protein_GI_number: 16123001 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Yersinia pestis # 13 663 38 711 793 415 38.0 1e-115 MDNSASNINVDQLTTEEKMKLTSGKDFWASEALPDHKIPSIRMSDGPHGLRYQAAAADHL GINDSVPSTSFPTASASAATWDPELIAAMGAAIGLEAQSLGVDVVLGPGVNMKRNPLCGR NFEYFSEDPYLAGKLGAAWIQGMQKQGIAACLKHFAANNQENGRLSSDSMIDPVALHEIY LEAFRIAVTEGHPESVMCSYNKVNGTYTSDNRYLMTNVLRDQFGFDGAVITDWGALNDKV AALNAGTDLEMPGDDHLFDDEALKALQSGELQSASLDRAAANIIKMARKHRPSFHGTREA LLHQNAQLAQKIAENAIVLLKNDDHILPLKTSESLAVVGEMAKETRFQGAGSSHIQAAEQ VSILTGIKQAGLTYDFAAGYRLDDEVDQEKTAQALELARTHDKVIFVAGLPDNYESEGFD RKNMALPKVQNDLLQAIAAINPHVIVLLVAGAPVEMPWLDQVQAILNLYLGGEHIGTATA RVLTGQVNPSGKLAETYPKRYQDVVSAEIYDKHTRAVPYVESSYIGYRYFDKAKVPVAFP FGFGLSYTTFAIKHVRLVNDEVTDAQPVTVQLDVTNTGDMDGAEVIQAYVKEQQPRPLRP EKALKAFKKVFIKAGETVAVQLELPAQAFKEWQEKTQTWVLPAAAKSVAIGTSAADIVAT LPVHLNGTNVTNFKNIPDWYTTLSGKPTVHDFEQLTGQKVPPHHEFVPGEFTRLNTPREM QKHSWIVRTVTRITVRMRTKDYLDKEGPEAKFQQAIVLDTPLIRLAQQASGILKLSMVDR LVAAANHQYLKMIFG >gi|225002462|gb|ACIZ01000117.1| GENE 12 12599 - 13555 954 318 aa, chain + ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 2 314 14 331 344 176 33.0 7e-44 MKKHLVLTLAATVLIGLTLIGCGKKSSAASSRTVKVGILQLMDQTALTEARKGFESELAK AGYSGKRIKLDYVNAQGDQANLKTMSDRLARDKNDVNLAIATPAAQALQKADKKTPLLFT AITDPKSAGLVTNLEKPDKNATGVTDLVAVADQINLLHQTFPQAKTIGLMYNASEPNSVY QIKHAKARLKQLGLRYQIRTAATTNDVQQAAESLAKDVDALYLPADNVMAAAMPTIGKVA KAHQIPVVPAASTMVKDGGTITKGIDYRDLGKQTAKMAIKLLKGTAVKKLSVEKPAKVET VKNETMLKNIKQTVHLPK Prediction of potential genes in microbial genomes Time: Wed May 25 20:27:33 2011 Seq name: gi|225002461|gb|ACIZ01000118.1| Lactobacillus rhamnosus LMS2-1 contig00151, whole genome shotgun sequence Length of sequence - 10901 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 3, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 + CDS 21 - 986 1089 ## COG2984 ABC-type uncharacterized transport system, periplasmic component 2 1 Op 2 13/0.000 + CDS 1015 - 1986 891 ## COG4120 ABC-type uncharacterized transport system, permease component 3 1 Op 3 . + CDS 1988 - 2791 238 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 2807 - 2860 14.1 - Term 2795 - 2848 14.1 4 2 Op 1 . - CDS 2882 - 3841 778 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 3914 - 3973 2.5 5 2 Op 2 . - CDS 3984 - 6650 1889 ## COG0474 Cation transport ATPase - Prom 6846 - 6905 6.4 - Term 7041 - 7080 3.5 6 3 Op 1 4/0.000 - CDS 7112 - 8089 734 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 7 3 Op 2 . - CDS 8120 - 10318 1159 ## COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family 8 3 Op 3 . - CDS 10305 - 10712 387 ## LSEI_0710 GtcA family membrane protein - Prom 10750 - 10809 4.6 Predicted protein(s) >gi|225002461|gb|ACIZ01000118.1| GENE 1 21 - 986 1089 321 aa, chain + ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 320 19 339 344 181 35.0 2e-45 MIKKMAAVVAAALTVVALAGCGKSTSAAADKSQVKVGVLQLIDQQALTAARKGFTEELAK AGYKGKKIKLDYVNAQGDQSNLQTMSQRLKRDKNDVNLAIATPAAQALHKEDATTPMLFT AVTDPKAAGLVSNPSKPDKNATGVTDKVDVAGQISFIHKVFPKAKKIGLLFNAAEENSQV QVKLAKAAIKKLGLTSVEKTAATTNDVEQSATALMKQSDVIYIPTDNTMAASMATIGKVS TKEKVPVVPADATMVKLAGVATVGINYEDLGKQTGKLAVKLLKGKQVKDLAVETPAKTRL VTNPKRMQQFGLTEAMLKQAE >gi|225002461|gb|ACIZ01000118.1| GENE 2 1015 - 1986 891 323 aa, chain + ## HITS:1 COG:SPy1018 KEGG:ns NR:ns ## COG: SPy1018 COG4120 # Protein_GI_number: 15675019 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 3 286 1 283 289 211 44.0 2e-54 MDIVTSSIAQGLLWSVMAIGVYLTFRILDIADMTAEGSFPLGAAITAQAIVSGVGPIAAT LLGFAGGAAAGAVSGFLTTKLHIPDLLTGILTMTGLYSVNLFIMGKANVSLIGAVKTVFN LTDSGDATTTGIIVGAIVVAIVIGALVFFFHTEMGLAAAAVGNNQNMAAANGINNDAMKI IIYMLSNGLIALSGSLMAQTNGYADLSMGIGTIVIALAAIIISEILVRGVPLWARLLMII VGAVIYRLIIAVVLDMGVDPNYLRFFYALMLTIFLSLPLLKKKLFQVKVRHSNRQQVKSD QRMVAKTSDHMTIAPAEQQKEVH >gi|225002461|gb|ACIZ01000118.1| GENE 3 1988 - 2791 238 267 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 230 1 217 245 96 33 9e-20 MAVLDVRGLHQYFEQGTVNENHALKGIDLSLERGEFVAIIGGNGAGKSTLLNSIAGTLPV NQGQILINGKDVTYQNVAKRAKLIARVFQDPRSGTASLLTIEQNLALAEKRGEWRNFWAG GVKRRDRQHFQEKLATLGLGLEKRLGAEMGLLSGGQRQAVTLLMATLKKPALLLLDEHTA ALDPQTSATVMALTDQMVRAQQITTLMITHNMASALKYGDRLIMLDHGEIAVDVRGEEKR HLTVEDLLTLFKERSGQEFADDAVLLS >gi|225002461|gb|ACIZ01000118.1| GENE 4 2882 - 3841 778 319 aa, chain - ## HITS:1 COG:SAP008 KEGG:ns NR:ns ## COG: SAP008 COG0604 # Protein_GI_number: 16119208 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 24 284 26 284 323 236 43.0 3e-62 MQPFQALLHDGQQATLQTMTTDDLPAGELLIKVAYSDVNYKDALAYQPQNQVVRQFPQIL GIDLSGTVVASHDAQFKKGDQIIVTGHGLGVSQGGGYAEYARVPAQWALPLPKNLTLETA MAFGTAGLTAALCVTALMHAGMTPERQPLILVGGATGGVGSIALRLLANAGFSNRVALVR TPDQQQQVRALGATATLALDELPKGKALARQQFDFAIDPLGGSFTTSLLPSMRYGGAVAL CGNAAGASLPLTVFPFILRNISLIGIDSVSAPTALRQAAWTALAKLAPVPYQTVNLSDLP HVLNKHFTHHALRTVVKIS >gi|225002461|gb|ACIZ01000118.1| GENE 5 3984 - 6650 1889 888 aa, chain - ## HITS:1 COG:lin0814 KEGG:ns NR:ns ## COG: lin0814 COG0474 # Protein_GI_number: 16799888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 17 876 11 876 876 736 49.0 0 MPTPTTKDLTLLTPSDLAADFDTDLTTGLTTNAAAKRRQEDGPNQLTAAKKPSLWRQIGH HLSDITSLILLFAVALSAYLALTTDSDWTKTIVIGSIVILNVAIALYQEHSAEKALAALK AMTVQTVTVVREGKTQTIAAADLVRGDLMLLKAGDAVAADARLIHSQDLETDEAVLTGES SAVAKSAAPLTEVPDDLGDAVNRLFSGTAITSGKASAIVTATGMKTELGKIASLLNQTQK QATPLAKRLNALGKRLSLVAILGGALTMLLSMLYHQETLTESLMLGVSLAIAAVPETLPV IVTLSLAHGVQKMAKRHAIIRQVTAVETIGNINVIASDKTGTLTQNQMTVTHFWPFGETL QKVTDQPLSTNQQQFLTYLGLATNARLTKQGEPDIGDATELAIVRLLAHYDLNRDDLETC YPRIAESPFSSDKKTMATLHKTPDGHFLAIIKGAADRIAFSNDHWHEEATAIHDQMTAQA LRVLAAGYQQFENDPGANWETQLTAVQPLGLIGLIDPPRPEVPAAIQAAKDAGIITVMIT GDHLDTATAIAKDIGILDHGQRAITGHDLSQMSDEALAADIQQIRVFARTTPTDKIRIVK AWQQQQAVVAMTGDGVNDAPALKAADVGIAMGITGTDVAKNAADMVLTDDNFATIIDAVA QGRTVYQNILKAVEFLISVNFAQIFTMLIAVLIGWGAIMTPEQLLIVNVLADGIPGFFLS RELAEPGIMRLKPIPKKASIFTSGLGKRVAVRTTTYVGLILGVYALGRFGLSANQPIVGM TMLFLTLAIGSMLDIFPIKTRGRLNRAAFTVNPILTGSLLGTITLILLLATVAPLQQVFR LAPLNLGQWLIVLAVIWLPMLVVEGYKRRQHRNELAAWQPSELIGDAE >gi|225002461|gb|ACIZ01000118.1| GENE 6 7112 - 8089 734 325 aa, chain - ## HITS:1 COG:BS_ykcC KEGG:ns NR:ns ## COG: BS_ykcC COG0463 # Protein_GI_number: 16078354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 10 311 8 314 323 311 49.0 7e-85 MRQKTNPFISVVLPVYNESAGIGETLTELANYVRARPERYELIFVNDGSTDDSATQIKAA MAKNPTIRLVDFSRNFGHQLAITAGIRYASGDAVVVMDADLQDPPSVIPAMIARWQEGYD VVYGKRRKRSGETWFKKVTAETFYRVLKALTSVDIPVDTGDFRLMDRSVVNVLKQMNEHD PYVRGMVAWVGYRQIAVEYDRQKRTAGETHYPLKKMLHLAMNGITSFSTVPLTIANWLSG FFLLLAVAIVGISFFLGHLSLLTWVIATTLLVGAGITFSIGLLGNYIGRMFAQSRHRPLY IVADTYGFKTQTTQQQNYRYHALQN >gi|225002461|gb|ACIZ01000118.1| GENE 7 8120 - 10318 1159 732 aa, chain - ## HITS:1 COG:BS_yycA KEGG:ns NR:ns ## COG: BS_yycA COG1807 # Protein_GI_number: 16081101 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family # Organism: Bacillus subtilis # 25 724 22 682 685 483 43.0 1e-136 MKKIKQWTLDWWLIGILVLAAFLYSWNIWEAGNANDYYTAAITSMIQSWHNFWYGAFDPA GFITVDKPPVALWFMAISAKIFGVHGWSVVLPSILFGIGSVALIYNMIKPRFNVWAARLA ALALTLTPIVVADSRTNNMDATLQFFLLLASWCLMKAITNRKPWLVVMSFALIGVSFNIK MLQAFMILPALLLFFWLASKQQLWRRLATLGIALAAMAVMTLAWPLQVDSTAASQRPYVG SSQTNSEMELAFGYNGTERLLGQTTGTGAAFPGMGNSKTKATGEMNPTSGATKGNNSKTG TAPTGTKGNPPTGTKGTTGTPPGGNGGGRPGNGQGQGGTPPAGTNGKQPTVKTKSGTSTN NAPANFAEGNFKGGRGTGGGAAGGRGGGAFSIGNAGPLRLLQSDLGPQISWLAPMAIIGF ISAFAYYLDRKRKWYQTTSQQNHLLFWLGWLVPVAGFFSIASFFHPYYTIMLAPPLAALF GIGTVTMFNQFKLSFKHWQSWLLPLALAATTALQTWYVSLYYQWQPILVVIAGVIGLALL FIARTKTWRKSALGVAIAAILAAPGFWSLTPTLAGSSSGIPTAGPTLLTSGGNSGGIGSG SVNSGLLKYVEAHQGNAKYLFATSNASTAAPYIIKSGKAVMAIGGFNGTDPAITLKQFKA LVKSGDMKYYLSSGRAGNSKIEAWVEKVGKKVAASKYGSKTTTNAQNNHGGRMAMGGMGS GTLYELDASMVK >gi|225002461|gb|ACIZ01000118.1| GENE 8 10305 - 10712 387 135 aa, chain - ## HITS:1 COG:no KEGG:LSEI_0710 NR:ns ## KEGG: LSEI_0710 # Name: not_defined # Def: GtcA family membrane protein # Organism: L.casei # Pathway: not_defined # 1 135 1 135 135 229 89.0 2e-59 MRQKLKQFIGFGLVGGINTILTYLLYLTLYQLINPTAAMGVGYGLTSVLGLFLNDTWVFK VKDHRDLKSVAPRYYFSYGLTFIMSLILTSFWNDALNLPKPLAPMFALMITVPTNFLLSK FWVFREKGVTAHEKN Prediction of potential genes in microbial genomes Time: Wed May 25 20:27:41 2011 Seq name: gi|225002460|gb|ACIZ01000119.1| Lactobacillus rhamnosus LMS2-1 contig00152, whole genome shotgun sequence Length of sequence - 19625 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 14, operones - 4 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 40/0.000 + CDS 21 - 716 676 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 2 1 Op 2 . + CDS 713 - 2005 920 ## COG0642 Signal transduction histidine kinase + Term 2023 - 2072 5.0 3 2 Tu 1 . - CDS 2148 - 2528 345 ## LGG_00702 hypothetical protein + Prom 2682 - 2741 11.0 4 3 Op 1 . + CDS 2810 - 3469 674 ## COG0778 Nitroreductase 5 3 Op 2 . + CDS 3509 - 4615 1035 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 4627 - 4673 9.2 - Term 4830 - 4873 1.6 6 4 Tu 1 . - CDS 4888 - 7755 2422 ## LC705_00677 hypothetical protein - Prom 7802 - 7861 5.2 7 5 Tu 1 . - CDS 7914 - 8132 75 ## - Prom 8222 - 8281 2.6 + Prom 8115 - 8174 3.9 8 6 Tu 1 . + CDS 8213 - 10018 871 ## LC705_00678 hypothetical protein + Term 10179 - 10234 3.2 - TRNA 10315 - 10387 79.6 # Ala GGC 0 0 - Term 10719 - 10748 0.3 9 7 Tu 1 . - CDS 10881 - 12701 812 ## LC705_00699 transcriptional regulator - Prom 12735 - 12794 2.5 - TRNA 13033 - 13105 79.1 # Ala CGC 0 0 10 8 Op 1 . - CDS 13309 - 14316 637 ## LGG_00708 hypothetical protein 11 8 Op 2 . - CDS 14336 - 14674 183 ## PROTEIN SUPPORTED gi|18309686|ref|NP_561620.1| 30S ribosomal protein - Prom 14764 - 14823 4.1 - Term 14793 - 14833 4.2 12 9 Tu 1 . - CDS 14844 - 15149 266 ## LC705_00702 membrane protein - Prom 15172 - 15231 3.8 + Prom 15104 - 15163 8.3 13 10 Tu 1 . + CDS 15303 - 15602 369 ## LC705_00703 hypothetical protein + Term 15739 - 15767 -0.9 14 11 Tu 1 . - CDS 15635 - 16660 846 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 16684 - 16743 6.6 + Prom 16691 - 16750 5.7 15 12 Tu 1 . + CDS 16871 - 17233 340 ## LSEI_0726 hypothetical protein + Term 17249 - 17304 19.1 - Term 17245 - 17283 1.4 16 13 Op 1 . - CDS 17307 - 17786 322 ## LGG_00714 hypothetical protein 17 13 Op 2 . - CDS 17779 - 18945 943 ## COG0628 Predicted permease - Prom 18965 - 19024 1.9 + Prom 19274 - 19333 6.0 18 14 Tu 1 . + CDS 19391 - 19585 285 ## LGG_00716 hypothetical protein Predicted protein(s) >gi|225002460|gb|ACIZ01000119.1| GENE 1 21 - 716 676 231 aa, chain + ## HITS:1 COG:L0135 KEGG:ns NR:ns ## COG: L0135 COG0745 # Protein_GI_number: 15673657 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Lactococcus lactis # 6 225 6 225 225 242 56.0 4e-64 MIVKPKILVIEDDPDLNESIVDFVRDFSQPEAALTGADGLYLAEEGIFDAIVLDIMLPEL NGFDLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLK RTGHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFD RLWGFDSDTAVSVVEVYMSNLRKKLKPMQADVWIKTIRNVGYIFQEPEDRA >gi|225002460|gb|ACIZ01000119.1| GENE 2 713 - 2005 920 430 aa, chain + ## HITS:1 COG:L0134 KEGG:ns NR:ns ## COG: L0134 COG0642 # Protein_GI_number: 15673656 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 6 423 12 440 456 198 32.0 1e-50 MNADKGIKRQQRRLFIGQLLSFAGLFLVLGVIVFFLYERSIYQDIDHSLEQQKIMLTKPA QTMSGAGGPGRPVTSRPVPFRMNMVVFNKKGKIINQAMLGERFYAYFKTLKLDRQAVNKL QNLPTSNGTFRTLLVKVPVTAADPQYAGHYVLILQNTDAQEAAIRSFRQVLILTIILFWA LALGLSYWLSTRSMRPIVRSWQRQQDFVADAAHELRAPLAVIQSKQEALLTKPQATIIDE SEAIATSLGETKRLRQLTDDLLTIAKADSNTIEIELTDLRFDQTLAPQLASYHDIAISQD KSFTTTIPPKSHAWFDAARIKQLLVILLDNAFKYTQAGDSIWVKVTQTSKEWQLVVGNSG PSIADADKSRIFERFYREDASRSRKTGGSGLGLAIARWIVTIHHGHIEVKDVHPHGAAFV VTLPNKPRGI >gi|225002460|gb|ACIZ01000119.1| GENE 3 2148 - 2528 345 126 aa, chain - ## HITS:1 COG:no KEGG:LGG_00702 NR:ns ## KEGG: LGG_00702 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 126 1 126 126 238 100.0 4e-62 MQIHFDEGAVNKIQPHLGSDKKLLLTFEDGVGPYSQHAMIHMQVQFSLNVVKASDPATDY DTEISSNLGPILIKGYSQEDLNANMHVHFNSTLNTLVLSGDGGDIDTNMGFIDFTQANGV RNNPAR >gi|225002460|gb|ACIZ01000119.1| GENE 4 2810 - 3469 674 219 aa, chain + ## HITS:1 COG:BH3859 KEGG:ns NR:ns ## COG: BH3859 COG0778 # Protein_GI_number: 15616421 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus halodurans # 9 214 4 208 212 164 41.0 1e-40 MTETVAPNKLTNNDLAKVMFDRHSVRKFDPTVKISRDELQDMIREATTAPSACNLQSWHF VIIDTSEGKEKLKKAAMKFNYPQIDTSSAIIFVAGDTQSHEVYRDVWTKVYEAGKISKEK LDQIFNTFLPLYEHASPEFLTLDATIDGAMVAMQLLLLARAYGYDANPWSGYDFKTIIPT LGLDPKRFVPVMAVAIGKAAEQPLQTERYDVKQLIDYLD >gi|225002460|gb|ACIZ01000119.1| GENE 5 3509 - 4615 1035 368 aa, chain + ## HITS:1 COG:L78730 KEGG:ns NR:ns ## COG: L78730 COG1304 # Protein_GI_number: 15673234 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Lactococcus lactis # 15 360 28 378 383 312 46.0 7e-85 MVDAVKADPFGKVNAIDVLDLASLEARAEKVLGRGEFGYISEGSDDGYTMHRNTTAFQDV HMLPRVLQGVENPDQSTTFMGAKLASPLLTAPIASNTLAHPSGELGLAKGAKEAGIMMSQ STFASKTIAETAAVSDGAPYMFQLYMPKDWEYCQYLLDEAKQAGALAIILTADSTLGGYR EKDVMNHYHLKGRLANLEGYNTGQSGVGAGGLFKESMQKLDLGLISKLASYSGLPIIIKG IQHPADAVAAITAGAAGIYVSNHGGRQLDGAPGAIEQLPAIAAAVDHRVPIIFDGGVQRG THVLKALALGADLVGIGRPFSYGLALGGWQGVKDVADHLKMEINIAMQLTGCQTMADVKQ MKVKTTFA >gi|225002460|gb|ACIZ01000119.1| GENE 6 4888 - 7755 2422 955 aa, chain - ## HITS:1 COG:no KEGG:LC705_00677 NR:ns ## KEGG: LC705_00677 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 955 1 955 955 939 100.0 0 MNKHNSLLTTTVATAAVLTVAGGVTTVHADDQTPTSSATSKTAQSAADTSAKTPVESAQQ GVKDAQGNVDAAQKAKDDASKNAADTTEKQSAAQQKVDAAQAAKEAAQSVAASSAAAAES AATQTSAAQSAADAATPEAKQSAATAVSDAKAEQEAAQSTVNLATSQQAKDQAAQSAASS AAQSAANATAQEQSKVNVTKQATSDAAKALDTTAAKTAVDQASTSLAAAKSALSKAQAEA DQAQTAQAATDQLVSAAKSSLDHQATTTSSAKDALAQATAKSTAAKAKVAEAQKAVTDAQ AALDAAQAKTNIDLAAEGITVTVSDNAKATAKELVASKSRDGNYIHSHLATIAKGISISY KPTDADWSEELPYTNTGTDYKGRTIGISSINFAAPSGAYDSLTSAQKSHIEDLYLAIFNR IRTQLGMPPIINSNSVNGTTKVAVIGPSDIAGGSFLYSRAFYPTKKSDGTVAWLDDPPTN PLTQYNMAILKDNVFNNSVLSSFLSKSGDTSDGTLAASNLQPLLGFNRVGESSKTLADTV TIARSGQLLFLTVNVATVNDDATFNTSTDTKALSTALKNAQTQLASSQADLATANATQAA AQSAFDQANGEQTKAQANYNDAVQDQKAASVKKTSADNKVAVNKVAVTNAETALATAQKI YEASLQDQPAKIAALNAAKTAQAEAEKQLSLAKSAQATAEASLEAAQNQLKKDQDATADA KAKLAKAEQAVTDAKAKLDQLNHAQDRLIKAKEAQAKADAGVAKAKAAVVAAEKNLSEKQ AVLADAKAKAATAKNKLAEATASLTAAQQQLKTAKSVLKAAQDAETLADNVTRQQHQLES KADALKHGYHINGQQVLDQNGHPVSGWSVVNGQMVDPYGNIIKIAQTQTTPGTKTAAPVT KPLAAKASVNSNGRHSFPQTGENQVITVWMMLLGFAMTALSMLGFESHRKYRHQR >gi|225002460|gb|ACIZ01000119.1| GENE 7 7914 - 8132 75 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNDHELTNLNFQSCNLKRTESLYLILKATWFFCVIFKTVLLHTTLSLPNLLGRTRNLIVL AQRITKAIRTFY >gi|225002460|gb|ACIZ01000119.1| GENE 8 8213 - 10018 871 601 aa, chain + ## HITS:1 COG:no KEGG:LC705_00678 NR:ns ## KEGG: LC705_00678 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 79 601 1 523 523 1068 100.0 0 MDENFELKRLGKFFKDFRTGRDLTLKEAAGEDWSATTLSRFENGVSDISNEKATGLIRRI GIQPQDFLLYPEAPGAFPMHLQTLIQINDINALTKRRAEFFLENKKTTSMTKLASVLFDA GIHWPEAKYHFDAEAEQIIADRLTIPENLTPFEWEIQEAIMGPASHELLMLLWYRTDRMK HNLRKEERGTILAKLWLGALMDRDVEFLDTFRSDLTEEMDKYGELESYTEWQEVWHFTKL LEQWVVSQNVAHEKQIDDMITDTQLMGDISQAKYFTLIFARTRQGHPYHNYELKNPDPMP IVVRKTAGGVILGRRRYLGLHLDDIVLGRNKSTLRRFEKAESQLSFGGLVQLSGQMAVLV PTLLGSMNVTLQGQNRNITLWFSWYDMVSLKARGKDVASAQDVINRTMKFMKDVPAKIRQ GQLFVLQRAAMEVGFNHFDESEQRTVASKLLKQLLKSNHWGLFEYLILRYICPLLAFDDL SLLFQHVQRILSKQPGFFGRSYAYGAMSLAFVCAVKTKSSDEVVNFIQGLGWINDIDEAD GSRWMAMGSREIALDLIQKTETSKNAVKQFIVRCQNTGHHKVLADLKDYWRELVPNDYFK I >gi|225002460|gb|ACIZ01000119.1| GENE 9 10881 - 12701 812 606 aa, chain - ## HITS:1 COG:no KEGG:LC705_00699 NR:ns ## KEGG: LC705_00699 # Name: not_defined # Def: transcriptional regulator # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 606 1 606 606 1192 100.0 0 MKTNKSGSVLEALGSFFRSQRIARGLTLQEVSSNWSAATLSRFERGEIDISTDKMLSLMT KIGIDELDFLEFYESIPANFPLQLQDLTQLNDIAILEARKRGFFAAHPHINSMTELARLM FAAAENWPNPQFRFSSEDEQLLADRLATPERFTILELELYKAIAGPASHELLSLLWHRAQ RIPDNWRQPREMIELLLWLGALMDQDMELVNDMESELAEWYVADSVRDRIIEFMPNWQYG RSVANWLRTPTNQNKAKIQAIISILKKYDVMTDARWFEMMLVRTQSGSVYHNTQLIDHPR KLTEAHTAQEVVKRQRLYLGLKITDINLNVSPTTLRRFENGQTQLAASCLFQLCGELALL PSQILSSLDPTSDNVLGKISLKQTFKQVQQATALNEDKHLVANLIHQFTTQFSDIPANTL NMQLFVLKSASGLVSANDPTMLRQAPILLSRLLQNNHWGALETHTSQELVNWLNPEQLTM LFQKGNHVVVKHPLTVGINYVFSGLNQAIIRVILHYSSKELSAFLQSFRWLLTSTDPSPE RWEALGSWYLGRYLLDPSKANADQVELYVHESLRIGHPNAITNLKSFNIKHLPKGFIDKF VSSYKD >gi|225002460|gb|ACIZ01000119.1| GENE 10 13309 - 14316 637 335 aa, chain - ## HITS:1 COG:no KEGG:LGG_00708 NR:ns ## KEGG: LGG_00708 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 335 1 335 335 652 97.0 0 MDTIKTYLDSLFASLPDNAKTQQAKTDMLANMRDYYRDLLRDGKSEEEAIGAVISAFGSL DELRADLGLPVQSDPNRAEAAADDDAITESELRHFWQSVDHFATQIALGVLLCCISVALP AYAGTSRYEVFGVIGMFLLDAIAVGLFIWAGTTYSQQKKLLNDRPITKSAKHLAQQETAA YSRQFSAGLIVGIMICICSLIPAILSEYISHFISDDAGGALFLIIAGLGTYLILYVSINY SQLKRYTYATTVPNSAPEPHDEHTSSWSAAKHHHNQRARQDIALFRQVYWPLILVTYFLA STLFDTWSYSWLIFVIGGVLQNVFIALITRRAESR >gi|225002460|gb|ACIZ01000119.1| GENE 11 14336 - 14674 183 112 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|18309686|ref|NP_561620.1| 30S ribosomal protein [Clostridium perfringens str. 13] # 2 105 3 107 110 75 33 3e-13 MISSDAMRGYNDVLILAILHQGDSYGYKIGKEIRERTSGQYIIRETTLYAAFNRLSKNGY IEAYPGAVTNGKPRTYYRITSSGQTFLAVKAAEWRRVKTVVDLFLNQPLTDL >gi|225002460|gb|ACIZ01000119.1| GENE 12 14844 - 15149 266 101 aa, chain - ## HITS:1 COG:no KEGG:LC705_00702 NR:ns ## KEGG: LC705_00702 # Name: ygbF # Def: membrane protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 101 1 101 101 193 100.0 2e-48 MRVDTGKYPDGVDPARIKRLKLLSKLATFTCILMYVSYIPEIIANFSGSPVNPIQPLVAM VNATLWTCYGWLKTYKDWPIIISNMPGILFGLVTFVTVFVH >gi|225002460|gb|ACIZ01000119.1| GENE 13 15303 - 15602 369 99 aa, chain + ## HITS:1 COG:no KEGG:LC705_00703 NR:ns ## KEGG: LC705_00703 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 99 1 99 99 188 100.0 4e-47 MADKETDMVTRIQKQEGADAIMDKGFVTERDIPEMMDKTWSGKLLDAINDELRLRTVINR AVMQQFHYYMGDGTIIYDPGQLNSEGAKIALQHALGFRK >gi|225002460|gb|ACIZ01000119.1| GENE 14 15635 - 16660 846 341 aa, chain - ## HITS:1 COG:L123116 KEGG:ns NR:ns ## COG: L123116 COG0604 # Protein_GI_number: 15672699 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Lactococcus lactis # 15 336 7 328 328 226 36.0 7e-59 MSQNIAIGFTKGLAITAENSFQSFALPVPTPQPNEVVVQVDGVSVNPIDTKRRQAATRQA TPQVLGYDAVGTITQVGAQVAGYHVGDRVIYAGTTRKPGSNQQYQAVDARLIARAPQQAP TADLAALPLVGLTAWELLFEKMGFIPEYNANKGQQLLIINGAGGVGSMLSQLAHWSGLTV LATSSPKNHPWLRDHHVDVPLDYHEDLIAQIHQAGIQTVDGIALLYHPEPYLAAASQLIR AFGHIGCIVGPQAGLDLAVVKDKAASFDYEYMFAKTDFAYHIASQGAILSKLLTLYQDGQ IKASVTKEFTGINVANLKAATQLVEEGHMVGKVVLTGPFSL >gi|225002460|gb|ACIZ01000119.1| GENE 15 16871 - 17233 340 120 aa, chain + ## HITS:1 COG:no KEGG:LSEI_0726 NR:ns ## KEGG: LSEI_0726 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 120 1 120 120 154 82.0 8e-37 MKKFGSKRELIGLVIVLVLAAAGFAFFAWYTMRPADTIGTIATISFGIVLSALIGIVLLL DAAARTRWRRFWIDLLFAGLMLALIDYYFLDVTAPWQMLVTGAGLAVVLVALLAIRKIDE >gi|225002460|gb|ACIZ01000119.1| GENE 16 17307 - 17786 322 159 aa, chain - ## HITS:1 COG:no KEGG:LGG_00714 NR:ns ## KEGG: LGG_00714 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 159 1 159 159 269 100.0 3e-71 MNSFNVLLIGLDIVLIGLAGYYLFWQSKIQFTSRYAVSQLIWAVLLGFWFMTTRVNNMPY IIFISIFLVLSIMAGTGGLAPTRLIANGLLARVIPYTHMSSITLTPVSLPNGQEWVVAVF ALSKRRMVRLTFQASLQNLLTELSKVLPKTVPVTVQRMN >gi|225002460|gb|ACIZ01000119.1| GENE 17 17779 - 18945 943 388 aa, chain - ## HITS:1 COG:SPy1011 KEGG:ns NR:ns ## COG: SPy1011 COG0628 # Protein_GI_number: 15675014 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pyogenes M1 GAS # 3 374 9 381 393 253 38.0 3e-67 MKRTDSWLYRRFVNSKFMILLVDLLLALLVIFVFTKIAWVFQPVVDFLGIIAPPFIFAGI LFYLTVPIINRLEKAGLHRGLAIGLLFIVLISLLVWGLLRFIPAVSNQITSIVDSAPQIF TEIGKWLDDLNDKQNILSQHDLNEIANEVQTFFTGKQGAFVTGTISQLQNLIGIVGNVVV TISTAPIILFFMLKDGDKFTPMILQIVPTKLRRSVKQMLHEMNEKVGSYVQGQITVALCV AVMFMIGYSVIGLRYGLIFGLLACPLNLIPYFGSALAMIPPLIMGALTSPRMILAVIVVF FIEWLIETQLISPLVMGSKLELHPITIVVVLLTAGNLFGLVGVILGIPGFAVLKIVVTRF FSWYQQVSGLYESDHPTDEVDQKGVPHE >gi|225002460|gb|ACIZ01000119.1| GENE 18 19391 - 19585 285 64 aa, chain + ## HITS:1 COG:no KEGG:LGG_00716 NR:ns ## KEGG: LGG_00716 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 64 1 64 64 92 100.0 6e-18 MSILRGAKWTLITLTLVATLLLFSNYATAGILLMALDIFLSFFYAVIKSRCDRRQMHKMP LLHN Prediction of potential genes in microbial genomes Time: Wed May 25 20:28:33 2011 Seq name: gi|225002459|gb|ACIZ01000120.1| Lactobacillus rhamnosus LMS2-1 contig00153, whole genome shotgun sequence Length of sequence - 7515 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 5, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 209 - 268 6.4 1 1 Tu 1 . + CDS 295 - 921 791 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 958 - 1023 22.1 - Term 953 - 1004 -0.3 2 2 Op 1 . - CDS 1042 - 1515 270 ## LC705_00711 hypothetical protein 3 2 Op 2 . - CDS 1526 - 2473 638 ## COG0679 Predicted permeases 4 2 Op 3 . - CDS 2495 - 3112 533 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family - Prom 3189 - 3248 4.0 - Term 3339 - 3385 10.2 5 3 Op 1 . - CDS 3411 - 4370 629 ## LGG_00721 hypothetical protein - Prom 4426 - 4485 1.9 6 3 Op 2 . - CDS 4536 - 5108 439 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 7 3 Op 3 . - CDS 5116 - 5466 329 ## COG3189 Uncharacterized conserved protein + Prom 5438 - 5497 4.8 8 4 Tu 1 . + CDS 5557 - 6492 731 ## COG0598 Mg2+ and Co2+ transporters + Term 6567 - 6606 1.2 - Term 6544 - 6604 5.1 9 5 Op 1 9/0.000 - CDS 6617 - 7246 304 ## COG0583 Transcriptional regulator 10 5 Op 2 . - CDS 7233 - 7496 250 ## COG0583 Transcriptional regulator Predicted protein(s) >gi|225002459|gb|ACIZ01000120.1| GENE 1 295 - 921 791 208 aa, chain + ## HITS:1 COG:lin1340 KEGG:ns NR:ns ## COG: lin1340 COG1974 # Protein_GI_number: 16800408 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Listeria innocua # 8 204 5 201 204 201 51.0 1e-51 MPTQASQKRWKQILQTIYEAIEDHGYPPTVREIGKSVGLSSSSTVAAYLEKLLAAGLIAK DPSKPRTIEVTTAGLDFIGVQAQGIPIVGTVAAGVPITAIENIDDYFPVPDDLPYSADEL FMLRVQGSSMIKIGILDGDQIIVKKQNDAENGQIVVAMTEEDEATVKRFYKEKHGVRLHP ENDDMDDMYFPSVTILGIVVSLYRPALV >gi|225002459|gb|ACIZ01000120.1| GENE 2 1042 - 1515 270 157 aa, chain - ## HITS:1 COG:no KEGG:LC705_00711 NR:ns ## KEGG: LC705_00711 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 157 1 157 157 226 100.0 2e-58 MKKLICLTILILLSGCSSTTPASKSTSKQPAASTVTSHVKPTKKTVPKATLSTLVGHAFV QVDNRKKAIRVTSSTSGYYLETLANQGGVFESTDQGIFAAQLTLKSRVFTFTGKAQPQAA SSTLQFQLTKKGQLKQLPNGPVYKKVPQDDLDRLAQP >gi|225002459|gb|ACIZ01000120.1| GENE 3 1526 - 2473 638 315 aa, chain - ## HITS:1 COG:CAC0366 KEGG:ns NR:ns ## COG: CAC0366 COG0679 # Protein_GI_number: 15893657 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Clostridium acetobutylicum # 8 307 3 295 301 75 24.0 1e-13 MTAFISSVFGVFEILILIIIGYFLTARGWFNSHSSKVIAKVVTQVALPAYMIVTISSKFT AGMLLRLLPDLFFPVLSMMILFALSFLVCYLLKVPKSRKGTFKSMFFNSNTVFIGLPVNL ALFGPRSLPYVLVYYMANTTIFWTIGVYLIQGDGPKPARFDLKKALGKVFSPPLLGFMFG IVLVLLNIKLPEFLMADLTYVGDLTVPGSMFFIGIALHTAGWRQLRLSKEAWGIFSGRFL FAPLLMTALVAFAPVPTLMKQIFILQSCMPVMTNAPVVAKLYDADADYAAIMVTETTLLS MIVIPIVMTCIQFIH >gi|225002459|gb|ACIZ01000120.1| GENE 4 2495 - 3112 533 205 aa, chain - ## HITS:1 COG:L81206 KEGG:ns NR:ns ## COG: L81206 COG1853 # Protein_GI_number: 15672060 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Lactococcus lactis # 1 205 1 196 196 169 45.0 3e-42 MINLSASELSPHEQYKLLSGSIIPRPIAWITTQNTAGLINLAPFSFTTGISNQLPLLSVA ILRERQAPKDTAANLLARHEAVVHMVSTDLTKAMNQTAARLAPDQSELTLIDLPLIPSTE IQVPGLQAARIRFETSLYQYVPIRNAAGIIMTDLFILEIRQFHFAEAVLDLPTLHVNPTA LAPIARLAGPNYAELGRTFTLRRPK >gi|225002459|gb|ACIZ01000120.1| GENE 5 3411 - 4370 629 319 aa, chain - ## HITS:1 COG:no KEGG:LGG_00721 NR:ns ## KEGG: LGG_00721 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 12 319 12 319 319 345 97.0 1e-93 MRRERIRRNRRTLYLTLAGIGAIILFIGVFIWLVLRGAKVQGPVASSSSSSASSTSAVTQ SFKSGTYTATGDVTDENGVHHDLTVYVKLTTAKTYTRLLIIDAHSQPQVINDTGSIKQKK GKLTLVSDHANVYTYTTTTTYKHKQASTVDEYSAKDASGTVLSYTTALKKELNNTISLKG KTPHNYHYLTTSLPLQRSKKKLVSLANFKTSQTASSVSSSSVISSVPSSTNSQTSHSVSS TVSTEPSSSAAPSVESQHSQSGASGSNPAQTGGQGTQTGDDSEKPGSDQSNQPPAGSSSS QSPSPTDPGSNSATDTSPH >gi|225002459|gb|ACIZ01000120.1| GENE 6 4536 - 5108 439 190 aa, chain - ## HITS:1 COG:lin1373 KEGG:ns NR:ns ## COG: lin1373 COG0212 # Protein_GI_number: 16800441 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Listeria innocua # 1 178 1 177 179 107 40.0 1e-23 MSTKAEFRSRQLKRLQTAAKETQMAGENLLAALVKTPLWQQADSIGVTVSGPFEVPTAPI IAAAHAANKAVFLPRVMPKRQMVFLPDPGFDQLVTSRFGIPEPPYHADQVEPAPDLLIVP GIGFSLADNFRIGFGGGYYDRFLADYPGHTVTLVPPVMAFNQPDWPVESFDMPIETLILA NGNIIVQKSY >gi|225002459|gb|ACIZ01000120.1| GENE 7 5116 - 5466 329 116 aa, chain - ## HITS:1 COG:mll7394 KEGG:ns NR:ns ## COG: mll7394 COG3189 # Protein_GI_number: 13476151 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 3 113 5 114 120 117 54.0 5e-27 MKVTLERIYQKPQAQGFRVLVDRIWPRGISKVNAALDLWAKTIAPSPELRKWFGHDPEKY PEFKERYLAELAKNPDLPNFIKTLKEHEQDPVIMLYGAKDETHNQAVVLSEFLKNK >gi|225002459|gb|ACIZ01000120.1| GENE 8 5557 - 6492 731 311 aa, chain + ## HITS:1 COG:lin0651 KEGG:ns NR:ns ## COG: lin0651 COG0598 # Protein_GI_number: 16799726 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 1 311 1 316 316 167 31.0 3e-41 MITCYQIQKDRNVQVATDDQANWIRVQSPLPQELQTLATTYGLPQTYVDAALDKHENARV EGLDPADKMPGLIVLRYPIEITNELGFRQFNTVPLTMILLADRVITIMQHPLRAFDDLAA QPLSSKPEEFALEVLWLVLHQFVIDMDQLNDETKQIEGSLGKAAKNTQLYQLMAMQKSLV FFDAALEHSGNLLKSLRAGERFFTAAGYLRRLHDVEVEVVEAQTMVRITNKLLEQYSTAV SAIVSNNLNLIMKVLTSLTIILTIPTIVGGIYGMNVRLPFENAYWAFWWLIGGTAVLCGL AAWWLWRKDYF >gi|225002459|gb|ACIZ01000120.1| GENE 9 6617 - 7246 304 209 aa, chain - ## HITS:1 COG:CAC1588 KEGG:ns NR:ns ## COG: CAC1588 COG0583 # Protein_GI_number: 15894866 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 6 205 89 286 293 125 33.0 6e-29 MHGNKKTKIRFGLPPIIGGYLFPKIAPDLINTGLMPQLETIEAGSAALLDQIKAGKLDFA VLGASGPLVESDLHVVQINAAPFVIITRKDDPLAANKSVRFATLAKRQFITLSEGFVHTR AFAWFEQRHTFSPNIVYRTGDVPLLKRLVRQNVGIGFLTRIAINPDDRLATLAIDDAHQP AFTISIVHRKDRVLTPAMKRFESILKSYK >gi|225002459|gb|ACIZ01000120.1| GENE 10 7233 - 7496 250 87 aa, chain - ## HITS:1 COG:L0148 KEGG:ns NR:ns ## COG: L0148 COG0583 # Protein_GI_number: 15672854 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 84 3 86 291 72 42.0 2e-13 MNTRDFDYFLSLTKTGNFSQTAEKFAVSQPTITTAIKRLEDYFHAQLIIRDRRHHDISVT PAGEQLAAHAAIILNQLTLAQQDIAWE Prediction of potential genes in microbial genomes Time: Wed May 25 20:28:41 2011 Seq name: gi|225002458|gb|ACIZ01000121.1| Lactobacillus rhamnosus LMS2-1 contig00154, whole genome shotgun sequence Length of sequence - 2953 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 127 - 186 4.9 1 1 Op 1 3/0.000 + CDS 257 - 1924 1507 ## COG0281 Malic enzyme 2 1 Op 2 . + CDS 1929 - 2915 948 ## COG0679 Predicted permeases Predicted protein(s) >gi|225002458|gb|ACIZ01000121.1| GENE 1 257 - 1924 1507 555 aa, chain + ## HITS:1 COG:L121483 KEGG:ns NR:ns ## COG: L121483 COG0281 # Protein_GI_number: 15672882 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Lactococcus lactis # 7 542 5 540 540 688 63.0 0 MKYTPEQILNNPFLNKGTAFTQEERNQYGLNGLLPPAVQTLDQQVKQAYAQLQTKPTDLA KRQFLMTLFNENHVLFYKLFSEHINEFMPIVYDPTIADTIENYSALFVNPQNATYLSIDD PDHIESALKHSADGRDIRLLVVSDAEGILGIGDWGTQGVDISVGKLMVYTAAAGIDPSQV LPVVLDVGTNNESLLNDDLYLGNRHKRVYGEKYHNFVDKFVAAAEKLFPNLYLHFEDFGR SNAADILNQYKDKITTFNDDIQGTGIIVLAGLLGAMNISKQKLTDQVYLSFGAGTAGAGI ASRVYEAFVEEGLSPEEAKKHFYLVDKQGLLFDDMTDLTPEQKPFARSRSEFANADELTT LEAVVKAVHPTVLVGTSTVPGTFTESIVKEMAAHTDRPIIFPLSNPTKLAEAKADDLIKW TDGRGLIATGVPAANVEYKGVSYAIGQANNALVYPGLGLGTIASTAKLLTDSMISAAAHS LGGIVDPDQPGAAVLPPVSKLDQFSQTVAIAVAEDAIKNGLNQQPISDAKQAVADMTWKP EYQPLPDSIELDLEE >gi|225002458|gb|ACIZ01000121.1| GENE 2 1929 - 2915 948 328 aa, chain + ## HITS:1 COG:CAC0366 KEGG:ns NR:ns ## COG: CAC0366 COG0679 # Protein_GI_number: 15893657 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Clostridium acetobutylicum # 9 325 5 300 301 73 24.0 5e-13 MTALSTSIQSVLTIVLLIAVGYVLRRQGRFDDQFGKTISDLLMKIALPASIFISVLQRLT LNKLVSLSSGLVYGFGAVILGYLIAFLLVWLLKVRPGRRGTFINMFVNANTIFIGLPLNL ALFGDKAVPYFLMYYVVNTVSTWTVGAFIMAWDDPTQEKAEKSGASFNWKKLLPAPLVGF LVALVFLLLKIPFIHVGWLGFAVNTLDYVGSLVTPLSLIYIGIILADAGLKAIRFDRDTI VALIGRFVIAPALITGLILLGMHAGFNVPGLEAQTLIIQAAAPGLAVLPILATEAHADVE YATNVVTTSTVLFVVVVPILMMLVQGLA Prediction of potential genes in microbial genomes Time: Wed May 25 20:28:48 2011 Seq name: gi|225002457|gb|ACIZ01000122.1| Lactobacillus rhamnosus LMS2-1 contig00155, whole genome shotgun sequence Length of sequence - 21394 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 15, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 2 - 30 2.3 1 1 Tu 1 . - CDS 46 - 543 435 ## COG2077 Peroxiredoxin - Prom 771 - 830 6.3 + Prom 747 - 806 6.1 2 2 Tu 1 . + CDS 885 - 1406 184 ## LC705_00722 hypothetical protein + Term 1417 - 1474 3.6 - Term 1379 - 1416 -0.7 3 3 Tu 1 . - CDS 1563 - 2537 495 ## COG1396 Predicted transcriptional regulators - Prom 2585 - 2644 2.5 4 4 Tu 1 . + CDS 2652 - 4244 850 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 4293 - 4337 8.4 - Term 4281 - 4323 8.0 5 5 Tu 1 . - CDS 4330 - 6144 1728 ## COG1164 Oligoendopeptidase F + Prom 6382 - 6441 5.3 6 6 Tu 1 . + CDS 6483 - 6929 502 ## COG0105 Nucleoside diphosphate kinase + Term 6995 - 7045 10.0 - Term 6974 - 7039 22.6 7 7 Op 1 . - CDS 7100 - 7450 442 ## LGG_00734 hypothetical protein - Prom 7470 - 7529 3.7 8 7 Op 2 . - CDS 7531 - 9879 1965 ## COG0474 Cation transport ATPase - Prom 9899 - 9958 6.2 + Prom 9938 - 9997 2.8 9 8 Op 1 . + CDS 10046 - 10969 628 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 10 8 Op 2 . + CDS 11022 - 11369 430 ## LGG_00737 hypothetical protein + Term 11399 - 11436 1.1 + Prom 11847 - 11906 5.1 11 9 Op 1 . + CDS 11948 - 12457 495 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 12 9 Op 2 . + CDS 12482 - 13636 1060 ## COG0475 Kef-type K+ transport systems, membrane components + Term 13693 - 13721 -0.2 + Prom 13790 - 13849 2.9 13 9 Op 3 . + CDS 13891 - 14547 775 ## COG0546 Predicted phosphatases + Term 14609 - 14660 14.2 - Term 14597 - 14648 11.2 14 10 Tu 1 . - CDS 14661 - 15119 439 ## COG1846 Transcriptional regulators - Prom 15222 - 15281 3.7 + Prom 15143 - 15202 4.5 15 11 Tu 1 . + CDS 15241 - 16173 765 ## COG1073 Hydrolases of the alpha/beta superfamily 16 12 Tu 1 . - CDS 16189 - 16659 484 ## COG1780 Protein involved in ribonucleotide reduction - Prom 16681 - 16740 5.1 - Term 16725 - 16771 6.5 17 13 Tu 1 . - CDS 16834 - 17658 766 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 17714 - 17773 2.7 + Prom 17812 - 17871 3.5 18 14 Op 1 . + CDS 17996 - 18754 501 ## LGG_00745 hypothetical protein 19 14 Op 2 . + CDS 18760 - 19605 532 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold 20 15 Op 1 . - CDS 19615 - 20262 644 ## COG2323 Predicted membrane protein 21 15 Op 2 . - CDS 20273 - 20734 367 ## LGG_00748 hypothetical protein - Prom 20759 - 20818 5.4 Predicted protein(s) >gi|225002457|gb|ACIZ01000122.1| GENE 1 46 - 543 435 165 aa, chain - ## HITS:1 COG:BS_ytgI KEGG:ns NR:ns ## COG: BS_ytgI COG2077 # Protein_GI_number: 16080001 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Bacillus subtilis # 2 162 3 164 167 112 34.0 4e-25 MEITRHGTAIMTNGTPTAIGEKLPVFTVKDAQGQSLTTQDLSRRLTLISVVPDINTRVCS ISTKHFNEDMDAFDNVDFYTISTNTPQEQQTWCAAENVKKMQLLSDQNADFGKAMGLFVA DNHTDARSVWIIDDTGTVKYRELITEQTHEPDYTSALAYLEAHQH >gi|225002457|gb|ACIZ01000122.1| GENE 2 885 - 1406 184 173 aa, chain + ## HITS:1 COG:no KEGG:LC705_00722 NR:ns ## KEGG: LC705_00722 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 173 1 173 173 352 100.0 2e-96 MEQTLVVYSSETGFTQRFALCIAQTLHCEMIDVQFLTASDLKNRSLVIYGGHLVGNKVLG LKSFYRQFKEDLPEQFIVFGSGVVRRESVNCQQIAQYQQNHQCQCTRFYYLQGHPKLNQM NLFWRIRAAWALKRYGSRSCPAVQDAIRPLVSDVTQVLNRSFATDIVENPPLS >gi|225002457|gb|ACIZ01000122.1| GENE 3 1563 - 2537 495 324 aa, chain - ## HITS:1 COG:lin0350 KEGG:ns NR:ns ## COG: lin0350 COG1396 # Protein_GI_number: 16799427 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 4 295 5 284 300 62 23.0 8e-10 MNIGTLLRQIRKNKGLTLAQVADATISSSYLSKVERGQNDITVTKLLHLLERLETTPEEF LYIAADDFDMDYSNLDRMLETYFGSSLTMSANPQDFPETLRKMKENVRQAQTRFQQTPTL KNKLAVNARMLLPVFFQSLVIDEAHKLPVRPDLTHVAEQYLQQLDNWGELDLYLFIIFSI AMPAETQHRLLTIAIKRSHHYRHFRSAPLLILNLLENQVMLELTRQDNQAAARYLSQLET ALDKKPSAEFALWAQFHRAELCARQGQHKKARALLDQVVEIAAALKFKDLADIFAFARTI ILTEPPTSIYKYFHILVGSIAEGE >gi|225002457|gb|ACIZ01000122.1| GENE 4 2652 - 4244 850 530 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 5 524 5 527 535 150 25.0 5e-36 MLTWRYGRKWQLLVYAIAALFYSMMNVGVAYCLTILIQAASARSMARLVQAVVPSLLIFL GASVANWLVMFLKAVITRRVNLNIKARMAAYLIDDADLVSTQSSALSFMTNDLKMIETNG IASELAIINQLFIFGGAMIGAFAFDWMTALAFFLGNLIPLTVSRVARKGLHRASKDWSTA NGHWTSGIKNYLAGRDTIRIYQAQAVVKTRINRLARGLEDQLKKMTVLTGSMNTLGMLLA LWFGVLAPFGIGIYRVMIGASTLALFMGIVQLSNDMRNPLIMVIEAMNQWQTTKPLVAKI KQAQPRDASTAEKPITAGPIVLKDASVTLGKQKIFDSRNLTIKPGQKVLIMAPSGYGKST LLRLLIGELPLASGQYYLGNAQITAATRTQLSHLFGLIKQTPFMFDDTIRFNLTLGGHFS QTALDKAVADAGLTALIAQKGWDYQVGEEGHHLSGGQIQRLEIARALLRQRPILLADEVT SALDEKLSDQLHTRLLQSPATLIEVAHHISQSWQQRYDQVIQLDADAEAG >gi|225002457|gb|ACIZ01000122.1| GENE 5 4330 - 6144 1728 604 aa, chain - ## HITS:1 COG:SP1780 KEGG:ns NR:ns ## COG: SP1780 COG1164 # Protein_GI_number: 15901609 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Streptococcus pneumoniae TIGR4 # 18 601 15 596 598 509 45.0 1e-144 MSETTLPKRQAVDPQLTWDLTPIFSDEFAYTEAVKQVRALTKDFVRMYQGKLTQPAVIVD ALADYGTIVALASRIIHWGFMPYSTDTTDPALRTRQAQVTGLDGEIGGQLSFFRAELTQL PENVLDAVVETAPDYAGFIRQIKVAKQGALPPAAEKVLAELTPVFQAPSDIRDQSIFGDM DFGTFTAHGKTYPLSFVMYEENYQKHPDTEIRRAAYAQFNQTLRRYENTMAAGYLAQVTR EKITATMRGYDSVIDYLLADQEITREMFNRQIDVIMRDLAPIMRRYVTHVKSLWGLDHIG YTDLQIDIDPSYAPTITLEQAKEDIKNATALMGQDYQAQMMQAFSERWIDFPANQGKDSG AYTAGPYGVHPYVEMTWSNTLPAVYTLIHELGHTAQMVRSQEAHNVLDADFNAYLVESPS TFNELLLTHYLEENAKDPRMKRFALSRLLNDTYFHNFVTHLLEAAFQREVYNLIDNGETF DAARLDAITRKVLTDFWGSAVELEPGAELTWMRQSHYYMGLYSYSYSAGLTVATQAFQTI EQQGQPAVDRWLRYLSLGDSLDPVEAARVAGVDVTTDAALKHAISFLGTTVDEIEALSKE IEQV >gi|225002457|gb|ACIZ01000122.1| GENE 6 6483 - 6929 502 148 aa, chain + ## HITS:1 COG:SP1959 KEGG:ns NR:ns ## COG: SP1959 COG0105 # Protein_GI_number: 15901782 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Streptococcus pneumoniae TIGR4 # 4 137 2 137 137 144 54.0 5e-35 MAEEQTLVLVKPDGVAQGHIGEVITRIERRGFTIEALKVTQATSAQLHQHYAALVDKPFF PKIERFMTSGPLVAMIVSGFNVIEAVRTMTGATNPGDAAPGTIRGDFGREWADQTIRNVI HSSDSEASAQREIPIWFADKQYAPKANQ >gi|225002457|gb|ACIZ01000122.1| GENE 7 7100 - 7450 442 116 aa, chain - ## HITS:1 COG:no KEGG:LGG_00734 NR:ns ## KEGG: LGG_00734 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 116 1 116 116 213 99.0 1e-54 MGIDNNQLVARYFDRKADHGAFFTALEAYLDDELGKLYATLNDTFADTLTLSVDDAIAQA HQAGAKIDDPAAEEIATTNYLFKELASRGLWLQSPDMTEPNTIIAKLNFGNRRTYY >gi|225002457|gb|ACIZ01000122.1| GENE 8 7531 - 9879 1965 782 aa, chain - ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 10 744 4 744 775 476 38.0 1e-134 MAEQKISPDQGLSEEQVQQRIDAGQHNLPLKPLTRSISQIIKVNTFTLFNLVNVVLGALI ITTGSYKNLLFLGVAIINTAIGTIQEIQAKHQIDKMSILAATRATVIRNGQVEKVELEQL VMDDMVILKRGDQIPVDGTVVATNGLESDESPLTGESRPIAKKVGDTLLSGAFVVSGQAT MQVTAVGDATFAAKLALEAKAEKASQSQLLATINRIIRVLTYVLIPIGVILFTVSMIRRG HYNRAILTTSAAMIGMIPEGLVLLTNVALAVSARNLAVKRVLVRALPAIEALARVDTICL DKTGTITSGKLKVTDTLPADGRTAKDVTRAAAAIVYALNDDNETALAIKAAADADANQQV TQTVPFSSARKWSGAVVDVQALFMGAPQFTFGDQLPAAITAKIQKAAANGYRVLAVGTAT QLTQPLVNPQLIGLILITDELRPTAVNTFDFFKTQGVALKVISGDDPTTVANIAKQAHLE GADRSVDMSTISADATAVDFQTLVNQYNVFGRVTPDQKKQLIMAYQALGHTVAMTGDGVN DVLALRQSDCSIAMASGADAASSIADFVLLDSNFDAMTGVLNEGRRVINNIERVASMYLV KTMYSVILATIFVFLPLDYPIVPINLTPVSAIGVAIPSFFLTLEPNFERVTGQFMQKVMT VAAPAAISVVVYTLLLTWMESFFHLSFDTTSTMVAMLIGTISLNVLLVVARPFNRLKTGL LASLSVALFLVFFVFNGIFSLANLWHWQLALLYLPLMASTVPFYLLIQEFLGRRVLSKIN WR >gi|225002457|gb|ACIZ01000122.1| GENE 9 10046 - 10969 628 307 aa, chain + ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 16 297 16 292 296 165 34.0 1e-40 MVKRNPNGTRFITLPNGYHLWTQTLGSGPIQLLTLHGGPGGTNEVFENFAAELASFGVRV SRYDQLGSFFSDQPDFSDPANQKRFLNIAYYVDEVENVRQQLGLDHFYLLGQSWGGVLAI EYGLKYPQHLKGLILSSMIDNLDEYLVNINKIRETMFSSDDVAYMQRIEAQHAFADAKYQ QLVRELGEQYLHHAKDPQPRHLISTLATPVYHHFQGDNEFVMVGALKDWDRRADIHRLTM PTYLTFGGHETMPLSAAKRMAQTIPNATLHVAPNAGHGQMLDNPTDYFSHLGQWLVKTDA ESPLLDN >gi|225002457|gb|ACIZ01000122.1| GENE 10 11022 - 11369 430 115 aa, chain + ## HITS:1 COG:no KEGG:LGG_00737 NR:ns ## KEGG: LGG_00737 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 106 1 106 115 179 100.0 3e-44 MSDFDELKEGLLEPVHAFDHALEQQPDLIIPLAVIHLIPIALTLGGGIAIIRGHQKLRAE KERTKQLSLKLEMHKRHHGRHPWRLAPEHRGAHEVFAPEYAEVPVNKKHHLHHKH >gi|225002457|gb|ACIZ01000122.1| GENE 11 11948 - 12457 495 169 aa, chain + ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 1 166 4 167 169 131 41.0 6e-31 MRVAMPADIPAMMKVIASARQFLGAQGIDQWQGTYPDQAAIEQDIATGIGRVLIVDGRVA GVAALVVGPDPYYLRIDGAGWLADVPYLAVHRFALDGSIRGKQLSRVFFSNIMSEAYRRG FDDLRVDTHAKNVIMQHAITGMGFDFRGIVYMDEPVPERNAYEVRLTSV >gi|225002457|gb|ACIZ01000122.1| GENE 12 12482 - 13636 1060 384 aa, chain + ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 379 1 376 379 259 45.0 6e-69 MQDIGNLALILVTTLVLAHVSRLLKMPAVIGELLAGILIGPALLGWISSTHTISLFAEIG VIILMFLAGLESDLELLKKYFKPGMLVAVIGVIVPVVVVFGFAHLWGFNLTSSLFLGITF AATSVSISVEVLKELHALEGRNGATILGAAVVDDILTVLILSFTVAVLGEQKTTSTPFWL QIIEQLLYFVGIYFVVRWAAPYLMRLSEKLFPASAVTIMSLLICLGMAYVADLVGMSAVI GAFFAGVAVGQTHYRHEVDGNLSAIGYAVFIPVFFVSVGLNMRFETFGRDLGFIAILTVL ALVTKWVGCGLGDRLAGASWLQSNVVGAGMVSRGEMALIVAQIGFEAKLMDAEYYSAVIV VIVITTLIAPVILKDALRREQELV >gi|225002457|gb|ACIZ01000122.1| GENE 13 13891 - 14547 775 218 aa, chain + ## HITS:1 COG:CAC0418 KEGG:ns NR:ns ## COG: CAC0418 COG0546 # Protein_GI_number: 15893709 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Clostridium acetobutylicum # 4 204 5 203 216 138 36.0 8e-33 MATLFFDFDGTVADSEAGIVAALKYMVQDRGLRPLDNSAYVQFIGPALVQKLPEVWPELD DIEVKRAIDAFHHYYQEEGLYQAKLYPGFLDTMTALKEQGHHLYIASAKPEMMLHRLVKH FALDRYFNAAYGASDDEQTRVTKTDVLAYALKETNEDPAKSVMVGDRANDMIGGLDNHVQ LLGVTYGFGSAKELEDAGAKVLVDKPKAIPSGLAKLAK >gi|225002457|gb|ACIZ01000122.1| GENE 14 14661 - 15119 439 152 aa, chain - ## HITS:1 COG:lin1188 KEGG:ns NR:ns ## COG: lin1188 COG1846 # Protein_GI_number: 16800257 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 4 146 7 150 150 68 31.0 5e-12 MTDKPLLEAYVDAYFSTFKNINELISEPMAAYHLSFEQYRILSDIANDPEISLTAIVNKR GVTKPAVARQLRVLRNLNYVTQSKFEADRRRNMLQLTPLGKQVEAAITKNANEQFNEWVA ALGERKAKQFVKLLNEIGSKVIRPQQAAKKNR >gi|225002457|gb|ACIZ01000122.1| GENE 15 15241 - 16173 765 310 aa, chain + ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 306 1 303 308 267 44.0 2e-71 MRKHKKAWLIGILSVIGVMVAGLVGASLYFYQYAFVPSKKSFLSGKESRIITDSKVWLKS VHKETWTEQAAGDKLKLVADYVPAAKPTNKTIVVAHGYMTNKEYMAPQIKMFHDAGFNVL APDDRGQGQSEGNYIGYGWPDRLDYLKWINQIIKKQGKQSQIALYGVSMGGATVMYLSGE KLPPQVKSIVEDCGYTSIIDELAYQAKSMFNIPKWPLVPAVALTATLKAGYNVFDASAID ALHKNTRPILFIHGSKDTFVPTKMVYQNYRAATKSKKALWVVKGAAHARSFPDHQKAYTK RVVGWFNANW >gi|225002457|gb|ACIZ01000122.1| GENE 16 16189 - 16659 484 156 aa, chain - ## HITS:1 COG:SPy1984 KEGG:ns NR:ns ## COG: SPy1984 COG1780 # Protein_GI_number: 15675774 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Streptococcus pyogenes M1 GAS # 5 151 4 146 160 139 46.0 2e-33 MTEPIRILFISISGNTRAFAKRLAEYAQTQHDQNPENPAIVLKEISEATQSDGETKPFFV MVPTYLDGGNGIDNGVKELMTNAMGDYLAEGDNAKLCLGIIGSGNRNFNEQYCLTAKRYA KEFDAPFLADYELRGTPSDAKKIYTVLTRVAHTATH >gi|225002457|gb|ACIZ01000122.1| GENE 17 16834 - 17658 766 274 aa, chain - ## HITS:1 COG:L67726 KEGG:ns NR:ns ## COG: L67726 COG0656 # Protein_GI_number: 15673225 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 3 274 7 279 280 320 54.0 2e-87 MHYTLNDGNVLPAIGFGTYKLTGTNGVRAMVGALNLGYRLLDSAFNYENEGAVGEAVRQS GIPRSQLIVASKLPGRHHRYQEAIDTIEESLYRAGLDYYDLYLIHWPNPKEDLYLEAWQA LIQAQRFGLIRSIGVSNFLPEHIDRLIKETGVTPAVNQIELHPYFNQQEQRAYDDAHNIQ TVAWSPLGRGAVLQEPAIKQIAATHGKNVGQVILRWDLQHHILPIPKSAHLSRQRTNLDV FDFSLTKEEMAAIDALTKSDGRLNNQDPAVYQEF >gi|225002457|gb|ACIZ01000122.1| GENE 18 17996 - 18754 501 252 aa, chain + ## HITS:1 COG:no KEGG:LGG_00745 NR:ns ## KEGG: LGG_00745 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 252 2 253 253 421 99.0 1e-116 MLTIGTPARTEQIVVKSQGLQQLTDTLNHDLVTTANQNGAALNSDTKLVTLDDTQRLAVK MITASAANQTHISLATIKESLTSRLQTAAKNQGQNFDDQKVLASLNAKLEYEINESIMEQ GWGLIYPLLVLMTQTAVIVAAILLVIVLLIMLKTAHSWRRFMAVVGRSTYAMGYFGGFIA ILVTASPLLGMISTRAPLNTQLASDLIRAYSPLWQRVAGWTIVVGLIIAAISHFLPRPAM LADDSANPAAER >gi|225002457|gb|ACIZ01000122.1| GENE 19 18760 - 19605 532 281 aa, chain + ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 25 281 26 287 289 189 40.0 4e-48 MKRNNWIWLGLLGMVLVVSAGWYWFHNQSANTSDQEQASIGKTATLYLHGYSGGAGSTNT LIRHAKQAGATKVLTATVTKNGKVSWLGTPHHVRKPIVQVVFEDNRNPDAVKWADWLATI NRQLYQRYGVRNVNFVAHSMGNMAVMFYAIRNQDQQKLPKINAYVAIAGHFDGIIGMGDQ PHQIKLAANGYPSPLDENYAELARMRDRFPKGVKVLNIYGDLRDGSDSDGRVSNNSSRSL RYLVSPRATSYREKEYFGRDAQHSALHENPKVAQAVDAFIW >gi|225002457|gb|ACIZ01000122.1| GENE 20 19615 - 20262 644 215 aa, chain - ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 13 214 9 211 211 199 48.0 3e-51 MRLFQDPYFVTAMKLLLGFIVFIAQIKLTGKGNLAPATIVDQMQNYVLGGIIGGVIYNTD IGLLQFVNVLLIWTLIVFSTKYLTNHNRWLKRVIDGEPLLVVQHGQIKVDTATQVGLSAN DLAYKLRAAGVNDLRDVRQAYLEQNGQLNVILKGDETIKYPLILDGQIDPAALDAIDHDE KWLKARLAEQGYEPGDVYMASFLGGRVVVSPYDRT >gi|225002457|gb|ACIZ01000122.1| GENE 21 20273 - 20734 367 153 aa, chain - ## HITS:1 COG:no KEGG:LGG_00748 NR:ns ## KEGG: LGG_00748 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 153 1 153 153 205 99.0 3e-52 MGTTFFAYSVLTQQNSWQSTLRYTIILIGALLIIAYLLYFLRHKRSNKYRDLLVLVALVE LLTIGIQVRDLQASRTANADSQAVATLLRSVATQKHVATRQLYANSNTVHTGMLITIGRS TKEMYTVTINDDNNSYQLSKTTLIVPKAQFITK Prediction of potential genes in microbial genomes Time: Wed May 25 20:29:05 2011 Seq name: gi|225002456|gb|ACIZ01000123.1| Lactobacillus rhamnosus LMS2-1 contig00156, whole genome shotgun sequence Length of sequence - 9185 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 6, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 175 - 1308 931 ## COG0620 Methionine synthase II (cobalamin-independent) + Prom 1354 - 1413 4.6 2 2 Tu 1 . + CDS 1443 - 1916 511 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis - Term 1926 - 1990 20.0 3 3 Tu 1 . - CDS 2002 - 2598 519 ## COG0398 Uncharacterized conserved protein - Prom 2633 - 2692 3.1 + Prom 2524 - 2583 1.6 4 4 Op 1 29/0.000 + CDS 2648 - 3286 634 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 5 4 Op 2 4/0.000 + CDS 3362 - 4408 950 ## COG2255 Holliday junction resolvasome, helicase subunit 6 4 Op 3 17/0.000 + CDS 4418 - 5503 883 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) + Term 5576 - 5613 6.2 + Prom 5880 - 5939 5.8 7 5 Op 1 15/0.000 + CDS 5994 - 7136 763 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 8 5 Op 2 . + CDS 7209 - 7634 543 ## COG1862 Preprotein translocase subunit YajC + Term 7661 - 7695 4.4 + Prom 7773 - 7832 6.4 9 6 Tu 1 . + CDS 7878 - 9185 399 ## PROTEIN SUPPORTED gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P Predicted protein(s) >gi|225002456|gb|ACIZ01000123.1| GENE 1 175 - 1308 931 377 aa, chain + ## HITS:1 COG:L124252 KEGG:ns NR:ns ## COG: L124252 COG0620 # Protein_GI_number: 15672700 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Lactococcus lactis # 6 375 3 369 369 378 50.0 1e-104 MTEEVQTKAPFRADLVGSLLRPERLKVAHQQLGIGEIQQDQELAIQHEAIKHIVKKQVEL GFNAVTDGEFSRRYWHLDFFWGLNGFEKDDAWKYERDFKGGINAAANVHLAGKVGFNPDH PFFAAFNYLKSIVPAGVLPKQTIPSPALLFRDHRSDNWSKYYASFDDYLADVVQAYVATI EHFYTLGVRYLQIDDTNWAYLIQNLKDTENDPKRHQHFVDFAKLAHQVIKAVLVRLPEDL TVTSHICRGNFQSTFLFSGGYQYVADEIGDLPYDGLFLEYDSQRAGSFEPLPQLWQGDTN KRIVLGLITSKFPELEDEEKVIERIHAATAYVPLSNLALSTQCGFASTEEGNKLTEDDQW AKLALVQRIAHRVWEDA >gi|225002456|gb|ACIZ01000123.1| GENE 2 1443 - 1916 511 157 aa, chain + ## HITS:1 COG:SPy1642 KEGG:ns NR:ns ## COG: SPy1642 COG1854 # Protein_GI_number: 15675515 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pyogenes M1 GAS # 4 157 7 160 160 250 72.0 8e-67 MAKVESFTLDHTAVKAPYVRLITTEKGPNGDEISNYDLRLVQPNTAAIDTAGLHTIEHLL ASLLRDRMDGVIDCSPFGCRTGFHLITWGTHSTTEVAKALKSSLEAIANDITWDDVPGVD IKSCGNYKDHSLFSAKEWAKLILSRGISNDPFTRQVV >gi|225002456|gb|ACIZ01000123.1| GENE 3 2002 - 2598 519 198 aa, chain - ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 4 193 7 197 201 144 42.0 1e-34 MTPKNVRHLINLATLIVVIALVIVTIYWYDLGILSDVKVLQSYIARLGLTGALFFVVIQV IQVVIPIIPGGISTAAGVILFGPWFGFLYNYIGIAIGSFINFFLARRFGKPLLTYLISEK TYEKYIGYTKNQTRFDHLFTLAIVLPVAPDDVLCLLAGLTKMTFTRFFWIIILGKPITIF AYSMSLLYGGRWLIDLFS >gi|225002456|gb|ACIZ01000123.1| GENE 4 2648 - 3286 634 212 aa, chain + ## HITS:1 COG:lin1568 KEGG:ns NR:ns ## COG: lin1568 COG0632 # Protein_GI_number: 16800636 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Listeria innocua # 15 209 1 200 201 147 39.0 1e-35 MSQAYQTYVLNGELMYEYFEGTIQAVTPAYIVIDVNGIGFRLLVANPYDFEAGKQTRIYV QLIIRENDQTLYGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKF LTKFPGIGKKTAAQIILDLKGKITTDAQPAAATIMPTADQVAPELADALAALVALGYTQR AVDGITDALKAFDATTTDAYLREGLRLLSGRA >gi|225002456|gb|ACIZ01000123.1| GENE 5 3362 - 4408 950 348 aa, chain + ## HITS:1 COG:BS_ruvBm KEGG:ns NR:ns ## COG: BS_ruvBm COG2255 # Protein_GI_number: 16081161 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Bacillus subtilis # 7 337 5 334 336 419 63.0 1e-117 MPDANKDRLVSGDIDDLNEAQIEKSLRPRRLAQYIGQDRVKHQLTVYITAAKQREESLDH VLLYGPPGLGKTTLALVIANEMGVNIRTTSGPAIEKPGDLVALLNELRPGDVLFVDEIHR LPKIVEEMLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGI SEHMAYYSPDDLSEIVKRSANVFNMAIDAEGAYEIARRSRGTPRVANRLLKRIRDFAEVA GKSPVDLAMVDHALDQLQVDAQGLDQIDRKLLTFMIRDYQGGPVGLSTIAANIGEEMATI EEMYEPYLLQIGFLKRTPRGRMVTPAGFAHMGMTMPQSSDEQSPSKNN >gi|225002456|gb|ACIZ01000123.1| GENE 6 4418 - 5503 883 361 aa, chain + ## HITS:1 COG:SP1416 KEGG:ns NR:ns ## COG: SP1416 COG0809 # Protein_GI_number: 15901270 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Streptococcus pneumoniae TIGR4 # 23 361 4 342 342 521 72.0 1e-148 MEANKLQDKKRYRRVENKDYQLSDFDYDLPHELIAQTPLKERDASRLLVLNADTGAMQDK HFYDILDYFKPGDALVMNDTRVMPARLYGVKPETGAHMEVLLLNNTSGDDWETLMKPARK APVGTVIDFGDGLLKATVTKELEHGGRMIHFDYDGIFMEILDKLGETPLPPYIKEKLEDP EMYQTVYSKELGSAAAPTAGLHWTKELLQKVQDKGVKLVYLTLHVGLGTFRPVVEENIEA HKMHSEFYRLTPEAAATLNEVRDNGGRIIATGTTSIRTLEAIGTKFDGAIKADSGWTDIF IKPGYQWKVVDAFITNFHLPKSTLVMLVAAFTGRDTILNAYKHAIEEKYRFFSFGDAMFI Y >gi|225002456|gb|ACIZ01000123.1| GENE 7 5994 - 7136 763 380 aa, chain + ## HITS:1 COG:SPy0203 KEGG:ns NR:ns ## COG: SPy0203 COG0343 # Protein_GI_number: 15674403 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 5 380 6 380 380 629 75.0 1e-180 MEPAVKYRLIHQDKHSGARLGELITPHGTFPTPMFMPVGTQASVKTMAPEELDTMGATVI LANTYHLWLRPGPDLIEEAGGLHRFMNWHKGILTDSGGFQVFSLADTRHITEDGVTFKNH LNGAKMFLSPEKAIAIENALGPDIMMSLDECPPFFESYEYVKKSVARTSRWAERGLKAHK NPDWQALFGIVQGAGFKDLREQSAKDLVSMDFPGYSIGGLSVGESKDEMNHVLDFTTPLL PEDKPRYLMGVGSADALIDGALRGIDMFDCVLPTRIARNGTCMTSRGRLVIKNAKYAHDF GPLDPNCDCYACRNYSRAYIRHLIHVGEAFGIRLTTYHNLYFLLHLMQQVREAIANDDLL AFREDFFEAYGYNKEKAKNF >gi|225002456|gb|ACIZ01000123.1| GENE 8 7209 - 7634 543 141 aa, chain + ## HITS:1 COG:SP2029 KEGG:ns NR:ns ## COG: SP2029 COG1862 # Protein_GI_number: 15901850 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Streptococcus pneumoniae TIGR4 # 3 86 2 84 99 90 50.0 1e-18 MGNGNVSMIVLLVIFVAFMYFGMIRPQKKQQQKRQEMLSQLKKGDPIVTIGGLHGVIDSI DQQAGTVVIDSDGIYLTFNLNAVRGVASRPATPTPAPAAKAEATNTDEQRVAKEASDTAA KSDDQPAAADSDAKADDDKQV >gi|225002456|gb|ACIZ01000123.1| GENE 9 7878 - 9185 399 436 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P [Lactobacillus reuteri DSM 20016] # 57 415 82 433 477 158 30 2e-38 MLKNTAKAATEVDVKGMIDELVANAHSALKIMKTFDQEKIDHIVHRMAIAGLDHHMELAK LAVDETGRGVWEDKAIKNMFATEEIWHSIKNNKTVGVINEDKQRGLVSIAEPIGVIAGVT PVTNPTSTTIFKSEISIKTRNPIIFAFHPGAQKSSARALEVIREEAEKAGLPKGALQYIP VPSMEATKTLMDHPGIATILATGGPGMVKSAYSSGKPALGVGAGNAPAYIEASANIKQAV NDLVLSKSFDNGMICASEQGAIVDSSIYDAVKKEFEAQGAYFVKPKDMKKFESTVINLEK QSVNPRIVGQSPKQIAEWAGIQIPDDTTILIAELKDVGKKYPLSREKLSPVLAMVKADGH EDAFKKCETMLDIGGLGHTAVIHTADDELALKFADTMQACRILINTPSSVGGIGDLYNEM IPSLTLGCGSYGGNSI Prediction of potential genes in microbial genomes Time: Wed May 25 20:29:06 2011 Seq name: gi|225002455|gb|ACIZ01000124.1| Lactobacillus rhamnosus LMS2-1 contig00157, whole genome shotgun sequence Length of sequence - 3679 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 10 - 1299 911 ## COG1454 Alcohol dehydrogenase, class IV + Term 1309 - 1346 -0.6 + Prom 1369 - 1428 4.4 2 2 Op 1 . + CDS 1460 - 2104 464 ## COG1321 Mn-dependent transcriptional regulator 3 2 Op 2 . + CDS 2134 - 3621 1112 ## COG0364 Glucose-6-phosphate 1-dehydrogenase Predicted protein(s) >gi|225002455|gb|ACIZ01000124.1| GENE 1 10 - 1299 911 429 aa, chain + ## HITS:1 COG:lin1675_2 KEGG:ns NR:ns ## COG: lin1675_2 COG1454 # Protein_GI_number: 16800743 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Listeria innocua # 17 424 1 410 411 509 60.0 1e-144 MGTVDLLNIKTMAKRRNNMQWMKLPPKIYFEKNSVRYLEHMEGIKRAFIVADRSMEKLGF VKIIEDVLARRENPVQVQTFVDVEPDPSTDTVFKGTDIMRSFGPDTVIAIGGGSVMDAAK GMCLFNDAGDADFFGAKQKFLDIRKRTYTFPKLNKTKLVCIPTTSGTGSEVTPFAVITDS KAGIKYPLADYALTPDIAIVDSQFIESVPPVVVADSGIDVLCHATESYVSTMATHYTKGL SLEAIKLVFENLEKSYHGDIAAKSKMHDASTIAGMAFANALLGINHSIAHKLGQAFHLPH GRCIAITMPHVIRFNASQPKKRAIWAKYSYFRANEDYAEIARYLGLPGKTTDELVESYVQ AFIKLAHSVGIKLSLKDQGVQKADLDKQVDRLAELAYEDNCTVTNPQEPLISDLKHIILD EYEGTDSTF >gi|225002455|gb|ACIZ01000124.1| GENE 2 1460 - 2104 464 214 aa, chain + ## HITS:1 COG:SP1638 KEGG:ns NR:ns ## COG: SP1638 COG1321 # Protein_GI_number: 15901474 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 1 213 1 213 216 134 37.0 2e-31 MTPNKEDYLKLIFEIGGDTELVSNKQIVAGMHVSAASVSEMINKLGEEKLVAHTPYQGIQ LTSAGRKKAAILVRNHRLWEVFLVKCLKYPADAVHQEAEKLEHALTPEMAKRLAAMLGNP QYCPHGGVIPDADGHYIQQSRVTLGAMEVGQKGHIERLIDEVSLIDYTVKLDLRLDDVFT VTAKTLDAVVIKLDRTGKELAVDADRAAHIFVEL >gi|225002455|gb|ACIZ01000124.1| GENE 3 2134 - 3621 1112 495 aa, chain + ## HITS:1 COG:L0044 KEGG:ns NR:ns ## COG: L0044 COG0364 # Protein_GI_number: 15674202 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Lactococcus lactis # 1 488 1 491 503 565 54.0 1e-161 MPEESRAVIIIFGGSGDLASRKLYPALFNLYRRGVLAEHFAVIGTARRPWSDEHYHEVVA NAVAGAHADAKQVHAFAQHFFYQSHDVTDADHYITLKNLAAKLDDQFAVGGNRVFYMAMA PDFFETIASHLKSEHLLTDAGFNRLIIEKPFGHDYASAKALNDSLTATFDDDQIFRIDHY LGKEMIQNLLAFRFDNAIFEGVWNKDFIDNIQITLSEAVGVEERAGYYEKAGALRDMVQN HVMQVLSYLTMPKPKSFTATDILTEKDKVFAALRPYDLAAAKANFVQAQYVAAQIDGKTV PGYRQEEGVAPDSQTPTFVAGKILLDMPQWQGVPIYIRTGKRLTRKSTQITLTFKPVTAP LFSQAEASRPDSLTIYIEPSEGYSLQLNGKALGTGFDVEPDELRYRHDPTAAAAAPEAYE RLISNVLEGDQTNFTHWSELSASWRFIDAIQAAWSQETTMPTYPAATMGPKAAFDLLERD GREWFWQPRRVQLAD Prediction of potential genes in microbial genomes Time: Wed May 25 20:29:08 2011 Seq name: gi|225002454|gb|ACIZ01000125.1| Lactobacillus rhamnosus LMS2-1 contig00158, whole genome shotgun sequence Length of sequence - 4997 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 27 - 86 3.1 1 1 Op 1 3/0.000 + CDS 107 - 1420 1139 ## COG4109 Predicted transcriptional regulator containing CBS domains 2 1 Op 2 . + CDS 1427 - 2383 784 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 3 1 Op 3 . + CDS 2389 - 3735 1222 ## COG0513 Superfamily II DNA and RNA helicases 4 1 Op 4 . + CDS 3740 - 4675 777 ## LC705_00759 hypothetical protein Predicted protein(s) >gi|225002454|gb|ACIZ01000125.1| GENE 1 107 - 1420 1139 437 aa, chain + ## HITS:1 COG:lin1611 KEGG:ns NR:ns ## COG: lin1611 COG4109 # Protein_GI_number: 16800679 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing CBS domains # Organism: Listeria innocua # 1 436 1 437 437 375 47.0 1e-103 MATKHEQILDYIANLAVGKKISVRSIAKHLKVSEGTAYRAIKEAENTGFVSTIARVGTIR IEQKPLNPIESVTFKTLVDLIDAKVLGGQAGMDKKLDKFVIGAMTPAAMRPYITRNSLLI VGNREDAQRLALEDGAAVLITGGFETSSAIIALADDQQLPVLQTAYDTFTVATMINRALS DQAIKQDILTVAAIYTPLSQIETIGVEATVGDYLAMTDPHYPLPVVTRNGRLVGLMRPAL AAGKKPTVPIERLMQKDPQTVKPYLSVTTVGHTMQDNGMNAMPVVDDSWNLLGIVTRNAV FSSLTGIAHSRELTNTIADQVSAQLTAITPQKPYGGGFELKTVPAMTNTLGTMSFGVLAE AINSCTTRYLHDTGRRNVLVEGVNLTTFRPVQLESIVTVLLRVLELTRHDATLDVDVLSD GVQVAKAVVTCQLLERN >gi|225002454|gb|ACIZ01000125.1| GENE 2 1427 - 2383 784 318 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 6 312 7 311 311 306 50 2e-83 MIQTDIINAIKANNPIIIHRHINPDPDALGSQVGLAETIRASFPDKQVYQVGSDTGNLSW LAEEQTIKDDVYQNALVIVTDTADTPRISDSRFNQGKMLIKIDHHPNDDAYGDLVWVDNQ ASSASELIYDLIAASDGVLTLSDKAARLLYAGIVGDTGRFLFNNTTPHTLQVAAELIKKD FDPTAINNRMNTVTLGQARLQGYVIDHLKISPAGAASVTVPRTAINDLHLADDQVSAVVG TPGRLDTVVAWAEFIEQAEGGYRVHLRSKGPIINGLAKEHNGGGHPLASGAKAANFDEII QIETQLDQLVRDFSTTRK >gi|225002454|gb|ACIZ01000125.1| GENE 3 2389 - 3735 1222 448 aa, chain + ## HITS:1 COG:SP0761 KEGG:ns NR:ns ## COG: SP0761 COG0513 # Protein_GI_number: 15900655 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Streptococcus pneumoniae TIGR4 # 5 442 3 441 447 461 55.0 1e-129 MDNQFKQYQLKPFVIAGLDAMGITQPTPIQKKVIPALLRGENLVGQSQTGSGKTHAFLVP LLSLVDPNEDATQVVITAPSRELANQIYAVAQQLTQTEPAIRISRLVGGMDKQKQIDKLQ AHQPHVAIGTPGRILDMIKRYDLVPASVRHFVVDEADMTLDMGFLETVDAIASSFPEHLQ MAVFSATIPQKLEPFLRKYMDHPTVIELKPQSVIADTVENILIAAKGRDKNELIYQLVTM GHPFLVLIFANTKTSVDAIHDYLKHQGLKVAKIHGGVQPRERRRIMKEVADLKYQYVVAT DLAARGIDIKGVSMVINAEIPRDQEFFIHRVGRTGRNGLPGTAITLYEPGQEDQIAELEH MGIKFKPKTIQKGELVDTYDRNRRVQRKPKQEDTSLAIRGLVKKAKQKHMPNYRKKIRTA VLLERKRNAKVARRQALLAEKRKHLKRG >gi|225002454|gb|ACIZ01000125.1| GENE 4 3740 - 4675 777 311 aa, chain + ## HITS:1 COG:no KEGG:LC705_00759 NR:ns ## KEGG: LC705_00759 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 311 1 311 311 586 100.0 1e-166 MAVNELTLPTWNSLDEKRQRFIFQQLTRYFLSPLLTVDEIRPVTATFYGQTLHTFEAMIG GEWVRLIPGMAQVTLGFHAQQQEQLASYMQQSGLTVTDLTQALSPQREVAMPPMLVATKA TPANEEILGRISLTTRIFKGNHMRYAAIRAQVLRLLDRQGSLDPFAQSGWAASLTSGNIK LRLASAHHYQVSIVKSWQKADLIKSLSFFGFRLPTQDQYEYLQSGGRQSLFAFGNTLPPQ LPRYLPNPFGLTIPVERAGSELIAEDIQKSTVLPAQPSAKAALALSPFYQAEGADDLTVA SYRRVATVTVN Prediction of potential genes in microbial genomes Time: Wed May 25 20:29:19 2011 Seq name: gi|225002453|gb|ACIZ01000126.1| Lactobacillus rhamnosus LMS2-1 contig00159, whole genome shotgun sequence Length of sequence - 20737 bp Number of predicted genes - 23, with homology - 22 Number of transcription units - 10, operones - 6 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 288 - 1472 1219 ## COG0013 Alanyl-tRNA synthetase 2 1 Op 2 . + CDS 1474 - 2934 1367 ## COG0013 Alanyl-tRNA synthetase + Term 2964 - 3030 3.2 + Prom 3003 - 3062 5.2 3 2 Tu 1 . + CDS 3086 - 4189 552 ## LC705_00763 hypothetical protein + Prom 4207 - 4266 7.4 4 3 Op 1 6/0.000 + CDS 4293 - 4553 289 ## COG4472 Uncharacterized protein conserved in bacteria 5 3 Op 2 7/0.000 + CDS 4553 - 4987 437 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 6 3 Op 3 . + CDS 5034 - 5354 409 ## COG3906 Uncharacterized protein conserved in bacteria + Term 5374 - 5407 4.5 + Prom 5469 - 5528 1.9 7 4 Op 1 . + CDS 5552 - 5797 345 ## LGG_00772 stimulator of FtsZ polymerization and component of cell-division Z-ring 8 4 Op 2 3/0.000 + CDS 5810 - 6343 465 ## COG1286 Uncharacterized membrane protein, required for colicin V production + Term 6353 - 6397 7.2 9 4 Op 3 3/0.000 + CDS 6411 - 8771 2217 ## COG1193 Mismatch repair ATPase (MutS family) 10 4 Op 4 . + CDS 8839 - 9150 485 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 9167 - 9206 5.2 + Prom 9467 - 9526 5.4 11 5 Op 1 . + CDS 9551 - 9700 156 ## LC705_00771 D-Ala-teichoic acid biosynthesis protein 12 5 Op 2 6/0.000 + CDS 9715 - 11235 1549 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 13 5 Op 3 7/0.000 + CDS 11235 - 12452 1040 ## COG1696 Predicted membrane protein involved in D-alanine export 14 5 Op 4 6/0.000 + CDS 12522 - 12767 481 ## COG0236 Acyl carrier protein 15 5 Op 5 . + CDS 12764 - 14035 876 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) + Term 14098 - 14158 7.2 - Term 14085 - 14146 20.2 16 6 Tu 1 . - CDS 14171 - 14653 534 ## LGG_00781 hydrocarbon binding protein - Prom 14673 - 14732 3.4 + Prom 14693 - 14752 5.3 17 7 Op 1 . + CDS 14848 - 14976 66 ## 18 7 Op 2 . + CDS 14948 - 16402 419 ## PROTEIN SUPPORTED gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB 19 7 Op 3 . + CDS 16399 - 16923 439 ## COG0622 Predicted phosphoesterase + Term 16957 - 17012 3.4 - Term 16939 - 16997 8.6 20 8 Tu 1 . - CDS 17016 - 17747 569 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 17794 - 17853 9.9 + Prom 17757 - 17816 7.1 21 9 Tu 1 . + CDS 18035 - 18520 426 ## COG0517 FOG: CBS domain 22 10 Op 1 . - CDS 18572 - 19474 874 ## COG2035 Predicted membrane protein 23 10 Op 2 . - CDS 19526 - 20410 689 ## COG0668 Small-conductance mechanosensitive channel - Prom 20430 - 20489 2.3 Predicted protein(s) >gi|225002453|gb|ACIZ01000126.1| GENE 1 288 - 1472 1219 394 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 386 1 385 879 542 67.0 1e-154 MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDN PRITNAQKSIRTNDIELVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFDF DPKRLYVTVYPKDKGTKELWRKVGVADDHIVEAEDNFWDIGEGPSGPDSEIFYDRGQSFN NVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLVAVIQG TPTIFETDLFMPIIKATEKMSAGKRYGASAQDDVSFKIIADHARTVTFAIGDGALPSNEG RGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQPFIQKVIESEEA RFRQTLDAGVNLLNQIVAELKQKRKKRNFRCGCI >gi|225002453|gb|ACIZ01000126.1| GENE 2 1474 - 2934 1367 486 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 475 395 867 879 488 54.0 1e-138 MFDTYGFPVEMTNEYAEDEGLKVDMAGFKKNMAAQRDRARKARGDRQSMGSQDTVLMDIT TPSKFTGWTELDHKHATLQAIVVDDQLQDEVSTGQAQLIFDETPFYAEMGGQVADHGVIK AQDGTVLAEVTDVQHAPNGQNLHTVTVKGKLTKGQPYWLSVDRLRRKKVSLNHTATHLLD QALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVNQKIWDALPITWKEM PIAEAKKLGAIAMFGDKYGDVVRIVSIGDYNKEFDGGTHPTNTNALGLFKITSESGIGAG VRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNVPSKVTQLQADLKTEQKTVAGLQ AKLAAQAAAGIFDHAETVGGFKLIDKQVQVAGMNELRQLADEWKTKQASDILVLGTEANG KANLLVAANANANQAGLKAGDLIKAIAPKVGGGGGGRPDMAQAGGKKPAGIPAALAEAKN VIGQHA >gi|225002453|gb|ACIZ01000126.1| GENE 3 3086 - 4189 552 367 aa, chain + ## HITS:1 COG:no KEGG:LC705_00763 NR:ns ## KEGG: LC705_00763 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 4 367 1 364 364 676 99.0 0 MKALRLGMTDFLGSRELYRVVRQADSVKLTYTVDPSSTEGTIENELTGTDAEAFFNRLAT FDFASWRVLGEPQPPLLADTRWNLAITEDDERVLRYEGGQPFPDRFNELLSLLKYTVTVP GGHFLPPIAWQLDYVRFGTLQLPKFEGPRRFLSRQLRYRRTYLIEANENRVVLRTQYAEP LSDHDVVYHDPKLVAALASKVAAAVAELGEVADLSIDSTWQPRSVLALTIQYPHGEPTRI QVDAELNRTMKMLWQTVTEAIQAFQRSSEHRDQQDAIQLGPQLMHYIKVNFRHGVKDYLY KTDIPSLQEGDLVVVPVGNEGRTLHAEVTNPHVIPPIHFPVPPDKIKQVIGLADLDDDED EDEDDWC >gi|225002453|gb|ACIZ01000126.1| GENE 4 4293 - 4553 289 86 aa, chain + ## HITS:1 COG:SPy2114 KEGG:ns NR:ns ## COG: SPy2114 COG4472 # Protein_GI_number: 15675864 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 81 1 81 89 108 66.0 3e-24 MSTLDQTVHFDFRDNNPKNVHETLETVYKALEEKGYNPINQIVGYLISGDPAYIPRYNDA RNLIRKHERDEIIEELVRNYLGKEQA >gi|225002453|gb|ACIZ01000126.1| GENE 5 4553 - 4987 437 144 aa, chain + ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 136 1 136 139 192 69.0 1e-49 MRLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLTRLKELVTQYEVTAFVLG LPKNMNNSIGPRAEKSQAYGDLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ VIDKLAAQMILQNYLDAKGPLTKQ >gi|225002453|gb|ACIZ01000126.1| GENE 6 5034 - 5354 409 106 aa, chain + ## HITS:1 COG:BS_yrzB KEGG:ns NR:ns ## COG: BS_yrzB COG3906 # Protein_GI_number: 16079792 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 14 101 6 91 93 87 62.0 5e-18 MANNEHVKPGDDNQQITLIDEKGNEELYQVLFTFDSEDYGKSYVLLYPASEDDDQEVEIQ AFSFTPDANGDASSGDLFPIEDDKEWDMVEEVLNTFLADDDSNLQD >gi|225002453|gb|ACIZ01000126.1| GENE 7 5552 - 5797 345 81 aa, chain + ## HITS:1 COG:no KEGG:LGG_00772 NR:ns ## KEGG: LGG_00772 # Name: not_defined # Def: stimulator of FtsZ polymerization and component of cell-division Z-ring # Organism: L.rhamnosus # Pathway: not_defined # 1 81 1 81 81 136 100.0 3e-31 MSEEKRRFKAVIGDKAYTIIGPGSEQHFLTVTKLLNERLDQVKKLAPDLTAEEQAILVAF NAVSDQVKLLAAQQDHSDQKA >gi|225002453|gb|ACIZ01000126.1| GENE 8 5810 - 6343 465 177 aa, chain + ## HITS:1 COG:SPy1839 KEGG:ns NR:ns ## COG: SPy1839 COG1286 # Protein_GI_number: 15675665 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Streptococcus pyogenes M1 GAS # 1 177 1 177 181 81 29.0 6e-16 MISITIILVLAYFYYSGARRGAALQWLHVGGYALSFLAATALARPLGEHFTLLIPYPSAT NAGQFAFYSDKIGLTLDDAFYRGFAFLVVLTIGWLLTRIAALWFHDLTYKAMAHKKSALI GGWANLAIGYIFLFLILSLLALIPITGIQHGLDHSLVAKMMIKYSPGLTQFVNALWL >gi|225002453|gb|ACIZ01000126.1| GENE 9 6411 - 8771 2217 786 aa, chain + ## HITS:1 COG:lin1195 KEGG:ns NR:ns ## COG: lin1195 COG1193 # Protein_GI_number: 16800264 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 1 786 1 785 785 652 50.0 0 MNTKILRTLEYDKIQQAILRQVVTANGQKMVQNMTPQTDPEKVQRALDETADGASALRLK GGIPVPQLENIDPALKRVDIGAVLNGQELASISRVLQTVSAIDKFLTDLQDQIDFRQLYS LQAELTVLPQLSRRLKTAVDPEGTLTDEASPELHGIREQIKRIEGDIRGKMSEYTRGAQS KYLSDPIVTIRDDRYVIPVKAAYRVKFGGVVHDQSATGQTLFVEPQAIVALNNRLREAQM AETAEINRVLAELSNELAPYTGQIKANAAVLGHFDFINAKAKLAKAQKATEPLVSAENDV LLRHARHPLIDPHQVVGNDIPLGADYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIP ADDESRIGIFDEVFADIGDEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTD PQEGAALAIAILDAVGEVGAYVVATTHYPELKLYGYNTPKTINASMEFDSQTLQPTYRLL VGVPGRSNAFDISLRLGLPHTIVDRAKSMIGSDSHELNDMISDLEKQRKAAETARASAQR QLAAAQALHDELASAYHTFTTERDAQLHQAKEKANALVDKAQKKADKIIKQLRQMQLTNP GTVKENQLIAAKTDLKRLHQDEPLQKNRVLRREREKQALHVGDEVKVASYDQTGTLLQQF DEHHWQVQLGILKMKVPTTELEKIKPSKQVAKQRPVVKVSGGGMSGPSTTLDLRGERYDQ AMADLDQYIDAALLAGYPSVTIIHGLGTGAIRNGVTQYLKRHRQVKSFGFAPQNAGGSGA TIVNFK >gi|225002453|gb|ACIZ01000126.1| GENE 10 8839 - 9150 485 103 aa, chain + ## HITS:1 COG:lin1196 KEGG:ns NR:ns ## COG: lin1196 COG0526 # Protein_GI_number: 16800265 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 101 1 102 103 132 58.0 1e-31 MVQAVTDSNYKTETDTGVTLTDFWATWCGPCRMQSPVIDKLAESRDDVKFVKMDVDANPE TPKSFGIMAIPTLVIKKDGKVVEKLVGYQTKDQLEATLNKYTA >gi|225002453|gb|ACIZ01000126.1| GENE 11 9551 - 9700 156 49 aa, chain + ## HITS:1 COG:no KEGG:LC705_00771 NR:ns ## KEGG: LC705_00771 # Name: dltX # Def: D-Ala-teichoic acid biosynthesis protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 49 12 60 60 74 100.0 9e-13 MFAKLKAVWENPTFRFIFWTVTYFVILLVLVYLYGYSGINNSKFIYNEF >gi|225002453|gb|ACIZ01000126.1| GENE 12 9715 - 11235 1549 506 aa, chain + ## HITS:1 COG:SPy1312 KEGG:ns NR:ns ## COG: SPy1312 COG1020 # Protein_GI_number: 15675261 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pyogenes M1 GAS # 1 506 1 511 512 510 50.0 1e-144 MIDNVITAIDRVAAEHPTRVAYDYEGTQYTYAQLKEGSDRLAGFFAESLPAGEPIIVYGG QTFDMVEVFLGLSKSGHAYIPIDTHSPNERITQVQDVAHAPAVIEVAPLPITVPDVKIIR APALHQAEQSHAPIHSLQHAVAGDDNYYIIFTSGTTGKPKGVQISHDNLLSYVNWNISDF GLEEGVVAMSQPPYSFDLSVMDLYPTLVLGGTLKALPKEVTDNFKELFATLPKLGLNEWV STPSFVEIALLDPNFKQENYPNLTHFLFCGEELVNKTAQALITRFPKATVYNTYGPTEAT VAVTGMVITQAIVDQYPRLPIGYAKPDTNVYVVDEQGEQVSAGTEGELMIVGPSVSKGYL NNPDKTAAAFFKAGNQRGYRSGDLVTMTADGMVFYRGRTDFQVKLHGYRIELEDVDHNLN QVSYIKQASTVPRYDKDHKVAQLIAFAVAKPNDFDSEMKLTQAIKAELGKMVMEYMIPQR IIYRDQLPLTANGKVDRKALIAEVNH >gi|225002453|gb|ACIZ01000126.1| GENE 13 11235 - 12452 1040 405 aa, chain + ## HITS:1 COG:SPy1311 KEGG:ns NR:ns ## COG: SPy1311 COG1696 # Protein_GI_number: 15675260 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pyogenes M1 GAS # 4 405 11 414 418 346 50.0 4e-95 MLNLQPYENPQYFVYLIIALLPVIIGMFKGFRMHWYESIFSLVFLVLIFDADKWPQGKAL LGYVVFNLLLVYAYFKYRTREGSKNSTAVFYLSVALGIAQLAVVKFTPLFQHHGSILGFL GISYLTFRVVGTIMEIRDGSIKDLNMWKFIQFLLFFPTISSGPIDRYRRFVKDYDRVPDP EHYAQLVTKAIHYLMLGFLYKFILGYIFGTLWLPSVEHMAMASRGGAFLGLSWPVVGVMY AYSGYLFFDFAGYSLFAVAISYLMGIETPMNFNKPWMSYNIKDFWNRWHMSLSFWFRDYI YMRFVFFMMKHKWIKSRVWTAFVGYLVLFLIMGIWHGETWYYIVYGLFHAMLINLTDAWL RFKKKHKDFFPHNRATHYFAIFMTANAVCFSFLIFSGFLDKLWFH >gi|225002453|gb|ACIZ01000126.1| GENE 14 12522 - 12767 481 81 aa, chain + ## HITS:1 COG:lin0971 KEGG:ns NR:ns ## COG: lin0971 COG0236 # Protein_GI_number: 16800040 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 78 2 75 78 72 51.0 2e-13 MADEAIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVS EFDRKEWDTPNKIIAKVEQAQ >gi|225002453|gb|ACIZ01000126.1| GENE 15 12764 - 14035 876 423 aa, chain + ## HITS:1 COG:SPy1309 KEGG:ns NR:ns ## COG: SPy1309 COG3966 # Protein_GI_number: 15675258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Streptococcus pyogenes M1 GAS # 7 417 3 412 416 304 41.0 3e-82 MKKPIGKILWRGLGPLLIAIILVAALMLVPFKFGRSSQATIRQAASSMSANVLKGETIKN EAMAENYVPFIGSSELSRMDAFHPSVLAQKYHRDYRPFLMGMAGTQSLTHFLSINALTHV EGKKAVMVLSPQWFVPGGVRKAQFDYFYSPAQMTTFLLHANPNSEADRFAARRLLQFPST DSDRTVNEALKNIAAGQKLSDGQYWYLKQVKDPMADHQDALFSRLFLNNNQPQLDKAAKT LPSTYDVDDLDGLATRMGMQETTNNPFELKNDFYTKRVKRNMPKLKGSQATWSYVKSPEY SDLQLVLNTFAKKHMEVLFVIPPINAKWAAFTGLDLGMIQNTVTKMKYQLKTQGFNHVLD LSQDGAQPYFMEDTIHIGWRGWLKMDQTVRPFLKTTKAAPVHYKLNDQFYTKHWQQQSAN GLD >gi|225002453|gb|ACIZ01000126.1| GENE 16 14171 - 14653 534 160 aa, chain - ## HITS:1 COG:no KEGG:LGG_00781 NR:ns ## KEGG: LGG_00781 # Name: yslB # Def: hydrocarbon binding protein # Organism: L.rhamnosus # Pathway: not_defined # 1 160 1 160 160 304 100.0 9e-82 MAKSDYTTLLNLPGSVSFFAITAMRDLMLPNMLGEEQHHILYWAGRDLATKLPVAESALP QLFTQVGLGTLSPLKQKRQERQYLLAGDVVATRIRTYDDPDFQLEAGFLAQALQQVFGFA VEGGSAIQRREQNVVLTVVMDNKDAQPTAKHLIDLASDQS >gi|225002453|gb|ACIZ01000126.1| GENE 17 14848 - 14976 66 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGWRERVADSGFLDTATTNRRSCRHQVIQKENYDEQATNRIY >gi|225002453|gb|ACIZ01000126.1| GENE 18 14948 - 16402 419 484 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biovar Orientalis str. IP275] # 259 472 5 216 223 166 44 2e-40 MNKQPIGFIDSGVGGLTVVKEALHQLPAENTIYLGDQARLPYGPRPAEQVQAFTWQMVNF LLTKHIKMLVIACNTATAAALPLIKARLKIPVIGVIKPGSRAALKATQTGHIGIIATEGT VKSGAYPKALRAKAPNIRLTSLAAPKFVSLVESNEAHSPIAKRVVADTLQPLLHQDIDTL VLGCTHYPILRPIIQNVMGEDVTLIDSGAETVNDVSMLLDYFDLANDGSEVPTHTYYTTG APSMFDELGESWLELKKPMHAQHVDIDTQPTHFVEPTSEATDKTIVIASKNPGKIKEFKA MFEPAGVTVKSLADFPTVPTVDETGTTFEANARQKADQYAQDLNLPVLADDSGLMVDALD GQPGIRSARYAGDGHNDAANNAKLLAALADVPEEARTATFHTTLVLAKPNHPEADLVVHG DLSGRITAIPRGTDGFGYDPFFLVPALDKTLAELTADEKNEISHRGNAMRALEKVWQAWL EENV >gi|225002453|gb|ACIZ01000126.1| GENE 19 16399 - 16923 439 174 aa, chain + ## HITS:1 COG:SPy0363 KEGG:ns NR:ns ## COG: SPy0363 COG0622 # Protein_GI_number: 15674513 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Streptococcus pyogenes M1 GAS # 3 169 6 171 173 119 37.0 4e-27 MKILAVSDTHGDRDILAAILKQQPNLDGYFYAGDSELPANDPLFKIYRAVAGNMDFDPDF PMTVTATIDNTTIFMTHGHRFGVNFGLDKLVAAGEAAHARLVIFGHTHQLGVEEHAGMIV LNPGSISQPRGQFANLGGTYATVTFTSDQIHVDFLKRDGSIVAPLSRDFLQSSH >gi|225002453|gb|ACIZ01000126.1| GENE 20 17016 - 17747 569 243 aa, chain - ## HITS:1 COG:CAC0770 KEGG:ns NR:ns ## COG: CAC0770 COG0580 # Protein_GI_number: 15894057 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Clostridium acetobutylicum # 1 242 1 242 242 266 55.0 4e-71 MTYDLGVRLAAEFIGTAVMVLLGNGSVANVDLKGTKGNGSDWLLIAVGYGAGVMIPAMMF GAISGNHINPAFTLGLAASGMFPWSEVLPYIAVQMAGAMVGQLLVVAAYKPHYDLTTNTQ HILGTFSTISATKSKLNGFVNEFIGSYILFIGALGITKAPFFQNNLGTAHMGLGFLVATL VASLGGPTGPALNPARDLGPRILHALLPLKHKGSSDWGYAWVPVVAPIAAAILAVLTYKI LFL >gi|225002453|gb|ACIZ01000126.1| GENE 21 18035 - 18520 426 161 aa, chain + ## HITS:1 COG:lin1008 KEGG:ns NR:ns ## COG: lin1008 COG0517 # Protein_GI_number: 16800077 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 4 142 8 143 150 113 50.0 1e-25 MLNQVIANMLVENRHHFMIAADMVATVSENNPLSHAFLVLTKVRYAKIPVLDHDSKFKGL ISLPMITDTMLGLDHISFQSLDTMTVKDVMQTDVATINDPYDLETVLHLLVDNPFIPVVQ DGYFTGIVTRREVMKGINNIGHNIDKQFQLEPVTPVTEKES >gi|225002453|gb|ACIZ01000126.1| GENE 22 18572 - 19474 874 300 aa, chain - ## HITS:1 COG:TM0164 KEGG:ns NR:ns ## COG: TM0164 COG2035 # Protein_GI_number: 15642938 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Thermotoga maritima # 4 253 6 221 264 90 27.0 3e-18 MLNFIKGAIIGIALVIPGLSGSIFAVVVGLYDRLLNALNHFRANPRKNLRFLTPVGLGAI VGILLSTKAVLVITTHWPLPSYGFFIGLVLGIGPFIYRKLVLKPFSWWYLLLVLGGFIAI YGLAKLGGTQPENLIAIQRLSSVQDAAIMGFSGIFAVSLMAIPGISGSVMLMVIDQYGTV YHAVSQLGDAARALVAGNWAGFTSAMGSVALLVPFMVGALIGLIAIAKLMGYLLEHFEVE VYYSVCGIVAAAVVILIETGIAPYWPTTGTLAAVLAVLVSLVIGVLATVFLDKPESDRDA >gi|225002453|gb|ACIZ01000126.1| GENE 23 19526 - 20410 689 294 aa, chain - ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 19 285 5 271 281 211 43.0 2e-54 MIRTIFTTATVTGQSNVWLRYFTKINWDQIAGTLIDKVLSLLFFSILFLALYRLGQFAIN RTFKSYQHRAKLSGTRVKTIHALSKNLFFYFVLFFYFYAILSTLGVPVGTLLAGAGVAGL AIGFGAQGFVNDVVTGFFILLEAQFDVGDVVKLGTISGTVTSLGLRTTVVKSYDGTVNFI PNRNITIVSNLSRSNMQVLIKLPLAPTTDLDLVRRTIEHVNHNLVPKFSTITDGPDILGL TEEKNGTFTYQVLFYAENGEQVSLQRTFLAAYIAALKSAGIHVITPPLNLQAGS Prediction of potential genes in microbial genomes Time: Wed May 25 20:29:37 2011 Seq name: gi|225002452|gb|ACIZ01000127.1| Lactobacillus rhamnosus LMS2-1 contig00160, whole genome shotgun sequence Length of sequence - 7568 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 65 - 124 6.0 1 1 Op 1 . + CDS 155 - 583 541 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 2 1 Op 2 . + CDS 598 - 1098 573 ## LGG_00790 hypothetical protein + Term 1126 - 1183 0.1 3 1 Op 3 . + CDS 1237 - 1770 465 ## COG1827 Predicted small molecule binding protein (contains 3H domain) + Term 1827 - 1875 13.4 - Term 1814 - 1863 8.1 4 2 Tu 1 . - CDS 1924 - 3027 1135 ## COG0006 Xaa-Pro aminopeptidase + Prom 3273 - 3332 4.0 5 3 Tu 1 . + CDS 3382 - 4383 991 ## COG1609 Transcriptional regulators + Term 4432 - 4494 19.1 - Term 4491 - 4524 0.4 6 4 Tu 1 . - CDS 4545 - 7289 2342 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 7320 - 7379 5.7 Predicted protein(s) >gi|225002452|gb|ACIZ01000127.1| GENE 1 155 - 583 541 142 aa, chain + ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 10 142 3 135 135 85 39.0 2e-17 MSGGEIAWIIAATAFLIIALAIAIIAVRVSGVTKEVKETVAETNKTLDTINGELGILTKE VEGLLAKSNTLLEDVNGKVAAIDPVFTAIGELGESVSDLNQSTRQLTQRVTNGAKNGAKA TVAARMGAKAFSMLTKKKHQNE >gi|225002452|gb|ACIZ01000127.1| GENE 2 598 - 1098 573 166 aa, chain + ## HITS:1 COG:no KEGG:LGG_00790 NR:ns ## KEGG: LGG_00790 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 166 1 166 166 222 99.0 4e-57 MAKKGHFLLGFVFGAASALATTYLLTPQTSDELKRRVKHASENLADRAVDYFDYAKEASA DWKQSATDFVDEIKTRGNDADGSQALANYDAATEQLRDQLNTANDTDTSADFDDIVLDGK SAFAQAKDDDEGSETRTDEVPEPTKPVTIKEASADSAAADSQAADK >gi|225002452|gb|ACIZ01000127.1| GENE 3 1237 - 1770 465 177 aa, chain + ## HITS:1 COG:CAC0009 KEGG:ns NR:ns ## COG: CAC0009 COG1827 # Protein_GI_number: 15893307 # Func_class: R General function prediction only # Function: Predicted small molecule binding protein (contains 3H domain) # Organism: Clostridium acetobutylicum # 1 156 1 158 171 137 42.0 1e-32 MLNSERQAHIKAALSTAAEPLSASSFARRFTVSRQTIVGDIALLRAQGEPIIATPRGYTL SQPAALEFLVPCKHTPAQTEQELQLILDNGGWIEDVLVEHPLYGQLRGQLNIRTVADMKL FLSRVARYHGHLLSELTGGIHLHSISVKQKSDIAKIKMALHQAGILYEQLEEAADQG >gi|225002452|gb|ACIZ01000127.1| GENE 4 1924 - 3027 1135 367 aa, chain - ## HITS:1 COG:lin1613 KEGG:ns NR:ns ## COG: lin1613 COG0006 # Protein_GI_number: 16800681 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 1 365 1 364 365 354 49.0 2e-97 MNEHLAALQTWIGEEGLDLAYISDPININYYTGFFQDPEERITALIVAPDHDPFLFTPQL TIEEVKKAGWAYPVFGYLDHEDPFAKLASHIKTVNPNPTKWAIEKDNLAVFKFEAIMKQF PDATFPIDASRFIEKQRLIKTASEIKQMEAAGAQADRAFQAGFNAIKAGATEQEVAAEID YAMMKEGVMHMSFGTIVQAGVDAANPHGEPMGTKLAPNELVLFDLGTDNHGYMSDATRTV AFGQVTGKPREIFDICLEANLTAMDAVKPGLKASELDKIARDIITKAGYGEYFNHRLGHG IGMSTHEFPSIMEGNDMILQPGMCFSIEPGIYVPGVAGVRIEDCVHVTETGCEPFTHTSK EFTVING >gi|225002452|gb|ACIZ01000127.1| GENE 5 3382 - 4383 991 333 aa, chain + ## HITS:1 COG:lin1640 KEGG:ns NR:ns ## COG: lin1640 COG1609 # Protein_GI_number: 16800708 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 6 333 3 332 335 395 61.0 1e-110 MEKQTITIYDVAREANVSMATVSRVVNGNPNVKPATRKKVLEVIERLDYRPNAVARGLAS KKTTTVGVIIPDVTNMFFSSLARGIDDVATMYKYNIILANSDENNQKEVSVLNTLLAKQV DGLIFMGHELTDAIRAEFSRSKTPVVLAGSIDPDEQVGSVNIDYVAAVEEATRQLIESGN KRVALATGSLTHPINGQFRLKGYKQALEKAGVAYDESLIFENEPSYQAGLALFGKLQKVG ATAVIAGDDELAVGILDGALDKGVKVPEDFEIISSNNTKLTEMTRPQLTSIDQPLYDIGA VAMRLLTKMMNKEEIEEKTVMLGFDILKRGSTK >gi|225002452|gb|ACIZ01000127.1| GENE 6 4545 - 7289 2342 914 aa, chain - ## HITS:1 COG:SPy0097 KEGG:ns NR:ns ## COG: SPy0097 COG0744 # Protein_GI_number: 15674320 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pyogenes M1 GAS # 47 794 26 759 770 436 37.0 1e-121 MKKFVNRVKTLGTRFCRWFTQFVTRHPDSKADTNQQLTGKAAVVYYGNVTLQSIKTTVYY LLGVLGIAVVFGLGLFGGYFVSIIDATPIPTETAMKATLSNTSRTSSMYFAHNVKLSDVK SDLYSTKVNLNEMSPWLTKAIIATEDEDFYRHNGIVPKAVIRAFFSDLTGMGSQTGGSTL TQQVVKMMFLNSETTFKRKAAEIMLARRLNNHFSKNTILATYLNVATLGRNNKGQNIAGV EAAAQGLFGVSAKEVNLPEAAFIAGLPQSPFVYTPYTADGKLKTSLKAGINRQQTVLFRM YRAGVISHRQYVAAKSFDLKGAFLQPEKADQDDDEYGYVYNMVLSEAKSLLAEKLAKSDG HSAAELAKDSALNNDYLRQAGDLFASKNYRIKSTIDKDVYDRMQFVMRATRDTFGQTYTS SQINPKTGETETVKYPVQNGSVVLDNQTGAVLGFVGGVTGELNHIYTLRSPGSTIKPLLV YAPAIDQKIIGSQTALADFKTNLGNNYSVTDYGGQIQNRFIPATEALAQSYNIPAVNLYK HIKPSVNVKAYMEKMGINTLTDNDYSQLGLALGGTDYGVDVKEQASAFSTFANQGEHVPA YVISEIVDPSGHAVYRHQVKKTKVFSKGTNYIMNQMLKNVVASGTAESLNYQLRFNTDNL IGKTGTSNDFRDIWFIGSTPGITIASWMGYDNSNGTNYTLTENSSMTNEAYWAKLANAVY HTIPKKFKADKKLSRPSTVKSVTVDKQTSQPAASLSFNGHTYRTGGSTVTSLYNDWEPTA KAEFAIGGSKDNYQLFYDYLDGKSNGYGQVSDANGRSTEAKKEHQETPITTETPSSATVS SSRTPSVTVPSSQQNQQGTSENQPSEPQTTGTGGNNGTTGGGTGTEAATTSSAPTTGGTT TTPQTPSTNTGTGH Prediction of potential genes in microbial genomes Time: Wed May 25 20:29:46 2011 Seq name: gi|225002451|gb|ACIZ01000128.1| Lactobacillus rhamnosus LMS2-1 contig00161, whole genome shotgun sequence Length of sequence - 15534 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 8, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 56 - 115 3.3 1 1 Tu 1 . + CDS 146 - 829 670 ## COG1011 Predicted hydrolase (HAD superfamily) + Term 930 - 966 7.1 2 2 Tu 1 . - CDS 846 - 1592 724 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase - Term 1614 - 1668 12.8 3 3 Op 1 . - CDS 1738 - 3141 1282 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 3169 - 3228 2.9 - Term 3233 - 3268 0.2 4 3 Op 2 . - CDS 3277 - 4617 956 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 4638 - 4697 4.0 5 4 Tu 1 . + CDS 4728 - 5042 319 ## LGG_00800 hypothetical protein + Prom 5163 - 5222 5.3 6 5 Op 1 3/0.000 + CDS 5244 - 6311 813 ## COG5438 Predicted multitransmembrane protein 7 5 Op 2 . + CDS 6308 - 7045 593 ## COG5438 Predicted multitransmembrane protein 8 5 Op 3 . + CDS 7047 - 7649 510 ## COG4186 Predicted phosphoesterase or phosphohydrolase 9 6 Op 1 2/0.000 + CDS 7762 - 9138 1173 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 9182 - 9223 0.7 + Prom 9145 - 9204 1.9 10 6 Op 2 1/0.000 + CDS 9241 - 9849 495 ## COG4470 Uncharacterized protein conserved in bacteria 11 6 Op 3 3/0.000 + CDS 9858 - 10634 732 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 12 6 Op 4 . + CDS 10635 - 11267 363 ## COG4478 Predicted membrane protein + Term 11272 - 11320 8.4 - Term 11260 - 11308 8.4 13 7 Op 1 . - CDS 11328 - 11981 162 ## PROTEIN SUPPORTED gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 - Prom 12005 - 12064 7.0 14 7 Op 2 . - CDS 12067 - 12570 593 ## COG1267 Phosphatidylglycerophosphatase A and related proteins 15 7 Op 3 . - CDS 12665 - 13651 847 ## COG0492 Thioredoxin reductase - Prom 13703 - 13762 3.3 + Prom 13787 - 13846 5.2 16 8 Op 1 3/0.000 + CDS 13886 - 14470 610 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 17 8 Op 2 . + CDS 14534 - 14917 246 ## PROTEIN SUPPORTED gi|212640210|ref|YP_002316730.1| Predicted RNA binding protein (contains ribosomal protein S1 domain) + Term 14978 - 15015 -0.9 Predicted protein(s) >gi|225002451|gb|ACIZ01000128.1| GENE 1 146 - 829 670 227 aa, chain + ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 2 224 4 227 235 174 40.0 2e-43 MYRIILFDVDDTLLDFKAGELKSLAKMFAKLKLTYTPRIEASYLKINANLWRDYEAGRIT RPELFDVRFAKLFRHHRIDADPHLAERTYHHFLDQEAILLPHVMETLDALKDYRLFIVSN GIEPVQRQRLATSGLIDYFEDIFVSDSVGSPKPTVAFFDYVAKHIPRFNRNETLIMGDSL TSDIQGGINGKIDSIWFNPHFQPNRDQITPTYQLNEFSDLTKLLLAN >gi|225002451|gb|ACIZ01000128.1| GENE 2 846 - 1592 724 248 aa, chain - ## HITS:1 COG:MTH1916 KEGG:ns NR:ns ## COG: MTH1916 COG0340 # Protein_GI_number: 15679898 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Methanothermobacter thermautotrophicus # 26 237 27 250 261 96 31.0 3e-20 MFTPHALDPWLDDPHLRAAVATQATVTSTNTVLKHAVQNNSTVPQILIAGEQTAGVGRHG KHFASPADAGLYLSYAFHPQISQSLITPAAGVALQQAIETQFGIVTAIKWVNDLQKGGRK VAGILAEALIEHNAVVLGIGVDLFPAQSAVLPTDQPITTLLANQPDSDPRPELAGRFLTN LMRLFANPETIMPIYRAKAAWVGRRITVNGTQNPLTGTISGFDDNGALLLQTAQGTMVVT SGTIRLAD >gi|225002451|gb|ACIZ01000128.1| GENE 3 1738 - 3141 1282 467 aa, chain - ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 2 467 3 469 469 436 49.0 1e-122 MTINWQQEAEKLEPQLLSDLTTLLKINSERDTDHQTDEYPLGPGPAKALEAFLTIAQRDG FKTLNVDHVAGRIELGDGDEIFGLFGHVDVVPAGPGWQTDPFDPVIRDGKIYGRGTSDDK GPSIAAYYALKLIRDLKLPINKKIHFILGTDEESDWVGIHRYLETEPAPDFGFSPDAEFP IINGEKGIASFEIVQKPIAAATADLTLNHFSAGIRPNMVPQEAKAVISGPLPEAFMTQAE KWAAEQEVALTLTPGNPTTIELIGKGAHAQEPKDGKNAATYLATLLADLPFDPAGKAYLT MIANHLHLDSRGHHLGINYTDKLMGDLTASPDIFTFTQDGPQSVLVNVRYPQGTDAAKIR DQIETALGADQYNVAVSGHAQEPHYVSGDDPLVKTLLQTFSDHTGIPGHEQVIGGGTYGR IIKRGVAFGAQMPGQENVMHQANEYMPIKDIVAAVAIYADAISRLVK >gi|225002451|gb|ACIZ01000128.1| GENE 4 3277 - 4617 956 446 aa, chain - ## HITS:1 COG:BH3700 KEGG:ns NR:ns ## COG: BH3700 COG0584 # Protein_GI_number: 15616262 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Bacillus halodurans # 24 243 42 272 284 112 30.0 1e-24 MGKRLKLIVFLVPLFLLLSGFTLVGHRGDPLNYPEETFQSFDSAFNNGADYVELDVHESA DGVIVIQHDTTIQRTTGANLAIAKTNFAQLQQYHTKNGEPIHSLEELFAHEQQTKHKFLI ETKIVKGEPHPHLEDKVAALIKQYHMENRVMFHSFSAASLKRLQAVLPNIPRILIVGSLK RINFDVLTYVDGINLSSDLVTPQLVTQLHDLGKKVYVWDEMNEDRAKWTWLVNLNIDGVV TNYTSLGHEFQTLKAAAVTTSINDLGANSSLAALPVYENPYQPLLRSERLAPQTPIMISS MVSLAGSTYYQIGDNAFVPAETINLAPEAGWASLFLHQRIVITSRHFKVPVHADPLHQQA ITGHVGNHKCYWVLAARYQSGQLYLKTKIGWLNAKDLQVLPTAENMHIWLTLYRSIPENQ KPLLHWALGDTAFDTPLLNASVLNIG >gi|225002451|gb|ACIZ01000128.1| GENE 5 4728 - 5042 319 104 aa, chain + ## HITS:1 COG:no KEGG:LGG_00800 NR:ns ## KEGG: LGG_00800 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 104 1 104 104 209 100.0 2e-53 MAEKYQVFDLIQEITRLDGSRYFELGNVMMNGRAEKAAMKGFIKRVRIVQLNIAHSTAVT TYEKYINEHYEFPPADLTSWEEWDKPEGPIRDAYHEILKQNHVG >gi|225002451|gb|ACIZ01000128.1| GENE 6 5244 - 6311 813 355 aa, chain + ## HITS:1 COG:L16606 KEGG:ns NR:ns ## COG: L16606 COG5438 # Protein_GI_number: 15672789 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 6 341 30 375 393 169 32.0 1e-41 MKYIGKWLLPFIAAIAVFIGMQFDSGLYTKPIGRVEAVKVVKTESHQDEDQNHDRLVRQQ VQVRLLNTANRGRRVTMHNTYSFSGGLDNQLRVGEQVFLDVNKGTYTLNNVKRDAILAGL LVLTFGLIFLVMGRRAWLTSISILLNTLIFFAAVEWEIGSKQWQAWWLFVGLAVVFTVLT AVFIVGFKAIAVAISLGSLVATGLAVALGYGIMAMTNYNGVHFEEVKYATQTPQLLFFAQ VVIGSLGAVLDEASDISVAIFQLHETAKERFRAGMAIGRNVMGPLISVLFMIFIADTFME SVLWIRNNNSIAQTVIWVMGLGFAQSLISAFGIVLAVPVTSGLAALMAKIKKVTA >gi|225002451|gb|ACIZ01000128.1| GENE 7 6308 - 7045 593 245 aa, chain + ## HITS:1 COG:L17781 KEGG:ns NR:ns ## COG: L17781 COG5438 # Protein_GI_number: 15672790 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 1 235 1 242 253 112 32.0 5e-25 MNAILALALVLVVMMFIVGGKQGLANFFALAANALLMILVVILMASGFNPIIVAVIFGLI ILAATIFLSTNQLNVAGPAFVSALLIMTLLVGLILVVMTLSQTAGFGPEDSESLEGFSVY IGVSFPHILIATTLLGTLGAIAEAAIAVAAGMDEIKDQASSAGIKQMGHEIIGTALNTLF FGFFGGFSSLFIWFASLRYPFSQVINNKIFVGELLQVLISVIAVILTVPMTTWVVATRHA HRRKE >gi|225002451|gb|ACIZ01000128.1| GENE 8 7047 - 7649 510 200 aa, chain + ## HITS:1 COG:MJ1445 KEGG:ns NR:ns ## COG: MJ1445 COG4186 # Protein_GI_number: 15669636 # Func_class: R General function prediction only # Function: Predicted phosphoesterase or phosphohydrolase # Organism: Methanococcus jannaschii # 3 133 7 136 176 70 33.0 2e-12 MQYFIADTHFFHADLLGDNDFAPRLFPSVEAMDDAMIQAWNARVDDRDVVYHLGDIAMNP EHFPQPPEVLAILLQLHGRIVFIKGNHDYESLFKYLHRHDPGVNGLPKFTFHSVGTIIKD DHTQFIMTHYPLMMGIVKQTLNLHGHIHHNSVNIAENINVGVDAPERDLLVPHLPFGTPL TAAEIHEIYRLKVAVLSKER >gi|225002451|gb|ACIZ01000128.1| GENE 9 7762 - 9138 1173 458 aa, chain + ## HITS:1 COG:lin2502 KEGG:ns NR:ns ## COG: lin2502 COG0737 # Protein_GI_number: 16801564 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Listeria innocua # 1 456 2 457 463 317 37.0 3e-86 MEKLVILHTNDLHSHFENWPKIRRFMLGTRAAEQAQGASVLAFDDGDAMDRSVPLTEATD GQINIQLLNEIGYDAVTIGNNEGVGNPHAVLEHLYDHANFPVALANLFEPDGTRPRWAKP VVMKQTPAGTRVAIVGFTAPFFLTYEPNGWQVKTVADVFPAILKQLEGSYDVLVVLSHLG IEADRHLAQHYPQIDVIIGGHTHHLLPEGELHGTTLLTAAEKYGHYVGKITLTLNDDHHI QTRRAETFQTALLQSAAADPREIQGYESKGIALLKQQQVAHLPKQLAISYDRPSPLLDFG LAAVAATAQTDAAILNAGLFLTPLGPGVVTQADLLACLPHPMHLLKVTLSGKELWRLIME MEKNRMFLRHFHMIGMSFRGKIFGDIGYRGITVDREKRRVLWQGEPLIPEKQYTFATVDN FLFIPFFPTIEIMGSNELLFPKILRQVIGDYMAKVYPR >gi|225002451|gb|ACIZ01000128.1| GENE 10 9241 - 9849 495 202 aa, chain + ## HITS:1 COG:lin2501 KEGG:ns NR:ns ## COG: lin2501 COG4470 # Protein_GI_number: 16801563 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 33 117 3 87 91 125 67.0 5e-29 MGERSPLSEQIDDALIPALKKDLRIVNVGHDLITIDGRRYRIVENYRDACDLERLNERYN DILDKYDFIVGDWGYDQLRLRGFYKDDRRGASKDQLISTLEDYLYEYCNFGCAYFVLACL DKPAPKSSPRRQGRDQHSQTTKNAQRKHANKHPLHGKRKANKPYTEKSVRSPQFRGEQAK TVHQNQPRKRHFTIRQRETNKK >gi|225002451|gb|ACIZ01000128.1| GENE 11 9858 - 10634 732 258 aa, chain + ## HITS:1 COG:SP1407 KEGG:ns NR:ns ## COG: SP1407 COG0647 # Protein_GI_number: 15901261 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 257 1 253 257 259 52.0 2e-69 MKYKGYMIDLDGTIYRGKERIPAAKDFVERLQAARIPFLFLTNNTTKSPEDVVDNLAKNH DIHVTPDQIYTPSLATAAYLTDLNHGDVSGKSVYIIGELGLKQALLDTGLRLNEVDPDYV VVGLDYDVTYHKFELATLAIKRGAKFIGTNADTNLPNERGLVPGAGSLIALVERSTQQRA FYIGKPEPTIMEKALKKMGLPKDSVAMVGDNYNTDIKAGLNAGIDTILVYTGVSTRDYVS KQVHQPTHQIDQLTDWEV >gi|225002451|gb|ACIZ01000128.1| GENE 12 10635 - 11267 363 210 aa, chain + ## HITS:1 COG:L157321 KEGG:ns NR:ns ## COG: L157321 COG4478 # Protein_GI_number: 15673126 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 8 200 5 197 205 109 36.0 3e-24 MKRAGQWVVLWLAIISTVILVTILSTLLTFPIYAHMDDLPQIAAMSLGRLYHNYLQLMAY LNFPWIGTLRMQDFPTSLHGAVHFADVRRLFIFDILVALVTLPFAIRWLHRLKATSKRYL LVRPFMIGAVVPIGLTALLAMNFDRFFIVFHEMLFRNQDWLFDPATDPIINVLPEGFFML CFLLAFGLFEAVMIWGIWRGRQDARLGSKQ >gi|225002451|gb|ACIZ01000128.1| GENE 13 11328 - 11981 162 217 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 [Campylobacter rectus RM3267] # 11 195 2 185 208 67 28 8e-11 MTQLFDFILHIDEHLITIVNSFGPWTYVILFAMVFIETGVVVFPFLPGDSLLFAASALAA NAAYNLNVWILFAVFLAAAVLGDTVNYEIGKRVGSAASTGKGWFGRLINHDKLRQAEAFF DKHGGKTIAIARFMPLIRTFAPFVSGGSRMHYGKFIHYNLLGGFLWVTLCVLGGFYFGNV TFVKEHFSLVALGIVLISLLPMVIAAVKTRTAKVADR >gi|225002451|gb|ACIZ01000128.1| GENE 14 12067 - 12570 593 167 aa, chain - ## HITS:1 COG:BS_yutG KEGG:ns NR:ns ## COG: BS_yutG COG1267 # Protein_GI_number: 16080281 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Bacillus subtilis # 15 157 18 160 166 187 67.0 8e-48 MTNEEKLYERTIQLLHERGVQLSDIGELVMFLQERFIPKLTIEEATQNVRIVLRKREVQN AVMTGIALDKAAEANSLEEPLQKIIAEDEGLYGVDEVLAFSIVNVYGSIGFTNYGYIDRI KPGILAKLNAHEPGIIHTFLDDIVGAMAAAAASRLAHSHPEIEDDIY >gi|225002451|gb|ACIZ01000128.1| GENE 15 12665 - 13651 847 328 aa, chain - ## HITS:1 COG:lin2489 KEGG:ns NR:ns ## COG: lin2489 COG0492 # Protein_GI_number: 16801551 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Listeria innocua # 6 327 7 330 331 313 45.0 4e-85 MSVQHVYEITVIGGGPVGMFAAFYAGLRQADVLLLESLDELGGQTGNLYPAKILYDIGGF PHVSGKDLVAQLKTQLMHFKPDVKTATEVQTIDEADDGTFVLHTSQGDFHTKTVIVATGG GAFTPRKLAVDYDPALEGQQLFYFVQDLETFRDQEVAIAGGGDSAIDWALALEPIARHVT LIHRRSKFRGLEASVAALEKSSVTIETPYLIEAVTHENKRLAVRLKEVRGEDQPTLTVDK LLVNYGFVTDKRHLQAWQFKTDRNGILVDSQMQTSRPGIFAIGDAVSYAGKLPLIASGFG EAPTAINEALSRLYPERRQALHSTQLYR >gi|225002451|gb|ACIZ01000128.1| GENE 16 13886 - 14470 610 194 aa, chain + ## HITS:1 COG:L113864 KEGG:ns NR:ns ## COG: L113864 COG0652 # Protein_GI_number: 15672875 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Lactococcus lactis # 1 192 1 193 196 228 60.0 6e-60 MDYPQLELAEFKGPKAIFETSEGHFEIALFPKQAPKTVDNFIGLAKKGYYDGLIFHRIIA DFMIQGGDPTGTGMGGESLWGKPFEDEFSNQLFNLKGALSMANAGPNTNGSQFFIVTNRH LDPSMKAQLSEAGFPEPIIKAYEQGGTPWLDHRHTVFGQVLSGLSVVEKIGQVKTGANDK PVEPVTIDRLTIQD >gi|225002451|gb|ACIZ01000128.1| GENE 17 14534 - 14917 246 127 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212640210|ref|YP_002316730.1| Predicted RNA binding protein (contains ribosomal protein S1 domain) [Anoxybacillus flavithermus WK1] # 1 116 54 157 167 99 45 1e-20 MEYRIGDILTGKVTGVQPYGAFVMLDEHTQGLVHISECQHGYVKDTSDIFNVGQRVEVVI LDIDEYTQKISLSLRALQAPPRLGKKRRRKHYWTSRKFHTGFAPIAAHLDGWVAEALEHL DGETTHK Prediction of potential genes in microbial genomes Time: Wed May 25 20:29:49 2011 Seq name: gi|225002450|gb|ACIZ01000129.1| Lactobacillus rhamnosus LMS2-1 contig00162, whole genome shotgun sequence Length of sequence - 875 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 6/0.000 + CDS 68 - 388 156 ## COG3293 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 358 - 855 222 ## COG3293 Transposase and inactivated derivatives Predicted protein(s) >gi|225002450|gb|ACIZ01000129.1| GENE 1 68 - 388 156 106 aa, chain + ## HITS:1 COG:alr7025 KEGG:ns NR:ns ## COG: alr7025 COG3293 # Protein_GI_number: 17233041 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 4 73 5 74 262 77 52.0 6e-15 MTDYPSNITRDQFELIRVDLETFRKRTCPRRVDLFDVFNAVLYELRTGAQWRQLPHDFPK WQTVYTYFAMWSKPLANSEYSLIDLLLKKLSLESDYEWDDRYERRS >gi|225002450|gb|ACIZ01000129.1| GENE 2 358 - 855 222 165 aa, chain + ## HITS:1 COG:MA2835 KEGG:ns NR:ns ## COG: MA2835 COG3293 # Protein_GI_number: 20091659 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Methanosarcina acetivorans str.C2A # 2 164 107 269 278 112 39.0 3e-25 MGRSVRTSFVILDAQSVKNTATPQNKGYDGGKKISGIKRHLAVDINGLPFAIHITTANVS ERDGAIALLALNEEQFDLVQRVMADGGYTGDNFAQSVHAIIGADVIIAKQSDLKNGQVTP QRWVVERSFSWLTNWRRLLFNCERKLNTSKVMVAMAFIGILLARQ Prediction of potential genes in microbial genomes Time: Wed May 25 20:29:50 2011 Seq name: gi|225002449|gb|ACIZ01000130.1| Lactobacillus rhamnosus LMS2-1 contig00163, whole genome shotgun sequence Length of sequence - 864 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 286 255 ## LGG_00437 cytosolic protein 2 1 Op 2 . - CDS 292 - 864 332 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs Predicted protein(s) >gi|225002449|gb|ACIZ01000130.1| GENE 1 2 - 286 255 94 aa, chain - ## HITS:1 COG:no KEGG:LGG_00437 NR:ns ## KEGG: LGG_00437 # Name: not_defined # Def: cytosolic protein # Organism: L.rhamnosus # Pathway: not_defined # 1 94 1 94 94 179 100.0 3e-44 MIDLRGKRILFTGRLRSFRRFQAQQLATILGAKPVNGIDKNVDILVVGIISKPYDQLLTT QKLTYARTYGIPKIDELAFISWCQWRLDQLKATL >gi|225002449|gb|ACIZ01000130.1| GENE 2 292 - 864 332 190 aa, chain - ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 175 26 196 199 88 35.0 9e-18 GVNKIFQEKLSGKNADRPQLKAMLDYIRDDDEVVVLSLDRLGRNSHDLTDIIETIRHRGA QLNVLNLPSFASIEDPNLRNLITTIIVELYKYIAQEERETIKIRQQQGIEIAKRQGKYKG KIREYGPHSPNRQKRYIYKEACRLLNRKKDGDETLTKRQIARMLGIAPVTLYRIEKYQAE DLANVPRSER Prediction of potential genes in microbial genomes Time: Wed May 25 20:29:52 2011 Seq name: gi|225002448|gb|ACIZ01000131.1| Lactobacillus rhamnosus LMS2-1 contig00164, whole genome shotgun sequence Length of sequence - 240 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 240 128 ## Predicted protein(s) >gi|225002448|gb|ACIZ01000131.1| GENE 1 3 - 240 128 79 aa, chain - ## HITS:0 COG:no KEGG:no NR:no GDSKAAAGFSSAASAAASSAKRAEAVASGAASAAASDDSVASSAASAAAGFDKAASAAEG AASSAASAAASSAAAQGTR Prediction of potential genes in microbial genomes Time: Wed May 25 20:29:58 2011 Seq name: gi|225002447|gb|ACIZ01000132.1| Lactobacillus rhamnosus LMS2-1 contig00165, whole genome shotgun sequence Length of sequence - 226 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 54 - 224 137 ## LSEI_1906 transposase Predicted protein(s) >gi|225002447|gb|ACIZ01000132.1| GENE 1 54 - 224 137 56 aa, chain - ## HITS:1 COG:no KEGG:LSEI_1906 NR:ns ## KEGG: LSEI_1906 # Name: not_defined # Def: transposase # Organism: L.casei # Pathway: not_defined # 1 56 28 83 83 92 100.0 4e-18 REYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLASLSEENEILKKALGFLAQK Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:00 2011 Seq name: gi|225002446|gb|ACIZ01000133.1| Lactobacillus rhamnosus LMS2-1 contig00166, whole genome shotgun sequence Length of sequence - 482 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 15 - 461 231 ## COG2826 Transposase and inactivated derivatives, IS30 family Predicted protein(s) >gi|225002446|gb|ACIZ01000133.1| GENE 1 15 - 461 231 148 aa, chain + ## HITS:1 COG:NMB0225 KEGG:ns NR:ns ## COG: NMB0225 COG2826 # Protein_GI_number: 15676151 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Neisseria meningitidis MC58 # 7 137 178 308 321 97 38.0 9e-21 MDTVRGGRGSKAAVLTIVDRVTRLMATTKLENLSQNAVLKGFARLMVDFPGPVRSVTVDH GKEFSCDQALTKRYRIPVYFCHAYHPNERGRNERFNRELRYYFPKGTQFDQVSEANIQRA TALINNKPRKCLRWQTPVQAVSKPLSRW Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:01 2011 Seq name: gi|225002445|gb|ACIZ01000134.1| Lactobacillus rhamnosus LMS2-1 contig00168, whole genome shotgun sequence Length of sequence - 235 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 39 - 111 81.7 # Ala TGC 0 0 - TRNA 143 - 219 92.7 # Ile GAT 0 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:02 2011 Seq name: gi|225002444|gb|ACIZ01000135.1| Lactobacillus rhamnosus LMS2-1 contig00169, whole genome shotgun sequence Length of sequence - 1833 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 785 - 811 1.0 1 1 Tu 1 . - CDS 849 - 1766 593 ## COG5527 Protein involved in initiation of plasmid replication Predicted protein(s) >gi|225002444|gb|ACIZ01000135.1| GENE 1 849 - 1766 593 305 aa, chain - ## HITS:1 COG:SAP027 KEGG:ns NR:ns ## COG: SAP027 COG5527 # Protein_GI_number: 16119227 # Func_class: L Replication, recombination and repair # Function: Protein involved in initiation of plasmid replication # Organism: Staphylococcus aureus N315 # 1 239 1 239 286 132 34.0 8e-31 MSNELVKYQPELNTIPLRKFSPVEMNLFFSIVSRMRDKGDQTVRFTFDQLKDLSNYKPTA NRRFIDDIKRTYDHLMDLRFGSQSKSGLSFERFVMFTKFKINGDADEPYVDVEVYRDAIP LLNNLESWVRYALTEFRDLKSSYAKTMFRLLKGYRTTGYAYFSKAEFNELLDVPKSYKPG DIDRAVLKPIREELTPLFKGLSIRKKYGKGRGKPVLGYSFAWKPERKDAEDVHVSKTERL NKARFNIEHNGELSDQEKWRAIDKIRGLKLGTTEAEHEQQAQQKREEQIRADERKKILDS LTKRR Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:02 2011 Seq name: gi|225002443|gb|ACIZ01000136.1| Lactobacillus rhamnosus LMS2-1 contig00170, whole genome shotgun sequence Length of sequence - 366 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 1 - 73 85.2 # Lys TTT 0 0 - TRNA 76 - 148 89.5 # Val TAC 0 0 - 5S_RRNA 156 - 273 100.0 # EU184020 [D:4881..4998] # 5S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Predicted protein(s) Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:03 2011 Seq name: gi|225002442|gb|ACIZ01000137.1| Lactobacillus rhamnosus LMS2-1 contig00171, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:03 2011 Seq name: gi|225002441|gb|ACIZ01000138.1| Lactobacillus rhamnosus LMS2-1 contig00172, whole genome shotgun sequence Length of sequence - 582 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 38 - 487 437 ## COG0662 Mannose-6-phosphate isomerase Predicted protein(s) >gi|225002441|gb|ACIZ01000138.1| GENE 1 38 - 487 437 149 aa, chain + ## HITS:1 COG:BS_yrkC KEGG:ns NR:ns ## COG: BS_yrkC COG0662 # Protein_GI_number: 16079709 # Func_class: G Carbohydrate transport and metabolism # Function: Mannose-6-phosphate isomerase # Organism: Bacillus subtilis # 8 141 53 185 186 137 50.0 5e-33 MLEKSADLGDYGPAPFAPDLKSAALENENYRTTLWTGDHFQITLMAIPAGGGDIGMEIHH GNDQLIYLVAGIGHVKMGKDKDHLTVDQEIHPGEAVVVPDNTWHNVINAGKQTMKVFSIY SPVKHQKGTNEATKADAIKQEGPLEGTGE Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:04 2011 Seq name: gi|225002440|gb|ACIZ01000139.1| Lactobacillus rhamnosus LMS2-1 contig00174, whole genome shotgun sequence Length of sequence - 3721 bp Number of predicted genes - 4, with homology - 3 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 177 67 ## + Term 413 - 475 -0.8 2 2 Op 1 . - CDS 199 - 585 333 ## gi|203284799|ref|YP_002221643.1| hypothetical protein LRH_03901 3 2 Op 2 . - CDS 578 - 1459 544 ## COG1192 ATPases involved in chromosome partitioning - Prom 1594 - 1653 6.2 + Prom 1886 - 1945 4.5 4 3 Tu 1 . + CDS 2173 - 3648 1171 ## EFA0058 RepE protein Predicted protein(s) >gi|225002440|gb|ACIZ01000139.1| GENE 1 1 - 177 67 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLRLLILNFSALEYFSAHDVALVKGHFMISTSREAKRFTYLHMCNFIIANIAGNLDYV >gi|225002440|gb|ACIZ01000139.1| GENE 2 199 - 585 333 128 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|203284799|ref|YP_002221643.1| ## NR: gi|203284799|ref|YP_002221643.1| hypothetical protein LRH_03901 [Lactobacillus rhamnosus HN001] # 1 128 1 128 128 187 100.0 1e-46 MADTKKNTIGFFNKEKKHSPDMAYKEDIPVKETYKGSGLKAFDPSAEKKTTPVTHKVKDA RRTIRIPRQQYYELLALLELSPNKYVYELIAELVDRAVKEISTDRPDELRLYQQAIERIK ATDERRSR >gi|225002440|gb|ACIZ01000139.1| GENE 3 578 - 1459 544 293 aa, chain - ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 13 293 22 289 293 173 35.0 4e-43 MQSKLNLKRPLTITVANAKGGVGKTTITRYLPYDLAERGYKVLVIDADPQANLTKSMGIT KQQHDPDNIFTIDKSMMAAVRDGSFKGAVLEIVPNLYELPSQIDFRGFETFLSKKYGVAE KGDPEYLSVESKKVSLLKGLIEPIKADYDFVFIDTPPTAGQYVRNATFASDYVIIAFQTQ SDSLDGAIQFISDDLTELVETFGARTDVLGILPNQVSKSGAIDQVVIKDAIARFGQQNLF DHIIPFARRIQAAPRMGLSRQGYWNQKLFDDIVDPLTDDFLKRLKIVGEVTNG >gi|225002440|gb|ACIZ01000139.1| GENE 4 2173 - 3648 1171 491 aa, chain + ## HITS:1 COG:no KEGG:EFA0058 NR:ns ## KEGG: EFA0058 # Name: repE # Def: RepE protein # Organism: E.faecalis # Pathway: not_defined # 14 443 7 441 496 276 36.0 2e-72 MDVLGAANLSEAAIVAILHHGLARSKYKHSQLRPEDRQGTRPTGAIFLTRTKDDLREAIG FVATSQEAVLDNETCSHWTPNIFRFGTYADRRCHVLKGHSEDNLKQINTFVVDADFGSGK PSYDTALLNKFIVNQNDQQEFWPTLVLETPHGYQAYYVLDRPVFVRRTGDQLPAVTAAKR VSEALRAAVAKDLPQVDVGANHFGFFRKPSEENVCFFEPALTHDFGDLQDWTKLQHLTFH HDNKAHYPVKQTDQPWFIALTHAQVPRGDGMLGRNNTLLTLCLAGYSSGWSAEEAYDFAD QWNTDQREPLSDQEVRRIIRSAFSGKYQGASAAYIAELTATYTPDAPKTTGPQVWHKYAK PRTERKYSHLQEWAGDLVAYVVERAGQAVDQIKVTTRELRDQLGISSQVLTKVLAYVADY GLLKVVKQYGRHGGLYLTTRQMLGRQLQLDRRAQAISWHDFVTGQLRGRAQKEVVNGQVS LLPETLTRSGP Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:23 2011 Seq name: gi|225002439|gb|ACIZ01000140.1| Lactobacillus rhamnosus LMS2-1 contig00175, whole genome shotgun sequence Length of sequence - 11524 bp Number of predicted genes - 14, with homology - 13 Number of transcription units - 11, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 70 - 129 3.2 1 1 Op 1 . + CDS 237 - 428 146 ## gi|203284777|ref|YP_002221621.1| Integral membrane protein + Prom 437 - 496 2.3 2 1 Op 2 . + CDS 528 - 899 283 ## COG3759 Predicted membrane protein 3 2 Tu 1 . - CDS 970 - 1500 164 ## COG3464 Transposase and inactivated derivatives - Prom 1528 - 1587 3.6 + Prom 1545 - 1604 3.4 4 3 Tu 1 . + CDS 1627 - 1824 215 ## OEOE_1202 exopolysaccharide biosynthesis protein + Prom 2513 - 2572 3.9 5 4 Tu 1 . + CDS 2700 - 3818 764 ## LSL_2000 plasmid replication initiation protein + Prom 3826 - 3885 6.0 6 5 Op 1 . + CDS 4079 - 4360 400 ## pWCFS103_01 DNA-damage-inducible gene 7 5 Op 2 . + CDS 4350 - 4856 185 ## pWCFS103_41 hypothetical protein + Term 4924 - 4956 -0.9 - Term 4619 - 4670 6.4 8 6 Op 1 . - CDS 4846 - 5124 278 ## LVIS_B18 hypothetical protein 9 6 Op 2 . - CDS 5147 - 5356 294 ## LSL_2004 hypothetical protein - Prom 5416 - 5475 6.7 + Prom 5409 - 5468 4.9 10 7 Tu 1 . + CDS 5630 - 7690 1292 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member - Term 7954 - 7990 5.1 11 8 Tu 1 . - CDS 8081 - 8170 82 ## - Prom 8262 - 8321 8.3 + Prom 8544 - 8603 5.6 12 9 Tu 1 . + CDS 8637 - 9986 448 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 - Term 10386 - 10431 11.3 13 10 Tu 1 . - CDS 10526 - 10942 325 ## GALLO_2032 putative collagen binding protein, peptidoglycan linked protein (LPXTG motif) - Prom 11036 - 11095 5.5 + Prom 11037 - 11096 4.7 14 11 Tu 1 . + CDS 11210 - 11509 191 ## COG3293 Transposase and inactivated derivatives Predicted protein(s) >gi|225002439|gb|ACIZ01000140.1| GENE 1 237 - 428 146 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|203284777|ref|YP_002221621.1| ## NR: gi|203284777|ref|YP_002221621.1| Integral membrane protein [Lactobacillus rhamnosus HN001] # 1 63 1 63 63 98 100.0 1e-19 MPGEGLARAVSIGVKIPFPTAKIWGDSSMVMVPVLLALAVFHSLTGIREGTIIAVFLVGH IVL >gi|225002439|gb|ACIZ01000140.1| GENE 2 528 - 899 283 123 aa, chain + ## HITS:1 COG:AGl3168 KEGG:ns NR:ns ## COG: AGl3168 COG3759 # Protein_GI_number: 15891701 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 119 21 133 137 72 43.0 1e-13 MIILKDIFVIFVAVEALLIMLLEMFGTQTKIARNAFDLSKKYLAIKEARMSMANQGLYNG FVGVGIVYARYGLTGMASLHVQVLFIGFVVIAALFGSVTANKKIIFTQGGPALFALGFLL FVN >gi|225002439|gb|ACIZ01000140.1| GENE 3 970 - 1500 164 176 aa, chain - ## HITS:1 COG:FN0275 KEGG:ns NR:ns ## COG: FN0275 COG3464 # Protein_GI_number: 19703620 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 175 105 284 317 84 30.0 9e-17 MVSTNHAIGHGLATHVLKLASKSLPAKTIASLTGISTNSVQRILTANIHPHASRRLPINL CFDEFRSTHGSMSFICIDADTHKSVKALSDRLNRTIKQFFLSQYSTAERAAVQRVIMDMN ASYQAFVHKLFPNAELIIDQFHIIQLMGRTIEEFEMLQNLPPEELLARRQARFRKF >gi|225002439|gb|ACIZ01000140.1| GENE 4 1627 - 1824 215 65 aa, chain + ## HITS:1 COG:no KEGG:OEOE_1202 NR:ns ## KEGG: OEOE_1202 # Name: not_defined # Def: exopolysaccharide biosynthesis protein # Organism: O.oeni # Pathway: not_defined # 2 61 274 333 339 104 76.0 1e-21 MGNSYGKGKHAYFDWLEHINWVSYTDEEDTERIKQQINAVMEAKTHAYDLIPDFKQLHDL IAHNR >gi|225002439|gb|ACIZ01000140.1| GENE 5 2700 - 3818 764 372 aa, chain + ## HITS:1 COG:no KEGG:LSL_2000 NR:ns ## KEGG: LSL_2000 # Name: repA # Def: plasmid replication initiation protein # Organism: L.salivarius # Pathway: not_defined # 1 362 1 363 364 541 78.0 1e-152 MTKSTNFNYYEADNVYGALFFQFPKVLMYGEQYKHLSNDAKLAYMVLKDRLEYSLRNNWV DSEGHVYFIFTNQELMDLFNCSKGKVIKIKTELESIGLLVQKQMGFNPKTKKNEPNRLYL SKLDVKATDVYLRGEYSQNSPQTLATSGSSKNELPRETVETLTTSGSSKNELPHKFVGNS PQTLATSGSSKNGLNLYKEPKEKDKHRYNIDTQKLDFSTANFSPAEIQKQNQDLVNHANE FLTDEDSGLPVFLEPEAVQLLSFWCRTPQQMRRFIGIILNAKYRVEKDHKDIGVIIPLDD EELRPLMTKALRRYFNALRSNEKHIKNVENYLYGTMQNLFDVWWNKQAAREYAAKHPEEE KSANNDNSGLYY >gi|225002439|gb|ACIZ01000140.1| GENE 6 4079 - 4360 400 93 aa, chain + ## HITS:1 COG:no KEGG:pWCFS103_01 NR:ns ## KEGG: pWCFS103_01 # Name: orf1 # Def: DNA-damage-inducible gene # Organism: L.plantarum # Pathway: not_defined # 1 93 1 93 93 157 96.0 1e-37 MAVKEKKRVQVKIDKDLADDTEAILSELGLNPTTAINMFYKRIVANGALPFNASLSEEER ANLRFLKVTEGTPVTEFKDAKEVADWLNDPDED >gi|225002439|gb|ACIZ01000140.1| GENE 7 4350 - 4856 185 168 aa, chain + ## HITS:1 COG:no KEGG:pWCFS103_41 NR:ns ## KEGG: pWCFS103_41 # Name: orf41 # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 65 168 1 104 104 162 96.0 6e-39 MRTNDLVSLYVSFVETNGGKSRPVLTRRVSEQTVEAFKITSQYEKKSAYIKQQYYPIQDW QSAGLKKPSWVDLGNIYRFPKAGLNFKEIGHLSKLDQNKISDFTLDLKSKRRGKGQKIIQ HRSSKRKHKESKADLTQRIQKQLKDFAKHNPEIKPKNNPENKNDRPSY >gi|225002439|gb|ACIZ01000140.1| GENE 8 4846 - 5124 278 92 aa, chain - ## HITS:1 COG:no KEGG:LVIS_B18 NR:ns ## KEGG: LVIS_B18 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 1 92 1 92 92 110 95.0 2e-23 MSNQYEKLVEQQARLKKKIEREDFKLRQSKYYENRQARKARSRRLIQKGALLEKYFQANN LSVEQTEELLKTFADYVNAHKPDKLKNDQPNN >gi|225002439|gb|ACIZ01000140.1| GENE 9 5147 - 5356 294 69 aa, chain - ## HITS:1 COG:no KEGG:LSL_2004 NR:ns ## KEGG: LSL_2004 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 69 1 69 69 69 89.0 3e-11 MPQSNLEKQEAKLKQLNQKIKAEKNKIEQQLGKQIISQANLDYANLSNDQIKLLAKQFSE FLKVKFLDH >gi|225002439|gb|ACIZ01000140.1| GENE 10 5630 - 7690 1292 686 aa, chain + ## HITS:1 COG:AGpT237 KEGG:ns NR:ns ## COG: AGpT237 COG0507 # Protein_GI_number: 16119945 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 247 18 267 1117 125 32.0 4e-28 MVIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSVMPESFILTPKNAPE WASDREQLWNEVEKKDRKSNSRYAKEFNVALPVELSESEQKALLTKYVQENFVDEGMVAD VAIHRDHPDNPHAHVMLTNRPFNPDGTWGQKTKTEYILDSNGNKTKTPAGNVRNRKIWLV DWDKKEKITEWRHNWSASVNQALEQKNIPDRISEKSFVEQGIADTPMQHEGINSKRHERK AFNQQVKNYRKAKASYKNNQEKVINRGHLDILSKHFSFNEKKVVKELSHELKTYISLENL DDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVVDRTTKKLYPEL NFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGWKLLM QQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVI QTQYQEVLRRAFPNGNFNGLPMIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSP QEHQQGLAYLSGQLSLDQLENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQMQLK EQQAKDDQDRKANIGHYQPLNYKPVSPDYYLKTVFSNAIMTALYAHDEDYERQKQARGLK ETEWEMTKKQRQHQTRNQHEDGGMHL >gi|225002439|gb|ACIZ01000140.1| GENE 11 8081 - 8170 82 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSVFQTLSLMLLFGTFLIALLSYIDKHHK >gi|225002439|gb|ACIZ01000140.1| GENE 12 8637 - 9986 448 449 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 438 1 444 458 177 28 4e-44 MDKFKNIIIGFGKAGKTLAKYLAQHDETVLLIERSKQMYGGTCINVGCLPSKNLILNGQR GLDFTTAVNKRGEMTRQLRDKNYHMVADEPLATIWDGSARFIDNYVLAVVMSDGTTKKVR GERIFINTGAVPNWPSIPGLEFGQRIFTSKEAMELEKQPKRLAIIGGGYIGLEFAGMFNS FGTHVTIFDQHTRLLEREDPDIATEVVADLTDAGIEIKPETQLTQVKDNGEKVTLYYQQG DQSNTTEFDAVLVAVGRRPNINSLGLENTDIALTSRGAIQVDDHLRTTVQNVWALGDVNG GPMFTYVSLDDFRIIVDQLFDKGDRSTADRMVIPTASFLNPPLANVGLNERQAKSAGYDL QTFKLSVKAIPKARVLEDQRGLYKVIVDQKTHLILGATLYAAEAHETINLIALAMKAKLP YERLRDMIYTHPTMSEALNDLFKTPVVKS >gi|225002439|gb|ACIZ01000140.1| GENE 13 10526 - 10942 325 138 aa, chain - ## HITS:1 COG:no KEGG:GALLO_2032 NR:ns ## KEGG: GALLO_2032 # Name: not_defined # Def: putative collagen binding protein, peptidoglycan linked protein (LPXTG motif) # Organism: S.gallolyticus # Pathway: not_defined # 1 61 425 485 775 78 62.0 9e-14 MANGQQVASKKVTASDNWQYSFDNLAAYANGQKITYTVTEDAVAGYTSTVDGYNITNTHN PTTPKKPQVPNNPTTPKEPQVPNNGNKVTPKDFTQGKMYDKTSRLPQTGDGSSMGMMLIG LVTLLLSLGLVVISRFTI >gi|225002439|gb|ACIZ01000140.1| GENE 14 11210 - 11509 191 99 aa, chain + ## HITS:1 COG:alr7025 KEGG:ns NR:ns ## COG: alr7025 COG3293 # Protein_GI_number: 17233041 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 5 80 2 77 262 64 35.0 5e-11 MQHFSHHYQSDISRQQLDLIRQDLEASRKRTHPKHIDPYDIFCAMLYVLKNGCTWRDLPA DYPKWSTVYYYWMSWSKAPTPDKPALLTQVLKKLSLIDD Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:50 2011 Seq name: gi|225002438|gb|ACIZ01000141.1| Lactobacillus rhamnosus LMS2-1 contig00176, whole genome shotgun sequence Length of sequence - 2416 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 364 263 ## LSEI_0342 transposase 2 1 Op 2 . + CDS 428 - 676 214 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family + Term 746 - 795 4.1 + Prom 749 - 808 7.3 3 2 Tu 1 . + CDS 833 - 1741 813 ## COG0598 Mg2+ and Co2+ transporters + Term 1783 - 1819 -1.0 - Term 1855 - 1916 18.8 4 3 Tu 1 . - CDS 2032 - 2328 137 ## COG3293 Transposase and inactivated derivatives Predicted protein(s) >gi|225002438|gb|ACIZ01000141.1| GENE 1 2 - 364 263 120 aa, chain + ## HITS:1 COG:no KEGG:LSEI_0342 NR:ns ## KEGG: LSEI_0342 # Name: not_defined # Def: transposase # Organism: L.casei # Pathway: not_defined # 48 120 1 73 73 125 98.0 6e-28 GKKISGIKRHLAVDINGFPQAIHITRANITDRDGAIALVTLNLEQFKLVRTMMVDSGYTG QNFANEISSLTSAKVIVVKEMSYTNFRLSPNGGSLNVHLVGWEIIIVYGVTVSVSSTLVS >gi|225002438|gb|ACIZ01000141.1| GENE 2 428 - 676 214 82 aa, chain + ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 5 77 372 444 450 79 61.0 1e-15 MIFAIYYHGNEAKIEGLLTASQVFLSIALPFAIIPLVMFTSNKKLMGEFANHTWVKYAAW FATIVLVTLNIYLILQTVGLLK >gi|225002438|gb|ACIZ01000141.1| GENE 3 833 - 1741 813 302 aa, chain + ## HITS:1 COG:lin0568 KEGG:ns NR:ns ## COG: lin0568 COG0598 # Protein_GI_number: 16799643 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 6 297 4 297 301 122 31.0 6e-28 MIKPEKTINGTKWIETIQINAEERATLEDQYGIDEDIIEYVTDNDESTNYVYDINEDDQL FIFLAPYALDKDALRYITQPFGMLLHNGVLFTFNQSHIPEVNTALYSALDNPEVKSVDAF ILETLFTVVDSFIPISRVITKKRNYLDKMLNRKTKNSDLVSLSYLQQTLTFLSSAVQTNL SELDRLPKTHFGVGADQDKIDLFEDVQIEGEQVQRMFEIETQVVDRIDHTFNSLANNNLN DTMKFLTIWSLTMAVPTIITGFYGMNVKLPLAGMQYAWMLTLGISVALIVAMLIMLKVWR KM >gi|225002438|gb|ACIZ01000141.1| GENE 4 2032 - 2328 137 98 aa, chain - ## HITS:1 COG:msr8681 KEGG:ns NR:ns ## COG: msr8681 COG3293 # Protein_GI_number: 13474982 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mesorhizobium loti # 10 97 92 180 187 69 37.0 1e-12 MIALHAMHLRQVQNVLVDGGYSGVNFQLDVASNLNATVQVAKRNELHRFEVMPQRWVVER SFSWLENCRRLWKNCERQLTTSLQIVVLAFLALLLKRF Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:52 2011 Seq name: gi|225002437|gb|ACIZ01000142.1| Lactobacillus rhamnosus LMS2-1 contig00177, whole genome shotgun sequence Length of sequence - 1018 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 112 - 864 310 ## COG0675 Transposase and inactivated derivatives Predicted protein(s) >gi|225002437|gb|ACIZ01000142.1| GENE 1 112 - 864 310 250 aa, chain + ## HITS:1 COG:DR1593 KEGG:ns NR:ns ## COG: DR1593 COG0675 # Protein_GI_number: 15806601 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 8 240 151 368 408 98 29.0 1e-20 MAEQPRWQGEIKQVCIVQDADGYYASLSIEATVMVEKRTIRRVTAVDVNVGKFDYKTPSG YAIQPTLPASLPALYARITHYQKQLARKRTTNPKHFNSATYRATRTKLKRNYQRVERIQM DLLNKFTTKLVVDHDLIGIEDLDNQHMRMNHRLAKKLHRSMFGKFKIMMQYKADWNGSTL ILADPMFPSTQRCSKCGYIKTGEEKLTLHGNAKYHTGHDDYICYQCGARMRRDENAVDNL IDYAKSKVPG Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:53 2011 Seq name: gi|225002436|gb|ACIZ01000143.1| Lactobacillus rhamnosus LMS2-1 contig00178, whole genome shotgun sequence Length of sequence - 459 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 458 168 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|225002436|gb|ACIZ01000143.1| GENE 1 3 - 458 168 152 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 143 104 244 317 69 33 4e-13 WSPGMIAHEFKLATKSIYNWLNQGRIGFSLNDLPEHGVRQRRNVDQRSKYNQSLGRSIEQ RPMIINQRNRIGDFELDTVVGPRGHSKAVLLTLIDRKSRFLWAYRLKDRTTATVNEALTK FLTTFNGPVHSFTVDRGTEFSGLVSLESQYGI Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:54 2011 Seq name: gi|225002435|gb|ACIZ01000144.1| Lactobacillus rhamnosus LMS2-1 contig00179, whole genome shotgun sequence Length of sequence - 938 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 927 280 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|225002435|gb|ACIZ01000144.1| GENE 1 1 - 927 280 308 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 292 3 282 317 112 32 1e-25 HKHYQQLSFSDRATIQALQAAGDTATVIAQKLHRSKATISREITRGSVTQLDSKRHSHQV YLAETAQAMHDRKRDRTGHYAFLKTGRAFFKALSRELTRKPRVHSFDSFVHFYRDQGKAC PSTTTVYRYIDAGLLDLDNMTLPKKLRRRIKGYKNAHKRKNKKIYGDSIELRPAAVNDRT GVGHWEGDLVKGIRLADEPALMTLTERYSRTEIIVKIPDYHADTCLKALQDTIDDYGAKE FESITFDNGSEFAKLSEIVGTQIYFAHPYSPWERGTNENANGLLREFFPKGSLSEQLPWL KFKQSNPH Prediction of potential genes in microbial genomes Time: Wed May 25 20:30:54 2011 Seq name: gi|225002434|gb|ACIZ01000145.1| Lactobacillus rhamnosus LMS2-1 contig00181, whole genome shotgun sequence Length of sequence - 304 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 303 326 ## Predicted protein(s) >gi|225002434|gb|ACIZ01000145.1| GENE 1 3 - 303 326 100 aa, chain + ## HITS:0 COG:no KEGG:no NR:no SASDAAGQSGSAAQHASTAASAASSYPKDSGIQSLASQAASEAAKASSNASAATSAAAVG SSAASDASEQAKTAASADVVASSAASTANSNASAAASATK Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:01 2011 Seq name: gi|225002433|gb|ACIZ01000146.1| Lactobacillus rhamnosus LMS2-1 contig00182, whole genome shotgun sequence Length of sequence - 1229 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 53 - 499 514 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 632 - 691 6.6 + Prom 559 - 618 6.9 2 2 Tu 1 . + CDS 804 - 1193 358 ## LGG_02218 XRE family transcriptional regulator Predicted protein(s) >gi|225002433|gb|ACIZ01000146.1| GENE 1 53 - 499 514 148 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 146 1 144 152 125 47.0 3e-29 MDQEYDRLLVPVDGSKEAELAFNKAVKVALANQAHLDVLNVLDTKQFIGSYGGMISGDAV YQLTQDAQEYLENLKDQAKQTGLTDVDIHIRFGNPKTVIATDFPHDHHNDLIVIGATGLN AVERVLVGSVTEYVNRTAPCDVLIVKTK >gi|225002433|gb|ACIZ01000146.1| GENE 2 804 - 1193 358 129 aa, chain + ## HITS:1 COG:no KEGG:LGG_02218 NR:ns ## KEGG: LGG_02218 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.rhamnosus # Pathway: not_defined # 1 129 1 129 129 231 100.0 5e-60 MITNGVGSVLRQIRKSRGESIVEVAKATHTSPASFTKWENDQTIPSERSIRKLAEYYQTD PLELLGVAYPDKYAKQQEQEKAAAEGSTIRIEDLIGNNSVLTYNGSPLSSGTKSLVAAFI AGLIISQPE Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:04 2011 Seq name: gi|225002432|gb|ACIZ01000147.1| Lactobacillus rhamnosus LMS2-1 contig00183, whole genome shotgun sequence Length of sequence - 702 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 484 242 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|225002432|gb|ACIZ01000147.1| GENE 1 1 - 484 242 161 aa, chain - ## HITS:1 COG:STM0325 KEGG:ns NR:ns ## COG: STM0325 COG2801 # Protein_GI_number: 16763706 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 13 156 100 242 266 124 43.0 1e-28 MKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRNGWCY LSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQ RLTELHIRHSYSCKGCPYDNAPMESFHASLKKECVYPVPVF Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:08 2011 Seq name: gi|225002431|gb|ACIZ01000148.1| Lactobacillus rhamnosus LMS2-1 contig00184, whole genome shotgun sequence Length of sequence - 1776 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 140 - 1706 99.0 # EU184020 [D:65..1631] # 16S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:10 2011 Seq name: gi|225002430|gb|ACIZ01000149.1| Lactobacillus rhamnosus LMS2-1 contig00185, whole genome shotgun sequence Length of sequence - 3051 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 406 - 2854 99.0 # EF030190 [D:1..2449] # 23S ribosomal RNA # Lactobacillus rhamnosus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:10 2011 Seq name: gi|225002429|gb|ACIZ01000150.1| Lactobacillus rhamnosus LMS2-1 contig00187, whole genome shotgun sequence Length of sequence - 938 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 13 - 918 256 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|225002429|gb|ACIZ01000150.1| GENE 1 13 - 918 256 301 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 290 19 310 317 103 28 7e-23 LIERSQIELMQHHTIQYIAATLGRSRISIRHELHRCPEGDYCAIIAQDHADTCRHRCGRH SILTPKLKRMVTEKLNLGWSPEMVGYAVHCAPHTIYHWIYQRQVGFQPSQLFDHGKCHKR RQDLRSRYNQAVGTSIEIRSESANRRTEKGHLEMDTVRGGRGSKAAVLTIVDRVTRLMAT TKLENLSQNAVLKGFARLMVDFPGPVRSVTVDHGKEFSCDQALTKRYRIPVYFCHAYRPN ERGTNERFNRELRYYFPKGTQFDQVSETDIQQATALINNKPRKCLRWQTPVQAVSKPLSR W Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:11 2011 Seq name: gi|225002428|gb|ACIZ01000151.1| Lactobacillus rhamnosus LMS2-1 contig00188, whole genome shotgun sequence Length of sequence - 1151 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1150 1003 ## LC705_02890 adhesion exoprotein Predicted protein(s) >gi|225002428|gb|ACIZ01000151.1| GENE 1 1 - 1150 1003 383 aa, chain - ## HITS:1 COG:no KEGG:LC705_02890 NR:ns ## KEGG: LC705_02890 # Name: not_defined # Def: adhesion exoprotein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 383 1322 1704 2299 540 100.0 1e-152 TGNNYQLTADDLAKVTGTITITPAAVTADSNDVSFEYDGKTKASEAKDIQATIALDETEK TVDLTSADIIVANDDVNAGQYSYQLSDAGKTKLRAATGNNYQLTADDLAKVVGTITITPA ITTVDSNDVSFEYDGKTKASEAKGIQATVKLGESEKTVDLTSADIIVANDGVTVGKYTYS LSSSGKAKLQTATGNNYQLTADDLAKVTGTVTITPAIATANSNDVSFEYDGKTKASEAKG IQAVVKPGESEKTVDLTSADIIVANDGATVGKYTYSLSDSGKAKLIAATGNNYQLTADDL AKVTGTITITPAVTTADSNDVSFEYDGKTKASEAKGIQATVTLGETKKTVELMSADIVVE NDDVDAGKYSYQLSDAGKAKLIA Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:16 2011 Seq name: gi|225002427|gb|ACIZ01000152.1| Lactobacillus rhamnosus LMS2-1 contig00189, whole genome shotgun sequence Length of sequence - 1272 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 16 - 372 432 ## COG5294 Uncharacterized protein conserved in bacteria - Prom 398 - 457 2.6 2 2 Tu 1 . - CDS 504 - 1229 554 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) Predicted protein(s) >gi|225002427|gb|ACIZ01000152.1| GENE 1 16 - 372 432 118 aa, chain - ## HITS:1 COG:L193090 KEGG:ns NR:ns ## COG: L193090 COG5294 # Protein_GI_number: 15673733 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 117 1 115 119 94 47.0 5e-20 MKKVLIGLVVLIVLVFGGLKIFEITNYGGTTYYTKITNTGQRVTDRDDEGNKYIIYAYDL PGYDEKGGLQQLKFNANQDRPLRKNAYLKVTYNDKKGVTSWESVPRSEVPKAALSKLE >gi|225002427|gb|ACIZ01000152.1| GENE 2 504 - 1229 554 241 aa, chain - ## HITS:1 COG:mlr7748 KEGG:ns NR:ns ## COG: mlr7748 COG3757 # Protein_GI_number: 13476430 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Mesorhizobium loti # 43 231 13 204 228 72 25.0 6e-13 MRRRRVIYANTYQHRRRLWFLLISAGVVAALVIGWWLLRNPRPDPTAYPVLGVRLDQTDG VQDFDRLRSSRVSFVYLKATEGSSYFDDNFNTNFTQAAGSRVSIGVYHVFSFETTPQAQA TQFIRKVGSNIGDLPIGIYLSYYREQKPSSSWLTQHLTEFITFIQQRYHRQVLLMGSPDI LKVVKTVVPQAPRWTITDKRPANNGGFWQYTDGARLPDGPQASYRAAVFMGKRGTFLKLA Q Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:17 2011 Seq name: gi|225002426|gb|ACIZ01000153.1| Lactobacillus rhamnosus LMS2-1 contig00190, whole genome shotgun sequence Length of sequence - 205 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 204 187 ## Predicted protein(s) >gi|225002426|gb|ACIZ01000153.1| GENE 1 3 - 204 187 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no DAKAKGEAASSYATAADQSAKQASSSADQAGSAATKYPEDPAIKSAADLAKSAADDAAKS AAAAKDV Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:22 2011 Seq name: gi|225002425|gb|ACIZ01000154.1| Lactobacillus rhamnosus LMS2-1 contig00191, whole genome shotgun sequence Length of sequence - 729 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 659 218 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|225002425|gb|ACIZ01000154.1| GENE 1 2 - 659 218 219 aa, chain - ## HITS:1 COG:pli0024 KEGG:ns NR:ns ## COG: pli0024 COG3316 # Protein_GI_number: 18450307 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 218 1 215 226 227 53.0 1e-59 MNHFKGRHFQKDIILVAVGYYFRFSLSYRDIVELLRDRGITVHHTTVMRWVHHYGPIFKA LWRRHQTAHAKSWRIDETYIRVKGRWAYLYRAIDSNGLTMDFELRKHRDYTASYHFLKRL LTTNGRPDRLVTDQYRATLKAVKHLIKQDYLSKSAHQCSKYRNNLIEQDHRFIKRHRVRS ASFQSIRTASATLSGVEIVHAIRKRTRRELSLIGFSVVD Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:22 2011 Seq name: gi|225002424|gb|ACIZ01000155.1| Lactobacillus rhamnosus LMS2-1 contig00192, whole genome shotgun sequence Length of sequence - 738 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 86 - 484 308 ## COG0732 Restriction endonuclease S subunits Predicted protein(s) >gi|225002424|gb|ACIZ01000155.1| GENE 1 86 - 484 308 132 aa, chain + ## HITS:1 COG:L0310 KEGG:ns NR:ns ## COG: L0310 COG0732 # Protein_GI_number: 15672634 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Lactococcus lactis # 11 130 174 293 407 177 74.0 3e-45 MKQSVLVPNLDEQQKIGTFFKQLDHLITLHQRKLDLLKELKKGLLQKLFPANGQDRPEIR FKGFADAWEKRKLGELAEFINGRAYKQDELLTSGKYPVLRVGNFYTNDKWYYSDLELPEK YYAKKGDLLYMD Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:24 2011 Seq name: gi|225002423|gb|ACIZ01000156.1| Lactobacillus rhamnosus LMS2-1 contig00193, whole genome shotgun sequence Length of sequence - 5699 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 17 - 340 253 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 491 - 550 6.7 + Prom 506 - 565 8.9 2 2 Op 1 1/0.000 + CDS 683 - 1561 605 ## COG3711 Transcriptional antiterminator 3 2 Op 2 8/0.000 + CDS 1694 - 3427 1255 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 4 2 Op 3 2/0.000 + CDS 3454 - 4878 1058 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 5 2 Op 4 . + CDS 4927 - 5262 455 ## COG1447 Phosphotransferase system cellobiose-specific component IIA + Term 5377 - 5418 5.2 Predicted protein(s) >gi|225002423|gb|ACIZ01000156.1| GENE 1 17 - 340 253 107 aa, chain - ## HITS:1 COG:all1768 KEGG:ns NR:ns ## COG: all1768 COG0463 # Protein_GI_number: 17229260 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 10 102 1 99 322 63 34.0 6e-11 MIKTSFKEAITSNLDLTIVVPTYNLGHYLPETLKSIQQQTIDFELWLIDDASTDGTAQTV ADFVKGIPNFHATGFNDHRGIGAARNFGIDHTTGQAVAFVENLSSIF >gi|225002423|gb|ACIZ01000156.1| GENE 2 683 - 1561 605 292 aa, chain + ## HITS:1 COG:SP1187 KEGG:ns NR:ns ## COG: SP1187 COG3711 # Protein_GI_number: 15901052 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pneumoniae TIGR4 # 1 279 1 278 278 202 38.0 9e-52 MPKIAQIFNNNVVLVDLDNRGQAVVKGRGIAFQKRRGDVIPTKQIEKIFYLANETSRQNL YFLLKNIPIDVVMTTYEIIDVAQKQYRLKVLDYIYITLSDHIYEAYKRYQAGTYQETMVP DFHIQYPAEYAVAKQALQIIATNLGVQFPQSEIKNLALHFINAFGKDDGEQVFGKSNEAS LSQLVQEVLKRHQITRSHSNGNYYDRFMIHLQYLIDRLQRVDTYAVTIVPEVATELKQNY PQSYKIASEIFDEIKDQLYRSMSEDERLYFIIHIQRLINEAPAQNHSQNDSL >gi|225002423|gb|ACIZ01000156.1| GENE 3 1694 - 3427 1255 577 aa, chain + ## HITS:1 COG:CAC2964 KEGG:ns NR:ns ## COG: CAC2964 COG1455 # Protein_GI_number: 15896217 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Clostridium acetobutylicum # 4 572 7 553 560 554 49.0 1e-157 MNKVFDKLKPVFEAIAANKYISAIRDGFIACMPIIIFSSIFMMVAYVPNAWGFYWPDNVT NTLMVAYNYSMGLLALFVAGTTAKNLTDSKNLELPKTNQINPVAVIVASEISFVILSILP LKTGVDLTYMGTQGLICAYIVGLIVPNIYYVCIKNNVTIKLPAQVPGNIAQSFKDLIPMG LSVTAFWLFGVGFKAATGTVLPRWIIQVLSPLFQASDSYLGLALIAGAMAFFWFCGVQGP SIVQPAVVPIMIANTAANLQQYQAGQHVSHVLAMNTMDYVMNFGGTGATLVVPFIMLFAA RSAQLKAVGKVSFVPCTFGVNEPVLFGMPIIMNPIFFIPFLATPIVNVCLFKFFVSVLGM NSMMYTMPWTVPGPIGILISTGFAPLAFAFVLLTLVLDVAIYFPFIRVYDSTLLAEEKAK EEVIEDDGMAVQASDTVSPSIPTGLTVATATDDDATHVLPETAPSAHGEAYFKQNEVNVL VLCAGGGTSGILANALNKLSKERGLKLSAAARAYGQDMDLIKDMNMVILAPQMESMKGNL KKITDKYGVKLVTTTGRQYIELTNNGDKALDFVESNL >gi|225002423|gb|ACIZ01000156.1| GENE 4 3454 - 4878 1058 474 aa, chain + ## HITS:1 COG:SA1991 KEGG:ns NR:ns ## COG: SA1991 COG2723 # Protein_GI_number: 15927769 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Staphylococcus aureus N315 # 1 472 1 469 470 508 53.0 1e-144 MSKQLPQDFVMGGATAAYQVEGATKEDGKGRVLWDDFLDKQGRFKPDPAADFYHRYDEDL ALAEKYGHQVIRVSIAWSRIFPDGAGEVEPRGVAFYHKLFADCAAHHIEPFVTLHHFDTP ERLHEAGDWLSQEMLDDFVAYAKFCFEEFSEVKYWITINEPTSMAVQQYTSGTFPPAESG RFDKTFQAEHNQMVAHARIVNLYKSMQLGGQIGIVHALPTVYPYSDSTVDHHAAELQDAL ENRLYLDGTLAGEYHQETLALVKEILDANHQPMFQSTPQEMKAIDEAAHQLDFVGVNNYF SKWLRAYHGKSETIHNGDGTKGSSVARLQGVGEEKLPDGIETTDWDWSIYPRGMYDILMR IHNDYPLVPVTYVTENGIGLKESLPENATPDTVIEDPKRIDYVKKYLSAMADAIHDGANV KGYFIWSLQDQFSWTNGYSKRYGLFFVDFPTQNRYIKQSAEWFKSVSETHIIPD >gi|225002423|gb|ACIZ01000156.1| GENE 5 4927 - 5262 455 111 aa, chain + ## HITS:1 COG:SP0476 KEGG:ns NR:ns ## COG: SP0476 COG1447 # Protein_GI_number: 15900391 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 108 1 108 114 105 53.0 3e-23 MATKEEISMVGFALVAYAGDARTAAVHALDAAEAGDFDKANELVEKAQQDINEAHNQQTQ LLSQEAGGAEMDVTFIMVHGQDTLMTTMLLIDETRYMIRMFKRIKELENKQ Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:25 2011 Seq name: gi|225002422|gb|ACIZ01000157.1| Lactobacillus rhamnosus LMS2-1 contig00194, whole genome shotgun sequence Length of sequence - 648 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 173 - 559 227 ## COG3839 ABC-type sugar transport systems, ATPase components Predicted protein(s) >gi|225002422|gb|ACIZ01000157.1| GENE 1 173 - 559 227 128 aa, chain - ## HITS:1 COG:SP1580 KEGG:ns NR:ns ## COG: SP1580 COG3839 # Protein_GI_number: 15901422 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 20 117 278 375 376 118 51.0 3e-27 MTNSSVGFSQFYQIQQILDRFLNEKGYNGKEIVFGVRPEDIHSDQAFIDTWPDAIVEAEV SVSELLGATEQLYLKTDNEEYIANVNARDFHSPGDRIRVGFDINKAHFFDKETQMAIVDN PIPIESMN Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:26 2011 Seq name: gi|225002421|gb|ACIZ01000158.1| Lactobacillus rhamnosus LMS2-1 contig00196, whole genome shotgun sequence Length of sequence - 207 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:26 2011 Seq name: gi|225002420|gb|ACIZ01000159.1| Lactobacillus rhamnosus LMS2-1 contig00199, whole genome shotgun sequence Length of sequence - 258 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:26 2011 Seq name: gi|225002419|gb|ACIZ01000160.1| Lactobacillus rhamnosus LMS2-1 contig00200, whole genome shotgun sequence Length of sequence - 233 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:27 2011 Seq name: gi|225002418|gb|ACIZ01000161.1| Lactobacillus rhamnosus LMS2-1 contig00202, whole genome shotgun sequence Length of sequence - 230 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 20:31:27 2011 Seq name: gi|225002417|gb|ACIZ01000162.1| Lactobacillus rhamnosus LMS2-1 contig00203, whole genome shotgun sequence Length of sequence - 1739 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 169 - 1272 895 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Predicted protein(s) >gi|225002417|gb|ACIZ01000162.1| GENE 1 169 - 1272 895 367 aa, chain + ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 6 358 4 356 364 311 46.0 2e-84 MALFELPLQNDTSRKIIHLDMDAFYASIEMRDNPRLRHKALVIARDPRTTGGKGVVTTAN YVARRYGVHSAMPANEALQLVPRKELVFKTPDFPKYKAVSAQIHTLFHQVTDLIEPVAFD EAYLDVSANHAFPSTIALALWLQDQIKQATQLTSSIGISYNKFIAKQASDYNKPVGRTLV LPEQALLFLDRLPIKQFRGVGKKTLPKLTDLGVTNGKTLRALSQDQLLTMFGKMGFILYQ HARGVDNRPVAVHTAKSIGKERTYGTPLTDATAVETQLRKLAAMVVTALNQKGMHGKTVV LKVRDVDFVTQTKRLTQDHYFEGEQAIYTAAWQLWQEVKLTKLAIRLLGITVTGLDPKQY ENIDLPL